BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781076|ref|YP_003065489.1| ribonuclease HII [Candidatus
Liberibacter asiaticus str. psy62]
         (209 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254781076|ref|YP_003065489.1| ribonuclease HII [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040753|gb|ACT57549.1| ribonuclease HII [Candidatus Liberibacter asiaticus str. psy62]
          Length = 209

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/209 (100%), Positives = 209/209 (100%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS
Sbjct: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI
Sbjct: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP
Sbjct: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209
           TAKHQQVIKEKGPSCIHRLTFRPLRNLSV
Sbjct: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209


>gi|315122464|ref|YP_004062953.1| ribonuclease HII [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495866|gb|ADR52465.1| ribonuclease HII [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 209

 Score =  315 bits (807), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 158/200 (79%), Positives = 181/200 (90%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E+P+FE E MVR+K MWPVAGIDEVGRGALAG VVVAAIILDPNNIP GINDSKKI  KK
Sbjct: 8   EKPNFEFEIMVRQKKMWPVAGIDEVGRGALAGSVVVAAIILDPNNIPPGINDSKKIPPKK 67

Query: 68  REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           RE LYEKI +SAI+SI+SA ++YID+HNIHKATLD +Y A+ NL++ PRS LIDGRSIPE
Sbjct: 68  REYLYEKIINSAIVSIASAGNRYIDQHNIHKATLDTMYRAINNLKITPRSVLIDGRSIPE 127

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           +LPCQAFA+IKGDS SLSIAAASI+AKVTRDRLM++AHKKYPDYGFDSHVGYPT KH+Q 
Sbjct: 128 NLPCQAFAIIKGDSSSLSIAAASIVAKVTRDRLMKMAHKKYPDYGFDSHVGYPTVKHRQA 187

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           IKEKGPS IHR++FRPL++L
Sbjct: 188 IKEKGPSRIHRMSFRPLKDL 207


>gi|227821031|ref|YP_002825001.1| ribonuclease HII [Sinorhizobium fredii NGR234]
 gi|254807983|sp|C3MHC0|RNH2_RHISN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|227340030|gb|ACP24248.1| ribonuclease HII [Sinorhizobium fredii NGR234]
          Length = 231

 Score =  223 bits (569), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 103/200 (51%), Positives = 139/200 (69%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           P  P F  E   +    WPVAG DE GRG LAGPVV AA+ILDP+ +P G+NDSK ++ +
Sbjct: 16  PVLPDFSFEITAKRDGFWPVAGADEAGRGPLAGPVVAAAVILDPDAVPGGLNDSKLLTAE 75

Query: 67  KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           +RE L+ +I ++A +SI+S+S  +ID  +I KA+LDA+  A++ L +  R ALIDGR +P
Sbjct: 76  QREALFTEIMATATVSIASSSAAHIDATDILKASLDAMRRAIDGLSIAARFALIDGRDVP 135

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           + LPC A A++KGDS S+SIAAASI+AKVTRDR+M  A   +P YGF  H GY T +H+ 
Sbjct: 136 QGLPCHAKAIVKGDSRSVSIAAASIVAKVTRDRMMARADATFPAYGFALHAGYATVRHRS 195

Query: 187 VIKEKGPSCIHRLTFRPLRN 206
            I   GP  +HR++FRP R 
Sbjct: 196 AIDSHGPCSLHRMSFRPFRE 215


>gi|241203307|ref|YP_002974403.1| ribonuclease HII [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240857197|gb|ACS54864.1| Ribonuclease H [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 229

 Score =  223 bits (568), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 107/206 (51%), Positives = 145/206 (70%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           +  ++ P  P F LE   R+   WPVAG DE GRG LAGPVV AA+ILDP  IP G+NDS
Sbjct: 11  LLFDTAPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPRRIPEGLNDS 70

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K++S ++REEL+ +I ++A +SI+S+S   ID+ +I KA+LDA+  A+ +L +     L 
Sbjct: 71  KQLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAIPASYVLT 130

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG  +P  L C   AV+KGD+ S+SIAAASI+AKVTRDR+M  AH  +PDYGF +HVGY 
Sbjct: 131 DGLDVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMARAHSVFPDYGFAAHVGYG 190

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206
           TA+H+  I+  GP  +HR++FRPLR 
Sbjct: 191 TAQHRAGIERHGPCSLHRMSFRPLRK 216


>gi|86356514|ref|YP_468406.1| ribonuclease HII [Rhizobium etli CFN 42]
 gi|123512870|sp|Q2KBV7|RNH2_RHIEC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|86280616|gb|ABC89679.1| ribonuclease HII protein [Rhizobium etli CFN 42]
          Length = 229

 Score =  223 bits (568), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 106/206 (51%), Positives = 147/206 (71%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           +  +++P  P F+LE   R+   WPVAG DE GRG LAGPVV AA+ILDP  IP G+NDS
Sbjct: 11  LLFDTVPLVPDFKLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDS 70

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K++S ++REEL+ +I ++A +SI+S+S   ID+ +I KA+LDA+  A+ +L +     L 
Sbjct: 71  KQLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAIPASYVLT 130

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG  +P  L C   AV+KGD+ S+SIAAASI+AKVTRDR+M  AH  +PDYGF +H GY 
Sbjct: 131 DGLDVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMARAHNVFPDYGFAAHAGYG 190

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206
           TA+H+  I++ GP  +HR++FRPLR 
Sbjct: 191 TAQHRAGIEKHGPCSLHRMSFRPLRK 216


>gi|209548122|ref|YP_002280039.1| ribonuclease HII [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|238056781|sp|B5ZS20|RNH2_RHILW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|209533878|gb|ACI53813.1| Ribonuclease H [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 229

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 108/204 (52%), Positives = 146/204 (71%)

Query: 4   NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
            ++P  P F LE   R+   WPVAG DE GRG LAGPVV AA+ILDP  IP G+NDSK++
Sbjct: 14  QAVPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDSKQL 73

Query: 64  SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
           S ++REEL+ +I ++A +SI+S+S   ID+ +I KA+LDA+  A+ +L +     L DG 
Sbjct: 74  SAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAIPASYVLTDGL 133

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +P  L C   AVIKGD+ S+SIAAASI+AKVTRDR+M  AH  +PDYGF +HVGY TA+
Sbjct: 134 DVPPGLDCPGQAVIKGDARSVSIAAASIVAKVTRDRMMARAHHVFPDYGFAAHVGYGTAQ 193

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H+  I++ GP  +HR++FRPLR +
Sbjct: 194 HRAGIEKLGPCSLHRMSFRPLRKV 217


>gi|116250704|ref|YP_766542.1| ribonuclease HII [Rhizobium leguminosarum bv. viciae 3841]
 gi|166226643|sp|Q1MKS7|RNH2_RHIL3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|115255352|emb|CAK06427.1| putative ribonuclease HII [Rhizobium leguminosarum bv. viciae 3841]
          Length = 229

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 107/206 (51%), Positives = 145/206 (70%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           +  ++ P  P F LE   R+   WPVAG DE GRG LAGPVV AA+ILDP  IP G+NDS
Sbjct: 11  LLFDTAPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDS 70

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K++S ++REEL+ +I ++A +SI+S+S   ID+ +I KA+LDA+  A+ +L +     L 
Sbjct: 71  KQLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAIPASYVLT 130

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG  +P  L C   AV+KGD+ S+SIAAASI+AKVTRDR+M  AH  +PDYGF +HVGY 
Sbjct: 131 DGLDVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMARAHSVFPDYGFAAHVGYG 190

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206
           TA+H+  I+  GP  +HR++FRPLR 
Sbjct: 191 TAQHRAGIERHGPCSLHRMSFRPLRK 216


>gi|190890579|ref|YP_001977121.1| ribonuclease HII protein [Rhizobium etli CIAT 652]
 gi|238692497|sp|B3PRG0|RNH2_RHIE6 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|190695858|gb|ACE89943.1| ribonuclease HII protein [Rhizobium etli CIAT 652]
          Length = 229

 Score =  222 bits (566), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 107/206 (51%), Positives = 145/206 (70%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           +  ++ P  P F LE   R+   WPVAG DE GRG LAGPVV AA+ILDP  IP G+NDS
Sbjct: 11  LLFDTAPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDS 70

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K++S ++REEL+ +I ++A +SI+S+S   ID+ +I KA+LDA+  A+ +L V     L 
Sbjct: 71  KQLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAVPASYVLT 130

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG  +P  L C   AV+KGD+ S+SIAAASI+AKVTRDR+M  AH  +PDYGF +H GY 
Sbjct: 131 DGLDVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMARAHNVFPDYGFAAHAGYG 190

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206
           TA+H+  I++ GP  +HR++FRPLR 
Sbjct: 191 TAQHRTGIEKHGPCSLHRMSFRPLRK 216


>gi|327190563|gb|EGE57656.1| ribonuclease HII protein [Rhizobium etli CNPAF512]
          Length = 229

 Score =  222 bits (565), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 107/206 (51%), Positives = 145/206 (70%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           +  ++ P  P F LE   R+   WPVAG DE GRG LAGPVV AA+ILDP  IP G+NDS
Sbjct: 11  LLFDTAPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDS 70

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K++S ++REEL+ +I ++A +SI+S+S   ID+ +I KA+LDA+  A+ +L V     L 
Sbjct: 71  KQLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAVPASYVLT 130

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG  +P  L C   AV+KGD+ S+SIAAASI+AKVTRDR+M  AH  +PDYGF +H GY 
Sbjct: 131 DGLDVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMARAHNVFPDYGFAAHAGYG 190

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206
           TA+H+  I++ GP  +HR++FRPLR 
Sbjct: 191 TAQHRAGIEKHGPCSLHRMSFRPLRK 216


>gi|222147705|ref|YP_002548662.1| ribonuclease HII [Agrobacterium vitis S4]
 gi|221734693|gb|ACM35656.1| ribonuclease HII [Agrobacterium vitis S4]
          Length = 279

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/196 (53%), Positives = 135/196 (68%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F LE   + K  WPVAG DE GRG LAGPVV AA+ILDP+ IP G+NDSKK++  KRE
Sbjct: 79  PDFSLEESFKAKGCWPVAGTDEAGRGPLAGPVVAAAVILDPDAIPDGLNDSKKLTAAKRE 138

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L+ +I ++A +SI+S+   +ID+ +I KA+LDA+  A   L + P   L DGR +P  L
Sbjct: 139 ALFIQILATATVSIASSGSDHIDRRDIRKASLDAMRRAAAGLSLAPAHLLCDGRDVPPGL 198

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C   AVIKGD+ SLSIAAASI+AKV RDR+M  A   +P YGFD+H GY T  HQ+ I 
Sbjct: 199 ICGGTAVIKGDARSLSIAAASIVAKVMRDRMMTRAALVFPQYGFDAHAGYGTKVHQKAIA 258

Query: 190 EKGPSCIHRLTFRPLR 205
           + GP  +HR++F PLR
Sbjct: 259 DHGPCPLHRMSFSPLR 274


>gi|159184435|ref|NP_353745.2| ribonuclease HII [Agrobacterium tumefaciens str. C58]
 gi|39932435|sp|Q8UHG2|RNH2_AGRT5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|159139748|gb|AAK86530.2| ribonuclease HII [Agrobacterium tumefaciens str. C58]
          Length = 217

 Score =  217 bits (553), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 105/197 (53%), Positives = 138/197 (70%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E   ++K  WPVAG DE GRG LAGPVV AA+ILDP+NIP G++DSKK++ +KRE
Sbjct: 20  PDFAFELEAKKKGFWPVAGTDEAGRGPLAGPVVAAAVILDPDNIPKGMDDSKKLTRQKRE 79

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L+ +I  ++I+S++S+    ID  NI +A+LDA+  AV  L++ P   L DGR  P  +
Sbjct: 80  SLFVQIMETSIVSVASSGPGLIDSVNILRASLDAMRRAVLGLEIPPALVLADGRDRPPGI 139

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           PC+A AVIKGDS SLSIAAASIIAKVTRDR+M  A   +  YGF+ H GY T  H + I+
Sbjct: 140 PCEAKAVIKGDSRSLSIAAASIIAKVTRDRMMERAGVVHTSYGFEGHAGYGTPAHLRAIE 199

Query: 190 EKGPSCIHRLTFRPLRN 206
             GP  +HR++FRPL+ 
Sbjct: 200 SHGPCALHRMSFRPLKR 216


>gi|325292105|ref|YP_004277969.1| Ribonuclease HII [Agrobacterium sp. H13-3]
 gi|325059958|gb|ADY63649.1| Ribonuclease HII [Agrobacterium sp. H13-3]
          Length = 224

 Score =  214 bits (546), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 104/197 (52%), Positives = 137/197 (69%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E   R+K +WPVAG DE GRG LAGPVV AA+ILDP+NIP G++DSKK++  KRE
Sbjct: 27  PDFSFELEARKKGLWPVAGTDEAGRGPLAGPVVAAAVILDPDNIPGGLDDSKKLTKLKRE 86

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L+ +I  ++I+S++S+    ID  NI +A+LDA+  AV  L++ P   L DGR  P  +
Sbjct: 87  SLFLQIMETSIVSVASSGPGLIDTMNILRASLDAMRRAVLGLEISPALVLADGRDKPPGI 146

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C++ AVIKGDS SLSIAAASIIAKVTRDR+M  A   +  YGF+ H GY T  H + I+
Sbjct: 147 TCESKAVIKGDSRSLSIAAASIIAKVTRDRMMERAGVVHSSYGFEGHAGYGTPAHLRAIE 206

Query: 190 EKGPSCIHRLTFRPLRN 206
             GP  +HR++FRPL+ 
Sbjct: 207 SHGPCPLHRMSFRPLKQ 223


>gi|222085047|ref|YP_002543576.1| ribonuclease HII protein [Agrobacterium radiobacter K84]
 gi|221722495|gb|ACM25651.1| ribonuclease HII protein [Agrobacterium radiobacter K84]
          Length = 218

 Score =  212 bits (539), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 105/206 (50%), Positives = 139/206 (67%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           M  +  P  P FELE + R    WPVAG DE GRG LAGPVV AA+ILDP  IP G+NDS
Sbjct: 10  MLFDEGPIVPTFELELIARRAGHWPVAGADEAGRGPLAGPVVAAAVILDPERIPQGLNDS 69

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K++S  +RE L+ +I ++A +SI+S+S   ID  +I KA+LDA+  A+ +L +     L 
Sbjct: 70  KQLSAARREALFAEILATATVSIASSSAGRIDVTDIRKASLDAMRRAICSLAMPASYVLT 129

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG  +P  L C   AV+KGD+ S SIAAASI+AKVTRDR+M  A   +P YGF +H GY 
Sbjct: 130 DGLDVPAGLACPGKAVVKGDARSFSIAAASIVAKVTRDRMMARAGIVFPAYGFAAHAGYG 189

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206
           TA+H+  I++ GP  +HR++FRPLR 
Sbjct: 190 TAQHRAGIEKHGPCSLHRMSFRPLRR 215


>gi|163761011|ref|ZP_02168089.1| putative ribonuclease HII [Hoeflea phototrophica DFL-43]
 gi|162281792|gb|EDQ32085.1| putative ribonuclease HII [Hoeflea phototrophica DFL-43]
          Length = 221

 Score =  210 bits (535), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 109/199 (54%), Positives = 138/199 (69%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           P  P    E    +  + PVAG+DE GRG LAGPVV AA+ILDP  IP G+NDSK +S K
Sbjct: 21  PASPDDRFERHFSKDGLLPVAGLDEAGRGPLAGPVVAAAVILDPARIPEGLNDSKALSRK 80

Query: 67  KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           KRE L+++I ++A++SI+SAS + ID  +I KA+L A+  A+  L V    ALIDGR IP
Sbjct: 81  KRETLFDQIIATAMVSIASASPREIDVTDIRKASLTAMRRALIALPVRAGYALIDGRDIP 140

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             L C   A++KGD+ SLSIAAASI+AKV RDR+M  A   YP YGFDSH GY +AKH  
Sbjct: 141 PGLTCPGRALVKGDARSLSIAAASIVAKVMRDRMMMRAAILYPVYGFDSHKGYGSAKHLA 200

Query: 187 VIKEKGPSCIHRLTFRPLR 205
            I+E GP  +HR++FRPLR
Sbjct: 201 AIREHGPCPLHRMSFRPLR 219


>gi|150395676|ref|YP_001326143.1| ribonuclease HII [Sinorhizobium medicae WSM419]
 gi|166226656|sp|A6U6M8|RNH2_SINMW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|150027191|gb|ABR59308.1| Ribonuclease H [Sinorhizobium medicae WSM419]
          Length = 216

 Score =  209 bits (533), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 105/201 (52%), Positives = 139/201 (69%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           P  P F  E   +   +WPVAG DE GRG LAGPVV AA+IL+P+ IP G+NDSK ++ +
Sbjct: 16  PPVPDFAFERAAQRDGLWPVAGADEAGRGPLAGPVVAAAVILNPDAIPTGLNDSKLLTAE 75

Query: 67  KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           +RE L+E+I ++A +SI+S+S   ID  +I KA+LDA+  AV  L+V  R  L+DGR +P
Sbjct: 76  QRETLFEEILATATVSIASSSSARIDTTDILKASLDAMRRAVHGLEVAARIVLVDGRDVP 135

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             L C A A++KGDS S+SIAAASI+AKVTRDR+M  A   +P YGF  H GY T KH+ 
Sbjct: 136 PGLSCHAKAIVKGDSRSVSIAAASIVAKVTRDRMMARADATFPLYGFAHHAGYATVKHRT 195

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I+  GP  +HR++FRP R L
Sbjct: 196 AIESHGPCSLHRMSFRPFRQL 216


>gi|304393450|ref|ZP_07375378.1| ribonuclease HII [Ahrensia sp. R2A130]
 gi|303294457|gb|EFL88829.1| ribonuclease HII [Ahrensia sp. R2A130]
          Length = 208

 Score =  208 bits (530), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 98/198 (49%), Positives = 136/198 (68%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +P F LE +   K +  V G+DE GRG LAGPV+ AA+ILDP+NIP G+NDSK ++ K+R
Sbjct: 5   QPDFTLETLALSKGIKNVCGVDEAGRGPLAGPVIAAAVILDPDNIPSGLNDSKALTEKRR 64

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            EL++ I +++ ++ ++ +   ID  NI  A+L A+  +V  L V    ALIDG ++P +
Sbjct: 65  SELFDAILATSQVAFATVAAGRIDAMNIRAASLYAMEQSVRALPVCANHALIDGNALPPN 124

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           +PC A A++KGD+ SLSIAAASIIAKV RDR+M  A   +P YGF  H GYPTA H+  +
Sbjct: 125 MPCSAEAIVKGDARSLSIAAASIIAKVMRDRIMVRADTLWPQYGFSGHKGYPTAAHRDAL 184

Query: 189 KEKGPSCIHRLTFRPLRN 206
              GP  IHR++FRP+RN
Sbjct: 185 ARLGPCQIHRMSFRPVRN 202


>gi|218509940|ref|ZP_03507818.1| ribonuclease HII [Rhizobium etli Brasil 5]
          Length = 221

 Score =  207 bits (527), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 100/182 (54%), Positives = 134/182 (73%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           PVAG DE GRG LAGPVV AA+ILDP  IP G+NDSK++S ++REEL+ +I ++A +SI+
Sbjct: 27  PVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDSKQLSAQRREELFVQILATATVSIA 86

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           S+S   ID+ +I KA+LDA+  A+ +L V     L DG  +P  L C   AV+KGD+ S+
Sbjct: 87  SSSSTRIDETDIRKASLDAMRRAICSLAVPASYVLTDGLDVPPGLACPGQAVVKGDARSV 146

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASI+AKVTRDR+M  AH  +PDYGF +H GY TA+H+  I++ GP  +HR++FRPL
Sbjct: 147 SIAAASIVAKVTRDRMMARAHNVFPDYGFAAHAGYGTAQHRAGIEKHGPCSLHRMSFRPL 206

Query: 205 RN 206
           R 
Sbjct: 207 RK 208


>gi|319403915|emb|CBI77503.1| Ribonuclease HII [Bartonella rochalimae ATCC BAA-1498]
          Length = 223

 Score =  205 bits (522), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 142/202 (70%), Gaps = 2/202 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           +P +P+F  E  +++K  + +AG+DEVGRG LAGPVV AA+ILD + IP G+NDSKK+S 
Sbjct: 15  VPFQPNFSYELDLQKKGFFYIAGVDEVGRGPLAGPVVTAAVILDKDRIPEGLNDSKKLSS 74

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           ++R  LY +I  +A+ IS++S   + IDK NI KATL+A+ H +  L +    ALIDGR 
Sbjct: 75  QQRNRLYYEILRNALAISVASLCARTIDKSNIRKATLEAMRHCITGLAISAHYALIDGRD 134

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           IP DLPC A A+IKGD  S+SIAAASIIAKV RDR+M+ A + Y +YG + HVGY T  H
Sbjct: 135 IPFDLPCPAVALIKGDQSSVSIAAASIIAKVIRDRMMQYAGRIYQNYGLEKHVGYGTVAH 194

Query: 185 QQVIKEKGPSC-IHRLTFRPLR 205
           +  I + GP   +HR +F PL+
Sbjct: 195 RAAIDKYGPIVRLHRYSFSPLK 216


>gi|15964592|ref|NP_384945.1| ribonuclease HII [Sinorhizobium meliloti 1021]
 gi|307309338|ref|ZP_07589001.1| Ribonuclease H [Sinorhizobium meliloti BL225C]
 gi|307320074|ref|ZP_07599495.1| Ribonuclease H [Sinorhizobium meliloti AK83]
 gi|39932445|sp|Q92RM4|RNH2_RHIME RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|15073770|emb|CAC45411.1| Probable ribonuclease HII protein [Sinorhizobium meliloti 1021]
 gi|306894289|gb|EFN25054.1| Ribonuclease H [Sinorhizobium meliloti AK83]
 gi|306900207|gb|EFN30825.1| Ribonuclease H [Sinorhizobium meliloti BL225C]
          Length = 216

 Score =  203 bits (517), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 102/198 (51%), Positives = 136/198 (68%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E        WPVAG DE GRG LAGPVV AA+ILDP+ IP G+NDSK ++ ++RE
Sbjct: 19  PDFTFERAAHRDGFWPVAGADEAGRGPLAGPVVAAAVILDPDAIPAGLNDSKLLTAEQRE 78

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L+E+I +++ +SI+S+S   ID  +I KA+LDA+  AV  L++  R  L+DGR +P  L
Sbjct: 79  ALFEEILATSTVSIASSSSARIDTTDILKASLDAMRRAVHGLELAARIVLVDGRDVPPGL 138

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C A A++KGDS S+SIAAASI+AKVTRDR+M  A   +P YGF  H GY T KH+  I+
Sbjct: 139 SCHAKAIVKGDSRSVSIAAASIVAKVTRDRMMARADATFPLYGFAHHAGYATVKHRTAIE 198

Query: 190 EKGPSCIHRLTFRPLRNL 207
             GP  +HR++FRP R +
Sbjct: 199 SHGPCSLHRMSFRPFRQV 216


>gi|319406927|emb|CBI80564.1| Ribonuclease HII [Bartonella sp. 1-1C]
          Length = 212

 Score =  202 bits (513), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 104/207 (50%), Positives = 144/207 (69%), Gaps = 4/207 (1%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           MF  S+  +P+F  E  +++K  + +AG+DEVGRG LAGPVV AA++LD + IP G+NDS
Sbjct: 1   MFNVSL--QPNFSYELDLQKKGFFYIAGVDEVGRGPLAGPVVTAAVVLDKDRIPEGLNDS 58

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           KK+S ++R  LY +I  +A+ +S++S   + IDK NI KATL+A+ H +  L +    AL
Sbjct: 59  KKLSSQQRNRLYYEILRNALAVSVASLCARTIDKSNIRKATLEAMRHCITGLAISAHYAL 118

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           IDGR IP +LPC A A+IKGD  S+SIAAASIIAKV RDR+M+ A + Y +YG + HVGY
Sbjct: 119 IDGRDIPSNLPCPAVALIKGDQSSVSIAAASIIAKVIRDRMMQYAGRVYQNYGLEKHVGY 178

Query: 180 PTAKHQQVIKEKGPSC-IHRLTFRPLR 205
            T  H+  I + GP   +HR +F PL+
Sbjct: 179 GTVAHRAAIDKYGPIVRLHRYSFSPLK 205


>gi|319898589|ref|YP_004158682.1| Ribonuclease HII [Bartonella clarridgeiae 73]
 gi|319402553|emb|CBI76098.1| Ribonuclease HII [Bartonella clarridgeiae 73]
          Length = 212

 Score =  201 bits (512), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 103/207 (49%), Positives = 146/207 (70%), Gaps = 4/207 (1%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           MF  ++P +P+F  E  +++K  + +AG+DEVGRG LAGPVV AA++LD + IP G+NDS
Sbjct: 1   MF--NVPFQPNFSYELDLQKKGFFYIAGVDEVGRGPLAGPVVTAAVVLDKDCIPEGVNDS 58

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           KK+S ++R +LY +I  +A+ IS++S   + IDK +I KATL+A+   +  L +    AL
Sbjct: 59  KKLSSQQRNKLYYEILQNALAISVASICARTIDKSDIRKATLEAMRRCISGLAISAHYAL 118

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           IDGR +P +LPC A A+IKGD  S+SIAAASIIAKV RDR+M+ A + Y +YG + HVGY
Sbjct: 119 IDGRDVPPNLPCPAIALIKGDQSSVSIAAASIIAKVMRDRMMQYAGQVYQNYGLEKHVGY 178

Query: 180 PTAKHQQVIKEKGPSC-IHRLTFRPLR 205
            TA H+  I + GP   +HR +F PL+
Sbjct: 179 ATAAHRAAIDKYGPIVRLHRYSFSPLK 205


>gi|49473986|ref|YP_032028.1| ribonuclease HII [Bartonella quintana str. Toulouse]
 gi|81647195|sp|Q6G0E6|RNH2_BARQU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|49239489|emb|CAF25842.1| Ribonuclease HII [Bartonella quintana str. Toulouse]
          Length = 223

 Score =  199 bits (505), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 102/204 (50%), Positives = 144/204 (70%), Gaps = 2/204 (0%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           ++P +P+F  E  ++++  + +AG+DEVGRG LAGPVV AA+ILD +++P G+NDSKK+S
Sbjct: 13  NLPLKPNFSCELDLQKQGFFHIAGVDEVGRGPLAGPVVTAAVILDKDHVPDGLNDSKKLS 72

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            ++R ELY +I  SA+ +SI+S   + ID+ +I KATL+A+   V  L +    ALIDGR
Sbjct: 73  AQRRNELYCEILQSALAVSIASLCARTIDQSDIRKATLEAMRRCVTGLAIPAHYALIDGR 132

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            IP  LPC A A+IKGD  S+SIAAASIIAKVTRDR+M+ A + Y +YG + HVGY T  
Sbjct: 133 DIPFQLPCPATALIKGDQHSVSIAAASIIAKVTRDRMMKCAGQIYKNYGLEKHVGYATLA 192

Query: 184 HQQVIKEKGPSC-IHRLTFRPLRN 206
           H+  + + GP   +HR +F PL+ 
Sbjct: 193 HRIALDKYGPVVGLHRYSFAPLKG 216


>gi|319405354|emb|CBI78971.1| Ribonuclease HII [Bartonella sp. AR 15-3]
          Length = 212

 Score =  199 bits (505), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 104/207 (50%), Positives = 143/207 (69%), Gaps = 4/207 (1%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           MF  ++P +P+F  E  +++K  + VAG+DEVGRG LAGPVV AA++LD + IP G+NDS
Sbjct: 1   MF--NVPFQPNFSYELDLQKKGFFYVAGVDEVGRGPLAGPVVTAAVVLDKSRIPEGLNDS 58

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           KK+S ++R  LY +I  +A+ IS++S   + IDK +I KATL+A+   V  L +    AL
Sbjct: 59  KKLSRQQRNRLYYEILQNALAISVASLCARTIDKSDIRKATLEAMRRCVTGLAISAHYAL 118

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           IDGR IP +LPC A A+IKGD  S+SIAAASIIAKV RDR+M+ A + Y +Y  + HVGY
Sbjct: 119 IDGRDIPSNLPCPAIALIKGDQSSVSIAAASIIAKVIRDRMMQYAGRVYQNYDLEKHVGY 178

Query: 180 PTAKHQQVIKEKGPSC-IHRLTFRPLR 205
            T  H+  I + GP   +HR +F PL+
Sbjct: 179 GTVAHRAAIDKYGPIVRLHRYSFSPLK 205


>gi|182677913|ref|YP_001832059.1| ribonuclease H [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633796|gb|ACB94570.1| Ribonuclease H [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 210

 Score =  199 bits (505), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 100/201 (49%), Positives = 132/201 (65%), Gaps = 1/201 (0%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           S P +P F  E  +R++    +AGIDEVGRG LAGPV  AA+ILDP N+P G+NDSK +S
Sbjct: 7   SNPSQPDFTFEKRLRKRGFTLIAGIDEVGRGPLAGPVTAAAVILDPKNLPQGLNDSKMLS 66

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            ++RE LY+ I + A+ ++I+      ID+ NI +ATL A+   +  L + P   L+DG 
Sbjct: 67  AEQREALYDLILARALAVAIACVGPGEIDRINIRQATLTAMRRTLPALALAPHYVLVDGN 126

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +PEDL C    +IKGD+ SLSIAAASI+AKV RDRLM+     YP YGF++HVGY T  
Sbjct: 127 DLPEDLGCPGETIIKGDARSLSIAAASIVAKVARDRLMQRLSALYPAYGFENHVGYATQA 186

Query: 184 HQQVIKEKGPSCIHRLTFRPL 204
           H   I+  GP  IHRL+F P 
Sbjct: 187 HLTAIEAYGPCPIHRLSFSPF 207


>gi|49475220|ref|YP_033261.1| ribonuclease HII [Bartonella henselae str. Houston-1]
 gi|81648141|sp|Q6G4E3|RNH2_BARHE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|49238025|emb|CAF27232.1| Ribonuclease HII [Bartonella henselae str. Houston-1]
          Length = 223

 Score =  199 bits (505), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 103/204 (50%), Positives = 141/204 (69%), Gaps = 2/204 (0%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           ++P +P+F  E  ++++    +AG+DEVGRG LAGPVV AA+ILD N IP G+NDSKK+S
Sbjct: 13  NLPFKPNFACELDLQKQGFLYIAGVDEVGRGPLAGPVVTAAVILDKNRIPDGLNDSKKLS 72

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            ++R ELY +I  SA+ ISI+S   + ID+ +I KATL+A+   +  L V    AL+DGR
Sbjct: 73  AQRRYELYHEILQSALAISIASLCARTIDQSDIRKATLEAMRRCIRGLAVPAHYALVDGR 132

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            IP  LPC A A+IKGD  S+SIAAASIIAKVTRD++M  A + Y  YG + HVGY T  
Sbjct: 133 DIPFQLPCPATALIKGDQRSVSIAAASIIAKVTRDQMMECAGQVYKGYGLEKHVGYATLA 192

Query: 184 HQQVIKEKGPSC-IHRLTFRPLRN 206
           H+  +++ GP   +HR +F PL+ 
Sbjct: 193 HRAALEKYGPVVGLHRYSFAPLKK 216


>gi|217977760|ref|YP_002361907.1| Ribonuclease H [Methylocella silvestris BL2]
 gi|217503136|gb|ACK50545.1| Ribonuclease H [Methylocella silvestris BL2]
          Length = 208

 Score =  197 bits (501), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 102/201 (50%), Positives = 135/201 (67%), Gaps = 1/201 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           I +RP F LE  +  +++WPVAG+DE GRG LAGPV  AA+ILDP+N+P G+NDSK+++ 
Sbjct: 6   ILDRPDFRLERKLLRRDVWPVAGVDEAGRGPLAGPVAAAAVILDPDNLPRGLNDSKQLTR 65

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           ++RE+LYE I   A+ +++  +S + ID  NI +AT  A+  A+  L   PR  LIDG  
Sbjct: 66  EEREKLYESIMKRALAVAVGFSSVKEIDAVNIRQATFRAMRRALAALAASPRYVLIDGND 125

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +  DL C+   ++KGD+  LSIAAASI+AKVTRDRLM      +P YGF  HVGY T  H
Sbjct: 126 LAPDLCCEGETIVKGDASILSIAAASIVAKVTRDRLMSRLCAVHPVYGFSQHVGYGTPAH 185

Query: 185 QQVIKEKGPSCIHRLTFRPLR 205
            Q I+  GP   HRLTFRP R
Sbjct: 186 LQAIEAHGPCPFHRLTFRPFR 206


>gi|126724759|ref|ZP_01740602.1| ribonuclease HII [Rhodobacterales bacterium HTCC2150]
 gi|126705923|gb|EBA05013.1| ribonuclease HII [Rhodobacterales bacterium HTCC2150]
          Length = 209

 Score =  196 bits (499), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 99/198 (50%), Positives = 137/198 (69%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P +  E    +K +  VAG+DEVGRG LAGPV  AA+ILDP+NIP G+NDSKK+S KKR+
Sbjct: 6   PDYSFERAAIDKGIKIVAGVDEVGRGPLAGPVTAAAVILDPDNIPEGLNDSKKLSAKKRD 65

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L+++I + A++SI+ AS   ID+ NI +A+  A+  A++ L  +P+ ALIDGR IP++ 
Sbjct: 66  LLFDQIMNVAMVSIAHASVAEIDEINIRQASHLAMVRAIQGLDQLPQLALIDGRDIPKET 125

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           PC   A+IKGD  S+SIAAASI+AKVTRDRLM    + +P YG+D + GYPT  H   + 
Sbjct: 126 PCSGQAIIKGDGKSMSIAAASIVAKVTRDRLMVDLAQHHPGYGWDKNAGYPTKSHIAALN 185

Query: 190 EKGPSCIHRLTFRPLRNL 207
           E G +  HR +F P+  +
Sbjct: 186 ELGVTQHHRCSFGPVHKM 203


>gi|163867862|ref|YP_001609066.1| ribonuclease HII [Bartonella tribocorum CIP 105476]
 gi|189043567|sp|A9IQL1|RNH2_BART1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|161017513|emb|CAK01071.1| Ribonuclease HII [Bartonella tribocorum CIP 105476]
          Length = 224

 Score =  196 bits (497), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 102/203 (50%), Positives = 139/203 (68%), Gaps = 2/203 (0%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           S+  +P+F  E  ++++  + VAG+DEVGRG LAGPVV AA+ILD + IP G+NDSKK+S
Sbjct: 14  SLSFQPNFLCELGLQKQGFFHVAGVDEVGRGPLAGPVVTAAVILDKDRIPDGLNDSKKLS 73

Query: 65  HKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
             +R  LY +I  SA+  SI+S   + ID+ NI KATL+A+   +  L V     L+DGR
Sbjct: 74  FLQRNRLYHEILQSALAASIASLCARTIDQSNIRKATLEAMRRCIIGLAVPAHYVLVDGR 133

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            IP +LPC A A+IKGD  S+SIAAASIIAKVTRDR+M  A + Y +YG + HVGY T  
Sbjct: 134 DIPSELPCPAMALIKGDQRSVSIAAASIIAKVTRDRMMECAGQVYTNYGLEKHVGYATLA 193

Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205
           H++ + + GP   +HR +F PL+
Sbjct: 194 HRRALDKYGPIVGLHRYSFAPLK 216


>gi|218660707|ref|ZP_03516637.1| ribonuclease HII [Rhizobium etli IE4771]
          Length = 215

 Score =  194 bits (492), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 94/173 (54%), Positives = 128/173 (73%)

Query: 34  RGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDK 93
           RG LAGPVV AA+ILDP  IP G+NDSK++S ++REEL+ +I ++A +SI+S+S   ID+
Sbjct: 30  RGPLAGPVVAAAVILDPKRIPEGLNDSKQLSAQRREELFVQILATATVSIASSSSTRIDE 89

Query: 94  HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIA 153
            +I KA+LDA+  A+ +L V     L DG  +P  L C   AV+KGD+ S+SIAAASI+A
Sbjct: 90  TDIRKASLDAMRRAICSLAVPASYVLTDGLDVPPGLDCPGQAVVKGDARSVSIAAASIVA 149

Query: 154 KVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           KVTRDR+M  AH  +PDYGF +HVGY TA+H+  I++ GP  +HR++FRPLR 
Sbjct: 150 KVTRDRMMARAHNVFPDYGFAAHVGYGTAQHRAGIEKHGPCSLHRMSFRPLRK 202


>gi|299134668|ref|ZP_07027860.1| Ribonuclease H [Afipia sp. 1NLS2]
 gi|298590478|gb|EFI50681.1| Ribonuclease H [Afipia sp. 1NLS2]
          Length = 254

 Score =  192 bits (487), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 96/196 (48%), Positives = 134/196 (68%), Gaps = 1/196 (0%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           RP F  E  + ++ +WPVAG DEVGRG LAGPVV AA+ILDP+ IP GI+DSK+++ + R
Sbjct: 24  RPSFRRERALLKQGIWPVAGCDEVGRGPLAGPVVAAAVILDPDRIPKGIDDSKRLTVEAR 83

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           E L+E+I ++A++S+++A    ID+ NI +A+L A+  AV+ L   PR   +DGR    D
Sbjct: 84  EALFEEICATAMVSVAAAPPWRIDRDNILRASLWALARAVQGLPQAPRHVFVDGRDR-ID 142

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           +PC    VI GD + LSI AASI+AKVTRDRLM    + +P+YGFDSH+GY   +H   +
Sbjct: 143 VPCGCEPVIGGDGLLLSIGAASIVAKVTRDRLMCRLARVHPEYGFDSHMGYGVPRHLAAL 202

Query: 189 KEKGPSCIHRLTFRPL 204
           +  GP+  HR  F P+
Sbjct: 203 ELHGPTPHHRRYFAPV 218


>gi|209886088|ref|YP_002289945.1| ribonuclease HII (RNase HII) [Oligotropha carboxidovorans OM5]
 gi|209874284|gb|ACI94080.1| ribonuclease HII (RNase HII) [Oligotropha carboxidovorans OM5]
          Length = 259

 Score =  191 bits (486), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 95/196 (48%), Positives = 132/196 (67%), Gaps = 1/196 (0%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           RP F  E  + ++ +WPVAG DEVGRG LAGPVV AA+ILDP+ IP GINDSK+++ + R
Sbjct: 28  RPSFRRERALMKQGIWPVAGCDEVGRGPLAGPVVAAAVILDPDRIPKGINDSKRLTAEAR 87

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           E L+E+I ++A +S+++A    ID+ NI +A+L A+  AV+ L   PR   +DGR     
Sbjct: 88  EALFEEICATAFVSVAAAPPWRIDRDNILRASLWALTRAVKGLPQPPRHVFVDGRD-KIA 146

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           + C+  AVI GD +  SI AASI+AKVTRDRLM    ++YP YGF+SH+GY   +H   +
Sbjct: 147 VSCECEAVIGGDGLLFSIGAASIVAKVTRDRLMCALARQYPQYGFESHMGYAVPQHLAAL 206

Query: 189 KEKGPSCIHRLTFRPL 204
           +  GP+  HR  F P+
Sbjct: 207 ERHGPTPHHRRHFAPV 222


>gi|13476167|ref|NP_107737.1| ribonuclease HII [Mesorhizobium loti MAFF303099]
 gi|39932447|sp|Q986D0|RNH2_RHILO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|14026927|dbj|BAB53523.1| ribonuclease HII [Mesorhizobium loti MAFF303099]
          Length = 231

 Score =  191 bits (484), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 102/202 (50%), Positives = 136/202 (67%), Gaps = 2/202 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           I E+P F  E       +WPVAG+DE GRG LAGPVV AA++LDP NIP G++DSK++SH
Sbjct: 14  IVEKPDFSFETKAMADGLWPVAGMDEAGRGPLAGPVVAAAVVLDPANIPEGLDDSKRLSH 73

Query: 66  KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
            +RE L+ +I  SA  +S++S S + ID  NI KA+L+A+  A+  L V P+ AL DGR 
Sbjct: 74  FQREALFLRILGSAQAVSMASISAEGIDGSNILKASLEAMRRALVGLSVRPKLALADGRD 133

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +P  LPC   A+IKGD  S SIAAASI+AKV RDR+M      +  YGF+ H+GY TA+H
Sbjct: 134 VPPGLPCDGRALIKGDQRSQSIAAASIVAKVMRDRMMCGCGSHHDRYGFEVHMGYATARH 193

Query: 185 QQVIKEKGPSC-IHRLTFRPLR 205
           +  I+  GP   +HR++F P R
Sbjct: 194 RTAIETHGPVARLHRVSFAPFR 215


>gi|319408204|emb|CBI81857.1| Ribonuclease HII [Bartonella schoenbuchensis R1]
          Length = 223

 Score =  191 bits (484), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 100/203 (49%), Positives = 137/203 (67%), Gaps = 2/203 (0%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           ++P +P F  E  + ++  + +AG+DEVGRG LAGPVV AA+ILD N+IP G+NDSKK S
Sbjct: 13  NVPLQPDFSHELDLHKQGFFYIAGVDEVGRGPLAGPVVTAAVILDKNHIPEGLNDSKKFS 72

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            ++R +LY KI  +A+ IS++S   + ID+ +I KATL+A+   V  L +     L+DGR
Sbjct: 73  AQQRNQLYGKILQNALAISVASICARVIDQSDIRKATLEAMRRCVVGLSIPAHYVLVDGR 132

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            IP  L C A A+IKGD  S+SIAAASI+AKVTRDR+M  A + Y  YG + HVGY T  
Sbjct: 133 DIPPHLLCPATALIKGDQRSVSIAAASIVAKVTRDRMMECAGRVYESYGLEKHVGYATVA 192

Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205
           H+  I + GP   +HR +F PL+
Sbjct: 193 HRTAIAKYGPILGLHRYSFAPLK 215


>gi|319784761|ref|YP_004144237.1| ribonuclease H [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317170649|gb|ADV14187.1| Ribonuclease H [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 233

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 100/202 (49%), Positives = 137/202 (67%), Gaps = 2/202 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           I E+P F  E     + +WPVAG+DE GRG LAGPVV AA++LDP NIP G++DSK++SH
Sbjct: 14  IIEKPDFSFETKAMAEGLWPVAGMDEAGRGPLAGPVVAAAVVLDPANIPDGLDDSKRLSH 73

Query: 66  KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
            +RE L+ +I  SA  +S++S S + ID  NI KA+L+A+  A+  L + P+ AL DGR 
Sbjct: 74  LQREALFLRILGSAQAVSMASISAEGIDGSNILKASLEAMRRALVGLSIRPKLALADGRD 133

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +P  LPC+  A+IKGD  S SIAAASI+AKV RDR+M      +  YGF+ H+GY T +H
Sbjct: 134 VPPGLPCEGRALIKGDQRSQSIAAASIVAKVMRDRMMCGCGNHHDRYGFEVHMGYATVRH 193

Query: 185 QQVIKEKGPSC-IHRLTFRPLR 205
           +  I+  GP   +HR++F P R
Sbjct: 194 RTAIEAHGPVARLHRVSFAPFR 215


>gi|126734213|ref|ZP_01749960.1| ribonuclease HII [Roseobacter sp. CCS2]
 gi|126717079|gb|EBA13943.1| ribonuclease HII [Roseobacter sp. CCS2]
          Length = 207

 Score =  189 bits (479), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 96/199 (48%), Positives = 138/199 (69%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +P F  E+   ++    VAG+DEVGRG LAGPVV AA+IL+P NIP G+NDSKK++ K+R
Sbjct: 3   KPDFSFESAAHQRGFIHVAGVDEVGRGPLAGPVVAAAVILNPANIPDGLNDSKKLTAKRR 62

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           + LY+++ + A +SI+ A+   ID+HNI +A+  A+  AV  L VI   ALIDG  IP D
Sbjct: 63  DALYDELLAVADVSIAEATVAEIDEHNILRASHIAMVRAVAGLSVIAAHALIDGNMIPRD 122

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L   +  +IKGD  SLSIAAASI+AKV RDR M    +++P YG++ + GYPTA+H+  +
Sbjct: 123 LAISSQTIIKGDGRSLSIAAASIMAKVWRDRHMVALAQQHPHYGWEKNAGYPTAQHKLGL 182

Query: 189 KEKGPSCIHRLTFRPLRNL 207
           ++ G +  HR +F+P+ N+
Sbjct: 183 QQFGVTEHHRRSFKPIHNI 201


>gi|240850070|ref|YP_002971463.1| ribonuclease HII [Bartonella grahamii as4aup]
 gi|240267193|gb|ACS50781.1| ribonuclease HII [Bartonella grahamii as4aup]
          Length = 224

 Score =  189 bits (479), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 98/207 (47%), Positives = 139/207 (67%), Gaps = 4/207 (1%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           MF  ++P +P+F  E  ++++  + +AG+DEVGRG LAGPVV AA+ILD ++IP  +NDS
Sbjct: 12  MF--NVPLQPNFSCELDLQKQGFFHIAGVDEVGRGPLAGPVVTAAVILDKDHIPNELNDS 69

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           KK+S  +R  LY +I  SA+ +S++S   + ID+ NI KATL+A+   +  L +     L
Sbjct: 70  KKLSFLQRNRLYHEILQSALAVSVASLCARTIDQSNIRKATLEAMRRCIIGLAIPAHYVL 129

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           +DGR IP +L C A A+IKGD  S+SIAAASIIAKVTRDR+M    + Y  YG + HVGY
Sbjct: 130 VDGRDIPSELSCPAMALIKGDQRSVSIAAASIIAKVTRDRMMECVGQVYKGYGLEKHVGY 189

Query: 180 PTAKHQQVIKEKGPSC-IHRLTFRPLR 205
            T  H+  + + GP   +HR +F PL+
Sbjct: 190 ATLAHRTALDKYGPIIGLHRYSFAPLK 216


>gi|118590790|ref|ZP_01548191.1| ribonuclease HII [Stappia aggregata IAM 12614]
 gi|118436766|gb|EAV43406.1| ribonuclease HII [Stappia aggregata IAM 12614]
          Length = 228

 Score =  188 bits (478), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 94/205 (45%), Positives = 133/205 (64%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           +F  + P+ P   +E          + G+DE GRG  AGPVV AA+ILD + +P G+NDS
Sbjct: 19  LFDLAFPDSPDLAVERKHAAAFDGRLCGVDEAGRGPWAGPVVTAAVILDYDRLPDGLNDS 78

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           KK++  +REEL+E+I +SA +S++SAS   ID  NI  ATL A+  AV +L ++P   L+
Sbjct: 79  KKLTEARREELFEQIVASAHVSLASASPATIDAVNIRTATLSAMVRAVNHLPLVPDYVLV 138

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DGR +P  L     A+IKGD   L +AAASI+AKVTRDR+M     ++PDYGF  H GY 
Sbjct: 139 DGRDVPLGLKQAGQALIKGDGRCLCVAAASIVAKVTRDRMMVHLDARFPDYGFAQHKGYG 198

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLR 205
             +HQQ ++  GP+  HR++F+P+R
Sbjct: 199 VPQHQQALERHGPTVHHRMSFKPVR 223


>gi|90420158|ref|ZP_01228066.1| ribonuclease HII [Aurantimonas manganoxydans SI85-9A1]
 gi|90335492|gb|EAS49242.1| ribonuclease HII [Aurantimonas manganoxydans SI85-9A1]
          Length = 228

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 97/197 (49%), Positives = 124/197 (62%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  EA +       VAGIDE GRG LAGPVV AA+I    + P G+NDSKK++ + RE
Sbjct: 25  PDFSREAGLLADGKRFVAGIDEAGRGPLAGPVVTAAVIFPTRDFPDGLNDSKKLTAEDRE 84

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L+ +I +   + I+SAS   ID+ NI  ATL A+  A+  L   P   L+DGR +P  L
Sbjct: 85  RLFAEIVAKGWVGIASASADEIDRFNIRGATLIAMRRALHALPQAPCHVLVDGRDVPPAL 144

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C   AVI GD++SLSIAAASI+AKVTRDR+M  A + Y  YGF  H+GY T +H   I 
Sbjct: 145 RCAGTAVISGDALSLSIAAASIVAKVTRDRIMARACRAYEGYGFSRHMGYGTPEHLGAIA 204

Query: 190 EKGPSCIHRLTFRPLRN 206
             GP+ IHR++F PLR 
Sbjct: 205 RLGPTPIHRMSFSPLRR 221


>gi|159042579|ref|YP_001531373.1| ribonuclease HII [Dinoroseobacter shibae DFL 12]
 gi|189043594|sp|A8LJU6|RNH2_DINSH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157910339|gb|ABV91772.1| ribonuclease HII [Dinoroseobacter shibae DFL 12]
          Length = 206

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 94/199 (47%), Positives = 133/199 (66%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           RPHF+ E  +  +    +AG+DEVGRG LAGPV+ AA++LDP  IP G+NDSK+++ K+R
Sbjct: 3   RPHFQFETDLAARGYLRIAGVDEVGRGPLAGPVMAAAVVLDPGAIPEGLNDSKQVTAKRR 62

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           E L  ++   A + +  A    ID+ NI +A   A+  A++ L   P  ALIDGR  P+D
Sbjct: 63  EALAAQLAQVAQVGVGVAEVAEIDRLNIRRAAHLAMLRALDALPAPPDMALIDGRDRPDD 122

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LPC A A+IKGD+ SLSIAAASI+AKV RDR+M     ++P YG++++ GYPT  H+  +
Sbjct: 123 LPCAAHAIIKGDTKSLSIAAASIVAKVARDRVMTALAAEFPGYGWETNAGYPTQAHRAAL 182

Query: 189 KEKGPSCIHRLTFRPLRNL 207
            + G S  HR +FRP+ N+
Sbjct: 183 LDIGVSPHHRRSFRPVHNI 201


>gi|254472008|ref|ZP_05085409.1| ribonuclease HII [Pseudovibrio sp. JE062]
 gi|211959210|gb|EEA94409.1| ribonuclease HII [Pseudovibrio sp. JE062]
          Length = 217

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 94/207 (45%), Positives = 130/207 (62%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           +F  + P+ P    E  V +      AGIDE GRG  AGPVVVAA  L+ +N+P G+NDS
Sbjct: 8   LFDIAFPDAPDLRFERSVEQDLQGRFAGIDEAGRGPWAGPVVVAAASLNYDNLPEGLNDS 67

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           KK++  KREEL+E+I   A +S+   S Q ID+ NI +ATL  +     +L V  +   I
Sbjct: 68  KKLTEAKREELFEQILEVADVSVCVQSAQTIDRLNIREATLQGMRTCARSLSVPVKRFFI 127

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG+ +P  LP +  A+IKGD   L+I+AASI+AKVTRDRLM    + +P+YGF  H GY 
Sbjct: 128 DGKDVPHHLPQEGQAMIKGDGRCLAISAASIVAKVTRDRLMVKMDRYFPEYGFAKHKGYG 187

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           T +HQ+ +   G + +HR +FRP+R L
Sbjct: 188 TKQHQEALAAHGVTPLHRCSFRPIREL 214


>gi|300024383|ref|YP_003756994.1| ribonuclease H [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526204|gb|ADJ24673.1| Ribonuclease H [Hyphomicrobium denitrificans ATCC 51888]
          Length = 231

 Score =  184 bits (466), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 96/197 (48%), Positives = 123/197 (62%), Gaps = 1/197 (0%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +P FELEA   +    P+AG+DE GRG  AGPVV AA+ILDP+ IP  I+DSK +    R
Sbjct: 9   KPTFELEAAEHQLGSRPIAGVDEAGRGPWAGPVVAAAVILDPDKIPANIDDSKTLDEDSR 68

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
             LY +I   AI+ +  A    ID+ NI  ATL A+  AV  L   P+  L+DG   P  
Sbjct: 69  AFLYRRIMKVAIVGVGIADVDRIDRENILGATLWAMAEAVSQLGETPKLVLVDGDKTPR- 127

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           +P    A++KGDS  LSIAAASI+AKVTRDRLM    + YP YGF+ H GY T +HQ  I
Sbjct: 128 IPMSVRAIVKGDSKCLSIAAASIVAKVTRDRLMMDFARAYPGYGFERHKGYGTPEHQAAI 187

Query: 189 KEKGPSCIHRLTFRPLR 205
            + G S +HR +FRP++
Sbjct: 188 AKLGVSALHRRSFRPVQ 204


>gi|121601736|ref|YP_988707.1| ribonuclease HII [Bartonella bacilliformis KC583]
 gi|166225170|sp|A1URV4|RNH2_BARBK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|120613913|gb|ABM44514.1| ribonuclease HII [Bartonella bacilliformis KC583]
          Length = 222

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/200 (50%), Positives = 134/200 (67%), Gaps = 2/200 (1%)

Query: 4   NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           + +P +P+F  E  ++ +  + +AG+DEVGRG LAGPVV AA+IL  ++   G+NDSKK+
Sbjct: 12  SDLPPQPNFSYELDLQNQGFFHIAGVDEVGRGPLAGPVVTAAVILSKDHSLDGLNDSKKL 71

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           S +KR  LY +I  SA+ ISI+S   + ID+ +I KATL+A+   V  L V    ALIDG
Sbjct: 72  SVQKRNRLYCEILQSALAISIASICARAIDQSDIRKATLEAMRRCVMGLAVPAHYALIDG 131

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
           R IP  LPC A A++KGD  S+SIAAASI+AKVTRDR+M  A + Y  YG + HVGY T 
Sbjct: 132 RDIPPHLPCPAKALVKGDQRSVSIAAASIVAKVTRDRMMEHAGQVYQGYGLEKHVGYATV 191

Query: 183 KHQQVIKEKGPSC-IHRLTF 201
            H+  I E GP   +HR +F
Sbjct: 192 AHRAAIAEYGPVIGLHRYSF 211


>gi|260460365|ref|ZP_05808617.1| Ribonuclease H [Mesorhizobium opportunistum WSM2075]
 gi|259034010|gb|EEW35269.1| Ribonuclease H [Mesorhizobium opportunistum WSM2075]
          Length = 205

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 97/186 (52%), Positives = 130/186 (69%), Gaps = 2/186 (1%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-I 80
            +WPVAG+DE GRG LAGPVV AA++LDP NIP G++DSK++SH +RE L+ +I  SA  
Sbjct: 4   GLWPVAGMDEAGRGPLAGPVVAAAVVLDPANIPEGLDDSKRLSHLQREALFLRILGSAQA 63

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
           +S++S S + ID  NI KA+L+A+  A+  L V P+ AL DGR +P  LPC+  A+IKGD
Sbjct: 64  VSMASISAEGIDGSNILKASLEAMRRALVGLSVRPKLALADGRDVPPGLPCEGRALIKGD 123

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC-IHRL 199
             S SIAAASI+AKV RDR+M         YGF+ H+GY TA+H+  I+  GP   +HR+
Sbjct: 124 QRSQSIAAASIVAKVMRDRMMCGCGSHNGRYGFEVHMGYATARHRTAIEAHGPVARLHRV 183

Query: 200 TFRPLR 205
           +F P R
Sbjct: 184 SFSPFR 189


>gi|323135966|ref|ZP_08071049.1| Ribonuclease H [Methylocystis sp. ATCC 49242]
 gi|322399057|gb|EFY01576.1| Ribonuclease H [Methylocystis sp. ATCC 49242]
          Length = 204

 Score =  182 bits (463), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 95/200 (47%), Positives = 134/200 (67%), Gaps = 2/200 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F LE  +R + +WPVAG+DEVGRG LAGPV  AA+ILDP  +P G+NDSK +  ++RE
Sbjct: 6   PDFRLEGRLRRQGVWPVAGVDEVGRGPLAGPVAAAAVILDPARLPLGVNDSKALGPRERE 65

Query: 70  ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
             +E+I S+A  +S++  +   ID  NI +A+L A+  AV  L + P   L+DGR  P  
Sbjct: 66  AAFERILSTAQAVSVAFVTPPEIDAMNIRQASLAAMARAVAGLSLAPAFVLVDGRD-PPP 124

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L C   A++KGD+++LSIAAASI+AKV RD +MR     YPDYGF+++ GY   +H   +
Sbjct: 125 LACHCRAIVKGDALALSIAAASIVAKVARDGMMRRLAAAYPDYGFETNAGYGARRHLDAL 184

Query: 189 KEKGPSCIHRLTFRPLRNLS 208
           +  GP+ +HR +F PLR+ S
Sbjct: 185 ERIGPTPVHRFSFAPLRDKS 204


>gi|163842670|ref|YP_001627074.1| ribonuclease HII [Brucella suis ATCC 23445]
 gi|189043569|sp|B0CK74|RNH2_BRUSI RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|163673393|gb|ABY37504.1| Ribonuclease HII [Brucella suis ATCC 23445]
          Length = 220

 Score =  182 bits (463), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 98/203 (48%), Positives = 138/203 (67%), Gaps = 2/203 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           +P  P F  E  + ++ +  +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ 
Sbjct: 14  LPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTA 73

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
            +RE LYE I + AI +S++S S + ID  +IHKA L+A+  AV  L + P  AL+DGR 
Sbjct: 74  ARREALYEIILTKAITVSVASLSARSIDASDIHKAALEAMRRAVIGLTLKPCHALVDGRD 133

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +P  LPC   A++KGD  S+SIAAASI+AKVTRDR+M  A   +P YG + H GY T KH
Sbjct: 134 VPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQKH 193

Query: 185 QQVIKEKGP-SCIHRLTFRPLRN 206
           +  I+ +GP   +HR TF P++ 
Sbjct: 194 RAAIESEGPVPGLHRYTFAPIKG 216


>gi|255261565|ref|ZP_05340907.1| ribonuclease HII [Thalassiobium sp. R2A62]
 gi|255103900|gb|EET46574.1| ribonuclease HII [Thalassiobium sp. R2A62]
          Length = 205

 Score =  182 bits (463), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/196 (47%), Positives = 131/196 (66%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           FE E          V G+DEVGRG LAGPV  AA+ LDPN IP G+NDSKK+S KKR+ L
Sbjct: 5   FEFERAAMADGALRVVGVDEVGRGPLAGPVTAAAVWLDPNAIPEGLNDSKKLSAKKRDAL 64

Query: 72  YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           Y ++   A +SI+ A+ + ID+HNI +A+  A+  AVE L V P  ALIDG  +P   P 
Sbjct: 65  YAELLQVADVSIAHATVEEIDEHNILRASHIAMIRAVEGLAVAPDYALIDGNMVPRGFPI 124

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           Q+  +IKGD+ S+SI+AASI+AKV RD +M    +++P+YG+DS+ GYP+  H+  + + 
Sbjct: 125 QSQTIIKGDARSVSISAASIMAKVCRDYVMVDLAQQHPEYGWDSNAGYPSKSHKNALLKY 184

Query: 192 GPSCIHRLTFRPLRNL 207
           G +  HR +F+P+ N+
Sbjct: 185 GVTPHHRRSFKPVHNI 200


>gi|84687971|ref|ZP_01015835.1| ribonuclease HII [Maritimibacter alkaliphilus HTCC2654]
 gi|84664003|gb|EAQ10503.1| ribonuclease HII [Rhodobacterales bacterium HTCC2654]
          Length = 208

 Score =  182 bits (462), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 94/200 (47%), Positives = 132/200 (66%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           + P +  E     + +  VAG+DEVGRG LAGPV  AA+IL P+NIP G+NDSKK+S KK
Sbjct: 3   DGPDYSYETAAFARGLARVAGVDEVGRGPLAGPVTAAAVILGPDNIPDGLNDSKKLSAKK 62

Query: 68  REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           R+ L++ I + A + I+ A+ + ID +NI +A+  A+  AVE L  +P   LIDG  IP 
Sbjct: 63  RDALFDAIMAGAQVGIAHATVEEIDTYNILRASHIAMLRAVEALGTVPDHLLIDGNLIPR 122

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
                A AVIKGD  SLSIAAASI+AKVTRDR+M    +++P YG++ + GYP+  H   
Sbjct: 123 GCTVSAEAVIKGDGKSLSIAAASIVAKVTRDRIMVDLAQQHPGYGWERNAGYPSKSHISA 182

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           ++E G +  HR +F+P+ N+
Sbjct: 183 LQELGVTPHHRRSFKPVHNI 202


>gi|27377632|ref|NP_769161.1| ribonuclease HII [Bradyrhizobium japonicum USDA 110]
 gi|39932385|sp|Q89S84|RNH2_BRAJA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|27350777|dbj|BAC47786.1| ribonuclease HII [Bradyrhizobium japonicum USDA 110]
          Length = 261

 Score =  182 bits (462), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 95/201 (47%), Positives = 129/201 (64%), Gaps = 1/201 (0%)

Query: 4   NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
            + P +  F  E  + ++ +WPVAG DE GRG LAGPVV AA+ILDP+ IP GI+DSK++
Sbjct: 22  EAAPVKASFRRERALIKRGIWPVAGCDEAGRGPLAGPVVAAAVILDPDRIPRGIDDSKRL 81

Query: 64  SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
           + ++RE+L++KI ++A +S++ AS   ID+ NI +A+L A+  AV  L   PR   +DGR
Sbjct: 82  TAEQREKLFDKICATAQVSVAVASPARIDRDNILRASLWALKRAVVALPEAPRHVFVDGR 141

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
               D  C   AVI GD I LSIAAASI+AKVTRDRLM    +  P YGF+ H GY   +
Sbjct: 142 D-RLDTACDCEAVIGGDGIVLSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYGVPE 200

Query: 184 HQQVIKEKGPSCIHRLTFRPL 204
           H   +   GP+  HR  F P+
Sbjct: 201 HLDALNRLGPTVHHRSFFAPV 221


>gi|110633060|ref|YP_673268.1| ribonuclease HII [Mesorhizobium sp. BNC1]
 gi|110284044|gb|ABG62103.1| RNase HII [Chelativorans sp. BNC1]
          Length = 258

 Score =  181 bits (460), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 97/203 (47%), Positives = 136/203 (66%), Gaps = 2/203 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           +P RP F +E  +  + + PVAG+DE GRG LAGPVV AA++LDP+ IP G++DSK+++ 
Sbjct: 19  LPVRPDFTIEWKIMREGLAPVAGLDEAGRGPLAGPVVAAAVVLDPDRIPEGLDDSKRLTA 78

Query: 66  KKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           + RE L ++I   +A +S++S     ID+ NI KA+L+A+  A++ L V P  AL DGR 
Sbjct: 79  EARERLVQEIFEVAAAVSVASLCAASIDESNILKASLEAMRRALDGLCVRPAYALADGRD 138

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           IP  LPC   AV+KGD  S SIAAAS++AKV RDR+M       P YGF SHVGY T +H
Sbjct: 139 IPPGLPCPCRAVVKGDQRSQSIAAASMVAKVVRDRMMVRTGTLMPHYGFHSHVGYATERH 198

Query: 185 QQVIKEKGP-SCIHRLTFRPLRN 206
           ++ I   GP + +HR++F P + 
Sbjct: 199 REAITAYGPVTRLHRMSFSPFKT 221


>gi|189043695|sp|Q11KH2|RNH2_MESSB RecName: Full=Ribonuclease HII; Short=RNase HII
          Length = 253

 Score =  181 bits (460), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 97/203 (47%), Positives = 136/203 (66%), Gaps = 2/203 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           +P RP F +E  +  + + PVAG+DE GRG LAGPVV AA++LDP+ IP G++DSK+++ 
Sbjct: 14  LPVRPDFTIEWKIMREGLAPVAGLDEAGRGPLAGPVVAAAVVLDPDRIPEGLDDSKRLTA 73

Query: 66  KKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           + RE L ++I   +A +S++S     ID+ NI KA+L+A+  A++ L V P  AL DGR 
Sbjct: 74  EARERLVQEIFEVAAAVSVASLCAASIDESNILKASLEAMRRALDGLCVRPAYALADGRD 133

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           IP  LPC   AV+KGD  S SIAAAS++AKV RDR+M       P YGF SHVGY T +H
Sbjct: 134 IPPGLPCPCRAVVKGDQRSQSIAAASMVAKVVRDRMMVRTGTLMPHYGFHSHVGYATERH 193

Query: 185 QQVIKEKGP-SCIHRLTFRPLRN 206
           ++ I   GP + +HR++F P + 
Sbjct: 194 REAITAYGPVTRLHRMSFSPFKT 216


>gi|189043614|sp|A4YPP8|RNH2_BRASO RecName: Full=Ribonuclease HII; Short=RNase HII
          Length = 277

 Score =  180 bits (457), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 1/195 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E  + ++ +WPVAG DE GRG LAGPVV AA+ILDPN IP G++DSK++S ++RE
Sbjct: 50  PSFRRERALLKQGIWPVAGCDEAGRGPLAGPVVAAAVILDPNRIPKGLDDSKRLSAEQRE 109

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L++KI  ++  +++ AS   ID+ NI +A+L A+  AV  L   P+   +DGR    D+
Sbjct: 110 ALFDKICKTSAFAVAYASPTRIDRDNILRASLWALSRAVRALPEAPKHVFVDGRDR-IDV 168

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C   AVI GD + +SIAAASI+AKVTRDRLM    +  P YGF+ H GY   +H   + 
Sbjct: 169 DCNCEAVIGGDGLVMSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYAVPEHLAALD 228

Query: 190 EKGPSCIHRLTFRPL 204
             GPS  HR  F P+
Sbjct: 229 RLGPSVHHRSLFAPV 243


>gi|146339063|ref|YP_001204111.1| ribonuclease HII [Bradyrhizobium sp. ORS278]
 gi|146191869|emb|CAL75874.1| Ribonuclease HII [Bradyrhizobium sp. ORS278]
          Length = 289

 Score =  180 bits (457), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 1/195 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E  + ++ +WPVAG DE GRG LAGPVV AA+ILDPN IP G++DSK++S ++RE
Sbjct: 62  PSFRRERALLKQGIWPVAGCDEAGRGPLAGPVVAAAVILDPNRIPKGLDDSKRLSAEQRE 121

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L++KI  ++  +++ AS   ID+ NI +A+L A+  AV  L   P+   +DGR    D+
Sbjct: 122 ALFDKICKTSAFAVAYASPTRIDRDNILRASLWALSRAVRALPEAPKHVFVDGRDR-IDV 180

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C   AVI GD + +SIAAASI+AKVTRDRLM    +  P YGF+ H GY   +H   + 
Sbjct: 181 DCNCEAVIGGDGLVMSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYAVPEHLAALD 240

Query: 190 EKGPSCIHRLTFRPL 204
             GPS  HR  F P+
Sbjct: 241 RLGPSVHHRSLFAPV 255


>gi|62289376|ref|YP_221169.1| ribonuclease HII [Brucella abortus bv. 1 str. 9-941]
 gi|82699301|ref|YP_413875.1| ribonuclease HII [Brucella melitensis biovar Abortus 2308]
 gi|237814863|ref|ZP_04593861.1| Ribonuclease HII [Brucella abortus str. 2308 A]
 gi|254688691|ref|ZP_05151945.1| ribonuclease HII [Brucella abortus bv. 6 str. 870]
 gi|254696818|ref|ZP_05158646.1| ribonuclease HII [Brucella abortus bv. 2 str. 86/8/59]
 gi|254729725|ref|ZP_05188303.1| ribonuclease HII [Brucella abortus bv. 4 str. 292]
 gi|256256938|ref|ZP_05462474.1| ribonuclease HII [Brucella abortus bv. 9 str. C68]
 gi|260545871|ref|ZP_05821612.1| ribonuclease HII [Brucella abortus NCTC 8038]
 gi|260754167|ref|ZP_05866515.1| ribonuclease HII [Brucella abortus bv. 6 str. 870]
 gi|260757387|ref|ZP_05869735.1| ribonuclease HII [Brucella abortus bv. 4 str. 292]
 gi|260761211|ref|ZP_05873554.1| ribonuclease HII [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883192|ref|ZP_05894806.1| ribonuclease HII [Brucella abortus bv. 9 str. C68]
 gi|297247789|ref|ZP_06931507.1| ribonuclease HII [Brucella abortus bv. 5 str. B3196]
 gi|73917601|sp|Q57EX6|RNH2_BRUAB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|97182300|sp|Q2YMC3|RNH2_BRUA2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|62195508|gb|AAX73808.1| RnhB, ribonuclease HII [Brucella abortus bv. 1 str. 9-941]
 gi|82615402|emb|CAJ10371.1| Ribonuclease HII/HIII [Brucella melitensis biovar Abortus 2308]
 gi|237789700|gb|EEP63910.1| Ribonuclease HII [Brucella abortus str. 2308 A]
 gi|260097278|gb|EEW81153.1| ribonuclease HII [Brucella abortus NCTC 8038]
 gi|260667705|gb|EEX54645.1| ribonuclease HII [Brucella abortus bv. 4 str. 292]
 gi|260671643|gb|EEX58464.1| ribonuclease HII [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674275|gb|EEX61096.1| ribonuclease HII [Brucella abortus bv. 6 str. 870]
 gi|260872720|gb|EEX79789.1| ribonuclease HII [Brucella abortus bv. 9 str. C68]
 gi|297174958|gb|EFH34305.1| ribonuclease HII [Brucella abortus bv. 5 str. B3196]
          Length = 220

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 97/203 (47%), Positives = 137/203 (67%), Gaps = 2/203 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           +P  P F  E  + ++ +  +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ 
Sbjct: 14  LPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTA 73

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
            +RE LYE I + AI +S++S S + ID  +I KA L+A+  AV  L + P  AL+DGR 
Sbjct: 74  ARREALYEIILTKAITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRD 133

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +P  LPC   A++KGD  S+SIAAASI+AKVTRDR+M  A   +P YG + H GY T KH
Sbjct: 134 VPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQKH 193

Query: 185 QQVIKEKGP-SCIHRLTFRPLRN 206
           +  I+ +GP   +HR TF P++ 
Sbjct: 194 RAAIESEGPVPGLHRYTFAPIKG 216


>gi|17987825|ref|NP_540459.1| ribonuclease HII [Brucella melitensis bv. 1 str. 16M]
 gi|23501290|ref|NP_697417.1| ribonuclease HII [Brucella suis 1330]
 gi|161618362|ref|YP_001592249.1| ribonuclease HII [Brucella canis ATCC 23365]
 gi|225626901|ref|ZP_03784940.1| Ribonuclease HII [Brucella ceti str. Cudo]
 gi|225851926|ref|YP_002732159.1| ribonuclease HII [Brucella melitensis ATCC 23457]
 gi|254701198|ref|ZP_05163026.1| ribonuclease HII [Brucella suis bv. 5 str. 513]
 gi|254703743|ref|ZP_05165571.1| ribonuclease HII [Brucella suis bv. 3 str. 686]
 gi|254707877|ref|ZP_05169705.1| ribonuclease HII [Brucella pinnipedialis M163/99/10]
 gi|254709539|ref|ZP_05171350.1| ribonuclease HII [Brucella pinnipedialis B2/94]
 gi|254713044|ref|ZP_05174855.1| ribonuclease HII [Brucella ceti M644/93/1]
 gi|254716603|ref|ZP_05178414.1| ribonuclease HII [Brucella ceti M13/05/1]
 gi|256031033|ref|ZP_05444647.1| ribonuclease HII [Brucella pinnipedialis M292/94/1]
 gi|256044108|ref|ZP_05447019.1| ribonuclease HII [Brucella melitensis bv. 1 str. Rev.1]
 gi|256060525|ref|ZP_05450694.1| ribonuclease HII [Brucella neotomae 5K33]
 gi|256112906|ref|ZP_05453822.1| ribonuclease HII [Brucella melitensis bv. 3 str. Ether]
 gi|256159091|ref|ZP_05456917.1| ribonuclease HII [Brucella ceti M490/95/1]
 gi|256254436|ref|ZP_05459972.1| ribonuclease HII [Brucella ceti B1/94]
 gi|256264562|ref|ZP_05467094.1| ribonuclease HII [Brucella melitensis bv. 2 str. 63/9]
 gi|256368842|ref|YP_003106348.1| ribonuclease HII [Brucella microti CCM 4915]
 gi|260168165|ref|ZP_05754976.1| ribonuclease HII [Brucella sp. F5/99]
 gi|260563467|ref|ZP_05833953.1| ribonuclease HII [Brucella melitensis bv. 1 str. 16M]
 gi|260567002|ref|ZP_05837472.1| ribonuclease HII [Brucella suis bv. 4 str. 40]
 gi|261218402|ref|ZP_05932683.1| ribonuclease HII [Brucella ceti M13/05/1]
 gi|261221604|ref|ZP_05935885.1| ribonuclease HII [Brucella ceti B1/94]
 gi|261315368|ref|ZP_05954565.1| ribonuclease HII [Brucella pinnipedialis M163/99/10]
 gi|261317065|ref|ZP_05956262.1| ribonuclease HII [Brucella pinnipedialis B2/94]
 gi|261320749|ref|ZP_05959946.1| ribonuclease HII [Brucella ceti M644/93/1]
 gi|261324519|ref|ZP_05963716.1| ribonuclease HII [Brucella neotomae 5K33]
 gi|261751735|ref|ZP_05995444.1| ribonuclease HII [Brucella suis bv. 5 str. 513]
 gi|261754388|ref|ZP_05998097.1| ribonuclease HII [Brucella suis bv. 3 str. 686]
 gi|261757623|ref|ZP_06001332.1| ribonuclease HII [Brucella sp. F5/99]
 gi|265988103|ref|ZP_06100660.1| ribonuclease HII [Brucella pinnipedialis M292/94/1]
 gi|265990520|ref|ZP_06103077.1| ribonuclease HII [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994348|ref|ZP_06106905.1| ribonuclease HII [Brucella melitensis bv. 3 str. Ether]
 gi|265997568|ref|ZP_06110125.1| ribonuclease HII [Brucella ceti M490/95/1]
 gi|61234184|sp|P0A4D9|RNH2_BRUME RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|61234188|sp|P0A4E0|RNH2_BRUSU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|189043568|sp|A9M8G2|RNH2_BRUC2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807968|sp|C0RH97|RNH2_BRUMB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|2984785|gb|AAC08032.1| ribonuclease HII [Brucella melitensis]
 gi|17983553|gb|AAL52723.1| ribonuclease hii [Brucella melitensis bv. 1 str. 16M]
 gi|23347178|gb|AAN29332.1| ribonuclease HII [Brucella suis 1330]
 gi|161335173|gb|ABX61478.1| Ribonuclease HII [Brucella canis ATCC 23365]
 gi|225618558|gb|EEH15601.1| Ribonuclease HII [Brucella ceti str. Cudo]
 gi|225640291|gb|ACO00205.1| Ribonuclease HII [Brucella melitensis ATCC 23457]
 gi|255999000|gb|ACU47399.1| ribonuclease HII [Brucella microti CCM 4915]
 gi|260153483|gb|EEW88575.1| ribonuclease HII [Brucella melitensis bv. 1 str. 16M]
 gi|260156520|gb|EEW91600.1| ribonuclease HII [Brucella suis bv. 4 str. 40]
 gi|260920188|gb|EEX86841.1| ribonuclease HII [Brucella ceti B1/94]
 gi|260923491|gb|EEX90059.1| ribonuclease HII [Brucella ceti M13/05/1]
 gi|261293439|gb|EEX96935.1| ribonuclease HII [Brucella ceti M644/93/1]
 gi|261296288|gb|EEX99784.1| ribonuclease HII [Brucella pinnipedialis B2/94]
 gi|261300499|gb|EEY03996.1| ribonuclease HII [Brucella neotomae 5K33]
 gi|261304394|gb|EEY07891.1| ribonuclease HII [Brucella pinnipedialis M163/99/10]
 gi|261737607|gb|EEY25603.1| ribonuclease HII [Brucella sp. F5/99]
 gi|261741488|gb|EEY29414.1| ribonuclease HII [Brucella suis bv. 5 str. 513]
 gi|261744141|gb|EEY32067.1| ribonuclease HII [Brucella suis bv. 3 str. 686]
 gi|262552036|gb|EEZ08026.1| ribonuclease HII [Brucella ceti M490/95/1]
 gi|262765461|gb|EEZ11250.1| ribonuclease HII [Brucella melitensis bv. 3 str. Ether]
 gi|263001304|gb|EEZ13879.1| ribonuclease HII [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094927|gb|EEZ18635.1| ribonuclease HII [Brucella melitensis bv. 2 str. 63/9]
 gi|264660300|gb|EEZ30561.1| ribonuclease HII [Brucella pinnipedialis M292/94/1]
 gi|326408425|gb|ADZ65490.1| ribonuclease HII [Brucella melitensis M28]
 gi|326538139|gb|ADZ86354.1| ribonuclease HII [Brucella melitensis M5-90]
          Length = 220

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 97/203 (47%), Positives = 137/203 (67%), Gaps = 2/203 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           +P  P F  E  + ++ +  +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ 
Sbjct: 14  LPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTA 73

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
            +RE LYE I + AI +S++S S + ID  +I KA L+A+  AV  L + P  AL+DGR 
Sbjct: 74  ARREALYEIILTKAITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRD 133

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +P  LPC   A++KGD  S+SIAAASI+AKVTRDR+M  A   +P YG + H GY T KH
Sbjct: 134 VPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQKH 193

Query: 185 QQVIKEKGP-SCIHRLTFRPLRN 206
           +  I+ +GP   +HR TF P++ 
Sbjct: 194 RAAIESEGPVPGLHRYTFAPIKG 216


>gi|189043613|sp|A5EEC1|RNH2_BRASB RecName: Full=Ribonuclease HII; Short=RNase HII
          Length = 289

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 1/195 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E  + ++ +WPVAG DE GRG LAGPVV AA+ILDPN IP G++DSK++S ++RE
Sbjct: 62  PSFRRERALLKQGIWPVAGCDEAGRGPLAGPVVAAAVILDPNRIPKGLDDSKRLSAEQRE 121

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L++KI  ++  +++ AS   ID+ NI +A+L A+  AV  L   P+   +DGR    D+
Sbjct: 122 ALFDKICKTSAFAVAFASPARIDRDNILRASLWALSRAVRALPEAPKHVFVDGRDR-IDV 180

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C   AVI GD + +SIAAASI+AKVTRDRLM    +  P YGF+ H GY   +H   + 
Sbjct: 181 DCHCEAVIGGDGLVMSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYGVPEHLAALD 240

Query: 190 EKGPSCIHRLTFRPL 204
             GPS  HR  F P+
Sbjct: 241 RLGPSVHHRSLFAPV 255


>gi|306842323|ref|ZP_07474982.1| ribonuclease HII [Brucella sp. BO2]
 gi|306287539|gb|EFM58998.1| ribonuclease HII [Brucella sp. BO2]
          Length = 220

 Score =  179 bits (455), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 97/203 (47%), Positives = 137/203 (67%), Gaps = 2/203 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           +P  P F  E  + ++ +  +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ 
Sbjct: 14  LPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTA 73

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
            +RE LYE I + AI +S++S S + ID  +I KA L+A+  AV  L + P  AL+DGR 
Sbjct: 74  ARREALYEIILTKAITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRD 133

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +P  LPC   A++KGD  S+SIAAASI+AKVTRDR+M  A   +P YG + H GY T KH
Sbjct: 134 VPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYGTQKH 193

Query: 185 QQVIKEKGP-SCIHRLTFRPLRN 206
           +  I+ +GP   +HR TF P++ 
Sbjct: 194 RAAIESEGPVPGLHRYTFAPIKG 216


>gi|148253836|ref|YP_001238421.1| ribonuclease HII [Bradyrhizobium sp. BTAi1]
 gi|146406009|gb|ABQ34515.1| RNase HII [Bradyrhizobium sp. BTAi1]
          Length = 292

 Score =  179 bits (455), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 1/195 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E  + ++ +WPVAG DE GRG LAGPVV AA+ILDPN IP G++DSK++S ++RE
Sbjct: 65  PSFRRERALLKQGIWPVAGCDEAGRGPLAGPVVAAAVILDPNRIPKGLDDSKRLSAEQRE 124

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L++KI  ++  +++ AS   ID+ NI +A+L A+  AV  L   P+   +DGR    D+
Sbjct: 125 ALFDKICKTSAFAVAFASPARIDRDNILRASLWALSRAVRALPEAPKHVFVDGRDR-IDV 183

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C   AVI GD + +SIAAASI+AKVTRDRLM    +  P YGF+ H GY   +H   + 
Sbjct: 184 DCHCEAVIGGDGLVMSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYGVPEHLAALD 243

Query: 190 EKGPSCIHRLTFRPL 204
             GPS  HR  F P+
Sbjct: 244 RLGPSVHHRSLFAPV 258


>gi|114705285|ref|ZP_01438193.1| ribonuclease HII protein [Fulvimarina pelagi HTCC2506]
 gi|114540070|gb|EAU43190.1| ribonuclease HII protein [Fulvimarina pelagi HTCC2506]
          Length = 245

 Score =  179 bits (453), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 97/197 (49%), Positives = 131/197 (66%), Gaps = 1/197 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD-PNNIPFGINDSKKISHKKR 68
           P F  E  + E     +AG+DEVGRG LAGPVV AA+I + P  IP GINDSK+++ K R
Sbjct: 19  PDFSREHALLEAGAEWIAGVDEVGRGPLAGPVVAAAVIFENPRRIPVGINDSKQLTAKAR 78

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           E+L+  I ++A ++I+S S + ID  +I +ATL A+  A+  L + P  AL DGR +P  
Sbjct: 79  EQLFADILANAHVAIASVSAKEIDAIDIRQATLTAMTKALAQLVIRPCHALFDGRDVPPA 138

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
                 A++KGDSIS+SIAAASI+AKV RDR+M+ A   YP YGF ++VGY  A H   I
Sbjct: 139 WTANGTAIVKGDSISVSIAAASIVAKVQRDRMMQHACGLYPGYGFTTNVGYGCAAHLAAI 198

Query: 189 KEKGPSCIHRLTFRPLR 205
              GP+ IHR++F+PLR
Sbjct: 199 AALGPTPIHRMSFKPLR 215


>gi|254693174|ref|ZP_05155002.1| ribonuclease HII [Brucella abortus bv. 3 str. Tulya]
 gi|261213414|ref|ZP_05927695.1| ribonuclease HII [Brucella abortus bv. 3 str. Tulya]
 gi|260915021|gb|EEX81882.1| ribonuclease HII [Brucella abortus bv. 3 str. Tulya]
          Length = 220

 Score =  178 bits (452), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 96/203 (47%), Positives = 136/203 (66%), Gaps = 2/203 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           +P  P F  E  + ++ +  +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ 
Sbjct: 14  LPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTA 73

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
            +RE LYE I + AI +S++S S + ID  +I KA L+A+  AV  L + P  AL+DGR 
Sbjct: 74  ARREALYEIILTKAITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRD 133

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +P  LPC   A++KGD   +SIAAASI+AKVTRDR+M  A   +P YG + H GY T KH
Sbjct: 134 VPPGLPCPGSALVKGDQRCVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQKH 193

Query: 185 QQVIKEKGP-SCIHRLTFRPLRN 206
           +  I+ +GP   +HR TF P++ 
Sbjct: 194 RAAIESEGPVPGLHRYTFAPIKG 216


>gi|307941608|ref|ZP_07656963.1| ribonuclease HII [Roseibium sp. TrichSKD4]
 gi|307775216|gb|EFO34422.1| ribonuclease HII [Roseibium sp. TrichSKD4]
          Length = 216

 Score =  178 bits (451), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 88/180 (48%), Positives = 118/180 (65%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           +AG+DE GRG  AGPVV AA+ILD + +P G+ DSKK+S  KREEL+ +I   A +S++S
Sbjct: 33  LAGVDEAGRGPWAGPVVTAAVILDYDKVPSGLTDSKKLSEAKREELFPQICEHAFVSVAS 92

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A  + ID  NI  ATL+A+  AV  L   PR  +IDGR +P  L     A++KGDS  L+
Sbjct: 93  AGPKTIDLENIRTATLNAMVRAVSGLAFPPRYVMIDGRDVPFGLSAPGQALVKGDSRCLA 152

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           +AAASI+AKV RDR+M    +  P+YGF  H GY    HQ  + E GPS  HR +F+P++
Sbjct: 153 VAAASIVAKVMRDRMMVRLDQIAPEYGFAQHKGYGVPAHQAALSEHGPSIHHRFSFKPVQ 212


>gi|254718570|ref|ZP_05180381.1| ribonuclease HII [Brucella sp. 83/13]
 gi|265983545|ref|ZP_06096280.1| ribonuclease HII [Brucella sp. 83/13]
 gi|264662137|gb|EEZ32398.1| ribonuclease HII [Brucella sp. 83/13]
          Length = 220

 Score =  178 bits (451), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 97/203 (47%), Positives = 136/203 (66%), Gaps = 2/203 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           +P  P F  E  + ++    +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ 
Sbjct: 14  LPLAPDFSQEQQLMKRGSKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTA 73

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
            +RE LYE I + AI +S++S S + ID  +I KA L+A+  AV  L + P  AL+DGR 
Sbjct: 74  ARREALYEIILAKAIAVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRD 133

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +P  LPC   A++KGD  S+SIAAASI+AKVTRDR+M  A   +P YG + H GY T KH
Sbjct: 134 VPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYGTQKH 193

Query: 185 QQVIKEKGP-SCIHRLTFRPLRN 206
           +  I+ +GP   +HR TF P++ 
Sbjct: 194 RAAIESEGPVPGLHRYTFAPIKG 216


>gi|254503735|ref|ZP_05115886.1| ribonuclease HII [Labrenzia alexandrii DFL-11]
 gi|222439806|gb|EEE46485.1| ribonuclease HII [Labrenzia alexandrii DFL-11]
          Length = 218

 Score =  177 bits (450), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 89/205 (43%), Positives = 125/205 (60%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           +F  + P+ P  ++E    +     + G+DE GRG  AGPVV AA+ILD  N+P G+NDS
Sbjct: 7   LFDLAFPDNPDLKIEKKHAKSYDGLLCGVDEAGRGPWAGPVVTAAVILDYANVPAGLNDS 66

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           KK++  KRE L+ +I  ++ +  +SAS   +DK NI  ATL A+  AV  L  +P+  LI
Sbjct: 67  KKLTEAKRESLFGEILKTSWVCAASASPATVDKLNIRTATLSAMVRAVNGLPRVPQYVLI 126

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DGR +P  L     A+IKGD   L +AAASI+AKV RDR+M     ++P YGF  H GY 
Sbjct: 127 DGRDVPPGLAQPGQALIKGDGRCLCVAAASIVAKVLRDRMMVALEPEFPGYGFAQHKGYG 186

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLR 205
              HQ  +   GP+  HR++F+P+R
Sbjct: 187 VPAHQAALDTLGPTAHHRMSFKPVR 211


>gi|148560173|ref|YP_001258413.1| ribonuclease HII [Brucella ovis ATCC 25840]
 gi|294851769|ref|ZP_06792442.1| ribonuclease HII [Brucella sp. NVSL 07-0026]
 gi|166225171|sp|A5VNW6|RNH2_BRUO2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|148371430|gb|ABQ61409.1| ribonuclease HII [Brucella ovis ATCC 25840]
 gi|294820358|gb|EFG37357.1| ribonuclease HII [Brucella sp. NVSL 07-0026]
          Length = 220

 Score =  177 bits (448), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 96/203 (47%), Positives = 136/203 (66%), Gaps = 2/203 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           +P  P F  E  + ++ +  +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ 
Sbjct: 14  LPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTA 73

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
            +RE LYE I + AI +S++S S + ID  +I KA L+A+  AV  L + P  AL+DGR 
Sbjct: 74  ARREALYEIILTKAITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRD 133

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +P  L C   A++KGD  S+SIAAASI+AKVTRDR+M  A   +P YG + H GY T KH
Sbjct: 134 VPPGLSCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQKH 193

Query: 185 QQVIKEKGP-SCIHRLTFRPLRN 206
           +  I+ +GP   +HR TF P++ 
Sbjct: 194 RAAIESEGPVPGLHRYTFAPIKG 216


>gi|153007852|ref|YP_001369067.1| ribonuclease HII [Ochrobactrum anthropi ATCC 49188]
 gi|166226633|sp|A6WW84|RNH2_OCHA4 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|151559740|gb|ABS13238.1| Ribonuclease H [Ochrobactrum anthropi ATCC 49188]
          Length = 220

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/203 (48%), Positives = 132/203 (65%), Gaps = 2/203 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           IP  P F  E  +  + +  + GIDE GRG LAGPVV AA++LD +N+P G++DSK+++ 
Sbjct: 14  IPLAPDFSEEKRLLARGLKHIVGIDEAGRGPLAGPVVAAAVVLDIDNLPNGLDDSKRLTA 73

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
            KRE LYE I   AI +S++S S + ID  +I KA L+A+  A   L + P  ALIDGR 
Sbjct: 74  VKREALYETILEKAITVSVASLSARSIDASDIRKAALEAMRRASVGLTLQPCHALIDGRD 133

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +P  LPC   A++KGD  S+SIAAASI+AKVTRDR+M  A   +P YG + H GY T KH
Sbjct: 134 VPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATVKH 193

Query: 185 QQVIKEKGP-SCIHRLTFRPLRN 206
           +  I+  GP   IHR TF P++ 
Sbjct: 194 RAAIETTGPVPGIHRYTFAPIKG 216


>gi|83950881|ref|ZP_00959614.1| ribonuclease HII [Roseovarius nubinhibens ISM]
 gi|83838780|gb|EAP78076.1| ribonuclease HII [Roseovarius nubinhibens ISM]
          Length = 209

 Score =  176 bits (445), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/198 (45%), Positives = 133/198 (67%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P +  E     +    VAG+DEVGRG LAGPV  AA++LDP  IP G+NDSK ++ K+RE
Sbjct: 3   PDYRFEDEAIAQGFGVVAGVDEVGRGPLAGPVTAAAVVLDPARIPAGLNDSKALTPKRRE 62

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L+++I + A +SI+ AS + ID+ NI +A+  A+  AV  L V    AL+DG  +P DL
Sbjct: 63  ALFDEIAAVAHVSIAHASVEEIDEINILRASHLAMERAVAGLPVAAGFALVDGNLLPRDL 122

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              A AVIKGD++SLSI+AASI+AK+ RDR+M    + YP YG++++ GYP+  H++ ++
Sbjct: 123 RIPARAVIKGDALSLSISAASIMAKICRDRIMWDLAQHYPGYGWETNAGYPSKSHKEALR 182

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G +  HR +F+P+ N+
Sbjct: 183 NLGVTPHHRRSFKPVHNI 200


>gi|326794449|ref|YP_004312269.1| ribonuclease H [Marinomonas mediterranea MMB-1]
 gi|326545213|gb|ADZ90433.1| Ribonuclease H [Marinomonas mediterranea MMB-1]
          Length = 203

 Score =  174 bits (442), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 97/181 (53%), Positives = 123/181 (67%), Gaps = 1/181 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DE GRG LAG VV AA+ILDP+    G+NDSKK+S KKRE LY +I   A+  SI+
Sbjct: 17  VAGVDEAGRGPLAGDVVAAAVILDPDLTIDGLNDSKKLSEKKRERLYSQIIEKALSFSIA 76

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID+ NI  A++ A+  AV +L V    ALIDG  IP DL C A AV+KGD+   
Sbjct: 77  RASVAEIDELNILHASMLAMTRAVNSLPVPAEHALIDGNRIPLDLKCPAEAVVKGDARHQ 136

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKVTRDR + +  +KYP+Y F+ H GYPTA H   IK+ G   IHR +F P+
Sbjct: 137 AIAAASILAKVTRDREIVLMAEKYPEYAFEKHKGYPTAVHLDAIKQHGVCEIHRTSFGPV 196

Query: 205 R 205
           +
Sbjct: 197 K 197


>gi|117923822|ref|YP_864439.1| RNase HII [Magnetococcus sp. MC-1]
 gi|189043692|sp|A0L4Z0|RNH2_MAGSM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|117607578|gb|ABK43033.1| RNase HII [Magnetococcus sp. MC-1]
          Length = 213

 Score =  174 bits (440), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 94/202 (46%), Positives = 129/202 (63%), Gaps = 4/202 (1%)

Query: 10  PHFELEAMVREKN--MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           P  ELE  +   N  +  + G+DE GRG L GPVV AA++LD +N+P G+NDSK++S KK
Sbjct: 9   PDLELECALLRSNRAIKTLCGVDEAGRGPLCGPVVAAAVVLDLDNLPVGLNDSKQLSAKK 68

Query: 68  REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ--VIPRSALIDGRSI 125
           RE+L+E+I  ++ + +  AS   ID  NI  A++ A+  AV  LQ  ++   ALIDG  +
Sbjct: 69  REQLFEQIYVTSQVGVGEASVAEIDALNILHASMLAMVRAVTALQGRLVVDHALIDGNRV 128

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  LP    AV+KGD+ SLSIAAASIIAKVTRDR+M    + YP YG+    GYPT  H 
Sbjct: 129 PATLPVPGQAVVKGDAKSLSIAAASIIAKVTRDRIMAELDRDYPHYGWAKSQGYPTQAHL 188

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
           Q +   G +  HR +F+P++ L
Sbjct: 189 QALALHGVTPHHRRSFKPVKQL 210


>gi|15598838|ref|NP_252332.1| ribonuclease HII [Pseudomonas aeruginosa PAO1]
 gi|37999786|sp|Q9HXY9|RNH2_PSEAE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|9949802|gb|AAG07030.1|AE004784_3 ribonuclease HII [Pseudomonas aeruginosa PAO1]
          Length = 201

 Score =  174 bits (440), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 96/184 (52%), Positives = 122/184 (66%), Gaps = 4/184 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L GPVV AA+ILDP+    G+NDSKK+S  +RE L+E+I   A+   I+
Sbjct: 14  VAGVDEVGRGPLCGPVVTAAVILDPSRPILGLNDSKKLSEARREALFEEIREKALAWCIA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            A  + ID+ NI  AT+ A+  AVE L VIPR ALIDG   P+  +PC    V+KGDS  
Sbjct: 74  RAEVEEIDRLNILHATMLAMQRAVEGLSVIPRLALIDGNRCPKLAVPCAP--VVKGDSQV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV+RDR M    + YP YG   H GYPTA H + +   GP+ IHR +F P
Sbjct: 132 PAIAAASILAKVSRDREMVELDRVYPGYGMAGHKGYPTAVHLEALSRLGPTPIHRRSFAP 191

Query: 204 LRNL 207
           +R L
Sbjct: 192 VREL 195


>gi|92118687|ref|YP_578416.1| ribonuclease HII [Nitrobacter hamburgensis X14]
 gi|122417043|sp|Q1QIJ1|RNH2_NITHX RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|91801581|gb|ABE63956.1| RNase HII [Nitrobacter hamburgensis X14]
          Length = 267

 Score =  174 bits (440), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 96/195 (49%), Positives = 129/195 (66%), Gaps = 1/195 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F+ E  + ++ +WPVAG DEVGRG LAGPVV AA++LDP  IP GI+DSK+++  +RE
Sbjct: 43  PSFQHERALLKRGVWPVAGCDEVGRGPLAGPVVAAAVVLDPKRIPKGIDDSKRLTAARRE 102

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           EL+E+IT++A  +++ AS   ID+ NI +A+L A+  AV  L  +PR   +DGR   E +
Sbjct: 103 ELFEEITATASFAVAFASTARIDRDNILRASLWALARAVHALPDMPRHVFVDGRDRIE-I 161

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C    VI GD I LSIAAASI+AKVTRDRLM    +  P YGF++H GY    H + + 
Sbjct: 162 ACACEPVIGGDGIVLSIAAASIVAKVTRDRLMCKLAQDCPGYGFETHKGYGVPAHLEALG 221

Query: 190 EKGPSCIHRLTFRPL 204
             GPS  HR  F P+
Sbjct: 222 RLGPSPHHRSFFAPV 236


>gi|296444554|ref|ZP_06886518.1| Ribonuclease H [Methylosinus trichosporium OB3b]
 gi|296257822|gb|EFH04885.1| Ribonuclease H [Methylosinus trichosporium OB3b]
          Length = 200

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 97/197 (49%), Positives = 128/197 (64%), Gaps = 2/197 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           PHF LE  +    +WPVAG+DE GRG LAGPV  AA+ILDP  +P G++DSK ++ + R 
Sbjct: 3   PHFRLETRLLRDGLWPVAGVDEAGRGPLAGPVAAAAVILDPRRLPEGVDDSKALTAEARA 62

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
             +E+I +SA+ I ++  S + ID  NI +ATL A+  AV  L + PR ALIDG   P  
Sbjct: 63  AAFERIAASALAIGVAFVSAEEIDAMNIRQATLAAMARAVAALSLAPRHALIDGND-PPS 121

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L C A A++KGD+  LSIAAASI+AKV RDR MR   + YP YGF ++ GY T +H   I
Sbjct: 122 LACPAEAIVKGDASCLSIAAASIVAKVMRDRQMRRLAELYPAYGFAANAGYGTKEHLAAI 181

Query: 189 KEKGPSCIHRLTFRPLR 205
              GP+  HR +F P+R
Sbjct: 182 AALGPTPHHRTSFSPMR 198


>gi|310817212|ref|YP_003965176.1| ribonuclease HII [Ketogulonicigenium vulgare Y25]
 gi|308755947|gb|ADO43876.1| ribonuclease HII [Ketogulonicigenium vulgare Y25]
          Length = 209

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 91/200 (45%), Positives = 133/200 (66%), Gaps = 2/200 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           +RP +  E   + +    VAG+DEVGRG LAGPV  AA+ILDP NIP G+NDSKK+S K+
Sbjct: 3   DRPDYSFELAAQARGFARVAGVDEVGRGPLAGPVTAAAVILDPANIPEGLNDSKKLSAKR 62

Query: 68  REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           R+ L+++I + A +SI+ A+   ID+ NI +A+  A+  A+  L       L+DG  +P+
Sbjct: 63  RDALFDQIMAVAQVSIAHATVAEIDEMNILRASHVAMCRALAGLPA--DYVLVDGNLLPK 120

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           DL   A A+I GD+ SLSIAAASIIAKV RDR+M    +++P YG++ + GYP+A H+  
Sbjct: 121 DLSLPAEALISGDARSLSIAAASIIAKVVRDRIMVDLAQQFPAYGWERNAGYPSAAHRAA 180

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           +   G +  HR +F+P+ N+
Sbjct: 181 LIAHGVTPHHRRSFKPVHNI 200


>gi|332686610|ref|YP_004456384.1| ribonuclease HII [Melissococcus plutonius ATCC 35311]
 gi|332370619|dbj|BAK21575.1| ribonuclease HII [Melissococcus plutonius ATCC 35311]
          Length = 260

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 97/198 (48%), Positives = 133/198 (67%), Gaps = 5/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            FE +AM  ++    +AGIDEVGRG LAGPVV AA+IL  +   F +NDSK++S K RE 
Sbjct: 64  QFEKKAM--QEGYQAIAGIDEVGRGPLAGPVVAAAVILPEDCQIFELNDSKQLSAKTRER 121

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L+++I   A+ I I   SH+ ID+ NI++AT  A+  AV NLQ IP   LID  ++P  L
Sbjct: 122 LFDEIGKKALAIGIGLVSHETIDEINIYQATKQAMIQAVANLQRIPDYLLIDAMTLP--L 179

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                ++IKGD+ SLSIAAASI+AKVTRDRLM     ++P YGF+ + GY T +H + +K
Sbjct: 180 TTIQQSIIKGDARSLSIAAASIVAKVTRDRLMVHYAAEFPGYGFEKNAGYGTKEHLEGLK 239

Query: 190 EKGPSCIHRLTFRPLRNL 207
           ++G S IHR TF P++ +
Sbjct: 240 KQGISPIHRKTFAPIKTM 257


>gi|229104399|ref|ZP_04235068.1| Ribonuclease [Bacillus cereus Rock3-28]
 gi|228679097|gb|EEL33305.1| Ribonuclease [Bacillus cereus Rock3-28]
          Length = 257

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 93/194 (47%), Positives = 129/194 (66%), Gaps = 3/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +REK +  +AGIDEVGRG LAGPVV AA++L  N    G++DSKK+S  KRE  Y++
Sbjct: 63  ENALREKGITYIAGIDEVGRGPLAGPVVTAAVVLPDNFYIPGLDDSKKLSEAKRERFYDE 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I + AI I +   S Q ID+ NI++AT  A+  AV NL   P+  LID   +P  +P   
Sbjct: 123 IKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPTSIP--Q 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF  H+GY T +H + I+  G 
Sbjct: 181 TSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPAYGFGQHMGYGTKQHLEAIEAHGV 240

Query: 194 SCIHRLTFRPLRNL 207
              HR +F P++++
Sbjct: 241 LEEHRKSFAPIKDM 254


>gi|189023629|ref|YP_001934397.1| ribonuclease HII [Brucella abortus S19]
 gi|189019201|gb|ACD71923.1| Ribonuclease HII/HIII [Brucella abortus S19]
          Length = 194

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 93/189 (49%), Positives = 131/189 (69%), Gaps = 2/189 (1%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
           ++ +  +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++  +RE LYE I + A
Sbjct: 2   KRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTAARREALYEIILTKA 61

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           I +S++S S + ID  +I KA L+A+  AV  L + P  AL+DGR +P  LPC   A++K
Sbjct: 62  ITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRDVPPGLPCPGSALVK 121

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIH 197
           GD  S+SIAAASI+AKVTRDR+M  A   +P YG + H GY T KH+  I+ +GP   +H
Sbjct: 122 GDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQKHRAAIESEGPVPGLH 181

Query: 198 RLTFRPLRN 206
           R TF P++ 
Sbjct: 182 RYTFAPIKG 190


>gi|228940925|ref|ZP_04103484.1| Ribonuclease [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228973854|ref|ZP_04134430.1| Ribonuclease [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228980444|ref|ZP_04140754.1| Ribonuclease [Bacillus thuringiensis Bt407]
 gi|228779264|gb|EEM27521.1| Ribonuclease [Bacillus thuringiensis Bt407]
 gi|228785879|gb|EEM33882.1| Ribonuclease [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228818761|gb|EEM64827.1| Ribonuclease [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|326941606|gb|AEA17502.1| ribonuclease HII [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 257

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/200 (47%), Positives = 133/200 (66%), Gaps = 6/200 (3%)

Query: 12  FEL---EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           FE+   E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KR
Sbjct: 57  FEMSKYENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKR 116

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E  Y++I   AI I +   S Q ID+ NI++AT  A+  AV NL   P+  LID   +P 
Sbjct: 117 ERFYDEIKVQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSYTPQHLLIDAMKLPT 176

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +P  +  +IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP+YGF+ H+GY T +H + 
Sbjct: 177 PIPQTS--IIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEA 234

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           I+  G    HR +F P++++
Sbjct: 235 IEVHGVLEEHRKSFAPIKDM 254


>gi|49082728|gb|AAT50764.1| PA3642 [synthetic construct]
          Length = 202

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/184 (51%), Positives = 121/184 (65%), Gaps = 4/184 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L GPVV AA+ILDP+    G+NDSKK+S  +RE L+E+I   A+   I+
Sbjct: 14  VAGVDEVGRGPLCGPVVTAAVILDPSRPILGLNDSKKLSEARREALFEEIREKALAWCIA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            A  + ID+ NI  AT+ A+  AVE L  IPR ALIDG   P+  +PC    V+KGDS  
Sbjct: 74  RAEVEEIDRLNILHATMLAMQRAVEGLSAIPRLALIDGNRCPKLAVPCAP--VVKGDSQV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV+RDR M    + YP YG   H GYPTA H + +   GP+ IHR +F P
Sbjct: 132 PAIAAASILAKVSRDREMVELDRVYPGYGMAGHKGYPTAVHLEALSRLGPTPIHRRSFAP 191

Query: 204 LRNL 207
           +R L
Sbjct: 192 VREL 195


>gi|107103156|ref|ZP_01367074.1| hypothetical protein PaerPA_01004225 [Pseudomonas aeruginosa PACS2]
 gi|218890133|ref|YP_002438997.1| ribonuclease HII [Pseudomonas aeruginosa LESB58]
 gi|254236556|ref|ZP_04929879.1| ribonuclease HII [Pseudomonas aeruginosa C3719]
 gi|254242340|ref|ZP_04935662.1| ribonuclease HII [Pseudomonas aeruginosa 2192]
 gi|226736823|sp|B7V7U6|RNH2_PSEA8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|126168487|gb|EAZ53998.1| ribonuclease HII [Pseudomonas aeruginosa C3719]
 gi|126195718|gb|EAZ59781.1| ribonuclease HII [Pseudomonas aeruginosa 2192]
 gi|218770356|emb|CAW26121.1| ribonuclease HII [Pseudomonas aeruginosa LESB58]
          Length = 201

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/184 (51%), Positives = 121/184 (65%), Gaps = 4/184 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L GPVV AA+ILDP+    G+NDSKK+S  +RE L+E+I   A+   I+
Sbjct: 14  VAGVDEVGRGPLCGPVVTAAVILDPSRPILGLNDSKKLSEARREALFEEIREKALAWCIA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            A  + ID+ NI  AT+ A+  AVE L V PR ALIDG   P+  +PC    V+KGDS  
Sbjct: 74  RAEVEEIDRLNILHATMLAMQRAVEGLSVTPRLALIDGNRCPKLAVPCAP--VVKGDSQV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV+RDR M    + YP YG   H GYPTA H + +   GP+ IHR +F P
Sbjct: 132 PAIAAASILAKVSRDREMVELDRVYPGYGMAGHKGYPTAVHLEALSRLGPTPIHRRSFAP 191

Query: 204 LRNL 207
           +R L
Sbjct: 192 VREL 195


>gi|163733084|ref|ZP_02140528.1| ribonuclease HII [Roseobacter litoralis Och 149]
 gi|161393619|gb|EDQ17944.1| ribonuclease HII [Roseobacter litoralis Och 149]
          Length = 209

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 88/198 (44%), Positives = 133/198 (67%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P+FE+E          VAG+DEVGRG LAGPV  AA++LDP NIP G+NDSK++S K+R 
Sbjct: 3   PNFEMEEAAMALGALRVAGVDEVGRGPLAGPVTAAAVVLDPANIPDGLNDSKQLSAKRRN 62

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L E + SSA IS+  AS + I++HNI +A+  A+  A+  L++ P   LIDG  +P+ L
Sbjct: 63  LLGEALASSADISVGHASVEEIEQHNILRASHIAMLRALAGLRLRPDYVLIDGSMVPKGL 122

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             +A  V+KGD+  LSI+AASIIAK+ RD++M    +++P YG+++++GY +  H   ++
Sbjct: 123 NLRAQPVVKGDTRCLSISAASIIAKIARDKIMVDLAQQHPGYGWETNMGYGSKSHISALR 182

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G +  HR TF+P+ ++
Sbjct: 183 NLGVTPHHRRTFKPVHHM 200


>gi|306845020|ref|ZP_07477601.1| ribonuclease HII [Brucella sp. BO1]
 gi|306274652|gb|EFM56441.1| ribonuclease HII [Brucella sp. BO1]
          Length = 194

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 93/189 (49%), Positives = 131/189 (69%), Gaps = 2/189 (1%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
           ++ +  +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++  +RE LYE I + A
Sbjct: 2   KRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTAARREALYEIILAKA 61

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           I +S++S S + ID  +I KA L+A+  AV  L + P  AL+DGR +P  LPC   A++K
Sbjct: 62  ITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRDVPPGLPCPGSALVK 121

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIH 197
           GD  S+SIAAASI+AKVTRDR+M  A   +P YG + H GY T KH+  I+ +GP   +H
Sbjct: 122 GDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYGTQKHRAAIESEGPVPGLH 181

Query: 198 RLTFRPLRN 206
           R TF P++ 
Sbjct: 182 RYTFAPIKG 190


>gi|257884857|ref|ZP_05664510.1| ribonuclease HII [Enterococcus faecium 1,231,501]
 gi|257820695|gb|EEV47843.1| ribonuclease HII [Enterococcus faecium 1,231,501]
          Length = 254

 Score =  172 bits (436), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 96/207 (46%), Positives = 132/207 (63%), Gaps = 13/207 (6%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           MFC        FE +    + + W +AGIDEVGRG LAGPVV AA+IL  N I  G+NDS
Sbjct: 58  MFC--------FEKQGYA-QGHQW-IAGIDEVGRGPLAGPVVAAAVILPKNEIILGLNDS 107

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           K++S KKRE LY+++   A+ I I     Q ID  NI++A+  A++ AVE L ++P   L
Sbjct: 108 KQLSEKKRELLYQQVQEKALAIGIGIVDQQTIDDVNIYEASKLAMFQAVEKLSIVPSYLL 167

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           ID  ++  DLP Q   +IKGD+ S+SIAAASIIAKV RD+LM+     YP YGF  + GY
Sbjct: 168 IDAMTL--DLPIQQEKIIKGDARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGY 225

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRN 206
            T +H + ++ +G + IHR +F P++ 
Sbjct: 226 GTKEHLEGLERQGITPIHRKSFAPVKK 252


>gi|228922591|ref|ZP_04085891.1| Ribonuclease [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228837020|gb|EEM82361.1| Ribonuclease [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 254

 Score =  172 bits (436), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 96/200 (48%), Positives = 132/200 (66%), Gaps = 6/200 (3%)

Query: 12  FEL---EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           FE+   E  +REK +  +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S  KR
Sbjct: 54  FEMSKYENALREKGVTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKR 113

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E  Y++I   AI I +   S Q ID  NI++AT  A+  AV NL   P+  LID   +P 
Sbjct: 114 ERFYDEIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT 173

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +P  +  +IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP+YGF+ H+GY T +H + 
Sbjct: 174 PIPQTS--IIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEA 231

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           I+  G    HR +F P++++
Sbjct: 232 IEVHGVLDEHRKSFAPIKDM 251


>gi|148265777|ref|YP_001232483.1| ribonuclease HII [Geobacter uraniireducens Rf4]
 gi|189043599|sp|A5G7Z2|RNH2_GEOUR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|146399277|gb|ABQ27910.1| RNase HII [Geobacter uraniireducens Rf4]
          Length = 216

 Score =  172 bits (436), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 101/203 (49%), Positives = 130/203 (64%), Gaps = 7/203 (3%)

Query: 8   ERPHF-ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISH 65
           ERP   E E++VR +    +AGIDE GRG LAGPVV AA+IL PN +   G+NDSKK+S 
Sbjct: 11  ERPSLLEFESLVRRQGYACIAGIDEAGRGPLAGPVVAAAVIL-PNGVELPGVNDSKKLSP 69

Query: 66  KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
            KR EL++ I +SA  + + S+    ID+ NI +ATL A+  AV  L + P   LIDG S
Sbjct: 70  VKRNELFDLIMASASAVGVGSSDAGLIDEINILQATLAAMKQAVSMLCIPPDYLLIDGIS 129

Query: 125 -IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +P  +P +   + KGDS+SLSIAAASIIAKV+RDRLM     ++P YGF +H GY    
Sbjct: 130 KVPLSIPQKT--IKKGDSLSLSIAAASIIAKVSRDRLMMDYETRFPGYGFAAHKGYGCVS 187

Query: 184 HQQVIKEKGPSCIHRLTFRPLRN 206
           H   I E GP  IHR TFR ++ 
Sbjct: 188 HMAAIAELGPCAIHRKTFRGVKE 210


>gi|218233890|ref|YP_002368638.1| ribonuclease HII [Bacillus cereus B4264]
 gi|226736814|sp|B7HDW0|RNH2_BACC4 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|218161847|gb|ACK61839.1| ribonuclease HII [Bacillus cereus B4264]
          Length = 257

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 95/200 (47%), Positives = 132/200 (66%), Gaps = 6/200 (3%)

Query: 12  FEL---EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           FE+   E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KR
Sbjct: 57  FEMSKYENALREKGITYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKR 116

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E  Y++I   AI I +   S Q ID  NI++AT  A+  AV NL   P+  LID   +P 
Sbjct: 117 ERFYDEIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT 176

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +P  +  +IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP+YGF+ H+GY T +H + 
Sbjct: 177 PIPQTS--IIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEA 234

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           I+  G    HR +F P++++
Sbjct: 235 IEVHGVLDEHRKSFAPIKDM 254


>gi|85705987|ref|ZP_01037083.1| ribonuclease HII [Roseovarius sp. 217]
 gi|85669575|gb|EAQ24440.1| ribonuclease HII [Roseovarius sp. 217]
          Length = 206

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 89/198 (44%), Positives = 129/198 (65%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E     +    +AG+DEVGRG LAGPV  AA+ILDP NIP G+NDSKK+S  +R 
Sbjct: 4   PDFSHEHTAHSQGYRRIAGVDEVGRGPLAGPVTAAAVILDPGNIPEGLNDSKKLSAARRA 63

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L   I ++A +S++ AS   ID+ NI +A+  A+  A+  L + P  ALIDG  IP  L
Sbjct: 64  ALCGVILATAHVSVAHASVDEIDRLNILRASHLAMERAIAGLGLAPDLALIDGNLIPRGL 123

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              A A+++GD+ISLSIAAASI+AK+ RD++M    +++P YG++ + GYP+  H+Q + 
Sbjct: 124 TLPARAIVRGDAISLSIAAASIVAKIRRDQIMWDLAQQFPGYGWERNAGYPSKSHKQALL 183

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G +  HR +F+P+ N+
Sbjct: 184 NLGVTPHHRRSFKPVHNI 201


>gi|306837307|ref|ZP_07470190.1| ribonuclease HII [Brucella sp. NF 2653]
 gi|306407620|gb|EFM63816.1| ribonuclease HII [Brucella sp. NF 2653]
          Length = 194

 Score =  172 bits (435), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 93/183 (50%), Positives = 128/183 (69%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++  +RE LYE I + AI +S++
Sbjct: 8   IAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTAARREALYEIILAKAIAVSVA 67

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           S S + ID  +I KA L+A+  AV  L + P  AL+DGR +P  LPC   A++KGD  S+
Sbjct: 68  SLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRDVPPGLPCPGSALVKGDQRSV 127

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHRLTFRP 203
           SIAAASI+AKVTRDR+M  A   +P YG + H GY T KH+  I+ +GP   +HR TF P
Sbjct: 128 SIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYGTQKHRAAIESEGPVPGLHRYTFAP 187

Query: 204 LRN 206
           ++ 
Sbjct: 188 IKG 190


>gi|228960053|ref|ZP_04121717.1| Ribonuclease [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|229047524|ref|ZP_04193114.1| Ribonuclease [Bacillus cereus AH676]
 gi|229111308|ref|ZP_04240861.1| Ribonuclease [Bacillus cereus Rock1-15]
 gi|229146408|ref|ZP_04274779.1| Ribonuclease [Bacillus cereus BDRD-ST24]
 gi|229152036|ref|ZP_04280231.1| Ribonuclease [Bacillus cereus m1550]
 gi|228631385|gb|EEK88019.1| Ribonuclease [Bacillus cereus m1550]
 gi|228637041|gb|EEK93500.1| Ribonuclease [Bacillus cereus BDRD-ST24]
 gi|228672084|gb|EEL27375.1| Ribonuclease [Bacillus cereus Rock1-15]
 gi|228723771|gb|EEL75126.1| Ribonuclease [Bacillus cereus AH676]
 gi|228799569|gb|EEM46522.1| Ribonuclease [Bacillus thuringiensis serovar pakistani str. T13001]
          Length = 254

 Score =  172 bits (435), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 95/200 (47%), Positives = 132/200 (66%), Gaps = 6/200 (3%)

Query: 12  FEL---EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           FE+   E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KR
Sbjct: 54  FEMSKYENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKR 113

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E  Y++I   AI I +   S Q ID  NI++AT  A+  AV NL   P+  LID   +P 
Sbjct: 114 ERFYDEIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT 173

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +P  +  +IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP+YGF+ H+GY T +H + 
Sbjct: 174 PIPQTS--IIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEA 231

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           I+  G    HR +F P++++
Sbjct: 232 IEVHGVLDEHRKSFAPIKDM 251


>gi|229098306|ref|ZP_04229253.1| Ribonuclease [Bacillus cereus Rock3-29]
 gi|229117323|ref|ZP_04246701.1| Ribonuclease [Bacillus cereus Rock1-3]
 gi|228666223|gb|EEL21687.1| Ribonuclease [Bacillus cereus Rock1-3]
 gi|228685204|gb|EEL39135.1| Ribonuclease [Bacillus cereus Rock3-29]
          Length = 257

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 95/195 (48%), Positives = 131/195 (67%), Gaps = 5/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYE 73
           E  +REK +  +AGIDEVGRG LAGPVV AA++L D   IP G++DSKK+S  KRE  Y+
Sbjct: 63  ENALREKGITYIAGIDEVGRGPLAGPVVTAAVVLPDDFYIP-GLDDSKKLSEAKRERFYD 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I + AI I +   S Q ID+ NI++AT  A+  AV NL   P+  LID   +P  +P  
Sbjct: 122 EIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPTSIP-- 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF  H+GY T +H + I+  G
Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPAYGFGQHMGYGTKQHLEAIEAHG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 240 VLEEHRKSFAPIKDM 254


>gi|116051639|ref|YP_789522.1| ribonuclease HII [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296387853|ref|ZP_06877328.1| ribonuclease HII [Pseudomonas aeruginosa PAb1]
 gi|313109047|ref|ZP_07795019.1| ribonuclease HII [Pseudomonas aeruginosa 39016]
 gi|122260782|sp|Q02RB4|RNH2_PSEAB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|115586860|gb|ABJ12875.1| ribonuclease HII [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310881521|gb|EFQ40115.1| ribonuclease HII [Pseudomonas aeruginosa 39016]
          Length = 201

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 94/183 (51%), Positives = 120/183 (65%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L GPVV AA+ILDP+    G+NDSKK+S  +RE L+E+I   A+   I+
Sbjct: 14  VAGVDEVGRGPLCGPVVTAAVILDPSRPILGLNDSKKLSEARREALFEEIREKALAWCIA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AVE L V PR ALIDG   P+ L   +  V+KGDS   
Sbjct: 74  RAEVEEIDRLNILHATMLAMQRAVEGLSVTPRLALIDGNRCPK-LAVPSAPVVKGDSQVP 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKV+RDR M    + YP YG   H GYPTA H + +   GP+ IHR +F P+
Sbjct: 133 AIAAASILAKVSRDREMVELDRVYPGYGMAGHKGYPTAVHLEALSRLGPTPIHRRSFAPV 192

Query: 205 RNL 207
           R L
Sbjct: 193 REL 195


>gi|309804177|ref|ZP_07698255.1| ribonuclease HII [Lactobacillus iners LactinV 11V1-d]
 gi|308163760|gb|EFO66029.1| ribonuclease HII [Lactobacillus iners LactinV 11V1-d]
          Length = 250

 Score =  171 bits (433), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 97/203 (47%), Positives = 128/203 (63%), Gaps = 8/203 (3%)

Query: 8   ERPHFELEAMVR-EKNMW----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62
           E+   E E     EK  W     VAG+DEVGRG LAGPVV AA+ILD N     +NDSKK
Sbjct: 46  EKAFLEFETRFSYEKKFWCQNKLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKK 105

Query: 63  ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           ++ KKR EL+  I   A+ +S+  A++  IDK NI++A   A+  AV+ L+V P + L+D
Sbjct: 106 LTPKKRNELFPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVD 165

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
              +P DLP     +I+GDS S SIAAASI+AKV RDRLM    + YP+Y F  + GY T
Sbjct: 166 AMDVPVDLP--QLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGT 223

Query: 182 AKHQQVIKEKGPSCIHRLTFRPL 204
           AKH   +K+ GP+ IHR +F P+
Sbjct: 224 AKHLSALKQYGPTPIHRFSFEPV 246


>gi|296504332|ref|YP_003666032.1| ribonuclease HII [Bacillus thuringiensis BMB171]
 gi|296325384|gb|ADH08312.1| ribonuclease HII [Bacillus thuringiensis BMB171]
          Length = 257

 Score =  171 bits (433), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 95/200 (47%), Positives = 132/200 (66%), Gaps = 6/200 (3%)

Query: 12  FEL---EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           FE+   E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KR
Sbjct: 57  FEMSKYENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKR 116

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E  Y++I   AI I +   S Q ID  NI++AT  A+  AV NL   P+  LID   +P 
Sbjct: 117 ERFYDEIKVQAIAIGVGIVSPQIIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT 176

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +P  +  +IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP+YGF+ H+GY T +H + 
Sbjct: 177 PIPQTS--IIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEA 234

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           I+  G    HR +F P++++
Sbjct: 235 IEVHGVLDEHRNSFAPIKDM 254


>gi|75676782|ref|YP_319203.1| ribonuclease HII/HIII [Nitrobacter winogradskyi Nb-255]
 gi|97189098|sp|Q3SPE0|RNH2_NITWN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|74421652|gb|ABA05851.1| RNase HII [Nitrobacter winogradskyi Nb-255]
          Length = 258

 Score =  171 bits (433), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 94/195 (48%), Positives = 127/195 (65%), Gaps = 1/195 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E  + E  +WPVAG DEVGRG LAGPVV AA++LDPN+IP GI+DSK+++  +RE
Sbjct: 34  PSFMRERDLMECGVWPVAGCDEVGRGPLAGPVVAAAVVLDPNHIPKGIDDSKRLTAARRE 93

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           EL+E+I ++A  +++ A  + ID+ NI +A+L A+  AV  L   P+   +DGR    D+
Sbjct: 94  ELFEEIVATASFAVACAPIERIDRDNILRASLWALARAVHALPDTPKHVFVDGRDR-IDI 152

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C    VI GD + LSIAAASI+AKVTRDRLM    +  P YGF++H GY    H + + 
Sbjct: 153 ACACEPVIGGDGLVLSIAAASIVAKVTRDRLMCKLARDCPGYGFETHKGYAVPGHLEALG 212

Query: 190 EKGPSCIHRLTFRPL 204
             GPS  HR  F P+
Sbjct: 213 RLGPSSHHRSFFAPV 227


>gi|325912821|ref|ZP_08175199.1| ribonuclease HII [Lactobacillus iners UPII 60-B]
 gi|325477814|gb|EGC80948.1| ribonuclease HII [Lactobacillus iners UPII 60-B]
          Length = 250

 Score =  171 bits (433), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 97/203 (47%), Positives = 128/203 (63%), Gaps = 8/203 (3%)

Query: 8   ERPHFELEAMVR-EKNMW----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62
           E+   E E     EK  W     VAG+DEVGRG LAGPVV AA+ILD N     +NDSKK
Sbjct: 46  EKAFLEFETRFSYEKEFWCQNKLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKK 105

Query: 63  ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           ++ KKR EL+  I   A+ +S+  A++  IDK NI++A   A+  AV+ L+V P + L+D
Sbjct: 106 LTPKKRNELFPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVD 165

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
              +P DLP     +I+GDS S SIAAASI+AKV RDRLM    + YP+Y F  + GY T
Sbjct: 166 AMDVPVDLP--QLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGT 223

Query: 182 AKHQQVIKEKGPSCIHRLTFRPL 204
           AKH   +K+ GP+ IHR +F P+
Sbjct: 224 AKHLSALKQYGPTPIHRFSFEPV 246


>gi|329921301|ref|ZP_08277739.1| ribonuclease HII [Lactobacillus iners SPIN 1401G]
 gi|328934593|gb|EGG31097.1| ribonuclease HII [Lactobacillus iners SPIN 1401G]
          Length = 250

 Score =  171 bits (433), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 97/203 (47%), Positives = 128/203 (63%), Gaps = 8/203 (3%)

Query: 8   ERPHFELEAMVR-EKNMW----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62
           E+   E E     EK  W     VAG+DEVGRG LAGPVV AA+ILD N     +NDSKK
Sbjct: 46  EKAFLEFETRFSYEKEFWCQNKLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKK 105

Query: 63  ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           ++ KKR EL+  I   A+ +S+  A++  IDK NI++A   A+  AV+ L+V P + L+D
Sbjct: 106 LTPKKRNELFPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVD 165

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
              +P DLP     +I+GDS S SIAAASI+AKV RDRLM    + YP+Y F  + GY T
Sbjct: 166 AMDVPVDLP--QLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGT 223

Query: 182 AKHQQVIKEKGPSCIHRLTFRPL 204
           AKH   +K+ GP+ IHR +F P+
Sbjct: 224 AKHLSALKQYGPTPIHRFSFEPV 246


>gi|229071335|ref|ZP_04204558.1| Ribonuclease [Bacillus cereus F65185]
 gi|229180113|ref|ZP_04307457.1| Ribonuclease [Bacillus cereus 172560W]
 gi|228603322|gb|EEK60799.1| Ribonuclease [Bacillus cereus 172560W]
 gi|228711789|gb|EEL63741.1| Ribonuclease [Bacillus cereus F65185]
          Length = 254

 Score =  171 bits (433), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 95/200 (47%), Positives = 131/200 (65%), Gaps = 6/200 (3%)

Query: 12  FEL---EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           FE+   E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KR
Sbjct: 54  FEMSKYENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKR 113

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E  Y++I   AI I +   S Q ID  NI++AT  A+  AV NL   P+  LID   +P 
Sbjct: 114 ERFYDEIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT 173

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +P  +  +IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + 
Sbjct: 174 PIPQTS--IIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPQYGFEQHMGYGTKQHLEA 231

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           I+  G    HR +F P++++
Sbjct: 232 IQVHGVLDEHRKSFAPIKDM 251


>gi|229061440|ref|ZP_04198785.1| Ribonuclease [Bacillus cereus AH603]
 gi|228717863|gb|EEL69511.1| Ribonuclease [Bacillus cereus AH603]
          Length = 257

 Score =  171 bits (433), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 96/205 (46%), Positives = 131/205 (63%), Gaps = 7/205 (3%)

Query: 8   ERPHF----ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           ER  F    + E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+
Sbjct: 52  ERGKFLEMSKYENELREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKL 111

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           S  KRE  Y++I   AI I +   S Q ID+ NI++AT  A+  AV NL   P   LID 
Sbjct: 112 SEAKRERFYDEIKEHAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPEYLLIDA 171

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
             +P  +P    ++IKGD+ S+SI+AASIIAKVTRDR+M+    KYP YGF+ H+GY T 
Sbjct: 172 MKLPTSIP--QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGGKYPAYGFEQHMGYGTK 229

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207
           +H + I+  G    HR +F P++++
Sbjct: 230 QHLEAIEVHGVLEEHRKSFAPIKDM 254


>gi|228954113|ref|ZP_04116142.1| Ribonuclease [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|229081092|ref|ZP_04213602.1| Ribonuclease [Bacillus cereus Rock4-2]
 gi|228702136|gb|EEL54612.1| Ribonuclease [Bacillus cereus Rock4-2]
 gi|228805679|gb|EEM52269.1| Ribonuclease [Bacillus thuringiensis serovar kurstaki str. T03a001]
          Length = 257

 Score =  171 bits (433), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 95/200 (47%), Positives = 131/200 (65%), Gaps = 6/200 (3%)

Query: 12  FEL---EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           FE+   E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KR
Sbjct: 57  FEMSKYENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKR 116

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E  Y++I   AI I +   S Q ID  NI++AT  A+  AV NL   P+  LID   +P 
Sbjct: 117 ERFYDEIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT 176

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +P    ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + 
Sbjct: 177 PIP--QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPQYGFEQHMGYGTKQHLEA 234

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           I+  G    HR +F P++++
Sbjct: 235 IQVHGVLDEHRKSFAPIKDM 254


>gi|312871434|ref|ZP_07731529.1| ribonuclease HII [Lactobacillus iners LEAF 3008A-a]
 gi|312872310|ref|ZP_07732380.1| ribonuclease HII [Lactobacillus iners LEAF 2062A-h1]
 gi|311092133|gb|EFQ50507.1| ribonuclease HII [Lactobacillus iners LEAF 2062A-h1]
 gi|311093087|gb|EFQ51436.1| ribonuclease HII [Lactobacillus iners LEAF 3008A-a]
          Length = 250

 Score =  171 bits (433), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 97/203 (47%), Positives = 128/203 (63%), Gaps = 8/203 (3%)

Query: 8   ERPHFELEAMVR-EKNMW----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62
           E+   E E     EK  W     VAG+DEVGRG LAGPVV AA+ILD N     +NDSKK
Sbjct: 46  EKAFLEFETRFSYEKEFWCQKKLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKK 105

Query: 63  ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           ++ KKR EL+  I   A+ +S+  A++  IDK NI++A   A+  AV+ L+V P + L+D
Sbjct: 106 LTPKKRNELFPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVD 165

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
              +P DLP     +I+GDS S SIAAASI+AKV RDRLM    + YP+Y F  + GY T
Sbjct: 166 AMDVPVDLP--QLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGT 223

Query: 182 AKHQQVIKEKGPSCIHRLTFRPL 204
           AKH   +K+ GP+ IHR +F P+
Sbjct: 224 AKHLSALKQYGPTPIHRFSFEPV 246


>gi|309809305|ref|ZP_07703174.1| ribonuclease HII [Lactobacillus iners SPIN 2503V10-D]
 gi|325911988|ref|ZP_08174390.1| ribonuclease HII [Lactobacillus iners UPII 143-D]
 gi|308170418|gb|EFO72442.1| ribonuclease HII [Lactobacillus iners SPIN 2503V10-D]
 gi|325476173|gb|EGC79337.1| ribonuclease HII [Lactobacillus iners UPII 143-D]
          Length = 250

 Score =  171 bits (433), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 97/203 (47%), Positives = 128/203 (63%), Gaps = 8/203 (3%)

Query: 8   ERPHFELEAMVR-EKNMW----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62
           E+   E E     EK  W     VAG+DEVGRG LAGPVV AA+ILD N     +NDSKK
Sbjct: 46  EKAFLEFETRFSYEKEFWCQNKLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKK 105

Query: 63  ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           ++ KKR EL+  I   A+ +S+  A++  IDK NI++A   A+  AV+ L+V P + L+D
Sbjct: 106 LTPKKRNELFPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVD 165

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
              +P DLP     +I+GDS S SIAAASI+AKV RDRLM    + YP+Y F  + GY T
Sbjct: 166 AMDVPVDLP--QLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGT 223

Query: 182 AKHQQVIKEKGPSCIHRLTFRPL 204
           AKH   +K+ GP+ IHR +F P+
Sbjct: 224 AKHLSALKQYGPTPIHRFSFEPV 246


>gi|30021925|ref|NP_833556.1| ribonuclease HII [Bacillus cereus ATCC 14579]
 gi|39932341|sp|Q819W9|RNH2_BACCR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|29897481|gb|AAP10757.1| Ribonuclease HII [Bacillus cereus ATCC 14579]
          Length = 257

 Score =  171 bits (433), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 95/200 (47%), Positives = 131/200 (65%), Gaps = 6/200 (3%)

Query: 12  FEL---EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           FE+   E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KR
Sbjct: 57  FEMSKYENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKR 116

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E  Y++I   AI I +   S Q ID  NI++AT  A+  AV NL   P+  LID   +P 
Sbjct: 117 ERFYDEIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT 176

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +P  +  +IKGD+ S+SI+AASIIAKVTRDR+M+    KYP+YGF+ H+GY T +H + 
Sbjct: 177 PIPQTS--IIKGDAKSVSISAASIIAKVTRDRMMKELGGKYPEYGFEQHMGYGTKQHLEA 234

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           I+  G    HR +F P++++
Sbjct: 235 IEVHGVLDEHRKSFAPIKDM 254


>gi|328957389|ref|YP_004374775.1| ribonuclease HII [Carnobacterium sp. 17-4]
 gi|328673713|gb|AEB29759.1| ribonuclease HII [Carnobacterium sp. 17-4]
          Length = 257

 Score =  171 bits (432), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 99/201 (49%), Positives = 127/201 (63%), Gaps = 3/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           ++   ++E    E+    VAGIDEVGRG LAGPVV AA+IL  +     INDSK++S  K
Sbjct: 57  QQEMLQIEQFFWEQGTQFVAGIDEVGRGPLAGPVVAAAVILPQDFNVLEINDSKQLSSAK 116

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           RE L+++I  SA+ I I    HQ IDK NI++AT  A+  AVE L   P   LID   +P
Sbjct: 117 REVLFDQIQESALAIGIGIKDHQVIDKVNIYQATKLAMIEAVEQLPQQPEQLLIDAMHLP 176

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             +P ++F  IKGDS SLSIAAASIIAKVTRDR+M      YP YGF  + GY T  H +
Sbjct: 177 ITIPQESF--IKGDSKSLSIAAASIIAKVTRDRMMAEYDTLYPGYGFSKNAGYGTKIHLE 234

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            +++ G   IHR TF P++NL
Sbjct: 235 GLEKHGICPIHRKTFAPVKNL 255


>gi|152983475|ref|YP_001346881.1| ribonuclease HII [Pseudomonas aeruginosa PA7]
 gi|166226639|sp|A6V1E6|RNH2_PSEA7 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|150958633|gb|ABR80658.1| ribonuclease HII [Pseudomonas aeruginosa PA7]
          Length = 201

 Score =  171 bits (432), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 93/183 (50%), Positives = 119/183 (65%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L GPVV AA+ILDP+    G+NDSKK+S  +RE L+E+I   A+   ++
Sbjct: 14  VAGVDEVGRGPLCGPVVTAAVILDPSRPILGLNDSKKLSEARREALFEEIREKALAWCVA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AVE L V PR ALIDG   P  L   +  V+KGDS   
Sbjct: 74  RAEVEEIDRLNILHATMLAMQRAVEGLSVTPRLALIDGNRCPR-LAVPSAPVVKGDSQVP 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKV+RDR M    + YP YG   H GYPTA H + +   GP+ IHR +F P+
Sbjct: 133 AIAAASILAKVSRDREMVELDRLYPGYGMAGHKGYPTAVHLEALSRLGPTPIHRRSFAPV 192

Query: 205 RNL 207
           R L
Sbjct: 193 REL 195


>gi|259500645|ref|ZP_05743547.1| ribonuclease HII [Lactobacillus iners DSM 13335]
 gi|302191334|ref|ZP_07267588.1| ribonuclease HII [Lactobacillus iners AB-1]
 gi|259168029|gb|EEW52524.1| ribonuclease HII [Lactobacillus iners DSM 13335]
          Length = 250

 Score =  171 bits (432), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 97/203 (47%), Positives = 128/203 (63%), Gaps = 8/203 (3%)

Query: 8   ERPHFELEAMVR-EKNMW----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62
           E+   E E     EK  W     VAG+DEVGRG LAGPVV AA+ILD N     +NDSKK
Sbjct: 46  EKAFLEFETRFSYEKEFWCQKKLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKK 105

Query: 63  ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           ++ KKR EL+  I   A+ +S+  A++  IDK NI++A   A+  AV+ L+V P + L+D
Sbjct: 106 LTPKKRNELFPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVD 165

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
              +P DLP     +I+GDS S SIAAASI+AKV RDRLM    + YP+Y F  + GY T
Sbjct: 166 AMDVPIDLP--QLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGT 223

Query: 182 AKHQQVIKEKGPSCIHRLTFRPL 204
           AKH   +K+ GP+ IHR +F P+
Sbjct: 224 AKHLSALKQYGPTPIHRFSFEPV 246


>gi|149912480|ref|ZP_01901014.1| Ribonuclease H [Roseobacter sp. AzwK-3b]
 gi|149812886|gb|EDM72712.1| Ribonuclease H [Roseobacter sp. AzwK-3b]
          Length = 211

 Score =  171 bits (432), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 91/198 (45%), Positives = 127/198 (64%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F LE          VAG+DEVGRG LAGPV  AA++LD   IP G+NDSK+++ K+R 
Sbjct: 5   PDFTLETAAHAAGHLRVAGVDEVGRGPLAGPVTAAAVVLDILRIPEGLNDSKRLTAKRRA 64

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L++ I   A +SI+ AS + IDK NI +A+  A+  A+  L   P  ALIDG  IP  L
Sbjct: 65  VLHDAILGMAEVSIAHASVEEIDKLNILRASHLAMERAIAGLATPPDMALIDGNLIPRGL 124

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              A AV+KGD  SLSIAAASI+AK+TRDR+M    +++P YG++++ GYP+  H   ++
Sbjct: 125 QIPAQAVVKGDGKSLSIAAASIVAKITRDRIMWDLAQQFPGYGWETNAGYPSKSHIAALQ 184

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G +  HR +F+P+ N+
Sbjct: 185 NIGLTPHHRRSFKPVHNI 202


>gi|83941807|ref|ZP_00954269.1| ribonuclease HII [Sulfitobacter sp. EE-36]
 gi|83847627|gb|EAP85502.1| ribonuclease HII [Sulfitobacter sp. EE-36]
          Length = 238

 Score =  171 bits (432), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 87/199 (43%), Positives = 131/199 (65%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +P FE E     +    VAG+DEVGRG LAGPV  AA++LDP+ IP G+NDSKK++   R
Sbjct: 35  KPDFEFERAAHARGFERVAGVDEVGRGPLAGPVTAAAVVLDPDRIPEGLNDSKKLTKTAR 94

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           E LYE++   A +S++ AS + I++ NI +A+  A+  A+E L+     ALIDG  IP D
Sbjct: 95  ERLYEELLQVADVSVAHASVEEIEELNILRASHLAMLRALEGLKTPADYALIDGNMIPRD 154

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L   A  V+KGD+ S SI+AASI AK+ RD +M    +++P YG+++++GY + KH + +
Sbjct: 155 LTLPAETVVKGDARSQSISAASIAAKICRDCVMLSLAQQHPGYGWETNMGYGSKKHMEAL 214

Query: 189 KEKGPSCIHRLTFRPLRNL 207
           ++ G +  HR  F+P+ N+
Sbjct: 215 QKIGVTPHHRRLFKPVHNM 233


>gi|229129113|ref|ZP_04258086.1| Ribonuclease [Bacillus cereus BDRD-Cer4]
 gi|228654350|gb|EEL10215.1| Ribonuclease [Bacillus cereus BDRD-Cer4]
          Length = 254

 Score =  171 bits (432), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 95/200 (47%), Positives = 131/200 (65%), Gaps = 6/200 (3%)

Query: 12  FEL---EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           FE+   E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KR
Sbjct: 54  FEMSKYENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKR 113

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E  Y++I   AI I +   S Q ID  NI++AT  A+  AV NL   P+  LID   +P 
Sbjct: 114 ERFYDEIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT 173

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +P  +  +IKGD+ S+SI+AASIIAKVTRDR+M+    KYP+YGF+ H+GY T +H + 
Sbjct: 174 PIPQTS--IIKGDAKSVSISAASIIAKVTRDRMMKELGGKYPEYGFEQHMGYGTKQHLEA 231

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           I+  G    HR +F P++++
Sbjct: 232 IEVHGVLDEHRKSFAPIKDM 251


>gi|312898597|ref|ZP_07757987.1| ribonuclease HII [Megasphaera micronuciformis F0359]
 gi|310620516|gb|EFQ04086.1| ribonuclease HII [Megasphaera micronuciformis F0359]
          Length = 266

 Score =  171 bits (432), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 92/201 (45%), Positives = 135/201 (67%), Gaps = 8/201 (3%)

Query: 14  LEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           L+ M+R E+ ++      +AGIDE GRG +AGPV +AA+IL    + +G+NDSKK+SHK+
Sbjct: 59  LKGMLRYEEKLYAKGYRYIAGIDEAGRGPVAGPVTIAAVILPIRPLIYGLNDSKKVSHKR 118

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           REEL++ I + AI +S  + S   ID+++I+ AT  A+Y AV+ L + P++ LID   +P
Sbjct: 119 REELFDTIMNEAIAVSCINFSEADIDRYDIYHATQRAMYTAVKTLDISPQAVLIDAMPLP 178

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            DL     +++ GD+ S SIAAASIIAKVTRDR+M    ++YP YGF  H GY T  H+ 
Sbjct: 179 -DLEIYHESIVGGDAQSQSIAAASIIAKVTRDRIMEEYDRQYPRYGFAEHKGYLTQTHKD 237

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + GP  IHR +F P++++
Sbjct: 238 AIAQYGPCPIHRKSFEPVKSM 258


>gi|229013020|ref|ZP_04170185.1| Ribonuclease [Bacillus mycoides DSM 2048]
 gi|229134645|ref|ZP_04263454.1| Ribonuclease [Bacillus cereus BDRD-ST196]
 gi|229168576|ref|ZP_04296299.1| Ribonuclease [Bacillus cereus AH621]
 gi|228614982|gb|EEK72084.1| Ribonuclease [Bacillus cereus AH621]
 gi|228648691|gb|EEL04717.1| Ribonuclease [Bacillus cereus BDRD-ST196]
 gi|228748274|gb|EEL98134.1| Ribonuclease [Bacillus mycoides DSM 2048]
          Length = 257

 Score =  170 bits (431), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 96/205 (46%), Positives = 131/205 (63%), Gaps = 7/205 (3%)

Query: 8   ERPHF----ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           ER  F    + E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+
Sbjct: 52  EREKFLEMSKYENELREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKL 111

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           S  KRE  Y++I   AI I +   S Q ID+ NI++AT  A+  AV NL   P   LID 
Sbjct: 112 SEAKRERFYDEIKEHAIAIGVGIISPQVIDEINIYQATKQAMLDAVANLSCTPEYLLIDA 171

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
             +P  +P    ++IKGD+ S+SI+AASIIAKVTRDR+M+    KYP YGF+ H+GY T 
Sbjct: 172 MKLPTSIP--QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGGKYPAYGFEQHMGYGTK 229

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207
           +H + I+  G    HR +F P++++
Sbjct: 230 QHLEAIEVHGVLEEHRKSFAPIKDM 254


>gi|241890105|ref|ZP_04777403.1| ribonuclease HII [Gemella haemolysans ATCC 10379]
 gi|241863727|gb|EER68111.1| ribonuclease HII [Gemella haemolysans ATCC 10379]
          Length = 258

 Score =  170 bits (431), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 92/183 (50%), Positives = 123/183 (67%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG LAGPVV AA+IL  +N   G+NDSKK+S KKREELYE+I   A+  +I 
Sbjct: 70  ICGIDEVGRGPLAGPVVAAAVILKKDNYFEGLNDSKKLSEKKREELYEQIRKEAVAYAIC 129

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
              +  I+K+NI+ A   A+  AVE L+V P   LID     E+ P   F+++KGD  S+
Sbjct: 130 EVDNIEIEKYNIYNAARIAMQRAVEKLEVKPDFLLIDAMPF-ENYPIPNFSMVKGDEKSV 188

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAAS+IAKV RD LM+   KKYP Y F+++ GY T KH + +KE G + IHR  F P+
Sbjct: 189 SIAAASVIAKVYRDNLMKEYAKKYPHYDFENNAGYGTKKHLEGLKEHGVTPIHRRDFEPI 248

Query: 205 RNL 207
           +++
Sbjct: 249 KSM 251


>gi|295706298|ref|YP_003599373.1| ribonuclease HII [Bacillus megaterium DSM 319]
 gi|294803957|gb|ADF41023.1| ribonuclease HII [Bacillus megaterium DSM 319]
          Length = 255

 Score =  170 bits (431), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 92/198 (46%), Positives = 128/198 (64%), Gaps = 8/198 (4%)

Query: 15  EAMVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           E M  E  ++      +AG+DEVGRG LAGPVV AA+IL P+    G+ DSKK+S  KRE
Sbjct: 57  EMMAYENELYNQGATYIAGVDEVGRGPLAGPVVAAAVILPPDFFLPGLTDSKKLSEAKRE 116

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           E YE+I  SA+ I I     + ID  NI++AT  A+  A+E L V P   LID   +P  
Sbjct: 117 EFYEEICKSAVAIGIGIIDAEVIDSINIYEATKKAMTEAIELLAVQPDELLIDAMKLP-- 174

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           +P    ++IKGD+ S+SIAA+S+IAKVTRDR+M+   ++YP YGF+ H+GY T +H + I
Sbjct: 175 VPISQQSIIKGDATSISIAASSVIAKVTRDRMMKELGERYPAYGFEKHMGYGTKQHLEAI 234

Query: 189 KEKGPSCIHRLTFRPLRN 206
           ++ G    HR +F P++N
Sbjct: 235 QQYGILPEHRRSFAPIKN 252


>gi|167624881|ref|YP_001675175.1| ribonuclease HII [Shewanella halifaxensis HAW-EB4]
 gi|189043659|sp|B0TP69|RNH2_SHEHH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|167354903|gb|ABZ77516.1| Ribonuclease H [Shewanella halifaxensis HAW-EB4]
          Length = 203

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 92/180 (51%), Positives = 120/180 (66%), Gaps = 2/180 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KKRE L+E+I   A+ +S+ S
Sbjct: 21  AGVDEVGRGPLIGNVVTAAVILDPNNPIEGLNDSKKLSEKKRELLFEQIQQKALSVSVGS 80

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A+   ID+ NI  AT+ A+  AV  L + P S L+DG   P D   ++ A+IKGD +  +
Sbjct: 81  ATPAEIDELNILHATMLAMQRAVAGLNIKPTSVLVDGNRTP-DFGVESHAIIKGDGLIDA 139

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASIIAKV RDR M     +YP+YGFD H GYPT  H + + + G    HR +FRP+R
Sbjct: 140 ISAASIIAKVVRDREMDALALQYPEYGFDKHKGYPTKAHFEALTQHGVLPEHRKSFRPVR 199


>gi|163941575|ref|YP_001646459.1| ribonuclease HII [Bacillus weihenstephanensis KBAB4]
 gi|229564282|sp|A9VT75|RNH2_BACWK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|163863772|gb|ABY44831.1| Ribonuclease H [Bacillus weihenstephanensis KBAB4]
          Length = 257

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 96/205 (46%), Positives = 131/205 (63%), Gaps = 7/205 (3%)

Query: 8   ERPHF----ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           ER  F    + E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+
Sbjct: 52  EREKFLEMSKYENELREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKL 111

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           S  KRE  Y++I   AI I +   S Q ID+ NI++AT  A+  AV NL   P   LID 
Sbjct: 112 SEAKRERFYDEIKDHAIAIGVGIISPQVIDEINIYQATKQAMLDAVANLSCTPEYLLIDA 171

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
             +P  +P    ++IKGD+ S+SI+AASIIAKVTRDR+M+    KYP YGF+ H+GY T 
Sbjct: 172 MKLPTSIP--QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGGKYPAYGFEQHMGYGTK 229

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207
           +H + I+  G    HR +F P++++
Sbjct: 230 QHLEAIEVHGVLEEHRKSFAPIKDM 254


>gi|257878020|ref|ZP_05657673.1| ribonuclease HII [Enterococcus faecium 1,230,933]
 gi|257881194|ref|ZP_05660847.1| ribonuclease HII [Enterococcus faecium 1,231,502]
 gi|257889781|ref|ZP_05669434.1| ribonuclease HII [Enterococcus faecium 1,231,410]
 gi|257892282|ref|ZP_05671935.1| ribonuclease HII [Enterococcus faecium 1,231,408]
 gi|258616491|ref|ZP_05714261.1| ribonuclease HII [Enterococcus faecium DO]
 gi|260559070|ref|ZP_05831256.1| ribonuclease HII [Enterococcus faecium C68]
 gi|261207604|ref|ZP_05922289.1| ribonuclease HII [Enterococcus faecium TC 6]
 gi|289565116|ref|ZP_06445569.1| ribonuclease HII [Enterococcus faecium D344SRF]
 gi|293556764|ref|ZP_06675327.1| ribonuclease HII [Enterococcus faecium E1039]
 gi|293563422|ref|ZP_06677871.1| ribonuclease HII [Enterococcus faecium E1162]
 gi|293568165|ref|ZP_06679501.1| ribonuclease HII (RNase HII) [Enterococcus faecium E1071]
 gi|294614822|ref|ZP_06694717.1| ribonuclease HII [Enterococcus faecium E1636]
 gi|294617501|ref|ZP_06697132.1| ribonuclease HII [Enterococcus faecium E1679]
 gi|294622303|ref|ZP_06701346.1| ribonuclease HII [Enterococcus faecium U0317]
 gi|314938032|ref|ZP_07845342.1| ribonuclease HII [Enterococcus faecium TX0133a04]
 gi|314941982|ref|ZP_07848843.1| ribonuclease HII [Enterococcus faecium TX0133C]
 gi|314948765|ref|ZP_07852137.1| ribonuclease HII [Enterococcus faecium TX0082]
 gi|314951783|ref|ZP_07854822.1| ribonuclease HII [Enterococcus faecium TX0133A]
 gi|314991810|ref|ZP_07857268.1| ribonuclease HII [Enterococcus faecium TX0133B]
 gi|314995851|ref|ZP_07860938.1| ribonuclease HII [Enterococcus faecium TX0133a01]
 gi|257812248|gb|EEV41006.1| ribonuclease HII [Enterococcus faecium 1,230,933]
 gi|257816852|gb|EEV44180.1| ribonuclease HII [Enterococcus faecium 1,231,502]
 gi|257826141|gb|EEV52767.1| ribonuclease HII [Enterococcus faecium 1,231,410]
 gi|257828661|gb|EEV55268.1| ribonuclease HII [Enterococcus faecium 1,231,408]
 gi|260074827|gb|EEW63143.1| ribonuclease HII [Enterococcus faecium C68]
 gi|260077987|gb|EEW65693.1| ribonuclease HII [Enterococcus faecium TC 6]
 gi|289163123|gb|EFD10970.1| ribonuclease HII [Enterococcus faecium D344SRF]
 gi|291589155|gb|EFF20967.1| ribonuclease HII (RNase HII) [Enterococcus faecium E1071]
 gi|291592284|gb|EFF23898.1| ribonuclease HII [Enterococcus faecium E1636]
 gi|291596241|gb|EFF27503.1| ribonuclease HII [Enterococcus faecium E1679]
 gi|291598195|gb|EFF29293.1| ribonuclease HII [Enterococcus faecium U0317]
 gi|291601096|gb|EFF31385.1| ribonuclease HII [Enterococcus faecium E1039]
 gi|291604683|gb|EFF34168.1| ribonuclease HII [Enterococcus faecium E1162]
 gi|313589955|gb|EFR68800.1| ribonuclease HII [Enterococcus faecium TX0133a01]
 gi|313593621|gb|EFR72466.1| ribonuclease HII [Enterococcus faecium TX0133B]
 gi|313596062|gb|EFR74907.1| ribonuclease HII [Enterococcus faecium TX0133A]
 gi|313599234|gb|EFR78079.1| ribonuclease HII [Enterococcus faecium TX0133C]
 gi|313642607|gb|EFS07187.1| ribonuclease HII [Enterococcus faecium TX0133a04]
 gi|313644831|gb|EFS09411.1| ribonuclease HII [Enterococcus faecium TX0082]
          Length = 255

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 96/207 (46%), Positives = 131/207 (63%), Gaps = 13/207 (6%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           MFC        FE +    + + W +AGIDEVGRG LAGPVV AA+IL  N I  G+NDS
Sbjct: 58  MFC--------FEKQGYA-QGHQW-IAGIDEVGRGPLAGPVVAAAVILPKNEIILGLNDS 107

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           K++S KKRE LY+++   A+ I I     Q ID  NI++A+  A+  AVE L ++P   L
Sbjct: 108 KQLSEKKRELLYQQVQEKALAIGIGIVDQQTIDDVNIYEASKLAMIQAVEKLSIVPSYLL 167

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           ID  ++  DLP Q   +IKGD+ S+SIAAASIIAKV RD+LM+     YP YGF  + GY
Sbjct: 168 IDAMTL--DLPIQQEKIIKGDARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGY 225

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRN 206
            T +H + ++ +G + IHR +F P++ 
Sbjct: 226 GTKEHLEGLERQGITPIHRKSFAPVKK 252


>gi|254476664|ref|ZP_05090050.1| ribonuclease HII [Ruegeria sp. R11]
 gi|214030907|gb|EEB71742.1| ribonuclease HII [Ruegeria sp. R11]
          Length = 205

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 94/200 (47%), Positives = 130/200 (65%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E P + LEA    +    +AG+DEVGRG LAGPV  AA+ILDP+ IP G+NDSKK+S KK
Sbjct: 2   EHPDYSLEAAAIARGHRRIAGVDEVGRGPLAGPVTAAAVILDPDAIPDGLNDSKKLSAKK 61

Query: 68  REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           RE +   I  SA +SI+ AS + ID  NI +A+  A+  AV  L   P   LIDG  IP+
Sbjct: 62  REAVEADIFQSAEVSIAHASVEEIDSLNILRASHLAMERAVAALDPPPDYLLIDGNLIPK 121

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +   A  VIKGD  S+SIAAASI+AK+ RDR+M    +++P YG+D + GYP+ +H++ 
Sbjct: 122 GVQQPAEFVIKGDGKSVSIAAASIVAKLARDRIMVDLAQQFPGYGWDKNAGYPSKQHREA 181

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           + E G +  HR +F+P+  +
Sbjct: 182 LIEIGVTPHHRRSFKPVHKI 201


>gi|309805705|ref|ZP_07699745.1| ribonuclease HII [Lactobacillus iners LactinV 09V1-c]
 gi|309806745|ref|ZP_07700739.1| ribonuclease HII [Lactobacillus iners LactinV 03V1-b]
 gi|312873998|ref|ZP_07734034.1| ribonuclease HII [Lactobacillus iners LEAF 2052A-d]
 gi|312875510|ref|ZP_07735513.1| ribonuclease HII [Lactobacillus iners LEAF 2053A-b]
 gi|315653520|ref|ZP_07906441.1| ribonuclease HII [Lactobacillus iners ATCC 55195]
 gi|308164958|gb|EFO67201.1| ribonuclease HII [Lactobacillus iners LactinV 09V1-c]
 gi|308166860|gb|EFO69045.1| ribonuclease HII [Lactobacillus iners LactinV 03V1-b]
 gi|311089021|gb|EFQ47462.1| ribonuclease HII [Lactobacillus iners LEAF 2053A-b]
 gi|311090547|gb|EFQ48955.1| ribonuclease HII [Lactobacillus iners LEAF 2052A-d]
 gi|315489211|gb|EFU78852.1| ribonuclease HII [Lactobacillus iners ATCC 55195]
          Length = 250

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 94/190 (49%), Positives = 124/190 (65%), Gaps = 7/190 (3%)

Query: 20  EKNMW----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           EK  W     VAG+DEVGRG LAGPVV AA+ILD N     +NDSKK++ KKR EL+  I
Sbjct: 59  EKEFWCQNKLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKKLTPKKRNELFPMI 118

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
              A+ +S+  A++  IDK NI++A   A+  AV+ L+V P + L+D   +P DLP    
Sbjct: 119 LDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVDAMDVPVDLP--QL 176

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            +I+GDS S SIAAASI+AKV RDRLM    + YP+Y F  + GY TAKH   +K+ GP+
Sbjct: 177 KLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGTAKHLSALKQYGPT 236

Query: 195 CIHRLTFRPL 204
            IHR +F P+
Sbjct: 237 PIHRFSFEPV 246


>gi|83855284|ref|ZP_00948814.1| ribonuclease HII [Sulfitobacter sp. NAS-14.1]
 gi|83843127|gb|EAP82294.1| ribonuclease HII [Sulfitobacter sp. NAS-14.1]
          Length = 205

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/199 (44%), Positives = 131/199 (65%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +P FE E     +    VAG+DEVGRG LAGPV  AA++LDP+ IP G+NDSKK++   R
Sbjct: 2   KPDFEFERAAHARGFERVAGVDEVGRGPLAGPVTAAAVVLDPDRIPEGLNDSKKLTKPAR 61

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           E LYE++   A +S++ AS + I++ NI +A+  A+  A+E L+     ALIDG  IP D
Sbjct: 62  ERLYEELLQVADVSVAHASVEEIEELNILRASHLAMLRALEGLKTPADYALIDGNVIPRD 121

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L   A  VIKGD+ S SI+AASI AK+ RD +M    +++P YG+++++GY + KH + +
Sbjct: 122 LTLPAEPVIKGDARSQSISAASIAAKICRDCVMLSLAQQHPGYGWETNMGYGSKKHMEAL 181

Query: 189 KEKGPSCIHRLTFRPLRNL 207
           ++ G +  HR  F+P+ N+
Sbjct: 182 QKIGVTPHHRRLFKPVHNM 200


>gi|229192006|ref|ZP_04318976.1| Ribonuclease [Bacillus cereus ATCC 10876]
 gi|228591557|gb|EEK49406.1| Ribonuclease [Bacillus cereus ATCC 10876]
          Length = 254

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 94/200 (47%), Positives = 131/200 (65%), Gaps = 6/200 (3%)

Query: 12  FEL---EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           FE+   E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KR
Sbjct: 54  FEMSKYENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKR 113

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E  Y++I   AI I +   S + ID  NI++AT  A+  AV NL   P+  LID   +P 
Sbjct: 114 ERFYDEIKVQAIAIGVGIVSPEVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT 173

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +P  +  +IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + 
Sbjct: 174 PIPQTS--IIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPQYGFEQHMGYGTKQHLEA 231

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           I+  G    HR +F P++++
Sbjct: 232 IQVHGVLDEHRKSFAPIKDM 251


>gi|239831265|ref|ZP_04679594.1| Ribonuclease HII [Ochrobactrum intermedium LMG 3301]
 gi|239823532|gb|EEQ95100.1| Ribonuclease HII [Ochrobactrum intermedium LMG 3301]
          Length = 281

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/203 (47%), Positives = 133/203 (65%), Gaps = 2/203 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           IP  P F  E  +  + +  + GIDE GRG LAGPVV AA++LD +N+P G++DSK+++ 
Sbjct: 75  IPIAPDFSEEKRLLSRGLKHIVGIDEAGRGPLAGPVVAAAVVLDIDNLPDGLDDSKRLTA 134

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
            +RE LYE I + AI +S++S S + ID  +I KA L+A+  A   L + P  ALIDGR 
Sbjct: 135 ARREALYEIILAKAITVSVASLSARSIDGSDIRKAALEAMRRASIGLTLRPCHALIDGRD 194

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +P  L C   A++KGD  S+SIAAASI+AKVTRDR+M  A   +P YG + H GY T +H
Sbjct: 195 VPPGLACPGSALVKGDQRSISIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATERH 254

Query: 185 QQVIKEKGP-SCIHRLTFRPLRN 206
           +  I+  GP   IHR TF P+++
Sbjct: 255 RAAIETAGPVPGIHRYTFAPIKD 277


>gi|254462688|ref|ZP_05076104.1| ribonuclease HII [Rhodobacterales bacterium HTCC2083]
 gi|206679277|gb|EDZ43764.1| ribonuclease HII [Rhodobacteraceae bacterium HTCC2083]
          Length = 208

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/198 (44%), Positives = 131/198 (66%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P +  E   + + +  VAG+DEVGRG LAGPV  AA+ILDP  IP G+NDSKK+S KKR+
Sbjct: 6   PDYSFEQRAQARGLSIVAGVDEVGRGPLAGPVTAAAVILDPMRIPQGLNDSKKLSAKKRQ 65

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L++ +   A +SI+ AS + ID+ NI +A+  A+  AV  L+  P   LIDG  IP  L
Sbjct: 66  ALHDDLLLCADVSIAHASVEEIDELNILRASHLAMERAVAGLKQRPNHLLIDGNMIPRGL 125

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              + A++KGDS S+SI+AASI+AK+ RD +M    + YP YG++++ GYP+  H+  ++
Sbjct: 126 AGLSEAIVKGDSRSVSISAASIVAKICRDYVMWDLGQHYPGYGWETNAGYPSKSHKLALE 185

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + G +  HR +F+P+ N+
Sbjct: 186 KLGVTPHHRRSFKPVHNI 203


>gi|95930749|ref|ZP_01313482.1| Ribonuclease H [Desulfuromonas acetoxidans DSM 684]
 gi|95133229|gb|EAT14895.1| Ribonuclease H [Desulfuromonas acetoxidans DSM 684]
          Length = 210

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/207 (45%), Positives = 135/207 (65%), Gaps = 4/207 (1%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           +F + + +  +FE +  +R +    VAGIDE GRG LAGPVV AA+IL  +    G+NDS
Sbjct: 5   LFDDDLIDPTYFERQ--LRRQGTTLVAGIDEAGRGPLAGPVVAAAVILPEHFDLPGLNDS 62

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           KK++ KKRE+L+  I   A+ + +  A  + ID+ NI +AT+ ++  AV  L+V P+  L
Sbjct: 63  KKLTEKKREQLFGPIRQQALAVGVGFAHAEEIDEINILQATVQSMCRAVARLKVTPQHLL 122

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           IDG + P  L      + KGDS SLS+AAAS+IAKV RDR+M++  + YPDYGF+ H GY
Sbjct: 123 IDGIT-PLPLSIDQQTIKKGDSRSLSVAAASVIAKVVRDRMMKVYARHYPDYGFEGHKGY 181

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRN 206
            +A+H+Q+I E GP  +HR TF  +R 
Sbjct: 182 GSARHRQLIAEHGPCPLHRKTFGGVRE 208


>gi|309807515|ref|ZP_07701472.1| ribonuclease HII [Lactobacillus iners LactinV 01V1-a]
 gi|308169242|gb|EFO71303.1| ribonuclease HII [Lactobacillus iners LactinV 01V1-a]
          Length = 250

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/190 (49%), Positives = 124/190 (65%), Gaps = 7/190 (3%)

Query: 20  EKNMW----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           EK  W     VAG+DEVGRG LAGPVV AA+ILD N     +NDSKK++ KKR EL+  I
Sbjct: 59  EKEFWCQNKLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKKLTPKKRNELFPMI 118

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
              A+ +S+  A++  IDK NI++A   A+  AV+ L+V P + L+D   +P DLP    
Sbjct: 119 LDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVDAMDVPIDLP--QL 176

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            +I+GDS S SIAAASI+AKV RDRLM    + YP+Y F  + GY TAKH   +K+ GP+
Sbjct: 177 KLIRGDSKSNSIAAASIVAKVFRDRLMDAYGEIYPEYDFAHNAGYGTAKHLSALKQYGPT 236

Query: 195 CIHRLTFRPL 204
            IHR +F P+
Sbjct: 237 PIHRFSFEPV 246


>gi|313892676|ref|ZP_07826259.1| ribonuclease HII [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442767|gb|EFR61176.1| ribonuclease HII [Veillonella sp. oral taxon 158 str. F0412]
          Length = 265

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 87/197 (44%), Positives = 131/197 (66%), Gaps = 2/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           ++ E M  ++ M+ VAG+DEVGRG +AGPV VAA+IL P  +  G+NDSKK++ +KRE L
Sbjct: 63  YDYEGMFYDQGMYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREVL 122

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I   A+ +S  S   + ID+ NI++AT  A+Y A+  L V   + + D   +P DL 
Sbjct: 123 YDIIMKEAVAVSCISYGPEKIDELNIYEATRQAMYEAIRTLSVPAEAVVADAMKLP-DLT 181

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGDS S +IA ASIIAKVTRDR M+   ++YP YGF  H GY T  H++ +++
Sbjct: 182 IPVESIIKGDSKSANIAVASIIAKVTRDRYMKQLDEEYPGYGFGIHKGYYTELHKEAVEQ 241

Query: 191 KGPSCIHRLTFRPLRNL 207
           +G + +HR +F P++++
Sbjct: 242 QGVTPLHRKSFEPIKSI 258


>gi|218458163|ref|ZP_03498254.1| ribonuclease HII [Rhizobium etli Kim 5]
          Length = 161

 Score =  169 bits (427), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 84/158 (53%), Positives = 112/158 (70%)

Query: 4   NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           ++ P  P F LE   R+   WPVAG DE GRG LAGPVV AA+ILDP  IP G+NDSK++
Sbjct: 1   DTAPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDSKQL 60

Query: 64  SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
           S ++REEL+ +I ++A +SI+S+S   ID+ +I KA+LDA+  A+ +L V     L DG 
Sbjct: 61  SAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAVPASYVLTDGL 120

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM 161
            +P  L C   AV+KGD+ S+SIAAASI+AKVTRDR+M
Sbjct: 121 DVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMM 158


>gi|86136899|ref|ZP_01055477.1| ribonuclease HII [Roseobacter sp. MED193]
 gi|85826223|gb|EAQ46420.1| ribonuclease HII [Roseobacter sp. MED193]
          Length = 226

 Score =  169 bits (427), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 93/200 (46%), Positives = 129/200 (64%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E+P   LE    EK    VAG+DEVGRG LAGPV  AA++LD  ++P G+NDSKK+S KK
Sbjct: 23  EQPDNSLEIAAHEKGYLRVAGVDEVGRGPLAGPVTAAAVVLDMADLPEGLNDSKKLSAKK 82

Query: 68  REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           R  L ++I + A +SI+ AS + ID  NI +A+  A+  AV  L   P   LIDG  IP 
Sbjct: 83  RVVLAKEIFARAQVSIAEASVEEIDSINILRASHLAMERAVAALDPPPDYLLIDGNLIPR 142

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           DL   A AV+KGD  S+SIAAASI+AK  RD LM    +++P YG++ + GYP+ +H++ 
Sbjct: 143 DLTIDAQAVVKGDGKSVSIAAASIVAKEARDNLMVDLAQQFPRYGWEKNAGYPSKQHREA 202

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           + E G +  HR +F+P+  +
Sbjct: 203 LVELGVTPHHRRSFKPVHKI 222


>gi|154251159|ref|YP_001411983.1| ribonuclease H [Parvibaculum lavamentivorans DS-1]
 gi|189043635|sp|A7HQZ3|RNH2_PARL1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|154155109|gb|ABS62326.1| Ribonuclease H [Parvibaculum lavamentivorans DS-1]
          Length = 269

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 116/182 (63%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           V G+DE GRG LAGPVV AA+I+D    P G+NDSKK+   +R +L  ++   A I +  
Sbjct: 63  VCGVDEAGRGPLAGPVVAAAVIIDLTRCPEGLNDSKKLDAARRADLLAELADCAEIGVGI 122

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           AS + ID+ NI  AT+ A+  AV +L   P  ALIDG   P  L C + AVI GD+++ S
Sbjct: 123 ASVEEIDEINILHATMLAMTRAVASLPRAPHIALIDGNRCPPSLACASRAVIGGDALARS 182

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           IAAASI+AKVTRDR+M    + +P YGF+ H+GY T +H   +   GP  IHR +F P+R
Sbjct: 183 IAAASIVAKVTRDRMMAALAETHPGYGFEKHMGYSTPEHFDALSRLGPCAIHRRSFAPVR 242

Query: 206 NL 207
            +
Sbjct: 243 KM 244


>gi|315222958|ref|ZP_07864837.1| ribonuclease HII [Streptococcus anginosus F0211]
 gi|315187908|gb|EFU21644.1| ribonuclease HII [Streptococcus anginosus F0211]
          Length = 260

 Score =  168 bits (426), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 97/201 (48%), Positives = 130/201 (64%), Gaps = 9/201 (4%)

Query: 14  LEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           LE M+R EK ++      +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK
Sbjct: 54  LEQMLRYEKELYATGCQYIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKK 113

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
            EE+Y+++   A+ + I    +Q IDK NI++AT  A+  AV NL++ P+  LID   + 
Sbjct: 114 HEEIYQEVLKQAVAVGIGVKDNQVIDKVNIYEATKLAMLEAVGNLEISPQHLLIDAMQL- 172

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            D+     ++IKGD+ SLSIAAASI+AKVTRDR+M      YP Y F  +VGY T  H  
Sbjct: 173 -DVQVSQTSIIKGDANSLSIAAASIVAKVTRDRMMTDYELTYPGYDFTHNVGYGTQHHLD 231

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            +K KG + IHR TF P++++
Sbjct: 232 GLKRKGITPIHRKTFEPIKSM 252


>gi|304384964|ref|ZP_07367310.1| ribonuclease HII [Pediococcus acidilactici DSM 20284]
 gi|304329158|gb|EFL96378.1| ribonuclease HII [Pediococcus acidilactici DSM 20284]
          Length = 255

 Score =  168 bits (425), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 94/197 (47%), Positives = 125/197 (63%), Gaps = 3/197 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F LE  + +     VAGIDEVGRG LAGPVV AA++LD +     +NDSK++S K R
Sbjct: 55  QKRFSLENELWQSGKQFVAGIDEVGRGCLAGPVVTAAVVLDDHFDLVEVNDSKQLSLKLR 114

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E LY +I S A+ + I   S+Q ID+  I  AT  A+  A+ +L V P   LID   +P 
Sbjct: 115 ESLYAQILSEAVSVGIGVRSNQQIDQMGILNATKAAMNDAISHLNVTPEHLLIDAVQVPT 174

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +P     + KGD+ S+SIAAASI+AKV RD LMR  +K YP YGFD +VGY T +H + 
Sbjct: 175 SIP--KTVMYKGDAKSISIAAASIVAKVYRDHLMRSYNKVYPGYGFDQNVGYGTKQHLEG 232

Query: 188 IKEKGPSCIHRLTFRPL 204
           +KE G + +HRLTF P+
Sbjct: 233 LKELGVTPLHRLTFEPV 249


>gi|163739877|ref|ZP_02147284.1| Ribonuclease H [Phaeobacter gallaeciensis BS107]
 gi|161386911|gb|EDQ11273.1| Ribonuclease H [Phaeobacter gallaeciensis BS107]
          Length = 205

 Score =  168 bits (425), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 91/198 (45%), Positives = 128/198 (64%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P + LEA    +    +AG+DEVGRG LAGPV  AA+ILDP NIP G+NDSKK+S K+RE
Sbjct: 4   PDYTLEAAAHGRGQIRIAGVDEVGRGPLAGPVTAAAVILDPENIPEGLNDSKKLSAKRRE 63

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            +   I + A +SI+ AS + ID  NI +A+  A+  AV  L   P   LIDG  IP+ L
Sbjct: 64  AVEASIFAQAEVSIAHASVEEIDSLNILRASHLAMERAVAALDPAPDYLLIDGNLIPKGL 123

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              A  VIKGD+ S+SIAAASI+AK  RDR+M    +++P YG++ + GYP+ +H++ + 
Sbjct: 124 LQPAEFVIKGDAKSVSIAAASIVAKQARDRIMVDLAQQFPGYGWEKNAGYPSKQHREALV 183

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G +  HR +F+P+  +
Sbjct: 184 SLGVTPHHRRSFKPVHKM 201


>gi|329767413|ref|ZP_08258938.1| hypothetical protein HMPREF0428_00635 [Gemella haemolysans M341]
 gi|328836102|gb|EGF85793.1| hypothetical protein HMPREF0428_00635 [Gemella haemolysans M341]
          Length = 258

 Score =  168 bits (425), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 90/184 (48%), Positives = 128/184 (69%), Gaps = 4/184 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG LAGPVV AA+IL  ++   G+NDSKK+S KKREE+YE+I + A+  +I 
Sbjct: 70  ICGIDEVGRGPLAGPVVAAAVILKKDSYFEGLNDSKKLSAKKREEIYEQIKNEAVAYAIC 129

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-EDLPCQAFAVIKGDSIS 143
              +  I+K+NI+ A   A+  AVE L+V P   LID  ++P E+ P   F+++KGD  S
Sbjct: 130 EVDNIEIEKYNIYNAARIAMQRAVEKLEVKPDFLLID--AMPFENYPIPNFSMVKGDEKS 187

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           +SIAAAS++AKV RD LM+   KKYP+Y F+++ GY T KH + +KE G + IHR  F P
Sbjct: 188 VSIAAASVMAKVYRDNLMKEYAKKYPNYDFENNAGYGTKKHLEGLKEYGVTPIHRRDFEP 247

Query: 204 LRNL 207
           ++++
Sbjct: 248 IKSM 251


>gi|270290222|ref|ZP_06196447.1| ribonuclease HII [Pediococcus acidilactici 7_4]
 gi|270281003|gb|EFA26836.1| ribonuclease HII [Pediococcus acidilactici 7_4]
          Length = 255

 Score =  167 bits (424), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 94/197 (47%), Positives = 125/197 (63%), Gaps = 3/197 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F LE  + +     VAGIDEVGRG LAGPVV AA++LD +     +NDSK++S K R
Sbjct: 55  QKRFSLENELWQSGKQFVAGIDEVGRGCLAGPVVTAAVVLDSHFDLVEVNDSKQLSLKLR 114

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E LY +I S A+ + I   S+Q ID+  I  AT  A+  A+ +L V P   LID   +P 
Sbjct: 115 ESLYAQILSEAVSVGIGVRSNQQIDQMGILNATKAAMNDAISHLNVTPEHLLIDAVQVPT 174

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +P     + KGD+ S+SIAAASI+AKV RD LMR  +K YP YGFD +VGY T +H + 
Sbjct: 175 SIP--KTVMYKGDAKSISIAAASIVAKVYRDHLMRSYNKIYPGYGFDQNVGYGTKQHLEG 232

Query: 188 IKEKGPSCIHRLTFRPL 204
           +KE G + +HRLTF P+
Sbjct: 233 LKELGITPLHRLTFEPV 249


>gi|260574050|ref|ZP_05842055.1| Ribonuclease H [Rhodobacter sp. SW2]
 gi|259023516|gb|EEW26807.1| Ribonuclease H [Rhodobacter sp. SW2]
          Length = 213

 Score =  167 bits (424), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 90/201 (44%), Positives = 124/201 (61%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           P  P F  E     +    VAG+DEVGRG LAGPV  AA+ L P +IP G+NDSKK+S  
Sbjct: 4   PPFPDFSFETAALARGARVVAGVDEVGRGPLAGPVTAAAVRLFPGSIPLGLNDSKKLSAA 63

Query: 67  KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           +RE L+  +   A +SI+ A+   ID+ NI +A+  A+  A+  L      ALIDG  +P
Sbjct: 64  RREALFHALMEQAQVSIAHATVAEIDELNILRASHLAMQRALAGLPEPCDHALIDGNLLP 123

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             L C A A++KGD  SLSIAAASIIAKVTRD +M    +++P YG++++ GYPT  H  
Sbjct: 124 RGLSCAAQAIVKGDGRSLSIAAASIIAKVTRDAIMVDLAQQHPGYGWEANAGYPTKAHLA 183

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            +   G +  HR +F+P+ N+
Sbjct: 184 ALLNLGVTPWHRRSFKPVHNI 204


>gi|294500952|ref|YP_003564652.1| ribonuclease HII [Bacillus megaterium QM B1551]
 gi|294350889|gb|ADE71218.1| ribonuclease HII [Bacillus megaterium QM B1551]
          Length = 255

 Score =  167 bits (424), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 91/198 (45%), Positives = 127/198 (64%), Gaps = 8/198 (4%)

Query: 15  EAMVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           E M  E  ++      +AG+DEVGRG LAGPVV AA+IL P+    G+ DSKK+S  KRE
Sbjct: 57  EMMAYENELYSQGATYIAGVDEVGRGPLAGPVVAAAVILPPDFFLPGLTDSKKLSEAKRE 116

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
             YE+I  SA+ I I     + ID  NI++AT  A+  A+E L V P   LID   +P  
Sbjct: 117 AFYEEICKSAVAIGIGIIGAEVIDSINIYEATKKAMTEAIELLAVQPDELLIDAMKLP-- 174

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           +P    ++IKGD+ S+SIAA+S+IAKVTRDR+M+   ++YP YGF+ H+GY T +H + I
Sbjct: 175 VPISQQSIIKGDATSISIAASSVIAKVTRDRMMKELGERYPAYGFEKHMGYGTKQHLEAI 234

Query: 189 KEKGPSCIHRLTFRPLRN 206
           ++ G    HR +F P++N
Sbjct: 235 EKYGILPEHRRSFAPIKN 252


>gi|293570274|ref|ZP_06681343.1| ribonuclease HII [Enterococcus faecium E980]
 gi|291609681|gb|EFF38942.1| ribonuclease HII [Enterococcus faecium E980]
          Length = 255

 Score =  167 bits (424), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 97/207 (46%), Positives = 131/207 (63%), Gaps = 13/207 (6%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           MFC        FE +    + + W +AGIDEVGRG LAGPVV AA+IL  N I  G+NDS
Sbjct: 58  MFC--------FEKQGYA-QGHQW-IAGIDEVGRGPLAGPVVAAAVILPKNEIILGLNDS 107

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           K++S KKRE L ++I   A+ I I     Q ID+ NI++A+  A+  AVENL + P   L
Sbjct: 108 KQLSEKKRELLSQQIQEKALAIGIGIIDQQAIDEVNIYEASKLAMIQAVENLSIAPSYLL 167

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           ID  ++  DLP Q   +IKGD+ S+SIAAASIIAKV RD+LM+     YP YGF  + GY
Sbjct: 168 IDAMTL--DLPIQQEKIIKGDARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGY 225

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRN 206
            T +H + ++ +G + IHR +F P++ 
Sbjct: 226 GTKEHLEGLERQGITPIHRKSFAPVKK 252


>gi|294675759|ref|YP_003576374.1| ribonuclease HII [Rhodobacter capsulatus SB 1003]
 gi|294474579|gb|ADE83967.1| ribonuclease HII [Rhodobacter capsulatus SB 1003]
          Length = 211

 Score =  167 bits (424), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 88/196 (44%), Positives = 129/196 (65%), Gaps = 2/196 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           FE  A+ R      +AG+DEVGRG L GPV  AA++LD + +P G+NDSKK+S K+R  L
Sbjct: 9   FEQAALAR--GFTRIAGVDEVGRGPLCGPVTAAAVVLDLSCLPEGLNDSKKLSAKRRAAL 66

Query: 72  YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             +IT++A +S++ AS   ID  NI +A+  A+  A+E L+  P   LIDG  +P+ L  
Sbjct: 67  VAQITATADVSVAHASVAEIDALNILQASHLAMIRAIEGLKTPPDHVLIDGNRLPKALTI 126

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
            A A++KGD+ S+SIAAASI+AK  RD LM    ++YP YG++ + GYPT  H Q + + 
Sbjct: 127 SAEAIVKGDARSVSIAAASILAKEIRDALMVDLAQQYPGYGWERNAGYPTRDHLQALLDL 186

Query: 192 GPSCIHRLTFRPLRNL 207
           G + +HR +F+P+ N+
Sbjct: 187 GVTPVHRRSFKPVHNI 202


>gi|257898823|ref|ZP_05678476.1| ribonuclease HII [Enterococcus faecium Com15]
 gi|257836735|gb|EEV61809.1| ribonuclease HII [Enterococcus faecium Com15]
          Length = 255

 Score =  167 bits (424), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 97/207 (46%), Positives = 131/207 (63%), Gaps = 13/207 (6%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           MFC        FE +    + + W +AGIDEVGRG LAGPVV AA+IL  N I  G+NDS
Sbjct: 58  MFC--------FEKQGYA-QGHQW-IAGIDEVGRGPLAGPVVAAAVILPKNEIILGLNDS 107

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           K++S KKRE L ++I   A+ I I     Q ID+ NI++A+  A+  AVENL + P   L
Sbjct: 108 KQLSEKKRELLSQQIQEKALAIGIGIIDQQAIDEVNIYEASKLAMIQAVENLSIAPSYLL 167

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           ID  ++  DLP Q   +IKGD+ S+SIAAASIIAKV RD+LM+     YP YGF  + GY
Sbjct: 168 IDAMTL--DLPIQQEKIIKGDARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGY 225

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRN 206
            T +H + ++ +G + IHR +F P++ 
Sbjct: 226 GTKEHLEGLERQGITPIHRKSFAPVKK 252


>gi|157962690|ref|YP_001502724.1| ribonuclease HII [Shewanella pealeana ATCC 700345]
 gi|189043660|sp|A8H6K2|RNH2_SHEPA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157847690|gb|ABV88189.1| Ribonuclease H [Shewanella pealeana ATCC 700345]
          Length = 203

 Score =  167 bits (423), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 91/180 (50%), Positives = 119/180 (66%), Gaps = 2/180 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KKRE L+E+I   A+ +S+ S
Sbjct: 21  AGVDEVGRGPLIGNVVTAAVILDPNNPIEGLNDSKKLSEKKRELLFEQIQQKALSVSVGS 80

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A+   ID+ NI  AT+ A+  AV  L + P S L+DG   P D   ++ A+IKGD +  +
Sbjct: 81  ATPAEIDELNILHATMLAMQRAVAGLNIKPSSVLVDGNRTP-DFGVESHAIIKGDGLIDA 139

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASIIAKV RDR M      YP+YGF+ H GYPT  H + + + G    HR +FRP+R
Sbjct: 140 ISAASIIAKVVRDREMDALALLYPEYGFEKHKGYPTKAHFEALAQHGVLPEHRKSFRPVR 199


>gi|163743378|ref|ZP_02150758.1| ribonuclease HII [Phaeobacter gallaeciensis 2.10]
 gi|161383372|gb|EDQ07761.1| ribonuclease HII [Phaeobacter gallaeciensis 2.10]
          Length = 205

 Score =  167 bits (423), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 90/198 (45%), Positives = 128/198 (64%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P + LEA    +    +AG+DEVGRG LAGPV  AA+ILDP NIP G+NDSKK+S K+RE
Sbjct: 4   PDYTLEAAAHGRGQIRIAGVDEVGRGPLAGPVTAAAVILDPENIPEGLNDSKKLSAKRRE 63

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            +   I + A ++I+ AS + ID  NI +A+  A+  AV  L   P   LIDG  IP+ L
Sbjct: 64  AVEASIFAQAEVAIAHASVEEIDSLNILRASHLAMERAVAALDPAPDYLLIDGNLIPKGL 123

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              A  VIKGD+ S+SIAAASI+AK  RDR+M    +++P YG++ + GYP+ +H++ + 
Sbjct: 124 LQPAEFVIKGDAKSVSIAAASIVAKQARDRIMVDLAQQFPGYGWEKNAGYPSKQHREALV 183

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G +  HR +F+P+  +
Sbjct: 184 SLGVTPHHRRSFKPVHKM 201


>gi|163745410|ref|ZP_02152770.1| ribonuclease HII [Oceanibulbus indolifex HEL-45]
 gi|161382228|gb|EDQ06637.1| ribonuclease HII [Oceanibulbus indolifex HEL-45]
          Length = 218

 Score =  167 bits (423), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 83/201 (41%), Positives = 127/201 (63%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           P  P FE E     +    +AG+DEVGRG LAGPV  AA++     IP G+NDSKK++ +
Sbjct: 9   PMIPDFEFERGAITRGFRTIAGVDEVGRGPLAGPVTAAAVVFTEGQIPEGLNDSKKLTAR 68

Query: 67  KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
            RE LY++I S A++ ++ A+ + I++HNI +A+  A+  A+  L      ALIDG  +P
Sbjct: 69  ARERLYDEIMSMAVVCVAHATVEEIEEHNILRASHLAMTRALAGLACAADYALIDGNMLP 128

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            DL   A  V+KGD+  LSI+AASI+AK  RDRLM    +++P YG+++++GY +  H  
Sbjct: 129 RDLSLPAQPVVKGDARCLSISAASIVAKTVRDRLMVDLAQQHPGYGWETNMGYGSKSHMA 188

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            +++ G +  HR  F+P+ N+
Sbjct: 189 ALRDLGVTPHHRRLFKPIHNI 209


>gi|260425244|ref|ZP_05779224.1| ribonuclease HII [Citreicella sp. SE45]
 gi|260423184|gb|EEX16434.1| ribonuclease HII [Citreicella sp. SE45]
          Length = 191

 Score =  167 bits (422), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 127/182 (69%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           +AG+DEVGRG LAGPVV AA++LDP  +P G+NDSKK++ K+R  L   +   A +SI S
Sbjct: 1   MAGVDEVGRGPLAGPVVAAAVVLDPRWVPPGLNDSKKLTAKRRARLSAWLWECAEVSIGS 60

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           AS + ID+ NI +A+L A++ AV  L+  P   L+DGR +P  LPC+A  +IKGD  S+S
Sbjct: 61  ASVEEIDQLNILQASLLAMHRAVTGLENAPGHVLVDGRFLPPQLPCEATPIIKGDGRSVS 120

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           IAAAS++AK+ RDRLMR   + +P YG++++ GY +  H+  ++  G +  HR +F+P+ 
Sbjct: 121 IAAASVVAKIWRDRLMRDLAQHHPGYGWETNAGYGSKSHKLALQNLGVTPHHRRSFKPIH 180

Query: 206 NL 207
           N+
Sbjct: 181 NI 182


>gi|268590518|ref|ZP_06124739.1| ribonuclease HII [Providencia rettgeri DSM 1131]
 gi|291314104|gb|EFE54557.1| ribonuclease HII [Providencia rettgeri DSM 1131]
          Length = 197

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 91/181 (50%), Positives = 118/181 (65%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK++ KKRE+L+++I   A+   I 
Sbjct: 11  IAGVDEVGRGPLVGAVVTAAVILDPNNPIIGLADSKKLTEKKREKLFDEIQEKALCWCIG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID  NI  AT+ A+  AV  L +IP   LIDG   PE LP  + AVIKGDS+  
Sbjct: 71  RAEPEEIDNINILHATMLAMQRAVAGLSIIPEYVLIDGNRCPE-LPMPSQAVIKGDSLVQ 129

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RDR M    K +P+YGF  H GYPTA H + + + G +  HR +F P+
Sbjct: 130 EISAASILAKVIRDREMVELDKAFPEYGFAKHKGYPTAYHLEKLAQYGATEFHRKSFAPV 189

Query: 205 R 205
           R
Sbjct: 190 R 190


>gi|226945927|ref|YP_002801000.1| ribonuclease HII [Azotobacter vinelandii DJ]
 gi|259494062|sp|C1DST2|RNH2_AZOVD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|226720854|gb|ACO80025.1| Ribonuclease HII [Azotobacter vinelandii DJ]
          Length = 207

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/184 (51%), Positives = 117/184 (63%), Gaps = 4/184 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S  +RE L E+I   A+   I+
Sbjct: 14  VAGVDEVGRGPLCGAVVTAAVILDPERPILGLNDSKKLSEARREALSEEIREKALAWCIA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            A  + ID+ NI  AT+ A+  AVE L V PR ALIDG   P+  +PC    VIKGD+  
Sbjct: 74  RAEVEEIDRLNILHATMLAMRRAVEGLAVTPRLALIDGNRCPKLAVPCAP--VIKGDAQV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV RDR M +    YP YG   H GYPTA H + +   GP+ IHR +F P
Sbjct: 132 PAIAAASILAKVARDREMLVLDALYPGYGLARHKGYPTAVHLEALARLGPTPIHRRSFAP 191

Query: 204 LRNL 207
           +R L
Sbjct: 192 VREL 195


>gi|323466644|gb|ADX70331.1| Ribonuclease HII [Lactobacillus helveticus H10]
          Length = 250

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 97/199 (48%), Positives = 125/199 (62%), Gaps = 7/199 (3%)

Query: 14  LEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           LE    EK  W     VAG+DEVGRG LAGPVV AA+I+D N     +NDSKK+S +KR 
Sbjct: 52  LERFSYEKQFWQKGELVAGVDEVGRGPLAGPVVTAAVIIDHNFDLLEVNDSKKLSPEKRL 111

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           +LY KI S AI + I   S   ID+ NI++A   A+  AV+ L V P + L+D  ++P D
Sbjct: 112 QLYPKILSEAISVGIGVKSAAVIDQINIYEADRQAMAQAVKALDVKPNALLVDAMNVPVD 171

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LP     +IKGD+ S SIAAASI+AKV RD+LM    K YP YGF  + GY T +H   +
Sbjct: 172 LP--QIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFPRNAGYGTKEHIDAL 229

Query: 189 KEKGPSCIHRLTFRPLRNL 207
           K+ GP+ IHR TF P+ + 
Sbjct: 230 KKYGPTPIHRKTFAPVSDF 248


>gi|268318031|ref|YP_003291750.1| Ribonuclease H [Rhodothermus marinus DSM 4252]
 gi|262335565|gb|ACY49362.1| Ribonuclease H [Rhodothermus marinus DSM 4252]
          Length = 198

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/178 (50%), Positives = 118/178 (66%), Gaps = 1/178 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG LAGPVV AA+IL P+    G+ DSK++  + RE+L E+I + A+ I I 
Sbjct: 18  VAGVDEVGRGCLAGPVVAAAVILPPHVQLDGVRDSKQLRPEVREKLAEQIRAQALAIGIG 77

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             + + ID+ NI  A L+A+  AV NL++ P   LIDG     D PC A  ++KGD  SL
Sbjct: 78  MCTPEEIDRLNILNAALEAMRRAVANLELTPDYLLIDGNRCFSDPPCPAKPIVKGDQQSL 137

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            IAAASIIAK TRD LM+  H+++P YG+D +VGYPT  H + +   GPS  HR +FR
Sbjct: 138 LIAAASIIAKTTRDALMQQLHEEFPVYGWDRNVGYPTRTHYEALARYGPSPYHRRSFR 195


>gi|260101617|ref|ZP_05751854.1| ribonuclease HII [Lactobacillus helveticus DSM 20075]
 gi|260084580|gb|EEW68700.1| ribonuclease HII [Lactobacillus helveticus DSM 20075]
          Length = 250

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/199 (48%), Positives = 125/199 (62%), Gaps = 7/199 (3%)

Query: 14  LEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           LE    EK  W     VAG+DEVGRG LAGPVV AA+I+D N     +NDSKK+S +KR 
Sbjct: 52  LERFSYEKQFWQKDELVAGVDEVGRGPLAGPVVTAAVIIDHNFDLLEVNDSKKLSPEKRL 111

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           +LY KI S A+ + I   S   ID+ NI++A   A+  AV+ L V P + L+D  ++P D
Sbjct: 112 QLYPKILSEAVSVGIGVKSAAVIDQINIYEADRQAMAQAVKALDVKPNALLVDAMNVPVD 171

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LP     +IKGD+ S SIAAASI+AKV RD+LM    K YP YGF  + GY T +H   +
Sbjct: 172 LP--QIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFPRNAGYGTKEHIDAL 229

Query: 189 KEKGPSCIHRLTFRPLRNL 207
           K+ GP+ IHR TF P+ + 
Sbjct: 230 KKYGPTPIHRKTFAPVSDF 248


>gi|88798271|ref|ZP_01113857.1| ribonuclease HII [Reinekea sp. MED297]
 gi|88779047|gb|EAR10236.1| ribonuclease HII [Reinekea sp. MED297]
          Length = 202

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 91/183 (49%), Positives = 122/183 (66%), Gaps = 1/183 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG LAG VV AA+ILDP     G+NDSKK+S  +R  L + I  +A+  +++
Sbjct: 15  VAGVDEVGRGPLAGKVVTAAVILDPARPIDGLNDSKKLSPARRLALSQHIRENALSYAVA 74

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID+ NI  AT+ A+  AVE L V P   LIDG  +P  LPC A A++KGD    
Sbjct: 75  EASVEEIDELNILGATMLAMRRAVEALSVAPNFCLIDGNRLPPGLPCPAEAIVKGDGSVP 134

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKVTRD+ M   H+++P+YGFD H GY TA+H   + + GP   HR +F P+
Sbjct: 135 AISAASILAKVTRDQQMLDLHQQHPEYGFDQHKGYGTAQHLAALVKFGPLKEHRRSFAPV 194

Query: 205 RNL 207
           R L
Sbjct: 195 RKL 197


>gi|294140018|ref|YP_003555996.1| ribonuclease HII [Shewanella violacea DSS12]
 gi|293326487|dbj|BAJ01218.1| ribonuclease HII [Shewanella violacea DSS12]
          Length = 218

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 90/187 (48%), Positives = 119/187 (63%), Gaps = 8/187 (4%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KKRE L+ +I   A+ IS+  
Sbjct: 21  AGVDEVGRGPLVGNVVTAAVILDPNNPILGLNDSKKLSEKKREALFTEIHEKALSISVGH 80

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-------EDLPCQAFAVIK 138
           AS + ID+ NI  AT+ A+  AV  L++ P   L+DG   P        +L  +A A++K
Sbjct: 81  ASPEEIDELNILHATMLAMQRAVAGLEIKPVKVLVDGNRTPIFHHGDNTELAIEAHAIVK 140

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD +   I+AASIIAKV RDR M +   ++P YGF  H GYPT  H Q +++ G    HR
Sbjct: 141 GDGLIAGISAASIIAKVIRDREMELLDMEHPQYGFAKHKGYPTKAHFQALEQHGVLAEHR 200

Query: 199 LTFRPLR 205
            +FRP+R
Sbjct: 201 KSFRPVR 207


>gi|97182194|sp|Q5PBG2|RNH2_ANAMM RecName: Full=Ribonuclease HII; Short=RNase HII
          Length = 243

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 2/201 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKK 67
           P F +E  +R   +  + G+DEVG GA+AGPVV AA+ L      +   I DSK +S KK
Sbjct: 9   PSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKALSSKK 68

Query: 68  REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           REEL+ KIT+ A   +  A  + I++HNI  A+  ++  A++NL V     L+DG   P 
Sbjct: 69  REELFCKITAHAKYGVGFARVREIEQHNILVASHISMKRALQNLGVKADLVLVDGSRAPA 128

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            LP     ++KGDSIS SIAAASIIAKVTRDR MR  H++YP+Y ++ + GY T  H Q 
Sbjct: 129 GLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKAHMQS 188

Query: 188 IKEKGPSCIHRLTFRPLRNLS 208
           +K  G +  HR TF P++ LS
Sbjct: 189 LKLYGKTAQHRSTFAPVKQLS 209


>gi|161507470|ref|YP_001577424.1| ribonuclease HII [Lactobacillus helveticus DPC 4571]
 gi|172048283|sp|A8YV45|RNH2_LACH4 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|160348459|gb|ABX27133.1| ribonuclease HII [Lactobacillus helveticus DPC 4571]
          Length = 250

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/199 (48%), Positives = 125/199 (62%), Gaps = 7/199 (3%)

Query: 14  LEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           LE    EK  W     VAG+DEVGRG LAGPVV AA+I+D N     +NDSKK+S +KR 
Sbjct: 52  LERFSYEKQFWQKGELVAGVDEVGRGPLAGPVVTAAVIIDHNFDLLEVNDSKKLSPEKRL 111

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           +LY KI S A+ + I   S   ID+ NI++A   A+  AV+ L V P + L+D  ++P D
Sbjct: 112 QLYPKILSEAVSVGIGVKSAAVIDQINIYEADRQAMAQAVKALDVKPNALLVDAMNVPVD 171

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LP     +IKGD+ S SIAAASI+AKV RD+LM    K YP YGF  + GY T +H   +
Sbjct: 172 LP--QIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFPRNAGYGTKEHIDAL 229

Query: 189 KEKGPSCIHRLTFRPLRNL 207
           K+ GP+ IHR TF P+ + 
Sbjct: 230 KKYGPTPIHRKTFAPVSDF 248


>gi|212710383|ref|ZP_03318511.1| hypothetical protein PROVALCAL_01443 [Providencia alcalifaciens DSM
           30120]
 gi|212686965|gb|EEB46493.1| hypothetical protein PROVALCAL_01443 [Providencia alcalifaciens DSM
           30120]
          Length = 196

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 91/182 (50%), Positives = 120/182 (65%), Gaps = 4/182 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKRE+L+++I   A+   I 
Sbjct: 11  IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKREKLFDEIKEKALCWCIG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            A  + ID+ NI  AT+ A+  AVE L + P   L+DG   P+ D+P QA  V+KGDS+ 
Sbjct: 71  RAEPEEIDQLNILHATMLAMQRAVEGLLIKPEFVLVDGNRCPKLDMPSQA--VVKGDSLV 128

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKV RDR M    K +P+YGF  H GYPTA H + + E G +  HR +F P
Sbjct: 129 QEISAASILAKVVRDREMVELDKAFPEYGFAKHKGYPTAYHLEKLAEFGATEFHRKSFAP 188

Query: 204 LR 205
           +R
Sbjct: 189 VR 190


>gi|197119787|ref|YP_002140214.1| ribonuclease HII [Geobacter bemidjiensis Bem]
 gi|254807977|sp|B5EBC6|RNH2_GEOBB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|197089147|gb|ACH40418.1| ribonuclease HII [Geobacter bemidjiensis Bem]
          Length = 230

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 97/199 (48%), Positives = 123/199 (61%), Gaps = 6/199 (3%)

Query: 7   PERP--HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           PE P     LE     +  + +AGIDE GRG LAGPVV AA++L    +  G+NDSK+++
Sbjct: 9   PEAPIDLLALEGQALRRGYFRIAGIDEAGRGPLAGPVVAAAVMLPAGLLLPGVNDSKQLT 68

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            +KREEL++ I   A+ + +    H  +D  NI +ATL A+  AV  L + P   LIDG 
Sbjct: 69  EEKREELFDVIHREALAVGVGIGDHALVDSINILQATLSAMRDAVRALSITPGFLLIDGI 128

Query: 124 S-IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
           S IP ++P +   V KGDS+SLSIAAASIIAKVTRDR+M     +YP YGF SH GY  A
Sbjct: 129 SNIPMNIPQRT--VKKGDSLSLSIAAASIIAKVTRDRMMVEYDAQYPGYGFASHKGYGAA 186

Query: 183 KHQQVIKEKGPSCIHRLTF 201
            H   I E GP  IHR TF
Sbjct: 187 SHLAAIAELGPCPIHRKTF 205


>gi|158424022|ref|YP_001525314.1| ribonuclease HII [Azorhizobium caulinodans ORS 571]
 gi|189043564|sp|A8I6E6|RNH2_AZOC5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|158330911|dbj|BAF88396.1| ribonuclease H [Azorhizobium caulinodans ORS 571]
          Length = 259

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/194 (48%), Positives = 126/194 (64%), Gaps = 1/194 (0%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F+ E  V +  M PVAG DE GRG LAGPVV AA+ILDP  IP G++DSKK++  +RE L
Sbjct: 43  FKRERAVLKSGMAPVAGADEAGRGPLAGPVVAAAVILDPKRIPAGLDDSKKLTATRREAL 102

Query: 72  YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           +++I ++A +S+  A    ID+ NI +ATL A+ +AV+ L   PR   +DG   P  L C
Sbjct: 103 FDEICATAEVSVVMAPPSRIDRDNIRQATLWALANAVKGLPEDPRLVFVDGNDRPP-LEC 161

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   VI GD +  SIAAASI+AKVTRDRLM      +P YGF+ H+GY TA+H   ++  
Sbjct: 162 EVEMVIGGDGLIASIAAASIVAKVTRDRLMVGLGAAFPGYGFERHMGYGTAEHGAALRRL 221

Query: 192 GPSCIHRLTFRPLR 205
           GP   HR +F P+R
Sbjct: 222 GPCRHHRTSFAPVR 235


>gi|171318092|ref|ZP_02907261.1| Ribonuclease H [Burkholderia ambifaria MEX-5]
 gi|171096716|gb|EDT41601.1| Ribonuclease H [Burkholderia ambifaria MEX-5]
          Length = 217

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/182 (49%), Positives = 122/182 (67%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS-SAIISIS 84
           V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKR+ LY+ I + S+   ++
Sbjct: 28  VCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKALSAKKRDALYDLIVARSSAYCVA 87

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS   ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  +A A++ GD++  
Sbjct: 88  SASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LMVRAEAIVSGDALVP 146

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI+AASI+AKVTRDR++   H+++P YGF+ HVGY T KH   ++E GP  +HR +F P+
Sbjct: 147 SISAASILAKVTRDRMLVDLHERFPVYGFNVHVGYSTPKHLAALREHGPCEVHRRSFAPV 206

Query: 205 RN 206
           R 
Sbjct: 207 RE 208


>gi|255004020|ref|ZP_05278821.1| ribonuclease HII (rnhB) [Anaplasma marginale str. Virginia]
          Length = 239

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 2/201 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKK 67
           P F +E  +R   +  + G+DEVG GA+AGPVV AA+ L      +   I DSK +S KK
Sbjct: 5   PSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKALSSKK 64

Query: 68  REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           REEL+ KIT+ A   +  A  + I++HNI  A+  ++  A++NL V     L+DG   P 
Sbjct: 65  REELFCKITAHARYGVGFARVREIEQHNILVASHISMKRALQNLGVKADLVLVDGSRAPA 124

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            LP     ++KGDSIS SIAAASIIAKVTRDR MR  H++YP+Y ++ + GY T  H Q 
Sbjct: 125 GLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKAHMQS 184

Query: 188 IKEKGPSCIHRLTFRPLRNLS 208
           +K  G +  HR TF P++ LS
Sbjct: 185 LKLYGKTAQHRSTFAPVKQLS 205


>gi|254994768|ref|ZP_05276958.1| ribonuclease HII (rnhB) [Anaplasma marginale str. Mississippi]
          Length = 239

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 2/201 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKK 67
           P F +E  +R   +  + G+DEVG GA+AGPVV AA+ L      +   I DSK +S KK
Sbjct: 5   PSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKALSSKK 64

Query: 68  REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           REEL+ KIT+ A   +  A  + I++HNI  A+  ++  A++NL V     L+DG   P 
Sbjct: 65  REELFCKITAHARYGVGFARVREIEQHNILVASHISMKRALQNLGVKADLVLVDGSRAPA 124

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            LP     ++KGDSIS SIAAASIIAKVTRDR MR  H++YP+Y ++ + GY T  H Q 
Sbjct: 125 GLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKAHMQS 184

Query: 188 IKEKGPSCIHRLTFRPLRNLS 208
           +K  G +  HR TF P++ LS
Sbjct: 185 LKLYGKTAQHRSTFAPVKQLS 205


>gi|170723229|ref|YP_001750917.1| ribonuclease HII [Pseudomonas putida W619]
 gi|229564298|sp|B1JBP6|RNH2_PSEPW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|169761232|gb|ACA74548.1| Ribonuclease H [Pseudomonas putida W619]
          Length = 207

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 92/181 (50%), Positives = 117/181 (64%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  KRE L+++I + A+   I+
Sbjct: 14  VAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEAKREALFDEICAKALSFCIA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI +AT+ A+  AVE L V P+ ALIDG   P+ L   A  VIKGDS   
Sbjct: 74  RAEVEEIDRLNILQATMLAMQRAVEGLSVTPKLALIDGNRCPK-LSVPAAPVIKGDSQVP 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKVTRDR M      YP YG   H GYPT  H + +   GP+ IHR +F P+
Sbjct: 133 AIAAASILAKVTRDREMSAFELIYPGYGMGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 192

Query: 205 R 205
           R
Sbjct: 193 R 193


>gi|262372179|ref|ZP_06065458.1| ribonuclease HII [Acinetobacter junii SH205]
 gi|262312204|gb|EEY93289.1| ribonuclease HII [Acinetobacter junii SH205]
          Length = 188

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 86/181 (47%), Positives = 117/181 (64%), Gaps = 1/181 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DE GRG L G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I   A+  SI+
Sbjct: 3   VAGVDEAGRGPLVGSVVAAAVILDPNNPIEGLNDSKKLTEKKREKLFIEIKEKALAWSIA 62

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A+H  ID+ NI +AT  A+  AVENL+  P   ++DG  IP+ +     A++ GD+   
Sbjct: 63  EATHTEIDEMNILQATFLAMRRAVENLKTTPHKVIVDGNQIPKGIEIACEAIVGGDATHA 122

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M+   + YPDYGF  H GYPT  H + I   G    HR ++ P+
Sbjct: 123 EISAASILAKVTRDHQMKTLDELYPDYGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYAPV 182

Query: 205 R 205
           +
Sbjct: 183 K 183


>gi|15834918|ref|NP_296677.1| ribonuclease HII [Chlamydia muridarum Nigg]
 gi|270285088|ref|ZP_06194482.1| ribonuclease HII [Chlamydia muridarum Nigg]
 gi|270289111|ref|ZP_06195413.1| ribonuclease HII [Chlamydia muridarum Weiss]
 gi|301336484|ref|ZP_07224686.1| ribonuclease HII [Chlamydia muridarum MopnTet14]
 gi|11387107|sp|Q9PL10|RNH2_CHLMU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|8163191|gb|AAF73545.1| ribonuclease HII [Chlamydia muridarum Nigg]
          Length = 217

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/206 (44%), Positives = 126/206 (61%), Gaps = 14/206 (6%)

Query: 13  ELEAMVREKNMWP----------VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62
           E E + REK+++           +AG+DE GRG LAGPVV  A IL    +  GI+DSKK
Sbjct: 6   EQELLFREKSVFEDQAIKQGYSRIAGVDEAGRGPLAGPVVAGACILPGGKLFLGIDDSKK 65

Query: 63  ISHKKREELYEKITSSAIIS--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           +S K+R  LYE +     ++  +   S + ID+ NI +AT +A+  A+ +L+  P   L+
Sbjct: 66  LSPKQRRYLYELLLEDPEVTCGVGVVSVERIDEINILEATKEAMVQAIASLRSTPDFLLV 125

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG  +P ++PC    +IKGDS S+SIAAASIIAK  RD LMR  H +YP+YGFD H GY 
Sbjct: 126 DGLFLPHEIPC--LKIIKGDSRSVSIAAASIIAKEYRDELMRKLHSEYPEYGFDKHKGYG 183

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206
           T  H Q +K+ GP   HR +F P++ 
Sbjct: 184 TVAHLQALKQFGPCVYHRKSFSPVKE 209


>gi|85059907|ref|YP_455609.1| ribonuclease HII [Sodalis glossinidius str. 'morsitans']
 gi|97189300|sp|Q2NRM1|RNH2_SODGM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|84780427|dbj|BAE75204.1| ribonuclease HII [Sodalis glossinidius str. 'morsitans']
          Length = 198

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/183 (49%), Positives = 118/183 (64%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+RE LYE+IT  A+  S+ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPARPVLGLADSKKLSEKRREALYEEITRYALAWSVG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID  NI++ATL A+  AV  L V+P   L+DG   P  LP  + A++KGDS   
Sbjct: 73  RAEASEIDSINIYQATLLAMQRAVAALAVVPDFVLVDGNRCPL-LPMPSQAIVKGDSRVA 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKVTRDR M   H ++P+YGF  H GYPTA H + +   G +  HR +F P+
Sbjct: 132 EISAASIIAKVTRDREMAALHLQFPEYGFAQHKGYPTAFHLEKLALHGATVHHRRSFAPV 191

Query: 205 RNL 207
           R +
Sbjct: 192 RRV 194


>gi|170699887|ref|ZP_02890917.1| Ribonuclease H [Burkholderia ambifaria IOP40-10]
 gi|170135209|gb|EDT03507.1| Ribonuclease H [Burkholderia ambifaria IOP40-10]
          Length = 217

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/182 (49%), Positives = 121/182 (66%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84
           V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKR+ LY+ I + A    ++
Sbjct: 28  VCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKALSAKKRDALYDLIVARASAYCVA 87

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS   ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  +A A++ GD++  
Sbjct: 88  SASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LTVRAEAIVSGDALVP 146

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI+AASI+AKVTRDR++   H+++P YGF+ HVGY T KH   ++E GP  +HR +F P+
Sbjct: 147 SISAASILAKVTRDRMLVDLHERFPVYGFNVHVGYSTPKHLAALREHGPCEVHRRSFAPV 206

Query: 205 RN 206
           R 
Sbjct: 207 RE 208


>gi|89052882|ref|YP_508333.1| ribonuclease H [Jannaschia sp. CCS1]
 gi|122499674|sp|Q28VF4|RNH2_JANSC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|88862431|gb|ABD53308.1| RNase HII [Jannaschia sp. CCS1]
          Length = 199

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/195 (46%), Positives = 123/195 (63%), Gaps = 4/195 (2%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P FE+E   RE     VAG+DEVGRG  AGPV   A++LDP  +P G+NDSKK+S  +R+
Sbjct: 3   PDFEIE---RELGGL-VAGVDEVGRGPWAGPVTACAVVLDPMQVPDGLNDSKKLSEARRD 58

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L  +I   A +S+  AS + ID  NI +AT  A+  A++ L   P  ALIDG +IP  L
Sbjct: 59  ALAMQILRVADVSLGWASVEEIDALNIRQATFLAMRRAMDGLTTPPTHALIDGNAIPPGL 118

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C A  V+KGD  S+SIAAASI+AKV RD LM+     +P YG+++++GY TAKH   + 
Sbjct: 119 SCPATCVVKGDGRSVSIAAASIVAKVRRDALMKELAVMHPGYGWETNMGYGTAKHAAGLH 178

Query: 190 EKGPSCIHRLTFRPL 204
             G +  HR +F P+
Sbjct: 179 HLGVTQYHRRSFAPI 193


>gi|78066784|ref|YP_369553.1| ribonuclease HII [Burkholderia sp. 383]
 gi|97182346|sp|Q39F57|RNH2_BURS3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|77967529|gb|ABB08909.1| Ribonuclease H [Burkholderia sp. 383]
          Length = 214

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/181 (49%), Positives = 121/181 (66%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKR+ LYE I + ++   ++
Sbjct: 28  VCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLDDSKALSAKKRDALYELIVARSLSYCVA 87

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS   ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  +A A++ GD++  
Sbjct: 88  SASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LTVRAEAIVSGDALVP 146

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI+AASI+AKVTRDR++   H+++P YGF+ H GY TAKH   ++E GP   HR +F P+
Sbjct: 147 SISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAHRRSFAPV 206

Query: 205 R 205
           R
Sbjct: 207 R 207


>gi|115352089|ref|YP_773928.1| ribonuclease HII [Burkholderia ambifaria AMMD]
 gi|122322850|sp|Q0BE29|RNH2_BURCM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|115282077|gb|ABI87594.1| Ribonuclease H [Burkholderia ambifaria AMMD]
          Length = 217

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/182 (48%), Positives = 121/182 (66%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84
           V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKR+ LY+ I + A    ++
Sbjct: 28  VCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKALSAKKRDALYDLIVARASAFCVA 87

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS   ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  +A A++ GD++  
Sbjct: 88  SASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LTVRAEAIVSGDALVP 146

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI+AASI+AKVTRDR++   H+++P YGF+ HVGY T +H   ++E GP  +HR +F P+
Sbjct: 147 SISAASILAKVTRDRMLVDLHERFPVYGFNMHVGYSTPQHLAALREHGPCEVHRRSFAPV 206

Query: 205 RN 206
           R 
Sbjct: 207 RE 208


>gi|116492734|ref|YP_804469.1| ribonuclease HII [Pediococcus pentosaceus ATCC 25745]
 gi|122265802|sp|Q03FJ5|RNH2_PEDPA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|116102884|gb|ABJ68027.1| Ribonuclease HII [Pediococcus pentosaceus ATCC 25745]
          Length = 255

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/191 (49%), Positives = 122/191 (63%), Gaps = 8/191 (4%)

Query: 20  EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E+ +W      VAGIDEVGRG LAGPVV A+++LD       +NDSK++S + REELY K
Sbjct: 61  ERELWSNGIDLVAGIDEVGRGCLAGPVVTASVVLDETFDLIDVNDSKQLSSELREELYAK 120

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I + A+ + I   S+Q ID+ NI  AT  A+  AV NL V P+  LID  + P ++P   
Sbjct: 121 ILTEAVSVGIGVCSNQKIDEVNILNATKLAMREAVGNLNVTPQHLLIDAVNAPIEIP--K 178

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             + KGDS S+SIAAASI+AKV RD LMR     YP YGFD +VGY T +H + +K  G 
Sbjct: 179 TVMFKGDSKSISIAAASIVAKVYRDHLMRSYAALYPGYGFDKNVGYGTKQHIEGLKTYGV 238

Query: 194 SCIHRLTFRPL 204
           + IHR TF P+
Sbjct: 239 TPIHRQTFEPV 249


>gi|56416548|ref|YP_153622.1| ribonuclease HII [Anaplasma marginale str. St. Maries]
 gi|56387780|gb|AAV86367.1| ribonuclease HII [Anaplasma marginale str. St. Maries]
          Length = 339

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 2/201 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKK 67
           P F +E  +R   +  + G+DEVG GA+AGPVV AA+ L      +   I DSK +S KK
Sbjct: 105 PSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKALSSKK 164

Query: 68  REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           REEL+ KIT+ A   +  A  + I++HNI  A+  ++  A++NL V     L+DG   P 
Sbjct: 165 REELFCKITAHAKYGVGFARVREIEQHNILVASHISMKRALQNLGVKADLVLVDGSRAPA 224

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            LP     ++KGDSIS SIAAASIIAKVTRDR MR  H++YP+Y ++ + GY T  H Q 
Sbjct: 225 GLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKAHMQS 284

Query: 188 IKEKGPSCIHRLTFRPLRNLS 208
           +K  G +  HR TF P++ LS
Sbjct: 285 LKLYGKTAQHRSTFAPVKQLS 305


>gi|328467373|gb|EGF38451.1| ribonuclease HII [Lactobacillus helveticus MTCC 5463]
          Length = 249

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/196 (48%), Positives = 124/196 (63%), Gaps = 7/196 (3%)

Query: 14  LEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           LE    EK  W     VAG+DEVGRG LAGPVV AA+I+D N     +NDSKK+S +KR 
Sbjct: 52  LERFSYEKQFWQKDELVAGVDEVGRGPLAGPVVTAAVIIDHNFDLLEVNDSKKLSPEKRL 111

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           +LY KI S A+ + I   S   ID+ NI++A   A+  AV+ L V P + L+D  ++P D
Sbjct: 112 QLYPKILSEAVSVGIGVKSAAVIDQINIYEADRQAMAQAVKALDVKPNALLVDAMNVPVD 171

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LP     +IKGD+ S SIAAASI+AKV RD+LM    K YP YGF  + GY T +H   +
Sbjct: 172 LP--QIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFPRNAGYGTKEHIDAL 229

Query: 189 KEKGPSCIHRLTFRPL 204
           K+ GP+ IHR TF P+
Sbjct: 230 KKYGPTPIHRKTFAPV 245


>gi|222474916|ref|YP_002563331.1| ribonuclease HII (rnhB) [Anaplasma marginale str. Florida]
 gi|222419052|gb|ACM49075.1| ribonuclease HII (rnhB) [Anaplasma marginale str. Florida]
          Length = 339

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 2/201 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKK 67
           P F +E  +R   +  + G+DEVG GA+AGPVV AA+ L      +   I DSK +S KK
Sbjct: 105 PSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKALSSKK 164

Query: 68  REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           REEL+ KIT+ A   +  A  + I++HNI  A+  ++  A++NL V     L+DG   P 
Sbjct: 165 REELFCKITAHARYGVGFARVREIEQHNILVASHISMKRALQNLGVKADLVLVDGSRAPA 224

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            LP     ++KGDSIS SIAAASIIAKVTRDR MR  H++YP+Y ++ + GY T  H Q 
Sbjct: 225 GLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKAHMQS 284

Query: 188 IKEKGPSCIHRLTFRPLRNLS 208
           +K  G +  HR TF P++ LS
Sbjct: 285 LKLYGKTAQHRSTFAPVKQLS 305


>gi|167586869|ref|ZP_02379257.1| ribonuclease HII [Burkholderia ubonensis Bu]
          Length = 214

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/181 (50%), Positives = 120/181 (66%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS-SAIISIS 84
           V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKR+ LYE I + S    ++
Sbjct: 28  VCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLDDSKALSAKKRDALYELIVARSRAYCVA 87

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS   ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  +A A++ GD++  
Sbjct: 88  SASVDEIDTLNILHATMLAMKRAVEGLAVVPTLAQIDGNRCPT-LSVRAEAIVSGDALVP 146

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI+AASI+AKVTRDR++   H+++P YGF+ H GY TAKH   ++E GP   HR +F P+
Sbjct: 147 SISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAHRRSFAPV 206

Query: 205 R 205
           R
Sbjct: 207 R 207


>gi|260913166|ref|ZP_05919648.1| ribonuclease HII [Pasteurella dagmatis ATCC 43325]
 gi|260632753|gb|EEX50922.1| ribonuclease HII [Pasteurella dagmatis ATCC 43325]
          Length = 197

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/183 (49%), Positives = 118/183 (64%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KKR  L E+I   A+  S+ 
Sbjct: 12  IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLNDSKKLSEKKRLALAEEIKQKALAWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AVENL++ P   L+DG  +P D+   A A++KGDS+  
Sbjct: 72  RAEPEEIDELNILHATMLAMKRAVENLKIQPHLVLVDGNRVP-DVVMPAQAIVKGDSLVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD  M    K+YP Y F  H GYPT  H + + E GP   HR +F P+
Sbjct: 131 EISAASILAKVARDHEMEELDKQYPQYAFAKHKGYPTKLHLEKLAEFGPLPEHRRSFSPV 190

Query: 205 RNL 207
           R L
Sbjct: 191 RKL 193


>gi|212212281|ref|YP_002303217.1| ribonuclease HII [Coxiella burnetii CbuG_Q212]
 gi|238056775|sp|B6IZE4|RNH2_COXB2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|212010691|gb|ACJ18072.1| ribonuclease HII [Coxiella burnetii CbuG_Q212]
          Length = 202

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/185 (49%), Positives = 120/185 (64%), Gaps = 2/185 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84
           +AG+DE GRG LAGPV+ AA+IL+P  I  G+ DSKK+S KKREELYEKI T+    +I+
Sbjct: 14  IAGVDEAGRGPLAGPVITAAVILNPEIIIEGLADSKKLSLKKREELYEKIITNCKAFAIA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI +ATL A+  A+  L + P   LIDG   P DLP +  A+++GD    
Sbjct: 74  RADVEEIDRLNIFRATLLAMQRAINQLSIQPDKVLIDGHCCP-DLPYETQAIVQGDQNVP 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKVTRDR M     +YPDYGF  H GY T  H   I   G + +HR +F P+
Sbjct: 133 AISAASILAKVTRDREMLKYDAQYPDYGFAIHKGYGTKAHLAAIHRFGITPVHRKSFEPV 192

Query: 205 RNLSV 209
           R L +
Sbjct: 193 RQLKL 197


>gi|29654636|ref|NP_820328.1| ribonuclease HII [Coxiella burnetii RSA 493]
 gi|153208943|ref|ZP_01947156.1| ribonuclease HII [Coxiella burnetii 'MSU Goat Q177']
 gi|154706026|ref|YP_001424775.1| ribonuclease HII [Coxiella burnetii Dugway 5J108-111]
 gi|161830417|ref|YP_001597185.1| ribonuclease HII [Coxiella burnetii RSA 331]
 gi|165924003|ref|ZP_02219835.1| ribonuclease HII [Coxiella burnetii RSA 334]
 gi|212218749|ref|YP_002305536.1| ribonuclease HII [Coxiella burnetii CbuK_Q154]
 gi|39932366|sp|Q83BZ8|RNH2_COXBU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|189043589|sp|A9KGD3|RNH2_COXBN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|189043590|sp|A9N8L5|RNH2_COXBR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238056774|sp|B6J7Z2|RNH2_COXB1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|29541904|gb|AAO90842.1| ribonuclease HII [Coxiella burnetii RSA 493]
 gi|120575601|gb|EAX32225.1| ribonuclease HII [Coxiella burnetii 'MSU Goat Q177']
 gi|154355312|gb|ABS76774.1| ribonuclease HII [Coxiella burnetii Dugway 5J108-111]
 gi|161762284|gb|ABX77926.1| ribonuclease HII [Coxiella burnetii RSA 331]
 gi|165916548|gb|EDR35152.1| ribonuclease HII [Coxiella burnetii RSA 334]
 gi|212013011|gb|ACJ20391.1| ribonuclease HII [Coxiella burnetii CbuK_Q154]
          Length = 202

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/185 (49%), Positives = 120/185 (64%), Gaps = 2/185 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84
           +AG+DE GRG LAGPV+ AA+IL+P  I  G+ DSKK+S KKREELYEKI T+    +I+
Sbjct: 14  IAGVDEAGRGPLAGPVITAAVILNPEIIIEGLADSKKLSLKKREELYEKIITNCKAFAIA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI +ATL A+  A+  L + P   LIDG   P DLP +  A+++GD    
Sbjct: 74  RADVEEIDRLNIFRATLLAMQRAINQLSIQPDKVLIDGHCCP-DLPYETQAIVQGDQNVP 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKVTRDR M     +YPDYGF  H GY T  H   I   G + +HR +F P+
Sbjct: 133 AISAASILAKVTRDREMLKYDAQYPDYGFAIHKGYGTKAHLAAIHRFGITPVHRKSFEPV 192

Query: 205 RNLSV 209
           R L +
Sbjct: 193 RQLKL 197


>gi|15603863|ref|NP_246937.1| ribonuclease HII [Pasteurella multocida subsp. multocida str. Pm70]
 gi|13431849|sp|P57986|RNH2_PASMU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|12722439|gb|AAK04082.1| RnhB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 197

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/188 (48%), Positives = 120/188 (63%), Gaps = 2/188 (1%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           K +  +AG+DEVGRG L G VV AA+ILDP+    G+NDSKK+S KKR  L E+I   A+
Sbjct: 7   KGVELIAGVDEVGRGPLVGAVVTAAVILDPHQPILGLNDSKKLSEKKRLLLAEEIKQKAL 66

Query: 81  I-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             S+  A  + ID+ NI  AT+ A+  AVENL++ P   L+DG  +PE L   A A++KG
Sbjct: 67  AWSLGRAEAEEIDQLNILHATMLAMKRAVENLKIQPHFVLVDGNRVPE-LMIPAQAIVKG 125

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D +   I+AASI+AKV RD+ M    K+YP+Y F  H GYPTA H   + E GP   HR 
Sbjct: 126 DGLVAEISAASILAKVARDQEMAELDKRYPEYAFAQHKGYPTALHLAKLAELGPLAQHRR 185

Query: 200 TFRPLRNL 207
           +F P+R L
Sbjct: 186 SFAPVRKL 193


>gi|77457342|ref|YP_346847.1| ribonuclease HII [Pseudomonas fluorescens Pf0-1]
 gi|97189197|sp|Q3KH98|RNH2_PSEPF RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|77381345|gb|ABA72858.1| ribonuclease HII [Pseudomonas fluorescens Pf0-1]
          Length = 213

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/196 (48%), Positives = 124/196 (63%), Gaps = 6/196 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F L A V E     VAG+DEVGRG L G VV AA+ILDPN    G+NDSKK++  KRE+L
Sbjct: 12  FTLVAEVEEL----VAGVDEVGRGPLCGAVVTAAVILDPNRPILGLNDSKKLTEAKREKL 67

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y++I   A+   I+ A  + ID+ NI  AT+ A+  AV  L + P+ A+IDG   P+ LP
Sbjct: 68  YDEICEKALSWCIARAEVEEIDELNILHATMLAMQRAVAGLHIQPKLAMIDGNRCPK-LP 126

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            ++ AV+KGDS   +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +  
Sbjct: 127 MRSEAVVKGDSKVPAIAAASILAKVSRDREMAAFELIYPGYGISGHKGYPTPVHLEALVR 186

Query: 191 KGPSCIHRLTFRPLRN 206
            GP+ IHR +F P+R 
Sbjct: 187 LGPTPIHRRSFAPVRQ 202


>gi|172060953|ref|YP_001808605.1| ribonuclease HII [Burkholderia ambifaria MC40-6]
 gi|238689161|sp|B1YS60|RNH2_BURA4 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|171993470|gb|ACB64389.1| Ribonuclease H [Burkholderia ambifaria MC40-6]
          Length = 217

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 89/182 (48%), Positives = 121/182 (66%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84
           V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKR+ LY+ I + A    ++
Sbjct: 28  VCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKALSAKKRDALYDLIVARASAFCVA 87

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS   ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  +A A++ GD++  
Sbjct: 88  SASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LTVRAEAIVSGDALVP 146

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI+AASI+AKVTRDR++   H+++P YGF+ HVGY T +H   ++E GP  +HR +F P+
Sbjct: 147 SISAASILAKVTRDRMLVDLHERFPVYGFNVHVGYSTPQHLAALREHGPCEVHRRSFAPV 206

Query: 205 RN 206
           R 
Sbjct: 207 RE 208


>gi|46446292|ref|YP_007657.1| ribonuclease HII [Candidatus Protochlamydia amoebophila UWE25]
 gi|81627372|sp|Q6MDG7|RNH2_PARUW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|46399933|emb|CAF23382.1| putative ribonuclease HII [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 222

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 89/185 (48%), Positives = 123/185 (66%), Gaps = 5/185 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII--SI 83
           +AGIDE GRG LAGPVV AA IL    +   INDSKK+S K RE L+E++T+ + +   I
Sbjct: 31  IAGIDEAGRGPLAGPVVAAACILPKGLLVPQINDSKKLSPKVRERLFERLTTDSAVRYGI 90

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSI 142
                  ID+ NI++AT+ A+  A++ L V P   L+DG ++P  DLPC    +IKGD +
Sbjct: 91  GIIGQAEIDRVNIYQATILAMLMAIQQLPVTPDYVLVDGMNLPHPDLPC--LKIIKGDQL 148

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           S SIAAASIIAK TRDRLM   H+++P YGF+ H GY T  H + + ++GP  IHR +F 
Sbjct: 149 SQSIAAASIIAKETRDRLMCQYHREWPGYGFNQHKGYATELHLEALFKQGPCPIHRRSFD 208

Query: 203 PLRNL 207
           P++++
Sbjct: 209 PIKSM 213


>gi|294793773|ref|ZP_06758910.1| ribonuclease HII [Veillonella sp. 3_1_44]
 gi|294455343|gb|EFG23715.1| ribonuclease HII [Veillonella sp. 3_1_44]
          Length = 279

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 86/197 (43%), Positives = 130/197 (65%), Gaps = 2/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           ++ E M  ++ ++ VAG+DEVGRG +AGPV VAA+IL P  +  G+NDSKK++ +KRE L
Sbjct: 77  YDYEGMFYDQGIYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREAL 136

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I   A+ +S      + ID+ NI++AT  A+Y A+  L V   + + D   +P DL 
Sbjct: 137 YDIIMDEAVAVSCIFYGPEKIDELNIYEATRQAMYEAIRTLSVPAEAVVADAMKLP-DLR 195

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGDS S +IAAAS+IAKVTRDR M+    +YP YGF  H GY T  H++ I++
Sbjct: 196 IPVESIIKGDSKSANIAAASVIAKVTRDRYMKSLDDEYPGYGFGIHKGYYTELHKEAIEQ 255

Query: 191 KGPSCIHRLTFRPLRNL 207
           +G + +HR +F P++++
Sbjct: 256 QGVTPLHRKSFEPIKSI 272


>gi|197286117|ref|YP_002151989.1| ribonuclease HII [Proteus mirabilis HI4320]
 gi|227357236|ref|ZP_03841593.1| ribonuclease HII [Proteus mirabilis ATCC 29906]
 gi|238690094|sp|B4F256|RNH2_PROMH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|194683604|emb|CAR44495.1| ribonuclease HII [Proteus mirabilis HI4320]
 gi|227162499|gb|EEI47488.1| ribonuclease HII [Proteus mirabilis ATCC 29906]
          Length = 196

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 90/181 (49%), Positives = 116/181 (64%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP N   G+ DSKK++ KKR  LY++I   A+  +I 
Sbjct: 11  IAGVDEVGRGPLVGAVVTAAVILDPANPIQGLMDSKKLTEKKRNALYDEIKEKALCWAIG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + IDK NI  AT+ A+  AV  L + P   L+DG   P +LP  + AVIKGDS+  
Sbjct: 71  RAEPEEIDKLNILWATMKAMERAVAGLSITPDMVLVDGNRCP-NLPMASQAVIKGDSLVQ 129

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M    K YPDYGF  H GYPTA H + +   G +  HR +F P+
Sbjct: 130 EISAASILAKVTRDREMEQLDKLYPDYGFAKHKGYPTAFHMEKLASLGATPYHRKSFAPV 189

Query: 205 R 205
           +
Sbjct: 190 K 190


>gi|212636263|ref|YP_002312788.1| ribonuclease HII [Shewanella piezotolerans WP3]
 gi|226736824|sp|B8CQ71|RNH2_SHEPW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|212557747|gb|ACJ30201.1| Ribonuclease H [Shewanella piezotolerans WP3]
          Length = 202

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 88/181 (48%), Positives = 119/181 (65%), Gaps = 2/181 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DEVGRG L G VV AA+ILDP+N   G+NDSKK+S KKRE L+ +I   A+ +S+ +
Sbjct: 21  AGVDEVGRGPLIGNVVTAAVILDPHNPIVGLNDSKKLSEKKRELLFNQIQEKALSVSVGA 80

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A+   ID+ NI  AT+ A+  AV  L + P S L+DG   P D   Q+ A+IKGD +  +
Sbjct: 81  ATPAEIDEINILHATMMAMQRAVAGLSIKPTSVLVDGNRCP-DFGMQSHAIIKGDGLIDA 139

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AKV RDR M     +YP+YGF+ H GYPT  H + + + G    HR +FRP+R
Sbjct: 140 ISAASIVAKVVRDREMEALAAQYPEYGFEKHKGYPTKAHFEALAKYGILAEHRKSFRPVR 199

Query: 206 N 206
            
Sbjct: 200 E 200


>gi|197336053|ref|YP_002156776.1| ribonuclease HII [Vibrio fischeri MJ11]
 gi|238690074|sp|B5F9W2|RNH2_VIBFM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|197317543|gb|ACH66990.1| ribonuclease HII [Vibrio fischeri MJ11]
          Length = 207

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 90/182 (49%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85
           AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK++ KKRE L+ +I   A+  S+  
Sbjct: 23  AGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTDKKRELLFPEIQEKALAWSLGR 82

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
                ID+ NI +AT+ A+  A+  L + P  ALIDG  +PE LP    AV+KGD     
Sbjct: 83  CEAHEIDELNILQATMVAMQRAIAGLNITPDFALIDGNKVPE-LPMAGLAVVKGDLRVQE 141

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASIIAKVTRDR M    K YP YGF  H GYPT  H + I+E G    HR +F+P++
Sbjct: 142 ISAASIIAKVTRDREMEELDKAYPQYGFAKHKGYPTKAHFEAIEEHGVISEHRRSFKPVK 201

Query: 206 NL 207
            +
Sbjct: 202 RV 203


>gi|59712555|ref|YP_205331.1| ribonuclease HII [Vibrio fischeri ES114]
 gi|73917836|sp|Q5E3F3|RNH2_VIBF1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|59480656|gb|AAW86443.1| ribonuclease HII [Vibrio fischeri ES114]
          Length = 207

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 90/182 (49%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85
           AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK++ KKRE L+ +I   A+  S+  
Sbjct: 23  AGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTDKKRELLFPEIQEKALAWSLGR 82

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
                ID+ NI +AT+ A+  A+  L + P  ALIDG  +PE LP    AV+KGD     
Sbjct: 83  CEAHEIDELNILQATMVAMQRAIAGLNITPDFALIDGNKVPE-LPMAGLAVVKGDLRVQE 141

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASIIAKVTRDR M    K YP YGF  H GYPT  H + I+E G    HR +F+P++
Sbjct: 142 ISAASIIAKVTRDREMEELDKAYPQYGFAKHKGYPTKAHFEAIEEHGVISEHRRSFKPVK 201

Query: 206 NL 207
            +
Sbjct: 202 RV 203


>gi|227903862|ref|ZP_04021667.1| ribonuclease HII [Lactobacillus acidophilus ATCC 4796]
 gi|227868253|gb|EEJ75674.1| ribonuclease HII [Lactobacillus acidophilus ATCC 4796]
          Length = 252

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 92/199 (46%), Positives = 126/199 (63%), Gaps = 7/199 (3%)

Query: 14  LEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           LE  + EK  W     VAG+DEVGRG LAGPVV AA+I+D +     +NDSKK+S +KR 
Sbjct: 54  LERFLYEKQFWQKGQLVAGVDEVGRGPLAGPVVTAAVIIDQDFDLLDVNDSKKLSPEKRL 113

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           +LY KI   A+ +++   + Q ID+ NI++A   A+  AV  L + P + L+D  ++P D
Sbjct: 114 KLYPKILEEAVSVAVGVKNAQVIDQINIYEADRQAMAQAVNALDIKPDALLVDAMNVPVD 173

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LP     +IKGD+ S SIAAASI+AKV RD+LM    K YP YGF  + GY T +H   +
Sbjct: 174 LP--QIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPHYGFSRNAGYGTKEHIDAL 231

Query: 189 KEKGPSCIHRLTFRPLRNL 207
           K+ GP+ IHR TF P+ + 
Sbjct: 232 KQYGPTHIHRKTFAPVSDF 250


>gi|114764188|ref|ZP_01443426.1| ribonuclease HII [Pelagibaca bermudensis HTCC2601]
 gi|114543340|gb|EAU46356.1| ribonuclease HII [Roseovarius sp. HTCC2601]
          Length = 215

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 89/182 (48%), Positives = 128/182 (70%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           VAG+DEVGRG LAGPVV AA++LDP  IP G+NDSKK+S K+R  L   +   A +SI  
Sbjct: 25  VAGVDEVGRGPLAGPVVAAAVVLDPLCIPPGLNDSKKLSAKRRARLAGWLHECAEVSIGV 84

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A+ + ID+ NI +A+L A++ AV  L+   + AL+DGR IP  LPC A  +IKGD  S+S
Sbjct: 85  ATVEEIDELNILQASLLAMHRAVTGLKRPAQHALVDGRFIPPQLPCHATPIIKGDGRSVS 144

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           IAAAS++AK  RDRLMR   +++P YG++++ GY + KH++ ++  G +  HR +F+P+ 
Sbjct: 145 IAAASVVAKCYRDRLMRDLAQQHPGYGWETNAGYGSKKHKEALQNLGVTPHHRRSFKPIH 204

Query: 206 NL 207
           N+
Sbjct: 205 NI 206


>gi|295426276|ref|ZP_06818936.1| ribonuclease HII [Lactobacillus amylolyticus DSM 11664]
 gi|295064015|gb|EFG54963.1| ribonuclease HII [Lactobacillus amylolyticus DSM 11664]
          Length = 251

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 96/199 (48%), Positives = 125/199 (62%), Gaps = 7/199 (3%)

Query: 14  LEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           LE    EK  W     VAG+DEVGRG LAGPVV AA+I+D +     +NDSKK+S +KR 
Sbjct: 53  LERFTYEKKFWQKGQIVAGVDEVGRGPLAGPVVTAAVIIDDHFDLLDVNDSKKLSPQKRL 112

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            LY KI S AI +++   S Q ID+ NI++A   A+  AV +L   P + L+D  ++P D
Sbjct: 113 ALYPKILSEAISVAVGVKSPQVIDQINIYEADRQAMAEAVLDLDQKPDALLVDAMNVPVD 172

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LP     +IKGD+ S SIAAASI+AKV RD+LM    K YP Y F  + GY TAKH   +
Sbjct: 173 LP--QVKLIKGDAKSNSIAAASIVAKVFRDKLMDDYAKIYPQYDFPDNAGYGTAKHLAAL 230

Query: 189 KEKGPSCIHRLTFRPLRNL 207
           K+ GP+ IHR TF P+ + 
Sbjct: 231 KKYGPTPIHRKTFAPVSDF 249


>gi|58337276|ref|YP_193861.1| ribonuclease HII [Lactobacillus acidophilus NCFM]
 gi|73917609|sp|Q5FKE4|RNH2_LACAC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|58254593|gb|AAV42830.1| Ribonuclease HII [Lactobacillus acidophilus NCFM]
          Length = 250

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 92/199 (46%), Positives = 126/199 (63%), Gaps = 7/199 (3%)

Query: 14  LEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           LE  + EK  W     VAG+DEVGRG LAGPVV AA+I+D +     +NDSKK+S +KR 
Sbjct: 52  LERFLYEKQFWQKGQLVAGVDEVGRGPLAGPVVTAAVIIDQDFDLLDVNDSKKLSPEKRL 111

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           +LY KI   A+ +++   + Q ID+ NI++A   A+  AV  L + P + L+D  ++P D
Sbjct: 112 KLYPKILEEAVSVAVGVKNAQVIDQINIYEADRQAMAQAVNALDIKPDALLVDAMNVPVD 171

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LP     +IKGD+ S SIAAASI+AKV RD+LM    K YP YGF  + GY T +H   +
Sbjct: 172 LP--QIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPHYGFSRNAGYGTKEHIDAL 229

Query: 189 KEKGPSCIHRLTFRPLRNL 207
           K+ GP+ IHR TF P+ + 
Sbjct: 230 KQYGPTHIHRKTFAPVSDF 248


>gi|209695837|ref|YP_002263767.1| ribonuclease HII [Aliivibrio salmonicida LFI1238]
 gi|238056773|sp|B6EJW6|RNH2_ALISL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|208009790|emb|CAQ80097.1| ribonuclease HII [Aliivibrio salmonicida LFI1238]
          Length = 207

 Score =  165 bits (417), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 117/182 (64%), Gaps = 2/182 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85
           AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK++ KKR+ L+ +I   A+  S+  
Sbjct: 23  AGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTEKKRDLLFPEIQEKALAWSLGR 82

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
                ID+ NI +AT+ A+  A+  L+V P  ALIDG  +PE LP    AV+KGD     
Sbjct: 83  CEAHEIDELNILQATMVAMQRAIAGLKVTPDFALIDGNKVPE-LPMAGLAVVKGDLRVQE 141

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AKVTRDR M +  K++P YGF  H GYPT  H   I+E G    HR +F+P++
Sbjct: 142 ISAASILAKVTRDREMEVLDKEFPQYGFAKHKGYPTKAHFAAIEEHGVISEHRRSFKPVK 201

Query: 206 NL 207
            +
Sbjct: 202 RV 203


>gi|160900366|ref|YP_001565948.1| ribonuclease HII [Delftia acidovorans SPH-1]
 gi|238687159|sp|A9BML8|RNH2_DELAS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|160365950|gb|ABX37563.1| Ribonuclease H [Delftia acidovorans SPH-1]
          Length = 235

 Score =  165 bits (417), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 91/180 (50%), Positives = 122/180 (67%), Gaps = 2/180 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DE GRG LAGPVV AA+ILD  N   G+NDSKK++  +RE LY++I + A+  SI+
Sbjct: 25  VAGVDEAGRGPLAGPVVAAAVILDDLNPIEGLNDSKKLTAARREALYDEIRAKALCCSIA 84

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID+ NI +ATL A+  AV  L++ P   L+DG  +P  L  QA A++KGDS+  
Sbjct: 85  EASVEEIDRLNILQATLLAMRRAVLGLRLKPVLVLVDGNQLPV-LDVQAEAIVKGDSLVQ 143

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKVTRDR     H++YP+YGFD H GY TA H   ++  G    HR TF P+
Sbjct: 144 AISAASILAKVTRDRWCERLHEQYPEYGFDGHKGYGTAAHLAALRLHGACEEHRRTFAPV 203


>gi|227551191|ref|ZP_03981240.1| ribonuclease H [Enterococcus faecium TX1330]
 gi|257887692|ref|ZP_05667345.1| ribonuclease HII [Enterococcus faecium 1,141,733]
 gi|257896186|ref|ZP_05675839.1| ribonuclease HII [Enterococcus faecium Com12]
 gi|293377187|ref|ZP_06623395.1| ribonuclease HII [Enterococcus faecium PC4.1]
 gi|227179659|gb|EEI60631.1| ribonuclease H [Enterococcus faecium TX1330]
 gi|257823746|gb|EEV50678.1| ribonuclease HII [Enterococcus faecium 1,141,733]
 gi|257832751|gb|EEV59172.1| ribonuclease HII [Enterococcus faecium Com12]
 gi|292644207|gb|EFF62309.1| ribonuclease HII [Enterococcus faecium PC4.1]
          Length = 255

 Score =  165 bits (417), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 96/207 (46%), Positives = 130/207 (62%), Gaps = 13/207 (6%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           MFC        FE +    + + W +AGIDEVGRG LAGPVV AA+IL  N I  G+NDS
Sbjct: 58  MFC--------FEKQGYA-QGHQW-IAGIDEVGRGPLAGPVVAAAVILPKNEIILGLNDS 107

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           K++S KKRE L ++I   A+ I I     Q ID+ NI++A+  A+  AVENL + P   L
Sbjct: 108 KQLSEKKRELLSQQIQEKALAIGIGIIDQQTIDEVNIYEASKLAMIQAVENLSIAPSYLL 167

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           ID  ++  DL  Q   +IKGD+ S+SIAAASIIAKV RD+LM+     YP YGF  + GY
Sbjct: 168 IDAMTL--DLSIQQEKIIKGDARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGY 225

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRN 206
            T +H + ++ +G + IHR +F P++ 
Sbjct: 226 GTKEHLEGLERQGITPIHRKSFAPVKK 252


>gi|85711419|ref|ZP_01042478.1| Ribonuclease HII [Idiomarina baltica OS145]
 gi|85694920|gb|EAQ32859.1| Ribonuclease HII [Idiomarina baltica OS145]
          Length = 188

 Score =  165 bits (417), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 90/182 (49%), Positives = 118/182 (64%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + G+DE GRG +AGPVV AA+ILDP     G+NDSKK+S KKRE L E+I + A+  SI+
Sbjct: 2   ICGVDEAGRGPIAGPVVAAAVILDPEQPIEGLNDSKKLSAKKRERLSEEIKAKALYWSIA 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            +    ID+ NI  A++ A+  AVE L   P   L+DG  +P DL   A AV+ GD+   
Sbjct: 62  QSDVDEIDQLNILWASMLAMKRAVEALPEAPTEVLVDGNRVP-DLVVPARAVVGGDASEP 120

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKV RDR M   H+ YP Y FD H  Y TA+H +++K  GP  IHR +FRP+
Sbjct: 121 TIAAASILAKVERDRQMLEWHQTYPQYEFDRHKAYGTARHLELLKLYGPCVIHRRSFRPV 180

Query: 205 RN 206
           R 
Sbjct: 181 RE 182


>gi|328544974|ref|YP_004305083.1| ribonuclease HII [polymorphum gilvum SL003B-26A1]
 gi|326414716|gb|ADZ71779.1| Ribonuclease HII [Polymorphum gilvum SL003B-26A1]
          Length = 219

 Score =  165 bits (417), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 90/201 (44%), Positives = 128/201 (63%), Gaps = 2/201 (0%)

Query: 6   IPERPHFELEAMVREKNMWP--VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           +P  P F+     R   ++   +AG+DE GRG  AGPVV AA++LD   +P G++DSK++
Sbjct: 12  LPFGPSFDATLEERHAALFGGRLAGVDEAGRGPWAGPVVTAAVVLDYRRLPAGLDDSKRL 71

Query: 64  SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
           S  +RE LYE+I +SA ++++SA    ID+ NI  ATL A+  AV+ L +     LIDGR
Sbjct: 72  SEVQREALYEEICASACVAVASACPTSIDRDNIRTATLAAMTRAVDALALTAGIVLIDGR 131

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +P  L  +  A++KGD   L++AAASI+AKVTRDR+MR+     P YGF +H GY    
Sbjct: 132 DVPPGLAGRGQALVKGDQRCLAVAAASIVAKVTRDRMMRLLDGCCPGYGFSAHKGYGVPA 191

Query: 184 HQQVIKEKGPSCIHRLTFRPL 204
           H Q +   GPS  HRL+F+P+
Sbjct: 192 HAQALLRLGPSPHHRLSFKPV 212


>gi|146281925|ref|YP_001172078.1| ribonuclease HII [Pseudomonas stutzeri A1501]
 gi|166226642|sp|A4VJT5|RNH2_PSEU5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|145570130|gb|ABP79236.1| ribonuclease HII [Pseudomonas stutzeri A1501]
 gi|327480168|gb|AEA83478.1| ribonuclease HII [Pseudomonas stutzeri DSM 4166]
          Length = 212

 Score =  165 bits (417), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 89/183 (48%), Positives = 119/183 (65%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L GPVV AA+ILDP     G+NDSKK++  +RE L+++I   A+   I+
Sbjct: 14  VAGVDEVGRGPLCGPVVTAAVILDPARPIEGLNDSKKLTEARREALFDEIREKAVAWCIA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AVE L V PR ALIDG   P+ L   +  VI+GD+   
Sbjct: 74  RAEVEEIDQLNILHATMLAMQRAVEGLSVTPRLALIDGNRCPQ-LAVPSAPVIQGDAQVP 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKV+RDR M+     YP YG   H GYPT  H + ++  GP+ IHR +F P+
Sbjct: 133 AIAAASILAKVSRDREMQALDLCYPGYGLAGHKGYPTPSHLEALRRLGPTPIHRRSFAPV 192

Query: 205 RNL 207
           R +
Sbjct: 193 RAM 195


>gi|126738666|ref|ZP_01754371.1| ribonuclease HII [Roseobacter sp. SK209-2-6]
 gi|126720465|gb|EBA17171.1| ribonuclease HII [Roseobacter sp. SK209-2-6]
          Length = 205

 Score =  165 bits (417), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 95/201 (47%), Positives = 128/201 (63%), Gaps = 2/201 (0%)

Query: 8   ERPHFELEAMVREKNMWP-VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           E+P   LE   R KN +P +AG+DEVGRG LAGPV  AA+IL     P G+NDSKK+S K
Sbjct: 2   EQPDDSLEQTAR-KNGYPRIAGVDEVGRGPLAGPVTAAAVILPLEGYPQGLNDSKKLSAK 60

Query: 67  KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           KR  L E+I  +A +SI+ AS + ID  NI KA+  A+  AV  L   P   LIDG  IP
Sbjct: 61  KRAVLAEEILQTAEVSIAEASVEEIDSINILKASHLAMERAVAALDPAPDYLLIDGNLIP 120

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             L   A AVIKGD  S+SIAAASI+AK  RD  M    +++P YG++ + GYP+ +H++
Sbjct: 121 AGLTIPAEAVIKGDGKSVSIAAASIVAKEARDECMVDLAQQFPGYGWEKNAGYPSKQHRE 180

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            ++E G +  HR +F+P+  +
Sbjct: 181 ALQELGVTPHHRKSFKPVHKI 201


>gi|332289941|ref|YP_004420793.1| ribonuclease HII [Gallibacterium anatis UMN179]
 gi|330432837|gb|AEC17896.1| ribonuclease HII [Gallibacterium anatis UMN179]
          Length = 197

 Score =  164 bits (416), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 89/186 (47%), Positives = 118/186 (63%), Gaps = 1/186 (0%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81
           N   +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S KKR+ L E+I   A+ 
Sbjct: 8   NAKLIAGVDEVGRGPLVGAVVTAAVILDPERPITGLADSKKLSEKKRQLLAEEIKEKALA 67

Query: 82  -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            S+  A    ID+ NI +AT+ A+  AV+ L + P   LIDG  IP  L   A AV+KGD
Sbjct: 68  WSLGRAEAAEIDRINILQATMLAMCRAVQGLHIQPDFVLIDGNRIPSALKIAAQAVVKGD 127

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S+   I+AASI+AKV RD+ M + H+KYP YGFD H GYPT  H + +++ G    HR +
Sbjct: 128 SLVAEISAASILAKVARDQEMLLLHQKYPQYGFDRHKGYPTKLHLEALEKYGILAEHRQS 187

Query: 201 FRPLRN 206
           F P++ 
Sbjct: 188 FAPVKK 193


>gi|149202924|ref|ZP_01879895.1| Ribonuclease H [Roseovarius sp. TM1035]
 gi|149143470|gb|EDM31506.1| Ribonuclease H [Roseovarius sp. TM1035]
          Length = 207

 Score =  164 bits (416), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 87/198 (43%), Positives = 126/198 (63%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E     +    +AG+DEVGRG LAGPV  AA+ILDP NIP G+NDSKK+S  +R 
Sbjct: 4   PDFTHERAALSEGYLRIAGVDEVGRGPLAGPVTAAAVILDPGNIPEGLNDSKKLSAARRA 63

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L E I +SA  S++ AS   ID+ NI +A   A+  A+  L   P   LIDG  IP  L
Sbjct: 64  ILCEAIHASAEASVAHASVAEIDQLNILRAAHLAMERAIAALDPQPDLVLIDGNLIPRGL 123

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              A A+++GD++S+SIAAASI+AK+ RD++M    +++P YG++ + GYP+  H++ + 
Sbjct: 124 TLPARAIVRGDAVSVSIAAASIVAKIRRDQIMWDLAQQFPGYGWERNAGYPSKSHREALL 183

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G +  HR +F+P+ N+
Sbjct: 184 NLGVTPHHRRSFKPVHNI 201


>gi|127513549|ref|YP_001094746.1| ribonuclease H [Shewanella loihica PV-4]
 gi|166226652|sp|A3QG89|RNH2_SHELP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|126638844|gb|ABO24487.1| RNase HII [Shewanella loihica PV-4]
          Length = 208

 Score =  164 bits (416), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 88/183 (48%), Positives = 119/183 (65%), Gaps = 3/183 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DEVGRG L G VV AA++LDPNN   G+NDSKK+S KKR+ LYE+I + A+ +S+  
Sbjct: 21  AGVDEVGRGPLVGDVVTAAVVLDPNNPIEGLNDSKKLSEKKRDALYEEILAKALDVSVGR 80

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143
            S   ID+ NI  AT+ A+  AV  L+  P   LIDG  +P+  D   +  AVIKGD + 
Sbjct: 81  CSPLEIDELNILHATMLAMQRAVAGLRARPDRVLIDGNRVPDFTDETLEGHAVIKGDGLI 140

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AKV RDR M    ++YP+YGF  H GYPT  H + ++  G    HR +FRP
Sbjct: 141 PAISAASIVAKVVRDREMEALDERYPEYGFAKHKGYPTKAHFEALEAHGVLAEHRKSFRP 200

Query: 204 LRN 206
           ++ 
Sbjct: 201 VKE 203


>gi|110677703|ref|YP_680710.1| ribonuclease HII [Roseobacter denitrificans OCh 114]
 gi|122973124|sp|Q16DB9|RNH2_ROSDO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|109453819|gb|ABG30024.1| ribonuclease HII [Roseobacter denitrificans OCh 114]
          Length = 198

 Score =  164 bits (415), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 83/182 (45%), Positives = 127/182 (69%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           VAG+DEVGRG LAGPV  AA++LDP NIP G+NDSK++S K+R  L + + SSA IS+  
Sbjct: 8   VAGVDEVGRGPLAGPVTAAAVVLDPANIPEGLNDSKQLSVKRRNLLGDALASSADISVGH 67

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           AS + I++HNI +A+  A+  A+  L++ P   LIDG  +P+ L  +A  V+KGD+  LS
Sbjct: 68  ASVEEIEQHNILRASHMAMLRALAGLRLRPDFVLIDGAMVPQGLNLRAQPVVKGDTRCLS 127

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASIIAK+ RD++M    +++P YG+++++GY +  H   ++  G +  HR TF+P+ 
Sbjct: 128 ISAASIIAKIARDKIMVDLAQQHPGYGWETNMGYGSKSHISALRNLGVTPHHRRTFKPVH 187

Query: 206 NL 207
           ++
Sbjct: 188 HM 189


>gi|282889844|ref|ZP_06298383.1| hypothetical protein pah_c004o257 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500418|gb|EFB42698.1| hypothetical protein pah_c004o257 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 232

 Score =  164 bits (415), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 90/196 (45%), Positives = 123/196 (62%), Gaps = 5/196 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E   R +    VAG+DE GRG LAGPVV AA IL P     G+NDSKK++ +KR +L+++
Sbjct: 29  EEKARRQGYKLVAGVDEAGRGPLAGPVVAAACILPPRFRVPGVNDSKKLTPQKRAQLFQE 88

Query: 75  ITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED-LPC 131
           IT+    I  +   + + ID  NI +AT+ A+  AV  L   P++ L+DG  +P   +PC
Sbjct: 89  ITTHPKVIYGVGIVATEIIDTINILQATIQAMLDAVNQLSSQPQALLVDGLQLPHPVIPC 148

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           Q    I GDS+SL IAAASIIAK TRDRLM    +++P YGF  H GY T +H   ++E 
Sbjct: 149 QKL--IHGDSLSLCIAAASIIAKETRDRLMVELDQQWPAYGFAQHKGYGTQQHLDALREH 206

Query: 192 GPSCIHRLTFRPLRNL 207
           GP  IHR TF P++++
Sbjct: 207 GPCPIHRKTFEPIKSM 222


>gi|115526417|ref|YP_783328.1| ribonuclease HII [Rhodopseudomonas palustris BisA53]
 gi|122294758|sp|Q07I86|RNH2_RHOP5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|115520364|gb|ABJ08348.1| RNase HII [Rhodopseudomonas palustris BisA53]
          Length = 278

 Score =  164 bits (415), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 1/195 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E  + ++ +WPVAG DE GRG LAGPVV AA++LDP  IP G++DSKK++ +KRE
Sbjct: 57  PSFRRERALLKRGIWPVAGCDEAGRGPLAGPVVAAAVVLDPKRIPKGLDDSKKLTAEKRE 116

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L+E+I ++A  +++ AS   I++ NI +A+L A+  AV+ L   P+   +DGR      
Sbjct: 117 ALFEEICATASFAVAYASPARIERDNILRASLWALARAVQALPEPPKHVFVDGRDK-IIT 175

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           PC   AVI GD++ LSIAAASIIAKV RDRLM    +  P YGFD H GY   +H   + 
Sbjct: 176 PCDCDAVIGGDALVLSIAAASIIAKVARDRLMCRLAEDCPGYGFDHHKGYGVPEHLAALD 235

Query: 190 EKGPSCIHRLTFRPL 204
             GP+  HR  F P+
Sbjct: 236 RLGPTKHHRKLFAPV 250


>gi|254247897|ref|ZP_04941218.1| Ribonuclease HII [Burkholderia cenocepacia PC184]
 gi|124872673|gb|EAY64389.1| Ribonuclease HII [Burkholderia cenocepacia PC184]
          Length = 214

 Score =  164 bits (415), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 91/181 (50%), Positives = 120/181 (66%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84
           V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKR+ LY+ I T S    ++
Sbjct: 28  VCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLDDSKVLSAKKRDALYDLIVTRSHAYCVA 87

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS   ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  +A A++ GD++  
Sbjct: 88  SASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LSVRAEAIVSGDALVP 146

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI+AASI+AKVTRDR++   H+++P YGF+ H GY TAKH   ++E GP   HR +F P+
Sbjct: 147 SISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAHRRSFAPV 206

Query: 205 R 205
           R
Sbjct: 207 R 207


>gi|170733361|ref|YP_001765308.1| ribonuclease HII [Burkholderia cenocepacia MC0-3]
 gi|238688549|sp|B1JUD6|RNH2_BURCC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|169816603|gb|ACA91186.1| Ribonuclease H [Burkholderia cenocepacia MC0-3]
          Length = 214

 Score =  164 bits (415), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 91/181 (50%), Positives = 120/181 (66%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84
           V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKR+ LY+ I T S    ++
Sbjct: 28  VCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLDDSKVLSAKKRDALYDLIVTRSHAYCVA 87

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS   ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  +A A++ GD++  
Sbjct: 88  SASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LSVRAEAIVSGDALVP 146

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI+AASI+AKVTRDR++   H+++P YGF+ H GY TAKH   ++E GP   HR +F P+
Sbjct: 147 SISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAHRRSFAPV 206

Query: 205 R 205
           R
Sbjct: 207 R 207


>gi|107028815|ref|YP_625910.1| ribonuclease HII [Burkholderia cenocepacia AU 1054]
 gi|116690026|ref|YP_835649.1| ribonuclease HII [Burkholderia cenocepacia HI2424]
 gi|122977720|sp|Q1BHG8|RNH2_BURCA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166225172|sp|A0K8C9|RNH2_BURCH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|105897979|gb|ABF80937.1| Ribonuclease H [Burkholderia cenocepacia AU 1054]
 gi|116648115|gb|ABK08756.1| Ribonuclease H [Burkholderia cenocepacia HI2424]
          Length = 214

 Score =  164 bits (415), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 91/181 (50%), Positives = 120/181 (66%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84
           V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKR+ LY+ I T S    ++
Sbjct: 28  VCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLDDSKVLSAKKRDALYDLIVTRSHAYCVA 87

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS   ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  +A A++ GD++  
Sbjct: 88  SASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LSVRAEAIVSGDALVP 146

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI+AASI+AKVTRDR++   H+++P YGF+ H GY TAKH   ++E GP   HR +F P+
Sbjct: 147 SISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAHRRSFAPV 206

Query: 205 R 205
           R
Sbjct: 207 R 207


>gi|311068127|ref|YP_003973050.1| ribonuclease HII [Bacillus atrophaeus 1942]
 gi|310868644|gb|ADP32119.1| ribonuclease HII [Bacillus atrophaeus 1942]
          Length = 255

 Score =  164 bits (415), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 88/193 (45%), Positives = 121/193 (62%), Gaps = 3/193 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E + R K    +AGIDEVGRG LAGPVV +A+IL       G+ DSKK+S KKREE YE+
Sbjct: 63  ERLARNKGFCIIAGIDEVGRGPLAGPVVASAVILPAECEILGLTDSKKLSEKKREEYYER 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I + A+ + I       ID+ NI++A+  A+  AV  L   P   L+D  ++P D+P   
Sbjct: 123 IMNEALGVGIGIIEASVIDEMNIYEASKLAMVKAVRELSEAPDYLLVDAMTLPLDIP--Q 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++IKGD+ S+SIAA + +AKVTRDR+M    K YP YGF+ H GY T +H + +   GP
Sbjct: 181 SSIIKGDAKSVSIAAGACVAKVTRDRMMSEYAKTYPMYGFEKHKGYGTKEHLEALAAYGP 240

Query: 194 SCIHRLTFRPLRN 206
           + IHR TF P++ 
Sbjct: 241 TDIHRRTFAPVQT 253


>gi|56698275|ref|YP_168648.1| ribonuclease HII [Ruegeria pomeroyi DSS-3]
 gi|81348925|sp|Q5LMW0|RNH2_SILPO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|56680012|gb|AAV96678.1| ribonuclease HII [Ruegeria pomeroyi DSS-3]
          Length = 234

 Score =  164 bits (415), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 92/194 (47%), Positives = 130/194 (67%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +P ++LEA +  +    +AG+DEVGRG LAGPVV AA++LDP  IP G+NDSKK++  +R
Sbjct: 32  QPDYQLEAALAAQGHIRIAGVDEVGRGPLAGPVVAAAVVLDPGAIPEGLNDSKKLTAARR 91

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           E LY+ + ++A +SI+ AS + ID  NI +A+  A+  AV  L   P   LIDG  IP  
Sbjct: 92  ERLYDILHANAQVSIAEASVEEIDALNILRASHLAMERAVAALNPAPDFLLIDGNLIPAG 151

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L C A AVIKGD  S+SIAAASI+AK  RDRLM    +++P YG++ + GYPT +H+  +
Sbjct: 152 LSCPAEAVIKGDGRSVSIAAASIVAKTWRDRLMVDLAQQHPGYGWERNAGYPTKEHRSAL 211

Query: 189 KEKGPSCIHRLTFR 202
           +  G +  HR +F+
Sbjct: 212 QNLGVTPHHRRSFK 225


>gi|298290630|ref|YP_003692569.1| ribonuclease H [Starkeya novella DSM 506]
 gi|296927141|gb|ADH87950.1| Ribonuclease H [Starkeya novella DSM 506]
          Length = 221

 Score =  164 bits (415), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 93/199 (46%), Positives = 124/199 (62%), Gaps = 1/199 (0%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           ++P F  E    +    PVAG+DEVGRG LAGPVV  A++LDP  +P G++DSKK++  +
Sbjct: 6   QKPDFSTERAAWKAGDVPVAGVDEVGRGPLAGPVVACAVVLDPKRVPKGLDDSKKLTAVQ 65

Query: 68  REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           RE L+E I ++A +S++ A    ID HNI +ATL A   AV  L   PR  L+DG   P 
Sbjct: 66  REALFEVICATAEVSLAFAPPARIDGHNIRQATLWAQAKAVAGLPCTPRLVLVDGND-PP 124

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            + C   A+I GD +  SIAAASI+AKVTRDRLM      +P YGF+ H+GY T +HQQ 
Sbjct: 125 PIGCAVRAIIGGDGLVASIAAASIVAKVTRDRLMASLGLAHPGYGFERHMGYSTPEHQQA 184

Query: 188 IKEKGPSCIHRLTFRPLRN 206
           +   G    HR +F P+R 
Sbjct: 185 LAALGACRHHRTSFAPVRE 203


>gi|171912710|ref|ZP_02928180.1| Ribonuclease H [Verrucomicrobium spinosum DSM 4136]
          Length = 233

 Score =  164 bits (415), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 88/202 (43%), Positives = 127/202 (62%), Gaps = 3/202 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           RP F  E  +R++    VAG+DE GRG LAGPV VAA+IL  +     ++DSK+++  +R
Sbjct: 27  RPTFRYEMELRQEGHQVVAGVDEAGRGPLAGPVSVAAVILPDDFTHAELHDSKQLTELRR 86

Query: 69  EELYEKITSSAIISISSASHQY--IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           E +Y+++   A +       +   ID+ NI +AT   +  AV+ L ++P + LIDG  +P
Sbjct: 87  ERIYDELMGRADVLWCHVMVEVDEIDRINILQATRMGMRRAVQGLSMLPHAVLIDGTPVP 146

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            D P    A++KGD++SLSIAAAS+IAKV RDRLMR A   YP YGFD H GY T +H +
Sbjct: 147 -DFPVPHRALVKGDALSLSIAAASVIAKVARDRLMRQAALDYPVYGFDQHKGYGTPEHLE 205

Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208
            ++  GP  +HR +F P+  L+
Sbjct: 206 ALRRHGPCPLHRRSFSPVSQLT 227


>gi|52424478|ref|YP_087615.1| ribonuclease HII [Mannheimia succiniciproducens MBEL55E]
 gi|81387520|sp|Q65VI0|RNH2_MANSM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|52306530|gb|AAU37030.1| RnhB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 198

 Score =  164 bits (415), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 91/183 (49%), Positives = 119/183 (65%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKRE+L E+I   A+  ++ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPNNPIDGLTDSKKLSEKKREKLAEEIKQKALAWALG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID  NI +AT+ A+  A++NL++ P   LIDG  IP+ L   A AV+KGDS+  
Sbjct: 73  RAEPEEIDALNILQATMLAMQRAIKNLKIQPHFVLIDGNRIPQ-LAIPAQAVVKGDSLVA 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKV+RD  M +  K+YP Y F  H GYPT  H   + E G    HR +F P+
Sbjct: 132 EISAASIIAKVSRDHEMEVLDKQYPQYEFAKHKGYPTKVHLAKLAEFGVLPQHRRSFSPV 191

Query: 205 RNL 207
           R L
Sbjct: 192 RKL 194


>gi|330959804|gb|EGH60064.1| putative ribonuclease HII [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 208

 Score =  164 bits (414), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 89/183 (48%), Positives = 118/183 (64%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L G VV AA+ILDP++   G+NDSKK+S KKR+ LY +I   A+  SI 
Sbjct: 14  VAGVDEVGRGPLCGDVVTAAVILDPSHPIQGLNDSKKLSEKKRDLLYAEICEKAVAWSIG 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A+   ID+ NI +AT+ A+  AV+ L V P   L+DG   P  LP +A A+IKGD +  
Sbjct: 74  RATVDEIDQLNILQATMLAMQRAVQGLSVTPTLVLVDGNRCPS-LPMRAEAIIKGDGLIA 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AAS++AKV RDR M+ A   YP YG   H GYP+  H + +   G + IHR TF P+
Sbjct: 133 EISAASVLAKVVRDREMQSADLLYPGYGIAGHKGYPSPVHLEALSRLGATAIHRKTFGPV 192

Query: 205 RNL 207
           R +
Sbjct: 193 RKI 195


>gi|325519162|gb|EGC98633.1| ribonuclease HII [Burkholderia sp. TJI49]
          Length = 214

 Score =  164 bits (414), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 89/182 (48%), Positives = 120/182 (65%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKR+ LYE I + ++   ++
Sbjct: 28  VCGVDEAGRGPLAGPVVAAAVILDPAQPIEGLDDSKALSAKKRDALYELIIARSVSYCVA 87

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS   ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  +A A++ GD++  
Sbjct: 88  SASVDEIDTLNILHATMLAMKRAVEGLAVLPTLAQIDGNRCPT-LSVRAEAIVSGDALVP 146

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI+AASI+AKVTRDR++   H+++P YGF+ H GY T KH   ++E GP   HR +F P+
Sbjct: 147 SISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTPKHLAALREHGPCEAHRRSFAPV 206

Query: 205 RN 206
           R 
Sbjct: 207 RE 208


>gi|167032173|ref|YP_001667404.1| ribonuclease HII [Pseudomonas putida GB-1]
 gi|189043642|sp|B0KSB3|RNH2_PSEPG RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166858661|gb|ABY97068.1| Ribonuclease H [Pseudomonas putida GB-1]
          Length = 207

 Score =  164 bits (414), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 90/181 (49%), Positives = 116/181 (64%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  KRE L+++I   A+   I+
Sbjct: 14  VAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEAKREALFDEICEKALSFCIA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI +AT+ A+  AVE L + P+ ALIDG   P+ L   A  V+KGDS   
Sbjct: 74  RAEVEEIDRLNILQATMLAMQRAVEGLHITPKLALIDGNRCPK-LAVPASPVVKGDSQVP 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKVTRDR M      YP YG   H GYPT  H + +   GP+ IHR +F P+
Sbjct: 133 AIAAASILAKVTRDREMSAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 192

Query: 205 R 205
           R
Sbjct: 193 R 193


>gi|325278078|ref|ZP_08143597.1| ribonuclease HII [Pseudomonas sp. TJI-51]
 gi|324096785|gb|EGB95112.1| ribonuclease HII [Pseudomonas sp. TJI-51]
          Length = 207

 Score =  164 bits (414), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 90/181 (49%), Positives = 116/181 (64%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  KRE L+++I   A+   I+
Sbjct: 14  VAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTQAKREALFDEICEKALSFCIA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI +AT+ A+  AVE L V P+ ALIDG   P+ L   A  V+KGDS   
Sbjct: 74  RAEVEEIDRLNILQATMLAMQRAVEGLHVTPKLALIDGNRCPK-LSVPAAPVVKGDSQVP 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P+
Sbjct: 133 AIAAASILAKVSRDREMSAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 192

Query: 205 R 205
           R
Sbjct: 193 R 193


>gi|146344062|ref|YP_001201918.1| putative ribonuclease HII [Pseudomonas fluorescens SBW25]
 gi|146187874|emb|CAM96203.1| putative ribonuclease HII [Pseudomonas fluorescens SBW25]
          Length = 208

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 91/183 (49%), Positives = 119/183 (65%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L G VV AA+ILDP+    G+NDSKK+S KKR+ LY++I   A+  SI 
Sbjct: 14  VAGVDEVGRGPLCGDVVTAAVILDPSRPIQGLNDSKKLSEKKRDLLYDEICEKALAWSIG 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID+ NI +AT+ A+  AV  L V P   LIDG   P  LP +A A+IKGD +  
Sbjct: 74  RASVEEIDQLNILQATMLAMQRAVYGLNVTPTLVLIDGNRCP-ILPMRAEAIIKGDGLIA 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AAS++AKV RDR M+ A   YP YG   H GYP+ +H + +   G + IHR TF P+
Sbjct: 133 EISAASVLAKVVRDREMQSADLLYPGYGLAGHKGYPSPEHLEALTRLGVTPIHRKTFAPV 192

Query: 205 RNL 207
           R +
Sbjct: 193 RKI 195


>gi|238026917|ref|YP_002911148.1| ribonuclease HII [Burkholderia glumae BGR1]
 gi|237876111|gb|ACR28444.1| Ribonuclease HII [Burkholderia glumae BGR1]
          Length = 215

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 92/181 (50%), Positives = 117/181 (64%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84
           V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKRE LY +I   A    ++
Sbjct: 29  VCGVDEAGRGPLAGPVVAAAVILDPARPIVGLDDSKALSAKKRERLYAEIVERAQAYCVA 88

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS + ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  ++ A+I GD++  
Sbjct: 89  SASVEEIDTLNILHATMLAMKRAVEGLAVLPTLAQIDGNRCPT-LAIRSEAIIGGDALVP 147

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI+AASI+AKVTRDRL+   H  +P YGFD H GY T KH   ++E GP   HR +F P+
Sbjct: 148 SISAASILAKVTRDRLLVDLHASFPLYGFDVHSGYGTPKHLAALREHGPCEHHRRSFAPV 207

Query: 205 R 205
           R
Sbjct: 208 R 208


>gi|144899371|emb|CAM76235.1| Ribonuclease HII [Magnetospirillum gryphiswaldense MSR-1]
          Length = 201

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/188 (50%), Positives = 118/188 (62%), Gaps = 5/188 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYEKITSSAII 81
           VAGIDEVGRG LAGPVV AAII+DP  +P  +    +DSKK+S KKRE L   I      
Sbjct: 14  VAGIDEVGRGPLAGPVVAAAIIIDPATLPAELAAHLDDSKKLSAKKREHLDILIRQHCRF 73

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           +I+ AS + ID+ NI KAT  A+  AV+ L  +P  AL+DG   P  LPC A  VI GD+
Sbjct: 74  AIAQASVEEIDRLNILKATFLAMARAVDGLGTVPDHALVDGNR-PPPLPCPAHCVIGGDA 132

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            SLSIAAASIIAKV RDRLM      +P YG+ ++ GY T  H + +K  GP+  HR +F
Sbjct: 133 KSLSIAAASIIAKVFRDRLMTALDLDFPGYGWAANAGYGTKAHMEALKRLGPTPHHRTSF 192

Query: 202 RPLRNLSV 209
            P+    +
Sbjct: 193 APVAQFQL 200


>gi|229588817|ref|YP_002870936.1| ribonuclease HII [Pseudomonas fluorescens SBW25]
 gi|229360683|emb|CAY47541.1| ribonuclease HII [Pseudomonas fluorescens SBW25]
          Length = 206

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 89/182 (48%), Positives = 118/182 (64%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDPN    G+NDSKK++  +RE+LY++I   A+   I+
Sbjct: 15  VAGVDEVGRGPLCGAVVTAAVILDPNRPILGLNDSKKLTEARREKLYDEICEKALSWHIA 74

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AVE L + P+ A+IDG   P+ L   + AV+KGDS   
Sbjct: 75  RAEVEEIDELNILHATMLAMQRAVEGLHITPKMAMIDGNRCPK-LAMPSEAVVKGDSKVP 133

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P+
Sbjct: 134 AIAAASILAKVSRDREMAAFELIYPGYGMGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 193

Query: 205 RN 206
           R 
Sbjct: 194 RE 195


>gi|237808842|ref|YP_002893282.1| Ribonuclease H [Tolumonas auensis DSM 9187]
 gi|237501103|gb|ACQ93696.1| Ribonuclease H [Tolumonas auensis DSM 9187]
          Length = 197

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/182 (49%), Positives = 116/182 (63%), Gaps = 4/182 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+NDSKK+S KKRE L++ I  + +  +I 
Sbjct: 12  IAGVDEVGRGPLIGDVVTAAVILDPARPITGLNDSKKLSEKKREALFDIIRENVLAFAIG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
             S   ID+ NI +AT+ A+  AV  L V P   LIDG   P   +P QA  V+KGDS+ 
Sbjct: 72  RCSAAEIDQFNILQATMKAMQRAVAGLSVQPEFVLIDGNRCPALSMPSQA--VVKGDSLV 129

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M    + YP YGF  H GYPTA+H   + E G   IHR +F+P
Sbjct: 130 AEISAASILAKVTRDREMAELDQLYPQYGFAQHKGYPTAQHLAALAEHGALAIHRRSFKP 189

Query: 204 LR 205
           ++
Sbjct: 190 VK 191


>gi|161524444|ref|YP_001579456.1| ribonuclease HII [Burkholderia multivorans ATCC 17616]
 gi|189350801|ref|YP_001946429.1| ribonuclease HII [Burkholderia multivorans ATCC 17616]
 gi|221198308|ref|ZP_03571354.1| ribonuclease HII [Burkholderia multivorans CGD2M]
 gi|221208247|ref|ZP_03581251.1| ribonuclease HII [Burkholderia multivorans CGD2]
 gi|221215471|ref|ZP_03588435.1| ribonuclease HII [Burkholderia multivorans CGD1]
 gi|160341873|gb|ABX14959.1| Ribonuclease H [Burkholderia multivorans ATCC 17616]
 gi|189334823|dbj|BAG43893.1| ribonuclease H [Burkholderia multivorans ATCC 17616]
 gi|221164655|gb|EED97137.1| ribonuclease HII [Burkholderia multivorans CGD1]
 gi|221171895|gb|EEE04338.1| ribonuclease HII [Burkholderia multivorans CGD2]
 gi|221182240|gb|EEE14641.1| ribonuclease HII [Burkholderia multivorans CGD2M]
          Length = 210

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/182 (49%), Positives = 120/182 (65%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84
           V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKR+ LYE I S+A    ++
Sbjct: 24  VCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKVLSAKKRDALYELIVSNARAYCVA 83

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS   ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  +A A++ GD++  
Sbjct: 84  SASVDEIDSLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LSVRAEAIVSGDALVP 142

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI+AASI+AKVTRDR++   H+++P YGF+ H GY T +H   ++E GP   HR +F P+
Sbjct: 143 SISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTPQHLAALREHGPCEAHRRSFAPV 202

Query: 205 RN 206
           R 
Sbjct: 203 RE 204


>gi|237745609|ref|ZP_04576089.1| ribonuclease HII [Oxalobacter formigenes HOxBLS]
 gi|229376960|gb|EEO27051.1| ribonuclease HII [Oxalobacter formigenes HOxBLS]
          Length = 218

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/183 (46%), Positives = 118/183 (64%), Gaps = 1/183 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84
           + G DE GRG +AGPV  AA+ILDP+    G+ DSKK+S  +R+EL  +I   A   SI+
Sbjct: 28  ICGADEAGRGPIAGPVFAAAVILDPDRPVNGLRDSKKLSESRRDELALEIKKKAKAWSIA 87

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S   ID+ NI  A++ A+  A+E L V+P  AL+DG   P DL  +A A++KGD    
Sbjct: 88  QCSVAEIDELNILWASMLAMKRAIETLSVLPELALVDGNRYPRDLSVRAEAIVKGDDRVP 147

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AK  RD +MR  H++YP YGFD H GYPTA H   +K+ G S +HR T+ P+
Sbjct: 148 AISAASILAKTARDAVMRELHRQYPAYGFDRHKGYPTAFHLAQLKKYGVSPVHRRTYAPV 207

Query: 205 RNL 207
           R +
Sbjct: 208 RKI 210


>gi|312959406|ref|ZP_07773923.1| ribonuclease HII [Pseudomonas fluorescens WH6]
 gi|311286123|gb|EFQ64687.1| ribonuclease HII [Pseudomonas fluorescens WH6]
          Length = 210

 Score =  163 bits (412), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 89/182 (48%), Positives = 118/182 (64%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDPN    G+NDSKK++  +RE+LY++I   A+   I+
Sbjct: 19  VAGVDEVGRGPLCGAVVTAAVILDPNRPILGLNDSKKLTEARREKLYDEICEKALSWHIA 78

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AVE L + P+ A+IDG   P+ L   + AV+KGDS   
Sbjct: 79  RAEVEEIDQLNILHATMLAMQRAVEGLHITPKMAMIDGNRCPK-LAMPSEAVVKGDSKVP 137

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P+
Sbjct: 138 AIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 197

Query: 205 RN 206
           R 
Sbjct: 198 RQ 199


>gi|84515024|ref|ZP_01002387.1| ribonuclease HII [Loktanella vestfoldensis SKA53]
 gi|84511183|gb|EAQ07637.1| ribonuclease HII [Loktanella vestfoldensis SKA53]
          Length = 210

 Score =  163 bits (412), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/198 (44%), Positives = 126/198 (63%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E     +    +AG+DEVGRG LAGPVV AA++LDP  +P G+NDSKK++  +RE
Sbjct: 4   PDFSFEDTAHGRGHLRIAGVDEVGRGPLAGPVVAAAVVLDPARLPAGLNDSKKLTLDRRE 63

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L+ +I  SA +SI+ AS   ID HNI +A+  A+  A+  L   P   LIDG  +P  L
Sbjct: 64  ALFSQIMDSADVSIAQASVAEIDSHNILRASHLAMLRAIAGLATPPDHVLIDGNMVPRGL 123

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              +  ++KGD+ SLSIAAASI+AKV RDR M    +++P YG++++ GYPT  H+  + 
Sbjct: 124 TLSSETIVKGDARSLSIAAASIVAKVWRDRHMVDLAQQFPGYGWEANAGYPTPAHKLALV 183

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G +  HR +F+P+ N+
Sbjct: 184 TLGVTPHHRRSFKPVHNI 201


>gi|254452091|ref|ZP_05065528.1| ribonuclease HII [Octadecabacter antarcticus 238]
 gi|198266497|gb|EDY90767.1| ribonuclease HII [Octadecabacter antarcticus 238]
          Length = 209

 Score =  163 bits (412), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 91/198 (45%), Positives = 126/198 (63%), Gaps = 1/198 (0%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           P  P F  E  +  +    +AG+DEVGRG LAGPV  AA+ILDP NIP G+NDSK +S K
Sbjct: 9   PSGPDFTFEEDLISRGAICIAGVDEVGRGPLAGPVTAAAVILDPANIPDGLNDSKMLSRK 68

Query: 67  KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           KRE L   I ++A +SI+ A+ + ID+ NI +A+  A+  A+  L  +   ALIDG  IP
Sbjct: 69  KREALEPLIFANAEVSIAHATVEEIDEINILRASHLAMERAIAGLGRVDH-ALIDGNMIP 127

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             L   A  +IKGD+ SLSIAAASI+AK+ RDR+M    ++YP YG+D++ GY +  H  
Sbjct: 128 RGLIIPATTIIKGDARSLSIAAASIVAKICRDRIMVGLAQQYPGYGWDTNAGYGSKSHIS 187

Query: 187 VIKEKGPSCIHRLTFRPL 204
            +   G +  HR +F+P+
Sbjct: 188 ALHRLGVTPHHRRSFKPV 205


>gi|87118612|ref|ZP_01074511.1| ribonuclease HII [Marinomonas sp. MED121]
 gi|86166246|gb|EAQ67512.1| ribonuclease HII [Marinomonas sp. MED121]
          Length = 214

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 119/182 (65%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG VV AA+ILDPNN    + DSKK+S KKR  L+++I   A+   I+ 
Sbjct: 28  AGSDEAGRGPLAGDVVAAAVILDPNNPIASLADSKKLSEKKRVALFDEIKEKALAFCIAR 87

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           AS   ID+ NI  A++ A+  A+  L+V P  ALIDG  IP+DLPC A AV+KGD    +
Sbjct: 88  ASVAEIDELNILHASMLAMQRAISGLRVTPEHALIDGNRIPKDLPCPAEAVVKGDDRVEA 147

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AKV RD  +    ++YP YG + H GYPTA+H   ++  G + IHR +F P++
Sbjct: 148 ISAASILAKVERDNEISALAERYPGYGLEKHKGYPTAQHLAALETLGVTPIHRQSFGPVK 207

Query: 206 NL 207
            +
Sbjct: 208 RI 209


>gi|94500636|ref|ZP_01307166.1| ribonuclease HII [Oceanobacter sp. RED65]
 gi|94427191|gb|EAT12171.1| ribonuclease HII [Oceanobacter sp. RED65]
          Length = 222

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 89/207 (42%), Positives = 128/207 (61%), Gaps = 8/207 (3%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           ++  F+LE  +++  +    G+DE G G L G VV AA+ILDPNN    +NDSKK+S KK
Sbjct: 9   QQAWFQLEQSLKQSGIL-YCGVDEAGAGPLCGDVVAAAVILDPNNPIDSLNDSKKLSEKK 67

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALI 120
           RE L+ +I   A+   I+  + Q ID+ NI +A + A+  AV+ L+       +P  A I
Sbjct: 68  REALFPEIKEKALAYCIARCTPQEIDEINILQARMLAMTRAVKGLRDQNGEICLPEHAFI 127

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG  +P+ LPCQA  V+KGD++  +I+AAS++AKV RD  M    K YP Y    H GYP
Sbjct: 128 DGNRLPQGLPCQATPVVKGDALVAAISAASVLAKVQRDHDMVELDKHYPGYELAKHKGYP 187

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           T  H Q++KE GP+ I+R +F P++ L
Sbjct: 188 TKAHLQLLKENGPTDIYRKSFGPVKAL 214


>gi|254440277|ref|ZP_05053771.1| ribonuclease HII [Octadecabacter antarcticus 307]
 gi|198255723|gb|EDY80037.1| ribonuclease HII [Octadecabacter antarcticus 307]
          Length = 206

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 92/201 (45%), Positives = 129/201 (64%), Gaps = 3/201 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E  +  + +  +AG+DEVGRG LAGPV  AA+ILDP NIP G+NDSK +S KKRE
Sbjct: 5   PDFTFEQDLFARGILRIAGVDEVGRGPLAGPVTAAAVILDPANIPDGLNDSKALSRKKRE 64

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQV-IPR--SALIDGRSIP 126
            L   I +SA +SI+ A+ + ID+ NI +A+  A+  A+  L   + R   ALIDG  +P
Sbjct: 65  LLEPLIFASAEVSIAHATVEEIDEINILRASHLAMERAIAGLGAGLNRVDHALIDGNMVP 124

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             L   A  +IKGD+ SLSIAAASI+AK+ RDR+M    + YP YG+D++ GY +  H  
Sbjct: 125 RGLIIPATTIIKGDARSLSIAAASIVAKICRDRIMVELAQHYPGYGWDTNAGYGSKSHIS 184

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            ++  G +  HR +F+P+ N+
Sbjct: 185 ALQNIGVTPHHRRSFKPVHNM 205


>gi|254485800|ref|ZP_05099005.1| ribonuclease HII [Roseobacter sp. GAI101]
 gi|214042669|gb|EEB83307.1| ribonuclease HII [Roseobacter sp. GAI101]
          Length = 205

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 84/198 (42%), Positives = 130/198 (65%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P FE E     +    VAG+DEVGRG LAGPV  AA++LDP  IP G+NDSKK++ + RE
Sbjct: 3   PDFEFERDAYARGFARVAGVDEVGRGPLAGPVTAAAVVLDPARIPEGLNDSKKLTKRARE 62

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            LY++I + A +SI+ AS + I++ NI +A+  A+  A++ L+     ALIDG  +P DL
Sbjct: 63  RLYDEIMAVADVSIAHASVEEIEELNILRASHLAMVRALDGLRTPADFALIDGNMVPRDL 122

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             ++  VIKGD+ S SI+AASI+AK+ RD +M    +++P YG+++++GY +  H + ++
Sbjct: 123 AIKSQTVIKGDARSQSISAASIMAKICRDCVMLSLAQQHPGYGWETNMGYGSKSHIEALQ 182

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G +  HR  F+P+  +
Sbjct: 183 NLGVTPHHRRLFKPVHKM 200


>gi|330722242|gb|EGH00125.1| Ribonuclease HII [gamma proteobacterium IMCC2047]
          Length = 203

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 92/183 (50%), Positives = 118/183 (64%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG LAGPVV AA+IL+P N   G+ DSKK++ K+RE L+  I   A+   I+
Sbjct: 12  VAGVDEVGRGPLAGPVVAAAVILNPANPIEGLADSKKLTEKRREALFPLIQERALAWCIA 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID+ NI  A+L A+  AV  L   P   L+DG   P DLP  + A+IKGDS   
Sbjct: 72  RASEAEIDRLNILHASLLAMRRAVLGLSQQPDRVLVDGNRCP-DLPYPSEAIIKGDSKIE 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKV RD  M    + YP YGF  H GYPTA+H Q +K  G + IHR +F P+
Sbjct: 131 AISAASILAKVVRDNEMVAFEETYPGYGFAKHKGYPTAQHMQALKTLGVTPIHRRSFAPV 190

Query: 205 RNL 207
           +NL
Sbjct: 191 KNL 193


>gi|289167905|ref|YP_003446174.1| ribonuclease HII [Streptococcus mitis B6]
 gi|288907472|emb|CBJ22309.1| ribonuclease HII [Streptococcus mitis B6]
          Length = 259

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/203 (45%), Positives = 132/203 (65%), Gaps = 9/203 (4%)

Query: 12  FELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           F LE+M+  EK ++      VAG+DEVGRG LAGPVV AA+IL  N    G+NDSKKI  
Sbjct: 52  FRLESMLSYEKELYKQGLTLVAGVDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPK 111

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KK  E+++ + + A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID   
Sbjct: 112 KKHLEIFQAVQNQALSIGIGIMDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMK 171

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +  DLP    ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAKH
Sbjct: 172 L--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEFDQQFPGYDFATNAGYGTAKH 229

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
            + +++ G + IHR +F P+++L
Sbjct: 230 LEGLEKLGVTPIHRTSFEPVKSL 252


>gi|330817425|ref|YP_004361130.1| Ribonuclease HII [Burkholderia gladioli BSR3]
 gi|327369818|gb|AEA61174.1| Ribonuclease HII [Burkholderia gladioli BSR3]
          Length = 217

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 91/182 (50%), Positives = 118/182 (64%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS-SAIISIS 84
           V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKRE LY +I + S    ++
Sbjct: 31  VCGVDEAGRGPLAGPVVAAAVILDPARPILGLDDSKALSAKKRELLYHEIVAHSRAWCVA 90

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS + ID  NI  AT+ A+  AVE L ++P  A IDG   P  L  ++ A++ GD++  
Sbjct: 91  SASVEEIDTLNILHATMLAMRRAVEGLSLLPTLAKIDGNRCPT-LGIRSEAIVGGDALVP 149

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI+AASIIAKVTRDRL+   H  +P YGFD H GY T KH   ++E GP   HR +F P+
Sbjct: 150 SISAASIIAKVTRDRLLVDLHATFPHYGFDVHAGYGTPKHLAALREHGPCEHHRRSFAPV 209

Query: 205 RN 206
           R 
Sbjct: 210 RE 211


>gi|163750365|ref|ZP_02157605.1| ribonuclease HII [Shewanella benthica KT99]
 gi|161329855|gb|EDQ00841.1| ribonuclease HII [Shewanella benthica KT99]
          Length = 218

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 120/188 (63%), Gaps = 8/188 (4%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DEVGRG L G VV AA+ILDP N   G+NDSKK++ KKRE L+ +I   A+ IS+  
Sbjct: 21  AGVDEVGRGPLVGNVVTAAVILDPKNPILGLNDSKKLTEKKREALFTEIHEKALSISVGH 80

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-------EDLPCQAFAVIK 138
           A+ + ID+ NI  AT+ A+  AV  L++ P   L+DG   P        +L  +A A++K
Sbjct: 81  ATPEEIDELNILHATMLAMQRAVAGLEIKPVKVLVDGNRAPIFHHGDNTELALEAHAIVK 140

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD +   I+AASI+AKV RDR M++   ++P YGF  H GYPT  H Q +++ G    HR
Sbjct: 141 GDGLIAGISAASIVAKVIRDREMKLLDMEHPQYGFAKHKGYPTQAHFQALEQHGVLAEHR 200

Query: 199 LTFRPLRN 206
            +FRP+R+
Sbjct: 201 KSFRPVRD 208


>gi|134296014|ref|YP_001119749.1| ribonuclease HII [Burkholderia vietnamiensis G4]
 gi|166225178|sp|A4JF61|RNH2_BURVG RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|134139171|gb|ABO54914.1| Ribonuclease H [Burkholderia vietnamiensis G4]
          Length = 216

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/181 (49%), Positives = 119/181 (65%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS-SAIISIS 84
           V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKR+ LY+ I + S    ++
Sbjct: 30  VCGVDEAGRGPLAGPVVAAAVILDPAQPIEGLDDSKALSAKKRDALYDLIVARSRAYCVA 89

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS   ID  NI  AT+ A+  AVE L ++P  A IDG   P  L  +A A++ GD++  
Sbjct: 90  SASVDEIDTLNILHATMLAMKRAVEGLSLMPTLAQIDGNRCPT-LMVRAEAIVSGDALVP 148

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI+AASI+AKVTRDR++   H ++P YGFD H GY TAKH   ++E GP   HR +F P+
Sbjct: 149 SISAASILAKVTRDRMLVELHARHPVYGFDVHAGYGTAKHLAALREHGPCEAHRRSFAPV 208

Query: 205 R 205
           R
Sbjct: 209 R 209


>gi|294648443|ref|ZP_06725932.1| ribonuclease HII [Acinetobacter haemolyticus ATCC 19194]
 gi|292825668|gb|EFF84382.1| ribonuclease HII [Acinetobacter haemolyticus ATCC 19194]
          Length = 200

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 124/192 (64%), Gaps = 6/192 (3%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76
           +V   NM  +AG+DE GRG L G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I 
Sbjct: 7   LVERCNM-TIAGVDEAGRGPLVGSVVAAAVILDPNNPIEGLNDSKKLTEKKREKLFAEIQ 65

Query: 77  SSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQA 133
             A+  SI+ ASH  ID+ NI +AT  A+  AVE L   P   ++DG  IP+  ++PC+A
Sbjct: 66  EKALAWSIAEASHVEIDEFNILQATFLAMRRAVEALATQPAKVIVDGNQIPKGINIPCEA 125

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             ++ GD+    I+AASI+AKVTRDR M+    +YP+YGF  H GYPT  H + I   G 
Sbjct: 126 --IVGGDATHAEISAASILAKVTRDRQMKALDLEYPNYGFAKHKGYPTKAHFEAIAIHGV 183

Query: 194 SCIHRLTFRPLR 205
              HR ++ P++
Sbjct: 184 IDEHRRSYGPVK 195


>gi|322385535|ref|ZP_08059179.1| ribonuclease HII [Streptococcus cristatus ATCC 51100]
 gi|321270273|gb|EFX53189.1| ribonuclease HII [Streptococcus cristatus ATCC 51100]
          Length = 254

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 94/203 (46%), Positives = 129/203 (63%), Gaps = 9/203 (4%)

Query: 12  FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
             LE M+R EK ++      +AGIDEVGRG LAGPVV AA+IL PN    G+NDSKKI  
Sbjct: 52  LRLEYMLRYEKELYSQGFQALAGIDEVGRGPLAGPVVAAAVILPPNCKIKGLNDSKKIPK 111

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KK EE+Y+ +   A+ + +    +Q ID+ NI++AT  A+  AV  L++ P   LID   
Sbjct: 112 KKHEEIYQAVLDHALAVGLGIMDNQTIDRVNIYEATKLAMLEAVAQLKIKPDYLLIDAMK 171

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +   LP Q+  +IKGD+ SLSIAAASI+AKVTRD++M    + YP Y F  + GY T  H
Sbjct: 172 LDLSLPQQS--IIKGDANSLSIAAASIVAKVTRDKMMADFDQIYPGYDFAQNAGYGTKSH 229

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
            Q ++  G + IHR TF P++++
Sbjct: 230 LQGLERNGVTPIHRKTFEPVKSM 252


>gi|307729345|ref|YP_003906569.1| Ribonuclease H [Burkholderia sp. CCGE1003]
 gi|307583880|gb|ADN57278.1| Ribonuclease H [Burkholderia sp. CCGE1003]
          Length = 271

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 89/183 (48%), Positives = 121/183 (66%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAII-SI 83
           V G+DE GRG LAGPVV AA+I DP+  +  G++DSK ++ KKR+ELYEKI   A+   I
Sbjct: 46  VCGVDEAGRGPLAGPVVAAAVIFDPSKPMIRGLDDSKALTAKKRDELYEKIVDRALAYCI 105

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SA+ + ID  NI  AT+ A+  AVE L V P    +DG   P  L  ++ AVI GD++ 
Sbjct: 106 ASATVEEIDSLNILHATMLAMKRAVEGLSVTPTLVKVDGNRCPT-LSVRSEAVIGGDALV 164

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+ YP YGF++H GY T +H   ++E GP   HR +F P
Sbjct: 165 KSISAASILAKVTRDRMLLELHQTYPMYGFNAHAGYGTPQHLAALREHGPCEHHRRSFAP 224

Query: 204 LRN 206
           +R 
Sbjct: 225 VRE 227


>gi|89075406|ref|ZP_01161823.1| ribonuclease HII [Photobacterium sp. SKA34]
 gi|89048822|gb|EAR54392.1| ribonuclease HII [Photobacterium sp. SKA34]
          Length = 203

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/183 (48%), Positives = 117/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK++ KKR  L+++I   A+  S+ 
Sbjct: 18  IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTEKKRNLLFDEIKEKALSWSLG 77

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
                 IDK NI +AT+ A+  AV  L + P   LIDG  +PE LP  A AV+KGD    
Sbjct: 78  RCEADEIDKLNILQATMVAMQRAVAGLSLQPDYVLIDGNKVPE-LPMAAQAVVKGDLRVA 136

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKVTRDR M I   ++P YGF  H GYPT  H + +++ G    HR +F+P+
Sbjct: 137 EISAASIIAKVTRDREMEILGAEFPQYGFAKHKGYPTKAHFEALEQYGAIEQHRKSFKPV 196

Query: 205 RNL 207
           + +
Sbjct: 197 KRV 199


>gi|70728572|ref|YP_258321.1| ribonuclease HII [Pseudomonas fluorescens Pf-5]
 gi|97189183|sp|Q4KHG2|RNH2_PSEF5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|68342871|gb|AAY90477.1| ribonuclease HII [Pseudomonas fluorescens Pf-5]
          Length = 217

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 89/182 (48%), Positives = 117/182 (64%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE+L+++I   A+   I+
Sbjct: 24  VAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKLFDEICEKALSWCIA 83

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AVE L V P+ A+IDG   P+ L   A AV+KGDS   
Sbjct: 84  RAEVEEIDELNILHATMLAMQRAVEGLSVTPKLAMIDGNRCPK-LAMPAEAVVKGDSKVP 142

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P+
Sbjct: 143 AIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 202

Query: 205 RN 206
           R 
Sbjct: 203 RQ 204


>gi|226327034|ref|ZP_03802552.1| hypothetical protein PROPEN_00895 [Proteus penneri ATCC 35198]
 gi|225204252|gb|EEG86606.1| hypothetical protein PROPEN_00895 [Proteus penneri ATCC 35198]
          Length = 196

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 115/181 (63%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP N   G+ DSKK++ KKR  LY++I   A+  +I 
Sbjct: 11  IAGVDEVGRGPLVGAVVTAAVILDPANPIEGLTDSKKLTEKKRNALYDEIKEKALCWAIG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  + AVIKGDS+  
Sbjct: 71  RAEPEEIDELNILWATMKAMERAVAGLSITPDMVLIDGNRCPK-LPMASQAVIKGDSLVQ 129

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M    K YPDYGF  H GYPT  H + +   G +  HR +F P+
Sbjct: 130 EISAASILAKVTRDREMEELDKLYPDYGFAKHKGYPTVFHMEKLALLGATPYHRKSFAPV 189

Query: 205 R 205
           +
Sbjct: 190 K 190


>gi|54310070|ref|YP_131090.1| ribonuclease HII [Photobacterium profundum SS9]
 gi|73917828|sp|Q6LN38|RNH2_PHOPR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|46914509|emb|CAG21288.1| putative ribonuclease HII [Photobacterium profundum SS9]
          Length = 201

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/183 (48%), Positives = 118/183 (64%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L+++I   A+  S+ 
Sbjct: 16  IAGVDEVGRGPLVGAVVTAAVILDPNNPIVGLTDSKKLSEKKRNVLFDEIKEKAVAWSLG 75

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
               + ID+ NI +AT+ A+  AV +L V P   LIDG  IP+ LP  A AV+KGD    
Sbjct: 76  RCEPEEIDELNILQATMVAMQRAVADLSVQPDFVLIDGNKIPQ-LPMAAQAVVKGDLRVA 134

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKVTRDR M +   ++P YGF  H GYPT  H + ++  G    HR +F+P+
Sbjct: 135 EISAASIIAKVTRDREMEVLDAQFPQYGFAKHKGYPTKVHVEALELHGAIEQHRKSFKPV 194

Query: 205 RNL 207
           + +
Sbjct: 195 KRI 197


>gi|290473671|ref|YP_003466543.1| RNAse HII [Xenorhabdus bovienii SS-2004]
 gi|289172976|emb|CBJ79747.1| RNAse HII [Xenorhabdus bovienii SS-2004]
          Length = 196

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/181 (49%), Positives = 116/181 (64%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSKK++ K+RE LY +I   A+  S+ 
Sbjct: 11  IAGVDEVGRGPLVGAVVTAAVILDPAKPITGLMDSKKLTEKRREALYLEIKEKALCWSLG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AVE L + P   LIDG   P  LP  A AVIKGDS+  
Sbjct: 71  RAEPEEIDQLNILHATMLAMQRAVEGLAITPDYVLIDGNRCPA-LPMSALAVIKGDSLVA 129

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M    K++PDYGF  H GYPTA H + +   G +  HR +F P+
Sbjct: 130 EISAASILAKVTRDREMAELGKQFPDYGFAQHKGYPTALHLEKLALLGATEHHRKSFAPV 189

Query: 205 R 205
           +
Sbjct: 190 K 190


>gi|257439821|ref|ZP_05615576.1| ribonuclease HII [Faecalibacterium prausnitzii A2-165]
 gi|257197730|gb|EEU96014.1| ribonuclease HII [Faecalibacterium prausnitzii A2-165]
          Length = 214

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 118/193 (61%), Gaps = 2/193 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P +E +A +R +  +  AG+DE GRG L GPVVVAA ILDP    +GINDSKK++ KKRE
Sbjct: 12  PLYEYDAAIRAQYGF-FAGVDEAGRGPLCGPVVVAACILDPEKPVYGINDSKKLTEKKRE 70

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            L+++I   A+   I     + ID+ NI  AT+  +  A E L ++P   L+DG  +P  
Sbjct: 71  ALFDEICDKALAYKIVFVGPEIIDRDNILNATMSGMKQAAEGLDIVPNLVLVDGNRVPAA 130

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L   A  V+KGD+ S SI AASI+AKV+RDR M    K+YP Y    H GYPT  H ++I
Sbjct: 131 LEIPAQPVVKGDATSASIGAASILAKVSRDRYMMELDKQYPQYQLAKHKGYPTKLHYELI 190

Query: 189 KEKGPSCIHRLTF 201
           ++ G    +R +F
Sbjct: 191 EQYGIQPFYRRSF 203


>gi|229524248|ref|ZP_04413653.1| ribonuclease HII [Vibrio cholerae bv. albensis VL426]
 gi|229337829|gb|EEO02846.1| ribonuclease HII [Vibrio cholerae bv. albensis VL426]
          Length = 206

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 95/199 (47%), Positives = 123/199 (61%), Gaps = 7/199 (3%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E P FE+ A         +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S KK
Sbjct: 8   ELPPFEIPA-----GYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSEKK 62

Query: 68  REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L+ +I   A+  S+   S Q ID+ NI +AT+ A+  AV  L++ P   LIDG  IP
Sbjct: 63  RLALFPEIQEKALAWSVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNKIP 122

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           + LP +A AV+KGD     I+AASIIAKV RD+ M    K+YP +GF  H GYPTA H  
Sbjct: 123 K-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAHFA 181

Query: 187 VIKEKGPSCIHRLTFRPLR 205
            I++ G    HR +F P++
Sbjct: 182 AIEQHGVIEQHRKSFGPVK 200


>gi|313123917|ref|YP_004034176.1| ribonuclease hii [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280480|gb|ADQ61199.1| Ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 256

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 90/193 (46%), Positives = 122/193 (63%), Gaps = 7/193 (3%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           EK+ W     VAG+DEVGRG LAGPVV AA+IL  +     +NDSKK+S +KR  LY KI
Sbjct: 59  EKDFWAKGQLVAGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLTLYPKI 118

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
              A+ + +    ++ ID+ NI++A   A+  AVE L   P + L+D  ++P DLP    
Sbjct: 119 LQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSTRPDALLVDAMNVPVDLP--QL 176

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            +IKGD+ S SIAAASI+AKV RD LM    + YPDY FD + GY T  H + +++ GP+
Sbjct: 177 ELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALRKYGPT 236

Query: 195 CIHRLTFRPLRNL 207
            IHRLTF P+  +
Sbjct: 237 PIHRLTFSPVSEM 249


>gi|256823113|ref|YP_003147076.1| Ribonuclease H [Kangiella koreensis DSM 16069]
 gi|256796652|gb|ACV27308.1| Ribonuclease H [Kangiella koreensis DSM 16069]
          Length = 191

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 90/183 (49%), Positives = 121/183 (66%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG LAGPVV AA+ILDP N   G+ DSKK++ K+RE L  +I   A+  SI+
Sbjct: 7   IAGVDEVGRGPLAGPVVAAAVILDPANPIVGLADSKKLTEKRREALSIEIKEKALAWSIA 66

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI +A+L A+  AVE L   P  ALIDG   PE L C+  A+IKGDS   
Sbjct: 67  RAEVEEIDRINILQASLLAMKRAVETLSHSPELALIDGNHCPE-LDCRMEAIIKGDSKEP 125

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKV RD  M    + YP YGF  H GYPT +H++ I + G + IHR ++ P+
Sbjct: 126 AISAASILAKVARDTEMVEMEQTYPGYGFAKHKGYPTQQHREAIMQLGITPIHRRSYAPV 185

Query: 205 RNL 207
           + +
Sbjct: 186 QRM 188


>gi|300812547|ref|ZP_07092964.1| ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496420|gb|EFK31525.1| ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 256

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 90/193 (46%), Positives = 122/193 (63%), Gaps = 7/193 (3%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           EK+ W     VAG+DEVGRG LAGPVV AA+IL  +     +NDSKK+S +KR  LY KI
Sbjct: 59  EKDFWAKGQLVAGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLALYPKI 118

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
              A+ + +    ++ ID+ NI++A   A+  AVE L   P + L+D  ++P DLP    
Sbjct: 119 LQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSTRPDALLVDAMNVPVDLP--QL 176

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            +IKGD+ S SIAAASI+AKV RD LM    + YPDY FD + GY T  H + +++ GP+
Sbjct: 177 ELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALRKYGPT 236

Query: 195 CIHRLTFRPLRNL 207
            IHRLTF P+  +
Sbjct: 237 PIHRLTFSPVSEM 249


>gi|148549378|ref|YP_001269480.1| ribonuclease HII [Pseudomonas putida F1]
 gi|166226641|sp|A5W836|RNH2_PSEP1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|148513436|gb|ABQ80296.1| RNase HII [Pseudomonas putida F1]
          Length = 207

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 115/181 (63%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE L+++I   A+   I+
Sbjct: 14  VAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREALFDEICEKALSFCIA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID  NI +AT+ A+  AVE L + P+ ALIDG   P+ L   A  V+KGDS   
Sbjct: 74  RAEVEEIDSLNILQATMLAMQRAVEGLHITPKLALIDGNRCPK-LAVPAAPVVKGDSQVP 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKVTRDR M      YP YG   H GYPT  H + +   GP+ IHR +F P+
Sbjct: 133 AIAAASILAKVTRDREMSAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 192

Query: 205 R 205
           R
Sbjct: 193 R 193


>gi|26988337|ref|NP_743762.1| ribonuclease HII [Pseudomonas putida KT2440]
 gi|37999636|sp|Q88MG6|RNH2_PSEPK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|24983086|gb|AAN67226.1|AE016349_7 ribonuclease HII [Pseudomonas putida KT2440]
 gi|313500227|gb|ADR61593.1| RnhB [Pseudomonas putida BIRD-1]
          Length = 207

 Score =  162 bits (409), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 115/181 (63%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE L+++I   A+   I+
Sbjct: 14  VAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREALFDEICEKALSFCIA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID  NI +AT+ A+  AVE L + P+ ALIDG   P+ L   A  V+KGDS   
Sbjct: 74  RAEVEEIDSLNILQATMLAMQRAVEGLHITPKLALIDGNRCPK-LAVPAAPVVKGDSQVP 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKVTRDR M      YP YG   H GYPT  H + +   GP+ IHR +F P+
Sbjct: 133 AIAAASILAKVTRDREMSAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 192

Query: 205 R 205
           R
Sbjct: 193 R 193


>gi|206560439|ref|YP_002231203.1| ribonuclease HII [Burkholderia cenocepacia J2315]
 gi|238693107|sp|B4ECL7|RNH2_BURCJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|198036480|emb|CAR52377.1| ribonuclease HII [Burkholderia cenocepacia J2315]
          Length = 214

 Score =  162 bits (409), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 90/181 (49%), Positives = 120/181 (66%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS-SAIISIS 84
           V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKR+ LY+ I + S    ++
Sbjct: 28  VCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKVLSAKKRDLLYDLIVARSHAYCVA 87

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS   ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  +A A++ GD++  
Sbjct: 88  SASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LSVRAEAIVSGDALVP 146

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI+AASI+AKVTRDR++   H+++P YGF+ H GY TAKH   ++E GP   HR +F P+
Sbjct: 147 SISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAHRRSFAPV 206

Query: 205 R 205
           R
Sbjct: 207 R 207


>gi|330504230|ref|YP_004381099.1| ribonuclease HII [Pseudomonas mendocina NK-01]
 gi|328918516|gb|AEB59347.1| ribonuclease HII [Pseudomonas mendocina NK-01]
          Length = 208

 Score =  162 bits (409), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 90/183 (49%), Positives = 118/183 (64%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE L+++I   A+   I+
Sbjct: 14  VAGVDEVGRGPLCGAVVTAAVILDPARPIIGLNDSKKLTEARRELLFDEIREKALAWCIA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AVE L V PR ALIDG   P+ L   +  V+KGDS   
Sbjct: 74  RAEVEEIDRLNILHATMLAMQRAVEGLSVTPRLALIDGNRCPK-LAVPSAPVVKGDSRVP 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKV+RDR M    + YP YG   H GYPT  H + ++  GP+ IHR +F P+
Sbjct: 133 AIAAASILAKVSRDREMVEMDRLYPGYGIAGHKGYPTPVHLEALQRLGPTPIHRRSFAPV 192

Query: 205 RNL 207
           R L
Sbjct: 193 RAL 195


>gi|322418210|ref|YP_004197433.1| Ribonuclease H [Geobacter sp. M18]
 gi|320124597|gb|ADW12157.1| Ribonuclease H [Geobacter sp. M18]
          Length = 228

 Score =  162 bits (409), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 93/206 (45%), Positives = 125/206 (60%), Gaps = 7/206 (3%)

Query: 6   IPERPHFE---LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62
            P+ P  +   LE     +    +AG+DE GRG LAGPVV AA+I+    +  G+NDSK+
Sbjct: 5   FPDNPPLDMLALEGQALRRGYCRIAGVDEAGRGPLAGPVVAAAVIIPTGVLLPGVNDSKQ 64

Query: 63  ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           ++ +KREEL++ I   A+ + +    H  +D  NI +ATL A+  AV  L V P   LID
Sbjct: 65  LTEEKREELFDLIYREAVAVGVGIGDHALVDSINILQATLRAMSDAVRALSVAPDFILID 124

Query: 122 G-RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           G  SIP ++P +   V KGDS+SLSIAAASIIAKVTRDR+M +   ++  YGF SH GY 
Sbjct: 125 GISSIPMNIPQRT--VKKGDSLSLSIAAASIIAKVTRDRMMVVYDTQFSGYGFASHKGYG 182

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206
            A H   I E GP  IHR +F  ++ 
Sbjct: 183 AASHLAAIAELGPCPIHRKSFSGVKE 208


>gi|90413543|ref|ZP_01221534.1| ribonuclease HII [Photobacterium profundum 3TCK]
 gi|90325475|gb|EAS41958.1| ribonuclease HII [Photobacterium profundum 3TCK]
          Length = 201

 Score =  162 bits (409), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 87/183 (47%), Positives = 118/183 (64%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L+++I   A+  S+ 
Sbjct: 16  IAGVDEVGRGPLVGAVVTAAVILDPNNPIVGLTDSKKLSEKKRNVLFDEIKEKALAWSLG 75

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
               + ID+ NI +AT+ A+  AV +L + P   LIDG  IP+ LP  A AV+KGD    
Sbjct: 76  RCEPEEIDELNILQATMVAMQRAVADLNIQPDFVLIDGNKIPQ-LPMAAQAVVKGDLRVA 134

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKVTRDR M +   ++P YGF  H GYPT  H + ++  G    HR +F+P+
Sbjct: 135 EISAASIIAKVTRDREMEVLDAQFPQYGFAKHKGYPTKAHFEALELHGAIEQHRKSFKPV 194

Query: 205 RNL 207
           + +
Sbjct: 195 KRI 197


>gi|90580985|ref|ZP_01236786.1| ribonuclease HII [Vibrio angustum S14]
 gi|90437863|gb|EAS63053.1| ribonuclease HII [Vibrio angustum S14]
          Length = 203

 Score =  162 bits (409), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 88/183 (48%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK++ KKR  L+++I   A+  S+ 
Sbjct: 18  IAGVDEVGRGPLVGAVVTAAVILDPNNPIKGLTDSKKLTEKKRNLLFDEIKEKALSWSLG 77

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
                 ID  NI +AT+ A+  AV  L V P   LIDG  +PE LP  A AV+KGD    
Sbjct: 78  RCEADEIDNLNILQATMVAMQRAVAGLSVQPDYVLIDGNKVPE-LPMAAQAVVKGDLRVA 136

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKVTRDR M I   ++P YGF  H GYPT  H + +++ G    HR +F+P+
Sbjct: 137 EISAASIIAKVTRDREMEILDAEFPQYGFAKHKGYPTKAHFEALEQYGAIEQHRKSFKPV 196

Query: 205 RNL 207
           + +
Sbjct: 197 KRV 199


>gi|104783181|ref|YP_609679.1| ribonuclease HII [Pseudomonas entomophila L48]
 gi|122402183|sp|Q1I640|RNH2_PSEE4 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|95112168|emb|CAK16895.1| ribonuclease HII [Pseudomonas entomophila L48]
          Length = 207

 Score =  162 bits (409), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 116/181 (64%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  KR+ L+++I   A+   I+
Sbjct: 14  VAGVDEVGRGPLCGAVVTAAVILDPRRPILGLNDSKKLTEAKRDALFDEIREKALSFCIA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI +AT+ A+  AVE L + P+ ALIDG   P+ L   A  V+KGDS   
Sbjct: 74  RAEVEEIDRLNILQATMLAMQRAVEGLHITPKLALIDGNRCPK-LAVPAAPVVKGDSQVP 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKVTRDR M      YP YG   H GYPT  H + +   GP+ IHR +F P+
Sbjct: 133 AIAAASILAKVTRDREMSEFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 192

Query: 205 R 205
           R
Sbjct: 193 R 193


>gi|323526474|ref|YP_004228627.1| Ribonuclease H [Burkholderia sp. CCGE1001]
 gi|323383476|gb|ADX55567.1| Ribonuclease H [Burkholderia sp. CCGE1001]
          Length = 253

 Score =  161 bits (408), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 89/183 (48%), Positives = 121/183 (66%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAII-SI 83
           V G+DE GRG LAGPVV AA+I DP+  +  G++DSK ++ KKR+ELYEKI   A+   I
Sbjct: 26  VCGVDEAGRGPLAGPVVAAAVIFDPSKPMIRGLDDSKALTAKKRDELYEKIVDRALAYCI 85

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SA+ + ID  NI  AT+ A+  AVE L V P    +DG   P  L  ++ AVI GD++ 
Sbjct: 86  ASATVEEIDSLNILHATMLAMKRAVEGLAVTPTLVKVDGNRCPM-LSIRSEAVIGGDALV 144

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+ YP YGF++H GY T +H   ++E GP   HR +F P
Sbjct: 145 KSISAASILAKVTRDRMLLELHQTYPMYGFNAHAGYGTPQHLAALREHGPCEHHRRSFAP 204

Query: 204 LRN 206
           +R 
Sbjct: 205 VRE 207


>gi|209518722|ref|ZP_03267538.1| Ribonuclease H [Burkholderia sp. H160]
 gi|209500836|gb|EEA00876.1| Ribonuclease H [Burkholderia sp. H160]
          Length = 249

 Score =  161 bits (408), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 90/183 (49%), Positives = 119/183 (65%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAII-SI 83
           V G+DE GRG LAGPVV AA+I DP   +  G++DSK +S  KRE LY+KI   A+   I
Sbjct: 32  VCGVDEAGRGPLAGPVVAAAVIFDPAKPMIRGLDDSKALSANKREALYDKIVERALAYCI 91

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS + ID  NI  AT+ A+  AVE L V+P    +DG   P  L  ++ AVI GD++ 
Sbjct: 92  ASASVEEIDSLNILHATMLAMKRAVEGLSVVPTLVKVDGNRCPT-LSIRSEAVIGGDALV 150

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+ YP YGFD+H GY T +H   ++E GP   HR +F P
Sbjct: 151 KSISAASILAKVTRDRMLVELHQAYPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAP 210

Query: 204 LRN 206
           +R 
Sbjct: 211 VRE 213


>gi|330975385|gb|EGH75451.1| ribonuclease HII [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 217

 Score =  161 bits (408), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 90/181 (49%), Positives = 115/181 (63%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  KRE+LY +I   A+   I+
Sbjct: 14  VAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEAKREKLYVEIQEKALCWFIA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AVE L + PR ALIDG   P+ L   +  V+KGDS   
Sbjct: 74  RAEVEEIDQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQ-LSVPSAPVVKGDSKVP 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P+
Sbjct: 133 AIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 192

Query: 205 R 205
           R
Sbjct: 193 R 193


>gi|325125945|gb|ADY85275.1| Ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 256

 Score =  161 bits (408), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 89/193 (46%), Positives = 122/193 (63%), Gaps = 7/193 (3%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           EK+ W     V G+DEVGRG LAGPVV AA+IL  +     +NDSKK+S +KR  LY KI
Sbjct: 59  EKDFWAKGQLVGGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLALYPKI 118

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
              A+ + +    ++ ID+ NI++A   A+  AVE L + P + L+D  ++P DLP    
Sbjct: 119 LQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSIRPDALLVDAMNVPVDLP--QL 176

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            +IKGD+ S SIAAASI+AKV RD LM    + YPDY FD + GY T  H + +++ GP+
Sbjct: 177 ELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALRKYGPT 236

Query: 195 CIHRLTFRPLRNL 207
            IHRLTF P+  +
Sbjct: 237 PIHRLTFSPVSEM 249


>gi|225180946|ref|ZP_03734394.1| Ribonuclease H [Dethiobacter alkaliphilus AHT 1]
 gi|225168427|gb|EEG77230.1| Ribonuclease H [Dethiobacter alkaliphilus AHT 1]
          Length = 260

 Score =  161 bits (408), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 97/191 (50%), Positives = 121/191 (63%), Gaps = 2/191 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            +LE   REK    +AG+DE GRG LAGPVV  A+IL  N    G+NDSKK++ +KREEL
Sbjct: 64  LKLERAAREKGFTYIAGVDEAGRGPLAGPVVAGAVILPDNFFLAGLNDSKKLTPQKREEL 123

Query: 72  YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           YE ITS A+  S+       ID  NI +A+  A+Y A+  L V P  AL+D     E+LP
Sbjct: 124 YEAITSEAVAWSVGIGEVWEIDDINILQASKLAMYRALLTLSVKPDYALLD-ALELEELP 182

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                V+ GD +SLSIAAAS++AKVTRDRLM    K YP YGF  H GYPTA+H+  I +
Sbjct: 183 FAQQGVVGGDGLSLSIAAASVVAKVTRDRLMCEQEKMYPGYGFSLHKGYPTAEHRSAIAK 242

Query: 191 KGPSCIHRLTF 201
            GP  IHR +F
Sbjct: 243 LGPCPIHRKSF 253


>gi|149183639|ref|ZP_01862056.1| ribonuclease HII [Bacillus sp. SG-1]
 gi|148848656|gb|EDL62889.1| ribonuclease HII [Bacillus sp. SG-1]
          Length = 258

 Score =  161 bits (408), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 91/195 (46%), Positives = 123/195 (63%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +R++    +AGIDEVGRG LAGPVV AA+IL  +    GINDSKK+S K+RE  Y+
Sbjct: 63  FENELRDQGFELIAGIDEVGRGPLAGPVVAAAVILPADFCLLGINDSKKLSEKQREAFYQ 122

Query: 74  KITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            IT  AI  S    S Q ID+ NI++A+  A+  A+  L V P   LID   +    P  
Sbjct: 123 YITEEAIAWSTGIISPQEIDELNIYQASKKAMVTALNTLNVKPDHLLIDAMELGSPYP-- 180

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SIAAASI+AKVTRDR+M    + Y  YG + ++GY T +H + + E G
Sbjct: 181 EMSLIKGDARSISIAAASIVAKVTRDRMMEEYSQVYSGYGLEKNMGYGTKEHLEGLNEFG 240

Query: 193 PSCIHRLTFRPLRNL 207
           PS IHR +F P++ L
Sbjct: 241 PSPIHRKSFAPVKEL 255


>gi|325686018|gb|EGD28077.1| ribonuclease HII [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 256

 Score =  161 bits (408), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 90/193 (46%), Positives = 122/193 (63%), Gaps = 7/193 (3%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           EK+ W     VAG+DEVGRG LAGPVV AA+IL  +     +NDSKK+S +KR  LY KI
Sbjct: 59  EKDFWAKGQLVAGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLVLYPKI 118

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
              A+ + +    ++ ID+ NI++A   A+  AVE L   P + L+D  ++P DLP    
Sbjct: 119 LQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSTRPDALLVDAMNVPVDLP--QL 176

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            +IKGD+ S SIAAASI+AKV RD LM    + YPDY FD + GY T  H + +++ GP+
Sbjct: 177 ELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALRKYGPT 236

Query: 195 CIHRLTFRPLRNL 207
            IHRLTF P+  +
Sbjct: 237 PIHRLTFSPVSEM 249


>gi|145634215|ref|ZP_01789926.1| ribonuclease HII [Haemophilus influenzae PittAA]
 gi|145268659|gb|EDK08652.1| ribonuclease HII [Haemophilus influenzae PittAA]
          Length = 197

 Score =  161 bits (408), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 118/182 (64%), Gaps = 1/182 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L E+I   A+  ++ 
Sbjct: 11  IAGVDEVGRGPLVGAVVTAAVILDPNNPIQGLADSKKLSEKKRLALSEEIKEKALAWALG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI +A+L A+  AV++L++ P   L+DG  IP+DL   A AV+KGDS+  
Sbjct: 71  RAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLAIPAQAVVKGDSLVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR +F P+
Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRRSFAPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KK 192


>gi|85714250|ref|ZP_01045238.1| ribonuclease HII/HIII [Nitrobacter sp. Nb-311A]
 gi|85698697|gb|EAQ36566.1| ribonuclease HII/HIII [Nitrobacter sp. Nb-311A]
          Length = 215

 Score =  161 bits (408), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 90/184 (48%), Positives = 120/184 (65%), Gaps = 1/184 (0%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           + +WPVAG DE GRG LAGPVV AA++LDPN IP GI+DSK+++  +REEL+E+IT++A 
Sbjct: 3   RGVWPVAGCDEAGRGPLAGPVVAAAVVLDPNRIPEGIDDSKRLTAARREELFEEITATAS 62

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            +I+ A    ID+ NI +A+L A+  AV  L        +DGR   E + C+   VI GD
Sbjct: 63  FAIAVAPIARIDRDNILRASLWALARAVHALPDAAEHVFVDGRDRIE-VACECEPVIGGD 121

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
            + LSIAAASI+AKVTRDRLM       P YGF++H GY   +H + +   GPS  HR  
Sbjct: 122 GLVLSIAAASIVAKVTRDRLMCRLALDCPGYGFETHKGYAVPEHLEALGRLGPSPHHRSF 181

Query: 201 FRPL 204
           F P+
Sbjct: 182 FAPV 185


>gi|221066099|ref|ZP_03542204.1| Ribonuclease H [Comamonas testosteroni KF-1]
 gi|220711122|gb|EED66490.1| Ribonuclease H [Comamonas testosteroni KF-1]
          Length = 243

 Score =  161 bits (408), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 88/180 (48%), Positives = 119/180 (66%), Gaps = 2/180 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DE GRG LAGPVV AA+ILD      G+NDSKK++  +RE LY++I + A+   I+
Sbjct: 25  VAGVDEAGRGPLAGPVVAAAVILDDMKPIAGLNDSKKLTANRREVLYDEIRAKALCFCIA 84

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS Q ID+ NI KATL A+  AV  L++ P   L+DG  +P+ +  QA A++KGDS+  
Sbjct: 85  QASVQEIDEINILKATLLAMRRAVMGLRLKPVLVLVDGNQLPQ-IDVQAEAIVKGDSLVQ 143

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKVTRDR       +YP YGF  H GY TA H Q ++  G +  HR +F P+
Sbjct: 144 AISAASILAKVTRDRWCERLDAQYPQYGFAGHKGYGTAAHLQALRAHGATAEHRRSFAPV 203


>gi|254511405|ref|ZP_05123472.1| ribonuclease HII [Rhodobacteraceae bacterium KLH11]
 gi|221535116|gb|EEE38104.1| ribonuclease HII [Rhodobacteraceae bacterium KLH11]
          Length = 205

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 87/198 (43%), Positives = 133/198 (67%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P++ELE  +  +    VAG+DEVGRG LAGPVV AA+IL+P++ P G+NDSKK++ K+R 
Sbjct: 4   PNYELEQALLARGYVRVAGVDEVGRGPLAGPVVAAAVILNPDDFPEGLNDSKKLTAKRRG 63

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L   + + A ++++ AS   ID+HNI +A+  A+  AV  L   P   LIDG  IP  L
Sbjct: 64  ALDLALRAQASVAVAQASVAEIDEHNILRASHLAMVRAVAALNPAPDFLLIDGNMIPRGL 123

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              + AV++GD+ S+SIA ASI+AK  RDRLM    +++P YG++++ GYPT +H++ ++
Sbjct: 124 KIPSQAVVRGDARSVSIAGASIVAKNWRDRLMVDLAQQHPGYGWEANAGYPTKQHREALR 183

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G +  HR +F+P+ N+
Sbjct: 184 NLGVTPHHRRSFKPVHNI 201


>gi|76788741|ref|YP_327827.1| ribonuclease HII [Chlamydia trachomatis A/HAR-13]
 gi|237804378|ref|YP_002888532.1| ribonuclease HII [Chlamydia trachomatis B/TZ1A828/OT]
 gi|97182374|sp|Q3KMZ3|RNH2_CHLTA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|76167271|gb|AAX50279.1| ribonuclease HII [Chlamydia trachomatis A/HAR-13]
 gi|231272678|emb|CAX09581.1| ribonuclease HII [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 217

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 6/201 (2%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E+  FE +A+  E+    VAG+DE GRG LAGPVV  A IL    +  GI+DSKK++ K+
Sbjct: 13  EKSIFENQAI--EQGYSRVAGVDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQ 70

Query: 68  REELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           R  LYE +     +   +   S + ID+ NI +AT +A+  A+ +LQ  P   L+DG  +
Sbjct: 71  RRYLYELLLEDPEVDCGVGVVSVERIDEINILEATKEAMVQAIASLQSTPDFLLVDGLFL 130

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  +P  +  +IKGD+ S+SIAAASIIAK  RD LMR  H +YP+YGFD H GY TA H 
Sbjct: 131 PHKVP--SLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHL 188

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
           Q +K  GP   HR +F P++ 
Sbjct: 189 QALKHFGPCVYHRKSFSPVKE 209


>gi|313114085|ref|ZP_07799637.1| ribonuclease HII [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623494|gb|EFQ06897.1| ribonuclease HII [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 215

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 87/193 (45%), Positives = 116/193 (60%), Gaps = 2/193 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P +E +A VR +     AG+DE GRG L GPV VAA ILDP N  FGINDSKK++ KKRE
Sbjct: 12  PLYEYDAAVRSQ-YGCFAGVDEAGRGPLCGPVCVAACILDPENPVFGINDSKKLTEKKRE 70

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            L+++I   A+   I     + ID+ NI  AT+  +  AVE L ++P   L+DG   P  
Sbjct: 71  ALFDEIIEKALAYKIVFVGPEIIDRDNILNATMGGMKQAVEELDIVPNLVLVDGNRTPAG 130

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L   A  V+KGD+ S SI AAS++AKV+RDR M    ++YP Y    H GYPT  H ++I
Sbjct: 131 LLVPAQPVVKGDATSASIGAASVLAKVSRDRYMLELDRQYPQYQLAKHKGYPTKLHYELI 190

Query: 189 KEKGPSCIHRLTF 201
            + G    +R +F
Sbjct: 191 AQYGIQPFYRRSF 203


>gi|260432295|ref|ZP_05786266.1| ribonuclease HII [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416123|gb|EEX09382.1| ribonuclease HII [Silicibacter lacuscaerulensis ITI-1157]
          Length = 229

 Score =  161 bits (407), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 87/198 (43%), Positives = 130/198 (65%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F LE  +  +    VAG+DEVGRG LAGPVV AA+IL+P +IP G+NDSKK++ ++R 
Sbjct: 23  PDFNLEREMMAQGHARVAGVDEVGRGPLAGPVVAAAVILNPQDIPKGLNDSKKLTARRRL 82

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L   + + +  SI+ AS   ID  NI  A+  A+  AV  L+  P   LIDG  IP+ L
Sbjct: 83  ALDADLRARSEFSIAEASVAEIDDLNILYASHLAMVRAVAALKPAPDYVLIDGNLIPKGL 142

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              A AV++GD+ S+SIAAASI+AK  RD+LM    +++P YG++++ GYP+ +H++ ++
Sbjct: 143 TVPARAVVRGDAKSVSIAAASILAKNWRDQLMVDLAQQHPGYGWETNAGYPSKQHREALQ 202

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G +  HR +F+P+ N+
Sbjct: 203 NLGVTPHHRRSFKPVHNI 220


>gi|260557476|ref|ZP_05829691.1| ribonuclease HII [Acinetobacter baumannii ATCC 19606]
 gi|260409102|gb|EEX02405.1| ribonuclease HII [Acinetobacter baumannii ATCC 19606]
          Length = 188

 Score =  161 bits (407), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 87/183 (47%), Positives = 120/183 (65%), Gaps = 5/183 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DE GRG L G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I   A+  SI+
Sbjct: 3   VAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWSIA 62

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--PCQAFAVIKGDSI 142
            A+H  ID+ NI +AT  A+  AVE L+  P+  ++DG  IP+ +  PC+A  +I GD+ 
Sbjct: 63  EATHAEIDELNILQATFLAMQRAVEGLKTQPQKVIVDGNQIPKGIIIPCEA--IIGGDAS 120

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRDR M    ++YP +GF  H GYPT  H + I   G    HR ++ 
Sbjct: 121 HAEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYA 180

Query: 203 PLR 205
           P++
Sbjct: 181 PVK 183


>gi|153213786|ref|ZP_01948994.1| ribonuclease HII [Vibrio cholerae 1587]
 gi|124115710|gb|EAY34530.1| ribonuclease HII [Vibrio cholerae 1587]
          Length = 206

 Score =  161 bits (407), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 94/199 (47%), Positives = 123/199 (61%), Gaps = 7/199 (3%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E P FE+ A         +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S KK
Sbjct: 8   ELPPFEIPA-----GYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSEKK 62

Query: 68  REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L+ +I   A+  ++   S Q ID+ NI +AT+ A+  AV  L++ P   LIDG  IP
Sbjct: 63  RLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNKIP 122

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           + LP +A AV+KGD     I+AASIIAKV RD+ M    K+YP +GF  H GYPTA H  
Sbjct: 123 K-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAHFA 181

Query: 187 VIKEKGPSCIHRLTFRPLR 205
            I++ G    HR +F P++
Sbjct: 182 AIEQHGVIEQHRKSFGPVK 200


>gi|255002889|ref|ZP_05277853.1| ribonuclease HII [Anaplasma marginale str. Puerto Rico]
          Length = 238

 Score =  161 bits (407), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 90/201 (44%), Positives = 123/201 (61%), Gaps = 3/201 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKK 67
           P F +E  +R   +  + G+DEVG GA+AGPVV AA+ L      +   I DSK +S KK
Sbjct: 5   PSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKALSSKK 64

Query: 68  REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           REEL+ KIT+ A   +  A  + I++HNI  A+  ++   ++NL V     L+DG   P 
Sbjct: 65  REELFCKITAHAKYGVGFARVREIEQHNILVASHISM-KTLQNLGVKADLVLVDGSRAPA 123

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            LP     ++KGDSIS SIAAASIIAKVTRDR MR  H++YP+Y ++ + GY T  H Q 
Sbjct: 124 GLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKAHMQS 183

Query: 188 IKEKGPSCIHRLTFRPLRNLS 208
           +K  G +  HR TF P++ LS
Sbjct: 184 LKLYGKTAQHRSTFAPVKQLS 204


>gi|186476082|ref|YP_001857552.1| ribonuclease HII [Burkholderia phymatum STM815]
 gi|184192541|gb|ACC70506.1| Ribonuclease H [Burkholderia phymatum STM815]
          Length = 249

 Score =  161 bits (407), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 89/183 (48%), Positives = 120/183 (65%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII-SI 83
           V G+DE GRG LAGPVV AA+ILDP      G+ DSK ++ KKR+ELYEKI   A+   +
Sbjct: 33  VCGVDEAGRGPLAGPVVAAAVILDPAKPRIRGLTDSKVLTAKKRDELYEKIIERALAYCV 92

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS + ID  NI  AT+ A+  AVE L+V P  A IDG   P  L  ++ A++ GD + 
Sbjct: 93  ASASVEEIDSLNILHATMLAMKRAVEGLRVTPTLAKIDGNRCPS-LSIRSEAIVSGDLLV 151

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR++   H+ +P YGFD+H GY T +H   ++E GP   HR +F P
Sbjct: 152 PCISAASILAKVTRDRMLLELHRMFPVYGFDAHAGYGTPQHLTALREHGPCEHHRRSFAP 211

Query: 204 LRN 206
           +R+
Sbjct: 212 VRD 214


>gi|254252072|ref|ZP_04945390.1| Ribonuclease H [Burkholderia dolosa AUO158]
 gi|124894681|gb|EAY68561.1| Ribonuclease H [Burkholderia dolosa AUO158]
          Length = 215

 Score =  161 bits (407), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 87/181 (48%), Positives = 119/181 (65%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           V G+DE GRG LAGPVV AA+IL+P     G++DSK +S KKR+ LYE I   ++   ++
Sbjct: 29  VCGVDEAGRGPLAGPVVAAAVILNPERPIDGLDDSKVLSAKKRDALYELIVERSLAYCVA 88

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS   ID  NI  AT+ A+  AVE L ++P  A IDG   P  L  +A A++ GD++  
Sbjct: 89  SASVDEIDTLNILHATMLAMKRAVEGLSILPTLAQIDGNRCPT-LSVRAEAIVSGDALVP 147

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI+AASI+AKVTRDR++   H+++P YGF+ H GY T KH   ++E GP   HR +F P+
Sbjct: 148 SISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTEKHLAALREHGPCEAHRRSFAPV 207

Query: 205 R 205
           R
Sbjct: 208 R 208


>gi|330445159|ref|ZP_08308811.1| ribonuclease HII family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489350|dbj|GAA03308.1| ribonuclease HII family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 203

 Score =  161 bits (407), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 87/183 (47%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK++ KKR  L+++I   A+  S+ 
Sbjct: 18  IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTEKKRNLLFDEIKEKALSWSLG 77

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
                 ID+ NI +AT+ A+  AV  L + P   LIDG  +PE LP  A AV+KGD    
Sbjct: 78  RCEADEIDELNILQATMVAMQRAVAGLHIQPDFVLIDGNKVPE-LPMAAQAVVKGDLRVA 136

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKVTRDR M     +YP YGF  H GYPT  H + +++ G    HR +F+P+
Sbjct: 137 EISAASIIAKVTRDREMEALDAEYPQYGFAKHKGYPTKAHFEALEQHGAIEQHRKSFKPV 196

Query: 205 RNL 207
           + +
Sbjct: 197 KRI 199


>gi|312622766|ref|YP_004024379.1| ribonuclease h [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203233|gb|ADQ46560.1| Ribonuclease H [Caldicellulosiruptor kronotskyensis 2002]
          Length = 206

 Score =  161 bits (407), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 86/198 (43%), Positives = 129/198 (65%), Gaps = 4/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           +FE+E  +  +    + G+DE GRG LAGPV  AA+++D   I  G+ DSKK++ KKRE+
Sbjct: 9   YFEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREK 68

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L+E+I   +I  S++    + ID+ NI+ AT  A+ +A+ENL++ P   L+DG  IP +L
Sbjct: 69  LFEEIIKESIAYSVAMVDSKVIDEININNATFLAMKNAIENLKIEPDIVLVDGYKIP-NL 127

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                A+IKGD  S SIA ASI+AKV+RDR +     KYP Y F+ H GY T +H ++++
Sbjct: 128 SFNQRAIIKGDKKSYSIACASILAKVSRDRFIVEISSKYPLYKFEKHKGYGTKEHIEILQ 187

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + GP  IHR++F  L+N+
Sbjct: 188 KYGPCEIHRISF--LKNI 203


>gi|226952655|ref|ZP_03823119.1| ribonuclease HII [Acinetobacter sp. ATCC 27244]
 gi|226836592|gb|EEH68975.1| ribonuclease HII [Acinetobacter sp. ATCC 27244]
          Length = 200

 Score =  161 bits (407), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 123/192 (64%), Gaps = 6/192 (3%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76
           +V   NM  +AG+DE GRG L G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I 
Sbjct: 7   LVERCNM-TIAGVDEAGRGPLVGSVVAAAVILDPNNPIEGLNDSKKLTEKKREKLFAEIQ 65

Query: 77  SSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--PCQA 133
             A+  SI+ ASH  ID+ NI +AT  A+  AVE L   P   ++DG  IP+ +  PC+A
Sbjct: 66  EKALAWSIAEASHVEIDEFNILQATFLAMRRAVEALATQPAKVIVDGNQIPKGITIPCEA 125

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             ++ GD+    I+AASI+AKVTRDR M+    +YP+YGF  H GYPT  H + I   G 
Sbjct: 126 --IVGGDASHAEISAASILAKVTRDRQMKALDLEYPNYGFAKHKGYPTKAHFEAIAIHGV 183

Query: 194 SCIHRLTFRPLR 205
              HR ++ P++
Sbjct: 184 IDEHRRSYGPVK 195


>gi|322507786|gb|ADX03240.1| rnhB [Acinetobacter baumannii 1656-2]
          Length = 188

 Score =  161 bits (407), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 86/183 (46%), Positives = 120/183 (65%), Gaps = 5/183 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DE GRG L G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I   A+  SI+
Sbjct: 3   VAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWSIA 62

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--PCQAFAVIKGDSI 142
            A+H  ID+ NI +AT  A+  AVE L+  P+  ++DG  IP+ +  PC+A  ++ GD+ 
Sbjct: 63  EATHAEIDELNILQATFLAMQRAVEGLKTQPQKVIVDGNQIPKGIIIPCEA--IVGGDAS 120

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRDR M    ++YP +GF  H GYPT  H + I   G    HR ++ 
Sbjct: 121 HAEISAASILAKVTRDRQMAELDQQYPLFGFAKHQGYPTKAHFEAIAAHGVIDQHRRSYA 180

Query: 203 PLR 205
           P++
Sbjct: 181 PVK 183


>gi|312134790|ref|YP_004002128.1| ribonuclease h [Caldicellulosiruptor owensensis OL]
 gi|311774841|gb|ADQ04328.1| Ribonuclease H [Caldicellulosiruptor owensensis OL]
          Length = 206

 Score =  160 bits (406), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 86/198 (43%), Positives = 129/198 (65%), Gaps = 4/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           +FE+E  +  +    + G+DE GRG LAGPV  AA+++D   I  G+ DSKK++ KKRE+
Sbjct: 9   YFEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREK 68

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L+E+I   +I  S++    + ID+ NI+ AT  A+ +A+ENL++ P   L+DG  IP +L
Sbjct: 69  LFEEIIKESIAYSVAMVDSKIIDEININNATFSAMKNAIENLKIEPDIVLVDGYEIP-NL 127

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                A+IKGD  S SIA ASI+AKV+RDR +     KYP Y F+ H GY T +H ++++
Sbjct: 128 NFNQRAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPLYKFEKHKGYGTKEHIEILR 187

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + GP  IHR++F  L+N+
Sbjct: 188 KYGPCEIHRISF--LKNI 203


>gi|330950666|gb|EGH50926.1| ribonuclease HII [Pseudomonas syringae Cit 7]
          Length = 218

 Score =  160 bits (406), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 115/181 (63%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE+LY +I   A+   I+
Sbjct: 15  VAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKLYVEIQEKALCWFIA 74

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AVE L + PR ALIDG   P+ L   +  V+KGDS   
Sbjct: 75  RAEVEEIDQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQ-LSVPSAPVVKGDSKVP 133

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P+
Sbjct: 134 AIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 193

Query: 205 R 205
           R
Sbjct: 194 R 194


>gi|327183486|gb|AEA31933.1| ribonuclease HII [Lactobacillus amylovorus GRL 1118]
          Length = 252

 Score =  160 bits (406), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 89/193 (46%), Positives = 122/193 (63%), Gaps = 7/193 (3%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           EK  W     VAG+DEVGRG LAGPVV AA+I+D +     +NDSKK++ ++R  LY KI
Sbjct: 58  EKEFWAKNQLVAGVDEVGRGPLAGPVVTAAVIIDHDFDLIDVNDSKKLTPERRLALYPKI 117

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
              A+ + I   S Q ID+ NI++A   A+  AV  L + P + ++D  ++P DLP    
Sbjct: 118 LEEAVSVGIGVKSSQVIDQINIYEADRQAMAQAVRALDIKPDALVVDAMNVPVDLP--QV 175

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            +IKGD+ S SIAAASI+AKV RD+LM    K YP YGF ++ GY T +H   +K+ GP+
Sbjct: 176 KLIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFQNNAGYGTKEHIAALKKYGPT 235

Query: 195 CIHRLTFRPLRNL 207
            IHR TF P+ + 
Sbjct: 236 AIHRKTFAPVSDF 248


>gi|315038209|ref|YP_004031777.1| ribonuclease HII [Lactobacillus amylovorus GRL 1112]
 gi|325956663|ref|YP_004292075.1| ribonuclease HII [Lactobacillus acidophilus 30SC]
 gi|312276342|gb|ADQ58982.1| ribonuclease HII [Lactobacillus amylovorus GRL 1112]
 gi|325333228|gb|ADZ07136.1| ribonuclease HII [Lactobacillus acidophilus 30SC]
          Length = 252

 Score =  160 bits (406), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 89/193 (46%), Positives = 122/193 (63%), Gaps = 7/193 (3%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           EK  W     VAG+DEVGRG LAGPVV AA+I+D +     +NDSKK++ ++R  LY KI
Sbjct: 58  EKEFWAKNQLVAGVDEVGRGPLAGPVVTAAVIIDHDFDLIDVNDSKKLTPERRLALYPKI 117

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
              A+ + I   S Q ID+ NI++A   A+  AV  L + P + ++D  ++P DLP    
Sbjct: 118 LEEAVSVGIGVKSSQVIDQINIYEADRQAMAQAVRALDIKPDALVVDAMNVPVDLP--QV 175

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            +IKGD+ S SIAAASI+AKV RD+LM    K YP YGF ++ GY T +H   +K+ GP+
Sbjct: 176 KLIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFQNNAGYGTKEHIAALKKYGPT 235

Query: 195 CIHRLTFRPLRNL 207
            IHR TF P+ + 
Sbjct: 236 AIHRKTFAPVSDF 248


>gi|145630149|ref|ZP_01785931.1| ribonuclease HII [Haemophilus influenzae R3021]
 gi|144984430|gb|EDJ91853.1| ribonuclease HII [Haemophilus influenzae R3021]
          Length = 197

 Score =  160 bits (406), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 118/182 (64%), Gaps = 1/182 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L E+I   A+  ++ 
Sbjct: 11  IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLALAEEIKEKALAWALG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI +A+L A+  A+++L++ P   L+DG  IP+DL   A AV+KGDS+  
Sbjct: 71  RAEANEIDEINILQASLLAMTRAIKSLKIQPHFVLVDGNKIPKDLAIPAQAVVKGDSLVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR +F P+
Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRRSFAPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KK 192


>gi|89092102|ref|ZP_01165057.1| ribonuclease HII [Oceanospirillum sp. MED92]
 gi|89083837|gb|EAR63054.1| ribonuclease HII [Oceanospirillum sp. MED92]
          Length = 199

 Score =  160 bits (406), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 90/183 (49%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPN    G+ DSKK++ K+RE LY +I   A+   ++
Sbjct: 14  IAGVDEVGRGPLVGNVVAAAVILDPNKPIEGLADSKKLTAKRREALYHEIKDKALAWCVA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS + ID+ NI  A++ A+  AVE L +      +DG   P DL C +  V+KGDS   
Sbjct: 74  SASPEEIDQINILHASMLAMKRAVEGLPLKAEFVYVDGNRSP-DLECPSEPVVKGDSKIP 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RDR M    K YP YGF  H GYPTA H   +KE GP   HR +F+P+
Sbjct: 133 EISAASILAKVDRDREMEELDKTYPQYGFAKHKGYPTAAHFAALKEHGPLLEHRRSFKPV 192

Query: 205 RNL 207
           R L
Sbjct: 193 REL 195


>gi|296158890|ref|ZP_06841718.1| Ribonuclease H [Burkholderia sp. Ch1-1]
 gi|295890765|gb|EFG70555.1| Ribonuclease H [Burkholderia sp. Ch1-1]
          Length = 247

 Score =  160 bits (406), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 90/183 (49%), Positives = 122/183 (66%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAII-SI 83
           V G+DE GRG LAGPVV AA+I DP+  +  G++DSK +S KKR+ELY+KI   A+   I
Sbjct: 31  VCGVDEAGRGPLAGPVVAAAVIFDPSKPMIRGLDDSKVLSAKKRDELYDKIVDRALAYCI 90

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS + ID  NI  AT+ A+  AVE L V+P    IDG   P  L  ++ AVI GD++ 
Sbjct: 91  ASASVEEIDSLNILHATMLAMKRAVEGLSVVPTLVKIDGNRCPT-LSVRSEAVIGGDALV 149

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+ +P YGF++H GY T +H   ++E GP   HR +F P
Sbjct: 150 KSISAASILAKVTRDRMLLELHQTHPVYGFNAHAGYGTPQHLAALREHGPCEHHRRSFAP 209

Query: 204 LRN 206
           +R 
Sbjct: 210 VRE 212


>gi|295687798|ref|YP_003591491.1| Ribonuclease H [Caulobacter segnis ATCC 21756]
 gi|295429701|gb|ADG08873.1| Ribonuclease H [Caulobacter segnis ATCC 21756]
          Length = 209

 Score =  160 bits (406), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 91/183 (49%), Positives = 117/183 (63%), Gaps = 4/183 (2%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83
           PV G+DE GRG  AGPV  AA+ILDP+ +P G+NDSKK++ K R  L E+I + AI   +
Sbjct: 11  PVCGVDEAGRGPWAGPVSAAAVILDPDRVPKGLNDSKKLTAKARAALEEEIKAVAIAWCV 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPEDLPCQAFAVIKGDSI 142
             AS + I ++NI  AT  A+  A+E L V P  AL+DG    P  LPC+   V+KGDS+
Sbjct: 71  DMASIEEIAEYNILHATGRAMCRAIEGLSVTPAIALVDGNYRFP--LPCEIKTVVKGDSL 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           S SIAAASI+AK  RDRLM      YP YGF SH GY    H + + + GPS IHRL + 
Sbjct: 129 SCSIAAASILAKEARDRLMIEMDAVYPGYGFASHKGYHARIHVEGLVKLGPSPIHRLGWA 188

Query: 203 PLR 205
           P++
Sbjct: 189 PVK 191


>gi|66044605|ref|YP_234446.1| ribonuclease HII [Pseudomonas syringae pv. syringae B728a]
 gi|75502991|sp|Q4ZWR4|RNH2_PSEU2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|63255312|gb|AAY36408.1| Ribonuclease H [Pseudomonas syringae pv. syringae B728a]
 gi|330968946|gb|EGH69012.1| ribonuclease HII [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 218

 Score =  160 bits (406), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 115/181 (63%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE+LY +I   A+   I+
Sbjct: 15  VAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKLYVEIQEKALCWFIA 74

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AVE L + PR ALIDG   P+ L   +  V+KGDS   
Sbjct: 75  RAEVEEIDQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQ-LSVPSAPVVKGDSKVP 133

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P+
Sbjct: 134 AIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 193

Query: 205 R 205
           R
Sbjct: 194 R 194


>gi|330896074|gb|EGH28295.1| ribonuclease HII [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330936802|gb|EGH40959.1| ribonuclease HII [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 218

 Score =  160 bits (406), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 115/181 (63%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE+LY +I   A+   I+
Sbjct: 15  VAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKLYVEIQEKALCWFIA 74

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AVE L + PR ALIDG   P+ L   +  V+KGDS   
Sbjct: 75  RAEVEEIDQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQ-LSVPSAPVVKGDSKVP 133

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P+
Sbjct: 134 AIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 193

Query: 205 R 205
           R
Sbjct: 194 R 194


>gi|104774162|ref|YP_619142.1| ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|123077255|sp|Q1G9U8|RNH2_LACDA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|103423243|emb|CAI98076.1| Ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
          Length = 256

 Score =  160 bits (406), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 89/193 (46%), Positives = 121/193 (62%), Gaps = 7/193 (3%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           EK+ W     V G+DEVGRG LAGPVV AA+IL  +     +NDSKK+S +KR  LY KI
Sbjct: 59  EKDFWAKGQLVGGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLALYPKI 118

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
              A+ + +    ++ ID+ NI++A   A+  AVE L   P + L+D  ++P DLP    
Sbjct: 119 LQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSTRPDALLVDAMNVPVDLP--QL 176

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            +IKGD+ S SIAAASI+AKV RD LM    + YPDY FD + GY T  H + +++ GP+
Sbjct: 177 ELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALRKYGPT 236

Query: 195 CIHRLTFRPLRNL 207
            IHRLTF P+  +
Sbjct: 237 PIHRLTFSPVSEM 249


>gi|258514489|ref|YP_003190711.1| ribonuclease HII [Desulfotomaculum acetoxidans DSM 771]
 gi|257778194|gb|ACV62088.1| Ribonuclease H [Desulfotomaculum acetoxidans DSM 771]
          Length = 268

 Score =  160 bits (406), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 86/197 (43%), Positives = 129/197 (65%), Gaps = 2/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +E E+  R K    +AG+DE GRG LAGPVV AA+IL  N    G+NDSKK+    RE L
Sbjct: 62  YEQESKYRSKGFGLIAGVDEAGRGPLAGPVVAAAVILPENACLPGLNDSKKLPVSARERL 121

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+  ++  AS + I + NI +A+L A+  +V++L+V P   L+DG +   +LP
Sbjct: 122 FVAIKPIALSWAVGMASVEEICELNILQASLLAMCRSVDSLKVKPDFVLVDGPN-GLNLP 180

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
              ++++KGD++S SIA+ASI+AKVTRD++M   H ++P+YGFD H GYPT +H + +  
Sbjct: 181 LPQYSLVKGDTLSASIASASILAKVTRDKIMLEYHDEFPEYGFDRHKGYPTVEHLRALTR 240

Query: 191 KGPSCIHRLTFRPLRNL 207
            GP  IHR  F+P+++ 
Sbjct: 241 YGPCRIHRRDFKPVKDF 257


>gi|146310385|ref|YP_001175459.1| ribonuclease HII [Enterobacter sp. 638]
 gi|166991067|sp|A4W6S8|RNH2_ENT38 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|145317261|gb|ABP59408.1| Ribonuclease H [Enterobacter sp. 638]
          Length = 198

 Score =  160 bits (406), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 89/182 (48%), Positives = 116/182 (63%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L+++I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALFDEIKEKALAWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L+++P   LIDG   P  LP ++ AV+KGDS   
Sbjct: 72  RAEPEEIDELNILHATMLAMQRAVAGLKIVPEYVLIDGNRCPA-LPMRSLAVVKGDSRVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKVTRD  M      YP YGF  H GYPTA H + + E GP+  HR +F P+
Sbjct: 131 EISAASIIAKVTRDAEMAALDLSYPQYGFAQHKGYPTAFHLEKLSEHGPTEHHRRSFGPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|184157471|ref|YP_001845810.1| ribonuclease HII [Acinetobacter baumannii ACICU]
 gi|239503491|ref|ZP_04662801.1| ribonuclease HII [Acinetobacter baumannii AB900]
 gi|332875053|ref|ZP_08442892.1| ribonuclease HII [Acinetobacter baumannii 6014059]
 gi|183209065|gb|ACC56463.1| Ribonuclease HII [Acinetobacter baumannii ACICU]
 gi|193076842|gb|ABO11570.2| RNAse HII [Acinetobacter baumannii ATCC 17978]
 gi|323517386|gb|ADX91767.1| ribonuclease HII [Acinetobacter baumannii TCDC-AB0715]
 gi|332736753|gb|EGJ67741.1| ribonuclease HII [Acinetobacter baumannii 6014059]
          Length = 188

 Score =  160 bits (406), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 86/183 (46%), Positives = 120/183 (65%), Gaps = 5/183 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DE GRG L G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I   A+  SI+
Sbjct: 3   VAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWSIA 62

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--PCQAFAVIKGDSI 142
            A+H  ID+ NI +AT  A+  AVE L+  P+  ++DG  IP+ +  PC+A  ++ GD+ 
Sbjct: 63  EATHAEIDELNILQATFLAMQRAVEGLKTQPQKVIVDGNQIPKGIIIPCEA--IVGGDAS 120

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRDR M    ++YP +GF  H GYPT  H + I   G    HR ++ 
Sbjct: 121 HAEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYA 180

Query: 203 PLR 205
           P++
Sbjct: 181 PVK 183


>gi|264679353|ref|YP_003279260.1| ribonuclease HII/HIII [Comamonas testosteroni CNB-2]
 gi|299532312|ref|ZP_07045705.1| ribonuclease HII [Comamonas testosteroni S44]
 gi|262209866|gb|ACY33964.1| ribonuclease HII/HIII [Comamonas testosteroni CNB-2]
 gi|298719720|gb|EFI60684.1| ribonuclease HII [Comamonas testosteroni S44]
          Length = 237

 Score =  160 bits (406), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 88/180 (48%), Positives = 119/180 (66%), Gaps = 2/180 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DE GRG LAGPVV AA+ILD      G+NDSKK++  +RE LY++I + A+   I+
Sbjct: 19  VAGVDEAGRGPLAGPVVAAAVILDDLKPIAGLNDSKKLTANRREVLYDEIRAKALCFCIA 78

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS Q ID+ NI KATL A+  AV  L++ P   L+DG  +P+ +  QA A++KGDS+  
Sbjct: 79  QASVQEIDEINILKATLLAMRRAVMGLRLKPVLVLVDGNQLPQ-IDVQAEAIVKGDSLVQ 137

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKVTRDR       +YP YGF  H GY TA H Q ++  G +  HR +F P+
Sbjct: 138 AISAASILAKVTRDRWCERLDAQYPQYGFAGHKGYGTAAHLQALRAHGATAEHRRSFAPV 197


>gi|187924419|ref|YP_001896061.1| ribonuclease HII [Burkholderia phytofirmans PsJN]
 gi|238689609|sp|B2T5I0|RNH2_BURPP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|187715613|gb|ACD16837.1| Ribonuclease H [Burkholderia phytofirmans PsJN]
          Length = 248

 Score =  160 bits (406), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 88/183 (48%), Positives = 123/183 (67%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAII-SI 83
           V G+DE GRG LAGPVV AA+I DP+  +  G++DSK ++ KKR+ELY+KI   A+   I
Sbjct: 31  VCGVDEAGRGPLAGPVVAAAVIFDPSKPMIRGLDDSKVLTAKKRDELYDKIVDRALAYCI 90

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SA+ + ID  NI  AT+ A+  AVE L V+P    IDG   P  L  ++ AVI GD++ 
Sbjct: 91  ASATVEEIDSLNILHATMLAMKRAVEGLSVVPTLVKIDGNRCPT-LSVRSEAVIGGDALV 149

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+ +P YGF++H GY T +H + ++E GP   HR +F P
Sbjct: 150 KSISAASILAKVTRDRMLLELHQTHPVYGFNAHAGYGTPQHLKALREHGPCEHHRRSFAP 209

Query: 204 LRN 206
           +R 
Sbjct: 210 VRE 212


>gi|255506601|ref|ZP_05382240.1| ribonuclease HII [Chlamydia trachomatis D(s)2923]
 gi|289525074|emb|CBJ14544.1| ribonuclease HII [Chlamydia trachomatis Sweden2]
 gi|296434614|gb|ADH16792.1| ribonuclease HII [Chlamydia trachomatis E/150]
 gi|296438332|gb|ADH20485.1| ribonuclease HII [Chlamydia trachomatis E/11023]
          Length = 217

 Score =  160 bits (405), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 6/201 (2%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E+  FE +A+  E+    VAGIDE GRG LAGPVV  A IL    +  GI+DSKK++ K+
Sbjct: 13  EKSIFENQAI--EQGYSQVAGIDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQ 70

Query: 68  REELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           R  LYE +     +   +   S + ID+ NI +AT +A+  A+ +L+  P   L+DG  +
Sbjct: 71  RRYLYELLLEDPEVDCGVGVVSVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLFL 130

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  +P  +  +IKGD+ S+SIAAASIIAK  RD LMR  H +YP+YGFD H GY TA H 
Sbjct: 131 PHKIP--SLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHL 188

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
           Q +K  GP   HR +F P++ 
Sbjct: 189 QALKHFGPCVYHRKSFSPVKE 209


>gi|125718010|ref|YP_001035143.1| ribonuclease HII [Streptococcus sanguinis SK36]
 gi|166226664|sp|A3CN38|RNH2_STRSV RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|125497927|gb|ABN44593.1| Ribonuclease HII, putative [Streptococcus sanguinis SK36]
          Length = 254

 Score =  160 bits (405), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 91/203 (44%), Positives = 130/203 (64%), Gaps = 9/203 (4%)

Query: 12  FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
             LE M+R EK ++      +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  
Sbjct: 52  LRLEQMLRYEKELYKADYQAIAGIDEVGRGPLAGPVVAAAVILPPECKIKGLNDSKKIPK 111

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KK +E+Y+ +   A+ + +   +++ ID+ NI++AT  A+  A+  L + P   LID   
Sbjct: 112 KKHQEIYQAVLDKALAVGVGLMNNEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMK 171

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +  D+P ++  +IKGD+ SLSIAAASI+AKVTRD+LM    KK+P Y F  + GY T  H
Sbjct: 172 LDVDIPQES--IIKGDANSLSIAAASIVAKVTRDKLMADYDKKFPGYDFAKNAGYGTRSH 229

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
            Q ++  G + IHR TF P++++
Sbjct: 230 LQGLERSGVTPIHRKTFEPIKSM 252


>gi|293374717|ref|ZP_06621025.1| ribonuclease HII [Turicibacter sanguinis PC909]
 gi|325840606|ref|ZP_08167087.1| ribonuclease HII [Turicibacter sp. HGF1]
 gi|292646631|gb|EFF64633.1| ribonuclease HII [Turicibacter sanguinis PC909]
 gi|325490255|gb|EGC92588.1| ribonuclease HII [Turicibacter sp. HGF1]
          Length = 257

 Score =  160 bits (405), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 92/194 (47%), Positives = 125/194 (64%), Gaps = 4/194 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +R   +  +AG+DEVGRG LAGPV+ AA+IL  +   FGI+DSKK+S  KR   YE+
Sbjct: 63  ENELRYSGIELIAGVDEVGRGPLAGPVIAAAVILPADCWLFGIDDSKKLSESKRLYFYEQ 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQ 132
           I  +AI I I   + + ID++NI++AT  A+  AV  L   P+  L+D  S+P  D+P  
Sbjct: 123 IKKNAISIGIGICTSEEIDQYNIYEATKIAMERAVSKLNPKPQHLLLDAMSLPRLDIP-- 180

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGDS S+SIAAASIIAKVTRD  M+     YP YGF+ HVGY T +H   I++ G
Sbjct: 181 QTSIIKGDSKSVSIAAASIIAKVTRDAYMKKLGSAYPQYGFERHVGYGTKEHLLAIEQHG 240

Query: 193 PSCIHRLTFRPLRN 206
               HR +F P+R+
Sbjct: 241 IISEHRKSFEPIRS 254


>gi|121586247|ref|ZP_01676037.1| ribonuclease HII [Vibrio cholerae 2740-80]
 gi|121549513|gb|EAX59539.1| ribonuclease HII [Vibrio cholerae 2740-80]
          Length = 206

 Score =  160 bits (405), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 94/199 (47%), Positives = 123/199 (61%), Gaps = 7/199 (3%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E P FE+ A         +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S KK
Sbjct: 8   ELPPFEIPA-----GYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSEKK 62

Query: 68  REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L+ +I   A+  ++   S Q ID+ NI +AT+ A+  A+  L+V P   LIDG  IP
Sbjct: 63  RLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAIAGLRVQPDLVLIDGNKIP 122

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           + LP +A AV+KGD     I+AASIIAKV RD+ M    K+YP +GF  H GYPTA H  
Sbjct: 123 K-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAHFA 181

Query: 187 VIKEKGPSCIHRLTFRPLR 205
            I++ G    HR +F P++
Sbjct: 182 AIEQHGVIEQHRKSFGPVK 200


>gi|15642244|ref|NP_231877.1| ribonuclease HII [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|147673627|ref|YP_001217761.1| ribonuclease HII [Vibrio cholerae O395]
 gi|153817064|ref|ZP_01969731.1| ribonuclease HII [Vibrio cholerae NCTC 8457]
 gi|153820817|ref|ZP_01973484.1| ribonuclease HII [Vibrio cholerae B33]
 gi|227082370|ref|YP_002810921.1| ribonuclease HII [Vibrio cholerae M66-2]
 gi|229507680|ref|ZP_04397185.1| ribonuclease HII [Vibrio cholerae BX 330286]
 gi|229512125|ref|ZP_04401604.1| ribonuclease HII [Vibrio cholerae B33]
 gi|229519260|ref|ZP_04408703.1| ribonuclease HII [Vibrio cholerae RC9]
 gi|229607184|ref|YP_002877832.1| ribonuclease HII [Vibrio cholerae MJ-1236]
 gi|254849376|ref|ZP_05238726.1| ribonuclease HII [Vibrio cholerae MO10]
 gi|255747057|ref|ZP_05421002.1| ribonuclease HII [Vibrio cholera CIRS 101]
 gi|262161398|ref|ZP_06030508.1| ribonuclease HII [Vibrio cholerae INDRE 91/1]
 gi|298500379|ref|ZP_07010184.1| ribonuclease HII [Vibrio cholerae MAK 757]
 gi|12644303|sp|P52021|RNH2_VIBCH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|172047613|sp|A5F626|RNH2_VIBC3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254808006|sp|C3LQ18|RNH2_VIBCM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|9656806|gb|AAF95390.1| ribonuclease HII [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|126512332|gb|EAZ74926.1| ribonuclease HII [Vibrio cholerae NCTC 8457]
 gi|126521609|gb|EAZ78832.1| ribonuclease HII [Vibrio cholerae B33]
 gi|146315510|gb|ABQ20049.1| ribonuclease HII [Vibrio cholerae O395]
 gi|227010258|gb|ACP06470.1| ribonuclease HII [Vibrio cholerae M66-2]
 gi|227014142|gb|ACP10352.1| ribonuclease HII [Vibrio cholerae O395]
 gi|229343949|gb|EEO08924.1| ribonuclease HII [Vibrio cholerae RC9]
 gi|229352090|gb|EEO17031.1| ribonuclease HII [Vibrio cholerae B33]
 gi|229355185|gb|EEO20106.1| ribonuclease HII [Vibrio cholerae BX 330286]
 gi|229369839|gb|ACQ60262.1| ribonuclease HII [Vibrio cholerae MJ-1236]
 gi|254845081|gb|EET23495.1| ribonuclease HII [Vibrio cholerae MO10]
 gi|255735459|gb|EET90859.1| ribonuclease HII [Vibrio cholera CIRS 101]
 gi|262028709|gb|EEY47363.1| ribonuclease HII [Vibrio cholerae INDRE 91/1]
 gi|297541072|gb|EFH77126.1| ribonuclease HII [Vibrio cholerae MAK 757]
          Length = 206

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/199 (47%), Positives = 123/199 (61%), Gaps = 7/199 (3%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E P FE+ A         +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S KK
Sbjct: 8   ELPPFEIPA-----GYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSEKK 62

Query: 68  REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L+ +I   A+  ++   S Q ID+ NI +AT+ A+  AV  L++ P   LIDG  IP
Sbjct: 63  RLALFPEIQVKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNKIP 122

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           + LP +A AV+KGD     I+AASIIAKV RD+ M    K+YP +GF  H GYPTA H  
Sbjct: 123 K-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAHFA 181

Query: 187 VIKEKGPSCIHRLTFRPLR 205
            I++ G    HR +F P++
Sbjct: 182 AIEQHGVIEQHRKSFGPVK 200


>gi|296435545|gb|ADH17719.1| ribonuclease HII [Chlamydia trachomatis G/9768]
 gi|296437405|gb|ADH19566.1| ribonuclease HII [Chlamydia trachomatis G/11074]
 gi|297139904|gb|ADH96662.1| ribonuclease HII [Chlamydia trachomatis G/9301]
          Length = 217

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 6/201 (2%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E+  FE +A+  E+    VAGIDE GRG LAGPVV  A IL    +  GI+DSKK++ K+
Sbjct: 13  EKSIFENQAI--EQGYSQVAGIDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQ 70

Query: 68  REELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           R  LYE +     +   +   S + ID+ NI +AT +A+  A+ +L+  P   L+DG  +
Sbjct: 71  RRYLYELLLEDPEVDCGVGVVSVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLFL 130

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  +P  +  +IKGD+ S+SIAAASIIAK  RD LMR  H +YP+YGFD H GY TA H 
Sbjct: 131 PHKVP--SLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHL 188

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
           Q +K  GP   HR +F P++ 
Sbjct: 189 QALKHFGPCVYHRKSFSPVKE 209


>gi|224370178|ref|YP_002604342.1| RnhB [Desulfobacterium autotrophicum HRM2]
 gi|223692895|gb|ACN16178.1| RnhB [Desulfobacterium autotrophicum HRM2]
          Length = 197

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 89/178 (50%), Positives = 118/178 (66%), Gaps = 2/178 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DE GRG LAGPVV AA++LD      GI DSKK+S KKRE LY+ I   A+ + + 
Sbjct: 16  IAGVDEAGRGPLAGPVVSAAVVLDDGFPDHGIMDSKKLSPKKRELLYDVIMDKALGVCVG 75

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            ASH  ID+ NI +A+L ++  AV  L + P   LIDG +   D   Q   ++KGD++S+
Sbjct: 76  IASHHEIDRINILRASLLSMRRAVNGLPLKPDYLLIDG-TFFIDSSIQQQVIVKGDALSV 134

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           SIAAASI+AKVTRDR+M    + YP YGF  H GYPT  H+Q + E GPS +HR +F+
Sbjct: 135 SIAAASIVAKVTRDRIMVDMDQLYPGYGFARHKGYPTKAHKQALVELGPSPVHRYSFK 192


>gi|68249618|ref|YP_248730.1| ribonuclease HII [Haemophilus influenzae 86-028NP]
 gi|81335953|sp|Q4QLM7|RNH2_HAEI8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|68057817|gb|AAX88070.1| ribonuclease HII [Haemophilus influenzae 86-028NP]
          Length = 197

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 118/182 (64%), Gaps = 1/182 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L E+I   A+  ++ 
Sbjct: 11  IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLALAEEIKEKALAWALG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI +A+L A+  AV++L++ P   L+DG  IP+DL   A AV+KGD++  
Sbjct: 71  RAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLAIPAQAVVKGDNLVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR +F P+
Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRRSFAPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KK 192


>gi|330872713|gb|EGH06862.1| ribonuclease HII [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 217

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 116/181 (64%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84
           VAG+DEVGRG L G VV AA+ILDP    FG+NDSKK++  KRE+L+ +I   A+   I+
Sbjct: 14  VAGVDEVGRGPLCGAVVTAAVILDPARPIFGLNDSKKLTEAKREKLFVEIQEKALCWFIA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AVE L + P+ ALIDG   P+ L   +  V+KGDS   
Sbjct: 74  RAEVEEIDQLNILHATMLAMKRAVEGLNITPKLALIDGNRCPQ-LSVPSAPVVKGDSKVP 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P+
Sbjct: 133 AIAAASILAKVSRDREMAALELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFGPV 192

Query: 205 R 205
           R
Sbjct: 193 R 193


>gi|169833197|ref|YP_001694596.1| ribonuclease HII [Streptococcus pneumoniae Hungary19A-6]
 gi|238688296|sp|B1IBW1|RNH2_STRPI RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|168995699|gb|ACA36311.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 259

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/204 (45%), Positives = 130/204 (63%), Gaps = 9/204 (4%)

Query: 11  HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           +  LE+M+  EK ++      +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKKI 
Sbjct: 51  NLRLESMLSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            KK  E+++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID  
Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +  DLP    ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAK
Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAK 228

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H + + + G + IHR +F P+++L
Sbjct: 229 HLEGLTKLGATPIHRTSFEPVKSL 252


>gi|254492019|ref|ZP_05105197.1| ribonuclease HII [Methylophaga thiooxidans DMS010]
 gi|224462834|gb|EEF79105.1| ribonuclease HII [Methylophaga thiooxydans DMS010]
          Length = 190

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/181 (49%), Positives = 117/181 (64%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG LAGPVV AA+ILDP+N   G+ DSKK+S K+RE L   I   A+  ++ 
Sbjct: 7   VAGVDEVGRGPLAGPVVTAAVILDPDNPIEGLADSKKLSEKRREFLVPLIKEHALAWAMG 66

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI +A+L A+  AVE L + P   L+DG   P DL C+   VIKGD    
Sbjct: 67  RAEPEEIDQINILQASLLAMKRAVEALSITPGHVLVDGIHAP-DLNCKTTTVIKGDQKEP 125

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKV RDR M      YP YGF  H GYPT +HQ+ + + G + IHR +F P+
Sbjct: 126 AIAAASILAKVARDREMHEMDLMYPGYGFAQHKGYPTKQHQKALADLGVTDIHRRSFSPV 185

Query: 205 R 205
           +
Sbjct: 186 Q 186


>gi|148828223|ref|YP_001292976.1| ribonuclease HII [Haemophilus influenzae PittGG]
 gi|166225191|sp|A5UII7|RNH2_HAEIG RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|148719465|gb|ABR00593.1| ribonuclease HII [Haemophilus influenzae PittGG]
          Length = 197

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 118/182 (64%), Gaps = 1/182 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L ++I   A+  ++ 
Sbjct: 11  IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLALADEIKEKALAWALG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI +A+L A+  AV++L++ P   L+DG  IP+DL   A AV+KGDSI  
Sbjct: 71  RAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLAIPAQAVVKGDSIVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR +F P+
Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAEFGALPQHRRSFAPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KK 192


>gi|119384834|ref|YP_915890.1| ribonuclease H [Paracoccus denitrificans PD1222]
 gi|189043634|sp|A1B3V0|RNH2_PARDP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|119374601|gb|ABL70194.1| RNase HII [Paracoccus denitrificans PD1222]
          Length = 210

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 84/195 (43%), Positives = 122/195 (62%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P + LE          VAG+DEVGRG LAGPV  AA+ILD   IP G+NDSKK++ K+RE
Sbjct: 4   PDYSLEEAALRSGARFVAGVDEVGRGPLAGPVTAAAVILDAGCIPEGLNDSKKLTAKRRE 63

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L E + +    ++  AS + ID+ NI +A+  A+  A+  L+  P   L+DG  +P DL
Sbjct: 64  ALAELVMARCDWAVGHASVEEIDRLNILRASHLAMCRAIAGLRQRPCLVLVDGNMLPRDL 123

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                AV+ GD+  LSIAAASI+AK+ RDR+M    +++P YG++++ GYPT  H+Q + 
Sbjct: 124 DLPGQAVVGGDARCLSIAAASILAKLLRDRIMVDLAQQHPGYGWEANAGYPTPAHRQALL 183

Query: 190 EKGPSCIHRLTFRPL 204
           + G +  HR +F P+
Sbjct: 184 DLGVTPYHRRSFAPV 198


>gi|89070017|ref|ZP_01157348.1| ribonuclease HII [Oceanicola granulosus HTCC2516]
 gi|89044354|gb|EAR50492.1| ribonuclease HII [Oceanicola granulosus HTCC2516]
          Length = 211

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 82/196 (41%), Positives = 124/196 (63%), Gaps = 2/196 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           FE  A+  ++    +AG+DEVGRG LAGPV  AA++LDP  IP G+ DSK +   +RE L
Sbjct: 9   FETRAL--QRGFARIAGVDEVGRGPLAGPVTAAAVVLDPARIPEGLADSKALPRARREAL 66

Query: 72  YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             ++   A ++++  S   ID HNI +A+  A+  A+  L+     ALIDG  +P DL C
Sbjct: 67  DAELREVACVAVAHCSVAEIDTHNILRASHIAMCRALAALEQTCDHALIDGNMLPRDLAC 126

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              A++KGD+  LSIAAASI+AKV RDR+M    +++P YG+++++GY T  H+  ++  
Sbjct: 127 SGEALVKGDARCLSIAAASIVAKVARDRIMVDLAQQHPGYGWETNMGYGTKGHRSALQNL 186

Query: 192 GPSCIHRLTFRPLRNL 207
           G +  HR +F P+ N+
Sbjct: 187 GVTPHHRRSFAPIYNI 202


>gi|160945102|ref|ZP_02092328.1| hypothetical protein FAEPRAM212_02621 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442833|gb|EDP19838.1| hypothetical protein FAEPRAM212_02621 [Faecalibacterium prausnitzii
           M21/2]
 gi|295105649|emb|CBL03193.1| RNase HII [Faecalibacterium prausnitzii SL3/3]
          Length = 215

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 115/193 (59%), Gaps = 2/193 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P +  +A VR +     AG+DE GRG L GPV VAA ILDP N  +GINDSKK++ KKRE
Sbjct: 12  PLYAFDAEVRSQYGC-FAGVDEAGRGPLCGPVCVAACILDPENPVYGINDSKKLTEKKRE 70

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            L+++I   A+   I     + ID+ NI  AT+  +  AVE L ++P   L+DG   P  
Sbjct: 71  ALFDEICEKALAYRIIFVGPEVIDRENILNATMGGMQQAVEELDIVPNLVLVDGNRTPAG 130

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L   A  V+KGD+ S SI AAS++AKV+RDR M    K+YP Y    H GYPT  H ++I
Sbjct: 131 LQIPAQPVVKGDATSASIGAASVLAKVSRDRYMLELDKQYPQYQLAKHKGYPTKLHYELI 190

Query: 189 KEKGPSCIHRLTF 201
            + G    +R +F
Sbjct: 191 AQYGIQPFYRRSF 203


>gi|330807795|ref|YP_004352257.1| ribonuclease HII [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327375903|gb|AEA67253.1| ribonuclease HII [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 214

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/195 (47%), Positives = 122/195 (62%), Gaps = 6/195 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F L A V E     VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE+L
Sbjct: 12  FNLVAEVEEL----VAGVDEVGRGPLCGAVVTAAVILDPKRPILGLNDSKKLTEARREKL 67

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y++I   A+   I+ A  + ID+ NI  AT+ A+  AV+ L + P+ A+IDG   P+ L 
Sbjct: 68  YDEICEKALSWCIARAEVEEIDELNILHATMLAMQRAVQGLHITPKLAMIDGNRCPK-LS 126

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            +A AVI+GD    +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +  
Sbjct: 127 MRAEAVIQGDGKVPAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALAR 186

Query: 191 KGPSCIHRLTFRPLR 205
            GP+ IHR +F P+R
Sbjct: 187 LGPTPIHRRSFAPVR 201


>gi|253988139|ref|YP_003039495.1| ribonuclease HII [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253779589|emb|CAQ82750.1| ribonuclease HII [Photorhabdus asymbiotica]
          Length = 196

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/182 (49%), Positives = 117/182 (64%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP+    G+ DSKK+S K+REELY +IT  A+  S+ 
Sbjct: 12  IAGVDEVGRGPLVGAVVTAAVILDPSRPIAGLADSKKLSEKRREELYLEITEKALCWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L + P   LIDG   PE LP  A AVIKGD +  
Sbjct: 72  RAEPEEIDQLNILHATMLAMQRAVAGLSISPEYVLIDGNRCPE-LPMPAQAVIKGDGLVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M    + +P+YGF  H GYPTA H + +   G +  HR +F P+
Sbjct: 131 EISAASIVAKVTRDREMVELDQLFPEYGFAKHKGYPTALHLEKLVLLGATKHHRKSFAPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|312793164|ref|YP_004026087.1| ribonuclease h [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180304|gb|ADQ40474.1| Ribonuclease H [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 206

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 131/203 (64%), Gaps = 4/203 (1%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           + +  +FE+E  +  +    + G+DE GRG LAGPV  AA+++D   I  G+ DSKK++ 
Sbjct: 4   LEDENYFEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKKIIEGVRDSKKLTP 63

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KKRE+L+++I   +I  S++    + ID+ NI+ AT  A+ +A+ENL++ P   L+DG  
Sbjct: 64  KKREKLFDEIIKESIAYSVAMVDSKIIDEININNATFLAMKNAIENLKIEPDIVLVDGYE 123

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           IP +L     A+IKGD  S SIA ASI+AKV+RDR +     KYP Y F+ H GY T +H
Sbjct: 124 IP-NLSFNQMAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPVYKFEKHKGYGTKEH 182

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
            +++++ GP  IHR++F  L+N+
Sbjct: 183 IEILQKYGPCEIHRISF--LKNI 203


>gi|237800157|ref|ZP_04588618.1| ribonuclease HII [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023014|gb|EGI03071.1| ribonuclease HII [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 217

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 116/181 (64%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE+L+ +I   A+   I+
Sbjct: 14  VAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLFVEIQEKALCWFIA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AVE L V P+ ALIDG   P+ L   +  V+KGDS   
Sbjct: 74  RAEVEEIDQLNILHATMLAMKRAVEGLSVTPKLALIDGNRCPQ-LSVPSAPVVKGDSKVP 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKV+RDR M      YP YG   H GYPTA H + +   GP+ IHR +F P+
Sbjct: 133 AIAAASILAKVSRDREMAALELVYPGYGIGGHKGYPTAVHLEALARLGPTPIHRRSFGPV 192

Query: 205 R 205
           R
Sbjct: 193 R 193


>gi|269101953|ref|ZP_06154650.1| ribonuclease HII [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161851|gb|EEZ40347.1| ribonuclease HII [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 201

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/197 (47%), Positives = 121/197 (61%), Gaps = 5/197 (2%)

Query: 13  ELEAMVR-EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           ELE  V  E N+  +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L
Sbjct: 4   ELEPFVYPEANL--IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLSEKKRNAL 61

Query: 72  YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +++I   A+  S+       ID+ NI +AT+ A+  AV  L + P   LIDG   PE LP
Sbjct: 62  FDEIKEKALAWSLGRCEADEIDELNILQATMVAMQRAVAGLNITPDFVLIDGNKTPE-LP 120

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             A AV+KGD     I+AASI+AKVTRDR M     +YP +GF  H GYPT  H   ++E
Sbjct: 121 MAAQAVVKGDLRVAEISAASILAKVTRDREMDELDAQYPQFGFAKHKGYPTKAHFAALEE 180

Query: 191 KGPSCIHRLTFRPLRNL 207
            G    HR +F+P++ +
Sbjct: 181 HGVIEQHRKSFKPVKRI 197


>gi|322515100|ref|ZP_08068107.1| ribonuclease HII [Actinobacillus ureae ATCC 25976]
 gi|322118906|gb|EFX91088.1| ribonuclease HII [Actinobacillus ureae ATCC 25976]
          Length = 197

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 89/183 (48%), Positives = 119/183 (65%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L E+I + A+  S+ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLLLAEEIKAKALCWSLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L + P   L+DG  IP  LP  A AVIKGDS+  
Sbjct: 73  RAEPEEIDQLNILHATMLAMQRAVAGLNIWPDFVLVDGNHIP-TLPMPAQAVIKGDSLVA 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M    K+YP+YGF  H GYPT  H + +++ G +  HR +F P+
Sbjct: 132 EISAASILAKVARDQEMDELDKQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKSFAPV 191

Query: 205 RNL 207
           + +
Sbjct: 192 KKI 194


>gi|307708682|ref|ZP_07645145.1| ribonuclease HII [Streptococcus mitis NCTC 12261]
 gi|307615256|gb|EFN94466.1| ribonuclease HII [Streptococcus mitis NCTC 12261]
          Length = 259

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/194 (45%), Positives = 126/194 (64%), Gaps = 3/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  + ++ +  +AG+DEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK  E+++ 
Sbjct: 61  EKELYKQGLTMIAGVDEVGRGPLAGPVVAAAVILPKNCKITGLNDSKKIPKKKHLEIFQA 120

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DLP   
Sbjct: 121 VQDQALSIGIGIMDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLPISQ 178

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAKH + +K+ G 
Sbjct: 179 TSIIKGDANSLSIAAASIVAKVTRDELMKEFDQQFPGYDFAANAGYGTAKHLEGLKKIGV 238

Query: 194 SCIHRLTFRPLRNL 207
           + IHR +F P+++L
Sbjct: 239 TPIHRTSFEPVKSL 252


>gi|229522192|ref|ZP_04411609.1| ribonuclease HII [Vibrio cholerae TM 11079-80]
 gi|229341117|gb|EEO06122.1| ribonuclease HII [Vibrio cholerae TM 11079-80]
          Length = 206

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/199 (46%), Positives = 122/199 (61%), Gaps = 7/199 (3%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E P FE+ A         +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S KK
Sbjct: 8   ELPPFEIPA-----GYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSEKK 62

Query: 68  REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L+ +I   A+  ++   S Q ID+ NI +AT+ A+  AV  L++ P   LIDG   P
Sbjct: 63  RLALFPEIQEKALAWAVGRCSTQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNKTP 122

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           + LP +A AV+KGD     I+AASIIAKV RD+ M    K+YP +GF  H GYPTA H  
Sbjct: 123 K-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAHFA 181

Query: 187 VIKEKGPSCIHRLTFRPLR 205
            I++ G    HR +F P++
Sbjct: 182 AIEQHGVIEQHRKSFGPVK 200


>gi|153825313|ref|ZP_01977980.1| ribonuclease HII [Vibrio cholerae MZO-2]
 gi|183179455|ref|ZP_02957666.1| ribonuclease HII [Vibrio cholerae MZO-3]
 gi|229513888|ref|ZP_04403350.1| ribonuclease HII [Vibrio cholerae TMA 21]
 gi|297580889|ref|ZP_06942814.1| ribonuclease HII [Vibrio cholerae RC385]
 gi|149740997|gb|EDM55066.1| ribonuclease HII [Vibrio cholerae MZO-2]
 gi|183012866|gb|EDT88166.1| ribonuclease HII [Vibrio cholerae MZO-3]
 gi|229349069|gb|EEO14026.1| ribonuclease HII [Vibrio cholerae TMA 21]
 gi|297534715|gb|EFH73551.1| ribonuclease HII [Vibrio cholerae RC385]
          Length = 206

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/199 (47%), Positives = 122/199 (61%), Gaps = 7/199 (3%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E P FE+ A         +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S KK
Sbjct: 8   ELPPFEIPA-----GYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSEKK 62

Query: 68  REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L+ +I   A+  ++   S Q ID+ NI +AT+ A+  AV  L++ P   LIDG  IP
Sbjct: 63  RLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNKIP 122

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           + LP  A AV+KGD     I+AASIIAKV RD+ M    K+YP +GF  H GYPTA H  
Sbjct: 123 K-LPMAAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAHFA 181

Query: 187 VIKEKGPSCIHRLTFRPLR 205
            I++ G    HR +F P++
Sbjct: 182 AIEQHGVIEQHRKSFGPVK 200


>gi|259907556|ref|YP_002647912.1| Ribonuclease HII [Erwinia pyrifoliae Ep1/96]
 gi|224963178|emb|CAX54662.1| Ribonuclease HII [Erwinia pyrifoliae Ep1/96]
 gi|283477396|emb|CAY73312.1| rnhB [Erwinia pyrifoliae DSM 12163]
          Length = 207

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/184 (47%), Positives = 117/184 (63%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
           W +AG+DEVGRG L G VV AA+ILDP+    G+ DSKK+S K+R  LY++I   A+  S
Sbjct: 10  WLIAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLGDSKKLSEKRRLALYDEIKDRALSWS 69

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A  + ID+ NI  AT+ A+  AV  L + P   LIDG   P+ L   + AV+KGDS+
Sbjct: 70  LGRAEPEEIDRLNILHATMLAMQRAVAGLHLTPDFVLIDGNRCPQ-LAMPSRAVVKGDSL 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRDR M    ++YP YGF  H GYPTA H + +   G +  HR +F 
Sbjct: 129 VPEISAASIMAKVTRDREMCELDQQYPQYGFARHKGYPTAVHMEKLARFGVTPQHRRSFA 188

Query: 203 PLRN 206
           P+RN
Sbjct: 189 PVRN 192


>gi|146308060|ref|YP_001188525.1| ribonuclease HII [Pseudomonas mendocina ymp]
 gi|166226640|sp|A4XWS7|RNH2_PSEMY RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|145576261|gb|ABP85793.1| Ribonuclease H [Pseudomonas mendocina ymp]
          Length = 208

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/183 (48%), Positives = 117/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE L+++I   A+   I+
Sbjct: 14  VAGVDEVGRGPLCGAVVTAAVILDPLRPIIGLNDSKKLTEARREVLFDEIREKALAWCIA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AVE L V P+ ALIDG   P  L   +  V+KGDS   
Sbjct: 74  RAEVEEIDRLNILHATMLAMQRAVEGLSVTPKLALIDGNRCPR-LTVPSAPVVKGDSRVP 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKV+RDR M    + YP YG   H GYPT  H + ++  GP+ IHR +F P+
Sbjct: 133 AIAAASILAKVSRDREMLEMDRLYPGYGIAGHKGYPTPVHLEALQRLGPTPIHRRSFAPV 192

Query: 205 RNL 207
           R L
Sbjct: 193 RAL 195


>gi|312878029|ref|ZP_07737967.1| Ribonuclease H [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795181|gb|EFR11572.1| Ribonuclease H [Caldicellulosiruptor lactoaceticus 6A]
          Length = 206

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/198 (42%), Positives = 129/198 (65%), Gaps = 4/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           +FE+E  +  +    + G+DE GRG LAGPV  AA+++D   I  G+ DSKK++ KKRE+
Sbjct: 9   YFEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREK 68

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L+++I   +I  S++    + ID+ NI+ AT  A+ +A+ENL++ P   L+DG  IP +L
Sbjct: 69  LFDEIIKESIAYSVAMVDSKIIDEININNATFLAMKNAIENLKIEPDIVLVDGYEIP-NL 127

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                A+IKGD  S SIA ASI+AKV+RDR +     KYP Y F+ H GY T +H ++++
Sbjct: 128 SFNQMAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPVYKFEKHKGYGTKEHIEILQ 187

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + GP  IHR++F  L+N+
Sbjct: 188 KYGPCEIHRISF--LKNI 203


>gi|212639582|ref|YP_002316102.1| ribonuclease HII [Anoxybacillus flavithermus WK1]
 gi|226736811|sp|B7GGD5|RNH2_ANOFW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|212561062|gb|ACJ34117.1| Ribonuclease HII [Anoxybacillus flavithermus WK1]
          Length = 259

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/204 (45%), Positives = 128/204 (62%), Gaps = 7/204 (3%)

Query: 8   ERPHF----ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           ER  F    + E  + +K +  +AG+DEVGRG LAGPVV AA+IL  +     ++DSKK+
Sbjct: 52  ERERFLHMLQYEQALYDKGIRYIAGVDEVGRGPLAGPVVAAAVILPKDVYLPHVDDSKKL 111

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           S  KRE+L+  I   A+ I I   S + ID+ NI++AT  A+  AV  L + P   LID 
Sbjct: 112 SETKREQLFSIIQQMALAIGIGIVSAREIDERNIYEATKKAMMQAVHALAIAPEHLLIDA 171

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
             IP  +P    ++IKGD+ S+SIAA+SIIAKVTRDR+M+   +KYP YGF+ H+GY T 
Sbjct: 172 MHIPLSIP--QTSIIKGDAHSVSIAASSIIAKVTRDRMMKQLGEKYPQYGFEKHMGYGTK 229

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRN 206
           +H Q I+  G    HR +F P+R 
Sbjct: 230 EHLQAIERYGVIEEHRRSFAPIRE 253


>gi|84389778|ref|ZP_00991330.1| ribonuclease HII [Vibrio splendidus 12B01]
 gi|84376879|gb|EAP93753.1| ribonuclease HII [Vibrio splendidus 12B01]
          Length = 206

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 118/182 (64%), Gaps = 2/182 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85
           AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KKR  L+ +I   A+  S+  
Sbjct: 22  AGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALFPEIKEKALAWSVGR 81

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S Q ID+ NI +AT+ A+  A+  L V P  ALIDG  +PE LP    A++KGD     
Sbjct: 82  CSPQEIDEWNILQATMVAMQRAIAGLSVQPDMALIDGNRVPE-LPMDGLAIVKGDLRVAE 140

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASIIAKV RD+ M    K +P++GF  H GYPT  H + I++ G +  +R +F+P++
Sbjct: 141 ISAASIIAKVVRDQEMEELDKLHPEFGFAQHKGYPTKAHFEAIEKHGVTEHYRKSFKPVK 200

Query: 206 NL 207
            +
Sbjct: 201 RI 202


>gi|262404580|ref|ZP_06081135.1| ribonuclease HII [Vibrio sp. RC586]
 gi|262349612|gb|EEY98750.1| ribonuclease HII [Vibrio sp. RC586]
          Length = 206

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/199 (46%), Positives = 121/199 (60%), Gaps = 2/199 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           ++P  EL A         +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S KK
Sbjct: 3   KKPSIELPAFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSEKK 62

Query: 68  REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L+ +I   A+  S+   S Q ID+ NI +AT+ A+  AV  L V P   L+DG  +P
Sbjct: 63  RLALFPEIQEKALAWSVGRCSPQEIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNKVP 122

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           + LP +A AV+KGD     I+AASIIAKV RD  M    K+YP +GF  H GYPTA H  
Sbjct: 123 K-LPMEAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAVHFA 181

Query: 187 VIKEKGPSCIHRLTFRPLR 205
            I++ G    HR +F P++
Sbjct: 182 AIEQHGVIEQHRKSFGPVK 200


>gi|323351561|ref|ZP_08087215.1| ribonuclease HII [Streptococcus sanguinis VMC66]
 gi|322122047|gb|EFX93773.1| ribonuclease HII [Streptococcus sanguinis VMC66]
          Length = 254

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/204 (44%), Positives = 130/204 (63%), Gaps = 9/204 (4%)

Query: 11  HFELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
              LE M+R EK ++      +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI 
Sbjct: 51  ELRLEQMLRYEKELYKTGFRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIP 110

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            KK +E+Y+ +   A+ + I    ++ ID+ NI++AT  A+  A+  L + P   LID  
Sbjct: 111 KKKHQEIYQAVLDKALAVGIGLIDNEIIDQVNIYEATKLAMKDALSKLCLKPDYLLIDAM 170

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +  ++P ++  +IKGD+ SLSIAAASI+AKVTRD+LM    KK+P Y F  + GY T +
Sbjct: 171 KLDVEIPQES--IIKGDANSLSIAAASIVAKVTRDKLMTDYDKKFPGYDFSQNAGYGTMR 228

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H Q ++  G + IHR TF P++++
Sbjct: 229 HLQGLERNGVTPIHRKTFEPIKSM 252


>gi|223998909|ref|XP_002289127.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220974335|gb|EED92664.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 183

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/185 (49%), Positives = 120/185 (64%), Gaps = 7/185 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK-REELYEKITSSAII--S 82
           V G+DE GRG LAGPVV AA I+ P NI  G+ DSKKI+ ++ RE LYE++ SS  I  +
Sbjct: 1   VVGVDEAGRGPLAGPVVAAAAIV-PTNIE-GVIDSKKITKEEDRERLYEELVSSPGIRYA 58

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS--ALIDGRSIPEDLPCQAFAVIKGD 140
           ++  S Q ID+ NI +ATL+ +  AV+ +  +     ALIDG  IP+D+PC + ++ KGD
Sbjct: 59  VAIVSAQRIDEINILQATLEGMRMAVQGVMDMDSYYFALIDGNKIPKDMPCSSESITKGD 118

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
               SI AASIIAKVTRDRLM     KYP+Y    H GYPT  H   +++ G S IHR T
Sbjct: 119 GREYSIGAASIIAKVTRDRLMHEYDAKYPEYNLKQHKGYPTVAHMSAVRKHGASLIHRRT 178

Query: 201 FRPLR 205
           F PL+
Sbjct: 179 FAPLK 183


>gi|116514255|ref|YP_813161.1| ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|122275013|sp|Q049Z9|RNH2_LACDB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|116093570|gb|ABJ58723.1| RNase HII [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 256

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/193 (46%), Positives = 120/193 (62%), Gaps = 7/193 (3%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           EK+ W     V G+DEVGRG LAGPVV AA+IL  +     +NDSKK+S +KR  LY KI
Sbjct: 59  EKDFWAKGQLVGGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLALYPKI 118

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
              A+ + +    ++ ID+ NI++A   A+  AVE L   P   L+D  ++P DLP    
Sbjct: 119 LQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSTRPDVLLVDAMNVPVDLP--QL 176

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            +IKGD+ S SIAAASI+AKV RD LM    + YPDY FD + GY T  H + +++ GP+
Sbjct: 177 ELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALRKYGPT 236

Query: 195 CIHRLTFRPLRNL 207
            IHRLTF P+  +
Sbjct: 237 PIHRLTFSPVSEM 249


>gi|237802463|ref|YP_002887657.1| ribonuclease HII [Chlamydia trachomatis B/Jali20/OT]
 gi|231273697|emb|CAX10475.1| ribonuclease HII [Chlamydia trachomatis B/Jali20/OT]
          Length = 217

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 123/201 (61%), Gaps = 6/201 (2%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E+  FE +A+  E+    VAG+DE GRG LAGPVV  A IL    +  GI+DSKK+  K+
Sbjct: 13  EKSIFENQAI--EQGYSRVAGVDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLIPKQ 70

Query: 68  REELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           R  LYE +     +   +   S + ID+ NI +AT +A+  A+ +LQ  P   L+DG  +
Sbjct: 71  RRYLYELLLEDPEVDCGVGVVSVERIDEINILEATKEAMVQAIASLQSTPDFLLVDGLFL 130

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  +P  +  +IKGD+ S+SIAAASIIAK  RD LMR  H +YP+YGFD H GY TA H 
Sbjct: 131 PHKVP--SLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHL 188

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
           Q +K  GP   HR +F P++ 
Sbjct: 189 QALKHFGPCVYHRKSFSPVKE 209


>gi|81428604|ref|YP_395604.1| ribonuclease HII (RNase HII) [Lactobacillus sakei subsp. sakei 23K]
 gi|97182876|sp|Q38WY6|RNH2_LACSS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|78610246|emb|CAI55295.1| Ribonuclease HII (RNase HII) [Lactobacillus sakei subsp. sakei 23K]
          Length = 253

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 126/192 (65%), Gaps = 7/192 (3%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           EK +WP    VAGIDEVGRG LAGPVV AA+IL  +   + +NDSK++S K ++ELY +I
Sbjct: 62  EKALWPDYPLVAGIDEVGRGPLAGPVVTAAVILPHDFDLWQVNDSKQLSFKLKQELYREI 121

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
            + A+ +SI  AS + ID  NI+ AT  A+  AV  L   P   L+D  ++P D+P +  
Sbjct: 122 MAQAVSVSIGIASPERIDTENIYHATELAMGEAVAGLDKQPDYLLVDAMTVPTDIPQEKL 181

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
             IKGD+ S+SIA+ASI+AKV RD+LM    ++YP Y   +++GY TAKH   + E G +
Sbjct: 182 --IKGDARSISIASASIVAKVIRDQLMINYDQQYPGYDLANNMGYGTAKHLAGLAELGVT 239

Query: 195 CIHRLTFRPLRN 206
            IHR +F P++N
Sbjct: 240 PIHRRSFSPVQN 251


>gi|319776686|ref|YP_004139174.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Haemophilus
           influenzae F3047]
 gi|329124205|ref|ZP_08252752.1| ribonuclease HII [Haemophilus aegyptius ATCC 11116]
 gi|317451277|emb|CBY87511.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Haemophilus
           influenzae F3047]
 gi|327467630|gb|EGF13128.1| ribonuclease HII [Haemophilus aegyptius ATCC 11116]
          Length = 197

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 118/182 (64%), Gaps = 1/182 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L E+I   A+  ++ 
Sbjct: 11  IAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKALAWALG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI +A+L A+  AV++L++ P   LIDG  IP+DL   A AV+KGDSI  
Sbjct: 71  RAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLIDGNKIPKDLDIPAQAVVKGDSIVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR +F P+
Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRRSFAPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KK 192


>gi|312127966|ref|YP_003992840.1| ribonuclease h [Caldicellulosiruptor hydrothermalis 108]
 gi|311777985|gb|ADQ07471.1| Ribonuclease H [Caldicellulosiruptor hydrothermalis 108]
          Length = 206

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 86/198 (43%), Positives = 129/198 (65%), Gaps = 4/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           +FE+E  +  +    + G+DE GRG LAGPV  AA+++D   I  G+ DSKK++ KKRE+
Sbjct: 9   YFEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREK 68

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L+E+I   +I  S++    + ID+ NI+ AT  A+ +A+ENL++ P   L+DG  IP +L
Sbjct: 69  LFEEIIKESIAYSVAMVDSKIIDEININNATFLAMKNAIENLKIEPDIVLVDGYEIP-NL 127

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                A+IKGD  S SIA ASI+AKV+RDR +     KYP Y F+ H GY T +H ++++
Sbjct: 128 GFNQRAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPLYKFEKHKGYGTKEHIEILQ 187

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + GP  IHR++F  L+N+
Sbjct: 188 KYGPCEIHRISF--LKNI 203


>gi|91784105|ref|YP_559311.1| ribonuclease HII [Burkholderia xenovorans LB400]
 gi|123358681|sp|Q13XD0|RNH2_BURXL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|91688059|gb|ABE31259.1| RNase HII [Burkholderia xenovorans LB400]
          Length = 248

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/183 (48%), Positives = 121/183 (66%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAII-SI 83
           V G+DE GRG LAGPVV AA+I DP   +  G++DSK ++ KKR+ELY+KI   A+   I
Sbjct: 31  VCGVDEAGRGPLAGPVVAAAVIFDPAKPMIRGLDDSKVLTAKKRDELYDKIVDRALAYCI 90

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS + ID  NI  AT+ A+  AVE L V+P    IDG   P  L  ++ AVI GD++ 
Sbjct: 91  ASASVEEIDSLNILHATMLAMKRAVEGLSVVPTLVKIDGNRCPT-LSVRSEAVIGGDALV 149

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+ +P YGF++H GY T +H   ++E GP   HR +F P
Sbjct: 150 KSISAASILAKVTRDRMLLELHQAHPVYGFNAHAGYGTPQHLAALREHGPCEHHRRSFAP 209

Query: 204 LRN 206
           +R 
Sbjct: 210 VRE 212


>gi|156975492|ref|YP_001446399.1| ribonuclease HII [Vibrio harveyi ATCC BAA-1116]
 gi|166226667|sp|A7MY01|RNH2_VIBHB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|156527086|gb|ABU72172.1| hypothetical protein VIBHAR_03223 [Vibrio harveyi ATCC BAA-1116]
          Length = 212

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/182 (48%), Positives = 117/182 (64%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KKR  L  +I   A+  ++ 
Sbjct: 26  VAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEKALAWAVG 85

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S + ID+ NI +AT+ A+  A+  L+V P  ALIDG   PE LP  + AV+KGD    
Sbjct: 86  RCSPEEIDELNILQATMVAMQRAIAGLKVQPDLALIDGNRCPE-LPMDSQAVVKGDLRVA 144

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKV RD+ M    K+YP +GF  H GYPT  H + I++ G    HR +F+P+
Sbjct: 145 EISAASIIAKVVRDQEMEELDKQYPQFGFAKHKGYPTKAHFEAIEQHGVISEHRKSFKPV 204

Query: 205 RN 206
           + 
Sbjct: 205 KK 206


>gi|166154250|ref|YP_001654368.1| ribonuclease HII [Chlamydia trachomatis 434/Bu]
 gi|166155125|ref|YP_001653380.1| ribonuclease HII [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335499|ref|ZP_07223743.1| ribonuclease HII [Chlamydia trachomatis L2tet1]
 gi|238687401|sp|B0B9D6|RNH2_CHLT2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238687453|sp|B0BB15|RNH2_CHLTB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|165930238|emb|CAP03723.1| ribonuclease HII [Chlamydia trachomatis 434/Bu]
 gi|165931113|emb|CAP06677.1| ribonuclease HII [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 217

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/201 (44%), Positives = 124/201 (61%), Gaps = 6/201 (2%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E+  FE +A+  E+    VAG+DE GRG LAGPVV  A IL    +  GI+DSKK++ K+
Sbjct: 13  EKSIFENQAI--EQGYSQVAGVDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQ 70

Query: 68  REELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           R  LYE +     +   +   S + ID+ NI +AT +A+  A+ +L+  P   L+DG  +
Sbjct: 71  RRYLYELLLEDPEVDCGVGVISVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLFL 130

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  +P  +  +IKGD+ S+SIAAASIIAK  RD LMR  H +YP+YGFD H GY TA H 
Sbjct: 131 PHKIP--SLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHL 188

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
           Q +K  GP   HR +F P++ 
Sbjct: 189 QALKHFGPCVYHRKSFSPVKE 209


>gi|332075090|gb|EGI85561.1| ribonuclease HII [Streptococcus pneumoniae GA17545]
          Length = 260

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/204 (45%), Positives = 130/204 (63%), Gaps = 9/204 (4%)

Query: 11  HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           +  LE+M+  EK ++      +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKKI 
Sbjct: 51  NLRLESMLSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            KK  E+++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID  
Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +  DLP    ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAK
Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAK 228

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H + + + G + IHR +F P+++L
Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252


>gi|222528967|ref|YP_002572849.1| ribonuclease HII [Caldicellulosiruptor bescii DSM 6725]
 gi|254807963|sp|B9MQX2|RNH2_ANATD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|222455814|gb|ACM60076.1| Ribonuclease H [Caldicellulosiruptor bescii DSM 6725]
          Length = 206

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 86/198 (43%), Positives = 129/198 (65%), Gaps = 4/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           +FE+E  +  +    + G+DE GRG LAGPV  AA+++D   I  G+ DSKK++ KKRE+
Sbjct: 9   YFEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREK 68

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L+E+I   +I  S++    + ID+ NI+ AT  A+ +A+ENL++ P   L+DG  IP +L
Sbjct: 69  LFEEIIKESIAYSVAMVDSKVIDEININNATFLAMKNAIENLKIEPDIVLVDGYKIP-NL 127

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                A+IKGD  S SIA ASI+AKV+RDR +     KYP Y F+ H GY T +H ++++
Sbjct: 128 GFNQRAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPLYKFEKHKGYGTKEHIEILQ 187

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + GP  IHR++F  L+N+
Sbjct: 188 KYGPCEIHRISF--LKNI 203


>gi|163801793|ref|ZP_02195690.1| ribonuclease HII [Vibrio sp. AND4]
 gi|159174301|gb|EDP59105.1| ribonuclease HII [Vibrio sp. AND4]
          Length = 212

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/182 (48%), Positives = 116/182 (63%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KKR  L  +I   A+  ++ 
Sbjct: 26  IAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEKALAWAVG 85

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S + ID+ NI +AT+ A+  A+E L+V P  ALIDG   PE LP  + AV+KGD    
Sbjct: 86  RCSPEEIDELNILQATMVAMQRAIEGLKVQPDLALIDGNRCPE-LPMDSQAVVKGDLRVA 144

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKV RD+ M    K YP +GF  H GYPT  H + I+  G    HR +F+P+
Sbjct: 145 EISAASIIAKVVRDQEMEELDKHYPQFGFAQHKGYPTKAHFEAIERHGVISQHRKSFKPV 204

Query: 205 RN 206
           + 
Sbjct: 205 KK 206


>gi|149006184|ref|ZP_01829896.1| ribonuclease HII [Streptococcus pneumoniae SP18-BS74]
 gi|225861097|ref|YP_002742606.1| ribonuclease HII [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230996|ref|ZP_06964677.1| ribonuclease HII [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255436|ref|ZP_06979022.1| ribonuclease HII [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298502841|ref|YP_003724781.1| ribonuclease H [Streptococcus pneumoniae TCH8431/19A]
 gi|307127247|ref|YP_003879278.1| ribonuclease HII [Streptococcus pneumoniae 670-6B]
 gi|254807994|sp|C1CRN4|RNH2_STRZT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|147761961|gb|EDK68923.1| ribonuclease HII [Streptococcus pneumoniae SP18-BS74]
 gi|225727970|gb|ACO23821.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238436|gb|ADI69567.1| ribonuclease H [Streptococcus pneumoniae TCH8431/19A]
 gi|306484309|gb|ADM91178.1| ribonuclease HII [Streptococcus pneumoniae 670-6B]
 gi|327389302|gb|EGE87647.1| ribonuclease HII [Streptococcus pneumoniae GA04375]
          Length = 259

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/204 (45%), Positives = 130/204 (63%), Gaps = 9/204 (4%)

Query: 11  HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           +  LE+M+  EK ++      +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKKI 
Sbjct: 51  NLRLESMLSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            KK  E+++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID  
Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +  DLP    ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAK
Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAK 228

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H + + + G + IHR +F P+++L
Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252


>gi|168486442|ref|ZP_02710950.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC1087-00]
 gi|168577174|ref|ZP_02722989.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae MLV-016]
 gi|182684110|ref|YP_001835857.1| ribonuclease HII [Streptococcus pneumoniae CGSP14]
 gi|194396938|ref|YP_002037768.1| ribonuclease HII [Streptococcus pneumoniae G54]
 gi|237650103|ref|ZP_04524355.1| ribonuclease HII [Streptococcus pneumoniae CCRI 1974]
 gi|237822305|ref|ZP_04598150.1| ribonuclease HII [Streptococcus pneumoniae CCRI 1974M2]
 gi|303255770|ref|ZP_07341812.1| ribonuclease HII [Streptococcus pneumoniae BS455]
 gi|303260563|ref|ZP_07346529.1| ribonuclease HII [Streptococcus pneumoniae SP-BS293]
 gi|303262697|ref|ZP_07348636.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS292]
 gi|303265232|ref|ZP_07351143.1| ribonuclease HII [Streptococcus pneumoniae BS397]
 gi|303266995|ref|ZP_07352869.1| ribonuclease HII [Streptococcus pneumoniae BS457]
 gi|303269263|ref|ZP_07355038.1| ribonuclease HII [Streptococcus pneumoniae BS458]
 gi|238690822|sp|B5E4Q2|RNH2_STRP4 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238691160|sp|B2IPW8|RNH2_STRPS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|182629444|gb|ACB90392.1| ribonuclease HII [Streptococcus pneumoniae CGSP14]
 gi|183570488|gb|EDT91016.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC1087-00]
 gi|183577232|gb|EDT97760.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae MLV-016]
 gi|194356605|gb|ACF55053.1| ribonuclease HII [Streptococcus pneumoniae G54]
 gi|301801974|emb|CBW34702.1| ribonuclease HII [Streptococcus pneumoniae INV200]
 gi|302597282|gb|EFL64386.1| ribonuclease HII [Streptococcus pneumoniae BS455]
 gi|302636129|gb|EFL66625.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS292]
 gi|302638276|gb|EFL68745.1| ribonuclease HII [Streptococcus pneumoniae SP-BS293]
 gi|302641220|gb|EFL71592.1| ribonuclease HII [Streptococcus pneumoniae BS458]
 gi|302643475|gb|EFL73748.1| ribonuclease HII [Streptococcus pneumoniae BS457]
 gi|302645203|gb|EFL75439.1| ribonuclease HII [Streptococcus pneumoniae BS397]
 gi|332200480|gb|EGJ14552.1| ribonuclease HII [Streptococcus pneumoniae GA41317]
          Length = 259

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/204 (45%), Positives = 130/204 (63%), Gaps = 9/204 (4%)

Query: 11  HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           +  LE+M+  EK ++      +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKKI 
Sbjct: 51  NLRLESMLSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            KK  E+++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID  
Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +  DLP    ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAK
Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAK 228

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H + + + G + IHR +F P+++L
Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252


>gi|149013109|ref|ZP_01833955.1| ribonuclease HII [Streptococcus pneumoniae SP19-BS75]
 gi|147763054|gb|EDK69997.1| ribonuclease HII [Streptococcus pneumoniae SP19-BS75]
          Length = 259

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/204 (45%), Positives = 130/204 (63%), Gaps = 9/204 (4%)

Query: 11  HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           +  LE+M+  EK ++      +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKKI 
Sbjct: 51  NLRLESMLSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            KK  E+++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID  
Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +  DLP    ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAK
Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAK 228

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H + + + G + IHR +F P+++L
Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252


>gi|126728136|ref|ZP_01743952.1| ribonuclease HII [Sagittula stellata E-37]
 gi|126711101|gb|EBA10151.1| ribonuclease HII [Sagittula stellata E-37]
          Length = 219

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/196 (44%), Positives = 128/196 (65%), Gaps = 5/196 (2%)

Query: 17  MVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           M  E+ +W      VAG+DEVGRG LAGPVV AA++L+  +IP G+NDSKK++ K+RE L
Sbjct: 23  MRFEEALWAQGVNRVAGVDEVGRGPLAGPVVAAAVVLNRASIPDGLNDSKKLTIKRREFL 82

Query: 72  YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
              +  SA +SI  AS + ID+ NI +A+L A+  AVE L   P   L+DG   P  + C
Sbjct: 83  APLLWQSAEVSIGQASVEEIDETNILQASLLAMRRAVEGLPKPPDHLLVDGNRAPGGISC 142

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
            A  ++ GD  S SIAAASI+AK+ RD +M+ A  +YP YG++++ GYPT  H+  ++  
Sbjct: 143 DATCIVGGDGRSPSIAAASIVAKIWRDDVMKRAATQYPGYGWETNAGYPTKCHKSALRNL 202

Query: 192 GPSCIHRLTFRPLRNL 207
           G +  HR +F+P+R++
Sbjct: 203 GATPFHRRSFKPVRDI 218


>gi|15604747|ref|NP_219531.1| ribonuclease HII [Chlamydia trachomatis D/UW-3/CX]
 gi|255310830|ref|ZP_05353400.1| ribonuclease HII [Chlamydia trachomatis 6276]
 gi|255317130|ref|ZP_05358376.1| ribonuclease HII [Chlamydia trachomatis 6276s]
 gi|7227924|sp|O84032|RNH2_CHLTR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|3328419|gb|AAC67619.1| Ribonuclease HII [Chlamydia trachomatis D/UW-3/CX]
 gi|296436469|gb|ADH18639.1| ribonuclease HII [Chlamydia trachomatis G/11222]
 gi|297748160|gb|ADI50706.1| Ribonuclease HII [Chlamydia trachomatis D-EC]
 gi|297749040|gb|ADI51718.1| Ribonuclease HII [Chlamydia trachomatis D-LC]
          Length = 217

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/201 (44%), Positives = 124/201 (61%), Gaps = 6/201 (2%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E+  FE +A+  E+    VAG+DE GRG LAGPVV  A IL    +  GI+DSKK++ K+
Sbjct: 13  EKSIFENQAI--EQGYSQVAGVDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQ 70

Query: 68  REELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           R  LYE +     +   +   S + ID+ NI +AT +A+  A+ +L+  P   L+DG  +
Sbjct: 71  RRYLYELLLEDPEVDCGVGVISVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLFL 130

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  +P  +  +IKGD+ S+SIAAASIIAK  RD LMR  H +YP+YGFD H GY TA H 
Sbjct: 131 PHKVP--SLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHL 188

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
           Q +K  GP   HR +F P++ 
Sbjct: 189 QALKHFGPCVYHRKSFSPVKE 209


>gi|295399793|ref|ZP_06809774.1| Ribonuclease H [Geobacillus thermoglucosidasius C56-YS93]
 gi|312111695|ref|YP_003990011.1| ribonuclease H [Geobacillus sp. Y4.1MC1]
 gi|294978196|gb|EFG53793.1| Ribonuclease H [Geobacillus thermoglucosidasius C56-YS93]
 gi|311216796|gb|ADP75400.1| Ribonuclease H [Geobacillus sp. Y4.1MC1]
          Length = 268

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 86/183 (46%), Positives = 121/183 (66%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AGIDE GRG LAGPVV AA+IL  +    G+NDSKK+S  KRE L+  I S A+ I I 
Sbjct: 74  IAGIDEAGRGPLAGPVVAAAVILPKDAYIPGLNDSKKLSEAKRETLFHMIQSCAVSIGIG 133

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             +   ID+ NI++AT  A+  AVE L   P   L+D  ++P  +P Q+  ++KGD+ S+
Sbjct: 134 VVTAAEIDEINIYEATKKAMIKAVEQLSPKPDYLLVDAMTLPIPMPQQS--IVKGDANSV 191

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAA+S+IAKVTRD  M+   K+YP YGF+ ++GY TA+H + I+  G    HRL+F P+
Sbjct: 192 SIAASSVIAKVTRDHFMKQLAKRYPQYGFEKNMGYGTAQHLEAIRTYGTIDEHRLSFSPI 251

Query: 205 RNL 207
           + +
Sbjct: 252 KEM 254


>gi|15615038|ref|NP_243341.1| ribonuclease H [Bacillus halodurans C-125]
 gi|10720371|sp|Q9Z9S0|RNH2_BACHD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|10175095|dbj|BAB06194.1| ribonuclease H [Bacillus halodurans C-125]
          Length = 263

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/199 (43%), Positives = 126/199 (63%), Gaps = 10/199 (5%)

Query: 15  EAMVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKR 68
           E +  EK++W      VAG+DEVGRG LAGPVV AA+IL P ++   G+ DSKK++ + R
Sbjct: 60  EMLAYEKDLWAKGYEHVAGLDEVGRGPLAGPVVTAAVIL-PKDVQLPGLTDSKKLAKETR 118

Query: 69  EELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E  Y++I   A+  S++      ID+ NI++AT   +  A++ L V P + L+D  ++P 
Sbjct: 119 ESFYDRIKEVALAWSVAIVPVTVIDEVNIYQATKQGMMSAIDQLSVNPDALLLDAMNLPL 178

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            LP Q+   IKGD  SLSIAA+S++AKVTRDR M     +YP+YGF+ HVGY T +H   
Sbjct: 179 SLPQQSL--IKGDQKSLSIAASSVLAKVTRDRYMADLANRYPEYGFERHVGYGTEEHLAA 236

Query: 188 IKEKGPSCIHRLTFRPLRN 206
           +   G +  HR +FRP++ 
Sbjct: 237 LNAHGITPEHRRSFRPVQE 255


>gi|116629569|ref|YP_814741.1| ribonuclease HII [Lactobacillus gasseri ATCC 33323]
 gi|311110787|ref|ZP_07712184.1| ribonuclease HII [Lactobacillus gasseri MV-22]
 gi|122273493|sp|Q043R9|RNH2_LACGA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|116095151|gb|ABJ60303.1| RNase HII [Lactobacillus gasseri ATCC 33323]
 gi|311065941|gb|EFQ46281.1| ribonuclease HII [Lactobacillus gasseri MV-22]
          Length = 250

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/190 (46%), Positives = 126/190 (66%), Gaps = 7/190 (3%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           EK  W     VAG+DEVGRG LAGPVV AA+IL  N     +NDSKK+S KKR+EL+ KI
Sbjct: 58  EKKFWQKSQLVAGVDEVGRGPLAGPVVTAAVILPHNFDLIDVNDSKKLSPKKRKELFPKI 117

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
            + A+ +S+  A++  ID+ NI++A   A+ HAV+ L+V P + L+D  ++P ++P    
Sbjct: 118 LAKAVSVSVGLANNDVIDRINIYEADRLAMAHAVQGLKVKPDALLVDAMNVPLNIP--QV 175

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            +I GD+ S SIAAASI+AKV RD LM    + YP+Y F  + GY T +H + +K+ GP+
Sbjct: 176 KLIHGDAKSNSIAAASIVAKVFRDNLMDAYGEVYPEYDFKHNAGYGTREHMEALKKYGPT 235

Query: 195 CIHRLTFRPL 204
            IHR +F P+
Sbjct: 236 PIHRRSFAPV 245


>gi|332361192|gb|EGJ38996.1| ribonuclease HII [Streptococcus sanguinis SK1056]
          Length = 254

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/203 (45%), Positives = 129/203 (63%), Gaps = 9/203 (4%)

Query: 12  FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
             LE M+R EK ++      +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  
Sbjct: 52  LRLEQMLRYEKELYQAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPK 111

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KK +E+Y+ +   A+ + I   + + ID+ NI++AT  A+  A+  L + P   LID   
Sbjct: 112 KKHQEIYQAVLDKALAVGIGLMNSEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMK 171

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +  D+P ++  +IKGD+ SLSIAAASI+AKVTRD+LM    K+YP Y F  + GY T  H
Sbjct: 172 LDIDIPQES--IIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSH 229

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
            Q ++  G + IHR TF P++++
Sbjct: 230 LQGLERHGVTPIHRKTFEPVKSM 252


>gi|261344722|ref|ZP_05972366.1| ribonuclease HII [Providencia rustigianii DSM 4541]
 gi|282567164|gb|EFB72699.1| ribonuclease HII [Providencia rustigianii DSM 4541]
          Length = 196

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 117/182 (64%), Gaps = 4/182 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK++ KKRE+L+++I   A+   I 
Sbjct: 11  IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLTEKKREKLFDEIKEKALCWCIG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            A    ID+ NI  AT+ A+  AV  L + P   L+DG   P+  +P QA  V+KGDS+ 
Sbjct: 71  RAEPNEIDELNILHATMLAMQRAVAGLSITPEFVLVDGNRCPKLSMPSQA--VVKGDSLV 128

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKV RDR M    K +P+YGF  H GYPTA H + + + G +  HR +F P
Sbjct: 129 QEISAASILAKVVRDREMVELDKVFPEYGFAKHKGYPTAYHLEKLAQFGATEFHRKSFAP 188

Query: 204 LR 205
           +R
Sbjct: 189 VR 190


>gi|169633130|ref|YP_001706866.1| ribonuclease HII [Acinetobacter baumannii SDF]
 gi|169796619|ref|YP_001714412.1| ribonuclease HII [Acinetobacter baumannii AYE]
 gi|213156183|ref|YP_002318603.1| ribonuclease H [Acinetobacter baumannii AB0057]
 gi|215484081|ref|YP_002326306.1| Ribonuclease HII family protein [Acinetobacter baumannii
           AB307-0294]
 gi|301347289|ref|ZP_07228030.1| ribonuclease HII [Acinetobacter baumannii AB056]
 gi|301510211|ref|ZP_07235448.1| ribonuclease HII [Acinetobacter baumannii AB058]
 gi|301597198|ref|ZP_07242206.1| ribonuclease HII [Acinetobacter baumannii AB059]
 gi|332853559|ref|ZP_08434823.1| ribonuclease HII [Acinetobacter baumannii 6013150]
 gi|332868424|ref|ZP_08438155.1| ribonuclease HII [Acinetobacter baumannii 6013113]
 gi|169149546|emb|CAM87435.1| RNAse HII [Acinetobacter baumannii AYE]
 gi|169151922|emb|CAP00776.1| RNAse HII [Acinetobacter baumannii]
 gi|213055343|gb|ACJ40245.1| ribonuclease H [Acinetobacter baumannii AB0057]
 gi|213987268|gb|ACJ57567.1| Ribonuclease HII family protein [Acinetobacter baumannii
           AB307-0294]
 gi|332728592|gb|EGJ59964.1| ribonuclease HII [Acinetobacter baumannii 6013150]
 gi|332733423|gb|EGJ64606.1| ribonuclease HII [Acinetobacter baumannii 6013113]
          Length = 188

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 120/183 (65%), Gaps = 5/183 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DE GRG L G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I   A+  SI+
Sbjct: 3   VAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWSIA 62

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--PCQAFAVIKGDSI 142
            A+H  ID+ NI +AT  A+  AV+ L+  P+  ++DG  IP+ +  PC+A  ++ GD+ 
Sbjct: 63  EATHAEIDELNILQATFLAMQRAVDGLKTQPQKVIVDGNQIPKGIVIPCEA--IVGGDAS 120

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRDR M    ++YP +GF  H GYPT  H + I   G    HR ++ 
Sbjct: 121 HAEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYA 180

Query: 203 PLR 205
           P++
Sbjct: 181 PVK 183


>gi|170692156|ref|ZP_02883319.1| Ribonuclease H [Burkholderia graminis C4D1M]
 gi|170142586|gb|EDT10751.1| Ribonuclease H [Burkholderia graminis C4D1M]
          Length = 273

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/183 (48%), Positives = 121/183 (66%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAII-SI 83
           V G+DE GRG LAGPVV AA+I DP+  +  G++DSK ++ KKR+ELYEKI   A+   I
Sbjct: 48  VCGVDEAGRGPLAGPVVAAAVIFDPSKPMIRGLDDSKVLTAKKRDELYEKIVDRALAYCI 107

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SA+ + ID  NI  AT+ A+  AVE L V P    +DG   P  L  ++ AVI GD++ 
Sbjct: 108 ASATVEEIDTLNILHATMLAMKRAVEGLSVTPTLVKVDGNRCPM-LSVRSEAVIGGDALV 166

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+ +P YGF++H GY T +H   ++E GP   HR +F P
Sbjct: 167 KSISAASILAKVTRDRMLLELHQTHPVYGFNAHAGYGTPQHLAALREHGPCEHHRRSFAP 226

Query: 204 LRN 206
           +R 
Sbjct: 227 VRE 229


>gi|262279707|ref|ZP_06057492.1| ribonuclease H [Acinetobacter calcoaceticus RUH2202]
 gi|262260058|gb|EEY78791.1| ribonuclease H [Acinetobacter calcoaceticus RUH2202]
          Length = 188

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 121/183 (66%), Gaps = 5/183 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DE GRG L G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I   A+  SI+
Sbjct: 3   IAGVDEAGRGPLVGSVVAAAVILDPNNPIVGLNDSKKLTEKKREKLFIEIQEKALAWSIA 62

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--PCQAFAVIKGDSI 142
            A+H  ID+ NI +AT  A+  AV+ L+  P+  ++DG  IP+ +  PC+A  +I GD+ 
Sbjct: 63  EATHGEIDELNILQATFLAMQRAVDGLKTQPQKVIVDGNQIPKGIIIPCEA--IIGGDAS 120

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRDR M+   ++YP +GF  H GYPT  H + I   G    HR ++ 
Sbjct: 121 HAEISAASILAKVTRDRQMQELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYA 180

Query: 203 PLR 205
           P++
Sbjct: 181 PVK 183


>gi|260549960|ref|ZP_05824175.1| ribonuclease HII family protein [Acinetobacter sp. RUH2624]
 gi|260406952|gb|EEX00430.1| ribonuclease HII family protein [Acinetobacter sp. RUH2624]
          Length = 188

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 120/183 (65%), Gaps = 5/183 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DE GRG L G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I   A+  SI+
Sbjct: 3   VAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWSIA 62

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--PCQAFAVIKGDSI 142
            A+H  ID+ NI +AT  A+  AV+ L+  P+  ++DG  IP+ +  PC+A  ++ GD+ 
Sbjct: 63  EATHAEIDELNILQATFLAMQRAVDGLKTQPQKVIVDGNQIPKGIIIPCEA--IVGGDAS 120

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRDR M    ++YP +GF  H GYPT  H + I   G    HR ++ 
Sbjct: 121 HAEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYA 180

Query: 203 PLR 205
           P++
Sbjct: 181 PVK 183


>gi|255348391|ref|ZP_05380398.1| ribonuclease HII [Chlamydia trachomatis 70]
 gi|255502932|ref|ZP_05381322.1| ribonuclease HII [Chlamydia trachomatis 70s]
          Length = 217

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 6/201 (2%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E+  FE +A+  E+    VAGIDE GRG LAGPVV  A IL    +  GI+DSKK++ K+
Sbjct: 13  EKSIFENQAI--EQGYSQVAGIDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQ 70

Query: 68  REELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           R  LYE +     +   +   S + ID+ NI +AT +A+  A+ +L+  P   L+DG  +
Sbjct: 71  RRYLYELLLEDPEVDCGVGVVSVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLFL 130

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  +P  +  +IKGD+ S+SIAAASIIAK  RD LMR  H +YP+YGFD H GY TA H 
Sbjct: 131 PHKIP--SLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHL 188

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
           Q +K  GP   HR +F P++ 
Sbjct: 189 QALKHFGPCVHHRKSFSPVKE 209


>gi|324991142|gb|EGC23076.1| ribonuclease HII [Streptococcus sanguinis SK353]
          Length = 254

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 130/201 (64%), Gaps = 9/201 (4%)

Query: 14  LEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           LE M+R EK ++      +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  KK
Sbjct: 54  LEQMLRYEKELYQAGYRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKK 113

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
            +E+Y+ +   A+ + +   +++ ID+ NI++AT  A+  A+  L + P   LID   + 
Sbjct: 114 HQEIYQAVLDKALAVGVGLMNNEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKLD 173

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            D+P ++  +IKGD+ SLSIAAASI+AKVTRD+LM    K+YP Y F  + GY T  H Q
Sbjct: 174 VDIPQES--IIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSHLQ 231

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            ++  G + IHR TF P++++
Sbjct: 232 GLERHGVTPIHRKTFEPVKSM 252


>gi|28899078|ref|NP_798683.1| ribonuclease HII [Vibrio parahaemolyticus RIMD 2210633]
 gi|260362393|ref|ZP_05775348.1| ribonuclease HII [Vibrio parahaemolyticus K5030]
 gi|260876840|ref|ZP_05889195.1| ribonuclease HII [Vibrio parahaemolyticus AN-5034]
 gi|260897272|ref|ZP_05905768.1| ribonuclease HII [Vibrio parahaemolyticus Peru-466]
 gi|31076897|sp|Q87MF1|RNH2_VIBPA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|28807302|dbj|BAC60567.1| ribonuclease HII [Vibrio parahaemolyticus RIMD 2210633]
 gi|308085359|gb|EFO35054.1| ribonuclease HII [Vibrio parahaemolyticus Peru-466]
 gi|308091461|gb|EFO41156.1| ribonuclease HII [Vibrio parahaemolyticus AN-5034]
 gi|308113983|gb|EFO51523.1| ribonuclease HII [Vibrio parahaemolyticus K5030]
          Length = 211

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 117/182 (64%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KKR  L  +I   A+  ++ 
Sbjct: 26  IAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEKALAWAVG 85

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S + ID+ NI +AT+ A+  A+  L+V P  ALIDG   PE LP  + AV+KGD    
Sbjct: 86  RCSPEEIDELNILQATMVAMQRAITGLKVQPDLALIDGNRCPE-LPMDSQAVVKGDLRVA 144

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKV RD+ M    K+YP +GF  H GYPT  H + I++ G    HR +F+P+
Sbjct: 145 EISAASIIAKVVRDQEMEELDKQYPQFGFAKHKGYPTKAHFEAIEQHGVISEHRKSFKPV 204

Query: 205 RN 206
           + 
Sbjct: 205 KK 206


>gi|260588681|ref|ZP_05854594.1| ribonuclease HII [Blautia hansenii DSM 20583]
 gi|260541156|gb|EEX21725.1| ribonuclease HII [Blautia hansenii DSM 20583]
          Length = 256

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/177 (49%), Positives = 120/177 (67%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG  AGPVV  A+IL P+     +NDSK++S K RE+LY++I   A+ +++ 
Sbjct: 71  ICGIDEVGRGPFAGPVVAGAVILPPDCEILYVNDSKQLSEKMREQLYDEIMEKAVSVAVG 130

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS Q ID+ NI +AT +A+  AV  L V P+  L D  +IP+ +      +IKGD+ S+
Sbjct: 131 YASPQRIDEINILQATYEAMREAVSKLDVTPQILLNDAVTIPQ-ITIPQVPIIKGDAKSI 189

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SIAAASI+AKVTRDRLMR   K  P+YGF S+ GY + +H + IK+ GP+ IHR +F
Sbjct: 190 SIAAASIVAKVTRDRLMREYDKIMPEYGFASNKGYGSKEHIEAIKKYGPTPIHRRSF 246


>gi|262276513|ref|ZP_06054322.1| ribonuclease HII [Grimontia hollisae CIP 101886]
 gi|262220321|gb|EEY71637.1| ribonuclease HII [Grimontia hollisae CIP 101886]
          Length = 200

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 112/182 (61%), Gaps = 1/182 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK++ KKR  L+E+I   A+  S+ 
Sbjct: 14  IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTDKKRAVLFEEIKEKALAWSLG 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L + P   LIDG  +P+ L   A AV+KGD    
Sbjct: 74  RAEPEEIDELNILSATMLAMERAVAGLNIKPDFVLIDGNRVPQGLTVPAQAVVKGDLRVA 133

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RDR M     KYP YGF  H GYPT  H + +   G    HR +F+P+
Sbjct: 134 EISAASILAKVVRDREMEALDAKYPQYGFAKHKGYPTKVHFEALATHGAILEHRKSFKPV 193

Query: 205 RN 206
           + 
Sbjct: 194 KK 195


>gi|254420769|ref|ZP_05034493.1| ribonuclease HII [Brevundimonas sp. BAL3]
 gi|196186946|gb|EDX81922.1| ribonuclease HII [Brevundimonas sp. BAL3]
          Length = 213

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 89/199 (44%), Positives = 121/199 (60%), Gaps = 2/199 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P   LE ++ ++   PV G+DE GRG  AGPV  AA+IL+P+++P GI+DSK ++ K+R 
Sbjct: 12  PTLALETVLIQRVNGPVCGVDEAGRGPWAGPVSAAAVILNPDDLPPGIDDSKALTEKRRA 71

Query: 70  ELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            L  +I + A+   +  AS + I+  NI  AT  A+  AVE L V P +AL+DG +    
Sbjct: 72  ALEPEIKARAVAWGVGFASVEEIEDLNILHATGLAMCRAVEQLAVQPAAALVDG-NYRFR 130

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LPC+   V+ GD +SLSIAAASI+AK  RDRLM     +YP YGF  H GY    HQ  +
Sbjct: 131 LPCEIQTVVGGDGLSLSIAAASILAKTARDRLMIDLDAQYPGYGFARHKGYNAPIHQAAL 190

Query: 189 KEKGPSCIHRLTFRPLRNL 207
           K  GP   HR  + P+R L
Sbjct: 191 KTLGPCPAHRRGWSPIRAL 209


>gi|325696515|gb|EGD38405.1| ribonuclease HII [Streptococcus sanguinis SK160]
          Length = 254

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 90/203 (44%), Positives = 130/203 (64%), Gaps = 9/203 (4%)

Query: 12  FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
             LE M+R EK ++      +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  
Sbjct: 52  LRLEQMLRYEKELYKADYQAIAGIDEVGRGPLAGPVVAAAVILPPECKIKGLNDSKKIPK 111

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KK +++Y+ +   A+ + +   +++ ID+ NI++AT  A+  A+  L + P   LID   
Sbjct: 112 KKHQDIYQAVLDKALAVGVGLMNNEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMK 171

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +  D+P ++  +IKGD+ SLSIAAASI+AKVTRD+LM    KK+P Y F  + GY T  H
Sbjct: 172 LDVDIPQES--IIKGDANSLSIAAASIVAKVTRDKLMADYDKKFPGYDFAKNAGYGTRSH 229

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
            Q ++  G + IHR TF P++++
Sbjct: 230 LQGLERSGVTPIHRKTFEPIKSM 252


>gi|325694493|gb|EGD36402.1| ribonuclease HII [Streptococcus sanguinis SK150]
          Length = 254

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 90/201 (44%), Positives = 130/201 (64%), Gaps = 9/201 (4%)

Query: 14  LEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           LE M+R EK ++      +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  KK
Sbjct: 54  LEQMLRYEKELYQAGYRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKK 113

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
            +E+Y+++   A+ + +     + IDK NI++AT  A+  A+  L++ P   LID   + 
Sbjct: 114 HDEIYQEVMDKALAVGVGLMDSKIIDKVNIYQATKLAMKDALSRLKIEPDYLLIDAMKLD 173

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            ++P ++  +IKGD+ SLSIAAASI+AKVTRD+LM    K++P Y F  + GY T  H Q
Sbjct: 174 VEIPQES--IIKGDANSLSIAAASIVAKVTRDKLMADYDKEFPGYDFSQNAGYGTKSHLQ 231

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            ++  G + IHR TF P++++
Sbjct: 232 GLERNGVTPIHRKTFEPVKSM 252


>gi|153839485|ref|ZP_01992152.1| ribonuclease HII [Vibrio parahaemolyticus AQ3810]
 gi|149746990|gb|EDM57978.1| ribonuclease HII [Vibrio parahaemolyticus AQ3810]
          Length = 211

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 117/182 (64%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KKR  L  +I   A+  ++ 
Sbjct: 26  IAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEKALAWAVG 85

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S + ID+ NI +AT+ A+  A+  L+V P  ALIDG   PE LP  + AV+KGD    
Sbjct: 86  RCSPEEIDELNILQATMVAMQRAIAGLKVQPDLALIDGNRCPE-LPMDSQAVVKGDLRVA 144

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKV RD+ M    K+YP +GF  H GYPT  H + I++ G    HR +F+P+
Sbjct: 145 EISAASIIAKVVRDQEMEELDKQYPQFGFAKHKGYPTKAHFEAIEQHGVISEHRKSFKPV 204

Query: 205 RN 206
           + 
Sbjct: 205 KK 206


>gi|332076292|gb|EGI86758.1| ribonuclease HII [Streptococcus pneumoniae GA41301]
          Length = 259

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 92/204 (45%), Positives = 130/204 (63%), Gaps = 9/204 (4%)

Query: 11  HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           +  LE+M+  EK ++      +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKKI 
Sbjct: 51  NLRLESMLSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            KK  E+++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID  
Sbjct: 111 KKKHLEIFQVVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +  DLP    ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAK
Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAK 228

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H + + + G + IHR +F P+++L
Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252


>gi|331081970|ref|ZP_08331098.1| hypothetical protein HMPREF0992_00022 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330405565|gb|EGG85095.1| hypothetical protein HMPREF0992_00022 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 256

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/177 (49%), Positives = 120/177 (67%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG  AGPVV  A+IL P+     +NDSK++S K RE+LY++I   A+ +++ 
Sbjct: 71  ICGIDEVGRGPFAGPVVAGAVILPPDCEILYVNDSKQLSEKMREQLYDEIMEKAVSVAVG 130

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS Q ID+ NI +AT +A+  AV  L V P+  L D  +IP+ +      +IKGD+ S+
Sbjct: 131 YASPQRIDEINILQATYEAMREAVSKLAVTPQILLNDAVTIPQ-ITIPQVPIIKGDAKSI 189

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SIAAASI+AKVTRDRLMR   K  P+YGF S+ GY + +H + IK+ GP+ IHR +F
Sbjct: 190 SIAAASIVAKVTRDRLMREYDKIMPEYGFASNKGYGSKEHIEAIKKYGPTPIHRRSF 246


>gi|254363172|ref|ZP_04979221.1| ribonuclease H [Mannheimia haemolytica PHL213]
 gi|261493949|ref|ZP_05990457.1| ribonuclease H [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261494766|ref|ZP_05991245.1| ribonuclease H [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|153095066|gb|EDN75617.1| ribonuclease H [Mannheimia haemolytica PHL213]
 gi|261309583|gb|EEY10807.1| ribonuclease H [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261310381|gb|EEY11576.1| ribonuclease H [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 198

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 89/183 (48%), Positives = 117/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR+ L E+I + A+  S+ 
Sbjct: 12  IAGVDEVGRGPLVGAVVTAAVILDPNNPIQGLTDSKKLSEKKRQALAEEIKAKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  A AV+KGDS+  
Sbjct: 72  RAEPTEIDELNILNATMLAMQRAVAGLHIQPDFVLIDGNRPPK-LPMPAQAVVKGDSLVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKV RD+ M    +++P YGF  H GYPT  H + + E G +  HR +F P+
Sbjct: 131 EISAASIIAKVARDQEMDELDQQFPQYGFAQHKGYPTKLHFEKLAEFGATPYHRKSFAPV 190

Query: 205 RNL 207
           R +
Sbjct: 191 RKV 193


>gi|15901021|ref|NP_345625.1| ribonuclease HII [Streptococcus pneumoniae TIGR4]
 gi|111658304|ref|ZP_01408994.1| hypothetical protein SpneT_02000533 [Streptococcus pneumoniae
           TIGR4]
 gi|32171703|sp|Q97QP5|RNH2_STRPN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|14972634|gb|AAK75265.1| ribonuclease HII [Streptococcus pneumoniae TIGR4]
          Length = 259

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 91/204 (44%), Positives = 130/204 (63%), Gaps = 9/204 (4%)

Query: 11  HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           +  LE+M+  EK ++      +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKKI 
Sbjct: 51  NLRLESMLSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILSKNCKIKGLNDSKKIP 110

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            KK  E+++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID  
Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +  DLP    ++IKGD+ SLSIAAASI+AKVTRD L++   +++P Y F ++ GY TAK
Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELLKEYDQQFPGYDFATNAGYGTAK 228

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H + + + G + IHR +F P+++L
Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252


>gi|301169801|emb|CBW29405.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Haemophilus
           influenzae 10810]
          Length = 197

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 118/182 (64%), Gaps = 1/182 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L E+I   A+  ++ 
Sbjct: 11  IAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKALAWALG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI +A+L A+  AV++L++ P   L+DG  IP+DL   A AV+KGDSI  
Sbjct: 71  RAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKGDSIVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR +F P+
Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAELGALPQHRRSFAPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KK 192


>gi|221233322|ref|YP_002515758.1| ribonuclease HII [Caulobacter crescentus NA1000]
 gi|239977582|sp|B8GZ34|RNH2_CAUCN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|239977583|sp|P0CAW4|RNH2_CAUCR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|220962494|gb|ACL93850.1| ribonuclease HII [Caulobacter crescentus NA1000]
          Length = 211

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/201 (47%), Positives = 118/201 (58%), Gaps = 5/201 (2%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           +P  P   LE    +    PV G+DE GRG  AGPV   A+ILDP+ IP G+NDSKK+S 
Sbjct: 1   MPPGPDMTLELACGQA---PVCGVDEAGRGPWAGPVSAGAVILDPDRIPKGLNDSKKLSA 57

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           K R  L E+I   AI   +  AS + I + NI  A   A+  AVE L V P  AL+DG +
Sbjct: 58  KARAALEEEIKDVAISWCVGLASIEEIAQLNILHAAGLAMRRAVEGLAVTPAFALVDG-N 116

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
               LPC    VIKGDS+S SIAAASI+AK  RDR+M  A   YP YGF  H GY    H
Sbjct: 117 YAFKLPCPVKTVIKGDSLSCSIAAASILAKEARDRIMIEADALYPGYGFAGHKGYHAKVH 176

Query: 185 QQVIKEKGPSCIHRLTFRPLR 205
            + ++  GPS IHRL + P++
Sbjct: 177 VEGLRRLGPSPIHRLGWAPVK 197


>gi|160880532|ref|YP_001559500.1| ribonuclease H [Clostridium phytofermentans ISDg]
 gi|189043586|sp|A9KLL7|RNH2_CLOPH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|160429198|gb|ABX42761.1| Ribonuclease H [Clostridium phytofermentans ISDg]
          Length = 254

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 92/184 (50%), Positives = 124/184 (67%), Gaps = 4/184 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG LAGPV+  A+IL  +     INDSK++S KKRE LY++I   AI + I 
Sbjct: 72  ICGIDEVGRGPLAGPVIACAVILPKDCEILYINDSKQLSEKKREALYDEIMEKAISVGIG 131

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SASH  I++ NI +AT +A+  A+  L V+P   L D  +IP+ +  Q   +IKGD+ S+
Sbjct: 132 SASHARIEEINILQATYEAMRGAINKLGVVPELLLNDAVTIPKVVIPQV-PIIKGDAKSI 190

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASI+AKVTRDRLM      +P YGF S+ GY +A H + +KE GPS IHR +F  +
Sbjct: 191 SIAAASIVAKVTRDRLMVEYDTVFPGYGFASNKGYGSADHIKALKELGPSPIHRASF--I 248

Query: 205 RNLS 208
           +NL+
Sbjct: 249 KNLT 252


>gi|77462008|ref|YP_351512.1| ribonuclease HII [Rhodobacter sphaeroides 2.4.1]
 gi|221640959|ref|YP_002527221.1| ribonuclease HII [Rhodobacter sphaeroides KD131]
 gi|332559935|ref|ZP_08414257.1| ribonuclease HII [Rhodobacter sphaeroides WS8N]
 gi|97189247|sp|Q3J6H3|RNH2_RHOS4 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807985|sp|B9KRA6|RNH2_RHOSK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|77386426|gb|ABA77611.1| ribonuclease HII [Rhodobacter sphaeroides 2.4.1]
 gi|221161740|gb|ACM02720.1| Ribonuclease HII [Rhodobacter sphaeroides KD131]
 gi|332277647|gb|EGJ22962.1| ribonuclease HII [Rhodobacter sphaeroides WS8N]
          Length = 212

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 86/198 (43%), Positives = 125/198 (63%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P +  E     +    V G+DEVGRG LAGPV  AA+ L P  IP G+NDSKK++  +RE
Sbjct: 6   PDWTHETAALAEGFTCVVGVDEVGRGPLAGPVTAAAVRLFPGRIPEGLNDSKKLTAPRRE 65

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L  +I + A +SI+ AS + ID+ NI +A+  A+  A+  L   P  ALIDG  +P+ L
Sbjct: 66  MLAAEIHTVAEVSIAHASVEEIDRLNILQASHLAMGRALAGLPSRPDFALIDGHMVPKGL 125

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             +  A++KGD++ LSIAAASI+AKV RDR+M    +++P YG+ ++ GY T  H Q + 
Sbjct: 126 GHRCRAIVKGDALCLSIAAASIVAKVARDRIMVDLEQQHPGYGWRTNAGYGTKDHLQALL 185

Query: 190 EKGPSCIHRLTFRPLRNL 207
             GP+  HR +F+P+ N+
Sbjct: 186 NLGPTPHHRRSFKPVHNI 203


>gi|324992892|gb|EGC24812.1| ribonuclease HII [Streptococcus sanguinis SK405]
          Length = 254

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 91/203 (44%), Positives = 129/203 (63%), Gaps = 9/203 (4%)

Query: 12  FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
             LE M+R EK ++      +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  
Sbjct: 52  LRLEQMLRYEKELYQAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPK 111

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KK +E+Y+ + + A+ + +    ++ ID+ NI++AT  A+  A+  L   P   LID   
Sbjct: 112 KKHQEIYQTVMNKALAVGVGLIDNEIIDQVNIYEATKLAMKEALSKLSFKPDYLLIDAMK 171

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +  D+P ++  +IKGD+ SLSIAAASI+AKVTRD+LM    K+YP Y F  + GY T  H
Sbjct: 172 LDIDIPQES--IIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSH 229

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
            Q ++  G + IHR TF P++++
Sbjct: 230 LQGLERHGVTPIHRKTFEPVKSM 252


>gi|293608749|ref|ZP_06691052.1| ribonuclease HII [Acinetobacter sp. SH024]
 gi|292829322|gb|EFF87684.1| ribonuclease HII [Acinetobacter sp. SH024]
          Length = 189

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 85/186 (45%), Positives = 121/186 (65%), Gaps = 5/186 (2%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII- 81
           M  +AG+DE GRG L G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I   A+  
Sbjct: 1   MMFIAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAW 60

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--PCQAFAVIKG 139
           SI+ A+H  ID+ NI +AT  A+  AV+ L+  P+  ++DG  IP+ +  PC+A  ++ G
Sbjct: 61  SIAEATHAEIDELNILQATFLAMQRAVDGLKTQPQKVIVDGNQIPKGIIIPCEA--IVGG 118

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D+    I+AASI+AKVTRDR M    ++YP +GF  H GYPT  H + I   G    HR 
Sbjct: 119 DASHAEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAVHGVIDQHRR 178

Query: 200 TFRPLR 205
           ++ P++
Sbjct: 179 SYAPVK 184


>gi|227432240|ref|ZP_03914236.1| ribonuclease HII [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227352013|gb|EEJ42243.1| ribonuclease HII [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 253

 Score =  158 bits (400), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/206 (48%), Positives = 128/206 (62%), Gaps = 9/206 (4%)

Query: 8   ERPHFELEAMVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62
           +R HF L     E+  W      +AG+DEVGRG LAGPVV AAIIL  +     + DSK+
Sbjct: 50  KREHF-LSRFDIERQYWMQGYDLIAGVDEVGRGPLAGPVVAAAIILPHDFDVLDVIDSKQ 108

Query: 63  ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           +S KKR+ELY+KI   AI I +       ID+ NI++A   A+  AV  L  IP + LID
Sbjct: 109 LSAKKRDELYDKIIEKAISIGVGRVEASIIDEINIYEAARVAMTEAVNQLAPIPEALLID 168

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
              +  DLP Q F +IKGD+ S SI AASIIAKVTRDRLM     KYP YGF+ + GY T
Sbjct: 169 AMRLDLDLP-QEF-LIKGDARSNSIGAASIIAKVTRDRLMASYGLKYPGYGFEKNAGYGT 226

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207
            +H + IK+ G + IHR TF P++++
Sbjct: 227 KEHLEGIKKIGITPIHRKTFAPIKDI 252


>gi|332976611|gb|EGK13452.1| ribonuclease HII [Desmospora sp. 8437]
          Length = 264

 Score =  158 bits (400), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 88/196 (44%), Positives = 120/196 (61%), Gaps = 2/196 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           + LE   R +    +AG+DE GRG LAGPVV AA+IL       G+NDSKK+S ++RE L
Sbjct: 61  WRLEREYRRQGYQAIAGVDEAGRGPLAGPVVAAAVILPLGFDATGLNDSKKLSPEERESL 120

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
             +I   A+ + I  A H+YID+HNI +AT +A+  AV +L       L+D   +PE L 
Sbjct: 121 RVRIERDAVAVGIGVADHRYIDEHNILQATYEAMRRAVADLSPAADCLLLDAVEVPE-LF 179

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                ++KGD++S SIAAAS+IAK  RDR M  A KKYP YGF+ ++GY T  H   ++ 
Sbjct: 180 LPQHPIVKGDALSHSIAAASVIAKTFRDRCMTAAGKKYPQYGFEKNMGYGTPDHLAALER 239

Query: 191 KGPSCIHRLTFRPLRN 206
            G   IHR +F P+R 
Sbjct: 240 WGTCPIHRKSFAPVRE 255


>gi|126460898|ref|YP_001042012.1| ribonuclease HII [Rhodobacter sphaeroides ATCC 17029]
 gi|166226644|sp|A3PFX4|RNH2_RHOS1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|126102562|gb|ABN75240.1| Ribonuclease H [Rhodobacter sphaeroides ATCC 17029]
          Length = 212

 Score =  158 bits (400), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 86/198 (43%), Positives = 125/198 (63%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P +  E     +    V G+DEVGRG LAGPV  AA+ L P  IP G+NDSKK++  +RE
Sbjct: 6   PDWTHETAALAEGFTCVVGVDEVGRGPLAGPVTAAAVRLFPGRIPEGLNDSKKLTALRRE 65

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L  +I + A +SI+ AS + ID+ NI +A+  A+  A+  L   P  ALIDG  +P+ L
Sbjct: 66  MLAAEIHTVAEVSIAHASVEEIDRLNILQASHLAMGRALAGLPSRPDFALIDGHMVPKGL 125

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             +  A++KGD++ LSIAAASI+AKV RDR+M    +++P YG+ ++ GY T  H Q + 
Sbjct: 126 GHRCRAIVKGDALCLSIAAASIVAKVARDRIMVDLEQQHPGYGWRTNAGYGTKDHLQALL 185

Query: 190 EKGPSCIHRLTFRPLRNL 207
             GP+  HR +F+P+ N+
Sbjct: 186 NLGPTPHHRRSFKPVHNI 203


>gi|121726559|ref|ZP_01679808.1| ribonuclease HII [Vibrio cholerae V52]
 gi|262189887|ref|ZP_06048211.1| ribonuclease HII [Vibrio cholerae CT 5369-93]
 gi|121631012|gb|EAX63391.1| ribonuclease HII [Vibrio cholerae V52]
 gi|262034231|gb|EEY52647.1| ribonuclease HII [Vibrio cholerae CT 5369-93]
          Length = 206

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 93/200 (46%), Positives = 123/200 (61%), Gaps = 7/200 (3%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E P FE+ A         +AG+DEVGRG L G VV AA+ILDP+    G+NDSKK+S KK
Sbjct: 8   ELPPFEIPA-----GYALIAGVDEVGRGPLVGDVVTAAVILDPHRPIMGLNDSKKLSEKK 62

Query: 68  REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L+ +I   A+  ++   S Q ID+ NI +AT+ A+  AV  L++ P   LIDG  IP
Sbjct: 63  RLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNKIP 122

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           + LP +A AV+KGD     I+AASIIAKV RD+ M    K+YP +GF  H GYPTA H  
Sbjct: 123 K-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAHFA 181

Query: 187 VIKEKGPSCIHRLTFRPLRN 206
            I++ G    HR +F P++ 
Sbjct: 182 AIEQHGVIEQHRKSFGPVKR 201


>gi|327489685|gb|EGF21476.1| ribonuclease HII [Streptococcus sanguinis SK1058]
          Length = 254

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/201 (45%), Positives = 129/201 (64%), Gaps = 9/201 (4%)

Query: 14  LEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           LE M+R EK ++      +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  KK
Sbjct: 54  LEQMLRYEKELYQAGYRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKK 113

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
            +E+Y+ +   A+ + I    ++ ID+ NI++AT  A+  A+  L + P   LID   + 
Sbjct: 114 HQEIYQAVLDKALAVGIGLIDNEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKLD 173

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            D+P ++  +IKGD+ SLSIAAASI+AKVTRD+LM    K+YP Y F  + GY T  H Q
Sbjct: 174 IDIPQES--IIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSHLQ 231

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            ++  G + IHR TF P++++
Sbjct: 232 GLERHGVTPIHRKTFEPVKSM 252


>gi|301794258|emb|CBW36679.1| ribonuclease HII [Streptococcus pneumoniae INV104]
 gi|332203012|gb|EGJ17080.1| ribonuclease HII [Streptococcus pneumoniae GA47901]
          Length = 259

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/204 (45%), Positives = 130/204 (63%), Gaps = 9/204 (4%)

Query: 11  HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           +  LE+M+  EK ++      +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKKI 
Sbjct: 51  NLRLESMLSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            KK  E+++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID  
Sbjct: 111 KKKHLEIFQVVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +  DLP    ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAK
Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAK 228

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H + + + G + IHR +F P+++L
Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252


>gi|307706602|ref|ZP_07643409.1| ribonuclease HII [Streptococcus mitis SK321]
 gi|307618057|gb|EFN97217.1| ribonuclease HII [Streptococcus mitis SK321]
          Length = 259

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 91/204 (44%), Positives = 129/204 (63%), Gaps = 9/204 (4%)

Query: 11  HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
              LE+M+  EK ++      +AG+DEVGRG LAGPVV AA+IL  N    G+NDSKKI 
Sbjct: 51  ELRLESMLSYEKELYKQGLTLIAGVDEVGRGPLAGPVVAAAVILPKNCKIRGLNDSKKIP 110

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            KK  E+++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID  
Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIMDNQVIDQVNIYEATKLAMQEAISQLSPQPDHLLIDAM 170

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +  DLP    ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAK
Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFTANAGYGTAK 228

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H + + + G + IHR +F P+++L
Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252


>gi|149907539|ref|ZP_01896286.1| ribonuclease HII [Moritella sp. PE36]
 gi|149809209|gb|EDM69138.1| ribonuclease HII [Moritella sp. PE36]
          Length = 199

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 87/181 (48%), Positives = 115/181 (63%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR+ L+ +I   A+  SI 
Sbjct: 13  VAGVDEVGRGPLVGDVVTAAVILDPNNPIVGLTDSKKLSDKKRQLLFPEIKEKALAWSIG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S   ID+ NI +AT+ A+  AV  L + P    IDG   P  LP  A A++KGD    
Sbjct: 73  RCSPSEIDELNILQATMVAMQRAVAGLTLQPEHVFIDGNRCPA-LPMPAEAIVKGDLRVA 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD  M   H++YP+YGF  H GYPT  H + + E GP+  +R +F+P+
Sbjct: 132 EISAASILAKVVRDAEMDELHERYPEYGFAQHKGYPTKAHMEKLAELGPTEEYRKSFKPV 191

Query: 205 R 205
           +
Sbjct: 192 Q 192


>gi|270292737|ref|ZP_06198948.1| ribonuclease HII [Streptococcus sp. M143]
 gi|270278716|gb|EFA24562.1| ribonuclease HII [Streptococcus sp. M143]
          Length = 259

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 88/194 (45%), Positives = 124/194 (63%), Gaps = 3/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  + ++ M  +AG+DEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK  E+++ 
Sbjct: 61  EKELYKQGMTFIAGVDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEIFQA 120

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           +   A+ I +    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DLP   
Sbjct: 121 VQDQALAIGVGIMDNQIIDQVNIYEATKLAMKEAISQLSPQPEHLLIDAMQL--DLPISQ 178

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            A+IKGD+ SLSIAAASI+AKVTRD +M+    +YP Y F ++ GY TAKH + +++ G 
Sbjct: 179 TAIIKGDANSLSIAAASIVAKVTRDNIMKDYDNQYPGYDFAANAGYGTAKHLEGLEKLGV 238

Query: 194 SCIHRLTFRPLRNL 207
           + IHR +F P++ L
Sbjct: 239 TPIHRTSFEPVKTL 252


>gi|183597582|ref|ZP_02959075.1| hypothetical protein PROSTU_00865 [Providencia stuartii ATCC 25827]
 gi|188023079|gb|EDU61119.1| hypothetical protein PROSTU_00865 [Providencia stuartii ATCC 25827]
          Length = 197

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 115/182 (63%), Gaps = 4/182 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP N   G+ DSKK++ KKRE+L+ +I   A+   I 
Sbjct: 11  IAGVDEVGRGPLVGAVVTAAVILDPKNPIIGLTDSKKLTEKKREKLFVEIQEKALCWCIG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            A  + ID+ NI  AT+ A+  AV  L + P   L+DG   P   +P QA  VIKGDS+ 
Sbjct: 71  RAEPEEIDEINILHATMLAMQRAVAGLSITPDFVLVDGNRCPTLSMPSQA--VIKGDSLV 128

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKV RDR M    K YP+YGF  H GYPTA H + + + G +  HR +F P
Sbjct: 129 QEISAASILAKVVRDREMVELDKAYPEYGFAKHKGYPTAYHLEKLAQFGATKFHRKSFAP 188

Query: 204 LR 205
           +R
Sbjct: 189 VR 190


>gi|254448807|ref|ZP_05062264.1| ribonuclease HII [gamma proteobacterium HTCC5015]
 gi|198261648|gb|EDY85936.1| ribonuclease HII [gamma proteobacterium HTCC5015]
          Length = 202

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 93/182 (51%), Positives = 119/182 (65%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG DE GRG LAG VV AA++LDP     G+NDSKK+S K+RE LYE+I + A    I+
Sbjct: 17  IAGADEAGRGPLAGSVVAAAVVLDPKRPIPGLNDSKKLSEKRREALYEEICAEASDWCIA 76

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID  NI  A++ A+  A+E LQ  P  ALIDG   P D+   A A++KGD    
Sbjct: 77  RASVEEIDDLNILHASMLAMKRAIEGLQHPPEQALIDGNRCP-DVSMPAQAIVKGDGRVA 135

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I AASI+AKV RDR M + H+ YPDYGFD H GYPTA HQ+ +K  GP+  HR +F P+
Sbjct: 136 CIGAASILAKVARDRDMLLLHEAYPDYGFDRHKGYPTALHQERLKALGPTEHHRRSFGPV 195

Query: 205 RN 206
           + 
Sbjct: 196 KK 197


>gi|241761783|ref|ZP_04759869.1| Ribonuclease H [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241373697|gb|EER63257.1| Ribonuclease H [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 215

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 87/186 (46%), Positives = 123/186 (66%), Gaps = 5/186 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           V G+DEVGRG LAGPV+  A+ L   +IP GINDSKK++ ++R  L + + + A  +   
Sbjct: 26  VFGVDEVGRGPLAGPVMAGAVYLHREHIPEGINDSKKLTARRRHLLSDMLHNQADYATGM 85

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENL-QVI---PRSALIDGRSIPEDLPCQAFAVIKGDS 141
           A+   ID+ NI +A+L A+  AVE L Q I   P   L+DGR IP D P  +  +IKGDS
Sbjct: 86  ANVHEIDRINIRQASLLAMKRAVEALIQKIGREPDCILVDGRDIP-DWPWPSLPIIKGDS 144

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +SLSIAAASI+AKV RD +M  A ++YP YG++ ++GYPT +H++ I+   P+  HR +F
Sbjct: 145 LSLSIAAASIVAKVERDEIMVKASQEYPGYGWEHNMGYPTKEHREAIQRLKPTKFHRRSF 204

Query: 202 RPLRNL 207
            P+R  
Sbjct: 205 SPIRQF 210


>gi|146297153|ref|YP_001180924.1| ribonuclease H [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|189043571|sp|A4XLE8|RNH2_CALS8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|145410729|gb|ABP67733.1| RNase HII [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 205

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 89/198 (44%), Positives = 128/198 (64%), Gaps = 4/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           +FELE  + ++    + G+DE GRG LAGPV  AA+I+D   I  G+ DSKK++ KKRE+
Sbjct: 9   YFELEENLLKEGYRFICGVDEAGRGPLAGPVFAAAVIMDREIIIEGVRDSKKLTPKKREK 68

Query: 71  LYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L+E+I   +I  S++   ++ ID+ NI+ AT  A+ +A+E L+++P   L+DG  IP DL
Sbjct: 69  LFEEIVKESITYSVAMVDNKTIDEININNATFLAMKNAIEALELVPDIVLVDGYEIP-DL 127

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                A+IKGD  S SIA ASI+AKV+RDR +      YP Y F+ H GY T +H ++I 
Sbjct: 128 NLPQKALIKGDRKSYSIACASILAKVSRDRFITQISSLYPVYKFEKHKGYGTKEHIRLIL 187

Query: 190 EKGPSCIHRLTFRPLRNL 207
           E GP  IHR +F  L+N+
Sbjct: 188 EYGPCEIHRKSF--LKNI 203


>gi|229846090|ref|ZP_04466202.1| ribonuclease HII [Haemophilus influenzae 7P49H1]
 gi|229811094|gb|EEP46811.1| ribonuclease HII [Haemophilus influenzae 7P49H1]
          Length = 197

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 118/182 (64%), Gaps = 1/182 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L E+I   A+  ++ 
Sbjct: 11  IAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKALAWALG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI +A+L A+  AV++L++ P   L+DG  IP+DL   A AV+KGDS+  
Sbjct: 71  RAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKGDSLVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR +F P+
Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRRSFAPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KK 192


>gi|153835395|ref|ZP_01988062.1| ribonuclease HII [Vibrio harveyi HY01]
 gi|269960605|ref|ZP_06174977.1| ribonuclease HII [Vibrio harveyi 1DA3]
 gi|148868081|gb|EDL67253.1| ribonuclease HII [Vibrio harveyi HY01]
 gi|269834682|gb|EEZ88769.1| ribonuclease HII [Vibrio harveyi 1DA3]
          Length = 212

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 117/182 (64%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KKR  L  +I   A+  ++ 
Sbjct: 26  VAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEKALAWAVG 85

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S + ID+ NI +AT+ A+  A+  L+V P  ALIDG   P+ LP  + AV+KGD    
Sbjct: 86  RCSPEEIDELNILQATMVAMQRAIAGLKVQPDLALIDGNRCPQ-LPMDSQAVVKGDLRVA 144

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKV RD+ M    K+YP +GF  H GYPT  H + I++ G    HR +F+P+
Sbjct: 145 EISAASIIAKVVRDQEMEELDKQYPQFGFAKHKGYPTKAHFEAIEQHGVISEHRKSFKPV 204

Query: 205 RN 206
           + 
Sbjct: 205 KK 206


>gi|302187912|ref|ZP_07264585.1| ribonuclease HII [Pseudomonas syringae pv. syringae 642]
          Length = 218

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 88/181 (48%), Positives = 115/181 (63%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE+LY +I   A+   I+
Sbjct: 15  VAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLYVEIQEKALCWFIA 74

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AVE L + P+ ALIDG   P+ L   +  V+KGDS   
Sbjct: 75  RAEVEEIDQLNILHATMLAMQRAVEGLSITPKLALIDGNRCPQ-LSVPSAPVVKGDSKVP 133

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P+
Sbjct: 134 AIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 193

Query: 205 R 205
           R
Sbjct: 194 R 194


>gi|260752544|ref|YP_003225437.1| ribonuclease H [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258551907|gb|ACV74853.1| Ribonuclease H [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 215

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 87/186 (46%), Positives = 123/186 (66%), Gaps = 5/186 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           V G+DEVGRG LAGPV+  A+ L   +IP GINDSKK++ ++R  L + + + A  +   
Sbjct: 26  VFGVDEVGRGPLAGPVMAGAVYLHREHIPEGINDSKKLTARRRHLLSDMLHNQADYATGM 85

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENL-QVI---PRSALIDGRSIPEDLPCQAFAVIKGDS 141
           A+   ID+ NI +A+L A+  AVE L Q I   P   L+DGR IP D P  +  +IKGDS
Sbjct: 86  ANVHEIDRINIRQASLLAMKRAVEALIQKIGREPDCILVDGRDIP-DWPWLSLPIIKGDS 144

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +SLSIAAASI+AKV RD +M  A ++YP YG++ ++GYPT +H++ I+   P+  HR +F
Sbjct: 145 LSLSIAAASIVAKVERDEIMVKASQEYPGYGWEHNMGYPTKEHREAIQRLKPTKFHRRSF 204

Query: 202 RPLRNL 207
            P+R  
Sbjct: 205 SPIRQF 210


>gi|90425833|ref|YP_534203.1| ribonuclease HII [Rhodopseudomonas palustris BisB18]
 gi|122475150|sp|Q20YA2|RNH2_RHOPB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|90107847|gb|ABD89884.1| RNase HII [Rhodopseudomonas palustris BisB18]
          Length = 266

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 1/195 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E  + ++ +WPVAG DE GRG LAGPVV AA++LDP  IP G++DSK+++  KRE
Sbjct: 44  PSFRRERALLKRGVWPVAGCDEAGRGPLAGPVVAAAVVLDPKRIPKGLDDSKRLTADKRE 103

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           +L+E+I ++A  +++ AS   ID+ NI +A+L A+  AV  L  +PR   +DGR      
Sbjct: 104 QLFEQICATAAFAVAYASPARIDRDNILRASLWALAKAVHALPEMPRHVFVDGRDKIA-T 162

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C   AVI GD + LSIAAASIIAKV+RDRLM    +  P YGF++H GY   +H   + 
Sbjct: 163 SCDCDAVIGGDGLVLSIAAASIIAKVSRDRLMCRLAEDCPGYGFENHKGYGVPEHLAALD 222

Query: 190 EKGPSCIHRLTFRPL 204
             GPS  HR  F P+
Sbjct: 223 RLGPSKHHRRLFAPV 237


>gi|206890782|ref|YP_002248663.1| ribonuclease HII [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742720|gb|ACI21777.1| ribonuclease HII [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 201

 Score =  158 bits (399), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 89/196 (45%), Positives = 116/196 (59%), Gaps = 1/196 (0%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F  +   R +    +AGIDE GRG LAGPVV A +    +    GI DSK++SH++RE L
Sbjct: 4   FAFDESFRLQGYNLIAGIDEAGRGCLAGPVVAACVSFRDSVFIEGIKDSKELSHEQRESL 63

Query: 72  YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           +++I   A + I       ID+ NI +AT  A+  A ENL       LID   +P  L  
Sbjct: 64  FQEIIKHAFVGIGIVDVDLIDRVNILEATRLAMMEAFENLGREIELLLIDAVELPA-LKV 122

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              A+IKGD  S SIA+ASI+AKVTRDR+MR  H+ YP YGFD H GY T +H   +K+ 
Sbjct: 123 DQKALIKGDRKSASIASASIVAKVTRDRIMRQYHEAYPMYGFDKHKGYGTKEHLNALKKF 182

Query: 192 GPSCIHRLTFRPLRNL 207
           GP  IHR +F P+R L
Sbjct: 183 GPCPIHRKSFSPVREL 198


>gi|238855692|ref|ZP_04645989.1| ribonuclease HII [Lactobacillus jensenii 269-3]
 gi|260664447|ref|ZP_05865299.1| ribonuclease HII [Lactobacillus jensenii SJ-7A-US]
 gi|282932206|ref|ZP_06337653.1| ribonuclease HII [Lactobacillus jensenii 208-1]
 gi|313472152|ref|ZP_07812644.1| ribonuclease HII [Lactobacillus jensenii 1153]
 gi|238831677|gb|EEQ24017.1| ribonuclease HII [Lactobacillus jensenii 269-3]
 gi|239529524|gb|EEQ68525.1| ribonuclease HII [Lactobacillus jensenii 1153]
 gi|260561512|gb|EEX27484.1| ribonuclease HII [Lactobacillus jensenii SJ-7A-US]
 gi|281303656|gb|EFA95811.1| ribonuclease HII [Lactobacillus jensenii 208-1]
          Length = 252

 Score =  158 bits (399), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 92/190 (48%), Positives = 120/190 (63%), Gaps = 7/190 (3%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           E+  W     VAG+DEVGRG LAGPVV AA++LD +     +NDSKK+S KKR ELY +I
Sbjct: 58  EQKAWAAGSIVAGVDEVGRGPLAGPVVTAAVVLDDSFDLVEVNDSKKLSPKKRLELYPRI 117

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
              A+ + I   S + IDK NI++A   A+  AV NL + P   L+D  ++P D+  +  
Sbjct: 118 LDKAVAVGIGVGSPELIDKINIYEADRVAMAQAVNNLALRPDLLLVDAMNVPVDI--KQI 175

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            +IKGDS S SIAAASI+AKV RD LM    K YP Y F+ + GY TAKH   +KE G +
Sbjct: 176 ELIKGDSKSNSIAAASIVAKVFRDELMNDYAKVYPQYDFEHNAGYGTAKHLAALKEFGAT 235

Query: 195 CIHRLTFRPL 204
            IHR +F P+
Sbjct: 236 PIHRRSFSPV 245


>gi|325689693|gb|EGD31697.1| ribonuclease HII [Streptococcus sanguinis SK115]
          Length = 254

 Score =  158 bits (399), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 90/203 (44%), Positives = 129/203 (63%), Gaps = 9/203 (4%)

Query: 12  FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
             LE M+R EK ++      +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  
Sbjct: 52  LRLEQMLRYEKELYQAGYRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPK 111

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KK +E+Y+ +   A+ + I    ++ ID+ NI++AT  A+  A+  L + P   LID   
Sbjct: 112 KKHQEIYQAVMDKALAVGIGLMDNEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMK 171

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +  ++P ++  +IKGD+ SLSIAAASI+AKVTRD+LM    K++P Y F  + GY T  H
Sbjct: 172 LDVEIPQES--IIKGDANSLSIAAASIVAKVTRDKLMTDYDKEFPGYDFAQNAGYGTKSH 229

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
            Q ++  G + IHR TF P++++
Sbjct: 230 LQGLERNGVTPIHRKTFEPIKSM 252


>gi|145638129|ref|ZP_01793739.1| ribonuclease HII [Haemophilus influenzae PittII]
 gi|145272458|gb|EDK12365.1| ribonuclease HII [Haemophilus influenzae PittII]
 gi|309751294|gb|ADO81278.1| Ribonuclease HII [Haemophilus influenzae R2866]
          Length = 197

 Score =  158 bits (399), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 118/182 (64%), Gaps = 1/182 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L E+I   A+  ++ 
Sbjct: 11  IAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKALAWALG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI +A+L A+  AV++L++ P   L+DG  IP+DL   A AV+KGDS+  
Sbjct: 71  RAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKGDSLVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR +F P+
Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAEFGALPQHRRSFAPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KK 192


>gi|28868754|ref|NP_791373.1| ribonuclease HII [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213969132|ref|ZP_03397271.1| ribonuclease HII [Pseudomonas syringae pv. tomato T1]
 gi|301383973|ref|ZP_07232391.1| ribonuclease HII [Pseudomonas syringae pv. tomato Max13]
 gi|302064141|ref|ZP_07255682.1| ribonuclease HII [Pseudomonas syringae pv. tomato K40]
 gi|302134068|ref|ZP_07260058.1| ribonuclease HII [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|37999586|sp|Q886M9|RNH2_PSESM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|28851993|gb|AAO55068.1| ribonuclease HII [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926130|gb|EEB59686.1| ribonuclease HII [Pseudomonas syringae pv. tomato T1]
 gi|331016381|gb|EGH96437.1| ribonuclease HII [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 217

 Score =  158 bits (399), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  KRE+L+ +I   A+   I+
Sbjct: 14  VAGVDEVGRGPLCGAVVTAAVILDPAKPILGLNDSKKLTEAKREKLFVEIQEKALCWFIA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AVE L + P+ ALIDG   P+ L   +  V+KGDS   
Sbjct: 74  RAEVEEIDQLNILHATMLAMKRAVEGLSITPKLALIDGNRCPQ-LSVPSAPVVKGDSKVP 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P+
Sbjct: 133 AIAAASILAKVSRDREMAALELIYPGYGIAGHKGYPTPVHLEALARLGPTPIHRRSFGPV 192

Query: 205 RN 206
           R 
Sbjct: 193 RT 194


>gi|330964157|gb|EGH64417.1| ribonuclease HII [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 217

 Score =  158 bits (399), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 88/181 (48%), Positives = 115/181 (63%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  KRE+L+ +I   A+   I+
Sbjct: 14  VAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEAKREKLFVEIQEKALCWFIA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AVE L + P+ ALIDG   P+ L   +  V+KGDS   
Sbjct: 74  RAEVEEIDQLNILHATMLAMKRAVEGLNITPKLALIDGNRCPQ-LSVPSAPVVKGDSKVP 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P+
Sbjct: 133 AIAAASILAKVSRDREMAALELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFGPV 192

Query: 205 R 205
           R
Sbjct: 193 R 193


>gi|269836504|ref|YP_003318732.1| Ribonuclease H [Sphaerobacter thermophilus DSM 20745]
 gi|269785767|gb|ACZ37910.1| Ribonuclease H [Sphaerobacter thermophilus DSM 20745]
          Length = 233

 Score =  158 bits (399), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 93/208 (44%), Positives = 132/208 (63%), Gaps = 7/208 (3%)

Query: 5   SIPER--PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDS 60
           S P R  P   +EA +  + +  VAG+DEVGRG +AGPVV AA IL P   +IP G+ DS
Sbjct: 18  STPGRTEPSIHIEAELWARGLRLVAGVDEVGRGCVAGPVVAAACILPPGIEDIP-GVRDS 76

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           K +S ++RE L E+I   A+ I + +AS + ID++NI +A+  A+  A+  L       L
Sbjct: 77  KTLSARQRERLAEEIRRVALGIGLGAASRREIDQYNIRQASALAMRRALARLGAWD-FVL 135

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
            DGR +PE  P +  AV+KGD+  LSIA ASI+AKVTRD LM    +++P+YG++ + GY
Sbjct: 136 YDGRPLPELDPERTMAVVKGDASCLSIACASILAKVTRDALMARLARRHPEYGWERNAGY 195

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
            TA+H   +   GP+  HR TF P+R+L
Sbjct: 196 GTAEHLDALLRVGPTPHHRRTFAPVRDL 223


>gi|56551900|ref|YP_162739.1| ribonuclease H [Zymomonas mobilis subsp. mobilis ZM4]
 gi|81355085|sp|Q5NNT2|RNH2_ZYMMO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|56543474|gb|AAV89628.1| Ribonuclease H [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 215

 Score =  158 bits (399), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 87/186 (46%), Positives = 122/186 (65%), Gaps = 5/186 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           V G+DEVGRG LAGPV+  A+ L   +IP GINDSKK++ ++R  L + + + A  +   
Sbjct: 26  VFGVDEVGRGPLAGPVMAGAVYLHREHIPEGINDSKKLTARRRHLLSDMLHNQADYATGM 85

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENL-QVI---PRSALIDGRSIPEDLPCQAFAVIKGDS 141
           A    ID+ NI +A+L A+  AVE L Q I   P   L+DGR IP D P  +  +IKGDS
Sbjct: 86  ADVHEIDRINIRQASLLAMKRAVEALIQKIGREPDCILVDGRDIP-DWPWPSLPIIKGDS 144

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +SLSIAAASI+AKV RD +M  A ++YP YG++ ++GYPT +H++ I+   P+  HR +F
Sbjct: 145 LSLSIAAASIVAKVERDEIMVKASQEYPGYGWEHNMGYPTKEHREAIQRLKPTKFHRRSF 204

Query: 202 RPLRNL 207
            P+R  
Sbjct: 205 SPIRQF 210


>gi|295676811|ref|YP_003605335.1| Ribonuclease H [Burkholderia sp. CCGE1002]
 gi|295436654|gb|ADG15824.1| Ribonuclease H [Burkholderia sp. CCGE1002]
          Length = 249

 Score =  158 bits (399), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 88/183 (48%), Positives = 118/183 (64%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAII-SI 83
           V G+DE GRG LAGPVV AA+I DP   +  G++DSK ++  KRE LY+KI   A+   +
Sbjct: 32  VCGVDEAGRGPLAGPVVAAAVIFDPTRPMIRGLDDSKALTALKREALYDKIVDRALAYCV 91

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SA+ + ID  NI  AT+ A+  AVE L V+P    IDG   P  L  ++ AVI GD++ 
Sbjct: 92  ASATVEEIDSLNILHATMLAMKRAVEGLSVVPTLVKIDGNRCPT-LSIRSEAVIGGDALV 150

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H  YP YGFD+H GY T +H   ++E GP   HR +F P
Sbjct: 151 KSISAASILAKVTRDRMLVELHHAYPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAP 210

Query: 204 LRN 206
           +R 
Sbjct: 211 VRE 213


>gi|116617876|ref|YP_818247.1| RNase HII [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|122271923|sp|Q03Y48|RNH2_LEUMM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|116096723|gb|ABJ61874.1| RNase HII [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 253

 Score =  158 bits (399), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 98/206 (47%), Positives = 128/206 (62%), Gaps = 9/206 (4%)

Query: 8   ERPHFELEAMVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62
           +R HF L     E+  W      +AG+DEVGRG LAGPVV AA+IL  +     + DSK+
Sbjct: 50  KREHF-LSRFDIERQYWMQGYDLIAGVDEVGRGPLAGPVVAAAVILPHDFDVLDVIDSKQ 108

Query: 63  ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           +S KKR+ELY+KI   AI I +       ID+ NI++A   A+  AV  L  IP + LID
Sbjct: 109 LSAKKRDELYDKIIEKAISIGVGRVEASIIDEINIYEAARVAMTEAVNQLAPIPEALLID 168

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
              +  DLP Q F +IKGD+ S SI AASIIAKVTRDRLM     KYP YGF+ + GY T
Sbjct: 169 AMRLDLDLP-QEF-LIKGDARSNSIGAASIIAKVTRDRLMASYGLKYPGYGFEKNAGYGT 226

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207
            +H + IK+ G + IHR TF P++++
Sbjct: 227 KEHLEGIKKIGITPIHRKTFAPIKDI 252


>gi|306829522|ref|ZP_07462712.1| ribonuclease HII [Streptococcus mitis ATCC 6249]
 gi|304428608|gb|EFM31698.1| ribonuclease HII [Streptococcus mitis ATCC 6249]
          Length = 259

 Score =  158 bits (399), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 94/208 (45%), Positives = 126/208 (60%), Gaps = 15/208 (7%)

Query: 13  ELEAMVREKNMWP------------VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           ELE  +R +NM              +AG+DEVGRG LAGPVV AA+IL  N    G+NDS
Sbjct: 47  ELEENLRLENMLSYEKELYKRGLTLIAGVDEVGRGPLAGPVVAAAVILPKNCKIRGLNDS 106

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           KKI  KK  E+Y+ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   L
Sbjct: 107 KKIPKKKHLEIYQAVQDQALAIGIGIMDNQVIDQVNIYEATKLAMKEAISQLTPQPEHLL 166

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           ID   +  DL     A+IKGD+ SLSIAAASI+AKVTRD LM    ++YP Y F ++ GY
Sbjct: 167 IDAMKL--DLSIYQTAIIKGDANSLSIAAASIVAKVTRDELMMEYDQQYPGYDFTANAGY 224

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
            TAKH + +++ G + IHR +F P++ L
Sbjct: 225 GTAKHLEGLEKLGVTPIHRTSFEPVKTL 252


>gi|257465535|ref|ZP_05629906.1| ribonuclease HII [Actinobacillus minor 202]
 gi|257451195|gb|EEV25238.1| ribonuclease HII [Actinobacillus minor 202]
          Length = 196

 Score =  158 bits (399), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 88/181 (48%), Positives = 118/181 (65%), Gaps = 4/181 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR +L E+I + A+  S+ 
Sbjct: 12  IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLSEKKRLKLSEEIKAKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            A  + ID+ NI  AT+ A+  AVE L + P   L+DG  IP  ++P QA  V+KGDS+ 
Sbjct: 72  RAEPEEIDQLNILHATMLAMQRAVEGLHIQPDFVLVDGNRIPTLNIPAQA--VVKGDSLV 129

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKV RD  M    K++P+YGF  H GYPT  H + + E G +  HR +F P
Sbjct: 130 QEISAASILAKVARDLEMDELDKQFPEYGFAKHKGYPTKLHFEKLTELGATPFHRKSFAP 189

Query: 204 L 204
           +
Sbjct: 190 V 190


>gi|295692915|ref|YP_003601525.1| ribonuclease hii [Lactobacillus crispatus ST1]
 gi|295031021|emb|CBL50500.1| Ribonuclease HII [Lactobacillus crispatus ST1]
          Length = 250

 Score =  158 bits (399), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 89/193 (46%), Positives = 123/193 (63%), Gaps = 7/193 (3%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           EK  W     VAG+DEVGRG LAGPVV AA+I+D +     +NDSKK+S +KR +LY KI
Sbjct: 58  EKKFWEKGQLVAGVDEVGRGPLAGPVVTAAVIIDQDFDLLDVNDSKKLSPEKRLKLYPKI 117

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
            + A+ + I   S + ID+ NI++A   A+  AV  L V P + L+D  ++P +LP    
Sbjct: 118 LAEAVSVGIGVKSAEVIDQINIYEADRQAMAQAVRALDVKPNALLVDAMNVPVNLP--QV 175

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            +IKGD+ S SIAAASI+AKV RD+LM    + YP Y F  + GY T +H + +K+ GP+
Sbjct: 176 KLIKGDAKSNSIAAASIVAKVFRDQLMDDYDRIYPQYCFHHNAGYGTKEHIEALKKYGPT 235

Query: 195 CIHRLTFRPLRNL 207
            IHR TF P+ + 
Sbjct: 236 LIHRKTFAPVSDF 248


>gi|71738075|ref|YP_275964.1| ribonuclease HII [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|298488346|ref|ZP_07006378.1| Ribonuclease HII [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|97189174|sp|Q48F73|RNH2_PSE14 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|71558628|gb|AAZ37839.1| Ribonuclease HII (RNase HII) [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|298157168|gb|EFH98256.1| Ribonuclease HII [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 222

 Score =  158 bits (399), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 88/181 (48%), Positives = 115/181 (63%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE+LY +I   A+   I+
Sbjct: 19  VAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLYVEIQEKALCWFIA 78

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AVE L + P+ ALIDG   P+ L   +  V+KGDS   
Sbjct: 79  RAEVEEIDQLNILHATMLAMKRAVEGLSITPKLALIDGNRCPQ-LSVPSAPVVKGDSRVP 137

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P+
Sbjct: 138 AIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 197

Query: 205 R 205
           R
Sbjct: 198 R 198


>gi|229528751|ref|ZP_04418141.1| ribonuclease HII [Vibrio cholerae 12129(1)]
 gi|229332525|gb|EEN98011.1| ribonuclease HII [Vibrio cholerae 12129(1)]
          Length = 206

 Score =  158 bits (399), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 93/200 (46%), Positives = 123/200 (61%), Gaps = 7/200 (3%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E P FE+ A         +AG+DEVGRG L G VV AA+ILDP+    G+NDSKK+S KK
Sbjct: 8   ELPPFEIPA-----GYALIAGVDEVGRGPLVGDVVTAAVILDPHRPIVGLNDSKKLSEKK 62

Query: 68  REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L+ +I   A+  ++   S Q ID+ NI +AT+ A+  AV  L++ P   LIDG  IP
Sbjct: 63  RLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNKIP 122

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           + LP +A AV+KGD     I+AASIIAKV RD+ M    K+YP +GF  H GYPTA H  
Sbjct: 123 K-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAHFA 181

Query: 187 VIKEKGPSCIHRLTFRPLRN 206
            I++ G    HR +F P++ 
Sbjct: 182 AIEQHGVIEQHRKSFGPVKR 201


>gi|282852052|ref|ZP_06261410.1| ribonuclease HII [Lactobacillus gasseri 224-1]
 gi|282556812|gb|EFB62416.1| ribonuclease HII [Lactobacillus gasseri 224-1]
          Length = 250

 Score =  158 bits (399), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 88/190 (46%), Positives = 125/190 (65%), Gaps = 7/190 (3%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           EK  W     VAG+DEVGRG LAGPVV AA+IL  N     +NDSKK+S KKR+EL+ KI
Sbjct: 58  EKKFWQKSQLVAGVDEVGRGPLAGPVVTAAVILPHNFDLIDVNDSKKLSPKKRKELFPKI 117

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
            + A+ + +  A++  ID+ NI++A   A+ HAV+ L+V P + L+D  ++P ++P    
Sbjct: 118 LAKAVSVGVGLANNDVIDRINIYEADRLAMAHAVQGLKVKPDALLVDAMNVPLNIP--QV 175

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            +I GD+ S SIAAASI+AKV RD LM    + YP+Y F  + GY T +H + +K+ GP+
Sbjct: 176 KLIHGDAKSNSIAAASIVAKVFRDNLMDAYGEVYPEYDFKHNAGYGTREHMEALKKYGPT 235

Query: 195 CIHRLTFRPL 204
            IHR +F P+
Sbjct: 236 PIHRRSFAPV 245


>gi|289626020|ref|ZP_06458974.1| ribonuclease HII [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|330868556|gb|EGH03265.1| ribonuclease HII [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 217

 Score =  157 bits (398), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 88/181 (48%), Positives = 115/181 (63%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE+LY +I   A+   I+
Sbjct: 14  VAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLYVEIQEKALCWFIA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AVE L + P+ ALIDG   P+ L   +  V+KGDS   
Sbjct: 74  RAEVEEIDQLNILHATMLAMKRAVEGLSITPKLALIDGNRCPQ-LSVPSAPVVKGDSRVP 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P+
Sbjct: 133 AIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 192

Query: 205 R 205
           R
Sbjct: 193 R 193


>gi|331091010|ref|ZP_08339852.1| hypothetical protein HMPREF9477_00495 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405232|gb|EGG84768.1| hypothetical protein HMPREF9477_00495 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 252

 Score =  157 bits (398), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 95/197 (48%), Positives = 124/197 (62%), Gaps = 6/197 (3%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           I E   +E E  + E     + GIDEVGRG LAGPVV  A+IL  + +   +NDSKK+S 
Sbjct: 56  IEEMSRYEQENCMEEY----ICGIDEVGRGPLAGPVVAGAVILPKDEMILYLNDSKKLSE 111

Query: 66  KKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KKREELY+ I   A+ + I   S   ID+ NI +AT +A+  A++NL+V P   L D  +
Sbjct: 112 KKREELYDIIMERAVAAGIGIVSPARIDEINILQATYEAMRMAIDNLKVQPTLLLNDAVT 171

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           IP  +  +   +IKGD+ S+SIAAASIIAKVTRDRLM+   K  P Y F S+ GY +A H
Sbjct: 172 IP-SVNIRQIPIIKGDAKSVSIAAASIIAKVTRDRLMKEYDKVIPGYDFASNKGYGSAAH 230

Query: 185 QQVIKEKGPSCIHRLTF 201
            Q +KE G + IHR TF
Sbjct: 231 IQALKENGATLIHRKTF 247


>gi|307249333|ref|ZP_07531327.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|307251656|ref|ZP_07533561.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307256154|ref|ZP_07537941.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|307262716|ref|ZP_07544344.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|306858627|gb|EFM90689.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306860853|gb|EFM92861.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306865335|gb|EFM97231.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306871971|gb|EFN03687.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 186

 Score =  157 bits (398), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 88/183 (48%), Positives = 118/183 (64%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L E+I + A+  S+ 
Sbjct: 2   IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLLLAEEIKAKALCWSLG 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L + P   L+DG  IP  LP  A AVIKGDS+  
Sbjct: 62  RAEPEEIDRLNILHATMLAMQRAVAGLNIQPDFVLVDGNRIP-TLPMPAQAVIKGDSLVA 120

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M     +YP+YGF  H GYPT  H + +++ G +  HR +F P+
Sbjct: 121 EISAASILAKVARDQEMAELDVQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKSFAPV 180

Query: 205 RNL 207
           + +
Sbjct: 181 KKI 183


>gi|325687470|gb|EGD29491.1| ribonuclease HII [Streptococcus sanguinis SK72]
          Length = 254

 Score =  157 bits (398), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 90/203 (44%), Positives = 129/203 (63%), Gaps = 9/203 (4%)

Query: 12  FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
             LE M+R EK ++      +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  
Sbjct: 52  LRLEQMLRYEKELYQAGHLAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPK 111

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KK +E+Y+++   A+ + I     + ID+ NI++AT  A+  A+  L + P   LID   
Sbjct: 112 KKHQEIYKEVMDKALAVGIGLMDSEMIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMK 171

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +  ++P ++  +IKGD+ SLSIAAASI+AKVTRD+LM    K++P Y F  + GY T  H
Sbjct: 172 LDVEIPQES--IIKGDANSLSIAAASIVAKVTRDKLMTDYDKEFPGYDFAKNAGYGTKSH 229

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
            Q ++  G + IHR TF P++++
Sbjct: 230 LQGLERNGVTPIHRKTFEPVKSM 252


>gi|76787278|ref|YP_329728.1| ribonuclease HII [Streptococcus agalactiae A909]
 gi|77406999|ref|ZP_00784013.1| ribonuclease HII [Streptococcus agalactiae H36B]
 gi|97189340|sp|Q3K175|RNH2_STRA1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|76562335|gb|ABA44919.1| ribonuclease HII [Streptococcus agalactiae A909]
 gi|77174385|gb|EAO77240.1| ribonuclease HII [Streptococcus agalactiae H36B]
          Length = 253

 Score =  157 bits (398), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 91/199 (45%), Positives = 126/199 (63%), Gaps = 8/199 (4%)

Query: 15  EAMVREKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           + +V EK ++      +AGIDEVGRG LAGPVV AA+IL PN     +NDSKKI  KK +
Sbjct: 56  QMLVYEKKLYIEHINLIAGIDEVGRGPLAGPVVAAAVILPPNCKIKHLNDSKKIPKKKHQ 115

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           E+Y+ I   A+ + I     Q ID  NI++AT  A+  AV +L V+P   LID   +  D
Sbjct: 116 EIYQNILDQALAVGIGIQDSQCIDDINIYEATKHAMIDAVSHLSVVPEHLLIDAMVL--D 173

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LP     +IKGD+ SLSIAAASI+AKVTRD++M     KYP Y F  + GY T +H + +
Sbjct: 174 LPIPQTKIIKGDANSLSIAAASIVAKVTRDKIMSDYDSKYPGYAFSKNAGYGTKEHLEGL 233

Query: 189 KEKGPSCIHRLTFRPLRNL 207
           ++ G + IHR +F P++++
Sbjct: 234 QKYGITPIHRKSFEPIKSM 252


>gi|322387852|ref|ZP_08061460.1| ribonuclease HII [Streptococcus infantis ATCC 700779]
 gi|321141354|gb|EFX36851.1| ribonuclease HII [Streptococcus infantis ATCC 700779]
          Length = 259

 Score =  157 bits (398), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 92/203 (45%), Positives = 130/203 (64%), Gaps = 9/203 (4%)

Query: 11  HFELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           +  LEAM+  EK ++      +AG+DEVGRG LAGPVV AA+IL  N    G+NDSKKI 
Sbjct: 51  NLRLEAMLSYEKELYIQGINLIAGVDEVGRGPLAGPVVAAAVILPQNCKIKGLNDSKKIP 110

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            KK EE+++ +  +A+ I I    +  ID+ NI++AT  A+  A+  L+  P   LID  
Sbjct: 111 KKKHEEIFQAVKENALAIGIGIMDNHVIDQVNIYEATKLAMNEAISQLEPQPEHLLIDAM 170

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +  DLP    ++IKGD+ SLSIAAASIIAKVTRD++M    +++P Y F  + GY TAK
Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIIAKVTRDKIMANYDEEFPGYDFAQNAGYGTAK 228

Query: 184 HQQVIKEKGPSCIHRLTFRPLRN 206
           H + I++ G + IHR +F P++ 
Sbjct: 229 HIEGIEKHGVTPIHRTSFEPIKT 251


>gi|257487068|ref|ZP_05641109.1| ribonuclease HII [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289651463|ref|ZP_06482806.1| ribonuclease HII [Pseudomonas syringae pv. aesculi str. 2250]
 gi|320323106|gb|EFW79195.1| ribonuclease HII [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329622|gb|EFW85611.1| ribonuclease HII [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330878151|gb|EGH12300.1| ribonuclease HII [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330894608|gb|EGH27269.1| ribonuclease HII [Pseudomonas syringae pv. mori str. 301020]
 gi|330985124|gb|EGH83227.1| ribonuclease HII [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 217

 Score =  157 bits (398), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 88/181 (48%), Positives = 115/181 (63%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE+LY +I   A+   I+
Sbjct: 14  VAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLYVEIQEKALCWFIA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AVE L + P+ ALIDG   P+ L   +  V+KGDS   
Sbjct: 74  RAEVEEIDQLNILHATMLAMKRAVEGLSITPKLALIDGNRCPQ-LSVPSAPVVKGDSRVP 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P+
Sbjct: 133 AIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 192

Query: 205 R 205
           R
Sbjct: 193 R 193


>gi|15903088|ref|NP_358638.1| ribonuclease HII [Streptococcus pneumoniae R6]
 gi|116515974|ref|YP_816494.1| ribonuclease HII [Streptococcus pneumoniae D39]
 gi|148985764|ref|ZP_01818892.1| ribonuclease HII [Streptococcus pneumoniae SP3-BS71]
 gi|32171635|sp|Q8DPR3|RNH2_STRR6 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|122278620|sp|Q04KF4|RNH2_STRP2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|15458664|gb|AAK99848.1| Ribonuclease H [Streptococcus pneumoniae R6]
 gi|116076550|gb|ABJ54270.1| ribonuclease HII [Streptococcus pneumoniae D39]
 gi|147922068|gb|EDK73191.1| ribonuclease HII [Streptococcus pneumoniae SP3-BS71]
 gi|301800096|emb|CBW32697.1| ribonuclease HII [Streptococcus pneumoniae OXC141]
          Length = 259

 Score =  157 bits (398), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 91/204 (44%), Positives = 129/204 (63%), Gaps = 9/204 (4%)

Query: 11  HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           +  LE+M+  EK ++      + GIDEVGRG LAGPVV AA+IL  N    G+NDSKKI 
Sbjct: 51  NLRLESMLSYEKELYKQGLTLIVGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            KK  E+++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID  
Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +  DLP    ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAK
Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAK 228

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H + + + G + IHR +F P+++L
Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252


>gi|322375250|ref|ZP_08049763.1| ribonuclease HII [Streptococcus sp. C300]
 gi|321279513|gb|EFX56553.1| ribonuclease HII [Streptococcus sp. C300]
          Length = 259

 Score =  157 bits (398), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 93/203 (45%), Positives = 127/203 (62%), Gaps = 9/203 (4%)

Query: 12  FELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
             LE+M+  EK ++      +AG+DEVGRG LAGPVV AA+IL  N    G+NDSKKI  
Sbjct: 52  LRLESMLSYEKELYKQGVALIAGVDEVGRGPLAGPVVAAAVILPKNCKINGLNDSKKIPK 111

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KK  E+Y  +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID   
Sbjct: 112 KKHLEIYHAVQDQALAIGIGIMDNQVIDQVNIYEATKLAMKEAISQLSPQPDHLLIDAMK 171

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +  DL     A+IKGD+ SLSIAAASI+AKVTRD LM+   ++YP Y F ++ GY TAKH
Sbjct: 172 L--DLSISQTAIIKGDANSLSIAAASIVAKVTRDELMKEYDQQYPGYDFTANAGYGTAKH 229

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
            + +++ G + IHR +F P++ L
Sbjct: 230 LEGLEKLGVTPIHRTSFEPVKTL 252


>gi|168492508|ref|ZP_02716651.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC0288-04]
 gi|168493082|ref|ZP_02717225.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC3059-06]
 gi|221231870|ref|YP_002511022.1| ribonuclease HII [Streptococcus pneumoniae ATCC 700669]
 gi|225854632|ref|YP_002736144.1| ribonuclease HII [Streptococcus pneumoniae JJA]
 gi|254807990|sp|B8ZQ37|RNH2_STRPJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807992|sp|C1CEC3|RNH2_STRZJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|183573321|gb|EDT93849.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC0288-04]
 gi|183576643|gb|EDT97171.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC3059-06]
 gi|220674330|emb|CAR68876.1| ribonuclease HII [Streptococcus pneumoniae ATCC 700669]
 gi|225722957|gb|ACO18810.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae JJA]
          Length = 259

 Score =  157 bits (398), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 91/204 (44%), Positives = 129/204 (63%), Gaps = 9/204 (4%)

Query: 11  HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           +  LE+M+  EK ++      + GIDEVGRG LAGPVV AA+IL  N    G+NDSKKI 
Sbjct: 51  NLRLESMLSYEKELYKQGLTLIVGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            KK  E+++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID  
Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +  DLP    ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAK
Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAK 228

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H + + + G + IHR +F P+++L
Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252


>gi|327392811|dbj|BAK10233.1| ribonuclease HII RnhB [Pantoea ananatis AJ13355]
          Length = 231

 Score =  157 bits (398), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 90/208 (43%), Positives = 122/208 (58%), Gaps = 6/208 (2%)

Query: 4   NSIPERPHFELEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGIND 59
            ++  +P     ++     ++P    +AG+DEVGRG L G VV AA+ILDP N   G+ D
Sbjct: 9   GTLTNKPQMRCWSLPMADFIYPAAGCIAGVDEVGRGPLVGAVVTAAVILDPANPVPGLAD 68

Query: 60  SKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118
           SKK+S K+R  L+++I   A+  S+  A    ID  NI  AT+ A+  AV  L + P   
Sbjct: 69  SKKLSEKRRLALFDQIKEKALAWSLGRAEPDEIDNLNILHATMLAMQRAVAGLSITPDFV 128

Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
           LIDG   P  LP  + AV+KGDS+   I+AASIIAKVTRDR M      +P YGF  H G
Sbjct: 129 LIDGNRCPA-LPMPSLAVVKGDSLVAEISAASIIAKVTRDREMAELDLLFPQYGFAQHKG 187

Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           YPTA H + + + G +  HR +F P+RN
Sbjct: 188 YPTALHMEKLTQYGATPHHRRSFAPVRN 215


>gi|325121486|gb|ADY81009.1| RNAse HII [Acinetobacter calcoaceticus PHEA-2]
          Length = 188

 Score =  157 bits (398), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 84/183 (45%), Positives = 120/183 (65%), Gaps = 5/183 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DE GRG L G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I   A+  SI+
Sbjct: 3   IAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWSIA 62

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--PCQAFAVIKGDSI 142
            A+H  ID+ NI +AT  A+  AV+ L+  P+  ++DG  IP+ +  PC+A  ++ GD+ 
Sbjct: 63  EATHAEIDELNILQATFLAMQRAVDGLKTQPQKVIVDGNQIPKGIIIPCEA--IVGGDAS 120

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRDR M    ++YP +GF  H GYPT  H + I   G    HR ++ 
Sbjct: 121 HAEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAVHGVIDQHRRSYA 180

Query: 203 PLR 205
           P++
Sbjct: 181 PVK 183


>gi|302872177|ref|YP_003840813.1| Ribonuclease H [Caldicellulosiruptor obsidiansis OB47]
 gi|302575036|gb|ADL42827.1| Ribonuclease H [Caldicellulosiruptor obsidiansis OB47]
          Length = 206

 Score =  157 bits (398), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 85/198 (42%), Positives = 128/198 (64%), Gaps = 4/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           +FE+E  +  +    + G+DE GRG LAGPV  AA+++D   I  G+ DSKK++ KKRE+
Sbjct: 9   YFEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREK 68

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L+E+I   +I  S++    + ID+ NI+ AT   + +A+ENL++ P   L+DG  IP +L
Sbjct: 69  LFEEIIKGSIAYSVAMVDSKIIDEININNATFLVMKNAIENLKIEPDIVLVDGYEIP-NL 127

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                A+IKGD  S SIA ASI+AKV+RDR +     KYP Y F+ H GY T +H ++++
Sbjct: 128 NFNQRAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPLYKFEKHKGYGTKEHIEILQ 187

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + GP  IHR++F  L+N+
Sbjct: 188 KYGPCEIHRISF--LKNI 203


>gi|71907386|ref|YP_284973.1| ribonuclease HII/HIII [Dechloromonas aromatica RCB]
 gi|97182398|sp|Q47F78|RNH2_DECAR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|71847007|gb|AAZ46503.1| RNase HII [Dechloromonas aromatica RCB]
          Length = 196

 Score =  157 bits (398), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 96/187 (51%), Positives = 125/187 (66%), Gaps = 5/187 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           V GIDE GRG LAGPVV AA+ILDP     G+NDSKK+S KKR+ L E I   A+  +++
Sbjct: 11  VCGIDEAGRGPLAGPVVAAAVILDPERPIVGLNDSKKLSEKKRDALAEIIRERALAWAVA 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            A+ + ID+ NI +AT+ A+  AV  LQV   SAL+DG   P+ D+PC+A  V+KGD   
Sbjct: 71  EATVEEIDRLNILQATMLAMQRAVAALQVKAESALVDGNRCPKLDIPCEA--VVKGDGKI 128

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SIAAASI+AK  RD  M + H +YP YGFD H+GYPTA H   ++  G S +HR +F P
Sbjct: 129 ASIAAASILAKTVRDAGMLVLHAQYPHYGFDRHMGYPTAAHFAALEAHGASPVHRRSFGP 188

Query: 204 L-RNLSV 209
           + R LS+
Sbjct: 189 VARQLSL 195


>gi|332360459|gb|EGJ38270.1| ribonuclease HII [Streptococcus sanguinis SK355]
          Length = 254

 Score =  157 bits (398), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 90/201 (44%), Positives = 129/201 (64%), Gaps = 9/201 (4%)

Query: 14  LEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           LE M+R EK ++      +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  KK
Sbjct: 54  LEQMLRYEKELYQAGYLAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKK 113

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
            +E+Y+++   A+ + I     + ID+ NI++AT  A+  A+  L + P   LID   + 
Sbjct: 114 HQEIYKEVMDKALAVGIGLMDSEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKLD 173

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            ++P ++  +IKGD+ SLSIAAAS++AKVTRD+LM    K+YP Y F  + GY T  H Q
Sbjct: 174 VEIPQES--IIKGDANSLSIAAASVVAKVTRDKLMADYDKEYPGYDFAKNAGYGTKSHLQ 231

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            ++  G + IHR TF P++++
Sbjct: 232 GLERNGVTPIHRKTFEPVKSM 252


>gi|165975585|ref|YP_001651178.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|190149400|ref|YP_001967925.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|303249833|ref|ZP_07336037.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|238687515|sp|B0BS34|RNH2_ACTPJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238692371|sp|B3GZX1|RNH2_ACTP7 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|165875686|gb|ABY68734.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|189914531|gb|ACE60783.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|302651400|gb|EFL81552.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 197

 Score =  157 bits (398), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 88/183 (48%), Positives = 118/183 (64%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L E+I + A+  S+ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLLLAEEIKAKALCWSLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L + P   L+DG  IP  LP  A AVIKGDS+  
Sbjct: 73  RAEPEEIDRLNILHATMLAMQRAVAGLNIQPDFVLVDGNRIP-TLPMPAQAVIKGDSLVA 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M     +YP+YGF  H GYPT  H + +++ G +  HR +F P+
Sbjct: 132 EISAASILAKVARDQEMAELDVQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKSFAPV 191

Query: 205 RNL 207
           + +
Sbjct: 192 KKI 194


>gi|317493174|ref|ZP_07951597.1| ribonuclease HII [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918834|gb|EFV40170.1| ribonuclease HII [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 207

 Score =  157 bits (398), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 87/183 (47%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LYE+I   A+  S+ 
Sbjct: 23  IAGVDEVGRGPLVGAVVTAAVILDPARPIIGLADSKKLSEKRRNALYEEIVEKALSWSLG 82

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L V P   LIDG   P+ LP  + AV+KGDS   
Sbjct: 83  RAEPHEIDELNILHATMLAMQRAVAGLSVEPDYVLIDGNRCPK-LPMASQAVVKGDSRVA 141

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M +   ++P+YGF  H GYPTA H + + + G +  HR +F P+
Sbjct: 142 EISAASILAKVTRDREMEVLDAQFPEYGFAQHKGYPTAFHLERLAQLGATVHHRRSFGPV 201

Query: 205 RNL 207
           + +
Sbjct: 202 KRV 204


>gi|256851135|ref|ZP_05556524.1| ribonuclease HII [Lactobacillus jensenii 27-2-CHN]
 gi|260660559|ref|ZP_05861474.1| ribonuclease HII [Lactobacillus jensenii 115-3-CHN]
 gi|282934516|ref|ZP_06339770.1| ribonuclease HII [Lactobacillus jensenii 208-1]
 gi|297206001|ref|ZP_06923396.1| ribonuclease H [Lactobacillus jensenii JV-V16]
 gi|256616197|gb|EEU21385.1| ribonuclease HII [Lactobacillus jensenii 27-2-CHN]
 gi|260548281|gb|EEX24256.1| ribonuclease HII [Lactobacillus jensenii 115-3-CHN]
 gi|281301409|gb|EFA93699.1| ribonuclease HII [Lactobacillus jensenii 208-1]
 gi|297149127|gb|EFH29425.1| ribonuclease H [Lactobacillus jensenii JV-V16]
          Length = 252

 Score =  157 bits (398), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 93/190 (48%), Positives = 120/190 (63%), Gaps = 7/190 (3%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           E+  W     VAG+DEVGRG LAGPVV AA+ILD +     +NDSKK+S KKR ELY +I
Sbjct: 58  EQKAWKAGSIVAGVDEVGRGPLAGPVVTAAVILDDSFDLVEVNDSKKLSPKKRLELYPQI 117

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
              A+ + I   S + ID+ NI++A   A+  AV NL + P   L+D  ++P D+  +  
Sbjct: 118 LDKAVAVGIGVGSPELIDRINIYEADRVAMAQAVNNLAIKPDLLLVDAMNVPVDI--KQI 175

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            +IKGDS S SIAAASIIAKV RD LM    K YP Y F+ + GY TAKH   +KE G +
Sbjct: 176 ELIKGDSKSNSIAAASIIAKVFRDELMNDYAKVYPQYDFEHNAGYGTAKHIAALKEFGAT 235

Query: 195 CIHRLTFRPL 204
            IHR +F P+
Sbjct: 236 PIHRRSFSPV 245


>gi|167769415|ref|ZP_02441468.1| hypothetical protein ANACOL_00745 [Anaerotruncus colihominis DSM
           17241]
 gi|167668383|gb|EDS12513.1| hypothetical protein ANACOL_00745 [Anaerotruncus colihominis DSM
           17241]
          Length = 200

 Score =  157 bits (398), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 121/201 (60%), Gaps = 7/201 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +E E   R +    V G+DE GRG LAG V  AA+IL P     G+NDSKK+S K+RE L
Sbjct: 4   YEFEQAARREGYAAVCGVDEAGRGPLAGDVYAAAVILPPGLELAGVNDSKKLSEKRREAL 63

Query: 72  YEKIT-SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--ED 128
           Y  IT  +A   ++SAS + I++ NI +A+L A+  AVE L V    AL+DG   P  E 
Sbjct: 64  YGVITEQAAAWCVASASVEEIERLNILQASLLAMRRAVEGLGVRADFALVDGNRDPHFEG 123

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           +PC+   ++ GD  S S+AAASI+AKVTRDR M     +YP YGF+ H GY T  H++ +
Sbjct: 124 VPCKT--IVGGDGKSASVAAASILAKVTRDRYMEQLAARYPQYGFERHKGYGTQAHREAL 181

Query: 189 KEKGPSCIHRLTFRPLRNLSV 209
            + GP   HR  F  LR L +
Sbjct: 182 LKYGPCPAHRKLF--LRRLGL 200


>gi|239826598|ref|YP_002949222.1| ribonuclease H [Geobacillus sp. WCH70]
 gi|259494066|sp|C5D8U9|RNH2_GEOSW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|239806891|gb|ACS23956.1| Ribonuclease H [Geobacillus sp. WCH70]
          Length = 277

 Score =  157 bits (398), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 89/194 (45%), Positives = 124/194 (63%), Gaps = 3/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  + E+ +  +AGIDE GRG LAGPVV AA++L  +    G+NDSKK+S  KRE L+  
Sbjct: 63  ERQLFEQGIEYIAGIDEAGRGPLAGPVVAAAVMLPKDAYIPGLNDSKKLSEAKREMLFHM 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I S AI I I   +   ID+ NI++AT  A+  AVE L   P   LID  ++P   P Q+
Sbjct: 123 IQSCAISIGIGVVTAAEIDEMNIYEATKKAMIKAVEQLSPKPDYLLIDAMTLPISTPQQS 182

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             ++KGD+ S+SIAA+SIIAKVTRD  M+   K+YP YGF+ ++GY TA+H + I+  G 
Sbjct: 183 --IVKGDANSVSIAASSIIAKVTRDHFMKQLAKQYPQYGFEKNMGYGTAQHLEAIRVYGT 240

Query: 194 SCIHRLTFRPLRNL 207
              HR +F P++ +
Sbjct: 241 IDEHRRSFSPIKEM 254


>gi|291616360|ref|YP_003519102.1| RnhB [Pantoea ananatis LMG 20103]
 gi|291151390|gb|ADD75974.1| RnhB [Pantoea ananatis LMG 20103]
          Length = 215

 Score =  157 bits (398), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 113/182 (62%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP N   G+ DSKK+S K+R  L+++I   A+  S+ 
Sbjct: 19  IAGVDEVGRGPLVGAVVTAAVILDPANPVPGLADSKKLSEKRRLALFDQIKEKALAWSLG 78

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID  NI  AT+ A+  AV  L + P   LIDG   P  LP  + AV+KGDS+  
Sbjct: 79  RAEPDEIDNLNILHATMLAMQRAVAGLSITPDFVLIDGNRCPA-LPMPSLAVVKGDSLVA 137

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKVTRDR M      +P YGF  H GYPTA H + + + G +  HR +F P+
Sbjct: 138 EISAASIIAKVTRDREMAELDLLFPQYGFAQHKGYPTALHMEKLTQYGATPHHRRSFAPV 197

Query: 205 RN 206
           RN
Sbjct: 198 RN 199


>gi|171059517|ref|YP_001791866.1| ribonuclease HII [Leptothrix cholodnii SP-6]
 gi|170776962|gb|ACB35101.1| Ribonuclease H [Leptothrix cholodnii SP-6]
          Length = 218

 Score =  157 bits (398), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 85/182 (46%), Positives = 121/182 (66%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DE GRG LAGPVV AA+ILD      G+ DSK ++ ++RE L+++I + A+   I+
Sbjct: 26  MAGVDEAGRGPLAGPVVAAAVILDELQPIAGLADSKILTERRRERLFDEIRAKALAFCIA 85

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID+ NI +AT+ A+  AVE L++ P   L+DG  +P  L   A A++KGD+   
Sbjct: 86  QASVEEIDRLNILQATMLAMKRAVEGLRLKPAQVLVDGNRVPV-LRIPAEAIVKGDAKVP 144

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKV RDRL +  H+ YP YGF  H GYPTA H Q +K+ GP   HR ++ P+
Sbjct: 145 AISAASILAKVHRDRLCQALHELYPHYGFAVHKGYPTAAHLQALKDHGPCESHRKSYAPV 204

Query: 205 RN 206
           R 
Sbjct: 205 RE 206


>gi|50084434|ref|YP_045944.1| ribonuclease HII [Acinetobacter sp. ADP1]
 gi|73917594|sp|Q6FCT7|RNH2_ACIAD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|49530410|emb|CAG68122.1| RNAse HII [Acinetobacter sp. ADP1]
          Length = 189

 Score =  157 bits (398), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 84/181 (46%), Positives = 118/181 (65%), Gaps = 1/181 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DE GRG L G VV AA+ILDP+N   G+NDSKK++ KKRE+L+ +I   A+  SI+
Sbjct: 2   IAGVDEAGRGPLVGSVVAAAVILDPHNPIDGLNDSKKLTEKKREKLFVEIQEKALAWSIA 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A+H  ID+ NI +AT  A+  AV+ LQ+ P   L+DG  IP+ +     A++ GD+   
Sbjct: 62  EANHIEIDELNILQATFLAMRRAVDGLQIQPDKVLVDGNQIPKGISIHCEAIVGGDASHA 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M++  +KYP +GF  H GYPT  H Q I   G    HR ++ P+
Sbjct: 122 EISAASILAKVYRDQQMKLLDEKYPLFGFAKHKGYPTKAHFQAIAIHGVVDEHRRSYAPV 181

Query: 205 R 205
           R
Sbjct: 182 R 182


>gi|37524687|ref|NP_928031.1| ribonuclease HII [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|39932267|sp|Q7N8N3|RNH2_PHOLL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|36784112|emb|CAE12981.1| Ribonuclease HII (RNase HII) [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 196

 Score =  157 bits (398), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 89/182 (48%), Positives = 116/182 (63%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+RE LY +IT  A+  S+ 
Sbjct: 11  IAGVDEVGRGPLVGAVVTAAVILDPLQPIVGLADSKKLSEKRREALYLEITEKALCWSLG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV NL + P   LIDG   P+ LP  A AVIKGD +  
Sbjct: 71  RAEPAEIDQLNILHATMLAMQRAVANLPISPEYVLIDGNRCPK-LPMPAQAVIKGDGLVA 129

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M    + +P+YGF  H GYPTA H + + + G +  HR +F P+
Sbjct: 130 EISAASIVAKVTRDREMAELDQLFPEYGFAKHKGYPTAFHLEKLVQLGATEHHRKSFAPV 189

Query: 205 RN 206
           + 
Sbjct: 190 KR 191


>gi|149192146|ref|ZP_01870367.1| ribonuclease HII [Vibrio shilonii AK1]
 gi|148834016|gb|EDL51032.1| ribonuclease HII [Vibrio shilonii AK1]
          Length = 208

 Score =  157 bits (398), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 88/181 (48%), Positives = 115/181 (63%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L G +V AA+ILDPNN   G+NDSKK+S KKR  LY +I   A+  ++ 
Sbjct: 22  VAGVDEVGRGPLVGDIVTAAVILDPNNPIEGLNDSKKLSEKKRLALYPEIKEKALAWAVG 81

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S   ID+ NI +AT+ A+  AV  LQV P   LIDG   P  LP  A AV+KGD    
Sbjct: 82  RCSPTEIDELNILQATMVAMQRAVAGLQVQPDMVLIDGNRTPT-LPMDAQAVVKGDLRVA 140

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKV RD+ M    +++P +GF  H GYPT  H + I++ G    HR +F+P+
Sbjct: 141 EISAASIIAKVVRDQEMEELDQQHPQFGFAKHKGYPTKAHFEAIEQHGVIAEHRKSFKPV 200

Query: 205 R 205
           +
Sbjct: 201 K 201


>gi|16272990|ref|NP_439217.1| ribonuclease HII [Haemophilus influenzae Rd KW20]
 gi|260580145|ref|ZP_05847975.1| ribonuclease HII [Haemophilus influenzae RdAW]
 gi|1173096|sp|P43808|RNH2_HAEIN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|1574610|gb|AAC22714.1| ribonuclease HII (rnhB) [Haemophilus influenzae Rd KW20]
 gi|260093429|gb|EEW77362.1| ribonuclease HII [Haemophilus influenzae RdAW]
          Length = 197

 Score =  157 bits (398), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 117/182 (64%), Gaps = 1/182 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84
           +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L E+I   A   ++ 
Sbjct: 11  IAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKARAWALG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI +A+L A+  AV++L++ P   LIDG  IP+DL   A AV+KGDS+  
Sbjct: 71  RAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLIDGNKIPKDLAIPAQAVVKGDSLVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR +F P+
Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRRSFAPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KK 192


>gi|327474218|gb|EGF19625.1| ribonuclease HII [Streptococcus sanguinis SK408]
          Length = 254

 Score =  157 bits (397), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 90/203 (44%), Positives = 128/203 (63%), Gaps = 9/203 (4%)

Query: 12  FELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
             LE M+R EK ++      +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  
Sbjct: 52  LRLEQMLRYEKELYQAGYQRIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPK 111

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KK +E+Y+ +   A+ + I     + ID+ NI++AT  A+  A+  L + P   LID   
Sbjct: 112 KKHQEIYQAVMDKALAVGIGLMDSEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMK 171

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +  ++P ++  +IKGD+ SLSIAAASI+AKVTRD+LM    K++P Y F  + GY T  H
Sbjct: 172 LDVEIPQES--IIKGDANSLSIAAASIVAKVTRDKLMTDYDKEFPGYDFAQNAGYGTKSH 229

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
            Q ++  G + IHR TF P++++
Sbjct: 230 LQGLERNGVTPIHRKTFEPVKSM 252


>gi|294635136|ref|ZP_06713646.1| ribonuclease HII [Edwardsiella tarda ATCC 23685]
 gi|291091472|gb|EFE24033.1| ribonuclease HII [Edwardsiella tarda ATCC 23685]
          Length = 197

 Score =  157 bits (397), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 88/183 (48%), Positives = 115/183 (62%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++I   A+  S+ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPARPIRGLADSKKLSEKRRNALYDEIVEKALCWSLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI +AT+ A+  AV  L + P   LIDG   P  LP  A AV+KGDS   
Sbjct: 73  RAEPEEIDRLNILQATMVAMQRAVAGLTLPPDLVLIDGNRCPA-LPMAAQAVVKGDSRVA 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M    ++YP YGF  H GYPTA H   + E G +  HR +F P+
Sbjct: 132 EISAASILAKVTRDREMAALDRQYPAYGFAQHKGYPTALHLARLAELGATDQHRRSFAPV 191

Query: 205 RNL 207
           + +
Sbjct: 192 KRV 194


>gi|113461500|ref|YP_719569.1| ribonuclease HII [Haemophilus somnus 129PT]
 gi|122945377|sp|Q0I4M6|RNH2_HAES1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|112823543|gb|ABI25632.1| RNase HII [Haemophilus somnus 129PT]
          Length = 211

 Score =  157 bits (397), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 90/187 (48%), Positives = 120/187 (64%), Gaps = 2/187 (1%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81
           N+  +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L E+I   A+ 
Sbjct: 9   NVEFIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLKDSKKLSEKKRLLLAEEIKQKALA 68

Query: 82  -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            S+  A    IDK NI  AT+ A+  AVENL++ P   L+DG  IP+ LP  A AVIKGD
Sbjct: 69  WSLGRAEPAEIDKLNILHATMLAMQRAVENLKIQPHFVLVDGNRIPQ-LPMSAQAVIKGD 127

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S+   I+AASI+AKV RD+ M    ++YP+Y F  H GYPT  H + + + G    +R +
Sbjct: 128 SLVAEISAASILAKVARDQEMIELDRRYPEYAFAQHKGYPTKLHLERLAQFGVLPEYRRS 187

Query: 201 FRPLRNL 207
           F P++ L
Sbjct: 188 FAPVKKL 194


>gi|148826326|ref|YP_001291079.1| ribonuclease HII [Haemophilus influenzae PittEE]
 gi|166225190|sp|A5UD45|RNH2_HAEIE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|148716486|gb|ABQ98696.1| ribonuclease HII [Haemophilus influenzae PittEE]
          Length = 197

 Score =  157 bits (397), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 118/182 (64%), Gaps = 1/182 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L ++I   A+  ++ 
Sbjct: 11  IAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALADEIKEKALAWALG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI +A+L A+  AV++L++ P   L+DG  IP+DL   A AV+KGDSI  
Sbjct: 71  RAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKGDSIVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR +F P+
Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAELGALPQHRRSFAPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KK 192


>gi|262166323|ref|ZP_06034060.1| ribonuclease HII [Vibrio mimicus VM223]
 gi|262026039|gb|EEY44707.1| ribonuclease HII [Vibrio mimicus VM223]
          Length = 206

 Score =  157 bits (397), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 94/199 (47%), Positives = 119/199 (59%), Gaps = 7/199 (3%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E P FE+ A         +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S KK
Sbjct: 8   ELPPFEIPA-----GYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSEKK 62

Query: 68  REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L+ +I   A+  S+   S Q ID+ NI +AT+ A+  AV  L V P   L+DG  +P
Sbjct: 63  RLALFPEIQEKALAWSVGRCSPQEIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNKVP 122

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP  A AV+KGD     I+AASIIAKV RD  M    K+YP +GF  H GYPTA H  
Sbjct: 123 -TLPMDAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAAHFA 181

Query: 187 VIKEKGPSCIHRLTFRPLR 205
            I++ G    HR +F P++
Sbjct: 182 AIEQHGVIEQHRKSFGPVK 200


>gi|313904190|ref|ZP_07837569.1| Ribonuclease H [Eubacterium cellulosolvens 6]
 gi|313470992|gb|EFR66315.1| Ribonuclease H [Eubacterium cellulosolvens 6]
          Length = 218

 Score =  157 bits (397), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 90/178 (50%), Positives = 117/178 (65%), Gaps = 4/178 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + G+DEVGRG LAGPV  AA+IL  +     INDSKK+S K+REELY+ I   AI +S+ 
Sbjct: 38  ICGVDEVGRGPLAGPVTTAAVILPKDARILYINDSKKLSEKRREELYDIIMEEAIAVSVK 97

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
             S + ID+ NI +ATL+++  +V  L V P    +D  +IP  D+P     +IKGD+ S
Sbjct: 98  LNSWERIDEINILQATLESMRESVNTLDVRPDLVFVDAVTIPGIDIP--QIPIIKGDAKS 155

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            SIAAASIIAKVTRDR+M+   + YP Y F S+ GY T KH + +KE GP  IHR TF
Sbjct: 156 QSIAAASIIAKVTRDRMMKEYDRLYPAYDFASNKGYGTKKHIEALKEFGPCPIHRRTF 213


>gi|170718385|ref|YP_001783609.1| ribonuclease HII [Haemophilus somnus 2336]
 gi|189043602|sp|B0UW63|RNH2_HAES2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|168826514|gb|ACA31885.1| Ribonuclease H [Haemophilus somnus 2336]
          Length = 211

 Score =  157 bits (397), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 90/187 (48%), Positives = 120/187 (64%), Gaps = 2/187 (1%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81
           N+  +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L E+I   A+ 
Sbjct: 9   NVEFIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLKDSKKLSEKKRLLLAEEIKQKALA 68

Query: 82  -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            S+  A    IDK NI  AT+ A+  AVENL++ P   L+DG  IP+ LP  A AVIKGD
Sbjct: 69  WSLGRAEPAEIDKLNILHATMLAMQRAVENLKIQPHFVLVDGNRIPQ-LPMSAQAVIKGD 127

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S+   I+AASI+AKV RD+ M    ++YP+Y F  H GYPT  H + + + G    +R +
Sbjct: 128 SLVAEISAASILAKVARDQEMIELDRRYPEYAFAQHKGYPTKLHLERLAQFGVLPEYRRS 187

Query: 201 FRPLRNL 207
           F P++ L
Sbjct: 188 FAPVKKL 194


>gi|145627984|ref|ZP_01783785.1| lipid-A-disaccharide synthase [Haemophilus influenzae 22.1-21]
 gi|144979759|gb|EDJ89418.1| lipid-A-disaccharide synthase [Haemophilus influenzae 22.1-21]
          Length = 585

 Score =  157 bits (397), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 86/181 (47%), Positives = 118/181 (65%), Gaps = 1/181 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L E+I   A+  ++ 
Sbjct: 399 IAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKALAWALG 458

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI +A+L A+  AV++L++ P   L+DG  IP+DL   A AV+KGDS+  
Sbjct: 459 RAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKGDSLVA 518

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR +F P+
Sbjct: 519 EISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAEFGALPQHRRSFAPV 578

Query: 205 R 205
           +
Sbjct: 579 K 579


>gi|118579525|ref|YP_900775.1| ribonuclease HII [Pelobacter propionicus DSM 2379]
 gi|189043636|sp|A1AMZ7|RNH2_PELPD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|118502235|gb|ABK98717.1| RNase HII [Pelobacter propionicus DSM 2379]
          Length = 219

 Score =  157 bits (397), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 92/196 (46%), Positives = 125/196 (63%), Gaps = 4/196 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           FE +A+  ++    +AGIDE GRGAL GPVV AA+IL       G++DSKK+S + RE+L
Sbjct: 20  FEQQAL--KQGHRVIAGIDEAGRGALCGPVVAAAVILPTGMAIPGVDDSKKLSPRTREQL 77

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +++I + A+ + I   + Q ID+ NI +AT  A+  AV+ L   P   LIDG S   D+P
Sbjct: 78  FDEIMARALSVGIGIGTPQLIDRINILQATRHAMAEAVDILAPRPDMLLIDGIST-IDVP 136

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                + KGDS SL+IAAASIIAKV+RDR++      +P YGF SH GY  A H + I+ 
Sbjct: 137 LPQKTITKGDSRSLTIAAASIIAKVSRDRMLTELDLLHPGYGFASHKGYGCASHMEAIRR 196

Query: 191 KGPSCIHRLTFRPLRN 206
            GPS +HRLTFR +R 
Sbjct: 197 LGPSPVHRLTFRGVRE 212


>gi|254286446|ref|ZP_04961403.1| ribonuclease HII [Vibrio cholerae AM-19226]
 gi|150423395|gb|EDN15339.1| ribonuclease HII [Vibrio cholerae AM-19226]
          Length = 206

 Score =  157 bits (397), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 92/200 (46%), Positives = 121/200 (60%), Gaps = 2/200 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           ++P  EL           +AG+DEVGRG L G VV AA+ILDP+    G+NDSKK+S KK
Sbjct: 3   KKPSIELHPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPHRPIVGLNDSKKLSEKK 62

Query: 68  REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L+ +I   A+  S+   S Q ID+ NI +AT+ A+  AV  L++ P   LIDG  IP
Sbjct: 63  RLALFPEIQEKALAWSVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNKIP 122

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           + LP  A AV+KGD     I+AASIIAKV RD+ M    K+YP +GF  H GYPTA H  
Sbjct: 123 K-LPMAAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAHFA 181

Query: 187 VIKEKGPSCIHRLTFRPLRN 206
            I++ G    HR +F P++ 
Sbjct: 182 AIEQHGVIEQHRKSFGPVKR 201


>gi|227114701|ref|ZP_03828357.1| ribonuclease HII [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 198

 Score =  157 bits (397), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 114/182 (62%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++I   A+  S+ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPTRPIVGLADSKKLSEKRRLSLYDEIKEKALAWSLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L V+P   LIDG   P  LP  A AV+KGDS   
Sbjct: 73  RAEPEEIDQLNILHATMLAMQRAVAGLAVVPDFVLIDGNRCPA-LPMPAQAVVKGDSRVA 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M    +++P YGF  H GYPTA H + +   G +  HR +F P+
Sbjct: 132 EISAASIMAKVTRDREMVELDQRFPAYGFAQHKGYPTAFHLEKLAALGATEFHRRSFAPV 191

Query: 205 RN 206
           R 
Sbjct: 192 RR 193


>gi|309973468|gb|ADO96669.1| Ribonuclease HII [Haemophilus influenzae R2846]
          Length = 197

 Score =  157 bits (397), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 118/182 (64%), Gaps = 1/182 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L ++I   A+  ++ 
Sbjct: 11  IAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALADEIKEKALAWALG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI +A+L A+  AV++L++ P   L+DG  IP+DL   A AV+KGDSI  
Sbjct: 71  RAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKGDSIVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR +F P+
Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAEFGTLPQHRRSFAPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KK 192


>gi|157803394|ref|YP_001491943.1| ribonuclease HII [Rickettsia canadensis str. McKiel]
 gi|166226648|sp|A8EXS5|RNH2_RICCK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157784657|gb|ABV73158.1| ribonuclease HII [Rickettsia canadensis str. McKiel]
          Length = 196

 Score =  157 bits (397), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 92/193 (47%), Positives = 122/193 (63%), Gaps = 4/193 (2%)

Query: 12  FELEAMVREKNM--WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
            E++ +  EK    + VAGIDE GRG LAGPVV +A+++D  NI  GI DSKK+S +KRE
Sbjct: 1   MEIDLLQYEKKYQEYIVAGIDEAGRGPLAGPVVASAVVIDNTNIITGIKDSKKLSKRKRE 60

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            LYE+ITS+ I S +  SH  ID+ NI +AT  A   A  NL + P   L+DG     D 
Sbjct: 61  LLYEQITSNYIWSTAIISHTEIDEINILEATKKACSIAAANLTIKPEIVLVDGNMQFND- 119

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             +  ++IKGD++SLSIAAASI+AK+TRDRLM     ++P Y +  + GY T +H Q I 
Sbjct: 120 -KRFVSIIKGDNLSLSIAAASIVAKITRDRLMLDLSTEFPQYLWYKNSGYGTKEHIQAIN 178

Query: 190 EKGPSCIHRLTFR 202
             G S  HR +FR
Sbjct: 179 THGLSPYHRKSFR 191


>gi|317046996|ref|YP_004114644.1| ribonuclease H [Pantoea sp. At-9b]
 gi|316948613|gb|ADU68088.1| Ribonuclease H [Pantoea sp. At-9b]
          Length = 208

 Score =  157 bits (397), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++I   A+  S+ 
Sbjct: 12  IAGVDEVGRGPLVGAVVTAAVILDPAQPIIGLADSKKLSEKRRLALYDEIKEKALAWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L ++P   LIDG   P  LP  + AV+KGDS+  
Sbjct: 72  RAEPEEIDQINILHATMLAMQRAVAGLPLVPDFVLIDGNRCPA-LPMPSQAVVKGDSLVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M      +P YGF  H GYPTA H + + + G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDREMAELDALFPQYGFAQHKGYPTALHMERLTQHGATPHHRRSFAPV 190

Query: 205 RN 206
           RN
Sbjct: 191 RN 192


>gi|16124634|ref|NP_419198.1| ribonuclease HII [Caulobacter crescentus CB15]
 gi|13421536|gb|AAK22366.1| ribonuclease HII [Caulobacter crescentus CB15]
          Length = 205

 Score =  157 bits (397), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 91/182 (50%), Positives = 112/182 (61%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
           PV G+DE GRG  AGPV   A+ILDP+ IP G+NDSKK+S K R  L E+I   AI   +
Sbjct: 11  PVCGVDEAGRGPWAGPVSAGAVILDPDRIPKGLNDSKKLSAKARAALEEEIKDVAISWCV 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             AS + I + NI  A   A+  AVE L V P  AL+DG +    LPC    VIKGDS+S
Sbjct: 71  GLASIEEIAQLNILHAAGLAMRRAVEGLAVTPAFALVDG-NYAFKLPCPVKTVIKGDSLS 129

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SIAAASI+AK  RDR+M  A   YP YGF  H GY    H + ++  GPS IHRL + P
Sbjct: 130 CSIAAASILAKEARDRIMIEADALYPGYGFAGHKGYHAKVHVEGLRRLGPSPIHRLGWAP 189

Query: 204 LR 205
           ++
Sbjct: 190 VK 191


>gi|218710304|ref|YP_002417925.1| ribonuclease HII [Vibrio splendidus LGP32]
 gi|254808007|sp|B7VIQ4|RNH2_VIBSL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|218323323|emb|CAV19500.1| Ribonuclease HII [Vibrio splendidus LGP32]
          Length = 206

 Score =  157 bits (397), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 123/201 (61%), Gaps = 12/201 (5%)

Query: 18  VREKNMWP----------VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           V+EK  +P           AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KK
Sbjct: 3   VKEKKEFPPFEYPQGYQLFAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKK 62

Query: 68  REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L  +I   A+  S+   S Q ID+ NI +AT+ A+  A+  L V P  ALIDG  +P
Sbjct: 63  RLALLPEIKEKALAWSVGRCSPQEIDELNILQATMVAMQRAIAGLSVQPDMALIDGNRVP 122

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           E LP    A++KGD     I+AASIIAKV RD+ M    K +P++GF  H GYPT  H +
Sbjct: 123 E-LPMAGLAIVKGDLRVAEISAASIIAKVVRDQEMEELDKLHPEFGFAKHKGYPTKAHFE 181

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I++ G +  +R +F+P++ +
Sbjct: 182 AIEKHGVTEHYRKSFKPVKRI 202


>gi|260902377|ref|ZP_05910772.1| ribonuclease HII [Vibrio parahaemolyticus AQ4037]
 gi|308110185|gb|EFO47725.1| ribonuclease HII [Vibrio parahaemolyticus AQ4037]
 gi|328474385|gb|EGF45190.1| ribonuclease HII [Vibrio parahaemolyticus 10329]
          Length = 211

 Score =  157 bits (397), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 116/182 (63%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KKR  L  +I   A+  ++ 
Sbjct: 26  IAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEKALAWAVG 85

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S + ID+ NI +AT+ A+  A+  L+V P   LIDG   PE LP  + AV+KGD    
Sbjct: 86  RCSPEEIDELNILQATMVAMQRAIAGLKVQPDLVLIDGNRCPE-LPMDSQAVVKGDLRVA 144

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKV RD+ M    K+YP +GF  H GYPT  H + I++ G    HR +F+P+
Sbjct: 145 EISAASIIAKVVRDQEMEELDKQYPQFGFAKHKGYPTKAHFEAIEQHGVISEHRKSFKPV 204

Query: 205 RN 206
           + 
Sbjct: 205 KK 206


>gi|308185754|ref|YP_003929885.1| Ribonuclease HII [Pantoea vagans C9-1]
 gi|308056264|gb|ADO08436.1| Ribonuclease HII [Pantoea vagans C9-1]
          Length = 208

 Score =  157 bits (397), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP N   G+ DSKK+S K+R  LY++I   A+  S+ 
Sbjct: 12  IAGVDEVGRGPLVGAVVTAAVILDPANPITGLADSKKLSEKRRLSLYDEIKEKALAWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L + P   LIDG   P  LP  + AV+KGDS+  
Sbjct: 72  RAEPEEIDQLNILHATMLAMQRAVAGLSIQPDYVLIDGNRCPA-LPMPSQAVVKGDSLVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKV+RDR M      +P YGF  H GYPTA H + + + G +  HR +F P+
Sbjct: 131 EISAASIIAKVSRDREMAELDLLFPQYGFAQHKGYPTALHMEKLTQYGATPHHRRSFAPV 190

Query: 205 RN 206
           RN
Sbjct: 191 RN 192


>gi|91223487|ref|ZP_01258752.1| ribonuclease HII [Vibrio alginolyticus 12G01]
 gi|269966265|ref|ZP_06180354.1| ribonuclease HII [Vibrio alginolyticus 40B]
 gi|91191573|gb|EAS77837.1| ribonuclease HII [Vibrio alginolyticus 12G01]
 gi|269829180|gb|EEZ83425.1| ribonuclease HII [Vibrio alginolyticus 40B]
          Length = 211

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L G VV AA+ILDPNN   G+NDSKK++ KKR  L  +I   A+  ++ 
Sbjct: 26  VAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLTEKKRMALLPEIKEKALAWAVG 85

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S + ID+ NI +AT+ A+  AV  LQV P   LIDG   PE LP  A AV+KGD    
Sbjct: 86  RCSPEEIDQLNILQATMVAMQRAVAGLQVQPDLVLIDGNRCPE-LPMDAQAVVKGDLRVA 144

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKV RD+ M    K +P +GF  H GYPT  H + I++ G    HR +F+P+
Sbjct: 145 EISAASIIAKVVRDQEMEELDKLHPQFGFAKHKGYPTKAHFEAIEQHGVISEHRKSFKPV 204

Query: 205 RN 206
           + 
Sbjct: 205 KK 206


>gi|315613173|ref|ZP_07888083.1| ribonuclease HII [Streptococcus sanguinis ATCC 49296]
 gi|315314735|gb|EFU62777.1| ribonuclease HII [Streptococcus sanguinis ATCC 49296]
          Length = 259

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/203 (45%), Positives = 125/203 (61%), Gaps = 9/203 (4%)

Query: 12  FELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
             LE M+  EK ++      +AG+DEVGRG LAGPVV AA+IL  N    G+NDSKKI  
Sbjct: 52  LRLETMLSYEKELYKQGLTLIAGVDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPK 111

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KK  E+Y  +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID   
Sbjct: 112 KKHLEIYHAVQDQALAIGIGIMDNQVIDQVNIYEATKLAMKEAISQLNPQPDHLLIDAMK 171

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +  DL     A+IKGD+ SLSIAAASI+AKVTRD LM+    +YP Y F ++ GY TAKH
Sbjct: 172 L--DLSISQTAIIKGDANSLSIAAASIVAKVTRDELMKEYDNQYPGYDFTANAGYGTAKH 229

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
            + +++ G + IHR +F P++ L
Sbjct: 230 LEELEKLGVTPIHRTSFEPVKTL 252


>gi|321315372|ref|YP_004207659.1| ribonuclease HII [Bacillus subtilis BSn5]
 gi|320021646|gb|ADV96632.1| ribonuclease HII [Bacillus subtilis BSn5]
          Length = 255

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/194 (44%), Positives = 123/194 (63%), Gaps = 3/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E + R K    +AG+DEVGRG LAGPVV +A+IL       G+ DSKK+S KKREE YE 
Sbjct: 63  ERLARNKGFRLMAGVDEVGRGPLAGPVVASAVILPEECEILGLTDSKKLSEKKREEYYEL 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   A+ + I       ID+ NI++A+  A+  A+++L   P   L+D  ++P D   QA
Sbjct: 123 IMKEALAVGIGIVEATVIDEINIYEASKMAMVKAIQDLSDTPDYLLVDAMTLPLD-TAQA 181

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++IKGD+ S+SIAAA+ IAKVTRDR+M    + YP YGF+ + GY T +H + +   GP
Sbjct: 182 -SIIKGDAKSVSIAAAACIAKVTRDRMMSAYAETYPMYGFEKNKGYGTKEHLEALAAYGP 240

Query: 194 SCIHRLTFRPLRNL 207
           + +HR TF P+++ 
Sbjct: 241 TELHRKTFAPVQSF 254


>gi|315652839|ref|ZP_07905813.1| ribonuclease HII [Eubacterium saburreum DSM 3986]
 gi|315485041|gb|EFU75449.1| ribonuclease HII [Eubacterium saburreum DSM 3986]
          Length = 214

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/195 (47%), Positives = 128/195 (65%), Gaps = 10/195 (5%)

Query: 14  LEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKK 67
           LE M   +N +     +AGIDE GRG LAGPVV AA+IL P +I  PF +NDSKK++ K+
Sbjct: 16  LEGMKEFENKYSDFEFIAGIDEAGRGPLAGPVVAAAVIL-PKDIFLPF-LNDSKKVTEKR 73

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R+ L+++I   A+   I  AS+  ID+ NI +AT +A+  A++ L+  P   L+D   IP
Sbjct: 74  RDVLFDRIKQEALAYGIGIASNVLIDEINILQATYEAMREAIKKLKKTPDILLVDAVHIP 133

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            D+  +   ++KGD+ S++IAAASI+AKVTRDRLM    K YP+YGF  + GY TAKH +
Sbjct: 134 -DITIRQLGIVKGDARSINIAAASILAKVTRDRLMLEYDKIYPEYGFAYNKGYGTAKHIE 192

Query: 187 VIKEKGPSCIHRLTF 201
            +KE G   IHR TF
Sbjct: 193 ALKEYGACDIHRRTF 207


>gi|332307491|ref|YP_004435342.1| Ribonuclease H [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174820|gb|AEE24074.1| Ribonuclease H [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 197

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/181 (47%), Positives = 118/181 (65%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+ILDP+    G+ DSKKIS KKR  L++ I  +A+ +S+ 
Sbjct: 5   IAGVDEVGRGPLVGDVVTAAVILDPSKPIAGLADSKKISEKKRLALFDLIMQNALSVSVG 64

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID+ NI  AT+ A+  AV+ L   P    +DG   P+     + AV+KGDS+  
Sbjct: 65  RASPEEIDELNILHATMLAMTRAVQGLATQPTFVRVDGNRCPK-WNYASEAVVKGDSLYA 123

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKVTRD  M   H+KYP+YGF  H GYPT  H + + E GP   +R++F+P+
Sbjct: 124 EISAASIIAKVTRDAEMTALHEKYPEYGFGQHKGYPTKAHLEKLAEFGPLPEYRMSFKPV 183

Query: 205 R 205
           +
Sbjct: 184 Q 184


>gi|297617100|ref|YP_003702259.1| ribonuclease H [Syntrophothermus lipocalidus DSM 12680]
 gi|297144937|gb|ADI01694.1| Ribonuclease H [Syntrophothermus lipocalidus DSM 12680]
          Length = 222

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/196 (43%), Positives = 125/196 (63%), Gaps = 2/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E  +  K +  VAG DEVGRG +AGPVV AA+IL P+    G+NDSK++  KKRE L 
Sbjct: 15  EYEYGLYAKGIRLVAGTDEVGRGPIAGPVVAAAVILPPDFEVPGVNDSKQVPPKKREWLS 74

Query: 73  EKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           +KI  +A+  ++      Y+D+ NI  AT +A+  A+  L + P   ++DG  IPE L  
Sbjct: 75  DKIKENALTWAVGILFPPYLDRINILNATWEAMRLALGGLAIPPEHVIVDGWPIPE-LGV 133

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               ++KGDS+S+S+A ASI+AKV RDR+M    + YP YGF  H GY T +H + ++ K
Sbjct: 134 TQTPLVKGDSLSISVACASILAKVERDRIMTALDEVYPGYGFARHKGYATREHLRALEVK 193

Query: 192 GPSCIHRLTFRPLRNL 207
           GP  IHR++F P++++
Sbjct: 194 GPCPIHRISFEPIKSM 209


>gi|148981147|ref|ZP_01816309.1| ribonuclease HII [Vibrionales bacterium SWAT-3]
 gi|145960974|gb|EDK26299.1| ribonuclease HII [Vibrionales bacterium SWAT-3]
          Length = 206

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 117/182 (64%), Gaps = 2/182 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85
           AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KKR  L  +I   A+  S+  
Sbjct: 22  AGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEKALAWSVGR 81

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S Q ID+ NI +AT+ A+  A+  L V P  ALIDG  +PE LP    AV+KGD     
Sbjct: 82  CSPQEIDELNILQATMVAMQRAIAGLSVQPDMALIDGNRVPE-LPMAGIAVVKGDLRVAE 140

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASIIAKV RD+ M    K +P++GF  H GYPT  H + I++ G +  +R +F+P++
Sbjct: 141 ISAASIIAKVVRDQEMEELDKLHPEFGFAKHKGYPTKAHFEAIEKHGVTEHYRKSFKPVK 200

Query: 206 NL 207
            +
Sbjct: 201 RI 202


>gi|145632423|ref|ZP_01788158.1| ribonuclease HII [Haemophilus influenzae 3655]
 gi|144987330|gb|EDJ93860.1| ribonuclease HII [Haemophilus influenzae 3655]
          Length = 197

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 85/182 (46%), Positives = 118/182 (64%), Gaps = 1/182 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L ++I   A+  ++ 
Sbjct: 11  IAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALADEIKEKALAWALG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI +A+L A+  AV++L++ P   L+DG  IP+DL   A AV+KGDS+  
Sbjct: 71  RAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKGDSLVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR +F P+
Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRRSFAPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KK 192


>gi|157151005|ref|YP_001450488.1| ribonuclease HII [Streptococcus gordonii str. Challis substr. CH1]
 gi|189043666|sp|A8AXH8|RNH2_STRGC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157075799|gb|ABV10482.1| Ribonuclease HII (RNase HII) [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 254

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/203 (44%), Positives = 128/203 (63%), Gaps = 9/203 (4%)

Query: 12  FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
             L+ M+R EK ++      +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  
Sbjct: 52  LRLDQMIRYEKELYQSGYQAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPK 111

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KK +E+Y+ +   A+ + I       IDK NI++AT  A+  A+  L + P   LID   
Sbjct: 112 KKHQEIYQAVMDKALAVGIGLMDSDIIDKVNIYEATKLAMKEALSKLPLKPDYLLIDAMK 171

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +  ++P ++  +IKGD+ SLSIAAASI+AKVTRDRLM    K++P Y F  + GY T +H
Sbjct: 172 LDVEIPQES--IIKGDANSLSIAAASIVAKVTRDRLMADYDKEFPGYAFAQNAGYGTKRH 229

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
            + ++  G S IHR TF P++++
Sbjct: 230 LEGLEHYGVSPIHRKTFEPVKSM 252


>gi|304396658|ref|ZP_07378539.1| Ribonuclease H [Pantoea sp. aB]
 gi|304356167|gb|EFM20533.1| Ribonuclease H [Pantoea sp. aB]
          Length = 208

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP N   G+ DSKK+S K+R  LY++I   A+  S+ 
Sbjct: 12  IAGVDEVGRGPLVGAVVTAAVILDPANPITGLADSKKLSEKRRLALYDEIKEKALAWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L + P   LIDG   P  LP  + AV+KGDS+  
Sbjct: 72  RAEPEEIDQLNILHATMLAMQRAVAGLSIQPDYVLIDGNRCPA-LPMPSQAVVKGDSLVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKV+RDR M      +P YGF  H GYPTA H + + + G +  HR +F P+
Sbjct: 131 EISAASIIAKVSRDREMAELDLLFPQYGFAQHKGYPTALHMEKLTQYGATPHHRRSFAPV 190

Query: 205 RN 206
           RN
Sbjct: 191 RN 192


>gi|320107359|ref|YP_004182949.1| Ribonuclease H [Terriglobus saanensis SP1PR4]
 gi|319925880|gb|ADV82955.1| Ribonuclease H [Terriglobus saanensis SP1PR4]
          Length = 248

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/209 (43%), Positives = 134/209 (64%), Gaps = 15/209 (7%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----G 56
           + C+  PE+    L  +V       +AG+DEVGRGAL GPVV AA+IL P  + +    G
Sbjct: 21  LVCSDAPEQALRHLGYLV-------IAGVDEVGRGALCGPVVAAAVIL-PEEMGWLATKG 72

Query: 57  INDSKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIP 115
           + DSK+++ ++REEL  +I S A+  SI++   + ID+ NI++A+  A+  AV+ L V P
Sbjct: 73  LRDSKQLTREQREELDAEIRSVALAASIAAVDAETIDRVNIYQASRMAMQMAVDALTVRP 132

Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
              LID   I +  PC    +I GDS+SLSIAAAS++AKV RD +MR   +++P YG +S
Sbjct: 133 DHLLIDAMRISD--PCAQTRLIYGDSLSLSIAAASVVAKVYRDAMMRKFAEEHPQYGMES 190

Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           H GY T +H++ +KE GP+ +HR +F P+
Sbjct: 191 HKGYGTPEHRRALKEHGPTPLHRRSFAPV 219


>gi|90022228|ref|YP_528055.1| ribonuclease HII [Saccharophagus degradans 2-40]
 gi|123090288|sp|Q21HI6|RNH2_SACD2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|89951828|gb|ABD81843.1| Ribonuclease H [Saccharophagus degradans 2-40]
          Length = 199

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/181 (48%), Positives = 117/181 (64%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG LAG VV AA+IL  ++   G+ DSKKI+ KKR+ L++ I   A+   I+
Sbjct: 11  VAGVDEVGRGPLAGDVVAAAVILGEDHGIEGLADSKKITEKKRDALFDVIQERAVSFCIA 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID+ NI  A+L A+  AVE L + P+   +DG  +P+     A AV+KGDS+  
Sbjct: 71  RASVEEIDELNILHASLLAMKRAVEGLNIQPQYIYVDGNKLPK-WTYSAEAVVKGDSLVE 129

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M    +KYP YG   H GYPT  H   +K  GP+ IHR +F P+
Sbjct: 130 EISAASILAKVTRDREMVALDEKYPGYGLAGHKGYPTKVHMDALKRLGPTIIHRKSFAPV 189

Query: 205 R 205
           R
Sbjct: 190 R 190


>gi|229829016|ref|ZP_04455085.1| hypothetical protein GCWU000342_01101 [Shuttleworthia satelles DSM
           14600]
 gi|229792179|gb|EEP28293.1| hypothetical protein GCWU000342_01101 [Shuttleworthia satelles DSM
           14600]
          Length = 260

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 119/192 (61%), Gaps = 6/192 (3%)

Query: 15  EAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           E MV E+  W     VAG+DEVGRG LAGP+V AA+IL   +   GINDSKK+S KKREE
Sbjct: 60  ELMVFEREAWQSCQYVAGMDEVGRGPLAGPLVTAAVILPRGHRILGINDSKKVSAKKREE 119

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY +I   A+ + I   S   ID+ N+ +AT +A+  AV  L   P   L D  ++P  L
Sbjct: 120 LYRQIMEEALAVGIGMNSPGRIDQINVLQATYEAMREAVSQLDPAPELVLNDAVTVP-GL 178

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             +   +I GD+ S+SI AASI+AKVTRD +M    K YP YGF  + GY TA H + ++
Sbjct: 179 LVRQIPIIHGDARSISIGAASIVAKVTRDHMMEDYDKTYPGYGFAKNKGYGTADHIRALR 238

Query: 190 EKGPSCIHRLTF 201
           + GP+ IHR +F
Sbjct: 239 KMGPTPIHRRSF 250


>gi|238897797|ref|YP_002923476.1| RNAse HII [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|259494067|sp|C4K435|RNH2_HAMD5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|229465554|gb|ACQ67328.1| RNAse HII [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 200

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/181 (50%), Positives = 115/181 (63%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG LAGPVV AA+ILDP N   G+ DSK +S KKR  LYE+IT  A+  S+ 
Sbjct: 13  IAGVDEVGRGPLAGPVVTAAVILDPKNPIIGLADSKTLSKKKRMALYEEITHKALAWSLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  ATL A+  AV  L +     LIDG   P  L   + +++KGDS   
Sbjct: 73  RAESKEIDEINIFHATLLAMQRAVNALGIKTDHVLIDGHICP-ILSIPSSSIVKGDSKVP 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M    K +P YGF  H GYPTA H + +   GP+  HR +FRP+
Sbjct: 132 EISAASILAKVTRDREMEALDKVFPGYGFAQHKGYPTAFHLEKLALLGPTEQHRRSFRPV 191

Query: 205 R 205
           R
Sbjct: 192 R 192


>gi|332366882|gb|EGJ44623.1| ribonuclease HII [Streptococcus sanguinis SK1059]
          Length = 254

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/204 (44%), Positives = 129/204 (63%), Gaps = 9/204 (4%)

Query: 11  HFELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
              LE M+R EK ++      +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI 
Sbjct: 51  ELRLEQMLRYEKELYKAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIP 110

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            KK +E+Y+ +   A+ + I    ++ ID+ NI++AT  A+  A+  L + P   LID  
Sbjct: 111 KKKHDEIYQAVLDKALAVGIGLIDNEIIDRVNIYEATKLAMKEALSKLCLKPDYLLIDAM 170

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +  ++P ++  +IKGD+ SLSIAAASI+AKVTRD+LM    K+YP Y F  + GY T  
Sbjct: 171 KLDVEIPQES--IIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKS 228

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H Q ++  G + IHR TF P++++
Sbjct: 229 HLQGLERHGVTPIHRKTFEPVKSM 252


>gi|315498150|ref|YP_004086954.1| ribonuclease h [Asticcacaulis excentricus CB 48]
 gi|315416162|gb|ADU12803.1| Ribonuclease H [Asticcacaulis excentricus CB 48]
          Length = 207

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 94/186 (50%), Positives = 116/186 (62%), Gaps = 8/186 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA----II 81
           V G+DE GRG  AGP+ VAA+ILDP  IP GI DSKK+S K+R  L   I ++A    +I
Sbjct: 14  VCGVDEAGRGPCAGPLCVAAVILDPARIPPGIADSKKLSEKQRFALEPDIKAAALAWSVI 73

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
            IS+A    ID HNI +AT+  + HAVE L   P  ALIDG   P  L   A AV+KGD 
Sbjct: 74  EISAAD---IDCHNILRATMMGMTHAVEALSPQPIHALIDGNRCPP-LAIPATAVVKGDD 129

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            SLSIAAASI+AK  RDR+M      YP YGF SH GY    H   I+  GPS IHR+++
Sbjct: 130 KSLSIAAASILAKTARDRIMIEMDALYPIYGFKSHKGYQAEAHIAAIRLHGPSPIHRMSW 189

Query: 202 RPLRNL 207
             +R++
Sbjct: 190 ATVRSV 195


>gi|296876487|ref|ZP_06900538.1| ribonuclease H [Streptococcus parasanguinis ATCC 15912]
 gi|296432480|gb|EFH18276.1| ribonuclease H [Streptococcus parasanguinis ATCC 15912]
          Length = 255

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 92/198 (46%), Positives = 127/198 (64%), Gaps = 7/198 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREE 70
           +E E   R   M  +AG+DEVGRG LAGPVV AA+IL     IP G+NDSKKI   K +E
Sbjct: 60  YEKECYAR--GMELIAGVDEVGRGPLAGPVVAAAVILPKACKIP-GLNDSKKIPKSKHKE 116

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           +YE +  +A+ I I    +Q ID+ NI++AT  A+  A+  L+  P+  LID   +  DL
Sbjct: 117 IYEAVLQNAVAIGIGIKDNQVIDQVNIYEATKLAMMEAIGQLEPQPQHLLIDAMKL--DL 174

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P    ++IKGD+ SLSIAAASI+AKVTRD++M    K+YP Y F  + GY TAKH   + 
Sbjct: 175 PISQISIIKGDANSLSIAAASIVAKVTRDQMMEEFDKEYPGYDFAQNAGYGTAKHLAGLD 234

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + G + IHR +F P++++
Sbjct: 235 KLGVTPIHRRSFEPVKSM 252


>gi|238853072|ref|ZP_04643464.1| ribonuclease HII [Lactobacillus gasseri 202-4]
 gi|238834320|gb|EEQ26565.1| ribonuclease HII [Lactobacillus gasseri 202-4]
          Length = 250

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/194 (45%), Positives = 128/194 (65%), Gaps = 4/194 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F  E    +K+   VAG+DEVGRG LAGPVV AA+IL  N     +NDSKK+S KKR+EL
Sbjct: 55  FSYEKKFGQKSQL-VAGVDEVGRGPLAGPVVTAAVILPHNFDLIDVNDSKKLSPKKRKEL 113

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           + KI + A+ +S+  A++  ID+ NI++A   A+ HAV+ L+V P + L+D  ++P ++P
Sbjct: 114 FPKILAKAVSVSVGLANNDVIDRINIYEADRLAMAHAVQGLKVKPDALLVDAMNVPLNIP 173

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +I GD+ S SIAAASI+AKV RD LM    + YP+Y F  + GY T +H + +K+
Sbjct: 174 --QVKLIHGDAKSNSIAAASIVAKVFRDNLMDAYGEVYPEYDFKHNAGYGTREHMEALKK 231

Query: 191 KGPSCIHRLTFRPL 204
            GP+ IHR +F P+
Sbjct: 232 YGPTPIHRRSFAPV 245


>gi|260775272|ref|ZP_05884169.1| ribonuclease HII [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608453|gb|EEX34618.1| ribonuclease HII [Vibrio coralliilyticus ATCC BAA-450]
          Length = 205

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/200 (45%), Positives = 122/200 (61%), Gaps = 12/200 (6%)

Query: 17  MVREKNMWP----------VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           M +EK   P          +AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK++ K
Sbjct: 1   MTKEKKELPPFEYPQGYRLIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLTEK 60

Query: 67  KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           KR  L  +I   A+  S+   S + ID+ NI +AT+ A+  A+E L+V P  ALIDG  +
Sbjct: 61  KRLALLPEIKEKALAWSVGRCSPEEIDQLNILQATMVAMQRAIEGLEVAPDFALIDGNRV 120

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P+ L   A AV+KGD     I+AASIIAKV RD+ M    K +P +GF  H GYPT  H 
Sbjct: 121 PQ-LNMDAQAVVKGDMRVAEISAASIIAKVVRDQEMEELDKLHPQFGFAKHKGYPTKAHF 179

Query: 186 QVIKEKGPSCIHRLTFRPLR 205
           + I++ G    HR +F+P++
Sbjct: 180 EAIEQHGVIDQHRKSFKPVK 199


>gi|220934349|ref|YP_002513248.1| Ribonuclease H [Thioalkalivibrio sp. HL-EbGR7]
 gi|254808004|sp|B8GQ66|RNH2_THISH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|219995659|gb|ACL72261.1| Ribonuclease H [Thioalkalivibrio sp. HL-EbGR7]
          Length = 202

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/182 (49%), Positives = 118/182 (64%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG LAGPVV AA+ILDP     G+ DSKK+S  +RE L  +I   ++  ++ 
Sbjct: 12  VAGVDEVGRGPLAGPVVAAAVILDPARPIDGLKDSKKLSPARREALDVQIRERSLAFALG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             +   ID+ NI +A+L A+  AVE L   P  AL+DG   P+ L   A AVIKGDS   
Sbjct: 72  LCTPAEIDRINILQASLLAMQRAVEALSHRPEMALVDGNRCPK-LTMTAHAVIKGDSRVP 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASIIAKV RDRLM    +++P YG  SH+GYPT  H + ++  GPS  HRL+F P+
Sbjct: 131 AISAASIIAKVHRDRLMLALDEQHPGYGLGSHMGYPTPVHLEALERLGPSPCHRLSFAPV 190

Query: 205 RN 206
           R 
Sbjct: 191 RR 192


>gi|319947076|ref|ZP_08021310.1| ribonuclease HII [Streptococcus australis ATCC 700641]
 gi|319747124|gb|EFV99383.1| ribonuclease HII [Streptococcus australis ATCC 700641]
          Length = 256

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/204 (42%), Positives = 129/204 (63%), Gaps = 9/204 (4%)

Query: 12  FELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
             LE M+  EK ++      +AG+DEVGRG LAGPVV AA+IL  N    G+NDSKKI  
Sbjct: 52  LRLEKMLTYEKELYAQGIQLIAGVDEVGRGPLAGPVVAAAVILPENCKILGLNDSKKIPK 111

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
            K + +Y+ +   A+ + I    +Q ID+ NI++AT  A+  A++ L   P+  LID   
Sbjct: 112 SKHQAIYQAVLDQALSVGIGVKDNQVIDQVNIYEATKLAMLEAIQELDQQPQHLLIDAMK 171

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +  D+P    ++IKGD+ SLSIAAASI+AKVTRD++M    ++YP Y F  + GY T KH
Sbjct: 172 L--DVPISQTSIIKGDANSLSIAAASIVAKVTRDQMMAAYDQEYPGYDFGQNAGYGTTKH 229

Query: 185 QQVIKEKGPSCIHRLTFRPLRNLS 208
            + +++ G + IHR +F P+++++
Sbjct: 230 LEGLEKHGVTPIHRRSFEPIKSMT 253


>gi|303271053|ref|XP_003054888.1| ribonuclease HII [Micromonas pusilla CCMP1545]
 gi|226462862|gb|EEH60140.1| ribonuclease HII [Micromonas pusilla CCMP1545]
          Length = 256

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 123/203 (60%), Gaps = 5/203 (2%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           P R H   E M  ++    V G+DE GRG LAGPVV AA +   + +   INDSK+++ +
Sbjct: 46  PSRAH---EQMYWDQGKKIVCGVDEAGRGPLAGPVVAAACVFPEDLVIDAINDSKQMTEE 102

Query: 67  KREELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
            REE+YE++  +  +  S+    H+ ID  NI +AT+ A+  +VE L       L+DG  
Sbjct: 103 DREEVYEQLMENPEVLKSVCVIDHKEIDDINILEATMKAMRKSVEGLPTKADWVLVDGNR 162

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +PE L  +A A++KGD+ S+ IAAAS++AKVTRDR+M    K++P+YGF  H GY    H
Sbjct: 163 VPEPLKGRAEAIVKGDAKSVCIAAASVLAKVTRDRMMVEIAKEHPEYGFAEHKGYGVKSH 222

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
              I E GP   HR+TF P++ +
Sbjct: 223 MAAIHEHGPCPYHRMTFAPMKYM 245


>gi|227879127|ref|ZP_03997011.1| ribonuclease HII [Lactobacillus crispatus JV-V01]
 gi|256843160|ref|ZP_05548648.1| ribonuclease HII [Lactobacillus crispatus 125-2-CHN]
 gi|256850241|ref|ZP_05555670.1| ribonuclease HII [Lactobacillus crispatus MV-1A-US]
 gi|262046367|ref|ZP_06019329.1| ribonuclease HII [Lactobacillus crispatus MV-3A-US]
 gi|293380236|ref|ZP_06626317.1| ribonuclease HII [Lactobacillus crispatus 214-1]
 gi|312977295|ref|ZP_07789043.1| ribonuclease HII [Lactobacillus crispatus CTV-05]
 gi|227861284|gb|EEJ68919.1| ribonuclease HII [Lactobacillus crispatus JV-V01]
 gi|256614580|gb|EEU19781.1| ribonuclease HII [Lactobacillus crispatus 125-2-CHN]
 gi|256712878|gb|EEU27870.1| ribonuclease HII [Lactobacillus crispatus MV-1A-US]
 gi|260573238|gb|EEX29796.1| ribonuclease HII [Lactobacillus crispatus MV-3A-US]
 gi|290923203|gb|EFE00125.1| ribonuclease HII [Lactobacillus crispatus 214-1]
 gi|310895726|gb|EFQ44792.1| ribonuclease HII [Lactobacillus crispatus CTV-05]
          Length = 250

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/193 (46%), Positives = 123/193 (63%), Gaps = 7/193 (3%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           EK  W     VAG+DEVGRG LAGPVV AA+I+D +     +NDSKK+S +KR +LY KI
Sbjct: 58  EKKFWEKGQLVAGVDEVGRGPLAGPVVTAAVIIDQDFDLLDVNDSKKLSPEKRLKLYPKI 117

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
            + A+ + I   S + ID+ NI++A   A+  AV  L V P + L+D  ++P +LP    
Sbjct: 118 LAEAVSVGIGVKSAEVIDQINIYEADRQAMAQAVRALDVKPNALLVDAMNVPVNLP--QV 175

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            +IKGD+ S SIAAASI+AKV RD+LM    + YP Y F  + GY T +H + +K+ GP+
Sbjct: 176 KLIKGDAKSNSIAAASIVAKVFRDQLMDDYDRIYPQYCFHHNAGYGTKEHIEALKKYGPT 235

Query: 195 CIHRLTFRPLRNL 207
            IHR TF P+ + 
Sbjct: 236 PIHRKTFAPVSDF 248


>gi|261211364|ref|ZP_05925652.1| ribonuclease HII [Vibrio sp. RC341]
 gi|260839319|gb|EEX65945.1| ribonuclease HII [Vibrio sp. RC341]
          Length = 206

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/199 (46%), Positives = 121/199 (60%), Gaps = 7/199 (3%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E P FE+ A         +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S KK
Sbjct: 8   ELPPFEIPA-----GYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIEGLNDSKKLSEKK 62

Query: 68  REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L+ +I   A+  ++   S Q ID+ NI +AT+ A+  AV  L V P   L+DG  +P
Sbjct: 63  RLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNKVP 122

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           + LP +A AV+KGD     I+AASIIAKV RD  M    K+YP +GF  H GYPTA H  
Sbjct: 123 Q-LPMEAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAVHFA 181

Query: 187 VIKEKGPSCIHRLTFRPLR 205
            I++ G    HR +F P++
Sbjct: 182 AIEQHGVIEQHRKSFGPVK 200


>gi|229843904|ref|ZP_04464045.1| ribonuclease HII [Haemophilus influenzae 6P18H1]
 gi|229812898|gb|EEP48586.1| ribonuclease HII [Haemophilus influenzae 6P18H1]
          Length = 197

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 85/182 (46%), Positives = 118/182 (64%), Gaps = 1/182 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L ++I   A+  ++ 
Sbjct: 11  IAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALADEIKEKALAWALG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI +A+L A+  AV++L++ P   L+DG  IP+DL   A AV+KGDS+  
Sbjct: 71  RAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKGDSLVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR +F P+
Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAELGALPQHRRSFAPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KK 192


>gi|270264806|ref|ZP_06193070.1| ribonuclease HII [Serratia odorifera 4Rx13]
 gi|270041104|gb|EFA14204.1| ribonuclease HII [Serratia odorifera 4Rx13]
          Length = 197

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 116/182 (63%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++I   A+  S+ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPARPIIGLADSKKLSEKRRLALYDEIVEKALSWSLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP ++ AV+KGDS   
Sbjct: 73  RAEPEEIDRLNILHATMLAMQRAVAGLHIAPDMVLIDGNRCPK-LPMRSQAVVKGDSRVA 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M    +++PDYGF  H GYPTA H + +   G +  HR +F P+
Sbjct: 132 EISAASILAKVTRDREMTELDREFPDYGFAQHKGYPTAFHLERLAVLGATEHHRRSFAPV 191

Query: 205 RN 206
           R 
Sbjct: 192 RR 193


>gi|307067682|ref|YP_003876648.1| ribonuclease HII [Streptococcus pneumoniae AP200]
 gi|306409219|gb|ADM84646.1| Ribonuclease HII [Streptococcus pneumoniae AP200]
          Length = 259

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/204 (44%), Positives = 129/204 (63%), Gaps = 9/204 (4%)

Query: 11  HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           +  LE+M+  EK ++      +AGIDEVG G LAGPVV AA+IL  N    G+NDSKKI 
Sbjct: 51  NLRLESMLSYEKELYKQGLTLIAGIDEVGHGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            KK  E+++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID  
Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +  DLP    ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAK
Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAK 228

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H + + + G + IHR +F P+++L
Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252


>gi|86146875|ref|ZP_01065194.1| ribonuclease HII [Vibrio sp. MED222]
 gi|85835327|gb|EAQ53466.1| ribonuclease HII [Vibrio sp. MED222]
          Length = 206

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 123/201 (61%), Gaps = 12/201 (5%)

Query: 18  VREKNMWP----------VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           V+EK  +P           AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KK
Sbjct: 3   VKEKKEFPPFEYPQGYQLFAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKK 62

Query: 68  REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L  +I   A+  S+   S Q ID+ NI +AT+ A+  A+  L V P  ALIDG  +P
Sbjct: 63  RLALLPEIKEKALAWSVGRCSPQEIDELNILQATMVAMQRAIAGLSVQPDIALIDGNRVP 122

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           E LP    A++KGD     I+AASIIAKV RD+ M    K +P++GF  H GYPT  H +
Sbjct: 123 E-LPMAGLAIVKGDLRVAEISAASIIAKVVRDQEMEELDKLHPEFGFAKHKGYPTKAHFE 181

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I++ G +  +R +F+P++ +
Sbjct: 182 AIEKHGVTEHYRKSFKPVKRI 202


>gi|291546334|emb|CBL19442.1| Ribonuclease HII [Ruminococcus sp. SR1/5]
          Length = 251

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/177 (50%), Positives = 118/177 (66%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG LAGPVV  A+IL  +     +NDSKK++ KKREELY+ I   A+ + I 
Sbjct: 71  LCGIDEVGRGPLAGPVVACAVILPKDCDILWLNDSKKLTAKKREELYDVILEGAVSVGIG 130

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID+ NI +AT +A+  AV  L V P+  L D  +IPE +      +IKGD+ S+
Sbjct: 131 MASPERIDEINILQATYEAMRQAVSRLSVQPQLLLNDAVTIPE-IQIPQVPIIKGDAKSV 189

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SIAAASI+AKVTRDR+M    K  P+YGF S+ GY +A H + +K+ GPS IHR TF
Sbjct: 190 SIAAASIVAKVTRDRMMEEYDKVLPEYGFASNKGYGSAAHIEALKKYGPSPIHRKTF 246


>gi|149025509|ref|ZP_01836442.1| ribonuclease HII [Streptococcus pneumoniae SP23-BS72]
 gi|147929381|gb|EDK80378.1| ribonuclease HII [Streptococcus pneumoniae SP23-BS72]
          Length = 259

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/204 (44%), Positives = 129/204 (63%), Gaps = 9/204 (4%)

Query: 11  HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           +  LE+M+  EK ++      + GIDEVGRG LAGPVV AA+IL  N    G+NDSKKI 
Sbjct: 51  NLRLESMLSYEKELYKQGLTLIVGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            KK  E+++ +   ++ I I    +Q ID+ NI++AT  A+  A+  L   P   LID  
Sbjct: 111 KKKHLEIFQAVQDQSLSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +  DLP    ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAK
Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAK 228

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H + + + G + IHR +F P+++L
Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252


>gi|148998411|ref|ZP_01825853.1| ribonuclease HII [Streptococcus pneumoniae SP11-BS70]
 gi|147755808|gb|EDK62853.1| ribonuclease HII [Streptococcus pneumoniae SP11-BS70]
          Length = 260

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/204 (44%), Positives = 129/204 (63%), Gaps = 9/204 (4%)

Query: 11  HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           +  LE+M+  EK ++      +AGIDEVG G LAGPVV AA+IL  N    G+NDSKKI 
Sbjct: 51  NLRLESMLSYEKELYKQGLTLIAGIDEVGHGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            KK  E+++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID  
Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +  DLP    ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAK
Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAK 228

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H + + + G + IHR +F P+++L
Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252


>gi|320529141|ref|ZP_08030233.1| ribonuclease HII [Selenomonas artemidis F0399]
 gi|320138771|gb|EFW30661.1| ribonuclease HII [Selenomonas artemidis F0399]
          Length = 255

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/186 (48%), Positives = 120/186 (64%), Gaps = 8/186 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI---IS 82
           VAG+DE GRG LAGPV VAA IL        +NDSKK+S K R EL+E+IT  AI   ++
Sbjct: 72  VAGVDEAGRGPLAGPVAVAAAILPQELYLPRLNDSKKLSAKVRAELFEEITEKAIAYHVT 131

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDS 141
           +  A+   ID+ NI +AT   +Y AV  L   P   L+D   +P+  +P Q+  +IKGD+
Sbjct: 132 LIDAAE--IDRINILQATRRGMYEAVAALTPAPEEVLVDAVELPQLRMPVQS--IIKGDA 187

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            S+SIAAASI+AKVTRDRLM     +YP YGF  H GY TA+H   I+ +G + IHR TF
Sbjct: 188 KSVSIAAASILAKVTRDRLMERYDTEYPGYGFAGHKGYGTAEHIAAIRAQGVTPIHRRTF 247

Query: 202 RPLRNL 207
            P+R++
Sbjct: 248 EPIRSM 253


>gi|332360875|gb|EGJ38681.1| ribonuclease HII [Streptococcus sanguinis SK49]
          Length = 254

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/204 (44%), Positives = 129/204 (63%), Gaps = 9/204 (4%)

Query: 11  HFELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
              LE M+R EK ++      +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI 
Sbjct: 51  ELRLEQMLRYEKELYKTGFRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIP 110

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            KK +++Y+ +   A+ + +    ++ ID+ NI++AT  A+  A+  L + P   LID  
Sbjct: 111 KKKHQDIYQAVMDKALAVGVGLIDNEIIDQVNIYEATKLAMKEALSKLCLKPDYLLIDAM 170

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +  D+P ++  +IKGD+ SLSIAAASI+AKVTRD+LM    K+YP Y F  + GY T  
Sbjct: 171 KLDIDIPQES--IIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKS 228

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H Q ++  G + IHR TF P++++
Sbjct: 229 HLQGLERHGVTPIHRKTFEPVKSM 252


>gi|312173373|emb|CBX81627.1| ribonuclease HII [Erwinia amylovora ATCC BAA-2158]
          Length = 207

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+ILDP+    G+ DSKK+S K+R  LY++I   A+  S+ 
Sbjct: 12  IAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLGDSKKLSEKRRLALYDEIKDKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L + P   LIDG   P  L   + AV+KGDS+  
Sbjct: 72  RAEPEEIDRLNILHATMLAMQRAVAGLHLTPDFVLIDGNRCPA-LAMPSRAVVKGDSLVQ 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I AASI+AKVTRDR M    ++YP YGF  H GYPTA H + + + G +  HR +F P+
Sbjct: 131 EIGAASIMAKVTRDREMCELDQQYPQYGFARHKGYPTAVHMEKLAQFGVTPQHRRSFAPV 190

Query: 205 RN 206
           RN
Sbjct: 191 RN 192


>gi|261822585|ref|YP_003260691.1| ribonuclease HII [Pectobacterium wasabiae WPP163]
 gi|261606598|gb|ACX89084.1| Ribonuclease H [Pectobacterium wasabiae WPP163]
          Length = 198

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++I   A+  S+ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPTRPIVGLADSKKLSEKRRLALYDEINEKALAWSLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L ++P   LIDG   P  LP +A AV+KGDS   
Sbjct: 73  RAEPEEIDQLNILHATMLAMQRAVAGLSIVPDFVLIDGNRCPA-LPMRAQAVVKGDSRVA 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M    +++P YGF  H GYPTA H + +   G +  HR +F P+
Sbjct: 132 EISAASIMAKVTRDREMVELDQRFPAYGFAQHKGYPTAFHLEKLAALGATEFHRRSFAPV 191

Query: 205 RN 206
           + 
Sbjct: 192 KR 193


>gi|187735061|ref|YP_001877173.1| Ribonuclease H [Akkermansia muciniphila ATCC BAA-835]
 gi|187425113|gb|ACD04392.1| Ribonuclease H [Akkermansia muciniphila ATCC BAA-835]
          Length = 214

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/209 (43%), Positives = 124/209 (59%), Gaps = 10/209 (4%)

Query: 8   ERPH----FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKK 62
           E+PH    FE+EA  R      VAG+DE GRG LAGPVV  A+IL        G+NDSK+
Sbjct: 3   EKPHPDMSFEMEA--RASGFLCVAGVDEAGRGPLAGPVVAGAVILPVLAEELTGLNDSKQ 60

Query: 63  ISHKKREELYEKI--TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           ++  KRE L+  +     A+ S+  AS + ID+ NI +AT  A+  AVE L +     L+
Sbjct: 61  LTAAKRERLFLALLECEQAVCSVGVASVEEIDRFNILRATHLAMARAVEGLALRADFCLV 120

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG  + + LP    A++KGD  SLSIAAAS++AKVTRDR+M  A   YP YGF  H GY 
Sbjct: 121 DGLPV-KGLPVPHRAIVKGDGRSLSIAAASVLAKVTRDRMMMEADASYPQYGFAKHKGYG 179

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209
           T  H + ++  GP  +HR +F P+  + +
Sbjct: 180 TKAHMEALRRHGPCPLHRRSFAPVSQMEL 208


>gi|50119985|ref|YP_049152.1| ribonuclease HII [Pectobacterium atrosepticum SCRI1043]
 gi|73917607|sp|Q6D8C9|RNH2_ERWCT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|49610511|emb|CAG73956.1| ribonuclease HII [Pectobacterium atrosepticum SCRI1043]
          Length = 198

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/183 (46%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSK++S K+R  LY++I   A+  S+ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPTRPIVGLADSKQLSEKRRLSLYDEIKEKALAWSLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L ++P   LIDG   P  LP  A AV+KGDS   
Sbjct: 73  RAEPEEIDQLNILHATMLAMQRAVAALAIVPDFVLIDGNRCPA-LPMPAQAVVKGDSRVA 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M    +++PDYGF  H GYPTA H + +   G +  HR +F P+
Sbjct: 132 EISAASIMAKVTRDREMVELDQRFPDYGFAQHKGYPTAFHLEKLAALGATEFHRRSFAPV 191

Query: 205 RNL 207
           + +
Sbjct: 192 KRV 194


>gi|306825207|ref|ZP_07458549.1| ribonuclease HII [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432643|gb|EFM35617.1| ribonuclease HII [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 259

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/204 (44%), Positives = 128/204 (62%), Gaps = 9/204 (4%)

Query: 11  HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           +F LE+M+  EK ++      +AG+DEVGRG LAGPVV AA+IL       G+NDSKKI 
Sbjct: 51  NFRLESMLSYEKELYKQGLTLIAGVDEVGRGPLAGPVVAAAVILPKKCKIRGLNDSKKIP 110

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            KK  E+Y+ +   A+ I I    +  ID+ NI++AT  A+  A+  L   P   LID  
Sbjct: 111 KKKHLEIYQAVQDQALAIGIGIKDNHIIDQVNIYEATKLAMKEAISQLSPQPEHLLIDAM 170

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +  +LP    A+IKGD+ SLSIAAASI+AKVTRD +M+    +YP Y F ++ GY TAK
Sbjct: 171 KL--ELPISQTAIIKGDANSLSIAAASIVAKVTRDNIMKDYDNQYPGYDFRANAGYGTAK 228

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H + +++ G + IHR +F P++ L
Sbjct: 229 HLEGLEKLGVTQIHRTSFEPVKTL 252


>gi|262282236|ref|ZP_06060004.1| ribonuclease HII [Streptococcus sp. 2_1_36FAA]
 gi|262261527|gb|EEY80225.1| ribonuclease HII [Streptococcus sp. 2_1_36FAA]
          Length = 254

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/203 (45%), Positives = 127/203 (62%), Gaps = 9/203 (4%)

Query: 12  FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
             LE M+R EK ++      +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  
Sbjct: 52  LRLEQMLRYEKELYQAGYQAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPK 111

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KK  E+Y+ + + A+ + I    +  ID+ NI++AT  A+  A+  L + P   LID   
Sbjct: 112 KKHNEIYQAVMNKALTVGIGLMDNDIIDQVNIYEATKLAMKEALSKLFLKPDYLLIDAMK 171

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +  D+P  +  +IKGD+ SLSIAAASI+AKVTRDRLM    K++P Y F  + GY T  H
Sbjct: 172 LDVDIPQDS--IIKGDANSLSIAAASIVAKVTRDRLMADYDKEFPGYAFAQNAGYGTKSH 229

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
            + ++  G S IHR TF P++++
Sbjct: 230 LEGLEHYGVSPIHRKTFEPVKSM 252


>gi|322376562|ref|ZP_08051055.1| ribonuclease HII [Streptococcus sp. M334]
 gi|321282369|gb|EFX59376.1| ribonuclease HII [Streptococcus sp. M334]
          Length = 259

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 90/204 (44%), Positives = 130/204 (63%), Gaps = 9/204 (4%)

Query: 11  HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           +  LE+M+  EK ++      +AG+DEVGRG LAGPVV AA+IL  N     +NDSKKI 
Sbjct: 51  NLRLESMLSYEKELYKQGLTLIAGVDEVGRGPLAGPVVSAAVILPQNCKIKDLNDSKKIP 110

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            KK  E+++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID  
Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIMDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +  DLP    ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAK
Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKDYDQQFPGYDFTANAGYGTAK 228

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H + +++ G + IHR +F P+++L
Sbjct: 229 HLEGLEKLGVTPIHRTSFEPVKSL 252


>gi|77408047|ref|ZP_00784795.1| ribonuclease HII [Streptococcus agalactiae COH1]
 gi|77173312|gb|EAO76433.1| ribonuclease HII [Streptococcus agalactiae COH1]
          Length = 253

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/210 (44%), Positives = 130/210 (61%), Gaps = 13/210 (6%)

Query: 9   RPHFELEA-----MVREKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN 58
           + H + EA     +V EK ++      +AGIDEVGRG LAGPVV AA+IL PN     +N
Sbjct: 45  QSHLDEEARLEQMLVYEKKLYIEHINLIAGIDEVGRGPLAGPVVAAAVILPPNCKIKHLN 104

Query: 59  DSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117
           DSKKI  KK +E+Y+ I   A+ + I     Q ID  NI++AT  A+  AV +L V+P  
Sbjct: 105 DSKKIPKKKHQEIYQNILDQALAVGIGIQDSQCIDDINIYEATKHAMIDAVSHLSVVPEH 164

Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
            LID   +  DLP     +IKGD+ SLSIAAASI+AKVTRD++M     KYP + F  + 
Sbjct: 165 LLIDAMVL--DLPIPQTKIIKGDANSLSIAAASIVAKVTRDKIMSDYDSKYPGFAFSKNA 222

Query: 178 GYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           GY T +H + +++ G + IHR +F P++++
Sbjct: 223 GYGTKEHLEGLQKYGITPIHRKSFEPIKSM 252


>gi|327460345|gb|EGF06682.1| ribonuclease HII [Streptococcus sanguinis SK1057]
          Length = 254

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/203 (43%), Positives = 129/203 (63%), Gaps = 9/203 (4%)

Query: 12  FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
             LE M+R EK ++      +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  
Sbjct: 52  LRLEQMLRYEKELYQAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPK 111

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KK +++Y+ +   A+ + I     + ID+ NI++AT  A+  A+  L++     LID   
Sbjct: 112 KKHQDIYQAVMDKALAVGIGLMDSEIIDQVNIYEATKLAMKEALSKLRLKSDYLLIDAMK 171

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +  D+P ++  +IKGD+ SLSIAAASI+AKVTRD+LM    K++P Y F  + GY T  H
Sbjct: 172 LDVDIPQES--IIKGDANSLSIAAASIVAKVTRDKLMTDYDKEFPGYDFAQNAGYGTKSH 229

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
            Q +++ G + IHR TF P++++
Sbjct: 230 LQGLEQNGVTPIHRKTFEPVKSM 252


>gi|291484157|dbj|BAI85232.1| ribonuclease HII [Bacillus subtilis subsp. natto BEST195]
          Length = 255

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/194 (43%), Positives = 122/194 (62%), Gaps = 3/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E + R K    +AG+DEVGRG LAGPVV +A+IL       G+ DSKK+S KKREE YE 
Sbjct: 63  ERLARNKGFRLIAGVDEVGRGPLAGPVVASAVILPEECEILGLTDSKKLSEKKREEYYEL 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   A+ + I       ID+ NI++A+  A+  A+++L   P   L+D  ++P D   QA
Sbjct: 123 IMKEALAVGIGIVEATVIDEINIYEASKMAMVKAIQDLSGTPDYLLVDAMTLPLD-TAQA 181

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++IKGD+ S+SIAA + IAKVTRDR+M    + YP YGF+ + GY T +H + +   GP
Sbjct: 182 -SIIKGDAKSVSIAAGACIAKVTRDRMMSAYAETYPMYGFEKNKGYGTKEHLEALAAYGP 240

Query: 194 SCIHRLTFRPLRNL 207
           + +HR TF P+++ 
Sbjct: 241 TELHRKTFAPVQSF 254


>gi|302384139|ref|YP_003819962.1| ribonuclease H [Brevundimonas subvibrioides ATCC 15264]
 gi|302194767|gb|ADL02339.1| Ribonuclease H [Brevundimonas subvibrioides ATCC 15264]
          Length = 213

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/199 (44%), Positives = 118/199 (59%), Gaps = 2/199 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P   LE ++  +    V G+DE GRG  AGPV  AA+IL+ +++P GI+DSK ++  +RE
Sbjct: 13  PTMALETLLASRVGGRVCGVDEAGRGPWAGPVSAAAVILNADDLPVGIDDSKALTAARRE 72

Query: 70  ELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            L  +I + A+   +  AS + ID  NI  AT  A+  A+E L V P +AL+DG +    
Sbjct: 73  ALEIEIKARAVAWGVGFASVEEIDALNILHATGLAMCRAIEALSVSPVAALVDG-NYRFR 131

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LPC    V+ GD +SLSIAAASI+AK  RDRLM      YP YGF  H GY    H Q +
Sbjct: 132 LPCDVETVVGGDGLSLSIAAASILAKTARDRLMIEMDDLYPGYGFAGHKGYNAPVHSQAL 191

Query: 189 KEKGPSCIHRLTFRPLRNL 207
           +  GP  IHR T+ P+R L
Sbjct: 192 QTMGPCPIHRRTWAPIRAL 210


>gi|225858944|ref|YP_002740454.1| ribonuclease HII [Streptococcus pneumoniae 70585]
 gi|254807989|sp|C1C7C8|RNH2_STRP7 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|225721844|gb|ACO17698.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae 70585]
          Length = 259

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/204 (44%), Positives = 129/204 (63%), Gaps = 9/204 (4%)

Query: 11  HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           +  LE+M+  EK ++      +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKKI 
Sbjct: 51  NLRLESMLSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            KK  E+++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID  
Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +  DLP    ++IKGD+ SLSIAAASI+AKVTRD LM+   +++  Y F ++ GY TAK
Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFSGYDFATNAGYGTAK 228

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H + + + G + IHR +F P+++L
Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252


>gi|99082490|ref|YP_614644.1| ribonuclease HII [Ruegeria sp. TM1040]
 gi|122984106|sp|Q1GD84|RNH2_SILST RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|99038770|gb|ABF65382.1| RNase HII [Ruegeria sp. TM1040]
          Length = 229

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/198 (42%), Positives = 125/198 (63%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P   LE   + +    +AG+DEVGRG LAGPV  AA++LD  ++P G+NDSKK++ ++R 
Sbjct: 28  PDLSLEEAAQARGYTRIAGVDEVGRGPLAGPVTAAAVVLDLADLPEGLNDSKKLTPRRRA 87

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L  +I + A  +++ AS + ID HNI +A+  A+  AV  L   P   LIDG  IP  L
Sbjct: 88  ALEPEIMARASYAVAHASVEEIDHHNILRASHLAMERAVAALDPQPDYLLIDGNLIPRAL 147

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              A AV+KGD  SLSIAAASI+AK  RDR+M    +++P YG++ + GYP+ +H+  + 
Sbjct: 148 HIPAEAVVKGDGRSLSIAAASILAKEARDRIMVDLAQQFPGYGWERNAGYPSKQHRDALI 207

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + G +  HR +F+P+  +
Sbjct: 208 KIGVTPHHRRSFKPVHKI 225


>gi|319939095|ref|ZP_08013459.1| ribonuclease HII [Streptococcus anginosus 1_2_62CV]
 gi|319812145|gb|EFW08411.1| ribonuclease HII [Streptococcus anginosus 1_2_62CV]
          Length = 260

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/201 (47%), Positives = 131/201 (65%), Gaps = 9/201 (4%)

Query: 14  LEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           LE M+R EK ++      +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKK+  KK
Sbjct: 54  LEQMLRYEKELYATGCQYIAGIDEVGRGPLAGPVVAAAVILPKNYKIKGLNDSKKVPKKK 113

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
            +E+Y+++   AI + I    +Q ID+ NI++AT  A+  AV NL+V P+  LID   + 
Sbjct: 114 HKEIYQEVLKQAISVGIGIKDNQVIDEVNIYEATKLAMLEAVGNLEVAPQHLLIDAMQL- 172

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            D+     ++IKGD+ SLSIAAASI+AKVTRDR+M      YP Y F  +VGY T  H +
Sbjct: 173 -DVQVPQTSIIKGDANSLSIAAASIVAKVTRDRMMTNYELTYPGYDFAHNVGYGTQHHLE 231

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            +K KG + IHR TF P++++
Sbjct: 232 GLKRKGITPIHRTTFEPIKSM 252


>gi|300361596|ref|ZP_07057773.1| ribonuclease H [Lactobacillus gasseri JV-V03]
 gi|300354215|gb|EFJ70086.1| ribonuclease H [Lactobacillus gasseri JV-V03]
          Length = 250

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/190 (45%), Positives = 125/190 (65%), Gaps = 7/190 (3%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           EK  W     VAG+DEVGRG LAGPVV AA+IL  N     +NDSKK+S KKR+ L+ +I
Sbjct: 58  EKEFWQKNQLVAGVDEVGRGPLAGPVVTAAVILPHNFDLIDVNDSKKLSPKKRKALFPQI 117

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
            + A+ +S+  A++  ID+ NI++A   A+ HAV+ L+V P + L+D  ++P ++P    
Sbjct: 118 LAKAVSVSVGLANNDVIDRINIYEADRLAMAHAVQGLKVKPAALLVDAMNVPLNIP--QI 175

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            +I GD+ S SIAAASI+AKV RD LM    + YP+Y F  + GY T +H + +K+ GP+
Sbjct: 176 KLIHGDAKSNSIAAASIVAKVFRDNLMDAYGEVYPEYDFKHNAGYGTREHMEALKKYGPT 235

Query: 195 CIHRLTFRPL 204
            IHR +F P+
Sbjct: 236 PIHRRSFAPV 245


>gi|225856834|ref|YP_002738345.1| ribonuclease HII [Streptococcus pneumoniae P1031]
 gi|254807993|sp|C1CKQ7|RNH2_STRZP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|225725074|gb|ACO20926.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae P1031]
          Length = 259

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/204 (44%), Positives = 129/204 (63%), Gaps = 9/204 (4%)

Query: 11  HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           +  LE+M+  EK ++      +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKKI 
Sbjct: 51  NLRLESMLSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            KK  E+++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID  
Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +  DLP    ++IKGD+ SLSIAAASI+AKVTRD LM+   +++  Y F ++ GY TAK
Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFSGYDFATNAGYGTAK 228

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H + + + G + IHR +F P+++L
Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252


>gi|332073501|gb|EGI83980.1| ribonuclease HII [Streptococcus pneumoniae GA17570]
          Length = 260

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/204 (44%), Positives = 129/204 (63%), Gaps = 9/204 (4%)

Query: 11  HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           +  LE+M+  EK ++      +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKKI 
Sbjct: 51  NLRLESMLSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            KK  E+++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID  
Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +  DLP    ++IKGD+ SLSIAAASI+AKVTRD LM+   +++  Y F ++ GY TAK
Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFSGYDFATNAGYGTAK 228

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H + + + G + IHR +F P+++L
Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252


>gi|114570742|ref|YP_757422.1| RNase HII [Maricaulis maris MCS10]
 gi|122315504|sp|Q0AMK3|RNH2_MARMM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|114341204|gb|ABI66484.1| RNase HII [Maricaulis maris MCS10]
          Length = 218

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/184 (46%), Positives = 115/184 (62%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81
           N   +AG+DE GRG L+GPVV AA+ILDP     G+ DSK +S ++R EL+  I ++A +
Sbjct: 20  NTVRIAGVDEAGRGPLSGPVVAAAVILDPTRPITGLGDSKALSERRRRELFRLIRANAWV 79

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
            I  A    ID+ NI  AT+ A+  AV  L V P   L+DG  +P  LPC A A+IKGD+
Sbjct: 80  GIGIAEPAEIDRLNILHATMAAMRRAVARLPVRPTLVLVDGNRLPPGLPCPAEAIIKGDA 139

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
               I AASIIAK  RD LM  A +++P YGF+ H GYP+A H+  ++  G   IHR ++
Sbjct: 140 KEACIGAASIIAKTVRDDLMEQAARRFPGYGFEGHKGYPSAAHKAALETSGACPIHRRSY 199

Query: 202 RPLR 205
            P+R
Sbjct: 200 APVR 203


>gi|292489213|ref|YP_003532100.1| ribonuclease HII [Erwinia amylovora CFBP1430]
 gi|292898553|ref|YP_003537922.1| ribonuclease HII [Erwinia amylovora ATCC 49946]
 gi|291198401|emb|CBJ45508.1| ribonuclease HII [Erwinia amylovora ATCC 49946]
 gi|291554647|emb|CBA22333.1| Ribonuclease HII [Erwinia amylovora CFBP1430]
          Length = 211

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+ILDP+    G+ DSKK+S K+R  LY++I   A+  S+ 
Sbjct: 12  IAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLGDSKKLSEKRRLALYDEIKDKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L + P   LIDG   P  L   + AV+KGDS+  
Sbjct: 72  RAEPEEIDRLNILHATMLAMQRAVAGLHLTPDFVLIDGNRCPA-LAMPSRAVVKGDSLVQ 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I AASI+AKVTRDR M    ++YP YGF  H GYPTA H + + + G +  HR +F P+
Sbjct: 131 EIGAASIMAKVTRDREMCELDQQYPQYGFARHKGYPTALHMEKLAQFGVTPQHRRSFAPV 190

Query: 205 RN 206
           RN
Sbjct: 191 RN 192


>gi|148994505|ref|ZP_01823685.1| ribonuclease HII [Streptococcus pneumoniae SP9-BS68]
 gi|168483218|ref|ZP_02708170.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC1873-00]
 gi|168488985|ref|ZP_02713184.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae SP195]
 gi|147927175|gb|EDK78211.1| ribonuclease HII [Streptococcus pneumoniae SP9-BS68]
 gi|172043371|gb|EDT51417.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC1873-00]
 gi|183572489|gb|EDT93017.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae SP195]
 gi|332201627|gb|EGJ15697.1| ribonuclease HII [Streptococcus pneumoniae GA47368]
          Length = 259

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/204 (44%), Positives = 129/204 (63%), Gaps = 9/204 (4%)

Query: 11  HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           +  LE+M+  EK ++      +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKKI 
Sbjct: 51  NLRLESMLSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            KK  E+++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID  
Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +  DLP    ++IKGD+ SLSIAAASI+AKVTRD LM+   +++  Y F ++ GY TAK
Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFSGYDFATNAGYGTAK 228

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H + + + G + IHR +F P+++L
Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252


>gi|121604674|ref|YP_982003.1| ribonuclease HII [Polaromonas naphthalenivorans CJ2]
 gi|189043638|sp|A1VN54|RNH2_POLNA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|120593643|gb|ABM37082.1| RNase HII [Polaromonas naphthalenivorans CJ2]
          Length = 208

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/180 (46%), Positives = 120/180 (66%), Gaps = 2/180 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DE GRG LAGPVV AA+ILDP N   G+ DSKK++  +RE+LY++I + A+  SI+
Sbjct: 25  MAGVDEAGRGPLAGPVVAAAVILDPFNPIMGLADSKKLTALRREKLYDEIQAKALCCSIA 84

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A+ + ID  NI +AT+ A+  AVE L++ P   L+DG  +P  L   A A++KGD++  
Sbjct: 85  LATVEEIDSLNILQATMLAMKRAVEGLRLKPNKVLVDGNRLPT-LKILAEAIVKGDALVP 143

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKV RDR     H +YP YGF  H GY TA+H   +++ G    HR +F P+
Sbjct: 144 AISAASILAKVYRDRWCGDYHLQYPQYGFAGHKGYGTAEHLAALRQHGACPQHRKSFAPV 203


>gi|288941772|ref|YP_003444012.1| Ribonuclease H [Allochromatium vinosum DSM 180]
 gi|288897144|gb|ADC62980.1| Ribonuclease H [Allochromatium vinosum DSM 180]
          Length = 206

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/180 (49%), Positives = 112/180 (62%), Gaps = 2/180 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DE GRG LAGPV  AA+ILDP     GI DSKK+S  +RE L   I   A+  S++
Sbjct: 13  IAGVDEAGRGPLAGPVCAAAVILDPARPIAGIGDSKKLSPARRERLEPLIRDQALAWSVA 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID+ NI +ATL A+  AVE+LQ+ P  ALIDG   P+ L   A A++ GD    
Sbjct: 73  WASAEEIDRLNILQATLLAMRRAVESLQIRPVKALIDGNRCPQ-LDIAAEAIVGGDGSVP 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I AASI+AKV RDR M     + P YGF  H GYPT +H   I+  GP   HRL+F PL
Sbjct: 132 AIGAASILAKVARDRFMLELDAECPGYGFAKHKGYPTREHLNAIERLGPCRWHRLSFAPL 191


>gi|327462197|gb|EGF08524.1| ribonuclease HII [Streptococcus sanguinis SK1]
          Length = 254

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 90/203 (44%), Positives = 129/203 (63%), Gaps = 9/203 (4%)

Query: 12  FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
             LE M+R EK ++      +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  
Sbjct: 52  LRLEQMLRYEKELYQTGFRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPK 111

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KK +++Y+ +   A+ + +    ++ ID+ NI++AT  A+  A+  L + P   LID   
Sbjct: 112 KKHQDIYQAVMDKALAVGVGLIDNEIIDQVNIYEATKLAMKEALSKLCLKPDYLLIDAMK 171

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +  D+P ++  +IKGD+ SLSIAAASI+AKVTRD+LM    K+YP Y F  + GY T  H
Sbjct: 172 LDIDIPQES--IIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSH 229

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
            Q ++  G + IHR TF P++++
Sbjct: 230 LQGLERHGVTPIHRKTFEPVKSM 252


>gi|258627364|ref|ZP_05722148.1| ribonuclease HII [Vibrio mimicus VM603]
 gi|258580402|gb|EEW05367.1| ribonuclease HII [Vibrio mimicus VM603]
          Length = 206

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/199 (46%), Positives = 119/199 (59%), Gaps = 7/199 (3%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E P FE+ A         +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S KK
Sbjct: 8   ELPPFEIPA-----GYALIAGVDEVGRGPLVGDVVTAAVILDPNRAIVGLNDSKKLSEKK 62

Query: 68  REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L+ +I   A+  S+   S + ID+ NI +AT+ A+  AV  L V P   L+DG  +P
Sbjct: 63  RLALFPEIQEKALAWSVGRCSPREIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNKVP 122

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP  A AV+KGD     I+AASIIAKV RD  M    K+YP +GF  H GYPTA H  
Sbjct: 123 -TLPMDAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAAHFA 181

Query: 187 VIKEKGPSCIHRLTFRPLR 205
            I++ G    HR +F P++
Sbjct: 182 AIEQHGVIEQHRKSFGPVK 200


>gi|299770949|ref|YP_003732975.1| ribonuclease HII [Acinetobacter sp. DR1]
 gi|298701037|gb|ADI91602.1| ribonuclease HII [Acinetobacter sp. DR1]
          Length = 188

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/183 (45%), Positives = 120/183 (65%), Gaps = 5/183 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DE GRG L G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I   A+  SI+
Sbjct: 3   IAGVDEAGRGPLVGSVVAAAVILDPNNPIEGLNDSKKLTEKKREKLFIEIQEKALAWSIA 62

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--PCQAFAVIKGDSI 142
            A+H  ID+ NI +AT  A+  AV+ L+  P+  ++DG  IP+ +  PC+A  ++ GD+ 
Sbjct: 63  EATHAEIDELNILQATFLAMQRAVDGLKAQPQKVIVDGNQIPKGIIIPCEA--IVGGDAS 120

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRDR M    ++YP +GF  H GYPT  H + I   G    HR ++ 
Sbjct: 121 HPEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIATHGVIDQHRRSYA 180

Query: 203 PLR 205
           P++
Sbjct: 181 PVK 183


>gi|160933523|ref|ZP_02080911.1| hypothetical protein CLOLEP_02369 [Clostridium leptum DSM 753]
 gi|156867400|gb|EDO60772.1| hypothetical protein CLOLEP_02369 [Clostridium leptum DSM 753]
          Length = 325

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/191 (47%), Positives = 117/191 (61%), Gaps = 4/191 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +E EA+   K    V G+DE GRG LAGPV  AA+IL P     G+NDSKK++ KKRE L
Sbjct: 6   YEKEAI--SKGYANVCGVDEAGRGPLAGPVYAAAVILPPGLEIEGVNDSKKLTEKKREAL 63

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           + +I   A+   I+SAS + IDK NI  AT  A+  AVE L V    ALIDG  +P  LP
Sbjct: 64  FPEIKEKALAYCIASASEKEIDKLNILNATYLAMARAVEGLPVKADYALIDGNRMPR-LP 122

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                ++KGD +S+SIA ASI+AKVTRD +M    ++YP Y F  H GY T  H  +I+ 
Sbjct: 123 IPGETIVKGDGLSMSIACASILAKVTRDHVMMEWDQRYPQYQFAKHKGYGTKLHMDLIRR 182

Query: 191 KGPSCIHRLTF 201
            GP  +HR +F
Sbjct: 183 YGPCELHRQSF 193


>gi|16078669|ref|NP_389488.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309481|ref|ZP_03591328.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313806|ref|ZP_03595611.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221318730|ref|ZP_03600024.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221323001|ref|ZP_03604295.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. SMY]
 gi|6685901|sp|O31744|RNH2_BACSU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|2633978|emb|CAB13479.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. 168]
          Length = 255

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/194 (43%), Positives = 122/194 (62%), Gaps = 3/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E + R K    +AG+DEVGRG LAGPVV +A+IL       G+ DSKK+S KKREE YE 
Sbjct: 63  ERLARNKGFRLIAGVDEVGRGPLAGPVVASAVILPEECEILGLTDSKKLSEKKREEYYEL 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   A+ + I       ID+ NI++A+  A+  A+++L   P   L+D  ++P D   QA
Sbjct: 123 IMKEALAVGIGIVEATVIDEINIYEASKMAMVKAIQDLSDTPDYLLVDAMTLPLD-TAQA 181

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++IKGD+ S+SIAA + IAKVTRDR+M    + YP YGF+ + GY T +H + +   GP
Sbjct: 182 -SIIKGDAKSVSIAAGACIAKVTRDRMMSAYAETYPMYGFEKNKGYGTKEHLEALAAYGP 240

Query: 194 SCIHRLTFRPLRNL 207
           + +HR TF P+++ 
Sbjct: 241 TELHRKTFAPVQSF 254


>gi|119774290|ref|YP_927030.1| ribonuclease HII [Shewanella amazonensis SB2B]
 gi|189043657|sp|A1S4Q4|RNH2_SHEAM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|119766790|gb|ABL99360.1| Ribonuclease H [Shewanella amazonensis SB2B]
          Length = 206

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/181 (50%), Positives = 116/181 (64%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDPN    G+NDSKK++ KKR+ LY +I   A+ +S+ 
Sbjct: 20  VAGVDEVGRGPLVGDVVTAAVILDPNKPIAGLNDSKKLTEKKRDALYLEIMDKALAVSVG 79

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID+ NI  AT+ A+  AV  L ++P S L+DG   P D    A AV+KGD +  
Sbjct: 80  RASPTEIDELNILHATMLAMQRAVAGLTIVPESVLVDGNRTP-DFGVPAHAVVKGDGLIA 138

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AAS+IAKVTRDR M     +YP YGF  H GYPT  H + I   G    HR +FRP+
Sbjct: 139 AISAASVIAKVTRDREMGELDARYPQYGFAGHKGYPTKAHFEAISAHGVLAEHRRSFRPV 198

Query: 205 R 205
           R
Sbjct: 199 R 199


>gi|225874361|ref|YP_002755820.1| ribonuclease HII [Acidobacterium capsulatum ATCC 51196]
 gi|225794400|gb|ACO34490.1| ribonuclease HII [Acidobacterium capsulatum ATCC 51196]
          Length = 236

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 124/192 (64%), Gaps = 5/192 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYE 73
           E   R++    +AG+DEVGRGAL GPVV AA+IL P+ I   G+ DSK++    RE L  
Sbjct: 30  ERQARQQGATAIAGVDEVGRGALFGPVVAAAVIL-PSRIRLEGLRDSKQLRVSDRERLAT 88

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           ++ + AI ++I+    + ID+ NI++AT  A+  AVE LQ  P   LID   I  D PC 
Sbjct: 89  EVHACAIAVAIAEVDVETIDRINIYQATRLAMLRAVELLQPEPDHLLIDAMRI--DHPCA 146

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++I GDS+SLSIAAAS++AKV RDRL+   H  YP+YG D+H GY T +H+  + + G
Sbjct: 147 QTSIIYGDSLSLSIAAASVVAKVYRDRLVCELHALYPEYGLDAHKGYGTPRHKAALLQYG 206

Query: 193 PSCIHRLTFRPL 204
           P+ +HR +F P+
Sbjct: 207 PTPLHRKSFAPV 218


>gi|239631517|ref|ZP_04674548.1| ribonuclease HII [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239525982|gb|EEQ64983.1| ribonuclease HII [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 252

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 125/192 (65%), Gaps = 8/192 (4%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           E+ +W     VAG+DEVGRG LAGPVV AA+IL P++  + +NDSK+++  +R  LY  I
Sbjct: 60  ERQLWGTYEYVAGLDEVGRGPLAGPVVTAAVIL-PHHFQWPVNDSKQLTAHERNVLYPHI 118

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
            + AI + I  A ++ ID+ NI+ AT  A+  AV++L+V P   L+D   +P DLP +  
Sbjct: 119 LTEAIAVGIGVADNRTIDRENIYHATELAMAQAVDHLRVAPECLLVDAMHVPVDLPQKRL 178

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
             IKGD+ S+SIAAASI+AKV RDRLM++  K YP Y F  ++GY T  H   +   G +
Sbjct: 179 --IKGDANSISIAAASIVAKVIRDRLMKMYDKIYPGYDFKDNMGYGTKAHLAGLAAHGVT 236

Query: 195 CIHRLTFRPLRN 206
            IHR +F P+R+
Sbjct: 237 PIHRRSFGPVRD 248


>gi|56460771|ref|YP_156052.1| ribonuclease HII [Idiomarina loihiensis L2TR]
 gi|81363280|sp|Q5QZK7|RNH2_IDILO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|56179781|gb|AAV82503.1| Ribonuclease HII [Idiomarina loihiensis L2TR]
          Length = 187

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/183 (46%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + G DE GRG +AGPVV AA+ILDP+N   G+NDSKK+S KKRE+L  +I   A+  +I+
Sbjct: 2   ICGTDEAGRGPIAGPVVAAAVILDPDNPIEGLNDSKKLSEKKREKLSLEIKEKALYWAIA 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            +    I+  NI  A++ A+  AVE L V P   L+DG  +PE L   A A++ GD+   
Sbjct: 62  QSDPDEIEAINILWASMKAMQRAVEALPVKPDMVLVDGNRVPE-LKVPAKAIVGGDASEQ 120

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            IAAASI+AKV RDR M   H+ YP Y FD H  Y T KH +++++ GP  IHR  F P+
Sbjct: 121 CIAAASILAKVERDRQMLKWHELYPQYEFDKHKAYGTPKHLELLEKHGPCPIHRKGFNPV 180

Query: 205 RNL 207
           + L
Sbjct: 181 KRL 183


>gi|309389199|gb|ADO77079.1| Ribonuclease H [Halanaerobium praevalens DSM 2228]
          Length = 271

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/193 (43%), Positives = 125/193 (64%), Gaps = 4/193 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           +LE    +K    + GIDE GRG LAGPVV AA++LDP N  +G++DSKK++  KRE L+
Sbjct: 74  QLEKEYSQKGYQVIIGIDEAGRGPLAGPVVAAAVLLDPQNKIYGLDDSKKLNLTKRENLF 133

Query: 73  EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVEN----LQVIPRSALIDGRSIPED 128
           ++I + A + I  A+   IDK+NI +AT  A+  AV++    LQ  P   LIDG ++   
Sbjct: 134 KQIKAKAKVGIGQATSSEIDKYNIREATFTAMKRAVKDLLPKLQKQPDLLLIDGNAVIPG 193

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L  +  ++I GD+   +IAAASIIAKV+RD+L+    +++P+Y  +S+ GY TA+H   +
Sbjct: 194 LTVEQESIIDGDAKVNNIAAASIIAKVSRDKLIYKYAEEFPEYNLESNKGYGTAEHIAAL 253

Query: 189 KEKGPSCIHRLTF 201
           K+ G + IHR +F
Sbjct: 254 KKYGSTPIHRKSF 266


>gi|22126997|ref|NP_670420.1| ribonuclease HII [Yersinia pestis KIM 10]
 gi|45442560|ref|NP_994099.1| ribonuclease HII [Yersinia pestis biovar Microtus str. 91001]
 gi|51597304|ref|YP_071495.1| ribonuclease HII [Yersinia pseudotuberculosis IP 32953]
 gi|108806531|ref|YP_650447.1| ribonuclease HII [Yersinia pestis Antiqua]
 gi|108813102|ref|YP_648869.1| ribonuclease HII [Yersinia pestis Nepal516]
 gi|145598936|ref|YP_001163012.1| ribonuclease HII [Yersinia pestis Pestoides F]
 gi|149366941|ref|ZP_01888974.1| ribonuclease HII [Yersinia pestis CA88-4125]
 gi|153946846|ref|YP_001400011.1| ribonuclease HII [Yersinia pseudotuberculosis IP 31758]
 gi|162421227|ref|YP_001607758.1| ribonuclease HII [Yersinia pestis Angola]
 gi|165927101|ref|ZP_02222933.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165939835|ref|ZP_02228375.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011925|ref|ZP_02232823.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166211521|ref|ZP_02237556.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167400133|ref|ZP_02305651.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167419475|ref|ZP_02311228.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167425410|ref|ZP_02317163.1| ribonuclease HII [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167470459|ref|ZP_02335163.1| ribonuclease HII [Yersinia pestis FV-1]
 gi|186896409|ref|YP_001873521.1| ribonuclease HII [Yersinia pseudotuberculosis PB1/+]
 gi|218928226|ref|YP_002346101.1| ribonuclease HII [Yersinia pestis CO92]
 gi|229837765|ref|ZP_04457925.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis
           Pestoides A]
 gi|229840987|ref|ZP_04461146.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229843088|ref|ZP_04463238.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229903545|ref|ZP_04518658.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis
           Nepal516]
 gi|270487326|ref|ZP_06204400.1| ribonuclease HII [Yersinia pestis KIM D27]
 gi|294503075|ref|YP_003567137.1| ribonuclease HII [Yersinia pestis Z176003]
 gi|29427900|sp|Q8ZH54|RNH2_YERPE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|73917839|sp|Q667K3|RNH2_YERPS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|122980006|sp|Q1CFG1|RNH2_YERPN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|123245970|sp|Q1CAM0|RNH2_YERPA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166226669|sp|A4TL77|RNH2_YERPP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166991071|sp|A7FFI3|RNH2_YERP3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238687277|sp|A9R382|RNH2_YERPG RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238691336|sp|B2JZ20|RNH2_YERPB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|21960043|gb|AAM86671.1|AE013913_1 RNAse HII [Yersinia pestis KIM 10]
 gi|45437425|gb|AAS62976.1| ribonuclease HII [Yersinia pestis biovar Microtus str. 91001]
 gi|51590586|emb|CAH22227.1| ribonuclease HII [Yersinia pseudotuberculosis IP 32953]
 gi|108776750|gb|ABG19269.1| RNase HII [Yersinia pestis Nepal516]
 gi|108778444|gb|ABG12502.1| RNase HII [Yersinia pestis Antiqua]
 gi|115346837|emb|CAL19723.1| ribonuclease HII [Yersinia pestis CO92]
 gi|145210632|gb|ABP40039.1| RNase HII [Yersinia pestis Pestoides F]
 gi|149290555|gb|EDM40631.1| ribonuclease HII [Yersinia pestis CA88-4125]
 gi|152958341|gb|ABS45802.1| ribonuclease HII [Yersinia pseudotuberculosis IP 31758]
 gi|162354042|gb|ABX87990.1| ribonuclease HII [Yersinia pestis Angola]
 gi|165912238|gb|EDR30875.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. IP275]
 gi|165920997|gb|EDR38221.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989191|gb|EDR41492.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166207292|gb|EDR51772.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166962216|gb|EDR58237.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167050841|gb|EDR62249.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167055810|gb|EDR65594.1| ribonuclease HII [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|186699435|gb|ACC90064.1| ribonuclease HII/HIII [Yersinia pseudotuberculosis PB1/+]
 gi|229679315|gb|EEO75418.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis
           Nepal516]
 gi|229689964|gb|EEO82023.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229697353|gb|EEO87400.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229704142|gb|EEO91154.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis
           Pestoides A]
 gi|262361113|gb|ACY57834.1| ribonuclease HII [Yersinia pestis D106004]
 gi|262365353|gb|ACY61910.1| ribonuclease HII [Yersinia pestis D182038]
 gi|270335830|gb|EFA46607.1| ribonuclease HII [Yersinia pestis KIM D27]
 gi|294353534|gb|ADE63875.1| ribonuclease HII [Yersinia pestis Z176003]
 gi|320014192|gb|ADV97763.1| ribonuclease HII [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 198

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 86/183 (46%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+ILDPN    G+ DSKK+S K+R  LY++IT  A+  S+ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPNRPIVGLADSKKLSEKRRLSLYDEITEKALSWSLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L ++P   LIDG   P+ L   + AV+KGDS   
Sbjct: 73  RAEPEEIDQLNILHATMLAMQRAVSGLHIVPDYVLIDGNRCPK-LQMPSLAVVKGDSRVA 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M      +P+YGF  H GYPTA H + +   G +  HR +F P+
Sbjct: 132 EISAASILAKVTRDREMTELDLLFPEYGFAQHKGYPTAFHLEKLAALGATVHHRRSFGPV 191

Query: 205 RNL 207
           + +
Sbjct: 192 KRV 194


>gi|251790731|ref|YP_003005452.1| ribonuclease HII [Dickeya zeae Ech1591]
 gi|247539352|gb|ACT07973.1| Ribonuclease H [Dickeya zeae Ech1591]
          Length = 198

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 114/182 (62%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPN    G+ DSK +S K+R  LY++I   A+  S+ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPNRPIVGLADSKTLSEKRRLALYDEIREKALAWSLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID  NI  AT+ A+  AV  L V P   LIDG   P  LP  + AV+KGDS   
Sbjct: 73  RAEPEEIDTLNILHATMLAMQRAVAALPVTPDFVLIDGNRCPA-LPMPSQAVVKGDSRVA 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M +  +++P+YGF  H GYPTA H + +   G +  HR +F P+
Sbjct: 132 EISAASILAKVTRDREMEVLDRQFPEYGFAQHKGYPTAYHLEKLATLGATLHHRRSFAPV 191

Query: 205 RN 206
           + 
Sbjct: 192 KR 193


>gi|167000564|ref|ZP_02266375.1| ribonuclease HII [Burkholderia mallei PRL-20]
 gi|243063495|gb|EES45681.1| ribonuclease HII [Burkholderia mallei PRL-20]
          Length = 214

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 124/182 (68%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           V G+DE GRG LAGPVV AA++LDP     G++DSK +S KKRE L+++I + A+  S++
Sbjct: 28  VCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIAAYALAYSVA 87

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS + ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  ++ A++ GD++  
Sbjct: 88  SASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM-LAIRSEAIVGGDALVP 146

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI+AASI+AKVTRDR++   H+++P YGFD+H GY T +H   ++E GP   HR +F P+
Sbjct: 147 SISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAPV 206

Query: 205 RN 206
           R 
Sbjct: 207 RE 208


>gi|134277824|ref|ZP_01764539.1| ribonuclease HII [Burkholderia pseudomallei 305]
 gi|134251474|gb|EBA51553.1| ribonuclease HII [Burkholderia pseudomallei 305]
          Length = 214

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 124/182 (68%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           V G+DE GRG LAGPVV AA++LDP     G++DSK +S KKRE L+++I + A+  S++
Sbjct: 28  VCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAHALAYSVA 87

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS + ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  ++ A++ GD++  
Sbjct: 88  SASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM-LAIRSEAIVGGDALVP 146

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI+AASI+AKVTRDR++   H+++P YGFD+H GY T +H   ++E GP   HR +F P+
Sbjct: 147 SISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAPV 206

Query: 205 RN 206
           R 
Sbjct: 207 RE 208


>gi|157372011|ref|YP_001480000.1| ribonuclease HII [Serratia proteamaculans 568]
 gi|166991070|sp|A8GID2|RNH2_SERP5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157323775|gb|ABV42872.1| Ribonuclease H [Serratia proteamaculans 568]
          Length = 197

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 87/183 (47%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++I   A+  S+ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPARPIVGLADSKKLSEKRRLALYDEIVEKALSWSLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP ++ AV+KGDS   
Sbjct: 73  RAEPDEIDQLNILHATMLAMQRAVAGLHIAPDMVLIDGNRCPK-LPMRSQAVVKGDSRVA 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M    +++PDYGF  H GYPTA H + +   G +  HR +F P+
Sbjct: 132 EISAASILAKVTRDREMTELDREFPDYGFAQHKGYPTAFHLERLAALGATEHHRRSFAPV 191

Query: 205 RNL 207
           R +
Sbjct: 192 RRV 194


>gi|254179336|ref|ZP_04885935.1| ribonuclease HII [Burkholderia pseudomallei 1655]
 gi|184209876|gb|EDU06919.1| ribonuclease HII [Burkholderia pseudomallei 1655]
          Length = 214

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 124/182 (68%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           V G+DE GRG LAGPVV AA++LDP     G++DSK +S KKRE L+++I + A+  S++
Sbjct: 28  VCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAHALAYSVA 87

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS + ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  ++ A++ GD++  
Sbjct: 88  SASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM-LAIRSEAIVGGDALVP 146

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI+AASI+AKVTRDR++   H+++P YGFD+H GY T +H   ++E GP   HR +F P+
Sbjct: 147 SISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAPV 206

Query: 205 RN 206
           R 
Sbjct: 207 RE 208


>gi|259046715|ref|ZP_05737116.1| ribonuclease HII [Granulicatella adiacens ATCC 49175]
 gi|259036611|gb|EEW37866.1| ribonuclease HII [Granulicatella adiacens ATCC 49175]
          Length = 256

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 89/210 (42%), Positives = 125/210 (59%), Gaps = 7/210 (3%)

Query: 2   FCNSIPERPHFE----LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI 57
           F        HFE     E   ++K    +AGIDEVGRG LAGPVV AA+IL       G+
Sbjct: 46  FAKKAERAAHFEEMQSFERAAQQKGYRMIAGIDEVGRGPLAGPVVAAAVILPEGMEDIGL 105

Query: 58  NDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116
           +DSKK+S K+REE++E I   A+ I I       IDK NI++A+  A+  A+E L   P 
Sbjct: 106 DDSKKLSAKRREEIFEMIKEQAVAIGIGIVDAFTIDKINIYEASKVAMKRAIELLPEQPD 165

Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
             LID   +   +P +   +IKGD+ S+SIAAASI+AK  RD++M+   + YP YGF  +
Sbjct: 166 YLLIDAMRLDTGIPQEG--IIKGDAKSISIAAASIVAKEVRDQMMKDYEQLYPGYGFAQN 223

Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
            GY T  H + +++ GP+ IHR+TF P++ 
Sbjct: 224 AGYGTKAHIEGLEKLGPTPIHRMTFAPVKE 253


>gi|53723725|ref|YP_103181.1| ribonuclease HII [Burkholderia mallei ATCC 23344]
 gi|67641696|ref|ZP_00440465.1| ribonuclease HII [Burkholderia mallei GB8 horse 4]
 gi|121600420|ref|YP_993357.1| ribonuclease HII [Burkholderia mallei SAVP1]
 gi|124383370|ref|YP_001029206.1| ribonuclease HII [Burkholderia mallei NCTC 10229]
 gi|126448047|ref|YP_001080864.1| ribonuclease HII [Burkholderia mallei NCTC 10247]
 gi|126454836|ref|YP_001066737.1| ribonuclease HII [Burkholderia pseudomallei 1106a]
 gi|167816367|ref|ZP_02448047.1| ribonuclease HII [Burkholderia pseudomallei 91]
 gi|167846278|ref|ZP_02471786.1| ribonuclease HII [Burkholderia pseudomallei B7210]
 gi|167894859|ref|ZP_02482261.1| ribonuclease HII [Burkholderia pseudomallei 7894]
 gi|167919499|ref|ZP_02506590.1| ribonuclease HII [Burkholderia pseudomallei BCC215]
 gi|217421612|ref|ZP_03453116.1| ribonuclease HII [Burkholderia pseudomallei 576]
 gi|242316504|ref|ZP_04815520.1| ribonuclease HII [Burkholderia pseudomallei 1106b]
 gi|254177550|ref|ZP_04884205.1| ribonuclease HII [Burkholderia mallei ATCC 10399]
 gi|254200133|ref|ZP_04906499.1| ribonuclease HII [Burkholderia mallei FMH]
 gi|254206471|ref|ZP_04912823.1| ribonuclease HII [Burkholderia mallei JHU]
 gi|254358121|ref|ZP_04974394.1| ribonuclease HII [Burkholderia mallei 2002721280]
 gi|81604828|sp|Q62JD8|RNH2_BURMA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166225173|sp|A3MKS8|RNH2_BURM7 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166225174|sp|A2SB87|RNH2_BURM9 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166225175|sp|A1V554|RNH2_BURMS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166225176|sp|A3NWL6|RNH2_BURP0 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|52427148|gb|AAU47741.1| ribonuclease HII [Burkholderia mallei ATCC 23344]
 gi|121229230|gb|ABM51748.1| ribonuclease HII [Burkholderia mallei SAVP1]
 gi|124291390|gb|ABN00659.1| ribonuclease HII [Burkholderia mallei NCTC 10229]
 gi|126228478|gb|ABN92018.1| ribonuclease HII [Burkholderia pseudomallei 1106a]
 gi|126240917|gb|ABO04010.1| ribonuclease HII [Burkholderia mallei NCTC 10247]
 gi|147749729|gb|EDK56803.1| ribonuclease HII [Burkholderia mallei FMH]
 gi|147753914|gb|EDK60979.1| ribonuclease HII [Burkholderia mallei JHU]
 gi|148027248|gb|EDK85269.1| ribonuclease HII [Burkholderia mallei 2002721280]
 gi|160698589|gb|EDP88559.1| ribonuclease HII [Burkholderia mallei ATCC 10399]
 gi|217395354|gb|EEC35372.1| ribonuclease HII [Burkholderia pseudomallei 576]
 gi|238522657|gb|EEP86100.1| ribonuclease HII [Burkholderia mallei GB8 horse 4]
 gi|242139743|gb|EES26145.1| ribonuclease HII [Burkholderia pseudomallei 1106b]
          Length = 214

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 124/182 (68%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           V G+DE GRG LAGPVV AA++LDP     G++DSK +S KKRE L+++I + A+  S++
Sbjct: 28  VCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAYALAYSVA 87

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS + ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  ++ A++ GD++  
Sbjct: 88  SASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM-LAIRSEAIVGGDALVP 146

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI+AASI+AKVTRDR++   H+++P YGFD+H GY T +H   ++E GP   HR +F P+
Sbjct: 147 SISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAPV 206

Query: 205 RN 206
           R 
Sbjct: 207 RE 208


>gi|227893503|ref|ZP_04011308.1| ribonuclease HII [Lactobacillus ultunensis DSM 16047]
 gi|227864673|gb|EEJ72094.1| ribonuclease HII [Lactobacillus ultunensis DSM 16047]
          Length = 250

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 90/205 (43%), Positives = 124/205 (60%), Gaps = 7/205 (3%)

Query: 8   ERPHFELEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           E+    L+    EK  W     V G+DEVGRG LAGPVV AA+I+D +     +NDSKK+
Sbjct: 46  EKKESFLKRFSYEKEFWQKNQCVGGVDEVGRGPLAGPVVTAAVIIDQDFDLLDVNDSKKL 105

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           S ++R +LY KI   A+ + I   S   ID+ NI++A   A+  AV  L + P + L+D 
Sbjct: 106 SPERRLKLYPKILEEAVSVGIGVKSPAVIDQINIYEADRQAMAQAVRALNIKPDALLVDA 165

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
             +  DLP     +IKGD+ S SIAAASI+AKV RD+LM    K YP YGF ++ GY T 
Sbjct: 166 MDVSVDLP--QVKLIKGDAKSNSIAAASIVAKVFRDKLMDDYAKIYPQYGFPNNAGYGTK 223

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207
           +H + +K+ GP+ IHR TF P+ + 
Sbjct: 224 EHIEALKKYGPTPIHRKTFAPVSDF 248


>gi|312883822|ref|ZP_07743541.1| ribonuclease HII [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368571|gb|EFP96104.1| ribonuclease HII [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 202

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 90/181 (49%), Positives = 112/181 (61%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S KKR  L+ +I   A+  SI 
Sbjct: 17  IAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSEKKRLALFPEIKEKALAWSIG 76

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S   IDK NI  AT+ A+  A+ENL ++P  ALIDG   P  LP  A +V+KGD    
Sbjct: 77  RCSPVEIDKLNILHATMVAMQRAIENLNIMPDLALIDGNRCPH-LPMAAQSVVKGDLRVA 135

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKV RD  M      YP+YGF  H GYPT  H   I+  G    HR +F+P+
Sbjct: 136 EISAASIIAKVVRDSEMAQLDSLYPEYGFAQHKGYPTKAHLNAIEAHGVIEQHRKSFKPV 195

Query: 205 R 205
           +
Sbjct: 196 K 196


>gi|167720149|ref|ZP_02403385.1| ribonuclease HII [Burkholderia pseudomallei DM98]
 gi|167739156|ref|ZP_02411930.1| ribonuclease HII [Burkholderia pseudomallei 14]
 gi|167824746|ref|ZP_02456217.1| ribonuclease HII [Burkholderia pseudomallei 9]
 gi|167903248|ref|ZP_02490453.1| ribonuclease HII [Burkholderia pseudomallei NCTC 13177]
 gi|167911490|ref|ZP_02498581.1| ribonuclease HII [Burkholderia pseudomallei 112]
 gi|226200132|ref|ZP_03795678.1| ribonuclease HII [Burkholderia pseudomallei Pakistan 9]
 gi|254297220|ref|ZP_04964673.1| ribonuclease HII [Burkholderia pseudomallei 406e]
 gi|157807288|gb|EDO84458.1| ribonuclease HII [Burkholderia pseudomallei 406e]
 gi|225927816|gb|EEH23857.1| ribonuclease HII [Burkholderia pseudomallei Pakistan 9]
          Length = 214

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 124/182 (68%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           V G+DE GRG LAGPVV AA++LDP     G++DSK +S KKRE L+++I + A+  S++
Sbjct: 28  VCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAHALAYSVA 87

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS + ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  ++ A++ GD++  
Sbjct: 88  SASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM-LAIRSEAIVGGDALVP 146

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI+AASI+AKVTRDR++   H+++P YGFD+H GY T +H   ++E GP   HR +F P+
Sbjct: 147 SISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAPV 206

Query: 205 RN 206
           R 
Sbjct: 207 RE 208


>gi|254228402|ref|ZP_04921828.1| ribonuclease HII [Vibrio sp. Ex25]
 gi|262393534|ref|YP_003285388.1| ribonuclease HII [Vibrio sp. Ex25]
 gi|151938990|gb|EDN57822.1| ribonuclease HII [Vibrio sp. Ex25]
 gi|262337128|gb|ACY50923.1| ribonuclease HII [Vibrio sp. Ex25]
          Length = 211

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L G VV AA+ILDPNN   G+NDSKK++ KKR  L  +I   A+  ++ 
Sbjct: 26  VAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLTEKKRMALLPEIKEKALAWAVG 85

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S + ID+ NI +AT+ A+  AV  L+V P   LIDG   PE LP  A AV+KGD    
Sbjct: 86  RCSPEEIDQLNILQATMVAMQRAVAGLKVQPDLVLIDGNRCPE-LPMDAQAVVKGDLRVA 144

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKV RD+ M    K +P +GF  H GYPT  H + I++ G    HR +F+P+
Sbjct: 145 EISAASIIAKVVRDQEMEELDKLHPQFGFAKHKGYPTKAHFEAIEQHGVISEHRKSFKPV 204

Query: 205 RN 206
           + 
Sbjct: 205 KK 206


>gi|258621010|ref|ZP_05716044.1| ribonuclease HII [Vibrio mimicus VM573]
 gi|258586398|gb|EEW11113.1| ribonuclease HII [Vibrio mimicus VM573]
          Length = 206

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/199 (46%), Positives = 119/199 (59%), Gaps = 7/199 (3%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E P FE+ A         +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S KK
Sbjct: 8   ELPPFEIPA-----GYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSEKK 62

Query: 68  REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L+ +I   A+  S+   S + ID+ NI +AT+ A+  AV  L V P   L+DG  +P
Sbjct: 63  RLALFPEIQEKALAWSVGRCSPREIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNKVP 122

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP  A AV+KGD     I+AASIIAKV RD  M    K+YP +GF  H GYPTA H  
Sbjct: 123 -TLPTDAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAAHFA 181

Query: 187 VIKEKGPSCIHRLTFRPLR 205
            I++ G    HR +F P++
Sbjct: 182 AIEQHGVIEQHRKSFGPVK 200


>gi|260581887|ref|ZP_05849683.1| ribonuclease HII [Haemophilus influenzae NT127]
 gi|260095080|gb|EEW78972.1| ribonuclease HII [Haemophilus influenzae NT127]
          Length = 197

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 84/182 (46%), Positives = 118/182 (64%), Gaps = 1/182 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L ++I   A+  ++ 
Sbjct: 11  IAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALADEIKEKALAWALG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI +A+L A+  AV++L++ P   L+DG  IP+DL   + AV+KGDS+  
Sbjct: 71  RAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPSQAVVKGDSLVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR +F P+
Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAELGALPQHRRSFAPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KK 192


>gi|240947970|ref|ZP_04752396.1| ribonuclease HII [Actinobacillus minor NM305]
 gi|240297726|gb|EER48187.1| ribonuclease HII [Actinobacillus minor NM305]
          Length = 196

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 87/181 (48%), Positives = 116/181 (64%), Gaps = 4/181 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR +L E+I + A+  S+ 
Sbjct: 12  IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLSEKKRLKLAEEIKAKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            A  + ID+ NI  AT+ A+  AV  L + P   L+DG  IP   +P QA  V+KGDS+ 
Sbjct: 72  RAEPEEIDQLNILHATMLAMQRAVAGLHIQPDFVLVDGNRIPTLSMPAQA--VVKGDSLV 129

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKV RD  M    K++P+YGF  H GYPT  H + + E G +  HR +F P
Sbjct: 130 QEISAASILAKVARDLEMDELDKQFPEYGFAKHKGYPTKLHFEKLTELGATPFHRKSFAP 189

Query: 204 L 204
           +
Sbjct: 190 V 190


>gi|238918789|ref|YP_002932303.1| ribonuclease HII [Edwardsiella ictaluri 93-146]
 gi|259494064|sp|C5B7S2|RNH2_EDWI9 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238868357|gb|ACR68068.1| ribonuclease HII [Edwardsiella ictaluri 93-146]
          Length = 197

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 87/183 (47%), Positives = 115/183 (62%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++I   A+  S+ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPARPIAGLADSKKLSEKRRNALYDEIVEKALCWSLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI +AT+ A+  AV  L   P   LIDG   P  LP  A AV+KGDS   
Sbjct: 73  RAEAEEIDRLNILQATMVAMQRAVAGLARQPDFVLIDGNRCPA-LPMAAQAVVKGDSRVA 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M    ++YP+YGF  H GYPTA H + +   G +  HR +F P+
Sbjct: 132 EISAASILAKVTRDREMAALDRQYPEYGFARHKGYPTALHLERLAALGATEHHRRSFGPV 191

Query: 205 RNL 207
           + +
Sbjct: 192 KRV 194


>gi|262170785|ref|ZP_06038463.1| ribonuclease HII [Vibrio mimicus MB-451]
 gi|261891861|gb|EEY37847.1| ribonuclease HII [Vibrio mimicus MB-451]
          Length = 206

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/199 (46%), Positives = 119/199 (59%), Gaps = 7/199 (3%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E P FE+ A         +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S KK
Sbjct: 8   ELPPFEIPA-----GYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSEKK 62

Query: 68  REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L+ +I   A+  S+   S + ID+ NI +AT+ A+  AV  L V P   L+DG  +P
Sbjct: 63  RLALFPEIQEKALAWSVGRCSPREIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNKVP 122

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP  A AV+KGD     I+AASIIAKV RD  M    K+YP +GF  H GYPTA H  
Sbjct: 123 -TLPMDAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAAHFA 181

Query: 187 VIKEKGPSCIHRLTFRPLR 205
            I++ G    HR +F P++
Sbjct: 182 AIEQHGVIEQHRKSFGPVK 200


>gi|330959212|gb|EGH59472.1| ribonuclease HII [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 217

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 86/181 (47%), Positives = 115/181 (63%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  KRE+L+ +I   A+   I+
Sbjct: 14  VAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEAKREKLFVEIQEKALCWFIA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AVE L + P+ ALIDG   P+ L   +  V++GD+   
Sbjct: 74  RAEVEEIDQLNILHATMLAMKRAVEGLVITPKLALIDGNRCPQ-LSVPSAPVVQGDAKVP 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P+
Sbjct: 133 AIAAASILAKVSRDREMAALELVYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 192

Query: 205 R 205
           R
Sbjct: 193 R 193


>gi|260767811|ref|ZP_05876746.1| ribonuclease HII [Vibrio furnissii CIP 102972]
 gi|260617320|gb|EEX42504.1| ribonuclease HII [Vibrio furnissii CIP 102972]
          Length = 206

 Score =  155 bits (392), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/183 (48%), Positives = 115/183 (62%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPN+   G+NDSKK+S KKR  L  +I   A+  S+ 
Sbjct: 21  IAGVDEVGRGPLVGDVVTAAVILDPNHPIEGLNDSKKLSEKKRLALLPEIQQKALAWSVG 80

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S Q ID+ NI +AT+ A+  AV+ L + P   L+DG  IP  LP  A AV+KGD    
Sbjct: 81  RCSPQEIDELNIFQATMLAMQRAVDGLAIKPDLVLVDGNKIP-SLPMDAQAVVKGDLRVA 139

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKV RD+ M    K YP +GF  H GYPT  H + I++ G    HR +F P+
Sbjct: 140 QISAASIIAKVVRDQEMEELDKAYPQFGFAKHKGYPTKAHFEAIEQHGVIDQHRRSFGPV 199

Query: 205 RNL 207
           + +
Sbjct: 200 KRV 202


>gi|83313088|ref|YP_423352.1| ribonuclease HII [Magnetospirillum magneticum AMB-1]
 gi|11387098|sp|Q50412|RNH2_MAGMM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|1054584|dbj|BAA06983.1| unnamed protein product [Magnetospirillum magneticum AMB-1]
 gi|82947929|dbj|BAE52793.1| Ribonuclease HII [Magnetospirillum magneticum AMB-1]
          Length = 201

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 117/183 (63%), Gaps = 5/183 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYEKITSSAII 81
           V GIDEVGRG LAGPVV AA+ILDP  +P  +    +DSKK+S + REEL E + ++AI+
Sbjct: 14  VCGIDEVGRGPLAGPVVAAAVILDPARLPKTLLERLDDSKKLSKRNREELAELVPATAIL 73

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
               AS + ID+ NI +AT  A+  A + L      AL+DG   P  LPC    V+ GD 
Sbjct: 74  GFGEASVEEIDRINILQATFLAMRRAYDALGRECAHALVDGNR-PPGLPCPVRCVVGGDG 132

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           ISLSIAAAS++AKV RD +M    + +P++G++ + GY TA+H   +K  GP+  HR +F
Sbjct: 133 ISLSIAAASVVAKVRRDAMMADLARAHPEFGWERNAGYGTAEHLDALKRLGPTPHHRRSF 192

Query: 202 RPL 204
            P+
Sbjct: 193 APV 195


>gi|323495348|ref|ZP_08100426.1| ribonuclease HII [Vibrio brasiliensis LMG 20546]
 gi|323310419|gb|EGA63605.1| ribonuclease HII [Vibrio brasiliensis LMG 20546]
          Length = 205

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 115/181 (63%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KKR  L  +I   A+  S+ 
Sbjct: 20  VAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEKALAWSVG 79

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S + ID+ NI +AT+ A+  A+  L V P  ALIDG   PE LP  + AV+KGD    
Sbjct: 80  RCSPEEIDQLNILQATMVAMQRAIAGLGVQPDLALIDGNRCPE-LPMDSQAVVKGDLRVA 138

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKV RD+ M    K +P +GF  H GYPT  H + I++ G    HR +F+P+
Sbjct: 139 EISAASIIAKVVRDQEMEELDKLHPQFGFAKHKGYPTKAHFEAIEQHGVIEQHRKSFKPV 198

Query: 205 R 205
           +
Sbjct: 199 K 199


>gi|268319575|ref|YP_003293231.1| hypothetical protein FI9785_1100 [Lactobacillus johnsonii FI9785]
 gi|262397950|emb|CAX66964.1| rnhB [Lactobacillus johnsonii FI9785]
          Length = 250

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 87/190 (45%), Positives = 124/190 (65%), Gaps = 7/190 (3%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           EK  W     VAG+DEVGRG LAGPVV AA+IL  +     +NDSKK+S KKR+ L+ KI
Sbjct: 58  EKEFWQKDQLVAGVDEVGRGPLAGPVVTAAVILPHDFDLIDVNDSKKLSPKKRQALFPKI 117

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
              A+ +S+  A++  ID+ NI++A   A+ HAV+ L+V P + L+D  ++P ++P    
Sbjct: 118 LEKAVSVSVGLANNDLIDQINIYEADRVAMAHAVQGLKVKPDALLVDAMNVPLNIP--QV 175

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            +I GD+ S SIAAASI+AKV RD LM    + YP+Y F  + GY T +H + +K+ GP+
Sbjct: 176 KLIHGDAKSNSIAAASIVAKVFRDNLMDAYGELYPEYDFKHNAGYGTREHMEALKKYGPT 235

Query: 195 CIHRLTFRPL 204
            IHR +F P+
Sbjct: 236 PIHRRSFAPV 245


>gi|322391939|ref|ZP_08065403.1| ribonuclease HII [Streptococcus peroris ATCC 700780]
 gi|321145165|gb|EFX40562.1| ribonuclease HII [Streptococcus peroris ATCC 700780]
          Length = 262

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 89/204 (43%), Positives = 128/204 (62%), Gaps = 9/204 (4%)

Query: 11  HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           +  LE M+  EK ++      +AG+DEVGRG LAGPVV AA+IL       G+NDSK+I 
Sbjct: 51  NLRLEGMLSYEKELYAQGLNLIAGVDEVGRGPLAGPVVAAAVILPKKCKIKGLNDSKQIP 110

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            KK  E+++ +  +A+ I I    +  ID+ NI++AT  A+  A+  L+  P   LID  
Sbjct: 111 KKKHREVFQAVKDNALAIGIGIMDNHIIDQVNIYEATKLAMKEAISQLESQPEHLLIDAM 170

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +  DLP    ++IKGD+ SLSIAAASI+AKVTRD LM    +++P Y F+ + GY TAK
Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDDLMVTYGQQFPGYDFEHNAGYGTAK 228

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H + IK+ G + IHR +F P+++ 
Sbjct: 229 HLEGIKQYGITSIHRRSFEPIKSF 252


>gi|327470026|gb|EGF15490.1| ribonuclease HII [Streptococcus sanguinis SK330]
          Length = 254

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 90/203 (44%), Positives = 129/203 (63%), Gaps = 9/203 (4%)

Query: 12  FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
             LE M++ EK ++      +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  
Sbjct: 52  LRLEQMLQHEKELYKAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPK 111

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KK +E+Y+ +   A+ + I    +  IDK NI++AT  A+  A+  L++ P   LID   
Sbjct: 112 KKHQEIYQAVLDKALAVGIGLMDNDIIDKVNIYEATKLAMKEALSKLRLKPDYLLIDAIK 171

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +  ++P ++  +IKGD+ SLSIAAASI+AKVTRD+LM    K++P Y F  + GY T  H
Sbjct: 172 LDVEIPQES--IIKGDANSLSIAAASIVAKVTRDKLMADYDKEFPGYDFAQNAGYGTKSH 229

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
            Q ++  G + IHR TF P++++
Sbjct: 230 LQGLERHGVTPIHRKTFEPIKSM 252


>gi|303228938|ref|ZP_07315748.1| ribonuclease HII [Veillonella atypica ACS-134-V-Col7a]
 gi|302516352|gb|EFL58284.1| ribonuclease HII [Veillonella atypica ACS-134-V-Col7a]
          Length = 266

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/197 (44%), Positives = 134/197 (68%), Gaps = 2/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           ++ E M  ++ ++ VAG+DEVGRG +AGPV VAA+IL P  +  G+NDSKK++ +KRE L
Sbjct: 63  YDYEGMFYDEGLYHVAGVDEVGRGPIAGPVTVAAVILPPMTLISGLNDSKKLTEEKREAL 122

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I + A+ +S  S S + ID+ NI++AT  A+Y A+  L V   + + D   +P DL 
Sbjct: 123 YDIIMNEAVAVSCISYSPEKIDELNIYEATRQAMYEAIRTLDVPAEAVVADAMKLP-DLT 181

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGDS S +IAAASIIAKVTRDR M+   ++YP YGF  H GY T  H++ +++
Sbjct: 182 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDEEYPGYGFGIHKGYYTELHKEALEQ 241

Query: 191 KGPSCIHRLTFRPLRNL 207
           +G + +HR +F P++++
Sbjct: 242 QGVTPLHRKSFEPIKSI 258


>gi|329667434|gb|AEB93382.1| ribonuclease HII [Lactobacillus johnsonii DPC 6026]
          Length = 250

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 87/190 (45%), Positives = 124/190 (65%), Gaps = 7/190 (3%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           EK  W     VAG+DEVGRG LAGPVV AA+IL  +     +NDSKK+S KKR+ L+ KI
Sbjct: 58  EKEFWQKDQLVAGVDEVGRGPLAGPVVTAAVILPHDFDLIDVNDSKKLSPKKRQALFPKI 117

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
              A+ +S+  A++  ID+ NI++A   A+ HAV+ L+V P + L+D  ++P ++P    
Sbjct: 118 LEKAVSVSVGLANNDVIDQINIYEADRVAMAHAVQGLKVKPDALLVDAMNVPLNIP--QV 175

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            +I GD+ S SIAAASI+AKV RD LM    + YP+Y F  + GY T +H + +K+ GP+
Sbjct: 176 KLIHGDAKSNSIAAASIVAKVFRDNLMDAYGELYPEYDFKHNAGYGTREHMEALKKYGPT 235

Query: 195 CIHRLTFRPL 204
            IHR +F P+
Sbjct: 236 PIHRRSFAPV 245


>gi|307260586|ref|ZP_07542278.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306869663|gb|EFN01448.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
          Length = 186

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 87/183 (47%), Positives = 117/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L  +I + A+  S+ 
Sbjct: 2   IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLLLAGEIKAKALCWSLG 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L + P   L+DG  IP  LP  A AVIKGDS+  
Sbjct: 62  RAEPEEIDRLNILHATMLAMQRAVAGLNIQPDFVLVDGNRIP-TLPMPAQAVIKGDSLVA 120

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M     +YP+YGF  H GYPT  H + +++ G +  HR +F P+
Sbjct: 121 EISAASILAKVARDQEMAELDVQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKSFAPV 180

Query: 205 RNL 207
           + +
Sbjct: 181 KKI 183


>gi|225374458|ref|ZP_03751679.1| hypothetical protein ROSEINA2194_00073 [Roseburia inulinivorans DSM
           16841]
 gi|225213696|gb|EEG96050.1| hypothetical protein ROSEINA2194_00073 [Roseburia inulinivorans DSM
           16841]
          Length = 253

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 89/177 (50%), Positives = 116/177 (65%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG LAGPVV  A+IL  +     INDSKK+S  KREELY+ I   A+ + I 
Sbjct: 73  ICGIDEVGRGPLAGPVVAGAVILPKDCDILYINDSKKLSAAKREELYDVIMEKAVAVGIG 132

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS Q ID+ NI +AT +A+  A+  L V P   L D  +IP  +  +   +IKGD+ S+
Sbjct: 133 MASSQRIDEINILQATYEAMREAISKLSVKPDILLNDAVTIP-GVSIRQVPIIKGDAKSI 191

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SI AASI+AKVTRDRLM    K  P YGF S+ GY +A+H + ++E GPS IHR++F
Sbjct: 192 SIGAASIVAKVTRDRLMVEYDKILPQYGFASNKGYGSAEHIRALQEAGPSPIHRVSF 248


>gi|116494884|ref|YP_806618.1| ribonuclease HII [Lactobacillus casei ATCC 334]
 gi|301066445|ref|YP_003788468.1| ribonuclease HII [Lactobacillus casei str. Zhang]
 gi|122263698|sp|Q039E6|RNH2_LACC3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|116105034|gb|ABJ70176.1| RNase HII [Lactobacillus casei ATCC 334]
 gi|300438852|gb|ADK18618.1| Ribonuclease HII [Lactobacillus casei str. Zhang]
          Length = 252

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 124/192 (64%), Gaps = 8/192 (4%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           E+ +W     VAG+DEVGRG LAGPVV AA+IL P++  + +NDSK+++  +R  LY  I
Sbjct: 60  ERQLWGTYEYVAGLDEVGRGPLAGPVVTAAVIL-PHHFQWPVNDSKQLTAHERNVLYPHI 118

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
            + AI + I  A ++ ID+ NI+ AT  A+  AV++L+V P   L+D   +P DLP +  
Sbjct: 119 LTEAIAVGIGVADNRTIDRENIYHATELAMAQAVDHLRVAPECLLVDAMHVPVDLPQKRL 178

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
             IKGD+ S+SIAAASI+AKV RDRLM +  K YP Y F  ++GY T  H   +   G +
Sbjct: 179 --IKGDANSISIAAASIVAKVIRDRLMMMYDKIYPGYDFKDNMGYGTKAHLAGLAAHGVT 236

Query: 195 CIHRLTFRPLRN 206
            IHR +F P+R+
Sbjct: 237 PIHRRSFGPVRD 248


>gi|310764936|gb|ADP09886.1| Ribonuclease HII [Erwinia sp. Ejp617]
          Length = 207

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+ILDP+    G+ DSKK+S K+R  LY++I   A+  S+ 
Sbjct: 12  IAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLGDSKKLSEKRRLALYDEIKDKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L + P   LIDG   P  L   + AV+KGDS+  
Sbjct: 72  RAEPEEIDRLNILHATMLAMQRAVAGLHLTPDFVLIDGNRCPA-LAMPSRAVVKGDSLVP 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M    ++YP YGF  H GYPTA H + +   G +  HR +F P+
Sbjct: 131 EISAASIMAKVTRDREMCELDQQYPQYGFARHKGYPTAVHMEKLARFGVTPQHRRSFAPV 190

Query: 205 RN 206
           RN
Sbjct: 191 RN 192


>gi|307129834|ref|YP_003881850.1| ribonuclease HII [Dickeya dadantii 3937]
 gi|306527363|gb|ADM97293.1| ribonuclease HII [Dickeya dadantii 3937]
          Length = 198

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 85/182 (46%), Positives = 114/182 (62%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPN    G+ DSK +S K+R  LY++I   A+  S+ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPNRPIAGLADSKTLSEKRRLALYDEIREKALAWSLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID  NI  AT+ A+  AV  L + P   LIDG   P  LP  + AV+KGDS   
Sbjct: 73  RAEPEEIDSLNILHATMLAMQRAVAGLPITPDFVLIDGNRCP-SLPMPSQAVVKGDSRVA 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M +  +++P+YGF  H GYPTA H + +   G +  HR +F P+
Sbjct: 132 EISAASILAKVTRDREMEVLDQQFPEYGFAQHKGYPTAYHLEKLATLGATLHHRRSFAPV 191

Query: 205 RN 206
           + 
Sbjct: 192 KR 193


>gi|260220952|emb|CBA29032.1| Ribonuclease HII [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 193

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 87/180 (48%), Positives = 119/180 (66%), Gaps = 2/180 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DE GRG LAGPVV AA+ILD      G+NDSKK+S  +RE+L+++I + A+  SI+
Sbjct: 11  VAGVDEAGRGPLAGPVVAAAVILDDLRPIAGLNDSKKLSAARREKLFDEIRAKALCCSIA 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID+ NI +ATL A+  AVE L++ P   L+DG  +P  L   A A++KGD+   
Sbjct: 71  QASVEEIDEINILQATLLAMRRAVEGLRLKPAKVLVDGNRLPV-LDVLAEAIVKGDATVP 129

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKVTRDR       +YP YGF +H GY TA+H   ++  G    HR TF P+
Sbjct: 130 AISAASILAKVTRDRWCAELDARYPQYGFATHKGYGTAEHLAALQTHGACPEHRKTFAPV 189


>gi|191638395|ref|YP_001987561.1| ribonuclease HII [Lactobacillus casei BL23]
 gi|238693037|sp|B3WEA2|RNH2_LACCB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|190712697|emb|CAQ66703.1| Ribonuclease HII (RNase HII) [Lactobacillus casei BL23]
 gi|327382424|gb|AEA53900.1| hypothetical protein LC2W_1567 [Lactobacillus casei LC2W]
 gi|327385624|gb|AEA57098.1| hypothetical protein LCBD_1601 [Lactobacillus casei BD-II]
          Length = 252

 Score =  155 bits (391), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 124/192 (64%), Gaps = 8/192 (4%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           E+ +W     VAG+DEVGRG LAGPVV AA+IL P++  + +NDSK+++  +R  LY  I
Sbjct: 60  ERQLWGTYEYVAGLDEVGRGPLAGPVVTAAVIL-PHHFQWPVNDSKQLTAHERNVLYPHI 118

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
            + AI + I  A ++ ID+ NI+ AT  A+  AV++L+V P   L+D   +P DLP +  
Sbjct: 119 LTEAIAVGIGVADNRTIDRENIYHATELAMAQAVDHLRVAPECLLVDAMHVPVDLPQKRL 178

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
             IKGD+ S+SIAAASI+AKV RDRLM +  K YP Y F  ++GY T  H   +   G +
Sbjct: 179 --IKGDANSISIAAASIVAKVIRDRLMMMYDKIYPGYDFKDNMGYGTKAHLAGLAAHGVT 236

Query: 195 CIHRLTFRPLRN 206
            IHR +F P+R+
Sbjct: 237 PIHRRSFGPVRD 248


>gi|86748206|ref|YP_484702.1| ribonuclease HII [Rhodopseudomonas palustris HaA2]
 gi|123293064|sp|Q2J169|RNH2_RHOP2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|86571234|gb|ABD05791.1| RNase HII [Rhodopseudomonas palustris HaA2]
          Length = 284

 Score =  155 bits (391), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 93/195 (47%), Positives = 128/195 (65%), Gaps = 1/195 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E  + ++ +WPVAG DE GRG LAGPVV AA++LDP  +P G++DSK++S +KRE
Sbjct: 57  PSFRRERALIKRGIWPVAGCDEAGRGPLAGPVVAAAVVLDPKRVPKGLDDSKRLSAEKRE 116

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           EL+E+I +SA +S++ AS + I++ NI +A+L A+  AV  L  +P+   +DGR      
Sbjct: 117 ELFEEICASAQVSVACASPERINRDNILRASLWALTRAVHALPDLPQHVFVDGRDRLATR 176

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C++ AVI GD +  SIAAASIIAKVTRDRLM    +  P YGF+ H GY   +H   + 
Sbjct: 177 -CESEAVIGGDGLIASIAAASIIAKVTRDRLMCRLAQDCPGYGFEQHKGYGVPEHLAALA 235

Query: 190 EKGPSCIHRLTFRPL 204
             GPS  HR  F P+
Sbjct: 236 RLGPSVHHRRFFAPV 250


>gi|227535118|ref|ZP_03965167.1| ribonuclease HII [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227187259|gb|EEI67326.1| ribonuclease HII [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 252

 Score =  155 bits (391), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 124/192 (64%), Gaps = 8/192 (4%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           E+ +W     VAG+DEVGRG LAGPVV AA+IL P++  + +NDSK+++  +R  LY  I
Sbjct: 60  ERQLWGTYEYVAGLDEVGRGPLAGPVVTAAVIL-PHHFQWPVNDSKQLTAHERNVLYPHI 118

Query: 76  TSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
            + AI+  I  A ++ ID+ NI+ AT  A+  AV++L+V P   L+D   +P DLP +  
Sbjct: 119 LTEAIVVGIGVADNRTIDRENIYHATELAMAQAVDHLRVAPECLLVDAMHVPVDLPQKRL 178

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
             IKGD+ S+SIAAASI+AKV RDRLM +  K YP Y F  ++GY T  H   +   G +
Sbjct: 179 --IKGDANSISIAAASIVAKVIRDRLMMMYDKIYPGYDFKDNMGYGTKAHLAGLAAHGVT 236

Query: 195 CIHRLTFRPLRN 206
            IHR +F P+R+
Sbjct: 237 PIHRRSFGPVRD 248


>gi|311280848|ref|YP_003943079.1| Ribonuclease H [Enterobacter cloacae SCF1]
 gi|308750043|gb|ADO49795.1| Ribonuclease H [Enterobacter cloacae SCF1]
          Length = 198

 Score =  155 bits (391), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 112/182 (61%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L+++I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALFDEIKEKALCWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P  LP  + AV+KGDS   
Sbjct: 72  RAEPHEIDELNILHATMLAMQRAVAGLHITPEYVLIDGNRCPA-LPVPSMAVVKGDSRVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E GP+  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMAELDVTFPQYGFAQHKGYPTAFHLEKLAEHGPTEQHRRSFGPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|304404228|ref|ZP_07385890.1| Ribonuclease H [Paenibacillus curdlanolyticus YK9]
 gi|304347206|gb|EFM13038.1| Ribonuclease H [Paenibacillus curdlanolyticus YK9]
          Length = 206

 Score =  155 bits (391), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 92/192 (47%), Positives = 119/192 (61%), Gaps = 4/192 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            E E ++ E+    +AGIDEVGRG L G VV AA+IL P  +  G+NDSKK+S KKR EL
Sbjct: 2   LEYEKLLWEQGCSNIAGIDEVGRGCLFGDVVAAAVILPPGLVLDGVNDSKKLSEKKRNEL 61

Query: 72  YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I   A+  SI+      ID+ NI +A+  A+  AV+ L V P   L+D   I  DLP
Sbjct: 62  YDIIIEHALYWSIARIDSDEIDRINIKQASRLAMKQAVQTLGVDPDHLLVDAEKIDLDLP 121

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK-YPDYGFDSHVGYPTAKHQQVIK 189
            Q  A+IKGD+ S SIAAASI+AKVTRDRL     +  YP YG   H GY T  H++ + 
Sbjct: 122 QQ--AIIKGDATSQSIAAASILAKVTRDRLCTTEWESLYPGYGIAIHKGYATKLHREKLL 179

Query: 190 EKGPSCIHRLTF 201
           E GP+ +HR +F
Sbjct: 180 ELGPTPLHRKSF 191


>gi|269138107|ref|YP_003294807.1| ribonuclease HII [Edwardsiella tarda EIB202]
 gi|267983767|gb|ACY83596.1| ribonuclease HII [Edwardsiella tarda EIB202]
 gi|304558151|gb|ADM40815.1| Ribonuclease HII [Edwardsiella tarda FL6-60]
          Length = 197

 Score =  155 bits (391), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 87/183 (47%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++I   A+  S+ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPARPIAGLADSKKLSEKRRCALYDEIVEKALCWSLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI +AT+ A+  AV  L + P   LIDG   P  LP  A AV+KGDS   
Sbjct: 73  RAEAEEIDRLNILQATMVAMQRAVAGLALPPDFVLIDGNRCPA-LPMAAQAVVKGDSRVA 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M    ++YP+YGF  H GYPTA H + +   G +  HR +F P+
Sbjct: 132 EISAASILAKVTRDREMAELDRQYPEYGFAQHKGYPTALHLERLAALGATEHHRRSFGPV 191

Query: 205 RNL 207
           + +
Sbjct: 192 KRV 194


>gi|296133539|ref|YP_003640786.1| Ribonuclease H [Thermincola sp. JR]
 gi|296032117|gb|ADG82885.1| Ribonuclease H [Thermincola potens JR]
          Length = 259

 Score =  154 bits (390), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 94/210 (44%), Positives = 129/210 (61%), Gaps = 11/210 (5%)

Query: 8   ERPHFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61
           E+    L A+++ E+ +W      VAGIDE GRG LAGPVV AA+IL   ++  G+NDSK
Sbjct: 52  EKEKERLNALLKYERELWAAGYTLVAGIDEAGRGPLAGPVVAAAVILKQGDLIEGLNDSK 111

Query: 62  KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K+S +KR EL E I   A+   I   S   ID+ NI++A L A+  AV  + + P   L+
Sbjct: 112 KLSPEKRSELEEVIKERAVAYGIGIVSETEIDEMNIYQAALKAMRIAVAKISLKPEYLLV 171

Query: 121 DGRSIPE-DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           D  +IP   +P +A  ++ GD++S SIAAASI+AK TRDR+M      YP YGF  H GY
Sbjct: 172 DAVTIPGVSIPQKA--IVHGDALSCSIAAASILAKETRDRIMTELDALYPHYGFAQHKGY 229

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLR-NLS 208
            TA H + +K+ GP  +HR TF  +R NL+
Sbjct: 230 ATAFHLEALKKYGPCPVHRKTFGQVRQNLT 259


>gi|227889894|ref|ZP_04007699.1| ribonuclease HII [Lactobacillus johnsonii ATCC 33200]
 gi|227849338|gb|EEJ59424.1| ribonuclease HII [Lactobacillus johnsonii ATCC 33200]
          Length = 250

 Score =  154 bits (390), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 87/190 (45%), Positives = 124/190 (65%), Gaps = 7/190 (3%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           EK  W     VAG+DEVGRG LAGPVV AA+IL  +     +NDSKK+S KKR+ L+ KI
Sbjct: 58  EKEFWQKDRLVAGVDEVGRGPLAGPVVTAAVILPHDFDLIDVNDSKKLSPKKRQALFPKI 117

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
              A+ +S+  A++  ID+ NI++A   A+ HAV+ L+V P + L+D  ++P ++P    
Sbjct: 118 LEKAVSVSVGLANNDVIDQINIYEADRVAMAHAVQGLKVKPDALLVDAMNVPLNIP--QV 175

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            +I GD+ S SIAAASI+AKV RD LM    + YP+Y F  + GY T +H + +K+ GP+
Sbjct: 176 KLIHGDAKSNSIAAASIVAKVFRDNLMDAYGELYPEYDFKHNAGYGTREHMEALKKYGPT 235

Query: 195 CIHRLTFRPL 204
            IHR +F P+
Sbjct: 236 PIHRRSFAPV 245


>gi|328946298|gb|EGG40442.1| ribonuclease HII [Streptococcus sanguinis SK1087]
          Length = 254

 Score =  154 bits (390), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 89/203 (43%), Positives = 129/203 (63%), Gaps = 9/203 (4%)

Query: 12  FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
             LE M+R EK ++      +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  
Sbjct: 52  LRLEQMLRYEKELYQAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKINGLNDSKKIPK 111

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KK +++Y+ +   A+ + I   + + ID+ NI++AT  A+  A+  L++     LID   
Sbjct: 112 KKHQDIYQAVMDKALAVGIGLMNSEIIDQVNIYEATKLAMKEALSKLRLKSDYLLIDAMK 171

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +  D+P ++  +IKGD+ SLSIAAASI+AKVTRD+LM    K++P Y F  + GY T  H
Sbjct: 172 LDVDIPQES--IIKGDANSLSIAAASIVAKVTRDKLMTDYDKEFPGYDFAQNAGYGTKSH 229

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
            Q ++  G + IHR TF P++++
Sbjct: 230 LQGLERHGVTPIHRKTFEPVKSM 252


>gi|293365454|ref|ZP_06612163.1| ribonuclease HII [Streptococcus oralis ATCC 35037]
 gi|291315822|gb|EFE56266.1| ribonuclease HII [Streptococcus oralis ATCC 35037]
          Length = 259

 Score =  154 bits (390), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 91/203 (44%), Positives = 126/203 (62%), Gaps = 9/203 (4%)

Query: 12  FELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
             LE M+  EK ++      +AG+DEVGRG LAGPVV AA+IL  N    G+NDSKKI  
Sbjct: 52  LRLETMLSYEKELYKQGLTLIAGVDEVGRGPLAGPVVAAAVILPKNCKIRGLNDSKKIPK 111

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KK  E+Y  +   A+ I I    +Q ID+ NI++AT  A+  A+  +   P   LID   
Sbjct: 112 KKHLEIYHAVQDQALAIGIGIMDNQVIDQVNIYEATKLAMKEAISQVSPKPEHLLIDAMK 171

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +   +P    A+IKGD+ SLSIAAASI+AKVTRD LM+   ++YP Y F ++ GY TAKH
Sbjct: 172 LELSIP--QTAIIKGDANSLSIAAASIVAKVTRDELMKEYDQQYPGYDFTANAGYGTAKH 229

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
            + +++ G + IHR +F P++ L
Sbjct: 230 LEGLEKLGVTPIHRTSFEPVKTL 252


>gi|170768530|ref|ZP_02902983.1| ribonuclease HII [Escherichia albertii TW07627]
 gi|170122634|gb|EDS91565.1| ribonuclease HII [Escherichia albertii TW07627]
          Length = 198

 Score =  154 bits (390), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 112/181 (61%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  LYE+I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEEIKEKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  + AV+KGDS   
Sbjct: 72  RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPVPSMAVVKGDSRVP 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      YP YGF  H GYPTA H + + E G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMAALDTVYPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGPV 190

Query: 205 R 205
           +
Sbjct: 191 K 191


>gi|27365221|ref|NP_760749.1| ribonuclease HII [Vibrio vulnificus CMCP6]
 gi|37680727|ref|NP_935336.1| ribonuclease HII [Vibrio vulnificus YJ016]
 gi|320155606|ref|YP_004187985.1| ribonuclease HII [Vibrio vulnificus MO6-24/O]
 gi|29611847|sp|Q8DBE7|RNH2_VIBVU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|39932256|sp|Q7MIH3|RNH2_VIBVY RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|27361368|gb|AAO10276.1| Ribonuclease HII [Vibrio vulnificus CMCP6]
 gi|37199476|dbj|BAC95307.1| ribonuclease HII [Vibrio vulnificus YJ016]
 gi|319930918|gb|ADV85782.1| ribonuclease HII [Vibrio vulnificus MO6-24/O]
          Length = 207

 Score =  154 bits (390), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 114/182 (62%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KKR  L  +I   A+  ++ 
Sbjct: 21  IAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIQEKALAWAVG 80

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S + ID+ NI +AT+ A+  AVE L V P   LIDG   P  LP  + AV+KGD    
Sbjct: 81  RCSPEEIDQLNILQATMVAMQRAVEGLAVKPDLVLIDGNRCPA-LPMDSQAVVKGDLRVA 139

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKV RD+ M    K+YP +GF  H GYPT  H   I++ G    HR +F+P+
Sbjct: 140 QISAASIIAKVVRDQEMEELDKQYPQFGFAQHKGYPTKAHFDAIEKHGVIEQHRKSFKPV 199

Query: 205 RN 206
           + 
Sbjct: 200 KK 201


>gi|307244937|ref|ZP_07527034.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307247112|ref|ZP_07529164.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|307253891|ref|ZP_07535743.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258345|ref|ZP_07540086.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306854102|gb|EFM86310.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306856361|gb|EFM88512.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|306863095|gb|EFM95037.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867529|gb|EFM99376.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 186

 Score =  154 bits (390), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 87/183 (47%), Positives = 117/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+IL PNN   G+ DSKK+S KKR  L E+I + A+  S+ 
Sbjct: 2   IAGVDEVGRGPLVGAVVTAAVILAPNNPIEGLADSKKLSEKKRLLLAEEIKAKALCWSLG 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L + P   L+DG  IP  LP  A AVIKGDS+  
Sbjct: 62  RAEPEEIDRLNILHATMLAMQRAVAGLNIQPDFVLVDGNRIP-TLPMPAQAVIKGDSLVA 120

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M     +YP+YGF  H GYPT  H + +++ G +  HR +F P+
Sbjct: 121 EISAASILAKVARDQEMAELDVQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKSFAPV 180

Query: 205 RNL 207
           + +
Sbjct: 181 KKI 183


>gi|114769695|ref|ZP_01447305.1| ribonuclease HII [alpha proteobacterium HTCC2255]
 gi|114549400|gb|EAU52282.1| ribonuclease HII [alpha proteobacterium HTCC2255]
          Length = 210

 Score =  154 bits (390), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 92/197 (46%), Positives = 126/197 (63%), Gaps = 1/197 (0%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           ++ +E  +R      + G+DEVGRG  AGPV   A+ILDP NIP G+NDSKK++ K+R +
Sbjct: 7   NYNIENSLRPNGNEVIMGVDEVGRGPWAGPVTACAVILDPENIPPGLNDSKKLNVKQRTK 66

Query: 71  LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           L+E I +S+++S        IDK NI +AT  A+  ++  L  IP   LIDG  +P +LP
Sbjct: 67  LFEDIMNSSLVSCVHVDVGEIDKINILQATFRAMERSISKLP-IPDHILIDGNKLPPNLP 125

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             A A+IKGDS S SIAAASIIAKVTRDRLM     +YP YG++ + GY T  HQ  +  
Sbjct: 126 SPATAIIKGDSKSASIAAASIIAKVTRDRLMADLSVEYPGYGWEKNAGYGTKMHQSGLLN 185

Query: 191 KGPSCIHRLTFRPLRNL 207
            G +  HR +F+P+ N+
Sbjct: 186 NGVTPHHRRSFKPIHNM 202


>gi|301155660|emb|CBW15128.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Haemophilus
           parainfluenzae T3T1]
          Length = 200

 Score =  154 bits (390), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 85/181 (46%), Positives = 114/181 (62%), Gaps = 1/181 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85
           AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L  +I   A+  ++  
Sbjct: 14  AGVDEVGRGPLVGAVVTAAVILDPNNPIAGLADSKKLSEKKRLALAAEIKEKALAWAMGR 73

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A    ID+ NI  A++ A+  AV+ L++ P   L+DG  IP +L   A AV+KGDS+   
Sbjct: 74  AEPAEIDELNILHASMLAMERAVKALEIQPHFVLVDGNRIPPNLSLPAQAVVKGDSLVAE 133

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AKV RD+ M    KKYP+Y F  H GYPT  H + + E GP   +R +F P++
Sbjct: 134 ISAASILAKVARDQEMEELDKKYPEYAFAQHKGYPTKLHLEKLAELGPLPEYRRSFSPVK 193

Query: 206 N 206
            
Sbjct: 194 K 194


>gi|319897459|ref|YP_004135656.1| ribonuclease hii, degrades RNA of DNA-RNA hybrids [Haemophilus
           influenzae F3031]
 gi|317432965|emb|CBY81332.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Haemophilus
           influenzae F3031]
          Length = 197

 Score =  154 bits (390), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 85/182 (46%), Positives = 117/182 (64%), Gaps = 1/182 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L E+I   A+  ++ 
Sbjct: 11  IAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKALAWALG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI +A+L A+  AV++L++ P   L+DG  IP+ L   A A++KGDSI  
Sbjct: 71  RAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKYLDIPAQAIVKGDSIVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR +F P+
Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRRSFAPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KK 192


>gi|46143677|ref|ZP_00134750.2| COG0164: Ribonuclease HII [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|126207617|ref|YP_001052842.1| ribonuclease HII [Actinobacillus pleuropneumoniae L20]
 gi|303251953|ref|ZP_07338124.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|166225164|sp|A3MYK1|RNH2_ACTP2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|126096409|gb|ABN73237.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
 gi|302649383|gb|EFL79568.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
          Length = 197

 Score =  154 bits (390), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 87/183 (47%), Positives = 117/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+IL PNN   G+ DSKK+S KKR  L E+I + A+  S+ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILAPNNPIEGLADSKKLSEKKRLLLAEEIKAKALCWSLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L + P   L+DG  IP  LP  A AVIKGDS+  
Sbjct: 73  RAEPEEIDRLNILHATMLAMQRAVAGLNIQPDFVLVDGNRIP-TLPMPAQAVIKGDSLVA 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M     +YP+YGF  H GYPT  H + +++ G +  HR +F P+
Sbjct: 132 EISAASILAKVARDQEMAELDVQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKSFAPV 191

Query: 205 RNL 207
           + +
Sbjct: 192 KKI 194


>gi|329850294|ref|ZP_08265139.1| ribonuclease HII family protein [Asticcacaulis biprosthecum C19]
 gi|328840609|gb|EGF90180.1| ribonuclease HII family protein [Asticcacaulis biprosthecum C19]
          Length = 204

 Score =  154 bits (390), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 87/185 (47%), Positives = 112/185 (60%), Gaps = 1/185 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           V G+DE GRG  AGP+ VAA+ILDP   P GI+DSK ++  +R +L   I  +AI  S+ 
Sbjct: 14  VCGVDEAGRGPCAGPLCVAAVILDPARTPEGIDDSKALTEARRFQLEPLIKHAAIAWSVI 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           + S   ID  NI  ATL+ +  AV  L      ALIDG   P+ L   A AVI GD++SL
Sbjct: 74  TMSTDDIDSMNILAATLEGMSRAVMALNPNAHHALIDGNRCPKQLSISATAVIGGDALSL 133

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASI+AK  RDR+M      YP YGF  H GY T  H + ++  GPS +HR ++  L
Sbjct: 134 SIAAASILAKTARDRIMIELDAVYPQYGFKRHKGYQTGAHLEALRVHGPSPVHRKSWATL 193

Query: 205 RNLSV 209
           R LS+
Sbjct: 194 RQLSL 198


>gi|258645842|ref|ZP_05733311.1| ribonuclease HII [Dialister invisus DSM 15470]
 gi|260403214|gb|EEW96761.1| ribonuclease HII [Dialister invisus DSM 15470]
          Length = 256

 Score =  154 bits (390), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 91/197 (46%), Positives = 136/197 (69%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +E E+   +K +  VAGIDEVGRG LAGPV VAA+IL P+    G+NDSKK++ ++REE+
Sbjct: 56  YEPESSFYKKGLEYVAGIDEVGRGPLAGPVTVAAVILKPHFFIAGLNDSKKVAPRRREEI 115

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            +KI  +A+ ISI S S + ID  NI+ AT++A+Y AV NL++ P++ ++D  ++P   P
Sbjct: 116 AKKIHETAVDISIVSLSPEEIDMRNIYAATMEAMYRAVRNLKIQPQAVIVD--AMPLHFP 173

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             + +++ GD+ S S+AAASI+AKV RD LM    K YP YGF  + GY TA+H + I+ 
Sbjct: 174 VPSLSLVHGDAKSASVAAASIVAKVHRDHLMDEYDKVYPGYGFSQNKGYGTAEHIEAIRT 233

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR +F P++++
Sbjct: 234 LGITPIHRKSFEPVKSM 250


>gi|16759220|ref|NP_454837.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|16763620|ref|NP_459235.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29140770|ref|NP_804112.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56412503|ref|YP_149578.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|167990117|ref|ZP_02571217.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168230539|ref|ZP_02655597.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168244998|ref|ZP_02669930.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|194442556|ref|YP_002039470.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194447841|ref|YP_002044220.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194469389|ref|ZP_03075373.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|197262827|ref|ZP_03162901.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197361438|ref|YP_002141074.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|198243184|ref|YP_002214191.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|200388767|ref|ZP_03215379.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|207855748|ref|YP_002242399.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213163685|ref|ZP_03349395.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
 gi|213418465|ref|ZP_03351531.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
 gi|213425956|ref|ZP_03358706.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213580323|ref|ZP_03362149.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
 gi|213648458|ref|ZP_03378511.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
 gi|238911296|ref|ZP_04655133.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289825702|ref|ZP_06544870.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|61234136|sp|P0A2C1|RNH2_SALTY RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|61234141|sp|P0A2C2|RNH2_SALTI RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|73917833|sp|Q5PD71|RNH2_SALPA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238689913|sp|B5BAP0|RNH2_SALPK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238690313|sp|B5FJ30|RNH2_SALDC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238690458|sp|B5R422|RNH2_SALEP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238690680|sp|B4TK58|RNH2_SALHS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238693524|sp|B4SV12|RNH2_SALNS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|25289252|pir||AH0530 ribonuclease HII [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16418735|gb|AAL19194.1| RNAse HII [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16501511|emb|CAD08688.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29136394|gb|AAO67961.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56126760|gb|AAV76266.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|194401219|gb|ACF61441.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194406145|gb|ACF66364.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194455753|gb|EDX44592.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|197092914|emb|CAR58343.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197241082|gb|EDY23702.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197937700|gb|ACH75033.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199605865|gb|EDZ04410.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205331449|gb|EDZ18213.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205335176|gb|EDZ21940.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205336201|gb|EDZ22965.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|206707551|emb|CAR31825.1| Ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|261245462|emb|CBG23252.1| RNase HII [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|267991921|gb|ACY86806.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301156857|emb|CBW16333.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312911200|dbj|BAJ35174.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321222186|gb|EFX47258.1| Ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323128550|gb|ADX15980.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|326621934|gb|EGE28279.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
 gi|332987182|gb|AEF06165.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 198

 Score =  154 bits (390), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 112/182 (61%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  LY++I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLSLYDEIKEKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   PE LP  + AV+KGDS   
Sbjct: 72  RAEAHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPE-LPVPSMAVVKGDSRVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + + G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAQYGATAHHRRSFAPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|227326550|ref|ZP_03830574.1| ribonuclease HII [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 198

 Score =  154 bits (390), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 85/182 (46%), Positives = 114/182 (62%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSK++S K+R  LY++I   A+  S+ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPTRPIVGLADSKQLSEKRRLSLYDEIKEKALAWSLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L ++P   LIDG   P  LP  A AV+KGDS   
Sbjct: 73  RAEPEEIDQLNILHATMLAMQRAVAGLAIVPDFVLIDGNRCPA-LPMSAQAVVKGDSRVA 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M    +++P YGF  H GYPTA H + +   G +  HR +F P+
Sbjct: 132 EISAASIMAKVTRDREMVELDQRFPAYGFAQHKGYPTAFHLEKLAALGATEFHRRSFAPV 191

Query: 205 RN 206
           + 
Sbjct: 192 KR 193


>gi|315179359|gb|ADT86273.1| ribonuclease HII [Vibrio furnissii NCTC 11218]
          Length = 206

 Score =  154 bits (390), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 88/183 (48%), Positives = 115/183 (62%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPN+   G+NDSKK+S KKR  L  +I   A+  S+ 
Sbjct: 21  IAGVDEVGRGPLVGDVVTAAVILDPNHPIEGLNDSKKLSEKKRLALLPEIQQKALAWSVG 80

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S Q ID+ NI +AT+ A+  AV+ L + P   L+DG  IP  LP  A AV+KGD    
Sbjct: 81  RCSPQEIDELNIFQATMLAMQRAVDGLAIKPDLVLVDGNKIP-SLPMDAQAVVKGDLRVA 139

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKV RD+ M    K YP +GF  H GYPT  H + I++ G    HR +F P+
Sbjct: 140 QISAASIIAKVVRDQEMEELDKVYPQFGFAKHKGYPTKAHFEAIEQHGVIDQHRRSFGPV 199

Query: 205 RNL 207
           + +
Sbjct: 200 KRV 202


>gi|149374423|ref|ZP_01892197.1| ribonuclease HII [Marinobacter algicola DG893]
 gi|149361126|gb|EDM49576.1| ribonuclease HII [Marinobacter algicola DG893]
          Length = 225

 Score =  154 bits (390), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 84/182 (46%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS-SAIISIS 84
           +AG+DEVGRG L G VV AA+IL+P     G+ DSKK++ K+RE LYE+I   +A  S+ 
Sbjct: 18  LAGVDEVGRGPLVGAVVTAAVILNPERPIPGLADSKKLTDKRREALYEQIIERAASWSLG 77

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
                 ID+ NI +AT+ A+  AV  L V P   L+DG   P      +  V+KGDS   
Sbjct: 78  RCEADEIDRLNIFQATMVAMERAVAGLHVEPEYVLVDGNRCPR-WRWASEPVVKGDSRVE 136

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASIIAKVTRDR M + H+++P+YGF SH GYPT  H + +   G +  HR +FRP+
Sbjct: 137 AISAASIIAKVTRDREMAVLHEEFPEYGFASHKGYPTPVHLEALGRLGATAYHRRSFRPV 196

Query: 205 RN 206
           + 
Sbjct: 197 QE 198


>gi|325262275|ref|ZP_08129012.1| ribonuclease HII [Clostridium sp. D5]
 gi|324032107|gb|EGB93385.1| ribonuclease HII [Clostridium sp. D5]
          Length = 254

 Score =  154 bits (389), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 94/196 (47%), Positives = 122/196 (62%), Gaps = 6/196 (3%)

Query: 11  HFELEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
              LE M R +  +     + GIDEVGRG LAGPVV  A+IL  +     INDSKK+S K
Sbjct: 53  RLRLEQMKRYEKKYDEHTFICGIDEVGRGPLAGPVVAGAVILPKDCEILYINDSKKLSAK 112

Query: 67  KREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           KREELY++I   A+ + I  AS   IDK NI +AT +A+  AV+ L+  P   L D  +I
Sbjct: 113 KREELYDEIMDKAVATGIGMASPARIDKINILQATYEAMRIAVQELKTAPTLLLNDAVTI 172

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  +      +IKGD+ S+SIAAASIIAKVTRDRLM    K  P YGF  + GY +A H 
Sbjct: 173 P-GITLPQVPIIKGDAKSVSIAAASIIAKVTRDRLMLEYDKILPGYGFAENKGYGSAAHI 231

Query: 186 QVIKEKGPSCIHRLTF 201
           + +K+ GP+ IHR++F
Sbjct: 232 EALKKMGPTPIHRVSF 247


>gi|296101352|ref|YP_003611498.1| ribonuclease HII [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055811|gb|ADF60549.1| ribonuclease HII [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 198

 Score =  154 bits (389), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 112/182 (61%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L+++I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIIGLNDSKKLSEKRRLALFDEIQEKALAWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L++ P   LIDG   P  LP  + AV+KGDS   
Sbjct: 72  RAEPHEIDELNILHATMLAMQRAVAGLKIAPEYVLIDGNRCPA-LPVPSMAVVKGDSRVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKVTRD  M      YP YGF  H GYPTA H + + E G +  HR +F P+
Sbjct: 131 EISAASIIAKVTRDAEMAALDLTYPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|153874551|ref|ZP_02002729.1| Ribonuclease HII [Beggiatoa sp. PS]
 gi|152068988|gb|EDN67274.1| Ribonuclease HII [Beggiatoa sp. PS]
          Length = 197

 Score =  154 bits (389), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 82/183 (44%), Positives = 118/183 (64%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG LAGPV+ AA+ILD  +   G+ DSK +S K+RE L ++I   A+  ++ 
Sbjct: 10  IAGVDEVGRGPLAGPVIAAAVILDEAHPIVGLADSKTLSEKRREALAKEIRQRALAYALG 69

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID  NI +A+L A+  AV+NL ++P   L+DG+  P+ L C   A+I+GD    
Sbjct: 70  RAEVEEIDHINILQASLLAMQRAVKNLPIVPEHVLVDGKFCPQ-LDCSVEAIIQGDKKVQ 128

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD  MR     YP YGF +H GYPT  H++ ++  G + IHR +F P+
Sbjct: 129 VISAASILAKVVRDEEMREMDHLYPGYGFAAHKGYPTRAHREALQRLGATVIHRRSFAPV 188

Query: 205 RNL 207
           R +
Sbjct: 189 RQV 191


>gi|53719754|ref|YP_108740.1| ribonuclease HII [Burkholderia pseudomallei K96243]
 gi|126441923|ref|YP_001059454.1| ribonuclease HII [Burkholderia pseudomallei 668]
 gi|237812793|ref|YP_002897244.1| ribonuclease HII [Burkholderia pseudomallei MSHR346]
 gi|254197441|ref|ZP_04903863.1| ribonuclease HII [Burkholderia pseudomallei S13]
 gi|81379508|sp|Q63T26|RNH2_BURPS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166225177|sp|A3NAT3|RNH2_BURP6 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|52210168|emb|CAH36147.1| ribonuclease HII [Burkholderia pseudomallei K96243]
 gi|126221416|gb|ABN84922.1| ribonuclease HII [Burkholderia pseudomallei 668]
 gi|169654182|gb|EDS86875.1| ribonuclease HII [Burkholderia pseudomallei S13]
 gi|237504589|gb|ACQ96907.1| ribonuclease HII [Burkholderia pseudomallei MSHR346]
          Length = 214

 Score =  154 bits (389), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 123/182 (67%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           V G+DE GRG LAGPVV AA++LDP     G++DSK +S KKRE L+++I   A+  S++
Sbjct: 28  VCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVVHALAYSVA 87

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS + ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  ++ A++ GD++  
Sbjct: 88  SASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM-LAIRSEAIVGGDALVP 146

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI+AASI+AKVTRDR++   H+++P YGFD+H GY T +H   ++E GP   HR +F P+
Sbjct: 147 SISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAPV 206

Query: 205 RN 206
           R 
Sbjct: 207 RE 208


>gi|300715410|ref|YP_003740213.1| ribonuclease HII [Erwinia billingiae Eb661]
 gi|299061246|emb|CAX58355.1| Ribonuclease HII [Erwinia billingiae Eb661]
          Length = 207

 Score =  154 bits (389), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 113/182 (62%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++I   A+  S+ 
Sbjct: 12  IAGVDEVGRGPLVGAVVTAAVILDPARPIVGLADSKKLSEKRRLALYDEIVEKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L + P   LIDG   P  L   + AV+KGDS+  
Sbjct: 72  RAEPEEIDRLNILHATMLAMQRAVAGLHICPDFVLIDGNRCPA-LAMPSLAVVKGDSLVR 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKVTRDR M      +P YGF  H GYPTA H + + + G +  HR +F P+
Sbjct: 131 EISAASIIAKVTRDREMSELDVLFPQYGFAQHKGYPTALHMEKLAQHGVTPHHRRSFAPV 190

Query: 205 RN 206
           RN
Sbjct: 191 RN 192


>gi|333011022|gb|EGK30441.1| ribonuclease HII family protein [Shigella flexneri K-272]
 gi|333021817|gb|EGK41066.1| ribonuclease HII family protein [Shigella flexneri K-227]
          Length = 198

 Score =  154 bits (389), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 90/186 (48%), Positives = 114/186 (61%), Gaps = 2/186 (1%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
           +M  VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  LYE+I   A+ 
Sbjct: 8   HMQLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEEIKEKALS 67

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            S+  A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  A AV+KGD
Sbjct: 68  WSLGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMAVVKGD 126

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S    I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +
Sbjct: 127 SRVPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRS 186

Query: 201 FRPLRN 206
           F P++ 
Sbjct: 187 FGPVKR 192


>gi|115380723|ref|ZP_01467629.1| ribonuclease HII [Stigmatella aurantiaca DW4/3-1]
 gi|310820560|ref|YP_003952918.1| ribonuclease hII [Stigmatella aurantiaca DW4/3-1]
 gi|115362268|gb|EAU61597.1| ribonuclease HII [Stigmatella aurantiaca DW4/3-1]
 gi|309393632|gb|ADO71091.1| Ribonuclease HII [Stigmatella aurantiaca DW4/3-1]
          Length = 282

 Score =  154 bits (389), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 87/197 (44%), Positives = 120/197 (60%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI-SHKKREE 70
              E  + E+ +  VAG+DE G   LAGPVV AA IL  N    G++DSKKI   ++REE
Sbjct: 67  LRYETELWEQGLERVAGVDEAGMAPLAGPVVAAAAILPRNYRLKGLDDSKKILDAERREE 126

Query: 71  LYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L   +   A+  ++  A  + ID+ NI+ A L A+  AV  L + P  AL+D R IPE  
Sbjct: 127 LAAALKRDAVAWAVGIAEVEEIDRLNIYHAGLLAMRRAVLGLGLTPDYALVDARKIPE-C 185

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           PC    +I+GD++S+SIAAAS++AK +RDR+M     +YP YG   H GYPT +H Q ++
Sbjct: 186 PCPQRGIIRGDALSMSIAAASVLAKTSRDRMMGELDARYPGYGLAVHKGYPTPQHVQALR 245

Query: 190 EKGPSCIHRLTFRPLRN 206
           EKG   IHR +F P+R 
Sbjct: 246 EKGVLPIHRRSFGPVRE 262


>gi|23098995|ref|NP_692461.1| ribonuclease H [Oceanobacillus iheyensis HTE831]
 gi|39932410|sp|Q8EQZ4|RNH2_OCEIH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|22777223|dbj|BAC13496.1| ribonuclease H [Oceanobacillus iheyensis HTE831]
          Length = 261

 Score =  154 bits (389), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 94/195 (48%), Positives = 124/195 (63%), Gaps = 6/195 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +E EA  R  N + +AG+DEVGRG LAGPVV AA+IL  +    GINDSKK+S  +R E 
Sbjct: 61  YEKEAY-RNGNHY-IAGVDEVGRGPLAGPVVAAAVILPKDFQLLGINDSKKLSEVQRNEF 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-EDL 129
              I   AI   IS   +  IDK NI++A+  A+  A+  LQ  P  ALID  ++P E L
Sbjct: 119 SHYIKQHAIAYQISFIDNTIIDKINIYEASKQAMKEAISGLQPYPDHALID--AVPLEGL 176

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C   A+IKGD+ S+ IAAAS++AKV RD  M+  H+KYP YGF+S++GY T +H Q I+
Sbjct: 177 NCTYEAIIKGDAESVHIAAASVLAKVARDDWMKELHEKYPLYGFNSNMGYGTKEHLQAIE 236

Query: 190 EKGPSCIHRLTFRPL 204
             G +  HR +F PL
Sbjct: 237 TYGVTPYHRYSFAPL 251


>gi|300113760|ref|YP_003760335.1| ribonuclease H [Nitrosococcus watsonii C-113]
 gi|299539697|gb|ADJ28014.1| Ribonuclease H [Nitrosococcus watsonii C-113]
          Length = 195

 Score =  154 bits (389), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 82/183 (44%), Positives = 110/183 (60%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG LAGPV+  A+ILDP     G+ DSK+++   RE L   I   AI  ++ 
Sbjct: 10  IAGVDEVGRGPLAGPVIAGAVILDPERPISGVKDSKQLTAPARERLAALIQVQAIAWALG 69

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI +A+L A+  A+  L V+P   L+DGR  P  + C   A++KGD   +
Sbjct: 70  RAEAVEIDQLNIFQASLLAMERAIAALSVVPDLVLVDGRHCPLTV-CPVRAIVKGDQRVM 128

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I AASI+AKV RD  M    + YP YGF +H GYPT  H   +K  GP  IHR +FRP+
Sbjct: 129 AIGAASIVAKVARDAEMIAFEESYPGYGFGTHKGYPTRAHLAALKALGPCSIHRRSFRPV 188

Query: 205 RNL 207
           R  
Sbjct: 189 RRF 191


>gi|219871844|ref|YP_002476219.1| ribonuclease HII [Haemophilus parasuis SH0165]
 gi|219692048|gb|ACL33271.1| ribonuclease HII [Haemophilus parasuis SH0165]
          Length = 195

 Score =  154 bits (389), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 86/180 (47%), Positives = 115/180 (63%), Gaps = 2/180 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPN    G+ DSKK+S K+R  L E+I + A+  S+ 
Sbjct: 10  IAGVDEVGRGPLVGAVVTAAVILDPNQPIEGLADSKKLSEKRRLALAEEIKAKALCWSLG 69

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L++ P   L+DG  IP  LP  A AV+KGDS+  
Sbjct: 70  RAEPDEIDQLNIFHATMLAMQRAVAGLRIQPDFVLVDGNRIP-TLPMPAQAVVKGDSLVA 128

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M    K+YP+YGF  H GYPT  H + ++  G +  HR +F P+
Sbjct: 129 EISAASILAKVARDQEMDELDKQYPEYGFAQHKGYPTKLHFEKLESLGVTPYHRKSFAPV 188


>gi|331266372|ref|YP_004326002.1| ribonuclease HII [Streptococcus oralis Uo5]
 gi|326683044|emb|CBZ00661.1| ribonuclease HII [Streptococcus oralis Uo5]
          Length = 259

 Score =  154 bits (389), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 91/203 (44%), Positives = 125/203 (61%), Gaps = 9/203 (4%)

Query: 12  FELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
             LE M+  EK ++      +AG+DEVGRG LAGPVV AA+IL       G+NDSKKI  
Sbjct: 52  LRLETMLSYEKELYKQGLSLIAGVDEVGRGPLAGPVVAAAVILPKKCKIKGLNDSKKIPK 111

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KK  E+Y  +   A+ I I    ++ ID+ NI++AT  A+  A+  L   P   LID   
Sbjct: 112 KKHLEIYHAVQDQALAIGIGIMDNEVIDQVNIYEATKLAMKEAISQLSPQPEHLLIDAMK 171

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +  +LP    A+IKGD+ SLSIAAASI+AKVTRD LM+    +YP Y F ++ GY TAKH
Sbjct: 172 L--ELPILQTAIIKGDANSLSIAAASIVAKVTRDELMKEYDNQYPGYDFTANAGYGTAKH 229

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
            + +++ G + IHR +F P++ L
Sbjct: 230 LEGLEKLGVTPIHRTSFEPVKTL 252


>gi|303258069|ref|ZP_07344077.1| ribonuclease HII [Burkholderiales bacterium 1_1_47]
 gi|330998718|ref|ZP_08322447.1| ribonuclease HII [Parasutterella excrementihominis YIT 11859]
 gi|302859088|gb|EFL82171.1| ribonuclease HII [Burkholderiales bacterium 1_1_47]
 gi|329576457|gb|EGG57969.1| ribonuclease HII [Parasutterella excrementihominis YIT 11859]
          Length = 213

 Score =  154 bits (389), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 83/180 (46%), Positives = 119/180 (66%), Gaps = 2/180 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           V G+DE GRG LAGPVV AA+IL+P++   G+ DSKK++   RE L E+I + A+  +I+
Sbjct: 16  VCGVDEAGRGPLAGPVVAAAVILNPDHPIEGLRDSKKLTAHAREVLAEQIKTHALAWAIA 75

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            +S   ID+ NI +AT+ A+  AV  L   P   L+DG  +PE LP +A  ++KGD +  
Sbjct: 76  ESSVADIDRMNILQATMAAMRKAVLQLDPKPDLVLVDGNRLPE-LPFRAEPIVKGDDLIP 134

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AK  RD LM+I    YP YGF+ H GY TA H +++++ GP  +HR+TF P+
Sbjct: 135 EISAASILAKTYRDALMKILGGMYPKYGFEQHAGYGTAHHLKMLEKWGPCPVHRMTFGPV 194


>gi|256003759|ref|ZP_05428747.1| Ribonuclease H [Clostridium thermocellum DSM 2360]
 gi|281417482|ref|ZP_06248502.1| Ribonuclease H [Clostridium thermocellum JW20]
 gi|255992320|gb|EEU02414.1| Ribonuclease H [Clostridium thermocellum DSM 2360]
 gi|281408884|gb|EFB39142.1| Ribonuclease H [Clostridium thermocellum JW20]
 gi|316940489|gb|ADU74523.1| Ribonuclease H [Clostridium thermocellum DSM 1313]
          Length = 261

 Score =  154 bits (389), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 89/194 (45%), Positives = 123/194 (63%), Gaps = 7/194 (3%)

Query: 14  LEAMVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           LE  + EK  +      +AGIDE GRG LAGPVV AA+IL  +    G+NDSKK++  +R
Sbjct: 63  LEMCIYEKEAYQRGYKLIAGIDEAGRGPLAGPVVAAAVILPQDVFIEGLNDSKKLTENQR 122

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E+L++ I   AI + I     + ID+ NI  AT  A+  AV NL+ +P    ID   + +
Sbjct: 123 EKLFDVINDKAIGVGIGIVDEKQIDEINILNATKKAMKLAVGNLKPVPDILFIDSLKL-D 181

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           D+  +  +++KGD+ S+SIAAASIIAKVTRDR++R   KKYP YGF  H GY T +H + 
Sbjct: 182 DINIEQNSIVKGDAKSVSIAAASIIAKVTRDRILREMDKKYPMYGFARHKGYGTGEHIEA 241

Query: 188 IKEKGPSCIHRLTF 201
           IK+ G   IHR++F
Sbjct: 242 IKKYGICPIHRVSF 255


>gi|320540045|ref|ZP_08039701.1| putative ribonuclease HII, degrades RNA of DNA-RNA hybrids
           [Serratia symbiotica str. Tucson]
 gi|320029894|gb|EFW11917.1| putative ribonuclease HII, degrades RNA of DNA-RNA hybrids
           [Serratia symbiotica str. Tucson]
          Length = 197

 Score =  154 bits (389), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 87/183 (47%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LYE+I + A+  S+ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPAQPIVGLADSKKLSEKRRLALYEEIIAKALSWSLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L ++P   LIDG   P  LP ++ AV+KGDS   
Sbjct: 73  RAEPEEIDRLNILHATMLAMQRAVAGLPIVPDMVLIDGNRCP-TLPMRSQAVVKGDSRVA 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M    + +P YGF  H GYPTA H + +   G +  HR +F P+
Sbjct: 132 EISAASILAKVTRDREMIELDRVFPGYGFAQHKGYPTAFHLEQLAVLGATEHHRRSFAPV 191

Query: 205 RNL 207
           R +
Sbjct: 192 RRV 194


>gi|52080208|ref|YP_078999.1| ribonuclease HII [Bacillus licheniformis ATCC 14580]
 gi|52785585|ref|YP_091414.1| ribonuclease HII [Bacillus licheniformis ATCC 14580]
 gi|319646013|ref|ZP_08000243.1| ribonuclease HII [Bacillus sp. BT1B_CT2]
 gi|73917597|sp|Q65JP3|RNH2_BACLD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|52003419|gb|AAU23361.1| ribonuclease HII [Bacillus licheniformis ATCC 14580]
 gi|52348087|gb|AAU40721.1| RnhB [Bacillus licheniformis ATCC 14580]
 gi|317391763|gb|EFV72560.1| ribonuclease HII [Bacillus sp. BT1B_CT2]
          Length = 255

 Score =  154 bits (389), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 87/193 (45%), Positives = 119/193 (61%), Gaps = 3/193 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +R +    +AGIDE GRG LAGPVV AA+IL  +    G+ DSKK+S +KRE+ Y 
Sbjct: 62  FERSLRARGYQYIAGIDEAGRGPLAGPVVAAAVILKEDCEILGLTDSKKLSKQKREDYYS 121

Query: 74  KITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   +A + +  A    ID+ NI++A+  A+  AV+ L V P   LID  S+  D   +
Sbjct: 122 YIMEEAAAVGVGIADAHEIDELNIYEASKAAMLKAVQALDVAPDYLLIDAMSLAVD--TE 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S SIAA + IAKVTRDRLM    +KYP YGF+ H GY T +H   + + G
Sbjct: 180 QSSIIKGDAKSASIAAGACIAKVTRDRLMDEYAEKYPLYGFEKHKGYGTKEHLNALAKYG 239

Query: 193 PSCIHRLTFRPLR 205
           PS IHR +F P++
Sbjct: 240 PSPIHRRSFAPVK 252


>gi|76809916|ref|YP_333960.1| ribonuclease HII [Burkholderia pseudomallei 1710b]
 gi|254189278|ref|ZP_04895789.1| ribonuclease HII [Burkholderia pseudomallei Pasteur 52237]
 gi|254259229|ref|ZP_04950283.1| ribonuclease HII [Burkholderia pseudomallei 1710a]
 gi|97182323|sp|Q3JR43|RNH2_BURP1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|76579369|gb|ABA48844.1| ribonuclease HII [Burkholderia pseudomallei 1710b]
 gi|157936957|gb|EDO92627.1| ribonuclease HII [Burkholderia pseudomallei Pasteur 52237]
 gi|254217918|gb|EET07302.1| ribonuclease HII [Burkholderia pseudomallei 1710a]
          Length = 214

 Score =  154 bits (389), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 123/182 (67%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           V G+DE GRG LAGPVV AA++LDP     G++DSK +S KKRE L+++I + A+  S++
Sbjct: 28  VCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAHALAYSVA 87

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS + ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  ++ A++ GD++  
Sbjct: 88  SASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM-LAIRSEAIVGGDALVP 146

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI+AASI+AKVTRDR +   H+++P YGFD+H GY T +H   ++E GP   HR +F P+
Sbjct: 147 SISAASILAKVTRDRTLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAPV 206

Query: 205 RN 206
           R 
Sbjct: 207 RE 208


>gi|154686022|ref|YP_001421183.1| ribonuclease HII [Bacillus amyloliquefaciens FZB42]
 gi|166225167|sp|A7Z4M6|RNH2_BACA2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|154351873|gb|ABS73952.1| RnhB [Bacillus amyloliquefaciens FZB42]
          Length = 255

 Score =  154 bits (389), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 85/193 (44%), Positives = 118/193 (61%), Gaps = 3/193 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E +  +K    +AG+DE GRG LAGPVV  A+IL       G+ DSKK+S KK EE Y +
Sbjct: 63  ERLSSKKGFRLIAGVDEAGRGPLAGPVVAGAVILPAECEILGLTDSKKLSEKKLEEYYSR 122

Query: 75  ITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           IT  +A + +       ID+ NI++A   A+  AV  L   P   L+D  ++P D+P   
Sbjct: 123 ITEEAAAVGVGIVHADVIDRINIYEAARLAMVKAVNALTETPDYLLVDAMTLPLDIP--Q 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            +VIKGD+ S+SIAA + IAKVTRDRLM    K YP YGF+ + GY T +H + ++  GP
Sbjct: 181 SSVIKGDAKSVSIAAGACIAKVTRDRLMAEYAKTYPMYGFEKNKGYGTKEHLEALQAYGP 240

Query: 194 SCIHRLTFRPLRN 206
           + IHR TF P+++
Sbjct: 241 TTIHRKTFAPVQS 253


>gi|295098672|emb|CBK87762.1| RNase HII [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 198

 Score =  154 bits (389), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 112/182 (61%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L+++I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALFDEIKEKALAWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID  NI  AT+ A+  AV  L+++P   LIDG   P  LP  + AV+KGDS   
Sbjct: 72  RAEPDEIDDLNILHATMLAMQRAVAGLKIVPEYVLIDGNRCPA-LPMPSMAVVKGDSRVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKVTRD  M      YP YGF  H GYPTA H + + E G +  HR +F P+
Sbjct: 131 EISAASIIAKVTRDAEMAALDLTYPAYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|152968777|ref|YP_001333886.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238893179|ref|YP_002917913.1| ribonuclease HII [Klebsiella pneumoniae NTUH-K2044]
 gi|262044746|ref|ZP_06017793.1| ribonuclease HII [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|330001662|ref|ZP_08304088.1| ribonuclease HII [Klebsiella sp. MS 92-3]
 gi|166225193|sp|A6T4Y5|RNH2_KLEP7 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|150953626|gb|ABR75656.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238545495|dbj|BAH61846.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259037896|gb|EEW39120.1| ribonuclease HII [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|328537604|gb|EGF63824.1| ribonuclease HII [Klebsiella sp. MS 92-3]
          Length = 199

 Score =  154 bits (389), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 87/181 (48%), Positives = 113/181 (62%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L+++I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPAKPIVGLNDSKKLSEKRRLALFDEIKEKALCWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L ++P   LIDG   P  LP  + AV+KGDS   
Sbjct: 72  RAEPHEIDELNILHATMLAMQRAVAGLSIVPEFVLIDGNRCP-SLPMPSQAVVKGDSRVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H Q ++E G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMATLDLAFPHYGFAQHKGYPTAVHLQKLQEHGATEHHRRSFGPV 190

Query: 205 R 205
           +
Sbjct: 191 K 191


>gi|324994471|gb|EGC26384.1| ribonuclease HII [Streptococcus sanguinis SK678]
          Length = 254

 Score =  154 bits (389), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 91/204 (44%), Positives = 127/204 (62%), Gaps = 9/204 (4%)

Query: 11  HFELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
              LE M+R EK ++      +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI 
Sbjct: 51  ELRLEQMLRYEKELYKAGYQAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIP 110

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            KK +E+Y+ +   A+ + I    ++ ID+ NI++AT  A+  A+  L   P   LID  
Sbjct: 111 KKKHQEIYQAVLDKALAVGIGLIDNEIIDRVNIYEATKLAMKEALSVLSHKPDYLLIDAM 170

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +  D+P ++  +IKGD+ S SIAAASI+AKVTRD+LM    K+YP Y F  + GY T  
Sbjct: 171 KLDVDIPQES--IIKGDANSQSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKS 228

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H Q ++  G + IHR TF P++++
Sbjct: 229 HLQGLERHGVTPIHRKTFEPIKSM 252


>gi|157376279|ref|YP_001474879.1| ribonuclease H [Shewanella sediminis HAW-EB3]
 gi|189043661|sp|A8FY28|RNH2_SHESH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157318653|gb|ABV37751.1| Ribonuclease H [Shewanella sediminis HAW-EB3]
          Length = 213

 Score =  154 bits (388), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 87/187 (46%), Positives = 115/187 (61%), Gaps = 8/187 (4%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DEVGRG L G VV AA+ILDP     G+NDSKK+S KKRE L+ +I   A+ ISI  
Sbjct: 21  AGVDEVGRGPLVGNVVTAAVILDPTKPITGLNDSKKLSEKKREALFTEIHEKALAISIGY 80

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-------DLPCQAFAVIK 138
           AS + ID+ NI  AT+ A+  AV  L + P S L+DG   P+       D   ++ A+IK
Sbjct: 81  ASPEEIDELNILHATMLAMQRAVAGLDMAPTSVLVDGNRTPDFSHGEDTDRNIESHAIIK 140

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD +   I+AASI+AKV RDR M +   ++P YGF  H GYPT  H + +   G    HR
Sbjct: 141 GDGLVAGISAASIVAKVIRDREMDLLDMEHPQYGFAKHKGYPTKAHFEALALHGVLPEHR 200

Query: 199 LTFRPLR 205
            +FRP++
Sbjct: 201 KSFRPVK 207


>gi|121594909|ref|YP_986805.1| ribonuclease HII [Acidovorax sp. JS42]
 gi|222110440|ref|YP_002552704.1| ribonuclease hii [Acidovorax ebreus TPSY]
 gi|189043530|sp|A1W904|RNH2_ACISJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807973|sp|B9MGN1|RNH2_DIAST RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|120606989|gb|ABM42729.1| RNase HII [Acidovorax sp. JS42]
 gi|221729884|gb|ACM32704.1| Ribonuclease H [Acidovorax ebreus TPSY]
          Length = 209

 Score =  154 bits (388), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 85/181 (46%), Positives = 121/181 (66%), Gaps = 4/181 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DE GRG LAGPVV AA+ILD      G+ DSK ++  +RE+LY++I + A+  SI+
Sbjct: 21  VAGVDEAGRGPLAGPVVAAAVILDDLQPIAGLADSKVLTAARREKLYDEIRAKALCCSIA 80

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            AS + ID+HNI +AT+ A+  AV  L++ P   L+DG  +P  D+P +A  ++KGD++ 
Sbjct: 81  EASVEEIDQHNILQATMLAMRRAVLGLRLKPVRVLVDGNRLPPLDVPAEA--IVKGDALV 138

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR     H++YP YGF  H GY TA+H   ++  G    HR +F P
Sbjct: 139 ASISAASILAKVTRDRWCAQLHQQYPVYGFAGHKGYGTAEHLAALEVHGACPQHRRSFAP 198

Query: 204 L 204
           +
Sbjct: 199 V 199


>gi|261253714|ref|ZP_05946287.1| ribonuclease HII [Vibrio orientalis CIP 102891]
 gi|260937105|gb|EEX93094.1| ribonuclease HII [Vibrio orientalis CIP 102891]
          Length = 205

 Score =  154 bits (388), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 90/200 (45%), Positives = 121/200 (60%), Gaps = 12/200 (6%)

Query: 17  MVREKNMWP----------VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           M +EK   P          +AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S K
Sbjct: 1   MAKEKQELPPFEYPQGYQLIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEK 60

Query: 67  KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           KR  L  +I   A+  S+   S + ID+ NI +AT+ A+  A++ L V P   LIDG   
Sbjct: 61  KRLALLPEIKQKALAWSVGRCSPEEIDQLNILQATMVAMQRAIDGLNVKPDLTLIDGNRC 120

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           PE L   + AV+KGD     I+AASIIAKV RD+ M    K++P++GF  H GYPT  H 
Sbjct: 121 PE-LSMDSQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKQHPEFGFAKHKGYPTKAHF 179

Query: 186 QVIKEKGPSCIHRLTFRPLR 205
           + I++ G    HR +F+P++
Sbjct: 180 EAIEQHGVIEQHRKSFKPVK 199


>gi|238019255|ref|ZP_04599681.1| hypothetical protein VEIDISOL_01119 [Veillonella dispar ATCC 17748]
 gi|237863954|gb|EEP65244.1| hypothetical protein VEIDISOL_01119 [Veillonella dispar ATCC 17748]
          Length = 265

 Score =  154 bits (388), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 88/197 (44%), Positives = 131/197 (66%), Gaps = 2/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           ++ E M  ++ M+ VAG+DEVGRG +AGPV VAA+IL P  +  G+NDSKK++ +KRE L
Sbjct: 63  YDYEGMFYDQGMYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKRETL 122

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I   A+ +S  S   + ID+ NI++AT  A+Y A+  L V   + + D   +P DL 
Sbjct: 123 YDIIMKEAVAVSCISYGPEKIDELNIYEATRQAMYEAIRTLSVPAEAVVADAMKLP-DLT 181

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGDS S +IAAASIIAKVTRDR M+    +YP YGF  H GY T  H++ +++
Sbjct: 182 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDDEYPGYGFGIHKGYYTELHKEAVEQ 241

Query: 191 KGPSCIHRLTFRPLRNL 207
           +G + +HR +F P++++
Sbjct: 242 QGVTPLHRKSFEPIKSI 258


>gi|260596603|ref|YP_003209174.1| ribonuclease HII [Cronobacter turicensis z3032]
 gi|260215780|emb|CBA28205.1| Ribonuclease HII [Cronobacter turicensis z3032]
          Length = 198

 Score =  154 bits (388), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 89/182 (48%), Positives = 111/182 (60%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L G VV AA+ILDP N   G+ DSKK+S K+R  L+++I   AI  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPLNPIVGLADSKKLSEKRRLALFDEIKEKAIAWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L V P   LIDG   P  LP  + AV+KGDS   
Sbjct: 72  RAEPHEIDELNILHATMLAMQRAVAGLAVTPEYVLIDGNRCPA-LPMPSMAVVKGDSRVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMAELDLTFPQYGFAQHKGYPTAFHLERLAEHGATAHHRRSFAPV 190

Query: 205 RN 206
           R 
Sbjct: 191 RR 192


>gi|238916977|ref|YP_002930494.1| ribonuclease HII [Eubacterium eligens ATCC 27750]
 gi|238872337|gb|ACR72047.1| ribonuclease HII [Eubacterium eligens ATCC 27750]
          Length = 218

 Score =  154 bits (388), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 92/193 (47%), Positives = 118/193 (61%), Gaps = 6/193 (3%)

Query: 14  LEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           +EAM   + M+     + GIDE GRG LAGPVV  A+IL        +NDSKK+S KKR+
Sbjct: 22  IEAMREYEEMYDTFSYICGIDEAGRGPLAGPVVAGAVILPKGKRILYVNDSKKLSEKKRD 81

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           EL++ I   A+   I   S + ID+ NI +AT +A++ AV  L V P   L D  +IP  
Sbjct: 82  ELFDVIKEEALSYGIGIVSPERIDEINILQATYEAMHEAVNKLSVKPDILLNDAVTIP-G 140

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           +  +   +IKGD+ SLSIA+ASI+AKVTRDRLM      YP+YGF  H GY T  H + I
Sbjct: 141 IDIKQIPIIKGDAKSLSIASASILAKVTRDRLMTEYDSLYPEYGFARHKGYGTKVHIEAI 200

Query: 189 KEKGPSCIHRLTF 201
           KE GP  IHR TF
Sbjct: 201 KEYGPCPIHRRTF 213


>gi|331701419|ref|YP_004398378.1| ribonuclease H [Lactobacillus buchneri NRRL B-30929]
 gi|329128762|gb|AEB73315.1| Ribonuclease H [Lactobacillus buchneri NRRL B-30929]
          Length = 257

 Score =  154 bits (388), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 86/198 (43%), Positives = 126/198 (63%), Gaps = 3/198 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F+ E     + +  VAG+DEVGRG LAGPVV AA+IL  +     +NDSK+++  +R EL
Sbjct: 60  FKYERSFWHQGLQYVAGVDEVGRGPLAGPVVAAAVILPHDFDLVSVNDSKQLTPTQRAEL 119

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
              I++ A+ + I S  +  ID+ NI++AT  A+  AVE+L   P   ++D   IP  +P
Sbjct: 120 APLISAEALSVGIGSVDNHGIDELNIYQATRVAMKQAVESLTPQPDEIIVDAMQIP--VP 177

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            +   +IKGD+ S+S++AASI+AKV RD LM    K+YP+Y F  + GY TAKH   +KE
Sbjct: 178 IRQTRLIKGDAKSISVSAASIVAKVYRDHLMDEYAKQYPEYDFPHNAGYGTAKHLAALKE 237

Query: 191 KGPSCIHRLTFRPLRNLS 208
            GP+ IHR++F P++  S
Sbjct: 238 LGPTPIHRMSFAPVKKFS 255


>gi|315640709|ref|ZP_07895811.1| ribonuclease HII [Enterococcus italicus DSM 15952]
 gi|315483464|gb|EFU73958.1| ribonuclease HII [Enterococcus italicus DSM 15952]
          Length = 255

 Score =  154 bits (388), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 91/195 (46%), Positives = 123/195 (63%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E +   K    VAGIDEVGRG LAGPVV AA+IL P     G+NDSK++   +RE L+
Sbjct: 61  EFEKIAWSKGAQAVAGIDEVGRGPLAGPVVAAAVILPPARQFLGLNDSKQVPEAQREALF 120

Query: 73  EKITSSAIISISSA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           + I+  AI       S Q ID+ NI++A+  A+  A+E+L       LID  ++P +LP 
Sbjct: 121 QAISEQAIAIGIGIISPQCIDEVNIYEASKLAMMEAIEHLSTPADYLLIDAMTLPINLPQ 180

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   +IKGD+ S SIAAASIIAKVTRDR+M+    +YP Y F+ + GY TAKH   +K  
Sbjct: 181 EK--LIKGDARSNSIAAASIIAKVTRDRMMKQYAIEYPGYDFEHNAGYGTAKHLAGLKAN 238

Query: 192 GPSCIHRLTFRPLRN 206
           G + IHR +F P++N
Sbjct: 239 GITPIHRKSFAPVKN 253


>gi|228998613|ref|ZP_04158200.1| Ribonuclease HII [Bacillus mycoides Rock3-17]
 gi|228761081|gb|EEM10040.1| Ribonuclease HII [Bacillus mycoides Rock3-17]
          Length = 272

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/194 (48%), Positives = 128/194 (65%), Gaps = 3/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y++
Sbjct: 78  EKALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYDE 137

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI I +   S Q ID+ NI++AT  A+  A+ NL   P   LID   +P  +P   
Sbjct: 138 IKEQAIAIGVGIVSPQVIDEINIYQATKRAMLDAIANLACTPEHLLIDAMKLPTPIP--Q 195

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++IKGD+ S+SI+AASIIAKVTRDR+M+   K+YP YGF+ H+GY T +H Q I+  G 
Sbjct: 196 TSIIKGDAKSISISAASIIAKVTRDRMMKELGKEYPAYGFEQHMGYGTKQHLQAIEMYGV 255

Query: 194 SCIHRLTFRPLRNL 207
              HR TF P++++
Sbjct: 256 LEEHRKTFAPIKDM 269


>gi|330830741|ref|YP_004393693.1| ribonuclease HII [Aeromonas veronii B565]
 gi|328805877|gb|AEB51076.1| Ribonuclease HII [Aeromonas veronii B565]
          Length = 196

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/181 (50%), Positives = 121/181 (66%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L G VV AA+ILDP N   G+NDSKK+S KKR  L+++I   A+  +I 
Sbjct: 11  VAGVDEVGRGPLVGDVVTAAVILDPANPIAGLNDSKKLSEKKRLALFDEIKEKALAWAIG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID+ NI  AT+ A+  AV  L+V P    IDG   P  LP +A AV+KGDS+  
Sbjct: 71  RASPAEIDELNILHATMLAMQRAVAGLKVTPELVFIDGNRCPA-LPMEARAVVKGDSLVA 129

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKVTRD  M     ++P+YGF  H GYPTA+H  ++ E+GP   +R +F+P+
Sbjct: 130 AISAASILAKVTRDGEMTELDSRHPEYGFARHKGYPTAEHLAILAERGPLPEYRKSFKPV 189

Query: 205 R 205
           R
Sbjct: 190 R 190


>gi|125973279|ref|YP_001037189.1| ribonuclease HII [Clostridium thermocellum ATCC 27405]
 gi|189043587|sp|A3DDG7|RNH2_CLOTH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|125713504|gb|ABN51996.1| RNase HII [Clostridium thermocellum ATCC 27405]
          Length = 256

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/194 (45%), Positives = 123/194 (63%), Gaps = 7/194 (3%)

Query: 14  LEAMVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           LE  + EK  +      +AGIDE GRG LAGPVV AA+IL  +    G+NDSKK++  +R
Sbjct: 58  LEMCIYEKEAYQRGYKLIAGIDEAGRGPLAGPVVAAAVILPQDVFIEGLNDSKKLTENQR 117

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E+L++ I   AI + I     + ID+ NI  AT  A+  AV NL+ +P    ID   + +
Sbjct: 118 EKLFDVINDKAIGVGIGIVDEKQIDEINILNATKKAMKLAVGNLKPVPDILFIDSLKL-D 176

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           D+  +  +++KGD+ S+SIAAASIIAKVTRDR++R   KKYP YGF  H GY T +H + 
Sbjct: 177 DINIEQNSIVKGDAKSVSIAAASIIAKVTRDRILREMDKKYPMYGFARHKGYGTGEHIEA 236

Query: 188 IKEKGPSCIHRLTF 201
           IK+ G   IHR++F
Sbjct: 237 IKKYGICPIHRVSF 250


>gi|239623747|ref|ZP_04666778.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521778|gb|EEQ61644.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 219

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/205 (46%), Positives = 122/205 (59%), Gaps = 8/205 (3%)

Query: 8   ERPHFELEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           E+    LEAM   +  +     + GIDE GRG LAGPV   A+IL  +     +NDSKK+
Sbjct: 12  EKELARLEAMTEYEKEYGSSAFICGIDEAGRGPLAGPVAAGAVILPKDCRILYLNDSKKL 71

Query: 64  SHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           S K+REEL+E+I   A+  S+  A+   ID+ NI +AT +A+  AV  L V P   L D 
Sbjct: 72  SEKRREELFEEIKEKAVAWSVGIATPARIDEINILQATYEAMREAVGQLTVKPDVLLNDA 131

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
            +IP DL      +IKGD+ SLSIAAASI+AKVTRD +M    + +P YGF  H GY TA
Sbjct: 132 VTIP-DLDILQVPIIKGDAKSLSIAAASILAKVTRDHMMAGYEEMFPGYGFAKHKGYGTA 190

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207
            H   I+E GP  IHR TF  +RN 
Sbjct: 191 AHIAAIRELGPCPIHRRTF--IRNF 213


>gi|197104042|ref|YP_002129419.1| ribonuclease HII [Phenylobacterium zucineum HLK1]
 gi|196477462|gb|ACG76990.1| ribonuclease HII [Phenylobacterium zucineum HLK1]
          Length = 230

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 88/184 (47%), Positives = 111/184 (60%), Gaps = 4/184 (2%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAII- 81
           PV G+DE GRG  AGPV   A+ILD  P  +P G++DSKK+S K RE L E+I   A+  
Sbjct: 25  PVCGVDEAGRGPWAGPVCAGAVILDSNPRKVPKGLDDSKKLSAKAREALEEEIKEKAVAW 84

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
            +  AS   I   NI  AT  A+  A+E + V P  AL+DG +   DLPC+   V+ GD+
Sbjct: 85  GVGFASVSEIASLNILHATGLAMCRAIEAMAVQPAFALVDG-NYRFDLPCEVTTVVGGDA 143

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            S SIAAASI+AKV RDRLM      YP YGF SH GY    H + +   GP  IHRL +
Sbjct: 144 KSKSIAAASILAKVARDRLMVEMDALYPGYGFASHKGYNAPSHVEALVSLGPCEIHRLAW 203

Query: 202 RPLR 205
           RP++
Sbjct: 204 RPVK 207


>gi|295100799|emb|CBK98344.1| RNase HII [Faecalibacterium prausnitzii L2-6]
          Length = 214

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/176 (47%), Positives = 106/176 (60%), Gaps = 1/176 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG L GPV VAA ILDP    +GINDSKK+S KKRE L+++I   A+   I  
Sbjct: 28  AGVDEAGRGPLCGPVCVAACILDPEAPVYGINDSKKLSEKKREALFDQIVEKALAYRIVF 87

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
                ID+ NI  AT+  +  AVE L ++P   L+DG  IP  L   A  V+KGD+ S S
Sbjct: 88  VGPDIIDRDNILNATMGGMRQAVEGLDIVPNLVLVDGNRIPAGLTMPAQPVVKGDATSAS 147

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           I AASI+AKV+RDR M    K+YP Y    H GY T  H ++I + G    +R +F
Sbjct: 148 IGAASILAKVSRDRYMLELDKQYPQYQLAKHKGYGTKLHYELIAQYGIQPFYRRSF 203


>gi|228992565|ref|ZP_04152492.1| Ribonuclease HII [Bacillus pseudomycoides DSM 12442]
 gi|228767199|gb|EEM15835.1| Ribonuclease HII [Bacillus pseudomycoides DSM 12442]
          Length = 272

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/194 (48%), Positives = 128/194 (65%), Gaps = 3/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y++
Sbjct: 78  EKALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPKDFYIPGLNDSKKLSEAKRERFYDE 137

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI I +   S Q ID+ NI++AT  A+  A+ NL   P   LID   +P  +P   
Sbjct: 138 IKEQAIAIGVGIVSPQVIDEINIYQATKRAMLDAIANLACTPEHLLIDAMKLPTPIP--Q 195

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++IKGD+ S+SI+AASIIAKVTRDR+M+   K+YP YGF+ H+GY T +H Q I+  G 
Sbjct: 196 TSIIKGDAKSISISAASIIAKVTRDRMMKELGKEYPAYGFEQHMGYGTKQHLQAIEMYGV 255

Query: 194 SCIHRLTFRPLRNL 207
              HR TF P++++
Sbjct: 256 LEEHRKTFAPIKDM 269


>gi|170023329|ref|YP_001719834.1| ribonuclease HII [Yersinia pseudotuberculosis YPIII]
 gi|238688489|sp|B1JQH4|RNH2_YERPY RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|169749863|gb|ACA67381.1| Ribonuclease H [Yersinia pseudotuberculosis YPIII]
          Length = 198

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 115/183 (62%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+ILDPN    G+ DSKK+S K+R  LY++IT  A+  S+ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPNRPIVGLADSKKLSEKRRLSLYDEITEKALSWSLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  A + A+  AV  L ++P   LIDG   P+ L   + AV+KGDS   
Sbjct: 73  RAEPEEIDQLNILHAAMLAMQRAVSGLHIVPDYVLIDGNRCPK-LQMPSLAVVKGDSRVA 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M      +P+YGF  H GYPTA H + +   G +  HR +F P+
Sbjct: 132 EISAASILAKVTRDREMTELDLLFPEYGFAQHKGYPTAFHLEKLAALGATVHHRRSFGPV 191

Query: 205 RNL 207
           + +
Sbjct: 192 KRV 194


>gi|229006113|ref|ZP_04163801.1| Ribonuclease HII [Bacillus mycoides Rock1-4]
 gi|228755189|gb|EEM04546.1| Ribonuclease HII [Bacillus mycoides Rock1-4]
          Length = 257

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/194 (48%), Positives = 128/194 (65%), Gaps = 3/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y++
Sbjct: 63  EKALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYDE 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI I +   S Q ID+ NI++AT  A+  A+ NL   P   LID   +P  +P   
Sbjct: 123 IKEQAIAIGVGIVSPQVIDEINIYQATKRAMLDAIANLACTPEHLLIDAMKLPTPIP--Q 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++IKGD+ S+SI+AASIIAKVTRDR+M+   K+YP YGF+ H+GY T +H Q I+  G 
Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGKEYPAYGFEQHMGYGTKQHLQAIEMYGV 240

Query: 194 SCIHRLTFRPLRNL 207
              HR TF P++++
Sbjct: 241 LEEHRKTFAPIKDM 254


>gi|312866631|ref|ZP_07726846.1| ribonuclease HII [Streptococcus parasanguinis F0405]
 gi|311097930|gb|EFQ56159.1| ribonuclease HII [Streptococcus parasanguinis F0405]
          Length = 255

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/198 (45%), Positives = 126/198 (63%), Gaps = 7/198 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREE 70
           +E E   R   M  +AG+DEVGRG LAGPVV AA+IL     IP G+NDSKKI   K +E
Sbjct: 60  YEKECYAR--GMELIAGVDEVGRGPLAGPVVAAAVILPKACKIP-GLNDSKKIPKSKHKE 116

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           +YE +  +AI I I    +  ID+ NI++AT  A+  A+  L   P+  LID   +  DL
Sbjct: 117 IYEAVLQNAIAIGIGIKDNHVIDQVNIYEATKLAMMEAIGQLDPQPQHLLIDAMKL--DL 174

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P    ++IKGD+ SLSIAAASI+AKVTRD++M    ++YP Y F  + GY TAKH   ++
Sbjct: 175 PISQTSIIKGDANSLSIAAASIVAKVTRDQMMEEFDREYPGYDFAQNAGYGTAKHLDGLE 234

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + G + IHR +F P++++
Sbjct: 235 QLGVTPIHRRSFEPVKSM 252


>gi|307703411|ref|ZP_07640353.1| ribonuclease HII family protein [Streptococcus oralis ATCC 35037]
 gi|307622818|gb|EFO01813.1| ribonuclease HII family protein [Streptococcus oralis ATCC 35037]
          Length = 203

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/194 (44%), Positives = 123/194 (63%), Gaps = 3/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  + ++ +  +AG+DEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK  E+Y  
Sbjct: 5   EKELYKQGLTLIAGVDEVGRGPLAGPVVAAAVILPKNCKIRGLNDSKKIPKKKHLEIYHA 64

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           +   A+ I I    +Q ID+ NI++AT  A+  A+  +   P   LID   +   +P   
Sbjct: 65  VQDQALAIGIGIMDNQVIDQVNIYEATKLAMKEAISQVSPKPEHLLIDAMKLELSIP--Q 122

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            A+IKGD+ SLSIAAASI+AKVTRD LM+   ++YP Y F ++ GY TAKH + +++ G 
Sbjct: 123 TAIIKGDANSLSIAAASIVAKVTRDELMKEYDQQYPGYDFTANAGYGTAKHLEGLEKLGV 182

Query: 194 SCIHRLTFRPLRNL 207
           + IHR +F P++ L
Sbjct: 183 TPIHRTSFEPVKTL 196


>gi|148989186|ref|ZP_01820576.1| ribonuclease HII [Streptococcus pneumoniae SP6-BS73]
 gi|147925409|gb|EDK76487.1| ribonuclease HII [Streptococcus pneumoniae SP6-BS73]
          Length = 259

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/204 (43%), Positives = 128/204 (62%), Gaps = 9/204 (4%)

Query: 11  HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           +  LE+M+  EK ++      + GIDEVGRG LAGPVV AA+IL  N     +NDSKKI 
Sbjct: 51  NLRLESMLSYEKELYKQGLTLIVGIDEVGRGPLAGPVVAAAVILPKNCKIKDLNDSKKIP 110

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            KK  E+++ +   ++ I I    +Q ID+ NI++AT  A+  A+  L   P   LID  
Sbjct: 111 KKKHLEIFQAVQDQSLSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +  DLP    ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAK
Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAK 228

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H + + + G + IHR +F P+++L
Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252


>gi|301063461|ref|ZP_07203993.1| ribonuclease HII [delta proteobacterium NaphS2]
 gi|300442400|gb|EFK06633.1| ribonuclease HII [delta proteobacterium NaphS2]
          Length = 215

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 88/210 (41%), Positives = 127/210 (60%), Gaps = 8/210 (3%)

Query: 1   MFCNSIPERPH--FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GI 57
           +F N + + P   F  E   R      +AG+DE GRG LAGPVV AA+++ P+ + F GI
Sbjct: 9   LFPNDLSQCPQDPFYHETQARNSGYRLIAGVDEAGRGPLAGPVVAAAVMI-PDGVRFSGI 67

Query: 58  NDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116
            DSKK++ + R E + +I   A+   I   S  YI++ NI  A+L+A+  AV+ L   P 
Sbjct: 68  KDSKKMTVRARIEAFHRIEGGALTFGIGVVSVSYIEEFNILNASLEAMLRAVQVLDPQPE 127

Query: 117 SALIDG-RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
             L+DG  ++P  +  +     KGD +S SI+AAS++AKV RDR+M   H  YP+YGFD 
Sbjct: 128 MILVDGIHTVPTSIKQKCLK--KGDQVSRSISAASVLAKVYRDRIMAAYHHMYPEYGFDK 185

Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           + GY T +H + IKE GP  +HRLTF+ +R
Sbjct: 186 NKGYGTRQHLEAIKEHGPCPVHRLTFKGVR 215


>gi|24111618|ref|NP_706128.1| ribonuclease HII [Shigella flexneri 2a str. 301]
 gi|30061740|ref|NP_835911.1| ribonuclease HII [Shigella flexneri 2a str. 2457T]
 gi|82775573|ref|YP_401920.1| ribonuclease HII [Shigella dysenteriae Sd197]
 gi|110804235|ref|YP_687755.1| ribonuclease HII [Shigella flexneri 5 str. 8401]
 gi|309787143|ref|ZP_07681755.1| ribonuclease HII family protein [Shigella dysenteriae 1617]
 gi|39932374|sp|Q83MN1|RNH2_SHIFL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|97189271|sp|Q32JS6|RNH2_SHIDS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|123147263|sp|Q0T826|RNH2_SHIF8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|24050387|gb|AAN41835.1| RNAse HII [Shigella flexneri 2a str. 301]
 gi|30039982|gb|AAP15716.1| RNAse HII [Shigella flexneri 2a str. 2457T]
 gi|81239721|gb|ABB60431.1| RNAse HII [Shigella dysenteriae Sd197]
 gi|110613783|gb|ABF02450.1| RNAse HII [Shigella flexneri 5 str. 8401]
 gi|281599538|gb|ADA72522.1| Ribonuclease HII [Shigella flexneri 2002017]
 gi|308924721|gb|EFP70216.1| ribonuclease HII family protein [Shigella dysenteriae 1617]
 gi|313646756|gb|EFS11215.1| ribonuclease HII family protein [Shigella flexneri 2a str. 2457T]
 gi|332762020|gb|EGJ92291.1| ribonuclease HII family protein [Shigella flexneri 2747-71]
 gi|332762187|gb|EGJ92456.1| ribonuclease HII family protein [Shigella flexneri 4343-70]
 gi|332765032|gb|EGJ95260.1| ribonuclease HII family protein [Shigella flexneri K-671]
 gi|332768686|gb|EGJ98866.1| ribonuclease HII family protein [Shigella flexneri 2930-71]
 gi|333009387|gb|EGK28843.1| ribonuclease HII family protein [Shigella flexneri K-218]
 gi|333010678|gb|EGK30111.1| ribonuclease HII family protein [Shigella flexneri VA-6]
 gi|333022198|gb|EGK41437.1| ribonuclease HII family protein [Shigella flexneri K-304]
          Length = 198

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/182 (48%), Positives = 112/182 (61%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  LYE+I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEEIKEKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  A AV+KGDS   
Sbjct: 72  RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMAVVKGDSRVP 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|42519032|ref|NP_964962.1| ribonuclease HII [Lactobacillus johnsonii NCC 533]
 gi|73917610|sp|Q74JK1|RNH2_LACJO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|41583319|gb|AAS08928.1| ribonuclease HII [Lactobacillus johnsonii NCC 533]
          Length = 250

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/190 (45%), Positives = 124/190 (65%), Gaps = 7/190 (3%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           EK  W     VAG+DEVGRG LAGPVV AA+IL  +     +NDSKK+S KKR+ L+ KI
Sbjct: 58  EKEFWQKDQLVAGVDEVGRGPLAGPVVTAAVILPHDFDLIDVNDSKKLSPKKRQALFPKI 117

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
              A+ +S+  A++  ID+ NI++A   A+ HAV+ L+V P + L+D  ++P ++P    
Sbjct: 118 LEKAVSVSVGLANNDVIDQINIYEADRLAMAHAVQGLKVKPDALLVDAMNVPLNIP--QV 175

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            +I GD+ S SIAAASI+AKV RD LM    + YP+Y F  + GY T +H + +++ GP+
Sbjct: 176 KLIHGDAKSNSIAAASIVAKVFRDNLMDAYGELYPEYDFKHNAGYGTREHMEALEKYGPT 235

Query: 195 CIHRLTFRPL 204
            IHR +F P+
Sbjct: 236 PIHRRSFAPV 245


>gi|24379434|ref|NP_721389.1| ribonuclease HII [Streptococcus mutans UA159]
 gi|39932397|sp|Q8DUE1|RNH2_STRMU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|24377368|gb|AAN58695.1|AE014939_2 putative ribonuclease HII [Streptococcus mutans UA159]
          Length = 260

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/204 (45%), Positives = 133/204 (65%), Gaps = 12/204 (5%)

Query: 14  LEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           LE M+R EK+++      +AGIDEVGRG LAGPVV A +IL  N     +NDSKKI  KK
Sbjct: 54  LENMLRYEKDLYLQGYQAIAGIDEVGRGPLAGPVVAACVILPKNCKIRHLNDSKKIPKKK 113

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVI---PRSALIDGR 123
            EE+Y+++   A+ I I   S + ID+ NI++AT  A+  A+++LQ +   P   LID  
Sbjct: 114 HEEIYKQVVKVALAIGIGRISSEMIDQVNIYEATKMAMLQAIDDLQGLVSRPDYLLIDAM 173

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           ++   +P  +  +IKGD+ SLSIAAASI+AKVTRDR+M    + YP YGF  +VGY T +
Sbjct: 174 NLGISIPQSS--IIKGDAHSLSIAAASIVAKVTRDRMMIGYDEIYPGYGFAQNVGYGTKQ 231

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H + ++  G + IHR TF P++++
Sbjct: 232 HLEGLETLGVTPIHRRTFEPIKSM 255


>gi|194014254|ref|ZP_03052871.1| ribonuclease HII (RNase HII) [Bacillus pumilus ATCC 7061]
 gi|194013280|gb|EDW22845.1| ribonuclease HII (RNase HII) [Bacillus pumilus ATCC 7061]
          Length = 254

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/197 (43%), Positives = 120/197 (60%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            + E   + +    +AGIDE GRG LAGPVV AA+IL  + +  G+NDSK++S KKR   
Sbjct: 58  LQFENNAKAQGYTCIAGIDEAGRGPLAGPVVAAAVILKEDTVLLGLNDSKQLSEKKRLAY 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I   A+ I I       ID+ NI++A+  A+  AVE L   P   LID  ++P  LP
Sbjct: 118 YDLIQKEALDIGIGIVDAATIDEINIYEASRLAMVRAVEQLTHTPDYLLIDAMTLP--LP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +IKGD+ S SIAA + IAKVTRD++M    +KYP+Y F+ H GY T +H   I+ 
Sbjct: 176 IHQENIIKGDAKSASIAAGACIAKVTRDQMMEEYGRKYPEYQFEKHKGYGTKEHLAAIQT 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHRL+F P++++
Sbjct: 236 HGAAPIHRLSFAPVKSV 252


>gi|309796360|ref|ZP_07690769.1| ribonuclease HII [Escherichia coli MS 145-7]
 gi|308120064|gb|EFO57326.1| ribonuclease HII [Escherichia coli MS 145-7]
          Length = 198

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/182 (48%), Positives = 112/182 (61%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  LYE+I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEEIKEKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  A AV+KGDS   
Sbjct: 72  RAEPHEIDELNILHATMLAMQRAVAELHIAPEYVLIDGNRCPK-LPMPAMAVVKGDSRVP 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|16128176|ref|NP_414725.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           str. K-12 substr. MG1655]
 gi|74310803|ref|YP_309222.1| ribonuclease HII [Shigella sonnei Ss046]
 gi|89107063|ref|AP_000843.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           str. K-12 substr. W3110]
 gi|157157454|ref|YP_001461352.1| ribonuclease HII [Escherichia coli E24377A]
 gi|157159648|ref|YP_001456966.1| ribonuclease HII [Escherichia coli HS]
 gi|170079819|ref|YP_001729139.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188492814|ref|ZP_03000084.1| ribonuclease HII [Escherichia coli 53638]
 gi|191167029|ref|ZP_03028851.1| ribonuclease HII [Escherichia coli B7A]
 gi|193063198|ref|ZP_03044289.1| ribonuclease HII [Escherichia coli E22]
 gi|193067763|ref|ZP_03048730.1| ribonuclease HII [Escherichia coli E110019]
 gi|194428257|ref|ZP_03060799.1| ribonuclease HII [Escherichia coli B171]
 gi|209917373|ref|YP_002291457.1| ribonuclease HII [Escherichia coli SE11]
 gi|218552764|ref|YP_002385677.1| ribonuclease HII [Escherichia coli IAI1]
 gi|218693648|ref|YP_002401315.1| ribonuclease HII [Escherichia coli 55989]
 gi|238899581|ref|YP_002925377.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           BW2952]
 gi|254037602|ref|ZP_04871679.1| ribonuclease HII [Escherichia sp. 1_1_43]
 gi|256021615|ref|ZP_05435480.1| ribonuclease HII [Shigella sp. D9]
 gi|256025495|ref|ZP_05439360.1| ribonuclease HII [Escherichia sp. 4_1_40B]
 gi|260842415|ref|YP_003220193.1| ribonuclease HII [Escherichia coli O103:H2 str. 12009]
 gi|260853393|ref|YP_003227284.1| ribonuclease HII [Escherichia coli O26:H11 str. 11368]
 gi|260866332|ref|YP_003232734.1| ribonuclease HII [Escherichia coli O111:H- str. 11128]
 gi|293476840|ref|ZP_06665248.1| ribonuclease HII [Escherichia coli B088]
 gi|300816223|ref|ZP_07096446.1| ribonuclease HII [Escherichia coli MS 107-1]
 gi|300824094|ref|ZP_07104214.1| ribonuclease HII [Escherichia coli MS 119-7]
 gi|300923025|ref|ZP_07139092.1| ribonuclease HII [Escherichia coli MS 182-1]
 gi|300949785|ref|ZP_07163759.1| ribonuclease HII [Escherichia coli MS 116-1]
 gi|300956066|ref|ZP_07168391.1| ribonuclease HII [Escherichia coli MS 175-1]
 gi|301028676|ref|ZP_07191897.1| ribonuclease HII [Escherichia coli MS 196-1]
 gi|301330019|ref|ZP_07222703.1| ribonuclease HII [Escherichia coli MS 78-1]
 gi|301646506|ref|ZP_07246381.1| ribonuclease HII [Escherichia coli MS 146-1]
 gi|307136783|ref|ZP_07496139.1| ribonuclease HII [Escherichia coli H736]
 gi|307311369|ref|ZP_07591011.1| Ribonuclease H [Escherichia coli W]
 gi|331640637|ref|ZP_08341785.1| ribonuclease HII [Escherichia coli H736]
 gi|331666424|ref|ZP_08367305.1| ribonuclease HII [Escherichia coli TA271]
 gi|331680762|ref|ZP_08381421.1| ribonuclease HII [Escherichia coli H591]
 gi|332282857|ref|ZP_08395270.1| ribonuclease HII degrades RNA of DNA-RNA hybrids [Shigella sp. D9]
 gi|2507334|sp|P10442|RNH2_ECOLI RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|97189278|sp|Q3Z5H5|RNH2_SHISS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166991065|sp|A7ZHS3|RNH2_ECO24 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166991066|sp|A7ZWC9|RNH2_ECOHS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|226736819|sp|B7M1Y6|RNH2_ECO8A RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|229564284|sp|B1XD52|RNH2_ECODH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238056777|sp|B6HZF7|RNH2_ECOSE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807975|sp|B7LGP5|RNH2_ECO55 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|259494063|sp|C4ZRS5|RNH2_ECOBW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|1552760|gb|AAB08612.1| ribonuclease HII [Escherichia coli]
 gi|1786380|gb|AAC73294.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           str. K-12 substr. MG1655]
 gi|73854280|gb|AAZ86987.1| RNAse HII [Shigella sonnei Ss046]
 gi|85674372|dbj|BAA77858.2| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           str. K12 substr. W3110]
 gi|157065328|gb|ABV04583.1| ribonuclease HII [Escherichia coli HS]
 gi|157079484|gb|ABV19192.1| ribonuclease HII [Escherichia coli E24377A]
 gi|169887654|gb|ACB01361.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188488013|gb|EDU63116.1| ribonuclease HII [Escherichia coli 53638]
 gi|190902922|gb|EDV62649.1| ribonuclease HII [Escherichia coli B7A]
 gi|192931106|gb|EDV83709.1| ribonuclease HII [Escherichia coli E22]
 gi|192959175|gb|EDV89611.1| ribonuclease HII [Escherichia coli E110019]
 gi|194413632|gb|EDX29912.1| ribonuclease HII [Escherichia coli B171]
 gi|209910632|dbj|BAG75706.1| ribonuclease HII [Escherichia coli SE11]
 gi|218350380|emb|CAU96063.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           55989]
 gi|218359532|emb|CAQ97070.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           IAI1]
 gi|226840708|gb|EEH72710.1| ribonuclease HII [Escherichia sp. 1_1_43]
 gi|238863470|gb|ACR65468.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           BW2952]
 gi|257752042|dbj|BAI23544.1| ribonuclease HII [Escherichia coli O26:H11 str. 11368]
 gi|257757562|dbj|BAI29059.1| ribonuclease HII [Escherichia coli O103:H2 str. 12009]
 gi|257762688|dbj|BAI34183.1| ribonuclease HII [Escherichia coli O111:H- str. 11128]
 gi|260450614|gb|ACX41036.1| Ribonuclease H [Escherichia coli DH1]
 gi|291321293|gb|EFE60735.1| ribonuclease HII [Escherichia coli B088]
 gi|299878308|gb|EFI86519.1| ribonuclease HII [Escherichia coli MS 196-1]
 gi|300317096|gb|EFJ66880.1| ribonuclease HII [Escherichia coli MS 175-1]
 gi|300420652|gb|EFK03963.1| ribonuclease HII [Escherichia coli MS 182-1]
 gi|300450817|gb|EFK14437.1| ribonuclease HII [Escherichia coli MS 116-1]
 gi|300523371|gb|EFK44440.1| ribonuclease HII [Escherichia coli MS 119-7]
 gi|300531430|gb|EFK52492.1| ribonuclease HII [Escherichia coli MS 107-1]
 gi|300843930|gb|EFK71690.1| ribonuclease HII [Escherichia coli MS 78-1]
 gi|301075292|gb|EFK90098.1| ribonuclease HII [Escherichia coli MS 146-1]
 gi|306908348|gb|EFN38846.1| Ribonuclease H [Escherichia coli W]
 gi|315059401|gb|ADT73728.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           W]
 gi|315134873|dbj|BAJ42032.1| ribonuclease HII [Escherichia coli DH1]
 gi|315616332|gb|EFU96950.1| ribonuclease HII family protein [Escherichia coli 3431]
 gi|320200291|gb|EFW74877.1| Ribonuclease HII [Escherichia coli EC4100B]
 gi|323157980|gb|EFZ44082.1| ribonuclease HII family protein [Escherichia coli EPECa14]
 gi|323160197|gb|EFZ46156.1| ribonuclease HII family protein [Escherichia coli E128010]
 gi|323165884|gb|EFZ51666.1| ribonuclease HII family protein [Shigella sonnei 53G]
 gi|323170975|gb|EFZ56624.1| ribonuclease HII family protein [Escherichia coli LT-68]
 gi|323176498|gb|EFZ62090.1| ribonuclease HII family protein [Escherichia coli 1180]
 gi|323181691|gb|EFZ67105.1| ribonuclease HII family protein [Escherichia coli 1357]
 gi|323380040|gb|ADX52308.1| Ribonuclease H [Escherichia coli KO11]
 gi|323939941|gb|EGB36139.1| ribonuclease HII [Escherichia coli E482]
 gi|323945660|gb|EGB41709.1| ribonuclease HII [Escherichia coli H120]
 gi|323970662|gb|EGB65918.1| ribonuclease HII [Escherichia coli TA007]
 gi|324017810|gb|EGB87029.1| ribonuclease HII [Escherichia coli MS 117-3]
 gi|324118303|gb|EGC12198.1| ribonuclease HII [Escherichia coli E1167]
 gi|331040383|gb|EGI12590.1| ribonuclease HII [Escherichia coli H736]
 gi|331066635|gb|EGI38512.1| ribonuclease HII [Escherichia coli TA271]
 gi|331072225|gb|EGI43561.1| ribonuclease HII [Escherichia coli H591]
 gi|332105209|gb|EGJ08555.1| ribonuclease HII degrades RNA of DNA-RNA hybrids [Shigella sp. D9]
 gi|332341516|gb|AEE54850.1| ribonuclease HII RnhB [Escherichia coli UMNK88]
          Length = 198

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/182 (48%), Positives = 112/182 (61%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  LYE+I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEEIKEKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  A AV+KGDS   
Sbjct: 72  RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMAVVKGDSRVP 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|290512456|ref|ZP_06551822.1| ribonuclease HII [Klebsiella sp. 1_1_55]
 gi|289774797|gb|EFD82799.1| ribonuclease HII [Klebsiella sp. 1_1_55]
          Length = 198

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/181 (48%), Positives = 112/181 (61%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L ++I   A+  S+ 
Sbjct: 11  VAGVDEVGRGPLVGAVVTAAVILDPAKPIVGLNDSKKLSEKRRLALCDEIKEKALCWSLG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L ++P   LIDG   P  LP  + AV+KGDS   
Sbjct: 71  RAEPHEIDELNILHATMLAMQRAVAGLSIVPEFVLIDGNRCP-SLPMPSLAVVKGDSRVA 129

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H Q ++E G +  HR +F P+
Sbjct: 130 EISAASILAKVTRDAEMATLDLAFPHYGFAQHKGYPTAVHLQKLQEHGATEHHRRSFGPV 189

Query: 205 R 205
           +
Sbjct: 190 K 190


>gi|290580555|ref|YP_003484947.1| putative ribonuclease HII [Streptococcus mutans NN2025]
 gi|254997454|dbj|BAH88055.1| putative ribonuclease HII [Streptococcus mutans NN2025]
          Length = 260

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/204 (45%), Positives = 133/204 (65%), Gaps = 12/204 (5%)

Query: 14  LEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           LE M+R EK+++      +AGIDEVGRG LAGPVV A +IL  N     +NDSKKI  KK
Sbjct: 54  LENMLRYEKDLYLQGYQAIAGIDEVGRGPLAGPVVAACVILPKNCKIRHLNDSKKIPKKK 113

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVI---PRSALIDGR 123
            EE+Y+++   A+ I I   S + ID+ NI++AT  A+  A+++LQ +   P   LID  
Sbjct: 114 HEEIYKQVVKVALAIGIGRISSEMIDQVNIYEATKMAMLQAIDDLQGLVSRPDYLLIDAM 173

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           ++   +P  +  +IKGD+ SLSIAAASI+AKVTRDR+M    + YP YGF  +VGY T +
Sbjct: 174 NLGISIPQSS--IIKGDAHSLSIAAASIVAKVTRDRMMIGYDEIYPGYGFAQNVGYGTKQ 231

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H + ++  G + IHR TF P++++
Sbjct: 232 HLEGLETLGVTPIHRRTFEPIKSM 255


>gi|260887868|ref|ZP_05899131.1| ribonuclease HII [Selenomonas sputigena ATCC 35185]
 gi|330838733|ref|YP_004413313.1| Ribonuclease H [Selenomonas sputigena ATCC 35185]
 gi|260862374|gb|EEX76874.1| ribonuclease HII [Selenomonas sputigena ATCC 35185]
 gi|329746497|gb|AEB99853.1| Ribonuclease H [Selenomonas sputigena ATCC 35185]
          Length = 255

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/198 (45%), Positives = 130/198 (65%), Gaps = 3/198 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +  E + REK    VAG+DE GRG LAGPVVVAA+IL        +NDSKK+S   RE+L
Sbjct: 57  YHYEFLAREKGCTLVAGVDEAGRGPLAGPVVVAAVILPLGFFLPHLNDSKKLSAAMREKL 116

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  IT  A+ + I S S + ID+ NI++AT   +   V +L+  P+  L+D  ++P  LP
Sbjct: 117 FSAITEGAVAVEIVSISEKIIDEKNIYQATKQGMCEVVASLRPQPQHVLLD--AVPLKLP 174

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +F+++ GD+ S SIAAASI+AKVTRDRLM    ++YP YGF  H GY TA+H + +++
Sbjct: 175 MTSFSIVHGDAKSASIAAASIMAKVTRDRLMLKYDEEYPQYGFKKHKGYGTAEHLEALQK 234

Query: 191 KGPSCIHRLTFRPLRNLS 208
            GP  IHR +F P+R+++
Sbjct: 235 YGPCPIHRRSFEPIRSMA 252


>gi|206579509|ref|YP_002240329.1| ribonuclease HII [Klebsiella pneumoniae 342]
 gi|288937035|ref|YP_003441094.1| ribonuclease H [Klebsiella variicola At-22]
 gi|238056780|sp|B5Y1I8|RNH2_KLEP3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|206568567|gb|ACI10343.1| ribonuclease HII [Klebsiella pneumoniae 342]
 gi|288891744|gb|ADC60062.1| Ribonuclease H [Klebsiella variicola At-22]
          Length = 199

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/181 (48%), Positives = 112/181 (61%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L ++I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPAKPIVGLNDSKKLSEKRRLALCDEIKEKALCWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L ++P   LIDG   P  LP  + AV+KGDS   
Sbjct: 72  RAEPHEIDELNILHATMLAMQRAVAGLSIVPEFVLIDGNRCP-SLPMPSLAVVKGDSRVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H Q ++E G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMATLDLAFPHYGFAQHKGYPTAVHLQKLQEHGATEHHRRSFGPV 190

Query: 205 R 205
           +
Sbjct: 191 K 191


>gi|114567000|ref|YP_754154.1| ribonuclease H [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|122318000|sp|Q0AWX1|RNH2_SYNWW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|114337935|gb|ABI68783.1| RNase HII [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 255

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/183 (45%), Positives = 118/183 (64%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AGIDE GRG +AGPV+ AA+IL  +    GINDSKK++  KR +L  +I   AI  S++
Sbjct: 60  IAGIDEAGRGPIAGPVMAAAVILSRDFFCPGINDSKKLTALKRSKLAAEIKKQAISWSVA 119

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           +    Y+DK NI  AT +A+  AV+NL   P   LID   +P D+  + + +IKGDS+S+
Sbjct: 120 AVFPSYLDKVNILNATREAMLLAVKNLSPRPEFLLIDAVQLP-DIDIKQYPLIKGDSLSV 178

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASI+AKV RDR+M      YP YGF  H GY T +H Q +   G   +HR++F P+
Sbjct: 179 SIAAASILAKVERDRVMEAFDSLYPGYGFSRHKGYATREHLQSLLRLGTCALHRVSFEPV 238

Query: 205 RNL 207
           +++
Sbjct: 239 KSM 241


>gi|271499509|ref|YP_003332534.1| Ribonuclease H [Dickeya dadantii Ech586]
 gi|270343064|gb|ACZ75829.1| Ribonuclease H [Dickeya dadantii Ech586]
          Length = 198

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/182 (46%), Positives = 114/182 (62%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP+    G+ DSK +S K+R  LY++I   A+  S+ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLADSKTLSEKRRLALYDEIREKALAWSLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID  NI  AT+ A+  AV  L V P   LIDG   P  LP  + AV+KGDS   
Sbjct: 73  RAEPEEIDTLNILHATMLAMQRAVAALPVTPDFVLIDGNRCPA-LPMPSQAVVKGDSRVA 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M +  +++P+YGF  H GYPTA H + +   G +  HR +F P+
Sbjct: 132 EISAASILAKVTRDREMEVLDQQFPEYGFAQHKGYPTAYHLEKLATLGATLHHRRSFAPV 191

Query: 205 RN 206
           + 
Sbjct: 192 KR 193


>gi|110834018|ref|YP_692877.1| ribonuclease H [Alcanivorax borkumensis SK2]
 gi|123149533|sp|Q0VQE3|RNH2_ALCBS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|110647129|emb|CAL16605.1| ribonuclease H [Alcanivorax borkumensis SK2]
          Length = 220

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/180 (49%), Positives = 111/180 (61%), Gaps = 2/180 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+ DSKKIS KKR  L  +I S A+  ++ 
Sbjct: 32  VAGVDEVGRGPLVGAVVTAAVILDPKYPIVGLADSKKISEKKRLALESEIKSHALGWALG 91

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L V   + LIDG  +P  L C A AV+KGD    
Sbjct: 92  RAESDEIDQLNILHATMLAMQRAVAALPVEAHAVLIDGNRVPA-LQCPAQAVVKGDGRVP 150

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKV RDR M   H +YP YGFD H GYPTA H   +++ G    HR +F P+
Sbjct: 151 AISAASILAKVARDREMYALHARYPQYGFDRHKGYPTAVHMAALEQHGALAEHRRSFGPV 210


>gi|15604075|ref|NP_220590.1| ribonuclease HII [Rickettsia prowazekii str. Madrid E]
 gi|7227932|sp|Q9ZDW3|RNH2_RICPR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|3860766|emb|CAA14667.1| RIBONUCLEASE HII (rnhB) [Rickettsia prowazekii]
 gi|292571798|gb|ADE29713.1| Ribonuclease HII [Rickettsia prowazekii Rp22]
          Length = 193

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/179 (48%), Positives = 117/179 (65%), Gaps = 2/179 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
           + VAG+DE GRG+L GPVV +A+I+D  +I  GI DSKK+S  KRE LYE+ITS+ + S 
Sbjct: 15  YIVAGVDEAGRGSLVGPVVASAVIIDKADIIPGIKDSKKLSKNKREILYERITSNYVWST 74

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +  +H  ID  NI +AT  A   AV NL + P+  L+DG     D+  +  ++I GD++S
Sbjct: 75  AIIAHTEIDNINILEATKKACAIAVANLSLKPQKILVDGNMKFSDI--RFISIINGDNLS 132

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           LSIAAASIIAKVTRDRLM     ++P Y +  + GY T +H + IK  G S  HR +F+
Sbjct: 133 LSIAAASIIAKVTRDRLMLELSAEFPQYLWHKNYGYGTREHIEAIKTHGLSSYHRRSFK 191


>gi|91788543|ref|YP_549495.1| ribonuclease HII [Polaromonas sp. JS666]
 gi|123164802|sp|Q12A45|RNH2_POLSJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|91697768|gb|ABE44597.1| RNase HII [Polaromonas sp. JS666]
          Length = 199

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/180 (47%), Positives = 120/180 (66%), Gaps = 2/180 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DE GRG L GPVV AA+ILD  N   G+ DSKK++ ++RE LY++I + A+  SI+
Sbjct: 16  LAGVDEAGRGPLMGPVVAAAVILDELNPIKGLADSKKLTPQRREALYDEIRAKALCCSIA 75

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A+ + ID+ NI +AT+ A+  AVE+L++ P   L+DG  +P  L   + AVI GD+I  
Sbjct: 76  LATAEEIDRLNILQATMLAMRRAVESLRLKPNKVLVDGNRLP-TLAIVSEAVIGGDAIVP 134

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKV RDR     H +YP YGF SH GY TA+H   ++E G    HR +F P+
Sbjct: 135 AISAASILAKVYRDRWCAEFHLEYPQYGFASHKGYSTAEHLAALREHGACPQHRRSFAPV 194


>gi|330719081|ref|ZP_08313681.1| ribonuclease HII [Leuconostoc fallax KCTC 3537]
          Length = 254

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 90/200 (45%), Positives = 122/200 (61%), Gaps = 3/200 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F++E     K +  VAGIDEVGRG LAGPVV AA+IL  +     + DSK++S  KR
Sbjct: 56  QKRFDIEKQYWAKGLVNVAGIDEVGRGPLAGPVVSAAVILPHDFNQVDVIDSKQLSADKR 115

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           + LY+ I + A+ I I     + ID  NI++A   A+  AV+ L +     LID   +  
Sbjct: 116 DRLYDVIMAEALAIGIGQVDAETIDAINIYQAARLAMTQAVQQLSIPVDGLLIDAMQLDL 175

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           DLP ++   IKGD+ S SI AASIIAKVTRDRLM    K+YP YGF  + GY T +H   
Sbjct: 176 DLPQESL--IKGDARSNSIGAASIIAKVTRDRLMAEYGKRYPAYGFQHNAGYGTKEHLVA 233

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           I+E G + +HR TF P++N+
Sbjct: 234 IEEYGITPLHRKTFAPIKNM 253


>gi|300724780|ref|YP_003714105.1| RNAse HII [Xenorhabdus nematophila ATCC 19061]
 gi|297631322|emb|CBJ92017.1| RNAse HII [Xenorhabdus nematophila ATCC 19061]
          Length = 196

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 115/182 (63%), Gaps = 4/182 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSKK++ K+RE LY +I   A+  S+ 
Sbjct: 11  IAGVDEVGRGPLVGDVVTAAVILDPAKPITGLMDSKKLTEKRREALYLEIKEKALCWSLG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            A  + ID+ NI  AT+ A+  AV  L ++P   LIDG   P   +P QA  V+KGDS+ 
Sbjct: 71  RAEPEEIDQLNILHATMLAMQRAVAGLVIVPDYVLIDGNRCPALAMPSQA--VVKGDSLV 128

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M     ++PDYGF  H GYPTA H + +   G +  HR +F P
Sbjct: 129 AEISAASILAKVTRDREMAELDNQFPDYGFAKHKGYPTALHLEKLALHGATAHHRKSFAP 188

Query: 204 LR 205
           ++
Sbjct: 189 VK 190


>gi|86605527|ref|YP_474290.1| ribonuclease HII [Synechococcus sp. JA-3-3Ab]
 gi|97189384|sp|Q2JW45|RNH2_SYNJA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|86554069|gb|ABC99027.1| ribonuclease HII [Synechococcus sp. JA-3-3Ab]
          Length = 221

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/204 (43%), Positives = 128/204 (62%), Gaps = 8/204 (3%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKIS 64
           +P  + E  + ++ M  VAG+DEVGRGALAGPVV AA+IL    DP  +  G+ D K++ 
Sbjct: 14  QPSLKWEGSLWQQGMRRVAGVDEVGRGALAGPVVAAAVILPAHLDPEALS-GVRDCKQLR 72

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
             +R    E+I   A+ + I SAS   ID+ NI +ATL A+  A+  +  +    L+DG 
Sbjct: 73  PPQRAHWAERIAQVALAVGIGSASAAEIDQLNIRQATLLAMQRALAQVGEV-EHILLDGL 131

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            + E L  +  A++KGD +SLSIAAASI+AKV RD LM+    +YP YG+ ++VGY T +
Sbjct: 132 PLAE-LGSRQTALVKGDQLSLSIAAASIVAKVWRDTLMQSWDHQYPGYGWRTNVGYGTQE 190

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H+  ++  GPS  HR +F PLR+L
Sbjct: 191 HRLALQRLGPSPQHRRSFAPLRDL 214


>gi|291524515|emb|CBK90102.1| Ribonuclease HII [Eubacterium rectale DSM 17629]
          Length = 253

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/177 (48%), Positives = 117/177 (66%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG LAGPVV  A+IL  +     INDSKK++  KR+ELY+ I   A+ + I 
Sbjct: 73  ICGIDEVGRGPLAGPVVACAVILPKDCDILYINDSKKLTAAKRDELYDVIMEKAVSVGIG 132

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            ASH+ ID+ NI +AT +A+  A+  L  +P   L D  +IP  +  +   +IKGD+ S+
Sbjct: 133 MASHERIDEINILQATYEAMRQAIGKLDPVPDLTLNDAVTIP-GVDIKQVPIIKGDAKSI 191

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SI AASI+AKVTRDR+M    + YP YGF S+ GY +A+H + +KE GPS IHR +F
Sbjct: 192 SIGAASIVAKVTRDRMMVEYDRIYPGYGFASNKGYGSAEHIKALKEIGPSPIHRASF 248


>gi|188533051|ref|YP_001906848.1| Ribonuclease HII [Erwinia tasmaniensis Et1/99]
 gi|238691983|sp|B2VHY0|RNH2_ERWT9 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|188028093|emb|CAO95950.1| Ribonuclease HII [Erwinia tasmaniensis Et1/99]
          Length = 207

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+ILDP+    G+ DSKK+S K+R  LY++I   A+  S+ 
Sbjct: 12  IAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLGDSKKLSEKRRLALYDEIKDKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L + P   LIDG   P  L   + AV+KGDS+  
Sbjct: 72  RAEPEEIDQLNILHATMLAMQRAVAGLHLSPDFVLIDGNRCPA-LAMPSRAVVKGDSLVP 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M     +YP YGF  H GYPTA H + + + G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDREMCELDLQYPQYGFARHKGYPTAVHVEKLAQFGATPQHRRSFAPV 190

Query: 205 RN 206
           RN
Sbjct: 191 RN 192


>gi|222054591|ref|YP_002536953.1| Ribonuclease H [Geobacter sp. FRC-32]
 gi|254807978|sp|B9M597|RNH2_GEOSF RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|221563880|gb|ACM19852.1| Ribonuclease H [Geobacter sp. FRC-32]
          Length = 216

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/203 (44%), Positives = 127/203 (62%), Gaps = 7/203 (3%)

Query: 8   ERPHF-ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISH 65
           E+P   E ++MVR +    +AG+DE GRG LAGPVV AA+IL P  I    ++DSKK++ 
Sbjct: 10  EKPTLLEFDSMVRCQGYASLAGVDEAGRGPLAGPVVAAAVIL-PAGIGLSEVDDSKKLTS 68

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
            KR+EL+E I ++A+ + +  +    ID+ NI +ATL A+  A+  L + P   L+DG S
Sbjct: 69  GKRDELFEVIMANALAVGVGLSDAGVIDRINILQATLAAMKEALSLLFIKPDYVLVDGIS 128

Query: 125 -IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            IP  +P +   + KGD  SLSIAAASI+AKV RDRLM     ++P YGF +H GY    
Sbjct: 129 KIPVTIPQKT--IKKGDGTSLSIAAASIVAKVHRDRLMVSYDAEFPQYGFAAHKGYGCVD 186

Query: 184 HQQVIKEKGPSCIHRLTFRPLRN 206
           H + I E GP  IHR+TF  ++ 
Sbjct: 187 HLKAIAEYGPCPIHRMTFSGVKE 209


>gi|325290406|ref|YP_004266587.1| RNase HII [Syntrophobotulus glycolicus DSM 8271]
 gi|324965807|gb|ADY56586.1| RNase HII [Syntrophobotulus glycolicus DSM 8271]
          Length = 227

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/194 (43%), Positives = 126/194 (64%), Gaps = 5/194 (2%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKI 75
           +V+E  M+ VAG+DE GRG LAGPV+ AA IL +  ++P+ +NDSKK++ ++RE+L+E+I
Sbjct: 29  LVKEGFMF-VAGVDEAGRGPLAGPVIAAACILPESFDLPY-LNDSKKLTARRREDLFERI 86

Query: 76  TSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
              A   +++    + ID+ NI  A+  A+  A+E L + P   L+DGR    D+ C+  
Sbjct: 87  KDQASAYAVAGVEAEEIDRMNILHASKLAMKKAIEALHIPPGYVLVDGRD-EIDIVCRQK 145

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
           AVI GD+    IAA SI+AKVTRDR+M   H  YP Y FD H GY T  H +++++ GP 
Sbjct: 146 AVIGGDAKCACIAAGSILAKVTRDRIMDDLHMLYPQYAFDKHKGYGTRLHFELLQKYGPC 205

Query: 195 CIHRLTFRPLRNLS 208
            IHR +F P++ L+
Sbjct: 206 PIHRYSFAPVKALA 219


>gi|167758983|ref|ZP_02431110.1| hypothetical protein CLOSCI_01329 [Clostridium scindens ATCC 35704]
 gi|167663390|gb|EDS07520.1| hypothetical protein CLOSCI_01329 [Clostridium scindens ATCC 35704]
          Length = 219

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/177 (50%), Positives = 114/177 (64%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84
           + GIDEVGRG LAGPVV  A+IL  +     +NDSKK+S KKRE LYE+I   A+ + I 
Sbjct: 39  ICGIDEVGRGPLAGPVVAGAVILPKDGSILYLNDSKKLSEKKREALYEEIMERAVATGIG 98

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
                 ID+ NI +AT +A+  A+ NL+V P   L D  +IP+ +  +   +IKGD+ S+
Sbjct: 99  IVGSARIDEINILQATYEAMRMAISNLKVEPDLLLNDAVTIPQ-VSIRQVPIIKGDAKSV 157

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SIAAASIIAKVTRDRLM    +  P YGF S+ GY T  H   ++E GPS IHR TF
Sbjct: 158 SIAAASIIAKVTRDRLMVEYDQVLPGYGFASNKGYGTKAHIAGLRELGPSPIHRATF 214


>gi|253687351|ref|YP_003016541.1| Ribonuclease H [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|259494070|sp|C6DAJ7|RNH2_PECCP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|251753929|gb|ACT12005.1| Ribonuclease H [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 198

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/182 (46%), Positives = 114/182 (62%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSK++S K+R  LY++I   A+  S+ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPTRPIVGLADSKQLSEKRRLALYDEIKEKALAWSLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L V+P   LIDG   P  LP  + AV+KGDS   
Sbjct: 73  RAEPEEIDQLNILHATMLAMQRAVAGLAVVPDFVLIDGNRCPA-LPMPSQAVVKGDSRVA 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M    +++P YGF  H GYPTA H + +   G +  HR +F P+
Sbjct: 132 EISAASIMAKVTRDREMVELDERFPAYGFAQHKGYPTAFHLEKLAALGATEFHRRSFAPV 191

Query: 205 RN 206
           + 
Sbjct: 192 KR 193


>gi|189499018|ref|YP_001958488.1| ribonuclease HII [Chlorobium phaeobacteroides BS1]
 gi|189494459|gb|ACE03007.1| Ribonuclease H [Chlorobium phaeobacteroides BS1]
          Length = 207

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/192 (45%), Positives = 109/192 (56%), Gaps = 9/192 (4%)

Query: 20  EKNMW----PVAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREEL 71
           E+  W     V GIDE GRG LAGPVV AA++      P  +  G+NDSK +  K+R  L
Sbjct: 9   EEKFWHEHTCVCGIDEAGRGPLAGPVVAAAVMFPRYFKPEGVLTGLNDSKTLRPKQRSAL 68

Query: 72  YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            E I S+A   SIS   H  ID  NI  AT+ A+  A E L+ +P   LIDG      LP
Sbjct: 69  AEAIQSAAECFSISIIDHTTIDSVNIFNATMLAMNAAAEKLEQLPGLLLIDGNRFVPSLP 128

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                ++KGD+  +SIAAASI+AK  RDR+M   H++YP+YGF  H GYPT  H   I  
Sbjct: 129 IPYLTIVKGDTKVVSIAAASILAKTCRDRIMNEYHREYPEYGFAQHFGYPTQAHIAAIAR 188

Query: 191 KGPSCIHRLTFR 202
            G   IHR +FR
Sbjct: 189 YGRCPIHRTSFR 200


>gi|323464643|gb|ADX76796.1| ribonuclease HII [Staphylococcus pseudintermedius ED99]
          Length = 261

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 117/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84
           + G+DEVGRG LAGPVV +A+IL P +   GINDSK++S  +R  L   +       ++ 
Sbjct: 76  ICGVDEVGRGPLAGPVVASAVILQPGHDFVGINDSKQLSVTQRNLLNTSLKEQVRAWAVG 135

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A+ + ID+HNI+ AT  A+Y A+ENL V P   LID  ++ + L     A+IKGD+ S+
Sbjct: 136 VATPEEIDEHNIYVATQIAMYRAIENLSVTPTHYLIDAMTL-DHLTAPQQAIIKGDAKSV 194

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASIIAKV RD LM    K+YP Y F  + GY T KH   +K+ G + IHR TF P+
Sbjct: 195 SIAAASIIAKVYRDDLMAEYAKQYPGYDFAQNAGYGTQKHLDGLKQYGVTTIHRKTFEPI 254

Query: 205 RNL 207
           +++
Sbjct: 255 KSM 257


>gi|283783967|ref|YP_003363832.1| ribonuclease HII [Citrobacter rodentium ICC168]
 gi|282947421|emb|CBG86966.1| ribonuclease HII [Citrobacter rodentium ICC168]
          Length = 198

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 110/182 (60%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  LY++I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALYQEIKEKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    IDK NI  AT+ A+  AV  L + P   LIDG   P  LP  + AV+KGDS   
Sbjct: 72  RAEPHEIDKLNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPA-LPVPSMAVVKGDSRVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H + +   G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMAALDSVFPQYGFAQHKGYPTAFHLEALAAHGATEHHRRSFGPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|319892260|ref|YP_004149135.1| Ribonuclease HII [Staphylococcus pseudintermedius HKU10-03]
 gi|317161956|gb|ADV05499.1| Ribonuclease HII [Staphylococcus pseudintermedius HKU10-03]
          Length = 261

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 117/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84
           + G+DEVGRG LAGPVV +A+IL P +   GINDSK++S  +R  L   +       ++ 
Sbjct: 76  ICGVDEVGRGPLAGPVVASAVILQPGHDFVGINDSKQLSVTQRNLLNTSLKEQVRAWAVG 135

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A+ + ID+HNI+ AT  A+Y A+ENL V P   LID  ++ + L     A+IKGD+ S+
Sbjct: 136 VATPEEIDEHNIYVATQIAMYRAIENLSVTPTHYLIDAMTL-DHLTAPQQAIIKGDAKSV 194

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASIIAKV RD LM    K+YP Y F  + GY T KH   +K+ G + IHR TF P+
Sbjct: 195 SIAAASIIAKVYRDDLMAEYAKQYPGYDFAQNAGYGTQKHLDGLKQYGVTTIHRKTFEPI 254

Query: 205 RNL 207
           +++
Sbjct: 255 KSM 257


>gi|229541107|ref|ZP_04430167.1| Ribonuclease H [Bacillus coagulans 36D1]
 gi|229325527|gb|EEN91202.1| Ribonuclease H [Bacillus coagulans 36D1]
          Length = 255

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/193 (43%), Positives = 120/193 (62%), Gaps = 2/193 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +R      +AGIDE GRG LAGPVV AA+IL  +    G+NDSK++S K+RE  + 
Sbjct: 59  FEDALRSHGCRLIAGIDEAGRGPLAGPVVAAAVILPEDFYLPGLNDSKQLSEKQREAFFA 118

Query: 74  KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           +I    ++ +  AS + ID+ NI++A   A+  A+ +L   P   LID   IP   P   
Sbjct: 119 RIQEETLVGVGFASAEEIDRMNIYEAAKKAMLAALGHLPAAPDHLLIDAMEIPASYPQT- 177

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            +++KGD+ S+SIAAAS++AKVTRDR M+   +KYP YGF  H GY T KH + + + GP
Sbjct: 178 -SIVKGDAKSISIAAASVVAKVTRDRYMQEMDEKYPGYGFAIHKGYGTKKHLEALMKLGP 236

Query: 194 SCIHRLTFRPLRN 206
             IHR +F P+++
Sbjct: 237 CPIHRKSFAPIKD 249


>gi|217961257|ref|YP_002339825.1| ribonuclease HII [Bacillus cereus AH187]
 gi|229197947|ref|ZP_04324662.1| Ribonuclease [Bacillus cereus m1293]
 gi|226736815|sp|B7HLH0|RNH2_BACC7 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|217062970|gb|ACJ77220.1| ribonuclease HII [Bacillus cereus AH187]
 gi|228585526|gb|EEK43629.1| Ribonuclease [Bacillus cereus m1293]
          Length = 257

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/194 (47%), Positives = 130/194 (67%), Gaps = 3/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y++
Sbjct: 63  ENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPKDFYIPGLNDSKKLSEAKRERFYDE 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I + AI I +   S Q ID+ NI++AT  A+  AV NL   P+  LID   +P  +P   
Sbjct: 123 IKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPTPIP--Q 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G 
Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHGI 240

Query: 194 SCIHRLTFRPLRNL 207
              HR +F P++++
Sbjct: 241 LEEHRKSFAPIKDM 254


>gi|157147385|ref|YP_001454704.1| ribonuclease HII [Citrobacter koseri ATCC BAA-895]
 gi|166225182|sp|A8ALA5|RNH2_CITK8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157084590|gb|ABV14268.1| hypothetical protein CKO_03183 [Citrobacter koseri ATCC BAA-895]
          Length = 198

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 110/182 (60%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  LY++I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALYDEIKEKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P  LP  + AV+KGDS   
Sbjct: 72  RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPA-LPVPSMAVVKGDSRVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKVTRD  M      +P YGF  H GYPTA H   + E G +  HR +F P+
Sbjct: 131 EISAASIIAKVTRDAEMAALDGIFPQYGFAQHKGYPTAFHLAALAEHGATEHHRRSFAPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|42782929|ref|NP_980176.1| ribonuclease HII [Bacillus cereus ATCC 10987]
 gi|222097282|ref|YP_002531339.1| ribonuclease hii [Bacillus cereus Q1]
 gi|73917595|sp|Q732N3|RNH2_BACC1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807967|sp|B9IVC6|RNH2_BACCQ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|42738856|gb|AAS42784.1| ribonuclease HII [Bacillus cereus ATCC 10987]
 gi|221241340|gb|ACM14050.1| ribonuclease HII [Bacillus cereus Q1]
          Length = 257

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/194 (47%), Positives = 130/194 (67%), Gaps = 3/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y++
Sbjct: 63  ENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYDE 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I + AI I +   S Q ID+ NI++AT  A+  AV NL   P+  LID   +P  +P   
Sbjct: 123 IKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPTPIP--Q 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G 
Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHGI 240

Query: 194 SCIHRLTFRPLRNL 207
              HR +F P++++
Sbjct: 241 LEEHRKSFAPIKDM 254


>gi|47570338|ref|ZP_00240983.1| ribonuclease HII [Bacillus cereus G9241]
 gi|47553003|gb|EAL11409.1| ribonuclease HII [Bacillus cereus G9241]
 gi|324327734|gb|ADY22994.1| ribonuclease HII [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 257

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/194 (47%), Positives = 130/194 (67%), Gaps = 3/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y++
Sbjct: 63  ENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYDE 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I + AI I +   S Q ID+ NI++AT  A+  AV NL   P+  LID   +P  +P   
Sbjct: 123 IKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPTPIP--Q 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G 
Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHGI 240

Query: 194 SCIHRLTFRPLRNL 207
              HR +F P++++
Sbjct: 241 LEEHRKSFAPIKDM 254


>gi|262369617|ref|ZP_06062945.1| ribonuclease HII [Acinetobacter johnsonii SH046]
 gi|262315685|gb|EEY96724.1| ribonuclease HII [Acinetobacter johnsonii SH046]
          Length = 192

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/183 (44%), Positives = 113/183 (61%), Gaps = 1/183 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           +AG DE GRG L G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I   A+    +
Sbjct: 3   IAGADEAGRGPLVGSVVAAAVILDPNNPIQGLNDSKKLTEKKREKLFVEIQEKALAWAIA 62

Query: 86  ASHQYI-DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            +     D+ NI +A+L A+  AVE L + P   L+DG  IP+ L     A++ GD++  
Sbjct: 63  EASAAEIDEINILQASLLAMRRAVEQLTIQPEHVLVDGNKIPQGLSMSCEAIVGGDALHA 122

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M    +KYP +GF  H GYPT  H + I E G    HR +F P+
Sbjct: 123 EISAASILAKVTRDHQMIEMDRKYPQFGFAKHKGYPTKAHFEAIAEHGVIDEHRRSFGPV 182

Query: 205 RNL 207
           + +
Sbjct: 183 KKV 185


>gi|301630622|ref|XP_002944415.1| PREDICTED: lipid-A-disaccharide synthase-like [Xenopus (Silurana)
           tropicalis]
          Length = 550

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/182 (46%), Positives = 120/182 (65%), Gaps = 4/182 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DE GRG LAGPVV AA+ILD      G+ DSKK+S  +RE L+++I + A+  SI+
Sbjct: 371 IAGVDEAGRGPLAGPVVAAAVILDAQRPIAGLADSKKLSPARREALFDEIHAHALCCSIA 430

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            AS + ID+ NI +ATL A+  AV+ L++ P   LIDG  +P  D+P +A  ++KGD+  
Sbjct: 431 EASVEEIDRLNILQATLLAMRRAVQGLRLQPAMVLIDGNRLPVLDVPAEA--IVKGDARV 488

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AKV RDR     H++YP YGF +H GY TA H   ++  G    HR TF P
Sbjct: 489 PAISAASILAKVQRDRWCMQLHERYPQYGFATHKGYGTAAHIAALRAHGACPEHRRTFAP 548

Query: 204 LR 205
           ++
Sbjct: 549 VK 550


>gi|253578396|ref|ZP_04855668.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850714|gb|EES78672.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 251

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/177 (48%), Positives = 118/177 (66%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG LAGPVV  A+IL  ++    +NDSKK+S  KREELY+ I   A+ + I 
Sbjct: 71  LCGIDEVGRGPLAGPVVACAVILPQDSRILYLNDSKKLSASKREELYDVIMREAVSVGIG 130

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S + ID+ NI +AT +A+  AV  L+V+P+  L D  +IP+ +      +IKGD+ S+
Sbjct: 131 MRSPERIDEINILQATYEAMREAVSKLEVVPQLLLNDAVTIPQ-ITIPQVPIIKGDAKSV 189

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SIAAASI+AKVTRDR+M    K +P+YGF S+ GY +A H   +K+ G + IHR TF
Sbjct: 190 SIAAASIVAKVTRDRMMEEYDKVFPEYGFASNKGYGSADHIAALKKYGETPIHRKTF 246


>gi|257869680|ref|ZP_05649333.1| ribonuclease HII [Enterococcus gallinarum EG2]
 gi|257803844|gb|EEV32666.1| ribonuclease HII [Enterococcus gallinarum EG2]
          Length = 257

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/194 (45%), Positives = 127/194 (65%), Gaps = 3/194 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  + +K +  VAG+DEVGRG LAGPVV AA++L  N    G+NDSK++S KKREEL+ 
Sbjct: 63  FEQELYQKGLRFVAGLDEVGRGPLAGPVVAAAVVLPKNCGIIGLNDSKQLSAKKREELFI 122

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I + A+ I I  A H+ ID+ NI++A+ +A+  A+ +L + P   L+D  ++  D+P  
Sbjct: 123 EIQNKAVAIGIGIADHEEIDRVNIYQASKNAMKRALADLSITPEHLLVDAMTLDTDIP-- 180

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SIAAASI+AKV RD LM+  H  +P YGFD + GY T  H + +   G
Sbjct: 181 QTSLIKGDARSISIAAASIMAKVFRDNLMKDYHGVFPHYGFDQNAGYGTKTHLEGLAAHG 240

Query: 193 PSCIHRLTFRPLRN 206
              IHR TF P++ 
Sbjct: 241 ICPIHRKTFAPVKQ 254


>gi|229019032|ref|ZP_04175873.1| Ribonuclease [Bacillus cereus AH1273]
 gi|229025278|ref|ZP_04181698.1| Ribonuclease [Bacillus cereus AH1272]
 gi|228736031|gb|EEL86606.1| Ribonuclease [Bacillus cereus AH1272]
 gi|228742272|gb|EEL92431.1| Ribonuclease [Bacillus cereus AH1273]
          Length = 255

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/194 (48%), Positives = 127/194 (65%), Gaps = 3/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +REK +  +AGIDEVGRG LAGPVV AA++L       G+NDSKK+S  KRE  Y++
Sbjct: 63  EHALREKGIMYIAGIDEVGRGPLAGPVVTAAVVLPEEFYIPGLNDSKKLSEAKRERFYDE 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI I +   S Q ID+ NI++AT  A+  AV NL   P   LID   +P  +P   
Sbjct: 123 IKEHAIAIGVGIVSPQIIDEINIYQATKQAMLDAVANLSCTPEYLLIDAMKLPTSIP--Q 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++IKGD+ S+SI+AASIIAKVTRDR+M+   KKYP YGF+ H+GY T +H + I+  G 
Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGKKYPAYGFEQHMGYGTKQHLEAIESHGV 240

Query: 194 SCIHRLTFRPLRNL 207
              HR +F P++++
Sbjct: 241 LEEHRKSFAPIKDM 254


>gi|77165488|ref|YP_344013.1| ribonuclease H [Nitrosococcus oceani ATCC 19707]
 gi|254433570|ref|ZP_05047078.1| ribonuclease HII [Nitrosococcus oceani AFC27]
 gi|97189090|sp|Q3J9L3|RNH2_NITOC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|76883802|gb|ABA58483.1| RNase HII [Nitrosococcus oceani ATCC 19707]
 gi|207089903|gb|EDZ67174.1| ribonuclease HII [Nitrosococcus oceani AFC27]
          Length = 201

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/183 (44%), Positives = 110/183 (60%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG LAGPV+  A+ILDP     G+ DSK+++   RE L   I + A+  ++ 
Sbjct: 17  VAGVDEVGRGPLAGPVIAGAVILDPECPISGVKDSKQLTAPARERLAALIQAQAVAWALG 76

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI +A+L A+  A+  L V+P   L+DG+  P  + C   A++KGD   +
Sbjct: 77  RAEAAEIDQFNILQASLLAMERAISALSVVPDLVLVDGKHCPPTV-CPVRAIVKGDQQIM 135

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I AASI+AKV RD  M    + YP YGF  H GYPT  H   +K  GP  IHR +FRP+
Sbjct: 136 AIGAASIVAKVARDAEMIAFEESYPGYGFGIHKGYPTRAHLAALKALGPCSIHRRSFRPV 195

Query: 205 RNL 207
           R  
Sbjct: 196 RRF 198


>gi|261338819|ref|ZP_05966677.1| hypothetical protein ENTCAN_05014 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318642|gb|EFC57580.1| ribonuclease HII [Enterobacter cancerogenus ATCC 35316]
          Length = 198

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 112/182 (61%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L+++I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALFDEIQEKALAWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L++ P   LIDG   P  LP  + AV+KGDS   
Sbjct: 72  RAEPHEIDELNILHATMLAMQRAVAGLKITPEYVLIDGNRCPA-LPVPSMAVVKGDSRVP 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKVTRD  M      YP YGF  H GYPTA H + + E G +  HR +F P+
Sbjct: 131 EISAASIIAKVTRDAEMAALDLTYPLYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|326693008|ref|ZP_08230013.1| ribonuclease HII [Leuconostoc argentinum KCTC 3773]
          Length = 258

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/200 (43%), Positives = 121/200 (60%), Gaps = 3/200 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F  EA    + +  VAG+DEVGRG LAGPVV AA+IL  +     + DSK++S K R
Sbjct: 56  KTRFTFEAQQWAQGLSHVAGVDEVGRGPLAGPVVAAAVILPHDFAELDVIDSKQLSEKMR 115

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E+L+++I + A+ I I       ID  NI++A   A+  AV  L   P   LID  ++  
Sbjct: 116 EQLFDRIIAQALSIGIGVVDATVIDDINIYEAARLAMTQAVAELAPEPDYLLIDAMTLQT 175

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           D+P    ++IKGD+ S SIAAASIIAKVTRDR+M    ++YP YGF  H GY T  H   
Sbjct: 176 DIPQ--LSLIKGDARSNSIAAASIIAKVTRDRMMADYDRQYPGYGFAQHAGYGTKAHLAA 233

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           + E G + IHR +F P++++
Sbjct: 234 LAELGVTPIHRRSFAPVKSV 253


>gi|148656899|ref|YP_001277104.1| ribonuclease HII [Roseiflexus sp. RS-1]
 gi|189043651|sp|A5UX01|RNH2_ROSS1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|148569009|gb|ABQ91154.1| Ribonuclease H [Roseiflexus sp. RS-1]
          Length = 227

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 121/201 (60%), Gaps = 7/201 (3%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-----DPNNIPFGINDSKKIS 64
           P  E E  +R      +AG+DE GRG LAGPVV AA+IL     D  ++  G+ DSK +S
Sbjct: 6   PTVEEERALRAAGYRAIAGLDEAGRGCLAGPVVAAAVILPDAVIDTPDVLDGVADSKMLS 65

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
             +R +L+E+ITS A+  ++ +     ID H I  AT  A+  A+  L     + LID  
Sbjct: 66  PAQRADLFERITSLAVAWAVGATPAHIIDSHGILPATRLAMQVALLRLPRPADALLIDAV 125

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           ++ ++ P    A+IKGD+  LSIAAASIIAKVTRDRLM      +P YGF SH GY T +
Sbjct: 126 TL-DNWPLPQRALIKGDARCLSIAAASIIAKVTRDRLMDALDACWPQYGFASHKGYGTVQ 184

Query: 184 HQQVIKEKGPSCIHRLTFRPL 204
           HQQ ++  GP+  HR TFRPL
Sbjct: 185 HQQALRRYGPTPHHRRTFRPL 205


>gi|189043611|sp|A7H722|RNH2_ANADF RecName: Full=Ribonuclease HII; Short=RNase HII
          Length = 315

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/193 (44%), Positives = 119/193 (61%), Gaps = 7/193 (3%)

Query: 20  EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +W      VAG+DE G   LAGPVV  A IL  +  P GI+DSK++  ++RE L E 
Sbjct: 69  EGELWDGGVTLVAGVDEAGMAPLAGPVVAGACILPRDYRPRGIDDSKQLDRRERERLAED 128

Query: 75  ITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I ++A+  +++ A  + ID+ NI++A L A+  AV+ L   P   L+D R +PE L    
Sbjct: 129 IKANAVCWAVARAEVEEIDRLNIYRAGLLALTRAVQALTPAPGHVLVDARKLPE-LRLPQ 187

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +I GD++SL+IAAASI+AK TRD LM      YP YGF +H GYPTA+H Q ++  G 
Sbjct: 188 TPIIHGDALSLTIAAASILAKTTRDELMGELDALYPGYGFCNHKGYPTAEHFQALERLGA 247

Query: 194 SCIHRLTFRPLRN 206
             IHR +F+P+R 
Sbjct: 248 CPIHRRSFQPVRE 260


>gi|298245602|ref|ZP_06969408.1| Ribonuclease H [Ktedonobacter racemifer DSM 44963]
 gi|297553083|gb|EFH86948.1| Ribonuclease H [Ktedonobacter racemifer DSM 44963]
          Length = 223

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/206 (41%), Positives = 124/206 (60%), Gaps = 9/206 (4%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPF-----GINDSKK 62
           P    E  + E+    +AG+DE GRG LAGPVV AA+IL  + N  P      G+NDSK+
Sbjct: 9   PTLTEEMALFEQGYCFIAGLDEAGRGCLAGPVVAAAVILPLESNPTPVLARFTGVNDSKQ 68

Query: 63  ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           ++   RE LY+ I   A+ + +   S + ID+ NI +ATL ++  A+  L    ++ L+D
Sbjct: 69  LNEATRERLYDVIMEHALAVGVGIGSVELIDQRNILQATLQSMRVALTQLTPTAQALLLD 128

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
              +  D+P    ++ KGDS  LSIAAASIIAKVTRDRLM   H+++P YGF  H GY T
Sbjct: 129 AVRL-RDIPLPQLSLTKGDSRCLSIAAASIIAKVTRDRLMHQLHEEFPRYGFKQHKGYGT 187

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207
            +H + +K+ G +  HR +F P+R +
Sbjct: 188 PEHLEALKQFGVTPHHRRSFSPIREM 213


>gi|312796258|ref|YP_004029180.1| ribonuclease HII [Burkholderia rhizoxinica HKI 454]
 gi|312168033|emb|CBW75036.1| Ribonuclease HII (EC 3.1.26.4) [Burkholderia rhizoxinica HKI 454]
          Length = 232

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/183 (45%), Positives = 118/183 (64%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII-SI 83
           V G+DE GRG LAGPVV AA+ILDP      G++DSK +S   RE+L+++I   ++   +
Sbjct: 31  VCGVDEAGRGPLAGPVVAAAVILDPAAPRIRGLDDSKALSPATREKLFDRIVERSLAYCV 90

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS + ID  NI  AT+ A+  AV+ L + P    +DG   P  L  ++ AVI GD++ 
Sbjct: 91  ASASVEEIDTLNILHATMLAMQRAVQGLALTPALVKVDGNRCPV-LSVRSEAVIGGDALV 149

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR+M   H ++P YGFD+HVGY T +H   ++  GP   HR +F P
Sbjct: 150 PSISAASILAKVTRDRMMHALHDEFPHYGFDAHVGYGTPRHLAALRIHGPCVHHRRSFAP 209

Query: 204 LRN 206
           +R 
Sbjct: 210 VRK 212


>gi|291527941|emb|CBK93527.1| Ribonuclease HII [Eubacterium rectale M104/1]
          Length = 253

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/177 (48%), Positives = 117/177 (66%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG LAGPVV  A+IL  +     INDSKK++  KR+ELY+ I   A+ + I 
Sbjct: 73  ICGIDEVGRGPLAGPVVACAVILPKDCDILYINDSKKLTAAKRDELYDVIMEKAVSVGIG 132

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            ASH+ ID+ NI +AT +A+  A++ L   P   L D  +IP  +  +   +IKGD+ S+
Sbjct: 133 MASHERIDEINILQATYEAMRQAIKKLDPAPDLTLNDAVTIP-GVDIKQVPIIKGDAKSI 191

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SI AASI+AKVTRDR+M    + YP YGF S+ GY +A+H + +KE GPS IHR +F
Sbjct: 192 SIGAASIVAKVTRDRMMVEYDRIYPGYGFASNKGYGSAEHIKALKEIGPSQIHRASF 248


>gi|319793969|ref|YP_004155609.1| ribonuclease h [Variovorax paradoxus EPS]
 gi|315596432|gb|ADU37498.1| Ribonuclease H [Variovorax paradoxus EPS]
          Length = 238

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 82/180 (45%), Positives = 118/180 (65%), Gaps = 2/180 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DE GRG LAGPVV AA+ILD      G+ DSK ++  +RE L+++I + A+  SI+
Sbjct: 22  LAGVDEAGRGPLAGPVVAAAVILDDTRPIRGLADSKTLTALQRERLHDQILAKALCCSIA 81

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID HNI +AT+ A+  AVE L++ P   L+DG  +P  L   A AV+KGD++  
Sbjct: 82  QASVEEIDTHNILQATMIAMRRAVEGLRLKPAKVLVDGNRLP-TLDVLAEAVVKGDALVK 140

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKV RDRL    H ++P YGF  H GY T +H + +++ G    HR +F P+
Sbjct: 141 AISAASILAKVHRDRLCEQLHTEFPHYGFAGHKGYGTPEHLEALQKHGACVHHRRSFSPV 200


>gi|153003177|ref|YP_001377502.1| ribonuclease HII [Anaeromyxobacter sp. Fw109-5]
 gi|152026750|gb|ABS24518.1| Ribonuclease H [Anaeromyxobacter sp. Fw109-5]
          Length = 338

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 85/193 (44%), Positives = 119/193 (61%), Gaps = 7/193 (3%)

Query: 20  EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +W      VAG+DE G   LAGPVV  A IL  +  P GI+DSK++  ++RE L E 
Sbjct: 92  EGELWDGGVTLVAGVDEAGMAPLAGPVVAGACILPRDYRPRGIDDSKQLDRRERERLAED 151

Query: 75  ITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I ++A+  +++ A  + ID+ NI++A L A+  AV+ L   P   L+D R +PE L    
Sbjct: 152 IKANAVCWAVARAEVEEIDRLNIYRAGLLALTRAVQALTPAPGHVLVDARKLPE-LRLPQ 210

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +I GD++SL+IAAASI+AK TRD LM      YP YGF +H GYPTA+H Q ++  G 
Sbjct: 211 TPIIHGDALSLTIAAASILAKTTRDELMGELDALYPGYGFCNHKGYPTAEHFQALERLGA 270

Query: 194 SCIHRLTFRPLRN 206
             IHR +F+P+R 
Sbjct: 271 CPIHRRSFQPVRE 283


>gi|52141651|ref|YP_085178.1| ribonuclease HII [Bacillus cereus E33L]
 gi|81686573|sp|Q636I9|RNH2_BACCZ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|51975120|gb|AAU16670.1| ribonuclease HII (RNase HII) [Bacillus cereus E33L]
          Length = 257

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/194 (48%), Positives = 129/194 (66%), Gaps = 3/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +REK +  +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S  KRE  Y++
Sbjct: 63  ENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYDE 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I + AI I +   S Q ID+ NI++AT  A+  AV NL   P   LID   +P  +P   
Sbjct: 123 IKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPEYLLIDAMKLPTPIP--Q 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G 
Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEVHGV 240

Query: 194 SCIHRLTFRPLRNL 207
              HR +F P++++
Sbjct: 241 LEEHRKSFAPIKDM 254


>gi|303231457|ref|ZP_07318188.1| ribonuclease HII [Veillonella atypica ACS-049-V-Sch6]
 gi|302513894|gb|EFL55905.1| ribonuclease HII [Veillonella atypica ACS-049-V-Sch6]
          Length = 266

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 87/197 (44%), Positives = 132/197 (67%), Gaps = 2/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           ++ E M  ++ ++ VAG+DEVGRG +AGPV VAA+IL P  +  G+NDSKK++ +KRE L
Sbjct: 63  YDYEGMFYDEGLYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREVL 122

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I   A+ +S  S   + ID+ NI++AT  A+Y A+  L V   + + D   +P DL 
Sbjct: 123 YDIIMEEAVAVSCISYGPEKIDELNIYEATRQAMYEAIRTLDVPAEAVVADAMKLP-DLT 181

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGDS S +IAAASIIAKVTRDR M+   ++YP YGF  H GY T  H++ +++
Sbjct: 182 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDEEYPGYGFGIHKGYYTELHKEAVEQ 241

Query: 191 KGPSCIHRLTFRPLRNL 207
           +G + +HR +F P++++
Sbjct: 242 QGVTPLHRKSFEPIKSI 258


>gi|254508672|ref|ZP_05120787.1| ribonuclease HII [Vibrio parahaemolyticus 16]
 gi|219548429|gb|EED25439.1| ribonuclease HII [Vibrio parahaemolyticus 16]
          Length = 205

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/201 (45%), Positives = 119/201 (59%), Gaps = 12/201 (5%)

Query: 17  MVREKNMWP----------VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           M +EK   P          VAG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S K
Sbjct: 1   MAKEKQELPPFEYPQGYQHVAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEK 60

Query: 67  KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           KR  L  +I   A+  S+   +   ID+ NI +AT+ A+  A+  L+V P  ALIDG   
Sbjct: 61  KRLALLPEIQEKALAWSVGRCTPAEIDELNILQATMVAMQRAIAGLKVQPDLALIDGNRC 120

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  LP  A AV+KGD     I+AASIIAKV RD+ M    K +P++GF  H GYPT  H 
Sbjct: 121 PA-LPMDAQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKLHPEFGFAKHKGYPTKAHF 179

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
           + I+  G    HR +F+P++ 
Sbjct: 180 EAIEAHGVIDQHRKSFKPVKK 200


>gi|242240382|ref|YP_002988563.1| ribonuclease HII [Dickeya dadantii Ech703]
 gi|242132439|gb|ACS86741.1| Ribonuclease H [Dickeya dadantii Ech703]
          Length = 198

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 86/183 (46%), Positives = 113/183 (61%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSK++S K+R  LY++I   A   S+ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPAKPIAGLADSKQLSEKRRRVLYDEIREKARAWSLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L V P   LIDG   P  LP  + AV+KGDS   
Sbjct: 73  RAEPEEIDQLNILHATMLAMQRAVAGLPVTPDYVLIDGNRCP-SLPMPSMAVVKGDSRVA 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M    K +P+YGF  H GYPTA H + +   G +  HR +F P+
Sbjct: 132 EISAASILAKVTRDREMEELDKLFPEYGFAQHKGYPTAYHLEKLATLGATLHHRRSFAPV 191

Query: 205 RNL 207
           + +
Sbjct: 192 KRV 194


>gi|184155373|ref|YP_001843713.1| ribonuclease HII [Lactobacillus fermentum IFO 3956]
 gi|238692975|sp|B2GC51|RNH2_LACF3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|183226717|dbj|BAG27233.1| ribonuclease HII [Lactobacillus fermentum IFO 3956]
 gi|299783202|gb|ADJ41200.1| Ribonuclease HII (RNase HII) [Lactobacillus fermentum CECT 5716]
          Length = 256

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 84/191 (43%), Positives = 119/191 (62%), Gaps = 8/191 (4%)

Query: 20  EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +W      VAGIDEVGRG LAGPVV  A++LD      G+ DSK++S  +RE+LY +
Sbjct: 63  ENQLWQAGHQYVAGIDEVGRGPLAGPVVTCAVVLDSQFDLVGVTDSKQLSRHEREQLYLR 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   A+ +S++ +  Q ID+ NI+ AT  A+  +V+ L   P   ++D  ++P D+P   
Sbjct: 123 ILDEAVEVSLAVSPAQEIDRLNIYAATQTAMIRSVKALHHQPSHLIVD--AVPLDIPVPQ 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGD  S+S+AAASI+AK  RD LM I  + YP YGF  ++GY TA H   +++ G 
Sbjct: 181 TTLIKGDQKSISVAAASIVAKEYRDHLMAIYDRLYPGYGFKDNMGYGTAAHLAGLEQLGA 240

Query: 194 SCIHRLTFRPL 204
             IHR TFRP+
Sbjct: 241 CPIHRRTFRPV 251


>gi|218961310|ref|YP_001741085.1| ribonuclease HII [Candidatus Cloacamonas acidaminovorans]
 gi|167729967|emb|CAO80879.1| ribonuclease HII [Candidatus Cloacamonas acidaminovorans]
          Length = 204

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/177 (54%), Positives = 118/177 (66%), Gaps = 1/177 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AGIDE GRGALAGPVV AA+IL+ N +  GINDSK ++ KKREELY +I  SAI  SI  
Sbjct: 21  AGIDEAGRGALAGPVVTAAVILNYNTLIEGINDSKLLTPKKREELYWQIVESAIDYSIVE 80

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S  YID++NI +ATL     A   L+  PR  LIDGR I  +L   A A+IKGD +  S
Sbjct: 81  ISPAYIDRYNILRATLLGFKKAFFQLKSKPRYCLIDGRDIHSELKPYAKAIIKGDQLYAS 140

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           IAAASI+AKV RD+LM      YP+YGF S+ GY TA H ++I   G S IHR +F+
Sbjct: 141 IAAASILAKVHRDKLMLAYDDIYPEYGFASNKGYGTAYHAKMICSYGLSPIHRKSFK 197


>gi|153831009|ref|ZP_01983676.1| ribonuclease HII [Vibrio cholerae 623-39]
 gi|148873517|gb|EDL71652.1| ribonuclease HII [Vibrio cholerae 623-39]
          Length = 180

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 88/178 (49%), Positives = 111/178 (62%), Gaps = 7/178 (3%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E P FE+ A         +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S KK
Sbjct: 8   ELPPFEIPA-----GYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSEKK 62

Query: 68  REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L+ +I   A+  ++   S Q ID+ NI +AT+ A+  AV  L++ P   LIDG  IP
Sbjct: 63  RLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNKIP 122

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           + LP  A AV+KGD     I+AASIIAKV RD+ M    K+YP +GF  H GYPTA H
Sbjct: 123 K-LPMAAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179


>gi|153854846|ref|ZP_01996069.1| hypothetical protein DORLON_02074 [Dorea longicatena DSM 13814]
 gi|149752548|gb|EDM62479.1| hypothetical protein DORLON_02074 [Dorea longicatena DSM 13814]
          Length = 194

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/177 (51%), Positives = 115/177 (64%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84
           + GIDEVGRG  AGPVV  A+IL  ++    +NDSKK+S KKRE LY++I   A+ + I 
Sbjct: 14  ICGIDEVGRGPFAGPVVAGAVILPKDDPILYLNDSKKLSEKKREALYDEIMERAVATGIG 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S   ID+ NI +AT +A+  A+ NL+V P   L D  +IPE +      +IKGD+ S+
Sbjct: 74  VVSPARIDEINILQATYEAMRMAIGNLKVQPDLLLNDAVTIPE-VEIPQVPIIKGDAKSV 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SIAAASIIAKVTRDRLM    K  P Y F S+ GY T KH + +KE GPS IHR TF
Sbjct: 133 SIAAASIIAKVTRDRLMVEYDKVLPGYDFASNKGYGTKKHIEGLKELGPSPIHRRTF 189


>gi|228928885|ref|ZP_04091917.1| Ribonuclease [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|229092879|ref|ZP_04224013.1| Ribonuclease [Bacillus cereus Rock3-42]
 gi|228690501|gb|EEL44284.1| Ribonuclease [Bacillus cereus Rock3-42]
 gi|228830692|gb|EEM76297.1| Ribonuclease [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 257

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 93/194 (47%), Positives = 129/194 (66%), Gaps = 3/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +REK +  +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S  KRE  Y++
Sbjct: 63  ENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYDE 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I + AI I +   S Q ID+ NI++AT  A+  A+ NL   P   LID   +P  +P   
Sbjct: 123 IKAKAIAIGVGIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPTPIP--Q 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G 
Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHGV 240

Query: 194 SCIHRLTFRPLRNL 207
              HR +F P++++
Sbjct: 241 LEEHRKSFAPIKDM 254


>gi|86609281|ref|YP_478043.1| ribonuclease HII [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|97189393|sp|Q2JKK9|RNH2_SYNJB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|86557823|gb|ABD02780.1| ribonuclease HII [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 213

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 88/206 (42%), Positives = 129/206 (62%), Gaps = 8/206 (3%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKIS 64
           RP    E  + ++ +  VAG+DEVGRGALAGPVV AA+IL    DP  +  G+ DSK++ 
Sbjct: 6   RPSLIWEGSLWQQGILRVAGVDEVGRGALAGPVVAAAVILPAQMDPKELE-GVRDSKQLR 64

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            ++R +  E+I   A+ + + SAS   ID+ NI +AT+ A+  A+  L  I    L+DG 
Sbjct: 65  PQQRAQWAERIRQVALAVGVGSASAAEIDRLNIRQATVLAMQRALAKLDPI-EHILLDGL 123

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            + E L  +  A++KGD ISLSIAAAS++AKV RD LM+   ++YP YG+ ++ GY T +
Sbjct: 124 PLAE-LGSRQTALVKGDHISLSIAAASVVAKVWRDALMQSWDRQYPGYGWRTNAGYGTRE 182

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLSV 209
           H+  ++  GP+  HR +F PL  L V
Sbjct: 183 HRLALQNLGPTPQHRRSFAPLAELKV 208


>gi|62178800|ref|YP_215217.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161612603|ref|YP_001586568.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167553356|ref|ZP_02347105.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|168235010|ref|ZP_02660068.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168264638|ref|ZP_02686611.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|168464205|ref|ZP_02698108.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168823100|ref|ZP_02835100.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194734669|ref|YP_002113253.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197249555|ref|YP_002145235.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|204926664|ref|ZP_03217866.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205351567|ref|YP_002225368.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|224582078|ref|YP_002635876.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|73917832|sp|Q57T25|RNH2_SALCH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|189043655|sp|A9N0T3|RNH2_SALPB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238689765|sp|B4TYE3|RNH2_SALSV RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238690066|sp|B5F8U4|RNH2_SALA4 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238690468|sp|B5R5I6|RNH2_SALG2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807986|sp|C0Q6K6|RNH2_SALPC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|62126433|gb|AAX64136.1| RNAse HII [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. SC-B67]
 gi|161361967|gb|ABX65735.1| hypothetical protein SPAB_00294 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194710171|gb|ACF89392.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195632881|gb|EDX51335.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197213258|gb|ACH50655.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197291997|gb|EDY31347.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204323329|gb|EDZ08524.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205271348|emb|CAR36141.1| Ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205322169|gb|EDZ10008.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205340607|gb|EDZ27371.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205346925|gb|EDZ33556.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|224466605|gb|ACN44435.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|320084484|emb|CBY94277.1| RNAse HII [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|322616054|gb|EFY12971.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322620837|gb|EFY17697.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322623812|gb|EFY20649.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322627260|gb|EFY24051.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322630567|gb|EFY27331.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322638215|gb|EFY34916.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640700|gb|EFY37351.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322645516|gb|EFY42043.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322648190|gb|EFY44657.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322657141|gb|EFY53424.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322657511|gb|EFY53783.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322663831|gb|EFY60031.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322666664|gb|EFY62842.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322672178|gb|EFY68290.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322676511|gb|EFY72582.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322679397|gb|EFY75442.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322686276|gb|EFY82260.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|322713254|gb|EFZ04825.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323193456|gb|EFZ78664.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323197522|gb|EFZ82657.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323201209|gb|EFZ86278.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323209604|gb|EFZ94537.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323212144|gb|EFZ96968.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323216449|gb|EGA01175.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323223361|gb|EGA07696.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225922|gb|EGA10142.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323228537|gb|EGA12666.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236850|gb|EGA20926.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323239650|gb|EGA23697.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323242303|gb|EGA26332.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249965|gb|EGA33861.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323252395|gb|EGA36246.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323255678|gb|EGA39431.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323262885|gb|EGA46435.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323265371|gb|EGA48867.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323271842|gb|EGA55260.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326626594|gb|EGE32937.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 198

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 111/182 (60%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  LY++I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLSLYDEIKEKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P  LP  + AV+KGDS   
Sbjct: 72  RAEAHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPA-LPVPSMAVVKGDSRVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + + G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAQYGATAHHRRSFAPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|289423531|ref|ZP_06425332.1| ribonuclease HII [Peptostreptococcus anaerobius 653-L]
 gi|289156033|gb|EFD04697.1| ribonuclease HII [Peptostreptococcus anaerobius 653-L]
          Length = 266

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 93/183 (50%), Positives = 112/183 (61%), Gaps = 4/183 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAGIDEVGRG LAGPVV A +IL       GINDSKKI  KKREELY+ I   A+   I 
Sbjct: 83  VAGIDEVGRGPLAGPVVAAVVILKKGTKIRGINDSKKIPEKKREELYDLILDQALDYGIG 142

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID+HNI  AT  A+  A++ L+  P   L D   IP  +      +IKGDS S+
Sbjct: 143 MASPSEIDEHNILNATYIAMRRAIDKLKYRPDCLLNDAVRIP-GVDIHQVPIIKGDSKSI 201

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI AASI+AKVTRDR+M    K+YP Y F S+ GY T +H   I+ KG   IHR +F  L
Sbjct: 202 SIGAASIVAKVTRDRMMYDYDKEYPGYNFSSNKGYGTNEHYDGIRAKGKCPIHRESF--L 259

Query: 205 RNL 207
           +N 
Sbjct: 260 KNF 262


>gi|227515157|ref|ZP_03945206.1| ribonuclease H [Lactobacillus fermentum ATCC 14931]
 gi|227086489|gb|EEI21801.1| ribonuclease H [Lactobacillus fermentum ATCC 14931]
          Length = 256

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 84/191 (43%), Positives = 119/191 (62%), Gaps = 8/191 (4%)

Query: 20  EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +W      VAGIDEVGRG LAGPVV  A++LD      G+ DSK++S  +RE+LY +
Sbjct: 63  ENQLWQAGHQYVAGIDEVGRGPLAGPVVTCAVVLDSQFDLVGVTDSKQLSRHEREQLYLR 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   A+ +S++ +  Q ID+ NI+ AT  A+  +V+ L   P   ++D  ++P D+P   
Sbjct: 123 ILDEAVEVSLAVSPAQEIDRLNIYAATQAAMIRSVKALHHQPSHLIVD--AVPLDIPVPQ 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGD  S+S+AAASI+AK  RD LM I  + YP YGF  ++GY TA H   +++ G 
Sbjct: 181 TTLIKGDQKSISVAAASIVAKEYRDHLMAIYDRLYPGYGFKDNMGYGTAAHLAGLEQLGA 240

Query: 194 SCIHRLTFRPL 204
             IHR TFRP+
Sbjct: 241 CPIHRRTFRPV 251


>gi|331002666|ref|ZP_08326181.1| ribonuclease HII [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330407079|gb|EGG86583.1| ribonuclease HII [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 214

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/195 (47%), Positives = 126/195 (64%), Gaps = 10/195 (5%)

Query: 14  LEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKK 67
           LE M   +N +     +AG+DE GRG LAGPVV AA+IL P +I  PF +NDSKK++ K+
Sbjct: 16  LEGMREFENKYSDLAYIAGLDEAGRGPLAGPVVAAAVIL-PKDIFLPF-LNDSKKVTEKR 73

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R+ L+++I  +AI   I  AS+  ID+ NI +AT +A+  A+  L   P   L+D   IP
Sbjct: 74  RDVLFDEIKQNAIAYGIGIASNTLIDEINILQATYEAMREAINALSTRPDILLVDAIHIP 133

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             +  +   ++KGD+ S++IAAASI+AKVTRDRLM    K YP+YGF S+ GY TA H  
Sbjct: 134 -GIDIRQVGIVKGDAKSVNIAAASILAKVTRDRLMAEYDKIYPEYGFASNKGYGTAAHIA 192

Query: 187 VIKEKGPSCIHRLTF 201
            +KE GP  IHR +F
Sbjct: 193 ALKEYGPCEIHRKSF 207


>gi|152979547|ref|YP_001345176.1| ribonuclease HII [Actinobacillus succinogenes 130Z]
 gi|171704350|sp|A6VQJ4|RNH2_ACTSZ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|150841270|gb|ABR75241.1| Ribonuclease H [Actinobacillus succinogenes 130Z]
          Length = 202

 Score =  152 bits (383), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 115/183 (62%), Gaps = 4/183 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L  +I   A+  S+ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPNNPISGLADSKKLSEKKRLVLAAEIKEKALAWSLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            A  + ID+ NI  AT+ A+  AV++L+++P   L+DG  +PE D+P QA  +IKGD   
Sbjct: 73  RAEAEEIDELNILHATMLAMRRAVKSLKILPHLVLVDGNRVPELDMPAQA--IIKGDGKV 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKV RD+ M    K++P Y F  H GYPT  H + +   G    HR +F P
Sbjct: 131 AEISAASILAKVARDQEMETLDKQFPQYEFAKHKGYPTKVHLEKLMRFGALPQHRRSFAP 190

Query: 204 LRN 206
           +R 
Sbjct: 191 VRK 193


>gi|307824003|ref|ZP_07654230.1| Ribonuclease H [Methylobacter tundripaludum SV96]
 gi|307734787|gb|EFO05637.1| Ribonuclease H [Methylobacter tundripaludum SV96]
          Length = 203

 Score =  152 bits (383), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 86/186 (46%), Positives = 117/186 (62%), Gaps = 4/186 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DE GRG LAGPV  AA+ILDP     G+ DSK +S  KR  LY  I  +A+  SI+
Sbjct: 15  VAGVDEAGRGPLAGPVFAAAVILDPMRPIAGLADSKILSESKRNSLYIIIKEAALSWSIA 74

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            A    ID  NI +ATL A+  AVE L + P   L+DG  +P+  +P QA  ++KGDS  
Sbjct: 75  QAGVDEIDGLNILQATLLAMQRAVEGLNIQPDEVLVDGNRLPKLSMPAQA--IVKGDSKV 132

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AKV RD+LM   H++YPD+ F  H GY T +H   I++ G   +HR TF P
Sbjct: 133 QAISAASILAKVERDKLMVDYHQQYPDFAFHVHKGYGTKQHLAEIEQFGFLAVHRRTFNP 192

Query: 204 LRNLSV 209
           ++ + +
Sbjct: 193 VKTMLI 198


>gi|292492827|ref|YP_003528266.1| ribonuclease H [Nitrosococcus halophilus Nc4]
 gi|291581422|gb|ADE15879.1| Ribonuclease H [Nitrosococcus halophilus Nc4]
          Length = 200

 Score =  152 bits (383), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 84/191 (43%), Positives = 117/191 (61%), Gaps = 3/191 (1%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78
           RE   W +AG+DEVGRG LAGPVV AA+ILDP +   G+ DSK+++   RE L   I + 
Sbjct: 9   REVQGW-IAGVDEVGRGPLAGPVVAAAVILDPGHPIAGVKDSKQLTPLARERLAALIQAQ 67

Query: 79  AII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137
           A+  ++  A  + I++ NI  A+L A+  AV  L   P   L+DG+  P    C   AV+
Sbjct: 68  AVAWALGRAEVEEIEQLNIFWASLLAMERAVAALSEAPSLVLVDGKHCPPA-ACPVRAVV 126

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGD   ++IAAASI+AKV RD  M    K+YP YGF +H GYPT  H   +++ GP  IH
Sbjct: 127 KGDQKVMAIAAASIVAKVARDAEMVALEKRYPGYGFGTHKGYPTRAHLAALEKLGPCPIH 186

Query: 198 RLTFRPLRNLS 208
           R +FR ++ ++
Sbjct: 187 RRSFRAVKEIA 197


>gi|187478242|ref|YP_786266.1| ribonuclease HII [Bordetella avium 197N]
 gi|97182295|sp|Q2L146|RNH2_BORA1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|115422828|emb|CAJ49356.1| ribonuclease HII [Bordetella avium 197N]
          Length = 202

 Score =  152 bits (383), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 84/185 (45%), Positives = 112/185 (60%), Gaps = 2/185 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DE GRG LAG V  AA+ILDP     G+ DSK +  ++RE L E+I + A+   I+
Sbjct: 17  VAGVDEAGRGPLAGAVYAAAVILDPQRPIDGLADSKVLKAERRERLAEQIKAQALSWCIA 76

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID  NI +ATL A+  AVE L  +P  AL+DG   P  L C    +IKGD++  
Sbjct: 77  CASTDEIDSMNILRATLLAMQRAVEGLNQLPSLALVDGNQAPR-LRCAVQTIIKGDALVP 135

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AK  RD  ++  H  YP YGFD H GY TA H   ++E GP   HR +F P+
Sbjct: 136 AISAASILAKTARDAELQRLHALYPQYGFDQHKGYGTALHLARLREYGPCPEHRRSFAPI 195

Query: 205 RNLSV 209
           +   +
Sbjct: 196 KAFGI 200


>gi|229031467|ref|ZP_04187467.1| Ribonuclease [Bacillus cereus AH1271]
 gi|228729756|gb|EEL80736.1| Ribonuclease [Bacillus cereus AH1271]
          Length = 257

 Score =  152 bits (383), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 95/200 (47%), Positives = 132/200 (66%), Gaps = 6/200 (3%)

Query: 12  FEL---EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           FE+   E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KR
Sbjct: 57  FEMSRYEIALREKGLTLIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKR 116

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E  Y++I + AI I +   S Q ID+ NI++AT  A+  AV NL   P   LID   +P 
Sbjct: 117 ERFYDEIKAQAIVIGVGIVSPQIIDEINIYQATKQAMLDAVANLSCAPEYLLIDAMKLPT 176

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +P    ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + 
Sbjct: 177 PIP--QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEA 234

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           I+  G    HR +F P++++
Sbjct: 235 IEAHGVLEEHRKSFAPIKDM 254


>gi|329117652|ref|ZP_08246369.1| ribonuclease HII [Streptococcus parauberis NCFD 2020]
 gi|326908057|gb|EGE54971.1| ribonuclease HII [Streptococcus parauberis NCFD 2020]
          Length = 257

 Score =  152 bits (383), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/204 (44%), Positives = 128/204 (62%), Gaps = 12/204 (5%)

Query: 14  LEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           LE M+R EK+++      +AGIDEVGRG LAGPVV A +IL  N    G+NDSKKI   K
Sbjct: 55  LENMLRYEKSLYAQGYQAIAGIDEVGRGPLAGPVVAACVILPKNCKITGLNDSKKIPKSK 114

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR 123
            E +Y  +   AI + I   +++ ID+ NI++AT  A+  A+ NL+   + P   LID  
Sbjct: 115 HEMIYNLVIEKAIAVGIGLMTNEVIDEVNIYQATKLAMQAAINNLEGDNLTPDFLLIDAM 174

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +   +P ++  +IKGD+ SLSIAAASI+AKVTRDRLM    K YP Y F  + GY T  
Sbjct: 175 KLENSIPQES--IIKGDANSLSIAAASIVAKVTRDRLMVDYDKAYPGYDFAKNAGYGTKN 232

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H + +++ G + IHR TF P++++
Sbjct: 233 HLEGLRKLGVTEIHRRTFEPVKSM 256


>gi|157692285|ref|YP_001486747.1| ribonuclease HII [Bacillus pumilus SAFR-032]
 gi|189043566|sp|A8FD70|RNH2_BACP2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157681043|gb|ABV62187.1| ribonuclease HII [Bacillus pumilus SAFR-032]
          Length = 254

 Score =  152 bits (383), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 84/197 (42%), Positives = 120/197 (60%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            + E   + +    +AGIDE GRG LAGPVV AA+IL  + +  G+NDSK++S KKR   
Sbjct: 58  LQFENNAKAQGYTCIAGIDEAGRGPLAGPVVAAAVILKDDTVLLGLNDSKQLSEKKRLAY 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I   A+ I I       ID+ NI++A+  A+  AVE L   P   LID  ++P  LP
Sbjct: 118 YDLIQKEALDIGIGIVDAATIDEINIYEASRLAMVRAVEQLAHTPDYLLIDAMTLP--LP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +IKGD+ S SIAA + IAKVTRD++M    ++YP+Y F+ H GY T +H   I+ 
Sbjct: 176 IHQENIIKGDAKSASIAAGACIAKVTRDQMMEEYGRQYPEYQFEKHKGYGTKEHLAAIQT 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHRL+F P++++
Sbjct: 236 HGAAPIHRLSFAPVKSV 252


>gi|262375455|ref|ZP_06068688.1| ribonuclease HII [Acinetobacter lwoffii SH145]
 gi|262309709|gb|EEY90839.1| ribonuclease HII [Acinetobacter lwoffii SH145]
          Length = 195

 Score =  152 bits (383), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 83/183 (45%), Positives = 114/183 (62%), Gaps = 1/183 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           +AG+DE GRG L G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I   A+    +
Sbjct: 3   IAGVDEAGRGPLVGSVVAAAVILDPNNPIEGLNDSKKLTEKKREKLFIEIQEKALAWAIA 62

Query: 86  ASHQYI-DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            +     D+HNI +A+L A+  AVE L V P   L+DG  IP+ L     AV+ GD++  
Sbjct: 63  EASAAEIDEHNILQASLLAMRRAVEALPVQPEHVLVDGNKIPQGLAMSCDAVVGGDALHA 122

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M    +K+P +GF  H GYPT  H + I   G    HR +F P+
Sbjct: 123 EISAASILAKVTRDHQMIEMDQKHPQFGFAKHKGYPTKAHFEAIALHGVIDEHRRSFGPV 182

Query: 205 RNL 207
           + +
Sbjct: 183 KKV 185


>gi|190571269|ref|YP_001975627.1| ribonuclease HII [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|213018665|ref|ZP_03334473.1| ribonuclease HII [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
 gi|238056783|sp|B3CM59|RNH2_WOLPP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|190357541|emb|CAQ54978.1| ribonuclease HII [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|212995616|gb|EEB56256.1| ribonuclease HII [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
          Length = 197

 Score =  152 bits (383), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/199 (45%), Positives = 123/199 (61%), Gaps = 6/199 (3%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKR 68
           P F LE  +       +AG+DEVGRG LAGPV+ AA+I  D + +  GINDSKK++ K R
Sbjct: 4   PDFSLENTLSG----IIAGVDEVGRGPLAGPVISAAVIFTDRDTVIDGINDSKKLTPKCR 59

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           + LYEKITS A   I  AS + I+ +NI +AT  ++  A+ NL +     L+DG   PE 
Sbjct: 60  QVLYEKITSVAKFGIGMASVEEINSYNILQATKLSMKRALANLNLELDYVLVDGNQPPE- 118

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           +  Q  +++ GDS+S+SIAAASI+AKVTRDRLM   H K+P Y +  + GY T +H   I
Sbjct: 119 VKWQVKSIVNGDSLSISIAAASIVAKVTRDRLMEELHNKHPQYNWYKNKGYGTKEHLSAI 178

Query: 189 KEKGPSCIHRLTFRPLRNL 207
              G +  HR  F P+R L
Sbjct: 179 GLHGITKHHRKNFAPIRIL 197


>gi|238754793|ref|ZP_04616144.1| Ribonuclease HII [Yersinia ruckeri ATCC 29473]
 gi|238706953|gb|EEP99319.1| Ribonuclease HII [Yersinia ruckeri ATCC 29473]
          Length = 187

 Score =  152 bits (383), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 86/183 (46%), Positives = 112/183 (61%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++I   A+  S+ 
Sbjct: 2   IAGVDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEIIEKALSWSLG 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P  LP  + AV+KGDS   
Sbjct: 62  RAEPAEIDELNILHATMLAMQRAVAGLHIAPDYVLIDGNRCPA-LPMPSLAVVKGDSRVA 120

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M      +P YGF  H GYPTA H + +   G +  HR +F P+
Sbjct: 121 EISAASIVAKVTRDREMAELDSYFPGYGFAQHKGYPTALHLERLAALGATEHHRRSFSPV 180

Query: 205 RNL 207
           +N+
Sbjct: 181 KNV 183


>gi|291519510|emb|CBK74731.1| Ribonuclease HII [Butyrivibrio fibrisolvens 16/4]
          Length = 254

 Score =  152 bits (383), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 86/177 (48%), Positives = 118/177 (66%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG LAGPVV A +IL  +     INDSKK++  KREELYE+I   AI +SI 
Sbjct: 74  IGGIDEVGRGPLAGPVVTACVILPKDCDILYINDSKKLTAAKREELYEEIMEKAISVSIG 133

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           +AS + ID  NI +AT +A+  A+E  +V P+  L D  +IP+ +      +IKGD+ S+
Sbjct: 134 AASEERIDDINILQATYEAMRQAIEECKVEPQLLLNDAVTIPQ-VKIPQVPIIKGDAKSI 192

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SI AASIIAKVTRDR+M      +P+Y F ++ GY +A+H + +K+ GP  IHR +F
Sbjct: 193 SIGAASIIAKVTRDRMMVEYDSIFPEYHFANNKGYGSAEHIEALKKYGPCPIHRRSF 249


>gi|83721502|ref|YP_442565.1| ribonuclease HII [Burkholderia thailandensis E264]
 gi|167581492|ref|ZP_02374366.1| ribonuclease HII [Burkholderia thailandensis TXDOH]
 gi|167619603|ref|ZP_02388234.1| ribonuclease HII [Burkholderia thailandensis Bt4]
 gi|257138774|ref|ZP_05587036.1| ribonuclease HII [Burkholderia thailandensis E264]
 gi|97182353|sp|Q2SWY4|RNH2_BURTA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|83655327|gb|ABC39390.1| ribonuclease HII [Burkholderia thailandensis E264]
          Length = 214

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 122/182 (67%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           V G+DE GRG LAGPVV AA++LDP     G++DSK +S KKRE L+++I + A+   ++
Sbjct: 28  VCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAHALAYCVA 87

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS + ID  NI  AT+ A+  AVE L V P  A IDG   P  L  ++ A++ GD++  
Sbjct: 88  SASVEEIDTLNILHATMLAMKRAVEGLAVRPTLAKIDGNRCPM-LAIRSEAIVGGDALVP 146

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI+AASI+AKVTRDR++   H+++P YGFD+H GY T +H   ++E GP   HR +F P+
Sbjct: 147 SISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAPV 206

Query: 205 RN 206
           R 
Sbjct: 207 RE 208


>gi|217967913|ref|YP_002353419.1| Ribonuclease H [Dictyoglomus turgidum DSM 6724]
 gi|217337012|gb|ACK42805.1| Ribonuclease H [Dictyoglomus turgidum DSM 6724]
          Length = 203

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/194 (46%), Positives = 124/194 (63%), Gaps = 12/194 (6%)

Query: 19  REKNMWP----VAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHKKREELYE 73
           RE+ +W     +AG+DE GRGALAGPV   A+IL P ++IP  +NDSK +S K+REEL+E
Sbjct: 14  RERELWYYFRYIAGVDEAGRGALAGPVYAGAVILPPLSSIP--VNDSKLLSPKEREELFE 71

Query: 74  KITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPE-DLP 130
            I   A+  S   A+ + I++  I KATL A+  A+E L++ P   L+DG   IP  D+P
Sbjct: 72  IIKKEALCWSFGYATVEEIEELGILKATLLAMRRAIEKLEIKPEYLLVDGNIPIPNMDIP 131

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            +   ++KGD   LSIA+ASI+AKV RDR M+   K+YP YGF  H GY T +H++ IK 
Sbjct: 132 QET--IVKGDRKCLSIASASIVAKVLRDRYMKELDKEYPGYGFSRHKGYATKEHREKIKS 189

Query: 191 KGPSCIHRLTFRPL 204
            G   IHR  F+ L
Sbjct: 190 LGSLLIHRKGFKLL 203


>gi|323497990|ref|ZP_08102999.1| ribonuclease HII [Vibrio sinaloensis DSM 21326]
 gi|323317035|gb|EGA70037.1| ribonuclease HII [Vibrio sinaloensis DSM 21326]
          Length = 205

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 120/201 (59%), Gaps = 12/201 (5%)

Query: 17  MVREKNMWP----------VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           M +EK   P          +AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S K
Sbjct: 1   MTKEKQPLPPFEYPQGYQRIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEK 60

Query: 67  KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           KR  L  +I   A+  S+   S   ID+ NI +AT+ A+  A++ L V P  ALIDG   
Sbjct: 61  KRLALLPEIKEKALAWSVGRCSPTEIDQLNILQATMVAMQRAIDGLAVKPDLALIDGNRC 120

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           PE L   + AV+KGD     I+AASIIAKV RD+ M    K +P++GF  H GYPT  H 
Sbjct: 121 PE-LAMDSQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKLHPEFGFAKHKGYPTKAHF 179

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
           + I++ G    HR +F+P++ 
Sbjct: 180 EAIEKHGVIEQHRKSFKPVKK 200


>gi|251793243|ref|YP_003007971.1| ribonuclease HII [Aggregatibacter aphrophilus NJ8700]
 gi|247534638|gb|ACS97884.1| ribonuclease HII [Aggregatibacter aphrophilus NJ8700]
          Length = 195

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 84/182 (46%), Positives = 115/182 (63%), Gaps = 1/182 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L E I   A+  ++ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRALLAEDIKQKALAWALG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  A++ A+  A+++L++ P   L+DG  IP +L   A AV+KGD++  
Sbjct: 73  RAEPHEIDELNILHASMLAMERAIKHLKIQPHFVLVDGNRIPPNLGMPAQAVVKGDALVA 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M    KKYP Y F  H GYPT  H + + E G    +R +F P+
Sbjct: 133 EISAASILAKVARDQEMMELDKKYPQYAFAKHKGYPTKLHLEKLAEFGVLPEYRRSFAPI 192

Query: 205 RN 206
           +N
Sbjct: 193 KN 194


>gi|123443471|ref|YP_001007444.1| ribonuclease HII [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|166226668|sp|A1JP66|RNH2_YERE8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|122090432|emb|CAL13300.1| ribonuclease HII [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 198

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 115/183 (62%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++IT  A+  S+ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEITDKALSWSLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L + P   LIDG   P+ L   + AV+KGDS   
Sbjct: 73  RAEPEEIDQLNILHATMLAMQRAVAGLHIAPDYVLIDGNRCPK-LAMPSLAVVKGDSRVA 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M     ++P+YGF  H GYPTA H + +   G +  HR +F P+
Sbjct: 132 EISAASILAKVTRDREMTELDLQFPEYGFAQHKGYPTAVHLEKLTTFGATEHHRRSFGPV 191

Query: 205 RNL 207
           + +
Sbjct: 192 KRV 194


>gi|312869151|ref|ZP_07729325.1| ribonuclease HII [Lactobacillus oris PB013-T2-3]
 gi|311095397|gb|EFQ53667.1| ribonuclease HII [Lactobacillus oris PB013-T2-3]
          Length = 255

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 83/191 (43%), Positives = 117/191 (61%), Gaps = 8/191 (4%)

Query: 20  EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E+ +W      VAG+DEVGRG LAGPVV  A+ILDP+    G+ DSK+++  +RE+LY +
Sbjct: 63  ERQLWQSGCRYVAGMDEVGRGPLAGPVVTCAVILDPDFDLIGVTDSKQLTRHEREQLYLR 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   A+ +SI+    + ID+ NI+ AT DA+  AV NL   P   ++D   +P D P   
Sbjct: 123 IVDEAVEVSIAVNDRKTIDRLNIYAATQDAMMRAVRNLNHRPDHLIVDAVPLPFDYP--Q 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGD  S+S+AAASI+AK  RD LM+   + YP YGF  ++GY T +H   +   G 
Sbjct: 181 TTLIKGDQKSISVAAASIVAKEYRDHLMKDYDRVYPGYGFAENMGYGTKEHLAGLARLGA 240

Query: 194 SCIHRLTFRPL 204
             IHR +F P+
Sbjct: 241 CPIHRRSFNPV 251


>gi|229086390|ref|ZP_04218566.1| Ribonuclease [Bacillus cereus Rock3-44]
 gi|228696906|gb|EEL49715.1| Ribonuclease [Bacillus cereus Rock3-44]
          Length = 255

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 91/194 (46%), Positives = 129/194 (66%), Gaps = 3/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y++
Sbjct: 63  EKALREKGLAYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYDE 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I + AI I +   S Q ID+ NI++AT  A+  A+ NL   P   LID   +P  +P   
Sbjct: 123 INAKAIAIGVGIISPQVIDEINIYQATKRAMLDAIANLSCTPEHLLIDAMKLPSPIP--Q 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            +++KGD+ S+SI+AASIIAKVTRD +M+   K++P+YGF+ H+GY T +H Q I+  G 
Sbjct: 181 TSIVKGDTKSISISAASIIAKVTRDCMMKELGKEHPEYGFEQHMGYGTKQHLQAIETYGV 240

Query: 194 SCIHRLTFRPLRNL 207
              HR TF P++++
Sbjct: 241 LEEHRKTFAPIKDM 254


>gi|308173568|ref|YP_003920273.1| ribonuclease HII [Bacillus amyloliquefaciens DSM 7]
 gi|307606432|emb|CBI42803.1| ribonuclease HII [Bacillus amyloliquefaciens DSM 7]
 gi|328553499|gb|AEB23991.1| ribonuclease HII [Bacillus amyloliquefaciens TA208]
 gi|328911709|gb|AEB63305.1| ribonuclease HII [Bacillus amyloliquefaciens LL3]
          Length = 255

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 117/193 (60%), Gaps = 3/193 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E +  +K    +AG+DE GRG LAGPVV  A+IL       G+ DSKK+S KK EE Y +
Sbjct: 63  ERLSYKKGFRLIAGVDEAGRGPLAGPVVAGAVILPAQCEILGLTDSKKLSEKKLEEYYTR 122

Query: 75  ITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           IT  +A I +       ID+ NI++A   A+  AV  L   P   L D  ++P D+P  +
Sbjct: 123 ITEEAAAIGVGIVHADVIDRINIYEAARLAMVKAVNALAETPDYLLADAMTLPLDIPQSS 182

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             VIKGD+ S+SIAA + IAKVTRDRLM    K YP YGF+ + GY T +H + ++  GP
Sbjct: 183 --VIKGDAKSVSIAAGACIAKVTRDRLMAEYAKTYPMYGFEKNKGYGTKEHLEALQAYGP 240

Query: 194 SCIHRLTFRPLRN 206
           + IHR TF P+++
Sbjct: 241 TNIHRKTFAPVQS 253


>gi|260893261|ref|YP_003239358.1| Ribonuclease H [Ammonifex degensii KC4]
 gi|260865402|gb|ACX52508.1| Ribonuclease H [Ammonifex degensii KC4]
          Length = 204

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 87/184 (47%), Positives = 115/184 (62%), Gaps = 4/184 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSA-IISI 83
           VAG+DE GRG LAGPVV AA+I  P+ ++P  + DSK +S KKR EL  +I   A   +I
Sbjct: 16  VAGVDEAGRGPLAGPVVAAAVIFPPSLDLPL-LKDSKLLSPKKRWELACRIVELAEDWAI 74

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
              S   ID   I +AT  A+Y A+ +L++ P   LIDG S P  LP     ++KGDS  
Sbjct: 75  GIGSVAEIDLLGIREATFRAMYRALCSLRLPPDMVLIDGNSSPP-LPWPHLTIVKGDSRV 133

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            S+AAASI+AKVTRDRLM   H  +P Y F  H GYPT +H++++   GP  +HR TF P
Sbjct: 134 ASVAAASILAKVTRDRLMEDLHPLFPQYNFKRHKGYPTKEHKELLARYGPVSLHRRTFAP 193

Query: 204 LRNL 207
           +R+ 
Sbjct: 194 VRHF 197


>gi|153814000|ref|ZP_01966668.1| hypothetical protein RUMTOR_00207 [Ruminococcus torques ATCC 27756]
 gi|317502410|ref|ZP_07960575.1| ribonuclease [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088003|ref|ZP_08336926.1| hypothetical protein HMPREF1025_00509 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848396|gb|EDK25314.1| hypothetical protein RUMTOR_00207 [Ruminococcus torques ATCC 27756]
 gi|316896220|gb|EFV18326.1| ribonuclease [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330409314|gb|EGG88763.1| hypothetical protein HMPREF1025_00509 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 255

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 85/182 (46%), Positives = 116/182 (63%), Gaps = 2/182 (1%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           K+   + GIDE GRG LAGPVV  A+IL  +     +NDSKK+S  +RE LY++I   A+
Sbjct: 67  KDAEMICGIDEAGRGPLAGPVVAGAVILPKDCEILYLNDSKKLSASRREALYDEIMEKAV 126

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
            + +  AS   ID+ NI +AT +A+  AVE L V+P   L D  +IPE +P +   ++KG
Sbjct: 127 AVGVGMASPARIDEINILQATYEAMRKAVEQLSVVPDLLLNDAVTIPE-MPYRQVPIVKG 185

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D+ S+SIAAAS+IAKVTRDRLM    K  P+YGF  + GY +  H + +K  G S IHR 
Sbjct: 186 DAKSVSIAAASVIAKVTRDRLMMQYDKILPEYGFAQNKGYGSQSHIEALKRVGASPIHRR 245

Query: 200 TF 201
           +F
Sbjct: 246 SF 247


>gi|320546752|ref|ZP_08041063.1| ribonuclease HII [Streptococcus equinus ATCC 9812]
 gi|320448631|gb|EFW89363.1| ribonuclease HII [Streptococcus equinus ATCC 9812]
          Length = 259

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 91/206 (44%), Positives = 127/206 (61%), Gaps = 12/206 (5%)

Query: 12  FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
             LE M+R EK ++      + GIDEVGRG LAGPVV A +IL  N     +NDSKKI  
Sbjct: 52  LRLENMLRYEKELYKQGYQAIGGIDEVGRGPLAGPVVTACVILPKNCKIKHLNDSKKIPK 111

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALID 121
           K  EE+YE++ + A+ + I    +  ID  NI++AT   +  A+E L+     P   LID
Sbjct: 112 KHHEEIYEEVLARALGVGIGVIDNNVIDDINIYEATKVGMLQAIEQLKGEVTRPDYLLID 171

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
              +  D+P ++   IKGD+ SLSIAAASI+AKVTRDR+M    K+YP Y F+ +VGY T
Sbjct: 172 AMHLDTDIPQESL--IKGDANSLSIAAASIVAKVTRDRMMADYAKEYPGYAFEKNVGYGT 229

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207
             H + +K+ G + IHR TF P++++
Sbjct: 230 KDHLEGLKKLGITPIHRKTFEPIKSM 255


>gi|84623510|ref|YP_450882.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|97189477|sp|Q2P4B9|RNH2_XANOM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|84367450|dbj|BAE68608.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 246

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 83/182 (45%), Positives = 119/182 (65%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII-SI 83
           VAG+DE GRG LAGPV VAA++ DPN     G++DSK+++ ++RE+LY +I   A+  S+
Sbjct: 37  VAGVDEAGRGPLAGPVAVAAVVFDPNKPRINGLDDSKQLTAERREQLYARIVDRALAWSV 96

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
                + ID+ NI++AT+  +  AVE +  +   A IDG  +P+ LPC A A+I GD++ 
Sbjct: 97  VLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALD 156

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I AASI+AKVTRDRLM   H ++P+Y FD H GY T  H   ++  GP   HR +F P
Sbjct: 157 RAIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYSTPMHLAALQTHGPCPQHRRSFAP 216

Query: 204 LR 205
           +R
Sbjct: 217 VR 218


>gi|226325139|ref|ZP_03800657.1| hypothetical protein COPCOM_02931 [Coprococcus comes ATCC 27758]
 gi|225206487|gb|EEG88841.1| hypothetical protein COPCOM_02931 [Coprococcus comes ATCC 27758]
          Length = 253

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 88/177 (49%), Positives = 117/177 (66%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG LAGPVV  A+IL        INDSKK+S  KR+ELY++I   A+ + + 
Sbjct: 73  ICGIDEVGRGPLAGPVVAGAVILPKECEILYINDSKKLSAAKRDELYDEIMDKAVAVGLG 132

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID+ NI +AT +A+  A+ NL+V P   L D  +IPE +  Q   +IKGD+ S+
Sbjct: 133 MASPARIDEINILQATYEAMRQAIGNLKVEPDLLLNDAVTIPEVVIPQ-VPIIKGDAKSV 191

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SIAAASI+AKVTRDRLM    K  P YGF S+ GY +A+H + ++  GP+ IHR +F
Sbjct: 192 SIAAASIVAKVTRDRLMEEYDKVLPGYGFASNKGYGSAEHIKALQTLGPTPIHRRSF 248


>gi|88812391|ref|ZP_01127641.1| Ribonuclease H [Nitrococcus mobilis Nb-231]
 gi|88790398|gb|EAR21515.1| Ribonuclease H [Nitrococcus mobilis Nb-231]
          Length = 218

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 86/185 (46%), Positives = 116/185 (62%), Gaps = 4/185 (2%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
           W  AGIDE GRG LAGPV+ AA+IL P  I  GI DSK++S  +R EL   I + A+  +
Sbjct: 13  W-TAGIDEAGRGPLAGPVLAAAVILPPAPI-AGIADSKRLSAARRSELATIIRNRAVGWA 70

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I  A  + ID+ NI +A+L A+  AV  L   P  AL+DGR  P  LPC+  A++ GD+ 
Sbjct: 71  IGRAEVEEIDRLNILQASLLAMQRAVAVLTPKPSLALVDGRDKPR-LPCRVEAIVGGDAS 129

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            L+I AASI+AKV RD  M +  ++YP YG   H GY T +H   ++  GP+ IHR +F+
Sbjct: 130 VLAIGAASILAKVARDAEMIMLEQRYPGYGLARHKGYGTREHLAALRRLGPAPIHRRSFK 189

Query: 203 PLRNL 207
           P+R L
Sbjct: 190 PVRTL 194


>gi|172057903|ref|YP_001814363.1| ribonuclease H [Exiguobacterium sibiricum 255-15]
 gi|171990424|gb|ACB61346.1| Ribonuclease H [Exiguobacterium sibiricum 255-15]
          Length = 250

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 87/197 (44%), Positives = 121/197 (61%), Gaps = 6/197 (3%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           ER  FE     R +    +AG+DEVGRG LAGPVV AA+IL       G+ DSK++S K+
Sbjct: 56  ERSLFE--DRYRAQGHQRIAGVDEVGRGPLAGPVVAAAVILPAGFYHPGLTDSKQMSKKQ 113

Query: 68  REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           R   Y+ I   A ++I     + ID+ NI++A+  A+  AV   Q+ P + L+D  ++  
Sbjct: 114 RSAAYQHIQEVAEVAIGIIEPEEIDRINIYQASKQAMQQAV--AQLTPDALLVDAMTLDV 171

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           DLP ++   IKGD+ S+SIAAAS+IAK TRD +M      YP+YGFD H GY TA+H Q 
Sbjct: 172 DLPQESL--IKGDARSVSIAAASVIAKETRDTMMEQYAVLYPEYGFDQHAGYGTAQHLQA 229

Query: 188 IKEKGPSCIHRLTFRPL 204
           +   G + IHR TF+P+
Sbjct: 230 LDRVGVTPIHRKTFKPV 246


>gi|319744987|gb|EFV97315.1| ribonuclease HII [Streptococcus agalactiae ATCC 13813]
          Length = 254

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 91/210 (43%), Positives = 127/210 (60%), Gaps = 9/210 (4%)

Query: 4   NSIPERPHFELEAMVREKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN 58
           + + E    E + +V EK ++      +AGIDEVGRG LAGPVV AA+IL PN     +N
Sbjct: 47  SDLDEEARLE-QMLVYEKKLYIEHINLIAGIDEVGRGPLAGPVVAAAVILPPNCKIKHLN 105

Query: 59  DSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117
           DSKKI  KK +E+Y+ I   A+ + I     Q ID  NI++AT  A+  AV +L V P  
Sbjct: 106 DSKKIPKKKHQEIYQNILDQALAVGIGIQDSQCIDDINIYEATKHAMIDAVSHLSVAPEH 165

Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
            LID   +  DL      +IKGD+ SLSIAAASI+AKVTRD++M      YP Y F  + 
Sbjct: 166 LLIDAMVL--DLSIPQTKIIKGDANSLSIAAASIVAKVTRDKIMSDYDSTYPGYAFSKNA 223

Query: 178 GYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           GY T +H + +++ G + IHR +F P++++
Sbjct: 224 GYGTKEHLEGLQKYGITPIHRKSFEPIKSM 253


>gi|229174503|ref|ZP_04302035.1| Ribonuclease [Bacillus cereus MM3]
 gi|228609063|gb|EEK66353.1| Ribonuclease [Bacillus cereus MM3]
          Length = 257

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 96/199 (48%), Positives = 130/199 (65%), Gaps = 6/199 (3%)

Query: 12  FEL---EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           FE+   E  +REK +  +AGIDEVGRG LAGPVV AA++L  N    G+NDSKK+S  KR
Sbjct: 57  FEMSKYEIALREKGLTLIAGIDEVGRGPLAGPVVTAAVVLPENFYIPGLNDSKKLSEAKR 116

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E  Y++I + AI I +   S Q ID+ NI++AT  A+  AV NL   P   LID   +P 
Sbjct: 117 ERFYDEIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCAPEHLLIDAMKLPT 176

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +P    ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H   
Sbjct: 177 PIP--QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLGA 234

Query: 188 IKEKGPSCIHRLTFRPLRN 206
           I+  G    HR +F P+++
Sbjct: 235 IEAHGVLEEHRKSFAPIKD 253


>gi|218898990|ref|YP_002447401.1| ribonuclease HII [Bacillus cereus G9842]
 gi|228902340|ref|ZP_04066497.1| Ribonuclease [Bacillus thuringiensis IBL 4222]
 gi|228909662|ref|ZP_04073485.1| Ribonuclease [Bacillus thuringiensis IBL 200]
 gi|228966782|ref|ZP_04127826.1| Ribonuclease [Bacillus thuringiensis serovar sotto str. T04001]
 gi|226736813|sp|B7IUJ6|RNH2_BACC2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|218543986|gb|ACK96380.1| ribonuclease HII [Bacillus cereus G9842]
 gi|228792881|gb|EEM40439.1| Ribonuclease [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228849951|gb|EEM94782.1| Ribonuclease [Bacillus thuringiensis IBL 200]
 gi|228857309|gb|EEN01812.1| Ribonuclease [Bacillus thuringiensis IBL 4222]
          Length = 257

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 95/200 (47%), Positives = 132/200 (66%), Gaps = 6/200 (3%)

Query: 12  FEL---EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           FE+   E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KR
Sbjct: 57  FEMSKYENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKR 116

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E  Y++I   AI I +   S Q ID  NI++AT  A+  AV NL   P+  LID   +P 
Sbjct: 117 ERFYDEIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT 176

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +P    ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP+YGF+ H+GY T +H + 
Sbjct: 177 PIP--QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEA 234

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           I+  G    HR +F P++++
Sbjct: 235 IEVHGVLDEHRKSFAPIKDM 254


>gi|331005976|ref|ZP_08329321.1| Ribonuclease HII [gamma proteobacterium IMCC1989]
 gi|330420221|gb|EGG94542.1| Ribonuclease HII [gamma proteobacterium IMCC1989]
          Length = 202

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 117/182 (64%), Gaps = 2/182 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DEVGRG LAG VV AA+IL PN    G+NDSKK+S KKR+ L++ I   A+  SI+ 
Sbjct: 14  AGVDEVGRGPLAGDVVTAAVILGPNKPIEGLNDSKKLSEKKRDALFDIIKERALSWSIAR 73

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + ID+ NI +A+L A+  AV+ L + P    +DG  +P      A  VIKGDS   +
Sbjct: 74  CSVEDIDQINILQASLLAMKKAVDGLAITPEHVWVDGNKMPR-WNYTAETVIKGDSRVPA 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           IAAASI+AKVTRDR M    ++YP YGF +H GYPT  H   ++  G + IHR ++ P++
Sbjct: 133 IAAASILAKVTRDREMVAYEEQYPGYGFAAHKGYPTKVHIDALQRLGITPIHRRSYAPVK 192

Query: 206 NL 207
            +
Sbjct: 193 KI 194


>gi|113868020|ref|YP_726509.1| ribonuclease HII [Ralstonia eutropha H16]
 gi|123133958|sp|Q0KA30|RNH2_RALEH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|113526796|emb|CAJ93141.1| Ribonuclease HII [Ralstonia eutropha H16]
          Length = 238

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 82/185 (44%), Positives = 118/185 (63%), Gaps = 5/185 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + G+DE GRG LAGPV  AA+ILDP     G+ DSK ++  KRE+LYEKI   A+   I+
Sbjct: 25  LCGVDEAGRGPLAGPVYAAAVILDPKRPIRGLADSKILTAAKREQLYEKICERALGWHIA 84

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
            A+ + ID  NI  A++ A+  AV+ L    ++P    +DG   P  +P    A+++GD+
Sbjct: 85  FATVEEIDTLNILHASMLAMQRAVQGLAASGIVPDLVQVDGNRCPR-VPFPVEAIVQGDA 143

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +  +I+AASI+AKV RDR +R+ H++YP YGFDSHVGY T +H   + E G +  HR +F
Sbjct: 144 LVKAISAASILAKVARDRELRVLHERYPQYGFDSHVGYGTPQHLAALAEFGATPHHRRSF 203

Query: 202 RPLRN 206
            P+R 
Sbjct: 204 APVRE 208


>gi|260662114|ref|ZP_05863010.1| ribonuclease HII [Lactobacillus fermentum 28-3-CHN]
 gi|260553497|gb|EEX26389.1| ribonuclease HII [Lactobacillus fermentum 28-3-CHN]
          Length = 256

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 83/191 (43%), Positives = 119/191 (62%), Gaps = 8/191 (4%)

Query: 20  EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +W      VAGIDEVGRG LAGPVV  A++LD      G+ DSK++S  +RE+LY +
Sbjct: 63  ENQLWQAGHQYVAGIDEVGRGPLAGPVVTCAVVLDSQFDLVGVTDSKQLSRHEREQLYLR 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   A+ +S++ +  Q ID+ NI+ AT  A+  +V+ L   P   ++D  ++P D+P   
Sbjct: 123 ILDEAVEVSLAVSPAQEIDRLNIYAATQTAMIRSVKALHHQPSHLIVD--AVPLDIPVPQ 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +I+GD  S+S+AAASI+AK  RD LM I  + YP YGF  ++GY TA H   +++ G 
Sbjct: 181 TTLIRGDQKSISVAAASIVAKEYRDHLMAIYDRLYPGYGFKDNMGYGTAAHLAGLEQLGA 240

Query: 194 SCIHRLTFRPL 204
             IHR TFRP+
Sbjct: 241 CPIHRRTFRPV 251


>gi|154483562|ref|ZP_02026010.1| hypothetical protein EUBVEN_01266 [Eubacterium ventriosum ATCC
           27560]
 gi|149735472|gb|EDM51358.1| hypothetical protein EUBVEN_01266 [Eubacterium ventriosum ATCC
           27560]
          Length = 251

 Score =  151 bits (381), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 88/177 (49%), Positives = 117/177 (66%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           + GIDEVGRG LAGPVV  A+IL  N     INDSKK+S KKREELYE I   A+ + ++
Sbjct: 71  ICGIDEVGRGPLAGPVVAGAVILPKNCDILYINDSKKLSAKKREELYEVIMEKAVCAKTA 130

Query: 86  A-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S + ID+ NI +AT +A+  A+  L+  P   L D  +IP  +P +  ++IKGD+ S+
Sbjct: 131 VVSPKVIDEINILQATYEAMRQAISMLEPQPTLLLNDAVNIP-GVPMKQVSIIKGDAKSI 189

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SI AASIIAKVTRD +M    K YP+Y F S+ GY +AKH + +K+ GP  IHR +F
Sbjct: 190 SIGAASIIAKVTRDAMMVEYDKIYPEYDFASNKGYGSAKHIEALKKYGPCPIHRKSF 246


>gi|22537172|ref|NP_688023.1| ribonuclease HII [Streptococcus agalactiae 2603V/R]
 gi|25011101|ref|NP_735496.1| ribonuclease HII [Streptococcus agalactiae NEM316]
 gi|76798272|ref|ZP_00780520.1| ribonuclease HII [Streptococcus agalactiae 18RS21]
 gi|77410447|ref|ZP_00786808.1| ribonuclease HII [Streptococcus agalactiae CJB111]
 gi|77413753|ref|ZP_00789934.1| ribonuclease HII [Streptococcus agalactiae 515]
 gi|39932400|sp|Q8DZT5|RNH2_STRA5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|39932402|sp|Q8E5I2|RNH2_STRA3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|22534036|gb|AAM99895.1|AE014238_8 ribonuclease HII [Streptococcus agalactiae 2603V/R]
 gi|23095500|emb|CAD46706.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76586383|gb|EAO62893.1| ribonuclease HII [Streptococcus agalactiae 18RS21]
 gi|77160182|gb|EAO71312.1| ribonuclease HII [Streptococcus agalactiae 515]
 gi|77163395|gb|EAO74345.1| ribonuclease HII [Streptococcus agalactiae CJB111]
          Length = 253

 Score =  151 bits (381), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 91/210 (43%), Positives = 127/210 (60%), Gaps = 9/210 (4%)

Query: 4   NSIPERPHFELEAMVREKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN 58
           + + E    E + +V EK ++      +AGIDEVGRG LAGPVV AA+IL PN     +N
Sbjct: 46  SDLDEEARLE-QMLVYEKKLYIEHINLIAGIDEVGRGPLAGPVVAAAVILPPNCKIKHLN 104

Query: 59  DSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117
           DSKKI  KK +E+Y+ I   A+ + I     Q ID  NI++AT  A+  AV +L V P  
Sbjct: 105 DSKKIPKKKHQEIYQNILDQALAVGIGIQDSQCIDDINIYEATKHAMIDAVSHLSVAPEH 164

Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
            LID   +  DL      +IKGD+ SLSIAAASI+AKVTRD++M      YP Y F  + 
Sbjct: 165 LLIDAMVL--DLSIPQTKIIKGDANSLSIAAASIVAKVTRDKIMSDYDSTYPGYAFSKNA 222

Query: 178 GYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           GY T +H + +++ G + IHR +F P++++
Sbjct: 223 GYGTKEHLEGLQKYGITPIHRKSFEPIKSM 252


>gi|124262697|ref|YP_001023167.1| RNase HII [Methylibium petroleiphilum PM1]
 gi|189043523|sp|A2SMZ3|RNH21_METPP RecName: Full=Ribonuclease HII 1; Short=RNase HII 1
 gi|124261943|gb|ABM96932.1| RNase HII [Methylibium petroleiphilum PM1]
          Length = 198

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 85/180 (47%), Positives = 115/180 (63%), Gaps = 2/180 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS-SAIISIS 84
            AG+DE GRG LAGPVV AA+ILDP+    G+NDSK++S K+R+ L++ I   +A   I+
Sbjct: 9   TAGVDEAGRGPLAGPVVAAAVILDPSRPIDGLNDSKQLSAKRRDRLFDLIIERAAAYCIA 68

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID+ NI +AT+ A+  A+  L V P+  LIDG   P  LP ++ A++KGD+   
Sbjct: 69  EASVEEIDRLNILQATMLAMQRAIAGLSVTPQLVLIDGNRSPL-LPMRSEAIVKGDARVT 127

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI AASI+AKV RDRL    H+ +P YGF  H GY TA H   + + G    HR TF P+
Sbjct: 128 SIGAASILAKVHRDRLCAKLHETFPLYGFAVHKGYGTADHLAALVQHGACPEHRRTFSPV 187


>gi|229162773|ref|ZP_04290730.1| Ribonuclease HII [Bacillus cereus R309803]
 gi|228620655|gb|EEK77524.1| Ribonuclease HII [Bacillus cereus R309803]
          Length = 257

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 96/205 (46%), Positives = 132/205 (64%), Gaps = 7/205 (3%)

Query: 8   ERPHF----ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           ER  F    + E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+
Sbjct: 52  EREKFLEMSKYENALREKGLAYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKL 111

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           S  KRE  Y++I + AI I +   S Q ID+ NI++AT  A+  AV NL   P+  LID 
Sbjct: 112 SEAKRERFYDEIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDA 171

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
             +P  +P    ++IKGD+ S+SI+AASIIAKVTRDR+M+    KYP YGF+ H+GY T 
Sbjct: 172 MKLPTPIP--QTSIIKGDAKSISISAASIIAKVTRDRMMKELGGKYPAYGFEQHMGYGTK 229

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207
           +H + I   G    HR +F P++++
Sbjct: 230 QHLEAIAAHGVLEEHRKSFAPIKDM 254


>gi|222151079|ref|YP_002560233.1| ribonuclease HII [Macrococcus caseolyticus JCSC5402]
 gi|254807980|sp|B9EBC6|RNH2_MACCJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|222120202|dbj|BAH17537.1| ribonuclease HII [Macrococcus caseolyticus JCSC5402]
          Length = 264

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 85/198 (42%), Positives = 126/198 (63%), Gaps = 5/198 (2%)

Query: 13  ELEAMV---REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           E E M+   R  N   V GIDEVGRG LAGPV+  A+IL+  +   G+NDSK++S  KR 
Sbjct: 55  EYEQMLEYERRYNGKVVCGIDEVGRGPLAGPVIACAVILNDGHHYIGLNDSKQLSKHKRA 114

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            LY+ +T S   +I +AS + IDK NI++AT  A++ A++ L V P   LID  ++   L
Sbjct: 115 SLYDALTQSVTYAIGAASVEEIDKFNIYEATKLAMHRAIDKLPVKPDVLLIDAMNLNTGL 174

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             +  ++IKGD+ S+SIAAAS+IAKV RD LM   H+++P Y F+ + GY T +H   + 
Sbjct: 175 IEE--SIIKGDAKSVSIAAASVIAKVYRDHLMEEIHEEFPYYDFNRNAGYGTKRHLDGLM 232

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + G +  HR +F P++++
Sbjct: 233 QYGITAHHRKSFEPIKSM 250


>gi|147678043|ref|YP_001212258.1| ribonuclease HII [Pelotomaculum thermopropionicum SI]
 gi|189043637|sp|A5D1I3|RNH2_PELTS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|146274140|dbj|BAF59889.1| ribonuclease HII [Pelotomaculum thermopropionicum SI]
          Length = 266

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 86/186 (46%), Positives = 116/186 (62%), Gaps = 6/186 (3%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKREELYEKITSSAII- 81
           PVAG+DE GRG LAGPVV AA+IL P  +    G+NDSKK++  KR EL  +I   A+  
Sbjct: 74  PVAGVDEAGRGPLAGPVVAAAVILPPVADLALAGLNDSKKLNPSKRAELAARIKKVALAW 133

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGD 140
           S   ++ + I   NIH A+L A+  AV  L++ P   L+DG  I   +LP    A+  GD
Sbjct: 134 SAGISTVEEIFNENIHAASLTAMRRAVLKLKIRPAYLLVDGYRISRLELP--QLALTGGD 191

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
            +S S+AAASI+AKV RDRLM   H +YP YGF+ H GY T +H   ++  GP  +HR  
Sbjct: 192 GLSASVAAASILAKVLRDRLMDFYHVQYPQYGFNRHKGYATPEHLAALERYGPCPLHRAG 251

Query: 201 FRPLRN 206
           +RP++N
Sbjct: 252 YRPVKN 257


>gi|189485020|ref|YP_001955961.1| ribonuclease HII [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|254808005|sp|B1GZ18|RNH2_UNCTG RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|170286979|dbj|BAG13500.1| ribonuclease HII [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 210

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 87/198 (43%), Positives = 123/198 (62%), Gaps = 3/198 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREE 70
           F  +     K  +PVAGIDE GRG LAGPVV A +IL  ++ IP+ +NDSK++S KKRE 
Sbjct: 6   FSFDRNFYNKGFYPVAGIDEAGRGPLAGPVVAAVVILPKDSAIPY-LNDSKQLSEKKREI 64

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L+E I  +A+  ++   +++ ID+ NI +AT  A+  AV  L+  P   LIDG      L
Sbjct: 65  LFEIIKETALDYAVELVNNEIIDEINILQATFLAMSRAVLKLKTQPDLYLIDGNRKVHGL 124

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                 ++ GD+ S  IAAASI+AKV+RD++M    K+YP Y F+ H GY T KH + +K
Sbjct: 125 SFNQETIVGGDAKSACIAAASILAKVSRDKMMLEYAKQYPVYEFEKHKGYGTKKHIEALK 184

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + G   IHRLTF P+ ++
Sbjct: 185 KHGICPIHRLTFSPVNDI 202


>gi|302771367|ref|XP_002969102.1| ribonuclease H11 [Selaginella moellendorffii]
 gi|300163607|gb|EFJ30218.1| ribonuclease H11 [Selaginella moellendorffii]
          Length = 195

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 94/190 (49%), Positives = 121/190 (63%), Gaps = 9/190 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII--S 82
           V G+DE GRG LAGPVV AA I+ P ++   GI+DSKK++ +KRE+LY +ITS+  +  S
Sbjct: 3   VIGVDEAGRGPLAGPVVAAACII-PEDVDIQGIDDSKKLTAEKREQLYSQITSTPGVRFS 61

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS----ALIDGRSIPEDLPCQ-AFAVI 137
           I       ID+ NI +AT++A+   VE L    R      LIDG  IP  L  + A +V+
Sbjct: 62  ICVVDAPRIDEINILQATMEAMETCVEELTGNGRDHPPYILIDGNRIPGGLSGKHARSVV 121

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGD+ S  IAAASI+AKVTRDRLM    K++P YGF  H GY TA H   + + GP  IH
Sbjct: 122 KGDAESHVIAAASILAKVTRDRLMEDYDKRWPLYGFKDHKGYGTASHTAALLKHGPCDIH 181

Query: 198 RLTFRPLRNL 207
           R +F PLRNL
Sbjct: 182 RRSFAPLRNL 191


>gi|301300759|ref|ZP_07206943.1| ribonuclease HII [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851609|gb|EFK79309.1| ribonuclease HII [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 255

 Score =  151 bits (381), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 86/194 (44%), Positives = 132/194 (68%), Gaps = 8/194 (4%)

Query: 20  EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E+++W      +AG+DEVGRG LAGPVV AA+IL  +   F +NDSK++S KKREELY+K
Sbjct: 61  ERDLWNKGIEYIAGVDEVGRGPLAGPVVTAAVILPHDFDIFEVNDSKQLSEKKREELYKK 120

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   A+ +S+  + +  ID+ NI++AT  A+  A+E+L + P+  ++D  +I   +P   
Sbjct: 121 ILEKAVAVSVGLSDNNLIDEVNIYEATRLAMKQAIESLNITPQKIIVDAMTIDTKIP--Q 178

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGD+ S S+AAASI+AKVTRD LM+   + YP+YGF+ + GY T +H + ++ KG 
Sbjct: 179 LRLIKGDAKSASVAAASIVAKVTRDHLMQFYARIYPEYGFEKNDGYGTKQHLEGLENKGV 238

Query: 194 SCIHRLTFRPLRNL 207
           + IHR +F P++ +
Sbjct: 239 TPIHRQSFEPVKKI 252


>gi|161504651|ref|YP_001571763.1| ribonuclease HII [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|189043654|sp|A9MPH8|RNH2_SALAR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|160865998|gb|ABX22621.1| hypothetical protein SARI_02772 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 198

 Score =  151 bits (381), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 111/182 (60%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  LY++I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALYDEIKEKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P  LP  + AV+KGDS   
Sbjct: 72  RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPA-LPVPSMAVVKGDSRVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + + G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMAALDIIFPQYGFAQHKGYPTAFHLEKLAQYGATAHHRRSFAPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|33152162|ref|NP_873515.1| ribonuclease HII [Haemophilus ducreyi 35000HP]
 gi|39932311|sp|Q7VMF2|RNH2_HAEDU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|33148384|gb|AAP95904.1| ribonuclease HII [Haemophilus ducreyi 35000HP]
          Length = 197

 Score =  151 bits (381), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 116/184 (63%), Gaps = 4/184 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S KKR  L  +I   A+  S+ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPQQPILGLADSKKLSEKKRILLATEIKQKALCWSLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            A  + ID+ NI  AT+ A+  A+  L + P   L+DG  IP  ++P QA  ++KGDS+ 
Sbjct: 73  RAEAEEIDQLNILHATMLAMQRAINALTIQPDFVLVDGNRIPSLNMPAQA--IVKGDSLV 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKV RD  M+I  +++P+YGF  H GYPT  H + + + G +  HR +F P
Sbjct: 131 AEISAASILAKVARDHEMQILDQQFPEYGFAQHKGYPTKLHIEKLAQFGATPFHRKSFAP 190

Query: 204 LRNL 207
           +R +
Sbjct: 191 VRKI 194


>gi|315648159|ref|ZP_07901260.1| ribonuclease HII [Paenibacillus vortex V453]
 gi|315276805|gb|EFU40148.1| ribonuclease HII [Paenibacillus vortex V453]
          Length = 205

 Score =  151 bits (381), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 89/199 (44%), Positives = 125/199 (62%), Gaps = 10/199 (5%)

Query: 17  MVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           ++ E++ W     +AGIDEVGRG L G VV AA+IL    +  GI+DSKK+S KKRE LY
Sbjct: 5   LMYERDYWNHYIHIAGIDEVGRGCLFGDVVAAAVILPEGLVIEGIDDSKKLSAKKRETLY 64

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           + I   A+ + +     + ID+ NI +A   A+  AVE L V P+  L+D   +  D+P 
Sbjct: 65  DLIMEDALAVGVGLVDAETIDRINIKQAARLAMKMAVEQLAVTPQFLLVDAEKVDCDIPQ 124

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLM-RIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
           +  A+IKGD+ S SIAAASIIAKVTRDRL  R    +YP+YG   H GY T  H++ ++ 
Sbjct: 125 R--AIIKGDANSQSIAAASIIAKVTRDRLCEREWEARYPEYGIAVHKGYATKFHREQLQL 182

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            GP+ +HR +F  L+N+ +
Sbjct: 183 HGPTSMHRRSF--LKNMEI 199


>gi|313889379|ref|ZP_07823027.1| ribonuclease HII [Streptococcus pseudoporcinus SPIN 20026]
 gi|313122211|gb|EFR45302.1| ribonuclease HII [Streptococcus pseudoporcinus SPIN 20026]
          Length = 257

 Score =  151 bits (381), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 90/200 (45%), Positives = 122/200 (61%), Gaps = 6/200 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F  E  + ++    +AGIDEVGRG LAGPVV A ++L  N    G+NDSKKI   K   L
Sbjct: 59  FRYERDIYQQGYHCIAGIDEVGRGPLAGPVVAACVVLPKNCKIKGLNDSKKIPKSKHITL 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPE 127
           +E+I   A+ I I    ++ ID  NI++AT  A+  A+ NL   +VIP   LID  ++  
Sbjct: 119 FEQIKKQAMGIGIGIVDNEMIDTINIYQATKLAMLEAINNLKKVEVIPDYLLIDAMTL-- 176

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           D+      +IKGD+ SLSIAAASIIAKVTRD+LM    + YP Y F  + GY T KH Q 
Sbjct: 177 DISIPQMPLIKGDANSLSIAAASIIAKVTRDQLMMSYDQTYPGYDFAQNAGYGTKKHLQG 236

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           +K  G + IHR +F P++++
Sbjct: 237 LKNYGVTPIHRKSFEPIKSM 256


>gi|317131439|ref|YP_004090753.1| Ribonuclease H [Ethanoligenens harbinense YUAN-3]
 gi|315469418|gb|ADU26022.1| Ribonuclease H [Ethanoligenens harbinense YUAN-3]
          Length = 207

 Score =  151 bits (381), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 117/188 (62%), Gaps = 4/188 (2%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +    V G+DE GRG LAGPV  AA+IL    +  G+NDSKK+S K+RE L+++I   A+
Sbjct: 13  QGFGTVCGVDEAGRGPLAGPVFAAAVILPRGVMIEGVNDSKKLSEKRREILFDRIRDQAL 72

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             +++SA  + I ++NI  A+L A+  AV +LQ+  ++AL+DG   P  L   +  V++G
Sbjct: 73  ACAVASADEREIAEYNILGASLLAMRRAVSSLQIPAQAALVDGNRDPL-LTIPSTCVVRG 131

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D+    IAAASI+AKV+RDR M     KYP YGF  H GYPT  H + I   GP   HRL
Sbjct: 132 DARCACIAAASILAKVSRDRYMLELDAKYPQYGFAKHKGYPTRAHYEAILRYGPCPAHRL 191

Query: 200 TFRPLRNL 207
            F  LRNL
Sbjct: 192 YF--LRNL 197


>gi|318606916|emb|CBY28414.1| ribonuclease HII [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 198

 Score =  151 bits (381), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 114/183 (62%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++IT  A+  S+ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPKQPIVGLADSKKLSEKRRLSLYDEITDKALSWSLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L + P   LIDG   P+ L   + AV+KGDS   
Sbjct: 73  RAEPEEIDQLNILHATMLAMQRAVAGLHIAPDYVLIDGNRCPK-LAMPSLAVVKGDSRVA 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M     ++P+YGF  H GYPTA H   +   G +  HR +F P+
Sbjct: 132 EISAASILAKVTRDREMTELDLQFPEYGFAQHKGYPTAVHLDKLTTFGATEHHRRSFGPV 191

Query: 205 RNL 207
           + +
Sbjct: 192 KRV 194


>gi|228916474|ref|ZP_04080040.1| Ribonuclease [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228947556|ref|ZP_04109846.1| Ribonuclease [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229123351|ref|ZP_04252555.1| Ribonuclease [Bacillus cereus 95/8201]
 gi|228660127|gb|EEL15763.1| Ribonuclease [Bacillus cereus 95/8201]
 gi|228812076|gb|EEM58407.1| Ribonuclease [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228843053|gb|EEM88135.1| Ribonuclease [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 257

 Score =  151 bits (381), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 93/194 (47%), Positives = 128/194 (65%), Gaps = 3/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +REK +  +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S  KRE  Y +
Sbjct: 63  ENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYGE 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I + AI I +   S Q ID+ NI++AT  A+  A+ NL   P   LID   +P  +P   
Sbjct: 123 IKAKAIAIGVGIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPTPIP--Q 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G 
Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHGV 240

Query: 194 SCIHRLTFRPLRNL 207
              HR +F P++++
Sbjct: 241 LEEHRKSFAPIKDM 254


>gi|254293355|ref|YP_003059378.1| ribonuclease H [Hirschia baltica ATCC 49814]
 gi|254041886|gb|ACT58681.1| Ribonuclease H [Hirschia baltica ATCC 49814]
          Length = 194

 Score =  151 bits (381), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 84/181 (46%), Positives = 108/181 (59%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           + G+DE GRG  AGPV   A+IL+P N   G+NDSKK+S KKR++L   I   A+  SI 
Sbjct: 7   ICGVDEAGRGPWAGPVCAGAVILNPLNPIAGLNDSKKLSEKKRDKLALLIKEYALCWSIG 66

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID+ NI +A   A+  AV+ L + P  ALIDG   P  L C+   +I GD I  
Sbjct: 67  WASPEEIDELNIRQANHLAMQRAVQGLSIAPDLALIDGNDAPP-LDCRTETLIGGDGIEA 125

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AK  RD  M     +YPDYGF  H GY    H   +K  GP  IHR+TF+P+
Sbjct: 126 CISAASILAKTARDAKMVEYDLQYPDYGFAKHKGYGVKAHSDALKRIGPCPIHRMTFKPV 185

Query: 205 R 205
           R
Sbjct: 186 R 186


>gi|58581586|ref|YP_200602.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|75435665|sp|Q5H1F4|RNH2_XANOR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|58426180|gb|AAW75217.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 252

 Score =  151 bits (381), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 83/182 (45%), Positives = 119/182 (65%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83
           VAG+DE GRG LAGPV VAA++ DPN     G++DSK+++ ++RE+LY +I   A+  S+
Sbjct: 43  VAGVDEAGRGPLAGPVAVAAVVFDPNKPRINGLDDSKQLTAERREQLYARIVDRALSWSV 102

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
                + ID+ NI++AT+  +  AVE +  +   A IDG  +P+ LPC A A+I GD++ 
Sbjct: 103 VLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALD 162

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I AASI+AKVTRDRLM   H ++P+Y FD H GY T  H   ++  GP   HR +F P
Sbjct: 163 RAIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYSTPMHLAALQTHGPCPQHRRSFAP 222

Query: 204 LR 205
           +R
Sbjct: 223 VR 224


>gi|167855723|ref|ZP_02478479.1| ribonuclease HII [Haemophilus parasuis 29755]
 gi|167853179|gb|EDS24437.1| ribonuclease HII [Haemophilus parasuis 29755]
          Length = 195

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 85/180 (47%), Positives = 113/180 (62%), Gaps = 2/180 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV  A+ILDPN    G+ DSKK+S K+R  L E+I + A+  S+ 
Sbjct: 10  IAGVDEVGRGPLVGAVVTVAVILDPNQPIEGLADSKKLSEKRRLALAEEIKAKALCWSLG 69

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L++ P   L+DG  IP  LP  A AV+KGDS   
Sbjct: 70  RAEPDEIDQLNILHATMLAMQRAVAGLRIQPDFVLVDGNRIP-TLPMPAQAVVKGDSFVA 128

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M    K+YP+YGF  H GYPT  H + ++  G +  HR +F P+
Sbjct: 129 EISAASILAKVARDQEMDELDKQYPEYGFAQHKGYPTKLHFEKLESLGVTPYHRKSFAPV 188


>gi|119477116|ref|ZP_01617352.1| ribonuclease HII [marine gamma proteobacterium HTCC2143]
 gi|119449479|gb|EAW30717.1| ribonuclease HII [marine gamma proteobacterium HTCC2143]
          Length = 201

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 88/193 (45%), Positives = 119/193 (61%), Gaps = 2/193 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
           +EA V   +   +AG+DEVGRG LAG VV AA+ILDP N   G++DSKK++ KKRE L+ 
Sbjct: 1   MEAFVSNYSGILLAGVDEVGRGPLAGDVVAAAVILDPANPIRGLDDSKKLTEKKREALFP 60

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   A+   ++ AS + ID+ NI +A+L A+  AVE L + P   L+DG  +P      
Sbjct: 61  EIQEKALSWFVARASVREIDELNILQASLLAMKRAVEGLVLQPEHVLVDGNKLPR-WAYS 119

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
           A AV++GDS    I AASI+AKV RDR M     +YP YGF  H GYPT  H   +   G
Sbjct: 120 AEAVVRGDSRVQVIGAASILAKVVRDREMVAFDDEYPGYGFAGHKGYPTRVHMTALDVLG 179

Query: 193 PSCIHRLTFRPLR 205
            + IHR +F P++
Sbjct: 180 VTPIHRSSFGPVK 192


>gi|156935301|ref|YP_001439217.1| ribonuclease HII [Cronobacter sakazakii ATCC BAA-894]
 gi|166225185|sp|A7MI15|RNH2_ENTS8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|156533555|gb|ABU78381.1| hypothetical protein ESA_03158 [Cronobacter sakazakii ATCC BAA-894]
          Length = 198

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 110/182 (60%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  L+++I   AI  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPLKPIVGLADSKKLSEKRRLALFDEIKEKAIAWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L V P   L+DG   P  LP  + AV+KGDS   
Sbjct: 72  RAEPHEIDELNILHATMLAMQRAVAGLAVTPEYVLVDGNRCPA-LPMPSMAVVKGDSRVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMAELDLTFPQYGFAQHKGYPTAFHLERLAEHGATAHHRRSFAPV 190

Query: 205 RN 206
           R 
Sbjct: 191 RR 192


>gi|49478406|ref|YP_037898.1| ribonuclease HII [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|118479059|ref|YP_896210.1| ribonuclease HII [Bacillus thuringiensis str. Al Hakam]
 gi|225865818|ref|YP_002751196.1| ribonuclease HII [Bacillus cereus 03BB102]
 gi|229186077|ref|ZP_04313246.1| Ribonuclease [Bacillus cereus BGSC 6E1]
 gi|301055327|ref|YP_003793538.1| ribonuclease HII [Bacillus anthracis CI]
 gi|73917596|sp|Q6HEX8|RNH2_BACHK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166225168|sp|A0RHL0|RNH2_BACAH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807966|sp|C1EP61|RNH2_BACC3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|49329962|gb|AAT60608.1| ribonuclease HII (RNase HII) [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118418284|gb|ABK86703.1| RNase HII [Bacillus thuringiensis str. Al Hakam]
 gi|225786445|gb|ACO26662.1| ribonuclease HII [Bacillus cereus 03BB102]
 gi|228597253|gb|EEK54904.1| Ribonuclease [Bacillus cereus BGSC 6E1]
 gi|300377496|gb|ADK06400.1| ribonuclease HII [Bacillus cereus biovar anthracis str. CI]
          Length = 257

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 93/194 (47%), Positives = 128/194 (65%), Gaps = 3/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +REK +  +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S  KRE  Y +
Sbjct: 63  ENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYGE 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I + AI I +   S Q ID+ NI++AT  A+  A+ NL   P   LID   +P  +P   
Sbjct: 123 IKAKAIAIGVGIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPTPIP--Q 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G 
Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHGV 240

Query: 194 SCIHRLTFRPLRNL 207
              HR +F P++++
Sbjct: 241 LEEHRKSFAPIKDM 254


>gi|260437013|ref|ZP_05790829.1| ribonuclease HII [Butyrivibrio crossotus DSM 2876]
 gi|292810322|gb|EFF69527.1| ribonuclease HII [Butyrivibrio crossotus DSM 2876]
          Length = 210

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 93/186 (50%), Positives = 118/186 (63%), Gaps = 5/186 (2%)

Query: 19  REKNMW-PVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKIT 76
           RE  ++  + GIDE GRG L GPVV AA+IL D  NI + INDSKK+S  KREE+Y++I 
Sbjct: 22  REYKIYGTICGIDEAGRGPLCGPVVAAAVILPDEYNILY-INDSKKLSETKREEVYKEID 80

Query: 77  SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135
             A+   +   S + ID+ NI +AT +A+  A+  L V P   L D  +IP  +  +   
Sbjct: 81  KYAVAYGVGIVSPERIDEINILQATYEAMRTAIHKLSVTPDILLNDAVTIPM-VDIKQVP 139

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           +IKGD+ S SIAAASI+AKVTRD LM    K YP+YGF  H GY TA H + IKE GP  
Sbjct: 140 IIKGDAKSQSIAAASIVAKVTRDHLMEEYDKLYPEYGFAKHKGYGTAAHIKAIKEYGPCP 199

Query: 196 IHRLTF 201
           IHR TF
Sbjct: 200 IHRRTF 205


>gi|291550686|emb|CBL26948.1| Ribonuclease HII [Ruminococcus torques L2-14]
          Length = 252

 Score =  150 bits (380), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 88/177 (49%), Positives = 115/177 (64%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84
           + GIDE GRG LAGPVV  A+IL  +     +NDSKK+S  KREELY++I   A+ + + 
Sbjct: 72  ICGIDEAGRGPLAGPVVAGAVILPKDCEILYLNDSKKLSAAKREELYDEIMEKAVAAAVG 131

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID+ NI +AT +A+  A+  L V P   L D  +IPE +  Q   +IKGD+ S+
Sbjct: 132 MASPARIDEINILQATYEAMREAISKLAVEPGILLNDAVTIPEMIIPQ-VPIIKGDAKSV 190

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SIAAASI+AKVTRDRLM    K  P+YGF  H GY + +H + IK+ GP+ IHR TF
Sbjct: 191 SIAAASILAKVTRDRLMVEYDKVMPEYGFAGHKGYGSKEHIEAIKKYGPTPIHRKTF 247


>gi|254739600|ref|ZP_05197294.1| ribonuclease HII [Bacillus anthracis str. Kruger B]
          Length = 257

 Score =  150 bits (380), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 93/195 (47%), Positives = 129/195 (66%), Gaps = 3/195 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +REK +  +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S  KRE  Y +
Sbjct: 63  ENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYGE 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I + AI I +   S Q ID+ NI++AT  A+  A+ NL   P   LID   +P  +P   
Sbjct: 123 IKAKAIAIGVGIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPAPIP--Q 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G 
Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHGV 240

Query: 194 SCIHRLTFRPLRNLS 208
              HR +F P+++++
Sbjct: 241 LEEHRKSFAPIKDMN 255


>gi|188577177|ref|YP_001914106.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521629|gb|ACD59574.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 211

 Score =  150 bits (380), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 83/182 (45%), Positives = 119/182 (65%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83
           VAG+DE GRG LAGPV VAA++ DPN     G++DSK+++ ++RE+LY +I   A+  S+
Sbjct: 2   VAGVDEAGRGPLAGPVAVAAVVFDPNKPRINGLDDSKQLTAERREQLYARIVDRALSWSV 61

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
                + ID+ NI++AT+  +  AVE +  +   A IDG  +P+ LPC A A+I GD++ 
Sbjct: 62  VLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALD 121

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I AASI+AKVTRDRLM   H ++P+Y FD H GY T  H   ++  GP   HR +F P
Sbjct: 122 RAIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYSTPMHLAALQTHGPCPQHRRSFAP 181

Query: 204 LR 205
           +R
Sbjct: 182 VR 183


>gi|332160606|ref|YP_004297183.1| ribonuclease HII [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325664836|gb|ADZ41480.1| ribonuclease HII [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330859613|emb|CBX69953.1| ribonuclease HII [Yersinia enterocolitica W22703]
          Length = 198

 Score =  150 bits (380), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 114/183 (62%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++IT  A+  S+ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEITDKALSWSLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L + P   LIDG   P+ L   + AV+KGDS   
Sbjct: 73  RAEPEEIDQLNILHATMLAMQRAVAGLHIAPDYVLIDGNRCPK-LTMPSLAVVKGDSRVA 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M     ++P+YGF  H GYPTA H   +   G +  HR +F P+
Sbjct: 132 EISAASILAKVTRDREMTELDLQFPEYGFAQHKGYPTAVHLDKLTTFGATEHHRRSFGPV 191

Query: 205 RNL 207
           + +
Sbjct: 192 KRV 194


>gi|322831602|ref|YP_004211629.1| Ribonuclease H [Rahnella sp. Y9602]
 gi|321166803|gb|ADW72502.1| Ribonuclease H [Rahnella sp. Y9602]
          Length = 198

 Score =  150 bits (380), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 85/182 (46%), Positives = 113/182 (62%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP N   G+ DSKK+S K+RE LY +I   A+  S+ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPANPIAGLADSKKLSEKRREALYIEIKEKALAWSLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  + A++KGDS   
Sbjct: 73  RAEPHEIDELNILHATMLAMQRAVAGLCITPDMVLIDGNRCPK-LPMASQAIVKGDSKVA 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M     ++P+YGF  H GYPT  H + +   G +  HR +F P+
Sbjct: 132 EISAASILAKVTRDREMVELDLQFPEYGFAKHKGYPTPVHLESLARLGATTHHRRSFSPV 191

Query: 205 RN 206
           + 
Sbjct: 192 KR 193


>gi|171779427|ref|ZP_02920391.1| hypothetical protein STRINF_01272 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282044|gb|EDT47475.1| hypothetical protein STRINF_01272 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 262

 Score =  150 bits (380), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 91/206 (44%), Positives = 126/206 (61%), Gaps = 12/206 (5%)

Query: 12  FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
             LE M+R EK ++      + GIDEVGRG LAGPVV A +IL  N     +NDSKKI  
Sbjct: 55  LRLENMLRYEKELYQAGYEAIGGIDEVGRGPLAGPVVTACVILPKNCKIKHLNDSKKIPK 114

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALID 121
           K  EE+YE++ + A+ + I    +  ID  NI++AT   +  A++ ++     P   LID
Sbjct: 115 KHHEEIYEEVLARALGVGIGVIDNNVIDDINIYEATKVGMLQAIDQIKGQVTKPDYLLID 174

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
              +  D+P Q+   IKGD+ SLSIAAASI+AKVTRDR+M    K+YP Y F+ +VGY T
Sbjct: 175 AMHLDTDIPQQSL--IKGDANSLSIAAASIVAKVTRDRMMADYAKEYPGYAFEKNVGYGT 232

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207
             H   +KE G + IHR TF P++++
Sbjct: 233 KDHLVGLKEHGITPIHRKTFEPIKSM 258


>gi|206900540|ref|YP_002251240.1| ribonuclease HII [Dictyoglomus thermophilum H-6-12]
 gi|206739643|gb|ACI18701.1| ribonuclease HII [Dictyoglomus thermophilum H-6-12]
          Length = 203

 Score =  150 bits (380), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 89/194 (45%), Positives = 126/194 (64%), Gaps = 12/194 (6%)

Query: 19  REKNMWP----VAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHKKREELYE 73
           RE+ +W     +AG+DE GRGALAGPV   A+IL P ++IP  +NDSK ++ ++REEL+E
Sbjct: 14  RERELWYYFKYIAGVDEAGRGALAGPVYSGAVILPPFSSIP--VNDSKLLTPREREELFE 71

Query: 74  KITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPE-DLP 130
            I   ++  S   A+ + I+K  I +AT  A+  AVE L++ P   LIDG   IP+ D+P
Sbjct: 72  IIKKESLCWSFGYATVEEIEKFGILQATFLAMKRAVEGLEIKPEYLLIDGNIPIPDIDIP 131

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            +   V+KGD   LSIA+ASI+AKV RD+ M+   K+YP+YGF  H GY T +H++ IK+
Sbjct: 132 QET--VVKGDRRCLSIASASIVAKVLRDKYMKELDKEYPEYGFGKHKGYATKEHREKIKD 189

Query: 191 KGPSCIHRLTFRPL 204
            G   IHR  F+ L
Sbjct: 190 LGTLVIHRKGFKLL 203


>gi|319941636|ref|ZP_08015960.1| ribonuclease HII [Sutterella wadsworthensis 3_1_45B]
 gi|319804866|gb|EFW01720.1| ribonuclease HII [Sutterella wadsworthensis 3_1_45B]
          Length = 245

 Score =  150 bits (380), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 110/188 (58%), Gaps = 6/188 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
            AG+DE GRG LAGPV  AA+ILDP N   G+ DSKK+S KKRE L   I   A+   I 
Sbjct: 36  TAGVDEAGRGPLAGPVCAAAVILDPENPIEGLADSKKLSAKKREALAPIIRERALAWGIG 95

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQ-----VIPRSALIDGRSIPEDLPCQAFAVIKG 139
            A+ + ID+ NI  AT  A+  AV  L+     V P   LIDG   P  LPC +  ++KG
Sbjct: 96  WATVEEIDRVNILNATYLAMERAVATLKSRSGSVTPEYILIDGNRRPPHLPCMSDTIVKG 155

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D    +I+AASI+AK  RD  M    +K+P YGF  H GY TA+H   +K  GP   HR 
Sbjct: 156 DDKVPAISAASILAKTARDHRMAELDQKWPAYGFAKHAGYGTAQHLDALKRLGPCPEHRT 215

Query: 200 TFRPLRNL 207
           TF P++++
Sbjct: 216 TFEPIKSM 223


>gi|109897588|ref|YP_660843.1| ribonuclease H [Pseudoalteromonas atlantica T6c]
 gi|123171510|sp|Q15WE9|RNH2_PSEA6 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|109699869|gb|ABG39789.1| RNase HII [Pseudoalteromonas atlantica T6c]
          Length = 197

 Score =  150 bits (380), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 84/181 (46%), Positives = 114/181 (62%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSKKIS KKR  L++ I  +A+ + + 
Sbjct: 5   IAGVDEVGRGPLVGDVVTAAVILDPAKPIAGLADSKKISEKKRLALFDIIMQNALAVCVG 64

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS Q ID+ NI  AT+ A+  AV+ L   P    +DG   P +    + AV+KGDS+  
Sbjct: 65  RASPQEIDELNILHATMLAMKRAVQGLATQPTFVRVDGNRCP-NWDYASEAVVKGDSLFA 123

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKVTRD  M   H  +P+YGF  H GYPT  H + + E GP   +R++F+P+
Sbjct: 124 EISAASIIAKVTRDAEMSELHNAHPEYGFAQHKGYPTKAHLEKLAELGPLSQYRMSFKPV 183

Query: 205 R 205
           +
Sbjct: 184 Q 184


>gi|329888215|ref|ZP_08266813.1| ribonuclease HII family protein [Brevundimonas diminuta ATCC 11568]
 gi|328846771|gb|EGF96333.1| ribonuclease HII family protein [Brevundimonas diminuta ATCC 11568]
          Length = 199

 Score =  150 bits (379), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 91/197 (46%), Positives = 117/197 (59%), Gaps = 4/197 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            ELEA         V G+DE GRG  AGPV  AA+IL+P+++P GI+DSK ++ K+R  L
Sbjct: 2   LELEARATWNGH--VCGVDEAGRGPWAGPVSAAAVILNPDDLPPGIDDSKALTEKRRAAL 59

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
              I S A+   +  AS + ID+ NI  AT  A+  AVE L   P  AL+DG +    LP
Sbjct: 60  EPLIKSRALAWGVGFASVEEIDELNILHATGLAMRRAVEALAHAPVHALVDG-NYRFKLP 118

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
           C    V+KGDS SLSIAAASI+AK  RDRLM      YP YGF SH GY    HQ+ ++ 
Sbjct: 119 CAVTPVVKGDSRSLSIAAASILAKTARDRLMIEMDATYPGYGFASHKGYNAPIHQKALQT 178

Query: 191 KGPSCIHRLTFRPLRNL 207
            GP   HR ++ P++ L
Sbjct: 179 LGPCPEHRRSWAPIKAL 195


>gi|189043616|sp|A0KHH7|RNH2_AERHH RecName: Full=Ribonuclease HII; Short=RNase HII
          Length = 196

 Score =  150 bits (379), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 119/181 (65%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L G VV AA+ILDP N   G+NDSKK+S KKR  L+++I   A+  S+ 
Sbjct: 11  VAGVDEVGRGPLVGDVVTAAVILDPANPIIGLNDSKKLSEKKRLALFDEIKEKALAWSVG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID+ NI  AT+ A+  AV  L + P    IDG   P  L  +A AV+KGDS+  
Sbjct: 71  RASPAEIDELNILHATMLAMQRAVAGLSIAPELVFIDGNRCPS-LSMEARAVVKGDSLVA 129

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKVTRD  M     ++P+YGF  H GYPTA+H  ++ E+GP   +R +F+P+
Sbjct: 130 AISAASILAKVTRDAEMTELDSRHPEYGFARHKGYPTAEHLAILAERGPLPEYRKSFKPV 189

Query: 205 R 205
           R
Sbjct: 190 R 190


>gi|30263840|ref|NP_846217.1| ribonuclease HII [Bacillus anthracis str. Ames]
 gi|47529265|ref|YP_020614.1| ribonuclease HII [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186687|ref|YP_029939.1| ribonuclease HII [Bacillus anthracis str. Sterne]
 gi|65321164|ref|ZP_00394123.1| COG0164: Ribonuclease HII [Bacillus anthracis str. A2012]
 gi|167642027|ref|ZP_02400257.1| ribonuclease HII [Bacillus anthracis str. A0193]
 gi|170689655|ref|ZP_02880835.1| ribonuclease HII [Bacillus anthracis str. A0465]
 gi|170709356|ref|ZP_02899770.1| ribonuclease HII [Bacillus anthracis str. A0389]
 gi|177655996|ref|ZP_02937123.1| ribonuclease HII [Bacillus anthracis str. A0174]
 gi|227813255|ref|YP_002813264.1| ribonuclease HII [Bacillus anthracis str. CDC 684]
 gi|229600963|ref|YP_002868074.1| ribonuclease HII [Bacillus anthracis str. A0248]
 gi|254683456|ref|ZP_05147316.1| ribonuclease HII [Bacillus anthracis str. CNEVA-9066]
 gi|254721977|ref|ZP_05183766.1| ribonuclease HII [Bacillus anthracis str. A1055]
 gi|254735875|ref|ZP_05193581.1| ribonuclease HII [Bacillus anthracis str. Western North America
           USA6153]
 gi|254759311|ref|ZP_05211336.1| ribonuclease HII [Bacillus anthracis str. Australia 94]
 gi|39932347|sp|Q81WJ9|RNH2_BACAN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807964|sp|C3P5N8|RNH2_BACAA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807965|sp|C3L790|RNH2_BACAC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|30258484|gb|AAP27703.1| ribonuclease HII [Bacillus anthracis str. Ames]
 gi|47504413|gb|AAT33089.1| ribonuclease HII [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180614|gb|AAT55990.1| ribonuclease HII [Bacillus anthracis str. Sterne]
 gi|167510007|gb|EDR85423.1| ribonuclease HII [Bacillus anthracis str. A0193]
 gi|170125730|gb|EDS94643.1| ribonuclease HII [Bacillus anthracis str. A0389]
 gi|170666379|gb|EDT17162.1| ribonuclease HII [Bacillus anthracis str. A0465]
 gi|172079895|gb|EDT65003.1| ribonuclease HII [Bacillus anthracis str. A0174]
 gi|227003723|gb|ACP13466.1| ribonuclease HII [Bacillus anthracis str. CDC 684]
 gi|229265371|gb|ACQ47008.1| ribonuclease HII [Bacillus anthracis str. A0248]
          Length = 257

 Score =  150 bits (379), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 93/194 (47%), Positives = 128/194 (65%), Gaps = 3/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +REK +  +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S  KRE  Y +
Sbjct: 63  ENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYGE 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I + AI I +   S Q ID+ NI++AT  A+  A+ NL   P   LID   +P  +P   
Sbjct: 123 IKAKAIAIGVGIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPAPIP--Q 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G 
Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHGV 240

Query: 194 SCIHRLTFRPLRNL 207
              HR +F P++++
Sbjct: 241 LEEHRKSFAPIKDM 254


>gi|253573503|ref|ZP_04850846.1| ribonuclease HII [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251847031|gb|EES75036.1| ribonuclease HII [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 206

 Score =  150 bits (379), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 91/197 (46%), Positives = 120/197 (60%), Gaps = 11/197 (5%)

Query: 20  EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E+  W      +AGIDEVGRG L G VV AA+IL    +   +NDSKK+S KKRE+L++ 
Sbjct: 8   EREYWQAGYSHIAGIDEVGRGCLFGDVVAAAVILPQGLVLEDVNDSKKLSAKKREKLFDL 67

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI + I S     ID+ NI +AT  A+  AVE L + P   LID   +  D+P   
Sbjct: 68  IMEQAIAVGIGSVDAATIDQINIKQATRRAMKQAVEQLSIQPEYLLIDAEKV--DVPIPQ 125

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK-KYPDYGFDSHVGYPTAKHQQVIKEKG 192
            +VIKGD+ S SIAAASI+AKVTRDRL +     +YP+YG   H GY T  H++ +   G
Sbjct: 126 LSVIKGDATSQSIAAASIVAKVTRDRLCQGEWDARYPEYGIAVHKGYATKLHREQLLALG 185

Query: 193 PSCIHRLTFRPLRNLSV 209
           P+ +HR +F  +RNL V
Sbjct: 186 PTPMHRKSF--MRNLFV 200


>gi|218904966|ref|YP_002452800.1| ribonuclease HII [Bacillus cereus AH820]
 gi|226736812|sp|B7JJB6|RNH2_BACC0 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|218537806|gb|ACK90204.1| ribonuclease HII [Bacillus cereus AH820]
          Length = 257

 Score =  150 bits (379), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 93/194 (47%), Positives = 128/194 (65%), Gaps = 3/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +REK +  +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S  KRE  Y +
Sbjct: 63  ENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYGE 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I + AI I +   S Q ID+ NI++AT  A+  A+ NL   P   LID   +P  +P   
Sbjct: 123 IKAKAIAIGVXIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPTPIP--Q 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G 
Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHGV 240

Query: 194 SCIHRLTFRPLRNL 207
              HR +F P++++
Sbjct: 241 LEEHRKSFAPIKDM 254


>gi|90961695|ref|YP_535611.1| ribonuclease HII [Lactobacillus salivarius UCC118]
 gi|122449076|sp|Q1WU07|RNH2_LACS1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|90820889|gb|ABD99528.1| Ribonuclease HII [Lactobacillus salivarius UCC118]
 gi|300214494|gb|ADJ78910.1| Ribonuclease HII (RNase HII) [Lactobacillus salivarius CECT 5713]
          Length = 255

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/194 (44%), Positives = 131/194 (67%), Gaps = 8/194 (4%)

Query: 20  EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E+++W      +AG+DEVGRG LAGPVV AA+IL  +   F +NDSK++S KKREELY+K
Sbjct: 61  ERDLWDKGIEYIAGVDEVGRGPLAGPVVTAAVILPHDFDVFEVNDSKQLSEKKREELYKK 120

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   A+ +S+  + +  ID+ NI++AT  A+  A+E+L + P+  ++D  +I   +P   
Sbjct: 121 ILEKAVAVSVGLSDNNLIDEVNIYEATRLAMKQAIESLNITPQKIIVDAMTIDTKIP--Q 178

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGD+ S S+AAASI+AKVTRD LM+   + YP YGF+ + GY T +H + ++ KG 
Sbjct: 179 LRLIKGDAKSASVAAASIVAKVTRDHLMQFYARIYPGYGFEKNDGYGTKQHLEGLENKGV 238

Query: 194 SCIHRLTFRPLRNL 207
           + IHR +F P++ +
Sbjct: 239 TPIHRQSFEPVKKI 252


>gi|91205326|ref|YP_537681.1| ribonuclease HII [Rickettsia bellii RML369-C]
 gi|157826929|ref|YP_001495993.1| ribonuclease HII [Rickettsia bellii OSU 85-389]
 gi|122425777|sp|Q1RJ72|RNH2_RICBR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166226647|sp|A8GVS9|RNH2_RICB8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|91068870|gb|ABE04592.1| Ribonuclease HII [Rickettsia bellii RML369-C]
 gi|157802233|gb|ABV78956.1| ribonuclease HII [Rickettsia bellii OSU 85-389]
          Length = 196

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/176 (53%), Positives = 116/176 (65%), Gaps = 2/176 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           +AGIDE GRG LAGPVV AA+I+D NNI  GI DSKK+S KKRE LYE+IT++ I +   
Sbjct: 17  LAGIDEAGRGPLAGPVVAAAVIVDQNNIIAGIKDSKKLSKKKRELLYEQITANYIWATGI 76

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            SH  IDK NI +AT  A   A ENL   P   L+DG     D   +  ++I GD++SLS
Sbjct: 77  ISHTEIDKINILEATKKACILAAENLSTKPEIVLVDGNMQFSD--KRFISIINGDNLSLS 134

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           IAAASIIAKVTRDRLM     ++P Y +  + GY T +H Q IKE G S  HRL+F
Sbjct: 135 IAAASIIAKVTRDRLMLELSNEFPQYLWHKNSGYGTKEHAQAIKEYGLSPYHRLSF 190


>gi|199599536|ref|ZP_03212924.1| Ribonuclease HII [Lactobacillus rhamnosus HN001]
 gi|258508404|ref|YP_003171155.1| ribonuclease HII [Lactobacillus rhamnosus GG]
 gi|199589577|gb|EDY97695.1| Ribonuclease HII [Lactobacillus rhamnosus HN001]
 gi|257148331|emb|CAR87304.1| Ribonuclease HII [Lactobacillus rhamnosus GG]
 gi|259649719|dbj|BAI41881.1| ribonuclease HII [Lactobacillus rhamnosus GG]
          Length = 252

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/192 (44%), Positives = 122/192 (63%), Gaps = 8/192 (4%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           E+ +W     VAG+DEVGRG LAGPVV AA+IL P+   + +NDSK+++  +R+ LY  I
Sbjct: 60  ERKLWKMYSHVAGLDEVGRGPLAGPVVTAAVIL-PHQFKWPVNDSKQLTAHERDVLYPHI 118

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
            + AI + I  A +  ID+ NI+ AT  A+  AV +L+V P   L+D   +P +LP +  
Sbjct: 119 LTEAIAVGIGVADNHEIDRENIYHATELAMAQAVSHLRVAPEFLLVDAMHVPVNLPQERL 178

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
             IKGD+ S+SIAAASI+AKV RDRLM +  + YP Y F  ++GY T  H   +   G +
Sbjct: 179 --IKGDANSISIAAASIVAKVIRDRLMVMYDRVYPGYDFKDNMGYGTKAHLAGLATHGVT 236

Query: 195 CIHRLTFRPLRN 206
            IHR +F P+R+
Sbjct: 237 PIHRRSFGPVRH 248


>gi|302392411|ref|YP_003828231.1| Ribonuclease H [Acetohalobium arabaticum DSM 5501]
 gi|302204488|gb|ADL13166.1| Ribonuclease H [Acetohalobium arabaticum DSM 5501]
          Length = 315

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/186 (43%), Positives = 113/186 (60%), Gaps = 4/186 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83
           + G+DE GRG LAGPV  A +IL P +I   G+NDSK++S  KREE + K+   A+ I +
Sbjct: 78  IGGVDEAGRGPLAGPVAAAVVIL-PEDIWMPGLNDSKQLSEAKREEFFAKLQEEAVDIGV 136

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
                  ID+ NI  A   A+  A+ NL+  P   L+DG  IPE +  +   ++ GD  S
Sbjct: 137 GLVDSDRIDEVNIRNANYQAMREAISNLEQTPDYLLVDGEEIPE-IGIEQRRLVDGDQRS 195

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           +SIAAASIIAKVTRDR++    ++YP+Y F  H GY TA H   ++E GP  IHR +F  
Sbjct: 196 VSIAAASIIAKVTRDRMLVEYDQEYPEYNFVQHKGYGTADHIAALEEHGPCPIHRYSFSK 255

Query: 204 LRNLSV 209
           +R  ++
Sbjct: 256 VREAAL 261


>gi|315633618|ref|ZP_07888908.1| ribonuclease HII [Aggregatibacter segnis ATCC 33393]
 gi|315477660|gb|EFU68402.1| ribonuclease HII [Aggregatibacter segnis ATCC 33393]
          Length = 199

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/183 (45%), Positives = 116/183 (63%), Gaps = 1/183 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L E+I   A+  ++ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLLLAEEIKQKALAWALG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  A++ A+  AV++L++ P   L+DG  IP +L   A AV+KGD++  
Sbjct: 73  RAEPHEIDELNILHASMLAMERAVKHLKIQPHFVLVDGNRIPSNLSIPAQAVVKGDALVA 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M    ++YP Y F  H GYPT  H + I E G    +R +F P+
Sbjct: 133 EISAASILAKVARDQEMLELDQQYPQYAFAQHKGYPTKLHLEKIAEFGLLPQYRRSFAPV 192

Query: 205 RNL 207
           + L
Sbjct: 193 KKL 195


>gi|51473401|ref|YP_067158.1| ribonuclease HII [Rickettsia typhi str. Wilmington]
 gi|73917831|sp|Q68XG6|RNH2_RICTY RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|51459713|gb|AAU03676.1| Endoribonuclease H [Rickettsia typhi str. Wilmington]
          Length = 193

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/179 (47%), Positives = 114/179 (63%), Gaps = 2/179 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
           + VAG+DE GRG+L GPVV +A+I+D  +I  GI DSKK+S  KR+ LYE+ITS+ + S 
Sbjct: 15  YIVAGVDEAGRGSLVGPVVASAVIIDKVDIISGIKDSKKLSKNKRDILYEQITSNYVWST 74

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +   H  ID  NI +AT  A   AV NL + P   L+DG     D+  +  ++I GD++S
Sbjct: 75  AIIEHTEIDDINILEATKKACTIAVANLSLKPEKILVDGNMKFSDV--RFISIINGDNLS 132

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           LSIAAASIIAKVTRDRLM     +YP Y +  + GY T +H + I   G S  HR +F+
Sbjct: 133 LSIAAASIIAKVTRDRLMLELSAEYPQYLWHKNYGYGTREHIEAINTHGLSSYHRKSFK 191


>gi|229552204|ref|ZP_04440929.1| ribonuclease H [Lactobacillus rhamnosus LMS2-1]
 gi|258539618|ref|YP_003174117.1| ribonuclease HII [Lactobacillus rhamnosus Lc 705]
 gi|229314426|gb|EEN80399.1| ribonuclease H [Lactobacillus rhamnosus LMS2-1]
 gi|257151294|emb|CAR90266.1| Ribonuclease HII [Lactobacillus rhamnosus Lc 705]
          Length = 252

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/192 (44%), Positives = 122/192 (63%), Gaps = 8/192 (4%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           E+ +W     VAG+DEVGRG LAGPVV AA+IL P+   + +NDSK+++  +R+ LY  I
Sbjct: 60  ERKLWTMYSHVAGLDEVGRGPLAGPVVTAAVIL-PHQFKWPVNDSKQLTAHERDVLYPHI 118

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
            + AI + I  A +  ID+ NI+ AT  A+  AV +L+V P   L+D   +P +LP +  
Sbjct: 119 LTEAIAVGIGVADNHEIDRENIYHATELAMAQAVSHLRVAPEFLLVDAMHVPVNLPQERL 178

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
             IKGD+ S+SIAAASI+AKV RDRLM +  + YP Y F  ++GY T  H   +   G +
Sbjct: 179 --IKGDANSISIAAASIVAKVIRDRLMVMYDQVYPGYDFKDNMGYGTKAHLAGLAAHGVT 236

Query: 195 CIHRLTFRPLRN 206
            IHR +F P+R+
Sbjct: 237 PIHRRSFGPVRH 248


>gi|296330821|ref|ZP_06873296.1| ribonuclease HII [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674339|ref|YP_003866011.1| ribonuclease HII [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151826|gb|EFG92700.1| ribonuclease HII [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305412583|gb|ADM37702.1| ribonuclease HII [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 255

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/194 (41%), Positives = 119/194 (61%), Gaps = 3/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E + R K    +AG+DEVGRG LAGPVV +A+IL       G+ DSKK+S KKR+E YE 
Sbjct: 63  ERLARNKGFRLIAGVDEVGRGPLAGPVVASAVILPEECEILGLTDSKKLSEKKRDEYYEL 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   A+ + I       ID+ NI++A+  A+  A+ +L   P   L+D  ++P  +    
Sbjct: 123 IMKEALAVGIGIVEASVIDEVNIYEASKMAMVKAIHDLSDTPDYLLVDAMTLP--VGIDQ 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++IKGD+ S+SIAA + IAKVTRDR+M    + YP YGF+ + GY T +H + +   GP
Sbjct: 181 SSIIKGDAKSVSIAAGACIAKVTRDRMMSAYAETYPIYGFEKNKGYGTKEHLEALAAHGP 240

Query: 194 SCIHRLTFRPLRNL 207
           + +HR TF P+++ 
Sbjct: 241 TELHRKTFAPVQSF 254


>gi|117619478|ref|YP_855728.1| ribonuclease HII [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117560885|gb|ABK37833.1| ribonuclease HII [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 211

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 119/181 (65%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L G VV AA+ILDP N   G+NDSKK+S KKR  L+++I   A+  S+ 
Sbjct: 26  VAGVDEVGRGPLVGDVVTAAVILDPANPIIGLNDSKKLSEKKRLALFDEIKEKALAWSVG 85

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID+ NI  AT+ A+  AV  L + P    IDG   P  L  +A AV+KGDS+  
Sbjct: 86  RASPAEIDELNILHATMLAMQRAVAGLSIAPELVFIDGNRCPS-LSMEARAVVKGDSLVA 144

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKVTRD  M     ++P+YGF  H GYPTA+H  ++ E+GP   +R +F+P+
Sbjct: 145 AISAASILAKVTRDAEMTELDSRHPEYGFARHKGYPTAEHLAILAERGPLPEYRKSFKPV 204

Query: 205 R 205
           R
Sbjct: 205 R 205


>gi|229157413|ref|ZP_04285491.1| Ribonuclease [Bacillus cereus ATCC 4342]
 gi|228626140|gb|EEK82889.1| Ribonuclease [Bacillus cereus ATCC 4342]
          Length = 257

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/194 (46%), Positives = 130/194 (67%), Gaps = 3/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y++
Sbjct: 63  ENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYDE 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I + A+ I +   S + ID+ NI++AT  A+  AV NL   P+  LID   +P  +P   
Sbjct: 123 IKAQAVAIGVGIVSPRVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPTPIP--Q 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G 
Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHGI 240

Query: 194 SCIHRLTFRPLRNL 207
              HR +F P++++
Sbjct: 241 LEEHRKSFAPIKDM 254


>gi|90407916|ref|ZP_01216091.1| ribonuclease HII [Psychromonas sp. CNPT3]
 gi|90311007|gb|EAS39117.1| ribonuclease HII [Psychromonas sp. CNPT3]
          Length = 204

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/184 (46%), Positives = 116/184 (63%), Gaps = 4/184 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+ILD NN   G+ DSKK+S KK   L+ +I   A+ ISI 
Sbjct: 19  IAGVDEVGRGPLVGDVVTAAVILDANNPIEGLADSKKLSEKKLALLFTEIQEKALCISIG 78

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            AS   ID  NI +AT+ A+  AV+ L + P    IDG   P  ++ C+A  ++KGD+  
Sbjct: 79  RASPTEIDDINILQATMLAMQRAVQGLSLQPNFVFIDGNRCPTLNMACEA--IVKGDARV 136

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASIIAKVTRD  MR    +YP YGF  H GYPT  H + +++ GP   +R +F+P
Sbjct: 137 AEISAASIIAKVTRDGEMRELDARYPQYGFAKHKGYPTKAHFEALEKYGPIDEYRKSFKP 196

Query: 204 LRNL 207
           ++ +
Sbjct: 197 VKKV 200


>gi|152980735|ref|YP_001353734.1| ribonuclease HII [Janthinobacterium sp. Marseille]
 gi|166225192|sp|A6SZN7|RNH2_JANMA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|151280812|gb|ABR89222.1| ribonuclease HII [Janthinobacterium sp. Marseille]
          Length = 210

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/201 (43%), Positives = 122/201 (60%), Gaps = 5/201 (2%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E P+  L + + E     + G+DE GRG LAGPV  AA+ILDP     G+ DSKK++  K
Sbjct: 4   EDPNLSLFSFLDEDI---ICGVDEAGRGPLAGPVFAAAVILDPMRPIDGLRDSKKLTEVK 60

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R+ L  +I   A+  SI+  S + ID  NI +AT+ A+  A+E L V+P  ALIDG   P
Sbjct: 61  RDALAIEIKQYALSWSIAQCSEEEIDSLNILQATMLAMRRAIEGLHVVPTLALIDGNRCP 120

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
                ++ A+IKGD    +I+AASI+AK  RD  + + H +YP Y FD H GYPTA H +
Sbjct: 121 VT-SVRSEAIIKGDDKVQAISAASILAKTARDHALGLLHIQYPHYAFDQHKGYPTALHLE 179

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            ++E G S +HR ++ P+R L
Sbjct: 180 RLREHGVSPVHRKSYAPVRAL 200


>gi|282850261|ref|ZP_06259640.1| ribonuclease HII [Veillonella parvula ATCC 17745]
 gi|282579754|gb|EFB85158.1| ribonuclease HII [Veillonella parvula ATCC 17745]
          Length = 265

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/197 (44%), Positives = 131/197 (66%), Gaps = 2/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           ++ E M  ++ ++ VAG+DEVGRG +AGPV VAA+IL P  +  G+NDSKK++ +KRE L
Sbjct: 63  YDYEGMFYDQGIYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREAL 122

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I   A+ +S  S   + ID+ NI++AT  A+Y A+  L V   + + D   +P DL 
Sbjct: 123 YDIIMDEAVAVSCISYGPEKIDELNIYEATRQAMYEAIRTLSVPAEAVVADAMKLP-DLR 181

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGDS S +IAAASIIAKVTRDR M+    ++P YGF  H GY T  H++ I++
Sbjct: 182 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDDEFPGYGFGIHKGYYTELHKEAIEQ 241

Query: 191 KGPSCIHRLTFRPLRNL 207
           +G + +HR +F P++++
Sbjct: 242 QGVTPLHRKSFEPIKSI 258


>gi|91792925|ref|YP_562576.1| ribonuclease H [Shewanella denitrificans OS217]
 gi|123356872|sp|Q12NX3|RNH2_SHEDO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|91714927|gb|ABE54853.1| Ribonuclease H [Shewanella denitrificans OS217]
          Length = 214

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/189 (46%), Positives = 117/189 (61%), Gaps = 6/189 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDPN    G+ DSKK+S K+ + LY +I   A+ +S+ 
Sbjct: 26  VAGVDEVGRGPLIGDVVTAAVILDPNRPIAGLMDSKKLSEKRLQALYLEIMDKALAVSVG 85

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE---DLPCQAFAVIKGDS 141
            A+   ID+ NI  AT+ A+  AV  L + P   L+DG  +PE   +   +  A+IKGD 
Sbjct: 86  RANPSEIDELNILHATMLAMSRAVAGLNIKPERVLVDGNRLPEFALNAEVERHAIIKGDG 145

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +  +I+AASIIAKVTRD  M     +YP+YGF  H GYPT  H + + + G    HR +F
Sbjct: 146 LVPAISAASIIAKVTRDEEMLQLDARYPEYGFAKHKGYPTKTHFEALAQFGVLPEHRKSF 205

Query: 202 RP--LRNLS 208
           +P  LR LS
Sbjct: 206 KPVALRLLS 214


>gi|329296122|ref|ZP_08253458.1| ribonuclease H [Plautia stali symbiont]
          Length = 208

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 113/182 (62%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  L+++I   A+  S+ 
Sbjct: 12  IAGVDEVGRGPLVGAVVTAAVILDPARPIAGLADSKKLSEKRRLALFDEIKEKALAWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L + P   LIDG   P  LP  + AV+KGDS+  
Sbjct: 72  RAEPEEIDQLNILHATMLAMQRAVAGLHIAPDFILIDGNRCPA-LPMPSQAVVKGDSLVR 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKVT DR M      +P YGF  H GYPTA H + + + G +  HR +F P+
Sbjct: 131 EISAASIIAKVTCDREMAELDLLFPQYGFAQHKGYPTALHMEKLTQFGATPHHRRSFAPV 190

Query: 205 RN 206
           RN
Sbjct: 191 RN 192


>gi|294791913|ref|ZP_06757061.1| ribonuclease HII [Veillonella sp. 6_1_27]
 gi|294457143|gb|EFG25505.1| ribonuclease HII [Veillonella sp. 6_1_27]
          Length = 279

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/197 (44%), Positives = 131/197 (66%), Gaps = 2/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           ++ E M  ++ ++ VAG+DEVGRG +AGPV VAA+IL P  +  G+NDSKK++ +KRE L
Sbjct: 77  YDYEGMFYDQGIYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREAL 136

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I   A+ +S  S   + ID+ NI++AT  A+Y A+  L V   + + D   +P DL 
Sbjct: 137 YDIIMDEAVAVSCISYGPEKIDELNIYEATRQAMYEAIRTLSVPAEAVVADAMKLP-DLR 195

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGDS S +IAAASIIAKVTRDR M+    ++P YGF  H GY T  H++ I++
Sbjct: 196 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDDEFPGYGFGIHKGYYTELHKEAIEQ 255

Query: 191 KGPSCIHRLTFRPLRNL 207
           +G + +HR +F P++++
Sbjct: 256 QGVTPLHRKSFEPIKSI 272


>gi|269959037|ref|YP_003328826.1| ribonuclease HII [Anaplasma centrale str. Israel]
 gi|269848868|gb|ACZ49512.1| ribonuclease HII [Anaplasma centrale str. Israel]
          Length = 223

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/202 (43%), Positives = 122/202 (60%), Gaps = 3/202 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKK 67
           P F +E  ++   +  + G+DEVG GA+AGPVV AA+ L      +   I DSK +S KK
Sbjct: 2   PSFAIEDQLKSDTISVIVGVDEVGYGAIAGPVVAAAVYLPEREHGYIGDIKDSKMLSPKK 61

Query: 68  REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           R+EL+ KI S A   +  A    I+KHNI  A+  ++  A++NL V     L+DG   P 
Sbjct: 62  RDELFCKIVSHAKYGVGFARVCEIEKHNILVASHISMKRALQNLGVKADLVLVDGSRTP- 120

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           +LP     ++ GDSIS SIAAASI+AKVTRDR M+  H+++P+YG++ + GY T  H   
Sbjct: 121 NLPWAIKTIVGGDSISTSIAAASIVAKVTRDRFMKRLHEQHPEYGWNQNCGYGTKAHMIS 180

Query: 188 IKEKGPSCIHRLTFRPLRNLSV 209
           IK  G +  HR TF P++ LS 
Sbjct: 181 IKLHGKTTHHRSTFAPVKQLST 202


>gi|166712746|ref|ZP_02243953.1| ribonuclease HII [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 251

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/182 (45%), Positives = 118/182 (64%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII-SI 83
           VAG+DE GRG LAGPV VAA++ DPN     G++DSK+++ ++RE LY +I   A+  S+
Sbjct: 42  VAGVDEAGRGPLAGPVAVAAVVFDPNKPRINGLDDSKQLTAERREHLYARIVDRALAWSV 101

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
                + ID+ NI++AT+  +  AVE +  +   A IDG  +P+ LPC A A+I GD++ 
Sbjct: 102 VLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALD 161

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I AASI+AKVTRDRLM   H ++P+Y FD H GY T  H   ++  GP   HR +F P
Sbjct: 162 RTIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYSTPMHLAALQTHGPCPQHRRSFAP 221

Query: 204 LR 205
           +R
Sbjct: 222 VR 223


>gi|15799865|ref|NP_285877.1| ribonuclease HII [Escherichia coli O157:H7 EDL933]
 gi|15829439|ref|NP_308212.1| ribonuclease HII [Escherichia coli O157:H7 str. Sakai]
 gi|168752165|ref|ZP_02777187.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4113]
 gi|168758706|ref|ZP_02783713.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4401]
 gi|168764954|ref|ZP_02789961.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4501]
 gi|168769950|ref|ZP_02794957.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4486]
 gi|168777709|ref|ZP_02802716.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4196]
 gi|168782075|ref|ZP_02807082.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4076]
 gi|168789292|ref|ZP_02814299.1| ribonuclease HII [Escherichia coli O157:H7 str. EC869]
 gi|168802471|ref|ZP_02827478.1| ribonuclease HII [Escherichia coli O157:H7 str. EC508]
 gi|187731145|ref|YP_001878985.1| ribonuclease HII [Shigella boydii CDC 3083-94]
 gi|194435006|ref|ZP_03067247.1| ribonuclease HII [Shigella dysenteriae 1012]
 gi|195939879|ref|ZP_03085261.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4024]
 gi|208805984|ref|ZP_03248321.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4206]
 gi|208813645|ref|ZP_03254974.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4045]
 gi|208821027|ref|ZP_03261347.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4042]
 gi|209400402|ref|YP_002268791.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4115]
 gi|217325357|ref|ZP_03441441.1| ribonuclease HII [Escherichia coli O157:H7 str. TW14588]
 gi|218698603|ref|YP_002406232.1| ribonuclease HII [Escherichia coli IAI39]
 gi|254791316|ref|YP_003076153.1| ribonuclease HII [Escherichia coli O157:H7 str. TW14359]
 gi|261226937|ref|ZP_05941218.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255341|ref|ZP_05947874.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291281005|ref|YP_003497823.1| Ribonuclease HII [Escherichia coli O55:H7 str. CB9615]
 gi|24638183|sp|Q8X8X6|RNH2_ECO57 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|226736818|sp|B7NIE5|RNH2_ECO7I RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238056776|sp|B5Z0G2|RNH2_ECO5E RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238689501|sp|B2U326|RNH2_SHIB3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|12512911|gb|AAG54485.1|AE005194_6 RNAse HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           O157:H7 str. EDL933]
 gi|13359641|dbj|BAB33608.1| RNAse HII [Escherichia coli O157:H7 str. Sakai]
 gi|187428137|gb|ACD07411.1| ribonuclease HII [Shigella boydii CDC 3083-94]
 gi|187767120|gb|EDU30964.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4196]
 gi|188013909|gb|EDU52031.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4113]
 gi|189000369|gb|EDU69355.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4076]
 gi|189354506|gb|EDU72925.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4401]
 gi|189361051|gb|EDU79470.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4486]
 gi|189365141|gb|EDU83557.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4501]
 gi|189371107|gb|EDU89523.1| ribonuclease HII [Escherichia coli O157:H7 str. EC869]
 gi|189375551|gb|EDU93967.1| ribonuclease HII [Escherichia coli O157:H7 str. EC508]
 gi|194416742|gb|EDX32870.1| ribonuclease HII [Shigella dysenteriae 1012]
 gi|208725785|gb|EDZ75386.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4206]
 gi|208734922|gb|EDZ83609.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4045]
 gi|208741150|gb|EDZ88832.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4042]
 gi|209161802|gb|ACI39235.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4115]
 gi|209745714|gb|ACI71164.1| RNAse HII [Escherichia coli]
 gi|209745716|gb|ACI71165.1| RNAse HII [Escherichia coli]
 gi|209745718|gb|ACI71166.1| RNAse HII [Escherichia coli]
 gi|209745720|gb|ACI71167.1| RNAse HII [Escherichia coli]
 gi|209745722|gb|ACI71168.1| RNAse HII [Escherichia coli]
 gi|217321578|gb|EEC30002.1| ribonuclease HII [Escherichia coli O157:H7 str. TW14588]
 gi|218368589|emb|CAR16326.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           IAI39]
 gi|254590716|gb|ACT70077.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           O157:H7 str. TW14359]
 gi|290760878|gb|ADD54839.1| Ribonuclease HII [Escherichia coli O55:H7 str. CB9615]
 gi|320173336|gb|EFW48539.1| Ribonuclease HII [Shigella dysenteriae CDC 74-1112]
 gi|320180910|gb|EFW55832.1| Ribonuclease HII [Shigella boydii ATCC 9905]
 gi|320186605|gb|EFW61330.1| Ribonuclease HII [Shigella flexneri CDC 796-83]
 gi|320190291|gb|EFW64941.1| Ribonuclease HII [Escherichia coli O157:H7 str. EC1212]
 gi|320639989|gb|EFX09574.1| ribonuclease HII [Escherichia coli O157:H7 str. G5101]
 gi|320644759|gb|EFX13803.1| ribonuclease HII [Escherichia coli O157:H- str. 493-89]
 gi|320652915|gb|EFX21153.1| ribonuclease HII [Escherichia coli O157:H- str. H 2687]
 gi|320658303|gb|EFX26032.1| ribonuclease HII [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320663613|gb|EFX30897.1| ribonuclease HII [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668926|gb|EFX35721.1| ribonuclease HII [Escherichia coli O157:H7 str. LSU-61]
 gi|326339762|gb|EGD63570.1| Ribonuclease HII [Escherichia coli O157:H7 str. 1044]
 gi|326345096|gb|EGD68839.1| Ribonuclease HII [Escherichia coli O157:H7 str. 1125]
 gi|332095122|gb|EGJ00154.1| ribonuclease HII family protein [Shigella boydii 5216-82]
 gi|332097620|gb|EGJ02597.1| ribonuclease HII family protein [Shigella dysenteriae 155-74]
          Length = 198

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 111/182 (60%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L E+I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  A AV+KGDS   
Sbjct: 72  RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMAVVKGDSRVP 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|145300047|ref|YP_001142888.1| ribonuclease HII [Aeromonas salmonicida subsp. salmonicida A449]
 gi|166225165|sp|A4SQG8|RNH2_AERS4 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|142852819|gb|ABO91140.1| ribonuclease HII [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 196

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 120/182 (65%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L G VV AA+ILDP N   G+ DSKK+S KKR  L+++I   A+  +I 
Sbjct: 11  VAGVDEVGRGPLVGDVVTAAVILDPANPITGLADSKKLSEKKRLALFDEIKQKALAWAIG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID+ NI  AT+ A+  AV  L + P    IDG   P  LP +A AV+KGDS+  
Sbjct: 71  RASPEEIDELNILHATMLAMQRAVAGLSITPELVFIDGNRCPS-LPMEARAVVKGDSLVA 129

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKVTRD  M     ++P+YGF  H GYPT +H  ++ E+GP   +R +F+P+
Sbjct: 130 AISAASILAKVTRDAEMTELDSRHPEYGFARHKGYPTPEHLAILAERGPLPAYRKSFKPV 189

Query: 205 RN 206
           R+
Sbjct: 190 RH 191


>gi|323935023|gb|EGB31396.1| ribonuclease HII [Escherichia coli E1520]
          Length = 198

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 111/182 (60%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L E+I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  A AV+KGDS   
Sbjct: 72  RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMAVVKGDSRVP 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDSEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|227890783|ref|ZP_04008588.1| ribonuclease HII [Lactobacillus salivarius ATCC 11741]
 gi|227867192|gb|EEJ74613.1| ribonuclease HII [Lactobacillus salivarius ATCC 11741]
          Length = 255

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/194 (44%), Positives = 131/194 (67%), Gaps = 8/194 (4%)

Query: 20  EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E+++W      +AG+DEVGRG LAGPVV AA+IL  +   F +NDSK++S KKREELY+K
Sbjct: 61  ERDLWNKGIEYIAGVDEVGRGPLAGPVVTAAVILPHDFDIFEVNDSKQLSEKKREELYKK 120

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   A+ +S+  + +  ID+ NI++AT  A+  A+E+L + P+  ++D  +I   +P   
Sbjct: 121 ILEKAVAVSVGLSDNNLIDEVNIYEATRLAMKQAIESLNITPQKIIVDAMTIDTKIP--Q 178

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGD+ S S+AAASI+AKVTRD LM+   + YP YGF+ + GY T +H + ++ KG 
Sbjct: 179 LRLIKGDAKSASVAAASIVAKVTRDHLMQFYARIYPGYGFEKNDGYGTKQHLEGLENKGV 238

Query: 194 SCIHRLTFRPLRNL 207
           + IHR +F P++ +
Sbjct: 239 TPIHRQSFEPVKKI 252


>gi|89098661|ref|ZP_01171543.1| ribonuclease HII [Bacillus sp. NRRL B-14911]
 gi|89086623|gb|EAR65742.1| ribonuclease HII [Bacillus sp. NRRL B-14911]
          Length = 255

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/190 (44%), Positives = 122/190 (64%), Gaps = 4/190 (2%)

Query: 20  EKNMWP-VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78
           +K+ W  +AG DE GRG LAGPV+ AA+IL       G++DSKK+S  KR+E Y++I S 
Sbjct: 67  KKSGWTMIAGTDEAGRGPLAGPVIAAAVILPEGFYLPGLDDSKKLSEAKRDEFYKEIMSG 126

Query: 79  A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137
           A  + I   S   ID+ NI +A+  A+  A+ ++   P   L D  ++  D+P QA AVI
Sbjct: 127 ASAVGIGRISAGEIDRINILQASKKAMLLALADMGSTPDYLLTD--AVDLDVPYQAEAVI 184

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGDS S++IAAAS+IAKVTRDR MR   ++YP YGF  ++GY T +H + I++ G    H
Sbjct: 185 KGDSKSVTIAAASVIAKVTRDRYMRELDEQYPHYGFGRNMGYGTRQHLEAIEKHGIINEH 244

Query: 198 RLTFRPLRNL 207
           R +F P++ +
Sbjct: 245 RKSFAPIKGM 254


>gi|218547638|ref|YP_002381429.1| ribonuclease HII [Escherichia fergusonii ATCC 35469]
 gi|293418068|ref|ZP_06660690.1| ribonuclease HII [Escherichia coli B185]
 gi|331651088|ref|ZP_08352116.1| ribonuclease HII [Escherichia coli M718]
 gi|331661557|ref|ZP_08362481.1| ribonuclease HII [Escherichia coli TA143]
 gi|226736822|sp|B7LW62|RNH2_ESCF3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|218355179|emb|CAQ87786.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia
           fergusonii ATCC 35469]
 gi|291430786|gb|EFF03784.1| ribonuclease HII [Escherichia coli B185]
 gi|331051542|gb|EGI23591.1| ribonuclease HII [Escherichia coli M718]
 gi|331061472|gb|EGI33435.1| ribonuclease HII [Escherichia coli TA143]
          Length = 198

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 111/182 (60%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L E+I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  A AV+KGDS   
Sbjct: 72  RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMAVVKGDSRVP 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|259503396|ref|ZP_05746298.1| ribonuclease HII [Lactobacillus antri DSM 16041]
 gi|259168641|gb|EEW53136.1| ribonuclease HII [Lactobacillus antri DSM 16041]
          Length = 255

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/197 (42%), Positives = 116/197 (58%), Gaps = 3/197 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           R  F  E  + +     VAG+DEVGRG LAGPVV  A+IL P+    G+ DSK+++  +R
Sbjct: 57  RQRFHYERQLWQNGCRYVAGMDEVGRGPLAGPVVTCAVILGPDFDLIGVTDSKQLTRHER 116

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E+LY +I   A+ +SI+    + ID+ NI+ AT DA+  AV NL   P   ++D   +P 
Sbjct: 117 EQLYLRIVDEAVEVSIAVNDREAIDRLNIYAATQDAMMRAVRNLNHRPDHLIVDAVPLPF 176

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           D P     +IKGD  S+S+AAASI+AK  RD LMR   + YP YGF  ++GY T  H   
Sbjct: 177 DYP--QTTLIKGDQKSISVAAASIVAKEYRDHLMRDYDRVYPGYGFAENMGYGTKAHLAG 234

Query: 188 IKEKGPSCIHRLTFRPL 204
           +   G   IHR +F P+
Sbjct: 235 LARLGACPIHRRSFSPV 251


>gi|167837027|ref|ZP_02463910.1| ribonuclease HII [Burkholderia thailandensis MSMB43]
          Length = 214

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/181 (48%), Positives = 121/181 (66%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           V G+DE GRG LAGPVV AA++LDP     G++DSK +S KKRE L+++I + A+   I+
Sbjct: 28  VCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAHALGYCIA 87

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS + ID  NI  AT+ A+  AVE L V P  A IDG   P  L  ++ A++ GD++  
Sbjct: 88  SASVEEIDTLNILHATMLAMKRAVEGLAVRPTLAKIDGNRCPA-LAIRSEAIVGGDALVP 146

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI+AASI+AKVTRDR++   H+++P YGFD+H GY T +H   ++  GP   HR +F P+
Sbjct: 147 SISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALRAHGPCEHHRRSFAPV 206

Query: 205 R 205
           R
Sbjct: 207 R 207


>gi|325916627|ref|ZP_08178890.1| RNase HII [Xanthomonas vesicatoria ATCC 35937]
 gi|325537181|gb|EGD08914.1| RNase HII [Xanthomonas vesicatoria ATCC 35937]
          Length = 241

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/183 (45%), Positives = 120/183 (65%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII-SI 83
           VAG+DE GRG LAGPV VAA++ DP+     G++DSK+++ ++RE+LY +I   A+  S+
Sbjct: 33  VAGVDEAGRGPLAGPVAVAAVVFDPSKPRINGLDDSKQLTAERREQLYARIVDRALAWSV 92

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
              + + ID+ NI++AT+  +  AVE +  +   A IDG  +P+ LPC A A+I GD++ 
Sbjct: 93  VLIASEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALD 152

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI AASI+AKVTRDRLM   H ++P+Y FD H GY T  H   ++  GP   HR +F P
Sbjct: 153 RSIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYATPVHLAALRSHGPCPQHRRSFAP 212

Query: 204 LRN 206
           +R 
Sbjct: 213 VRR 215


>gi|300902002|ref|ZP_07120029.1| ribonuclease HII [Escherichia coli MS 84-1]
 gi|301305319|ref|ZP_07211415.1| ribonuclease HII [Escherichia coli MS 124-1]
 gi|300405888|gb|EFJ89426.1| ribonuclease HII [Escherichia coli MS 84-1]
 gi|300839424|gb|EFK67184.1| ribonuclease HII [Escherichia coli MS 124-1]
 gi|315254985|gb|EFU34953.1| ribonuclease HII [Escherichia coli MS 85-1]
          Length = 198

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 111/182 (60%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L E+I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  A AV+KGDS   
Sbjct: 72  RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMAVVKGDSRVP 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|317129225|ref|YP_004095507.1| ribonuclease H [Bacillus cellulosilyticus DSM 2522]
 gi|315474173|gb|ADU30776.1| Ribonuclease H [Bacillus cellulosilyticus DSM 2522]
          Length = 260

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/214 (40%), Positives = 127/214 (59%), Gaps = 14/214 (6%)

Query: 4   NSIPERPHFELEAM-----VREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNI 53
           N   E+ H ELE M       E+++W      + G+DEVGRG LAGPVV + +IL P   
Sbjct: 45  NRKKEKQH-ELEKMFYEMRTYEEDLWKEGYHYIGGVDEVGRGPLAGPVVASCVILSPEFY 103

Query: 54  PFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ 112
             G+ DSK++S +KREE Y  I   AI + I  A+ + ID+ NI++AT  A+  A+  L 
Sbjct: 104 LAGLTDSKQLSKQKREEFYCNIMEEAISVGIGIATSEEIDQINIYEATKLAMKRAIHKLS 163

Query: 113 VIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172
           + P   L+D   +P  LP    ++IKGD+ S+SIAA+S+IAKVTRD  M    + YP+Y 
Sbjct: 164 IEPSYLLLDAMKLPIGLP--QMSLIKGDTKSVSIAASSVIAKVTRDNYMEEIAQTYPEYR 221

Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           F  ++GY T +H   I++ G +  HR +F P++ 
Sbjct: 222 FQKNMGYGTKEHLHAIEQHGITKEHRRSFAPVKE 255


>gi|119946583|ref|YP_944263.1| ribonuclease H [Psychromonas ingrahamii 37]
 gi|189043643|sp|A1SYU9|RNH2_PSYIN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|119865187|gb|ABM04664.1| RNase HII [Psychromonas ingrahamii 37]
          Length = 204

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/184 (45%), Positives = 117/184 (63%), Gaps = 4/184 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV A +ILD NN   G+ DSKK+S KK   L+++I   A+ +++ 
Sbjct: 19  IAGVDEVGRGPLVGDVVTACVILDANNPISGLADSKKLSEKKLALLFDEIQEKALFVAVG 78

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            AS   ID  NI  AT+ A+  AV+NL + P    IDG   P+  +PC++  V+KGD+  
Sbjct: 79  RASPVEIDALNILHATMLAMQRAVDNLSISPEFVFIDGNRCPQLSMPCES--VVKGDARV 136

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASIIAKVTRDR M    K+YP YGF  H GYPT  H   I++ G +  +R +F+P
Sbjct: 137 AEISAASIIAKVTRDREMCELDKQYPHYGFAKHKGYPTKAHFAAIEKHGVTPEYRKSFKP 196

Query: 204 LRNL 207
           ++ +
Sbjct: 197 VKKV 200


>gi|260583825|ref|ZP_05851573.1| ribonuclease HII [Granulicatella elegans ATCC 700633]
 gi|260158451|gb|EEW93519.1| ribonuclease HII [Granulicatella elegans ATCC 700633]
          Length = 257

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 118/193 (61%), Gaps = 3/193 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E +  ++    +AG+DEVGRG LAGPVV AA+IL  N    G +DSKK+S  KREE+Y  
Sbjct: 64  EILAYQEGASFIAGVDEVGRGPLAGPVVAAAVILPKNIEDLGFDDSKKLSASKREEIYRL 123

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI I I       ID+ NI++A+  A+  AV  L++ P   LID   I  + P   
Sbjct: 124 IQEKAIAIGIGIVDADIIDQVNIYQASRLAMQQAVSELKIQPDYLLIDAMKIDVNTP--Q 181

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGD+ S+SIAAASI+AK  RD++M+   + YP Y F ++ GY T KH + +K KG 
Sbjct: 182 IGIIKGDAKSISIAAASIVAKQVRDQMMQEFDELYPGYDFSNNAGYGTPKHLEGLKSKGI 241

Query: 194 SCIHRLTFRPLRN 206
             IHR TF P+++
Sbjct: 242 CPIHRKTFAPIKD 254


>gi|21230816|ref|NP_636733.1| ribonuclease HII [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66769185|ref|YP_243947.1| ribonuclease HII [Xanthomonas campestris pv. campestris str. 8004]
 gi|39932426|sp|Q8PAW7|RNH2_XANCP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|81304856|sp|Q4USP6|RNH2_XANC8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|21112418|gb|AAM40657.1| ribonuclease HII [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66574517|gb|AAY49927.1| ribonuclease HII [Xanthomonas campestris pv. campestris str. 8004]
          Length = 240

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/183 (45%), Positives = 118/183 (64%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII-SI 83
           +AG+DE GRG LAGPV VAA++ DP      G++DSK++S ++RE+LY +I   A+  S+
Sbjct: 33  IAGVDEAGRGPLAGPVAVAAVVFDPAKPRINGLDDSKQLSAERREQLYARIVDRALAWSV 92

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
                + ID+ NI++AT+  +  AVE +  +   A IDG  +P+ LPC A A+I GD++ 
Sbjct: 93  VLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALD 152

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I AASI+AKVTRDRLMR  H ++P Y FD H GY T  H   ++  GP   HR +F P
Sbjct: 153 RAIMAASIVAKVTRDRLMRELHAQHPQYRFDLHKGYSTPAHLAALQTHGPCPQHRRSFAP 212

Query: 204 LRN 206
           +R 
Sbjct: 213 VRR 215


>gi|332527884|ref|ZP_08403921.1| ribonuclease HII [Rubrivivax benzoatilyticus JA2]
 gi|332112461|gb|EGJ12254.1| ribonuclease HII [Rubrivivax benzoatilyticus JA2]
          Length = 214

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/181 (46%), Positives = 117/181 (64%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DE G G LAGPVV AA+ILD      G+ DSK +S ++RE L+++I + A+ +SI+
Sbjct: 24  VAGVDEAGCGPLAGPVVAAAVILDDQAPIAGLADSKALSARQRERLFDEIHARALCVSIA 83

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID  NI  A L A+  AVE L+++P+  ++DG  +P  L   A AV+ GD+   
Sbjct: 84  LASVEEIDTLNILHARLLAMKRAVETLRLLPKRVMVDGNRLPV-LRFPAEAVVGGDAKVP 142

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKV RDRL    H ++PDYGFD H GYPT  H   ++  G    HR +F P+
Sbjct: 143 AISAASIVAKVHRDRLCAELHARWPDYGFDGHKGYPTRVHLDALRRLGACPEHRRSFAPV 202

Query: 205 R 205
           R
Sbjct: 203 R 203


>gi|168215356|ref|ZP_02640981.1| ribonuclease HII [Clostridium perfringens CPE str. F4969]
 gi|170713265|gb|EDT25447.1| ribonuclease HII [Clostridium perfringens CPE str. F4969]
          Length = 272

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/221 (43%), Positives = 126/221 (57%), Gaps = 21/221 (9%)

Query: 5   SIPERPHFELEAMVRE----KNMWP----------VAGIDEVGRGALAGPVVVAAIILDP 50
           S+  R    L  +++E    KNM+           VAG+DEVGRG LAGP+V AA+ILD 
Sbjct: 54  SLGNRLEKNLNNLIKEEERVKNMYLFDKSFGDYKYVAGVDEVGRGPLAGPIVSAAVILDS 113

Query: 51  ---NNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYH 106
              ++I   INDSKK+S  KREEL E I   A+  SIS    + ID+  I     D    
Sbjct: 114 SDLDDIILYINDSKKLSEHKREELSEIIKEKALSYSISMCDSKEIDEKGIGYCNNDVFIK 173

Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166
           A E L + P   L DG  I ++   +   VIKGD+ S  IA ASIIAKV RD +M+  HK
Sbjct: 174 ACEGLSIKPDLVLSDGYLI-KNFNGENKHVIKGDTKSACIACASIIAKVYRDNIMKKYHK 232

Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           KYP Y F+ +VGY T  H   +KE GP+ IHR++F  L+N+
Sbjct: 233 KYPQYDFEKNVGYGTKTHVDALKEVGPTEIHRMSF--LKNI 271


>gi|259417130|ref|ZP_05741049.1| ribonuclease HII [Silicibacter sp. TrichCH4B]
 gi|259346036|gb|EEW57850.1| ribonuclease HII [Silicibacter sp. TrichCH4B]
          Length = 208

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/198 (43%), Positives = 127/198 (64%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P   LE +   +    +AG+DEVGRG LAGPV  AA++LD   +P G+NDSKK++ ++R 
Sbjct: 7   PDLSLEQVALSRGYTRIAGVDEVGRGPLAGPVTAAAVVLDLAALPEGLNDSKKLTPRRRA 66

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L  +I + A  +++ AS + ID HNI +A+  A+  AV  L   P   LIDG  IP DL
Sbjct: 67  ALEPEIMARASYAVAHASVEEIDHHNILRASHLAMERAVAALDPQPDYLLIDGNLIPRDL 126

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              A AV+KGD  SLSIAAASI+AK  RDR+M    +++P YG++ + GYP+ +H++ + 
Sbjct: 127 RIPAEAVVKGDGRSLSIAAASILAKEARDRIMVDLAQQFPGYGWERNAGYPSKQHREALI 186

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + G +  HR +F+P+ N+
Sbjct: 187 KIGVTPHHRRSFKPVHNI 204


>gi|228986980|ref|ZP_04147106.1| Ribonuclease [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228772758|gb|EEM21198.1| Ribonuclease [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 257

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/194 (47%), Positives = 129/194 (66%), Gaps = 3/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KR+  Y++
Sbjct: 63  ENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRDRFYDE 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI I +   S Q ID+ NI++AT  A+  AV NL   P+  LID   +P  +P   
Sbjct: 123 IKVQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPTPIP--Q 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G 
Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEVHGI 240

Query: 194 SCIHRLTFRPLRNL 207
              HR +F P++++
Sbjct: 241 LEEHRKSFAPIKDM 254


>gi|332522627|ref|ZP_08398879.1| ribonuclease HII [Streptococcus porcinus str. Jelinkova 176]
 gi|332313891|gb|EGJ26876.1| ribonuclease HII [Streptococcus porcinus str. Jelinkova 176]
          Length = 258

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/204 (44%), Positives = 129/204 (63%), Gaps = 12/204 (5%)

Query: 14  LEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           LE M+R E++++      +AGIDEVGRG LAGPVV A +IL  N    G+NDSKKI   K
Sbjct: 55  LEYMLRYERDVYGQGYHYIAGIDEVGRGPLAGPVVAACVILPKNCKIKGLNDSKKIPKSK 114

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGR 123
              L+E+I + A+ I I    ++ ID  NI++AT  A+  A+ +L   +VIP   LID  
Sbjct: 115 HNILFEQIKNQAVGIGIGIVDNKMIDSVNIYQATKLAMLEAINDLKKVEVIPDYLLIDAM 174

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           ++  D+     ++IKGD+ SLSIAAASI+AKVTRD+LM    + YP Y F  + GY T K
Sbjct: 175 TL--DISIPQMSLIKGDANSLSIAAASIVAKVTRDQLMMSYDQNYPGYDFAQNAGYGTKK 232

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H   +K+ G + IHR +F P++++
Sbjct: 233 HLNGLKKYGVTPIHRKSFEPIKSM 256


>gi|301025937|ref|ZP_07189421.1| ribonuclease HII [Escherichia coli MS 69-1]
 gi|300395736|gb|EFJ79274.1| ribonuclease HII [Escherichia coli MS 69-1]
          Length = 198

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 112/182 (61%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP+    G+NDSKK+S K+R  L E+I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPSRPIAGLNDSKKLSEKRRLALCEEIKEKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  + AV+KGDS   
Sbjct: 72  RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSRVP 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|134094574|ref|YP_001099649.1| ribonuclease HII [Herminiimonas arsenicoxydans]
 gi|189043605|sp|A4G4T5|RNH2_HERAR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|133738477|emb|CAL61522.1| Ribonuclease HII (RNase HII) [Herminiimonas arsenicoxydans]
          Length = 211

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 114/183 (62%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + G+DE GRG LAGPV  AA+ILDP     G+ DSKK+S  +R+ L   I + A+  SI+
Sbjct: 20  ICGVDEAGRGPLAGPVFAAAVILDPMRPIDGLCDSKKLSEVRRDALAIDIKAHALSWSIA 79

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S Q ID  NI +AT+ A+  AVE L + P  ALIDG   P  +  +A A+IKGD    
Sbjct: 80  QCSEQEIDSLNILQATMLAMRRAVEGLHIQPTLALIDGNRCPV-MVVRAEAIIKGDDKVQ 138

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AK  RD  + + H  YP Y FD H GYPTA H + ++E G S +HR ++ P+
Sbjct: 139 AISAASILAKTARDHALGLLHIAYPHYAFDQHKGYPTALHLERLREHGVSPVHRKSYAPV 198

Query: 205 RNL 207
           R L
Sbjct: 199 RAL 201


>gi|237729489|ref|ZP_04559970.1| ribonuclease HII [Citrobacter sp. 30_2]
 gi|226909218|gb|EEH95136.1| ribonuclease HII [Citrobacter sp. 30_2]
          Length = 198

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/182 (46%), Positives = 111/182 (60%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L+++I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIIGLNDSKKLSEKRRLALFDEIKEKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI +AT+ A+  AV  L + P   LIDG   P  LP  + AV+KGDS   
Sbjct: 72  RAEPHEIDELNILQATMLAMQRAVAGLHIAPEYVLIDGNRCPA-LPVPSMAVVKGDSRVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H + +   G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMAALDTVFPQYGFAQHKGYPTAFHLEKLALHGATEHHRRSFGPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|169335925|ref|ZP_02863118.1| hypothetical protein ANASTE_02360 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258663|gb|EDS72629.1| hypothetical protein ANASTE_02360 [Anaerofustis stercorihominis DSM
           17244]
          Length = 379

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/177 (49%), Positives = 112/177 (63%), Gaps = 3/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AGIDEVGRG LAGPVV AA++L   +    INDSKK+S +KREEL EKI   AI  +I 
Sbjct: 78  IAGIDEVGRGPLAGPVVTAAVMLPKESNILYINDSKKLSSQKREELAEKIKEEAISYAIG 137

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
              +  IDK NI  AT +A+  AV+NL++ P   LID   +  D+  ++F  +KGD    
Sbjct: 138 IKDNGIIDKINILNATKEAMLEAVDNLKIKPEILLIDAVHLNTDIKQESF--VKGDENIY 195

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SI AASI+AKV RD+LM    K YP+YGF+ + GY T  H + IK  G   IHR +F
Sbjct: 196 SIGAASILAKVYRDKLMEDYAKDYPEYGFEKNKGYGTFDHIEAIKNNGLCPIHRSSF 252


>gi|154503287|ref|ZP_02040347.1| hypothetical protein RUMGNA_01111 [Ruminococcus gnavus ATCC 29149]
 gi|153795954|gb|EDN78374.1| hypothetical protein RUMGNA_01111 [Ruminococcus gnavus ATCC 29149]
          Length = 250

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/177 (49%), Positives = 115/177 (64%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG LAGPVV AA+IL  +     +NDSKK+S K+REELY++I   AI I I 
Sbjct: 70  ICGIDEVGRGPLAGPVVAAAVILPKDAEILYLNDSKKLSAKRREELYDEIQEKAIAIGIG 129

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI +AT +A+  A+  L V P   L D  +IPE +  Q   +IKGD+ S+
Sbjct: 130 MAGPARIDEINILQATYEAMRQAIGQLSVEPEVLLNDAVTIPEVVIPQ-VPIIKGDAKSV 188

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SIAAAS+IAKVTRDRLM    +    YGF  + GY +A+H   +++ GP+ IHR TF
Sbjct: 189 SIAAASVIAKVTRDRLMEEYDQVLAGYGFADNKGYGSAEHIAALRKLGPTPIHRRTF 245


>gi|168216993|ref|ZP_02642618.1| ribonuclease HII [Clostridium perfringens NCTC 8239]
 gi|182380928|gb|EDT78407.1| ribonuclease HII [Clostridium perfringens NCTC 8239]
          Length = 272

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/221 (43%), Positives = 126/221 (57%), Gaps = 21/221 (9%)

Query: 5   SIPERPHFELEAMVRE----KNMWP----------VAGIDEVGRGALAGPVVVAAIILDP 50
           S+  R    L  +++E    KNM+           VAG+DEVGRG LAGP+V AA+ILD 
Sbjct: 54  SLGNRLEKNLNNLIKEEERVKNMYLFDKSFGDYKYVAGVDEVGRGPLAGPIVSAAVILDS 113

Query: 51  ---NNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYH 106
              ++I   INDSKK+S  KREEL E I   A+  SIS    + ID+  I     D    
Sbjct: 114 SDLDDIILYINDSKKLSEHKREELSEIIKEKALSYSISMCDSKEIDEKGIGYCNNDVFIK 173

Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166
           A E L + P   L DG  I ++   +   VIKGD+ S  IA ASIIAKV RD +M+  HK
Sbjct: 174 ACEGLSIKPDLVLSDGYLI-KNFNGENKHVIKGDTKSACIACASIIAKVYRDNIMKEYHK 232

Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           KYP Y F+ +VGY T  H   +KE GP+ IHR++F  L+N+
Sbjct: 233 KYPQYDFEKNVGYGTKTHVDALKEVGPTEIHRMSF--LKNI 271


>gi|289670236|ref|ZP_06491311.1| ribonuclease HII [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 242

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/182 (45%), Positives = 119/182 (65%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII-SI 83
           VAG+DE GRG LAGPV VAA++ DP+     G++DSK+++ ++RE+LY +I   A+  S+
Sbjct: 33  VAGVDEAGRGPLAGPVAVAAVVFDPSKPRINGLDDSKQLTAERREQLYARIVDRALAWSV 92

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
                + ID+ NI++AT+  +  AVE +  +   A IDG  +P+ LPC A A+I GD++ 
Sbjct: 93  VLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALD 152

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I AASI+AKVTRDRLM   H ++P+Y FD H GY T  H   +K  GP   HR +F P
Sbjct: 153 RAIMAASIVAKVTRDRLMHELHTQHPEYRFDQHKGYSTPVHLAALKTHGPCPQHRRSFAP 212

Query: 204 LR 205
           +R
Sbjct: 213 VR 214


>gi|163782691|ref|ZP_02177688.1| 5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882264|gb|EDP75771.1| 5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 190

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/188 (45%), Positives = 118/188 (62%), Gaps = 8/188 (4%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           E+  W     VAG+DE GRG LAGPVV +A+IL P   PF   DSKK+S K+REELYE I
Sbjct: 5   EEKFWREGLLVAGVDEAGRGPLAGPVVASAVILPPFTEPFLKGDSKKLSRKEREELYELI 64

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
             +A+ +  +      ID+ NI++AT  A+  A+++L+  P   +I      E+  C   
Sbjct: 65  KETALAVGTAVVDSAVIDRINIYQATKLAMKRALDDLK-HPFDVVISDYVKLEEFNC--L 121

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            ++KGD  SLS A AS++AKV RDR+M   H+ YP+Y F  H GYPT KH+++IK+ G +
Sbjct: 122 PLVKGDERSLSCACASVVAKVLRDRIMERFHEVYPEYEFVKHKGYPTKKHRELIKKFGIT 181

Query: 195 CIHRLTFR 202
            IHR +FR
Sbjct: 182 EIHRRSFR 189


>gi|187251038|ref|YP_001875520.1| ribonuclease H [Elusimicrobium minutum Pei191]
 gi|186971198|gb|ACC98183.1| Ribonuclease H [Elusimicrobium minutum Pei191]
          Length = 210

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/208 (44%), Positives = 121/208 (58%), Gaps = 8/208 (3%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF---GINDSKK 62
           + E   F+ E +  +KN   + GIDE GRG LAGPVV  A+   P  I      +NDSKK
Sbjct: 1   MNELQRFDCEIL--QKNSCALIGIDEAGRGPLAGPVVACAVCA-PKEIYHLFEDVNDSKK 57

Query: 63  ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-ALI 120
           ++  KRE++Y +I    I   +  AS + ID+ NI +AT  A+  A +    I  + AL+
Sbjct: 58  LTDVKREKIYARINGYKIAYGVGFASAKEIDEINILQATFLAMRRACQKFLDINEALALV 117

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG    +D       VI GD+ S SIA AS+IAKV RDR MR AH+ YP YGFD H GY 
Sbjct: 118 DGNHKIKDFLLPQQTVIDGDAKSFSIAMASVIAKVHRDRYMRKAHELYPVYGFDGHKGYG 177

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNLS 208
           + KH   IKE GP   HR+TF PL+NL+
Sbjct: 178 SGKHIAAIKEHGPCKEHRMTFAPLKNLN 205


>gi|228935151|ref|ZP_04097978.1| Ribonuclease [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228824516|gb|EEM70321.1| Ribonuclease [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 257

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/194 (47%), Positives = 127/194 (65%), Gaps = 3/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +REK +  +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S  KRE  Y++
Sbjct: 63  ENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYDE 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI I +   S Q ID+ NI++AT  A+  AV NL       LID   +P  +P   
Sbjct: 123 IKEKAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTTEYLLIDAMKLPTPIP--Q 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G 
Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHGV 240

Query: 194 SCIHRLTFRPLRNL 207
              HR +F P++++
Sbjct: 241 LEEHRKSFAPIKDM 254


>gi|157964267|ref|YP_001499091.1| ribonuclease HII [Rickettsia massiliae MTU5]
 gi|189043648|sp|A8F0V8|RNH2_RICM5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157844043|gb|ABV84544.1| Ribonuclease HII [Rickettsia massiliae MTU5]
          Length = 194

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/177 (49%), Positives = 113/177 (63%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           VAGIDE GRG LAGPVV +A+I+D  NI  GI DSKK+S K RE LYE+ITS+ + + + 
Sbjct: 18  VAGIDEAGRGPLAGPVVASAVIIDNANIITGIKDSKKLSKKTRELLYEQITSNYVWATAI 77

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            SH  ID  NI +AT  A   AV NL + P   L+DG    +D   +  ++I GD++SLS
Sbjct: 78  ISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKDE--RFVSIINGDNLSLS 135

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           IAAASI+AKVTRDRLM     + P Y +  + GY T +H + I   G S  HR +FR
Sbjct: 136 IAAASIVAKVTRDRLMLDLSAELPQYLWHKNSGYGTKEHIEAINIHGLSPYHRRSFR 192


>gi|269798033|ref|YP_003311933.1| ribonuclease HII/HIII [Veillonella parvula DSM 2008]
 gi|269094662|gb|ACZ24653.1| ribonuclease HII/HIII [Veillonella parvula DSM 2008]
          Length = 265

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/197 (43%), Positives = 130/197 (65%), Gaps = 2/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           ++ E M  ++ ++ VAG+DEVGRG +AGPV VAA+IL P  +  G+NDSKK++ +KRE L
Sbjct: 63  YDYEGMFYDQGIYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREAL 122

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I   A+ +S  S   + ID+ NI++ T  A+Y A+  L V   + + D   +P DL 
Sbjct: 123 YDIIMDEAVAVSCISYGPEKIDELNIYEVTRQAMYEAIRTLSVPAEAVVADAMKLP-DLT 181

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGDS S +IAAASIIAKVTRDR M+    ++P YGF  H GY T  H++ I++
Sbjct: 182 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDDEFPGYGFGIHKGYYTELHKEAIEQ 241

Query: 191 KGPSCIHRLTFRPLRNL 207
           +G + +HR +F P++++
Sbjct: 242 QGVTPLHRKSFEPIKSI 258


>gi|293408275|ref|ZP_06652115.1| ribonuclease HII [Escherichia coli B354]
 gi|331671689|ref|ZP_08372487.1| ribonuclease HII [Escherichia coli TA280]
 gi|291472526|gb|EFF15008.1| ribonuclease HII [Escherichia coli B354]
 gi|331071534|gb|EGI42891.1| ribonuclease HII [Escherichia coli TA280]
          Length = 198

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 112/182 (61%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP+    G+NDSKK+S K+R  L E+I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPSRPIAGLNDSKKLSEKRRLALCEEIKEKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  + AV+KGDS   
Sbjct: 72  RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSRVP 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|323964924|gb|EGB60390.1| ribonuclease HII [Escherichia coli M863]
 gi|327255162|gb|EGE66765.1| ribonuclease HII family protein [Escherichia coli STEC_7v]
          Length = 198

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 111/182 (60%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L E+I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPTRPIAGLNDSKKLSEKRRLALCEEIKEKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  + AV+KGDS   
Sbjct: 72  RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSRVP 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|289550965|ref|YP_003471869.1| Ribonuclease HII [Staphylococcus lugdunensis HKU09-01]
 gi|289180497|gb|ADC87742.1| Ribonuclease HII [Staphylococcus lugdunensis HKU09-01]
          Length = 255

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/185 (47%), Positives = 118/185 (63%), Gaps = 7/185 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA---IIS 82
           + GIDEVGRG LAGPVV  A+IL+ N+   G+NDSKK+S   R +L + + ++       
Sbjct: 74  ICGIDEVGRGPLAGPVVACAVILNANHHYLGLNDSKKVSAVNRAQLNQDLMANVRGYAYG 133

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+SA+   ID+ NI++AT  A+  A+  LQV P   LID  SI  D      A+IKGD+ 
Sbjct: 134 IASAAE--IDQLNIYRATQVAMQRAINQLQVRPTHLLIDAMSI--DSTISQTAIIKGDAK 189

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           S+SIAAASI+AK  RD LMR   + YP YGFD +VGY T  H   +K+ G + IHR TF 
Sbjct: 190 SVSIAAASIMAKEYRDHLMRDYAQVYPYYGFDKNVGYGTKAHLAGLKQYGVTPIHRRTFE 249

Query: 203 PLRNL 207
           P++++
Sbjct: 250 PVKSM 254


>gi|225019936|ref|ZP_03709128.1| hypothetical protein CLOSTMETH_03890 [Clostridium methylpentosum
           DSM 5476]
 gi|224947300|gb|EEG28509.1| hypothetical protein CLOSTMETH_03890 [Clostridium methylpentosum
           DSM 5476]
          Length = 324

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/184 (47%), Positives = 114/184 (61%), Gaps = 2/184 (1%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78
           RE     + G+DE GRG LAGPV  AA IL  +    GINDSKK++ KKRE LYE+I   
Sbjct: 8   REAGAEVLCGVDEAGRGPLAGPVYAAACILPLDAEIEGINDSKKLTEKKREALYEQIRER 67

Query: 79  AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137
           A+   +++AS + ID  NI +AT  A+  AVE L++ P   LIDG   P D+   +  VI
Sbjct: 68  ALDYCVATASVEEIDSINILQATFLAMRRAVEGLRLRPGLVLIDGNKNP-DVGVHSRCVI 126

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGD+ S +IAAASI+AKV RDR M+    +YP+Y F  H GY T  H + + E G S +H
Sbjct: 127 KGDATSANIAAASILAKVERDRCMQALDAEYPEYCFAKHKGYGTKLHTEKLLEYGISPVH 186

Query: 198 RLTF 201
           R +F
Sbjct: 187 RRSF 190


>gi|163856833|ref|YP_001631131.1| ribonuclease HII [Bordetella petrii DSM 12804]
 gi|163260561|emb|CAP42863.1| rnhB [Bordetella petrii]
          Length = 187

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 83/182 (45%), Positives = 112/182 (61%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DE GRG LAG V  AA+ILDP     G+ DSK ++ ++REEL   I   A+   ++
Sbjct: 1   MAGVDEAGRGPLAGGVYAAAVILDPGRPVDGLADSKVLTAERREELAAHIQERALAWCVA 60

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SA+   ID  NI +ATL A+  AV+ L   P+ A++DG   P  L C    VIKGD++  
Sbjct: 61  SATVLEIDTLNILRATLLAMQRAVDGLGQAPQVAMVDGNQAPT-LRCTVQTVIKGDALVP 119

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AK  RD  ++  H  YP YGFD H GY TA H Q ++E GP   HR +F P+
Sbjct: 120 AISAASILAKTARDADLQRLHALYPQYGFDQHKGYGTALHMQRLREHGPCPEHRRSFAPV 179

Query: 205 RN 206
           R 
Sbjct: 180 RE 181


>gi|319943812|ref|ZP_08018093.1| ribonuclease HII [Lautropia mirabilis ATCC 51599]
 gi|319743045|gb|EFV95451.1| ribonuclease HII [Lautropia mirabilis ATCC 51599]
          Length = 199

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 82/180 (45%), Positives = 114/180 (63%), Gaps = 1/180 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DE GRG LAGPVV AA+IL P++   G+ DSKK+S ++RE L  +I   A+  +++
Sbjct: 13  IAGVDEAGRGPLAGPVVAAAVILSPDHPIEGLRDSKKLSARRRETLANEIREKALAFAVA 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS + ID+ NI  ATL A+  A++ LQ  P    IDG   P+    +   VI GD    
Sbjct: 73  SASVEEIDRLNILHATLLAMTRAIQGLQPQPLHVRIDGNRAPKLEGLRVETVIGGDDQDP 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AK  RD LM    +++P YGF+ H+GY TA H   ++E GP  IHR +F P+
Sbjct: 133 AIAAASILAKTVRDHLMLQYAEQFPAYGFERHMGYGTAVHMAALREHGPCEIHRRSFAPV 192


>gi|152976203|ref|YP_001375720.1| ribonuclease HII [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|189043565|sp|A7GRG7|RNH2_BACCN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|152024955|gb|ABS22725.1| Ribonuclease H [Bacillus cytotoxicus NVH 391-98]
          Length = 259

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/194 (47%), Positives = 127/194 (65%), Gaps = 3/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +R++ +  +AGIDEVGRG LAGPVV AA+IL       G+NDSKK+S  KRE  Y++
Sbjct: 63  ENALRKQGISYIAGIDEVGRGPLAGPVVTAAVILPEEFYIPGLNDSKKLSEAKRELFYDE 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI I +   S Q ID+ NI++AT  A+  AV NL   P   LID   +P  +P  +
Sbjct: 123 IREKAIAIGVGIVSPQVIDEMNIYQATKRAMLDAVANLSYAPEHLLIDAMKLPTSIPQTS 182

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             ++KGD+ S+SI+AASIIAKVTRDR+M+   K YP+YGF+ H+GY T +H + I+  G 
Sbjct: 183 --IVKGDAKSISISAASIIAKVTRDRMMKELGKTYPEYGFEKHMGYGTKQHLEAIETYGV 240

Query: 194 SCIHRLTFRPLRNL 207
              HR TF P++++
Sbjct: 241 LEEHRKTFAPIKDM 254


>gi|322373051|ref|ZP_08047587.1| ribonuclease HII [Streptococcus sp. C150]
 gi|321278093|gb|EFX55162.1| ribonuclease HII [Streptococcus sp. C150]
          Length = 260

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 88/201 (43%), Positives = 125/201 (62%), Gaps = 9/201 (4%)

Query: 14  LEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           LE M+  EK+++      +AG+DEVGRG LAGPVV AA+IL       G+NDSKKI   K
Sbjct: 59  LEMMLSYEKSLYAQGVELIAGVDEVGRGPLAGPVVAAAVILPKLCKIKGLNDSKKIPKSK 118

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
            E +Y+++   A+ + I    +  ID  NI++AT  A+  A+E L   P   LID  S+ 
Sbjct: 119 HEAIYKQVMKEAVAVGIGIKDNHVIDDVNIYEATKLAMAEAIEKLSPKPEHLLIDAMSL- 177

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            DLP    ++IKGD+ SLSIAAASI+AKVTRD++M    +++P Y FD + GY T  H  
Sbjct: 178 -DLPIGQTSIIKGDANSLSIAAASIVAKVTRDKMMADYDQEFPGYAFDQNAGYGTKNHLS 236

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G + IHR +F P++++
Sbjct: 237 GIDKFGVTPIHRRSFEPIKSI 257


>gi|213610034|ref|ZP_03369860.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 184

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/179 (46%), Positives = 109/179 (60%), Gaps = 2/179 (1%)

Query: 29  IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSAS 87
           +DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  LY++I   A+  S+  A 
Sbjct: 1   MDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLSLYDEIKEKALSWSLGRAE 60

Query: 88  HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147
              ID+ NI  AT+ A+  AV  L + P   LIDG   PE LP  + AV+KGDS    I+
Sbjct: 61  AHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPE-LPVPSMAVVKGDSRVAEIS 119

Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           AASI+AKVTRD  M      +P YGF  H GYPTA H + + + G +  HR +F P++ 
Sbjct: 120 AASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAQYGATAHHRRSFAPVKR 178


>gi|325680872|ref|ZP_08160410.1| ribonuclease HII [Ruminococcus albus 8]
 gi|324107652|gb|EGC01930.1| ribonuclease HII [Ruminococcus albus 8]
          Length = 204

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/177 (49%), Positives = 115/177 (64%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           V G DE GRG LAG V  AA++ D + +  GINDSKK++ KKREEL+E I   A+  SI 
Sbjct: 17  VCGCDEAGRGPLAGDVFAAAVVFDKDTVIEGINDSKKLTAKKREELFEVIVEKALDFSIQ 76

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A+ + I+K NI    + A+  AVE++++ P   LIDG   PE L C A AV+KGD+ S 
Sbjct: 77  CATVEEIEKFNILNCAMLAMKRAVESMKIKPDVCLIDGNKTPE-LECDAIAVVKGDAQSQ 135

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +IAAASI+AKV RDR M    KK+P++ F+ H GY T  H Q+I + G S IHR +F
Sbjct: 136 AIAAASILAKVARDRYMLEMAKKFPEWQFEKHKGYGTKLHYQMIDKYGESPIHRPSF 192


>gi|319786395|ref|YP_004145870.1| ribonuclease H [Pseudoxanthomonas suwonensis 11-1]
 gi|317464907|gb|ADV26639.1| Ribonuclease H [Pseudoxanthomonas suwonensis 11-1]
          Length = 233

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/188 (44%), Positives = 115/188 (61%), Gaps = 1/188 (0%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
           ++    VAG+DE GRG LAGPV VAA++LDP     G++DSKK+SH +RE+LY +I   A
Sbjct: 25  DRKQLRVAGVDEAGRGPLAGPVAVAAVVLDPRRRIRGLDDSKKLSHAQREDLYPRIVERA 84

Query: 80  II-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           +   +       ID+ NI +ATL+ +   V  L    + A IDG  +P  LPC A A+I 
Sbjct: 85  LAWHVELVPVDEIDRLNILQATLEGMRRCVLALGEHAQLARIDGNMLPRSLPCMAEAIIG 144

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD++  +I AASI+AKV+RDRLM   H+++P YGF  H GY T  H   +   GP   HR
Sbjct: 145 GDALEPAIMAASILAKVSRDRLMCQLHEEFPVYGFAEHKGYATPAHLAALASHGPCVHHR 204

Query: 199 LTFRPLRN 206
            +F P+R 
Sbjct: 205 RSFAPVRQ 212


>gi|293394717|ref|ZP_06639009.1| ribonuclease HII [Serratia odorifera DSM 4582]
 gi|291422843|gb|EFE96080.1| ribonuclease HII [Serratia odorifera DSM 4582]
          Length = 202

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 111/182 (60%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++I   A   S+ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPARPIVGLADSKKLSEKRRLALYDEIIDKAQAWSLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID  NI  AT+ A+  AV  L + P   LIDG   P+ LP ++ AV+KGDS   
Sbjct: 73  RAEPAEIDSLNILHATMLAMQRAVAGLAITPDLVLIDGNRCPK-LPMRSQAVVKGDSRVA 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M      +P YGF  H GYPTA H + + + G +  HR +F P+
Sbjct: 132 EISAASILAKVTRDREMAELDLSFPAYGFAQHKGYPTAFHLEKLAQYGATQHHRRSFAPV 191

Query: 205 RN 206
           R 
Sbjct: 192 RR 193


>gi|152995315|ref|YP_001340150.1| ribonuclease H [Marinomonas sp. MWYL1]
 gi|189043694|sp|A6VUT6|RNH2_MARMS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|150836239|gb|ABR70215.1| Ribonuclease H [Marinomonas sp. MWYL1]
          Length = 199

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 88/183 (48%), Positives = 121/183 (66%), Gaps = 1/183 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG DE GRG LAG VV AA+ILDP     G+ DSKK+S KKRE L+ +I   A+   I+
Sbjct: 14  LAGTDEAGRGPLAGEVVAAAVILDPAQPITGLADSKKLSEKKREALFVEIQEKALAYGIA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A+ + ID+ NI  A++ A+  AV  L + P   L+DG  IP +LPC A AV+KGD+   
Sbjct: 74  RATIEEIDELNILHASMLAMSRAVALLSIEPEYVLVDGNRIPPNLPCSAEAVVKGDARHA 133

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKVTRDR +    + YP+YGF+ H GYPTA H + I+  G + IHR +F P+
Sbjct: 134 AISAASILAKVTRDRDIVQVAQIYPEYGFEKHKGYPTALHLEAIRLHGITPIHRRSFGPV 193

Query: 205 RNL 207
           + +
Sbjct: 194 KKI 196


>gi|238923885|ref|YP_002937401.1| ribonuclease H [Eubacterium rectale ATCC 33656]
 gi|238875560|gb|ACR75267.1| ribonuclease H [Eubacterium rectale ATCC 33656]
          Length = 253

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/177 (48%), Positives = 115/177 (64%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG LAGPVV  A+IL  +     INDSKK++  KR+ELY+ I   A+ + I 
Sbjct: 73  ICGIDEVGRGPLAGPVVACAVILPKDCDILYINDSKKLTAAKRDELYDVIMEKAVSVGIG 132

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            ASH+ ID+ NI +AT +A+  A+  L   P   L D  +IP  +  +   +IKGD+ S+
Sbjct: 133 MASHERIDEINILQATYEAMRQAIGKLDPAPDLTLNDAVTIP-GVDIKQVPIIKGDAKSI 191

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SI AASI+AKVTRDR+M      YP YGF S+ GY +A+H + +K+ GPS IHR +F
Sbjct: 192 SIGAASIVAKVTRDRMMVEYDNIYPGYGFASNKGYGSAEHIKALKKIGPSPIHRASF 248


>gi|91975688|ref|YP_568347.1| ribonuclease HII [Rhodopseudomonas palustris BisB5]
 gi|122969169|sp|Q13BU3|RNH2_RHOPS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|91682144|gb|ABE38446.1| RNase HII [Rhodopseudomonas palustris BisB5]
          Length = 298

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/196 (44%), Positives = 130/196 (66%), Gaps = 1/196 (0%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +P F  E  + ++ +WPVAG DE GRG LAGPVV AA++LDP  +P G++DSK+++  +R
Sbjct: 70  QPSFRRERALIKRGVWPVAGCDEAGRGPLAGPVVAAAVVLDPKRVPKGLDDSKRLTADRR 129

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           EEL+E+I ++A ++++ AS + I++ NI +A+L A+  AV  L  +P+   +DGR     
Sbjct: 130 EELFEEICATAQVAVAYASPERINRDNILRASLWALTRAVHALPDLPQHVFVDGRDRLAT 189

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
             C++ AV+ GD +  SIAAASIIAKV+RDRLM    ++ P YGF+SH GY   +H   +
Sbjct: 190 R-CESEAVVGGDGLIASIAAASIIAKVSRDRLMCRLAQECPGYGFESHKGYGVPEHLAAL 248

Query: 189 KEKGPSCIHRLTFRPL 204
              GP+  HR  F P+
Sbjct: 249 ARLGPTVHHRRFFAPV 264


>gi|118594900|ref|ZP_01552247.1| ribonuclease HII [Methylophilales bacterium HTCC2181]
 gi|118440678|gb|EAV47305.1| ribonuclease HII [Methylophilales bacterium HTCC2181]
          Length = 188

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 84/188 (44%), Positives = 118/188 (62%), Gaps = 1/188 (0%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81
           M  + G+DE GRG LAGPV  AA+ILDP+    G+ DSKK+S K+   +Y  I   A  +
Sbjct: 1   MIMICGVDEAGRGPLAGPVFAAAVILDPSRPIPGLKDSKKLSPKQLLSVYLDIMKCAWEV 60

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           S ++A+ Q ID+ NI +A+L A+  A+  L  IP   LIDG+  P+    +  AV+KGD+
Sbjct: 61  SSATATPQEIDQINILQASLLAMKRAIYQLSNIPDRILIDGQHCPDIQSMEMKAVVKGDA 120

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
               I+AASIIAKV RD+ M     ++P+Y F  H GYPT +H ++I+E G S +HR TF
Sbjct: 121 KHQEISAASIIAKVERDKYMLELDHQFPEYNFKQHKGYPTKEHIRLIREFGVSPVHRKTF 180

Query: 202 RPLRNLSV 209
           RP+  L +
Sbjct: 181 RPVSELLI 188


>gi|134299893|ref|YP_001113389.1| ribonuclease HII [Desulfotomaculum reducens MI-1]
 gi|189043592|sp|A4J661|RNH2_DESRM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|134052593|gb|ABO50564.1| Ribonuclease H [Desulfotomaculum reducens MI-1]
          Length = 198

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 119/184 (64%), Gaps = 4/184 (2%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSA 86
           G+DE GRG+    +  +A ILDP +   G+ DSKK+S +KRE L E+I   A+   I+ A
Sbjct: 6   GVDETGRGSCISGIYASACILDPAHPIEGLRDSKKLSARKREILAEEIKQYALSWCIAQA 65

Query: 87  SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSISLS 145
           S + +++ N+H ATL A+  A+E L +      +DG  +PE D+P +A  ++KGD +  +
Sbjct: 66  SLEEVEQLNVHHATLLAMKRAIEGLSIRANKVYVDGIHLPEVDIPAEA--IVKGDDLIPA 123

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AKV RD  M   H+KYP YGF+SH GY T  H++ +K+ GPS IHR T+ P+R
Sbjct: 124 ISAASILAKVARDGAMLEYHEKYPQYGFNSHKGYLTKAHREALKKYGPSPIHRKTYAPIR 183

Query: 206 NLSV 209
            L V
Sbjct: 184 ELLV 187


>gi|46201021|ref|ZP_00055903.2| COG0164: Ribonuclease HII [Magnetospirillum magnetotacticum MS-1]
          Length = 201

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 113/183 (61%), Gaps = 5/183 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYEKITSSAII 81
           V GIDEVGRG LAGPVV AA+ILD   +P  +    +DSKK+S + REEL E + ++A I
Sbjct: 14  VCGIDEVGRGPLAGPVVAAAVILDAARLPKALLDRLDDSKKLSKRNREELAELVPATATI 73

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
               AS   ID+ NI +AT  A+  A + L      AL+DG   P  LPC    V+ GD 
Sbjct: 74  GFGEASVDEIDRLNILQATFLAMRRAYDALGRECGHALVDGNRPPR-LPCPIRCVVGGDG 132

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           ISLSIAAAS++AKV RD LM      +P++G++ + GY TA+H   +K  GP+  HR +F
Sbjct: 133 ISLSIAAASVVAKVRRDGLMAELALAHPEFGWERNAGYGTAEHLDALKRLGPTPHHRRSF 192

Query: 202 RPL 204
            P+
Sbjct: 193 APV 195


>gi|260889965|ref|ZP_05901228.1| ribonuclease HII [Leptotrichia hofstadii F0254]
 gi|260860571|gb|EEX75071.1| ribonuclease HII [Leptotrichia hofstadii F0254]
          Length = 198

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 85/187 (45%), Positives = 116/187 (62%), Gaps = 7/187 (3%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSS 78
           EK    V G+DE GRG LAGPVV  A+I+  +      INDSKK++ KKRE L+E I  +
Sbjct: 5   EKYNKIVVGVDEAGRGPLAGPVVAGAVIVIQDFPELQEINDSKKLTEKKRERLFEAIEKN 64

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA----LIDGRSIPEDLPCQAF 134
            I+ I  AS + ID+ NI  AT  A+  A+   QV  +SA    L+DG  +  +   +  
Sbjct: 65  CIVGIGIASEKEIDEMNILNATFLAMRRAIN--QVAEKSAFDIVLVDGNHLIREYEGEQE 122

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            ++KGDS SL+IA ASI+AKVTRDR++    K++P+Y F+ H GY T KH+Q++ EKG  
Sbjct: 123 CIVKGDSKSLAIATASIVAKVTRDRILCEIAKEFPEYEFEKHKGYGTKKHRQILLEKGAC 182

Query: 195 CIHRLTF 201
             HR TF
Sbjct: 183 KYHRKTF 189


>gi|120610517|ref|YP_970195.1| ribonuclease HII [Acidovorax citrulli AAC00-1]
 gi|189043527|sp|A1TN83|RNH2_ACIAC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|120588981|gb|ABM32421.1| RNase HII [Acidovorax citrulli AAC00-1]
          Length = 240

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 81/181 (44%), Positives = 118/181 (65%), Gaps = 4/181 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DE GRG LAGPVV AA+ILD      G+ DSK ++  +RE L+++I + A+  S++
Sbjct: 23  VAGVDEAGRGPLAGPVVAAAVILDELQPIEGLADSKTLTAARREALFDEIRAKALCCSVA 82

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            A+ + ID  NI +AT+ A+  AV  L++ P   L+DG  +P  D+P +A  ++KGD++ 
Sbjct: 83  EATVEEIDTLNILQATMLAMRRAVAGLRLKPVRVLVDGNRLPPLDVPAEA--IVKGDALV 140

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AKVTRDR     H+ YP YGF SH GY TA+H   ++  G    HR +F P
Sbjct: 141 QAISAASILAKVTRDRWCAQLHEAYPHYGFASHKGYGTAEHMAALQAHGACPEHRRSFAP 200

Query: 204 L 204
           +
Sbjct: 201 V 201


>gi|313884900|ref|ZP_07818652.1| ribonuclease HII [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619591|gb|EFR31028.1| ribonuclease HII [Eremococcus coleocola ACS-139-V-Col8]
          Length = 279

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 89/199 (44%), Positives = 123/199 (61%), Gaps = 10/199 (5%)

Query: 17  MVREKNMWP------VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKRE 69
           +V E ++W       +AGIDEVGRG LAGPVV AA+IL  +   F GINDSK++SH++R 
Sbjct: 76  LVYENDLWQNQSFKYIAGIDEVGRGPLAGPVVTAAVILPQDCAAFIGINDSKQLSHQQRV 135

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
              E I  +A+  SI+  S Q ID+ NI++AT   +  AV NL + P   L+D   I   
Sbjct: 136 SYAEIIKENALAYSIAIGSAQLIDQVNIYQATRQMMVKAVANLAIQPDYLLLDAMQIESS 195

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           +P ++  +IKGD  SLSIAAASIIAKV RD++M     ++P Y F  + GY T  H   +
Sbjct: 196 IPQRS--IIKGDQKSLSIAAASIIAKVYRDQIMDQYALEFPYYDFQHNKGYGTQNHLAGL 253

Query: 189 KEKGPSCIHRLTFRPLRNL 207
            E G S IHR +F P++++
Sbjct: 254 NEFGYSPIHRRSFEPVKSM 272


>gi|255657930|ref|ZP_05403339.1| ribonuclease HII [Mitsuokella multacida DSM 20544]
 gi|260850123|gb|EEX70130.1| ribonuclease HII [Mitsuokella multacida DSM 20544]
          Length = 259

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 94/186 (50%), Positives = 132/186 (70%), Gaps = 6/186 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83
           VAG+DE GRG LAGPV VAA+IL P+++    +NDSKK+S K REEL+++I   AI +  
Sbjct: 72  VAGVDEAGRGPLAGPVSVAAVIL-PHDLCLPKLNDSKKLSAKVREELFDEIQEKAIAVGT 130

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED-LPCQAFAVIKGDSI 142
           +    Q ID+ NI++AT++ +Y A+ +LQ  P+  LID  ++P D LP  + ++IKGD+ 
Sbjct: 131 ALIDAQTIDRVNIYQATINGMYEAIFSLQPAPQEVLID--AVPLDRLPMPSESIIKGDAK 188

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           S SI+AASIIAKVTRDRLM    K YP+YGF  H GY TA+H + +K+ GP  IHR +F 
Sbjct: 189 SASISAASIIAKVTRDRLMDEYDKIYPEYGFAQHKGYGTAQHIEALKKYGPCPIHRRSFE 248

Query: 203 PLRNLS 208
           P+R+++
Sbjct: 249 PVRSIA 254


>gi|110640402|ref|YP_668130.1| ribonuclease HII [Escherichia coli 536]
 gi|170680885|ref|YP_001742311.1| ribonuclease HII [Escherichia coli SMS-3-5]
 gi|191172810|ref|ZP_03034347.1| ribonuclease HII [Escherichia coli F11]
 gi|215485344|ref|YP_002327775.1| ribonuclease HII [Escherichia coli O127:H6 str. E2348/69]
 gi|218688058|ref|YP_002396270.1| ribonuclease HII [Escherichia coli ED1a]
 gi|218703437|ref|YP_002410956.1| ribonuclease HII [Escherichia coli UMN026]
 gi|293403252|ref|ZP_06647349.1| rnhB [Escherichia coli FVEC1412]
 gi|298378788|ref|ZP_06988672.1| ribonuclease HII [Escherichia coli FVEC1302]
 gi|300900779|ref|ZP_07118923.1| ribonuclease HII [Escherichia coli MS 198-1]
 gi|300938590|ref|ZP_07153323.1| ribonuclease HII [Escherichia coli MS 21-1]
 gi|300984943|ref|ZP_07177208.1| ribonuclease HII [Escherichia coli MS 200-1]
 gi|306815218|ref|ZP_07449367.1| ribonuclease HII [Escherichia coli NC101]
 gi|312966320|ref|ZP_07780546.1| ribonuclease HII family protein [Escherichia coli 2362-75]
 gi|331645326|ref|ZP_08346437.1| ribonuclease HII [Escherichia coli M605]
 gi|331661254|ref|ZP_08362186.1| ribonuclease HII [Escherichia coli TA206]
 gi|331681568|ref|ZP_08382205.1| ribonuclease HII [Escherichia coli H299]
 gi|123049490|sp|Q0TLF0|RNH2_ECOL5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|226736820|sp|B7N850|RNH2_ECOLU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|226736821|sp|B1LGY5|RNH2_ECOSM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807974|sp|B7UJ84|RNH2_ECO27 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807976|sp|B7MP43|RNH2_ECO81 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|110341994|gb|ABG68231.1| ribonuclease HII [Escherichia coli 536]
 gi|170518603|gb|ACB16781.1| ribonuclease HII [Escherichia coli SMS-3-5]
 gi|190906960|gb|EDV66562.1| ribonuclease HII [Escherichia coli F11]
 gi|215263416|emb|CAS07736.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218425622|emb|CAR06408.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           ED1a]
 gi|218430534|emb|CAR11400.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           UMN026]
 gi|222032013|emb|CAP74752.1| ribonuclease HII [Escherichia coli LF82]
 gi|281177408|dbj|BAI53738.1| ribonuclease HII [Escherichia coli SE15]
 gi|284919958|emb|CBG33013.1| ribonuclease HII [Escherichia coli 042]
 gi|291430167|gb|EFF03181.1| rnhB [Escherichia coli FVEC1412]
 gi|298281122|gb|EFI22623.1| ribonuclease HII [Escherichia coli FVEC1302]
 gi|300306593|gb|EFJ61113.1| ribonuclease HII [Escherichia coli MS 200-1]
 gi|300355728|gb|EFJ71598.1| ribonuclease HII [Escherichia coli MS 198-1]
 gi|300456472|gb|EFK19965.1| ribonuclease HII [Escherichia coli MS 21-1]
 gi|305850880|gb|EFM51335.1| ribonuclease HII [Escherichia coli NC101]
 gi|309700391|emb|CBI99679.1| ribonuclease HII [Escherichia coli ETEC H10407]
 gi|312289563|gb|EFR17457.1| ribonuclease HII family protein [Escherichia coli 2362-75]
 gi|312944791|gb|ADR25618.1| ribonuclease HII [Escherichia coli O83:H1 str. NRG 857C]
 gi|320196940|gb|EFW71561.1| Ribonuclease HII [Escherichia coli WV_060327]
 gi|323190417|gb|EFZ75692.1| ribonuclease HII family protein [Escherichia coli RN587/1]
 gi|324008245|gb|EGB77464.1| ribonuclease HII [Escherichia coli MS 57-2]
 gi|324014099|gb|EGB83318.1| ribonuclease HII [Escherichia coli MS 60-1]
 gi|330910033|gb|EGH38543.1| ribonuclease H2 [Escherichia coli AA86]
 gi|331046083|gb|EGI18202.1| ribonuclease HII [Escherichia coli M605]
 gi|331052296|gb|EGI24335.1| ribonuclease HII [Escherichia coli TA206]
 gi|331081789|gb|EGI52950.1| ribonuclease HII [Escherichia coli H299]
          Length = 198

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 111/182 (60%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L E+I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  + AV+KGDS   
Sbjct: 72  RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSRVP 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|283835245|ref|ZP_06354986.1| ribonuclease HII [Citrobacter youngae ATCC 29220]
 gi|291068956|gb|EFE07065.1| ribonuclease HII [Citrobacter youngae ATCC 29220]
          Length = 198

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 111/183 (60%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L+++I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIIGLNDSKKLSEKRRLALFDEIKEKALSWSVG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P  LP  + AV+KGDS   
Sbjct: 72  RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPA-LPVPSMAVVKGDSRVA 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H + +   G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMAALDTVFPQYGFAQHKGYPTAFHLEKLALHGATEHHRRSFGPV 190

Query: 205 RNL 207
           + +
Sbjct: 191 KRV 193


>gi|322435742|ref|YP_004217954.1| Ribonuclease H [Acidobacterium sp. MP5ACTX9]
 gi|321163469|gb|ADW69174.1| Ribonuclease H [Acidobacterium sp. MP5ACTX9]
          Length = 247

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 85/211 (40%), Positives = 124/211 (58%), Gaps = 13/211 (6%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF---GI 57
           + C+  PE+        +R +    +AG+DEVGRGAL GPVV AA+IL          G+
Sbjct: 17  LVCSDAPEQA-------LRYRGARSIAGVDEVGRGALFGPVVAAAVILPAGLASLAKAGL 69

Query: 58  NDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116
            DSK+++ ++RE L ++I   AI +S++    + ID+ NI++AT  A+  AVE L + P 
Sbjct: 70  TDSKQLTREERESLDKRIRRMAIAVSVAEIDAETIDRVNIYQATRLAMLQAVEGLAIAPD 129

Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
             LID   +    PC    +  GD++SLSIAAAS++AKV RD LMR     +P YG  SH
Sbjct: 130 HLLIDAMVVSH--PCPQTKLFYGDALSLSIAAASVVAKVHRDGLMRELDLVHPQYGLASH 187

Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
            GY T +H++ + E G   +HR +F P+R L
Sbjct: 188 KGYATPEHRRALLEHGACALHRHSFAPVRAL 218


>gi|154245214|ref|YP_001416172.1| ribonuclease HII [Xanthobacter autotrophicus Py2]
 gi|238686707|sp|A7IES2|RNH2_XANP2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|154159299|gb|ABS66515.1| Ribonuclease H [Xanthobacter autotrophicus Py2]
          Length = 249

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 90/195 (46%), Positives = 125/195 (64%), Gaps = 6/195 (3%)

Query: 17  MVREKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
             RE+ ++     PVAG DEVGRG LAGPVV AA++LDP  +P G++DSKK++  KRE L
Sbjct: 40  FTRERALYADGRAPVAGADEVGRGPLAGPVVAAAVVLDPARVPQGLDDSKKLTRAKRESL 99

Query: 72  YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           Y +I ++A ++I+ A  + ID+ NI +ATL A+ +AV  L   P   L+DG   P  + C
Sbjct: 100 YLEICATAEVAIALAPPERIDRDNIRQATLWALANAVRGLPCRPAFLLVDGNDPPR-VDC 158

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +  A++ GD +  SIAAASI+AKV RDRLM      +P YGF+ H+GY T +H   +K  
Sbjct: 159 EVEAIVGGDGLVASIAAASIVAKVVRDRLMAGVGAAFPAYGFERHMGYGTREHGAALKAH 218

Query: 192 GPSCIHRLTFRPLRN 206
           GP   HR +F P+R 
Sbjct: 219 GPCLHHRRSFAPVRE 233


>gi|239993624|ref|ZP_04714148.1| ribonuclease HII [Alteromonas macleodii ATCC 27126]
          Length = 190

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 87/183 (47%), Positives = 113/183 (61%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP N   G+ DSKK+S KKR  L ++I   A+  +I 
Sbjct: 5   IAGVDEVGRGPLVGDVVTAAVILDPENPIEGLTDSKKLSEKKRVALAQEIREKALYWNIG 64

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + IDK NI  AT+ A+  AVE L V P    +DG  +P     ++ AV+KGDS+  
Sbjct: 65  RASPEEIDKLNILHATMLAMIRAVEGLPVRPDFVRVDGNRVPA-WNFESEAVVKGDSLHA 123

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKV RD  M   H+ YP Y F  H GYPT  H + I E G    +R +F+P+
Sbjct: 124 EISAASIIAKVERDNDMISLHEAYPQYNFAGHKGYPTKAHFEAIAEYGILDCYRKSFKPV 183

Query: 205 RNL 207
           + L
Sbjct: 184 KAL 186


>gi|26246129|ref|NP_752168.1| ribonuclease HII [Escherichia coli CFT073]
 gi|227884904|ref|ZP_04002709.1| ribonuclease HII [Escherichia coli 83972]
 gi|300993596|ref|ZP_07180452.1| ribonuclease HII [Escherichia coli MS 45-1]
 gi|301049903|ref|ZP_07196829.1| ribonuclease HII [Escherichia coli MS 185-1]
 gi|29336711|sp|Q8FL06|RNH2_ECOL6 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|26106526|gb|AAN78712.1|AE016755_212 Ribonuclease HII [Escherichia coli CFT073]
 gi|227838042|gb|EEJ48508.1| ribonuclease HII [Escherichia coli 83972]
 gi|300298356|gb|EFJ54741.1| ribonuclease HII [Escherichia coli MS 185-1]
 gi|300406519|gb|EFJ90057.1| ribonuclease HII [Escherichia coli MS 45-1]
 gi|307552033|gb|ADN44808.1| ribonuclease HII [Escherichia coli ABU 83972]
 gi|315294587|gb|EFU53934.1| ribonuclease HII [Escherichia coli MS 153-1]
 gi|323975649|gb|EGB70745.1| ribonuclease HII [Escherichia coli TW10509]
          Length = 198

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 111/182 (60%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L E+I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  + AV+KGDS   
Sbjct: 72  RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSRVP 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|254480314|ref|ZP_05093562.1| ribonuclease HII [marine gamma proteobacterium HTCC2148]
 gi|214039876|gb|EEB80535.1| ribonuclease HII [marine gamma proteobacterium HTCC2148]
          Length = 200

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 87/184 (47%), Positives = 117/184 (63%), Gaps = 4/184 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG LAG VV AA+ILDP+N   G+ DSKK+S  +REEL   I   AI  SI+
Sbjct: 14  IAGVDEVGRGPLAGDVVTAAVILDPSNPVEGLRDSKKLSESRREELAIIIREKAIAWSIA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            AS   ID+ NI +A+L A+  AVE L   P   L+DG  +P+   P +   V+KGD   
Sbjct: 74  RASVAEIDELNILQASLLAMKRAVEALTPQPGYVLVDGNRLPQWSYPSEP--VVKGDDRV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV RD  +    +KYP YGF +H GYPTA H   ++  G + +HR ++ P
Sbjct: 132 PAIAAASILAKVQRDNELVALEQKYPGYGFAAHKGYPTAAHLHALQSLGVTPVHRRSYAP 191

Query: 204 LRNL 207
           +R +
Sbjct: 192 VRRI 195


>gi|193215094|ref|YP_001996293.1| ribonuclease HII [Chloroherpeton thalassium ATCC 35110]
 gi|238692680|sp|B3QRP3|RNH2_CHLT3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|193088571|gb|ACF13846.1| Ribonuclease H [Chloroherpeton thalassium ATCC 35110]
          Length = 204

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 87/187 (46%), Positives = 110/187 (58%), Gaps = 5/187 (2%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKIT 76
           K    + G+DEVGRG LAGPVV AA+I D    P+ I   I+DSK + H+ R  L  +I 
Sbjct: 11  KKFQYICGVDEVGRGPLAGPVVAAAVIFDRYFEPSGILEQIDDSKALRHETRVLLSSEIK 70

Query: 77  SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135
             A+  SI+  S + ID+ NI +AT  A+  A+E L  IP   LIDG      LP     
Sbjct: 71  KQALSFSIAEISPEVIDEVNILQATFLAMNQAIEQLSPIPEFLLIDGNRFKTTLPIPFET 130

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           V+KGDS   SIAAASIIAKV RD  M    ++YP+YGF  H GYPT  H + IK  G S 
Sbjct: 131 VVKGDSKVFSIAAASIIAKVHRDNFMINLAERYPEYGFAQHFGYPTKAHIEAIKMFGRSK 190

Query: 196 IHRLTFR 202
           +HR +F+
Sbjct: 191 VHRKSFK 197


>gi|324112406|gb|EGC06383.1| ribonuclease HII [Escherichia fergusonii B253]
 gi|325496115|gb|EGC93974.1| ribonuclease HII [Escherichia fergusonii ECD227]
          Length = 198

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 111/182 (60%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L E+I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  + AV+KGDS   
Sbjct: 72  RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSRVP 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|331085160|ref|ZP_08334246.1| hypothetical protein HMPREF0987_00549 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407943|gb|EGG87433.1| hypothetical protein HMPREF0987_00549 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 254

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 90/194 (46%), Positives = 122/194 (62%), Gaps = 6/194 (3%)

Query: 14  LEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           +EAM   +N +     + GIDEVGRG LAGPVV  A+IL  ++    +NDSKK++ K+RE
Sbjct: 56  IEAMKSYENKYRDAAFICGIDEVGRGPLAGPVVAGAVILPKDSQILYLNDSKKLTEKRRE 115

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           ELYE I   A+ + I   S   ID+ NI +AT +A++ AV  L V P   L D  +IP  
Sbjct: 116 ELYEVIMREAVAVGIGIVSPARIDEINILQATYEAMWEAVGKLCVEPNVLLNDAVTIPMI 175

Query: 129 LP-CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            P      +IKGD+ S+SIAAASI+AKVTRDRLM    +  P YGF S+ GY +++H   
Sbjct: 176 PPHIVQVPIIKGDAKSVSIAAASIVAKVTRDRLMTEYEEVLPGYGFASNKGYGSSEHIAA 235

Query: 188 IKEKGPSCIHRLTF 201
           +K+ GP+ IHR +F
Sbjct: 236 LKKYGPTPIHRRSF 249


>gi|304312462|ref|YP_003812060.1| Ribonuclease HII [gamma proteobacterium HdN1]
 gi|301798195|emb|CBL46417.1| Ribonuclease HII [gamma proteobacterium HdN1]
          Length = 201

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 85/195 (43%), Positives = 121/195 (62%), Gaps = 4/195 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
           L ++   +++  +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S KKRE+L E
Sbjct: 4   LSSITDNRDVGLIAGVDEVGRGPLIGAVVAAAVILDPAKPIEGLTDSKKLSEKKREQLAE 63

Query: 74  KITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPC 131
           +I + A+  +I  A  + ID+ NI +A+L A+  AV  L + P   L+DG   P   LPC
Sbjct: 64  QIRAQALAWAIGRAEAEEIDRINILQASLLAMQRAVLQLAIQPDLVLVDGNRCPRLSLPC 123

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +  A++KGD +   I+AASI+AKV RD+ M    ++YP YG   H GYPTA H   I+  
Sbjct: 124 R--AIVKGDLLVPCISAASILAKVARDQEMLEMDRRYPHYGLAQHKGYPTAAHLAAIEIH 181

Query: 192 GPSCIHRLTFRPLRN 206
           G +  HR +F P++ 
Sbjct: 182 GIAPEHRRSFGPIKK 196


>gi|257126162|ref|YP_003164276.1| ribonuclease H [Leptotrichia buccalis C-1013-b]
 gi|257050101|gb|ACV39285.1| Ribonuclease H [Leptotrichia buccalis C-1013-b]
          Length = 214

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 85/188 (45%), Positives = 117/188 (62%), Gaps = 9/188 (4%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREELYEKITS 77
           EK    V G+DE GRG LAGPVV  A+I+   + P    INDSKK++ KKRE L+E I  
Sbjct: 18  EKYNKIVVGVDEAGRGPLAGPVVAGAVIV-IQDFPELQEINDSKKLTEKKRERLFEAIEK 76

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA----LIDGRSIPEDLPCQA 133
           + I+ I  AS + ID+ NI  AT  A+  A+   QV  +SA    L+DG  +  +   + 
Sbjct: 77  NCIVGIGIASEKEIDEMNILNATFLAMRRAIN--QVAEKSAFDIVLVDGNHLIREYEGEQ 134

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             ++KGDS SL+IA ASI+AKVTRDR++    K++P+Y F+ H GY T KH++++ EKG 
Sbjct: 135 ECIVKGDSKSLAIATASIVAKVTRDRMLCEIAKEFPEYQFEKHKGYGTKKHREILLEKGA 194

Query: 194 SCIHRLTF 201
              HR TF
Sbjct: 195 CRYHRKTF 202


>gi|289662893|ref|ZP_06484474.1| ribonuclease HII [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 242

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 82/182 (45%), Positives = 118/182 (64%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII-SI 83
           VAG+DE GRG LAGPV VAA++ DP+     G++DSK+++ ++RE+LY +I   A+  S+
Sbjct: 33  VAGVDEAGRGPLAGPVAVAAVVFDPSKPRINGLDDSKQLTAERREQLYARIVDRALAWSV 92

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
                + ID+ NI++AT+  +  AVE +  +   A IDG  +P+ LPC A A+I GD++ 
Sbjct: 93  VLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALD 152

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I AASI+AKVTRDRLM   H ++P Y FD H GY T  H   ++  GP   HR +F P
Sbjct: 153 RAIMAASIVAKVTRDRLMHALHAQHPQYRFDQHKGYSTPVHLAALQTHGPCPQHRRSFAP 212

Query: 204 LR 205
           +R
Sbjct: 213 VR 214


>gi|15837643|ref|NP_298331.1| ribonuclease HII [Xylella fastidiosa 9a5c]
 gi|11387105|sp|Q9PEI7|RNH2_XYLFA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|9105983|gb|AAF83851.1|AE003941_5 ribonuclease HII [Xylella fastidiosa 9a5c]
          Length = 234

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 89/191 (46%), Positives = 118/191 (61%), Gaps = 8/191 (4%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSA- 79
           N   VAG+DE GRG LAGPVVVAA++ DP+     G+NDSK++S   RE LY  I   A 
Sbjct: 14  NTALVAGVDEAGRGPLAGPVVVAAVVFDPSQPRINGLNDSKQLSPACRERLYAHIVERAL 73

Query: 80  ---IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136
              ++ I S     ID  NI++AT+  +  AVE +  + +SA IDG  +P++LPC A A+
Sbjct: 74  AYKVVMIDSTQ---IDTLNIYQATMLGMRLAVEGVAHVAKSARIDGNRLPKNLPCPAEAL 130

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           + GD+   +I AASI+AKVTRDR M   H +YP YGFD H GY T  H   + E GP   
Sbjct: 131 VGGDARDRTIMAASILAKVTRDRHMVELHLQYPHYGFDKHKGYGTPAHLAALAEHGPCLE 190

Query: 197 HRLTFRPLRNL 207
           HR +F P+R +
Sbjct: 191 HRRSFAPVRKM 201


>gi|82542782|ref|YP_406729.1| ribonuclease HII [Shigella boydii Sb227]
 gi|97189266|sp|Q325V7|RNH2_SHIBS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|81244193|gb|ABB64901.1| RNAse HII [Shigella boydii Sb227]
 gi|332098751|gb|EGJ03711.1| ribonuclease HII family protein [Shigella boydii 3594-74]
          Length = 198

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 110/182 (60%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L E+I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  A  V+KGDS   
Sbjct: 72  RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMVVVKGDSRVP 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|327398743|ref|YP_004339612.1| Ribonuclease H [Hippea maritima DSM 10411]
 gi|327181372|gb|AEA33553.1| Ribonuclease H [Hippea maritima DSM 10411]
          Length = 382

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 85/186 (45%), Positives = 114/186 (61%), Gaps = 2/186 (1%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAII 81
           M   AG+DE GRG  AGPVV A +IL+ +    G I+DSKK+S KKREELY  I  ++I 
Sbjct: 1   MGKTAGVDEAGRGPWAGPVVAACVILNKDIPHLGDIDDSKKLSPKKREELYRVIKENSIY 60

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
            I   S++ IDK  I KA   AI  A++ +   P   LIDG+    DLP +   +I+GD+
Sbjct: 61  GIGVVSNKEIDKLGIVKAVELAIKRAIDVMDEKPSFLLIDGKD-RFDLPIKYKTIIEGDA 119

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
              SIAAASI+AKV RDR M +    YP YGF+ H GY T  H   +++ GP  IHR +F
Sbjct: 120 KVKSIAAASILAKVWRDRYMELVADIYPKYGFEKHKGYGTKAHTLALEKYGPCQIHRFSF 179

Query: 202 RPLRNL 207
           +P++ +
Sbjct: 180 KPIQRV 185


>gi|322389594|ref|ZP_08063143.1| ribonuclease HII [Streptococcus parasanguinis ATCC 903]
 gi|321143720|gb|EFX39149.1| ribonuclease HII [Streptococcus parasanguinis ATCC 903]
          Length = 255

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 88/203 (43%), Positives = 125/203 (61%), Gaps = 9/203 (4%)

Query: 12  FELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
             LE M+  EK ++      +AG+DEVGRG LAGPVV AA+IL  N    G+NDSKKI  
Sbjct: 52  LRLEKMLAYEKELYTQGIHLIAGVDEVGRGPLAGPVVAAAVILPENCKIPGLNDSKKIPK 111

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
            K   +Y+ +   A+ + I    +Q ID+ NI++AT  A+  A++ L   P+  LID   
Sbjct: 112 SKHHAIYQAVLDQALSVGIGIKDNQVIDQVNIYEATKLAMLEAIQELDPRPQHLLIDAMR 171

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +  DLP    ++IKGD+ SLSIAAASI+AKVTRD++M     +YP Y F  +VGY TA H
Sbjct: 172 L--DLPIPQTSIIKGDANSLSIAAASIVAKVTRDQMMEEFDCEYPGYDFTQNVGYGTANH 229

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
              + + G + IHR +F P++++
Sbjct: 230 LAGLHKLGVTPIHRRSFEPIKSM 252


>gi|301103372|ref|XP_002900772.1| ribonuclease HII [Phytophthora infestans T30-4]
 gi|262101527|gb|EEY59579.1| ribonuclease HII [Phytophthora infestans T30-4]
          Length = 249

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 92/199 (46%), Positives = 117/199 (58%), Gaps = 7/199 (3%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E     K    V G+DE GRG LAGPVV AA  +  +    GI+DSKKI   +RE L+E
Sbjct: 35  FETRYEAKGYTTVIGVDEAGRGPLAGPVVAAACHVPLDVTIAGIDDSKKILEPQREALFE 94

Query: 74  KITSSAIIS--ISSASHQYIDKHNIHKATLDAIYHAV----ENLQVIPRS-ALIDGRSIP 126
            +TS   I+  +   S Q ID  NI +A+L+++  +V    + LQ   ++  L+DG  +P
Sbjct: 95  LLTSHPNITYAVHVNSPQRIDDINILQASLESMTKSVNEVAQQLQQKDKTFVLVDGNKLP 154

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             L   A AV+KGDS   SIAAASIIAKVTRDRLMR    K+P YG   H GYPT  H  
Sbjct: 155 PTLELPAEAVVKGDSKVYSIAAASIIAKVTRDRLMREYDVKFPQYGLAQHKGYPTRDHVA 214

Query: 187 VIKEKGPSCIHRLTFRPLR 205
            I + GP  IHR+TF PL+
Sbjct: 215 AIAKHGPCEIHRMTFAPLK 233


>gi|320120511|gb|EFE28779.2| ribonuclease HII [Filifactor alocis ATCC 35896]
          Length = 256

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 78/182 (42%), Positives = 113/182 (62%), Gaps = 1/182 (0%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           K +  V G+DE GRG LAGPVV A +I+  +++  G+NDSKKI    REELY+K+   +I
Sbjct: 72  KGILLVGGVDEAGRGPLAGPVVAACVIMKSDSLILGMNDSKKIKETVREELYDKVIQDSI 131

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
              I  AS + ID++NI +AT  A+  A++ ++ +P   L+DG     +   +   VI G
Sbjct: 132 SFGIGIASSEEIDRYNILQATFLAMKRAMQEMKQVPDLVLVDGNQEISNCSIRQETVIHG 191

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DSI  SIA ASI+AKV RDR+MR   + YP++ F S+ GY T+ H   ++  G + IHR 
Sbjct: 192 DSICYSIACASILAKVYRDRIMRDYDRIYPEFDFLSNKGYGTSHHYDALRTYGVTPIHRK 251

Query: 200 TF 201
           +F
Sbjct: 252 SF 253


>gi|167463784|ref|ZP_02328873.1| Ribonuclease H [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322382568|ref|ZP_08056448.1| ribonuclease HII-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153484|gb|EFX45889.1| ribonuclease HII-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 227

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 89/197 (45%), Positives = 118/197 (59%), Gaps = 10/197 (5%)

Query: 17  MVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           + +EK +W      +AGIDEVGRG L G VV AA+IL  ++    INDSKK++ KKRE L
Sbjct: 27  LQKEKELWAAGYTAIAGIDEVGRGCLFGDVVAAAVILPADSYIEEINDSKKLTEKKREAL 86

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +E I + A+ + I     Q I++ NI +A   A+  AVE L + P   LID   +    P
Sbjct: 87  FETIMNEAVAVGIGRVDVQTIERINIKQAARLAMKLAVEELALAPDYLLIDAEKVDLSFP 146

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            +A  VI GD +S SIAAASI+AKVTRDRL       YP YG   H GY T +H++ I+ 
Sbjct: 147 QEA--VIHGDELSQSIAAASIVAKVTRDRLCAEWDGLYPGYGIAGHKGYATKEHREQIRL 204

Query: 191 KGPSCIHRLTFRPLRNL 207
            GP+ +HR  F  LRN+
Sbjct: 205 LGPTPLHRSLF--LRNI 219


>gi|289208655|ref|YP_003460721.1| ribonuclease H [Thioalkalivibrio sp. K90mix]
 gi|288944286|gb|ADC71985.1| Ribonuclease H [Thioalkalivibrio sp. K90mix]
          Length = 226

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 89/187 (47%), Positives = 114/187 (60%), Gaps = 3/187 (1%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78
           R  N W VAG+DEVGRG LAGPVV AA+IL  +    G+ DSKK+S  +R+ L  +I   
Sbjct: 30  RVTNAW-VAGVDEVGRGPLAGPVVAAAVILPESFAAPGLTDSKKLSAGRRQALDVEIRER 88

Query: 79  AII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137
           A+  ++  A    ID  NIH+ATL A+  AV  L   P   L+DGR  PE  P  A A++
Sbjct: 89  AVAWALGRAEAAEIDALNIHRATLLAMQRAVAALSQAPDHLLVDGRFTPEG-PWSAEAIV 147

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
            GD    +I+AAS+IAKV RD  M   H++YPDYGFD H GYPTA H+  +   GP   H
Sbjct: 148 GGDGSVAAISAASVIAKVARDAEMTALHERYPDYGFDRHAGYPTAYHRDALARLGPCVEH 207

Query: 198 RLTFRPL 204
           R +F P+
Sbjct: 208 RRSFGPV 214


>gi|167648321|ref|YP_001685984.1| ribonuclease HII [Caulobacter sp. K31]
 gi|189043575|sp|B0SZF7|RNH2_CAUSK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|167350751|gb|ABZ73486.1| Ribonuclease H [Caulobacter sp. K31]
          Length = 230

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 91/202 (45%), Positives = 121/202 (59%), Gaps = 4/202 (1%)

Query: 7   PERPHFELEAMVREKNMWP--VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           P+   F    M+ E    P  V G+DE GRG  AGPV  AA+ILDP+ +P G++DSKK+S
Sbjct: 11  PQARTFTGPDMMLEAACGPGLVCGVDEAGRGPWAGPVSAAAVILDPSRVPKGLDDSKKLS 70

Query: 65  HKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            K R  L  +I   A+   +  AS + I++ NI  A   A+  A++ L V P  AL+DG 
Sbjct: 71  AKARAVLEIEIKQVAVAWCVGLASIEEIEELNILHAAGLAMCRAIDGLSVKPDIALVDGN 130

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
              E LPC    VIKGDS+S SIAAASI+AK  RDR+M      +P YGF SH GY  A 
Sbjct: 131 YRFE-LPCPIKTVIKGDSLSCSIAAASILAKEARDRIMVEMDALHPGYGFASHKGYHAAI 189

Query: 184 HQQVIKEKGPSCIHRLTFRPLR 205
           H + ++  GPS IHRL++ P++
Sbjct: 190 HVEGLRRLGPSPIHRLSWAPVK 211


>gi|78224061|ref|YP_385808.1| ribonuclease HII [Geobacter metallireducens GS-15]
 gi|97182538|sp|Q39RP1|RNH2_GEOMG RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|78195316|gb|ABB33083.1| RNase HII [Geobacter metallireducens GS-15]
          Length = 213

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 96/205 (46%), Positives = 125/205 (60%), Gaps = 4/205 (1%)

Query: 4   NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           + I ER  +  E +V       VAG+DE GRG LAGPVV AA+IL       G++DSKK+
Sbjct: 7   DDIGERSLWTFENLVSRNGFHAVAGVDEAGRGPLAGPVVAAAVILPQGAELPGVDDSKKL 66

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           S  KRE L+  I+  A+ + +  A H  ID+ NI +ATL A+  AV  L V P   LIDG
Sbjct: 67  SAPKREHLFGLISGCALAVGVGVADHACIDRINILQATLRAMAEAVGQLAVPPDYLLIDG 126

Query: 123 -RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
             +IP +LP +   + KGDS S+SIA+ASI+AKVTRDR+M    +++P YGF  H GY  
Sbjct: 127 ISTIPLNLPQKT--IKKGDSSSISIASASIVAKVTRDRMMMEYDQQFPGYGFAEHKGYGC 184

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRN 206
           A H   I E GP  IHR TFR ++ 
Sbjct: 185 ASHLAAIAELGPCPIHRKTFRGVKE 209


>gi|254414639|ref|ZP_05028404.1| ribonuclease HII [Microcoleus chthonoplastes PCC 7420]
 gi|196178487|gb|EDX73486.1| ribonuclease HII [Microcoleus chthonoplastes PCC 7420]
          Length = 211

 Score =  148 bits (373), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 117/183 (63%), Gaps = 5/183 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI- 80
           +AG+DEVGRGAL GPVV AA+IL  + +P     G+ DSK+++  +R++L ++I   A+ 
Sbjct: 22  IAGVDEVGRGALFGPVVAAAVILPASTLPNLAGSGMKDSKQLTRLRRQKLAQEIQELAVD 81

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            SI  A+   ID+ NI +A+L A+  AV  L+V P   LIDGR     LP    ++IKGD
Sbjct: 82  WSIGYATSTEIDQINILQASLLAMKRAVLKLKVQPDLCLIDGRQALVGLPVPQKSLIKGD 141

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
             SL IAAASI+AKV RD L+     KYPDY   ++ GY T +H+  ++E GPS  HR +
Sbjct: 142 QRSLEIAAASIVAKVWRDDLVGRLATKYPDYDLAANKGYGTERHRLALQEFGPSPQHRRS 201

Query: 201 FRP 203
           FRP
Sbjct: 202 FRP 204


>gi|326316587|ref|YP_004234259.1| ribonuclease H [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373423|gb|ADX45692.1| Ribonuclease H [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 240

 Score =  148 bits (373), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 81/181 (44%), Positives = 118/181 (65%), Gaps = 4/181 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DE GRG LAGPVV AA+ILD      G+ DSK ++  +RE L+++I + A+  S++
Sbjct: 23  VAGVDEAGRGPLAGPVVAAAVILDELQPIDGLADSKTLTAARREALFDEIRAKALCCSVA 82

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            A+ + ID  NI +AT+ A+  AV  L++ P   L+DG  +P  D+P +A  ++KGD++ 
Sbjct: 83  EATVEEIDTLNILQATMLAMRRAVAGLRLKPVRVLVDGNRLPPLDVPAEA--IVKGDALV 140

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AKVTRDR     H+ YP YGF SH GY TA+H   ++  G    HR +F P
Sbjct: 141 QAISAASILAKVTRDRWCAQLHQAYPHYGFASHKGYGTAEHMAALQVHGACPEHRRSFAP 200

Query: 204 L 204
           +
Sbjct: 201 V 201


>gi|325579117|ref|ZP_08149073.1| ribonuclease HII [Haemophilus parainfluenzae ATCC 33392]
 gi|325159352|gb|EGC71486.1| ribonuclease HII [Haemophilus parainfluenzae ATCC 33392]
          Length = 200

 Score =  148 bits (373), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 83/182 (45%), Positives = 113/182 (62%), Gaps = 1/182 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG L G VV AA+ILDPN    G+ DSKK+S KKR  L  +I   A+  ++ 
Sbjct: 13  VAGVDEVGRGPLVGAVVTAAVILDPNKPIAGLADSKKLSEKKRLALAAEIKEKALAWAMG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  A++ A+  AV+ L++ P   L+DG  IP +L   A AV+KGDS+  
Sbjct: 73  RAEPAEIDELNILHASMLAMERAVKALKIQPHFVLVDGNRIPPNLGFPAQAVVKGDSLVA 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M    K +P+Y F  H GYPT  H + + E GP   +R +F P+
Sbjct: 133 EISAASILAKVARDQEMEELDKNHPEYAFAQHKGYPTKLHLEKLAELGPLPEYRRSFSPV 192

Query: 205 RN 206
           + 
Sbjct: 193 KK 194


>gi|304414200|ref|ZP_07395568.1| Ribonuclease HII [Candidatus Regiella insecticola LSR1]
 gi|304283414|gb|EFL91810.1| Ribonuclease HII [Candidatus Regiella insecticola LSR1]
          Length = 224

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 87/180 (48%), Positives = 109/180 (60%), Gaps = 2/180 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84
           +AG+DEVGR  L G VV AA+ILDP+    G+ DSKK+S KKR  LY+ IT  A   SI 
Sbjct: 30  IAGVDEVGRVPLVGAVVTAAVILDPSQPIEGLADSKKLSEKKRRALYQAITQKARSWSIG 89

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  ATL A+  AV  L + P   LIDG   P  L     AV+KGDS+  
Sbjct: 90  RAEPEEIDRLNILNATLLAMQRAVAGLDLTPDYVLIDGNRCPH-LSMPTMAVVKGDSLVA 148

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M    +++P YGF  H GYPTA H + +   G    HR +F P+
Sbjct: 149 EISAASILAKVTRDREMVALDQRFPGYGFAQHKGYPTALHLKKLAALGVIPDHRRSFAPV 208


>gi|71899396|ref|ZP_00681555.1| Ribonuclease H [Xylella fastidiosa Ann-1]
 gi|71730805|gb|EAO32877.1| Ribonuclease H [Xylella fastidiosa Ann-1]
          Length = 234

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 89/191 (46%), Positives = 118/191 (61%), Gaps = 8/191 (4%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSA- 79
           N   VAG+DE GRG LAGPVVVAA++ DP+     G+NDSK++S   RE LY  I   A 
Sbjct: 14  NTALVAGVDEAGRGPLAGPVVVAAVVFDPSQPHINGLNDSKQLSPACRERLYAHIVERAL 73

Query: 80  ---IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136
              ++ I S     ID  NI++AT+  +  AVE +  + +SA IDG  +P++LPC A A+
Sbjct: 74  AYKVVMIDSTQ---IDTLNIYQATMLGMRLAVEGVAHVAKSARIDGNRLPKNLPCPAEAL 130

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           + GD+   +I AASI+AKVTRDR M   H +YP YGFD H GY T  H   + E GP   
Sbjct: 131 VGGDTRDPTIMAASILAKVTRDRHMVELHLQYPHYGFDKHKGYGTPAHLAALAEHGPCLE 190

Query: 197 HRLTFRPLRNL 207
           HR +F P+R +
Sbjct: 191 HRQSFAPVRRM 201


>gi|332188926|ref|ZP_08390627.1| ribonuclease HII family protein [Sphingomonas sp. S17]
 gi|332011037|gb|EGI53141.1| ribonuclease HII family protein [Sphingomonas sp. S17]
          Length = 198

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 79/184 (42%), Positives = 114/184 (61%), Gaps = 5/184 (2%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           P+ G+DE GRG LAGPVV AA+IL   + P GINDSKK++ K R  L  +I S AI+ + 
Sbjct: 9   PLCGVDEAGRGPLAGPVVAAAVILPERDCPSGINDSKKLTEKTRARLCAEIRSCAIVGVG 68

Query: 85  SASHQYIDKHNIHKATLDAIYHAVE----NLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
               + ID+ NI+ AT+ A+  AV+     L   P   L+DG  +P+     A A++ GD
Sbjct: 69  VVEPEEIDRLNIYWATMKAMTLAVDAVVAGLGRAPAHVLVDGNRLPK-WGYTATAIVGGD 127

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           + SL+I AASI+AK  RD +M  A + +P YG+ S+ GY +A H   ++E GP+ +HR +
Sbjct: 128 AKSLAIGAASIVAKHVRDEMMIAAAEDWPAYGWHSNKGYGSATHLAALREHGPTPLHRRS 187

Query: 201 FRPL 204
           F P+
Sbjct: 188 FAPV 191


>gi|39934109|ref|NP_946385.1| ribonuclease HII [Rhodopseudomonas palustris CGA009]
 gi|81563831|sp|Q6NAZ6|RNH2_RHOPA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|39647957|emb|CAE26477.1| possible ribonuclease HII [Rhodopseudomonas palustris CGA009]
          Length = 304

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 89/195 (45%), Positives = 125/195 (64%), Gaps = 1/195 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E  + ++ +WP+AG DE GRG LAGPVV AA++LDP  +P G++DSK++S +KRE
Sbjct: 82  PSFRRERALIKRGIWPIAGCDEAGRGPLAGPVVAAAVVLDPKRVPKGLDDSKRLSAEKRE 141

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L+E+I ++A +S+  AS + I++ NI +A+L A+  AV  L  +PR   +DGR      
Sbjct: 142 ALFEEICATAQVSVVYASPERINRDNILRASLWALTRAVHALPDLPRHVFVDGRDRLATQ 201

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C   AVI GD +  SIAAASIIAKV+RDRLM    ++ P YGF+ H GY   +H   + 
Sbjct: 202 -CDCEAVIGGDGLIASIAAASIIAKVSRDRLMCKLAEQCPGYGFEQHKGYGVPEHLDALA 260

Query: 190 EKGPSCIHRLTFRPL 204
             GP+  HR  F P+
Sbjct: 261 RLGPTVHHRRFFAPV 275


>gi|170021464|ref|YP_001726418.1| ribonuclease HII [Escherichia coli ATCC 8739]
 gi|194439910|ref|ZP_03071972.1| ribonuclease HII [Escherichia coli 101-1]
 gi|253774790|ref|YP_003037621.1| ribonuclease HII [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254160302|ref|YP_003043410.1| ribonuclease HII [Escherichia coli B str. REL606]
 gi|300932137|ref|ZP_07147422.1| ribonuclease HII [Escherichia coli MS 187-1]
 gi|312970284|ref|ZP_07784466.1| ribonuclease HII family protein [Escherichia coli 1827-70]
 gi|189043595|sp|B1IQF8|RNH2_ECOLC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|169756392|gb|ACA79091.1| Ribonuclease H [Escherichia coli ATCC 8739]
 gi|194421156|gb|EDX37181.1| ribonuclease HII [Escherichia coli 101-1]
 gi|242376014|emb|CAQ30697.1| RNAse HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           BL21(DE3)]
 gi|253325834|gb|ACT30436.1| Ribonuclease H [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972203|gb|ACT37874.1| ribonuclease HII [Escherichia coli B str. REL606]
 gi|253976412|gb|ACT42082.1| ribonuclease HII [Escherichia coli BL21(DE3)]
 gi|300460113|gb|EFK23606.1| ribonuclease HII [Escherichia coli MS 187-1]
 gi|310337782|gb|EFQ02893.1| ribonuclease HII family protein [Escherichia coli 1827-70]
 gi|323959944|gb|EGB55591.1| ribonuclease HII [Escherichia coli H489]
          Length = 198

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 111/182 (60%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L E+I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  + AV+KGDS   
Sbjct: 72  RAEPYEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSRVP 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|288905300|ref|YP_003430522.1| ribonuclease HII [Streptococcus gallolyticus UCN34]
 gi|306831379|ref|ZP_07464538.1| ribonuclease HII [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325978285|ref|YP_004288001.1| ribonuclease HII [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|288732026|emb|CBI13591.1| ribonuclease HII [Streptococcus gallolyticus UCN34]
 gi|304426439|gb|EFM29552.1| ribonuclease HII [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325178213|emb|CBZ48257.1| rnhB [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 259

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 90/206 (43%), Positives = 126/206 (61%), Gaps = 12/206 (5%)

Query: 12  FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
             LE M+R EK ++      +AGIDEVGRG LAGPVV A +IL  N     +NDSKKI  
Sbjct: 52  LRLENMLRYEKELYQQGYQAIAGIDEVGRGPLAGPVVTACVILPKNCKIKHLNDSKKIPK 111

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVI---PRSALID 121
              EE+Y++I + A+ I I    +  ID+ NI++AT   +  A+  L+ +   P   LID
Sbjct: 112 NHHEEIYQEILARALGIGIGIVDNNVIDQINIYEATKVGMLQAINQLKGVVTKPDYLLID 171

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
              +   +P Q+   IKGD+ SLSIAAASI+AKVTRDR+M      YP Y F+ +VGY T
Sbjct: 172 AMHLETSIPQQSL--IKGDANSLSIAAASIVAKVTRDRMMADYANDYPGYAFEKNVGYGT 229

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207
            +H + +K+ G + IHR TF P++++
Sbjct: 230 KEHLEGLKKYGITPIHRKTFEPIKSM 255


>gi|300920135|ref|ZP_07136586.1| ribonuclease HII [Escherichia coli MS 115-1]
 gi|300412832|gb|EFJ96142.1| ribonuclease HII [Escherichia coli MS 115-1]
          Length = 198

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 111/182 (60%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L E+I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  + AV+KGDS   
Sbjct: 72  RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSRVP 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFVQHKGYPTAFHLEKLAEHGATEHHRRSFGPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|294625960|ref|ZP_06704572.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|294666389|ref|ZP_06731635.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292599755|gb|EFF43880.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292603831|gb|EFF47236.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 248

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 81/182 (44%), Positives = 118/182 (64%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII-SI 83
           +AG+DE GRG LAGPV VAA++ DP      G++DSK+++ ++RE+LY +I   A+  S+
Sbjct: 37  IAGVDEAGRGPLAGPVAVAAVVFDPGKPRINGLDDSKQLTAERREQLYARIVDRALAWSV 96

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
                + ID+ NI++AT+  +  AVE +  +   A IDG  +P+ LPC A A+I GD++ 
Sbjct: 97  VLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALD 156

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I AASI+AKVTRDRLM   H ++P+Y FD H GY T  H   ++  GP   HR +F P
Sbjct: 157 RAIMAASIVAKVTRDRLMHELHARHPEYRFDQHKGYSTPVHLAALQTHGPCPQHRRSFAP 216

Query: 204 LR 205
           +R
Sbjct: 217 VR 218


>gi|21242160|ref|NP_641742.1| ribonuclease HII [Xanthomonas axonopodis pv. citri str. 306]
 gi|39932428|sp|Q8PML9|RNH2_XANAC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|21107575|gb|AAM36278.1| ribonuclease HII [Xanthomonas axonopodis pv. citri str. 306]
          Length = 244

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 81/182 (44%), Positives = 118/182 (64%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII-SI 83
           +AG+DE GRG LAGPV VAA++ DP      G++DSK+++ ++RE+LY +I   A+  S+
Sbjct: 33  IAGVDEAGRGPLAGPVAVAAVVFDPGKPRINGLDDSKQLTAERREQLYARIVDRALAWSV 92

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
                + ID+ NI++AT+  +  AVE +  +   A IDG  +P+ LPC A A+I GD++ 
Sbjct: 93  VLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALD 152

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I AASI+AKVTRDRLM   H ++P+Y FD H GY T  H   ++  GP   HR +F P
Sbjct: 153 RAIMAASIVAKVTRDRLMHELHTRHPEYRFDQHKGYSTPVHLAALQTHGPCPQHRRSFAP 212

Query: 204 LR 205
           +R
Sbjct: 213 VR 214


>gi|306833475|ref|ZP_07466602.1| ribonuclease HII [Streptococcus bovis ATCC 700338]
 gi|304424245|gb|EFM27384.1| ribonuclease HII [Streptococcus bovis ATCC 700338]
          Length = 259

 Score =  147 bits (372), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 90/206 (43%), Positives = 126/206 (61%), Gaps = 12/206 (5%)

Query: 12  FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
             LE M+R EK ++      +AGIDEVGRG LAGPVV A +IL  N     +NDSKKI  
Sbjct: 52  LRLENMLRYEKELYQQGYQAIAGIDEVGRGPLAGPVVTACVILPKNCKIKHLNDSKKIPK 111

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALID 121
           K  EE+Y++I + A+ I I    +  ID+ NI++AT   +  A+  L+     P   LID
Sbjct: 112 KHHEEIYQEILARALGIGIGIVDNNVIDQINIYEATKVGMLQAINQLKGEVTKPDYLLID 171

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
              +   +P Q+   +KGD+ SLSIAAASI+AKVTRDR+M      YP Y F+ +VGY T
Sbjct: 172 AMHLETSIPQQSL--LKGDANSLSIAAASIVAKVTRDRMMADYANDYPGYAFEKNVGYGT 229

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207
            +H + +K+ G + IHR TF P++++
Sbjct: 230 KEHLEGLKKYGITPIHRKTFEPIKSM 255


>gi|91209253|ref|YP_539239.1| ribonuclease HII [Escherichia coli UTI89]
 gi|117622468|ref|YP_851381.1| ribonuclease HII [Escherichia coli APEC O1]
 gi|218557124|ref|YP_002390037.1| ribonuclease HII [Escherichia coli S88]
 gi|237704342|ref|ZP_04534823.1| ribonuclease HII [Escherichia sp. 3_2_53FAA]
 gi|122424950|sp|Q1RG06|RNH2_ECOUT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166225184|sp|A1A7M7|RNH2_ECOK1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|226736817|sp|B7MBG4|RNH2_ECO45 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|91070827|gb|ABE05708.1| RNAse HII, degrades RNA of DNA-RNA hybrids [Escherichia coli UTI89]
 gi|115511592|gb|ABI99666.1| ribonuclease HII [Escherichia coli APEC O1]
 gi|218363893|emb|CAR01558.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           S88]
 gi|226902254|gb|EEH88513.1| ribonuclease HII [Escherichia sp. 3_2_53FAA]
 gi|294490169|gb|ADE88925.1| ribonuclease HII [Escherichia coli IHE3034]
 gi|307629759|gb|ADN74063.1| ribonuclease HII [Escherichia coli UM146]
 gi|315285250|gb|EFU44695.1| ribonuclease HII [Escherichia coli MS 110-3]
 gi|323950818|gb|EGB46695.1| ribonuclease HII [Escherichia coli H252]
 gi|323955144|gb|EGB50919.1| ribonuclease HII [Escherichia coli H263]
          Length = 198

 Score =  147 bits (372), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 111/182 (60%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L E+I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLVLCEEIKEKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  + AV+KGDS   
Sbjct: 72  RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSRVP 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|71275625|ref|ZP_00651910.1| Ribonuclease H [Xylella fastidiosa Dixon]
 gi|71899522|ref|ZP_00681679.1| Ribonuclease H [Xylella fastidiosa Ann-1]
 gi|170729566|ref|YP_001774999.1| ribonuclease HII [Xylella fastidiosa M12]
 gi|238687911|sp|B0U235|RNH2_XYLFM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|71163516|gb|EAO13233.1| Ribonuclease H [Xylella fastidiosa Dixon]
 gi|71730742|gb|EAO32816.1| Ribonuclease H [Xylella fastidiosa Ann-1]
 gi|167964359|gb|ACA11369.1| Ribonuclease H [Xylella fastidiosa M12]
          Length = 234

 Score =  147 bits (372), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 89/191 (46%), Positives = 118/191 (61%), Gaps = 8/191 (4%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSA- 79
           N   VAG+DE GRG LAGPVVVAA++ DP+     G+NDSK++S   RE LY  I   A 
Sbjct: 14  NTALVAGVDEAGRGPLAGPVVVAAVVFDPSQPRINGLNDSKQLSPACRERLYAHIVERAL 73

Query: 80  ---IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136
              ++ I S     ID  NI++AT+  +  AVE +  + +SA IDG  +P++LPC A A+
Sbjct: 74  AYKVVMIDSTQ---IDTLNIYQATMLGMRLAVEGVAHVAKSARIDGNRLPKNLPCPAEAL 130

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           + GD+   +I AASI+AKVTRDR M   H +YP YGFD H GY T  H   + E GP   
Sbjct: 131 VGGDARDPTIMAASILAKVTRDRHMVELHLQYPHYGFDKHKGYGTPAHLAALAEHGPCLE 190

Query: 197 HRLTFRPLRNL 207
           HR +F P+R +
Sbjct: 191 HRQSFAPVRRM 201


>gi|316932574|ref|YP_004107556.1| ribonuclease H [Rhodopseudomonas palustris DX-1]
 gi|315600288|gb|ADU42823.1| Ribonuclease H [Rhodopseudomonas palustris DX-1]
          Length = 299

 Score =  147 bits (372), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 89/195 (45%), Positives = 124/195 (63%), Gaps = 1/195 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E  + ++ +WPVAG DE GRG LAGPVV AA++LDP  IP G++DSK++S +KRE
Sbjct: 77  PSFRRERALIKRGIWPVAGCDEAGRGPLAGPVVAAAVVLDPKRIPKGLDDSKRLSAEKRE 136

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L+E+I ++A +++  AS + I++ NI +A+L A+  AV  L  +P+   +DGR      
Sbjct: 137 ALFEEICATAQVAVVYASPERINRDNILRASLWALTRAVHALPELPKQVFVDGRDRLATR 196

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C   AVI GD +  SIAAASIIAKV+RDRLM    ++ P YGF+ H GY    H   + 
Sbjct: 197 -CDCEAVIGGDGLIASIAAASIIAKVSRDRLMCRLAEQCPGYGFEQHKGYGVPDHLDALA 255

Query: 190 EKGPSCIHRLTFRPL 204
             GP+  HR  F P+
Sbjct: 256 RLGPTVHHRRAFAPV 270


>gi|237747799|ref|ZP_04578279.1| ribonuclease HII [Oxalobacter formigenes OXCC13]
 gi|229379161|gb|EEO29252.1| ribonuclease HII [Oxalobacter formigenes OXCC13]
          Length = 219

 Score =  147 bits (372), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 82/181 (45%), Positives = 117/181 (64%), Gaps = 2/181 (1%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSA 86
           G DE GRG +AGPV  AA+ILDP++   G+ DSKK+S  +R+EL  +I   A   +I+  
Sbjct: 32  GADEAGRGPIAGPVFAAAVILDPDHPIAGLKDSKKLSEHRRDELALEIKQYARAWAIAEC 91

Query: 87  SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSI 146
           S + ID+ NI  A++ A+  A+E+L + P  ALIDG   P+ L   A A++KGD    +I
Sbjct: 92  SIEEIDELNILHASMLAMKRAIESLAIRPELALIDGNRCPK-LAIAAKAIVKGDDKVPAI 150

Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           +AASI+AK  RD +M   H++YP+YGFD H GYPTA H + +   G S +HR T+ P+R 
Sbjct: 151 SAASILAKTARDAVMLDLHRQYPEYGFDRHKGYPTAYHLEQLSIHGVSPVHRKTYAPVRK 210

Query: 207 L 207
           +
Sbjct: 211 I 211


>gi|332184412|gb|AEE26666.1| Ribonuclease HII [Francisella cf. novicida 3523]
          Length = 185

 Score =  147 bits (372), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 86/186 (46%), Positives = 121/186 (65%), Gaps = 8/186 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA----II 81
           + GIDE GRG L+GPVV A ++LDPN I  G+ DSKK++ KKR+ LY++I S A    I+
Sbjct: 3   ILGIDEAGRGPLSGPVVAAGVVLDPNIIIDGLADSKKLTEKKRQSLYQQIISHAKAYTIV 62

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
            ISS  HQ ID+ NI +ATL A++   +NL+      L+DG  +P +    + A++KGDS
Sbjct: 63  EISS--HQ-IDELNILQATLKAMHQVADNLKGQFDKILVDGNKLP-NWNYNSEAIVKGDS 118

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             L I+AASI+AKV RD +     + YP YGF  H GYPT +H + IK+ G   IHR ++
Sbjct: 119 KILEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSY 178

Query: 202 RPLRNL 207
           +P++ L
Sbjct: 179 KPVQIL 184


>gi|238784894|ref|ZP_04628894.1| Ribonuclease HII [Yersinia bercovieri ATCC 43970]
 gi|238714211|gb|EEQ06223.1| Ribonuclease HII [Yersinia bercovieri ATCC 43970]
          Length = 183

 Score =  147 bits (371), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 83/180 (46%), Positives = 112/180 (62%), Gaps = 2/180 (1%)

Query: 29  IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSAS 87
           +DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++IT  A+  S+  A 
Sbjct: 1   MDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEITDKALSWSLGRAE 60

Query: 88  HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147
            + ID+ NI  AT+ A+  AV  L + P   LIDG   P+ L   + AV+KGDS    I+
Sbjct: 61  PEEIDRLNILHATMLAMQRAVAGLHITPDYVLIDGNRCPK-LAMPSLAVVKGDSRVAEIS 119

Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           AASI+AKVTRDR M    + +P+YGF  H GYPTA H + +   G +  HR +F P++ +
Sbjct: 120 AASILAKVTRDREMTELDRHFPEYGFAQHKGYPTAVHLEKLSAFGATEHHRRSFGPVKRV 179


>gi|171463285|ref|YP_001797398.1| Ribonuclease H [Polynucleobacter necessarius subsp. necessarius
           STIR1]
 gi|238689054|sp|B1XTV7|RNH2_POLNS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|171192823|gb|ACB43784.1| Ribonuclease H [Polynucleobacter necessarius subsp. necessarius
           STIR1]
          Length = 197

 Score =  147 bits (371), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 89/189 (47%), Positives = 118/189 (62%), Gaps = 7/189 (3%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-II 81
           +W V G+DE GRG L G VV  A++LDPNN   G+ DSKK++  +RE LYE+I   A   
Sbjct: 4   IW-VCGVDEAGRGPLVGAVVAGAVVLDPNNPIEGLKDSKKLTAARREYLYEQIMEKAKAW 62

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQV----IPRSALIDGRSIPEDLPCQAFAVI 137
            +  AS   ID+ NI +AT+ A+  A+E+L       P  ALIDG   PE LP  A A+I
Sbjct: 63  GVGEASPTEIDEINILQATMLAMRRAIEDLATRLGAWPDKALIDGNRCPE-LPIAAEAII 121

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGD+   +I+AASI+AKVTRDR M   H+++P+YGF  H+GYPT  H   +K+ G    H
Sbjct: 122 KGDTKEPAISAASIVAKVTRDRQMMSLHERHPEYGFAQHMGYPTEAHFAALKQYGACDQH 181

Query: 198 RLTFRPLRN 206
           R  F P+R 
Sbjct: 182 RRCFSPVRK 190


>gi|73666806|ref|YP_302822.1| ribonuclease H [Ehrlichia canis str. Jake]
 gi|97182460|sp|Q3YST1|RNH2_EHRCJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|72393947|gb|AAZ68224.1| Ribonuclease H [Ehrlichia canis str. Jake]
          Length = 209

 Score =  147 bits (371), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 87/194 (44%), Positives = 118/194 (60%), Gaps = 4/194 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAA--IILDPNNIPFGINDSKKISHKKREE 70
           E+   + +KN   + G+DEVG G+LAGPVV AA   +   N I + I DSKK++ KKR E
Sbjct: 9   EISKSINKKNC-IIVGVDEVGYGSLAGPVVSAASFFLRHDNEIIYNIKDSKKLTPKKRIE 67

Query: 71  LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +Y  ITS    SI  A    ID+HNI  AT  A+  A+  L       ++DG  +P DLP
Sbjct: 68  VYNTITSIVKWSIGFADVYEIDQHNILNATHLAMQRALNGLNCDIDYVIVDGNKVP-DLP 126

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               A++ GD+IS+SIAAASIIAKVTRD+LM   H +YP+Y ++ + GY T  H + + +
Sbjct: 127 WNRKAIVDGDNISVSIAAASIIAKVTRDKLMETLHTQYPEYQWNKNKGYGTKHHLESLYK 186

Query: 191 KGPSCIHRLTFRPL 204
            G +  HR TF PL
Sbjct: 187 YGKTIHHRNTFAPL 200


>gi|28198242|ref|NP_778556.1| ribonuclease HII [Xylella fastidiosa Temecula1]
 gi|182680879|ref|YP_001829039.1| ribonuclease HII [Xylella fastidiosa M23]
 gi|32129977|sp|Q87EI6|RNH2_XYLFT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238691079|sp|B2I7N7|RNH2_XYLF2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|28056312|gb|AAO28205.1| ribonuclease HII [Xylella fastidiosa Temecula1]
 gi|182630989|gb|ACB91765.1| Ribonuclease H [Xylella fastidiosa M23]
 gi|307579347|gb|ADN63316.1| ribonuclease HII [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 234

 Score =  147 bits (371), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 89/191 (46%), Positives = 118/191 (61%), Gaps = 8/191 (4%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSA- 79
           N   VAG+DE GRG LAGPVVVAA++ DP+     G+NDSK++S   RE LY  I   A 
Sbjct: 14  NTALVAGVDEAGRGPLAGPVVVAAVVFDPSQPHINGLNDSKQLSPACRERLYAHIVERAL 73

Query: 80  ---IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136
              ++ I S     ID  NI++AT+  +  AVE +  + +SA IDG  +P++LPC A A+
Sbjct: 74  AYKVVMIDSTQ---IDTLNIYQATMLGMRLAVEGVAHVAKSARIDGNRLPKNLPCPAEAL 130

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           + GD+   +I AASI+AKVTRDR M   H +YP YGFD H GY T  H   + E GP   
Sbjct: 131 VGGDARDPTIMAASILAKVTRDRHMVELHLQYPHYGFDKHKGYGTPAHLAALAEHGPCLE 190

Query: 197 HRLTFRPLRNL 207
           HR +F P+R +
Sbjct: 191 HRQSFAPVRRM 201


>gi|110801760|ref|YP_698993.1| ribonuclease HII [Clostridium perfringens SM101]
 gi|123047313|sp|Q0SSB4|RNH2_CLOPS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|110682261|gb|ABG85631.1| ribonuclease HII [Clostridium perfringens SM101]
          Length = 272

 Score =  147 bits (371), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 97/221 (43%), Positives = 125/221 (56%), Gaps = 21/221 (9%)

Query: 5   SIPERPHFELEAMVRE----KNMW----------PVAGIDEVGRGALAGPVVVAAIILDP 50
           S+  R    L  +++E    KNM+           VAG+DEVGRG LAGP+V AA+ILD 
Sbjct: 54  SLGNRLEKNLNNLIKEEERVKNMYFFDKSFGDYKYVAGVDEVGRGPLAGPIVSAAVILDS 113

Query: 51  NN---IPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYH 106
           +N   I   INDSKK+S  KREEL E I   A+  SIS    + ID+  I          
Sbjct: 114 SNLDDIILYINDSKKLSEHKREELSEIIKEKALSYSISMCDSKEIDEKGIGYCNNHVFIK 173

Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166
           A E L + P   L DG  I ++   +   VIKGD+ S  IA ASIIAKV RD +M+  HK
Sbjct: 174 ACEGLNIKPDLVLSDGYLI-KNFNGENKHVIKGDTKSACIACASIIAKVYRDNIMKEYHK 232

Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           KYP Y F+ +VGY T  H   +KE GP+ IHR++F  L+N+
Sbjct: 233 KYPQYDFEKNVGYGTKTHVDALKEVGPTEIHRMSF--LKNI 271


>gi|315658466|ref|ZP_07911338.1| ribonuclease HII [Staphylococcus lugdunensis M23590]
 gi|315496795|gb|EFU85118.1| ribonuclease HII [Staphylococcus lugdunensis M23590]
          Length = 255

 Score =  147 bits (371), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 86/185 (46%), Positives = 117/185 (63%), Gaps = 7/185 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA---IIS 82
           + GIDEVGRG LAGPVV  A+IL+ N+   G+NDSKK+S   R +L + +  +       
Sbjct: 74  ICGIDEVGRGPLAGPVVACAVILNANHHYLGLNDSKKVSAVNRAQLNQDLMDNVRGYAYG 133

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+SA+   ID+ NI++AT  A+  A+  LQV P   LID  SI  D      A+IKGD+ 
Sbjct: 134 IASAAE--IDQLNIYRATQVAMQRAINQLQVRPTHLLIDAMSI--DSTISQTAIIKGDAK 189

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           S+SIAAASI+AK  RD LMR   + YP YGFD +VGY T  H   +++ G + IHR TF 
Sbjct: 190 SVSIAAASIMAKEYRDHLMRDYAQVYPHYGFDKNVGYGTKAHLAGLEQYGVTPIHRRTFE 249

Query: 203 PLRNL 207
           P++++
Sbjct: 250 PVKSM 254


>gi|289675278|ref|ZP_06496168.1| ribonuclease HII [Pseudomonas syringae pv. syringae FF5]
          Length = 198

 Score =  147 bits (371), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 82/175 (46%), Positives = 109/175 (62%), Gaps = 2/175 (1%)

Query: 32  VGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-ISSASHQY 90
           +GRG L G VV AA+ILDP     G+NDSKK++  +RE+L+ +I   A+   I+ A  + 
Sbjct: 1   MGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKLFVEIQEKALCWFIARAEVEE 60

Query: 91  IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAAS 150
           ID+ NI  AT+ A+  AVE L + PR ALIDG   P+ L   +  V+KGDS   +IAAAS
Sbjct: 61  IDQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQ-LSVPSAPVVKGDSKVPAIAAAS 119

Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P+R
Sbjct: 120 ILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPVR 174


>gi|300776110|ref|ZP_07085969.1| ribonuclease H [Chryseobacterium gleum ATCC 35910]
 gi|300505243|gb|EFK36382.1| ribonuclease H [Chryseobacterium gleum ATCC 35910]
          Length = 194

 Score =  147 bits (371), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 122/192 (63%), Gaps = 5/192 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
           +E +    N++  AG DEVGRG L+GPVV AA+ILD       +NDSKK++ K R EL  
Sbjct: 1   MELIKNWSNLYIEAGCDEVGRGCLSGPVVAAAVILDEGFEQNLVNDSKKLTFKTRMELDS 60

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-PED-LP 130
            I  +    +I+     +ID+HNI  A++ A++ A++ L + P   L+DG    P + +P
Sbjct: 61  YIKDNVKNYAIAELPASFIDEHNILNASIHAMHRALDKLTITPELILVDGNKFHPYNYIP 120

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            Q   +IKGDS  LSIAAASI+AK  RD+LM   H+++P+YG+D++ GY T KHQ+ + +
Sbjct: 121 HQC--IIKGDSKVLSIAAASILAKNYRDKLMMQLHEEHPEYGWDTNFGYATKKHQEALIK 178

Query: 191 KGPSCIHRLTFR 202
            GP+  HR +FR
Sbjct: 179 HGPTIYHRQSFR 190


>gi|121608424|ref|YP_996231.1| ribonuclease HII [Verminephrobacter eiseniae EF01-2]
 gi|189043674|sp|A1WHV6|RNH2_VEREI RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|121553064|gb|ABM57213.1| Ribonuclease H [Verminephrobacter eiseniae EF01-2]
          Length = 209

 Score =  147 bits (371), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 80/181 (44%), Positives = 115/181 (63%), Gaps = 4/181 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DE GRG LAGPV+ AA++LD      G+ DSKK++  +R  L+++I + A+  SI+
Sbjct: 22  VAGVDEAGRGPLAGPVMAAAVMLDERQPIMGLADSKKLTPARRASLFDEIRAKALCYSIA 81

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            AS Q ID  NI +ATL A+  AV+ L++ P   L+DG  +P  D+P QA  ++KGD++ 
Sbjct: 82  QASVQEIDALNILQATLLAMRRAVQGLRLRPALVLVDGNRLPRLDIPAQA--IVKGDALQ 139

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AKV RD      H ++P YGF  H GY TA H   ++  G    HR +F P
Sbjct: 140 PAISAASILAKVQRDHWCVQVHAEFPQYGFAGHKGYGTAMHLAALRAHGACIHHRRSFAP 199

Query: 204 L 204
           +
Sbjct: 200 V 200


>gi|58584899|ref|YP_198472.1| ribonuclease HII [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|73917838|sp|Q5GRZ4|RNH2_WOLTR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|58419215|gb|AAW71230.1| Ribonuclease HII [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 203

 Score =  147 bits (371), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 87/198 (43%), Positives = 120/198 (60%), Gaps = 6/198 (3%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKR 68
           P F LE     K    +AG+DEVGRG LAGPV+ AA++    NI   GINDSKK++ K R
Sbjct: 4   PDFTLE----NKLSGVIAGVDEVGRGPLAGPVMSAAVVFTNRNIIIEGINDSKKLTAKNR 59

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           + LYEKI S A   I  AS   I+ +NI +AT  ++  A+ NL +     L+DG   P  
Sbjct: 60  QVLYEKIISVAKFGIGMASVAEINSYNILQATKLSMERALVNLGIELDYVLVDGNQ-PPK 118

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           +  Q  +++KGDS+S+S+AAASI+AKV RD+LM+  H +YP+Y +  + GY T  H   I
Sbjct: 119 VKWQVKSIVKGDSLSVSVAAASIVAKVARDQLMQELHNQYPEYNWYKNKGYGTKGHIDAI 178

Query: 189 KEKGPSCIHRLTFRPLRN 206
              G +  HR +F P+ N
Sbjct: 179 NLYGVTEHHRKSFAPILN 196


>gi|306821648|ref|ZP_07455246.1| ribonuclease HII [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304550393|gb|EFM38386.1| ribonuclease HII [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 263

 Score =  147 bits (371), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 90/198 (45%), Positives = 120/198 (60%), Gaps = 4/198 (2%)

Query: 12  FELEAMVRE-KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           +E E  +RE +N   +  IDEVGRG LAGP+VV  ++LD N     ++DSKK+S KKR+E
Sbjct: 67  YEYEKNIRESENKQNILCIDEVGRGPLAGPLVVCGVMLDENPEILYVDDSKKLSEKKRKE 126

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           ++E+I    I   I +     ID+ NI  AT  A+ H  +N  V     L+DG  I +D+
Sbjct: 127 IFEQIMQKNIRYEIMTVEVDKIDELNIFNATYRAMSHIAKNFPVKIDHILVDGNQILKDV 186

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                AVIKGDS  L IA ASIIAKVTRD +M    K YP Y F S+ GY T+KH + IK
Sbjct: 187 NIDQTAVIKGDSKVLGIAIASIIAKVTRDAMMIDYDKIYPMYDFASNKGYGTSKHIEGIK 246

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + G   IHR++F  L+N+
Sbjct: 247 KYGTCPIHRMSF--LKNI 262


>gi|261408005|ref|YP_003244246.1| Ribonuclease H [Paenibacillus sp. Y412MC10]
 gi|329924283|ref|ZP_08279438.1| ribonuclease HII [Paenibacillus sp. HGF5]
 gi|261284468|gb|ACX66439.1| Ribonuclease H [Paenibacillus sp. Y412MC10]
 gi|328940765|gb|EGG37080.1| ribonuclease HII [Paenibacillus sp. HGF5]
          Length = 205

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/199 (43%), Positives = 123/199 (61%), Gaps = 10/199 (5%)

Query: 17  MVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           ++ E+  W     +AGIDEVGRG L G VV AA+I+    +  GINDSKK+S KKRE LY
Sbjct: 5   LMYEREYWSRYIHIAGIDEVGRGCLFGDVVAAAVIMPEGLVIEGINDSKKLSAKKRETLY 64

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           + I   A+ + +     + ID+ NI +A   A+  A+E L V P+  L+D   +  D+P 
Sbjct: 65  DLIMEQALAVGVGLVDAETIDRINIKQAARLAMKKAIEQLAVPPQFLLVDAEKVDCDIPQ 124

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK-KYPDYGFDSHVGYPTAKHQQVIKE 190
           +  A+IKGD+ S SI AASIIAKVTRDRL     + +YP+YG   H GY T  H++ ++ 
Sbjct: 125 R--AIIKGDANSQSIGAASIIAKVTRDRLCEGEWEARYPEYGIAVHKGYATKFHREQLQL 182

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            GP+ +HR +F  L+N+ +
Sbjct: 183 HGPTAMHRRSF--LKNMEI 199


>gi|192289636|ref|YP_001990241.1| ribonuclease HII [Rhodopseudomonas palustris TIE-1]
 gi|238692592|sp|B3QHK8|RNH2_RHOPT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|192283385|gb|ACE99765.1| Ribonuclease H [Rhodopseudomonas palustris TIE-1]
          Length = 281

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/195 (45%), Positives = 125/195 (64%), Gaps = 1/195 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E  + ++ +WP+AG DE GRG LAGPVV AA++LDP  +P G++DSK++S +KRE
Sbjct: 59  PSFRRERALIKRGIWPIAGCDEAGRGPLAGPVVAAAVVLDPKRVPKGLDDSKRLSAEKRE 118

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L+E+I ++A +S+  AS + I++ NI +A+L A+  AV  L  +PR   +DGR      
Sbjct: 119 ALFEEICATAQVSVVYASPERINRDNILRASLWALTRAVHALPDLPRHVFVDGRDR-LAT 177

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C   AVI GD +  SIAAASIIAKV+RDRLM    ++ P YGF+ H GY   +H   + 
Sbjct: 178 KCDCEAVIGGDGLIASIAAASIIAKVSRDRLMCKLAEQCPGYGFEQHKGYGVPEHLDALA 237

Query: 190 EKGPSCIHRLTFRPL 204
             GP+  HR  F P+
Sbjct: 238 RLGPTVHHRRFFAPV 252


>gi|317406254|gb|EFV86498.1| ribonuclease HII [Achromobacter xylosoxidans C54]
          Length = 202

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/186 (45%), Positives = 114/186 (61%), Gaps = 4/186 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
            AG+DE GRG LAG V  AA+ILDP     G+ DSK +    RE L  +I + A+   ++
Sbjct: 17  TAGVDEAGRGPLAGAVYAAAVILDPARPIDGLADSKVLKAATREALALEIQAHALAWCVA 76

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS   ID  NI +ATL A+  AVE L + P+ AL+DG   P+ L C    VIKGD++  
Sbjct: 77  SASVAEIDSLNILRATLLAMRRAVEGLSLAPQLALVDGNQAPK-LGCTVQTVIKGDALVP 135

Query: 145 SIAAASIIAKVTRDR-LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           +I+AASI+AK  RD  L+R+ H  YP Y FD H GY TA H Q+++E GP   HR +F P
Sbjct: 136 AISAASILAKTARDADLLRL-HSLYPQYAFDQHKGYGTALHLQMLREHGPCAEHRRSFAP 194

Query: 204 LRNLSV 209
           ++   +
Sbjct: 195 IKAFGL 200


>gi|197303275|ref|ZP_03168316.1| hypothetical protein RUMLAC_01998 [Ruminococcus lactaris ATCC
           29176]
 gi|197297701|gb|EDY32260.1| hypothetical protein RUMLAC_01998 [Ruminococcus lactaris ATCC
           29176]
          Length = 252

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/177 (49%), Positives = 112/177 (63%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84
           + GIDE GRG LAGPVV  A+IL  +     +NDSKK+S  +REELY++I   A+ + I 
Sbjct: 72  ICGIDEAGRGPLAGPVVAGAVILPADCEILYLNDSKKLSAARREELYDEIMEKAVATGIG 131

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID+ NI +AT +A+  AV  L   P   L D  +IPE +      +IKGD+ S+
Sbjct: 132 MASPARIDEINILQATYEAMREAVSKLSREPDLLLNDAVTIPE-MTIMQVPIIKGDAKSV 190

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SIAAASI+AKVTRDRLM    K  P+YGF  H GY + +H   I++ GPS IHR TF
Sbjct: 191 SIAAASILAKVTRDRLMIEYDKILPEYGFAGHKGYGSKEHIAAIQKYGPSPIHRRTF 247


>gi|114776989|ref|ZP_01452009.1| ribonuclease HII [Mariprofundus ferrooxydans PV-1]
 gi|114552510|gb|EAU54970.1| ribonuclease HII [Mariprofundus ferrooxydans PV-1]
          Length = 185

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/184 (46%), Positives = 114/184 (61%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAI-ISI 83
           +AG+DEVGRG LAGPVV AA+IL P++   G   DSKK++ KKR +LY  I   A+  ++
Sbjct: 2   LAGVDEVGRGPLAGPVVTAAVILSPDDPYLGQYRDSKKVAEKKRLKLYHHIRKHAVAYTV 61

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A+ + ID  NI  AT+ ++  +VE L V P   ++DG  IP DL   A A+I GD + 
Sbjct: 62  TMATVEEIDHLNILHATMLSMRRSVEGLAVRPVRVVVDGNRIP-DLTMPAEAIIGGDDLV 120

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             IAAASIIAKV RDRLM +   ++P Y F  H GY T  H   ++E GP   HR +F P
Sbjct: 121 QEIAAASIIAKVVRDRLMAMLDVRHPGYQFTKHKGYGTKVHMDALREHGPCPAHRRSFAP 180

Query: 204 LRNL 207
           +  L
Sbjct: 181 VTKL 184


>gi|56964049|ref|YP_175780.1| ribonuclease HII [Bacillus clausii KSM-K16]
 gi|73917599|sp|Q5WFP1|RNH2_BACSK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|56910292|dbj|BAD64819.1| ribonuclease HII [Bacillus clausii KSM-K16]
          Length = 259

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/194 (42%), Positives = 117/194 (60%), Gaps = 3/194 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +  E  ++++    V G+DEVGRG LAGPV   A IL  +    G+ DSKK+S  KREE 
Sbjct: 57  WRYEQELKQRGYVAVCGVDEVGRGPLAGPVTACACILPDDFQLLGLTDSKKLSKAKREEY 116

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            + I+  A+  SI+S S   ID+ NI +AT  A+  A+  L       L+D  ++  D+P
Sbjct: 117 AKMISEQAVAYSIASVSAAEIDEINILQATKKAMTKAINGLSQKTDHLLLD--AVRLDVP 174

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAA+S++AKV RDR M    + YP YGFD+H GY TA H Q ++ 
Sbjct: 175 IAQTSLIKGDAKSLSIAASSVLAKVWRDRYMEELAQTYPGYGFDTHAGYGTASHLQALRT 234

Query: 191 KGPSCIHRLTFRPL 204
            G +  HR +FRP+
Sbjct: 235 YGMTPEHRKSFRPV 248


>gi|154250014|ref|YP_001410839.1| ribonuclease HII [Fervidobacterium nodosum Rt17-B1]
 gi|154153950|gb|ABS61182.1| Ribonuclease H [Fervidobacterium nodosum Rt17-B1]
          Length = 245

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/189 (42%), Positives = 115/189 (60%), Gaps = 7/189 (3%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
           + + G+DE GRG + GPVV AA+  D      GI DSKK+S  KREELYEKI+ SA   I
Sbjct: 9   YSIIGVDEAGRGPIFGPVVAAAVFFDEGIYIEGITDSKKLSESKREELYEKISFSAKFGI 68

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVI-----PRSALIDGRSIPEDLPCQAFAVIK 138
             A+   ID +NI  AT  A+  A+E L         ++  +DG+ +  + P +   ++K
Sbjct: 69  GIATPDEIDVYNILHATELAMNRALEILSYYIKIDEGKNIYVDGKDLRLNFPSK--CIVK 126

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD     I+AASI+AKVTRDR+M+   K++P+Y    H GY T++H +++K+ GP+  HR
Sbjct: 127 GDEKVYQISAASILAKVTRDRIMKKFDKEFPEYNLSKHKGYATSEHIELLKKYGPTPYHR 186

Query: 199 LTFRPLRNL 207
           LTF P+  L
Sbjct: 187 LTFDPVFQL 195


>gi|225025287|ref|ZP_03714479.1| hypothetical protein EIKCOROL_02184 [Eikenella corrodens ATCC
           23834]
 gi|224941905|gb|EEG23114.1| hypothetical protein EIKCOROL_02184 [Eikenella corrodens ATCC
           23834]
          Length = 194

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/183 (43%), Positives = 113/183 (61%), Gaps = 3/183 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISIS 84
           AG+DE GRG L G V  AA++L PN     G+ DSKK+S ++R+EL   I   A+   ++
Sbjct: 5   AGVDEAGRGPLVGSVFAAAVVL-PNEYDLPGLTDSKKLSERRRDELAVLIKQQALAWCVA 63

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           +AS + ID+ NI  AT+ A+  AV  L+ +P    IDG  +P DL C+A AVIKGDS  +
Sbjct: 64  AASVEEIDRLNILHATMLAMRRAVHGLERLPEKVWIDGNRVPPDLGCEAEAVIKGDSKII 123

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AAS++AK  RD  M    ++YP YGF+ H GY TA+H   ++  G    HR +F P+
Sbjct: 124 QISAASVLAKTARDAEMYALAERYPQYGFERHKGYGTAEHLAALQRHGALPEHRRSFAPV 183

Query: 205 RNL 207
           R +
Sbjct: 184 REI 186


>gi|325661112|ref|ZP_08149739.1| hypothetical protein HMPREF0490_00472 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472619|gb|EGC75830.1| hypothetical protein HMPREF0490_00472 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 254

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/194 (46%), Positives = 121/194 (62%), Gaps = 6/194 (3%)

Query: 14  LEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           +EAM   +N +     + GIDEVGRG LAGPVV  A+IL  ++    +NDSKK++ K+RE
Sbjct: 56  IEAMKSYENKYRDAAFICGIDEVGRGPLAGPVVAGAVILPKDSQILYLNDSKKLTEKRRE 115

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           ELYE I   AI + I   S   ID+ NI +AT +A+  AV  L V P   L D  +IP  
Sbjct: 116 ELYEVIMREAIAVGIGIVSPARIDEINILQATYEAMREAVGKLCVEPNVLLNDAVTIPMI 175

Query: 129 LP-CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            P      +IKGD+ S+SIAAASI+AKVTRDRLM    +  P YGF S+ GY +++H   
Sbjct: 176 PPHIVQVPIIKGDAKSVSIAAASIVAKVTRDRLMTEYEEVLPGYGFASNKGYGSSEHIAA 235

Query: 188 IKEKGPSCIHRLTF 201
           +K+ GP+ IHR +F
Sbjct: 236 LKKYGPTPIHRRSF 249


>gi|241764771|ref|ZP_04762780.1| Ribonuclease H [Acidovorax delafieldii 2AN]
 gi|241365761|gb|EER60433.1| Ribonuclease H [Acidovorax delafieldii 2AN]
          Length = 205

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/181 (46%), Positives = 118/181 (65%), Gaps = 4/181 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DE GRG LAGPVV AA+ILD  N   G+ DSKK++  +RE L+++I + A+  SI+
Sbjct: 22  VAGVDEAGRGPLAGPVVAAAVILDDLNPIAGLADSKKLTAARREALFDEIRAKALCCSIA 81

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            AS + ID+ NI +ATL A+  AV  L++ P  A++DG  +P  D+P  A A++ GD++ 
Sbjct: 82  EASVEEIDRLNILQATLLAMRRAVMGLRLKPVRAVVDGNRLPLLDMP--ADAIVNGDALV 139

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AKV RDR      + +P YGF  H GY TA H   ++E G    HR TF P
Sbjct: 140 PAISAASILAKVHRDRWCVQIDEHFPQYGFAGHKGYGTAVHMAALREHGACVHHRRTFAP 199

Query: 204 L 204
           +
Sbjct: 200 V 200


>gi|228476746|ref|ZP_04061412.1| ribonuclease HII [Streptococcus salivarius SK126]
 gi|228251617|gb|EEK10718.1| ribonuclease HII [Streptococcus salivarius SK126]
          Length = 255

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 126/201 (62%), Gaps = 9/201 (4%)

Query: 14  LEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           LE M+  EK+++      +AG+DEVGRG LAGPVV AA+IL       G+NDSKKI   K
Sbjct: 54  LEMMLSYEKSLYTQGVELIAGVDEVGRGPLAGPVVAAAVILPKFCKIKGLNDSKKIPKSK 113

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
            E +Y+++   A+ + I    +  ID  NI++AT  A+  A+E L+  P   LID  ++ 
Sbjct: 114 HEAIYKQVMKEAVAVGIGIKDNHVIDDVNIYEATKLAMVEAIEKLEPQPEHLLIDAMTL- 172

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            DLP    ++IKGD+ SLSIAAASI+AKVTRD++M    +++P Y F  + GY T +H  
Sbjct: 173 -DLPIGQTSIIKGDANSLSIAAASIVAKVTRDKMMADYEQEFPGYAFAKNAGYGTKEHLS 231

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G + IHR +F P++++
Sbjct: 232 GIDKFGVTPIHRRSFEPIKSI 252


>gi|325929586|ref|ZP_08190700.1| RNase HII [Xanthomonas perforans 91-118]
 gi|325540096|gb|EGD11724.1| RNase HII [Xanthomonas perforans 91-118]
          Length = 245

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/182 (44%), Positives = 118/182 (64%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII-SI 83
           +AG+DE GRG LAGPV VAA++ DP      G++DSK+++ ++RE+LY +I   A+  S+
Sbjct: 37  IAGVDEAGRGPLAGPVAVAAVVFDPGKPRINGLDDSKQLTAERREQLYARIVDRALAWSV 96

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
                + ID+ NI++AT+  +  AVE +  +   A IDG  +P+ LPC A A+I GD++ 
Sbjct: 97  VLIHSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALD 156

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I AASI+AKVTRDRLM   H ++P+Y FD H GY T  H   ++  GP   HR +F P
Sbjct: 157 RAIMAASIVAKVTRDRLMYELHTRHPEYRFDQHKGYSTPVHLAALQTHGPCPQHRRSFAP 216

Query: 204 LR 205
           +R
Sbjct: 217 VR 218


>gi|164688555|ref|ZP_02212583.1| hypothetical protein CLOBAR_02200 [Clostridium bartlettii DSM
           16795]
 gi|164602968|gb|EDQ96433.1| hypothetical protein CLOBAR_02200 [Clostridium bartlettii DSM
           16795]
          Length = 255

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/184 (45%), Positives = 118/184 (64%), Gaps = 6/184 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAI-ISI 83
           + G+DE GRG LAGPVV + ++ +    IP+ INDSKK+S  KREEL++ I   A+   I
Sbjct: 75  IGGVDEAGRGPLAGPVVASVVVFEKGTKIPY-INDSKKLSEAKREELFDIIKEQALDYGI 133

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
               ++ ID++NI  AT  A+  A+  L+  P   L+D  +IP DL  + F +IKGD+ S
Sbjct: 134 GIVDNEEIDEYNILNATYMAMNKALNALKKKPDYLLLDAVTIP-DLDIKQFPIIKGDAKS 192

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           +SIA ASI+AKVTRDRLM    + YP YGF  H GY T +H + I++ G + IHR +F  
Sbjct: 193 ISIAGASILAKVTRDRLMYKYDEIYPQYGFKHHKGYGTKEHYEAIEKYGITPIHRKSF-- 250

Query: 204 LRNL 207
           L+N+
Sbjct: 251 LKNV 254


>gi|300311507|ref|YP_003775599.1| ribonuclease HII protein [Herbaspirillum seropedicae SmR1]
 gi|300074292|gb|ADJ63691.1| ribonuclease HII protein [Herbaspirillum seropedicae SmR1]
          Length = 210

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/183 (42%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           + G+DE GRG LAGPV  AA+ILDP     G+ DSKK++   R+ L  +I +SA+  +++
Sbjct: 20  ICGVDEAGRGPLAGPVFAAAVILDPARPVKGLRDSKKLTEAARDSLALEIKASALAWAVA 79

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           S + Q ID+ NI  A++ A+  AVE L  +P  ALIDG   P  +  ++ A++KGD    
Sbjct: 80  SCNEQEIDELNILHASMLAMRRAVEALSTLPTLALIDGNRCPV-MSIRSEAIVKGDDKVP 138

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AK  RD  + + H  YP YGFD H GYPT  H ++++  G S +HR ++ P+
Sbjct: 139 AISAASILAKTARDAALMVLHDTYPHYGFDRHKGYPTPLHLEMLRLHGVSPVHRRSYAPV 198

Query: 205 RNL 207
           + L
Sbjct: 199 KAL 201


>gi|88706742|ref|ZP_01104444.1| Ribonuclease HII [Congregibacter litoralis KT71]
 gi|88699063|gb|EAQ96180.1| Ribonuclease HII [Congregibacter litoralis KT71]
          Length = 204

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/181 (47%), Positives = 117/181 (64%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + G+DEVGRG LAG VV AA +LDP N   G+ DSKK++ K+RE L E++ + A  I++ 
Sbjct: 19  IVGVDEVGRGPLAGDVVAAAAVLDPANPIVGLTDSKKLTAKRREVLREELLTRARGIALG 78

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID  NI +A+L A++ AV+ L + P   L+DGR +P      + AV+KGD+   
Sbjct: 79  RASPVEIDTLNILQASLLAMWRAVDALGLEPDLVLVDGRQLPS-WDYASIAVVKGDARVP 137

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKV RD+ M   H  +P YGFD H GYPTA H   +K  G S +HR +F P+
Sbjct: 138 AIAAASIVAKVARDQYMCEQHALWPHYGFDRHKGYPTAAHMAALKTYGVSPLHRRSFAPV 197

Query: 205 R 205
           R
Sbjct: 198 R 198


>gi|253702077|ref|YP_003023266.1| ribonuclease HII [Geobacter sp. M21]
 gi|259494065|sp|C6E5I4|RNH2_GEOSM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|251776927|gb|ACT19508.1| Ribonuclease H [Geobacter sp. M21]
          Length = 230

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/190 (50%), Positives = 122/190 (64%), Gaps = 4/190 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
           LE     +  + +AGIDE GRG LAGPVV AA+IL P  +  G+NDSK+++ +KREEL++
Sbjct: 18  LEGQALRRGFFRIAGIDEAGRGPLAGPVVAAAVILPPGLLLPGVNDSKQLTEEKREELFD 77

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS-IPEDLPC 131
            I   A+ + +    H  +D+ NI +ATL A+  AV  L + P   LIDG S IP ++P 
Sbjct: 78  VIHREALAVGVGIGDHALVDRINILQATLSAMRDAVRALSMTPGFLLIDGISNIPMNIPQ 137

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   V KGDS+SLSIA+ASIIAKVTRDR+M     +YP YGF SH GY  A H   I E 
Sbjct: 138 RT--VKKGDSLSLSIASASIIAKVTRDRMMVEYDAQYPGYGFASHKGYGAASHLAAIAEL 195

Query: 192 GPSCIHRLTF 201
           GP  IHR TF
Sbjct: 196 GPCPIHRKTF 205


>gi|319937633|ref|ZP_08012037.1| ribonuclease [Coprobacillus sp. 29_1]
 gi|319807275|gb|EFW03887.1| ribonuclease [Coprobacillus sp. 29_1]
          Length = 210

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/198 (40%), Positives = 125/198 (63%), Gaps = 5/198 (2%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           ER  +E  A    K+   + G+DE GRG +AGP+VVA +I +       INDSK++S KK
Sbjct: 3   ERLRYEKAAYALGKSY--IIGLDEAGRGPMAGPLVVAGVIFEKGYYHEAINDSKQLSEKK 60

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           RE LY+ I   A+   I     + +D+ N+++A+   +  A+ ++ + P  AL D   + 
Sbjct: 61  RESLYDLIIRDALAYQIEIIDVEDVDRLNVYQASKKGMIDAIHHIAIQPDFALSDAMPLG 120

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           +++   A  +IKGDS+S+SI AASI+AKVTRDR+M+    +YP+YGF  H GYPT +H++
Sbjct: 121 DEIAHNA--IIKGDSLSMSIGAASILAKVTRDRIMKKYDLQYPEYGFAQHKGYPTKQHKE 178

Query: 187 VIKEKGPSCIHRLTFRPL 204
           ++K  G + IHR +F+P+
Sbjct: 179 LLKMYGVTPIHRRSFQPV 196


>gi|315300687|gb|EFU59914.1| ribonuclease HII [Escherichia coli MS 16-3]
          Length = 198

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 110/182 (60%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L E+I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  + AV+ GDS   
Sbjct: 72  RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVTGDSRVP 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F P+
Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGPV 190

Query: 205 RN 206
           + 
Sbjct: 191 KR 192


>gi|229824939|ref|ZP_04451008.1| hypothetical protein GCWU000182_00288 [Abiotrophia defectiva ATCC
           49176]
 gi|229790942|gb|EEP27056.1| hypothetical protein GCWU000182_00288 [Abiotrophia defectiva ATCC
           49176]
          Length = 255

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/178 (50%), Positives = 112/178 (62%), Gaps = 3/178 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG LAGPVV AA+I   + I   +NDSKK++  KREEL+  I   AI +   
Sbjct: 72  ICGIDEVGRGPLAGPVVAAAVIFPKDLIIPYVNDSKKLTEAKREELFNHIMCEAISVGFG 131

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLPCQAFAVIKGDSIS 143
           S  +  ID+ NI ++T +A+  AV  L V P   L+DG + IPE L     A++ GD+ S
Sbjct: 132 SVDNSRIDEINILQSTFEAMRKAVSELNVKPDIILVDGDKKIPE-LDISQQAIVGGDAKS 190

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           LSIAAASI+AKV RDR M+    KYP Y F S+ GY + KH   IKE G S IHR TF
Sbjct: 191 LSIAAASIVAKVVRDRYMKEMDIKYPMYDFASNKGYGSKKHLTGIKEFGISPIHRKTF 248


>gi|89365772|dbj|BAE86854.1| RNase HII [Shewanella sp. SIB1]
          Length = 212

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 117/182 (64%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S K+R  LY++I  +A+ +S+ 
Sbjct: 24  VAGVDEVGRGPLIGDVVTAAVILDPNKPIVGLNDSKKLSEKRRNALYQQIMDNALSVSVG 83

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID+ NI  AT+ A+  AV  L ++P   L+DG  +P D    + A+IKGD +  
Sbjct: 84  RASPAEIDELNILHATMLAMQRAVAGLSILPERVLVDGNRVP-DFGIASHAIIKGDGLVA 142

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASIIAKVTRD  M +   +YP YGF  H GYPT  H + +   G    HR +F+P+
Sbjct: 143 AISAASIIAKVTRDAEMDMLDSQYPQYGFAKHKGYPTKAHFEALALYGVLPEHRKSFKPV 202

Query: 205 RN 206
            +
Sbjct: 203 AD 204


>gi|307244425|ref|ZP_07526536.1| ribonuclease HII [Peptostreptococcus stomatis DSM 17678]
 gi|306492244|gb|EFM64286.1| ribonuclease HII [Peptostreptococcus stomatis DSM 17678]
          Length = 263

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/184 (51%), Positives = 122/184 (66%), Gaps = 6/184 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG LAGPVV A ++L PN    GINDSKK+S +KR+ LY+ I + AI   I 
Sbjct: 84  VAGLDEVGRGPLAGPVVAAVVVLKPNARIEGINDSKKLSEEKRDALYDIIINEAIDYGIG 143

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            A +  ID+HNI  AT  A+  A+E L+V     L D   IP  D+P     +IKGD+ S
Sbjct: 144 MADNFEIDEHNILNATYIAMRRALEKLEVEVDCLLNDAVRIPGVDIP--QMPIIKGDAKS 201

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           +SIAAASI+AKVTRDR+M    K+YP YGF S+ GY T+ H Q +++ G + IHR +F  
Sbjct: 202 ISIAAASIVAKVTRDRMMVDYDKEYPGYGFASNKGYGTSDHYQGLEKFGRTKIHRNSF-- 259

Query: 204 LRNL 207
           L+NL
Sbjct: 260 LKNL 263


>gi|332711237|ref|ZP_08431170.1| RNase HII [Lyngbya majuscula 3L]
 gi|332350051|gb|EGJ29658.1| RNase HII [Lyngbya majuscula 3L]
          Length = 209

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/183 (45%), Positives = 117/183 (63%), Gaps = 5/183 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI- 80
           VAG+DEVGRGAL GPVV AA+IL  + +P     G+ DSKK+S K+R+ L E+I   A+ 
Sbjct: 22  VAGVDEVGRGALFGPVVAAAVILPVSVLPQLALAGVKDSKKLSRKRRQRLSEEIQGLALD 81

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            +I  A+   ID+ NI +A+L A+  AV  L+V P   LIDG  +  DLP     ++KGD
Sbjct: 82  WTIGYATSAEIDQLNILQASLLAMKRAVLKLKVKPDICLIDGLQVLPDLPIAQRNLVKGD 141

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
             SL IAAASI+AKV RD L+     KY +Y   +++GY T KH+  +++ GP  +HR++
Sbjct: 142 QRSLHIAAASIVAKVWRDDLIIRLAAKYSEYDLTANMGYGTKKHRLALQKYGPCRLHRMS 201

Query: 201 FRP 203
           F P
Sbjct: 202 FSP 204


>gi|160939135|ref|ZP_02086486.1| hypothetical protein CLOBOL_04029 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438098|gb|EDP15858.1| hypothetical protein CLOBOL_04029 [Clostridium bolteae ATCC
           BAA-613]
          Length = 222

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/205 (44%), Positives = 121/205 (59%), Gaps = 8/205 (3%)

Query: 8   ERPHFELEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           E+    LEAM   +  +     + GIDE GRG LAGPV   A++L        +NDSKK+
Sbjct: 14  EQEMARLEAMAEYEKEYDACTYICGIDEAGRGPLAGPVAAGAVVLPKGCRILYLNDSKKL 73

Query: 64  SHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           S K+REEL+ +I   A+  ++  AS   ID+ NI +AT +A+  AV+ L V P   L D 
Sbjct: 74  SEKRREELFLEIKEKAVAWNVGLASPARIDEINILQATYEAMREAVKGLSVKPEVLLNDA 133

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
            +IP  L      +IKGD+ SLSIAAASI+AKVTRD +M    + +P YGF  H GY TA
Sbjct: 134 VTIP-GLEGVQVPIIKGDAKSLSIAAASILAKVTRDHMMAEYEELFPGYGFAKHKGYGTA 192

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207
            H   I+E GP  IHR +F  +RN+
Sbjct: 193 AHIAAIRELGPCPIHRRSF--IRNI 215


>gi|42520908|ref|NP_966823.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|99034585|ref|ZP_01314549.1| hypothetical protein Wendoof_01000635 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|73917837|sp|Q73G60|RNH2_WOLPM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|42410649|gb|AAS14757.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 198

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/196 (44%), Positives = 123/196 (62%), Gaps = 6/196 (3%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII-LDPNNIPFGINDSKKISHKKR 68
           P F LE     K    +AG+DEVGRG LAGPV+ AA++ +D N I  GINDSKK++ + R
Sbjct: 4   PDFTLE----NKLSGVIAGVDEVGRGPLAGPVISAAVVFIDRNTIIDGINDSKKLTPQCR 59

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           + LYEKITS A   I  AS + I+ +NI +AT  ++  A+ +L +     L+DG   PE 
Sbjct: 60  QVLYEKITSVAKFGIGMASVEEINSYNILQATKLSMKRALIDLDLELDYVLVDGNQPPE- 118

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           +  Q  +++ GD++S SIAAASI+AKVTRDRLM+  H K+P+Y +  + GY T +H   I
Sbjct: 119 VKWQVKSIVNGDNLSTSIAAASIVAKVTRDRLMQELHNKHPEYNWYKNKGYGTKEHLNAI 178

Query: 189 KEKGPSCIHRLTFRPL 204
              G +  HR  F P+
Sbjct: 179 GLYGITEHHRKNFAPI 194


>gi|94497432|ref|ZP_01304002.1| Ribonuclease H [Sphingomonas sp. SKA58]
 gi|94423063|gb|EAT08094.1| Ribonuclease H [Sphingomonas sp. SKA58]
          Length = 199

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/183 (45%), Positives = 114/183 (62%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DE GRG LAGPVV AA+IL  ++ P G+NDSK++S KKR  L  ++ + A+   I 
Sbjct: 15  VAGVDEAGRGPLAGPVVAAAVILRADDCPDGLNDSKQLSAKKRAALEAQVKARALCWGIG 74

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID  NI  AT+ A+  AVE L       L+DG   P+     + AV+ GD+  L
Sbjct: 75  VASVAEIDDLNILWATMLAMTRAVEALSADCAHVLVDGNRCPQ-WRWASTAVVDGDAKCL 133

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASI+AK  RDR+M  A   +P YG++S+ GY +A H   ++E GP+ +HR +F P+
Sbjct: 134 SIAAASILAKEERDRMMIAAAADHPHYGWESNKGYGSAHHLAALREHGPTPLHRRSFSPV 193

Query: 205 RNL 207
             L
Sbjct: 194 AQL 196


>gi|220915421|ref|YP_002490725.1| Ribonuclease H [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953275|gb|ACL63659.1| Ribonuclease H [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 283

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/192 (42%), Positives = 116/192 (60%), Gaps = 2/192 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           EA + E+ +  VAG+DE G   LAGPVV  A +L  +  P GI+DSK++   +RE L E 
Sbjct: 69  EAELWERGLVRVAGVDEAGMAPLAGPVVAGACVLPLDYRPRGIDDSKQLDRAERERLAED 128

Query: 75  ITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I  +A+  +++ A  + ID+ NI+ A + A+  AV+ L   P   L+D R +P DLP   
Sbjct: 129 IKRNAVCWAVARADVEEIDRLNIYWAGMLALRRAVDGLSARPEHLLVDARKLP-DLPFPQ 187

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             ++ GD++SL+IAAASI+AK  RD LM      +P YGF  H GYPTA+H + +   G 
Sbjct: 188 TPIVHGDALSLTIAAASILAKTARDALMAELDLVHPGYGFARHKGYPTAEHFEALGRLGA 247

Query: 194 SCIHRLTFRPLR 205
             IHR +F P+R
Sbjct: 248 CPIHRRSFTPVR 259


>gi|297538517|ref|YP_003674286.1| Ribonuclease H [Methylotenera sp. 301]
 gi|297257864|gb|ADI29709.1| Ribonuclease H [Methylotenera sp. 301]
          Length = 194

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/189 (45%), Positives = 119/189 (62%), Gaps = 8/189 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           + G DE GRG LAG V  AA+IL+P+    G+ DSKK+S KKR+ L  +I   A+  +I+
Sbjct: 7   ICGADEAGRGPLAGAVYAAAVILNPDRPIIGLADSKKLSEKKRDLLSVEIKQYALAWAIA 66

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQV----IPRSALIDGRSIPE-DLPCQAFAVIKG 139
           S S Q ID+ NI +A+L A+  A+E +QV     P    +DG   P+  LPC+A  ++KG
Sbjct: 67  SCSAQEIDEINILQASLLAMKRAIEAMQVQFGITPDLVQVDGNKCPKISLPCEA--IVKG 124

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DS   +I+AASI+AKV RD  +    K YP YGF  H GYPTA H Q++   G + +HRL
Sbjct: 125 DSKVQAISAASILAKVARDAELYELDKIYPQYGFAKHKGYPTAFHLQMLDAHGVTPVHRL 184

Query: 200 TFRPLRNLS 208
           ++ P+R LS
Sbjct: 185 SYAPVRRLS 193


>gi|148269157|ref|YP_001243617.1| ribonuclease HII [Thermotoga petrophila RKU-1]
 gi|170287819|ref|YP_001738057.1| ribonuclease H [Thermotoga sp. RQ2]
 gi|281411455|ref|YP_003345534.1| Ribonuclease H [Thermotoga naphthophila RKU-10]
 gi|166226666|sp|A5IIL8|RNH2_THEP1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238688861|sp|B1LC19|RNH2_THESQ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|147734701|gb|ABQ46041.1| RNase HII [Thermotoga petrophila RKU-1]
 gi|170175322|gb|ACB08374.1| Ribonuclease H [Thermotoga sp. RQ2]
 gi|281372558|gb|ADA66120.1| Ribonuclease H [Thermotoga naphthophila RKU-10]
          Length = 238

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/188 (46%), Positives = 115/188 (61%), Gaps = 4/188 (2%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
           +K    VAG+DE GRG LAGPVV AA++L+      GINDSK++S  KRE L+++I   A
Sbjct: 8   KKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKE--IEGINDSKQLSPAKRERLFDEIMGKA 65

Query: 80  IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
            + I  AS + ID HNI  AT  A+  A+ENL V P   L+DG+ I   +P     ++KG
Sbjct: 66  AVGIGIASPEEIDLHNIFNATKLAMNRALENLSVGPSFVLVDGKGIELRVPGTC--LVKG 123

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D  S  I AASI+AKV RDRLM   HK YP + F  H GY T +H   I++ G   IHR+
Sbjct: 124 DQKSKLIGAASIVAKVFRDRLMSEFHKMYPQFSFHKHKGYATKEHLNEIRKNGVLPIHRM 183

Query: 200 TFRPLRNL 207
           +F P+  L
Sbjct: 184 SFEPVLEL 191


>gi|329912123|ref|ZP_08275683.1| Ribonuclease HII [Oxalobacteraceae bacterium IMCC9480]
 gi|327545705|gb|EGF30849.1| Ribonuclease HII [Oxalobacteraceae bacterium IMCC9480]
          Length = 188

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/183 (43%), Positives = 114/183 (62%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           + G+DE GRG LAGPV  AA+ILDP +   G+ DSKK++  +R+ L  +I + A+  SI+
Sbjct: 1   MCGVDEAGRGPLAGPVFAAAVILDPAHPIAGLRDSKKLTEARRDALAIEIKAHALAWSIA 60

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             SH  ID  NI +A+L A+  AV+ L   P  ALIDG   P  +  ++ A++ GD    
Sbjct: 61  ECSHHEIDAINILQASLLAMKRAVDTLPTTPTLALIDGNRCPV-MTVRSIAIVGGDDKVD 119

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AK  RD  + + H  YPDY FD H GYPTA H + ++  G S +HR ++ P+
Sbjct: 120 AISAASILAKTARDAALVVLHADYPDYAFDRHKGYPTALHLERLRLHGVSPVHRRSYAPV 179

Query: 205 RNL 207
           R L
Sbjct: 180 RRL 182


>gi|182625835|ref|ZP_02953601.1| ribonuclease HII [Clostridium perfringens D str. JGS1721]
 gi|177908869|gb|EDT71361.1| ribonuclease HII [Clostridium perfringens D str. JGS1721]
          Length = 272

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/221 (43%), Positives = 125/221 (56%), Gaps = 21/221 (9%)

Query: 5   SIPERPHFELEAMVRE----KNMWP----------VAGIDEVGRGALAGPVVVAAIILDP 50
           S+  R    L  +++E    KNM+           VAG+DEVGRG LAGP+V AA+ILD 
Sbjct: 54  SLGNRLEKNLNNLIKEEERVKNMYLFDKSFGDYKYVAGVDEVGRGPLAGPIVSAAVILDS 113

Query: 51  ---NNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYH 106
              ++I   INDSKK+S  KREEL E I   A+  SIS    + ID+  I          
Sbjct: 114 SDLDDIILYINDSKKLSEHKREELSEIIKEKALSYSISMCDSKEIDEKGIGYCNNHVFIK 173

Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166
           A E L + P   L DG  I ++   +   VIKGD+ S  IA ASIIAKV RD +M+  HK
Sbjct: 174 ACEGLNIKPDLVLSDGYLI-KNFNGENKHVIKGDTKSACIACASIIAKVYRDNIMKEYHK 232

Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           KYP Y F+ +VGY T  H   +KE GP+ IHR++F  L+N+
Sbjct: 233 KYPQYDFEKNVGYGTKTHVDALKEVGPTEIHRMSF--LKNI 271


>gi|146276125|ref|YP_001166284.1| ribonuclease HII [Rhodobacter sphaeroides ATCC 17025]
 gi|166226645|sp|A4WNL5|RNH2_RHOS5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|145554366|gb|ABP68979.1| Ribonuclease H [Rhodobacter sphaeroides ATCC 17025]
          Length = 212

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/198 (42%), Positives = 124/198 (62%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P +  E+    +    + G+DEVGRG LAGPV  AA+ L P  IP G+NDSKK+   +RE
Sbjct: 6   PDWSHESAAFAEGFTCIVGVDEVGRGPLAGPVTAAAVRLFPGRIPEGLNDSKKLPAARRE 65

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L  +I + A +S++ AS + ID+ NI +A+  A+  A+  L   P  ALIDG  IP+ L
Sbjct: 66  ALAAEILAVAEVSVAHASVEEIDRLNILQASHLAMARALAGLPCPPDFALIDGHLIPKGL 125

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             +  A++KGD++ LSIAAASI+AKV RDR+M    +++P YG+ ++ GY T  H Q + 
Sbjct: 126 AHRCRAIVKGDALCLSIAAASIVAKVARDRIMVDLEQQHPGYGWRTNAGYGTRDHLQALL 185

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G +  HR +F+P+ N+
Sbjct: 186 NLGLTPHHRRSFKPVHNI 203


>gi|239815594|ref|YP_002944504.1| ribonuclease HII [Variovorax paradoxus S110]
 gi|239802171|gb|ACS19238.1| Ribonuclease H [Variovorax paradoxus S110]
          Length = 240

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/180 (44%), Positives = 115/180 (63%), Gaps = 2/180 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DE GRG LAGPVV AA+ILD      G+ DSK ++  +RE L ++I + A+  S++
Sbjct: 22  VAGVDEAGRGPLAGPVVAAAVILDDQRPIRGLADSKTLTALQRERLNDQILAKALCCSVA 81

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A+ + ID HNI +AT+ A+  AVE L++ P   L+DG  +P  L   A A++KGD+   
Sbjct: 82  QATVEEIDTHNILQATMLAMRRAVEGLRLKPAKVLVDGNRLP-TLDVLAEAIVKGDARIK 140

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKV RDRL    H ++P YGF  H GY T +H + ++  G    HR +F P+
Sbjct: 141 AISAASILAKVHRDRLCEQLHLEFPHYGFAGHKGYGTPEHLEALQRHGACIHHRRSFSPV 200


>gi|308048683|ref|YP_003912249.1| RNase HII [Ferrimonas balearica DSM 9799]
 gi|307630873|gb|ADN75175.1| RNase HII [Ferrimonas balearica DSM 9799]
          Length = 191

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/181 (46%), Positives = 114/181 (62%), Gaps = 1/181 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S K+RE LY +I   A+   ++
Sbjct: 5   IAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLRDSKKLSEKRREALYHEIREKALAWCVA 64

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID+ NI  AT+ A+  AV  L V P    +DG   P+     A A++KGD    
Sbjct: 65  RASVAEIDQLNILHATMLAMQRAVAGLPVQPDFVRVDGNRCPDFGGIGAEALVKGDDKEP 124

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKVTRD  M+   +++P YGF +H GYPTA H   + E G    HR +F+P+
Sbjct: 125 AISAASILAKVTRDEEMKALDQRHPQYGFANHKGYPTAAHLAALAEHGALPEHRTSFKPV 184

Query: 205 R 205
           R
Sbjct: 185 R 185


>gi|311030147|ref|ZP_07708237.1| Ribonuclease H [Bacillus sp. m3-13]
          Length = 256

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/202 (41%), Positives = 125/202 (61%), Gaps = 9/202 (4%)

Query: 13  ELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           + E M + E+ +W      +AGIDEVGRG LAGPVV AA+IL  +    G+ DSKK++ +
Sbjct: 55  QFEEMKKYERPLWDKGCRYIAGIDEVGRGPLAGPVVAAAVILPEDFHLPGLTDSKKLNAQ 114

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           KRE  +  +   AI   I     + ID+ NI++AT  A+  AV+NL   P   LID   +
Sbjct: 115 KREHFFRYVKEHAISYGIGIIDSREIDQVNIYEATKLAMVQAVKNLHHTPEHLLIDAMKL 174

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
             DL  +  ++IKGD+ S+SIAAAS++AK TRD  M+   +++PDYGFD ++GY T +H 
Sbjct: 175 --DLDIEQTSIIKGDATSISIAAASVLAKETRDTYMKNLAQEFPDYGFDKNMGYGTPEHL 232

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
             ++E G +  HR +F P++ +
Sbjct: 233 LALQETGVTREHRQSFSPVKEM 254


>gi|224825027|ref|ZP_03698133.1| Ribonuclease H [Lutiella nitroferrum 2002]
 gi|224602698|gb|EEG08875.1| Ribonuclease H [Lutiella nitroferrum 2002]
          Length = 193

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/181 (44%), Positives = 113/181 (62%), Gaps = 1/181 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DE GRG LAG V  AA+ILDP     G+ DSKK+S K+R+EL   I   ++   I+
Sbjct: 2   IAGVDEAGRGPLAGAVFAAAVILDPARPIVGLADSKKLSEKQRDELAPLIRERSLAWCIA 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS   ID+ NI +AT+ A+  AV  L V+P   LIDG  +P+ +   A A++KGD++  
Sbjct: 62  SASVDEIDRLNILQATMLAMSRAVAGLSVLPAEVLIDGNRVPKGIAVPARAIVKGDALEP 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AK  RD  +      +P++GF  H GYPTA+H   I+  G    HR TF P+
Sbjct: 122 AISAASILAKTARDAELVALDALHPEFGFARHKGYPTAEHLAAIERFGVLPEHRRTFGPV 181

Query: 205 R 205
           +
Sbjct: 182 K 182


>gi|255281039|ref|ZP_05345594.1| ribonuclease HII [Bryantella formatexigens DSM 14469]
 gi|255268487|gb|EET61692.1| ribonuclease HII [Bryantella formatexigens DSM 14469]
          Length = 252

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/187 (45%), Positives = 118/187 (63%), Gaps = 12/187 (6%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDE GRG LAGPVV  A+IL        +NDSK++S K RE+LY++I   A+ + + 
Sbjct: 72  ICGIDEAGRGPLAGPVVAGAVILPKGCTIRYLNDSKQLSEKMREQLYDEIMERAVAVGVG 131

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP----EDLPCQAFAVIKGD 140
            AS   ID+ NI +AT +A+  A+  L V P   L D   IP    E +P     ++KGD
Sbjct: 132 MASPARIDEINILQATYEAMRDAIGALSVRPDILLNDAVRIPGTDIEQVP-----IVKGD 186

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           + SLSIAAAS+IAKVTRDRLM+      P+YGF +H GY +A H + +++ GPS IHR +
Sbjct: 187 AKSLSIAAASVIAKVTRDRLMKEYDALMPEYGFAAHKGYGSAAHIEALRQYGPSPIHRAS 246

Query: 201 FRPLRNL 207
           F  L+N+
Sbjct: 247 F--LKNI 251


>gi|295696077|ref|YP_003589315.1| Ribonuclease H [Bacillus tusciae DSM 2912]
 gi|295411679|gb|ADG06171.1| Ribonuclease H [Bacillus tusciae DSM 2912]
          Length = 240

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/205 (41%), Positives = 126/205 (61%), Gaps = 5/205 (2%)

Query: 4   NSIPERP---HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
             IP RP    +  E     K    +AG+DE G G LAGPVV AA++L  +    G+ DS
Sbjct: 7   RGIPTRPPGLGWNWEQYWWTKGYSRIAGVDEAGVGPLAGPVVAAAVVLPKDFDVAGLGDS 66

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           K+++ ++REE ++++   A+ + ++      ID+ NI +A   A+  AV  L     + L
Sbjct: 67  KRLTARQREEQFKRLRRDAVALEVAVVDADLIDRLNILQAARLAMRRAVAALGERCEAVL 126

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           +DGR++P D+P  + AV++GD+ S SIAAASI+AKVTRDRLM    ++YP YGF+ H GY
Sbjct: 127 VDGRTVP-DMPAPSLAVVRGDAQSPSIAAASIVAKVTRDRLMVEYGQRYPGYGFERHKGY 185

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPL 204
           PTA H + ++  GP  IHR +F P+
Sbjct: 186 PTAAHLEALERLGPCPIHRRSFGPV 210


>gi|302386482|ref|YP_003822304.1| Ribonuclease H [Clostridium saccharolyticum WM1]
 gi|302197110|gb|ADL04681.1| Ribonuclease H [Clostridium saccharolyticum WM1]
          Length = 213

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/177 (46%), Positives = 109/177 (61%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84
           V GIDE GRG LAGPVV  A+IL  +     +NDSKK+S K+RE L+E+I   A   ++ 
Sbjct: 32  VCGIDEAGRGPLAGPVVAGAVILPRDCEILFLNDSKKLSEKRREALFEEIMEKASAFAVG 91

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
                 ID+ NI +AT +A+  AV  L++ P   L D  +IP  +      +IKGD  S+
Sbjct: 92  VVGADRIDEINILQATYEAMRLAVAKLEIEPNVFLNDAVTIP-GIAASQVPIIKGDGKSV 150

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SIAAASI+AKVTRD +M    K +P+YGF  H GY TA H + +KE GP  IHR +F
Sbjct: 151 SIAAASIMAKVTRDHMMEEYDKLFPEYGFSRHKGYGTAVHMKALKEFGPCPIHRRSF 207


>gi|168210661|ref|ZP_02636286.1| ribonuclease HII [Clostridium perfringens B str. ATCC 3626]
 gi|170711299|gb|EDT23481.1| ribonuclease HII [Clostridium perfringens B str. ATCC 3626]
          Length = 272

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/221 (43%), Positives = 125/221 (56%), Gaps = 21/221 (9%)

Query: 5   SIPERPHFELEAMVRE----KNMWP----------VAGIDEVGRGALAGPVVVAAIILDP 50
           S+  R    L  +++E    KNM+           VAG+DEVGRG LAGP+V AA+ILD 
Sbjct: 54  SLGNRLEKNLNNLIKEEERVKNMYLFDNSFGDYKYVAGVDEVGRGPLAGPIVSAAVILDS 113

Query: 51  ---NNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYH 106
              ++I   INDSKK+S  KREEL E I   A+  SIS    + ID+  I          
Sbjct: 114 SDLDDIILYINDSKKLSEHKREELSEIIKEKALSYSISMCDSKEIDEKGIGYCNNHVFIK 173

Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166
           A E L + P   L DG  I ++   +   VIKGD+ S  IA ASIIAKV RD +M+  HK
Sbjct: 174 ACEGLSIKPDLVLSDGYLI-KNFNGENKHVIKGDTKSACIACASIIAKVYRDNIMKEYHK 232

Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           KYP Y F+ +VGY T  H   +KE GP+ IHR++F  L+N+
Sbjct: 233 KYPQYDFEKNVGYGTKTHVDALKEVGPTEIHRMSF--LKNI 271


>gi|262038337|ref|ZP_06011718.1| ribonuclease HII [Leptotrichia goodfellowii F0264]
 gi|261747641|gb|EEY35099.1| ribonuclease HII [Leptotrichia goodfellowii F0264]
          Length = 205

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/181 (45%), Positives = 112/181 (61%), Gaps = 7/181 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84
           + G+DE GRG LAGPVV AA+I+         INDSKK+S KKRE+L+E I    I+   
Sbjct: 15  IVGVDEAGRGPLAGPVVAAAVIIIQYFKELDEINDSKKLSEKKREQLFELIKEKCIVGTG 74

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRS----ALIDGRSIPEDLPCQAFAVIKGD 140
            A  + ID+ NI  AT  A+  A+   +V  +S     L+DG         +  AVIKGD
Sbjct: 75  IADEKEIDEINILNATFSAMRKAIN--EVKEKSDFDIVLVDGNHKIRKYEGEQEAVIKGD 132

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S SLSIAAASI+AKVTRD++M+   +++P+Y FD H GY T  H++++ +KGP   HR T
Sbjct: 133 SKSLSIAAASIVAKVTRDKMMKEMSEEFPEYRFDKHKGYATKLHREILLKKGPCKYHRKT 192

Query: 201 F 201
           F
Sbjct: 193 F 193


>gi|148284488|ref|YP_001248578.1| ribonuclease HII [Orientia tsutsugamushi str. Boryong]
 gi|189043633|sp|A5CDI4|RNH2_ORITB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|146739927|emb|CAM79925.1| ribonuclease HII [Orientia tsutsugamushi str. Boryong]
          Length = 205

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/183 (46%), Positives = 121/183 (66%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           VAG+DE GRG LAGPVV AA++++ + +   I DSK +S  KRE  Y+KIT+S   SI  
Sbjct: 16  VAGVDEAGRGPLAGPVVAAAVVVNQSIMIDDIKDSKVLSKSKRESCYDKITNSYYYSIGI 75

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           AS Q IDK+NI +AT  A   AV+NL +IP   L+DG     D   +  ++++GD I  S
Sbjct: 76  ASVQEIDKYNILEATKLACIRAVKNLAIIPTKVLVDGNMNFTD--NRFISIVRGDQICYS 133

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I++ASI+AKVTRDR+M+I HK+YP YG++ + GY T  H   IK  G +  HR++F+   
Sbjct: 134 ISSASIVAKVTRDRIMQILHKEYPVYGWNQNCGYGTKLHIDAIKTYGQTIHHRVSFKFKG 193

Query: 206 NLS 208
           N++
Sbjct: 194 NIN 196


>gi|332140483|ref|YP_004426221.1| ribonuclease HII [Alteromonas macleodii str. 'Deep ecotype']
 gi|254807962|sp|B4RVJ6|RNH2_ALTMD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|327550505|gb|AEA97223.1| ribonuclease HII [Alteromonas macleodii str. 'Deep ecotype']
          Length = 190

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/183 (46%), Positives = 112/183 (61%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP N   G+ DSKK+S KKR  L ++I   A+  +I 
Sbjct: 5   IAGVDEVGRGPLVGDVVTAAVILDPQNPIEGLTDSKKLSEKKRVALAQEIREKALYWNIG 64

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + IDK NI  AT+ A+  AVE L V P    +DG  +P      + AV+KGDS+  
Sbjct: 65  RASPEEIDKLNILHATMLAMIRAVEGLPVKPDFVRVDGNRLPA-WNFDSEAVVKGDSLHA 123

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKV RD  M   H+ +P Y F  H GYPT  H + I E G    +R +F+P+
Sbjct: 124 EISAASIIAKVERDNDMISLHEAFPQYNFAGHKGYPTKAHFEAIAEYGILDCYRKSFKPV 183

Query: 205 RNL 207
           + L
Sbjct: 184 KAL 186


>gi|146328634|ref|YP_001209596.1| ribonuclease HII [Dichelobacter nodosus VCS1703A]
 gi|189043593|sp|A5EV63|RNH2_DICNV RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|146232104|gb|ABQ13082.1| ribonuclease HII [Dichelobacter nodosus VCS1703A]
          Length = 189

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/184 (46%), Positives = 115/184 (62%), Gaps = 4/184 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83
           +AG+DE GRGA  G VV AA+IL PN+     + DSKK+S  KRE L   I   AI ++ 
Sbjct: 2   IAGVDEAGRGAWIGNVVAAAVIL-PNDYDLPDLTDSKKLSAAKRERLCAAIYEQAIAVAC 60

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +  S + ID+ NIH ATL A+  AV  L+V P   LIDG+  PE LP     +I GD++ 
Sbjct: 61  AWCSPEEIDQLNIHYATLCAMKKAVITLKVAPTEVLIDGKFAPE-LPFPTRTIIGGDALE 119

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AKVTRD+ M      YPDYGF +H GY T KHQQ +++ G   +HR ++ P
Sbjct: 120 PAISAASIVAKVTRDKQMIALDALYPDYGFAAHKGYGTQKHQQALRQFGVLPLHRRSYAP 179

Query: 204 LRNL 207
           +  L
Sbjct: 180 IAAL 183


>gi|110800212|ref|YP_696393.1| ribonuclease HII [Clostridium perfringens ATCC 13124]
 gi|123049754|sp|Q0TPP7|RNH2_CLOP1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|110674859|gb|ABG83846.1| ribonuclease HII [Clostridium perfringens ATCC 13124]
          Length = 272

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/221 (43%), Positives = 125/221 (56%), Gaps = 21/221 (9%)

Query: 5   SIPERPHFELEAMVRE----KNMWP----------VAGIDEVGRGALAGPVVVAAIILDP 50
           S+  R    L  +++E    KNM+           VAG+DEVGRG LAGP+V AA+ILD 
Sbjct: 54  SLGNRLEKNLNNLIKEEERVKNMYLFDKSFGDYKYVAGVDEVGRGPLAGPIVSAAVILDS 113

Query: 51  ---NNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYH 106
              ++I   INDSKK+S  KREEL E I   A+  SIS    + ID+  I          
Sbjct: 114 SDLDDIILYINDSKKLSEHKREELSEIIKEKALSYSISMCDSKEIDEKGIGYCNNHVFIK 173

Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166
           A E L + P   L DG  I ++   +   VIKGD+ S  IA ASIIAKV RD +M+  HK
Sbjct: 174 ACEGLSIKPDLVLSDGYLI-KNFNGENKHVIKGDTKSACIACASIIAKVYRDNIMKEYHK 232

Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           KYP Y F+ +VGY T  H   +KE GP+ IHR++F  L+N+
Sbjct: 233 KYPQYDFEKNVGYGTKTHVDALKEVGPTEIHRMSF--LKNI 271


>gi|168207943|ref|ZP_02633948.1| ribonuclease HII [Clostridium perfringens E str. JGS1987]
 gi|170660752|gb|EDT13435.1| ribonuclease HII [Clostridium perfringens E str. JGS1987]
          Length = 272

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/221 (43%), Positives = 125/221 (56%), Gaps = 21/221 (9%)

Query: 5   SIPERPHFELEAMVRE----KNMWP----------VAGIDEVGRGALAGPVVVAAIILDP 50
           S+  R    L  +++E    KNM+           VAG+DEVGRG LAGP+V AA+ILD 
Sbjct: 54  SLGNRLEKNLNNLIKEEERVKNMYLFDKSFGDYKYVAGVDEVGRGPLAGPIVSAAVILDS 113

Query: 51  ---NNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYH 106
              ++I   INDSKK+S  KREEL E I   A+  SIS    + ID+  I          
Sbjct: 114 SDLDDIILYINDSKKLSEHKREELSEIIKEKALSYSISMCDSKEIDEKGIGYCNNHVFIK 173

Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166
           A E L + P   L DG  I ++   +   VIKGD+ S  IA ASIIAKV RD +M+  HK
Sbjct: 174 ACEGLSIKPDLVLSDGYLI-KNFNGENKHVIKGDTKSACIACASIIAKVYRDNIMKEYHK 232

Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           KYP Y F+ +VGY T  H   +KE GP+ IHR++F  L+N+
Sbjct: 233 KYPQYDFEKNVGYGTKTHVDALKEVGPTEIHRMSF--LKNI 271


>gi|33592531|ref|NP_880175.1| ribonuclease HII [Bordetella pertussis Tohama I]
 gi|33596188|ref|NP_883831.1| ribonuclease HII [Bordetella parapertussis 12822]
 gi|33601596|ref|NP_889156.1| ribonuclease HII [Bordetella bronchiseptica RB50]
 gi|39932320|sp|Q7VYB6|RNH2_BORPE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|39932326|sp|Q7WA46|RNH2_BORPA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|39932331|sp|Q7WJ80|RNH2_BORBR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|33572177|emb|CAE41723.1| ribonuclease HII [Bordetella pertussis Tohama I]
 gi|33573191|emb|CAE36843.1| ribonuclease HII [Bordetella parapertussis]
 gi|33576032|emb|CAE33112.1| ribonuclease HII [Bordetella bronchiseptica RB50]
 gi|332381949|gb|AEE66796.1| ribonuclease HII [Bordetella pertussis CS]
          Length = 201

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/181 (44%), Positives = 113/181 (62%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84
           +AG+DE GRG LAG V  AA+ILDP+    G+ DSK +  ++RE L  +I + A+   ++
Sbjct: 17  IAGVDEAGRGPLAGAVYAAAVILDPDRPVDGLADSKVLKAEQREALAVQIRAQALAWFVA 76

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS Q ID  NI +AT+ A+  AV  L + P  A++DG   P+ L C    VIKGD++  
Sbjct: 77  SASVQEIDSLNILRATMLAMQRAVAGLAMAPELAMVDGNQAPK-LRCAVQTVIKGDALVP 135

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AK  RD  +   H  YP YGFD H GY T +H  +++E GP   HR +F P+
Sbjct: 136 AISAASILAKTARDADLLRLHALYPQYGFDQHKGYGTPQHLSLLREHGPCPEHRRSFAPI 195

Query: 205 R 205
           +
Sbjct: 196 K 196


>gi|114562462|ref|YP_749975.1| ribonuclease H [Shewanella frigidimarina NCIMB 400]
 gi|122300308|sp|Q085C8|RNH2_SHEFN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|114333755|gb|ABI71137.1| Ribonuclease H [Shewanella frigidimarina NCIMB 400]
          Length = 212

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 116/182 (63%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S K+R  LY++I  +A+ +S+ 
Sbjct: 24  VAGVDEVGRGPLIGDVVTAAVILDPNKPIVGLNDSKKLSEKRRNALYQQIMDNALSVSVG 83

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID+ NI  AT+ A+  AV  L ++P   L+DG  +P D    + A+IKGD +  
Sbjct: 84  RASPAEIDELNILHATMLAMQRAVAGLSILPERVLVDGNRVP-DFGIASHAIIKGDGLVA 142

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASIIAKVTRD  M     +YP YGF  H GYPT  H + +   G    HR +F+P+
Sbjct: 143 AISAASIIAKVTRDAEMDTLDSQYPQYGFAKHKGYPTKAHFEALALYGVLPDHRKSFKPV 202

Query: 205 RN 206
            +
Sbjct: 203 AD 204


>gi|169342697|ref|ZP_02863738.1| ribonuclease HII [Clostridium perfringens C str. JGS1495]
 gi|169299203|gb|EDS81273.1| ribonuclease HII [Clostridium perfringens C str. JGS1495]
          Length = 272

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/221 (43%), Positives = 125/221 (56%), Gaps = 21/221 (9%)

Query: 5   SIPERPHFELEAMVRE----KNMWP----------VAGIDEVGRGALAGPVVVAAIILDP 50
           S+  R    L  +++E    KNM+           VAG+DEVGRG LAGP+V AA+ILD 
Sbjct: 54  SLGNRLEKNLNNLIKEEERVKNMYLFDKSFGDYKYVAGVDEVGRGPLAGPIVSAAVILDS 113

Query: 51  NN---IPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYH 106
           +N   I   INDSKK+S  KREEL E I   A+  SIS    + ID+  I          
Sbjct: 114 SNLDDIILYINDSKKLSEHKREELSEIIKEKALSYSISMCDSKEIDEKGIGYCNNHVFIK 173

Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166
           A E L + P   L DG  I ++   +   VIKGD+ S  IA ASIIAKV RD +M+  HK
Sbjct: 174 ACEGLNIKPDLVLSDGYLI-KNFNGENKHVIKGDTKSACIACASIIAKVYRDNIMKEYHK 232

Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           KYP Y F+ +VGY T  H   +K+ GP+ IHR++F  L+N+
Sbjct: 233 KYPQYDFEKNVGYGTKTHVDALKKVGPTEIHRMSF--LKNI 271


>gi|227872391|ref|ZP_03990738.1| ribonuclease H [Oribacterium sinus F0268]
 gi|227841751|gb|EEJ52034.1| ribonuclease H [Oribacterium sinus F0268]
          Length = 217

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/204 (43%), Positives = 122/204 (59%), Gaps = 18/204 (8%)

Query: 14  LEAMVREKNMWP----------VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           L+   R K MW           +AG+DE GRG LAGPVV A  IL  +++ + +NDSKK+
Sbjct: 7   LKEEARLKEMWKLEEEHANLTFIAGVDEAGRGPLAGPVVAATAILPKDHLFYYLNDSKKM 66

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVE----NLQVIPRSA 118
           + K+RE L+ +I  +AI   I   S + ID+ NI +AT +A+  A+E    N  +IP   
Sbjct: 67  TEKRREALFLEIKENAIAYGIGIVSPERIDEINILQATYEAMRLAIEEMEKNFSIIPSLL 126

Query: 119 LIDGRSIPE-DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
           L D   IP  D+P     ++ GD+ SLSIAAAS++AKV+RD LM    K+YP+YGF+ H 
Sbjct: 127 LNDAVRIPMVDIP--QIPIVHGDAKSLSIAAASVLAKVSRDHLMLDYAKEYPEYGFEKHK 184

Query: 178 GYPTAKHQQVIKEKGPSCIHRLTF 201
           GY T  H + I E GP  IHR +F
Sbjct: 185 GYGTKAHTEAILEYGPCPIHRRSF 208


>gi|308274702|emb|CBX31301.1| Ribonuclease HII [uncultured Desulfobacterium sp.]
          Length = 214

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/199 (46%), Positives = 125/199 (62%), Gaps = 8/199 (4%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREE 70
           +EL A   EK    +AG+DE GRG +AGPVV AA+IL P + P  G+ DSKK++ KKR+ 
Sbjct: 8   YELSAF--EKGYNKIAGVDEAGRGPIAGPVVSAAVIL-PFSYPIEGVTDSKKLTPKKRDY 64

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPED 128
           LY  I   A+ I I       I++ NI +A+L ++  AV+NL       LIDG   IP  
Sbjct: 65  LYNIIYERAVSIGIGIVDPAEIERINILRASLLSMSIAVQNLSPESDYLLIDGIFPIPHT 124

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L  Q   +  GDS+SLS+AAASI+AKVTRDRLM   H +YP+YGF  H GYPT +H++ I
Sbjct: 125 LSQQP--IPHGDSLSLSVAAASIVAKVTRDRLMERYHYEYPEYGFIKHKGYPTKEHKEAI 182

Query: 189 KEKGPSCIHRLTFRPLRNL 207
           +  G   IHR +F+ ++ +
Sbjct: 183 RRSGCCPIHRRSFKGVKEV 201


>gi|290968507|ref|ZP_06560046.1| ribonuclease HII [Megasphaera genomosp. type_1 str. 28L]
 gi|290781503|gb|EFD94092.1| ribonuclease HII [Megasphaera genomosp. type_1 str. 28L]
          Length = 264

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/197 (47%), Positives = 126/197 (63%), Gaps = 2/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +E E M   + ++ +AGIDE GRG +AGPV++AA+IL P     G+NDSKKI+  KRE L
Sbjct: 62  YEPENMFYRQGIYEIAGIDEAGRGPVAGPVMIAAVILPPFWECAGLNDSKKIAPSKREAL 121

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           YEKI   A+ +S  +     ID  +I+ AT   +Y AV+ L V P++ L+D   + E L 
Sbjct: 122 YEKIMQEAVAVSCIAKERAEIDVADIYHATRQGMYEAVQALAVPPKAVLVDAMPLSE-LT 180

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++I GD+IS SIAAASIIAKVTRDR+MR   K YP YGF  H GY T  H   I++
Sbjct: 181 VPHRSLIHGDAISASIAAASIIAKVTRDRVMREYDKVYPQYGFAVHKGYLTQAHADAIRK 240

Query: 191 KGPSCIHRLTFRPLRNL 207
            GP  IHR +F P++++
Sbjct: 241 FGPCPIHRHSFEPIKSI 257


>gi|188992332|ref|YP_001904342.1| ribonuclease HII [Xanthomonas campestris pv. campestris str. B100]
 gi|189043675|sp|B0RW80|RNH2_XANCB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|167734092|emb|CAP52298.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 240

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/183 (44%), Positives = 118/183 (64%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII-SI 83
           +AG+DE GRG LAGPV VAA++ DP      G++DSK++S ++RE+LY +I   A+  S+
Sbjct: 33  IAGVDEAGRGPLAGPVAVAAVVFDPAKPRINGLDDSKQLSAERREQLYARIVDRALAWSV 92

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
                + ID+ NI++AT+  +  AVE +  +   A IDG  +P+ LP  A A+I GD++ 
Sbjct: 93  VLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPFPAEALIGGDALD 152

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I AASI+AKVTRDRLMR  H ++P+Y FD H GY T  H   ++  GP   HR +F P
Sbjct: 153 RAIMAASIVAKVTRDRLMRELHAQHPEYRFDLHKGYSTPAHLAALQTHGPCPQHRRSFAP 212

Query: 204 LRN 206
           +R 
Sbjct: 213 VRR 215


>gi|227529208|ref|ZP_03959257.1| ribonuclease H [Lactobacillus vaginalis ATCC 49540]
 gi|227350883|gb|EEJ41174.1| ribonuclease H [Lactobacillus vaginalis ATCC 49540]
          Length = 260

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/195 (42%), Positives = 119/195 (61%), Gaps = 4/195 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F+ E    ++    VAG+DEVGRG LAGPVV  A+IL P     G+ DSK+++  +RE L
Sbjct: 63  FKFEKQYWQQGCQYVAGMDEVGRGPLAGPVVTCAVILSPEFDLIGVTDSKQLTRHERENL 122

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DL 129
           Y +I + AI +SI+    Q ID+ NI+ AT +A+  +V  L   P S ++D   +P  D+
Sbjct: 123 YLQIVNEAIEVSIAVNDSQKIDQLNIYAATQNAMMTSVRQLHHQPESLIVDAVPLPALDI 182

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +IKGD  S+S+AAASI+AK  RD LMR   + YP Y F  ++GY T KH   ++
Sbjct: 183 P--QTTLIKGDQKSISVAAASIVAKEYRDHLMRDYDRIYPGYDFAENMGYGTKKHLAGLR 240

Query: 190 EKGPSCIHRLTFRPL 204
           + G + IHR +F P+
Sbjct: 241 KLGATPIHRRSFNPV 255


>gi|86156706|ref|YP_463491.1| ribonuclease HII [Anaeromyxobacter dehalogenans 2CP-C]
 gi|97182177|sp|Q2IMM4|RNH2_ANADE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|85773217|gb|ABC80054.1| ribonuclease H [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 283

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/192 (41%), Positives = 115/192 (59%), Gaps = 2/192 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           EA + E+ +  VAG+DE G   LAGPVV  A +L  +  P GI+DSK++   +RE L E 
Sbjct: 69  EAELWERGLVHVAGVDEAGMAPLAGPVVAGACVLPRDYRPRGIDDSKQLDRAERERLAED 128

Query: 75  ITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I  +A+  +++ A  + ID+ N++ A + A+  AV+ L   P   L+D R +P DLP   
Sbjct: 129 IKRNAVCWAVARAEVEEIDRLNVYWAGMLALRRAVDGLSARPEHLLVDARKLP-DLPFPQ 187

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             ++ GD++SL+IAAASI+AK  RD LM      +P YGF  H GYPTA+H   +   G 
Sbjct: 188 TPIVHGDALSLTIAAASILAKTARDALMAELDLAHPGYGFARHKGYPTAEHFDALGRLGA 247

Query: 194 SCIHRLTFRPLR 205
             IHR +F P+R
Sbjct: 248 CPIHRRSFAPVR 259


>gi|189184531|ref|YP_001938316.1| ribonuclease HII [Orientia tsutsugamushi str. Ikeda]
 gi|238692024|sp|B3CUN5|RNH2_ORITI RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|189181302|dbj|BAG41082.1| ribonuclease HII [Orientia tsutsugamushi str. Ikeda]
          Length = 205

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/183 (45%), Positives = 122/183 (66%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           +AG+DE GRG LAGPVV AA++++ + +   I DSK +S  KRE  Y+KIT++   SI  
Sbjct: 16  IAGVDEAGRGPLAGPVVAAAVVVNQSIMIDDIKDSKVLSKSKRESCYDKITNNYYYSIGI 75

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           AS Q IDK+NI +AT  A   AV+NL +IP   L+DG     D   +  ++++GD I  S
Sbjct: 76  ASVQEIDKYNILEATKLACIRAVKNLAIIPTKVLVDGNMNFTD--NRFISIVRGDQICYS 133

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           IA+ASI+AKVTRDR+M+I H++YP YG++ + GY T  H + IK  G +  HR++F+   
Sbjct: 134 IASASIVAKVTRDRMMQILHQEYPVYGWNQNCGYGTKLHIEAIKTYGQTIHHRVSFKFKG 193

Query: 206 NLS 208
           N++
Sbjct: 194 NIN 196


>gi|332994191|gb|AEF04246.1| ribonuclease HII [Alteromonas sp. SN2]
          Length = 191

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 112/183 (61%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP N   G+ DSKK+S KKR  L  +I + A+   I 
Sbjct: 5   IAGVDEVGRGPLVGDVVTAAVILDPANPIVGLTDSKKLSEKKRIALAAEIKAKALYWHIG 64

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A+ + ID  NI  AT+ A+  AVE L V P    +DG  +P D P  A AV+KGDS+  
Sbjct: 65  RATPEEIDTLNILHATMLAMKRAVEGLAVTPDFVRVDGNRLP-DWPYAAEAVVKGDSLYA 123

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKV RD  M    + +P+YGF  H GYPT  H + +   G    +R +F+P+
Sbjct: 124 EISAASIIAKVERDNDMLALDELHPEYGFAGHKGYPTKAHFEALATHGVIDGYRKSFKPV 183

Query: 205 RNL 207
           + L
Sbjct: 184 KAL 186


>gi|197120709|ref|YP_002132660.1| ribonuclease HII [Anaeromyxobacter sp. K]
 gi|196170558|gb|ACG71531.1| Ribonuclease H [Anaeromyxobacter sp. K]
          Length = 283

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/192 (41%), Positives = 116/192 (60%), Gaps = 2/192 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           EA + E+ +  VAG+DE G   LAGPVV  A +L  +  P GI+DSK++   +RE L E 
Sbjct: 69  EAELWERGLVHVAGVDEAGMAPLAGPVVAGACVLPLDYRPRGIDDSKQLDRAERERLAED 128

Query: 75  ITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I  +A+  +++ A  + ID+ N++ A + A+  AV+ L   P   L+D R +P DLP   
Sbjct: 129 IKRNAVCWAVARAEVEEIDRLNVYWAGMLALRRAVDGLSARPEHLLVDARKLP-DLPFPQ 187

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             ++ GD++SL+IAAASI+AK  RD LM      +P YGF  H GYPTA+H + +   G 
Sbjct: 188 TPIVHGDALSLTIAAASILAKTARDALMAELDLVHPGYGFARHKGYPTAEHFEALGRLGA 247

Query: 194 SCIHRLTFRPLR 205
             IHR +F P+R
Sbjct: 248 CPIHRRSFTPVR 259


>gi|315924213|ref|ZP_07920439.1| ribonuclease HII [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622615|gb|EFV02570.1| ribonuclease HII [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 262

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/192 (44%), Positives = 115/192 (59%), Gaps = 3/192 (1%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           H  +E   R +    ++GIDEVGRG LAGPVV AA+IL   +   GI+DSKKIS K+RE 
Sbjct: 66  HQAIERAARAQGYALISGIDEVGRGPLAGPVVAAAVILPETSAIAGIDDSKKISAKRRET 125

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L   I   A+ I I     + ID  NI +AT  A+ +AV  L   P   LID   +P  +
Sbjct: 126 LNAAIRDEALAIGIGVVDPETIDAMNILEATKLAMTNAVAQLVPRPDLLLIDALKLPSQI 185

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P QA  V+ GD+    I AASI+AKV RD LM+   + YP+YGF+ ++GY TA H + I+
Sbjct: 186 PVQA--VVHGDARCYCIGAASIVAKVYRDHLMQEYARTYPEYGFERNMGYGTAAHIEAIQ 243

Query: 190 EKGPSCIHRLTF 201
             GP+ +HR +F
Sbjct: 244 TCGPTPVHRRSF 255


>gi|260495645|ref|ZP_05815769.1| ribonuclease HII [Fusobacterium sp. 3_1_33]
 gi|260196828|gb|EEW94351.1| ribonuclease HII [Fusobacterium sp. 3_1_33]
          Length = 214

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/189 (44%), Positives = 117/189 (61%), Gaps = 8/189 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84
           V G+DE GRG LAGPVV AA+IL   +     INDSKK++ KKRE+LY+ I  +  +++ 
Sbjct: 19  VIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSKKLTEKKREKLYDIIMKNFYVAVG 78

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPCQAFAVIKG 139
            ++ + IDK NI  A   A+  A+++L+ I +       L+DG    ++   +   ++KG
Sbjct: 79  ISTVEEIDKMNILNADFLAMRRALKDLENIKKDKKEYIVLVDGNLKIKEYSGKQLPIVKG 138

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHR 198
           D+ SLS+AAASIIAKVTRDRLM+     YPDY F+ H GY T  H +VIK KG    +HR
Sbjct: 139 DAKSLSVAAASIIAKVTRDRLMKDLANTYPDYSFEKHKGYGTKAHIEVIKNKGAIEGVHR 198

Query: 199 LTF-RPLRN 206
             F R + N
Sbjct: 199 KVFLRKINN 207


>gi|238751436|ref|ZP_04612928.1| Ribonuclease HII [Yersinia rohdei ATCC 43380]
 gi|238710303|gb|EEQ02529.1| Ribonuclease HII [Yersinia rohdei ATCC 43380]
          Length = 183

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/180 (45%), Positives = 111/180 (61%), Gaps = 2/180 (1%)

Query: 29  IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSAS 87
           +DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++I   A+  S+  A 
Sbjct: 1   MDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEIIDKALSWSLGRAE 60

Query: 88  HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147
            + ID  NI  AT+ A+  AV  L ++P   LIDG   P+ L   + AV+KGDS    I+
Sbjct: 61  PEEIDHLNILHATMLAMQRAVAGLHIVPDYVLIDGNRCPQ-LAMPSLAVVKGDSRVAEIS 119

Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           AASI+AKVTRDR M    + +P+YGF  H GYPTA H + +   G +  HR +F P++ +
Sbjct: 120 AASILAKVTRDREMTELDRHFPEYGFAQHKGYPTAVHLEKLSTFGATEHHRRSFGPVKRV 179


>gi|310641522|ref|YP_003946280.1| ribonuclease hii [Paenibacillus polymyxa SC2]
 gi|309246472|gb|ADO56039.1| Ribonuclease HII [Paenibacillus polymyxa SC2]
          Length = 229

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/206 (44%), Positives = 124/206 (60%), Gaps = 8/206 (3%)

Query: 4   NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           N++ +  H+E +    E++   +AGIDEVGRG L G VV AA+IL    +  G++DSKK+
Sbjct: 20  NAVKDMLHYEKKCW--EQSCERIAGIDEVGRGCLFGDVVAAAVILPVGELLEGVDDSKKL 77

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           + KKRE  YE I   AI + +     + ID+ NI +A   A+  AVE L V P   L+D 
Sbjct: 78  TDKKREAYYELIMEKAIAVGVGHVDARMIDEINIKQAARLAMKKAVEALHVSPDYLLVDA 137

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA-HKKYPDYGFDSHVGYPT 181
             +  D+P    ++IKGD+ S SIAAASIIAKVTRDRL +     KYP+YG   H GY T
Sbjct: 138 EKV--DVPIPQLSIIKGDANSQSIAAASIIAKVTRDRLCKGEWDAKYPEYGIGIHKGYAT 195

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207
             H++ I   GP+ +HR +F  L NL
Sbjct: 196 KLHREQILALGPTEMHRRSF--LGNL 219


>gi|298370293|ref|ZP_06981609.1| ribonuclease HII [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281753|gb|EFI23242.1| ribonuclease HII [Neisseria sp. oral taxon 014 str. F0314]
          Length = 196

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/184 (45%), Positives = 116/184 (63%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
           +AG+DE GRG L G V  AA+IL +  ++P G+ DSKK+S KKR+ L   I   A+  SI
Sbjct: 6   LAGMDEAGRGPLVGSVFAAAVILPERYDLP-GLTDSKKLSEKKRDTLAVSIKEQAVSWSI 64

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS + I + NI  AT+ A+  AV+ L V+P   LIDG  +P+DL   A AV+KGDS  
Sbjct: 65  ASASPEEIAELNILHATMLAMARAVQGLAVVPDKVLIDGNRVPKDLGVPAEAVVKGDSKI 124

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           + I+AAS++AK  RD  M    ++YP YGFD H GY TA+H   +++ G    HR  F P
Sbjct: 125 IEISAASVLAKTARDAEMYALAERYPQYGFDKHKGYGTAQHLAALQKYGVLPEHRRDFAP 184

Query: 204 LRNL 207
           ++ L
Sbjct: 185 VKAL 188


>gi|167563174|ref|ZP_02356090.1| ribonuclease HII [Burkholderia oklahomensis EO147]
 gi|167570357|ref|ZP_02363231.1| ribonuclease HII [Burkholderia oklahomensis C6786]
          Length = 214

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/181 (46%), Positives = 120/181 (66%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           V G+DE GRG LAGPVV AA++LDP     G++DSK +S KKRE L+++I + ++   ++
Sbjct: 28  VCGVDEAGRGPLAGPVVAAAVVLDPARPIEGLDDSKALSAKKRERLFDEIVAHSLAYCVA 87

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS + ID  NI  AT+ A+  AVE L + P  A IDG   P  L  ++ A++ GD++  
Sbjct: 88  SASVEEIDTLNILHATMLAMKRAVEGLAMRPTLAKIDGNRCPT-LSIRSVAIVGGDALVP 146

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI+AASI+AKVTRDR++   H+ +P YGF+ H GY T +H   ++E GP   HR +F P+
Sbjct: 147 SISAASILAKVTRDRMLVDLHQLFPMYGFNVHAGYGTPRHLAALREHGPCEHHRRSFAPV 206

Query: 205 R 205
           R
Sbjct: 207 R 207


>gi|73662831|ref|YP_301612.1| ribonuclease HII [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|97189330|sp|Q49X31|RNH2_STAS1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|72495346|dbj|BAE18667.1| ribonuclease HII [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 256

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 81/183 (44%), Positives = 121/183 (66%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG LAGPVV  A+IL+ N+   G+NDSKK+S K+R  +  K+ +     +  
Sbjct: 74  ICGIDEVGRGPLAGPVVTCAVILNKNHHFTGLNDSKKLSAKQRHSIESKLLNDVYAYAYG 133

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID+ NI++AT  A++ A+E L++ P   L+D  ++  D+P    ++IKGD+ S+
Sbjct: 134 YASVEEIDEINIYEATKLAMHRAIEGLRIKPTHLLVDAMTLDIDIP--QTSLIKGDAKSV 191

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAAS++AK  RD+ MR   +KYP Y F+++VGY T +H   IK+ G    HR TF P+
Sbjct: 192 SIAAASVLAKEHRDQYMRDLGRKYPGYSFENNVGYGTQQHLDGIKKYGILNEHRKTFEPI 251

Query: 205 RNL 207
           ++L
Sbjct: 252 KSL 254


>gi|251797462|ref|YP_003012193.1| ribonuclease H [Paenibacillus sp. JDR-2]
 gi|247545088|gb|ACT02107.1| Ribonuclease H [Paenibacillus sp. JDR-2]
          Length = 203

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/189 (45%), Positives = 118/189 (62%), Gaps = 9/189 (4%)

Query: 20  EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E+ +W      +AG+DEVGRG L G VV AA+IL P+ +  G+NDSKK+S KKR ELY+ 
Sbjct: 5   EERLWAEGYSAIAGVDEVGRGCLFGDVVAAAVILPPHLVLEGVNDSKKLSEKKRNELYDI 64

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   +I  + +    + ID+ NI +A   A+  A+E+L+  P   L+D   +  DLP   
Sbjct: 65  IVDQSIAWAAARVDAETIDRINIKQAARLAMKIALESLKTEPDYFLVDAEKV--DLPKPQ 122

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK-YPDYGFDSHVGYPTAKHQQVIKEKG 192
            A+IKGD+ S SIAAASIIAKVTRDRL     ++ YP+YG   H GY T  H++ + E G
Sbjct: 123 LAIIKGDATSQSIAAASIIAKVTRDRLCEKEWEQLYPEYGIAIHKGYATKLHRERLLEYG 182

Query: 193 PSCIHRLTF 201
            S +HR +F
Sbjct: 183 ASPLHRKSF 191


>gi|238926779|ref|ZP_04658539.1| ribonuclease HII [Selenomonas flueggei ATCC 43531]
 gi|238885311|gb|EEQ48949.1| ribonuclease HII [Selenomonas flueggei ATCC 43531]
          Length = 259

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 92/197 (46%), Positives = 122/197 (61%), Gaps = 2/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +  E    E+    VAGIDE GRG LAGPV VAA+IL    +   +NDSKK+S K REEL
Sbjct: 52  YSYERCAAERGNCIVAGIDEAGRGPLAGPVAVAAVILPQEYLLLRLNDSKKLSEKVREEL 111

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           YE I S A+   +     + ID+ NI +AT   +Y AV  L   P+  LID  ++P  L 
Sbjct: 112 YETIVSDAVSYHVELIDAETIDRMNILEATRRGMYDAVAALLPTPQEVLIDAVALPR-LR 170

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             + +++KGD+ S SIAAASI+AKVTRDRLM    K+YP YGF  H GY T +H + I++
Sbjct: 171 MASQSIVKGDAKSASIAAASILAKVTRDRLMLTYDKEYPVYGFAQHKGYGTREHIEAIRK 230

Query: 191 KGPSCIHRLTFRPLRNL 207
            G   +HR TF P+R++
Sbjct: 231 YGICPLHRKTFEPIRSM 247


>gi|296536589|ref|ZP_06898669.1| ribonuclease H [Roseomonas cervicalis ATCC 49957]
 gi|296263085|gb|EFH09630.1| ribonuclease H [Roseomonas cervicalis ATCC 49957]
          Length = 205

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 84/192 (43%), Positives = 120/192 (62%), Gaps = 9/192 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82
           VAG+DE GRG LAGPV+ AA++     P+ +   ++DSKK+S +KRE  +  + ++A   
Sbjct: 14  VAGVDEAGRGPLAGPVMAAAVMFHGAPPDTLAMLLDDSKKLSAEKREAAFAVLRAAARAG 73

Query: 83  I-----SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137
           +     ++AS   I + NI +AT  A++ AV  L  +P   L+DG + P  LPC    V+
Sbjct: 74  VLDYAIAAASAAEIGRLNILRATHLAMWRAVSRLPALPDLVLVDGNAAPR-LPCATRCVV 132

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGDS+SLSIAAASI+AKVTRDR M     ++P YGF  H GYPTA H+  +++ GP   H
Sbjct: 133 KGDSLSLSIAAASILAKVTRDRAMIRLDGRWPGYGFARHAGYPTAAHRAALEKLGPCPHH 192

Query: 198 RLTFRPLRNLSV 209
           R  F P+  L++
Sbjct: 193 RRGFAPVDQLAL 204


>gi|312862697|ref|ZP_07722937.1| ribonuclease HII [Streptococcus vestibularis F0396]
 gi|311101557|gb|EFQ59760.1| ribonuclease HII [Streptococcus vestibularis F0396]
          Length = 256

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 84/207 (40%), Positives = 125/207 (60%), Gaps = 7/207 (3%)

Query: 6   IPERPHFEL----EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61
           I E    E+    E ++  + +  +AG+DEVGRG LAGPVV AA+IL       G+NDSK
Sbjct: 48  IAEEERLEMMLSYEKVLYAQGVELIAGVDEVGRGPLAGPVVAAAVILPKFCKIKGLNDSK 107

Query: 62  KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           KI   K E +Y+++   A+ + +    +  ID  NI++AT  A+  A+ENL   P   LI
Sbjct: 108 KIPKSKHEAIYKQVMKEAVAVGVGIKDNHVIDDVNIYEATKLAMAEAIENLSPKPEHLLI 167

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           D  ++  DLP    ++IKGD+ SLSIAAASI+AKVTRD++M    +++P Y F  + GY 
Sbjct: 168 DAMTL--DLPIGQTSIIKGDANSLSIAAASIVAKVTRDKMMADYDQEFPGYAFAKNAGYG 225

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           T  H   + + G + IHR +F P++++
Sbjct: 226 TKDHLTGLDKFGVTPIHRRSFEPIKSI 252


>gi|302670910|ref|YP_003830870.1| ribonuclease HII RnhB [Butyrivibrio proteoclasticus B316]
 gi|302395383|gb|ADL34288.1| ribonuclease HII RnhB [Butyrivibrio proteoclasticus B316]
          Length = 253

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 94/191 (49%), Positives = 128/191 (67%), Gaps = 2/191 (1%)

Query: 13  ELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           E++   RE   +  + GIDEVGRG LAGPV  AA+IL  ++  + +NDSKK+S KKREEL
Sbjct: 58  EMKKYERENAGLGLLCGIDEVGRGPLAGPVYAAAVILPTDSEIYYLNDSKKLSEKKREEL 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I   AI + I  ++ + ID+ NI +AT +A+  AV +L V P   LID   IP+   
Sbjct: 118 YDVIMDKAISVGIGYSTCERIDEINILQATYEAMTKAVNSLSVKPGGLLIDAVHIPQLEE 177

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            +  ++IKGD+ S SIAAASIIAKVTRDR+M+   K+YP+YGFDS+ GY +A H   +K+
Sbjct: 178 YKQISIIKGDAKSASIAAASIIAKVTRDRIMKDYAKEYPEYGFDSNKGYGSADHIAALKK 237

Query: 191 KGPSCIHRLTF 201
            GP  IHR +F
Sbjct: 238 YGPCPIHRRSF 248


>gi|240142860|ref|YP_002967373.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Methylobacterium
           extorquens AM1]
 gi|240012807|gb|ACS44032.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Methylobacterium
           extorquens AM1]
          Length = 222

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 85/201 (42%), Positives = 120/201 (59%), Gaps = 8/201 (3%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN---DSKKISH 65
           RP +E E    +     VAG+DE GRG LAG V  AA+++ P+    G++   DSK ++ 
Sbjct: 4   RPTYERERAAGKV----VAGVDECGRGCLAGEVWAAAVVI-PDWAAAGVSAVADSKILAA 58

Query: 66  KKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
            KRE+L E + +S   +I +AS + I++ NI +AT+ A+  AV  L V P   L+DG  +
Sbjct: 59  AKREQLCEMLRTSCHAAIGTASLEEIERLNILQATMLAMSRAVAALPVRPDHVLVDGNRV 118

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P+ LPC A AV+ GD+   +IAAASI+AKV RD  M   H  +P YG+D + GY T +H 
Sbjct: 119 PKGLPCAATAVVGGDATVRAIAAASIVAKVGRDAAMASLHLAHPAYGWDRNAGYGTPEHL 178

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
             I+  GPS  HR TF  +R 
Sbjct: 179 AAIRTHGPSPHHRRTFAGVRE 199


>gi|18310688|ref|NP_562622.1| ribonuclease HII [Clostridium perfringens str. 13]
 gi|39932438|sp|Q8XJQ0|RNH2_CLOPE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|18145369|dbj|BAB81412.1| ribonuclease HII [Clostridium perfringens str. 13]
          Length = 272

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 95/221 (42%), Positives = 126/221 (57%), Gaps = 21/221 (9%)

Query: 5   SIPERPHFELEAMVRE----KNMWP----------VAGIDEVGRGALAGPVVVAAIILDP 50
           S+  R    L  +++E    KNM+           VAG+DEVGRG LAGP+V AA+ILD 
Sbjct: 54  SLGNRLEKNLNNLIKEEERVKNMYLFDKSFGDYKYVAGVDEVGRGPLAGPIVSAAVILDS 113

Query: 51  ---NNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYH 106
              ++I   INDSKK+S  KREEL E I   A+  SIS    + ID+  I     +    
Sbjct: 114 SDLDDIILYINDSKKLSEHKREELSEIIKEKALSYSISMCDSKEIDEKGIGYCNNEVFIK 173

Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166
           A E L + P   L DG  I ++   +   VIKGD+ S  IA ASIIAKV RD +M+  +K
Sbjct: 174 ACEGLSIKPDLVLSDGYLI-KNFNGENKHVIKGDTKSACIACASIIAKVYRDNIMKEYNK 232

Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           KYP Y F+ +VGY T  H   +KE GP+ IHR++F  L+N+
Sbjct: 233 KYPQYDFEKNVGYGTKTHVDALKEVGPTEIHRMSF--LKNI 271


>gi|291542667|emb|CBL15777.1| RNase HII [Ruminococcus bromii L2-63]
          Length = 201

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 81/182 (44%), Positives = 113/182 (62%), Gaps = 2/182 (1%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +    + G+DE GRG LAGPV  AA+IL  N +  G+NDSKK+S KKRE L++ I   A+
Sbjct: 13  RGFLSICGVDEAGRGPLAGPVCAAAVILPENTVIEGVNDSKKLSEKKREALFDVIKEQAL 72

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             SI+ AS + I++ NI  A + A+  AVE L+     A+IDG  +P  L  +   ++KG
Sbjct: 73  AYSIAFASVEEIEEMNILNAAMLAMKRAVEGLEPRADYAMIDGNRMP-PLSIEGECIVKG 131

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D+ S+SIA ASI+AKV+RDRL+    K++P Y F  H GY T  H + I + GP   HR 
Sbjct: 132 DAKSMSIACASILAKVSRDRLLYEYDKEFPQYLFAKHKGYGTKAHIEAILKYGPCKYHRP 191

Query: 200 TF 201
           +F
Sbjct: 192 SF 193


>gi|296268970|ref|YP_003651602.1| ribonuclease H [Thermobispora bispora DSM 43833]
 gi|296091757|gb|ADG87709.1| Ribonuclease H [Thermobispora bispora DSM 43833]
          Length = 241

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/191 (41%), Positives = 115/191 (60%), Gaps = 4/191 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +  E  +  K   PVAG+DE GRGA AGP+VVA++IL       G+ DSK +    RE L
Sbjct: 19  YGYERALARKGFAPVAGVDEAGRGACAGPLVVASVILGRRIA--GLADSKLLGEPVRERL 76

Query: 72  YEKITSSAIISISSA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++++ ++A            ID+H +HK  +  +  AV  L + P   L+DG  +P  LP
Sbjct: 77  HDRVVAAAQAVSVVVIPPGEIDEHGLHKCNVAGVRRAVAGLGLEPGYILVDGFPVP-GLP 135

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             + A+ KGD ++  +AAASI+AKVTRDRLMR  H++YP+YGFD++ GY TA H++ +  
Sbjct: 136 APSLAMWKGDRVAACVAAASIVAKVTRDRLMRRLHERYPEYGFDTNKGYVTAAHRRALAR 195

Query: 191 KGPSCIHRLTF 201
            GP   HR +F
Sbjct: 196 YGPCPEHRFSF 206


>gi|284040939|ref|YP_003390869.1| ribonuclease H [Spirosoma linguale DSM 74]
 gi|283820232|gb|ADB42070.1| Ribonuclease H [Spirosoma linguale DSM 74]
          Length = 191

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/180 (46%), Positives = 118/180 (65%), Gaps = 3/180 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DEVGRG LAGPVV AA+IL  +     +NDSK++SH++RE L + I   AI  +++ 
Sbjct: 13  AGLDEVGRGCLAGPVVAAAVILPKDYTHPILNDSKQLSHRQRELLKQDIERDAIAWAVAE 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLPCQAFAVIKGDSISL 144
            SH+ ID+ NI KA+  A++ AV+ L V P   L+DG R +P  +      +IKGD+  L
Sbjct: 73  VSHEDIDRINILKASFLAMHRAVDALTVKPEHLLVDGNRFVPYPMTPHT-CIIKGDAHYL 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAAS++AK  RD LM     ++P YG+  +VGYPT  H+  I++ GP+  HR++FR L
Sbjct: 132 SIAAASVLAKTYRDDLMAQLGLEFPAYGWAQNVGYPTPIHRAAIRQFGPTKYHRMSFRLL 191


>gi|310658877|ref|YP_003936598.1| ribonuclease hii (rnase hii) [Clostridium sticklandii DSM 519]
 gi|308825655|emb|CBH21693.1| Ribonuclease HII (RNase HII) [Clostridium sticklandii]
          Length = 256

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 81/197 (41%), Positives = 120/197 (60%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F +E  +  +    + G+DE GRG LAGPVV A +ILD N +  GI+DSKK+S K R+ +
Sbjct: 61  FIIEETLFAEGYKKIGGVDEAGRGPLAGPVVSACVILDKNPMIDGIDDSKKVSEKNRDRI 120

Query: 72  YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ I +S II  I  +    ID++NI  AT  A+  ++      P   ++DG     D+ 
Sbjct: 121 FDTIVNSDIIYGIGISDSNEIDEYNILNATFLAMKRSIAMASQRPDFIIVDGNQQITDIN 180

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +++GDS S+SIA ASI+AKVTRD++M+   + YP YGFD H GY T +H + I +
Sbjct: 181 HPQRCIVQGDSKSISIACASILAKVTRDKIMKQYAEIYPQYGFDKHKGYGTKEHIEAINK 240

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHRL+F  L+N+
Sbjct: 241 YGITPIHRLSF--LKNI 255


>gi|75907505|ref|YP_321801.1| ribonuclease HII [Anabaena variabilis ATCC 29413]
 gi|97182199|sp|Q3MDN0|RNH2_ANAVT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|75701230|gb|ABA20906.1| RNase HII [Anabaena variabilis ATCC 29413]
          Length = 225

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/183 (45%), Positives = 118/183 (64%), Gaps = 5/183 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI- 80
           VAG+DEVGRGAL GPVV A++IL  ++ P      I DSKK+SH +R +L ++I++ AI 
Sbjct: 37  VAGVDEVGRGALFGPVVAASVILPASSFPQLMTAEIKDSKKLSHSRRVQLAQQISTLAID 96

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             I  A+   ID+ NI +ATL A+  +V+ L++ P   L+DG    +DLP     ++KGD
Sbjct: 97  WRIGYATTAEIDRINILQATLLAMRRSVKKLKLQPILCLVDGNQPVQDLPILQQTIVKGD 156

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
             SL+IAAASI+AKV RD L++    KYP Y   S+ GY + KH   +++ G S +HR +
Sbjct: 157 ERSLNIAAASIMAKVWRDDLIQRLSTKYPMYDLKSNKGYGSKKHLLALEKHGASPLHRQS 216

Query: 201 FRP 203
           FRP
Sbjct: 217 FRP 219


>gi|49483407|ref|YP_040631.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425298|ref|ZP_05601723.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427958|ref|ZP_05604356.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430591|ref|ZP_05606973.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433352|ref|ZP_05609710.1| ribonuclease HII [Staphylococcus aureus subsp. aureus E1410]
 gi|257436194|ref|ZP_05612241.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M876]
 gi|282903799|ref|ZP_06311687.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C160]
 gi|282905562|ref|ZP_06313417.1| ribonuclease HII [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908537|ref|ZP_06316367.1| ribonuclease HII [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910816|ref|ZP_06318619.1| ribonuclease HII [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914021|ref|ZP_06321808.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M899]
 gi|282918943|ref|ZP_06326678.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C427]
 gi|282924066|ref|ZP_06331742.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C101]
 gi|283957987|ref|ZP_06375438.1| ribonuclease HII [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293501052|ref|ZP_06666903.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510014|ref|ZP_06668722.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M809]
 gi|293526601|ref|ZP_06671286.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M1015]
 gi|295427731|ref|ZP_06820363.1| ribonuclease HII [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297591311|ref|ZP_06949949.1| ribonuclease H [Staphylococcus aureus subsp. aureus MN8]
 gi|56749568|sp|Q6GHJ1|RNH2_STAAR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|49241536|emb|CAG40222.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271755|gb|EEV03893.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274799|gb|EEV06286.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278719|gb|EEV09338.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281445|gb|EEV11582.1| ribonuclease HII [Staphylococcus aureus subsp. aureus E1410]
 gi|257284476|gb|EEV14596.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M876]
 gi|282314038|gb|EFB44430.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C101]
 gi|282316753|gb|EFB47127.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C427]
 gi|282322089|gb|EFB52413.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M899]
 gi|282325421|gb|EFB55730.1| ribonuclease HII [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327599|gb|EFB57882.1| ribonuclease HII [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330854|gb|EFB60368.1| ribonuclease HII [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595417|gb|EFC00381.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C160]
 gi|283790136|gb|EFC28953.1| ribonuclease HII [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290920673|gb|EFD97736.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M1015]
 gi|291096057|gb|EFE26318.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466958|gb|EFF09476.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M809]
 gi|295128089|gb|EFG57723.1| ribonuclease HII [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297576197|gb|EFH94913.1| ribonuclease H [Staphylococcus aureus subsp. aureus MN8]
 gi|312438378|gb|ADQ77449.1| ribonuclease HII [Staphylococcus aureus subsp. aureus TCH60]
 gi|315194133|gb|EFU24526.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 255

 Score =  145 bits (365), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 120/201 (59%), Gaps = 4/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +    N   + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENEILTENPNAI-ICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP    ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ + GY T +H  
Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G    HR +F P+++L
Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254


>gi|302332850|gb|ADL23043.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 255

 Score =  145 bits (365), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +++E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAFAFGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP    ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ + GY T +H  
Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G    HR +F P+++L
Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254


>gi|222100634|ref|YP_002535202.1| Ribonuclease [Thermotoga neapolitana DSM 4359]
 gi|221573024|gb|ACM23836.1| Ribonuclease [Thermotoga neapolitana DSM 4359]
          Length = 245

 Score =  145 bits (365), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 86/189 (45%), Positives = 112/189 (59%), Gaps = 5/189 (2%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           K    VAGIDE GRG LAGPVV AA+IL+ +     + DSK ++ K RE+L+++I   A 
Sbjct: 10  KEYGVVAGIDEAGRGCLAGPVVAAAVILEYDIEE--VCDSKLLTSKTREKLFDEIMEKAA 67

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
           + I  A+ + ID  NI  AT  A+  A+ENL V P   +IDG+ +  DL      ++ GD
Sbjct: 68  VGIGMATPEEIDLQNIFNATKMAMNRALENLPVKPSFVIIDGKGL--DLGVPGTCLVGGD 125

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
             S  I AASIIAKV RDRLM   H  YP++ F  H GY T  H   I+  G   +HR++
Sbjct: 126 RKSKLIGAASIIAKVVRDRLMEKLHDLYPEFSFHKHKGYATKDHLNEIRLHGVLPVHRMS 185

Query: 201 FRP-LRNLS 208
           FRP L NLS
Sbjct: 186 FRPVLENLS 194


>gi|89256503|ref|YP_513865.1| ribonuclease HII [Francisella tularensis subsp. holarctica LVS]
 gi|115314935|ref|YP_763658.1| ribonuclease HII [Francisella tularensis subsp. holarctica OSU18]
 gi|156502614|ref|YP_001428679.1| ribonuclease HII [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|254367835|ref|ZP_04983855.1| ribonuclease HII [Francisella tularensis subsp. holarctica 257]
 gi|290953972|ref|ZP_06558593.1| ribonuclease HII [Francisella tularensis subsp. holarctica URFT1]
 gi|295312649|ref|ZP_06803399.1| ribonuclease HII [Francisella tularensis subsp. holarctica URFT1]
 gi|122325051|sp|Q0BLL3|RNH2_FRATO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|122500629|sp|Q2A337|RNH2_FRATH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166225186|sp|A7NCM0|RNH2_FRATF RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|89144334|emb|CAJ79621.1| Ribonuclease HII [Francisella tularensis subsp. holarctica LVS]
 gi|115129834|gb|ABI83021.1| ribonuclease H [Francisella tularensis subsp. holarctica OSU18]
 gi|134253645|gb|EBA52739.1| ribonuclease HII [Francisella tularensis subsp. holarctica 257]
 gi|156253217|gb|ABU61723.1| ribonuclease HII [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 187

 Score =  145 bits (365), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 81/183 (44%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84
           + GIDE GRG L+GPVV A +ILD + I  G+ DSKK++ KKR+ LY++I T +   +I 
Sbjct: 3   ILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYTIV 62

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S Q ID+ NI +ATL AI+    NL+      L+DG  +P +    + A++KGDS  +
Sbjct: 63  EISPQQIDELNILQATLKAIHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSKII 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD +     + YP YGF  H GYPT +H + IK+ G   IHR +++P+
Sbjct: 122 EISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYKPV 181

Query: 205 RNL 207
           + L
Sbjct: 182 QVL 184


>gi|194335200|ref|YP_002016994.1| Ribonuclease H [Pelodictyon phaeoclathratiforme BU-1]
 gi|238693361|sp|B4SAK8|RNH2_PELPB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|194307677|gb|ACF42377.1| Ribonuclease H [Pelodictyon phaeoclathratiforme BU-1]
          Length = 206

 Score =  145 bits (365), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 87/198 (43%), Positives = 113/198 (57%), Gaps = 14/198 (7%)

Query: 24  WP-------VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-----INDSKKISHKKREEL 71
           WP       V GIDE GRG LAGPVV AA+I      P G     +NDSKK+S  +RE L
Sbjct: 7   WPLWQTTALVCGIDEAGRGPLAGPVVAAAVIFPRWFRPVGTILERVNDSKKLSAAERELL 66

Query: 72  YEKI-TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
              I  ++A  +++    + ID+ NI +AT+ A+  AV  L + P   L+DG     +LP
Sbjct: 67  APAIRNAAAFWAVAEVDPETIDQINILQATMLAMNQAVAALPIQPELLLVDGNRFRTELP 126

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                V+KGDS   SIAAAS++AK  RD LM     +YP YGF+ HVGYPT  H + I++
Sbjct: 127 IPYETVVKGDSKVFSIAAASVLAKTHRDELMVAYASEYPQYGFERHVGYPTRAHVEAIRQ 186

Query: 191 KGPSCIHRLTFRPLRNLS 208
            G   IHR +FR LR L 
Sbjct: 187 HGRCPIHRQSFR-LRQLG 203


>gi|323441022|gb|EGA98729.1| ribonuclease HII [Staphylococcus aureus O11]
 gi|323442339|gb|EGA99969.1| ribonuclease HII [Staphylococcus aureus O46]
          Length = 255

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +++E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAFAFGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP    ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ + GY T +H  
Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G    HR +F P+++L
Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254


>gi|311105997|ref|YP_003978850.1| ribonuclease HII [Achromobacter xylosoxidans A8]
 gi|310760686|gb|ADP16135.1| ribonuclease HII [Achromobacter xylosoxidans A8]
          Length = 202

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 89/205 (43%), Positives = 120/205 (58%), Gaps = 16/205 (7%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           PE+P     AMV        AG+DE GRG LAG V  AA+IL+P     G+ DSK +   
Sbjct: 10  PEQP-----AMV-------TAGVDEAGRGPLAGAVYAAAVILNPARPIAGLADSKVLKAA 57

Query: 67  KREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
            RE L  +I   S    I+SAS   ID  NI +AT+ A+  AV+ L  +P+ AL+DG   
Sbjct: 58  TREALALEIQEFSLAWCIASASVAEIDSMNILRATMLAMQRAVQGLSTMPQLALVDGNQA 117

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR-LMRIAHKKYPDYGFDSHVGYPTAKH 184
           P+ L C    VIKGD++  +I+AASI+AK  RD  L+R+ H  YP Y FD H GY TA H
Sbjct: 118 PK-LGCTVQTVIKGDALVPAISAASILAKTARDADLLRL-HALYPQYAFDQHKGYGTALH 175

Query: 185 QQVIKEKGPSCIHRLTFRPLRNLSV 209
            ++++E GP   HR +F P++  S+
Sbjct: 176 LEMLREHGPCAEHRRSFAPIKAFSL 200


>gi|294781869|ref|ZP_06747201.1| ribonuclease HII [Fusobacterium sp. 1_1_41FAA]
 gi|294481680|gb|EFG29449.1| ribonuclease HII [Fusobacterium sp. 1_1_41FAA]
          Length = 217

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 116/183 (63%), Gaps = 7/183 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84
           V G+DE GRG LAGPVV AA+IL   +     INDSKK++ KKRE+LY+ I ++  +++ 
Sbjct: 15  VIGVDEAGRGPLAGPVVAAAVILKQYSEELDEINDSKKLTEKKREKLYDIILNNFNVAVG 74

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPCQAFAVIKG 139
            AS + IDK NI  A   A+  A+++L+    +      L+DG    ++   + F ++KG
Sbjct: 75  IASVEEIDKLNILNADFLAMRRALKDLEKFYETKKDYIVLVDGNLKIKEYEGKQFPIVKG 134

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHR 198
           D+ SLSIAAASIIAKVTRDR+M+    KYPDY F+ + GY T KH + IK KG    IHR
Sbjct: 135 DAKSLSIAAASIIAKVTRDRIMKDLGLKYPDYDFEKNKGYGTKKHVEAIKTKGVLKNIHR 194

Query: 199 LTF 201
             F
Sbjct: 195 KVF 197


>gi|55820934|ref|YP_139376.1| ribonuclease HII [Streptococcus thermophilus LMG 18311]
 gi|55822856|ref|YP_141297.1| ribonuclease HII [Streptococcus thermophilus CNRZ1066]
 gi|81559468|sp|Q5M021|RNH2_STRT1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|81560665|sp|Q5M4N6|RNH2_STRT2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|55736919|gb|AAV60561.1| ribonuclease HII [Streptococcus thermophilus LMG 18311]
 gi|55738841|gb|AAV62482.1| ribonuclease HII [Streptococcus thermophilus CNRZ1066]
          Length = 260

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 81/183 (44%), Positives = 116/183 (63%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG LAGPVV AA+IL       G+NDSKKI   K E +Y ++   A+ + I 
Sbjct: 77  IAGVDEVGRGPLAGPVVAAAVILPKLCKIKGLNDSKKIPKSKHEAIYNQVMKEAVAVGIG 136

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
              +  ID  NI++AT  A+  A+E L   P   LID  ++  DLP +  ++IKGD+ SL
Sbjct: 137 IKDNYVIDDVNIYEATKLAMIEAIEKLNPQPEHLLIDAMNL--DLPIEQTSIIKGDANSL 194

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASI+AKVTRD++M    +++P Y F  + GY T +H   I + G + IHR +F P+
Sbjct: 195 SIAAASIVAKVTRDKMMADYEQEFPGYAFAKNAGYGTKEHLSGIDKFGVTPIHRRSFEPI 254

Query: 205 RNL 207
           +++
Sbjct: 255 KSI 257


>gi|325923964|ref|ZP_08185553.1| RNase HII [Xanthomonas gardneri ATCC 19865]
 gi|325545547|gb|EGD16812.1| RNase HII [Xanthomonas gardneri ATCC 19865]
          Length = 242

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 80/182 (43%), Positives = 118/182 (64%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII-SI 83
           +AG+DE GRG LAGPV VAA++ DP+     G++DSK+++ ++RE+ Y +I   A+  S+
Sbjct: 33  IAGVDEAGRGPLAGPVAVAAVVFDPSKPRINGLDDSKQLTAERREQAYARIVERALAWSV 92

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
                + ID+ NI++AT+  +  AVE +  +   A IDG  +P+ LPC A A+I GD++ 
Sbjct: 93  VLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALD 152

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I AASI+AKVTRDRLM   H ++P+Y FD H GY T  H   ++  GP   HR +F P
Sbjct: 153 RAIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYATPVHLAALQTHGPCPQHRRSFAP 212

Query: 204 LR 205
           +R
Sbjct: 213 VR 214


>gi|225848014|ref|YP_002728177.1| ribonuclease HII [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644327|gb|ACN99377.1| ribonuclease HII [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 193

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 79/190 (41%), Positives = 117/190 (61%), Gaps = 3/190 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
           LE  + +     + GIDE GRG +AGP+V++A+I   N  PF   DSKK+S K+R+ LY 
Sbjct: 4   LEKKIYKNGYKYIVGIDEAGRGPIAGPLVISAVIFKYNQKPFVYADSKKLSPKERDSLYN 63

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I  +A+  SI    ++ ID   I  A  + IY A+E L + P  A++D  +I  DL   
Sbjct: 64  EILENALDYSIVVVDNEKIDSLGISSALKEGIYKAIEKLYIKPDYAILDFINI--DLDFD 121

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
           + ++ K D +S ++AAASI++K+TRDR+M    K YP++ FD H GYPT +H Q IK  G
Sbjct: 122 SISIPKADEVSHTVAAASILSKITRDRIMEDYSKIYPNFSFDKHKGYPTKQHYQEIKMYG 181

Query: 193 PSCIHRLTFR 202
            + IHR ++R
Sbjct: 182 ITPIHRKSYR 191


>gi|225389108|ref|ZP_03758832.1| hypothetical protein CLOSTASPAR_02854 [Clostridium asparagiforme
           DSM 15981]
 gi|225044826|gb|EEG55072.1| hypothetical protein CLOSTASPAR_02854 [Clostridium asparagiforme
           DSM 15981]
          Length = 217

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 89/205 (43%), Positives = 119/205 (58%), Gaps = 8/205 (3%)

Query: 8   ERPHFELEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           E+    LE M   +N +     + GIDE GRG LAGPV   A+IL  +     +NDSKK+
Sbjct: 11  EKELARLEQMREYENTYAACAMICGIDEAGRGPLAGPVAAGAVILPKDCTLLHLNDSKKL 70

Query: 64  SHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           S K+REEL+ +I   A+   +     + ID+ NI +AT +A+  A+  L V P   L D 
Sbjct: 71  SEKRREELFVQIKEQAVAWCVGIVGPERIDEINILQATYEAMRQAIAGLGVKPDILLNDA 130

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
             IP  +      +IKGD+ S+SIAAASI+AKVTRD +M    + +PDY F  H GY TA
Sbjct: 131 VEIP-GVDIMQVPIIKGDAKSVSIAAASILAKVTRDHMMAEYDQLFPDYSFAKHKGYGTA 189

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207
            H Q IKE GP  IHR +F  +RN+
Sbjct: 190 AHIQAIKELGPCPIHRRSF--IRNI 212


>gi|149196242|ref|ZP_01873297.1| ribonuclease HII [Lentisphaera araneosa HTCC2155]
 gi|149140503|gb|EDM28901.1| ribonuclease HII [Lentisphaera araneosa HTCC2155]
          Length = 209

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 84/204 (41%), Positives = 122/204 (59%), Gaps = 4/204 (1%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKIS 64
           +PE   F  E   R      + G+DEVGRG LAGPVV A  I+    + P G++DSKK+S
Sbjct: 1   MPEPDMFFFEEHYRLLGFQAIGGVDEVGRGPLAGPVVAACCIIREGVVLPEGVDDSKKLS 60

Query: 65  HKKREELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
            KKR  +Y+++     +  ++     + ID+ NI +A+  A+  AV+ ++V P   LIDG
Sbjct: 61  RKKRRLIYDQLLEVEGVNYALGIVEAEEIDEINILQASHLAMRKAVKAMKVKPDYLLIDG 120

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
             +P      + +++KGDS S+SIAAASI+AK  RD LM    KKYP+YGF+ H+GY T 
Sbjct: 121 LPVP-GFEQDSRSIVKGDSRSVSIAAASILAKEFRDDLMIEYSKKYPEYGFEKHMGYGTK 179

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRN 206
            H + +K  GP  +HR +F P+R 
Sbjct: 180 LHMEALKNCGPCPLHRRSFAPVRK 203


>gi|312278270|gb|ADQ62927.1| Ribonuclease HII [Streptococcus thermophilus ND03]
          Length = 255

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 81/183 (44%), Positives = 116/183 (63%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG LAGPVV AA+IL       G+NDSKKI   K E +Y ++   A+ + I 
Sbjct: 72  IAGVDEVGRGPLAGPVVAAAVILPKLCKIKGLNDSKKIPKSKHEAIYNQVMKEAVAVGIG 131

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
              +  ID  NI++AT  A+  A+E L   P   LID  ++  DLP +  ++IKGD+ SL
Sbjct: 132 IKDNYVIDDVNIYEATKLAMIEAIEKLNPQPEHLLIDAMNL--DLPIEQTSIIKGDANSL 189

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASI+AKVTRD++M    +++P Y F  + GY T +H   I + G + IHR +F P+
Sbjct: 190 SIAAASIVAKVTRDKMMADYEQEFPGYAFAKNAGYGTKEHLSGIDKFGVTPIHRRSFEPI 249

Query: 205 RNL 207
           +++
Sbjct: 250 KSI 252


>gi|225077059|ref|ZP_03720258.1| hypothetical protein NEIFLAOT_02112 [Neisseria flavescens
           NRL30031/H210]
 gi|224951616|gb|EEG32825.1| hypothetical protein NEIFLAOT_02112 [Neisseria flavescens
           NRL30031/H210]
          Length = 230

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 111/183 (60%), Gaps = 3/183 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           AG+DE GRG L G V  AA+IL  + ++P G+ DSKK+S KKR+ L + I   A+  SI+
Sbjct: 40  AGVDEAGRGPLVGSVFAAAVILPEHFDLP-GLTDSKKLSEKKRDMLAQMIKEQAVAWSIA 98

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    I K NI  AT+ A+  AVE L V P    IDG  +P+DL   A AV+KGDS  +
Sbjct: 99  FADPDEILKLNILHATMAAMKRAVEGLSVAPDKVWIDGNRVPKDLNVPAEAVVKGDSKII 158

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AAS++AK  RD  M    K+YP YGFD H GY TA+H   +K+ G    HR  F P+
Sbjct: 159 EISAASVLAKTARDAEMYELAKRYPQYGFDRHKGYGTAQHLAALKQYGVLLEHRRDFAPV 218

Query: 205 RNL 207
           + L
Sbjct: 219 KTL 221


>gi|225568157|ref|ZP_03777182.1| hypothetical protein CLOHYLEM_04231 [Clostridium hylemonae DSM
           15053]
 gi|225163110|gb|EEG75729.1| hypothetical protein CLOHYLEM_04231 [Clostridium hylemonae DSM
           15053]
          Length = 219

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 90/185 (48%), Positives = 115/185 (62%), Gaps = 3/185 (1%)

Query: 19  REKNMWP-VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77
           +E  M+  + GIDEVGRG LAGPVV  A+IL  ++    +NDSKK+S KKRE LY++I  
Sbjct: 31  KEYGMYRYICGIDEVGRGPLAGPVVAGAVILPKDDPVLYLNDSKKLSEKKREMLYDEIME 90

Query: 78  SAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136
            A+ + I     Q ID+ NI +AT +A+  A+ +L V P   L D  +IP  +      +
Sbjct: 91  KAVATGIGIVGPQRIDEINILQATYEAMRMAIADLPVQPDILLNDAVTIP-GVEILQVPI 149

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           IKGD+ S+SIAAASIIAKVTRDRLM    K  P Y   S+ GY T  H   +KE GPS I
Sbjct: 150 IKGDAKSVSIAAASIIAKVTRDRLMVEYDKILPGYDLASNKGYGTKAHIAGLKEHGPSPI 209

Query: 197 HRLTF 201
           HR TF
Sbjct: 210 HRATF 214


>gi|116627722|ref|YP_820341.1| ribonuclease HII [Streptococcus thermophilus LMD-9]
 gi|122267681|sp|Q03KX7|RNH2_STRTD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|116100999|gb|ABJ66145.1| RNase HII [Streptococcus thermophilus LMD-9]
          Length = 255

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 81/183 (44%), Positives = 116/183 (63%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG LAGPVV AA+IL       G+NDSKKI   K E +Y ++   A+ + I 
Sbjct: 72  IAGVDEVGRGPLAGPVVAAAVILPKLCKIKGLNDSKKIPKSKHEAIYNQVMKEAVAVGIG 131

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
              +  ID  NI++AT  A+  A+E L   P   LID  ++  DLP +  ++IKGD+ SL
Sbjct: 132 IKDNYVIDDVNIYEATKLAMIEAIEKLNPQPEHLLIDAMNL--DLPIEQTSIIKGDANSL 189

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASI+AKVTRD++M    +++P Y F  + GY T +H   I + G + IHR +F P+
Sbjct: 190 SIAAASIVAKVTRDKMMADYEQEFPGYAFAKNAGYGTKEHLSGIDKFGVTPIHRRSFEPI 249

Query: 205 RNL 207
           +++
Sbjct: 250 KSI 252


>gi|114321001|ref|YP_742684.1| RNase HII [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311401|sp|Q0A7J3|RNH2_ALHEH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|114227395|gb|ABI57194.1| RNase HII [Alkalilimnicola ehrlichii MLHE-1]
          Length = 198

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 84/182 (46%), Positives = 116/182 (63%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG LAG VV AA+ILDP+    G+ DSK++S  +R EL  +I + A+ +S+ 
Sbjct: 14  LAGVDEVGRGPLAGAVVAAAVILDPDRPIAGLRDSKRLSAARRSELDRRIRAQALAVSLG 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI +A++ A+  AV  L   P  AL+DG   P  LPC A A++KGD    
Sbjct: 74  RAEVAEIDRLNILQASMLAMQRAVAGLDPAPVQALVDGNRAPA-LPCPAQAIVKGDDRVP 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AK  RD  MR   ++YP YGF+ H+GYPT +H Q ++  G    HR +F P+
Sbjct: 133 AIAAASILAKQARDAEMRALAEQYPGYGFERHMGYPTTEHLQALRTLGACPAHRRSFAPV 192

Query: 205 RN 206
           R 
Sbjct: 193 RR 194


>gi|85860168|ref|YP_462370.1| ribonuclease HII [Syntrophus aciditrophicus SB]
 gi|97189377|sp|Q2LVU5|RNH2_SYNAS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|85723259|gb|ABC78202.1| ribonuclease HII [Syntrophus aciditrophicus SB]
          Length = 212

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 88/195 (45%), Positives = 120/195 (61%), Gaps = 8/195 (4%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           HFE EA   E     +AG+DE GRG LAGPVV AA+IL        I DSKK+S  KRE+
Sbjct: 6   HFEREAY--EDGYRVIAGVDEAGRGPLAGPVVAAAVILPHGYSHPEITDSKKLSAGKREK 63

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG--RSIPE 127
           LYE I   A+ I +       ID+ NI +ATL A+  AV++L + P   L+DG  R    
Sbjct: 64  LYEVIKRDALAIGVGVVESPVIDQVNILRATLRAMAEAVDDLSIRPDFLLVDGLHRIF-- 121

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            L      ++KGD++S+SIA+ASIIAKV+RDR+M I H+++P Y F  + GY T +H++ 
Sbjct: 122 -LNISQKTIVKGDTLSVSIASASIIAKVSRDRIMEIYHRQFPQYNFLKNKGYGTREHREA 180

Query: 188 IKEKGPSCIHRLTFR 202
           I+  G   IHR +F+
Sbjct: 181 IQNFGFCKIHRRSFK 195


>gi|208779943|ref|ZP_03247287.1| ribonuclease HII [Francisella novicida FTG]
 gi|208744398|gb|EDZ90698.1| ribonuclease HII [Francisella novicida FTG]
          Length = 187

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 80/183 (43%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84
           + GIDE GRG L+GPVV A +ILD + I  G+ DSKK++ KKR+ LY++I T +   +I 
Sbjct: 3   ILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYTIV 62

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S Q ID+ NI +ATL A++    NL+      L+DG  +P +    + A++KGDS  +
Sbjct: 63  EISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSKII 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD +     + YP YGF  H GYPT +H + IK+ G   IHR +++P+
Sbjct: 122 EISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYKPV 181

Query: 205 RNL 207
           + L
Sbjct: 182 QML 184


>gi|42523584|ref|NP_968964.1| ribonuclease HII (RNase HII) [Bdellovibrio bacteriovorus HD100]
 gi|81617170|sp|Q6MLA0|RNH2_BDEBA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|39575790|emb|CAE79957.1| ribonuclease HII (RNase HII) [Bdellovibrio bacteriovorus HD100]
          Length = 221

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 83/178 (46%), Positives = 109/178 (61%), Gaps = 1/178 (0%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           P+ G+DEVGRG LAGPV  AA+I   + +   + DSK +S K+REEL + I    I+ I 
Sbjct: 37  PIIGVDEVGRGCLAGPVYAAAVIFKSDALNDLVTDSKLLSEKRREELADLILKEHIVGIG 96

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLPCQAFAVIKGDSIS 143
           SAS + ID+ NI  A+L A+  AVE L V     L+DG + IP     +   ++KGD   
Sbjct: 97  SASVEEIDEINILNASLLAMKRAVEKLGVKSGHVLVDGNKKIPNLKGFEQSTIVKGDLRV 156

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             I+AASI+AKVTRDRLM+    KYP YGF+ H GY T  H+Q I + GP   HR +F
Sbjct: 157 APISAASIVAKVTRDRLMKDLGVKYPHYGFEIHKGYSTPVHKQSIVDHGPCIAHRRSF 214


>gi|323489566|ref|ZP_08094793.1| ribonuclease HII [Planococcus donghaensis MPA1U2]
 gi|323396697|gb|EGA89516.1| ribonuclease HII [Planococcus donghaensis MPA1U2]
          Length = 259

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 86/192 (44%), Positives = 118/192 (61%), Gaps = 6/192 (3%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKIT 76
           R++++  VAGIDE GRG LAGPVV AA+IL P +     G++DSK++S  KR+EL   I 
Sbjct: 64  RKESVDLVAGIDEAGRGPLAGPVVTAAVIL-PEDCSSLIGLDDSKQLSKAKRDELAITIK 122

Query: 77  SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135
             AI  ++   S + ID+ NI++AT  ++  A   L   P   L D   +  +LP    +
Sbjct: 123 KFAISYAVHVQSPEEIDRLNIYQATKSSMTEAARALTPAPDIVLADAMML--ELPMTCES 180

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           +IKGD+ SLSIAAASI+AK  RD LM     +YP YGF+ H GY T +H   ++E GP  
Sbjct: 181 IIKGDAKSLSIAAASILAKTGRDALMTEYAVQYPQYGFEKHAGYGTKEHVAALQEYGPCE 240

Query: 196 IHRLTFRPLRNL 207
           IHR TF P++ L
Sbjct: 241 IHRKTFEPIKTL 252


>gi|253733518|ref|ZP_04867683.1| ribonuclease HII [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728572|gb|EES97301.1| ribonuclease HII [Staphylococcus aureus subsp. aureus TCH130]
          Length = 255

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +++E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAFAYGIATSEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP    ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ + GY T +H  
Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G    HR +F P+++L
Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254


>gi|253731863|ref|ZP_04866028.1| ribonuclease HII [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724273|gb|EES93002.1| ribonuclease HII [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 255

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +++E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP    ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ + GY T +H  
Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKNYPEYGFEKNAGYGTKQHLL 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G    HR +F P+++L
Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254


>gi|254374688|ref|ZP_04990169.1| ribonuclease H [Francisella novicida GA99-3548]
 gi|151572407|gb|EDN38061.1| ribonuclease H [Francisella novicida GA99-3548]
          Length = 187

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 80/183 (43%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84
           + GIDE GRG L+GPVV A +ILD + I  G+ DSKK++ KKR+ LY++I T +   +I 
Sbjct: 3   ILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYTIV 62

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S Q ID+ NI +ATL A++    NL+      L+DG  +P +    + A++KGDS  +
Sbjct: 63  EISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWNYNSEAIVKGDSKII 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD +     + YP YGF  H GYPT +H + IK+ G   IHR +++P+
Sbjct: 122 EISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYKPV 181

Query: 205 RNL 207
           + L
Sbjct: 182 QML 184


>gi|271963370|ref|YP_003337566.1| ribonuclease H [Streptosporangium roseum DSM 43021]
 gi|270506545|gb|ACZ84823.1| Ribonuclease H [Streptosporangium roseum DSM 43021]
          Length = 228

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 115/191 (60%), Gaps = 4/191 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +  E  +  + + PVAG+DE GRGA AGP+VVAA++L    I  G++DSK ++  +RE L
Sbjct: 19  YGYERALARRGLGPVAGVDEAGRGACAGPLVVAAVVLG-RRID-GLSDSKLLTAARRESL 76

Query: 72  YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           YE+IT++A  +S+       ID   +H++ ++ +  AV  L       L DG  +P  LP
Sbjct: 77  YERITATAGAVSVVVIEPAEIDARGLHRSNIEGMRRAVARLSCDLGYVLTDGFPVP-GLP 135

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  V KGD ++  +AAASI+AKVTRDR+M     ++P+YGF  H GY T  H++ ++ 
Sbjct: 136 VPSLGVWKGDQVAACVAAASIVAKVTRDRMMTALGDRHPEYGFAVHKGYGTVGHRRALET 195

Query: 191 KGPSCIHRLTF 201
            GP   HR +F
Sbjct: 196 YGPCPAHRFSF 206


>gi|238787221|ref|ZP_04631020.1| Ribonuclease HII [Yersinia frederiksenii ATCC 33641]
 gi|238724483|gb|EEQ16124.1| Ribonuclease HII [Yersinia frederiksenii ATCC 33641]
          Length = 183

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 82/180 (45%), Positives = 110/180 (61%), Gaps = 2/180 (1%)

Query: 29  IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSAS 87
           +DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++IT  A+  S+  A 
Sbjct: 1   MDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEITDKALSWSLGRAE 60

Query: 88  HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147
            + ID  NI  AT+ A+  AV  L ++P   LIDG   P+ L   + AV+KGDS    I+
Sbjct: 61  PEEIDHLNILHATMLAMQRAVAGLHIVPDYVLIDGNRCPK-LAMPSLAVVKGDSRVAEIS 119

Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           AASI+AKVTRDR M      +P+YGF  H GYPT  H + +   G +  HR +F P++ +
Sbjct: 120 AASILAKVTRDREMTELDLHFPEYGFAQHKGYPTPVHLETLAAFGATEHHRRSFGPVKRV 179


>gi|331009297|gb|EGH89353.1| ribonuclease HII [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 217

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 88/181 (48%), Positives = 115/181 (63%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE+LY +I   A+   I+
Sbjct: 14  VAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLYVEIQEKALCWFIA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AVE L + P+ ALIDG   P+ L   +  V+KGDS   
Sbjct: 74  RAEVEEIDQLNILHATMLAMKRAVEGLSITPKLALIDGNRCPQ-LSVPSAPVVKGDSRVA 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P+
Sbjct: 133 AIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 192

Query: 205 R 205
           R
Sbjct: 193 R 193


>gi|300173225|ref|YP_003772391.1| ribonuclease HII [Leuconostoc gasicomitatum LMG 18811]
 gi|299887604|emb|CBL91572.1| ribonuclease HII [Leuconostoc gasicomitatum LMG 18811]
          Length = 254

 Score =  144 bits (363), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 87/196 (44%), Positives = 120/196 (61%), Gaps = 3/196 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F  E    ++ +  +AGIDEVGRG LAGPV+ AA+IL  +     + DSK++S KKRE L
Sbjct: 59  FSFERHYWDQGVTYIAGIDEVGRGPLAGPVIAAAVILPSDFHHIDVIDSKQLSAKKREML 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y  I   AI I +       ID  NI++A   A+  AV++L   P   LID  S+  D+P
Sbjct: 119 YHIIIEQAISIGVGIVDAATIDDINIYQAAKLAMTKAVKDLAPEPEVLLIDAMSL--DIP 176

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD++S SI AASIIAKVTRDRLM      YP YGF ++ GY T +H   +K+
Sbjct: 177 ITQESLIKGDALSNSIGAASIIAKVTRDRLMTEYSVMYPGYGFANNAGYGTKEHLDGLKK 236

Query: 191 KGPSCIHRLTFRPLRN 206
           +G + IHR +F+P+ +
Sbjct: 237 RGITPIHRQSFQPVHD 252


>gi|225630956|ref|YP_002727747.1| ribonuclease HII [Wolbachia sp. wRi]
 gi|254808008|sp|C0R4W4|RNH2_WOLWR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|225592937|gb|ACN95956.1| ribonuclease HII [Wolbachia sp. wRi]
          Length = 198

 Score =  144 bits (363), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 87/196 (44%), Positives = 122/196 (62%), Gaps = 6/196 (3%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII-LDPNNIPFGINDSKKISHKKR 68
           P F LE     K    +AG+DEVGRG LAGPV+ AA++ +D N I  GINDSKK++ + R
Sbjct: 4   PDFTLE----NKLSGVIAGVDEVGRGPLAGPVISAAVVFIDRNTIIDGINDSKKLTPQCR 59

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           + LYEKI S A   I  AS + I+ +NI +AT  ++  A+ +L +     L+DG   PE 
Sbjct: 60  QVLYEKIISVAKFGIGMASVEEINSYNILQATKLSMKRALIDLDLELDYVLVDGNQPPE- 118

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           +  Q  +++ GD++S SIAAASI+AKVTRDRLM+  H K+P+Y +  + GY T +H   I
Sbjct: 119 VKWQVKSIVNGDNLSTSIAAASIVAKVTRDRLMQELHNKHPEYNWYKNKGYGTKEHLNAI 178

Query: 189 KEKGPSCIHRLTFRPL 204
              G +  HR  F P+
Sbjct: 179 GLYGITEHHRRNFAPI 194


>gi|210615856|ref|ZP_03290818.1| hypothetical protein CLONEX_03037 [Clostridium nexile DSM 1787]
 gi|210150059|gb|EEA81068.1| hypothetical protein CLONEX_03037 [Clostridium nexile DSM 1787]
          Length = 252

 Score =  144 bits (363), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 85/177 (48%), Positives = 113/177 (63%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84
           + GIDEVGRG LAGPVV  A+IL  +     +NDSKK+S K+REELY++I   AI + I 
Sbjct: 72  ICGIDEVGRGPLAGPVVAGAVILPKDCEILYLNDSKKLSEKRREELYDEIMEKAIATGIG 131

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S   ID+ NI +AT +A+  A++ L+  P   L D  +IP  +      +IKGD+ S+
Sbjct: 132 IVSPARIDEINILQATYEAMRIAIQQLETEPDLLLNDAVTIP-GVTIDQVPIIKGDAKSV 190

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SIAAASIIAKVTRDRLM       P YGF S+ GY +A+H   +K  G + IHR++F
Sbjct: 191 SIAAASIIAKVTRDRLMVQYDDVLPGYGFASNKGYGSAEHITALKTLGATPIHRMSF 247


>gi|15827847|ref|NP_302110.1| ribonuclease HII [Mycobacterium leprae TN]
 gi|221230324|ref|YP_002503740.1| ribonuclease HII [Mycobacterium leprae Br4923]
 gi|7227915|sp|O33022|RNH2_MYCLE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807982|sp|B8ZRW3|RNH2_MYCLB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|2251163|emb|CAB10634.1| ribonuclease HII [Mycobacterium leprae]
 gi|13093399|emb|CAC30562.1| ribonuclease HII [Mycobacterium leprae]
 gi|219933431|emb|CAR71706.1| ribonuclease HII [Mycobacterium leprae Br4923]
          Length = 240

 Score =  144 bits (363), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 81/203 (39%), Positives = 115/203 (56%), Gaps = 8/203 (3%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           R  + LE  ++   + PVAG+DEVGRGA AGP+VVAA +L P  +   ++DSKK+S K R
Sbjct: 18  RGMWTLEYELQRSGLGPVAGVDEVGRGACAGPLVVAACVLGPGRLEESLDDSKKLSAKGR 77

Query: 69  EELYEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           E L+  I   A    ++ I S     +D+H +  A ++ +  AV  L V P   L DG  
Sbjct: 78  EMLFPLICRYALAYHVVFIPSVE---VDRHGVQVANIEGMRRAVAGLSVRPGYVLSDGFR 134

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +P  L   +  V+ GD++   IAAAS++AKV+RDRLM      YP YGF +H GY T  H
Sbjct: 135 VP-GLSVPSLPVVGGDAVVACIAAASVLAKVSRDRLMVAMDADYPGYGFAAHKGYCTRAH 193

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
              + + GP   HR +F  +R +
Sbjct: 194 SLALTQLGPCPEHRYSFINVRRI 216


>gi|242242528|ref|ZP_04796973.1| ribonuclease HII [Staphylococcus epidermidis W23144]
 gi|242233955|gb|EES36267.1| ribonuclease HII [Staphylococcus epidermidis W23144]
          Length = 260

 Score =  144 bits (363), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 80/183 (43%), Positives = 116/183 (63%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG LAGPVV  A+IL+ N+   G++DSKK+S K R  L + +  +    +  
Sbjct: 78  ICGIDEVGRGPLAGPVVACAVILEKNHHYIGLDDSKKVSPKNRARLNQNLKENVYQYAYG 137

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID+ NI++AT  A+  A+ +L V P   LID  ++  D+P    ++IKGD+ S+
Sbjct: 138 IASSVEIDELNIYRATQLAMLRAINHLDVTPTHLLIDAMTLDIDIP--QTSIIKGDAKSV 195

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASI+AK  RD+ MR   K++PDYGFD + GY T +H + I   G    HR +F P+
Sbjct: 196 SIAAASIMAKEYRDQYMRQLSKQFPDYGFDKNAGYGTKQHLEAIDRVGFINEHRQSFEPI 255

Query: 205 RNL 207
           +++
Sbjct: 256 KSM 258


>gi|282916494|ref|ZP_06324256.1| ribonuclease HII [Staphylococcus aureus subsp. aureus D139]
 gi|283770307|ref|ZP_06343199.1| ribonuclease HII [Staphylococcus aureus subsp. aureus H19]
 gi|282319934|gb|EFB50282.1| ribonuclease HII [Staphylococcus aureus subsp. aureus D139]
 gi|283460454|gb|EFC07544.1| ribonuclease HII [Staphylococcus aureus subsp. aureus H19]
          Length = 255

 Score =  144 bits (363), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +++E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP    ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ + GY T +H  
Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G    HR +F P+++L
Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254


>gi|126698859|ref|YP_001087756.1| ribonuclease HII [Clostridium difficile 630]
 gi|254974807|ref|ZP_05271279.1| ribonuclease HII [Clostridium difficile QCD-66c26]
 gi|255092195|ref|ZP_05321673.1| ribonuclease HII [Clostridium difficile CIP 107932]
 gi|255100280|ref|ZP_05329257.1| ribonuclease HII [Clostridium difficile QCD-63q42]
 gi|255306219|ref|ZP_05350391.1| ribonuclease HII [Clostridium difficile ATCC 43255]
 gi|255313934|ref|ZP_05355517.1| ribonuclease HII [Clostridium difficile QCD-76w55]
 gi|255516614|ref|ZP_05384290.1| ribonuclease HII [Clostridium difficile QCD-97b34]
 gi|255649714|ref|ZP_05396616.1| ribonuclease HII [Clostridium difficile QCD-37x79]
 gi|260682869|ref|YP_003214154.1| ribonuclease HII [Clostridium difficile CD196]
 gi|260686467|ref|YP_003217600.1| ribonuclease HII [Clostridium difficile R20291]
 gi|306519826|ref|ZP_07406173.1| ribonuclease HII [Clostridium difficile QCD-32g58]
 gi|123363581|sp|Q18BC9|RNH2_CLOD6 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|115250296|emb|CAJ68118.1| Ribonuclease HII (RNase HII) [Clostridium difficile]
 gi|260209032|emb|CBA62137.1| ribonuclease HII [Clostridium difficile CD196]
 gi|260212483|emb|CBE03398.1| ribonuclease HII [Clostridium difficile R20291]
          Length = 255

 Score =  144 bits (363), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 84/197 (42%), Positives = 120/197 (60%), Gaps = 6/197 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           FE E    +K    + GIDE GRG LAGPVV + ++   +    G+NDSKK+S  KR+EL
Sbjct: 63  FENEGY--DKGYLYIGGIDEAGRGPLAGPVVASVVVFKKDTKIEGVNDSKKLSEAKRDEL 120

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +E I   A+   I   +++ ID+ NI  AT  A+  A+  L+  P   L+D  +IP  + 
Sbjct: 121 FEVIKEEALDYGIGIVNNEEIDEFNILNATYMAMKKAINCLKKAPDYLLVDAATIP-GID 179

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                ++KGDS S+SIAAASI+AKVTRD +M    + YP+YGF SH GY T +H + I++
Sbjct: 180 ISQNPIVKGDSKSISIAAASILAKVTRDSIMYQYDRVYPEYGFKSHKGYGTKEHYEAIEK 239

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR +F  L+N+
Sbjct: 240 YGITPIHRKSF--LKNI 254


>gi|83647902|ref|YP_436337.1| ribonuclease HII [Hahella chejuensis KCTC 2396]
 gi|97182857|sp|Q2SBR2|RNH2_HAHCH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|83635945|gb|ABC31912.1| Ribonuclease HII [Hahella chejuensis KCTC 2396]
          Length = 204

 Score =  144 bits (363), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 88/184 (47%), Positives = 123/184 (66%), Gaps = 4/184 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG LAGPVV AA+IL+P     G+NDSKK+SH++R  L ++I   A+  +  
Sbjct: 19  VAGVDEVGRGPLAGPVVAAAVILNPEKPIEGLNDSKKLSHRQRVALSQEIREKALAWATG 78

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            A+ + ID+ NI +A+L A+  AV  LQV P  ALIDG  IP+ D+P +A  ++KGDS  
Sbjct: 79  WATVEEIDQINILQASLLAMQRAVAGLQVAPDLALIDGNKIPKLDMPAEA--IVKGDSKV 136

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV RD  +      +P YG   H GYPTA+H   ++E G + IHR +++P
Sbjct: 137 AAIAAASILAKVERDEELDRLDVIFPGYGLAGHKGYPTAQHLSALRELGVTDIHRRSYKP 196

Query: 204 LRNL 207
           ++ L
Sbjct: 197 VQQL 200


>gi|241668184|ref|ZP_04755762.1| ribonuclease HII [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876719|ref|ZP_05249429.1| ribonuclease HII [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842740|gb|EET21154.1| ribonuclease HII [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 185

 Score =  144 bits (362), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 80/183 (43%), Positives = 115/183 (62%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84
           + GIDE GRG L+GPVV A +ILDP     G++DSKK++ KKR+ LYE IT+ A   +I 
Sbjct: 3   ILGIDEAGRGPLSGPVVAAGVILDPEKTIDGLSDSKKLTEKKRQSLYEVITAHAKAYTIV 62

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S Q ID+ NI +ATL A+    +NL+      L+DG  +P +    + A++KGDS   
Sbjct: 63  EVSPQQIDQLNILQATLKAMNQVADNLKGQFDKVLVDGNKLP-NWDYNSEAIVKGDSKVQ 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD +     + +P YGF  H GYPT +H + I++ G   IHR +++P+
Sbjct: 122 EISAASILAKVHRDNICLEHDRLFPQYGFAKHKGYPTKEHLENIRKYGVLNIHRKSYKPI 181

Query: 205 RNL 207
           + L
Sbjct: 182 QLL 184


>gi|332678593|gb|AEE87722.1| Ribonuclease HII [Francisella cf. novicida Fx1]
          Length = 187

 Score =  144 bits (362), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 80/183 (43%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84
           + GIDE GRG L+GPVV A +ILD + I  G+ DSKK++ KKR+ LY++I T +   +I 
Sbjct: 3   ILGIDEAGRGPLSGPVVAAGVILDRDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYTIV 62

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S Q ID+ NI +ATL A++    NL+      L+DG  +P +    + A++KGDS  +
Sbjct: 63  EISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSKII 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD +     + YP YGF  H GYPT +H + IK+ G   IHR +++P+
Sbjct: 122 EISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYKPV 181

Query: 205 RNL 207
           + L
Sbjct: 182 QML 184


>gi|223933031|ref|ZP_03625025.1| Ribonuclease H [Streptococcus suis 89/1591]
 gi|302023800|ref|ZP_07249011.1| ribonuclease HII [Streptococcus suis 05HAS68]
 gi|330832827|ref|YP_004401652.1| ribonuclease HII [Streptococcus suis ST3]
 gi|223898348|gb|EEF64715.1| Ribonuclease H [Streptococcus suis 89/1591]
 gi|329307050|gb|AEB81466.1| ribonuclease HII [Streptococcus suis ST3]
          Length = 259

 Score =  144 bits (362), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 87/201 (43%), Positives = 123/201 (61%), Gaps = 9/201 (4%)

Query: 14  LEAMV-REKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           LEAM+  EKN++      +AGIDEVGRG LAGPVV AA+IL        +NDSKKI   K
Sbjct: 54  LEAMLFYEKNLYENGVEFIAGIDEVGRGPLAGPVVAAAVILPKGCKIRYLNDSKKIPKSK 113

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
            E +Y+++   A+ + +       ID+ NI++AT  A+  A   L   P   LID   + 
Sbjct: 114 HEAIYQEVMERAVAVGVGIKDAAVIDQVNIYEATKLAMLEAFGKLSQKPDHLLIDAMKL- 172

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            D P    ++IKGD+ SLSIAAASI+AKVTRD++M    K++  YGF  + GY TA+H +
Sbjct: 173 -DTPIPQTSIIKGDANSLSIAAASIVAKVTRDKMMADYDKEFSGYGFAKNAGYGTAEHLE 231

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            + + G + IHR TF P++++
Sbjct: 232 GLNKLGITPIHRKTFEPIKSM 252


>gi|148557468|ref|YP_001265050.1| ribonuclease H [Sphingomonas wittichii RW1]
 gi|189043662|sp|A5VF46|RNH2_SPHWW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|148502658|gb|ABQ70912.1| Ribonuclease H [Sphingomonas wittichii RW1]
          Length = 202

 Score =  144 bits (362), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 117/201 (58%), Gaps = 7/201 (3%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F+LE      +  P+AG+DE GRG LAGPVV AA+ILD   +P GI+DSKK+  + R 
Sbjct: 4   PSFDLEI----AHPLPLAGVDEAGRGPLAGPVVAAAVILDRGRVPAGIDDSKKLGAEARA 59

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-D 128
           +L  KI   A + +  A+ + ID+ NI  A++ A+  AV  L V P   L+DG   P   
Sbjct: 60  DLCGKIREVAHVGVGIATVEEIDEINILWASMLAMERAVAALGVEPAMVLVDGNRCPRWT 119

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
            P Q   VI GD++ LSIAAASI+AK  RDR+M      +P YG+  + GY T  H   +
Sbjct: 120 RPSQ--WVIGGDALCLSIAAASIVAKEERDRMMADYDVHHPGYGWAKNKGYGTPAHLDAL 177

Query: 189 KEKGPSCIHRLTFRPLRNLSV 209
              GPS +HR +F P+   S+
Sbjct: 178 ARLGPSPLHRRSFAPVAQFSL 198


>gi|294012729|ref|YP_003546189.1| ribonuclease HII [Sphingobium japonicum UT26S]
 gi|292676059|dbj|BAI97577.1| ribonuclease HII [Sphingobium japonicum UT26S]
          Length = 199

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/185 (43%), Positives = 117/185 (63%), Gaps = 2/185 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DE GRG LAGPVV AA+IL   + P G+NDSK++S  +R  L  +I + A+   + 
Sbjct: 15  VAGVDEAGRGPLAGPVVAAAVILRQEDCPEGLNDSKQLSAARRAVLEGEIKARALCWGLG 74

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID  NI  AT+ A+  AVE L       L+DG   P+     + A+++GD+  L
Sbjct: 75  VASVEEIDSINILWATMLAMTRAVEALAHDCAHVLVDGNRCPQ-WRWASTAIVEGDAKCL 133

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASI+AK  RDR+M  A   +P YG++S+ GY +A+H   ++E GP+ +HR +F P+
Sbjct: 134 SIAAASILAKEARDRMMVEAAATHPHYGWESNKGYGSARHLAALREHGPTPLHRRSFAPV 193

Query: 205 RNLSV 209
             LS+
Sbjct: 194 AQLSL 198


>gi|291563277|emb|CBL42093.1| Ribonuclease HII [butyrate-producing bacterium SS3/4]
          Length = 214

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/177 (46%), Positives = 109/177 (61%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           + GIDE GRG LAGPV   A IL  +     +NDSKK+S  +REEL+ +I   AI  S+ 
Sbjct: 34  ICGIDEAGRGPLAGPVAAGAAILPKDCRILYLNDSKKLSESRREELFLEIKEKAIAWSVG 93

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
               + ID+ NI +AT +A+  A+  L  +P+  L D  +IP  +      +IKGD+ S+
Sbjct: 94  IVGPERIDEINILQATYEAMRQAISKLDPVPQVLLNDAVTIP-GVAIPQVPIIKGDAKSV 152

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SIAAASI+AKVTRD +M    K+YP+YGF  H GY T  H   +KE GP+ IHR TF
Sbjct: 153 SIAAASILAKVTRDHMMEEYDKEYPEYGFAKHKGYGTPAHITALKEFGPTPIHRRTF 209


>gi|304440378|ref|ZP_07400267.1| ribonuclease HII [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371130|gb|EFM24747.1| ribonuclease HII [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 203

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/204 (44%), Positives = 121/204 (59%), Gaps = 12/204 (5%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            E+E    +K +  V GIDEVGRG L G VV AA+I+    IP G+NDSKK++  +R EL
Sbjct: 2   IEIEKNYYDKGLDLVCGIDEVGRGCLFGDVVAAAVIMPKTRIP-GVNDSKKLTELRRAEL 60

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL------QVIPRSALIDGRS 124
           Y+KI SS +   I       IDK NI  AT  A+  AV+NL      +V P   LID   
Sbjct: 61  YDKILSSCVAYGIGIMDSVTIDKINIKMATHLAMLLAVQNLRAKDGSKVDPNVLLIDAEH 120

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +  D+P ++  ++KGD    SIA ASI+AKV RDRL     K+YP Y  + H GY T KH
Sbjct: 121 LETDIPQES--IVKGDEKVYSIACASIVAKVYRDRLCEKWGKEYPGYEIEKHKGYGTKKH 178

Query: 185 QQVIKEKGPSCIHRLTFRPLRNLS 208
           ++++ EKGP+  HR +F  L+N+ 
Sbjct: 179 REILLEKGPTPHHRKSF--LKNME 200


>gi|118497878|ref|YP_898928.1| ribonuclease HII [Francisella tularensis subsp. novicida U112]
 gi|194323851|ref|ZP_03057627.1| ribonuclease HII [Francisella tularensis subsp. novicida FTE]
 gi|166225187|sp|A0Q7F9|RNH2_FRATN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|118423784|gb|ABK90174.1| ribonuclease HII [Francisella novicida U112]
 gi|194322215|gb|EDX19697.1| ribonuclease HII [Francisella tularensis subsp. novicida FTE]
          Length = 185

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/183 (43%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84
           + GIDE GRG L+GPVV A +ILD + I  G+ DSKK++ KKR+ LY++I T +   +I 
Sbjct: 3   ILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYTIV 62

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S Q ID+ NI +ATL A++    NL+      L+DG  +P +    + A++KGDS  +
Sbjct: 63  EISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSKII 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD +     + YP YGF  H GYPT +H + IK+ G   IHR +++P+
Sbjct: 122 EISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYKPI 181

Query: 205 RNL 207
           + L
Sbjct: 182 QLL 184


>gi|56708338|ref|YP_170234.1| ribonuclease HII [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670809|ref|YP_667366.1| ribonuclease HII [Francisella tularensis subsp. tularensis FSC198]
 gi|134301623|ref|YP_001121591.1| ribonuclease HII [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|224457462|ref|ZP_03665935.1| ribonuclease HII [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254369606|ref|ZP_04985617.1| ribonuclease H [Francisella tularensis subsp. holarctica FSC022]
 gi|254370960|ref|ZP_04986964.1| ribonuclease H [Francisella tularensis subsp. tularensis FSC033]
 gi|254875160|ref|ZP_05247870.1| ribonuclease HII [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|81597296|sp|Q5NFF8|RNH2_FRATT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|123169324|sp|Q14GW0|RNH2_FRAT1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166225188|sp|A4IX19|RNH2_FRATW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|56604830|emb|CAG45911.1| Ribonuclease HII [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110321142|emb|CAL09294.1| Ribonuclease HII [Francisella tularensis subsp. tularensis FSC198]
 gi|134049400|gb|ABO46471.1| ribonuclease HII [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|151569202|gb|EDN34856.1| ribonuclease H [Francisella tularensis subsp. tularensis FSC033]
 gi|157122560|gb|EDO66695.1| ribonuclease H [Francisella tularensis subsp. holarctica FSC022]
 gi|254841159|gb|EET19595.1| ribonuclease HII [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159575|gb|ADA78966.1| ribonuclease HII [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 187

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/183 (43%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84
           + GIDE GRG L+GPVV A +ILD + I  G+ DSKK++ KKR+ LY++I T +   +I 
Sbjct: 3   ILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYTIV 62

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S Q ID+ NI +ATL A++    NL+      L+DG  +P +    + A++KGDS  +
Sbjct: 63  EISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSKII 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD +     + YP YGF  H GYPT +H + IK+ G   IHR +++P+
Sbjct: 122 EISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYKPV 181

Query: 205 RNL 207
           + L
Sbjct: 182 QVL 184


>gi|332284293|ref|YP_004416204.1| ribonuclease HII [Pusillimonas sp. T7-7]
 gi|330428246|gb|AEC19580.1| ribonuclease HII [Pusillimonas sp. T7-7]
          Length = 220

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/183 (47%), Positives = 114/183 (62%), Gaps = 1/183 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAGIDE GRG LAGPV  AA+ILDP     G++DSKK+S  +RE L   +   A+   I+
Sbjct: 21  VAGIDEAGRGPLAGPVFAAAVILDPARPIKGLDDSKKLSPARREGLALAVREYALAWYIA 80

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SA+ + ID  NI +AT+ A+  A E L +    ALIDG  +P+ LPC A A+I GD+   
Sbjct: 81  SATVEEIDTLNILQATMLAMRRACEGLSLPLAQALIDGNRVPKGLPCAAQAIIGGDASVA 140

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AK  RD    + H+ YPDY FD H GY TA H   ++  GP   HR TF P+
Sbjct: 141 AISAASILAKTARDADCLLLHQAYPDYCFDQHKGYGTALHLARLQAYGPCPAHRRTFAPV 200

Query: 205 RNL 207
           + L
Sbjct: 201 KRL 203


>gi|332981643|ref|YP_004463084.1| Ribonuclease H [Mahella australiensis 50-1 BON]
 gi|332699321|gb|AEE96262.1| Ribonuclease H [Mahella australiensis 50-1 BON]
          Length = 191

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/177 (46%), Positives = 113/177 (63%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG LAGPV+ AA+IL       G+ DSKK++ K+R+ L++ I   A+ ++I+
Sbjct: 6   VAGVDEVGRGPLAGPVMAAAVILPAGLHIDGLRDSKKLTPKQRQYLHDIILDKALAVAIA 65

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           S  H+ ID+ NI  A L+ +  AV +L + P   ++DGR    D+     AVI GD +  
Sbjct: 66  SVDHERIDEINIRMAALEVMKQAVLSLSIQPDRVMVDGRD-TLDITIPQQAVIGGDDLVA 124

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            I+AAS++AKVTRDRLM   H KYP Y F  + GY T KH + I+E G   IHR+TF
Sbjct: 125 CISAASVVAKVTRDRLMVQYHDKYPQYDFIHNKGYGTQKHIEAIREYGICPIHRITF 181


>gi|261866967|ref|YP_003254889.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412299|gb|ACX81670.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 199

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/183 (44%), Positives = 114/183 (62%), Gaps = 1/183 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSK +S KKR  L E+I   A+  ++ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPKQPIEGLADSKTLSEKKRLLLAEEIKQKALAWALG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  A++ A+  A+++L++ P   L+DG  IP +L   A AV+KGD +  
Sbjct: 73  RAEPHEIDELNILHASMLAMERAIKHLKIRPHFVLVDGNRIPPNLMIPAQAVVKGDVLVP 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M +  KKYP Y F  H GYPT  H + ++E G    +R +F P+
Sbjct: 133 EISAASILAKVARDQEMIVLDKKYPHYAFAKHKGYPTKLHLEKLREFGVLPEYRRSFAPV 192

Query: 205 RNL 207
           + L
Sbjct: 193 KKL 195


>gi|20807898|ref|NP_623069.1| ribonuclease HII [Thermoanaerobacter tengcongensis MB4]
 gi|39932431|sp|Q8R9X9|RNH2_THETN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|20516465|gb|AAM24673.1| Ribonuclease HII [Thermoanaerobacter tengcongensis MB4]
          Length = 241

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/188 (45%), Positives = 114/188 (60%), Gaps = 2/188 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  + E+ +  +AG+DE GRG L GPVV A +IL        INDSKK+  +KRE+L E 
Sbjct: 48  EKKLYEEGLNFIAGVDEAGRGPLVGPVVAACVILPKEIFIPEINDSKKLPEEKREKLAEV 107

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI   I     + ID+ NI  ATL A+  A+  ++      L+D  SIP D+P + 
Sbjct: 108 IKKEAISYGIGIVDCREIDEINILNATLKAMKKAIFEVKEKIEYLLVDAISIP-DMPIKQ 166

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             ++KGDS S+SIAAASI+AKV RDR+MR  HK YP Y F  + GY T +H + +K+ GP
Sbjct: 167 LPIVKGDSKSISIAAASILAKVERDRIMREYHKLYPQYNFAKNKGYGTKEHIEALKKYGP 226

Query: 194 SCIHRLTF 201
             IHR T+
Sbjct: 227 CPIHRRTY 234


>gi|254373232|ref|ZP_04988721.1| ribonuclease HII [Francisella tularensis subsp. novicida GA99-3549]
 gi|151570959|gb|EDN36613.1| ribonuclease HII [Francisella novicida GA99-3549]
          Length = 185

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/183 (43%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84
           + GIDE GRG L+GPVV A +ILD + I  G+ DSKK++ KKR+ LY++I T +   +I 
Sbjct: 3   ILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYTIV 62

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S Q ID+ NI +ATL A++    NL+      L+DG  +P +    + A++KGDS  +
Sbjct: 63  EISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWNYNSEAIVKGDSKII 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD +     + YP YGF  H GYPT +H + IK+ G   IHR +++P+
Sbjct: 122 EISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYKPI 181

Query: 205 RNL 207
           + L
Sbjct: 182 QLL 184


>gi|30249669|ref|NP_841739.1| ribonuclease HII and HIII [Nitrosomonas europaea ATCC 19718]
 gi|39932358|sp|Q82U06|RNH2_NITEU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|30180706|emb|CAD85618.1| Ribonuclease HII and HIII [Nitrosomonas europaea ATCC 19718]
          Length = 217

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/184 (45%), Positives = 115/184 (62%), Gaps = 3/184 (1%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSA 86
           G+DE GRG LAGPV  A ++LDP ++  G+ DSK++S KKR  L ++I   A   +I+SA
Sbjct: 21  GVDEAGRGPLAGPVYAACVVLDPADVIEGLADSKQLSEKKRISLADQIKQRARAWAIASA 80

Query: 87  SHQYIDKHNIHKATLDAIYHAVENLQVIPRS-ALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           S + ID+ NI +A+L A+  AV +L+ I  +  L+DG   P  L C+   VI+GDS+   
Sbjct: 81  SVEEIDRLNILQASLLAMQRAVVSLRPISNALVLVDGNHAPR-LDCEVQTVIRGDSLVAE 139

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AK  RD  M   H+ YP YGFD H GYPT  H + I+  G + IHR +F P  
Sbjct: 140 ISAASILAKTARDIEMLRLHEAYPVYGFDRHKGYPTKAHLEAIRLHGITDIHRRSFAPCV 199

Query: 206 NLSV 209
             SV
Sbjct: 200 GQSV 203


>gi|283470457|emb|CAQ49668.1| ribonuclease HII (RNase HII) [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 255

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +++E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP    ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ + GY T +H  
Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKNYPEYGFEKNAGYGTKQHLL 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G    HR +F P+++L
Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254


>gi|218197065|gb|EEC79492.1| hypothetical protein OsI_20541 [Oryza sativa Indica Group]
          Length = 501

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/176 (46%), Positives = 108/176 (61%), Gaps = 2/176 (1%)

Query: 32  VGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQY 90
           VGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++I + A+  S+  A    
Sbjct: 323 VGRGPLVGAVVTAAVILDPAQPIVGLADSKKLSEKRRLALYDEIVAKALSWSLGRAEPAE 382

Query: 91  IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAAS 150
           ID+ NI  AT+ A+  AV  L + P   LIDG   P  LP ++ AV+KGDS    I+AAS
Sbjct: 383 IDQLNILHATMLAMQRAVAGLHIAPDMVLIDGNRCP-SLPMRSQAVVKGDSRVAEISAAS 441

Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           I+AKVTRDR M     ++PDYGF  H GYPTA H + +   G +  HR +F P++ 
Sbjct: 442 ILAKVTRDREMAELDSEFPDYGFAQHKGYPTAFHLERLAALGATEHHRRSFAPVKR 497


>gi|223044238|ref|ZP_03614275.1| ribonuclease HII (RNase HII) [Staphylococcus capitis SK14]
 gi|222442388|gb|EEE48496.1| ribonuclease HII (RNase HII) [Staphylococcus capitis SK14]
          Length = 256

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 120/201 (59%), Gaps = 10/201 (4%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR-- 68
           H+E E ++   N   + GIDEVGRG LAGPVV  A+IL+  +   G+NDSKK+  K+R  
Sbjct: 60  HYENE-ILNHDNEALICGIDEVGRGPLAGPVVACAVILNKGHHYLGLNDSKKVPAKQRLI 118

Query: 69  --EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
             EEL   +TS A      A+ Q ID  NI+KAT  A+  A+  L + P   LID   + 
Sbjct: 119 LNEELKNNVTSYAY---GIATPQEIDDLNIYKATQVAMQRAINQLSIQPTHLLIDAMKLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            D+P    ++IKGD+ S+SIAAASI+AK  RD  M+     YP+YGF+ +VGY T +H +
Sbjct: 176 NDIP--QISIIKGDAKSVSIAAASIMAKEYRDNYMKELANDYPNYGFEKNVGYGTKQHLE 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I   G    HR +F P++++
Sbjct: 234 AIDTFGVINEHRKSFEPIKSM 254


>gi|332530821|ref|ZP_08406747.1| ribonuclease HII [Hylemonella gracilis ATCC 19624]
 gi|332039733|gb|EGI76133.1| ribonuclease HII [Hylemonella gracilis ATCC 19624]
          Length = 196

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/187 (43%), Positives = 118/187 (63%), Gaps = 6/187 (3%)

Query: 23  MWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78
           MW     +AG+DE GRG LAGPVV AA+ILD  N   G++DSKK++  +RE LY++I + 
Sbjct: 1   MWDTPGLLAGVDEAGRGPLAGPVVAAAVILDELNPIEGLDDSKKLTAARRERLYDEIRAK 60

Query: 79  AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137
           A+  +++ AS + ID  NI +ATL A+  AV  L++ P   L+DG  +P  L   + AV+
Sbjct: 61  ALCCAVAEASVEEIDALNILQATLLAMRRAVGGLRLKPSKVLVDGNQLPR-LSVLSEAVV 119

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           +GD++  +I+AASI+AKV RDR      +++P YGF +H GY TA H   +   G    H
Sbjct: 120 RGDALVPAISAASILAKVHRDRWCLSYDREFPQYGFAAHKGYGTAVHLAALHMHGACPQH 179

Query: 198 RLTFRPL 204
           R +F P+
Sbjct: 180 RRSFAPV 186


>gi|145589618|ref|YP_001156215.1| ribonuclease H [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|189043639|sp|A4SYT7|RNH2_POLSQ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|145048024|gb|ABP34651.1| RNase HII [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 196

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/191 (46%), Positives = 116/191 (60%), Gaps = 6/191 (3%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-I 80
           NM  V G+DE GRG L G VV  A++LDP N   G+ DSKK+S  +RE LYE+I   A  
Sbjct: 2   NMIWVCGVDEAGRGPLVGAVVAGAVVLDPENPIEGLKDSKKLSAVRREFLYEQIMEKAKA 61

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQV----IPRSALIDGRSIPEDLPCQAFAV 136
             +  AS   ID  NI +AT+ A+  AVE+L       P  ALIDG   PE L   A A+
Sbjct: 62  WGVGEASPTEIDSINILQATMLAMRRAVEDLAARLGEWPSKALIDGNRCPE-LSIAAEAI 120

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           +KGD+   +I+AASI+AKVTRDR M   H+++P YGF  H+GYPT  H   +K+ G    
Sbjct: 121 VKGDTKEPAISAASIVAKVTRDRQMIALHEQHPQYGFSQHMGYPTEAHFAALKQYGVCTE 180

Query: 197 HRLTFRPLRNL 207
           HR +F P+R +
Sbjct: 181 HRKSFAPVRRV 191


>gi|94310391|ref|YP_583601.1| ribonuclease HII [Cupriavidus metallidurans CH34]
 gi|189043647|sp|Q1LNE4|RNH2_RALME RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|93354243|gb|ABF08332.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Cupriavidus
           metallidurans CH34]
          Length = 226

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/187 (43%), Positives = 120/187 (64%), Gaps = 7/187 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + G+DE GRG LAGPV  AA++L+P     G+ DSK +S +KRE L+++I   A+   I+
Sbjct: 26  LCGVDEAGRGPLAGPVYAAAVVLNPARQIRGLADSKILSAEKREALFDRICDHALGWHIA 85

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE-DLPCQAFAVIKGD 140
           SAS + ID  NI  A++ A+  AV+ L    VIP    +DG   P+   P +A  ++KGD
Sbjct: 86  SASVEEIDSINILHASMLAMQRAVQGLAASGVIPDLVQVDGNRCPQVAFPVEA--IVKGD 143

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           +   +I+AASI+AKV RDR +   H++YP+YGFDSH GYPT +H   +++ G +  HR +
Sbjct: 144 AKVRAISAASILAKVARDRELLKLHQEYPEYGFDSHFGYPTPQHFTALEQFGATPHHRRS 203

Query: 201 FRPLRNL 207
           F P+R +
Sbjct: 204 FAPVRKV 210


>gi|220931581|ref|YP_002508489.1| Ribonuclease H [Halothermothrix orenii H 168]
 gi|219992891|gb|ACL69494.1| Ribonuclease H [Halothermothrix orenii H 168]
          Length = 308

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/181 (46%), Positives = 119/181 (65%), Gaps = 1/181 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DE GRG LAGPVV AA++  P     G++DSKK++ K+RE L+E+I   A+ I + 
Sbjct: 75  IAGVDEAGRGPLAGPVVAAAVVFKPETKVLGLDDSKKLTAKERETLFEEIYDRALSIGVG 134

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
              ++ IDK NI  A+L A+  A+++L       LIDG++   +L  +  AVI GD+   
Sbjct: 135 IVDNKDIDKLNILNASLKAMKKALDSLSCPVDYILIDGKNKLSELNIKQQAVIDGDNKVN 194

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            IAAASIIAKVTRDR++   HKKYP+YGF ++ GY T +H + +K  GPS IHR +F  +
Sbjct: 195 VIAAASIIAKVTRDRILDKLHKKYPEYGFINNKGYGTREHIEALKAYGPSPIHRYSFSLV 254

Query: 205 R 205
           R
Sbjct: 255 R 255


>gi|307107517|gb|EFN55760.1| hypothetical protein CHLNCDRAFT_23163 [Chlorella variabilis]
          Length = 311

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/198 (40%), Positives = 115/198 (58%), Gaps = 6/198 (3%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P  E E  + ++    VAG+DE GRG LAGPVV AA ++  +    G++DSKK+S ++RE
Sbjct: 80  PSREFERELWQQGYARVAGVDEAGRGPLAGPVVAAACVVPEHVDIAGMDDSKKLSAQQRE 139

Query: 70  ELYEKITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
            LY ++T     + +      + ID  NI +A L A+  A   L   P   L+DG  +P+
Sbjct: 140 ALYAQLTGHPDVLWAACVVEAEEIDAINILQAALKAMEGAAAGLTAQPDFLLVDGNRLPK 199

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
               ++  ++KGDS S  IAAAS+IAKVTRDRLM   H+ +P Y F  H GY   +H + 
Sbjct: 200 ----RSRPIVKGDSKSYCIAAASVIAKVTRDRLMEQHHEHWPQYNFAGHKGYCVPEHVEA 255

Query: 188 IKEKGPSCIHRLTFRPLR 205
           I++ GP  +HR TF P R
Sbjct: 256 IRQHGPCPVHRRTFAPTR 273


>gi|298694537|gb|ADI97759.1| ribonuclease HII [Staphylococcus aureus subsp. aureus ED133]
          Length = 255

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +++E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAYAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP    ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ + GY T +H  
Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G    HR +F P+++L
Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254


>gi|254479478|ref|ZP_05092803.1| ribonuclease HII [Carboxydibrachium pacificum DSM 12653]
 gi|214034582|gb|EEB75331.1| ribonuclease HII [Carboxydibrachium pacificum DSM 12653]
          Length = 236

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/188 (45%), Positives = 114/188 (60%), Gaps = 2/188 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  + E+ +  +AG+DE GRG L GPVV A +IL        INDSKK+  +KRE+L E 
Sbjct: 43  EKKLYEEGLNFIAGVDEAGRGPLVGPVVAACVILPKEIFIPEINDSKKLPEEKREKLAEV 102

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI   I     + ID+ NI  ATL A+  A+  ++      L+D  SIP D+P + 
Sbjct: 103 IKKEAISYGIGIVDCREIDEINILNATLKAMKKAIFEVKEKIEYLLVDAISIP-DMPIKQ 161

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             ++KGDS S+SIAAASI+AKV RDR+MR  HK YP Y F  + GY T +H + +K+ GP
Sbjct: 162 LPIVKGDSKSISIAAASILAKVERDRIMREYHKLYPQYNFAKNKGYGTKEHIEALKKHGP 221

Query: 194 SCIHRLTF 201
             IHR T+
Sbjct: 222 CPIHRRTY 229


>gi|329733653|gb|EGG69981.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 21193]
          Length = 255

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +++E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP    ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ + GY T +H  
Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKNYPEYGFEKNAGYGTKQHLL 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G    HR +F P+++L
Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254


>gi|94990506|ref|YP_598606.1| ribonuclease HII [Streptococcus pyogenes MGAS10270]
 gi|166226660|sp|Q1JGT2|RNH2_STRPD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|94544014|gb|ABF34062.1| Ribonuclease HII [Streptococcus pyogenes MGAS10270]
          Length = 263

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/204 (42%), Positives = 127/204 (62%), Gaps = 12/204 (5%)

Query: 14  LEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           LEAM+  EK ++      +AGIDEVGRG LAGPVV A +IL  +    G+NDSKKI   K
Sbjct: 55  LEAMLSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKSK 114

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR 123
            E +Y+ +   A+ I I    +Q ID+ NI++AT  A+  A++ L+     P   LID  
Sbjct: 115 HETIYQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAM 174

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           ++  D+     +++KGD+ SLSIAAASI+AKVTRD++M    + +P YGF  + GY T +
Sbjct: 175 TL--DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKE 232

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H Q +K  G + IHR +F P++++
Sbjct: 233 HLQGLKAYGITPIHRKSFEPVKSM 256


>gi|218782471|ref|YP_002433789.1| ribonuclease H [Desulfatibacillum alkenivorans AK-01]
 gi|218763855|gb|ACL06321.1| Ribonuclease H [Desulfatibacillum alkenivorans AK-01]
          Length = 224

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/193 (46%), Positives = 118/193 (61%), Gaps = 6/193 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           FE EA   +K    +AG+DE GRG LAGPVV AA++L  N    G++DSKK++ KKR+ L
Sbjct: 26  FENEA--HKKGYTRIAGVDEAGRGPLAGPVVSAAVVLPGNADLPGVDDSKKLTPKKRDAL 83

Query: 72  YEKITSSAIISISSASHQY-IDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPEDL 129
           +E I   AI           ID+ NI +A+L ++  +VENL+  P   LIDG   I   L
Sbjct: 84  FESIYEQAIGIGIGIIDPVEIDRINILQASLLSMLVSVENLEPAPDYLLIDGPFGIKSFL 143

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +  GDS+S+SIAAASI+AKVTRDRLM    +++P +GF  H GY T  H++ I 
Sbjct: 144 PQTP--IKHGDSLSISIAAASIVAKVTRDRLMERYDQEFPAFGFAKHKGYGTKAHREAIS 201

Query: 190 EKGPSCIHRLTFR 202
             GP  IHR +FR
Sbjct: 202 LNGPCSIHRFSFR 214


>gi|21910354|ref|NP_664622.1| ribonuclease HII [Streptococcus pyogenes MGAS315]
 gi|28895931|ref|NP_802281.1| ribonuclease HII [Streptococcus pyogenes SSI-1]
 gi|32171668|sp|Q8K7G7|RNH2_STRP3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|21904551|gb|AAM79425.1| putative ribonuclease HII [Streptococcus pyogenes MGAS315]
 gi|28811181|dbj|BAC64114.1| putative ribonuclease HII [Streptococcus pyogenes SSI-1]
          Length = 263

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/204 (42%), Positives = 127/204 (62%), Gaps = 12/204 (5%)

Query: 14  LEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           LEAM+  EK ++      +AGIDEVGRG LAGPVV A +IL  +    G+NDSKKI   K
Sbjct: 55  LEAMLSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKAK 114

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR 123
            E +Y+ +   A+ I I    +Q ID+ NI++AT  A+  A++ L+     P   LID  
Sbjct: 115 HETIYQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAM 174

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           ++  D+     +++KGD+ SLSIAAASI+AKVTRD++M    + +P YGF  + GY T +
Sbjct: 175 TL--DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKE 232

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H Q +K  G + IHR +F P++++
Sbjct: 233 HLQELKAYGITPIHRKSFEPVKSM 256


>gi|288818751|ref|YP_003433099.1| ribonuclease HII [Hydrogenobacter thermophilus TK-6]
 gi|288788151|dbj|BAI69898.1| ribonuclease HII [Hydrogenobacter thermophilus TK-6]
 gi|308752338|gb|ADO45821.1| Ribonuclease H [Hydrogenobacter thermophilus TK-6]
          Length = 198

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/194 (45%), Positives = 116/194 (59%), Gaps = 5/194 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E    EK +  VAG+DE GRG LAGPVV  A+IL P   PF   DSK++S ++REE Y
Sbjct: 3   EYELPFWEKGLL-VAGVDEAGRGPLAGPVVACALILPPFTEPFIDRDSKRMSAREREEAY 61

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E I S AI I  +      ID+ NIH+A   A+  A+E+L+  P   +I      E   C
Sbjct: 62  ELIKSKAIAIGTAVVDSVVIDRINIHRAVKLAMKRALEDLKH-PFDVVITDFVKLEGYNC 120

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               ++KGD  SLS A AS++AKV RDR+M   HK +P Y F  H GYPT +H+++IK  
Sbjct: 121 --LPLVKGDEKSLSCACASVVAKVLRDRIMEHYHKVFPQYEFAQHKGYPTRRHRELIKTY 178

Query: 192 GPSCIHRLTFRPLR 205
           G + IHR +F+ LR
Sbjct: 179 GFTEIHRRSFKTLR 192


>gi|261379547|ref|ZP_05984120.1| ribonuclease HII [Neisseria subflava NJ9703]
 gi|284798018|gb|EFC53365.1| ribonuclease HII [Neisseria subflava NJ9703]
          Length = 208

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/183 (45%), Positives = 111/183 (60%), Gaps = 3/183 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           AG+DE GRG L G V  AA+IL  + ++P G+ DSKK+S KKR+ L + I   A+  SI+
Sbjct: 18  AGVDEAGRGPLVGSVFAAAVILPEHFDLP-GLTDSKKLSEKKRDMLAQMIKEQAVAWSIA 76

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    I + NI  AT+ A+  AVE L V P    IDG  +P+DL   A AV+KGDS  +
Sbjct: 77  FADPDEILQLNILHATMAAMKRAVEGLSVTPDKVWIDGNRVPKDLNVPAEAVVKGDSKII 136

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AAS++AK  RD  M    K+YP YGFD H GY TA+H   +K+ G    HR  F P+
Sbjct: 137 EISAASVLAKTARDAEMYELAKRYPQYGFDRHKGYGTAQHLAALKQYGVLPEHRRNFAPV 196

Query: 205 RNL 207
           + L
Sbjct: 197 KTL 199


>gi|189425513|ref|YP_001952690.1| ribonuclease HII [Geobacter lovleyi SZ]
 gi|189421772|gb|ACD96170.1| Ribonuclease H [Geobacter lovleyi SZ]
          Length = 208

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/193 (48%), Positives = 122/193 (63%), Gaps = 6/193 (3%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           HFE +A  R      VAGIDE GRG LAGPV+ AA+IL+P+    G+NDSKK++ ++RE 
Sbjct: 15  HFERQA--RAAGYTFVAGIDEAGRGPLAGPVIAAAVILNPDAPVEGVNDSKKLTEQRRER 72

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPED 128
           L+E I + A+ + +       ID+ NI +AT  A+  AV+ L   P   LIDG  +I   
Sbjct: 73  LFELIMARALAVGVGQVDAATIDQINILQATRRAMLAAVQALSASPDLLLIDGITTIASP 132

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LP Q   + +GDS S SIAAASIIAKVTRDR+M    K YPDYGF  H GY +A H   +
Sbjct: 133 LPQQT--IKQGDSRSASIAAASIIAKVTRDRMMGAYDKLYPDYGFLRHKGYGSAVHLAAL 190

Query: 189 KEKGPSCIHRLTF 201
           ++ GP  IHR+TF
Sbjct: 191 RQHGPCPIHRMTF 203


>gi|57651813|ref|YP_186119.1| ribonuclease HII [Staphylococcus aureus subsp. aureus COL]
 gi|87160122|ref|YP_493834.1| ribonuclease HII [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194952|ref|YP_499752.1| ribonuclease HII [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151221366|ref|YP_001332188.1| ribonuclease HII [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161509410|ref|YP_001575069.1| ribonuclease HII [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142034|ref|ZP_03566527.1| ribonuclease HII [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|258452543|ref|ZP_05700549.1| ribonuclease HII [Staphylococcus aureus A5948]
 gi|262048142|ref|ZP_06021029.1| RNase HII [Staphylococcus aureus D30]
 gi|282920028|ref|ZP_06327757.1| ribonuclease HII [Staphylococcus aureus A9765]
 gi|284024237|ref|ZP_06378635.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 132]
 gi|294848239|ref|ZP_06788986.1| ribonuclease HII [Staphylococcus aureus A9754]
 gi|304381192|ref|ZP_07363845.1| ribonuclease HII [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|71153704|sp|Q5HGI8|RNH2_STAAC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|97189306|sp|Q2FHJ4|RNH2_STAA3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|122539702|sp|Q2FZ38|RNH2_STAA8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|172048860|sp|A6QGE4|RNH2_STAAE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|189043665|sp|A8Z3S4|RNH2_STAAT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|57285999|gb|AAW38093.1| ribonuclease HII [Staphylococcus aureus subsp. aureus COL]
 gi|87126096|gb|ABD20610.1| ribonuclease HII [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202510|gb|ABD30320.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150374166|dbj|BAF67426.1| ribonuclease HII [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368219|gb|ABX29190.1| ribonuclease H [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|257859761|gb|EEV82603.1| ribonuclease HII [Staphylococcus aureus A5948]
 gi|259163708|gb|EEW48263.1| RNase HII [Staphylococcus aureus D30]
 gi|269940736|emb|CBI49117.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282594744|gb|EFB99728.1| ribonuclease HII [Staphylococcus aureus A9765]
 gi|294825039|gb|EFG41461.1| ribonuclease HII [Staphylococcus aureus A9754]
 gi|302751067|gb|ADL65244.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340175|gb|EFM06116.1| ribonuclease HII [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315198484|gb|EFU28813.1| ribonuclease H [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140940|gb|EFW32787.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144345|gb|EFW36111.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329313913|gb|AEB88326.1| Ribonuclease HII [Staphylococcus aureus subsp. aureus T0131]
 gi|329728949|gb|EGG65363.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 21189]
          Length = 255

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +++E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP    ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ + GY T +H  
Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G    HR +F P+++L
Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254


>gi|19746108|ref|NP_607244.1| ribonuclease HII [Streptococcus pyogenes MGAS8232]
 gi|94994428|ref|YP_602526.1| ribonuclease HII [Streptococcus pyogenes MGAS10750]
 gi|32171675|sp|Q8P109|RNH2_STRP8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166226661|sp|Q1J6K1|RNH2_STRPF RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|19748282|gb|AAL97743.1| putative ribonuclease HII [Streptococcus pyogenes MGAS8232]
 gi|94547936|gb|ABF37982.1| Ribonuclease HII [Streptococcus pyogenes MGAS10750]
          Length = 263

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/204 (42%), Positives = 124/204 (60%), Gaps = 12/204 (5%)

Query: 14  LEAMVR------EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           LEAM+       +K    +AGIDEVGRG LAGPVV A +IL       G+NDSKKI   K
Sbjct: 55  LEAMLSYEKALYKKGYQAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKAK 114

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR 123
            E +Y+ +   A+ I I    +Q ID+ NI++AT  A+  A++ L+     P   LID  
Sbjct: 115 HETIYQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAM 174

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           ++  D+     ++IKGD+ SLSIAAASI+AKVTRD++M    + +P YGF  + GY T +
Sbjct: 175 TL--DIAISQQSIIKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKE 232

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H Q +K  G + IHR +F P++++
Sbjct: 233 HLQGLKAYGITPIHRKSFEPVKSM 256


>gi|319638850|ref|ZP_07993608.1| ribonuclease HII [Neisseria mucosa C102]
 gi|317399754|gb|EFV80417.1| ribonuclease HII [Neisseria mucosa C102]
          Length = 230

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/183 (45%), Positives = 112/183 (61%), Gaps = 3/183 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           AG+DE GRG L G V  AA+IL  + ++P G+ DSKK+S KKR+ L + I   A+  SI+
Sbjct: 40  AGVDEAGRGPLVGSVFAAAVILPEHFDLP-GLTDSKKLSEKKRDMLAQMIKEQAVAWSIA 98

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    I + NI  AT+ A+  A+E L V+P    IDG  +P+DL   A AV+KGDS  +
Sbjct: 99  FADPDEILQLNILHATMAAMKRAIEGLSVVPDKVWIDGNRVPKDLNVPAEAVVKGDSKII 158

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AAS++AK  RD  M    K+YP YGFD H GY TA+H   +K+ G    HR  F P+
Sbjct: 159 EISAASVLAKTARDAEMYELAKRYPQYGFDRHKGYGTAQHLAALKQYGVLPEHRRDFAPV 218

Query: 205 RNL 207
           + L
Sbjct: 219 KTL 221


>gi|297544719|ref|YP_003677021.1| Ribonuclease H [Thermoanaerobacter mathranii subsp. mathranii str.
           A3]
 gi|296842494|gb|ADH61010.1| Ribonuclease H [Thermoanaerobacter mathranii subsp. mathranii str.
           A3]
          Length = 242

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/188 (46%), Positives = 115/188 (61%), Gaps = 2/188 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  + + N+  +AGIDE GRG L GPVV A +IL  N     INDSKK+S +KRE L E 
Sbjct: 49  ENQLYQLNLNFIAGIDEAGRGPLVGPVVAACVILPKNVFIPEINDSKKLSEEKREVLSEV 108

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI  +I     + IDK NI  AT  A+  A+  +Q      L+D  +IP+ +    
Sbjct: 109 IKKVAISYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQ-IEINQ 167

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            A+IKGDS S+SIAAASI+AKV RD++M+  HK YP Y F+ + GY T +H + +K+ GP
Sbjct: 168 KAIIKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYGP 227

Query: 194 SCIHRLTF 201
             IHR TF
Sbjct: 228 CPIHRKTF 235


>gi|158320503|ref|YP_001513010.1| ribonuclease H [Alkaliphilus oremlandii OhILAs]
 gi|189043610|sp|A8MHC7|RNH2_ALKOO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|158140702|gb|ABW19014.1| Ribonuclease H [Alkaliphilus oremlandii OhILAs]
          Length = 203

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/199 (42%), Positives = 120/199 (60%), Gaps = 9/199 (4%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P  ++E+ +       +A  DEVGRG L G V+ AA+I+  + I  G+ DSKK+SHKKRE
Sbjct: 2   PTIDIESAIWNSGYENIACCDEVGRGCLFGSVLAAAVIMPKDVIIDGVKDSKKLSHKKRE 61

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALIDG 122
           +LYE I   ++ I + + S + IDK NI  AT  A+  A+ +L+      V P   LID 
Sbjct: 62  QLYEIIKEKSLAIGVGTVSSEIIDKINIKNATRLAMKKAILSLKDKDGNIVAPDYILIDA 121

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
             I  D+P    AVIKGD +   IAAASI+AKV RDRL +   +++P+YG   + GY T 
Sbjct: 122 EEI--DVPTPQSAVIKGDDLCHGIAAASIVAKVLRDRLCQRWEEEHPNYGIGQNKGYGTK 179

Query: 183 KHQQVIKEKGPSCIHRLTF 201
            H++ +KE GPS +HR +F
Sbjct: 180 AHREALKEHGPSPMHRKSF 198


>gi|82750847|ref|YP_416588.1| ribonuclease HII [Staphylococcus aureus RF122]
 gi|97189311|sp|Q2YXM2|RNH2_STAAB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|82656378|emb|CAI80797.1| ribonuclease HII [Staphylococcus aureus RF122]
          Length = 255

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +++E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACAPILNSNHNYLGLDDSKKVPVTK 115

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAFAFGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP    ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ + GY T +H  
Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G    HR +F P+++L
Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254


>gi|15924234|ref|NP_371768.1| ribonuclease HII [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926827|ref|NP_374360.1| ribonuclease HII [Staphylococcus aureus subsp. aureus N315]
 gi|148267735|ref|YP_001246678.1| ribonuclease HII [Staphylococcus aureus subsp. aureus JH9]
 gi|150393793|ref|YP_001316468.1| ribonuclease HII [Staphylococcus aureus subsp. aureus JH1]
 gi|156979565|ref|YP_001441824.1| ribonuclease HII [Staphylococcus aureus subsp. aureus Mu3]
 gi|255006031|ref|ZP_05144632.2| ribonuclease HII [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257795700|ref|ZP_05644679.1| ribonuclease HII [Staphylococcus aureus A9781]
 gi|258415924|ref|ZP_05682194.1| ribonuclease HII [Staphylococcus aureus A9763]
 gi|258421686|ref|ZP_05684610.1| ribonuclease HII [Staphylococcus aureus A9719]
 gi|258434842|ref|ZP_05688916.1| ribonuclease HII [Staphylococcus aureus A9299]
 gi|258444582|ref|ZP_05692911.1| ribonuclease HII [Staphylococcus aureus A8115]
 gi|258447585|ref|ZP_05695729.1| ribonuclease HII [Staphylococcus aureus A6300]
 gi|258449427|ref|ZP_05697530.1| ribonuclease HII [Staphylococcus aureus A6224]
 gi|258454806|ref|ZP_05702770.1| ribonuclease HII [Staphylococcus aureus A5937]
 gi|269202860|ref|YP_003282129.1| ribonuclease HII [Staphylococcus aureus subsp. aureus ED98]
 gi|282892732|ref|ZP_06300967.1| ribonuclease HII [Staphylococcus aureus A8117]
 gi|282927586|ref|ZP_06335202.1| ribonuclease HII [Staphylococcus aureus A10102]
 gi|295406179|ref|ZP_06815986.1| ribonuclease HII [Staphylococcus aureus A8819]
 gi|296274801|ref|ZP_06857308.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MR1]
 gi|297244407|ref|ZP_06928290.1| ribonuclease HII [Staphylococcus aureus A8796]
 gi|54039252|sp|P66676|RNH2_STAAN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|54042175|sp|P66675|RNH2_STAAM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166226657|sp|A7X1L7|RNH2_STAA1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|189043663|sp|A6U163|RNH2_STAA2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|189043664|sp|A5ISC9|RNH2_STAA9 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|13701044|dbj|BAB42339.1| RNase HII [Staphylococcus aureus subsp. aureus N315]
 gi|14247014|dbj|BAB57406.1| RNase HII [Staphylococcus aureus subsp. aureus Mu50]
 gi|147740804|gb|ABQ49102.1| RNase HII [Staphylococcus aureus subsp. aureus JH9]
 gi|149946245|gb|ABR52181.1| Ribonuclease H [Staphylococcus aureus subsp. aureus JH1]
 gi|156721700|dbj|BAF78117.1| RNase HII [Staphylococcus aureus subsp. aureus Mu3]
 gi|257789672|gb|EEV28012.1| ribonuclease HII [Staphylococcus aureus A9781]
 gi|257839260|gb|EEV63734.1| ribonuclease HII [Staphylococcus aureus A9763]
 gi|257842372|gb|EEV66797.1| ribonuclease HII [Staphylococcus aureus A9719]
 gi|257849203|gb|EEV73185.1| ribonuclease HII [Staphylococcus aureus A9299]
 gi|257850075|gb|EEV74028.1| ribonuclease HII [Staphylococcus aureus A8115]
 gi|257853776|gb|EEV76735.1| ribonuclease HII [Staphylococcus aureus A6300]
 gi|257857415|gb|EEV80313.1| ribonuclease HII [Staphylococcus aureus A6224]
 gi|257863189|gb|EEV85953.1| ribonuclease HII [Staphylococcus aureus A5937]
 gi|262075150|gb|ACY11123.1| ribonuclease HII [Staphylococcus aureus subsp. aureus ED98]
 gi|282590589|gb|EFB95666.1| ribonuclease HII [Staphylococcus aureus A10102]
 gi|282764729|gb|EFC04854.1| ribonuclease HII [Staphylococcus aureus A8117]
 gi|285816926|gb|ADC37413.1| Ribonuclease HII [Staphylococcus aureus 04-02981]
 gi|294968767|gb|EFG44789.1| ribonuclease HII [Staphylococcus aureus A8819]
 gi|297178437|gb|EFH37683.1| ribonuclease HII [Staphylococcus aureus A8796]
 gi|312829638|emb|CBX34480.1| ribonuclease HII (RNase HII) [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315131038|gb|EFT87022.1| RNase HII [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727171|gb|EGG63627.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 21172]
          Length = 255

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +++E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPITK 115

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP    ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ + GY T +H  
Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G    HR +F P+++L
Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254


>gi|255655274|ref|ZP_05400683.1| ribonuclease HII [Clostridium difficile QCD-23m63]
 gi|296451258|ref|ZP_06892998.1| ribonuclease H [Clostridium difficile NAP08]
 gi|296880390|ref|ZP_06904353.1| ribonuclease H [Clostridium difficile NAP07]
 gi|296259864|gb|EFH06719.1| ribonuclease H [Clostridium difficile NAP08]
 gi|296428631|gb|EFH14515.1| ribonuclease H [Clostridium difficile NAP07]
          Length = 255

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/188 (43%), Positives = 116/188 (61%), Gaps = 4/188 (2%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           K    + GIDE GRG LAGPVV + ++   +    G+NDSKK+S  KR+EL+E I   A+
Sbjct: 70  KGYLYIGGIDEAGRGPLAGPVVASVVVFKKDTKIEGVNDSKKLSEAKRDELFEVIKEEAL 129

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
              I   +++ ID+ NI  AT  A+  A+  L+  P   L+D  +IP  +      ++KG
Sbjct: 130 DYGIGIVNNEEIDEFNILNATYMAMKKAINCLKKAPDYLLVDAATIP-GIDIAQNPIVKG 188

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DS S+SIAAASI+AKVTRD +M    + YP+YGF SH GY T +H + I++ G + IHR 
Sbjct: 189 DSKSISIAAASILAKVTRDSIMYQYDRVYPEYGFKSHKGYGTKEHYEAIEKYGITPIHRK 248

Query: 200 TFRPLRNL 207
           +F  L+N+
Sbjct: 249 SF--LKNI 254


>gi|315150451|gb|EFT94467.1| ribonuclease HII [Enterococcus faecalis TX0012]
          Length = 255

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/183 (48%), Positives = 122/183 (66%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S KKRE LY +I   A+ I + 
Sbjct: 74  IAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLYNQIQEQAVAIGLG 133

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI++AT  A+  A+++L   P   LID   +  D+P    ++IKGD+ S+
Sbjct: 134 IADQGVIDQINIYQATKQAMKMAIDDLAFTPDYLLIDAMQL--DVPQPQESLIKGDARSI 191

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASIIAKVTRDRLM    + YP YGF ++ GY T +H   +++ G + IHR TF P+
Sbjct: 192 SIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKYGVTPIHRRTFAPI 251

Query: 205 RNL 207
           +++
Sbjct: 252 KDM 254


>gi|160872277|ref|ZP_02062409.1| ribonuclease HII [Rickettsiella grylli]
 gi|159121076|gb|EDP46414.1| ribonuclease HII [Rickettsiella grylli]
          Length = 191

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/185 (45%), Positives = 112/185 (60%), Gaps = 2/185 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84
           VAG+DE GRG LAGPV  AA+ILD      G+ DSK+++ K RE   +KI   A   +I 
Sbjct: 6   VAGVDEAGRGPLAGPVFAAAVILDNKKKMTGLKDSKQLTAKSREYFAKKIQEKAKTWAIG 65

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + IDK NI  A L A+  AV  L +IP   L+DG+  P+ L   + A+IKGD    
Sbjct: 66  RAEVEEIDKLNIFHACLLAMKRAVCALALIPDFVLVDGKHCPQ-LSVPSKAIIKGDEKIT 124

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKV RD  M +   +YP YGF  H GY T +H   +K+ GPS IHR +F P+
Sbjct: 125 AISAASILAKVHRDANMVLLDAEYPGYGFAQHKGYTTKQHLLALKKLGPSPIHRRSFAPI 184

Query: 205 RNLSV 209
           R+  +
Sbjct: 185 RHYEL 189


>gi|120555445|ref|YP_959796.1| ribonuclease H [Marinobacter aquaeolei VT8]
 gi|189043693|sp|A1U3P0|RNH2_MARAV RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|120325294|gb|ABM19609.1| RNase HII [Marinobacter aquaeolei VT8]
          Length = 227

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/182 (44%), Positives = 112/182 (61%), Gaps = 4/182 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSKK++ KKR  LY+ I  ++A  S+ 
Sbjct: 18  LAGVDEVGRGPLIGAVVTAAVILDPARPIPGLADSKKLTEKKRLRLYDDILENAAAWSLG 77

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
                 ID+ NI++AT+ A+  AVE L + P   L+DG   P+   P +   VIKGDS  
Sbjct: 78  RCEASEIDELNIYQATMLAMKRAVEGLSIAPEYVLVDGNRCPKWQWPSEP--VIKGDSRV 135

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AKVTRDR M     ++P +G   H GYPT  H + +   G +  HR +FRP
Sbjct: 136 EAISAASILAKVTRDREMEALDVRFPGFGLAQHKGYPTPVHLEALNRLGVTPEHRRSFRP 195

Query: 204 LR 205
           ++
Sbjct: 196 VK 197


>gi|325479041|gb|EGC82142.1| ribonuclease HII [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 209

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/177 (45%), Positives = 109/177 (61%), Gaps = 3/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AGIDEVGRG LAGPVV  A+I+  ++   GI DSKK+S KK   L EKI    I  +  
Sbjct: 21  IAGIDEVGRGPLAGPVVTCAVIMKSDSAIDGITDSKKLSRKKMLNLKEKILEDTICYAYG 80

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A+ + ID+ NI  AT  A+  A+ NL++ P   LID   I  D+P     ++KGD    
Sbjct: 81  YANPRLIDRVNIKNATHKAMEDALNNLKIKPEIVLIDAERIDTDIP--QLNIVKGDLNEY 138

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            I+ ASI+AK+ RD +M    K YP+YGFD+++GY T KH Q ++E G + IHR TF
Sbjct: 139 VISCASILAKIRRDDIMINFSKLYPNYGFDTNMGYGTKKHYQGLEEYGETSIHRQTF 195


>gi|29376207|ref|NP_815361.1| ribonuclease HII [Enterococcus faecalis V583]
 gi|227518838|ref|ZP_03948887.1| ribonuclease HII [Enterococcus faecalis TX0104]
 gi|227553455|ref|ZP_03983504.1| ribonuclease HII [Enterococcus faecalis HH22]
 gi|256961843|ref|ZP_05566014.1| ribonuclease HII [Enterococcus faecalis Merz96]
 gi|293382908|ref|ZP_06628826.1| ribonuclease HII [Enterococcus faecalis R712]
 gi|293389603|ref|ZP_06634060.1| ribonuclease HII [Enterococcus faecalis S613]
 gi|312907622|ref|ZP_07766613.1| ribonuclease HII [Enterococcus faecalis DAPTO 512]
 gi|312910239|ref|ZP_07769086.1| ribonuclease HII [Enterococcus faecalis DAPTO 516]
 gi|39932363|sp|Q834J7|RNH2_ENTFA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|29343670|gb|AAO81431.1| ribonuclease HII [Enterococcus faecalis V583]
 gi|227073709|gb|EEI11672.1| ribonuclease HII [Enterococcus faecalis TX0104]
 gi|227177412|gb|EEI58384.1| ribonuclease HII [Enterococcus faecalis HH22]
 gi|256952339|gb|EEU68971.1| ribonuclease HII [Enterococcus faecalis Merz96]
 gi|291079573|gb|EFE16937.1| ribonuclease HII [Enterococcus faecalis R712]
 gi|291081220|gb|EFE18183.1| ribonuclease HII [Enterococcus faecalis S613]
 gi|310626650|gb|EFQ09933.1| ribonuclease HII [Enterococcus faecalis DAPTO 512]
 gi|311289512|gb|EFQ68068.1| ribonuclease HII [Enterococcus faecalis DAPTO 516]
 gi|315575779|gb|EFU87970.1| ribonuclease HII [Enterococcus faecalis TX0309B]
 gi|315580431|gb|EFU92622.1| ribonuclease HII [Enterococcus faecalis TX0309A]
          Length = 255

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/183 (48%), Positives = 122/183 (66%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S KKRE LY +I   A+ I + 
Sbjct: 74  IAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLYNQIQEQAVAIGLG 133

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI++AT  A+  A+++L   P   LID   +  D+P    ++IKGD+ S+
Sbjct: 134 IADQGVIDQINIYQATKQAMKMAIDDLAFTPDYLLIDAMQL--DVPQPQESLIKGDARSI 191

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASIIAKVTRDRLM    + YP YGF ++ GY T +H   +++ G + IHR TF P+
Sbjct: 192 SIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKYGVTPIHRRTFAPI 251

Query: 205 RNL 207
           +++
Sbjct: 252 KDM 254


>gi|139473750|ref|YP_001128466.1| ribonuclease HII [Streptococcus pyogenes str. Manfredo]
 gi|209559442|ref|YP_002285914.1| ribonuclease HII [Streptococcus pyogenes NZ131]
 gi|166226662|sp|A2REG0|RNH2_STRPG RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238056782|sp|B5XLK7|RNH2_STRPZ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|134271997|emb|CAM30235.1| ribonuclease HII [Streptococcus pyogenes str. Manfredo]
 gi|209540643|gb|ACI61219.1| Ribonuclease HII [Streptococcus pyogenes NZ131]
          Length = 263

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/204 (42%), Positives = 127/204 (62%), Gaps = 12/204 (5%)

Query: 14  LEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           LEAM+  EK ++      +AGIDEVGRG LAGPVV A +IL  +    G+NDSKKI   K
Sbjct: 55  LEAMLSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKSK 114

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR 123
            E +Y+ +   A+ I I    +Q ID+ NI++AT  A+  A++ L+     P   LID  
Sbjct: 115 HETIYQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAM 174

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           ++  D+     +++KGD+ SLSIAAASI+AKVTRD++M    + +P YGF  + GY T +
Sbjct: 175 TL--DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKE 232

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H Q +K  G + IHR +F P++++
Sbjct: 233 HLQGLKAYGITPIHRKSFEPVKSM 256


>gi|293390804|ref|ZP_06635138.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951338|gb|EFE01457.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 199

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/183 (44%), Positives = 114/183 (62%), Gaps = 1/183 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSK +S KKR  L E+I   A+  ++ 
Sbjct: 13  IAGVDEVGRGPLVGAVVTAAVILDPKQTIEGLADSKTLSEKKRLLLAEEIKQKALAWALG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  A++ A+  A+++L++ P   L+DG  IP +L   A AV+KGD++  
Sbjct: 73  RAEPHEIDELNILHASMLAMERAIKHLKIQPHFVLVDGNRIPPNLMIPAQAVVKGDALVP 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M    KKYP Y F  H GYPT  H + ++E G    +R +F P+
Sbjct: 133 EISAASILAKVARDQEMIELDKKYPPYEFAKHKGYPTKLHLEKLREFGVLPEYRRSFAPV 192

Query: 205 RNL 207
           + L
Sbjct: 193 KKL 195


>gi|306827335|ref|ZP_07460622.1| ribonuclease HII [Streptococcus pyogenes ATCC 10782]
 gi|304430482|gb|EFM33504.1| ribonuclease HII [Streptococcus pyogenes ATCC 10782]
          Length = 263

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/204 (42%), Positives = 127/204 (62%), Gaps = 12/204 (5%)

Query: 14  LEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           LEAM+  EK ++      +AGIDEVGRG LAGPVV A +IL  +    G+NDSKKI   K
Sbjct: 55  LEAMLSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKSK 114

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR 123
            E +Y+ +   A+ I I    +Q ID+ NI++AT  A+  A++ L+     P   LID  
Sbjct: 115 HETIYQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAM 174

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           ++  D+     +++KGD+ SLSIAAASI+AKVTRD++M    + +P YGF  + GY T +
Sbjct: 175 TL--DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKE 232

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H Q +K  G + IHR +F P++++
Sbjct: 233 HLQGLKAYGITPIHRKSFEPVKSM 256


>gi|194289778|ref|YP_002005685.1| ribonuclease hii [Cupriavidus taiwanensis LMG 19424]
 gi|193223613|emb|CAQ69620.1| RIBONUCLEASE HII PROTEIN [Cupriavidus taiwanensis LMG 19424]
          Length = 258

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 113/184 (61%), Gaps = 7/184 (3%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSA 86
           G+DE GRG LAGPV  AA++LDP     G+ DSK ++  KRE LYEKI   A+   I+ A
Sbjct: 31  GVDEAGRGPLAGPVYAAAVVLDPKRPIRGLADSKILTAAKREALYEKICERALGWHIAFA 90

Query: 87  SHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE-DLPCQAFAVIKGDSI 142
           + + ID  NI  A++ A+  AV+ L    V+P    +DG   P+   P +A  ++KGD++
Sbjct: 91  TVEEIDTINILHASMLAMQRAVQGLAASGVVPDLVQVDGNRCPQVAYPVEA--IVKGDAL 148

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +I+AASI+AKV RDR +   H  YP YGFDSHVGY T +H   + E G +  HR +F 
Sbjct: 149 VKAISAASILAKVARDRALMELHAAYPQYGFDSHVGYGTPQHMAALAEFGATPHHRRSFA 208

Query: 203 PLRN 206
           P+R 
Sbjct: 209 PVRE 212


>gi|27467840|ref|NP_764477.1| RNase HII [Staphylococcus epidermidis ATCC 12228]
 gi|57866704|ref|YP_188394.1| ribonuclease HII [Staphylococcus epidermidis RP62A]
 gi|282876322|ref|ZP_06285189.1| ribonuclease HII [Staphylococcus epidermidis SK135]
 gi|38258563|sp|Q8CPH6|RNH2_STAES RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|71153705|sp|Q5HPU6|RNH2_STAEQ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|27315385|gb|AAO04519.1|AE016747_16 RNase HII [Staphylococcus epidermidis ATCC 12228]
 gi|57637362|gb|AAW54150.1| ribonuclease HII [Staphylococcus epidermidis RP62A]
 gi|281295347|gb|EFA87874.1| ribonuclease HII [Staphylococcus epidermidis SK135]
 gi|329724332|gb|EGG60844.1| ribonuclease HII [Staphylococcus epidermidis VCU144]
 gi|329736260|gb|EGG72532.1| ribonuclease HII [Staphylococcus epidermidis VCU028]
 gi|329736540|gb|EGG72806.1| ribonuclease HII [Staphylococcus epidermidis VCU045]
          Length = 256

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/183 (43%), Positives = 116/183 (63%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG LAGPVV  A+IL+ N+   G++DSKK+S K R  L + +  +    +  
Sbjct: 74  ICGIDEVGRGPLAGPVVACAVILEKNHHYIGLDDSKKVSPKNRARLNQNLKENVYQYAYG 133

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID+ NI++AT  A+  A+  L V P   LID  ++  D+P    ++IKGD+ S+
Sbjct: 134 IASSVEIDELNIYRATQLAMLRAINQLDVTPTHLLIDAMTLDIDIP--QTSIIKGDAKSV 191

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASI+AK  RD+ MR   K++P+YGFD + GY T +H + I + G    HR +F P+
Sbjct: 192 SIAAASIMAKEYRDQYMRQLSKQFPEYGFDKNAGYGTKQHLKAIDQVGIINEHRQSFEPI 251

Query: 205 RNL 207
           +++
Sbjct: 252 KSM 254


>gi|257085098|ref|ZP_05579459.1| ribonuclease HII [Enterococcus faecalis Fly1]
 gi|256993128|gb|EEU80430.1| ribonuclease HII [Enterococcus faecalis Fly1]
          Length = 255

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/183 (48%), Positives = 122/183 (66%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S KKRE LY +I   A+ I + 
Sbjct: 74  IAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLYNQIQEQAVAIGLG 133

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI++AT  A+  A+++L   P   LID   +  D+P    ++IKGD+ S+
Sbjct: 134 IADQGVIDQINIYQATKQAMKMAIDDLAFTPDYLLIDAMQL--DVPQPQESLIKGDARSI 191

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASIIAKVTRDRLM    + YP YGF ++ GY T +H   +++ G + IHR TF P+
Sbjct: 192 SIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKYGVTPIHRRTFAPI 251

Query: 205 RNL 207
           +++
Sbjct: 252 KDM 254


>gi|21282856|ref|NP_645944.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MW2]
 gi|49486083|ref|YP_043304.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297208110|ref|ZP_06924541.1| ribonuclease H [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300912191|ref|ZP_07129634.1| ribonuclease H [Staphylococcus aureus subsp. aureus TCH70]
 gi|38258614|sp|Q8NX02|RNH2_STAAW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|56749521|sp|Q6G9W9|RNH2_STAAS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|21204295|dbj|BAB94992.1| RNase HII [Staphylococcus aureus subsp. aureus MW2]
 gi|49244526|emb|CAG42955.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296887353|gb|EFH26255.1| ribonuclease H [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300886437|gb|EFK81639.1| ribonuclease H [Staphylococcus aureus subsp. aureus TCH70]
          Length = 255

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +++E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP    ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ + GY T +H  
Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G    HR +F P+++L
Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254


>gi|260655674|ref|ZP_05861147.1| ribonuclease HII [Jonquetella anthropi E3_33 E1]
 gi|260629591|gb|EEX47785.1| ribonuclease HII [Jonquetella anthropi E3_33 E1]
          Length = 195

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 75/181 (41%), Positives = 108/181 (59%), Gaps = 5/181 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81
           +AG+DE GRG LAGPV+ AA+IL P      +  G+ DSKK+S KKRE+L+  +    ++
Sbjct: 3   LAGVDEAGRGPLAGPVMAAAVILSPEQKNVLVQSGLRDSKKLSAKKREKLFGLMQELGVV 62

Query: 82  -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             + +AS + ID+ NI +ATL A+  AV  L   P    +DG      +     A++ GD
Sbjct: 63  WRLQAASRRRIDRMNILQATLWAMARAVNRLPATPDGVAVDGSQEIPGISLYQQAIVGGD 122

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
            +   I+AAS++AKV RDRLM    + YP YG   H GY TA+HQ+ +   GP+ +HR +
Sbjct: 123 DLYPEISAASVVAKVVRDRLMTALDRLYPGYGLAQHKGYGTAQHQEALLRLGPTPLHRRS 182

Query: 201 F 201
           F
Sbjct: 183 F 183


>gi|209527547|ref|ZP_03276049.1| Ribonuclease H [Arthrospira maxima CS-328]
 gi|209492035|gb|EDZ92388.1| Ribonuclease H [Arthrospira maxima CS-328]
          Length = 223

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/193 (44%), Positives = 112/193 (58%), Gaps = 6/193 (3%)

Query: 20  EKNMWP-VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK 74
           E+  W  VAGIDEVGRGA  GPVV AA+ L    I      G+ DSKK++H  R  L   
Sbjct: 24  EQLSWTAVAGIDEVGRGAWFGPVVAAAVQLSETTILELAAAGVKDSKKLTHNDRLSLSTL 83

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I S AI   I  AS + ID+ NI +AT  A+  ++  LQ  P+  L+DG  +  +L    
Sbjct: 84  IRSKAIACQIGWASAREIDRLNILQATQLAMRRSILKLQPPPQFCLVDGNRLIPNLSIPQ 143

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            A++KGDS  + IAA+SI+AKV RD LM    + YP YGF  H GY T +H+Q ++  GP
Sbjct: 144 QAIVKGDSHCVVIAASSIVAKVWRDELMTRLDRTYPQYGFAQHKGYGTKQHKQALQSYGP 203

Query: 194 SCIHRLTFRPLRN 206
              HR +F P+R 
Sbjct: 204 CFHHRFSFAPVRQ 216


>gi|124007381|ref|ZP_01692088.1| ribonuclease HII [Microscilla marina ATCC 23134]
 gi|123987214|gb|EAY26954.1| ribonuclease HII [Microscilla marina ATCC 23134]
          Length = 195

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/186 (43%), Positives = 118/186 (63%), Gaps = 1/186 (0%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
           N +  AG+DEVGRG LAGPVV AA+IL PN     + DSKK++ K RE+L + I   AI 
Sbjct: 8   NKYIEAGVDEVGRGCLAGPVVAAAVILPPNYKNELLMDSKKLNKKTREKLRKTIEEEAIS 67

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            +++ ASH  ID+ NI  A+  A++ A+E L+  P   LIDG             ++KGD
Sbjct: 68  WAVAEASHTEIDEINILNASFLAMHRAIEQLEPEPELLLIDGNRFNPYKFVAYQCIVKGD 127

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           +  LSIAAASI+AK  RD LM     ++P+Y ++++VGYPT KH+  I++ G +  HR++
Sbjct: 128 NKFLSIAAASILAKTYRDDLMEKLAVEHPEYDWENNVGYPTKKHRAAIEQHGATPWHRMS 187

Query: 201 FRPLRN 206
           F+ +++
Sbjct: 188 FKLIKD 193


>gi|258593814|emb|CBE70155.1| Ribonuclease HII (RNase HII) [NC10 bacterium 'Dutch sediment']
          Length = 195

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/195 (42%), Positives = 113/195 (57%), Gaps = 4/195 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
           +E+ +R      +AG+DE GRG+LAGPVV AA+IL P     G++DSK +S ++RE L  
Sbjct: 1   MESCLRAAGYRLIAGVDEAGRGSLAGPVVAAAVILSPTCAIKGVDDSKALSAQQRERLDL 60

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPC 131
            I S A+ +       + ID  NI +AT+ A+  AVE L   P   LIDG   P   +PC
Sbjct: 61  AIMSEAVAVGFGVVQEEMIDALNILQATMLAMRRAVEALNPPPGFVLIDGDQSPRCAIPC 120

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   +  GD +  SI+AASI+AKV RDR+MR      P YGF  H GY T++H   I   
Sbjct: 121 RL--IPSGDRLCFSISAASILAKVARDRIMRAYDLALPHYGFGRHKGYGTSEHLSTIARF 178

Query: 192 GPSCIHRLTFRPLRN 206
           G S IHR +F+ +R 
Sbjct: 179 GVSPIHRKSFKGVRE 193


>gi|312130977|ref|YP_003998317.1| rnase hii [Leadbetterella byssophila DSM 17132]
 gi|311907523|gb|ADQ17964.1| RNase HII [Leadbetterella byssophila DSM 17132]
          Length = 192

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/177 (42%), Positives = 112/177 (63%), Gaps = 1/177 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG LAGPVV AA+IL P      +NDSK++S + R +L  +I + A+  ++  
Sbjct: 13  AGVDEAGRGCLAGPVVAAAVILPPGYENEWLNDSKQLSKEDRNQLRTEIENIAVAFAVGQ 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           ASH+ IDK NI +A+  A++ A+E L   P   LIDG             ++KGD+  ++
Sbjct: 73  ASHEEIDKINILQASFLAMHRAIEQLSTRPDHLLIDGNRFSPYPLIPHTCIVKGDAKFMN 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           IAAASI+AK  RD +M I  ++YP Y ++++ GYPT  H++ I+E G +  HR+TFR
Sbjct: 133 IAAASILAKTYRDEIMEILSQEYPQYKWEANAGYPTIFHRKAIQEHGFTPYHRMTFR 189


>gi|167627613|ref|YP_001678113.1| ribonuclease HII [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|189043598|sp|B0TYD6|RNH2_FRAP2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|167597614|gb|ABZ87612.1| Ribonuclease H [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 185

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/183 (43%), Positives = 114/183 (62%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84
           + GIDE GRG L+GPVV A +ILDP     G+ DSKK++ KKR+ LYE IT+ A   +I 
Sbjct: 3   ILGIDEAGRGPLSGPVVAAGVILDPEKTIDGLADSKKLTEKKRQSLYEVITAHAKAYTIV 62

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S Q ID+ NI +ATL A+    +NL+      L+DG  +P +    + A++KGDS   
Sbjct: 63  EVSPQQIDQLNILQATLKAMNQVADNLKGQFDKVLVDGNKLP-NWDYNSEAIVKGDSKVQ 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD +     + +P YGF  H GYPT +H + I++ G   IHR +++P+
Sbjct: 122 EISAASILAKVHRDNICLEHDRLFPQYGFAKHKGYPTKEHLENIRKYGVLNIHRKSYKPI 181

Query: 205 RNL 207
           + L
Sbjct: 182 QLL 184


>gi|251810677|ref|ZP_04825150.1| ribonuclease HII [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805837|gb|EES58494.1| ribonuclease HII [Staphylococcus epidermidis BCM-HMP0060]
          Length = 260

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/183 (43%), Positives = 116/183 (63%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG LAGPVV  A+IL+ N+   G++DSKK+S K R  L + +  +    +  
Sbjct: 78  ICGIDEVGRGPLAGPVVACAVILEKNHHYIGLDDSKKVSPKNRARLNQNLKENVYQYAYG 137

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID+ NI++AT  A+  A+  L V P   LID  ++  D+P    ++IKGD+ S+
Sbjct: 138 IASSVEIDELNIYRATQLAMLRAINQLDVTPTHLLIDAMTLDIDIP--QTSIIKGDAKSV 195

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASI+AK  RD+ MR   K++P+YGFD + GY T +H + I + G    HR +F P+
Sbjct: 196 SIAAASIMAKEYRDQYMRQLSKQFPEYGFDKNAGYGTKQHLKAIDQVGIINEHRQSFEPI 255

Query: 205 RNL 207
           +++
Sbjct: 256 KSM 258


>gi|15643677|ref|NP_228723.1| ribonuclease HII [Thermotoga maritima MSB8]
 gi|7227928|sp|Q9X017|RNH2_THEMA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|4981451|gb|AAD35996.1|AE001755_19 ribonuclease HII [Thermotoga maritima MSB8]
          Length = 238

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/188 (46%), Positives = 114/188 (60%), Gaps = 4/188 (2%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
           +K    VAG+DE GRG LAGPVV AA++L+      GINDSK++S  KRE L ++I   A
Sbjct: 8   KKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKE--IEGINDSKQLSPAKRERLLDEIMEKA 65

Query: 80  IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
            + I  AS + ID +NI  AT  A+  A+ENL V P   L+DG+ I   +P     ++KG
Sbjct: 66  AVGIGIASPEEIDLYNIFNATKLAMNRALENLSVKPSFVLVDGKGIELSVPGTC--LVKG 123

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D  S  I AASI+AKV RDRLM   H+ YP + F  H GY T +H   I++ G   IHRL
Sbjct: 124 DQKSKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKHKGYATKEHLNEIRKNGVLPIHRL 183

Query: 200 TFRPLRNL 207
           +F P+  L
Sbjct: 184 SFEPVLEL 191


>gi|313754412|pdb|3O3G|A Chain A, T. Maritima Rnase H2 In Complex With Nucleic Acid
           Substrate And Calcium Ions
          Length = 222

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/188 (46%), Positives = 114/188 (60%), Gaps = 4/188 (2%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
           +K    VAG+DE GRG LAGPVV AA++L+      GINDSK++S  KRE L ++I   A
Sbjct: 7   KKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKE--IEGINDSKQLSPAKRERLLDEIMEKA 64

Query: 80  IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
            + I  AS + ID +NI  AT  A+  A+ENL V P   L+DG+ I   +P     ++KG
Sbjct: 65  AVGIGIASPEEIDLYNIFNATKLAMNRALENLSVKPSFVLVDGKGIELSVP--GTCLVKG 122

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D  S  I AASI+AKV RDRLM   H+ YP + F  H GY T +H   I++ G   IHRL
Sbjct: 123 DQKSKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKHKGYATKEHLNEIRKNGVLPIHRL 182

Query: 200 TFRPLRNL 207
           +F P+  L
Sbjct: 183 SFEPVLEL 190


>gi|254304340|ref|ZP_04971698.1| ribonuclease H [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148324532|gb|EDK89782.1| ribonuclease H [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 217

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/182 (45%), Positives = 113/182 (62%), Gaps = 6/182 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84
           V G+DE GRG LAGPVV AA+IL         INDSKK++ KKRE+LY+ I  +  +++ 
Sbjct: 19  VIGVDEAGRGPLAGPVVAAAVILKEYTEELNEINDSKKLTEKKREKLYDIIMKNFDVAVG 78

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPR----SALIDGRSIPEDLPCQAFAVIKGD 140
            ++ + IDK NI  A   A+  A+ +L+ I      + L+DG    ++   + F ++KGD
Sbjct: 79  ISTVEEIDKLNILNADFLAMRRALNDLKNIKNEKEYTVLVDGNLKIKEYVGKQFPIVKGD 138

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHRL 199
           + SLSIAAASIIAKVTRDR M+     YPDY F+ H GY T  H +VIK+KG    +HR 
Sbjct: 139 AKSLSIAAASIIAKVTRDRFMKDLASIYPDYCFEKHKGYGTKAHIEVIKDKGAIEGVHRK 198

Query: 200 TF 201
            F
Sbjct: 199 VF 200


>gi|71903522|ref|YP_280325.1| ribonuclease HII [Streptococcus pyogenes MGAS6180]
 gi|97189348|sp|Q48TJ0|RNH2_STRPM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|71802617|gb|AAX71970.1| ribonuclease HII [Streptococcus pyogenes MGAS6180]
          Length = 238

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/204 (42%), Positives = 127/204 (62%), Gaps = 12/204 (5%)

Query: 14  LEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           LEAM+  EK ++      +AGIDEVGRG LAGPVV A +IL  +    G+NDSKKI   K
Sbjct: 30  LEAMLSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKSK 89

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR 123
            E +Y+ +   A+ I I    +Q ID+ NI++AT  A+  A++ L+     P   LID  
Sbjct: 90  HETIYQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAM 149

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           ++  D+     +++KGD+ SLSIAAASI+AKVTRD++M    + +P YGF  + GY T +
Sbjct: 150 TL--DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKE 207

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H Q +K  G + IHR +F P++++
Sbjct: 208 HLQGLKAYGITPIHRKSFEPVKSM 231


>gi|24373211|ref|NP_717254.1| ribonuclease HII [Shewanella oneidensis MR-1]
 gi|39932406|sp|Q8EGG1|RNH2_SHEON RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|24347435|gb|AAN54698.1|AE015610_2 ribonuclease HII [Shewanella oneidensis MR-1]
          Length = 209

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/187 (46%), Positives = 116/187 (62%), Gaps = 5/187 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDPN    G+NDSKK++ K+RE L+++I   A+   + 
Sbjct: 20  VAGVDEVGRGPLVGDVVTAAVILDPNRPILGLNDSKKLTEKRREALFDEICEKALSFHVG 79

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP----EDLPCQAFAVIKGD 140
            AS   ID+ NI  AT+ A+  AV  L++ P   L+DG   P    + L   + ++IKGD
Sbjct: 80  RASPAEIDELNILHATMLAMQRAVSGLKLTPALVLVDGNRSPAFTHQGLSLASHSIIKGD 139

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
            +  SI+AASIIAKVTRDR M      YP YGF  H GYPT  H + I E G    +R +
Sbjct: 140 GLIASISAASIIAKVTRDREMDALDAAYPQYGFAKHKGYPTKAHFEAIAEHGVFDQYRKS 199

Query: 201 FRPLRNL 207
           F+P++ L
Sbjct: 200 FKPVKAL 206


>gi|50914225|ref|YP_060197.1| ribonuclease HII [Streptococcus pyogenes MGAS10394]
 gi|68053078|sp|Q5XC49|RNH2_STRP6 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|50903299|gb|AAT87014.1| Ribonuclease HII [Streptococcus pyogenes MGAS10394]
          Length = 263

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/204 (42%), Positives = 124/204 (60%), Gaps = 12/204 (5%)

Query: 14  LEAMVR------EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           LEAM+       +K    +AGIDEVGRG LAGPVV A +IL       G+NDSKKI   K
Sbjct: 55  LEAMLSYEKALYKKGYQAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKAK 114

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR 123
            E +Y+ +   A+ I I    +Q ID+ NI++AT  A+  A++ L+     P   LID  
Sbjct: 115 HETIYQAVKEQALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAM 174

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           ++  D+     +++KGD+ SLSIAAASI+AKVTRD++M    + +P YGF  + GY T +
Sbjct: 175 TL--DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKE 232

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H Q +K  G + IHR +F P++++
Sbjct: 233 HLQGLKAYGITPIHRKSFEPVKSM 256


>gi|323480814|gb|ADX80253.1| ribonuclease HII [Enterococcus faecalis 62]
          Length = 255

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/183 (48%), Positives = 122/183 (66%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S KKRE LY +I   A+ I + 
Sbjct: 74  IAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLYNQIQEQAVAIGLG 133

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI++AT  A+  A+++L   P   LID   +  D+P    ++IKGD+ S+
Sbjct: 134 IADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLIDAMQL--DVPQPQESLIKGDARSI 191

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASIIAKVTRDRLM    + YP YGF ++ GY T +H   +++ G + IHR TF P+
Sbjct: 192 SIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKYGVTPIHRRTFAPI 251

Query: 205 RNL 207
           +++
Sbjct: 252 KDM 254


>gi|283798046|ref|ZP_06347199.1| ribonuclease HII [Clostridium sp. M62/1]
 gi|291074350|gb|EFE11714.1| ribonuclease HII [Clostridium sp. M62/1]
 gi|295091815|emb|CBK77922.1| Ribonuclease HII [Clostridium cf. saccharolyticum K10]
          Length = 223

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/177 (46%), Positives = 107/177 (60%), Gaps = 1/177 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDE GRG LAGPVV AA IL  +     +NDSKK++ K+REEL+ +I   A+   + 
Sbjct: 32  ICGIDEAGRGPLAGPVVAAACILPTDCEILYLNDSKKLTEKRREELFVEIQEKAVSFGVG 91

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S   ID+ NI +AT +A+  AVE L V P   L D   IP     +   +IKGD+ S+
Sbjct: 92  IVSPAVIDEINILQATYEAMRQAVEKLSVRPDVFLNDAVVIPGIDESRQVKIIKGDAKSV 151

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SIAAASI+AKVTRD +M    + YP+YGF  H GY T  H   ++E G   IHR +F
Sbjct: 152 SIAAASILAKVTRDHMMEEYDRLYPEYGFAKHKGYGTKAHLDAVREHGMCPIHRRSF 208


>gi|289578443|ref|YP_003477070.1| ribonuclease H [Thermoanaerobacter italicus Ab9]
 gi|289528156|gb|ADD02508.1| Ribonuclease H [Thermoanaerobacter italicus Ab9]
          Length = 242

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 115/188 (61%), Gaps = 2/188 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  + + N+  +AG+DE GRG L GPVV A +IL  N     INDSKK+S +KRE L E 
Sbjct: 49  ENQLYQLNLNFIAGVDEAGRGPLVGPVVAACVILPKNVFIPEINDSKKLSEEKREVLSEV 108

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI  +I     + IDK NI  AT  A+  A+  +Q      L+D  +IP+ +    
Sbjct: 109 IKKVAISYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQ-IEINQ 167

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            A+IKGDS S+SIAAASI+AKV RD++M+  HK YP Y F+ + GY T +H + +K+ GP
Sbjct: 168 KAIIKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYGP 227

Query: 194 SCIHRLTF 201
             IHR TF
Sbjct: 228 CPIHRKTF 235


>gi|229545737|ref|ZP_04434462.1| ribonuclease HII [Enterococcus faecalis TX1322]
 gi|229549926|ref|ZP_04438651.1| ribonuclease HII [Enterococcus faecalis ATCC 29200]
 gi|255972709|ref|ZP_05423295.1| ribonuclease HII [Enterococcus faecalis T1]
 gi|256619148|ref|ZP_05475994.1| ribonuclease HII [Enterococcus faecalis ATCC 4200]
 gi|256762584|ref|ZP_05503164.1| ribonuclease HII [Enterococcus faecalis T3]
 gi|256853210|ref|ZP_05558580.1| ribonuclease HII [Enterococcus faecalis T8]
 gi|256959064|ref|ZP_05563235.1| ribonuclease HII [Enterococcus faecalis DS5]
 gi|256965040|ref|ZP_05569211.1| ribonuclease HII [Enterococcus faecalis HIP11704]
 gi|257079095|ref|ZP_05573456.1| ribonuclease HII [Enterococcus faecalis JH1]
 gi|257082466|ref|ZP_05576827.1| ribonuclease HII [Enterococcus faecalis E1Sol]
 gi|257086659|ref|ZP_05581020.1| ribonuclease HII [Enterococcus faecalis D6]
 gi|257416178|ref|ZP_05593172.1| ribonuclease HII [Enterococcus faecalis AR01/DG]
 gi|257419380|ref|ZP_05596374.1| ribonuclease HII [Enterococcus faecalis T11]
 gi|257422526|ref|ZP_05599516.1| ribonuclease HII [Enterococcus faecalis X98]
 gi|294781634|ref|ZP_06746970.1| ribonuclease HII [Enterococcus faecalis PC1.1]
 gi|300860321|ref|ZP_07106408.1| ribonuclease HII [Enterococcus faecalis TUSoD Ef11]
 gi|307270933|ref|ZP_07552216.1| ribonuclease HII [Enterococcus faecalis TX4248]
 gi|307273138|ref|ZP_07554384.1| ribonuclease HII [Enterococcus faecalis TX0855]
 gi|307274873|ref|ZP_07556036.1| ribonuclease HII [Enterococcus faecalis TX2134]
 gi|307289192|ref|ZP_07569148.1| ribonuclease HII [Enterococcus faecalis TX0109]
 gi|307291911|ref|ZP_07571780.1| ribonuclease HII [Enterococcus faecalis TX0411]
 gi|312899500|ref|ZP_07758830.1| ribonuclease HII [Enterococcus faecalis TX0470]
 gi|312951583|ref|ZP_07770479.1| ribonuclease HII [Enterococcus faecalis TX0102]
 gi|229304939|gb|EEN70935.1| ribonuclease HII [Enterococcus faecalis ATCC 29200]
 gi|229309187|gb|EEN75174.1| ribonuclease HII [Enterococcus faecalis TX1322]
 gi|255963727|gb|EET96203.1| ribonuclease HII [Enterococcus faecalis T1]
 gi|256598675|gb|EEU17851.1| ribonuclease HII [Enterococcus faecalis ATCC 4200]
 gi|256683835|gb|EEU23530.1| ribonuclease HII [Enterococcus faecalis T3]
 gi|256711669|gb|EEU26707.1| ribonuclease HII [Enterococcus faecalis T8]
 gi|256949560|gb|EEU66192.1| ribonuclease HII [Enterococcus faecalis DS5]
 gi|256955536|gb|EEU72168.1| ribonuclease HII [Enterococcus faecalis HIP11704]
 gi|256987125|gb|EEU74427.1| ribonuclease HII [Enterococcus faecalis JH1]
 gi|256990496|gb|EEU77798.1| ribonuclease HII [Enterococcus faecalis E1Sol]
 gi|256994689|gb|EEU81991.1| ribonuclease HII [Enterococcus faecalis D6]
 gi|257158006|gb|EEU87966.1| ribonuclease HII [Enterococcus faecalis ARO1/DG]
 gi|257161208|gb|EEU91168.1| ribonuclease HII [Enterococcus faecalis T11]
 gi|257164350|gb|EEU94310.1| ribonuclease HII [Enterococcus faecalis X98]
 gi|294451330|gb|EFG19796.1| ribonuclease HII [Enterococcus faecalis PC1.1]
 gi|300849360|gb|EFK77110.1| ribonuclease HII [Enterococcus faecalis TUSoD Ef11]
 gi|306496909|gb|EFM66457.1| ribonuclease HII [Enterococcus faecalis TX0411]
 gi|306499901|gb|EFM69262.1| ribonuclease HII [Enterococcus faecalis TX0109]
 gi|306508321|gb|EFM77428.1| ribonuclease HII [Enterococcus faecalis TX2134]
 gi|306510123|gb|EFM79147.1| ribonuclease HII [Enterococcus faecalis TX0855]
 gi|306512431|gb|EFM81080.1| ribonuclease HII [Enterococcus faecalis TX4248]
 gi|310630549|gb|EFQ13832.1| ribonuclease HII [Enterococcus faecalis TX0102]
 gi|311293370|gb|EFQ71926.1| ribonuclease HII [Enterococcus faecalis TX0470]
 gi|315027181|gb|EFT39113.1| ribonuclease HII [Enterococcus faecalis TX2137]
 gi|315029298|gb|EFT41230.1| ribonuclease HII [Enterococcus faecalis TX4000]
 gi|315034056|gb|EFT45988.1| ribonuclease HII [Enterococcus faecalis TX0017]
 gi|315037065|gb|EFT48997.1| ribonuclease HII [Enterococcus faecalis TX0027]
 gi|315147349|gb|EFT91365.1| ribonuclease HII [Enterococcus faecalis TX4244]
 gi|315152395|gb|EFT96411.1| ribonuclease HII [Enterococcus faecalis TX0031]
 gi|315155667|gb|EFT99683.1| ribonuclease HII [Enterococcus faecalis TX0043]
 gi|315158162|gb|EFU02179.1| ribonuclease HII [Enterococcus faecalis TX0312]
 gi|315164101|gb|EFU08118.1| ribonuclease HII [Enterococcus faecalis TX1302]
 gi|315169817|gb|EFU13834.1| ribonuclease HII [Enterococcus faecalis TX1342]
 gi|315172218|gb|EFU16235.1| ribonuclease HII [Enterococcus faecalis TX1346]
 gi|327535218|gb|AEA94052.1| ribonuclease H [Enterococcus faecalis OG1RF]
          Length = 255

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/183 (48%), Positives = 122/183 (66%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S KKRE LY +I   A+ I + 
Sbjct: 74  IAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLYNQIQEQAVAIGLG 133

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI++AT  A+  A+++L   P   LID   +  D+P    ++IKGD+ S+
Sbjct: 134 IADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLIDAMQL--DVPQPQESLIKGDARSI 191

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASIIAKVTRDRLM    + YP YGF ++ GY T +H   +++ G + IHR TF P+
Sbjct: 192 SIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKYGVTPIHRRTFAPI 251

Query: 205 RNL 207
           +++
Sbjct: 252 KDM 254


>gi|295113049|emb|CBL31686.1| Ribonuclease HII [Enterococcus sp. 7L76]
 gi|315145132|gb|EFT89148.1| ribonuclease HII [Enterococcus faecalis TX2141]
 gi|315160534|gb|EFU04551.1| ribonuclease HII [Enterococcus faecalis TX0645]
 gi|315168949|gb|EFU12966.1| ribonuclease HII [Enterococcus faecalis TX1341]
          Length = 255

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/183 (48%), Positives = 122/183 (66%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S KKRE LY +I   A+ I + 
Sbjct: 74  IAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLYNQIQEQAVAIGLG 133

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI++AT  A+  A+++L   P   LID   +  D+P    ++IKGD+ S+
Sbjct: 134 IADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLIDAMQL--DVPQPQESLIKGDARSI 191

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASIIAKVTRDRLM    + YP YGF ++ GY T +H   +++ G + IHR TF P+
Sbjct: 192 SIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKYGVTPIHRRTFAPI 251

Query: 205 RNL 207
           +++
Sbjct: 252 KDM 254


>gi|319401464|gb|EFV89674.1| ribonuclease HII [Staphylococcus epidermidis FRI909]
          Length = 256

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/183 (43%), Positives = 116/183 (63%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG LAGPVV  A+IL+ N+   G++DSKK+S K R  L + +  +    +  
Sbjct: 74  ICGIDEVGRGPLAGPVVACAVILEKNHHYIGLDDSKKVSPKNRARLNQNLKENVYQYAYG 133

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID+ NI++AT  A+  A+ +L V P   LID  ++  D+P    ++IKGD+ S+
Sbjct: 134 IASSVEIDELNIYRATQLAMLRAINHLDVTPTHLLIDAMTLDIDIP--QTSIIKGDAKSV 191

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASI+AK  RD+ M+   K++PDYGFD + GY T +H + I   G    HR +F P+
Sbjct: 192 SIAAASIMAKEYRDQYMKQLSKQFPDYGFDKNAGYGTKQHLEAIDRVGFINEHRQSFEPI 251

Query: 205 RNL 207
           +++
Sbjct: 252 KSM 254


>gi|300087868|ref|YP_003758390.1| ribonuclease H [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527601|gb|ADJ26069.1| Ribonuclease H [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 212

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/202 (41%), Positives = 117/202 (57%), Gaps = 7/202 (3%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHK 66
           P F  E+ +       +AG+DE GRGALAGPVV AA+IL     +     + DSK +S  
Sbjct: 8   PGFREESKLHGNGYRLIAGVDEAGRGALAGPVVAAAVILGRRRRSGWLKAVRDSKLLSPA 67

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
            R+ LY  IT +A+   +   SH +ID+H I   T  A+  A+ENL   P + LID  ++
Sbjct: 68  NRDRLYGLITENALSWGVGVVSHHFIDRHGIVPGTRLAMALALENLDPSPEALLIDYLTL 127

Query: 126 PE-DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           P   LP +   +I GD++ +SIA AS+IAKVTRDRLM     +YP Y F  H GY TA+H
Sbjct: 128 PAVTLPQKG--IIDGDAVCVSIACASVIAKVTRDRLMIGLDNRYPGYRFGRHKGYGTAEH 185

Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206
              ++  GP  +HR +F P++ 
Sbjct: 186 LDCLERLGPCSVHRRSFAPVQT 207


>gi|329893784|ref|ZP_08269872.1| Ribonuclease HII [gamma proteobacterium IMCC3088]
 gi|328923507|gb|EGG30821.1| Ribonuclease HII [gamma proteobacterium IMCC3088]
          Length = 193

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/190 (42%), Positives = 110/190 (57%), Gaps = 1/190 (0%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76
           M+    +  VAG+DEVGRG L G VV AA+ILD NN   G+ DSKK + K+   L E I 
Sbjct: 1   MLLAYEIGLVAGVDEVGRGPLVGNVVTAAVILDVNNPVEGLKDSKKCTEKQLHALNEDIQ 60

Query: 77  SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135
           + A+  +   A+   ID+ NI  AT+ A+  AV  L + P   L+DG  +P  L   A  
Sbjct: 61  AKALCFAFGQATPAEIDELNILHATMLAMTRAVNGLSITPEHVLVDGNRVPRQLGVPATP 120

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
            IKGD     IAAASI+AKV RD  M    +++P+YGF  H GYPT +H+Q + + G   
Sbjct: 121 CIKGDGTYACIAAASILAKVARDAQMVDLDRRHPEYGFARHKGYPTLEHRQALIDHGVLI 180

Query: 196 IHRLTFRPLR 205
            HR +F P++
Sbjct: 181 EHRKSFGPVQ 190


>gi|298504765|gb|ADI83488.1| ribonuclease HII [Geobacter sulfurreducens KN400]
          Length = 211

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/201 (47%), Positives = 123/201 (61%), Gaps = 2/201 (0%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           P+   ++ E+    +    +AGIDE GRG LAGPVV AA+IL       G++DSKK++  
Sbjct: 10  PQPAVWDFESRAARRGYRTIAGIDEAGRGPLAGPVVAAAVILPFGTDLPGVDDSKKLTPA 69

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R++L+  I  +A+ I +  A H+ ID+ NI +ATL A+  AVE L   P   L+DG S 
Sbjct: 70  RRDDLFTLIQGTALAIGVGVADHKVIDRINILQATLAAMREAVECLTDPPDYLLVDGIS- 128

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  LP     + KGDS S+SIAAASIIAKVTRDRLM    + YP YGF  H GY +A H 
Sbjct: 129 PVPLPVAQQTIKKGDSASISIAAASIIAKVTRDRLMAEYDQLYPGYGFAEHKGYGSASHM 188

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
             I   GPS IHR TFR +R 
Sbjct: 189 AAIAALGPSPIHRTTFRGVRE 209


>gi|187931769|ref|YP_001891754.1| ribonuclease HII [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|238691569|sp|B2SGW7|RNH2_FRATM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|187712678|gb|ACD30975.1| ribonuclease HII [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 187

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/183 (43%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84
           + GIDE GRG L+GPVV A +ILD + I  G+ DSKK++ KKR+ LY++I T +   +I 
Sbjct: 3   ILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYTIV 62

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             + Q ID+ NI +ATL A++    NL+      L+DG  +P +    + A++KGDS  +
Sbjct: 63  EINPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSKII 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD +     + YP YGF  H GYPT +H + IK+ G   IHR +++P+
Sbjct: 122 EISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYKPV 181

Query: 205 RNL 207
           + L
Sbjct: 182 QVL 184


>gi|312903393|ref|ZP_07762573.1| ribonuclease HII [Enterococcus faecalis TX0635]
 gi|310633269|gb|EFQ16552.1| ribonuclease HII [Enterococcus faecalis TX0635]
 gi|315577621|gb|EFU89812.1| ribonuclease HII [Enterococcus faecalis TX0630]
          Length = 255

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/183 (48%), Positives = 122/183 (66%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S KKRE LY +I   A+ I + 
Sbjct: 74  IAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLYNQIQEQAVAIGLG 133

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI++AT  A+  A+++L   P   LID   +  D+P    ++IKGD+ S+
Sbjct: 134 IADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLIDAMQL--DVPQPQESLIKGDARSI 191

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASIIAKVTRDRLM    + YP YGF ++ GY T +H   +++ G + IHR TF P+
Sbjct: 192 SIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKYGVTPIHRRTFAPI 251

Query: 205 RNL 207
           +++
Sbjct: 252 KDM 254


>gi|255975761|ref|ZP_05426347.1| ribonuclease HII [Enterococcus faecalis T2]
 gi|307277980|ref|ZP_07559064.1| ribonuclease HII [Enterococcus faecalis TX0860]
 gi|255968633|gb|EET99255.1| ribonuclease HII [Enterococcus faecalis T2]
 gi|306505377|gb|EFM74563.1| ribonuclease HII [Enterococcus faecalis TX0860]
          Length = 255

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/183 (48%), Positives = 122/183 (66%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S KKRE LY +I   A+ I + 
Sbjct: 74  IAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLYNQIQEQAVAIGLG 133

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI++AT  A+  A+++L   P   LID   +  D+P    ++IKGD+ S+
Sbjct: 134 IADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLIDAMQL--DVPQPQESLIKGDARSI 191

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASIIAKVTRDRLM    + YP YGF ++ GY T +H   +++ G + IHR TF P+
Sbjct: 192 SIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKYGVTPIHRRTFAPI 251

Query: 205 RNL 207
           +++
Sbjct: 252 KDM 254


>gi|307294539|ref|ZP_07574381.1| Ribonuclease H [Sphingobium chlorophenolicum L-1]
 gi|306879013|gb|EFN10231.1| Ribonuclease H [Sphingobium chlorophenolicum L-1]
          Length = 199

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 115/184 (62%), Gaps = 2/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DE GRG LAGPVV AA+IL   + P G+NDSK++S  +R  L  +I + A+   + 
Sbjct: 15  VAGVDEAGRGPLAGPVVAAAVILRREDCPEGLNDSKQLSAARRAVLEGEIKARALCWGLG 74

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID  NI  AT+ A+  AVE L       L+DG   P+     + AV++GD+  L
Sbjct: 75  VASVEEIDSINILWATMLAMTRAVEALTHDCAHVLVDGNRCPQ-WRWASTAVVEGDAKCL 133

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASI+AK  RDR+M  A   +P YG++S+ GY + KH   ++E GP+ +HR +F P+
Sbjct: 134 SIAAASILAKEARDRMMVEAAAAHPHYGWESNKGYGSPKHLAALREHGPTPLHRRSFAPV 193

Query: 205 RNLS 208
             LS
Sbjct: 194 AQLS 197


>gi|94988631|ref|YP_596732.1| ribonuclease HII [Streptococcus pyogenes MGAS9429]
 gi|94992454|ref|YP_600553.1| ribonuclease HII [Streptococcus pyogenes MGAS2096]
 gi|166226658|sp|Q1JBP9|RNH2_STRPB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166226659|sp|Q1JLN1|RNH2_STRPC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|94542139|gb|ABF32188.1| ribonuclease HII [Streptococcus pyogenes MGAS9429]
 gi|94545962|gb|ABF36009.1| Ribonuclease HII [Streptococcus pyogenes MGAS2096]
          Length = 263

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/197 (42%), Positives = 121/197 (61%), Gaps = 6/197 (3%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  + +K    +AGIDEVGRG LAGPVV A +IL       G+NDSKKI   K E +Y+ 
Sbjct: 62  EKALYKKGYQAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKSKHETIYQA 121

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLP 130
           +   A+ I I    +Q ID+ NI++AT  A+  A++ L+     P   LID  ++  D+ 
Sbjct: 122 VKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLESQLTQPDYLLIDAMTL--DIA 179

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               +++KGD+ SLSIAAASI+AKVTRD++M    + +P YGF  + GY T +H Q +K 
Sbjct: 180 ISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQGLKA 239

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR +F P++++
Sbjct: 240 YGITPIHRKSFEPVKSM 256


>gi|237740891|ref|ZP_04571372.1| ribonuclease HII [Fusobacterium sp. 4_1_13]
 gi|256846832|ref|ZP_05552287.1| ribonuclease HII [Fusobacterium sp. 3_1_36A2]
 gi|229431188|gb|EEO41400.1| ribonuclease HII [Fusobacterium sp. 4_1_13]
 gi|256717798|gb|EEU31356.1| ribonuclease HII [Fusobacterium sp. 3_1_36A2]
          Length = 214

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/189 (44%), Positives = 118/189 (62%), Gaps = 8/189 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84
           V G+DE GRG LAGPVV AA+IL   +     INDSKK++ K RE+LY+ I  +  +++ 
Sbjct: 19  VIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSKKLTEKTREKLYDIIMKNFYVAVG 78

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPR-----SALIDGRSIPEDLPCQAFAVIKG 139
            ++ + IDK NI  A   A+  A+++L+ I +     + L+DG    ++   +   ++KG
Sbjct: 79  VSTVEEIDKLNILNADFLAMRRALKDLENIKKDKKEYTVLVDGNLKIKEYTGKQLPIVKG 138

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHR 198
           D+ SLSIAAASIIAKVTRDRLM+     YPDY F+ H GY T  H +VIK+KG    +HR
Sbjct: 139 DAKSLSIAAASIIAKVTRDRLMKDLASVYPDYHFEKHKGYGTKVHIEVIKDKGAIEGVHR 198

Query: 199 LTF-RPLRN 206
             F R + N
Sbjct: 199 KVFLRKINN 207


>gi|186684020|ref|YP_001867216.1| ribonuclease HII [Nostoc punctiforme PCC 73102]
 gi|186466472|gb|ACC82273.1| ribonuclease HII/HIII [Nostoc punctiforme PCC 73102]
          Length = 218

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 114/183 (62%), Gaps = 5/183 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI- 80
           VAG+DEVGRGAL GPVV AA+IL  + +P      I DSKK+S  +R +L ++I + AI 
Sbjct: 27  VAGVDEVGRGALFGPVVAAAVILPDHALPILIAAKIKDSKKLSSSRRTQLAQQICALAID 86

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             I  AS   IDK NI +ATL A+  AV  L+V P   L+DG    +DL      +IKGD
Sbjct: 87  WKIGFASTAEIDKINILQATLLAMKRAVLKLKVQPAICLVDGNQSIKDLLLPQQTIIKGD 146

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
             SL+IA+ASI+AKV RD L+     KYP Y  + + GY + +H   +++ GPS +HR +
Sbjct: 147 ERSLAIASASIVAKVWRDDLVLRLALKYPMYNLERNKGYGSQRHLLALQQYGPSPLHRQS 206

Query: 201 FRP 203
           FRP
Sbjct: 207 FRP 209


>gi|296313291|ref|ZP_06863232.1| ribonuclease HII [Neisseria polysaccharea ATCC 43768]
 gi|296840213|gb|EFH24151.1| ribonuclease HII [Neisseria polysaccharea ATCC 43768]
          Length = 194

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/184 (45%), Positives = 112/184 (60%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83
            AG+DE GRG L G V  AA+IL +  ++P G+ DSKK+S KKR+ L E I S A+   I
Sbjct: 5   TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKSQAVAWHI 63

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           ++A  + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  
Sbjct: 64  AAAGPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKI 123

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           + I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P
Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183

Query: 204 LRNL 207
           +RNL
Sbjct: 184 VRNL 187


>gi|108762969|ref|YP_630793.1| ribonuclease HII [Myxococcus xanthus DK 1622]
 gi|123247896|sp|Q1D980|RNH2_MYXXD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|108466849|gb|ABF92034.1| ribonuclease HII [Myxococcus xanthus DK 1622]
          Length = 293

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 121/201 (60%), Gaps = 5/201 (2%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI-SHKK 67
           R     E  + E+    +AG+DE G   LAGPVV AA +L       G++DSKKI   +K
Sbjct: 66  RKLLRFETELWEQGHTHIAGVDEAGMAPLAGPVVAAAAVLPKGFRLKGLDDSKKILDAEK 125

Query: 68  REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           RE L E I   A+  ++  A  + ID+ NI+ A L A+  AVE L V P   L+D R++P
Sbjct: 126 RESLAEAIKRDAVAWAVGRAEVEEIDRINIYHAGLLAMRRAVEGLSVKPDHLLVDARTVP 185

Query: 127 E-DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           E  +P +   +IKGD++SLSIAAASI+AK TRDR M     +YP YG  +H GYPT  H 
Sbjct: 186 ECSVPQKG--IIKGDALSLSIAAASILAKTTRDRWMAELDDQYPGYGLAAHKGYPTPHHL 243

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
           QV++EKG   IHR +F P+R 
Sbjct: 244 QVLREKGVLPIHRRSFAPVRE 264


>gi|294340693|emb|CAZ89085.1| Ribonuclease HII (RNase HII) [Thiomonas sp. 3As]
          Length = 214

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/184 (45%), Positives = 119/184 (64%), Gaps = 4/184 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG DEVGRG  AGPVV AA++LDP +   G+ DSK +S ++REEL   I + ++  SI+
Sbjct: 18  IAGCDEVGRGPWAGPVVAAAVVLDPAHPIAGLADSKLLSARRREELDAHIRAYSLAWSIA 77

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            +S + ID+ NI +ATL A+  AV  L       L+DG   P+  +PC+A  ++ GD++ 
Sbjct: 78  ESSVEEIDQRNILQATLLAMQRAVAALPCKIDLLLVDGNQTPQVAMPCRA--IVGGDAVQ 135

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASIIAKV RDRLM    ++YP YGF+ H GY TA H+  +   GP  +HR +F P
Sbjct: 136 PAISAASIIAKVYRDRLMTELAQRYPGYGFERHSGYGTAAHRAALLTLGPCAVHRRSFAP 195

Query: 204 LRNL 207
           +R L
Sbjct: 196 IRRL 199


>gi|261366997|ref|ZP_05979880.1| ribonuclease HII [Subdoligranulum variabile DSM 15176]
 gi|282571115|gb|EFB76650.1| ribonuclease HII [Subdoligranulum variabile DSM 15176]
          Length = 201

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 87/177 (49%), Positives = 112/177 (63%), Gaps = 1/177 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           V G+DE GRG L GPV  AA+ILDP++   GINDSKK+S K+RE L+E+IT  A+   I 
Sbjct: 15  VCGVDEAGRGPLCGPVCCAAVILDPDDPIEGINDSKKLSEKRREALFEEITQRAVAYQIV 74

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S Q ID+ NI  AT+D +  AV  L   P   LIDG   P DL   A AV+KGD+ S 
Sbjct: 75  FISPQEIDERNILWATMDGMSQAVAGLNPQPEYVLIDGNRCPPDLSHPAKAVVKGDATSA 134

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SIAAASI+AKV+RDR M+   +++P Y    H GYPT  H ++I + G    +R +F
Sbjct: 135 SIAAASILAKVSRDRYMKELDQQFPQYQLAKHKGYPTKLHYELIAQYGIQPFYRRSF 191


>gi|315127144|ref|YP_004069147.1| RNAse HII [Pseudoalteromonas sp. SM9913]
 gi|315015658|gb|ADT68996.1| RNAse HII [Pseudoalteromonas sp. SM9913]
          Length = 199

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/187 (43%), Positives = 114/187 (60%), Gaps = 2/187 (1%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81
           N+  +AG+DEVGRG L G VV AA+IL+P     G+ DSKK++ KKR+ L  +I   A+ 
Sbjct: 7   NVTLIAGVDEVGRGPLVGDVVTAAVILNPAKPIAGLADSKKLTDKKRQLLAIEIKEKALC 66

Query: 82  -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            +I   S   ID+ NI +AT+ A+  AVE L  +P    +DG  +P+ L   A AV+KGD
Sbjct: 67  YAIGRCSPSEIDELNILQATMLAMSRAVEALSTVPEFVFVDGNRLPK-LAMPAQAVVKGD 125

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S+   I+AASI+AKV RD  M     +YP YGF  H GYPT  H   +++ G    HR +
Sbjct: 126 SLVAEISAASILAKVARDDEMIELDARYPQYGFAGHKGYPTKAHFAALEQYGAIDEHRKS 185

Query: 201 FRPLRNL 207
           F+P++ +
Sbjct: 186 FKPVQRV 192


>gi|119471147|ref|ZP_01613679.1| RNAse HII [Alteromonadales bacterium TW-7]
 gi|119445803|gb|EAW27085.1| RNAse HII [Alteromonadales bacterium TW-7]
          Length = 201

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/187 (43%), Positives = 112/187 (59%), Gaps = 2/187 (1%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81
           N+  +AG+DEVGRG L G VV AA+ILDP     G+ DSKK++ KKR+ L  +I  +A+ 
Sbjct: 7   NVTLIAGVDEVGRGPLVGDVVTAAVILDPTKPIAGLADSKKLTDKKRQALATEIKENALC 66

Query: 82  -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            +    S   ID  NI  AT+ A+  AVE L   P    IDG  +P+ L   A AV+KGD
Sbjct: 67  YAYGRCSPSEIDDLNILHATMLAMSRAVEGLSTQPEFVFIDGNRLPK-LAMPAQAVVKGD 125

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S+   I+AASI+AKV RD  M    K++P YGF  H GYPT  H   +++ G    HR +
Sbjct: 126 SLVAEISAASILAKVARDDEMLELDKRHPQYGFAGHKGYPTKAHFAALEQYGAIDEHRKS 185

Query: 201 FRPLRNL 207
           F+P++ +
Sbjct: 186 FKPVQRV 192


>gi|83945341|ref|ZP_00957689.1| ribonuclease HII [Oceanicaulis alexandrii HTCC2633]
 gi|83851175|gb|EAP89032.1| ribonuclease HII [Oceanicaulis alexandrii HTCC2633]
          Length = 202

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 77/182 (42%), Positives = 107/182 (58%), Gaps = 1/182 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84
           +AG+DE GRG LAGPVV AA+IL  N      ++DSKK+S K+R  L   I + A + + 
Sbjct: 10  IAGVDEAGRGPLAGPVVCAAVILPANFSALDQLDDSKKLSEKRRAALSAIIRAEARVGVG 69

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ N+  AT+ A+  AVE L VIP   LIDG  +P  L   A A++ GD    
Sbjct: 70  IAEPVEIDRLNVLHATMAAMVRAVEGLGVIPDEILIDGNRVPAGLSAPARAIVGGDGREA 129

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I AASIIAK  RD++M  A  ++  YG   H GYP+  H+  ++  G + IHRL++ P+
Sbjct: 130 CIGAASIIAKTLRDQIMIEAENRFSGYGLAGHKGYPSPSHKAALENLGAAPIHRLSYAPV 189

Query: 205 RN 206
           + 
Sbjct: 190 QQ 191


>gi|314933425|ref|ZP_07840790.1| ribonuclease HII [Staphylococcus caprae C87]
 gi|313653575|gb|EFS17332.1| ribonuclease HII [Staphylococcus caprae C87]
          Length = 256

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/198 (40%), Positives = 123/198 (62%), Gaps = 4/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           H+E E ++   N   + G+DEVGRG LAGPVV  A+IL+ ++   G+NDSKK+  K+R  
Sbjct: 60  HYENE-ILNHNNEALICGVDEVGRGPLAGPVVACAVILNRDHHYLGLNDSKKVPAKQRSI 118

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L EK+  + +  +   A+ Q ID  NI++AT  A+  A++ L + P   LID   +  ++
Sbjct: 119 LNEKLKDNVMSYAYGIATPQEIDDLNIYRATQVAMQRAIDQLSIKPTHLLIDAMKLDNNI 178

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P    ++IKGD+ S+SIAAASI+AK  RD  M+    +YP+YGF+ +VGY T +H + I 
Sbjct: 179 P--QTSIIKGDAKSVSIAAASIMAKEYRDDYMKELANEYPNYGFEKNVGYGTKQHLEAID 236

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G    HR TF P++++
Sbjct: 237 TFGVIKEHRQTFEPIKSM 254


>gi|322516896|ref|ZP_08069794.1| ribonuclease HII [Streptococcus vestibularis ATCC 49124]
 gi|322124552|gb|EFX96031.1| ribonuclease HII [Streptococcus vestibularis ATCC 49124]
          Length = 256

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 83/207 (40%), Positives = 123/207 (59%), Gaps = 7/207 (3%)

Query: 6   IPERPHFEL----EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61
           I E    E+    E ++  + +  +AG+DEVGRG LAGPVV AA+IL       G+NDSK
Sbjct: 48  IAEEERLEMMLSYEKVLYAQGVELIAGVDEVGRGPLAGPVVAAAVILPKFCKIKGLNDSK 107

Query: 62  KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           KI   K E +Y+++   A+ + +    +  ID  NI++AT  A+  A+E L   P   LI
Sbjct: 108 KIPKSKHEAIYKQVMKEAVAVGVGIKDNHVIDDVNIYEATKLAMAEAIEKLSPKPEHLLI 167

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           D  ++  DLP    ++IKGD+ SLSIAAASI+AKVTRD++M    +++P Y F  + GY 
Sbjct: 168 DAMTL--DLPIGQTSIIKGDANSLSIAAASIVAKVTRDKMMADYDQEFPGYAFAKNAGYG 225

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           T  H   +   G + IHR +F P++++
Sbjct: 226 TKDHLSGLDNFGVTPIHRRSFEPIKSI 252


>gi|192358895|ref|YP_001981622.1| ribonuclease HII [Cellvibrio japonicus Ueda107]
 gi|190685060|gb|ACE82738.1| ribonuclease HII [Cellvibrio japonicus Ueda107]
          Length = 204

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/181 (47%), Positives = 119/181 (65%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG DEVGRG LAG VV AA+ILDP     G++DSKK++ KKRE+L+++I + A+   I+
Sbjct: 16  LAGCDEVGRGPLAGDVVAAAVILDPGQSIIGLDDSKKLTEKKREQLFDEIRAKALSWCIA 75

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID+ NI +A+L A+  AV+ L + P   L+DG  +P+     A AV+KGDS   
Sbjct: 76  RASVEEIDRLNILQASLLAMTRAVQGLAIQPEHVLVDGNKLPK-WHYSAEAVVKGDSRVA 134

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKVTRDR M      YP YGF  H GYPT  H   ++  G S IHR ++ P+
Sbjct: 135 AISAASILAKVTRDREMVEMDSYYPGYGFAGHKGYPTKVHLDALERLGVSPIHRSSYAPV 194

Query: 205 R 205
           +
Sbjct: 195 K 195


>gi|119898186|ref|YP_933399.1| ribonuclease HII [Azoarcus sp. BH72]
 gi|166225166|sp|A1K6Q7|RNH2_AZOSB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|119670599|emb|CAL94512.1| Ribonuclease H [Azoarcus sp. BH72]
          Length = 204

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 79/183 (43%), Positives = 110/183 (60%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           + G+DE GRG L GPVV AA+ILDP     G+ DSKK++ + R+ L   I   A+  +++
Sbjct: 10  ICGVDEAGRGPLCGPVVAAAVILDPARPIDGLADSKKLTERARDRLAPLIRERALAWAVA 69

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID+ NI  AT+ A+  AV  L V+P   LIDG   P  L   A AV+ GD+   
Sbjct: 70  EASVEEIDRLNILHATMLAMQRAVSALSVLPGEVLIDGNRCPT-LAVPARAVVGGDASEP 128

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AK  RD  M+  H++YP YG   H GYPTA H   ++  G +  +R +F P+
Sbjct: 129 AISAASILAKTVRDAGMKALHEQYPHYGLADHKGYPTAGHLAALRRHGIADFYRRSFGPV 188

Query: 205 RNL 207
           R L
Sbjct: 189 REL 191


>gi|302878990|ref|YP_003847554.1| Ribonuclease H [Gallionella capsiferriformans ES-2]
 gi|302581779|gb|ADL55790.1| Ribonuclease H [Gallionella capsiferriformans ES-2]
          Length = 204

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/194 (45%), Positives = 125/194 (64%), Gaps = 2/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  + ++    + G+DE GRG LAGPV  AA+ILDPNN   G+NDSKK+S K+RE+L   
Sbjct: 8   EMALNDEKFTLICGVDEAGRGPLAGPVSAAAVILDPNNPIPGLNDSKKLSEKQREKLASL 67

Query: 75  ITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   A+  +++ A+ + ID+ NI +ATL A+  AV+ LQV P+  L+DG   P D    +
Sbjct: 68  IRECALAWAVAYATVEEIDRLNILQATLLAMRRAVQALQVQPQLVLVDGLYCP-DTGIAS 126

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            A++KGDS   +I+AASI+AK  RD LM    ++YP YGF  H GYPTA H   ++  G 
Sbjct: 127 EAIVKGDSKVAAISAASILAKTDRDALMLQLDEQYPHYGFALHKGYPTAAHLAALQAHGV 186

Query: 194 SCIHRLTFRPLRNL 207
           S +HR +F+P+R L
Sbjct: 187 SVVHRRSFKPVRVL 200


>gi|194467936|ref|ZP_03073922.1| Ribonuclease H [Lactobacillus reuteri 100-23]
 gi|194452789|gb|EDX41687.1| Ribonuclease H [Lactobacillus reuteri 100-23]
          Length = 256

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/194 (42%), Positives = 117/194 (60%), Gaps = 3/194 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F+ E    EK    VAG+DEVGRG LAGPVV  A+IL+ +    G+ DSK+++  +RE L
Sbjct: 60  FKYEKYYWEKGCQYVAGMDEVGRGPLAGPVVTCAVILNADFDLIGVTDSKQLTRHERENL 119

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y +I   A+ +SI+      ID+ NI+ AT DA+  AV +L   P   ++D   +  D+P
Sbjct: 120 YLRIVDEAVEVSIAVNDAPVIDQMNIYAATQDAMIRAVNHLHHRPDHLIVDAVPLAIDIP 179

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +IKGD  S+S+AAASI+AK  RD LMR     YP YGF  ++GY T +H   +++
Sbjct: 180 --QTTLIKGDQKSISVAAASIVAKEYRDHLMRDYDYVYPGYGFAQNMGYGTKEHLVGLEK 237

Query: 191 KGPSCIHRLTFRPL 204
            G + IHR +F P+
Sbjct: 238 MGATPIHRRSFNPV 251


>gi|77360940|ref|YP_340515.1| RNAse HII [Pseudoalteromonas haloplanktis TAC125]
 gi|97189191|sp|Q3IIW9|RNH2_PSEHT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|76875851|emb|CAI87072.1| RNAse HII [Pseudoalteromonas haloplanktis TAC125]
          Length = 200

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/188 (43%), Positives = 115/188 (61%), Gaps = 4/188 (2%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81
           N+  +AG+DEVGRG L G VV AA+ILDP+    G+ DSKK++ KKR+ L  +I   A+ 
Sbjct: 7   NVALIAGVDEVGRGPLVGDVVTAAVILDPSKPIAGLADSKKLTDKKRQALAIEIQEKALC 66

Query: 82  -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKG 139
            +    S   ID+ NI  AT+ A+  AVE L   P    IDG  +P+  +P QA  ++KG
Sbjct: 67  YAYGRCSPTEIDELNILHATMLAMTRAVEGLSTQPEFVFIDGNRLPKLTMPAQA--IVKG 124

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DS+   I+AASI+AKV RD  M    K++P+YGF  H GYPT  H   +++ G    HR 
Sbjct: 125 DSLVAEISAASILAKVARDNEMVELDKRHPEYGFAGHKGYPTKAHFAALEQYGAIKEHRK 184

Query: 200 TFRPLRNL 207
           +F+P++ +
Sbjct: 185 SFKPVQRV 192


>gi|320354477|ref|YP_004195816.1| RNase HII [Desulfobulbus propionicus DSM 2032]
 gi|320122979|gb|ADW18525.1| RNase HII [Desulfobulbus propionicus DSM 2032]
          Length = 224

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/214 (42%), Positives = 131/214 (61%), Gaps = 16/214 (7%)

Query: 1   MFCNSIPERPH---FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPF 55
           +F + +P  PH   F  E  ++ +    VAG+DE GRG LAGPVV A +IL  D +  P+
Sbjct: 6   LFADLLPFSPHTDTFYFERQLQRQGFARVAGVDEAGRGPLAGPVVAACVILPADGDFTPY 65

Query: 56  GINDSKKISHKKREELYEKI-TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI 114
              DSK ++ ++RE L+E + T+ A I +  AS + I++ NI +A+L A+  A+E    +
Sbjct: 66  --VDSKTLTRRQRERLFELLSTNGARIGVGEASPREIEQVNILQASLLAMKRAMEACGQV 123

Query: 115 PRSA-----LIDGR-SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
           P        L+DGR  +P  +P     ++KG+S S SIAAASI+AKVTRDR+M  AH  +
Sbjct: 124 PPGGVPDFLLVDGRFEVP--VPVGQRTLVKGESKSASIAAASIVAKVTRDRMMADAHALF 181

Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           P YGFD H GYPT  H++ I+  GP  +HR TFR
Sbjct: 182 PQYGFDRHQGYPTKAHREAIRNHGPCPLHRRTFR 215


>gi|126641188|ref|YP_001084172.1| ribonuclease HII [Acinetobacter baumannii ATCC 17978]
          Length = 174

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 110/170 (64%), Gaps = 5/170 (2%)

Query: 39  GPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIH 97
           G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I   A+  SI+ A+H  ID+ NI 
Sbjct: 2   GSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWSIAEATHAEIDELNIL 61

Query: 98  KATLDAIYHAVENLQVIPRSALIDGRSIPEDL--PCQAFAVIKGDSISLSIAAASIIAKV 155
           +AT  A+  AVE L+  P+  ++DG  IP+ +  PC+A  ++ GD+    I+AASI+AKV
Sbjct: 62  QATFLAMQRAVEGLKTQPQKVIVDGNQIPKGIIIPCEA--IVGGDASHAEISAASILAKV 119

Query: 156 TRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           TRDR M    ++YP +GF  H GYPT  H + I   G    HR ++ P++
Sbjct: 120 TRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYAPVK 169


>gi|39995755|ref|NP_951706.1| ribonuclease HII [Geobacter sulfurreducens PCA]
 gi|81703214|sp|Q74FG0|RNH2_GEOSL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|39982519|gb|AAR33979.1| ribonuclease HII [Geobacter sulfurreducens PCA]
          Length = 217

 Score =  142 bits (357), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/201 (47%), Positives = 123/201 (61%), Gaps = 2/201 (0%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           P+   ++ E+    +    +AGIDE GRG LAGPVV AA+IL       G++DSKK++  
Sbjct: 10  PQPAVWDFESRAARRGYRTIAGIDEAGRGPLAGPVVAAAVILPFGTDLPGVDDSKKLTPA 69

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R++L+  I  +A+ I +  A H+ ID+ NI +ATL A+  AVE L   P   L+DG S 
Sbjct: 70  RRDDLFTLIQGTALAIGVGVADHKVIDRINILQATLAAMREAVECLTDPPDYLLVDGIS- 128

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  LP     + KGDS S+SIAAASIIAKVTRDRLM    + YP YGF  H GY +A H 
Sbjct: 129 PVPLPVAQQTIKKGDSASISIAAASIIAKVTRDRLMAEYDQLYPGYGFAEHKGYGSASHM 188

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
             I   GPS IHR TFR +R 
Sbjct: 189 AAIAALGPSPIHRTTFRGVRE 209


>gi|237745358|ref|ZP_04575839.1| ribonuclease HII [Fusobacterium sp. 7_1]
 gi|229432587|gb|EEO42799.1| ribonuclease HII [Fusobacterium sp. 7_1]
          Length = 214

 Score =  142 bits (357), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/189 (43%), Positives = 116/189 (61%), Gaps = 8/189 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84
           V G+DE GRG LAGPVV AA+IL   +     INDSKK++ KKRE+LY+ I  +  +++ 
Sbjct: 19  VIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSKKLTEKKREKLYDIIMKNFYVAVG 78

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPCQAFAVIKG 139
            ++ + IDK NI  A   A+  A+++L+ I +       L+DG    ++   +   ++KG
Sbjct: 79  ISTVEEIDKMNILNADFLAMRRALKDLENIKKDKKEYIVLVDGNLKIKEYSGKQLPIVKG 138

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHR 198
           D+ SLS+AAASIIAKVTRDR M+     YPDY F+ H GY T  H + IK+KG    +HR
Sbjct: 139 DAKSLSVAAASIIAKVTRDRFMKDLANIYPDYSFEKHKGYGTKAHIEAIKDKGAIEGVHR 198

Query: 199 LTF-RPLRN 206
             F R + N
Sbjct: 199 KVFLRKINN 207


>gi|253581825|ref|ZP_04859049.1| ribonuclease HII [Fusobacterium varium ATCC 27725]
 gi|251836174|gb|EES64711.1| ribonuclease HII [Fusobacterium varium ATCC 27725]
          Length = 239

 Score =  142 bits (357), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/181 (47%), Positives = 111/181 (61%), Gaps = 4/181 (2%)

Query: 25  PVAGIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
            + G+DE GRG LAGPVV AA+ I D N+    INDSK++S KKRE+LY+ +     I I
Sbjct: 53  EIIGVDEAGRGPLAGPVVAAAVKIKDYNSELDEINDSKQLSEKKREKLYDVVKEHFYIGI 112

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS---ALIDGRSIPEDLPCQAFAVIKGD 140
             A  + ID+ NI  AT  A+  A+ENL+         L+DG     +   +   VIKGD
Sbjct: 113 GVADSKEIDEINILNATFLAMRRALENLKKECSGEYLVLVDGNFKIREYKGRQEPVIKGD 172

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
             SLSIAAASIIAKVTRDR+MR    KYP YGF+ H GY T +H+  I++ G   +HR +
Sbjct: 173 GKSLSIAAASIIAKVTRDRIMREEAIKYPLYGFEKHKGYGTKQHRDAIEKYGVLEMHRKS 232

Query: 201 F 201
           F
Sbjct: 233 F 233


>gi|291614100|ref|YP_003524257.1| ribonuclease H [Sideroxydans lithotrophicus ES-1]
 gi|291584212|gb|ADE11870.1| Ribonuclease H [Sideroxydans lithotrophicus ES-1]
          Length = 191

 Score =  142 bits (357), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/184 (45%), Positives = 119/184 (64%), Gaps = 4/184 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           + G+DE GRG LAGPV  AA+ILD +    G+ DSKK+S ++R++L   I   A+  +++
Sbjct: 7   ICGVDEAGRGPLAGPVSAAAVILDKSRPIEGLADSKKLSERQRDQLAPLIRERALAWAVA 66

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            A  + ID+ NI +ATL A+  AV  L   P+  L+DG   P+  +P QA  ++KGDS  
Sbjct: 67  YAEVEEIDRLNILQATLLAMKRAVLALHTQPQQVLVDGLYCPQTGIPSQA--IVKGDSKV 124

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AK  RD LM   H++YP YGFD H GYPTA H   +++ G S +HR +FRP
Sbjct: 125 AAISAASILAKTARDELMLKMHEQYPQYGFDGHKGYPTAAHLAALRQHGVSDVHRRSFRP 184

Query: 204 LRNL 207
           +R L
Sbjct: 185 VREL 188


>gi|322411764|gb|EFY02672.1| ribonuclease HII [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 256

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 87/204 (42%), Positives = 127/204 (62%), Gaps = 12/204 (5%)

Query: 14  LEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           LEAM+  EK ++      +AGIDEVGRG LAGPVV A +IL  +    G+NDSKKI   K
Sbjct: 55  LEAMLSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHFKIKGLNDSKKIPKAK 114

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR 123
            E +Y+ +   A+ I I    +Q ID+ NI++AT  A+  A++ L+     P   LID  
Sbjct: 115 HETIYQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAM 174

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           ++   +P Q+  +IKGD+ SLSIAAASI+AKVTRD++M    + +P YGF  + GY T +
Sbjct: 175 TLDIAIPQQS--IIKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKE 232

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H   ++  G + IHR +F P++++
Sbjct: 233 HLDGLRTHGITPIHRKSFEPIKSM 256


>gi|71910696|ref|YP_282246.1| ribonuclease HII [Streptococcus pyogenes MGAS5005]
 gi|71853478|gb|AAZ51501.1| ribonuclease HII [Streptococcus pyogenes MGAS5005]
          Length = 263

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 83/197 (42%), Positives = 121/197 (61%), Gaps = 6/197 (3%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  + +K    +AGIDEVGRG LAGPVV A +IL       G+NDSKKI   K E +Y+ 
Sbjct: 62  EKALYKKGYKAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKAKHETIYQA 121

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLP 130
           +   A+ I I    +Q ID+ NI++AT  A+  A++ L+     P   LID  ++  D+ 
Sbjct: 122 VKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTL--DIA 179

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               +++KGD+ SLSIAAASI+AKVTRD++M    + +P YGF  + GY T +H Q +K 
Sbjct: 180 ISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQGLKA 239

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR +F P++++
Sbjct: 240 YGITPIHRKSFEPVKSM 256


>gi|254429946|ref|ZP_05043653.1| ribonuclease HII [Alcanivorax sp. DG881]
 gi|196196115|gb|EDX91074.1| ribonuclease HII [Alcanivorax sp. DG881]
          Length = 220

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 86/180 (47%), Positives = 114/180 (63%), Gaps = 2/180 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA++LDP +   G+ DSKKIS KKR  L  +I S A+  ++ 
Sbjct: 32  VAGVDEVGRGPLVGAVVTAAVVLDPQHPIAGLADSKKISEKKRLALEAEIKSHALGWALG 91

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L +  ++ L+DG  +P  LPC + AV+KGD    
Sbjct: 92  RAEPAEIDELNILHATMLAMQRAVAGLPMAAQAVLVDGNRVPA-LPCPSQAVVKGDGRVP 150

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKV RDR M   H +YP YGFD H GYPTA H   +++ G    HR +F P+
Sbjct: 151 AISAASILAKVARDREMHALHARYPQYGFDRHKGYPTAVHMAALEQHGALAEHRRSFGPV 210


>gi|71279195|ref|YP_268311.1| ribonuclease HII [Colwellia psychrerythraea 34H]
 gi|97182381|sp|Q485F4|RNH2_COLP3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|71144935|gb|AAZ25408.1| ribonuclease HII [Colwellia psychrerythraea 34H]
          Length = 217

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 88/193 (45%), Positives = 113/193 (58%), Gaps = 12/193 (6%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
           + +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L  +I   AI  S
Sbjct: 16  YCIAGVDEVGRGPLVGDVVTAAVILDPDNPIEGLMDSKKLSEKKRNLLSLEIKEKAISWS 75

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-----------EDLPC 131
           +  AS Q ID  NI  AT+ A+  AVE L V P   L+DG   P           ++L  
Sbjct: 76  LGRASPQEIDTLNILHATMLAMQRAVEGLNVEPDFVLVDGNRCPTFLCNASESNQQNLKI 135

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
            + AV+KGD+    I+AASIIAKV RD  M    K +P+YGF  H GYPT  H + I E 
Sbjct: 136 ASQAVVKGDARVTEISAASIIAKVARDNEMIALDKLHPEYGFAKHKGYPTKLHLEKIIEH 195

Query: 192 GPSCIHRLTFRPL 204
           G    +R +F+P+
Sbjct: 196 GVLDCYRQSFKPV 208


>gi|284102975|ref|ZP_06386058.1| Ribonuclease HII [Candidatus Poribacteria sp. WGA-A3]
 gi|283830303|gb|EFC34542.1| Ribonuclease HII [Candidatus Poribacteria sp. WGA-A3]
          Length = 216

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 86/198 (43%), Positives = 119/198 (60%), Gaps = 2/198 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P  +LE   R +    VAG+DE GRG LAGPVV AA+I+        ++DSKK+S  +RE
Sbjct: 13  PTCDLEEEARTRGYRRVAGLDEAGRGPLAGPVVGAAVIVPRRFSLRSLDDSKKVSPTERE 72

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            L+  IT SA    I  AS   ID  N+ +AT  A   A+  L++ P   L+DG  +  D
Sbjct: 73  ALFSVITESATAWGIGVASEAEIDSLNVLRATWLAWQRAINQLRIPPDFLLVDGH-LGAD 131

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           +     +VI GD +S SIAAASI+AKV RDR+M   H++ P Y F  H GYPT +H +++
Sbjct: 132 VFIPHRSVIHGDRLSSSIAAASILAKVFRDRIMCEYHERDPRYRFHIHKGYPTPEHLRLL 191

Query: 189 KEKGPSCIHRLTFRPLRN 206
           ++ GPS +HR +F P+R 
Sbjct: 192 RQFGPSPVHRHSFGPVRR 209


>gi|238763964|ref|ZP_04624920.1| Ribonuclease HII [Yersinia kristensenii ATCC 33638]
 gi|238697781|gb|EEP90542.1| Ribonuclease HII [Yersinia kristensenii ATCC 33638]
          Length = 183

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 82/180 (45%), Positives = 109/180 (60%), Gaps = 2/180 (1%)

Query: 29  IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSAS 87
           +DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++I   A+  S+  A 
Sbjct: 1   MDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEIIDKALSWSLGRAE 60

Query: 88  HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147
            + ID  NI  AT+ A+  AV  L + P   LIDG   P+ L   + AV+KGDS    I+
Sbjct: 61  PEEIDHLNILHATMLAMQRAVAGLHIAPDYVLIDGNRCPK-LAMPSLAVVKGDSRVAEIS 119

Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           AASI+AKVTRDR M     ++P YGF  H GYPTA H + +   G +  HR +F P++ +
Sbjct: 120 AASILAKVTRDREMTELDLQFPGYGFAQHKGYPTAVHLEKLAALGATEHHRRSFGPVKRV 179


>gi|302344581|ref|YP_003809110.1| ribonuclease H [Desulfarculus baarsii DSM 2075]
 gi|301641194|gb|ADK86516.1| Ribonuclease H [Desulfarculus baarsii DSM 2075]
          Length = 217

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 79/178 (44%), Positives = 114/178 (64%), Gaps = 4/178 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG DE GRG LAGPVV AA++L  +    G++DSK++S  +RE L E+I + A   +++
Sbjct: 29  LAGADEAGRGPLAGPVVAAAVMLRADWPDPGVDDSKRLSAARREFLAERIKADAAGWAVA 88

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-PEDLPCQAFAVIKGDSIS 143
                 ID+ NIH A+L A+  AVE L+  P   L+DGR + P DLP +A  V+ GD+  
Sbjct: 89  VVEADEIDRLNIHNASLLAMSRAVEQLRPRPDFLLVDGRFVTPLDLPQKA--VVGGDASC 146

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             IAAASI+AKV RD LM   H+++P Y F ++ GYPT +H++ +   GP  IHR ++
Sbjct: 147 RCIAAASILAKVWRDGLMARLHERWPQYNFAANKGYPTPQHKEALARFGPCPIHRRSY 204


>gi|224476370|ref|YP_002633976.1| ribonuclease HII [Staphylococcus carnosus subsp. carnosus TM300]
 gi|254807988|sp|B9DPH3|RNH2_STACT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|222420977|emb|CAL27791.1| putative RNase HII [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 261

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/183 (43%), Positives = 116/183 (63%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK-ITSSAIISIS 84
           + GIDEVGRG LAGPVV  A+IL+ ++  +G++DSKK+S   R++L E  I  +   +  
Sbjct: 74  ICGIDEVGRGPLAGPVVACAVILNADHAYYGLDDSKKVSAANRQKLSEALIEKTTAYAYG 133

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A+ + ID  NI++AT  A+  A+ENL V P   LID   +P D+     ++IKGD+ S+
Sbjct: 134 IATPEEIDDLNIYQATQVAMMRAIENLNVTPTHLLIDAMELPLDIA--QTSIIKGDAKSV 191

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASI+AK  RD  MR   ++YP Y F+ +VGY T  H + IK  G    HR +F P+
Sbjct: 192 SIAAASILAKEHRDTYMRQLAEQYPGYDFEHNVGYGTKAHLEGIKRLGIIPEHRKSFEPI 251

Query: 205 RNL 207
           +++
Sbjct: 252 KSI 254


>gi|302389636|ref|YP_003825457.1| RNase HII [Thermosediminibacter oceani DSM 16646]
 gi|302200264|gb|ADL07834.1| RNase HII [Thermosediminibacter oceani DSM 16646]
          Length = 237

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/191 (47%), Positives = 120/191 (62%), Gaps = 2/191 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F  E ++ E+    +AG+DE GRG LAGPVV AA+IL  +     +NDSK +S K+RE +
Sbjct: 38  FARERLLSERGYRYIAGVDEAGRGPLAGPVVAAAVILPLDVFILKLNDSKLLSEKQREAV 97

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           YE+I   A+ ++ S    +YID+HNI  ATL A+  AV+ L V P   L+D   IP  L 
Sbjct: 98  YEEIKQKAVAVNFSVVDEKYIDEHNILNATLHAMQKAVQGLSVKPDIVLVDALKIP-GLD 156

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            Q   +I GD +  SIAAASIIAKV RDR+M+  H+ YP Y F ++ GY T KH + IK+
Sbjct: 157 VQQENIIHGDRLCASIAAASIIAKVERDRIMKNYHELYPHYDFCNNKGYCTKKHVESIKK 216

Query: 191 KGPSCIHRLTF 201
            G S IHR +F
Sbjct: 217 YGLSPIHRRSF 227


>gi|103486453|ref|YP_616014.1| ribonuclease HII [Sphingopyxis alaskensis RB2256]
 gi|122985137|sp|Q1GUJ1|RNH2_SPHAL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|98976530|gb|ABF52681.1| Ribonuclease H [Sphingopyxis alaskensis RB2256]
          Length = 198

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 78/184 (42%), Positives = 113/184 (61%), Gaps = 2/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           + G+DE GRG LAGPVV AA++L    I  G++DSKK+S ++R  L   I +     I  
Sbjct: 16  IVGVDEAGRGPLAGPVVAAAVLLCEGGIA-GLDDSKKLSARRRGALESAIRAQCRWGIGE 74

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           AS + ID+ NI +AT  A+  AVE L   P   L+DG  +P     QA A++ GD++   
Sbjct: 75  ASVEEIDRINILQATFLAMTRAVEALGFEPAEVLVDGNRLPR-WRYQARAIVGGDALHPC 133

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AK  RDRLM  A + YP +G++S++GY TA+H   ++  GP+  HR +F P+ 
Sbjct: 134 ISAASILAKQHRDRLMIAAAQDYPAFGWESNMGYGTAQHLAALRRHGPTPHHRTSFAPVA 193

Query: 206 NLSV 209
            L +
Sbjct: 194 QLQL 197


>gi|257468837|ref|ZP_05632931.1| ribonuclease HII [Fusobacterium ulcerans ATCC 49185]
          Length = 239

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 84/181 (46%), Positives = 109/181 (60%), Gaps = 4/181 (2%)

Query: 25  PVAGIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
            + G+DE GRG LAG VV AA+ I D N+    INDSK+IS KKRE LY+ +     + +
Sbjct: 53  EIIGVDEAGRGPLAGSVVAAAVKIKDYNSDLDEINDSKQISEKKRERLYDVVKEHFYVGV 112

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS---ALIDGRSIPEDLPCQAFAVIKGD 140
             A  + ID+ NI  AT  A+  A+ENL+         L+DG     +   +   ++KGD
Sbjct: 113 GVADAKEIDEINILNATFLAMRRALENLKKECEGEYLVLVDGNFKIREYKGRQEPIVKGD 172

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
             SLSIAAASIIAKVTRDR+MR    KYP YGF+ H GY T +H+  I+E G   IHR +
Sbjct: 173 GKSLSIAAASIIAKVTRDRMMREEAVKYPLYGFEKHKGYGTKQHRDAIEEHGVLDIHRKS 232

Query: 201 F 201
           F
Sbjct: 233 F 233


>gi|325983657|ref|YP_004296059.1| ribonuclease H [Nitrosomonas sp. AL212]
 gi|325533176|gb|ADZ27897.1| Ribonuclease H [Nitrosomonas sp. AL212]
          Length = 190

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 82/183 (44%), Positives = 107/183 (58%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84
           + G+DE GRG LAGPV  A ++L+      G+ DSKK+S  KR  L   I   A   SIS
Sbjct: 2   ICGVDEAGRGPLAGPVYAACVVLNKTLTIDGLADSKKLSETKRNALAVIIKKLAKAWSIS 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS Q ID+ NI +A+L A+  AVE+L   P   LIDG   P  L C    +++GDS+  
Sbjct: 62  YASVQEIDRLNILQASLLAMKRAVESLPFTPDIVLIDGNQSPH-LHCPMRTIVRGDSLIP 120

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AK  RD  M+  H+ +P YGFD H GYPT  H   ++  G   IHR +F P+
Sbjct: 121 EISAASILAKTARDAEMQRLHRHFPRYGFDKHKGYPTKVHLAALQRYGACAIHRQSFAPV 180

Query: 205 RNL 207
           R L
Sbjct: 181 RTL 183


>gi|159028469|emb|CAO87276.1| rnhB [Microcystis aeruginosa PCC 7806]
          Length = 207

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 83/188 (44%), Positives = 116/188 (61%), Gaps = 4/188 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81
           +AG+DEVGRGAL GPVV A ++  P+  P     G+ DSK++S +KR++L ++I    + 
Sbjct: 7   IAGVDEVGRGALFGPVVAAVVVTVPSGFPQLWELGVKDSKQLSPQKRQKLSQQIQRDFVC 66

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
            I  A+ + ID+ NI  A+L A+  A+  L + P   LIDG+ I +DL     AVI+GD 
Sbjct: 67  RIGYATVKEIDRLNILHASLLAMSRAIGKLPLSPSLCLIDGKHIIKDLSIPQKAVIQGDQ 126

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            S  IAAASI+AKV RD L+   H +YPDYG   H GY TA+H + I   G +  HRL+F
Sbjct: 127 QSPVIAAASIVAKVWRDDLIARWHGRYPDYGLPRHKGYGTAQHLEAIGNHGLTSQHRLSF 186

Query: 202 RPLRNLSV 209
            P + + V
Sbjct: 187 SPCQQIRV 194


>gi|116621683|ref|YP_823839.1| RNase HII [Candidatus Solibacter usitatus Ellin6076]
 gi|122254551|sp|Q024M2|RNH2_SOLUE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|116224845|gb|ABJ83554.1| RNase HII [Candidatus Solibacter usitatus Ellin6076]
          Length = 228

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 116/193 (60%), Gaps = 3/193 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
           LE  +R +    VAG+DEVGRGAL G V   A+IL       G+NDSK++  ++RE L  
Sbjct: 16  LERELRARGFRAVAGVDEVGRGALFGAVFAGAVILSEERPIRGLNDSKQLDPERREVLAG 75

Query: 74  KITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   A+  SI++     ID  NI++A+  A+  AV  L   P   L+D  ++P +    
Sbjct: 76  RIRERAVAWSIAAVDASTIDSINIYQASRMAMRIAVSRLSPAPDFLLVD--AVPLEFAVP 133

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             A+IKGD    +IAAASI+AKV RD  MR+  K +P+YG  SH GY T +H + I++ G
Sbjct: 134 QRALIKGDERCHAIAAASILAKVARDECMRVWDKVFPEYGLASHKGYSTPEHYRAIEQYG 193

Query: 193 PSCIHRLTFRPLR 205
           P+ +HRL+F P+R
Sbjct: 194 PTPLHRLSFEPVR 206


>gi|58038820|ref|YP_190784.1| ribonuclease HII [Gluconobacter oxydans 621H]
 gi|81352528|sp|Q5FU18|RNH2_GLUOX RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|58001234|gb|AAW60128.1| Ribonuclease HII [Gluconobacter oxydans 621H]
          Length = 207

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 88/203 (43%), Positives = 121/203 (59%), Gaps = 10/203 (4%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHK 66
           P + LEA     +   V GIDEVGRG LAGPVV +A+         +   ++DSKK++ +
Sbjct: 2   PDYALEA----AHGGLVVGIDEVGRGPLAGPVVASAVAFTAPPSETLSSLLDDSKKLTAR 57

Query: 67  KREELYEKITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           +R   YE + +   A+I I +AS   I++ NI +A   A+  A+  L   P  AL+DG+ 
Sbjct: 58  RRMLAYEALMADEQALIGIGAASVAEIERINIAQACYLAMRRALSRLGCTPDLALVDGKH 117

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
            P+ LPC    VI GD ISLSIAAASIIAKVTRDRLM     ++  YG++ + GY TA H
Sbjct: 118 APK-LPCPIKMVIGGDGISLSIAAASIIAKVTRDRLMVRLAVRHDAYGWERNAGYGTAAH 176

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
            Q +K +G +  HR  F P+RN+
Sbjct: 177 MQGLKLRGVTPHHRRGFAPIRNM 199


>gi|330444662|ref|YP_004377648.1| ribonuclease HII [Chlamydophila pecorum E58]
 gi|328807772|gb|AEB41945.1| ribonuclease HII [Chlamydophila pecorum E58]
          Length = 209

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 86/194 (44%), Positives = 122/194 (62%), Gaps = 4/194 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  + ++    VAG+DE GRG LAGPVV  A IL  N +  GINDSK+++ K+R  + E
Sbjct: 12  FERELAQEGFTLVAGVDEAGRGPLAGPVVAGACILPKNKVFLGINDSKQLTPKQRGLIRE 71

Query: 74  KIT--SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +   S  I  I   S + ID+ NI +AT +A++ A+ +L ++P   L+DG  +   +PC
Sbjct: 72  TLLCDSEVISGIGVVSVERIDEINILEATKEAMHQAIASLSLVPDFLLVDGLHLSHRVPC 131

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   +IKGD+ S SIAAASI+AK  RD LMR  H+KYP+YGFD H GY TA H + ++  
Sbjct: 132 KK--IIKGDARSASIAAASILAKEHRDDLMRDLHQKYPEYGFDKHKGYGTAAHMEALRRY 189

Query: 192 GPSCIHRLTFRPLR 205
           G S  HR +F P++
Sbjct: 190 GASPCHRRSFSPVK 203


>gi|302038368|ref|YP_003798690.1| ribonuclease HII [Candidatus Nitrospira defluvii]
 gi|300606432|emb|CBK42765.1| Ribonuclease HII [Candidatus Nitrospira defluvii]
          Length = 224

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 90/206 (43%), Positives = 121/206 (58%), Gaps = 12/206 (5%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P  E E   R +    +AG+DE GRG LAGPVV AA++L       G+NDSK++    R 
Sbjct: 12  PTEEFEVEARCRGYRHIAGLDEAGRGPLAGPVVAAAVVLPRRCSLPGLNDSKQVGESDRV 71

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID-----GR 123
            L+ +I   A  + I +A+   ID+ NI  AT  A+  A+E L + P   L+D     G 
Sbjct: 72  RLFVEIVRRATGVGIGAATEAEIDQLNILHATRLAMRRALEALPLQPDFLLLDAVTLSGL 131

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           SIP+       ++IKGD +S SIAAASIIAKVTRDRLM   H+ YP Y F  H GY T +
Sbjct: 132 SIPQR------SIIKGDGLSCSIAAASIIAKVTRDRLMVEYHRWYPQYNFAEHKGYGTPE 185

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLSV 209
           H ++++E GP  IHR +F P++ L V
Sbjct: 186 HLRLLREHGPCAIHRRSFAPVQQLCV 211


>gi|170727606|ref|YP_001761632.1| ribonuclease HII [Shewanella woodyi ATCC 51908]
 gi|238688705|sp|B1KNS9|RNH2_SHEWM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|169812953|gb|ACA87537.1| Ribonuclease H [Shewanella woodyi ATCC 51908]
          Length = 213

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 89/188 (47%), Positives = 118/188 (62%), Gaps = 10/188 (5%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK++ KKRE L+ +I   A+ I++  
Sbjct: 21  AGVDEVGRGPLVGNVVTAAVILDPNNPITGLNDSKKLTEKKRELLFAEIHEKALCINVGH 80

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--------EDLPCQAFAVI 137
           A+   ID+ NI  AT+ A+  AV  L + P S L+DG   P        ED   +A AV+
Sbjct: 81  ATPDEIDELNILHATMLAMQRAVAGLDIKPLSVLVDGNRTPAFYHGEETEDR-IEAHAVV 139

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGD +  +I+AASIIAKV RDR M +   +YP YGF  H GYPT  H + ++  G    H
Sbjct: 140 KGDGLISAISAASIIAKVIRDREMDLLDMEYPQYGFAKHKGYPTKAHFEALELHGVLPEH 199

Query: 198 RLTFRPLR 205
           R +FRP++
Sbjct: 200 RKSFRPVK 207


>gi|325294887|ref|YP_004281401.1| ribonuclease H [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065335|gb|ADY73342.1| Ribonuclease H [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 236

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 83/193 (43%), Positives = 112/193 (58%), Gaps = 7/193 (3%)

Query: 20  EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E+  W      +AGIDE GRG LAGPVV AA+I   + IPF   DSKK++ K+R+EL+ K
Sbjct: 11  EREYWNKGYKLIAGIDEAGRGPLAGPVVAAAVIFPQSVIPFLFKDSKKLTEKRRKELFFK 70

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI + +  A    IDK NI  AT  A+  A+ +L V P   + D   I E+   ++
Sbjct: 71  IFEKAICVGVGFADSLEIDKLNILNATKLAVKRALSSLPVQPDFLITDALEI-EEFKDRS 129

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             + KGD  S S A AS++AKVTRD +M    + +P YGF+ H GYPT  H   I+E G 
Sbjct: 130 LVLTKGDEKSFSCACASVVAKVTRDFIMEKLAELFPAYGFEKHKGYPTKFHISKIEEIGI 189

Query: 194 SCIHRLTFRPLRN 206
           S +HR +F  +R 
Sbjct: 190 SPVHRRSFGRVRE 202


>gi|323705455|ref|ZP_08117030.1| Ribonuclease H [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535357|gb|EGB25133.1| Ribonuclease H [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 252

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 83/177 (46%), Positives = 109/177 (61%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG LAGPVV   +IL   +    I+DSKK+S  KRE L E I   AI   I 
Sbjct: 70  IGGIDEVGRGPLAGPVVAGCVILPKQSFIPDIDDSKKLSESKRELLSEIIKKKAIAYGIG 129

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
              ++ ID+ NI  +T +A+  A+ NL +     L+D  +IP D+      +IKGD+ S+
Sbjct: 130 IIDNEQIDRINILNSTYEAMKVAISNLNIKADFLLVDAITIP-DIDIAQIPIIKGDAKSI 188

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SIAAASI+AKVTRD +MR   + YP YGF  + GY T +H + IK+ GP  IHR TF
Sbjct: 189 SIAAASIVAKVTRDNIMRKYDEMYPQYGFCKNKGYGTKEHIEAIKKYGPCPIHRKTF 245


>gi|262067279|ref|ZP_06026891.1| ribonuclease HII [Fusobacterium periodonticum ATCC 33693]
 gi|291379005|gb|EFE86523.1| ribonuclease HII [Fusobacterium periodonticum ATCC 33693]
          Length = 217

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 84/183 (45%), Positives = 115/183 (62%), Gaps = 7/183 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84
           V G+DE GRG LAGPVV AA+IL   +     INDSKK++ KKRE+LY+ I ++  +++ 
Sbjct: 15  VIGVDEAGRGPLAGPVVAAAVILKQYSEELDEINDSKKLTEKKREKLYDIILNNFNVAVG 74

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPCQAFAVIKG 139
            AS + IDK NI  A   A+  A+++L+    +      L+DG    ++   +   V+KG
Sbjct: 75  IASVEEIDKLNILNADFLAMRRALKDLEKFHEANKDYIVLVDGNLKIKEYEGKQLPVVKG 134

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHR 198
           D+ SLSIAAASIIAKVTRDR+M+    KYPDY F+ + GY T KH + IK KG    +HR
Sbjct: 135 DAKSLSIAAASIIAKVTRDRIMKGLGLKYPDYDFEKNKGYGTKKHVEAIKTKGVLKNVHR 194

Query: 199 LTF 201
             F
Sbjct: 195 KVF 197


>gi|319762189|ref|YP_004126126.1| ribonuclease h [Alicycliphilus denitrificans BC]
 gi|330825999|ref|YP_004389302.1| ribonuclease H [Alicycliphilus denitrificans K601]
 gi|317116750|gb|ADU99238.1| Ribonuclease H [Alicycliphilus denitrificans BC]
 gi|329311371|gb|AEB85786.1| Ribonuclease H [Alicycliphilus denitrificans K601]
          Length = 206

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 83/181 (45%), Positives = 119/181 (65%), Gaps = 4/181 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DE GRG LAGPVV AA+ILD      G+ DSK ++  +RE L+++I + A+  S++
Sbjct: 21  VAGVDEAGRGPLAGPVVAAAVILDDQQPIVGLADSKALTAARRERLFDEIRAKALCCSVA 80

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            AS + ID+ NI +ATL A+  AV+ L++ P  AL+DG  +P  D+P +A  ++KGD+  
Sbjct: 81  EASVEEIDRLNILQATLLAMRRAVQGLRLKPTLALVDGNRLPRLDMPAEA--IVKGDARV 138

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AKVTRDR     H +YP YGF  H GY TA+H   ++  G    HR +F P
Sbjct: 139 AAISAASILAKVTRDRWCAELHAQYPQYGFAGHKGYGTAEHLAALQAHGACPQHRRSFAP 198

Query: 204 L 204
           +
Sbjct: 199 V 199


>gi|258423915|ref|ZP_05686800.1| ribonuclease HII [Staphylococcus aureus A9635]
 gi|257845944|gb|EEV69973.1| ribonuclease HII [Staphylococcus aureus A9635]
          Length = 255

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 85/201 (42%), Positives = 121/201 (60%), Gaps = 4/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +++E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTL- 174

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            D      ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ + GY T +H  
Sbjct: 175 -DNALTQVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G    HR +F P+++L
Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254


>gi|285018804|ref|YP_003376515.1| ribonuclease hII (rnase hII, degrades rna of DNA-rna hybrids)
           protein [Xanthomonas albilineans GPE PC73]
 gi|283474022|emb|CBA16523.1| probable ribonuclease hII (rnase hII, degrades rna of dna-rna
           hybrids) protein [Xanthomonas albilineans]
          Length = 219

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 82/181 (45%), Positives = 115/181 (63%), Gaps = 2/181 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII-SIS 84
           AG+DE GRG LAGPV VAA++ DPN     G++DSK+++  +RE LY +I   A+   + 
Sbjct: 25  AGVDEAGRGPLAGPVAVAAVVFDPNQPRINGLDDSKQLTAARRETLYPRIIERALAWQVV 84

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
               + ID+ NI++AT+  +  AVE +  +   A IDG  +P+ LPC A A+I GD++  
Sbjct: 85  LIEAEEIDRLNIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALDR 144

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I AASIIAKVTRDR+M+  H ++P YGFD H GY T  H   +   GP   HR +F P+
Sbjct: 145 AIMAASIIAKVTRDRIMQHLHAEHPHYGFDLHKGYATPAHLAALAAHGPCPQHRRSFAPV 204

Query: 205 R 205
           R
Sbjct: 205 R 205


>gi|73748590|ref|YP_307829.1| ribonuclease HII [Dehalococcoides sp. CBDB1]
 gi|97182414|sp|Q3ZXD6|RNH2_DEHSC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|73660306|emb|CAI82913.1| ribonuclease HII [Dehalococcoides sp. CBDB1]
          Length = 212

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 82/197 (41%), Positives = 114/197 (57%), Gaps = 5/197 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREEL 71
           E ++R++    +AG+DE GRG LAGPVV  A+I+ P    +    + DSK +S  KRE L
Sbjct: 13  EKLLRKQGFILIAGLDEAGRGCLAGPVVAGAVIMPPRLKGDWVEMVRDSKVLSPAKREYL 72

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y  I S A+   + +  ++ ID   I  AT  A+  AVE+L   P   L+D   +P D+P
Sbjct: 73  YCHIVSMAVTFGVGAVDNEQIDSMGIAPATRLAMKQAVEDLTCQPDFLLVDYLKLP-DIP 131

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                ++ GD++  SIA ASI+AKV+RDRLM     +YP Y    H GY TA H + I +
Sbjct: 132 LPQKGIVNGDALCFSIACASIVAKVSRDRLMSKLDMEYPGYYLAKHKGYGTALHVECICQ 191

Query: 191 KGPSCIHRLTFRPLRNL 207
           KG S IHR TF PL+ +
Sbjct: 192 KGISPIHRRTFAPLKGM 208


>gi|205373355|ref|ZP_03226159.1| ribonuclease HII [Bacillus coahuilensis m4-4]
          Length = 253

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 89/194 (45%), Positives = 128/194 (65%), Gaps = 8/194 (4%)

Query: 20  EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           EK +W      +AG+DEVGRG LAGPVV AA+IL  +    G++DSKK++  K+EE+++ 
Sbjct: 60  EKKLWEGGIKRIAGVDEVGRGPLAGPVVAAAVILPQSFYYPGLDDSKKLTESKKEEMFDY 119

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I ++AI +S+S  +H  ID  NI++AT  A+  A+  L + P   LID   +   +  + 
Sbjct: 120 INATAISVSVSIINHDVIDTVNIYEATKLAMQQAINGLDLTPEYLLIDAMKL--SMGIEE 177

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++IKGDS S+SIAAASIIAKVTRDRLM+     YP Y F+ ++GY T +H + +K  GP
Sbjct: 178 ESIIKGDSKSISIAAASIIAKVTRDRLMKEYATTYPHYAFERNMGYGTTEHLEGLKSVGP 237

Query: 194 SCIHRLTFRPLRNL 207
           S IHR +F P++ L
Sbjct: 238 SPIHRRSFAPIKEL 251


>gi|304388999|ref|ZP_07371046.1| ribonuclease HII [Neisseria meningitidis ATCC 13091]
 gi|304337133|gb|EFM03320.1| ribonuclease HII [Neisseria meningitidis ATCC 13091]
          Length = 194

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 83/184 (45%), Positives = 112/184 (60%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKI-TSSAIISI 83
            AG+DE GRG L G V  AA+IL +  ++P G+ DSKK+S KKR+ L E I   +A   +
Sbjct: 5   TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDTLAEMIKNQAAAWHV 63

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           S+A+ + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  
Sbjct: 64  SAATPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKI 123

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           + I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P
Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183

Query: 204 LRNL 207
           +RNL
Sbjct: 184 VRNL 187


>gi|196228537|ref|ZP_03127404.1| Ribonuclease H [Chthoniobacter flavus Ellin428]
 gi|196227940|gb|EDY22443.1| Ribonuclease H [Chthoniobacter flavus Ellin428]
          Length = 202

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 83/194 (42%), Positives = 117/194 (60%), Gaps = 3/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +R      VAGIDEVGRG LAGPVV AA+IL        +NDSKK+S ++RE++Y +
Sbjct: 4   ERKLRADGCVLVAGIDEVGRGPLAGPVVAAAVILPEKFRHKTLNDSKKLSAEQREKIYAE 63

Query: 75  ITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +T+   +  ++     + ID+ NI +A+ +A+  +V  L   P  ALIDG  +    P  
Sbjct: 64  LTTRENVHWTVCVVEVEEIDRINILRASHEAMRRSVTALATKPDHALIDGLPV-RPFPIP 122

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             A++ GD++S SIAAAS+IAKVTRDR+M    +++P Y F  H GY T  H   +KE G
Sbjct: 123 HTALVGGDALSFSIAAASVIAKVTRDRIMVEMDQRHPGYAFGQHKGYGTELHLARLKEHG 182

Query: 193 PSCIHRLTFRPLRN 206
           P  IHR +F P+  
Sbjct: 183 PCPIHRRSFLPVEQ 196


>gi|147669350|ref|YP_001214168.1| ribonuclease H [Dehalococcoides sp. BAV1]
 gi|289432616|ref|YP_003462489.1| ribonuclease H [Dehalococcoides sp. GT]
 gi|189043591|sp|A5FR86|RNH2_DEHSB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|146270298|gb|ABQ17290.1| Ribonuclease H [Dehalococcoides sp. BAV1]
 gi|288946336|gb|ADC74033.1| Ribonuclease H [Dehalococcoides sp. GT]
          Length = 212

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 82/197 (41%), Positives = 114/197 (57%), Gaps = 5/197 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREEL 71
           E ++R++    +AG+DE GRG LAGPVV  A+I+ P    +    + DSK +S  KRE L
Sbjct: 13  EKLLRKQGFILIAGLDEAGRGCLAGPVVAGAVIMPPRLKGDWVEMVRDSKVLSPAKREYL 72

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y  I S A+   + +  ++ ID   I  AT  A+  AVE+L   P   L+D   +P D+P
Sbjct: 73  YCHIVSMAVTFGVGAVDNEQIDSMGIAPATRLAMKQAVEDLTCQPDFLLVDYLKLP-DIP 131

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                ++ GD++  SIA ASI+AKV+RDRLM     +YP Y    H GY TA H + I +
Sbjct: 132 LPQKGIVDGDALCFSIACASIVAKVSRDRLMSKLDMEYPGYYLAKHKGYGTALHVECICQ 191

Query: 191 KGPSCIHRLTFRPLRNL 207
           KG S IHR TF PL+ +
Sbjct: 192 KGISPIHRRTFAPLKGM 208


>gi|239636276|ref|ZP_04677278.1| putative ribonuclease HII [Staphylococcus warneri L37603]
 gi|239597631|gb|EEQ80126.1| putative ribonuclease HII [Staphylococcus warneri L37603]
          Length = 256

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 81/195 (41%), Positives = 120/195 (61%), Gaps = 9/195 (4%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR----EELY 72
           ++ + N   + GIDEVGRG LAGPVV  A+IL+P +   G+NDSKK+S K R    ++L 
Sbjct: 65  ILAQNNKAIICGIDEVGRGPLAGPVVTCAVILNPGHRYLGLNDSKKVSAKNRVILNQQLK 124

Query: 73  EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           E +T  A    +SA    ID+ NI++AT  A+  A++ L + P   LID  ++  ++   
Sbjct: 125 EGVTDYAYGIATSAE---IDEMNIYQATRLAMQRAIDQLNIRPTQLLIDAMTLDNEIS-- 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SIAAASI+AK  RD  M+   K+YP Y F+ +VGY T  H + I + G
Sbjct: 180 QTSIIKGDAKSVSIAAASIMAKEYRDHYMKELAKQYPGYDFEKNVGYGTKAHLEGIAQNG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR TF P++++
Sbjct: 240 VISEHRKTFEPIKSI 254


>gi|88857963|ref|ZP_01132605.1| RNAse HII [Pseudoalteromonas tunicata D2]
 gi|88819580|gb|EAR29393.1| RNAse HII [Pseudoalteromonas tunicata D2]
          Length = 194

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 81/187 (43%), Positives = 114/187 (60%), Gaps = 2/187 (1%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81
           N   +AG+DEVGRG L G VV AA+ILDP     G+ DSKK++ KKR+ L  +I   A+ 
Sbjct: 7   NYQFIAGVDEVGRGPLVGDVVTAAVILDPTKPIVGLADSKKLTDKKRQALAIEIKEKALC 66

Query: 82  -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             I+ AS   ID+ NI  AT+ A+  AV  L +      +DG  +P+ L   A AV+KGD
Sbjct: 67  YCIARASVAEIDELNILHATMLAMTRAVAGLSIPAEFVFVDGNRLPK-LSVPAQAVVKGD 125

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S+   I+AASI+AKV RD  M     ++P+YGF  H GYPT  H + +++ G +  HR +
Sbjct: 126 SLVAEISAASILAKVARDDEMIALDAQFPEYGFAGHKGYPTKAHLEALQQHGVTEHHRKS 185

Query: 201 FRPLRNL 207
           F+P++ L
Sbjct: 186 FKPVKIL 192


>gi|317063087|ref|ZP_07927572.1| ribonuclease HII [Fusobacterium ulcerans ATCC 49185]
 gi|313688763|gb|EFS25598.1| ribonuclease HII [Fusobacterium ulcerans ATCC 49185]
          Length = 216

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 84/181 (46%), Positives = 109/181 (60%), Gaps = 4/181 (2%)

Query: 25  PVAGIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
            + G+DE GRG LAG VV AA+ I D N+    INDSK+IS KKRE LY+ +     + +
Sbjct: 30  EIIGVDEAGRGPLAGSVVAAAVKIKDYNSDLDEINDSKQISEKKRERLYDVVKEHFYVGV 89

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS---ALIDGRSIPEDLPCQAFAVIKGD 140
             A  + ID+ NI  AT  A+  A+ENL+         L+DG     +   +   ++KGD
Sbjct: 90  GVADAKEIDEINILNATFLAMRRALENLKKECEGEYLVLVDGNFKIREYKGRQEPIVKGD 149

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
             SLSIAAASIIAKVTRDR+MR    KYP YGF+ H GY T +H+  I+E G   IHR +
Sbjct: 150 GKSLSIAAASIIAKVTRDRMMREEAVKYPLYGFEKHKGYGTKQHRDAIEEHGVLDIHRKS 209

Query: 201 F 201
           F
Sbjct: 210 F 210


>gi|296110320|ref|YP_003620701.1| ribonuclease HII [Leuconostoc kimchii IMSNU 11154]
 gi|295831851|gb|ADG39732.1| ribonuclease HII [Leuconostoc kimchii IMSNU 11154]
          Length = 254

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 84/198 (42%), Positives = 118/198 (59%), Gaps = 3/198 (1%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E     + M  +AG+DEVGRG LAGPV+ AA+IL  +     + DSK++S  KR++
Sbjct: 58  RFAFERHFWNQGMSDIAGVDEVGRGPLAGPVIAAAVILPHDFNVVEVIDSKQLSADKRDK 117

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY+ I + A+ I +       ID  NI++A   A+  AV+NL   P   LID  ++  +L
Sbjct: 118 LYDLILAQAVSIGVGVVDAPTIDDINIYQAARLAMTKAVQNLAPEPDVLLIDAMTL--NL 175

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +IKGD++S SI AASI+AKVTRDRLM      YP YGF  + GY T  H   ++
Sbjct: 176 PLPQEPLIKGDALSNSIGAASIVAKVTRDRLMADYDDIYPGYGFAKNAGYGTKLHLDQMR 235

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + G + IHR +F P+R+L
Sbjct: 236 QLGITPIHRRSFGPVRDL 253


>gi|34763383|ref|ZP_00144335.1| Ribonuclease HII [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|294786017|ref|ZP_06751304.1| ribonuclease HII [Fusobacterium sp. 3_1_27]
 gi|27886956|gb|EAA24076.1| Ribonuclease HII [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|294486354|gb|EFG33717.1| ribonuclease HII [Fusobacterium sp. 3_1_27]
          Length = 214

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 83/189 (43%), Positives = 117/189 (61%), Gaps = 8/189 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84
           V G+DE GRG LAGPVV AA+IL   +     INDSKK++ K RE+LY+ I  +  +++ 
Sbjct: 19  VIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSKKLTEKTREKLYDIIMKNFYVAVG 78

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPR-----SALIDGRSIPEDLPCQAFAVIKG 139
            ++ + IDK NI  A   A+  A+++L+ I +     + L+DG    ++   +   ++KG
Sbjct: 79  VSTVEEIDKLNILNADFLAMRRALKDLENIKKDKKEYTVLVDGNLKIKEYTGKQLPIVKG 138

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHR 198
           D+ SLSIAAASIIAKVTRDRLM+     YPDY F+ H GY T  H + IK+KG    +HR
Sbjct: 139 DAKSLSIAAASIIAKVTRDRLMKDLASVYPDYHFEKHKGYGTKAHIEAIKDKGAIEGVHR 198

Query: 199 LTF-RPLRN 206
             F R + N
Sbjct: 199 KVFLRKINN 207


>gi|119505680|ref|ZP_01627750.1| Ribonuclease H [marine gamma proteobacterium HTCC2080]
 gi|119458492|gb|EAW39597.1| Ribonuclease H [marine gamma proteobacterium HTCC2080]
          Length = 199

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 79/183 (43%), Positives = 114/183 (62%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84
           +AG+DEVGRG LAG VV AA+I   +++P G+ DSKK++ K+RE+L   I SSA    ++
Sbjct: 17  IAGVDEVGRGPLAGDVVAAAVIFG-DSVPAGVTDSKKLTAKRREQLAVAIKSSARAWCVA 75

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID  NI +A+L A++ AV+ L + P   L+DG  +P     ++  +I GD++ +
Sbjct: 76  RASVAEIDSLNILQASLLAMHRAVDGLSLAPEFVLVDGNRLPS-WNYKSKPIIGGDALEV 134

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI AASI+AKV RD  M     +YP YGF  H GYPT +H   +   G +  HR +F P+
Sbjct: 135 SIGAASILAKVQRDAEMVALDDEYPGYGFARHKGYPTREHMAALAALGVTPWHRKSFAPV 194

Query: 205 RNL 207
           + L
Sbjct: 195 KRL 197


>gi|299140089|ref|ZP_07033258.1| Ribonuclease H [Acidobacterium sp. MP5ACTX8]
 gi|298597935|gb|EFI54104.1| Ribonuclease H [Acidobacterium sp. MP5ACTX8]
          Length = 257

 Score =  141 bits (355), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 82/208 (39%), Positives = 120/208 (57%), Gaps = 13/208 (6%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN---IPFGI 57
           + C+  PE+        +R +    +AG+DEVGRGAL GPVV AA+IL          G+
Sbjct: 26  LICSDAPEQ-------ALRYQGFQSIAGVDEVGRGALFGPVVAAAVILPEKTGILARMGL 78

Query: 58  NDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116
            DSK+++ + RE L  KI + A+ ++I+      ID+ NI++A+  A+  AV+ L + P 
Sbjct: 79  KDSKQLTREDRERLDRKIRTMALAVAIAEVDAATIDRVNIYQASRMAMLMAVQQLGIAPD 138

Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
             +ID   I  D PC    +  GD++ LSIAAAS++AKV RD L+R     YP YG  SH
Sbjct: 139 HLIIDAMRI--DHPCPQTKLYYGDALCLSIAAASVVAKVYRDGLLREFDTVYPQYGLASH 196

Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            GY T +H++ +   GP  +HR TF P+
Sbjct: 197 KGYGTPEHRRALVAHGPCELHRHTFAPV 224


>gi|323127302|gb|ADX24599.1| ribonuclease HII [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 256

 Score =  141 bits (355), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 87/204 (42%), Positives = 127/204 (62%), Gaps = 12/204 (5%)

Query: 14  LEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           LEAM+  EK ++      +AGIDEVGRG LAGPVV A +IL  +    G+NDSKKI   K
Sbjct: 55  LEAMLSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKSK 114

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR 123
            E +Y+ +   A+ I I    +Q ID+ NI++AT  A+  A++ L+     P   LID  
Sbjct: 115 HETIYQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAM 174

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           ++   +P Q+  +IKGD+ SLSIAAASI+AKVTRD++M    + +P YGF  + GY T +
Sbjct: 175 TLDIAIPQQS--IIKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNSGYGTKE 232

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H   ++  G + IHR +F P++++
Sbjct: 233 HLDGLRTHGITPIHRKSFEPIKSM 256


>gi|254282787|ref|ZP_04957755.1| ribonuclease HII [gamma proteobacterium NOR51-B]
 gi|219678990|gb|EED35339.1| ribonuclease HII [gamma proteobacterium NOR51-B]
          Length = 204

 Score =  141 bits (355), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 86/189 (45%), Positives = 115/189 (60%), Gaps = 3/189 (1%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
           E++   VAG+DEVGRG LAG VV AA+IL  +  P GI DSKK+S K+R +L  +I + A
Sbjct: 9   ERSGQRVAGVDEVGRGPLAGDVVAAAVILG-DVSPAGITDSKKLSPKRRAQLAVQIKAEA 67

Query: 80  II-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
              SI  AS   ID+ NI +A+L A+  AVE L + P   L+DG  +P     ++  V+ 
Sbjct: 68  CCWSIGRASVDEIDRLNILEASLLAMTRAVEGLSLRPDFILVDGNRLPR-WDYRSEPVVG 126

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD I  +I AASIIAKV RD  +    ++YP YGF  H GYPT  H + +   G + IHR
Sbjct: 127 GDGIEPAIGAASIIAKVQRDEELIALDEQYPGYGFAQHKGYPTRAHLEALASLGVTPIHR 186

Query: 199 LTFRPLRNL 207
            +F P+R L
Sbjct: 187 RSFAPVRRL 195


>gi|227543435|ref|ZP_03973484.1| ribonuclease H [Lactobacillus reuteri CF48-3A]
 gi|300910102|ref|ZP_07127562.1| ribonuclease H [Lactobacillus reuteri SD2112]
 gi|227186587|gb|EEI66658.1| ribonuclease H [Lactobacillus reuteri CF48-3A]
 gi|300892750|gb|EFK86110.1| ribonuclease H [Lactobacillus reuteri SD2112]
          Length = 256

 Score =  141 bits (355), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 81/194 (41%), Positives = 116/194 (59%), Gaps = 3/194 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F+ E    EK    VAG+DEVGRG LAGPVV   +IL+ +    G+ DSK+++  +RE L
Sbjct: 60  FKYEKYYWEKGYQYVAGMDEVGRGPLAGPVVTCVVILNADFDLIGVTDSKQLTRHERENL 119

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y +I   A+ +SI+      ID+ NI+ AT DA+  AV +L   P   ++D   +  D+P
Sbjct: 120 YLRIVDEAVEVSIAVNDAPVIDQMNIYAATQDAMIRAVNHLHHRPDHLIVDAVPLAIDIP 179

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +IKGD  S+S+AAASI+AK  RD LMR     YP YGF  ++GY T +H   +++
Sbjct: 180 QTT--LIKGDQKSISVAAASIVAKEYRDHLMRDYDYVYPGYGFAQNMGYGTKEHLAGLEK 237

Query: 191 KGPSCIHRLTFRPL 204
            G + IHR +F P+
Sbjct: 238 MGATPIHRRSFNPV 251


>gi|19704706|ref|NP_604268.1| ribonuclease HII [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|39932432|sp|Q8RDX3|RNH2_FUSNN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|19715020|gb|AAL95567.1| Ribonuclease HII [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 215

 Score =  141 bits (355), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 81/182 (44%), Positives = 113/182 (62%), Gaps = 6/182 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84
           V G+DE GRG LAGPVV AA+IL         INDSKK++ KKRE+LY+ I  +  +++ 
Sbjct: 21  VIGVDEAGRGPLAGPVVAAAVILKEYTEELDEINDSKKLTEKKREKLYDIIMKNFDVAVG 80

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPR----SALIDGRSIPEDLPCQAFAVIKGD 140
            ++ + IDK NI  A   A+  A+++L+ +      + L+DG    ++   +   ++KGD
Sbjct: 81  ISTVEEIDKLNILNADFLAMRRALKDLKSLKNEKEYTVLVDGNLKIKEYIGKQLPIVKGD 140

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHRL 199
           + SLSIAAASIIAKVTRDRLM+     YPDY F+ H GY T  H + IK+KG    +HR 
Sbjct: 141 AKSLSIAAASIIAKVTRDRLMKDLANIYPDYSFEKHKGYGTKTHIEAIKDKGAIEGVHRK 200

Query: 200 TF 201
            F
Sbjct: 201 VF 202


>gi|62185237|ref|YP_220022.1| ribonuclease HII [Chlamydophila abortus S26/3]
 gi|73917604|sp|Q5L5M0|RNH2_CHLAB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|62148304|emb|CAH64071.1| ribonuclease HII [Chlamydophila abortus S26/3]
          Length = 212

 Score =  141 bits (355), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 89/196 (45%), Positives = 119/196 (60%), Gaps = 4/196 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  V  +    +AGIDEVGRG LAGPVV  A IL    +  G+NDSKK++ K+R ++ +
Sbjct: 18  FEEEVFHEGFSLIAGIDEVGRGPLAGPVVAGACILPRGKVFAGVNDSKKLTPKERGKIRD 77

Query: 74  KIT--SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +   S     +   S + ID+ NI +AT +A+  A+ NL + P   L+DG  +P  +PC
Sbjct: 78  ILVNDSEVYYGLGVVSVERIDEINILEATKEAMAAAIANLPIHPDFLLVDGLHLPHKIPC 137

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   +IKGDS S SIAAASI+AK  RD LMR  H+ YPDYGFD H GY TA H   +K  
Sbjct: 138 KK--IIKGDSKSASIAAASILAKEYRDDLMRELHQLYPDYGFDKHKGYGTAAHLAALKAF 195

Query: 192 GPSCIHRLTFRPLRNL 207
           GP   HR +F P+R +
Sbjct: 196 GPCDCHRKSFAPVRQV 211


>gi|296327674|ref|ZP_06870216.1| ribonuclease H [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296155205|gb|EFG95980.1| ribonuclease H [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 213

 Score =  141 bits (355), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 81/182 (44%), Positives = 113/182 (62%), Gaps = 6/182 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84
           V G+DE GRG LAGPVV AA+IL         INDSKK++ KKRE+LY+ I  +  +++ 
Sbjct: 19  VIGVDEAGRGPLAGPVVAAAVILKEYTEELDEINDSKKLTEKKREKLYDIIMKNFDVAVG 78

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPR----SALIDGRSIPEDLPCQAFAVIKGD 140
            ++ + IDK NI  A   A+  A+++L+ +      + L+DG    ++   +   ++KGD
Sbjct: 79  ISTVEEIDKLNILNADFLAMRRALKDLKSLKNEKEYTVLVDGNLKIKEYIGKQLPIVKGD 138

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHRL 199
           + SLSIAAASIIAKVTRDRLM+     YPDY F+ H GY T  H + IK+KG    +HR 
Sbjct: 139 AKSLSIAAASIIAKVTRDRLMKDLANIYPDYSFEKHKGYGTKTHIEAIKDKGAIEGVHRK 198

Query: 200 TF 201
            F
Sbjct: 199 VF 200


>gi|293366790|ref|ZP_06613466.1| ribonuclease HII [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291319091|gb|EFE59461.1| ribonuclease HII [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 260

 Score =  141 bits (355), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 78/183 (42%), Positives = 115/183 (62%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG LAGPVV  A+IL+ N+   G++DSKK+S   R  L + +  +    +  
Sbjct: 78  ICGIDEVGRGPLAGPVVACAVILEKNHHYIGLDDSKKVSPNNRARLNQNLKENVYQYAYG 137

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID+ NI++AT  A+  A+  L V P   LID  ++  D+P    ++IKGD+ S+
Sbjct: 138 IASSVEIDELNIYRATQLAMLRAINQLDVTPTHLLIDAMTLDIDIP--QTSIIKGDAKSV 195

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASI+AK  RD+ MR   K++P+YGFD + GY T +H + I + G    HR +F P+
Sbjct: 196 SIAAASIMAKEYRDQYMRQLSKQFPEYGFDKNAGYGTKQHLKAIDQVGIINEHRQSFEPI 255

Query: 205 RNL 207
           +++
Sbjct: 256 KSM 258


>gi|220928167|ref|YP_002505076.1| ribonuclease HII [Clostridium cellulolyticum H10]
 gi|254807971|sp|B8I7T9|RNH2_CLOCE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|219998495|gb|ACL75096.1| ribonuclease HII/HIII [Clostridium cellulolyticum H10]
          Length = 255

 Score =  141 bits (355), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 122/192 (63%), Gaps = 6/192 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREE 70
           FE +A+    N   +AG+DE GRG LAGPVV AA++L PN +   GINDSKK+S  +RE+
Sbjct: 62  FERQAISEGFNY--IAGVDEAGRGPLAGPVVAAAVVL-PNGLTIEGINDSKKLSESQREK 118

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L+ +I   A+   IS    +YID+ NI  AT  A+  A+  L+      L+D   + +++
Sbjct: 119 LFSEIKEKALSYGISVIDEKYIDEVNILNATKRAMTEALSQLEPTADCILLDAVRL-DNI 177

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             +   +IKGDS+SLSIAAASI+AKVTRDRL+     KYP YGF +H GY T +H   IK
Sbjct: 178 STKQVPIIKGDSLSLSIAAASILAKVTRDRLLTEYDAKYPQYGFAAHKGYGTPQHISAIK 237

Query: 190 EKGPSCIHRLTF 201
           + G   IHRL+F
Sbjct: 238 KFGLCPIHRLSF 249


>gi|288553081|ref|YP_003425016.1| ribonuclease H [Bacillus pseudofirmus OF4]
 gi|288544241|gb|ADC48124.1| ribonuclease H [Bacillus pseudofirmus OF4]
          Length = 260

 Score =  141 bits (355), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 82/194 (42%), Positives = 114/194 (58%), Gaps = 8/194 (4%)

Query: 17  MVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           ++ E+  W      VAG+DEVGRG LAGPV  AA+IL  +    G+ DSKK+S +KRE  
Sbjct: 60  LMHEREAWQNGYNYVAGLDEVGRGPLAGPVTAAAVILPKDASLPGLTDSKKLSKEKREFF 119

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            E+I   A+  S+       ID+ NI++AT  A+  AV NL + P   L+D   +   LP
Sbjct: 120 VEEIKKQALAYSVVFVDADEIDRVNIYEATKLAMQRAVNNLDIQPDYLLLDAMKLANSLP 179

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            ++  +IKGD  SL+IAA+S++AKV RD  M    K YP YGF  HVGY T  H + +  
Sbjct: 180 QES--LIKGDQKSLTIAASSVLAKVARDEYMVELEKVYPGYGFAKHVGYGTEVHLKAMNA 237

Query: 191 KGPSCIHRLTFRPL 204
            G +  HR +F+P+
Sbjct: 238 LGITKEHRKSFKPV 251


>gi|313754409|pdb|3O3F|A Chain A, T. Maritima Rnase H2 D107n In Complex With Nucleic Acid
           Substrate And Magnesium Ions
 gi|313754415|pdb|3O3H|A Chain A, T. Maritima Rnase H2 D107n In Complex With Nucleic Acid
           Substrate And Manganese Ions
          Length = 222

 Score =  141 bits (355), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 114/188 (60%), Gaps = 4/188 (2%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
           +K    VAG+DE GRG LAGPVV AA++L+      GINDSK++S  KRE L ++I   A
Sbjct: 7   KKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKE--IEGINDSKQLSPAKRERLLDEIMEKA 64

Query: 80  IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
            + I  AS + ID +NI  AT  A+  A+ENL V P   L++G+ I   +P     ++KG
Sbjct: 65  AVGIGIASPEEIDLYNIFNATKLAMNRALENLSVKPSFVLVNGKGIELSVP--GTCLVKG 122

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D  S  I AASI+AKV RDRLM   H+ YP + F  H GY T +H   I++ G   IHRL
Sbjct: 123 DQKSKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKHKGYATKEHLNEIRKNGVLPIHRL 182

Query: 200 TFRPLRNL 207
           +F P+  L
Sbjct: 183 SFEPVLEL 190


>gi|326204815|ref|ZP_08194669.1| Ribonuclease H [Clostridium papyrosolvens DSM 2782]
 gi|325985027|gb|EGD45869.1| Ribonuclease H [Clostridium papyrosolvens DSM 2782]
          Length = 255

 Score =  141 bits (355), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 85/177 (48%), Positives = 115/177 (64%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DE GRG LAGPVV AA++L       G+NDSKK+S  +RE+L+++I   A+   IS
Sbjct: 74  IAGVDEAGRGPLAGPVVAAAVVLPKGLTIEGVNDSKKLSEAQREKLFDEIKEKALSYGIS 133

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
               +YID+ NI  AT  A+  A+  L  I    L+D  S+ +++  +   +IKGDS+SL
Sbjct: 134 VVDEKYIDEVNILNATKMAMTEALNRLDPIADCILLDAVSL-DNISTKQVPIIKGDSLSL 192

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SIAAASI+AKVTRDRL+     KYP YGF +H GY T +H   IK+ G   IHRL+F
Sbjct: 193 SIAAASILAKVTRDRLLMEYDAKYPQYGFAAHKGYGTPQHISAIKKFGLCPIHRLSF 249


>gi|325129110|gb|EGC51959.1| ribonuclease HII [Neisseria meningitidis N1568]
          Length = 194

 Score =  141 bits (355), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 113/184 (61%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83
            AG+DE GRG L G V  AA+IL +  ++P G+ DSKK+S KKR+ L E I + A+   +
Sbjct: 5   TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKNQAVAWHV 63

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           ++A+ + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  
Sbjct: 64  AAATPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHLNIPAEAVVKGDSKI 123

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           + I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P
Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183

Query: 204 LRNL 207
           +RNL
Sbjct: 184 VRNL 187


>gi|254556724|ref|YP_003063141.1| ribonuclease HII [Lactobacillus plantarum JDM1]
 gi|254045651|gb|ACT62444.1| ribonuclease HII [Lactobacillus plantarum JDM1]
          Length = 255

 Score =  141 bits (355), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 89/196 (45%), Positives = 121/196 (61%), Gaps = 8/196 (4%)

Query: 17  MVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           M  E++ W      VAGIDEVGRG LAGPVV AA++LD +     +NDSK+++ KKR  L
Sbjct: 58  MRLERDFWAHGGQYVAGIDEVGRGPLAGPVVTAAVVLDDHFDLLEVNDSKQLTAKKRAAL 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
             +I   A+ + I  A  Q ID+ NI++AT  A+  AV NL V P   L+D   +P  +P
Sbjct: 118 MPRILEEAVAVGIGVADAQQIDQLNIYEATRVAMAQAVRNLSVRPTRLLVDAMQVP--VP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            +   +IKGD+ S SI+AASI+AKV RD LM +  + YP Y F  ++GY TAKH   +  
Sbjct: 176 IEQTRLIKGDAKSASISAASIVAKVVRDHLMTMYDQVYPGYDFADNMGYGTAKHLAGLAS 235

Query: 191 KGPSCIHRLTFRPLRN 206
            G + IHR +F P+RN
Sbjct: 236 LGATPIHRQSFSPVRN 251


>gi|170017294|ref|YP_001728213.1| ribonuclease HII [Leuconostoc citreum KM20]
 gi|169804151|gb|ACA82769.1| Ribonuclease HII [Leuconostoc citreum KM20]
          Length = 266

 Score =  141 bits (355), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 86/200 (43%), Positives = 122/200 (61%), Gaps = 5/200 (2%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           +R +FE +  +  K +  VAG+DEVGRG LAGPVV AA+IL  +     + DSK+++  K
Sbjct: 63  QRFNFERDYWL--KGVELVAGVDEVGRGPLAGPVVAAAVILPHDFNIVDVIDSKQVAQHK 120

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           RE+LYE I   A+ I I S   + ID+ NI++A   A+  A+ NL   P++ LID   + 
Sbjct: 121 REQLYEIILDQAVSIGIGSVDAKTIDEINIYEAARQAMTEAINNLAPQPQALLIDAMQVY 180

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            D+  Q+   IKGD+ S SI AASI+AKV RD++M    K YP Y F  + GY T KH  
Sbjct: 181 LDITQQSL--IKGDARSNSIGAASIVAKVIRDKMMTDYDKVYPGYDFAQNAGYGTKKHLA 238

Query: 187 VIKEKGPSCIHRLTFRPLRN 206
            I + G + IHR +F+P+ +
Sbjct: 239 GIDKLGVTPIHRRSFQPVHD 258


>gi|28378510|ref|NP_785402.1| ribonuclease HII [Lactobacillus plantarum WCFS1]
 gi|38258518|sp|Q88W20|RNH2_LACPL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|28271346|emb|CAD64251.1| ribonuclease HII [Lactobacillus plantarum WCFS1]
          Length = 255

 Score =  141 bits (355), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 89/196 (45%), Positives = 121/196 (61%), Gaps = 8/196 (4%)

Query: 17  MVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           M  E++ W      VAGIDEVGRG LAGPVV AA++LD +     +NDSK+++ KKR  L
Sbjct: 58  MRLERDFWAHGGQYVAGIDEVGRGPLAGPVVTAAVVLDDHFDLLEVNDSKQLTAKKRAAL 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
             +I   A+ + I  A  Q ID+ NI++AT  A+  AV NL V P   L+D   +P  +P
Sbjct: 118 MPRILEEAVAVGIGVADAQQIDQLNIYEATRVAMAQAVRNLSVRPTRLLVDAMQVP--VP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            +   +IKGD+ S SI+AASI+AKV RD LM +  + YP Y F  ++GY TAKH   +  
Sbjct: 176 IEQTRLIKGDAKSASISAASIVAKVVRDHLMTMYDQVYPGYDFADNMGYGTAKHLAGLAS 235

Query: 191 KGPSCIHRLTFRPLRN 206
            G + IHR +F P+RN
Sbjct: 236 LGATPIHRQSFSPVRN 251


>gi|293605073|ref|ZP_06687465.1| ribonuclease HII [Achromobacter piechaudii ATCC 43553]
 gi|292816476|gb|EFF75565.1| ribonuclease HII [Achromobacter piechaudii ATCC 43553]
          Length = 202

 Score =  141 bits (355), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 81/185 (43%), Positives = 110/185 (59%), Gaps = 2/185 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
            AG+DE GRG LAG V  AA+IL+P     G+ DSK +    RE L  +I   A+   I+
Sbjct: 17  TAGVDEAGRGPLAGAVYAAAVILNPARPIDGLADSKVLKAATREALALEIQEHALAWCIA 76

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS Q ID  NI +AT+ A+  AV+ L V  + AL+DG   P+ L C    VIKGD++  
Sbjct: 77  SASVQEIDTLNILRATMLAMQRAVQGLSVPAQLALVDGNQAPK-LACTVQTVIKGDALVP 135

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AK  RD  +   H  YP Y F+ H GY TA H Q+++E GP   HR +F P+
Sbjct: 136 AISAASILAKTARDADLVRLHGLYPQYAFNQHKGYGTALHLQMLREHGPCAEHRRSFAPI 195

Query: 205 RNLSV 209
           +   +
Sbjct: 196 KAFGL 200


>gi|308388411|gb|ADO30731.1| ribonuclease HII [Neisseria meningitidis alpha710]
 gi|325131049|gb|EGC53774.1| ribonuclease HII [Neisseria meningitidis OX99.30304]
 gi|325137025|gb|EGC59621.1| ribonuclease HII [Neisseria meningitidis M0579]
 gi|325145388|gb|EGC67665.1| ribonuclease HII [Neisseria meningitidis M01-240013]
 gi|325202973|gb|ADY98427.1| ribonuclease HII [Neisseria meningitidis M01-240149]
 gi|325205284|gb|ADZ00737.1| ribonuclease HII [Neisseria meningitidis M04-240196]
 gi|325207229|gb|ADZ02681.1| ribonuclease HII [Neisseria meningitidis NZ-05/33]
          Length = 194

 Score =  140 bits (354), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 83/184 (45%), Positives = 113/184 (61%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83
            AG+DE GRG L G V  AA+IL +  ++P G+ DSKK+S KKR+ L E I + A+   +
Sbjct: 5   TAGVDEAGRGPLVGSVFAAAVILPEIFDLP-GLTDSKKLSEKKRDALAEMIKNQAVAWHV 63

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           ++AS + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  
Sbjct: 64  AAASPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHLNIPAEAVVKGDSKI 123

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           + I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P
Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183

Query: 204 LRNL 207
           +RNL
Sbjct: 184 VRNL 187


>gi|257089969|ref|ZP_05584330.1| ribonuclease HII [Enterococcus faecalis CH188]
 gi|256998781|gb|EEU85301.1| ribonuclease HII [Enterococcus faecalis CH188]
          Length = 255

 Score =  140 bits (354), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 88/183 (48%), Positives = 122/183 (66%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S KK+E LY +I   A+ I + 
Sbjct: 74  IAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKQETLYNQIQEQAVAIGLG 133

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI++AT  A+  A+++L   P   LID   +  D+P    ++IKGD+ S+
Sbjct: 134 IADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLIDAMQL--DVPQPQESLIKGDARSI 191

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASIIAKVTRDRLM    + YP YGF ++ GY T +H   +++ G + IHR TF P+
Sbjct: 192 SIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKYGVTPIHRRTFAPI 251

Query: 205 RNL 207
           +++
Sbjct: 252 KDM 254


>gi|289164797|ref|YP_003454935.1| ribonuclease HII [Legionella longbeachae NSW150]
 gi|288857970|emb|CBJ11830.1| putative ribonuclease HII [Legionella longbeachae NSW150]
          Length = 187

 Score =  140 bits (354), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 88/185 (47%), Positives = 113/185 (61%), Gaps = 8/185 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83
           +AG+DEVGRG LAG VV AA+IL     P  G+ DSKK+S KKRE L   I   A+  + 
Sbjct: 7   IAGVDEVGRGPLAGAVVTAAVILKS---PIEGLADSKKLSAKKRELLSLLIKEQALAYAY 63

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSI 142
             A    ID  NIH ATL A+  AVE L V P   L+DG  IP+ ++PC+A  +++GD +
Sbjct: 64  GRAEVDEIDALNIHHATLLAMQRAVEALPVKPDQVLVDGIHIPKLNIPCKA--IVQGDDL 121

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKV RD  M      YP YGF  H GYPT  H++ +K  GPS IHR +F 
Sbjct: 122 IPEISAASILAKVFRDAEMEALDAIYPGYGFAGHKGYPTVAHREALKRLGPSQIHRKSFA 181

Query: 203 PLRNL 207
            + +L
Sbjct: 182 LIGSL 186


>gi|254672745|emb|CBA06746.1| Ribonuclease HII [Neisseria meningitidis alpha275]
 gi|325203313|gb|ADY98766.1| ribonuclease HII [Neisseria meningitidis M01-240355]
          Length = 194

 Score =  140 bits (354), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 83/184 (45%), Positives = 113/184 (61%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83
            AG+DE GRG L G V  AA+IL +  ++P G+ DSKK+S KKR+ L E I + A+   +
Sbjct: 5   TAGVDEAGRGPLVGSVFAAAVILPEIFDLP-GLTDSKKLSEKKRDALAEMIKNQAVAWHV 63

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           ++AS + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  
Sbjct: 64  AAASPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHLNIPAEAVVKGDSKI 123

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           + I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P
Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183

Query: 204 LRNL 207
           +RNL
Sbjct: 184 VRNL 187


>gi|189043612|sp|B1MZ17|RNH2_LEUCK RecName: Full=Ribonuclease HII; Short=RNase HII
          Length = 260

 Score =  140 bits (354), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 85/200 (42%), Positives = 122/200 (61%), Gaps = 5/200 (2%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           +R +FE +  ++   +  VAG+DEVGRG LAGPVV AA+IL  +     + DSK+++  K
Sbjct: 57  QRFNFERDYWLKGVEL--VAGVDEVGRGPLAGPVVAAAVILPHDFNIVDVIDSKQVAQHK 114

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           RE+LYE I   A+ I I S   + ID+ NI++A   A+  A+ NL   P++ LID   + 
Sbjct: 115 REQLYEIILDQAVSIGIGSVDAKTIDEINIYEAARQAMTEAINNLAPQPQALLIDAMQVY 174

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            D+  Q+   IKGD+ S SI AASI+AKV RD++M    K YP Y F  + GY T KH  
Sbjct: 175 LDITQQSL--IKGDARSNSIGAASIVAKVIRDKMMTDYDKVYPGYDFAQNAGYGTKKHLA 232

Query: 187 VIKEKGPSCIHRLTFRPLRN 206
            I + G + IHR +F+P+ +
Sbjct: 233 GIDKLGVTPIHRRSFQPVHD 252


>gi|227486581|ref|ZP_03916897.1| ribonuclease H [Anaerococcus lactolyticus ATCC 51172]
 gi|227235399|gb|EEI85414.1| ribonuclease H [Anaerococcus lactolyticus ATCC 51172]
          Length = 207

 Score =  140 bits (354), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 80/177 (45%), Positives = 113/177 (63%), Gaps = 3/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AGIDEVGRG LAGPVV  A+I+  N+   G+ DSKK+S KK   L EKI + A+ +S  
Sbjct: 21  IAGIDEVGRGPLAGPVVTCAVIMKKNSHIEGVTDSKKLSRKKMLVLKEKILADALAVSYG 80

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A+ + ID+ NI +ATL A+  A+++L++ P   LID   I  DLP     ++KGD    
Sbjct: 81  FANSRKIDQINIRQATLQAMKDALDHLEIRPDIVLIDAERIDTDLP--QLNIVKGDLNEY 138

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +I+ ASI+AKV RD +M    K YP YGF+++ GY T  H Q +++ G + IHR +F
Sbjct: 139 AISCASILAKVRRDDIMINFSKIYPGYGFETNFGYGTKAHYQGLEQHGETPIHRQSF 195


>gi|146318650|ref|YP_001198362.1| ribonuclease HII [Streptococcus suis 05ZYH33]
 gi|146320856|ref|YP_001200567.1| ribonuclease HII [Streptococcus suis 98HAH33]
 gi|253751769|ref|YP_003024910.1| ribonuclease HII [Streptococcus suis SC84]
 gi|253753593|ref|YP_003026734.1| ribonuclease HII [Streptococcus suis P1/7]
 gi|253755526|ref|YP_003028666.1| ribonuclease HII [Streptococcus suis BM407]
 gi|166226663|sp|A4W1C8|RNH2_STRS2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166226665|sp|A4VV23|RNH2_STRSY RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|145689456|gb|ABP89962.1| Ribonuclease HII [Streptococcus suis 05ZYH33]
 gi|145691662|gb|ABP92167.1| Ribonuclease HII [Streptococcus suis 98HAH33]
 gi|251816058|emb|CAZ51678.1| ribonuclease HII [Streptococcus suis SC84]
 gi|251817990|emb|CAZ55772.1| ribonuclease HII [Streptococcus suis BM407]
 gi|251819839|emb|CAR45820.1| ribonuclease HII [Streptococcus suis P1/7]
 gi|292558337|gb|ADE31338.1| Ribonuclease H [Streptococcus suis GZ1]
 gi|319758118|gb|ADV70060.1| ribonuclease HII [Streptococcus suis JS14]
          Length = 257

 Score =  140 bits (354), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 85/201 (42%), Positives = 123/201 (61%), Gaps = 9/201 (4%)

Query: 14  LEAMV-REKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           LEAM+  EK+++      +AGIDEVGRG LAGPVV AA+IL        +NDSKKI   K
Sbjct: 54  LEAMLFYEKSLYENGVEFIAGIDEVGRGPLAGPVVAAAVILPKGCKIRYLNDSKKIPKSK 113

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
            E +Y+++   A+ + +       ID+ NI++AT  A+  A+  L   P   LID   + 
Sbjct: 114 HEAIYQEVMERAVAVGVGIKDAALIDEVNIYEATKLAMLEALGKLSQKPDHLLIDAMKL- 172

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            D P    ++IKGD+ SLSIAAASI+AKVTRD++M    K++  YGF  + GY T +H +
Sbjct: 173 -DTPIPQTSIIKGDANSLSIAAASIVAKVTRDKMMADYDKEFSGYGFAKNAGYGTTEHLE 231

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            + + G + IHR TF P++++
Sbjct: 232 GLNKLGITPIHRKTFEPIKSM 252


>gi|270156755|ref|ZP_06185412.1| ribonuclease HII [Legionella longbeachae D-4968]
 gi|269988780|gb|EEZ95034.1| ribonuclease HII [Legionella longbeachae D-4968]
          Length = 183

 Score =  140 bits (354), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 88/185 (47%), Positives = 113/185 (61%), Gaps = 8/185 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83
           +AG+DEVGRG LAG VV AA+IL     P  G+ DSKK+S KKRE L   I   A+  + 
Sbjct: 3   IAGVDEVGRGPLAGAVVTAAVILKS---PIEGLADSKKLSAKKRELLSLLIKEQALAYAY 59

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSI 142
             A    ID  NIH ATL A+  AVE L V P   L+DG  IP+ ++PC+A  +++GD +
Sbjct: 60  GRAEVDEIDALNIHHATLLAMQRAVEALPVKPDQVLVDGIHIPKLNIPCKA--IVQGDDL 117

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKV RD  M      YP YGF  H GYPT  H++ +K  GPS IHR +F 
Sbjct: 118 IPEISAASILAKVFRDAEMEALDAIYPGYGFAGHKGYPTVAHREALKRLGPSQIHRKSFA 177

Query: 203 PLRNL 207
            + +L
Sbjct: 178 LIGSL 182


>gi|225572008|ref|ZP_03780872.1| hypothetical protein RUMHYD_00302 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040541|gb|EEG50787.1| hypothetical protein RUMHYD_00302 [Blautia hydrogenotrophica DSM
           10507]
          Length = 251

 Score =  140 bits (354), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 87/177 (49%), Positives = 116/177 (65%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDE GRG LAGPVV  A+IL  N     +NDSKK+S  +REELY +I   A+ + + 
Sbjct: 71  ICGIDEAGRGPLAGPVVAGAVILQKNCGILYLNDSKKLSAARREELYRQIVEEAVAVGVG 130

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS Q ID+ NI +AT +A+  A++ L++ P+  L D  +IP  + C    +IKGD+ S 
Sbjct: 131 YASPQRIDEINILQATYEAMREAIQKLKIKPQILLNDAVTIP-GVSCPQVPIIKGDAKSA 189

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SIAAASI+AKVTRDRLM    +  P+YGF SH GY  A H + +K+ GPS IHR +F
Sbjct: 190 SIAAASIVAKVTRDRLMVEYDRLMPEYGFASHKGYGAAAHIEALKKYGPSPIHRKSF 246


>gi|225028010|ref|ZP_03717202.1| hypothetical protein EUBHAL_02279 [Eubacterium hallii DSM 3353]
 gi|224954724|gb|EEG35933.1| hypothetical protein EUBHAL_02279 [Eubacterium hallii DSM 3353]
          Length = 251

 Score =  140 bits (354), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 83/183 (45%), Positives = 114/183 (62%), Gaps = 4/183 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG LAGPVV  A++L   +    INDSKK+S KKREEL++ I   A+ + I 
Sbjct: 71  ICGIDEVGRGPLAGPVVAGAVVLPKGSRILYINDSKKLSAKKREELFDIIKEEAVSVGIG 130

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID+ NI +AT +A+  A+ NL V P   L D   IP  +  +   +IKGD+ S+
Sbjct: 131 MASPERIDEINILQATYEAMRQAIANLSVKPELLLNDAVMIP-GVDIKQVPIIKGDAKSI 189

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI AASI+AKV RD +M    K +P Y F S+ GY + +H + +   GP  IHR +F  L
Sbjct: 190 SIGAASIMAKVYRDHMMEEYDKVFPGYDFASNKGYGSKEHIEALHRLGPCPIHRCSF--L 247

Query: 205 RNL 207
           +N+
Sbjct: 248 KNI 250


>gi|315023047|gb|EFT36060.1| Ribonuclease HII [Riemerella anatipestifer RA-YM]
          Length = 194

 Score =  140 bits (354), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 78/176 (44%), Positives = 111/176 (63%), Gaps = 1/176 (0%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSA 86
           G DE GRG L GPVV AA+ILD N     INDSKK+S K R EL   I ++A+  +I+  
Sbjct: 15  GCDEAGRGCLCGPVVAAAVILDENFEQNLINDSKKLSFKTRNELDLYIKNNALDYAIAEL 74

Query: 87  SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSI 146
           S  +ID+HNI  A++ A++ A++ L + P   L+DG             +IKGDS  LSI
Sbjct: 75  SPAFIDEHNILNASIHAMHLALDKLAIRPELILVDGNRFKPYPFTPHECIIKGDSKVLSI 134

Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           AAASI+AK  RD +M   H++YP+YG++ + GY T +H++ + + GP+  HR +FR
Sbjct: 135 AAASILAKNYRDHIMIKLHEEYPEYGWNKNFGYATKQHREALNKLGPTIYHRKSFR 190


>gi|119510873|ref|ZP_01629997.1| Ribonuclease HII/HIII [Nodularia spumigena CCY9414]
 gi|119464482|gb|EAW45395.1| Ribonuclease HII/HIII [Nodularia spumigena CCY9414]
          Length = 244

 Score =  140 bits (354), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 88/186 (47%), Positives = 116/186 (62%), Gaps = 7/186 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI- 80
           VAGIDEVGRGAL GPVV AA+IL    +P      I DSKK+S  +R +L ++I   A  
Sbjct: 57  VAGIDEVGRGALFGPVVAAAVILPACALPKLMAAEIKDSKKLSSSRRTQLSQQICDLATD 116

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            +I  AS   ID+ NI +ATL A+  AV  L+V P+  L+DG    +DL      ++KGD
Sbjct: 117 WNIGFASSAEIDQINILQATLLAMRRAVLKLKVQPQLCLVDGNQPIKDLLIPQETIVKGD 176

Query: 141 SISLSIAAASIIAKVTRDRL-MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
             SL+IAAASI+AKV RD L MR+A  KYP Y    + GY + KH   +++ GPS +HR 
Sbjct: 177 ERSLTIAAASIVAKVWRDELVMRLAL-KYPLYNLKDNKGYGSQKHLVALQKYGPSRLHRK 235

Query: 200 TFRPLR 205
           +FRP +
Sbjct: 236 SFRPCQ 241


>gi|300767456|ref|ZP_07077368.1| ribonuclease HII [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308180667|ref|YP_003924795.1| ribonuclease HII [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|300495275|gb|EFK30431.1| ribonuclease HII [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308046158|gb|ADN98701.1| ribonuclease HII [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 255

 Score =  140 bits (354), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 89/196 (45%), Positives = 121/196 (61%), Gaps = 8/196 (4%)

Query: 17  MVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           M  E++ W      VAGIDEVGRG LAGPVV AA++LD +     +NDSK+++ KKR  L
Sbjct: 58  MRLERDFWAHGGQYVAGIDEVGRGPLAGPVVTAAVVLDDHFDLLEVNDSKQLTAKKRAAL 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
             +I   A+ + I  A  Q ID+ NI++AT  A+  AV NL V P   L+D   +P  +P
Sbjct: 118 MPRILEEAVAVGIGVADAQQIDQLNIYEATRVAMAQAVRNLSVRPTRLLVDAMQVP--VP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            +   +IKGD+ S SI+AASI+AKV RD LM +  + YP Y F  ++GY TAKH   +  
Sbjct: 176 IEQTRLIKGDAKSASISAASIVAKVVRDHLMTMYDQVYPGYDFADNMGYGTAKHLAGLAS 235

Query: 191 KGPSCIHRLTFRPLRN 206
            G + IHR +F P+RN
Sbjct: 236 LGATPIHRQSFSPVRN 251


>gi|187778966|ref|ZP_02995439.1| hypothetical protein CLOSPO_02561 [Clostridium sporogenes ATCC
           15579]
 gi|187772591|gb|EDU36393.1| hypothetical protein CLOSPO_02561 [Clostridium sporogenes ATCC
           15579]
          Length = 269

 Score =  140 bits (354), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 85/188 (45%), Positives = 117/188 (62%), Gaps = 6/188 (3%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEK 74
           R  N + +AG+DEVGRG LAGP+V AA++LD N    +    I DSKK+S KKREEL   
Sbjct: 78  RYGNSYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMHRILNIKDSKKLSEKKREELDII 137

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI  +I+   ++ ID+  I  +  + +  AVE L V P   L DG ++  +L  + 
Sbjct: 138 IREKAISYNIALVDNRTIDERGIAWSNNEVLKRAVEGLNVKPDLVLSDGYAVK-NLNIRN 196

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGDS S+SIA+ASIIAKV RD +M+   K+   YGF+ + GY T +H Q IK+ G 
Sbjct: 197 EFIIKGDSKSVSIASASIIAKVYRDNMMKEYSKELSMYGFNHNAGYGTEEHIQAIKKYGT 256

Query: 194 SCIHRLTF 201
           S IHR++F
Sbjct: 257 SKIHRMSF 264


>gi|313888218|ref|ZP_07821892.1| ribonuclease HII [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845908|gb|EFR33295.1| ribonuclease HII [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 205

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/203 (42%), Positives = 117/203 (57%), Gaps = 11/203 (5%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +  E    EK    + GIDEVGRG L G VV  A+I+       G+NDSKK+S KKRE L
Sbjct: 4   YNFEEEYYEKGYKNICGIDEVGRGCLFGDVVSCAVIMPRGKYIEGVNDSKKLSPKKREAL 63

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL------QVIPRSALIDGRS 124
           Y KI  SAI + I  A+   IDK NI  AT  ++ +A+ENL      ++     LID  +
Sbjct: 64  YLKILESAIAVGIGRANADIIDKVNIRMATHISMINALENLRDSENNKIEADCVLIDAET 123

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           I   +  +A  ++KGD    SIA ASI+AKV RD L +   ++YP YG + H GY T  H
Sbjct: 124 IETGIFQKA--IVKGDESCYSIACASIVAKVYRDNLCKKWAEEYPQYGLEKHKGYATKYH 181

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
           ++ +K  GPS +HR TF  L+N+
Sbjct: 182 REALKAYGPSDMHRKTF--LKNI 202


>gi|251782421|ref|YP_002996723.1| ribonuclease HII [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242391050|dbj|BAH81509.1| ribonuclease HII [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 256

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/197 (42%), Positives = 121/197 (61%), Gaps = 6/197 (3%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  + +K    +AGIDEVGRG LAGPVV A +IL       G+NDSKKI   K E +Y+ 
Sbjct: 62  EKALYKKGYQAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKAKHETIYQA 121

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLP 130
           +   A+ I I    +Q ID+ NI++AT  A+  A++ L+     P   LID  ++   +P
Sbjct: 122 VKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTLDIAIP 181

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            Q+  +IKGD+ SLSIAAASI+AKVTRD++M    + +P YGF  + GY T +H   ++ 
Sbjct: 182 QQS--IIKGDANSLSIAAASIVAKVTRDQMMANYERIFPGYGFAKNSGYGTKEHLDGLRT 239

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR +F P++++
Sbjct: 240 HGITPIHRKSFEPIKSM 256


>gi|254513857|ref|ZP_05125918.1| ribonuclease HII [gamma proteobacterium NOR5-3]
 gi|219676100|gb|EED32465.1| ribonuclease HII [gamma proteobacterium NOR5-3]
          Length = 204

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/181 (45%), Positives = 119/181 (65%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84
           + G+DEVGRG LAG VV AA++L+  +   G+ DSKK++ ++RE L E++   A  +++ 
Sbjct: 19  IVGVDEVGRGPLAGDVVAAAVVLNSADPIDGLADSKKLTARRREALSEQLHLRAHGVALG 78

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A+ + ID  NI +A+L A++ AV+ L + P   L+DGR +P      + AVIKGDS   
Sbjct: 79  LATPEEIDDLNILQASLLAMWRAVDALGMTPDLVLVDGRQLPR-WNHPSIAVIKGDSRVP 137

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            IAAASI+AKV RDR M   H ++P YGFD+H GYPTA H   ++E G S +HR +F P+
Sbjct: 138 QIAAASIVAKVARDRYMCEQHLRWPMYGFDAHKGYPTAAHLAALREHGVSPLHRRSFAPV 197

Query: 205 R 205
           R
Sbjct: 198 R 198


>gi|159896757|ref|YP_001543004.1| ribonuclease H [Herpetosiphon aurantiacus ATCC 23779]
 gi|238687141|sp|A9B6H3|RNH2_HERA2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|159889796|gb|ABX02876.1| Ribonuclease H [Herpetosiphon aurantiacus ATCC 23779]
          Length = 207

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/197 (43%), Positives = 120/197 (60%), Gaps = 14/197 (7%)

Query: 20  EKNMWP-----VAGIDEVGRGALAGPVVVAAI------ILDPNNIPFGINDSKKISHKKR 68
           E+ +W      VAG+DEVGRG  AGPVV AA+      + DP  +  GINDSK +S + R
Sbjct: 8   EQQLWRNGARIVAGVDEVGRGCWAGPVVAAAVSFPTHLLNDPVALA-GINDSKTLSAEAR 66

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           + + ++I   A  I +   S   ID   I +AT  A+ HAV +L  +P   +ID   +PE
Sbjct: 67  QAMAQQIRHLASGIGLGVVSAHLIDLFGIAEATKWAMMHAVLSLPSLPDGLVIDWVKLPE 126

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            LP    ++ KGD+IS+S+AAASIIAKV RD LM    ++ P YG+ +H GY TA+HQ+ 
Sbjct: 127 -LPLLQRSLPKGDAISISVAAASIIAKVYRDNLMHEYDQRDPRYGWAAHKGYGTAQHQRA 185

Query: 188 IKEKGPSCIHRLTFRPL 204
           +   GPS +HR +F+PL
Sbjct: 186 LAAHGPSGLHRRSFKPL 202


>gi|237738859|ref|ZP_04569340.1| ribonuclease HII [Fusobacterium sp. 2_1_31]
 gi|229423962|gb|EEO39009.1| ribonuclease HII [Fusobacterium sp. 2_1_31]
          Length = 217

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/183 (45%), Positives = 114/183 (62%), Gaps = 7/183 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84
           V G+DE GRG LAGPVV AA+IL   +     INDSKK++ KKRE+LY+ I ++  +++ 
Sbjct: 15  VIGVDEAGRGPLAGPVVAAAVILKQYSEELDEINDSKKLTEKKREKLYDIILNNFNVAVG 74

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPCQAFAVIKG 139
            AS + IDK NI  A   A+  A+++L+           L+DG    ++   +   V+KG
Sbjct: 75  IASVEEIDKLNILNADFLAMRRALKDLEKFHEVDKDYIVLVDGNLKIKEYEGKQLPVVKG 134

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHR 198
           D+ SLSIAAASIIAKVTRDR+M+    KYPDY F+ + GY T KH + IK KG    +HR
Sbjct: 135 DAKSLSIAAASIIAKVTRDRIMKDLGLKYPDYDFEKNKGYGTKKHVEAIKTKGVLKNVHR 194

Query: 199 LTF 201
             F
Sbjct: 195 KVF 197


>gi|148544008|ref|YP_001271378.1| ribonuclease HII [Lactobacillus reuteri DSM 20016]
 gi|184153402|ref|YP_001841743.1| ribonuclease HII [Lactobacillus reuteri JCM 1112]
 gi|227364921|ref|ZP_03848966.1| ribonuclease H [Lactobacillus reuteri MM2-3]
 gi|325682454|ref|ZP_08161971.1| ribonuclease HII [Lactobacillus reuteri MM4-1A]
 gi|166991068|sp|A5VJL7|RNH2_LACRD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|229564285|sp|B2G731|RNH2_LACRJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|148531042|gb|ABQ83041.1| RNase HII [Lactobacillus reuteri DSM 20016]
 gi|183224746|dbj|BAG25263.1| ribonuclease HII [Lactobacillus reuteri JCM 1112]
 gi|227070068|gb|EEI08446.1| ribonuclease H [Lactobacillus reuteri MM2-3]
 gi|324978293|gb|EGC15243.1| ribonuclease HII [Lactobacillus reuteri MM4-1A]
          Length = 256

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/194 (41%), Positives = 116/194 (59%), Gaps = 3/194 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F+ E    E     +AG+DEVGRG LAGPVV  A+IL+ +    G+ DSK+++  +RE L
Sbjct: 60  FKYEKYYWENGCQYIAGMDEVGRGPLAGPVVTCAVILNADFDLIGVTDSKQLTRHERENL 119

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y +I   A+ +SI+      ID+ NI+ AT DA+  AV +L   P   ++D   +  D+P
Sbjct: 120 YLRIVDEAVEVSIAVNDAPVIDQMNIYAATQDAMIRAVNHLHHRPDHLIVDAVPLAIDIP 179

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +IKGD  S+S+AAASI+AK  RD LMR     YP YGF  ++GY T +H   +++
Sbjct: 180 --QTTLIKGDQKSISVAAASIVAKEYRDHLMRDYDYVYPGYGFAQNMGYGTKEHLAGLEK 237

Query: 191 KGPSCIHRLTFRPL 204
            G + IHR +F P+
Sbjct: 238 MGATPIHRRSFNPV 251


>gi|158313006|ref|YP_001505514.1| ribonuclease HII [Frankia sp. EAN1pec]
 gi|238686844|sp|A8L6C6|RNH2_FRASN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|158108411|gb|ABW10608.1| Ribonuclease H [Frankia sp. EAN1pec]
          Length = 240

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/196 (41%), Positives = 117/196 (59%), Gaps = 10/196 (5%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN--DSKKISHKKRE 69
           F  E  +  + + PVAG+DE GRGA AGP+VVAA++LD   +       DSK ++ + RE
Sbjct: 15  FGYERALVRRGLGPVAGVDEAGRGACAGPMVVAAVVLDQRRLGLLRRLADSKLLTERVRE 74

Query: 70  ELYEKITSS----AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           E++  + ++    + I I +A    ID++ +H A +  +  AV  L V PR  L DG ++
Sbjct: 75  EVHADVLAAAAAVSTIVIPAAE---IDRNGVHVANIMGMRRAVAVLDVRPRYVLTDGFAV 131

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
              L  ++ AVIKGD +   IAAAS++AKVTRDR+MR  HK+YP+Y F  H GY TA H 
Sbjct: 132 A-GLGAESLAVIKGDLMVGCIAAASVVAKVTRDRIMRSLHKRYPEYDFAQHKGYVTAAHT 190

Query: 186 QVIKEKGPSCIHRLTF 201
             +   GP   HRL++
Sbjct: 191 AAMTRYGPCEQHRLSY 206


>gi|89898164|ref|YP_515274.1| ribonuclease HII [Chlamydophila felis Fe/C-56]
 gi|123483565|sp|Q255A9|RNH2_CHLFF RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|89331536|dbj|BAE81129.1| ribonuclease HII [Chlamydophila felis Fe/C-56]
          Length = 209

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/194 (46%), Positives = 118/194 (60%), Gaps = 4/194 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  V  +    +AG+DEVGRG LAGPVV  A IL    I  G+NDSKK+S K+R  + +
Sbjct: 16  FEEEVFSEGFSIIAGVDEVGRGPLAGPVVAGACILPRGKIFAGVNDSKKLSPKERGRMRD 75

Query: 74  KITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            + +   +   I   S + ID+ NI +AT +A+  A+ NL V P   L+DG  +P  +PC
Sbjct: 76  ILVNDPDVYYGIGVVSVERIDEINILEATKEAMAVAIANLPVHPDFLLVDGLHLPHKIPC 135

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   +IKGDS   SIAAASIIAK  RD LMR  H++YPDYGFD H GY TA H   +K  
Sbjct: 136 KK--IIKGDSKVASIAAASIIAKEYRDDLMRELHQRYPDYGFDKHKGYGTAAHLAALKAF 193

Query: 192 GPSCIHRLTFRPLR 205
           GP   HR +F P+R
Sbjct: 194 GPCDCHRKSFAPIR 207


>gi|330813681|ref|YP_004357920.1| ribonuclease HII [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486776|gb|AEA81181.1| ribonuclease HII [Candidatus Pelagibacter sp. IMCC9063]
          Length = 199

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/182 (42%), Positives = 114/182 (62%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           + G+DEVGRG LAGPVV AA+IL+P+     INDSKKIS KKR  ++ KI + +  +I  
Sbjct: 14  IIGVDEVGRGPLAGPVVAAAVILNPDICLKEINDSKKISKKKRNNVFFKIINHSKFAIGF 73

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           +S + I+K+NI +A+L A+  AV +L  +  + L+DG    +    +    +KGD    S
Sbjct: 74  SSVEEIEKYNILQASLTAMKRAVTSLGTLKSTILVDGIHSFDKKNKKILTFVKGDEQFPS 133

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           IAAASI+AKV RD  M I  KKY  YG++ + GY T++H   +K+ G + +HR  F P+ 
Sbjct: 134 IAAASILAKVLRDNYMCILAKKYKGYGWEKNSGYGTSEHMGAMKKFGLTPLHRKNFAPVH 193

Query: 206 NL 207
            +
Sbjct: 194 KM 195


>gi|227513336|ref|ZP_03943385.1| ribonuclease HII [Lactobacillus buchneri ATCC 11577]
 gi|227083209|gb|EEI18521.1| ribonuclease HII [Lactobacillus buchneri ATCC 11577]
          Length = 255

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/194 (42%), Positives = 117/194 (60%), Gaps = 8/194 (4%)

Query: 20  EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E++ W      VAG+DEVGRG LAGPVV  A IL  +     +NDSK+++ + R  L  +
Sbjct: 63  ERSFWHRGVNYVAGVDEVGRGPLAGPVVACATILPRDFDLIQVNDSKQLTPEIRARLAPQ 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI I +    ++ ID+ NI++AT  A+  AV NL   P   ++D   IP  +P   
Sbjct: 123 IKREAISIGLGLVDNKGIDRLNIYEATRVAMKQAVNNLTQQPDEIIVDAMQIP--VPIHQ 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGD+ S+S++AASI+AKV RD LM    ++YP+Y F  + GY TAKH   +K+ G 
Sbjct: 181 TRLIKGDAKSISVSAASIVAKVYRDNLMDQYAQQYPEYDFRHNAGYGTAKHLSALKKYGA 240

Query: 194 SCIHRLTFRPLRNL 207
           + IHR TF P++N 
Sbjct: 241 TPIHRKTFAPIKNF 254


>gi|223938652|ref|ZP_03630542.1| Ribonuclease H [bacterium Ellin514]
 gi|223892640|gb|EEF59111.1| Ribonuclease H [bacterium Ellin514]
          Length = 245

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 115/200 (57%), Gaps = 15/200 (7%)

Query: 20  EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-------NDSKKISHKK 67
           E+ +W      VAG+DE G G LAGPVV AA++   + +  G+       NDSK++   +
Sbjct: 14  ERELWQQGTTLVAGVDEAGCGPLAGPVVAAAVLFPCSWLEAGLFSKLRGLNDSKQLDEDQ 73

Query: 68  REELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           RE+ Y  I +   I  +I+    + ID+ NI +A    +  A++ L   P+  L+DG  I
Sbjct: 74  REKFYNIIVNHPEIRHAIAVIDVEMIDRINIRQAAWRGMNQALDQLNPKPQHVLVDGLKI 133

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
            + LP    A+++GD  S SIAAAS++AKVTRDRLM+   K+YP YGF  H GY T KH 
Sbjct: 134 -KWLPYAQTALVQGDGKSYSIAAASVLAKVTRDRLMQDYDKQYPGYGFAEHKGYGTPKHL 192

Query: 186 QVIKEKGPSCIHRLTFRPLR 205
             I  +GP  IHR +F P R
Sbjct: 193 AAINAQGPCLIHRKSFAPFR 212


>gi|307264856|ref|ZP_07546418.1| Ribonuclease H [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920114|gb|EFN50326.1| Ribonuclease H [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 242

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/190 (44%), Positives = 115/190 (60%), Gaps = 6/190 (3%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE---EL 71
           E  + + N+  +AG+DE GRG L GPVV A +IL        INDSKK+S KKRE   E+
Sbjct: 49  ENQLYQLNLNFIAGVDEAGRGPLVGPVVAACVILPKEVFIPEINDSKKLSEKKREVLSEV 108

Query: 72  YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +K+ +S  I I       IDK NI  AT  A+  A+  +Q      L+D  +IP+ +  
Sbjct: 109 IKKVATSYAIGIVDCEE--IDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQ-IEI 165

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              A++KGDS S+SIAAASI+AKV RD++M+  HK YP Y F+ + GY T +H + +K+ 
Sbjct: 166 NQKAIVKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKY 225

Query: 192 GPSCIHRLTF 201
           GP  IHR TF
Sbjct: 226 GPCPIHRKTF 235


>gi|261391728|emb|CAX49177.1| ribonuclease HII (RNase HII) [Neisseria meningitidis 8013]
          Length = 194

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/184 (45%), Positives = 112/184 (60%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKI-TSSAIISI 83
            AG+DE GRG L G V  AA+IL +  ++P G+ DSKK+S KKR+ L E I   +A   +
Sbjct: 5   TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDTLAEMIKNQAAAWHV 63

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           S+A+ + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  
Sbjct: 64  SAATPEEIASLNILHATMLAMKRAVDGLVVHPEKIFIDGNRIPEHLNIPAEAVVKGDSKI 123

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           + I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P
Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183

Query: 204 LRNL 207
           +RNL
Sbjct: 184 VRNL 187


>gi|17231824|ref|NP_488372.1| ribonuclease HII [Nostoc sp. PCC 7120]
 gi|39932442|sp|Q8YP68|RNH2_ANASP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|17133468|dbj|BAB76031.1| ribonuclease HII [Nostoc sp. PCC 7120]
          Length = 225

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/183 (45%), Positives = 115/183 (62%), Gaps = 5/183 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI- 80
           VAG+DEVGRGAL GPVV A++IL  +  P      I DSKK+SH +R +L ++I++ AI 
Sbjct: 37  VAGVDEVGRGALFGPVVAASVILPASAFPHLMTAEIKDSKKLSHSRRVQLAQQISTLAID 96

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             I  A+   ID+ NI +ATL A+  +V+ L++ P   LIDG    +DL      ++KGD
Sbjct: 97  WRIGYATTAEIDRINILQATLLAMKRSVKKLKLQPILCLIDGNQPVQDLLMLQQTIVKGD 156

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
             SL+IAAASI+AKV RD L++    KYP Y   S+ GY + KH   + + G S +HR +
Sbjct: 157 ERSLNIAAASIMAKVWRDDLIQRLATKYPMYDLKSNKGYGSKKHLLALAQHGASPLHRQS 216

Query: 201 FRP 203
           FRP
Sbjct: 217 FRP 219


>gi|254785187|ref|YP_003072615.1| ribonuclease HII [Teredinibacter turnerae T7901]
 gi|237686020|gb|ACR13284.1| ribonuclease HII [Teredinibacter turnerae T7901]
          Length = 191

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 115/183 (62%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84
           +AG+DEVGRG LAG VV AA++L  N+   G+ DSKK+S KKRE L+ +I   A    I+
Sbjct: 3   IAGVDEVGRGPLAGDVVAAAVVLGENHGIVGLADSKKLSEKKREALFVQIQQQAECFCIA 62

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID+ NI +A+L A+  AVE L++ P   L+DG  +P      A A++KGDS   
Sbjct: 63  RASVAEIDEINILQASLLAMKRAVEGLKIEPEHVLVDGNRLPR-WRYSAEAIVKGDSKVE 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKVTRDR M     +YP YGF  H GYPT  H   +   G + IHR ++ P+
Sbjct: 122 AISAASILAKVTRDREMVAFEAQYPGYGFAGHKGYPTKLHMDALARLGVTPIHRTSYAPV 181

Query: 205 RNL 207
           + L
Sbjct: 182 KAL 184


>gi|330685675|gb|EGG97316.1| ribonuclease HII [Staphylococcus epidermidis VCU121]
          Length = 256

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/186 (43%), Positives = 118/186 (63%), Gaps = 9/186 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR----EELYEKITSSAII 81
           + GIDEVGRG LAGPVV  A+IL+P +   G+NDSKK+S K R    ++L + +T  A  
Sbjct: 74  ICGIDEVGRGPLAGPVVACAVILNPGHRYLGLNDSKKVSAKNRAVLNQQLIDGVTDYAYG 133

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
             +SA    ID+ NI++AT  A+  A++ L+V P   LID  ++  ++     ++IKGD+
Sbjct: 134 IATSAE---IDEMNIYQATRLAMQRAIDQLKVQPTHLLIDAMTLDNEI--NQTSIIKGDA 188

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            S+SIAAASI+AK  RD  M+   K+YP Y F+++VGY T  H + I + G    HR TF
Sbjct: 189 KSVSIAAASIMAKEYRDNYMKDIAKQYPGYDFENNVGYGTKAHLEGIAQNGVISEHRKTF 248

Query: 202 RPLRNL 207
            P++++
Sbjct: 249 EPIKSI 254


>gi|255067201|ref|ZP_05319056.1| ribonuclease HII [Neisseria sicca ATCC 29256]
 gi|255048569|gb|EET44033.1| ribonuclease HII [Neisseria sicca ATCC 29256]
          Length = 197

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/188 (42%), Positives = 110/188 (58%), Gaps = 1/188 (0%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           KN + +AG+DE GRG L G V  AA+IL P+    G+ DSKK+S KKR+ L   I   A+
Sbjct: 2   KNSFLIAGVDEAGRGPLVGSVFAAAVILPPSYHLPGLTDSKKLSEKKRDTLAVLIKEQAL 61

Query: 81  I-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
              ++ A  Q I + NI  AT+ A+  AV  L + P    IDG  +P+ L   A AV+KG
Sbjct: 62  AWCVAQADPQEIFELNILHATMLAMSRAVHGLAIKPDKVFIDGNRVPKALGVDAEAVVKG 121

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DS  + I+AAS++AK  RD  M    ++YP YGFD H GY TA+H + ++  G    HR 
Sbjct: 122 DSKIMEISAASVLAKTARDAEMYALAERYPQYGFDKHKGYGTAQHLEALQRYGVLPEHRR 181

Query: 200 TFRPLRNL 207
            F P++ L
Sbjct: 182 DFAPVKAL 189


>gi|312143696|ref|YP_003995142.1| Ribonuclease H [Halanaerobium sp. 'sapolanicus']
 gi|311904347|gb|ADQ14788.1| Ribonuclease H [Halanaerobium sp. 'sapolanicus']
          Length = 265

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/192 (45%), Positives = 121/192 (63%), Gaps = 4/192 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
           L+  +       V GIDE GRG LAGPVV AA++LD     +G++DSKK+S +KRE+L E
Sbjct: 69  LQEKLESNGYQAVIGIDEAGRGPLAGPVVAAAVLLDSTKPIYGLDDSKKLSREKREKLLE 128

Query: 74  KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVEN----LQVIPRSALIDGRSIPEDL 129
           +I   A + I  AS + IDK+NI +AT  A+  AV+N    L+  P   L+DG ++  DL
Sbjct: 129 EIKKKAKVGIGQASSKEIDKYNIREATFAAMKRAVKNLLPQLEEKPDLLLVDGNTVIPDL 188

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                AVI GD+   SIAAASI AKV+RD+++    ++YP+Y F S+ GY TA+H   ++
Sbjct: 189 KIDQKAVIDGDAKINSIAAASIAAKVSRDQIIFEYAEEYPEYNFKSNKGYGTAEHIAALE 248

Query: 190 EKGPSCIHRLTF 201
           E G S IHR +F
Sbjct: 249 EHGSSPIHRKSF 260


>gi|157363760|ref|YP_001470527.1| ribonuclease HII [Thermotoga lettingae TMO]
 gi|189043671|sp|A8F5M9|RNH2_THELT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157314364|gb|ABV33463.1| Ribonuclease H [Thermotoga lettingae TMO]
          Length = 224

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 124/192 (64%), Gaps = 8/192 (4%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
           ++N   V G+DE GRG LAGPVV AA+IL+   +   + DSK+++ +KREEL+ +I +SA
Sbjct: 13  KQNFGTVIGVDEAGRGCLAGPVVAAAVILE---VQLDVFDSKQLTAQKREELFLQIMNSA 69

Query: 80  IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
            + I  A+ + ID +NI  AT  A+  A+ +L       L+DG+S+  +L  Q   ++KG
Sbjct: 70  EVGIGIATPEEIDLYNIFNATKIAMNRALASLNKKDAYVLVDGKSL--NLSQQGVCIVKG 127

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKK-YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           D  S SIAAASI+AKV RDR+M +AH + YP YGF  H GY T  H   I+E GP+  HR
Sbjct: 128 DEKSASIAAASIVAKVLRDRIM-VAHDRIYPCYGFSKHKGYGTVHHLNAIREFGPTVFHR 186

Query: 199 LTFRP-LRNLSV 209
           L+F P L NLSV
Sbjct: 187 LSFSPVLSNLSV 198


>gi|217076334|ref|YP_002334050.1| ribonuclease HII [Thermosipho africanus TCF52B]
 gi|226736825|sp|B7IF45|RNH2_THEAB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|217036187|gb|ACJ74709.1| ribonuclease HII [Thermosipho africanus TCF52B]
          Length = 220

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/184 (43%), Positives = 118/184 (64%), Gaps = 6/184 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           VAG+DE GRG L GPVV AA+IL  N    G++DSKK++ +KRE+L+ +I   +  +IS 
Sbjct: 3   VAGVDEAGRGPLFGPVVAAAVIL--NEEIDGLDDSKKLTSRKREKLFLEIIKKSYFAISI 60

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           A+   IDK NI  AT  A+  A+E L  ++    A +DG+++    P +   ++KGDS+ 
Sbjct: 61  ATADEIDKFNILHATEIAMDRALERLRKKINFDIAFVDGKNLNLKFPFKC--IVKGDSLV 118

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKV RDR++    KK+  Y  + H GYPT  H ++IKE G + +HRLT++P
Sbjct: 119 KEISAASILAKVVRDRIIVSYAKKFSSYMLEKHKGYPTQLHLKLIKEHGLTPLHRLTYKP 178

Query: 204 LRNL 207
           +  L
Sbjct: 179 VMEL 182


>gi|304436821|ref|ZP_07396787.1| ribonuclease H [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370193|gb|EFM23852.1| ribonuclease H [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 259

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/197 (45%), Positives = 120/197 (60%), Gaps = 2/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +  E    E+    VAG+DE GRG LAGPV VAA+IL    +   ++DSKK+S K REEL
Sbjct: 52  YAYERCAAERGHCIVAGVDEAGRGPLAGPVAVAAVILPQEYLLLRLDDSKKLSEKVREEL 111

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           YE+I S A+   +     + ID+ NI +AT   +Y AV  L   P+  LID  ++P  L 
Sbjct: 112 YERIVSDAVSYHVELIDAETIDRMNILEATRKGMYDAVAALLPTPQEVLIDAVALPH-LR 170

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             + +++KGD+ S SIAAASI+AKVTRDRLM    + YP YGF  H GY T +H   I+ 
Sbjct: 171 MASQSIVKGDAKSASIAAASILAKVTRDRLMLTYDEAYPVYGFAKHKGYGTQEHIDAIRN 230

Query: 191 KGPSCIHRLTFRPLRNL 207
            G   +HR TF P+R++
Sbjct: 231 YGICPLHRKTFEPIRSM 247


>gi|255069909|ref|XP_002507036.1| ribonuclease HII [Micromonas sp. RCC299]
 gi|226522311|gb|ACO68294.1| ribonuclease HII [Micromonas sp. RCC299]
          Length = 262

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/195 (43%), Positives = 120/195 (61%), Gaps = 7/195 (3%)

Query: 20  EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E+  W      V G+DE GRG LAGPVV AA +   + +   INDSK+++ ++REE+YE+
Sbjct: 59  ERRCWSAGKKIVCGVDEAGRGPLAGPVVAAACVFPEDLVIDAINDSKQMTEEEREEVYEE 118

Query: 75  ITSS--AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           + ++   I S+    H+ ID+ NI +AT+ A+  +VE L       LIDG  +P  L  +
Sbjct: 119 LMANDQVIKSVCVIDHERIDEINILEATMQAMAKSVEGLSTRADWVLIDGNRVPPPLIDR 178

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
           A A++KGD+ S+ IAAAS++AKVTRDR+M   H +YP YGFD H GY    H   I + G
Sbjct: 179 AEAIVKGDAKSVCIAAASVLAKVTRDRMMVKIHDEYPVYGFDQHKGYGVKAHMDAIHKHG 238

Query: 193 PSCIHRLTFRPLRNL 207
           P   HR TF P++ +
Sbjct: 239 PCPYHRKTFAPMKYM 253


>gi|313892616|ref|ZP_07826203.1| ribonuclease HII [Dialister microaerophilus UPII 345-E]
 gi|313119013|gb|EFR42218.1| ribonuclease HII [Dialister microaerophilus UPII 345-E]
          Length = 264

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/197 (44%), Positives = 130/197 (65%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           + +E+   ++ M  V GIDEVGRG LAGPV VAA+IL P+     +NDSKK+S +KRE +
Sbjct: 56  YAVESEFYKQGMQYVVGIDEVGRGPLAGPVTVAAVILKPHWFVENLNDSKKVSKEKREII 115

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            +KI   A+ ISI+  S + ID  NI++AT+ A+Y AV+ L++ P++ ++D   +   +P
Sbjct: 116 SKKIHEEALAISITDLSVEEIDTLNIYQATMLAMYQAVKKLEIKPQAVIVDAMPLHFQVP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
           C++   I GDS S S+AAASI+AKV RD +M    K YP Y F+ + GY T KH + I E
Sbjct: 176 CKSL--IHGDSKSASVAAASIVAKVHRDHIMDEYAKIYPGYDFEDNKGYGTKKHMEAIYE 233

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR ++ P++++
Sbjct: 234 LGITPIHRKSYEPVKSI 250


>gi|124515656|gb|EAY57165.1| ribonuclease HII [Leptospirillum rubarum]
 gi|206602288|gb|EDZ38770.1| Ribonuclease HII [Leptospirillum sp. Group II '5-way CG']
          Length = 228

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/210 (43%), Positives = 116/210 (55%), Gaps = 11/210 (5%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISH 65
           P  +LE    +K    VAG+DEVGRGALAGPVV AA+IL P  + F    GI DSK +S 
Sbjct: 4   PQADLEREFYKKGFLRVAGVDEVGRGALAGPVVAAAVIL-PMPLEFFENIGIRDSKLLSP 62

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
            KR  L +++ S     S+  ++   I+  NI +ATL A+  AVE L   P   L+DGR 
Sbjct: 63  SKRVALSDRLRSLLFSWSVGESTVSEINALNIRRATLLAMKRAVEGLPEFPDILLVDGRE 122

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           I  DL C+  +   GD   LSIAAASIIAKV RD +M      Y  YG   + GY TA+H
Sbjct: 123 IVPDLVCKQESFTGGDRRILSIAAASIIAKVYRDNMMSELDNAYAGYGLAENKGYGTAQH 182

Query: 185 QQVIKEKGPSCIHRLTF-----RPLRNLSV 209
           +  +  +G S IHR  F      P R  S+
Sbjct: 183 RDGLLLRGVSSIHRAVFCKTFLEPFRKKSI 212


>gi|308068634|ref|YP_003870239.1| ribonuclease HII [Paenibacillus polymyxa E681]
 gi|305857913|gb|ADM69701.1| Ribonuclease HII (RNase HII) [Paenibacillus polymyxa E681]
          Length = 215

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/195 (45%), Positives = 113/195 (57%), Gaps = 11/195 (5%)

Query: 20  EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           EK  W      +AGIDEVGRG L G VV AA+IL    +  G++DSKK++ KKRE  YE 
Sbjct: 15  EKKCWEQSCERIAGIDEVGRGCLFGDVVAAAVILPVGELLEGVDDSKKLTDKKREAYYEL 74

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI + +       ID  NI +A   A+  A+E L V P   L+D   +   +P   
Sbjct: 75  IMEKAIAVGVGYVDAHTIDDINIKQAARLAMKQAIEALHVSPDYLLVDAEKVDVSIP--Q 132

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK-KYPDYGFDSHVGYPTAKHQQVIKEKG 192
            ++IKGD+ S SIAAASIIAKVTRDRL +     KYP+YG   H GY T  H++ I   G
Sbjct: 133 LSIIKGDANSQSIAAASIIAKVTRDRLCKGEWDAKYPEYGIGIHKGYATKLHREQILALG 192

Query: 193 PSCIHRLTFRPLRNL 207
           P+ +HR +F  L NL
Sbjct: 193 PTEMHRRSF--LGNL 205


>gi|241760682|ref|ZP_04758774.1| ribonuclease HII [Neisseria flavescens SK114]
 gi|241318863|gb|EER55389.1| ribonuclease HII [Neisseria flavescens SK114]
          Length = 230

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/183 (45%), Positives = 111/183 (60%), Gaps = 3/183 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           AG+DE GRG L G V  AA+IL  + ++P G+ DSKK+S KKR+ L + I   A+  SI+
Sbjct: 40  AGVDEAGRGPLVGSVFAAAVILPEHFDLP-GLTDSKKLSEKKRDILAQLIKEQAVAWSIA 98

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    I + NI  AT+ A+  +VE L V P    IDG  +P+DL   A AV+KGDS  +
Sbjct: 99  FADPDEILQLNILHATMAAMKRSVEGLSVTPDKVWIDGNRVPKDLNVPAEAVVKGDSKII 158

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AAS++AK  RD  M    K+YP YGFD H GY TA+H   +K+ G    HR  F P+
Sbjct: 159 EISAASVLAKTARDAEMYELAKRYPQYGFDCHKGYGTAQHLAALKQYGVLPEHRRDFAPV 218

Query: 205 RNL 207
           + L
Sbjct: 219 KTL 221


>gi|332967913|gb|EGK07003.1| ribonuclease HII [Kingella kingae ATCC 23330]
          Length = 219

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/184 (42%), Positives = 110/184 (59%), Gaps = 1/184 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85
           AG+DE GRG L G V  AA++L  +    G+ DSKK+S KKR+ L  +I   AI  S+++
Sbjct: 30  AGVDEAGRGCLVGSVFAAAVMLPTDYALHGLTDSKKLSEKKRDALAVEIKQQAIAWSVAA 89

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           AS   I ++NI +ATL A+  A+  L   P    IDG  +P++L   A AV++GDS   +
Sbjct: 90  ASPAEIAQYNILQATLLAMTRAIAGLAKQPAFVWIDGNCVPKNLTMPAQAVVQGDSKIAT 149

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AK  RD  M   H++YP YGF  H GY TA H   +++ G    HR  F P++
Sbjct: 150 ISAASILAKTARDAEMYALHERYPQYGFAQHKGYGTAAHLAALQQFGALAEHRADFAPVK 209

Query: 206 NLSV 209
            + V
Sbjct: 210 AVLV 213


>gi|114328522|ref|YP_745679.1| ribonuclease HII [Granulibacter bethesdensis CGDNIH1]
 gi|122326524|sp|Q0BQZ6|RNH2_GRABC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|114316696|gb|ABI62756.1| ribonuclease HII [Granulibacter bethesdensis CGDNIH1]
          Length = 219

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/188 (45%), Positives = 112/188 (59%), Gaps = 7/188 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKKREELYEKITS--SA 79
           VAG+DEVGRG LAGPVV AA++L  +  P      I+DSKK+    R+  +  + +    
Sbjct: 24  VAGVDEVGRGPLAGPVVAAAVLLPASGFPAHLAGLIDDSKKLDAAARDRAFAALLAEPGI 83

Query: 80  IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
            I I +AS   I + NI  A++ A+  AVE L  IP  AL+DG   P  LPC A  V+ G
Sbjct: 84  TIGIGAASVTEIGRLNILHASMLAMRRAVERLPTIPDLALVDGNRAPA-LPCAARCVVGG 142

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D+  LSIAAASIIAKV RDR M    ++YP YG++ + GYPT  H+  + E GP+  HR 
Sbjct: 143 DAKCLSIAAASIIAKVVRDRAMARLARRYPVYGWERNAGYPTPAHRAGLTEFGPTPHHRT 202

Query: 200 TFRPLRNL 207
            F  +R L
Sbjct: 203 AFGLVRQL 210


>gi|56478865|ref|YP_160454.1| ribonuclease HII [Aromatoleum aromaticum EbN1]
 gi|81356536|sp|Q5NZG1|RNH2_AZOSE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|56314908|emb|CAI09553.1| Ribonuclease HII [Aromatoleum aromaticum EbN1]
          Length = 204

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/183 (44%), Positives = 108/183 (59%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           + G+DE GRG LAG VV AA+ILDP     G+NDSKK++ + RE L   I   AI  +++
Sbjct: 10  ICGVDEAGRGPLAGSVVAAAVILDPARPIDGLNDSKKLTERARERLAPLIRERAIAWAVA 69

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID+ NI  AT+ A+  AV  L  +P    +DG   P  L   A AV++GD+   
Sbjct: 70  EASVEEIDRLNILHATMLAMQRAVAALGCVPDLVRVDGNRCPP-LAVPAEAVVRGDATVP 128

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AK  RD  M     +YP YGF SH GYPT +H   ++  G    HR +F P+
Sbjct: 129 AIAAASILAKTVRDAQMIALDGEYPAYGFASHKGYPTPEHFIALRRHGVVACHRRSFAPV 188

Query: 205 RNL 207
           R L
Sbjct: 189 REL 191


>gi|15676119|ref|NP_273250.1| ribonuclease HII [Neisseria meningitidis MC58]
 gi|11387100|sp|Q9K1G1|RNH2_NEIMB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|7225412|gb|AAF40649.1| ribonuclease HII [Neisseria meningitidis MC58]
 gi|316985719|gb|EFV64665.1| ribonuclease HII family protein [Neisseria meningitidis H44/76]
 gi|325135118|gb|EGC57745.1| ribonuclease HII [Neisseria meningitidis M13399]
 gi|325199404|gb|ADY94859.1| ribonuclease HII [Neisseria meningitidis H44/76]
          Length = 194

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 113/184 (61%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            AG+DE GRG L G V  AA+IL +  ++P G+ DSKK+S KKR+ L E I + A+   +
Sbjct: 5   TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKNQAVEWHV 63

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           ++AS + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  
Sbjct: 64  AAASPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKI 123

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           + I+AAS++AK  RD  M    +++P YGFD H GY T +H + +++ G    HR  F P
Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALEKYGVLPEHRRDFAP 183

Query: 204 LRNL 207
           +RNL
Sbjct: 184 VRNL 187


>gi|297620937|ref|YP_003709074.1| Ribonuclease HII [Waddlia chondrophila WSU 86-1044]
 gi|297376238|gb|ADI38068.1| Ribonuclease HII [Waddlia chondrophila WSU 86-1044]
          Length = 254

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/199 (43%), Positives = 116/199 (58%), Gaps = 5/199 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           H+E EA  R       AGIDE GRG LAGPVV +A IL       G+NDSKK++  +R+ 
Sbjct: 58  HYENEA--RRMGYSHPAGIDEAGRGPLAGPVVASACILPAGYHLSGLNDSKKLTPLQRKR 115

Query: 71  LYEKITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            +E +T   +  I I  A+H+ ID  N+ +AT  A+  AV+ L+  P   LID   + E 
Sbjct: 116 FFEVLTQDPNVCIGIGIATHEEIDTVNVLEATKLAMCKAVDMLKPQPDFLLIDAVKLSEQ 175

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
            P     +IKGD    +IAAAS+IAK TRDR+M     K+P YGF  H GY T  H++ I
Sbjct: 176 -PIPFLNLIKGDCRVQAIAAASVIAKETRDRIMDEYDVKWPMYGFGRHKGYGTEAHREAI 234

Query: 189 KEKGPSCIHRLTFRPLRNL 207
           K  GP  IHR TF P++++
Sbjct: 235 KRHGPCPIHRKTFEPIKSM 253


>gi|159470503|ref|XP_001693396.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158282899|gb|EDP08650.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 197

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/193 (43%), Positives = 119/193 (61%), Gaps = 10/193 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELYEKITSSAI 80
           V G DE GRG LAGPVV A  +L   +     +P G+NDSK I+  +RE ++E +T+ + 
Sbjct: 1   VGGADEAGRGPLAGPVVAAVCVLPHQSDTSWQMPAGLNDSKAITEDEREAIFEALTTDSR 60

Query: 81  I--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA---LIDGRSIPEDLPCQAFA 135
           +  ++S   H+ ID+ NI +A L A+ ++  ++          L+DG  +P+DLPC A A
Sbjct: 61  VRWAVSIIDHETIDRINILQAALSAMRNSALDVHGQAPGLDYLLVDGNKLPKDLPCPARA 120

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           V+KGD+    IAAASIIAKVTRDRLM    K+YP YGF  H GY   +H   I   GPS 
Sbjct: 121 VVKGDATVACIAAASIIAKVTRDRLMLELDKQYPQYGFAQHKGYGVPQHMAAIHTHGPSA 180

Query: 196 IHRLTFRPLRNLS 208
           +HR +F P+++++
Sbjct: 181 VHRRSFEPVKSMT 193


>gi|167037678|ref|YP_001665256.1| ribonuclease HII [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320116093|ref|YP_004186252.1| Ribonuclease H [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856512|gb|ABY94920.1| Ribonuclease H [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929184|gb|ADV79869.1| Ribonuclease H [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 242

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/188 (44%), Positives = 114/188 (60%), Gaps = 2/188 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  + + N+  +AG+DE GRG L GPVV A +IL        INDSKK+S +KRE L E 
Sbjct: 49  ENQLYQLNLNFIAGVDEAGRGPLVGPVVAACVILPKEVFIPEINDSKKLSEEKREVLSEV 108

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI  +I     + IDK NI  AT  A+  A+  +Q      L+D  +IP+ +    
Sbjct: 109 IKKVAISYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQ-IEINQ 167

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            A++KGDS S+SIAAASI+AKV RD++M+  HK YP Y F+ + GY T +H + +K+ GP
Sbjct: 168 KAIVKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYGP 227

Query: 194 SCIHRLTF 201
             IHR TF
Sbjct: 228 CPIHRKTF 235


>gi|73541556|ref|YP_296076.1| ribonuclease HII [Ralstonia eutropha JMP134]
 gi|97189223|sp|Q470F1|RNH2_RALEJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|72118969|gb|AAZ61232.1| RNase HII [Ralstonia eutropha JMP134]
          Length = 218

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/186 (42%), Positives = 114/186 (61%), Gaps = 6/186 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAI-ISI 83
           + G+DE GRG LAGPV  AA++ DP   +  G+ DSK ++  KRE LY+KI   A+   I
Sbjct: 25  LCGVDEAGRGPLAGPVYAAAVVFDPAKPMLRGLADSKVLTASKREALYDKICERALGWHI 84

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLPCQAFAVIKGD 140
           + A+ + ID  NI  A++ A+  AV+ L    V P    +DG   P+ +P    A++KGD
Sbjct: 85  AFATVEEIDTLNILHASMLAMQRAVQGLAEKGVTPDLVQVDGNRCPQ-VPFPVEAIVKGD 143

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S+  +I+AASI+AKV RDR +   H+ YP YGFD+H GYPT +H   + + G +  HR +
Sbjct: 144 SLVKAISAASILAKVARDRELLTLHEVYPQYGFDAHSGYPTPQHLAALAQFGATPHHRRS 203

Query: 201 FRPLRN 206
           F P+R 
Sbjct: 204 FAPVRE 209


>gi|167040339|ref|YP_001663324.1| ribonuclease HII [Thermoanaerobacter sp. X514]
 gi|300914423|ref|ZP_07131739.1| Ribonuclease H [Thermoanaerobacter sp. X561]
 gi|307724341|ref|YP_003904092.1| Ribonuclease H [Thermoanaerobacter sp. X513]
 gi|166854579|gb|ABY92988.1| Ribonuclease H [Thermoanaerobacter sp. X514]
 gi|300889358|gb|EFK84504.1| Ribonuclease H [Thermoanaerobacter sp. X561]
 gi|307581402|gb|ADN54801.1| Ribonuclease H [Thermoanaerobacter sp. X513]
          Length = 242

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/188 (44%), Positives = 114/188 (60%), Gaps = 2/188 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  + + N+  +AG+DE GRG L GPVV A +IL        INDSKK+S +KRE L E 
Sbjct: 49  ENQLYQLNLNFIAGVDEAGRGPLVGPVVAACVILPKEVFIPEINDSKKLSEEKREVLSEV 108

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI  +I     + IDK NI  AT  A+  A+  +Q      L+D  +IP+ +    
Sbjct: 109 IKKVAISYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQ-IEINQ 167

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            A++KGDS S+SIAAASI+AKV RD++M+  HK YP Y F+ + GY T +H + +K+ GP
Sbjct: 168 KAIVKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYGP 227

Query: 194 SCIHRLTF 201
             IHR TF
Sbjct: 228 CPIHRKTF 235


>gi|325143205|gb|EGC65545.1| ribonuclease HII [Neisseria meningitidis 961-5945]
 gi|325197479|gb|ADY92935.1| ribonuclease HII [Neisseria meningitidis G2136]
          Length = 194

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 112/184 (60%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83
            AG+DE GRG L G V  AA+IL +  ++P G+ DSKK+S KKR+ L E I + A+   +
Sbjct: 5   TAGVDEAGRGPLVGSVFAAAVILPEIFDLP-GLTDSKKLSEKKRDALAEMIKNQAVAWHV 63

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           ++A  + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  
Sbjct: 64  AAAGPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKI 123

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           + I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P
Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183

Query: 204 LRNL 207
           +RNL
Sbjct: 184 VRNL 187


>gi|172040491|ref|YP_001800205.1| hypothetical protein cur_0811 [Corynebacterium urealyticum DSM
           7109]
 gi|171851795|emb|CAQ04771.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
          Length = 241

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/182 (43%), Positives = 110/182 (60%), Gaps = 10/182 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSA---- 79
           VAG+DE GRGA  GP+ +A+ IL  + +P   G+NDSKK++ K+RE L+  IT  A    
Sbjct: 41  VAGVDEAGRGACCGPITIASCILPDHGVPELAGLNDSKKLTPKRRERLFGAITEHAVAYE 100

Query: 80  IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
           I+ I +A    ID+  I  A ++ +Y  V  L V P   L D   +PE L C+   ++KG
Sbjct: 101 IVHIPAAE---IDQRGIQYANINGMYRVVAGLGVEPDVVLTDAVHLPE-LACEHAPLVKG 156

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D++S +I+AASI+AKV+RDRLM    +KYP YG   H GY TAKH   ++  G    HR 
Sbjct: 157 DALSPAISAASILAKVSRDRLMVEMAEKYPGYGLAGHKGYGTAKHMAAVRLHGACPEHRY 216

Query: 200 TF 201
           T+
Sbjct: 217 TY 218


>gi|319788756|ref|YP_004090071.1| Ribonuclease H [Ruminococcus albus 7]
 gi|315450623|gb|ADU24185.1| Ribonuclease H [Ruminococcus albus 7]
          Length = 204

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/190 (45%), Positives = 118/190 (62%), Gaps = 3/190 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E + + REK    V G DE GRG LAG V  AA++ D + +  GINDSKK++ KKRE+L+
Sbjct: 5   EFDDIYREK-YEVVCGCDEAGRGPLAGDVFAAAVVFDKDTVIEGINDSKKLTAKKREKLF 63

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           ++I   A   SI  A+   I+  NI    + A+  +VE +++ P   LIDG   P DL C
Sbjct: 64  DEIIEKAQDFSIQCATVAEIEDINILNCAMLAMKRSVEAMKIKPNVCLIDGNKTP-DLEC 122

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
            A AV+KGD+ S +IAAASI+AKV RDR M    +KYP++ F+ H GY T  H Q+I + 
Sbjct: 123 DAIAVVKGDAQSQAIAAASILAKVARDRYMLQMAEKYPEWQFEKHKGYGTKLHYQMIDKY 182

Query: 192 GPSCIHRLTF 201
           G S IHR +F
Sbjct: 183 GESPIHRPSF 192


>gi|222153077|ref|YP_002562254.1| ribonuclease HII [Streptococcus uberis 0140J]
 gi|254807991|sp|B9DS69|RNH2_STRU0 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|222113890|emb|CAR42059.1| ribonuclease HII [Streptococcus uberis 0140J]
          Length = 257

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/197 (41%), Positives = 120/197 (60%), Gaps = 6/197 (3%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E ++ ++    +AGIDEVGRG LAGPVV A +IL  +    G+NDSKKI   K   +++ 
Sbjct: 62  EKVLYQEGFSLIAGIDEVGRGPLAGPVVAACVILPIDCKIKGLNDSKKIPKSKHLSIFQA 121

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLP 130
           I   A+ I I    +  ID  NI++AT  A+  A++N++     P   LID  ++   +P
Sbjct: 122 IQERALGIGIGIVDNHVIDDINIYQATKVAMIEAIKNIKGDVTEPDYLLIDAMTLETPIP 181

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            Q+  +IKGD+ S+SIAAASI+AKVTRDRLM    K +P Y F  + GY T  H   +K+
Sbjct: 182 QQS--IIKGDANSMSIAAASIVAKVTRDRLMMDYEKAFPGYDFAKNAGYGTTSHLNGLKQ 239

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR +F P++++
Sbjct: 240 FGVTPIHRTSFEPIKSM 256


>gi|91775869|ref|YP_545625.1| RNase HII [Methylobacillus flagellatus KT]
 gi|123078856|sp|Q1H153|RNH2_METFK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|91709856|gb|ABE49784.1| RNase HII [Methylobacillus flagellatus KT]
          Length = 193

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/183 (42%), Positives = 112/183 (61%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           + G+DE GRG LAG V  AA+ILDP +   G+ DSK +S KKR+ L  +I   A+  +I+
Sbjct: 8   ICGVDEAGRGPLAGAVYAAAVILDPQHPIPGLADSKTLSEKKRDMLAIEIKQHALAWTIA 67

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           S S + ID+ NI +A+L A+  A++ L ++P   L+DG   P  +   A  ++KGDS   
Sbjct: 68  SCSAEEIDEINILQASLLAMKRAIDQLTIMPTQVLVDGLHCP-GIAIPAQGIVKGDSKVQ 126

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            IAAASI+AK  RD  M   H +YP Y F  H GYPTA H +++ E G   IHR ++ P+
Sbjct: 127 EIAAASILAKTARDHEMVEMHARYPQYDFAKHKGYPTAHHLRLLAEHGACEIHRRSYAPV 186

Query: 205 RNL 207
           + +
Sbjct: 187 KKV 189


>gi|126434540|ref|YP_001070231.1| ribonuclease HII [Mycobacterium sp. JLS]
 gi|166226627|sp|A3PXW3|RNH2_MYCSJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|126234340|gb|ABN97740.1| RNase HII [Mycobacterium sp. JLS]
          Length = 239

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 116/200 (58%), Gaps = 10/200 (5%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE+ +    + PVAG+DEVGRGA AGP+VVAA +L PN +     ++DSKK+  K+RE L
Sbjct: 20  LESALYRNGLGPVAGVDEVGRGACAGPLVVAACVLGPNRLESLAALDDSKKLGEKERERL 79

Query: 72  YEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           +  I   A    ++ I S     +D+  +H A ++ +  AV  L V P   L DG  +P 
Sbjct: 80  FPVIRRYALAYHVVFIPSGE---VDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP- 135

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            LP  +  V+ GD+ +  IAAAS++AKV+RDRLM    +++P YGF  H GY T  H   
Sbjct: 136 GLPMPSLPVVGGDAAAACIAAASVLAKVSRDRLMVAMEREHPGYGFAEHKGYSTPAHTAA 195

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           + E GP   HR +F  +R L
Sbjct: 196 LAELGPCAQHRYSFINVRRL 215


>gi|84502790|ref|ZP_01000903.1| ribonuclease HII [Oceanicola batsensis HTCC2597]
 gi|84388773|gb|EAQ01643.1| ribonuclease HII [Oceanicola batsensis HTCC2597]
          Length = 188

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/179 (46%), Positives = 117/179 (65%)

Query: 29  IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASH 88
           +DEVGRG LAGPV  AA+ILD   IP G+NDSKK++  +R  L E++ + A+IS++ AS 
Sbjct: 1   MDEVGRGPLAGPVTAAAVILDATCIPVGLNDSKKLTEPRRLALLEELRTCAMISVAHASV 60

Query: 89  QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAA 148
           + ID  NI +A+  A+  AV  L V P   LIDG  IP  L   A AVI GD+  LSIAA
Sbjct: 61  EEIDDLNILRASHLAMERAVAGLPVRPAHLLIDGNMIPRGLDIPATAVIGGDARCLSIAA 120

Query: 149 ASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           ASI AK+ RD +MR   +++  YG+D++VGYP+  H   ++  G +  HR +F+P+ N+
Sbjct: 121 ASIAAKIARDTIMRDLAQQFAGYGWDTNVGYPSKSHISALQSIGVTPHHRKSFKPVHNI 179


>gi|256750728|ref|ZP_05491613.1| Ribonuclease H [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750311|gb|EEU63330.1| Ribonuclease H [Thermoanaerobacter ethanolicus CCSD1]
          Length = 242

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/188 (44%), Positives = 113/188 (60%), Gaps = 2/188 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  + + N+  +AG+DE GRG L GPVV A +I   +     INDSKK+S +KRE L E 
Sbjct: 49  ENQLYQLNLNFIAGVDEAGRGPLVGPVVAACVIFPKDVFIPEINDSKKLSEEKREVLSEV 108

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI  S      + IDK NI  AT  A+  A+  +Q      L+D  +IP+ +    
Sbjct: 109 IKKVAISYSFGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQ-IEINQ 167

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            A++KGDS S+SIAAASI+AKV RD++M+  HK YP Y F+ + GY T +H + +K+ GP
Sbjct: 168 KAIVKGDSKSISIAAASILAKVERDKMMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYGP 227

Query: 194 SCIHRLTF 201
             IHR TF
Sbjct: 228 CPIHRKTF 235


>gi|257094431|ref|YP_003168072.1| ribonuclease HII [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257046955|gb|ACV36143.1| Ribonuclease H [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 198

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/187 (48%), Positives = 121/187 (64%), Gaps = 6/187 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84
           V GIDE GRG LAGPVV AA+ILDP+    G+NDSKK+S ++RE L E I   +   +++
Sbjct: 10  VCGIDEAGRGPLAGPVVAAAVILDPSRPIAGLNDSKKLSARRREVLAEAIRARALAWAVA 69

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQ----VIPRSALIDGRSIPEDLPCQAFAVIKGD 140
           +AS + ID+ NI +A+L A+  AV  L       P  AL+DG+  P+ LPC A A++ GD
Sbjct: 70  AASVEEIDRINILQASLLAMQRAVAALAGGHGAWPVHALVDGQHCPQ-LPCSAEAIVGGD 128

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
               SIAAASI+AK +RD  MR  H  YP YGFD H+GYPTA H + ++E G S  HR +
Sbjct: 129 GRIASIAAASILAKTSRDAGMRELHATYPQYGFDRHMGYPTAFHLRALEEHGVSPHHRRS 188

Query: 201 FRPLRNL 207
           + P+  L
Sbjct: 189 YAPVARL 195


>gi|326389492|ref|ZP_08211059.1| Ribonuclease H [Thermoanaerobacter ethanolicus JW 200]
 gi|325994497|gb|EGD52922.1| Ribonuclease H [Thermoanaerobacter ethanolicus JW 200]
          Length = 242

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/188 (44%), Positives = 114/188 (60%), Gaps = 2/188 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  + + N+  +AG+DE GRG L GP+V A +IL        INDSKK+S +KRE L E 
Sbjct: 49  ENQLYQLNLNFIAGVDEAGRGPLVGPIVAACVILPKEVFIPEINDSKKLSEEKREVLSEV 108

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI  +I     + IDK NI  AT  A+  A+  +Q      L+D  +IP+ +    
Sbjct: 109 IKKVAISYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQ-IEINQ 167

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            A++KGDS S+SIAAASI+AKV RD++M+  HK YP Y F+ + GY T +H + +K+ GP
Sbjct: 168 KAIVKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYGP 227

Query: 194 SCIHRLTF 201
             IHR TF
Sbjct: 228 CPIHRKTF 235


>gi|108798940|ref|YP_639137.1| ribonuclease HII [Mycobacterium sp. MCS]
 gi|119868055|ref|YP_938007.1| ribonuclease HII [Mycobacterium sp. KMS]
 gi|123070330|sp|Q1BAK3|RNH2_MYCSS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166226628|sp|A1UEF9|RNH2_MYCSK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|108769359|gb|ABG08081.1| RNase HII [Mycobacterium sp. MCS]
 gi|119694144|gb|ABL91217.1| RNase HII [Mycobacterium sp. KMS]
          Length = 239

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/197 (40%), Positives = 115/197 (58%), Gaps = 4/197 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE+ +    + PVAG+DEVGRGA AGP+VVAA +L PN +     ++DSKK+  K+RE L
Sbjct: 20  LESALYRNGLGPVAGVDEVGRGACAGPLVVAACVLGPNRLESLAALDDSKKLGEKERERL 79

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+   +     + +D+  +H A ++ +  AV  L V P   L DG  +P  LP
Sbjct: 80  FPVIRRYALAYHVVFIPSEEVDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP-GLP 138

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  V+ GD+ +  IAAAS++AKV+RDRLM    +++P YGF  H GY T  H   + E
Sbjct: 139 MPSLPVVGGDAAAACIAAASVLAKVSRDRLMVAMEREHPGYGFAEHKGYSTPAHTAALAE 198

Query: 191 KGPSCIHRLTFRPLRNL 207
            GP   HR +F  +R L
Sbjct: 199 LGPCAQHRYSFINVRRL 215


>gi|224541328|ref|ZP_03681867.1| hypothetical protein CATMIT_00488 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525765|gb|EEF94870.1| hypothetical protein CATMIT_00488 [Catenibacterium mitsuokai DSM
           15897]
          Length = 211

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/201 (40%), Positives = 124/201 (61%), Gaps = 8/201 (3%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           ER  +E EA  R      + G+DE GRG +AGP+VV  +I   +     INDSKK++ KK
Sbjct: 5   ERLKYENEA--RAAGYSRILGVDEAGRGPMAGPLVVGGVIFPEDFYDERINDSKKLTEKK 62

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           RE LY+ I  +A+   I   S + +D  N+++A+   +   VE+L+  P   L D   + 
Sbjct: 63  REALYDLIIENALAYQIEVLSVEEVDTLNVYEASRTGMKRIVESLE--PDFTLSDAMPLG 120

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            D+P    ++IKGD+ S+SI AASI+AKVTRDR+M+   K+YP+YGF+ H GY T  H++
Sbjct: 121 -DIPH--LSIIKGDAKSISIGAASILAKVTRDRIMKEYGKQYPEYGFEKHKGYVTKAHKE 177

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            +++ G + IHR +F P++ +
Sbjct: 178 ALEKYGVTPIHRRSFAPVQKV 198


>gi|217974046|ref|YP_002358797.1| ribonuclease HII [Shewanella baltica OS223]
 gi|254807987|sp|B8E7Q2|RNH2_SHEB2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|217499181|gb|ACK47374.1| Ribonuclease H [Shewanella baltica OS223]
          Length = 210

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 114/188 (60%), Gaps = 6/188 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S K+RE L+++I   A+   + 
Sbjct: 20  IAGVDEVGRGPLVGDVVTAAVILDPNKPISGLNDSKKLSEKRREALFDEICDKALCYQVG 79

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-----EDLPCQAFAVIKG 139
            AS   ID+ NI  AT+ A+  AV  L + P   L+DG   P           + ++IKG
Sbjct: 80  RASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRSPIFVAHNGAGLTSHSIIKG 139

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D +  SI+AASIIAKVTRDR M +    YP YGF  H GYPT  H + I E G    +R 
Sbjct: 140 DGLIASISAASIIAKVTRDREMDVLDAAYPQYGFAKHRGYPTKAHFEAIAEHGVFDQYRK 199

Query: 200 TFRPLRNL 207
           +F+P++ L
Sbjct: 200 SFKPVKAL 207


>gi|296136565|ref|YP_003643807.1| Ribonuclease H [Thiomonas intermedia K12]
 gi|295796687|gb|ADG31477.1| Ribonuclease H [Thiomonas intermedia K12]
          Length = 214

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/184 (45%), Positives = 118/184 (64%), Gaps = 4/184 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG DEVGRG  AGPVV AA++LDP +   G+ DSK +S ++REEL  +I + ++  SI+
Sbjct: 18  IAGCDEVGRGPWAGPVVAAAVVLDPAHPIAGLADSKLLSARRREELDAQIRAHSLGWSIA 77

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            +S + ID+ NI +ATL A+  AV  L       L+DG   P+  +PC+A  ++ GD+  
Sbjct: 78  ESSVEEIDQRNILQATLLAMQRAVAALPCKIDLLLVDGNQTPQVAMPCRA--IVGGDAAE 135

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASIIAKV RDRLM    ++YP YGF+ H GY TA H+  +   GP   HR +F P
Sbjct: 136 PAISAASIIAKVYRDRLMAELAQRYPGYGFERHSGYGTAAHRAALLTLGPCAEHRRSFAP 195

Query: 204 LRNL 207
           +R L
Sbjct: 196 IRRL 199


>gi|167949995|ref|ZP_02537069.1| ribonuclease HII [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 162

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/157 (50%), Positives = 103/157 (65%), Gaps = 2/157 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84
           VAG+DEVGRG LAGPVV AA+ILDP     G+ DSKK+S K+RE+L E+I T S   ++ 
Sbjct: 7   VAGVDEVGRGPLAGPVVAAAVILDPAQPIEGLADSKKLSEKRREQLAEQIRTQSLAWALG 66

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI +A+L A+  AVE L + P+  L+DG+  P+ L C   A+I GDS   
Sbjct: 67  RAEVEEIDQINILQASLLAMRRAVEALALTPQRVLVDGKHAPQ-LACPVEAIIGGDSSVE 125

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           +I+AASIIA V RDR M    + +P YG   H GYPT
Sbjct: 126 AISAASIIANVARDREMVELDQHHPGYGLARHKGYPT 162


>gi|90415807|ref|ZP_01223740.1| Ribonuclease HII (RNase HII) [marine gamma proteobacterium
           HTCC2207]
 gi|90332181|gb|EAS47378.1| Ribonuclease HII (RNase HII) [marine gamma proteobacterium
           HTCC2207]
          Length = 204

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/181 (45%), Positives = 110/181 (60%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG LAG VV AA+IL  N+   G+ DSK +S ++RE LY  ITS A+  S++
Sbjct: 13  LAGVDEVGRGPLAGDVVTAAVILPANHGIEGLADSKALSSRQRENLYADITSRALCWSVA 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S   ID+ NI +ATL A+  AV  L   P    +DG  +P+    +  AV+KGD    
Sbjct: 73  RCSVAEIDRFNILQATLMAMRRAVMGLSQQPDYVAVDGNRLPQ-WEYRGEAVVKGDGRVE 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASIIAKV RD  M+     YP YGF ++ GY T +H + +   G + IHR TF P+
Sbjct: 132 CISAASIIAKVVRDAEMKAFDITYPGYGFAANKGYGTPQHLEALSRIGATPIHRRTFAPV 191

Query: 205 R 205
           R
Sbjct: 192 R 192


>gi|78485616|ref|YP_391541.1| ribonuclease H [Thiomicrospira crunogena XCL-2]
 gi|97189437|sp|Q31G56|RNH2_THICR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|78363902|gb|ABB41867.1| RNase HII [Thiomicrospira crunogena XCL-2]
          Length = 207

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/183 (43%), Positives = 114/183 (62%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + G+DEVGRG L G VV AA+IL P      + DSKK+S  KRE +  +I   AI   I+
Sbjct: 20  IVGVDEVGRGPLVGDVVAAAVIL-PKGCELLLKDSKKLSESKRELIAHQIQQEAIDFCIA 78

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           +AS   ID  NI  AT+ A+  AVE L    +  L+DG   P ++P +  A++KGD    
Sbjct: 79  TASPDEIDSLNILHATMLAMKRAVEGLNNPIKKVLVDGNRCP-NVPYECEAIVKGDGKVP 137

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M++ H+ YP+YGFD+H GYPT  H + + + G    +R +F+P+
Sbjct: 138 VISAASILAKVHRDQQMQVLHEAYPEYGFDAHKGYPTKLHLEKLSQHGLIPGYRRSFKPV 197

Query: 205 RNL 207
           +N+
Sbjct: 198 KNI 200


>gi|29840412|ref|NP_829518.1| ribonuclease HII [Chlamydophila caviae GPIC]
 gi|33301616|sp|Q822M7|RNH2_CHLCV RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|29834761|gb|AAP05396.1| ribonuclease HII [Chlamydophila caviae GPIC]
          Length = 212

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/196 (45%), Positives = 121/196 (61%), Gaps = 4/196 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  V  +    +AG+DEVGRG LAGPVV  A IL    I  G+NDSKK++ K+R ++ +
Sbjct: 18  FEEEVYGEGFSIIAGVDEVGRGPLAGPVVAGACILPRGKIFAGVNDSKKLTPKERGKIRD 77

Query: 74  KITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            + +   +   I   S + ID+ NI +AT +A+  A+ NL V P   LIDG  +P  +PC
Sbjct: 78  ILLNDPDVCYGIGVVSVERIDEINILEATKEAMAKAIANLSVHPDFLLIDGLHLPHKIPC 137

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   +IKGDS S SIAAASIIAK  RD LMR  H++YP+YGFD H GY TA H   ++  
Sbjct: 138 KK--IIKGDSKSASIAAASIIAKEYRDDLMRELHQRYPNYGFDKHKGYGTAAHLAALRAF 195

Query: 192 GPSCIHRLTFRPLRNL 207
           GP   HR +F P+R +
Sbjct: 196 GPCDCHRKSFAPIRQV 211


>gi|225621120|ref|YP_002722378.1| ribonuclease HII [Brachyspira hyodysenteriae WA1]
 gi|225215940|gb|ACN84674.1| ribonuclease HII [Brachyspira hyodysenteriae WA1]
          Length = 226

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/191 (43%), Positives = 112/191 (58%), Gaps = 13/191 (6%)

Query: 26  VAGIDEVGRGALAGPVVVAAII----------LDPNNIPFGINDSKKISHKKREELYEKI 75
           + GIDEVGRG L GPV VAA+I          L   NI   I+DSKKIS KKREELY+KI
Sbjct: 26  ICGIDEVGRGCLFGPVTVAAVIMPLELYNENELKKENIVEEIDDSKKISAKKREELYDKI 85

Query: 76  TSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
              A+  SI S   + ID+ NI+ A   A+ +AV NL + P   LID  ++  D+  +  
Sbjct: 86  IDKALCYSIYSVDSKTIDEINIYNAVKLAMVNAVNNLNIKPDILLID--AVKLDINIKQC 143

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
           ++ KGD+ S SI  ASI+AKV RDR+M      Y  Y    + GY T +H + I+  GPS
Sbjct: 144 SITKGDAKSYSIGCASIVAKVYRDRMMNELPDFYQKYKVSKNKGYGTKEHMKTIEMYGPS 203

Query: 195 CIHRLTFRPLR 205
            +HR +F P++
Sbjct: 204 DMHRYSFEPIK 214


>gi|83754963|pdb|2ETJ|A Chain A, Crystal Structure Of Ribonuclease Hii (Ec 3.1.26.4) (Rnase
           Hii) (Tm0915) From Thermotoga Maritima At 1.74 A
           Resolution
          Length = 250

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 112/188 (59%), Gaps = 4/188 (2%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
           +K    VAG+DE GRG LAGPVV AA++L+      GINDSK++S  KRE L ++I   A
Sbjct: 20  KKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKE--IEGINDSKQLSPAKRERLLDEIXEKA 77

Query: 80  IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
            + I  AS + ID +NI  AT  A   A+ENL V P   L+DG+ I   +P     ++KG
Sbjct: 78  AVGIGIASPEEIDLYNIFNATKLAXNRALENLSVKPSFVLVDGKGIELSVP--GTCLVKG 135

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D  S  I AASI+AKV RDRL    H+ YP + F  H GY T +H   I++ G   IHRL
Sbjct: 136 DQKSKLIGAASIVAKVFRDRLXSEFHRXYPQFSFHKHKGYATKEHLNEIRKNGVLPIHRL 195

Query: 200 TFRPLRNL 207
           +F P+  L
Sbjct: 196 SFEPVLEL 203


>gi|91762761|ref|ZP_01264726.1| Ribonuclease HII (RNase HII) [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718563|gb|EAS85213.1| Ribonuclease HII  (RNase HII) [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 186

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/185 (43%), Positives = 117/185 (63%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82
           M  +AG+DEVGRG+L GPV  AAIIL+ +     + DSK ++  KREEL + I  ++I +
Sbjct: 1   MKILAGVDEVGRGSLIGPVYAAAIILNNSIDKKLLKDSKTLTKDKREELEKYIKKNSIWA 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I  AS + I+K NI +A+L A+  A+  L+  P   LIDG  +P+    +   VIKGD  
Sbjct: 61  IGQASTKEIEKINILQASLLAMKRAILKLKTKPSLVLIDGNKLPDLKNYKLKYVIKGDQK 120

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             SI+AASI+AKV+RD+ +    KK+ +YG+D++ GY T +H   IK+ G +  HR TF 
Sbjct: 121 IPSISAASIVAKVSRDKFITKLSKKFNNYGWDTNSGYGTKEHLNAIKKFGITKYHRKTFS 180

Query: 203 PLRNL 207
           P+ +L
Sbjct: 181 PICDL 185


>gi|219854648|ref|YP_002471770.1| hypothetical protein CKR_1305 [Clostridium kluyveri NBRC 12016]
 gi|219568372|dbj|BAH06356.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 290

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/192 (45%), Positives = 117/192 (60%), Gaps = 9/192 (4%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-----FGINDSKKISHKKREELYEKIT 76
           N   VAG DEVGRG LAGP+V AA+IL+ N +       G+ DSKK++ K R EL + I 
Sbjct: 101 NYIYVAGTDEVGRGPLAGPIVAAAVILNLNYVEDKKLILGVKDSKKLTQKARYELSQTIK 160

Query: 77  SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135
             A+  SI+  +++ IDK  I     + +  AV  L++     L DG ++ ++LP +   
Sbjct: 161 EKALSYSIAVINNKEIDKRGISWCNNEVLRKAVLGLKLPVELVLSDGYAV-KNLPVRNEF 219

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           VIKGDS S+SIA+ASIIAKV RD LMR   K Y +Y F S+ GY T +H   IK+ G   
Sbjct: 220 VIKGDSKSVSIASASIIAKVYRDELMREYSKVYTEYNFQSNSGYGTKEHIGAIKKYGTCK 279

Query: 196 IHRLTFRPLRNL 207
           IHRL+F  LRN+
Sbjct: 280 IHRLSF--LRNI 289


>gi|288922428|ref|ZP_06416616.1| Ribonuclease H [Frankia sp. EUN1f]
 gi|288346231|gb|EFC80572.1| Ribonuclease H [Frankia sp. EUN1f]
          Length = 240

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/193 (41%), Positives = 110/193 (56%), Gaps = 4/193 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKRE 69
           F  E  +    + PVAG+DE GRGA AGP+VVAA+IL P        +NDSK ++ + RE
Sbjct: 15  FGYERALTRCGLGPVAGVDEAGRGACAGPLVVAAVILRPGRTRRLARLNDSKLLTERVRE 74

Query: 70  ELYEKITSSAIISISSASHQY-IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           E+Y  + +SA    +       ID+  +H A +  +  AV  L V P   L DG ++ E 
Sbjct: 75  EVYADVQASAAAVATVVVPAADIDRIGVHVANIMGMRRAVARLGVSPGYVLTDGFAV-EG 133

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
              ++ AVIKGD     IAAAS++AKVTRDR+MR  H++Y +Y F  H GY TA H   +
Sbjct: 134 FGVESLAVIKGDRAVGCIAAASVVAKVTRDRIMRCLHEQYAEYDFAQHKGYVTAAHTAAL 193

Query: 189 KEKGPSCIHRLTF 201
              GP   HRL++
Sbjct: 194 ARYGPCAEHRLSY 206


>gi|82701801|ref|YP_411367.1| ribonuclease H [Nitrosospira multiformis ATCC 25196]
 gi|97189026|sp|Q2YB96|RNH2_NITMU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|82409866|gb|ABB73975.1| RNase HII [Nitrosospira multiformis ATCC 25196]
          Length = 199

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/188 (42%), Positives = 111/188 (59%), Gaps = 3/188 (1%)

Query: 22  NMWP-VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           N +P V G+DE GRG LAGPV  A +ILDP +   G+ DSK ++  KR  L   I + +I
Sbjct: 4   NEYPWVCGVDEAGRGPLAGPVFAACVILDPASPIDGLADSKTLTEGKRNSLTLAIKAYSI 63

Query: 81  I-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             +I  AS + ID+ NI +A+L A+  A+  L V P   L+DG   P  L      +++G
Sbjct: 64  AWAIGFASVREIDRLNILQASLLAMKRAIGKLPVTPARVLVDGNHSPR-LKFPVTTIVRG 122

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DS+   I+AASI+AK  RD  M   H+++P YGFD H GY T +H   +K  G S +HR 
Sbjct: 123 DSLVPEISAASILAKTARDAEMMALHRRFPRYGFDQHKGYSTEQHLAALKIHGVSIVHRR 182

Query: 200 TFRPLRNL 207
           +F P+R L
Sbjct: 183 SFAPVREL 190


>gi|153954034|ref|YP_001394799.1| ribonuclease HII [Clostridium kluyveri DSM 555]
 gi|189043584|sp|A5N820|RNH2_CLOK5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|146346915|gb|EDK33451.1| Hypothetical protein CKL_1409 [Clostridium kluyveri DSM 555]
          Length = 288

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/192 (45%), Positives = 117/192 (60%), Gaps = 9/192 (4%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-----FGINDSKKISHKKREELYEKIT 76
           N   VAG DEVGRG LAGP+V AA+IL+ N +       G+ DSKK++ K R EL + I 
Sbjct: 99  NYIYVAGTDEVGRGPLAGPIVAAAVILNLNYVEDKKLILGVKDSKKLTQKARYELSQTIK 158

Query: 77  SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135
             A+  SI+  +++ IDK  I     + +  AV  L++     L DG ++ ++LP +   
Sbjct: 159 EKALSYSIAVINNKEIDKRGISWCNNEVLRKAVLGLKLPVELVLSDGYAV-KNLPVRNEF 217

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           VIKGDS S+SIA+ASIIAKV RD LMR   K Y +Y F S+ GY T +H   IK+ G   
Sbjct: 218 VIKGDSKSVSIASASIIAKVYRDELMREYSKVYTEYNFQSNSGYGTKEHIGAIKKYGTCK 277

Query: 196 IHRLTFRPLRNL 207
           IHRL+F  LRN+
Sbjct: 278 IHRLSF--LRNI 287


>gi|332532224|ref|ZP_08408105.1| ribonuclease HII [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038322|gb|EGI74767.1| ribonuclease HII [Pseudoalteromonas haloplanktis ANT/505]
          Length = 200

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/187 (43%), Positives = 112/187 (59%), Gaps = 2/187 (1%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81
           N+  +AG+DEVGRG L G VV AA+ILDP     G+ DSKK++ KKR+ L  +I   A+ 
Sbjct: 7   NVSLIAGVDEVGRGPLVGDVVTAAVILDPTKPIAGLADSKKLTDKKRQALAIEIKEKALC 66

Query: 82  -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            +    S   ID+ NI  AT+ A+  AVE L   P    IDG  +P+ L   A AV+KGD
Sbjct: 67  YAYGRCSPTEIDELNILHATMLAMSRAVEALSTQPEFVFIDGNRLPK-LTMPAQAVVKGD 125

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S+   I+AASI+AKV RD  M     ++P+YGF  H GYPT  H   +++ G    HR +
Sbjct: 126 SLVAEISAASILAKVARDDEMLELDARHPEYGFAGHKGYPTKAHFAALEQYGAIDEHRKS 185

Query: 201 FRPLRNL 207
           F+P++ +
Sbjct: 186 FKPVQRV 192


>gi|227524479|ref|ZP_03954528.1| ribonuclease HII [Lactobacillus hilgardii ATCC 8290]
 gi|227088349|gb|EEI23661.1| ribonuclease HII [Lactobacillus hilgardii ATCC 8290]
          Length = 255

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/194 (41%), Positives = 116/194 (59%), Gaps = 8/194 (4%)

Query: 20  EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E++ W      VAG+DEVGRG LAGPVV  A IL  +     +NDSK+++ + R  L  +
Sbjct: 63  ERSFWHRGVNYVAGVDEVGRGPLAGPVVACATILPRDFDLIQVNDSKQLTPEIRARLAPQ 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI I +    ++ ID+ NI++AT  A+  AV NL   P   ++D   IP  +P   
Sbjct: 123 IKREAISIGLGLVDNKGIDRLNIYEATRVAMKQAVNNLTQQPDEIIVDAMQIP--VPIHQ 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGD+ S+S++AASI+AKV RD LM    ++YP+Y F  + GY T KH   +K+ G 
Sbjct: 181 TRLIKGDAKSISVSAASIVAKVYRDNLMDQYAQQYPEYDFRHNAGYGTTKHLSALKKYGA 240

Query: 194 SCIHRLTFRPLRNL 207
           + IHR TF P++N 
Sbjct: 241 TPIHRKTFAPIKNF 254


>gi|117928761|ref|YP_873312.1| ribonuclease H [Acidothermus cellulolyticus 11B]
 gi|189043529|sp|A0LV66|RNH2_ACIC1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|117649224|gb|ABK53326.1| Ribonuclease H [Acidothermus cellulolyticus 11B]
          Length = 307

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/197 (42%), Positives = 111/197 (56%), Gaps = 4/197 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKRE 69
           +  E  +    + PVAG+DE GRGA AGP+VVAA+IL  D  N   G+ DSK+++   RE
Sbjct: 32  YRYERRLARLGLEPVAGVDEAGRGACAGPLVVAAVILGSDRRNRIAGLADSKQLTPAARE 91

Query: 70  ELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            +Y +I S A+  S+       +D+  +H A +  +  AV  L V P   L DG SI   
Sbjct: 92  SIYNEIISRALAWSVVVIPSSEVDELGVHAANITGMRRAVAGLAVRPAYVLTDGFSIA-G 150

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L     AV KGD     IAAAS++AKVTRDRLM   H+K+P Y F +H GY TA H+  +
Sbjct: 151 LNAPGLAVCKGDEAVACIAAASVVAKVTRDRLMVELHEKFPMYEFATHKGYVTAGHRAAL 210

Query: 189 KEKGPSCIHRLTFRPLR 205
              GP   HR +F  +R
Sbjct: 211 ARHGPCPEHRRSFVTVR 227


>gi|289766192|ref|ZP_06525570.1| ribonuclease HII [Fusobacterium sp. D11]
 gi|289717747|gb|EFD81759.1| ribonuclease HII [Fusobacterium sp. D11]
          Length = 213

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/192 (42%), Positives = 116/192 (60%), Gaps = 11/192 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84
           V G+DE GRG LAGPVV AA+IL   +     INDSKK++ KKRE+LY+ I  +  +++ 
Sbjct: 15  VIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSKKLTEKKREKLYDIIMKNFYVAVG 74

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRS--------ALIDGRSIPEDLPCQAFAV 136
            ++ + IDK NI  A   A+  A+++L+ I +          L+DG    ++   +   +
Sbjct: 75  ISTVEEIDKMNILNADFLAMRRALKDLENIKKDKKDKKEYIVLVDGNLKIKEYSGKQLPI 134

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SC 195
           +KGD+ SLS+AAASIIAKVTRDR M+     YPDY F+ H GY T  H + IK+KG    
Sbjct: 135 VKGDAKSLSVAAASIIAKVTRDRFMKDLANIYPDYSFEKHKGYGTKAHIEAIKDKGAIEG 194

Query: 196 IHRLTF-RPLRN 206
           +HR  F R + N
Sbjct: 195 VHRKVFLRKINN 206


>gi|169350423|ref|ZP_02867361.1| hypothetical protein CLOSPI_01191 [Clostridium spiroforme DSM 1552]
 gi|169292743|gb|EDS74876.1| hypothetical protein CLOSPI_01191 [Clostridium spiroforme DSM 1552]
          Length = 206

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/183 (43%), Positives = 111/183 (60%), Gaps = 10/183 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + G+DE GRG +AG +VVA +I         INDSK++S+KKREELY  I  +A+   I 
Sbjct: 18  IIGLDEAGRGPMAGELVVAGVIFPKGYYDERINDSKQLSNKKREELYGLIVENALAYDIE 77

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF---AVIKGDS 141
             S + +DK N+++A+  A+   + NL      AL D       +P   F   A+IKGD+
Sbjct: 78  IVSVEDVDKLNVYQASKQAMEKCISNLMRDKMFALSDA------MPLSYFNHEAIIKGDA 131

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            S+SI AASI+AKVTRD LM    K YP+YGFD H GY T  H++ +++ GP  IHR +F
Sbjct: 132 KSISIGAASILAKVTRDHLMEEYAKIYPEYGFDKHKGYVTKMHKEALEKYGPCPIHRKSF 191

Query: 202 RPL 204
            P+
Sbjct: 192 APV 194


>gi|71082816|ref|YP_265535.1| ribonuclease HII (RNase HII) [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|97189139|sp|Q4FPF7|RNH2_PELUB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|71061929|gb|AAZ20932.1| Ribonuclease HII (RNase HII) [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 186

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/185 (42%), Positives = 118/185 (63%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82
           M  +AG+DEVGRG+L GPV  AA+IL+ +     + DSK ++  KREEL + I  ++I +
Sbjct: 1   MKILAGVDEVGRGSLIGPVYAAAVILNNSIDKKLLKDSKTLTKDKREELEKYIKKNSIWA 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I  AS + I+K NI  A+L A+  A+  L++ P   LIDG  +P+    +   VIKGD  
Sbjct: 61  IGQASTKEIEKINILHASLLAMKRAILKLKIKPSLVLIDGNKLPDLKNYKLEYVIKGDQK 120

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             SI+AASIIAKV+RD+ +    K++ +YG+D++ GY T +H + IK+ G +  HR TF 
Sbjct: 121 IPSISAASIIAKVSRDKFITKLSKEFNNYGWDTNSGYGTKEHLKAIKQFGITKYHRKTFS 180

Query: 203 PLRNL 207
           P+ +L
Sbjct: 181 PISDL 185


>gi|54294259|ref|YP_126674.1| hypothetical protein lpl1324 [Legionella pneumophila str. Lens]
 gi|81368717|sp|Q5WWX5|RNH2_LEGPL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|53754091|emb|CAH15564.1| hypothetical protein lpl1324 [Legionella pneumophila str. Lens]
          Length = 191

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/185 (44%), Positives = 115/185 (62%), Gaps = 8/185 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83
           +AG+DEVGRG LAG VV AA+IL     P  G+ DSKK+S K+R  L  +I   A+  + 
Sbjct: 9   MAGVDEVGRGPLAGAVVTAAVILKK---PIDGLTDSKKLSPKQRNLLAIRIKEEALAFAY 65

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSI 142
             A  + ID+ NIH ATL A+  AVE L + P + L+DG   P+ ++PC+A  +++GDS+
Sbjct: 66  GRAEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVLVDGAFTPQLNMPCKA--IVQGDSL 123

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKV RD  M    K YP YGF  H GY T  H++ +   GP  IHR ++ 
Sbjct: 124 IPEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYS 183

Query: 203 PLRNL 207
           P+ +L
Sbjct: 184 PVADL 188


>gi|160874612|ref|YP_001553928.1| ribonuclease HII [Shewanella baltica OS195]
 gi|189043658|sp|A9KUL9|RNH2_SHEB9 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|160860134|gb|ABX48668.1| Ribonuclease H [Shewanella baltica OS195]
 gi|315266853|gb|ADT93706.1| Ribonuclease H [Shewanella baltica OS678]
          Length = 210

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 114/188 (60%), Gaps = 6/188 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S K+RE L+++I   A+   + 
Sbjct: 20  IAGVDEVGRGPLVGDVVTAAVILDPNKPISGLNDSKKLSEKRREALFDEICDKALCYHVG 79

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-----EDLPCQAFAVIKG 139
            AS   ID+ NI  AT+ A+  AV  L + P   L+DG   P           + ++IKG
Sbjct: 80  RASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRSPIFVAHNGAGLTSHSIIKG 139

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D +  SI+AASIIAKVTRDR M +    YP YGF  H GYPT  H + I E G    +R 
Sbjct: 140 DGLIASISAASIIAKVTRDREMDVLDAAYPQYGFAKHKGYPTKAHFEAIAEHGVFDQYRK 199

Query: 200 TFRPLRNL 207
           +F+P++ L
Sbjct: 200 SFKPVKAL 207


>gi|126173702|ref|YP_001049851.1| ribonuclease HII [Shewanella baltica OS155]
 gi|166226650|sp|A3D2L9|RNH2_SHEB5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|125996907|gb|ABN60982.1| RNase HII [Shewanella baltica OS155]
          Length = 210

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 114/188 (60%), Gaps = 6/188 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S K+RE L+++I   A+   + 
Sbjct: 20  IAGVDEVGRGPLVGDVVTAAVILDPNKPISGLNDSKKLSEKRREALFDEICDKALCYHVG 79

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-----EDLPCQAFAVIKG 139
            AS   ID+ NI  AT+ A+  AV  L + P   L+DG   P           + ++IKG
Sbjct: 80  RASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRSPIFVAHNGAELTSHSIIKG 139

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D +  SI+AASIIAKVTRDR M +    YP YGF  H GYPT  H + I E G    +R 
Sbjct: 140 DGLIASISAASIIAKVTRDREMDVLDAAYPQYGFAKHKGYPTKAHFEAIAEHGVFDQYRK 199

Query: 200 TFRPLRNL 207
           +F+P++ L
Sbjct: 200 SFKPVKAL 207


>gi|217970566|ref|YP_002355800.1| ribonuclease HII [Thauera sp. MZ1T]
 gi|217507893|gb|ACK54904.1| Ribonuclease H [Thauera sp. MZ1T]
          Length = 203

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 80/183 (43%), Positives = 108/183 (59%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           + G+DE GRG L GPVV AA+ILDP     G+ DSKK+S   RE L   I + A+  +++
Sbjct: 16  ICGVDEAGRGPLCGPVVAAAVILDPARPIEGLADSKKLSEAARERLAPLIRARALAWAVA 75

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID+ NI  AT+ A+  AV  L + P    IDG   P+ LP  A A++KGD+   
Sbjct: 76  EASVEEIDRLNILHATMLAMQRAVMALGIAPAEVRIDGNRCPK-LPYPARAIVKGDATEP 134

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI+AASI+AK  RD  MR    ++P YG  +H GYPTA H   +   G    HR +F P+
Sbjct: 135 SISAASILAKTARDAAMRELDAQWPQYGLAAHKGYPTAAHLAALAAHGVQAFHRRSFAPV 194

Query: 205 RNL 207
           + L
Sbjct: 195 KKL 197


>gi|256028260|ref|ZP_05442094.1| ribonuclease HII [Fusobacterium sp. D11]
          Length = 234

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 82/192 (42%), Positives = 116/192 (60%), Gaps = 11/192 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84
           V G+DE GRG LAGPVV AA+IL   +     INDSKK++ KKRE+LY+ I  +  +++ 
Sbjct: 36  VIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSKKLTEKKREKLYDIIMKNFYVAVG 95

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRS--------ALIDGRSIPEDLPCQAFAV 136
            ++ + IDK NI  A   A+  A+++L+ I +          L+DG    ++   +   +
Sbjct: 96  ISTVEEIDKMNILNADFLAMRRALKDLENIKKDKKDKKEYIVLVDGNLKIKEYSGKQLPI 155

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SC 195
           +KGD+ SLS+AAASIIAKVTRDR M+     YPDY F+ H GY T  H + IK+KG    
Sbjct: 156 VKGDAKSLSVAAASIIAKVTRDRFMKDLANIYPDYSFEKHKGYGTKAHIEAIKDKGAIEG 215

Query: 196 IHRLTF-RPLRN 206
           +HR  F R + N
Sbjct: 216 VHRKVFLRKINN 227


>gi|218767115|ref|YP_002341627.1| ribonuclease HII [Neisseria meningitidis Z2491]
 gi|11387099|sp|Q9JX40|RNH2_NEIMA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|121051123|emb|CAM07394.1| ribonuclease HII [Neisseria meningitidis Z2491]
 gi|319411322|emb|CBY91733.1| ribonuclease HII (RNase HII) [Neisseria meningitidis WUE 2594]
          Length = 194

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/184 (44%), Positives = 112/184 (60%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83
            AG+DE GRG L G V  AA+IL +  ++P G+ DSKK+S KKR+ L E I + A+   +
Sbjct: 5   TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKNQAVAWHV 63

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           ++A  + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  
Sbjct: 64  AAAGPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKI 123

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           + I+AAS++AK  RD  M    +++P YGFD H GY T +H + +++ G    HR  F P
Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALEKYGVLPEHRRDFAP 183

Query: 204 LRNL 207
           +RNL
Sbjct: 184 VRNL 187


>gi|299822635|ref|ZP_07054521.1| ribonuclease H [Listeria grayi DSM 20601]
 gi|299816164|gb|EFI83402.1| ribonuclease H [Listeria grayi DSM 20601]
          Length = 259

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/202 (47%), Positives = 128/202 (63%), Gaps = 7/202 (3%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKIS 64
           + E   FE E +  +     +AG+DEVGRG LAGPVV AA+IL PN+    GINDSK++S
Sbjct: 56  LQEMKQFESEYL--KAGYSRIAGVDEVGRGPLAGPVVAAAVIL-PNDFSVTGINDSKQLS 112

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            +KR+  Y+ I   A+ I IS  SH+ ID+ NI++AT  A+  A++NL   P   LID  
Sbjct: 113 EEKRQYYYDIIREQAVSIGISIQSHEVIDQVNIYEATKLAMAEALDNLDPAPDFTLIDAM 172

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +      Q  A+IKGD+ S+SIAAASIIAKVTRD LM+ A + YP Y F  ++GY T  
Sbjct: 173 KL--GYSKQELAIIKGDTKSISIAAASIIAKVTRDSLMKEAEQLYPGYDFAHNMGYGTKL 230

Query: 184 HQQVIKEKGPSCIHRLTFRPLR 205
           H   + ++G   IHRLTF P++
Sbjct: 231 HLAGLDQQGVCPIHRLTFAPVK 252


>gi|304409576|ref|ZP_07391196.1| Ribonuclease H [Shewanella baltica OS183]
 gi|307303934|ref|ZP_07583687.1| Ribonuclease H [Shewanella baltica BA175]
 gi|304352094|gb|EFM16492.1| Ribonuclease H [Shewanella baltica OS183]
 gi|306912832|gb|EFN43255.1| Ribonuclease H [Shewanella baltica BA175]
          Length = 210

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 114/188 (60%), Gaps = 6/188 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S K+RE L+++I   A+   + 
Sbjct: 20  IAGVDEVGRGPLVGDVVTAAVILDPNKPISGLNDSKKLSEKRREALFDEICDKALCYHVG 79

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-----EDLPCQAFAVIKG 139
            AS   ID+ NI  AT+ A+  AV  L + P   L+DG   P           + ++IKG
Sbjct: 80  RASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRSPIFVAHNGAGLTSHSIIKG 139

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D +  SI+AASIIAKVTRDR M +    YP YGF  H GYPT  H + I E G    +R 
Sbjct: 140 DGLIASISAASIIAKVTRDREMDVLDAAYPQYGFAKHKGYPTKAHFEAIAEHGVFDQYRK 199

Query: 200 TFRPLRNL 207
           +F+P++ L
Sbjct: 200 SFKPVKAL 207


>gi|317152482|ref|YP_004120530.1| Ribonuclease H [Desulfovibrio aespoeensis Aspo-2]
 gi|316942733|gb|ADU61784.1| Ribonuclease H [Desulfovibrio aespoeensis Aspo-2]
          Length = 207

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/188 (43%), Positives = 108/188 (57%), Gaps = 11/188 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DE GRG LAGPVV  A IL       G+NDSK++S  KRE LY  I S A+  ++ 
Sbjct: 11  IAGVDEAGRGCLAGPVVAGACILPQTYDLPGLNDSKQLSAAKRETLYPLIRSQAVAWAVG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA-------VI 137
            +    ID+ NI +AT  A+  AV  L++ PR   IDG  I   +P  A         VI
Sbjct: 71  LSWPGEIDRVNILQATFLAMGRAVRALKLSPRFLRIDGNKI---IPAHALGLGVSQEWVI 127

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
            GD    +I+AAS++AK  RDRLM     +YP YG + H+GY T +H + +   GP  +H
Sbjct: 128 GGDGSVPAISAASVLAKTFRDRLMVKLAARYPGYGLERHMGYGTKEHMEAVARLGPCAMH 187

Query: 198 RLTFRPLR 205
           RLTFR +R
Sbjct: 188 RLTFRGVR 195


>gi|15675138|ref|NP_269312.1| ribonuclease HII [Streptococcus pyogenes M1 GAS]
 gi|32171707|sp|Q99ZM6|RNH2_STRP1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|13622298|gb|AAK34033.1| putative ribonuclease HII [Streptococcus pyogenes M1 GAS]
          Length = 263

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 82/197 (41%), Positives = 120/197 (60%), Gaps = 6/197 (3%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  + +K    +AGIDEVGRG LAGPVV A +IL       G+NDSKKI   K E +Y+ 
Sbjct: 62  EKALYKKGYKAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKAKHETIYQA 121

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLP 130
           +   A+ I I    +Q ID+ NI++AT  A+  A++ L+     P   LID  ++  D+ 
Sbjct: 122 VKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTL--DIA 179

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               +++KGD+ SLSIAAASI+AKVTRD++M    + +P Y F  + GY T +H Q +K 
Sbjct: 180 ISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYDFAKNAGYGTKEHLQGLKA 239

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR +F P++++
Sbjct: 240 YGITPIHRKSFEPVKSM 256


>gi|317052287|ref|YP_004113403.1| ribonuclease H [Desulfurispirillum indicum S5]
 gi|316947371|gb|ADU66847.1| Ribonuclease H [Desulfurispirillum indicum S5]
          Length = 201

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 82/190 (43%), Positives = 111/190 (58%), Gaps = 1/190 (0%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E +   R  +   +AG+DEVGRG LAGPV  AA+IL  +     I DSKK+S  +R  L 
Sbjct: 5   EFDQQWRNCHTQHIAGVDEVGRGPLAGPVCAAAVILPADFSDSRIRDSKKLSALQRRTLS 64

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           + I  S +  S+++   + ID  NI  AT  A++ A+  L + P   L+DG         
Sbjct: 65  DLIRHSCLAWSVATVDCEVIDTINILHATRLAMWQALSQLPMTPELLLVDGMDNSFFPAV 124

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   VIKGD++SLSIAAASI+AKV RD LM    ++YP YGF  H GY TA+H+Q I+E 
Sbjct: 125 RGEKVIKGDNLSLSIAAASIVAKVHRDELMEALDQRYPQYGFARHKGYGTAQHRQAIREH 184

Query: 192 GPSCIHRLTF 201
           G    HR +F
Sbjct: 185 GLCPQHRRSF 194


>gi|298490081|ref|YP_003720258.1| ribonuclease H ['Nostoc azollae' 0708]
 gi|298231999|gb|ADI63135.1| Ribonuclease H ['Nostoc azollae' 0708]
          Length = 221

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/203 (40%), Positives = 119/203 (58%), Gaps = 7/203 (3%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSK 61
           +PE   +EL        +  VAG+DEVGRGAL GPVV AA++L  + +P      I DSK
Sbjct: 17  LPESSWWELSTCANIHGL--VAGVDEVGRGALFGPVVAAAVMLSADALPKLMAAKIKDSK 74

Query: 62  KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K+S  +R +L ++I    +   I  A+   ID+ NI +ATL A+  AV  L+V P   L+
Sbjct: 75  KLSASRRTQLAQQINGLVLDWKIGYATTAEIDQFNILQATLLAMKRAVLKLKVPPALCLV 134

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG  + +DL      +IKGD  SL+IA+ASI+AKV RD L+     KYP Y  + + GY 
Sbjct: 135 DGNQLVKDLLIPQETMIKGDERSLNIASASIMAKVWRDDLLLRLASKYPMYELERNKGYG 194

Query: 181 TAKHQQVIKEKGPSCIHRLTFRP 203
           + +H   +++ G S +HR +FRP
Sbjct: 195 SQRHLLALRKYGASPLHRRSFRP 217


>gi|228474964|ref|ZP_04059692.1| ribonuclease HII [Staphylococcus hominis SK119]
 gi|228270949|gb|EEK12337.1| ribonuclease HII [Staphylococcus hominis SK119]
          Length = 255

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 79/183 (43%), Positives = 113/183 (61%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG LAGPVV  A+IL+  +   G++DSKK+S  KR+ L E++       +  
Sbjct: 74  ICGIDEVGRGPLAGPVVACAVILNKEHQYLGLDDSKKVSATKRKILNEQLKEGVYDYAYG 133

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID+ NI+ AT  A+  A+  L+  P   LID  ++   +P    ++IKGD+ S+
Sbjct: 134 IASAEEIDEFNIYNATKLAMERAINQLKQQPNHLLIDAMTLDNAMP--QTSIIKGDAKSV 191

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASI+AK  RD LM     KYP Y F+ +VGY T  H Q +K+ G +  HR TF P+
Sbjct: 192 SIAAASIMAKEYRDGLMAAVALKYPGYDFEKNVGYGTKSHLQGLKQLGITPYHRKTFEPV 251

Query: 205 RNL 207
           +++
Sbjct: 252 KSM 254


>gi|157825403|ref|YP_001493123.1| ribonuclease HII [Rickettsia akari str. Hartford]
 gi|166226646|sp|A8GMJ0|RNH2_RICAH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157799361|gb|ABV74615.1| ribonuclease HII [Rickettsia akari str. Hartford]
          Length = 193

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 91/192 (47%), Positives = 122/192 (63%), Gaps = 7/192 (3%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           HFE     ++ + + VAGIDE GRG LAGPVV +A+I+D  NI  GI DSKK+S KKR  
Sbjct: 7   HFE-----KKYHNYIVAGIDEAGRGPLAGPVVASAVIIDNANIIHGIKDSKKLSKKKRAL 61

Query: 71  LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           LYE+ITS+ + +++  +H  IDK NI +AT  A   A  NL V P   L+DG     D  
Sbjct: 62  LYEQITSNYVWAVAIITHTEIDKINILEATKKACSIAAANLNVKPEIVLVDGNMQFSDE- 120

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            +  +++ GD++SLSIAAASIIAKVTRDRLM     K+P Y +  + GY T +H + I +
Sbjct: 121 -RFISIVNGDNLSLSIAAASIIAKVTRDRLMLELSAKFPQYLWHKNSGYGTKEHLEAINK 179

Query: 191 KGPSCIHRLTFR 202
            G S  HR +F+
Sbjct: 180 YGLSPYHRKSFK 191


>gi|57234417|ref|YP_181512.1| ribonuclease HII [Dehalococcoides ethenogenes 195]
 gi|97182406|sp|Q3Z8D7|RNH2_DEHE1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|57224865|gb|AAW39922.1| ribonuclease HII [Dehalococcoides ethenogenes 195]
          Length = 211

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 84/197 (42%), Positives = 112/197 (56%), Gaps = 10/197 (5%)

Query: 20  EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREEL 71
           EK++W      +AG+DE GRG LAGPVV  A+I+ P    +    + DSK ++ +KRE L
Sbjct: 12  EKHLWKQGFSSIAGLDEAGRGCLAGPVVAGAVIMPPRLKGDWVAMVRDSKVLTPEKREYL 71

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y  I S AI   +    +  ID   I  AT  A+  AVE+L   P   L+D   +P D+P
Sbjct: 72  YCHIVSMAISFGVGVVDNTQIDCLGIAPATRLAMKQAVEHLDCRPDFLLVDYLKLP-DIP 130

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                ++ GD++  SIA ASIIAKV+RDRLM      YP Y    H GY TA H + I +
Sbjct: 131 LPQKGIVDGDALCFSIACASIIAKVSRDRLMCELEATYPGYHLAKHKGYGTALHMECISQ 190

Query: 191 KGPSCIHRLTFRPLRNL 207
           KG S IHR TF PL+++
Sbjct: 191 KGISPIHRRTFAPLKSM 207


>gi|260061789|ref|YP_003194869.1| ribonuclease HII [Robiginitalea biformata HTCC2501]
 gi|88785921|gb|EAR17090.1| ribonuclease HII [Robiginitalea biformata HTCC2501]
          Length = 198

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/181 (43%), Positives = 115/181 (63%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-ISS 85
           AG DE GRG LAGPV  AA+IL        +NDSKK+S  +RE L  KI   A+ + ++ 
Sbjct: 12  AGTDEAGRGCLAGPVTAAAVILPERFEDPLLNDSKKLSADQRERLAPKILREALATGVAH 71

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIP-EDLPCQAFAVIKGDSIS 143
                ID+ NI +A+L A++ A++ L + P +  +DG R +P E +P Q   +++GD   
Sbjct: 72  IPPATIDEINILQASLQAMHRALDQLGMRPEAIAVDGNRFLPYEGIPYQC--LVRGDGRY 129

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           L+IAAAS++AK  RD  MR  H++YP YG+D + GYPT +H++ +++ GPS  HR +FR 
Sbjct: 130 LNIAAASVLAKTARDARMRELHREYPQYGWDRNKGYPTQEHREALRKHGPSPYHRQSFRL 189

Query: 204 L 204
           L
Sbjct: 190 L 190


>gi|323700101|ref|ZP_08112013.1| Ribonuclease H [Desulfovibrio sp. ND132]
 gi|323460033|gb|EGB15898.1| Ribonuclease H [Desulfovibrio desulfuricans ND132]
          Length = 213

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 80/187 (42%), Positives = 109/187 (58%), Gaps = 9/187 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DE GRG LAGPVV  A IL       G++DSKK++  KRE LY +I   A+   + 
Sbjct: 17  IAGVDEAGRGCLAGPVVAGACILPAEYDLPGLDDSKKLTAAKREALYPRIREQAVAWGLG 76

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPR------SALIDGRSIPEDLPCQAFAVIK 138
            A    ID+ NI +AT  A+  AV  L+  PR        LI G ++  D+P +   V++
Sbjct: 77  VAWPWEIDEINILQATFRAMSRAVWALKAEPRFLRIDGDKLIPGHALQRDIPQEC--VVQ 134

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD    +I+AAS++AK  RDRLM    ++YP YG   H+GY T  H   I+E GP  +HR
Sbjct: 135 GDGKVPAISAASVLAKTFRDRLMVRLARRYPGYGLAKHMGYGTEAHVAAIRELGPCRLHR 194

Query: 199 LTFRPLR 205
           LTFR +R
Sbjct: 195 LTFRKVR 201


>gi|330836476|ref|YP_004411117.1| Ribonuclease H [Spirochaeta coccoides DSM 17374]
 gi|329748379|gb|AEC01735.1| Ribonuclease H [Spirochaeta coccoides DSM 17374]
          Length = 210

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/180 (45%), Positives = 107/180 (59%), Gaps = 6/180 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           + GIDE GRG LAGPV  AA+IL P+     + DSKK+S K+R      I   A+  I  
Sbjct: 20  ICGIDEAGRGPLAGPVCAAAVILPPDFPRDILGDSKKLSEKQRLAAEIIIREQAVWGIGW 79

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA---LIDG-RSIPEDLPCQAFAVIKGDS 141
           AS Q ID++NI +AT  A+  AVE +    R     LIDG R+ P  +P  + A+IKGDS
Sbjct: 80  ASAQEIDRYNILQATFRAMRRAVEKVIAQDRQVELLLIDGNRTFPHAIP--SAAIIKGDS 137

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
               I AASI+AK  RDR MR   +K+P+Y F+ H GYP+ +H    +  GP  +HRL+F
Sbjct: 138 KVPEIMAASILAKTARDRFMRRMAEKWPEYNFEQHKGYPSRQHVSAYRTHGPCPLHRLSF 197


>gi|256545488|ref|ZP_05472850.1| ribonuclease HII [Anaerococcus vaginalis ATCC 51170]
 gi|256398884|gb|EEU12499.1| ribonuclease HII [Anaerococcus vaginalis ATCC 51170]
          Length = 210

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 80/177 (45%), Positives = 111/177 (62%), Gaps = 3/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AGIDEVGRG LAGPVV  A+I+  ++   G+ DSKK+S K+  ELY+KI   +I  S  
Sbjct: 24  IAGIDEVGRGPLAGPVVACAVIMKKDSHIEGVTDSKKLSKKRMNELYQKIIDDSISYSFG 83

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A++  IDK NI +AT  A+  A+E L+  P+  LID   I  D   +   ++KGD    
Sbjct: 84  YANNILIDKINIKEATKLAMKDALEGLEKKPQIVLIDAERI--DTHIKQLNIVKGDLYEY 141

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +I+ ASI+AKV RD++M    K YP Y F+S+VGY T KH + +++ G   IHR TF
Sbjct: 142 AISCASILAKVRRDKIMENFSKIYPYYSFESNVGYGTKKHYEGLEKFGECPIHRKTF 198


>gi|307610074|emb|CBW99613.1| hypothetical protein LPW_13821 [Legionella pneumophila 130b]
          Length = 191

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 83/185 (44%), Positives = 115/185 (62%), Gaps = 8/185 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83
           +AG+DEVGRG LAG VV AA+IL     P  G+ DSKK+S K+R  L  +I   A+  + 
Sbjct: 9   MAGVDEVGRGPLAGAVVTAAVILKK---PIDGLTDSKKLSPKQRNLLAIRIKEEALAFAY 65

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSI 142
             A  + ID+ NIH ATL A+  AVE L + P + L+DG   P+ ++PC+A  +++GDS+
Sbjct: 66  GRAEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVLVDGAFTPQLNIPCKA--IVQGDSL 123

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKV RD  M    K YP YGF  H GY T  H++ +   GP  IHR ++ 
Sbjct: 124 IPEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYS 183

Query: 203 PLRNL 207
           P+ +L
Sbjct: 184 PVADL 188


>gi|295094900|emb|CBK83991.1| Ribonuclease HII [Coprococcus sp. ART55/1]
          Length = 251

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 89/191 (46%), Positives = 122/191 (63%), Gaps = 4/191 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           FE E    +K    + GIDEVGRG LAGPVV AA+IL  +     +NDSK+++ KKRE L
Sbjct: 59  FEFERKYADKGY--ICGIDEVGRGPLAGPVVAAAVILPKDCDILYLNDSKQLTPKKREAL 116

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y++I + A+ + +  A+ + ID+ N+  A  +A+  A+  LQV P+  L D  +IP  + 
Sbjct: 117 YDEIMAKAVAVGVGMANEKVIDEINVLNADYEAMKQAISKLQVKPQLLLNDAVNIP-GVD 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            +   +IKGD++S SIAAASIIAKVTRDRLM      YP YGF  ++GY TA+H   +K+
Sbjct: 176 IEQVGIIKGDTLSASIAAASIIAKVTRDRLMVEYDSLYPGYGFAKNMGYGTAEHIDALKK 235

Query: 191 KGPSCIHRLTF 201
            GP  IHR TF
Sbjct: 236 IGPCAIHRRTF 246


>gi|303241143|ref|ZP_07327651.1| Ribonuclease H [Acetivibrio cellulolyticus CD2]
 gi|302591270|gb|EFL61010.1| Ribonuclease H [Acetivibrio cellulolyticus CD2]
          Length = 260

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 97/192 (50%), Positives = 118/192 (61%), Gaps = 4/192 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            FE EA V       +AGIDE GRG LAGPVV AA+IL  N    G+NDSKK+S K+REE
Sbjct: 66  RFEKEAYVMGAKF--IAGIDEAGRGPLAGPVVAAAVILPENVFINGLNDSKKLSEKQREE 123

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY  IT  AI   +     + ID+ NI  AT  A+  AVE L+V P   LID   + + L
Sbjct: 124 LYSIITEKAIAYDVGIVDEKVIDELNILNATKMAMEIAVEGLKVKPDILLIDAVKL-DSL 182

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             +  ++IKGD++S+SIAAASIIAKVTRDR +      YPDYGF  H GY T +H   IK
Sbjct: 183 KIKQESIIKGDALSISIAAASIIAKVTRDRYIDQMDSVYPDYGFRKHKGYGTKEHIDAIK 242

Query: 190 EKGPSCIHRLTF 201
           + G   IHR TF
Sbjct: 243 KFGICPIHRTTF 254


>gi|116333443|ref|YP_794970.1| ribonuclease HII [Lactobacillus brevis ATCC 367]
 gi|122269870|sp|Q03S83|RNH2_LACBA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|116098790|gb|ABJ63939.1| RNase HII [Lactobacillus brevis ATCC 367]
          Length = 257

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 90/194 (46%), Positives = 125/194 (64%), Gaps = 9/194 (4%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEK 74
           E+  W     VAGIDEVGRG LAGPVV +A+IL P+ +IP  +NDSK+++ K+RE LY  
Sbjct: 64  ERPFWARGERVAGIDEVGRGPLAGPVVTSAVILPPDFDIPL-VNDSKQLTAKERERLYPL 122

Query: 75  ITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I + A  +SI   S   ID+ NI++AT  A+  AV  L + P+  ++D   IP D+P   
Sbjct: 123 ILAQAQSVSIGIGSPALIDQINIYQATRVAMQRAVLGLGLAPQQLIVDAMQIPVDVP--Q 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGD+ S S+AAASI+AKV RD LM    + YP YGF  + GY TA+H Q + ++G 
Sbjct: 181 IRLIKGDAKSASVAAASIVAKVYRDHLMATYDELYPGYGFAQNAGYGTAEHLQGLADRGV 240

Query: 194 SCIHRLTFRPLRNL 207
           + IHR TF P++ +
Sbjct: 241 TPIHRRTFSPVQKI 254


>gi|15606955|ref|NP_214337.1| RNase HII [Aquifex aeolicus VF5]
 gi|7227919|sp|O67768|RNH2_AQUAE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|2984206|gb|AAC07736.1| RNase HII [Aquifex aeolicus VF5]
          Length = 196

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 84/201 (41%), Positives = 123/201 (61%), Gaps = 17/201 (8%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           ++ELE  + EK +  VAG+DE GRG LAGPVV AA+IL P   PF   DSKK++ K+REE
Sbjct: 3   NYELE--LWEKGLL-VAGVDEAGRGPLAGPVVAAAVILPPFTEPFIKGDSKKLTKKEREE 59

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ-----VIPRSALIDGRS 124
            YE+I + A+ +  +      ID+ NI +AT  A+  A+++L+     VI     ++G +
Sbjct: 60  AYEEIKNKALAVGTAVVDSAVIDRVNILRATKLAMKRALKDLKYHYDIVITDYVKLEGEN 119

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
                      ++KGD  SL+ A ASIIAKV RD++M I HK YPD+ F S+ GYP+  H
Sbjct: 120 --------CMPLVKGDEKSLNCACASIIAKVIRDKIMEIYHKIYPDFNFASNKGYPSKTH 171

Query: 185 QQVIKEKGPSCIHRLTFRPLR 205
            + +++   + IHR +F PL+
Sbjct: 172 LEKVEKGEYTEIHRKSFSPLK 192


>gi|330993887|ref|ZP_08317819.1| Ribonuclease HII [Gluconacetobacter sp. SXCC-1]
 gi|329759155|gb|EGG75667.1| Ribonuclease HII [Gluconacetobacter sp. SXCC-1]
          Length = 217

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 80/188 (42%), Positives = 116/188 (61%), Gaps = 8/188 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS--A 79
           VAG+DEVGRG LAGPVV AA++  P ++P      ++DSKK+    R  LY+ + +S   
Sbjct: 14  VAGVDEVGRGPLAGPVVAAAVMF-PGSVPGVLADRLDDSKKLKPALRARLYDVLLASPDV 72

Query: 80  IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
           +I + +AS   I+++NI +A+  A+  AV  L   P   L+DG + P D  C A  V+ G
Sbjct: 73  LIGVGAASVAEIERYNILRASWLAMQRAVGRLPRSPEFILVDGNAAP-DFGCPAQCVVGG 131

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D ISLSIAAAS++AKV RDRLM    +++P YG++ + GY TA H+  +  +G S  HR 
Sbjct: 132 DGISLSIAAASVVAKVIRDRLMARLARRWPAYGWERNAGYGTAIHRAGLLAQGASPHHRA 191

Query: 200 TFRPLRNL 207
            F  +R +
Sbjct: 192 AFGTVRRI 199


>gi|254499206|ref|ZP_05111886.1| RNase H ribonuclease [Legionella drancourtii LLAP12]
 gi|254351596|gb|EET10451.1| RNase H ribonuclease [Legionella drancourtii LLAP12]
          Length = 187

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 84/185 (45%), Positives = 112/185 (60%), Gaps = 8/185 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
           +AG+DEVGRG LAG VV AA+IL +P     G+ DSKK++ KKR+ L  +I   A+  + 
Sbjct: 7   IAGVDEVGRGPLAGAVVTAAVILKEPIE---GLADSKKLTPKKRKLLSLQIQERALAFAY 63

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSI 142
             A    ID  NIH+ATL A+  AVE L + P   L+DG   P   +PC+A  +I+GDS+
Sbjct: 64  GRAEVDEIDALNIHQATLLAMRRAVEALPIKPDEVLVDGAHAPRLAVPCRA--IIQGDSL 121

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKV RD  M      YP YGF  H GYPT  H++ +   GP  IHR ++ 
Sbjct: 122 IPEISAASILAKVLRDEEMEALDAIYPGYGFAGHKGYPTVAHREALVHLGPCVIHRRSYA 181

Query: 203 PLRNL 207
           P+  L
Sbjct: 182 PVAAL 186


>gi|302525179|ref|ZP_07277521.1| ribonuclease HII [Streptomyces sp. AA4]
 gi|302434074|gb|EFL05890.1| ribonuclease HII [Streptomyces sp. AA4]
          Length = 257

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 76/194 (39%), Positives = 114/194 (58%), Gaps = 6/194 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN---IPFGINDSKKISHKKR 68
           + L+  +  + + PVAG+DE G GA AGP+VVA+ +L P +   +P  + DSK ++ K R
Sbjct: 3   WGLQGALERRGLGPVAGVDEAGAGACAGPLVVASCVLRPGDAARLPE-LTDSKMLTAKAR 61

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           + +Y+++   A+  S+     + +D   I    L+ +  AV  L+  P   L DG  +P 
Sbjct: 62  DRVYDRVLQRALDYSVIVIPSEQVDLLGIRVMNLEGMRRAVAGLRTHPGYVLTDGFPVP- 120

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +P    AVIKGD    SIAAAS++AKVTRDR+M   H++ P YGFD H GY T+ H   
Sbjct: 121 GIPAPNVAVIKGDRSVASIAAASVLAKVTRDRIMAGLHEELPVYGFDVHKGYSTSDHLAA 180

Query: 188 IKEKGPSCIHRLTF 201
           + E GPS +HR ++
Sbjct: 181 LSEHGPSPVHRWSY 194


>gi|226313196|ref|YP_002773090.1| ribonuclease HII [Brevibacillus brevis NBRC 100599]
 gi|226096144|dbj|BAH44586.1| ribonuclease HII [Brevibacillus brevis NBRC 100599]
          Length = 258

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 85/195 (43%), Positives = 110/195 (56%), Gaps = 7/195 (3%)

Query: 18  VREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           V EK M+      + GIDEVGRG LAGPVV  A+ L  +    G+NDSKKI    RE   
Sbjct: 63  VYEKAMFDKGHQYIFGIDEVGRGPLAGPVVACAVCLPKDFYLPGLNDSKKIPVSTREAFC 122

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E I   A+ + I       ID  NI  AT +A+  A++   + P   LID   +   + C
Sbjct: 123 EIIQRDALAVGIGIVDAARIDAINILAATKEAMKLAIQQASIAPDVLLIDAVQL-TGMNC 181

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   +I GD+ S+SIAAASI+AKVTRDRLM    ++YP YGFD H GY T +H   I   
Sbjct: 182 EQVPIIGGDAKSVSIAAASIVAKVTRDRLMAQYAEEYPAYGFDKHAGYGTPEHLAAISRF 241

Query: 192 GPSCIHRLTFRPLRN 206
           GP+ IHR TF  ++ 
Sbjct: 242 GPTPIHRKTFTGVKE 256


>gi|188586001|ref|YP_001917546.1| RNase HII [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|229470478|sp|B2A2P0|RNH2_NATTJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|179350688|gb|ACB84958.1| RNase HII [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 198

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 83/187 (44%), Positives = 116/187 (62%), Gaps = 3/187 (1%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAII 81
           M    GIDE G GA A  V V+A +LDP   I   + DSK+++ KKRE L E+I   A+ 
Sbjct: 1   MMYYCGIDEAGFGAGAAQVYVSACVLDPQKPINESLTDSKQLTPKKRELLAEEIKQDALT 60

Query: 82  -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             I++AS + I+K NI KAT+ A+  ++E L V P    IDG + PE +P     V+KGD
Sbjct: 61  WCIATASVEEIEKLNIRKATILAMKRSLEGLTVKPDMVYIDGINSPE-VPFPVETVVKGD 119

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S   +I+AASI+AKV RD  M    ++YP+YGF  H GY T  H + I++ GPS IHR T
Sbjct: 120 SKIPAISAASILAKVARDNRMLEYDEQYPEYGFKDHKGYLTKNHIKAIQKYGPSPIHRKT 179

Query: 201 FRPLRNL 207
           ++P++ +
Sbjct: 180 YKPIKKI 186


>gi|58696709|ref|ZP_00372256.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila simulans]
 gi|58698315|ref|ZP_00373232.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58535188|gb|EAL59270.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58537106|gb|EAL60222.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila simulans]
          Length = 180

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 80/177 (45%), Positives = 114/177 (64%), Gaps = 2/177 (1%)

Query: 29  IDEVGRGALAGPVVVAAII-LDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87
           +DEVGRG LAGPV+ AA++ +D N I  GINDSKK++ + R+ LYEKI S A   I  AS
Sbjct: 1   MDEVGRGPLAGPVISAAVVFIDRNTIIDGINDSKKLTPQCRQVLYEKIISVAKFGIGMAS 60

Query: 88  HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147
            + I+ +NI +AT  ++  A+ +L +     L+DG   PE +  Q  +++ GD++S SIA
Sbjct: 61  VEEINSYNILQATKLSMKRALIDLDLELDYVLVDGNQPPE-VKWQVKSIVNGDNLSTSIA 119

Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           AASI+AKVTRDRLM+  H K+P+Y +  + GY T +H   I   G +  HR  F P+
Sbjct: 120 AASIVAKVTRDRLMQELHNKHPEYNWYKNKGYGTKEHLNAIGLYGITEHHRRNFAPI 176


>gi|325570947|ref|ZP_08146566.1| ribonuclease HII [Enterococcus casseliflavus ATCC 12755]
 gi|325156273|gb|EGC68457.1| ribonuclease HII [Enterococcus casseliflavus ATCC 12755]
          Length = 254

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 94/200 (47%), Positives = 127/200 (63%), Gaps = 5/200 (2%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E   FE EA   ++    +AG+DEVGRG LAGPVV AA+IL       G+NDSK++S KK
Sbjct: 57  EMMRFENEAF--QQGARFIAGLDEVGRGPLAGPVVSAAVILPKECQILGLNDSKQLSAKK 114

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           REEL+ +I + A+ + I   S + ID+ NI++A+  A+  A+ +L V P   LID  +I 
Sbjct: 115 REELFIEIQNKAVAVGIGVVSPEEIDRINIYQASRLAMKEALIDLAVKPEHLLIDAMTIE 174

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            D+P Q+  +IKGD+ S+SIAAASIIAKV RD LM+  H  YP YGFD + GY T  H +
Sbjct: 175 TDIPQQS--LIKGDARSISIAAASIIAKVYRDNLMKDFHDVYPFYGFDQNAGYGTKVHLE 232

Query: 187 VIKEKGPSCIHRLTFRPLRN 206
            +   G   IHR TF P++ 
Sbjct: 233 GLAAHGICPIHRKTFAPVKQ 252


>gi|314936593|ref|ZP_07843940.1| ribonuclease HII [Staphylococcus hominis subsp. hominis C80]
 gi|313655212|gb|EFS18957.1| ribonuclease HII [Staphylococcus hominis subsp. hominis C80]
          Length = 255

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 79/183 (43%), Positives = 113/183 (61%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG LAGPVV  A+IL+  +   G++DSKK+S  KR+ L E++       +  
Sbjct: 74  ICGIDEVGRGPLAGPVVACAVILNKEHQYLGLDDSKKVSATKRKILNEQLKEGVYDYAYG 133

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID+ NI+ AT  A+  A+  L+  P   LID  ++   +P    ++IKGD+ S+
Sbjct: 134 IASAEEIDEFNIYNATKLAMERAINQLKQQPNHLLIDAMTLDNAMP--QTSIIKGDAKSV 191

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASI+AK  RD LM     KYP Y F+ +VGY T  H Q +K+ G +  HR TF P+
Sbjct: 192 SIAAASIMAKEYRDGLMAEVALKYPGYDFEKNVGYGTKSHLQGLKQLGITPYHRKTFEPV 251

Query: 205 RNL 207
           +++
Sbjct: 252 KSM 254


>gi|270308093|ref|YP_003330151.1| ribonuclease HII [Dehalococcoides sp. VS]
 gi|270153985|gb|ACZ61823.1| ribonuclease HII [Dehalococcoides sp. VS]
          Length = 211

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 84/197 (42%), Positives = 110/197 (55%), Gaps = 10/197 (5%)

Query: 20  EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREEL 71
           EK +W      +AG+DE GRG LAGPVV  A+I+ P         + DSK ++ +KRE L
Sbjct: 12  EKQLWKQGFSSIAGLDEAGRGCLAGPVVAGAVIMPPRLKGEWVAMVRDSKVLTLEKREYL 71

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y  I S AI   +    +  ID   I  AT  A+  AVE+L   P   L+D   +P D+P
Sbjct: 72  YCHIVSMAISFGVGVVDNTQIDCLGIAPATRLAMKQAVEHLDCRPDYLLVDYLKLP-DIP 130

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                ++ GD++  SIA ASIIAKV+RDRLM      YP Y    H GY TA H + I +
Sbjct: 131 LPQKGIVDGDALCFSIACASIIAKVSRDRLMCELDATYPGYHLAKHKGYGTALHMECISQ 190

Query: 191 KGPSCIHRLTFRPLRNL 207
           KG S IHR TF PL+++
Sbjct: 191 KGISPIHRRTFAPLKSM 207


>gi|310828460|ref|YP_003960817.1| hypothetical protein ELI_2873 [Eubacterium limosum KIST612]
 gi|308740194|gb|ADO37854.1| hypothetical protein ELI_2873 [Eubacterium limosum KIST612]
          Length = 262

 Score =  137 bits (346), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 80/177 (45%), Positives = 112/177 (63%), Gaps = 3/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + G DEVGRG LAGPVV AA+IL  ++    ++DSKK+S K RE L  +I + A+ ++I 
Sbjct: 83  IGGSDEVGRGPLAGPVVCAAVILPRDSAILHVDDSKKLSAKMREALDVQIRAEALSVAIG 142

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             + + ID  NI +AT  A+  AV  L   P   LID  +I  +   +   ++ GD+   
Sbjct: 143 LRTPEQIDALNILEATKSAMSEAVSQLDPQPDLMLIDALTI--ETQAEVRGIVHGDATCY 200

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SIAAASI+AKV RD+LM   H++YP+YGFD +VGY TA+H   IK+ G + IHR +F
Sbjct: 201 SIAAASIVAKVYRDKLMHAYHEQYPEYGFDRNVGYGTAEHIAAIKKYGLTPIHRRSF 257


>gi|114797072|ref|YP_761434.1| ribonuclease HII [Hyphomonas neptunium ATCC 15444]
 gi|123128500|sp|Q0BYK9|RNH2_HYPNA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|114737246|gb|ABI75371.1| ribonuclease HIII [Hyphomonas neptunium ATCC 15444]
          Length = 207

 Score =  137 bits (346), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 81/195 (41%), Positives = 104/195 (53%), Gaps = 15/195 (7%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISSA 86
           G+DE GRG  AGPV  AA+ILDP     G+ DSKK+S K R+ L   I   A+   ++ A
Sbjct: 9   GVDEAGRGPWAGPVTAAAVILDPAQPIEGLTDSKKLSEKARDRLAPLIRERALAWCVAEA 68

Query: 87  SHQYIDKHNIHKATLDAIYHAV--------------ENLQVIPRSALIDGRSIPEDLPCQ 132
           S + ID  NI +AT  A+  A+              E +       LIDG ++P DLP  
Sbjct: 69  SVEEIDTLNIRQATFLAMRRAILGQSRTDQDRSGQFETVSATAGLILIDGNALPGDLPAP 128

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
           A A+IKGD    +I+AASI+AK  RD  M      YP YGF  H GY TA H   +   G
Sbjct: 129 ARAIIKGDLTEPAISAASILAKTHRDAQMASLCNLYPGYGFSGHKGYGTAAHAAALTRLG 188

Query: 193 PSCIHRLTFRPLRNL 207
           P  +HR +F P+R L
Sbjct: 189 PCPVHRQSFAPVRAL 203


>gi|119713524|gb|ABL97577.1| ribonuclease [uncultured marine bacterium EB0_35D03]
          Length = 191

 Score =  137 bits (346), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 80/190 (42%), Positives = 107/190 (56%), Gaps = 11/190 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           + G+DE GRG L G V+ AA+    N    G+ DSKK++ KKRE  Y +I      S+  
Sbjct: 3   IIGVDEAGRGPLVGSVIAAAVAFPENFYLEGLTDSKKLTEKKRESFYSQIVQKCNWSVGE 62

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQV--------IPRSALIDGRSIPEDLPCQAFAVI 137
           AS   ID+ NI +AT+ A+  AV NLQ+             L+DG   P+   CQ  A++
Sbjct: 63  ASSIEIDQINILQATMLAMKRAVNNLQLELSISDKDDQFKVLVDGNQCPDVGNCQ--AIV 120

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCI 196
           KGD I   I+AAS+IAKVTRDR M+     YP YGF  H GY T +H   + + GP   I
Sbjct: 121 KGDLIEPVISAASVIAKVTRDRQMKELDLNYPGYGFAKHKGYGTREHLDALNKFGPIKGI 180

Query: 197 HRLTFRPLRN 206
           HR +F P++N
Sbjct: 181 HRASFAPIKN 190


>gi|121634067|ref|YP_974312.1| ribonuclease HII [Neisseria meningitidis FAM18]
 gi|166226632|sp|A1KRM4|RNH2_NEIMF RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|120865773|emb|CAM09502.1| ribonuclease HII [Neisseria meningitidis FAM18]
          Length = 194

 Score =  137 bits (346), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 81/184 (44%), Positives = 112/184 (60%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83
            AG+DE GRG L G V  AA+IL +  ++P G+ DSKK+S KKR+ L E I + A+   +
Sbjct: 5   TAGVDEAGRGPLVGSVFAAAVILPEIFDLP-GLTDSKKLSEKKRDALAEMIKNQAVAWHV 63

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           ++A  + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  
Sbjct: 64  AAAGPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKI 123

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           + I+AAS++AK  RD  M    +++P YGFD H GY T +H + +++ G    HR  F P
Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALEKYGVLPEHRRDFAP 183

Query: 204 LRNL 207
           +RNL
Sbjct: 184 VRNL 187


>gi|46398973|gb|AAS92172.1| RNase H ribonuclease [Legionella pneumophila]
 gi|46398975|gb|AAS92173.1| RNase H ribonuclease [Legionella pneumophila]
          Length = 191

 Score =  137 bits (346), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 82/185 (44%), Positives = 115/185 (62%), Gaps = 8/185 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83
           +AG+DEVGRG LAG VV AA+IL     P  G+ DSKK+S K+R  L  +I   A+  + 
Sbjct: 9   MAGVDEVGRGPLAGAVVTAAVILKK---PIDGLTDSKKLSPKQRNLLAVRIKEEALAFAY 65

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSI 142
             A  + ID+ NIH ATL A+  AVE L + P + ++DG   P+ ++PC+A  +++GDS+
Sbjct: 66  GRAEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVVVDGAFTPQLNIPCKA--IVQGDSL 123

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKV RD  M    K YP YGF  H GY T  H++ +   GP  IHR ++ 
Sbjct: 124 IPEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYS 183

Query: 203 PLRNL 207
           P+ +L
Sbjct: 184 PVADL 188


>gi|152999991|ref|YP_001365672.1| ribonuclease HII [Shewanella baltica OS185]
 gi|166226651|sp|A6WLC0|RNH2_SHEB8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|151364609|gb|ABS07609.1| Ribonuclease H [Shewanella baltica OS185]
          Length = 210

 Score =  137 bits (346), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 85/188 (45%), Positives = 114/188 (60%), Gaps = 6/188 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP+    G+NDSKK+S K+RE L+++I   A+   + 
Sbjct: 20  IAGVDEVGRGPLVGDVVTAAVILDPSKPISGLNDSKKLSEKRREALFDEICDKALCYQVG 79

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-----EDLPCQAFAVIKG 139
            AS   ID+ NI  AT+ A+  AV  L + P   L+DG   P           + ++IKG
Sbjct: 80  RASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRSPIFVAHNGAELTSHSIIKG 139

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D +  SI+AASIIAKVTRDR M +    YP YGF  H GYPT  H + I E G    +R 
Sbjct: 140 DGLIASISAASIIAKVTRDREMDVLDAAYPQYGFAKHKGYPTKAHFEAIAEHGVFDQYRK 199

Query: 200 TFRPLRNL 207
           +F+P++ L
Sbjct: 200 SFKPVKAL 207


>gi|120599538|ref|YP_964112.1| ribonuclease HII [Shewanella sp. W3-18-1]
 gi|146292465|ref|YP_001182889.1| ribonuclease HII [Shewanella putrefaciens CN-32]
 gi|166226653|sp|A4Y557|RNH2_SHEPC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166226655|sp|A1RLL3|RNH2_SHESW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|120559631|gb|ABM25558.1| RNase HII [Shewanella sp. W3-18-1]
 gi|145564155|gb|ABP75090.1| RNase HII [Shewanella putrefaciens CN-32]
          Length = 209

 Score =  137 bits (346), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 87/187 (46%), Positives = 114/187 (60%), Gaps = 5/187 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S K+RE L+++I   A+   I 
Sbjct: 20  IAGVDEVGRGPLVGDVVTAAVILDPNQPISGLNDSKKLSEKRREALFDEICEKALCYHIG 79

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP----EDLPCQAFAVIKGD 140
            AS   ID+ NI  AT+ A+  AV  L + P+  L+DG   P          + ++IKGD
Sbjct: 80  RASPAEIDELNILHATMLAMQRAVAGLNLAPKLVLVDGNRSPFFSHNSQSIVSHSIIKGD 139

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
            +  SI+AASIIAKVTRDR M      YP YGF  H GYPT  H + I E G    +R +
Sbjct: 140 GLIASISAASIIAKVTRDREMDALDAAYPQYGFAKHKGYPTKAHFEAIAEHGVFDQYRKS 199

Query: 201 FRPLRNL 207
           F+P++ L
Sbjct: 200 FKPVKAL 206


>gi|329118448|ref|ZP_08247154.1| ribonuclease HII [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465494|gb|EGF11773.1| ribonuclease HII [Neisseria bacilliformis ATCC BAA-1200]
          Length = 198

 Score =  137 bits (345), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 79/182 (43%), Positives = 109/182 (59%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85
           AG+DE GRG LAG V  AA+IL  +    G+ DSKK+S KKR+ L  +I + A+  S++ 
Sbjct: 7   AGVDEAGRGPLAGSVFAAAVILPEHYDLPGLADSKKLSEKKRDALAAQIKAQAVAWSVAE 66

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A    I + NI  A + A+  AVENL V P+  LIDG  IP+ LP  A A++KGD+   +
Sbjct: 67  AGVDEIARLNILHAAMLAMRRAVENLAVPPQRILIDGNRIPDGLPAPAEAIVKGDAKIPA 126

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AK  RD  M     ++P YGF+ H GY T +H   ++  G    HR  F P+R
Sbjct: 127 ISAASILAKTARDAQMYALAARHPQYGFERHKGYGTPEHLAALRRHGALPEHRRGFAPVR 186

Query: 206 NL 207
            +
Sbjct: 187 EI 188


>gi|187917927|ref|YP_001883490.1| ribonuclease HII [Borrelia hermsii DAH]
 gi|238689305|sp|B2S1N3|RNH2_BORHD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|119860775|gb|AAX16570.1| ribonuclease HII [Borrelia hermsii DAH]
          Length = 181

 Score =  137 bits (345), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 79/178 (44%), Positives = 111/178 (62%), Gaps = 1/178 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           + GIDEVGRG + GPV+ AA+I   N N    ++DSKK+   KRE L   I  ++  + +
Sbjct: 2   ICGIDEVGRGCIFGPVLSAAVIFKGNPNFLNELDDSKKLKKAKREYLSSLILENSYYAFA 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S++ IDK NIH A+L A+  A E L +     L+DG+ IP+    +  A+IKGDSI  
Sbjct: 62  EVSNETIDKINIHHASLLAMQIAYEKLDINCDLVLVDGKFIPKIKAKKIQAIIKGDSIIN 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            I AASIIAKV RD+LM   +K YP Y  + + GYPT +H++ IK+ G S +HR +F+
Sbjct: 122 EIKAASIIAKVQRDKLMDEYNKIYPLYALNKNKGYPTKEHKEAIKKHGISNLHRRSFK 179


>gi|332295819|ref|YP_004437742.1| Ribonuclease H [Thermodesulfobium narugense DSM 14796]
 gi|332178922|gb|AEE14611.1| Ribonuclease H [Thermodesulfobium narugense DSM 14796]
          Length = 210

 Score =  137 bits (345), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 79/181 (43%), Positives = 105/181 (58%), Gaps = 1/181 (0%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-I 80
           + +P  G+DEVGRGALAGP+VV A+  D + +  G+ DSK +  ++R EL + I   A  
Sbjct: 18  DFFPSLGMDEVGRGALAGPLVVGAVYFDKDYMIDGLKDSKLLKDQERRELCDIIKRKASY 77

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            SI  A H  IDK NI+ A + A   A+ N+  +P +   DG    +  P +     K D
Sbjct: 78  WSIGWAYHWEIDKLNIYSALVLACKRAILNMNFLPEAIFFDGSLKLKTFPFKHIVFPKAD 137

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
            +  S+AAASIIAKV RD  M    K YPDY FD H GY T  H +V+++KG S IHR T
Sbjct: 138 RLVPSVAAASIIAKVARDDYMINISKYYPDYLFDIHKGYGTKFHLEVLEKKGLSKIHRKT 197

Query: 201 F 201
           F
Sbjct: 198 F 198


>gi|145224747|ref|YP_001135425.1| ribonuclease HII [Mycobacterium gilvum PYR-GCK]
 gi|315445077|ref|YP_004077956.1| RNase HII [Mycobacterium sp. Spyr1]
 gi|189043630|sp|A4TE84|RNH2_MYCGI RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|145217233|gb|ABP46637.1| RNase HII [Mycobacterium gilvum PYR-GCK]
 gi|315263380|gb|ADU00122.1| RNase HII [Mycobacterium sp. Spyr1]
          Length = 253

 Score =  137 bits (345), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 83/202 (41%), Positives = 118/202 (58%), Gaps = 10/202 (4%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREEL 71
           LE+ +    + PVAG+DEVGRGA AGP+VVAA IL PN +     ++DSKK++  +RE L
Sbjct: 20  LESALYRAGLGPVAGVDEVGRGACAGPLVVAACILGPNRLESLSALDDSKKLNESERERL 79

Query: 72  YEKITSSAI----ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           +  I   A+    + I S     +D+  +H A ++ +  AV  L V P   L DG  +P 
Sbjct: 80  FPLIRRYAVAFHVVFIPSVE---VDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVP- 135

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            LP  +  V+ GD+ +  IAAAS++AKV+RDRLM    +++P YGF  H GY T  H   
Sbjct: 136 GLPMPSLPVVGGDAAAACIAAASVLAKVSRDRLMVAMDQEHPGYGFADHKGYSTRAHSAA 195

Query: 188 IKEKGPSCIHRLTFRPLRNLSV 209
           + + GPS  HR +F  +R L V
Sbjct: 196 LNDLGPSTQHRFSFINVRRLVV 217


>gi|17546137|ref|NP_519539.1| ribonuclease HII [Ralstonia solanacearum GMI1000]
 gi|39932439|sp|Q8XZH7|RNH2_RALSO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|17428433|emb|CAD15120.1| probable ribonuclease hII (rnase hII) protein [Ralstonia
           solanacearum GMI1000]
          Length = 236

 Score =  137 bits (345), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 79/186 (42%), Positives = 114/186 (61%), Gaps = 11/186 (5%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISSA 86
           G+DE GRG LAGPV  AA++L+P     G+ DSK ++ KKRE LY++I   A+   ++ A
Sbjct: 31  GVDEAGRGPLAGPVTAAAVVLNPRKPIQGLADSKVLTAKKREALYDEIVEKALAWHVAEA 90

Query: 87  SHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLPCQAFAV---IKGD 140
           + + ID+ NI  AT+ A+  AV+ +    V+P    +DG   P+     AFAV   +KGD
Sbjct: 91  TVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVDGNRCPQ----VAFAVEAIVKGD 146

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           ++  +I+AASI+AKVTRDR +   H  +P YGFD H GY T +H   I+  G +  HR +
Sbjct: 147 ALVPAISAASILAKVTRDRQLAALHIAFPQYGFDVHAGYGTPQHLAAIERHGVTPHHRRS 206

Query: 201 FRPLRN 206
           F P+R 
Sbjct: 207 FAPVRR 212


>gi|269121650|ref|YP_003309827.1| ribonuclease H [Sebaldella termitidis ATCC 33386]
 gi|268615528|gb|ACZ09896.1| Ribonuclease H [Sebaldella termitidis ATCC 33386]
          Length = 197

 Score =  137 bits (345), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 79/177 (44%), Positives = 107/177 (60%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84
           +AG+DE GRG LAGPVV AA+I++        INDSKK++ KKRE+LY  I     + I 
Sbjct: 15  IAGVDEAGRGPLAGPVVAAAVIIEDYFEELEEINDSKKLTEKKREKLYAVIREKRKVGIG 74

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           +A  + IDK NI  AT  A+  A+E +       L+DG     +   +   +IKGD  SL
Sbjct: 75  TADEKEIDKINILNATFLAMRRALEQIDNYD-IVLVDGNHKIREYSGRQEEIIKGDGRSL 133

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SIAAASI+AKV RD +M+   ++YPDY F+ H GY T  H++++   G   IHR TF
Sbjct: 134 SIAAASIVAKVYRDNIMKDFARQYPDYRFEKHKGYGTKLHRELLHAHGACKIHRKTF 190


>gi|51246658|ref|YP_066542.1| ribonuclease HII [Desulfotalea psychrophila LSv54]
 gi|81641223|sp|Q6AJE5|RNH2_DESPS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|50877695|emb|CAG37535.1| probable ribonuclease HII [Desulfotalea psychrophila LSv54]
          Length = 225

 Score =  137 bits (345), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 91/202 (45%), Positives = 128/202 (63%), Gaps = 7/202 (3%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           + +F LE  +       +AG DEVGRG LAGPV+ AA+IL  +       DSK +SHKKR
Sbjct: 13  QDNFFLERSLHNLGYDIIAGTDEVGRGPLAGPVIAAAVILPADCDHHLFQDSKILSHKKR 72

Query: 69  EELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQV---IPRSALIDGR- 123
             L++ +T   A I I + S + ID+ NI +A+L A+  A+E+L      P   L+DG+ 
Sbjct: 73  VHLFQLLTEIDAFIGIGTVSEKIIDEINILQASLLAMKLAIEDLASNCSRPSFLLVDGKF 132

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +P DL     A+IKG+S S SIAAASI+AKVTRDR M+  H +YP YGF+++ GYPT K
Sbjct: 133 KVPIDLA--QVALIKGESKSASIAAASIVAKVTRDRYMQDLHSQYPQYGFNTNSGYPTKK 190

Query: 184 HQQVIKEKGPSCIHRLTFRPLR 205
           H++ I E G +C HR +F+ ++
Sbjct: 191 HREAIGEFGITCYHRRSFKGVK 212


>gi|46398965|gb|AAS92168.1| RNase H ribonuclease [Legionella pneumophila]
 gi|46398967|gb|AAS92169.1| RNase H ribonuclease [Legionella pneumophila]
          Length = 191

 Score =  137 bits (345), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 82/185 (44%), Positives = 115/185 (62%), Gaps = 8/185 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83
           +AG+DEVGRG LAG VV AA+IL     P  G+ DSKK+S K+R  L  +I   A+  + 
Sbjct: 9   MAGVDEVGRGPLAGAVVTAAVILKK---PIDGLTDSKKLSSKQRNLLAIRIKEEALAFAY 65

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSI 142
             A  + ID+ NIH ATL A+  AVE L + P + ++DG   P+ ++PC+A  +++GDS+
Sbjct: 66  GRAEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVVVDGAFTPQLNVPCKA--IVQGDSL 123

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKV RD  M    K YP YGF  H GY T  H++ +   GP  IHR ++ 
Sbjct: 124 IPEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYS 183

Query: 203 PLRNL 207
           P+ +L
Sbjct: 184 PVADL 188


>gi|227510328|ref|ZP_03940377.1| ribonuclease HII [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227189980|gb|EEI70047.1| ribonuclease HII [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 255

 Score =  137 bits (345), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 81/194 (41%), Positives = 116/194 (59%), Gaps = 8/194 (4%)

Query: 20  EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E++ W      VAG+DEVGRG LAGPVV  A IL  +     +NDSK+++ + R  L  +
Sbjct: 63  ERSFWHRGVNYVAGVDEVGRGPLAGPVVACATILPRDFDLIQVNDSKQLTPEIRARLAPQ 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI I +    ++ ID+ NI++AT  A+  AV NL   P   ++D   I   +P   
Sbjct: 123 IKREAISIGLGLVDNKGIDRLNIYEATRVAMKQAVNNLTQQPDEIIVDAMQIA--VPIHQ 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGD+ S+S++AASI+AKV RD LM    ++YP+Y F  + GY TAKH   +K+ G 
Sbjct: 181 TRLIKGDAKSISVSAASIVAKVYRDTLMDQYAQQYPEYDFKHNAGYGTAKHLSALKKYGA 240

Query: 194 SCIHRLTFRPLRNL 207
           + IHR TF P++N 
Sbjct: 241 TPIHRKTFAPVKNF 254


>gi|58578839|ref|YP_197051.1| ribonuclease HII [Ehrlichia ruminantium str. Welgevonden]
 gi|58616897|ref|YP_196096.1| ribonuclease HII [Ehrlichia ruminantium str. Gardel]
 gi|75356600|sp|Q5FFD4|RNH2_EHRRG RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|58416509|emb|CAI27622.1| Ribonuclease HII [Ehrlichia ruminantium str. Gardel]
 gi|58417465|emb|CAI26669.1| Ribonuclease HII [Ehrlichia ruminantium str. Welgevonden]
          Length = 220

 Score =  137 bits (345), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 83/187 (44%), Positives = 112/187 (59%), Gaps = 5/187 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKREELYEKITSSAIISI 83
           + G+DEVG G+LAGPVV AA+      N     INDSKK++ K R+++Y KI +    SI
Sbjct: 29  IVGVDEVGYGSLAGPVVSAAVFFPNYNNETTQDINDSKKLTPKTRQKIYNKIITRVKWSI 88

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQ--VIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
             A    ID++NI  AT  A+  A+  L   +     +IDG  IP ++P  A A+I GD+
Sbjct: 89  GFAHIFEIDEYNILNATHIAMKRALTGLNAHIDIDYVIIDGNKIP-NIPWNAQAIIGGDT 147

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           IS SIAAASIIAKVTRDRLM   H +YP Y ++ + GY T  H   + + G +  HR TF
Sbjct: 148 ISTSIAAASIIAKVTRDRLMETLHIQYPQYNWNKNKGYGTKDHITSLYKYGKTIHHRNTF 207

Query: 202 RPLRNLS 208
            P+  +S
Sbjct: 208 TPISKIS 214


>gi|319425767|gb|ADV53841.1| Ribonuclease H [Shewanella putrefaciens 200]
          Length = 209

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/187 (46%), Positives = 114/187 (60%), Gaps = 5/187 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S K+RE L+++I   A+   I 
Sbjct: 20  IAGVDEVGRGPLVGDVVTAAVILDPNQSISGLNDSKKLSEKRREALFDEICEKALCYHIG 79

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP----EDLPCQAFAVIKGD 140
            AS   ID+ NI  AT+ A+  AV  L + P+  L+DG   P          + ++IKGD
Sbjct: 80  RASPAEIDELNILHATMLAMQRAVAGLNLAPKLVLVDGNRSPVFSHNSQSIVSHSIIKGD 139

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
            +  SI+AASIIAKVTRDR M      YP YGF  H GYPT  H + I E G    +R +
Sbjct: 140 GLIASISAASIIAKVTRDREMDALDAVYPQYGFAKHKGYPTKAHFEAIAEHGVFDQYRKS 199

Query: 201 FRPLRNL 207
           F+P++ L
Sbjct: 200 FKPVKAL 206


>gi|57238907|ref|YP_180043.1| ribonuclease HII [Ehrlichia ruminantium str. Welgevonden]
 gi|81637940|sp|Q5HC01|RNH2_EHRRW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|57160986|emb|CAH57892.1| ribonuclease HII [Ehrlichia ruminantium str. Welgevonden]
          Length = 212

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/187 (44%), Positives = 112/187 (59%), Gaps = 5/187 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKREELYEKITSSAIISI 83
           + G+DEVG G+LAGPVV AA+      N     INDSKK++ K R+++Y KI +    SI
Sbjct: 21  IVGVDEVGYGSLAGPVVSAAVFFPNYNNETTQDINDSKKLTPKTRQKIYNKIITRVKWSI 80

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQ--VIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
             A    ID++NI  AT  A+  A+  L   +     +IDG  IP ++P  A A+I GD+
Sbjct: 81  GFAHIFEIDEYNILNATHIAMKRALTGLNAHIDIDYVIIDGNKIP-NIPWNAQAIIGGDT 139

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           IS SIAAASIIAKVTRDRLM   H +YP Y ++ + GY T  H   + + G +  HR TF
Sbjct: 140 ISTSIAAASIIAKVTRDRLMETLHIQYPQYNWNKNKGYGTKDHITSLYKYGKTIHHRNTF 199

Query: 202 RPLRNLS 208
            P+  +S
Sbjct: 200 TPISKIS 206


>gi|329121228|ref|ZP_08249855.1| ribonuclease HII [Dialister micraerophilus DSM 19965]
 gi|327470162|gb|EGF15625.1| ribonuclease HII [Dialister micraerophilus DSM 19965]
          Length = 264

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/197 (43%), Positives = 130/197 (65%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           + +E+   ++ +  V GIDEVGRG LAGPV VAA+IL P+     +NDSKK+S +KRE +
Sbjct: 56  YAVESEFYKQGIQYVVGIDEVGRGPLAGPVTVAAVILKPHWFIENLNDSKKVSKEKREII 115

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            +K+   A+ ISI+  S + ID  NI++AT+ A+Y AV+ L++ P++ ++D   +   +P
Sbjct: 116 SKKVHEEALAISITDLSVEEIDTLNIYQATMLAMYQAVKKLEIKPQAVIVDAMPLHFQVP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
           C++   I GDS S S+AAASI+AKV RD +M    K YP Y F+ + GY T KH + I E
Sbjct: 176 CKSL--IHGDSKSASVAAASIVAKVHRDHIMDEYAKIYPGYDFEDNKGYGTKKHMEAIYE 233

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR ++ P++++
Sbjct: 234 LGITPIHRKSYEPVKSI 250


>gi|118586886|ref|ZP_01544320.1| ribonuclease HII [Oenococcus oeni ATCC BAA-1163]
 gi|118432718|gb|EAV39450.1| ribonuclease HII [Oenococcus oeni ATCC BAA-1163]
          Length = 209

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/200 (40%), Positives = 121/200 (60%), Gaps = 3/200 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           R  F+ E  + ++    +AGIDEVGRG +AGPVV  + IL  N       DSK+ + ++R
Sbjct: 11  RIRFKFENELNDEGYQIIAGIDEVGRGCVAGPVVACSCILPANFNVSETYDSKRFNKRQR 70

Query: 69  EELYEKIT-SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
             L E+I  +S + +   AS   ID+ NI+++   A+  +V NL  +P + LID  ++  
Sbjct: 71  FLLEEEIKKTSCLFAFGEASVTEIDRINIYQSARLAMKRSVMNLLQMPDALLIDAMAV-- 128

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           DL  +   +I GD +S SIAAASI+AK  RDR+M    +KYP+YGF+ +VGY T++ ++ 
Sbjct: 129 DLNLKQLKIIHGDQLSNSIAAASILAKCHRDRIMIKMAEKYPEYGFERNVGYLTSEAKKA 188

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           + E G + IHR TF P+  L
Sbjct: 189 LLEYGITPIHRKTFAPISKL 208


>gi|7240593|gb|AAB33869.2| RNase HII [Caulobacter vibrioides]
          Length = 192

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/179 (46%), Positives = 107/179 (59%), Gaps = 3/179 (1%)

Query: 29  IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSAS 87
           +++ GR   AGPV   A+ILDP+ IP G+NDSKK+S K R  L E+I   AI   +  AS
Sbjct: 3   VEKNGRAPWAGPVSAGAVILDPDRIPKGLNDSKKLSAKARAALEEEIKDVAISWCVGLAS 62

Query: 88  HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147
            + I + NI  A   A+  AVE L V P  AL+DG +    LPC    VIKGDS+S SIA
Sbjct: 63  IEEIAQLNILHAAGLAMRRAVEGLAVTPAFALVDG-NYAFKLPCPVKTVIKGDSLSCSIA 121

Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           AASI+AK  RDR+M  A   YP Y F  H GY    H + ++  GPS IHRL + P++ 
Sbjct: 122 AASILAKEARDRIMIEADALYPGY-FAGHKGYHAKVHVEGLRRLGPSPIHRLGWAPVKT 179


>gi|154497939|ref|ZP_02036317.1| hypothetical protein BACCAP_01919 [Bacteroides capillosus ATCC
           29799]
 gi|150272929|gb|EDN00086.1| hypothetical protein BACCAP_01919 [Bacteroides capillosus ATCC
           29799]
          Length = 210

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/191 (41%), Positives = 114/191 (59%), Gaps = 2/191 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +E+E   +E+    + G DE G G LAGPV   A+IL    I  G+NDSKK++ K+R+ L
Sbjct: 10  WEIERSCKERGYQLICGADEAGAGPLAGPVYAGAVILPEGLILEGLNDSKKVTPKRRDRL 69

Query: 72  YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +E+I   AI  +++S   + ID  NI  A + A+  A++ L+  P  ALIDG    + + 
Sbjct: 70  FEEIQEKAIAWAVASVDEKEIDAINILNARMKAMEMAIQALKPAPDYALIDGNR-DKGIT 128

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                V+KGD  S +IAAASI+AKV+RDR M    K YP+Y F+ H GY T  H +++ +
Sbjct: 129 IAHETVVKGDGRSANIAAASILAKVSRDRYMEEMAKLYPEYEFERHKGYGTKLHFELLMK 188

Query: 191 KGPSCIHRLTF 201
            GP  IHR +F
Sbjct: 189 YGPCPIHRRSF 199


>gi|300024712|ref|YP_003757323.1| ribonuclease H [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526533|gb|ADJ25002.1| Ribonuclease H [Hyphomicrobium denitrificans ATCC 51888]
          Length = 274

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/192 (42%), Positives = 111/192 (57%), Gaps = 7/192 (3%)

Query: 20  EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E ++W      VAG+DE G   LAGPV  AA+I  P      ++DSKK+    R+ L  +
Sbjct: 64  ETSLWKTGVQFVAGVDEAGMSPLAGPVSAAAVIFAPGTRIADVDDSKKLDAATRDRLAIE 123

Query: 75  ITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I ++AI  S+  A  + ID+ NI+ A L A+  AVE L   P+  LID R I +DL    
Sbjct: 124 IKATAIAWSVGFAEVEEIDRINIYWAGLLAMRRAVEGLATQPQHVLIDARRI-KDLAIPQ 182

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             ++KGD+ SL+IAAASI+AK  RD LMR     +P YGF  H GYP  +H   + + G 
Sbjct: 183 QPIVKGDAKSLTIAAASILAKTARDALMRKLDGDHPGYGFSKHKGYPVREHLAALTKLGA 242

Query: 194 SCIHRLTFRPLR 205
           S +HR +F P+R
Sbjct: 243 SPVHRRSFAPVR 254


>gi|300780923|ref|ZP_07090777.1| ribonuclease H [Corynebacterium genitalium ATCC 33030]
 gi|300532630|gb|EFK53691.1| ribonuclease H [Corynebacterium genitalium ATCC 33030]
          Length = 215

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 109/193 (56%), Gaps = 10/193 (5%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREELY 72
           E  + +  + PVAGIDE GRGA  GPV +AA +L    IP   G+ DSKK++  KR  LY
Sbjct: 11  EVALSKAGLGPVAGIDEAGRGACFGPVTIAACVLPDKPIPALDGLTDSKKLTPAKRASLY 70

Query: 73  EKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           + I +S+    ++ I +A    +D+  IH A LD    AV  L + P   L+D   +P  
Sbjct: 71  DAILTSSDAHCVVHIPAAE---VDRRGIHNANLDGARLAVAGLGLAPGFTLVDAFRVP-G 126

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L      +I GD  +  IAAAS++AKV+RDRL+    + +PDYG +SH GY TA H   +
Sbjct: 127 LTMPQLPIIGGDYTARCIAAASVLAKVSRDRLITKMAETFPDYGLESHKGYGTAAHMDAV 186

Query: 189 KEKGPSCIHRLTF 201
           +  G S  HR T+
Sbjct: 187 RRHGASAEHRYTY 199


>gi|119355888|ref|YP_910532.1| ribonuclease H [Chlorobium phaeobacteroides DSM 266]
 gi|166225181|sp|A1BCI1|RNH2_CHLPD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|119353237|gb|ABL64108.1| Ribonuclease H [Chlorobium phaeobacteroides DSM 266]
          Length = 205

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/193 (40%), Positives = 114/193 (59%), Gaps = 10/193 (5%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHKKREE 70
           E ++WP    ++GIDE GRG LAGPVV AA+I      P       ++DSKK+S   RE+
Sbjct: 6   EYSLWPTLSLISGIDEAGRGPLAGPVVAAAVIFPRWFRPRHAGLDKLDDSKKLSPNLREQ 65

Query: 71  LYEKI-TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L   I T +A  +++      ID+ NI +AT+ A+ +AV +L   P   L+DG     + 
Sbjct: 66  LAPTIKTFAAFWAVAVIEPDIIDRINIFQATMQAMNNAVASLHQPPELILVDGNRFMPNA 125

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     ++KGD+   SIAAAS++AK  RD +M    K+YP+YGF+ H GYPTA H + I+
Sbjct: 126 PIPYETIVKGDAKVFSIAAASVLAKTHRDAIMTAYGKEYPEYGFERHFGYPTASHIKAIE 185

Query: 190 EKGPSCIHRLTFR 202
             G + +HR +FR
Sbjct: 186 TFGRTPVHRKSFR 198


>gi|150021773|ref|YP_001307127.1| ribonuclease HII [Thermosipho melanesiensis BI429]
 gi|189043672|sp|A6LP91|RNH2_THEM4 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|149794294|gb|ABR31742.1| Ribonuclease H [Thermosipho melanesiensis BI429]
          Length = 216

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/184 (41%), Positives = 114/184 (61%), Gaps = 6/184 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           VAG+DE GRG L GPVV +A++L      +GI DSKK++ K+REEL+ +I  ++   I  
Sbjct: 3   VAGVDEAGRGPLFGPVVASAVVLKKE--IYGITDSKKLTLKQREELFMEIIRNSYFGIGF 60

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPR--SALIDGRSIPEDLPCQAFAVIKGDSIS 143
           AS   IDK NI  AT  A+  A+  L+   R    L+DG+++  D   +   ++KGD + 
Sbjct: 61  ASSSEIDKLNILHATELAMNRALAMLERKIRFDMVLVDGKNLKLDYKSKC--IVKGDVLI 118

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASIIAKV RD++M    KK+ +Y  + H GYPT  H ++I++ G +  HRLTF+P
Sbjct: 119 KEISAASIIAKVVRDKIMTFYSKKFSNYALEKHKGYPTKDHIKLIEKYGLTPEHRLTFKP 178

Query: 204 LRNL 207
           +  +
Sbjct: 179 ITKM 182


>gi|148358904|ref|YP_001250111.1| ribonuclease HII [Legionella pneumophila str. Corby]
 gi|296106952|ref|YP_003618652.1| ribonuclease HII [Legionella pneumophila 2300/99 Alcoy]
 gi|166226623|sp|A5IBL5|RNH2_LEGPC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|148280677|gb|ABQ54765.1| ribonuclease HII [Legionella pneumophila str. Corby]
 gi|295648853|gb|ADG24700.1| ribonuclease HII [Legionella pneumophila 2300/99 Alcoy]
          Length = 191

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/185 (44%), Positives = 115/185 (62%), Gaps = 8/185 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83
           +AG+DEVGRG LAG VV AA+IL     P  G+ DSKK+S K+R  L  +I   A+  + 
Sbjct: 9   MAGVDEVGRGPLAGAVVTAAVILKK---PIDGLTDSKKLSPKQRNLLAIRIKEEALAFAY 65

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSI 142
             A  + ID+ NIH ATL A+  AVE L + P + ++DG   P+ ++PC+A  +++GDS+
Sbjct: 66  GRAEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVVVDGAFTPQLNIPCKA--IVQGDSL 123

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKV RD  M    K YP YGF  H GY T  H++ +   GP  IHR ++ 
Sbjct: 124 VPEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCRIHRRSYS 183

Query: 203 PLRNL 207
           P+ +L
Sbjct: 184 PVADL 188


>gi|261419405|ref|YP_003253087.1| ribonuclease HII [Geobacillus sp. Y412MC61]
 gi|319766220|ref|YP_004131721.1| ribonuclease H [Geobacillus sp. Y412MC52]
 gi|261375862|gb|ACX78605.1| Ribonuclease H [Geobacillus sp. Y412MC61]
 gi|317111086|gb|ADU93578.1| Ribonuclease H [Geobacillus sp. Y412MC52]
          Length = 260

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 119/183 (65%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AGIDE GRG LAGPVV AA+IL  +    G++DSK+++ +KRE L+ +I + A+ I I 
Sbjct: 73  IAGIDEAGRGPLAGPVVAAAVILPKDAYLPGLDDSKRLTPEKREALFAQIEACAVAIGIG 132

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S   ID+ NI++AT  A+  AV  L   P   L+D  ++P  LP Q   +IKGD+ S 
Sbjct: 133 IVSAAEIDERNIYEATRQAMAKAVNALSPPPEHLLVDAMAVPCPLPQQR--LIKGDANSA 190

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAAS+IAKVTRDR M+   ++YP YGF  H+GY T +H + I+  G +  HR +F P+
Sbjct: 191 SIAAASVIAKVTRDRWMKELDRRYPQYGFARHMGYGTPEHFEAIRRYGVTPEHRRSFAPV 250

Query: 205 RNL 207
           R +
Sbjct: 251 REV 253


>gi|46398977|gb|AAS92174.1| RNase H ribonuclease [Legionella pneumophila]
          Length = 191

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/185 (44%), Positives = 115/185 (62%), Gaps = 8/185 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83
           +AG+DEVGRG LAG VV AA+IL     P  G+ DSKK+S K+R  L  +I   A+  + 
Sbjct: 9   MAGVDEVGRGPLAGAVVTAAVILKK---PIDGLTDSKKLSPKQRNLLAIRIKEEALAFAY 65

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSI 142
             A  + ID+ NIH ATL A+  AVE L + P + ++DG   P+ ++PC+A  +++GDS+
Sbjct: 66  GRAEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVVVDGAFTPQLNIPCKA--IVQGDSL 123

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKV RD  M    K YP YGF  H GY T  H++ +   GP  IHR ++ 
Sbjct: 124 IPEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYS 183

Query: 203 PLRNL 207
           P+ +L
Sbjct: 184 PVADL 188


>gi|297530620|ref|YP_003671895.1| ribonuclease H [Geobacillus sp. C56-T3]
 gi|297253872|gb|ADI27318.1| Ribonuclease H [Geobacillus sp. C56-T3]
          Length = 260

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 119/183 (65%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AGIDE GRG LAGPVV AA+IL  +    G++DSK+++ +KRE L+ +I + A+ I I 
Sbjct: 73  IAGIDEAGRGPLAGPVVAAAVILPKDAYLPGLDDSKRLTPEKREALFAQIEACAVAIGIG 132

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S   ID+ NI++AT  A+  AV  L   P   L+D  ++P  LP Q   +IKGD+ S 
Sbjct: 133 IVSAAEIDERNIYEATRQAMAKAVNALSPPPEHLLVDAMAVPCPLPQQR--LIKGDANSA 190

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAAS+IAKVTRDR M+   ++YP YGF  H+GY T +H + I+  G +  HR +F P+
Sbjct: 191 SIAAASVIAKVTRDRWMKELDRRYPQYGFARHMGYGTPEHFEAIRRYGVTPEHRRSFAPV 250

Query: 205 RNL 207
           R +
Sbjct: 251 REV 253


>gi|210622543|ref|ZP_03293236.1| hypothetical protein CLOHIR_01184 [Clostridium hiranonis DSM 13275]
 gi|210154178|gb|EEA85184.1| hypothetical protein CLOHIR_01184 [Clostridium hiranonis DSM 13275]
          Length = 256

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/189 (46%), Positives = 117/189 (61%), Gaps = 4/189 (2%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
           EK    +AG+DE GRG LAGPVV A ++L       GINDSKK+S  KR EL++ I   A
Sbjct: 69  EKGYTYIAGVDEAGRGPLAGPVVAAVVVLKQGTKIPGINDSKKLSEDKRNELFDIIKEEA 128

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           +   I    ++ ID++NI  AT  A+  A+  L+  P   L D   IP D+  +  ++IK
Sbjct: 129 LDYGIGIVGNEEIDEYNILNATYMAMRKALNCLKKQPDYILADAVHIP-DVDIEQNSIIK 187

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD+ S+SIAAASI+AKVTRD LM    + YP+YGF  H GY TA+H + I E G + IHR
Sbjct: 188 GDAKSISIAAASILAKVTRDSLMYQYDEIYPEYGFAHHKGYGTAEHYKAIDENGITPIHR 247

Query: 199 LTFRPLRNL 207
            +F  L+N+
Sbjct: 248 KSF--LKNV 254


>gi|56419740|ref|YP_147058.1| ribonuclease HII [Geobacillus kaustophilus HTA426]
 gi|81347633|sp|Q5L0P0|RNH2_GEOKA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|56379582|dbj|BAD75490.1| ribonuclease HII [Geobacillus kaustophilus HTA426]
          Length = 260

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 119/183 (65%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AGIDE GRG LAGPVV AA+IL  +    G++DSK+++ +KRE L+ +I + A+ I I 
Sbjct: 73  IAGIDEAGRGPLAGPVVAAAVILPKDAYLPGLDDSKRLTPEKREALFAQIEACAVAIGIG 132

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S   ID+ NI++AT  A+  AV  L   P   L+D  ++P  LP Q   +IKGD+ S 
Sbjct: 133 IVSAAEIDERNIYEATRQAMAKAVNALSPPPEHLLVDAMAVPCPLPQQR--LIKGDANSA 190

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAAS+IAKVTRDR M+   ++YP YGF  H+GY T +H + I+  G +  HR +F P+
Sbjct: 191 SIAAASVIAKVTRDRWMKELDRRYPQYGFARHMGYGTPEHFEAIRRYGVTPEHRRSFAPV 250

Query: 205 RNL 207
           R +
Sbjct: 251 REV 253


>gi|217964584|ref|YP_002350262.1| ribonuclease HII (RNase HII) [Listeria monocytogenes HCC23]
 gi|254807979|sp|B8DHN2|RNH2_LISMH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|217333854|gb|ACK39648.1| ribonuclease HII (RNase HII) [Listeria monocytogenes HCC23]
 gi|307570852|emb|CAR84031.1| rnhB [Listeria monocytogenes L99]
          Length = 261

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/204 (44%), Positives = 128/204 (62%), Gaps = 5/204 (2%)

Query: 4   NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           N + E   +E +    ++    +AG+DEVGRG LAGPVV AA+IL  +    GINDSK++
Sbjct: 53  NKLEEMKQYETDLF--QQGYKYIAGVDEVGRGPLAGPVVAAAVILPDDFSVVGINDSKQL 110

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           S  KR+ LYE I + AI + +    H  ID+ NI++AT  A+  A++ LQ  P   LID 
Sbjct: 111 SEAKRDALYETIQTEAIAVGVGIIEHNVIDQVNIYEATKLAMRAALDQLQPEPDFVLID- 169

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
            ++P        ++IKGD+ S+SIAAASIIAKVTRDRLM++  +KYP Y F +++GY T 
Sbjct: 170 -AMPLKYTEAELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGTK 228

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRN 206
           KH   +   G   IHR++F P++ 
Sbjct: 229 KHLHGLDTIGICPIHRISFAPVKE 252


>gi|15895039|ref|NP_348388.1| ribonuclease HII [Clostridium acetobutylicum ATCC 824]
 gi|39932446|sp|Q97I90|RNH2_CLOAB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|15024732|gb|AAK79728.1|AE007685_4 Ribonuclease HII [Clostridium acetobutylicum ATCC 824]
 gi|325509176|gb|ADZ20812.1| ribonuclease HII [Clostridium acetobutylicum EA 2018]
          Length = 254

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/188 (43%), Positives = 117/188 (62%), Gaps = 9/188 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN-----NIPFGINDSKKISHKKREELYEKITSSAI 80
           +AG+DEVGRG LAGP+V AA+IL+ N     ++  GINDSKK+S KKR+EL E I   A+
Sbjct: 69  IAGVDEVGRGPLAGPIVGAAVILELNVEKDLDLILGINDSKKLSSKKRQELSEIIKEKAL 128

Query: 81  I-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
              I+S  +  IDK  I     +    A+  L+ +P   + DG ++ + +  +   ++KG
Sbjct: 129 AWEIASLDNNEIDKKGISWCNNEIFKIAISKLKKVPELVISDGYAV-KGIGIKNHYIVKG 187

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D+ S SIA ASIIAKV RD LM    K Y +YGF+S+VGY +  H   IK+ G + IHR+
Sbjct: 188 DAQSASIACASIIAKVYRDNLMGEYAKSYSEYGFESNVGYGSKDHIDAIKKFGTTPIHRM 247

Query: 200 TFRPLRNL 207
           +F  L+N+
Sbjct: 248 SF--LKNI 253


>gi|113970962|ref|YP_734755.1| ribonuclease HII [Shewanella sp. MR-4]
 gi|123029487|sp|Q0HGW9|RNH2_SHESM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|113885646|gb|ABI39698.1| RNase HII [Shewanella sp. MR-4]
          Length = 209

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/187 (45%), Positives = 113/187 (60%), Gaps = 5/187 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDPN    G+NDSKK++ K+RE L+++I   A+   + 
Sbjct: 20  VAGVDEVGRGPLVGDVVTAAVILDPNRPIAGLNDSKKLTEKRREALFDEICEKALSYHVG 79

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP----EDLPCQAFAVIKGD 140
            A+   ID+ NI  AT+ A+  AV  L   P   L+DG   P    + L   + +++KGD
Sbjct: 80  RATPSEIDELNILHATMLAMQRAVAGLARTPELVLVDGNRSPAFTHQGLSLTSHSIVKGD 139

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
            +  SI+AASIIAKVTRDR M      YP YGF  H GYPT  H   I E G    +R +
Sbjct: 140 GLIASISAASIIAKVTRDREMDALDAAYPQYGFAKHKGYPTKAHFDAIAEHGVFDQYRKS 199

Query: 201 FRPLRNL 207
           F+P++ L
Sbjct: 200 FKPVKAL 206


>gi|333029420|ref|ZP_08457481.1| Ribonuclease H [Bacteroides coprosuis DSM 18011]
 gi|332740017|gb|EGJ70499.1| Ribonuclease H [Bacteroides coprosuis DSM 18011]
          Length = 199

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/181 (43%), Positives = 111/181 (61%), Gaps = 1/181 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL  +     +NDSK++S KKR EL   I + A+   +  
Sbjct: 13  AGCDEAGRGCLAGPVFAAAVILPSDFENNLLNDSKQLSEKKRYELRVIIENEALACGVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + IDK NI  A+  A++ A++ L+V P   LIDG         +   ++KGD+  LS
Sbjct: 73  VSVEEIDKINILNASFLAMHRAIDCLKVRPEHLLIDGNRFNPYDGIKHTTIVKGDATFLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           IAAASI+AK  RD  M   H KYP+Y ++ + GYPT KH++ I++ G + +HR TFR L+
Sbjct: 133 IAAASILAKTYRDDYMLAQHNKYPNYDWNHNKGYPTKKHREAIEKYGITPLHRHTFRLLK 192

Query: 206 N 206
           +
Sbjct: 193 D 193


>gi|52841603|ref|YP_095402.1| ribonuclease HII [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|81377550|sp|Q5ZVR7|RNH2_LEGPH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|46398969|gb|AAS92170.1| RNase H ribonuclease [Legionella pneumophila]
 gi|46398971|gb|AAS92171.1| RNase H ribonuclease [Legionella pneumophila]
 gi|52628714|gb|AAU27455.1| ribonuclease HII [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 191

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/185 (44%), Positives = 115/185 (62%), Gaps = 8/185 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD-PNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
           +AG+DEVGRG LAG VV AA+IL  P +   G+ DSKK+S K+R  L  +I   A+  + 
Sbjct: 9   MAGVDEVGRGPLAGAVVTAAVILKKPID---GLTDSKKLSPKQRNLLAIRIKEEALAFAY 65

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSI 142
             A  + ID+ NIH ATL A+  AVE L + P +  +DG   P+ ++PC+A  +++GDS+
Sbjct: 66  GRAEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVFVDGAFTPQLNIPCKA--IVQGDSL 123

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKV RD  M    K YP YGF  H GY T  H++ +   GP  IHR ++ 
Sbjct: 124 IPEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYS 183

Query: 203 PLRNL 207
           P+ +L
Sbjct: 184 PVADL 188


>gi|269303000|gb|ACZ33100.1| ribonuclease HII [Chlamydophila pneumoniae LPCoLN]
          Length = 214

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/184 (45%), Positives = 117/184 (63%), Gaps = 4/184 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS--SAIISI 83
           VAGIDE GRG LAGPVV +A IL    +  G+NDSKK+S K+R ++ + +         I
Sbjct: 29  VAGIDEAGRGPLAGPVVASACILPKGKVFPGVNDSKKLSPKQRAQVRDALMQDPEVCFGI 88

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
              S + ID+ NI +AT +A+  A+ +L + P   L+DG  +P D+PC+   +I+GD+ S
Sbjct: 89  GVISVERIDQVNILEATKEAMLQAISSLPISPDILLVDGLYLPHDIPCKK--IIQGDAKS 146

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SIAAASI+AK  RD LM   H+ YP+YGFD H GY T+ H + I+  GPS  HR +F P
Sbjct: 147 ASIAAASILAKEHRDDLMLQLHRLYPEYGFDRHKGYGTSLHVEAIRRYGPSPCHRKSFSP 206

Query: 204 LRNL 207
           ++ +
Sbjct: 207 IKQM 210


>gi|313206271|ref|YP_004045448.1| ribonuclease h [Riemerella anatipestifer DSM 15868]
 gi|312445587|gb|ADQ81942.1| Ribonuclease H [Riemerella anatipestifer DSM 15868]
 gi|325336287|gb|ADZ12561.1| Ribonuclease HII [Riemerella anatipestifer RA-GD]
          Length = 194

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/177 (43%), Positives = 109/177 (61%), Gaps = 1/177 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG L GPVV AA+ILD N     INDSKK++ K R EL   I   A+  +I+ 
Sbjct: 14  AGCDEAGRGCLCGPVVAAAVILDENFEQNLINDSKKLNFKTRNELDLYIKDYALDYAIAE 73

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
               +ID+HNI  A++ A++ A++ L + P   L+DG             +IKGDS  LS
Sbjct: 74  LPPSFIDEHNILNASIHAMHLALDKLTIRPELILVDGNRFKPYPFTPHECIIKGDSKVLS 133

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           IAAASI+AK  RD +M   H++YP+YG++ + GY T +H++ + + GP+  HR +FR
Sbjct: 134 IAAASILAKNYRDHVMIKLHEEYPEYGWNKNFGYATKQHREALNKLGPTIHHRKSFR 190


>gi|254465727|ref|ZP_05079138.1| ribonuclease HII [Rhodobacterales bacterium Y4I]
 gi|206686635|gb|EDZ47117.1| ribonuclease HII [Rhodobacterales bacterium Y4I]
          Length = 180

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/178 (47%), Positives = 119/178 (66%), Gaps = 4/178 (2%)

Query: 32  VGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYI 91
           +GRG LAGPV  AA++LD   IP G+NDSKK+S KKRE L   I S A  +I+ A+ + I
Sbjct: 1   MGRGPLAGPVTAAAVVLDAAAIPDGLNDSKKLSLKKREALEGAILSCAQTAIAHATVEEI 60

Query: 92  DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--PCQAFAVIKGDSISLSIAAA 149
           D  NI +A+  A+  AV  L   P   LIDG  IP+ L  PC+A  V+KGD+ SLSIAAA
Sbjct: 61  DSLNILRASHLAMERAVAALDPAPDYLLIDGNLIPKGLLLPCEA--VVKGDAKSLSIAAA 118

Query: 150 SIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           SIIAK+ RDR+M    +++P YG++ + GYP+ +H++ + + G +  HR +F+P+ N+
Sbjct: 119 SIIAKLARDRIMVDLAQQFPGYGWEKNAGYPSKQHREALVQLGVTPHHRRSFKPVHNI 176


>gi|54297282|ref|YP_123651.1| ribonuclease HII [Legionella pneumophila str. Paris]
 gi|81370660|sp|Q5X5J3|RNH2_LEGPA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|46398979|gb|AAS92175.1| RNase H ribonuclease [Legionella pneumophila]
 gi|46398981|gb|AAS92176.1| RNase H ribonuclease [Legionella pneumophila]
 gi|46398983|gb|AAS92177.1| RNase H ribonuclease [Legionella pneumophila]
 gi|46398985|gb|AAS92178.1| RNase H ribonuclease [Legionella pneumophila]
 gi|53751067|emb|CAH12478.1| hypothetical protein lpp1327 [Legionella pneumophila str. Paris]
          Length = 191

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/185 (44%), Positives = 115/185 (62%), Gaps = 8/185 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83
           +AG+DEVGRG LAG VV AA+IL     P  G+ DSKK+S K+R  L  +I   A+  + 
Sbjct: 9   MAGVDEVGRGPLAGAVVTAAVILKK---PIDGLTDSKKLSPKQRNLLAIRIKEEALAFAY 65

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSI 142
             A  + ID+ NIH ATL A+  AVE L + P + ++DG   P+ ++PC+A  +++GDS+
Sbjct: 66  GRAEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVVVDGAFTPQLNIPCKA--IVQGDSL 123

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKV RD  M    K YP YGF  H GY T  H++ +   GP  IHR ++ 
Sbjct: 124 IPEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYS 183

Query: 203 PLRNL 207
           P+ +L
Sbjct: 184 PVADL 188


>gi|114048186|ref|YP_738736.1| ribonuclease HII [Shewanella sp. MR-7]
 gi|123131228|sp|Q0HT76|RNH2_SHESR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|113889628|gb|ABI43679.1| RNase HII [Shewanella sp. MR-7]
          Length = 209

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/187 (46%), Positives = 114/187 (60%), Gaps = 5/187 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDPN    G+NDSKK++ K+RE L+++I   A+   + 
Sbjct: 20  VAGVDEVGRGPLVGDVVTAAVILDPNRPIAGLNDSKKLTEKRREALFDEICEKALSFHVG 79

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAF---AVIKGD 140
            AS   ID+ NI  AT+ A+  AV  L + P   L+DG   P  +   QA    +++KGD
Sbjct: 80  RASPAEIDELNILHATMLAMQRAVAGLSLTPELVLVDGNRSPAFNHAGQALTSHSIVKGD 139

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
            +  SI+AASIIAKVTRDR M      YP YGF  H GYPT  H   I E G    +R +
Sbjct: 140 GLIASISAASIIAKVTRDREMDALDAAYPQYGFAKHKGYPTKAHFDAIAEHGVFDQYRKS 199

Query: 201 FRPLRNL 207
           F+P++ L
Sbjct: 200 FKPVKAL 206


>gi|15618043|ref|NP_224327.1| ribonuclease HII [Chlamydophila pneumoniae CWL029]
 gi|15835655|ref|NP_300179.1| ribonuclease HII [Chlamydophila pneumoniae J138]
 gi|16752925|ref|NP_445196.1| ribonuclease HII [Chlamydophila pneumoniae AR39]
 gi|33241455|ref|NP_876396.1| ribonuclease HII [Chlamydophila pneumoniae TW-183]
 gi|7227930|sp|Q9Z962|RNH2_CHLPN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|4376382|gb|AAD18272.1| Ribonuclease HII [Chlamydophila pneumoniae CWL029]
 gi|8163472|gb|AAF73691.1| ribonuclease HII [Chlamydophila pneumoniae AR39]
 gi|8978493|dbj|BAA98330.1| ribonuclease HII [Chlamydophila pneumoniae J138]
 gi|33235963|gb|AAP98053.1| ribonuclease H II [Chlamydophila pneumoniae TW-183]
          Length = 214

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/184 (45%), Positives = 117/184 (63%), Gaps = 4/184 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS--SAIISI 83
           VAGIDE GRG LAGPVV +A IL    +  G+NDSKK+S K+R ++ + +         I
Sbjct: 29  VAGIDEAGRGPLAGPVVASACILPKGKVFPGVNDSKKLSPKQRAQVRDALMQDPEVCFGI 88

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
              S + ID+ NI +AT +A+  A+ +L + P   L+DG  +P D+PC+   +I+GD+ S
Sbjct: 89  GVISVERIDQVNILEATKEAMLQAISSLPISPDILLVDGLYLPHDIPCKK--IIQGDAKS 146

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SIAAASI+AK  RD LM   H+ YP+YGFD H GY T+ H + I+  GPS  HR +F P
Sbjct: 147 ASIAAASILAKEHRDDLMLQLHRLYPEYGFDRHKGYGTSLHVEAIRRYGPSPCHRKSFSP 206

Query: 204 LRNL 207
           ++ +
Sbjct: 207 IKQM 210


>gi|203287517|ref|YP_002222532.1| ribonuclease H [Borrelia recurrentis A1]
 gi|238690580|sp|B5RQM7|RNH2_BORRA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|201084737|gb|ACH94311.1| ribonuclease H [Borrelia recurrentis A1]
          Length = 181

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/178 (44%), Positives = 108/178 (60%), Gaps = 1/178 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           + GIDEVGRG + GPV+ AA+I     N    ++DSKK++  KRE L   I  +A  + +
Sbjct: 2   ICGIDEVGRGCIFGPVLSAAVIFKTKPNFLNELDDSKKLTKTKREYLSSLILENAYYAFA 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S++ IDK NIH A+L A+  A + L +     L+DG+ IP+    Q  A+IKGDS+  
Sbjct: 62  DISNEIIDKINIHNASLLAMQIAYQKLNIECNLVLVDGKFIPKIQAKQIRAIIKGDSMID 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            I AASIIAKV RD+LM    K YP YG   + GYPT +H+  IK+ G   +HR +FR
Sbjct: 122 EIKAASIIAKVQRDKLMVEYDKIYPLYGLKKNKGYPTKEHKDAIKKHGILSLHRKSFR 179


>gi|255319657|ref|ZP_05360866.1| ribonuclease HII [Acinetobacter radioresistens SK82]
 gi|262378546|ref|ZP_06071703.1| ribonuclease HII [Acinetobacter radioresistens SH164]
 gi|255303274|gb|EET82482.1| ribonuclease HII [Acinetobacter radioresistens SK82]
 gi|262299831|gb|EEY87743.1| ribonuclease HII [Acinetobacter radioresistens SH164]
          Length = 191

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/183 (44%), Positives = 113/183 (61%), Gaps = 1/183 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DE GRG L G VV AA+ILDP     G+NDSKK++ KKRE+L+ +I   A+   I+
Sbjct: 3   IAGVDEAGRGPLVGAVVAAAVILDPARPIEGLNDSKKLTEKKREKLFVEIQEKALAWYIA 62

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID+ NI +A+L A+  AVE L + P   L+DG   P  L     AV+ GD++  
Sbjct: 63  EASATEIDEINILQASLLAMRRAVEGLSIQPDKVLVDGNKEPAGLQMSCEAVVGGDALYQ 122

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RDR M +  ++YP YGF  H GYPT  H + I   G    HR ++ P+
Sbjct: 123 EISAASILAKVARDRQMVLLDQRYPHYGFAKHKGYPTKAHFEAIGIHGVIDEHRRSYAPV 182

Query: 205 RNL 207
           + +
Sbjct: 183 KKV 185


>gi|163791099|ref|ZP_02185519.1| ribonuclease HII [Carnobacterium sp. AT7]
 gi|159873655|gb|EDP67739.1| ribonuclease HII [Carnobacterium sp. AT7]
          Length = 257

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/197 (47%), Positives = 127/197 (64%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            ++E    E+    +AGIDEVGRG LAGPVV AA++L  +    GINDSK++S  KRE L
Sbjct: 61  LQIERYFWEQGTQYIAGIDEVGRGPLAGPVVAAAVVLPKDFDVLGINDSKQLSSAKREAL 120

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +E+I  +A+ I I    H  IDK NI++AT  A+  A++ L V P   LID   +P  +P
Sbjct: 121 FEQIQEAAVAIGIGVKDHHIIDKVNIYEATKLAMIEAIQQLPVQPEQLLIDAMHLPVSIP 180

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            ++F  IKGD+ S+SIAAASIIAKVTRDR+M      YP YGF  + GY T  H + +++
Sbjct: 181 QESF--IKGDAKSISIAAASIIAKVTRDRMMADYDDLYPGYGFAKNAGYGTKVHLEGLEK 238

Query: 191 KGPSCIHRLTFRPLRNL 207
           +G   IHR TF P++N+
Sbjct: 239 QGACPIHRKTFAPVKNV 255


>gi|242373537|ref|ZP_04819111.1| ribonuclease HII [Staphylococcus epidermidis M23864:W1]
 gi|242348900|gb|EES40502.1| ribonuclease HII [Staphylococcus epidermidis M23864:W1]
          Length = 256

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/183 (42%), Positives = 112/183 (61%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG LAGPVV  A+IL+ ++   G+NDSKK+  K+R  L   + +  +  +  
Sbjct: 74  ICGIDEVGRGPLAGPVVACAVILNKDHHYLGLNDSKKVPAKQRVALNNDLKAGVLSYAYG 133

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID+ NI++AT  A+  A+  L   P   LID   +  D+P    ++IKGD+ S+
Sbjct: 134 IASSEEIDELNIYRATQVAMQRAIAQLDEQPTHLLIDAMKLDNDIP--QTSIIKGDAKSV 191

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASI+AK  RD  M+     +PDYGF+ +VGY T +H + I   G    HR +F P+
Sbjct: 192 SIAAASIMAKEYRDDYMKALANHFPDYGFEKNVGYGTKQHLEAIDTYGVINEHRKSFEPI 251

Query: 205 RNL 207
           ++L
Sbjct: 252 KSL 254


>gi|307152014|ref|YP_003887398.1| Ribonuclease H [Cyanothece sp. PCC 7822]
 gi|306982242|gb|ADN14123.1| Ribonuclease H [Cyanothece sp. PCC 7822]
          Length = 215

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/210 (40%), Positives = 129/210 (61%), Gaps = 7/210 (3%)

Query: 7   PERPHFELEAMVREKNMWP-VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSK 61
           P  P F++  +   K+    +AG+DEVGRGAL GPV   A+I+  + +P     G+ DSK
Sbjct: 4   PILPTFDISLLPEVKSQETLIAGVDEVGRGALFGPVAAGAVIIPVSALPQLTALGVKDSK 63

Query: 62  KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           ++S KKR EL  +I + A+   +S A+   ID+ NI +A+L A+Y AV  L+V     L+
Sbjct: 64  QLSPKKRSELAAQIKAMALDFHVSFATVMDIDRINILQASLLAMYRAVAKLKVEAAVCLV 123

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG+    +L  +   +++GD  S  IAAASI+AKV RD+L+    +KYP Y   ++ GY 
Sbjct: 124 DGKQPIPNLAIRQENIVRGDERSPVIAAASILAKVWRDQLIVRLARKYPHYDLIANKGYG 183

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPL-RNLSV 209
           T +H++ + + GPS  HRL+FRP  ++LS+
Sbjct: 184 TIRHREALLKYGPSPQHRLSFRPCQKSLSI 213


>gi|88607606|ref|YP_505581.1| ribonuclease HII [Anaplasma phagocytophilum HZ]
 gi|123494580|sp|Q2GJ70|RNH2_ANAPZ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|88598669|gb|ABD44139.1| ribonuclease HII [Anaplasma phagocytophilum HZ]
          Length = 210

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/200 (40%), Positives = 121/200 (60%), Gaps = 6/200 (3%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKK 67
           P+F  E      +   V G+DEVG G++AGPVV AA+ +   N+     I DSK ++ KK
Sbjct: 2   PNFSYEDSFSHGSNAIVVGVDEVGYGSIAGPVVAAAVYIPDRNVECIPNIKDSKLLTPKK 61

Query: 68  REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-ALIDG-RSI 125
           R+ LY+++ S  +     AS   I++HNI  A+  A+  A+ENL +      L+DG R +
Sbjct: 62  RDALYKELLSHTVCGTGLASIDEIEEHNILVASHMAMRRALENLNLQRIDLVLVDGSREL 121

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
               P ++  +I GD +S+SIAAASI+AKVTRD +MR  H +YP+Y ++ + GY TA H 
Sbjct: 122 KSQWPSKS--IINGDELSISIAAASIVAKVTRDNMMRELHDQYPEYHWNKNCGYGTAAHI 179

Query: 186 QVIKEKGPSCIHRLTFRPLR 205
             +K+ G + +HR TF P++
Sbjct: 180 LALKQHGATPLHRKTFAPVK 199


>gi|297584021|ref|YP_003699801.1| ribonuclease H [Bacillus selenitireducens MLS10]
 gi|297142478|gb|ADH99235.1| Ribonuclease H [Bacillus selenitireducens MLS10]
          Length = 258

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/186 (44%), Positives = 115/186 (61%), Gaps = 9/186 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84
           +AG+DEVGRG LAGPV  A +IL  +    G+ DSKK+S  KR     +I   AI +   
Sbjct: 71  IAGVDEVGRGPLAGPVTAACVILPESPDLKGLTDSKKLSEAKRHFYAAEIQKVAIAAETG 130

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA----LIDGRSIPEDLPCQAFAVIKGD 140
            AS + ID+ NI++A+  A+  AV  +Q   ++A    LID  ++P DLP ++  +IKGD
Sbjct: 131 EASPEEIDRLNIYEASKLAMRRAVAAVQ--QKTAIDFLLIDAMTLPIDLPQES--LIKGD 186

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           + SLSIAAAS+IAKV RD  M+   + +P+YG  SH+GY T +H   + E GP   HR +
Sbjct: 187 ARSLSIAAASVIAKVERDNQMKELDRAFPEYGLASHMGYGTREHLAALDEHGPQFFHRKS 246

Query: 201 FRPLRN 206
           F P+R 
Sbjct: 247 FSPVRE 252


>gi|328794509|ref|XP_003252082.1| PREDICTED: ribonuclease HII-like, partial [Apis mellifera]
          Length = 169

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/167 (48%), Positives = 101/167 (60%), Gaps = 2/167 (1%)

Query: 42  VVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKAT 100
           V AA+ILDPNN   G+ DSKK+S KKRE L+E I   A+  +I+ AS   ID+ NI  AT
Sbjct: 1   VTAAVILDPNNPIEGLADSKKLSEKKREYLFEVIKEKALAWNIARASVSEIDQLNILHAT 60

Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160
           + A+  AV  L + P   L+DG   P D    A AV+KGDS+   I AASI+AKVTRDR 
Sbjct: 61  MLAMQRAVAGLSIKPNLVLVDGNRAP-DFGIAAQAVVKGDSLVQEIGAASILAKVTRDRE 119

Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           M    K YP YG   H GYPT  H   I E G + I+R +F P++ L
Sbjct: 120 MAELDKIYPQYGLSKHKGYPTQAHLAAIIEHGVNDIYRKSFAPVKRL 166


>gi|239948099|ref|ZP_04699852.1| ribonuclease HII [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239922375|gb|EER22399.1| ribonuclease HII [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 193

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/177 (50%), Positives = 113/177 (63%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           VAGIDE GRG LAGPVV +A+I+D  NI  GI DSKK+S KKRE LYE+ITS+ + S + 
Sbjct: 17  VAGIDEAGRGPLAGPVVASAVIIDNANIITGIKDSKKLSKKKRELLYEQITSNYVWSAAI 76

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            SH  ID+ NI +AT  A   A  NL   P   L+DG     D   +  +++ GD++SLS
Sbjct: 77  ISHTEIDEINILEATKKACSIAAANLTTKPEIVLVDGNMQFNDE--RFVSIVNGDNLSLS 134

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           IAAASIIAKVTRDRLM     ++P Y +  + GY T +H + I   G S  HR +FR
Sbjct: 135 IAAASIIAKVTRDRLMLDLSAEFPQYLWHKNSGYGTKEHIEAINTHGLSPYHRRSFR 191


>gi|257867805|ref|ZP_05647458.1| ribonuclease HII [Enterococcus casseliflavus EC30]
 gi|257874132|ref|ZP_05653785.1| ribonuclease HII [Enterococcus casseliflavus EC10]
 gi|257876697|ref|ZP_05656350.1| ribonuclease HII [Enterococcus casseliflavus EC20]
 gi|257801888|gb|EEV30791.1| ribonuclease HII [Enterococcus casseliflavus EC30]
 gi|257808296|gb|EEV37118.1| ribonuclease HII [Enterococcus casseliflavus EC10]
 gi|257810863|gb|EEV39683.1| ribonuclease HII [Enterococcus casseliflavus EC20]
          Length = 254

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/200 (46%), Positives = 128/200 (64%), Gaps = 5/200 (2%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E   FE EA   ++    +AG+DEVGRG LAGPVV AA+IL       G+NDSK++S KK
Sbjct: 57  EMMRFENEAF--QQGARFIAGLDEVGRGPLAGPVVSAAVILPKECQILGLNDSKQLSAKK 114

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           REEL+ +I + A+ + I   S + ID+ NI++A+  A+  A+ +L V P   LID  +I 
Sbjct: 115 REELFIEIQNKAVAVGIGVVSPEEIDRINIYQASRLAMKEALIDLAVKPEYLLIDAMTID 174

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            ++P Q+  +IKGD+ S+SIAAASIIAKV RD LM+  H+ YP YGFD + GY T  H +
Sbjct: 175 TEIPQQS--LIKGDARSISIAAASIIAKVYRDNLMKDFHEVYPFYGFDQNAGYGTKVHLE 232

Query: 187 VIKEKGPSCIHRLTFRPLRN 206
            +   G   IHR TF P++ 
Sbjct: 233 GLAAHGICPIHRKTFAPVKQ 252


>gi|117921242|ref|YP_870434.1| ribonuclease HII [Shewanella sp. ANA-3]
 gi|166226654|sp|A0KZ09|RNH2_SHESA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|117613574|gb|ABK49028.1| RNase HII [Shewanella sp. ANA-3]
          Length = 209

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/187 (46%), Positives = 113/187 (60%), Gaps = 5/187 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S K+RE L+++I   A+   + 
Sbjct: 20  VAGVDEVGRGPLVGDVVTAAVILDPNRPIAGLNDSKKLSEKRREALFDEICEKALSYHVG 79

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP----EDLPCQAFAVIKGD 140
            AS   ID+ NI  AT+ A+  AV  L   P   L+DG   P    + L   + +++KGD
Sbjct: 80  RASPLEIDELNILHATMLAMQRAVAGLARAPELVLVDGNRSPAFTHQGLTLISHSIVKGD 139

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
            +  SI+AASIIAKVTRDR M      YP YGF  H GYPT  H   I E G    +R +
Sbjct: 140 GLIASISAASIIAKVTRDREMDALDAAYPQYGFAKHKGYPTKAHFDAIAEHGVFDQYRKS 199

Query: 201 FRPLRNL 207
           F+P++ L
Sbjct: 200 FKPVKAL 206


>gi|83319843|ref|YP_424513.1| ribonuclease HII, putative [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|97182957|sp|Q2SRV0|RNH2_MYCCT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|83283729|gb|ABC01661.1| ribonuclease HII, putative [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 207

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/202 (38%), Positives = 122/202 (60%), Gaps = 2/202 (0%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
            R  F+ + +  + N+  ++G DE GRG LAGP+VVA++IL P+     I DSKK++ K 
Sbjct: 3   NRKSFD-DQIKLDHNITYLSGSDEAGRGCLAGPLVVASVILKPDYFNPLIKDSKKLNPKT 61

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R+ L+++I  + +   I   S + +D+ N  +A+L      + NL++ P  ALIDG    
Sbjct: 62  RQVLFDEIIKNCLDYQIMIISSKQVDELNPLQASLLGFKTTISNLKITPDLALIDGNQNI 121

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
                +  ++IKGD  S SIA +SI+AKVTRD+++    + YP+YGF SH GY T KH  
Sbjct: 122 NLENIKTLSIIKGDDNSFSIACSSILAKVTRDKILDQYDQIYPNYGFKSHKGYCTKKHLL 181

Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208
            I++ G   IHR +++P++ +S
Sbjct: 182 AIQKYGVLDIHRKSYKPIKKIS 203


>gi|319790514|ref|YP_004152147.1| Ribonuclease H [Thermovibrio ammonificans HB-1]
 gi|317115016|gb|ADU97506.1| Ribonuclease H [Thermovibrio ammonificans HB-1]
          Length = 242

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/191 (41%), Positives = 113/191 (59%), Gaps = 7/191 (3%)

Query: 20  EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           EK++W      VAG+DE GRG LAGPVV AA++  P+  PF   DSKK++ ++RE L+ +
Sbjct: 10  EKSLWSKGYRFVAGVDEAGRGPLAGPVVAAAVVFSPHVKPFLFRDSKKLTKRERERLFRE 69

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I  SA  + +  A    ID+ NI++ATL A   A+E L + P   + D   IP+    + 
Sbjct: 70  ILKSAYAVGVGFADSTEIDELNIYRATLLAAERAIEELPLKPDYLITDYLKIPK-FAGRL 128

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            A+ KGD  S S A AS++AKV RD +M   H  +P+YGF+ H GYPT  H   ++  G 
Sbjct: 129 IAIPKGDERSFSCACASVVAKVVRDFIMEELHTLFPNYGFNKHKGYPTKTHYGAVRSFGL 188

Query: 194 SCIHRLTFRPL 204
           S +HR +F  L
Sbjct: 189 SPVHRRSFGKL 199


>gi|229586446|ref|YP_002844947.1| ribonuclease HII [Rickettsia africae ESF-5]
 gi|259494072|sp|C3PMP4|RNH2_RICAE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|228021496|gb|ACP53204.1| Ribonuclease HII [Rickettsia africae ESF-5]
          Length = 193

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/177 (50%), Positives = 115/177 (64%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           VAGIDE GRG LAGPVV +A+I+D  NI  GI DSKK+S KKRE LYE+ITS+ + + + 
Sbjct: 17  VAGIDEAGRGPLAGPVVASAVIVDNANIITGIKDSKKLSKKKRELLYEQITSNYVWATAI 76

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            SH  ID  NI +AT  A   AV NL + P   L+DG    +D   +  ++I GD++SLS
Sbjct: 77  ISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKDE--RFVSIINGDNLSLS 134

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           IAAASI+AKVTRDRLM     ++P Y +  + GY T +H + I   G S  HR +FR
Sbjct: 135 IAAASIVAKVTRDRLMLDLSAEFPQYLWHKNSGYGTKEHIEAINIYGLSPYHRRSFR 191


>gi|229824250|ref|ZP_04450319.1| hypothetical protein GCWU000282_01554 [Catonella morbi ATCC 51271]
 gi|229786604|gb|EEP22718.1| hypothetical protein GCWU000282_01554 [Catonella morbi ATCC 51271]
          Length = 262

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/196 (42%), Positives = 122/196 (62%), Gaps = 5/196 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREELY 72
           E    E     +AG+DEVGRG LAGPVVVAA++L  D  ++  G+ DSK++SH KR E  
Sbjct: 63  EMAAYEAGYQVIAGLDEVGRGPLAGPVVVAAVVLPRDCQHLLVGVTDSKQLSHAKRLEFA 122

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I   A+ + I +     ID+ NI++AT   +  AVE L+V P   L+D  +I  DLP 
Sbjct: 123 RQIREVALDLKIVAIPPAIIDRENIYQATRQGMKAAVEALRVKPDYLLLDAITIDSDLPQ 182

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           ++   +KGD  SLSIAAASI+AKV RD LM    + YP++GF+ ++GY T +H   +   
Sbjct: 183 ESL--VKGDQRSLSIAAASIVAKVYRDELMVQYSQTYPEFGFERNMGYGTKEHLVALDRV 240

Query: 192 GPSCIHRLTFRPLRNL 207
           G + IHR +F P++++
Sbjct: 241 GYTPIHRRSFEPVKSM 256


>gi|42560965|ref|NP_975416.1| ribonuclease H II [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|81829391|sp|Q6MTH8|RNH2_MYCMS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|42492462|emb|CAE77058.1| ribonuclease H II [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|301321294|gb|ADK69937.1| ribonuclease HII [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 207

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/188 (40%), Positives = 115/188 (61%), Gaps = 1/188 (0%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
           N+  ++G DE GRG LAGP+VVA++IL P+     I DSKK++ K R+ LY++I  + + 
Sbjct: 16  NITYLSGSDEAGRGCLAGPLVVASVILKPDYFNPLIKDSKKLNPKTRQVLYDEIIKNCLD 75

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             I   S + +D+ N  +A+L      + NL++ P  ALIDG    E    +   +IKGD
Sbjct: 76  YQIIIISSKQVDELNPLQASLLGFKTTINNLKITPDLALIDGNQNIELTNIKTLQIIKGD 135

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
             S SIA +SI+AKVTRD+++    + YP+Y F SH GY T KH   I++ G   IHR +
Sbjct: 136 DKSFSIACSSILAKVTRDKILDEYDQIYPNYDFKSHKGYCTKKHLLAIQKYGILDIHRKS 195

Query: 201 FRPLRNLS 208
           ++P++ +S
Sbjct: 196 YKPIKKIS 203


>gi|15892187|ref|NP_359901.1| ribonuclease HII [Rickettsia conorii str. Malish 7]
 gi|20139552|sp|Q92J05|RNH2_RICCN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|15619319|gb|AAL02802.1| ribonuclease HII [Rickettsia conorii str. Malish 7]
          Length = 193

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/177 (50%), Positives = 115/177 (64%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           VAGIDE GRG LAGPVV +A+I+D  NI  GI DSKK+S KKRE LYE+ITS+ + + + 
Sbjct: 17  VAGIDEAGRGPLAGPVVASAVIVDNANIITGIKDSKKLSKKKRELLYEQITSNYVWATAI 76

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            SH  ID  NI +AT  A   AV NL + P   L+DG    +D   +  ++I GD++SLS
Sbjct: 77  ISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKDE--RFVSIINGDNLSLS 134

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           IAAASI+AKVTRDRLM     ++P Y +  + GY T +H + I   G S  HR +FR
Sbjct: 135 IAAASIVAKVTRDRLMLDLSAEFPQYLWHKNSGYGTKEHIEAINIHGLSPYHRRSFR 191


>gi|329942999|ref|ZP_08291773.1| ribonuclease HII family protein [Chlamydophila psittaci Cal10]
 gi|332287581|ref|YP_004422482.1| ribonuclease HII [Chlamydophila psittaci 6BC]
 gi|313848155|emb|CBY17156.1| ribonuclease HII [Chlamydophila psittaci RD1]
 gi|325506940|gb|ADZ18578.1| ribonuclease HII [Chlamydophila psittaci 6BC]
 gi|328814546|gb|EGF84536.1| ribonuclease HII family protein [Chlamydophila psittaci Cal10]
 gi|328914832|gb|AEB55665.1| ribonuclease HII [Chlamydophila psittaci 6BC]
          Length = 212

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/196 (44%), Positives = 121/196 (61%), Gaps = 4/196 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  V  +    +AGIDEVGRG LAGPVV AA IL    +  G+NDSKK++ K+R ++ +
Sbjct: 18  FEEEVFREGFSLIAGIDEVGRGPLAGPVVAAACILPRGKVFAGVNDSKKLTPKERGKIRD 77

Query: 74  KITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            + +   +   +   S + ID+ NI +AT +A+  A+ NL + P   L+DG  +P  +PC
Sbjct: 78  ILVNDPEVYYGLGVVSVERIDEINILEATKEAMAVAIANLPIHPDFLLVDGLHLPHKIPC 137

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   +I+GDS S SIAAASIIAK  RD LMR  H+ YP+YGFD H GY TA H   +K  
Sbjct: 138 KK--IIQGDSKSASIAAASIIAKEYRDDLMRELHQLYPNYGFDKHKGYGTAAHLAALKAF 195

Query: 192 GPSCIHRLTFRPLRNL 207
           GP   HR +F P+R +
Sbjct: 196 GPCDCHRKSFAPVRQV 211


>gi|78189946|ref|YP_380284.1| ribonuclease HII [Chlorobium chlorochromatii CaD3]
 gi|97182370|sp|Q3AP34|RNH2_CHLCH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|78172145|gb|ABB29241.1| RNase HII [Chlorobium chlorochromatii CaD3]
          Length = 206

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/199 (43%), Positives = 119/199 (59%), Gaps = 11/199 (5%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGI-NDSKKISHKKREE 70
           E+ +W     + GIDEVGRG LAGPVV AA++      P      + NDSKK+S K+RE 
Sbjct: 6   EEPLWQHYEFICGIDEVGRGPLAGPVVAAAVVFPRWFQPTEALLTLLNDSKKLSAKERES 65

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L   I + A+  +++   H  ID+ NI +AT+ A+ +AV+ L +IP   L+DG     DL
Sbjct: 66  LVPAIKAQALHWALAEVQHNVIDEVNILQATMLAMNNAVKALPIIPSLLLVDGNRFTTDL 125

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                 ++KGDS   SIAAAS++AKV RD LM +    YP YGF+ H GYPT+ H + I+
Sbjct: 126 AIPYKTIVKGDSHVFSIAAASVLAKVHRDALMCVYATHYPHYGFERHAGYPTSAHIEAIR 185

Query: 190 EKGPSCIHRLTFRPLRNLS 208
           + G   IHR +F+ LR L 
Sbjct: 186 QHGRCPIHRQSFK-LRQLG 203


>gi|253999106|ref|YP_003051169.1| Ribonuclease H [Methylovorus sp. SIP3-4]
 gi|253985785|gb|ACT50642.1| Ribonuclease H [Methylovorus sp. SIP3-4]
          Length = 188

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/183 (42%), Positives = 114/183 (62%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           + G+DE GRG LAG V  AA+IL+P     G+ DSKK+S KKR+ L  +I   A+  +I+
Sbjct: 6   ICGVDEAGRGPLAGAVYAAAVILNPARPIPGLADSKKLSEKKRDALTLEIKQHALAWAIA 65

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            ++ + ID  NI +A+L A+  AVE L + P   L+DG   PE +   A A++ GDS   
Sbjct: 66  HSTVEEIDSINILQASLLAMRRAVEQLGIQPHKLLVDGLHCPE-VSMVAEAIVDGDSKVE 124

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AK  RD+ +    ++YP YGF  H GYPTA H  ++ E G S +HR ++ P+
Sbjct: 125 AISAASILAKTARDKELYALDQQYPHYGFAKHKGYPTAFHMAMLIEHGVSPVHRRSYAPV 184

Query: 205 RNL 207
           + L
Sbjct: 185 KKL 187


>gi|240124405|ref|ZP_04737361.1| ribonuclease HII [Neisseria gonorrhoeae PID332]
          Length = 194

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/184 (43%), Positives = 109/184 (59%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83
            AG+DE GRG L G V  AA+IL +  ++P G+ DSKK+S KKR+ L E I   A+   +
Sbjct: 5   TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKEQAVAWHV 63

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           ++++ + I   NI  AT+ A+  AV  L   P    IDG  IPE L   A AV+KGDS  
Sbjct: 64  AASTPEEIASLNILHATMLAMKRAVYGLAARPEKIFIDGNRIPEHLGIPAEAVVKGDSKI 123

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           + I+AAS++AK  RD  M    ++ P YGFD H GY T +H + +K+ G    HR  F P
Sbjct: 124 IEISAASVLAKTARDAEMYALAQRRPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183

Query: 204 LRNL 207
           +RNL
Sbjct: 184 VRNL 187


>gi|59802108|ref|YP_208820.1| hypothetical protein NGO1789 [Neisseria gonorrhoeae FA 1090]
 gi|239997979|ref|ZP_04717903.1| ribonuclease HII [Neisseria gonorrhoeae 35/02]
 gi|240015043|ref|ZP_04721956.1| ribonuclease HII [Neisseria gonorrhoeae DGI18]
 gi|240017491|ref|ZP_04724031.1| ribonuclease HII [Neisseria gonorrhoeae FA6140]
 gi|240081632|ref|ZP_04726175.1| ribonuclease HII [Neisseria gonorrhoeae FA19]
 gi|240113913|ref|ZP_04728403.1| ribonuclease HII [Neisseria gonorrhoeae MS11]
 gi|240116645|ref|ZP_04730707.1| ribonuclease HII [Neisseria gonorrhoeae PID18]
 gi|240118868|ref|ZP_04732930.1| ribonuclease HII [Neisseria gonorrhoeae PID1]
 gi|240122111|ref|ZP_04735073.1| ribonuclease HII [Neisseria gonorrhoeae PID24-1]
 gi|240124723|ref|ZP_04737609.1| ribonuclease HII [Neisseria gonorrhoeae SK-92-679]
 gi|240129082|ref|ZP_04741743.1| ribonuclease HII [Neisseria gonorrhoeae SK-93-1035]
 gi|260439594|ref|ZP_05793410.1| ribonuclease HII [Neisseria gonorrhoeae DGI2]
 gi|73917827|sp|Q5F5X9|RNH2_NEIG1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|59719003|gb|AAW90408.1| putative ribonuclease HII [Neisseria gonorrhoeae FA 1090]
          Length = 194

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/184 (43%), Positives = 109/184 (59%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83
            AG+DE GRG L G V  AA+IL +  ++P G+ DSKK+S KKR+ L E I   A+   +
Sbjct: 5   TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKEQAVAWHV 63

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           ++++ + I   NI  AT+ A+  AV  L   P    IDG  IPE L   A AV+KGDS  
Sbjct: 64  AASTPEEIASLNILHATMLAMKRAVYGLAARPEKIFIDGNRIPEHLGIPAEAVVKGDSKI 123

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           + I+AAS++AK  RD  M    ++ P YGFD H GY T +H + +K+ G    HR  F P
Sbjct: 124 IEISAASVLAKTARDAEMYALAQRRPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183

Query: 204 LRNL 207
           +RNL
Sbjct: 184 VRNL 187


>gi|293398148|ref|ZP_06642353.1| ribonuclease HII [Neisseria gonorrhoeae F62]
 gi|291611411|gb|EFF40481.1| ribonuclease HII [Neisseria gonorrhoeae F62]
          Length = 212

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/184 (43%), Positives = 109/184 (59%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83
            AG+DE GRG L G V  AA+IL +  ++P G+ DSKK+S KKR+ L E I   A+   +
Sbjct: 23  TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKEQAVAWHV 81

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           ++++ + I   NI  AT+ A+  AV  L   P    IDG  IPE L   A AV+KGDS  
Sbjct: 82  AASTPEEIASLNILHATMLAMKRAVYGLAARPEKIFIDGNRIPEHLGIPAEAVVKGDSKI 141

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           + I+AAS++AK  RD  M    ++ P YGFD H GY T +H + +K+ G    HR  F P
Sbjct: 142 IEISAASVLAKTARDAEMYALAQRRPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 201

Query: 204 LRNL 207
           +RNL
Sbjct: 202 VRNL 205


>gi|194099971|ref|YP_002003110.1| ribonuclease HII [Neisseria gonorrhoeae NCCP11945]
 gi|254494667|ref|ZP_05107838.1| ribonuclease HII [Neisseria gonorrhoeae 1291]
 gi|268593829|ref|ZP_06127996.1| ribonuclease HII [Neisseria gonorrhoeae 35/02]
 gi|268597728|ref|ZP_06131895.1| ribonuclease HII [Neisseria gonorrhoeae FA19]
 gi|268599975|ref|ZP_06134142.1| ribonuclease HII [Neisseria gonorrhoeae MS11]
 gi|268602313|ref|ZP_06136480.1| ribonuclease HII [Neisseria gonorrhoeae PID18]
 gi|268604575|ref|ZP_06138742.1| ribonuclease HII [Neisseria gonorrhoeae PID1]
 gi|268683300|ref|ZP_06150162.1| ribonuclease HII [Neisseria gonorrhoeae SK-92-679]
 gi|268687461|ref|ZP_06154323.1| ribonuclease HII [Neisseria gonorrhoeae SK-93-1035]
 gi|291042833|ref|ZP_06568574.1| ribonuclease HII [Neisseria gonorrhoeae DGI2]
 gi|193935261|gb|ACF31085.1| RnhB [Neisseria gonorrhoeae NCCP11945]
 gi|226513707|gb|EEH63052.1| ribonuclease HII [Neisseria gonorrhoeae 1291]
 gi|268547218|gb|EEZ42636.1| ribonuclease HII [Neisseria gonorrhoeae 35/02]
 gi|268551516|gb|EEZ46535.1| ribonuclease HII [Neisseria gonorrhoeae FA19]
 gi|268584106|gb|EEZ48782.1| ribonuclease HII [Neisseria gonorrhoeae MS11]
 gi|268586444|gb|EEZ51120.1| ribonuclease HII [Neisseria gonorrhoeae PID18]
 gi|268588706|gb|EEZ53382.1| ribonuclease HII [Neisseria gonorrhoeae PID1]
 gi|268623584|gb|EEZ55984.1| ribonuclease HII [Neisseria gonorrhoeae SK-92-679]
 gi|268627745|gb|EEZ60145.1| ribonuclease HII [Neisseria gonorrhoeae SK-93-1035]
 gi|291013267|gb|EFE05233.1| ribonuclease HII [Neisseria gonorrhoeae DGI2]
 gi|317165422|gb|ADV08963.1| ribonuclease HII [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 212

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/184 (43%), Positives = 109/184 (59%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83
            AG+DE GRG L G V  AA+IL +  ++P G+ DSKK+S KKR+ L E I   A+   +
Sbjct: 23  TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKEQAVAWHV 81

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           ++++ + I   NI  AT+ A+  AV  L   P    IDG  IPE L   A AV+KGDS  
Sbjct: 82  AASTPEEIASLNILHATMLAMKRAVYGLAARPEKIFIDGNRIPEHLGIPAEAVVKGDSKI 141

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           + I+AAS++AK  RD  M    ++ P YGFD H GY T +H + +K+ G    HR  F P
Sbjct: 142 IEISAASVLAKTARDAEMYALAQRRPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 201

Query: 204 LRNL 207
           +RNL
Sbjct: 202 VRNL 205


>gi|268683032|ref|ZP_06149894.1| ribonuclease HII [Neisseria gonorrhoeae PID332]
 gi|268623316|gb|EEZ55716.1| ribonuclease HII [Neisseria gonorrhoeae PID332]
          Length = 212

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/184 (43%), Positives = 109/184 (59%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83
            AG+DE GRG L G V  AA+IL +  ++P G+ DSKK+S KKR+ L E I   A+   +
Sbjct: 23  TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKEQAVAWHV 81

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           ++++ + I   NI  AT+ A+  AV  L   P    IDG  IPE L   A AV+KGDS  
Sbjct: 82  AASTPEEIASLNILHATMLAMKRAVYGLAARPEKIFIDGNRIPEHLGIPAEAVVKGDSKI 141

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           + I+AAS++AK  RD  M    ++ P YGFD H GY T +H + +K+ G    HR  F P
Sbjct: 142 IEISAASVLAKTARDAEMYALAQRRPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 201

Query: 204 LRNL 207
           +RNL
Sbjct: 202 VRNL 205


>gi|166364262|ref|YP_001656535.1| ribonuclease HII [Microcystis aeruginosa NIES-843]
 gi|189043628|sp|B0JV09|RNH2_MICAN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166086635|dbj|BAG01343.1| ribonuclease HII [Microcystis aeruginosa NIES-843]
          Length = 208

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/184 (42%), Positives = 112/184 (60%), Gaps = 4/184 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81
           +AG+DEVGRGAL GPVV A ++  P+        G+ DSK++S +KR++L  +I    + 
Sbjct: 7   IAGVDEVGRGALFGPVVAAVVVTVPSGFARLWELGVKDSKQLSPQKRQKLSRQIQRDFVC 66

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
            I  A+ + ID+ NI  A+L A+  A+  L + P    +DG+ I +DL     AVI+GD 
Sbjct: 67  RIGYATVKEIDRLNIFHASLLAMSRAIGKLPLSPSLCWVDGKHIIKDLSIPQKAVIQGDQ 126

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            S  IAAASI+AKV RD L+   H++YPDYG   H GY TA+H + I   G +  HRL+F
Sbjct: 127 QSPVIAAASIVAKVWRDDLITRWHRRYPDYGLARHKGYGTAQHLEAIGNYGLTSQHRLSF 186

Query: 202 RPLR 205
            P +
Sbjct: 187 SPCQ 190


>gi|299067473|emb|CBJ38672.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum CMR15]
          Length = 236

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/185 (42%), Positives = 113/185 (61%), Gaps = 11/185 (5%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISSA 86
           G+DE GRG LAGPV   A++L+P     G+ DSK ++ KKRE LY++I   A+   ++ A
Sbjct: 31  GVDEAGRGPLAGPVTAGAVVLNPRKPIQGLADSKVLTAKKREALYDEIVEKALAWHVAEA 90

Query: 87  SHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLPCQAFAV---IKGD 140
           + + ID+ NI  AT+ A+  AV+ +    V+P    +DG   P+     AFAV   +KGD
Sbjct: 91  TVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVDGNRCPQ----VAFAVEAIVKGD 146

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           ++  +I+AASI+AKVTRDR +   H  +P YGFD H GY T +H   I+  G +  HR +
Sbjct: 147 ALVPAISAASILAKVTRDRQLAALHIAFPQYGFDVHAGYGTPQHLAAIERHGVTPHHRRS 206

Query: 201 FRPLR 205
           F P+R
Sbjct: 207 FAPVR 211


>gi|193211692|ref|YP_001997645.1| ribonuclease HII [Chlorobaculum parvum NCIB 8327]
 gi|238692672|sp|B3QQY0|RNH2_CHLP8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|193085169|gb|ACF10445.1| Ribonuclease H [Chlorobaculum parvum NCIB 8327]
          Length = 205

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 113/193 (58%), Gaps = 6/193 (3%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYEKIT 76
           +N+  V GIDE GRG LAGPVV AA+    +  P GI    +DSKK++ + REEL   I 
Sbjct: 12  ENLSRVCGIDEAGRGPLAGPVVAAAVAFPRHFKPTGILEKLDDSKKLTAELREELAPAIR 71

Query: 77  SSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135
            SA   +++    + ID+ NI +AT+ A+  AVE+L   P   L+DG      LP     
Sbjct: 72  ESAEAWAVAVVDAEIIDRINILQATMLAMNQAVESLAATPELLLVDGNRFRPVLPIPYQT 131

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           ++KGDS   SIAAAS++AK  RD LM     +YP YGFD H GYPTA+H + I   G   
Sbjct: 132 IVKGDSKVFSIAAASVLAKTRRDELMVAYAAEYPAYGFDLHFGYPTARHVEAIARHGRCA 191

Query: 196 IHRLTFRPLRNLS 208
           IHR +F+ LR L 
Sbjct: 192 IHRKSFK-LRKLG 203


>gi|34580789|ref|ZP_00142269.1| ribonuclease HII [Rickettsia sibirica 246]
 gi|28262174|gb|EAA25678.1| ribonuclease HII [Rickettsia sibirica 246]
          Length = 193

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/177 (50%), Positives = 115/177 (64%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           VAGIDE GRG LAGPVV +A+I+D  NI  GI DSKK+S KKRE LYE+ITS+ + + + 
Sbjct: 17  VAGIDEAGRGPLAGPVVASAVIVDNANIITGIKDSKKLSKKKRELLYEQITSNYVWATAI 76

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            SH  ID  NI +AT  A   AV NL + P   L+DG    +D   +  ++I GD++SLS
Sbjct: 77  ISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKDE--RFVSIINGDNLSLS 134

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           IAAASI+AKVTRDRLM     ++P Y +  + GY T +H + I   G S  HR +FR
Sbjct: 135 IAAASIVAKVTRDRLMLDLSAEFPQYLWHKNSGYGTKEHIEAINIHGLSPYHRRSFR 191


>gi|284051073|ref|ZP_06381283.1| ribonuclease HII [Arthrospira platensis str. Paraca]
          Length = 223

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 111/200 (55%), Gaps = 5/200 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKK 67
           ++L     + +   VAGIDEVGRGA  GPVV AA+ L    I      G+ DSKK++   
Sbjct: 8   YQLPPAFEQLSWTAVAGIDEVGRGAWFGPVVAAAVQLSETTILELAAAGVKDSKKLTPTL 67

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L   I S AI   I  AS + ID+ NI +AT  A+  +V  L   P+  L+DG  + 
Sbjct: 68  RASLSTLIRSKAIACGIGWASAREIDRLNILQATQLAMRRSVLKLDPPPQLCLVDGNRLI 127

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            +L     A++KGDS  + IAA+SI+AKV RD LM    + YP YG   H GY T +H+Q
Sbjct: 128 PNLSIPQQAIVKGDSHCIVIAASSILAKVWRDELMTRLDRTYPQYGLAKHKGYGTKQHKQ 187

Query: 187 VIKEKGPSCIHRLTFRPLRN 206
            ++  GP   HR +F P+R 
Sbjct: 188 ALQSYGPCFHHRFSFAPVRQ 207


>gi|240170577|ref|ZP_04749236.1| ribonuclease HII [Mycobacterium kansasii ATCC 12478]
          Length = 239

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/201 (40%), Positives = 116/201 (57%), Gaps = 10/201 (4%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE+ +    + PVAG+DEVGRGA AGP+VVAA +L PN +     ++DSKK++ K RE+L
Sbjct: 20  LESALHRSGLGPVAGVDEVGRGACAGPLVVAACVLGPNRLESLAALDDSKKLTEKAREKL 79

Query: 72  YEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           +  I   A    ++ I S     +D+  +H A ++ +  AV  L V P   L DG  +P 
Sbjct: 80  FPLICRYALAYHVVFIPSVE---VDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVP- 135

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            LP  +  VI GD+ +  IAAAS++AKV+RDRLM     +YP YGF  H GY T  H   
Sbjct: 136 GLPMPSLPVIGGDAAAACIAAASVLAKVSRDRLMVAMDAQYPGYGFAEHKGYSTPAHTLA 195

Query: 188 IKEKGPSCIHRLTFRPLRNLS 208
           +   GP   HR +F  +R ++
Sbjct: 196 LARLGPCPEHRYSFINVRRVA 216


>gi|116491049|ref|YP_810593.1| RNase HII [Oenococcus oeni PSU-1]
 gi|290890530|ref|ZP_06553605.1| hypothetical protein AWRIB429_0995 [Oenococcus oeni AWRIB429]
 gi|116091774|gb|ABJ56928.1| RNase HII [Oenococcus oeni PSU-1]
 gi|290479926|gb|EFD88575.1| hypothetical protein AWRIB429_0995 [Oenococcus oeni AWRIB429]
          Length = 209

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/200 (40%), Positives = 120/200 (60%), Gaps = 3/200 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           R  F+ E  + ++    +AGIDEVGRG +AGPVV  + IL  N       DSK+ + ++R
Sbjct: 11  RIRFKFENELNDEGYQIIAGIDEVGRGCVAGPVVACSCILPANFNVSETYDSKRFNKRQR 70

Query: 69  EELYEKIT-SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
             L E+I  +S + +   AS   ID  NI+++   A+  +V NL  +P + LID  ++  
Sbjct: 71  FLLEEEIKKTSCLFAFGEASVTEIDLINIYQSARLAMKRSVMNLLQMPDALLIDAMAV-- 128

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           DL  +   +I GD +S SIAAASI+AK  RDR+M    +KYP+YGF+ +VGY T++ ++ 
Sbjct: 129 DLNLKQLKIIHGDQLSNSIAAASILAKCHRDRIMIKMAEKYPEYGFERNVGYLTSEAKKA 188

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           + E G + IHR TF P+  L
Sbjct: 189 LLEYGITPIHRKTFAPISKL 208


>gi|120403186|ref|YP_953015.1| ribonuclease HII [Mycobacterium vanbaalenii PYR-1]
 gi|166226631|sp|A1T759|RNH2_MYCVP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|119956004|gb|ABM13009.1| RNase HII [Mycobacterium vanbaalenii PYR-1]
          Length = 249

 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/197 (40%), Positives = 114/197 (57%), Gaps = 4/197 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE+ +    + PVAG+DEVGRGA AGP+VVAA +L PN +     ++DSKK++  +RE L
Sbjct: 20  LESALYRAGLGPVAGVDEVGRGACAGPLVVAACVLGPNRLESLAALDDSKKLNENERERL 79

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+   +     Q +D+  +H A ++ +  AV  L + P   L DG  +P  LP
Sbjct: 80  FPLIRRYALAYHVVFIPSQEVDRRGVHVANIEGMRRAVAGLSLRPGYVLSDGFRVP-GLP 138

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  V+ GD+ +  IAAAS++AKV+RDRLM     ++P YGF  H GY T  H   +  
Sbjct: 139 MPSLPVVGGDAAAACIAAASVLAKVSRDRLMVAMEDEHPGYGFAEHKGYSTRAHSAALAR 198

Query: 191 KGPSCIHRLTFRPLRNL 207
            GPS  HR +F  +R L
Sbjct: 199 LGPSSQHRYSFINVRRL 215


>gi|291569313|dbj|BAI91585.1| ribonuclease HII [Arthrospira platensis NIES-39]
          Length = 231

 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 111/200 (55%), Gaps = 5/200 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKK 67
           ++L     + +   VAGIDEVGRGA  GPVV AA+ L    I      G+ DSKK++   
Sbjct: 8   YQLPPAFEQLSWTAVAGIDEVGRGAWFGPVVAAAVQLSETTILELAAAGVKDSKKLTPTL 67

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L   I S AI   I  AS + ID+ NI +AT  A+  +V  L   P+  L+DG  + 
Sbjct: 68  RASLSTLIRSKAIACGIGWASAREIDRLNILQATQLAMRRSVLKLDPPPQLCLVDGNRLI 127

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            +L     A++KGDS  + IAA+SI+AKV RD LM    + YP YG   H GY T +H+Q
Sbjct: 128 PNLSIPQQAIVKGDSHCIVIAASSILAKVWRDELMTRLDRTYPQYGLAKHKGYGTKQHKQ 187

Query: 187 VIKEKGPSCIHRLTFRPLRN 206
            ++  GP   HR +F P+R 
Sbjct: 188 ALQSYGPCFHHRFSFAPVRQ 207


>gi|313896353|ref|ZP_07829906.1| ribonuclease HII [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975152|gb|EFR40614.1| ribonuclease HII [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 258

 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/186 (48%), Positives = 118/186 (63%), Gaps = 8/186 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI---IS 82
           VAG+DE GRG LAGPV VAA IL        +NDSKK+S K R EL+E+IT  AI   ++
Sbjct: 72  VAGVDEAGRGPLAGPVAVAAAILPKELYLPRLNDSKKLSAKVRAELFEEITEKAIAYHVT 131

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDS 141
           +  A+   ID+ NI +AT   +Y AV  L   P   L+D   +P+  +P Q+  +IKGD+
Sbjct: 132 LIDAAE--IDRINILQATRCGMYEAVAALTPAPEEVLVDAVELPQLRMPVQS--IIKGDA 187

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            S SIAAASI+AKVTRDRLM     +YP YGF  H GY TA+H   I+  G + IHR TF
Sbjct: 188 KSASIAAASILAKVTRDRLMERYDTEYPGYGFAGHKGYGTAEHIAAIRALGVTPIHRRTF 247

Query: 202 RPLRNL 207
            P+R++
Sbjct: 248 EPIRSM 253


>gi|300691590|ref|YP_003752585.1| ribonuclease HII (RNase HII) [Ralstonia solanacearum PSI07]
 gi|299078650|emb|CBJ51308.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum PSI07]
          Length = 242

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 79/185 (42%), Positives = 114/185 (61%), Gaps = 11/185 (5%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISSA 86
           G+DE GRG LAGPV  AA++L+P     G+ DSK ++ KKRE LY++I   A+   ++ A
Sbjct: 37  GVDEAGRGPLAGPVTAAAVVLNPRKPIKGLADSKVLTAKKREALYDEIVEKALAWHVAEA 96

Query: 87  SHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLPCQAFAV---IKGD 140
           + + ID+ NI  AT+ A+  AV+ +    V+P    +DG   P+     AFAV   +KGD
Sbjct: 97  TVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVDGNRCPQ----VAFAVEAIVKGD 152

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           ++  +I+AASI+AKVTRDR +   H  +P YGFD H GY T +H   I+  G +  HR +
Sbjct: 153 ALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAGYGTPQHLAAIELHGVTPHHRRS 212

Query: 201 FRPLR 205
           F P+R
Sbjct: 213 FAPVR 217


>gi|323143575|ref|ZP_08078252.1| ribonuclease HII [Succinatimonas hippei YIT 12066]
 gi|322416638|gb|EFY07295.1| ribonuclease HII [Succinatimonas hippei YIT 12066]
          Length = 213

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 77/183 (42%), Positives = 107/183 (58%), Gaps = 1/183 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           V G DE GRG L G VV A +ILDP+    G+ DSKK+S KKR+ L  +I  +A+   I 
Sbjct: 20  VCGADEAGRGPLVGNVVAACVILDPSRPISGLADSKKLSEKKRDALALQIKENALAYGIG 79

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             + + ID+ NI  A+L+A+  A  N+       LIDG  +  D P    AV+KGD+   
Sbjct: 80  QCTPKEIDRMNILYASLEAMRRAYVNMHKTCELMLIDGNKLIPDFPLAMQAVVKGDARVP 139

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AK  RD  +    K+YP+YGF  H GYPTA H +V+ +      +R+T+ P+
Sbjct: 140 EISAASILAKTERDAQLYALDKQYPEYGFARHKGYPTAAHFEVLHKLPLLSCYRMTYAPI 199

Query: 205 RNL 207
           R L
Sbjct: 200 RKL 202


>gi|282883154|ref|ZP_06291753.1| ribonuclease HII [Peptoniphilus lacrimalis 315-B]
 gi|281296966|gb|EFA89463.1| ribonuclease HII [Peptoniphilus lacrimalis 315-B]
          Length = 205

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 84/194 (43%), Positives = 114/194 (58%), Gaps = 9/194 (4%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E   R+K    +AGIDEVGRG+L G V+  AII+  ++   G+NDSKK++ KKR+ELY K
Sbjct: 7   EKDYRKKGSKLIAGIDEVGRGSLFGDVLSCAIIMKEDSNIEGVNDSKKLTAKKRKELYNK 66

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALIDGRSIPE 127
           I   ++ + I  A  + IDK NI  AT  ++  A+ENL+      V+P   LID  +I  
Sbjct: 67  ILEDSLAVGIGRADAKTIDKLNIKMATHLSMVRAIENLRDSQGNLVVPDLVLIDAENIET 126

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +     ++IKGD    SIA ASIIAKV RD L       YP YG + H GY T  H++ 
Sbjct: 127 TIF--QHSIIKGDENCYSIACASIIAKVYRDSLCDKWATIYPGYGIEKHKGYGTKFHREA 184

Query: 188 IKEKGPSCIHRLTF 201
           +K  GPS +HR +F
Sbjct: 185 LKAYGPSPMHRKSF 198


>gi|110598302|ref|ZP_01386577.1| Ribonuclease H [Chlorobium ferrooxidans DSM 13031]
 gi|110340110|gb|EAT58610.1| Ribonuclease H [Chlorobium ferrooxidans DSM 13031]
          Length = 205

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 76/183 (41%), Positives = 113/183 (61%), Gaps = 6/183 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-----INDSKKISHKKREELYEKITSSAI 80
           V GIDE GRG LAGPVV AA++      P G     +NDSKK+S + REEL   I ++A+
Sbjct: 16  VCGIDEAGRGPLAGPVVAAAVVFSRWFSPEGSILEKLNDSKKLSSRVREELAPAIKAAAL 75

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             +++    + ID+ NI +AT+ A+  ++E L ++P   L+DG      LP     ++KG
Sbjct: 76  YWAVTEIEPEIIDRINIFQATMLAMNRSIEALGMLPELLLVDGNRFRPHLPIPYETIVKG 135

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D+   SIAAAS++AK  RD +M    + +P+YGFD H GY TA+H + I++ G   +HR+
Sbjct: 136 DAKVFSIAAASVLAKTRRDEIMTACSRSWPEYGFDRHFGYATAEHVRAIRQYGRCPLHRV 195

Query: 200 TFR 202
           +FR
Sbjct: 196 SFR 198


>gi|110639206|ref|YP_679415.1| RNase HII [Cytophaga hutchinsonii ATCC 33406]
 gi|123163320|sp|Q11R91|RNH2_CYTH3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|110281887|gb|ABG60073.1| RNase HII [Cytophaga hutchinsonii ATCC 33406]
          Length = 202

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 75/177 (42%), Positives = 110/177 (62%), Gaps = 2/177 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG +AGPVV AA+IL PN     +NDSKK++ K+RE L + I   A+   ++ 
Sbjct: 16  AGLDEAGRGCMAGPVVAAAVILPPNYKHSLLNDSKKLTIKQRELLRQDIIRDALDYHVAE 75

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQ-VIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            SH  ID+ NI  AT+ A++ AV+ L+   P   LIDG    +    +   +++GD + L
Sbjct: 76  VSHTVIDQINILNATMKAMHKAVKGLKKQQPNLLLIDGNRFKQYTGIEHVCIVQGDGLYL 135

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SIAAAS++AK  RD LM    K++P+YG+D + GY T KH+  ++  G +  HR +F
Sbjct: 136 SIAAASVLAKTHRDSLMERLAKEHPEYGWDVNAGYATEKHRLAMETHGLTPYHRTSF 192


>gi|94986666|ref|YP_594599.1| ribonuclease HII [Lawsonia intracellularis PHE/MN1-00]
 gi|189043608|sp|Q1MRU8|RNH2_LAWIP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|94730915|emb|CAJ54278.1| ribonuclease HII [Lawsonia intracellularis PHE/MN1-00]
          Length = 224

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/211 (42%), Positives = 124/211 (58%), Gaps = 18/211 (8%)

Query: 4   NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKK 62
            S+P  PH     +V +      AG+DEVGRG LAGPVV  A+IL P+ I   G+ DSK 
Sbjct: 15  QSLPITPH----ELVYDNLSLLTAGLDEVGRGCLAGPVVAGAVIL-PDTISIDGLADSKT 69

Query: 63  ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           IS  +R  L +KI  +AI   I     + ID+ NI +A+L A+ HA   L+  P   LID
Sbjct: 70  ISSNRRYILAKKIYETAISWGIGVVWPKEIDEINILQASLKAMAHAATVLKTFPELLLID 129

Query: 122 G-RSIPED---------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171
           G ++IP+          LP Q  ++IKGD+   +I+AASIIAK  RD LM    K+YP Y
Sbjct: 130 GNKAIPQKFFIQFGWNFLPIQ-HSIIKGDASIPAISAASIIAKTFRDTLMSKLDKRYPQY 188

Query: 172 GFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            F  + GY +  H++++++ GPS IHR+TF+
Sbjct: 189 NFSKNKGYGSKTHREILQKIGPSPIHRMTFK 219


>gi|31794078|ref|NP_856571.1| ribonuclease HII [Mycobacterium bovis AF2122/97]
 gi|39932282|sp|Q7TXM7|RNH2_MYCBO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|31619673|emb|CAD96613.1| PROBABLE RIBONUCLEASE HII PROTEIN RNHB (RNASE HII) [Mycobacterium
           bovis AF2122/97]
          Length = 264

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 82/201 (40%), Positives = 117/201 (58%), Gaps = 10/201 (4%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE+ +    + PVAG+DEVGRGA AGP+VVAA +L P  I     ++DSKK+S + RE+L
Sbjct: 23  LESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDDSKKLSEQAREKL 82

Query: 72  YEKITSSAI----ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           +  I   A+    + I SA    +D+H +H A ++ +  AV  L V P   L DG  +P 
Sbjct: 83  FPLICRYAVAYHVVFIPSAE---VDRHGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVP- 138

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            LP  +  VI GD+ +  IAAAS++AKV+RDR+M      +P YGF  H GY T  H + 
Sbjct: 139 GLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAHSRA 198

Query: 188 IKEKGPSCIHRLTFRPLRNLS 208
           +   GP   HR +F  +R ++
Sbjct: 199 LARLGPCPQHRYSFINVRRVA 219


>gi|241662957|ref|YP_002981317.1| ribonuclease HII [Ralstonia pickettii 12D]
 gi|309782124|ref|ZP_07676854.1| ribonuclease HII [Ralstonia sp. 5_7_47FAA]
 gi|240864984|gb|ACS62645.1| Ribonuclease H [Ralstonia pickettii 12D]
 gi|308919190|gb|EFP64857.1| ribonuclease HII [Ralstonia sp. 5_7_47FAA]
          Length = 232

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 77/184 (41%), Positives = 112/184 (60%), Gaps = 5/184 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           + G+DE GRG LAGPV  AA++L+P     G+ DSK ++ KKRE LY++I   A+   ++
Sbjct: 28  LCGVDEAGRGPLAGPVTAAAVVLNPRKPIKGLADSKILTAKKREALYDEIVEKALAWHVA 87

Query: 85  SASHQYIDKHNIHKATLDAI---YHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
            A+ + ID+ NI  AT+ A+    H V  L  +P    +DG   P+ +     AV+KGD+
Sbjct: 88  EATVEEIDRINILHATMLAMQRAVHGVAALGTLPDLVQVDGNRCPQ-VAFAVEAVVKGDA 146

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +  +I+AASI+AKVTRDR +   H ++P YGFD H GY T +H   I   G +  HR +F
Sbjct: 147 LVPAISAASILAKVTRDRQLAALHVEFPLYGFDVHAGYGTPQHLAAIDLHGVTPHHRRSF 206

Query: 202 RPLR 205
            P+R
Sbjct: 207 APVR 210


>gi|290894532|ref|ZP_06557482.1| rnhB protein [Listeria monocytogenes FSL J2-071]
 gi|290555913|gb|EFD89477.1| rnhB protein [Listeria monocytogenes FSL J2-071]
          Length = 261

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/204 (43%), Positives = 127/204 (62%), Gaps = 5/204 (2%)

Query: 4   NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           N + E   +E +    ++    +AG+DEVGRG LAGPVV AA+IL  +    GINDSK++
Sbjct: 53  NKLEEMKQYETDLF--QQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQL 110

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           S  KR+ LYE I + AI + +    H  ID+ NI++AT  A+  A++ LQ  P   LID 
Sbjct: 111 SEAKRDALYETIQTEAIAVGVGIIEHNVIDQVNIYEATKLAMRAALDQLQPEPDFVLID- 169

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
            ++P        ++IKGD+ S+SIAAASIIAKVTRDRLM++  + YP Y F +++GY T 
Sbjct: 170 -AMPLKYSDAELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDETYPGYDFANNMGYGTK 228

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRN 206
           KH   +   G   IHR++F P++ 
Sbjct: 229 KHLHGLDTIGICPIHRISFAPVKE 252


>gi|83749784|ref|ZP_00946758.1| Ribonuclease HII [Ralstonia solanacearum UW551]
 gi|207743230|ref|YP_002259622.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum
           IPO1609]
 gi|83723541|gb|EAP70745.1| Ribonuclease HII [Ralstonia solanacearum UW551]
 gi|206594627|emb|CAQ61554.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum
           IPO1609]
          Length = 236

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 75/183 (40%), Positives = 112/183 (61%), Gaps = 5/183 (2%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISSA 86
           G+DE GRG LAGPV   A++L+P     G+ DSK ++ KKRE LY++I   A+   ++ A
Sbjct: 31  GVDEAGRGPLAGPVTAGAVVLNPRKPIKGLADSKVLTAKKREALYDEIVEKALAWHVAEA 90

Query: 87  SHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + + ID+ NI  AT+ A+  AV+ +    V+P    +DG   P+ +     A++KGD++ 
Sbjct: 91  TVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVDGNRCPQ-VAFAVEAIVKGDALV 149

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AKVTRDR +   H  +P YGFD H GY T +H   I+  G +  HR +F P
Sbjct: 150 PAISAASILAKVTRDRQLAALHIAFPHYGFDVHAGYGTPQHLAAIERHGVTPHHRRSFAP 209

Query: 204 LRN 206
           +R 
Sbjct: 210 VRR 212


>gi|156742530|ref|YP_001432659.1| ribonuclease HII [Roseiflexus castenholzii DSM 13941]
 gi|189043650|sp|A7NM86|RNH2_ROSCS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|156233858|gb|ABU58641.1| Ribonuclease H [Roseiflexus castenholzii DSM 13941]
          Length = 224

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 82/189 (43%), Positives = 110/189 (58%), Gaps = 7/189 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHKKREELYEKITSSAI 80
           +AGIDE GRG  AGPVV AA+IL    I       G+ DSK ++  +R  L+E+ITS A+
Sbjct: 23  IAGIDEAGRGCWAGPVVAAAVILPERVIAKPELLDGVADSKMLTPAQRVALFERITSLAV 82

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             ++ S     ID H I  AT  A+  A+  L +     LID   + +  P     ++KG
Sbjct: 83  AWAVGSVPAHVIDSHGILPATRLAMQVALLRLPLPADVLLIDAVRL-DGWPLPQRVLVKG 141

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D   LSIAAASIIAKV RDR M    + +  YGF +H GY TA HQ+ ++  GP+  HRL
Sbjct: 142 DVRCLSIAAASIIAKVMRDRFMEGLGRYWTRYGFAAHKGYGTAAHQEALRRYGPTPHHRL 201

Query: 200 TFRPLRNLS 208
           TFRPL +++
Sbjct: 202 TFRPLCDMA 210


>gi|20372971|dbj|BAB91155.1| ribonuclease HII [Geobacillus stearothermophilus]
          Length = 259

 Score =  135 bits (339), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 82/182 (45%), Positives = 118/182 (64%), Gaps = 3/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AGIDE GRG LAGPVV A++IL P+    G++DSK+++  KRE L+ +I + A+ + I 
Sbjct: 74  IAGIDEAGRGPLAGPVVAASVILPPDAYLPGLDDSKRLTAAKREALFAQIEACAVAVGIG 133

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S   ID+ NI++AT  A+  AV  L   P   L+D  ++P  LP +    +KGD+ S 
Sbjct: 134 IVSAAEIDERNIYEATKQAMAKAVSALSPPPDYLLVDAMAVPCALPQRRL--MKGDANSA 191

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASI+AKVTRDRLM+   ++YP YGF  H+GY T +H + I+  G +  HR +F P+
Sbjct: 192 SIAAASIMAKVTRDRLMKELDRRYPQYGFARHMGYGTPEHLEAIRRYGITPEHRRSFAPV 251

Query: 205 RN 206
           + 
Sbjct: 252 KE 253


>gi|207723368|ref|YP_002253767.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum MolK2]
 gi|206588567|emb|CAQ35530.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum MolK2]
          Length = 236

 Score =  135 bits (339), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 78/186 (41%), Positives = 113/186 (60%), Gaps = 11/186 (5%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISSA 86
           G+DE GRG LAGPV   A++L+P     G+ DSK ++ KKRE LY++I   A+   ++ A
Sbjct: 31  GVDEAGRGPLAGPVTAGAVVLNPRKPIKGLADSKVLTAKKREALYDEIVEKALAWHVAEA 90

Query: 87  SHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLPCQAFAV---IKGD 140
           + + ID+ NI  AT+ A+  AV+ +    V+P    +DG   P+     AFAV   +KGD
Sbjct: 91  TVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVDGNRCPQ----VAFAVEAIVKGD 146

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           ++  +I+AASI+AKVTRDR +   H  +P YGFD H GY T +H   I+  G +  HR +
Sbjct: 147 ALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAGYGTPQHLAAIERHGVTPHHRRS 206

Query: 201 FRPLRN 206
           F P+R 
Sbjct: 207 FAPVRR 212


>gi|157828142|ref|YP_001494384.1| ribonuclease HII [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165932842|ref|YP_001649631.1| ribonuclease HII [Rickettsia rickettsii str. Iowa]
 gi|166226649|sp|A8GR51|RNH2_RICRS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|189043649|sp|B0BWJ9|RNH2_RICRO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157800623|gb|ABV75876.1| ribonuclease HII [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165907929|gb|ABY72225.1| ribonuclease HII [Rickettsia rickettsii str. Iowa]
          Length = 193

 Score =  135 bits (339), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/177 (50%), Positives = 114/177 (64%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           VAGIDE GRG LAGPVV +A+I+D  NI  GI DSKK+S KKRE LYE+ITS+   + + 
Sbjct: 17  VAGIDEAGRGPLAGPVVASAVIVDNANIITGIKDSKKLSKKKRELLYEQITSNYAWATAI 76

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            SH  ID  NI +AT  A   AV NL + P   L+DG    +D   +  ++I GD++SLS
Sbjct: 77  ISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKDE--RFVSIINGDNLSLS 134

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           IAAASIIAKVTRDRLM     ++P Y +  + GY T +H + I   G S  HR +FR
Sbjct: 135 IAAASIIAKVTRDRLMLDLSAEFPQYLWHKNSGYGTKEHIEAINIHGLSPYHRRSFR 191


>gi|158337229|ref|YP_001518404.1| ribonuclease HII [Acaryochloris marina MBIC11017]
 gi|189043525|sp|B0CAM1|RNH2_ACAM1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|158307470|gb|ABW29087.1| ribonuclease HII [Acaryochloris marina MBIC11017]
          Length = 198

 Score =  135 bits (339), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 80/183 (43%), Positives = 109/183 (59%), Gaps = 5/183 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI- 80
           +AG+DEVGRGAL GPVV A +IL    I      G+ DSKK+S ++R  L  +I   A  
Sbjct: 8   IAGVDEVGRGALFGPVVAATVILSDGAIEQLVAQGMTDSKKLSPQRRMILMNQIREVATG 67

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             +  AS   ID+ NI +A+L A+  AV  L   P+  L+DG     +LP     V+KGD
Sbjct: 68  FRVGMASVYEIDRLNILQASLLAMRRAVLGLPSTPQLCLVDGNQRIPNLPVPQRTVVKGD 127

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
                IAAASI+AKV RD+L+    ++YP Y   S+ GY +AKH+Q ++E GP+  HRL+
Sbjct: 128 QSEPEIAAASILAKVWRDQLIVRLDQRYPGYDLASNKGYGSAKHRQALRELGPTRQHRLS 187

Query: 201 FRP 203
           F P
Sbjct: 188 FAP 190


>gi|303246153|ref|ZP_07332434.1| Ribonuclease H [Desulfovibrio fructosovorans JJ]
 gi|302492549|gb|EFL52420.1| Ribonuclease H [Desulfovibrio fructosovorans JJ]
          Length = 206

 Score =  134 bits (338), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 82/186 (44%), Positives = 112/186 (60%), Gaps = 10/186 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83
           +AG+DE GRG LAGPVV  A+IL +  ++PF + DSKK+S  +RE L   I + AI  ++
Sbjct: 7   IAGVDEAGRGCLAGPVVAGAVILPEAYDLPF-LTDSKKLSAARREGLAPAIKAQAIAWAV 65

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPED------LPCQAFAV 136
             A    ID+ NI +AT  A+  AV  L+V P +  IDG + IP         P    A+
Sbjct: 66  GMAWPVEIDRINILQATFAAMSRAVRALRVRPEALKIDGNKRIPAAHLANIAAPPPQEAI 125

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           I GD    +I+AASI+AK +RD+LM I  +++P YGF SH GY    H   ++E GP  +
Sbjct: 126 IGGDLSVPAISAASILAKTSRDKLMTIFDRQFPGYGFASHKGYGAKAHLAALRELGPCRL 185

Query: 197 HRLTFR 202
           HRLTFR
Sbjct: 186 HRLTFR 191


>gi|255037595|ref|YP_003088216.1| Ribonuclease H [Dyadobacter fermentans DSM 18053]
 gi|254950351|gb|ACT95051.1| Ribonuclease H [Dyadobacter fermentans DSM 18053]
          Length = 208

 Score =  134 bits (338), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 74/181 (40%), Positives = 114/181 (62%), Gaps = 1/181 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85
           AG+DEVGRG LAGPVV AA+IL  +     +NDSK+++  +R EL ++I   ++  +++ 
Sbjct: 13  AGLDEVGRGCLAGPVVAAAVILPRDYKHSFLNDSKQLTKAQRLELEKEIIRESVCWAVAE 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
             +  ID+ NI KA+  A++ AV+ L+V P   L+DG             +IKGD+  LS
Sbjct: 73  VDNLEIDRINILKASFLAMHRAVDKLRVRPEHLLVDGNRFTPYPMIPHTCIIKGDAHYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           IAAAS++AK  RD LM    +++P YG++ +VGYPT  H++ I   GP   HR+TF+ ++
Sbjct: 133 IAAASVLAKNYRDELMSNLSRQFPHYGWEQNVGYPTIHHRKAIVLHGPCSYHRMTFKLIK 192

Query: 206 N 206
           +
Sbjct: 193 S 193


>gi|203283974|ref|YP_002221714.1| ribonuclease H [Borrelia duttonii Ly]
 gi|238690551|sp|B5RKU7|RNH2_BORDL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|201083417|gb|ACH93008.1| ribonuclease H [Borrelia duttonii Ly]
          Length = 181

 Score =  134 bits (338), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 78/178 (43%), Positives = 108/178 (60%), Gaps = 1/178 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           + GIDEVGRG + GPV+ AA+I     N    ++DSKK++  KRE L   I  +A  + +
Sbjct: 2   ICGIDEVGRGCIFGPVLSAAVIFKSKPNFLNELDDSKKLTKTKREYLSALILENAYYAFA 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S++ IDK NIH A+L A+  A + L +     L+DG+ IP+    Q  A+IKGDS+  
Sbjct: 62  DISNEIIDKINIHNASLLAMQIAYQKLNIECNLVLVDGKFIPKIQAKQIRAIIKGDSMID 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            I AASIIAKV RD+LM    K YP YG   + GYPT +H+  IK+ G   +HR +F+
Sbjct: 122 EIKAASIIAKVQRDKLMVEYDKIYPLYGLKKNKGYPTKEHKDAIKKHGILSLHRKSFQ 179


>gi|220906598|ref|YP_002481909.1| ribonuclease HII [Cyanothece sp. PCC 7425]
 gi|219863209|gb|ACL43548.1| Ribonuclease H [Cyanothece sp. PCC 7425]
          Length = 206

 Score =  134 bits (338), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 78/198 (39%), Positives = 120/198 (60%), Gaps = 3/198 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKR 68
           P  ++E    ++    + GIDEVGRG L+GPVV AA++L     P  G+ DSK +S ++R
Sbjct: 5   PDLQVEQTFWQRGQLRLVGIDEVGRGCLSGPVVAAAVLLPAYCEPIPGVRDSKTLSAQRR 64

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           + L +KI   AI + I +AS   I++ NI +AT  A+  A++ +       LIDGR +P 
Sbjct: 65  QVLDQKIRQQAIAVGIGAASVAEINQVNILQATYLAMQRALQRIGGYDH-LLIDGRPVPV 123

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
             P    A+++GD+ S +IA ASI+AKV RDR M+   ++YP YG++ +VGY T +H   
Sbjct: 124 FEPEHHTAIVEGDASSYAIACASIVAKVRRDRFMQHLARRYPGYGWEQNVGYGTKQHLAA 183

Query: 188 IKEKGPSCIHRLTFRPLR 205
           I   G +  HR +F+P++
Sbjct: 184 ITSLGVTPHHRRSFKPVQ 201


>gi|296127016|ref|YP_003634268.1| ribonuclease H [Brachyspira murdochii DSM 12563]
 gi|296018832|gb|ADG72069.1| Ribonuclease H [Brachyspira murdochii DSM 12563]
          Length = 232

 Score =  134 bits (338), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 84/192 (43%), Positives = 115/192 (59%), Gaps = 13/192 (6%)

Query: 26  VAGIDEVGRGALAGPVVVAAII--LDPNN--------IPFGINDSKKISHKKREELYEKI 75
           + GIDEVGRG L GPV VAA+I  L+ NN        I    +DSKKIS KKREELY+KI
Sbjct: 30  ICGIDEVGRGCLFGPVTVAAVIMPLELNNDVEVARENIVEEADDSKKISAKKREELYDKI 89

Query: 76  TSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
            S A+  S+ S   + ID+ NI+ AT  A+ +AV NL + P   LID  ++  D+  +  
Sbjct: 90  ISKALCYSVYSVDAKTIDEINIYNATKLAMVNAVRNLNIKPDILLID--AVKLDIDIKQC 147

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
           ++ KGD  S SI  ASI+AKV RDR+M    + Y  Y    + GY T +H + I+  G S
Sbjct: 148 SITKGDFKSYSIGCASIVAKVERDRMMNELPEVYQKYKVAKNKGYGTKEHMKAIEMYGAS 207

Query: 195 CIHRLTFRPLRN 206
            +HR +F P+++
Sbjct: 208 DMHRYSFEPIKS 219


>gi|296117635|ref|ZP_06836219.1| ribonuclease HII [Corynebacterium ammoniagenes DSM 20306]
 gi|295969366|gb|EFG82607.1| ribonuclease HII [Corynebacterium ammoniagenes DSM 20306]
          Length = 223

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 79/190 (41%), Positives = 106/190 (55%), Gaps = 4/190 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72
           E  + +  + PVAG+DE GRGA AGP+ +AA IL    IP    + DSKK+S K+REEL+
Sbjct: 11  EVALSKAGLGPVAGVDEAGRGACAGPITIAACILPEKIIPSLATLTDSKKLSAKQREELF 70

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I  +A+  SI       IDKH I  A +  +  AV  L+V PR  L D   +      
Sbjct: 71  PAIQRNALAYSIVHIDPGDIDKHGIQHANVSGMRRAVARLEVRPRYILTDALKV-SGFTA 129

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               V+ GD     IAAAS++AKV+RD +M    +KYP YG   H GY TA H + IK  
Sbjct: 130 PYLPVVGGDFAIRCIAAASVLAKVSRDHIMEELEEKYPGYGLGKHKGYGTAVHTEAIKTL 189

Query: 192 GPSCIHRLTF 201
           G + IHR+++
Sbjct: 190 GATAIHRMSY 199


>gi|325141206|gb|EGC63706.1| ribonuclease HII [Neisseria meningitidis CU385]
          Length = 194

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 83/184 (45%), Positives = 109/184 (59%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
            AG+DE GRG L G V  AA+IL +  ++P G+ DSKK+S KKR+ L E I   A     
Sbjct: 5   TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKDQAAAWHV 63

Query: 85  SA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +A S + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  
Sbjct: 64  AAASPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKI 123

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           + I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P
Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183

Query: 204 LRNL 207
           +RNL
Sbjct: 184 VRNL 187


>gi|268611246|ref|ZP_06144973.1| ribonuclease HII [Ruminococcus flavefaciens FD-1]
          Length = 208

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 88/191 (46%), Positives = 122/191 (63%), Gaps = 3/191 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F+ ++ +R K+   + GIDE GRG LAG V  AA+IL+ + +   +NDSKKIS K+RE L
Sbjct: 11  FDYDSELR-KDYPVIVGIDEAGRGPLAGDVYAAAVILNDDTLINYLNDSKKISEKRRELL 69

Query: 72  YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+++   A   SI++AS + ID+ NI +AT  A+  A E L V     L+DG  +P D+ 
Sbjct: 70  YDEVIEKAEKYSIATASVKEIDELNILQATFLAMKRAYEGLGVRADLVLVDGNKLP-DID 128

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            +   VIKGD+ S SI+AASI+AKV RDR MR   +KYP Y FD H GY T  H + ++E
Sbjct: 129 AEMRYVIKGDATSASISAASILAKVARDRYMRDLAEKYPQYEFDRHKGYGTKLHYEKLEE 188

Query: 191 KGPSCIHRLTF 201
            G S +HR +F
Sbjct: 189 FGISEVHRRSF 199


>gi|311694071|gb|ADP96944.1| ribonuclease HII [marine bacterium HP15]
          Length = 228

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 81/184 (44%), Positives = 114/184 (61%), Gaps = 4/184 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84
           +AG+DEVGRG L G VV AA+ILDP+    G+ DSKK++ K+R  LY++I   A   SI 
Sbjct: 18  LAGVDEVGRGPLIGAVVTAAVILDPDRPIAGLADSKKLTEKRRNALYDQILEHAKAWSIG 77

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
                 ID+ NI++AT+ A+  AV  L V+P   L+DG   P+   P +   V+KGDS  
Sbjct: 78  RCESHEIDRLNIYQATMLAMERAVSGLAVVPEYVLVDGNRCPKWRWPSEP--VVKGDSRV 135

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASIIAKVTRDR M     ++P +G   H GYPT  H + ++  G +  HR +FRP
Sbjct: 136 AAISAASIIAKVTRDREMEALEARFPGFGLAQHKGYPTPVHLEALRRLGATIEHRRSFRP 195

Query: 204 LRNL 207
           ++ +
Sbjct: 196 VQEV 199


>gi|317508413|ref|ZP_07966083.1| ribonuclease HII [Segniliparus rugosus ATCC BAA-974]
 gi|316253260|gb|EFV12660.1| ribonuclease HII [Segniliparus rugosus ATCC BAA-974]
          Length = 215

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 75/195 (38%), Positives = 114/195 (58%), Gaps = 6/195 (3%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN---IPFGINDSKKISHKKREE 70
            E+++R   +  VAG+DE GRGA AGP+VVA+ +L P +   +P G++DSK+++ +KRE 
Sbjct: 4   FESVLRRAGLAAVAGVDEAGRGACAGPLVVASCVLKPRSARALP-GLDDSKRLTAQKREW 62

Query: 71  LYEKI-TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L  +I   +A   +       +D   +H+A L+ +  AV  L  +P   L+DG  +P  L
Sbjct: 63  LEPRIFQQAASWHVVVMPPGEVDAMGVHQANLEGMRRAVAGLAEVPDYVLLDGFEVPR-L 121

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              A  V+ GD +   IAAAS++AKV RDR+M    + +P YGF +H GY TA H   + 
Sbjct: 122 GAPARRVVGGDRLVACIAAASVLAKVARDRIMAELDEAHPGYGFATHKGYCTAAHMAALA 181

Query: 190 EKGPSCIHRLTFRPL 204
           E GP   HR ++ P+
Sbjct: 182 ELGPCDQHRYSYAPV 196


>gi|46579247|ref|YP_010055.1| ribonuclease HII [Desulfovibrio vulgaris str. Hildenborough]
 gi|81404983|sp|Q72DU5|RNH2_DESVH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|46448661|gb|AAS95314.1| ribonuclease HII [Desulfovibrio vulgaris str. Hildenborough]
 gi|311233076|gb|ADP85930.1| Ribonuclease H [Desulfovibrio vulgaris RCH1]
          Length = 220

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 85/190 (44%), Positives = 108/190 (56%), Gaps = 11/190 (5%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85
           AGIDE GRG LAGPVV AA+IL       G+ DSKK++  +RE L E I S A+   I  
Sbjct: 19  AGIDEAGRGCLAGPVVAAAVILPQEYALPGLTDSKKLTAARRESLAEGIRSCAVTWGIGV 78

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIP----EDLPCQAF-----A 135
              + ID+ NI +AT  A+  AV  L+  P + LIDG +++P      L C        A
Sbjct: 79  VWPRDIDRINILQATFRAMARAVRVLRQPPPAILIDGDKTLPPHVLTSLSCDGHLPTQRA 138

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           +I GD    +I+AASI+AK  RDRLM    ++Y  YGF  H GY TA+H   I   GP  
Sbjct: 139 IIGGDGCIPAISAASILAKTFRDRLMDTLDRRYHGYGFAKHKGYGTAEHLAAIAAHGPCA 198

Query: 196 IHRLTFRPLR 205
            HRLTFR +R
Sbjct: 199 QHRLTFRGVR 208


>gi|300704217|ref|YP_003745820.1| ribonuclease hII (RNAse hII) [Ralstonia solanacearum CFBP2957]
 gi|299071881|emb|CBJ43210.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum CFBP2957]
          Length = 236

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 74/183 (40%), Positives = 112/183 (61%), Gaps = 5/183 (2%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISSA 86
           G+DE GRG LAGPV   A++L+P     G+ DSK ++ K+RE LY++I   A+   ++ A
Sbjct: 31  GVDEAGRGPLAGPVTAGAVVLNPRKPIKGLADSKVLTAKRREALYDEIVEKALAWHVAEA 90

Query: 87  SHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + + ID+ NI  AT+ A+  AV+ +    V+P    +DG   P+ +     A++KGD++ 
Sbjct: 91  TVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVDGNRCPQ-VAFAVEAIVKGDALV 149

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AKVTRDR +   H  +P YGFD H GY T +H   I+  G +  HR +F P
Sbjct: 150 PAISAASILAKVTRDRQLAALHVAFPHYGFDVHAGYGTPQHLAAIERHGVTPHHRRSFAP 209

Query: 204 LRN 206
           +R 
Sbjct: 210 VRR 212


>gi|269123118|ref|YP_003305695.1| Ribonuclease H [Streptobacillus moniliformis DSM 12112]
 gi|268314444|gb|ACZ00818.1| Ribonuclease H [Streptobacillus moniliformis DSM 12112]
          Length = 199

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 81/186 (43%), Positives = 112/186 (60%), Gaps = 6/186 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84
           + G+DE GRG LAGPVV A + ++  +     +NDSKK++ KKR EL+  +T++  I I 
Sbjct: 13  IIGVDEAGRGPLAGPVVAACVCINKYSKKLEELNDSKKLTDKKRRELFNYLTTNDDIKIG 72

Query: 85  SA--SHQYIDKHNIHKATLDAIYHAVENLQVIPRS-ALIDGRSIPEDLPCQAFAVIKGDS 141
                 + ID+ NI  AT  A+ +A++N++   +   L+DG    +    +  A++KGD 
Sbjct: 73  VGIVDEKVIDEINILNATFLAMNNALDNMEKDEKDLVLVDGNKEIKGYLGKQEAIVKGDG 132

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            SLSIAAASIIAKVTRD +M      YP Y F  H GY T  H + IKEKG   IHRL+F
Sbjct: 133 KSLSIAAASIIAKVTRDNIMEEYDLIYPGYEFAKHKGYGTKMHYECIKEKGRCYIHRLSF 192

Query: 202 RPLRNL 207
             L+NL
Sbjct: 193 --LKNL 196


>gi|120603190|ref|YP_967590.1| ribonuclease HII [Desulfovibrio vulgaris DP4]
 gi|166225183|sp|A1VFE7|RNH2_DESVV RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|120563419|gb|ABM29163.1| RNase HII [Desulfovibrio vulgaris DP4]
          Length = 220

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 84/190 (44%), Positives = 108/190 (56%), Gaps = 11/190 (5%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85
           AGIDE GRG LAGPVV AA+IL       G+ DSKK++  +RE L E I S A+   +  
Sbjct: 19  AGIDEAGRGCLAGPVVAAAVILPQEYTLPGLTDSKKLTAARRESLAEGIRSCAVTWGLGV 78

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIP----EDLPCQAF-----A 135
              + ID+ NI +AT  A+  AV  L+  P + LIDG +++P      L C        A
Sbjct: 79  VWPRDIDRINILQATFRAMARAVRVLRQPPPALLIDGDKTLPPHVLTTLSCDGHLPTQRA 138

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           +I GD    +I+AASI+AK  RDRLM    ++Y  YGF  H GY TA+H   I   GP  
Sbjct: 139 IIGGDGCIPAISAASILAKTFRDRLMDTLDRRYHGYGFAKHKGYGTAEHLAAIAAHGPCA 198

Query: 196 IHRLTFRPLR 205
            HRLTFR +R
Sbjct: 199 QHRLTFRGVR 208


>gi|83816348|ref|YP_446472.1| ribonuclease HII [Salinibacter ruber DSM 13855]
 gi|97189257|sp|Q2S009|RNH2_SALRD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|83757742|gb|ABC45855.1| ribonuclease HII [Salinibacter ruber DSM 13855]
          Length = 200

 Score =  134 bits (337), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 80/196 (40%), Positives = 110/196 (56%), Gaps = 9/196 (4%)

Query: 20  EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E+ +W      VAG+DE GRG LAGPVV AA+I+ P      I DSK +S  +R +    
Sbjct: 5   ERRLWADGYERVAGLDEAGRGCLAGPVVAAAVIMPPQVEITAIQDSKALSEGQRLDARAT 64

Query: 75  ITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL---P 130
           I   A+  SI+  S   ID  NI +A L+A+  A    +  P   L+DG     +L   P
Sbjct: 65  IEDEAVAASIARCSPTEIDDRNILQAALEAMRRAASGCRPPPDFVLVDGNQWDRNLVDAP 124

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                V+KGD+ S SIAAASI+AK  RD LMR  H+ +P+Y + S+VGYPT +H   ++E
Sbjct: 125 WPHETVVKGDAKSQSIAAASILAKTERDALMRDLHEAHPEYDWASNVGYPTQQHYDALRE 184

Query: 191 KGPSCIHRLTFRPLRN 206
            G +  HR +F   R+
Sbjct: 185 HGATPHHRQSFTLFRD 200


>gi|289548139|ref|YP_003473127.1| ribonuclease H [Thermocrinis albus DSM 14484]
 gi|289181756|gb|ADC89000.1| Ribonuclease H [Thermocrinis albus DSM 14484]
          Length = 203

 Score =  134 bits (337), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 79/183 (43%), Positives = 107/183 (58%), Gaps = 4/183 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DE GRG LAGP+V  A+IL P   PF   DSKK+S  +REE Y  I   A+ I  +
Sbjct: 16  VAGVDEAGRGPLAGPLVACAVILPPYTEPFLKGDSKKLSPSEREEAYRIIKERALSIGTA 75

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
               + ID+ NI +AT  A+  A+E+L+      + D   +  D      A+ KGD  SL
Sbjct: 76  VVDSEVIDRINILQATRLAMKRALEDLKHPYDVVITDWVKLDVD---NCIAIPKGDERSL 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
             A AS++AKV RD++M   H+ YP Y F SH GYPT +H Q + +   S IHR +FRP+
Sbjct: 133 CCACASVVAKVLRDKIMEHYHRLYPQYDFASHKGYPTKEHLQRLLQYRESPIHRKSFRPV 192

Query: 205 RNL 207
           + L
Sbjct: 193 KAL 195


>gi|221133301|ref|ZP_03559606.1| ribonuclease H [Glaciecola sp. HTCC2999]
          Length = 189

 Score =  134 bits (337), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 78/180 (43%), Positives = 108/180 (60%), Gaps = 2/180 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP      +NDSKK+S KKRE LY  I   A+  +I 
Sbjct: 3   IAGVDEVGRGPLVGDVVTAAVILDPARPIAALNDSKKLSEKKREALYPIIKEQALAWAIG 62

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A+   ID+ NI +AT+ A+  AV  L + P    +DG  +P D    + A++KGD    
Sbjct: 63  RATPAEIDELNILRATILAMTRAVAGLGIRPDFVQVDGNRLP-DWDYASEAIVKGDGSIA 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M +  K +P+YGF  H GYPT  H   ++       +R +F+P+
Sbjct: 122 CISAASILAKVVRDQEMVVLDKLHPEYGFAQHKGYPTKAHLACLEHLPILSCYRKSFKPV 181


>gi|110004283|emb|CAK98621.1| putative ribonuclease h II protein [Spiroplasma citri]
          Length = 207

 Score =  134 bits (337), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 81/195 (41%), Positives = 117/195 (60%), Gaps = 3/195 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           FE E ++   N   +AG DE GRG LAGP+VV+A+IL  + +   I DSKKI+ K+R +L
Sbjct: 4   FEKEILISYPNTTILAGTDEAGRGCLAGPLVVSAVILPLDYVNDEIKDSKKITAKQRIKL 63

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            ++I S AI  +I   S    ++ N  +A++  +  A++NL V     L D   +     
Sbjct: 64  ADEIMSIAISYTIEIISVAMFEELNPKQASIFGMQQAIDNLMVKSDIILTDAEKLGPSYN 123

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            QA  +IKGDS+S SI AASI+AKVTRD LM    + YP Y F ++ GY T KH   +++
Sbjct: 124 HQA--IIKGDSLSQSIVAASILAKVTRDNLMLKFDQDYPQYDFKNNKGYGTKKHLLALQQ 181

Query: 191 KGPSCIHRLTFRPLR 205
            G + +HR T+RP+R
Sbjct: 182 FGITSLHRKTYRPVR 196


>gi|170750072|ref|YP_001756332.1| ribonuclease H [Methylobacterium radiotolerans JCM 2831]
 gi|170656594|gb|ACB25649.1| Ribonuclease H [Methylobacterium radiotolerans JCM 2831]
          Length = 232

 Score =  134 bits (337), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 81/178 (45%), Positives = 110/178 (61%), Gaps = 7/178 (3%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G DEVGRGAL GPVVVAA+  DP  IP      ++DSK++    RE L   I + A +++
Sbjct: 53  GCDEVGRGALCGPVVVAAVWFDPTAIPPDLLAALDDSKRVPEPVRERLAPLIRAHARVAV 112

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           ++ S   ID+ NI  ATLDA+  AV  L +     L+DGR     LP +A  VI GD + 
Sbjct: 113 AAGSRALIDRINIRGATLDAMARAVARLGLA-APVLVDGRDALPGLPGRA--VIGGDHLV 169

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             IAAASI+AKV RD+LMR   +++P YG++ +VGY TA H+  + + G S  HRL+F
Sbjct: 170 PQIAAASIVAKVLRDQLMRRLARRHPGYGWERNVGYGTAVHRAGLTQLGRSAHHRLSF 227


>gi|118444390|ref|YP_878279.1| ribonuclease HII [Clostridium novyi NT]
 gi|189043585|sp|A0Q0X7|RNH2_CLONN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|118134846|gb|ABK61890.1| ribonuclease H [Clostridium novyi NT]
          Length = 269

 Score =  134 bits (337), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 89/207 (42%), Positives = 120/207 (57%), Gaps = 20/207 (9%)

Query: 18  VREKNMWP-----------VAGIDEVGRGALAGPVVVAAIILDPN-----NIPFGINDSK 61
           +R +NM+            +AG DEVGRG LAGP+V AA++LD +     N+   INDSK
Sbjct: 62  IRVRNMYEFDKKYIKSGTYLAGADEVGRGPLAGPIVAAAVVLDLDIINDENLILRINDSK 121

Query: 62  KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           KIS + REEL + I   A+  SI   S + ID+  I     + +  +V NL+V P   L 
Sbjct: 122 KISFEVREELSKIIKERAVSYSIQEISSEEIDEKGIAWCNNEVLKRSVCNLKVDPDLVLS 181

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG  I        F V+KGD+ S SIA ASIIAKV RD LM    KKYP+Y F+ ++GY 
Sbjct: 182 DGYKIKNCTINNEF-VVKGDAKSASIACASIIAKVYRDNLMIEYSKKYPEYMFNKNMGYG 240

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           T +H + IK+ G + IHR +F  L+N+
Sbjct: 241 TKEHIEAIKKFGCTKIHRKSF--LKNI 265


>gi|253996523|ref|YP_003048587.1| Ribonuclease H [Methylotenera mobilis JLW8]
 gi|253983202|gb|ACT48060.1| Ribonuclease H [Methylotenera mobilis JLW8]
          Length = 199

 Score =  134 bits (337), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 79/200 (39%), Positives = 120/200 (60%), Gaps = 20/200 (10%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII- 81
           M  + G+DE GRG LAG V  AA+ILDP     G+ DSKK+S KKR+ L  +I + A+  
Sbjct: 1   MQLICGVDEAGRGPLAGAVYAAAVILDPAKPIHGLADSKKLSEKKRDALALEIKTHALAW 60

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVE-------------NLQVIPRSALIDGRSIPE- 127
            ++ ++ + ID  NI +A+L A+  A+E             N+Q++ +   +DG   P+ 
Sbjct: 61  GVAHSTVEEIDAINILQASLLAMQRAIESIQNSQAVQASLTNMQLLVQ---VDGNKCPKI 117

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            LPC+A  ++KGDS   +I+AASI+AK  RD  +    ++YP YGF  H GYPTA H  +
Sbjct: 118 SLPCEA--IVKGDSKVQAISAASILAKTARDAALYELDQQYPMYGFAQHKGYPTAAHMAL 175

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           +++ G S +HR ++ P+R L
Sbjct: 176 LRQHGVSPVHRRSYAPVRAL 195


>gi|237737692|ref|ZP_04568173.1| ribonuclease HII [Fusobacterium mortiferum ATCC 9817]
 gi|229419572|gb|EEO34619.1| ribonuclease HII [Fusobacterium mortiferum ATCC 9817]
          Length = 206

 Score =  134 bits (337), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 81/181 (44%), Positives = 109/181 (60%), Gaps = 4/181 (2%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISI 83
            + G+DE GRG LAG VV AA+ L   +     INDSKK++ KKRE+L++ I  +  + I
Sbjct: 16  EIIGVDEAGRGPLAGSVVAAAVKLKRYSEELQEINDSKKLTEKKREKLFDIIMENFEVGI 75

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS---ALIDGRSIPEDLPCQAFAVIKGD 140
             AS Q ID+ NI  AT  A+  A+E L     +    L+DG     +   +   +IKGD
Sbjct: 76  GIASVQEIDELNILNATFLAMRRAIEELDKKTNTDVLVLVDGNFKIREYIGKQEPIIKGD 135

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           + SLSIAAASIIAKVTRDR +    KKYP+Y F+ H GY T  H++ + + G + IHR T
Sbjct: 136 AKSLSIAAASIIAKVTRDRQLVEEGKKYPEYHFEKHKGYGTKAHREALLQYGVTPIHRKT 195

Query: 201 F 201
           F
Sbjct: 196 F 196


>gi|297626589|ref|YP_003688352.1| ribonuclease HII [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922354|emb|CBL56926.1| Ribonuclease HII [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 211

 Score =  134 bits (336), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 75/195 (38%), Positives = 113/195 (57%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREELY 72
           E  +      PVAG DE GRGA AGP+V AA+IL  DP +    ++DSK ++ ++RE  +
Sbjct: 11  EQALAASGFGPVAGADEAGRGACAGPLVAAAVILSEDPQDHIEDLHDSKTLTARRRERAF 70

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           ++I + A+  S+        D+  + +A L  +  A+  L   P  AL DG ++   LP 
Sbjct: 71  DQIKAHALSWSVVCVGPAECDRLGMQEADLQGLRRALLRLDPSPGFALTDGFAVA-GLPV 129

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               + KGD +   ++AASI+AKVTRDRLM  A +++P YGF+ H GY T  HQ+ ++  
Sbjct: 130 PGLGMWKGDRVCACVSAASIVAKVTRDRLMVRAAQQFPVYGFEIHKGYATKLHQERLEAL 189

Query: 192 GPSCIHRLTFRPLRN 206
           GPS IHR ++  +R 
Sbjct: 190 GPSAIHRRSYANVRR 204


>gi|329768911|ref|ZP_08260338.1| ribonuclease HII [Gemella sanguinis M325]
 gi|328836628|gb|EGF86286.1| ribonuclease HII [Gemella sanguinis M325]
          Length = 175

 Score =  134 bits (336), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 110/167 (65%), Gaps = 2/167 (1%)

Query: 42  VVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKAT 100
           + AA+IL  ++   G+NDSKK+S KKREELY+KI + A+  +I   +++ I+K+NI+ A 
Sbjct: 1   MAAAVILKKDSYFEGLNDSKKLSEKKREELYDKIRNEAVAYAICEVNNEEIEKYNIYNAA 60

Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160
             A+  AVE L V P   LID     E+ P   ++++KGD  S+SIAAAS+IAKV RD L
Sbjct: 61  RIAMQRAVEKLDVKPDFLLIDAMPF-ENYPIPNYSMVKGDEKSVSIAAASVIAKVYRDNL 119

Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           M+    KYP Y F+++ GY T KH + +++ G + IHR  F P++++
Sbjct: 120 MKKYASKYPYYDFENNAGYGTKKHLEGLRKYGITPIHRRDFEPIKSM 166


>gi|313201207|ref|YP_004039865.1| ribonuclease h [Methylovorus sp. MP688]
 gi|312440523|gb|ADQ84629.1| Ribonuclease H [Methylovorus sp. MP688]
          Length = 188

 Score =  134 bits (336), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 76/183 (41%), Positives = 114/183 (62%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           + G+DE GRG LAG V  AA+IL+P     G+ DSKK+S KKR+ L  +I   A+  +I+
Sbjct: 6   ICGVDEAGRGPLAGAVYAAAVILNPARPIPGLADSKKLSEKKRDALTLEIKQHALAWAIA 65

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            ++ + ID  NI +A++ A+  AVE L + P   L+DG   P+ +   A A++ GDS   
Sbjct: 66  HSTVEEIDSINILQASMLAMRRAVEQLGIQPHKLLVDGLHCPQ-VSMVAEAIVDGDSKVE 124

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AK  RD+ +    ++YP YGF  H GYPTA H  ++ E G S +HR ++ P+
Sbjct: 125 AISAASILAKTARDKELYALDQQYPHYGFAKHKGYPTAFHMAMLIEHGVSPVHRRSYAPV 184

Query: 205 RNL 207
           + L
Sbjct: 185 KKL 187


>gi|161870870|ref|YP_001600044.1| ribonuclease HII [Neisseria meningitidis 053442]
 gi|189043631|sp|A9M3R5|RNH2_NEIM0 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|161596423|gb|ABX74083.1| ribonuclease HII [Neisseria meningitidis 053442]
          Length = 194

 Score =  134 bits (336), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 109/184 (59%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
            AG+DE GRG L G V  AA+IL +  ++P G+ DSKK+S KKR+ L E I   A     
Sbjct: 5   TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKEQAAAWYV 63

Query: 85  SA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +A + + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  
Sbjct: 64  AAATPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLDIPAEAVVKGDSKI 123

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           + I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P
Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183

Query: 204 LRNL 207
           +RNL
Sbjct: 184 VRNL 187


>gi|254670416|emb|CBA05987.1| Ribonuclease HII [Neisseria meningitidis alpha153]
          Length = 194

 Score =  134 bits (336), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 110/184 (59%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
            AG+DE GRG L G V  AA+IL +  ++P G+ DSKK+S KKR+ L E I + A     
Sbjct: 5   TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKNQAAAWHV 63

Query: 85  SA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +A + + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  
Sbjct: 64  AAATPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKI 123

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           + I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P
Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183

Query: 204 LRNL 207
           +RNL
Sbjct: 184 VRNL 187


>gi|300870469|ref|YP_003785340.1| ribonuclease HII [Brachyspira pilosicoli 95/1000]
 gi|300688168|gb|ADK30839.1| ribonuclease HII (RNase HII) [Brachyspira pilosicoli 95/1000]
          Length = 221

 Score =  134 bits (336), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 84/188 (44%), Positives = 115/188 (61%), Gaps = 9/188 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAII--LDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
           + GIDEVGRG+L G V   A+I  LD + I    NDSKK++ KKREELY+ I   A+  S
Sbjct: 29  ICGIDEVGRGSLFGEVTACAVIMPLDDDIIKEA-NDSKKLTAKKREELYKIIIQKALSYS 87

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           + S +   IDK NI+ AT  A+  AVE L + P   LID   I  D   +  ++IKGD  
Sbjct: 88  VYSVAANTIDKINIYNATKLAMLKAVEGLSIKPDILLIDAMKI--DTEIKQESIIKGDLK 145

Query: 143 SLSIAAASIIAKVTRDRLMRI---AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           S SIA ASI+AKV+RD+ M I    +K+Y  Y    + GY T +H + IK+ G S +HRL
Sbjct: 146 SYSIACASIVAKVSRDKAMNILSEKNKEYDKYKISKNKGYGTKEHIEAIKKYGASDLHRL 205

Query: 200 TFRPLRNL 207
           +F P++++
Sbjct: 206 SFEPIKSI 213


>gi|149926572|ref|ZP_01914833.1| Ribonuclease H [Limnobacter sp. MED105]
 gi|149824935|gb|EDM84149.1| Ribonuclease H [Limnobacter sp. MED105]
          Length = 218

 Score =  134 bits (336), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 79/201 (39%), Positives = 122/201 (60%), Gaps = 9/201 (4%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E++A   + ++  V G+DE GRG L GPVV  A +L+  N   G+  SK +S KKR+ L 
Sbjct: 9   EIQAYAEQHSL-QVIGVDEAGRGPLCGPVVAGAALLNQPNTIDGLACSKTLSAKKRDSLE 67

Query: 73  EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVE----NLQVIPRSALI--DGRSI 125
             I  +A   +++ A+ + ID+ NI +A+L A++ AV+       + P+  LI  DG  +
Sbjct: 68  TAIRRNAKACAVAHATVEEIDRLNILQASLLAMWRAVDLVLDQTGLKPKQCLIAVDGNKL 127

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P+  P QA AV+KGD+   +I+AASI+AKV RD   +    ++P Y  D H+GYPTA+H 
Sbjct: 128 PK-WPYQAIAVVKGDTKIPAISAASILAKVARDEWCKTHALQFPQYELDIHMGYPTARHM 186

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
            ++ E G + +HR +FRP+R 
Sbjct: 187 ALLLEHGATQLHRKSFRPVRE 207


>gi|325133106|gb|EGC55778.1| ribonuclease HII [Neisseria meningitidis M6190]
          Length = 194

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 110/184 (59%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
            AG+DE GRG L G V  AA+IL +  ++P G+ DSKK+S KKR+ L E I + A     
Sbjct: 5   TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKNQAAAWHV 63

Query: 85  SA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +A + + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  
Sbjct: 64  AAATPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHLGIPAEAVVKGDSKI 123

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           + I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P
Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183

Query: 204 LRNL 207
           +RNL
Sbjct: 184 VRNL 187


>gi|56750670|ref|YP_171371.1| ribonuclease HII [Synechococcus elongatus PCC 6301]
 gi|81299688|ref|YP_399896.1| ribonuclease HII [Synechococcus elongatus PCC 7942]
 gi|81596478|sp|Q5N4B8|RNH2_SYNP6 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|97189413|sp|Q31PW0|RNH2_SYNE7 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|56685629|dbj|BAD78851.1| ribonuclease HII [Synechococcus elongatus PCC 6301]
 gi|81168569|gb|ABB56909.1| RNase HII [Synechococcus elongatus PCC 7942]
          Length = 215

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/189 (43%), Positives = 111/189 (58%), Gaps = 6/189 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI-PF---GINDSKKISHKKREELYEKITSSAII 81
           VAG+DEVGRG L GPVV AA+IL    I P    G+ DSK++S ++R++LY  I   A+ 
Sbjct: 21  VAGVDEVGRGCLFGPVVTAAVILPETAIAPLQQAGVTDSKRLSQRQRQQLYPLICEVALA 80

Query: 82  S-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
           +    AS   I++ NI +AT  A+  A+  L       LIDG      L      VI+GD
Sbjct: 81  TGWGLASVAEIERWNILQATFLAMRRAIAKLDRPISRCLIDGNQQVPQLTYPQTTVIQGD 140

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
              ++IAAASI+AKV RDRL+    ++YP Y    H GY TA+H+Q I + GP+ +HR+ 
Sbjct: 141 RHCITIAAASILAKVWRDRLIERLDERYPGYALGRHKGYGTAQHRQAILQLGPTPLHRIR 200

Query: 201 F-RPLRNLS 208
           F R LR  S
Sbjct: 201 FLRSLRQPS 209


>gi|319950993|ref|ZP_08024863.1| ribonuclease HII [Dietzia cinnamea P4]
 gi|319435336|gb|EFV90586.1| ribonuclease HII [Dietzia cinnamea P4]
          Length = 235

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/198 (40%), Positives = 119/198 (60%), Gaps = 4/198 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKRE 69
             LEA +  + + PVAG+DE GRG+ AGP+VVAA +L     P    ++DSKK++   R+
Sbjct: 28  LALEAALTRRGLGPVAGVDEAGRGSCAGPLVVAACVLGDRLHPELADLDDSKKLTAAARD 87

Query: 70  ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            L++ +   A  +S+       ID   IH+  ++ +  AV  L   P   L DG ++ + 
Sbjct: 88  RLHDAVLRRARAVSVVVIEPDRIDARGIHRCNIEGMRRAVAALDPRPGFVLTDGFAV-DG 146

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L CQ+ AVI GD++  SIAAAS++AKVTRDR+M     +YP YGF +H GY T  H + I
Sbjct: 147 LGCQSTAVIGGDAVVASIAAASVLAKVTRDRIMVDLDSRYPGYGFAAHKGYSTTGHARAI 206

Query: 189 KEKGPSCIHRLTFRPLRN 206
           ++ GPS IHR+++  +R 
Sbjct: 207 EQLGPSDIHRMSYANVRR 224


>gi|258511350|ref|YP_003184784.1| Ribonuclease H [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478076|gb|ACV58395.1| Ribonuclease H [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 216

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/185 (41%), Positives = 113/185 (61%), Gaps = 8/185 (4%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI-I 81
           AG+DEVGRG +AGPVV A+++L      +     + DSK++    RE L ++I + A+ +
Sbjct: 21  AGVDEVGRGCIAGPVVAASVVLPLERETYEELKDVMDSKQLKPDVRERLADRIRAKALAV 80

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLPCQAFAVIKGD 140
            I  AS + ID+ NI +AT  A+  +++ L +    AL+DG R     +P     V+ GD
Sbjct: 81  GIGMASPEEIDRLNILQATQLAMKRSLDALDIPVDLALVDGNRGFRHRVPV--LPVVDGD 138

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           + SL +AAAS+IAKV RDRLM    + +P YGF  HVGY T  H + ++  GPS +HRL+
Sbjct: 139 ARSLLVAAASVIAKVFRDRLMAKLDEGFPGYGFSEHVGYGTRAHLEALRRLGPSVVHRLS 198

Query: 201 FRPLR 205
           F P+R
Sbjct: 199 FAPVR 203


>gi|258406140|ref|YP_003198882.1| Ribonuclease H [Desulfohalobium retbaense DSM 5692]
 gi|257798367|gb|ACV69304.1| Ribonuclease H [Desulfohalobium retbaense DSM 5692]
          Length = 197

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/179 (43%), Positives = 107/179 (59%), Gaps = 4/179 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DE GRG LAGPVV AA+IL       G+ DSK++S K+RE L   I   A+  ++ 
Sbjct: 7   VAGVDEAGRGCLAGPVVAAAVILPKTWDLPGMTDSKQLSAKRREVLAGAIKEQALYWALG 66

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLPCQAFAVIKGDSIS 143
                 ID  NI ++T  A+  A+E L  +P    IDG + +P  LP ++  ++ GDS  
Sbjct: 67  VVWPPVIDTINILQSTKRAMLTAIERLGHVPDMVYIDGNQPVPTSLPQKS--IVGGDSSE 124

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             IAAASI+AK  RDR+M    ++YP YGF  H GY T  H + ++  GPS +HRLTF+
Sbjct: 125 PCIAAASIVAKTFRDRVMVSLERRYPGYGFARHKGYGTRAHLEALRRLGPSRMHRLTFK 183


>gi|86142121|ref|ZP_01060645.1| ribonuclease HII [Leeuwenhoekiella blandensis MED217]
 gi|85831684|gb|EAQ50140.1| ribonuclease HII [Leeuwenhoekiella blandensis MED217]
          Length = 200

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/185 (41%), Positives = 108/185 (58%), Gaps = 1/185 (0%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +N+    GIDE GRG LAGPV  AA+IL  +     + DSK ++HK RE L   I   A+
Sbjct: 8   QNILTECGIDEAGRGCLAGPVTAAAVILPQSFKNKILTDSKLLTHKSRELLRPVIEQEAL 67

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
              I+    + ID+ NI  A++ A++ A+E L+  P+  L+DG        C    +IKG
Sbjct: 68  AFGIAHVFPEEIDEINILNASIKAMHLAIEKLKQQPQHILVDGNRFKPYKECSHECIIKG 127

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DS  LSIAAAS++AK  RDR M   H ++P Y +  + GYPT +H+Q IKE G +  HR 
Sbjct: 128 DSKFLSIAAASVLAKTERDRYMTDLHMQFPHYNWKKNKGYPTKEHRQAIKEFGITSHHRK 187

Query: 200 TFRPL 204
           +F+ L
Sbjct: 188 SFKQL 192


>gi|300783884|ref|YP_003764175.1| ribonuclease HII [Amycolatopsis mediterranei U32]
 gi|299793398|gb|ADJ43773.1| ribonuclease HII [Amycolatopsis mediterranei U32]
          Length = 280

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/201 (37%), Positives = 114/201 (56%), Gaps = 4/201 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKRE 69
           + L+  +  + + PVAG+DE G GA AGP+VVAA +L   +      + DSK ++ K R+
Sbjct: 8   WGLQGALDRRGLGPVAGVDEAGAGACAGPLVVAACVLKQGDAAKLIELTDSKMMTAKARD 67

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            +Y+ + + A+  S+     + +D + I    L+ +  A   L+V P   L DG  +P  
Sbjct: 68  RVYDLVLARAVDYSVIVIPTEEVDLYGIRVMNLEGMRRAAAALRVQPGYVLTDGFRVP-G 126

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L     AVIKGD     IAAAS++AKVTRDR+M   H  +P YGFD H GY T+ H   +
Sbjct: 127 LTAPNTAVIKGDRSVACIAAASVLAKVTRDRIMAGYHDDFPHYGFDVHKGYSTSDHLAAL 186

Query: 189 KEKGPSCIHRLTFRPLRNLSV 209
           +E GPS +HR ++  +  ++V
Sbjct: 187 REHGPSDVHRWSYTNVATVAV 207


>gi|16803313|ref|NP_464798.1| ribonuclease HII [Listeria monocytogenes EGD-e]
 gi|47097416|ref|ZP_00234965.1| ribonuclease HII [Listeria monocytogenes str. 1/2a F6854]
 gi|254829970|ref|ZP_05234625.1| ribonuclease HII [Listeria monocytogenes 10403S]
 gi|254898562|ref|ZP_05258486.1| ribonuclease HII [Listeria monocytogenes J0161]
 gi|254911948|ref|ZP_05261960.1| ribonuclease HII [Listeria monocytogenes J2818]
 gi|254936274|ref|ZP_05267971.1| rnhB [Listeria monocytogenes F6900]
 gi|284801658|ref|YP_003413523.1| hypothetical protein LM5578_1411 [Listeria monocytogenes 08-5578]
 gi|284994800|ref|YP_003416568.1| hypothetical protein LM5923_1364 [Listeria monocytogenes 08-5923]
 gi|38258623|sp|Q8Y7K4|RNH2_LISMO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|16410689|emb|CAC99351.1| rnhB [Listeria monocytogenes EGD-e]
 gi|47014215|gb|EAL05199.1| ribonuclease HII [Listeria monocytogenes str. 1/2a F6854]
 gi|258608863|gb|EEW21471.1| rnhB [Listeria monocytogenes F6900]
 gi|284057220|gb|ADB68161.1| hypothetical protein LM5578_1411 [Listeria monocytogenes 08-5578]
 gi|284060267|gb|ADB71206.1| hypothetical protein LM5923_1364 [Listeria monocytogenes 08-5923]
 gi|293589909|gb|EFF98243.1| ribonuclease HII [Listeria monocytogenes J2818]
          Length = 261

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 118/182 (64%), Gaps = 3/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG LAGPVV AA+IL  +    GINDSK++S  KR+ L+EKI   AI I + 
Sbjct: 73  IAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALFEKIKKEAIAIGVG 132

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
              H  ID+ NI++AT  A+  A+  L   P   LID  ++P        ++IKGD+ S+
Sbjct: 133 IIEHDVIDQVNIYEATKLAMCEALNQLTPEPDFVLID--AMPLRYTEAELSLIKGDTKSI 190

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASIIAKVTRDRLM++  +KYP Y F +++GY T KH   +   G   IHR++F P+
Sbjct: 191 SIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGTKKHLLGLDTIGICPIHRMSFSPV 250

Query: 205 RN 206
           + 
Sbjct: 251 KE 252


>gi|187928381|ref|YP_001898868.1| ribonuclease HII [Ralstonia pickettii 12J]
 gi|238691815|sp|B2UBB5|RNH2_RALPJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|187725271|gb|ACD26436.1| Ribonuclease H [Ralstonia pickettii 12J]
          Length = 232

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/188 (41%), Positives = 114/188 (60%), Gaps = 11/188 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           + G+DE GRG LAGPV  AA++L+P     G+ DSK ++ +KRE LY++I   A+   ++
Sbjct: 28  LCGVDEAGRGPLAGPVTAAAVVLNPRKPIKGLADSKILTARKREALYDEIVEKALAWHVA 87

Query: 85  SASHQYIDKHNIHKATLDAIYHAVEN---LQVIPRSALIDGRSIPEDLPCQAFAV---IK 138
            A+ + ID+ NI  AT+ A+  AV+    L  +P    +DG   P+     AFAV   +K
Sbjct: 88  EATVEEIDRINILHATMLAMQRAVQGVAALGTLPDLVQVDGNRCPQ----VAFAVEAIVK 143

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD++  +I+AASI+AKVTRDR +   H ++P YGFD H GY T +H   I   G +  HR
Sbjct: 144 GDALVPAISAASILAKVTRDRQLAALHIEFPLYGFDVHAGYGTPQHLAAIDLHGVTPHHR 203

Query: 199 LTFRPLRN 206
            +F P+R 
Sbjct: 204 RSFAPVRR 211


>gi|160891452|ref|ZP_02072455.1| hypothetical protein BACUNI_03903 [Bacteroides uniformis ATCC 8492]
 gi|156858859|gb|EDO52290.1| hypothetical protein BACUNI_03903 [Bacteroides uniformis ATCC 8492]
          Length = 202

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/181 (44%), Positives = 108/181 (59%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++ K+R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPTDFKNELLNDSKQLTEKQRYTLREVIEKEALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143
            S + IDK NI  A+  A++ AV+ L V P+  LIDG    +  DLP     V+KGD   
Sbjct: 73  VSPEEIDKINILNASFLAMHRAVDQLNVRPQHLLIDGNRFKKYRDLPHTT--VVKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAASI+AK  RD  M   H++YP Y ++ + GYPT KH+  I E+G +  HRLTF  
Sbjct: 131 LSIAAASILAKTYRDDYMNRLHEEYPYYDWNRNKGYPTKKHRAAIAERGTTPYHRLTFNL 190

Query: 204 L 204
           L
Sbjct: 191 L 191


>gi|317478434|ref|ZP_07937595.1| ribonuclease HII [Bacteroides sp. 4_1_36]
 gi|316905393|gb|EFV27186.1| ribonuclease HII [Bacteroides sp. 4_1_36]
          Length = 202

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/181 (44%), Positives = 108/181 (59%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++ K+R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPTDFKNELLNDSKQLTEKQRYTLREVIEKEALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143
            S + IDK NI  A+  A++ AV+ L V P+  LIDG    +  DLP     V+KGD   
Sbjct: 73  VSPEEIDKINILNASFLAMHRAVDQLNVRPQHLLIDGNRFKKYRDLPHTT--VVKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAASI+AK  RD  M   H++YP Y ++ + GYPT KH+  I E+G +  HRLTF  
Sbjct: 131 LSIAAASILAKTYRDDYMNRLHEEYPYYDWNRNKGYPTKKHRAAIAERGTTPYHRLTFNL 190

Query: 204 L 204
           L
Sbjct: 191 L 191


>gi|126666166|ref|ZP_01737146.1| ribonuclease HII [Marinobacter sp. ELB17]
 gi|126629488|gb|EBA00106.1| ribonuclease HII [Marinobacter sp. ELB17]
          Length = 217

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/181 (44%), Positives = 110/181 (60%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+IL+P      + DSKK+S KKR +L+++I   A   S+ 
Sbjct: 19  LAGVDEVGRGPLIGAVVTAAVILNPARPIKDLADSKKLSEKKRNQLFDEIIEKATAWSLG 78

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
               + ID+ NI +AT+ A+  AVE L   P   L+DG   P D    A AV+KGD    
Sbjct: 79  RCEAEEIDRLNIFQATMVAMTRAVEGLNPQPEYVLVDGNRCP-DWRWPAAAVVKGDMRIA 137

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKVTRDR ++   + YP YG   H GYPT  H + +   G +  HR +FRP+
Sbjct: 138 AISAASILAKVTRDRELQALDQLYPGYGLAQHKGYPTTAHMEALARLGVTPQHRRSFRPV 197

Query: 205 R 205
           R
Sbjct: 198 R 198


>gi|302344951|ref|YP_003813304.1| ribonuclease HII [Prevotella melaninogenica ATCC 25845]
 gi|302149166|gb|ADK95428.1| ribonuclease HII [Prevotella melaninogenica ATCC 25845]
          Length = 200

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/181 (43%), Positives = 111/181 (61%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL P+     +NDSKK++ KKR  L E+I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPPDYQNELLNDSKKLTAKKRYALREEIERDAIAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143
            + + IDK NI  A+  A++ A++ L+V P + ++DG      +DLP     ++KGD   
Sbjct: 73  VTPEEIDKINILNASFLAMHRALDQLKVRPEAVIVDGNRFKPYQDLPSTT--IVKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAASI+AK  RD  M    ++YP Y + S++GYPT KH+Q I+E G +  HR ++  
Sbjct: 131 LSIAAASILAKTYRDDYMLSLAEEYPQYDWQSNMGYPTKKHRQAIREHGITPYHRKSYNL 190

Query: 204 L 204
           L
Sbjct: 191 L 191


>gi|284047854|ref|YP_003398193.1| Ribonuclease H [Acidaminococcus fermentans DSM 20731]
 gi|283952075|gb|ADB46878.1| Ribonuclease H [Acidaminococcus fermentans DSM 20731]
          Length = 270

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/200 (43%), Positives = 131/200 (65%), Gaps = 6/200 (3%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREEL 71
           +LE     + M  VAG DE GRG LAGP+V AA+IL P++I   G+NDSKK++  +RE L
Sbjct: 60  DLERAFWARGMDQVAGCDEAGRGPLAGPLVTAAVIL-PHSIWLPGLNDSKKVTAARREIL 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y +I   A+ +++S    + ID+ NI++A   A+   + +L+V P++A+ D  ++P ++P
Sbjct: 119 YGEILEQAVSVTVSILGPREIDRLNIYQAAKTAMTLCLTHLKVRPQAAVTD--AMPLEIP 176

Query: 131 -CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             +   ++ GDS S ++AAASIIAKVTRD LM    ++YP YGF  H GY TA+H Q I 
Sbjct: 177 GMEVEDLVHGDSRSAAVAAASIIAKVTRDHLMEDMDRQYPQYGFAKHKGYGTARHIQAIL 236

Query: 190 EKGPSCIHRLTFRPLRNLSV 209
           + GP+  HR +F PL+++ +
Sbjct: 237 DCGPTPWHRRSFEPLKSMDL 256


>gi|150390501|ref|YP_001320550.1| ribonuclease H [Alkaliphilus metalliredigens QYMF]
 gi|189043609|sp|A6TRS3|RNH2_ALKMQ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|149950363|gb|ABR48891.1| Ribonuclease H [Alkaliphilus metalliredigens QYMF]
          Length = 204

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/198 (41%), Positives = 116/198 (58%), Gaps = 9/198 (4%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
             E+E  + E+    +AG DEVGRG L G V+ A +IL    +  G+ DSKK+S K+REE
Sbjct: 3   RLEIENQLWEEGYESIAGCDEVGRGCLFGSVLAATVILPKGLLIEGVKDSKKLSPKRREE 62

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVI------PRSALIDGR 123
           LYE I  +AI + +   S + ID+ NI +A+  A+  +V +L  I      P   L+D  
Sbjct: 63  LYEVIKKNAIAMGVGIISAEVIDQINIRQASRLAMKKSVLSLTTIDGESKIPDYILVDAE 122

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           +I  D+     A+IKGD  S  IAAASI+AKV RDRL     ++YP+YG   H GY T  
Sbjct: 123 NI--DIAIPQSAIIKGDDRSQGIAAASIVAKVIRDRLCIRWDEEYPNYGIAQHKGYGTKL 180

Query: 184 HQQVIKEKGPSCIHRLTF 201
           H++ + + GPS +HR +F
Sbjct: 181 HREALLKYGPSELHRRSF 198


>gi|113474350|ref|YP_720411.1| ribonuclease HII [Trichodesmium erythraeum IMS101]
 gi|123352730|sp|Q118Y6|RNH2_TRIEI RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|110165398|gb|ABG49938.1| RNase HII [Trichodesmium erythraeum IMS101]
          Length = 211

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/183 (46%), Positives = 109/183 (59%), Gaps = 7/183 (3%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNI-----PFGINDSKKISHKKREELYEKITSSAI- 80
           AG+DEVGRGAL GPVV AA+IL P ++       G+ DSKK++ K+R  L   I + A  
Sbjct: 20  AGVDEVGRGALFGPVVAAAVIL-PEDVLDDLASTGVTDSKKLTEKRRCHLASLIRTVAWD 78

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             I  AS + ID+ NI KA+L A+  AV  L++ P   L+DG     DL      V+KGD
Sbjct: 79  CQIGIASVREIDRLNILKASLLAMKRAVLRLKLRPDLVLVDGNQEIRDLFIPQRTVVKGD 138

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S  L+IAAASI+AKV RD L+    KKYP Y    + GY T KH+Q I   G S  HRL+
Sbjct: 139 SKCLAIAAASIVAKVWRDTLIMRLAKKYPVYDLTKNKGYGTKKHKQGIINYGVSPQHRLS 198

Query: 201 FRP 203
           F P
Sbjct: 199 FSP 201


>gi|218131835|ref|ZP_03460639.1| hypothetical protein BACEGG_03456 [Bacteroides eggerthii DSM 20697]
 gi|317474549|ref|ZP_07933823.1| ribonuclease HII [Bacteroides eggerthii 1_2_48FAA]
 gi|217986138|gb|EEC52477.1| hypothetical protein BACEGG_03456 [Bacteroides eggerthii DSM 20697]
 gi|316909230|gb|EFV30910.1| ribonuclease HII [Bacteroides eggerthii 1_2_48FAA]
          Length = 199

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/179 (43%), Positives = 106/179 (59%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++ K+R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + IDK NI  A+  A++ AV+ LQ+ P+  LIDG    +        V+KGD   LS
Sbjct: 73  VSPEEIDKINILNASFLAMHRAVDRLQLRPQHLLIDGNRFKKYRELPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H++YP Y ++ + GYPT KH+  I E+G S  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPYYDWNHNKGYPTKKHRAAIAERGTSPYHRMTFNLL 191


>gi|294508407|ref|YP_003572465.1| Ribonuclease HII [Salinibacter ruber M8]
 gi|294344735|emb|CBH25513.1| Ribonuclease HII [Salinibacter ruber M8]
          Length = 200

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/196 (40%), Positives = 110/196 (56%), Gaps = 9/196 (4%)

Query: 20  EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E+ +W      VAG+DE GRG LAGPVV AA+I+ P      I DSK +S  +R +    
Sbjct: 5   ERRLWADGYERVAGLDEAGRGCLAGPVVAAAVIMPPQVEITAIQDSKALSEGQRLDARAT 64

Query: 75  ITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL---P 130
           I   A+  SI+  S   ID  NI +A L+A+  A    +  P   L+DG     +L   P
Sbjct: 65  IEDEAVAASIARCSPTEIDDCNILQAALEAMRRAASGCRPPPDFVLVDGNQWDRNLVDAP 124

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                V+KGD+ S SIAAASI+AK  RD LMR  H+ +P+Y + S+VGYPT +H   ++E
Sbjct: 125 WPHETVVKGDAKSQSIAAASILAKTERDALMRDLHEAHPEYDWASNVGYPTQQHYDALRE 184

Query: 191 KGPSCIHRLTFRPLRN 206
            G +  HR +F   R+
Sbjct: 185 HGATPHHRQSFTLFRD 200


>gi|126655902|ref|ZP_01727341.1| Ribonuclease HII/HIII [Cyanothece sp. CCY0110]
 gi|126623381|gb|EAZ94086.1| Ribonuclease HII/HIII [Cyanothece sp. CCY0110]
          Length = 199

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/182 (43%), Positives = 111/182 (60%), Gaps = 5/182 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI- 80
           +AG+DEVGRG L GPVV AA++L+ ++IP     G+ DSKK+S K+RE L   I + AI 
Sbjct: 13  IAGVDEVGRGCLFGPVVAAAVVLEKSSIPQLQEIGVKDSKKLSAKRRETLATAIKNRAIS 72

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             IS AS Q ID+ NI  A+L A+  ++  L + P+  LIDG     +L      +I GD
Sbjct: 73  YHISYASSQEIDRLNILNASLLAMKRSITKLSITPQLCLIDGNQKVPNLTIPQETIIGGD 132

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
             S  IAAASI+AKV RD+L+     KYP Y  +++ GY T KH+  +++ G    HR +
Sbjct: 133 KSSPLIAAASILAKVWRDQLIVRLAAKYPHYDLENNKGYGTKKHRLALQQYGLCFHHRRS 192

Query: 201 FR 202
           F+
Sbjct: 193 FK 194


>gi|296116694|ref|ZP_06835304.1| ribonuclease HII [Gluconacetobacter hansenii ATCC 23769]
 gi|295976906|gb|EFG83674.1| ribonuclease HII [Gluconacetobacter hansenii ATCC 23769]
          Length = 235

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/188 (41%), Positives = 113/188 (60%), Gaps = 6/188 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISHKKREELYEKITS--SAI 80
           VAG+DEVGRG LAGPVV AA++     P+++   ++DSKK+    R   + ++ +  S +
Sbjct: 14  VAGVDEVGRGPLAGPVVAAAVMFMHGVPDDLASRLDDSKKLRPAARLRAFAELRALPSVL 73

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
           I +++AS   I++HNI +A   A+  AV  L   P   L+DG + P D  C    V+ GD
Sbjct: 74  IGVAAASVTEIERHNILRAAHIAMQRAVARLPQRPDLVLVDGNATP-DFGCATQCVVGGD 132

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S SLSIAAASI+AKV RDRLM     ++P YG++ + GY TA H+  +   G +  HR  
Sbjct: 133 SKSLSIAAASIVAKVIRDRLMERLSVRWPGYGWERNAGYGTAAHRAALCAVGITPHHRAA 192

Query: 201 FRPLRNLS 208
           F  +R L+
Sbjct: 193 FGTVRALA 200


>gi|124267155|ref|YP_001021159.1| ribonuclease HII [Methylibium petroleiphilum PM1]
 gi|189043524|sp|A2SH85|RNH22_METPP RecName: Full=Ribonuclease HII 2; Short=RNase HII 2
 gi|124259930|gb|ABM94924.1| RNase HII [Methylibium petroleiphilum PM1]
          Length = 217

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/183 (44%), Positives = 114/183 (62%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84
           +AG+DE GRG LAGPVV AA+ILD      G+ DSK +S + RE L+++I + A+   I+
Sbjct: 30  LAGVDEAGRGPLAGPVVAAAVILDDVQPIRGLGDSKVLSERVRERLFDEIRAKALCCCIA 89

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID  NI +ATL A+  AV  L++ P   L+DG  +P  L   A A++KGD+   
Sbjct: 90  EASVEEIDTLNILQATLLAMRRAVAGLRLRPNKVLVDGNRLPV-LQVPAEAIVKGDAKVA 148

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKV RDRL    H+ +P YGF  H GYPT  H   ++  G    HR +F P+
Sbjct: 149 AISAASILAKVHRDRLCLALHEAHPQYGFAGHKGYPTPDHLAALRVHGACGAHRRSFAPV 208

Query: 205 RNL 207
           R +
Sbjct: 209 REV 211


>gi|172038236|ref|YP_001804737.1| ribonuclease HII [Cyanothece sp. ATCC 51142]
 gi|171699690|gb|ACB52671.1| ribonuclease HII [Cyanothece sp. ATCC 51142]
          Length = 202

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/182 (43%), Positives = 108/182 (59%), Gaps = 5/182 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI- 80
           +AG+DEVGRG L GPVV AA++ +   I      G+ DSK++S K+RE L  +I + AI 
Sbjct: 19  MAGVDEVGRGCLFGPVVAAAVVFNFTTIAQLQDIGVKDSKQLSVKRRESLVTEIKNRAIS 78

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             IS AS Q ID+ NI  A+L A+  ++  L V P   LIDG     DL      +I GD
Sbjct: 79  YQISYASSQEIDRLNILNASLLAMKRSITKLSVTPELCLIDGNQKIPDLTIAQETIIGGD 138

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
             S  IAAASI+AKV RD+L+     KYP Y  +++ GY T KH+  +++ GP   HR +
Sbjct: 139 RTSPIIAAASILAKVWRDQLIVRLAAKYPHYDLENNKGYGTKKHRMGLQQYGPCFHHRRS 198

Query: 201 FR 202
           F+
Sbjct: 199 FK 200


>gi|219118288|ref|XP_002179922.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408975|gb|EEC48908.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 189

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/192 (47%), Positives = 118/192 (61%), Gaps = 17/192 (8%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK-REELYEKITSS-----A 79
           V G+DE GRG LAGPVV AA ++ P +I  GI DSK ++ +  REELYEKI SS     A
Sbjct: 3   VIGVDEAGRGPLAGPVVAAAAVV-PIDI-VGIADSKTLTRESVREELYEKIVSSDNVRWA 60

Query: 80  IISISSASHQYIDKHNIHKATLDAIY---HAVENLQVIPRSA---LIDGRSIPEDLPCQA 133
           +  I SA    ID+ NI +ATL  +     AV  +  +P +A   L+DG  +P+ +  + 
Sbjct: 61  VAVIDSAR---IDEVNILQATLQGMRLAASAVAGISEVPDNAFYALLDGNRLPKKMAMRV 117

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             ++KGDS   SIAAASI+AKVTRDRLM    K YP+Y    H GYPTA H   +++ G 
Sbjct: 118 ETMVKGDSREYSIAAASILAKVTRDRLMHGYDKLYPEYNLAQHKGYPTAAHMDAVRKYGA 177

Query: 194 SCIHRLTFRPLR 205
           S IHR TF PL+
Sbjct: 178 SPIHRRTFAPLK 189


>gi|77919812|ref|YP_357627.1| ribonuclease HII [Pelobacter carbinolicus DSM 2380]
 gi|97189130|sp|Q3A2F0|RNH2_PELCD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|77545895|gb|ABA89457.1| RNase HII [Pelobacter carbinolicus DSM 2380]
          Length = 209

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/195 (45%), Positives = 120/195 (61%), Gaps = 4/195 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELY 72
            E  +  +    +AGIDE GRG LAGPVV AA++L P  ++P G+NDSKKIS K RE+L+
Sbjct: 15  FEQRLSRQGYRRIAGIDEAGRGPLAGPVVAAAVVLPPVFDLP-GLNDSKKISAKLREKLF 73

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I   A+   I  AS Q +D  N+ +ATL A+  A++ L       L+DG + P  LP 
Sbjct: 74  PQIRRQALDYGIGLASAQEVDGLNVLQATLLAMRRALDRLAQPADYLLVDGIT-PVPLPL 132

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               + +GDS SLSIAAAS++AKV RDRLM     ++P+YGF  H GY +A H+  I   
Sbjct: 133 PQKTLKQGDSRSLSIAAASVLAKVVRDRLMTTYDARFPEYGFAGHKGYGSAAHRAAIARL 192

Query: 192 GPSCIHRLTFRPLRN 206
           GP  +HR TFR +R 
Sbjct: 193 GPCPLHRATFRGVRE 207


>gi|331703424|ref|YP_004400111.1| ribonuclease H II [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328801979|emb|CBW54133.1| Ribonuclease H II [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 207

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/202 (37%), Positives = 122/202 (60%), Gaps = 2/202 (0%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           +R  F+ + +  + N+  ++G DE GRG LAGP+VVA++IL P+     I DSKK++ K 
Sbjct: 3   DRKLFD-DQIKLDHNITYLSGSDEAGRGCLAGPLVVASVILKPDYFNPLIKDSKKLNPKT 61

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R+ L+++I  + +   I   S + +D+ N  +A+L      + NL++ P   LIDG    
Sbjct: 62  RQILFDEIIKNCLDYQIIVISSKQVDELNPLQASLLGFKTTISNLKITPDLGLIDGNQNI 121

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
                +  ++IKGD  S SIA +SI+AKVTRD+++    + YP+YGF SH GY T +H  
Sbjct: 122 NLENIKTLSIIKGDDKSFSIACSSILAKVTRDKILDEYDQIYPNYGFKSHKGYCTKQHLL 181

Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208
            I++ G   IHR +++P++ +S
Sbjct: 182 AIQKYGVLDIHRKSYKPIKKIS 203


>gi|269792962|ref|YP_003317866.1| Ribonuclease H [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100597|gb|ACZ19584.1| Ribonuclease H [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 188

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/182 (45%), Positives = 114/182 (62%), Gaps = 7/182 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI- 80
           VAG+DE GRG LAGPVV AA +L  +     +  G+ DSK +S ++RE L+E I S  + 
Sbjct: 3   VAGVDEAGRGPLAGPVVAAAAVLTRDQARELMALGLKDSKALSPRRREALFEAIRSLNVQ 62

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-EDLPCQAFAVIKG 139
               +AS   ID+ ++ KA+L A+  AV  L V P+  L+DG S+P E L      V+KG
Sbjct: 63  WRAQAASWGRIDRTHVLKASLWAMGMAVMALPVRPQLVLVDG-SVPIEGLRIPQRCVVKG 121

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DS   SI AAS+IAKV RDR+M    + YP Y F SH GYPT +H++++ + GPS +HR 
Sbjct: 122 DSKVPSIMAASVIAKVLRDRVMLALDRLYPQYRFASHKGYPTEEHRRILSQLGPSPVHRR 181

Query: 200 TF 201
           +F
Sbjct: 182 SF 183


>gi|294668304|ref|ZP_06733408.1| hypothetical protein NEIELOOT_00217 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309758|gb|EFE51001.1| hypothetical protein NEIELOOT_00217 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 196

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/182 (45%), Positives = 108/182 (59%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG L G V  AA+IL P+    G+ DSKK+S KKR+ L E+I   A+   ++S
Sbjct: 7   AGVDEAGRGPLVGSVFAAAVILPPDYDLAGLADSKKLSEKKRDALAEEIRRQAVGWCVAS 66

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A    I + NI  A + A+  AVE L V P+   IDG  +PE L  +A AV+KGD    +
Sbjct: 67  ADVAEIAELNILHAAMLAMRRAVEGLAVPPQKVWIDGNRVPEGLAVEAEAVVKGDDKIAA 126

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AK  RD  M    ++YP YGF+ H GY TA H   +K+ G    HR  F P+R
Sbjct: 127 ISAASILAKTARDAEMYALAERYPQYGFEKHKGYGTATHLAALKQYGALPEHRAGFAPVR 186

Query: 206 NL 207
            L
Sbjct: 187 EL 188


>gi|114331990|ref|YP_748212.1| ribonuclease H [Nitrosomonas eutropha C91]
 gi|122313303|sp|Q0AEI5|RNH2_NITEC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|114309004|gb|ABI60247.1| RNase HII [Nitrosomonas eutropha C91]
          Length = 219

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/180 (43%), Positives = 110/180 (61%), Gaps = 3/180 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84
           + G+DE GRG LAGPV  A ++LD   +  G+ DSK++S K+R  L E+I   A   +I+
Sbjct: 34  IYGVDEAGRGPLAGPVYAACVVLDSCYVINGLADSKQLSEKRRASLAEQIKQHARAWAIA 93

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA-LIDGRSIPEDLPCQAFAVIKGDSIS 143
           SAS + ID+ NI +A++ A+  AV  L  +  +  L+DG  +P+ L  +  AVI+GDS+ 
Sbjct: 94  SASVEEIDRLNILQASMLAMRRAVIELMPVSNALILVDGTHVPQ-LDYEVQAVIRGDSLV 152

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AK  RD  M   H+ YP YGFD H GYPT  H   I+  G +  HR +F P
Sbjct: 153 AEISAASILAKTARDAEMLRLHEIYPIYGFDRHKGYPTRVHLDAIRLHGITATHRKSFAP 212


>gi|254232994|ref|ZP_04926321.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium
           tuberculosis C]
 gi|124602053|gb|EAY61063.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium
           tuberculosis C]
          Length = 264

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/201 (40%), Positives = 116/201 (57%), Gaps = 10/201 (4%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE+ +    + PVAG+DEVGRGA AGP+VVAA +L P  I     ++DSKK+S + RE+L
Sbjct: 23  LESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDDSKKLSEQAREKL 82

Query: 72  YEKITSSAI----ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           +  I   A+    + I SA    +D+  +H A ++ +  AV  L V P   L DG  +P 
Sbjct: 83  FSLICRYAVAYHVVFIPSAE---VDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVP- 138

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            LP  +  VI GD+ +  IAAAS++AKV+RDR+M      +P YGF  H GY T  H + 
Sbjct: 139 GLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAHSRA 198

Query: 188 IKEKGPSCIHRLTFRPLRNLS 208
           +   GP   HR +F  +R ++
Sbjct: 199 LARLGPCPQHRYSFINVRRVA 219


>gi|78044826|ref|YP_360258.1| ribonuclease HII [Carboxydothermus hydrogenoformans Z-2901]
 gi|97182364|sp|Q3AC76|RNH2_CARHZ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|77996941|gb|ABB15840.1| ribonuclease HII [Carboxydothermus hydrogenoformans Z-2901]
          Length = 231

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/183 (38%), Positives = 114/183 (62%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG DE GRG +AGPVV A +++ P      ++DSKK+S KKRE+L+E+I +     S++
Sbjct: 40  VAGGDEAGRGPVAGPVVAAIVVIKPGIYIPEVDDSKKLSSKKREKLFEEIINLVTDWSVA 99

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
                 ID+ NI++AT  A   A+++L + P + ++D   +      +  +++K D IS 
Sbjct: 100 VVGPDLIDRLNIYQATKFAFKAALDSLSIKPEALILDALKLT-GFSGKQVSMVKADEISF 158

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           ++A ASI+AKV RD++M    K +P YGF  + GY T +H++ ++  GPS IHR +F P+
Sbjct: 159 AVACASILAKVIRDKIMEQYDKDFPGYGFKKNKGYLTREHREALELLGPSPIHRKSFEPI 218

Query: 205 RNL 207
           ++ 
Sbjct: 219 KSF 221


>gi|332799159|ref|YP_004460658.1| Ribonuclease H [Tepidanaerobacter sp. Re1]
 gi|332696894|gb|AEE91351.1| Ribonuclease H [Tepidanaerobacter sp. Re1]
          Length = 210

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/191 (46%), Positives = 116/191 (60%), Gaps = 2/191 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           ++ E  ++++    VAG+DE GRG LAGPVV AA+IL  +     + DSKKIS KKRE++
Sbjct: 14  YDRERKLKQEGFTLVAGVDEAGRGPLAGPVVAAAVILVLDTEILNLKDSKKISEKKREKV 73

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           YE I   A+  +       YID HNI  +TL A+ +AVE L V P   L+D   IP+   
Sbjct: 74  YEDIKGKAVAYAYDVIDADYIDNHNILNSTLMAMKNAVEKLPVKPEYILVDALKIPDITI 133

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            Q F VI GD+I   IAAASIIAKV RDR+MR     YP+YGF  + GY T +H   I++
Sbjct: 134 PQEF-VIHGDNICACIAAASIIAKVERDRIMRKYDLVYPEYGFIKNKGYGTKEHIDSIRK 192

Query: 191 KGPSCIHRLTF 201
            G   IHR +F
Sbjct: 193 HGICPIHRRSF 203


>gi|326382879|ref|ZP_08204569.1| ribonuclease HII [Gordonia neofelifaecis NRRL B-59395]
 gi|326198469|gb|EGD55653.1| ribonuclease HII [Gordonia neofelifaecis NRRL B-59395]
          Length = 219

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/199 (39%), Positives = 115/199 (57%), Gaps = 10/199 (5%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE  +  + + PVAG+DE GRGA AGP+VVAA +L    +     ++DSKK+S   RE L
Sbjct: 22  LEFTLARQGLGPVAGVDEAGRGACAGPLVVAACVLGAAQLKSLASLDDSKKLSEATRERL 81

Query: 72  YEKITSSAI----ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           Y  +   A+    ++I +A    +D+  +H A ++ +  AV  L V P   L DG  +P 
Sbjct: 82  YTAVVRHAVSWNVVAIPAAE---VDRLGVHVANIEGMRRAVAGLSVRPGYVLSDGFQVP- 137

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            LP  +  VI GD+ +  IAAAS++AKVTRDR+M     + P Y F  H GY TA H   
Sbjct: 138 GLPAPSLPVIGGDANAACIAAASVLAKVTRDRMMVALDAELPGYEFAVHKGYSTALHMAC 197

Query: 188 IKEKGPSCIHRLTFRPLRN 206
           +  +GPS  HR+++R +R+
Sbjct: 198 LDARGPSVEHRMSYRNVRD 216


>gi|67459453|ref|YP_247077.1| ribonuclease HII [Rickettsia felis URRWXCal2]
 gi|73917830|sp|Q4UKL5|RNH2_RICFE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|67004986|gb|AAY61912.1| Ribonuclease HII [Rickettsia felis URRWXCal2]
          Length = 193

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 122/192 (63%), Gaps = 7/192 (3%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           HFE     ++ + + VAGIDE GRG LAGPVV +A+I+D  NI  GI DSKK+S KKRE 
Sbjct: 7   HFE-----KKYHNYIVAGIDEAGRGPLAGPVVASAVIIDNTNIIPGIKDSKKLSKKKREL 61

Query: 71  LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           LYE+ITS+ + + +  SH  ID+ NI +AT  A   A  NL + P   L+DG    +D  
Sbjct: 62  LYEQITSNYVWAAAIISHIEIDEINILEATKKACSIAAANLSLKPEIVLVDGNMPFKDK- 120

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            +  ++I GD++SLSIAAASI+AKVTRDRLM     ++P Y +  + GY T +H + I  
Sbjct: 121 -RFVSMINGDNLSLSIAAASIVAKVTRDRLMLDLSTEFPQYLWHKNSGYGTKEHIEAINM 179

Query: 191 KGPSCIHRLTFR 202
            G S  HR +F+
Sbjct: 180 HGLSPYHRRSFK 191


>gi|270295437|ref|ZP_06201638.1| ribonuclease HII [Bacteroides sp. D20]
 gi|270274684|gb|EFA20545.1| ribonuclease HII [Bacteroides sp. D20]
          Length = 202

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/181 (44%), Positives = 108/181 (59%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++ K+R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPTDFKNELLNDSKQLTEKQRYTLREVIEKEALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143
            S + IDK NI  A+  A++ AV+ L V P+  LIDG    +  DLP     V+KGD   
Sbjct: 73  ISPEEIDKINILNASFLAMHRAVDQLNVRPQHLLIDGNRFKKYRDLPHTT--VVKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAASI+AK  RD  M   H++YP Y ++ + GYPT KH+  I E+G +  HRLTF  
Sbjct: 131 LSIAAASILAKTYRDDYMNRLHEEYPYYDWNRNKGYPTKKHRAAIAERGTTPYHRLTFNL 190

Query: 204 L 204
           L
Sbjct: 191 L 191


>gi|254805764|ref|YP_003083985.1| Ribonuclease HII [Neisseria meningitidis alpha14]
 gi|254669306|emb|CBA08298.1| Ribonuclease HII [Neisseria meningitidis alpha14]
          Length = 194

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 109/184 (59%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
            AG+DE GRG L G V  AA+IL +  ++P G+ DSKK+S KKR+ L E I   A     
Sbjct: 5   TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDTLAEMIKDQAAAWHV 63

Query: 85  SA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +A + + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  
Sbjct: 64  AAATPEEIASLNILHATMLAMKRAVDGLVVHPEKIFIDGNRIPEHLGIPAEAVVKGDSKI 123

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           + I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P
Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183

Query: 204 LRNL 207
           +RNL
Sbjct: 184 VRNL 187


>gi|111023503|ref|YP_706475.1| ribonuclease HII [Rhodococcus jostii RHA1]
 gi|122955111|sp|Q0S2B9|RNH2_RHOSR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|110823033|gb|ABG98317.1| ribonuclease H [Rhodococcus jostii RHA1]
          Length = 226

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 113/191 (59%), Gaps = 4/191 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREEL 71
           +E+ +    + PVAG+DE GRGA AGP+VVAA +L P   P    ++DSKK++ + REEL
Sbjct: 19  MESALVRSGLGPVAGVDEAGRGACAGPLVVAACVLAPKPYPALARLDDSKKLTERTREEL 78

Query: 72  YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  IT  A+  S+ S   + +D+  +H A ++ +  AV  L   P   L DG  +P  LP
Sbjct: 79  FPAITRLAVAWSVVSFPAEEVDRMGVHVANIEGMRRAVAGLSTTPGYVLTDGFRVP-GLP 137

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD+ +  IAAAS++AKV+RDR+M    + +P YGF  H GY T  H   +++
Sbjct: 138 APSLPVIGGDAAAACIAAASVLAKVSRDRVMVAMDETHPGYGFAIHKGYNTPAHLTALEK 197

Query: 191 KGPSCIHRLTF 201
            GP   HR ++
Sbjct: 198 LGPCPEHRRSW 208


>gi|323339885|ref|ZP_08080154.1| ribonuclease HII [Lactobacillus ruminis ATCC 25644]
 gi|323092758|gb|EFZ35361.1| ribonuclease HII [Lactobacillus ruminis ATCC 25644]
          Length = 256

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/182 (44%), Positives = 117/182 (64%), Gaps = 3/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           V GIDEVGRG LAGPV+   +IL  +     +NDSK+++ +KRE+LY  I   AI + I 
Sbjct: 73  VGGIDEVGRGPLAGPVIACCVILPHDFDLIDVNDSKQLTAEKREKLYGLILERAIDVGIG 132

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
              ++ ID+ NI++A   A+  AVE+L++ P   LID   I  D+P +   +IKGD+ S 
Sbjct: 133 CVDNRMIDRINIYEAARVAMKQAVESLRIKPEQLLIDAMQIETDIPQKK--LIKGDAKSA 190

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SI+AASI+AKV RD LM+   + YP YGF  + GY T +H   +++ GP  IHR+TF P+
Sbjct: 191 SISAASIVAKVNRDHLMQFYDRIYPGYGFSKNDGYGTKEHLAGLEKLGPCPIHRMTFEPI 250

Query: 205 RN 206
           ++
Sbjct: 251 KS 252


>gi|296139349|ref|YP_003646592.1| ribonuclease H [Tsukamurella paurometabola DSM 20162]
 gi|296027483|gb|ADG78253.1| Ribonuclease H [Tsukamurella paurometabola DSM 20162]
          Length = 228

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/196 (42%), Positives = 115/196 (58%), Gaps = 6/196 (3%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI---NDSKKISHKKREE 70
           +E+++    + PVAGIDE GRGA AGP+ VAA IL P  IP  +   +DSKK+S   RE 
Sbjct: 20  MESVLGRAGLGPVAGIDEAGRGACAGPMTVAACIL-PRKIPPSLARLDDSKKLSEIARER 78

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY +I   A+  S+ +     +D+  +H A +  +  A+  LQV P   LIDG ++P  L
Sbjct: 79  LYPEILKHAVSWSVVTIPAAEVDRLGVHVANISGMRRAIATLQVTPGYVLIDGFTVP-GL 137

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              +  VI GD+ +  IAAAS++AKVTRDR+M      Y  YGF  H GY TA H   + 
Sbjct: 138 GIPSLPVIGGDASASCIAAASVLAKVTRDRVMAELDADYDGYGFAVHKGYSTAAHMAALG 197

Query: 190 EKGPSCIHRLTFRPLR 205
           E GPS  HR+ ++ +R
Sbjct: 198 ELGPSDQHRMRYQNVR 213


>gi|138894726|ref|YP_001125179.1| ribonuclease HII [Geobacillus thermodenitrificans NG80-2]
 gi|196247655|ref|ZP_03146357.1| Ribonuclease H [Geobacillus sp. G11MC16]
 gi|166225189|sp|A4IM80|RNH2_GEOTN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|134266239|gb|ABO66434.1| Ribonuclease HII [Geobacillus thermodenitrificans NG80-2]
 gi|196212439|gb|EDY07196.1| Ribonuclease H [Geobacillus sp. G11MC16]
          Length = 259

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/182 (46%), Positives = 113/182 (62%), Gaps = 3/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AGIDE GRG LAGPVV AA+IL  +    G++DSK+++  KRE L+ +I   A+ I + 
Sbjct: 74  IAGIDEAGRGPLAGPVVAAAVILPKDAYLPGLDDSKRLTPAKREALFAQIEECAVAIGVG 133

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S   ID+ NI++AT  A+  AV  L   P   L+D  ++P  LP Q    IKGD+ S 
Sbjct: 134 IVSAAEIDEWNIYEATKQAMAKAVAALSPSPEHLLVDAMTVPCALPQQRL--IKGDANSA 191

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASIIAKVTRDR M    ++YP YGF  H+GY T +H   I+  G +  HR +F P+
Sbjct: 192 SIAAASIIAKVTRDRWMHELDRRYPQYGFARHMGYGTPEHLAAIRRYGVTDEHRRSFAPV 251

Query: 205 RN 206
           R 
Sbjct: 252 RE 253


>gi|325139084|gb|EGC61630.1| ribonuclease HII [Neisseria meningitidis ES14902]
          Length = 194

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/184 (44%), Positives = 109/184 (59%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
            AG+DE GRG   G V  AA+IL +  ++P G+ DSKK+S KKR+ L E I + A     
Sbjct: 5   TAGVDEAGRGPFVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKNQAAAWHV 63

Query: 85  SA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +A + + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  
Sbjct: 64  AAATPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHLGIPAEAVVKGDSKI 123

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           + I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P
Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183

Query: 204 LRNL 207
           +RNL
Sbjct: 184 VRNL 187


>gi|46907500|ref|YP_013889.1| ribonuclease HII [Listeria monocytogenes serotype 4b str. F2365]
 gi|226223876|ref|YP_002757983.1| ribonuclease H rnh [Listeria monocytogenes Clip81459]
 gi|254824666|ref|ZP_05229667.1| ribonuclease HII [Listeria monocytogenes FSL J1-194]
 gi|254852673|ref|ZP_05242021.1| ribonuclease HII [Listeria monocytogenes FSL R2-503]
 gi|254932410|ref|ZP_05265769.1| rnhB [Listeria monocytogenes HPB2262]
 gi|255520255|ref|ZP_05387492.1| ribonuclease HII [Listeria monocytogenes FSL J1-175]
 gi|300765309|ref|ZP_07075293.1| ribonuclease HII [Listeria monocytogenes FSL N1-017]
 gi|67461454|sp|Q720E8|RNH2_LISMF RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|259494069|sp|C1L2I1|RNH2_LISMC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|46880768|gb|AAT04066.1| ribonuclease HII [Listeria monocytogenes serotype 4b str. F2365]
 gi|225876338|emb|CAS05047.1| Putative ribonuclease H rnh [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|258605991|gb|EEW18599.1| ribonuclease HII [Listeria monocytogenes FSL R2-503]
 gi|293583967|gb|EFF95999.1| rnhB [Listeria monocytogenes HPB2262]
 gi|293593905|gb|EFG01666.1| ribonuclease HII [Listeria monocytogenes FSL J1-194]
 gi|300513992|gb|EFK41055.1| ribonuclease HII [Listeria monocytogenes FSL N1-017]
 gi|328468563|gb|EGF39563.1| ribonuclease HII [Listeria monocytogenes 1816]
 gi|328475117|gb|EGF45901.1| ribonuclease HII [Listeria monocytogenes 220]
 gi|332311718|gb|EGJ24813.1| Ribonuclease HII [Listeria monocytogenes str. Scott A]
          Length = 261

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/204 (43%), Positives = 126/204 (61%), Gaps = 5/204 (2%)

Query: 4   NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           N + E   +E +    ++    +AG+DEVGRG LAGPVV AA+IL  +    GINDSK++
Sbjct: 53  NKLEEMKQYETDLF--QQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQL 110

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           S  KR+ L+E I   AI I +    H  ID+ NI++AT  A+  A++ L   P   LID 
Sbjct: 111 SEAKRDALFETIKKEAIAIGVGIIEHDVIDQVNIYEATKLAMREALDQLTPEPDFVLID- 169

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
            ++P        ++IKGD+ S+SIAAASIIAKVTRDRLM++  +KYP Y F +++GY T 
Sbjct: 170 -AMPLRYTEAELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGTK 228

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRN 206
           KH   +   G   IHR++F P++ 
Sbjct: 229 KHLLGLDTIGICPIHRISFAPVKE 252


>gi|254828636|ref|ZP_05233323.1| rnhB [Listeria monocytogenes FSL N3-165]
 gi|258601035|gb|EEW14360.1| rnhB [Listeria monocytogenes FSL N3-165]
          Length = 261

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 117/182 (64%), Gaps = 3/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG LAGPVV AA+IL  +    GINDSK++S  KR+ L+EKI   AI I + 
Sbjct: 73  IAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALFEKIKKEAIAIGVG 132

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
              H  ID+ NI++AT  A+  A+  L   P   LID  ++P        ++IKGD+ S+
Sbjct: 133 IIEHDVIDQVNIYEATKLAMCEALNQLTPEPDFVLID--AMPLRYTEAELSLIKGDTKSI 190

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASIIAKVTRDRLM +  +KYP Y F +++GY T KH   +   G   IHR++F P+
Sbjct: 191 SIAAASIIAKVTRDRLMLMYDEKYPGYDFANNMGYGTKKHLLGLDTIGICPIHRMSFSPV 250

Query: 205 RN 206
           + 
Sbjct: 251 KE 252


>gi|194332870|ref|YP_002014730.1| ribonuclease HII [Prosthecochloris aestuarii DSM 271]
 gi|194310688|gb|ACF45083.1| Ribonuclease H [Prosthecochloris aestuarii DSM 271]
          Length = 206

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/198 (43%), Positives = 116/198 (58%), Gaps = 10/198 (5%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKKREEL 71
           E+  WP    V GIDE GRG LAGPVV AA++   +  P G    +NDSK I  ++R+EL
Sbjct: 8   EQQFWPDLQRVCGIDEAGRGPLAGPVVAAAVVFPRHFRPHGFISTLNDSKTIPPRRRKEL 67

Query: 72  YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            + I   A   +I+   H  ID+ NI +AT+ A+ +A  +L+  P   LIDG       P
Sbjct: 68  AQAIIQEAEDYAIAEVDHIEIDRINILQATMLAMNNAAGSLEHSPSLLLIDGNRFHPARP 127

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                ++KGD+   SIAAASI+AK  RD +M  A   YP+YGF+ H GYPT +H + I+ 
Sbjct: 128 VAFRTIVKGDASVFSIAAASILAKTHRDAIMTEAALLYPEYGFEKHFGYPTREHIEAIRN 187

Query: 191 KGPSCIHRLTFRPLRNLS 208
            G S IHR++FR LR L 
Sbjct: 188 HGRSPIHRMSFR-LRQLG 204


>gi|300933906|ref|ZP_07149162.1| ribonuclease HII [Corynebacterium resistens DSM 45100]
          Length = 212

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/196 (40%), Positives = 108/196 (55%), Gaps = 10/196 (5%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKRE 69
            ++EA +    + PVAG+DE GRGA  GP+ +AA IL   +IP    + DSKK++ K+RE
Sbjct: 1   MDMEAQLVAAGLGPVAGVDEAGRGACCGPISIAACILPEGDIPELARLTDSKKLTEKRRE 60

Query: 70  ELY----EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           EL+    E   S AII IS+   + IDK  I  A +  +  AV NL + P   L D   +
Sbjct: 61  ELFGVIQEVANSYAIIHISA---EEIDKLGIQHANVSGMRRAVANLDIEPGYVLTDAVQV 117

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  L      V+KGD +   I+AAS++AKV+RDR MR    +YP YG   H GY T  H 
Sbjct: 118 P-GLAQPHLPVVKGDLMVRCISAASVLAKVSRDRFMRELDHEYPGYGLAGHKGYGTKAHM 176

Query: 186 QVIKEKGPSCIHRLTF 201
             +   G +  HR T+
Sbjct: 177 DAVSLHGATPYHRYTY 192


>gi|45644754|gb|AAS73142.1| predicted ribonuclease H [uncultured marine gamma proteobacterium
           EBAC20E09]
          Length = 180

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/177 (48%), Positives = 107/177 (60%), Gaps = 5/177 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           +AG DEVGRG LAGPVV AA+IL   +IP G+ DSKKIS KKRE L + I   +  +   
Sbjct: 2   IAGTDEVGRGCLAGPVVAAAVIL-KEDIP-GLTDSKKISPKKREFLADLILEKSFFAYGV 59

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSISL 144
            S+  IDK NI  A+L A+  A+ NL V P   L+DG   P+ D+P +A  +I GDS   
Sbjct: 60  VSNNKIDKINILNASLLAMKRAILNLPVRPSMVLVDGTFKPDLDIPMRA--IIGGDSSEN 117

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +I+AASIIAKV RD LM      +P Y    + GY T KH + +K  G   IHR TF
Sbjct: 118 AISAASIIAKVYRDNLMIKYDSIFPVYDLKGNKGYGTKKHLEALKSFGHCEIHRTTF 174


>gi|312865274|ref|ZP_07725502.1| ribonuclease HII [Streptococcus downei F0415]
 gi|311099385|gb|EFQ57601.1| ribonuclease HII [Streptococcus downei F0415]
          Length = 255

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 127/201 (63%), Gaps = 9/201 (4%)

Query: 14  LEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           LEAM+  EK ++      +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKKI  K+
Sbjct: 54  LEAMLAYEKALYADGLELIAGIDEVGRGPLAGPVVAAAVILPKDCKIKGLNDSKKIPKKR 113

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
              +Y ++   A+ + I   S++ ID  NI++AT  A+  AV  L + P+  LID   + 
Sbjct: 114 HGLIYNQVMDQALAVGIGLKSNEVIDHVNIYEATKLAMLEAVGQLALRPQHLLIDAMDL- 172

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            DL     ++IKGD+ SLSIAAASI+AKVTRDRLM    +K+P Y F  + GY T  H +
Sbjct: 173 -DLEIPQTSIIKGDASSLSIAAASIVAKVTRDRLMADYDEKFPGYDFSHNAGYGTKSHLE 231

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            +K+ G S IHR +F P++++
Sbjct: 232 GLKKWGVSPIHRRSFEPVKSM 252


>gi|294789420|ref|ZP_06754657.1| ribonuclease HII [Simonsiella muelleri ATCC 29453]
 gi|294482633|gb|EFG30323.1| ribonuclease HII [Simonsiella muelleri ATCC 29453]
          Length = 201

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/182 (44%), Positives = 105/182 (57%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85
           AG+DE GRG L G V  AA+IL  +     + DSKK+S KKR++L E I + AI  SI+S
Sbjct: 11  AGVDEAGRGPLVGSVFAAAVILPAHYDLPDLTDSKKLSEKKRDKLAELIKNQAIAWSIAS 70

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           AS   I ++NI  AT+ A+  AV  L   P    IDG  +P +L   A AV+KGDS    
Sbjct: 71  ASPAEIVQYNILYATMLAMKRAVLGLNQKPEKVWIDGNRVPPELGIDAQAVVKGDSKIAQ 130

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AK  RD  M      YP YGF+ H GY TA H   +++ G    HR  F P++
Sbjct: 131 ISAASILAKTARDAEMYALATLYPQYGFEKHKGYGTAAHLAALRQYGVLPEHRADFSPVK 190

Query: 206 NL 207
            L
Sbjct: 191 AL 192


>gi|15610039|ref|NP_217418.1| ribonuclease HII [Mycobacterium tuberculosis H37Rv]
 gi|15842445|ref|NP_337482.1| ribonuclease HII [Mycobacterium tuberculosis CDC1551]
 gi|121638783|ref|YP_979007.1| ribonuclease HII [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148662746|ref|YP_001284269.1| ribonuclease HII [Mycobacterium tuberculosis H37Ra]
 gi|148824091|ref|YP_001288845.1| ribonuclease HII [Mycobacterium tuberculosis F11]
 gi|167969531|ref|ZP_02551808.1| ribonuclease HII [Mycobacterium tuberculosis H37Ra]
 gi|215404876|ref|ZP_03417057.1| ribonuclease HII [Mycobacterium tuberculosis 02_1987]
 gi|215412745|ref|ZP_03421457.1| ribonuclease HII [Mycobacterium tuberculosis 94_M4241A]
 gi|215428343|ref|ZP_03426262.1| ribonuclease HII [Mycobacterium tuberculosis T92]
 gi|215431850|ref|ZP_03429769.1| ribonuclease HII [Mycobacterium tuberculosis EAS054]
 gi|215447164|ref|ZP_03433916.1| ribonuclease HII [Mycobacterium tuberculosis T85]
 gi|218754655|ref|ZP_03533451.1| ribonuclease HII [Mycobacterium tuberculosis GM 1503]
 gi|219558926|ref|ZP_03538002.1| ribonuclease HII [Mycobacterium tuberculosis T17]
 gi|224991275|ref|YP_002645964.1| ribonuclease HII [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798010|ref|YP_003031011.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis KZN 1435]
 gi|254365542|ref|ZP_04981587.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254551974|ref|ZP_05142421.1| ribonuclease HII [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260187921|ref|ZP_05765395.1| ribonuclease HII [Mycobacterium tuberculosis CPHL_A]
 gi|260202037|ref|ZP_05769528.1| ribonuclease HII [Mycobacterium tuberculosis T46]
 gi|260206220|ref|ZP_05773711.1| ribonuclease HII [Mycobacterium tuberculosis K85]
 gi|289444457|ref|ZP_06434201.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T46]
 gi|289448567|ref|ZP_06438311.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis CPHL_A]
 gi|289553309|ref|ZP_06442519.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis KZN 605]
 gi|289571090|ref|ZP_06451317.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T17]
 gi|289575607|ref|ZP_06455834.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis K85]
 gi|289746701|ref|ZP_06506079.1| ribonuclease HII [Mycobacterium tuberculosis 02_1987]
 gi|289751567|ref|ZP_06510945.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T92]
 gi|289755014|ref|ZP_06514392.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis EAS054]
 gi|289759022|ref|ZP_06518400.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T85]
 gi|289763078|ref|ZP_06522456.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium
           tuberculosis GM 1503]
 gi|294994002|ref|ZP_06799693.1| ribonuclease HII [Mycobacterium tuberculosis 210]
 gi|297635520|ref|ZP_06953300.1| ribonuclease HII [Mycobacterium tuberculosis KZN 4207]
 gi|297732519|ref|ZP_06961637.1| ribonuclease HII [Mycobacterium tuberculosis KZN R506]
 gi|298526371|ref|ZP_07013780.1| ribonuclease HII [Mycobacterium tuberculosis 94_M4241A]
 gi|306777190|ref|ZP_07415527.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu001]
 gi|306781097|ref|ZP_07419434.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu002]
 gi|306785737|ref|ZP_07424059.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu003]
 gi|306789776|ref|ZP_07428098.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu004]
 gi|306794590|ref|ZP_07432892.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu005]
 gi|306798833|ref|ZP_07437135.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu006]
 gi|306804679|ref|ZP_07441347.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu008]
 gi|306808871|ref|ZP_07445539.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu007]
 gi|306968970|ref|ZP_07481631.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu009]
 gi|306973307|ref|ZP_07485968.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu010]
 gi|307081015|ref|ZP_07490185.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu011]
 gi|307085614|ref|ZP_07494727.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu012]
 gi|313659851|ref|ZP_07816731.1| ribonuclease HII [Mycobacterium tuberculosis KZN V2475]
 gi|1710612|sp|Q10793|RNH2_MYCTU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166226625|sp|A1KMP6|RNH2_MYCBP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166226629|sp|A5U6Q7|RNH2_MYCTA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807981|sp|C1AG17|RNH2_MYCBT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|1403423|emb|CAA98340.1| PROBABLE RIBONUCLEASE HII PROTEIN RNHB (RNASE HII) [Mycobacterium
           tuberculosis H37Rv]
 gi|13882748|gb|AAK47296.1| ribonuclease HII [Mycobacterium tuberculosis CDC1551]
 gi|121494431|emb|CAL72912.1| Probable ribonuclease HII protein rnhB [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|134151055|gb|EBA43100.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148506898|gb|ABQ74707.1| ribonuclease HII [Mycobacterium tuberculosis H37Ra]
 gi|148722618|gb|ABR07243.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium
           tuberculosis F11]
 gi|224774390|dbj|BAH27196.1| ribonuclease HII [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319513|gb|ACT24116.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis KZN 1435]
 gi|289417376|gb|EFD14616.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T46]
 gi|289421525|gb|EFD18726.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis CPHL_A]
 gi|289437941|gb|EFD20434.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis KZN 605]
 gi|289540038|gb|EFD44616.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis K85]
 gi|289544844|gb|EFD48492.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T17]
 gi|289687229|gb|EFD54717.1| ribonuclease HII [Mycobacterium tuberculosis 02_1987]
 gi|289692154|gb|EFD59583.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T92]
 gi|289695601|gb|EFD63030.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis EAS054]
 gi|289710584|gb|EFD74600.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium
           tuberculosis GM 1503]
 gi|289714586|gb|EFD78598.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T85]
 gi|298496165|gb|EFI31459.1| ribonuclease HII [Mycobacterium tuberculosis 94_M4241A]
 gi|308214472|gb|EFO73871.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu001]
 gi|308326083|gb|EFP14934.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu002]
 gi|308329647|gb|EFP18498.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu003]
 gi|308333786|gb|EFP22637.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu004]
 gi|308337180|gb|EFP26031.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu005]
 gi|308340911|gb|EFP29762.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu006]
 gi|308344823|gb|EFP33674.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu007]
 gi|308348771|gb|EFP37622.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu008]
 gi|308353472|gb|EFP42323.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu009]
 gi|308357337|gb|EFP46188.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu010]
 gi|308361221|gb|EFP50072.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu011]
 gi|308364841|gb|EFP53692.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu012]
 gi|323718512|gb|EGB27683.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis CDC1551A]
 gi|326904516|gb|EGE51449.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis W-148]
 gi|328457784|gb|AEB03207.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis KZN 4207]
          Length = 264

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/201 (40%), Positives = 116/201 (57%), Gaps = 10/201 (4%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE+ +    + PVAG+DEVGRGA AGP+VVAA +L P  I     ++DSKK+S + RE+L
Sbjct: 23  LESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDDSKKLSEQAREKL 82

Query: 72  YEKITSSAI----ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           +  I   A+    + I SA    +D+  +H A ++ +  AV  L V P   L DG  +P 
Sbjct: 83  FPLICRYAVAYHVVFIPSAE---VDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVP- 138

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            LP  +  VI GD+ +  IAAAS++AKV+RDR+M      +P YGF  H GY T  H + 
Sbjct: 139 GLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAHSRA 198

Query: 188 IKEKGPSCIHRLTFRPLRNLS 208
           +   GP   HR +F  +R ++
Sbjct: 199 LARLGPCPQHRYSFINVRRVA 219


>gi|238650442|ref|YP_002916294.1| ribonuclease HII [Rickettsia peacockii str. Rustic]
 gi|238624540|gb|ACR47246.1| ribonuclease HII [Rickettsia peacockii str. Rustic]
          Length = 188

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/177 (49%), Positives = 113/177 (63%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           VAGIDE GRG LAGPVV + +I+D  NI  GI DSKK+S KKRE LYE+ITS+ + + + 
Sbjct: 12  VAGIDEAGRGPLAGPVVASTVIVDNANIITGIKDSKKLSKKKRELLYEQITSNYVWATAI 71

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            SH  ID  NI +AT  A   AV NL + P   L+DG    +D   +  ++I GD++SLS
Sbjct: 72  ISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKDE--RFVSIINGDNLSLS 129

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           IAAASI+AKVTRDRLM     ++P Y +  + GY   +H + I   G S  HR +FR
Sbjct: 130 IAAASIVAKVTRDRLMLDLSAEFPQYLWHKNSGYGIKEHIEAINIHGLSPYHRRSFR 186


>gi|94267010|ref|ZP_01290655.1| Ribonuclease H [delta proteobacterium MLMS-1]
 gi|93452284|gb|EAT02925.1| Ribonuclease H [delta proteobacterium MLMS-1]
          Length = 236

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/196 (44%), Positives = 122/196 (62%), Gaps = 11/196 (5%)

Query: 20  EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E+++W      VAG DE GRG LAGPVV A ++L P +      DSK++S  +R EL  +
Sbjct: 22  ERSLWAQGYRLVAGTDEAGRGPLAGPVVAACVVL-PVDCRSPFQDSKQLSASRRRELEAE 80

Query: 75  ITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPEDLPC 131
           + +   A + +  AS   ID  NI +A+L A+  AV  LQ  P   L+DG+ +IP +LP 
Sbjct: 81  LNALPGAAVGVGIASVAEIDGLNILQASLLAMRKAVTALQPAPDFLLVDGKFTIPLELPQ 140

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           QA  +IKGDS S SIAAASI+AK  RD+LM   H++YP Y F  H GY TA+H++++   
Sbjct: 141 QA--LIKGDSRSASIAAASIVAKERRDQLMADLHRQYPQYNFIQHKGYATAEHRRLLHRF 198

Query: 192 GPSCIHRLTFRPLRNL 207
           GP   HR +F+P+R L
Sbjct: 199 GPCPEHRRSFKPVREL 214


>gi|291543926|emb|CBL17035.1| RNase HII [Ruminococcus sp. 18P13]
          Length = 205

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/200 (44%), Positives = 128/200 (64%), Gaps = 9/200 (4%)

Query: 12  FELEAMVREKNMWPV-AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           FE +  VR  N +PV  G+DE GRG LAG V  AA++L P+ +  G++DSKK++ K+RE 
Sbjct: 12  FEYDEAVR--NSYPVFCGVDEAGRGPLAGDVYAAAVVLPPDVVIPGLDDSKKLTEKRREA 69

Query: 71  LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-D 128
           LY++I + A    I++A+ + I++ NI +A + A+  AV  L +  +  LIDG  +P  +
Sbjct: 70  LYDEIIAKASACCIAAATVEEIEQLNILQAAMLAMTRAVSGLDIPVQCVLIDGNRLPRMN 129

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LP QA  VI GD+ S SIAAAS++AKV RDR M    ++YP+YGF  H GY T  H + +
Sbjct: 130 LPMQA--VIHGDATSASIAAASVLAKVARDRYMLALDQQYPEYGFCKHKGYGTKAHYEAL 187

Query: 189 KEKGPSCIHRLTFRPLRNLS 208
              G S +HR +F  L+NL+
Sbjct: 188 AAHGISPVHRRSF--LKNLT 205


>gi|219669769|ref|YP_002460204.1| ribonuclease HII [Desulfitobacterium hafniense DCB-2]
 gi|254807972|sp|B8FRK8|RNH2_DESHD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|219540029|gb|ACL21768.1| Ribonuclease H [Desulfitobacterium hafniense DCB-2]
          Length = 260

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/201 (46%), Positives = 125/201 (62%), Gaps = 10/201 (4%)

Query: 14  LEAMVRE-KNMWP-----VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHK 66
           +EA++RE K +W      +AGIDE GRG LAGPVV A  IL    N+P G+NDSKK++  
Sbjct: 57  IEALLREEKQLWLNGYLHIAGIDEAGRGPLAGPVVAATCILPAKFNLP-GLNDSKKLTES 115

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           KRE+L+++I   AI  ++ SA    ID  NI +AT  A+  AVE L+V P   LID   +
Sbjct: 116 KREKLFQQIKEQAIGYAVGSAEPAEIDGLNILQATKLAMKRAVEGLKVRPHFLLIDALEL 175

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  L      +I GD++S SIAAASI+AKV+RD LM    K YP+YGF  + GY T +H 
Sbjct: 176 P-SLKIPQKGIIDGDALSASIAAASILAKVSRDHLMGELDKLYPEYGFAKNKGYGTREHL 234

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
             ++  G S IHR +F P++ 
Sbjct: 235 MALRRHGVSPIHRRSFAPVQQ 255


>gi|291320659|ref|YP_003515924.1| ribonuclease H II [Mycoplasma agalactiae]
 gi|290752995|emb|CBH40971.1| Ribonuclease H II [Mycoplasma agalactiae]
          Length = 207

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/181 (39%), Positives = 112/181 (61%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DE GRG  AGP+VVA++I+  N     INDSKK+S K+R+ L+++I +  I   I 
Sbjct: 15  IAGVDEAGRGCCAGPLVVASVIMPKNYNNERINDSKKLSAKQRDILFDEILNVCIDYHIV 74

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           +    Y+DK+N  K++ + +   +++L   P   + D   I E L  +   ++KGDSIS 
Sbjct: 75  TLPSSYVDKYNPKKSSKNGMKICIDSLNTKPDLVITDFEKIDE-LAIKQVNLVKGDSISF 133

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           ++A ASI+AKVTRDR M     KY +Y F+ H GY T +H + I + G +  HRLT++ +
Sbjct: 134 NVACASILAKVTRDRFMIKIANKYKEYEFEKHKGYCTKRHTESIIQYGATPEHRLTYKNV 193

Query: 205 R 205
           +
Sbjct: 194 K 194


>gi|317486906|ref|ZP_07945716.1| ribonuclease HII [Bilophila wadsworthia 3_1_6]
 gi|316921781|gb|EFV43057.1| ribonuclease HII [Bilophila wadsworthia 3_1_6]
          Length = 237

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/189 (43%), Positives = 110/189 (58%), Gaps = 12/189 (6%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAGIDE GRG LAGPVV AA+IL    +  G+ DSK +S  +R+ L  +I + A+   + 
Sbjct: 34  VAGIDEAGRGCLAGPVVAAAVILPEGAVIPGLADSKVLSPTRRDGLAAEIGAVALAWGLG 93

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLPCQAFA-------- 135
                 ID+ NI +ATL A+ HA   L+V P+  LIDG ++IPE L  Q  A        
Sbjct: 94  VVWPPEIDRINILQATLKAMCHAASVLKVRPKGLLIDGNQTIPEPLFRQRAACWPSSPRQ 153

Query: 136 --VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             ++ GD++   I+AASIIAK  RD LM     +YP YGF  H GY + +H   ++E GP
Sbjct: 154 KSIVDGDALVPVISAASIIAKTFRDMLMDKLDHRYPGYGFAKHKGYGSKEHFAALRELGP 213

Query: 194 SCIHRLTFR 202
             +HR TFR
Sbjct: 214 CPMHRKTFR 222


>gi|256831070|ref|YP_003159798.1| Ribonuclease H [Desulfomicrobium baculatum DSM 4028]
 gi|256580246|gb|ACU91382.1| Ribonuclease H [Desulfomicrobium baculatum DSM 4028]
          Length = 207

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/178 (42%), Positives = 108/178 (60%), Gaps = 4/178 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG LAGPVV  A+IL P+    G+ DSKK+S ++R  L + I + A+  ++  
Sbjct: 16  AGVDEAGRGCLAGPVVAGAVILPPDFDLPGLTDSKKLSSRRRVVLAQAIKAQAVSWALGF 75

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLPCQAFAVIKGDSISL 144
           +    ID+ NI +A+L A+  AVE L+V P   L+DG +  P  LP +   V+ GD++  
Sbjct: 76  SWPGEIDRINILQASLAAMARAVEALRVSPGLVLVDGNQRFPSSLPQKT--VVGGDALHP 133

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            I+AASI+AK  RD L+    ++YP YG   H GY T  H   ++  GPS  HR++FR
Sbjct: 134 CISAASILAKTFRDDLLLCMDQRYPGYGLAVHKGYGTKAHLDALRRLGPSPAHRVSFR 191


>gi|218288272|ref|ZP_03492571.1| Ribonuclease H [Alicyclobacillus acidocaldarius LAA1]
 gi|218241631|gb|EED08804.1| Ribonuclease H [Alicyclobacillus acidocaldarius LAA1]
          Length = 207

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/183 (42%), Positives = 112/183 (61%), Gaps = 8/183 (4%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI-I 81
           AG+DEVGRG +AGPVV A+++L      +     + DSK++    RE L ++I + A+ +
Sbjct: 21  AGVDEVGRGCIAGPVVAASVVLPLELETYEELKDVMDSKQLKSDVRERLADRIRAKALAV 80

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLPCQAFAVIKGD 140
            I  AS + ID+ NI +AT  A+  +++ L +    AL+DG R+    +P     V+ GD
Sbjct: 81  GIGMASPEEIDRLNILQATQLAMKRSLDALDIPVDLALVDGNRAFRHRVPV--LPVVDGD 138

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           + SL IAAAS+IAKV RDRLM    + +P YGF  HVGY T  H + ++  GPS +HRL+
Sbjct: 139 ARSLPIAAASVIAKVFRDRLMAKLDEGFPGYGFSEHVGYGTRAHLEALRRLGPSVVHRLS 198

Query: 201 FRP 203
           F P
Sbjct: 199 FAP 201


>gi|255010102|ref|ZP_05282228.1| ribonuclease HII [Bacteroides fragilis 3_1_12]
 gi|313147897|ref|ZP_07810090.1| ribonuclease HII [Bacteroides fragilis 3_1_12]
 gi|313136664|gb|EFR54024.1| ribonuclease HII [Bacteroides fragilis 3_1_12]
          Length = 201

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/182 (45%), Positives = 109/182 (59%), Gaps = 7/182 (3%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK++S K+R  L E I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFENELLNDSKQLSEKQRYALREVIEREAIAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG---RSIPEDLPCQAFAVIKGDSI 142
            S + IDK NI  A+  A++ AV+ L+  P+  LIDG   R  P D+P     V+KGD  
Sbjct: 73  VSPEEIDKINILNASFLAMHRAVDGLKTRPQHLLIDGNRFRKYP-DIPHTT--VVKGDGK 129

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            LSIAAASI+AK  RD  M   H+++P YG+D + GYPT KH+  I E G +  HR+TF 
Sbjct: 130 YLSIAAASILAKTYRDDYMNGLHQEFPCYGWDHNKGYPTKKHRAAIAENGVTPYHRMTFN 189

Query: 203 PL 204
            L
Sbjct: 190 LL 191


>gi|169830848|ref|YP_001716830.1| ribonuclease HII [Candidatus Desulforudis audaxviator MP104C]
 gi|169637692|gb|ACA59198.1| Ribonuclease H [Candidatus Desulforudis audaxviator MP104C]
          Length = 267

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/197 (41%), Positives = 112/197 (56%), Gaps = 3/197 (1%)

Query: 8   ERPH--FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           ER H  +  E  +      PVAG DE GRG LAGPVV AA++L        + DSK+++ 
Sbjct: 59  ERLHSLYGYERALEAAGCGPVAGTDEAGRGPLAGPVVAAAVVLSRGAAIPELKDSKQLTG 118

Query: 66  KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
             R  L ++I +      I  A    I + NI +A+L A+  A++ L  IP   L+DG  
Sbjct: 119 PARSRLADEIRARCHAWGIGVADVGEIARLNILRASLLAMRRALDGLGFIPGWVLVDGSF 178

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
                P    A++KGD +S S+AAASI+AKV RD LM   H+ YP+YGFD H GYPT +H
Sbjct: 179 TVPLFPGPQTALVKGDRVSASVAAASILAKVYRDELMERLHRLYPEYGFDRHKGYPTPEH 238

Query: 185 QQVIKEKGPSCIHRLTF 201
            Q ++  GP  +HR++F
Sbjct: 239 YQALERYGPCPLHRVSF 255


>gi|261378092|ref|ZP_05982665.1| ribonuclease HII [Neisseria cinerea ATCC 14685]
 gi|269145542|gb|EEZ71960.1| ribonuclease HII [Neisseria cinerea ATCC 14685]
          Length = 194

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/184 (44%), Positives = 109/184 (59%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
            AG+DE GRG L G V  AA+IL +  ++P G+ DSKK+S KKR+ L + I   A     
Sbjct: 5   TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAKMIKEQAAAWHV 63

Query: 85  SA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +A + + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  
Sbjct: 64  AAATPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLGIPAEAVVKGDSKI 123

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           + I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P
Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183

Query: 204 LRNL 207
           +RNL
Sbjct: 184 VRNL 187


>gi|119717477|ref|YP_924442.1| ribonuclease HII [Nocardioides sp. JS614]
 gi|189043632|sp|A1SLS0|RNH2_NOCSJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|119538138|gb|ABL82755.1| Ribonuclease H [Nocardioides sp. JS614]
          Length = 240

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 76/198 (38%), Positives = 108/198 (54%), Gaps = 4/198 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKRE 69
           +  E  +R   + P+AG+DE GRGA AGP+V  A IL P    I  G+ DSK ++ + RE
Sbjct: 17  YGYERALRRHGIEPIAGVDEAGRGACAGPLVAGAAILPPGKAGIVPGLADSKLLTERARE 76

Query: 70  ELYEKITSSAIISISSAS-HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
             YE+I   A+        H+  D+  +H A ++A+  AV  L + P   L DG  + + 
Sbjct: 77  RCYEQIVRRAVSWSVVVVSHEECDRLGMHVANVEALRRAVALLDLPPAYVLTDGFPV-DG 135

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L     AV KGD ++  I+AAS++AKVTRDR+M      +P Y F +H GY T  H   +
Sbjct: 136 LGVPGLAVWKGDRVAACISAASVLAKVTRDRIMTELDASWPAYDFKTHKGYITEVHSAAL 195

Query: 189 KEKGPSCIHRLTFRPLRN 206
              GPS IHR+ F  +R 
Sbjct: 196 TAHGPSPIHRMRFVNVRR 213


>gi|183981819|ref|YP_001850110.1| ribonuclease HII protein RnhB [Mycobacterium marinum M]
 gi|238689245|sp|B2HJL9|RNH2_MYCMM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|183175145|gb|ACC40255.1| ribonuclease HII protein RnhB [Mycobacterium marinum M]
          Length = 239

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/202 (40%), Positives = 115/202 (56%), Gaps = 10/202 (4%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE+ ++   + PVAG+DEVGRGA AGP+VVAA  L PN       ++DSKK++ K RE+L
Sbjct: 20  LESALQRSGLGPVAGVDEVGRGACAGPLVVAACALGPNRYESLAALDDSKKLTEKTREKL 79

Query: 72  YEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           +  I   A    ++ I S     +D+  +H A ++ +  AV  L V P   L DG  +P 
Sbjct: 80  FPLICRYALAYHVVFIPSVE---VDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP- 135

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            L   +  VI GD+ +  IAAAS++AKV+RDRLM     +YP YGF  H GY T  H   
Sbjct: 136 GLSVPSLPVIGGDAAAACIAAASVLAKVSRDRLMVAMDTQYPGYGFAEHKGYSTRAHTLA 195

Query: 188 IKEKGPSCIHRLTFRPLRNLSV 209
           + + GP   HR +F  +R ++ 
Sbjct: 196 LTQLGPCPEHRRSFINVRRVAT 217


>gi|320527486|ref|ZP_08028667.1| ribonuclease HII [Solobacterium moorei F0204]
 gi|320132199|gb|EFW24748.1| ribonuclease HII [Solobacterium moorei F0204]
          Length = 208

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/197 (40%), Positives = 113/197 (57%), Gaps = 18/197 (9%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           E   WP    + GIDE GRG LAGP+ VA ++         I DSK IS KKR+ L+E+I
Sbjct: 12  EHQYWPLEKLIIGIDEAGRGPLAGPLTVAGVVFPIGYENPDIYDSKSISEKKRDALFEQI 71

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAV--ENLQVIPRSAL---IDGRSIPEDL 129
              A+   I   S + IDK+NI++A   A+       + +++   A+   I+G+ I    
Sbjct: 72  QEDALWFEIIQVSPEDIDKYNIYRADQLAMEQIAIHSDAEIVLTDAMPLIIEGKEI---- 127

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                 ++KGD  S+SIAAASI+AKVTRDR+M    K+YP+YGF  H GYPT +H + + 
Sbjct: 128 ----IPLVKGDQKSISIAAASILAKVTRDRVMLEYDKEYPEYGFAKHKGYPTKQHMEALH 183

Query: 190 EKGPSCIHRLTFRPLRN 206
             G + IHR +F P+R 
Sbjct: 184 TYGVTKIHRKSFGPVRE 200


>gi|254523247|ref|ZP_05135302.1| ribonuclease HII [Stenotrophomonas sp. SKA14]
 gi|219720838|gb|EED39363.1| ribonuclease HII [Stenotrophomonas sp. SKA14]
          Length = 221

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 79/197 (40%), Positives = 120/197 (60%), Gaps = 4/197 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREE 70
           F+  A+V  + +  +AG+DE GRG LAGPV VAA++ DP+     G++DSK+++  +RE+
Sbjct: 14  FDGAAVVEPERL--IAGVDEAGRGPLAGPVAVAAVVFDPSRPRINGLDDSKQLTAARREQ 71

Query: 71  LYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L+++I   A+   +       ID+ NI++ATL  +   V  +  +   A IDG  +P+ L
Sbjct: 72  LHDRIIERALAWHVVLVDVDTIDRLNIYQATLQGMREVVAAVAHVAGFARIDGNVVPKGL 131

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              A A+I GD I  +I AASI+AKV+RDR M+  H ++P YGF+ H GY T  H   ++
Sbjct: 132 VLPAQALIGGDGIDRAIMAASILAKVSRDRYMQDVHARHPQYGFEQHKGYGTPAHLAALR 191

Query: 190 EKGPSCIHRLTFRPLRN 206
           E GP   HR +F P+R 
Sbjct: 192 EHGPCLEHRRSFAPVRE 208


>gi|118617628|ref|YP_905960.1| ribonuclease HII [Mycobacterium ulcerans Agy99]
 gi|166226630|sp|A0PQ70|RNH2_MYCUA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|118569738|gb|ABL04489.1| ribonuclease HII protein RnhB [Mycobacterium ulcerans Agy99]
          Length = 239

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/202 (40%), Positives = 115/202 (56%), Gaps = 10/202 (4%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE+ ++   + PVAG+DEVGRGA AGP+VVAA  L PN       ++DSKK++ K RE+L
Sbjct: 20  LESALQRSGLGPVAGVDEVGRGACAGPLVVAACALGPNRYESLAALDDSKKLTEKTREKL 79

Query: 72  YEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           +  I   A    ++ I S     +D+  +H A ++ +  AV  L V P   L DG  +P 
Sbjct: 80  FPLICRYALAYHVVFIPSVE---VDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP- 135

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            L   +  VI GD+ +  IAAAS++AKV+RDRLM     +YP YGF  H GY T  H   
Sbjct: 136 GLSVPSLPVIGGDAAAACIAAASVLAKVSRDRLMVAMDTQYPGYGFAEHKGYSTRAHTLA 195

Query: 188 IKEKGPSCIHRLTFRPLRNLSV 209
           + + GP   HR +F  +R ++ 
Sbjct: 196 LTQLGPCPEHRRSFINVRRVAT 217


>gi|328952474|ref|YP_004369808.1| Ribonuclease H [Desulfobacca acetoxidans DSM 11109]
 gi|328452798|gb|AEB08627.1| Ribonuclease H [Desulfobacca acetoxidans DSM 11109]
          Length = 215

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/197 (41%), Positives = 114/197 (57%), Gaps = 6/197 (3%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           +LE   R + +  +AG+DEVGRG LAGPVV AA+IL  +++   + DSK+++  +RE   
Sbjct: 19  DLEEAYRRQGIRFIAGVDEVGRGPLAGPVVAAAVILASDSVFPRLTDSKQLTPARREFFD 78

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            ++   A+  +I       I+   I  A+L A+  AV++L + P   LIDG   P  L  
Sbjct: 79  RQVRDQALAFAIQEVGVPEIESLGILSASLKAMALAVQSLVLKPELVLIDG---PWGLQI 135

Query: 132 QAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           Q       KGD   LSIAAAS++AKV RDR M+  H+ YP Y F SH GY T +H + I+
Sbjct: 136 QVQQQPIIKGDQRCLSIAAASVLAKVYRDRQMQAIHELYPHYNFASHKGYGTREHLEAIR 195

Query: 190 EKGPSCIHRLTFRPLRN 206
             GP  +HR TFR +R 
Sbjct: 196 RWGPCPVHRRTFRGVRE 212


>gi|198283300|ref|YP_002219621.1| Ribonuclease H [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665608|ref|YP_002425888.1| ribonuclease HII [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247821|gb|ACH83414.1| Ribonuclease H [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517821|gb|ACK78407.1| ribonuclease HII [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 196

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/180 (41%), Positives = 107/180 (59%), Gaps = 7/180 (3%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISIS 84
           AG+DE GRG LAGPVV AA+IL    +P  G++DSKK++   R     +I + A+  S++
Sbjct: 15  AGVDEAGRGPLAGPVVAAAVIL---RVPLHGLDDSKKMTAAARTHWAARIRNEALAWSVA 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A+   I+++NI +A+L A+  A+  L   PR  L+DG   P     Q   ++ GD    
Sbjct: 72  RAAVWEIERYNILQASLRAMARAIVGLPRQPRRILVDGNQSPPGW--QVETLVGGDGRVD 129

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAA I+AKVTRD  M++  + YP YG   H+GY TA H Q ++  GP  +HR  F P+
Sbjct: 130 AIAAAGILAKVTRDEEMQLLDRYYPQYGLARHMGYGTAVHLQALRRWGPCALHRRGFGPV 189


>gi|89895335|ref|YP_518822.1| hypothetical protein DSY2589 [Desulfitobacterium hafniense Y51]
 gi|122482323|sp|Q24UB4|RNH2_DESHY RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|89334783|dbj|BAE84378.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 260

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/201 (46%), Positives = 125/201 (62%), Gaps = 10/201 (4%)

Query: 14  LEAMVRE-KNMWP-----VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHK 66
           +EA++RE K +W      +AGIDE GRG LAGPVV A  IL    N+P G+NDSKK++  
Sbjct: 57  IEALLREEKQLWLNGYLHIAGIDEAGRGPLAGPVVAATCILPAKFNLP-GLNDSKKLTES 115

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           KRE+L+++I   AI  ++ SA    ID  NI +AT  A+  AVE L+V P   LID   +
Sbjct: 116 KREKLFQQIKEQAIGYAVGSAEPAEIDGLNILQATKLAMKRAVEGLKVRPHFLLIDALEL 175

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  L      +I GD++S SIAAASI+AKV+RD LM    K YP+YGF  + GY T +H 
Sbjct: 176 P-SLKIPQKGIIDGDALSASIAAASILAKVSRDHLMGELDKLYPEYGFAKNKGYGTREHL 234

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
             ++  G S IHR +F P++ 
Sbjct: 235 MALRRCGVSPIHRRSFAPVQQ 255


>gi|315282093|ref|ZP_07870581.1| ribonuclease HII [Listeria marthii FSL S4-120]
 gi|313614263|gb|EFR87919.1| ribonuclease HII [Listeria marthii FSL S4-120]
          Length = 262

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/194 (44%), Positives = 124/194 (63%), Gaps = 3/194 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + EA + ++    +AG+DEVGRG LAGPVV AA+IL  +    GINDSK++S  KR+ L+
Sbjct: 60  QYEADLFQQGYQYIAGVDEVGRGPLAGPVVAAAVILPADFSIVGINDSKQLSEAKRDALF 119

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E I + AI I +    H  ID+ NI++AT  A+  +++ L   P   LID  ++P     
Sbjct: 120 ETIKAEAIAIGVGIIEHDVIDQVNIYEATKLAMRESLDQLVPKPDFVLID--AMPLKYME 177

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASIIAKVTRDRLM++  +KYP Y F +++GY T  H   +   
Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGTKNHLTGLDSI 237

Query: 192 GPSCIHRLTFRPLR 205
           G   IHRL+F P++
Sbjct: 238 GICPIHRLSFSPVK 251


>gi|291004125|ref|ZP_06562098.1| ribonuclease HII [Saccharopolyspora erythraea NRRL 2338]
          Length = 238

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/194 (41%), Positives = 116/194 (59%), Gaps = 4/194 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKR 68
           ++ L++ +  + + PVAG+DE GRGA AGP+VVAA  L P +     G+ DSK +S  +R
Sbjct: 8   NWALQSALDRRGLGPVAGVDEAGRGACAGPLVVAACALKPGDGRRFEGLTDSKVLSPAER 67

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E LY+ I + A+ +S+       +D   IH A L+ +  AV  L V P   L DG  +P 
Sbjct: 68  ERLYDVIQAKALSLSVIVIPADEVDALGIHVANLEGMRRAVAQLSVAPGYVLTDGFRVP- 126

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            L   + AV+KGD ++  +AAAS++AKVTRDR+M   H+++P YGFD H GY T+ H   
Sbjct: 127 GLGAPSVAVVKGDLVAACVAAASVLAKVTRDRIMTGLHEQFPVYGFDEHKGYCTSDHTAR 186

Query: 188 IKEKGPSCIHRLTF 201
           + E GP   HR  +
Sbjct: 187 LTEHGPCEEHRWCY 200


>gi|317473605|ref|ZP_07932894.1| ribonuclease HII [Anaerostipes sp. 3_2_56FAA]
 gi|316898895|gb|EFV20920.1| ribonuclease HII [Anaerostipes sp. 3_2_56FAA]
          Length = 225

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/192 (47%), Positives = 118/192 (61%), Gaps = 3/192 (1%)

Query: 12  FELEAMVREKNMWP-VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           +E+ +  RE   +  + GIDEVGRG  AGPVV AA+IL  +     +NDSKKIS KKRE 
Sbjct: 30  YEMFSYEREYERYSHICGIDEVGRGPFAGPVVAAAVILPRDCDILYLNDSKKISPKKREA 89

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY+KI   A+ + I  AS + ID+ NI  AT +A+  AV NL V P   L D  +IP  +
Sbjct: 90  LYDKIYEKALAVGIGMASEKVIDEINILNATYEAMRTAVSNLPVEPDLLLNDAVTIP-GI 148

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             +   +IKGD+ S SIAAASI+AKVTRDR+M    + YP Y F  + GY T  H + IK
Sbjct: 149 GTEQVPIIKGDAKSASIAAASIVAKVTRDRMMEEYDQLYPQYQFAKNKGYGTKAHIEAIK 208

Query: 190 EKGPSCIHRLTF 201
           E G   +HR +F
Sbjct: 209 EYGICTLHRKSF 220


>gi|119485462|ref|ZP_01619790.1| ribonuclease HII [Lyngbya sp. PCC 8106]
 gi|119457218|gb|EAW38344.1| ribonuclease HII [Lyngbya sp. PCC 8106]
          Length = 199

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/183 (44%), Positives = 108/183 (59%), Gaps = 5/183 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI- 80
           +AGIDEVGRGAL GPVV  A+IL    I      G+ DSK++    R+ L ++I + A+ 
Sbjct: 5   IAGIDEVGRGALFGPVVAGAVILSDEAITALTAAGVRDSKQLRPPMRKRLAQEIRAMALS 64

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             ++ AS Q ID+ NI +ATL A+  ++  L+  P   LIDG     DL      VIKGD
Sbjct: 65  CQVAVASVQEIDRLNILQATLLAMKRSILKLKPPPDLCLIDGNQPIRDLLIPQQTVIKGD 124

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
             S  IAAASI+AKV RD L+     KY +Y   ++ GY T KH+Q ++  GPS  HRL+
Sbjct: 125 QTSTVIAAASIVAKVWRDELIVRLADKYREYDLSNNKGYGTKKHRQALQRYGPSRQHRLS 184

Query: 201 FRP 203
           F P
Sbjct: 185 FAP 187


>gi|261364835|ref|ZP_05977718.1| ribonuclease HII [Neisseria mucosa ATCC 25996]
 gi|288566876|gb|EFC88436.1| ribonuclease HII [Neisseria mucosa ATCC 25996]
          Length = 196

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 80/189 (42%), Positives = 115/189 (60%), Gaps = 5/189 (2%)

Query: 23  MWPV--AGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSA 79
           M P+  AG+DE GRG L G V  AA+IL +  ++P G+ DSKK+S KKR+ L   I   A
Sbjct: 1   MSPILLAGVDEAGRGPLVGSVFAAAVILPERYDLP-GLTDSKKLSEKKRDTLAVLIKEQA 59

Query: 80  IISISSASH-QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           +    +++  + I + NI  AT+ A+  AV+ L V+P   LIDG  +P+DL   A A++K
Sbjct: 60  VSWSVASASSEEIAELNILHATMLAMTRAVQGLVVVPDKVLIDGNRVPKDLGIPAEAIVK 119

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GDS  + I+AAS++AK  RD  M    ++YP YGFD H GY TA+H   +++ G    HR
Sbjct: 120 GDSKIIEISAASVLAKTARDAEMYALAERYPQYGFDQHKGYGTAQHLAALQKYGVLPEHR 179

Query: 199 LTFRPLRNL 207
             F P++ L
Sbjct: 180 RDFAPVKAL 188


>gi|307546380|ref|YP_003898859.1| ribonuclease HII [Halomonas elongata DSM 2581]
 gi|307218404|emb|CBV43674.1| ribonuclease HII [Halomonas elongata DSM 2581]
          Length = 203

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 87/196 (44%), Positives = 119/196 (60%), Gaps = 4/196 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           EL  +V E     +AG+DEVGRG L GPVV AA+ILDP +   G+ DSKK+S K+RE L 
Sbjct: 5   ELPPLVIEYQGERLAGVDEVGRGPLVGPVVAAAVILDPRDPIDGLTDSKKLSAKRRESLD 64

Query: 73  EKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-EDLP 130
            +I   A+  S++ AS   ID  NI+ AT  A+  A++ L       L+DG  +P   +P
Sbjct: 65  AEIRERALAWSVAEASADEIDALNIYHATHLAMRRAIDALNPAAEYLLVDGNRLPGHHVP 124

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            QA  V+KGD+   +IAAASI+AKV RD  M+    ++PDYGF  H GYPT +H   ++ 
Sbjct: 125 GQA--VVKGDARHAAIAAASILAKVARDAGMQTLDTRHPDYGFARHKGYPTREHLAALER 182

Query: 191 KGPSCIHRLTFRPLRN 206
            GP   HR +F P++ 
Sbjct: 183 LGPLPEHRRSFGPVKR 198


>gi|153812956|ref|ZP_01965624.1| hypothetical protein RUMOBE_03363 [Ruminococcus obeum ATCC 29174]
 gi|149830903|gb|EDM85993.1| hypothetical protein RUMOBE_03363 [Ruminococcus obeum ATCC 29174]
          Length = 251

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/199 (44%), Positives = 126/199 (63%), Gaps = 6/199 (3%)

Query: 8   ERPHFELEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           E+    +E M++ ++ +     + GIDEVGRG LAGPVV  A+IL  ++    +NDSKK+
Sbjct: 49  EKEKLRMEQMMQFEHKYEHLGYLCGIDEVGRGPLAGPVVACAVILPKDHPILYLNDSKKL 108

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           +  KREELY+ I   A+ + +  AS   ID+ NI +AT +A+  AV  L V+P+  L D 
Sbjct: 109 TAHKREELYDVIMREAVAVGLGMASPARIDEINILQATYEAMRQAVSKLAVMPQLLLNDA 168

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
            +IP  +      +IKGD+ S SIAAASI+AKVTRDRLM    K  P+YGF S+ GY +A
Sbjct: 169 VTIP-GIEIPQVPIIKGDAKSASIAAASIVAKVTRDRLMVEYDKTMPEYGFASNKGYGSA 227

Query: 183 KHQQVIKEKGPSCIHRLTF 201
           +H   +++ GP+ IHR +F
Sbjct: 228 EHIAALQKYGPTPIHRASF 246


>gi|225870570|ref|YP_002746517.1| ribonuclease HII [Streptococcus equi subsp. equi 4047]
 gi|225699974|emb|CAW93945.1| ribonuclease HII [Streptococcus equi subsp. equi 4047]
          Length = 257

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/204 (43%), Positives = 123/204 (60%), Gaps = 12/204 (5%)

Query: 14  LEAMVR------EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           LEAM+       +K    +AGIDEVGRG LAGPVV A +IL       G+NDSKKI   K
Sbjct: 53  LEAMLTYEQALYQKGFQAIAGIDEVGRGPLAGPVVAACVILPKGCTIKGLNDSKKIPKAK 112

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR 123
            E +Y+ I   A+ I +    +  ID+ NI++AT  A+  A+  L+     P   LID  
Sbjct: 113 HEAIYQAIQKKALGIGLGIIDNHTIDRVNIYEATKLAMTAAINQLEGSVSKPDYLLIDAM 172

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           ++   +P QA  +IKGD+ S+SIAAASI+AKVTRDRLM    K +P YGF  + GY T +
Sbjct: 173 TLEVSIPQQA--IIKGDASSMSIAAASIVAKVTRDRLMLDYDKAFPGYGFAKNAGYGTKE 230

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H Q + + G + IHR +F P++++
Sbjct: 231 HLQGLHQYGVTPIHRQSFEPIKSM 254


>gi|311748115|ref|ZP_07721900.1| ribonuclease HII [Algoriphagus sp. PR1]
 gi|126574759|gb|EAZ79140.1| ribonuclease HII [Algoriphagus sp. PR1]
          Length = 200

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/179 (46%), Positives = 111/179 (62%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DEVGRG LAGPVV AA+IL  +     INDSKK+  K+R++L E+I   ++   ++ 
Sbjct: 14  AGCDEVGRGCLAGPVVAAAVILPSDYSNEWINDSKKLGKKQRQDLIEEIKEKSLSWKVAE 73

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           AS + ID+ NI  A+  A+  A+E L+V P   LIDG      L      VIKGD    S
Sbjct: 74  ASVEEIDQINILNASFLAMSRAIEGLEVSPEHLLIDGNRFKSHLTLPFTCVIKGDGKFAS 133

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AKV RD LM     ++P YG++ +VGYPT  H++ I+E GP   HR +F+ L
Sbjct: 134 IAAASILAKVYRDELMEKLALEHPHYGWERNVGYPTKAHREGIREHGPCIWHRKSFQLL 192


>gi|258647683|ref|ZP_05735152.1| ribonuclease HII [Prevotella tannerae ATCC 51259]
 gi|260852512|gb|EEX72381.1| ribonuclease HII [Prevotella tannerae ATCC 51259]
          Length = 203

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 75/181 (41%), Positives = 109/181 (60%), Gaps = 1/181 (0%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
           P AG DE GRG LAG V  AA++L        +NDSK++S  +R  L E+I   A+  S+
Sbjct: 11  PEAGCDEAGRGCLAGSVYAAAVVLPEGYANARLNDSKQLSPTRRYHLREEILRDAVAWSV 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
            + S   ID+ NI  A++ A++ A++ L+V P   L+DG             ++KGD+  
Sbjct: 71  GTVSASEIDEINILNASILAMHRALDGLKVRPAFILVDGNRFKPYGSTPFATIVKGDAKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAASI+AK  RD  MR  H++YP YG+D + GYPT +H++ I++ G +  HR +FR 
Sbjct: 131 LSIAAASILAKTFRDDEMRRLHEQYPWYGWDHNAGYPTREHRRGIEQHGLTPYHRRSFRL 190

Query: 204 L 204
           L
Sbjct: 191 L 191


>gi|296113384|ref|YP_003627322.1| ribonuclease HII [Moraxella catarrhalis RH4]
 gi|295921078|gb|ADG61429.1| ribonuclease HII [Moraxella catarrhalis RH4]
 gi|326559229|gb|EGE09660.1| ribonuclease HII [Moraxella catarrhalis 46P47B1]
 gi|326560783|gb|EGE11150.1| ribonuclease HII [Moraxella catarrhalis 103P14B1]
 gi|326563524|gb|EGE13783.1| ribonuclease HII [Moraxella catarrhalis 12P80B1]
 gi|326569646|gb|EGE19698.1| ribonuclease HII [Moraxella catarrhalis BC1]
 gi|326574415|gb|EGE24357.1| ribonuclease HII [Moraxella catarrhalis 101P30B1]
          Length = 239

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/208 (42%), Positives = 116/208 (55%), Gaps = 25/208 (12%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIIL-----------DPNNIPFGI-NDSKKISHKKREELY 72
           P+ GIDEVGRGAL G + V A+IL           D  N    + NDSKK+S K+RE+L+
Sbjct: 19  PIVGIDEVGRGALFGNMTVGAVILPNELSGRFDEIDLTNTKISLLNDSKKLSEKRREQLF 78

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVE------NLQVIPRSALIDGRSI 125
           + IT  A+  +I       ID+ NI++AT+  +  A+E      NL     + LIDG  +
Sbjct: 79  DIITDLALDYAIVDVPSTIIDQINIYQATMLGMKIAIETIIIKNNLNEKNTTILIDGNQL 138

Query: 126 PE------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           P       +   Q +A+IKGD+   SIA ASI+AKV RDRLM    K YP+Y  D H GY
Sbjct: 139 PSMDGSLGEHFHQIYAMIKGDATHSSIACASILAKVHRDRLMIQHAKSYPEYLLDKHKGY 198

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
            TAKH+  I E G    HR +F P+R L
Sbjct: 199 LTAKHKAAILEYGILPEHRRSFSPIREL 226


>gi|47093922|ref|ZP_00231661.1| ribonuclease HII [Listeria monocytogenes str. 4b H7858]
 gi|47017708|gb|EAL08502.1| ribonuclease HII [Listeria monocytogenes str. 4b H7858]
          Length = 204

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 118/182 (64%), Gaps = 3/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG LAGPVV AA+IL  +    GINDSK++S  KR+ L+E I   AI I + 
Sbjct: 16  IAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALFETIKKEAIAIGVG 75

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
              H  ID+ NI++AT  A+  A++ L   P   LID  ++P        ++IKGD+ S+
Sbjct: 76  IIEHDVIDQVNIYEATKLAMREALDQLTPEPDFVLID--AMPLRYTEAELSLIKGDTKSI 133

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASIIAKVTRDRLM++  +KYP Y F +++GY T KH   +   G   IHR++F P+
Sbjct: 134 SIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGTKKHLLGLDTIGICPIHRISFAPV 193

Query: 205 RN 206
           + 
Sbjct: 194 KE 195


>gi|89900787|ref|YP_523258.1| ribonuclease HII [Rhodoferax ferrireducens T118]
 gi|122479254|sp|Q21WX6|RNH2_RHOFD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|89345524|gb|ABD69727.1| Ribonuclease H [Rhodoferax ferrireducens T118]
          Length = 207

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/180 (45%), Positives = 116/180 (64%), Gaps = 2/180 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84
           VAG+DE GRG LAGPVV AA+ILD      G+ DSK +S ++RE+L+++I + A+   I+
Sbjct: 20  VAGVDEAGRGPLAGPVVAAAVILDDLQPIKGLADSKILSARRREQLFDEIRAKALCCCIA 79

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + I++ NI +ATL A+  AVE L++ P   L+DG  +P  L  +A A++KGD++  
Sbjct: 80  QASVEEIERLNILQATLLAMRRAVEGLRLKPALVLVDGNRLPV-LTMRAEAIVKGDALVA 138

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKV RDR       +YP YGF  H GY T +H   + + G    HR TF P+
Sbjct: 139 AISAASILAKVHRDRWCAEVDVQYPQYGFARHKGYGTVQHLAALTKHGACPQHRKTFGPV 198


>gi|298372107|ref|ZP_06982097.1| ribonuclease HII [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275011|gb|EFI16562.1| ribonuclease HII [Bacteroidetes oral taxon 274 str. F0058]
          Length = 207

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 72/179 (40%), Positives = 110/179 (61%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA++L  +     +NDSK+++ K+R+ +   I  +A+  +++ 
Sbjct: 19  AGCDEAGRGCLAGPVFAAAVVLSADFECPHLNDSKQLTEKQRQNIRLVIEQNALAWAVAR 78

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
              + ID  NI KA++  ++ A++NL +IP   +IDG    +    +   ++KGD   LS
Sbjct: 79  IDAEEIDNINILKASILCMHKALDNLSIIPEHIIIDGNKFIQYRDVEYKTIVKGDGKYLS 138

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAAS++AK  RD  M   H +YP Y ++ + GYPT+KH+Q IKE G S  HR +F+ L
Sbjct: 139 IAAASVLAKTHRDDYMSYLHLQYPHYQWNINKGYPTSKHRQAIKEFGISPYHRRSFKLL 197


>gi|119952851|ref|YP_945060.1| ribonuclease HII [Borrelia turicatae 91E135]
 gi|119861622|gb|AAX17390.1| ribonuclease HII [Borrelia turicatae 91E135]
          Length = 182

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 107/178 (60%), Gaps = 1/178 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           + GIDEVGRG + GPV+ AA+I   N      ++DSKK++  KRE L   I  ++  + +
Sbjct: 3   ICGIDEVGRGCIFGPVLSAAVIFKGNPKFLNALDDSKKLNKSKREYLSSLILENSYYAFA 62

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
              ++ IDK NIH A+L A+  A E L +     L+DG+ IP+    +  A+IKGDSI  
Sbjct: 63  EVPNEIIDKINIHHASLLAMQIAYEKLNIECNLVLVDGKFIPKIKAKKIQAIIKGDSIIN 122

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            I AASIIAKV RD+LM    K YP Y    + GYPT +H+  IK+ G S +HR +F+
Sbjct: 123 EIKAASIIAKVQRDKLMDEYDKIYPLYALKKNKGYPTKEHKDAIKKYGISRLHRRSFQ 180


>gi|288801638|ref|ZP_06407080.1| ribonuclease HII [Prevotella melaninogenica D18]
 gi|288335680|gb|EFC74113.1| ribonuclease HII [Prevotella melaninogenica D18]
          Length = 200

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/181 (43%), Positives = 109/181 (60%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL P+     +NDSKK++ KKR  L E+I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPPDYQNELLNDSKKLTAKKRYALREEIERDAIAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143
            + + IDK NI  A+  A++ A++ L V P + ++DG      +DLP     ++KGD   
Sbjct: 73  VTPEEIDKINILNASFLAMHRALDQLSVRPEAVIVDGNRFKPYQDLPSTT--IVKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAASI+AK  RD  M    ++YP Y + S++GYPT KH+Q I E G +  HR ++  
Sbjct: 131 LSIAAASILAKTYRDDYMLSLAEEYPQYDWQSNMGYPTKKHRQAILEYGITPYHRKSYNL 190

Query: 204 L 204
           L
Sbjct: 191 L 191


>gi|225868570|ref|YP_002744518.1| ribonuclease HII [Streptococcus equi subsp. zooepidemicus]
 gi|225701846|emb|CAW99303.1| ribonuclease HII [Streptococcus equi subsp. zooepidemicus]
          Length = 257

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 89/204 (43%), Positives = 123/204 (60%), Gaps = 12/204 (5%)

Query: 14  LEAMVR------EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           LEAM+       +K    +AGIDEVGRG LAGPVV A +IL       G+NDSKKI   K
Sbjct: 53  LEAMLTYEQALYQKGFQAIAGIDEVGRGPLAGPVVAACVILPKGCTIKGLNDSKKIPKAK 112

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR 123
            E +Y+ I   A+ I +    +  ID+ NI++AT  A+  A+  L+     P   LID  
Sbjct: 113 HEAIYQAIQKKALGIGLGIIDNHTIDRVNIYEATKLAMIAAINQLKGSVSKPDYLLIDAM 172

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           ++   +P QA  +IKGD+ S+SIAAASI+AKVTRDRLM    K +P YGF  + GY T +
Sbjct: 173 TLEVSIPQQA--IIKGDASSMSIAAASIVAKVTRDRLMLDYDKTFPGYGFAKNAGYGTKE 230

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H Q + + G + IHR +F P++++
Sbjct: 231 HLQGLHQYGVTPIHRQSFEPIKSM 254


>gi|220925905|ref|YP_002501207.1| ribonuclease HII/HIII [Methylobacterium nodulans ORS 2060]
 gi|219950512|gb|ACL60904.1| ribonuclease HII/HIII [Methylobacterium nodulans ORS 2060]
          Length = 211

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 79/188 (42%), Positives = 111/188 (59%), Gaps = 6/188 (3%)

Query: 20  EKNMWPVA-GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK 74
           E   +PV  G DEVGRGAL GPV+VAA+  DP  +P      ++DSK++    R  L  +
Sbjct: 9   EAARYPVLIGCDEVGRGALCGPVIVAAVHFDPAALPPDLLEALDDSKRLDAATRRRLALR 68

Query: 75  ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
           +   A  + + AS   ID+ NI  ATLDA+  +V  L  I  S  +DGR +P  L  +  
Sbjct: 69  LRDCAAFAYAGASRALIDRINIRAATLDAMARSVRRLG-IAGSVAVDGRDLPPGLDGRVQ 127

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
           AVI G+ +   IAAASI+AKV RD LM +  +++P YG++ + GY TA H+  +  +GPS
Sbjct: 128 AVIGGERLVPQIAAASILAKVLRDHLMTVLARRHPAYGWERNAGYGTAAHRAAMLRQGPS 187

Query: 195 CIHRLTFR 202
             HR +FR
Sbjct: 188 PHHRRSFR 195


>gi|320449238|ref|YP_004201334.1| ribonuclease HII [Thermus scotoductus SA-01]
 gi|320149407|gb|ADW20785.1| ribonuclease HII [Thermus scotoductus SA-01]
          Length = 205

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 80/190 (42%), Positives = 107/190 (56%), Gaps = 9/190 (4%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           E + W     VAG+DE GRGA AGP+VV A+IL P   PF   DSK +  K+RE L E++
Sbjct: 9   EASFWSLGLRVAGVDEAGRGAWAGPIVVGAVILPPGRYPF--RDSKLLRPKERERLAEEV 66

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
              A+  ++  A    +D+  + KATL A   A++ L   P + + D   +   LP    
Sbjct: 67  RRVALAYALGVAEVGEVDRLGVLKATLLAAQRALDLLDPPPEALVTDYLQVATSLPL--L 124

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
           A  K D  S S+AAASI+AKV RDRLM    + YP YGF  H GY T +HQ+ +   GPS
Sbjct: 125 APPKADQNSPSVAAASILAKVHRDRLMVELDRLYPGYGFARHKGYGTPEHQEALLVLGPS 184

Query: 195 CIHRLTFRPL 204
            +HR  F P+
Sbjct: 185 PVHRRCFAPV 194


>gi|326559868|gb|EGE10268.1| ribonuclease HII [Moraxella catarrhalis 7169]
 gi|326570127|gb|EGE20172.1| ribonuclease HII [Moraxella catarrhalis BC8]
 gi|326570865|gb|EGE20889.1| ribonuclease HII [Moraxella catarrhalis BC7]
 gi|326576404|gb|EGE26313.1| ribonuclease HII [Moraxella catarrhalis O35E]
          Length = 248

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/208 (42%), Positives = 116/208 (55%), Gaps = 25/208 (12%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIIL-----------DPNNIPFGI-NDSKKISHKKREELY 72
           P+ GIDEVGRGAL G + V A+IL           D  N    + NDSKK+S K+RE+L+
Sbjct: 28  PIVGIDEVGRGALFGNMTVGAVILPNELSGRFDEIDLTNTKISLLNDSKKLSEKRREQLF 87

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVE------NLQVIPRSALIDGRSI 125
           + IT  A+  +I       ID+ NI++AT+  +  A+E      NL     + LIDG  +
Sbjct: 88  DIITDLALDYAIVDVPSTIIDQINIYQATMLGMKIAIETIIIKNNLNEKNTTILIDGNQL 147

Query: 126 PE------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           P       +   Q +A+IKGD+   SIA ASI+AKV RDRLM    K YP+Y  D H GY
Sbjct: 148 PSMDGSLGEHFHQIYAMIKGDATHSSIACASILAKVHRDRLMIQHAKSYPEYLLDKHKGY 207

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
            TAKH+  I E G    HR +F P+R L
Sbjct: 208 LTAKHKAAILEYGILPEHRRSFSPIREL 235


>gi|304319995|ref|YP_003853638.1| ribonuclease HII [Parvularcula bermudensis HTCC2503]
 gi|303298898|gb|ADM08497.1| ribonuclease HII [Parvularcula bermudensis HTCC2503]
          Length = 209

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/187 (41%), Positives = 109/187 (58%), Gaps = 5/187 (2%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITS--SAII 81
           P+ GIDE GRGA AGPVV AA+I  D    P  + DSK +   +RE L++ +++     +
Sbjct: 18  PICGIDEAGRGAWAGPVVAAAVICGDVKAYPEDLADSKTLREARREHLFDLLSARQDLRV 77

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF-AVIKGD 140
            +  AS   ID+  + KA   A+  AV+ L   P  AL+DG   P  LPC     ++KGD
Sbjct: 78  GVGVASVAEIDRMGVGKANWLAMARAVKALPSPPLGALVDGNYAPA-LPCPDIRPIVKGD 136

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
              L IAAASI+AKVTRDR+MR    ++P Y + ++ GYP   H+  ++E GPS  HR +
Sbjct: 137 GSCLVIAAASIVAKVTRDRIMRSLCPEHPAYRWSANKGYPAPVHRAALEEIGPSAHHRHS 196

Query: 201 FRPLRNL 207
           F P+  L
Sbjct: 197 FAPIAAL 203


>gi|148377935|ref|YP_001256811.1| ribonuclease H II [Mycoplasma agalactiae PG2]
 gi|148291981|emb|CAL59373.1| Ribonuclease H II [Mycoplasma agalactiae PG2]
          Length = 206

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 73/181 (40%), Positives = 110/181 (60%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DE GRG  AGP+VVA++I+    I   I DSKK+S K+R+ L+++I    I   I 
Sbjct: 15  IAGVDEAGRGCCAGPLVVASVIMPNGYINENIKDSKKLSAKQRDILFDEILKVCIDYHIV 74

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           +    Y+DK+N  K++ + +   +++L   P   + D   I E L  +   ++KGDSIS 
Sbjct: 75  TLPSSYVDKYNPKKSSKNGMKICIDSLNTKPDLVITDFEKIDE-LAIKQVNLVKGDSISF 133

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           ++A ASI+AKVTRDR M     KY +Y F+ H GY T +H + I + G S  HRLT++ +
Sbjct: 134 NVACASILAKVTRDRYMIKIANKYKEYEFEKHKGYCTKRHTESIIKYGASPEHRLTYKNV 193

Query: 205 R 205
           R
Sbjct: 194 R 194


>gi|313633474|gb|EFS00298.1| ribonuclease HII [Listeria seeligeri FSL N1-067]
          Length = 261

 Score =  130 bits (328), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 88/181 (48%), Positives = 115/181 (63%), Gaps = 3/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG LAGPVV AA+IL  N    GINDSK++S  KRE L+E I   AI + + 
Sbjct: 73  IAGVDEVGRGPLAGPVVAAAVILPENFSVVGINDSKQLSELKRETLFELIKQQAIAVGVG 132

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
              H  ID+ NI++AT  A+  A++ L   P   LID  ++P        ++IKGD+ S+
Sbjct: 133 IVEHDVIDEVNIYEATKLAMRMALDELNPSPDFILID--AMPLKYTEAELSLIKGDTKSI 190

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASIIAKVTRDRLM+     YP Y F S++GY T KH   +   G   IHRL+F P+
Sbjct: 191 SIAAASIIAKVTRDRLMKDYDVAYPGYDFASNMGYGTKKHLIGLDTIGVCPIHRLSFAPV 250

Query: 205 R 205
           +
Sbjct: 251 K 251


>gi|195978102|ref|YP_002123346.1| ribonuclease HII [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|259494073|sp|B4U2W6|RNH2_STREM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|195974807|gb|ACG62333.1| ribonuclease HII RnhB [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 260

 Score =  130 bits (328), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 88/206 (42%), Positives = 125/206 (60%), Gaps = 12/206 (5%)

Query: 14  LEAMVR------EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           LEAM+       +K    +AGIDEVGRG LAGP+V A +IL       G+NDSKKI   K
Sbjct: 56  LEAMLTYEQALYQKGFQAIAGIDEVGRGPLAGPIVAACVILPKGCTIKGLNDSKKIPKAK 115

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR 123
            E +Y+ I   A+ I +    +  ID+ NI++AT  A+  A+  L+     P   LID  
Sbjct: 116 HEAIYQAIQKKALGIGLGIIDNHTIDRVNIYEATKLAMIAAINQLKGSVSKPDYLLIDAM 175

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           ++   +P QA  +IKGD+ S+SIAAASI+AKVTRDRLM    K +P YGF  + GY T +
Sbjct: 176 TLEVPIPQQA--IIKGDASSMSIAAASIVAKVTRDRLMLDYDKAFPGYGFAKNAGYGTKE 233

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLSV 209
           H Q + + G + IHR +F P++++++
Sbjct: 234 HLQGLHQYGITPIHRQSFEPIKSMTL 259


>gi|166031980|ref|ZP_02234809.1| hypothetical protein DORFOR_01682 [Dorea formicigenerans ATCC
           27755]
 gi|166028433|gb|EDR47190.1| hypothetical protein DORFOR_01682 [Dorea formicigenerans ATCC
           27755]
          Length = 219

 Score =  130 bits (328), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 89/177 (50%), Positives = 118/177 (66%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84
           + GIDEVGRG LAGPVV  A+IL  +++   +NDSKK+S KKRE LY++I + A+ + I 
Sbjct: 39  ICGIDEVGRGPLAGPVVAGAVILPKDDMILYLNDSKKLSEKKREMLYDEIMNRAVATGIG 98

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID+ NI +AT +A+  A++NL+V P   L D  +IP+ +      +IKGD+ S+
Sbjct: 99  MASPARIDEINILQATYEAMRMAIDNLKVRPDILLNDAVTIPQ-VDILQVPIIKGDAKSI 157

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SIAAASIIAKVTRDRLM    K  P Y F S+ GY T  H   +KE GP+ IHR +F
Sbjct: 158 SIAAASIIAKVTRDRLMVEYDKVLPGYDFASNKGYGTKAHIAGLKELGPTPIHRRSF 214


>gi|94266071|ref|ZP_01289789.1| Ribonuclease H [delta proteobacterium MLMS-1]
 gi|93453354|gb|EAT03785.1| Ribonuclease H [delta proteobacterium MLMS-1]
          Length = 236

 Score =  130 bits (328), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 87/196 (44%), Positives = 122/196 (62%), Gaps = 11/196 (5%)

Query: 20  EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E+++W      VAG DE GRG LAGPVV A ++L P +      DSK++S  +R EL  +
Sbjct: 22  ERSLWAQGYRLVAGTDEAGRGPLAGPVVAACVVL-PVDCRSPFQDSKQLSASRRRELEAE 80

Query: 75  ITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPEDLPC 131
           + +   A + +  AS   ID  NI +A+L A+  AV  LQ  P   L+DG+ ++P +LP 
Sbjct: 81  LNALPGAAVGVGIASVAEIDGLNILQASLLAMRKAVTALQPPPDFLLVDGKFTVPLELPQ 140

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           QA  +IKGDS S SIAAASI+AK  RD+LM   H++YP Y F  H GY TA+H++++   
Sbjct: 141 QA--LIKGDSRSASIAAASIVAKERRDQLMADLHRQYPQYNFIQHKGYATAEHRRLLHRF 198

Query: 192 GPSCIHRLTFRPLRNL 207
           GP   HR +F+P+R L
Sbjct: 199 GPCPEHRRSFKPVREL 214


>gi|312112873|ref|YP_004010469.1| ribonuclease H [Rhodomicrobium vannielii ATCC 17100]
 gi|311218002|gb|ADP69370.1| Ribonuclease H [Rhodomicrobium vannielii ATCC 17100]
          Length = 239

 Score =  130 bits (328), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 82/180 (45%), Positives = 117/180 (65%), Gaps = 4/180 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           +AG+DE GRG  AGPVV AA+I      P G+NDSKK++  +RE L+ KI ++A + I  
Sbjct: 53  IAGVDEAGRGPWAGPVVAAAVIFH-GKPPAGVNDSKKLAPAERENLFSKIFAAAHVGIGI 111

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSISL 144
           A  + ID+ NI+ AT  A+  A+  L   P +ALIDG   P+ D+P +A  ++ GD++S+
Sbjct: 112 APVELIDEINIYHATHRAMCDAISALAFAPNAALIDGNRCPKLDIPSEA--LVSGDALSI 169

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASIIAKVTRDR+M      +P Y ++ + GY TA H   ++E G +  HR +FRP+
Sbjct: 170 SIAAASIIAKVTRDRMMTELASTFPPYRWERNKGYGTADHASALREYGVTLHHRRSFRPV 229


>gi|313678810|ref|YP_004056550.1| ribonuclease HIII [Mycoplasma bovis PG45]
 gi|312950535|gb|ADR25130.1| ribonuclease HIII [Mycoplasma bovis PG45]
          Length = 207

 Score =  130 bits (328), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 72/183 (39%), Positives = 112/183 (61%), Gaps = 2/183 (1%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           K+   +AG+DE GRG  AGP+VVA++I+  N +   INDSKK+S K+RE L+++I  + I
Sbjct: 10  KDYKLIAGVDEAGRGCCAGPLVVASVIMPKNYVNERINDSKKLSPKQREILFDEIIDNCI 69

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
              I +    Y+D++N  +++ + +   +++L   P   + D   I + L  +   ++KG
Sbjct: 70  DYYILTLPASYVDEYNPKQSSKNGMKICIDSLNAKPEVVITDFEKI-DHLDIKQINLVKG 128

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DSIS ++A ASI+AKVTRDR M     KY +Y F+ H GY T KH   I + G +  HRL
Sbjct: 129 DSISFNVACASILAKVTRDRYMIKIADKYKEYEFEKHKGYCTKKHTDAIIKYGVTAEHRL 188

Query: 200 TFR 202
           T++
Sbjct: 189 TYK 191


>gi|313836667|gb|EFS74381.1| ribonuclease HII [Propionibacterium acnes HL037PA2]
 gi|314928174|gb|EFS92005.1| ribonuclease HII [Propionibacterium acnes HL044PA1]
 gi|314972173|gb|EFT16270.1| ribonuclease HII [Propionibacterium acnes HL037PA3]
          Length = 204

 Score =  130 bits (328), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 107/191 (56%), Gaps = 6/191 (3%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72
           E  +    + PVAG DE GRGA AGP+V AA+ILD        G+ DSK +S  KRE L+
Sbjct: 4   ERALTRAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRITGLADSKTLSAAKREALF 63

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED-LP 130
           + I + A+ +S         D+  + +A +  +  AV  L + P   L DG   P D L 
Sbjct: 64  DVIINKALAVSWVRVEADECDRLGMQEADISGLRRAVARLGIEPGYVLSDG--FPVDGLT 121

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                + KGDS+   +AAASI+AKV RDR+M    ++ P Y F  H GY TA H++ ++E
Sbjct: 122 VPDLGMWKGDSVCACVAAASIVAKVVRDRIMIAMDREVPGYDFAVHKGYATALHRRRLEE 181

Query: 191 KGPSCIHRLTF 201
            GPSC HR+++
Sbjct: 182 LGPSCQHRMSY 192


>gi|218283550|ref|ZP_03489540.1| hypothetical protein EUBIFOR_02130 [Eubacterium biforme DSM 3989]
 gi|218215818|gb|EEC89356.1| hypothetical protein EUBIFOR_02130 [Eubacterium biforme DSM 3989]
          Length = 202

 Score =  130 bits (328), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 79/195 (40%), Positives = 110/195 (56%), Gaps = 10/195 (5%)

Query: 20  EKNMW----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           E + W     V G+DE GRG +AGP++VA +I         I+DSKK+S KKRE L++ I
Sbjct: 7   EHDYWDQNQSVLGMDEAGRGPIAGPLMVAGVIFPKGYHNELIDDSKKLSEKKREALFKTI 66

Query: 76  TSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQA 133
              A+   I     + IDK NI++AT +A+       Q      L D   +P+ D P QA
Sbjct: 67  IQDALYYQILVVDEKTIDKKNIYRATQEAMMEIANKAQC--DFVLSDAMPLPDIDKPFQA 124

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             ++KGD  SLSIAAASI+AKVTRDR M+   + YP YG   H GYPT  H + + + G 
Sbjct: 125 --IVKGDQKSLSIAAASILAKVTRDRWMKKLDEMYPQYGLAKHKGYPTKAHIEALNQYGL 182

Query: 194 SCIHRLTFRPLRNLS 208
              +R ++ P++ L 
Sbjct: 183 QDFYRRSYGPVKKLE 197


>gi|313675462|ref|YP_004053458.1| RNAse hii [Marivirga tractuosa DSM 4126]
 gi|312942160|gb|ADR21350.1| RNase HII [Marivirga tractuosa DSM 4126]
          Length = 209

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/187 (45%), Positives = 119/187 (63%), Gaps = 6/187 (3%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DEVGRG LAGPVV +A+IL  N     + DSKK+S KKR EL + I   +I  +I+ 
Sbjct: 15  AGCDEVGRGCLAGPVVASAVILPTNFSHPYLTDSKKLSAKKRAELVDVIKKESIAWAIAE 74

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIP-EDLPCQAFAVIKGDSIS 143
            S + ID+ NI KA+  A++ A++ L+  P   L+DG R  P  ++P +   VIKGDS  
Sbjct: 75  CSPEEIDQVNILKASFWAMHKALDQLKQKPDFLLVDGNRFTPYPEIPHEC--VIKGDSKY 132

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SIAAASI+AK  RD LMR   + +P YG++ +VGYPT +H+  I++ G +  HR +F+ 
Sbjct: 133 FSIAAASILAKEYRDNLMRDLAEIHPHYGWERNVGYPTKQHRAGIQKFGATEHHRKSFQL 192

Query: 204 L-RNLSV 209
           L R L +
Sbjct: 193 LPRQLEI 199


>gi|284032640|ref|YP_003382571.1| Ribonuclease H [Kribbella flavida DSM 17836]
 gi|283811933|gb|ADB33772.1| Ribonuclease H [Kribbella flavida DSM 17836]
          Length = 232

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/199 (39%), Positives = 109/199 (54%), Gaps = 6/199 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISHKKR 68
           +  E  +R   + P+AG+DE GRG  AGP+V AA+IL       IP  + DSK ++ K R
Sbjct: 17  YGYERALRRVGLDPIAGVDEAGRGPCAGPLVAAAVILPDGKRGQIPE-LADSKLLTAKAR 75

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E  Y++I   A+  S+ S      D+  +H A + A+  A+  L V P+  L DG  + +
Sbjct: 76  ERCYDEIRKRALAWSVVSIEADECDRLGMHVANVQALRRALFRLDVRPQYVLTDGFGV-D 134

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            L     A+ KGD ++  IAAAS++AKVTRDR+M      YP YGF  H GY T +HQ  
Sbjct: 135 GLGVPGLAIWKGDRVAACIAAASVVAKVTRDRIMEHWDTVYPQYGFAIHKGYCTPEHQAA 194

Query: 188 IKEKGPSCIHRLTFRPLRN 206
           + E GP   HR  F  +R 
Sbjct: 195 LDEYGPCPQHRRRFENVRR 213


>gi|21675069|ref|NP_663134.1| ribonuclease HII [Chlorobium tepidum TLS]
 gi|39932423|sp|Q8KAA5|RNH2_CHLTE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|21648308|gb|AAM73476.1| ribonuclease HII [Chlorobium tepidum TLS]
          Length = 205

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/188 (44%), Positives = 112/188 (59%), Gaps = 6/188 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYEKITSSA-I 80
           V GIDE GRG LAGPVV AA++   +  P GI    +DSKK++ + R+EL   I  SA  
Sbjct: 17  VCGIDEAGRGPLAGPVVAAAVVFPRHFRPTGIFAKLDDSKKLTAELRDELALAIRESAES 76

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            ++     + ID+ NI +AT+ A+  AVE+L   P   L+DG      LP     ++KGD
Sbjct: 77  WALGVVDAETIDRINILQATMLAMNLAVESLGSTPEFLLVDGNRFRPVLPIPYQTIVKGD 136

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S   SIAAAS++AK  RD LM  +  +YP+YGF+ H GYPTA+H + I   G   IHR +
Sbjct: 137 SKVFSIAAASVLAKTHRDELMTTSAAEYPEYGFEVHFGYPTARHVEAIARHGRCAIHRQS 196

Query: 201 FRPLRNLS 208
           F+ LR L 
Sbjct: 197 FK-LRKLG 203


>gi|118471655|ref|YP_886782.1| ribonuclease HII [Mycobacterium smegmatis str. MC2 155]
 gi|166226626|sp|A0QV44|RNH2_MYCS2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|118172942|gb|ABK73838.1| ribonuclease HII [Mycobacterium smegmatis str. MC2 155]
          Length = 272

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/197 (40%), Positives = 114/197 (57%), Gaps = 6/197 (3%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE+ +    + PVAG+DEVGRGA AGP+VVAA +L PN +     ++DSKK+  K+RE L
Sbjct: 20  LESALYRNGLGPVAGVDEVGRGACAGPLVVAACVLGPNRLESLAALDDSKKLGEKERERL 79

Query: 72  YEKITSSAIIS--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           +  I   A+    +   SH+ +D+  +H A ++ +  AV  L V P   L DG  +P  L
Sbjct: 80  FPLIRRYALAYHVVFIPSHE-VDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP-GL 137

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              +  VI GD+ +  IAAAS++AKV+RDRLM    +++P YGF  H GY T  H   + 
Sbjct: 138 SVPSLPVIGGDAAAACIAAASVLAKVSRDRLMVEMEEQHPGYGFAEHKGYITPAHTAALT 197

Query: 190 EKGPSCIHRLTFRPLRN 206
             GP   HR ++  +R 
Sbjct: 198 RHGPCVEHRYSYVNVRR 214


>gi|254455368|ref|ZP_05068797.1| ribonuclease HII [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082370|gb|EDZ59796.1| ribonuclease HII [Candidatus Pelagibacter sp. HTCC7211]
          Length = 190

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 109/184 (59%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82
           M  +AG+DEVGRG+L GPV  AA+IL+ N     + DSK IS  KRE L   I  ++I  
Sbjct: 1   MKIIAGVDEVGRGSLIGPVYAAAVILNKNIDKKLLKDSKTISKIKRELLSNYIKKNSIWV 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I  AS + IDK NI +A+L A+  A++ L+  P   LIDG  +P+       A+IKGD  
Sbjct: 61  IGKASVKEIDKINILQASLLAMKRAIKKLKKKPTQILIDGNKVPDIKNYNLKAIIKGDKK 120

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             SI+AASIIAKV RD+ +    K    Y +D + GY T +H + IK+ G S  HR TF 
Sbjct: 121 IPSISAASIIAKVARDKFITSLAKTNKGYHWDQNFGYGTKQHLKAIKKLGISKHHRKTFS 180

Query: 203 PLRN 206
           P+ N
Sbjct: 181 PINN 184


>gi|323484795|ref|ZP_08090152.1| ribonuclease HII [Clostridium symbiosum WAL-14163]
 gi|323401901|gb|EGA94242.1| ribonuclease HII [Clostridium symbiosum WAL-14163]
          Length = 219

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/177 (45%), Positives = 106/177 (59%), Gaps = 1/177 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDE GRG LAGPVV AA +L  + +   +NDSKK+S ++REEL+ +I   A+   + 
Sbjct: 32  ICGIDEAGRGPLAGPVVAAAAVLPKDAVILWLNDSKKLSERRREELFLEIREKAVAYGVG 91

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S   ID+ NI +AT +A+  AV  L   P   L D   IP     +   +IKGD+ S+
Sbjct: 92  IVSPAVIDEINILQATYEAMRQAVSQLPAEPDIFLNDAVMIPGINDKKQVRIIKGDAKSV 151

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SIAAAS++AKVTRD +M    K YP+YGF  H GY T  H   I+E G   IHR +F
Sbjct: 152 SIAAASVLAKVTRDHMMEEYDKLYPEYGFAKHKGYGTKAHMDAIREFGVCPIHRRSF 208


>gi|323141923|ref|ZP_08076783.1| ribonuclease HII [Phascolarctobacterium sp. YIT 12067]
 gi|322413590|gb|EFY04449.1| ribonuclease HII [Phascolarctobacterium sp. YIT 12067]
          Length = 283

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 126/200 (63%), Gaps = 4/200 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            +LE  + ++    +AG+DE GRG LAGP+V+AA+IL  +    G+NDSK++S  KR+ L
Sbjct: 62  LKLERELYDEGCELIAGVDEAGRGPLAGPLVIAAVILPKDVFISGLNDSKQLSAAKRDML 121

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y ++ + A+ I ++  S   ID+ NI+ AT   +   +ENL   P++ALID  ++P  +P
Sbjct: 122 YNEVMAKALDIEVNIVSVSNIDELNIYYATQQGMAQVLENLHCRPQAALID--AMPVKVP 179

Query: 131 CQAF-AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                +V+ GD++S SIAAASIIAKVTRDR+M      YP YGF  + GY +  H Q + 
Sbjct: 180 GMKIESVVHGDALSASIAAASIIAKVTRDRIMERLDLVYPAYGFAHNKGYGSGAHMQAVS 239

Query: 190 EKGPSCIHRLTFRPLRNLSV 209
           E G +  HR +F P++++ +
Sbjct: 240 ELGATRWHRRSFEPVKSMQL 259


>gi|22298205|ref|NP_681452.1| ribonuclease H [Thermosynechococcus elongatus BP-1]
 gi|39932394|sp|Q8DL36|RNH2_THEEB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|22294384|dbj|BAC08214.1| ribonuclease H [Thermosynechococcus elongatus BP-1]
          Length = 214

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/194 (42%), Positives = 117/194 (60%), Gaps = 10/194 (5%)

Query: 16  AMVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKRE 69
           +++ E+  W      V G+DEVGRG LAGPVV AA+IL  + +P   + DSK+++ ++R 
Sbjct: 5   SLIYEQAYWQQGYSRVVGVDEVGRGCLAGPVVAAAVILPVDCVPLPEVRDSKQLTARQRS 64

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-ALIDGRSIPE 127
            L+ +I   AI I I SAS   ID+ NI +AT  A+  A+   +V P   ALIDG+    
Sbjct: 65  RLFAQIYHQAIAIGIGSASVAEIDQVNILQATYRAMARALG--RVAPWDHALIDGKLTKT 122

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
               +  A+I GD  S SIA ASIIAKV RDR M    ++YP YG++ +VGY T +H+Q 
Sbjct: 123 APFERVTAIIGGDRHSYSIACASIIAKVRRDRFMARLARRYPQYGWERNVGYGTPEHRQA 182

Query: 188 IKEKGPSCIHRLTF 201
           + + G +  HR +F
Sbjct: 183 LDQYGLTPWHRRSF 196


>gi|51598308|ref|YP_072496.1| ribonuclease HII [Borrelia garinii PBi]
 gi|73917600|sp|Q662W7|RNH2_BORGA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|51572879|gb|AAU06904.1| ribonuclease H [Borrelia garinii PBi]
          Length = 181

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/179 (43%), Positives = 107/179 (59%), Gaps = 3/179 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
           + GIDEVGRG + GPV+ AA++    PN I   ++DSKK+  +KRE L   I  ++  + 
Sbjct: 2   ICGIDEVGRGCIFGPVLSAAVVFKKKPNFIK-ELDDSKKLKKEKREYLSSLILENSYYAF 60

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +  S+  I+K NIH ATL A+  A ENL++      +DG+ +P+       A+IKGDSI 
Sbjct: 61  AEISNIIIEKINIHNATLLAMQTAYENLKLNCSLVFVDGKFVPKITAKTVKAIIKGDSII 120

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             I AASIIAKV RD+LM    K YP Y    + GYPT +H+  IK+ G   +HR  F+
Sbjct: 121 DEIKAASIIAKVKRDKLMDEYDKIYPLYLLRKNKGYPTKEHKNAIKKYGVLSLHRRNFK 179


>gi|237734601|ref|ZP_04565082.1| ribonuclease HII [Mollicutes bacterium D7]
 gi|229382421|gb|EEO32512.1| ribonuclease HII [Coprobacillus sp. D7]
          Length = 206

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/185 (41%), Positives = 115/185 (62%), Gaps = 8/185 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI---IS 82
           + G+DEVGRG +AG +VVA ++         INDSK++S KKRE LY+ I  +A+   I 
Sbjct: 18  IIGLDEVGRGPMAGELVVAGVVFPKGFYDERINDSKQLSAKKREVLYDLIIENALYYDIE 77

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I S +   +D+ N+++A+   +   +E L+     AL D  ++P D P    ++IKGD+ 
Sbjct: 78  IISVAD--VDRLNVYQASKQGMEKCLELLKKEKMFALTD--AMPIDYP-DHLSIIKGDAK 132

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           S+SIA ASI+AKVTRDRLM     +YP+YGF+ H GY T  H++ + + G   IHR +F 
Sbjct: 133 SISIAGASILAKVTRDRLMEAYALEYPEYGFEKHKGYVTKAHKEALGKYGVCPIHRKSFG 192

Query: 203 PLRNL 207
           P++ +
Sbjct: 193 PVQKI 197


>gi|226366005|ref|YP_002783788.1| ribonuclease HII [Rhodococcus opacus B4]
 gi|254807984|sp|C1B2S6|RNH2_RHOOB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|226244495|dbj|BAH54843.1| ribonuclease HII [Rhodococcus opacus B4]
          Length = 226

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 111/191 (58%), Gaps = 4/191 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREEL 71
           +E+ +    + PVAG+DE GRGA AGP+VVAA +L P   P    ++DSKK++ + REEL
Sbjct: 19  MESALVRSGLGPVAGVDEAGRGACAGPLVVAACVLAPKPYPALARLDDSKKLTERTREEL 78

Query: 72  YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  IT  A+  S+ S     +D+  +H A ++ +  AV  L   P   L DG  +P  LP
Sbjct: 79  FPAITRLAVAWSVVSFPADEVDRMGVHVANIEGMRRAVAGLTTTPGYVLTDGFRVP-GLP 137

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD+ +  IAAAS++AKV+RDR+M    + +P YGF  H GY T  H   ++ 
Sbjct: 138 APSLPVIGGDAAAACIAAASVLAKVSRDRVMVAMDETHPGYGFAIHKGYNTPAHLAALEV 197

Query: 191 KGPSCIHRLTF 201
            GP   HR ++
Sbjct: 198 LGPCPEHRRSW 208


>gi|298480557|ref|ZP_06998754.1| ribonuclease HII [Bacteroides sp. D22]
 gi|295086253|emb|CBK67776.1| RNase HII [Bacteroides xylanisolvens XB1A]
 gi|298273378|gb|EFI14942.1| ribonuclease HII [Bacteroides sp. D22]
          Length = 200

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/181 (43%), Positives = 108/181 (59%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK++S K+R  L E I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLSEKQRYALREVIEKEAIAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143
            S + ID+ NI +A+  A++ AV+ L   P+  LIDG    +  D+P     V+KGD   
Sbjct: 73  VSPEEIDEINILRASFLAMHRAVDQLTTRPQHLLIDGNRFTKYPDIPHTT--VVKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAASI+AK  RD  M   H+++P Y +D + GYPT KH+  I E+G +  HR+TF  
Sbjct: 131 LSIAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTFNL 190

Query: 204 L 204
           L
Sbjct: 191 L 191


>gi|261400117|ref|ZP_05986242.1| ribonuclease HII [Neisseria lactamica ATCC 23970]
 gi|269210350|gb|EEZ76805.1| ribonuclease HII [Neisseria lactamica ATCC 23970]
          Length = 194

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/184 (43%), Positives = 110/184 (59%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
            AG+DE GRG L G V  AA+IL +  ++P G+ DSKK+S KKR+ L E I + A     
Sbjct: 5   TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKNQAAAWHV 63

Query: 85  SASH-QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +A+  + I   NI  AT+ A+  A++ L V P    IDG  IPE L   A AV+KGDS  
Sbjct: 64  AAAGPEEIAGLNILHATMLAMKRAIDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKI 123

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           + I+AAS++AK  RD  M    +++P YGFD H GY T +H + +++ G    HR  F P
Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALEKYGVLPEHRRDFAP 183

Query: 204 LRNL 207
           +RNL
Sbjct: 184 VRNL 187


>gi|313638164|gb|EFS03420.1| ribonuclease HII [Listeria seeligeri FSL S4-171]
          Length = 261

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/181 (48%), Positives = 115/181 (63%), Gaps = 3/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG LAGPVV AA+IL  N    GINDSK++S  KRE L+E I   AI + + 
Sbjct: 73  IAGVDEVGRGPLAGPVVAAAVILPENFSVVGINDSKQLSELKRETLFELIKQQAIAVGVG 132

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
              H  ID+ NI++AT  A+  A++ L   P   LID  ++P        ++IKGD+ S+
Sbjct: 133 IIEHDVIDEVNIYEATKLAMRMALDELNPSPDFILID--AMPLKYTEAELSLIKGDTKSI 190

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASIIAKVTRDRLM+     YP Y F S++GY T KH   +   G   IHRL+F P+
Sbjct: 191 SIAAASIIAKVTRDRLMKDYDVAYPGYDFASNMGYGTKKHLIGLDTIGVCPIHRLSFAPV 250

Query: 205 R 205
           +
Sbjct: 251 K 251


>gi|220905054|ref|YP_002480366.1| Ribonuclease H [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219869353|gb|ACL49688.1| Ribonuclease H [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 230

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/192 (41%), Positives = 109/192 (56%), Gaps = 16/192 (8%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
            AGIDE GRG LAGPVV  A+IL P     G+ DSK  + ++R  L  +I  SA+   + 
Sbjct: 26  TAGIDEAGRGCLAGPVVAGAVILPPEYDLPGLADSKACTARQRGLLAPRIKKSALAWGLG 85

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPE-------------DLP 130
                 ID+ NI +AT +A+  AV +L++ P+  L+DG + IPE              LP
Sbjct: 86  IVWPDRIDRINILQATFEAMSMAVRHLRITPQILLVDGNKVIPEPALAPQWLRAHGDTLP 145

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            Q  A++ GD+   +I+AASI+AK  RD LM    K++P YGF  H GY T +H + ++ 
Sbjct: 146 LQR-AIVGGDAAEPAISAASILAKTCRDTLMTSLDKRWPGYGFAIHKGYGTKEHYEALRR 204

Query: 191 KGPSCIHRLTFR 202
            GP   HRLTFR
Sbjct: 205 LGPCPQHRLTFR 216


>gi|256383963|gb|ACU78533.1| ribonuclease HII [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384795|gb|ACU79364.1| ribonuclease HII [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455877|gb|ADH22112.1| ribonuclease HII [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 207

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/202 (36%), Positives = 121/202 (59%), Gaps = 2/202 (0%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           +R  F+ + +  + N+  ++G DE GRG LAGP+VVA++IL  +     I DSKK++ K 
Sbjct: 3   DRKLFD-DQIKLDHNITYLSGSDEAGRGCLAGPLVVASVILKADYFNPLIKDSKKLNPKT 61

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R+ L+++I  + +   I   S + +D+ N  +A+L      + NL++ P   LIDG    
Sbjct: 62  RQLLFDEIIKNCLDYQIIVISSKQVDELNPLQASLLGFKTTISNLKITPDLGLIDGNQNI 121

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
                +  ++IKGD  S SIA +SI+AKVTRD+++    + YP+YGF SH GY T +H  
Sbjct: 122 NLENIKTLSIIKGDDKSFSIACSSILAKVTRDKILDQYDQIYPNYGFKSHKGYCTKQHLL 181

Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208
            I++ G   IHR +++P++ +S
Sbjct: 182 AIQKYGILDIHRKSYKPIKKIS 203


>gi|167768005|ref|ZP_02440058.1| hypothetical protein CLOSS21_02548 [Clostridium sp. SS2/1]
 gi|167710334|gb|EDS20913.1| hypothetical protein CLOSS21_02548 [Clostridium sp. SS2/1]
 gi|291561007|emb|CBL39807.1| Ribonuclease HII [butyrate-producing bacterium SSC/2]
          Length = 218

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/192 (46%), Positives = 119/192 (61%), Gaps = 3/192 (1%)

Query: 12  FELEAMVRE-KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           +E+ +  RE  N   + GIDEVGRG  AGPVV AA+IL  +     +NDSKK+S KKRE 
Sbjct: 23  YEMFSFEREYGNHQAICGIDEVGRGPFAGPVVAAAVILPKDCDILYLNDSKKLSEKKREL 82

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY++I   A+ I I  +S + ID+ NI +AT  A+  A+  L + P   L D  +IP D+
Sbjct: 83  LYDEIYEKAVAIGIGMSSEEVIDEINILQATYKAMQQAISKLSIKPDLLLNDAVTIP-DV 141

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             +   +IKGD+ S SIAAASI+AKVTRDR+M+     YP Y F  + GY T  H + IK
Sbjct: 142 EIEQIPIIKGDAKSASIAAASIVAKVTRDRMMKEYDIIYPGYDFAKNKGYGTKAHIEGIK 201

Query: 190 EKGPSCIHRLTF 201
           ++G   IHR TF
Sbjct: 202 KQGICDIHRRTF 213


>gi|148238709|ref|YP_001224096.1| ribonuclease HII [Synechococcus sp. WH 7803]
 gi|189043669|sp|A5GIN4|RNH2_SYNPW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|147847248|emb|CAK22799.1| Ribonuclease HII [Synechococcus sp. WH 7803]
          Length = 194

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/180 (41%), Positives = 105/180 (58%), Gaps = 7/180 (3%)

Query: 28  GIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82
           G+DEVGRG L GPV  AA+ L    D      G+ DSK +S K+R +L   I + A   +
Sbjct: 4   GVDEVGRGCLFGPVFAAAVSLTGAADAELTALGLTDSKALSAKRRADLVPHIQAKASAWA 63

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL-PCQAFAVIKGDS 141
           +   S + ID H I  AT  A+  A++ L + P   L+DG  +P  L P     +++GDS
Sbjct: 64  LGQGSAREIDAHGIRVATELAMLRALQKLPIQPELVLVDG-VLPLRLWPGAQRTIVRGDS 122

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
              SIAAAS++AKV RD LM    +++P+YGF+ H GY TA H+Q +   GP+ +HR +F
Sbjct: 123 QEASIAAASVLAKVARDGLMCRLAERFPEYGFERHAGYGTALHRQALITSGPTALHRKSF 182


>gi|291459085|ref|ZP_06598475.1| ribonuclease HII [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418339|gb|EFE92058.1| ribonuclease HII [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 247

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/185 (41%), Positives = 109/185 (58%), Gaps = 6/185 (3%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
           N+  + G+DE GRG LAGPVV A  +L  + +   ++DSKK+S K+RE L+ +IT  A+ 
Sbjct: 34  NLSLIGGVDEAGRGPLAGPVVAACCVLPKDALILYLDDSKKLSEKRRELLFPEITKKALA 93

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAV----ENLQVIPRSALIDGRSIPEDLPCQAFAV 136
             +     + ID+ NI  A+ +A+  ++      L   P   L D  +IP  +      +
Sbjct: 94  FGVGIVGEKRIDEINILNASYEAMRLSILSVSSKLGRPPELLLNDAVTIP-GIEIPQLPI 152

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           I+GDS SLSIAAAS+IAKV RDRLM    +++P YGF  H GY TA H++ I  KG   I
Sbjct: 153 IRGDSKSLSIAAASVIAKVIRDRLMLRYDREFPGYGFARHKGYGTALHREKILSKGLCRI 212

Query: 197 HRLTF 201
           HR +F
Sbjct: 213 HRRSF 217


>gi|213964538|ref|ZP_03392738.1| ribonuclease HII [Corynebacterium amycolatum SK46]
 gi|213952731|gb|EEB64113.1| ribonuclease HII [Corynebacterium amycolatum SK46]
          Length = 205

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/195 (38%), Positives = 105/195 (53%), Gaps = 4/195 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREEL 71
           +E  + ++ + PVAG+DE GRGA AGP+V+AA  L    I     + DSKK++   RE L
Sbjct: 1   MEVALAKRGLGPVAGVDEAGRGACAGPIVIAACCLPERPIAELDKLTDSKKLTPAARERL 60

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   AI   +++    YID+  I  A +  +  AV  L+  P   L D   +     
Sbjct: 61  FPLIQRFAISFCVTTIPASYIDQFGIQDANVTGMRRAVAGLEQRPGYVLTDALKV-SGFT 119

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                VI GDS    IAAAS++AKVTRDR+M    +KYPDYG   H GY TA H + I  
Sbjct: 120 APYLPVIGGDSTCRCIAAASVLAKVTRDRIMVDLSEKYPDYGLAGHKGYGTASHMEAISR 179

Query: 191 KGPSCIHRLTFRPLR 205
            G +  HR ++R +R
Sbjct: 180 HGATPEHRWSYRNVR 194


>gi|317058954|ref|ZP_07923439.1| ribonuclease HII [Fusobacterium sp. 3_1_5R]
 gi|313684630|gb|EFS21465.1| ribonuclease HII [Fusobacterium sp. 3_1_5R]
          Length = 211

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/183 (44%), Positives = 112/183 (61%), Gaps = 8/183 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAIISIS 84
           + G+DE GRG LAGPVV AA +L   +     I DSKK++ KKRE L+  I     + I 
Sbjct: 21  IVGVDEAGRGPLAGPVVAAATLLKQYDRSLDSIQDSKKLTEKKREALFSVIPQFFYVGIG 80

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQ----VIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            AS + I+K+NI  AT  A+  A+ NL+    +   + L+DG     +   +  AV+KGD
Sbjct: 81  QASVEEIEKYNILNATFLAMRRALANLEEQVEIQDATILVDGNFTIRECQRKQEAVVKGD 140

Query: 141 SISLSIAAASIIAKVTRD-RLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHR 198
           + SLSIAAASI+AKVTRD +L+ +A K+YPDY F+ H GY T  H++ I   GP   +HR
Sbjct: 141 AKSLSIAAASIMAKVTRDHKLVELA-KQYPDYLFEKHKGYGTKVHREKILSLGPIPGVHR 199

Query: 199 LTF 201
            +F
Sbjct: 200 DSF 202


>gi|309379099|emb|CBX22230.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 194

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/184 (43%), Positives = 110/184 (59%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
            AG+DE GRG L G V  AA+IL +  ++P G+ DSKK+S KKR+ L + I + A     
Sbjct: 5   TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAKIIKNQAAAWHV 63

Query: 85  SASH-QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +A+  + I   NI  AT+ A+  A++ L V P    IDG  IPE L   A AV+KGDS  
Sbjct: 64  AAAGPEEIASLNILHATMLAMKRAIDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKI 123

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           + I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P
Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183

Query: 204 LRNL 207
           +RNL
Sbjct: 184 VRNL 187


>gi|134102484|ref|YP_001108145.1| ribonuclease HII [Saccharopolyspora erythraea NRRL 2338]
 gi|189043652|sp|A4FME5|RNH2_SACEN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|133915107|emb|CAM05220.1| ribonuclease HII [Saccharopolyspora erythraea NRRL 2338]
          Length = 228

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/191 (41%), Positives = 114/191 (59%), Gaps = 4/191 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREEL 71
           +++ +  + + PVAG+DE GRGA AGP+VVAA  L P +     G+ DSK +S  +RE L
Sbjct: 1   MQSALDRRGLGPVAGVDEAGRGACAGPLVVAACALKPGDGRRFEGLTDSKVLSPAERERL 60

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I + A+ +S+       +D   IH A L+ +  AV  L V P   L DG  +P  L 
Sbjct: 61  YDVIQAKALSLSVIVIPADEVDALGIHVANLEGMRRAVAQLSVAPGYVLTDGFRVP-GLG 119

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             + AV+KGD ++  +AAAS++AKVTRDR+M   H+++P YGFD H GY T+ H   + E
Sbjct: 120 APSVAVVKGDLVAACVAAASVLAKVTRDRIMTGLHEQFPVYGFDEHKGYCTSDHTARLTE 179

Query: 191 KGPSCIHRLTF 201
            GP   HR  +
Sbjct: 180 HGPCEEHRWCY 190


>gi|190573489|ref|YP_001971334.1| putative ribonuclease HII [Stenotrophomonas maltophilia K279a]
 gi|190011411|emb|CAQ45029.1| putative ribonuclease HII [Stenotrophomonas maltophilia K279a]
          Length = 223

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/197 (40%), Positives = 119/197 (60%), Gaps = 4/197 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREE 70
           F+  A+V  + +  VAG+DE GRG LAGPV VAA++ DP      G++DSK+++  +RE+
Sbjct: 14  FDGAAVVEPERL--VAGVDEAGRGPLAGPVAVAAVVFDPARPRINGLDDSKQLTAARREQ 71

Query: 71  LYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L+++I   A+   +       ID+ NI++ATL  +   V  +  +   A IDG  +P+ L
Sbjct: 72  LHDRIIERALAWHVVLVDVDTIDRLNIYQATLQGMRDVVAAVAHVAGFARIDGNVVPKGL 131

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              A A++ GD I  +I AASI+AKV+RDR M+  H ++P YGF+ H GY T  H   ++
Sbjct: 132 VLPAQALVGGDGIDRAIMAASILAKVSRDRYMQDVHARHPQYGFEHHKGYGTPAHLAALR 191

Query: 190 EKGPSCIHRLTFRPLRN 206
           E GP   HR +F P+R 
Sbjct: 192 EHGPCMEHRRSFAPVRE 208


>gi|319649582|ref|ZP_08003738.1| hypothetical protein HMPREF1013_00342 [Bacillus sp. 2_A_57_CT2]
 gi|317398744|gb|EFV79426.1| hypothetical protein HMPREF1013_00342 [Bacillus sp. 2_A_57_CT2]
          Length = 259

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/196 (44%), Positives = 119/196 (60%), Gaps = 3/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E   R +    +AGIDEVGRG LAGPVV AA+IL  +    G++DSKK+   KREE  
Sbjct: 61  QYEVRYRSQGFQFIAGIDEVGRGPLAGPVVAAAVILPEDFFLPGLDDSKKVPESKREEFS 120

Query: 73  EKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E I + +A  S+     + ID+ NI +AT  A+  A+E L   P   L D   +    P 
Sbjct: 121 EIIKAKAAAFSVGIIDPEEIDRINIFEATKKAMLSAIEGLSPKPDFLLADAVKLLTPYPM 180

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +A  +IKGD  S+SIAAASIIAKVTRDR+M    K++P YGF+ ++GY T +H + I   
Sbjct: 181 EA--IIKGDGKSISIAAASIIAKVTRDRMMAEIGKEFPQYGFEKNMGYGTKEHLEAITLH 238

Query: 192 GPSCIHRLTFRPLRNL 207
           G S  HR +F P++NL
Sbjct: 239 GISPYHRKSFAPIKNL 254


>gi|315302908|ref|ZP_07873644.1| ribonuclease HII [Listeria ivanovii FSL F6-596]
 gi|313628722|gb|EFR97119.1| ribonuclease HII [Listeria ivanovii FSL F6-596]
          Length = 261

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/195 (44%), Positives = 123/195 (63%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E  + ++ +  +AG+DEVGRG LAGPVV AA+IL  +    GINDSK++S  KR+ L+
Sbjct: 60  QYETDLYKRGVKYIAGVDEVGRGPLAGPVVAAAVILPEHFSVIGINDSKQLSEAKRDILF 119

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           + IT  A+ + I    H  ID+ NI++AT  A+  A++ L   P   LID  ++P     
Sbjct: 120 DLITEQALAVGIGIIEHDVIDQVNIYEATKLAMRKALDELNPKPDFVLID--AMPLKYTE 177

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASIIAKVTRD+LM+   K YP Y F S++GY T KH   +   
Sbjct: 178 SELSLIKGDTKSISIAAASIIAKVTRDKLMKEYEKTYPGYDFASNMGYGTKKHLYGLDTI 237

Query: 192 GPSCIHRLTFRPLRN 206
           G   IHRL+F P++ 
Sbjct: 238 GICPIHRLSFSPVKE 252


>gi|169630303|ref|YP_001703952.1| ribonuclease HII [Mycobacterium abscessus ATCC 19977]
 gi|238688907|sp|B1MDH9|RNH2_MYCA9 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|169242270|emb|CAM63298.1| Ribonuclease HII (RNase HII) [Mycobacterium abscessus]
          Length = 234

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/199 (40%), Positives = 113/199 (56%), Gaps = 4/199 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE  +    + PVAG+DE GRGA AGP+V+AA +L  N       +NDSKK++ K RE L
Sbjct: 20  LELTLDRVGLGPVAGVDEAGRGACAGPLVIAACVLGSNQRKSLAALNDSKKLTEKMRETL 79

Query: 72  YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A    + S     +D+  +H A ++ +  AV  L V P   L DG  +P  LP
Sbjct: 80  FPLICRYAEAYHVVSVPADEVDRIGVHVANIEGMRRAVAGLGVKPGYVLTDGFRVP-GLP 138

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD+ +  IAAAS++AKV+RDR+M      +P YGF  H GY TA H + ++ 
Sbjct: 139 VPSLPVIGGDASAACIAAASVLAKVSRDRVMVNMDSDHPGYGFAVHKGYSTAVHTEALRR 198

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            GPS  HR +F  +RN ++
Sbjct: 199 LGPSAQHRQSFVNVRNAAM 217


>gi|167747194|ref|ZP_02419321.1| hypothetical protein ANACAC_01908 [Anaerostipes caccae DSM 14662]
 gi|167654154|gb|EDR98283.1| hypothetical protein ANACAC_01908 [Anaerostipes caccae DSM 14662]
          Length = 225

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/192 (46%), Positives = 118/192 (61%), Gaps = 3/192 (1%)

Query: 12  FELEAMVREKNMWP-VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           +E+ +  RE   +  + GIDEVGRG  AGPVV AA+IL  +     +NDSKK+S KKRE 
Sbjct: 30  YEMFSYEREYERYSHICGIDEVGRGPFAGPVVAAAVILPRDCDILYLNDSKKVSPKKREA 89

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY++I   A+ + I  AS + ID+ NI  AT +A+  AV NL V P   L D  +IP  +
Sbjct: 90  LYDEIYEKALAVGIGMASEKVIDEINILNATYEAMRTAVSNLPVKPDLLLNDAVTIP-GI 148

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             +   +IKGD+ S SIAAASI+AKVTRDR+M    + YP Y F  + GY T  H + IK
Sbjct: 149 GTEQVPIIKGDAKSASIAAASIVAKVTRDRMMEEYDQLYPQYQFAKNKGYGTKAHIEAIK 208

Query: 190 EKGPSCIHRLTF 201
           E G   +HR +F
Sbjct: 209 EYGICTLHRKSF 220


>gi|313667504|ref|YP_004047788.1| ribonuclease HII [Neisseria lactamica ST-640]
 gi|313004966|emb|CBN86394.1| ribonuclease HII [Neisseria lactamica 020-06]
          Length = 212

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/184 (43%), Positives = 110/184 (59%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
            AG+DE GRG L G V  AA+IL +  ++P G+ DSKK+S KKR+ L + I + A     
Sbjct: 23  TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAKIIKNQAAAWHV 81

Query: 85  SASH-QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +A+  + I   NI  AT+ A+  A++ L V P    IDG  IPE L   A AV+KGDS  
Sbjct: 82  AAAGPEEIASLNILHATMLAMKRAIDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKI 141

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           + I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P
Sbjct: 142 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 201

Query: 204 LRNL 207
           +RNL
Sbjct: 202 VRNL 205


>gi|257452411|ref|ZP_05617710.1| ribonuclease HII [Fusobacterium sp. 3_1_5R]
          Length = 210

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/183 (44%), Positives = 112/183 (61%), Gaps = 8/183 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAIISIS 84
           + G+DE GRG LAGPVV AA +L   +     I DSKK++ KKRE L+  I     + I 
Sbjct: 20  IVGVDEAGRGPLAGPVVAAATLLKQYDRSLDSIQDSKKLTEKKREALFSVIPQFFYVGIG 79

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQ----VIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            AS + I+K+NI  AT  A+  A+ NL+    +   + L+DG     +   +  AV+KGD
Sbjct: 80  QASVEEIEKYNILNATFLAMRRALANLEEQVEIQDATILVDGNFTIRECQRKQEAVVKGD 139

Query: 141 SISLSIAAASIIAKVTRD-RLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHR 198
           + SLSIAAASI+AKVTRD +L+ +A K+YPDY F+ H GY T  H++ I   GP   +HR
Sbjct: 140 AKSLSIAAASIMAKVTRDHKLVELA-KQYPDYLFEKHKGYGTKVHREKILSLGPIPGVHR 198

Query: 199 LTF 201
            +F
Sbjct: 199 DSF 201


>gi|323691868|ref|ZP_08106122.1| ribonuclease [Clostridium symbiosum WAL-14673]
 gi|323504075|gb|EGB19883.1| ribonuclease [Clostridium symbiosum WAL-14673]
          Length = 219

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/177 (45%), Positives = 106/177 (59%), Gaps = 1/177 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDE GRG LAGPVV AA +L  + +   +NDSKK+S ++REEL+ +I   A+   + 
Sbjct: 32  ICGIDEAGRGPLAGPVVAAAAVLPKDAVILWLNDSKKLSERRREELFLEIREKAVAYGVG 91

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S   ID+ NI +AT +A+  AV  L   P   L D   IP     +   +IKGD+ S+
Sbjct: 92  IVSPAVIDEINILQATYEAMRQAVSQLPAEPDIFLNDAVMIPGIDDKKQVRIIKGDAKSV 151

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SIAAAS++AKVTRD +M    K YP+YGF  H GY T  H   I+E G   IHR +F
Sbjct: 152 SIAAASVLAKVTRDHMMEEYDKLYPEYGFAKHKGYGTKAHMVAIREFGVCPIHRRSF 208


>gi|293370450|ref|ZP_06617003.1| ribonuclease HII [Bacteroides ovatus SD CMC 3f]
 gi|292634442|gb|EFF52978.1| ribonuclease HII [Bacteroides ovatus SD CMC 3f]
          Length = 200

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/181 (43%), Positives = 107/181 (59%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK++S K+R  L E I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLSEKQRYALREVIEKEAIAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143
            S + ID+ NI +A+  A++ AV+ L   P+  LIDG    +  D+P     V+KGD   
Sbjct: 73  VSPEEIDEINILRASFLAMHRAVDQLTTRPQHLLIDGNRFTKYPDIPHTT--VVKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAASI+AK  RD  M   H ++P Y +D + GYPT KH+  I E+G +  HR+TF  
Sbjct: 131 LSIAAASILAKTYRDDYMNRLHDEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTFNL 190

Query: 204 L 204
           L
Sbjct: 191 L 191


>gi|317498401|ref|ZP_07956696.1| ribonuclease HII [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894295|gb|EFV16482.1| ribonuclease HII [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 218

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/192 (45%), Positives = 119/192 (61%), Gaps = 3/192 (1%)

Query: 12  FELEAMVRE-KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           +E+ +  RE  +   + GIDEVGRG  AGPVV AA+IL  +     +NDSKK+S KKRE 
Sbjct: 23  YEMFSFEREYGDHQAICGIDEVGRGPFAGPVVAAAVILPKDCDILYLNDSKKLSEKKREL 82

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY++I   A+ I I  +S + ID+ NI +AT  A+  A+  L + P   L D  +IP D+
Sbjct: 83  LYDEIYEKAVAIGIGMSSEEVIDEINILQATYKAMQQAISKLSIKPDLLLNDAVTIP-DV 141

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             +   +IKGD+ S SIAAASI+AKVTRDR+M+     YP Y F  + GY T  H + IK
Sbjct: 142 EIEQVPIIKGDAKSASIAAASIVAKVTRDRMMKEYDTIYPGYDFAKNKGYGTKAHIEGIK 201

Query: 190 EKGPSCIHRLTF 201
           ++G   IHR TF
Sbjct: 202 KQGICDIHRRTF 213


>gi|295110185|emb|CBL24138.1| Ribonuclease HII [Ruminococcus obeum A2-162]
          Length = 251

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/199 (43%), Positives = 123/199 (61%), Gaps = 6/199 (3%)

Query: 8   ERPHFELEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           E     +E M++ ++ +     + GIDEVGRG LAGPVV  A+IL  ++    +NDSKK+
Sbjct: 49  EAEKLRMEQMMQYEHKYEHLGYLCGIDEVGRGPLAGPVVACAVILPADHQILYLNDSKKL 108

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           +  KREELY+ I   A+ + I       ID+ NI +AT +A+  A+  L+V P+  L D 
Sbjct: 109 TAHKREELYDVILREAVAVGIGMVGPAKIDEINILQATYEAMRQAISKLKVTPQLLLNDA 168

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
            +IP  +      +IKGD+ S SIAAASI+AKVTRDRLM    K  P YGF S+ GY + 
Sbjct: 169 VTIP-GVEVPQVPIIKGDAKSASIAAASIVAKVTRDRLMVEYDKTLPGYGFASNKGYGST 227

Query: 183 KHQQVIKEKGPSCIHRLTF 201
           +H + +K+ GP+ IHR+TF
Sbjct: 228 EHIEALKKFGPTPIHRVTF 246


>gi|216264047|ref|ZP_03436041.1| ribonuclease HII [Borrelia afzelii ACA-1]
 gi|215980091|gb|EEC20913.1| ribonuclease HII [Borrelia afzelii ACA-1]
          Length = 181

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/179 (42%), Positives = 108/179 (60%), Gaps = 3/179 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
           + GIDEVGRG + GP++ AA++    PN I   ++DSKK++ +KRE L   I  ++  + 
Sbjct: 2   ICGIDEVGRGCIFGPILSAAVVFKKKPNFIK-ELDDSKKLTKEKREYLSSLILENSYYAF 60

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +  S+  I+K NIH A+L A+  A ENL++      IDG+ +P+       A+IKGDSI 
Sbjct: 61  AEISNITIEKINIHNASLLAMQTAYENLKLNCNLVFIDGKFVPKISAKNVKAIIKGDSII 120

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             I AASIIAKV RD+LM    K YP Y    + GYPT +H+  IK+ G   +HR  F+
Sbjct: 121 DEIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFK 179


>gi|224532055|ref|ZP_03672687.1| ribonuclease HII [Borrelia valaisiana VS116]
 gi|224511520|gb|EEF81926.1| ribonuclease HII [Borrelia valaisiana VS116]
          Length = 181

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/179 (41%), Positives = 108/179 (60%), Gaps = 3/179 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
           + GIDEVGRG + GP++ AA++    P+ +   ++DSKK+  +KRE LY  I  ++  + 
Sbjct: 2   ICGIDEVGRGCIFGPILSAAVVFKKKPSFVK-ELDDSKKLKKEKREYLYSLILENSYYAF 60

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +  S+  I+K NIH A+L A+  A ENL++      +DG+ +P+       A+IKGDSI 
Sbjct: 61  AEISNITIEKINIHNASLLAMQTAYENLKLNCSLVFVDGKFVPKITAKTVKAIIKGDSII 120

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             I AASIIAKV RD+LM    K YP Y    + GYPT +H+  IK+ G   +HR  F+
Sbjct: 121 DEIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFK 179


>gi|227499923|ref|ZP_03930016.1| ribonuclease H [Anaerococcus tetradius ATCC 35098]
 gi|227218032|gb|EEI83305.1| ribonuclease H [Anaerococcus tetradius ATCC 35098]
          Length = 209

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/177 (42%), Positives = 107/177 (60%), Gaps = 3/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AGIDEVGRG LAGPVV  A+I+  ++   G+ DSKK++ KK   L +KI +  +  +  
Sbjct: 21  IAGIDEVGRGPLAGPVVTCALIMKKDSKIEGVTDSKKLTRKKMLVLKDKILADCLTYAYG 80

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A+   IDK NI  AT  A+  A+ NL++ P   LID   I  DLP     ++KGD    
Sbjct: 81  YANSLLIDKLNIKNATHKAMEDALNNLKIRPEIVLIDAERINTDLP--QMNIVKGDLNEY 138

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            I+ ASI+AK+ RD +M    K Y  YGF++++GY T KH + +++ G + IHR TF
Sbjct: 139 VISCASILAKIRRDDIMINFSKIYKGYGFETNMGYGTKKHYEGLEKYGETPIHRQTF 195


>gi|224536639|ref|ZP_03677178.1| hypothetical protein BACCELL_01515 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521730|gb|EEF90835.1| hypothetical protein BACCELL_01515 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 201

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/181 (43%), Positives = 108/181 (59%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++  +R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEHQRYALREVIEKEALAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143
            S + IDK NI  A+  A++ AV+ L++ P+  LIDG      +DLP     VIKGD   
Sbjct: 73  VSPEEIDKINILNASFLAMHRAVDQLKMRPQHLLIDGNRFKKYQDLPHTT--VIKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAAS++AK  RD  M   H+++P Y +D + GYPT KH+  I E+G +  HR+TF  
Sbjct: 131 LSIAAASVLAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAISERGTTPYHRMTFNL 190

Query: 204 L 204
           L
Sbjct: 191 L 191


>gi|313665432|ref|YP_004047303.1| ribonuclease HII [Mycoplasma leachii PG50]
 gi|312949606|gb|ADR24202.1| ribonuclease HII [Mycoplasma leachii PG50]
          Length = 207

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/188 (39%), Positives = 113/188 (60%), Gaps = 1/188 (0%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
           N+  ++G DE GRG LAG +VVA++IL  +     I DSKK++ K R+ LY++I  + + 
Sbjct: 16  NITYLSGSDEAGRGCLAGSLVVASVILKLDYFNPLIKDSKKLNPKTRQVLYDEIIKNCLD 75

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             I   S + +D+ N  +A+L      + NL++ P  ALIDG    E    +   +IKGD
Sbjct: 76  YQIIIISSKQVDEFNPLQASLLGFKTTINNLKITPDLALIDGNQNIELTNIKTLPIIKGD 135

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
             S SIA +SI+AKVTRD+++    + YP+Y F SH GY T KH   I++ G   IHR +
Sbjct: 136 DKSFSIACSSILAKVTRDKILDEYDQIYPNYDFKSHKGYCTKKHLLAIQKYGILDIHRKS 195

Query: 201 FRPLRNLS 208
           ++P++ +S
Sbjct: 196 YKPIKKIS 203


>gi|325971128|ref|YP_004247319.1| ribonuclease H [Spirochaeta sp. Buddy]
 gi|324026366|gb|ADY13125.1| Ribonuclease H [Spirochaeta sp. Buddy]
          Length = 209

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/179 (44%), Positives = 107/179 (59%), Gaps = 4/179 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           + G+DE GRG LAGPVV AA+IL P+     +NDSKK+S K+R E    I   A+  ++ 
Sbjct: 16  LCGLDEAGRGPLAGPVVAAAVILGPDFPTEILNDSKKLSEKQRLEAEIVIKQKALYWAVG 75

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
            A+ Q ID+ NI +A+L A+  A E +  Q+    AL+DG   P +L C   A++ GD++
Sbjct: 76  LATAQEIDRINILQASLLAMKRAYEKISSQIHVDVALVDGNQRP-NLDCITQAIVGGDAL 134

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
              I AASI+AK  RDR M + H K+P Y F  H GYPT +H+      G S IHR TF
Sbjct: 135 IPQIMAASILAKNQRDRYMVLCHTKWPFYNFAKHKGYPTEEHRSACLLYGLSPIHRRTF 193


>gi|163814002|ref|ZP_02205395.1| hypothetical protein COPEUT_00154 [Coprococcus eutactus ATCC 27759]
 gi|158450696|gb|EDP27691.1| hypothetical protein COPEUT_00154 [Coprococcus eutactus ATCC 27759]
          Length = 255

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/178 (48%), Positives = 113/178 (63%), Gaps = 4/178 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG LAGPVV AA+IL        +NDSK+IS +KRE LY++I   A+ + + 
Sbjct: 75  ICGIDEVGRGPLAGPVVAAAVILPKECDILYLNDSKQISAQKRELLYDEIMEKAVAVGVG 134

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            A+   ID  NI  A  +A+  A+  L V P+  L D  +IP  D+P     +IKGD++S
Sbjct: 135 MANQDVIDDINILNADYEAMKQAISKLSVRPQLLLNDAVNIPGVDIP--QVGIIKGDTLS 192

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            SIAAASIIAKVTRDRLM      YP YGF  ++GY TA+H + ++  GP  IHR +F
Sbjct: 193 ASIAAASIIAKVTRDRLMVEYDSIYPGYGFARNMGYGTAEHIKALETIGPCAIHRRSF 250


>gi|288800584|ref|ZP_06406042.1| ribonuclease HII [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332797|gb|EFC71277.1| ribonuclease HII [Prevotella sp. oral taxon 299 str. F0039]
          Length = 214

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/181 (43%), Positives = 111/181 (61%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  N     +NDSK+++ K+R  L + I   AI  ++  
Sbjct: 26  AGCDEAGRGCLAGSVYAAAVILPQNYSHPYLNDSKQLTEKRRMILRKDIEKDAIAWAVGV 85

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIP-EDLPCQAFAVIKGDSIS 143
            S + ID+ NI KA+  A++ A++ L+V P + +IDG R  P ++LP     ++KGDS  
Sbjct: 86  VSPEEIDEINILKASFLAMHRAIDQLKVRPEALIIDGNRFTPYQNLPYTP--IVKGDSKY 143

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAASI+AK  RD  M   H +YP Y +  + GYPT  H++ IK+ G +  HR++F  
Sbjct: 144 LSIAAASILAKTYRDEYMEELHSQYPQYEWSKNKGYPTVAHREAIKKYGTTPFHRMSFNL 203

Query: 204 L 204
           L
Sbjct: 204 L 204


>gi|189464553|ref|ZP_03013338.1| hypothetical protein BACINT_00896 [Bacteroides intestinalis DSM
           17393]
 gi|189438343|gb|EDV07328.1| hypothetical protein BACINT_00896 [Bacteroides intestinalis DSM
           17393]
          Length = 201

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/181 (43%), Positives = 108/181 (59%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++  +R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEHQRYALREVIEKEALAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143
            S + IDK NI  A+  A++ AV+ L++ P+  LIDG      +DLP     V+KGD   
Sbjct: 73  VSPEEIDKINILNASFLAMHRAVDQLKMRPQHLLIDGNRFKKYQDLPHTT--VVKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAASI+AK  RD  M   H++YP Y ++ + GYPT KH+  I E+G +  HR+TF  
Sbjct: 131 LSIAAASILAKTYRDDYMNRLHEEYPYYDWNHNKGYPTKKHRATIAERGTTPYHRMTFNL 190

Query: 204 L 204
           L
Sbjct: 191 L 191


>gi|111114868|ref|YP_709486.1| ribonuclease H [Borrelia afzelii PKo]
 gi|122956434|sp|Q0SPB8|RNH2_BORAP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|110890142|gb|ABH01310.1| ribonuclease H [Borrelia afzelii PKo]
          Length = 181

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/179 (42%), Positives = 107/179 (59%), Gaps = 3/179 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
           + GIDEVGRG + GP++ AA++    PN I   ++DSKK++ +KRE L   I  ++  + 
Sbjct: 2   ICGIDEVGRGCIFGPILSAAVVFKKKPNFIK-ELDDSKKLTKEKREYLSSLILENSYYAF 60

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
              S+  I+K NIH A+L A+  A ENL++      IDG+ +P+       A+IKGDSI 
Sbjct: 61  GEISNITIEKINIHNASLLAMQTAYENLKLNCNLVFIDGKFVPKISAKNVKAIIKGDSII 120

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             I AASIIAKV RD+LM    K YP Y    + GYPT +H+  IK+ G   +HR  F+
Sbjct: 121 DEIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFK 179


>gi|194365030|ref|YP_002027640.1| Ribonuclease H [Stenotrophomonas maltophilia R551-3]
 gi|194347834|gb|ACF50957.1| Ribonuclease H [Stenotrophomonas maltophilia R551-3]
          Length = 224

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 118/197 (59%), Gaps = 4/197 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREE 70
           F+  A++  + +  VAG+DE GRG LAGPV VAA++ DP      G++DSK+++  +RE+
Sbjct: 14  FDGNAVIEPERL--VAGVDEAGRGPLAGPVAVAAVVFDPARPRINGLDDSKQLTAARREQ 71

Query: 71  LYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L+++I   A+   +       ID+ NI++ATL  +   V  +  +   A IDG  +P+ L
Sbjct: 72  LHDRIIERALAWHVVLVDVDTIDRLNIYQATLQGMRDVVAAVAHVAGFARIDGNVVPKGL 131

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              A A++ GD I  +I AASI+AKV+RDR M   H ++P YGF+ H GY T  H   ++
Sbjct: 132 VLPAQALVGGDGIDRAIMAASILAKVSRDRYMLDVHSRHPQYGFEQHKGYGTPAHLAALR 191

Query: 190 EKGPSCIHRLTFRPLRN 206
           E GP   HR +F P+R 
Sbjct: 192 EHGPCVEHRRSFAPVRE 208


>gi|239617249|ref|YP_002940571.1| Ribonuclease H [Kosmotoga olearia TBF 19.5.1]
 gi|239506080|gb|ACR79567.1| Ribonuclease H [Kosmotoga olearia TBF 19.5.1]
          Length = 227

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/207 (42%), Positives = 123/207 (59%), Gaps = 7/207 (3%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           M C +  E   F+   M  EK    +AG+DE GRG LAGPVV AA+IL       G+ DS
Sbjct: 1   MRCENTEELLDFD--RMYIEK-FGVIAGLDEAGRGPLAGPVVAAAVILGEK--IEGLFDS 55

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K ++ K REEL++KI   A + I  +S   ID  NI +AT  A+  A++ L + P   +I
Sbjct: 56  KALTEKVREELFDKIIKKAKVGIGLSSPDEIDTFNIFEATKLAMNRAIKKLPIQPDYVII 115

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG+ +   L  +   ++ GD  S SIAAASI+AKV RDRLM+     YP+Y +D + GY 
Sbjct: 116 DGKHLK--LNNRGECIVSGDQKSASIAAASIVAKVFRDRLMKALAVLYPEYSWDKNKGYG 173

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           TA+H + +K  GP+  HRLTF P++ L
Sbjct: 174 TAEHLKALKIYGPTLWHRLTFSPVKAL 200


>gi|78185903|ref|YP_373946.1| ribonuclease H [Chlorobium luteolum DSM 273]
 gi|97189134|sp|Q3B6X8|RNH2_PELLD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|78165805|gb|ABB22903.1| RNase HII [Chlorobium luteolum DSM 273]
          Length = 208

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/201 (41%), Positives = 116/201 (57%), Gaps = 11/201 (5%)

Query: 18  VREKNMWP----VAGIDEVGRGALAGPVVVAAI----ILDPN-NIPFGINDSKKISHKKR 68
           VRE  +W     V GIDE GRG LAGPVV AA+       P+  I   +NDSKK++   R
Sbjct: 7   VREYLLWNDFLRVCGIDEAGRGPLAGPVVAAAVVFPRWFSPDEGILRRLNDSKKLTPSLR 66

Query: 69  EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
            EL   I   A   ++ +  H+ ID+ NI +AT+ A+  A E+L   P   LIDG     
Sbjct: 67  RELAPAIREEAECWAVEAVDHETIDRINILRATMLAMNRAAESLPRQPDLLLIDGNRFTP 126

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           ++P     ++ GD++  SIAAAS++AK  RDR+M    ++YP+YGF+ + GY T +H + 
Sbjct: 127 NIPVPYQTIVGGDALVFSIAAASVLAKTERDRMMEEYAERYPEYGFERNAGYGTREHVEA 186

Query: 188 IKEKGPSCIHRLTFRPLRNLS 208
           I+  G S IHR +FR LR L 
Sbjct: 187 IRRHGRSPIHRTSFR-LRQLG 206


>gi|294085233|ref|YP_003551993.1| Ribonuclease H [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664808|gb|ADE39909.1| Ribonuclease H [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 230

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/198 (41%), Positives = 116/198 (58%), Gaps = 21/198 (10%)

Query: 28  GIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA-IISI 83
           GIDE GRG  AGPV VAA+ LDP   +++P G++DSKK+   KR  LY+ +T++  I S+
Sbjct: 26  GIDEAGRGPWAGPVTVAAVWLDPKCYDDLPAGLDDSKKLKADKRAALYDALTTNTHIYSV 85

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENL-----QVIPRSAL---IDGRSIPEDLPC---- 131
            S     ID  NI + TL A++   E+L     Q   +SAL   +DG  +P  +P     
Sbjct: 86  ISVPPAIIDAGNILQVTLQAMHDCAEDLAGQLAQAGYKSALHMLVDGSIMPP-IPAPPVD 144

Query: 132 ----QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
                  AVI GD +SLSIAAASIIAK TRD +M      YP YG+ +++GY T  HQ+ 
Sbjct: 145 GGLFTGEAVIGGDGLSLSIAAASIIAKHTRDGIMTELDAAYPGYGWATNMGYGTKAHQEG 204

Query: 188 IKEKGPSCIHRLTFRPLR 205
           +   G +  HR +++P++
Sbjct: 205 LATLGVTPHHRKSYKPVK 222


>gi|169338113|ref|ZP_02622674.2| ribonuclease HII [Clostridium botulinum C str. Eklund]
 gi|169294134|gb|EDS76267.1| ribonuclease HII [Clostridium botulinum C str. Eklund]
          Length = 272

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/202 (41%), Positives = 116/202 (57%), Gaps = 18/202 (8%)

Query: 17  MVREKNMWP-----------VAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDS 60
           ++R +NM+            +AG DEVGRG LAGP+V A+++LD      +N+   INDS
Sbjct: 64  IIRVRNMYEFDKKYINGGTYLAGADEVGRGPLAGPIVAASVVLDLDTINDDNLILRINDS 123

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           KKIS + REEL + I   A+  SI   S++ IDK  I     + +  +V  L++ P   L
Sbjct: 124 KKISFEVREELSKIIRKRAVSYSIQEISNEEIDKKGIAWCNNEVLKRSVCELKISPDLVL 183

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
            DG  I        F V+KGD+ S SIA ASIIAKV RD LM    K YP+Y F+ ++GY
Sbjct: 184 SDGYKIKNCTISNEF-VVKGDAKSASIACASIIAKVYRDNLMIEYSKIYPEYMFNKNMGY 242

Query: 180 PTAKHQQVIKEKGPSCIHRLTF 201
            T +H + IK+ G + IHR +F
Sbjct: 243 GTKEHIEAIKKFGCTPIHRKSF 264


>gi|150003938|ref|YP_001298682.1| ribonuclease HII [Bacteroides vulgatus ATCC 8482]
 gi|254880820|ref|ZP_05253530.1| ribonuclease HII [Bacteroides sp. 4_3_47FAA]
 gi|294775094|ref|ZP_06740623.1| ribonuclease HII [Bacteroides vulgatus PC510]
 gi|319639832|ref|ZP_07994561.1| ribonuclease HII [Bacteroides sp. 3_1_40A]
 gi|166225169|sp|A6L046|RNH2_BACV8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|149932362|gb|ABR39060.1| ribonuclease HII [Bacteroides vulgatus ATCC 8482]
 gi|254833613|gb|EET13922.1| ribonuclease HII [Bacteroides sp. 4_3_47FAA]
 gi|294451138|gb|EFG19609.1| ribonuclease HII [Bacteroides vulgatus PC510]
 gi|317388496|gb|EFV69346.1| ribonuclease HII [Bacteroides sp. 3_1_40A]
          Length = 201

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/181 (42%), Positives = 109/181 (60%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++  +R  L E +   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPVDFKNELLNDSKQLTEHQRYALREIVEREALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143
            + + ID+ NI  A+  A++ AV+ L++ P+  LIDG      +DLP     V+KGD   
Sbjct: 73  VTPEEIDEINILNASFLAMHRAVDQLKIRPQHLLIDGNRFKKYQDLPHTT--VVKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAASI+AK  RD  M   HK+YP Y ++S+ GYPT KH+  I+E G +  HR+TF  
Sbjct: 131 LSIAAASILAKTYRDDYMNELHKEYPFYDWNSNKGYPTKKHRAAIREHGTTPYHRMTFNL 190

Query: 204 L 204
           L
Sbjct: 191 L 191


>gi|265754659|ref|ZP_06089711.1| ribonuclease HII [Bacteroides sp. 3_1_33FAA]
 gi|263234773|gb|EEZ20341.1| ribonuclease HII [Bacteroides sp. 3_1_33FAA]
          Length = 201

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/181 (42%), Positives = 109/181 (60%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++  +R  L E +   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPVDFKNELLNDSKQLTEHQRYALREIVEKEALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143
            + + ID+ NI  A+  A++ AV+ L++ P+  LIDG      +DLP     V+KGD   
Sbjct: 73  VTPEEIDEINILNASFLAMHRAVDQLKIRPQHLLIDGNRFKKYQDLPHTT--VVKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAASI+AK  RD  M   HK+YP Y ++S+ GYPT KH+  I+E G +  HR+TF  
Sbjct: 131 LSIAAASILAKTYRDDYMNGLHKEYPFYDWNSNKGYPTKKHRAAIREHGTTPYHRMTFNL 190

Query: 204 L 204
           L
Sbjct: 191 L 191


>gi|260172441|ref|ZP_05758853.1| ribonuclease HII [Bacteroides sp. D2]
 gi|315920736|ref|ZP_07916976.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694611|gb|EFS31446.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 200

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/179 (42%), Positives = 105/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++ K+R  L E I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEAIAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + ID+ NI +A+  A++ AV+ L   P+  LIDG    +        V+KGD   LS
Sbjct: 73  VSPEEIDEINILRASFLAMHRAVDQLSTRPQHLLIDGNRFTKYPGVPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H+++P Y +D + GYPT KH+  I E+G +  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTFNLL 191


>gi|34497665|ref|NP_901880.1| ribonuclease HII [Chromobacterium violaceum ATCC 12472]
 gi|39932273|sp|Q7NPS3|RNH2_CHRVO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|34331005|gb|AAQ64053.1| ribonuclease HII [Chromobacterium violaceum ATCC 12472]
          Length = 198

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/181 (45%), Positives = 109/181 (60%), Gaps = 1/181 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DE GRG LAG V  AA+ILDP     G+ DSK +S  +R+EL   I   A+   ++
Sbjct: 7   VAGVDEAGRGPLAGAVFAAAVILDPAKPIAGLADSKVLSEAQRDELAVLIKRDALAWCVA 66

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS + IDK NI  AT+ A+  AVE L V P  A IDG  +P+ LP    A++KGD+   
Sbjct: 67  SASVEEIDKLNILHATMLAMTRAVEGLPVRPDLAQIDGNRVPKHLPVPGEAIVKGDAKVA 126

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AK  RD  +      +P YGF  H GYPTA+H   I+  G    HR TF P+
Sbjct: 127 AISAASILAKTARDAELVALDALHPQYGFARHKGYPTAEHLAAIEAHGVLPAHRKTFGPV 186

Query: 205 R 205
           +
Sbjct: 187 K 187


>gi|160883918|ref|ZP_02064921.1| hypothetical protein BACOVA_01892 [Bacteroides ovatus ATCC 8483]
 gi|237720405|ref|ZP_04550886.1| ribonuclease HII [Bacteroides sp. 2_2_4]
 gi|156110648|gb|EDO12393.1| hypothetical protein BACOVA_01892 [Bacteroides ovatus ATCC 8483]
 gi|229450156|gb|EEO55947.1| ribonuclease HII [Bacteroides sp. 2_2_4]
          Length = 200

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/179 (42%), Positives = 105/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++ K+R  L E I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEAIAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + ID+ NI +A+  A++ AV+ L   P+  LIDG    +        V+KGD   LS
Sbjct: 73  VSPEEIDEINILRASFLAMHRAVDQLTTRPQHLLIDGNRFTKYPGVPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H+++P Y +D + GYPT KH+  I E+G +  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTFNLL 191


>gi|257066780|ref|YP_003153036.1| Ribonuclease H [Anaerococcus prevotii DSM 20548]
 gi|256798660|gb|ACV29315.1| Ribonuclease H [Anaerococcus prevotii DSM 20548]
          Length = 209

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/177 (42%), Positives = 106/177 (59%), Gaps = 3/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AGIDEVGRG LAGPVV  A+I+  ++   G+ DSKK++ KK   L EKI   AI  +  
Sbjct: 21  IAGIDEVGRGPLAGPVVTCAVIMKRDSNIGGVTDSKKLTRKKMLSLKEKILDDAIDFAYG 80

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A+   ID+ NI  AT  A+  A+  L++ P   LID   I  D+P     ++KGD    
Sbjct: 81  YANPSLIDELNIKNATHKAMEDALNKLKIRPEIVLIDAERINTDIP--QMNIVKGDLNEY 138

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            I+ ASI+AKV RD +M    K YP Y F++++GY T KH + +++ G + IHR TF
Sbjct: 139 VISCASILAKVRRDDIMINFSKIYPGYSFETNMGYGTKKHYEGLEKYGETPIHRQTF 195


>gi|29348821|ref|NP_812324.1| ribonuclease HII [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568833|ref|ZP_04846243.1| ribonuclease HII [Bacteroides sp. 1_1_6]
 gi|298387905|ref|ZP_06997454.1| ribonuclease HII [Bacteroides sp. 1_1_14]
 gi|39932389|sp|Q8A293|RNH2_BACTN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|29340727|gb|AAO78518.1| ribonuclease HII [Bacteroides thetaiotaomicron VPI-5482]
 gi|251840852|gb|EES68933.1| ribonuclease HII [Bacteroides sp. 1_1_6]
 gi|298259312|gb|EFI02187.1| ribonuclease HII [Bacteroides sp. 1_1_14]
          Length = 200

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/181 (43%), Positives = 108/181 (59%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++ K+R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143
            S + ID+ NI +A+  A++ AV+ L V P+  LIDG    +  D+P     VIKGD   
Sbjct: 73  VSPEEIDEINILRASFLAMHRAVDQLSVRPQHLLIDGNRFNKYPDIPHTT--VIKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAASI+AK  RD  M   H++YP Y ++ + GYPT KH+  I E G +  HR+TF  
Sbjct: 131 LSIAAASILAKTYRDDYMNRLHEEYPFYDWNKNKGYPTKKHRAAIAEHGTTPYHRMTFNL 190

Query: 204 L 204
           L
Sbjct: 191 L 191


>gi|116750425|ref|YP_847112.1| ribonuclease HII [Syntrophobacter fumaroxidans MPOB]
 gi|116750467|ref|YP_847154.1| ribonuclease HII [Syntrophobacter fumaroxidans MPOB]
 gi|189043668|sp|A0LMM5|RNH2_SYNFM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|116699489|gb|ABK18677.1| Ribonuclease H [Syntrophobacter fumaroxidans MPOB]
 gi|116699531|gb|ABK18719.1| RNase HII [Syntrophobacter fumaroxidans MPOB]
          Length = 233

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/198 (46%), Positives = 116/198 (58%), Gaps = 8/198 (4%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           HFE +A    +    VAGIDEVGRG LAGPVV AA+++       G+ DSKK+S  +RE 
Sbjct: 15  HFEKQAY--RQGFQLVAGIDEVGRGPLAGPVVAAAVVVPAGVRLPGVADSKKLSAGQRES 72

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
             E I S    + I       ID+ NI +AT  A+  AV  L+  P   LIDG   P +L
Sbjct: 73  CCEDILSCGCDVGIGRVEPSEIDRVNILQATFQAMIAAVAGLKTPPHCLLIDG---PYEL 129

Query: 130 PC--QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           P       + +GD+ SLSIAAASI+AKV RDRLM   H KYP YGFD + GY TA+H   
Sbjct: 130 PLFIAQKGIPQGDAKSLSIAAASIVAKVHRDRLMCEYHLKYPVYGFDRNKGYGTARHLDA 189

Query: 188 IKEKGPSCIHRLTFRPLR 205
           ++  GP  IHRL+F  +R
Sbjct: 190 LRRYGPCPIHRLSFGGVR 207


>gi|295098996|emb|CBK88085.1| RNase HII [Eubacterium cylindroides T2-87]
          Length = 202

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/183 (42%), Positives = 106/183 (57%), Gaps = 4/183 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           V GIDE GRG +AGP+VVA +  +       I+DSKK++ KKRE L+  IT+ A+   I 
Sbjct: 17  VLGIDEAGRGPIAGPLVVAGVCFEKGFTNEMIDDSKKLTEKKREALFSLITNEALWYQIL 76

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
               + IDK NI++ T +A+     N  V     L D   +P  L  +  +VIKGD  SL
Sbjct: 77  VIEEKIIDKKNIYRTTQEAMLEIAHNAPV--DIVLSDAMPLPS-LDKEWESVIKGDQKSL 133

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASI+AKVTRDR M+   + YP YGF  H GYPT  H + +   G    HR ++ P+
Sbjct: 134 SIAAASILAKVTRDRYMKKLDELYPMYGFSKHKGYPTKAHIEALNIYGVLDCHRRSYGPV 193

Query: 205 RNL 207
           + +
Sbjct: 194 QKM 196


>gi|326803548|ref|YP_004321366.1| ribonuclease HII [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651055|gb|AEA01238.1| ribonuclease HII [Aerococcus urinae ACS-120-V-Col10a]
          Length = 258

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/195 (41%), Positives = 122/195 (62%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           ++EA +  K    +AG+DEVGRG LAGPVV AA+IL P    F + DSK++S  +R+ L 
Sbjct: 64  QIEADLHAKGFQYIAGVDEVGRGPLAGPVVTAAVILKPKRPLFDLRDSKQLSQVQRQNLI 123

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I  +++ I+I    ++ ID++NI  AT  ++ ++++ L       LID   +  ++P 
Sbjct: 124 PLIKENSVAIAIDVQDNEAIDRYNILNATKRSMMNSIKKLSPQAEYVLIDAVDLSLNIPH 183

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
            +  +IKGD    +IAAASIIAK  RD++MR   K+YP YGFD +VGY T +H + I+  
Sbjct: 184 SS--LIKGDDRVSAIAAASIIAKEYRDQIMRDYAKRYPAYGFDRNVGYGTKEHLKAIETY 241

Query: 192 GPSCIHRLTFRPLRN 206
           GP  IHR +F P++N
Sbjct: 242 GPCPIHRKSFAPIKN 256


>gi|212692764|ref|ZP_03300892.1| hypothetical protein BACDOR_02262 [Bacteroides dorei DSM 17855]
 gi|237724942|ref|ZP_04555423.1| ribonuclease HII [Bacteroides sp. D4]
 gi|212664700|gb|EEB25272.1| hypothetical protein BACDOR_02262 [Bacteroides dorei DSM 17855]
 gi|229436680|gb|EEO46757.1| ribonuclease HII [Bacteroides dorei 5_1_36/D4]
          Length = 201

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/181 (42%), Positives = 109/181 (60%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++  +R  L E +   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPVDFKNELLNDSKQLTEHQRYALREIVEREALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143
            + + ID+ NI  A+  A++ AV+ L++ P+  LIDG      +DLP     V+KGD   
Sbjct: 73  VTPEEIDEINILNASFLAMHRAVDQLKIRPQHLLIDGNRFKKYQDLPHTT--VVKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAASI+AK  RD  M   HK+YP Y ++S+ GYPT KH+  I+E G +  HR+TF  
Sbjct: 131 LSIAAASILAKTYRDDYMNGLHKEYPFYDWNSNKGYPTKKHRAAIREYGTTPYHRMTFNL 190

Query: 204 L 204
           L
Sbjct: 191 L 191


>gi|160892722|ref|ZP_02073512.1| hypothetical protein CLOL250_00252 [Clostridium sp. L2-50]
 gi|156865763|gb|EDO59194.1| hypothetical protein CLOL250_00252 [Clostridium sp. L2-50]
          Length = 257

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/178 (50%), Positives = 114/178 (64%), Gaps = 4/178 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG LAGPVV AA+IL  N     +NDSK++S KKREELY++IT  A+   I 
Sbjct: 75  ICGIDEVGRGPLAGPVVAAAVILPENCDILYLNDSKQLSEKKREELYDEITEKAVAYGIG 134

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
            A  + ID+ NI  A  +A+  A+  L V P   L D   IPE ++P    ++IKGD+ S
Sbjct: 135 MADEKLIDQINILNADYEAMRIAIHKLAVKPDLLLNDAVRIPEVEIP--QVSIIKGDAKS 192

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            SIAAASIIAKVTRDRLM    + YP YGF  + GY + +H + +K  GP  IHR +F
Sbjct: 193 ASIAAASIIAKVTRDRLMVAYDEIYPGYGFAKNKGYGSKEHIEALKTIGPCEIHRRSF 250


>gi|281422598|ref|ZP_06253597.1| ribonuclease HII [Prevotella copri DSM 18205]
 gi|281403268|gb|EFB33948.1| ribonuclease HII [Prevotella copri DSM 18205]
          Length = 215

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/181 (40%), Positives = 109/181 (60%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL P      +NDSKK++ KKR+ L E+I   A+  ++  
Sbjct: 26  AGCDEAGRGCLAGSVYAAAVILPPGYQNAELNDSKKLTDKKRKALREQIERDAVAWAVGI 85

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143
            + + IDK NI  A+  A++ A++ L+V P + ++DG      +DLP     ++KGD   
Sbjct: 86  VTPEEIDKINILNASFLAMHRALDQLKVRPEAVIVDGNRFKPYKDLPYTT--IVKGDGKY 143

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           ++IAAASI+AK  RD  M    ++YP Y +  + GYPT KH+  I+E G +  HR+++  
Sbjct: 144 MAIAAASILAKTYRDDYMDALAEEYPQYDWKGNKGYPTKKHRAAIREFGVTPYHRMSYNL 203

Query: 204 L 204
           L
Sbjct: 204 L 204


>gi|326575992|gb|EGE25915.1| ribonuclease HII [Moraxella catarrhalis CO72]
          Length = 248

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/208 (41%), Positives = 114/208 (54%), Gaps = 25/208 (12%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIIL-----------DPNNIPFGI-NDSKKISHKKREELY 72
           P+ GIDEVGRG L G + V A+IL           D  N    + NDSKK+S K+RE+L+
Sbjct: 28  PIVGIDEVGRGTLFGNMTVGAVILPNELSGRFDEIDLTNTKISLLNDSKKLSEKRREQLF 87

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVE------NLQVIPRSALIDGRSI 125
           + IT  A+  +I       ID+ NI++AT+  +  A+E      NL     + LIDG  +
Sbjct: 88  DIITDLALDYAIVDVPSTIIDQINIYQATMLGMKIAIETIIIKNNLNEKNTTILIDGNQL 147

Query: 126 PE------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           P       +   Q +A+IKGD+   SIA ASI+AKV RDRLM    K YP Y  D H GY
Sbjct: 148 PSMDGSLGEHFHQIYAMIKGDATHSSIACASILAKVHRDRLMIQHAKSYPKYLLDKHKGY 207

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
            TAKH+  I E G    HR +F P+R L
Sbjct: 208 LTAKHKAAILEYGILPEHRRSFSPIREL 235


>gi|320159510|ref|YP_004172734.1| ribonuclease HII [Anaerolinea thermophila UNI-1]
 gi|319993363|dbj|BAJ62134.1| ribonuclease HII [Anaerolinea thermophila UNI-1]
          Length = 224

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/209 (40%), Positives = 123/209 (58%), Gaps = 7/209 (3%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDS 60
           +P  P    E  + +  +  VAG+DE GRGA AGPV  AA+IL   +        G+ DS
Sbjct: 9   LPHDPTLAFEQSLWQAGVLHVAGVDEAGRGAWAGPVAAAAVILPSGDSALLERLHGVRDS 68

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           K+++ K RE   E I  +A+   +  AS + I+   I  AT  A+  A++   + P   L
Sbjct: 69  KQMTAKAREGFAEVIRQTALAWGVGFASVEEIETQGIVPATRLAMMRALQACALSPTHLL 128

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           ID   +PE +P    ++IKGD+ SLSIAAAS++AK  RD LMR   ++YP YGF+ H GY
Sbjct: 129 IDALRLPE-IPLPQTSLIKGDARSLSIAAASVLAKTARDALMRDLARQYPQYGFELHKGY 187

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNLS 208
            TA+H+  +++ GP  +HR T+RP+ +LS
Sbjct: 188 GTARHRAALEQWGPCPLHRRTYRPVMHLS 216


>gi|282879385|ref|ZP_06288128.1| ribonuclease HII [Prevotella buccalis ATCC 35310]
 gi|281298498|gb|EFA90924.1| ribonuclease HII [Prevotella buccalis ATCC 35310]
          Length = 203

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/181 (41%), Positives = 110/181 (60%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL PN     +NDSK++S KKR+ L + I + A+  ++  
Sbjct: 16  AGCDEAGRGCLAGSVFAAAVILPPNYDNADLNDSKQLSRKKRDALRQAIINDAVAWAVGE 75

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIP-EDLPCQAFAVIKGDSIS 143
            + Q ID+ NI +A+  A++ A++ L   P++ ++DG R  P  DLP     +IKGD   
Sbjct: 76  VTPQEIDEINILRASFLAMHRALDQLTTRPQAIIVDGNRFTPYHDLPYTT--IIKGDGKY 133

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             IAAASI+AK  RD  M    ++YP Y + S++GYPT KH++ I+  G +  HR +F  
Sbjct: 134 QDIAAASILAKTFRDDYMDRLAQEYPQYDWQSNMGYPTRKHREAIRAYGITPYHRRSFNL 193

Query: 204 L 204
           L
Sbjct: 194 L 194


>gi|70726670|ref|YP_253584.1| ribonuclease HII [Staphylococcus haemolyticus JCSC1435]
 gi|97189319|sp|Q4L5U7|RNH2_STAHJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|68447394|dbj|BAE04978.1| ribonuclease HII [Staphylococcus haemolyticus JCSC1435]
          Length = 255

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/184 (40%), Positives = 113/184 (61%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG LAGPVV  A+IL+  +   G++DSKK++  KR+ L +K+    +  +  
Sbjct: 74  ICGIDEVGRGPLAGPVVACAVILNEGHRYLGLDDSKKVTASKRQILNKKLKDGVLEYAYG 133

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID+ NI+ AT  A+  A+  L   P   LID  S+   +P    ++IKGD+ S+
Sbjct: 134 LASPEEIDELNIYNATQVAMNRALSQLVNRPDHLLIDAMSLDTTIP--QTSIIKGDAKSV 191

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASI+AK  RD LM+    +YP Y F+ +VGY T  H   + + G +  HR +F P+
Sbjct: 192 SIAAASIMAKEYRDDLMKEIADEYPGYEFEKNVGYGTKAHLDGLNKLGITPYHRKSFEPI 251

Query: 205 RNLS 208
           ++++
Sbjct: 252 KSMT 255


>gi|167756891|ref|ZP_02429018.1| hypothetical protein CLORAM_02440 [Clostridium ramosum DSM 1402]
 gi|167703066|gb|EDS17645.1| hypothetical protein CLORAM_02440 [Clostridium ramosum DSM 1402]
          Length = 206

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/185 (40%), Positives = 114/185 (61%), Gaps = 8/185 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI---IS 82
           + G+DE GRG +AG +VVA ++         INDSK++S KKRE LY+ I  +A+   I 
Sbjct: 18  IIGLDEAGRGPMAGELVVAGVVFPKGFYDERINDSKQLSAKKREVLYDLIIENALYYDIE 77

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I S +   +D+ N+++A+   +   +E L+     AL D  ++P D P    ++IKGD+ 
Sbjct: 78  IISVAD--VDRLNVYQASKQGMEKCLELLKKEKMFALTD--AMPIDYP-DHLSIIKGDAK 132

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           S+SIA ASI+AKVTRDRLM     +YP+YGF+ H GY T  H++ + + G   IHR +F 
Sbjct: 133 SISIAGASILAKVTRDRLMEAYALEYPEYGFEKHKGYVTKAHKEALGKYGVCPIHRKSFG 192

Query: 203 PLRNL 207
           P++ +
Sbjct: 193 PVQKI 197


>gi|218295991|ref|ZP_03496771.1| Ribonuclease H [Thermus aquaticus Y51MC23]
 gi|218243729|gb|EED10257.1| Ribonuclease H [Thermus aquaticus Y51MC23]
          Length = 200

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/191 (41%), Positives = 109/191 (57%), Gaps = 9/191 (4%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           E   W     VAG+DE GRGA AGP+VV A+IL P   PF   DSK ++ K RE L E++
Sbjct: 5   EAGFWALGLRVAGVDEAGRGAWAGPIVVGAVILPPGRYPF--KDSKLLTPKAREALAEEV 62

Query: 76  TSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
              A+  ++  A  + +D+  +++ATL A   A+  L + P + + D   +P   P    
Sbjct: 63  RRVALAHALGLAEVEEVDRLGVYRATLLAAKRALSALALPPEALVTD--YLPLSTPLPLL 120

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
           A  + D  S S+AAASI+AKV RDRLM    + YP YGF  H GY T +HQ+ +   GPS
Sbjct: 121 APPRADRESPSVAAASILAKVHRDRLMAELDRLYPGYGFAQHKGYGTPEHQEALLALGPS 180

Query: 195 CIHRLTFRPLR 205
            +HR  F P+R
Sbjct: 181 PVHRRRFTPVR 191


>gi|224534867|ref|ZP_03675436.1| ribonuclease HII [Borrelia spielmanii A14S]
 gi|224513807|gb|EEF84132.1| ribonuclease HII [Borrelia spielmanii A14S]
          Length = 181

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/179 (41%), Positives = 108/179 (60%), Gaps = 3/179 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
           + GIDEVGRG + GP++ AA++    PN I   ++DSKK+  +KRE L   I  ++  + 
Sbjct: 2   ICGIDEVGRGCIFGPILSAAVVFKKKPNFIK-ELDDSKKLKKEKREYLSSLILENSYYAF 60

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +  S+  I+K NIH A+L A+  A ENL++      +DG+ +P+       A+IKGDSI 
Sbjct: 61  AEISNITIEKINIHNASLLAMQTAYENLKLNCSLVFVDGKFVPKITAKTVKAIIKGDSII 120

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             I AASIIAKV RD+LM    K YP Y    + GYPT +H+  IK+ G   +HR +F+
Sbjct: 121 DEIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKHGVLSLHRKSFK 179


>gi|170743460|ref|YP_001772115.1| ribonuclease H [Methylobacterium sp. 4-46]
 gi|168197734|gb|ACA19681.1| Ribonuclease H [Methylobacterium sp. 4-46]
          Length = 209

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/191 (41%), Positives = 113/191 (59%), Gaps = 6/191 (3%)

Query: 17  MVREKNMWP-VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREEL 71
           + RE   +P + G DEVGRGAL GPV+VAA+  DP  +P      ++DSK++    R  L
Sbjct: 6   LAREAARYPALIGCDEVGRGALCGPVIVAAVHFDPAALPPDLLEALDDSKRLDAATRARL 65

Query: 72  YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             ++ + A I+ + AS   ID+ N+  ATLDA+  AV  L +    A +DGR  P  L  
Sbjct: 66  AARLPALARIAYAGASRDLIDRINVRAATLDAMARAVLRLGLAGPVA-VDGRDRPPGLDG 124

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +  AVI G+ +   IAAASI+AKV RDRLM +  +++P Y +  + GY TA H+  +  +
Sbjct: 125 RVRAVIGGERLVPQIAAASILAKVLRDRLMAVLARRHPAYAWARNAGYGTAAHRAALLRE 184

Query: 192 GPSCIHRLTFR 202
           GPS  HR +FR
Sbjct: 185 GPSPHHRRSFR 195


>gi|74316817|ref|YP_314557.1| RNase HII [Thiobacillus denitrificans ATCC 25259]
 gi|97189444|sp|Q3SKM7|RNH2_THIDA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|74056312|gb|AAZ96752.1| ribonuclease H [Thiobacillus denitrificans ATCC 25259]
          Length = 204

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/183 (43%), Positives = 109/183 (59%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + G+DE GRG LAGPVV AA++LDP     G+ DSKK++   RE L ++I + A+   ++
Sbjct: 16  LCGVDEAGRGPLAGPVVAAAVMLDPKRPIKGLRDSKKLTPAARERLADEIRARALAWCVA 75

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID+ NI  AT+ A+  AV  +   P    +DG   PE    ++ AV++GD    
Sbjct: 76  EASVAEIDRLNILHATMLAMQRAVAGMSHAPDDVWVDGDRCPE-WTWRSQAVVQGDDKVA 134

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AK  RD LMR  H+ YP YGF  H+GY TA H   +K  G    HR +F P+
Sbjct: 135 AIAAASILAKTVRDELMRGLHEAYPLYGFAQHMGYATAAHLAALKANGACPHHRRSFAPV 194

Query: 205 RNL 207
           R L
Sbjct: 195 RLL 197


>gi|282896399|ref|ZP_06304420.1| Ribonuclease HII/HIII [Raphidiopsis brookii D9]
 gi|281198687|gb|EFA73567.1| Ribonuclease HII/HIII [Raphidiopsis brookii D9]
          Length = 210

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/209 (42%), Positives = 118/209 (56%), Gaps = 9/209 (4%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPF 55
           M   S+ E    EL     +K  W VAG+DEVGRGAL GPVV AA+IL PN+     +  
Sbjct: 1   MHKGSVKESNWQELSDHWHQKG-W-VAGVDEVGRGALFGPVVAAAVIL-PNSALSILVES 57

Query: 56  GINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVI 114
            I DSK++S   R  L ++I   A+   I  A+   ID+ NI +ATL A+  AV  L+  
Sbjct: 58  KIKDSKQLSVSHRRYLAQQIAQLAVEWKIGYATTAEIDRLNILQATLLAMKRAVLKLKSQ 117

Query: 115 PRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174
           P   L+DG     DL  +  A+I+GD  SL+IAAASI+AKV RD L+    KKY  Y   
Sbjct: 118 PSLCLVDGNQFIRDLLIEQQAIIQGDRRSLNIAAASIMAKVWRDDLVVRLGKKYDMYDLH 177

Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            + GY + KH   +++ G S +HR +F P
Sbjct: 178 QNKGYGSQKHLLALQKHGASPLHRQSFSP 206


>gi|167764134|ref|ZP_02436261.1| hypothetical protein BACSTE_02517 [Bacteroides stercoris ATCC
           43183]
 gi|167698250|gb|EDS14829.1| hypothetical protein BACSTE_02517 [Bacteroides stercoris ATCC
           43183]
          Length = 201

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/179 (42%), Positives = 105/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++ K+R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEALAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S   IDK NI  A+  A++ AV+ LQ+ P+  LIDG    +        V+KGD   LS
Sbjct: 73  VSPGEIDKINILNASFLAMHRAVDRLQLRPQHLLIDGNRFKKYRDIPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H+++P Y ++ + GYPT KH+  I E+G +  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWNHNKGYPTKKHRAAIAERGTTPYHRMTFNLL 191


>gi|332828692|gb|EGK01384.1| ribonuclease HII [Dysgonomonas gadei ATCC BAA-286]
          Length = 199

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/178 (43%), Positives = 104/178 (58%), Gaps = 5/178 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL  +     +NDSK+++ K+R  L   I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGPVFAAAVILPKDFECEKLNDSKQLTEKERYNLRPLIEERALAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143
             H+ IDK NI  A+  A+  AV +L++ P+  LIDG      ED+P     V+KGD   
Sbjct: 73  VDHKEIDKINILNASFLAMQRAVASLKIRPQHLLIDGNRFKKYEDIPHTC--VVKGDGKL 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           L IAAAS++AK  RD  M   H +YP Y +D + GYPT KH+  IK  G +  HRLTF
Sbjct: 131 LPIAAASVLAKTYRDDYMEKLHGEYPLYDWDHNKGYPTKKHRLAIKAYGVTPYHRLTF 188


>gi|148292195|dbj|BAF62910.1| putative ribonuclease H [uncultured bacterium]
          Length = 229

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/219 (36%), Positives = 119/219 (54%), Gaps = 19/219 (8%)

Query: 2   FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGIN 58
           F ++  + P + LE+         V G+DE GRG  AGPV  AA  + P   +++P  + 
Sbjct: 9   FNDTASDLPDYTLESAASGNGA--VIGVDEAGRGPWAGPVTAAAFWIYPAAKDSLPASLT 66

Query: 59  DSKKISHKKREELYEKIT---SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP 115
           DSKK+S  KR+++ + +    S  + ++  +S   ID   I  AT  A+  AV  L    
Sbjct: 67  DSKKLSASKRQQIEQALCAPHSQHLWAVKHSSVNQIDTCGILPATFAAMAEAVAELAKTL 126

Query: 116 RS--------ALIDGRSIPE-DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166
           +          L+DG  +P  D PCQA  V++GDS SLSIAAASI+AK +RD +M     
Sbjct: 127 QKRHNLPVAMVLVDGNLLPPLDFPCQA--VVRGDSRSLSIAAASILAKQSRDEVMTELAS 184

Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
            YPDYG+ ++ GY T  HQQ ++  G +  HR +F P++
Sbjct: 185 HYPDYGWQTNAGYGTKAHQQALQRCGITPHHRKSFAPIK 223


>gi|88801501|ref|ZP_01117029.1| ribonuclease HII [Polaribacter irgensii 23-P]
 gi|88782159|gb|EAR13336.1| ribonuclease HII [Polaribacter irgensii 23-P]
          Length = 196

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 111/182 (60%), Gaps = 7/182 (3%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           AG DE GRG L GPVV AA+IL  +   PF +NDSK +S KKRE +   I  +A+  S+S
Sbjct: 13  AGTDEAGRGCLCGPVVAAAVILSKDFTHPF-LNDSKLLSEKKREAVRPFIEENALAFSVS 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSI 142
               Q +D+ N+ +A+++ ++ A+  L++ P   ++DG    +  ++P Q   ++KGDS 
Sbjct: 72  FIWQQEVDEINVLQASIEGMHRAIAGLKITPEFIIVDGNKFRDYKEIPHQT--IVKGDSK 129

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            LSIAAAS++AK  RD  M   H ++P Y +  + GYPT +H+  I+  G +  HR TFR
Sbjct: 130 YLSIAAASVLAKTYRDDYMAKIHLEFPMYNWAKNKGYPTKEHRNAIRNFGATEYHRKTFR 189

Query: 203 PL 204
            L
Sbjct: 190 LL 191


>gi|303235632|ref|ZP_07322239.1| ribonuclease HII [Prevotella disiens FB035-09AN]
 gi|302484079|gb|EFL47067.1| ribonuclease HII [Prevotella disiens FB035-09AN]
          Length = 202

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/181 (41%), Positives = 110/181 (60%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL PN     +NDSK++S KKR +L   I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPPNYENELLNDSKQLSEKKRYQLRSIIEKDAIAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143
            + + ID+ NI  A++ A++ A++ L+  P + ++DG      +DLP     ++KGD   
Sbjct: 73  VTAEEIDEINILNASILAMHRALDGLKTRPEAVIVDGNRFKPYKDLPYST--IVKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAASI+AK  RD  M+   ++YP Y + S+ GYPT KH++ I++ G +  HR +F  
Sbjct: 131 LSIAAASILAKTYRDDYMKGLAEEYPQYDWKSNKGYPTKKHREAIRQHGITPYHRKSFTL 190

Query: 204 L 204
           L
Sbjct: 191 L 191


>gi|323341686|ref|ZP_08081919.1| ribonuclease HII [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464111|gb|EFY09304.1| ribonuclease HII [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 204

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/189 (39%), Positives = 115/189 (60%), Gaps = 10/189 (5%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           E N W     V GIDE GRG +AGP VV+ +I         INDSK++S K+R+EL   I
Sbjct: 9   EVNYWEQGKLVVGIDEAGRGPMAGPCVVSGVIFPKGYYDARINDSKQLSEKQRDELVSNI 68

Query: 76  TSSAIISISSA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-EDLPCQA 133
            S+A+ + +       ID+ NI++AT     +A++ + +  ++ ++   ++P +D+    
Sbjct: 69  ESNALWTFTEIIPVDIIDRDNIYRAT----QNAMKKIAIESKADIVLTDAMPLDDIAIPV 124

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            A++KGD+ SLSIAAASI+AK  RD LM++   ++P+YGF  H GY T +H++ I + G 
Sbjct: 125 EAIVKGDARSLSIAAASILAKTVRDGLMKVYDLEFPEYGFAKHKGYGTKQHKEAILKFGR 184

Query: 194 SCIHRLTFR 202
             IHR +FR
Sbjct: 185 CPIHRKSFR 193


>gi|53803396|ref|YP_114857.1| ribonuclease HII [Methylococcus capsulatus str. Bath]
 gi|81681269|sp|Q604U3|RNH2_METCA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|53757157|gb|AAU91448.1| ribonuclease HII [Methylococcus capsulatus str. Bath]
          Length = 193

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/181 (41%), Positives = 102/181 (56%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAGIDEVGRG +AGPV+ AA+I  P     G+ DSK++   +R  L  +I S ++  ++ 
Sbjct: 5   VAGIDEVGRGCIAGPVIAAAVIFAPGQDTHGLADSKRLRPDRRLVLAGRICSESLAWAVG 64

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI +AT  A+  AV  L V+P    +DG   P  L C   A++ GD+   
Sbjct: 65  RAEVSEIDQLNILRATHLAMCRAVAALPVLPDWVRVDGNRYPP-LDCPGEAIVGGDASVA 123

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            IAAASI+AKV RDR M +  +  P Y    H GYPT  H   +  +G S  HR +F P+
Sbjct: 124 EIAAASILAKVFRDREMEVLDRLCPGYALGVHKGYPTRLHIDRLASRGASFFHRRSFAPV 183

Query: 205 R 205
           R
Sbjct: 184 R 184


>gi|299147105|ref|ZP_07040172.1| ribonuclease HII [Bacteroides sp. 3_1_23]
 gi|298514990|gb|EFI38872.1| ribonuclease HII [Bacteroides sp. 3_1_23]
          Length = 200

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/179 (42%), Positives = 105/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++ K+R  L E I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEAIAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + ID+ NI +A+  A++ AV+ L   P+  LIDG    +        V+KGD   LS
Sbjct: 73  VSPEEIDEINILRASFLAMHRAVDQLSTRPQHLLIDGNRFTKYPGVPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H+++P Y +D + GYPT KH+  I E+G +  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRASIAERGTTPYHRMTFNLL 191


>gi|296171466|ref|ZP_06852752.1| ribonuclease HII [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894152|gb|EFG73912.1| ribonuclease HII [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 242

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/202 (38%), Positives = 116/202 (57%), Gaps = 10/202 (4%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE+ +    + PVAG+DEVGRGA AGP+VVAA +L P  +     ++DSKK++   RE+L
Sbjct: 20  LESALYRSGLGPVAGVDEVGRGACAGPLVVAACVLGPGRLESLAALDDSKKLTEGAREKL 79

Query: 72  YEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           +  I   A    ++ I  A    +D+  +H A ++ +  AV  L + P   L DG  +P 
Sbjct: 80  FPLIRRYALAYHVVFIPPAE---VDRRGVHVANIEGMRRAVAGLSLRPGYVLSDGFRVP- 135

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            LP  +  VI GD+++  IAAAS++AKV+RDRLM      +P YGF  H GY T  H   
Sbjct: 136 GLPVPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMDADHPGYGFAEHKGYSTPAHSTA 195

Query: 188 IKEKGPSCIHRLTFRPLRNLSV 209
           + + GP   HR +F  +R +++
Sbjct: 196 LTQLGPCPEHRRSFINVRRVAL 217


>gi|219684853|ref|ZP_03539795.1| ribonuclease HII [Borrelia garinii PBr]
 gi|219685363|ref|ZP_03540182.1| ribonuclease HII [Borrelia garinii Far04]
 gi|219671798|gb|EED28853.1| ribonuclease HII [Borrelia garinii PBr]
 gi|219673136|gb|EED30156.1| ribonuclease HII [Borrelia garinii Far04]
          Length = 181

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/179 (42%), Positives = 107/179 (59%), Gaps = 3/179 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
           + GIDEVGRG + GPV+ AA++    PN I   ++DSKK+  +KRE L   I  ++  + 
Sbjct: 2   ICGIDEVGRGCIFGPVLSAAVVFKKKPNFIK-ELDDSKKLKKEKREYLSSLILENSYYAF 60

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +  S+  I+K NIH ATL A+  A ENL++      +DG+ +P+       A+IKGDSI 
Sbjct: 61  AEISNIIIEKINIHNATLLAMQTAYENLKLNCSLVFVDGKFVPKITAKTVKAIIKGDSII 120

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             I AASIIAKV RD+L+    K YP Y    + GYPT +H+  IK+ G   +HR  F+
Sbjct: 121 DEIKAASIIAKVKRDKLIDEYDKIYPLYLLRKNKGYPTKEHKNAIKKYGVLSLHRKNFK 179


>gi|237709459|ref|ZP_04539940.1| ribonuclease HII [Bacteroides sp. 9_1_42FAA]
 gi|229456515|gb|EEO62236.1| ribonuclease HII [Bacteroides sp. 9_1_42FAA]
          Length = 201

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/181 (42%), Positives = 109/181 (60%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++  +R  L E +   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPVDFKNELLNDSKQLTEHQRYVLREIVEREALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143
            + + ID+ NI  A+  A++ AV+ L++ P+  LIDG      +DLP     V+KGD   
Sbjct: 73  VTPEEIDEINILNASFLAMHRAVDQLKIRPQHLLIDGNRFKKYQDLPHTT--VVKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAASI+AK  RD  M   HK+YP Y ++S+ GYPT KH+  I+E G +  HR+TF  
Sbjct: 131 LSIAAASILAKTYRDDYMNGLHKEYPFYDWNSNKGYPTKKHRAAIREYGTTPYHRMTFNL 190

Query: 204 L 204
           L
Sbjct: 191 L 191


>gi|50365354|ref|YP_053779.1| ribonuclease HII, primer excision [Mesoplasma florum L1]
 gi|50363910|gb|AAT75895.1| Ribonuclease HII, primer excision [Mesoplasma florum L1]
          Length = 208

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/197 (41%), Positives = 118/197 (59%), Gaps = 5/197 (2%)

Query: 14  LEAMVREKNMWP-VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
            ++ +REK     ++G DE GRGA+AGPVVVA++IL  +     I DSKK+S K+RE L 
Sbjct: 9   FDSQIREKYKTDFISGSDEAGRGAMAGPVVVASVILPKDYKNCLIRDSKKLSKKQRESLC 68

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-EDLP 130
           E+I S AI  +I       +D  N  +A+   +  ++ NL+  P   LID  +I  ++  
Sbjct: 69  EEIKSVAISYAIEIIEADEVDILNPKQASRIGMTKSIMNLKPKPDLCLIDAENIIIQEYV 128

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
           C  F  IKGD +S SIAAASI+AK TRD +M    K YP+Y F+SH GY   +H +  K 
Sbjct: 129 CAPF--IKGDDLSQSIAAASILAKTTRDNIMLDYAKIYPEYNFESHKGYCVKEHVEKTKM 186

Query: 191 KGPSCIHRLTFRPLRNL 207
            G   IHR T++P++++
Sbjct: 187 LGVLPIHRKTYKPIKDI 203


>gi|271970454|ref|YP_003344650.1| ribonuclease H [Streptosporangium roseum DSM 43021]
 gi|270513629|gb|ACZ91907.1| Ribonuclease H [Streptosporangium roseum DSM 43021]
          Length = 222

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/199 (38%), Positives = 109/199 (54%), Gaps = 3/199 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P + LE ++       VAG+DEVGRGA AGPV V A++ D +  P G+ DSK +S  +R 
Sbjct: 3   PSYALERLLSADGTKLVAGVDEVGRGAWAGPVAVCAVVTDLSEPPAGLTDSKMLSPARRT 62

Query: 70  ELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            +  +IT  +A I    ASH+ ID   + +A   A   A+  L V P + ++DG+     
Sbjct: 63  SMVAEITGWAAGIGYGEASHEEIDALGMTEALRRAAGRALAGLPVRPDAVILDGKHDYLG 122

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
            P      IKGD   +S+AAAS+IAKV RD  M  A     +YGF  + GYP+  HQ  +
Sbjct: 123 APWPVRCEIKGDLSCVSVAAASVIAKVRRDAYM--ASLGLEEYGFADNAGYPSPVHQAAL 180

Query: 189 KEKGPSCIHRLTFRPLRNL 207
              GP+  HRL++  L +L
Sbjct: 181 ASLGPTAHHRLSWSYLDDL 199


>gi|88608875|ref|YP_506577.1| ribonuclease HII [Neorickettsia sennetsu str. Miyayama]
 gi|123491623|sp|Q2GD69|RNH2_NEOSM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|88601044|gb|ABD46512.1| ribonuclease HII [Neorickettsia sennetsu str. Miyayama]
          Length = 195

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/185 (42%), Positives = 109/185 (58%), Gaps = 6/185 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           +AG+DEVGRG LAGPVV  A+IL  N  IP    DSK +S   R   YE+I S++  +I 
Sbjct: 11  IAGVDEVGRGCLAGPVVACAVILTENLAIP---GDSKVLSRAVRLSWYEEIISNSYNAIG 67

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC--QAFAVIKGDSI 142
            +S + I+  NI  ATL A+  A+E L V+P + LIDGR I  +     +  +V+ GD I
Sbjct: 68  MSSVKEIETMNILNATLLAMERALERLPVVPTTVLIDGRDIINNAAKYKEVKSVVSGDKI 127

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I AASI+AKVTRDRLM      YP Y +  + GY T +H + + + G +  HR  F 
Sbjct: 128 YGEIKAASIVAKVTRDRLMEGLDLTYPYYRWKFNKGYGTKEHLEALAKYGVTDHHRRKFA 187

Query: 203 PLRNL 207
           P++ +
Sbjct: 188 PVKRM 192


>gi|255692962|ref|ZP_05416637.1| ribonuclease HII [Bacteroides finegoldii DSM 17565]
 gi|260621273|gb|EEX44144.1| ribonuclease HII [Bacteroides finegoldii DSM 17565]
          Length = 200

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 74/179 (41%), Positives = 106/179 (59%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++ K+R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPGDFKNELLNDSKQLTEKQRYALREVIQREAVAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + ID+ NI +A+  A++ AV+ L + P+  LIDG    +        ++KGD   LS
Sbjct: 73  VSPEEIDELNILRASFLAMHRAVDQLAIRPQHLLIDGNRFNKYPGIPHTTIVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H+++P Y +D + GYPT KH+  I E+G +  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTFNLL 191


>gi|227833393|ref|YP_002835100.1| Ribonuclease HII [Corynebacterium aurimucosum ATCC 700975]
 gi|262184381|ref|ZP_06043802.1| ribonuclease HII [Corynebacterium aurimucosum ATCC 700975]
 gi|227454409|gb|ACP33162.1| Ribonuclease HII [Corynebacterium aurimucosum ATCC 700975]
          Length = 213

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/192 (40%), Positives = 108/192 (56%), Gaps = 6/192 (3%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI---NDSKKISHKKREEL 71
           E  + +  + PVAG+DE GRGA  GPV +AA IL P+ I  G+   +DSKK++   RE+L
Sbjct: 11  EVALSKAGLGPVAGVDEAGRGACCGPVTIAACIL-PDRILPGLEWLDDSKKLTPAAREKL 69

Query: 72  YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
              I   A+  S+     + ID   I  A L  +  AV  L + P   L D   +P  LP
Sbjct: 70  EPVIKRRALAWSVVHIGAKGIDAFGIQHANLSGMRRAVAQLGIRPGYVLSDALFVP-GLP 128

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +I GD+ +  IAAAS++AKV+RDRLM    K+YP Y  ++H GY TA HQ+ I  
Sbjct: 129 APQLPIIGGDTAARCIAAASVLAKVSRDRLMADVAKQYPGYALETHKGYGTAVHQEAIAR 188

Query: 191 KGPSCIHRLTFR 202
            G +  HR+++R
Sbjct: 189 LGATPEHRMSYR 200


>gi|89890457|ref|ZP_01201967.1| ribonuclease HII, RNase HII [Flavobacteria bacterium BBFL7]
 gi|89517372|gb|EAS20029.1| ribonuclease HII, RNase HII [Flavobacteria bacterium BBFL7]
          Length = 199

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/179 (40%), Positives = 105/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
            G DE GRG L GPV  AA+IL P+     ++DSKK+S K+R +L   I   AI   +S 
Sbjct: 13  CGTDEAGRGCLCGPVTAAAVILPPDFKSDLLDDSKKLSRKRRYQLRSLIEEHAISYHVSH 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
              + ID+ NI  A++ A++ A++ L++ P    +DG         QA  VIKGD   L 
Sbjct: 73  VMMETIDEINILNASILAMHQAIDGLKINPEHIAVDGNRFKPYADIQATTVIKGDGKYLH 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M    +++P+Y +  + GYPT KH++ IK+ G +  HR+TF+ L
Sbjct: 133 IAAASILAKTYRDDYMEKIAREHPEYDWHKNQGYPTKKHREAIKKYGTTPYHRMTFKLL 191


>gi|282899032|ref|ZP_06307014.1| Ribonuclease HII/HIII [Cylindrospermopsis raciborskii CS-505]
 gi|281196172|gb|EFA71087.1| Ribonuclease HII/HIII [Cylindrospermopsis raciborskii CS-505]
          Length = 213

 Score =  128 bits (321), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/184 (42%), Positives = 110/184 (59%), Gaps = 7/184 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELYEKITSSAI 80
           +AG+DEVGRGAL GPVV AA+IL PN+     +   I DSK++S  +R  L +++   A+
Sbjct: 18  IAGVDEVGRGALFGPVVAAAVIL-PNSALSILVESKIKDSKQLSVSRRHYLAQQVAQLAV 76

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
              I  A+   ID+ NI +ATL A+  AV  L+  P   L+DG     DL  +   +I+G
Sbjct: 77  EWKIGYATTAEIDRLNILQATLLAMKRAVLKLKSQPSLCLVDGNQFIRDLLIEQQTIIQG 136

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D  SL+IAAASI+AKV RD L+    KKY  Y    + GY + KH   +++ GPS +HR 
Sbjct: 137 DRRSLNIAAASIMAKVWRDDLVVRLGKKYDMYDLHRNKGYGSRKHLLALQKYGPSPLHRR 196

Query: 200 TFRP 203
           +F P
Sbjct: 197 SFSP 200


>gi|257055033|ref|YP_003132865.1| RNase HII [Saccharomonospora viridis DSM 43017]
 gi|256584905|gb|ACU96038.1| RNase HII [Saccharomonospora viridis DSM 43017]
          Length = 275

 Score =  128 bits (321), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/194 (40%), Positives = 113/194 (58%), Gaps = 6/194 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN---IPFGINDSKKISHKKR 68
           + L+A +  + + PV G+DE GRGA AGP+VVAA +L P +   +P  + DSK ++   R
Sbjct: 17  WALQAALDRRGLGPVVGVDEAGRGACAGPLVVAACVLRPGDGAKLPE-LADSKSLTPLAR 75

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           + +YE+I   A+  SI       ID   +H A ++ +  AV  L   P   L+DG  +P 
Sbjct: 76  DRVYERILRRALDYSIVVIPPAEIDVQGVHTANIEGMRRAVAALSQRPGYVLLDGFRVP- 134

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            LP  +  V+KGD     +AAAS++AKVTRDR+M   H +YP YGF+ H GY T +H+  
Sbjct: 135 GLPAPSVPVLKGDRAVACVAAASVLAKVTRDRIMVGLHAEYPVYGFEVHKGYTTVEHRTA 194

Query: 188 IKEKGPSCIHRLTF 201
           + E GP   HR +F
Sbjct: 195 LAEHGPCEAHRWSF 208


>gi|226305946|ref|YP_002765906.1| ribonuclease HII [Rhodococcus erythropolis PR4]
 gi|259494071|sp|C0ZXT2|RNH2_RHOE4 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|226185063|dbj|BAH33167.1| putative ribonuclease HII [Rhodococcus erythropolis PR4]
          Length = 226

 Score =  128 bits (321), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 109/191 (57%), Gaps = 4/191 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREEL 71
           +E+ +    + PVAG+DE GRGA AGP+V+AA +L   P      ++DSKK++ + REEL
Sbjct: 19  MESALARTGLGPVAGVDEAGRGACAGPLVIAACVLAPKPQAALARLDDSKKLTERAREEL 78

Query: 72  YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+  S+ S     +D+  IH A ++ +  AV  L + P   L DG  +P  L 
Sbjct: 79  FPAIKRLALAWSVVSVPAAEVDQIGIHVANIEGMRRAVAGLDLEPGYVLTDGFRVP-GLT 137

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD  +  IAAAS++AKVTRDR+M    + +P YGF  H GY T  H   + E
Sbjct: 138 APSLPVIGGDGAAACIAAASVLAKVTRDRVMTEMDETHPGYGFAIHKGYSTPLHMDALDE 197

Query: 191 KGPSCIHRLTF 201
            GP   HR+T+
Sbjct: 198 LGPCPEHRMTY 208


>gi|15594392|ref|NP_212180.1| ribonuclease HII [Borrelia burgdorferi B31]
 gi|195941785|ref|ZP_03087167.1| ribonuclease H (rnhB) [Borrelia burgdorferi 80a]
 gi|216264713|ref|ZP_03436705.1| ribonuclease HII [Borrelia burgdorferi 156a]
 gi|7227916|sp|O51075|RNH2_BORBU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|2687927|gb|AAC66435.1| ribonuclease H (rnhB) [Borrelia burgdorferi B31]
 gi|215981186|gb|EEC21993.1| ribonuclease HII [Borrelia burgdorferi 156a]
 gi|312148276|gb|ADQ30935.1| ribonuclease HII [Borrelia burgdorferi JD1]
          Length = 181

 Score =  128 bits (321), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/179 (41%), Positives = 108/179 (60%), Gaps = 3/179 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
           + GIDEVGRG + GP++ AA++    P+ I   ++DSKK+  +KRE L   I  ++  + 
Sbjct: 2   ICGIDEVGRGCIFGPILSAAVVFKKKPSFIK-ELDDSKKLKKEKREYLSSLILENSYYAF 60

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +  S+  I+K NIH A+L A+  A ENL++     L+DG+ +P+       A+IKGDSI 
Sbjct: 61  AEISNITIEKINIHNASLLAMQTAYENLKLNCSLVLVDGKFVPKITAKNVKAIIKGDSII 120

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             I AASIIAKV RD+LM    K YP Y    + GYPT +H+  IK+ G   +HR  F+
Sbjct: 121 DEIKAASIIAKVKRDKLMDKYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFK 179


>gi|163786300|ref|ZP_02180748.1| ribonuclease HII [Flavobacteriales bacterium ALC-1]
 gi|159878160|gb|EDP72216.1| ribonuclease HII [Flavobacteriales bacterium ALC-1]
          Length = 200

 Score =  128 bits (321), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 104/178 (58%), Gaps = 1/178 (0%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSA 86
           G DE GRG LAGPV  AA+IL  +     +NDSK++S K R  L   I + A+  ++   
Sbjct: 15  GTDEAGRGCLAGPVTAAAVILPQSFNNKKLNDSKQLSEKNRNLLKPIIETEALSFAVHHI 74

Query: 87  SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSI 146
               ID  NI  A++ A++H+++ L++ P   ++DG         Q   +IKGDS  LSI
Sbjct: 75  FESEIDTINILNASIKAMHHSIDKLKITPNYIIVDGNKFKPYRDIQHKTIIKGDSKYLSI 134

Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           AAASI+AK  RD  M+  H+++P Y +  + GYPT +H+  IKE G +  HR +FR L
Sbjct: 135 AAASILAKTYRDEYMKKIHEEFPMYNWKQNKGYPTKEHRAAIKEFGITKYHRKSFRLL 192


>gi|121998236|ref|YP_001003023.1| ribonuclease HII [Halorhodospira halophila SL1]
 gi|189043603|sp|A1WX09|RNH2_HALHL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|121589641|gb|ABM62221.1| RNase HII [Halorhodospira halophila SL1]
          Length = 195

 Score =  128 bits (321), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/194 (40%), Positives = 109/194 (56%), Gaps = 5/194 (2%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76
           M   +  W V G+DE GRG  AGPVV AA++L       G+ DSK++S + RE     I 
Sbjct: 1   MTPSRGAWGVVGVDEAGRGPWAGPVVAAAVVL--AEPIAGVTDSKRLSARSRERAAALIR 58

Query: 77  SSAII-SISSASHQYIDKHNIHKAT-LDAIYHAVENLQVIP-RSALIDGRSIPEDLPCQA 133
           S A+   +  A    ID  NI +AT L          +  P    L+DGR IP+DLP  A
Sbjct: 59  SEAVAWGVGRADVTEIDALNIRRATFLAMARAVAVVAETSPIAEVLVDGREIPDDLPAPA 118

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             V+ GD++  +I+AASI+AK  RD  M +  + YP YGF  H GY TA+H++ ++E GP
Sbjct: 119 RPVVGGDALEPAISAASILAKTLRDAEMVLLDEAYPGYGFGRHKGYGTAEHRRALEELGP 178

Query: 194 SCIHRLTFRPLRNL 207
             +HR +F P+R L
Sbjct: 179 CPMHRRSFAPVRRL 192


>gi|313811659|gb|EFS49373.1| ribonuclease HII [Propionibacterium acnes HL083PA1]
          Length = 204

 Score =  128 bits (321), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72
           E  +    + PVAG DE GRGA AGP+V AA+ILD        G+ DSK +S  KRE L+
Sbjct: 4   ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 63

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   A+ +S         D+  + +A +  +  AV  L V P   L DG  + + L  
Sbjct: 64  NVIMDKALAVSWVGVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFQV-DGLTV 122

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               + KGDS+   +AAASI+AKV RDR+M     + P Y F  H GY TA HQ+ +KE 
Sbjct: 123 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 182

Query: 192 GPSCIHRLTFRPLRN 206
           GPS  HR+++  +R 
Sbjct: 183 GPSRQHRMSYANVRR 197


>gi|300727476|ref|ZP_07060867.1| ribonuclease HII [Prevotella bryantii B14]
 gi|299775179|gb|EFI71780.1| ribonuclease HII [Prevotella bryantii B14]
          Length = 203

 Score =  128 bits (321), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 83/183 (45%), Positives = 112/183 (61%), Gaps = 9/183 (4%)

Query: 27  AGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
           AG DE GRG LAG V  AA+IL  D NN    +NDSK++S KKR  L E+I   A+  +I
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPADYNNPE--LNDSKQLSLKKRYALREQIQKDAVAWAI 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDS 141
              + + IDK NI  A+  A++ A+E LQV P++ +IDG      +DLP     ++KGDS
Sbjct: 71  GVVTPEEIDKINILHASFLAMHRAIEQLQVKPQALIIDGNHFDPYKDLPYTT--IVKGDS 128

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
              SIAAASI+AK  RD  M+   ++YP Y + S+ GYPT KH+  I+E G S  HR ++
Sbjct: 129 KYQSIAAASILAKTYRDDYMKALAEEYPYYDWASNKGYPTKKHRLGIREHGVSPYHRKSY 188

Query: 202 RPL 204
             L
Sbjct: 189 NLL 191


>gi|223889172|ref|ZP_03623761.1| ribonuclease HII [Borrelia burgdorferi 64b]
 gi|223885421|gb|EEF56522.1| ribonuclease HII [Borrelia burgdorferi 64b]
          Length = 181

 Score =  128 bits (321), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/179 (41%), Positives = 108/179 (60%), Gaps = 3/179 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
           + GIDEVGRG + GP++ AA++    P+ I   ++DSKK+  +KRE L   I  ++  + 
Sbjct: 2   ICGIDEVGRGCIFGPILSAAVVFKKKPSFIK-ELDDSKKLKKEKREYLSSLILENSYYAF 60

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +  S+  I+K NIH A+L A+  A ENL++     L+DG+ +P+       A+IKGDSI 
Sbjct: 61  AEISNITIEKINIHNASLLAMQTAYENLKLNCSLVLVDGKFVPKITAKNVKAIIKGDSII 120

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             I AASIIAKV RD+LM    K YP Y    + GYPT +H+  IK+ G   +HR  F+
Sbjct: 121 DEIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFK 179


>gi|188996137|ref|YP_001930388.1| Ribonuclease H [Sulfurihydrogenibium sp. YO3AOP1]
 gi|229564299|sp|B2V752|RNH2_SULSY RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|188931204|gb|ACD65834.1| Ribonuclease H [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 197

 Score =  127 bits (320), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/177 (44%), Positives = 109/177 (61%), Gaps = 3/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDE GRG LAGP+V+A++I   +  PF   DSK +S K+RE L+EKI   A  I+I+
Sbjct: 16  IVGIDEAGRGPLAGPLVIASVIFPKHQKPFIHTDSKGLSEKEREYLFEKIHDYAEEINIT 75

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
              +  IDK  I  A    + + +++L+     AL+D   + E +      +IKGD IS 
Sbjct: 76  IVENTEIDKFGISNAAKIYMENNLKSLKSKWDIALVDFVKLDESI--NHLPLIKGDEISH 133

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +IAAASIIAKV RDR+M    +KYP++ FD H GY T +H Q IK+ G + IHR +F
Sbjct: 134 TIAAASIIAKVVRDRIMIEYKEKYPNFSFDKHKGYATKQHYQEIKKFGITPIHRRSF 190


>gi|296394368|ref|YP_003659252.1| ribonuclease H [Segniliparus rotundus DSM 44985]
 gi|296181515|gb|ADG98421.1| Ribonuclease H [Segniliparus rotundus DSM 44985]
          Length = 221

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 73/195 (37%), Positives = 110/195 (56%), Gaps = 6/195 (3%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN---IPFGINDSKKISHKKREE 70
            EA +R      VAG+DE GRGA AGP+VVA+ +L P +   +P G++DSK+++ +KRE 
Sbjct: 24  FEAALRRAGYTSVAGVDEAGRGACAGPLVVASCVLKPRSARALP-GLDDSKRLTAQKREW 82

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L  +I   ++   +       +D   +H+A L+ +  AV  L   P   L+DG  +P  +
Sbjct: 83  LEPRIREQSLGWHVVVMPPAEVDAMGVHQANLEGMRRAVAGLAQPPDYVLMDGFDVP-GM 141

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P  A  V+ GD +   IAAAS++AKV RDR+M    +    YGF +H GY TA H   + 
Sbjct: 142 PSPAQRVVGGDRLVACIAAASVLAKVARDRIMVALDQSRSGYGFAAHKGYCTAAHMSALA 201

Query: 190 EKGPSCIHRLTFRPL 204
           + GP   HR ++ P+
Sbjct: 202 QFGPCEHHRYSYAPV 216


>gi|167630260|ref|YP_001680759.1| ribonuclease hii [Heliobacterium modesticaldum Ice1]
 gi|167593000|gb|ABZ84748.1| ribonuclease hii [Heliobacterium modesticaldum Ice1]
          Length = 205

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/195 (41%), Positives = 112/195 (57%), Gaps = 1/195 (0%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E+++R K    +AG+DE GRG+LAGPVV AA+IL    +  G+NDSKK+S  +RE L 
Sbjct: 7   ERESLLRRKGFHVIAGVDEAGRGSLAGPVVAAAVILPLGCMMEGLNDSKKLSPARREALA 66

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I   A+   I   S Q ID+  I  +T  A+  A++ L   P   ++DG         
Sbjct: 67  VEIKRLALAWGIGIVSSQVIDRIGIVPSTFRAMSLAIDRLGDRPDYLIVDGNQKVPGYEG 126

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              A+I GD+++  +AAASI+AKV RD LM+     +P YGF+ H GY T  H+  I E+
Sbjct: 127 TQEALIDGDALAAPVAAASILAKVVRDGLMKRYSLFFPGYGFEQHKGYGTQAHRSAILEQ 186

Query: 192 GPSCIHRLTFRPLRN 206
           G   +HR TF  LR 
Sbjct: 187 GTCLLHRETFVHLRR 201


>gi|238022898|ref|ZP_04603324.1| hypothetical protein GCWU000324_02819 [Kingella oralis ATCC 51147]
 gi|237865706|gb|EEP66844.1| hypothetical protein GCWU000324_02819 [Kingella oralis ATCC 51147]
          Length = 200

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 73/182 (40%), Positives = 105/182 (57%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85
           AG+DE GRG L G V  AA++L  +    G+ DSKK+S  KR+ L  +I   A + +++S
Sbjct: 11  AGVDEAGRGCLVGSVFAAAVMLPVHYDLPGLTDSKKLSEAKRDALAAQIKRQATVWAVAS 70

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A+   I + NI  AT+ A+  AV  L   P    IDG  +P DL   A AV+KGD+   +
Sbjct: 71  ANPAEIQRLNILHATMLAMCRAVAALPRQPEKVWIDGNRVPPDLAVPAEAVVKGDAKIAA 130

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           ++AASI+AK  RD  M   H+++P+YGF  H GY TA H   ++  G    HR  F P++
Sbjct: 131 VSAASILAKTARDAEMYALHERHPEYGFAQHKGYGTAAHLAALQRYGALPEHRADFAPVK 190

Query: 206 NL 207
            +
Sbjct: 191 QI 192


>gi|225552167|ref|ZP_03773107.1| ribonuclease HII [Borrelia sp. SV1]
 gi|225371165|gb|EEH00595.1| ribonuclease HII [Borrelia sp. SV1]
          Length = 181

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 105/178 (58%), Gaps = 1/178 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84
           + GIDEVGRG + GP++ AA++          ++DSKK+  +KRE L   I  ++  + +
Sbjct: 2   ICGIDEVGRGCIFGPILSAAVVFKKKTSFINELDDSKKLKKEKREYLSSLILENSYYAFA 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S+  I+K NIH A+L A+  A ENL++     L+DG+ +P+       A+IKGDSI  
Sbjct: 62  EISNITIEKINIHNASLLAMQTAYENLKLNCSLVLVDGKFVPKITAKNVKAIIKGDSIID 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            I AASIIAKV RD+LM    K YP Y    + GYPT +H+  IK+ G   +HR  F+
Sbjct: 122 EIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFK 179


>gi|218249357|ref|YP_002374579.1| ribonuclease HII [Borrelia burgdorferi ZS7]
 gi|221217459|ref|ZP_03588930.1| ribonuclease HII [Borrelia burgdorferi 72a]
 gi|224533017|ref|ZP_03673623.1| ribonuclease HII [Borrelia burgdorferi WI91-23]
 gi|225549702|ref|ZP_03770667.1| ribonuclease HII [Borrelia burgdorferi 118a]
 gi|226320780|ref|ZP_03796336.1| ribonuclease HII [Borrelia burgdorferi 29805]
 gi|226322040|ref|ZP_03797565.1| ribonuclease HII [Borrelia burgdorferi Bol26]
 gi|226736816|sp|B7J0Y4|RNH2_BORBZ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|218164545|gb|ACK74606.1| ribonuclease HII [Borrelia burgdorferi ZS7]
 gi|221192737|gb|EEE18953.1| ribonuclease HII [Borrelia burgdorferi 72a]
 gi|224512011|gb|EEF82406.1| ribonuclease HII [Borrelia burgdorferi WI91-23]
 gi|225369662|gb|EEG99110.1| ribonuclease HII [Borrelia burgdorferi 118a]
 gi|226232630|gb|EEH31384.1| ribonuclease HII [Borrelia burgdorferi Bol26]
 gi|226233835|gb|EEH32560.1| ribonuclease HII [Borrelia burgdorferi 29805]
 gi|312149652|gb|ADQ29723.1| ribonuclease HII [Borrelia burgdorferi N40]
          Length = 181

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/179 (41%), Positives = 108/179 (60%), Gaps = 3/179 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
           + GIDEVGRG + GP++ AA++    P+ I   ++DSKK+  +KRE L   I  ++  + 
Sbjct: 2   ICGIDEVGRGCIFGPILSAAVVFKKKPSFIK-ELDDSKKLKKEKREYLSSLILKNSYYAF 60

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +  S+  I+K NIH A+L A+  A ENL++     L+DG+ +P+       A+IKGDSI 
Sbjct: 61  AEISNITIEKINIHNASLLAMQTAYENLKLNCSLVLVDGKFVPKITAKNVKAIIKGDSII 120

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             I AASIIAKV RD+LM    K YP Y    + GYPT +H+  IK+ G   +HR  F+
Sbjct: 121 DEIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFK 179


>gi|239908101|ref|YP_002954842.1| ribonuclease HII [Desulfovibrio magneticus RS-1]
 gi|239797967|dbj|BAH76956.1| ribonuclease HII [Desulfovibrio magneticus RS-1]
          Length = 210

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/186 (41%), Positives = 109/186 (58%), Gaps = 10/186 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83
           VAG+DE GRG LAGPV   A+IL +   +P G+ DSKK++  KRE L   I + A+  ++
Sbjct: 10  VAGVDEAGRGCLAGPVAAGAVILPEIYELP-GLTDSKKLTPAKREALAPAIKAQALAWAV 68

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA-------V 136
           +      ID+ NI +AT  A+  A+ +L++ P  A IDG  I  +      A       V
Sbjct: 69  AFVWPGEIDRINILQATFAAMAKALAHLRLFPGLACIDGNKIIPEAYLGLLAGRLRQECV 128

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           I GD+   +I+AASI+AK  RDRL+ +  +++P YGF +H GY  A H   ++  GP  I
Sbjct: 129 IGGDASVPAISAASILAKTARDRLLDLYDRRHPGYGFAAHKGYGVAVHLDALRRLGPCSI 188

Query: 197 HRLTFR 202
           HRLTFR
Sbjct: 189 HRLTFR 194


>gi|85707870|ref|ZP_01038936.1| ribonuclease HII [Erythrobacter sp. NAP1]
 gi|85689404|gb|EAQ29407.1| ribonuclease HII [Erythrobacter sp. NAP1]
          Length = 206

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/190 (40%), Positives = 114/190 (60%), Gaps = 9/190 (4%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87
           G+DE GRG LAGPVV AA++L    +P GI DSKK+S K+R  L E++ +    +++   
Sbjct: 17  GVDEAGRGPLAGPVVAAAVVLG-EGLPAGIGDSKKLSAKRRAALDEELRACCKWAVAVVE 75

Query: 88  HQYIDKHNIHKATLDAIYHAVENLQV-IPRS---ALIDGRSIPE----DLPCQAFAVIKG 139
              ID+ NI +AT++A+   V +L   +P S    LIDG   PE    +    A A++ G
Sbjct: 76  ADEIDRLNIFQATMEAMTRCVRDLAAQLPGSPDIVLIDGNQTPERRCAEWRWPARAIVGG 135

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D I  SI AASIIAK  RDR+M  A + +P YG++ + GY T +H + ++  GP+ +HR 
Sbjct: 136 DGIEPSIGAASIIAKEWRDRMMIAAARAHPAYGWERNKGYGTKEHMEALRLHGPTSLHRQ 195

Query: 200 TFRPLRNLSV 209
           +F P+   S+
Sbjct: 196 SFAPVAQASL 205


>gi|68536259|ref|YP_250964.1| ribonuclease HII [Corynebacterium jeikeium K411]
 gi|260578959|ref|ZP_05846862.1| ribonuclease HII [Corynebacterium jeikeium ATCC 43734]
 gi|97182389|sp|Q4JV11|RNH2_CORJK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|68263858|emb|CAI37346.1| rnhB [Corynebacterium jeikeium K411]
 gi|258602933|gb|EEW16207.1| ribonuclease HII [Corynebacterium jeikeium ATCC 43734]
          Length = 208

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 73/193 (37%), Positives = 108/193 (55%), Gaps = 5/193 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN---DSKKISHKKREE 70
           +E  +    + PVAG+DE GRGA  GP+ +AA IL  +    G++   DSKK++ K RE 
Sbjct: 1   MERELESAGLGPVAGVDEAGRGACCGPISIAACILPSDLDGVGLDRLTDSKKLTEKTRER 60

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY+ I   A+  SI   S + ID+  I  A +  +  AV  L V P   L D   +P  L
Sbjct: 61  LYDVIRDVAVSYSIIHISAEDIDRFGIQHANVSGMRRAVAALDVQPGYVLTDAVKVP-GL 119

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     V+KGD ++  I+AAS++AKV+RDR++R   +++P YG  SH GY T  H   + 
Sbjct: 120 PMPHLPVVKGDQMAKCISAASVLAKVSRDRVLRTLDEEFPGYGLASHKGYGTKAHMTAVS 179

Query: 190 EKGPSCIHRLTFR 202
             G +  HR +++
Sbjct: 180 LHGGTPYHRYSYK 192


>gi|149371924|ref|ZP_01891243.1| ribonuclease HII [unidentified eubacterium SCB49]
 gi|149355064|gb|EDM43625.1| ribonuclease HII [unidentified eubacterium SCB49]
          Length = 199

 Score =  127 bits (320), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 76/179 (42%), Positives = 101/179 (56%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
            G DE GRG L+GPV  AA+IL  N     + DSK++SHKKR EL   I  +AI   +  
Sbjct: 13  CGTDEAGRGCLSGPVTAAAVILPDNFSHPWLTDSKQLSHKKRMELKPIIEEAAISYGVCH 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
                IDK NI  A++ A++ +++ L   P+   IDG             VIKGD   L 
Sbjct: 73  VMMDEIDKINILNASILAMHRSIDKLTTAPQFIAIDGNRFKPYAEIPYECVIKGDGKFLH 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M+  H+K+P Y +  + GYPT +H+  I+E GPS  HR +FR L
Sbjct: 133 IAAASILAKTHRDLYMQELHEKFPMYNWQKNKGYPTKEHRAAIREHGPSPYHRKSFRLL 191


>gi|284008506|emb|CBA75018.1| ribonuclease HII [Arsenophonus nasoniae]
          Length = 174

 Score =  127 bits (320), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 74/168 (44%), Positives = 100/168 (59%), Gaps = 2/168 (1%)

Query: 41  VVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKA 99
           +V AA+ILDP     G+ DSKK++ K+R  L  +I   A+  SI  A  + IDK NI +A
Sbjct: 1   MVTAAVILDPKQPIIGLADSKKLTEKRRNALCIEILDKALCWSIGRAEPEEIDKINILQA 60

Query: 100 TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR 159
           T  A+  AV  L   P   L+DG   P   P  + A+IKGDS+   I+AASI+AKVTRDR
Sbjct: 61  TFLAMRRAVAGLTTRPDIVLVDGNKSP-GFPVPSQAIIKGDSLVQEISAASILAKVTRDR 119

Query: 160 LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
            MR     +P+YGF  H GYPTA H + + + G +  HR +F P+R +
Sbjct: 120 EMRELDILFPEYGFAQHKGYPTAFHLEKLAQHGATQFHRKSFAPVRRV 167


>gi|255524250|ref|ZP_05391209.1| Ribonuclease H [Clostridium carboxidivorans P7]
 gi|296185372|ref|ZP_06853782.1| ribonuclease HII [Clostridium carboxidivorans P7]
 gi|255512075|gb|EET88356.1| Ribonuclease H [Clostridium carboxidivorans P7]
 gi|296050206|gb|EFG89630.1| ribonuclease HII [Clostridium carboxidivorans P7]
          Length = 293

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/192 (41%), Positives = 114/192 (59%), Gaps = 9/192 (4%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIIL-----DPNNIPFGINDSKKISHKKREELYEKIT 76
           N   +AG+DEVGRG LAGP+   +++L     D  ++  GI DSKK+SH  RE L + I 
Sbjct: 98  NYVYIAGVDEVGRGPLAGPIAAGSVVLNLRSHDFKDLLLGIKDSKKLSHDTRERLSKLIK 157

Query: 77  SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135
           + +I  +IS  ++  ID+  I     + +  A   L++ P   L DG ++ ++L  +   
Sbjct: 158 AKSISYNISVINNAEIDERGIAWCNNEVLRRAASGLKITPDLVLSDGYAV-KNLNIENEF 216

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           VIKGD+ S SIA ASIIAKV RD LM+   K YP YGF+ + GY T +H + IK+ G   
Sbjct: 217 VIKGDAKSASIACASIIAKVYRDNLMQEYAKIYPQYGFERNSGYGTEEHIEAIKKYGICK 276

Query: 196 IHRLTFRPLRNL 207
           IHR +F  L+N+
Sbjct: 277 IHRKSF--LKNI 286


>gi|55980167|ref|YP_143464.1| ribonuclease HII [Thermus thermophilus HB8]
 gi|73917835|sp|Q5SLU5|RNH2_THET8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|55771580|dbj|BAD70021.1| ribonuclease HII [Thermus thermophilus HB8]
          Length = 203

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 79/192 (41%), Positives = 109/192 (56%), Gaps = 6/192 (3%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
           LEA    K +  VAG+DE GRGA AGP+VV A++L P   PF   DSK +S K RE L E
Sbjct: 6   LEAPFWRKGLL-VAGLDEAGRGAWAGPIVVGAVVLPPGEYPF--RDSKLLSPKARERLAE 62

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           K+   A+  ++  A    +D+  + KATL A   A+ +L + P + + D   +P      
Sbjct: 63  KVKEVALAFALGVAEAAEVDRLGVLKATLLAAERALLSLPLAPEALVTDYLPLPTP--LP 120

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             +  K D  S ++AAASI+AKV RDR+M    + YP YGF  H GY T +HQ+ +   G
Sbjct: 121 LLSPPKADEKSPTVAAASILAKVHRDRIMDELDRLYPGYGFARHKGYGTQEHQEALLALG 180

Query: 193 PSCIHRLTFRPL 204
           PS +HR  F P+
Sbjct: 181 PSPVHRKRFAPV 192


>gi|325954163|ref|YP_004237823.1| ribonuclease H [Weeksella virosa DSM 16922]
 gi|323436781|gb|ADX67245.1| Ribonuclease H [Weeksella virosa DSM 16922]
          Length = 199

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 74/190 (38%), Positives = 113/190 (59%), Gaps = 6/190 (3%)

Query: 17  MVRE-KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           M+R+  NM    G DE GRG LAGPV+ AA++         I DSK ++  KR  L E I
Sbjct: 1   MLRKLTNMDYECGCDEAGRGCLAGPVIAAAVVFPNEFFDSTIIDSKLLTKIKRNNLRELI 60

Query: 76  TSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQ 132
            ++ + + I    +Q ID+ NI  A+ +A++ A+  L + P   ++DG      +++P +
Sbjct: 61  NTNVLTAEIGFVDNQEIDELNILNASFEAMHRAINKLSIEPDFIIVDGNRFKPYKNIPHE 120

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              ++KGD+  +SIAAASI+AK  RD  M+  HK+YP Y +D + GYPT +H++ I+E G
Sbjct: 121 C--IVKGDAKYISIAAASILAKTYRDEYMQKIHKEYPMYHWDKNKGYPTKQHREAIREFG 178

Query: 193 PSCIHRLTFR 202
            S  HR +FR
Sbjct: 179 VSPYHRTSFR 188


>gi|281491813|ref|YP_003353793.1| ribonuclease HII [Lactococcus lactis subsp. lactis KF147]
 gi|281375527|gb|ADA65037.1| Ribonuclease HII [Lactococcus lactis subsp. lactis KF147]
          Length = 258

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 85/198 (42%), Positives = 120/198 (60%), Gaps = 5/198 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREE 70
            E E  +  + +  +AGIDEVGRG LAGPVV AA+IL PNN    G+NDSKK+   K   
Sbjct: 59  LEFEKELYGQGIQLIAGIDEVGRGPLAGPVVTAAVIL-PNNCKIRGLNDSKKVPKSKHHA 117

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           +  +I   A+ I I     + ID+ NI++AT  A+  AV  L V P   LID   +  DL
Sbjct: 118 ILSEIQEKALAIGIGIVDAEKIDEVNIYEATKIAMIQAVSKLSVKPEHLLIDAMVL--DL 175

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +I GD+ S SIAAASI+AKVTRD +M+    ++P+Y F+ + GY TAKH + + 
Sbjct: 176 PIAQTKIIHGDARSASIAAASIVAKVTRDEMMKEFALEFPEYDFEHNAGYGTAKHLEALT 235

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + G + IHR ++ P++ +
Sbjct: 236 KYGITRIHRKSYEPIKTM 253


>gi|327441071|dbj|BAK17436.1| ribonuclease HII [Solibacillus silvestris StLB046]
          Length = 257

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 80/185 (43%), Positives = 119/185 (64%), Gaps = 6/185 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAII-S 82
           +AG DE GRG LAGPVV AA+IL PN+     G+NDSK++S +KR +  E+I   A+  +
Sbjct: 71  IAGTDEAGRGPLAGPVVTAAVIL-PNHCQELLGVNDSKQLSKEKRNQFAERIKKHALYYA 129

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +   S + ID+ NI++AT  ++  ++E L+V P   L D  ++   +P QA ++IKGD+ 
Sbjct: 130 VHFQSAEEIDRLNIYEATRQSMLKSIEALEVTPNYILADAMTLSTSIP-QA-SIIKGDAR 187

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           SL+IAAASI+AK  RD  M     ++P YGF  H GY T +H + I + GP+  HR TF 
Sbjct: 188 SLAIAAASILAKTARDDYMEKLDLEFPQYGFAQHAGYGTKQHLEAIAQYGPTIHHRKTFE 247

Query: 203 PLRNL 207
           P++++
Sbjct: 248 PIKSI 252


>gi|307718734|ref|YP_003874266.1| ribonuclease HII [Spirochaeta thermophila DSM 6192]
 gi|306532459|gb|ADN01993.1| ribonuclease HII [Spirochaeta thermophila DSM 6192]
          Length = 193

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 81/183 (44%), Positives = 106/183 (57%), Gaps = 8/183 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           V GIDEVGRG LAGPVV AA++L P     G+ DSKK+S ++RE L+  I  +A      
Sbjct: 4   VCGIDEVGRGPLAGPVVAAAVVLTPGTSLPGLKDSKKLSPEERERLFPLILEAAAAVGVG 63

Query: 86  ASHQY-IDKHNIHKATLDAIYHAVENL------QVIPRSALIDGRSIPEDLPCQAFAVIK 138
            +  + +D+ NIH ATL A+  A E L       ++P   +IDGR  P  +   A AV+K
Sbjct: 64  WAWPHEVDRFNIHNATLKAMERAYEMLIQKLSPSLVPTEVVIDGRHAPPSI-THARAVVK 122

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
            DS    + AASI+AKV RD  M+I H+  P+Y F  H GYPT  H++ I   G   IHR
Sbjct: 123 ADSFVPEVMAASIVAKVFRDEWMKIYHRFLPEYTFSQHKGYPTRLHRERILTIGSCPIHR 182

Query: 199 LTF 201
            TF
Sbjct: 183 RTF 185


>gi|332881721|ref|ZP_08449369.1| ribonuclease HII [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332680360|gb|EGJ53309.1| ribonuclease HII [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 207

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 75/181 (41%), Positives = 108/181 (59%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG LAG V  AA+IL  +     +NDSK++S KKR  L E+I   A+  ++  
Sbjct: 13  AGLDEAGRGCLAGAVYAAAVILQKDYRNEMLNDSKQLSEKKRYLLREQIERDALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143
            + Q ID+ NI  A+  A++ A++ L V P + L+DG       DLP     V+KGD   
Sbjct: 73  VTPQEIDEINILNASFLAMHRALDQLAVRPEALLVDGNRFKPYRDLPHTT--VVKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           +SIAAASI+AK  RD  M   H++YP Y +DS+ GYP   H++ I+  G +  HR+++  
Sbjct: 131 MSIAAASILAKTYRDDYMLRLHEEYPVYHWDSNKGYPAKAHREAIRRHGVTPYHRMSYNL 190

Query: 204 L 204
           L
Sbjct: 191 L 191


>gi|224533903|ref|ZP_03674488.1| ribonuclease HII [Borrelia burgdorferi CA-11.2a]
 gi|225549198|ref|ZP_03770171.1| ribonuclease HII [Borrelia burgdorferi 94a]
 gi|224512906|gb|EEF83272.1| ribonuclease HII [Borrelia burgdorferi CA-11.2a]
 gi|225370056|gb|EEG99496.1| ribonuclease HII [Borrelia burgdorferi 94a]
          Length = 181

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/179 (41%), Positives = 107/179 (59%), Gaps = 3/179 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREELYEKITSSAIISI 83
           + GIDEVGRG + GP++ AA++     + F   ++DSKK+  +KRE L   I  ++  + 
Sbjct: 2   ICGIDEVGRGCIFGPILSAAVVF-KKKLGFIKELDDSKKLKKEKREYLSSLILENSYYAF 60

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +  S+  I+K NIH A+L A+  A ENL++     L+DG+ +P+       A+IKGDSI 
Sbjct: 61  AEISNITIEKINIHNASLLAMQTAYENLKLNCSLVLVDGKFVPKITAKNVKAIIKGDSII 120

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             I AASIIAKV RD+LM    K YP Y    + GYPT +H+  IK+ G   +HR  F+
Sbjct: 121 DEIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFK 179


>gi|116872706|ref|YP_849487.1| ribonuclease HII [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|123458431|sp|A0AI76|RNH2_LISW6 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|116741584|emb|CAK20708.1| ribonuclease HII [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 261

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/195 (43%), Positives = 119/195 (61%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E  +  +    +AG+DEVGRG LAGPVV AA+IL  +    GINDSK++S  KR+ L+
Sbjct: 60  QYETNLSTQGFQYIAGVDEVGRGPLAGPVVAAAVILPADFSLLGINDSKQLSEAKRDMLF 119

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E I   A+ I +    H  ID+ NI++AT  A+  A++ L   P   L+D  ++P     
Sbjct: 120 EIIKKEALSIGVGIIEHDMIDQVNIYEATKLAMSEALDQLNPAPDFILVD--AMPLKYSE 177

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASIIAKVTRDR+M+     YP Y F +++GY T KH   +   
Sbjct: 178 SELSLIKGDTKSISIAAASIIAKVTRDRMMQHYDALYPGYDFANNMGYGTKKHLNGLDTI 237

Query: 192 GPSCIHRLTFRPLRN 206
           G   IHRL+F P++ 
Sbjct: 238 GVCPIHRLSFSPVKE 252


>gi|291294813|ref|YP_003506211.1| ribonuclease H [Meiothermus ruber DSM 1279]
 gi|290469772|gb|ADD27191.1| Ribonuclease H [Meiothermus ruber DSM 1279]
          Length = 215

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/205 (39%), Positives = 108/205 (52%), Gaps = 20/205 (9%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYE 73
           E + W     VAG+DE GRGALAGPVV AA+IL P   P  +   DSK ++ + RE L E
Sbjct: 5   ESDWWKLGLRVAGVDEAGRGALAGPVVAAAVILPPPKEPALYPFRDSKTLTPRAREHLAE 64

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE----- 127
           ++ + A+   +  A    ID+  I +AT  A   A+E L+V P + L D   + +     
Sbjct: 65  QVRAVALAWGVGWAEVAEIDRLGILRATHLAAARALEQLKVSPEALLTDYLRLEQEWQQY 124

Query: 128 --------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
                   D P    A  K D  S ++AAASI+AKV RDR M    ++YP YGF  H GY
Sbjct: 125 LRNNPSRPDAPHLLRAPPKADRHSPTVAAASILAKVARDRYMEALEQRYPGYGFAQHKGY 184

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPL 204
            T  H + +K  GP   HR TF P+
Sbjct: 185 GTTLHLRALKALGPCGAHRRTFAPV 209


>gi|313831400|gb|EFS69114.1| ribonuclease HII [Propionibacterium acnes HL007PA1]
 gi|313835012|gb|EFS72726.1| ribonuclease HII [Propionibacterium acnes HL056PA1]
 gi|314974275|gb|EFT18371.1| ribonuclease HII [Propionibacterium acnes HL053PA1]
 gi|314976720|gb|EFT20815.1| ribonuclease HII [Propionibacterium acnes HL045PA1]
 gi|314984422|gb|EFT28514.1| ribonuclease HII [Propionibacterium acnes HL005PA1]
 gi|315081336|gb|EFT53312.1| ribonuclease HII [Propionibacterium acnes HL078PA1]
 gi|315095246|gb|EFT67222.1| ribonuclease HII [Propionibacterium acnes HL038PA1]
 gi|327328324|gb|EGE70086.1| ribonuclease HII [Propionibacterium acnes HL096PA2]
 gi|327444349|gb|EGE91003.1| ribonuclease HII [Propionibacterium acnes HL043PA2]
 gi|327445013|gb|EGE91667.1| ribonuclease HII [Propionibacterium acnes HL043PA1]
 gi|328760136|gb|EGF73714.1| ribonuclease HII [Propionibacterium acnes HL099PA1]
          Length = 204

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72
           E  +    + PVAG DE GRGA AGP+V AA+ILD        G+ DSK +S  KRE L+
Sbjct: 4   ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 63

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   A+ +S         D+  + +A +  +  AV  L V P   L DG  + + L  
Sbjct: 64  NVIMDKALAVSWVGVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 122

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               + KGDS+   +AAASI+AKV RDR+M     + P Y F  H GY TA HQ+ +KE 
Sbjct: 123 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 182

Query: 192 GPSCIHRLTFRPLRN 206
           GPS  HR+++  +R 
Sbjct: 183 GPSRQHRMSYANVRR 197


>gi|260591769|ref|ZP_05857227.1| ribonuclease HII [Prevotella veroralis F0319]
 gi|260536053|gb|EEX18670.1| ribonuclease HII [Prevotella veroralis F0319]
          Length = 200

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/181 (43%), Positives = 111/181 (61%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  N     +NDSKK+S KKR  L + I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPTNYKNDLLNDSKKLSAKKRYALRKIIEHDAIAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIP-EDLPCQAFAVIKGDSIS 143
            + + IDK NI  A+  A++ A++ L++ P + ++DG R  P +DLP     ++KGD   
Sbjct: 73  VTPEEIDKINILNASFLAMHRALDQLKMRPEAIIVDGNRFTPYQDLPFTT--IVKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAASI+AK  RD  M    +KYP Y + S++GYPT KH++ I++ G +  HR ++  
Sbjct: 131 LSIAAASILAKTYRDDYMLSLAEKYPQYDWQSNMGYPTKKHREAIRQYGITPFHRKSYNL 190

Query: 204 L 204
           L
Sbjct: 191 L 191


>gi|295130970|ref|YP_003581633.1| ribonuclease HII [Propionibacterium acnes SK137]
 gi|291377067|gb|ADE00922.1| ribonuclease HII [Propionibacterium acnes SK137]
          Length = 217

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72
           E  +    + PVAG DE GRGA AGP+V AA+ILD        G+ DSK +S  KRE L+
Sbjct: 17  ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 76

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   A+ +S         D+  + +A +  +  AV  L V P   L DG  + + L  
Sbjct: 77  NVIMDKALAVSWVGVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 135

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               + KGDS+   +AAASI+AKV RDR+M     + P Y F  H GY TA HQ+ +KE 
Sbjct: 136 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 195

Query: 192 GPSCIHRLTFRPLRN 206
           GPS  HR+++  +R 
Sbjct: 196 GPSRQHRMSYANVRR 210


>gi|16800380|ref|NP_470648.1| ribonuclease HII [Listeria innocua Clip11262]
 gi|38258629|sp|Q92C79|RNH2_LISIN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|16413785|emb|CAC96543.1| rnhB [Listeria innocua Clip11262]
          Length = 261

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/182 (46%), Positives = 116/182 (63%), Gaps = 3/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG LAGPVV AA+IL  +    GINDSK+++  KR+ L++ I   AI I I 
Sbjct: 73  IAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLNEAKRDILFDVIKEEAISIGIG 132

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
              H  ID+ NI++AT  A+  A+E L   P   LID  ++P        ++IKGD+ S+
Sbjct: 133 IIDHDVIDQVNIYEATKIAMRTALEELNPAPDFVLID--AMPLKYSESELSLIKGDTKSI 190

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASIIAKVTRDR+M+   + YP Y F +++GY T KH   +   G   IHRL+F P+
Sbjct: 191 SIAAASIIAKVTRDRMMQQYDELYPGYDFANNMGYGTKKHLNGLDTIGICPIHRLSFSPV 250

Query: 205 RN 206
           + 
Sbjct: 251 KE 252


>gi|163754098|ref|ZP_02161221.1| ribonuclease HII [Kordia algicida OT-1]
 gi|161326312|gb|EDP97638.1| ribonuclease HII [Kordia algicida OT-1]
          Length = 198

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/183 (40%), Positives = 108/183 (59%), Gaps = 9/183 (4%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86
           AG DE GRG LAGPV  AA+IL  +     +NDSK++S KKRE L   I   A+      
Sbjct: 12  AGTDEAGRGCLAGPVTAAAVILPKDFSNEILNDSKQLSEKKREILRPVIELEALTF--GV 69

Query: 87  SHQY---IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDS 141
           +H Y   IDK NI  A++  ++ A+  L  +P   ++DG      +D+P Q   +IKGD 
Sbjct: 70  AHIYPVEIDKINILNASILGMHQAIAKLSTVPEHIIVDGNKFKPYKDIPYQT--IIKGDG 127

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             L+IAAAS++AK  RD  M   H+++P Y +  + GYPT +H++ IK+ G +  HR++F
Sbjct: 128 KYLNIAAASVLAKTYRDAYMEKIHEEFPMYNWKKNKGYPTVEHREAIKKYGTTKYHRMSF 187

Query: 202 RPL 204
           R L
Sbjct: 188 RLL 190


>gi|229491398|ref|ZP_04385222.1| ribonuclease HII [Rhodococcus erythropolis SK121]
 gi|229321683|gb|EEN87480.1| ribonuclease HII [Rhodococcus erythropolis SK121]
          Length = 226

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 109/191 (57%), Gaps = 4/191 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREEL 71
           +E+ +    + PVAG+DE GRGA AGP+V+AA +L   P      ++DSKK++ + REEL
Sbjct: 19  MESALARTGLGPVAGVDEAGRGACAGPLVIAACVLAPKPQAALARLDDSKKLTERAREEL 78

Query: 72  YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+  S+ S     +D+  IH A ++ +  AV +L + P   L DG  +P  L 
Sbjct: 79  FPAIKRLALAWSVISVPAAEVDQIGIHVANIEGMRRAVASLDLEPGYVLTDGFRVP-GLT 137

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD  +  IAAAS++AKVTRDR+M      +P YGF  H GY T  H   + E
Sbjct: 138 APSLPVIGGDGAAACIAAASVLAKVTRDRVMTEMDDTHPGYGFAIHKGYSTPLHMDALDE 197

Query: 191 KGPSCIHRLTF 201
            GP   HR+T+
Sbjct: 198 LGPCPEHRMTY 208


>gi|295396862|ref|ZP_06806990.1| ribonuclease HII [Aerococcus viridans ATCC 11563]
 gi|294974888|gb|EFG50587.1| ribonuclease HII [Aerococcus viridans ATCC 11563]
          Length = 269

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/193 (43%), Positives = 113/193 (58%), Gaps = 1/193 (0%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +R++    +AG+DEVGRG LAGPVV +A+IL  +  P   NDSK++SH KR+ L   
Sbjct: 75  ENELRQQGYQLIAGVDEVGRGPLAGPVVTSAVILPSDMPPVYFNDSKQLSHTKRQALVAD 134

Query: 75  ITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI  +I   + + ID+ NI  AT  A+  A+  L   P   LID   + +      
Sbjct: 135 IEKYAIAKTIGIQTAEDIDQSNILIATKQAMMSALNQLHPAPDYVLIDAVHLNDYKKAPQ 194

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            A+IKGD+   +IAAASI AK  RD LM      YP YGF+++ GY T +H   +K+ GP
Sbjct: 195 EAIIKGDATVYAIAAASIYAKEYRDNLMAEYADLYPGYGFEANAGYGTKQHLDGLKKYGP 254

Query: 194 SCIHRLTFRPLRN 206
           S IHR TF P++N
Sbjct: 255 SPIHRKTFAPVKN 267


>gi|162447204|ref|YP_001620336.1| ribonuclease HII [Acholeplasma laidlawii PG-8A]
 gi|189043526|sp|A9NF30|RNH2_ACHLI RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|161985311|gb|ABX80960.1| ribonuclease HII [Acholeplasma laidlawii PG-8A]
          Length = 202

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/195 (45%), Positives = 117/195 (60%), Gaps = 4/195 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  + +K    + G+DE GRG LAGPVV AA+I +       INDSK +S KKRE L+E
Sbjct: 8   FEKALYDKGYTYICGVDEAGRGPLAGPVVAAAVIFEKGFYHEDINDSKTLSAKKRETLFE 67

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   A+ I +S  +H+ IDK NI +A   A+  A+  L++ P+ AL D   I + +P  
Sbjct: 68  LIKQHALAIGVSVVNHEVIDKINILEAARHAMEDAISKLKIKPQYALTDHMDI-KGIPYT 126

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
           +  +  GD +S+SIAAASIIAKVTRD+LM    + YP YGF  H GY T KH + +   G
Sbjct: 127 S--IKHGDQLSISIAAASIIAKVTRDKLMVDYDEVYPQYGFKDHKGYGTRKHLEALNLYG 184

Query: 193 PSCIHRLTFRPLRNL 207
            S IHR TF P+  L
Sbjct: 185 VSPIHRKTFAPVAKL 199


>gi|289434557|ref|YP_003464429.1| Ribonuclease HII [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289170801|emb|CBH27343.1| rnhB [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 261

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/181 (46%), Positives = 114/181 (62%), Gaps = 3/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG LAGPVV AA+IL  +    GINDSK++S  KRE L+E I   AI + + 
Sbjct: 73  IAGVDEVGRGPLAGPVVAAAVILPEDFSVVGINDSKQLSELKRETLFELIQQQAIAVGVG 132

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
              H  ID+ NI++AT  A+  A++ L   P   LID  ++P        ++IKGD+ S+
Sbjct: 133 IIEHDVIDEVNIYEATKLAMRKALDELNPSPDFVLID--AMPLKYTEAELSLIKGDTKSI 190

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASIIAKVTRDRLM+     YP Y F +++GY T  H   +   G   IHRL+F P+
Sbjct: 191 SIAAASIIAKVTRDRLMKDYDVAYPGYDFVNNMGYGTKNHLNGLDTIGVCPIHRLSFAPV 250

Query: 205 R 205
           +
Sbjct: 251 K 251


>gi|255534413|ref|YP_003094784.1| Ribonuclease HII [Flavobacteriaceae bacterium 3519-10]
 gi|255340609|gb|ACU06722.1| Ribonuclease HII [Flavobacteriaceae bacterium 3519-10]
          Length = 218

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/179 (41%), Positives = 112/179 (62%), Gaps = 5/179 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DEVGRG L GPVV AA+ILD   +   ++DSKK++ K R  L   I  +    +++ 
Sbjct: 26  AGCDEVGRGCLCGPVVAAAVILDEKFVQNLVDDSKKLNFKTRIYLDAYIKDNVKEYAVAE 85

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPED-LPCQAFAVIKGDSIS 143
               +ID+HNI  A++ A++ A++ LQ  P   L+DG R  P + +P Q   +IKGD+  
Sbjct: 86  LPPSHIDEHNILNASIHAMHRALDQLQTRPELILVDGNRFHPYNFIPHQC--IIKGDASI 143

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           LSIA ASI+AK  RD+LM   H ++P YG+ +++GY T +H++ +   GP+  HR +FR
Sbjct: 144 LSIACASILAKNYRDQLMIKLHDEFPHYGWKTNMGYATKEHREALNRYGPTEHHRRSFR 202


>gi|325846098|ref|ZP_08169192.1| ribonuclease HII [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481691|gb|EGC84726.1| ribonuclease HII [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 210

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/177 (46%), Positives = 111/177 (62%), Gaps = 3/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AGIDEVGRG LAGPVV  A+I+  ++   GI DSKK+S KK +ELY KI   +I  S  
Sbjct: 24  IAGIDEVGRGPLAGPVVACAVIMKKDSHIEGITDSKKLSKKKMKELYGKIIDDSISYSFG 83

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A++  IDK NI +AT  A+  A+E L+  P+  LID   I  D+  +   ++KGD    
Sbjct: 84  YANNILIDKINIKEATKLAMKDALEGLEKTPQIVLIDAERIDTDI--KQLNIVKGDLYEY 141

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +I+ ASI+AKV RD++M    K YP Y F+++ GY T KH Q I++ G   IHR TF
Sbjct: 142 AISCASILAKVRRDKIMENFSKIYPYYSFETNAGYGTKKHYQGIEKYGECPIHRRTF 198


>gi|237716674|ref|ZP_04547155.1| ribonuclease HII [Bacteroides sp. D1]
 gi|262405448|ref|ZP_06081998.1| ribonuclease HII [Bacteroides sp. 2_1_22]
 gi|294646229|ref|ZP_06723883.1| ribonuclease HII [Bacteroides ovatus SD CC 2a]
 gi|294809104|ref|ZP_06767822.1| ribonuclease HII [Bacteroides xylanisolvens SD CC 1b]
 gi|229442657|gb|EEO48448.1| ribonuclease HII [Bacteroides sp. D1]
 gi|262356323|gb|EEZ05413.1| ribonuclease HII [Bacteroides sp. 2_1_22]
 gi|292638447|gb|EFF56811.1| ribonuclease HII [Bacteroides ovatus SD CC 2a]
 gi|294443658|gb|EFG12407.1| ribonuclease HII [Bacteroides xylanisolvens SD CC 1b]
          Length = 200

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/179 (42%), Positives = 103/179 (57%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL        +NDSK++S K+R  L E I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKGFKNELLNDSKQLSEKQRYALREVIEKEAIAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
              + ID+ NI +A+  A++ AV+ L   P+  LIDG    +        V+KGD   LS
Sbjct: 73  VLPEEIDEINILRASFLAMHRAVDQLTTRPQHLLIDGNRFTKYPGIPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H+++P Y +D + GYPT KH+  I E+G +  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTFNLL 191


>gi|282854576|ref|ZP_06263911.1| ribonuclease HII [Propionibacterium acnes J139]
 gi|282582158|gb|EFB87540.1| ribonuclease HII [Propionibacterium acnes J139]
          Length = 217

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72
           E  +    + PVAG DE GRGA AGP+V AA+ILD        G+ DSK +S  KRE L+
Sbjct: 17  ERALTRAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 76

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   A+ +S         D+  + +A +  +  AV  L V P   L DG  + + L  
Sbjct: 77  NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 135

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               + KGDS+   +AAASI+AKV RDR+M     + P Y F  H GY TA HQ+ +KE 
Sbjct: 136 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 195

Query: 192 GPSCIHRLTFRPLRN 206
           GPS  HR+++  +R 
Sbjct: 196 GPSRQHRMSYANVRR 210


>gi|329964524|ref|ZP_08301578.1| ribonuclease HII [Bacteroides fluxus YIT 12057]
 gi|328524924|gb|EGF51976.1| ribonuclease HII [Bacteroides fluxus YIT 12057]
          Length = 205

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/179 (41%), Positives = 104/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++ K+R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S   ID+ NI  A+  A++ AV+ L + P+  L+DG    +        V+KGD   LS
Sbjct: 73  VSPGEIDQINILNASFLAMHRAVDQLNIRPQHLLVDGNRFKKYRDVPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H++YP Y ++ + GYPT KH+  I E+G +  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNGLHEEYPYYDWNHNKGYPTKKHRAAIAERGTTPYHRMTFNLL 191


>gi|121533787|ref|ZP_01665614.1| Ribonuclease H [Thermosinus carboxydivorans Nor1]
 gi|121307778|gb|EAX48693.1| Ribonuclease H [Thermosinus carboxydivorans Nor1]
          Length = 265

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/197 (43%), Positives = 118/197 (59%), Gaps = 10/197 (5%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E++  E+ +  +AG+DE GRG LAGPVVVAA+IL        +NDSKK+S  +R  LYEK
Sbjct: 69  ESVFYEQGLDLIAGVDEAGRGPLAGPVVVAAVILPKRQHLPMLNDSKKLSPHQRSLLYEK 128

Query: 75  ITSSAIISISSASHQYI-----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           I  +A+    + +H  I     D  NI++ATL  +Y  +ENL   P+ ALID   +   +
Sbjct: 129 IIGTAV----AVNHVVIPVCQIDSMNIYQATLQGMYRVLENLSPKPQVALIDAMPL-RKI 183

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                ++I GD++S SIAAASI+AKV RDR M      YP YGF  H GY T +H   ++
Sbjct: 184 VLPHMSIINGDALSASIAAASIVAKVVRDRYMDEMDVLYPGYGFAKHKGYATPEHLAALR 243

Query: 190 EKGPSCIHRLTFRPLRN 206
             GP  IHR +F P+++
Sbjct: 244 RLGPCPIHRRSFEPIKS 260


>gi|314981831|gb|EFT25924.1| ribonuclease HII [Propionibacterium acnes HL110PA3]
 gi|315090696|gb|EFT62672.1| ribonuclease HII [Propionibacterium acnes HL110PA4]
          Length = 204

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72
           E  +    + PVAG DE GRGA AGP+V AA+ILD        G+ DSK +S  KRE L+
Sbjct: 4   ERALTRAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 63

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   A+ +S         D+  + +A +  +  AV  L V P   L DG  + + L  
Sbjct: 64  NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 122

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               + KGDS+   +AAASI+AKV RDR+M     + P Y F  H GY TA HQ+ +KE 
Sbjct: 123 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 182

Query: 192 GPSCIHRLTFRPLRN 206
           GPS  HR+++  +R 
Sbjct: 183 GPSRQHRMSYANVRR 197


>gi|153809167|ref|ZP_01961835.1| hypothetical protein BACCAC_03477 [Bacteroides caccae ATCC 43185]
 gi|149128143|gb|EDM19363.1| hypothetical protein BACCAC_03477 [Bacteroides caccae ATCC 43185]
          Length = 200

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/179 (43%), Positives = 103/179 (57%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++ K+R  L E I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEREAIAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + ID+ NI +A+  A++ AV+ L   P   LIDG    +        VIKGD   LS
Sbjct: 73  VSPEEIDEINILRASFLAMHRAVDQLSTRPEHLLIDGNRFNKYPGIPHTTVIKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H++YP Y ++ + GYPT KH+  I E G +  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPYYDWNRNKGYPTKKHRAAIAEHGTTPYHRMTFNLL 191


>gi|297564923|ref|YP_003683895.1| Ribonuclease H [Meiothermus silvanus DSM 9946]
 gi|296849372|gb|ADH62387.1| Ribonuclease H [Meiothermus silvanus DSM 9946]
          Length = 216

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/196 (40%), Positives = 112/196 (57%), Gaps = 10/196 (5%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           E++ W     VAG+DE GRGA AGPVVVAA+IL     PF   DSK +S ++RE L  ++
Sbjct: 11  ERDWWEAGLRVAGVDEAGRGAWAGPVVVAAVILPRGEHPF--RDSKTLSARQREALEARV 68

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
            + A+   +  A+   I++  I KAT  A   A+E L V+P + + D   +  +    A 
Sbjct: 69  KAVALGWGVGLAAVDEIERLGILKATHRAAQRALECLAVLPDALITDYLRLEREWRGPAS 128

Query: 135 AVI---KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
            +    K D  S ++AAASI+AKV RDR M     +YP YGF +H GY T  H++ +   
Sbjct: 129 LLRCPPKADRDSPTVAAASILAKVARDRHMLELEAQYPGYGFATHKGYGTTLHRENLIRL 188

Query: 192 GPSCIHRLTFRPLRNL 207
           GPS +HR TF P+R L
Sbjct: 189 GPSPVHRKTFAPVRCL 204


>gi|313819655|gb|EFS57369.1| ribonuclease HII [Propionibacterium acnes HL046PA2]
          Length = 213

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72
           E  +    + PVAG DE GRGA AGP+V AA+ILD        G+ DSK +S  KRE L+
Sbjct: 13  ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 72

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   A+ +S         D+  + +A +  +  AV  L V P   L DG  + + L  
Sbjct: 73  NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 131

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               + KGDS+   +AAASI+AKV RDR+M     + P Y F  H GY TA HQ+ +KE 
Sbjct: 132 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 191

Query: 192 GPSCIHRLTFRPLRN 206
           GPS  HR+++  +R 
Sbjct: 192 GPSRQHRMSYANVRR 206


>gi|314923942|gb|EFS87773.1| ribonuclease HII [Propionibacterium acnes HL001PA1]
 gi|314966113|gb|EFT10212.1| ribonuclease HII [Propionibacterium acnes HL082PA2]
 gi|315094908|gb|EFT66884.1| ribonuclease HII [Propionibacterium acnes HL060PA1]
 gi|315104180|gb|EFT76156.1| ribonuclease HII [Propionibacterium acnes HL050PA2]
 gi|327328010|gb|EGE69779.1| ribonuclease HII [Propionibacterium acnes HL103PA1]
          Length = 204

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72
           E  +    + PVAG DE GRGA AGP+V AA+ILD        G+ DSK +S  KRE L+
Sbjct: 4   ERALTRAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 63

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   A+ +S         D+  + +A +  +  AV  L V P   L DG  + + L  
Sbjct: 64  NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 122

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               + KGDS+   +AAASI+AKV RDR+M     + P Y F  H GY TA HQ+ +KE 
Sbjct: 123 PDLGMWKGDSVCACVAAASIVAKVARDRIMIALDAEIPGYDFAVHKGYATALHQRRLKEL 182

Query: 192 GPSCIHRLTFRPLRN 206
           GPS  HR+++  +R 
Sbjct: 183 GPSRQHRMSYANVRR 197


>gi|289427787|ref|ZP_06429498.1| ribonuclease HII [Propionibacterium acnes J165]
 gi|289159051|gb|EFD07244.1| ribonuclease HII [Propionibacterium acnes J165]
          Length = 217

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72
           E  +    + PVAG DE GRGA AGP+V AA+ILD        G+ DSK +S  KRE L+
Sbjct: 17  ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 76

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   A+ +S         D+  + +A +  +  AV  L V P   L DG  + + L  
Sbjct: 77  NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 135

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               + KGDS+   +AAASI+AKV RDR+M     + P Y F  H GY TA HQ+ +KE 
Sbjct: 136 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 195

Query: 192 GPSCIHRLTFRPLRN 206
           GPS  HR+++  +R 
Sbjct: 196 GPSRQHRMSYANVRR 210


>gi|254797053|ref|YP_003081891.1| ribonuclease HII [Neorickettsia risticii str. Illinois]
 gi|254590300|gb|ACT69662.1| ribonuclease HII [Neorickettsia risticii str. Illinois]
          Length = 195

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/185 (42%), Positives = 108/185 (58%), Gaps = 6/185 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           +AG+DEVGRG LAGPVV  A+IL  N  IP    DSK +S   R   YEKI S++  +I 
Sbjct: 11  IAGVDEVGRGCLAGPVVACAVILTENLAIP---GDSKVLSPAARLSWYEKIMSNSYNAIG 67

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC--QAFAVIKGDSI 142
            ++ + I+  NI  ATL A+  A+E L V+P + LIDGR I  +     +  +V+ GD I
Sbjct: 68  MSTVKEIETMNILNATLLAMERALERLPVVPTTVLIDGRDIINNAAKYKEVKSVVSGDKI 127

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I AASI+AKVTRDR M      YP Y +  + GY T +H + + + G +  HR  F 
Sbjct: 128 YEEIKAASIVAKVTRDRWMEELDLTYPYYRWRFNKGYGTKEHLEALAKYGVTDHHRRKFA 187

Query: 203 PLRNL 207
           P++ +
Sbjct: 188 PVKRM 192


>gi|315917438|ref|ZP_07913678.1| ribonuclease HII [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691313|gb|EFS28148.1| ribonuclease HII [Fusobacterium gonidiaformans ATCC 25563]
          Length = 211

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/182 (42%), Positives = 108/182 (59%), Gaps = 6/182 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84
           + G+DE GRG LAGPVV AA +L   +     I DSKK++ KKRE L+  I     + I 
Sbjct: 21  IVGVDEAGRGPLAGPVVAAAALLKQYDRSLEPIQDSKKLTEKKREALFSVIPQFFYVGIG 80

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQ----VIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            AS + I+K+NI  AT  A+  A+ NL+    +   + L+DG     +   +  A++KGD
Sbjct: 81  QASVEEIEKYNILNATFLAMRRALGNLEEQVEIQDATILVDGNFTIRECERKQEAIVKGD 140

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHRL 199
           + SLSIAAASI+AKVTRD  +    ++YPDY F+ H GY T  H++ I   GP   +HR 
Sbjct: 141 AKSLSIAAASIMAKVTRDHELVELAEQYPDYFFEKHKGYGTKVHREKILSLGPIPGVHRD 200

Query: 200 TF 201
           +F
Sbjct: 201 SF 202


>gi|257466281|ref|ZP_05630592.1| ribonuclease HII [Fusobacterium gonidiaformans ATCC 25563]
          Length = 210

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/182 (42%), Positives = 108/182 (59%), Gaps = 6/182 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84
           + G+DE GRG LAGPVV AA +L   +     I DSKK++ KKRE L+  I     + I 
Sbjct: 20  IVGVDEAGRGPLAGPVVAAAALLKQYDRSLEPIQDSKKLTEKKREALFSVIPQFFYVGIG 79

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQ----VIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            AS + I+K+NI  AT  A+  A+ NL+    +   + L+DG     +   +  A++KGD
Sbjct: 80  QASVEEIEKYNILNATFLAMRRALGNLEEQVEIQDATILVDGNFTIRECERKQEAIVKGD 139

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHRL 199
           + SLSIAAASI+AKVTRD  +    ++YPDY F+ H GY T  H++ I   GP   +HR 
Sbjct: 140 AKSLSIAAASIMAKVTRDHELVELAEQYPDYFFEKHKGYGTKVHREKILSLGPIPGVHRD 199

Query: 200 TF 201
           +F
Sbjct: 200 SF 201


>gi|282881109|ref|ZP_06289796.1| ribonuclease HII [Prevotella timonensis CRIS 5C-B1]
 gi|281304913|gb|EFA96986.1| ribonuclease HII [Prevotella timonensis CRIS 5C-B1]
          Length = 200

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/186 (39%), Positives = 116/186 (62%), Gaps = 5/186 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG +  AA+IL  +     +NDSK+++ KKR EL E I  +A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSIFAAAVILPSDYDNHVLNDSKQLTRKKRNELREVIMQAAVAWAVGE 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIP-EDLPCQAFAVIKGDSIS 143
            S Q ID+ NI +A+  A++ A++ L+V P++ ++DG R  P  D+P     ++KGD+  
Sbjct: 73  VSPQEIDEINILRASFLAMHRALDQLKVRPQAIIVDGNRFTPYHDIPYTT--IVKGDAKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SIAAASI+AK  RD  M    ++YP Y ++S++GYPT +H+  I++ G +  HR ++  
Sbjct: 131 QSIAAASILAKTFRDDYMDRLAEEYPQYHWESNMGYPTREHRAAIQQYGVTPYHRRSYNL 190

Query: 204 LRNLSV 209
           L N  +
Sbjct: 191 LGNTEL 196


>gi|237756157|ref|ZP_04584727.1| ribonuclease HII [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691683|gb|EEP60721.1| ribonuclease HII [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 197

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/177 (44%), Positives = 110/177 (62%), Gaps = 3/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDE GRG LAGP+V+A++I   +  PF  +DSK +S K+RE L+EKI   A  I+I+
Sbjct: 16  IVGIDEAGRGPLAGPLVIASVIFPKHQKPFIHSDSKGLSEKEREYLFEKIHDYAEEINIT 75

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
              +  IDK  I  A    + + +++L+     AL+D   + E +      +IKGD IS 
Sbjct: 76  IIENTEIDKLGISNAAKIYMENNLKSLKSKWDIALVDFVKLDESI--NHLPLIKGDEISH 133

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +IAAASIIAKV RDR+M    +KYP++ FD H GY T +H Q IK+ G + IHR +F
Sbjct: 134 TIAAASIIAKVVRDRIMIEYKEKYPNFSFDKHKGYATKQHYQEIKKFGITPIHRRSF 190


>gi|33519750|ref|NP_878582.1| ribonuclease HII [Candidatus Blochmannia floridanus]
 gi|39932315|sp|Q7VRD2|RNH2_BLOFL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|33504095|emb|CAD83356.1| ribonuclease HII [Candidatus Blochmannia floridanus]
          Length = 205

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/189 (41%), Positives = 113/189 (59%), Gaps = 9/189 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81
           VAG+DEVG G+L G VV +A+++   D   +  G+ DSK +S+KKR      I   ++  
Sbjct: 15  VAGVDEVGCGSLVGAVVASAVLMLYPDQEQLFSGLIDSKALSNKKRLRFCNYIQKYSLHW 74

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR---SIPEDLPCQAFAVIK 138
           SI   +   ID+ NI +A L +I  A+ NL +IP   LIDG+   S+ +++  Q F  +K
Sbjct: 75  SIGMVNVTEIDQLNIFQARLLSIKRAICNLSMIPDLVLIDGKHAPSLNKNILYQCF--VK 132

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GDS    I+AASIIAKVTRD+ M + H +YP YGF  + GY T  H + +   GP+  HR
Sbjct: 133 GDSRIPVISAASIIAKVTRDQAMMMLHTQYPKYGFHRNKGYATVFHLKQLDLYGPTIYHR 192

Query: 199 LTFRPLRNL 207
            TF P++ +
Sbjct: 193 KTFAPVKYM 201


>gi|218264672|ref|ZP_03478435.1| hypothetical protein PRABACTJOHN_04144 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221859|gb|EEC94509.1| hypothetical protein PRABACTJOHN_04144 [Parabacteroides johnsonii
           DSM 18315]
          Length = 199

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/176 (43%), Positives = 102/176 (57%), Gaps = 1/176 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL P+     +NDSK++S KKR  L   I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGPVYAAAVILPPDFHNEDLNDSKQLSEKKRYALRPIIEQEAIAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + ID+ NI KA+  A++ A++ L+V P   LIDG         +   V+KGD   LS
Sbjct: 73  VTPEEIDRINILKASFLAMHRAIDGLKVKPEHLLIDGNRFTPYPGVKHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           IAAASI+AK  RD  M     +YP Y +  + GYPT  H++ I+E G +  HR TF
Sbjct: 133 IAAASILAKTYRDDYMNSLDLEYPAYHWKENKGYPTKAHREAIRECGITPYHRKTF 188


>gi|116512136|ref|YP_809352.1| ribonuclease HII [Lactococcus lactis subsp. cremoris SK11]
 gi|123025377|sp|Q02YP2|RNH2_LACLS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|116107790|gb|ABJ72930.1| RNase HII [Lactococcus lactis subsp. cremoris SK11]
          Length = 258

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/197 (42%), Positives = 119/197 (60%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            E E  +  + +  +AGIDEVGRGALAGPVV AA+IL  N    G+NDSKK+   K   +
Sbjct: 59  LEFEKELYSQEIELIAGIDEVGRGALAGPVVTAAVILPKNCKIRGLNDSKKVPKSKHHAI 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
             +I   A+ I I     + ID+ NI++AT  A+  AV  L + P   LID   +  DLP
Sbjct: 119 LSEIQEKALAIGIGIVDAEKIDEVNIYEATKIAMIQAVSKLSLKPEHLLIDAMVL--DLP 176

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +I GD+ S SIAAASI+AKVTRD +M+    ++P+Y F+ + GY TAKH   + +
Sbjct: 177 IAQTKIIHGDARSASIAAASIVAKVTRDEMMKDFALEFPEYDFEHNAGYGTAKHLAALTK 236

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR ++ P++++
Sbjct: 237 YGITRIHRKSYEPIKSM 253


>gi|50842913|ref|YP_056140.1| ribonuclease HII [Propionibacterium acnes KPA171202]
 gi|81611490|sp|Q6A7T3|RNH2_PROAC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|50840515|gb|AAT83182.1| ribonuclease HII [Propionibacterium acnes KPA171202]
 gi|313763669|gb|EFS35033.1| ribonuclease HII [Propionibacterium acnes HL013PA1]
 gi|313794063|gb|EFS42087.1| ribonuclease HII [Propionibacterium acnes HL110PA1]
 gi|313801450|gb|EFS42701.1| ribonuclease HII [Propionibacterium acnes HL110PA2]
 gi|313807870|gb|EFS46351.1| ribonuclease HII [Propionibacterium acnes HL087PA2]
 gi|313813532|gb|EFS51246.1| ribonuclease HII [Propionibacterium acnes HL025PA1]
 gi|313816846|gb|EFS54560.1| ribonuclease HII [Propionibacterium acnes HL059PA1]
 gi|313822239|gb|EFS59953.1| ribonuclease HII [Propionibacterium acnes HL036PA1]
 gi|313823528|gb|EFS61242.1| ribonuclease HII [Propionibacterium acnes HL036PA2]
 gi|313825855|gb|EFS63569.1| ribonuclease HII [Propionibacterium acnes HL063PA1]
 gi|313829535|gb|EFS67249.1| ribonuclease HII [Propionibacterium acnes HL063PA2]
 gi|313839830|gb|EFS77544.1| ribonuclease HII [Propionibacterium acnes HL086PA1]
 gi|314914671|gb|EFS78502.1| ribonuclease HII [Propionibacterium acnes HL005PA4]
 gi|314919216|gb|EFS83047.1| ribonuclease HII [Propionibacterium acnes HL050PA1]
 gi|314920874|gb|EFS84705.1| ribonuclease HII [Propionibacterium acnes HL050PA3]
 gi|314924571|gb|EFS88402.1| ribonuclease HII [Propionibacterium acnes HL036PA3]
 gi|314930442|gb|EFS94273.1| ribonuclease HII [Propionibacterium acnes HL067PA1]
 gi|314954505|gb|EFS98911.1| ribonuclease HII [Propionibacterium acnes HL027PA1]
 gi|314957375|gb|EFT01478.1| ribonuclease HII [Propionibacterium acnes HL002PA1]
 gi|314962003|gb|EFT06104.1| ribonuclease HII [Propionibacterium acnes HL002PA2]
 gi|314963583|gb|EFT07683.1| ribonuclease HII [Propionibacterium acnes HL082PA1]
 gi|314968585|gb|EFT12683.1| ribonuclease HII [Propionibacterium acnes HL037PA1]
 gi|314978796|gb|EFT22890.1| ribonuclease HII [Propionibacterium acnes HL072PA2]
 gi|314986438|gb|EFT30530.1| ribonuclease HII [Propionibacterium acnes HL005PA2]
 gi|314990798|gb|EFT34889.1| ribonuclease HII [Propionibacterium acnes HL005PA3]
 gi|315079437|gb|EFT51430.1| ribonuclease HII [Propionibacterium acnes HL053PA2]
 gi|315083537|gb|EFT55513.1| ribonuclease HII [Propionibacterium acnes HL027PA2]
 gi|315087217|gb|EFT59193.1| ribonuclease HII [Propionibacterium acnes HL002PA3]
 gi|315089391|gb|EFT61367.1| ribonuclease HII [Propionibacterium acnes HL072PA1]
 gi|315099296|gb|EFT71272.1| ribonuclease HII [Propionibacterium acnes HL059PA2]
 gi|315100529|gb|EFT72505.1| ribonuclease HII [Propionibacterium acnes HL046PA1]
 gi|315106699|gb|EFT78675.1| ribonuclease HII [Propionibacterium acnes HL030PA1]
 gi|315108924|gb|EFT80900.1| ribonuclease HII [Propionibacterium acnes HL030PA2]
 gi|327329811|gb|EGE71567.1| ribonuclease HII [Propionibacterium acnes HL096PA3]
 gi|327334326|gb|EGE76040.1| ribonuclease HII [Propionibacterium acnes HL097PA1]
 gi|327446256|gb|EGE92910.1| ribonuclease HII [Propionibacterium acnes HL013PA2]
 gi|327451918|gb|EGE98572.1| ribonuclease HII [Propionibacterium acnes HL092PA1]
 gi|327455047|gb|EGF01702.1| ribonuclease HII [Propionibacterium acnes HL087PA3]
 gi|327457665|gb|EGF04320.1| ribonuclease HII [Propionibacterium acnes HL083PA2]
 gi|328755121|gb|EGF68737.1| ribonuclease HII [Propionibacterium acnes HL087PA1]
 gi|328758100|gb|EGF71716.1| ribonuclease HII [Propionibacterium acnes HL025PA2]
 gi|332675850|gb|AEE72666.1| ribonuclease HII [Propionibacterium acnes 266]
          Length = 204

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72
           E  +    + PVAG DE GRGA AGP+V AA+ILD        G+ DSK +S  KRE L+
Sbjct: 4   ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 63

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   A+ +S         D+  + +A +  +  AV  L V P   L DG  + + L  
Sbjct: 64  NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 122

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               + KGDS+   +AAASI+AKV RDR+M     + P Y F  H GY TA HQ+ +KE 
Sbjct: 123 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 182

Query: 192 GPSCIHRLTFRPLRN 206
           GPS  HR+++  +R 
Sbjct: 183 GPSRQHRMSYANVRR 197


>gi|296284404|ref|ZP_06862402.1| ribonuclease HII [Citromicrobium bathyomarinum JL354]
          Length = 212

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/187 (39%), Positives = 107/187 (57%), Gaps = 9/187 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           V G+DE GRG LAGPVV +A+ L     P G++DSKK+   KR  L E++       ++ 
Sbjct: 20  VVGVDEAGRGPLAGPVVASAVALCKPR-PAGLDDSKKLGALKRSALDEQVRRRCAWGVAV 78

Query: 86  ASHQYIDKHNIHKATLDAIYHAV----ENLQVIPRSALIDGRSIP----EDLPCQAFAVI 137
              + ID+ NI  AT+ A+  AV    + +   P   L+DG   P    E     A A++
Sbjct: 79  VEPEEIDRLNIFGATMLAMTLAVTRVAQAMGRAPDMVLVDGNLTPSGRCEGWCWPARAIV 138

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
            GD+   +I+AASI+AK  RDRLM  A ++YP YG++ + GY TA+H   ++E GP  +H
Sbjct: 139 GGDAKEPAISAASIVAKEWRDRLMIAAAREYPHYGWERNKGYGTAEHLSALREHGPCALH 198

Query: 198 RLTFRPL 204
           R +F P+
Sbjct: 199 RRSFAPV 205


>gi|188580997|ref|YP_001924442.1| ribonuclease H [Methylobacterium populi BJ001]
 gi|179344495|gb|ACB79907.1| Ribonuclease H [Methylobacterium populi BJ001]
          Length = 232

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/182 (42%), Positives = 108/182 (59%), Gaps = 9/182 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYEKITSSAII 81
           V G DEVGRGAL GPV+VAA+  DP   P  I    +DSK++    RE L   I + A +
Sbjct: 35  VIGCDEVGRGALCGPVMVAAVWFDPLAFPAEILARLDDSKRLDRATREALTPLIRAHARV 94

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPEDL-PCQAFAVIKG 139
           S+++ S   +D+ N+  ATLDA+  AV  L  +  + L+DGR  IP  + PC+A  V+ G
Sbjct: 95  SLAAGSRALVDRVNVRGATLDAMRRAVAGLG-LDAAVLVDGRDGIPGLVQPCRA--VVGG 151

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D +   IAAASI+AK  RD LMR    ++P Y ++ + GY TA H   +  +G S  HR+
Sbjct: 152 DRLVPQIAAASIVAKTCRDDLMRRLALRHPAYAWERNAGYGTAAHLAGLTAQGRSPHHRV 211

Query: 200 TF 201
           +F
Sbjct: 212 SF 213


>gi|242277680|ref|YP_002989809.1| ribonuclease H [Desulfovibrio salexigens DSM 2638]
 gi|242120574|gb|ACS78270.1| Ribonuclease H [Desulfovibrio salexigens DSM 2638]
          Length = 218

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/185 (41%), Positives = 112/185 (60%), Gaps = 9/185 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83
            AGIDE GRG LAGPVV  A+IL +  ++P G+ DSKK+    R+ L  +I   A+  ++
Sbjct: 16  TAGIDEAGRGCLAGPVVAGAVILPEEYDLP-GLTDSKKLDEAARDRLAVEIKKQAVCWAL 74

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPED-----LPCQAFAVI 137
             +  Q +D+ NI +AT  A+  +V +L+V P+  ++DG ++IP          +  AV+
Sbjct: 75  GVSRAQVVDQINILQATFRAMGRSVLHLKVKPQMLMVDGNKTIPAPHLNGVAGFRQEAVV 134

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGD    +I+AASI+AK  RD+LM    K+Y  YGF+ H GY T  H   +KE GP  +H
Sbjct: 135 KGDLKIPAISAASILAKTFRDKLMVQLAKRYAAYGFEIHKGYGTKVHLDALKEHGPCAVH 194

Query: 198 RLTFR 202
           R+TF+
Sbjct: 195 RMTFK 199


>gi|325673470|ref|ZP_08153161.1| ribonuclease HII [Rhodococcus equi ATCC 33707]
 gi|325555491|gb|EGD25162.1| ribonuclease HII [Rhodococcus equi ATCC 33707]
          Length = 212

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 110/191 (57%), Gaps = 4/191 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREEL 71
           +E+ +    + PVAG+DE GRGA AGP+VVAA +L   P+     ++DSKK++ K R+EL
Sbjct: 1   MESALVRSGLGPVAGVDEAGRGACAGPLVVAACVLGSKPHAALARLDDSKKLTEKVRDEL 60

Query: 72  YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+  S+       +D+  +H A ++ +  AV  L V P   L DG  +P  LP
Sbjct: 61  FPVIKRLAVAWSVVEIPAAEVDRIGVHVANIEGMRRAVAGLTVAPGYVLTDGFRVP-GLP 119

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD+ +  IAAAS++AKV+RDR M     + P YGF  H GY TA H   + E
Sbjct: 120 APSLPVIGGDASAACIAAASVLAKVSRDRTMVALDDELPGYGFAGHKGYSTAVHTAALNE 179

Query: 191 KGPSCIHRLTF 201
            GP   HR+++
Sbjct: 180 LGPCREHRMSY 190


>gi|256847171|ref|ZP_05552617.1| ribonuclease HII [Lactobacillus coleohominis 101-4-CHN]
 gi|256715835|gb|EEU30810.1| ribonuclease HII [Lactobacillus coleohominis 101-4-CHN]
          Length = 259

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/191 (42%), Positives = 117/191 (61%), Gaps = 8/191 (4%)

Query: 20  EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E+ +W      VAG+DEVGRG LAGPVV  A+ILD       + DSK +S ++RE LY +
Sbjct: 64  ERALWQAGNQYVAGMDEVGRGPLAGPVVTCAVILDDRFDLVEVTDSKMLSRRERERLYLR 123

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   A+ +SI+  S   ID+ NI++AT DA+  AV  L+  P   ++D  ++P  L    
Sbjct: 124 IVDEAVEVSIAVNSPAVIDQLNIYRATQDAMIRAVHELRHQPSHLIVD--AVPLSLSIPQ 181

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGD  S+S+AAASI+AK  RD LM    + YP Y F++++GY T +H   +++ G 
Sbjct: 182 TTLIKGDQKSISVAAASIVAKEYRDHLMADYARLYPGYDFENNMGYGTKQHLAGLEKHGV 241

Query: 194 SCIHRLTFRPL 204
           + IHR TF P+
Sbjct: 242 TPIHRRTFAPV 252


>gi|288925319|ref|ZP_06419253.1| ribonuclease HII [Prevotella buccae D17]
 gi|315606714|ref|ZP_07881724.1| ribonuclease HII [Prevotella buccae ATCC 33574]
 gi|288337790|gb|EFC76142.1| ribonuclease HII [Prevotella buccae D17]
 gi|315251569|gb|EFU31548.1| ribonuclease HII [Prevotella buccae ATCC 33574]
          Length = 201

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/183 (43%), Positives = 114/183 (62%), Gaps = 9/183 (4%)

Query: 27  AGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
           AG DE GRG LAG V  AA+IL  D NN    +NDSK++SHK+R EL E+I   A+  ++
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPRDYNNP--ALNDSKQLSHKRRNELREQIMHDAVAWAV 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIP-EDLPCQAFAVIKGDS 141
              + + ID+ NI KA+  A++ A++ L V P + ++DG R +P  DLP  A  ++KGD 
Sbjct: 71  GVVTPEEIDRINILKASFLAMHRALDALNVRPEAVIVDGNRFVPYGDLPYTA--IVKGDG 128

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
              SIAAASI+AK  RD  M    ++YP Y ++ ++GYPT KH++ I+  G    HR ++
Sbjct: 129 KYQSIAAASILAKTFRDDYMCDLARRYPYYDWEHNMGYPTKKHREGIRLHGICPYHRKSY 188

Query: 202 RPL 204
             L
Sbjct: 189 NLL 191


>gi|329954154|ref|ZP_08295249.1| ribonuclease HII [Bacteroides clarus YIT 12056]
 gi|328528131|gb|EGF55111.1| ribonuclease HII [Bacteroides clarus YIT 12056]
          Length = 199

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/181 (42%), Positives = 108/181 (59%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++ K+R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFENDLLNDSKQLTEKQRYALREVIEKEALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143
            S + IDK NI  A+  A++ AV+ LQ+ P+  LIDG    +  D+P     V+KGD   
Sbjct: 73  VSPKEIDKINILNASFLAMHRAVDRLQLRPQHLLIDGNRFRKYGDIPHTT--VVKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAASI+AK  RD  M   H+++P Y ++ + GYPT KH+  I  +G +  HR+TF  
Sbjct: 131 LSIAAASILAKTYRDDYMNRLHEEFPYYDWNHNKGYPTKKHRAAIAGRGTTPYHRMTFNL 190

Query: 204 L 204
           L
Sbjct: 191 L 191


>gi|189459842|ref|ZP_03008627.1| hypothetical protein BACCOP_00472 [Bacteroides coprocola DSM 17136]
 gi|189433452|gb|EDV02437.1| hypothetical protein BACCOP_00472 [Bacteroides coprocola DSM 17136]
          Length = 200

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/181 (43%), Positives = 105/181 (58%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSKK++  +R  L E I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPSDYENQQLNDSKKLTEHQRYALREVIERDAIAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143
            + Q IDK NI  A+  A++ A++ L+V P+  LIDG      EDLP     V+KGD   
Sbjct: 73  VTPQEIDKINILNASFLAMHRAIDQLKVRPQHLLIDGNRFNKYEDLPHTT--VVKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAASI+AK  RD  M    ++YP Y +  + GYPT KH++ I   G +  HR+T+  
Sbjct: 131 LSIAAASILAKTYRDDYMNRLAEEYPLYDWQKNKGYPTKKHREAIARYGTTPYHRMTYNL 190

Query: 204 L 204
           L
Sbjct: 191 L 191


>gi|209545123|ref|YP_002277352.1| ribonuclease HII [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532800|gb|ACI52737.1| Ribonuclease H [Gluconacetobacter diazotrophicus PAl 5]
          Length = 224

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/189 (41%), Positives = 112/189 (59%), Gaps = 6/189 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISHKKREELYEKITSS--AI 80
           VAG+DEVGRG LAGPVV AA++ D   P  +   ++DSKK++   R   Y  + ++    
Sbjct: 14  VAGVDEVGRGPLAGPVVAAAVMFDSGVPRRLATQLDDSKKLTEAARLRAYAALHAARGVH 73

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
           I++++AS   I + NI +A   A+  AV  L   P   L+DG + P D  C A  V+ GD
Sbjct: 74  IAVAAASVSEIARLNILRAAFLAMRRAVARLPHQPDMVLVDGNAAP-DFGCPAQCVVGGD 132

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
             SLSIAAASI+AKV RDRLM     ++P YG++ + GY TA+H+  +   G +  HR  
Sbjct: 133 GESLSIAAASIVAKVVRDRLMARLSCRWPGYGWERNAGYGTAEHRAALCRAGTTPHHREA 192

Query: 201 FRPLRNLSV 209
           F  +R L++
Sbjct: 193 FGLVRQLTL 201


>gi|303327966|ref|ZP_07358405.1| ribonuclease HII [Desulfovibrio sp. 3_1_syn3]
 gi|302861792|gb|EFL84727.1| ribonuclease HII [Desulfovibrio sp. 3_1_syn3]
          Length = 230

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/192 (40%), Positives = 103/192 (53%), Gaps = 14/192 (7%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
           PVAGIDE GRG LAGPVV AA+IL       G+ DSK +S K R+ L  +I   A+   +
Sbjct: 24  PVAGIDEAGRGCLAGPVVAAAVILPAVYELPGLTDSKALSAKARDILAPRIRECALAWGL 83

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF--------- 134
                + I++ NI +AT +A+  AV  L++ P   LIDG  +  D     F         
Sbjct: 84  GVVWPRRIERINILQATFEAMSRAVGVLRLTPGRLLIDGNKVLPDAVLTLFWRTGHTAPP 143

Query: 135 ----AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               AV+ GD     I+AASI+AK  RDRLM    +++P YG + H GY T  H   ++ 
Sbjct: 144 PLQQAVVGGDKSEDVISAASILAKTFRDRLMLHLGRRWPGYGLEEHKGYGTKAHYAALRR 203

Query: 191 KGPSCIHRLTFR 202
            GP   HRLTFR
Sbjct: 204 LGPCPQHRLTFR 215


>gi|212695498|ref|ZP_03303626.1| hypothetical protein ANHYDRO_00014 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677498|gb|EEB37105.1| hypothetical protein ANHYDRO_00014 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 210

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/177 (45%), Positives = 111/177 (62%), Gaps = 3/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AGIDEVGRG LAGPVV  A+++  ++   G+ DSKK+S KK +ELY KI   +I  S  
Sbjct: 24  IAGIDEVGRGPLAGPVVACAVVMKKDSHIEGVTDSKKLSKKKMKELYGKIIDDSISYSFG 83

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A++  IDK NI +AT  A+  A+E L+  P+  LID   I  D+  +   ++KGD    
Sbjct: 84  YANNVLIDKINIKEATKLAMKDALERLEKTPQIVLIDAERIDTDI--KQLNIVKGDLYEY 141

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +I+ ASI+AKV RD++M    K YP Y F+++ GY T KH Q I++ G   IHR TF
Sbjct: 142 AISCASILAKVRRDKIMENFSKIYPYYSFETNAGYGTKKHYQGIEKYGECPIHRKTF 198


>gi|312139224|ref|YP_004006560.1| ribonuclease hii rnhb [Rhodococcus equi 103S]
 gi|311888563|emb|CBH47875.1| ribonuclease HII RnhB [Rhodococcus equi 103S]
          Length = 230

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 110/191 (57%), Gaps = 4/191 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREEL 71
           +E+ +    + PVAG+DE GRGA AGP+VVAA +L   P+     ++DSKK++ K R+EL
Sbjct: 19  MESALVRSGLGPVAGVDEAGRGACAGPLVVAACVLGSKPHAALARLDDSKKLTEKVRDEL 78

Query: 72  YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+  S+       +D+  +H A ++ +  AV  L V P   L DG  +P  LP
Sbjct: 79  FPVIKRLALAWSVVEIPAAEVDRIGVHVANIEGMRRAVAGLTVAPGYVLTDGFRVP-GLP 137

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD+ +  IAAAS++AKV+RDR M     + P YGF  H GY TA H   + E
Sbjct: 138 APSLPVIGGDASAACIAAASVLAKVSRDRTMVALDDELPGYGFAGHKGYSTAVHTAALNE 197

Query: 191 KGPSCIHRLTF 201
            GP   HR+++
Sbjct: 198 LGPCREHRMSY 208


>gi|315185664|gb|EFU19432.1| RNase HII [Spirochaeta thermophila DSM 6578]
          Length = 193

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/183 (43%), Positives = 106/183 (57%), Gaps = 8/183 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           V GIDEVGRG LAGPVV AA++L P     G+ DSKK+S ++RE L+  I  +A      
Sbjct: 4   VCGIDEVGRGPLAGPVVAAAVVLTPGTSLPGLKDSKKLSPEERERLFPLIQEAAAAVGVG 63

Query: 86  ASHQY-IDKHNIHKATLDAIYHAVENL------QVIPRSALIDGRSIPEDLPCQAFAVIK 138
            +  + +D+ NIH ATL A+  A E L       ++P   +IDGR  P  +   A AV+K
Sbjct: 64  WAWPHEVDRLNIHNATLKAMERAYEMLIQKLSPSLVPTEVVIDGRHAPPSI-THARAVVK 122

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
            D+    + AASI+AKV RD  M+I H+  P+Y F  H GYPT  H++ I   G   IHR
Sbjct: 123 ADTFVPEVMAASIVAKVFRDEWMKIYHRFLPEYTFSQHKGYPTRLHRERILTIGSCPIHR 182

Query: 199 LTF 201
            TF
Sbjct: 183 RTF 185


>gi|940885|gb|AAC44577.1| RnhB [Vibrio cholerae C6706]
          Length = 162

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/157 (45%), Positives = 98/157 (62%), Gaps = 2/157 (1%)

Query: 50  PNNIPFGINDSKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAV 108
           PN    G+NDSKK+S KKR  L+ +I   A+  ++   S Q ID+ NI +AT+ A+  AV
Sbjct: 1   PNRPIMGLNDSKKLSEKKRLALFPEIQVKALAWAVGRCSPQEIDELNIFQATMVAMQRAV 60

Query: 109 ENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
             L++ P   LIDG  IP+ LP +A AV+KGD     I+AASIIAKV RD+ M    K+Y
Sbjct: 61  AGLRIQPDLVLIDGNKIPK-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQY 119

Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           P +GF +H GYPTA H   I++ G    HR +F P++
Sbjct: 120 PQFGFANHKGYPTAAHFAAIEQHGVIEQHRKSFGPVK 156


>gi|326791381|ref|YP_004309202.1| ribonuclease H [Clostridium lentocellum DSM 5427]
 gi|326542145|gb|ADZ84004.1| Ribonuclease H [Clostridium lentocellum DSM 5427]
          Length = 254

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/181 (43%), Positives = 115/181 (63%), Gaps = 1/181 (0%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
           N + + GIDEVGRG LAGPVV AA+IL  +    G+ DSKK++  KRE+LY++I S+A+ 
Sbjct: 67  NQYILVGIDEVGRGPLAGPVVAAAVILPYDTNLVGLKDSKKLTEPKREKLYDQIQSNALG 126

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
           I I       ID+ NI +AT +A+ HA+  L++     L+DG  +   +  +  A+I GD
Sbjct: 127 IGIGIVDADRIDEINILQATFEAMRHALSELKIDYDRVLVDGDKVIPKIQIRQEAIIGGD 186

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
             S SIAAAS+IAKVTRDR+M+     Y  Y ++++ GY + KH + I+  G + +HR +
Sbjct: 187 DKSASIAAASVIAKVTRDRMMKAYANTYDKYDWENNKGYGSQKHYEAIRNYGITPLHRKS 246

Query: 201 F 201
           F
Sbjct: 247 F 247


>gi|269127623|ref|YP_003300993.1| Ribonuclease H [Thermomonospora curvata DSM 43183]
 gi|268312581|gb|ACY98955.1| Ribonuclease H [Thermomonospora curvata DSM 43183]
          Length = 232

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/194 (41%), Positives = 115/194 (59%), Gaps = 6/194 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKRE 69
           + LE  ++     PVAG+DE GRGA AGP+VVAA+IL         G+ DSK ++ ++RE
Sbjct: 16  YGLERALQHAGFSPVAGVDEAGRGACAGPLVVAAVILPSGRRALIDGLTDSKLLTARRRE 75

Query: 70  ELYEKITSSAIISISSASHQY-IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE- 127
           ELY +I   A+   +    ++ ID+  +H+  +  +  A+  L+V P   L DG  +P  
Sbjct: 76  ELYAQIVERAVAWATVIIPRHDIDRLGLHQCNITGMRRALAQLEVRPGYVLSDGFRVPGL 135

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           D+P    AV KGD ++  +AAAS++AKVTRDRLM   H++YP YGF  H GY T +H   
Sbjct: 136 DVP--GLAVPKGDCVAACVAAASVVAKVTRDRLMVELHERYPQYGFAVHKGYVTREHTAA 193

Query: 188 IKEKGPSCIHRLTF 201
           +   GP   HRL+F
Sbjct: 194 LSAHGPCPEHRLSF 207


>gi|288962307|ref|YP_003452602.1| ribonuclease HII [Azospirillum sp. B510]
 gi|288914573|dbj|BAI76058.1| ribonuclease HII [Azospirillum sp. B510]
          Length = 221

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/205 (43%), Positives = 120/205 (58%), Gaps = 9/205 (4%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKI 63
           +RP   LEA         V GIDEVGRG L GPVV AA++L    +P      I+DSK +
Sbjct: 14  QRPDLSLEAGFGAGRR--VCGIDEVGRGPLCGPVVAAAVVLPAEGLPPEIAAQIDDSKAV 71

Query: 64  SHKKREELYEKITSSAIISISSASHQYI-DKHNIHKATLDAIYHAVENL-QVIPRSALID 121
           + + REE+   I + A+    + +     D+ NIH+ATL A+  A E L  V P +ALID
Sbjct: 72  TRRLREEIEPAIRAHALAFAIAEASAAEIDELNIHRATLLAMRRAYEALPGVPPDAALID 131

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           G+  P D+ C+  AV+KGDS SLSIAAASI+AKV RD  M      YP YG+D + GYPT
Sbjct: 132 GKFTP-DIACERVAVVKGDSRSLSIAAASILAKVARDSEMLRLSAVYPHYGWDRNAGYPT 190

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRN 206
            +H   +   G +  HR++F P++ 
Sbjct: 191 PEHLDALTRHGVTPHHRVSFAPVKR 215


>gi|313619218|gb|EFR90981.1| ribonuclease HII [Listeria innocua FSL S4-378]
          Length = 261

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/182 (46%), Positives = 115/182 (63%), Gaps = 3/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG LAGPVV AA+IL  +    GINDSK+++  KR+ L++ I   AI I I 
Sbjct: 73  IAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLNEAKRDILFDVIKEEAISIGIG 132

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
              H  ID+ NI++AT  A+  A+E L   P   LID  ++P        ++IKGD+ S+
Sbjct: 133 IIDHDVIDQVNIYEATKIAMRTALEELNPAPDFVLID--AMPLKYSEAELSLIKGDTKSI 190

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASIIAKVTRDR+M+     YP Y F +++GY T KH   +   G   IHRL+F P+
Sbjct: 191 SIAAASIIAKVTRDRMMQQYDALYPGYDFVNNMGYGTKKHLNGLDTIGICPIHRLSFSPV 250

Query: 205 RN 206
           + 
Sbjct: 251 KE 252


>gi|198274378|ref|ZP_03206910.1| hypothetical protein BACPLE_00523 [Bacteroides plebeius DSM 17135]
 gi|198272744|gb|EDY97013.1| hypothetical protein BACPLE_00523 [Bacteroides plebeius DSM 17135]
          Length = 200

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/179 (41%), Positives = 100/179 (55%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL P      +NDSKK++ K+R EL   I   A   ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPPGFQNEMLNDSKKLTEKQRYELRTVIEKEATAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + IDK NI  A+  A++ AV  L+V P+  LIDG             ++KGD   LS
Sbjct: 73  VTPEEIDKINILNASFLAMHRAVSQLKVTPQHLLIDGNRFNPYPGIPHTTIVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H++YP Y +  + GYPT KH+  I   G +  HR++F  L
Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPMYDWKGNKGYPTKKHRAAIAAYGTTPYHRMSFNLL 191


>gi|330752641|emb|CBL87585.1| ribonuclease HII [uncultured Flavobacteria bacterium]
          Length = 199

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/179 (43%), Positives = 110/179 (61%), Gaps = 5/179 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
            GIDE GRG LAGPV  AA+IL  N     I+DSKK+S  KREEL + I  ++I  SI  
Sbjct: 13  CGIDEAGRGCLAGPVTAAAVILKANFKHDLIDDSKKLSKIKREELSKIIKENSIAYSIQF 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143
              + ID+ NI  A++ A++  ++NL V P   +IDG    +  D+P +   VIKGD   
Sbjct: 73  IDSRKIDEVNILNASILAMHKCIKNLSVKPEFLIIDGNRFKKYKDIPHET--VIKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           L+IA+ASI+AK  RD  M+   KK+P+Y +  + GYPT  H++ IK+ G +  HR +F+
Sbjct: 131 LNIASASILAKHARDYYMQKISKKFPNYHWFKNNGYPTKHHKEAIKKHGLTKYHRKSFK 189


>gi|189219283|ref|YP_001939924.1| Ribonuclease HII [Methylacidiphilum infernorum V4]
 gi|189186141|gb|ACD83326.1| Ribonuclease HII [Methylacidiphilum infernorum V4]
          Length = 226

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/180 (40%), Positives = 108/180 (60%), Gaps = 5/180 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREELYEKITSSAIISI 83
           +AGIDEVGRGA+AGPVV AA+IL P ++PF   + DSK +  KKR+++ + +     IS 
Sbjct: 20  IAGIDEVGRGAIAGPVVAAAVIL-PQDLPFHKYLKDSKAVEEKKRKQVVQWLLKEGRISF 78

Query: 84  SSASH--QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
                  + I++ NIH + L A+  A+  L+  P   L+DG   P  L   +  ++ GD+
Sbjct: 79  GLGFSFVEEIERINIHGSCLLAMRRAISCLEERPDILLVDGIFSPPHLSIPSLTIVGGDA 138

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
              SIAAAS++AKV+RD  M      YP+YG++ + GY TA H + ++ KG S  HR +F
Sbjct: 139 KVASIAAASLVAKVSRDGWMVKLSSLYPEYGWEKNKGYGTANHFESLRTKGLSPYHRKSF 198


>gi|302874784|ref|YP_003843417.1| Ribonuclease H [Clostridium cellulovorans 743B]
 gi|307690600|ref|ZP_07633046.1| ribonuclease HII [Clostridium cellulovorans 743B]
 gi|302577641|gb|ADL51653.1| Ribonuclease H [Clostridium cellulovorans 743B]
          Length = 261

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/196 (43%), Positives = 125/196 (63%), Gaps = 10/196 (5%)

Query: 19  REKNMWPV-AGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKKREELY 72
           R++ ++ + AG+DEVGRG LAGP+V AA++LD       N+  GI DSKK+S KKREEL 
Sbjct: 67  RDQGVYAITAGVDEVGRGPLAGPIVAAAVVLDLYDLKDENLILGIKDSKKLSAKKREELD 126

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           + I   A+  +I  A +  ID+  I     +    A++ L+V P   + DG  +   + C
Sbjct: 127 KLIKERAVSYAIGIADNNEIDEKGIAWCNNEVFKRAIKGLKVRPDLVISDGFPVS-GIEC 185

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +     KGD++S+SIAAASIIAKV RD +M+  HKKYP+Y F+++VGY T +H + IK  
Sbjct: 186 ENKYYYKGDNLSISIAAASIIAKVFRDEIMQDYHKKYPNYNFEANVGYGTEEHVRAIKMF 245

Query: 192 GPSCIHRLTFRPLRNL 207
           G + IHR++F  L+N+
Sbjct: 246 GITPIHRMSF--LKNI 259


>gi|163785164|ref|ZP_02179855.1| RNase HII [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879566|gb|EDP73379.1| RNase HII [Hydrogenivirga sp. 128-5-R1-1]
          Length = 190

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/193 (43%), Positives = 113/193 (58%), Gaps = 7/193 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREE 70
           FE+E  + +K    + GIDE GRG LAGPVV AA+I  P+NI  F   DSKK+S KKRE 
Sbjct: 2   FEIEKSLYQKGFKKIVGIDEAGRGPLAGPVVSAAVIF-PSNIDIFITKDSKKLSPKKREI 60

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L+E+I   A+ + I       IDK NI+ AT  A+  A+  L+      + D        
Sbjct: 61  LFEEIKKKALAVGIGVVDSCEIDKVNIYNATKLAMKRALFTLKSDFDYIITDYVKFD--- 117

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P    +V K D  S+S+AAASIIAKV RD++M    + YP + FD H GYPT  H++ IK
Sbjct: 118 PYPHISVKKADEKSISVAAASIIAKVYRDKIMEYFSEIYP-HSFDKHKGYPTKLHKEEIK 176

Query: 190 EKGPSCIHRLTFR 202
           + G + IHR +F+
Sbjct: 177 KFGITPIHRKSFK 189


>gi|218530087|ref|YP_002420903.1| ribonuclease H [Methylobacterium chloromethanicum CM4]
 gi|218522390|gb|ACK82975.1| Ribonuclease H [Methylobacterium chloromethanicum CM4]
          Length = 216

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/180 (41%), Positives = 103/180 (57%), Gaps = 5/180 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYEKITSSAII 81
           V G DEVGRGAL GPV+VAA+  DP   P  I    +DSK++    RE L   I + A +
Sbjct: 25  VIGCDEVGRGALCGPVMVAAVWFDPVAFPPEILARLDDSKRLDRAAREALTPLIRAHARV 84

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           S+++ S   +D+ N+  ATLDA+  AV  L  +  + L+DGR     L     AVI GD 
Sbjct: 85  SLAAGSRALVDRVNVRGATLDAMRRAVLGLG-LDATVLVDGRDPIPGLTQGCRAVIGGDR 143

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +   IAAASI+AK  RD +MR    ++P Y ++ + GY TA H   +  +G S  HRL+F
Sbjct: 144 LVPQIAAASIVAKTFRDEIMRRLAPRHPAYAWERNAGYGTAAHLAGLTAQGRSQHHRLSF 203


>gi|254560918|ref|YP_003068013.1| RNAse HII [Methylobacterium extorquens DM4]
 gi|254268196|emb|CAX24115.1| RNAse HII [Methylobacterium extorquens DM4]
          Length = 216

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/180 (41%), Positives = 103/180 (57%), Gaps = 5/180 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYEKITSSAII 81
           V G DEVGRGAL GPV+VAA+  DP   P  I    +DSK++    RE L   I + A +
Sbjct: 25  VIGCDEVGRGALCGPVMVAAVWFDPVAFPPEILARLDDSKRLDRAAREALTPLIRAHARV 84

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           S+++ S   +D+ N+  ATLDA+  AV  L  +  + L+DGR     L     AVI GD 
Sbjct: 85  SLAAGSRALVDRVNVRGATLDAMRRAVLGLG-LDATVLVDGRDPIPGLTQGCRAVIGGDR 143

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +   IAAASI+AK  RD +MR    ++P Y ++ + GY TA H   +  +G S  HRL+F
Sbjct: 144 LVPQIAAASIVAKTFRDEIMRRLAPRHPAYAWERNAGYGTAAHLAGLTAQGRSPHHRLSF 203


>gi|162149133|ref|YP_001603594.1| ribonuclease HII [Gluconacetobacter diazotrophicus PAl 5]
 gi|189043600|sp|A9H3E2|RNH2_GLUDA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|161787710|emb|CAP57306.1| Ribonuclease HII [Gluconacetobacter diazotrophicus PAl 5]
          Length = 224

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/189 (41%), Positives = 112/189 (59%), Gaps = 6/189 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISHKKREELYEKITSS--AI 80
           VAG+DEVGRG LAGPVV AA++ D   P  +   ++DSKK++   R   Y  + ++    
Sbjct: 14  VAGVDEVGRGPLAGPVVAAAVMFDSGVPRRLVTQLDDSKKLTEAARLRAYAALHAARGVH 73

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
           I++++AS   I + NI +A   A+  AV  L   P   L+DG + P D  C A  V+ GD
Sbjct: 74  IAVAAASVSEIARLNILRAAFLAMRRAVARLPHQPDMVLVDGNAAP-DFGCPAQCVVGGD 132

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
             SLSIAAASI+AKV RDRLM     ++P YG++ + GY TA+H+  +   G +  HR  
Sbjct: 133 GESLSIAAASIVAKVVRDRLMARLSCRWPGYGWERNAGYGTAEHRAALCRAGTTPHHREA 192

Query: 201 FRPLRNLSV 209
           F  +R L++
Sbjct: 193 FGLVRQLTL 201


>gi|312890316|ref|ZP_07749853.1| RNase HII [Mucilaginibacter paludis DSM 18603]
 gi|311297086|gb|EFQ74218.1| RNase HII [Mucilaginibacter paludis DSM 18603]
          Length = 198

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/177 (39%), Positives = 105/177 (59%), Gaps = 1/177 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL P+     +NDSK+I  + R EL  +I   A+  +++S
Sbjct: 13  AGCDEAGRGCLAGPVFAAAVILPPDFEHGLLNDSKQIDEQTRYELRAEIEQKAVAFAVAS 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
             ++ ID+ NI  A+  A++ A++ L + P   +IDG    +        +I+GD    S
Sbjct: 73  VDNEEIDEINILNASFLAMHRAIDQLHIAPELLIIDGNRFNKYRAIPHHCIIQGDGKYFS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           IAAASI+AK  RD  M+    ++P+Y + ++ GYPT KH+ ++ E G +  HR TFR
Sbjct: 133 IAAASILAKTYRDDYMKKIALEHPEYDWHTNKGYPTIKHRNMVVELGYTPYHRRTFR 189


>gi|170760432|ref|YP_001787753.1| ribonuclease HII [Clostridium botulinum A3 str. Loch Maree]
 gi|189043583|sp|B1KWN1|RNH2_CLOBM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|169407421|gb|ACA55832.1| ribonuclease HII [Clostridium botulinum A3 str. Loch Maree]
          Length = 269

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 119/188 (63%), Gaps = 6/188 (3%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEK 74
           R  N + +AG+DEVGRG LAGP+V AA++LD N       F I DSKK+S KKREEL   
Sbjct: 78  RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREELDII 137

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI  +I+   ++ ID+  I  +  + +  AVE L+V P   L DG ++  +L  + 
Sbjct: 138 IREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAVK-NLNIRN 196

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGDS S+SIA++SIIAKV RD +M+   K+   YGF+ + GY T +H Q IK+ GP
Sbjct: 197 EFIIKGDSKSISIASSSIIAKVYRDNMMKEYSKELNMYGFNHNAGYGTEEHVQAIKKYGP 256

Query: 194 SCIHRLTF 201
           S IHR++F
Sbjct: 257 SKIHRMSF 264


>gi|240138372|ref|YP_002962844.1| RNAse HII [Methylobacterium extorquens AM1]
 gi|240008341|gb|ACS39567.1| RNAse HII [Methylobacterium extorquens AM1]
          Length = 216

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/180 (41%), Positives = 103/180 (57%), Gaps = 5/180 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYEKITSSAII 81
           V G DEVGRGAL GPV+VAA+  DP   P  I    +DSK++    RE L   I + A +
Sbjct: 25  VIGCDEVGRGALCGPVMVAAVWFDPVAFPPEILARLDDSKRLDRAAREALTPLIRAHARV 84

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           S+++ S   +D+ N+  ATLDA+  AV  L  +  + L+DGR     L     AVI GD 
Sbjct: 85  SLAAGSRALVDRVNVRGATLDAMRRAVLGLG-LDATVLVDGRDPIPGLTQGCRAVIGGDR 143

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +   IAAASI+AK  RD +MR    ++P Y ++ + GY TA H   +  +G S  HRL+F
Sbjct: 144 LVPQIAAASIVAKTFRDEIMRRLAPRHPAYAWERNAGYGTAAHLAGLTAQGRSPHHRLSF 203


>gi|46203286|ref|ZP_00051740.2| COG0164: Ribonuclease HII [Magnetospirillum magnetotacticum MS-1]
          Length = 200

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/180 (41%), Positives = 105/180 (58%), Gaps = 5/180 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81
           V G DEVGRGAL+GPV+VAA+  DP   P      ++DSK++    R  L   I S A +
Sbjct: 15  VIGCDEVGRGALSGPVMVAAVWFDPLAFPPELLARLDDSKRLDKATRTALTPLIRSHARV 74

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           +++++S + +D+ N+  ATLDA+  AV  L  +    L+DGR     L     AVI GD 
Sbjct: 75  ALAASSRRLVDRINVRAATLDAMRRAVTRLG-LDAPVLVDGRDTIPGLTQTCRAVIGGDR 133

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +   IAAASIIAK  RD +MR    ++P YG++ + GY TA H   +  +G S  HR++F
Sbjct: 134 LVPQIAAASIIAKTLRDDIMRRLAPRHPAYGWERNAGYGTAVHLAGLSAQGCSPHHRVSF 193


>gi|163851219|ref|YP_001639262.1| ribonuclease H [Methylobacterium extorquens PA1]
 gi|163662824|gb|ABY30191.1| Ribonuclease H [Methylobacterium extorquens PA1]
          Length = 216

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/180 (41%), Positives = 103/180 (57%), Gaps = 5/180 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYEKITSSAII 81
           V G DEVGRGAL GPV+VAA+  DP   P  I    +DSK++    RE L   I + A +
Sbjct: 25  VIGCDEVGRGALCGPVMVAAVWFDPVAFPPEILARLDDSKRLDRAAREALTPLIRAHARV 84

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           S+++ S   +D+ N+  ATLDA+  AV  L  +  + L+DGR     L     AVI GD 
Sbjct: 85  SLAAGSRALVDRVNVRGATLDAMRRAVLGLG-LDATVLVDGRDPIPGLTQGCRAVIGGDR 143

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +   IAAASI+AK  RD +MR    ++P Y ++ + GY TA H   +  +G S  HRL+F
Sbjct: 144 LVPQIAAASIVAKTFRDEIMRRLAPRHPAYAWERNAGYGTAAHLAGLTAQGRSPHHRLSF 203


>gi|163796461|ref|ZP_02190421.1| Ribonuclease HII [alpha proteobacterium BAL199]
 gi|159178311|gb|EDP62855.1| Ribonuclease HII [alpha proteobacterium BAL199]
          Length = 222

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/213 (37%), Positives = 117/213 (54%), Gaps = 10/213 (4%)

Query: 2   FCNSIPE-RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFG 56
           F  SIP+ RP  +LE          V G+DEVGRG  AGPVV  A +LD    P ++   
Sbjct: 3   FMPSIPKTRPTDDLERAAGALEGALVIGVDEVGRGPWAGPVVAGAAVLDLVAMPTHVAAL 62

Query: 57  INDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI-- 114
           I DSK +S  +R +     T  A I++  A  + ID  NI +A+L A+  AV+ L     
Sbjct: 63  IADSKALSAPRRADALAAFTPYAAIALGRAEVEEIDAVNILQASLLAMRRAVDALLATLA 122

Query: 115 --PRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172
             P   L+DG  +P   P  + A++KGD+  LSI+ A+I AK+ RD  M    +++P YG
Sbjct: 123 GPPALILVDGNRLPH-WPHPSRAIVKGDASCLSISVAAIAAKLARDAEMAALAEQHPGYG 181

Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           ++ + GY T +HQ  ++  GP+  HR +F P+R
Sbjct: 182 WERNAGYGTPEHQVALRRLGPTIHHRRSFAPVR 214


>gi|331269647|ref|YP_004396139.1| ribonuclease H [Clostridium botulinum BKT015925]
 gi|329126197|gb|AEB76142.1| ribonuclease H [Clostridium botulinum BKT015925]
          Length = 269

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/182 (45%), Positives = 105/182 (57%), Gaps = 7/182 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD---PNN--IPFGINDSKKISHKKREELYEKITSSAI 80
           +AG DEVGRG LAGP+V AA+ILD    NN  +   INDSKKI  + REEL E I   AI
Sbjct: 81  LAGCDEVGRGPLAGPIVAAAVILDLEFANNDKLILKINDSKKIKPELREELAEIIKEKAI 140

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
              ++   +  ID   I     + +  +V  L+V P   L DG  I        F V+KG
Sbjct: 141 AYCVAEIDNSEIDNKGIAWCNNEVLQRSVNGLKVKPDLVLSDGYKIKNCSIDNKF-VVKG 199

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D+ S SIA ASIIAKV RD+LM+   + Y DY FD ++GY T +H   IK+ G + IHR 
Sbjct: 200 DAKSASIACASIIAKVYRDKLMQKYSEIYKDYAFDKNMGYGTKEHIDSIKKYGCTPIHRK 259

Query: 200 TF 201
           +F
Sbjct: 260 SF 261


>gi|51893167|ref|YP_075858.1| ribonuclease HII [Symbiobacterium thermophilum IAM 14863]
 gi|81388613|sp|Q67MS9|RNH22_SYMTH RecName: Full=Ribonuclease HII 2; Short=RNase HII 2
 gi|51856856|dbj|BAD41014.1| ribonuclease HII [Symbiobacterium thermophilum IAM 14863]
          Length = 211

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/198 (41%), Positives = 114/198 (57%), Gaps = 18/198 (9%)

Query: 20  EKNMW----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           E+ +W     V G+DE GRG LAGPVV AA IL P+    G++DSK+++ K+RE  +  I
Sbjct: 7   ERVLWRHGCQVIGVDEAGRGPLAGPVVAAACILPPDAALPGVDDSKRMTEKRREAAFAAI 66

Query: 76  TSSAI---ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP-----RSA----LIDGR 123
            + A+   I I  A+   ID+ NI +AT +A+  AVE  + +      R+A    L+DG 
Sbjct: 67  QAVAVGWGIGIVDAAR--IDEINILQATFEAMAQAVEGARAMAAARPGRTAEAALLVDGN 124

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
                 P     V+ GD  SLSIAAASI+AKVTRDR+M      YP+YGF  + GY + +
Sbjct: 125 RPLPLWPGWQRTVVGGDHKSLSIAAASILAKVTRDRMMIEYDAHYPEYGFARNKGYGSRE 184

Query: 184 HQQVIKEKGPSCIHRLTF 201
           H   ++  GP  +HR TF
Sbjct: 185 HWDALERYGPCPLHRRTF 202


>gi|225011416|ref|ZP_03701854.1| Ribonuclease H [Flavobacteria bacterium MS024-2A]
 gi|225003919|gb|EEG41891.1| Ribonuclease H [Flavobacteria bacterium MS024-2A]
          Length = 196

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/184 (39%), Positives = 112/184 (60%), Gaps = 11/184 (5%)

Query: 27  AGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           AG DE GRG LAGPV  AA+IL   NN+P  +NDSKK++ K+R  L  +I   A+  +++
Sbjct: 12  AGTDEAGRGCLAGPVTAAAVILPKKNNLPL-LNDSKKLTEKQRYALRPEIEKQALAYAVA 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLP--CQAFAVIKGD 140
               + ID+ NI  A++ A++ A++ L +IP   ++DG      ED+P  C    V+KGD
Sbjct: 71  HVYQEEIDEINILNASIKAMHLALKQLSLIPEFIVVDGNRFKQFEDIPHAC----VVKGD 126

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
               +IAAAS++AK  RD  M+    ++P Y ++ + GYPT KH++ I   G +  HR++
Sbjct: 127 GKYQNIAAASVLAKTYRDDYMKKLDTEFPQYNWNKNKGYPTKKHREAIATFGITVHHRIS 186

Query: 201 FRPL 204
           F+ L
Sbjct: 187 FQLL 190


>gi|319441364|ref|ZP_07990520.1| ribonuclease HII [Corynebacterium variabile DSM 44702]
          Length = 227

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 79/200 (39%), Positives = 106/200 (53%), Gaps = 6/200 (3%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKK 62
           S+PE     LE  V +  + PVAG+DE GRGA  GPV +AA IL P  +P   G+ DSKK
Sbjct: 8   SMPE--GRTLEWAVHKAGLDPVAGVDEAGRGACCGPVTIAACILPPGPLPELDGLTDSKK 65

Query: 63  ISHKKREELYEKITSSAIISISS-ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           ++ KKR+ L++ I   A+          Y+D   I  A L  +  AV  L V P   L D
Sbjct: 66  LTAKKRDRLFDIIVDVAVDYAVVHVPASYVDDWGIQHANLGGMRRAVARLDVRPGYILTD 125

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
              I +        V+KGD I   I+AAS++AKV+RDR+M     +YP YG   H GY T
Sbjct: 126 AMKI-DGFTRPHLPVVKGDLICRCISAASVLAKVSRDRMMVDLDARYPGYGLAGHKGYGT 184

Query: 182 AKHQQVIKEKGPSCIHRLTF 201
           A H + +   G +  HR T+
Sbjct: 185 AAHMESVCLLGGTPEHRYTY 204


>gi|319900379|ref|YP_004160107.1| RNase HII [Bacteroides helcogenes P 36-108]
 gi|319415410|gb|ADV42521.1| RNase HII [Bacteroides helcogenes P 36-108]
          Length = 201

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/181 (41%), Positives = 107/181 (59%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++ K+R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYLLREVIEKEALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143
            S + ID+ NI  A+  A++ A++ L V P+  LIDG    +  DLP     ++KGD   
Sbjct: 73  VSPEEIDRINILNASFLAMHRAIDGLSVHPQHLLIDGNRFKKYRDLPHTT--IVKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAASI+AK  RD  M   H++YP Y ++ + GYPT KH+  I  +G +  HR+TF  
Sbjct: 131 LSIAAASILAKTYRDDYMNGLHEEYPYYDWNHNKGYPTKKHRAAIAVRGTTPYHRMTFNL 190

Query: 204 L 204
           L
Sbjct: 191 L 191


>gi|307297954|ref|ZP_07577758.1| Ribonuclease H [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916040|gb|EFN46423.1| Ribonuclease H [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 241

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/183 (42%), Positives = 115/183 (62%), Gaps = 6/183 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAII-LDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           +AG+DE GRG LAGPVV AA+I L+P +   G+ DSK +  K RE L+ +I  ++I+ I 
Sbjct: 32  IAGVDEAGRGPLAGPVVAAAVIVLNPVD---GVYDSKALCRKTRELLFGQILENSIVGIG 88

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S + +D  N+  AT  A+  A+  L   P   ++DG+S+  D+  +   ++ GD  S 
Sbjct: 89  LCSPEEVDILNVFAATRLAMNRALRILSRKPDYVIVDGKSLRLDISGEC--IVGGDRRSA 146

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IA+ASI+AKV RDR+M      YP+YG+ +H GY T  H + +++ GP+  HRLTFRP+
Sbjct: 147 AIASASIVAKVFRDRIMDSLDILYPEYGYRNHKGYCTDMHLRALRKYGPTTWHRLTFRPV 206

Query: 205 RNL 207
           R L
Sbjct: 207 REL 209


>gi|60679832|ref|YP_209976.1| ribonuclease HII [Bacteroides fragilis NCTC 9343]
 gi|253564368|ref|ZP_04841825.1| ribonuclease HII [Bacteroides sp. 3_2_5]
 gi|265764964|ref|ZP_06093239.1| ribonuclease HII [Bacteroides sp. 2_1_16]
 gi|81317095|sp|Q5LIL2|RNH2_BACFN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|60491266|emb|CAH06014.1| putative ribonuclease HII [Bacteroides fragilis NCTC 9343]
 gi|251948144|gb|EES88426.1| ribonuclease HII [Bacteroides sp. 3_2_5]
 gi|263254348|gb|EEZ25782.1| ribonuclease HII [Bacteroides sp. 2_1_16]
 gi|301161352|emb|CBW20892.1| putative ribonuclease HII [Bacteroides fragilis 638R]
          Length = 201

 Score =  124 bits (312), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/181 (43%), Positives = 106/181 (58%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK++S K+R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFENELLNDSKQLSEKQRYALREVIERDAVAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143
            S + IDK NI  A+  A++ AV+ L+  P+  LIDG    +  D+P     VIKGD   
Sbjct: 73  VSPEEIDKINILNASFLAMHRAVDRLKTRPQHLLIDGNRFKKYPDIPHTT--VIKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAASI+AK  RD  M   H+++P Y ++ + GYPT KH+  I   G +  HR+TF  
Sbjct: 131 LSIAAASILAKTYRDDYMNKLHQEFPCYDWEHNKGYPTKKHRAAIAGHGTTPYHRMTFNL 190

Query: 204 L 204
           L
Sbjct: 191 L 191


>gi|15673275|ref|NP_267449.1| ribonuclease HII [Lactococcus lactis subsp. lactis Il1403]
 gi|13878721|sp|Q9CG17|RNH2_LACLA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|12724270|gb|AAK05391.1|AE006361_7 ribonuclease HII [Lactococcus lactis subsp. lactis Il1403]
 gi|326406831|gb|ADZ63902.1| ribonuclease HII [Lactococcus lactis subsp. lactis CV56]
          Length = 258

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/197 (41%), Positives = 117/197 (59%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            E E  +  + +  +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKK+   K   +
Sbjct: 59  LEFEKELYGQEIQLIAGIDEVGRGPLAGPVVTAAVILPKNCKIRGLNDSKKVPKSKHHAI 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
             +I   A+ I I     + ID+ NI++AT  A+  AV  L V P   LID   +  D P
Sbjct: 119 LSEIQEKALAIGIGIVDAEKIDEVNIYEATKIAMIQAVSKLSVKPEHLLIDAMVL--DFP 176

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +I GD+ S SIAAASI+AKVTRD +M+    ++P+Y F+ + GY TAKH + + +
Sbjct: 177 IAQTKIIHGDARSASIAAASIVAKVTRDEMMKEFALEFPEYDFEHNAGYGTAKHLEALTK 236

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR ++ P++ +
Sbjct: 237 YGITRIHRKSYEPIKTM 253


>gi|254821206|ref|ZP_05226207.1| ribonuclease HII [Mycobacterium intracellulare ATCC 13950]
          Length = 239

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/201 (38%), Positives = 113/201 (56%), Gaps = 10/201 (4%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE+ +    + PVAG+DEVGRGA AGP+VVAA +L P  +     ++DSKK++   RE+L
Sbjct: 20  LESALYRNGLGPVAGVDEVGRGACAGPLVVAACVLGPGRMESLAALDDSKKLTEAAREKL 79

Query: 72  YEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           +  I   A    ++ I  A    +D+  +H A ++ +  AV  L V P   L DG  +P 
Sbjct: 80  FPLIRRYALAYHVVFIPPAE---VDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP- 135

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            L   +  VI GD+++  IAAAS++AKV+RDRLM      +P YGF  H GY T  H   
Sbjct: 136 GLAVPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMEADHPGYGFALHKGYSTPAHSTA 195

Query: 188 IKEKGPSCIHRLTFRPLRNLS 208
           +   GP   HR +F  +R ++
Sbjct: 196 LARLGPCPEHRYSFINVRRVA 216


>gi|53711581|ref|YP_097573.1| ribonuclease HII [Bacteroides fragilis YCH46]
 gi|81383847|sp|Q64ZN7|RNH2_BACFR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|52214446|dbj|BAD47039.1| ribonuclease HII [Bacteroides fragilis YCH46]
          Length = 201

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/181 (43%), Positives = 106/181 (58%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK++S K+R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFENELLNDSKQLSEKQRYALREVIERDAVAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143
            S + IDK NI  A+  A++ AV+ L+  P+  LIDG    +  D+P     VIKGD   
Sbjct: 73  VSPEEIDKINILNASFLAMHRAVDRLKTRPQHLLIDGNRFKKYPDIPHTT--VIKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAASI+AK  RD  M   H+++P Y ++ + GYPT KH+  I   G +  HR+TF  
Sbjct: 131 LSIAAASILAKTYRDDYMNRLHQEFPCYDWEHNKGYPTKKHRAAIAGHGTTPYHRMTFNL 190

Query: 204 L 204
           L
Sbjct: 191 L 191


>gi|325266705|ref|ZP_08133381.1| ribonuclease HII [Kingella denitrificans ATCC 33394]
 gi|324981814|gb|EGC17450.1| ribonuclease HII [Kingella denitrificans ATCC 33394]
          Length = 202

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/180 (42%), Positives = 105/180 (58%), Gaps = 1/180 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS-SAIISISS 85
           AG+DE GRG L G V  AA+IL  +    G+ DSKK+S KKR+EL  +I + +A   I+ 
Sbjct: 13  AGVDEAGRGCLVGSVFAAAVILPAHFDLRGLTDSKKLSEKKRDELAVQIKAQAAAYCIAR 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A    I + NI  AT+ A+  AV+ L+  P    IDG  +P DL   A  V+KGD+   +
Sbjct: 73  ADVGEIAQLNILHATMLAMKRAVQGLEKQPAKVWIDGNRMPPDLGVPAECVVKGDAKIAA 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AAS++AKV RD  M   H++YP YGF  H GY TA H   + + G    HR  F P++
Sbjct: 133 ISAASVLAKVARDAEMYALHERYPQYGFAQHKGYGTAAHLAALAQFGALPEHRADFAPVK 192


>gi|111225146|ref|YP_715940.1| ribonuclease HII [Frankia alni ACN14a]
 gi|123043979|sp|Q0RDP7|RNH2_FRAAA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|111152678|emb|CAJ64419.1| Endoribonuclease H. RNase H (RnhB) [Frankia alni ACN14a]
          Length = 241

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/197 (38%), Positives = 112/197 (56%), Gaps = 11/197 (5%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN---IPFGINDSKKISHKKR 68
           F  E  +    + PVAG+DE GRGA AGP+VVAA++L P+    +   + DSK ++ + R
Sbjct: 15  FGYERALVRCGLGPVAGVDEAGRGACAGPLVVAAVVLGPDGRRRLSPRLADSKLLTEQVR 74

Query: 69  EELYEKITSSAI----ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           E L++++  +A     + I +A    ID+  +H A +  +  AV  L   P   L DG +
Sbjct: 75  EGLFDEVLRAAADWSAVVIPAAE---IDRTGVHVANITGMRRAVARLGHRPGYVLTDGFA 131

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +      ++ AV+KGD ++  IAAASI+AKVTRDR+MR  H +Y +Y F  H GY TA H
Sbjct: 132 VA-GFGTESLAVVKGDRVAACIAAASIVAKVTRDRIMRALHTRYAEYDFAQHKGYVTAAH 190

Query: 185 QQVIKEKGPSCIHRLTF 201
              +   GP   HR ++
Sbjct: 191 AAALARYGPCDEHRKSY 207


>gi|291278613|ref|YP_003495448.1| ribonuclease HII [Deferribacter desulfuricans SSM1]
 gi|290753315|dbj|BAI79692.1| ribonuclease HII [Deferribacter desulfuricans SSM1]
          Length = 187

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 77/175 (44%), Positives = 106/175 (60%), Gaps = 1/175 (0%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSA 86
           G+DEVGRG  AGP+VV+A+IL P+     I DSKKIS K+RE+L + I   A+  S++  
Sbjct: 8   GLDEVGRGCFAGPLVVSAVILPPDFKDERIIDSKKISEKQREKLAQYIKDIALDYSVAVV 67

Query: 87  SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSI 146
            ++ IDK NI +AT  A++ A+  L        ID   +     C+   V KG+S   +I
Sbjct: 68  CNKVIDKINILQATKQAMHIAISRLNNQYSFIAIDAVKLKNFYGCKINPVNKGESKFQNI 127

Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           AAASIIAKV RD LM+  H KYP+Y +  + GY T +H + IK+ G   +HR TF
Sbjct: 128 AAASIIAKVYRDNLMKKLHLKYPEYNWYKNKGYGTKEHIEAIKKYGICELHRKTF 182


>gi|169827106|ref|YP_001697264.1| ribonuclease HII [Lysinibacillus sphaericus C3-41]
 gi|168991594|gb|ACA39134.1| Ribonuclease HII [Lysinibacillus sphaericus C3-41]
          Length = 253

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 80/184 (43%), Positives = 114/184 (61%), Gaps = 4/184 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83
           +AG+DE GRG LAGPVV AA+IL  N+    G+NDSK++S  KR      I   AI   I
Sbjct: 70  IAGVDEAGRGPLAGPVVTAAVILPTNSEALVGLNDSKQLSKDKRNAFAALIKKHAISYFI 129

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
              S Q ID+ NI++AT  ++  +VE+L   P   L+D  ++P  +P  +  +IKGD+ S
Sbjct: 130 HFQSAQQIDELNIYEATKQSMKASVESLSRKPDYVLVDAMTLPMAIPQDS--IIKGDAKS 187

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           L+IAAASI+AK  RD  M    K +P YGF  H GY T +H + ++E GP+  HR +F P
Sbjct: 188 LAIAAASILAKTARDDYMEQLDKDFPMYGFAQHAGYGTKQHLKALEEYGPTIHHRKSFEP 247

Query: 204 LRNL 207
           ++++
Sbjct: 248 IKSM 251


>gi|67920299|ref|ZP_00513819.1| Ribonuclease H [Crocosphaera watsonii WH 8501]
 gi|67857783|gb|EAM53022.1| Ribonuclease H [Crocosphaera watsonii WH 8501]
          Length = 196

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/182 (41%), Positives = 107/182 (58%), Gaps = 5/182 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI- 80
           +AG+DEVGRG L GPVV AA++ +   I      G+ DSK++S K+RE L  +I + AI 
Sbjct: 13  IAGVDEVGRGCLFGPVVAAAVVFEKAAISQLPEIGVKDSKQLSAKRREILATEIKNRAIS 72

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             IS AS + ID+ NI  A+L A+  +V  L V P   L+DG     ++      +I GD
Sbjct: 73  YYISYASAREIDRLNILNASLLAMQRSVTKLSVTPELCLVDGNKKIPNITIPQETIIGGD 132

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
             S  IAAASI+AKV RD+L+     KYP Y  +++ GY T KH+  ++E  P   HR +
Sbjct: 133 RTSPIIAAASILAKVWRDKLIIRLATKYPHYDLENNKGYGTKKHRLALQEYAPCFHHRHS 192

Query: 201 FR 202
           F+
Sbjct: 193 FK 194


>gi|145218837|ref|YP_001129546.1| ribonuclease H [Prosthecochloris vibrioformis DSM 265]
 gi|189043641|sp|A4SC35|RNH2_PROVI RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|145205001|gb|ABP36044.1| RNase HII [Chlorobium phaeovibrioides DSM 265]
          Length = 205

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/196 (40%), Positives = 107/196 (54%), Gaps = 10/196 (5%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAI----ILDPNNIPFG-INDSKKISHKKREE 70
           E+ +W     + GIDE GRG LAGPVV AA+       P     G +NDSKK+S   R E
Sbjct: 6   EEQLWNSMERICGIDEAGRGPLAGPVVAAAVVFPRWFRPGKGILGRMNDSKKLSPSLRRE 65

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           +   I  +A+  S+S    Q ID+ NI  AT+ A+  AV  L + P   L+DG     + 
Sbjct: 66  MAPAIQDAALAWSVSVVDAQTIDRINILSATMLAMNRAVGGLGLTPDMLLVDGNRFSPET 125

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     ++ GD+   SIAAAS++AK  RD +M    + YP+YGF  H GYPTA H   I+
Sbjct: 126 PVAYRTLVGGDAYIYSIAAASVLAKTARDAIMSSYDRDYPEYGFARHAGYPTAMHISAIR 185

Query: 190 EKGPSCIHRLTFRPLR 205
           + G   IHR +F+  R
Sbjct: 186 QHGRCPIHRFSFKVRR 201


>gi|212703538|ref|ZP_03311666.1| hypothetical protein DESPIG_01583 [Desulfovibrio piger ATCC 29098]
 gi|212673038|gb|EEB33521.1| hypothetical protein DESPIG_01583 [Desulfovibrio piger ATCC 29098]
          Length = 211

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 82/195 (42%), Positives = 111/195 (56%), Gaps = 20/195 (10%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
           +AGIDE GRG LAGPVV AA+IL +  ++P G+ DSK +S  +RE L   I   A+   +
Sbjct: 1   MAGIDEAGRGCLAGPVVAAAVILPEAYDLP-GLTDSKALSAAQREHLAPLIRQCALAWGL 59

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPE--------------- 127
                  ID+ NI +AT +A+  AV +L+  P   L+DG +++PE               
Sbjct: 60  GVVWPATIDRINILQATFEAMSRAVASLKRRPNLLLVDGNKTVPEPVLLPHWRKRHADAT 119

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           DLP Q  AV+ GDS   +I+AAS++AK  RD LM    + +P YGF  H GY TA H + 
Sbjct: 120 DLPRQN-AVVGGDSSVPAISAASVLAKTYRDMLMEHLDRHHPGYGFARHKGYGTADHYEA 178

Query: 188 IKEKGPSCIHRLTFR 202
           +   GP   HRLTFR
Sbjct: 179 LHRLGPCRQHRLTFR 193


>gi|153940580|ref|YP_001391739.1| ribonuclease HII [Clostridium botulinum F str. Langeland]
 gi|170755844|ref|YP_001781984.1| ribonuclease HII [Clostridium botulinum B1 str. Okra]
 gi|189043581|sp|B1II72|RNH2_CLOBK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|189043582|sp|A7GG29|RNH2_CLOBL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|152936476|gb|ABS41974.1| ribonuclease HII [Clostridium botulinum F str. Langeland]
 gi|169121056|gb|ACA44892.1| ribonuclease HII [Clostridium botulinum B1 str. Okra]
 gi|295319764|gb|ADG00142.1| ribonuclease HII [Clostridium botulinum F str. 230613]
          Length = 269

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 119/188 (63%), Gaps = 6/188 (3%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEK 74
           R  N + +AG+DEVGRG LAGP+V AA++LD N       F I DSKK+S KKREEL   
Sbjct: 78  RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREELDII 137

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI  +I+   ++ ID+  I  +  + +  AVE L+V P   L DG ++ ++L  + 
Sbjct: 138 IREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAV-KNLNIRN 196

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGDS S+SIA++SIIAKV RD +M+   K    YGF+ + GY T +H Q IK+ GP
Sbjct: 197 EFIIKGDSKSISIASSSIIAKVYRDNMMKEYSKGLNMYGFNHNAGYGTEEHVQAIKKYGP 256

Query: 194 SCIHRLTF 201
           S IHR++F
Sbjct: 257 SKIHRMSF 264


>gi|253682672|ref|ZP_04863469.1| ribonuclease HII (RNase HII) [Clostridium botulinum D str. 1873]
 gi|253562384|gb|EES91836.1| ribonuclease HII (RNase HII) [Clostridium botulinum D str. 1873]
          Length = 269

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 83/182 (45%), Positives = 106/182 (58%), Gaps = 7/182 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD---PNN--IPFGINDSKKISHKKREELYEKITSSAI 80
           +AG DEVGRG LAGP+V AA+ILD    NN  +   INDSKKI  + REEL E I   AI
Sbjct: 81  LAGCDEVGRGPLAGPIVAAAVILDLEFANNDKLILKINDSKKIKPELREELAEIIKEKAI 140

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
              I+   +  ID   I     + +  +V  L+V P  AL DG  I        F V+KG
Sbjct: 141 SYCIAEIDNLEIDNKGIAWCNNEVLQRSVNGLRVKPNLALSDGYKIKNCSIDNKF-VVKG 199

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D+ S SIA ASIIAKV RD+LM+   + Y +Y FD ++GY T +H   IK+ G + IHR 
Sbjct: 200 DAKSASIACASIIAKVHRDKLMQKYSEIYKEYAFDKNMGYGTKEHIDSIKKYGYTPIHRK 259

Query: 200 TF 201
           +F
Sbjct: 260 SF 261


>gi|226949794|ref|YP_002804885.1| ribonuclease HII [Clostridium botulinum A2 str. Kyoto]
 gi|226842944|gb|ACO85610.1| ribonuclease HII [Clostridium botulinum A2 str. Kyoto]
 gi|322806706|emb|CBZ04275.1| ribonuclease HII [Clostridium botulinum H04402 065]
          Length = 269

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 118/188 (62%), Gaps = 6/188 (3%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEK 74
           R  N + +AG+DEVGRG LAGP+V AA++LD N       F I DSKK+S KKREEL   
Sbjct: 78  RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREELDII 137

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI  +I+   ++ ID+  I  +  + +  AVE L+V P   L DG ++  +L  + 
Sbjct: 138 IREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAVK-NLNIRN 196

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGDS S+SIA++SIIAKV RD +M+   K    YGF+ + GY T +H Q IK+ GP
Sbjct: 197 EFIIKGDSKSISIASSSIIAKVYRDNMMKEYSKGLNMYGFNHNAGYGTEEHVQAIKKHGP 256

Query: 194 SCIHRLTF 201
           S IHR++F
Sbjct: 257 SKIHRMSF 264


>gi|154491927|ref|ZP_02031553.1| hypothetical protein PARMER_01557 [Parabacteroides merdae ATCC
           43184]
 gi|154088168|gb|EDN87213.1| hypothetical protein PARMER_01557 [Parabacteroides merdae ATCC
           43184]
          Length = 199

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 76/179 (42%), Positives = 103/179 (57%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL P+     +NDSK++S KKR  L   I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPPDFHNEDLNDSKQLSEKKRYALRPIIEREAIAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + ID+ NI KA+  A++ A++ L+V P   LIDG         +   V+KGD   LS
Sbjct: 73  VTPEEIDRINILKASFLAMHRAIDQLKVKPEHLLIDGNRFTPYPGLKHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M    ++YP Y +  + GYPT  H++ I+E G +  HR TF  L
Sbjct: 133 IAAASILAKTYRDDYMDSLDREYPAYHWKENKGYPTKAHREAIRECGITPYHRKTFTLL 191


>gi|168184647|ref|ZP_02619311.1| ribonuclease HII [Clostridium botulinum Bf]
 gi|237795877|ref|YP_002863429.1| ribonuclease HII [Clostridium botulinum Ba4 str. 657]
 gi|182672292|gb|EDT84253.1| ribonuclease HII [Clostridium botulinum Bf]
 gi|229260950|gb|ACQ51983.1| ribonuclease HII [Clostridium botulinum Ba4 str. 657]
          Length = 269

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 118/188 (62%), Gaps = 6/188 (3%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEK 74
           R  N + +AG+DEVGRG LAGP+V AA++LD N       F I DSKK+S KKREEL   
Sbjct: 78  RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREELDII 137

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI  +I+   ++ ID+  I  +  + +  AVE L+V P   L DG ++  +L  + 
Sbjct: 138 IREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAVK-NLNIRN 196

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGDS S+SIA++SIIAKV RD +M+   K    YGF+ + GY T +H Q IK+ GP
Sbjct: 197 EFIIKGDSKSISIASSSIIAKVYRDNMMKEYSKGLNMYGFNHNAGYGTEEHVQAIKKYGP 256

Query: 194 SCIHRLTF 201
           S IHR++F
Sbjct: 257 SKIHRMSF 264


>gi|298207692|ref|YP_003715871.1| putative ribonuclease HII [Croceibacter atlanticus HTCC2559]
 gi|83850329|gb|EAP88197.1| putative ribonuclease HII [Croceibacter atlanticus HTCC2559]
          Length = 199

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 76/183 (41%), Positives = 109/183 (59%), Gaps = 9/183 (4%)

Query: 27  AGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            G DE GRG LAGPV  AA+IL  D NN P  +NDSKK++HK+R+ L   I + A+  S+
Sbjct: 13  CGTDEAGRGCLAGPVTAAAVILPQDFNN-PV-LNDSKKLTHKQRDLLRPIIETEAVSFSV 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDS 141
                  IDK NI  A++  +  ++ +LQ  P    +DG      +D+P +   +IKGD 
Sbjct: 71  IHIDIDTIDKINILNASILGMQESIRSLQTKPEHIAVDGNRFKPCDDIPYKC--IIKGDG 128

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             L+IA+ASI+AK  RD  M   H+++P Y +  + GYPT +H++ I+  GPS  HR +F
Sbjct: 129 KYLNIASASILAKTYRDNYMEKIHEEFPMYNWKQNKGYPTKEHREAIRTHGPSKYHRKSF 188

Query: 202 RPL 204
           R L
Sbjct: 189 RLL 191


>gi|298707143|emb|CBJ29916.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 350

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/211 (38%), Positives = 115/211 (54%), Gaps = 33/211 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS-HKKREELYEKITSS--AIIS 82
           V G+DE GRG  AGPVV AA ++ P+    GI DSKKI+ H  RE L++++T +   + +
Sbjct: 132 VIGVDEAGRGPFAGPVVAAACMIPPDVNILGIQDSKKITQHSDRETLFKELTETPGVVWA 191

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA-----------------------L 119
            S      ID+ NI +AT +A+ + V  L+V  +S                        L
Sbjct: 192 ASEVGSSRIDEINILEATKEAMTNCV--LEVCSKSVEASANKSTNTKKKKNTSDKKPFVL 249

Query: 120 IDGRSIP---EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
           +DG   P    D   +A  V+ GD +   IAAASIIAKVTRDRLM    +++P +GF+ H
Sbjct: 250 VDGNFTPPGLGDAKVEAECVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPVFGFERH 309

Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
            GY TA H+  I+E G   IHR +F  L+N+
Sbjct: 310 KGYGTAAHRDAIREHGMVEIHRRSF--LKNM 338


>gi|153934073|ref|YP_001384616.1| ribonuclease HII [Clostridium botulinum A str. ATCC 19397]
 gi|153935357|ref|YP_001388133.1| ribonuclease HII [Clostridium botulinum A str. Hall]
 gi|189043578|sp|A7FW05|RNH2_CLOB1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|152930117|gb|ABS35617.1| ribonuclease HII [Clostridium botulinum A str. ATCC 19397]
 gi|152931271|gb|ABS36770.1| ribonuclease HII [Clostridium botulinum A str. Hall]
          Length = 269

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 118/188 (62%), Gaps = 6/188 (3%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEK 74
           R  N + +AG+DEVGRG LAGP+V AA++LD N       F I DSKK+S KKREEL   
Sbjct: 78  RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRVFNIKDSKKLSEKKREELDII 137

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI  +I+   ++ ID+  I  +  + +  AVE L+V P   L DG ++  +L  + 
Sbjct: 138 IREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAVK-NLNIRN 196

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGDS S+SIA++SIIAKV RD +M+   K    YGF+ + GY T +H Q IK+ GP
Sbjct: 197 EFIIKGDSKSISIASSSIIAKVYRDSMMKEYSKGLNMYGFNHNAGYGTEEHVQAIKKHGP 256

Query: 194 SCIHRLTF 201
           S IHR++F
Sbjct: 257 SKIHRMSF 264


>gi|72162544|ref|YP_290201.1| ribonuclease HII [Thermobifida fusca YX]
 gi|97189430|sp|Q47MZ1|RNH2_THEFY RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|71916276|gb|AAZ56178.1| ribonuclease H [Thermobifida fusca YX]
          Length = 231

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 72/199 (36%), Positives = 112/199 (56%), Gaps = 1/199 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P +++E  +       VAG+DEVGRGA AGPV+V A I D +  P G+ DSK+++ ++R 
Sbjct: 11  PTYDVEQELIAAGARVVAGLDEVGRGAWAGPVLVCAAITDGSPPPEGLTDSKRLTPRRRT 70

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            + E++ S     +   AS   ID+  + +A   A + A++ L V P + ++DG+     
Sbjct: 71  AMAEQVRSWVRGYAFGQASPAEIDRLGMTEALRLAAHRALDALPVRPDAVIVDGKHDYVG 130

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
            P      +K D   +S+AAAS++AKV RD LM     +YP YGF +  GYP+  H+  +
Sbjct: 131 APWTVRTHVKADLTCVSVAAASVLAKVHRDALMAELDAEYPGYGFATGAGYPSPVHRAAL 190

Query: 189 KEKGPSCIHRLTFRPLRNL 207
            E GP+  HRL++  L  L
Sbjct: 191 AEHGPTPHHRLSWSYLDRL 209


>gi|328752252|gb|EGF65868.1| ribonuclease HII [Propionibacterium acnes HL020PA1]
          Length = 204

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 77/189 (40%), Positives = 102/189 (53%), Gaps = 6/189 (3%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSA 79
            + PVAG DE GRGA AGP+V AA+ILD        G+ DSK +S  KRE L+  I   A
Sbjct: 11  GLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALFNVIMDKA 70

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED-LPCQAFAVI 137
           + +S         D+  + +A +  +  AV  L V P   L DG   P D L      + 
Sbjct: 71  LAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDG--FPVDGLTVPDLGMW 128

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGDS+   +AAASI+AKV RDR+M     + P Y F  H GY TA  Q+ +KE GPS  H
Sbjct: 129 KGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALQQRRLKELGPSRQH 188

Query: 198 RLTFRPLRN 206
           R+++  +R 
Sbjct: 189 RMSYANVRR 197


>gi|225009987|ref|ZP_03700459.1| Ribonuclease H [Flavobacteria bacterium MS024-3C]
 gi|225005466|gb|EEG43416.1| Ribonuclease H [Flavobacteria bacterium MS024-3C]
          Length = 193

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 71/183 (38%), Positives = 107/183 (58%), Gaps = 1/183 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG DE GRG L+GPV  AA+IL  N     ++DSKK+S K+R  L   I   A+   +S
Sbjct: 11  IAGTDEAGRGCLSGPVTAAAVILPKNFYHPMLDDSKKLSAKQRAILAPIIKQEAVSYGVS 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
                 ID+ NI +A++ A++ ++  L+ IP   ++DG      L      V+KGD    
Sbjct: 71  HVFPHVIDRINILQASILAMHKSIAKLKTIPEKIIVDGNKFNPYLSIPHETVVKGDGKFY 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAAS++AK  RD  M   H+K+P Y ++ ++GYPTAKH+  I   G +  HR TF+ +
Sbjct: 131 AIAAASVLAKTARDEYMMELHQKFPLYQWNKNMGYPTAKHRNAIATYGITPHHRKTFKGV 190

Query: 205 RNL 207
           ++L
Sbjct: 191 KDL 193


>gi|313204705|ref|YP_004043362.1| RNAse hii [Paludibacter propionicigenes WB4]
 gi|312444021|gb|ADQ80377.1| RNase HII [Paludibacter propionicigenes WB4]
          Length = 220

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 72/181 (39%), Positives = 110/181 (60%), Gaps = 7/181 (3%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAII-SISS 85
           G DE GRG LAGPVV AA+IL  + + P  +NDSK++S ++R+ L   I   A+   ++ 
Sbjct: 15  GCDEAGRGCLAGPVVAAAVILPADFDCPL-LNDSKQLSEQERDTLRPIIEQQALAWGVAL 73

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143
                ID+ NI  A++ A++ A++ L + P   ++DG       D+P Q   ++KGDS  
Sbjct: 74  VDSGEIDEINILNASILAMHRAIDKLNIRPEFIIVDGNKFKSYADIPYQT--IVKGDSKY 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAAS++AK  RD +M+  H +YP Y +D +  YPT KH+  I++ G +  HRL++  
Sbjct: 132 LSIAAASVLAKTHRDEMMQQLHAEYPHYDWDKNKAYPTVKHRNAIRKFGTTPYHRLSYDL 191

Query: 204 L 204
           L
Sbjct: 192 L 192


>gi|169824229|ref|YP_001691840.1| ribonuclease HII [Finegoldia magna ATCC 29328]
 gi|167831034|dbj|BAG07950.1| ribonuclease HII [Finegoldia magna ATCC 29328]
          Length = 207

 Score =  124 bits (310), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 80/190 (42%), Positives = 109/190 (57%), Gaps = 12/190 (6%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
           + GIDEVGRG LAGPVV  AII+  N  I  G+ DSKK+S KKR +  + I + A+  S+
Sbjct: 14  ICGIDEVGRGPLAGPVVTCAIIMPKNCEIIEGVTDSKKLSEKKRIKFKDMILNQALAYSV 73

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALIDGRSIPEDLPCQAFAVI 137
           +      ID+ NI +AT  ++  AVE+L+      + P   +ID   I  D+   +F  +
Sbjct: 74  NFVDQGVIDEINIKQATRLSMKRAVESLKTKDNKFIKPDLIVIDAEEIDTDIKQMSF--V 131

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGD     I+ ASI+AKV RD  M+     YP YGF+ H GY T  H+++I E G   +H
Sbjct: 132 KGDEKLYPISCASIVAKVIRDEYMKEMAVIYPQYGFEKHKGYGTKLHREMILEHGECPLH 191

Query: 198 RLTFRPLRNL 207
           R TF  LR L
Sbjct: 192 RKTF--LRKL 199


>gi|221633032|ref|YP_002522257.1| ribonuclease HII [Thermomicrobium roseum DSM 5159]
 gi|221155904|gb|ACM05031.1| ribonuclease HII [Thermomicrobium roseum DSM 5159]
          Length = 219

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/197 (42%), Positives = 120/197 (60%), Gaps = 5/197 (2%)

Query: 8   ERPHFELE-AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISH 65
           ERP FELE A+ +  N W VAG+DEVGRGALAGPVV AA I +P+  +P  + DSK+++ 
Sbjct: 16  ERPTFELEQALWQAGNRW-VAGVDEVGRGALAGPVVAAACIFEPSTELPDQLRDSKRLTD 74

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
            +R  L + +   ++  +I +ASH+ +D+  I +AT  A+  A++ L  +    L DG  
Sbjct: 75  PQRRALADWVRQYSLRWAIGAASHREVDRLGIVRATALAMLRALQRLGPVD-HVLYDGLP 133

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           + E       AV+ GD    SIAAASI+AKV RD LM     +YP YG++ + GY T  H
Sbjct: 134 LTEFERLPGTAVVHGDMRCASIAAASILAKVIRDDLMARLAVRYPGYGWEENAGYGTPSH 193

Query: 185 QQVIKEKGPSCIHRLTF 201
           ++ I+E G +  HR +F
Sbjct: 194 RRAIRELGSTPFHRRSF 210


>gi|148380399|ref|YP_001254940.1| ribonuclease HII [Clostridium botulinum A str. ATCC 3502]
 gi|168180678|ref|ZP_02615342.1| ribonuclease HII [Clostridium botulinum NCTC 2916]
 gi|189043580|sp|A5I4L9|RNH2_CLOBH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|148289883|emb|CAL83991.1| putative ribonuclease HII [Clostridium botulinum A str. ATCC 3502]
 gi|182668376|gb|EDT80355.1| ribonuclease HII [Clostridium botulinum NCTC 2916]
          Length = 269

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 118/188 (62%), Gaps = 6/188 (3%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEK 74
           R  N + +AG+DEVGRG LAGP+V AA++LD N       F I DSKK+S KKREEL   
Sbjct: 78  RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREELDII 137

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI  +I+   ++ ID+  I  +  + +  AVE L+V P   L DG ++  +L  + 
Sbjct: 138 IREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAVK-NLNIRN 196

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGDS S+SIA++SIIAKV RD +M+   K    YGF+ + GY T +H Q IK+ GP
Sbjct: 197 EFIIKGDSKSISIASSSIIAKVYRDSMMKEYSKGLNMYGFNHNAGYGTEEHVQAIKKHGP 256

Query: 194 SCIHRLTF 201
           S IHR++F
Sbjct: 257 SKIHRMSF 264


>gi|319760422|ref|YP_004124360.1| ribonuclease HII [Candidatus Blochmannia vafer str. BVAF]
 gi|318039136|gb|ADV33686.1| ribonuclease HII [Candidatus Blochmannia vafer str. BVAF]
          Length = 208

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/190 (44%), Positives = 114/190 (60%), Gaps = 10/190 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN-----DSKKISHKKREELYEKITSSAI 80
           +AG+DEVG GAL GP++ +A+I  P N    IN     DSK ++ KKR +LY+ I   ++
Sbjct: 17  IAGVDEVGCGALMGPIIASAVIFPPFNNQKKINVAGLVDSKTLNSKKRVKLYKDIQKYSL 76

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVI 137
             SI   S   IDK N+ KA L A+  AV NL +IP   L+DG   P  +++  Q F  I
Sbjct: 77  SWSIGVVSVSEIDKLNVLKARLLAMKRAVLNLSIIPDLILVDGNKAPFFKNIFYQCF--I 134

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGD     I+AASIIAKV RDR M I + +YP YG + + GYPT  H Q +   GP+  H
Sbjct: 135 KGDVYIPIISAASIIAKVIRDRAMIILNTQYPQYGLNHNKGYPTNFHIQQLYFYGPTIYH 194

Query: 198 RLTFRPLRNL 207
           R TF P++++
Sbjct: 195 RKTFSPVKHM 204


>gi|269469003|gb|EEZ80571.1| Ribonuclease HII [uncultured SUP05 cluster bacterium]
          Length = 171

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/172 (44%), Positives = 102/172 (59%), Gaps = 7/172 (4%)

Query: 39  GPVVVAAIILDPN--NIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNI 96
           G V+  A+IL PN  N+P  + DSKK+S KKRE LY  IT     ++  A+ Q +D+ NI
Sbjct: 2   GSVIAGAVIL-PNDFNLP-ELTDSKKLSEKKREILYTLITQQCQWAVGEANTQEVDEINI 59

Query: 97  HKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVT 156
            +AT+ A+  AVENL       L+DG   P+   C A  +IKGD     I+AASIIAKVT
Sbjct: 60  LQATMLAMRRAVENLNSQYDQVLVDGNRCPKLKNCTA--IIKGDLTEPVISAASIIAKVT 117

Query: 157 RDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHRLTFRPLRNL 207
           RDR M +   +YP+YGF  H GY T  H Q +++ G     HR +F P+R L
Sbjct: 118 RDRQMILLDAQYPEYGFAQHKGYGTRVHLQALEKFGAIKGQHRYSFAPVRKL 169


>gi|330997790|ref|ZP_08321625.1| ribonuclease HII [Paraprevotella xylaniphila YIT 11841]
 gi|329569678|gb|EGG51443.1| ribonuclease HII [Paraprevotella xylaniphila YIT 11841]
          Length = 207

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/181 (40%), Positives = 107/181 (59%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG LAG V  AA+IL  +     +NDSK++S KKR  L  +I   A+  ++  
Sbjct: 13  AGLDEAGRGCLAGAVYAAAVILPKDYRNEMLNDSKQLSEKKRYLLRGQIERDALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143
            + Q ID+ NI  A+  A++ A++ L V P + L+DG       DLP     V+KGD   
Sbjct: 73  VTPQEIDEINILNASFLAMHRALDQLAVRPEALLVDGNRFKPYRDLPHTT--VVKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           +SIAAASI+AK  RD  M   H++YP Y +DS+ GYP   H++ I+  G +  HR+++  
Sbjct: 131 MSIAAASILAKTYRDDYMLRLHEEYPVYHWDSNKGYPAKAHREAIRRHGVTPYHRMSYNL 190

Query: 204 L 204
           L
Sbjct: 191 L 191


>gi|68171965|ref|ZP_00545273.1| Ribonuclease H [Ehrlichia chaffeensis str. Sapulpa]
 gi|67998612|gb|EAM85357.1| Ribonuclease H [Ehrlichia chaffeensis str. Sapulpa]
          Length = 209

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/193 (43%), Positives = 117/193 (60%), Gaps = 4/193 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREE 70
           E+  ++  K+   + G+DEVG G+LAGPVV AA+      N+I + I DSKK++ KKR E
Sbjct: 9   EISKLINNKHC-TIVGVDEVGYGSLAGPVVSAAVFFPKHDNHITYNIQDSKKLTPKKRLE 67

Query: 71  LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +Y  IT     SI  A    ID++NI  AT  A+  A+  L       ++DG  +PE LP
Sbjct: 68  IYNIITPMVKWSIGLAEVHEIDQYNILNATHIAMQRALRGLNSNINYVIVDGNKVPE-LP 126

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             A AV+ GD+IS+SIAAASIIAKVTRD+LM   H ++P Y ++ + GY T  H + + +
Sbjct: 127 WNAKAVVDGDNISISIAAASIIAKVTRDKLMETLHIQFPQYNWNKNKGYGTKHHLESLHK 186

Query: 191 KGPSCIHRLTFRP 203
            G +  HR TF P
Sbjct: 187 YGKTIHHRNTFAP 199


>gi|227488611|ref|ZP_03918927.1| ribonuclease HII [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227543214|ref|ZP_03973263.1| ribonuclease HII [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227091505|gb|EEI26817.1| ribonuclease HII [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181023|gb|EEI61995.1| ribonuclease HII [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 208

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/195 (38%), Positives = 106/195 (54%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREELY 72
           E  + +  + PVAG+DE GRGA AGP+ +AA IL    IP    ++DSKK++  +R  L+
Sbjct: 5   EVALAKAGLGPVAGVDEAGRGACAGPITIAACILPDQFIPELELLDDSKKLTPARRAHLF 64

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   AI   I   S   ID+  I  A +  +  AV  L V P   L D   +P     
Sbjct: 65  PLIKRHAIAWHIVHISAHDIDERGITDANISGMRRAVGGLAVRPGYVLTDAWWVP-GFAQ 123

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
            +  VI GD+ +  IAAAS++AK +RD++M     +YP YGF  H GY TAKH   ++  
Sbjct: 124 PSLPVIGGDATARCIAAASVLAKYSRDQIMIDYDAQYPGYGFAGHKGYGTAKHMDAVRHH 183

Query: 192 GPSCIHRLTFRPLRN 206
           G S IHR ++  +RN
Sbjct: 184 GASPIHRYSYSNVRN 198


>gi|303234893|ref|ZP_07321518.1| ribonuclease HII [Finegoldia magna BVS033A4]
 gi|302494011|gb|EFL53792.1| ribonuclease HII [Finegoldia magna BVS033A4]
          Length = 207

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/190 (42%), Positives = 109/190 (57%), Gaps = 12/190 (6%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
           + GIDEVGRG LAGPVV  AII+  N  I  G+ DSKK+S KKR +  + I + A+  S+
Sbjct: 14  ICGIDEVGRGPLAGPVVTCAIIMPKNCEIIDGVTDSKKLSEKKRIKFKDMILNQALAYSV 73

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALIDGRSIPEDLPCQAFAVI 137
           +      ID+ NI +AT  ++  AVE+L+      + P   +ID   I  D+   +F  +
Sbjct: 74  NFVDQGVIDEINIKQATRLSMKRAVESLKTKDNKFIKPDLIVIDAEEIDTDIKQMSF--V 131

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGD     I+ ASI+AKV RD  M+     YP YGF+ H GY T  H+++I E G   +H
Sbjct: 132 KGDEKLYPISCASIVAKVIRDEYMKDMAVIYPQYGFEKHKGYGTKLHREMILEHGECPLH 191

Query: 198 RLTFRPLRNL 207
           R TF  LR L
Sbjct: 192 RKTF--LRKL 199


>gi|224025200|ref|ZP_03643566.1| hypothetical protein BACCOPRO_01934 [Bacteroides coprophilus DSM
           18228]
 gi|224018436|gb|EEF76434.1| hypothetical protein BACCOPRO_01934 [Bacteroides coprophilus DSM
           18228]
          Length = 200

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/176 (40%), Positives = 105/176 (59%), Gaps = 1/176 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSKK++ K+R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPHDFRNELLNDSKKLTEKQRYALREVIEREALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + ID+ NI  A+  A++ A++ L++ P+  LIDG    +        ++KGD   LS
Sbjct: 73  VTPEEIDRINILNASFLAMHRAIDQLKIRPQHLLIDGNRFNKYADIPHTTIVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           IAAASI+AK  RD  M    ++YP Y + S+ GYPT KH++ IK+ G +  HR++F
Sbjct: 133 IAAASILAKTYRDDYMNRLAEEYPAYDWKSNKGYPTVKHREAIKKWGVTPYHRMSF 188


>gi|302380879|ref|ZP_07269341.1| ribonuclease HII [Finegoldia magna ACS-171-V-Col3]
 gi|302311257|gb|EFK93276.1| ribonuclease HII [Finegoldia magna ACS-171-V-Col3]
          Length = 207

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/190 (42%), Positives = 108/190 (56%), Gaps = 12/190 (6%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
           + GIDEVGRG LAGPVV  AII+  N  I  G+ DSKK+S KKR +  + I + A+  S+
Sbjct: 14  ICGIDEVGRGPLAGPVVTCAIIMPKNCEIIEGVTDSKKLSEKKRIKFKDMILNQALAYSV 73

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALIDGRSIPEDLPCQAFAVI 137
                  ID+ NI +AT  ++  AVE+L+      + P   +ID   I  D+   +F  +
Sbjct: 74  DFVDQGVIDEINIKQATRLSMKKAVESLKTKDNKFIKPDLIVIDAEEIDTDIKQMSF--V 131

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGD     I+ ASI+AKV RD  M+     YP YGF+ H GY T  H+++I E G   +H
Sbjct: 132 KGDEKLYPISCASIVAKVIRDEYMKEMAVIYPQYGFEKHKGYGTKLHREMILEYGECPLH 191

Query: 198 RLTFRPLRNL 207
           R TF  LR L
Sbjct: 192 RKTF--LRKL 199


>gi|149277087|ref|ZP_01883229.1| ribonuclease HII [Pedobacter sp. BAL39]
 gi|149231964|gb|EDM37341.1| ribonuclease HII [Pedobacter sp. BAL39]
          Length = 203

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/176 (42%), Positives = 99/176 (56%), Gaps = 1/176 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL P+ IP  + DSKK++HK+R  L   I   A+  +++S
Sbjct: 13  AGCDEAGRGCLAGPVFAAAVILPPDFIPGELTDSKKLNHKQRAALRIIIEQEALAWAVAS 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
             H+ IDK NI  A+  A++ A+E L + P    IDG             ++KGD   L+
Sbjct: 73  VDHEEIDKINILNASFLAMHRAIEQLSLKPEYLSIDGNRFKAYTGIPHSCIVKGDGKYLN 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           IAAASI+AK  RD  M     +YP Y +  + GYPT  H++     G S  HR TF
Sbjct: 133 IAAASILAKTHRDEHMEQLALEYPVYQWAQNKGYPTIVHRKAALAHGLSPYHRKTF 188


>gi|225849921|ref|YP_002730155.1| ribonuclease HII [Persephonella marina EX-H1]
 gi|225645751|gb|ACO03937.1| ribonuclease HII [Persephonella marina EX-H1]
          Length = 198

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/189 (41%), Positives = 108/189 (57%), Gaps = 10/189 (5%)

Query: 20  EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           EK +W      +AGIDE GRG +AGPVV A++I   N  PF   DSKK++ K+REEL+ +
Sbjct: 5   EKELWSKGFKNIAGIDEAGRGPVAGPVVAASVIFPQNIEPFIFKDSKKLTKKQREELFTQ 64

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   A+ + I    +  ID+ NI+ AT  A+  A+E++       + D        P   
Sbjct: 65  IKERALAVGIGIVDNSVIDRINIYNATKLAMKRAIEDMNHNFDYLITDYVKFD---PYPH 121

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++ K D  SLS+AAASIIAKV RDR+M    K YP + FD H GY T  H++ I   G 
Sbjct: 122 ISLKKADEKSLSVAAASIIAKVFRDRIMEEFSKYYP-HSFDKHKGYLTELHREEIIRYGL 180

Query: 194 SCIHRLTFR 202
           + IHR +F+
Sbjct: 181 TPIHRKSFK 189


>gi|125624006|ref|YP_001032489.1| ribonuclease HII [Lactococcus lactis subsp. cremoris MG1363]
 gi|146345506|sp|O30415|RNH2_LACLM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|124492814|emb|CAL97769.1| RnhB protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070776|gb|ADJ60176.1| ribonuclease HII [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 257

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/197 (41%), Positives = 118/197 (59%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            E E  +  + +  +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKK+   K   +
Sbjct: 59  LEFEKELYSQEIELIAGIDEVGRGPLAGPVVTAAVILPKNCKIRGLNDSKKVPKSKHHAI 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
             +I   A+ I +     + ID+ NI++AT  A+  AV  L + P   LID   +  DLP
Sbjct: 119 LSEIQEKALAIGVGIVDAEKIDEVNIYEATKIAMIQAVSKLSLKPEHLLIDAMVL--DLP 176

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +I GD+ S SIAAASI+AKVTRD +M+    ++P+Y F+ + GY TAKH   + +
Sbjct: 177 IAQTKIIHGDARSASIAAASIVAKVTRDEMMKDFALEFPEYDFEHNAGYGTAKHLAALTK 236

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR ++ P++++
Sbjct: 237 YGITRIHRKSYEPIKSM 253


>gi|33866676|ref|NP_898235.1| ribonuclease HII [Synechococcus sp. WH 8102]
 gi|33633454|emb|CAE08659.1| ribonuclease HII [Synechococcus sp. WH 8102]
          Length = 239

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/186 (38%), Positives = 107/186 (57%), Gaps = 15/186 (8%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA-I 80
           VAG+DEVGRG L GPV   A++L+  N       G+ DSK++S ++R +L   I   A  
Sbjct: 53  VAGVDEVGRGCLFGPVFAGAVVLEAANASRLQQEGLTDSKRLSARRRGDLVPLIEHEAEA 112

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF-----A 135
             +  +S + ID+  I  AT  A+  A++ L   P   L+DG     +LP + +     +
Sbjct: 113 WGLGQSSTREIDRLGIRPATELAMLRALQRLPNRPELVLVDG-----NLPLRPWTGEQRS 167

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           ++ GD  SL+IAAAS+IAK  RD LM+   +++P YG + H GY TA H+  + + GPS 
Sbjct: 168 IVAGDQHSLAIAAASVIAKQCRDALMQRLSQRFPGYGLERHAGYGTALHRAALLDLGPSA 227

Query: 196 IHRLTF 201
           +HR +F
Sbjct: 228 LHRRSF 233


>gi|88807950|ref|ZP_01123461.1| Ribonuclease HII and HIII [Synechococcus sp. WH 7805]
 gi|88787989|gb|EAR19145.1| Ribonuclease HII and HIII [Synechococcus sp. WH 7805]
          Length = 194

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/186 (38%), Positives = 106/186 (56%), Gaps = 15/186 (8%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA-I 80
           + G+DEVGRG L GPV  AA+ L  +        G+ DSK +S ++R +L  +I + A  
Sbjct: 2   IVGVDEVGRGCLFGPVFAAAVSLTESAAAELTALGLTDSKALSARRRVDLVPQIQAKASA 61

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA----- 135
            ++   S + ID H I  AT  A+  A++ L   P   L+DG      LP + +A     
Sbjct: 62  WALGQGSAREIDAHGIRVATELAMLRALQKLPKHPELVLVDG-----VLPLRLWAGDQRS 116

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           +++GDS   SIAAAS++AKVTRD LM+   +++P YG + H GY T  H+Q +   GP+ 
Sbjct: 117 IVRGDSKEASIAAASVLAKVTRDGLMQRLAERFPGYGLERHAGYGTVLHRQSLLAAGPTS 176

Query: 196 IHRLTF 201
           +HR +F
Sbjct: 177 MHRRSF 182


>gi|39932283|sp|Q7U4C6|RNH2_SYNPX RecName: Full=Ribonuclease HII; Short=RNase HII
          Length = 224

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/181 (38%), Positives = 103/181 (56%), Gaps = 5/181 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA-I 80
           VAG+DEVGRG L GPV   A++L+  N       G+ DSK++S ++R +L   I   A  
Sbjct: 38  VAGVDEVGRGCLFGPVFAGAVVLEAANASRLQQEGLTDSKRLSARRRGDLVPLIEHEAEA 97

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             +  +S + ID+  I  AT  A+  A++ L   P   L+DG         +  +++ GD
Sbjct: 98  WGLGQSSTREIDRLGIRPATELAMLRALQRLPNRPELVLVDGNLPLRPWTGEQRSIVAGD 157

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
             SL+IAAAS+IAK  RD LM+   +++P YG + H GY TA H+  + + GPS +HR +
Sbjct: 158 QHSLAIAAASVIAKQCRDALMQRLSQRFPGYGLERHAGYGTALHRAALLDLGPSALHRRS 217

Query: 201 F 201
           F
Sbjct: 218 F 218


>gi|329114181|ref|ZP_08242943.1| Ribonuclease HII [Acetobacter pomorum DM001]
 gi|326696257|gb|EGE47936.1| Ribonuclease HII [Acetobacter pomorum DM001]
          Length = 215

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/204 (43%), Positives = 120/204 (58%), Gaps = 10/204 (4%)

Query: 12  FELEAM---VREKNMWP-VAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKIS 64
            E EAM    RE+ +   VAG+DEVGRG LAGPVV AA++     P ++   I+DSKK+ 
Sbjct: 1   MEREAMPDFTREQQLGGRVAGVDEVGRGPLAGPVVAAAVVFGAGVPADLAAVIDDSKKLK 60

Query: 65  HKKREELYEKI--TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
              RE + E++       I I +AS   IDK NIH A   A+  AV  L  +P   L+DG
Sbjct: 61  PAVREAIAERLPQVPGIEIGIGAASTAEIDKLNIHHAAHLAMQRAVGRLPRLPDHVLVDG 120

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
             +P D  C A A++ GD +SLSIAAASI+AKV RDR M     ++PDYG++ + GY TA
Sbjct: 121 NKLP-DFGCAAQAIVGGDRVSLSIAAASIVAKVVRDRAMARLDARWPDYGWEKNAGYGTA 179

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRN 206
            H++ +   G +  HR TF  +R 
Sbjct: 180 VHRKALISVGITPHHRKTFGTVRR 203


>gi|150016066|ref|YP_001308320.1| ribonuclease HII [Clostridium beijerinckii NCIMB 8052]
 gi|189043579|sp|A6LSN4|RNH2_CLOB8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|149902531|gb|ABR33364.1| Ribonuclease H [Clostridium beijerinckii NCIMB 8052]
          Length = 270

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/216 (41%), Positives = 128/216 (59%), Gaps = 20/216 (9%)

Query: 5   SIPERPHFELEAMVRE----KNMWP----------VAGIDEVGRGALAGPVVVAAIILDP 50
           S+ E+   +LE+ + E    K M+           +AG+DEVGRG LAGP+V  ++ILD 
Sbjct: 51  SLKEKIEKDLESYLNEVKRVKTMYEFDKSFGSYRYIAGVDEVGRGPLAGPIVACSVILDL 110

Query: 51  N----NIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIY 105
           N    ++   INDSKK+   KREEL E I   A+   I+ +S++ ID+  I  A      
Sbjct: 111 NVLEKDLILYINDSKKVKEHKREELSEIIKEKALSYQIAVSSNKEIDEKGIAFANNKVFL 170

Query: 106 HAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165
            +  +L + P   L DG  I  ++  +  +VIKGD+ S SIAAASI+AKV RDRLM+   
Sbjct: 171 ESCNSLSIKPDLVLSDGYLIK-NIGIENKSVIKGDTKSASIAAASIVAKVYRDRLMKEYA 229

Query: 166 KKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           KKYP Y F+++VGY T+KH + +K+ G S IHR +F
Sbjct: 230 KKYPHYDFENNVGYGTSKHIEGLKKYGKSDIHRNSF 265


>gi|325285587|ref|YP_004261377.1| Ribonuclease H [Cellulophaga lytica DSM 7489]
 gi|324321041|gb|ADY28506.1| Ribonuclease H [Cellulophaga lytica DSM 7489]
          Length = 208

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/181 (41%), Positives = 103/181 (56%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86
            G DE GRG LAGPV  AAIIL  N     +NDSK +S KKRE L   I   AI      
Sbjct: 22  TGTDEAGRGCLAGPVTAAAIILPENFKNDILNDSKLLSEKKRELLKPIIEEQAICY--GV 79

Query: 87  SHQY---IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +H Y   ID+ NI  A++ A++ +++ L   P   ++DG         +   +IKGDS  
Sbjct: 80  THIYPKKIDEINILNASILAMHKSIDKLTTKPEFIIVDGNRFKPYKKIKHECIIKGDSKF 139

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAAS++AK  RD  M   HK++P Y +  + GYPT +H++ I+E G +  HR +F+ 
Sbjct: 140 LSIAAASVLAKTYRDAYMEKIHKEFPMYNWKKNKGYPTKEHREAIREFGLTKYHRKSFKQ 199

Query: 204 L 204
           L
Sbjct: 200 L 200


>gi|238796623|ref|ZP_04640130.1| Ribonuclease HII [Yersinia mollaretii ATCC 43969]
 gi|238719601|gb|EEQ11410.1| Ribonuclease HII [Yersinia mollaretii ATCC 43969]
          Length = 166

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/163 (43%), Positives = 98/163 (60%), Gaps = 2/163 (1%)

Query: 46  IILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAI 104
           +ILDP     G+ DSKK+S K+R  LY++IT  A+  S+  A  + ID  NI  AT+ A+
Sbjct: 1   MILDPKRPIVGLADSKKLSEKRRLSLYDEITDKALSWSLGRAEPEEIDSLNILHATMLAM 60

Query: 105 YHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA 164
             AV  L + P   LIDG   P+ L   + AV+KGDS    I+AASI+AKVTRDR M   
Sbjct: 61  QRAVAGLHITPDYVLIDGNRCPK-LAMPSLAVVKGDSRVAEISAASILAKVTRDREMTEL 119

Query: 165 HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
            + +P+YGF  H GYPTA H + +   G +  HR +F P++ +
Sbjct: 120 DRDFPEYGFAQHKGYPTAVHLEKLYAFGATEHHRRSFGPVKRV 162


>gi|118466028|ref|YP_882929.1| ribonuclease HII [Mycobacterium avium 104]
 gi|189043629|sp|A0QJ41|RNH2_MYCA1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|118167315|gb|ABK68212.1| ribonuclease HII [Mycobacterium avium 104]
          Length = 230

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/201 (38%), Positives = 113/201 (56%), Gaps = 10/201 (4%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE+ +    + PVAG+DEVGRGA AGP+VVAA +L P  +     ++DSKK++   RE L
Sbjct: 11  LESALYRSGLGPVAGVDEVGRGACAGPLVVAACVLGPGKLESLAALDDSKKLTESVRERL 70

Query: 72  YEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           +  I   A    ++ I  A    +D+  +H A ++ +  AV  L + P   L DG  +P 
Sbjct: 71  FPVIRRYALAYHVVFIPPAE---VDRRGVHVANIEGMRRAVAGLSLRPGYVLSDGFRVP- 126

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            L   +  VI GD+++  IAAAS++AKV+RDRLM     ++P YGF  H GY T  H   
Sbjct: 127 GLAVPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMDAEHPGYGFADHKGYSTPAHSAA 186

Query: 188 IKEKGPSCIHRLTFRPLRNLS 208
           +   GP   HR +F  +R ++
Sbjct: 187 LARLGPCPQHRHSFINVRRVA 207


>gi|328949830|ref|YP_004367165.1| Ribonuclease H [Marinithermus hydrothermalis DSM 14884]
 gi|328450154|gb|AEB11055.1| Ribonuclease H [Marinithermus hydrothermalis DSM 14884]
          Length = 199

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 103/180 (57%), Gaps = 5/180 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           V G+DE GRGALAGP+VV A+IL P   PF   DSK    K RE L  ++  +A+  ++ 
Sbjct: 15  VCGVDEAGRGALAGPIVVGAVILPPGPHPF--RDSKACPPKTREALLARLERTALAYAVG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    +D   + KAT  A + A+  L+  P   + D   +  DLP  A  V K +  S+
Sbjct: 73  VAEAGEVDALGVLKATHLAAHRALAALEARPDHLITDYLFLETDLPLTA--VPKAEEKSV 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           ++AAASI+AKVTRDR+MR   + YP YGF  H GY T  H + +   GPS +HR  F P+
Sbjct: 131 TVAAASILAKVTRDRIMRELDRAYPGYGFAQHKGYGTRAHLEALARLGPSPVHRRRFAPV 190


>gi|88658621|ref|YP_507735.1| ribonuclease HII [Ehrlichia chaffeensis str. Arkansas]
 gi|123492872|sp|Q2GFP8|RNH2_EHRCR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|88600078|gb|ABD45547.1| ribonuclease HII [Ehrlichia chaffeensis str. Arkansas]
          Length = 209

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/198 (42%), Positives = 119/198 (60%), Gaps = 4/198 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREE 70
           E+  ++  K+   + G+DEVG G+LAGPVV AA+      N+I + I DSKK++ KKR E
Sbjct: 9   EISKLINNKHC-TIVGVDEVGYGSLAGPVVSAAVFFPKHDNHITYNIQDSKKLTPKKRLE 67

Query: 71  LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +Y  IT     SI  A    ID++NI  AT  A+  A+  L       ++DG  +PE LP
Sbjct: 68  IYNIITPMVKWSIGLAEVHEIDQYNILNATHIAMQRALRGLNSNIDYVIVDGNKVPE-LP 126

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             A AV+ GD+IS+SIAAASIIAKVTRD+LM   H ++P Y ++ + GY T  H + + +
Sbjct: 127 WNAKAVVDGDNISISIAAASIIAKVTRDKLMETLHIQFPQYNWNKNKGYGTKHHLESLHK 186

Query: 191 KGPSCIHRLTFRPLRNLS 208
            G +  HR TF P   ++
Sbjct: 187 YGKTIHHRNTFAPASGIT 204


>gi|332298244|ref|YP_004440166.1| Ribonuclease H [Treponema brennaborense DSM 12168]
 gi|332181347|gb|AEE17035.1| Ribonuclease H [Treponema brennaborense DSM 12168]
          Length = 197

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/192 (39%), Positives = 106/192 (55%), Gaps = 18/192 (9%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           + G+DE GRG LAGPV   A+IL P+     +NDSKK+S K+R  L   I   A   ++ 
Sbjct: 6   ICGLDEAGRGPLAGPVSAGAVILPPDFPVELLNDSKKLSEKRRAVLESLIKERACWGVAL 65

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENL-QVIPR--------------SALIDGRSIPE-DL 129
             H  ID+ NI +A+L A+  A + + Q +P               SA+ DG   P+  +
Sbjct: 66  VDHTVIDEINILQASLLAMKLAFDQMRQKLPAFCASRFGSCAQPLVSAIADGTFCPDIRV 125

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           PC   A  K D+   ++ AASI+AK  RDR+M    + YP YG++ H GYPT  H+++ K
Sbjct: 126 PC--VARPKADATESAVMAASILAKTERDRVMIAYGQLYPQYGYEKHKGYPTKAHRELCK 183

Query: 190 EKGPSCIHRLTF 201
             GPS I RLTF
Sbjct: 184 LLGPSPIQRLTF 195


>gi|253315602|ref|ZP_04838815.1| ribonuclease HII [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
          Length = 232

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 104/168 (61%), Gaps = 4/168 (2%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +++E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPITK 115

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174
             LP    ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+
Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFE 221


>gi|325299103|ref|YP_004259020.1| Ribonuclease H [Bacteroides salanitronis DSM 18170]
 gi|324318656|gb|ADY36547.1| Ribonuclease H [Bacteroides salanitronis DSM 18170]
          Length = 200

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/179 (41%), Positives = 101/179 (56%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL        +NDSKK++ ++R +L   I S A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPSGYQNELLNDSKKLTERQRYKLRNIIESDALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S   ID+ NI  A+  A++ AVE L V P+  LIDG             V+KGD   LS
Sbjct: 73  VSPAEIDQINILNASFLAMHRAVEQLAVRPQHLLIDGNRFNPYPGIPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H +YP Y +  + GYPT KH++ I+  G +  HR++F  L
Sbjct: 133 IAAASILAKTYRDDYMNCLHDEYPLYDWKGNKGYPTRKHREAIRLYGTTPYHRMSFNLL 191


>gi|262167732|ref|ZP_06035434.1| ribonuclease HII [Vibrio cholerae RC27]
 gi|262023797|gb|EEY42496.1| ribonuclease HII [Vibrio cholerae RC27]
          Length = 157

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/152 (46%), Positives = 95/152 (62%), Gaps = 2/152 (1%)

Query: 55  FGINDSKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQV 113
            G+NDSKK+S KKR  L+ +I   A+  ++   S Q ID+ NI +AT+ A+  AV  L++
Sbjct: 1   MGLNDSKKLSEKKRLALFPEIQVKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRI 60

Query: 114 IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173
            P   LIDG  IP+ LP +A AV+KGD     I+AASIIAKV RD+ M    K+YP +GF
Sbjct: 61  QPDLVLIDGNKIPK-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGF 119

Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
             H GYPTA H   I++ G    HR +F P++
Sbjct: 120 AKHKGYPTAAHFAAIEQHGVIEQHRKSFGPVK 151


>gi|33241107|ref|NP_876049.1| ribonuclease HII [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|39932302|sp|Q7VA11|RNH2_PROMA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|33238637|gb|AAQ00702.1| Ribonuclease HII [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 191

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/183 (43%), Positives = 102/183 (55%), Gaps = 5/183 (2%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS-S 78
           +  AG+DEVGRGAL GPV   A+ILD       I  G+ DSKK+S  KR  L   I   S
Sbjct: 4   YTAAGLDEVGRGALFGPVFAGAVILDNQAEDQLIDAGLKDSKKLSALKRSNLVPLIKKIS 63

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
              +I  +S + ID   I  AT  A+  AV  L+  P   LIDG         +   VIK
Sbjct: 64  HCWAIGQSSAREIDLLGIRNATEKAMIRAVHRLEKQPDVLLIDGCLNLRLWHGEQKTVIK 123

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           G+ +  SIAAAS++AKV RD L++   +KYP YG + HVGY TA H+  I + G + +HR
Sbjct: 124 GEDLYPSIAAASVLAKVARDDLIKRMAEKYPQYGLEKHVGYGTALHRAAISKFGKTKLHR 183

Query: 199 LTF 201
            TF
Sbjct: 184 KTF 186


>gi|317504209|ref|ZP_07962202.1| ribonuclease HII [Prevotella salivae DSM 15606]
 gi|315664660|gb|EFV04334.1| ribonuclease HII [Prevotella salivae DSM 15606]
          Length = 220

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/193 (38%), Positives = 113/193 (58%), Gaps = 11/193 (5%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG VV AA+IL  + +   +NDSKK++ K+R  L E+I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGNVVAAAVILPTDYVNPLLNDSKKLTAKQRYALREQIEHEALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS-----IPEDLPCQA-----FA 135
           A+ + ID  NI  A+  A++ A++ L++ P + ++DG       I + LP +        
Sbjct: 73  ATPEEIDNINILHASFLAMHRALDQLKLRPEAVIVDGNHFDPYVIGKGLPDEGKILPHTC 132

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           ++KGD   LSIAAASI+AK  RD  M    +++P YG++ + GYPT  H Q I++ G   
Sbjct: 133 IVKGDGKYLSIAAASILAKTYRDDYMTEQAERFPFYGWEKNKGYPTKTHYQGIEKHGLCA 192

Query: 196 IHRLTFRPLRNLS 208
           +HR +F    NLS
Sbjct: 193 LHRKSFNTHPNLS 205


>gi|41409068|ref|NP_961904.1| ribonuclease HII [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|81413495|sp|Q73VP3|RNH2_MYCPA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|41397427|gb|AAS05287.1| RnhB [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 239

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/201 (38%), Positives = 113/201 (56%), Gaps = 10/201 (4%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE+ +    + PVAG+DEVGRGA AGP+VVAA +L P  +     ++DSKK++   RE L
Sbjct: 20  LESALYRSGLGPVAGVDEVGRGACAGPLVVAACVLGPGKLESLAALDDSKKLTESVRERL 79

Query: 72  YEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           +  I   A    ++ I  A    +D+  +H A ++ +  AV  L + P   L DG  +P 
Sbjct: 80  FPVIRRYALAYHVVFIPPAE---VDRRGVHVANIEGMRRAVAGLSLRPGYVLSDGFRVP- 135

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            L   +  VI GD+++  IAAAS++AKV+RDRLM     ++P YGF  H GY T  H   
Sbjct: 136 GLAVPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMDAEHPGYGFADHKGYSTPAHSAA 195

Query: 188 IKEKGPSCIHRLTFRPLRNLS 208
           +   GP   HR +F  +R ++
Sbjct: 196 LARLGPCPQHRHSFINVRRVA 216


>gi|157737860|ref|YP_001490544.1| ribonuclease HII [Arcobacter butzleri RM4018]
 gi|189043562|sp|A8EVA1|RNH2_ARCB4 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157699714|gb|ABV67874.1| ribonuclease HII [Arcobacter butzleri RM4018]
          Length = 192

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/181 (41%), Positives = 103/181 (56%), Gaps = 6/181 (3%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82
           M  + GIDE GRG LAGP+VVA +IL  + +  G+NDSK +S KKRE+L+++I   +   
Sbjct: 1   MKNLCGIDEAGRGPLAGPLVVAGVILLEDIV--GLNDSKVLSEKKREKLFDEIKEKSKYH 58

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV-IKGDS 141
           I  +  + ID+  I      +I   +ENL+    S L+DG +   +   Q     IK D+
Sbjct: 59  IVFSDAKLIDEKGISFCLKSSILEIIENLKEFSNSFLMDGNT---NFGIQILQKEIKADA 115

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
               ++AASI+AKV+RDR M      YP Y F  H GY T  H + IKE G S IHR TF
Sbjct: 116 KYAQVSAASILAKVSRDRFMDEISPLYPKYDFHKHKGYGTKAHIEAIKEFGRSDIHRHTF 175

Query: 202 R 202
           +
Sbjct: 176 K 176


>gi|332638611|ref|ZP_08417474.1| ribonuclease HII [Weissella cibaria KACC 11862]
          Length = 254

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/195 (41%), Positives = 114/195 (58%), Gaps = 13/195 (6%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL---- 71
           E++ W     +AG+DEVGRG LAGPVV AA+++D       ++DSK++S K R  L    
Sbjct: 62  ERDAWSEGLVLAGVDEVGRGPLAGPVVAAAVVIDDQFDLLAVHDSKQLSEKARLALDAAI 121

Query: 72  YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            E++ + A   + +A+   ID  NI++A+  A+  A+ENL V     LID  ++  DLP 
Sbjct: 122 KEEVVAFAFGVVDAAA---IDTLNIYEASRVAMKQAIENLSVQVDGLLIDAMTV--DLPL 176

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +IKGD  S+SI AASI+AK  RD LM      YP YGFD + GY TA+H   +   
Sbjct: 177 PQEKLIKGDDRSISIGAASILAKNFRDDLMAAYAVDYPGYGFDHNAGYGTAEHLAGLAAY 236

Query: 192 GPSCIHRLTFRPLRN 206
           G + IHR TF P++ 
Sbjct: 237 GVTPIHRRTFAPVKQ 251


>gi|261855823|ref|YP_003263106.1| ribonuclease H [Halothiobacillus neapolitanus c2]
 gi|261836292|gb|ACX96059.1| Ribonuclease H [Halothiobacillus neapolitanus c2]
          Length = 216

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/214 (41%), Positives = 127/214 (59%), Gaps = 20/214 (9%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           +P+ P FE++           AG+DE GRG LAGPVV AAI+L P++   G+NDSKK++ 
Sbjct: 1   MPQLPLFEMQT-----PGLIYAGVDEAGRGPLAGPVVAAAIVLYPDDPIVGVNDSKKLTE 55

Query: 66  KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENL--------QVIPR 116
           ++R +L+++IT  A   +I+ A+   ID  NI +A+L A+  AV  +        Q + R
Sbjct: 56  RQRVKLFDEITRRAQSFAIAEATVHEIDTINILQASLLAMRRAVMAVYDQMKTQGQTLGR 115

Query: 117 SALIDGRSIPE-DLPCQAF----AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171
              +DG   P+ + P   F    A+I GD+   +IA+ASI+AKVTRDRLM    K YP Y
Sbjct: 116 IH-VDGNRCPDLNDPDAGFMECHALIGGDARDAAIASASILAKVTRDRLMLDMDKLYPQY 174

Query: 172 GFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
            F  H GYPTA+H+ ++ E G    HR +F P+R
Sbjct: 175 EFAKHKGYPTARHRDLLIEFGACPEHRSSFAPVR 208


>gi|262382588|ref|ZP_06075725.1| ribonuclease HII [Bacteroides sp. 2_1_33B]
 gi|262295466|gb|EEY83397.1| ribonuclease HII [Bacteroides sp. 2_1_33B]
          Length = 199

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/181 (44%), Positives = 106/181 (58%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK++S KKR +L   I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGAVFAAAVILPEDFKNQNLNDSKQLSEKKRYKLRPVIEREAIAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIP-EDLPCQAFAVIKGDSIS 143
            S + IDK NI KA+  A++ A+E L+V P   LIDG R  P  D+P     V+KGD   
Sbjct: 73  VSPEEIDKINILKASFLAMHRAIEQLKVRPEHLLIDGNRFTPYPDIPHTT--VVKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAAS++AK  RD  M     +YP Y +  + GYPT  H++ I+E G +  HR TF  
Sbjct: 131 LSIAAASVLAKTYRDDYMNELALEYPAYHWLDNKGYPTKAHREAIRECGITPYHRKTFTL 190

Query: 204 L 204
           L
Sbjct: 191 L 191


>gi|159904166|ref|YP_001551510.1| ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9211]
 gi|159889342|gb|ABX09556.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9211]
          Length = 196

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 114/182 (62%), Gaps = 7/182 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI- 80
           +AG+DEVG+G L GPV  AA++L+ ++    +  G+ DSK ++  KR +L+ +I   A  
Sbjct: 7   IAGLDEVGKGCLFGPVFAAAVMLNNSSENQLLDAGLKDSKLLTKAKRAQLFPEILKLADN 66

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL-PCQAFAVIKG 139
             I  AS + ID   I KAT  A+  A+  L + P   LIDG S+P  L       +I+G
Sbjct: 67  WGIGQASAKEIDSQGIRKATEKAMLRAIHKLTIHPSLLLIDG-SLPLRLWKGNQENLIRG 125

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           +S S +IAAAS+IAK +RD++++   K++P YG +++VGY T+ H++ + + GP+ +HR 
Sbjct: 126 ESKSPAIAAASVIAKESRDQVIKRLAKQFPGYGLETNVGYGTSNHRKALIKSGPTQLHRK 185

Query: 200 TF 201
           +F
Sbjct: 186 SF 187


>gi|332884737|gb|EGK04993.1| ribonuclease HII [Dysgonomonas mossii DSM 22836]
          Length = 199

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/178 (42%), Positives = 106/178 (59%), Gaps = 5/178 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  + I   +NDSK+++ K+R  L   I   A+  +I  
Sbjct: 13  AGCDEAGRGCLAGAVFAAAVILPKDFICEKLNDSKQLTEKERYALRPLIEEQALAWAIGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143
            + + ID+ NI  A+  A+  AV +L+  P+  LIDG      ED+P     V+KGD   
Sbjct: 73  VNQKEIDEINILNASFLAMQRAVASLKTRPQHLLIDGNRFRKYEDIPHTC--VVKGDGKL 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           L IAAAS++AK  RD  M   H+++P Y +D + GYPT KH++ I++ G +  HRLTF
Sbjct: 131 LPIAAASVLAKTYRDDYMLNLHREHPLYDWDHNKGYPTKKHREAIEKYGVTPYHRLTF 188


>gi|260772236|ref|ZP_05881152.1| ribonuclease HII [Vibrio metschnikovii CIP 69.14]
 gi|260611375|gb|EEX36578.1| ribonuclease HII [Vibrio metschnikovii CIP 69.14]
          Length = 170

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/166 (43%), Positives = 98/166 (59%), Gaps = 2/166 (1%)

Query: 41  VVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKA 99
           +V AA+ILDP     G+NDSKK+S KKR  L  +I + A+  S+   S   ID+ NI +A
Sbjct: 1   MVTAAVILDPAQPINGLNDSKKLSEKKRLALLPEIQAKALAWSVGRCSPSEIDQLNIFQA 60

Query: 100 TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR 159
           T+ A+  AV  L + P   L+DG  +P+ LP  A AV+KGD     I+AASIIAKV RD+
Sbjct: 61  TMLAMQRAVAGLAIQPDLVLVDGNKVPK-LPMAAEAVVKGDLRVAQISAASIIAKVVRDQ 119

Query: 160 LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
            M      YP +GF  H GYPT  H   I++ G    HR +F P++
Sbjct: 120 EMAELDLLYPQFGFAQHKGYPTKAHFAAIEQHGVIDQHRRSFSPVK 165


>gi|148243275|ref|YP_001228432.1| ribonuclease HII [Synechococcus sp. RCC307]
 gi|189043670|sp|A5GW20|RNH2_SYNR3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|147851585|emb|CAK29079.1| Ribonuclease HII [Synechococcus sp. RCC307]
          Length = 202

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/181 (40%), Positives = 102/181 (56%), Gaps = 5/181 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP---NNIP-FGINDSKKISHKKREELYEKITSSAI- 80
           VAG+DEVGRG L GPV  AA+IL     + +P  G+ DSK +S K+R+ L  +I S  + 
Sbjct: 3   VAGVDEVGRGCLFGPVWAAAVILKAEAFDRLPALGVTDSKALSAKRRQALLPEIHSHCLS 62

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             +  AS   ID   I  AT  A+  A++ L   P   L+DG       P     V+ GD
Sbjct: 63  YGLGQASAACIDAVGIRAATELAMCRALQRLCHSPDHVLVDGSLPLRPWPGSQETVVAGD 122

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S  L+IA ASI+AK  RD L++   +++P YG  SH GY T  H+  + + GP+ +HRL+
Sbjct: 123 SHCLAIACASILAKEGRDALLQRLDQRWPGYGLASHKGYGTKAHRTALLQWGPTPLHRLS 182

Query: 201 F 201
           F
Sbjct: 183 F 183


>gi|294661258|ref|YP_003573134.1| hypothetical protein Aasi_1724 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|227336409|gb|ACP21006.1| hypothetical protein Aasi_1724 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 196

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/177 (44%), Positives = 103/177 (58%), Gaps = 1/177 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG DEVGRG LAGPVV AA+IL      F + DSKK++ K+R E+   I   AI  +I 
Sbjct: 9   VAGCDEVGRGCLAGPVVAAAVILPLQYYYFLLKDSKKLTPKQRIEIAAIIKKEAIDWAIG 68

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A+ + ID+ NI  AT  A++ A+  L V P   LIDG         +   ++KGD    
Sbjct: 69  CATPEEIDQVNISNATHLAMHRAINKLIVKPELLLIDGNKFLPYPNIEHECIVKGDKKVN 128

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SIAAASII KV RD  M+   ++ P Y ++ ++GYPT +H Q I E G S  HR +F
Sbjct: 129 SIAAASIIDKVYRDEYMQELAEREPGYNWEINMGYPTKEHYQAIYELGMSFHHRKSF 185


>gi|326336306|ref|ZP_08202477.1| ribonuclease HII [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691480|gb|EGD33448.1| ribonuclease HII [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 197

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/181 (39%), Positives = 107/181 (59%), Gaps = 9/181 (4%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL  +     +NDSK+++ K+R EL   I   A+  ++  
Sbjct: 11  AGTDEAGRGCLAGPVTAAAVILPEDFYHPLLNDSKQMTEKQRNELRSIIEMQALSYAVVH 70

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLP--CQAFAVIKGDS 141
            S Q ID+ NI  A+++A+  A++ L + P   ++DG      +++P  CQ    +KGD+
Sbjct: 71  LSPQRIDQINILNASIEAMQQALDKLSLTPEFIVVDGNRFKPYKEIPYSCQ----VKGDA 126

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             + IAAAS++AK  RD  M   HK++P Y +D + GYPT +H+  I E G    HR TF
Sbjct: 127 RFMRIAAASVLAKTHRDAYMESLHKQFPMYHWDKNKGYPTREHRAAILEFGACEYHRKTF 186

Query: 202 R 202
           +
Sbjct: 187 Q 187


>gi|126654070|ref|ZP_01725896.1| ribonuclease HII [Bacillus sp. B14905]
 gi|126589450|gb|EAZ83597.1| ribonuclease HII [Bacillus sp. B14905]
          Length = 253

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/184 (42%), Positives = 113/184 (61%), Gaps = 4/184 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83
           +AG+DE GRG LAGPVV AA+IL  N+    G+NDSK++S  KR      I   AI   I
Sbjct: 70  IAGVDEAGRGPLAGPVVTAAVILPTNSEALVGLNDSKQLSKDKRNAFAALIKEHAISYFI 129

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
                Q ID+ NI++AT  ++  +VE+L   P   L+D  ++P  +P  +  +IKGD+ S
Sbjct: 130 HFQPAQQIDELNIYEATKQSMKASVESLSRKPDYVLVDAMTLPMAIPQDS--IIKGDAKS 187

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           L+IAAASI+AK  RD  M    K +P YGF  H GY T +H + ++E GP+  HR +F P
Sbjct: 188 LAIAAASILAKTARDDYMEQLDKDFPMYGFAQHAGYGTKQHLKALEEYGPTIHHRKSFEP 247

Query: 204 LRNL 207
           ++++
Sbjct: 248 VKSM 251


>gi|300858737|ref|YP_003783720.1| ribonuclease HII [Corynebacterium pseudotuberculosis FRC41]
 gi|300686191|gb|ADK29113.1| Ribonuclease HII [Corynebacterium pseudotuberculosis FRC41]
 gi|302206444|gb|ADL10786.1| Ribonuclease HII [Corynebacterium pseudotuberculosis C231]
 gi|302331000|gb|ADL21194.1| ribonuclease HII [Corynebacterium pseudotuberculosis 1002]
          Length = 240

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 102/191 (53%), Gaps = 4/191 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREEL 71
            E  + +  + PVAGIDE GRG+  GP+ +AA IL    I     + DSKK+S + REEL
Sbjct: 31  FEGTLEKWGLGPVAGIDEAGRGSCCGPITIAACILPSRPIAALATLTDSKKLSSRMREEL 90

Query: 72  YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y  I   A+  SI   S   ID++ I  A +  +  A+  L   P   LID   +P  L 
Sbjct: 91  YPLIKKYAVAWSILHISASEIDRYGIQHANISGMRRAIALLSKQPGYVLIDAMRVP-GLT 149

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
           C +  +I GD+ +  IAAAS++AK +RD LM    ++YP YG   H GY T  H   ++ 
Sbjct: 150 CPSLPIIGGDTAARCIAAASVLAKQSRDELMIDLDREYPGYGLGDHKGYGTKSHIDAVRR 209

Query: 191 KGPSCIHRLTF 201
            G +  HR ++
Sbjct: 210 HGGTPEHRYSY 220


>gi|294155904|ref|YP_003560288.1| ribonuclease HII [Mycoplasma crocodyli MP145]
 gi|291599929|gb|ADE19425.1| ribonuclease HII [Mycoplasma crocodyli MP145]
          Length = 204

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/186 (38%), Positives = 109/186 (58%), Gaps = 2/186 (1%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           K    + G+DE GRGALAGP+VVA +I   N     INDSKK++ K+RE L+ KI   AI
Sbjct: 10  KRFEKILGMDEAGRGALAGPLVVAGVIFPANYKNDEINDSKKLTSKQRENLFFKIQEDAI 69

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
              I   S+  +D+ N  KA++  +   + NL       +I           +   ++KG
Sbjct: 70  AYEIIELSNFEVDELNPKKASIVGM-EKIANLLADKYDVVITDFEKLNLQDKKQINLVKG 128

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D+IS+S+AAASI+AK  RD++MR  H KYP + +D + GY T  H + +++ G S  HRL
Sbjct: 129 DTISISVAAASILAKHYRDQVMRKLHLKYPMFSWDKNKGYGTKLHLEGLRKNGVSPFHRL 188

Query: 200 TFRPLR 205
           +++P++
Sbjct: 189 SYKPVK 194


>gi|302831956|ref|XP_002947543.1| hypothetical protein VOLCADRAFT_87765 [Volvox carteri f.
           nagariensis]
 gi|300267407|gb|EFJ51591.1| hypothetical protein VOLCADRAFT_87765 [Volvox carteri f.
           nagariensis]
          Length = 678

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 82/247 (33%), Positives = 121/247 (48%), Gaps = 48/247 (19%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALA----------------GPVVVAAIILDPNNI 53
           P  ++E  +R +    V G DE GRG LA                G + V A    P   
Sbjct: 226 PTQDMETQLRAQGYLAVGGADEAGRGPLAGPVVAAVVVLPPRSDPGLMGVGAEGDAPWQP 285

Query: 54  PFGINDSKKISHKKREELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENL 111
           P G+NDSK +S ++RE +YE++T+   +  ++S   H+ ID+ NI +A L A+  +   L
Sbjct: 286 PPGLNDSKAMSEEEREAVYEQLTTDPRVKWAVSVVEHEEIDRINILQAALGAMRESAVKL 345

Query: 112 QVIPRSA------------------------------LIDGRSIPEDLPCQAFAVIKGDS 141
               +                                L+DG  +P+DLP    AV+KGD+
Sbjct: 346 LQQKQQQGQQQQQQQDAGSAAADPPSAPPPSPALDFLLVDGNRLPKDLPVPGRAVVKGDA 405

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
               IAAAS IAKVTRDRLM    ++YP YGF  H GY    H + I++ GPS +HR +F
Sbjct: 406 TVSCIAAASCIAKVTRDRLMMKLDEQYPQYGFAQHKGYGVPAHMEAIRKYGPSAVHRRSF 465

Query: 202 RPLRNLS 208
            P+++++
Sbjct: 466 EPVKSMT 472


>gi|254776202|ref|ZP_05217718.1| ribonuclease HII [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 239

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/201 (38%), Positives = 113/201 (56%), Gaps = 10/201 (4%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE+ +    + PVAG+DEVGRGA AGP+VVAA +L P  +     ++DSKK++   RE L
Sbjct: 20  LESALYRSGLGPVAGVDEVGRGACAGPLVVAACVLGPAKLESLAALDDSKKLTESVRERL 79

Query: 72  YEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           +  I   A    ++ I  A    +D+  +H A ++ +  AV  L + P   L DG  +P 
Sbjct: 80  FPVIRRYALAYHVVFIPPAE---VDRRGVHVANIEGMRRAVAGLSLRPGYVLSDGFRVP- 135

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            L   +  VI GD+++  IAAAS++AKV+RDRLM     ++P YGF  H GY T  H   
Sbjct: 136 GLAVPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMDAEHPGYGFADHKGYSTPAHSAA 195

Query: 188 IKEKGPSCIHRLTFRPLRNLS 208
           +   GP   HR +F  +R ++
Sbjct: 196 LARLGPCPQHRHSFINVRRVA 216


>gi|299536766|ref|ZP_07050074.1| ribonuclease HII [Lysinibacillus fusiformis ZC1]
 gi|298727778|gb|EFI68345.1| ribonuclease HII [Lysinibacillus fusiformis ZC1]
          Length = 253

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/185 (42%), Positives = 115/185 (62%), Gaps = 6/185 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAI-IS 82
           +AG+DE GRG LAGPVV AA+IL P N     G+NDSK++S  KR      +   A+   
Sbjct: 70  IAGVDEAGRGPLAGPVVTAAVIL-PTNCEALVGLNDSKQLSKDKRNCFATLVKEHAVSYF 128

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I   S Q ID+ NI++AT  ++  +VE+L   P   L+D  ++P  +P  +  +IKGD+ 
Sbjct: 129 IHFQSAQQIDELNIYEATKQSMKVSVESLSTKPDVVLVDAMTLPITIPQDS--IIKGDAK 186

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           SL+IAAASI+AK  RD  M    +++P YGF  H GY T +H + ++E GP+  HR +F 
Sbjct: 187 SLAIAAASILAKTARDEYMEQLDEEFPMYGFGQHAGYGTKQHLKALEEFGPTIHHRKSFE 246

Query: 203 PLRNL 207
           P++++
Sbjct: 247 PIKSM 251


>gi|331698498|ref|YP_004334737.1| Ribonuclease H [Pseudonocardia dioxanivorans CB1190]
 gi|326953187|gb|AEA26884.1| Ribonuclease H [Pseudonocardia dioxanivorans CB1190]
          Length = 265

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/194 (38%), Positives = 110/194 (56%), Gaps = 4/194 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKR 68
           ++ L++ +    + PVAG+DE GRGA AGP+VVAA +L P +     G+ DSK ++   R
Sbjct: 35  NWTLQSTLHRHGLGPVAGVDEAGRGACAGPLVVAACVLRPGDAQRLAGLTDSKLLTAAAR 94

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           EE +E +T  A+ +S+     + ID+  +H A ++ +  AV  L   P   L DG  +  
Sbjct: 95  EEYFELLTRRAVDLSVVVIPPREIDRRGVHAANIEGMRRAVAGLAQRPGYVLTDGFPV-R 153

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
                A AV KGD ++  +AAAS++AKVTRDR+M    ++ P YGF  H GY T  H   
Sbjct: 154 GFGAPALAVPKGDLVAACVAAASVLAKVTRDRIMVELDERLPQYGFAVHKGYCTPVHDAA 213

Query: 188 IKEKGPSCIHRLTF 201
           +   GPS  HR +F
Sbjct: 214 LAAHGPSAEHRYSF 227


>gi|327313027|ref|YP_004328464.1| ribonuclease HII [Prevotella denticola F0289]
 gi|326944091|gb|AEA19976.1| ribonuclease HII [Prevotella denticola F0289]
          Length = 200

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/179 (39%), Positives = 104/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL P      ++DSKK++ +KR  L + I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPPGYQNSLLDDSKKLTARKRYALRDTIEHDAVAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + ID+ NI  A+  A++ A++ L+V P + ++DG             +IKGD   LS
Sbjct: 73  VTPEEIDRINILNASFLAMHRALDQLKVRPEAVIVDGNRFTPYRKLPFATIIKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M    ++YP Y +  ++GYPT KH+Q I+E G +  HR ++  L
Sbjct: 133 IAAASILAKTYRDDYMCSLAEEYPQYDWQKNMGYPTKKHRQAIREYGITPYHRRSYNLL 191


>gi|262202029|ref|YP_003273237.1| ribonuclease H [Gordonia bronchialis DSM 43247]
 gi|262085376|gb|ACY21344.1| Ribonuclease H [Gordonia bronchialis DSM 43247]
          Length = 228

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/195 (41%), Positives = 110/195 (56%), Gaps = 10/195 (5%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
            E  +    + PVAG+DE GRGA AGP+VVAA +L P  +     ++DSK+++ + RE L
Sbjct: 19  FEFALHRNGLGPVAGVDEAGRGACAGPLVVAACVLKPTQLTSLADLDDSKRLTERTRETL 78

Query: 72  YEKIT----SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           Y  +T    S + + I +A    ID+  IH A ++ +  AV  L V P   L DG  +P 
Sbjct: 79  YRAVTRYAHSWSAVIIDAAE---IDRIGIHVANIEGMRRAVAALDVTPGYVLSDGFKVP- 134

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            L   +  VI GD  +  IAAASIIAKVTRDR+M     ++P Y F  H GY TA H   
Sbjct: 135 GLTAPSLPVIGGDGAAACIAAASIIAKVTRDRIMVAMDDEHPGYDFAVHKGYSTAHHMSR 194

Query: 188 IKEKGPSCIHRLTFR 202
           I   GPS  HR+++R
Sbjct: 195 IDTAGPSPQHRMSYR 209


>gi|94969905|ref|YP_591953.1| RNase HII [Candidatus Koribacter versatilis Ellin345]
 gi|189043528|sp|Q1IMM1|RNH2_ACIBL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|94551955|gb|ABF41879.1| RNase HII [Candidatus Koribacter versatilis Ellin345]
          Length = 254

 Score =  121 bits (304), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/180 (46%), Positives = 111/180 (61%), Gaps = 3/180 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AGIDEVGRGAL GPVV AA+ILDPN    G+ DSK +  + RE L ++I    I  SI+
Sbjct: 48  IAGIDEVGRGALFGPVVAAAVILDPNYRIKGLRDSKLLPAETREILSKRIREHCIAWSIA 107

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           +     ID+ NI+ A+  A+ HAV  L   P   LID   +  DL C    +I GD++S 
Sbjct: 108 AVDVARIDQLNIYWASNLAMKHAVRGLSCQPDHLLIDAMKL--DLDCAQTPIIHGDALSA 165

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASIIAKV RD L+R     +P+Y   S+ GY   KH + ++E GPS +HR +F P+
Sbjct: 166 SIAAASIIAKVHRDALIREWAPIFPEYDLASNKGYSAPKHIKALREFGPSPLHRQSFAPV 225


>gi|54026116|ref|YP_120358.1| ribonuclease HII [Nocardia farcinica IFM 10152]
 gi|81373729|sp|Q5YS47|RNH2_NOCFA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|54017624|dbj|BAD58994.1| putative RNase HII [Nocardia farcinica IFM 10152]
          Length = 251

 Score =  121 bits (304), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/196 (41%), Positives = 112/196 (57%), Gaps = 4/196 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREEL 71
           LEA +    + PVAG+DE GRG  AGP+VVAA +L P   +   G++DSKK++   REEL
Sbjct: 22  LEAALIRGGLGPVAGVDEAGRGPCAGPLVVAACLLAPKAYDRLAGLDDSKKLTEAAREEL 81

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y  IT  A+   +       ID   IH A ++ +  AV  L+  P   L DG  +P  L 
Sbjct: 82  YPVITRLALAWEVVVIPAWEIDAIGIHVANIEGMRRAVAGLRQRPGYVLTDGFRVP-GLA 140

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD+ +  IAAASI+AKVTRDR+M     ++P YGF +H GY T +H   ++ 
Sbjct: 141 APSLPVIGGDAAAACIAAASILAKVTRDRIMVELDSRHPGYGFAAHKGYNTPEHTAALQR 200

Query: 191 KGPSCIHRLTFRPLRN 206
            GP   HR ++R +R 
Sbjct: 201 LGPCSEHRRSWRNVRE 216


>gi|324998958|ref|ZP_08120070.1| ribonuclease HII [Pseudonocardia sp. P1]
          Length = 234

 Score =  121 bits (304), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/184 (38%), Positives = 104/184 (56%), Gaps = 5/184 (2%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREELYEKITSSA 79
            + PVAG+DE GRGA AGP+VVAA +L P +     G+ DSK ++   RE  Y +I   A
Sbjct: 3   GLGPVAGVDEAGRGASAGPLVVAACVLRPADAAALDGLTDSKLLTASAREHWYGRIRKRA 62

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-ALIDGRSIPEDLPCQAFAVI 137
           + +++       +D+  +H A ++ +  AV  L  +P    L DG ++       A AV 
Sbjct: 63  LDLAVVVIPPAEVDRRGVHIANIEGMRRAVAALTTVPPGYVLTDGFAV-RGFGRPALAVP 121

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGD ++  IAAAS++AKVTRDR+M     ++  YGF  H GY T +H+  ++  GP   H
Sbjct: 122 KGDRVAACIAAASVLAKVTRDRIMTELDAEHAAYGFAVHKGYNTPEHEGALRAHGPCPEH 181

Query: 198 RLTF 201
           R +F
Sbjct: 182 RFSF 185


>gi|297562257|ref|YP_003681231.1| ribonuclease H [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296846705|gb|ADH68725.1| Ribonuclease H [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 232

 Score =  121 bits (304), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/197 (35%), Positives = 112/197 (56%), Gaps = 1/197 (0%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +ELE  +R      VAG+DEVGRGA AGP++V A +      P G+ DSK+++ K+R E+
Sbjct: 16  YELEDELRSSGARVVAGVDEVGRGAWAGPLLVCAAVPGEGAPPPGLTDSKRLTPKRRREI 75

Query: 72  YEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            +++    A  +   +S + ID+  + +A   A   A++ L   P + ++DGR      P
Sbjct: 76  ADQLRPWVADHAFGWSSPEEIDEVGMTEALHRASRRALDALSPRPDAVILDGRHDFIGRP 135

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            +    +KGD   +S+AAA+I+AKV RD LM      +P YGF+   GYP+  H+  + E
Sbjct: 136 WRVRTCVKGDLACVSVAAAAILAKVRRDALMAELAADHPGYGFERAAGYPSPVHRAALAE 195

Query: 191 KGPSCIHRLTFRPLRNL 207
            GP+  HR+++  L +L
Sbjct: 196 SGPTPHHRMSWSYLDDL 212


>gi|16329251|ref|NP_439979.1| ribonuclease HII [Synechocystis sp. PCC 6803]
 gi|7227925|sp|P72657|RNH2_SYNY3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|1651731|dbj|BAA16659.1| ribonuclease HII [Synechocystis sp. PCC 6803]
          Length = 190

 Score =  121 bits (304), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/181 (40%), Positives = 107/181 (59%), Gaps = 5/181 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-I 80
           +AG+DEVGRGAL GPVV AA+++    I      G+ DSK++S + R +L + +      
Sbjct: 1   MAGVDEVGRGALFGPVVAAAVLVPIEAINQLQALGVKDSKQLSPQHRSQLAQALPDYVHS 60

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             IS A    I++ NI +A+L A+  AV+ L V+P   L+DGR     +     AV  GD
Sbjct: 61  YGISFADVPTINRVNIRQASLLAMERAVQKLPVMPAWVLVDGRDTLPHIAMAQMAVTGGD 120

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
             SL I+AASI+AKV RD L+    +++P Y   S+ GY TAKH+Q +++ G + +HR  
Sbjct: 121 RKSLLISAASILAKVWRDTLITRLAERFPGYDLASNKGYGTAKHRQGLRQYGATPLHRPL 180

Query: 201 F 201
           F
Sbjct: 181 F 181


>gi|158522314|ref|YP_001530184.1| ribonuclease H [Desulfococcus oleovorans Hxd3]
 gi|158511140|gb|ABW68107.1| Ribonuclease H [Desulfococcus oleovorans Hxd3]
          Length = 195

 Score =  121 bits (304), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/189 (46%), Positives = 113/189 (59%), Gaps = 4/189 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E   R      +AG+DE GRG LAGPVV AA++   +     I DSKK+S KKR  LY+ 
Sbjct: 5   EDSARSDGFSIIAGLDEAGRGPLAGPVVAAAVVFPDDYTNDRITDSKKLSAKKRASLYDD 64

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPEDLPCQ 132
           I   A+ + I       ID+ NI +A+L A+  AVENL   P   LIDG  +IP   P  
Sbjct: 65  IYRDALTVGIGIVDAVEIDRINILQASLLAMAMAVENLFPQPDFLLIDGTFTIPR--PVG 122

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              ++KGDS S+SIAAASI+AKV+RD +M   H  YP++GF  H GYPT  H+  I + G
Sbjct: 123 QRPIVKGDSASISIAAASIVAKVSRDNMMERYHLDYPEFGFSQHKGYPTKAHRNAIFQYG 182

Query: 193 PSCIHRLTF 201
           P+ IHR +F
Sbjct: 183 PTLIHRASF 191


>gi|284992383|ref|YP_003410937.1| Ribonuclease H [Geodermatophilus obscurus DSM 43160]
 gi|284065628|gb|ADB76566.1| Ribonuclease H [Geodermatophilus obscurus DSM 43160]
          Length = 257

 Score =  121 bits (304), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 110/204 (53%), Gaps = 8/204 (3%)

Query: 4   NSIPERPH--FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN---IPFGIN 58
            S+ +RP   +++E  +  +    VAG DE GRGA AGP+V AA +L       +P G+ 
Sbjct: 19  TSVDDRPDALWDMERSLHRRGFPAVAGADEAGRGACAGPLVAAACVLPAGRRGRVP-GLA 77

Query: 59  DSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117
           DSK ++   RE +YE++   A+  S+       +D   +H   ++A+  AV  L      
Sbjct: 78  DSKLLTVAARERVYEEVVDRAVAWSVVLLPVADLDARGMHVTNIEALRRAVWALDPGADY 137

Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
            L DG  +P  L     AV KGD I+  +AAAS++AKVTRDR+M   H+++P+Y F  H 
Sbjct: 138 VLTDGFPVP-GLARPTLAVWKGDRIAACVAAASVLAKVTRDRIMLDLHERWPEYDFAVHK 196

Query: 178 GYPTAKHQQVIKEKGPSCIHRLTF 201
           GY TA H   ++  GP   HR  F
Sbjct: 197 GYSTAAHDAALQRYGPCPEHRKRF 220


>gi|258542064|ref|YP_003187497.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-01]
 gi|256633142|dbj|BAH99117.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-01]
 gi|256636199|dbj|BAI02168.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-03]
 gi|256639254|dbj|BAI05216.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-07]
 gi|256642308|dbj|BAI08263.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-22]
 gi|256645363|dbj|BAI11311.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-26]
 gi|256648418|dbj|BAI14359.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-32]
 gi|256651471|dbj|BAI17405.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654462|dbj|BAI20389.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-12]
          Length = 215

 Score =  121 bits (304), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/186 (44%), Positives = 112/186 (60%), Gaps = 6/186 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISHKKREELYEKI--TSSAI 80
           VAG+DEVGRG LAGPVV AA++     P ++   I+DSKK+    RE + E++       
Sbjct: 19  VAGVDEVGRGPLAGPVVAAAVVFGAGVPADLAAVIDDSKKLKPAVREAIAERLPQVPGIE 78

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
           I I +AS   IDK NIH A   A+  AV  L  +P   L+DG  +P D  C A A++ GD
Sbjct: 79  IGIGAASTAEIDKLNIHHAAHLAMQRAVGRLPRLPDHVLVDGNKLP-DFGCDAQAIVGGD 137

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
            +SLSIAAASI+AKV RDR M     ++PDYG++ + GY TA H++ +   G +  HR T
Sbjct: 138 RVSLSIAAASIVAKVVRDRAMARLDARWPDYGWEKNAGYGTAVHRKALISVGITPHHRKT 197

Query: 201 FRPLRN 206
           F  +R 
Sbjct: 198 FGTVRR 203


>gi|325269676|ref|ZP_08136289.1| ribonuclease HII [Prevotella multiformis DSM 16608]
 gi|324988044|gb|EGC20014.1| ribonuclease HII [Prevotella multiformis DSM 16608]
          Length = 200

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 70/179 (39%), Positives = 103/179 (57%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL P      ++DSKK++  KR  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPPGYRNCELDDSKKLTPGKRYALRETIEHDALAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + ID+ NI  A+  A++ A++ L+V P + ++DG             ++KGD   LS
Sbjct: 73  VTPEEIDRINILNASFLAMHRALDQLKVRPEAVIVDGNRFTPYRKLPFATIVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M    ++YP Y +  ++GYPT KH+Q I+E G +  HR ++  L
Sbjct: 133 IAAASILAKTYRDDYMCSLAEEYPQYDWQKNMGYPTKKHRQAIREYGITPYHRKSYNLL 191


>gi|312879567|ref|ZP_07739367.1| RNase HII [Aminomonas paucivorans DSM 12260]
 gi|310782858|gb|EFQ23256.1| RNase HII [Aminomonas paucivorans DSM 12260]
          Length = 189

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 104/182 (57%), Gaps = 5/182 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81
           VAG DE GRG LAGPVV AA +L P+     +  G+ DSK ++ ++RE L+  +    ++
Sbjct: 3   VAGTDEAGRGPLAGPVVAAAAVLTPDQRRRLMQRGLGDSKALTPRRRESLFALMEELGVL 62

Query: 82  -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
               +AS   ID  NI  A+L A+  A   L   P   ++DG +    L      +  GD
Sbjct: 63  WRAQAASAARIDGTNILAASLWAMGRATVALDPPPDLVVVDGNARIPGLSLPQRCLPGGD 122

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           ++  ++ AAS++AKV RDR M    + YP YGF  H GYPTA+H++ ++  GPS +HR T
Sbjct: 123 ALVPAVMAASVVAKVLRDRAMESLDRLYPGYGFAKHKGYPTAEHRRALERLGPSPVHRAT 182

Query: 201 FR 202
           FR
Sbjct: 183 FR 184


>gi|325106085|ref|YP_004275739.1| RNase HII [Pedobacter saltans DSM 12145]
 gi|324974933|gb|ADY53917.1| RNase HII [Pedobacter saltans DSM 12145]
          Length = 198

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/177 (40%), Positives = 100/177 (56%), Gaps = 1/177 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL  +     + DSK+++ K R+ L  +I   A+  +++ 
Sbjct: 13  AGCDEAGRGCLAGPVFAAAVILPKDFFHPLLTDSKQLTDKDRKALRIEIEEKALAFAVAP 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
             H+ ID+ NI  A+  A++ A++ L + P   +IDG             VIKGD    S
Sbjct: 73  VDHEEIDRINILNASFLAMHKALDKLTIRPEFIIIDGNRFKSYNNIGHQCVIKGDGKYYS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           IAAASI+AK  RD  M   H+++P Y ++ + GYPT KH+  I E G    HR TFR
Sbjct: 133 IAAASILAKTYRDDYMDALHEEFPLYDWNKNKGYPTTKHRLAILEHGICTYHRKTFR 189


>gi|315637651|ref|ZP_07892857.1| ribonuclease HII [Arcobacter butzleri JV22]
 gi|315478105|gb|EFU68832.1| ribonuclease HII [Arcobacter butzleri JV22]
          Length = 192

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 75/181 (41%), Positives = 103/181 (56%), Gaps = 6/181 (3%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82
           M  + GIDE GRG LAGP+VVA +IL  + +  G+NDSK +S KKRE+L+++I   +   
Sbjct: 1   MKNLCGIDEAGRGPLAGPLVVAGVILLEDIV--GLNDSKVLSEKKREKLFDEIKEKSKHH 58

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV-IKGDS 141
           I  +  + ID+  I      +I   +ENL+    S L+DG +   +   Q     IK D+
Sbjct: 59  IVFSDAKLIDEKGISFCLKSSILEIIENLKEFSNSFLMDGNT---NFGIQILQKEIKADA 115

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
               ++AASI+AKV+RDR M      YP Y F  H GY T  H + IKE G S IHR TF
Sbjct: 116 KYAQVSAASILAKVSRDRFMDEISPLYPKYDFHKHKGYGTKAHIEAIKEFGRSDIHRHTF 175

Query: 202 R 202
           +
Sbjct: 176 K 176


>gi|227549010|ref|ZP_03979059.1| ribonuclease HII [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078920|gb|EEI16883.1| ribonuclease HII [Corynebacterium lipophiloflavum DSM 44291]
          Length = 213

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/198 (37%), Positives = 104/198 (52%), Gaps = 10/198 (5%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREELY 72
           E  + +  + PVAG+DE GRGA  GPV VAA +L P  +    G+ DSK++    R  LY
Sbjct: 11  EVALDKAGLGPVAGVDEAGRGACFGPVTVAACVLPPRPLAQLDGLTDSKQLRPVARASLY 70

Query: 73  EKIT----SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           + I     S A++ I +A    ID+  I  A +D    AV  L   P   L+D   +P  
Sbjct: 71  DAICDVALSFAVVHIPAAE---IDRRGIQVANVDGARRAVAKLGARPGYVLVDALRVP-G 126

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L      +I GDS +  IAAAS++AKV+RDRL+    ++Y DYG   H GY T  H   +
Sbjct: 127 LTAPQLPIIGGDSTARCIAAASVLAKVSRDRLVTEMAQRYADYGIAGHKGYGTQAHMAAV 186

Query: 189 KEKGPSCIHRLTFRPLRN 206
           +  G S  HR ++  +R 
Sbjct: 187 RRYGASDEHRYSYANVRQ 204


>gi|45657433|ref|YP_001519.1| ribonuclease HII [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|45600672|gb|AAS70156.1| ribonuclease HII [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 231

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/211 (41%), Positives = 110/211 (52%), Gaps = 23/211 (10%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--------IPFGINDSKKI 63
           FELE         P  GIDE GRG  AGP+ VA +    N+        I  G+ DSKK+
Sbjct: 10  FELEEHRFYSESIP-CGIDEAGRGPYAGPLSVALVSFSQNSLTQILEGKILKGLTDSKKL 68

Query: 64  SHKKREELYEKITSSAIISISSA-SHQYIDKHNIHKATLDAIYHAVENLQ-----VIPRS 117
           S KKRE LY +I  +A  S  +  S  YID+  I++A L+ I    + +        P  
Sbjct: 69  SEKKRESLYPEIIKAAQFSYQTFISPNYIDRKGINRAVLEGILKCTKLINRFTQSKFPLK 128

Query: 118 ALIDGR----SIPEDL---PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170
            LIDG       PE +    C  F  IKGD   +SIAAASI+AKV+RDR M    KKYP 
Sbjct: 129 LLIDGNYNFNRYPEWMNLKGCSTF-YIKGDLRIVSIAAASILAKVSRDRYMISVSKKYPI 187

Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           Y FD H GY T  H+++I   G S IHR +F
Sbjct: 188 YRFDQHKGYGTKLHEELILLHGLSDIHRRSF 218


>gi|209966435|ref|YP_002299350.1| ribonucleasehII [Rhodospirillum centenum SW]
 gi|209959901|gb|ACJ00538.1| ribonucleasehII [Rhodospirillum centenum SW]
          Length = 218

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/184 (44%), Positives = 115/184 (62%), Gaps = 6/184 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP---FGINDSKKISHKKREELYEKITSSAIIS 82
           V G+DE GRG LAGPVV AA++L    +P    GI+DSK++S  +RE L   I + A + 
Sbjct: 22  VCGVDEAGRGPLAGPVVAAAVVLPGGPLPDWCAGIDDSKRLSAARREALCGLIRAQARVG 81

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQV-IPRSALIDGRSIPEDLPCQAF-AVIKGD 140
           +  A    ID  NI +AT  A+  AVE L   +P  AL+DG   P  LPC    A++ GD
Sbjct: 82  VGIADVAEIDTLNILRATFLAMRRAVEGLGAPLPAVALVDGNQRPP-LPCAIVEAIVDGD 140

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           ++ LSIAAASI+AKVTRDR+M    +++P YG++ + GY TA H++ ++  G +  HR +
Sbjct: 141 ALCLSIAAASIVAKVTRDRIMAELAERHPGYGWERNAGYGTAAHREALRRLGATPEHRRS 200

Query: 201 FRPL 204
           F P+
Sbjct: 201 FAPV 204


>gi|297587481|ref|ZP_06946125.1| ribonuclease H [Finegoldia magna ATCC 53516]
 gi|297574170|gb|EFH92890.1| ribonuclease H [Finegoldia magna ATCC 53516]
          Length = 207

 Score =  121 bits (303), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 78/190 (41%), Positives = 107/190 (56%), Gaps = 12/190 (6%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
           + G+DEVGRG LAGPVV  AII+  N  I  G+ DSKK+S KKR +  + I   A+  S+
Sbjct: 14  ICGVDEVGRGPLAGPVVTCAIIMPKNCEIIDGVTDSKKLSEKKRIKFKDMILDQALAYSV 73

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALIDGRSIPEDLPCQAFAVI 137
           +      ID+ NI +A   ++  AVE+L+      + P   +ID   I  D+   +F  +
Sbjct: 74  NFVDQSVIDEINIKQANRLSMKRAVESLKTKDNKFIKPDLIVIDAEKIDTDIKQMSF--V 131

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGD     I+ ASI+AKV RD  M+     YP YGF+ H GY T  H+++I E G   +H
Sbjct: 132 KGDEKLYPISCASIVAKVIRDEYMKDMAVIYPQYGFEKHKGYGTKLHREMILEHGECPLH 191

Query: 198 RLTFRPLRNL 207
           R TF  LR L
Sbjct: 192 RKTF--LRKL 199


>gi|228471979|ref|ZP_04056747.1| ribonuclease HII [Capnocytophaga gingivalis ATCC 33624]
 gi|228276591|gb|EEK15304.1| ribonuclease HII [Capnocytophaga gingivalis ATCC 33624]
          Length = 197

 Score =  121 bits (303), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 107/181 (59%), Gaps = 9/181 (4%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL  +     +NDSK+++ K+R  L   I   A+  ++  
Sbjct: 11  AGTDEAGRGCLAGPVTAAAVILPEDFYHPLLNDSKQMTEKQRNLLRPIIEEQALSYAVVH 70

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLP--CQAFAVIKGDS 141
            S + ID+ NI  A+++A++ A++ L + P   ++DG      +++P  CQ    +KGD 
Sbjct: 71  LSPERIDQINILNASIEAMHQALDKLTLTPEFVVVDGNRFKPYKEIPYSCQ----VKGDG 126

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             + IAAAS++AK  RD  M   HK+YP Y +D + GYPT +H++ I E G    HR TF
Sbjct: 127 RFMRIAAASVLAKTYRDAYMETLHKQYPMYHWDKNKGYPTREHREAILEYGACEHHRKTF 186

Query: 202 R 202
           +
Sbjct: 187 Q 187


>gi|313901979|ref|ZP_07835395.1| Ribonuclease H [Thermaerobacter subterraneus DSM 13965]
 gi|313467768|gb|EFR63266.1| Ribonuclease H [Thermaerobacter subterraneus DSM 13965]
          Length = 271

 Score =  121 bits (303), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/177 (43%), Positives = 107/177 (60%), Gaps = 2/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG LAGPVV  A+IL       G++DSK++    RE+L  +I   A+  ++ 
Sbjct: 90  VAGVDEVGRGCLAGPVVAGAVILPAGAHLLGLDDSKRLPPAAREQLAARIRQQAVAWAVG 149

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A+ Q ID  NI  AT  A+  A++ L V+P+  L+DGR  P DL     A++ GD+   
Sbjct: 150 LATPQEIDALNIWHATRLAMRRALDALAVMPQRVLVDGRP-PGDLGYPLDALVDGDARYA 208

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +IAAAS++AKV RD  M    ++YP YGF  H GY TA H++ +   GP   HR +F
Sbjct: 209 AIAAASVVAKVYRDAWMSRLDREYPAYGFAQHKGYATAAHRRALARYGPCPEHRRSF 265


>gi|294828096|ref|NP_712567.2| ribonuclease H II [Leptospira interrogans serovar Lai str. 56601]
 gi|293385944|gb|AAN49585.2| ribonuclease H II [Leptospira interrogans serovar Lai str. 56601]
          Length = 231

 Score =  121 bits (303), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 88/211 (41%), Positives = 110/211 (52%), Gaps = 23/211 (10%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--------IPFGINDSKKI 63
           FELE         P  GIDE GRG  AGP+ VA +    N+        I  G+ DSKK+
Sbjct: 10  FELEEHRFYSESIP-CGIDEAGRGPYAGPLSVALVSFSQNSLTQILEGKILKGLTDSKKL 68

Query: 64  SHKKREELYEKITSSAIISISSA-SHQYIDKHNIHKATLDAIYHAVENLQ-----VIPRS 117
           S KKRE LY +I  +A  S  +  S  YID+  I++A L+ I    + +        P  
Sbjct: 69  SEKKRESLYPEIIKAAQFSYQTFISPNYIDRKGINRAVLEGILKCTKLINRFTQSKFPLK 128

Query: 118 ALIDGR----SIPEDL---PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170
            LIDG       PE +    C  F  IKGD   +SIAAASI+AKV+RDR M    KKYP 
Sbjct: 129 LLIDGNYNFNRYPEWMNLKDCSTF-YIKGDLRIVSIAAASILAKVSRDRYMISVSKKYPI 187

Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           Y FD H GY T  H+++I   G S IHR +F
Sbjct: 188 YRFDQHKGYGTKLHEELILLHGLSDIHRRSF 218


>gi|282856252|ref|ZP_06265535.1| ribonuclease HII [Pyramidobacter piscolens W5455]
 gi|282586011|gb|EFB91296.1| ribonuclease HII [Pyramidobacter piscolens W5455]
          Length = 186

 Score =  121 bits (303), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 73/181 (40%), Positives = 107/181 (59%), Gaps = 5/181 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS-SAI 80
           + G+DE GRG LAGPVV AA++L        +  G+ DSKK++  +RE+++ ++   + +
Sbjct: 3   LVGVDEAGRGPLAGPVVAAAVVLTEAQREDLVGLGLRDSKKMTPPRREKVFARMLELNVV 62

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
              +SA  + ID+ NI +ATL A+  AVE L +     ++DG      L     A+I GD
Sbjct: 63  WRAASAPAERIDRLNILRATLWAMRRAVEKLPLDVDGVIVDGNQEIPGLSVYQQAIIGGD 122

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
            I   I+AAS++AKV RDR+M +    YPDY F  H GY T  H++ I E GP+ IHR +
Sbjct: 123 DIYPQISAASVVAKVLRDRVMTVYDGIYPDYDFARHKGYGTEAHRRAIAELGPTPIHRRS 182

Query: 201 F 201
           F
Sbjct: 183 F 183


>gi|304383864|ref|ZP_07366321.1| ribonuclease HII [Prevotella marshii DSM 16973]
 gi|304334942|gb|EFM01215.1| ribonuclease HII [Prevotella marshii DSM 16973]
          Length = 198

 Score =  121 bits (303), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/179 (44%), Positives = 115/179 (64%), Gaps = 5/179 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG+LAG V  AA+IL P+     INDSKK++ ++R  L E I + AI  +I  
Sbjct: 13  AGCDEAGRGSLAGSVYAAAVILPPDYRNDAINDSKKLTPRQRYALREVIQTDAIAWAIGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143
           A+ + ID+ NI  A++ A++ A++ L + P + +IDG       +LPCQ   ++KGD+  
Sbjct: 73  ATAEEIDRINILNASILAMHRALDGLHLRPEAVIIDGNRFQPYRNLPCQT--IVKGDAKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           LSIAAA+I+AK  RD  M    ++YP Y + S+ GYPT +H+Q IK+ G S +HR +FR
Sbjct: 131 LSIAAAAILAKTYRDDYMDALAEEYPVYEWHSNKGYPTKRHRQAIKDYGASPLHRQSFR 189


>gi|255530318|ref|YP_003090690.1| ribonuclease HII [Pedobacter heparinus DSM 2366]
 gi|255343302|gb|ACU02628.1| Ribonuclease H [Pedobacter heparinus DSM 2366]
          Length = 203

 Score =  121 bits (303), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 74/178 (41%), Positives = 103/178 (57%), Gaps = 5/178 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL P+ I   +NDSK+++H++R+ L   I   AI  +++ 
Sbjct: 13  AGCDEAGRGCLAGPVFAAAVILPPDFIAGELNDSKQLNHQQRKRLRIIIEKEAIAWAVAE 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143
             +  ID+ NI  A+  A++ A+E L V P+   IDG    +  D+P     ++KGD   
Sbjct: 73  VDNIEIDQINILNASFLAMHRAIEKLLVKPQYLSIDGNRFKKYPDIPHAC--IVKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           L+IAAASI+AK  RD  M     +YP Y +  + GYPT  H+    E G S  HR TF
Sbjct: 131 LNIAAASILAKTHRDEFMERISDEYPHYQWHQNKGYPTVVHRSAALEHGLSPYHRKTF 188


>gi|189502530|ref|YP_001958247.1| hypothetical protein Aasi_1185 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497971|gb|ACE06518.1| hypothetical protein Aasi_1185 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 194

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 80/181 (44%), Positives = 111/181 (61%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DEVGRG LAGPVV AA+IL  N     +NDSKK+S  KR  L   I   AI  +I  
Sbjct: 13  AGCDEVGRGCLAGPVVAAAVILPKNYYHPLLNDSKKLSTAKRILLDSIIKEVAIAWAIGE 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143
           A+H+ ID+ NI  A+  A++ A+  L  +P+  LIDG+      ++P Q   +I GD+  
Sbjct: 73  ATHEEIDQINIFNASCLAMHRAISQLGQLPQLLLIDGKYFNPYPNIPHQC--IIDGDAQF 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AK  RD  M     +YPDYG++ +VGYPT  H++ I+E G +  HR +++ 
Sbjct: 131 NAIAAASILAKTYRDAYMHQLSIQYPDYGWEKNVGYPTVTHRKAIQELGLTPYHRKSYKL 190

Query: 204 L 204
           L
Sbjct: 191 L 191


>gi|325281756|ref|YP_004254298.1| Ribonuclease H [Odoribacter splanchnicus DSM 20712]
 gi|324313565|gb|ADY34118.1| Ribonuclease H [Odoribacter splanchnicus DSM 20712]
          Length = 199

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 69/179 (38%), Positives = 104/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL  N     +NDSK++S K+R  L   I   A+  +++S
Sbjct: 13  AGCDEAGRGCLAGPVFAAAVILPDNFSDELLNDSKQLSEKQRAGLRPVIEREALAWAVAS 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
             +  IDK NI  A++ A++ A++ L+V P   ++DG    +        ++KGD   +S
Sbjct: 73  VDNHEIDKINILNASILAMHRALDQLKVRPGHIIVDGNRFKKYRDIPHLCIVKGDGKYMS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAAS++AK  RD  M   H  +P Y +  + GYPT +H++ I++ G +  HR +F  L
Sbjct: 133 IAAASVLAKTHRDEYMENLHALFPVYNWKKNKGYPTQEHRKGIEQAGVTEFHRTSFTLL 191


>gi|116328318|ref|YP_798038.1| ribonuclease H [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116331044|ref|YP_800762.1| ribonuclease H [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116121062|gb|ABJ79105.1| Ribonuclease H [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116124733|gb|ABJ76004.1| Ribonuclease H [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 223

 Score =  120 bits (302), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 85/211 (40%), Positives = 106/211 (50%), Gaps = 21/211 (9%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--------GINDSKK 62
           HFE E         P  GIDE GRG  AGP+ VA +    N +          G+ DSKK
Sbjct: 8   HFEPEEYRFYSESIP-CGIDEAGRGPYAGPLSVALVSFSQNTLHQILEGKLLKGLTDSKK 66

Query: 63  ISHKKREELYEKITSSAIISISS-ASHQYIDKHNIHKATLDAIYHAVENL-----QVIPR 116
           +S KKRE LY +I   A IS  +  S  YID+  I++A L+ I    +         +P 
Sbjct: 67  LSEKKREALYPEILKIAQISCQTFLSPNYIDREGINRAVLEGIRKCAKMAIRGVSSTLPL 126

Query: 117 SALIDGRSIPEDLPCQAFA------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170
             LIDG       P   +         KGD   +SIAAASI+AKV+RDR M    KKYPD
Sbjct: 127 QLLIDGNYNFNRYPEWNYFKNRSSFYTKGDLRIVSIAAASILAKVSRDRYMTSISKKYPD 186

Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           Y FD H GY T  H+++I   G S IHR +F
Sbjct: 187 YRFDRHKGYGTKLHEELILRYGLSDIHRRSF 217


>gi|319779558|ref|YP_004130471.1| Ribonuclease HII [Taylorella equigenitalis MCE9]
 gi|317109582|gb|ADU92328.1| Ribonuclease HII [Taylorella equigenitalis MCE9]
          Length = 212

 Score =  120 bits (302), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 80/203 (39%), Positives = 115/203 (56%), Gaps = 23/203 (11%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS--I 83
           V G+DE GRG LAG V   A++L    I  G+ DSKK+S KKREEL E +   A +S  +
Sbjct: 6   VIGVDEAGRGPLAGDVFAGAVLLGSPEI-VGLTDSKKLSPKKREEL-EVLIKGASVSYFV 63

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRS-------ALIDGRSIPEDLP----- 130
           + ++ + ID  NI  ATL A+  A++  L  +P          +IDG  IP  L      
Sbjct: 64  ACSTVEEIDSLNILNATLLAMNRAIDGVLGALPPKYQSSQIKVIIDGNQIPNPLKREGIF 123

Query: 131 -CQAFAV-----IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
             Q F +     IKGD ++ +++AASI+AK  RDR +   H+  P Y F+ H GY TA H
Sbjct: 124 DYQGFKIEVKSQIKGDLLTPTVSAASILAKTARDRHILQLHESVPQYKFNEHKGYGTALH 183

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
            ++I++ GPS  HR +F P+++L
Sbjct: 184 LEMIRKYGPSIFHRKSFNPVKSL 206


>gi|292670872|ref|ZP_06604298.1| ribonuclease HII [Selenomonas noxia ATCC 43541]
 gi|292647493|gb|EFF65465.1| ribonuclease HII [Selenomonas noxia ATCC 43541]
          Length = 251

 Score =  120 bits (302), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/203 (44%), Positives = 119/203 (58%), Gaps = 4/203 (1%)

Query: 8   ERPH--FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           ER H  +  E    E     VAG+DE GRG LAGPV VAA++L        +NDSKK+SH
Sbjct: 46  ERLHAMYTYERAAIEAGHLIVAGVDEAGRGPLAGPVAVAAVVLPMECHLSHLNDSKKLSH 105

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
             REEL+ +IT  A    IS    + ID+ NI +AT   +Y A+  L   P   LID   
Sbjct: 106 AVREELFAQITEQAFSYHISLIDAETIDRMNILQATRMGMYEAIAALTPAPDEVLIDAVE 165

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +P+ L   + ++IKGD+ S SIAAASI+AKVTRD LM     +YP YGF  H GY T +H
Sbjct: 166 LPK-LSMSSKSIIKGDAKSASIAAASILAKVTRDHLMEQYDTEYPHYGFAKHKGYGTQEH 224

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
              I++ G   IHR +F P+R++
Sbjct: 225 IDAIRKYGVCPIHRKSFEPIRSM 247


>gi|150025268|ref|YP_001296094.1| ribonuclease HII [Flavobacterium psychrophilum JIP02/86]
 gi|189043597|sp|A6GYW0|RNH2_FLAPJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|149771809|emb|CAL43283.1| Ribonuclease HII [Flavobacterium psychrophilum JIP02/86]
          Length = 219

 Score =  120 bits (302), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 78/206 (37%), Positives = 109/206 (52%), Gaps = 25/206 (12%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL  N     +NDSK++S K RE+L   I + AI  S++ 
Sbjct: 13  AGTDEAGRGCLAGPVTAAAVILPENFESKILNDSKQLSEKTREQLKPIIEALAISFSVTH 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR---------------------- 123
                ID+ NI  A+L A+   V  L   P   + DG                       
Sbjct: 73  LDPLIIDEINILNASLKAMQECVLQLNPTPLYIIADGNRPLLSKNSFKKCSGKIFTNREI 132

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            I + +P  +  +IKGDS  LSIAAAS++AK  RD  M   H+++P Y +  + GYPT +
Sbjct: 133 EILQSIPSSS--IIKGDSKYLSIAAASVLAKTYRDEYMNTIHEEFPMYNWKKNKGYPTKE 190

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLSV 209
           H++ I++ G +  HR+TFR L   +V
Sbjct: 191 HREAIRKYGVTKYHRMTFRLLPEQTV 216


>gi|261417089|ref|YP_003250772.1| Ribonuclease H [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261373545|gb|ACX76290.1| Ribonuclease H [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326679|gb|ADL25880.1| ribonuclease HII [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 247

 Score =  120 bits (302), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 82/220 (37%), Positives = 112/220 (50%), Gaps = 40/220 (18%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS-A 79
           +N   V GIDEVGRG LAGPVV  A +L   +    +NDSKK+S  KRE +++ +  + A
Sbjct: 28  ENSAIVVGIDEVGRGPLAGPVVACAAVLKSPDALLTLNDSKKLSRPKREAMFDAVKDACA 87

Query: 80  IISISSASHQYIDKHNIHKATLDAIYHAVENLQV-------------------------I 114
             +I+SAS + ID+ NI +A   A+  A++ L                           +
Sbjct: 88  CYAIASASVEEIDEINILEADFLAMRRALQALGFPGLNESAPEIPIEVKGSLNDVMPDSV 147

Query: 115 PRSAL-------IDG----RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163
           P SAL       +DG    R +P +       ++KGD    SI+AASI+AKV RDR M  
Sbjct: 148 PASALSSNVLIAVDGNLKIRGVPAE---NQMPIVKGDGRIASISAASILAKVFRDRYMDK 204

Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             + YP YGFD H GY T  H   I+ +G S  HR +F P
Sbjct: 205 LEELYPGYGFDKHAGYGTKAHLDAIRRQGFSPAHRKSFHP 244


>gi|38234094|ref|NP_939861.1| ribonuclease HII [Corynebacterium diphtheriae NCTC 13129]
 gi|73917606|sp|Q6NGJ8|RNH2_CORDI RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|38200356|emb|CAE50042.1| ribonuclease HII [Corynebacterium diphtheriae]
          Length = 229

 Score =  120 bits (302), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 73/194 (37%), Positives = 103/194 (53%), Gaps = 10/194 (5%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREEL 71
            E  + +  + PVAG+DE GRG+  GP+ +AA I+    I     + DSKK+S  KR EL
Sbjct: 24  FEVTLDKHGLGPVAGVDEAGRGSCCGPITIAACIMPQRPIAQLQALTDSKKLSAAKRAEL 83

Query: 72  YEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           Y  I   A    II IS+A    ID+  I  A +  +  A+E L V P   L D   +P 
Sbjct: 84  YPLIKKYALAWSIIHISAAE---IDREGIQHANIFGMRRAIEKLDVAPGYVLTDAMKVP- 139

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            L C +  +I GD+    IAAAS++AK +RD +M     KYP+YG + H GY T  H   
Sbjct: 140 GLRCPSLPIIGGDAAVRCIAAASVLAKHSRDLIMDDLGGKYPEYGLEDHKGYGTKSHMDA 199

Query: 188 IKEKGPSCIHRLTF 201
           ++  G +  HR ++
Sbjct: 200 VRHHGATPEHRYSY 213


>gi|85373281|ref|YP_457343.1| ribonuclease HII [Erythrobacter litoralis HTCC2594]
 gi|122545127|sp|Q2NCP5|RNH2_ERYLH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|84786364|gb|ABC62546.1| ribonuclease HII [Erythrobacter litoralis HTCC2594]
          Length = 212

 Score =  120 bits (302), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 79/187 (42%), Positives = 112/187 (59%), Gaps = 9/187 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           V G+DE GRG LAGPVV AA++L  +  P G++DSKK++ K+R  L E I  +    +  
Sbjct: 20  VFGVDEAGRGPLAGPVVAAAVVLG-DAYPKGLDDSKKLTAKRRAVLDEDIRKTCGWGVGV 78

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVI----PRSALIDGRSIPE---DL-PCQAFAVI 137
              + ID  NI  AT+ A+  AV+ L       P   LIDG   P    DL   +A A+I
Sbjct: 79  VDVEEIDTLNILGATMRAMSLAVQGLAAKLGGDPDMVLIDGNLTPHGRCDLWQWEAQAII 138

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
            GD I  +I+AASI+AK  RDR+M  A + YP+YG+ S+ GY TA+H + ++  GP+ +H
Sbjct: 139 GGDGIEPAISAASIVAKEWRDRIMTEAAQDYPEYGWLSNKGYGTAQHLEALRLHGPTPLH 198

Query: 198 RLTFRPL 204
           R +F P+
Sbjct: 199 RRSFAPV 205


>gi|325474109|gb|EGC77297.1| ribonuclease HII [Treponema denticola F0402]
          Length = 198

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 107/193 (55%), Gaps = 18/193 (9%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-NDSKKISHKKREELYEKITS--SAIIS 82
           + GIDE GRG LAGPV  AA+IL P+   F I  DSKK++ KKREE+ + I +  + + S
Sbjct: 2   LCGIDEAGRGPLAGPVTAAAVIL-PSRFDFSILKDSKKLTEKKREEVRKTIYADPNVLWS 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENL-------------QVIPRSALIDGRSIPEDL 129
           I  AS+  ID+ NI +AT  A+  A E L             + I    ++DG  IP   
Sbjct: 61  IGWASNYEIDEINILQATFLAMERAYEGLYLKLQEFCKLNNDKFIEPDIIVDGNFIPNIK 120

Query: 130 PCQAF-AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
            C +  A++K D     + AASI+AK  RDR+M      YP+YG++ H GY T KH + I
Sbjct: 121 NCSSIKALVKADDSVYEVMAASILAKTARDRMMIRYSWLYPEYGYEKHKGYGTKKHIEAI 180

Query: 189 KEKGPSCIHRLTF 201
           +  G S I R +F
Sbjct: 181 RFNGYSPIQRRSF 193


>gi|289523589|ref|ZP_06440443.1| ribonuclease HII [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503281|gb|EFD24445.1| ribonuclease HII [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 193

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/182 (41%), Positives = 104/182 (57%), Gaps = 5/182 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII 81
           V G+DE GRG LAGPVV AA+      +      G+ DSK +S K+REE++  +     I
Sbjct: 3   VVGVDEAGRGPLAGPVVAAAVAATREKMSLLKSVGVTDSKALSSKRREEIFLLLRRYGFI 62

Query: 82  SISSASH-QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             + A++  +ID+ NI +ATL A+  AV +L + P   ++DG      LP    A+ K D
Sbjct: 63  YRAQAANPWFIDRANILQATLWAMEKAVSSLSLSPDIVIVDGNQKIPGLPFPQKALPKAD 122

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
              L + AASI+AKV RDR+M    K YP YGF  H GYPT +H+  +   G S IHR T
Sbjct: 123 KNVLVVGAASIVAKVIRDRVMCAYDKLYPGYGFAVHKGYPTKEHRIALALMGASPIHRKT 182

Query: 201 FR 202
           F+
Sbjct: 183 FK 184


>gi|288573052|ref|ZP_06391409.1| Ribonuclease H [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568793|gb|EFC90350.1| Ribonuclease H [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 194

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/181 (40%), Positives = 103/181 (56%), Gaps = 6/181 (3%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII- 81
           AG+DE GRG +AGPVV AA IL        +  G+ DSKK++  +RE+++  +    +I 
Sbjct: 8   AGVDEAGRGPMAGPVVAAAAILTEEQSERLVSAGLRDSKKMTPLRREKVFSLMGELGVIW 67

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENL-QVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
           +  +AS + IDK NI +ATL A+  +VE L   +    L+DG     DL         GD
Sbjct: 68  AAQAASVERIDKINILRATLWAMRRSVERLPSRLFDGVLVDGDKEIPDLIWPQRVCPHGD 127

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
            +   I+AAS++AKV RDR M    + YP YGF SH GY T  H+  ++  GPS IHR +
Sbjct: 128 DVYPQISAASVVAKVLRDRAMVALDRLYPAYGFASHKGYGTKAHRNALEAMGPSPIHRKS 187

Query: 201 F 201
           F
Sbjct: 188 F 188


>gi|323702665|ref|ZP_08114326.1| Ribonuclease H [Desulfotomaculum nigrificans DSM 574]
 gi|323532328|gb|EGB22206.1| Ribonuclease H [Desulfotomaculum nigrificans DSM 574]
          Length = 214

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/197 (41%), Positives = 114/197 (57%), Gaps = 9/197 (4%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            ELE  + ++ +  VA  DEVGRG L G VV AA++L    +  G++DSKK++ KKRE L
Sbjct: 4   LELEQKLWQQGIKLVAFCDEVGRGPLLGSVVAAAVVLPVGLLIEGVDDSKKLTPKKRETL 63

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL------QVIPRSALIDGRS 124
              I   A+ + I    +  ID+ NI +A+  A+  AV NL      +V P   LID  S
Sbjct: 64  CRYIYDQALAVGIGEVDNNLIDQINIRQASRLAMKQAVMNLRSKEGHKVTPDYLLIDAES 123

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           I  D+P Q+  +I GD++S  IAAASI+AKV RD +     + YPDYG  SH GY T  H
Sbjct: 124 IDLDIPQQS--IIHGDAVSHGIAAASIVAKVFRDSMCMEWDQMYPDYGIASHKGYATKAH 181

Query: 185 QQVIKEKGPSCIHRLTF 201
            + + + G + +HR TF
Sbjct: 182 IEALLKLGATPLHRRTF 198


>gi|307565732|ref|ZP_07628201.1| ribonuclease HII [Prevotella amnii CRIS 21A-A]
 gi|307345558|gb|EFN90926.1| ribonuclease HII [Prevotella amnii CRIS 21A-A]
          Length = 200

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/179 (40%), Positives = 103/179 (57%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL        +NDSKK+S K R  L + I  +A+  +I  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPKTYCNEHLNDSKKLSSKTRYALRKDIELNAVAWAIGK 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + ID+ NI  A++ A++ A++ L + P + +IDG             +IKGD   LS
Sbjct: 73  VTPEEIDRINILNASILAMHRALDQLIIRPEAIIIDGNRFKPYHNIPYTTIIKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M    KKYP Y ++ ++GYPT  H+Q I + G +  HR +F+ L
Sbjct: 133 IAAASILAKTYRDDYMCTLAKKYPQYEWEHNMGYPTKAHRQAIAKYGITPYHRKSFKLL 191


>gi|86134237|ref|ZP_01052819.1| Ribonuclease HII [Polaribacter sp. MED152]
 gi|85821100|gb|EAQ42247.1| Ribonuclease HII [Polaribacter sp. MED152]
          Length = 199

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 105/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85
           AG DE GRG L+GPVV AA+IL  N     +NDSK++S K R+ L   I  +AI  ++S 
Sbjct: 13  AGTDEAGRGCLSGPVVAAAVILPKNFSHPLLNDSKQLSEKNRQILKPIIEENAIAHAVSF 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
              + +DK N+ +A++  ++ A+E L V P   ++DG             ++KGD+  LS
Sbjct: 73  VYQEEVDKINVLQASITGMHRAIEALDVTPEFIIVDGNKFRNYKEIPHETIVKGDAKFLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAAS++AK  RD  M   H+++  Y +  + GYPT +H+  I++ G +  HR +F+ L
Sbjct: 133 IAAASVLAKTYRDDYMEKIHQEFSMYNWQKNKGYPTKEHRDAIRKFGATIHHRKSFKLL 191


>gi|310779317|ref|YP_003967650.1| Ribonuclease H [Ilyobacter polytropus DSM 2926]
 gi|309748640|gb|ADO83302.1| Ribonuclease H [Ilyobacter polytropus DSM 2926]
          Length = 203

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/180 (43%), Positives = 108/180 (60%), Gaps = 4/180 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84
           + GIDE GRG LAGPVV AA+ +      F  INDSKK+S KKRE L++ I  +  + + 
Sbjct: 14  IIGIDEAGRGPLAGPVVAAAVKIKKYVKEFDMINDSKKLSEKKRELLFDVIIENCHVGVG 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
             + + ID +NI  AT   +  A+E++    +   + L+DG     +   +   +IKGD 
Sbjct: 74  VVNEKDIDNYNILNATFMGMIKAIEDISEEGISFENVLVDGNHKIREYNNRQTPIIKGDG 133

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            SL+IAAASIIAKVTRDR+M    +KYP+YGF  H GY T +H++ I + G    HR TF
Sbjct: 134 KSLAIAAASIIAKVTRDRIMVKYDEKYPEYGFAKHKGYGTKQHREAILKNGACQCHRKTF 193


>gi|167750814|ref|ZP_02422941.1| hypothetical protein EUBSIR_01796 [Eubacterium siraeum DSM 15702]
 gi|167656249|gb|EDS00379.1| hypothetical protein EUBSIR_01796 [Eubacterium siraeum DSM 15702]
          Length = 219

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/178 (49%), Positives = 114/178 (64%), Gaps = 4/178 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDE GRG LAG V  AA+IL  + I  GINDSKK++ KKRE L++ I   A+   I+
Sbjct: 32  ICGIDEAGRGPLAGDVYAAAVILPDDIIIDGINDSKKLTEKKREALFDIIREKAVSYCIA 91

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143
           +AS + ID  NI  A + A+  A + L V P +ALIDG   P  D+P    AV+KGD+ S
Sbjct: 92  TASVEEIDSMNILNAAMLAMKRAYDGLDVKPDTALIDGNKTPGLDIP--ETAVVKGDATS 149

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            SIAAASI+AKV RDR M+   +KYP Y F+ H GY T  H +++ + G S IHR TF
Sbjct: 150 ASIAAASILAKVARDRYMKELAEKYPQYMFEKHKGYGTKLHYEMLDKYGASDIHRKTF 207


>gi|42527055|ref|NP_972153.1| ribonuclease HII [Treponema denticola ATCC 35405]
 gi|81412195|sp|Q73MG1|RNH2_TREDE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|41817479|gb|AAS12064.1| ribonuclease HII [Treponema denticola ATCC 35405]
          Length = 198

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 18/193 (9%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-NDSKKISHKKREELYEKITS--SAIIS 82
           + GIDE GRG LAGPV  AA+IL P++  F I  DSKK++ KKREE+ + I +  + I +
Sbjct: 2   LCGIDEAGRGPLAGPVTAAAVIL-PSSFDFSILKDSKKLTEKKREEVRKTIYADPNVIWA 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENL-------------QVIPRSALIDGRSIPEDL 129
           I  AS+  ID+ NI +AT  A+  A E L             + I    ++DG  IP   
Sbjct: 61  IGWASNYEIDEINILQATFLAMERAYEGLYLKLQEFCKLNNDKFIEPDIIVDGNFIPNIK 120

Query: 130 PCQAF-AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
            C +  A++K D     + AASI+AK  RDR+M      YP+YG++ H GY T KH + I
Sbjct: 121 NCSSIKALVKADDSVYEVMAASILAKTARDRMMIRYSWIYPEYGYEKHKGYGTKKHIEAI 180

Query: 189 KEKGPSCIHRLTF 201
           +  G S I R +F
Sbjct: 181 RFNGYSPIQRRSF 193


>gi|283481616|emb|CAZ69732.1| putative ribonuclease [Emiliania huxleyi virus 99B1]
          Length = 209

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/192 (41%), Positives = 109/192 (56%), Gaps = 14/192 (7%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREELYEKIT-SSAIIS 82
           V G+DE GRG LAGPVV  A  + P N P    I DSKK++ K+R E +E +T +S I  
Sbjct: 22  VVGVDEAGRGCLAGPVVAGACFV-PENEPIHPLIKDSKKMTEKQRMEAFEYLTLNSNIKC 80

Query: 83  ISSASHQY-IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL----PCQAFAVI 137
            +S    Y ID  NI KAT+ A+ + +   +     AL+DG   P+        Q F  I
Sbjct: 81  YASFIEPYEIDDINILKATMKAMGNVIN--ESGANLALVDGDKTPKMFVDTSEIQTF--I 136

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCI 196
           KGDS   SI+ AS+IAKV+RD  M    K YP+YGF +H+GY T  H   I++ GP   +
Sbjct: 137 KGDSRMYSISCASVIAKVSRDLYMEELSKTYPEYGFSNHMGYGTQAHMAAIEKNGPIPFV 196

Query: 197 HRLTFRPLRNLS 208
           HR ++ P++  +
Sbjct: 197 HRYSYAPIKKFT 208


>gi|218437055|ref|YP_002375384.1| ribonuclease H [Cyanothece sp. PCC 7424]
 gi|218169783|gb|ACK68516.1| Ribonuclease H [Cyanothece sp. PCC 7424]
          Length = 212

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/183 (44%), Positives = 116/183 (63%), Gaps = 5/183 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           +AG+DEVGRGAL GPVV  A+++  + I      G+ DSK++S K+R EL ++I   AI 
Sbjct: 24  IAGVDEVGRGALFGPVVAGAVVVPVSAIDQLTQLGVKDSKQLSPKRRVELAQQIKGLAID 83

Query: 82  S-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
           S +S A+   ID+ NI +A+L A+Y AV  L++ P   L+DGR    +L  +   +IKGD
Sbjct: 84  SHVSFATVGEIDQINILQASLKAMYRAVVKLKINPAVCLVDGRHPLPNLEIRQENIIKGD 143

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
             S  IAAASI+AKV RD L+    +KYP Y   ++ GY T +H++ + + G S  HRL+
Sbjct: 144 ERSPVIAAASILAKVWRDNLIVRLAQKYPQYDLIANKGYGTLRHREALLKYGASPQHRLS 203

Query: 201 FRP 203
           FRP
Sbjct: 204 FRP 206


>gi|325856482|ref|ZP_08172171.1| ribonuclease HII [Prevotella denticola CRIS 18C-A]
 gi|325483451|gb|EGC86424.1| ribonuclease HII [Prevotella denticola CRIS 18C-A]
          Length = 200

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/179 (38%), Positives = 103/179 (57%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG L G V  AA+IL P      ++DSKK++ +KR  L + I   A+  ++  
Sbjct: 13  AGCDEAGRGCLVGSVYAAAVILPPGYQNSLLDDSKKLTARKRYALRDTIEHDAVAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + ID+ NI  A+  A++ A++ L+V P + ++DG             +IKGD   LS
Sbjct: 73  VTPEEIDRINILNASFLAMHRALDQLKVRPEAVIVDGNRFTPYRKLPFATIIKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M    ++YP Y +  ++GYPT KH+Q I+E G +  HR ++  L
Sbjct: 133 IAAASILAKTYRDDYMCSLAEEYPQYDWQKNMGYPTKKHRQAIREYGITPYHRRSYNLL 191


>gi|291514820|emb|CBK64030.1| RNase HII [Alistipes shahii WAL 8301]
          Length = 199

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 99/178 (55%), Gaps = 1/178 (0%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
           P AG DE GRG LAGPV  AA++L P+     +NDSK+++ + RE+L   I   A+  ++
Sbjct: 11  PEAGCDEAGRGCLAGPVFAAAVMLPPDFHDPLLNDSKQMTERNREKLRAVIEREAVAWAV 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
            + S   ID+ NI  A+ + +  AV  L   P    IDG      L      ++KGD   
Sbjct: 71  EAVSAARIDEINILNASFEGMSLAVARLDPAPAFLAIDGNRFRTRLEIPWRCIVKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             IAAAS++AK  RD  M    +++P YG+  + GYPT +H+  I+E G +  HRLTF
Sbjct: 131 ADIAAASVLAKTHRDEYMLCIAEEFPQYGWAKNKGYPTREHRLAIREHGLTPHHRLTF 188


>gi|83594539|ref|YP_428291.1| ribonuclease HII [Rhodospirillum rubrum ATCC 11170]
 gi|97189243|sp|Q2RPE1|RNH2_RHORT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|83577453|gb|ABC24004.1| Ribonuclease H [Rhodospirillum rubrum ATCC 11170]
          Length = 218

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/187 (41%), Positives = 109/187 (58%), Gaps = 7/187 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS--SA 79
           VAG+DEVGRG LAGPVV AA+++D       +   ++DSKK+S   R+ L   + +    
Sbjct: 14  VAGVDEVGRGPLAGPVVAAAVVIDAGRADPALLARLDDSKKLSAALRQRLATALLADPGV 73

Query: 80  IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
            + +  AS   ID+ NI +AT  A+  A+  L      AL+DG  +P  LPC   AV++G
Sbjct: 74  EVGLGEASVAEIDRINILQATFLAMGRALAKLAPPVDLALVDGNRLPP-LPCPGQAVVRG 132

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D +SLSIAAASI+AKV RD  M    +  P YG++ + GY TA+H   +   G +  HR 
Sbjct: 133 DGLSLSIAAASIVAKVHRDAAMATLAQALPGYGWERNAGYGTAEHLAALDRLGATPHHRA 192

Query: 200 TFRPLRN 206
           +F P+R 
Sbjct: 193 SFAPVRE 199


>gi|289449974|ref|YP_003475451.1| ribonuclease HII [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184521|gb|ADC90946.1| ribonuclease HII [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 228

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/191 (41%), Positives = 112/191 (58%), Gaps = 2/191 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            + E    ++    +AG DE GRG +AGP+  AA+++DP    +G+NDSKK+S K+REEL
Sbjct: 35  LKFEEQAAQQGFTCIAGTDEAGRGPVAGPIFAAAVVIDPRRPLYGVNDSKKLSPKRREEL 94

Query: 72  YEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   +A  SI+  + + ID+  I  A    +  AV  + +     L+D   + +D  
Sbjct: 95  FNIICERAAAYSIAMVTAKVIDQIGIGPANDLVLKQAVGRMSIKADYVLVDYFKL-KDYA 153

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               A+ KGDS+S SIAAASI+AKV+RDR M    K YP YGF +H GY TA H+Q IKE
Sbjct: 154 IPYLAITKGDSLSASIAAASILAKVSRDRYMVQQDKIYPQYGFAAHKGYGTAAHRQAIKE 213

Query: 191 KGPSCIHRLTF 201
            G    HR +F
Sbjct: 214 YGLCPEHRRSF 224


>gi|313773607|gb|EFS39573.1| ribonuclease HII [Propionibacterium acnes HL074PA1]
          Length = 204

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/195 (37%), Positives = 103/195 (52%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72
           E  +    + PVAG DE GRGA AGP+V AA+ILD        G+ DSK +S  KRE L+
Sbjct: 4   ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 63

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   A+ +S         D+  + +A +  +  AV  L V P   L DG  + + L  
Sbjct: 64  NVIMDKALAVSWVGVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 122

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               + KGDS+   +AA+ + A+V RDR+M     + P Y F  H GY TA HQ+ +KE 
Sbjct: 123 PDLGMWKGDSVCACVAASPLAAQVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 182

Query: 192 GPSCIHRLTFRPLRN 206
           GPS  HR+++  +R 
Sbjct: 183 GPSRQHRMSYANVRR 197


>gi|150010125|ref|YP_001304868.1| ribonuclease HII [Parabacteroides distasonis ATCC 8503]
 gi|255012614|ref|ZP_05284740.1| ribonuclease HII [Bacteroides sp. 2_1_7]
 gi|256838948|ref|ZP_05544458.1| ribonuclease HII [Parabacteroides sp. D13]
 gi|298374495|ref|ZP_06984453.1| ribonuclease HII [Bacteroides sp. 3_1_19]
 gi|301308175|ref|ZP_07214129.1| ribonuclease HII [Bacteroides sp. 20_3]
 gi|166226634|sp|A6LHT2|RNH2_PARD8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|149938549|gb|ABR45246.1| ribonuclease HII [Parabacteroides distasonis ATCC 8503]
 gi|256739867|gb|EEU53191.1| ribonuclease HII [Parabacteroides sp. D13]
 gi|298268863|gb|EFI10518.1| ribonuclease HII [Bacteroides sp. 3_1_19]
 gi|300833645|gb|EFK64261.1| ribonuclease HII [Bacteroides sp. 20_3]
          Length = 199

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/181 (44%), Positives = 105/181 (58%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK++S KKR +L   I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGAVFAAAVILPEDFKNEDLNDSKQLSEKKRYKLRPVIEREAIAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIP-EDLPCQAFAVIKGDSIS 143
            S + IDK NI KA+  A++ A+E L+V P   LIDG R  P  D+P     V+KGD   
Sbjct: 73  VSPEEIDKINILKASFLAMHRAIEQLKVRPEHLLIDGNRFTPYPDIPHTT--VVKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAASI+AK  RD  M     +YP Y +  + GYPT  H++ I+  G +  HR TF  
Sbjct: 131 LSIAAASILAKTYRDDYMNELALEYPAYHWLDNKGYPTKVHREAIRTHGITPYHRKTFTL 190

Query: 204 L 204
           L
Sbjct: 191 L 191


>gi|255603855|ref|XP_002538125.1| ribonuclease hii, putative [Ricinus communis]
 gi|223513694|gb|EEF24259.1| ribonuclease hii, putative [Ricinus communis]
          Length = 168

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/168 (44%), Positives = 100/168 (59%), Gaps = 8/168 (4%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII- 81
           M  + GIDE GRG LAG V  AA+IL+P     G+ DSKK+S  KR+ L  +I + A+  
Sbjct: 1   MQRLCGIDEAGRGPLAGAVYAAAVILNPERPIAGLADSKKLSEAKRDALAIEIKAHALAW 60

Query: 82  SISSASHQYIDKHNIHKATLDAIYHA----VENLQVIPRSALIDGRSIPE-DLPCQAFAV 136
            I+S S Q ID+ NI +A+L A+  A    VE   +      +DG   P+ +LPC+A  +
Sbjct: 61  GIASVSAQEIDEINILQASLLAMQRAYQAMVEQFGLHATLIQVDGNRCPKFELPCEA--I 118

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +KGDS    I+AASI+AK  RD  + +   +YP YGF  H GYPTA H
Sbjct: 119 VKGDSKVAEISAASILAKTARDASLLVLDAEYPQYGFAQHKGYPTALH 166


>gi|157164148|ref|YP_001467724.1| ribonuclease HII [Campylobacter concisus 13826]
 gi|189043572|sp|A7ZG16|RNH2_CAMC1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|112800307|gb|EAT97651.1| ribonuclease HII [Campylobacter concisus 13826]
          Length = 184

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/182 (41%), Positives = 104/182 (57%), Gaps = 13/182 (7%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82
           M  + GIDE GRGALAGP+ VAA +L  N+   G+NDSKK++ K+REEL++KIT S+   
Sbjct: 1   MAKICGIDEAGRGALAGPLSVAACVL--NSEISGLNDSKKLTAKRREELFKKITKSSNFL 58

Query: 83  ISSASHQYIDKHNIHKATLDAI--YHA-VENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
           I+  S+  ID+  + +    A+  + A  E+ ++I    L  G  I          +IK 
Sbjct: 59  IAYFSNAQIDELGLSECLRRALKLFKAHFESFEIIYDGNLDYGVGIT--------TMIKA 110

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D     ++AASI+AKV+RDRLM    K YP YGF  H GY T  H   I + G S  HR 
Sbjct: 111 DGKVAGVSAASILAKVSRDRLMNGWDKFYPAYGFAGHKGYGTKSHLDAIAKFGYSDFHRK 170

Query: 200 TF 201
           +F
Sbjct: 171 SF 172


>gi|291299696|ref|YP_003510974.1| ribonuclease H [Stackebrandtia nassauensis DSM 44728]
 gi|290568916|gb|ADD41881.1| Ribonuclease H [Stackebrandtia nassauensis DSM 44728]
          Length = 211

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/194 (38%), Positives = 110/194 (56%), Gaps = 6/194 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP---FGINDSKKISHKKR 68
           + LE  +R +    VAG DE GRGA AGP+VVAA IL P+       G+ DSK ++ + R
Sbjct: 2   YVLENALRRRGFTLVAGADEAGRGACAGPLVVAAAIL-PDGARGQIAGLTDSKLLTERAR 60

Query: 69  EELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E++Y ++   A+  +I   S   +D+  +  + L  +  A+  L  +P  AL DG  +P 
Sbjct: 61  EDIYAQVVDRAVAHAIVVISPAEVDRLGVGASNLSGMRRALARLDPMPAYALTDGFPVP- 119

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            LP     V KGD ++  +AAAS++AKVTRDR+M    + +P YGF  H GY TA H   
Sbjct: 120 GLPVPGLGVWKGDRVAACVAAASVLAKVTRDRIMTELEQNHPGYGFAEHKGYGTAAHTHA 179

Query: 188 IKEKGPSCIHRLTF 201
           ++  GP   HRL++
Sbjct: 180 LRTLGPCPQHRLSY 193


>gi|283768287|ref|ZP_06341199.1| ribonuclease HII [Bulleidia extructa W1219]
 gi|283104679|gb|EFC06051.1| ribonuclease HII [Bulleidia extructa W1219]
          Length = 200

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/193 (38%), Positives = 113/193 (58%), Gaps = 9/193 (4%)

Query: 20  EKNMW----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           EK  W     + GIDE GRG LAG + VA +I         I DSK IS KKRE L+++I
Sbjct: 9   EKKAWFSSKRLVGIDEAGRGPLAGSLFVAGVIFPIGYENEEIYDSKAISEKKREHLFKQI 68

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
              AI   I     + ID+ NI++AT +A+   +E  Q  P   ++   ++P +L  +  
Sbjct: 69  QQDAIWFQIIEVPVEVIDEKNIYQATKEAM---LEIAQKAPCEVVLTD-AMPLNLDKEVH 124

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            ++KGD  S+SIAAASI+AKV+RD +M    +++P YG   + GYPT +H++ +K  G +
Sbjct: 125 DLVKGDQKSISIAAASILAKVSRDHVMVELDRQFPGYGLAKNKGYPTKEHREALKALGIT 184

Query: 195 CIHRLTFRPLRNL 207
            IHR ++ P++ +
Sbjct: 185 KIHRRSYGPVKKI 197


>gi|255025707|ref|ZP_05297693.1| ribonuclease HII [Listeria monocytogenes FSL J2-003]
 gi|255028970|ref|ZP_05300921.1| ribonuclease HII [Listeria monocytogenes LO28]
          Length = 233

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/157 (50%), Positives = 105/157 (66%), Gaps = 3/157 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG LAGPVV AA+IL  +    GINDSK++S  KR+ L+EKI   AI I + 
Sbjct: 73  IAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALFEKIKKEAIAIGVG 132

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
              H  ID+ NI++AT  A+  A+  L   P   LID  ++P        ++IKGD+ S+
Sbjct: 133 IIEHDVIDQVNIYEATKLAMCEALNQLTPEPDFVLID--AMPLRYTEAELSLIKGDTKSI 190

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           SIAAASIIAKVTRDRLM++  +KYP Y F +++GY T
Sbjct: 191 SIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGT 227


>gi|300771702|ref|ZP_07081577.1| ribonuclease H [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761691|gb|EFK58512.1| ribonuclease H [Sphingobacterium spiritivorum ATCC 33861]
          Length = 198

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/177 (41%), Positives = 98/177 (55%), Gaps = 1/177 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+I   +     +NDSKK+S KKR  L   I   A+  +++S
Sbjct: 13  AGCDEAGRGCLAGPVFAAAVIFPKDYHHDLLNDSKKLSEKKRMALRPIIEQEALAFAVAS 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + IDK NIH A+  A++ A++ LQV     ++DG             +IKGD   LS
Sbjct: 73  VSAEEIDKINIHNASYLAMHRALDQLQVKAEYIIVDGNRFIPYPEVSHTCIIKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           IAAASI+AK  RD  M      +P Y +  + GYPT KH+  +   G +  HR TFR
Sbjct: 133 IAAASILAKTYRDEYMESIACDFPAYDWLQNKGYPTVKHRNAVLAYGLTPHHRKTFR 189


>gi|269125835|ref|YP_003299205.1| Ribonuclease H [Thermomonospora curvata DSM 43183]
 gi|268310793|gb|ACY97167.1| Ribonuclease H [Thermomonospora curvata DSM 43183]
          Length = 250

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/211 (34%), Positives = 113/211 (53%), Gaps = 10/211 (4%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP---------FGI 57
           P R   E+E  +RE     +AG+DEVGRGA AGPVVV A I  P   P           +
Sbjct: 18  PRRAGDEIERRLREAGAVRIAGVDEVGRGAWAGPVVVCAAIAGPGAPPSLPGRGGGTVHL 77

Query: 58  NDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116
            DSK ++  +RE   E + +     ++ +A    ID+  + +A   A   A++ L   P 
Sbjct: 78  TDSKLLTRAQREAFAEILPAWLEAHALGAAEPAEIDRVGMTEALRRAAVRALQALPHRPD 137

Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
           + ++DG+      P +    +  D  S+S+AAAS++AKV RDRLM    +++P YGF   
Sbjct: 138 AVILDGKHDVPGAPWRVHCQVGADRRSVSVAAASVLAKVHRDRLMARLEEEFPGYGFADS 197

Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
            GYP+  H++ ++E GP+  HRL++  L +L
Sbjct: 198 AGYPSPAHRRALQEHGPTPHHRLSWSYLDDL 228


>gi|288928610|ref|ZP_06422456.1| ribonuclease HII [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329594|gb|EFC68179.1| ribonuclease HII [Prevotella sp. oral taxon 317 str. F0108]
          Length = 202

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/184 (38%), Positives = 110/184 (59%), Gaps = 5/184 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSKK++ K+R  L  +I + A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSVFAAAVILPVDYENALLNDSKKLTEKQRYALRTQIETDALAWAVGE 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143
            +   IDK NI  A++ A++ A++ L++ P++ ++DG        LP +   ++KGD+  
Sbjct: 73  VTADEIDKINILNASILAMHRALDGLKLRPQAVIVDGNRFKPYGTLPHET--IVKGDAKF 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAAS++AK  RD  M     ++P Y +D + GYPT  H+  I+E G S  HR TF+ 
Sbjct: 131 LSIAAASVLAKTYRDDYMNSLALQHPAYQWDVNKGYPTKAHRAAIEEHGISPFHRKTFKG 190

Query: 204 LRNL 207
           ++ +
Sbjct: 191 VKEM 194


>gi|256784763|ref|ZP_05523194.1| ribonuclease HII [Streptomyces lividans TK24]
 gi|289768650|ref|ZP_06528028.1| ribonuclease HII [Streptomyces lividans TK24]
 gi|289698849|gb|EFD66278.1| ribonuclease HII [Streptomyces lividans TK24]
          Length = 233

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/183 (38%), Positives = 105/183 (57%), Gaps = 1/183 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL-YEKITSSAIISIS 84
           +AG+DEVGRGA AGPV V A I      P G+ DSK ++ K+R EL  E  T     ++ 
Sbjct: 23  IAGVDEVGRGAWAGPVTVCAAITGLRRPPVGLTDSKLLTIKRRTELEVELRTWVTSYALG 82

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID   +  A   A   A+E L V P + ++DG+      P +   VIKGD   +
Sbjct: 83  HASPEEIDAMGMTAALRLAAVRALETLPVRPDAVILDGKHDYLGAPWRVRTVIKGDQSCI 142

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           ++AAAS++AKV RD++M      + D+GF  + GYP+  H+  ++E+GP+  HRL++  L
Sbjct: 143 AVAAASVLAKVQRDKMMAELGVDHADFGFADNAGYPSPVHKAALEERGPTPHHRLSWAYL 202

Query: 205 RNL 207
             L
Sbjct: 203 DAL 205


>gi|188994631|ref|YP_001928883.1| ribonuclease HII [Porphyromonas gingivalis ATCC 33277]
 gi|238691470|sp|B2RIU1|RNH2_PORG3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|188594311|dbj|BAG33286.1| putative ribonuclease HII [Porphyromonas gingivalis ATCC 33277]
          Length = 201

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/179 (43%), Positives = 102/179 (56%), Gaps = 5/179 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
            G DE GRG LAGPV  AA+IL  +     +NDSK++S K+R  L   I S AI   I  
Sbjct: 14  CGCDEAGRGCLAGPVYAAAVILPADFSHPLLNDSKQLSEKQRYTLRPVIESEAIGWGIGI 73

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143
            S Q ID+ NI +A+  A++ A+E L   P   LIDG      E +P     ++ GD+  
Sbjct: 74  VSPQEIDEINILRASFLAMHRAIEQLPFRPERLLIDGNRFDPFEQIPHHC--IVGGDARY 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            SIAAASI+AK  RD  M   +K +P YG++ + GYP+  H+  I+  G S  HRLTFR
Sbjct: 132 RSIAAASILAKTYRDDSMLRLNKDFPMYGWERNKGYPSPAHKSAIRRFGVSPHHRLTFR 190


>gi|305666398|ref|YP_003862685.1| ribonuclease HII [Maribacter sp. HTCC2170]
 gi|88708390|gb|EAR00627.1| ribonuclease HII [Maribacter sp. HTCC2170]
          Length = 198

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 106/180 (58%), Gaps = 5/180 (2%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSA 86
           G DE GRG LAGPV  AA+IL  +     +NDSK++S  KR  L   I  SA+   ++  
Sbjct: 13  GTDEAGRGCLAGPVTAAALILPKDFKNVMLNDSKQLSENKRTILKPIIEQSAVCFGVAHI 72

Query: 87  SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSISL 144
             + IDK NI  A++ A++ A++ L    +  ++DG       D+P +   +IKGDS  +
Sbjct: 73  FPEEIDKINILNASILAMHKAIDQLTDDLKFIIVDGNRFKPYHDIPFEC--IIKGDSKYM 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAAS++AK  RD  M   H+++P Y +  + GYPT +H++ I+E G +  HR +FR L
Sbjct: 131 SIAAASVLAKTYRDGYMEQLHEEFPMYNWKKNKGYPTKEHREAIREYGITKYHRKSFRQL 190


>gi|330752580|emb|CBL87526.1| ribonuclease HII [uncultured Flavobacteria bacterium]
          Length = 191

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 108/182 (59%), Gaps = 7/182 (3%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISIS 84
           AG+DE GRG LAGPV  A +IL P  I    INDSK ++ KKR  L   I   AI   ++
Sbjct: 12  AGVDEAGRGCLAGPVTAAVVIL-PKGITLPQINDSKILTEKKRYNLRSLIEKCAIDFQVA 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSI 142
                 IDK NI  +T+ A++ A++ L+  P+  ++DG      +D+P +   ++KGD  
Sbjct: 71  HVFQDEIDKINILNSTIKAMHLAIKKLKETPQYIIVDGNKFYPYKDVPYKC--IVKGDGK 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +IAAASI+AK  RD  MR    ++P+YG++ + GYPT  H++ I++ G +  HR +F+
Sbjct: 129 YQNIAAASILAKTYRDDYMRKIEYEFPEYGWNKNKGYPTVTHRKAIEKFGITEHHRNSFK 188

Query: 203 PL 204
            L
Sbjct: 189 LL 190


>gi|15806947|ref|NP_295672.1| ribonuclease HII [Deinococcus radiodurans R1]
 gi|6459735|gb|AAF11501.1|AE002033_9 ribonuclease HII [Deinococcus radiodurans R1]
          Length = 212

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/183 (38%), Positives = 107/183 (58%), Gaps = 3/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DE GRGA AGP+ VAA+IL   +  +   DSK++S   REE   ++   A+  ++ 
Sbjct: 24  VAGVDEAGRGAWAGPLTVAAVILPGTSQEYPFRDSKQLSPAAREEYAAEVRRVAVAWAVE 83

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ N+  AT  A   A+  L+  P++ + D   +  DLP  A    + D++S 
Sbjct: 84  HAWPEEIDRLNVLGATHAAALRAIARLEPPPQALVTDYLRLRADLPLSA--PPRADALSY 141

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           S+AAAS++AK  RDRLMR    ++P YGF +H GY    H+  ++E G +  HR ++ P+
Sbjct: 142 SVAAASLLAKTERDRLMRELDAEFPGYGFAAHKGYGAPAHRAALRELGVTEQHRRSYAPI 201

Query: 205 RNL 207
           R L
Sbjct: 202 RAL 204


>gi|37521076|ref|NP_924453.1| ribonuclease H [Gloeobacter violaceus PCC 7421]
 gi|35212072|dbj|BAC89448.1| ribonuclease H [Gloeobacter violaceus PCC 7421]
          Length = 198

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/182 (42%), Positives = 114/182 (62%), Gaps = 8/182 (4%)

Query: 29  IDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS-SAIISI 83
           +DEVGRGALAG VV AA++L P+ IP     GI DSK +   +RE L+E+I + ++ + I
Sbjct: 1   MDEVGRGALAGCVVAAAVVLPPD-IPLAALAGITDSKLLDRPRREALHERILALASAVGI 59

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
            SAS   ID+ NI +AT  A+  A+  +  +    L+DG  + E L     A++ GD  S
Sbjct: 60  GSASVGEIDRLNILRATALAMGRALHRVAPV-EHVLVDGLPVAE-LGITQTAIVGGDRTS 117

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAASI+AKVTRDR M    +++  +G+ ++ GY TA H++ +   G + +HR +F P
Sbjct: 118 LSIAAASIVAKVTRDRWMERLDRRFAGFGWATNAGYGTAFHREALARLGVTPLHRRSFAP 177

Query: 204 LR 205
           +R
Sbjct: 178 VR 179


>gi|298530722|ref|ZP_07018124.1| Ribonuclease H [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510096|gb|EFI34000.1| Ribonuclease H [Desulfonatronospira thiodismutans ASO3-1]
          Length = 214

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/180 (42%), Positives = 109/180 (60%), Gaps = 4/180 (2%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
           P AG+DE GRG LAGPVV A ++L  +     + DSKKI+ K RE L  +I S+ +  S+
Sbjct: 21  PPAGLDEAGRGCLAGPVVAAVVVLPLDAQIARLTDSKKITSKVRESLIPEIKSTCLAWSL 80

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLPCQAFAVIKGDSI 142
             A  + ID+ NI +AT+ A+  AV +L + P   L+DG + IP ++P +   ++ GD  
Sbjct: 81  GLAWPREIDRINILQATMTAMKRAVLHLGLTPGQLLVDGNQKIPLNIPQKC--IVGGDMT 138

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AK  RD LM    ++YP YGF  H GY T KH Q +K  G S +HR +F+
Sbjct: 139 EPCISAASILAKTFRDMLMTKLDRRYPGYGFGQHKGYGTRKHLQALKSLGASPMHRKSFK 198


>gi|257455290|ref|ZP_05620525.1| ribonuclease HII [Enhydrobacter aerosaccus SK60]
 gi|257447252|gb|EEV22260.1| ribonuclease HII [Enhydrobacter aerosaccus SK60]
          Length = 240

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 116/224 (51%), Gaps = 46/224 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD-----------------------PNNIPF-GINDSK 61
           + G+DEVGRG L G VVV A+I D                        +N P   + DSK
Sbjct: 6   IIGVDEVGRGPLLGDVVVCALIFDKAILSIKEDSLSTDLPTADSVSISHNHPLSALTDSK 65

Query: 62  KISHKKREELYEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENL--QVIP 115
           K+S KKRE L+  I  +A    ++ IS++    ID+ NI +ATL  +  AV  +  Q++ 
Sbjct: 66  KLSEKKREALFSLIEQTASAHQVVKISAS---LIDQLNILQATLLGMKQAVAGVMAQMLA 122

Query: 116 R------SALIDGRSIPE--DLP-----CQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162
           +      S ++DG  +P   DLP         A++KGD     I+ AS+IAKVTRDR M 
Sbjct: 123 QYPTATFSVMVDGNKLPVLFDLPNYQQITHEQAIVKGDGKHACISGASVIAKVTRDRDMV 182

Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
              K YPDYG + H GYPTA H Q I+  G   +HR +F P++ 
Sbjct: 183 ALSKLYPDYGIEQHKGYPTAAHIQAIEHYGILPMHRKSFAPIKQ 226


>gi|330752106|emb|CBL87067.1| ribonuclease HII [uncultured Flavobacteria bacterium]
          Length = 194

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 109/182 (59%), Gaps = 7/182 (3%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           AG DE GRG LAGPV  AA+IL  + N P  +NDSKK++ K+R  L   I   A+  +++
Sbjct: 12  AGTDEAGRGCLAGPVTAAAVILPADFNEPL-LNDSKKLTEKQRFYLRPIIEKHAVAFAVA 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSI 142
             + + +D+ NI  A + A++ A++ L+  P   L+DG      + +P Q   +I+GD  
Sbjct: 71  HCTPKKVDEINILNAAIKAMHKAIQKLKPTPIHILVDGNRFHPFKKIPHQC--IIRGDGK 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +IAAASI+AK  RD LM    KK+P Y + ++ GYPT KH++ I+  G +  HR TFR
Sbjct: 129 YQNIAAASILAKTYRDDLMLTLDKKHPKYDWKNNKGYPTKKHREAIRANGITSHHRKTFR 188

Query: 203 PL 204
            L
Sbjct: 189 LL 190


>gi|313159708|gb|EFR59065.1| ribonuclease HII [Alistipes sp. HGB5]
          Length = 203

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 99/178 (55%), Gaps = 1/178 (0%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
           P AG DE GRG LAGPV  AA++L P+     +NDSK+++ + RE+L   I   A+  ++
Sbjct: 15  PEAGCDEAGRGCLAGPVFAAAVMLPPDFHDPLLNDSKQMTERNREKLRTIIEHEAVAWAV 74

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
            + S + ID+ NI  A+ + +  A   L   P    IDG      L      ++KGD   
Sbjct: 75  EAVSAERIDEINILNASFEGMSLAAARLDPAPGFLAIDGNRFRTRLELPYRCIVKGDGKY 134

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             IAAAS++AK  RD  M    +++P YG+  + GYPT +H+  I+E G +  HRLTF
Sbjct: 135 ADIAAASVLAKTHRDEYMLRLAEEFPQYGWRKNKGYPTREHRLAIREYGLTPHHRLTF 192


>gi|229918612|ref|YP_002887258.1| ribonuclease H [Exiguobacterium sp. AT1b]
 gi|229470041|gb|ACQ71813.1| Ribonuclease H [Exiguobacterium sp. AT1b]
          Length = 250

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/183 (42%), Positives = 113/183 (61%), Gaps = 5/183 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           V G+DEVGRG LAGPVV AA++L D   +P G+NDSKK++   R+  Y  I   A + + 
Sbjct: 72  VVGVDEVGRGPLAGPVVAAAVLLPDGFYLP-GLNDSKKMTKSARDAAYAHIIEVAEVGVG 130

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
                 ID+ NI++AT  A+  A+  +  +  + LID   +  D+P Q+  +IKGD++S+
Sbjct: 131 IVEPAIIDEINIYEATKLAMTEAIHQVGEVD-ALLIDAMKLELDIPQQS--LIKGDTLSV 187

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAAS++AKV RDR+M      YP YGF  + GY T  H + ++  G + IHR TF P+
Sbjct: 188 SIAAASVVAKVVRDRMMEEYDLTYPGYGFAKNAGYGTETHLEGLRRLGVTPIHRRTFAPI 247

Query: 205 RNL 207
           + +
Sbjct: 248 KYM 250


>gi|226939651|ref|YP_002794724.1| ribonuclease HII [Laribacter hongkongensis HLHK9]
 gi|259494068|sp|C1D4C1|RNH2_LARHH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|226714577|gb|ACO73715.1| Rnh2 [Laribacter hongkongensis HLHK9]
          Length = 198

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/185 (42%), Positives = 109/185 (58%), Gaps = 6/185 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           V G+DE GRG LAG V  AA+ILDP     G+ DSKK+S  +RE L   I   A+   ++
Sbjct: 5   VCGVDEAGRGPLAGGVYAAAVILDPARPVEGLADSKKLSAARREALAPLIRERALAWCVA 64

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE---DLPCQAFAVIKGDS 141
            A+ + ID+ NI  AT+ A+  AV+ L V P +  +DG  +P    D+P  A A++KGD+
Sbjct: 65  WATVEEIDRLNILHATMLAMCRAVDGLAVPPDAIEVDGNRVPPFVLDIP--ARAIVKGDA 122

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
              +I+AASI+AK  RD        +YP YGF +H GYPTA H   I+  G   +HR +F
Sbjct: 123 TVAAISAASILAKTARDAECLELDARYPGYGFAAHKGYPTAAHVAAIERLGVLPVHRRSF 182

Query: 202 RPLRN 206
            P++ 
Sbjct: 183 GPVKR 187


>gi|260910879|ref|ZP_05917522.1| ribonuclease HII [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634987|gb|EEX53034.1| ribonuclease HII [Prevotella sp. oral taxon 472 str. F0295]
          Length = 202

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 107/184 (58%), Gaps = 1/184 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSKK++ K+R  L  +I + A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSVFAAAVILPTDYENALLNDSKKLTEKQRYALRTQIEADALAWAVGE 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            +   ID+ NI  A++ A++ A++ L++ P++ ++DG             ++KGD+  LS
Sbjct: 73  VTADEIDEINILNASILAMHRALDGLKLRPQAVIVDGNRFKPYGTLPHETIVKGDAKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           IAAASI+AK  RD  M     +YP Y +  + GYPT  H+  I+E G S  HR TF+ ++
Sbjct: 133 IAAASILAKTYRDDYMDNLALQYPAYQWKVNKGYPTKAHRAAIEEHGISPFHRKTFKGVK 192

Query: 206 NLSV 209
            + V
Sbjct: 193 EMLV 196


>gi|226227701|ref|YP_002761807.1| ribonuclease HII [Gemmatimonas aurantiaca T-27]
 gi|226090892|dbj|BAH39337.1| ribonuclease HII [Gemmatimonas aurantiaca T-27]
          Length = 228

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/194 (36%), Positives = 114/194 (58%), Gaps = 7/194 (3%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELY 72
           +E  +R +    + G+DEVGRG LAGPVV  AI++  +     G++DSK++ H+ R  L 
Sbjct: 7   IERTLRAQYGSLLVGVDEVGRGPLAGPVVACAIVMPADRRAIAGVDDSKRLDHRTRVTLA 66

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAV----ENLQVIPRSALIDGRSIPE 127
            +I   A+ +S+ +AS + +D+ NI+ AT+ A+  A+    + L   P   ++DG+ +  
Sbjct: 67  ARIRDHALALSLGAASAREVDRLNIYHATVLAMQRALARIPQRLGAEPHHVVVDGKPL-R 125

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            L     AV+KGD+    IA ASI+AKVTRDRLM    +++  Y ++ + GY T +H+  
Sbjct: 126 TLGVVHTAVVKGDAKCYGIACASIVAKVTRDRLMTALAQRHGHYAWERNAGYGTTQHRDG 185

Query: 188 IKEKGPSCIHRLTF 201
           I + G +  HR +F
Sbjct: 186 ISQHGLTAHHRRSF 199


>gi|78356141|ref|YP_387590.1| ribonuclease HII [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|97182419|sp|Q313K1|RNH2_DESDG RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|78218546|gb|ABB37895.1| RNase HII [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 263

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/209 (37%), Positives = 108/209 (51%), Gaps = 41/209 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPF---------GINDSKKISHKKREELYEKITSS 78
           GIDE GRG LAGPVV AA+IL P   P          G+ DSKK+S K+R  L   I S 
Sbjct: 43  GIDEAGRGCLAGPVVAAAVILPPAGAPAAPHIAAALSGLTDSKKLSEKRRLTLEPAIKSC 102

Query: 79  AI-ISISSASHQYIDKHNIHKATLDA-----------------------IYHAVENLQVI 114
           A+   +     Q ID+ NI +AT  A                       ++ AV+  + I
Sbjct: 103 AVRWGVGVVWPQVIDRINILQATYRAMSLAVRHLRGGGAAASMPAGLPPVFLAVDGDKTI 162

Query: 115 PRSAL--IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172
           P   L  + G S+P++      A++ GD   ++I+AAS++AK  RDRLM    K+Y  YG
Sbjct: 163 PGQVLQAVTGLSVPQE------AIVGGDGCVMAISAASVLAKTFRDRLMTALDKRYSGYG 216

Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           F +H GY TA H + I+  GP  +HRL+F
Sbjct: 217 FATHKGYGTAAHIEAIRRLGPCRMHRLSF 245


>gi|87125028|ref|ZP_01080875.1| Ribonuclease HII and HIII [Synechococcus sp. RS9917]
 gi|86167348|gb|EAQ68608.1| Ribonuclease HII and HIII [Synechococcus sp. RS9917]
          Length = 205

 Score =  118 bits (295), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/189 (38%), Positives = 108/189 (57%), Gaps = 17/189 (8%)

Query: 29  IDEVGRGALAGPVVVAAIIL-DPNN---IPFGINDSKKISHKKREELYEKITSSAII-SI 83
           +DEVGRG   GPV+ AA++L +P     +  G+ DSK++S ++R +L   I + A   ++
Sbjct: 1   MDEVGRGCWFGPVLAAAVVLSEPAASRLLAQGLTDSKRLSQRRRAQLVPLIEAEACAWAL 60

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF-----AVIK 138
             AS Q ID   I  AT  A+  A++ L   P   L+DG      LP + +      +++
Sbjct: 61  GQASAQDIDSGGIRAATELAMLRALQRLPRCPDQVLVDG-----VLPLRLWLGPQETIVR 115

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GDS   SIAAAS++AK  RD L++     +P+YG + H GY TA+H+Q +   GP+ +HR
Sbjct: 116 GDSHCASIAAASVLAKQARDGLIQRLACHFPEYGLERHAGYGTARHRQALLRHGPTPLHR 175

Query: 199 LTFRPLRNL 207
            TF  LR L
Sbjct: 176 RTF--LRKL 182


>gi|254519206|ref|ZP_05131262.1| ribonuclease HII [Clostridium sp. 7_2_43FAA]
 gi|226912955|gb|EEH98156.1| ribonuclease HII [Clostridium sp. 7_2_43FAA]
          Length = 270

 Score =  118 bits (295), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/188 (45%), Positives = 116/188 (61%), Gaps = 10/188 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI- 80
           +AG+DEVGRG LAGP+V  A+ILD N I       +NDSKK+S KKRE L E I   A+ 
Sbjct: 86  IAGVDEVGRGPLAGPIVACAVILDLNVIEDELILWLNDSKKLSEKKREALAEIIKEKALA 145

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKG 139
             IS +S+  ID+  I     +    A  ++++ P   L DG  I   ++P ++  VIKG
Sbjct: 146 YFISESSNDEIDEKGIAYCNNNIFLEACTSMKIKPELVLSDGYLIKGINIPNKS--VIKG 203

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D+ S SIAAASI+AKV RD LM+   K+YP Y F+ + GY T+KH + +KE G   IHR 
Sbjct: 204 DAKSASIAAASILAKVYRDNLMKDYSKEYPHYAFEENAGYGTSKHIEGLKEFGACKIHRR 263

Query: 200 TFRPLRNL 207
           +F  L+N+
Sbjct: 264 SF--LKNI 269


>gi|256390717|ref|YP_003112281.1| ribonuclease H [Catenulispora acidiphila DSM 44928]
 gi|256356943|gb|ACU70440.1| Ribonuclease H [Catenulispora acidiphila DSM 44928]
          Length = 224

 Score =  118 bits (295), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/190 (38%), Positives = 113/190 (59%), Gaps = 12/190 (6%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN---NIPFGINDSKKISHKKRE----ELYEKITSS 78
           VAG DE GRGA AGP+V AA+IL P     IP G++DSK ++ + R+    E+ ++  S 
Sbjct: 36  VAGTDEAGRGACAGPLVAAAVILRPGASGRIP-GLSDSKLLTERARDRVRVEIEKRALSY 94

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           A ++I +     +D   +H+A ++A+  +V  L V P   L DG  + + LPC + A+ K
Sbjct: 95  AWVAIPAPE---VDSRGLHQANIEALRRSVARLDVAPDYVLSDGFRV-DGLPCPSLAMWK 150

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD ++  +AAAS++AK  RD +M    +++P YGF+ H GY T  HQ  + E GP   HR
Sbjct: 151 GDQVAACVAAASVLAKTVRDAMMTELAQRHPAYGFEIHKGYSTPAHQAALTEHGPCPEHR 210

Query: 199 LTFRPLRNLS 208
            T+  + N+S
Sbjct: 211 FTYANVANVS 220


>gi|294867798|ref|XP_002765242.1| ribonuclease hii, putative [Perkinsus marinus ATCC 50983]
 gi|239865237|gb|EEQ97959.1| ribonuclease hii, putative [Perkinsus marinus ATCC 50983]
          Length = 630

 Score =  118 bits (295), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/196 (42%), Positives = 112/196 (57%), Gaps = 16/196 (8%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKK-REELYEKITSSAII-- 81
           V G+DE GRG L GPVV AA+ ++ +  IP+GI DSK IS+++ R+ +YE++T++  +  
Sbjct: 10  VIGVDEAGRGPLCGPVVAAAVYINQDTYIPYGICDSKTISNEEYRDMMYEQLTNNKGVKW 69

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS------ALIDGRSIP------EDL 129
           S+    ++ ID  NI +AT  A   AV  L             LIDG  +P       ++
Sbjct: 70  SVGIVDNKVIDTINILQATFTAKTEAVLKLTKDGEGRKSKYHVLIDGNRVPPQLLNNNNI 129

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             Q   ++KGDS    IAAASIIAKVTRDR+M   H   P Y    H GYPT  H  ++K
Sbjct: 130 NLQCTPIVKGDSKEYIIAAASIIAKVTRDRIMHHIHNNIPQYNVSQHKGYPTTAHIALLK 189

Query: 190 EKGPSCIHRLTFRPLR 205
             GPS  HRLTF PL+
Sbjct: 190 RLGPSKYHRLTFAPLK 205


>gi|262276832|ref|ZP_06054625.1| ribonuclease HII [alpha proteobacterium HIMB114]
 gi|262223935|gb|EEY74394.1| ribonuclease HII [alpha proteobacterium HIMB114]
          Length = 199

 Score =  118 bits (295), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/185 (41%), Positives = 109/185 (58%), Gaps = 5/185 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84
           V G+DEVGRG LAGPVV AA+IL P +  +  ++DSKK+S  KRE+ +E +   +   + 
Sbjct: 14  VVGVDEVGRGPLAGPVVSAAVIL-PLDFDYKCLDDSKKLSKVKREKAFEILKKKSKFKLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRS--ALIDGRSIPEDLPCQAFAVIKGDSI 142
            A    IDK NI +A+L ++  AV+    +P+    L+DG    +         IKGD+ 
Sbjct: 73  IAEVDEIDKINILQASLISMKRAVDQFD-LPKDHKILVDGPWSFDKTNQNIITKIKGDAK 131

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             SIAAASIIAKV RD++M    K +  Y +D++ GY T KH + IKE G +  HR +F 
Sbjct: 132 YPSIAAASIIAKVYRDQIMSKLSKNFVQYSWDTNSGYGTQKHLKAIKEHGITVHHRKSFA 191

Query: 203 PLRNL 207
           P+  +
Sbjct: 192 PIHKI 196


>gi|73852875|ref|YP_294159.1| putative ribonuclease [Emiliania huxleyi virus 86]
 gi|72415591|emb|CAI65828.1| putative ribonuclease [Emiliania huxleyi virus 86]
          Length = 209

 Score =  117 bits (294), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/192 (40%), Positives = 108/192 (56%), Gaps = 14/192 (7%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREELYEKIT-SSAIIS 82
           V G+DE GRG LAGPVV  A  + P N P    I DSKK++ K+R E +E +T +S I  
Sbjct: 22  VVGVDEAGRGCLAGPVVAGACFV-PENEPIHPLIKDSKKMTEKQRMEAFEYLTLNSNIKC 80

Query: 83  ISSASHQY-IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL----PCQAFAVI 137
            +S    Y ID  NI  AT+ A+ + +   +     AL+DG   P+        Q F  I
Sbjct: 81  YASFIEPYEIDDINILNATMKAMGNVIN--ESGANLALVDGDKTPKMFVDTSEIQTF--I 136

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCI 196
           KGDS   SI+ AS+IAKV+RD  M    K YP+YGF +H+GY T  H   I++ GP   +
Sbjct: 137 KGDSRMYSISCASVIAKVSRDLYMEELSKTYPEYGFANHMGYGTQAHMAAIEKNGPIPFV 196

Query: 197 HRLTFRPLRNLS 208
           HR ++ P++  +
Sbjct: 197 HRYSYAPIKKFT 208


>gi|317968686|ref|ZP_07970076.1| ribonuclease HII [Synechococcus sp. CB0205]
          Length = 191

 Score =  117 bits (294), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/187 (37%), Positives = 103/187 (55%), Gaps = 16/187 (8%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSA-I 80
           +AG+DEVGRG   GPV   A++L           G+ DSK +S K+R +L   I   A  
Sbjct: 3   IAGVDEVGRGCWFGPVFAGAVVLSDAARETLSAAGLTDSKALSAKRRSQLVPLILEQAES 62

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQV-IPRSALIDGRSIPEDLPCQAFA---- 135
            ++  AS Q +D   I  AT  A+  A++ L    P   L+DG     +LP + ++    
Sbjct: 63  WALGQASAQEVDGLGIRSATERAMLRALQRLGSPAPDHVLVDG-----NLPLRLWSGSQE 117

Query: 136 -VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            V++GDS  L IAAAS++AK  RD L+    ++YP YGF+ H GY TA+H+  +   GP+
Sbjct: 118 TVVRGDSAHLEIAAASVLAKQARDALLVRLGQRYPGYGFERHAGYGTAQHRAAVLSLGPT 177

Query: 195 CIHRLTF 201
            +HR +F
Sbjct: 178 QLHRRSF 184


>gi|258546183|ref|ZP_05706417.1| ribonuclease HII [Cardiobacterium hominis ATCC 15826]
 gi|258518608|gb|EEV87467.1| ribonuclease HII [Cardiobacterium hominis ATCC 15826]
          Length = 190

 Score =  117 bits (294), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/181 (44%), Positives = 108/181 (59%), Gaps = 2/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           +AG+DE GRGAL G V+ AA+IL  +     + DSKK+S ++RE LY  IT+ A+   ++
Sbjct: 2   IAGVDEAGRGALVGNVIAAAVILPASYELPDLTDSKKLSARQREALYAAITAQAVAWSAA 61

Query: 86  ASHQY-IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           A+    ID  NIH ATL A+  A+  L   P  ALIDG+  P  L   A A++ GD+   
Sbjct: 62  AATPAEIDTLNIHHATLLAMQRALAALNPPPSQALIDGKFTPT-LAIPARAIVGGDASEA 120

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            IAAASIIAKVTRDR M     +YP YGF +H GY T  H   +   G +  HR ++ P+
Sbjct: 121 CIAAASIIAKVTRDREMLALEARYPGYGFATHKGYGTQAHLAALARLGATPEHRRSYAPV 180

Query: 205 R 205
           R
Sbjct: 181 R 181


>gi|227535995|ref|ZP_03966044.1| ribonuclease H [Sphingobacterium spiritivorum ATCC 33300]
 gi|227244238|gb|EEI94253.1| ribonuclease H [Sphingobacterium spiritivorum ATCC 33300]
          Length = 198

 Score =  117 bits (294), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 73/177 (41%), Positives = 98/177 (55%), Gaps = 1/177 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+I   +     +NDSKK+S KKR  L   I   A+  +++S
Sbjct: 13  AGCDEAGRGCLAGPVFAAAVIFPKDYHHDLLNDSKKLSEKKRMALRPIIEQEALAFAVAS 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + IDK NIH A+  A++ A++ L+V     ++DG             +IKGD   LS
Sbjct: 73  VSAEEIDKINIHNASYLAMHRALDQLKVKAEYIIVDGNRFIPYPEVSHTCIIKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           IAAASI+AK  RD  M      +P Y +  + GYPT KH+  +   G +  HR TFR
Sbjct: 133 IAAASILAKTYRDEYMESIACDFPAYDWLQNKGYPTVKHRNAVLAYGLTPHHRKTFR 189


>gi|317059895|ref|ZP_07924380.1| ribonuclease HII [Fusobacterium sp. D12]
 gi|313685571|gb|EFS22406.1| ribonuclease HII [Fusobacterium sp. D12]
          Length = 210

 Score =  117 bits (294), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 75/182 (41%), Positives = 105/182 (57%), Gaps = 6/182 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84
           + G+DE GRG LAGPVV AA +L   +     I DSKK++ KKRE L+  I +   + I 
Sbjct: 21  IIGVDEAGRGPLAGPVVAAATLLKKYDASLEEIQDSKKLTEKKREALFSMIPNYFYVGIG 80

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSA--LIDGRSIPEDLPCQAFAVIKGD 140
            AS + I+ +NI  AT  A+  A+  L  Q+    A  L+DG     +   +  A++KGD
Sbjct: 81  RASVEEIEAYNILNATFLAMRRAIAQLEEQISIEDAIILVDGNFKIRECQRKQEAIVKGD 140

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHRL 199
           + SLSIA ASI+AKVTRD  +    K+YP+Y F+ H GY T  H++ I   G    +HR 
Sbjct: 141 AKSLSIATASIMAKVTRDHELLELAKQYPEYHFEKHKGYGTKMHREQILTLGAIPGVHRN 200

Query: 200 TF 201
           +F
Sbjct: 201 SF 202


>gi|34540527|ref|NP_905006.1| ribonuclease HII [Porphyromonas gingivalis W83]
 gi|38605679|sp|Q51832|RNH2_PORGI RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|34396840|gb|AAQ65905.1| ribonuclease HII [Porphyromonas gingivalis W83]
          Length = 201

 Score =  117 bits (293), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 76/179 (42%), Positives = 101/179 (56%), Gaps = 5/179 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
            G DE GRG LAGPV  AA+IL  +     +NDSK++S K+R  L   I S  I   I  
Sbjct: 14  CGCDEAGRGCLAGPVYAAAVILPADFSHPLLNDSKQLSEKQRYTLRPVIESETIGWGIGI 73

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143
            S Q ID+ NI +A+  A++ A+E L   P   LIDG      E +P     ++ GD+  
Sbjct: 74  VSPQEIDEINILRASFLAMHRAIEQLPFRPERLLIDGNRFDPFEQIPHHC--IVGGDARY 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            SIAAASI+AK  RD  M   +K +P YG++ + GYP+  H+  I+  G S  HRLTFR
Sbjct: 132 RSIAAASILAKTYRDDSMLRLNKDFPMYGWERNKGYPSPAHKSAIRRFGVSPHHRLTFR 190


>gi|257462226|ref|ZP_05626643.1| ribonuclease HII [Fusobacterium sp. D12]
          Length = 209

 Score =  117 bits (293), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 75/182 (41%), Positives = 105/182 (57%), Gaps = 6/182 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84
           + G+DE GRG LAGPVV AA +L   +     I DSKK++ KKRE L+  I +   + I 
Sbjct: 20  IIGVDEAGRGPLAGPVVAAATLLKKYDASLEEIQDSKKLTEKKREALFSMIPNYFYVGIG 79

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSA--LIDGRSIPEDLPCQAFAVIKGD 140
            AS + I+ +NI  AT  A+  A+  L  Q+    A  L+DG     +   +  A++KGD
Sbjct: 80  RASVEEIEAYNILNATFLAMRRAIAQLEEQISIEDAIILVDGNFKIRECQRKQEAIVKGD 139

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHRL 199
           + SLSIA ASI+AKVTRD  +    K+YP+Y F+ H GY T  H++ I   G    +HR 
Sbjct: 140 AKSLSIATASIMAKVTRDHELLELAKQYPEYHFEKHKGYGTKMHREQILTLGAIPGVHRN 199

Query: 200 TF 201
           +F
Sbjct: 200 SF 201


>gi|328948714|ref|YP_004366051.1| ribonuclease H [Treponema succinifaciens DSM 2489]
 gi|328449038|gb|AEB14754.1| Ribonuclease H [Treponema succinifaciens DSM 2489]
          Length = 199

 Score =  117 bits (293), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 75/196 (38%), Positives = 106/196 (54%), Gaps = 20/196 (10%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-NDSKKISHKKREELYEKITSSAIISIS 84
           + GIDE GRG LAGPV    ++L P + P  I NDSKK+S KKRE   + I   +   I 
Sbjct: 4   LVGIDEAGRGPLAGPVTAGCVLL-PIDFPVEILNDSKKLSEKKREAASDVIREKSCWGIG 62

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQV-IP----------------RSALIDGRSIP- 126
             S + ID+ NI +A   A+  A + +++ +P                   ++DG  +P 
Sbjct: 63  IVSEKIIDEINILQADFKAMKIAFDMMRMKLPAWCEKNKFNFEQCKNSMQIIVDGNMLPF 122

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            D      AVIK DS    + AASI+AKV RD++M    K YP+YG+  H GYPT  H++
Sbjct: 123 TDKNLDIKAVIKADSKFPCVMAASILAKVQRDKIMIDYDKLYPEYGYAKHKGYPTLAHKE 182

Query: 187 VIKEKGPSCIHRLTFR 202
           + +  GPS I RL+F+
Sbjct: 183 ICRRLGPSPIQRLSFK 198


>gi|281357062|ref|ZP_06243552.1| Ribonuclease H [Victivallis vadensis ATCC BAA-548]
 gi|281316620|gb|EFB00644.1| Ribonuclease H [Victivallis vadensis ATCC BAA-548]
          Length = 223

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/185 (45%), Positives = 114/185 (61%), Gaps = 6/185 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITS--SAIIS 82
           VAG+DEVGRG LAGPVV AA++  P  +P+ G+ DSK++    RE L  +I S     I 
Sbjct: 30  VAGVDEVGRGPLAGPVVAAAVVF-PRGVPWPGVYDSKQLKAADRERLDREIRSVPGVRIG 88

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I     + ID+ NI  AT  A+  AV     +    L+DGR + ++LPC + A++KGDS 
Sbjct: 89  IGEVPVEEIDRINILNATHRAMREAVLAAGEV-DFILVDGRPV-KNLPCPSRALVKGDSR 146

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           S SIAAASI+AKV RDRLM     ++P YGF  H GY TA H + ++  GP   HR +FR
Sbjct: 147 SASIAAASIVAKVYRDRLMDELDLRWPGYGFKEHKGYGTAAHLESLRRLGPCPAHRKSFR 206

Query: 203 PLRNL 207
           P+R +
Sbjct: 207 PVREI 211


>gi|170079067|ref|YP_001735705.1| ribonuclease HII [Synechococcus sp. PCC 7002]
 gi|169886736|gb|ACB00450.1| ribonuclease HII [Synechococcus sp. PCC 7002]
          Length = 200

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/184 (43%), Positives = 113/184 (61%), Gaps = 9/184 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAA----IILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
           +AG+DEVGRG L GPVV A      I +      G+ DSKK+S K+RE L  +I +    
Sbjct: 4   LAGVDEVGRGCLFGPVVAAVVVVNTIQEQALGELGVTDSKKLSAKRRETLVPQIQALVTD 63

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPE-DLPCQAFAVIK 138
            +I+SAS   ID+ NI +AT  A+  AVE LQ+ P    +DGR +IP+ + P QA  +I+
Sbjct: 64  WAIASASVAEIDQLNILQATFLAMTRAVEKLQIKPTEIFVDGRQTIPKLNYPQQA--IIQ 121

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GDS   +IAAASI+AKV RD+ +    + YP+Y   ++ GY T KH+Q I + G +  HR
Sbjct: 122 GDSKVKAIAAASILAKVQRDQDIIQLAEHYPEYDLANNKGYGTQKHRQAIWQYGLTPHHR 181

Query: 199 LTFR 202
            +F+
Sbjct: 182 QSFK 185


>gi|168061299|ref|XP_001782627.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665860|gb|EDQ52530.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 655

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/238 (36%), Positives = 119/238 (50%), Gaps = 36/238 (15%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGIND 59
           S+ + P  +LE  + E     VAG+DE GRG LAGPVV AA I+      P  I F ++ 
Sbjct: 412 SLKKFPSRDLEMKLWELGFRNVAGVDEAGRGPLAGPVVAAACIIPASATIPGKICFCVSQ 471

Query: 60  -SKKISHKKREELYEKITSSAIISISSASHQY------------------------IDKH 94
            S + S   +EE Y ++   A    +   H                          ID+ 
Sbjct: 472 WSCRASGPCQEEPYVRLNGVAQWKETFTVHHLWMSRELWCSWFRVAGQIHVVDAAKIDEI 531

Query: 95  NIHKATLDAIYHAVENLQV-----IPRSALIDGRSIPEDLPCQ-AFAVIKGDSISLSIAA 148
           NI +ATL A+   V+ L+       P   LIDG  IP++L  + A  VIKGD+    IAA
Sbjct: 532 NILQATLLAMSTCVKKLRKERGGEAPDYILIDGNRIPDELSKEEAQFVIKGDAECHVIAA 591

Query: 149 ASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           ASI+AKVTRDR+M    +++P YGF +H GY TA H   +   GP  IHR +F PL+ 
Sbjct: 592 ASILAKVTRDRMMVDYDRRWPVYGFKAHKGYGTAAHIGALLNHGPCDIHRRSFAPLKG 649


>gi|332665027|ref|YP_004447815.1| ribonuclease H [Haliscomenobacter hydrossis DSM 1100]
 gi|332333841|gb|AEE50942.1| Ribonuclease H [Haliscomenobacter hydrossis DSM 1100]
          Length = 199

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/179 (38%), Positives = 102/179 (56%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85
           AG DE GRG LAGPV  AA+IL  +     +NDSK+++ ++R EL   I +SA   +++ 
Sbjct: 13  AGCDEAGRGCLAGPVFAAAVILPKDFRHPLLNDSKQLTEQQRLELRCIIKASATCWAVAQ 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
                ID+ NI  A+  A++ A++ L+  P   L+DG             +IKGD I +S
Sbjct: 73  VDPAEIDQVNILNASFLAMHRALDKLETPPELILVDGNRFTPYRNIAHRCIIKGDGIYMS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M    + +P YG+  + GYPT  H++ ++  G +  HR +FR L
Sbjct: 133 IAAASILAKTYRDDYMADLAESHPQYGWSKNKGYPTKAHREALRHHGVTSHHRRSFRLL 191


>gi|317121802|ref|YP_004101805.1| ribonuclease H [Thermaerobacter marianensis DSM 12885]
 gi|315591782|gb|ADU51078.1| Ribonuclease H [Thermaerobacter marianensis DSM 12885]
          Length = 327

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/182 (43%), Positives = 109/182 (59%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRG LAGPVV AA+IL  +    G++DSK++    R+ L   +   A+  ++ 
Sbjct: 114 VAGVDEVGRGCLAGPVVAAAVILSGDACLPGLDDSKRLKPAARDGLAAAVRRQALAWAVG 173

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A+   ID  NI  AT  A+  A++ L V P+  ++DGRS P DL     AV+ GD+   
Sbjct: 174 IATPAEIDALNIWHATRLAMRRALDALPVPPQRVVVDGRS-PGDLGYPVEAVVDGDARFA 232

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAAS++AKV RD  M    + YP YGF  H GY TA+H+Q +   GP   HR +F P+
Sbjct: 233 AIAAASVVAKVFRDAWMARLDRVYPVYGFARHKGYATAEHRQALALYGPCPEHRRSFLPV 292

Query: 205 RN 206
           R 
Sbjct: 293 RQ 294


>gi|332519701|ref|ZP_08396165.1| Ribonuclease H [Lacinutrix algicola 5H-3-7-4]
 gi|332044260|gb|EGI80454.1| Ribonuclease H [Lacinutrix algicola 5H-3-7-4]
          Length = 199

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/184 (40%), Positives = 106/184 (57%), Gaps = 11/184 (5%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSAII-S 82
            G DE GRG LAGPV  AA+IL     NNI   +NDSKK+S  KRE L   I + AI  +
Sbjct: 13  CGTDEAGRGCLAGPVTAAAVILPKKFKNNI---LNDSKKLSKGKRELLKPIIENEAICYA 69

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGD 140
            +      ID+ NI  A++ A+  ++  L   P   ++DG       ++P +   +IKGD
Sbjct: 70  FTHVYENEIDEINILNASILAMQRSILELNPKPEFIIVDGNRFKPLNNIPFET--IIKGD 127

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S  LSIAAAS++AK  RD  M   H+++P Y +  + GYPT +H++ I++ G +  HR +
Sbjct: 128 SKYLSIAAASVLAKTYRDAYMLKIHEEFPMYNWKKNKGYPTKEHREAIRKYGITKYHRKS 187

Query: 201 FRPL 204
           FR L
Sbjct: 188 FRLL 191


>gi|325282798|ref|YP_004255339.1| Ribonuclease H [Deinococcus proteolyticus MRP]
 gi|324314607|gb|ADY25722.1| Ribonuclease H [Deinococcus proteolyticus MRP]
          Length = 215

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/199 (38%), Positives = 113/199 (56%), Gaps = 9/199 (4%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN---IPFGINDSKKISHK 66
           P + LE     +  + VAG+DE GRGA AGPV VAA+IL PN    +PF   DSK ++ +
Sbjct: 11  PDWSLERQHWVRGYFRVAGVDEAGRGAWAGPVTVAAVIL-PNTGAELPFA--DSKTLTAR 67

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +RE L E++   A+  ++  A    I++ NI  AT  A   A+  L   P++ + D   +
Sbjct: 68  QREMLAEEVRRVAVAWAVEYAWPDEIERLNILGATHAAAARALAALDPEPQALVTDYLRL 127

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
              LP    A  + D++S S+AAAS++AK  RD LM     +YP YGF +H GY   +H+
Sbjct: 128 RTPLPI--LAPPRADALSYSVAAASLLAKTERDALMTRLDAQYPGYGFAAHKGYGAPQHR 185

Query: 186 QVIKEKGPSCIHRLTFRPL 204
             + E G S +HR +FRP+
Sbjct: 186 AALDELGVSAVHRRSFRPI 204


>gi|189345575|ref|YP_001942104.1| ribonuclease HII [Chlorobium limicola DSM 245]
 gi|189339722|gb|ACD89125.1| Ribonuclease H [Chlorobium limicola DSM 245]
          Length = 299

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/188 (39%), Positives = 107/188 (56%), Gaps = 6/188 (3%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-----INDSKKISHKKREELYEKI 75
           +N   + GIDE GRG LAGPVV AA++      P       +NDSKK+S   R EL   I
Sbjct: 105 RNTELLCGIDEAGRGPLAGPVVAAAVVFPRWFTPETDRLSLLNDSKKLSPGLRTELASSI 164

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
            ++A+  + +    + ID+ NI  AT+ A+ +AV +L   P   L+DG      LP    
Sbjct: 165 KAAALHWATALIEPETIDRINIFHATMLAMNNAVTSLSETPELLLVDGNRFRPLLPIPYE 224

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            ++KGD+   SIAAAS++AK  RD +M+     YP YGF+ H GYPT +H + + + G S
Sbjct: 225 TIVKGDAKVFSIAAASVLAKTCRDTIMKEYALLYPQYGFEHHFGYPTGEHIRAVAQYGRS 284

Query: 195 CIHRLTFR 202
            IHR +F+
Sbjct: 285 PIHRKSFK 292


>gi|295836133|ref|ZP_06823066.1| ribonuclease HII [Streptomyces sp. SPB74]
 gi|197695228|gb|EDY42161.1| ribonuclease HII [Streptomyces sp. SPB74]
          Length = 233

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/177 (38%), Positives = 99/177 (55%), Gaps = 1/177 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAGIDEVGRGA AGPV V A +      P G+ DSK ++ K+R  L  ++       S+ 
Sbjct: 23  VAGIDEVGRGAWAGPVSVCAAVTGLRRAPEGLTDSKLLTPKRRAALVVELEKWVTAHSLG 82

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID   +  A   A   A++ L V P   ++DG       P     VIKGD   +
Sbjct: 83  HASPEEIDALGMTAALRLAAVRALDGLPVRPDWVILDGNHDYLGAPWNVRTVIKGDQSCV 142

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           S+AAAS++AKV RDRLM     ++ D+ F ++ GYP+  H+  + E+GP+  HRL++
Sbjct: 143 SVAAASVLAKVARDRLMAELGAQHEDFAFAANAGYPSPAHKTALAERGPTPYHRLSW 199


>gi|120437251|ref|YP_862937.1| ribonuclease HII [Gramella forsetii KT0803]
 gi|189043601|sp|A0M5H5|RNH2_GRAFK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|117579401|emb|CAL67870.1| ribonuclease HII [Gramella forsetii KT0803]
          Length = 198

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 105/182 (57%), Gaps = 5/182 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG DE GRG LAGPV  AA+IL        +NDSK ++ K R  L   I   AI   ++
Sbjct: 11  VAGADEAGRGCLAGPVTAAAVILPIEFKNAVLNDSKTLNLKNRNFLKSLIEDEAITYGVA 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSI 142
               + ID+ NI  A++ A++ A++ L+  P   ++DG      + +P +   +IKGD  
Sbjct: 71  HVFMKEIDEINILNASILAMHRALQVLKFDPDHIIVDGNRFKPYQKIPHEC--IIKGDGK 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            +SIAAASI+AK  RD  M   H+++PDY +  + GYPT +H+  IK+ G +  HR +F+
Sbjct: 129 YMSIAAASILAKTYRDEFMEKIHEEFPDYNWKKNKGYPTKEHRAAIKKYGVTKYHRKSFK 188

Query: 203 PL 204
            L
Sbjct: 189 LL 190


>gi|320334228|ref|YP_004170939.1| Ribonuclease H [Deinococcus maricopensis DSM 21211]
 gi|319755517|gb|ADV67274.1| Ribonuclease H [Deinococcus maricopensis DSM 21211]
          Length = 210

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/198 (37%), Positives = 110/198 (55%), Gaps = 7/198 (3%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKK 67
           P F LE     +  + VAG+DE GRGA AGP+ VAA+IL   P ++PF   DSK +S  +
Sbjct: 3   PDFSLERQHWARGFFRVAGVDEAGRGAWAGPLTVAAVILPATPTDLPF--RDSKTLSAAQ 60

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           RE L  ++   A+  ++  A    ID+ N+  AT  A   A+  L+V P++ + D   + 
Sbjct: 61  REALAAEVRRVAVAWAVEFAEADEIDRLNVLGATHAAALRALRRLEVAPQALITDYLRLR 120

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            DLP    A  + D++S S+AAAS++AK  RDR M      +P YGF +H GY  + H+ 
Sbjct: 121 TDLPL--LAPPRADALSYSVAAASLLAKTERDRRMVELDALHPGYGFAAHKGYGVSAHRA 178

Query: 187 VIKEKGPSCIHRLTFRPL 204
            +   G S  HR +F P+
Sbjct: 179 ALDRLGVSDEHRRSFGPV 196


>gi|257784502|ref|YP_003179719.1| Ribonuclease H [Atopobium parvulum DSM 20469]
 gi|257473009|gb|ACV51128.1| Ribonuclease H [Atopobium parvulum DSM 20469]
          Length = 257

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 10/202 (4%)

Query: 8   ERPHFE---LEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           E+ H E   +E M R +  +     V G+DEVGRG++AGP+ V A+ L    I +G+NDS
Sbjct: 47  EKEHVEKIRVEEMYRFQKEFSGGGLVVGVDEVGRGSVAGPLTVCAVCLPDEPIIYGLNDS 106

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           KK++  KRE L E+I   A  I I+  S Q ID+  + +   DA+  AV+N  + P   L
Sbjct: 107 KKLTATKREILAEQIQEVATAIGIAHISPQRIDEVGMAQCLRDAMLQAVKNTGIEPDCVL 166

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           IDG   P  +  +   ++KGD+   SIAAASI+AKVTRD LM    ++YP Y      GY
Sbjct: 167 IDGN--PMHIHPKEKTLVKGDARIASIAAASIVAKVTRDALMVAYDEEYPGYYLAECKGY 224

Query: 180 PTAKHQQVIKEKGPSCIHRLTF 201
            +A+H + I EKG S IHR +F
Sbjct: 225 ASAEHIKAIGEKGLSPIHRASF 246


>gi|21224156|ref|NP_629935.1| ribonuclease HII [Streptomyces coelicolor A3(2)]
 gi|7227921|sp|O69989|RNH2_STRCO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|3036877|emb|CAA18510.1| probable ribonuclease HII [Streptomyces coelicolor A3(2)]
          Length = 233

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/183 (38%), Positives = 104/183 (56%), Gaps = 1/183 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL-YEKITSSAIISIS 84
           +AG+DEVGRGA AGPV V A I      P G+ DSK ++ K+R EL  E  T     ++ 
Sbjct: 23  IAGVDEVGRGAWAGPVTVCAAITGLRRPPVGLTDSKLLTIKRRTELEVELRTWVTSYALG 82

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID   +  A   A   A+  L V P + ++DG+      P +   VIKGD   +
Sbjct: 83  HASPEEIDAMGMTAALRLAAVRALGTLPVRPDAVILDGKHDYLGAPWRVRTVIKGDQSCI 142

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           ++AAAS++AKV RD++M      + D+GF  + GYP+  H+  ++E+GP+  HRL++  L
Sbjct: 143 AVAAASVLAKVQRDKMMAELGVDHADFGFADNAGYPSPVHKAALEERGPTPHHRLSWAYL 202

Query: 205 RNL 207
             L
Sbjct: 203 DAL 205


>gi|223986426|ref|ZP_03636431.1| hypothetical protein HOLDEFILI_03743 [Holdemania filiformis DSM
           12042]
 gi|223961622|gb|EEF66129.1| hypothetical protein HOLDEFILI_03743 [Holdemania filiformis DSM
           12042]
          Length = 207

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/196 (37%), Positives = 106/196 (54%), Gaps = 12/196 (6%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           E++ W     V GIDE GRG +AGP+VVA  + D       I DSK +S KKRE+L+  I
Sbjct: 10  ERSFWDQGKHVVGIDEAGRGPIAGPLVVAGAVFDIGYANSEIYDSKALSEKKREKLFSLI 69

Query: 76  TSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ-- 132
              A    I   + + ID  NI++AT  A+       ++   + L D   +   L C   
Sbjct: 70  LREARCYKIKIVTPEEIDTLNIYRATQKAMEEIA--CEINAEAVLTDAMPL---LHCSKP 124

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD  SLSIAA SI+AKV RD +M    + YPDYGF  H GYPT  H + +++ G
Sbjct: 125 TLSIIKGDQKSLSIAAGSILAKVVRDHIMLGYDRLYPDYGFARHKGYPTKAHLEAMEKYG 184

Query: 193 PSCIHRLTFRPLRNLS 208
               +R ++ P+  ++
Sbjct: 185 VLPFYRKSYGPVARMN 200


>gi|308276686|gb|ADO26585.1| ribonuclease HII [Corynebacterium pseudotuberculosis I19]
          Length = 204

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 94/174 (54%), Gaps = 4/174 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREEL 71
            E  + +  + PVAGIDE GRG+  GP+ +AA IL    I     + DSKK+S + REEL
Sbjct: 31  FEGTLEKWGLGPVAGIDEAGRGSCCGPITIAACILPSRPIAALATLTDSKKLSSRMREEL 90

Query: 72  YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y  I   A+  SI   S   ID++ I  A +  +  A+  L   P   LID   +P  L 
Sbjct: 91  YPLIKKYAVAWSILHISASEIDRYGIQHANISGMRRAIALLSKQPGYVLIDAMRVP-GLT 149

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           C +  +I GD+ +  IAAAS++AK +RD LM    ++YP YG   H GY T  H
Sbjct: 150 CPSLPIIGGDTAARCIAAASVLAKQSRDELMIDLDREYPGYGLGDHKGYGTKSH 203


>gi|254467826|ref|ZP_05081232.1| ribonuclease HII [beta proteobacterium KB13]
 gi|207086636|gb|EDZ63919.1| ribonuclease HII [beta proteobacterium KB13]
          Length = 179

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/178 (46%), Positives = 109/178 (61%), Gaps = 4/178 (2%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSA 86
           GIDEVGRG +AGPVV AA+++D +     ++DSK +S K+RE L ++I    +  SIS  
Sbjct: 4   GIDEVGRGCVAGPVVAAAVVIDES-FDVLVSDSKLLSAKRRESLDKEIKKKCVDFSISVI 62

Query: 87  SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSI 146
           + + +D+ NIHKA+L A+  A  NL     S   DG+  P+     A A + GD +   I
Sbjct: 63  NSKIVDEINIHKASLLAMEQAYINLCHQSGSIKCDGKFTPK--IDGAVAHVNGDKLYTEI 120

Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +AASIIAKV RD LM     KYPDY FD H GY T  H + I++ GP  IHRLTF+P 
Sbjct: 121 SAASIIAKVYRDHLMNYISLKYPDYHFDKHKGYLTKLHLEAIEQYGPCNIHRLTFKPF 178


>gi|167753859|ref|ZP_02425986.1| hypothetical protein ALIPUT_02144 [Alistipes putredinis DSM 17216]
 gi|167658484|gb|EDS02614.1| hypothetical protein ALIPUT_02144 [Alistipes putredinis DSM 17216]
          Length = 198

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 99/178 (55%), Gaps = 1/178 (0%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           P AG DE GRG LAGPV  AA++L P+     +NDSK+++ ++R+ L   +   A+  + 
Sbjct: 11  PEAGCDEAGRGCLAGPVFAAAVMLPPDFSHPLLNDSKQMTARQRDLLRAIVEREALAWVV 70

Query: 85  SA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
            A S + ID+ NI  A+ + +  AV  L + P    IDG      L      ++KGD   
Sbjct: 71  KAVSAERIDQINILNASFEGMSLAVAELPIRPGFLAIDGNRFRTTLDIPYRCIVKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             IAAAS++AK  RD  M      +P+YG++ + GYPT +H+  I+  G +  HRLTF
Sbjct: 131 ADIAAASVLAKTHRDEYMERLAGDFPEYGWERNKGYPTREHRLAIRRYGLTPHHRLTF 188


>gi|241896010|ref|ZP_04783306.1| ribonuclease HII [Weissella paramesenteroides ATCC 33313]
 gi|241870741|gb|EER74492.1| ribonuclease HII [Weissella paramesenteroides ATCC 33313]
          Length = 254

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/204 (39%), Positives = 123/204 (60%), Gaps = 12/204 (5%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           +R +FE +A  + K    VAGIDEVGRG LAGPVV AA+++D +     ++DSK++S K 
Sbjct: 57  KRLNFERKAWQQGK---VVAGIDEVGRGPLAGPVVAAAVVIDDSFDMTIVHDSKQLSEKT 113

Query: 68  RE----ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
           R+    E+ EK+   A   + +     ID+ NI++A+  A+  +VE L V     LID  
Sbjct: 114 RQSIDTEIREKVVDFAFGVVDAKD---IDRLNIYEASRVAMRQSVEALSVPIDGLLIDAM 170

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           ++  ++P +   +IKGD  S+SI AASI+AK  RD LM+   +++P YGF+ + GY TA+
Sbjct: 171 TVDLEIPQEK--LIKGDDRSISIGAASILAKNYRDNLMKDFAQQFPGYGFEHNAGYGTAE 228

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H   +   G + IHR +F P++  
Sbjct: 229 HLAGLNTLGITPIHRKSFAPVKKF 252


>gi|91218354|ref|ZP_01255298.1| ribonuclease HII [Psychroflexus torquis ATCC 700755]
 gi|91183492|gb|EAS69891.1| ribonuclease HII [Psychroflexus torquis ATCC 700755]
          Length = 197

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/180 (40%), Positives = 104/180 (57%), Gaps = 5/180 (2%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSA 86
           G DE GRG LAGPV  AA+IL  +     + DSK +S  KRE L   +  S++   I+  
Sbjct: 14  GTDEAGRGCLAGPVTAAAVILPKDFKNELLTDSKLLSSSKREFLEVILKESSVSFGIAHI 73

Query: 87  SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSISL 144
             + ID+ NI  A++ A++ +++ L   P   L+DG       ++P Q   +IKGDS  L
Sbjct: 74  MMETIDEINILNASIKAMHASIQQLTPDPELILVDGNRFHTYPNIPHQC--IIKGDSKFL 131

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASI AK  RD  M+   K++P YG+  + GYPT  H++ I+E G +  HR +F+ L
Sbjct: 132 SIAAASIFAKTARDAYMKTIDKEFPMYGWAQNKGYPTKAHRKAIREYGITKYHRQSFKLL 191


>gi|304316917|ref|YP_003852062.1| ribonuclease H [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302778419|gb|ADL68978.1| Ribonuclease H [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 245

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/181 (44%), Positives = 107/181 (59%), Gaps = 2/181 (1%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
           N   + G+DEVGRG LAGPVV   ++L  +     +NDSKK+  +KRE L E I  +AI 
Sbjct: 56  NYKAIGGVDEVGRGPLAGPVVAGCVVLPKDVFIPDVNDSKKLGEEKRELLSEVIKKNAIA 115

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             I    ++YID  NI  +T +A+  A+  + V     LID   IP ++      +IKGD
Sbjct: 116 YGIGIIDNEYIDSVNILNSTYEAMRIAISKIDVEIDCLLIDAVKIP-NIDIMQKPIIKGD 174

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
             S+SIAAASIIAKV RD LM+   + YP YGF  + GY T +H + IK+ GP  IHR T
Sbjct: 175 MKSISIAAASIIAKVERDNLMKKYDELYPQYGFKKNKGYGTKEHIEAIKKYGPCPIHRKT 234

Query: 201 F 201
           F
Sbjct: 235 F 235


>gi|326798587|ref|YP_004316406.1| ribonuclease H [Sphingobacterium sp. 21]
 gi|326549351|gb|ADZ77736.1| Ribonuclease H [Sphingobacterium sp. 21]
          Length = 200

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/179 (40%), Positives = 107/179 (59%), Gaps = 5/179 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+I   +     +NDSK +S  +R +L E I + A+  +++S
Sbjct: 13  AGCDEAGRGCLAGPVFAAAVIFSSSFKHGILNDSKILSAAQRYDLREMIENEALAFAVAS 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143
           AS + ID+ NI  A+  A++ A++ L++     L+DG      +++P Q   VIKGD   
Sbjct: 73  ASAEEIDQINILNASFLAMHRALDALKMQAEYILVDGNRFRRYQNIPHQC--VIKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           LSIAAASI+AK  RD  M     ++P+Y +  + GYPT +H+  + + G +  HR TFR
Sbjct: 131 LSIAAASILAKTYRDDYMDNLANEHPEYDWLKNKGYPTKRHRDAVLKYGLTPHHRKTFR 189


>gi|238810213|dbj|BAH70003.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 217

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 110/192 (57%), Gaps = 8/192 (4%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEK 74
           EK  +P    + G+DE GRG  AGP+VV  +I+  N N P  I DSK++S K+REE  E 
Sbjct: 24  EKENYPDTKLIVGLDEAGRGCCAGPLVVGCVIMPQNFNHPL-IKDSKQLSQKQREEALEI 82

Query: 75  ITSSAIISISSA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I  +AI ++++  + Q +D+ N  +A+   +   +  L   P   + D   I  D+    
Sbjct: 83  ILENAIETVTTIINAQEVDQLNPKQASRIGMQRCINKLNTKPELVITDFEKI-NDINIPQ 141

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             ++KGD +S+++AAASI+AKVTRD +M    KK+P Y F  + GY T +H+  + + G 
Sbjct: 142 INLVKGDQLSINVAAASILAKVTRDLIMVGIDKKFPMYNFKKNKGYCTKEHEAAMSQYGI 201

Query: 194 SCIHRLTFRPLR 205
              HR +++ ++
Sbjct: 202 CEFHRKSYKNVK 213


>gi|26554469|ref|NP_758403.1| ribonuclease HII [Mycoplasma penetrans HF-2]
 gi|26454479|dbj|BAC44807.1| ribonuclease HII [Mycoplasma penetrans HF-2]
          Length = 218

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/213 (36%), Positives = 115/213 (53%), Gaps = 10/213 (4%)

Query: 1   MFCN-----SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF 55
           MF N     +I +   F+ +  +REK    + G+DEVGRG +AGP+VV  +IL+PN    
Sbjct: 1   MFLNIVVRINIMKNKLFDFDNSLREK-YKNIIGLDEVGRGCIAGPLVVVGVILNPNFFDD 59

Query: 56  GINDSKKI-SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQV 113
            I DSK I S + R+EL   I  ++I   I   +   +D+    +A++  +      L  
Sbjct: 60  RIKDSKLIKSIELRKELKNLILKNSISYQIEVVNSNIVDQLGPKQASVKGMTKIANGLIN 119

Query: 114 IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173
                L D   I +DL      ++KGD+ S +IA ASIIAK TRD  M     KYP+Y F
Sbjct: 120 DYDLCLTDFEKI-KDLEKPQMNLVKGDNTSFTIACASIIAKSTRDDYMEELDNKYPNYLF 178

Query: 174 DSHVGYPTAKHQQVIKEKGP-SCIHRLTFRPLR 205
            +H GY T KH Q+I + GP   +HR +++P++
Sbjct: 179 KNHQGYLTKKHLQLIHQYGPIKEVHRFSYKPIK 211


>gi|318059574|ref|ZP_07978297.1| ribonuclease HII [Streptomyces sp. SA3_actG]
 gi|318075436|ref|ZP_07982768.1| ribonuclease HII [Streptomyces sp. SA3_actF]
          Length = 233

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/177 (38%), Positives = 100/177 (56%), Gaps = 1/177 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAGIDEVGRGA AGPV V A +      P G+ DSK ++ K+R  L  ++       S+ 
Sbjct: 23  VAGIDEVGRGAWAGPVSVCAAVTGLRRPPEGLTDSKLLTPKRRVALVVELERWVTAHSLG 82

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID+  +  A   A   A++ L V P   ++DG       P     VIKGD   +
Sbjct: 83  HASPEEIDELGMTAALRLAAGRALDGLPVRPDWVILDGNHDYLGAPWNVRTVIKGDQSCV 142

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           S+AAAS++AKV RDRLM     ++ D+ F ++ GYP+  H+  + E+GP+  HRL++
Sbjct: 143 SVAAASVLAKVARDRLMAELGAQHEDFAFAANAGYPSPAHKTALAERGPTPYHRLSW 199


>gi|308190329|ref|YP_003923260.1| ribonuclease H [Mycoplasma fermentans JER]
 gi|319777726|ref|YP_004137377.1| ribonuclease [Mycoplasma fermentans M64]
 gi|307625071|gb|ADN69376.1| ribonuclease H [Mycoplasma fermentans JER]
 gi|318038801|gb|ADV35000.1| Ribonuclease [Mycoplasma fermentans M64]
          Length = 198

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 110/192 (57%), Gaps = 8/192 (4%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEK 74
           EK  +P    + G+DE GRG  AGP+VV  +I+  N N P  I DSK++S K+REE  E 
Sbjct: 5   EKENYPDTKLIVGLDEAGRGCCAGPLVVGCVIMPQNFNHPL-IKDSKQLSQKQREEALEI 63

Query: 75  ITSSAIISISSA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I  +AI ++++  + Q +D+ N  +A+   +   +  L   P   + D   I  D+    
Sbjct: 64  ILENAIETVTTIINAQEVDQLNPKQASRIGMQRCINKLNTKPELVITDFEKI-NDINIPQ 122

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             ++KGD +S+++AAASI+AKVTRD +M    KK+P Y F  + GY T +H+  + + G 
Sbjct: 123 INLVKGDQLSINVAAASILAKVTRDLIMVGIDKKFPMYNFKKNKGYCTKEHEAAMSQYGI 182

Query: 194 SCIHRLTFRPLR 205
              HR +++ ++
Sbjct: 183 CEFHRKSYKNVK 194


>gi|182416696|ref|ZP_02948097.1| ribonuclease HII [Clostridium butyricum 5521]
 gi|237668559|ref|ZP_04528543.1| ribonuclease HII (RNase HII) [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182379458|gb|EDT76951.1| ribonuclease HII [Clostridium butyricum 5521]
 gi|237656907|gb|EEP54463.1| ribonuclease HII (RNase HII) [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 273

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/187 (43%), Positives = 109/187 (58%), Gaps = 8/187 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITSSAI- 80
           +AG+DEVGRG LAGP+V   ++LD N     +   +NDSKK+   KREEL E I   A+ 
Sbjct: 86  IAGVDEVGRGPLAGPIVACCVMLDLNVLDDELILYLNDSKKLKESKREELAEIIKEKAVC 145

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             IS  S+  ID+  I  A       +  +L + P   L DG  + + +  +  +VIKGD
Sbjct: 146 FKISECSNYEIDEIGIGVANNKVFLESCNSLSIKPDLVLSDGY-LVKGIEIENKSVIKGD 204

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           + S  IAAASIIAKV RD LM+   KKY  Y F+++ GY TAKH   I+E G   IHR +
Sbjct: 205 TKSACIAAASIIAKVYRDNLMKEYAKKYSCYDFENNAGYGTAKHMNAIREHGKCEIHRNS 264

Query: 201 FRPLRNL 207
           F  L+NL
Sbjct: 265 F--LKNL 269


>gi|160903112|ref|YP_001568693.1| ribonuclease H [Petrotoga mobilis SJ95]
 gi|160360756|gb|ABX32370.1| Ribonuclease H [Petrotoga mobilis SJ95]
          Length = 208

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/192 (39%), Positives = 106/192 (55%), Gaps = 15/192 (7%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELYEKITSSAI 80
           + GIDE GRG LAGPV V A++++           G  DSK +S K+RE  Y +IT +  
Sbjct: 16  IIGIDEAGRGPLAGPVFVGAVVIESKKEGELLAKIG-KDSKSLSPKQRERRYFQITRNFK 74

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA-----LIDGRSIPEDLPCQAFA 135
              + ++ Q ID+ NI KAT  A+   +E  +++  +A     +IDG+    D       
Sbjct: 75  YYSNFSTSQLIDEINIFKATELAMIKLLE--KIVEENANDYYVIIDGKFFKLDYNYDC-- 130

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           ++KGD  S  I AASI+AK  RD  M   H+ YP+YGF +H GYPT KH + IK+ G   
Sbjct: 131 IVKGDQTSPLIGAASIVAKYERDIYMNQLHELYPNYGFITHKGYPTRKHIESIKKYGIIS 190

Query: 196 IHRLTFRPLRNL 207
            HR TF P++  
Sbjct: 191 EHRKTFNPIKRF 202


>gi|319952346|ref|YP_004163613.1| ribonuclease h [Cellulophaga algicola DSM 14237]
 gi|319421006|gb|ADV48115.1| Ribonuclease H [Cellulophaga algicola DSM 14237]
          Length = 198

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/181 (38%), Positives = 102/181 (56%), Gaps = 7/181 (3%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSA 86
           G DE GRG LAGPV  AA++L  N     +NDSKK+S  KR  L   I   A+  +++  
Sbjct: 13  GTDEAGRGCLAGPVTAAAVVLPENFTNTLLNDSKKLSEIKRFSLKPIIEEFALSFAVTHI 72

Query: 87  SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA---VIKGDSIS 143
               ID  NI  A++ A+  +V  L    R  ++DG       P + ++   +IKGD   
Sbjct: 73  EPLIIDDINILNASILAMQKSVLKLDTTARHIIVDGNRFK---PMKNYSYDCIIKGDGKY 129

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           +SIAAASI+AK  RD +M + H+++P Y +  + GYPT +H+  I++ G +  HR +FR 
Sbjct: 130 MSIAAASILAKTYRDEVMNVLHEEFPMYNWKQNKGYPTKEHRAAIRKYGITKYHRKSFRQ 189

Query: 204 L 204
           L
Sbjct: 190 L 190


>gi|71892067|ref|YP_277797.1| ribonuclease HII [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|97182291|sp|Q493B8|RNH2_BLOPB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|71796173|gb|AAZ40924.1| ribonuclease HII [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 217

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/206 (41%), Positives = 117/206 (56%), Gaps = 5/206 (2%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           SI +  + E+   +  K    +AG+DE G G+L G V+ AA+IL       G+ DSK ++
Sbjct: 6   SIVQVKNNEIPKTLSIKKFKLIAGVDESGCGSLVGSVIAAAVILHSIQPISGLADSKTLN 65

Query: 65  HKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
             KR  LY+ I  +A+  SI  A    ID+ NI +A L A+  AV NL V P   LIDG 
Sbjct: 66  KNKRLNLYKNIIKNALAWSIGYADVTEIDRSNILEARLLAMKRAVHNLSVKPDLILIDGN 125

Query: 124 SIP--EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
             P   ++P Q F   KGD+    I+AASIIAKVTRD+ M I  K+YP YGF  + GYPT
Sbjct: 126 RSPGFTEIPYQCFN--KGDARIAIISAASIIAKVTRDQDMIILDKQYPKYGFAQNKGYPT 183

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207
             H + +   GP   HR +F P++++
Sbjct: 184 FFHLKQLALYGPISQHRKSFAPVKHV 209


>gi|332878922|ref|ZP_08446637.1| ribonuclease HII [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332683273|gb|EGJ56155.1| ribonuclease HII [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 198

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/186 (37%), Positives = 105/186 (56%), Gaps = 3/186 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL P+     + DSK+++ K+R++L   I   A+  ++  
Sbjct: 12  AGTDEAGRGCLAGPVTAAAVILPPDFHNELLTDSKQLTEKQRDQLRPIIEREAVAYAVCH 71

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
                ID+ NI +A++ A++ A+  L V+P    +DG             V+KGD    +
Sbjct: 72  VLPAEIDELNILRASITAMHRAIAQLSVVPTFIAVDGNKFVRYAQIPYACVVKGDGKIQT 131

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR--P 203
           IAAASI+AK  RD  M     ++P+Y +  + GYPT +H++ I E G +  HR TF+  P
Sbjct: 132 IAAASILAKTYRDAYMSDLALQFPEYHWQQNKGYPTPEHRRAIAEYGATPHHRKTFQLLP 191

Query: 204 LRNLSV 209
           +  LS+
Sbjct: 192 VEQLSL 197


>gi|319955897|ref|YP_004167160.1| rnase hii [Nitratifractor salsuginis DSM 16511]
 gi|319418301|gb|ADV45411.1| RNase HII [Nitratifractor salsuginis DSM 16511]
          Length = 205

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/183 (39%), Positives = 104/183 (56%), Gaps = 4/183 (2%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
           E+  + + GIDE GRG LAGP+VVA +IL    I  G+ DSK++S ++RE+LY +I   +
Sbjct: 16  EEEAFTLCGIDEAGRGPLAGPLVVAGVIL-LRRIN-GLQDSKRLSAQEREKLYGRIVERS 73

Query: 80  IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
              +       ID   I +    A+   VE L       L DG S    +P  A  ++K 
Sbjct: 74  RYHLVIIEASRIDDWGISRCLRKALEEIVEVLGGEGVHFLFDGNS-RYGVPGIA-TMVKA 131

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D     ++AASI+AKVTRDR+M    ++YP+YGF+ H GY TA+H + I+  G   IHR 
Sbjct: 132 DGKVKEVSAASILAKVTRDRIMEALAREYPEYGFEEHKGYGTARHLEAIERFGCCPIHRR 191

Query: 200 TFR 202
           +F+
Sbjct: 192 SFQ 194


>gi|309775665|ref|ZP_07670664.1| ribonuclease HII [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916571|gb|EFP62312.1| ribonuclease HII [Erysipelotrichaceae bacterium 3_1_53]
          Length = 207

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/194 (37%), Positives = 106/194 (54%), Gaps = 4/194 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E    ++    + GIDE GRG +AGP+VVAA+   P      I DSKK+S KKR  L+
Sbjct: 6   EYEQAWWQQGKTCIVGIDEAGRGPIAGPLVVAAVAFPPGYFHEEIYDSKKLSDKKRRALF 65

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           + +   A    I+      ID+ NI++AT +A+    E    +    L D   +P +   
Sbjct: 66  QDVIHQAKEYHIAIIEPAIIDELNIYRATQNAMQTLSEQFS-MADGVLTDAMPLPGNTK- 123

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              +++KGD  S+SIAAASI+AKVTRD +M    K+YP YGF  H GYPT  H + +   
Sbjct: 124 DVISLVKGDQKSVSIAAASILAKVTRDCIMEAYDKQYPQYGFARHKGYPTKAHIEALHTY 183

Query: 192 G-PSCIHRLTFRPL 204
           G    ++R ++ P+
Sbjct: 184 GVVKGLYRESYGPV 197


>gi|218245925|ref|YP_002371296.1| Ribonuclease H [Cyanothece sp. PCC 8801]
 gi|257058973|ref|YP_003136861.1| ribonuclease H [Cyanothece sp. PCC 8802]
 gi|218166403|gb|ACK65140.1| Ribonuclease H [Cyanothece sp. PCC 8801]
 gi|256589139|gb|ACV00026.1| Ribonuclease H [Cyanothece sp. PCC 8802]
          Length = 205

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/183 (43%), Positives = 112/183 (61%), Gaps = 5/183 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI- 80
           +AG+DEVGRG L GPVV A +++  ++  +    G+ DSK++S KKR +L ++I   A  
Sbjct: 14  IAGVDEVGRGTLFGPVVAAVVVIPVSSTTYLQEIGVKDSKQLSAKKRLKLAQEIKIVAKG 73

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             IS AS + ID+ NI +A+L A+  AV +L V P   L+DGR    DL      +I GD
Sbjct: 74  YHISYASVKEIDRLNILQASLLAMKRAVLHLSVEPAICLVDGRQKIPDLTIPQQTIIGGD 133

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
            +S  IAAASI+AKV RD L+     KYP Y   ++ GY T KH+  +++ G S  HRL+
Sbjct: 134 RLSPIIAAASILAKVWRDELIIRLDAKYPQYDLANNKGYGTLKHRLALEKYGVSPQHRLS 193

Query: 201 FRP 203
           FRP
Sbjct: 194 FRP 196


>gi|313681315|ref|YP_004059053.1| RNAase hii [Sulfuricurvum kujiense DSM 16994]
 gi|313154175|gb|ADR32853.1| RNase HII [Sulfuricurvum kujiense DSM 16994]
          Length = 182

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/183 (39%), Positives = 97/183 (53%), Gaps = 18/183 (9%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           + GIDE GRG LAGP+ +A +IL  NN   G+NDSKK++ KKRE LYE I  ++I  I+ 
Sbjct: 3   LCGIDEAGRGPLAGPLTIAGVIL--NNPIEGLNDSKKLTEKKRESLYELICENSIYHIAR 60

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV------IKG 139
                ID+  + +     +   +  L       L DG S         F V      +K 
Sbjct: 61  FDAAQIDELGLSQCLATGLREIMSALG--EADYLYDGNS--------KFGVSGLRTMVKA 110

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D+    ++AASI+AKVTRDR M      YP YGFD H GY  A H + I++ G   IHR 
Sbjct: 111 DATVPEVSAASILAKVTRDREMIQLASLYPQYGFDGHKGYGCAAHIEAIRQYGYCEIHRK 170

Query: 200 TFR 202
           TF+
Sbjct: 171 TFK 173


>gi|313623979|gb|EFR94078.1| ribonuclease HII [Listeria innocua FSL J1-023]
          Length = 261

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/185 (43%), Positives = 111/185 (60%), Gaps = 3/185 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           +AG+DEVGRG LAGPVV AA+IL  +    GINDSK+++  KR+ L+E I   AI     
Sbjct: 73  IAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLNEAKRDMLFEVIKKEAISIGIG 132

Query: 86  ASHQYIDKH-NIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
                I    NI++AT  A+  A+  L   P   LID  ++P        ++IKGD+ S+
Sbjct: 133 IIDHDIIDQVNIYEATKIAMREALVKLNPAPDFVLID--AMPLKYSEAELSLIKGDTKSI 190

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASIIAKVTRDR+M+   + YP Y F +++GY T KH   +   G   IHRL+F P+
Sbjct: 191 SIAAASIIAKVTRDRMMQQYDELYPGYDFANNMGYGTKKHLNGLDTIGICPIHRLSFSPV 250

Query: 205 RNLSV 209
           +   +
Sbjct: 251 KEAKI 255


>gi|86132077|ref|ZP_01050673.1| Ribonuclease HII [Dokdonia donghaensis MED134]
 gi|85817411|gb|EAQ38591.1| Ribonuclease HII [Dokdonia donghaensis MED134]
          Length = 212

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/185 (38%), Positives = 101/185 (54%), Gaps = 8/185 (4%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSA 86
           G DE GRG LAGPV  AA++L  + I   + DSK+++ KKR+ L   I   AI  S S  
Sbjct: 14  GTDEAGRGCLAGPVTAAAVMLPDSFINEILTDSKQLTEKKRDLLKPIIEQQAIAYSFSHV 73

Query: 87  SHQYIDKHNIHKATLDAIYHAVENL-------QVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             + ID  NI  A++ A++ ++E +       Q  P+  L+DG             VIKG
Sbjct: 74  MMEEIDDINILNASITAMHRSIEGMISTLSRKQKKPQHILVDGNRFKPFTGLDHTTVIKG 133

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D   L IAAASIIAK  RD  M   H++YP Y +  + GYPT +H++ I+  G +  HR 
Sbjct: 134 DGKYLPIAAASIIAKTERDLFMDRIHEEYPMYNWKKNKGYPTKEHREAIRTYGITKYHRK 193

Query: 200 TFRPL 204
           +F+ L
Sbjct: 194 SFKLL 198


>gi|237785759|ref|YP_002906464.1| Ribonuclease HII [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758671|gb|ACR17921.1| Ribonuclease HII [Corynebacterium kroppenstedtii DSM 44385]
          Length = 261

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/203 (38%), Positives = 112/203 (55%), Gaps = 12/203 (5%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFG-INDSKKI 63
           +P+   +E +A+V+   + PVAG+DE GRGA  GP+ +AA IL    I P   + DSKK+
Sbjct: 50  MPQARTYE-DALVKA-GLGPVAGVDEAGRGACCGPMAIAACILPAKPIHPLDKLTDSKKL 107

Query: 64  SHKKREELYEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           S   RE+L+  I  SA    +I I +A    IDK+ +    +  +  AV  L   P   L
Sbjct: 108 SPTMREKLFPIIKDSAESWSVILIPAAD---IDKYGVQAMNIAGMRRAVGVLDQRPHYVL 164

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
            D   + + L      +I GDS +  IAAAS++AKVTRDR M    ++YP YG + H GY
Sbjct: 165 TDAMRV-DGLTQPHLPIIGGDSAARCIAAASVLAKVTRDRYMCDLAERYPGYGLEKHKGY 223

Query: 180 PTAKHQQVIKEKGPSCIHRLTFR 202
            TA+H   ++  G +  HR T+R
Sbjct: 224 GTAQHIDAVRLHGGTPEHRYTYR 246


>gi|229496858|ref|ZP_04390566.1| ribonuclease HII [Porphyromonas endodontalis ATCC 35406]
 gi|229316176|gb|EEN82101.1| ribonuclease HII [Porphyromonas endodontalis ATCC 35406]
          Length = 198

 Score =  114 bits (286), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/176 (41%), Positives = 103/176 (58%), Gaps = 1/176 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
            G DE GRG+L G V  AA+IL  +     +NDSKK++ + R  L  +I   A+  ++  
Sbjct: 14  CGCDEAGRGSLVGDVFAAAVILPEDFCLPELNDSKKLTERTRYRLRPQIEEQAVAWAVGR 73

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           AS + ID +NI  A+  A++ A+  L + P+  LIDG      L      ++KGDS   S
Sbjct: 74  ASAEEIDTYNILHASFLAMHRAIAALGITPQRLLIDGNHFDPYLDIPHECIVKGDSRLAS 133

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           IAAASI+AK  RD  M  AHK++P YG+D + GYPT  H+Q I++ G S + R TF
Sbjct: 134 IAAASILAKTYRDDYMLAAHKRFPVYGWDRNKGYPTPAHRQAIEKMGHSPLQRFTF 189


>gi|163846616|ref|YP_001634660.1| ribonuclease HII [Chloroflexus aurantiacus J-10-fl]
 gi|222524413|ref|YP_002568884.1| ribonuclease HII [Chloroflexus sp. Y-400-fl]
 gi|189043577|sp|A9WIH1|RNH2_CHLAA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807970|sp|B9LAL2|RNH2_CHLSY RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|163667905|gb|ABY34271.1| Ribonuclease H [Chloroflexus aurantiacus J-10-fl]
 gi|222448292|gb|ACM52558.1| Ribonuclease H [Chloroflexus sp. Y-400-fl]
          Length = 212

 Score =  114 bits (286), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/202 (41%), Positives = 118/202 (58%), Gaps = 9/202 (4%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN-----NIPFGINDSKKIS 64
           P   +E  ++ +    +AGIDE GRG  AGPVV AA++L P      ++  G+NDSK+++
Sbjct: 3   PDLSIEHDLQRRGYANLAGIDEAGRGCWAGPVVAAAVVLSPAVYRQPDLLAGVNDSKQLT 62

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
              RE +Y  I + A+ + +       ID + I  AT  A+  A+  L     + +ID  
Sbjct: 63  AGARERIYTSIQTHALGVGVGIVPAFLIDAYGILPATRLAMIQALLALPCAVDALIIDAV 122

Query: 124 SIPE-DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
            +P   LP    A+++GD  SLSIAAASIIAKVTRDRLM  A   +P YGF  H GY TA
Sbjct: 123 QLPGISLP--QTALVRGDERSLSIAAASIIAKVTRDRLMATADHCFPHYGFALHKGYGTA 180

Query: 183 KHQQVIKEKGPSCIHRLTFRPL 204
            H++ + + GPS +HR TF+P+
Sbjct: 181 VHRRALAQYGPSPLHRRTFQPV 202


>gi|323343781|ref|ZP_08084008.1| ribonuclease HII [Prevotella oralis ATCC 33269]
 gi|323095600|gb|EFZ38174.1| ribonuclease HII [Prevotella oralis ATCC 33269]
          Length = 212

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/183 (40%), Positives = 108/183 (59%), Gaps = 5/183 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK++S K R EL  +I   A   ++  
Sbjct: 23  AGCDEAGRGCLAGSVYAAAVILPKDYDNPLLNDSKQLSVKLRYELRSQIERDATAWAVGI 82

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIP-EDLPCQAFAVIKGDSIS 143
            + + ID+ NI KA+  A++ A++ L V P++ ++DG   IP +DLP  A  ++KGD   
Sbjct: 83  VTPEEIDRINILKASFLAMHRALDQLAVRPQAVIVDGNLFIPYQDLPYTA--IVKGDGKY 140

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AK  RD  M     +YP Y +  + GYPT+KH+  I+  G +  HR ++  
Sbjct: 141 QAIAAASILAKTYRDDYMEELALEYPQYDWQHNKGYPTSKHRAAIRLHGITPYHRKSYNL 200

Query: 204 LRN 206
           L N
Sbjct: 201 LGN 203


>gi|330752803|emb|CBL88322.1| ribonuclease HII [uncultured Dokdonia sp.]
          Length = 212

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 72/185 (38%), Positives = 101/185 (54%), Gaps = 8/185 (4%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSA 86
           G DE GRG LAGPV  AA++L  + I   + DSK+++ KKR+ L   I   AI  S S  
Sbjct: 14  GTDEAGRGCLAGPVTAAAVMLPDSFINEILTDSKQLTEKKRDLLKPIIEQQAIAYSFSHV 73

Query: 87  SHQYIDKHNIHKATLDAIYHAVENL-------QVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             + ID  NI  A++ A++ ++E +       Q  P+  L+DG             VIKG
Sbjct: 74  MMEEIDDINILNASITAMHRSIEGMIGTLSRKQKKPQHILVDGNRFKPFTGIDHTTVIKG 133

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D   L IAAASIIAK  RD  M   H++YP Y +  + GYPT +H++ I+  G +  HR 
Sbjct: 134 DGKYLPIAAASIIAKTERDLFMDRIHEEYPMYNWKKNKGYPTKEHREAIRTYGITKYHRK 193

Query: 200 TFRPL 204
           +F+ L
Sbjct: 194 SFKLL 198


>gi|227824335|ref|ZP_03989167.1| ribonuclease HII [Acidaminococcus sp. D21]
 gi|226904834|gb|EEH90752.1| ribonuclease HII [Acidaminococcus sp. D21]
          Length = 270

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/202 (40%), Positives = 119/202 (58%), Gaps = 10/202 (4%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREE 70
            E E +  E+    VAG DE GRG LAGP+V AA+IL P+ I   G+NDSKK+  K+RE 
Sbjct: 56  MEPERIFWEQGFVHVAGTDEAGRGPLAGPLVTAAVIL-PHEIDLPGLNDSKKVPPKRREA 114

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY++I   A+ +++     Q ID  NI++A   ++   + +L   P +AL D  ++P  L
Sbjct: 115 LYDEILQQALAVTVRILGPQEIDTLNIYQAAKQSMQMCLTHLSAAPDAALTD--AMPLSL 172

Query: 130 ---PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
              P +    + GD+ S +IAAASIIAKVTRDR+M    + YP YGF S+ GY +  H  
Sbjct: 173 VGIPVKDL--VHGDARSAAIAAASIIAKVTRDRIMVELDQTYPGYGFSSNKGYGSKAHLD 230

Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208
            +   G +  HR T+ P++ L+
Sbjct: 231 ALAALGVTPWHRRTYEPIKGLA 252


>gi|123966915|ref|YP_001011996.1| ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9515]
 gi|166226637|sp|A2BYM8|RNH2_PROM5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|123201281|gb|ABM72889.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9515]
          Length = 209

 Score =  114 bits (285), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/185 (40%), Positives = 102/185 (55%), Gaps = 5/185 (2%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS-SAIIS 82
           GIDEVGRGA+ GPV  AA++L   N       G+ DSKK++ KKR+ L  KI S S+  S
Sbjct: 24  GIDEVGRGAVFGPVFSAAVVLTEKNGYTLKQLGVTDSKKLTEKKRKLLLPKIISLSSDYS 83

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  +S + ID+  I  AT  ++  A++ L+  P   +IDG             +I GDS 
Sbjct: 84  LGQSSAREIDQLGIRYATELSMIRAIKKLKSKPYEVIIDGPLSLRLWKSHQRNIIAGDSK 143

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             SIAAASI+AKVTRD LM    KK+  Y    + GY T +H   +K  G + +HR +F 
Sbjct: 144 FTSIAAASIVAKVTRDFLMERLEKKFSGYFIFKNKGYGTKEHLLSLKANGVTNLHRKSFL 203

Query: 203 PLRNL 207
              NL
Sbjct: 204 TKLNL 208


>gi|320536890|ref|ZP_08036883.1| ribonuclease HII [Treponema phagedenis F0421]
 gi|320146273|gb|EFW37896.1| ribonuclease HII [Treponema phagedenis F0421]
          Length = 199

 Score =  114 bits (285), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/193 (42%), Positives = 105/193 (54%), Gaps = 13/193 (6%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81
           M  + GIDE GRG LAGPV  AA+IL P+     +NDSKK+S +KRE     I + A+ I
Sbjct: 1   MTLICGIDEAGRGPLAGPVTAAAVILPPDFASTLLNDSKKLSPQKREACRALIQAQALFI 60

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENL--QVIP---RSA----LIDGRSIPEDLPCQ 132
               A H  ID  NI +ATL A+  A ++L  +V+    R+A    ++DG  +P+ L   
Sbjct: 61  GEGRADHIEIDAINILQATLLAMKRAFDDLYQKVLTSECRAASIRIIVDGNKLPDFLNPS 120

Query: 133 AFAVIKGDSISL---SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             A             + AASIIAK TRD  M    KKYP YG++ H GY TA H Q IK
Sbjct: 121 IIAAAAEPKADAKYPEVMAASIIAKTTRDMEMLEWAKKYPQYGYEKHKGYCTAAHVQAIK 180

Query: 190 EKGPSCIHRLTFR 202
             G S I R TF+
Sbjct: 181 NFGFSPIQRKTFK 193


>gi|313901245|ref|ZP_07834733.1| ribonuclease HII [Clostridium sp. HGF2]
 gi|312954203|gb|EFR35883.1| ribonuclease HII [Clostridium sp. HGF2]
          Length = 207

 Score =  114 bits (285), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/194 (36%), Positives = 110/194 (56%), Gaps = 4/194 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E +  ++    + GIDE GRG +AGP+VVAA+   P      I DSKK+S KKR  L+
Sbjct: 6   EYEQVWWQQGKRCIVGIDEAGRGPIAGPLVVAAVAFPPGYSHPEIYDSKKLSDKKRRALF 65

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            ++ + A+   I     + ID+ NI++AT  A+   + ++       L D   +P +   
Sbjct: 66  HEVVAQALEYHIRIIEPKIIDELNIYRATQRAM-QDISDMFAHADGVLTDAMPLPHN-ER 123

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              +++KGD  S+SIAAASI+AKVTRD +M    ++YP YGF  H GYPT  H + +   
Sbjct: 124 DVISLVKGDQKSVSIAAASILAKVTRDCMMEAYDRQYPQYGFARHKGYPTKAHIEALHTY 183

Query: 192 GP-SCIHRLTFRPL 204
           G  + ++R ++ P+
Sbjct: 184 GVITGLYRESYGPV 197


>gi|283852127|ref|ZP_06369401.1| Ribonuclease H [Desulfovibrio sp. FW1012B]
 gi|283572517|gb|EFC20503.1| Ribonuclease H [Desulfovibrio sp. FW1012B]
          Length = 211

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/187 (42%), Positives = 111/187 (59%), Gaps = 12/187 (6%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83
           V GIDE GRG LAGPVV AA++L +   +P G+ DSKK+S  KR+ L   I   A+   +
Sbjct: 12  VVGIDEAGRGCLAGPVVAAAVVLPEACQLP-GLTDSKKLSATKRDRLAPAIKVQAVAWGL 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIP-------EDLPCQAFA 135
             A    +D+ NI +AT  A+  AV  ++  P    IDG + IP       ++ P Q  A
Sbjct: 71  GVAWPAEVDRINILQATFAAMARAVRAMRAAPTVLRIDGDKRIPAAYLNFLDEAPVQE-A 129

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           +I GD    +I+AASI+AK +RDR+M +  +++P YGF+ H GY  A H   +++ GP  
Sbjct: 130 IIGGDLTVPAISAASILAKTSRDRMMTVFARQFPGYGFEGHKGYGVAAHLAALRQLGPCR 189

Query: 196 IHRLTFR 202
           IHRLTFR
Sbjct: 190 IHRLTFR 196


>gi|160915179|ref|ZP_02077392.1| hypothetical protein EUBDOL_01187 [Eubacterium dolichum DSM 3991]
 gi|158432978|gb|EDP11267.1| hypothetical protein EUBDOL_01187 [Eubacterium dolichum DSM 3991]
          Length = 208

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/202 (37%), Positives = 112/202 (55%), Gaps = 14/202 (6%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E    ++    + GIDE GRG +AGP+VVAA+    +     I DSKK+S KKRE L+
Sbjct: 6   EYEKAWYKEGKQAIVGIDEAGRGPIAGPLVVAAVSFPDDYDDDEIYDSKKLSEKKRELLF 65

Query: 73  EKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            KI   A    I+ + + +   ID  NI++AT +A+    +  Q+I    L D   +P  
Sbjct: 66  RKIIKEAREYHILIVDTKT---IDTENIYRATQNAMQRLCDEFQMID-GVLTDAMPLP-- 119

Query: 129 LPCQ--AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             C+    +++KGD  S+SIAAASI+AKVTRD +M     +YP YGF  H GYPT  H +
Sbjct: 120 -FCKQDCISLVKGDQKSVSIAAASILAKVTRDHIMMAYDLQYPQYGFAKHKGYPTKVHLE 178

Query: 187 VIKEKGP-SCIHRLTFRPLRNL 207
            +   G    ++R ++ P+  +
Sbjct: 179 ALHRYGVIDGLYRHSYGPVAKM 200


>gi|187933770|ref|YP_001885450.1| ribonuclease HII [Clostridium botulinum B str. Eklund 17B]
 gi|187721923|gb|ACD23144.1| ribonuclease HII [Clostridium botulinum B str. Eklund 17B]
          Length = 271

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 116/203 (57%), Gaps = 16/203 (7%)

Query: 14  LEAMVREKNMWP----------VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGIND 59
           ++ M R K+M+           +AG+DEVGRG LAGP+V  A+ILD N I       +ND
Sbjct: 65  IKEMSRVKSMYEFDKSFGEFKYIAGVDEVGRGPLAGPIVACAVILDLNVIDEELILYLND 124

Query: 60  SKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118
           SKK++H KREEL   I   A+   IS +S++ ID+  I  +  +    +  NL V P   
Sbjct: 125 SKKLNHTKREELSAIIKEKALAYYISLSSNKEIDERGIAFSNNNVFLDSCNNLSVRPDLV 184

Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
           L DG  +        F +IKGD+ S SIAAASI+AKV RD LM+    KYP Y F++++G
Sbjct: 185 LSDGYLVKNIEITNKF-IIKGDTKSASIAAASILAKVYRDNLMKEYSIKYPHYDFENNMG 243

Query: 179 YPTAKHQQVIKEKGPSCIHRLTF 201
           Y T KH   +K+ G   IHR +F
Sbjct: 244 YGTPKHIDGLKKYGKCEIHRNSF 266


>gi|146299683|ref|YP_001194274.1| ribonuclease HII [Flavobacterium johnsoniae UW101]
 gi|189043596|sp|A5FIL7|RNH2_FLAJO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|146154101|gb|ABQ04955.1| Ribonuclease H [Flavobacterium johnsoniae UW101]
          Length = 221

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/204 (37%), Positives = 109/204 (53%), Gaps = 31/204 (15%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
            G DE GRG LAGPV  AA+IL     NNI   +NDSK++S K R  L   I   A+  S
Sbjct: 13  TGTDEAGRGCLAGPVTAAAVILPSVFENNI---LNDSKQLSEKARALLKPIIEEQALCFS 69

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDL------------ 129
           ++      ID+ NI  A++  +   +  L+ IP   ++DG RS+   L            
Sbjct: 70  VTHLFPDEIDEINILNASMKGMQECILKLKHIPEYIIVDGNRSLNAKLGLKNTFGKQFSK 129

Query: 130 ---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
                    P Q+  +IKGD+  LSIAAASI+AK  RD  M   H+++P Y +  + GYP
Sbjct: 130 EEIELLKSIPNQS--IIKGDAKFLSIAAASILAKTYRDEYMDQIHEEFPMYNWKQNKGYP 187

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPL 204
           T +H++ IK+ G +  HR++FR L
Sbjct: 188 TKEHREAIKKYGTTKYHRMSFRLL 211


>gi|326387694|ref|ZP_08209300.1| ribonuclease H [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207740|gb|EGD58551.1| ribonuclease H [Novosphingobium nitrogenifigens DSM 19370]
          Length = 198

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/187 (39%), Positives = 104/187 (55%), Gaps = 9/187 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           V G+DE GRG LAGPVV AA+IL     P G+ DSKK++ ++R  L   I  +    +  
Sbjct: 7   VVGVDEAGRGPLAGPVVAAAVILGAG-APQGLADSKKLTARRRAWLEVGIKETCRWGLGV 65

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENL----QVIPRSALIDGRSIPED----LPCQAFAVI 137
                ID+ NI  AT+ A+  AV +L      +    LIDG   P          A A++
Sbjct: 66  VEADEIDRINIFAATMKAMTLAVADLLDRDGGVVEMVLIDGNKTPAGRDPGWVWPARAIV 125

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
            GD+   +I+AASI+AK  RDR+MR A +K+P YG++ + GY T +H   ++E GP   H
Sbjct: 126 GGDATEAAISAASILAKEHRDRIMRDAAQKWPQYGWERNAGYGTPEHLAALREHGPCVFH 185

Query: 198 RLTFRPL 204
           R +F P+
Sbjct: 186 RRSFAPV 192


>gi|256379913|ref|YP_003103573.1| ribonuclease H [Actinosynnema mirum DSM 43827]
 gi|255924216|gb|ACU39727.1| Ribonuclease H [Actinosynnema mirum DSM 43827]
          Length = 258

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/193 (36%), Positives = 109/193 (56%), Gaps = 4/193 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKRE 69
           +  +A +  + + PVAG+DE GRGA AGP+VVAA +L   +     G+ DSK ++   R+
Sbjct: 17  WAFQAALDRRGLGPVAGVDEAGRGACAGPLVVAAAVLRTGDAARFAGLTDSKLLTAAARD 76

Query: 70  ELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            +++ +   A+  ++       +D   +H A ++ +  AV  L   P   L DG  +P  
Sbjct: 77  RMHDLVLERALDHAVVVVPADEVDAIGVHVANVEGMRRAVARLGTHPGYVLTDGFPVP-G 135

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L      ++KGD ++  +AAAS++AKVTRDR+M   H++ P YGFD H GY TA H   +
Sbjct: 136 LTAPNAPLVKGDRVAACVAAASVLAKVTRDRIMAELHEELPVYGFDVHKGYGTAAHTAAL 195

Query: 189 KEKGPSCIHRLTF 201
            E GPS  HR ++
Sbjct: 196 LEHGPSGQHRWSY 208


>gi|301167133|emb|CBW26712.1| ribonuclease HII [Bacteriovorax marinus SJ]
          Length = 227

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/212 (39%), Positives = 113/212 (53%), Gaps = 31/212 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN-----NIPF----GINDSKKISHKKRE------- 69
           +AG DEVGRG LAGPVV   +++D +     N+ F    GI DSKKIS  KR+       
Sbjct: 13  LAGCDEVGRGPLAGPVVGCCVLVDRDSLTVENVDFLLSHGITDSKKISATKRKKILKSLG 72

Query: 70  -ELYEKITSSAI---------ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
            E YE  + +++          S+   S++ ID+ NI +A+L A+  A  +     R+ L
Sbjct: 73  IEKYELASKNSLTLNKNLKISFSVREISNESIDQLNILRASLKAMGDAFIDCFSGERTKL 132

Query: 120 -IDGRSIPEDLPCQAFA---VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
            IDG     DL  +  +   VIKGDS S  I  ASIIAK  RD LM    KKYP YG + 
Sbjct: 133 LIDGNKYI-DLGLENVSEEFVIKGDSKSALIGLASIIAKEYRDNLMIEMGKKYPGYGLEK 191

Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           H GYPT  H+  I + G + IHR +F+ ++  
Sbjct: 192 HAGYPTKFHKDAISKLGVTPIHRKSFKGVKEF 223


>gi|251780020|ref|ZP_04822940.1| ribonuclease HII [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243084335|gb|EES50225.1| ribonuclease HII [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 271

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/181 (45%), Positives = 108/181 (59%), Gaps = 6/181 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI- 80
           VAG+DEVGRG LAGP+V  ++ILD N I       +NDSKK++H KREEL   I   A+ 
Sbjct: 87  VAGVDEVGRGPLAGPIVACSVILDLNVIDEELILYLNDSKKLNHIKREELAIIIKEKALA 146

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            SIS +S++ ID+  I     +    +  NL + P   L DG  +        F VIKGD
Sbjct: 147 YSISLSSNKEIDERGIAYCNNNVFLDSCNNLSIKPELVLSDGYLVKNIDIANKF-VIKGD 205

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           + S SIAAASI+AKV RD LM+    KYP Y F++++GY T KH   +K+ G   IHR +
Sbjct: 206 TKSASIAAASILAKVYRDNLMKEYSIKYPHYDFENNMGYGTQKHIDGLKKYGKCEIHRNS 265

Query: 201 F 201
           F
Sbjct: 266 F 266


>gi|188588936|ref|YP_001920597.1| ribonuclease HII [Clostridium botulinum E3 str. Alaska E43]
 gi|188499217|gb|ACD52353.1| ribonuclease HII [Clostridium botulinum E3 str. Alaska E43]
          Length = 271

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/181 (45%), Positives = 108/181 (59%), Gaps = 6/181 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI- 80
           VAG+DEVGRG LAGP+V  ++ILD N I       +NDSKK++H KREEL   I   A+ 
Sbjct: 87  VAGVDEVGRGPLAGPIVACSVILDLNVIDEELILYLNDSKKLNHIKREELAIIIKEKALA 146

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            SIS +S++ ID+  I     +    +  NL + P   L DG  +        F VIKGD
Sbjct: 147 YSISLSSNKEIDERGIAYCNNNVFLDSCNNLSIKPELVLSDGYLVKNIDIANKF-VIKGD 205

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           + S SIAAASI+AKV RD LM+    KYP Y F++++GY T KH   +K+ G   IHR +
Sbjct: 206 TKSASIAAASILAKVYRDNLMKEYSIKYPHYDFENNMGYGTQKHIDGLKKYGKCEIHRNS 265

Query: 201 F 201
           F
Sbjct: 266 F 266


>gi|51892612|ref|YP_075303.1| ribonuclease HII [Symbiobacterium thermophilum IAM 14863]
 gi|81388972|sp|Q67PD4|RNH21_SYMTH RecName: Full=Ribonuclease HII 1; Short=RNase HII 1
 gi|51856301|dbj|BAD40459.1| ribonuclease HII [Symbiobacterium thermophilum IAM 14863]
          Length = 259

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/186 (41%), Positives = 110/186 (59%), Gaps = 9/186 (4%)

Query: 20  EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYE 73
           E+ +W      +AGIDEVGRG LAGPVV AA+IL P  +   GI ++K++S ++R ELY 
Sbjct: 59  ERQLWSMGYRHIAGIDEVGRGPLAGPVVAAAVIL-PGEVELPGIEEAKRLSDRRRMELYR 117

Query: 74  KITSSAIISISSASH-QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   A+         + ID+ ++  AT  A+  AV +L V P   LIDG  +P ++   
Sbjct: 118 RIREVAVAVGVGLVQPEGIDEASVVVATYKAMMKAVADLPVTPDYLLIDGVHLP-NVSQP 176

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              V+ G+++S SIAAA+++AKV RD  M     KYP YGF  H GY T +H+  ++  G
Sbjct: 177 QVPVVGGETLSCSIAAAAVVAKVVRDEYMVEMDAKYPAYGFAHHKGYGTPEHRLALERYG 236

Query: 193 PSCIHR 198
           P  IHR
Sbjct: 237 PCPIHR 242


>gi|149185908|ref|ZP_01864223.1| Ribonuclease H [Erythrobacter sp. SD-21]
 gi|148830469|gb|EDL48905.1| Ribonuclease H [Erythrobacter sp. SD-21]
          Length = 211

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/187 (38%), Positives = 107/187 (57%), Gaps = 9/187 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           + G+DE GRG LAGPVV AA++L     P G++DSKK+S  KR +L  +I       ++ 
Sbjct: 16  IVGVDEAGRGPLAGPVVAAAVVLC-KPCPGGLDDSKKLSAAKRSKLEPQIQRRCAWGLAV 74

Query: 86  ASHQYIDKHNIHKATLDAIYHA----VENLQVIPRSALIDGRSIP----EDLPCQAFAVI 137
              + ID+ NI  AT+ A+  A    +E L   P   LIDG   P    E+    A A++
Sbjct: 75  VEPEVIDRLNIFGATMLAMTLATQRCIEALGAEPAEVLIDGNMTPHGRREEWRWPARAIV 134

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
            GD     I+AASI+AK  RDR+M  A K +P YG++++ GY +  H + ++  GP+ +H
Sbjct: 135 GGDGKEACISAASILAKEYRDRIMVEAAKAHPHYGWENNKGYGSKSHMEALRLHGPTPLH 194

Query: 198 RLTFRPL 204
           R +F P+
Sbjct: 195 RRSFAPV 201


>gi|256819586|ref|YP_003140865.1| ribonuclease HII [Capnocytophaga ochracea DSM 7271]
 gi|256581169|gb|ACU92304.1| Ribonuclease H [Capnocytophaga ochracea DSM 7271]
          Length = 198

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 9/189 (4%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL P+     + DSK+++ K+R  L   I S A+  ++  
Sbjct: 12  AGTDEAGRGCLAGPVTAAAVILPPDFKNDLLTDSKQLTEKQRNLLRPIIESEAVAYAVCH 71

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF---AVIKGDSI 142
                ID+ NI +A++ A++ A+  L   P    +DG      +P Q      V+KGD  
Sbjct: 72  VLPAEIDELNILRASITAMHRAIAQLSPTPEFIAVDGNKF---VPYQKIPYACVVKGDGK 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +IAAASI+AK  RD  M    +++P+Y +  + GYPT +H++ I E G +  HR TF+
Sbjct: 129 IQTIAAASILAKTYRDAYMEDLAQQFPEYHWQQNKGYPTPEHRKAIAEYGATEHHRKTFQ 188

Query: 203 --PLRNLSV 209
             P+  LS+
Sbjct: 189 LLPVEQLSL 197


>gi|281424964|ref|ZP_06255877.1| ribonuclease HII [Prevotella oris F0302]
 gi|281400808|gb|EFB31639.1| ribonuclease HII [Prevotella oris F0302]
          Length = 223

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/186 (38%), Positives = 105/186 (56%), Gaps = 11/186 (5%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL P+     +NDSKK+S ++R  L E+I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPPDYDNPALNDSKKLSVRQRYALREQIEHDALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS-----IPEDLPCQA-----FA 135
           A+ + ID+ NI  A+  A++ A++ L++ P + ++DG       + + LP          
Sbjct: 73  ATPEEIDEINILHASFLAMHRALDQLKIRPEAVIVDGNHFDPYVVGKGLPNAGKQLPHTC 132

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           VIKGD    +IAAASI+AK  RD  M    K YP Y ++ + GYPT KH   I E G   
Sbjct: 133 VIKGDGKYQNIAAASILAKTYRDDYMTEQAKLYPFYDWEKNKGYPTKKHYAGIAEHGICE 192

Query: 196 IHRLTF 201
           +HR ++
Sbjct: 193 LHRRSY 198


>gi|302522312|ref|ZP_07274654.1| ribonuclease HII [Streptomyces sp. SPB78]
 gi|302431207|gb|EFL03023.1| ribonuclease HII [Streptomyces sp. SPB78]
          Length = 233

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 102/180 (56%), Gaps = 7/180 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE----ELYEKITSSAII 81
           VAGIDEVGRGA AGPV V A +      P G+ DSK ++ K+R     EL + +T+    
Sbjct: 23  VAGIDEVGRGAWAGPVSVCAAVTGLRRPPEGLTDSKLLTPKRRAALVVELEQWVTAH--- 79

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           S+  AS + ID+  +  A   A   A++ L V P   ++DG       P     VIKGD 
Sbjct: 80  SLGHASPEEIDELGMTAALRLAAGRALDGLPVRPDWVILDGNHDYLGAPWNVRTVIKGDQ 139

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             +S+AAAS++AKV RDRLM     ++ D+ F ++ GY +  H+  + E+GP+  HRL++
Sbjct: 140 SCVSVAAASVLAKVARDRLMAELGAQHEDFAFAANAGYHSPAHKTALAERGPTPYHRLSW 199


>gi|152989967|ref|YP_001355689.1| ribonuclease HII [Nitratiruptor sp. SB155-2]
 gi|151421828|dbj|BAF69332.1| ribonuclease HII [Nitratiruptor sp. SB155-2]
          Length = 182

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 101/180 (56%), Gaps = 10/180 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           + GIDE GRG LAGP+V+A ++       + ++DSKK+S + RE+LYEKI ++   +I  
Sbjct: 3   ICGIDEAGRGPLAGPLVMAGVVFTQR--VYKLDDSKKLSPQAREKLYEKIINATQYTIVI 60

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI--PEDLPCQAFAVIKGDSIS 143
             +  ID+  I       +   +  L    +  + DG S    E++      VIK D   
Sbjct: 61  IDNDTIDQIGISACISQGLKEIISALHA--KRYIFDGNSKFGVENIE----PVIKADQTI 114

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             + AASI+AKVTRDR+M    K+YP+YGF  H GY T +H + I+  G S IHR +FRP
Sbjct: 115 KEVMAASILAKVTRDRIMCEMDKEYPEYGFCKHKGYGTKEHIEAIQRYGFSPIHRKSFRP 174


>gi|318042659|ref|ZP_07974615.1| ribonuclease HII [Synechococcus sp. CB0101]
          Length = 200

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/185 (38%), Positives = 102/185 (55%), Gaps = 12/185 (6%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSSA-I 80
           +AG+DEVGRG   GPV   A+IL           G+ DSKK++ ++R +L   I   A  
Sbjct: 12  IAGVDEVGRGCWFGPVFAGAVILPASARSALAAAGLTDSKKLTARRRAQLVPLIQQHAES 71

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-ALIDGRSIPEDL---PCQAFAV 136
            ++  AS + ID+  I  AT  A+  A++ L   P    L+DG  +P  L   P Q   V
Sbjct: 72  WALGQASAREIDQVGIRAATERAMLRALQRLSAPPPGLVLVDG-VLPLRLWEGPQQT--V 128

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           ++GDS  L IAAAS++AK  RD L+     +YP YG + H GY TA H+  + E GP+ +
Sbjct: 129 VRGDSEHLEIAAASVLAKQARDALITRLAARYPAYGLERHAGYGTALHRAAVLEAGPTPL 188

Query: 197 HRLTF 201
           HR +F
Sbjct: 189 HRRSF 193


>gi|33862058|ref|NP_893619.1| ribonuclease HII and HIII [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|39932293|sp|Q7UZZ2|RNH2_PROMP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|33634276|emb|CAE19961.1| Ribonuclease HII and HIII [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 209

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/185 (38%), Positives = 103/185 (55%), Gaps = 5/185 (2%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS-SAIIS 82
           GIDEVGRG++ GPV   A++L   +       G+NDSKK++ KKR++ + KI + S+  +
Sbjct: 24  GIDEVGRGSVFGPVFSVAVVLSKKSGLTLKKLGVNDSKKLTPKKRKDFFPKIIALSSDYA 83

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  +S + ID   I  AT  ++  AV+ L+ +P   LIDG             +I GDS 
Sbjct: 84  LGQSSVREIDLLGIRHATELSMIRAVKKLKHMPSELLIDGPLTLRLWEGNQRNIISGDSK 143

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            +SIA ASIIAKV RD LM     KYP Y    + GY T +H   +K+ G + +HR +F 
Sbjct: 144 FISIATASIIAKVMRDSLMERLESKYPGYFIFKNKGYGTKQHFSSLKKHGLTNLHRKSFL 203

Query: 203 PLRNL 207
              NL
Sbjct: 204 NKLNL 208


>gi|311898762|dbj|BAJ31170.1| putative ribonuclease HII [Kitasatospora setae KM-6054]
          Length = 227

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/186 (37%), Positives = 105/186 (56%), Gaps = 7/186 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY----EKITSSAII 81
           VAG+DEVGRGA AGPV+V A +      P G+ DSK ++ ++R  L     E +T+ AI 
Sbjct: 22  VAGLDEVGRGAWAGPVMVGAAVTGLRRPPEGLTDSKLLTERRRAALAPVLEEWVTAYAI- 80

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
              SAS    D+  +  A   A   A+E L V P + ++DG+      P +   VIKGD 
Sbjct: 81  --GSASALECDELGMTAALRLAAVRALEELPVRPDAVILDGKHDYLGGPWRVRTVIKGDQ 138

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             + ++AAS++AKV RD LM      +P++ F  + GYP+  H+  ++E GP+  HRL++
Sbjct: 139 SCVCVSAASVLAKVRRDALMAELGSGHPEFAFAENAGYPSPTHRAALEEHGPTEHHRLSW 198

Query: 202 RPLRNL 207
             L +L
Sbjct: 199 AYLDDL 204


>gi|302338381|ref|YP_003803587.1| ribonuclease H [Spirochaeta smaragdinae DSM 11293]
 gi|301635566|gb|ADK80993.1| Ribonuclease H [Spirochaeta smaragdinae DSM 11293]
          Length = 190

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/180 (40%), Positives = 102/180 (56%), Gaps = 6/180 (3%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGI-NDSKKISHKKREELYEKITSSAIISISSA 86
           GIDE GRG LAGPV  AA+IL P   P G+ +DSKK+S  KR    ++I SS    +   
Sbjct: 8   GIDEAGRGPLAGPVTAAAVIL-PAAFPVGLLDDSKKLSPAKRNIALKEILSSCSYGVGWV 66

Query: 87  SHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL----IDGRSIPEDLPCQAFAVIKGDSI 142
             + ID+ NIH A+L A+  A E +    R+ +    +DG+  P+    +  A+I+GD  
Sbjct: 67  WPEEIDRINIHNASLLAMKRAFEAIDQKARTLVQIVQVDGKFPPKLDHPRIEAIIRGDQT 126

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I AASI+AK  RDR M       P + F+ H GYPT  H+++ ++ G S IHR +FR
Sbjct: 127 HPHIQAASILAKEARDRWMIRYSWIEPAWHFERHKGYPTKLHRELCRQYGLSEIHRKSFR 186


>gi|305680699|ref|ZP_07403506.1| ribonuclease HII [Corynebacterium matruchotii ATCC 14266]
 gi|305658904|gb|EFM48404.1| ribonuclease HII [Corynebacterium matruchotii ATCC 14266]
          Length = 236

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 99/194 (51%), Gaps = 4/194 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKR 68
           H   E  + +  + PVAG+DE GRGA AGP+ +AA IL P  +     + DSKK+S   R
Sbjct: 7   HRTFEVALHQAGLGPVAGVDEAGRGACAGPITIAACILPPQPLAALSRLTDSKKLSAATR 66

Query: 69  EELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
             L+  I   A+  SI   S   ID++ I  A +  +   V  L V P   L D   + +
Sbjct: 67  AALFPLIQHHAVAWSILHISAADIDQYGIQHANVFGMRRVVALLDVQPGYVLTDALKV-D 125

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
              C    +I GD+ +  I+AAS++AK  RD +M    + YP Y F SH GY T  H   
Sbjct: 126 GFACSYLPIIGGDAAARCISAASVLAKHARDLVMAELAETYPRYEFASHKGYGTKVHMTA 185

Query: 188 IKEKGPSCIHRLTF 201
           ++  G S +HR ++
Sbjct: 186 VRRYGASPVHRYSY 199


>gi|145593863|ref|YP_001158160.1| ribonuclease HII [Salinispora tropica CNB-440]
 gi|189043656|sp|A4X4I2|RNH2_SALTO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|145303200|gb|ABP53782.1| RNase HII [Salinispora tropica CNB-440]
          Length = 270

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/196 (37%), Positives = 110/196 (56%), Gaps = 10/196 (5%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKRE 69
           + LE  ++ +    VAG DE GRGA AGP+V AA IL P       G+ DSK ++   RE
Sbjct: 16  YALERALQRRGFRQVAGADEAGRGACAGPLVAAAAILPPGRRGEVDGLADSKLLTPASRE 75

Query: 70  ELYEKI----TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
            +Y ++    ++ A++ I +A    +D   +H   L A+  A+ +L   P   L DG  +
Sbjct: 76  RVYAEVIARASAYAVVVIPAAE---VDLRGLHVCNLAAMRRALASLATPPEYVLTDGFGV 132

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
            + L     AV KGD ++  +AAAS++AKVTRDR+M     ++P YGF  H GY TA+H 
Sbjct: 133 -DGLDVPGLAVWKGDRVAACVAAASVLAKVTRDRIMVELDLEFPGYGFAEHKGYITAEHS 191

Query: 186 QVIKEKGPSCIHRLTF 201
             ++E+GP   HR ++
Sbjct: 192 AALRERGPCPEHRFSY 207


>gi|297569140|ref|YP_003690484.1| ribonuclease H [Desulfurivibrio alkaliphilus AHT2]
 gi|296925055|gb|ADH85865.1| Ribonuclease H [Desulfurivibrio alkaliphilus AHT2]
          Length = 218

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/182 (42%), Positives = 108/182 (59%), Gaps = 5/182 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS--SAIISI 83
           VAGIDE GRG LAGPVV A ++L          DSK++  + R  L  +I +       +
Sbjct: 30  VAGIDEAGRGPLAGPVVAACVVLPAGCEASRFRDSKQLKPELRCRLAAEIEALPGVYWGV 89

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPEDLPCQAFAVIKGDSI 142
              +   ID+ NI +A+L A+  AV  L   P   L+DG+  +P  LP QA  +++GDS 
Sbjct: 90  GVVAPAEIDRLNILQASLLAMQKAVAALAAEPDFLLVDGKHQLPLPLPQQA--LVRGDSR 147

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           S SIAAASIIAKV RD +M   H++YP Y F  H GY TA+H  ++++ GP  IHR +F+
Sbjct: 148 SASIAAASIIAKVRRDEIMADYHRRYPQYNFHRHKGYGTAEHLHLLRQHGPCPIHRRSFK 207

Query: 203 PL 204
           P+
Sbjct: 208 PV 209


>gi|124026648|ref|YP_001015763.1| ribonuclease HII and HIII [Prochlorococcus marinus str. NATL1A]
 gi|166226636|sp|A2C4T9|RNH2_PROM1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|123961716|gb|ABM76499.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. NATL1A]
          Length = 195

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/181 (38%), Positives = 104/181 (57%), Gaps = 5/181 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81
           +AG+DEVG+G L GPV  AA+IL   N    +  G+ DSKK+SH++R  L   I +++I 
Sbjct: 8   IAGVDEVGKGCLFGPVFAAAVILSKENEIELLNQGLKDSKKLSHRQRHNLVPLIKTNSIA 67

Query: 82  -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            +I  AS + ID   I  AT  A+  A+E     P   L+DG       P +    ++G+
Sbjct: 68  WTIGQASAREIDVIGIRDATEKAMLRALEKFSSPPDLILVDGILPIRLWPGKQKTQVRGE 127

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S   SIAAAS++AK TRD L++   +KY  YG + + GY T  H+  + ++G + +HR +
Sbjct: 128 SHFASIAAASVLAKETRDELIKRLARKYNCYGLEKNKGYGTEIHRTNLIKEGATKLHRKS 187

Query: 201 F 201
           F
Sbjct: 188 F 188


>gi|307325020|ref|ZP_07604224.1| Ribonuclease H [Streptomyces violaceusniger Tu 4113]
 gi|306889166|gb|EFN20148.1| Ribonuclease H [Streptomyces violaceusniger Tu 4113]
          Length = 233

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/177 (38%), Positives = 101/177 (57%), Gaps = 1/177 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           V GIDEVGRGA AGPV V A +      P G+ DSK +S KKR  L +++ S     ++ 
Sbjct: 23  VVGIDEVGRGAWAGPVTVCAAVTGLRRPPTGLTDSKLLSPKKRTTLAQELHSWVTAHALG 82

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            +S + ID   +  A   A   A++ L V P + ++DG+      P     VIKGD   +
Sbjct: 83  HSSPEEIDGLGMTAALRLAATRALDALPVRPDAVILDGKHDYLGTPWAVRTVIKGDQSCV 142

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           S+AAAS+IAKV RD +M     ++ D+ F+ + GYP+  H+  ++E GP+  HRL++
Sbjct: 143 SVAAASVIAKVRRDAMMAELGAEHMDFCFEDNAGYPSPVHRAALRELGPTPHHRLSW 199


>gi|92112710|ref|YP_572638.1| RNase HII [Chromohalobacter salexigens DSM 3043]
 gi|122420710|sp|Q1R019|RNH2_CHRSD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|91795800|gb|ABE57939.1| RNase HII [Chromohalobacter salexigens DSM 3043]
          Length = 200

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/186 (42%), Positives = 111/186 (59%), Gaps = 4/186 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSK +S K+R  L + I   +A  +++
Sbjct: 16  LAGVDEVGRGPLVGAVVAAAVILDPARPIEGLADSKTLSEKRRLALADAIREQAAACAVA 75

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-EDLPCQAFAVIKGDSIS 143
            AS + ID  NI  AT  A+  A++ L V     L+DG  +P   +P Q   V+KGD   
Sbjct: 76  EASAEEIDALNIFHATHLAMRRAIDALPVTAEYLLVDGNRMPGHHVPGQC--VVKGDRRH 133

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I AASI+AKVTRD  M   H+++P+YGF  H GYPT +H   ++  GP   HR +F P
Sbjct: 134 AAIGAASILAKVTRDAQMVALHERHPEYGFARHKGYPTREHLAALERLGPLEEHRRSFAP 193

Query: 204 LRNLSV 209
           ++   +
Sbjct: 194 VKQWQL 199


>gi|227504791|ref|ZP_03934840.1| ribonuclease HII [Corynebacterium striatum ATCC 6940]
 gi|227198641|gb|EEI78689.1| ribonuclease HII [Corynebacterium striatum ATCC 6940]
          Length = 213

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/195 (37%), Positives = 102/195 (52%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREELY 72
           E  + +  + PVAG+DE GRGA  GP+ +AA IL    IP    + DSKK+S   RE L+
Sbjct: 11  EVALSKAGLGPVAGVDEAGRGACCGPITIAACILPDKIIPELDKLTDSKKLSPATRERLF 70

Query: 73  EKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   A+  S+     + IDK  I  A +  +  AV  L V P   L D   +P  +P 
Sbjct: 71  PIIKDKAVAWSVVHIDARDIDKRGIQHANVSGMRRAVARLDVRPHYVLSDALKVP-GMPA 129

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +I GD+ +  IAAAS++AKV+RD +M      YP YG   H GY TA HQ  I + 
Sbjct: 130 PQLPIIGGDAAARCIAAASVLAKVSRDHIMDELDVAYPGYGLAGHKGYGTAAHQAAIVKL 189

Query: 192 GPSCIHRLTFRPLRN 206
           G +  HR+ +  + N
Sbjct: 190 GATPEHRMGYANVAN 204


>gi|254431100|ref|ZP_05044803.1| ribonuclease HII [Cyanobium sp. PCC 7001]
 gi|197625553|gb|EDY38112.1| ribonuclease HII [Cyanobium sp. PCC 7001]
          Length = 201

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/181 (38%), Positives = 101/181 (55%), Gaps = 5/181 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA-I 80
            AG+DEVGRG L GPV   A++L           G+ DSKK+S ++RE L   I  +A  
Sbjct: 14  CAGVDEVGRGCLFGPVFAGAVVLGAEAAAALTAQGLTDSKKLSARRREALLPLIREAAEA 73

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            ++  AS   ID   I +AT  A+  A+  L   P   L+DG       P +   +++GD
Sbjct: 74  WALGQASAAEIDGFGIRQATERAMQRALAKLPQPPALLLVDGVLPLRGWPGEQATLVRGD 133

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S + +IAAAS++AK  RD+LMR    ++P YG + H GY TA+H+  +   GP+ +HR +
Sbjct: 134 SRNAAIAAASVLAKQARDQLMRTLADRFPGYGLERHAGYGTAQHRAALLSLGPTALHRRS 193

Query: 201 F 201
           F
Sbjct: 194 F 194


>gi|299142243|ref|ZP_07035376.1| ribonuclease HII [Prevotella oris C735]
 gi|298576332|gb|EFI48205.1| ribonuclease HII [Prevotella oris C735]
          Length = 220

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/188 (39%), Positives = 106/188 (56%), Gaps = 15/188 (7%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL P+     +NDSKK+S ++R  L E+I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPPDYDNPALNDSKKLSVRQRYALREQIEHDALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG---------RSIP---EDLPCQA 133
           A+ + ID+ NI  A+  A++ A++ L+  P + ++DG         R +P   + LP   
Sbjct: 73  ATPEEIDEINILHASFLAMHRALDQLKKRPEAVIVDGNHFDPYVVGRGLPNAGKQLPHTC 132

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             VIKGD    +IAAASI+AK  RD  M    K YP Y ++ + GYPT KH   I E G 
Sbjct: 133 --VIKGDGKYQNIAAASILAKTYRDDYMTEQAKLYPFYDWEKNKGYPTKKHYAGIAEHGI 190

Query: 194 SCIHRLTF 201
             +HR ++
Sbjct: 191 CELHRRSY 198


>gi|332292284|ref|YP_004430893.1| Ribonuclease H [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170370|gb|AEE19625.1| Ribonuclease H [Krokinobacter diaphorus 4H-3-7-5]
          Length = 212

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/185 (37%), Positives = 100/185 (54%), Gaps = 8/185 (4%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSA 86
           G DE GRG LAGPV  AA++L  + I   + DSK ++ KKRE L   I   AI I  +  
Sbjct: 14  GTDEAGRGCLAGPVTAAAVMLPDDFINEILTDSKLLTEKKRELLKPIIEEQAIAIGFAHV 73

Query: 87  SHQYIDKHNIHKATLDAIYHAVENL-------QVIPRSALIDGRSIPEDLPCQAFAVIKG 139
               ID  NI  A++  ++ ++E++       Q  P+  L+DG             VIKG
Sbjct: 74  MMSEIDDINILNASILGMHRSIESMIGTLSRKQKKPQHILVDGNRFKPFPKIDHTTVIKG 133

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D   L IAAASIIAK  RD  M + H+++P Y +  + GYPT +H++ I+  G +  HR 
Sbjct: 134 DGKYLPIAAASIIAKTARDEYMNLIHEEFPMYNWKKNKGYPTKEHREAIRRYGITKYHRK 193

Query: 200 TFRPL 204
           +F+ L
Sbjct: 194 SFKLL 198


>gi|78211866|ref|YP_380645.1| RNase HII [Synechococcus sp. CC9605]
 gi|97189422|sp|Q3AMU2|RNH2_SYNSC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|78196325|gb|ABB34090.1| Ribonuclease H [Synechococcus sp. CC9605]
          Length = 199

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/186 (41%), Positives = 109/186 (58%), Gaps = 15/186 (8%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81
           VAG+DEVGRG L GPV  AA++L+ +     +  G+ DSKK+S K+R  L   I S  + 
Sbjct: 13  VAGVDEVGRGCLFGPVFAAAVVLEGSAAECLLKAGLTDSKKLSAKRRAALVPLIQSLCVA 72

Query: 82  S-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF-----A 135
           S +  AS + ID   I  AT  A+  A++ L   P   L+DG     +LP + +      
Sbjct: 73  SALGQASAREIDACGIRVATERAMLRALQRLPQSPGLVLVDG-----NLPLRLWHGPQRT 127

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           VI GDS S +IAAAS++AK  RD L+R    ++P YG + H GY TA+H+Q + + GP+ 
Sbjct: 128 VIAGDSRSAAIAAASVLAKEARDALIRRLSARFPGYGLERHAGYGTAQHRQSLIDSGPTP 187

Query: 196 IHRLTF 201
           +HR TF
Sbjct: 188 LHRHTF 193


>gi|225021101|ref|ZP_03710293.1| hypothetical protein CORMATOL_01113 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946101|gb|EEG27310.1| hypothetical protein CORMATOL_01113 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 236

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/194 (36%), Positives = 99/194 (51%), Gaps = 4/194 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKR 68
           H   E  + +  + PVAG+DE GRGA AGP+ +AA IL   P      + DSKK+S   R
Sbjct: 7   HRTFEVALHQAGLGPVAGVDEAGRGACAGPITIAACILPSQPLAALSRLTDSKKLSAATR 66

Query: 69  EELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
             L+  I   A+  SI   S   ID++ I  A +  +  AV  L V P   L D   + +
Sbjct: 67  AALFPLIQHHAVAWSILHISAADIDQYGIQHANVFGMRRAVALLDVQPGYVLTDALKV-D 125

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
              C    +I GD+ +  I+AAS++AK  RD +M    + YP Y F SH GY T  H   
Sbjct: 126 GFACSYLPIIGGDAAARCISAASVLAKHARDLVMAELAETYPRYEFASHKGYGTKVHMTA 185

Query: 188 IKEKGPSCIHRLTF 201
           ++  G S +HR ++
Sbjct: 186 VRRYGASPVHRYSY 199


>gi|293400516|ref|ZP_06644661.1| ribonuclease HII [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305542|gb|EFE46786.1| ribonuclease HII [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 207

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/181 (40%), Positives = 103/181 (56%), Gaps = 4/181 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDE GRG +AGP+VVAA+          I DSKK+S KKR+ L+++I   A    I 
Sbjct: 19  IIGIDEAGRGPIAGPLVVAAVSFPVGFSHESIYDSKKLSEKKRKALFQEIIQLASEYHIK 78

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S Q ID+ NI++AT  A+     +        L D   +P +      +++KGD  S+
Sbjct: 79  IVSPQIIDEQNIYRATQLAMLELSNSFHD-ADGVLTDAMPLP-NASLDVISLVKGDQKSV 136

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHRLTFRP 203
           SIAAASI+AKVTRD +M    K+YP YGF  H GYPT  H + +   G  + I+R ++ P
Sbjct: 137 SIAAASILAKVTRDCIMCAYDKQYPQYGFAKHKGYPTKGHLEAMHTYGVINDIYRKSYGP 196

Query: 204 L 204
           +
Sbjct: 197 V 197


>gi|295132562|ref|YP_003583238.1| ribonuclease HII [Zunongwangia profunda SM-A87]
 gi|294980577|gb|ADF51042.1| ribonuclease HII [Zunongwangia profunda SM-A87]
          Length = 199

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/177 (36%), Positives = 101/177 (57%), Gaps = 1/177 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS-AIISISS 85
            G DE GRG +AGPV  AA+IL  +     + DSKK++H+KR  L + I +  A   I+ 
Sbjct: 13  CGTDEAGRGCIAGPVTAAAVILPKHFENEFLRDSKKLTHQKRLLLKKIIENDCASYGITH 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
              + ID+ NI  +++ A++ ++E L   P   ++DG             ++KGD   LS
Sbjct: 73  IFMETIDEINILNSSILAMHKSIEKLSPEPEHIIVDGNRFKPFKNIAYECIVKGDDKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           IAAASI+AK  RD  M   H++YP Y +  + GYPT +H++ I++ G +  HR +F+
Sbjct: 133 IAAASILAKTYRDEYMESIHEEYPMYNWKKNKGYPTKEHREAIRKYGITKYHRKSFK 189


>gi|72382906|ref|YP_292261.1| ribonuclease HII [Prochlorococcus marinus str. NATL2A]
 gi|97189164|sp|Q46IX0|RNH2_PROMT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|72002756|gb|AAZ58558.1| RNase HII [Prochlorococcus marinus str. NATL2A]
          Length = 195

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/181 (37%), Positives = 103/181 (56%), Gaps = 5/181 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81
           +AG+DEVG+G L GPV  AA+IL   N    +  G+ DSKK+S ++R  L   I +++I 
Sbjct: 8   IAGVDEVGKGCLFGPVFAAAVILSKKNEIELLNQGLKDSKKLSQRQRHNLVPLIKTNSIA 67

Query: 82  -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            +I  AS + ID   I  AT  A+  A+E     P   L+DG       P +    ++G+
Sbjct: 68  WTIGQASAREIDVMGIRDATEKAMLRALEKFSSPPDLILVDGILPIRLWPGKQKTQVRGE 127

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S   SIAAAS++AK TRD L++   +KY  YG + + GY T  H+  + ++G + +HR +
Sbjct: 128 SHFASIAAASVLAKETRDELIKRLARKYNCYGLEKNKGYGTEIHRTKLIKEGATKLHRKS 187

Query: 201 F 201
           F
Sbjct: 188 F 188


>gi|312194955|ref|YP_004015016.1| ribonuclease H [Frankia sp. EuI1c]
 gi|311226291|gb|ADP79146.1| Ribonuclease H [Frankia sp. EuI1c]
          Length = 240

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/205 (39%), Positives = 119/205 (58%), Gaps = 12/205 (5%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKRE 69
           F  E  +  + + PVAG+DE GRGA AGP+VVAA+ILDP        + DSK ++ + RE
Sbjct: 15  FGYERALARRGLGPVAGVDEAGRGACAGPLVVAAVILDPRRTGRLAELADSKLLTERIRE 74

Query: 70  ELYEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
            +YE + + A    ++ I +A    ID+H +H   +  +  AV  L + P   L+DG  +
Sbjct: 75  RVYEDVLAVASAWSVVVIPAAE---IDRHGLHVMNITGMRRAVARLAIHPGYVLVDGFPV 131

Query: 126 PE-DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           P  D P  + AV KGD ++  +AAAS++AKVTRDR+M    ++Y +Y F  H GY TA H
Sbjct: 132 PGIDTP--SLAVRKGDRVAACVAAASVVAKVTRDRIMCQLDERYGEYDFAQHKGYVTAAH 189

Query: 185 QQVIKEKGPSCIHRLTFRPLRNLSV 209
              +   GP   HRL++  +++L V
Sbjct: 190 AAALARHGPCEEHRLSYANVQSLIV 214


>gi|256419897|ref|YP_003120550.1| ribonuclease H [Chitinophaga pinensis DSM 2588]
 gi|256034805|gb|ACU58349.1| Ribonuclease H [Chitinophaga pinensis DSM 2588]
          Length = 220

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/187 (41%), Positives = 111/187 (59%), Gaps = 3/187 (1%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
           +K++   AG DE GRG LAGPV  AA+IL P      +NDSK++    R++L E +   A
Sbjct: 7   QKDIAFEAGCDEAGRGCLAGPVFAAAVILPPKFRNKLLNDSKQLKASDRDKLREVVEKEA 66

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLPCQAFAVI 137
           I  +++S  +  ID+ NI KA+  A++ A++ L+  P   L+DG R +P      A  ++
Sbjct: 67  IAYAVASVDNLEIDRINILKASFRAMHLALDQLKQQPGYILVDGNRFVPYGKTPHA-CIV 125

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGD I  SIAAASI+AK  RD  M   H++YP +G+  + GYPT  H+  I+  G +  H
Sbjct: 126 KGDGIYASIAAASILAKTYRDEYMHKLHQEYPHFGWLENKGYPTLFHRDAIRAHGETPYH 185

Query: 198 RLTFRPL 204
           R TFR L
Sbjct: 186 RKTFRLL 192


>gi|300813510|ref|ZP_07093850.1| ribonuclease HII [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300512378|gb|EFK39538.1| ribonuclease HII [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 168

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 98/170 (57%), Gaps = 9/170 (5%)

Query: 35  GALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDK 93
           G+L G V+  AII+  ++   G+NDSKK++ KKR+ELY KI   ++ + I  A  + IDK
Sbjct: 1   GSLFGDVLSCAIIMKEDSNIEGVNDSKKLTAKKRKELYNKILKDSLAVGIGRADAKTIDK 60

Query: 94  HNIHKATLDAIYHAVENLQ------VIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147
            NI  AT  ++  A+ENL+      V+P   LID  +I   +     ++IKGD    SIA
Sbjct: 61  LNIKMATHLSMVRAIENLRDSQGNLVVPDLVLIDAENIETTIF--QHSIIKGDENCYSIA 118

Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
            ASIIAKV RD L       YP YG + H GY T  H++ +K  GPS +H
Sbjct: 119 CASIIAKVYRDSLCDKWATIYPGYGIEKHKGYGTKFHREALKAYGPSPMH 168


>gi|87199856|ref|YP_497113.1| ribonuclease H [Novosphingobium aromaticivorans DSM 12444]
 gi|97189114|sp|Q2G794|RNH2_NOVAD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|87135537|gb|ABD26279.1| RNase HII [Novosphingobium aromaticivorans DSM 12444]
          Length = 196

 Score =  111 bits (277), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/192 (39%), Positives = 108/192 (56%), Gaps = 11/192 (5%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87
           G+DE GRG LAGPVV AA++L     P G++DSKK+S  +R EL EKI      ++    
Sbjct: 5   GVDEAGRGPLAGPVVAAAVVLCKPR-PSGLDDSKKLSAARRAELEEKIKRRCRWAVGVVE 63

Query: 88  HQYIDKHNIHKATLDAIYHAVENL--QVI----PRSALIDGRSIPE----DLPCQAFAVI 137
              ID+ NI  AT+ A+  AV  L  Q+         L+DG   P     +    A  ++
Sbjct: 64  PDEIDRLNIFGATMLAMTLAVGALCEQLAHDEDVGEVLVDGNLTPHGRRPEWCWPARPIV 123

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
            GD++   I+AASIIAK  RDRLMR A   +P YG++ + GY T +H   ++E GP+ +H
Sbjct: 124 GGDALEPCISAASIIAKEHRDRLMREAALAHPHYGWERNAGYGTPEHLAALREHGPTPLH 183

Query: 198 RLTFRPLRNLSV 209
           R +F P+  L +
Sbjct: 184 RRSFAPVAQLQL 195


>gi|219121434|ref|XP_002185941.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209582790|gb|ACI65411.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 194

 Score =  110 bits (276), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 15/194 (7%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKIT---SS 78
           V G DE G G +AGPVV A+  +  N        G++DSK +S K RE +YE I    S 
Sbjct: 1   VIGSDESGSGCIAGPVVTASCCVRDNAADGLWIDGVDDSKSLSTKDRERIYEAIVQNPSR 60

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS--------ALIDGRSIPEDLP 130
            + SI   S   ID+ +   ATL+    ++E++    R+        +++DG   P+   
Sbjct: 61  YLWSIQERSAAEIDEQSATNATLNCFQDSIEDVVSQLRAEYPHCQPYSIVDGHRSPKVDG 120

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
           C +    +GD+   ++A ASI+A+VTRDR M +A  KYP Y FD + GYP+  H +++ +
Sbjct: 121 CTSRPWKQGDAYVYTVALASILARVTRDRHMALAAVKYPLYDFDRNGGYPSRAHTEILHQ 180

Query: 191 KGPSCIHRLTFRPL 204
            G S IHR + +P+
Sbjct: 181 HGYSPIHRQSCKPV 194


>gi|94985723|ref|YP_605087.1| ribonuclease H [Deinococcus geothermalis DSM 11300]
 gi|94556004|gb|ABF45918.1| Ribonuclease H [Deinococcus geothermalis DSM 11300]
          Length = 224

 Score =  110 bits (276), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/199 (35%), Positives = 107/199 (53%), Gaps = 3/199 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P +  E     +  + VAG+DE GRGA AGPV VAA+IL      +   DSK+++  +RE
Sbjct: 23  PDWAFEREHWRRGYFRVAGVDEAGRGAWAGPVTVAAVILPGLATEYPFRDSKQLTPAQRE 82

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            L  ++   A+  ++  A  + I++ NI  AT  A   A+  L   P++ + D   +   
Sbjct: 83  ALAAQVRQVAVAWAVEHAWPEEIERLNILGATHAAAARALARLDPPPQALVTDYLRLRTA 142

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LP    A  K D++S S+AAAS++AK  RDRLM     +YP YGF +H GY    H+  +
Sbjct: 143 LPL--LAPPKADALSYSVAAASLLAKTERDRLMAELDARYPGYGFAAHKGYGAPAHRAAL 200

Query: 189 KEKGPSCIHRLTFRPLRNL 207
           +  G S +HR  + P+  L
Sbjct: 201 ERLGVSELHRRGYAPIARL 219


>gi|332701663|ref|ZP_08421751.1| Ribonuclease H [Desulfovibrio africanus str. Walvis Bay]
 gi|332551812|gb|EGJ48856.1| Ribonuclease H [Desulfovibrio africanus str. Walvis Bay]
          Length = 211

 Score =  110 bits (276), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/183 (43%), Positives = 109/183 (59%), Gaps = 8/183 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DE GRG LAGPVV AA++L       G+ DSK +S  +R  L   I + A+  ++ 
Sbjct: 13  VAGVDEAGRGCLAGPVVAAAVVLPAYVKLPGLADSKLLSPAERARLEPLIKTRALAWAVG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLPCQAF----AVIKG 139
            +    ID+ N+ +ATL A+  AV  L++ P   L+DG + IPE L    F    A++ G
Sbjct: 73  VSWPPEIDERNVLRATLLAMSRAVRALKLSPDELLVDGNQCIPEGL--VGFIPQRAIVDG 130

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D +   I+AAS++AK  RDRLM    + YP YGF  H GY T +H Q + E GPS +HRL
Sbjct: 131 DRLVRCISAASVLAKTFRDRLMGKLERLYPGYGFARHKGYGTREHLQALVELGPSRMHRL 190

Query: 200 TFR 202
           TFR
Sbjct: 191 TFR 193


>gi|296273902|ref|YP_003656533.1| ribonuclease H [Arcobacter nitrofigilis DSM 7299]
 gi|296098076|gb|ADG94026.1| Ribonuclease H [Arcobacter nitrofigilis DSM 7299]
          Length = 178

 Score =  110 bits (276), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 68/183 (37%), Positives = 106/183 (57%), Gaps = 18/183 (9%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           + GIDE GRG LAGP+ VA ++L   N   G+NDSKK+S K+RE+L+++I  ++   I  
Sbjct: 2   LCGIDEAGRGPLAGPLCVAGVVL--KNPIEGLNDSKKLSEKRREKLFDEIILNSYYHIVF 59

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV------IKG 139
            S + +D+  +     ++I   ++N++      L+DG +        +F +      IK 
Sbjct: 60  TSAKTLDELGLSLCLKNSIEEIMQNVKA--NEYLMDGNT--------SFGIEGLKHEIKA 109

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D+    ++AASI+AKV+RDR M    +KYP+Y F+ H GY T  H  +IKE G S  HR 
Sbjct: 110 DANYEEVSAASILAKVSRDRYMVEISQKYPNYLFEKHKGYGTKAHIDLIKEFGRSEEHRY 169

Query: 200 TFR 202
           +F+
Sbjct: 170 SFK 172


>gi|315637835|ref|ZP_07893025.1| ribonuclease HII [Campylobacter upsaliensis JV21]
 gi|315482076|gb|EFU72690.1| ribonuclease HII [Campylobacter upsaliensis JV21]
          Length = 174

 Score =  110 bits (276), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 104/178 (58%), Gaps = 8/178 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           + GIDE GRGALAGP+ +AA  +L P N    + DSKK+S KKRE+LY +I  ++   I 
Sbjct: 2   LVGIDEAGRGALAGPLFMAACELLKPLN---ELKDSKKLSEKKREKLYNEIILNSNYLIL 58

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           + S+  ID   + K     +   + +L    +  + DG +    L  +   +IK DS+  
Sbjct: 59  AFSNAQIDTLGLSKCLQRGL--EIIHLHFEKQRKIFDGNTNYGVLGIEN--LIKADSLIA 114

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            ++AASI+AKV+RD++M+    KYP YGF+ H  Y T  H++ I + G   +HRL+F+
Sbjct: 115 EVSAASILAKVSRDKVMQFLALKYPQYGFEIHKAYGTKAHRESIAKYGACKLHRLSFK 172


>gi|282859032|ref|ZP_06268168.1| ribonuclease HII [Prevotella bivia JCVIHMP010]
 gi|282588200|gb|EFB93369.1| ribonuclease HII [Prevotella bivia JCVIHMP010]
          Length = 201

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 103/181 (56%), Gaps = 5/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  N     +NDSK++S K R  L ++I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPENYHNDRLNDSKQLSAKARYALRKEIERDAMAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143
            +   IDK NI  A++ A++ A++ L + P + ++DG       D+P     +IKGD   
Sbjct: 73  VTPAEIDKINILNASILAMHRALDQLTLRPEAIIVDGNRFKAYHDIPHTT--IIKGDGKY 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           LSIAAASI+AK  RD  M    K+YP Y +  ++GYPT  H+  I + G +  HR ++  
Sbjct: 131 LSIAAASILAKTYRDDYMLKLAKEYPIYDWQHNMGYPTKAHRAAIAQYGITPYHRKSYNL 190

Query: 204 L 204
           L
Sbjct: 191 L 191


>gi|239982734|ref|ZP_04705258.1| ribonuclease HII [Streptomyces albus J1074]
 gi|291454583|ref|ZP_06593973.1| ribonuclease HII [Streptomyces albus J1074]
 gi|291357532|gb|EFE84434.1| ribonuclease HII [Streptomyces albus J1074]
          Length = 233

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/183 (36%), Positives = 99/183 (54%), Gaps = 1/183 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRGA AGPV V A +      P G+ DSK ++ K+R  L  ++       +  
Sbjct: 23  VAGVDEVGRGAWAGPVSVCAAVTGLRRAPEGLTDSKLLAPKRRTALAGELEGWVTAYAFG 82

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            +S + ID   +  A   A   A+E L V P + ++DG+      P +   VIKGD   +
Sbjct: 83  HSSPEEIDDLGMTAALRLAAVRALEGLPVRPDAVILDGKHDYLGAPWKVRTVIKGDQSCV 142

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            +AAAS++AKV RD +M      + D+ F  + GYP+  HQ  + E+GP+  HRL++  L
Sbjct: 143 CVAAASVLAKVRRDAMMAELGVGHEDFCFADNAGYPSPAHQAALAERGPTPYHRLSWAYL 202

Query: 205 RNL 207
             L
Sbjct: 203 DAL 205


>gi|28210941|ref|NP_781885.1| ribonuclease HII [Clostridium tetani E88]
 gi|39932379|sp|Q895L8|RNH2_CLOTE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|28203380|gb|AAO35822.1| ribonuclease HII [Clostridium tetani E88]
          Length = 271

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/203 (40%), Positives = 117/203 (57%), Gaps = 17/203 (8%)

Query: 15  EAMVREKNMWP----------VAGIDEVGRGALAGPVVVAAIILDP-----NNIPFGIND 59
           E +VR K M+           +AG+DEVGRG LAGP+V AA+ILD      N++ +G+ D
Sbjct: 65  EEIVRLKKMYDFDKKFANNVLIAGVDEVGRGPLAGPIVAAAVILDLNYKNHNDLFYGLKD 124

Query: 60  SKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118
           SKK+  K+RE L   I   A+  +I    +  ID   I     + +  +   L+V P   
Sbjct: 125 SKKLRAKERENLSHIIKDKALYYNIFELDNHMIDTSGIAWCNNEVLKKSTLGLEVTPGIV 184

Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
           + DG SI +++  +   +IKGD+ S SIAAASIIAKV RD+ M    K YP YGF+ + G
Sbjct: 185 ISDGFSI-KNINIKNEYIIKGDAKSASIAAASIIAKVYRDKKMEEYSKIYPHYGFEKNSG 243

Query: 179 YPTAKHQQVIKEKGPSCIHRLTF 201
           Y T +H + +K+ GP  IHR++F
Sbjct: 244 YGTDEHTKALKKYGPCPIHRMSF 266


>gi|238063313|ref|ZP_04608022.1| ribonuclease HII [Micromonospora sp. ATCC 39149]
 gi|237885124|gb|EEP73952.1| ribonuclease HII [Micromonospora sp. ATCC 39149]
          Length = 270

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/193 (36%), Positives = 106/193 (54%), Gaps = 4/193 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKRE 69
           + LE  ++ +    VAG DE GRGA AGP+V AA +L         G+ DSK ++   RE
Sbjct: 16  YALERALQRRGFRHVAGADEAGRGACAGPLVAAAAVLPEGRRGEIDGLADSKLLTPASRE 75

Query: 70  ELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            +Y+++ +SA+  ++       +D   +H   L A+  A+ +L   P   L DG  + + 
Sbjct: 76  RVYDQVVASALAYAVVVIPADEVDARGLHVCNLAAMRRALASLTTRPDYVLTDGFGV-DG 134

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L     AV KGD ++  +AAAS++AKVTRDR+M      +P YGF  H GY TA+H   +
Sbjct: 135 LDVPGLAVWKGDRVAACVAAASVLAKVTRDRIMVELDASFPGYGFAEHKGYITAEHTAAL 194

Query: 189 KEKGPSCIHRLTF 201
           +E GP   HR ++
Sbjct: 195 REHGPCLEHRFSY 207


>gi|25028481|ref|NP_738535.1| ribonuclease HII [Corynebacterium efficiens YS-314]
 gi|259507538|ref|ZP_05750438.1| ribonuclease HII [Corynebacterium efficiens YS-314]
 gi|39932418|sp|Q8FP63|RNH2_COREF RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|23493766|dbj|BAC18735.1| putative ribonuclease HII [Corynebacterium efficiens YS-314]
 gi|259164858|gb|EEW49412.1| ribonuclease HII [Corynebacterium efficiens YS-314]
          Length = 231

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/193 (36%), Positives = 99/193 (51%), Gaps = 10/193 (5%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72
           E  +    + PVAG+DE GRGA  GP+ +AA IL    I     + DSK++S   R  L 
Sbjct: 14  EVALSRHGLGPVAGVDEAGRGACCGPISIAACILPDRPIADLAVLTDSKQLSPPVRARLM 73

Query: 73  EKITSSAI----ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
             +   A+    I IS+A    ID+  I  A +  +  AV  L+V P   L D   IP  
Sbjct: 74  PLVKKHAVAWSVIHISAAD---IDRFGIQHANISGMRRAVAALEVRPGYVLTDAFRIP-G 129

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LPC +  +  GD+ +  IAAAS++AK TRD +M    +++P YG   H GY T  H   +
Sbjct: 130 LPCPSLPIPGGDASARCIAAASVLAKQTRDEIMTDMAQQFPQYGLAGHKGYSTKVHMDAV 189

Query: 189 KEKGPSCIHRLTF 201
           +  G S  HR ++
Sbjct: 190 RRHGASPQHRYSY 202


>gi|220912962|ref|YP_002488271.1| ribonuclease HII [Arthrobacter chlorophenolicus A6]
 gi|219859840|gb|ACL40182.1| Ribonuclease H [Arthrobacter chlorophenolicus A6]
          Length = 260

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/218 (36%), Positives = 112/218 (51%), Gaps = 24/218 (11%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD-PNNIPF-GINDSKKISHKK 67
           P    E   + + +  +AG+DEVGRGALAGPV V   ++D     P  G+ DSK +   +
Sbjct: 30  PTLRHERTFKAQGVRFLAGVDEVGRGALAGPVSVGIAVVDLERQKPLAGVRDSKLLRATE 89

Query: 68  REELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDG- 122
           RE L   +   ++ S +  AS   ID   I  A   A   A +++    VIP   L+DG 
Sbjct: 90  RERLEPLVRRWSVASAVGHASAHEIDALGIIAALRLAGTRAWQDILAAGVIPDMVLLDGS 149

Query: 123 --------------RSIPEDLPCQA--FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166
                         +  PE   C A     +K D   LS+AAAS+IAKV RDR MR  H 
Sbjct: 150 HNWLSPAEQLSLFDQEAPE-AACDAPVHTKVKADMQCLSVAAASVIAKVERDRTMRELHA 208

Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +YPD+G+D + GY T  H+ V++  GP+  HR+++R L
Sbjct: 209 EYPDFGWDINNGYATVLHRDVLRAAGPTPYHRVSWRLL 246


>gi|269926380|ref|YP_003323003.1| Ribonuclease H [Thermobaculum terrenum ATCC BAA-798]
 gi|269790040|gb|ACZ42181.1| Ribonuclease H [Thermobaculum terrenum ATCC BAA-798]
          Length = 219

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 109/208 (52%), Gaps = 8/208 (3%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN-----NIPFGINDS 60
           I E+     E  +  +    VAG+DE GRGA AGPV  A ++L P+     ++   + DS
Sbjct: 8   IEEKGFHPFEPTLWRQGYAYVAGLDEAGRGAWAGPVFGAVVVLPPDLSTLESLAEVVRDS 67

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           K +S  +RE  YE I +SA+ I I +++   ID   I +AT  A   A+ +   +P   L
Sbjct: 68  KVLSPNRRELAYEAIKASALYIGIGASTPDEIDTLGISRATELAWLRALRDAD-LPDVLL 126

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           ID   I         A++ GD++ LSIAAAS++AKV RDR M    +  P + F  H GY
Sbjct: 127 IDAFKI-RACSINQVAIVDGDALCLSIAAASVVAKVLRDRYMADLTEYVPGFSFHKHKGY 185

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
            T +HQ  I   G +  HR +F P+  +
Sbjct: 186 GTREHQAEIAIYGVTPQHRRSFAPISTV 213


>gi|261881041|ref|ZP_06007468.1| ribonuclease HII [Prevotella bergensis DSM 17361]
 gi|270332223|gb|EFA43009.1| ribonuclease HII [Prevotella bergensis DSM 17361]
          Length = 226

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/207 (37%), Positives = 109/207 (52%), Gaps = 31/207 (14%)

Query: 27  AGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
           AG DE GRG LAG V  AA+IL  D +N  F  NDSK++S KKR  L E+I   A+  ++
Sbjct: 13  AGCDEAGRGCLAGSVFAAAVILPKDYDNPDF--NDSKQLSKKKRYALREQIIRDAVAWAV 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI------------------ 125
              +   ID+ NI  A+  A++ A++ L V P + +IDG                     
Sbjct: 71  GIVTPAEIDRINILHASFLAMHRAIDQLAVRPEALIIDGNRFDPYKPLSENATEGRKERV 130

Query: 126 ---PED---LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
              P+D   LP Q   ++KGD    +IAAASI+AK  RD  M   H +YP Y ++S+ GY
Sbjct: 131 VTRPDDPAVLPWQC--IVKGDGKYQNIAAASILAKTFRDDYMDELHLQYPMYHWNSNKGY 188

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           PT  H++ I   G +  HR ++  L N
Sbjct: 189 PTRIHREAIARYGITPFHRKSYNLLGN 215


>gi|83589825|ref|YP_429834.1| ribonuclease H [Moorella thermoacetica ATCC 39073]
 gi|97182952|sp|Q2RJU8|RNH2_MOOTA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|83572739|gb|ABC19291.1| RNase HII [Moorella thermoacetica ATCC 39073]
          Length = 206

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/192 (38%), Positives = 108/192 (56%), Gaps = 2/192 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +  E  ++ + +  +AG+DE GRG LAGPV  AA+IL P     G+NDSKK+   +R EL
Sbjct: 15  YAWERRLQRQGVARIAGVDEAGRGPLAGPVTAAAVILPPGLFIAGLNDSKKVPPARRREL 74

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
              I   ++   I   S + ID  NI  A+  A+  A+  L + P   LIDG  +P  L 
Sbjct: 75  AAVIKKESLAWGIGWVSVKEIDCLNILAASRWAMRRALSALAIRPDHVLIDGMELP-GLK 133

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                ++ GD++S SIAAASI+AKV RD LM      +  YG   + GYPT +H++ ++ 
Sbjct: 134 IPQTPLVGGDALSASIAAASILAKVARDELMVAYDAVFQGYGLAGNKGYPTREHREALRR 193

Query: 191 KGPSCIHRLTFR 202
            GP  +HR +F+
Sbjct: 194 LGPCALHRRSFK 205


>gi|157414103|ref|YP_001484969.1| ribonuclease HII [Prochlorococcus marinus str. MIT 9215]
 gi|166991069|sp|A8G702|RNH2_PROM2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157388678|gb|ABV51383.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9215]
          Length = 205

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/185 (38%), Positives = 102/185 (55%), Gaps = 5/185 (2%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-SAIIS 82
           GIDEVGRGA+ GPV  A ++L   N       G+ DSKK++ KKR+ L  KI   S+   
Sbjct: 20  GIDEVGRGAIFGPVFSAVVVLTEKNKFLLKQLGVKDSKKLTPKKRKFLVPKILLLSSDYG 79

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I  +S + ID   I  AT  ++  A++ L+  P   ++DG  +          ++ GDS 
Sbjct: 80  IGQSSVREIDNLGIRVATELSMIRALKKLKEKPSELIVDGPLLLRPWRGTQKNIVSGDSK 139

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            +SIA+ASI+AKV+RD LM    KKY  Y    + GY T +H  +IK+ G + +HR +F 
Sbjct: 140 FISIASASIVAKVSRDNLMMKLEKKYSGYLIFKNKGYGTREHLSLIKKNGVTNLHRKSFL 199

Query: 203 PLRNL 207
              NL
Sbjct: 200 KKSNL 204


>gi|213962065|ref|ZP_03390330.1| ribonuclease HII [Capnocytophaga sputigena Capno]
 gi|213955418|gb|EEB66735.1| ribonuclease HII [Capnocytophaga sputigena Capno]
          Length = 198

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/189 (36%), Positives = 104/189 (55%), Gaps = 9/189 (4%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  A +IL P+     + DSK+++ K+R  L   I   A+  ++  
Sbjct: 12  AGTDEAGRGCLAGPVTAAGVILPPDFKNDLLTDSKQLTEKQRNLLRPIIEREAVAYAVCH 71

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF---AVIKGDSI 142
                ID+ NI +A++ A++ A+  L   P    +DG      +P Q      V+KGD  
Sbjct: 72  VLPAEIDELNILRASITAMHRAIAQLSPTPEFIAVDGNKF---VPYQKIPYACVVKGDGK 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +IAAASI+AK  RD  M    +++P+Y +  + GYPT +H++ I E G +  HR TF+
Sbjct: 129 IQTIAAASILAKTYRDAYMEDLAQQFPEYHWQQNKGYPTPEHRKAIAEHGATEHHRKTFQ 188

Query: 203 --PLRNLSV 209
             P+  LS+
Sbjct: 189 LLPVEQLSL 197


>gi|315225093|ref|ZP_07866910.1| ribonuclease HII [Capnocytophaga ochracea F0287]
 gi|314944776|gb|EFS96808.1| ribonuclease HII [Capnocytophaga ochracea F0287]
          Length = 198

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/189 (36%), Positives = 106/189 (56%), Gaps = 9/189 (4%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL  +     + DSK+++ K+R  L   I   A+  ++  
Sbjct: 12  AGTDEAGRGCLAGPVTAAAVILPSDFKNDLLTDSKQLTEKQRNLLRPIIEREAVAYAVCH 71

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF---AVIKGDSI 142
                ID+ NI +A++ A++ A+  L++ P    +DG      +P Q      V+KGD  
Sbjct: 72  VLPAEIDELNILRASITAMHRAIAQLKITPDFIAVDGNKF---VPYQKIPYACVVKGDGK 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +IAAASI+AK  RD  M    +++P+Y +  + GYPT +H++ I E G +  HR TF+
Sbjct: 129 IQTIAAASILAKTYRDAYMEDLAQQFPEYHWQQNKGYPTPEHRKAIAEYGATKHHRKTFQ 188

Query: 203 --PLRNLSV 209
             P+  LS+
Sbjct: 189 LLPVEQLSL 197


>gi|126663331|ref|ZP_01734329.1| ribonuclease HII [Flavobacteria bacterium BAL38]
 gi|126624989|gb|EAZ95679.1| ribonuclease HII [Flavobacteria bacterium BAL38]
          Length = 219

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 106/204 (51%), Gaps = 33/204 (16%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSA 86
           G DE GRG LAGPV  AAI+L  +     +NDSK++S K R++L   +   AI  +++  
Sbjct: 14  GTDEAGRGCLAGPVTAAAILLPEHFENTLLNDSKQLSEKNRKKLRPILEELAISYAVTHI 73

Query: 87  SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG------------------------ 122
               ID+ NI  A++ A+  ++  L   P   ++DG                        
Sbjct: 74  FSNEIDEINILNASMKAMQKSILQLNTKPEYIIVDGNRPLNGKLGMKQKTGKIFSEEEIQ 133

Query: 123 --RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
             +SIP        +++KGD+  LSIAAAS++AK  RD  M   H+++P Y +  + GYP
Sbjct: 134 FLKSIPNT------SIVKGDAKYLSIAAASVLAKTYRDDYMDAIHEEFPMYNWKKNKGYP 187

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPL 204
           T +H++ IK+ G    HR++FR L
Sbjct: 188 TVEHREAIKKYGACKYHRMSFRLL 211


>gi|256827134|ref|YP_003151093.1| ribonuclease HII [Cryptobacterium curtum DSM 15641]
 gi|256583277|gb|ACU94411.1| ribonuclease HII [Cryptobacterium curtum DSM 15641]
          Length = 262

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/182 (40%), Positives = 101/182 (55%), Gaps = 14/182 (7%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87
           G+DEVGRG LAGP+ VAA++L        +NDSK++S  +REE+   +   AI    + S
Sbjct: 77  GLDEVGRGPLAGPLTVAAVVLPEAPHIAHLNDSKQLSASRREEVAAAVKDVAI----AWS 132

Query: 88  HQYIDKHNIHKATLDAIYH--------AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
            Q+I   +I  A + A           AVE   V     L+DG  +  D+  + F  IKG
Sbjct: 133 VQHIAPEDIDDAGMSACLRRAFGRAVAAVETAGVAIDVVLLDGNPLHFDVRERTF--IKG 190

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D+    IAAAS++AKV RD LM  A + YP YGFD + GY +A+H   IK+ G   +HR 
Sbjct: 191 DARLACIAAASVVAKVERDELMTQAAQTYPVYGFDRNKGYGSAEHIAAIKKYGLCPLHRR 250

Query: 200 TF 201
           +F
Sbjct: 251 SF 252


>gi|195953419|ref|YP_002121709.1| Ribonuclease H [Hydrogenobaculum sp. Y04AAS1]
 gi|195933031|gb|ACG57731.1| Ribonuclease H [Hydrogenobaculum sp. Y04AAS1]
          Length = 213

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/189 (39%), Positives = 101/189 (53%), Gaps = 14/189 (7%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG------INDSKKISHKKREELYEK 74
           K    +A +DE GRGALAGP+VV AI++D  +I F         DSKK+    R   ++ 
Sbjct: 27  KRGLTLACVDEAGRGALAGPLVVGAILVDNLDIFFEEEYTLIKGDSKKLKEADRFWAFDT 86

Query: 75  ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQV--IPRSALIDGRSIPEDLPCQ 132
           I      S+  A+HQ ID   I KAT  A+  A+E L+   I  S  I+     ED  C 
Sbjct: 87  IKKYFKYSVGIATHQEIDDFGITKATKMAMKRALEALKGFDIVLSDFIN----LEDYDC- 141

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              ++KGD  S SI  AS++AK TRD++M      +  + FD H GY T +H + IK+ G
Sbjct: 142 -IPIVKGDEKSFSIRLASLVAKATRDKMMIDYASSFKPFSFDKHKGYGTKEHIKEIKDFG 200

Query: 193 PSCIHRLTF 201
            S IHR +F
Sbjct: 201 LSSIHRRSF 209


>gi|87301873|ref|ZP_01084707.1| ribonuclease HII [Synechococcus sp. WH 5701]
 gi|87283441|gb|EAQ75396.1| ribonuclease HII [Synechococcus sp. WH 5701]
          Length = 198

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/182 (37%), Positives = 101/182 (55%), Gaps = 7/182 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA-I 80
           +AG+DEVGRG L GPV  AA++L           G+ DSK +  + R+ L   IT+ A  
Sbjct: 6   LAGVDEVGRGCLFGPVFAAAVVLPAQAAAPLAAAGLTDSKALRPRHRQRLVPLITAQAEA 65

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL-PCQAFAVIKG 139
            ++  AS   ID   I  AT  A+  A++ L   P   ++DG  +P  L P +   ++ G
Sbjct: 66  WALGQASAADIDHIGIRAATEKAMVRALQRLPQAPALVVVDG-VLPLRLWPGRQRTLVHG 124

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D   L+IAAAS++AK  RD L+    + +P YG + H GY TA H++ +   GPS +HRL
Sbjct: 125 DRRCLAIAAASVLAKQARDALIVRLAEGFPGYGLERHAGYGTALHREALIRLGPSRLHRL 184

Query: 200 TF 201
           +F
Sbjct: 185 SF 186


>gi|86742269|ref|YP_482669.1| ribonuclease HII [Frankia sp. CcI3]
 gi|123764526|sp|Q2J702|RNH2_FRASC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|86569131|gb|ABD12940.1| Ribonuclease H [Frankia sp. CcI3]
          Length = 240

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/196 (37%), Positives = 111/196 (56%), Gaps = 10/196 (5%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKRE 69
           F  E  +    + PVAG+DE GRGA AGP+V+AA+IL P        + DSK ++ + RE
Sbjct: 15  FGYERALNRHGLGPVAGVDEAGRGACAGPLVIAAVILAPEARQRLARLADSKLLTEQIRE 74

Query: 70  ELYEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
            ++E + ++A     + IS+A    ID+  +H A +  +  AV  L   P   L DG ++
Sbjct: 75  SVFEDVMAAAAAWSTVVISAAE---IDRVGLHVANITGMRRAVARLSARPGYVLTDGFAV 131

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
                 ++ AV+KGD +   +AAAS++AKVTRDR+MR  H +Y +Y F  H GY TA H 
Sbjct: 132 A-GFGVESLAVVKGDRVVACVAAASVVAKVTRDRIMRALHTRYAEYDFAQHKGYVTAAHA 190

Query: 186 QVIKEKGPSCIHRLTF 201
             +   GP   HR+++
Sbjct: 191 AALARCGPCDEHRMSY 206


>gi|330466295|ref|YP_004404038.1| ribonuclease H [Verrucosispora maris AB-18-032]
 gi|328809266|gb|AEB43438.1| ribonuclease H [Verrucosispora maris AB-18-032]
          Length = 270

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/193 (36%), Positives = 107/193 (55%), Gaps = 4/193 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKRE 69
           + LE  ++ +    VAG DE GRGA AGP+V AA +L         G+ DSK ++   RE
Sbjct: 16  YALERALQRRGFRYVAGADEAGRGACAGPLVAAAAVLPEGRRGEIDGLADSKLLTPASRE 75

Query: 70  ELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            +Y+++ + A+  ++     + +D   +H   L A+  A+ +L V P   L DG  + + 
Sbjct: 76  RVYDEVVARALAYAVVVIPAEEVDARGLHVCNLAAMRRALASLTVRPEYVLTDGFGV-DG 134

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L     AV KGD ++  +AAAS++AKVTRDR+M     ++P YGF  H GY TA H   +
Sbjct: 135 LDVPGLAVWKGDRVAACVAAASVLAKVTRDRIMVDLDAEHPGYGFAEHKGYITADHTAAL 194

Query: 189 KEKGPSCIHRLTF 201
           +E GP   HR ++
Sbjct: 195 REHGPCREHRFSY 207


>gi|219848742|ref|YP_002463175.1| ribonuclease HII [Chloroflexus aggregans DSM 9485]
 gi|254807969|sp|B8GBB1|RNH2_CHLAD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|219543001|gb|ACL24739.1| Ribonuclease H [Chloroflexus aggregans DSM 9485]
          Length = 212

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/204 (37%), Positives = 115/204 (56%), Gaps = 7/204 (3%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII-----LDPNNIPFGINDSKKIS 64
           P   +E  +  +    +AGIDE GRG  AGPVV AA++      +   +   ++DSK+++
Sbjct: 3   PDLSIEQTLLARGYRVLAGIDEAGRGCWAGPVVAAAVVLAPIVYERPGLLDAVDDSKQLT 62

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
              RE  Y  +   A  I + +     +D + I  AT  A+  A+ +L     + LID  
Sbjct: 63  AVARERAYTLVQRYARGIGVGTVPAFLVDAYGILPATRLAMTLALLSLPCSVDALLIDAE 122

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +P  +     ++++GD+ SLSIAAASIIAKVTRDRLM+ A + YP YGF  H GY T  
Sbjct: 123 RLP-GIRVPQESLVRGDARSLSIAAASIIAKVTRDRLMQTADRCYPQYGFALHKGYGTPV 181

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H++ +++ GPS  HR TF+P+  L
Sbjct: 182 HRRALRQYGPSPFHRRTFQPVLEL 205


>gi|310831397|ref|YP_003970040.1| putative ribonuclease HII [Cafeteria roenbergensis virus BV-PW1]
 gi|309386581|gb|ADO67441.1| putative ribonuclease HII [Cafeteria roenbergensis virus BV-PW1]
          Length = 202

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 104/192 (54%), Gaps = 14/192 (7%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITSSAIISISS 85
           G+DE GRG   GPV   A++  P N+  P+ + DSKK++ KKR  LY  I    +  I  
Sbjct: 12  GLDEAGRGCWWGPVTAGAVMW-PENLTHPY-LTDSKKLTEKKRNVLYTWILEKCLCGIGE 69

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQ-------VIPRSALIDGRSIPE-DLPCQAFAVI 137
           A+   ID   I +AT  A+  A++NL+       +   + +IDG +  E D P    +++
Sbjct: 70  ATSYEIDTIGILEATKLAMNRAIKNLEKNITMSSIKINNLIIDGINWKEKDFPYPITSIV 129

Query: 138 KGDSISLSIAAASIIAKVTRDRLM--RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           KGD    SIAAAS++AKV RD     +     +  Y  D H GY T  H++++ + GP+ 
Sbjct: 130 KGDGKYYSIAAASVLAKVYRDNYCYKKALEDNFKTYLLDKHKGYGTKIHKEMLDKYGPTE 189

Query: 196 IHRLTFRPLRNL 207
            HR +F+P+ N+
Sbjct: 190 EHRHSFKPICNM 201


>gi|116072124|ref|ZP_01469392.1| Ribonuclease H [Synechococcus sp. BL107]
 gi|116065747|gb|EAU71505.1| Ribonuclease H [Synechococcus sp. BL107]
          Length = 199

 Score =  108 bits (271), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/192 (39%), Positives = 110/192 (57%), Gaps = 17/192 (8%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII 81
           VAG+DEVGRG L GPV  AA++LD          G+ DSKK+S K+R  L   I    + 
Sbjct: 13  VAGVDEVGRGCLFGPVFAAAVVLDQVAEQRLWQAGLTDSKKLSAKRRGSLVPLIEQHCLT 72

Query: 82  S-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA----- 135
           S +  AS   ID   I +AT  A+  A++ L+  P   L+DG     +LP + ++     
Sbjct: 73  SGLGQASAHEIDAVGIRRATERAMLRALQKLEHSPNVVLVDG-----NLPLRLWSGPQKT 127

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           ++ GDS S +IAAAS++AK +RD L+R    ++P YG + H GY TA H++ +   GP+ 
Sbjct: 128 LVGGDSRSAAIAAASVLAKESRDALIRRLSNRFPGYGLERHAGYGTALHREALLALGPTS 187

Query: 196 IHRLTFRPLRNL 207
           +HR +F  LR L
Sbjct: 188 MHRRSF--LRRL 197


>gi|317125409|ref|YP_004099521.1| ribonuclease H [Intrasporangium calvum DSM 43043]
 gi|315589497|gb|ADU48794.1| Ribonuclease H [Intrasporangium calvum DSM 43043]
          Length = 264

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 112/221 (50%), Gaps = 19/221 (8%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGIN 58
           M   +  ++P   +E  ++      +AG+DEVGRGALAGPV V  +++D    + P G+ 
Sbjct: 1   MAVRTPSKKPSLRVERQLQRAGHRLLAGMDEVGRGALAGPVSVGVVVIDETVRSAPTGVK 60

Query: 59  DSKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117
           DSK ++ + R  L  +I   A+  S+  AS   ID   I  A   A   A+  L+V+P  
Sbjct: 61  DSKLLTERARRGLVPRIQRWAVAYSVGHASPAEIDDIGIMAALRLAGLRALATLEVVPDL 120

Query: 118 ALIDGR----SIPEDLPCQAFA------------VIKGDSISLSIAAASIIAKVTRDRLM 161
            ++DG     + P ++   AFA            +IK D    S+AAAS+IAKV RD LM
Sbjct: 121 VILDGNHDWLTAPYEVGLLAFADAAGPTTPPVTTMIKADLKCSSVAAASVIAKVERDELM 180

Query: 162 RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
                ++P YG+  + GY   +H   +   GP  +HR ++R
Sbjct: 181 VRLGAEHPAYGWTLNKGYSAPEHIDALARIGPCELHRRSWR 221


>gi|116075704|ref|ZP_01472963.1| Ribonuclease HII and HIII [Synechococcus sp. RS9916]
 gi|116067019|gb|EAU72774.1| Ribonuclease HII and HIII [Synechococcus sp. RS9916]
          Length = 193

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/180 (37%), Positives = 100/180 (55%), Gaps = 5/180 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA-II 81
           AG+DEVGRG   GPV  AA++L           G+ DSK ++ + R  L   I  +A   
Sbjct: 6   AGVDEVGRGCWFGPVFAAAVVLSEAAASALTAEGLTDSKALTARHRARLVPLIEDAAEAW 65

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           ++  AS + ID H I +AT  A+  A++ L   P   L+DG       P     +++GDS
Sbjct: 66  ALGQASAREIDHHGIRRATELAMLRALQRLPQQPALVLVDGVLPLRLWPHSQQTIVRGDS 125

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
              SIAAAS++AK +RD L+R   +++P YG + H GY TA H+Q +   GP+ +HR +F
Sbjct: 126 SKASIAAASVLAKESRDALIRRLAERFPGYGLERHAGYGTAVHRQALLAHGPTAMHRCSF 185


>gi|19553236|ref|NP_601238.1| ribonuclease HII [Corynebacterium glutamicum ATCC 13032]
 gi|62390872|ref|YP_226274.1| ribonuclease HII [Corynebacterium glutamicum ATCC 13032]
 gi|41326211|emb|CAF20373.1| PROBABLE RIBONUCLEASE HII PROTEIN [Corynebacterium glutamicum ATCC
           13032]
          Length = 222

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 94/191 (49%), Gaps = 4/191 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREEL 71
            E  +    + PVAG+DE GRGA  GP+ +AA IL   P      + DSKK+S   RE+L
Sbjct: 10  FEVTLSRNGLGPVAGVDEAGRGACCGPISIAACILPDKPIQELAALTDSKKLSASTREKL 69

Query: 72  YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
              I   A+  S+   S Q ID+  I  A +  +  AV  L   P   L D   +P    
Sbjct: 70  MPLIKKHALAWSVIVISAQDIDRFGIQHANISGMRRAVAALGTQPGYVLTDAMKVP-GFT 128

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +I GD+ +  IAAAS++AK TRD +M      YP YG + H GY T  H   ++ 
Sbjct: 129 VPYLPIIGGDASARCIAAASVLAKQTRDDIMTDMANDYPHYGLEIHKGYSTKIHMDAVRH 188

Query: 191 KGPSCIHRLTF 201
            G S  HR ++
Sbjct: 189 HGASPEHRYSY 199


>gi|159036847|ref|YP_001536100.1| ribonuclease HII [Salinispora arenicola CNS-205]
 gi|189043653|sp|A8M684|RNH2_SALAI RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157915682|gb|ABV97109.1| Ribonuclease H [Salinispora arenicola CNS-205]
          Length = 269

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/196 (36%), Positives = 107/196 (54%), Gaps = 10/196 (5%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKRE 69
           + LE  ++ +    VAG DE GRGA AGP+V AA +L         G+ DSK ++   RE
Sbjct: 16  YALERALQRRGFRHVAGADEAGRGACAGPLVAAAAVLPEGRRGEIDGLADSKLLTPASRE 75

Query: 70  ELYEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
            +Y ++ + A    ++ I +A    +D   +H   L A+  A+ +L   P   L DG  +
Sbjct: 76  RVYAEVVARALAYAVVVIPAAE---VDLRGLHVCNLAAMRRALASLATAPEYVLTDGFGV 132

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
            + L     AV KGD ++  +AAAS++AKVTRDR+M      +P YGF  H GY TA+H 
Sbjct: 133 -DGLDVPGLAVWKGDRVAACVAAASVLAKVTRDRIMVELDTTFPGYGFAEHKGYITAEHS 191

Query: 186 QVIKEKGPSCIHRLTF 201
             ++E+GP   HR ++
Sbjct: 192 AALRERGPCPEHRFSY 207


>gi|325963707|ref|YP_004241613.1| ribonuclease HII [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469794|gb|ADX73479.1| ribonuclease HII [Arthrobacter phenanthrenivorans Sphe3]
          Length = 248

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 113/215 (52%), Gaps = 22/215 (10%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD-PNNIPF-GINDSKKISHKK 67
           P    E   + + +  +AG+DEVGRGALAGPV V   ++D  +  P  G+ DSK ++  +
Sbjct: 8   PTLRHERTFKAQGIRYLAGVDEVGRGALAGPVSVGIAVVDLEHQKPLAGVRDSKLLTPSE 67

Query: 68  REELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGR 123
           RE L   +   ++ S +  AS Q ID   I  A   A   A +++    + P + L+DG 
Sbjct: 68  RERLEPLVRRWSVASAVGHASAQEIDSIGIIAALRLAGTRAWQDILAAGIRPEAVLLDGS 127

Query: 124 S---IPEDLP-----------CQA--FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                P   P           C A     +K D   LS+AAAS+IAKV RDR MR  H +
Sbjct: 128 HNWLSPAGQPSLFDEPVFEASCDAPVHTKVKADMQCLSVAAASVIAKVERDRTMRELHAE 187

Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           +PD+G+D + GY T  H+ V++  GP+  HR+++R
Sbjct: 188 FPDFGWDINKGYATVLHRDVLRAAGPTPYHRVSWR 222


>gi|145352696|ref|XP_001420674.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580909|gb|ABO98967.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 189

 Score =  108 bits (269), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/189 (40%), Positives = 115/189 (60%), Gaps = 8/189 (4%)

Query: 20  EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           EK  W      V G+DE GRG LAGPVV AA  +  + +   +NDSK+++ + REE++E+
Sbjct: 2   EKKHWEAGRHRVVGVDEAGRGPLAGPVVAAACFVPKDCVVDCVNDSKQLTEEGREEIFEE 61

Query: 75  ITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           + ++  I   +       ID+ NI + T++A++ +  ++  +    LIDG  +P+ L  +
Sbjct: 62  LMANKDIEYGVCVIDQDRIDEINILECTMEAMHRSAADVPNVD-WVLIDGNRVPKPLEGK 120

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
           A A++KGD+ +++IAAASIIAKVTRDR+M    K++P YGF  H GY T  H   I + G
Sbjct: 121 AEAIVKGDAKNVAIAAASIIAKVTRDRMMLEIDKEFPMYGFKDHKGYGTKAHMAAIDKHG 180

Query: 193 PSCIHRLTF 201
           P   HR TF
Sbjct: 181 PCVYHRKTF 189


>gi|116671022|ref|YP_831955.1| ribonuclease HII [Arthrobacter sp. FB24]
 gi|189043563|sp|A0JXT5|RNH2_ARTS2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|116611131|gb|ABK03855.1| Ribonuclease H [Arthrobacter sp. FB24]
          Length = 221

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/201 (36%), Positives = 108/201 (53%), Gaps = 22/201 (10%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELYEKITSSAIIS- 82
           +AGIDEVGRGA+AGPV V   ++D +   +   + DSK +    RE L   + + ++ S 
Sbjct: 21  LAGIDEVGRGAIAGPVTVGITVVDLSRPVLLDDVRDSKLLKESDRERLEPLVRNWSVASA 80

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGR----------SIPEDL 129
           +  AS   ID   I  A   A   A   +    V P   L+DG           S+ +D 
Sbjct: 81  VGHASAGEIDALGIIAALRTAGTRAWLQILAAGVTPDVVLLDGSHNWLSPETQASLFDDA 140

Query: 130 P----CQA--FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           P    C A    ++K D   LS+AAASI+AKV RDR+MR  H +YP +G+D + GY TA 
Sbjct: 141 PAGPGCDAPVHTLVKADMQCLSVAAASILAKVERDRIMRSLHGEYPAFGWDENKGYGTAS 200

Query: 184 HQQVIKEKGPSCIHRLTFRPL 204
           H++ ++  GPS  HR++++ L
Sbjct: 201 HKEALRAAGPSPYHRVSWQIL 221


>gi|289644815|ref|ZP_06476868.1| Ribonuclease H [Frankia symbiont of Datisca glomerata]
 gi|289505371|gb|EFD26417.1| Ribonuclease H [Frankia symbiont of Datisca glomerata]
          Length = 208

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 108/182 (59%), Gaps = 10/182 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSA---- 79
           +AG+DE GRGA AGP+VVAA++L  N       + DSK++S + RE+++++I S A    
Sbjct: 1   MAGVDEAGRGACAGPLVVAAVVLPANGSRRLVDLADSKRLSPRLREQVFDEILSVAQAWA 60

Query: 80  IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
            + I S+    ID   +H A +  +  AV  L   P   L DG ++P  L   + AV+KG
Sbjct: 61  TVVIQSSE---IDACGVHVANIAGMRRAVARLGRRPGYVLTDGFAVP-GLGVASTAVLKG 116

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D +   +AAAS++AKVTRDR+M+  H ++P+Y F  H GY TA H   +   GP   HR+
Sbjct: 117 DQVVACVAAASVVAKVTRDRIMKDLHHRHPEYDFAQHKGYVTAGHAAALSAYGPCEQHRM 176

Query: 200 TF 201
           ++
Sbjct: 177 SY 178


>gi|78776481|ref|YP_392796.1| ribonuclease HII [Sulfurimonas denitrificans DSM 1251]
 gi|78497021|gb|ABB43561.1| RNase HII [Sulfurimonas denitrificans DSM 1251]
          Length = 188

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/179 (40%), Positives = 101/179 (56%), Gaps = 10/179 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           + GIDE GRG +AG +VVA  IL  N+   G+NDSKK++ KKRE LYE I  ++   I  
Sbjct: 5   LCGIDEAGRGPIAGDLVVAGCIL--NSHVDGLNDSKKLNEKKREALYEIIIKNSSYHIVK 62

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI--PEDLPCQAFAVIKGDSIS 143
            S + ID + I      A+   ++NL    +  L DG +     +LP     +IK D   
Sbjct: 63  FSAKEIDDNGISICMKKALLEIMKNLTC--KEYLFDGNTNFGINNLP----TMIKADGKI 116

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             ++AASI+AKVT DR +    KKYP Y F  H GY TA H ++IK+ G   IHR +++
Sbjct: 117 PEVSAASILAKVTHDRNIINDAKKYPQYQFQKHKGYGTALHVEMIKKYGYCEIHRKSYK 175


>gi|255325247|ref|ZP_05366353.1| ribonuclease HII [Corynebacterium tuberculostearicum SK141]
 gi|255297812|gb|EET77123.1| ribonuclease HII [Corynebacterium tuberculostearicum SK141]
          Length = 213

 Score =  107 bits (268), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 71/195 (36%), Positives = 101/195 (51%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72
           E  + +  + PVAG DE GRGA  GP+ +AA ++    I     + DSKK++ K+RE+L+
Sbjct: 11  EVALSKAGLGPVAGADEAGRGACCGPITIAACVMPDRPIKELAALTDSKKLTPKQREKLF 70

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   A+  S+       IDK  I  A +  +  AV  L+  P   L D   IP  L  
Sbjct: 71  PLIKDKAVDWSVVHIGAGDIDKRGIQHANISGMRRAVARLETRPGYVLTDALFIP-GLTQ 129

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +I GD+ +  IAAAS++AKV+RD LM     +YP YG  SH GY T  H+  I   
Sbjct: 130 PHLPIIGGDAAARCIAAASVLAKVSRDHLMHELDARYPGYGLASHKGYGTKAHEAAIAAL 189

Query: 192 GPSCIHRLTFRPLRN 206
           G    HR+++  +R 
Sbjct: 190 GACPEHRMSYENVRR 204


>gi|291288314|ref|YP_003505130.1| Ribonuclease H [Denitrovibrio acetiphilus DSM 12809]
 gi|290885474|gb|ADD69174.1| Ribonuclease H [Denitrovibrio acetiphilus DSM 12809]
          Length = 184

 Score =  107 bits (268), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 104/182 (57%), Gaps = 12/182 (6%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + GIDEVGRG LAGPVV  A++L  N     + DSKKIS KKR+ +   + ++AI   I 
Sbjct: 3   IVGIDEVGRGCLAGPVVAGAVLLPENFSDERLVDSKKISEKKRKIMDGVVRANAIAFGIG 62

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDLPCQAFAVIKG 139
           + S++ ID++ I   T  A+  A+E +     +VI  +  ++G  +P + P       K 
Sbjct: 63  AVSNEDIDRYGIVPCTKKAMMLALEQISVSYDKVIVDAVKLEGVKVPLEHP------FKA 116

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           +     +AAASIIAKV RD LM   H  +PDYG+ S+ GY    H + IKE G + +HR 
Sbjct: 117 EDKFQCVAAASIIAKVYRDALMTKLHINHPDYGWYSNKGYGAKVHIEKIKEIGLTPLHRR 176

Query: 200 TF 201
           +F
Sbjct: 177 SF 178


>gi|293363996|ref|ZP_06610732.1| ribonuclease HII [Mycoplasma alligatoris A21JP2]
 gi|292552486|gb|EFF41260.1| ribonuclease HII [Mycoplasma alligatoris A21JP2]
          Length = 199

 Score =  107 bits (268), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 108/185 (58%), Gaps = 4/185 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           + G+DEVGR +LAGP+VVA ++   N     I DSK+++  +R+  Y++I   AI     
Sbjct: 15  ILGLDEVGRDSLAGPIVVACVMFPKNYHNPLIKDSKELTKDQRDIAYKEIIKDAITYKYI 74

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI-DGRSIPEDLPCQAFAVIKGDSIS 143
                ++D HN  K+++  +   +++ ++     +I D   +  +   Q+ A+  GD  S
Sbjct: 75  FLDKDFVDLHNPKKSSIIGMEKLIDSYELDQIDYVITDYEKV--NTKFQSRAIKFGDKYS 132

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           ++IAAASI+AKV RD  M     +YP Y FD + GY T  H + +K+ GPS IHR++++P
Sbjct: 133 ITIAAASIVAKVIRDEYMDKMSLEYPIYAFDKNKGYGTKVHLEALKKYGPSPIHRISYKP 192

Query: 204 LRNLS 208
           +++ S
Sbjct: 193 VKDAS 197


>gi|311739721|ref|ZP_07713556.1| ribonuclease HII [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305537|gb|EFQ81605.1| ribonuclease HII [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 213

 Score =  107 bits (268), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 71/195 (36%), Positives = 102/195 (52%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72
           E  + +  + PVAG+DE GRGA  GP+ +AA ++    I     + DSKK++ K+RE+L+
Sbjct: 11  EVALSKAGLGPVAGVDEAGRGACCGPITIAACVMPDRPIKELAQLTDSKKLTPKQREKLF 70

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   A+  S+       IDK  I  A +  +  AV  L+  P   L D   IP  L  
Sbjct: 71  PLIKDKAVDWSVVHIGAGDIDKRGIQHANISGMRRAVARLEARPGYVLTDALFIP-GLTQ 129

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +I GD+ +  IAAAS++AKV+RD LM     +YP YG  SH GY T  H+  I   
Sbjct: 130 PHLPIIGGDAAARCIAAASVLAKVSRDHLMHELDVRYPGYGLASHKGYGTKAHEAAIAAL 189

Query: 192 GPSCIHRLTFRPLRN 206
           G    HR+++  +R 
Sbjct: 190 GACPEHRMSYENVRR 204


>gi|210633137|ref|ZP_03297704.1| hypothetical protein COLSTE_01617 [Collinsella stercoris DSM 13279]
 gi|210159291|gb|EEA90262.1| hypothetical protein COLSTE_01617 [Collinsella stercoris DSM 13279]
          Length = 262

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 98/172 (56%), Gaps = 9/172 (5%)

Query: 34  RGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSASHQYID 92
           RG++AGP+ V A+ L      +GINDSK++S  KRE L  +I   A  + I     + ID
Sbjct: 85  RGSVAGPLTVCAVCLPDEPRLWGINDSKQLSPAKREILAVRIAECARAVGICHIPPERID 144

Query: 93  KHNIHKATLDAIYHAVENLQVIPRSALIDGR---SIPEDLPCQAFAVIKGDSISLSIAAA 149
           +  + +A  +A+  AV +  + P   L+DG    ++P +       V+KGD+    IAAA
Sbjct: 145 EIGMARALREAVAGAVADTGLQPDCVLMDGNPLGAVPHERD-----VVKGDATVACIAAA 199

Query: 150 SIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SI+AKVTRD LM     +YP Y      GY +A+H Q I+E+G S IHR++F
Sbjct: 200 SIVAKVTRDELMVEYDAEYPGYHLAQSKGYASAEHIQAIRERGLSPIHRVSF 251


>gi|289426375|ref|ZP_06428118.1| ribonuclease HII [Propionibacterium acnes SK187]
 gi|289153103|gb|EFD01821.1| ribonuclease HII [Propionibacterium acnes SK187]
          Length = 188

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/173 (39%), Positives = 89/173 (51%), Gaps = 4/173 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72
           E  +    + PVAG DE GRGA AGP+V AA+ILD        G+ DSK +S  KRE L+
Sbjct: 17  ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 76

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   A+ +S         D+  + +A +  +  AV  L V P   L DG  +   L  
Sbjct: 77  NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-HGLTV 135

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
               + KGDS+   +AAASI+AKV RDR+M     + P Y F  H GY TA H
Sbjct: 136 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALH 188


>gi|226356414|ref|YP_002786154.1| ribonuclease HII [Deinococcus deserti VCD115]
 gi|226318404|gb|ACO46400.1| putative Ribonuclease H (RNase HII) [Deinococcus deserti VCD115]
          Length = 218

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 107/199 (53%), Gaps = 3/199 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P +  E     +  + VAG+DE GRGA AGPV VAA+IL      +   DSK++S  +RE
Sbjct: 8   PDWAYEREHWRRGYFRVAGVDEAGRGAWAGPVTVAAVILPGLAQEYPFRDSKQLSASQRE 67

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
              +++   A+  ++  A  + I++ NI  AT  A   A+  L   P++ + D   +   
Sbjct: 68  ACAQEVRRVALSYAVEHAWPEEIERLNILGATHAAAARALARLDPAPQALITDYLKLRTS 127

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LP  A    + D++S ++AAAS++AK  RD LM     ++P YGF  H GY    H+  +
Sbjct: 128 LPLSA--PPRADALSYTVAAASLLAKTERDHLMLELDLQHPGYGFAGHKGYGAPAHRAAL 185

Query: 189 KEKGPSCIHRLTFRPLRNL 207
            E G S +HR ++ P+R L
Sbjct: 186 AELGVSPVHRRSYAPIRAL 204


>gi|39932425|sp|Q8NNZ4|RNH2_CORGL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|21324803|dbj|BAB99426.1| Ribonuclease HII [Corynebacterium glutamicum ATCC 13032]
          Length = 209

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/187 (36%), Positives = 93/187 (49%), Gaps = 4/187 (2%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREELYEKI 75
           +    + PVAG+DE GRGA  GP+ +AA IL   P      + DSKK+S   RE+L   I
Sbjct: 1   MSRNGLGPVAGVDEAGRGACCGPISIAACILPDKPIQELAALTDSKKLSASTREKLMPLI 60

Query: 76  TSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
              A+  S+   S Q ID+  I  A +  +  AV  L   P   L D   +P        
Sbjct: 61  KKHALAWSVIVISAQDIDRFGIQHANISGMRRAVAALGTQPGYVLTDAMKVP-GFTVPYL 119

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            +I GD+ +  IAAAS++AK TRD +M      YP YG + H GY T  H   ++  G S
Sbjct: 120 PIIGGDASARCIAAASVLAKQTRDDIMTDMANDYPHYGLEIHKGYSTKIHMDAVRHHGAS 179

Query: 195 CIHRLTF 201
             HR ++
Sbjct: 180 PEHRYSY 186


>gi|268680590|ref|YP_003305021.1| ribonuclease H [Sulfurospirillum deleyianum DSM 6946]
 gi|268618621|gb|ACZ12986.1| Ribonuclease H [Sulfurospirillum deleyianum DSM 6946]
          Length = 182

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 106/192 (55%), Gaps = 25/192 (13%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           + GIDE GRG LAGP+VVA  +L +P     G+ DSK++S K+RE L+E++ ++A   I 
Sbjct: 2   LCGIDEAGRGCLAGPLVVAGAVLKEPVK---GLADSKQLSEKQREILFERLQNAAEFKIV 58

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQV--IPRSALIDGRSIPEDLPCQAFAV------ 136
              H+ +D   +       + +A+E ++        L+DG           F V      
Sbjct: 59  FCDHEMVDTKGLSAC----LKYAIETIKAHFCEHEILMDGNC--------TFGVSGISTM 106

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           +K D+    ++AASI+AKV+RDR M      YP+Y F+ H GY +A H ++I++ G   I
Sbjct: 107 VKADAKVAEVSAASILAKVSRDRYMCDIAPSYPEYAFEKHKGYGSALHVKMIQQFGYCDI 166

Query: 197 HRLTFRPLRNLS 208
           HR +F+ L+ LS
Sbjct: 167 HRKSFK-LKALS 177


>gi|154174298|ref|YP_001409163.1| ribonuclease HII [Campylobacter curvus 525.92]
 gi|189043573|sp|A7H121|RNH2_CAMC5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|112802182|gb|EAT99526.1| ribonuclease HII [Campylobacter curvus 525.92]
          Length = 183

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/176 (37%), Positives = 99/176 (56%), Gaps = 7/176 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           V GIDE GRGALAGP+ VAA +L+      G+NDSKK++ K+R+EL+  IT ++   I  
Sbjct: 3   VCGIDEAGRGALAGPMAVAACVLNAG--ISGLNDSKKLTPKRRKELFHLITQNSRYLIVY 60

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S++ ID+  + +    A+   +  L       L DG    ++       ++K D+    
Sbjct: 61  FSNEQIDELGLSECLRRAL--NLFKLYFAGCELLYDGN---QNYGTGVQTMVKADAKVEE 115

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           + AASI+AKV+RD LM    K YP++G+ SH GY T  H + I + G + I R +F
Sbjct: 116 VGAASILAKVSRDELMCAWDKIYPNFGYKSHKGYGTKAHLEAITKYGQNEISRKSF 171


>gi|269215611|ref|ZP_06159465.1| ribonuclease HII [Slackia exigua ATCC 700122]
 gi|269131098|gb|EEZ62173.1| ribonuclease HII [Slackia exigua ATCC 700122]
          Length = 259

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/182 (37%), Positives = 101/182 (55%), Gaps = 14/182 (7%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87
           G+DEVGRG LAGP+ V A++L       GI+DSKK++   REEL   I ++A+    +  
Sbjct: 73  GLDEVGRGPLAGPLAVGAVVLPDEPRIEGIDDSKKLAPSAREELSAVIRATAV----AWD 128

Query: 88  HQYIDKHNIH--------KATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
            ++I  H+I         KA       A+E   V   + L+DG   P  +  +   V+KG
Sbjct: 129 VEFIGPHDIDELGISACLKAAFSRAVAAIECAGVRIDAILLDGN--PLHIDDREVNVVKG 186

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D+   +I+ ASIIAKV RD  MR     YP YGF+ + GY +A+H + IK+ G + +HR 
Sbjct: 187 DARCAAISCASIIAKVERDAYMRSQAVAYPAYGFEENKGYGSAQHIEAIKKHGLTPLHRA 246

Query: 200 TF 201
           +F
Sbjct: 247 SF 248


>gi|308810146|ref|XP_003082382.1| putative ribonuclease HII (ISS) [Ostreococcus tauri]
 gi|116060850|emb|CAL57328.1| putative ribonuclease HII (ISS) [Ostreococcus tauri]
          Length = 299

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/211 (37%), Positives = 121/211 (57%), Gaps = 28/211 (13%)

Query: 7   PERPHFELEAMVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61
           P+R H        EK  W      V G+DE GRG LAGPVV AA  +  + +   +NDSK
Sbjct: 98  PDRSH--------EKKHWDAGRHRVVGVDEAGRGPLAGPVVAAACFVPKDCVVDCVNDSK 149

Query: 62  KISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHA---VENLQVIPRSA 118
           +++ + REE++E++ ++  I             NI + T++A+  +   V N+  +    
Sbjct: 150 QLTEEGREEIFEELMANKEIEYRGI--------NILECTMEAMTRSALDVPNVDWV---- 197

Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
           LIDG  +P+ L  +A A++KGD+ +++IAAASIIAKVTRDR+M    K++P YGF  H G
Sbjct: 198 LIDGNRVPKPLEGKAEAIVKGDAKNVAIAAASIIAKVTRDRMMVEIDKEFPMYGFKDHKG 257

Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209
           Y T  H   I + GP   HR TF P++++ +
Sbjct: 258 YGTKAHMAAIDKYGPCVYHRKTFAPIKHMDL 288


>gi|78185595|ref|YP_378029.1| ribonuclease HII [Synechococcus sp. CC9902]
 gi|97189417|sp|Q3AW47|RNH2_SYNS9 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|78169889|gb|ABB26986.1| RNase HII [Synechococcus sp. CC9902]
          Length = 199

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/192 (40%), Positives = 106/192 (55%), Gaps = 17/192 (8%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII 81
           VAG+DEVGRG L GPV  AA++LD          G+ DSKK+S K+R  L   I    + 
Sbjct: 13  VAGVDEVGRGCLFGPVFAAAVVLDEVAEQRLWQAGLTDSKKLSAKRRAGLVPLIEQHCLT 72

Query: 82  -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA----- 135
             +  AS   ID   I  AT  A+  A++ L   P   L+DG     +LP + ++     
Sbjct: 73  RGLGQASAHEIDAVGIRGATERAMLRALQKLAHPPNVVLVDG-----NLPLRLWSGSQQT 127

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           V+ GDS S +IAAAS++AK  RD L+R    ++P YG + H GY TA HQ+ +   GP+ 
Sbjct: 128 VVGGDSRSAAIAAASVLAKEARDALIRRLSDQFPGYGLERHAGYGTALHQKALLALGPTS 187

Query: 196 IHRLTFRPLRNL 207
           +HR +F  LR L
Sbjct: 188 LHRRSF--LRRL 197


>gi|302335674|ref|YP_003800881.1| RNase HII [Olsenella uli DSM 7084]
 gi|301319514|gb|ADK68001.1| RNase HII [Olsenella uli DSM 7084]
          Length = 259

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/177 (38%), Positives = 95/177 (53%), Gaps = 3/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + G+DEVGRGALAGP+   A+ L    I +G+NDSK++S  +R  L   I   AI I ++
Sbjct: 74  IVGVDEVGRGALAGPLTACAVALPGEPIIWGLNDSKQLSPARRGALGATIAEHAIAIGVA 133

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
                 ID   +  A   A+  A+ +  V     LIDG   P  +  Q  A++KGD+   
Sbjct: 134 HVEPASIDAVGMSVALRMAMGQAIADAGVDADCVLIDGN--PVHVHPQERALVKGDARVA 191

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            IAAASI+AKVTRD LM     +YP Y      GY +  H   I+  G + IHR++F
Sbjct: 192 CIAAASIVAKVTRDSLMVAYDSEYPGYHLAECKGYGSPAHIDAIRRLGLTPIHRVSF 248


>gi|294102509|ref|YP_003554367.1| Ribonuclease H [Aminobacterium colombiense DSM 12261]
 gi|293617489|gb|ADE57643.1| Ribonuclease H [Aminobacterium colombiense DSM 12261]
          Length = 195

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/188 (41%), Positives = 111/188 (59%), Gaps = 18/188 (9%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI- 80
           +AG+DE GRG LAGPVV AA++L P+ +      G+NDSKK++  KRE++++ + S  + 
Sbjct: 6   IAGVDEAGRGPLAGPVVAAAVVLTPSQLDALAALGLNDSKKLTPLKREKIFKAMVSLGVA 65

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-------RSIPEDLPCQA 133
               +AS + ID+ NI +ATL A+  +V  L  +    ++DG       RS P+      
Sbjct: 66  WRAQAASPRRIDQMNILQATLWAMSRSVNKLPHVFEEVIVDGSVLIPGLRSYPQK----- 120

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            A+ KGDS+   +AAAS++AKV RDR M      YP Y F  H GYPT  H++ I E G 
Sbjct: 121 -AIPKGDSLVPEVAAASVVAKVLRDRAMVALDMAYPQYNFAKHKGYPTEDHRRRITEFGL 179

Query: 194 SCIHRLTF 201
           S IHR +F
Sbjct: 180 SPIHRRSF 187


>gi|297202855|ref|ZP_06920252.1| ribonuclease HII [Streptomyces sviceus ATCC 29083]
 gi|197717340|gb|EDY61374.1| ribonuclease HII [Streptomyces sviceus ATCC 29083]
          Length = 233

 Score =  105 bits (262), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/183 (38%), Positives = 107/183 (58%), Gaps = 1/183 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84
           +AG+DEVGRGA AGPV V A +      P G+ DSK +S K+R EL E++ T     ++ 
Sbjct: 23  IAGVDEVGRGAWAGPVTVCAAVTGLRRPPQGLTDSKLLSVKRRTELAEELRTWVTSYALG 82

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID   +  A   A   A+E L V P + ++DG+      P +   VIKGD   +
Sbjct: 83  HASPEEIDHMGMTAALRIAAVRALEALPVRPDAVILDGKHDYLGTPWKVRTVIKGDQSCV 142

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           ++AAAS+IAKV RD++M      + D+GF ++ GYP+  H+  ++ +GP+  HRL++  L
Sbjct: 143 AVAAASVIAKVQRDKMMAELGIDHADFGFAANAGYPSPVHKAALEVRGPTPYHRLSWAYL 202

Query: 205 RNL 207
             L
Sbjct: 203 DAL 205


>gi|224372133|ref|YP_002606505.1| ribonuclease HII [Nautilia profundicola AmH]
 gi|223589086|gb|ACM92822.1| ribonuclease HII [Nautilia profundicola AmH]
          Length = 196

 Score =  105 bits (262), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/188 (37%), Positives = 98/188 (52%), Gaps = 16/188 (8%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN----------NIPFGINDSKKISHKKREELYEKI 75
           + GIDE GRG +AGP+VVA  I              N    +NDSKK++ KKREEL+E I
Sbjct: 5   ICGIDEAGRGPIAGPLVVAGCIFKNEKLKVKSEKWENFLQKLNDSKKLNAKKREELFEII 64

Query: 76  TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF- 134
             +    I    ++ ID+  +  A   A+    + L+      L DG S   +   +   
Sbjct: 65  QETCEYHIVFVDNKTIDEKGLSFAINYALNEIKKTLK--ANKYLFDGNS---NFGVKGIE 119

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            +IKGD     I+AASI+AKV+RD+ M     KYP Y F  H GY T +H + IK+ G S
Sbjct: 120 TLIKGDGKIKQISAASILAKVSRDKYMLEIADKYPMYNFKKHKGYITKEHIEEIKKNGFS 179

Query: 195 CIHRLTFR 202
            IHR ++R
Sbjct: 180 DIHRKSYR 187


>gi|160947174|ref|ZP_02094341.1| hypothetical protein PEPMIC_01107 [Parvimonas micra ATCC 33270]
 gi|158446308|gb|EDP23303.1| hypothetical protein PEPMIC_01107 [Parvimonas micra ATCC 33270]
          Length = 210

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/196 (38%), Positives = 112/196 (57%), Gaps = 11/196 (5%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           ELE + ++ N+  + G+DEVGRG LAGPVV  AII+  ++   G+ DSKK+S KKR  LY
Sbjct: 6   ELENIYKKYNL--IIGVDEVGRGCLAGPVVSCAIIMKKDSKIEGVTDSKKLSKKKRLALY 63

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA------LIDGRSI 125
           +KI    +   I    +  ID+ NI +A+  A+  A+ N++ +  +       + D   +
Sbjct: 64  DKILEECVGYGIGIVDNVKIDEINIKQASRFAMKIAISNIKDLDGNKVSGDFLITDAEKV 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
             D+P     +I GD +S  ++ ASIIAK  RD +     KKYP+Y F  +VGY T  H 
Sbjct: 124 DVDIP--QINLIHGDELSYVVSCASIIAKEYRDSMFVEYEKKYPNYNFIKNVGYGTKAHY 181

Query: 186 QVIKEKGPSCIHRLTF 201
           + I E G + IHR+TF
Sbjct: 182 KGIDEFGVTPIHRVTF 197


>gi|327404332|ref|YP_004345170.1| RNase HII [Fluviicola taffensis DSM 16823]
 gi|327319840|gb|AEA44332.1| RNase HII [Fluviicola taffensis DSM 16823]
          Length = 202

 Score =  105 bits (261), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/184 (40%), Positives = 99/184 (53%), Gaps = 9/184 (4%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPVV A++IL        +NDSK++S K R  L   I   A+  S+  
Sbjct: 14  AGCDEAGRGCLAGPVVCASVILPKGFSHPLLNDSKQLSEKSRNLLRPIIEQEALAFSVQF 73

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS--IPEDLPCQAFAVIKGDSIS 143
                I   NI KA+L  ++ A   L++ P   LIDG    +  ++P  AF  IKGD   
Sbjct: 74  LQPDEIVVLNILKASLTGMHRAAMALKIRPELLLIDGNKTLLSNEIPSIAF--IKGDGKY 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SIAAASI+AK  RD  M   H+ +  Y +  + GYPT  H++ I+  G +CIH    RP
Sbjct: 132 KSIAAASILAKTYRDEYMEKLHEDFTHYDWKINKGYPTKAHRKAIEIHG-ACIHH---RP 187

Query: 204 LRNL 207
             NL
Sbjct: 188 GFNL 191


>gi|148259652|ref|YP_001233779.1| ribonuclease H [Acidiphilium cryptum JF-5]
 gi|166225163|sp|A5FW78|RNH2_ACICJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|146401333|gb|ABQ29860.1| RNase HII [Acidiphilium cryptum JF-5]
          Length = 199

 Score =  104 bits (260), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 87/183 (47%), Positives = 109/183 (59%), Gaps = 5/183 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISHKKREE-LYEKITSSAII 81
           VAG+DEVGRG LAGPVV AA IL    P  I   I+DSK++S  +RE  L   I S A I
Sbjct: 14  VAGVDEVGRGPLAGPVVAAAAILPADLPPEIAALIDDSKRLSPAQREAALAALIESGAAI 73

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           S ++AS   I + NI +A+L A+  AV  L V P   L+DG+  P DLP     V+ GD 
Sbjct: 74  SAAAASVAEIARLNILQASLLAMRRAVARLAVRPDHVLVDGQVAP-DLPMPCTPVVGGDG 132

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +SLSIAAASI AK+ RDR M    ++YP YG+  + GY T  H+  I   G +  HR  F
Sbjct: 133 LSLSIAAASIAAKLVRDRAMSRLDRRYPGYGWARNSGYGTKTHRDAILGLGITPHHRRGF 192

Query: 202 RPL 204
            PL
Sbjct: 193 GPL 195


>gi|311744109|ref|ZP_07717915.1| ribonuclease HII [Aeromicrobium marinum DSM 15272]
 gi|311313239|gb|EFQ83150.1| ribonuclease HII [Aeromicrobium marinum DSM 15272]
          Length = 191

 Score =  104 bits (260), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/177 (41%), Positives = 110/177 (62%), Gaps = 4/177 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84
           +AG+DE GRGA AGP+V AA+ILD   +P G+ DSK ++  +RE  +++I T +  +S+ 
Sbjct: 1   MAGVDEAGRGACAGPLVAAAVILD-RPVP-GLADSKLLTPARREACHDEILTRAVDVSVV 58

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S    D+  +H+A ++A+  A+  L   P   L DG  + + L     A+ KGD ++ 
Sbjct: 59  VVSAADCDRLGLHRANIEALRRALARLTRRPGYVLTDGFPV-DGLGTPGLAMWKGDRVAA 117

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SIAAAS++AKVTRDRLM   H+++P Y F +H GY TA H+  ++  GP   HR T+
Sbjct: 118 SIAAASVVAKVTRDRLMVELHEQFPAYDFGTHKGYATAAHEAALRRHGPCAEHRSTY 174


>gi|294675016|ref|YP_003575632.1| ribonuclease HII [Prevotella ruminicola 23]
 gi|294473926|gb|ADE83315.1| ribonuclease HII [Prevotella ruminicola 23]
          Length = 209

 Score =  104 bits (260), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/185 (40%), Positives = 108/185 (58%), Gaps = 7/185 (3%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL        +NDSK++S KKR +L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPEGYQNELLNDSKQLSEKKRYQLREMIERDAVAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLPCQA-----FAVIKG 139
            + + IDK NI  A++ A++ A++ L+V P + ++DG R  P   P          ++KG
Sbjct: 73  VTPEEIDKINILNASILAMHRALDQLKVRPEAIIVDGNRFKPYKEPANGETLPHTTIVKG 132

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D   L+IAAASI+AK  RD  M    ++YP Y + S+ GYPT KH++ IK+ G +  HR 
Sbjct: 133 DGKYLAIAAASILAKTYRDDYMNQLAEEYPQYDWRSNKGYPTKKHREAIKQHGITPYHRK 192

Query: 200 TFRPL 204
           ++  L
Sbjct: 193 SYNLL 197


>gi|145295936|ref|YP_001138757.1| ribonuclease HII [Corynebacterium glutamicum R]
 gi|189043588|sp|A4QF39|RNH2_CORGB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|140845856|dbj|BAF54855.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 209

 Score =  104 bits (260), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 67/187 (35%), Positives = 92/187 (49%), Gaps = 4/187 (2%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREELYEKI 75
           +    + PVAG+DE GRGA  GP+ +AA IL   P      + DSK +S   RE+L   I
Sbjct: 1   MSRNGLGPVAGVDEAGRGACCGPISIAACILPDKPIQELAALTDSKNLSASTREKLMPLI 60

Query: 76  TSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
              A+  S+   S Q ID+  I  A +  +  AV  L   P   L D   +P        
Sbjct: 61  KKHALAWSVIVISAQDIDRFGIQHANISGMRRAVAALDTQPGYVLTDAMKVP-GFTVPYL 119

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            +I GD+ +  IAAAS++AK TRD +M      YP YG + H GY T  H   ++  G S
Sbjct: 120 PIIGGDASARCIAAASVLAKQTRDDIMTDMANDYPHYGLEIHKGYSTKIHMDAVRHHGAS 179

Query: 195 CIHRLTF 201
             HR ++
Sbjct: 180 PEHRYSY 186


>gi|167043779|gb|ABZ08470.1| putative Ribonuclease HII [uncultured marine microorganism
           HF4000_APKG3D20]
          Length = 252

 Score =  104 bits (260), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 109/219 (49%), Gaps = 49/219 (22%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-------------INDSKKISHKKREELY 72
           + G+DE GRG LAGPVV  A++L     P G             +NDSK+++ ++RE+L+
Sbjct: 19  IVGVDEAGRGCLAGPVVAGAMLL-----PTGFFKKASNRRRCVEVNDSKQLNEEQREKLF 73

Query: 73  EKIT-----SSAIISISSASHQYIDKHNIHKATLDAIYHAVENL---------------- 111
           + I           +   A+   I+  NI  AT  A+  A++ L                
Sbjct: 74  KTIERLRDLGELWFTTGEATVNEIESENIVGATCIAMRRAMDALGDKCEGRWGPQDKDEA 133

Query: 112 -----QVIPRS----ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162
                  I +S     L+DG+ + + LP     ++KGD++SL +A ASI AKVTRDR+MR
Sbjct: 134 EGFFASEIEQSERWIVLVDGKPM-KRLPHAHEGLVKGDTLSLGVAMASIAAKVTRDRIMR 192

Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
              + YP Y F S+ GY +  H + + E GP+ +HR  F
Sbjct: 193 KLDQSYPAYDFASNKGYGSPNHLRGLDEHGPTEVHRPRF 231


>gi|313680749|ref|YP_004058488.1| RNAse HII [Oceanithermus profundus DSM 14977]
 gi|313153464|gb|ADR37315.1| RNase HII [Oceanithermus profundus DSM 14977]
          Length = 197

 Score =  104 bits (259), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/190 (38%), Positives = 112/190 (58%), Gaps = 9/190 (4%)

Query: 20  EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           E+  W     VAG+DE GRGALAGPVV AA++L P   P+   DSK+++ ++RE+L + +
Sbjct: 3   EREFWRQGLRVAGVDEAGRGALAGPVVAAAVVLAPGRHPY--RDSKRLTPRRREQLLDHL 60

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
              A+   + + S   +D+  + +AT  A   A+  L++ P++ + D   +  +LP    
Sbjct: 61  QRHALAWGVGACSAAEVDRLGVLRATHCAAQRALARLRIAPQALVTDYLFLETELPL--L 118

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
           A  + ++ S S+AAASI+AKV RDR+M   H++YP YGF  H GY TA+H   +   GP 
Sbjct: 119 APARAEAQSPSVAAASILAKVVRDRIMVGLHRRYPGYGFARHKGYGTAEHLACLARLGPC 178

Query: 195 CIHRLTFRPL 204
             HR  F P+
Sbjct: 179 PQHRRRFAPV 188


>gi|260907251|ref|ZP_05915573.1| ribonuclease HII [Brevibacterium linens BL2]
          Length = 243

 Score =  104 bits (259), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/209 (35%), Positives = 104/209 (49%), Gaps = 32/209 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKKREELYEKITSSA- 79
           V G+DEVGRGALAGPV V   + D        +P GI+DSK++S   R+   +++   A 
Sbjct: 23  VIGVDEVGRGALAGPVSVGVALFDLREVTAAEVPAGIHDSKQLSALSRQTATDRVNGWAR 82

Query: 80  IISISSASHQYIDKHNI--------HKATLDAIYHAVENLQVIPRSA-LIDGR----SIP 126
             S+ S +   +D+  +         +A  + +   V +    P +  L+DG+    S P
Sbjct: 83  ATSVGSTTPNELDELGMTMALNLAGRRALSEMLLECVGSTDFPPSTMILLDGKHDWLSAP 142

Query: 127 EDLPC-------------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173
             L C             Q   VIKGD     IAAASI+AKV RD  M    K  P YG+
Sbjct: 143 LTLDCLGIFGDAADLQLPQVRTVIKGDGSVPVIAAASIVAKVQRDEEMIALAKANPQYGW 202

Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            S+VGY T KH++ I + GPS  HR +FR
Sbjct: 203 QSNVGYGTMKHRRGIADFGPSIHHRRSFR 231


>gi|309790097|ref|ZP_07684670.1| ribonuclease H [Oscillochloris trichoides DG6]
 gi|308227822|gb|EFO81477.1| ribonuclease H [Oscillochloris trichoides DG6]
          Length = 207

 Score =  104 bits (259), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/190 (41%), Positives = 109/190 (57%), Gaps = 7/190 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAII-----LDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
            AGIDE GRG  AGPVV AA++         ++  G+NDSK++    R  L+ +I   A+
Sbjct: 19  CAGIDEAGRGCWAGPVVAAAVVLAPSVFQQPDLLAGVNDSKQLDAATRGRLFGQIHHYAL 78

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
            + +       ID + I  AT  A+  A+ +L     + LID  ++P DL     A+IKG
Sbjct: 79  GVGVGIVPAYLIDAYGIVPATRLAMLSALLSLPCRVDALLIDALTLP-DLSLPQEALIKG 137

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D+ SLSIAAAS++AKVTRD LM+ A   +P YGF +H GY TA HQ+ +   G   +HR 
Sbjct: 138 DARSLSIAAASVVAKVTRDHLMQTADHVFPGYGFAAHKGYGTAAHQRALAIHGSCALHRR 197

Query: 200 TFRPLRNLSV 209
           TF+PL    +
Sbjct: 198 TFQPLLTYDI 207


>gi|251772986|gb|EES53543.1| Ribonuclease HII [Leptospirillum ferrodiazotrophum]
          Length = 195

 Score =  104 bits (259), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/183 (38%), Positives = 97/183 (53%), Gaps = 9/183 (4%)

Query: 28  GIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKI-TSSAIISI 83
           G+DEVGRG LAGPVV A +            GI DSK +S  +R+EL   I T +  +S+
Sbjct: 2   GVDEVGRGPLAGPVVAACVFFSAPVSRLSRLGIADSKSLSSDRRDELSRLIHTEADHVSL 61

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQ--VIPRSAL---IDGRSIPEDLPCQAFAVIK 138
             +S   +++ N+ +AT  A+  A++ L   ++  S L   +DGR     +  Q   V+ 
Sbjct: 62  GWSSVDEVNELNVRQATFLAMNRALQQLPPFLMRDSRLCVAVDGRDKIPGVEIQQRTVVG 121

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD   LS+AAASI+AKV RD  M      +P YGF  H GY T +H+  I   G S  HR
Sbjct: 122 GDRTVLSVAAASIVAKVARDSYMEKLDALFPGYGFAKHKGYGTEEHRNAILRLGLSPHHR 181

Query: 199 LTF 201
             F
Sbjct: 182 PLF 184


>gi|149004282|ref|ZP_01829059.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS69]
 gi|147757776|gb|EDK64790.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS69]
          Length = 134

 Score =  104 bits (259), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 56/127 (44%), Positives = 81/127 (63%), Gaps = 2/127 (1%)

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
           I I    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DLP    ++IKGD
Sbjct: 3   IGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLPISQTSIIKGD 60

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           + SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAKH + + + G + IHR +
Sbjct: 61  ANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTKLGVTPIHRTS 120

Query: 201 FRPLRNL 207
           F P+++L
Sbjct: 121 FEPVKSL 127


>gi|270700822|ref|ZP_06223058.1| ribonuclease HII [Haemophilus influenzae HK1212]
 gi|270315846|gb|EFA27947.1| ribonuclease HII [Haemophilus influenzae HK1212]
          Length = 137

 Score =  104 bits (259), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 55/125 (44%), Positives = 78/125 (62%)

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           ++  A    ID+ NI +A+L A+  AV++L++ P   L+DG  IP+DL   A AV+KGDS
Sbjct: 8   ALGRAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKGDS 67

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           I   I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR +F
Sbjct: 68  IVAEISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAEFGTLPQHRRSF 127

Query: 202 RPLRN 206
            P++ 
Sbjct: 128 APVKK 132


>gi|34558029|ref|NP_907844.1| ribonuclease HII RNase HII [Wolinella succinogenes DSM 1740]
 gi|34483747|emb|CAE10744.1| RIBONUCLEASE HII RNASE HII [Wolinella succinogenes]
          Length = 183

 Score =  104 bits (259), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 67/183 (36%), Positives = 98/183 (53%), Gaps = 8/183 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           + GIDE GRG LAG + VA ++L+      G+ DSKK+S K R  LY++I  +A   I  
Sbjct: 3   ICGIDEAGRGTLAGSLFVAGVVLEIE--IEGLRDSKKLSKKNRFRLYDEIVQNASFHIVE 60

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF-AVIKGDSISL 144
           +S Q +D   +     ++I       QV   S ++DG +       Q    +I+GDS+  
Sbjct: 61  SSAQKVDSLGLGICLRESILEICT--QVSADSYIMDGNT---SFGVQGVETLIRGDSLLP 115

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AK ++DR M    + +P+YGF  H GY T  H + I   G S  HR +F+  
Sbjct: 116 CISAASILAKASKDREMERLDRLHPEYGFAKHCGYGTKAHLEAILHLGYSPFHRQSFKLK 175

Query: 205 RNL 207
           R L
Sbjct: 176 RLL 178


>gi|149194772|ref|ZP_01871867.1| Ribonuclease H [Caminibacter mediatlanticus TB-2]
 gi|149135195|gb|EDM23676.1| Ribonuclease H [Caminibacter mediatlanticus TB-2]
          Length = 192

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/185 (37%), Positives = 101/185 (54%), Gaps = 12/185 (6%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG--------INDSKKISHKKREELYEKITS 77
           + GIDE GRG +AGP+V+A ++    N  +         + DSKK+S KKREEL+E I  
Sbjct: 3   ICGIDEAGRGPIAGPLVMAGVMFLMENGKWKMSNEYFEKLTDSKKLSPKKREELFEVIKE 62

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137
           ++I  I    ++ IDK  +  A    +   +  +    +  L DG +       +   +I
Sbjct: 63  NSIYHIVFIDNETIDKKGLSFAIKFGLNEIISKINA--KEYLFDGNT--NFGIKKIKPII 118

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGD     I+AASI+AKV+RDR M    KKYP+Y F  H GY T +H  +IK+ G S IH
Sbjct: 119 KGDLKIKEISAASILAKVSRDRFMIEIDKKYPEYNFKKHKGYITKEHINLIKKYGFSDIH 178

Query: 198 RLTFR 202
           R +++
Sbjct: 179 RKSYK 183


>gi|225677449|ref|ZP_03788413.1| ribonuclease HII [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225590507|gb|EEH11770.1| ribonuclease HII [Wolbachia endosymbiont of Muscidifurax uniraptor]
          Length = 149

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/146 (41%), Positives = 90/146 (61%), Gaps = 1/146 (0%)

Query: 59  DSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118
           DSKK++ + R+ LYEKI S A   I  AS + I+ +NI +AT  ++  A+ +L +     
Sbjct: 1   DSKKLTPQCRQVLYEKIISVAKFGIGMASVEEINSYNILQATKLSMKRALIDLDLELDYV 60

Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
           L+DG   PE +  Q  +++ GD++S SIAAASI+AKVTRDRLM+  H K+P+Y +  + G
Sbjct: 61  LVDGNQPPE-VKWQVKSIVNGDNLSTSIAAASIVAKVTRDRLMQELHNKHPEYNWYKNKG 119

Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPL 204
           Y T +H   I   G +  HR  F P+
Sbjct: 120 YGTKEHLNAIGLYGITEHHRKNFAPI 145


>gi|291448253|ref|ZP_06587643.1| ribonuclease HII [Streptomyces roseosporus NRRL 15998]
 gi|291351200|gb|EFE78104.1| ribonuclease HII [Streptomyces roseosporus NRRL 15998]
          Length = 236

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/187 (39%), Positives = 108/187 (57%), Gaps = 6/187 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS--I 83
           VAG+DEVGRGA AGPV V A I      P G+ DSK ++ ++R EL E +  S + +  +
Sbjct: 23  VAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLLTPRRRAEL-EPVLRSWVTACAL 81

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             AS Q ID   +  A   A   A+E L V P + ++DG+      P +   VIKGD   
Sbjct: 82  GDASPQEIDDLGMTAALRLAAVRALEGLPVRPDAVILDGKHDYLGAPWKVRTVIKGDQSC 141

Query: 144 LSIAAASIIAKVTRDRLMR---IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           +++AAAS+IAKV RDR+M     A +    + FD++ GYP+  H+  ++E+GP+  HRL+
Sbjct: 142 IAVAAASVIAKVHRDRMMAELGAASEDCGGFAFDANAGYPSPVHRAALEERGPTVHHRLS 201

Query: 201 FRPLRNL 207
           +  L  L
Sbjct: 202 WSYLDAL 208


>gi|108804231|ref|YP_644168.1| RNase HII [Rubrobacter xylanophilus DSM 9941]
 gi|108765474|gb|ABG04356.1| RNase HII [Rubrobacter xylanophilus DSM 9941]
          Length = 204

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/198 (36%), Positives = 110/198 (55%), Gaps = 11/198 (5%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           ER  +  +A        PVAG+DE GRGALAGP+V AA+ILD   +  G++DSK+++   
Sbjct: 9   ERELYAFDAAWAASRRPPVAGVDEAGRGALAGPLVAAAVILD-GGVVEGLDDSKRLARPA 67

Query: 68  REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA--LIDGR- 123
           RE L  ++  SA  +S+      +ID+H +  A  + +  AV  L  +PR+   L DG  
Sbjct: 68  RERLLPEVLGSAEALSVVVFPAWWIDEHGLGAANREVLRRAVGRL--LPRAGCCLADGNL 125

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +   + C   A    D  S ++AAAS++AKV RD  M      +P YGF+ + GY T +
Sbjct: 126 RLGPRIDCLPGA----DGRSAAVAAASVVAKVLRDAAMSALGAAHPGYGFERNCGYGTPE 181

Query: 184 HQQVIKEKGPSCIHRLTF 201
           H++ +   GP  +HRL++
Sbjct: 182 HRRALARLGPCRVHRLSY 199


>gi|46200090|ref|YP_005757.1| ribonuclease HII [Thermus thermophilus HB27]
 gi|73917834|sp|Q72GR0|RNH2_THET2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|46197718|gb|AAS82130.1| ribonuclease HII [Thermus thermophilus HB27]
          Length = 203

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/192 (40%), Positives = 108/192 (56%), Gaps = 6/192 (3%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
           LEA    K +  VAG+DE GRGA AGP+VV  ++L P   PF   DSK +S + RE L E
Sbjct: 6   LEAPFWRKGLL-VAGLDEAGRGAWAGPIVVGVVVLPPGEYPF--RDSKLLSPRARERLAE 62

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           K+   A+  ++  A    +D+  + KATL A   A+ +L + P + + D   +P      
Sbjct: 63  KVKEVALAFALGVAEAAEVDRLGVLKATLLAAERALLSLPLAPEALVTDYLPLPTP--LP 120

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             +  K D  S ++AAASI+AKV RDR+M    + YP YGF  H GY T +HQ+ +   G
Sbjct: 121 LLSPPKADEKSPTVAAASILAKVHRDRIMAELDRLYPGYGFARHKGYGTPEHQEALLALG 180

Query: 193 PSCIHRLTFRPL 204
           PS +HR  F P+
Sbjct: 181 PSPVHRKRFAPV 192


>gi|229815421|ref|ZP_04445753.1| hypothetical protein COLINT_02469 [Collinsella intestinalis DSM
           13280]
 gi|229808954|gb|EEP44724.1| hypothetical protein COLINT_02469 [Collinsella intestinalis DSM
           13280]
          Length = 262

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 98/172 (56%), Gaps = 9/172 (5%)

Query: 34  RGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYID 92
           RG++AGP+ V A+ L      +GINDSK+++  KRE L  +I   A  + I   +   ID
Sbjct: 85  RGSVAGPLTVCAVSLPSEPRIWGINDSKQLTPAKREMLAVRIAEVATAVGICHIAPSRID 144

Query: 93  KHNIHKATLDAIYHAVENLQVIPRSALIDGR---SIPEDLPCQAFAVIKGDSISLSIAAA 149
           +  + +A  +A+  AV +  + P   L+DG    ++P +       V+KGD+    IAAA
Sbjct: 145 EIGMARALREAVAGAVADTGLEPDCVLMDGNPLGAVPNERD-----VVKGDAKVACIAAA 199

Query: 150 SIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SI+AKVTRD LM     +YP+Y      GY +A+H Q IK+ G S +HR++F
Sbjct: 200 SIVAKVTRDELMVELDTEYPEYHLAQSKGYASAEHIQAIKDHGLSPVHRVSF 251


>gi|154148444|ref|YP_001406026.1| ribonuclease HII [Campylobacter hominis ATCC BAA-381]
 gi|189043574|sp|A7I0I5|RNH2_CAMHC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|153804453|gb|ABS51460.1| ribonuclease HII [Campylobacter hominis ATCC BAA-381]
          Length = 185

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/177 (37%), Positives = 94/177 (53%), Gaps = 6/177 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           + GIDE GRG LAGP+ +A  IL  N    G+ DSKK+S K+RE LYE+I  ++   I  
Sbjct: 3   ICGIDEAGRGPLAGPLHIAGCIL--NKQIEGLKDSKKLSEKRREILYEEIIKNSTYKIVK 60

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF-AVIKGDSISL 144
            S   IDK  + K     +   V+         + DG S       + F  ++K D    
Sbjct: 61  FSAAQIDKFGLSKCLKLGLNELVDFFAPFEVKIIFDGNS---KFGAEGFETMVKADDKIK 117

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            ++AASI+AKV+RDR+MR    K+P Y F  + GY +  H + I++ G   IHR +F
Sbjct: 118 EVSAASILAKVSRDRVMRNFDIKFPFYDFAKNKGYGSKAHIEAIQKYGYCEIHRKSF 174


>gi|47459459|ref|YP_016321.1| ribonuclease HII [Mycoplasma mobile 163K]
 gi|47458789|gb|AAT28110.1| ribonuclease HII [Mycoplasma mobile 163K]
          Length = 205

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 96/181 (53%), Gaps = 1/181 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           +   DEVGRG+LAGP+VVA + L PN     + DSKK++ ++REEL   I  +       
Sbjct: 24  IIACDEVGRGSLAGPIVVACVNLKPNFFNEKVRDSKKLNPRQREELSILIKENGSFHFCY 83

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + ID  N  +AT  A    +   +      ++           +   + KGD+ S S
Sbjct: 84  INSKEIDLLNPLEATKKATTSCLNKFEEKGSQIILLDYLSNFSYSKKFINIKKGDNTSFS 143

Query: 146 IAAASIIAKVTRDRLM-RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IA+ASI+AKV RD  M  + + ++  Y F  + GY T  H + IK  GPS IHRL+++PL
Sbjct: 144 IASASILAKVERDNFMINLNNDEFDIYDFFKNKGYGTKNHLEAIKIFGPSKIHRLSYKPL 203

Query: 205 R 205
           +
Sbjct: 204 K 204


>gi|227503370|ref|ZP_03933419.1| ribonuclease HII [Corynebacterium accolens ATCC 49725]
 gi|227075873|gb|EEI13836.1| ribonuclease HII [Corynebacterium accolens ATCC 49725]
          Length = 213

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 102/192 (53%), Gaps = 6/192 (3%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN---DSKKISHKKREE 70
            E  + +  + PVAG+DE GRGA  GP+ +AA IL P  I   ++   DSKK++ ++RE+
Sbjct: 10  FEVALAKAGLGPVAGVDEAGRGACCGPITIAACIL-PERIVGELDTLTDSKKLTPRQREK 68

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L+  I   A+  S+       IDK  I  A    +  AV  L+  P   L D   IP  L
Sbjct: 69  LFPIIKDKAVDWSVVHIGAGDIDKRGIQHANTSGMRRAVARLEQRPGYVLSDALFIP-GL 127

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                 ++ GD+ +  IAAAS++AKV+RD LM    +++P YG   H GY T  H+  I 
Sbjct: 128 TQPHLPIVGGDAAARCIAAASVLAKVSRDHLMLDLDERFPGYGLAGHKGYGTKAHEAAIA 187

Query: 190 EKGPSCIHRLTF 201
             G S  HR+++
Sbjct: 188 ALGASPEHRMSY 199


>gi|296270667|ref|YP_003653299.1| ribonuclease H [Thermobispora bispora DSM 43833]
 gi|296093454|gb|ADG89406.1| Ribonuclease H [Thermobispora bispora DSM 43833]
          Length = 253

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/200 (34%), Positives = 107/200 (53%), Gaps = 10/200 (5%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD---PNNIP------FGINDSKK 62
           + +E  +R      +AG+DEVGRGA AGPVVV   + D   P  +P        + DSK 
Sbjct: 28  YAIEEELRAAGAVRIAGLDEVGRGAWAGPVVVCVAVTDLSPPPELPGRGGRSVRLTDSKL 87

Query: 63  ISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           ++   RE   E +        I  +S Q ID+  + +A   A   A+  L   P + ++D
Sbjct: 88  LTRASREAFAEVLPGWLNCHGIGESSPQEIDELGMTEALRLAAERALAALPYRPDAIILD 147

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           G+      P  A   ++ D  S+S+AAAS++AKV RDRLM    +++P+YGF  + GYP+
Sbjct: 148 GKHDFLRGPWTARCEVQADRRSVSVAAASVLAKVYRDRLMAALGEEHPEYGFADNAGYPS 207

Query: 182 AKHQQVIKEKGPSCIHRLTF 201
             H++ + E GP+  HRL++
Sbjct: 208 PVHRRALAEHGPTPHHRLSW 227


>gi|294056229|ref|YP_003549887.1| Ribonuclease H [Coraliomargarita akajimensis DSM 45221]
 gi|293615562|gb|ADE55717.1| Ribonuclease H [Coraliomargarita akajimensis DSM 45221]
          Length = 238

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/211 (36%), Positives = 104/211 (49%), Gaps = 35/211 (16%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPN---NIPF-----GINDSKKISHKKREELY--- 72
           W + GIDE GRG LAGPVV  A +L  +   N+        INDSK++S   RE  Y   
Sbjct: 17  WLI-GIDEAGRGCLAGPVVAGACVLADDFFDNVSALERSARINDSKQLSADAREGQYRLL 75

Query: 73  EKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS------------- 117
           E +    +I  +++S +   I + NI  A   A+  AV+ L V                 
Sbjct: 76  EDLQGEGLIDFAVASGTVTEIAELNILGANRLAMQRAVDALAVRATGWELPVLGAEDPLF 135

Query: 118 -------ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170
                   ++DGR + +  P     ++KGD  SL+IA ASI AKVTRDRLM    ++YP 
Sbjct: 136 AAQAAVKLIVDGRPL-KPWPYAHEGIVKGDGKSLAIAMASIAAKVTRDRLMLELDQQYPQ 194

Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           YGF  H GY T +H+  +  +GP   HR  F
Sbjct: 195 YGFAQHKGYGTKQHRHALAAEGPCPEHRELF 225


>gi|75764884|ref|ZP_00744243.1| Ribonuclease HII [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74487629|gb|EAO51486.1| Ribonuclease HII [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 167

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 98/152 (64%), Gaps = 3/152 (1%)

Query: 57  INDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP 115
           + DSKK+S  KRE  Y++I   AI I +   S Q ID  NI++AT  A+  AV  L   P
Sbjct: 15  LYDSKKLSEAKRERFYDEIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVAYLSCTP 74

Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
           +  LID   +P  +P    ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP+YGF+ 
Sbjct: 75  QHLLIDAMKLPTPIP--QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPEYGFEQ 132

Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           H+GY T +H + I+  G    HR +F P++++
Sbjct: 133 HMGYGTKQHLEAIEVHGVLDEHRKSFAPIKDM 164


>gi|306836387|ref|ZP_07469365.1| ribonuclease HII [Corynebacterium accolens ATCC 49726]
 gi|304567747|gb|EFM43334.1| ribonuclease HII [Corynebacterium accolens ATCC 49726]
          Length = 213

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 101/192 (52%), Gaps = 6/192 (3%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN---DSKKISHKKREE 70
            E  +    + PVAG+DE GRGA  GP+ +AA IL P  I   ++   DSKK++ ++RE+
Sbjct: 10  FEVALARAGLGPVAGVDEAGRGACCGPITIAACIL-PERIVGELDTLTDSKKLTPRQREK 68

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L+  I   A+  S+       IDK  I  A    +  AV  L+  P   L D   IP  L
Sbjct: 69  LFPIIKDKAVDWSVVHIGAGDIDKRGIQHANTSGMRRAVARLEQRPGYVLSDALFIP-GL 127

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                 ++ GD+ +  IAAAS++AKV+RD LM    +++P YG   H GY T  H+  I 
Sbjct: 128 TQPHLPIVGGDAAARCIAAASVLAKVSRDHLMLDLDERFPGYGLAGHKGYGTKAHEAAIA 187

Query: 190 EKGPSCIHRLTF 201
             G S  HR+++
Sbjct: 188 ALGASPEHRMSY 199


>gi|315502439|ref|YP_004081326.1| ribonuclease h [Micromonospora sp. L5]
 gi|315409058|gb|ADU07175.1| Ribonuclease H [Micromonospora sp. L5]
          Length = 291

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 107/194 (55%), Gaps = 6/194 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN---DSKKISHKKR 68
           + LE  ++ +    VAG DE GRGA AGP+V AA IL P      I+   DSK ++   R
Sbjct: 16  YALERALQRRGFRHVAGADEAGRGACAGPLVAAAAIL-PEGRRGEIDELADSKLLTPAAR 74

Query: 69  EELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E +++++ + A+  ++     + +D   +H   L A+  A+ +L   P   L DG  + +
Sbjct: 75  ERVHDEVVARALAYAVVVIPAEEVDARGLHVCNLAAMRRALASLTTRPEYVLTDGFGV-D 133

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            L     AV KGD ++  +AAAS++AKVTRDR+M     ++P YGF  H GY TA+H   
Sbjct: 134 GLDVPGLAVWKGDRVAACVAAASVLAKVTRDRMMVELDGRFPGYGFAEHKGYITAEHSAA 193

Query: 188 IKEKGPSCIHRLTF 201
           ++  GP   HR ++
Sbjct: 194 LRALGPCREHRFSY 207


>gi|254391049|ref|ZP_05006257.1| ribonuclease HII [Streptomyces clavuligerus ATCC 27064]
 gi|294815520|ref|ZP_06774163.1| Ribonuclease [Streptomyces clavuligerus ATCC 27064]
 gi|326443870|ref|ZP_08218604.1| ribonuclease HII [Streptomyces clavuligerus ATCC 27064]
 gi|197704744|gb|EDY50556.1| ribonuclease HII [Streptomyces clavuligerus ATCC 27064]
 gi|294328119|gb|EFG09762.1| Ribonuclease [Streptomyces clavuligerus ATCC 27064]
          Length = 235

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/177 (39%), Positives = 104/177 (58%), Gaps = 1/177 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRGA AGPV V A I      P G+ DSK IS ++R+EL  ++       ++ 
Sbjct: 23  IAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLISPRRRDELAAELERWVTAHALG 82

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS Q ID   +  A   A   A++ L V P + ++DG+      P     VIKGD   +
Sbjct: 83  HASPQEIDDLGMTAALRLAACRALDGLPVRPEAVILDGKHDYLGAPWTVRTVIKGDRSCV 142

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           ++AAAS+IAKV RD LM    +++ D+ F  + GYP+  H+ V++E+GP+  HRL++
Sbjct: 143 AVAAASVIAKVRRDALMAELPQEFADFAFADNAGYPSPVHKAVLEERGPTPYHRLSW 199


>gi|257459902|ref|ZP_05625008.1| ribonuclease HII [Campylobacter gracilis RM3268]
 gi|257442754|gb|EEV17891.1| ribonuclease HII [Campylobacter gracilis RM3268]
          Length = 187

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 91/177 (51%), Gaps = 4/177 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           + GIDE GRG LAGP+ VA  +L       G+ DSKK+S K+REELY +I  ++   I  
Sbjct: 5   ICGIDEAGRGCLAGPLCVAGCVLQRE--IAGLADSKKLSEKRREELYARIIENSRYKIVE 62

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S   +D+  +      A+   +          + DG +       Q   ++K D+    
Sbjct: 63  ISSAQVDEAGLSSCLRSALEQILAYFMGFSGQIIYDGNATFGVRGLQT--LVKADAQIAE 120

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           ++AASI+AKVTRDR M    ++YP YGF  + GY +  H   I+  G +  HR +++
Sbjct: 121 VSAASILAKVTRDRTMNELARRYPQYGFAQNKGYGSRAHIAAIERYGLTPFHRASYK 177


>gi|225155690|ref|ZP_03724178.1| Ribonuclease H [Opitutaceae bacterium TAV2]
 gi|224803484|gb|EEG21719.1| Ribonuclease H [Opitutaceae bacterium TAV2]
          Length = 278

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/217 (35%), Positives = 112/217 (51%), Gaps = 39/217 (17%)

Query: 28  GIDEVGRGALAGPVVVAAII-----LDPNNIPFG---INDSKKISHKKREELYEKITSSA 79
           G+DE GRGALAGPVV AA++     L+   +      +NDSK++S  +R+ L  +  + A
Sbjct: 48  GVDEAGRGALAGPVVAAAVLVRRVFLESRWVAHNASRVNDSKQLSAPERDALAFEFETLA 107

Query: 80  I-----ISISSASHQYIDKHNIHKATLDAIYHAVENL--------QVIP-----RSAL-- 119
           +     +    A    I++ NI  AT  A+  A+E +        QV P      + L  
Sbjct: 108 VENAIRVGCGVAEVSEIEQFNILGATKLAMRRALECIHPPEAFQQQVEPDLFSTEAELAA 167

Query: 120 ----IDGRSIPEDLPCQAF-----AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170
               +  R I + LP ++F      ++KGD+ SL IA ASIIAKVTRDRL+     ++P 
Sbjct: 168 WRNRVSCRIIIDGLPLKSFPYPHLGIVKGDARSLCIAMASIIAKVTRDRLLTELDARHPG 227

Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           YGF  H GY T +H++ +   GP   HR  F  LR L
Sbjct: 228 YGFAQHKGYGTEEHREAVLRLGPCVQHRGLF--LRKL 262


>gi|297624822|ref|YP_003706256.1| Ribonuclease H [Truepera radiovictrix DSM 17093]
 gi|297166002|gb|ADI15713.1| Ribonuclease H [Truepera radiovictrix DSM 17093]
          Length = 211

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/205 (37%), Positives = 115/205 (56%), Gaps = 7/205 (3%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           +IP  P + LE  + ++    +AG+DE GRGALAGPVV AA++L   + PF   DSK +S
Sbjct: 2   TIPTPPDWRLEHTLWQRGYGVLAGVDEAGRGALAGPVVAAAVVLPRGDHPF--RDSKTLS 59

Query: 65  HKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALID 121
              RE L E++   A+  ++  AS   +D+ N+ +AT  A   A+  L  +V     + D
Sbjct: 60  PAARETLAEEVRRRALAWAVGCASASEVDRLNVLQATHLAAQRALCALAGRVAVDGLVTD 119

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
              +P   P    AV K D+ S+ +AAAS++AK  RD LMR   ++YP YGF  H GY +
Sbjct: 120 FLKLP--FPGPVLAVPKADATSVQVAAASLLAKTVRDALMRRLGERYPAYGFARHKGYGS 177

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRN 206
           + H + +   GP   HR +F P++ 
Sbjct: 178 STHLRALAAHGPCPEHRRSFGPVQR 202


>gi|182435502|ref|YP_001823221.1| ribonuclease HII [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|238688997|sp|B1VXS2|RNH2_STRGG RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|178464018|dbj|BAG18538.1| putative ribonuclease HII [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 236

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 105/180 (58%), Gaps = 4/180 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRGA AGPV V A +      P G+ DSK ++ ++R EL   + S     ++ 
Sbjct: 23  VAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLLTPRRRAELDPVLRSWVTAYALG 82

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS Q ID   +  A   A   A+E L V P + ++DG+     +P +   VIKGD   +
Sbjct: 83  DASPQEIDDLGMTAALRLAAVRALEGLPVRPDAVILDGKHDYLGVPWKVRTVIKGDQSCI 142

Query: 145 SIAAASIIAKVTRDRLMR---IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           ++AAAS+IAKV RDR+M     A +   D+ F ++ GYP+  H+  ++E+GP+  HRL++
Sbjct: 143 AVAAASVIAKVHRDRMMAELGAASEDCADFDFGANAGYPSPVHRAALEERGPTAHHRLSW 202


>gi|283953657|ref|ZP_06371188.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 414]
 gi|283794698|gb|EFC33436.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 414]
          Length = 198

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 110/197 (55%), Gaps = 8/197 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F+ + ++ E ++  + GIDE GRGALAGP+++AA  L  N    G+ DSKK+S KKR
Sbjct: 9   KTLFDTKELLNEFDINLI-GIDEAGRGALAGPMMMAACKL--NKQLDGLCDSKKLSEKKR 65

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           EELYE I  ++   I + S + ID   +       +    ++ +    + L DG +   +
Sbjct: 66  EELYEIIIKNSSYLILAFSSEQIDALGLSTCLKTGLKLIKKHFKT-ENNFLYDGNT---N 121

Query: 129 LPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           L        IK D+  L ++AASI+AKV++DR+M    K +P Y F+ +  Y T  H+++
Sbjct: 122 LGINGIKTQIKADASILQVSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKEL 181

Query: 188 IKEKGPSCIHRLTFRPL 204
           I + G   +HR +F+ L
Sbjct: 182 IAKFGICKLHRKSFKLL 198


>gi|302865895|ref|YP_003834532.1| ribonuclease H [Micromonospora aurantiaca ATCC 27029]
 gi|302568754|gb|ADL44956.1| Ribonuclease H [Micromonospora aurantiaca ATCC 27029]
          Length = 291

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 107/194 (55%), Gaps = 6/194 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN---DSKKISHKKR 68
           + LE  ++ +    VAG DE GRGA AGP+V AA IL P      I+   DSK ++   R
Sbjct: 16  YALERALQRRGFRHVAGADEAGRGACAGPLVAAAAIL-PEGRRGEIDELADSKLLTPAAR 74

Query: 69  EELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E +++++ + A+  ++     + +D   +H   L A+  A+ +L   P   L DG  + +
Sbjct: 75  ERVHDEVVARALAYAVVVIPAEEVDARGLHVCNLAAMRRALASLTTRPEYVLTDGFGV-D 133

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            L     AV KGD ++  +AAAS++AKVTRDR+M     ++P YGF  H GY TA+H   
Sbjct: 134 GLDVPGLAVWKGDRVAACVAAASVLAKVTRDRIMVELDGRFPGYGFAEHKGYITAEHSAA 193

Query: 188 IKEKGPSCIHRLTF 201
           ++  GP   HR ++
Sbjct: 194 LRALGPCREHRFSY 207


>gi|69246757|ref|ZP_00604105.1| Ribonuclease H [Enterococcus faecium DO]
 gi|68195111|gb|EAN09571.1| Ribonuclease H [Enterococcus faecium DO]
          Length = 151

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/125 (44%), Positives = 79/125 (63%), Gaps = 2/125 (1%)

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
           I I     Q ID  NI++A+  A+  AVE L ++P   LID  ++  DLP Q   +IKGD
Sbjct: 25  IGIGIVDQQTIDDVNIYEASKLAMIQAVEKLSIVPSYLLIDAMTL--DLPIQQEKIIKGD 82

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           + S+SIAAASIIAKV RD+LM+     YP YGF  + GY T +H + ++ +G + IHR +
Sbjct: 83  ARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGYGTKEHLEGLERQGITPIHRKS 142

Query: 201 FRPLR 205
           F P++
Sbjct: 143 FAPVK 147


>gi|153951148|ref|YP_001397283.1| ribonuclease HII [Campylobacter jejuni subsp. doylei 269.97]
 gi|166225179|sp|A7H1A3|RNH2_CAMJD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|152938594|gb|ABS43335.1| ribonuclease HII [Campylobacter jejuni subsp. doylei 269.97]
          Length = 191

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 112/203 (55%), Gaps = 20/203 (9%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F+ + ++ E ++  + GIDE GRGALAGP+++AA  L  N    G+ DSKK+S KKR
Sbjct: 2   KTLFDTKELLNEFDINLI-GIDEAGRGALAGPMMMAACKL--NKKLDGLCDSKKLSEKKR 58

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR------SALIDG 122
           EELYE I  ++   I + S + ID       TL         L++I +      + L DG
Sbjct: 59  EELYEIIIKNSNYLILAFSSEQID-------TLGLSTCLKTGLKLIKKHFKAENNFLYDG 111

Query: 123 RSIPEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
            +   +L        IK D+  L ++AASI+AKV++D++M    K +P Y F+ +  Y T
Sbjct: 112 NT---NLGINGIKTQIKADTSILQVSAASILAKVSKDKVMNFLAKDFPCYEFEKNKAYGT 168

Query: 182 AKHQQVIKEKGPSCIHRLTFRPL 204
             H++VI + G   +HR +F+ L
Sbjct: 169 KAHKEVIAKFGICKLHRKSFKLL 191


>gi|57236923|ref|YP_178038.1| ribonuclease HII [Campylobacter jejuni RM1221]
 gi|86150560|ref|ZP_01068784.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|86152389|ref|ZP_01070599.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 260.94]
 gi|121612583|ref|YP_999729.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 81-176]
 gi|148926828|ref|ZP_01810507.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CG8486]
 gi|218561703|ref|YP_002343482.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|315123625|ref|YP_004065629.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
 gi|11387106|sp|Q9PJA1|RNH2_CAMJE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|73621839|sp|Q5HXE7|RNH2_CAMJR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166225180|sp|A1VX88|RNH2_CAMJJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|57165727|gb|AAW34506.1| ribonuclease HII [Campylobacter jejuni RM1221]
 gi|85839012|gb|EAQ56277.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85840686|gb|EAQ57938.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 260.94]
 gi|87248943|gb|EAQ71905.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 81-176]
 gi|112359409|emb|CAL34191.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|145844553|gb|EDK21660.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CG8486]
 gi|284925313|gb|ADC27665.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315017347|gb|ADT65440.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
 gi|315057450|gb|ADT71779.1| Ribonuclease HII [Campylobacter jejuni subsp. jejuni S3]
          Length = 191

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 109/197 (55%), Gaps = 8/197 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F+ + ++ E ++  + GIDE GRGALAGP+++AA  L  N    G+ DSKK+S KKR
Sbjct: 2   KTLFDTKELLNEFDINLI-GIDEAGRGALAGPMMMAACKL--NKQLDGLCDSKKLSEKKR 58

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           EELYE I  ++   I + S + ID   +       +    ++ +    + L DG +   +
Sbjct: 59  EELYEIIIKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFKT-ENNFLYDGNT---N 114

Query: 129 LPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           L        IK D+  L ++AASI+AKV++DR+M    K +P Y F+ +  Y T  H++ 
Sbjct: 115 LGINGIKTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKEF 174

Query: 188 IKEKGPSCIHRLTFRPL 204
           I + G   +HR +F+ L
Sbjct: 175 IAKFGICKLHRKSFKLL 191


>gi|157414331|ref|YP_001481587.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 81116]
 gi|172046982|sp|A8FJH3|RNH2_CAMJ8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157385295|gb|ABV51610.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 81116]
 gi|315931297|gb|EFV10266.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 327]
          Length = 191

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 110/197 (55%), Gaps = 8/197 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F+ + ++ E ++  + GIDE GRGALAGP+++AA  L  N    G+ DSKK+S KKR
Sbjct: 2   KTLFDTKELLNEFDINLI-GIDEAGRGALAGPMMMAACKL--NKKLDGLCDSKKLSEKKR 58

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           EELYE I  ++   I + S + ID   +       +    ++ +    + L DG +   +
Sbjct: 59  EELYEIIIKNSNYLILAFSSEQIDALGLSTCLKTGLKLIKKHFKT-ENNFLYDGNT---N 114

Query: 129 LPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           L        IK D+  L ++AASI+AKV++DR+M    K +P Y F+ +  Y T  H+++
Sbjct: 115 LGINGIKTQIKADASILQVSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKEL 174

Query: 188 IKEKGPSCIHRLTFRPL 204
           I + G   +HR +F+ L
Sbjct: 175 IAKFGICKLHRKSFKLL 191


>gi|297191618|ref|ZP_06909016.1| ribonuclease HII [Streptomyces pristinaespiralis ATCC 25486]
 gi|197719359|gb|EDY63267.1| ribonuclease HII [Streptomyces pristinaespiralis ATCC 25486]
          Length = 233

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/177 (39%), Positives = 104/177 (58%), Gaps = 1/177 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAGIDEVGRGA AGPV V A +      P G+ DSK I+ K+R E+ E +       ++ 
Sbjct: 23  VAGIDEVGRGAWAGPVTVCAAVTGLRRPPVGLTDSKLITPKRRAEMAELLEGWVTAHALG 82

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID+  +  A   A   A+E L V P + ++DG+     +P Q   VIKGD   +
Sbjct: 83  HASPEEIDELGMTAALRLAAGRALEGLPVRPDAIILDGKHDYLGVPWQVRTVIKGDQSCV 142

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           ++AAAS+IAKV RD +M    +++  +GF  + GYP+  H+  ++E GP+  HRL++
Sbjct: 143 AVAAASVIAKVHRDAMMAQLPEEFTAFGFADNAGYPSPVHKAALRELGPTPYHRLSW 199


>gi|283956188|ref|ZP_06373673.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792342|gb|EFC31126.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 1336]
          Length = 191

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 110/197 (55%), Gaps = 8/197 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F+ + ++ E ++  + GIDE GRGALAGP+++AA  L  N    G+ DSKK+S KKR
Sbjct: 2   KTLFDTKELLNEFDI-NLIGIDEAGRGALAGPMMMAACKL--NKKLDGLCDSKKLSEKKR 58

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           EELYE I  ++   I + S + ID   +       +    ++ +    + L DG +   +
Sbjct: 59  EELYEIIIKNSNYLILAFSSEQIDALGLSTCLKTGLKLIKKHFKT-ENNFLYDGNT---N 114

Query: 129 LPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           L        IK D+  L ++AASI+AKV++DR+M    K +P Y F+ +  Y T  H+++
Sbjct: 115 LGINGIKTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPYYEFEKNKAYGTKAHKKL 174

Query: 188 IKEKGPSCIHRLTFRPL 204
           I + G   +HR +F+ L
Sbjct: 175 IAKFGICKLHRKSFKLL 191


>gi|86153986|ref|ZP_01072188.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88597652|ref|ZP_01100885.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 84-25]
 gi|85842524|gb|EAQ59737.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88189956|gb|EAQ93932.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 84-25]
 gi|307746973|gb|ADN90243.1| Ribonuclease HII [Campylobacter jejuni subsp. jejuni M1]
 gi|315929937|gb|EFV09094.1| Ribonuclease HII [Campylobacter jejuni subsp. jejuni 305]
          Length = 191

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 109/197 (55%), Gaps = 8/197 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F+ + ++ E ++  + GIDE GRGALAGP+++AA  L  N    G+ DSKK+S KKR
Sbjct: 2   KTLFDTKELLNEFDINLI-GIDEAGRGALAGPMMMAACKL--NKQLDGLCDSKKLSEKKR 58

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           EELYE I  ++   I + S + ID   +       +    ++ +    + L DG +   +
Sbjct: 59  EELYEIIIKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFKT-ENNFLYDGNT---N 114

Query: 129 LPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           L        IK D+  L ++AASI+AKV++DR+M    K +P Y F+ +  Y T  H++ 
Sbjct: 115 LGINGIKTQIKADASILQVSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKEF 174

Query: 188 IKEKGPSCIHRLTFRPL 204
           I + G   +HR +F+ L
Sbjct: 175 IAKFGICKLHRKSFKLL 191


>gi|255020983|ref|ZP_05293038.1| Ribonuclease HII [Acidithiobacillus caldus ATCC 51756]
 gi|254969588|gb|EET27095.1| Ribonuclease HII [Acidithiobacillus caldus ATCC 51756]
          Length = 168

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 95/166 (57%), Gaps = 7/166 (4%)

Query: 41  VVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKA 99
           + VAA+IL    +P G+ DSKK+S  +R  L +KI + A   +I+SA    I+++N+ +A
Sbjct: 1   MTVAAVILA-RPLP-GLADSKKLSPLRRAVLSQKIRAEAWAWAIASAGSWEIERYNVLQA 58

Query: 100 TLDAIYHAVENLQVIPRSALIDG-RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD 158
           TL A+  A+  L   P    +DG R++P     QA  +++GDS   +IAAASI+AK  RD
Sbjct: 59  TLRAMDRALRALPPGPWRVAVDGNRALPH---WQAETLVRGDSRLDAIAAASILAKTARD 115

Query: 159 RLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
             M    +  P Y F  H GYPT  H   ++  GPS IHR  F P+
Sbjct: 116 AEMDALDRHLPGYAFGQHRGYPTPLHLAALQRLGPSLIHRRGFAPV 161


>gi|294786711|ref|ZP_06751965.1| ribonuclease HII [Parascardovia denticolens F0305]
 gi|294485544|gb|EFG33178.1| ribonuclease HII [Parascardovia denticolens F0305]
          Length = 240

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 121/229 (52%), Gaps = 40/229 (17%)

Query: 10  PHFELE-AMVREKN----MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GIND 59
           P +++E A+++E +     W + G DEVGRG LAGPV+V A +    +IP      G+ D
Sbjct: 12  PSWQVEEALLQEADDRRPQW-IIGCDEVGRGCLAGPVMVGACLFRAEDIPLLPIPAGLKD 70

Query: 60  SKKISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKA-----------TLDAIYHA 107
           SK ++ KKRE L + + + +A  ++ S  ++ ID + I +A            +  +  A
Sbjct: 71  SKLLTPKKRESLLDPLRAWAAGTAVGSCDNRGIDSYGIMEALGAAAIQAIDQAVFGLIGA 130

Query: 108 VENLQVIP-----------RSALI-DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKV 155
            + + VI            RS L    R  P+D+      V+KGD     +A AS+IAKV
Sbjct: 131 GDRVAVILDGPYDYISPAFRSLLAPQARIDPDDM--TVTTVVKGDRRCACVAGASVIAKV 188

Query: 156 TRDRLMRIAHKKYPD---YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           TRDR M     ++P+   Y +  + GY +A+H++ IKE+GPS  HRL++
Sbjct: 189 TRDRYMVDLADRHPEWEAYAWRKNKGYGSAEHREAIKEQGPSPYHRLSW 237


>gi|315226326|ref|ZP_07868114.1| ribonuclease HII 2 [Parascardovia denticolens DSM 10105]
 gi|315120458|gb|EFT83590.1| ribonuclease HII 2 [Parascardovia denticolens DSM 10105]
          Length = 250

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 121/229 (52%), Gaps = 40/229 (17%)

Query: 10  PHFELE-AMVREKN----MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GIND 59
           P +++E A+++E +     W + G DEVGRG LAGPV+V A +    +IP      G+ D
Sbjct: 22  PSWQVEEALLQEADDRRPQW-IIGCDEVGRGCLAGPVMVGACLFRAEDIPLLPIPAGLKD 80

Query: 60  SKKISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKA-----------TLDAIYHA 107
           SK ++ KKRE L + + + +A  ++ S  ++ ID + I +A            +  +  A
Sbjct: 81  SKLLTPKKRESLLDPLRAWAAGTAVGSCDNRGIDSYGIMEALGAAAIQAIDQAVFGLIGA 140

Query: 108 VENLQVIP-----------RSALI-DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKV 155
            + + VI            RS L    R  P+D+      V+KGD     +A AS+IAKV
Sbjct: 141 GDRVAVILDGPYDYISPAFRSLLAPQARIDPDDM--TVTTVVKGDRRCACVAGASVIAKV 198

Query: 156 TRDRLMRIAHKKYPD---YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           TRDR M     ++P+   Y +  + GY +A+H++ IKE+GPS  HRL++
Sbjct: 199 TRDRYMVDLADRHPEWEAYAWRKNKGYGSAEHREAIKEQGPSPYHRLSW 247


>gi|152965373|ref|YP_001361157.1| ribonuclease H [Kineococcus radiotolerans SRS30216]
 gi|189043607|sp|A6W7V4|RNH2_KINRD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|151359890|gb|ABS02893.1| Ribonuclease H [Kineococcus radiotolerans SRS30216]
          Length = 262

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 102/219 (46%), Gaps = 26/219 (11%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKK 67
           P   LE          VAG+DEVGRG+LAGPV V  +++D      P G+ DSK ++   
Sbjct: 10  PSLRLERQFLRAGHALVAGVDEVGRGSLAGPVSVGVLVVDAATRTAPTGLRDSKLLTPAA 69

Query: 68  REELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR--- 123
           RE L  K+   A+ S +  A    ID   I  A   A   A+  L V P   ++DG    
Sbjct: 70  REALAPKVRRWAVASAVGHAEPGEIDAVGIVAALRLAGRRALAQLPVPPDLVILDGNHDW 129

Query: 124 -SIPED----------------LPCQAFAV---IKGDSISLSIAAASIIAKVTRDRLMRI 163
            S P +                LPC A AV   +K D    ++A AS++AK TRD LM  
Sbjct: 130 LSDPREPSLLDALDGLGDPAAGLPCPAPAVTTRVKADVTCAAVAGASVLAKTTRDALMTA 189

Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            H+++P YG+  + GY    H + +   G    HR ++R
Sbjct: 190 RHEEFPHYGWAGNKGYSAPDHLEALAAHGACPQHRRSWR 228


>gi|303232810|ref|ZP_07319495.1| ribonuclease HII [Atopobium vaginae PB189-T1-4]
 gi|302481296|gb|EFL44371.1| ribonuclease HII [Atopobium vaginae PB189-T1-4]
          Length = 271

 Score =  101 bits (252), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/177 (38%), Positives = 101/177 (57%), Gaps = 3/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84
           V G+DEVGRG LAGP+ V A++L+     +G+NDSK++S + R EL  +I   A  +++ 
Sbjct: 91  VIGVDEVGRGPLAGPLSVGAVVLNDEPCIWGLNDSKQLSSRTRSELAARIRKEARAVAVV 150

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
                 ID+  I  A  +A+  A+E + + P + LIDG   P  +      ++KGD    
Sbjct: 151 HIPPAVIDEKGISCALKEAMRTAIERIDIAPTAVLIDGN--PVHVHPLEQTIVKGDCKIA 208

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +IAAASI+AKV RD  M     +YP Y F  + GY +++H   IK  G S IHR +F
Sbjct: 209 AIAAASIVAKVERDAYMSSISDQYPQYHFAQNKGYGSSEHIHAIKTYGLSAIHRKSF 265


>gi|113953937|ref|YP_729607.1| ribonuclease HII [Synechococcus sp. CC9311]
 gi|122945826|sp|Q0ID65|RNH2_SYNS3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|113881288|gb|ABI46246.1| ribonuclease HII [Synechococcus sp. CC9311]
          Length = 197

 Score =  101 bits (252), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 106/192 (55%), Gaps = 17/192 (8%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-I 80
           +AG+DEVGRG L GPV  AA++L  +        G+ DSK ++  +R  L   I + A  
Sbjct: 9   IAGVDEVGRGCLFGPVFAAAVVLSDHAAEHLQAAGLTDSKALTPSRRAALVPLIEAHAHA 68

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF-----A 135
             +  +S + +D+  I  AT  A+  A++ L   P+  L+DG      LP + +      
Sbjct: 69  WGLGQSSARAVDRDGIRSATEQAMLCALQRLPCRPQLVLVDG-----VLPLRLWEGSQRT 123

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           +++GDS   +IAAAS++AK  RD L+R    ++P YG + H GY TA+H+  +   GP+ 
Sbjct: 124 IVRGDSSHAAIAAASVLAKEARDALIRRLSNRFPGYGLERHAGYGTAQHRAALLACGPTP 183

Query: 196 IHRLTFRPLRNL 207
           +HR +F  LR L
Sbjct: 184 LHRHSF--LRKL 193


>gi|326776139|ref|ZP_08235404.1| Ribonuclease H [Streptomyces cf. griseus XylebKG-1]
 gi|326656472|gb|EGE41318.1| Ribonuclease H [Streptomyces cf. griseus XylebKG-1]
          Length = 236

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 105/180 (58%), Gaps = 4/180 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRGA AGPV V A +      P G+ DSK ++ ++R E+   + S     ++ 
Sbjct: 23  VAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLLTPRRRAEIDPVLRSWVTAHALG 82

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS Q ID   +  A   A   A+E L V P + ++DG+     +P +   VIKGD   +
Sbjct: 83  DASPQEIDDLGMTAALRLAAVRALEGLPVRPDAVILDGKHDYLGVPWKVRTVIKGDQSCI 142

Query: 145 SIAAASIIAKVTRDRLMR---IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           ++AAAS+IAKV RDR+M     A +   D+ F ++ GYP+  H+  ++E+GP+  HRL++
Sbjct: 143 AVAAASVIAKVHRDRMMAELGAASEDCADFDFGANAGYPSPVHRAALEERGPTAHHRLSW 202


>gi|300854482|ref|YP_003779466.1| putative ribonuclease HII [Clostridium ljungdahlii DSM 13528]
 gi|300434597|gb|ADK14364.1| predicted ribonuclease HII [Clostridium ljungdahlii DSM 13528]
          Length = 285

 Score =  101 bits (251), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/188 (42%), Positives = 111/188 (59%), Gaps = 9/188 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN-----NIPFGINDSKKISHKKREELYEKITSSAI 80
            AG+DEVGRG LAGP+   A+IL+ N      +  GI DSKK++ K+R EL + I   A+
Sbjct: 100 TAGVDEVGRGPLAGPIAAGAVILNLNYNEDRELILGIKDSKKLTPKRRCELAKVIKERAL 159

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             +I+  ++  IDK  I     + +  AVE L++    AL DG ++ ++L      VIKG
Sbjct: 160 AYNIAVINNIEIDKRGISWCNNEVLKRAVEGLKLPVTMALSDGYAV-KNLSTNNEFVIKG 218

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D+ S SIAAASIIAKV RD LM      Y +Y F+ + GY T  H + IK+ G   IHR+
Sbjct: 219 DTKSASIAAASIIAKVYRDSLMEEYSHLYTNYKFEQNSGYGTKDHIESIKKYGICKIHRV 278

Query: 200 TFRPLRNL 207
           +F  L+N+
Sbjct: 279 SF--LKNI 284


>gi|307720133|ref|YP_003891273.1| Ribonuclease H [Sulfurimonas autotrophica DSM 16294]
 gi|306978226|gb|ADN08261.1| Ribonuclease H [Sulfurimonas autotrophica DSM 16294]
          Length = 182

 Score =  100 bits (250), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/186 (38%), Positives = 96/186 (51%), Gaps = 18/186 (9%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82
           M  + GIDE GRG LAG +V+A  IL  +    G+NDSKK++ KKRE LYE I  +A   
Sbjct: 1   MGVLCGIDEAGRGPLAGDLVMAGCILHVS--VDGLNDSKKLTAKKREALYELIVENASYH 58

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV------ 136
           I   S   ID + I       +   + NL+      L DG         Q + V      
Sbjct: 59  IVKFSAHDIDNNGISACLKKGLIDILNNLK--ADKYLFDGN--------QTYGVKNLATM 108

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           ++ D     ++AASI+AKVT D  +  A KKYP+Y F+ H GY T  H  +IK+ G   I
Sbjct: 109 VQADRKIAEVSAASILAKVTHDVDILEAAKKYPEYQFEKHKGYGTKLHVAMIKKYGYCEI 168

Query: 197 HRLTFR 202
           HR T++
Sbjct: 169 HRKTYK 174


>gi|118475400|ref|YP_891226.1| ribonuclease HII [Campylobacter fetus subsp. fetus 82-40]
 gi|118414626|gb|ABK83046.1| ribonuclease HII [Campylobacter fetus subsp. fetus 82-40]
          Length = 189

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 97/187 (51%), Gaps = 16/187 (8%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELY---EKI 75
           M  + GIDE GRGALAG +VVA  +  P      I  G++DSKK++ +KREE++   EK+
Sbjct: 1   MAKICGIDEAGRGALAGELVVAGCVFKPKFKKEIIKLGLSDSKKLTEQKREEIFLNLEKM 60

Query: 76  TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF- 134
           +   ++   +     I   +  +  L+ I         I      DG     D   +   
Sbjct: 61  SDYLVVYFRNTIVDKIGLSDCLRRALNVIKMHFNECNFI-----YDGNC---DYGVKNIK 112

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            ++K DS    ++AASIIAKV+RDR MR   K YPD+G+  H GY    H + +K+ G +
Sbjct: 113 TIVKADSSVPQVSAASIIAKVSRDRQMRRFDKIYPDFGYAKHKGYGVKAHIEALKQHGSN 172

Query: 195 CIHRLTF 201
            + RL+F
Sbjct: 173 ELTRLSF 179


>gi|93006331|ref|YP_580768.1| ribonuclease H [Psychrobacter cryohalolentis K5]
 gi|122415238|sp|Q1QAL9|RNH2_PSYCK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|92394009|gb|ABE75284.1| RNase HII [Psychrobacter cryohalolentis K5]
          Length = 286

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 106/219 (48%), Gaps = 43/219 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIIL----------DP-NNIPFGI-NDSKKISHKKREELYEKI 75
           G+DE GRG L G V VA+ IL           P  + P  I  DSK++S KKR+ LY  +
Sbjct: 65  GVDEAGRGPLLGSVNVASAILPRAWSGLIEGQPLKDTPLSILTDSKQLSEKKRDMLYPLV 124

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAI------------YH---AVENLQVIPRSAL 119
              AI   I+      ID+ NI +AT+  +            YH     +++  +    L
Sbjct: 125 QQHAIGYVIADIPAAVIDQVNILQATMLGMRLCTEVMLEVIAYHLNDMAQDVHQLHAEVL 184

Query: 120 IDGRSIPE-------------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166
            DG   PE              + CQA+  IKGD+   SIAAASI+AKV+RD+ M     
Sbjct: 185 FDGNRCPELNYARLVELGVEEKVDCQAW--IKGDARHTSIAAASILAKVSRDKTMYALDA 242

Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           ++P+YG   H GYPT  H + I+  G    HR +F P+R
Sbjct: 243 QHPEYGIAKHKGYPTRAHMEAIETYGVLAAHRRSFAPVR 281


>gi|152993838|ref|YP_001359559.1| ribonuclease HII [Sulfurovum sp. NBC37-1]
 gi|189043667|sp|A6QCJ3|RNH2_SULNB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|151425699|dbj|BAF73202.1| ribonuclease HII [Sulfurovum sp. NBC37-1]
          Length = 188

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 70/188 (37%), Positives = 99/188 (52%), Gaps = 26/188 (13%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAIISI 83
           P+ GIDE GRG LAG +V+A ++L     P  G+ DSKK++ K+RE LY  +  +A   I
Sbjct: 7   PLCGIDEAGRGPLAGALVMAGVVLKK---PIDGLMDSKKLTEKRREALYTIVLENAEYHI 63

Query: 84  SSASHQYIDKHNIHKAT---LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV---- 136
            S S + +D   I K     L +I +A++  +      L DG S         F V    
Sbjct: 64  VSFSAKEVDDLGISKCLQKGLQSIQNALDGCKY-----LFDGNS--------TFGVDNVS 110

Query: 137 --IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
             +K D     ++AASI+AKVTRDR M    + YP+YGF+ H GY T  H + + +    
Sbjct: 111 TMVKADDKVPEVSAASILAKVTRDREMIKMAEIYPEYGFEKHKGYGTKAHIEALMKYDRC 170

Query: 195 CIHRLTFR 202
            IHR +FR
Sbjct: 171 EIHRRSFR 178


>gi|302554616|ref|ZP_07306958.1| ribonuclease HII [Streptomyces viridochromogenes DSM 40736]
 gi|302472234|gb|EFL35327.1| ribonuclease HII [Streptomyces viridochromogenes DSM 40736]
          Length = 233

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 70/177 (39%), Positives = 104/177 (58%), Gaps = 1/177 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84
           VAG+DEVGRGA AGPV V A I      P G+ DSK ++ K+R EL E + T     ++ 
Sbjct: 23  VAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLLTIKRRTELAEVLRTWVTSFALG 82

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID+  +  A   A   A++ L V P + ++DG+      P +   VIKGD   +
Sbjct: 83  HASPEEIDELGMTAALRLAACRALDALPVRPDAVILDGKHDYLGAPWRVRTVIKGDQSCV 142

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           ++AAAS+IAKV RD++M      + D+GF  + GYP+  H+  + E+GP+  HRL++
Sbjct: 143 AVAAASVIAKVQRDKMMAELGIDHADFGFADNAGYPSPVHKAALAERGPTPYHRLSW 199


>gi|29828995|ref|NP_823629.1| ribonuclease HII [Streptomyces avermitilis MA-4680]
 gi|39932356|sp|Q82KF0|RNH2_STRAW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|29606100|dbj|BAC70164.1| putative ribonuclease HII [Streptomyces avermitilis MA-4680]
          Length = 233

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/186 (39%), Positives = 109/186 (58%), Gaps = 7/186 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR----EELYEKITSSAII 81
           +AG+DEVGRGA AGPV V A I      P G+ DSK ++ K+R    EEL + +TS A+ 
Sbjct: 23  IAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLLTVKRRTVLAEELRKWVTSYAL- 81

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
               AS + ID   +  A   A   A+E L V P + ++DG+      P +   VIKGD 
Sbjct: 82  --GHASPEEIDALGMTAALRLAAVRALEALPVRPDAVILDGKHDYLGSPWKVRTVIKGDQ 139

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             +++AAAS+IAKV RD++M     ++ D+GF ++ GYP+  H+  + E+GP+  HRL++
Sbjct: 140 SCVAVAAASVIAKVQRDKMMAELGIEHADFGFAANAGYPSPVHKAALAERGPTPYHRLSW 199

Query: 202 RPLRNL 207
             L  L
Sbjct: 200 AYLDAL 205


>gi|290956942|ref|YP_003488124.1| ribonuclease HII [Streptomyces scabiei 87.22]
 gi|260646468|emb|CBG69565.1| putative ribonuclease HII [Streptomyces scabiei 87.22]
          Length = 233

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/177 (38%), Positives = 104/177 (58%), Gaps = 1/177 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           VAG+DEVGRGA AGPV V A +      P G+ DSK ++ K+RE L E++       ++ 
Sbjct: 23  VAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLLTIKRRESLSEELLKWVTSHALG 82

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID   +  A   A   A+E L V P + ++DG+      P +   VIKGD   +
Sbjct: 83  HASPEEIDDLGMTAALRLAAVRALEALPVRPDAVILDGKHDYLGSPWRVRTVIKGDQSCV 142

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           ++AAAS+IAKV RD++M      + D+GF ++ GYP+  H+  + E+GP+  HRL++
Sbjct: 143 AVAAASVIAKVQRDKMMAELGVDHADFGFAANAGYPSPVHKAALAERGPTPYHRLSW 199


>gi|284045128|ref|YP_003395468.1| ribonuclease H [Conexibacter woesei DSM 14684]
 gi|283949349|gb|ADB52093.1| Ribonuclease H [Conexibacter woesei DSM 14684]
          Length = 226

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/197 (39%), Positives = 108/197 (54%), Gaps = 9/197 (4%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-------FGINDSKKISHK 66
           L A  R+     VAG DE GRG LAGP+V AA++ D   I          +NDSK+ + +
Sbjct: 22  LFAFDRDLGARFVAGADEAGRGCLAGPLVAAAVMFDYERITRSDLRALSALNDSKQQTAE 81

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +RE +Y  I   A  +++ S     ID+  +H   L A+  A+  +       L DG  +
Sbjct: 82  RREAIYPVILRVATRVAVISRCAPGIDRRGLHVTNLAALRDALARVACDGCICLSDGFRV 141

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
             DL     AVI GD+ S SIAAAS++AKVTRDR M  A   +P + F SHVGY T +H+
Sbjct: 142 A-DLGHDQRAVIGGDARSASIAAASVVAKVTRDRFMHRADVLHPGWEFASHVGYATPEHR 200

Query: 186 QVIKEKGPSCIHRLTFR 202
             I+  G + +HRL+F+
Sbjct: 201 AAIERLGITPLHRLSFQ 217


>gi|228470569|ref|ZP_04055426.1| ribonuclease HII [Porphyromonas uenonis 60-3]
 gi|228307696|gb|EEK16672.1| ribonuclease HII [Porphyromonas uenonis 60-3]
          Length = 204

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 105/182 (57%), Gaps = 4/182 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISIS 84
            G DE GRGALAG +  AA+I  P+ +    + DSKK++ K+REEL   I   A   ++ 
Sbjct: 15  CGCDEAGRGALAGDLYAAAVIW-PDTLDHPHLRDSKKLTAKQREELRHFIEEHATAWAVG 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-PEDLPCQAFAVIKGDSIS 143
            A+ Q I + NI  A++ A+  A+E L   P   LIDG    P     +   ++KGD   
Sbjct: 74  VATVQEIQQINILHASMLAMQRAIEALSCTPERLLIDGNYYDPRPDEVEYHTIVKGDDRY 133

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           L+IAAASI+AK  RD  M     +YP YG++ + GYPTA+H++ I++ G   +HR  F+ 
Sbjct: 134 LAIAAASILAKTHRDEYMTQQALEYPHYGWEQNKGYPTAQHREGIRQHGSCPLHRQGFQL 193

Query: 204 LR 205
           L+
Sbjct: 194 LQ 195


>gi|84498367|ref|ZP_00997164.1| ribonuclease HII [Janibacter sp. HTCC2649]
 gi|84381867|gb|EAP97750.1| ribonuclease HII [Janibacter sp. HTCC2649]
          Length = 261

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 110/212 (51%), Gaps = 18/212 (8%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHK 66
           +P   +E  ++      +AG+DEVGRGALAGPV V  +++D    + P G+ DSK +   
Sbjct: 9   KPSLRVERALQRDGYRLLAGMDEVGRGALAGPVSVGVVVIDETCRSAPQGVRDSKLLQPS 68

Query: 67  KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-- 123
            RE +  +I   A   ++  AS   ID+  I  A   A   A+ +L V+P   ++DG   
Sbjct: 69  ARELMVPRIRRWAFAHAVGHASPAEIDEVGIIAALRLAGRRALASLDVVPDLVILDGNHD 128

Query: 124 --SIPEDLPCQAFA-----------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170
             + P+++   AF            +IK D    S+A+AS++AKV RDR+M      +  
Sbjct: 129 WLTAPDEVGLLAFTSDDVHTPPVTTMIKADMKCSSVASASVLAKVERDRMMVDLAPDHAA 188

Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           Y ++ + GY   +H   ++E GP+ +HR ++R
Sbjct: 189 YRWELNKGYAAPEHMDALREHGPTELHRRSWR 220


>gi|123969237|ref|YP_001010095.1| ribonuclease HII and HIII [Prochlorococcus marinus str. AS9601]
 gi|166226638|sp|A2BT77|RNH2_PROMS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|123199347|gb|ABM70988.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. AS9601]
          Length = 205

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 100/179 (55%), Gaps = 5/179 (2%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS-HKKREELYEKITSSAIIS 82
           GIDEVG+GA+ GPV  AA++L   N      FG+ DSKK++  K++  L + +  S+   
Sbjct: 20  GIDEVGKGAIFGPVFAAAVVLTEKNKFILKQFGVTDSKKLTPKKRKLLLPKILLLSSDYG 79

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I  +S + IDK  I  AT  ++  A+  L+  P   +IDG  +          ++ GDS 
Sbjct: 80  IGQSSAREIDKLGIRVATELSMIRALRKLKEKPSELIIDGPLLLRPWNGIQKNIVSGDSK 139

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            +SIA+ASI+AKV+RD LM    K Y  Y    + GY T +H  +IK+ G + +HR +F
Sbjct: 140 FISIASASIVAKVSRDNLMERLEKNYSGYLIFKNKGYGTREHLSLIKKNGITELHRKSF 198


>gi|294631838|ref|ZP_06710398.1| ribonuclease HII [Streptomyces sp. e14]
 gi|292835171|gb|EFF93520.1| ribonuclease HII [Streptomyces sp. e14]
          Length = 233

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/177 (37%), Positives = 105/177 (59%), Gaps = 1/177 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRGA AGPV V A +      P G+ DSK ++ K+R EL  ++       ++ 
Sbjct: 23  IAGVDEVGRGAWAGPVTVCAAVTGLRRPPVGLTDSKLLTVKRRNELDAELRKWVTAYALG 82

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID   +  A   A   A+E L V P + ++DG+      P +   VIKGD   +
Sbjct: 83  HASPEEIDDLGMTAALRLAASRALEALPVRPDAVILDGKHDYLGAPWKVRTVIKGDRSCV 142

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           ++AAAS+IAKV RD++M     ++ D+GF ++ GYP+  H+  ++E+GP+  HRL++
Sbjct: 143 AVAAASVIAKVHRDKMMAELGSEHADFGFAANAGYPSPVHKAALEERGPTPYHRLSW 199


>gi|328885537|emb|CCA58776.1| Ribonuclease HII [Streptomyces venezuelae ATCC 10712]
          Length = 236

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 100/180 (55%), Gaps = 4/180 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRGA AGPV V A +      P G+ DSK I+ K+R  L  ++       ++ 
Sbjct: 23  VAGVDEVGRGAWAGPVTVCAAVTGLRRAPEGLTDSKLITPKRRTTLAAELEGWVTAYALG 82

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS Q ID+  +  A   A   A+E L V P + ++DG+      P Q   VIKGD   +
Sbjct: 83  DASPQEIDELGMTAALRLAAVRALEGLPVRPDAVILDGKHDYLGGPWQVRTVIKGDQSCI 142

Query: 145 SIAAASIIAKVTRDRLM---RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           ++AAAS+IAKV RD  M     +   Y  Y F ++ GYP+  H+  ++E GP+  HRL++
Sbjct: 143 AVAAASVIAKVRRDAFMAELETSAGDYAAYAFGANAGYPSPVHKAALEELGPTPHHRLSW 202


>gi|229140479|ref|ZP_04269034.1| Ribonuclease [Bacillus cereus BDRD-ST26]
 gi|228643040|gb|EEK99316.1| Ribonuclease [Bacillus cereus BDRD-ST26]
          Length = 147

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 95/146 (65%), Gaps = 3/146 (2%)

Query: 63  ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           +S  KRE  Y++I + AI I +   S Q ID+ NI++AT  A+  AV NL   P+  LID
Sbjct: 1   MSEAKRERFYDEIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLID 60

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
              +P  +P    ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T
Sbjct: 61  AMKLPTPIP--QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGT 118

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207
            +H + I+  G    HR +F P++++
Sbjct: 119 KQHLEAIEAHGILEEHRKSFAPIKDM 144


>gi|254424377|ref|ZP_05038095.1| ribonuclease HII [Synechococcus sp. PCC 7335]
 gi|196191866|gb|EDX86830.1| ribonuclease HII [Synechococcus sp. PCC 7335]
          Length = 199

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/179 (40%), Positives = 104/179 (58%), Gaps = 6/179 (3%)

Query: 29  IDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELYEKITSSAIISI 83
           +DEVGRGAL GPVV AA+I+ P++     +  G+ DSK +S K+R +L  +I S     I
Sbjct: 1   MDEVGRGALFGPVVAAAVIV-PDSAIASLVSAGVTDSKALSAKRRTQLAVEIRSLTAFGI 59

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             ++   ID+ NI +A+L A+  A+  L  +P   LIDG     DLP +   +++GD   
Sbjct: 60  GLSTVYEIDRINILQASLLAMRRAIFQLPWMPDKCLIDGNQRIFDLPIEQETIVRGDQSV 119

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           L+IAAASI+AKV RD L+    + YP Y   S+ GY +A H+  I   G    HR +F+
Sbjct: 120 LAIAAASILAKVWRDDLVSRLDRHYPGYDLVSNKGYGSANHRAGIARYGICRQHRQSFK 178


>gi|329939992|ref|ZP_08289274.1| ribonuclease HII [Streptomyces griseoaurantiacus M045]
 gi|329300818|gb|EGG44714.1| ribonuclease HII [Streptomyces griseoaurantiacus M045]
          Length = 233

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/177 (37%), Positives = 104/177 (58%), Gaps = 1/177 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84
           +AG+DEVGRGA AGPV V A +      P G+ DSK ++ K+R EL E + T     ++ 
Sbjct: 23  IAGVDEVGRGAWAGPVTVCAAVTGLRRPPPGLTDSKLLTVKRRTELAETLRTWVTSYALG 82

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS Q ID+  +  A   A   A+E L V P + ++DG+      P +   VIKGD   +
Sbjct: 83  HASPQEIDERGMTAALRLAAVRALEALPVRPDAVILDGKHDYLGSPWKVRTVIKGDQSCV 142

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           ++AAAS++AKV RD++M      + D+ F ++ GYP+  H+  ++ +GP+  HRL++
Sbjct: 143 AVAAASVLAKVQRDKMMAELGVDHADFAFAANAGYPSPVHRAALEVRGPTPYHRLSW 199


>gi|71065472|ref|YP_264199.1| ribonuclease HII [Psychrobacter arcticus 273-4]
 gi|97189215|sp|Q4FT93|RNH2_PSYA2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|71038457|gb|AAZ18765.1| probable ribonuclease HII [Psychrobacter arcticus 273-4]
          Length = 287

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 106/220 (48%), Gaps = 44/220 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILDP-----------NNIPFGI-NDSKKISHKKREELYEKI 75
           G+DE GRG L G V VA+ IL              + P  I  DSK++S KKR+ LY  +
Sbjct: 65  GVDEAGRGPLLGSVNVASAILPRAWSGLIEAQLLKDTPLSILTDSKQLSEKKRDLLYPLV 124

Query: 76  TSSAI-ISISSASHQYIDKHNIHKAT-----------LDAIYH----AVENLQVIPRSAL 119
              AI   I+      ID+ NI +AT           L+ I H      +++  +  + L
Sbjct: 125 QQYAIGYIIADIPAAVIDQINILQATMLGMRLCTEILLEVIAHHLNDMAQDIHQLQTAVL 184

Query: 120 IDGRSIPE--------------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165
            DG   PE               + CQA+  +KGD+   SIAAASI+AKV+RD+ M    
Sbjct: 185 FDGNRCPELNYTSLAQLGIKESMIDCQAW--VKGDARHTSIAAASILAKVSRDKTMYALD 242

Query: 166 KKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
            ++P+YG   H GYPT  H + I+  G    HR +F P+R
Sbjct: 243 TEHPEYGIAKHKGYPTRAHMEAIETYGVLSAHRRSFAPVR 282


>gi|328955473|ref|YP_004372806.1| RNase HII [Coriobacterium glomerans PW2]
 gi|328455797|gb|AEB06991.1| RNase HII [Coriobacterium glomerans PW2]
          Length = 262

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 109/194 (56%), Gaps = 5/194 (2%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           R  +E++  +  + +  V G+DEVGRG++AGP+ V A+ L P  I +G+NDSK++S  KR
Sbjct: 62  RAMYEMQTRLGGRGV--VIGVDEVGRGSVAGPLTVCAVCLPPTPIIWGVNDSKRLSAAKR 119

Query: 69  EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           ++L  +I   A  I I       ID+  +  A   A+  AV +  + P   L+DG   P 
Sbjct: 120 QKLAARIERIARAIGICHIPACDIDRCGMGAALRHAVRLAVADCGLEPDCVLMDGN--PL 177

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
               +   V+ GD++  SIAAASI+AKVTRD LM      YP Y   +  GY + +H + 
Sbjct: 178 GAVERERCVVHGDALVASIAAASIVAKVTRDDLMIELDSTYPGYHLAASKGYASPEHIEA 237

Query: 188 IKEKGPSCIHRLTF 201
           I+E+G +  HR +F
Sbjct: 238 IRERGLTPEHRASF 251


>gi|308235361|ref|ZP_07666098.1| ribonuclease HII [Gardnerella vaginalis ATCC 14018]
 gi|311115100|ref|YP_003986321.1| ribonuclease HII [Gardnerella vaginalis ATCC 14019]
 gi|310946594|gb|ADP39298.1| ribonuclease HII [Gardnerella vaginalis ATCC 14019]
          Length = 227

 Score = 99.0 bits (245), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 110/220 (50%), Gaps = 28/220 (12%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-----PFGINDSKKIS 64
           P F  E  + +     V G+DEVGRG+LAGPV+V A +   + I     P G+ DSK I+
Sbjct: 5   PSFNFEQDLLKSGFDWVIGLDEVGRGSLAGPVMVGAALFGADKINSGYFPDGLADSKLIN 64

Query: 65  HKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR------- 116
             KRE L E + +     ++ S +++ ID+  I  A   A   A+ ++Q   R       
Sbjct: 65  AHKREGLLEPLENWCDAFAVGSCTNREIDEWGISYALGVAAIRAISDVQNSMRYKLENAH 124

Query: 117 -SALIDG-----------RSIPE-DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163
            +A++DG              P  D P +   ++K D    S++AAS+IAKVTRD LM  
Sbjct: 125 IAAILDGPFNYIGKVSGTFDAPSIDFPVKVHTLVKADQKCASVSAASVIAKVTRDSLMTS 184

Query: 164 AHK--KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
                KY  Y +  + GY +  H+  I E GPS +HR+++
Sbjct: 185 LSDDPKYKIYDWAHNKGYGSKSHRAAILEYGPSDLHRISW 224


>gi|221194830|ref|ZP_03567887.1| putative ribonuclease HII [Atopobium rimae ATCC 49626]
 gi|221185734|gb|EEE18124.1| putative ribonuclease HII [Atopobium rimae ATCC 49626]
          Length = 263

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/177 (39%), Positives = 102/177 (57%), Gaps = 3/177 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + G+DEVGRG +AGP+ V A++L    +  G+NDSKK+S  +RE +  +I   A+ I ++
Sbjct: 78  IVGVDEVGRGPVAGPLTVGAVVLSDTPLIDGLNDSKKLSAARRETIAARIAKVALAIGMA 137

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
                 ID+  +  A   A+  A+E   V P   LIDG   P  +  +   ++KGD+   
Sbjct: 138 FIEPAEIDEIGMSAALRKAMEIAIEQTGVDPDCVLIDGN--PVHVHPREKTIVKGDAKIA 195

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SIAAASI+AKV+RD LM     +YP Y F  + GY +A H + I + G + IHR TF
Sbjct: 196 SIAAASIVAKVSRDALMVDYDAQYPAYHFAQNKGYASADHIKAIADYGLTPIHRTTF 252


>gi|148652730|ref|YP_001279823.1| ribonuclease H [Psychrobacter sp. PRwf-1]
 gi|189043644|sp|A5WDY2|RNH2_PSYWF RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|148571814|gb|ABQ93873.1| Ribonuclease H [Psychrobacter sp. PRwf-1]
          Length = 302

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 109/234 (46%), Gaps = 55/234 (23%)

Query: 28  GIDEVGRGALAGPVVVAAIILDP-----------NNIPFGI-NDSKKISHKKREELYEKI 75
           G+DEVGRG L G VVVAA IL              + P  I  DSKK++ +KRE+L+E +
Sbjct: 57  GVDEVGRGPLYGSVVVAAAILPKAWSGETEVGLLQDTPLAILTDSKKLTERKREKLFEPV 116

Query: 76  TSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQV----IPRSA------------ 118
              A+   +       ID+ NI +AT+  +  A E L V    + R A            
Sbjct: 117 KQHALAYLVVEVPAGVIDEINILQATILGMRVACEQLMVEITKVWRDASELPTAPSTPLG 176

Query: 119 ---LIDGRSIPE--------------DLPCQ---------AFAVIKGDSISLSIAAASII 152
              LIDG  +P+              D+            A A +KGD+   +IAAAS++
Sbjct: 177 FKLLIDGNKVPDLDEARLATHGICLADMTVTQPAGMVKFCAEAWVKGDARHNAIAAASVL 236

Query: 153 AKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           AKV RDR +     +YP YG + H GYPT  H + I   G    HR +F+P++ 
Sbjct: 237 AKVYRDRQLIADGARYPGYGLEGHKGYPTKAHVEAIARLGVLPEHRRSFKPVQQ 290


>gi|282862315|ref|ZP_06271377.1| Ribonuclease H [Streptomyces sp. ACTE]
 gi|282562654|gb|EFB68194.1| Ribonuclease H [Streptomyces sp. ACTE]
          Length = 236

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/186 (38%), Positives = 103/186 (55%), Gaps = 4/186 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRGA AGPV V A +      P G+ DSK IS K+R EL   + S      + 
Sbjct: 23  VAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLISPKRRAELAPVLESWVTAFGLG 82

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID   +  A   A   A++ L V P + ++DG+      P +   VIKGD   +
Sbjct: 83  HASPEEIDDLGMTAALRLAAVRALDALPVRPDAVILDGKHDYLGDPWKVRTVIKGDQSCI 142

Query: 145 SIAAASIIAKVTRDRLMR---IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           ++AAAS+IAKV RD +M        +Y D+ F ++ GYP+  H+  ++E GP+  HRL++
Sbjct: 143 AVAAASVIAKVRRDTMMAELGADSDRYADFAFGANAGYPSPVHRAALEEWGPTPHHRLSW 202

Query: 202 RPLRNL 207
             L  L
Sbjct: 203 SYLDAL 208


>gi|291436842|ref|ZP_06576232.1| ribonuclease HII [Streptomyces ghanaensis ATCC 14672]
 gi|291339737|gb|EFE66693.1| ribonuclease HII [Streptomyces ghanaensis ATCC 14672]
          Length = 233

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/177 (38%), Positives = 103/177 (58%), Gaps = 1/177 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRGA AGPV V A I      P G+ DSK ++ K+R EL E + S     ++ 
Sbjct: 23  IAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLLTLKRRTELAETLRSWVTSYALG 82

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID   +  A   A   A+E L V P + ++DG+      P +   VIKGD   +
Sbjct: 83  HASPEEIDVLGMTAALRLAAVRALEALPVRPDAVILDGKHDYLGTPWKVRTVIKGDQSCV 142

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           ++AAAS+IAKV RD++M      + D+GF  + GYP+  H+  ++ +GP+  HRL++
Sbjct: 143 AVAAASVIAKVQRDKMMAELGVDHADFGFADNAGYPSPVHRAALEVRGPTPHHRLSW 199


>gi|239928517|ref|ZP_04685470.1| ribonuclease HII [Streptomyces ghanaensis ATCC 14672]
          Length = 236

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/177 (38%), Positives = 103/177 (58%), Gaps = 1/177 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRGA AGPV V A I      P G+ DSK ++ K+R EL E + S     ++ 
Sbjct: 26  IAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLLTLKRRTELAETLRSWVTSYALG 85

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID   +  A   A   A+E L V P + ++DG+      P +   VIKGD   +
Sbjct: 86  HASPEEIDVLGMTAALRLAAVRALEALPVRPDAVILDGKHDYLGTPWKVRTVIKGDQSCV 145

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           ++AAAS+IAKV RD++M      + D+GF  + GYP+  H+  ++ +GP+  HRL++
Sbjct: 146 AVAAASVIAKVQRDKMMAELGVDHADFGFADNAGYPSPVHRAALEVRGPTPHHRLSW 202


>gi|325832929|ref|ZP_08165602.1| ribonuclease HII [Eggerthella sp. HGA1]
 gi|325485794|gb|EGC88258.1| ribonuclease HII [Eggerthella sp. HGA1]
          Length = 262

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/194 (36%), Positives = 103/194 (53%), Gaps = 14/194 (7%)

Query: 16  AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           A+  E+    + G+DEVGRG LAGP+ V A++L       G+NDSK++  + RE    +I
Sbjct: 65  ALAAERGDGVIVGLDEVGRGPLAGPLAVGAVVLPSEPFIEGLNDSKQVKPEARE----RI 120

Query: 76  TSSAIISISSASHQYIDKHNIHKATLDA--------IYHAVENLQVIPRSALIDGRSIPE 127
                    + + +Y++  +I    + A            +E + V P   L+DG   P 
Sbjct: 121 AVQVKAVAVAWTVEYVEASDIDACGMTASLALAFRRAIRRIEEVGVRPDVVLLDGN--PM 178

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            L  +   V+KGD    SIAAASI+AKV RD LM    ++YP+YGFD+  GY +A H + 
Sbjct: 179 RLDEREVNVVKGDGKCASIAAASIVAKVERDALMCRYAEEYPEYGFDACKGYASAAHIEA 238

Query: 188 IKEKGPSCIHRLTF 201
           IK  G + IHR TF
Sbjct: 239 IKRYGLTPIHRATF 252


>gi|302557990|ref|ZP_07310332.1| ribonuclease HII [Streptomyces griseoflavus Tu4000]
 gi|302475608|gb|EFL38701.1| ribonuclease HII [Streptomyces griseoflavus Tu4000]
          Length = 233

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 67/177 (37%), Positives = 102/177 (57%), Gaps = 1/177 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRGA AGPV V A +      P G+ DSK ++ K+R +L E +       ++ 
Sbjct: 23  VAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLLTVKRRTQLAETLRGWVTSYALG 82

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID   +  A   A   A+E L V P + ++DG+      P +   VIKGD   +
Sbjct: 83  HASPEEIDAMGMTAALRLAAGRALEALPVRPDAVILDGKHDYLGTPWRVRTVIKGDQSCV 142

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           ++AAAS+IAKV RD++M      + D+GF  + GYP+  H+  ++ +GP+  HRL++
Sbjct: 143 AVAAASVIAKVQRDKMMAELGIDHADFGFADNAGYPSPVHRAALEVRGPTPYHRLSW 199


>gi|313886392|ref|ZP_07820115.1| ribonuclease HII [Porphyromonas asaccharolytica PR426713P-I]
 gi|332300172|ref|YP_004442093.1| Ribonuclease H [Porphyromonas asaccharolytica DSM 20707]
 gi|312924168|gb|EFR34954.1| ribonuclease HII [Porphyromonas asaccharolytica PR426713P-I]
 gi|332177235|gb|AEE12925.1| Ribonuclease H [Porphyromonas asaccharolytica DSM 20707]
          Length = 204

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 106/182 (58%), Gaps = 4/182 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISIS 84
            G DE GRGALAG +  AA++  P+ +    + DSKK++ ++REEL   I   A   ++ 
Sbjct: 15  CGCDEAGRGALAGDLYAAAVVW-PDTLDHPHLRDSKKLTARQREELRLFIEEHATAWAVG 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-PEDLPCQAFAVIKGDSIS 143
            A+ Q I + NI  A++ A+  A+E L   P   LIDG    P     +   ++KGD   
Sbjct: 74  VATIQEIQQINILHASMLAMQRAIEALPCTPERLLIDGNYYDPRPDEVEYHTIVKGDDRY 133

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           L+IAAASI+AK  RD  M    ++YP YG++ + GYPTA+H++ I++ G   +HR  F+ 
Sbjct: 134 LAIAAASILAKTHRDAYMTQQAQEYPHYGWEQNKGYPTAQHREGIRQYGSCPLHRQGFQL 193

Query: 204 LR 205
           L+
Sbjct: 194 LQ 195


>gi|119963253|ref|YP_948173.1| ribonuclease HII [Arthrobacter aurescens TC1]
 gi|119950112|gb|ABM09023.1| putative ribonuclease HII [Arthrobacter aurescens TC1]
          Length = 256

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 110/214 (51%), Gaps = 22/214 (10%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAIILDPNNIPFGINDSKKISHKK 67
           P  ++E       +  +AG+DEVGRGALAGPV V  A + L+ + +   + DSK +  + 
Sbjct: 35  PTLDVERSFLSSGVRLLAGVDEVGRGALAGPVSVGIAVVNLENHGLLADVRDSKLLKPED 94

Query: 68  REELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGR 123
           R+ L   +   A+ S +  AS + ID+  I  A   A   A   +    + P   L+DG 
Sbjct: 95  RDRLEPLVREWAVASAVGHASSREIDQIGIIAALRLAGTRAWFEILAGGITPDVVLLDGS 154

Query: 124 -------------SIPEDLP-CQA--FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                          P+  P C+A     +K D   LS+AAAS++AKV RDR+M   H +
Sbjct: 155 HNWLSPDVQASLFDTPDSGPWCEAPVHTRVKADMSCLSVAAASVLAKVARDRIMVDLHSE 214

Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            P YG++ + GY T+ H+ VI+ +GPS  HR ++
Sbjct: 215 IPSYGWNVNKGYATSAHRDVIRLQGPSAHHRTSW 248


>gi|300869375|ref|ZP_07113962.1| Ribonuclease HII [Oscillatoria sp. PCC 6506]
 gi|300332602|emb|CBN59160.1| Ribonuclease HII [Oscillatoria sp. PCC 6506]
          Length = 178

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/177 (38%), Positives = 95/177 (53%), Gaps = 12/177 (6%)

Query: 41  VVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHN 95
           +V AA IL P  +      G+ DSK++S   R  L  KI + A+   I  AS + ID+ N
Sbjct: 1   MVAAACILPPEALEELTALGVRDSKQLSPAARSRLAVKIQAMAVDCQIGVASVREIDRIN 60

Query: 96  IHKATLDAIYHAVENLQVIPRSALIDG-RSIPE------DLPCQAFAVIKGDSISLSIAA 148
           I +A+L A+  A+  L  +P   LIDG + IP         P     +I+GD  SL IAA
Sbjct: 61  ILQASLLAMKRAILKLNTLPELCLIDGNQRIPNLVVPKAGYPYAQQTMIQGDRRSLVIAA 120

Query: 149 ASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           ASI+AKV RD L+     K+P+Y   ++ GY T KH+  ++  G S  HR +F P R
Sbjct: 121 ASIVAKVWRDELIVRMAVKFPEYDLTNNKGYGTPKHRLGLERYGVSPFHRTSFSPCR 177


>gi|308234480|ref|ZP_07665217.1| Ribonuclease H [Atopobium vaginae DSM 15829]
 gi|328944073|ref|ZP_08241538.1| ribonuclease HII [Atopobium vaginae DSM 15829]
 gi|327492042|gb|EGF23816.1| ribonuclease HII [Atopobium vaginae DSM 15829]
          Length = 270

 Score = 97.8 bits (242), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/180 (41%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84
           + G+DEVGRG LAGP+ VAA+IL      +G+NDSKK++  +RE L  +I + A  + I+
Sbjct: 89  IMGVDEVGRGPLAGPLAVAAVILPQEPHIWGLNDSKKLTSLERERLDTQIRAHARAVGIA 148

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI---PEDLPCQAFAVIKGDS 141
             S + ID+  I     + +  A+    V P   LIDG  I   P++       +IKGDS
Sbjct: 149 FTSPEDIDRFGIVSCLRETMKCAILQTGVEPDCVLIDGNPIHAHPKEK-----TLIKGDS 203

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
              SIAAASI+AKV RDRLM+     YP Y F  + GY +  H   IK  G S +HR +F
Sbjct: 204 RIASIAAASIVAKVARDRLMQDLDVCYPQYHFAENKGYGSKAHIDAIKTYGLSPVHRKSF 263


>gi|326403378|ref|YP_004283459.1| ribonuclease HII [Acidiphilium multivorum AIU301]
 gi|325050239|dbj|BAJ80577.1| ribonuclease HII [Acidiphilium multivorum AIU301]
          Length = 199

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 108/183 (59%), Gaps = 5/183 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKIS-HKKREELYEKITSSAII 81
           VAG+DEVGRG LAGPVV AA IL    P  I   I+DSK++S  ++   L   I S A I
Sbjct: 14  VAGVDEVGRGPLAGPVVAAAAILPADLPPEIAALIDDSKRLSPARREAALAALIESGAAI 73

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           S ++AS   I + NI +A+L A+  AV  L V P   L+DG+  P DLP     V+ GD 
Sbjct: 74  SAAAASVAEIARLNILQASLLAMRRAVARLAVRPDHVLVDGQVAP-DLPMPCTPVVGGDG 132

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +SLSIAAASI AK+ RDR M    ++YP YG+  + GY T  H+  I   G +  HR  F
Sbjct: 133 LSLSIAAASIAAKLVRDRAMSRLDRRYPGYGWARNSGYATKTHRDAILGLGITPHHRRGF 192

Query: 202 RPL 204
            PL
Sbjct: 193 GPL 195


>gi|320008134|gb|ADW02984.1| Ribonuclease H [Streptomyces flavogriseus ATCC 33331]
          Length = 236

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 103/182 (56%), Gaps = 8/182 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL---YEKITSSAIIS 82
           VAG+DEVGRGA AGPV V A +      P G+ DSK ++ K+R EL    EK  ++    
Sbjct: 23  VAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLLTPKRRAELAPTLEKWVTA--YG 80

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  AS Q ID   +  A   A   A++ L V P + ++DG+      P     VIKGD  
Sbjct: 81  LGHASPQEIDDVGMTAALRLAATRALDMLPVRPDAVILDGKHDYLGPPWNVRTVIKGDQS 140

Query: 143 SLSIAAASIIAKVTRDRLMR---IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
            +++AAAS+IAKV RD +M        +Y D+ F ++ GYP+  H+  ++E+GP+  HRL
Sbjct: 141 CIAVAAASVIAKVHRDTMMAELGAESGQYADFAFGANAGYPSPVHRAALEERGPTPHHRL 200

Query: 200 TF 201
           ++
Sbjct: 201 SW 202


>gi|213857938|ref|ZP_03384909.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 131

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/131 (44%), Positives = 76/131 (58%), Gaps = 2/131 (1%)

Query: 63  ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           +S K+R  LY++I   A+  S+  A    ID+ NI  AT+ A+  AV  L + P   LID
Sbjct: 1   MSEKRRLSLYDEIKEKALSWSLGRAEAHEIDELNILHATMLAMQRAVAGLHIAPEYVLID 60

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           G   PE LP  + AV+KGDS    I+AASI+AKVTRD  M      +P YGF  H GYPT
Sbjct: 61  GNRCPE-LPVPSMAVVKGDSRVAEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPT 119

Query: 182 AKHQQVIKEKG 192
           A H + + + G
Sbjct: 120 AFHLEKLAQYG 130


>gi|257791157|ref|YP_003181763.1| Ribonuclease H [Eggerthella lenta DSM 2243]
 gi|257475054|gb|ACV55374.1| Ribonuclease H [Eggerthella lenta DSM 2243]
          Length = 262

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/194 (36%), Positives = 102/194 (52%), Gaps = 14/194 (7%)

Query: 16  AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           A+  E+    + G+DEVGRG LAGP+ V A++L       G+NDSK++  + RE    +I
Sbjct: 65  ALAAERGDGVIVGLDEVGRGPLAGPLAVGAVVLPSEPFIEGLNDSKQVKPEARE----RI 120

Query: 76  TSSAIISISSASHQYIDKHNIHKATLDA--------IYHAVENLQVIPRSALIDGRSIPE 127
                    + + +Y++  +I    + A            +E   V P   L+DG   P 
Sbjct: 121 AVQVKAVAVAWTVEYVEASDIDACGMTASLALAFRRAIRRIEEAGVRPDVVLLDGN--PM 178

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            L  +   V+KGD    SIAAASI+AKV RD LM    ++YP+YGFD+  GY +A H + 
Sbjct: 179 RLDEREVNVVKGDGKCASIAAASIVAKVERDALMCRYAEEYPEYGFDACKGYASAAHIEA 238

Query: 188 IKEKGPSCIHRLTF 201
           IK  G + IHR TF
Sbjct: 239 IKRYGLTPIHRATF 252


>gi|332978396|gb|EGK15114.1| ribonuclease HII [Psychrobacter sp. 1501(2011)]
          Length = 308

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/236 (33%), Positives = 109/236 (46%), Gaps = 59/236 (25%)

Query: 28  GIDEVGRGALAGPVVVAAIIL----------DP-NNIPFGI-NDSKKISHKKREELYEKI 75
           GIDEVGRG L G VVV+  IL          +P  + P  I  DSKK++  KRE L+E I
Sbjct: 66  GIDEVGRGPLYGSVVVSGAILPCQWSAEIEQNPLQDTPLAILTDSKKLTEAKRERLFEPI 125

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQV--------------------- 113
              A+   I       ID+ NI +ATL  +  A E + +                     
Sbjct: 126 KQQALAYMIVEIPASVIDEVNILQATLMGMRLACEQIMIEMVQALQSNLDKSLEVEGFLD 185

Query: 114 --------IPRSALIDGRSIPEDLPCQ----------------AFAVIKGDSISLSIAAA 149
                   I  + LIDG  +P DL  Q                A A +KGD+   +IAAA
Sbjct: 186 IHSSSQNHIAFNLLIDGNKVP-DLDSQLLQHYNIGPELKHSVNAEAWVKGDARHSAIAAA 244

Query: 150 SIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           S++AKV+RDR +      +P YG + H GYPT  H + I++ G    HR +F+P++
Sbjct: 245 SVLAKVSRDRQLIKDGAAHPGYGLEGHKGYPTKAHIEAIQKLGVLPQHRRSFKPVQ 300


>gi|33864055|ref|NP_895615.1| ribonuclease HII [Prochlorococcus marinus str. MIT 9313]
 gi|39932296|sp|Q7V4Z5|RNH2_PROMM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|33635639|emb|CAE21963.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9313]
          Length = 218

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 101/186 (54%), Gaps = 15/186 (8%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII 81
           +AG+DEVGRG   GPV   A++L        +  G+ DSK ++ ++R  L   I  +A  
Sbjct: 26  IAGVDEVGRGCWFGPVFAGAVVLTEVAAVELLAEGLTDSKALTVRRRARLVPLIEDAATA 85

Query: 82  -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF-----A 135
            ++  AS + ID   I  AT  A+  A++ L       L+DG      LP + +      
Sbjct: 86  WALGQASAREIDALGIRSATELAMLRALQRLPTPLELVLVDG-----VLPLRLWMGPQRT 140

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           V++GDS   +IAAAS++AK  RD L++    ++  YG + HVGY TA H++ + + GP+ 
Sbjct: 141 VVRGDSKCAAIAAASVLAKQARDGLIKRLASRFYGYGLERHVGYGTAIHRRALLDLGPTE 200

Query: 196 IHRLTF 201
           +HR +F
Sbjct: 201 LHRRSF 206


>gi|124024062|ref|YP_001018369.1| ribonuclease HII [Prochlorococcus marinus str. MIT 9303]
 gi|189043640|sp|A2CC94|RNH2_PROM3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|123964348|gb|ABM79104.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9303]
          Length = 200

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 101/186 (54%), Gaps = 15/186 (8%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAI- 80
           +AG+DEVGRG   GPV   A++L        +  G+ DSK ++ ++R  L   I  +A  
Sbjct: 8   IAGVDEVGRGCWFGPVFAGAVVLTEVAAVELLAEGLTDSKALTVRRRARLVPLIEDAATA 67

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF-----A 135
            ++  AS + ID   I  AT  ++  A++ L       L+DG      LP + +      
Sbjct: 68  WALGQASAREIDALGIRSATELSMLRALQRLPTPLELVLVDG-----VLPLRLWMGPQRT 122

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           V++GDS   +IAAAS++AK  RD L++    ++  YG + HVGY TA H++ + + GP+ 
Sbjct: 123 VVRGDSKCAAIAAASVLAKQARDGLIKRLASRFYGYGLERHVGYGTAIHRRALLDLGPTA 182

Query: 196 IHRLTF 201
           +HR +F
Sbjct: 183 LHRRSF 188


>gi|313673941|ref|YP_004052052.1| ribonuclease h [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940697|gb|ADR19889.1| Ribonuclease H [Calditerrivibrio nitroreducens DSM 19672]
          Length = 178

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/174 (37%), Positives = 93/174 (53%), Gaps = 2/174 (1%)

Query: 29  IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSAS 87
           +DEVGRG  AGPVV  AI+L        I DSKK++  KR  L E I  + +   I    
Sbjct: 1   MDEVGRGCFAGPVVAVAILLKDGFYDKRIIDSKKLAENKRVVLAELIKENMLDCGIGVVC 60

Query: 88  HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147
              IDK NI +AT  A+  A+  ++V     +ID   +  +L     A IK +   + +A
Sbjct: 61  AGLIDKLNILRATKQAMQVAISRIRVGYDRVVIDAVKL-NNLNTPHEAHIKAEDKFMEVA 119

Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           AASI+AKV RD LM+  H  +P Y +  + GY T  H + I++ G + +HR TF
Sbjct: 120 AASIVAKVYRDNLMKDMHYLFPQYNWYKNKGYGTPDHIEAIRKFGITPLHRKTF 173


>gi|305432558|ref|ZP_07401719.1| ribonuclease HII [Campylobacter coli JV20]
 gi|304444269|gb|EFM36921.1| ribonuclease HII [Campylobacter coli JV20]
          Length = 202

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/178 (36%), Positives = 100/178 (56%), Gaps = 7/178 (3%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87
           GIDE GRGALAGP+++AA  L  +    G+ DSKK+S K+REELYE I  ++   I + S
Sbjct: 31  GIDEAGRGALAGPMMMAACKLHKD--LEGLCDSKKLSEKRREELYEIIIKNSNYLILAFS 88

Query: 88  HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV-IKGDSISLSI 146
            + ID+  +  A L      ++       + L DG +   +L        IK D+    +
Sbjct: 89  SEKIDEIGLS-ACLKMGLTLIKKHFKTENNFLYDGNT---NLGISGIKTQIKADANIKQV 144

Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +AASI+AKV++DR+M    K +P Y F+ +  Y T  H+++I + G   +HR +F+ L
Sbjct: 145 SAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKELIAKFGICKLHRKSFKLL 202


>gi|222823127|ref|YP_002574700.1| ribonuclease HII [Campylobacter lari RM2100]
 gi|222538348|gb|ACM63449.1| ribonuclease HII [Campylobacter lari RM2100]
          Length = 183

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/183 (38%), Positives = 98/183 (53%), Gaps = 16/183 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
             + G+DE GRGALAG + + A  L   NI  G+ DSKK+S KKREELYE+I S++   I
Sbjct: 1   MALVGVDEAGRGALAGDMHIGACKL-LKNID-GLADSKKLSAKKREELYEQILSNSNFLI 58

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPR-----SALIDGRSIPEDLPCQAFAVIK 138
            + S   ID   + +    A       L++I +       L DG      L  +   ++K
Sbjct: 59  LAFSPLQIDTLGLSQCLQLA-------LKIIKKHFSQDEILYDGNLNYGILDIKT--MVK 109

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
            D     ++AASI+AKV+RD+ MR   K Y +Y FD H GY T  H + IK  G S +HR
Sbjct: 110 ADMKVQEVSAASILAKVSRDQKMRYFSKIYSNYDFDKHKGYGTKAHIEKIKAFGYSPLHR 169

Query: 199 LTF 201
            +F
Sbjct: 170 KSF 172


>gi|227495319|ref|ZP_03925635.1| possible ribonuclease H [Actinomyces coleocanis DSM 15436]
 gi|226831189|gb|EEH63572.1| possible ribonuclease H [Actinomyces coleocanis DSM 15436]
          Length = 228

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 103/201 (51%), Gaps = 26/201 (12%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           V GIDEVGRGALAGPV V A +      P G+ DSK +S K+RE         A   +++
Sbjct: 28  VIGIDEVGRGALAGPVGVGACVAGLGEPPLGLTDSKALSLKQREHFVSLAQEWAYPWAVT 87

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR----SIPEDLPC------ 131
            AS++ +D+  I  A   A   A+EN++   V+    L+DG     + P+DL        
Sbjct: 88  YASNREVDELGIITALRLAGIRALENIKEAGVVADVVLLDGSHDWLTPPQDLFSFDTAPL 147

Query: 132 ----QAFAV------IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
               QA         +K D+    +AAAS++AKV RD+LM       P YG+  + GY +
Sbjct: 148 VERFQAVGAPPVVMKVKADASCSVVAAASVMAKVARDKLME--ELPDPGYGWAKNKGYGS 205

Query: 182 AKHQQVIKEKGPSCIHRLTFR 202
           A H++ I+  G S  HR +++
Sbjct: 206 AAHREAIRSLGVSQWHRTSWK 226


>gi|317182569|dbj|BAJ60353.1| ribonuclease HII [Helicobacter pylori F57]
          Length = 204

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/195 (34%), Positives = 95/195 (48%), Gaps = 25/195 (12%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS- 82
           GIDE GRG LAG + VA ++         +  G+ DSKK+S KKR  L +KI +   I  
Sbjct: 4   GIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEIKF 63

Query: 83  -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA------ 135
            +   S   ID   +      AI   +ENL   P +  IDG +        AF       
Sbjct: 64  WVVKKSANEIDNLGLGACLKLAIQEILENLSASPHAIKIDGNT--------AFGLNKRYS 115

Query: 136 ----VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +IKGD     IA AS++AK  +DR MR  H  + +YG+D + GY T +H + + + 
Sbjct: 116 NIETIIKGDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKL 175

Query: 192 GPSCIHRLTFRPLRN 206
           G +  HR +F  L+N
Sbjct: 176 GATPFHRHSF-TLKN 189


>gi|189911146|ref|YP_001962701.1| ribonuclease H [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167775822|gb|ABZ94123.1| Ribonuclease H [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
          Length = 246

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 98/207 (47%), Gaps = 37/207 (17%)

Query: 29  IDEVGRGALAGPVVVAAII--------LDPNNIPFGINDSKKISHKKREELYEKITS-SA 79
            DE GRG LAGPV V  +         +    I   + DSKKI   KR EL  +I   +A
Sbjct: 27  FDEAGRGTLAGPVSVGCVSFSSQTLEKIQSGTILKNLRDSKKIPEPKRFELRTEILQYAA 86

Query: 80  IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR--------SALIDGRSIPEDL-- 129
              +S  S ++ID+ NI++A    I  A   L V PR        + +  G    E L  
Sbjct: 87  YWHVSFVSAKFIDRFNINQAIFYGISRA---LPVNPRQVTGHLHKTGIPLGTQTKETLAP 143

Query: 130 --------------PCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174
                         P + +  I KGD +  SI+AASI+AK  RD  M     KYP YGF 
Sbjct: 144 FLFVDGNYKLKIHKPIEGYLSIPKGDDLVPSISAASILAKTYRDEYMEKMDAKYPGYGFA 203

Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            H GY T +H++ +++ G S IHRL+F
Sbjct: 204 KHKGYGTEEHREALRKLGISPIHRLSF 230


>gi|302542045|ref|ZP_07294387.1| ribonuclease HII [Streptomyces hygroscopicus ATCC 53653]
 gi|302459663|gb|EFL22756.1| ribonuclease HII [Streptomyces himastatinicus ATCC 53653]
          Length = 233

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/183 (37%), Positives = 103/183 (56%), Gaps = 1/183 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           V G+DEVGRGA AGPV V A +      P G+ DSK +S K+R EL  ++ S     ++ 
Sbjct: 23  VVGVDEVGRGAWAGPVTVCAAVTGLRRPPTGLTDSKLLSPKRRTELAHELESWVTAHALG 82

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            +S + ID   +  A   A   A+E L V P + ++DG+      P +   VIKGD   +
Sbjct: 83  HSSPEEIDDLGMTAALRLAATRALEGLPVRPDAVILDGKHDYLGAPWRVRTVIKGDQSCV 142

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           ++AAAS+IAKV RD LM      + D+ F  + GYP+  H+  ++++GP+  HRL++  L
Sbjct: 143 AVAAASVIAKVRRDALMAELGGAHADFRFGDNAGYPSPVHRAALRDQGPTPHHRLSWAYL 202

Query: 205 RNL 207
             L
Sbjct: 203 DGL 205


>gi|207092749|ref|ZP_03240536.1| ribonuclease HII [Helicobacter pylori HPKX_438_AG0C1]
          Length = 204

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 95/188 (50%), Gaps = 11/188 (5%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS- 82
           GIDE GRG LAG + VA +  D       +  G+ DSKK+S KKR  L +KI +   +  
Sbjct: 4   GIDEAGRGCLAGSLFVAGVACDEKTALEFLKMGLKDSKKLSQKKRFFLEDKIKTHGEVKF 63

Query: 83  -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138
            +   S + ID   +      AI   +EN   +     IDG +   + +  P     +IK
Sbjct: 64  FVVKKSAEAIDSLGLGACLRLAIEEILENGCSLANEIKIDGNTAFGLNKRYP-HIQTIIK 122

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD     IA AS++AK  +DR MR  H  + +YG+D + GY T +H + I + G +  HR
Sbjct: 123 GDETIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHR 182

Query: 199 LTFRPLRN 206
            +F  L+N
Sbjct: 183 HSF-TLKN 189


>gi|255321778|ref|ZP_05362933.1| ribonuclease HII [Campylobacter showae RM3277]
 gi|255301258|gb|EET80520.1| ribonuclease HII [Campylobacter showae RM3277]
          Length = 191

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 7/178 (3%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
            + GIDE GRGALAGP+ VAA +L   +I  G+NDSKK++ K+REEL ++I  ++   I+
Sbjct: 8   QICGIDEAGRGALAGPMAVAACVL-KRDIA-GLNDSKKLTEKRREELLKEIIKNSEFLIA 65

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S++ ID+  + +    A+   +          L DG +   +       ++  D    
Sbjct: 66  YFSNEQIDELGLSECLRRALR--LFKAHFTDCELLYDGNA---NYGTGIKTMVGADGKVA 120

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            ++AASI+AKV+RD LM+     +  YG+ +H GY T  H   I   G S + R +FR
Sbjct: 121 QVSAASILAKVSRDALMQAWDGVHSGYGYATHKGYGTKAHLDAIARLGDSPLQRRSFR 178


>gi|223038412|ref|ZP_03608706.1| ribonuclease HII [Campylobacter rectus RM3267]
 gi|222880269|gb|EEF15356.1| ribonuclease HII [Campylobacter rectus RM3267]
          Length = 189

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 98/185 (52%), Gaps = 7/185 (3%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77
           ++ K+   + GIDE GRGALAGP+ VAA +L    I  G NDSKK++ K+REEL+ +I  
Sbjct: 1   MKNKSNAQICGIDEAGRGALAGPLAVAACVL-KREIA-GPNDSKKLTAKRREELFGQIAG 58

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137
           ++   I+  S++ ID+  + +    A+     +        L DG +   +       ++
Sbjct: 59  NSEFLIAYFSNEQIDELGLSECLRRALRLFKSHFAGCE--PLYDGNA---NYGTGVKTMV 113

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
             D     ++AASI+AKV+RD LMR     +  YG+ +H GY T  H   I   G S + 
Sbjct: 114 GADGKVAQVSAASILAKVSRDVLMRAWDGVHGGYGYAAHKGYGTKAHLDAIARLGDSPLQ 173

Query: 198 RLTFR 202
           R +FR
Sbjct: 174 RRSFR 178


>gi|4514315|dbj|BAA75362.1| RNaseH [Bacillus halodurans]
          Length = 192

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/136 (41%), Positives = 83/136 (61%), Gaps = 10/136 (7%)

Query: 15  EAMVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKR 68
           E +  EK++W      VAG+DEVGRG LAGPVV AA+IL P ++   G+ DSKK++ + R
Sbjct: 60  EMLAYEKDLWAKGYEHVAGLDEVGRGPLAGPVVTAAVIL-PKDVQLPGLTDSKKLAKETR 118

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E  Y++I   A+  S++      ID+ NI++AT   +  A++ L V P + L+D  ++P 
Sbjct: 119 ESFYDRIKEVALAWSVAIVPVTVIDEVNIYQATKQGMMSAIDQLSVNPDALLLDAMNLPL 178

Query: 128 DLPCQAFAVIKGDSIS 143
            LP Q+   IKGD  S
Sbjct: 179 SLPQQSL--IKGDQKS 192


>gi|50955107|ref|YP_062395.1| ribonuclease HII [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951589|gb|AAT89290.1| ribonuclease HII [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 226

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/207 (37%), Positives = 104/207 (50%), Gaps = 12/207 (5%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKIS 64
           P  P    E  +  + +  +  +DEVGRGALAGPV V  +++D     IP G+ DSK +S
Sbjct: 3   PVTPSLRFEKALYRQGVTSIVAVDEVGRGALAGPVAVGMVVIDTAVKRIPLGLRDSKLLS 62

Query: 65  HKKREELYEKITSSAII-SISSASHQYIDKHNIHK--ATLDAIYHAVENLQVIP--RSAL 119
              RE L       ++  ++  AS   +D+H I +      A   AV   Q  P   SAL
Sbjct: 63  EPAREALEPACRRWSLFHAVGLASADEVDRHGIMRCLGLAGARAFAVLEEQGAPVHDSAL 122

Query: 120 I-DGR----SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174
           I DG     ++    P +    +K D    S+AAAS+IAKV RDRLM       P YG+ 
Sbjct: 123 ILDGNYDYLTLALTRPARVVTRVKADRDCASVAAASVIAKVHRDRLMIEHDADDPGYGWA 182

Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           S+ GY T  H   I E GPS IHRLT+
Sbjct: 183 SNKGYSTPGHFAAIAELGPSAIHRLTW 209


>gi|126697031|ref|YP_001091917.1| ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9301]
 gi|166226635|sp|A3PEZ1|RNH2_PROM0 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|126544074|gb|ABO18316.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9301]
          Length = 205

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 100/185 (54%), Gaps = 5/185 (2%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS-HKKREELYEKITSSAIIS 82
           GIDEVGRG++ GPV  A + L   N       G+ DSKK++  K++  L + +  S+   
Sbjct: 20  GIDEVGRGSIFGPVFSAVVELTEKNKFTLKKLGVTDSKKLTPKKRKLLLPKILLLSSDYG 79

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I  +S + IDK  I  AT  ++  A++ L+  P   L+DG  +          +  GDS 
Sbjct: 80  IGQSSAREIDKLGIRVATELSMIRALKKLKKKPSELLVDGPLLLRPWKGTQKNIESGDSK 139

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            +SIA+ASI+AKV+RD LM    +KY  Y    + GY T +H  +IK+ G + +HR +F 
Sbjct: 140 FISIASASIVAKVSRDNLMVRLERKYSGYLIFKNKGYGTREHLSLIKKNGITKLHRKSFL 199

Query: 203 PLRNL 207
              NL
Sbjct: 200 KKSNL 204


>gi|256832223|ref|YP_003160950.1| Ribonuclease H [Jonesia denitrificans DSM 20603]
 gi|256685754|gb|ACV08647.1| Ribonuclease H [Jonesia denitrificans DSM 20603]
          Length = 303

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 101/203 (49%), Gaps = 26/203 (12%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITSSAIIS- 82
           VAG+DEVGRGALAGPV V   ++DP     P G+ DSK++SH+ R  L   I   A+ S 
Sbjct: 87  VAGVDEVGRGALAGPVAVGVCVVDPTTQLPPVGLTDSKELSHEARALLVPMIQGWAVASA 146

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAV-ENLQVIP--RSALIDGRSIPEDLPCQAF----- 134
           +  A+ + ID+  I  A   A   A+ E +Q +    + L+DG       P Q       
Sbjct: 147 VGLATPEEIDECGIVGALRLAGQRALGEIMQRLGPVDTVLLDGSHNWLSEPVQDLFDAVT 206

Query: 135 ---------------AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
                            +K D    S+A ASI+AK  RD +MR     +P YG+ ++ GY
Sbjct: 207 SDQQTIDGYEEPRVVTRVKADLACASVAGASILAKEHRDAIMRELDHDFPHYGWVTNKGY 266

Query: 180 PTAKHQQVIKEKGPSCIHRLTFR 202
            ++ H   +  +GP+  HR+++R
Sbjct: 267 ASSGHTYALTTRGPTPHHRMSWR 289


>gi|57505767|ref|ZP_00371693.1| ribonuclease HII [Campylobacter upsaliensis RM3195]
 gi|57016040|gb|EAL52828.1| ribonuclease HII [Campylobacter upsaliensis RM3195]
          Length = 174

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 105/178 (58%), Gaps = 8/178 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           + GIDE GRGALAGP+ +AA  +L P N    + DSKK++ KKR++LY +I S++   I 
Sbjct: 2   LVGIDEAGRGALAGPLFIAACELLKPLN---ELKDSKKLNEKKRKKLYGEIISNSNYLIL 58

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           + S+  ID   + K     +   + +L    +  + DG +    L  +   +IK DS+  
Sbjct: 59  AFSNAQIDTLGLSKCLQKGL--EIIHLHFEKQRKIFDGNTNYGVLGIEN--LIKADSLIA 114

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            ++AASI+AKV+RD++M+    KYP YGF+ H  Y T  H++ I + G   +HRL+F+
Sbjct: 115 EVSAASILAKVSRDKVMQFLALKYPQYGFEIHKAYGTKAHRESIAKYGACKLHRLSFK 172


>gi|297156716|gb|ADI06428.1| ribonuclease HII [Streptomyces bingchenggensis BCW-1]
          Length = 243

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/183 (38%), Positives = 101/183 (55%), Gaps = 1/183 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84
           V GIDEVGRGA AGPV V A +      P G+ DSK +S KKR  L +++ T     ++ 
Sbjct: 33  VVGIDEVGRGAWAGPVTVCAAVTGLRRPPAGLTDSKLLSPKKRTALAQELETWVTSYALG 92

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID   +  A   A   A++ L V P + ++DG+      P +   VIKGD   +
Sbjct: 93  HASPEEIDALGMTAALRLAATRALDGLPVRPDAVILDGKHDYLGKPWKVRTVIKGDQSCV 152

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           ++AAAS+IAKV RD LM      + D+ F  + GYP+  H+  + E GP+  HRL++  L
Sbjct: 153 AVAAASVIAKVRRDTLMAELGAAHADFRFGDNAGYPSPAHRAALTELGPTPYHRLSWAYL 212

Query: 205 RNL 207
             L
Sbjct: 213 DGL 215


>gi|317488112|ref|ZP_07946688.1| ribonuclease HII [Eggerthella sp. 1_3_56FAA]
 gi|316912784|gb|EFV34317.1| ribonuclease HII [Eggerthella sp. 1_3_56FAA]
          Length = 262

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 99/184 (53%), Gaps = 14/184 (7%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           + G+DEVGRG LAGP+ V A++L       G+NDSK++    + E+ E+I         +
Sbjct: 75  IVGLDEVGRGPLAGPLAVGAVVLPAEPFIEGLNDSKQV----KPEVRERIAVQVKAVAVA 130

Query: 86  ASHQYIDKHNIHKATLDA--------IYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137
            + +Y++  +I    + A            +E   V P   L+DG   P  L  +   V+
Sbjct: 131 WTVEYVEASDIDACGMTASLALAFRRAIRRIEEAGVRPDVVLLDGN--PMRLDEREVNVV 188

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGD    SIAAASI+AKV RD LM    ++YP+YGFD+  GY +A H + IK  G + IH
Sbjct: 189 KGDGKCASIAAASIVAKVERDALMCRYAEEYPEYGFDACKGYASAAHIEAIKRYGLTPIH 248

Query: 198 RLTF 201
           R TF
Sbjct: 249 RATF 252


>gi|315604543|ref|ZP_07879606.1| ribonuclease HII [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313555|gb|EFU61609.1| ribonuclease HII [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 231

 Score = 95.1 bits (235), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/199 (41%), Positives = 107/199 (53%), Gaps = 24/199 (12%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREELYEKITSSAIIS- 82
           VAG+DEVGRGALAGPV V   ++  D   +P G+ DSK +S ++RE L E I S  + S 
Sbjct: 19  VAGMDEVGRGALAGPVAVGVALVGADAPAVPGGLTDSKALSPRRREALVEPIHSWVLASC 78

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQV---IPRSALIDGR----SIPEDL------ 129
           ++ AS   ID+  I  A   A   A+  +      P   L+DG     SIP+DL      
Sbjct: 79  VAYASAAEIDRWGIVCALRLAGRRALAGVVAKGHAPGGVLLDGSHDWLSIPDDLCAADGP 138

Query: 130 ---PCQAFAV---IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
               C A  V   +K D+    +AAAS++AKV RDRLMR A    P YG+ S+ GY +A 
Sbjct: 139 DYPDCGALPVHTQVKADASCAVVAAASVLAKVARDRLMREAED--PGYGWASNKGYGSAA 196

Query: 184 HQQVIKEKGPSCIHRLTFR 202
           H Q I   G S  HR T+R
Sbjct: 197 HAQAIARLGVSDFHRRTWR 215


>gi|139439754|ref|ZP_01773145.1| Hypothetical protein COLAER_02176 [Collinsella aerofaciens ATCC
           25986]
 gi|133774904|gb|EBA38724.1| Hypothetical protein COLAER_02176 [Collinsella aerofaciens ATCC
           25986]
          Length = 262

 Score = 95.1 bits (235), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 95/172 (55%), Gaps = 9/172 (5%)

Query: 34  RGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYID 92
           RG++AGP+ V A+ L      +GINDSKK++  +RE L  KI   A  I     + + ID
Sbjct: 85  RGSVAGPLTVCAVCLPMEPRVWGINDSKKLTPARRELLSVKIAEVATAIGFCHIAPKDID 144

Query: 93  KHNIHKATLDAIYHAVENLQVIPRSALIDGR---SIPEDLPCQAFAVIKGDSISLSIAAA 149
           +  + +A   A+  AV +  + P   L+DG    ++P +       V+KGD+    IAAA
Sbjct: 145 EMGMARAIRTAVAGAVADTGLEPDCVLMDGNPLGAVPNERD-----VVKGDAKIACIAAA 199

Query: 150 SIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SI+AKVTRD +M     +YP+Y      GY + +H + I++ G   +HR++F
Sbjct: 200 SIMAKVTRDEMMVEYDAEYPEYHLAESKGYASPEHIEAIRKHGLCPLHRVSF 251


>gi|119025252|ref|YP_909097.1| ribonuclease HII [Bifidobacterium adolescentis ATCC 15703]
 gi|118764836|dbj|BAF39015.1| ribonuclease [Bifidobacterium adolescentis ATCC 15703]
          Length = 264

 Score = 95.1 bits (235), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 113/229 (49%), Gaps = 37/229 (16%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--------DPNNIPFGINDSK 61
           P  ++E  +       + G DEVGRG+LAGPV+V A  +         P  +P G+ DSK
Sbjct: 33  PTLDMERAIAASGYDVIVGFDEVGRGSLAGPVMVGAAAIRTCDLSGPSPLAVPDGVADSK 92

Query: 62  KISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQV---IPRS 117
            ++  +RE ++E++ S  A  ++ SAS+  ID   I  A   A   A+   +    I  +
Sbjct: 93  MLTEHRREAIFEELKSWCASWAVGSASNTEIDDWGISYALGVAALRALSEAETRLGIDGN 152

Query: 118 ALIDGRSI--------PED---------------LPCQAFAVIKGDSISLSIAAASIIAK 154
            L+DGR +        P D               +P +    +KGD    ++A A++IAK
Sbjct: 153 GLLDGRPVKVGAILDGPNDYITKALNTFDAPDVPVPAEVSTKVKGDRYCATVATAAVIAK 212

Query: 155 VTRDRLM--RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           VTRDRLM    A  +Y  Y +  + GY +A H+  I E GPS +HRL++
Sbjct: 213 VTRDRLMVELGAQPQYEPYEWAHNKGYGSAAHRDAIAEFGPSDLHRLSW 261


>gi|57504609|ref|ZP_00370721.1| ribonuclease HII [Campylobacter coli RM2228]
 gi|57019504|gb|EAL56198.1| ribonuclease HII [Campylobacter coli RM2228]
          Length = 191

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/178 (36%), Positives = 99/178 (55%), Gaps = 7/178 (3%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87
           GIDE GRGALAGP+++AA  L  +    G+ DSKK+S K+REELYE I   +   I + S
Sbjct: 20  GIDEAGRGALAGPMMMAACKLHKD--LEGLCDSKKLSEKRREELYEIILLHSDYLILAFS 77

Query: 88  HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV-IKGDSISLSI 146
            + ID+  +  A L      ++       + L DG +   +L        IK D+    +
Sbjct: 78  SEKIDEIGLS-ACLKMGLTLIKKHFKTENNFLYDGNT---NLGISGIKTQIKADANIKQV 133

Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +AASI+AKV++DR+M    K +P Y F+ +  Y T  H+++I + G   +HR +F+ L
Sbjct: 134 SAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKELIAKFGICKLHRKSFKLL 191


>gi|78047020|ref|YP_363195.1| ribonuclease HII [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78035450|emb|CAJ23095.1| ribonuclease HII [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 129

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 63/99 (63%)

Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166
           AVE +  +   A IDG  +P+ LPC A A+I GD++  +I AASI+AKVTRDRLM   H 
Sbjct: 4   AVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALDRAIMAASIVAKVTRDRLMHELHT 63

Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           ++P+Y FD H GY T  H   ++  GP   HR +F P+R
Sbjct: 64  RHPEYRFDQHKGYSTPVHLAALQTHGPCPQHRRSFAPVR 102


>gi|294623977|ref|ZP_06702767.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292601724|gb|EFF45671.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 132

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 63/99 (63%)

Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166
           AVE +  +   A IDG  +P+ LPC A A+I GD++  +I AASI+AKVTRDRLM   H 
Sbjct: 4   AVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALDRAIMAASIVAKVTRDRLMHELHT 63

Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           ++P+Y FD H GY T  H   ++  GP   HR +F P+R
Sbjct: 64  RHPEYRFDQHKGYSTPVHLAALQTHGPCPQHRRSFAPVR 102


>gi|302537359|ref|ZP_07289701.1| ribonuclease HII [Streptomyces sp. C]
 gi|302446254|gb|EFL18070.1| ribonuclease HII [Streptomyces sp. C]
          Length = 236

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/188 (37%), Positives = 106/188 (56%), Gaps = 8/188 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRGA AGPV V A I      P G+ DSK ++ K+R+ L E +       ++ 
Sbjct: 23  IAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLLTPKRRDALLEVLEDWVTAHALG 82

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID+  +  A   A   A+E L + P + ++DG+      P +   VIKGD   +
Sbjct: 83  HASPEEIDELGMTAALRLAAVRALEALPMRPDAVILDGKHDYLGPPWRVRTVIKGDQSCI 142

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYP-----DYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           ++AAAS+IAKV RDR+M  A    P     D+ F ++ GYP+  H+  ++ +GP+  HRL
Sbjct: 143 AVAAASVIAKVRRDRMM--AGLGEPGDGVADFAFAANAGYPSPVHRAALEVRGPTAYHRL 200

Query: 200 TFRPLRNL 207
           ++  L  L
Sbjct: 201 SWSYLDAL 208


>gi|154486645|ref|ZP_02028052.1| hypothetical protein BIFADO_00464 [Bifidobacterium adolescentis
           L2-32]
 gi|154084508|gb|EDN83553.1| hypothetical protein BIFADO_00464 [Bifidobacterium adolescentis
           L2-32]
          Length = 238

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 114/230 (49%), Gaps = 39/230 (16%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--------DPNNIPFGINDSK 61
           P  ++E  +       + G DEVGRG+LAGPV+V A  +         P  +P G+ DSK
Sbjct: 7   PTLDMERAIAASGYDVIVGFDEVGRGSLAGPVMVGAAAIRTCDLAGSSPLQVPDGVADSK 66

Query: 62  KISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKA----TLDAIYHAVENLQVIPR 116
            ++  +RE ++E++ S  A  ++ SAS+  ID   I  A     L A+  A E L  I  
Sbjct: 67  MLTEHRREAIFEELKSWCASWAVGSASNTEIDDWGISYALGIAALRALGQAEEKLG-IDG 125

Query: 117 SALIDGRSI--------PED---------------LPCQAFAVIKGDSISLSIAAASIIA 153
             ++DG+ +        P D               +P +    +KGD    ++A A++IA
Sbjct: 126 DGMLDGKPVKVGAILDGPNDYITKALNTFDAPDVPVPAEVSTKVKGDRYCATVATAAVIA 185

Query: 154 KVTRDRLM--RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           KVTRDRLM    A  +Y  Y +  + GY +A H+  I E GPS +HRL++
Sbjct: 186 KVTRDRLMVELGAQPQYEPYEWAHNKGYGSAAHRDAIAEFGPSDLHRLSW 235


>gi|261337969|ref|ZP_05965853.1| ribonuclease HII [Bifidobacterium gallicum DSM 20093]
 gi|270277466|gb|EFA23320.1| ribonuclease HII [Bifidobacterium gallicum DSM 20093]
          Length = 243

 Score = 94.7 bits (234), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 119/236 (50%), Gaps = 43/236 (18%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII-----LDPNNIPFGINDSKKIS 64
           P  + E  + ++    + G DEVGRGALAGPV+V A       L   ++P  + DSK ++
Sbjct: 6   PTLDREQELADQGFDLIVGFDEVGRGALAGPVMVGAAAIWAADLPQLHVPDHVADSKMLT 65

Query: 65  HKKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ----------- 112
            ++RE +YE + + SA  ++  AS+Q ID   I  A   A   A+  L+           
Sbjct: 66  ERRREAIYEDLEAWSAAWAVGQASNQEIDDWGISHALGIAALRALAQLEHHLGIGIASNQ 125

Query: 113 -----------VIPR-SALIDG------RSIPE----DLPCQAFAV--IKGDSISLSIAA 148
                        PR  A++DG      +++      D+P  A  V  +KGD    ++A+
Sbjct: 126 TSISSEATTTLRTPRIGAILDGPHDYITKALGTFEAPDVPINAHVVTQVKGDQHCATVAS 185

Query: 149 ASIIAKVTRDRLM-RIAHK-KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           A++IAKVTRD LM  +A + +Y  YG+ S+ GY    H+Q I + G   +HRL+++
Sbjct: 186 AAVIAKVTRDHLMIELAERPEYAPYGWASNKGYGAKAHRQAIVDHGLCDLHRLSWK 241


>gi|1296968|emb|CAA65177.1| rnhB [Porphyromonas gingivalis]
          Length = 168

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 59/147 (40%), Positives = 81/147 (55%), Gaps = 1/147 (0%)

Query: 57  INDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP 115
           +NDSK++S K+R  L   I S  I   I   S Q ID+ NI +A+  A++ A+E L   P
Sbjct: 11  LNDSKQLSEKQRYTLRPVIESETIGWGIGIVSPQEIDEINILRASFLAMHRAIEQLPFRP 70

Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
              LIDG             ++ GD+   SIAAASI+AK  RD  M   +K +P YG++ 
Sbjct: 71  ERLLIDGNRFDPFEQIPHHCIVGGDARYRSIAAASILAKTYRDDSMLRLNKDFPMYGWER 130

Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           + GYP+  H+  I+  G S  HRLTFR
Sbjct: 131 NKGYPSPAHKSAIRRFGVSPHHRLTFR 157


>gi|217032077|ref|ZP_03437577.1| hypothetical protein HPB128_16g37 [Helicobacter pylori B128]
 gi|298735652|ref|YP_003728177.1| ribonuclease HII [Helicobacter pylori B8]
 gi|216946225|gb|EEC24833.1| hypothetical protein HPB128_16g37 [Helicobacter pylori B128]
 gi|298354841|emb|CBI65713.1| ribonuclease HII [Helicobacter pylori B8]
          Length = 204

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 65/190 (34%), Positives = 96/190 (50%), Gaps = 11/190 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81
           V GIDE GRG LAG + VA +  D       +  G+ DSKK+S KKR  L +KI +   +
Sbjct: 2   VLGIDEAGRGCLAGSLFVAGVACDEKTALEFLKMGLKDSKKLSPKKRFFLEDKIKTHGEV 61

Query: 82  S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136
              +   S   ID   +      +I   +EN   +     IDG +   + +  P     +
Sbjct: 62  GFFVVKKSANEIDSLGLGACLRLSIEEILENGCSLANEIKIDGNTAFGLNKRYP-HIQTI 120

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           IKGD     IA AS++AK ++DR MR  H  + +YG+D + GY T +H + I + G +  
Sbjct: 121 IKGDEKIAQIAMASVLAKASKDREMRQLHALFKEYGWDKNCGYGTKQHIEAIIKLGATPF 180

Query: 197 HRLTFRPLRN 206
           HR +F  L+N
Sbjct: 181 HRRSF-TLKN 189


>gi|145636492|ref|ZP_01792160.1| ribonuclease HII [Haemophilus influenzae PittHH]
 gi|145270317|gb|EDK10252.1| ribonuclease HII [Haemophilus influenzae PittHH]
          Length = 111

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 66/104 (63%)

Query: 103 AIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162
           A+  AV++L++ P   L+DG  IP+DL   A AV+KGDSI   I+AASI+AKV RD+ M 
Sbjct: 3   AMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKGDSIVAEISAASILAKVARDQEME 62

Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
              K+YP+Y F  H GYPT  H + + E G    HR +F P++ 
Sbjct: 63  ELDKQYPEYAFAKHKGYPTKLHLEKLAEFGTLPQHRRSFAPVKK 106


>gi|261840038|gb|ACX99803.1| ribonuclease HII [Helicobacter pylori 52]
          Length = 204

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 11/190 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG LAG + VA ++         +  G+ DSKK+S KKR  L +KI +   +
Sbjct: 2   ILGIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEV 61

Query: 82  S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136
              +   S   ID+  +      AI   +EN + +     IDG +   + +  P     +
Sbjct: 62  EFWVVKKSANEIDRLGLGACLKLAIQEILENNRSLANGIKIDGNTAFGLNKRYP-NIQTI 120

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           IKGD     IA AS++AK  +DR MR  H  + +YG+D + GY T +H + + + G +  
Sbjct: 121 IKGDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPF 180

Query: 197 HRLTFRPLRN 206
           HR +F  L+N
Sbjct: 181 HRHSF-TLKN 189


>gi|317011523|gb|ADU85270.1| ribonuclease HII [Helicobacter pylori SouthAfrica7]
          Length = 204

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 96/188 (51%), Gaps = 11/188 (5%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS- 82
           GIDE GRG LAG + VA ++ D       +  G+ DSKK+S KKR  L +KI S   +  
Sbjct: 4   GIDEAGRGCLAGSLFVAGVVCDEKTALEFLKMGLKDSKKLSPKKRFFLEDKIKSHDEVGF 63

Query: 83  -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138
            +   S + ID   +      AI   +EN + +     IDG +   + +  P     +IK
Sbjct: 64  FVVKKSAESIDSLGLGACLKLAIQEILENGRSLANEIKIDGNTAFGLDKRYP-HIQTIIK 122

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD     IA AS++AK  +DR M   H  + +YG+D + GY T +H + I + G +  HR
Sbjct: 123 GDETIAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHR 182

Query: 199 LTFRPLRN 206
            +F  L+N
Sbjct: 183 HSF-TLKN 189


>gi|78779978|ref|YP_398090.1| RNase HII [Prochlorococcus marinus str. MIT 9312]
 gi|97189158|sp|Q318P1|RNH2_PROM9 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|78713477|gb|ABB50654.1| RNase HII [Prochlorococcus marinus str. MIT 9312]
          Length = 205

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/179 (36%), Positives = 97/179 (54%), Gaps = 5/179 (2%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS-HKKREELYEKITSSAIIS 82
           GIDEVGRGA+ GPV  A ++L   N      FG+ DSKK++  K++  L + +  S+   
Sbjct: 20  GIDEVGRGAVFGPVFSAVVVLTEKNKFILKQFGVKDSKKLTPKKRKLLLPKILLLSSDYG 79

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I  +S + ID   I  AT  ++  A++ L+  P   ++DG  +          ++ GDS 
Sbjct: 80  IGQSSAREIDMLGIRVATELSMIRALKKLKEKPSEIIVDGPLLLRPWKGIQKNIVSGDSK 139

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             +IA+ASI+AKV RD LM    KKY  Y    + GY T +H   IK+ G + +HR +F
Sbjct: 140 ITAIASASIVAKVARDNLMERLEKKYSGYLIFKNKGYGTREHFSNIKKNGITNLHRKSF 198


>gi|208435220|ref|YP_002266886.1| ribonuclease HII [Helicobacter pylori G27]
 gi|238056779|sp|B5Z8X1|RNH2_HELPG RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|208433149|gb|ACI28020.1| ribonuclease HII [Helicobacter pylori G27]
          Length = 204

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 95/190 (50%), Gaps = 11/190 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG LAG + VA +  D       +  G+ DSKK+S KKR  L +KI +   +
Sbjct: 2   ILGIDEAGRGCLAGSLFVAGVACDDQTALEFLKMGLKDSKKLSPKKRFFLEDKIKTHGEV 61

Query: 82  S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136
              +   S   ID   +      A+   +EN   +     IDG +   + +  P     +
Sbjct: 62  GFFVVKKSANEIDSLGLGACLKLAVQEILENGCSLANEIKIDGNTAFGLNKRYP-NIQTI 120

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           IKGD     IA AS++AK  +DR MR  H  + +YG+D + GY T +H + I + G +  
Sbjct: 121 IKGDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAISKLGATPF 180

Query: 197 HRLTFRPLRN 206
           HR +F  L+N
Sbjct: 181 HRHSF-TLKN 189


>gi|56713262|gb|AAW23358.1| ribonuclease HIIA [Leishmania major]
          Length = 296

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 112/263 (42%), Gaps = 87/263 (33%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITS------ 77
           V G+DE GRG +AGPV VAA +   +  P  + + DSKK+    R E  E + +      
Sbjct: 18  VIGVDEAGRGCMAGPVGVAATLYRISATPVRYAVMDSKKMKESDRAETLEAMCAELSDAG 77

Query: 78  -----------------------------SAIISISSASHQYIDKHNIHKATLDAI---- 104
                                        +A++ +S      I++ NI  ATL+ +    
Sbjct: 78  VEGFVGTTVRDGACCLVRYQRRKPLQAVAAALVDVS-----VINERNILNATLEGMSAVC 132

Query: 105 ------YHAVENLQVI-PRSA--LIDGRSIP---------EDLPCQAF------------ 134
                 Y+AV  L  + P +   LIDG  +P         + +  QA             
Sbjct: 133 EAVVRSYNAVSGLGTLTPLTCAILIDGNRVPWTFLSGEERQRVCVQAVRKVEARKRIGVE 192

Query: 135 ----------AVIKGDSISLSIAAASIIAKVTRDRL-MRIAHKKYPDYGFDSHVGYPTAK 183
                      V+KGD+  LSIAAASI+AKV RD   + + H  +P YGFD H GY TA 
Sbjct: 193 YPALDGFSCTTVVKGDATLLSIAAASIVAKVARDAYAVSVMHPAFPQYGFDHHKGYCTAA 252

Query: 184 HQQVIKEKGPSCIHRLTFRPLRN 206
           H+  +   GPS  HRL + P++ 
Sbjct: 253 HKAELARWGPSRFHRLDYAPVKG 275


>gi|254527238|ref|ZP_05139290.1| ribonuclease HII [Prochlorococcus marinus str. MIT 9202]
 gi|221538662|gb|EEE41115.1| ribonuclease HII [Prochlorococcus marinus str. MIT 9202]
          Length = 205

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/186 (38%), Positives = 101/186 (54%), Gaps = 5/186 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-SAII 81
            GIDEVGRGA+ GPV  A ++L   N       G+ DSKK++ KKR+ L  KI   S+  
Sbjct: 19  VGIDEVGRGAIFGPVFSAVVVLTEKNKFLLKQLGVKDSKKLTPKKRKFLVPKILLLSSDY 78

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
            I  +S + ID   I  AT  ++  A++ L+  P   ++DG  +          ++ GDS
Sbjct: 79  GIGQSSVKEIDNLGIRVATELSMIRALKKLKEKPSELIVDGPLLLRPWSGTQKNIVSGDS 138

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             +SIA+ASIIAKV+RD LM    KKY  Y    + GY T +H  +IK  G + +HR +F
Sbjct: 139 KFISIASASIIAKVSRDNLMMKLEKKYSGYLIFKNKGYGTREHLSLIKRNGVTNLHRKSF 198

Query: 202 RPLRNL 207
               NL
Sbjct: 199 LKKLNL 204


>gi|182413915|ref|YP_001818981.1| ribonuclease H [Opitutus terrae PB90-1]
 gi|177841129|gb|ACB75381.1| Ribonuclease H [Opitutus terrae PB90-1]
          Length = 261

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 114/242 (47%), Gaps = 45/242 (18%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--------PFGI 57
           +P+R       + + + +  + G+DE GRGALAGPVV  A+++    +           +
Sbjct: 1   MPKRRQLRAFDLKQIEGLSGLIGVDEAGRGALAGPVVAGAVMVTKEFLEGRWAVTKAGRV 60

Query: 58  NDSKKISHKKREEL---YEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQ 112
           NDSK+++   REEL   +E++ +   I  +   A    +++ NI  AT  A+  A+E   
Sbjct: 61  NDSKQLTPAMREELWAEFEELVNQGQIHATFGVADVAEVEQLNILGATKLAMQRALEA-- 118

Query: 113 VIPRSA---------------------------LIDGRSIPEDLPCQAFAVIKGDSISLS 145
           + P SA                           L+DG ++    P    ++I GD+ SL 
Sbjct: 119 IYPPSAFQQKTEPDLFTSAEELAAYQPTVSCRILLDGLAM-RKFPYPHHSIISGDARSLC 177

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           IA ASI+AKV RDRLM     K+P YGF  H GY T +H + +   G    HR  F  LR
Sbjct: 178 IAMASIVAKVQRDRLMCELELKHPGYGFAQHKGYGTPEHCEALLRLGRCAQHRDLF--LR 235

Query: 206 NL 207
            L
Sbjct: 236 KL 237


>gi|297520198|ref|ZP_06938584.1| ribonuclease HII [Escherichia coli OP50]
          Length = 128

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 69/115 (60%), Gaps = 1/115 (0%)

Query: 91  IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAAS 150
           ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  + AV+KGDS    I+AAS
Sbjct: 8   IDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSRVPEISAAS 66

Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F P++
Sbjct: 67  ILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGPVK 121


>gi|29469217|gb|AAO65330.1| putative ribonuclease HII [Streptomyces murayamaensis]
          Length = 236

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/186 (38%), Positives = 103/186 (55%), Gaps = 4/186 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRGA AGPV V A I      P G+ DSK IS K+R EL  ++ S     ++ 
Sbjct: 23  IAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLISPKRRLELAGELESWVTAYALG 82

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            +S Q ID+  +  A   A   A++ L V P + ++DG+      P     VIKGD   +
Sbjct: 83  HSSPQEIDELGMTAALRLAAVRALDGLPVKPEAVILDGKHDYLGDPWWVRTVIKGDQSCV 142

Query: 145 SIAAASIIAKVTRDRLMR---IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           ++AAAS+IAKV RD +M     A  +   +GF  + GYP+  H+  + E GP+  HRL++
Sbjct: 143 AVAAASVIAKVRRDAMMAELGGAAGECAAFGFADNAGYPSPTHKTALVEWGPTPYHRLSW 202

Query: 202 RPLRNL 207
             L  L
Sbjct: 203 SYLDAL 208


>gi|317014714|gb|ADU82150.1| ribonuclease HII [Helicobacter pylori Gambia94/24]
          Length = 201

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 97/191 (50%), Gaps = 11/191 (5%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS- 82
           GIDE GRG LAG + VA ++ +       +  G+ DSKK+S KKR  L +KI +   +  
Sbjct: 4   GIDEAGRGCLAGSLFVAGVVCNEKTALEFLKMGLKDSKKLSPKKRFFLEDKIKTHDEVGF 63

Query: 83  -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138
            +   S   IDK  +      AI   VEN   +     IDG +   + +  P     +IK
Sbjct: 64  FVVKKSANEIDKLGLGACLKLAIQEIVENGCSLADEIKIDGNTAFGLNKRYP-HIQTIIK 122

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD     IA AS++AK  +DR M   H  + +YG+D + GY T +H + I + G +  HR
Sbjct: 123 GDEKVAQIAMASVLAKAAKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHR 182

Query: 199 LTFRPLRNLSV 209
            +F  L+N S+
Sbjct: 183 HSF-TLKNRSL 192


>gi|308183433|ref|YP_003927560.1| ribonuclease HII [Helicobacter pylori PeCan4]
 gi|308065618|gb|ADO07510.1| ribonuclease HII [Helicobacter pylori PeCan4]
          Length = 204

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 95/190 (50%), Gaps = 11/190 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81
           V GIDE GRG LAG + VA ++         +  G+ DSKK+S KKR  L  KI +   +
Sbjct: 2   VLGIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLENKIKTHGEV 61

Query: 82  S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136
              +   S + ID   +      AI   +EN + +     IDG +   + +  P     +
Sbjct: 62  GFFVVKKSAEAIDNLGLGACLKLAIQEILENNRSLANQIKIDGNTAFGLNKRYP-NIQTI 120

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           IKGD     IA AS++AK  +DR M   H  + +YG+D + GY T +H + I + G +  
Sbjct: 121 IKGDEKVAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPF 180

Query: 197 HRLTFRPLRN 206
           HR +F  L+N
Sbjct: 181 HRRSF-TLKN 189


>gi|145640735|ref|ZP_01796318.1| ribonuclease HII [Haemophilus influenzae R3021]
 gi|145274661|gb|EDK14524.1| ribonuclease HII [Haemophilus influenzae 22.4-21]
          Length = 111

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 65/104 (62%)

Query: 103 AIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162
           A+  AV++L++ P   L+DG  IP+DL     AV+KGDS+   I+AASI+AKV RD+ M 
Sbjct: 3   AMTRAVKSLKIQPHFVLVDGNKIPKDLAIPVQAVVKGDSLVAEISAASILAKVARDQEME 62

Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
              K+YP+Y F  H GYPT  H + + E G    HR +F P++ 
Sbjct: 63  ELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRRSFAPVKK 106


>gi|15612308|ref|NP_223961.1| ribonuclease HII [Helicobacter pylori J99]
 gi|7227933|sp|Q9ZJR1|RNH2_HELPJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|4155855|gb|AAD06828.1| RIBONUCLEASE HII [Helicobacter pylori J99]
          Length = 209

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 95/188 (50%), Gaps = 11/188 (5%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITSSAIIS- 82
           GIDE GRG LAG + VA ++ +       +  G+ DSKK+S KKR  L +KI +   +  
Sbjct: 9   GIDEAGRGCLAGSLFVAGVVCNEKIALEFLKMGLKDSKKLSPKKRFFLEDKIKTHGEVGF 68

Query: 83  -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138
            +   S   ID   +      AI   VEN   +     IDG +   + +  P     +IK
Sbjct: 69  FVVKKSANEIDHLGLGACLKLAIEEIVENGCSLANEIKIDGNTAFGLNKRYP-NIQTIIK 127

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD     IA AS++AK ++DR M   H  + +YG+D + GY T +H + I + G +  HR
Sbjct: 128 GDETIAQIAMASVLAKASKDREMLELHALFKEYGWDKNCGYGTKQHIEAINKLGATPFHR 187

Query: 199 LTFRPLRN 206
            +F  L+N
Sbjct: 188 HSF-TLKN 194


>gi|146303444|ref|YP_001190760.1| ribonuclease HII [Metallosphaera sedula DSM 5348]
 gi|145701694|gb|ABP94836.1| RNase HII [Metallosphaera sedula DSM 5348]
          Length = 208

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 104/191 (54%), Gaps = 24/191 (12%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-SAIIS 82
           GIDE GRG L GP+VV  + L+  +I      G+ DSKK++ KKREEL++ I S S  ++
Sbjct: 4   GIDEAGRGCLIGPMVVVGVALNERSIVALKQSGVKDSKKLTRKKREELFDLILSESEGVA 63

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVI-PRSALID--GRSIP-----EDLPCQAF 134
           ++ A  + ID +N++  T   +   ++ L  + P    +D  G+ I      EDL  +  
Sbjct: 64  VAKALPEEIDNNNLNSLTYTKVIEIIDALSWLNPEVVTVDKVGKEIEVIRAIEDLGFKPN 123

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH--QQVIK--- 189
            V K D + +  ++ASI+AKV RDRL+    K++ D+G     GYP+ +   Q V+    
Sbjct: 124 VVHKADELFVEASSASIVAKVIRDRLIESLKKEFGDFG----SGYPSDRKTVQWVLDLVS 179

Query: 190 --EKGPSCIHR 198
             E+ P+ I R
Sbjct: 180 RGEEPPNIIRR 190


>gi|310286901|ref|YP_003938159.1| Ribonuclease HII [Bifidobacterium bifidum S17]
 gi|311063802|ref|YP_003970527.1| ribonuclease HII RnhB [Bifidobacterium bifidum PRL2010]
 gi|309250837|gb|ADO52585.1| Ribonuclease HII [Bifidobacterium bifidum S17]
 gi|310866121|gb|ADP35490.1| RnhB Ribonuclease HII [Bifidobacterium bifidum PRL2010]
          Length = 233

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 111/229 (48%), Gaps = 38/229 (16%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII-----LDPNNIPFGINDSKK 62
           E P  ++E  +  +    V G DEVGRGALAGPV+V A       L    +P G+ DSK 
Sbjct: 5   EHPTLDMERQLAAQGCDVVIGCDEVGRGALAGPVMVGAAAMWSRDLAAAQVPAGVADSKL 64

Query: 63  ISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           ++  +RE + +++ S  A  ++  AS+  ID+  I  A   A   A+ +++   R   +D
Sbjct: 65  LTEHRREGIVDELRSWCAAYAVGQASNAEIDEWGISHALGIAALRALNDVE---RQLGMD 121

Query: 122 G-----RSI------PED---------------LPCQAFAVIKGDSISLSIAAASIIAKV 155
           G     R +      P D               +P Q    +KGD    +++ A++IAKV
Sbjct: 122 GPAGSGRRVDVILDGPNDYITKTMNTFDAPALPIPVQVSCKVKGDRHCATVSCAAVIAKV 181

Query: 156 TRDRLM---RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           TRD LM      + +Y  YG+  + GY +A H+  I   G + +HR+T+
Sbjct: 182 TRDHLMVDIAQGNPRYAPYGWAHNKGYGSAAHRDAIARLGVTPLHRVTW 230


>gi|261838642|gb|ACX98408.1| ribonuclease HII [Helicobacter pylori 51]
          Length = 204

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 95/195 (48%), Gaps = 25/195 (12%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS- 82
           GIDE GRG LAG + VA ++ +       +  G+ DSKK+S KKR  L +KI +   +  
Sbjct: 4   GIDEAGRGCLAGSLFVAGVVCNEKTALEFLSMGLKDSKKLSPKKRFFLEDKIKTHGEVKF 63

Query: 83  -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA------ 135
            +   S   ID   +      AI   +EN + +     IDG +        AF       
Sbjct: 64  WVVKKSANEIDSLGLGVCLKLAIQEILENGRSLANKIKIDGNT--------AFGLNKRYS 115

Query: 136 ----VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +IKGD     IA AS+IAK  +DR MR  H  + +YG+D + GY T +H + + + 
Sbjct: 116 NIETIIKGDEKIAQIAMASVIAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKL 175

Query: 192 GPSCIHRLTFRPLRN 206
           G +  HR +F  L+N
Sbjct: 176 GATPFHRHSF-TLKN 189


>gi|308185075|ref|YP_003929208.1| ribonuclease HII [Helicobacter pylori SJM180]
 gi|308060995|gb|ADO02891.1| ribonuclease HII [Helicobacter pylori SJM180]
          Length = 204

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 95/190 (50%), Gaps = 11/190 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG LAG + VA ++         +  G+ DSKK+S KKR  L +KI +   +
Sbjct: 2   ILGIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEV 61

Query: 82  S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136
              +   S + ID   +      AI   +EN   +     IDG +   + +  P     +
Sbjct: 62  GFFVVKKSAEAIDSLGLGACLKLAIQEILENGCSLANEIKIDGNTAFGLDKRYP-NIQTI 120

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           IKGD     IA AS++AK  +DR M   H  + +YG+D + GY T +H + I + G +  
Sbjct: 121 IKGDETIAQIAMASVLAKTAKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPF 180

Query: 197 HRLTFRPLRN 206
           HR +F  L+N
Sbjct: 181 HRHSF-TLKN 189


>gi|317181045|dbj|BAJ58831.1| ribonuclease HII [Helicobacter pylori F32]
          Length = 204

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 94/195 (48%), Gaps = 25/195 (12%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS- 82
           GIDE GRG LAG + VA ++         +  G+ DSKK+S KKR  L +KI +   I  
Sbjct: 4   GIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEIKF 63

Query: 83  -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA------ 135
            +   S   ID   +      AI   +EN + +     IDG +        AF       
Sbjct: 64  WVVKKSANEIDNLGLGACLKLAIQEILENDRSLANQIKIDGNT--------AFGLNKRYS 115

Query: 136 ----VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +IKGD     IA AS++AK  +DR MR  H  + +YG+D + GY T +H + + + 
Sbjct: 116 NIQTIIKGDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKL 175

Query: 192 GPSCIHRLTFRPLRN 206
           G +  HR +F  L+N
Sbjct: 176 GATPFHRHSF-TLKN 189


>gi|308064100|gb|ADO05987.1| ribonuclease HII [Helicobacter pylori Sat464]
          Length = 204

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 95/190 (50%), Gaps = 11/190 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG LAG + VA ++         +  G+ DSKK+S KKR  L +KI +   I
Sbjct: 2   ILGIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEI 61

Query: 82  S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136
              +   S   ID   +      A+   +EN   +     IDG +   + +  P     +
Sbjct: 62  KFWVVKKSANEIDNLGLGACLKLAVQEILENDHSLANQIKIDGNTAFGLNKRYP-NIQTI 120

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           IKGD     IA AS++AK  +DR MR  H  + +YG+D + GY T +H + + + G +  
Sbjct: 121 IKGDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPF 180

Query: 197 HRLTFRPLRN 206
           HR +F  L+N
Sbjct: 181 HRHSF-TLKN 189


>gi|308177303|ref|YP_003916709.1| ribonuclease HII [Arthrobacter arilaitensis Re117]
 gi|307744766|emb|CBT75738.1| ribonuclease HII [Arthrobacter arilaitensis Re117]
          Length = 241

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 97/197 (49%), Gaps = 21/197 (10%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREELYEKITSSAI-IS 82
           +A +DEVGRGALAGP+ V   ++D   +     + DSK +S   R  L + +   A+   
Sbjct: 26  IAAVDEVGRGALAGPITVGMTVIDIQQVTEFPALRDSKLLSPDTRMALVDPVRQWAVGYG 85

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR----SIPE----------- 127
           +  AS   ID+  +  A   A   A+    + P +AL+DG     + PE           
Sbjct: 86  VGHASATEIDELGVTGALRLAGSRAMVQCAIQPEAALLDGSYDWLTAPEPDLFDILADDR 145

Query: 128 ---DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
               L      ++KGD    +IA ASI+AKV RD +M     ++PD+G++ + GY TA H
Sbjct: 146 EPVGLRIPVATIVKGDMTCQAIAGASILAKVERDVIMVGLATEHPDFGWEINKGYATAAH 205

Query: 185 QQVIKEKGPSCIHRLTF 201
           +  I  +GP   HR ++
Sbjct: 206 RAAIVAQGPCDYHRKSW 222


>gi|224282458|ref|ZP_03645780.1| ribonuclease HII [Bifidobacterium bifidum NCIMB 41171]
 gi|313139607|ref|ZP_07801800.1| ribonuclease HII [Bifidobacterium bifidum NCIMB 41171]
 gi|313132117|gb|EFR49734.1| ribonuclease HII [Bifidobacterium bifidum NCIMB 41171]
          Length = 233

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 111/229 (48%), Gaps = 38/229 (16%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII-----LDPNNIPFGINDSKK 62
           E P  ++E  +  +    V G DEVGRGALAGPV+V A       L    +P G+ DSK 
Sbjct: 5   EHPTLDMERQLAAQGCDVVIGCDEVGRGALAGPVMVGAAAMWSRDLAAAQVPAGVADSKL 64

Query: 63  ISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           ++  +RE + +++ S  A  ++  AS+  ID+  I  A   A   A+ +++   R   +D
Sbjct: 65  LTEHRREGIVDELRSWCAAYAVGQASNAEIDEWGISHALGIAALRALNDVE---RQLGMD 121

Query: 122 G-----RSI------PED---------------LPCQAFAVIKGDSISLSIAAASIIAKV 155
           G     R +      P D               +P Q    +KGD    +++ A++IAKV
Sbjct: 122 GPAGSGRRVDVILDGPNDYITKTMNTFDAPALPIPVQVSCKVKGDRHCAAVSCAAVIAKV 181

Query: 156 TRDRLM---RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           TRD LM      + +Y  YG+  + GY +A H+  I   G + +HR+T+
Sbjct: 182 TRDHLMVDIAQGNPRYAPYGWAHNKGYGSAAHRDAIARLGVTPLHRVTW 230


>gi|317178062|dbj|BAJ55851.1| ribonuclease HII [Helicobacter pylori F16]
          Length = 204

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 95/197 (48%), Gaps = 25/197 (12%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG LAG + VA ++         +  G+ DSKK+S KKR  L +KI +   +
Sbjct: 2   ILGIDEAGRGCLAGSLFVAGVVCSEKTASEFLSMGLKDSKKLSPKKRFFLEDKIKTHGEV 61

Query: 82  S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA---- 135
              +   S   ID   +      AI   +EN + +     IDG +        AF     
Sbjct: 62  EFWVVKKSANEIDSLGLGACLKLAIQEILENGRSLANGIKIDGNT--------AFGLNKR 113

Query: 136 ------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                 +IKGD     IA AS++AK  +DR MR  H  + +YG+D + GY T +H + + 
Sbjct: 114 HSNIQTIIKGDEKIAQIAMASVLAKAFKDREMRQLHALFEEYGWDKNCGYGTKQHIEAMI 173

Query: 190 EKGPSCIHRLTFRPLRN 206
           + G +  HR +F  L+N
Sbjct: 174 KLGATPFHRHSF-TLKN 189


>gi|289524535|ref|ZP_06441389.1| ribonuclease HII [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502226|gb|EFD23390.1| ribonuclease HII [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 129

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 70/119 (58%)

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
            +A+  +ID+ NI +ATL A+  A  +L + P   ++DG     DL     A+ K D   
Sbjct: 2   QAANPWFIDRANILQATLWAMEKAASSLPLSPDIVIVDGNQKIPDLSFPQKALPKADKNV 61

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           L + AASI+AKV RDR+M    K YPDYGF  H GYPT +H++ +   G S IHR TF+
Sbjct: 62  LVVGAASIVAKVIRDRVMCAYDKLYPDYGFAVHKGYPTKEHRRALALMGASPIHRKTFK 120


>gi|266625575|ref|ZP_06118510.1| ribonuclease HII [Clostridium hathewayi DSM 13479]
 gi|288862520|gb|EFC94818.1| ribonuclease HII [Clostridium hathewayi DSM 13479]
          Length = 130

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/117 (47%), Positives = 71/117 (60%), Gaps = 3/117 (2%)

Query: 91  IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAAS 150
           ID+ NI +AT +A+  AV  L   P+  L D  +IP  L      +IKGD+ S+SIAA S
Sbjct: 15  IDEINILQATYEAMRLAVSQLTNPPQVLLNDAVTIP-GLDILQVPIIKGDAKSVSIAAGS 73

Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           I+AKVTRD +M    K +P+YGF  H GY TA H   +KE GP  IHR +F  +RN 
Sbjct: 74  IMAKVTRDHMMVEYDKLFPEYGFAKHKGYGTAAHIAALKEFGPCAIHRRSF--IRNF 128


>gi|188528111|ref|YP_001910798.1| ribonuclease HII [Helicobacter pylori Shi470]
 gi|238691950|sp|B2UV86|RNH2_HELPS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|188144351|gb|ACD48768.1| ribonuclease HII [Helicobacter pylori Shi470]
          Length = 204

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 95/190 (50%), Gaps = 11/190 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG LAG + VA ++         +  G+ DSKK+  KKR  L +KI +   I
Sbjct: 2   ILGIDEAGRGCLAGSLFVAGVVCGEKTALEFLEMGLKDSKKLGPKKRFFLEDKIKTHGEI 61

Query: 82  S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136
              +   S   ID   +      A+   +EN + +     IDG +   + +  P     +
Sbjct: 62  KFWVVKKSANEIDNLGLGACLKLAVQEILENGRSLANQIKIDGNTAFGLNKRYP-NIQTI 120

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           IKGD     IA AS++AK  +DR MR  H  + +YG+D + GY T +H + + + G +  
Sbjct: 121 IKGDERIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPF 180

Query: 197 HRLTFRPLRN 206
           HR +F  L+N
Sbjct: 181 HRHSF-TLKN 189


>gi|295396057|ref|ZP_06806241.1| ribonuclease HII [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971145|gb|EFG47036.1| ribonuclease HII [Brevibacterium mcbrellneri ATCC 49030]
          Length = 231

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/200 (34%), Positives = 102/200 (51%), Gaps = 28/200 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKKREELYEKITSS-- 78
           V G+DEVGRG +AGPV V A+  D         P G+ DSKK++ + R    E++ ++  
Sbjct: 34  VVGMDEVGRGCVAGPVGVGAVWCDLEALCAGGFPAGLRDSKKLTPRPRSLAAERVRATWE 93

Query: 79  -AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-------------- 123
            A+++   AS Q ID   I  A   A   A+  L       ++DG+              
Sbjct: 94  HAVVAY--ASPQEIDAMGISAALSLAGRRALAQLPAA-DLVMLDGKFNWLGTDPGLLGGD 150

Query: 124 -SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
            S  E  P + +  + GD   + IAAAS+IAKV RD +M    +++  YG+ S+VGYP+ 
Sbjct: 151 VSHVEVPPVRMY--VGGDDQRIPIAAASLIAKVDRDAVMSSLDREHHGYGWASNVGYPSP 208

Query: 183 KHQQVIKEKGPSCIHRLTFR 202
            H+Q I + G +  HR +FR
Sbjct: 209 AHKQAIADLGVTPWHRKSFR 228


>gi|108563693|ref|YP_628009.1| ribonuclease HII [Helicobacter pylori HPAG1]
 gi|123373683|sp|Q1CRT7|RNH2_HELPH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|107837466|gb|ABF85335.1| ribonuclease HII [Helicobacter pylori HPAG1]
          Length = 204

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 11/188 (5%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS- 82
           GIDE GRG LAG + VA +          +  G+ DSKK+S KKR  L +KI +   +  
Sbjct: 4   GIDEAGRGCLAGSLFVAGVACSEKTALEFLKMGLKDSKKLSQKKRFFLEDKIKTHGEVGF 63

Query: 83  -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138
            +   S + ID   +      AI   +EN   +     IDG +   + +  P     +IK
Sbjct: 64  FVVKKSAEAIDSLGLGACLKLAIEEILENGCSLANEIKIDGNTAFGLNKRYP-NIQTIIK 122

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD     IA AS++AK  +DR M   H  + +YG+D + GY T +H + I + G +  HR
Sbjct: 123 GDETIAQIAMASVLAKAAKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHR 182

Query: 199 LTFRPLRN 206
            +F  L+N
Sbjct: 183 HSF-TLKN 189


>gi|315587212|gb|ADU41593.1| ribonuclease H [Helicobacter pylori 35A]
          Length = 204

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 94/195 (48%), Gaps = 25/195 (12%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS- 82
           GIDE GRG LAG + VA ++         +  G+ DSKK+S KKR  L  KI +   +  
Sbjct: 4   GIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEGKIKTHGEVEF 63

Query: 83  -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA------ 135
            +   S   ID+  +      AI   +EN + +     IDG +        AF       
Sbjct: 64  WVVKKSANEIDRLGLGACLKLAIQEILENGRSLTNGIKIDGNT--------AFGLNKRYS 115

Query: 136 ----VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +IKGD     IA AS++AK  +DR MR  H  + +YG+D + GY T +H + + + 
Sbjct: 116 NIQTIIKGDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKL 175

Query: 192 GPSCIHRLTFRPLRN 206
           G +  HR +F  L+N
Sbjct: 176 GATPFHRHSF-TLKN 189


>gi|227875952|ref|ZP_03994075.1| possible ribonuclease H [Mobiluncus mulieris ATCC 35243]
 gi|227843484|gb|EEJ53670.1| possible ribonuclease H [Mobiluncus mulieris ATCC 35243]
          Length = 271

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 49/224 (21%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI- 80
           V G+DEVGRGALAGPV +   ++    +    P G+NDSK ++ ++RE L + I S    
Sbjct: 48  VGGMDEVGRGALAGPVCIGVTVVSATELAAGFPPGLNDSKALTARRREALVQPIQSWVKD 107

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQV---IPRSALIDGR-------------- 123
            +I  A++  ID+  I  A   A + A+  L     +P+  L+DG               
Sbjct: 108 FAIGEATNMEIDEMGIMAAMRLAGWRALNQLDARGHLPQKLLLDGNVDYLQAEHQANLFD 167

Query: 124 --------------------SIPEDLP-----CQAFAVIKGDSISLSIAAASIIAKVTRD 158
                               + P   P      +   ++K D  + ++A A+++AKV RD
Sbjct: 168 AQWHLMNPAQPAQPAQPAMGTTPAHNPPPAPLLKVQTLVKADQHAATVAGAAVLAKVYRD 227

Query: 159 RLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             M  +  + P YG+  +VGY T  H++ I   GPS  HR T++
Sbjct: 228 AFM--SRLEDPGYGWSHNVGYGTKAHREAISRLGPSRWHRHTWK 269


>gi|254779865|ref|YP_003057971.1| ribonuclease HII [Helicobacter pylori B38]
 gi|254001777|emb|CAX30008.1| Ribonuclease HII (RNase HII) [Helicobacter pylori B38]
          Length = 204

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 95/200 (47%), Gaps = 25/200 (12%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81
           V GIDE GRG LAG + VA ++         +  G+ DSKK+S KKR  L +KI +   +
Sbjct: 2   VLGIDEAGRGCLAGSLFVAGVVCSEKTALEFLKMGLKDSKKLSPKKRFFLEDKIKTHGEV 61

Query: 82  S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA---- 135
              +   S   ID   +      AI   +EN   +     IDG +        AF     
Sbjct: 62  GFFVVKKSANEIDSLGLGACLKLAIQEILENGCSLANEIKIDGNT--------AFGLNKR 113

Query: 136 ------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                 +IKGD     IA AS++AK  +DR M   H  + +YG+D + GY T +H + + 
Sbjct: 114 YSNIQTIIKGDETIAQIAMASVLAKAAKDREMLELHALFKEYGWDKNCGYGTKQHIEAMS 173

Query: 190 EKGPSCIHRLTFRPLRNLSV 209
           + G +  HR +F  L+N ++
Sbjct: 174 KLGATPFHRHSF-TLKNRTL 192


>gi|254445906|ref|ZP_05059382.1| ribonuclease HII [Verrucomicrobiae bacterium DG1235]
 gi|198260214|gb|EDY84522.1| ribonuclease HII [Verrucomicrobiae bacterium DG1235]
          Length = 250

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/226 (38%), Positives = 106/226 (46%), Gaps = 39/226 (17%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--------NIPFGINDSKKISHKKREE 70
           R KN   + GIDE GRGALAGPVV AA+                  INDSK +S  +REE
Sbjct: 13  RLKNRIGLIGIDEAGRGALAGPVVAAAVAAKEGFYDSEWCKRNASSINDSKLLSLAQREE 72

Query: 71  LYEKI-----TSSAIISISSASHQYIDKHNIHKATLDAIYHAVEN--------------- 110
           LY K+         +I +   S   I+  NI  AT  A+  AVE                
Sbjct: 73  LYAKLRWLEREGRILIGVGKGSISEIEDLNILGATQAAMKRAVEEILEQGDISPHDPDPL 132

Query: 111 ----LQVIPRSALIDGRSIPEDLPCQAF-----AVIKGDSISLSIAAASIIAKVTRDRLM 161
               L   PR  L   R + +  P +       AV+KGDS SL IA ASIIAKVTRDR+M
Sbjct: 133 FDAALGGEPRETLSQWRLLVDGKPMKHLGFKHEAVVKGDSKSLCIAMASIIAKVTRDRIM 192

Query: 162 RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
                +YP Y   S  GY T  H+  I + GP+ IHR  F  LR L
Sbjct: 193 MALDCEYPHYDLASSKGYATVLHRTAILDNGPTKIHRPLF--LRKL 236


>gi|283782847|ref|YP_003373601.1| ribonuclease HII [Gardnerella vaginalis 409-05]
 gi|298253324|ref|ZP_06977116.1| ribonuclease HII [Gardnerella vaginalis 5-1]
 gi|283442005|gb|ADB14471.1| ribonuclease HII [Gardnerella vaginalis 409-05]
 gi|297532719|gb|EFH71605.1| ribonuclease HII [Gardnerella vaginalis 5-1]
          Length = 247

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/243 (34%), Positives = 124/243 (51%), Gaps = 48/243 (19%)

Query: 4   NSIPERPHFELEA-MVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-----DPNNIPFGI 57
           ++IP  P F+ E  ++ E   W V G+DEVGRG+LAGPV+V A ++       N +P G+
Sbjct: 6   SNIPLVPSFKYEQDLLCEGYDW-VIGLDEVGRGSLAGPVMVGAAVIGIKQVKENYMPEGL 64

Query: 58  NDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNIHK----ATLDAIYHAVENLQ 112
            DSK +S K+REELYE +       ++ S ++  ID+  I      A L AI    E+++
Sbjct: 65  ADSKLLSEKRREELYEPLQKWCTTWAVGSCTNTEIDEWGISYALGVAALKAISKVEEDIK 124

Query: 113 VIPRS------------------ALIDGRS--------------IPEDLPCQAFAVIKGD 140
            +  S                  A++DG                IPE  P +   ++K D
Sbjct: 125 KLSFSVNANTRENTRENSNFRIAAILDGPCDYIDKVANTFDAPYIPE--PVKVHTLVKAD 182

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHK--KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
               S+AAA+++AKVTRD LM    K  KY  Y + S+ GY +  H+  IK+ GPS +HR
Sbjct: 183 RQCASVAAAAVLAKVTRDNLMVSLAKNPKYAAYDWASNKGYGSLAHRNAIKKVGPSDLHR 242

Query: 199 LTF 201
           L++
Sbjct: 243 LSW 245


>gi|257063750|ref|YP_003143422.1| ribonuclease HII [Slackia heliotrinireducens DSM 20476]
 gi|256791403|gb|ACV22073.1| ribonuclease HII [Slackia heliotrinireducens DSM 20476]
          Length = 258

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/183 (37%), Positives = 101/183 (55%), Gaps = 16/183 (8%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87
           G+DEVGRG +AGP+ VAA++L       G+NDSK+++   R  + E I + A+    +  
Sbjct: 73  GLDEVGRGPVAGPLTVAAVVLPDAPRIEGLNDSKQVAPAARTRMAESIKACAL----AWD 128

Query: 88  HQYIDKHNIHKATLDAIYHAV---------ENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
            ++I+ H+I    + A              E L  +  + L+DG   P  +  +   +IK
Sbjct: 129 IEFIEPHDIDAYGMSACLRTAFGQAIAAIDEQLSGVA-AVLLDGN--PLHIDPRERNIIK 185

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD+    IAAASIIAKV RD LM    K+YP YGFDS+ GY +A H + I+  G + +HR
Sbjct: 186 GDAKCAPIAAASIIAKVERDALMCEYAKEYPQYGFDSNKGYGSADHIEAIRTYGLTPVHR 245

Query: 199 LTF 201
            +F
Sbjct: 246 ASF 248


>gi|170781194|ref|YP_001709526.1| ribonuclease HII [Clavibacter michiganensis subsp. sepedonicus]
 gi|169155762|emb|CAQ00883.1| ribonuclease HII [Clavibacter michiganensis subsp. sepedonicus]
          Length = 219

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/204 (37%), Positives = 107/204 (52%), Gaps = 12/204 (5%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAIILDPNNIPFGINDSKKISHKK 67
           P FE+E  +       V G DEVGRGALAGPV V  AA+  D +  P G+ DSK +S K+
Sbjct: 6   PTFEIEHELLGAGAALVIGCDEVGRGALAGPVAVGMAAVGPDADAFPVGLRDSKMLSEKR 65

Query: 68  REELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQ-----VIPRSALID 121
           RE L+  +++ A  S +  AS + +D   I      A   A+  L      ++    L+D
Sbjct: 66  REALHPLVSAWAGHSAVGMASAEEVDALGITACLGLAGRRALVELHHLGVPLLDSVVLLD 125

Query: 122 GRS---IPEDL-PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
           G      P  + P      +K D    S+AAAS++AKV RDRLM   H++ P+YG+  + 
Sbjct: 126 GSHDWLTPALVHPVPVRLRVKADRDCASVAAASVLAKVHRDRLMAAWHEESPEYGWAGNK 185

Query: 178 GYPTAKHQQVIKEKGPSCIHRLTF 201
           GY +  H  VI+  G S IHR T+
Sbjct: 186 GYGSPAHLDVIRANGASRIHRRTW 209


>gi|306823660|ref|ZP_07457035.1| ribonuclease HII [Bifidobacterium dentium ATCC 27679]
 gi|309802965|ref|ZP_07697066.1| ribonuclease HII [Bifidobacterium dentium JCVIHMP022]
 gi|304553367|gb|EFM41279.1| ribonuclease HII [Bifidobacterium dentium ATCC 27679]
 gi|308220432|gb|EFO76743.1| ribonuclease HII [Bifidobacterium dentium JCVIHMP022]
          Length = 234

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 117/228 (51%), Gaps = 39/228 (17%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--------DPNNIPFGINDSK 61
           P  +LE  +  +    + G DEVGRG+LAGPV+V A  +        D  ++P G+ DSK
Sbjct: 7   PTLQLEREIAARGYDVIVGFDEVGRGSLAGPVMVGAAAIRTADLDGPDALDVPEGVADSK 66

Query: 62  KISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
            ++  +RE ++E + S SA  ++ ++S+  ID+  I  A   A   A++ ++   R   I
Sbjct: 67  MLTEHRRETIFESLKSWSASWAVGASSNAEIDEWGISYALGVAALRALDEVE---RELGI 123

Query: 121 --DGRSI--------PED---------------LPCQAFAVIKGDSISLSIAAASIIAKV 155
             DGRSI        P D               +P      +KGD    ++A A++IAKV
Sbjct: 124 ADDGRSIRVGAILDGPNDYITKALGTFDAPDVPVPATVTTKVKGDRYCATVATAAVIAKV 183

Query: 156 TRDRLM-RIAHK-KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           TRDRLM  +  + +Y  Y +  + GY +A H++ I   GPS +HR+++
Sbjct: 184 TRDRLMIELGERPEYAIYEWQRNKGYGSAAHREAIAAHGPSDLHRISW 231


>gi|217033640|ref|ZP_03439068.1| hypothetical protein HP9810_899g76 [Helicobacter pylori 98-10]
 gi|216943986|gb|EEC23420.1| hypothetical protein HP9810_899g76 [Helicobacter pylori 98-10]
          Length = 204

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 95/188 (50%), Gaps = 11/188 (5%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS- 82
           GIDE GRG LAG + VA ++         +  G+ DSKK+S KKR  L ++I S   +  
Sbjct: 4   GIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEKEIRSHDEVKF 63

Query: 83  -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138
            +   S   ID   +      AI   +EN + +     IDG +   + +  P     +IK
Sbjct: 64  WVVKKSANEIDNLGLGACLKLAIQEILENGRSLANGIKIDGNTAFGLNKRYP-NIQTIIK 122

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD     IA AS++AK  +DR MR  H  + +YG+D + GY T +H + + + G +  HR
Sbjct: 123 GDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPFHR 182

Query: 199 LTFRPLRN 206
            +F  L+N
Sbjct: 183 HSF-TLKN 189


>gi|315657113|ref|ZP_07909997.1| ribonuclease HII [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315492216|gb|EFU81823.1| ribonuclease HII [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 235

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 103/210 (49%), Gaps = 38/210 (18%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD---------PNNIPFGINDSKKISHKKREELYEKIT 76
           + G+DEVGRGALAGPV V   +LD         P   P G+NDSK+++ ++R  L + I 
Sbjct: 29  IGGMDEVGRGALAGPVCVGVAVLDQRSLENPDFPQGFPVGLNDSKQLTARRRVALQDPIQ 88

Query: 77  SSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQV---IPRSALIDGR--------- 123
           +     +I  AS+  ID+  I  A   A + A+  L     +P+  L+DG          
Sbjct: 89  AWVRDFAIGQASNTEIDELGIMSALRLAGWRALNELDARGHLPQRLLLDGNFDYLASPRQ 148

Query: 124 -----------SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172
                      S PE        ++KGD  +  IAAA+++AKV RD  MR  H   P YG
Sbjct: 149 PDLFAGAGNLVSSPE---VSVETLVKGDGKAAVIAAAAVLAKVYRDAFMRSLHD--PGYG 203

Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           +  +VGY T  H+  + E G S  HR T++
Sbjct: 204 WARNVGYGTPAHKAGLAELGASVWHRKTWK 233


>gi|304389808|ref|ZP_07371767.1| ribonuclease HII [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304326984|gb|EFL94223.1| ribonuclease HII [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 235

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 106/207 (51%), Gaps = 32/207 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD---------PNNIPFGINDSKKISHKKREELYEKIT 76
           + G+DEVGRGALAGPV V   +LD         P   P G+NDSK+++ ++R  L + I 
Sbjct: 29  IGGMDEVGRGALAGPVCVGVAVLDQRSLDNPDFPQGFPVGLNDSKQLTARRRVALQDPIQ 88

Query: 77  SSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQV---IPRSALIDGR----SIPE- 127
           +     +I  AS+  ID+  I  A   A + A+  L     +P+  L+DG     + P  
Sbjct: 89  AWVRDFAIGQASNTEIDELGIMPALRLAGWRALNELDARGHLPQRLLLDGNFDYLASPRQ 148

Query: 128 -DLPCQAF-----------AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
            DL  +A             ++KGD  +  IAAA+++AKV RD  MR  H   P YG+  
Sbjct: 149 PDLFAEAGNLVSSPEVSVETLVKGDGKAAVIAAAAVLAKVYRDAFMRSLHD--PGYGWAR 206

Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           +VGY T  H+  + E G S  HR T++
Sbjct: 207 NVGYGTPAHKAGLAELGASVWHRKTWK 233


>gi|257068188|ref|YP_003154443.1| ribonuclease HII [Brachybacterium faecium DSM 4810]
 gi|256559006|gb|ACU84853.1| ribonuclease HII [Brachybacterium faecium DSM 4810]
          Length = 272

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 97/194 (50%), Gaps = 20/194 (10%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKKREELYEKITSSAI 80
           + G+DEVGRGALAGPV V A  ++        +P G+ DSKK++ ++RE L E I  S +
Sbjct: 25  IVGVDEVGRGALAGPVAVGACAVEVVGGLAAPLPEGVRDSKKLTARRREALVEPILGSVL 84

Query: 81  I-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV--- 136
             ++  AS   ID+  I  A   A   A++ L V   + ++DG     D+   A      
Sbjct: 85  AGAVGWASPAEIDEIGIMPALTTAALRALDLLGVAADAIVLDGDV---DVLTPALTAPGR 141

Query: 137 --------IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
                   +  D    S+AAASI+AKV RD  M     + P+Y + S+ GY +  H++ I
Sbjct: 142 PTPLVHLQVSADRDCASVAAASILAKVARDARMVELDAEAPEYCWASNKGYGSKPHREAI 201

Query: 189 KEKGPSCIHRLTFR 202
              G    HR ++R
Sbjct: 202 DRFGVHAHHRRSWR 215


>gi|298346453|ref|YP_003719140.1| putative ribonuclease H [Mobiluncus curtisii ATCC 43063]
 gi|298236514|gb|ADI67646.1| possible ribonuclease H [Mobiluncus curtisii ATCC 43063]
          Length = 235

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 106/207 (51%), Gaps = 32/207 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD---------PNNIPFGINDSKKISHKKREELYEKIT 76
           + G+DEVGRGALAGPV V   +LD         P   P G+NDSK+++ ++R  L + I 
Sbjct: 29  IGGMDEVGRGALAGPVCVGVAVLDQRSLDNPDFPQGFPVGLNDSKQLTARRRVALQDPIQ 88

Query: 77  SSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQV---IPRSALIDGR----SIPE- 127
           +     +I  AS+  ID+  I  A   A + A+  L     +P+  L+DG     + P  
Sbjct: 89  AWVRDFAIGQASNTEIDELGIMPALRLAGWRALNELDARGHLPQRLLLDGNFDYLASPRQ 148

Query: 128 -DLPCQAF-----------AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
            DL  +A             ++KGD  +  IAAA+++AKV RD  MR  H   P YG+  
Sbjct: 149 PDLFAEAGNLVSSPEVSVETLVKGDGKAAVIAAAAVLAKVYRDAFMRSLHD--PGYGWAR 206

Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           +VGY T  H+  + E G S  HR T++
Sbjct: 207 NVGYGTPAHKAGLAELGASVWHRKTWK 233


>gi|308062608|gb|ADO04496.1| ribonuclease HII [Helicobacter pylori Cuz20]
          Length = 204

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 94/190 (49%), Gaps = 11/190 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG LAG + VA ++         +  G+ DSKK+  KKR  L +KI +   I
Sbjct: 2   ILGIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLGPKKRFFLEDKIKTHGEI 61

Query: 82  S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136
              +   S   ID   +      A+   +EN   +     IDG +   + +  P     +
Sbjct: 62  KFWVVKKSANEIDNLGLGVCLKLAVQEILENDHSLANQIKIDGNTAFGLNKRYP-NIQTI 120

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           IKGD     IA AS++AK  +DR MR  H  + +YG+D + GY T +H + + + G +  
Sbjct: 121 IKGDERIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPF 180

Query: 197 HRLTFRPLRN 206
           HR +F  L+N
Sbjct: 181 HRHSF-TLKN 189


>gi|306819232|ref|ZP_07452943.1| ribonuclease HII [Mobiluncus mulieris ATCC 35239]
 gi|304648014|gb|EFM45328.1| ribonuclease HII [Mobiluncus mulieris ATCC 35239]
          Length = 274

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 52/227 (22%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI- 80
           V G+DEVGRGALAGPV +   ++    +    P G+NDSK ++ ++RE L + I S    
Sbjct: 48  VGGMDEVGRGALAGPVCIGVTVVSATELAAGFPPGLNDSKALTARRREALVQPIQSWVKD 107

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQV---IPRSALIDGR-------------- 123
            +I  A++  ID+  I  A   A + A+  L     +P+  L+DG               
Sbjct: 108 FAIGEATNMEIDEMGIMAAMRLAGWRALNQLDARGHLPQKLLLDGNVDYLQAEHQANLFD 167

Query: 124 -----------------------SIPEDLP-----CQAFAVIKGDSISLSIAAASIIAKV 155
                                  + P   P      +   ++K D  + ++A A+++AKV
Sbjct: 168 AQWHLMNPAQPAQPAQPAQPAMGTTPAHNPPPAPLLKVQTLVKADQHAATVAGAAVLAKV 227

Query: 156 TRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            RD  M  +  + P YG+  +VGY T  H++ I   GPS  HR T++
Sbjct: 228 YRDAFM--SRLEDPGYGWSHNVGYGTKAHREAISRLGPSRWHRHTWK 272


>gi|163839835|ref|YP_001624240.1| ribonuclease HII [Renibacterium salmoninarum ATCC 33209]
 gi|162953311|gb|ABY22826.1| ribonuclease HII [Renibacterium salmoninarum ATCC 33209]
          Length = 217

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/202 (34%), Positives = 98/202 (48%), Gaps = 27/202 (13%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN-NIPF-GINDSKKISHKKREELYEKITSSAII-S 82
           VAG DEVGRGALAGPV V  +++D +   P  G+ DSK +S ++RE L   I   A+  +
Sbjct: 8   VAGADEVGRGALAGPVSVGMVVVDASAQKPLAGVKDSKLLSAQERESLVPLIKHWAVGHA 67

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDG----------------- 122
           +  AS   ID   +  A   A   A   L    V   + ++DG                 
Sbjct: 68  VGHASAAEIDAGGLTSALRLAGTRAWNQLLAAGVRAETVILDGNHNWLASAQLSIFDTPT 127

Query: 123 --RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
               +  D+P Q    IK D   LS+AAAS++AKV RD ++       P +G+  + GY 
Sbjct: 128 ADEELGVDVPVQTK--IKADLSCLSVAAASVLAKVERDAILIELDAANPQFGWKINKGYA 185

Query: 181 TAKHQQVIKEKGPSCIHRLTFR 202
           TA H+  I   G S  HR+++R
Sbjct: 186 TASHRNAIDLHGASQWHRMSWR 207


>gi|307700238|ref|ZP_07637279.1| ribonuclease HII [Mobiluncus mulieris FB024-16]
 gi|307614620|gb|EFN93848.1| ribonuclease HII [Mobiluncus mulieris FB024-16]
          Length = 257

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 102/221 (46%), Gaps = 46/221 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI- 80
           V G+DEVGRGALAGPV +   ++    +    P G+NDSK ++ ++RE L + I S    
Sbjct: 37  VGGMDEVGRGALAGPVCIGVTVVSATELAAGFPPGLNDSKALTARRREALVQPIQSWVKD 96

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQV---IPRSALIDGR-------------- 123
            +I  A++  ID+  I  A   A + A+  L     +P+  L+DG               
Sbjct: 97  FAIGEATNMEIDEMGIMAAMRLAGWRALNQLDARGHLPQKLLLDGNVDYLQAEHQANLFD 156

Query: 124 -----------------SIPEDLP-----CQAFAVIKGDSISLSIAAASIIAKVTRDRLM 161
                            + P   P      +   ++K D  + ++A A+++AKV RD  M
Sbjct: 157 AQWHLMNPAQPAQPAMGTTPAHNPPPAPLLKVQTLVKADQHAATVAGAAVLAKVYRDAFM 216

Query: 162 RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +  + P YG+  +VGY T  H++ I   G S  HR T++
Sbjct: 217 --SRLEDPGYGWSHNVGYGTKAHREAISRLGSSRWHRHTWK 255


>gi|171741370|ref|ZP_02917177.1| hypothetical protein BIFDEN_00451 [Bifidobacterium dentium ATCC
           27678]
 gi|283455277|ref|YP_003359841.1| ribonuclease [Bifidobacterium dentium Bd1]
 gi|171276984|gb|EDT44645.1| hypothetical protein BIFDEN_00451 [Bifidobacterium dentium ATCC
           27678]
 gi|283101911|gb|ADB09017.1| Putative ribonuclease [Bifidobacterium dentium Bd1]
          Length = 234

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 116/228 (50%), Gaps = 39/228 (17%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--------DPNNIPFGINDSK 61
           P  +LE  +  +    + G DEVGRG+LAGPV+V A  +        D  ++P G+ DSK
Sbjct: 7   PTLQLEREIAARGYDVIVGFDEVGRGSLAGPVMVGAAAIRTADLDGPDALDVPEGVADSK 66

Query: 62  KISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQV------- 113
            ++  +RE ++E + S SA  ++ ++S+  ID+  I  A   A   A++ ++        
Sbjct: 67  MLTEHRRETIFESLKSWSASWAVGASSNAEIDEWGISYALGVAALRALDEVERELGIADD 126

Query: 114 ---IPRSALIDGRSIPED---------------LPCQAFAVIKGDSISLSIAAASIIAKV 155
              I   A++DG   P D               +P      +KGD    ++A A++IAKV
Sbjct: 127 GRPIRVGAILDG---PNDYITKALGTFDAPDVPVPATVTTKVKGDRYCATVATAAVIAKV 183

Query: 156 TRDRLM-RIAHK-KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           TRDRLM  +  + +Y  Y +  + GY +A H++ I   GPS +HR+++
Sbjct: 184 TRDRLMIELGERPEYAIYEWQRNKGYGSAAHREAIAAHGPSDLHRISW 231


>gi|109946755|ref|YP_663983.1| ribonuclease HII [Helicobacter acinonychis str. Sheeba]
 gi|123173609|sp|Q17ZE2|RNH2_HELAH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|109713976|emb|CAJ98984.1| rnhB [Helicobacter acinonychis str. Sheeba]
          Length = 193

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 94/195 (48%), Gaps = 25/195 (12%)

Query: 28  GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITS--SAII 81
           GIDE GRG L G + VA ++       + +  G+ DSKK+S  KR  L +KI S      
Sbjct: 4   GIDEAGRGCLVGSLFVAGVVCGEKIALDFLKMGLKDSKKLSQNKRFFLEDKIKSHDEVKF 63

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA------ 135
            +   S   ID  ++      A+   +E L  + ++  IDG +        AF       
Sbjct: 64  CVIKKSAGEIDSLSLGVCLKLAVQEILEKLSPLAQTINIDGNT--------AFGLNKRYS 115

Query: 136 ----VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +IKGD     IA AS++AK ++DR M   H  + +YG+D + GY T KH + I + 
Sbjct: 116 NLKTIIKGDEKIAQIAMASVLAKTSKDREMLELHALFKEYGWDKNCGYGTKKHIEAIAKL 175

Query: 192 GPSCIHRLTFRPLRN 206
           G +  HR +F  L+N
Sbjct: 176 GATPFHRHSF-ALKN 189


>gi|315655024|ref|ZP_07907928.1| ribonuclease HII [Mobiluncus curtisii ATCC 51333]
 gi|315490680|gb|EFU80301.1| ribonuclease HII [Mobiluncus curtisii ATCC 51333]
          Length = 236

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 103/210 (49%), Gaps = 38/210 (18%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD---------PNNIPFGINDSKKISHKKREELYEKIT 76
           + G+DEVGRGALAGPV V   ++D         P   P G+NDSK+++ ++R  L + I 
Sbjct: 30  IGGMDEVGRGALAGPVCVGVAVVDQRSLENPDFPQGFPVGLNDSKQLTARRRVALQDPIQ 89

Query: 77  SSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQV---IPRSALIDGR--------- 123
           +     +I  AS+  ID+  I  A   A + A+  L     +P+  L+DG          
Sbjct: 90  AWVRDFAIGQASNTEIDELGIMPALRLAGWRALNELDARGHLPQRLLLDGNFDYLASPRQ 149

Query: 124 -----------SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172
                      S PE        ++KGD  +  IAAA+++AKV RD  MR  H   P YG
Sbjct: 150 PDLFAGAGNLVSSPE---VSVETLVKGDGKAAVIAAAAVLAKVYRDAFMRSLHD--PGYG 204

Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           +  +VGY T  H+  + E G S  HR T++
Sbjct: 205 WTRNVGYGTPAHKAGLAELGASVWHRKTWK 234


>gi|332674122|gb|AEE70939.1| ribonuclease HII [Helicobacter pylori 83]
          Length = 204

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 94/195 (48%), Gaps = 25/195 (12%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS- 82
           GIDE GRG LAG + VA ++ +       +  G+ DSKK+S KKR  L +KI +   I  
Sbjct: 4   GIDEAGRGCLAGSLFVAGVVCNEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEIKF 63

Query: 83  -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA------ 135
            +   S   ID   +      AI   +EN + +     IDG +        AF       
Sbjct: 64  WVVKKSANEIDNLGLGVCLKLAIQEILENGRSLTNKIKIDGNT--------AFGLNKRYS 115

Query: 136 ----VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +IKGD     IA AS++AK  +DR M   H  + +YG+D + GY T +H + + + 
Sbjct: 116 NIQTIIKGDEKIAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAMIKL 175

Query: 192 GPSCIHRLTFRPLRN 206
           G +  HR +F  L+N
Sbjct: 176 GATPFHRHSF-TLKN 189


>gi|294790566|ref|ZP_06755724.1| ribonuclease HII [Scardovia inopinata F0304]
 gi|294458463|gb|EFG26816.1| ribonuclease HII [Scardovia inopinata F0304]
          Length = 279

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 128/276 (46%), Gaps = 88/276 (31%)

Query: 10  PHFELEAMVR---EKNMWPVAGIDEVGRGALAGPVVVAAII-----LDPNN--------- 52
           PH+ +EA +    +   W + G DEVGRG LAGPV+V A       L P +         
Sbjct: 3   PHWRVEAALAAGPDNPQW-IIGCDEVGRGCLAGPVMVGACAFRLPDLRPPDYASEHKFDY 61

Query: 53  -----------IPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKA- 99
                      IP G+ DSK ++ KKRE LY+ + S S   ++ SAS++ ID+  I  A 
Sbjct: 62  ESDYESAMTASIPSGLKDSKLLTEKKREALYDPLASWSDTWAVGSASNKEIDQVGIISAL 121

Query: 100 ------TLDAIYHAV-------------------------ENLQVIPRSALIDGRSIPED 128
                  LD I   +                           L  +P S ++DG   P D
Sbjct: 122 GLAAVRALDQIGQTISGSSSEAVDASEETEDTDDHSSREARGLSQLPASLILDG---PYD 178

Query: 129 ----------LPCQ-----AF-----AVIKGDSISLSIAAASIIAKVTRDRLM-RIAHK- 166
                     LP Q     AF      V+KGD    S+AAAS++AKVTRDR M R+A K 
Sbjct: 179 YISPILQSILLPDQIRSRFAFRLSVTTVVKGDQTCASVAAASVMAKVTRDRYMIRLADKN 238

Query: 167 -KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            ++  YG+  + GY TA+H++ IK+ GP+  HR+++
Sbjct: 239 PQWEPYGWARNKGYGTAQHRRAIKDLGPTSYHRVSW 274


>gi|315452719|ref|YP_004072989.1| ribonuclease HII [Helicobacter felis ATCC 49179]
 gi|315131771|emb|CBY82399.1| ribonuclease HII [Helicobacter felis ATCC 49179]
          Length = 195

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 91/186 (48%), Gaps = 10/186 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG   G + VA +  D N     +   + +SK++S  KR E   +I     I
Sbjct: 2   ILGIDEAGRGCWCGSLFVAGVSCDQNVASAFVRLELKESKQLSRTKRFEFATQIIQDTRI 61

Query: 82  S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI--PEDLPCQAF-AV 136
           +  + S S   ID   +     +AI   V  L  I    L DG ++   E    ++F A+
Sbjct: 62  TSVVVSKSAPEIDHKGLSVCMQEAITEIVSKLPTIKHVRL-DGNTLFKLEFAHLESFEAI 120

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           IKGD     IA ASI+AK  +DR M +  ++YP+YGF  H GY T  H   I + G    
Sbjct: 121 IKGDDKIPQIAMASILAKAHKDREMSVLDERYPEYGFARHCGYGTCTHALAIAKYGLIQE 180

Query: 197 HRLTFR 202
           HR +F+
Sbjct: 181 HRKSFK 186


>gi|307637994|gb|ADN80444.1| Ribonuclease H II [Helicobacter pylori 908]
 gi|325996599|gb|ADZ52004.1| Ribonuclease HII [Helicobacter pylori 2018]
 gi|325998189|gb|ADZ50397.1| Ribonuclease HII [Helicobacter pylori 2017]
          Length = 191

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 93/190 (48%), Gaps = 11/190 (5%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS- 82
           GIDE GRG L G + VA ++         +  G+ DSKK+S KKR  L  KI +   +  
Sbjct: 4   GIDEAGRGCLVGSLFVAGVVCGGKTALEFLEMGLKDSKKLSPKKRFFLENKIKTHDEVEF 63

Query: 83  -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138
            +   S + ID   +      AI   VEN   +     IDG +   + +  P     +IK
Sbjct: 64  FVVKKSAEAIDHLGLGACLKLAIQEIVENGCSLANEIKIDGNTAFGLNKRYP-NIQTIIK 122

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD     IA AS++AK  +DR M   H  + +YG+D + GY T +H + I + G +  HR
Sbjct: 123 GDETIAQIAMASVLAKAAKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHR 182

Query: 199 LTFRPLRNLS 208
            +F  L+N S
Sbjct: 183 HSF-TLKNRS 191


>gi|2352484|gb|AAC46185.1| RNAseH II [Lactococcus lactis subsp. cremoris MG1363]
          Length = 166

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 96/164 (58%), Gaps = 3/164 (1%)

Query: 45  AIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDA 103
           A+IL  N    G+NDSKK+   K   +  +I   A+ I +     + ID+ NI++AT  A
Sbjct: 1   AVILPKNCKIRGLNDSKKVPKSKHHAILSEIQEKALAIGVGIVDAEKIDEVNIYEATKIA 60

Query: 104 IYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163
           +  AV  L + P   LID   +  DLP     +I GD+ S SIAAASI+AKVTRD +M+ 
Sbjct: 61  MIQAVSKLSLKPEHLLIDAMVL--DLPIAQTKIIHGDARSASIAAASIVAKVTRDEMMKD 118

Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
              ++P+Y F+ + GY TAKH   + + G + IHR ++ P++++
Sbjct: 119 FALEFPEYDFEHNAGYGTAKHLAALTKYGITRIHRKSYEPIKSM 162


>gi|291277271|ref|YP_003517043.1| ribonuclease HII [Helicobacter mustelae 12198]
 gi|290964465|emb|CBG40315.1| ribonuclease HII [Helicobacter mustelae 12198]
          Length = 243

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 99/200 (49%), Gaps = 17/200 (8%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKI 75
           ++NM  + GIDE GRG+L G + V+ +    +        GI DSKK +   R+ L   +
Sbjct: 44  QENM--LCGIDEAGRGSLCGSLFVSGVACTKDLAQMLQIQGIKDSKKTTKNTRKNLANLL 101

Query: 76  --TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-----PED 128
             T      I   + + ID+  +     + +   ++NLQ      ++DG +      P  
Sbjct: 102 IHTPGIHFCIIEKTAKEIDEKGLSCCMRECLQSIIKNLQSFTSHFIMDGNTTFGFHPPP- 160

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
            P     +IKGD++   I+AAS++AK  +D  M    K YP+YGF SH GY T+ H   I
Sbjct: 161 -PLYLKTLIKGDALLPQISAASVLAKYAKDCEMMHLDKIYPNYGFASHSGYGTSAHIAQI 219

Query: 189 KEKGPSCIHRLTFRPLRNLS 208
           K  GP+  HR  F  L++L+
Sbjct: 220 KALGPTKEHRRNF--LKDLT 237


>gi|148272555|ref|YP_001222116.1| ribonuclease HII [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
 gi|147830485|emb|CAN01420.1| rnhB [Clavibacter michiganensis subsp. michiganensis NCPPB 382]
          Length = 219

 Score = 87.8 bits (216), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 16/206 (7%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKK 67
           P  +LE  +       V G DEVGRGALAGPV V   ++ P+ + F  G+ DSK +S K+
Sbjct: 6   PTLDLEHELLHAGAALVIGCDEVGRGALAGPVAVGMAVVGPDAVGFPPGLRDSKMLSEKR 65

Query: 68  REELYEKITSSAIIS-ISSASHQYIDKHNI-------HKATLDAIYHAVENLQVIPRSAL 119
           RE L+  +      S +  AS   +D+  I        +  L  ++HA   + ++    L
Sbjct: 66  REALHPVVAGWVRHSAVGMASAAEVDELGITACLGLAGRRALVELHHA--GVPLLDSVVL 123

Query: 120 IDGRS--IPEDL--PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
           +DG    +   L  P      +K D    S+AAAS++AKV RDR+M + H+  P+YG+  
Sbjct: 124 LDGAHDWLTPHLAHPVPVRLRVKADRDCASVAAASVLAKVERDRMMAVWHEDLPEYGWAG 183

Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTF 201
           + GY +A H   I+ +G S +HR T+
Sbjct: 184 NKGYGSAAHLDAIRARGASPLHRRTW 209


>gi|317013110|gb|ADU83718.1| ribonuclease HII [Helicobacter pylori Lithuania75]
          Length = 204

 Score = 87.8 bits (216), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 93/195 (47%), Gaps = 25/195 (12%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS- 82
           GIDE GRG LAG + VA ++ +       +  G+ DSKK+S KKR  L +KI +   +  
Sbjct: 4   GIDEAGRGCLAGSLFVAGVVCNDQTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEVKF 63

Query: 83  -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA------ 135
            +   S   ID   +      A+   +EN   +     IDG +        AF       
Sbjct: 64  FVVKKSTNEIDNLGLGACLKLAMQEILENGCSLANEIKIDGNT--------AFGLNKRYS 115

Query: 136 ----VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +IKGD     IA AS++AK  +DR M   H  + +YG+D + GY T +H + I + 
Sbjct: 116 NIQTIIKGDEKIAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKL 175

Query: 192 GPSCIHRLTFRPLRN 206
           G +  HR +F  L+N
Sbjct: 176 GATPFHRHSF-TLKN 189


>gi|242309717|ref|ZP_04808872.1| ribonuclease [Helicobacter pullorum MIT 98-5489]
 gi|239523718|gb|EEQ63584.1| ribonuclease [Helicobacter pullorum MIT 98-5489]
          Length = 204

 Score = 87.8 bits (216), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 90/184 (48%), Gaps = 7/184 (3%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSS 78
           N   + GIDE GRG + G + V  +IL P     +   + DSKK+S K R+ L  +I   
Sbjct: 13  NPLEICGIDEAGRGCIGGSLFVCGVILTPTFPKILLEQLQDSKKLSQKTRDNLAPQIQKY 72

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           A   +   S + ID   +     +++   + NLQ  P   L DG         Q   +IK
Sbjct: 73  AKFHLVKKSAEEIDTKGLSLCIKESLQEILTNLQA-PH-YLFDGNCNFGIHSLQT--LIK 128

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GDS   SI+AASI+AK  +D+        YP YGF SH GY T +H + I + G    HR
Sbjct: 129 GDSKIPSISAASILAKNAKDKESAKLDNLYPQYGFKSHKGYGTKEHLKAILDFGYCKEHR 188

Query: 199 LTFR 202
            +++
Sbjct: 189 KSYK 192


>gi|317178386|dbj|BAJ56174.1| ribonuclease HII [Helicobacter pylori F30]
          Length = 204

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 94/197 (47%), Gaps = 25/197 (12%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG LAG + VA ++         +  G+ DSKK+S KKR  L +KI +   +
Sbjct: 2   ILGIDEAGRGCLAGSLFVAGVVCGEKTASEFLSMGLKDSKKLSPKKRFFLEDKIKTHGEM 61

Query: 82  S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA---- 135
              +   S   ID   +      AI   +EN + +     IDG +        AF     
Sbjct: 62  KFWVVKKSANEIDGLGLGACLKLAIQEILENGRSLANKIKIDGNT--------AFGLNKR 113

Query: 136 ------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                 +IKGD     IA AS++AK  +DR M   H  + +YG+D + GY T +H + + 
Sbjct: 114 YSNIETIIKGDEKIAQIAMASVLAKAFKDREMLKLHALFKEYGWDKNCGYGTKQHIEAMI 173

Query: 190 EKGPSCIHRLTFRPLRN 206
           + G +  HR +F  L+N
Sbjct: 174 KLGATPFHRHSF-TLKN 189


>gi|300741389|ref|ZP_07071410.1| ribonuclease HII [Rothia dentocariosa M567]
 gi|300380574|gb|EFJ77136.1| ribonuclease HII [Rothia dentocariosa M567]
          Length = 264

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/216 (34%), Positives = 103/216 (47%), Gaps = 40/216 (18%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELYEKITSSAIISI 83
           +AG+DEVGRGALAGPV V   +LD  N  I  G+ DSK ++ K+RE L  +I      +I
Sbjct: 20  IAGLDEVGRGALAGPVSVGVAVLDQQNQRILEGLTDSKALTPKRREALIPRIQKWCSYAI 79

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSI-----PEDL-----P 130
              +   ID   +  A   A   A+ +L    + P +AL+DG+       PE+L     P
Sbjct: 80  GHTTPAEIDVLGMTYALRLAAQRALADLAYRGLYPEAALLDGKHDWLSPPPENLFDSMDP 139

Query: 131 CQ-------------------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165
                                         +IKGD    SIAAAS++AKV RD  M    
Sbjct: 140 VHRRYEELLHRVWNGANSAVEKGWSGPVTTIIKGDYQCASIAAASVVAKVDRDAFMESLS 199

Query: 166 KKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            + P YG+  + GY +  H+Q I E GPS  HRL++
Sbjct: 200 AENPHYGWVKNKGYGSVAHRQAISEYGPSIYHRLSW 235


>gi|256371394|ref|YP_003109218.1| Ribonuclease H [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007978|gb|ACU53545.1| Ribonuclease H [Acidimicrobium ferrooxidans DSM 10331]
          Length = 200

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 97/191 (50%), Gaps = 17/191 (8%)

Query: 28  GIDEVGRGALAGPVVVAA----------IILDPNNIPFGINDSKKISHKKREELYEKITS 77
           GIDEVGRGA AGPVVV A          I+  P     G+ DSK +S   RE     + +
Sbjct: 12  GIDEVGRGAWAGPVVVGAARGSVAAAAAILAHPRG---GVRDSKALSPAAREAALGALEA 68

Query: 78  SAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136
           + +  ++ SAS + IDK  +  A   A + A+     +    L+DGR +P     +   +
Sbjct: 69  AGLELTVGSASAREIDKLGLTGALRLAAHRALGAASEL--EVLLDGR-VPYVEAGRVHCI 125

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           + GD     IAAASI+AKV RD  M    +    YGF  H GY TA+H++ + E G +  
Sbjct: 126 VGGDRRHPLIAAASIVAKVRRDAFMVALDELAAGYGFARHKGYGTAEHRRALSEHGVTPW 185

Query: 197 HRLTFRPLRNL 207
           HR +F P+  +
Sbjct: 186 HRRSFGPIGGM 196


>gi|326333667|ref|ZP_08199904.1| ribonuclease HII [Nocardioidaceae bacterium Broad-1]
 gi|325948573|gb|EGD40676.1| ribonuclease HII [Nocardioidaceae bacterium Broad-1]
          Length = 218

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 94/197 (47%), Gaps = 21/197 (10%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKREELYEKITSSAIIS- 82
           +  +DEVGRGAL GPV +  +++       P G+ DSK ++ + RE L  K+   A+ S 
Sbjct: 9   LGAVDEVGRGALCGPVSIGIVVISAATRTAPQGVRDSKLLTPEARETLAPKVRRWAVDSA 68

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ---------- 132
           +  A    ID+  I  A   A   A+  L V P + L+DG       P Q          
Sbjct: 69  VGHALASEIDEVGIMAAMRLAGQRALSALDVRPDALLLDGNHNYLTPPAQEGLFGEVSAM 128

Query: 133 --------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
                      +IK D    ++AAASI+AK +RD LM   H++YPDY +  + GY    H
Sbjct: 129 VEEIEVPPVTTMIKADMKCAAVAAASILAKTSRDALMVALHEEYPDYAWADNKGYSAPAH 188

Query: 185 QQVIKEKGPSCIHRLTF 201
              ++  GPS  HR ++
Sbjct: 189 IAALERLGPSAYHRRSW 205


>gi|212716712|ref|ZP_03324840.1| hypothetical protein BIFCAT_01647 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660416|gb|EEB20991.1| hypothetical protein BIFCAT_01647 [Bifidobacterium catenulatum DSM
           16992]
          Length = 259

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 116/254 (45%), Gaps = 66/254 (25%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-------------------DP 50
           P  +LE  + E+    + G DEVGRG+LAGPV+V A  +                    P
Sbjct: 7   PTLDLERAIAEQGYDVIVGFDEVGRGSLAGPVMVGAAAIWARDLDGAAGASQGGSQESSP 66

Query: 51  NNIPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNI------------- 96
             +P G+ DSK ++  KRE +++++    A  ++ +AS+  ID+  I             
Sbjct: 67  LEVPKGVADSKMLTEHKREAIFDELEQWCAAWAVGAASNTEIDEWGISYALGVAALRALA 126

Query: 97  -----------HKATLDAIYHAVENLQVIPRSALIDGRS----------------IPEDL 129
                        A +     + E L  +   A++DG +                IP D+
Sbjct: 127 EAERKLGIGGGESAGIAGSSESSEALNNLKIGAILDGPNDYITKALNTFDAPDVPIPADV 186

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLM--RIAHKKYPDYGFDSHVGYPTAKHQQV 187
            C+    +KGD    ++A A++IAKVTRDRLM    A  +Y  Y + ++ GY +A H+  
Sbjct: 187 TCK----VKGDRHCATVATAAVIAKVTRDRLMVKLAAQPQYAPYEWANNKGYGSAAHRDA 242

Query: 188 IKEKGPSCIHRLTF 201
           I E GPS +HRL++
Sbjct: 243 IAEFGPSDLHRLSW 256


>gi|213029071|ref|ZP_03343518.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 109

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 61/104 (58%), Gaps = 1/104 (0%)

Query: 103 AIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162
           A+  AV  L + P   LIDG   PE LP  + AV+KGDS    I+AASI+AKVTRD  M 
Sbjct: 1   AMQRAVAGLHIAPEYVLIDGNRCPE-LPVPSMAVVKGDSRVAEISAASILAKVTRDAEMA 59

Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
                +P YGF  H GYPTA H + + + G +  HR +F P++ 
Sbjct: 60  ALDIVFPQYGFAQHKGYPTAFHLEKLAQYGATAHHRRSFAPVKR 103


>gi|297242877|ref|ZP_06926815.1| ribonuclease HII [Gardnerella vaginalis AMD]
 gi|296889088|gb|EFH27822.1| ribonuclease HII [Gardnerella vaginalis AMD]
          Length = 255

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 124/251 (49%), Gaps = 56/251 (22%)

Query: 4   NSIPERPHFELEA-MVREKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGI 57
           ++IP  P F+ E  ++ E   W V G+DEVGRG+LAGPV+V A ++       N +P G+
Sbjct: 6   SNIPLVPSFKYEQDLLSEGYDW-VIGLDEVGRGSLAGPVMVGAAVIGIKQVKENYMPEGL 64

Query: 58  NDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNIHK----ATLDAIYHAVENLQ 112
            DSK +S K+REELYE +       ++ S ++  ID+  I      A L AI    E+++
Sbjct: 65  ADSKLLSEKRREELYEPLQKWCTTWAVGSCTNTEIDEWGISYALGVAALKAISKVEEDIK 124

Query: 113 VIPRS--------------------------ALIDGRS--------------IPEDLPCQ 132
            +  S                          A++DG                +PE  P +
Sbjct: 125 KLSFSVNADSGENTCAKLGADSGANSNFRIAAILDGPCDYIDKVANTFDAPYVPE--PVK 182

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK--KYPDYGFDSHVGYPTAKHQQVIKE 190
              ++K D    S+AAA+++AKVTRD LM    K  +Y  Y + S+ GY +  H+  IK+
Sbjct: 183 VHTLVKADRQCASVAAAAVLAKVTRDNLMVSLAKNPQYAAYDWASNKGYGSLAHRNAIKK 242

Query: 191 KGPSCIHRLTF 201
            GPS +HRL++
Sbjct: 243 VGPSDLHRLSW 253


>gi|293189838|ref|ZP_06608552.1| ribonuclease HII [Actinomyces odontolyticus F0309]
 gi|292821253|gb|EFF80198.1| ribonuclease HII [Actinomyces odontolyticus F0309]
          Length = 223

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/200 (37%), Positives = 108/200 (54%), Gaps = 25/200 (12%)

Query: 26  VAGIDEVGRGALAGPVV--VAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
           VAG+DEVGRGALAGPV   VA I +D   +P G+ DSK ++ ++RE L + +    +  +
Sbjct: 19  VAGMDEVGRGALAGPVAVGVAFIGIDAAPVPEGLTDSKALTTRRREALVDPVREWTLACA 78

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR----SIPEDL------ 129
           +  AS Q ID   I  A   A + A+  +    ++P   L+DG     S P+DL      
Sbjct: 79  VGYASPQEIDDWGIIAALRLAGWRALAEVASHGLVPGGVLLDGSHDWLSAPDDLFGAIDG 138

Query: 130 PCQAFAV-------IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
           P   F V       +K D+    +AAAS++AKV RD LM  A  + P YG+ S+ GY +A
Sbjct: 139 PGDPFGVDLPVQMQVKADASCAVVAAASVLAKVERDHLM--AELEDPGYGWASNKGYGSA 196

Query: 183 KHQQVIKEKGPSCIHRLTFR 202
            H + I E G S  HR +++
Sbjct: 197 AHTRAIVELGVSDQHRRSWK 216


>gi|309811499|ref|ZP_07705281.1| ribonuclease HII [Dermacoccus sp. Ellin185]
 gi|308434550|gb|EFP58400.1| ribonuclease HII [Dermacoccus sp. Ellin185]
          Length = 233

 Score = 85.5 bits (210), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 102/216 (47%), Gaps = 19/216 (8%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKK 67
           P   LE  +       VAG+DEVGRGALAGPV V   ++D   + +P G+ DSK +   K
Sbjct: 6   PTLRLERQLLRTGYTLVAGMDEVGRGALAGPVSVGVSVVDAATSTVPQGVKDSKLVPEPK 65

Query: 68  REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI- 125
           R +L  ++   A+  ++  AS   ID   + +A   A   A+  L V P   ++DG+   
Sbjct: 66  RPDLARRVRRWALDGAVGHASPTEIDALGMTRALRLAGTRALAQLSVRPDVVILDGKHDW 125

Query: 126 --------------PEDLPC-QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170
                         PE  P       IK D    S+A AS++AKV RD +M  A + +P 
Sbjct: 126 LSEPETVGLLGLLEPESAPTWHVVTQIKADMRCSSVAGASLLAKVERDAMMVDAARDHPV 185

Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           YG+  + GY    H   I   G   +HR +++  R+
Sbjct: 186 YGWGINKGYSAPDHLAAIAAHGACDLHRRSWKTFRD 221


>gi|184200715|ref|YP_001854922.1| ribonuclease HII [Kocuria rhizophila DC2201]
 gi|183580945|dbj|BAG29416.1| ribonuclease HII [Kocuria rhizophila DC2201]
          Length = 266

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 110/238 (46%), Gaps = 41/238 (17%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD------------------P 50
           RP  +LE  +       VAG+DEVGRGALAGP  V  ++LD                  P
Sbjct: 32  RPGLDLETELASSGARFVAGMDEVGRGALAGPASVGLVVLDVPRLLAGSGHDAAAPDPAP 91

Query: 51  NNIPF--GINDSKKISHKKREELYEKI-TSSAIISISSASHQYIDKHNIHKATLDAIYHA 107
            ++P   G+ DSK +S  +R  L  ++ T +A  ++  A    ID   I  A   A   A
Sbjct: 92  VSVPAWDGVRDSKALSAARRAVLAPRVATWAAGTAVGHAQPHEIDALGITAALRLAGLRA 151

Query: 108 VENLQV--IPRSALI-DG-------------RSIPEDLPCQAFAVIKGDSISLSIAAASI 151
           +  +     P  ALI DG                P  LP     ++K D+  +S+AAASI
Sbjct: 152 LAAVTSGGTPVDALILDGSHNWLEAPAVLGQEEDPVALPPVVRTLVKADARCVSVAAASI 211

Query: 152 IAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209
           +AKV RD +M    +++P Y + ++ GY +A H+  +   G +  HR ++    NL V
Sbjct: 212 VAKVERDAIMVELGQEHPAYEWGANKGYGSAAHRAALVTHGTTRHHRRSW----NLGV 265


>gi|311113471|ref|YP_003984693.1| ribonuclease HII [Rothia dentocariosa ATCC 17931]
 gi|310944965|gb|ADP41259.1| ribonuclease HII [Rothia dentocariosa ATCC 17931]
          Length = 264

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 104/216 (48%), Gaps = 40/216 (18%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELYEKITSSAIISI 83
           +AG+DEVGRGALAGPV V   +LD  N  I  G+ DSK ++ K+RE L  +I      +I
Sbjct: 20  IAGLDEVGRGALAGPVSVGVAVLDQQNQQILEGLTDSKALTPKRREALIPRIQKWCSYAI 79

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR-------------SIP- 126
              +   ID   +  A   A   A+ +L    + P + L+DG+             SI  
Sbjct: 80  GHTTPAEIDVLGMTYALRLAAQRALADLAHRGLYPEAVLLDGKHDWLSPQPANLLDSIDP 139

Query: 127 -----EDLPCQAF----------------AVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165
                E+L  + +                 +IKGD    SIAAAS++AKV RD  M    
Sbjct: 140 VYRRYEELLHRIWNGANSAAEKGWSGPVTTIIKGDYQCASIAAASVVAKVDRDAFMESLS 199

Query: 166 KKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            + P YG+  + GY +  H+Q I E GPS  HRL++
Sbjct: 200 AENPHYGWAKNKGYGSVAHRQAISEYGPSIYHRLSW 235


>gi|330835291|ref|YP_004410019.1| ribonuclease HII [Metallosphaera cuprina Ar-4]
 gi|329567430|gb|AEB95535.1| ribonuclease HII [Metallosphaera cuprina Ar-4]
          Length = 208

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 89/167 (53%), Gaps = 17/167 (10%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS-SAIIS 82
           GIDE GRG L GP++VA I+LD          G+ DSK+++ K+REEL+  I   S  I+
Sbjct: 4   GIDEAGRGCLIGPMIVAGIVLDEKGREELKELGVKDSKRLTRKRREELFNAIIERSKGIA 63

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVI-PRSALID--GR-----SIPEDLPCQAF 134
           ++ A    ID +N++  T   +   + +L  + P+   +D  G+      + E L   A 
Sbjct: 64  VAKAEPLEIDSNNLNALTYRKVSEIISSLSWLNPKIVTVDKVGKETEVIELIERLGFVAN 123

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
            V K D + +  ++ASIIAKV RD ++     KY D+G     GYP+
Sbjct: 124 VVHKADELFIEASSASIIAKVIRDNIIERLKLKYGDFG----SGYPS 166


>gi|225351148|ref|ZP_03742171.1| hypothetical protein BIFPSEUDO_02736 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158604|gb|EEG71846.1| hypothetical protein BIFPSEUDO_02736 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 249

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 119/243 (48%), Gaps = 54/243 (22%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----------------- 52
           P  +LE  + E+    + G DEVGRG+LAGPV+V A  +   +                 
Sbjct: 7   PTLDLERAIAEQGYDVIVGFDEVGRGSLAGPVMVGAAAIWARDLDGPAGASQGGSQESSH 66

Query: 53  --IPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDK----HNIHKATLDAIY 105
             +P G+ DSK ++  KRE +++++ S  A  ++ +AS++ ID+    H +  A L A+ 
Sbjct: 67  LEVPKGVADSKMLTEHKREAIFDELKSWCASWAVGAASNKEIDEWGISHALGVAALRALA 126

Query: 106 HAVENLQV----------IPRSALIDGRSIPED---------------LPCQAFAVIKGD 140
            A   L +          +   A++DG   P D               +P      +KGD
Sbjct: 127 QAEAKLGIDGNGMLSGKPVKVGAILDG---PNDYITKTLNTFDAPEVPVPANVTTKVKGD 183

Query: 141 SISLSIAAASIIAKVTRDRLM--RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
              +++AAA++IAKVTRDRLM    A  +Y  Y +  + GY +A H+  I E GPS +HR
Sbjct: 184 RYCVAVAAAAVIAKVTRDRLMVELGAQPQYEPYEWAHNKGYGSAAHRDAIAEFGPSDLHR 243

Query: 199 LTF 201
           L++
Sbjct: 244 LSW 246


>gi|283458215|ref|YP_003362833.1| ribonuclease HII [Rothia mucilaginosa DY-18]
 gi|283134248|dbj|BAI65013.1| ribonuclease HII [Rothia mucilaginosa DY-18]
          Length = 278

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 111/244 (45%), Gaps = 49/244 (20%)

Query: 4   NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSK 61
            + P     E E  +       VAGIDEVGRG++AGPV V   IL P+      G+ DSK
Sbjct: 21  KATPPAADLEYEQQLFASGARTVAGIDEVGRGSMAGPVTVGVAILTPDATLEVGGLIDSK 80

Query: 62  KISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR----- 116
            +S  +RE +  +I     +++       ID+  +   TL     A   L  + R     
Sbjct: 81  ALSPARRESMVPEIRQWCAVAVGHVEPADIDRLGM---TLSLRLAAQRALAELARRGYRA 137

Query: 117 -SALIDGR----SIP-EDL-------PCQA--------------------------FAVI 137
            +AL+DG+    + P EDL       P QA                            VI
Sbjct: 138 DAALLDGKHDWFTPPQEDLFSALAPDPAQAHYNALLAQAWEGAGEGGAGEPAQMPVTMVI 197

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGD    SIAAAS++AKV RD LM     +YP YG+  + GY +A H++ I  +GPS  H
Sbjct: 198 KGDYKCASIAAASVVAKVERDELMVQLDTRYPGYGWAKNKGYGSAAHREAISVQGPSPQH 257

Query: 198 RLTF 201
           RL++
Sbjct: 258 RLSW 261


>gi|255326009|ref|ZP_05367097.1| ribonuclease HII [Rothia mucilaginosa ATCC 25296]
 gi|255296900|gb|EET76229.1| ribonuclease HII [Rothia mucilaginosa ATCC 25296]
          Length = 276

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 111/243 (45%), Gaps = 47/243 (19%)

Query: 3   CNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDS 60
             + P     E E  +       VAGIDEVGRG++AGPV V   IL P+      G+ DS
Sbjct: 20  AKATPPAADLEYEQQLFASGARTVAGIDEVGRGSMAGPVTVGVAILTPDATLEVGGLIDS 79

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR---- 116
           K +S  +RE +  +I     +++       ID+  +   TL     A   L  + R    
Sbjct: 80  KALSPARRESMVPEIRQWCAVAVGHVEPADIDRLGM---TLSLRLAAQRALAELARRGYR 136

Query: 117 --SALIDGR----SIP-EDL-------PCQA------------------------FAVIK 138
             +AL+DG+    + P EDL       P QA                          VIK
Sbjct: 137 ADAALLDGKHDWFTPPQEDLFSALAPDPAQAHYNALLAQAWEGAGGAGEPAQMPVTMVIK 196

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD    SIAAAS++AKV RD LM     +YP YG+  + GY +A H++ I  +GPS  HR
Sbjct: 197 GDYKCASIAAASVVAKVERDELMVQLDIRYPGYGWAKNKGYGSAAHREAISVQGPSPQHR 256

Query: 199 LTF 201
           L++
Sbjct: 257 LSW 259


>gi|227826588|ref|YP_002828367.1| ribonuclease HII [Sulfolobus islandicus M.14.25]
 gi|227829230|ref|YP_002831009.1| ribonuclease HII [Sulfolobus islandicus L.S.2.15]
 gi|229577999|ref|YP_002836397.1| ribonuclease HII [Sulfolobus islandicus Y.G.57.14]
 gi|229583752|ref|YP_002842253.1| ribonuclease HII [Sulfolobus islandicus M.16.27]
 gi|238618674|ref|YP_002913499.1| ribonuclease HII [Sulfolobus islandicus M.16.4]
 gi|284996585|ref|YP_003418352.1| hypothetical protein LD85_0182 [Sulfolobus islandicus L.D.8.5]
 gi|227455677|gb|ACP34364.1| ribonuclease HII [Sulfolobus islandicus L.S.2.15]
 gi|227458383|gb|ACP37069.1| ribonuclease HII [Sulfolobus islandicus M.14.25]
 gi|228008713|gb|ACP44475.1| ribonuclease HII [Sulfolobus islandicus Y.G.57.14]
 gi|228018801|gb|ACP54208.1| ribonuclease HII [Sulfolobus islandicus M.16.27]
 gi|238379743|gb|ACR40831.1| ribonuclease HII [Sulfolobus islandicus M.16.4]
 gi|284444480|gb|ADB85982.1| hypothetical protein LD85_0182 [Sulfolobus islandicus L.D.8.5]
 gi|323473667|gb|ADX84273.1| ribonuclease HII [Sulfolobus islandicus REY15A]
 gi|323476318|gb|ADX81556.1| ribonuclease HII [Sulfolobus islandicus HVE10/4]
          Length = 212

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 23/198 (11%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA-IIS 82
           GIDE GRGAL GP++VA + +  + + F    G+ DSK+++ ++RE+L++ I S+    +
Sbjct: 4   GIDEAGRGALIGPMIVAGVAISDSKLKFLKGIGVKDSKQLTRERREKLFDIIASTVDAFT 63

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVI-PRSALID--GRSIP-----EDLPCQAF 134
           +       ID +N++  T DA+   + +L V  P    +D  G   P       L  ++ 
Sbjct: 64  VVKVFPYEIDNYNLNDLTYDAVSKIILSLSVFNPEIVTVDKVGEEKPVIELIRKLGYKSN 123

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----TAKHQQVIKE 190
            V K D + +  +AASIIAKV RD  +    K Y D+G     GYP    T K  +   E
Sbjct: 124 VVHKADVLFVEASAASIIAKVIRDNYIDELKKVYGDFG----SGYPADPRTIKWLKSFYE 179

Query: 191 KGPS--CIHRLTFRPLRN 206
           K P+   I R +++ LR+
Sbjct: 180 KNPNPPPIVRRSWKILRS 197


>gi|224417741|ref|ZP_03655747.1| ribonuclease HII RNase HII [Helicobacter canadensis MIT 98-5491]
 gi|253827085|ref|ZP_04869970.1| ribonuclease HII [Helicobacter canadensis MIT 98-5491]
 gi|253510491|gb|EES89150.1| ribonuclease HII [Helicobacter canadensis MIT 98-5491]
          Length = 204

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 91/186 (48%), Gaps = 13/186 (6%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISHKKREELYEKITSS 78
           N   + GIDE GRG + G + V  +IL    P ++   + DSKK+S K R+ L  +I   
Sbjct: 13  NPLEICGIDEAGRGCIGGSLFVCGVILGKSFPQSLLSQLQDSKKLSPKVRDTLAPQIKQY 72

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA--LIDGRSIPEDLPCQAF-A 135
           A   +   + Q ID   +     +A+   +  L    +SA  L DG     +   Q+   
Sbjct: 73  AQFHLVKKTAQEIDLKGLSLCLKEALQEILTYL----KSAHYLFDGNC---NFKIQSLQT 125

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           +IKGDS   +I+AASI+AK  +D+        YP YGF SH GY T  H + I + G   
Sbjct: 126 LIKGDSKVYAISAASILAKNAKDKESMELDLIYPQYGFKSHKGYGTKAHIEAISKFGYCK 185

Query: 196 IHRLTF 201
            HR ++
Sbjct: 186 EHRKSY 191


>gi|229583211|ref|YP_002841610.1| ribonuclease HII [Sulfolobus islandicus Y.N.15.51]
 gi|228013927|gb|ACP49688.1| ribonuclease HII [Sulfolobus islandicus Y.N.15.51]
          Length = 212

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 104/199 (52%), Gaps = 25/199 (12%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYE--KITSSAII 81
           GIDE GRGAL GP++VA + +  + + F    G+ DSK+++ ++RE+L++   IT  A  
Sbjct: 4   GIDEAGRGALIGPMIVAGVAISDSKLKFLKGIGVKDSKQLTRERREKLFDIIAITVDAFT 63

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVI-PRSALID--GRSIP-----EDLPCQA 133
            +    ++ ID +N++  T DA+   + +L V  P    +D  G   P       L  ++
Sbjct: 64  VVKVFPYE-IDNYNLNDLTYDAVSKIILSLSVFNPEIVTVDKVGEEKPVIELIRKLGYKS 122

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----TAKHQQVIK 189
             V K D + +  +AASIIAKV RD  +    K Y D+G     GYP    T K  +   
Sbjct: 123 NVVHKADVLFVEASAASIIAKVIRDNYIDELKKVYGDFG----SGYPADPRTIKWLKSFY 178

Query: 190 EKGPS--CIHRLTFRPLRN 206
           EK P+   I R +++ LR+
Sbjct: 179 EKNPNPPPIVRRSWKILRS 197


>gi|313141283|ref|ZP_07803476.1| ribonuclease [Helicobacter canadensis MIT 98-5491]
 gi|313130314|gb|EFR47931.1| ribonuclease [Helicobacter canadensis MIT 98-5491]
          Length = 194

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 89/184 (48%), Gaps = 9/184 (4%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISHKKREELYEKITSS 78
           N   + GIDE GRG + G + V  +IL    P ++   + DSKK+S K R+ L  +I   
Sbjct: 3   NPLEICGIDEAGRGCIGGSLFVCGVILGKSFPQSLLSQLQDSKKLSPKVRDTLAPQIKQY 62

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF-AVI 137
           A   +   + Q ID   +     +A+   +  L+      L DG     +   Q+   +I
Sbjct: 63  AQFHLVKKTAQEIDLKGLSLCLKEALQEILTYLK--SAHYLFDGNC---NFKIQSLQTLI 117

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGDS   +I+AASI+AK  +D+        YP YGF SH GY T  H + I + G    H
Sbjct: 118 KGDSKVYAISAASILAKNAKDKESMELDLIYPQYGFKSHKGYGTKAHIEAISKFGYCKEH 177

Query: 198 RLTF 201
           R ++
Sbjct: 178 RKSY 181


>gi|134298779|ref|YP_001112275.1| ribonuclease H [Desulfotomaculum reducens MI-1]
 gi|134051479|gb|ABO49450.1| Ribonuclease H [Desulfotomaculum reducens MI-1]
          Length = 355

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/179 (36%), Positives = 90/179 (50%), Gaps = 5/179 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84
           AGIDEVG  ++AGP+V A ++L   +NIP    DSK+++ K  EE+   I   A    I+
Sbjct: 89  AGIDEVGVSSIAGPMVAAVVVLPHDHNIPGIPRDSKEMTLKSIEEISSLIFEKADFWHIA 148

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQ-VIPR-SALIDGRSIPEDLPCQAFAVIKGDSI 142
           S S + ID      A           ++ V P+   ++DG+        Q  AV KGDSI
Sbjct: 149 SISPKEIDDIGPELAREKLWMECANKVRSVFPKIRIIVDGKDKIPGFTKQN-AVSKGDSI 207

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
              ++AA+I+AK   D  MRI H  YP Y F  + GYP  +H   IK  G    HR+  
Sbjct: 208 FSGVSAAAIVAKQYCDNEMRILHNYYPQYNFSKNKGYPVYEHYVAIKNYGICPSHRINM 266


>gi|332670021|ref|YP_004453029.1| ribonuclease H [Cellulomonas fimi ATCC 484]
 gi|332339059|gb|AEE45642.1| Ribonuclease H [Cellulomonas fimi ATCC 484]
          Length = 272

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 108/219 (49%), Gaps = 30/219 (13%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKK 67
           PH   E ++       VAG+DEVGRG+LAGPV V  +++D    + P G+ DSK ++   
Sbjct: 20  PHLRHERVLLRDGARLVAGMDEVGRGSLAGPVSVGVVVVDVATRSAPRGVADSKLLTPAA 79

Query: 68  REELYEKITSSAII-SISSASHQYIDKHNIHKA-------TLDAIYHAVENLQVIPRSAL 119
           R  L   +    +  ++  AS + ID   I  A        L+ ++ AV  + V+    L
Sbjct: 80  RTALLPALGRWGVARAVGHASAEEIDAVGIIAALRLAGTRALETVHAAVGPVDVV----L 135

Query: 120 IDGR----SIP--EDL----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163
           +DG     S P  +DL          P +    +K D    ++AAAS++AK  RD +M  
Sbjct: 136 LDGSHDWLSGPTQQDLFAAVDASAPTPPRVLTRVKADRTCATVAAASVLAKCERDAVMVD 195

Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              ++P+Y +D + GY +  H   +++ GP  +HR ++R
Sbjct: 196 LAARHPEYRWDENKGYSSPDHLAALRDHGPCVLHRRSWR 234


>gi|154509166|ref|ZP_02044808.1| hypothetical protein ACTODO_01687 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798800|gb|EDN81220.1| hypothetical protein ACTODO_01687 [Actinomyces odontolyticus ATCC
           17982]
          Length = 223

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/200 (37%), Positives = 106/200 (53%), Gaps = 25/200 (12%)

Query: 26  VAGIDEVGRGALAGPVV--VAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
           VAG+DEVGRGALAGPV   VA I +D   +P G+ DSK ++ ++RE L + +    +  +
Sbjct: 19  VAGMDEVGRGALAGPVAVGVAFIGIDAAPVPEGLTDSKALTARRREALVDPVREWTLACA 78

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR----SIPEDL------ 129
           +  AS Q ID   I  A   A   A+  +    ++P   L+DG     S P+DL      
Sbjct: 79  VGYASPQEIDDWGIIAALRLAGRRALAEVASHGLVPGGVLLDGSHDWLSAPDDLFGAIDG 138

Query: 130 PCQAFAV-------IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
           P   F V       +K D+    +AAAS++AKV RD LM  A  + P YG+ S+ GY + 
Sbjct: 139 PGDPFGVDLPVQMQVKADASCAVVAAASVLAKVERDHLM--AELEDPGYGWASNKGYGST 196

Query: 183 KHQQVIKEKGPSCIHRLTFR 202
            H + I E G S  HR +++
Sbjct: 197 AHTRAIVELGVSDQHRRSWK 216


>gi|206896037|ref|YP_002247054.1| ribonuclease HII [Coprothermobacter proteolyticus DSM 5265]
 gi|206738654|gb|ACI17732.1| ribonuclease HII [Coprothermobacter proteolyticus DSM 5265]
          Length = 202

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 102/193 (52%), Gaps = 6/193 (3%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P +ELE  +  K   PV G+DEVGRGA+AGP++V A+    ++      DSK++S  +R+
Sbjct: 5   PSWELEKGLFGK---PVVGVDEVGRGAVAGPLLVCAVRFH-SSPEVKWRDSKQMSPLQRK 60

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPED 128
            ++  I  S+   I  A+   ID+  I      A   A+  + +     + DG R +  +
Sbjct: 61  SVFANIVESSCFGIGLAAPWDIDRFGISFCLKQAAEEALAEIPLDDAIVVFDGKRPLTTE 120

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           +P     ++KGD +  S+AAAS++AKV RD LM       P Y F +H GY T  H + I
Sbjct: 121 VP-DYQCMVKGDVLLPSVAAASVVAKVIRDELMVCLDSLLPGYEFSAHKGYGTKTHLEAI 179

Query: 189 KEKGPSCIHRLTF 201
           +  G +  HR +F
Sbjct: 180 RCFGITAQHRRSF 192


>gi|168070408|ref|XP_001786800.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660445|gb|EDQ48386.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 240

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 3/99 (3%)

Query: 104 IYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR- 162
           +  AVE+L V P   L+D  ++  D P    A+I GD++S SI AASI+AKVTRDRL + 
Sbjct: 1   MKQAVESLGVRPCHLLVDAETVDLDFP--QTAIIHGDAVSQSIGAASILAKVTRDRLCKE 58

Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           I    YP YG   H GY T  H+ ++ E GPS +HR +F
Sbjct: 59  IWDLHYPAYGIAVHKGYATRHHRSMLIEHGPSPLHRRSF 97


>gi|291533379|emb|CBL06492.1| Ribonuclease HII [Megamonas hypermegale ART12/1]
          Length = 136

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 76/117 (64%), Gaps = 1/117 (0%)

Query: 91  IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAAS 150
           ID+ NI++A ++ +Y A+  L   P + LID   + E L     ++IKGD+ S SIAAAS
Sbjct: 17  IDRVNIYQAAMNGMYEAIYGLNPKPDAVLIDAMPL-ESLDIYHQSIIKGDAKSASIAAAS 75

Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           I+AKV RDR+M    K YP YGF  + GY T++H + +++ GP  IHR +F P++++
Sbjct: 76  IVAKVERDRMMNEFDKIYPQYGFAKNKGYGTSEHLEALRKYGPCEIHRKSFEPIKSM 132


>gi|171184725|ref|YP_001793644.1| ribonuclease HII [Thermoproteus neutrophilus V24Sta]
 gi|254807995|sp|B1YB67|RNH2_THENV RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|170933937|gb|ACB39198.1| ribonuclease HII [Thermoproteus neutrophilus V24Sta]
          Length = 198

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 106/206 (51%), Gaps = 38/206 (18%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSSA-----I 80
            G+DE GRG + GP+V+A ++ D   +   G+ DSK++S ++RE LY+ I  +A     +
Sbjct: 6   GGVDEAGRGPVVGPMVIAVVVGDGGVLARLGVRDSKRLSPERRERLYQLILEAADCVNYV 65

Query: 81  ISISSASHQYIDKHNIHKATLD----------AIYHAVENLQVIPR---SAL--IDGRSI 125
           +   +    Y+ +  ++   LD          A  + V++  V PR   SAL  I GR +
Sbjct: 66  VVEPAVVDTYVWRGLLNALELDYTAKLIELCPADVYYVDSPDVDPRRYGSALEFITGRRV 125

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
                    A+ KG+S+   +AAASI+AKV RDRL+ +  K+  D+G     GYP+    
Sbjct: 126 --------VAMHKGESVP-QVAAASIVAKVVRDRLVALLKKEVGDFGS----GYPSDPRT 172

Query: 186 QVIKEKG---PSCIHRLTFRPLRNLS 208
           +   + G   P C+ R ++R LR  S
Sbjct: 173 REWLKWGRLPPECV-RWSWRTLRGES 197


>gi|240147025|ref|ZP_04745626.1| ribonuclease HII [Roseburia intestinalis L1-82]
 gi|257200803|gb|EEU99087.1| ribonuclease HII [Roseburia intestinalis L1-82]
          Length = 116

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 71/117 (60%), Gaps = 2/117 (1%)

Query: 32  VGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-ISSASHQY 90
           +GRG LAGPVV  A+IL  +     INDSKK++  KREELY++I   A+ + I   S Q 
Sbjct: 1   MGRGPLAGPVVAGAVILPKDCDILYINDSKKLTAVKREELYDEIMEKAVAAGIGMVSPQR 60

Query: 91  IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147
           ID+ NI +AT +A+  A+  L+  P   L D  +IPE +      +IKGD+ S+SI 
Sbjct: 61  IDEINILQATYEAMREAISKLEPAPDILLNDAVTIPE-VTIPQVPIIKGDAKSISIG 116


>gi|237750687|ref|ZP_04581167.1| ribonuclease HII [Helicobacter bilis ATCC 43879]
 gi|229373777|gb|EEO24168.1| ribonuclease HII [Helicobacter bilis ATCC 43879]
          Length = 207

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 93/198 (46%), Gaps = 28/198 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYE---- 73
           NM  + GIDE GRG +AG + +A+++LD           I DSK+++  +R+E  +    
Sbjct: 10  NMALICGIDEAGRGCVAGSLFIASVMLDECYFESFKKLDIRDSKQLTQTQRQERADSIQE 69

Query: 74  ---------KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
                    KI S   ++I S       +  + +  L A  H         +S + DG +
Sbjct: 70  FLREHGGRVKIVSFDSVNIDSKGLGQCMQMGLKELLLHAKKHQC-------KSIIFDGNT 122

Query: 125 IPEDLPCQAF-AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
              +   Q    +IKGDS  + I+AASI+AK  +D  M   H  YP Y   S+ GY T  
Sbjct: 123 ---NFGVQEIDTLIKGDSKHVLISAASILAKTNKDSEMLTLHDLYPQYNLKSNKGYLTKA 179

Query: 184 HQQVIKEKGPSCIHRLTF 201
           H + I + G S IHR ++
Sbjct: 180 HIESIAKHGYSPIHRKSY 197


>gi|242398404|ref|YP_002993828.1| Ribonuclease HII [Thermococcus sibiricus MM 739]
 gi|259494074|sp|C6A1I4|RNH2_THESM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|242264797|gb|ACS89479.1| Ribonuclease HII [Thermococcus sibiricus MM 739]
          Length = 224

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 91/178 (51%), Gaps = 30/178 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA-I 80
           + GIDE GRG + GP+V+AA+++D + I      G+ DSKK+S KKREEL+EKI      
Sbjct: 3   LGGIDEAGRGPVVGPLVIAAVVIDESKIEKFEALGVKDSKKLSPKKREELFEKIIELVDD 62

Query: 81  ISISSASHQYIDKH--NIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI- 137
             I   S + IDK    ++   ++     + +L++ P    ID   + E    + F ++ 
Sbjct: 63  YFILELSPEDIDKREGTMNDFEVENFAKVLNSLKIKPDLVYIDAADVNE----ERFGIVV 118

Query: 138 --------------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                         K DS  + +AAASI+AKVTRD+ +    + Y + G     GYP+
Sbjct: 119 REKLSFYPKIIAEHKADSKYIPVAAASILAKVTRDKAIERLKEIYGNIG----SGYPS 172


>gi|328907963|gb|EGG27723.1| ribonuclease HII [Propionibacterium sp. P08]
          Length = 119

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 1/107 (0%)

Query: 95  NIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
            + +A +  +  AV  L + P   L DG  + + L      + KGDS+   +AAASI+AK
Sbjct: 2   GMQEADISGLRRAVARLGIEPGYVLSDGFPV-DGLTVPDLGMWKGDSVCACVAAASIVAK 60

Query: 155 VTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           V RDR+M    ++ P Y F  H GY TA H++ ++E GPSC HR+++
Sbjct: 61  VVRDRIMIAMDREVPGYDFAVHKGYATALHRRRLEELGPSCQHRMSY 107


>gi|212223919|ref|YP_002307155.1| ribonuclease HII [Thermococcus onnurineus NA1]
 gi|226736826|sp|B6YVT5|RNH2_THEON RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|212008876|gb|ACJ16258.1| ribonuclease HII [Thermococcus onnurineus NA1]
          Length = 227

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 22/174 (12%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA-I 80
           +AGIDE GRG + GP+V+AA+++D  N+P     G+ DSKK++ K+RE L+++I      
Sbjct: 3   LAGIDEAGRGPVLGPMVIAAVVVDEGNVPKLEELGVKDSKKLTPKRRERLFDEIVQLLDD 62

Query: 81  ISISSASHQYIDKH--NIHKATLDAIYHAVENLQVIPRSALIDGRSIPE----------- 127
             I     + ID     +++  ++    A+ +L+V P    ID   + E           
Sbjct: 63  YVILELWPEEIDSREGTLNEFEVENFVKALNSLKVKPDVVYIDAADVKEARFGEEIKAKL 122

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           D      A  K D   + ++AASI+AKV RDR +     +Y + G     GYP+
Sbjct: 123 DFEADIIAEHKADDKFVPVSAASILAKVARDRAIEKLKDQYGEIG----SGYPS 172


>gi|224437531|ref|ZP_03658489.1| ribonuclease HII [Helicobacter cinaedi CCUG 18818]
 gi|313143983|ref|ZP_07806176.1| ribonuclease HII [Helicobacter cinaedi CCUG 18818]
 gi|313129014|gb|EFR46631.1| ribonuclease HII [Helicobacter cinaedi CCUG 18818]
          Length = 239

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 104/234 (44%), Gaps = 53/234 (22%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSSA-- 79
           MW +AGIDE GRG + G + VA +I    NI  FG  DSKK+S K+RE +Y+ +  S   
Sbjct: 1   MW-LAGIDEAGRGCICGALFVAGVIGREENIAHFGAKDSKKLSPKQRERIYQTLLESQHK 59

Query: 80  ---IISISSASHQYIDKHNIHKATLDAI---------YHAVENL--QVIPRSA------- 118
               + ++      IDK  +  A  + I         +  ++NL  Q + ++        
Sbjct: 60  GEIGLFVAQIEAWEIDKFGLSIAMKNGIEQILCRIADFATLQNLIGQNVEQNTAKHNLLE 119

Query: 119 --------------------LIDGRS-----IPEDLPCQAFAV---IKGDSISLSIAAAS 150
                               ++DG +     IP  L      V   +K D I   ++ AS
Sbjct: 120 QDVEQNPTDSTDSKNALQEIIMDGNTTFQAKIPHILTQSGVGVQTLVKADDIMPIVSCAS 179

Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           I+AKV++DR M    K YP Y    + GY T +H++ I + G    HR +F+ L
Sbjct: 180 IVAKVSKDRQMHELDKLYPQYFLAKNKGYGTLQHKKAIAKNGYCPHHRKSFKIL 233


>gi|88855258|ref|ZP_01129923.1| ribonuclease HII [marine actinobacterium PHSC20C1]
 gi|88815786|gb|EAR25643.1| ribonuclease HII [marine actinobacterium PHSC20C1]
          Length = 211

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 100/192 (52%), Gaps = 20/192 (10%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKREELYEKIT--SSAII 81
           V G DEVGRGA+AGPV V    + P     P G+ DSK +S K+RE L E +T   + + 
Sbjct: 22  VIGCDEVGRGAIAGPVGVGMTAMTPAHGAWPIGLRDSKMLSQKRRE-LLEPLTLEWAPLS 80

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDLPCQAFAV 136
           ++  A    +D   I  A   A   A+  L      V+    L+DG +   D    A +V
Sbjct: 81  AVGYADATEVDSIGITAALGLAGKRALIQLHEAGVDVMASVVLLDGST---DWLSGALSV 137

Query: 137 -------IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                  +K D   +S+AAAS++AKV RDRLM  A  +YP Y + S+ GY +A H   I+
Sbjct: 138 APRVHTRVKADRDCVSVAAASVVAKVQRDRLMIEADGEYPGYHWPSNKGYGSAAHFDAIR 197

Query: 190 EKGPSCIHRLTF 201
           + G + +HR T+
Sbjct: 198 QLGATELHRHTW 209


>gi|70606743|ref|YP_255613.1| ribonuclease HII [Sulfolobus acidocaldarius DSM 639]
 gi|109896186|sp|Q4JA60|RNH2_SULAC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|68567391|gb|AAY80320.1| ribonuclease HII [Sulfolobus acidocaldarius DSM 639]
          Length = 212

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 90/177 (50%), Gaps = 29/177 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS-SAI 80
           + GIDE GRG+L GP+VVA + +D N + F    G+ DSKK++ KKRE L+  I   S  
Sbjct: 3   LVGIDEAGRGSLIGPMVVAGVAIDSNFLKFLSEIGVKDSKKLTRKKREYLFGVILEYSYA 62

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK-- 138
           IS+  A  + ID  N+++ T  A+      +Q+I   ++ +   +  D    A AV +  
Sbjct: 63  ISLVKAYPEEIDSENLNEITYRAM------IQIIHSMSVYNPSIVTVDKVGNASAVEREI 116

Query: 139 ------------GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
                        D   + ++AASIIAKV RD ++    K Y D+G     GYP  K
Sbjct: 117 ININSSPRVENNADVKYVEVSAASIIAKVVRDNIINELKKTYGDFG----SGYPGDK 169


>gi|15899137|ref|NP_343742.1| ribonuclease HII [Sulfolobus solfataricus P2]
 gi|284173748|ref|ZP_06387717.1| ribonuclease HII [Sulfolobus solfataricus 98/2]
 gi|74539626|sp|Q97W56|RNH2_SULSO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|13815686|gb|AAK42532.1| Ribonuclease HII (rnhB) [Sulfolobus solfataricus P2]
 gi|261600886|gb|ACX90489.1| ribonuclease HII [Sulfolobus solfataricus 98/2]
          Length = 212

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 105/198 (53%), Gaps = 23/198 (11%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA-IIS 82
           GIDE GRGAL GP++VA +++    + F    G+ DSK+++ ++RE+L++ + ++    +
Sbjct: 4   GIDEAGRGALIGPMIVAGVVISDTKLKFLKGIGVKDSKQLTRERREKLFDIVANTVEAFT 63

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE---DLPCQAF 134
           +       ID +N++  T DA+   + +L     +++    + D + + E    L  ++ 
Sbjct: 64  VVKVFPYEIDNYNLNDLTYDAVSKIILSLSSFNPEIVTVDKVGDEKPVIELINKLGYKSN 123

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----TAKHQQVIKE 190
            V K D + +  +AASIIAKV RD  +    + Y D+G     GYP    T K  +   E
Sbjct: 124 VVHKADVLFVEASAASIIAKVIRDNYIDELKQVYGDFG----SGYPADPRTIKWLKSFYE 179

Query: 191 KGPS--CIHRLTFRPLRN 206
           K P+   I R +++ LR+
Sbjct: 180 KNPNPPPIIRRSWKILRS 197


>gi|207108743|ref|ZP_03242905.1| ribonuclease HII [Helicobacter pylori HPKX_438_CA4C1]
          Length = 189

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 11/179 (6%)

Query: 37  LAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS--ISSASHQY 90
           +AG + VA +  D       +  G+ DSKK+S KKR  L +KI +   +   +   S + 
Sbjct: 1   MAGSLFVAGVACDEKTALEFLKMGLKDSKKLSQKKRFFLEDKIKTHGEVKFFVVKKSAEA 60

Query: 91  IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIKGDSISLSIA 147
           ID   +      AI   +EN   +     IDG +   + +  P     +IKGD     IA
Sbjct: 61  IDSLGLGACLRLAIEEILENGCSLANEIKIDGNTAFGLNKRYP-HIQTIIKGDETIAQIA 119

Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
            AS++AK  +DR MR  H  + +YG+D + GY T +H + I + G +  HR +F  L+N
Sbjct: 120 MASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHRHSF-TLKN 177


>gi|258653296|ref|YP_003202452.1| ribonuclease H [Nakamurella multipartita DSM 44233]
 gi|258556521|gb|ACV79463.1| Ribonuclease H [Nakamurella multipartita DSM 44233]
          Length = 244

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 102/225 (45%), Gaps = 31/225 (13%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHK 66
           RPH  +E  +    +  +A +DEVGRGALAGPV V  +++ P    +P G+ DSK ++ +
Sbjct: 6   RPHLRVEKQLMRDGVTRLAAMDEVGRGALAGPVSVGVVVVTPEVRRVPPGLADSKLLTPE 65

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-- 123
            R+ L   +       ++  AS   ID   I  A   A   A+  L     + L+DG   
Sbjct: 66  ARQRLVAPVRRWVQEYAVGHASADEIDAIGIIAALRTAGRRALAELSGPVDAILLDGNHN 125

Query: 124 ---------SIPEDLPCQAFAV-----------------IKGDSISLSIAAASIIAKVTR 157
                    + P+ L    F V                 IK D    ++A AS++AK  R
Sbjct: 126 YLREPAAPAAAPDPLAAPLFEVAAEAVAPADPEPAVHVRIKADMTCAAVAGASVLAKTER 185

Query: 158 DRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           D ++      YP YGF  + GY T +H   ++E GP  +HR ++R
Sbjct: 186 DAILTGLGPDYPAYGFAVNKGYGTPEHLAALREHGPCAVHRRSWR 230


>gi|315230435|ref|YP_004070871.1| ribonuclease HII [Thermococcus barophilus MP]
 gi|315183463|gb|ADT83648.1| ribonuclease HII [Thermococcus barophilus MP]
          Length = 227

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 28/177 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELY----EKITS 77
           + GIDE GRG + GP+V+AA+++D  N+      G+ DSKK++ ++RE+L+    E +  
Sbjct: 6   LGGIDEAGRGPVIGPLVIAAVVIDEKNLSKLEALGVRDSKKLTPRRREKLFNEIIELLDD 65

Query: 78  SAIISISSASHQYIDKH--NIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-------- 127
            AII +S    + ID+    +++  ++     + +L+V P    ID   I E        
Sbjct: 66  YAIIELSP---EQIDEREGTMNEFEIENFVRVLNSLKVKPDVLYIDAADIKEKRFGEIIG 122

Query: 128 ---DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
              +   +  A  K D+  L ++AASI+AKVTRD+ +    K+Y + G     GYP+
Sbjct: 123 KGLNFSPKIIAEHKADAKYLPVSAASILAKVTRDKAIEKLKKQYGEIG----SGYPS 175


>gi|289178076|gb|ADC85322.1| Ribonuclease HII [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 290

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 117/256 (45%), Gaps = 67/256 (26%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKK 62
           P F LE  +       + G DEVGRG+LAGPV+V A      N+       P  + DSK 
Sbjct: 35  PSFALERQIAADGFDVIVGFDEVGRGSLAGPVMVGAAAFLARNLDEAQTAMPQYLADSKT 94

Query: 63  ISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKA-------TLDAIYHAV------ 108
           ++  +RE LYE + +     +I SAS+  ID   I  A        LD +  A+      
Sbjct: 95  LTEHRRESLYEPLQAWVDGFAIGSASNAEIDAWGISHALGIAALRALDGVERALGMGSPG 154

Query: 109 -------------------------ENLQVIPRSALIDGRSIPED--------------- 128
                                    ++   +   A++DG   P D               
Sbjct: 155 DSEIRGFDERCKYSGTWAYTKHSPQQHADGLHVGAILDG---PNDYISKALGTFEAPAVP 211

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM-RIA--HKKYPDYGFDSHVGYPTAKHQ 185
           +P Q   ++K D+   S+AAA+++AKVTRDRLM ++A  H +Y  YG++ + GY +  H+
Sbjct: 212 MPAQVRTLVKADAQCASVAAAAVLAKVTRDRLMEQLARDHAEYARYGWERNKGYGSKAHR 271

Query: 186 QVIKEKGPSCIHRLTF 201
           + I + GPS +HR+++
Sbjct: 272 EAIAQCGPSDLHRVSW 287


>gi|146080572|ref|XP_001464032.1| ribonuclease hii [Leishmania infantum JPCM5]
 gi|134068122|emb|CAM66407.1| putative ribonuclease HII [Leishmania infantum JPCM5]
 gi|322497431|emb|CBZ32505.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 268

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 105/252 (41%), Gaps = 87/252 (34%)

Query: 37  LAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITS----------------- 77
           +AGPV VAA +   +  P  + + DSKK+    R E  E + +                 
Sbjct: 1   MAGPVGVAATLYRISATPVRYAVLDSKKMKEIDRAETLEAMCAELSDAGVEGFVGTTVRD 60

Query: 78  ------------------SAIISISSASHQYIDKHNIHKATLDAI----------YHAVE 109
                             +A++ +S      I++ NI  ATL+ +          Y+AV 
Sbjct: 61  GTCCLVRYQRRKPLQAVAAALVDVS-----VINERNILNATLEGMSAVCDAVVRSYNAVS 115

Query: 110 NLQVI-PRSA--LIDGRSIP---------EDLPCQAF----------------------A 135
            L  + P +   LIDG  +P         + +  QA                        
Sbjct: 116 GLDTLTPLTCAILIDGNRVPWTFLSGEERQRVCVQAVRKVEARKRIGVEYPALDGFGCTT 175

Query: 136 VIKGDSISLSIAAASIIAKVTRDRL-MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
           V+KGD+  LSIAAASI+AKV RD   + + H+ +P YGFD H GY TA H+  +   GPS
Sbjct: 176 VVKGDATLLSIAAASIVAKVARDAYAVSVMHRAFPQYGFDHHKGYCTAAHKAELARWGPS 235

Query: 195 CIHRLTFRPLRN 206
             HRL + P++ 
Sbjct: 236 RFHRLDYAPVKG 247


>gi|32265505|ref|NP_859537.1| ribonuclease HII [Helicobacter hepaticus ATCC 51449]
 gi|32261553|gb|AAP76603.1| ribonuclease HII [Helicobacter hepaticus ATCC 51449]
          Length = 207

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 95/205 (46%), Gaps = 26/205 (12%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSS--- 78
           MW VAGIDE GRG + G + +A II +   I  FG  DSKK+  K+R  +Y  +  S   
Sbjct: 1   MW-VAGIDEAGRGCICGGLFIAGIIANEQVIAQFGAKDSKKMLPKQRVRVYNALLDSQKR 59

Query: 79  AIISISSASHQY--IDKHNIHKATLDAIYHAVENL-----------QVIPRSALIDGRS- 124
             I    A  Q   IDK+ +  A    I   +  L           Q  P   +IDG + 
Sbjct: 60  GEIGFYVAQIQAWDIDKYGLSWAMRSGIEEVLSYLGSYMLEQNILVQNQPLDIVIDGNTT 119

Query: 125 ----IPEDLPCQAF---AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
               IP  L  +      +IKGD +   I+ AS++AKV++D  M +    YP Y    + 
Sbjct: 120 FGAHIPTFLAHKDVHLKTLIKGDELMPIISCASVVAKVSKDSQMYMLDNLYPQYLLAKNK 179

Query: 178 GYPTAKHQQVIKEKGPSCIHRLTFR 202
           GY T +H++ I   G    HR +F+
Sbjct: 180 GYATLEHKKQIMRYGYCPHHRKSFK 204


>gi|157866086|ref|XP_001681749.1| ribonuclease hii [Leishmania major strain Friedlin]
 gi|68125048|emb|CAJ02388.1| putative ribonuclease HII [Leishmania major strain Friedlin]
          Length = 268

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 104/252 (41%), Gaps = 87/252 (34%)

Query: 37  LAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITS----------------- 77
           +AGPV VAA +   +  P  + + DSKK+    R E  E + +                 
Sbjct: 1   MAGPVGVAATLYRISATPVRYAVMDSKKMKESDRAETLEAMCAELSDAGVEGFVGTTVRD 60

Query: 78  ------------------SAIISISSASHQYIDKHNIHKATLDAI----------YHAVE 109
                             +A++ +S      I++ NI  ATL+ +          Y+AV 
Sbjct: 61  GACCLVRYQRRKPLQAVAAALVDVS-----VINERNILNATLEGMSAVCEAVVRSYNAVS 115

Query: 110 NLQVI-PRSA--LIDGRSIP---------EDLPCQAF----------------------A 135
            L  + P +   LIDG  +P         + +  QA                        
Sbjct: 116 GLGTLTPLTCAILIDGNRVPWTFLSGEERQRVCVQAVRKVEARKRIGVEYPALDGFSCTT 175

Query: 136 VIKGDSISLSIAAASIIAKVTRDRL-MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
           V+KGD+  LSIAAASI+AKV RD   + + H  +P YGFD H GY TA H+  +   GPS
Sbjct: 176 VVKGDATLLSIAAASIVAKVARDAYAVSVMHPAFPQYGFDHHKGYCTAAHKAELARWGPS 235

Query: 195 CIHRLTFRPLRN 206
             HRL + P++ 
Sbjct: 236 RFHRLDYAPVKG 247


>gi|183601863|ref|ZP_02963232.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis HN019]
 gi|219682777|ref|YP_002469160.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190353|ref|YP_002967747.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241195759|ref|YP_002969314.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218748|gb|EDT89390.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620427|gb|ACL28584.1| ribonuclease [Bifidobacterium animalis subsp. lactis AD011]
 gi|240248745|gb|ACS45685.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250313|gb|ACS47252.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295793340|gb|ADG32875.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis V9]
          Length = 258

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 117/256 (45%), Gaps = 67/256 (26%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKK 62
           P F LE  +       + G DEVGRG+LAGPV+V A      N+       P  + DSK 
Sbjct: 3   PSFALERQIAADGFDVIVGFDEVGRGSLAGPVMVGAAAFLARNLDEAQTAMPQYLADSKT 62

Query: 63  ISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKA-------TLDAIYHAV------ 108
           ++  +RE LYE + +     +I SAS+  ID   I  A        LD +  A+      
Sbjct: 63  LTEHRRESLYEPLQAWVDGFAIGSASNAEIDAWGISHALGIAALRALDGVERALGMGSPG 122

Query: 109 -------------------------ENLQVIPRSALIDGRSIPED--------------- 128
                                    ++   +   A++DG   P D               
Sbjct: 123 DSEIRGFDERCKYSGTWAYTKHSPQQHADGLHVGAILDG---PNDYISKALGTFEAPAVP 179

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM-RIA--HKKYPDYGFDSHVGYPTAKHQ 185
           +P Q   ++K D+   S+AAA+++AKVTRDRLM ++A  H +Y  YG++ + GY +  H+
Sbjct: 180 MPAQVRTLVKADAQCASVAAAAVLAKVTRDRLMEQLARDHAEYARYGWERNKGYGSKAHR 239

Query: 186 QVIKEKGPSCIHRLTF 201
           + I + GPS +HR+++
Sbjct: 240 EAIAQCGPSDLHRVSW 255


>gi|322489445|emb|CBZ24703.1| putative ribonuclease HII [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 268

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 106/252 (42%), Gaps = 87/252 (34%)

Query: 37  LAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITS----------------- 77
           +AGPV VAA +   +  P  + + DSK++    R E  E + +                 
Sbjct: 1   MAGPVGVAATLYRISATPVRYAVVDSKQMKENARAETLEAMCAELSDSGVEGFMGTTARD 60

Query: 78  ------------------SAIISISSASHQYIDKHNIHKATLDAI----------YHAVE 109
                             +A++ +S      I++ NI  ATL+ +          Y+A+ 
Sbjct: 61  GACCLVRYQRRKPLQAVAAALVDVS-----VINERNILNATLEGMSAVCDAIVRSYNAMS 115

Query: 110 NLQVI-PRSA--LIDGRSIP---------EDLPCQAF----------------------A 135
            L ++ P +   LIDG  +P         + +  QA                        
Sbjct: 116 GLSILTPLTCAILIDGNRVPWTFLSGEERQRVRVQAVRKVEARKRIGIEYPALDGFGCTT 175

Query: 136 VIKGDSISLSIAAASIIAKVTRDRL-MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
           V+KGD+  LSIAAASI+AKV RD   + + H+ +P YGFD H GY TA H+  +   GPS
Sbjct: 176 VVKGDATLLSIAAASIVAKVARDAYAVSVMHRAFPQYGFDHHKGYCTAAHKAELARWGPS 235

Query: 195 CIHRLTFRPLRN 206
             HRL + P++ 
Sbjct: 236 PFHRLDYAPVKG 247


>gi|15920736|ref|NP_376405.1| ribonuclease HII [Sulfolobus tokodaii str. 7]
 gi|74574695|sp|Q974Z3|RNH2_SULTO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|15621519|dbj|BAB65514.1| 208aa long hypothetical ribonuclease HII [Sulfolobus tokodaii str.
           7]
          Length = 208

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 21/171 (12%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS-SAI 80
           V GIDE GRG+L GP++VA + +  + + F    G+ DSK+++  +RE+L++ I S S  
Sbjct: 3   VVGIDEAGRGSLIGPMIVAGVAIKNDRLKFLKNIGVKDSKQLTRNRREKLFDIICSYSEG 62

Query: 81  ISISSASHQYIDKHNI----HKATLDAIYHAVE------NLQVIPRSALIDGRSIPEDLP 130
            +I   S + ID  N+    +KA +  IY  VE      ++  +  + +++   I   L 
Sbjct: 63  FTIVKVSPEEIDSENLNELTYKAMIKIIYSLVEFKPIRISIDKVGNTKVVEQEII--KLG 120

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
            +   V   D   +  +AASIIAKV RD ++     KY D+G     GYP+
Sbjct: 121 MEPNIVTNADVYFVEASAASIIAKVIRDNIIDTLKSKYGDFG----SGYPS 167


>gi|269219635|ref|ZP_06163489.1| ribonuclease HII [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210877|gb|EEZ77217.1| ribonuclease HII [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 227

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/190 (34%), Positives = 97/190 (51%), Gaps = 14/190 (7%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREELYEKITSSAI-IS 82
           +AG+DEVGRG+LAGPV V   ++D +  + P G+ DSK +S   RE +   +   A+ ++
Sbjct: 28  IAGVDEVGRGSLAGPVSVGIALIDASTGDFPEGLRDSKAMSPAARERMAPLVREWAVDVA 87

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR--SIPED--------LPCQ 132
           +  A    ID   I  A   A   A+  L   P + L+DG+     ED        LP  
Sbjct: 88  VGHAGPDVIDDVGIVAALRHAAKEALNGLSATPSAVLLDGKHNWWAEDSLFDVDPLLPQI 147

Query: 133 AFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              + +KGD+    IAAAS+ AKV RD LM +    +P Y +  + GY +  H + +   
Sbjct: 148 PVRMEVKGDARCAVIAAASVAAKVERDGLMVVLDGCFPGYDWARNKGYASPSHIEGLARL 207

Query: 192 GPSCIHRLTF 201
           GPS  HR ++
Sbjct: 208 GPSDHHRKSW 217


>gi|317010006|gb|ADU80586.1| ribonuclease HII [Helicobacter pylori India7]
          Length = 204

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 94/188 (50%), Gaps = 11/188 (5%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS- 82
           GIDE GRG LAG + VA ++         +  G+ DSKK+S KKR  L +KI +   +  
Sbjct: 4   GIDEAGRGCLAGSLFVAGVVCSEKTALEFLKMGLKDSKKLSKKKRFFLEDKIKTHGEMGF 63

Query: 83  -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138
            +   S   ID   +      AI   +EN   +     IDG +   + E  P     +IK
Sbjct: 64  FVVKKSANEIDSLGLGACLKLAIQEILENACSLANEIKIDGNTAFGLNERYP-NIQTIIK 122

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD     IA AS++AK  +DR MR  H  + +YG+D + GY T +H + I + G +  HR
Sbjct: 123 GDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAIIKLGVTPFHR 182

Query: 199 LTFRPLRN 206
            +F  L+N
Sbjct: 183 HSF-TLKN 189


>gi|205355751|ref|ZP_03222521.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346528|gb|EDZ33161.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 159

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 5/150 (3%)

Query: 56  GINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP 115
           G+ DSKK+S KKREELYE I  ++   I + S + ID   +       +    ++ +   
Sbjct: 14  GLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFKT-E 72

Query: 116 RSALIDGRSIPEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174
            + L DG +   +L        IK D+  L ++AASI+AKV++DR+M    K +P Y F+
Sbjct: 73  NNFLYDGNT---NLGINGIKTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPCYEFE 129

Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            +  Y T  H++ I + G   +HR +F+ L
Sbjct: 130 KNKAYGTKAHKEFIAKFGICKLHRKSFKLL 159


>gi|322379000|ref|ZP_08053403.1| ribonuclease HII [Helicobacter suis HS1]
 gi|322380765|ref|ZP_08054871.1| ribonuclease HII [Helicobacter suis HS5]
 gi|321146769|gb|EFX41563.1| ribonuclease HII [Helicobacter suis HS5]
 gi|321148492|gb|EFX42989.1| ribonuclease HII [Helicobacter suis HS1]
          Length = 194

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 89/186 (47%), Gaps = 10/186 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS-SAI 80
           + GIDE GRG L G + VA +        F    G+ +SK++  +KR E  ++I     +
Sbjct: 2   ILGIDEAGRGCLCGSLFVAGVGCTAEIAAFFNKQGLKESKQLKREKRFEFAKQIQEHREV 61

Query: 81  ISISSA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI--PEDLPCQAF-AV 136
           +S+  A S   ID   +     +AI   V     I    L DG ++        + F A+
Sbjct: 62  LSLVVAKSALEIDTKGLSVCVQEAITQIVLRFPHILHVKL-DGNTLFHLHFSHLRYFEAI 120

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           IKGD     IA ASI+AK  +D+ M    K YP YGF  H GY T +H++ I   G    
Sbjct: 121 IKGDCQITQIAMASILAKAAKDKEMLALDKAYPAYGFVRHCGYGTQEHRKAITHLGYLKE 180

Query: 197 HRLTFR 202
           HR +F+
Sbjct: 181 HRKSFK 186


>gi|229818328|ref|ZP_04448609.1| hypothetical protein BIFANG_03630 [Bifidobacterium angulatum DSM
           20098]
 gi|229784198|gb|EEP20312.1| hypothetical protein BIFANG_03630 [Bifidobacterium angulatum DSM
           20098]
          Length = 239

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 119/237 (50%), Gaps = 47/237 (19%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-------IPFGINDSKK 62
           P  +LE  + ++    + G DEVGRG+LAGPV+V A  +   +       +P G+ DSK 
Sbjct: 4   PTLDLEHTLADRQYDVIVGFDEVGRGSLAGPVMVGACAIRAQDVRDGAKEVPQGVADSKM 63

Query: 63  ISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ--------- 112
           ++  +RE + +++   SA  ++ +AS+  ID+  I  A   A   A+  ++         
Sbjct: 64  LTEHRREAIVDELKDWSAAWAVGAASNTEIDEWGISYALGVAALRALAEVERTLGIGDDG 123

Query: 113 ------VIPRS---ALIDGRSIPEDLPCQAFAV---------------IKGDSISLSIAA 148
                 V  R+   A++DG   P D   +A                  +KGD    ++AA
Sbjct: 124 TAVIGGVKTRASVGAILDG---PNDYITKALNTFEAPVVPVPADVVTKVKGDQHCATVAA 180

Query: 149 ASIIAKVTRDRLM-RIAHK--KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           A++IAKVTRDRLM  IAH   +Y  Y ++ + GY +  H+  I + GP+ +HR++++
Sbjct: 181 AAVIAKVTRDRLMVSIAHSDPQYAPYEWEHNKGYGSKAHRAAIAQYGPTALHRISWK 237


>gi|77386118|gb|ABA77535.1| ribonuclease HII [Campylobacter jejuni]
          Length = 159

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 5/150 (3%)

Query: 56  GINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP 115
           G+ DSKK+S KKREELYE I  ++   I + S + ID   +       +    ++ +   
Sbjct: 14  GLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQIDALGLSTCLKTGLKLIKKHFKT-E 72

Query: 116 RSALIDGRSIPEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174
            + L DG +   +L        IK D+  L ++AASI+AKV++DR+M    K +P Y F+
Sbjct: 73  NNFLYDGNT---NLGINGIKTQIKADASILQVSAASILAKVSKDRVMNFLAKDFPCYEFE 129

Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            +  Y T  H+++I + G   +HR +F+ L
Sbjct: 130 KNKAYGTKAHKELIAKFGICKLHRKSFKLL 159


>gi|11498229|ref|NP_069455.1| ribonuclease HII (rnhB) [Archaeoglobus fulgidus DSM 4304]
 gi|7388077|sp|O29634|RNH2_ARCFU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|2650000|gb|AAB90620.1| ribonuclease HII (rnhB) [Archaeoglobus fulgidus DSM 4304]
          Length = 205

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 104/201 (51%), Gaps = 26/201 (12%)

Query: 27  AGIDEVGRGALAGPVVVAAIIL-DPNNI-PFGINDSKKISHKKREELYEKITSSAIISIS 84
           AGIDE G+G + GP+VVA +   D + +   G+ DSKK+S  +REEL E+I       + 
Sbjct: 3   AGIDEAGKGCVIGPLVVAGVACSDEDRLRKLGVKDSKKLSQGRREELAEEIRKICRTEVL 62

Query: 85  SASHQYIDKHNIHKATLDAIY---HAVENLQVIPRSALIDG---------RSIPEDLPCQ 132
             S + +D+    K T++ I    +A   L++ P  A +D          R + E    +
Sbjct: 63  KVSPENLDERMAAK-TINEILKECYAEIILRLKPEIAYVDSPDVIPERLSRELEEITGLR 121

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA-KHQQVIKE- 190
             A  K D     +AAASIIAKV R+R +    +K+ D+G     GY +  + ++V+KE 
Sbjct: 122 VVAEHKADEKYPLVAAASIIAKVEREREIERLKEKFGDFGS----GYASDPRTREVLKEW 177

Query: 191 ----KGPSCIHRLTFRPLRNL 207
               + PSC+ R+ ++ + NL
Sbjct: 178 IASGRIPSCV-RMRWKTVSNL 197


>gi|14278646|pdb|1I39|A Chain A, Rnase Hii From Archaeoglobus Fulgidus
 gi|14278647|pdb|1I3A|A Chain A, Rnase Hii From Archaeoglobus Fulgidus With Cobalt
           Hexammine Chloride
          Length = 225

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 100/200 (50%), Gaps = 24/200 (12%)

Query: 27  AGIDEVGRGALAGPVVVAAIIL-DPNNI-PFGINDSKKISHKKREELYEKITSSAIISIS 84
           AGIDE G+G + GP+VVA +   D + +   G+ DSKK+S  +REEL E+I       + 
Sbjct: 23  AGIDEAGKGCVIGPLVVAGVACSDEDRLRKLGVKDSKKLSQGRREELAEEIRKICRTEVL 82

Query: 85  SASHQYIDKHNIHKATLDAIYHAVEN--LQVIPRSALIDG---------RSIPEDLPCQA 133
             S + +D+    K   + +        L++ P  A +D          R + E    + 
Sbjct: 83  KVSPENLDERMAAKTINEILKECYAEIILRLKPEIAYVDSPDVIPERLSRELEEITGLRV 142

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKE-- 190
            A  K D     +AAASIIAKV R+R +    +K+ D+G     GY +  + ++V+KE  
Sbjct: 143 VAEHKADEKYPLVAAASIIAKVEREREIERLKEKFGDFGS----GYASDPRTREVLKEWI 198

Query: 191 ---KGPSCIHRLTFRPLRNL 207
              + PSC+ R+ ++ + NL
Sbjct: 199 ASGRIPSCV-RMRWKTVSNL 217


>gi|1694784|emb|CAA60867.1| rnhB [Haemophilus influenzae]
          Length = 97

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 59/87 (67%), Gaps = 1/87 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84
           +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L E+I   A+  ++ 
Sbjct: 11  IAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKALAWALG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENL 111
            A    ID+ NI +A+L A+  AV++L
Sbjct: 71  RAEADEIDEINILQASLLAMTRAVKSL 97


>gi|321159924|pdb|3P83|D Chain D, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
           Fulgidus.
 gi|321159925|pdb|3P83|E Chain E, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
           Fulgidus.
 gi|321159926|pdb|3P83|F Chain F, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
           Fulgidus
          Length = 217

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 100/200 (50%), Gaps = 24/200 (12%)

Query: 27  AGIDEVGRGALAGPVVVAAIIL-DPNNI-PFGINDSKKISHKKREELYEKITSSAIISIS 84
           AGIDE G+G + GP+VVA +   D + +   G+ DSKK+S  +REEL E+I       + 
Sbjct: 15  AGIDEAGKGCVIGPLVVAGVACSDEDRLRKLGVKDSKKLSQGRREELAEEIRKICRTEVL 74

Query: 85  SASHQYIDKHNIHKATLDAIYHAVEN--LQVIPRSALIDG---------RSIPEDLPCQA 133
             S + +D+    K   + +        L++ P  A +D          R + E    + 
Sbjct: 75  KVSPENLDERMAAKTINEILKECYAEIILRLKPEIAYVDSPDVIPERLSRELEEITGLRV 134

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKE-- 190
            A  K D     +AAASIIAKV R+R +    +K+ D+G     GY +  + ++V+KE  
Sbjct: 135 VAEHKADEKYPLVAAASIIAKVEREREIERLKEKFGDFG----SGYASDPRTREVLKEWI 190

Query: 191 ---KGPSCIHRLTFRPLRNL 207
              + PSC+ R+ ++ + NL
Sbjct: 191 ASGRIPSCV-RMRWKTVSNL 209


>gi|42601730|gb|AAS21614.1| ribonuclease HII [Leishmania panamensis]
          Length = 267

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/102 (41%), Positives = 55/102 (53%), Gaps = 9/102 (8%)

Query: 113 VIPRSALIDGRSIPE---------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163
           + P   LIDG ++P           +      +I+GD  SLSIAAAS +AKVTRD LM  
Sbjct: 156 IQPPLVLIDGHAVPGPSYDYFTSVSIGGDVQPIIEGDKRSLSIAAASCLAKVTRDELMNY 215

Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
               YP YGF  + GYP  +H + + + G   IHR T+RP R
Sbjct: 216 IGALYPGYGFGENKGYPVEQHMKYVAKNGLCPIHRKTYRPCR 257


>gi|229821017|ref|YP_002882543.1| Ribonuclease H [Beutenbergia cavernae DSM 12333]
 gi|229566930|gb|ACQ80781.1| Ribonuclease H [Beutenbergia cavernae DSM 12333]
          Length = 273

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 105/201 (52%), Gaps = 24/201 (11%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITS-SAIIS 82
           VAG+DEVGRG LAGPV V  +++       P G+ DSK ++   RE L   +   +   +
Sbjct: 35  VAGMDEVGRGCLAGPVSVGVVVVGPATGRTPAGLRDSKLLTPAARERLVPPVRRWAFASA 94

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR----SIPE-DL----- 129
           ++ AS   ID+  I  A   A + A+ +L    V+P + ++DG     + P+ DL     
Sbjct: 95  VAHASAAEIDEIGIIAALRLAGHRALGSLAADGVVPGALILDGSHDWLTPPQPDLFEALE 154

Query: 130 -PCQAFAVI-------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
            P    A +       K D     +AAAS++AK  RD LMR+ H  +PD+ + S+ GY  
Sbjct: 155 PPVAPTAFVPPVRMRVKADLTCSVVAAASVLAKCERDGLMRVLHDDHPDFDWASNKGYAA 214

Query: 182 AKHQQVIKEKGPSCIHRLTFR 202
            +H   ++E GP+ +HR ++R
Sbjct: 215 PEHLAALRELGPTVLHRRSWR 235


>gi|154345460|ref|XP_001568667.1| ribonuclease HII [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134066009|emb|CAM43794.1| putative ribonuclease HII [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 474

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 65/127 (51%), Gaps = 13/127 (10%)

Query: 88  HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE---------DLPCQAFAVIK 138
           +Q   K ++ K   D  Y   E +Q  P   LIDG ++P           +      +I+
Sbjct: 342 YQVPHKLDLLKGATD--YFDFEPIQ--PPLVLIDGHAVPGPSYDYFTSVSIGGDVQPIIE 397

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD  SLSIAAAS +AKVTRD LM      YP YGF  + GYP  +H + + + G   IHR
Sbjct: 398 GDKRSLSIAAASCLAKVTRDELMNYIGALYPGYGFGENKGYPVEQHMKYVAKNGLCPIHR 457

Query: 199 LTFRPLR 205
            T+RP R
Sbjct: 458 KTYRPCR 464



 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 13/63 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILDP----NN---------IPFGINDSKKISHKKREELYEK 74
           G DE GRG LAGPVV AA+   P    NN           F I DSK +S ++R+ ++  
Sbjct: 137 GCDEAGRGPLAGPVVGAAVSRIPVSSFNNEFDQLYEAPEQFQIFDSKSVSERQRDLVFAM 196

Query: 75  ITS 77
           IT 
Sbjct: 197 ITG 199


>gi|323359714|ref|YP_004226110.1| ribonuclease HII [Microbacterium testaceum StLB037]
 gi|323276085|dbj|BAJ76230.1| ribonuclease HII [Microbacterium testaceum StLB037]
          Length = 217

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 102/192 (53%), Gaps = 18/192 (9%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81
           V   DEVGRGALAGPV V A ++DP+     +P G+ DSK +   +R E+  +  ++A +
Sbjct: 19  VIACDEVGRGALAGPVAVGAAVIDPSRSRKRVPTGLRDSKLVPEARRPEVAAR--AAAFV 76

Query: 82  ---SISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALI--DGR----SIPEDL 129
              ++  AS + ID+  I +A   A   A+ +L+   V+P  AL+  DG     +   + 
Sbjct: 77  QHSAVGWASSEEIDEIGIIRALGLAAVRAIADLRAHGVVPEDALVILDGNHDYITPAGES 136

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             +   ++K D    S AAAS+IAKV RD +M   H   P YG+  + GY +  H++ I 
Sbjct: 137 GLRVQPIVKADRDCASAAAASVIAKVARDTVMTYLHDDLPAYGWARNKGYASLDHREAIS 196

Query: 190 EKGPSCIHRLTF 201
             G S  HR ++
Sbjct: 197 AHGMSVHHRHSW 208


>gi|18042143|gb|AAL57850.1|AF454825_1 ribonuclease HII [Leishmania donovani]
          Length = 474

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 60/114 (52%), Gaps = 15/114 (13%)

Query: 105 YHAVENLQVIPRSALIDGRSIPEDLPCQAF-----------AVIKGDSISLSIAAASIIA 153
           Y   E +Q  P   LIDG ++P   P   +            +I+GD  SLSIAAAS +A
Sbjct: 357 YFDFEPIQ--PPLVLIDGHAVPG--PSYDYFTSVRIGGDVQPIIEGDKRSLSIAAASCLA 412

Query: 154 KVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           KVTRD LM      YP YGF  + GYP  +H + + + G   IHR T+RP R +
Sbjct: 413 KVTRDELMNYIDALYPGYGFRENKGYPVEQHMKYVTKNGLCPIHRKTYRPCRTV 466



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 13/63 (20%)

Query: 28  GIDEVGRGALAGPVVVAAI----ILDPNN---------IPFGINDSKKISHKKREELYEK 74
           G DE GRG LAGPVV AA+    +   NN           F I DSK +S ++R+ ++  
Sbjct: 137 GCDEAGRGPLAGPVVGAAVSRIPVFSFNNEFDQLYEAPEQFQIFDSKSVSERQRDLVFAM 196

Query: 75  ITS 77
           IT 
Sbjct: 197 ITG 199


>gi|322490611|emb|CBZ25873.1| putative ribonuclease HII [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 474

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 59/112 (52%), Gaps = 11/112 (9%)

Query: 105 YHAVENLQVIPRSALIDGRSIPE---------DLPCQAFAVIKGDSISLSIAAASIIAKV 155
           Y   E +Q  P   LIDG ++P           +      +I+GD  SLSIAAAS +AKV
Sbjct: 357 YFDFEPIQ--PPLVLIDGHAVPGPSYDYFTSVRIGGDVQPIIEGDKRSLSIAAASCLAKV 414

Query: 156 TRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           TRD LM      YP YGF  + GYP  +H + + + G   IHR T+RP R +
Sbjct: 415 TRDELMNYIDALYPGYGFRENKGYPVEQHMKYVAKNGLCPIHRKTYRPCRTV 466



 Score = 39.7 bits (91), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 13/63 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILDP----NN---------IPFGINDSKKISHKKREELYEK 74
           G DE GRG LAGPVV AA+   P    NN           F I DSK +S ++R+ ++  
Sbjct: 137 GCDEAGRGPLAGPVVGAAVSRIPVSSFNNEFDQLYEAPEQFQIFDSKSVSERQRDLVFAM 196

Query: 75  ITS 77
           IT 
Sbjct: 197 ITG 199


>gi|146103491|ref|XP_001469573.1| ribonuclease HII [Leishmania infantum]
 gi|134073943|emb|CAM72682.1| putative ribonuclease HII [Leishmania infantum JPCM5]
 gi|322503389|emb|CBZ38474.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 474

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 59/112 (52%), Gaps = 11/112 (9%)

Query: 105 YHAVENLQVIPRSALIDGRSIPE---------DLPCQAFAVIKGDSISLSIAAASIIAKV 155
           Y   E +Q  P   LIDG ++P           +      +I+GD  SLSIAAAS +AKV
Sbjct: 357 YFDFEPIQ--PPLVLIDGHAVPGPSYDYFTSVRIGGDVQPIIEGDKRSLSIAAASCLAKV 414

Query: 156 TRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           TRD LM      YP YGF  + GYP  +H + + + G   IHR T+RP R +
Sbjct: 415 TRDELMNYIDALYPGYGFRENKGYPVEQHMKYVAKNGLCPIHRKTYRPCRTV 466



 Score = 39.7 bits (91), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 13/63 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILDP----NN---------IPFGINDSKKISHKKREELYEK 74
           G DE GRG LAGPVV AA+   P    NN           F I DSK +S ++R+ ++  
Sbjct: 137 GCDEAGRGPLAGPVVGAAVSRIPVSSFNNEFDQLYEAPEQFQIFDSKSVSERQRDLVFAM 196

Query: 75  ITS 77
           IT 
Sbjct: 197 ITG 199


>gi|41614859|ref|NP_963357.1| hypothetical protein NEQ063 [Nanoarchaeum equitans Kin4-M]
 gi|74579762|sp|Q74MH3|RNH2_NANEQ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|40068583|gb|AAR38918.1| NEQ063 [Nanoarchaeum equitans Kin4-M]
          Length = 200

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 87/171 (50%), Gaps = 15/171 (8%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSSAIISISS 85
            G+DE GRG + GP+V+A +I D   +   G+ DSK ++ ++REEL+ +I  ++++    
Sbjct: 4   GGVDEAGRGPIIGPMVIALVIGDSGYLKELGVKDSKLLTKEQREELFNEIVKNSLVKYEI 63

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI-------- 137
            S   ID++N+++       + + +++      +ID    PE+   +    +        
Sbjct: 64  VSPSLIDRYNLNELEAKVTANLINSIEDEISHIVIDSPERPENYKLRILKYLKKRVKIIT 123

Query: 138 --KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             KG+   L +AAASI+AKV RDR +    K     G D   GYP+ K  +
Sbjct: 124 KNKGEEDPL-VAAASIVAKVIRDREI---EKIKEQTGIDFGSGYPSDKRTR 170


>gi|224006103|ref|XP_002292012.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972531|gb|EED90863.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 341

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 118/255 (46%), Gaps = 63/255 (24%)

Query: 14  LEAMVREKNMWPVAGIDEVG-RGALAGPVVVAAI-ILDPNN--IPFGI------------ 57
           LE  +  +    V G D+ G  G +AGPVVVA+  +L P +  +P  +            
Sbjct: 85  LETDLHSRGYQFVIGSDDSGGAGCIAGPVVVASCCLLQPFSAVLPLDVSTKQSTAADKLL 144

Query: 58  -----------NDSKKISHKKREELYEKITSSA---IISISSASHQYIDKHNIHKATLDA 103
                      NDSK ++ ++R ++Y  I +      +S++  S Q ID  N+ +AT  A
Sbjct: 145 SQSEMEIMAIVNDSKTLTPQQRIDVYNVICAHPDVFAVSVAQRSPQEIDDINLTRATQLA 204

Query: 104 IYHAVE------NLQVIPRSALIDGRSIPEDLPCQA-----------------------F 134
              ++E      NL      A++DG+  P+    Q+                       F
Sbjct: 205 FAESIESLVENYNLPFDKIYAIVDGKVSPKLYALQSSDTESSMQQQQSTQQSQQAAPKRF 264

Query: 135 AV---IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +V     GD+   ++A +SI+A+V+RD ++   H +YP YGFD ++GY + +H + +   
Sbjct: 265 SVRPYTNGDANVFTVALSSIVARVSRDAIIAELHDQYPSYGFDENLGYGSREHVEAVHRL 324

Query: 192 GP-SCIHRLTFRPLR 205
           G  + +HRL+F+ ++
Sbjct: 325 GALTGVHRLSFKQVK 339


>gi|157876514|ref|XP_001686603.1| ribonuclease HII [Leishmania major strain Friedlin]
 gi|16930798|gb|AAL32059.1|AF441859_1 ribonuclease HIIC [Leishmania major]
 gi|68129678|emb|CAJ08984.1| putative ribonuclease HII [Leishmania major strain Friedlin]
          Length = 474

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 59/112 (52%), Gaps = 11/112 (9%)

Query: 105 YHAVENLQVIPRSALIDGRSIPE---------DLPCQAFAVIKGDSISLSIAAASIIAKV 155
           Y   E +Q  P   LIDG ++P           +      +I+GD  SLSIAAAS +AKV
Sbjct: 357 YFDFEPIQ--PPLVLIDGHAVPGPSYDYFTSVRIGGDVQPIIEGDKRSLSIAAASCLAKV 414

Query: 156 TRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           TRD LM      YP YGF  + GYP  +H + + + G   IHR T+RP R +
Sbjct: 415 TRDELMNYIDALYPGYGFRDNKGYPVEQHMKYVAKNGLCPIHRKTYRPCRTV 466



 Score = 39.7 bits (91), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 13/63 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILDP----NN---------IPFGINDSKKISHKKREELYEK 74
           G DE GRG LAGPVV AA+   P    NN           F I DSK +S ++R+ ++  
Sbjct: 137 GCDEAGRGPLAGPVVGAAVSRIPVSSFNNEFDQLYEAPEQFQIFDSKSVSERQRDLVFAM 196

Query: 75  ITS 77
           IT 
Sbjct: 197 ITG 199


>gi|219851606|ref|YP_002466038.1| ribonuclease HII [Methanosphaerula palustris E1-9c]
 gi|219545865|gb|ACL16315.1| ribonuclease HII [Methanosphaerula palustris E1-9c]
          Length = 219

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 23/177 (12%)

Query: 26  VAGIDEVGRGALAGPVVVAAII-LDPNNIP-FGINDSKKISHKKREELYEKITSSAIISI 83
           + G+DE G+GA+ GP+VVA +   D + +   G+ DSK+++  KRE+LY++I S    ++
Sbjct: 6   ICGVDEAGKGAVLGPMVVAGVASRDVSAVAALGVRDSKQLTRLKREDLYDQIRSICTTTV 65

Query: 84  SSASHQYIDKHNIHKATLDAIY---HAVENLQVIPRSALIDGRSIPED------------ 128
           +  S   ID      AT++ I    HA     + P  A +D   +  D            
Sbjct: 66  TVLSAADIDLAR-ESATMNMIVARGHAAVISTLTPTLAYVDACDVNADRYRETVTALLEP 124

Query: 129 -LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
              CQ  A  + DS    +AAASIIAKVTRDRL+     +    G     GYP+ ++
Sbjct: 125 AASCQVIAEHRADSTYPIVAAASIIAKVTRDRLVDALADECGQIGS----GYPSDRY 177


>gi|210135480|ref|YP_002301919.1| ribonuclease HII [Helicobacter pylori P12]
 gi|238056778|sp|B6JNG1|RNH2_HELP2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|210133448|gb|ACJ08439.1| ribonuclease hII [Helicobacter pylori P12]
          Length = 204

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 95/190 (50%), Gaps = 11/190 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG LAG + VA +  +       +  G+ DSKK+S KKR  L +KI +   +
Sbjct: 2   ILGIDEAGRGCLAGSLFVAGVACNDQTALELLKMGLKDSKKLSLKKRFFLEDKIKTHGKV 61

Query: 82  S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136
              +   S   ID   +      AI   +EN + +     IDG +   + +  P     +
Sbjct: 62  KFFVVKKSANEIDNLGLGACLKLAIQEILENNRSLANEIKIDGNTAFGLNKRYP-NIQTI 120

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           IKGD     IA AS++AK  +DR M   H  + +YG+D + GY T +H + I + G +  
Sbjct: 121 IKGDETIAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAITKLGATPF 180

Query: 197 HRLTFRPLRN 206
           HR +F  L+N
Sbjct: 181 HRHSF-TLKN 189


>gi|269795662|ref|YP_003315117.1| ribonuclease HII [Sanguibacter keddieii DSM 10542]
 gi|269097847|gb|ACZ22283.1| ribonuclease HII [Sanguibacter keddieii DSM 10542]
          Length = 246

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 104/221 (47%), Gaps = 33/221 (14%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69
            E+E  +       +AG+DEVGRGALAGPV V   ++D +    P G+ DSK ++ + R 
Sbjct: 14  LEVETGMLAAGARRLAGMDEVGRGALAGPVSVGVCVVDLSTGPCPVGLTDSKVLTARART 73

Query: 70  ELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA------LIDG 122
           E    I   S   ++ SAS   ID   I +A   A   A   L  + R+A      L+DG
Sbjct: 74  EYLPLIDDWSVATAVGSASAAEIDAVGIVRALRLAGQRA---LVAVARTAGPVDTVLLDG 130

Query: 123 R----SIPED-----------------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM 161
                + PE                  L  +    +K D    S+AAAS++AK  RD  M
Sbjct: 131 SHDWLTEPEPDLLTMLEGEEVAAPDGYLAPRVQTRVKADLSCASVAAASVVAKCERDASM 190

Query: 162 RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
               K +P YG+  + GY +A+H   + E GPS  HR+++R
Sbjct: 191 VQLAKDHPHYGWIGNKGYGSAQHVAALGEHGPSPFHRVSWR 231


>gi|213029433|ref|ZP_03343880.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 92

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 53/80 (66%), Gaps = 1/80 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  LY++I   A+  S+ 
Sbjct: 12  VAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLSLYDEIKEKALSWSLG 71

Query: 85  SASHQYIDKHNIHKATLDAI 104
            A    ID+ NI  AT+ A+
Sbjct: 72  RAEAHEIDELNILHATMLAM 91


>gi|239944789|ref|ZP_04696726.1| ribonuclease HII [Streptomyces roseosporus NRRL 15998]
 gi|239991253|ref|ZP_04711917.1| ribonuclease HII [Streptomyces roseosporus NRRL 11379]
          Length = 197

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 93/170 (54%), Gaps = 6/170 (3%)

Query: 43  VAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS--ISSASHQYIDKHNIHKAT 100
           + A I      P G+ DSK ++ ++R EL E +  S + +  +  AS Q ID   +  A 
Sbjct: 1   MCAAITGLRRPPEGLTDSKLLTPRRRAEL-EPVLRSWVTACALGDASPQEIDDLGMTAAL 59

Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160
             A   A+E L V P + ++DG+      P +   VIKGD   +++AAAS+IAKV RDR+
Sbjct: 60  RLAAVRALEGLPVRPDAVILDGKHDYLGAPWKVRTVIKGDQSCIAVAAASVIAKVHRDRM 119

Query: 161 MR---IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           M     A +    + FD++ GYP+  H+  ++E+GP+  HRL++  L  L
Sbjct: 120 MAELGAASEDCGGFAFDANAGYPSPVHRAALEERGPTVHHRLSWSYLDAL 169


>gi|134104118|pdb|2DFH|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-212)-C
          Length = 221

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 89/182 (48%), Gaps = 38/182 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---- 77
           +AGIDE GRG + GP+V+AA+++D N++P      + DSKK++ K+RE+L+ +I      
Sbjct: 3   IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62

Query: 78  -------SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID--------- 121
                    +I     +    +  N  K        A+ +L+V P     D         
Sbjct: 63  YVILELPPDVIGSREGTLNEFEVENFAK--------ALNSLKVKPDVIYADAADVDEERF 114

Query: 122 GRSIPEDLPCQAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
            R + E L  +A  V   K D I   ++AASI+AKVTRDR +    ++Y + G     GY
Sbjct: 115 ARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGY 170

Query: 180 PT 181
           P+
Sbjct: 171 PS 172


>gi|57640740|ref|YP_183218.1| ribonuclease HII [Thermococcus kodakarensis KOD1]
 gi|7227922|sp|O74035|RNH2_PYRKO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|3551209|dbj|BAA32803.1| ribonuclease HII [Thermococcus kodakaraensis]
 gi|57159064|dbj|BAD84994.1| ribonuclease HII [Thermococcus kodakarensis KOD1]
          Length = 228

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 89/182 (48%), Gaps = 38/182 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---- 77
           +AGIDE GRG + GP+V+AA+++D N++P      + DSKK++ K+RE+L+ +I      
Sbjct: 3   IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62

Query: 78  -------SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID--------- 121
                    +I     +    +  N  K        A+ +L+V P     D         
Sbjct: 63  YVILELPPDVIGSREGTLNEFEVENFAK--------ALNSLKVKPDVIYADAADVDEERF 114

Query: 122 GRSIPEDLPCQAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
            R + E L  +A  V   K D I   ++AASI+AKVTRDR +    ++Y + G     GY
Sbjct: 115 ARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGY 170

Query: 180 PT 181
           P+
Sbjct: 171 PS 172


>gi|134104117|pdb|2DFF|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-204)-C
          Length = 213

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 38/182 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---- 77
           +AGIDE GRG + GP+V+AA+++D N++P      + DSKK++ K+RE+L+ +I      
Sbjct: 3   IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62

Query: 78  -------SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED-- 128
                    +I     +    +  N  K        A+ +L+V P     D   + E+  
Sbjct: 63  YVILELPPDVIGSREGTLNEFEVENFAK--------ALNSLKVKPDVIYADAADVDEERF 114

Query: 129 ---------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
                       +  A  K D I   ++AASI+AKVTRDR +    ++Y + G     GY
Sbjct: 115 ARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGY 170

Query: 180 PT 181
           P+
Sbjct: 171 PS 172


>gi|14278500|pdb|1IO2|A Chain A, Crystal Structure Of Type 2 Ribonuclease H From
           Hyperthermophilic Archaeon, Thermococcus Kodakaraensis
           Kod1
          Length = 213

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 38/182 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---- 77
           +AGIDE GRG + GP+V+AA+++D N++P      + DSKK++ K+RE+L+ +I      
Sbjct: 3   IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62

Query: 78  -------SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED-- 128
                    +I     +    +  N  K        A+ +L+V P     D   + E+  
Sbjct: 63  YVILELPPDVIGSREGTLNEFEVENFAK--------ALNSLKVKPDVIYADAADVDEERF 114

Query: 129 ---------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
                       +  A  K D I   ++AASI+AKVTRDR +    ++Y + G     GY
Sbjct: 115 ARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGY 170

Query: 180 PT 181
           P+
Sbjct: 171 PS 172


>gi|284161145|ref|YP_003399768.1| ribonuclease HII [Archaeoglobus profundus DSM 5631]
 gi|284011142|gb|ADB57095.1| ribonuclease HII [Archaeoglobus profundus DSM 5631]
          Length = 211

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 19/171 (11%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII 81
           +AGIDE G+G + GP+V+  ++ D   + +    G+ DSKK+  +KREELY  I S   +
Sbjct: 2   IAGIDEAGKGPVIGPLVICGVLCDEETVEYLKSVGVKDSKKLDRRKREELYNIIKSLCKV 61

Query: 82  SISSASHQYIDKHNIHKATLDAIYHA-VENLQ-VIPRSALID---------GRSIPEDLP 130
            +   S + +++   + +  + +  A VE ++ ++P+   ID            I E   
Sbjct: 62  KVLKISVEDLNRLMEYMSINEILKRAYVEIIRSLMPKVVYIDCPDINVERFKHEIEERTG 121

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
            + FA  K D I   ++ ASI+AKV RD  +    K Y D+G     GYP+
Sbjct: 122 VEVFASHKADEIYPIVSIASIVAKVERDFEIDKLKKIYGDFG----SGYPS 168


>gi|254173516|ref|ZP_04880188.1| ribonuclease HII [Thermococcus sp. AM4]
 gi|214032208|gb|EEB73038.1| ribonuclease HII [Thermococcus sp. AM4]
          Length = 230

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 96/187 (51%), Gaps = 28/187 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS--- 78
           +AGIDE GRG + GP+V+AA+++D + +      G+ DSKK++ ++RE L+++I +    
Sbjct: 7   LAGIDEAGRGPVIGPMVIAAVVVDEDKLGNLEELGVKDSKKLTPRRRERLFDEIIAQLDD 66

Query: 79  -AIISISSASHQYID--KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135
             II +     + ID  K  +++  ++    A+ +L+V P    ID   + E    +A  
Sbjct: 67  YVIIELWP---EEIDSRKVTLNEFEVENFAKALNSLKVRPDVVYIDAADVKEGRFGEAVG 123

Query: 136 VI-----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
            +           + D   + ++AASI+AKV RDR +    ++Y + G     GYP+   
Sbjct: 124 RLLSFKAEIVAEHRADDKFVPVSAASILAKVVRDRAIERLKREYGEIG----SGYPSDPR 179

Query: 185 QQVIKEK 191
            +   EK
Sbjct: 180 TREFLEK 186


>gi|134104116|pdb|2DFE|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-200)-C
          Length = 209

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 38/182 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---- 77
           +AGIDE GRG + GP+V+AA+++D N++P      + DSKK++ K+RE+L+ +I      
Sbjct: 3   IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62

Query: 78  -------SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED-- 128
                    +I     +    +  N  K        A+ +L+V P     D   + E+  
Sbjct: 63  YVILELPPDVIGSREGTLNEFEVENFAK--------ALNSLKVKPDVIYADAADVDEERF 114

Query: 129 ---------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
                       +  A  K D I   ++AASI+AKVTRDR +    ++Y + G     GY
Sbjct: 115 ARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGY 170

Query: 180 PT 181
           P+
Sbjct: 171 PS 172


>gi|126178454|ref|YP_001046419.1| ribonuclease HII [Methanoculleus marisnigri JR1]
 gi|125861248|gb|ABN56437.1| RNase HII [Methanoculleus marisnigri JR1]
          Length = 205

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 100/203 (49%), Gaps = 31/203 (15%)

Query: 29  IDEVGRGALAGPVVVAAI----ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           +DE G+G++ GP+VVAA+    I D   +P  I DSK +  K+RE LYE +     I+I 
Sbjct: 1   MDEAGKGSVLGPMVVAAVGCREIEDLATLP--IRDSKVLRPKQREALYEILFRDFSIAIV 58

Query: 85  SASHQYID--KHNIHKATLDAIYHAVENLQVIPRSALID---------GRSIPE--DLPC 131
           +     ID  +  +   T  A  HA   + + P  A +D         GR++ E  D PC
Sbjct: 59  TIDAAGIDDARSRMSMNTCVAELHAEALMSLQPEYAYVDACDVNAERYGRTVAELLDYPC 118

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH-----QQ 186
           +  A    D+    + AAS++AKVTRDR +R   ++Y   G     GYP+        + 
Sbjct: 119 EIVAEHHADARHKVVGAASVVAKVTRDRAIRELEQQYGAIG----SGYPSDPATIEFLRG 174

Query: 187 VIKEKG--PSCIHRLTFRPLRNL 207
            I+  G  P+C  R +++ + NL
Sbjct: 175 YIRSHGSPPACARR-SWKTVTNL 196


>gi|297571158|ref|YP_003696932.1| ribonuclease H [Arcanobacterium haemolyticum DSM 20595]
 gi|296931505|gb|ADH92313.1| Ribonuclease H [Arcanobacterium haemolyticum DSM 20595]
          Length = 224

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 16/193 (8%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI---PFGINDSKKISHKKREELYEKITSS-AII 81
           +AG+DEVGRG++AGP  V   +++ + +   P G+ DSK IS   RE L E +    +  
Sbjct: 24  LAGVDEVGRGSIAGPASVGIALVNTDTVDEFPVGLRDSKMISAHVRESLVEPVHEWVSAY 83

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIP-RSALIDGR--SIPEDLPCQAFAV-- 136
           ++  AS Q +++  I  A   A   A+E L        L+DG       D    A A   
Sbjct: 84  AVGHASPQDVNEAGILGALRIAAARALEQLDGFEIAGVLLDGSHDWWSSDGLFDAGATLP 143

Query: 137 -------IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                  +KGD+    +AAAS++AKV RDR+M  + + +P YGF+ + GY +A+H   ++
Sbjct: 144 VLPVRMEVKGDARCAVVAAASVLAKVERDRIMVESAEAFPGYGFERNKGYASAEHIHGLE 203

Query: 190 EKGPSCIHRLTFR 202
             G S  HR  ++
Sbjct: 204 TLGASAFHRTAWK 216


>gi|296129323|ref|YP_003636573.1| Ribonuclease H [Cellulomonas flavigena DSM 20109]
 gi|296021138|gb|ADG74374.1| Ribonuclease H [Cellulomonas flavigena DSM 20109]
          Length = 279

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 26/219 (11%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKK 67
           PH   E  +    +  VAG+DEVGRG+LAGPV V  +++D    + P G+ DSK ++   
Sbjct: 30  PHLRHERALLRTGLRYVAGMDEVGRGSLAGPVSVGVVVVDVGTRSAPRGVADSKLLTPAA 89

Query: 68  REELYEKITSSAII-SISSASHQYIDKHNIHKA-------TLDAIYHAVENLQVIPRSAL 119
           R  L   +    +  ++  AS   ID   I  A        L ++   VE +  +     
Sbjct: 90  RAALLPSLGRWGVARAVGHASPTEIDDRGIVAALRLAGTRALRSVLEVVEQVDAVVLDGS 149

Query: 120 IDGRSIPE---------------DLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRI 163
            D  + PE               DL   A  + +K D    ++AAAS++AK  RD LM  
Sbjct: 150 HDWLTPPEPDLFGTQSELFAPSPDLRVPAVHLRVKADRSCATVAAASVLAKCERDALMVQ 209

Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
               +P+Y +D + GY + +H   ++E GP+ +HR ++R
Sbjct: 210 HAAAHPEYRWDENKGYASPEHVAALRELGPTPLHRRSWR 248


>gi|88191784|pdb|1X1P|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-197)-A(28-42)
          Length = 212

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 89/182 (48%), Gaps = 38/182 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---- 77
           +AGIDE GRG + GP+V+AA+++D N++P      + DSKK++ K+RE+L+ +I      
Sbjct: 3   IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62

Query: 78  -------SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID--------- 121
                    +I     +    +  N  K        A+ +L+V P     D         
Sbjct: 63  YVILELPPDVIGSREGTLNEFEVENFAK--------ALNSLKVKPDVIYADAADVDEERF 114

Query: 122 GRSIPEDLPCQAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
            R + E L  +A  V   K D I   ++AASI+AKVTRDR +    ++Y + G     GY
Sbjct: 115 ARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGY 170

Query: 180 PT 181
           P+
Sbjct: 171 PS 172


>gi|323452074|gb|EGB07949.1| hypothetical protein AURANDRAFT_6827 [Aureococcus anophagefferens]
          Length = 156

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 88/164 (53%), Gaps = 11/164 (6%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK-REELYEKI--TSSAIISIS 84
           G+DEVGRG LAGPVV  A  L P      + DSK+++ +  RE +Y ++  T     +++
Sbjct: 1   GVDEVGRGCLAGPVVTCACYLPPGAEIDDLTDSKQLATEDLREAVYARLLATPGLRFALA 60

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    +D+ NI +A L A+  A E L       L  G     DL      + KGD+   
Sbjct: 61  KAEAPVVDELNILQANLQAMRTASEALC----DRLAAGGERGGDLE----VLDKGDASVS 112

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           +I+AAS+IAKVTRDR+M      YP+Y + S+   P A  ++++
Sbjct: 113 AISAASVIAKVTRDRIMNALAGDYPEYDWASNKQRPVAVFREIL 156


>gi|255994295|ref|ZP_05427430.1| ribonuclease HII [Eubacterium saphenum ATCC 49989]
 gi|255993008|gb|EEU03097.1| ribonuclease HII [Eubacterium saphenum ATCC 49989]
          Length = 283

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 69/130 (53%), Gaps = 6/130 (4%)

Query: 72  YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           +EK T S II  +  +H   D  N            V N   I  + L+D   + +D+  
Sbjct: 158 HEKFTLSRIIPNTEKTH---DDRNRDDGNSAKCSDGVLNKDEI--TLLVDAVKL-DDVGT 211

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++I+GD  S SIAA+SI+AKV RD +M+ A + YP Y F S+ GY T +H + IK  
Sbjct: 212 PVHSIIRGDEKSYSIAASSIVAKVIRDEMMKKADEMYPGYDFKSNKGYGTKRHYEGIKLY 271

Query: 192 GPSCIHRLTF 201
           G S IHR TF
Sbjct: 272 GISDIHRKTF 281



 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 1/149 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85
           AG+DEVGRG +AGPVV A + +  ++   GI+DSKK++   R +L++KI   A  I I  
Sbjct: 32  AGMDEVGRGPIAGPVVSACVCMKADSEILGIDDSKKVTKAGRIKLFDKIIEDARAIGIGI 91

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
             H  ID+ NI  AT  A+  A+ ++  + R+    G  +  +      +V + D++ L 
Sbjct: 92  VPHNIIDRINILNATKLAMRAALYDMLSVKRAVGSSGIILSYESLVNTLSVFESDALFLL 151

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFD 174
             ++    K T  R++    K + D   D
Sbjct: 152 NVSSLSHEKFTLSRIIPNTEKTHDDRNRD 180


>gi|307353890|ref|YP_003894941.1| ribonuclease HII [Methanoplanus petrolearius DSM 11571]
 gi|307157123|gb|ADN36503.1| ribonuclease HII [Methanoplanus petrolearius DSM 11571]
          Length = 212

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 102/203 (50%), Gaps = 25/203 (12%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
           + GIDE G+G++ GP+V+  +        +  G  DSK +S ++RE+ YE+I +    + 
Sbjct: 2   ICGIDEAGKGSVLGPMVIGGVAGKDLSEFVKKGFADSKTLSPRRREQFYEEIVAEFKTTT 61

Query: 84  SSASHQYID--KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF------- 134
              S   ID  + ++    + A  HA     ++P +A +D   + E    +         
Sbjct: 62  VVLSAAMIDELRSSMTMNEIVARSHARAITDLMPDTAYVDACDVNEVRYAETISGFLKND 121

Query: 135 -AVI---KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-----AKHQ 185
            A++   K D +   ++AASI+AKVTRDR++     ++ + G     GYP+     A  +
Sbjct: 122 IAIVSKHKADDLYAVVSAASIVAKVTRDRMIEDLKSQWGNIG----SGYPSDPDTIAFLK 177

Query: 186 QVIKEKG-PSCIHRLTFRPLRNL 207
           + I+E+G P  I R++++ + N+
Sbjct: 178 RYIEERGEPPSIARMSWKTISNM 200


>gi|134045249|ref|YP_001096735.1| ribonuclease HII [Methanococcus maripaludis C5]
 gi|189043624|sp|A4FWE5|RNH2_METM5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|132662874|gb|ABO34520.1| RNase HII [Methanococcus maripaludis C5]
          Length = 239

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 105/218 (48%), Gaps = 36/218 (16%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI 75
           E N   + G+DE GRG + GP+V+A++ ++  ++P     G+ DSK++S KKREELY KI
Sbjct: 14  ESNGKIIVGLDEAGRGPVIGPMVIASVKINEKDLPRLDDLGLRDSKQLSKKKREELYTKI 73

Query: 76  TSSAIISISSASHQYIDKH----NIHKATLDAI----YHAVENLQVIPRSALIDGRSIPE 127
           +    +     + + ID+     N++K  L A      H ++  + I  S  ID  S  E
Sbjct: 74  SEICDVKKVVINPEKIDEQMEIINLNKIELGAFSKLANHFIKENENI--SIYIDACSSNE 131

Query: 128 DLPCQAF------------AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
                 F            A  K D     ++AASIIAKVTRD ++    K + + G   
Sbjct: 132 QSFSNQFKAKLINKNVEIIAEHKADENYKIVSAASIIAKVTRDNVIEEYKKTFGEIG--- 188

Query: 176 HVGYPTA-KHQQVIK-----EKGPSCIHRLTFRPLRNL 207
             GYP+  K ++ +K      KG   I R ++   +NL
Sbjct: 189 -SGYPSDPKTKKFLKNYVHENKGLPKIARKSWATSKNL 225


>gi|320096209|ref|ZP_08027796.1| ribonuclease HII [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319976857|gb|EFW08613.1| ribonuclease HII [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 225

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 103/200 (51%), Gaps = 25/200 (12%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREELYEKITSSAI-IS 82
           VAG+DEVGRG+LAGPV V   +  P   + P G+ DSK ++ K+RE L   +   A+  +
Sbjct: 21  VAGVDEVGRGSLAGPVAVGVALTSPGAADPPAGLVDSKALTAKRREALAPAVRQWALDCA 80

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQV---IPRSALIDGR----SIPEDL------ 129
           +  A    ID+  I  A   A   A++ L     +P + ++DG     ++PEDL      
Sbjct: 81  VGWAGPDEIDQWGIVAALRLAGLRALDELAGRGRVPGAVVLDGSHNWLAMPEDLLGGLGG 140

Query: 130 -------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
                  P    A +K D+    +AAAS+IAKV RDRLM  A    P Y +  + GY +A
Sbjct: 141 PDYPPPCPAPIRARVKADASCAVVAAASVIAKVERDRLM--AELDDPGYEWSRNKGYASA 198

Query: 183 KHQQVIKEKGPSCIHRLTFR 202
            H   + E GPS  HR +++
Sbjct: 199 AHIAALAELGPSAHHRRSWK 218


>gi|312133301|ref|YP_004000640.1| rnhb [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772513|gb|ADQ02001.1| RnhB [Bifidobacterium longum subsp. longum BBMN68]
          Length = 275

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 125/273 (45%), Gaps = 85/273 (31%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAII------LDPNN--------- 52
           P  +LE ++  +    +AG DEVGRGALAGPV+V  AAI       LD ++         
Sbjct: 4   PTLDLERILAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63

Query: 53  --IPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKA---------- 99
             +P G+ DSK ++  +RE +++++    A  ++  AS+  ID+  I  A          
Sbjct: 64  LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123

Query: 100 -------------------------------TLDAIYHAVENLQVIPRSA-LIDGRS--- 124
                                            ++I +  E+++ +P+ A ++DG S   
Sbjct: 124 QVERELGLRLGGGLTAKKAAGEIVEGRPGDSVGESIGNCGESVRALPKVAGILDGPSDYI 183

Query: 125 -------------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM---RIAHKKY 168
                        IP D+  +    +KGD    ++A A++IAKVTRDRLM     ++ +Y
Sbjct: 184 TKALNTFDAPDVPIPADITTK----VKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRY 239

Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             Y +  + GY +A H+  I E GP+ +HR+++
Sbjct: 240 AAYEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 272


>gi|291456102|ref|ZP_06595492.1| ribonuclease HII [Bifidobacterium breve DSM 20213]
 gi|291382511|gb|EFE90029.1| ribonuclease HII [Bifidobacterium breve DSM 20213]
          Length = 286

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 113/279 (40%), Gaps = 87/279 (31%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVA------------------------- 44
           P  +LE  +  +    + G DEVGRGALAGPV+V                          
Sbjct: 5   PTLDLERSLASQGYDLIVGFDEVGRGALAGPVMVGCAAIWARDLKPDADGELAQAAGSAA 64

Query: 45  -----------AIILDPN-----NIPFGINDSKKISHKKREELYEKITS-SAIISISSAS 87
                      A ++ PN     ++P G+ DSK ++  +RE +++++ S  A  ++  +S
Sbjct: 65  SSRVSGDNGTDAGVITPNPAPYLSVPAGVADSKMLTEHRREAIFDELCSWCAAYAVGQSS 124

Query: 88  HQYIDKHNIHKA----TLDAIYHAVENLQV-----IPRSA----LIDGRSIPEDLPCQAF 134
           +  ID+  I  A     L A+     +L V      PR        +GR +P   P    
Sbjct: 125 NAEIDEWGITYALGVAALRALNQVERDLGVGSEFGSPREGSCLTATEGRPLPSRRPITIG 184

Query: 135 AVIKGDSISLSIAAASIIA-----------------------------KVTRDRLM-RIA 164
           A++ G S  ++ A  +  A                             KVTRDRLM  IA
Sbjct: 185 AILDGPSDYITKALNTFDAPDVPIPADVTTKVKGDQHCATVATAAVIAKVTRDRLMVSIA 244

Query: 165 HK--KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
               +Y  Y +D + GY +A H+  I E GP+ +HR ++
Sbjct: 245 QGNPRYAAYEWDHNKGYGSAAHRAAIAEYGPTPLHRTSW 283


>gi|313609088|gb|EFR84798.1| ribonuclease HII [Listeria monocytogenes FSL F2-208]
          Length = 142

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 15/100 (15%)

Query: 9   RPHFELEAMVR---------EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIP 54
           R  +E EA +R         EK+++      +AG+DEVGRG LAGPVV AA+IL  +   
Sbjct: 42  RRKWEKEAQLRNKLEEMKQYEKDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSV 101

Query: 55  FGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDK 93
            GINDSK++S  KR+ LYE I + AI + +    H  ID+
Sbjct: 102 VGINDSKQLSEAKRDALYETIQTEAIAVGVGIIEHNVIDQ 141


>gi|145590574|ref|YP_001152576.1| ribonuclease HII [Pyrobaculum arsenaticum DSM 13514]
 gi|189043645|sp|A4WHQ7|RNH2_PYRAR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|145282342|gb|ABP49924.1| RNase HII [Pyrobaculum arsenaticum DSM 13514]
          Length = 198

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 92/177 (51%), Gaps = 24/177 (13%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSSAIISIS 84
           V GIDE GRG + GP+V+A ++ D   +   G+ DSK +S + RE LY KI   A+    
Sbjct: 5   VGGIDEAGRGPVVGPLVLAIVVGDSEALSKIGVRDSKSLSPRAREVLYGKILEMAVCVNY 64

Query: 85  SASHQY-IDKHNIHKATLDAI--YHAVENLQVIPR------------SALIDGRSIPEDL 129
           +    Y ID H + +  L+A+   +A + +++ P             +   DG S     
Sbjct: 65  AVVEPYEIDLH-VSRGMLNALEMKYAAKLMELCPADLYYVDSPDVKAARFGDGLSFLTGR 123

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             +  ++ KG+++   +AAASI+AKV RDRL+ +  K+  D+G     GYP+ +  +
Sbjct: 124 --RVVSLHKGEAVP-QVAAASIVAKVVRDRLVEMLRKEVGDFG----SGYPSDRKTR 173


>gi|329571609|gb|EGG53290.1| putative ribonuclease HII [Enterococcus faecalis TX1467]
          Length = 137

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 41/55 (74%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S KKRE LY +I   A+
Sbjct: 74  IAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLYNQIQEQAV 128


>gi|240103148|ref|YP_002959457.1| ribonuclease HII [Thermococcus gammatolerans EJ3]
 gi|239910702|gb|ACS33593.1| Ribonuclease HII (rnhB) [Thermococcus gammatolerans EJ3]
          Length = 226

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 90/177 (50%), Gaps = 28/177 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS--- 78
           +AGIDE GRG + GP+V+AA+++D   +      G+ DSKK++  +RE L+++I +    
Sbjct: 5   IAGIDEAGRGPVIGPMVIAAVVVDEEKLKSLEELGVRDSKKLTPGRRERLFDEIIAQLDD 64

Query: 79  -AIISISSASHQYIDKHNI--HKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135
             II +     + ID   +  ++  ++    A+ +L+V P    ID   + E    +A  
Sbjct: 65  YVIIELWP---EEIDSREVTLNEFEVENFSKALNSLKVKPDVVYIDAADVKEGRFGEAIG 121

Query: 136 VI-----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
            +           + D   + ++AASI+AKV RDR +    ++Y + G     GYP+
Sbjct: 122 KLLKFKAEIVAEHRADDKFVPVSAASILAKVVRDRAIEKLKEEYGEIG----SGYPS 174


>gi|88602504|ref|YP_502682.1| ribonuclease HII [Methanospirillum hungatei JF-1]
 gi|115305550|sp|Q2FP80|RNH2_METHJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|88187966|gb|ABD40963.1| RNase HII [Methanospirillum hungatei JF-1]
          Length = 212

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 97/204 (47%), Gaps = 27/204 (13%)

Query: 26  VAGIDEVGRGALAGPVVVAAI-ILDPNN-IPFGINDSKKISHKKREELYEKITSSAIISI 83
           + G+DE G+G++ GP+VVAA+   D ++ I  G+ DSKK+S K RE++   I +    SI
Sbjct: 2   ICGVDEAGKGSVLGPMVVAAVGCTDMDDLIALGVADSKKLSSKSREKISADIKAQFPFSI 61

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIP---RSALIDGRSIPEDL----------- 129
              +   ID+      T++ I        +IP     A +D   + E+            
Sbjct: 62  VIRTAHDIDELR-RTMTMNEIVARSHAEALIPLNCTCAYVDACDVSEERYEETVSSFSPP 120

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP------TAK 183
            C   A  K DS+   ++AASIIAKV RDR++    K+Y D G     GYP      T  
Sbjct: 121 DCTIVARHKADSLFPPVSAASIIAKVERDRIIEELSKEYGDIG----SGYPSDPVTITYL 176

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
            + +     P  I R ++  ++NL
Sbjct: 177 TKYIRHHNQPPVIARSSWETVKNL 200


>gi|320532025|ref|ZP_08032917.1| ribonuclease HII [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320135759|gb|EFW27815.1| ribonuclease HII [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 240

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 96/209 (45%), Gaps = 35/209 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISHKKREELYEKITSSAII- 81
           V G+DEVGRGALAGPV V   I+     +  P G+ DSK+++ + R  L + + S  +  
Sbjct: 24  VGGLDEVGRGALAGPVSVGLAIVARRTDDGFPEGLADSKQLTARARRGLVDPVRSWLVDH 83

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQ-------VIPRSALIDGRSIP-------- 126
           +++ AS   ID+  I  A   A   A++ +        +I    + D  + P        
Sbjct: 84  AVAHASPAEIDERGIVGALRMAGLRALQQVADRGHAPGIIILDGVADWLTAPQPDLLTAL 143

Query: 127 EDLPCQAFAV--------------IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172
           E  P   FA               +K D+    +AAASI+AKV RD LM       P YG
Sbjct: 144 EGAPPFRFAPEPVAVPSTPPVLMEVKADARCAVVAAASILAKVERDALM--VDLDDPGYG 201

Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           + S+ GY +  H + +   G S  HR ++
Sbjct: 202 WASNKGYASPAHIKGLSALGASDQHRRSW 230


>gi|218887966|ref|YP_002437287.1| ribonuclease H [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758920|gb|ACL09819.1| Ribonuclease H [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 292

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 46/71 (64%)

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
           AV+ GD++  +++AASI+AK  RD+LM    +++P YG   H GY TA+H   I E GP 
Sbjct: 211 AVVGGDALVPAVSAASILAKTFRDQLMTALDRRFPHYGLAVHKGYGTAEHMAAIAEHGPC 270

Query: 195 CIHRLTFRPLR 205
             HR TFR +R
Sbjct: 271 PQHRATFRGVR 281



 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 56/99 (56%), Gaps = 11/99 (11%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNN--------IP--FGINDSKKISHKKREELYEK 74
           P  GIDE GRG LAGPVV AA+IL P+         +P   G+ DSKK++  KRE L  +
Sbjct: 17  PYVGIDEAGRGCLAGPVVAAAVILPPHADAATLADLLPDLAGLTDSKKLTAAKREALAPR 76

Query: 75  ITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQ 112
           I   A+   +     + I++ NI +AT  A++ AV  L+
Sbjct: 77  IRQHAVAWGLGVVWPRDIERINILQATFHAMWRAVRFLR 115


>gi|18312482|ref|NP_559149.1| ribonuclease HII [Pyrobaculum aerophilum str. IM2]
 gi|74564756|sp|Q8ZXL6|RNH2_PYRAE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|18159942|gb|AAL63331.1| ribonuclease HII (rnhB) [Pyrobaculum aerophilum str. IM2]
          Length = 212

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 96/178 (53%), Gaps = 36/178 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITS-SAIISI 83
           + GIDE GRG + GP+V+A ++ + ++ I  G+ DSK++S   RE +YEKI   +A ++ 
Sbjct: 2   IGGIDEAGRGPVIGPMVIAIVVGESDDMIKIGVRDSKRLSPGAREAVYEKILRVAACVNY 61

Query: 84  SSASHQYIDKHNIHKATLDAI---------------YHAVENLQVIPR---SALI--DGR 123
                  ID + + +  L+A+               Y+ V++  V P+   S L+   G+
Sbjct: 62  VVIEPAEIDAY-VSRGMLNALELKYTAQLINLCPAEYYYVDSPDVNPKRYESGLVFATGK 120

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
            +         A+ KG+++   +AAASI+AKV RDRL+++  K+  D+G     GYP+
Sbjct: 121 RV--------IALHKGEAVP-QVAAASIVAKVVRDRLIQLLKKEVGDFGS----GYPS 165


>gi|14591420|ref|NP_143500.1| ribonuclease HII [Pyrococcus horikoshii OT3]
 gi|7227917|sp|O59351|RNH2_PYRHO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|50513813|pdb|1UAX|A Chain A, Crystal Structure Of The Ribonuclease H2 From Pyrococcus
           Horikoshii Ot3
 gi|50513814|pdb|1UAX|B Chain B, Crystal Structure Of The Ribonuclease H2 From Pyrococcus
           Horikoshii Ot3
 gi|3258079|dbj|BAA30762.1| 220aa long hypothetical ribonuclease H II [Pyrococcus horikoshii
           OT3]
          Length = 220

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 93/176 (52%), Gaps = 26/176 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81
           VAG+DE GRG + GP+V+   ++D  NI      G+ DSK+++  +RE+L+ K+    I+
Sbjct: 3   VAGVDEAGRGPVIGPLVIGVAVIDEKNIERLRDIGVKDSKQLTPGQREKLFSKLID--IL 60

Query: 82  S---ISSASHQYIDK--HNIHKATLDAIYHAVENLQVIPRSALIDGRS---------IPE 127
               +   + + ID+  H++++   +    A+ +L++ P+   +D            I  
Sbjct: 61  DDYYVLLVTPKEIDERHHSMNELEAEKFVVALNSLRIKPQKIYVDSADVDPKRFASLIKA 120

Query: 128 DLPCQAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
            L  +A  +   K D+    ++AASIIAKVTRDR +    +KY ++G     GYP+
Sbjct: 121 GLKYEATVIAEHKADAKYEIVSAASIIAKVTRDREIEKLKQKYGEFG----SGYPS 172


>gi|154151483|ref|YP_001405101.1| ribonuclease HII [Candidatus Methanoregula boonei 6A8]
 gi|166226624|sp|A7I9P7|RNH2_METB6 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|154000035|gb|ABS56458.1| ribonuclease HII [Methanoregula boonei 6A8]
          Length = 213

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 19/171 (11%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITSSAIISI 83
           + G+DE G+G++ GP+V+A + +    +   FG+ DSK++S  +RE L+  I     ++ 
Sbjct: 2   ICGVDEAGKGSVLGPMVIAGVGVGSTEMIDGFGLRDSKQLSPSERERLFVLIKKKCKVAT 61

Query: 84  SSASHQYID--KHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-----PEDL------P 130
              S   ID  +  +   T  A  HAV   Q+ P  A +D   +      E +      P
Sbjct: 62  VVISAAEIDAFRREMTLNTCVARAHAVVIAQLAPEIAYVDACDVNPFRYAETVRGYLSSP 121

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           C+  +    DS    ++AASI+AKVTRDR +    KKY   G     GYP+
Sbjct: 122 CEIVSEHHADSTYPVVSAASIVAKVTRDREIAKLAKKYGQIG----SGYPS 168


>gi|18978153|ref|NP_579510.1| ribonuclease HII [Pyrococcus furiosus DSM 3638]
 gi|24638181|sp|Q8U036|RNH2_PYRFU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|18893958|gb|AAL81905.1| RNaseH II [Pyrococcus furiosus DSM 3638]
          Length = 224

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 91/178 (51%), Gaps = 30/178 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA-I 80
           + GIDE GRG   GP+VVA +++D  NI      G+ DSK+++  +R+ L+ +ITS A  
Sbjct: 3   IGGIDEAGRGPAIGPLVVATVVVDEKNIEKLRNIGVKDSKQLTPHERKNLFSQITSIADD 62

Query: 81  ISISSASHQYIDKHN--IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI- 137
             I   S + ID  +  +++  ++    A+ +LQ+ P  ALI   +   D+    FA + 
Sbjct: 63  YKIVIVSPEEIDNRSGTMNELEVEKFALALNSLQIKP--ALIYADAA--DVDANRFASLI 118

Query: 138 --------------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                         K D+    ++AASI+AKV RD  +    K+Y D+G     GYP+
Sbjct: 119 ERRLNYKAKIIAEHKADAKYPVVSAASILAKVVRDEEIEKLKKQYGDFG----SGYPS 172


>gi|290769753|gb|ADD61528.1| putative protein [uncultured organism]
          Length = 279

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 124/277 (44%), Gaps = 89/277 (32%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAII------LDPNN--------- 52
           P  +LE  +  +    +AG DEVGRGALAGPV+V  AAI       LD ++         
Sbjct: 4   PTLDLERSLAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63

Query: 53  --IPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKA---------- 99
             +P G+ DSK ++  +RE +++++    A  ++  AS+  ID+  I  A          
Sbjct: 64  LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123

Query: 100 -----------------------------------TLDAIYHAVENLQVIPR-SALIDGR 123
                                                ++I +  E+++ +P+ + ++DG 
Sbjct: 124 QVERELGLRLGGESTIKKASGESAGKIVEGRPGDSVGESIGNCGESVRALPKVAGILDGP 183

Query: 124 S----------------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM---RIA 164
           S                IP D+  +    +KGD    ++A A++IAKVTRDRLM     +
Sbjct: 184 SDYITKALNTFDAPDVPIPADITTK----VKGDQHCATVATAAVIAKVTRDRLMVDLAQS 239

Query: 165 HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           + +Y  Y +  + GY +A H+  I E GP+ +HR+++
Sbjct: 240 NPRYAAYEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 276


>gi|15645936|ref|NP_208115.1| ribonuclease HII [Helicobacter pylori 26695]
 gi|2500560|sp|P56121|RNH2_HELPY RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|2314491|gb|AAD08367.1| ribonuclease HII (rnhB) [Helicobacter pylori 26695]
          Length = 209

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 11/188 (5%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS- 82
           GIDE GRG LAG + VA +  +       +  G+ DSKK+S KKR  L  KI +   +  
Sbjct: 9   GIDEAGRGCLAGSLFVAGVACNEKTALEFLKMGLKDSKKLSLKKRFFLEYKIKTHGEVGF 68

Query: 83  -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138
            +   S   ID   +      A+   +EN   +     IDG +   + +  P     +IK
Sbjct: 69  FVVKKSANEIDSLGLGACLKLAVQEILENGCSLVDEIKIDGNTAFGLNKRYP-HIQTIIK 127

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD     IA AS++AK  +DR M   H  + +YG+D + GY T +H + I + G +  HR
Sbjct: 128 GDETIAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHR 187

Query: 199 LTFRPLRN 206
            +F  L+N
Sbjct: 188 HSF-TLKN 194


>gi|154333788|ref|XP_001563149.1| ribonuclease hii [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134060161|emb|CAM45568.1| putative ribonuclease HII [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 255

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 104/246 (42%), Gaps = 77/246 (31%)

Query: 37  LAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSS---------------- 78
           +AGPV VAA +   +  P  + + DSK++    R E  E + +                 
Sbjct: 1   MAGPVSVAATLYRVSATPVRYTVGDSKRMKESARAETLEAMCAELSDAGIKGFLETTMRD 60

Query: 79  --------------AIISISSASHQYIDKHNIHKATLDAI----------YHAVENLQVI 114
                           +S      + I   NI  ATL+ +          Y+AV  LQ++
Sbjct: 61  GACCVVRYQQRQPLQAVSAVLVDIEVIHGRNILNATLEGMSAVCNTIVRSYNAVRGLQIL 120

Query: 115 -PRSA--LIDGRSIP---------EDLPCQAF----------------------AVIKGD 140
            P +   LIDG  +P         + +  QA                       AVIKGD
Sbjct: 121 TPLTCAILIDGNRVPWTFLSSEERQQVRMQAVKNVEARKRIGVDYPVLDGFGCTAVIKGD 180

Query: 141 SISLSIAAASIIAKVTRDR-LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           +  LSIAAAS++AKV RD  +M + H+ +P YGFD H GY TA H+  +   GPS  HR+
Sbjct: 181 ATVLSIAAASVVAKVARDAYVMTVMHRAFPHYGFDYHKGYCTAAHKMELARWGPSRFHRV 240

Query: 200 TFRPLR 205
            + P++
Sbjct: 241 DYAPVK 246


>gi|322688522|ref|YP_004208256.1| ribonuclease HII [Bifidobacterium longum subsp. infantis 157F]
 gi|320459858|dbj|BAJ70478.1| ribonuclease HII [Bifidobacterium longum subsp. infantis 157F]
          Length = 279

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 126/277 (45%), Gaps = 89/277 (32%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAII------LDPNN--------- 52
           P  +LE ++  +    +AG DEVGRGALAGPV+V  AAI       LD ++         
Sbjct: 4   PTLDLERILAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63

Query: 53  --IPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNI------------- 96
             +P G+ DSK ++  +RE +++++    A  ++  AS+  ID+  I             
Sbjct: 64  LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNAEIDEWGITYALGVAALRALS 123

Query: 97  ----------------HKATLDAIYHAVE----------------NLQVIPR-SALIDGR 123
                            KA+ ++    VE                +++ +P+ + ++DG 
Sbjct: 124 QVERELGLRLGGESTIKKASGESAGEIVEGRPGGSVGEFIGNCGGSVRALPKVAGILDGP 183

Query: 124 S----------------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM---RIA 164
           S                IP D+  +    +KGD    ++A A++IAKVTRDRLM     +
Sbjct: 184 SDYITKALNTFDAPDVPIPADITTK----VKGDQHCATVATAAVIAKVTRDRLMVDLAQS 239

Query: 165 HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           + +Y  Y +  + GY +A H+  I E GP+ +HR+++
Sbjct: 240 NPRYAAYEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 276


>gi|14520734|ref|NP_126209.1| ribonuclease HII [Pyrococcus abyssi GE5]
 gi|11387114|sp|Q9V1A9|RNH2_PYRAB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|5457950|emb|CAB49440.1| rnhB ribonuclease HII [Pyrococcus abyssi GE5]
          Length = 224

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 91/174 (52%), Gaps = 22/174 (12%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-I 80
           VAG DE GRG + GP+V+ A +++ + I      G+ DSK+++  +RE+L+++I      
Sbjct: 3   VAGADEAGRGPVIGPLVIVAAVVEEDKIRSLTKLGVKDSKQLTPAQREKLFDEIVKVLDD 62

Query: 81  ISISSASHQYID--KHNIHKATLDAIYHAVENLQVIPRSALID---------GRSIPEDL 129
            S+   S Q ID  K ++++  ++    A+ +L+V P    ID           +I   L
Sbjct: 63  YSVVIVSPQDIDGRKGSMNELEVENFVKALNSLKVKPEVIYIDSADVKAERFAENIRSRL 122

Query: 130 PCQAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
             +A  V   K D+    ++AASI+AKV RDR +     +Y D+G     GYP+
Sbjct: 123 AYEAKVVAEHKADAKYEIVSAASILAKVIRDREIEKLKAEYGDFG----SGYPS 172


>gi|257456662|ref|ZP_05621855.1| ribonuclease HII [Treponema vincentii ATCC 35580]
 gi|257445929|gb|EEV20979.1| ribonuclease HII [Treponema vincentii ATCC 35580]
          Length = 165

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 76/160 (47%), Gaps = 20/160 (12%)

Query: 60  SKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR-- 116
            KK+S K+RE     I   A+   I+S     IDK NI +ATL A+  A + L    R  
Sbjct: 3   QKKLSPKRRETARAAILEGALYWHIASMPPDLIDKINILQATLAAMKEAFDRLFARYRRD 62

Query: 117 ------------SALIDGRSIPE---DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM 161
                       + ++DG  +P+   D    A    K D     + AASI+AK  RDR M
Sbjct: 63  SIGKTADIEKSLTVIVDGNQLPDIHGDFNLTAEP--KADGRYPCVMAASILAKTERDRCM 120

Query: 162 RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
              HK+YP Y +D H GY T  H+ +I+  G S I R +F
Sbjct: 121 MEYHKQYPLYRYDLHKGYGTKLHRSLIEVYGASPIQRHSF 160


>gi|256824957|ref|YP_003148917.1| ribonuclease HII [Kytococcus sedentarius DSM 20547]
 gi|256688350|gb|ACV06152.1| ribonuclease HII [Kytococcus sedentarius DSM 20547]
          Length = 252

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 87/195 (44%), Gaps = 18/195 (9%)

Query: 26  VAGIDEVGRGAL--AGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82
           VAG+DEVGRGAL     V V  +       P G+ DSK +S  +RE L  +++   +   
Sbjct: 35  VAGMDEVGRGALAGPVSVGVVVVDAAVGTAPVGVRDSKDLSAARREGLVPQLSRWGVARG 94

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR--SIPEDLPCQAFAV---- 136
           +  A  + ID H I  A   A   A+    V     L+DG    + + L    F +    
Sbjct: 95  VGHAGPEEIDAHGIMAALRMAGRRALAAAGVEVDVVLLDGNHDWLTDPLRSGLFGLQGVA 154

Query: 137 -------IKGDSISLSIAAASIIAKVTRDRLMR--IAHKKYPDYGFDSHVGYPTAKHQQV 187
                   K D    S+AAAS++AKV RD +M           YG++ + GY    H+  
Sbjct: 155 GPAVVTRTKADRTCSSVAAASVLAKVERDGIMTDLAGAPGCAAYGWERNKGYAAGDHRAA 214

Query: 188 IKEKGPSCIHRLTFR 202
           +   GPS  HR ++R
Sbjct: 215 LGSLGPSVHHRRSWR 229


>gi|23464878|ref|NP_695481.1| ribonuclease HII [Bifidobacterium longum NCC2705]
 gi|23325467|gb|AAN24117.1| probable ribonuclease HII [Bifidobacterium longum NCC2705]
 gi|291517371|emb|CBK70987.1| RNase HII [Bifidobacterium longum subsp. longum F8]
          Length = 279

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 126/277 (45%), Gaps = 89/277 (32%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAII------LDPNN--------- 52
           P  +LE ++  +    +AG DEVGRGALAGPV+V  AAI       LD ++         
Sbjct: 4   PTLDLERILAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63

Query: 53  --IPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNI------------- 96
             +P G+ DSK ++  +RE +++++    A  ++  AS+  ID+  I             
Sbjct: 64  LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNAEIDEWGITYALGVAALRALS 123

Query: 97  ----------------HKATLDAIYHAVE----------------NLQVIPR-SALIDGR 123
                            KA+ ++    VE                +++ +P+ + ++DG 
Sbjct: 124 QVERELGLRLGGESTIKKASGESAGEIVEGRPGGSVGESIGNCGGSVRALPKVAGILDGP 183

Query: 124 S----------------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM---RIA 164
           S                IP D+  +    +KGD    ++A A++IAKVTRDRLM     +
Sbjct: 184 SDYITKALNTFDAPDVPIPADITTK----VKGDQHCATVATAAVIAKVTRDRLMVDLAQS 239

Query: 165 HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           + +Y  Y +  + GY +A H+  I E GP+ +HR+++
Sbjct: 240 NPRYAAYEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 276


>gi|150402543|ref|YP_001329837.1| ribonuclease HII [Methanococcus maripaludis C7]
 gi|189043625|sp|A6VGW0|RNH2_METM7 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|150033573|gb|ABR65686.1| ribonuclease HII [Methanococcus maripaludis C7]
          Length = 239

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 103/212 (48%), Gaps = 36/212 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81
           + G+DE GRG + GP+V+A++ ++ N++P     G+ DSK+++ KKREELY KI+    +
Sbjct: 20  IVGLDEAGRGPVIGPMVIASVKINENDLPKLHDLGLKDSKQLTKKKREELYIKISEICDV 79

Query: 82  SISSASHQYIDKH----NIHKATLDAI----YHAVENLQVIPRSALIDGRSIPEDLPCQA 133
                  + ID+     N++K  L A      H ++  + I  S  ID  S  E      
Sbjct: 80  KKIVIDPEKIDEQMEIINLNKIELGAFSKLANHFIKENENI--SIYIDACSSNEQSFSNQ 137

Query: 134 F------------AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           F            A  K D     ++AASIIAKVTRD ++    + + + G     GYP+
Sbjct: 138 FKAKLINKNVEIIAEHKADENYKIVSAASIIAKVTRDNVIEEYKEIFGEIG----SGYPS 193

Query: 182 A-KHQQVIK-----EKGPSCIHRLTFRPLRNL 207
             K ++ +K      KG   I R ++   +NL
Sbjct: 194 DPKTKKFLKNYVHENKGLPKIARKSWATSKNL 225


>gi|296453566|ref|YP_003660709.1| ribonuclease H [Bifidobacterium longum subsp. longum JDM301]
 gi|296182997|gb|ADG99878.1| Ribonuclease H [Bifidobacterium longum subsp. longum JDM301]
          Length = 275

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 123/273 (45%), Gaps = 85/273 (31%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAII------LDPNN--------- 52
           P  +LE  +  +    + G DEVGRGALAGPV+V  AAI       LD ++         
Sbjct: 4   PTLDLERSLAAQGYDLITGFDEVGRGALAGPVMVGCAAIWACDLAPLDGDDSAELSGRTY 63

Query: 53  --IPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKA---------- 99
             +P G+ DSK ++  +RE +++++    A  ++  AS+  ID+  I  A          
Sbjct: 64  LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123

Query: 100 -------------------------------TLDAIYHAVENLQVIPRSA-LIDGRS--- 124
                                            ++I +  E+++ +P+ A ++DG S   
Sbjct: 124 QVERELGLRLGGGLTAKKAAGEIVEGHPGDSVGESIGNCGESVRALPKVAGILDGPSDYI 183

Query: 125 -------------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM---RIAHKKY 168
                        IP D+  +    +KGD    ++A A++IAKVTRDRLM     ++ +Y
Sbjct: 184 TKALNTFDAPDVPIPADITTK----VKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRY 239

Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             Y +  + GY +A H+  I E GP+ +HR+++
Sbjct: 240 AVYEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 272


>gi|183221052|ref|YP_001839048.1| putative ribonuclease H [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|167779474|gb|ABZ97772.1| Putative ribonuclease H [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 154

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 68/140 (48%), Gaps = 28/140 (20%)

Query: 87  SHQYIDKHNIHKATLDAIYHAVENLQVIPR--------SALIDGRSIPEDL--------- 129
           S ++ID+ NI++A    I  A   L V PR        + +  G    E L         
Sbjct: 2   SAKFIDRFNINQAIFYGISRA---LPVNPRQVTGHLHKTGIPLGTQTKETLAPFLFVDGN 58

Query: 130 -------PCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                  P + +  I KGD +  SI+AASI+AK  RD  M     KYP YGF  H GY T
Sbjct: 59  YKLKIHKPIEGYLSIPKGDDLVPSISAASILAKTYRDEYMEKMDAKYPGYGFAKHKGYGT 118

Query: 182 AKHQQVIKEKGPSCIHRLTF 201
            +H++ +++ G S IHRL+F
Sbjct: 119 EEHREALRKLGISPIHRLSF 138


>gi|239917439|ref|YP_002956997.1| ribonuclease HII [Micrococcus luteus NCTC 2665]
 gi|281414071|ref|ZP_06245813.1| ribonuclease HII [Micrococcus luteus NCTC 2665]
 gi|239838646|gb|ACS30443.1| ribonuclease HII [Micrococcus luteus NCTC 2665]
          Length = 250

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 99/198 (50%), Gaps = 23/198 (11%)

Query: 26  VAGIDEVGRGALAGPVVV---AAIILDPNNIPFGINDSKKISHKKREELYEKITS-SAII 81
           VAG+DEVGRGALAGPVVV   A  +     IP  + DSK ++ ++R  L  +I   +A +
Sbjct: 37  VAGMDEVGRGALAGPVVVGVCAVWLPAAGQIPA-VRDSKALTDRRRRALVPQIEDWAAGV 95

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVI----PRSALIDGRS------------- 124
           ++  AS   ID H +  A   A   A   L       P + ++DGR              
Sbjct: 96  ALGEASPAEIDAHGVSAALGLAGRRAWAALCAAVGQEPVALVLDGRDDWLSRSDPDAGPA 155

Query: 125 -IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
             P  LP     +++ +    ++AAASI AKV RD +M     ++P YG+  + GY +A 
Sbjct: 156 PAPRPLPPVPTMLVRAEDRCATVAAASIAAKVARDDVMIALDAEHPGYGWAGNKGYGSAA 215

Query: 184 HQQVIKEKGPSCIHRLTF 201
           H+  + E+G S  HR ++
Sbjct: 216 HRAALTERGASEQHRRSW 233


>gi|66817316|ref|XP_642511.1| hypothetical protein DDB_G0277705 [Dictyostelium discoideum AX4]
 gi|60470610|gb|EAL68588.1| hypothetical protein DDB_G0277705 [Dictyostelium discoideum AX4]
          Length = 507

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 80/161 (49%), Gaps = 26/161 (16%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA---- 79
            +DE G+GAL GP+ ++ ++LD  +  +    G+ DSKK+S K+RE LY+ I   A    
Sbjct: 138 SMDEAGKGALLGPLFISCVVLDDESEKYLKSMGVTDSKKLSPKRREYLYDIIIEHALYYQ 197

Query: 80  -IISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSA----LIDGRSIPEDLPCQA 133
            II  S    Q  + H +++   +  Y  +++ +  +P++     +ID   +      Q 
Sbjct: 198 TIILTSEKIDQRRELHTMNQIETNLFYQLIKDSINNLPKNQQCKIIIDSIEMNTQKYSQP 257

Query: 134 FAV------------IKGDSISLSIAAASIIAKVTRDRLMR 162
           F +             K D   +S+ AASIIAKV RDR M+
Sbjct: 258 FKMEFPPPLYQIYCETKADHKFISVGAASIIAKVERDRWMK 298


>gi|332157881|ref|YP_004423160.1| ribonuclease HII [Pyrococcus sp. NA2]
 gi|331033344|gb|AEC51156.1| ribonuclease HII [Pyrococcus sp. NA2]
          Length = 219

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 89/174 (51%), Gaps = 22/174 (12%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-I 80
           + G+DE GRG + GP+V+ A+++  + +      G+ DSK+++ ++RE ++++I +    
Sbjct: 3   IGGVDEAGRGPVIGPLVIVAVVISEDMLSDLRSIGVRDSKQLTPEQRERIFDEIVNVLDD 62

Query: 81  ISISSASHQYIDKH--NIHKATLDAIYHAVENLQVIPRSALIDGRSIPE----------- 127
            S+   S Q ID    +++   ++    A+ +L V P    +D   + E           
Sbjct: 63  YSVVVVSPQEIDNRSSSLNLLEVEKFALALNSLNVKPSRIYVDSADVDEKRFASLIRAKL 122

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           +   +  A  K D+    +AAASI+AKV RDR +    ++Y D+G     GYP+
Sbjct: 123 NYNAEVIAEHKADAKYEVVAAASILAKVIRDREIEKLKERYGDFG----SGYPS 172


>gi|20093626|ref|NP_613473.1| ribonuclease HII [Methanopyrus kandleri AV19]
 gi|74561281|sp|Q8TYV5|RNH2_METKA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|19886492|gb|AAM01403.1| Ribonuclease HII [Methanopyrus kandleri AV19]
          Length = 210

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 18/168 (10%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           V GIDE GRG + GP+VVA ++     +  G  DSK+++   R  L   + S   + +  
Sbjct: 4   VMGIDEAGRGPVFGPMVVAGVLAPKRELGLGARDSKELTRSARRRLIRALMSDERLRVDL 63

Query: 86  --ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID--GRSIPE------DLP--CQA 133
                  ID+  + KA  +AI   V   + +P   ++D  G   PE      DLP     
Sbjct: 64  RIVWPWEIDEEGVAKAEFEAIRELVR--RAMPDEVILDKPGNYSPERLRRELDLPEGINL 121

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
            A  + D+    ++AASI+AK  RD ++R+   +Y + G     GYP+
Sbjct: 122 IAEERADAKYEVVSAASIVAKTYRDWIVRLLELEYGEVG----SGYPS 165


>gi|289810861|ref|ZP_06541490.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 66

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
           LIDG   PE LP  + AV+KGDS    I+AASI+AKVTRD  M      +P YGF  H G
Sbjct: 2   LIDGNRCPE-LPVPSMAVVKGDSRVAEISAASILAKVTRDAEMAALDIVFPQYGFAQHKG 60

Query: 179 YPTAKH 184
           YPTA H
Sbjct: 61  YPTAFH 66


>gi|239622462|ref|ZP_04665493.1| ribonuclease HII [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239514459|gb|EEQ54326.1| ribonuclease HII [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 279

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 125/277 (45%), Gaps = 89/277 (32%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAII------LDPNN--------- 52
           P  +LE  +  +    +AG DEVGRGALAGPV+V  AAI       LD ++         
Sbjct: 4   PTLDLERSLAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63

Query: 53  --IPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNI------------- 96
             +P G+ DSK ++  +RE +++++    A  ++  AS+  ID+  I             
Sbjct: 64  LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNAEIDEWGITYALGVAALRALS 123

Query: 97  ----------------HKATLDAIYHAVE----------------NLQVIPR-SALIDGR 123
                            KA+ ++    VE                +++ +P+ + ++DG 
Sbjct: 124 QVERELGLRLGGESTIKKASGESAGEIVEGRPGGSVGEFIGNCGGSVRALPKVAGILDGP 183

Query: 124 S----------------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM---RIA 164
           S                IP D+  +    +KGD    ++A A++IAKVTRDRLM     +
Sbjct: 184 SDYITKALNTFDAPDVPIPADITTK----VKGDQHCATVATAAVIAKVTRDRLMVDLAQS 239

Query: 165 HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           + +Y  Y +  + GY +A H+  I E GP+ +HR+++
Sbjct: 240 NPRYAAYEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 276


>gi|322690530|ref|YP_004220100.1| ribonuclease HII [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455386|dbj|BAJ66008.1| ribonuclease HII [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 279

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 125/277 (45%), Gaps = 89/277 (32%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAII------LDPNN--------- 52
           P  +LE  +  +    +AG DEVGRGALAGPV+V  AAI       LD ++         
Sbjct: 4   PTLDLERSLAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63

Query: 53  --IPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNI------------- 96
             +P G+ DSK ++  +RE +++++    A  ++  AS+  ID+  I             
Sbjct: 64  LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123

Query: 97  ----------------HKATLDAIYHAVE----------------NLQVIPR-SALIDGR 123
                            KA+ ++    VE                +++ +P+ + ++DG 
Sbjct: 124 QVERELGLRLRGESTIKKASGESAGKIVEGRPGGSVGESIGNCEGSVRALPKVAGILDGP 183

Query: 124 S----------------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM---RIA 164
           S                IP D+  +    +KGD    ++A A++IAKVTRDRLM     +
Sbjct: 184 SDYITKALNTFDAPDVPIPADITTK----VKGDQHCATVATAAVIAKVTRDRLMVDLAQS 239

Query: 165 HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           + +Y  Y +  + GY +A H+  I E GP+ +HR+++
Sbjct: 240 NPRYAAYEWAHNKGYGSAAHRTAIAEHGPTPLHRVSW 276


>gi|213691335|ref|YP_002321921.1| Ribonuclease H [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213522796|gb|ACJ51543.1| Ribonuclease H [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457405|dbj|BAJ68026.1| ribonuclease HII [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 279

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 125/277 (45%), Gaps = 89/277 (32%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAII------LDPNN--------- 52
           P  +LE  +  +    + G DEVGRGALAGPV+V  AAI       LD ++         
Sbjct: 4   PTLDLERSLAAQGYDLITGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63

Query: 53  --IPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNI------------- 96
             +P G+ DSK ++  +RE +++++    A  ++  AS+  ID+  I             
Sbjct: 64  LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123

Query: 97  ----------------HKATLDA----------------IYHAVENLQVIPRSA-LIDGR 123
                            KA++++                I +  E+++ +P+ A ++DG 
Sbjct: 124 QVERELGLRLGGRLAARKASMESAGEIVEGHPGDSVGESIGNCRESVRALPKVAGILDGP 183

Query: 124 S----------------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM-RIAHK 166
           S                IP D+  +    +KGD    ++A A++IAKVTRDRLM  +A  
Sbjct: 184 SDYITKALNTFDAPDVPIPADITTK----VKGDQHCATVATAAVIAKVTRDRLMVDLAQS 239

Query: 167 K--YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
              Y  Y +  + GY +A H+  I E GP+ +HR+++
Sbjct: 240 NPCYAAYEWAHNKGYGSAAHRTAIAEHGPTPLHRVSW 276


>gi|329571610|gb|EGG53291.1| ribonuclease HII [Enterococcus faecalis TX1467]
          Length = 103

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 67/101 (66%), Gaps = 2/101 (1%)

Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166
           A+++L   P   LID   +  D+P    ++IKGD+ S+SIAAASIIAKVTRDRLM    +
Sbjct: 4   AIDDLAFAPDYLLIDAMQL--DVPQPQESLIKGDARSISIAAASIIAKVTRDRLMEEYDE 61

Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
            YP YGF ++ GY T +H   +++ G + IHR TF P++++
Sbjct: 62  LYPGYGFKNNAGYGTKEHLLGLEKYGVTPIHRRTFAPIKDM 102


>gi|147920602|ref|YP_685601.1| ribonuclease H (RNase H) [uncultured methanogenic archaeon RC-I]
 gi|121688011|sp|Q0W5R8|RNH2_UNCMA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|110620997|emb|CAJ36275.1| ribonuclease H (RNase H) [uncultured methanogenic archaeon RC-I]
          Length = 224

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 25/182 (13%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI 75
           +K    + GIDE GRG + GP+VV  II++  ++P     G+ DSKK+S KKREE    +
Sbjct: 3   KKRTSTIMGIDEAGRGPVIGPLVVCGIIVEEKDLPAIEAMGLKDSKKLSAKKREEFAAAL 62

Query: 76  TSSAIISISSASHQYID-----KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--- 127
            +     +S    Q ID     + N+++  ++     + + +  P  A +D   +     
Sbjct: 63  KNKYKYELSVLPPQEIDARFESEDNLNRLEVNCFAGLIRSAK--PTIAYLDACDVNAERF 120

Query: 128 --------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
                   D   +  +  + DS    ++AASIIAKV RD L+R   +K    G D   GY
Sbjct: 121 GINIKKCLDFELEIVSAHEADSKYPIVSAASIIAKVHRDSLIREISEK---MGEDVGSGY 177

Query: 180 PT 181
           P 
Sbjct: 178 PA 179


>gi|13540964|ref|NP_110652.1| ribonuclease HII [Thermoplasma volcanium GSS1]
          Length = 219

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 26/201 (12%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAIISISS 85
            GIDE GRG + GP+V++ +      +   G+ DSK +S K+RE L++KIT +   S   
Sbjct: 14  CGIDEAGRGPVIGPMVISIVCCKEEYLREIGVKDSKMLSRKRREYLFDKITKNCAYSYVV 73

Query: 86  ASHQYIDK-------HNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFA 135
            S + ++K       + I +  +  +    E +  I    +I+ R+   I E    +   
Sbjct: 74  VSPETLNKDMASESLNKIEENYILELLSKAEGIVYIDCFDVIEERAEKYIREKSGKEVVC 133

Query: 136 VIKGDSISLSIAAASIIAKVTRDR-LMRIAHKKYPDYGFDSHVGYPT---------AKHQ 185
             K DSI  +++AASI++KV RDR + +IA K    YGF    GYP+            Q
Sbjct: 134 KHKADSIYPAVSAASIVSKVIRDREIDKIAEK----YGFFGS-GYPSDPRTIDFLRKAMQ 188

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
           Q +  +  + IH  T++ ++ 
Sbjct: 189 QGLDLRSVARIHWETYKKIKE 209


>gi|161528901|ref|YP_001582727.1| ribonuclease HII [Nitrosopumilus maritimus SCM1]
 gi|160340202|gb|ABX13289.1| ribonuclease HII [Nitrosopumilus maritimus SCM1]
          Length = 205

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 89/175 (50%), Gaps = 26/175 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-- 79
           + G+D+ GRG++ GP+V++ I ++  N+      G+ DSKK+S K RE LY++I      
Sbjct: 3   ICGVDDAGRGSMLGPLVISGISINKKNLRKLSSLGVKDSKKLSPKSRELLYKQIIELVDD 62

Query: 80  --IISISSAS-HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136
             I  I+  S    + KH +++  L+A Y A   L++ P ++ +D   +      +  + 
Sbjct: 63  YYIAKITPRSIDASVKKHGLNE--LEAKYMAKVVLKLDPDTSYVDSCDVNPKRFGKEISK 120

Query: 137 IK----------GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           +            DS  + ++AASIIAKVTRDR +    K Y     D   GYP+
Sbjct: 121 LSDNHKIKSYHHADSRFVVVSAASIIAKVTRDRAIEKLRKTY-----DLGSGYPS 170


>gi|159905682|ref|YP_001549344.1| ribonuclease HII [Methanococcus maripaludis C6]
 gi|238686969|sp|A9A9T9|RNH2_METM6 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|159887175|gb|ABX02112.1| ribonuclease HII [Methanococcus maripaludis C6]
          Length = 239

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 103/212 (48%), Gaps = 36/212 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           + G+DE GRG + GP+V+A++ ++  ++      G+ DSK++S KKREELY KI+    +
Sbjct: 20  IVGLDEAGRGPVIGPMVIASVKINEKDLYKLQDLGLKDSKQLSKKKREELYVKISEICNV 79

Query: 82  SISSASHQYIDKH----NIHKATLDAI----YHAVENLQVIPRSALIDGRSIPEDLPCQA 133
                + + ID+     N++K  L A      H ++  + I  S  ID  S  E      
Sbjct: 80  KKIVIAPEKIDEQMEITNLNKIELSAFSKLANHFIKENENI--SIYIDACSSNEQSFSNQ 137

Query: 134 F------------AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           F            A  K D     ++AASIIAKVTRD ++    K + + G     GYP+
Sbjct: 138 FKAKLINKNVEIIAEHKADENYKIVSAASIIAKVTRDNVIEEYKKTFGEIG----SGYPS 193

Query: 182 A-KHQQVIKE-----KGPSCIHRLTFRPLRNL 207
             K ++ +K+     KG   I R ++   +NL
Sbjct: 194 DPKTKKFLKKYVHENKGLPKIARKSWATSKNL 225


>gi|118431079|ref|NP_147280.2| ribonuclease HII [Aeropyrum pernix K1]
 gi|150421651|sp|Q9YET5|RNH2_AERPE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|116062405|dbj|BAA79461.2| ribonuclease HII [Aeropyrum pernix K1]
          Length = 225

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 95/207 (45%), Gaps = 29/207 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           V G+DE GRG+L G +VVA   ++   +      G+ DSK++S   R ELY +I+     
Sbjct: 4   VVGVDEAGRGSLVGDLVVAGFAVEEARLGELQSLGVRDSKQLSPAARVELYREISGVGFF 63

Query: 82  SISSASHQYIDKHNIH----KATLDAIYHAVENLQVIPRSALIDGRSIPEDL-------- 129
           ++ +     ID  NI+    KA  + +   V  L V P   ++D     + L        
Sbjct: 64  TVEAIRPWEIDGENINILVTKAVEEIVSRIVSYLGVHPSLVVVDKYGDVQGLRLALTRLG 123

Query: 130 --PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQ 186
             P       K DS    ++AASI+AKV RD  +++  + Y   G     GYP+  + ++
Sbjct: 124 IEPRSILVEEKADSRYPVVSAASIVAKVVRDARLQVLRRMYGVRGS----GYPSDPETRE 179

Query: 187 VIKE-----KGPSCIHRLTFRPLRNLS 208
            ++E     + P  I R T+  +R L 
Sbjct: 180 WVREVFARGEAPRVI-RYTWSTVRKLG 205


>gi|119872804|ref|YP_930811.1| ribonuclease HII [Pyrobaculum islandicum DSM 4184]
 gi|189043646|sp|A1RU36|RNH2_PYRIL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|119674212|gb|ABL88468.1| RNase HII [Pyrobaculum islandicum DSM 4184]
          Length = 195

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 38/207 (18%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSA----- 79
           + GIDE GRG + GP+V+AA+  D    +  G+ DSK +S  KRE +Y +I   A     
Sbjct: 2   ICGIDEAGRGPVVGPMVIAAVAGDGERLLQLGVRDSKTLSPTKREVIYARIIEVADCVNY 61

Query: 80  IISISSASHQYIDKHNIHKATLD----------AIYHAVENLQVIPRS-----ALIDGRS 124
           ++       +Y+ +  ++   LD          A  + V++  V  R      + I GR 
Sbjct: 62  VVVEPHIIDEYVRRRMLNSLELDFTARLIELCPAELYYVDSPDVNSRRYGDALSFITGRR 121

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AK 183
           +         A+  G+S+   +AAASI+AKV RDRL+ I  ++  D+G     GYP+  K
Sbjct: 122 V--------VALHGGESVP-QVAAASIVAKVIRDRLIDILKREIGDFGS----GYPSDVK 168

Query: 184 HQQVIK-EKGP-SCIHRLTFRPLRNLS 208
             + ++  K P  C+ R ++R LR L+
Sbjct: 169 TIEWLRLGKIPVECVRR-SWRTLRYLN 194


>gi|14324349|dbj|BAB59277.1| ribonuclease HII [Thermoplasma volcanium GSS1]
          Length = 218

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 26/201 (12%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAIISISS 85
            GIDE GRG + GP+V++ +      +   G+ DSK +S K+RE L++KIT +   S   
Sbjct: 13  CGIDEAGRGPVIGPMVISIVCCKEEYLREIGVKDSKMLSRKRREYLFDKITKNCAYSYVV 72

Query: 86  ASHQYIDK-------HNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFA 135
            S + ++K       + I +  +  +    E +  I    +I+ R+   I E    +   
Sbjct: 73  VSPETLNKDMASESLNKIEENYILELLSKAEGIVYIDCFDVIEERAEKYIREKSGKEVVC 132

Query: 136 VIKGDSISLSIAAASIIAKVTRDR-LMRIAHKKYPDYGFDSHVGYPT---------AKHQ 185
             K DSI  +++AASI++KV RDR + +IA K    YGF    GYP+            Q
Sbjct: 133 KHKADSIYPAVSAASIVSKVIRDREIDKIAEK----YGFFGS-GYPSDPRTIDFLRKAMQ 187

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
           Q +  +  + IH  T++ ++ 
Sbjct: 188 QGLDLRSVARIHWETYKKIKE 208


>gi|34395818|sp|Q97CG6|RNH2_THEVO RecName: Full=Ribonuclease HII; Short=RNase HII
          Length = 212

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 17/167 (10%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAIISISS 85
            GIDE GRG + GP+V++ +      +   G+ DSK +S K+RE L++KIT +   S   
Sbjct: 7   CGIDEAGRGPVIGPMVISIVCCKEEYLREIGVKDSKMLSRKRREYLFDKITKNCAYSYVV 66

Query: 86  ASHQYIDK-------HNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFA 135
            S + ++K       + I +  +  +    E +  I    +I+ R+   I E    +   
Sbjct: 67  VSPETLNKDMASESLNKIEENYILELLSKAEGIVYIDCFDVIEERAEKYIREKSGKEVVC 126

Query: 136 VIKGDSISLSIAAASIIAKVTRDR-LMRIAHKKYPDYGFDSHVGYPT 181
             K DSI  +++AASI++KV RDR + +IA K    YGF    GYP+
Sbjct: 127 KHKADSIYPAVSAASIVSKVIRDREIDKIAEK----YGFFGS-GYPS 168


>gi|317482036|ref|ZP_07941061.1| ribonuclease HII [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916603|gb|EFV38000.1| ribonuclease HII [Bifidobacterium sp. 12_1_47BFAA]
          Length = 279

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 124/277 (44%), Gaps = 89/277 (32%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAII------LDPNN--------- 52
           P  +LE  +  +    +AG DEVGRGALAGPV+V  AAI       LD ++         
Sbjct: 4   PTLDLERSLAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63

Query: 53  --IPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNI------------- 96
             +P G+ DSK ++  +RE +++++    A  ++  AS+  ID+  I             
Sbjct: 64  LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123

Query: 97  ----------------HKATLDAIYHAVE----------------NLQVIPR-SALIDGR 123
                            KA  ++    VE                +++ +P+ + ++DG 
Sbjct: 124 QVERELGLRLGGGLTAKKAAGESAGKIVEGRPGGSVGESIGNCEGSVRALPKVAGILDGP 183

Query: 124 S----------------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM---RIA 164
           S                IP D+  +    +KGD    ++A A++IAKVTRDRLM     +
Sbjct: 184 SDYITKALNTFDAPDVPIPADITTK----VKGDQHCATVATAAVIAKVTRDRLMVDLAQS 239

Query: 165 HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           + +Y  Y +  + GY +A H+  I E GP+ +HR+++
Sbjct: 240 NPRYAAYEWAHNKGYGSAAHRTAIAEHGPTPLHRVSW 276


>gi|227545838|ref|ZP_03975887.1| possible ribonuclease H [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|227213954|gb|EEI81793.1| possible ribonuclease H [Bifidobacterium longum subsp. infantis
           ATCC 55813]
          Length = 275

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 121/273 (44%), Gaps = 85/273 (31%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAII------LDPNN--------- 52
           P  +LE  +  +    + G DEVGRGALAGPV+V  AAI       LD ++         
Sbjct: 4   PTLDLERSLAAQGYDLITGFDEVGRGALAGPVMVGCAAIWACDLAPLDGDDSAELSGRTY 63

Query: 53  --IPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVE 109
             +P G+ DSK ++  +RE +++++    A  ++  AS+  ID+  I  A   A   A+ 
Sbjct: 64  LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123

Query: 110 -----------------------------------------NLQVIPR-SALIDGRS--- 124
                                                    +++ +P+ + ++DG S   
Sbjct: 124 QVERELGLRLGGGLTAKKAAGEIVEGRPGGSVGESIGNCGGSVRALPKVAGILDGPSDYI 183

Query: 125 -------------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM---RIAHKKY 168
                        IP D+  +    +KGD    ++A A++IAKVTRDRLM     ++ +Y
Sbjct: 184 TKALNTFDAPDVPIPADITTK----VKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRY 239

Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             Y +  + GY +A H+  I E GP+ +HR+++
Sbjct: 240 AAYEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 272


>gi|71747330|ref|XP_822720.1| ribonuclease HII [Trypanosoma brucei TREU927]
 gi|70832388|gb|EAN77892.1| ribonuclease HII, putative [Trypanosoma brucei]
          Length = 477

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 44/68 (64%)

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           +I+GD  SL+IAAAS +AKV+RD +M      YP Y F  + GYP   H + +K+ G S 
Sbjct: 392 IIEGDKRSLTIAAASCLAKVSRDEIMDYLDPLYPKYHFAENKGYPVDHHMRAVKKHGLSS 451

Query: 196 IHRLTFRP 203
           IHR ++RP
Sbjct: 452 IHRRSYRP 459



 Score = 42.0 bits (97), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 13/69 (18%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDP-----NNI--------PFGINDSKKISHKK 67
           K  +   G DE GRG LAGPVV AA+   P     N++         F I DSK +S  +
Sbjct: 128 KETFLTIGCDEAGRGPLAGPVVGAAVCRIPRSSFNNDLKALYDADEEFQIFDSKSVSETQ 187

Query: 68  REELYEKIT 76
           R+ +Y  IT
Sbjct: 188 RKVVYNNIT 196


>gi|261332495|emb|CBH15490.1| ribonuclease HII, putative [Trypanosoma brucei gambiense DAL972]
          Length = 477

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 44/68 (64%)

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           +I+GD  SL+IAAAS +AKV+RD +M      YP Y F  + GYP   H + +K+ G S 
Sbjct: 392 IIEGDKRSLTIAAASCLAKVSRDEIMDYLDPLYPKYHFAENKGYPVDHHMRAVKKHGLSS 451

Query: 196 IHRLTFRP 203
           IHR ++RP
Sbjct: 452 IHRRSYRP 459



 Score = 42.0 bits (97), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 13/69 (18%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDP-----NNI--------PFGINDSKKISHKK 67
           K  +   G DE GRG LAGPVV AA+   P     N++         F I DSK +S  +
Sbjct: 128 KETFLTIGCDEAGRGPLAGPVVGAAVCRIPRSSFNNDLKALYDADEEFQIFDSKSVSETQ 187

Query: 68  REELYEKIT 76
           R+ +Y  IT
Sbjct: 188 RKVVYNNIT 196


>gi|27382791|ref|NP_774320.1| ribonuclease HII [Bradyrhizobium japonicum USDA 110]
 gi|27355964|dbj|BAC52945.1| blr7680 [Bradyrhizobium japonicum USDA 110]
          Length = 111

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 59/107 (55%), Gaps = 7/107 (6%)

Query: 17  MVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           M+R E ++W      VAG+DE G   LAGPV   A+IL P     GI+DSKK+    REE
Sbjct: 1   MLRFETSLWESGHAAVAGVDEAGMSPLAGPVSAGAVILKPGTRIVGIDDSKKLDAAAREE 60

Query: 71  LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116
           L ++I   A    ++    + ID  NI+ A + A+  AV  L++ PR
Sbjct: 61  LAKEIKEKAESWCVAFVEVEEIDAINIYWAGIQAMQRAVRGLRLPPR 107


>gi|257076035|ref|ZP_05570396.1| ribonuclease HII [Ferroplasma acidarmanus fer1]
          Length = 205

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 22/170 (12%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITS---SAIIS 82
            GIDE GRG L GP+V+A +  D  ++   G+ DSKK+S  +RE L+ ++ S   + +I 
Sbjct: 4   CGIDEAGRGPLIGPMVMAILCGDRESLEIIGVADSKKLSPGRRESLFARLQSYKYNFVII 63

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS-----------IPEDLPC 131
             S   +Y++   ++   L+  Y A +     P S+ +   S           + E+   
Sbjct: 64  SPSEIDRYVEHQKLN--VLEETY-ASKLASWAPASSTVYVDSFDVNELRLQSLLMENTKR 120

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           Q     K D I   ++AASIIAKV RDR +   HK Y D+G     GYP+
Sbjct: 121 QIVCRHKADEIYPCVSAASIIAKVIRDREIDKLHKDYGDFG----SGYPS 166


>gi|322828022|gb|EFZ31977.1| ribonuclease HII, putative [Trypanosoma cruzi]
          Length = 479

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 11/101 (10%)

Query: 113 VIPRSALIDGRSIPEDLPCQAFA----------VIKGDSISLSIAAASIIAKVTRDRLMR 162
           V P   L+DG + PE+     F           +I+GD  SL+IAAAS +AKV RD +M 
Sbjct: 360 VQPPLILVDGHAAPEET-ISFFTEIQTGGCVQPIIEGDKRSLTIAAASCLAKVARDEIMN 418

Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
                YP Y F  + GYP   H + ++  G S IHR +++P
Sbjct: 419 YVSTLYPKYQFAENKGYPVEYHMRAVQRYGVSSIHRKSYKP 459



 Score = 41.2 bits (95), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 17/96 (17%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDP----NN---------IPFGINDSKKISHKK 67
           K  +   G DE GRG LAGPVV AA+   P    NN           F I DSK +S  +
Sbjct: 128 KETYLTIGCDEAGRGPLAGPVVGAAVCRIPLSSFNNELCAVYDASEEFQIFDSKSLSEGQ 187

Query: 68  REELYEKITSSAIISISSASHQYIDKHNIHKATLDA 103
           R  +++ IT    +    A   ++    +H A+ DA
Sbjct: 188 RNVVFQNITGYEKLFHLVADKAFV----VHHASGDA 219


>gi|46190774|ref|ZP_00121089.2| COG0164: Ribonuclease HII [Bifidobacterium longum DJO10A]
 gi|189439885|ref|YP_001954966.1| ribonuclease HII [Bifidobacterium longum DJO10A]
 gi|189428320|gb|ACD98468.1| Ribonuclease HII [Bifidobacterium longum DJO10A]
          Length = 279

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 124/277 (44%), Gaps = 89/277 (32%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAII------LDPNN--------- 52
           P  +LE  +  +    + G DEVGRGALAGPV+V  AAI       LD ++         
Sbjct: 4   PTLDLERSLAAQGYDLITGFDEVGRGALAGPVMVGCAAIWACDLAPLDGDDSAELSGRTY 63

Query: 53  --IPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNI------------- 96
             +P G+ DSK ++  +RE +++++    A  ++  AS+  ID+  I             
Sbjct: 64  LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123

Query: 97  ----------------HKATLDAIYHAVE----------------NLQVIPR-SALIDGR 123
                            KA+ ++    VE                +++ +P+ + ++DG 
Sbjct: 124 QVERELGLRLGGESTIKKASGESAGKIVEGRPGGSVGESIGNCEGSVRALPKVAGILDGP 183

Query: 124 S----------------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM---RIA 164
           S                IP D+  +    +KGD    ++A A++IAKVTRDRLM     +
Sbjct: 184 SDYITKALNTFDAPDVPIPADITTK----VKGDQHCATVATAAVIAKVTRDRLMVDLAQS 239

Query: 165 HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           + +Y  Y +  + GY +A H+  I E GP+ +HR+++
Sbjct: 240 NPRYAAYEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 276


>gi|71415356|ref|XP_809747.1| ribonuclease HII [Trypanosoma cruzi strain CL Brener]
 gi|70874177|gb|EAN87896.1| ribonuclease HII, putative [Trypanosoma cruzi]
          Length = 479

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 11/101 (10%)

Query: 113 VIPRSALIDGRSIPEDLPCQAFA----------VIKGDSISLSIAAASIIAKVTRDRLMR 162
           V P   L+DG + PE+     F           +I+GD  SL+IAAAS +AKV RD +M 
Sbjct: 360 VQPPLILVDGHAAPEET-ISFFTEIQTGGCVQPIIEGDKRSLTIAAASCLAKVARDEIMN 418

Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
                YP Y F  + GYP   H + ++  G S IHR +++P
Sbjct: 419 YVSTLYPKYQFAENKGYPVEYHMRAVQRYGVSSIHRKSYKP 459



 Score = 41.2 bits (95), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 17/96 (17%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDP----NN---------IPFGINDSKKISHKK 67
           K  +   G DE GRG LAGPVV AA+   P    NN           F I DSK +S  +
Sbjct: 128 KETYLTIGCDEAGRGPLAGPVVGAAVCRIPLSSFNNELCAVYDTREEFQIFDSKSLSEGQ 187

Query: 68  REELYEKITSSAIISISSASHQYIDKHNIHKATLDA 103
           R  +++ IT    +    A   ++    +H A+ DA
Sbjct: 188 RNVVFQNITGYEKLFHLVADKAFV----VHHASGDA 219


>gi|71406256|ref|XP_805682.1| ribonuclease HII [Trypanosoma cruzi strain CL Brener]
 gi|70869181|gb|EAN83831.1| ribonuclease HII, putative [Trypanosoma cruzi]
          Length = 479

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 11/101 (10%)

Query: 113 VIPRSALIDGRSIPEDLPCQAFA----------VIKGDSISLSIAAASIIAKVTRDRLMR 162
           V P   L+DG + PE+     F           +I+GD  SL+IAAAS +AKV RD +M 
Sbjct: 360 VQPPLILVDGHAAPEET-ISFFTEIQTGGCVQPIIEGDKRSLTIAAASCLAKVARDEIMN 418

Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
                YP Y F  + GYP   H + ++  G S IHR +++P
Sbjct: 419 YVSTLYPKYQFAENKGYPVEYHMRAVQRYGVSSIHRKSYKP 459



 Score = 41.2 bits (95), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 17/96 (17%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDP----NN---------IPFGINDSKKISHKK 67
           K  +   G DE GRG LAGPVV AA+   P    NN           F I DSK +S  +
Sbjct: 128 KETYLTIGCDEAGRGPLAGPVVGAAVCRIPLSSFNNELCAVYDAREEFQIFDSKSLSEGQ 187

Query: 68  REELYEKITSSAIISISSASHQYIDKHNIHKATLDA 103
           R  +++ IT    +    A   ++    +H A+ DA
Sbjct: 188 RNVVFQNITGYEKLFHLVADKAFV----VHHASGDA 219


>gi|291333356|gb|ADD93062.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S05-C10]
          Length = 830

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 90/181 (49%), Gaps = 28/181 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI- 80
           + G DE GRG + GP+VVAA+ +   +    I  G++DSK +S KKREEL + I      
Sbjct: 4   IVGADEAGRGPVLGPLVVAAVAIPATDLQRLIDLGVDDSKALSPKKREELNQIIHQEPTW 63

Query: 81  -ISISSASHQYID----KHNIHKATLDAIYHAVENLQVIPRSALI----------DGRSI 125
            +SI   S + ID    K  ++   +D    A+++L+V     LI           GR++
Sbjct: 64  QVSIIECSPERIDVTMEKKTLNDLEVDLFGEAIDSLEVERIEELILDACDTNEARFGRNV 123

Query: 126 PEDLPCQAF--AVIK---GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
              +        VI     D+ +  + AASI+AKV RD++++   K   D GF+   GYP
Sbjct: 124 ASKISSGKIVETVISKHGADAENPVVGAASIVAKVHRDKVIQSIAK---DRGFNVGSGYP 180

Query: 181 T 181
           +
Sbjct: 181 S 181


>gi|288931994|ref|YP_003436054.1| ribonuclease HII [Ferroglobus placidus DSM 10642]
 gi|288894242|gb|ADC65779.1| ribonuclease HII [Ferroglobus placidus DSM 10642]
          Length = 211

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 95/201 (47%), Gaps = 23/201 (11%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---- 77
           +AGIDE G+G + GP+VV  +  +  ++      G+ DSK++S +KR+EL EK+      
Sbjct: 3   IAGIDEAGKGPVIGPLVVCGVSCEEKDVEALKKLGVKDSKRLSPEKRKELAEKLKEIVEH 62

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-PEDLPCQAFAV 136
             I+      +  ++K  I++   +A    +  L   P    +D   + PE L  +    
Sbjct: 63  ETIVISPEELNSKMEKTTINEILKEACVEIISKLN--PDVVFVDSFDVKPERLE-EELKR 119

Query: 137 IKGDSI--------SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK--HQQ 186
           + G  +         + +AAASIIAK  RD ++    ++Y D+G        T +   +Q
Sbjct: 120 LTGKKVVAMHEGEREVVVAAASIIAKCLRDEIIEELKREYGDFGSGYASDEKTRRWLEEQ 179

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
           + + K P  I R  ++ + NL
Sbjct: 180 IKRGKIPE-IVRKRWKTVENL 199


>gi|45358937|ref|NP_988494.1| ribonuclease HII [Methanococcus maripaludis S2]
 gi|73917612|sp|Q6LXH7|RNH2_METMP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|45047803|emb|CAF30930.1| Ribonuclease HII [Methanococcus maripaludis S2]
          Length = 242

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 84/181 (46%), Gaps = 32/181 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           + G+DE GRG + GP+V+A++ +D  N+       + DSK++S KKREELY  I     +
Sbjct: 23  IVGLDEAGRGPVLGPMVIASVKIDEKNLYKLNDLELKDSKQLSKKKREELYIIINEMCDV 82

Query: 82  SISSASHQYIDKH----NIHKATLDAI-----YHAVENLQVIPRSALIDGRSIPEDLPCQ 132
                  + IDK     N++K  L A      +   EN  +   S  ID  S  E     
Sbjct: 83  EKIVIDPETIDKQMEIINLNKIELSAFSKLSNHFIRENDNI---SIYIDACSSSEQSFSN 139

Query: 133 AF------------AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
            F            A  K D     ++AASIIAKVTRDR++    + + + G     GYP
Sbjct: 140 QFKAKLINKNVEIIAEHKADENYKIVSAASIIAKVTRDRVIEEYKETFGEIG----SGYP 195

Query: 181 T 181
           +
Sbjct: 196 S 196


>gi|224001680|ref|XP_002290512.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973934|gb|EED92264.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 249

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 35/188 (18%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREELYEKITSSAIISI 83
           + GIDE GRG + GP+  AA    P   +IP G NDSK++S +KR  L+++I  S  I  
Sbjct: 1   ILGIDEAGRGPVLGPMTYAAAYWSPTATDIPEGFNDSKQLSAEKRASLFDEIKRSDSIGF 60

Query: 84  -------SSASHQYI--DKHNI----HKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
                  S  S   +  + +N+    H A ++ I+ AV +  V   +A ID   +P+   
Sbjct: 61  VLRVLHASEISRNMLRSEPYNLNAMSHDAAMEMIW-AVLDSGVKIETAYIDTVGMPDAYR 119

Query: 131 CQAFAVIKGDSISLSI-----------AAASIIAKVTRDRLMRIAHKKY------PDYGF 173
            +   V +G +I   +           +AAS++AK +RD L  IA+ K+      P  G 
Sbjct: 120 SKLERVFQGHNIEFIVEKKADAKYAPCSAASVVAKESRDTL--IANWKWTETSYEPKDGR 177

Query: 174 DSHVGYPT 181
           +   GYP+
Sbjct: 178 NFGSGYPS 185


>gi|170289973|ref|YP_001736789.1| ribonuclease HII [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174053|gb|ACB07106.1| ribonuclease HII [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 217

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 26/174 (14%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA---I 80
           GIDE GRG + GP+VVAA+IL           G+ DSK +S ++REEL+  I  SA   +
Sbjct: 2   GIDEAGRGPVIGPMVVAAVILKRREAKRLKEMGVTDSKLLSAERREELFPMIIESAESYL 61

Query: 81  ISISSASH--QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG------------RSIP 126
           I +       + + K+ ++    + +   +  L+  P   ++D             R   
Sbjct: 62  IKVIEPKRIDEAVSKNMLNLLEAEVMSELIRELR--PARVIVDSPMRNCRKFSDVLREFL 119

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
            D   +  A  K DS  + +A+ASIIAKV RDR +R   +     G +   GYP
Sbjct: 120 GDSSVKIIAENKADSKYIQVASASIIAKVERDRRIRELSEL---TGVEIGSGYP 170


>gi|84490178|ref|YP_448410.1| ribonuclease HII [Methanosphaera stadtmanae DSM 3091]
 gi|115305551|sp|Q2NEI6|RNH2_METST RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|84373497|gb|ABC57767.1| RnhB [Methanosphaera stadtmanae DSM 3091]
          Length = 212

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 29/206 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG++ GP+V+  +++    I F    G+ DSK+++ KKR  +  KI   A  
Sbjct: 9   ILGIDEAGRGSVIGPLVIGGVLMKKKKIRFLNRIGVKDSKQLNMKKRTIISRKIKKIAQF 68

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVI-----PRSALIDGRSIPEDLPCQAFAV 136
                    ID+   +   L+ I    E ++ I     P +  ID   + E+        
Sbjct: 69  KTIIIPAHTIDEKRNNDINLNEI--ETEGMEEIIKIMKPNACYIDCIDVRENRFHDKIQK 126

Query: 137 I----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ- 185
           I          K D     ++AASIIAKV RD+ + I  ++Y   G     GYP+ K+  
Sbjct: 127 INPNMTVVTEHKADETYKIVSAASIIAKVERDKQLEIIRQEYGSVGS----GYPSDKNTI 182

Query: 186 ---QVIKEKGPSCIHRLTFRPLRNLS 208
              + IK      I R T++ + N++
Sbjct: 183 NYLKTIKNNQFPPIIRKTWKTIENIT 208


>gi|269977901|ref|ZP_06184855.1| ribonuclease HII [Mobiluncus mulieris 28-1]
 gi|269933867|gb|EEZ90447.1| ribonuclease HII [Mobiluncus mulieris 28-1]
          Length = 278

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 8/105 (7%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI- 80
           V G+DEVGRGALAGPV +   ++    +    P G+NDSK ++ ++RE L + I S    
Sbjct: 37  VGGMDEVGRGALAGPVCIGVTVVSATELAAGFPPGLNDSKALTARRREALVQPIQSWVKD 96

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQV---IPRSALIDG 122
            +I  A++  ID+  I  A   A + A+  L     +P+  L+DG
Sbjct: 97  FAIGEATNMEIDEMGIMAAMRLAGWRALNQLDARGHLPQKLLLDG 141



 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           ++K D  + ++A A+++AKV RD  M  +  + P YG+  +VGY T  H++ I   GPS 
Sbjct: 212 LVKADQHAATVAGAAVLAKVYRDAFM--SRLEDPGYGWSHNVGYGTKAHREAISRLGPSR 269

Query: 196 IHRLTFR 202
            HR T++
Sbjct: 270 WHRHTWK 276


>gi|327401115|ref|YP_004341954.1| ribonuclease HII [Archaeoglobus veneficus SNP6]
 gi|327316623|gb|AEA47239.1| ribonuclease HII [Archaeoglobus veneficus SNP6]
          Length = 212

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 22/179 (12%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS 78
           M  VAGIDE G+G + GP+VV  +      +      G+ DSK++S K+REEL  +I   
Sbjct: 1   MVRVAGIDEAGKGPVIGPMVVCGVCCSEEELVELEKIGVRDSKRLSPKRREELAREIKKL 60

Query: 79  AIISISSASHQYID----KHNIHKATLDAIYHAVENLQVIPRSALIDGRS-IPEDLP--- 130
           + + +     + +D    K  I++   D     +  L   P    +D    IPE L    
Sbjct: 61  SNVYVIKLEPEKLDRLMEKKTINEILTDCYAEIINELN--PDLTFVDSPDVIPERLSEAL 118

Query: 131 -----CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
                 +  A+ + D +   ++AASI+AKV RDR +    K   + G D   GY + K 
Sbjct: 119 KKRTGKEVKAMHRADVLKPVVSAASIVAKVERDREIEKIKK---ELGVDFGSGYASDKR 174


>gi|530464|emb|CAA83799.1| ribonuclease HII [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 114

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 66/114 (57%), Gaps = 1/114 (0%)

Query: 39  GPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIH 97
           GP+VVA++IL P+     I DSKK++ K R+ L+++I ++ +   I   S + +D+ N  
Sbjct: 1   GPLVVASVILKPDYFNPLIKDSKKLNPKTRQVLFDEIINNCLDYQIMIISSKQVDELNPL 60

Query: 98  KATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASI 151
           +A+L      + NL++ P  ALIDG         +  ++IKGD  + SIA +SI
Sbjct: 61  QASLLGFKTTISNLKIXPDLALIDGNQNINLENIKTLSIIKGDDNNFSIACSSI 114


>gi|268559996|ref|XP_002637939.1| C. briggsae CBR-RNH-2 protein [Caenorhabditis briggsae]
 gi|187035517|emb|CAP25398.1| CBR-RNH-2 protein [Caenorhabditis briggsae AF16]
          Length = 297

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 89/189 (47%), Gaps = 36/189 (19%)

Query: 26  VAGIDEVGRGALAGPVVVAAII--LDPNN--IPFGINDSKKISHKKREELYEKITSSAII 81
           V GIDE GRG + GP+V AA I  +D N      G++DSK ++  KREE++EKI +   I
Sbjct: 23  VLGIDEAGRGPVLGPMVYAAAISPMDQNAELKALGVDDSKALNEAKREEIFEKINNDEEI 82

Query: 82  ------SISSASHQYIDKHNI--HKATLDAIYHAVE----------NLQVIPRSALIDG- 122
                 +I S S + I    +  HK +L+ + H             N+ V+       G 
Sbjct: 83  QQIVAYAIRSLSPELISSSMLKRHKYSLNEVSHDAAIALIRDAFACNVNVVEIKVDTVGP 142

Query: 123 -----RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRD-RLMRIAHK----KYPDY 171
                  +    P  +  V  K DS+   ++AASI AKVTRD RL     K    K P+ 
Sbjct: 143 KATYQAKLERLFPGISICVTEKADSLFPIVSAASIAAKVTRDTRLRNWEFKEENIKVPEN 202

Query: 172 GFDSHVGYP 180
           GF S  GYP
Sbjct: 203 GFGS--GYP 209


>gi|297517117|ref|ZP_06935503.1| ribonuclease HII [Escherichia coli OP50]
          Length = 69

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%)

Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
          VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L E+I   A+
Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKAL 66


>gi|313609082|gb|EFR84793.1| ribonuclease HII [Listeria monocytogenes FSL F2-208]
          Length = 110

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 65/100 (65%), Gaps = 2/100 (2%)

Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166
           A++ LQ  P   LID  ++P        ++IKGD+ S+SIAAASIIAKVTRDRLM++  +
Sbjct: 4   ALDQLQPEPDFVLID--AMPLKYTEAELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDE 61

Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
            YP Y F +++GY T KH   +   G   IHR++F P+++
Sbjct: 62  TYPGYDFANNMGYGTKKHLHGLDTIGICPIHRISFAPVKD 101


>gi|292656107|ref|YP_003536004.1| ribonuclease H II [Haloferax volcanii DS2]
 gi|291372875|gb|ADE05102.1| ribonuclease H II [Haloferax volcanii DS2]
          Length = 215

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 22/172 (12%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA- 86
           G+DE G+G + GP+V AA+  DP+ +P GI DSK+++ ++REEL  ++     IS+  A 
Sbjct: 4   GVDEAGKGPVLGPMVAAAVRGDPDALPDGIADSKRLAPERREELAAELRERDDISVGVAF 63

Query: 87  -SHQYID--KHNIHKATLDAIYHAVENLQVIPRSALID---------GRSIPEDLPCQAF 134
              + ID  + +++  T+ A   A   + V     + D         GR + E L     
Sbjct: 64  VEPETIDDPETDMNLLTVRAQVEAAAEVAVDADELVCDAGDVSESRFGRRVREGLAEAGV 123

Query: 135 AVI-----KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           +V      + D     + AASI+AKV RDR +     +Y + G     GYP+
Sbjct: 124 SVAVRAQHRADDEHAIVGAASIVAKVERDRRVEAIADEYGEVGS----GYPS 171


>gi|76801839|ref|YP_326847.1| ribonuclease HII [Natronomonas pharaonis DSM 2160]
 gi|115305552|sp|Q3IRF6|RNH2_NATPD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|76557704|emb|CAI49287.1| ribonuclease H II [Natronomonas pharaonis DSM 2160]
          Length = 212

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 95/199 (47%), Gaps = 32/199 (16%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82
           M P+ G+DE G+G + G + VAA+      +P GI+DSK+++  +RE L +++  +  I 
Sbjct: 1   MTPLVGVDEAGKGPVVGSMFVAAVRAPTEALPDGIDDSKRLTDDRREALADRLRDADRID 60

Query: 83  ISSASHQ--YIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA--VIK 138
           ++    Q   ID  N++  T+ A   A++ +     + L D      D+    FA  V  
Sbjct: 61  VAVVECQPADIDDANMNDLTVAAHAAALDGVAASGETVLCDAG----DVDAGRFADRVAA 116

Query: 139 GDSISLSIA-------------AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT---- 181
             ++ +S+A             AASIIAK  R+R +    ++Y   G     GYP+    
Sbjct: 117 AATLDVSVAAEHGADGSDDLVGAASIIAKSARERHVEQLSEQYGAVG----SGYPSDPTT 172

Query: 182 -AKHQQVIKEKG--PSCIH 197
            A  ++  +++G  P C+ 
Sbjct: 173 KAFLREAFEQEGGFPPCVR 191


>gi|324575207|gb|ADY49933.1| Ribonuclease HII [Ascaris suum]
          Length = 60

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 38/58 (65%)

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           ++I  ASI+AKV RD+ M    KKYP YG++ H GY T  H   I++ GPS  HRLT+
Sbjct: 1   MAIKLASIVAKVRRDKYMARLAKKYPHYGYEIHKGYGTKAHMAAIRKHGPSAAHRLTY 58


>gi|305663629|ref|YP_003859917.1| ribonuclease HII [Ignisphaera aggregans DSM 17230]
 gi|304378198|gb|ADM28037.1| ribonuclease HII [Ignisphaera aggregans DSM 17230]
          Length = 232

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 25/179 (13%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKIT-SSAI 80
           + GIDE GRG L G + +A I+++ + + +    G+ DSK++S +KR + +  I  +S +
Sbjct: 5   ICGIDEAGRGPLIGDMFIAMIVINTDALKYLENIGVRDSKRLSREKRIKFFPIIIENSEL 64

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAV-ENLQVI-------------PRSAL--IDGRS 124
           + IS  +   +D+ NI+K  L+ +   + +++ ++             P   L  I+   
Sbjct: 65  VLISRLTPSQLDEENINKLELNTVCRLIKKSISIVSTISEIYIDAFANPNKLLHYINSNC 124

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           I  +     +     D+  + + AASI+AKV RD  +    K Y D+G     GYP+ K
Sbjct: 125 IASNRSINVYIEHGADNKYVVVGAASIVAKVLRDTHIDNLKKVYGDFG----SGYPSDK 179


>gi|269955973|ref|YP_003325762.1| Ribonuclease H [Xylanimonas cellulosilytica DSM 15894]
 gi|269304654|gb|ACZ30204.1| Ribonuclease H [Xylanimonas cellulosilytica DSM 15894]
          Length = 272

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 96/202 (47%), Gaps = 27/202 (13%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
           VAG+DEVGRGALAGPV V  +++D      P G+ DSK ++   RE L  ++    +  +
Sbjct: 34  VAGMDEVGRGALAGPVSVGVVVVDAATRTAPKGVADSKLLTPAAREALVPQLQRWPVAWA 93

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVI------------------PRSAL----- 119
           +  A    ID H I  A   A   A+  ++ +                  P++ L     
Sbjct: 94  VGHAGPAEIDAHGIIAALRIAGRRALSQVRRVCGDVDLVLLDGSHDWLTRPQADLFEAVE 153

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           +D    PE  P     ++K D    S+AAAS++AKV RD L+    ++YP Y +D + GY
Sbjct: 154 LDVAGAPETDPT-VRTLVKADLQCASVAAASVLAKVERDLLLTRLARQYPAYAWDQNKGY 212

Query: 180 PTAKHQQVIKEKGPSCIHRLTF 201
               H   ++  G +  HR ++
Sbjct: 213 SAPAHLDALRLHGTTPQHRRSW 234


>gi|327311983|ref|YP_004338880.1| ribonuclease HII [Thermoproteus uzoniensis 768-20]
 gi|326948462|gb|AEA13568.1| ribonuclease HII [Thermoproteus uzoniensis 768-20]
          Length = 203

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 85/177 (48%), Gaps = 34/177 (19%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSA----- 79
           VAGIDE GRG + GP+V+A +  +   +   G+ DSK++S K RE LY  I  SA     
Sbjct: 3   VAGIDEAGRGPVVGPMVLAIVAGNEKALRALGVRDSKELSRKARERLYPLILKSAECVNY 62

Query: 80  ------IISISSASHQYIDKHNIHKATL----DAIYHAVENLQVIPRS-----ALIDGRS 124
                 +I   +ASH+         A L    DA  + V++    P       + + GR 
Sbjct: 63  VVLEPHVIDEWAASHKLNLLEAEEAAKLMRLCDADVYYVDSPDPKPERFSELLSRMSGRR 122

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           +         A+ K + +   +AAASI+AKV RDRL+ +   +  D+G     GYP+
Sbjct: 123 V--------VAMNKAERVP-QVAAASIVAKVVRDRLVDMLRSEMGDFGS----GYPS 166


>gi|328462264|gb|EGF34369.1| ribonuclease HII [Lactobacillus rhamnosus MTCC 5462]
          Length = 93

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 2/69 (2%)

Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
          VAG+DEVGRG LAGPVV AA+IL P+   + +NDSK+++  +R+ LY  I + AI + I 
Sbjct: 7  VAGLDEVGRGPLAGPVVTAAVIL-PHQFKWPVNDSKQLTAHERDVLYPHILTEAIAVGIG 65

Query: 85 SASHQYIDK 93
           A +  ID+
Sbjct: 66 VADNHEIDR 74


>gi|124027720|ref|YP_001013040.1| ribonuclease HII [Hyperthermus butylicus DSM 5456]
 gi|189043606|sp|A2BL34|RNH2_HYPBU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|123978414|gb|ABM80695.1| ribonuclease HII [Hyperthermus butylicus DSM 5456]
          Length = 240

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 20/170 (11%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS----SA 79
           GIDE GRG + GP+VV  + +  N+I      G+ DSK+++   R +LY +I      S 
Sbjct: 11  GIDEAGRGPVIGPMVVVGVAVCSNDIDKLVALGVRDSKQLTPVVRAKLYGEILRVALHSV 70

Query: 80  IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC-------- 131
           I+ +  A    ++ + +   T + I   +  +   P +  +D    PE L          
Sbjct: 71  IVKLPPALLDAVNLNQLEVETFEYIASRIAGVHDSPEAVYVDAVGSPEKLAARLSGRLGV 130

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           +  A    D     ++AASI+AKV RD  +R+  + Y   G     GYPT
Sbjct: 131 RVIAEPGADKTYPIVSAASIVAKVVRDAEIRMLRRLYGVRGS----GYPT 176


>gi|261886381|ref|ZP_06010420.1| ribonuclease HII [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 102

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 43/67 (64%)

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            ++K DS    ++AASIIAKV+RDR MR   K YPD+G+  H GY    H + +K+ G +
Sbjct: 26  TIVKADSSVPQVSAASIIAKVSRDRQMRRFDKIYPDFGYAKHKGYGVKAHIEALKQHGSN 85

Query: 195 CIHRLTF 201
            + RL+F
Sbjct: 86  ELTRLSF 92


>gi|219111921|ref|XP_002177712.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217410597|gb|EEC50526.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 393

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 35/187 (18%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA--- 79
           V GIDE GRG++ GP+V  A   +P   + IP   NDSK++S  KR  L  KI       
Sbjct: 113 VVGIDEAGRGSILGPMVYGAAFWNPCDEDRIPNDFNDSKQLSEDKRAMLLHKIMYDTPEM 172

Query: 80  -----IISISSASHQYI--DKHNIHKATLDAIYHAVENL---QVIPRSALIDG------- 122
                ++  S  S   +  + +N+++ + DA    +E+L    V   +  ID        
Sbjct: 173 GFAVRVLHASEISRNMLRTESYNLNQMSHDAAAGIIEHLLEAGVQIGACFIDTVGNADHY 232

Query: 123 -RSIPEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLM------RIAHKKYPDYGFD 174
            R + ++ P   F V  K D+     +A S++AK  RDR+M       ++ K+ P +G  
Sbjct: 233 KRRLQQEFPGIDFTVESKADAKYPPCSAGSVVAKNVRDRMMESFQYSEMSLKRDPKFG-- 290

Query: 175 SHVGYPT 181
              GYP+
Sbjct: 291 --SGYPS 295


>gi|126459394|ref|YP_001055672.1| ribonuclease HII [Pyrobaculum calidifontis JCM 11548]
 gi|126249115|gb|ABO08206.1| RNase HII [Pyrobaculum calidifontis JCM 11548]
          Length = 207

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 24/172 (13%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAIISIS 84
           + G+DE GRG L GP+V+A ++ D +  +  G+ DSK +S   RE ++ ++   A     
Sbjct: 16  IGGVDEAGRGPLVGPLVIAVVVGDSDVLLGVGVRDSKALSPGARERVFARVLEVA----E 71

Query: 85  SASHQYIDKHNIHKATLDAIYHAVE------NLQVIPRSA-LIDGRSIPEDLPCQAFAVI 137
             ++  ++ H +   T   + +A+E       L   P     +D   +  +    A ++ 
Sbjct: 72  CVNYIVVEPHIVDMYTSKGLLNALEIDYTAKLLATCPADVYYVDSPDVKPERYGSALSMA 131

Query: 138 KGDSISL--------SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
            G  I           +AAASI+AKV RDRL+ +  ++  D+G     GYP+
Sbjct: 132 TGKRIVALNKGERVPQVAAASIVAKVVRDRLIDLLKREVGDFGS----GYPS 179


>gi|119719808|ref|YP_920303.1| ribonuclease HII [Thermofilum pendens Hrk 5]
 gi|189043673|sp|A1RYM0|RNH2_THEPD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|119524928|gb|ABL78300.1| RNase HII [Thermofilum pendens Hrk 5]
          Length = 213

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 39/189 (20%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS 78
           M  VAGIDE GRG + GP+VVA ++     +P     G+ DSK +S ++R      + S 
Sbjct: 1   MGRVAGIDEAGRGPMLGPMVVAIVVCPEEKVPLLRNMGVRDSKALSPRRR-----LLLSR 55

Query: 79  AIISIS-SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG--------------- 122
           AI S+  S   + ++   I  A     Y  + +L+    + LI+                
Sbjct: 56  AIPSVGCSVKVRVVEPQEIDCAVRGECYENLNHLEAAVFAQLINEVLSEGELEVVYMDSP 115

Query: 123 RSIPEDLPCQAFAVIKG----------DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172
             +P     +  A++KG          D     + AASI+AK TRD ++    K Y D+G
Sbjct: 116 DPVPSRFEERVRALLKGQVRIVAENGADEKYTIVGAASIVAKETRDEIINALKKTYGDFG 175

Query: 173 FDSHVGYPT 181
                GYP+
Sbjct: 176 S----GYPS 180


>gi|5825611|gb|AAD53318.1|AF179372_1 ribonuclease HII [Trypanosoma brucei rhodesiense]
          Length = 377

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 136 VIKGDSISLSI-AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
           +I+GD  SL+I AAAS +AKV+RD +M      YP Y F  + GYP   H + +K+ G S
Sbjct: 291 IIEGDKRSLTIIAAASCLAKVSRDEIMDYLDPLYPKYHFAENKGYPVDHHMRAVKKHGLS 350

Query: 195 CIHRLTFRP 203
            IHR ++RP
Sbjct: 351 SIHRRSYRP 359



 Score = 42.0 bits (97), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 13/69 (18%)

Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDP-----NNI--------PFGINDSKKISHKK 67
          K  +   G DE GRG LAGPVV AA+   P     N++         F I DSK +S  +
Sbjct: 27 KETFLTIGCDEAGRGPLAGPVVGAAVCRIPRSSFNNDLKALYDADEEFQIFDSKSVSETQ 86

Query: 68 REELYEKIT 76
          R+ +Y  IT
Sbjct: 87 RKVVYNNIT 95


>gi|257387378|ref|YP_003177151.1| ribonuclease HII [Halomicrobium mukohataei DSM 12286]
 gi|257169685|gb|ACV47444.1| ribonuclease HII [Halomicrobium mukohataei DSM 12286]
          Length = 210

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 19/168 (11%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87
           G+DE G+G + G +  AA+  DP ++P G+ DSK I  ++RE L E I S A + ++  +
Sbjct: 4   GVDEAGKGPVLGSMFAAAVRCDPGDLPDGVGDSKGIPDERRERLAEAIRSVAAVGLAEIT 63

Query: 88  HQYIDKHNIHKATLDAIYHAVENLQVIPR---SALID---------GRSIPE--DLPCQA 133
            + ID       TL    HA E L  +     S L+D         GR + +  D     
Sbjct: 64  PERIDDPETDMNTLTVAAHA-EALSAVATDGLSGLVDAGDTDAERFGRRVADRVDSEIDL 122

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
            +    D     + AASI+AK  R+  +     ++   G     GYP+
Sbjct: 123 GSAHGADETDPLVGAASIVAKSAREAHVAALADEFGAVG----SGYPS 166


>gi|118575753|ref|YP_875496.1| ribonuclease HII [Cenarchaeum symbiosum A]
 gi|189043576|sp|A0RV25|RNH2_CENSY RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|118194274|gb|ABK77192.1| ribonuclease HII [Cenarchaeum symbiosum A]
          Length = 205

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 27/178 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-- 79
           V G+DE GRG+L GP+V+A + +  N +      G+ DSKK++ K RE LY +I + A  
Sbjct: 3   VCGVDEAGRGSLVGPLVIAGVAIKRNRMRELKSMGVRDSKKLTRKARESLYPEIVNMADS 62

Query: 80  ---------IISISSASHQYIDKHNIHKA-TLDAIYHA---VENLQVIPRSALIDGRSIP 126
                    ++  S   H   D    + A  +  + H    V++  V PR     G  + 
Sbjct: 63  YHISRVPPGVVDRSVGRHMLNDLEARYMARVITRLGHGTTYVDSCDVNPRRF---GGRVS 119

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           E       +  + D   + ++AASI+AKV RDR +    K +     D   GYP+ + 
Sbjct: 120 EMSGRTVRSYHRADDRFVIVSAASILAKVARDRSIERLRKSH-----DVGSGYPSDRR 172


>gi|325067038|ref|ZP_08125711.1| putative ribonuclease H [Actinomyces oris K20]
          Length = 244

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 108/226 (47%), Gaps = 36/226 (15%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISH 65
           RP   LE  + E   + V G+DEVGRGALAGPV V   I+     ++ P G+ DSK+++ 
Sbjct: 8   RPDRSLEKALLETYDY-VGGLDEVGRGALAGPVSVGLAIVARRTDDDFPEGLADSKQLTA 66

Query: 66  KKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQV---IPRSALID 121
           + R  L E +    +  +++ AS   ID+H I  A   A   A++ +      PR  ++D
Sbjct: 67  RARTGLVEPVRGWLVDHAVAHASPAEIDEHGIVAALRMAGLRALQQVADRGHAPRIIILD 126

Query: 122 GRS------------------IPEDLPCQAFAV--------IKGDSISLSIAAASIIAKV 155
           G +                  + E  P  A  +        +K D+    +AAAS++AKV
Sbjct: 127 GVADWLTAAQPDLLTALEGAHVSETAPAPAEVLSTPPVHMEVKADARCAVVAAASVLAKV 186

Query: 156 TRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            RDRLM  A    P YG+ S+ GY +  H + +   G S  HR ++
Sbjct: 187 ERDRLM--ADLDDPGYGWASNKGYASPAHVRGLTVLGASDQHRRSW 230


>gi|16082425|ref|NP_394911.1| ribonuclease HII [Thermoplasma acidophilum DSM 1728]
 gi|11387092|sp|P57673|RNH2_THEAC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|10640800|emb|CAC12578.1| probable ribonuclease HII [Thermoplasma acidophilum]
          Length = 212

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 37/177 (20%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAIISISS 85
            GIDE GRG + GP+V++ +  D + +    + DSK ++ K+R EL+EKI       +  
Sbjct: 8   CGIDEAGRGPVIGPMVISLVCCDLSFLKEIRVKDSKALTRKRRSELFEKI-------MGR 60

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL---PC----------- 131
            S +Y     +H   L+ +  A E+L  I    ++D     +DL    C           
Sbjct: 61  CSVRY---RILHPKDLNRMM-AAESLNKIEEDEIVDLLRYADDLVYIDCYDVIEERAQEI 116

Query: 132 -------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                  Q     K D+I  +++AASI++KV RD  +   H ++ D+G     GYP+
Sbjct: 117 IQMRSGRQVVCKHKADAIFPAVSAASIVSKVIRDAEIDRLHDRFGDFG----SGYPS 169


>gi|330831767|ref|XP_003291928.1| hypothetical protein DICPUDRAFT_11524 [Dictyostelium purpureum]
 gi|325077872|gb|EGC31557.1| hypothetical protein DICPUDRAFT_11524 [Dictyostelium purpureum]
          Length = 206

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 32/164 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII-- 81
            IDE G+G+L GP+VV+ +++D          G+ DSK++S  KRE LY  I+  +I   
Sbjct: 4   SIDEAGKGSLLGPLVVSCVVMDSKTEQLFKEQGVKDSKQLSPLKRESLYNLISEKSIYHQ 63

Query: 82  SISSASHQYIDK----HNIHKATLDAIYHAVEN----------LQVIPRSALIDGRSIPE 127
           +I  ++H  IDK    H +++   +  Y  +++          ++VI  S  I+  S   
Sbjct: 64  TIILSNHD-IDKRRSLHTLNEIETNIFYQLIKDSILNLAKNQPVKVILDS--IESNSEKY 120

Query: 128 DLP---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162
            LP         C+     K D    S+ AASI+AKV RD+ ++
Sbjct: 121 SLPFKSYFGSPTCEIICETKADIKYTSVGAASILAKVKRDQFIK 164


>gi|156938224|ref|YP_001436020.1| RNase HII [Ignicoccus hospitalis KIN4/I]
 gi|156567208|gb|ABU82613.1| RNase HII [Ignicoccus hospitalis KIN4/I]
          Length = 215

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 20/171 (11%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA-I 80
           VAGIDE GRG + G + VA + ++ +     +  G+ +SK ++  KR   Y  I  +A +
Sbjct: 6   VAGIDEAGRGPVIGSMFVALVAIEQDQLEKLVSLGLKESKMLTPNKRRYFYNLIMKTAKL 65

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVEN------LQVIPRSALIDG----RSIPEDLP 130
           + I     + IDK N+ + T++ +   +E       + V+    + +G    R++ E  P
Sbjct: 66  VLIKEVKAEEIDKRNLSELTIEVMKELLETALNKVKIDVVCVDIVGNGAKQRRALGEVFP 125

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                + KGD+   + AAASI+AK  R+R +     +Y D+G     GYP+
Sbjct: 126 -DVIVMKKGDASCPAAAAASIVAKEARERHVSQLRARYGDFGS----GYPS 171


>gi|319789920|ref|YP_004151553.1| ribonuclease HIII [Thermovibrio ammonificans HB-1]
 gi|317114422|gb|ADU96912.1| ribonuclease HIII [Thermovibrio ammonificans HB-1]
          Length = 270

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 23/165 (13%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA 79
            P  G DE G+G   GP+VVA I+ D       I  G+ DSKK+S++K EEL  +IT + 
Sbjct: 72  LPRIGCDEAGKGEFVGPLVVACIVADEKCLKRLIELGVKDSKKLSNEKVEELASEITETC 131

Query: 80  -----IISISSASHQYIDKHNIHKATLDAIYHA-VENL--QVIPRSALIDGRSIPEDLPC 131
                ++     +  Y    NI++  L+A+Y   V +L  +  P+  ++D  S   +   
Sbjct: 132 HGKVKLLIPEKYNRAYSKFKNINR-LLEAVYREIVSDLCEKFSPKVVVVDKFSNRAEEVL 190

Query: 132 QAFAVIKGDSIS--------LSIAAASIIAKVTRDRLMRIAHKKY 168
           +   V+KG  +         L++AAASI+AK  R + M+   K++
Sbjct: 191 K--DVVKGARLEVRPKAEDDLAVAAASIVAKAVRLKTMKELEKRF 233


>gi|257052068|ref|YP_003129901.1| ribonuclease HII [Halorhabdus utahensis DSM 12940]
 gi|256690831|gb|ACV11168.1| ribonuclease HII [Halorhabdus utahensis DSM 12940]
          Length = 234

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 92/206 (44%), Gaps = 33/206 (16%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85
           AG+DE G+G + G +  A ++ DP ++P  ++DSK +S ++REEL   I   A  +++S 
Sbjct: 25  AGVDEAGKGPVLGSMFAACVVADPADLPDDVDDSKDLSAERREELATVIRDRAHAVAVSE 84

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL---IDGRS-------------IPEDL 129
                ID       TL  + HA E L+ +    L   +D                I  DL
Sbjct: 85  IPVARIDDTETDMNTLTVVAHA-EALEPVASDGLATYLDAGDTNAVRFERRVADRIEADL 143

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP---TAKH-- 184
             +A      D+    + AASIIAKV RD  +     +Y D G     GYP   T +   
Sbjct: 144 DLRAEH--GADAAYPIVGAASIIAKVERDAHVAELAAEYGDLG----SGYPGDSTTRDFL 197

Query: 185 QQVIKEKG--PSCIHR--LTFRPLRN 206
           +  I E G  P+C      T R +RN
Sbjct: 198 EDYIAEHGELPACARESWQTSRDVRN 223


>gi|289704584|ref|ZP_06501017.1| ribonuclease HII [Micrococcus luteus SK58]
 gi|289558704|gb|EFD51962.1| ribonuclease HII [Micrococcus luteus SK58]
          Length = 250

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 97/198 (48%), Gaps = 23/198 (11%)

Query: 26  VAGIDEVGRGALAGPVVV---AAIILDPNNIPFGINDSKKISHKKREELYEKITS-SAII 81
           VAG+DEVGRGALAGPVVV   A  +     IP  + DSK ++ ++R  L  +I   +A +
Sbjct: 37  VAGMDEVGRGALAGPVVVGVCAVWLPAAGQIPP-VRDSKALTDRRRRVLIPQIEDWAAGV 95

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVI----PRSALIDGRS------------- 124
           ++  A    ID   I  A   A   A   L       P + ++DGR              
Sbjct: 96  ALGEAGPAEIDALGISAALGLAGRRAWAALCAAVGQEPVALVLDGRDDWLSRSDPDAGPA 155

Query: 125 -IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
             P  LP +   +++ +    ++AAASI AKV RD +M      +P YG+  + GY +A 
Sbjct: 156 PAPRPLPPEPTMLVRAEDRCATVAAASIAAKVARDDVMIALDAAHPGYGWAGNKGYGSAA 215

Query: 184 HQQVIKEKGPSCIHRLTF 201
           H+  + E+G S  HR ++
Sbjct: 216 HRAALAERGASEQHRRSW 233


>gi|17536263|ref|NP_495796.1| RNase H family member (rnh-2) [Caenorhabditis elegans]
 gi|11387113|sp|Q9U6P6|RNH2A_CAEEL RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
           AltName: Full=RNase H(35); AltName: Full=Ribonuclease HI
           large subunit; Short=RNase HI large subunit; AltName:
           Full=Ribonuclease HI subunit A
 gi|6010657|gb|AAF01208.1|AF181619_1 putative ribonuclease H2 large subunit [Caenorhabditis elegans]
 gi|15718212|emb|CAC70103.1| C. elegans protein T13H5.7, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 297

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 91/191 (47%), Gaps = 40/191 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAII--LDPN----NIPFGINDSKKISHKKREELYEKIT--- 76
           V GIDE GRG + GP+V AA I  LD N    N+  G++DSK ++  KREE++ K+    
Sbjct: 23  VLGIDEAGRGPVLGPMVYAAAISPLDQNVELKNL--GVDDSKALNEAKREEIFNKMNEDE 80

Query: 77  -------------SSAIISISSASHQYIDKHNI-HKATLDAIYHAVE-NLQVIPRSALID 121
                        S  +IS S    Q    + + H+A +  I  A+  N+ V+       
Sbjct: 81  DIQQIIAYALRCLSPELISCSMLKRQKYSLNEVSHEAAITLIRDALACNVNVVEIKVDTV 140

Query: 122 G------RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRD-RL----MRIAHKKYP 169
           G        + +  P  +  V  K DS+   ++AASI AKVTRD RL     R  + K P
Sbjct: 141 GPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDSRLRNWQFREKNIKVP 200

Query: 170 DYGFDSHVGYP 180
           D G+ S  GYP
Sbjct: 201 DAGYGS--GYP 209


>gi|224097610|ref|XP_002311009.1| predicted protein [Populus trichocarpa]
 gi|222850829|gb|EEE88376.1| predicted protein [Populus trichocarpa]
          Length = 297

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 25/162 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG + GP+V   +      +         DSK +  +KREEL+EK+ ++ +I
Sbjct: 16  IMGIDEAGRGPVLGPMVYGCLYCARSYEKTLSTLKFADSKTLKEEKREELFEKLKANELI 75

Query: 82  SIS---------SASHQYIDKHNIHKATLDA---IYHAVENLQVIPRSALIDGRSIPED- 128
             +         SA      K N+++ + D+   +   V N+ V+     +D    PE  
Sbjct: 76  GWAVDVIDPRELSAKMLKKIKINLNEISHDSASGLVTRVLNMGVLLTDVYVDTVGDPEKY 135

Query: 129 -------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMR 162
                   P   F V K  DS+   ++ ASI+AKVTRDR +R
Sbjct: 136 RIKLSERFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALR 177


>gi|124486303|ref|YP_001030919.1| ribonuclease HII [Methanocorpusculum labreanum Z]
 gi|189043623|sp|A2STJ6|RNH2_METLZ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|124363844|gb|ABN07652.1| RNase HII [Methanocorpusculum labreanum Z]
          Length = 212

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 24/193 (12%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-DPNNIP-FGINDSKKISHKKREELYEKITSSAIISI 83
           + G+DE G+G + GP++ A +++ D + +   GI DSKK+S KKRE L+E+IT S     
Sbjct: 3   ICGVDEAGKGPVLGPMITAGVLVSDMSELEMLGIKDSKKLSPKKRESLFEEITFSWKTYT 62

Query: 84  SSASHQYIDKHNIHKATLDAIYHA--VENLQ---VIPRSALIDGRSIPEDL------PCQ 132
              +   ID          A  HA  V  L    V   +  ++ +   E++         
Sbjct: 63  VVRTPFDIDSREGTMNAFTASCHADVVRALCADFVYLDACDVNAKRFGENVLRLSGSSAH 122

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-----AKHQQV 187
             +  K D+    + AASI+AKVTRDR +    ++Y + G     GYP+     +   + 
Sbjct: 123 VCSEHKADAKYAVVGAASIVAKVTRDRCIADLKEEYGEIG----SGYPSDPATISFLTEY 178

Query: 188 IKEKG--PSCIHR 198
           I+ +G  P C  R
Sbjct: 179 IRTRGEVPLCARR 191


>gi|308509890|ref|XP_003117128.1| CRE-RNH-2 protein [Caenorhabditis remanei]
 gi|308242042|gb|EFO85994.1| CRE-RNH-2 protein [Caenorhabditis remanei]
          Length = 323

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 89/189 (47%), Gaps = 36/189 (19%)

Query: 26  VAGIDEVGRGALAGPVVVAAII--LDPNN--IPFGINDSKKISHKKREELYEKITSSAII 81
           V GIDE GRG + GP+V AA I  LD N      G++DSK ++  KREE+++K+ +   I
Sbjct: 49  VLGIDEAGRGPVLGPMVYAAAISPLDQNTELKNLGVDDSKALNEAKREEIFDKMNNDEEI 108

Query: 82  ------SISSASHQYIDKHNI--HKATLDAIYHAVE----------NLQVIPRSALIDG- 122
                 +I S S + I    +  HK +L+ + H             N+ V+       G 
Sbjct: 109 QQVVAYAIRSLSPELISASMLKRHKYSLNEVSHDAAIALIKDAFACNVNVVEIKVDTVGP 168

Query: 123 -----RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKK-----YPDY 171
                  + +  P  +  V  K DS+   ++AASI AKVTRD  +R    K      P+ 
Sbjct: 169 KATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDTRLRNWQFKEKGIRIPEN 228

Query: 172 GFDSHVGYP 180
           G+ S  GYP
Sbjct: 229 GYGS--GYP 235


>gi|295132558|ref|YP_003583234.1| ribonuclease HII [Zunongwangia profunda SM-A87]
 gi|294980573|gb|ADF51038.1| ribonuclease HII [Zunongwangia profunda SM-A87]
          Length = 73

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 40/59 (67%)

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           +SIA ASI+AK  RD  M I H++YP Y +  + GYPT +H++ I++ G +  HR +F+
Sbjct: 1   MSIATASILAKTYRDEYMEIIHEEYPIYNWKKNKGYPTKEHREAIRKYGITKYHRKSFK 59


>gi|301100786|ref|XP_002899482.1| ribonuclease H2 subunit A, putative [Phytophthora infestans T30-4]
 gi|262103790|gb|EEY61842.1| ribonuclease H2 subunit A, putative [Phytophthora infestans T30-4]
          Length = 791

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 112/244 (45%), Gaps = 54/244 (22%)

Query: 6   IPERPHFELEAMVREK------NMWPVA-GIDEVGRGALAGPVVVAA----IILDPNNIP 54
           +P+RP+ +   ++         N  PV  GIDE GRG + GP+V  A    + ++     
Sbjct: 1   MPDRPNLQRTLLLASDCPASCLNGVPVMLGIDEAGRGPVMGPMVYGAAYWPVAVNDAMCA 60

Query: 55  FGINDSKKISHKKREELYEKITSSA----IISISSASHQYIDK-----HNIHKATLDA-- 103
            G +DSK +S + R +L+EK+ S+     I+ + SA+ +  DK      N+++ + DA  
Sbjct: 61  LGFDDSKALSAESRAQLFEKMQSTEGLGWIVRLISAA-EISDKMQRQTSNLNEMSRDAAI 119

Query: 104 -IYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI------------KGDSISLSIAAAS 150
            + + V+N   + +   +D    P     Q+F               K DS+   ++AAS
Sbjct: 120 QLINEVQNKGAVVKKVFVDTVGDPRWY--QSFLTKHFNGTIEFRVEKKADSLFKVVSAAS 177

Query: 151 IIAKVTRDRLMRIAHKKYP--DYGFDSHVGYPTAK--------HQQVIKEKGP------S 194
           I AKVTRDR++     + P  +   D   GYP+          +++ +K + P       
Sbjct: 178 IAAKVTRDRVISDWMWESPALELPTDFGSGYPSDPNWGTVEPFNEKAVKVEWPHDKDLEK 237

Query: 195 CIHR 198
           C+HR
Sbjct: 238 CLHR 241


>gi|159467162|ref|XP_001691767.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158279113|gb|EDP04875.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 266

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 90/193 (46%), Gaps = 29/193 (15%)

Query: 14  LEAMVREKNMWPVA----GIDEVGRGALAGPVVVAAII--LDPNNIPFGINDSKKISHKK 67
           L + +R    W  A    G+DE GRG + GP+V A     +  +    G  DSK ++H+ 
Sbjct: 21  LVSQLRTGEEWTKAPCILGVDEAGRGPVLGPMVYACAFTSVSTDISSRGYADSKTLTHET 80

Query: 68  REELYEKITSSAIISISS--ASHQYIDKHNI--HKATLDAIYHAVENLQVIPRSALIDGR 123
           RE+L++ I + + +   +   S Q+I  H +   K +L+A+  A +    I R AL  G 
Sbjct: 81  REKLFKAIDADSGVGWVAHIMSAQFISGHMLGRDKTSLNAL--AFDATCAIIRRALESGA 138

Query: 124 SIPED---------------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
           ++  D                P   F V  K DS+   ++AASI+AKV RD+ +  + K 
Sbjct: 139 NVYVDTVGDADRHRDRLSRAFPGLDFTVCPKADSLYPIVSAASIVAKVIRDKSLTDSQKS 198

Query: 168 YPDYGFDSHVGYP 180
               G +   GYP
Sbjct: 199 LGLTG-EVGTGYP 210


>gi|254167831|ref|ZP_04874680.1| ribonuclease HII [Aciduliprofundum boonei T469]
 gi|289596631|ref|YP_003483327.1| ribonuclease HII [Aciduliprofundum boonei T469]
 gi|197623122|gb|EDY35688.1| ribonuclease HII [Aciduliprofundum boonei T469]
 gi|289534418|gb|ADD08765.1| ribonuclease HII [Aciduliprofundum boonei T469]
          Length = 212

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 19/179 (10%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKI--TSSAIISIS 84
           G+DE GRG + GP+VVA +  + + I    + DSKK+S K+RE L E+I   +S I+ I 
Sbjct: 4   GVDEAGRGPVIGPLVVAGVCGEESKIASLRVKDSKKLSPKRRERLAEEIKKVASKIVVIK 63

Query: 85  SASHQ---YIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLP------CQ 132
               +     +K  +++  ++     +  L   +V   +A ++     E++        +
Sbjct: 64  IEPEEIDALREKMTLNEIEVELFARVISQLNGDKVYVDAADVNEDRFAEEIKKKLGKDVE 123

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
             +  K DS    ++AASIIAKV RDR++    K+  ++G     GYP  +  +   EK
Sbjct: 124 IISEHKADSKYPMVSAASIIAKVERDRIINELKKELGEFG----SGYPADERTKRFLEK 178


>gi|321262130|ref|XP_003195784.1| ribonuclease HI large subunit [Cryptococcus gattii WM276]
 gi|317462258|gb|ADV23997.1| Ribonuclease HI large subunit, putative [Cryptococcus gattii WM276]
          Length = 260

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 76/161 (47%), Gaps = 25/161 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAA----IILDPNNIPFGINDSKKISHKKREELYE--KITSSA 79
           + GIDE GRG + GP+V AA    +   P     G +DSK +S + R+ L+E  ++ S  
Sbjct: 38  IMGIDEAGRGPVLGPMVYAAAYCPLSFKPTLESIGFDDSKALSAETRQRLWETFEVHSPL 97

Query: 80  IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED----------- 128
             S S+ S Q I    + K  ++    A ++   + ++AL  G ++ E            
Sbjct: 98  CYSSSTLSPQDISSSMLRKVPINLNRQAEDSTVGLIQAALNRGINVTECYVDALGPAPQW 157

Query: 129 -------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLM 161
                   P   F V  K DS+   + AASI+AKVTRDR +
Sbjct: 158 QARLTAIFPTIKFTVCPKADSLFKIVGAASIVAKVTRDRYV 198


>gi|15679041|ref|NP_276158.1| ribonuclease HII [Methanothermobacter thermautotrophicus str. Delta
           H]
 gi|7227913|sp|O27102|RNH2_METTH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|2622126|gb|AAB85519.1| ribonuclease HII [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 206

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 81/173 (46%), Gaps = 18/173 (10%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           V GIDE GRG + GP+VVA +++           G+ DSKK++ ++R  L  KI   A +
Sbjct: 3   VLGIDEAGRGPVIGPLVVAGVMIPERKFSILRKMGVKDSKKLTPERRRFLARKIRRIARV 62

Query: 82  SISSASHQYIDKHNIHKATLDAIYH-AVENL--QVIPRSALIDGRSI-PEDLPCQA---F 134
                S   ID+       L+ I   A++ +  +  P   +ID   + PE L  +    F
Sbjct: 63  FTVKISASDIDRMRERGFNLNEIEKIAIKRIIPEAQPDRVIIDSVDVKPERLEEEIRSHF 122

Query: 135 AVIK------GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
             I+       D+    +AAASIIAKV RD  +    KK    G D   GYP+
Sbjct: 123 GEIEVTAEHGADTRYYPVAAASIIAKVERDLEIESIQKKNRKLG-DIGSGYPS 174


>gi|298674468|ref|YP_003726218.1| ribonuclease HII [Methanohalobium evestigatum Z-7303]
 gi|298287456|gb|ADI73422.1| ribonuclease HII [Methanohalobium evestigatum Z-7303]
          Length = 218

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 56/195 (28%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           VAGIDE G+G + G + +A +++D   I      G+ DSKKIS +KREEL  KI      
Sbjct: 3   VAGIDEAGKGPVIGSMCIAGVVVDEAKINSLKNLGVTDSKKISPRKREELAHKI------ 56

Query: 82  SISSASHQYIDKHNIHKAT---LDAIYH--------------AVENLQVIPRSALIDGRS 124
                  +Y+D + I + T   +D + +               VENL   P    +D   
Sbjct: 57  ------KKYVDNYFIFEITPSQIDELRNVMSMNDIMVLGFSRVVENLN--PELVYVDSAD 108

Query: 125 I-PEDL--------------PCQAFAVI---KGDSISLSIAAASIIAKVTRDRLMRIAHK 166
           + PE                  +   +I   + D +   ++AASIIAKV RD L+   + 
Sbjct: 109 VKPERFAEKIRSEYSKSNKTASENIKIISEHEADVVYSVVSAASIIAKVRRDELV---NN 165

Query: 167 KYPDYGFDSHVGYPT 181
              ++G D   GYP+
Sbjct: 166 LKEEFGVDFGSGYPS 180


>gi|294891483|ref|XP_002773596.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC
           50983]
 gi|239878780|gb|EER05412.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC
           50983]
          Length = 339

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 83/188 (44%), Gaps = 41/188 (21%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA---- 79
           GIDE GRG + GP+V  A I D          G NDSK+++  KR EL+E I + A    
Sbjct: 57  GIDEAGRGPVFGPMVYGAAISDIRKSDALGKMGFNDSKQLTEAKRSELFEDIHNEALKDD 116

Query: 80  --------IISISSASHQYIDKHNI------HKATLDAIYHAV-ENLQVIPRSALIDGRS 124
                   +++    S + + ++ +      H+  +  I HA+ E + V  +   +D   
Sbjct: 117 GVLGFAVHVLTAHEISTKMLRRNKVNLNRISHETAIGLIEHALSEGINV--KEVYVDTVG 174

Query: 125 IPEDLPCQAFAVIK------------GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172
            PE    +  ++ K             D+I    +AASI AKV RDRL+      YP+ G
Sbjct: 175 DPERYQNKLSSIFKRRGVDTIVVCKKADAIYPICSAASICAKVIRDRLVEEDISYYPEVG 234

Query: 173 FDSHVGYP 180
                GYP
Sbjct: 235 ----SGYP 238


>gi|296108883|ref|YP_003615832.1| ribonuclease HII [Methanocaldococcus infernus ME]
 gi|295433697|gb|ADG12868.1| ribonuclease HII [Methanocaldococcus infernus ME]
          Length = 223

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 36/179 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87
           G+DE GRG + GP+VV A   +         DSKK+S +KRE+L +++    I  I   S
Sbjct: 4   GVDEAGRGPVIGPLVVCAYASEEE---IEAEDSKKLSKEKREKLRKELEKKGIFEIVKVS 60

Query: 88  HQYIDK----HNIHKATLDAIYHAVENL--------------------QVIPRSALIDGR 123
            + +++     N+++  ++    A++NL                    +   R  L   R
Sbjct: 61  AEELNRLMKSKNLNEIEVELFAKAIKNLIEKHNLKDVEIYVDSCSPNREKFKRKLLSKLR 120

Query: 124 SIP-EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
            +  +DL  +     K D     ++AASIIAK  RDR +    K Y D+G     GYP+
Sbjct: 121 GLSIKDLIVEH----KADEKYKVVSAASIIAKTERDREIEELKKIYGDFG----SGYPS 171


>gi|150399435|ref|YP_001323202.1| ribonuclease HII [Methanococcus vannielii SB]
 gi|189043627|sp|A6UQ18|RNH2_METVS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|150012138|gb|ABR54590.1| ribonuclease HII [Methanococcus vannielii SB]
          Length = 244

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 26/177 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS---- 77
           + G+DE GRG + GP+V++ + +   ++       + DSK+++ K+REE Y  I      
Sbjct: 25  ILGLDEAGRGPVLGPMVISVVKVTEKDLDKINSLDLKDSKQLTKKRREEYYNIINECFEV 84

Query: 78  SAIISISSASHQYIDKHNIHKATLDAI-------YHAVENLQVI-------PRSALIDGR 123
             I+       +Y+   N++K  L A            EN+++         +S L   +
Sbjct: 85  QKIVLAPEKIDEYMKTSNLNKIELSAFSKLSNHFLKEYENVKIFIDACSSSEQSFLNQFK 144

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           +   +   +  A  K D     ++AASIIAKVTRD ++    +++ D G     GYP
Sbjct: 145 AKLINKKVEIIAEHKADEKYKIVSAASIIAKVTRDNIIESYKEEFGDIG----SGYP 197


>gi|322372194|ref|ZP_08046735.1| ribonuclease HII [Haladaptatus paucihalophilus DX253]
 gi|320548203|gb|EFW89876.1| ribonuclease HII [Haladaptatus paucihalophilus DX253]
          Length = 212

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 22/171 (12%)

Query: 28  GIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86
           G+DE GRG + G +  AA+ I DP+++P GI+DSK +S ++REEL   + +   +++  A
Sbjct: 3   GVDEAGRGPVLGSMFAAAVAIDDPDDLPDGIDDSKNLSPERREELAAALRADEAVAVGVA 62

Query: 87  --SHQYIDKHNIHKATLDAIYH--AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
             +   ID       TL    H  A+  +       ++D     E    +  A   G  I
Sbjct: 63  EITTTRIDDPETDMNTLTVAAHGEAISRIVSGGERGIVDACDTSESRFARRVAAAVGPEI 122

Query: 143 SLS-----------IAAASIIAKVTRD-RLMRIAHKKYPDYGFDSHVGYPT 181
           ++            + AASI+AKV RD  + R+A +     G  S  GYP+
Sbjct: 123 TVEAEHGADETHAIVGAASIVAKVERDAHVARLAEQH---GGVGS--GYPS 168


>gi|237752170|ref|ZP_04582650.1| rnase [Helicobacter winghamensis ATCC BAA-430]
 gi|229376412|gb|EEO26503.1| rnase [Helicobacter winghamensis ATCC BAA-430]
          Length = 161

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 68/153 (44%), Gaps = 4/153 (2%)

Query: 50  PNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVE 109
           P ++   + DSK +S KKR+ L   +   A   I       ID   +     +A+    E
Sbjct: 7   PESLKNSLRDSKTLSQKKRDALANILKDYATFKIIKKEANEIDTKGLSACIKEAL---QE 63

Query: 110 NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
            L  I     I   +    +P     + KGDS   +I+AASI+AK  +D  M   H  YP
Sbjct: 64  ILSTIYAPFYIFDGNCNFKIP-HLKTLTKGDSKLHTISAASILAKSAKDAEMLEFHALYP 122

Query: 170 DYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            Y F  + GY T  H Q I   G S IHR ++R
Sbjct: 123 HYDFARNKGYGTKAHIQAIATHGLSPIHRKSYR 155


>gi|266625485|ref|ZP_06118420.1| ribonuclease HII [Clostridium hathewayi DSM 13479]
 gi|288862611|gb|EFC94909.1| ribonuclease HII [Clostridium hathewayi DSM 13479]
          Length = 78

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 34/47 (72%)

Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
          V GIDE GRG LAGPVV  A+IL  +     +NDSKK+S K+REEL+
Sbjct: 32 VCGIDEAGRGPLAGPVVAGAVILPGDCEILFLNDSKKLSEKRREELF 78


>gi|307595739|ref|YP_003902056.1| ribonuclease HII [Vulcanisaeta distributa DSM 14429]
 gi|307550940|gb|ADN51005.1| ribonuclease HII [Vulcanisaeta distributa DSM 14429]
          Length = 218

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 83/188 (44%), Gaps = 48/188 (25%)

Query: 26  VAGIDEVGRGALAGPVVVA-AIILDPNNI-PFGINDSKKISHKKREELYEKITSSAIISI 83
           V GIDE GRG + GP+V+A A+  D N +   GI DSK++S   R  L+         SI
Sbjct: 5   VGGIDEAGRGPVIGPMVMAIAVTNDMNRLKAMGIRDSKELSPAGRARLF---------SI 55

Query: 84  SSASHQYIDKHNIHKATLDA-IYHAVENL---------------QVIPRSALIDGRSIPE 127
             ++  YID   +    +D  +Y    N+                V P+   ID    P+
Sbjct: 56  LKSTLNYIDYEIVEPRVIDNYVYMNALNILEVEIAIKLINRALNSVSPQVVYIDS---PD 112

Query: 128 DLP--------------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173
             P               +  A+   D +   ++AASI+AKV RD ++   H++Y D+G 
Sbjct: 113 PRPERYRDMVKRGVVGNVEVVAMNNADKLIPVVSAASIVAKVIRDSIIEELHREYGDFGS 172

Query: 174 DSHVGYPT 181
               GYP+
Sbjct: 173 ----GYPS 176


>gi|331234733|ref|XP_003330025.1| ribonuclease HI large subunit [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309309015|gb|EFP85606.1| ribonuclease HI large subunit [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 349

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 85/191 (44%), Gaps = 37/191 (19%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-----DPNNIPFGINDSKKISHKK 67
           E E  ++  N W + GIDE GRG + GP+V  A        +   +  G  DSK ++H++
Sbjct: 58  EEEEQLKRDN-W-IMGIDEAGRGPVLGPMVYGAAFCTQAFAEDKLLDLGFADSKTLTHRR 115

Query: 68  REELYEKI--------------------TSSAIISISSASHQYIDKHNIHKATLDAIYHA 107
           REEL E I                    T + I    +    Y        AT + I HA
Sbjct: 116 REELLEMIVHPPADQPLNERVEWNVKVLTPADISQGMNRRSPYNLNAQAFDATCEIIQHA 175

Query: 108 VE---NLQVIPRSALIDGRS----IPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDR 159
           ++   NLQ I    L   ++    + +  P   F V  K DSI   + AAS++AKVTRD 
Sbjct: 176 LDLQYNLQHIYVDTLGPPKTHQMKLEQSFPGIKFTVCSKADSIYPIVGAASVVAKVTRDA 235

Query: 160 LMRIAHKKYPD 170
           +  ++H  +P+
Sbjct: 236 I--VSHWIHPE 244


>gi|302348278|ref|YP_003815916.1| Ribonuclease HII [Acidilobus saccharovorans 345-15]
 gi|302328690|gb|ADL18885.1| Ribonuclease HII [Acidilobus saccharovorans 345-15]
          Length = 223

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 23/176 (13%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA 79
           W + G+DE GRG+L G +++A       N+      G+ DSK+++   RE LY  I    
Sbjct: 3   W-IIGVDEAGRGSLVGELMLACFATKEENLGLLKDMGVRDSKQLTPHSRETLYRSIVRLG 61

Query: 80  IISISSASHQYIDKHNIH----KATLDAIYHAVENLQ-VIPRSALIDG----RSIPEDLP 130
              +       ID+ N++    +A L  +   +  L+  + ++  ID     R +P +L 
Sbjct: 62  EFVVVPIPPAEIDRENVNVLEERAALKGLKVLLSRLRPELVKAIYIDKFGELRILPGELK 121

Query: 131 CQAF---AVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
              F    V+  K D+  + ++AASIIAKV RDR + +    Y   G     GYP+
Sbjct: 122 RLGFRGRLVVEPKADANYVVVSAASIIAKVIRDRRIEVLRSMYGVEG----SGYPS 173


>gi|304315158|ref|YP_003850305.1| ribonuclease HII [Methanothermobacter marburgensis str. Marburg]
 gi|302588617|gb|ADL58992.1| ribonuclease HII [Methanothermobacter marburgensis str. Marburg]
          Length = 207

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 83/175 (47%), Gaps = 22/175 (12%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           V GIDE GRG + GP+VVA +++           GI DSKK++ ++R+ L  KI   + +
Sbjct: 3   VLGIDEAGRGPVIGPLVVAGVMVPERKFSILRKMGIRDSKKLTPERRKFLARKIRRISRV 62

Query: 82  SISSASHQYIDK-----HNIHKATLDAIYHAVENLQVIPRSALIDGRSI-PEDLPCQA-- 133
                S   ID+      N+++    AI   +   Q  P S +ID   + PE L  +   
Sbjct: 63  FTVKISASDIDRMREKGFNLNEIEKIAIKRIIAEAQ--PDSVIIDSVDVKPERLTEEIRS 120

Query: 134 -FAVIK------GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
            F  I+       D+    +AAASIIAKV RD  +    K+    G D   GYP+
Sbjct: 121 HFGDIEVKAEHGADAKYYPVAAASIIAKVERDLEIERIQKRNRKLG-DIGSGYPS 174


>gi|145636491|ref|ZP_01792159.1| ribonuclease HII [Haemophilus influenzae PittHH]
 gi|145270316|gb|EDK10251.1| ribonuclease HII [Haemophilus influenzae PittHH]
          Length = 57

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 34/43 (79%)

Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
          +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR
Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKR 53


>gi|315427583|dbj|BAJ49182.1| ribonuclease HII [Candidatus Caldiarchaeum subterraneum]
          Length = 212

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 102/211 (48%), Gaps = 37/211 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81
           + G+DE GRG + GP+VVAA+  + + +P     G+ DSK +S ++REE++EK+ +S  +
Sbjct: 2   LCGVDEAGRGCVVGPLVVAAVAAERDELPLLRALGVADSKTLSPRRREEIFEKLRASFRV 61

Query: 82  SISSASHQYID---KHNIHKATLDAIYHAVENL--QVIPR---------------SALID 121
                S + I    + N      D  Y  +  L     PR                 L++
Sbjct: 62  GYMLVSPRRISSCLRVNGGDGLNDLEYGVMAELARSFRPRILFVDSPDRDVRRARRRLLE 121

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
              +  D+ C    +++GD   + +AAAS++AKV RDR + +  ++  D+G     GYP+
Sbjct: 122 KLGVEMDVRC----MVRGDRRHVLVAAASVVAKVVRDRKVAMLRRRLGDFG----SGYPS 173

Query: 182 --AKHQQVIKEKGPSCIH---RLTFRPLRNL 207
                + +++  G + I    R+ +  L NL
Sbjct: 174 DPKTRKWLLENLGQAAIKPYIRVGWATLENL 204


>gi|312137140|ref|YP_004004477.1| rnase hii [Methanothermus fervidus DSM 2088]
 gi|311224859|gb|ADP77715.1| RNase HII [Methanothermus fervidus DSM 2088]
          Length = 200

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 20/171 (11%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELYEKITSSAIISI 83
           + GIDE GRG + GP++V  +++D  N      + DSK +S ++R+ L ++I   +   I
Sbjct: 3   ILGIDEAGRGPVLGPLIVCGVLVDDENKLKKLNVRDSKLLSPRRRKILAKEIKKVSKCFI 62

Query: 84  SSASHQYIDKHNIHKATLD-----AIYHAVENLQVIPRSALIDG-----RSIPEDLPCQA 133
                  IDK  I   +L+     A+   ++N    P+  ++D      + + + L  + 
Sbjct: 63  VKIQAYEIDKLRIAGISLNEIERIAMSKIIKNAN--PKKVIVDSIDIKPKRLKKKLQKEN 120

Query: 134 FAVI---KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
             VI   K D     ++AASI+AKV RD  +    K+   Y  D   GYP 
Sbjct: 121 IEVIVEHKADEKYPVVSAASIVAKVERDSEIEKLKKR---YNCDLGSGYPN 168


>gi|227497524|ref|ZP_03927752.1| possible ribonuclease H [Actinomyces urogenitalis DSM 15434]
 gi|226833027|gb|EEH65410.1| possible ribonuclease H [Actinomyces urogenitalis DSM 15434]
          Length = 253

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 4/66 (6%)

Query: 9  RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISH 65
          RP  ELE  +   +   VAG+DEVGRGALAGPV V   ++D   P++ P G+ DSK++S 
Sbjct: 12 RPDRELETTLLASHR-VVAGMDEVGRGALAGPVSVGVALVDTTTPDHFPHGLADSKQLSP 70

Query: 66 KKREEL 71
           +RE L
Sbjct: 71 TRREAL 76


>gi|328849346|gb|EGF98528.1| hypothetical protein MELLADRAFT_46031 [Melampsora larici-populina
           98AG31]
          Length = 279

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 26/161 (16%)

Query: 28  GIDEVGRGALAGPVVVAA----IILDPNNIPFGINDSKKISHKKREELYEKITSSA---- 79
           GIDE GRG + GP+V AA    +         G  DSK ++H+KR  L+E I  S+    
Sbjct: 2   GIDEAGRGPVLGPMVYAASFCPVDFSEELKSLGFADSKTLTHQKRCNLFESIVQSSGKIQ 61

Query: 80  ----IISISSASHQYIDK--HNIHKATLDA---IYHAVENLQVIPRSALIDGRSIPED-- 128
               ++S S  S     +  +N++    DA   I  A  + Q I +   +D    P+   
Sbjct: 62  WNVKVMSPSDISMGMSRRSPYNLNAQAFDATVQIIQAALDHQYILQHIYVDTLGPPKTHQ 121

Query: 129 ------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMR 162
                  P   F V  K DSI   ++AASI+AKVTRD ++ 
Sbjct: 122 LNLQKAFPNLHFTVCSKADSIYPIVSAASIVAKVTRDAIVE 162


>gi|313125351|ref|YP_004035615.1| rnase hii [Halogeometricum borinquense DSM 11551]
 gi|312291716|gb|ADQ66176.1| RNase HII [Halogeometricum borinquense DSM 11551]
          Length = 224

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 25/175 (14%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87
           G DE G+G + GP+V AA+    + +P GI+DSK+++  +REE+ + +     +++  A+
Sbjct: 10  GSDEAGKGPVLGPMVAAAVRAPADALPDGIDDSKRLTSAQREEIDQTLRGRDDVTVGVAT 69

Query: 88  HQYIDKHNIHKATLD------------AIYHAVENLQVIPRSALID----GRSIPEDLPC 131
              ID   I   T D                A +  +V+  +  +D    GR +   +  
Sbjct: 70  ---IDPVRIDDPTTDMNSLTVAAHVAAVAAVAQDADEVVTDAGDVDESRFGRRVRTGVGD 126

Query: 132 QAFAVI-----KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           +   V      + D     + AAS++AKV RD LM    ++Y DYG     GYP+
Sbjct: 127 EGTDVTVVSEHRADETYPHVGAASVVAKVRRDTLMETIGERYEDYGP-VGSGYPS 180


>gi|268324099|emb|CBH37687.1| ribonuclease HII [uncultured archaeon]
 gi|268326416|emb|CBH40004.1| ribonuclease HII [uncultured archaeon]
          Length = 210

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 22/170 (12%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87
           G+DE GRG + G + VA ++        G+ DSK++S  +RE L + I  +  + +   +
Sbjct: 7   GVDEAGRGPVIGSMFVAGVLNYDGLEELGVKDSKRLSASRREHLAKIIEDATEVHVVEMT 66

Query: 88  HQYIDK----HNIHKATLDAIYHAVENLQVIPRSALIDGRSI-PEDLPC----------- 131
              IDK      ++K T++     + + Q  P  A +D   + PE               
Sbjct: 67  ASEIDKAREERTLNKITVELFSEVINHFQ--PARAFVDAADVKPERFAANLRSNYKRVGE 124

Query: 132 -QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
            +  +  K D     ++AASI+AKV RDR +R+      + G +   GYP
Sbjct: 125 LEIISEWKADDHYPVVSAASIVAKVHRDRSIRVLE---AEIGAEIGSGYP 171


>gi|294495980|ref|YP_003542473.1| RNase HII [Methanohalophilus mahii DSM 5219]
 gi|292666979|gb|ADE36828.1| RNase HII [Methanohalophilus mahii DSM 5219]
          Length = 215

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 84/183 (45%), Gaps = 33/183 (18%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI- 80
           +AGIDE G+G + GP+ VA +I+D + I      G+ DSKK+S K+RE L  +I   A  
Sbjct: 3   IAGIDEAGKGPVIGPMCVAGVIMDESKINALKNLGVADSKKLSPKRRENLARQIRKYADG 62

Query: 81  ISISSASHQYIDK----HNIHKATLDAIYHAVENLQVIPRSALIDGRSI-PEDLPCQAFA 135
           I I       ID+     +++   +      +ENL+  P  A +D   +  E    +  A
Sbjct: 63  IFIQEIEACQIDELRNIMSMNDIMIRGFSSVLENLK--PDLAYVDAADVNAERFGKKLLA 120

Query: 136 VIK----------------GDSISLSIAAASIIAKVTRDRLM-RIAHKKYPDYGFDSHVG 178
             +                 D I   ++AASIIAKV RD L+  I      D+G     G
Sbjct: 121 AFEKKHEREKKPEIISEHGADDIYPIVSAASIIAKVRRDELIGNIKTAINEDFG----SG 176

Query: 179 YPT 181
           YP+
Sbjct: 177 YPS 179


>gi|225464178|ref|XP_002269817.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
 gi|296086584|emb|CBI32219.3| unnamed protein product [Vitis vinifera]
          Length = 297

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 25/162 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGIN--DSKKISHKKREELYEKITSSAII 81
           + GIDE GRG + GP+V   +      +N    +N  DSK +  +KREEL+E + +   I
Sbjct: 16  MMGIDEAGRGPVLGPMVYGCLYCARSYHNTLSTLNFADSKTLKEEKREELFENLKADESI 75

Query: 82  SIS---------SASHQYIDKHNIHKATLDA---IYHAVENLQVIPRSALIDGRS----- 124
             +         SA     +K N+++ + D+   +   V N+ V+     +D        
Sbjct: 76  GWAVDVIDPWELSAKMLKKNKINLNEISHDSAIGLITRVLNMGVLLTEVYVDTVGDAEKY 135

Query: 125 ---IPEDLPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMR 162
              + E  P   F V K  DS+   ++ ASI+AKVTRDR +R
Sbjct: 136 RIKLSERFPAVKFVVAKKADSLYPVVSGASIVAKVTRDRALR 177


>gi|322511078|gb|ADX06391.1| putative ribonuclease HII [Organic Lake phycodnavirus 2]
          Length = 120

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 4/72 (5%)

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP----DYGFDSHVGYPTAKHQQVIKE 190
            ++KGDSI   I+AASI+AKV RD  +R   K+ P     YG  ++ GY T KH + IK+
Sbjct: 44  CIVKGDSIHKCISAASILAKVERDEYIRTLCKEQPILNERYGLLNNKGYGTKKHVEGIKQ 103

Query: 191 KGPSCIHRLTFR 202
            G S  HR +F+
Sbjct: 104 YGYSEYHRKSFK 115


>gi|315425616|dbj|BAJ47275.1| ribonuclease HII [Candidatus Caldiarchaeum subterraneum]
          Length = 189

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 32/180 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81
           + G+DE GRG + GP+VVAA+  + + +P     G+ DSK +S ++REE++EK+ +S  +
Sbjct: 2   LCGVDEAGRGCVVGPLVVAAVAAERDELPLLRALGVADSKTLSPRRREEIFEKLRASFRV 61

Query: 82  SISSASHQYID---KHNIHKATLDAIYHAVENL--QVIPR---------------SALID 121
                S + I    + N      D  Y  +  L     PR                 L++
Sbjct: 62  GYMLVSPRRISSCLRVNGGDGLNDLEYGVMAELARSFRPRILFVDSPDRDVRRARRRLLE 121

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
              +  D+ C    +++GD   + +AAAS++AKV RDR + +  ++  D+G     GYP+
Sbjct: 122 KLGVEMDVRC----MVRGDRRHVLVAAASVVAKVVRDRKVAMLRRRLGDFG----SGYPS 173


>gi|302836379|ref|XP_002949750.1| hypothetical protein VOLCADRAFT_104408 [Volvox carteri f.
           nagariensis]
 gi|300265109|gb|EFJ49302.1| hypothetical protein VOLCADRAFT_104408 [Volvox carteri f.
           nagariensis]
          Length = 308

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 41/180 (22%)

Query: 16  AMVREKNMW----PVAGIDEVGRGALAGPVVVAAII--LDPNNIPFGINDSKKISHKKRE 69
           + VR    W     + G+DE GRG + GP+V A+    L  +    G  DSK ++H+ RE
Sbjct: 21  SQVRGDEDWIRSPCILGVDEAGRGPVLGPMVYASAFCPLSSDISGRGYADSKTLTHEARE 80

Query: 70  ELYEKITSSA-------IISISSASHQYI--DKHNIHKATLDAIYHAVENLQVIPRSALI 120
           +L+  I ++        I+S    SH  +  DK +++    DA  H +       R+AL 
Sbjct: 81  KLFRAIDANTSVGWVAHIMSAQHISHNMLGRDKVSLNSLAFDATCHVI-------RTALE 133

Query: 121 DGRSIPE------------------DLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLM 161
            G S+ +                    P  +F V  K DS+   ++AASIIAKV RD+ +
Sbjct: 134 SGASVKQVYVDTVGDADRHSERLSRAFPGISFTVCPKADSLYPIVSAASIIAKVIRDKSL 193


>gi|225464176|ref|XP_002269852.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
          Length = 278

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 68/148 (45%), Gaps = 20/148 (13%)

Query: 28  GIDEVGRGALAGPVVVAAIIL--DPNNIPFGIN--DSKKISHKKREELYEKITSSAIISI 83
           GIDE GRG + GP+V   +      +N    +N  DSK +  +KREEL+E + +   I  
Sbjct: 18  GIDEAGRGPVLGPMVYGCLYCARSYHNTLSTLNFADSKTLKEEKREELFENLKADESIGW 77

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS--------IPEDLPCQAFA 135
           +      ID   +    L  +     N+ V+     +D           + E  P   F 
Sbjct: 78  AV---DVIDPWELSAKMLKKVL----NMGVLLTEVYVDTVGDAEKYRIKLSERFPAVKFV 130

Query: 136 VIK-GDSISLSIAAASIIAKVTRDRLMR 162
           V K  DS+   ++ ASI+AKVTRDR +R
Sbjct: 131 VAKKADSLYPVVSGASIVAKVTRDRALR 158


>gi|326771770|ref|ZP_08231055.1| ribonuclease HII [Actinomyces viscosus C505]
 gi|326637903|gb|EGE38804.1| ribonuclease HII [Actinomyces viscosus C505]
          Length = 240

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 98/209 (46%), Gaps = 35/209 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISHKKREELYEKITSSAII- 81
           V G+DEVGRGALAGPV V   I+     ++ P G+ DSK+++ + R  L E +    +  
Sbjct: 24  VGGLDEVGRGALAGPVSVGLAIVARRTDDDFPEGLADSKQLTARARTVLIEPVRGWLVDH 83

Query: 82  SISSASHQYIDKHNIHKATLDA------------------IYHAVENLQVIPRSAL---I 120
           +++ AS   ID+H I  A   A                  I   V +    P+  L   +
Sbjct: 84  AVAHASPAEIDEHGIIGALRVAGLRALQQVADRGHAPGVIILDGVADWLTAPQPDLLTTL 143

Query: 121 DGRSIPEDLPCQAFA--------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172
           +    P+D P  A           +K D+    +AAAS++AKV RDRLM  A    P YG
Sbjct: 144 ESTHAPKDSPEPAEVPSTPPVRMEVKADARCAVVAAASVLAKVERDRLM--ADLDDPGYG 201

Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           + S+ GY +  H + +   G S  HR ++
Sbjct: 202 WASNKGYASPAHIRGLTSLGASDQHRRSW 230


>gi|254565155|ref|XP_002489688.1| Ribonuclease H2 catalytic subunit, removes RNA primers during
           Okazaki fragment synthesis [Pichia pastoris GS115]
 gi|238029484|emb|CAY67407.1| Ribonuclease H2 catalytic subunit, removes RNA primers during
           Okazaki fragment synthesis [Pichia pastoris GS115]
 gi|328350107|emb|CCA36507.1| ribonuclease H2 subunit A [Pichia pastoris CBS 7435]
          Length = 314

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 37/188 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSS----- 78
           G+DE GRG + GP+V          +P    FG  DSK ++ +KR EL E + +      
Sbjct: 53  GVDEAGRGPVVGPMVYGVSYCLEEYEPRLKDFGFADSKTLTEQKRSELLESLCNGDHELR 112

Query: 79  -----AIISISSA--SHQYIDKHNIHKATLDAIYHAVENLQVIP---------RSALIDG 122
                A  SIS+   S   +  HNI    L+   H V  +++I          R   +D 
Sbjct: 113 KNVGWATTSISACDISSAMLKPHNIGNYNLNEQAHDV-TMELIDKVIQKGVNLRHVYVDT 171

Query: 123 --------RSIPEDLPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173
                   + + +  P     V K  D+I   +++AS+ AKVTRD  +R ++ +  +   
Sbjct: 172 VGPPASYQKKLQQRFPALLITVSKKADAIYPCVSSASVCAKVTRDVCLRTSNGE--ENLL 229

Query: 174 DSHVGYPT 181
           D   GYP+
Sbjct: 230 DCGSGYPS 237


>gi|312067297|ref|XP_003136676.1| ribonuclease HI large subunit [Loa loa]
 gi|307768160|gb|EFO27394.1| ribonuclease HI large subunit [Loa loa]
          Length = 303

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 36/169 (21%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81
           V GIDE GRG + GP+V A  +   NN    +  G++DSK ++  KRE+++E++    + 
Sbjct: 31  VVGIDEAGRGPVLGPMVYACAVTLVNNENILLEMGVDDSKVLTEAKREKIFERMEGDNMS 90

Query: 82  SISSASHQYIDKHNIH-------KATLDAIYH--AVE--------NLQVI---------- 114
            +   +H  I    I        K +L+ + H  A E        N+ V+          
Sbjct: 91  ELFGYAHCSISAQMISAAMLGRTKCSLNKLSHDCATELLKLAIDNNINVVEVYVDTVGPK 150

Query: 115 -PRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162
            P  A++  +  P+    Q     K D+    ++AASI+AKV RDR +R
Sbjct: 151 GPYQAMLH-KKFPD---MQIIVSEKADAKFPIVSAASIVAKVKRDRALR 195


>gi|297380504|gb|ADI35391.1| Ribonuclease HII [Helicobacter pylori v225d]
          Length = 154

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            +IKGD     IA AS++AK  +DR MR  H  + +YG+D + GY T +H + + + G +
Sbjct: 69  TIIKGDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGAT 128

Query: 195 CIHRLTFRPLRN 206
             HR +F  L+N
Sbjct: 129 PFHRHSF-TLKN 139


>gi|254167925|ref|ZP_04874774.1| ribonuclease HII [Aciduliprofundum boonei T469]
 gi|197623216|gb|EDY35782.1| ribonuclease HII [Aciduliprofundum boonei T469]
          Length = 212

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 19/179 (10%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKI--TSSAIISIS 84
           G+DE GRG + GP+VVA +  + + I    + DSKK+S K RE L E+I   +S I+ I 
Sbjct: 4   GVDEAGRGPVIGPLVVAGVCGEESKIASLRVKDSKKLSPKSRERLAEEIKKVASKIVVIK 63

Query: 85  ------SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP------CQ 132
                  A  + +  + I       +   +   +V   +A ++     E++        +
Sbjct: 64  IEPEEIDALRERMTLNEIEVELFARVISQLNGDKVYVDAADVNEDRFAEEIKKKLGKDVE 123

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
             +  K DS    ++AASIIAKV RDR++    ++  ++G     GYP+    +   EK
Sbjct: 124 IISEHKADSKYPMVSAASIIAKVERDRIIEELKEELGEFG----SGYPSDDRTKRFLEK 178


>gi|222480377|ref|YP_002566614.1| ribonuclease HII [Halorubrum lacusprofundi ATCC 49239]
 gi|222453279|gb|ACM57544.1| ribonuclease HII [Halorubrum lacusprofundi ATCC 49239]
          Length = 234

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 43/192 (22%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87
           G+DE G+G + GP+V AA++ DP  +P  ++DSK+I+  +RE +  +I ++  +++  A 
Sbjct: 4   GVDEAGKGPVLGPMVAAAVLADPVALPADVDDSKRIAPSRRESIDAEIRATDAVAVGVA- 62

Query: 88  HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA-----------FAV 136
             +++   I +   D     V       R+AL    ++  D P +            FA 
Sbjct: 63  --FVEPAEIDRPDTDMNTLTVRGQARAVRAALHGVVAVDLDEPIRVVADAGDTSEARFAR 120

Query: 137 IKGDSISLS--------------------------IAAASIIAKVTRDRLMRIAHKKYPD 170
             G+S++                            + AAS++AKV RD  M      YP 
Sbjct: 121 RLGESVADPDSDTTDTEHPEVDVSAAHGADEDDPMVGAASVVAKVARDERMADIDADYPA 180

Query: 171 Y-GFDSHVGYPT 181
           Y G  S  GYP+
Sbjct: 181 YDGLGS--GYPS 190


>gi|300710295|ref|YP_003736109.1| ribonuclease HII [Halalkalicoccus jeotgali B3]
 gi|299123978|gb|ADJ14317.1| ribonuclease HII [Halalkalicoccus jeotgali B3]
          Length = 214

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 24/172 (13%)

Query: 28  GIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAI--ISIS 84
           GIDE G+G + GP++ A + + D + +P GI+DSK+++  KR  L E +       I I+
Sbjct: 5   GIDEAGKGPVLGPMIAACVCVPDESVLPEGIDDSKRLTPAKRGRLSEALLGDEAIGIGIA 64

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG----D 140
           + S   ID       +L    HA    +V+     + G     D+    F    G    +
Sbjct: 65  AVSPDRIDTPETDMNSLTVAAHAEAASEVVEPG--MTGICDAGDVDAGRFVHRVGQRLPE 122

Query: 141 SISLS-----------IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
            +SLS           + AAS++AKV RDR +      Y + G     GYP+
Sbjct: 123 GVSLSGEHGADEHHAIVGAASVVAKVERDRRVAALEAAYGEVGS----GYPS 170


>gi|149004283|ref|ZP_01829060.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS69]
 gi|147757777|gb|EDK64791.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS69]
          Length = 134

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 42/63 (66%), Gaps = 6/63 (9%)

Query: 11  HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           +  LE+M+  EK ++      +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKKI 
Sbjct: 51  NLRLESMLSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110

Query: 65  HKK 67
            K+
Sbjct: 111 KKE 113


>gi|110668982|ref|YP_658793.1| ribonuclease HII [Haloquadratum walsbyi DSM 16790]
 gi|109626729|emb|CAJ53196.1| ribonuclease HII [Haloquadratum walsbyi DSM 16790]
          Length = 231

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 37/212 (17%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82
           M P  G DE G+G + GP++ AA+   P+ IP  I+DSK+++   R  L E + S   I 
Sbjct: 1   MGPRIGSDEAGKGPVLGPMICAAVHASPSVIPDDIDDSKRLNASTRRRLRETLESHTAID 60

Query: 83  ISSA---SHQYID-KHNIHKATLDAIYHAVENLQVIPR---SALIDGRSIPED-----LP 130
           I +A     Q  D + +++  TL+    A+ +L  +     + + D   + E      L 
Sbjct: 61  IGTAVIPVAQIDDPRTDMNTLTLNGHIAAIADLDGVATFNGTIVADASDVSESRFATRLE 120

Query: 131 CQAFAVIKG-DSISLS----------------IAAASIIAKVTRDRLMRIAHKKYPDYGF 173
            +      G D+I+L+                +AAASIIAK  RD  +    K+Y   G 
Sbjct: 121 SRLIDECNGIDTIALNHCSIEARHGADEDDPLVAAASIIAKARRDEQITALAKEYETTGP 180

Query: 174 DSHVGYPTAKH-----QQVIKEKG--PSCIHR 198
               GYP+ +      ++ I+  G  P+C  R
Sbjct: 181 IGS-GYPSDQKTRAFLRRYIRTNGKVPACARR 211


>gi|281205710|gb|EFA79899.1| hypothetical protein PPL_06719 [Polysphondylium pallidum PN500]
          Length = 589

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 4/64 (6%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKIT 76
           KN     G+DE G+GA+ GP+V+AA+ LD     +    G+ DSKK+S ++REELY+ I 
Sbjct: 261 KNDMSYIGVDEAGKGAVLGPLVIAAVSLDSAAEQYLKAAGVKDSKKLSAQRREELYDIIK 320

Query: 77  SSAI 80
             A+
Sbjct: 321 ERAL 324


>gi|20090807|ref|NP_616882.1| ribonuclease HII [Methanosarcina acetivorans C2A]
 gi|34395791|sp|Q8TPF4|RNH2_METAC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|19915872|gb|AAM05362.1| ribonuclease Hii [Methanosarcina acetivorans C2A]
          Length = 223

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 88/181 (48%), Gaps = 28/181 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-- 79
           +AGIDE G+G + GP+ +  + ++ +        G+ DSKK++ KKRE+L  +I   A  
Sbjct: 3   IAGIDEAGKGPVIGPMCIGGVKIEESRAHILKVLGVADSKKLTPKKREQLASQIKKHADG 62

Query: 80  --IISISSASHQYIDK-HNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDL---- 129
             I+ I+ A    + K  ++++  +      +E L+   V   +A +      E+L    
Sbjct: 63  FFILEITPAQIDELRKIMSMNEIMVICFAKVLEQLKPDIVYADAADVKAERFAENLRRQY 122

Query: 130 ----PCQA-----FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
               P  A      ++ + D+I   ++AASIIAKV RD L+    K   ++  D   GYP
Sbjct: 123 AKTNPAHAKKIEIISMHQADAIYPVVSAASIIAKVRRDELIEEIKK---EWSVDFGSGYP 179

Query: 181 T 181
           +
Sbjct: 180 S 180


>gi|288561094|ref|YP_003424580.1| ribonuclease HII RnhB [Methanobrevibacter ruminantium M1]
 gi|288543804|gb|ADC47688.1| ribonuclease HII RnhB [Methanobrevibacter ruminantium M1]
          Length = 219

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 20/160 (12%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G+DE GRG + GP+VVA I++           G+ DSK+I+ K+R  LY K+T       
Sbjct: 5   GLDEAGRGPVLGPMVVAGIVIPEKKEKIIERMGVKDSKRITPKRRAVLYRKLTRMFDYET 64

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPR----SALIDGRSIPE--------DLPC 131
              S + ID        L+ I   +  +++I +    + +ID   I E        +   
Sbjct: 65  VEISAKDIDLLRAKGVNLNQI-EKLAMMRIIAKLKADTIIIDSLDIKEGRLEEEMQNFVG 123

Query: 132 QAFAVI---KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
           +   VI   K D   + + AASIIAK  RD ++   +K+Y
Sbjct: 124 EGSKVIAEHKADDKYIVVGAASIIAKTKRDEIINQINKEY 163


>gi|297825539|ref|XP_002880652.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297326491|gb|EFH56911.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 296

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 27/182 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAA----IILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG + GP+V       I    +       DSK +  +KREELYE +     +
Sbjct: 16  LMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEEKREELYENLKLDKSL 75

Query: 82  SIS---------SASHQYIDKHNIHKATLDA---IYHAVENLQVIPRSALIDGRSIPED- 128
             +         SA     +K N+++ + ++   +   V ++ V+   A +D    PE  
Sbjct: 76  GWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPEKY 135

Query: 129 -------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMR--IAHKKYPDYGFDSHVG 178
                   P   F V K  DS+   ++ ASI+AKVTRDR +R  +  +   D   +   G
Sbjct: 136 RIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALREWLVEETGEDINRNFGSG 195

Query: 179 YP 180
           YP
Sbjct: 196 YP 197


>gi|123502031|ref|XP_001328204.1| ribonuclease HII family protein [Trichomonas vaginalis G3]
 gi|121911144|gb|EAY15981.1| ribonuclease HII family protein [Trichomonas vaginalis G3]
          Length = 269

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 93/234 (39%), Gaps = 77/234 (32%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREELYEKITSSAI----- 80
           GIDE GRG   GP+V +  I  PN    P  ++DSKK++ ++REE++++I    +     
Sbjct: 23  GIDEAGRGPALGPMVYSGAIA-PNKYEWPKDVDDSKKLTAEQREEIFDEIKKLPVGFAVR 81

Query: 81  ------------------ISISSASHQ-------------------YIDKHNIHKATLDA 103
                             IS+++ SH                    Y+D   I ++  D 
Sbjct: 82  VISAEEISAKQTALVNPPISLNTVSHHAARDLVQAFLDKGLNIKALYVDTVGIAESYQDW 141

Query: 104 IYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163
           +     N++V  R+                    K D+    + AASI AKVTRDRL+  
Sbjct: 142 LQDKFPNIKVTVRA--------------------KADATYKVVGAASICAKVTRDRLL-- 179

Query: 164 AHKKYPDYGF----DSHVGYPTAKHQQVIKEK------GPSCIHRLTFRPLRNL 207
           A  K+ + G     D   GYP+        E       G   + R  ++P++ +
Sbjct: 180 ADFKFEEPGLEISHDWGSGYPSDPKTSNWLETNFDPVFGYPSVARFDWKPIKMM 233


>gi|294890217|ref|XP_002773106.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC
           50983]
 gi|239878004|gb|EER04922.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC
           50983]
          Length = 350

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 79/178 (44%), Gaps = 37/178 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA---- 79
           GIDE GRG + GP+V  A I D          G NDSK+++  KR EL+E I + A    
Sbjct: 56  GIDEAGRGPVFGPMVYGAAISDIRKSDALGKMGFNDSKQLTEAKRSELFEGIHNEALKDD 115

Query: 80  --------IISISSASHQYIDKHNI------HKATLDAIYHAV-ENLQVIPRSALIDGRS 124
                   +++    S + + ++ +      H+  +  I HA+ E + V  +   +D   
Sbjct: 116 GVLGFAVHVLTAHEISTKMLRRNKVNLNRISHETAIGLIEHALSEGINV--KEVYVDTVG 173

Query: 125 IPEDLPCQAFAVI------------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170
            PE    +  ++             K D+I    +AASI AKV RDRL+      YP+
Sbjct: 174 DPERYQNKLSSIFKRRGVDTIVVCKKADAIYPICSAASICAKVIRDRLVEEEISYYPE 231


>gi|168019116|ref|XP_001762091.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686808|gb|EDQ73195.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 307

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 73/160 (45%), Gaps = 25/160 (15%)

Query: 28  GIDEVGRGALAGPVV--VAAIILDPNN--IPFGINDSKKISHKKREELYEKITSSAIISI 83
           GIDE GRG + GP+V   A   +D           DSK ++  KREELYE + +  ++  
Sbjct: 18  GIDEAGRGPVLGPMVYGCAYCPIDQKERISTLKFADSKALTESKREELYENLKADDLMGW 77

Query: 84  S---------SASHQYIDKHNIHKATLDAIYHAVEN---LQVIPRSALIDGRSIP---ED 128
           +         SA      K N++  + ++    + N   L V      +D    P   +D
Sbjct: 78  AVDVIDPKDLSAKMLRRAKVNLNTISFESAMGLIRNTLDLGVFLTEVFVDTVGDPGKYQD 137

Query: 129 LPCQAFAVI------KGDSISLSIAAASIIAKVTRDRLMR 162
           +    F  I      K DS+   ++AASI+AKVTRDR +R
Sbjct: 138 MLTTKFPGIRFTVSKKADSLFPIVSAASIVAKVTRDRALR 177


>gi|229105182|ref|ZP_04235831.1| Ribonuclease HIII [Bacillus cereus Rock3-28]
 gi|228678108|gb|EEL32336.1| Ribonuclease HIII [Bacillus cereus Rock3-28]
          Length = 295

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 33/202 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           +AG DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 81  IAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQITAIAKQLLHVVPY 140

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 141 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKIAPTTPEGILIDQFTQPDTYY 199

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
             L  Q        +   KG+S+ L++AAASI+A+ +     D L + A    P  G   
Sbjct: 200 KYLTKQKQVQREHVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 258

Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196
            V    AK  Q+V KE+ P  +
Sbjct: 259 QVDIAAAKLIQKVGKERLPEFV 280


>gi|55379775|ref|YP_137625.1| ribonuclease HII [Haloarcula marismortui ATCC 43049]
 gi|74516083|sp|Q5UXT4|RNH2_HALMA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|55232500|gb|AAV47919.1| RNAase HII [Haloarcula marismortui ATCC 43049]
          Length = 211

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 77/169 (45%), Gaps = 20/169 (11%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSA 86
           G+DE G+G + G +  AA+  DP  +P G+ DSK I  ++RE L ++I  SA  + I+  
Sbjct: 4   GVDEAGKGPVLGSMFAAAVRADPAALPGGVGDSKDIRPERRERLAKEIRESADAVGIAEI 63

Query: 87  SHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL---ID---------GRSIPE--DLPCQ 132
           S + ID       TL  +    E L  + R  L   +D         GR + +  D    
Sbjct: 64  SVERIDADETDMNTL-TVEGQAEALSAVARDGLSGTVDAGDTDAARFGRRVADAVDTDVA 122

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
             A    D     + AASIIAKV RD  +     +Y D G     GYP+
Sbjct: 123 VTAEHGADETDSLVGAASIIAKVARDTHVAELAAEYGDVG----SGYPS 167


>gi|229099014|ref|ZP_04229949.1| Ribonuclease HIII [Bacillus cereus Rock3-29]
 gi|228684512|gb|EEL38455.1| Ribonuclease HIII [Bacillus cereus Rock3-29]
          Length = 295

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 33/202 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           +AG DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 81  IAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQITAIAKQLLHVVPY 140

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 141 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKIAPTTPEGILIDQFTQPDTYY 199

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
             L  Q        +   KG+S+ L++AAASI+A+ +     D L + A    P  G   
Sbjct: 200 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMLLPK-GAGK 258

Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196
            V    AK  Q+V KE+ P  +
Sbjct: 259 QVDIAAAKLIQKVGKERLPEFV 280


>gi|229118045|ref|ZP_04247405.1| Ribonuclease HIII [Bacillus cereus Rock1-3]
 gi|228665494|gb|EEL20976.1| Ribonuclease HIII [Bacillus cereus Rock1-3]
          Length = 295

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 33/202 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           +AG DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 81  IAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQITAIAKQLLHVVPY 140

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 141 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKIAPTTPEGILIDQFTQPDTYY 199

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
             L  Q        +   KG+S+ L++AAASI+A+ +     D L + A    P  G   
Sbjct: 200 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMLLPK-GAGK 258

Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196
            V    AK  Q+V KE+ P  +
Sbjct: 259 QVDIAAAKLIQKVGKERLPEFV 280


>gi|48478335|ref|YP_024041.1| ribonuclease HII [Picrophilus torridus DSM 9790]
 gi|73917829|sp|Q6KZK4|RNH2_PICTO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|48430983|gb|AAT43848.1| ribonuclease HII [Picrophilus torridus DSM 9790]
          Length = 199

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 82/172 (47%), Gaps = 28/172 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS----SAII 81
           V GIDE GRG + GP+V+A +  D  +I F +NDSK ++  KR  ++  ++       II
Sbjct: 3   VCGIDEAGRGPVIGPMVMAMVCAD--DINFYVNDSKLLTRNKRSLIFNDVSGLYHKYYII 60

Query: 82  ------------SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
                       S+++   QY +K  I KA  + IY    ++       ++  R+  E +
Sbjct: 61  NPAEIDDAVKKHSLNNLEEQYAEKL-ILKAECEKIYIDCFDVNESRLERILKDRTGKE-V 118

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
            C+  A    D     ++AASIIAKV RD  +      Y D+G     GYP+
Sbjct: 119 ICRHHA----DRDIKIVSAASIIAKVLRDNEIEKLKSIYGDFG----SGYPS 162


>gi|320168268|gb|EFW45167.1| ribonuclease H2 [Capsaspora owczarzaki ATCC 30864]
          Length = 385

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 79/185 (42%), Gaps = 33/185 (17%)

Query: 28  GIDEVGRGALAGPVVVA----AIILDPNNIPFGINDSKKISHKKREELYEKITSS---AI 80
           GIDE GRG + GP+V       +  DP     G +DSKK+    R  L++ I  +     
Sbjct: 113 GIDEAGRGPVLGPMVYGISYCPLSDDPRLRQMGFDDSKKLDEPTRRRLFDDINKANDFMG 172

Query: 81  ISISSASHQYIDKHNIHKA--TLDAIYHAVENLQVIPRSALIDGRSI------------- 125
            S+   S Q I    + +A   L+A+ H  +    + + AL DG +I             
Sbjct: 173 FSVCVISPQDISSSMLRRAKYNLNALSH--DTAMSLVQRALDDGVNIAKVFVDTVGTAET 230

Query: 126 -----PEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP---DYGFDSH 176
                 E  P   F V  K DS+   ++AASI AKV RD ++ I     P     G D  
Sbjct: 231 YQEKLSERFPGIEFKVSAKADSLFPIVSAASICAKVVRDHVLDIWQFSEPHGSTIGRDFG 290

Query: 177 VGYPT 181
            GYP+
Sbjct: 291 CGYPS 295


>gi|293363602|ref|ZP_06610358.1| ribonuclease HII [Mycoplasma alligatoris A21JP2]
 gi|292552951|gb|EFF41705.1| ribonuclease HII [Mycoplasma alligatoris A21JP2]
          Length = 245

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 90/204 (44%), Gaps = 41/204 (20%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-----PFGINDSKKISHKKR-EELYEKI 75
           N   + G+DE G G   GP+V AA+ + PNN+       G+ DSK I ++K+   L  +I
Sbjct: 25  NQLNIIGVDETGVGDYFGPLVTAAVFI-PNNLLEYFKNLGVKDSKLIKNEKQIHYLANEI 83

Query: 76  TSSAIIS---ISSASHQYIDKH--NIHKATLDAIYHAVENLQVI--PRSALIDGRSIPED 128
            S        +S++ +  ID +  NIHK    A  HA+ +L+ +   R+  ID   I + 
Sbjct: 84  KSKCYYKTYVLSNSGYNKIDNNYKNIHKLKFFAHSHAINSLEELLSLRNVKIDYIFIDQY 143

Query: 129 LPCQAF-----AVI-------------------KGDSISLSIAAASIIAKVTRDRLMRIA 164
               AF      +I                   K +SI LS+AAASI+A   R  L+   
Sbjct: 144 TTLNAFNKYYDEIIILNNWSKINEFKSPILLAHKAESIHLSVAAASILA---RAELLDSF 200

Query: 165 HKKYPDYGFDSHVGYPTAKHQQVI 188
            K    Y FD  +G       QV+
Sbjct: 201 KKIKEIYNFDFLLGANQKVKNQVV 224


>gi|229013757|ref|ZP_04170885.1| Ribonuclease HIII [Bacillus mycoides DSM 2048]
 gi|228747426|gb|EEL97301.1| Ribonuclease HIII [Bacillus mycoides DSM 2048]
          Length = 312

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 95/202 (47%), Gaps = 33/202 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT----S 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +  E+ +++      
Sbjct: 97  ILGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLHVVPY 156

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKIAPTTPEGILIDQFTQPDTYY 215

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
             L  Q        +   KG+S+ L++AAASI+A+ +     D L + A  + P  G   
Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKKFDELSKKAGMQLPK-GAGK 274

Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196
            V    AK  Q+V KE+ P  +
Sbjct: 275 QVDIAAAKLIQKVGKERLPEFV 296


>gi|148643039|ref|YP_001273552.1| ribonuclease HII [Methanobrevibacter smithii ATCC 35061]
 gi|222445276|ref|ZP_03607791.1| hypothetical protein METSMIALI_00904 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350165|ref|ZP_05975582.1| ribonuclease HII [Methanobrevibacter smithii DSM 2374]
 gi|189043626|sp|A5ULV6|RNH2_METS3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|148552056|gb|ABQ87184.1| ribonuclease HII, RnhB [Methanobrevibacter smithii ATCC 35061]
 gi|222434841|gb|EEE42006.1| hypothetical protein METSMIALI_00904 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860951|gb|EFC93249.1| ribonuclease HII [Methanobrevibacter smithii DSM 2374]
          Length = 207

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 23/175 (13%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP-----FGINDSKKISHKKREELYEKITSS-- 78
           V GIDE GRG++ GP+V+A +I+ P  +       G+ DSK+++  +R  L  K+     
Sbjct: 3   VLGIDEAGRGSVLGPLVIAGVIV-PEKMDIVLERMGVKDSKRLTPNRRTILSRKLKKMFE 61

Query: 79  ---AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI---------P 126
               +IS     +   D  N+++     +   + NL   P  A++D   I          
Sbjct: 62  YDLVVISAQDIDNMRADGINLNEIERIGMEKILSNLN--PEKAIVDAVDIKAERFQNKLA 119

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
            D      A  K D   + ++AASIIAK  RD  +   +K Y   G     GYP+
Sbjct: 120 NDTGVNVVAEHKADDNYIEVSAASIIAKQERDAHIAEINKDYIKMGGIGS-GYPS 173


>gi|229141283|ref|ZP_04269821.1| Ribonuclease HIII [Bacillus cereus BDRD-ST26]
 gi|229198705|ref|ZP_04325404.1| Ribonuclease HIII [Bacillus cereus m1293]
 gi|228584781|gb|EEK42900.1| Ribonuclease HIII [Bacillus cereus m1293]
 gi|228642064|gb|EEK98357.1| Ribonuclease HIII [Bacillus cereus BDRD-ST26]
          Length = 332

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 27/155 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++ ++     ++L   +  
Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPY 177

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL      + P   LID  + P+   
Sbjct: 178 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPIKPEGVLIDQFTQPDTYY 236

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154
             L  Q        +   KG+S+ L++AAASI+A+
Sbjct: 237 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 271


>gi|170590300|ref|XP_001899910.1| ribonuclease HI large subunit [Brugia malayi]
 gi|158592542|gb|EDP31140.1| ribonuclease HI large subunit, putative [Brugia malayi]
          Length = 282

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 36/167 (21%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIISI 83
           GIDE GRG + GP+V    +   NN       G++DSK ++  KREE++E++  S +  I
Sbjct: 33  GIDEAGRGPVLGPMVYTCAVTLVNNENMLTKIGVDDSKVLTEAKREEIFERMKGSNMSEI 92

Query: 84  -----SSASHQYID-------KHNIHKATLDAIYHAVE-----NLQVI-----------P 115
                 S S Q I        K++++K + D     ++     N+ V+           P
Sbjct: 93  FGYACRSVSAQMISAAMLGRTKYSLNKLSHDCAIELLKLAVDNNINVVDVYVDTVGPKDP 152

Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162
             A++  +  P+    Q     K D+    ++AAS+IAKV RDR +R
Sbjct: 153 YQAMLH-KKFPD---MQIIVSEKADAKFPIVSAASVIAKVKRDRALR 195


>gi|222098020|ref|YP_002532077.1| ribonuclease hiii [Bacillus cereus Q1]
 gi|221242078|gb|ACM14788.1| ribonuclease HII [Bacillus cereus Q1]
          Length = 276

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 27/157 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++ ++     ++L   +  
Sbjct: 62  IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPY 121

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL      + P   LID  + P+   
Sbjct: 122 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPIKPEGVLIDQFTQPDTYY 180

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT 156
             L  Q        +   KG+S+ L++AAASI+A+ +
Sbjct: 181 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYS 217


>gi|206977745|ref|ZP_03238636.1| ribonuclease HIII [Bacillus cereus H3081.97]
 gi|217962037|ref|YP_002340607.1| ribonuclease HIII [Bacillus cereus AH187]
 gi|226736827|sp|B7HRJ7|RNH3_BACC7 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|206744046|gb|EDZ55462.1| ribonuclease HIII [Bacillus cereus H3081.97]
 gi|217067519|gb|ACJ81769.1| ribonuclease HIII [Bacillus cereus AH187]
          Length = 311

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 27/157 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++ ++     ++L   +  
Sbjct: 97  IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPY 156

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL      + P   LID  + P+   
Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPIKPEGVLIDQFTQPDTYY 215

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT 156
             L  Q        +   KG+S+ L++AAASI+A+ +
Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYS 252


>gi|58271424|ref|XP_572868.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57229127|gb|AAW45561.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 260

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 25/161 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAA----IILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG + GP+V AA    +   P     G +DSK +S + R+ L+E       +
Sbjct: 38  IMGIDEAGRGPVLGPMVYAAAYCPLSFKPILESIGFDDSKALSAETRQTLWESFGVHPPL 97

Query: 82  SISSA--SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED----------- 128
             SS+  S Q I  + + K  ++    A +    + ++AL  G ++ E            
Sbjct: 98  CYSSSTLSPQDISSNMLRKVPINLNRQAEDATVGLIQAALNRGINVTECYVDALGPAPQW 157

Query: 129 -------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLM 161
                   P   F V  K DS+   + AASI+AKVTRDR +
Sbjct: 158 QARLTAIFPTIKFTVCPKADSLFKIVGAASIVAKVTRDRYV 198


>gi|148665343|gb|EDK97759.1| phosphatidylinositol glycan anchor biosynthesis, class Z [Mus
           musculus]
          Length = 799

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 80/181 (44%), Gaps = 40/181 (22%)

Query: 26  VAGIDEVGRGALAGPVVVA------AIILDPNNIPFGINDSKKISHKKREELYEK----- 74
           V G+DE GR  + GP+V A      + + DP  +   + DSK ++  +RE L+ K     
Sbjct: 30  VLGVDEAGRAPVLGPMVYAICYCPLSRLADPEALK--VADSKTLTENERERLFTKMEEDG 87

Query: 75  --------ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
                   + S  +ISIS        K+N++  + D     + N + IP S +     I 
Sbjct: 88  DFVGWSLDVLSPNLISISMLGRV---KYNLNSLSHDTAAELIWNARDIPGSIITALSGI- 143

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR------IAHKKYPDYGFDSHVGYP 180
                +     K DS+   ++AASI AKVTRD+ ++      I      DYG     GYP
Sbjct: 144 -----EVTVKAKADSLFPVVSAASIFAKVTRDKAVKNWQFVEILQDLDSDYG----SGYP 194

Query: 181 T 181
           +
Sbjct: 195 S 195


>gi|229152752|ref|ZP_04280936.1| Ribonuclease HIII [Bacillus cereus m1550]
 gi|228630730|gb|EEK87375.1| Ribonuclease HIII [Bacillus cereus m1550]
          Length = 337

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 33/202 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 241

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
             L  Q        +   KG+S+ L++AAASI+A+ +     D L + A    P  G   
Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 300

Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196
            V    AK  Q+V KE+ P  +
Sbjct: 301 QVDIAAAKLIQKVGKERLPEFV 322


>gi|21228916|ref|NP_634838.1| ribonuclease HII [Methanosarcina mazei Go1]
 gi|34395785|sp|Q8PTA3|RNH2_METMA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|20907449|gb|AAM32510.1| Ribonuclease [Methanosarcina mazei Go1]
          Length = 220

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 28/181 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-- 79
           +AGIDE G+G + GP+ +  + +D +        G+ DSKK++ KKRE+L  +I   A  
Sbjct: 3   IAGIDEAGKGPVIGPMCIGGVKIDESKAHILKVLGVADSKKLTPKKREQLASQIKKHADG 62

Query: 80  --IISISSASHQYIDK-HNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLPCQ- 132
             I  +S +    + K  ++++  +      +E L+   V   +A +      E+L  Q 
Sbjct: 63  YFIFEVSPSQIDELRKIMSMNEIMVVCFAKVLEQLKPDIVYADAADVKAERFAENLLRQY 122

Query: 133 ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
                         ++ + D+I   ++AASIIAKV RD L+    +   ++  D   GYP
Sbjct: 123 AKTSPDHAKKIKVVSMHQADAIYPVVSAASIIAKVRRDELIEELKR---EWCIDFGSGYP 179

Query: 181 T 181
           +
Sbjct: 180 S 180


>gi|30264624|ref|NP_847001.1| ribonuclease HIII [Bacillus anthracis str. Ames]
 gi|47530095|ref|YP_021444.1| ribonuclease HIII [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187446|ref|YP_030698.1| ribonuclease HIII [Bacillus anthracis str. Sterne]
 gi|165871447|ref|ZP_02216094.1| ribonuclease HIII [Bacillus anthracis str. A0488]
 gi|167641557|ref|ZP_02399804.1| ribonuclease HIII [Bacillus anthracis str. A0193]
 gi|170708703|ref|ZP_02899141.1| ribonuclease HIII [Bacillus anthracis str. A0389]
 gi|177653122|ref|ZP_02935409.1| ribonuclease HIII [Bacillus anthracis str. A0174]
 gi|190566898|ref|ZP_03019814.1| ribonuclease HIII [Bacillus anthracis Tsiankovskii-I]
 gi|227817338|ref|YP_002817347.1| ribonuclease HIII [Bacillus anthracis str. CDC 684]
 gi|229601632|ref|YP_002868834.1| ribonuclease HIII [Bacillus anthracis str. A0248]
 gi|254686953|ref|ZP_05150811.1| ribonuclease HIII [Bacillus anthracis str. CNEVA-9066]
 gi|254724517|ref|ZP_05186300.1| ribonuclease HIII [Bacillus anthracis str. A1055]
 gi|254736662|ref|ZP_05194368.1| ribonuclease HIII [Bacillus anthracis str. Western North America
           USA6153]
 gi|254741700|ref|ZP_05199387.1| ribonuclease HIII [Bacillus anthracis str. Kruger B]
 gi|254754703|ref|ZP_05206738.1| ribonuclease HIII [Bacillus anthracis str. Vollum]
 gi|254757535|ref|ZP_05209562.1| ribonuclease HIII [Bacillus anthracis str. Australia 94]
 gi|73917840|sp|Q81L36|RNH3_BACAN RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|254808009|sp|C3PAE4|RNH3_BACAA RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|254808010|sp|C3L8T2|RNH3_BACAC RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|30259282|gb|AAP28487.1| ribonuclease HIII [Bacillus anthracis str. Ames]
 gi|47505243|gb|AAT33919.1| ribonuclease HIII [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181373|gb|AAT56749.1| ribonuclease HIII [Bacillus anthracis str. Sterne]
 gi|164712744|gb|EDR18274.1| ribonuclease HIII [Bacillus anthracis str. A0488]
 gi|167510442|gb|EDR85841.1| ribonuclease HIII [Bacillus anthracis str. A0193]
 gi|170126383|gb|EDS95272.1| ribonuclease HIII [Bacillus anthracis str. A0389]
 gi|172081646|gb|EDT66717.1| ribonuclease HIII [Bacillus anthracis str. A0174]
 gi|190561889|gb|EDV15858.1| ribonuclease HIII [Bacillus anthracis Tsiankovskii-I]
 gi|227005114|gb|ACP14857.1| ribonuclease HIII [Bacillus anthracis str. CDC 684]
 gi|229266040|gb|ACQ47677.1| ribonuclease HIII [Bacillus anthracis str. A0248]
          Length = 311

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 35/187 (18%)

Query: 4   NSIPERPHFELEAMVREKNMWP--------VAGIDEVGRGALAGPVVVAAIILDPNNIP- 54
            ++P+ P   ++  V      P        + G DEVG G   GP+ V A+ +D   IP 
Sbjct: 67  QTVPQTPKIAVKKSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPL 126

Query: 55  ---FGINDSKKISHKK----REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYH- 106
               G+ DSK ++ ++     ++L   +  S+++  +   ++  DK N ++  L A+ H 
Sbjct: 127 LKELGVKDSKNLNDEQITAIAKQLLHVVPYSSLVLHNEKYNELFDKGN-NQGKLKALLHN 185

Query: 107 -AVENL-----QVIPRSALIDGRSIPED----LPCQ-------AFAVIKGDSISLSIAAA 149
            A+ NL        P   LID  + P+     L  Q        +   KG+S+ L++AAA
Sbjct: 186 KAITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENVYFATKGESVHLAVAAA 245

Query: 150 SIIAKVT 156
           SI+A+ +
Sbjct: 246 SILARYS 252


>gi|196034532|ref|ZP_03101941.1| ribonuclease HIII [Bacillus cereus W]
 gi|228929603|ref|ZP_04092621.1| Ribonuclease HIII [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|229124121|ref|ZP_04253313.1| Ribonuclease HIII [Bacillus cereus 95/8201]
 gi|195993074|gb|EDX57033.1| ribonuclease HIII [Bacillus cereus W]
 gi|228659423|gb|EEL15071.1| Ribonuclease HIII [Bacillus cereus 95/8201]
 gi|228829990|gb|EEM75609.1| Ribonuclease HIII [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 337

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 41/231 (17%)

Query: 5   SIPERPHFELEAMVREKNMWP--------VAGIDEVGRGALAGPVVVAAIILDPNNIP-- 54
           ++P+ P   ++  V      P        + G DEVG G   GP+ V A+ +D   IP  
Sbjct: 94  TVPQTPKIAVKKSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLL 153

Query: 55  --FGINDSKKISHKK----REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYH-- 106
              G+ DSK ++ ++     ++L   +  S+++  +   ++  DK N ++  L A+ H  
Sbjct: 154 KELGVKDSKNLNDEQITAIAKQLLHVVPYSSLVLHNEKYNELFDKGN-NQGKLKALLHNK 212

Query: 107 AVENLQ-----VIPRSALIDGRSIPED----LPCQ-------AFAVIKGDSISLSIAAAS 150
           A+ NL        P   LID  + P+     L  Q        +   KG+S+ L++AAAS
Sbjct: 213 AITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENVYFATKGESVHLAVAAAS 272

Query: 151 IIAKVT----RDRLMRIAHKKYPDYGFDSHVGYPTAKH-QQVIKEKGPSCI 196
           I+A+ +     D L + A    P  G    V    AK  Q++ KE+ P  +
Sbjct: 273 ILARYSFVKQFDELSKKAGMPLPK-GAGKQVDIAAAKLIQKLGKERLPEFV 322


>gi|65321922|ref|ZP_00394881.1| COG1039: Ribonuclease HIII [Bacillus anthracis str. A2012]
          Length = 337

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 35/186 (18%)

Query: 5   SIPERPHFELEAMVREKNMWP--------VAGIDEVGRGALAGPVVVAAIILDPNNIP-- 54
           ++P+ P   ++  V      P        + G DEVG G   GP+ V A+ +D   IP  
Sbjct: 94  TVPQTPKIAVKKSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLL 153

Query: 55  --FGINDSKKISHKK----REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYH-- 106
              G+ DSK ++ ++     ++L   +  S+++  +   ++  DK N ++  L A+ H  
Sbjct: 154 KELGVKDSKNLNDEQITAIAKQLLHVVPYSSLVLHNEKYNELFDKGN-NQGKLKALLHNK 212

Query: 107 AVENLQ-----VIPRSALIDGRSIPED----LPCQ-------AFAVIKGDSISLSIAAAS 150
           A+ NL        P   LID  + P+     L  Q        +   KG+S+ L++AAAS
Sbjct: 213 AITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENVYFATKGESVHLAVAAAS 272

Query: 151 IIAKVT 156
           I+A+ +
Sbjct: 273 ILARYS 278


>gi|242082852|ref|XP_002441851.1| hypothetical protein SORBIDRAFT_08g003480 [Sorghum bicolor]
 gi|241942544|gb|EES15689.1| hypothetical protein SORBIDRAFT_08g003480 [Sorghum bicolor]
          Length = 297

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 31/165 (18%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL--DPNNI--PFGINDSKKISHKKREELYE--KITSS- 78
           + GIDE GRG + GP+V   +      NN        DSK +  ++REEL+E  K+ SS 
Sbjct: 15  LMGIDEAGRGPVLGPMVYGCMYCARSYNNTLSTLKFADSKTLKEEQREELFESLKVNSSI 74

Query: 79  ----AIISISSASHQYIDKHNIHKATLDAIYH--------AVENLQVIPRSALIDGRSIP 126
                +I     S + + K  ++   L+ I H         V ++ ++     ID    P
Sbjct: 75  GWEVDVICPKDLSAKMLKKSKVN---LNEISHNSAMGLVRKVLDMGILLAEVYIDTVGDP 131

Query: 127 ED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMR 162
           E          P   F V K  DS+   ++ ASI+AKVTRDR +R
Sbjct: 132 EKYRIKLTEKFPGIKFVVAKKADSLYPVVSGASIVAKVTRDRALR 176


>gi|167635636|ref|ZP_02393948.1| ribonuclease HIII [Bacillus anthracis str. A0442]
 gi|170688262|ref|ZP_02879472.1| ribonuclease HIII [Bacillus anthracis str. A0465]
 gi|167529056|gb|EDR91811.1| ribonuclease HIII [Bacillus anthracis str. A0442]
 gi|170667768|gb|EDT18521.1| ribonuclease HIII [Bacillus anthracis str. A0465]
          Length = 332

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 35/185 (18%)

Query: 4   NSIPERPHFELEAMVREKNMWP--------VAGIDEVGRGALAGPVVVAAIILDPNNIP- 54
            ++P+ P   ++  V      P        + G DEVG G   GP+ V A+ +D   IP 
Sbjct: 88  QTVPQTPKIAVKKSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPL 147

Query: 55  ---FGINDSKKISHKK----REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYH- 106
               G+ DSK ++ ++     ++L   +  S+++  +   ++  DK N ++  L A+ H 
Sbjct: 148 LKELGVKDSKNLNDEQITAIAKQLLHVVPYSSLVLHNEKYNELFDKGN-NQGKLKALLHN 206

Query: 107 -AVENL-----QVIPRSALIDGRSIPED----LPCQ-------AFAVIKGDSISLSIAAA 149
            A+ NL        P   LID  + P+     L  Q        +   KG+S+ L++AAA
Sbjct: 207 KAITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENVYFATKGESVHLAVAAA 266

Query: 150 SIIAK 154
           SI+A+
Sbjct: 267 SILAR 271


>gi|229169283|ref|ZP_04296994.1| Ribonuclease HIII [Bacillus cereus AH621]
 gi|228614178|gb|EEK71292.1| Ribonuclease HIII [Bacillus cereus AH621]
          Length = 295

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 95/202 (47%), Gaps = 33/202 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT----S 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +  E+ +++      
Sbjct: 81  ILGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLHVVPY 140

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 141 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKIAPTKPEGILIDQFTQPDTYY 199

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
             L  Q        +   KG+S+ L++AAASI+A+ +     D L + A  + P  G   
Sbjct: 200 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMQLPK-GAGK 258

Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196
            V    AK  Q+V KE+ P  +
Sbjct: 259 QVDIAAAKLIQKVGKERLPEFV 280


>gi|163942287|ref|YP_001647171.1| ribonuclease HIII [Bacillus weihenstephanensis KBAB4]
 gi|226741380|sp|A9VJL6|RNH3_BACWK RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|163864484|gb|ABY45543.1| ribonuclease HIII [Bacillus weihenstephanensis KBAB4]
          Length = 312

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 95/202 (47%), Gaps = 33/202 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT----S 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +  E+ +++      
Sbjct: 97  ILGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLHVVPY 156

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKIAPTKPEGILIDQFTQPDTYY 215

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
             L  Q        +   KG+S+ L++AAASI+A+ +     D L + A  + P  G   
Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMQLPK-GAGK 274

Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196
            V    AK  Q+V KE+ P  +
Sbjct: 275 QVDIAAAKLIQKVGKERLPEFV 296


>gi|218232445|ref|YP_002369353.1| ribonuclease HIII [Bacillus cereus B4264]
 gi|218160402|gb|ACK60394.1| ribonuclease HIII [Bacillus cereus B4264]
          Length = 337

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 33/202 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++ ++     ++L   +  
Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPY 182

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 241

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
             L  Q        +   KG+S+ L++AAASI+A+ +     D L + A    P  G   
Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 300

Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196
            V    AK  Q++ KE+ P  +
Sbjct: 301 QVDIAAAKLIQKLGKERLPEFV 322


>gi|118479705|ref|YP_896856.1| ribonuclease HIII [Bacillus thuringiensis str. Al Hakam]
 gi|196044948|ref|ZP_03112182.1| ribonuclease HIII [Bacillus cereus 03BB108]
 gi|229186809|ref|ZP_04313964.1| Ribonuclease HIII [Bacillus cereus BGSC 6E1]
 gi|118418930|gb|ABK87349.1| ribonuclease HII [Bacillus thuringiensis str. Al Hakam]
 gi|196024436|gb|EDX63109.1| ribonuclease HIII [Bacillus cereus 03BB108]
 gi|228596546|gb|EEK54211.1| Ribonuclease HIII [Bacillus cereus BGSC 6E1]
          Length = 337

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 27/155 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++ ++     ++L   +  
Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPY 182

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 241

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154
             L  Q        +   KG+S+ L++AAASI+A+
Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 276


>gi|229192756|ref|ZP_04319714.1| Ribonuclease HIII [Bacillus cereus ATCC 10876]
 gi|228590595|gb|EEK48456.1| Ribonuclease HIII [Bacillus cereus ATCC 10876]
          Length = 332

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 33/202 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 177

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 178 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 236

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
             L  Q        +   KG+S+ L++AAASI+A+ +     D L++ A    P  G   
Sbjct: 237 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELIKKAGMPLPK-GAGK 295

Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196
            V    AK  Q++ KE+ P  +
Sbjct: 296 QVDIAAAKLIQKLGKERLPEFV 317


>gi|228935866|ref|ZP_04098676.1| Ribonuclease HIII [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228823634|gb|EEM69456.1| Ribonuclease HIII [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 337

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 27/155 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++ ++     ++L   +  
Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPY 182

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLTKIAPTKPEGVLIDQFTQPDTYY 241

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154
             L  Q        +   KG+S+ L++AAASI+A+
Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 276


>gi|145329613|ref|NP_001077956.1| ribonuclease HII family protein [Arabidopsis thaliana]
 gi|330252564|gb|AEC07658.1| Ribonuclease H2 subunit A [Arabidopsis thaliana]
          Length = 277

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 73/170 (42%), Gaps = 22/170 (12%)

Query: 26  VAGIDEVGRGALAGPVVVAA----IILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG + GP+V       I    +       DSK +  +KREELYE +     +
Sbjct: 16  LMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEEKREELYESLKLDKSL 75

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--------EDLPCQA 133
             +      ID   +    L  +     ++ V+   A +D    P        E  P   
Sbjct: 76  GWAV---DVIDPRELSAKMLAKVL----DMGVLLTEAYLDTVGDPDKYRIKLSERFPSIK 128

Query: 134 FAVIK-GDSISLSIAAASIIAKVTRDRLMR--IAHKKYPDYGFDSHVGYP 180
           F V K  DS+   ++ ASI+AKVTRDR ++  +  +   D   +   GYP
Sbjct: 129 FVVSKKADSLFPIVSGASIVAKVTRDRALKEWLVEETGEDINRNFGSGYP 178


>gi|229135388|ref|ZP_04264177.1| Ribonuclease HIII [Bacillus cereus BDRD-ST196]
 gi|228648084|gb|EEL04130.1| Ribonuclease HIII [Bacillus cereus BDRD-ST196]
          Length = 311

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 95/202 (47%), Gaps = 33/202 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT----S 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +  E+ +++      
Sbjct: 97  ILGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLHVVPY 156

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLTKIAPTKPEGILIDQFTQPDTYY 215

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
             L  Q        +   KG+S+ L++AAASI+A+ +     D L + A  + P  G   
Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMQLPK-GAGK 274

Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196
            V    AK  Q+V KE+ P  +
Sbjct: 275 QVDIAAAKLIQKVGKERLPEFV 296


>gi|52140950|ref|YP_085879.1| ribonuclease HIII [Bacillus cereus E33L]
 gi|81685974|sp|Q633N8|RNH3_BACCZ RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|51974419|gb|AAU15969.1| ribonuclease HII [Bacillus cereus E33L]
          Length = 311

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 27/157 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++ ++     ++L   +  
Sbjct: 97  IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPY 156

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKLAPTKPEGVLIDQFTQPDTYY 215

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT 156
             L  Q        +   KG+S+ L++AAASI+A+ +
Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYS 252


>gi|196017000|ref|XP_002118348.1| hypothetical protein TRIADDRAFT_51212 [Trichoplax adhaerens]
 gi|190579064|gb|EDV19170.1| hypothetical protein TRIADDRAFT_51212 [Trichoplax adhaerens]
          Length = 299

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 91/189 (48%), Gaps = 43/189 (22%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS----- 78
           GIDE GRG + G +V  A     +        G+ DSK ++   R+EL++KI S      
Sbjct: 32  GIDEAGRGPVLGAMVYGACYYPLSQSEKVKELGVADSKVLTEDMRDELFQKINSDDSVGW 91

Query: 79  --AIISISSASHQYI--DKHNI----HKATLDAIYHAVE-NLQVIPRSALIDGRSIPEDL 129
              IIS S  S + +   K+++    H A ++ I  +++  +QV  +   +D   + E+ 
Sbjct: 92  LVEIISPSDISTKMLARTKYSLNAVSHDAAINLIRQSIQKGVQV--KEIYVDTVGVAENY 149

Query: 130 PCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP--------DYG 172
             +   +          K D++   ++AASIIAKVTRD+++  ++ K+P        DYG
Sbjct: 150 QNKLSELFPDITIKVTPKADALFPCVSAASIIAKVTRDKVL--SNWKFPEDESYNSSDYG 207

Query: 173 FDSHVGYPT 181
                GYP+
Sbjct: 208 ----CGYPS 212


>gi|229087103|ref|ZP_04219253.1| Ribonuclease HIII [Bacillus cereus Rock3-44]
 gi|228696171|gb|EEL49006.1| Ribonuclease HIII [Bacillus cereus Rock3-44]
          Length = 338

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 96/202 (47%), Gaps = 33/202 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---- 77
           +AG DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +  E+ +++ +    
Sbjct: 123 IAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDVQIAEIAKQLLNVVPY 182

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 183 SSLVLHNEKYNEMFDKGN-NQGKLKALLHNKALTNLLKKIAPTKPEGILIDQFTQPDTYY 241

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
             L  Q        +   KG+S+ L++AAASI+A+ +     D L + A    P  G   
Sbjct: 242 KYLAKQKEVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 300

Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196
            V    AK  Q++ KE+ P  +
Sbjct: 301 QVDIAAAKLIQKLGKERLPEFV 322


>gi|42783728|ref|NP_980975.1| ribonuclease HIII [Bacillus cereus ATCC 10987]
 gi|73917841|sp|Q72ZI6|RNH3_BACC1 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|42739658|gb|AAS43583.1| ribonuclease HIII [Bacillus cereus ATCC 10987]
          Length = 311

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 33/202 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++ ++     ++L   +  
Sbjct: 97  IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPY 156

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTYY 215

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
             L  Q        +   KG+S+ L++AAASI+A+ +     D L + A    P  G   
Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 274

Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196
            V    AK  Q++ KE+ P  +
Sbjct: 275 QVDIAAAKLIQKLGKERLPEFV 296


>gi|18400719|ref|NP_565584.1| ribonuclease HII family protein [Arabidopsis thaliana]
 gi|49066054|sp|Q9SEZ6|RNH2A_ARATH RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
           AltName: Full=Ribonuclease HI large subunit; Short=RNase
           HI large subunit; AltName: Full=Ribonuclease HI subunit
           A
 gi|26450346|dbj|BAC42289.1| putative ribonuclease large subunit [Arabidopsis thaliana]
 gi|28973385|gb|AAO64017.1| putative ribonuclease large subunit [Arabidopsis thaliana]
 gi|330252563|gb|AEC07657.1| Ribonuclease H2 subunit A [Arabidopsis thaliana]
          Length = 296

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 27/182 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAA----IILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG + GP+V       I    +       DSK +  +KREELYE +     +
Sbjct: 16  LMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEEKREELYESLKLDKSL 75

Query: 82  SIS---------SASHQYIDKHNIHKATLDA---IYHAVENLQVIPRSALIDGRSIP--- 126
             +         SA     +K N+++ + ++   +   V ++ V+   A +D    P   
Sbjct: 76  GWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPDKY 135

Query: 127 -----EDLPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMR--IAHKKYPDYGFDSHVG 178
                E  P   F V K  DS+   ++ ASI+AKVTRDR ++  +  +   D   +   G
Sbjct: 136 RIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALKEWLVEETGEDINRNFGSG 195

Query: 179 YP 180
           YP
Sbjct: 196 YP 197


>gi|296505031|ref|YP_003666731.1| ribonuclease HIII [Bacillus thuringiensis BMB171]
 gi|296326083|gb|ADH09011.1| ribonuclease HIII [Bacillus thuringiensis BMB171]
          Length = 311

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 27/155 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++ ++     ++L   +  
Sbjct: 97  IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPY 156

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 215

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154
             L  Q        +   KG+S+ L++AAASI+A+
Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 250


>gi|225866529|ref|YP_002751907.1| ribonuclease HIII [Bacillus cereus 03BB102]
 gi|254808011|sp|C1ETZ4|RNH3_BACC3 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|225790928|gb|ACO31145.1| ribonuclease HIII [Bacillus cereus 03BB102]
          Length = 311

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 27/155 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++ ++     ++L   +  
Sbjct: 97  IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPY 156

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 215

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154
             L  Q        +   KG+S+ L++AAASI+A+
Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 250


>gi|228993279|ref|ZP_04153195.1| Ribonuclease HIII [Bacillus pseudomycoides DSM 12442]
 gi|228766347|gb|EEM14990.1| Ribonuclease HIII [Bacillus pseudomycoides DSM 12442]
          Length = 333

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 27/157 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---- 77
           +AG DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +  E+ +++ S    
Sbjct: 118 IAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLSVVPY 177

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  +K N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 178 SSLVLHNEKYNELFEKGN-NQGKLKALLHNKALTNLLKKIAPTKPEGILIDQFTQPDTYY 236

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT 156
             L  Q        +   KG+S+ L++AAASI+A+ +
Sbjct: 237 KYLTKQKEVQRENVYFATKGESVHLAVAAASILARYS 273


>gi|156101113|ref|XP_001616250.1| ribonuclease H1 large subunit  [Plasmodium vivax SaI-1]
 gi|148805124|gb|EDL46523.1| ribonuclease H1 large subunit , putative [Plasmodium vivax]
          Length = 288

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 88/188 (46%), Gaps = 42/188 (22%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI--- 80
           GIDE GRG + GP+V A    +  +        I+DSKKIS   RE ++ K+ +S++   
Sbjct: 20  GIDEAGRGPVLGPMVYAGFYCNKEHEKLLKEMKIDDSKKISEADREMMFHKLNNSSLPFG 79

Query: 81  ----------ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA-----LID--GR 123
                     IS      Q   K+N+++ + D     ++   VI R        +D  G+
Sbjct: 80  WRIHVLMPQDISAKMLKKQ---KYNLNEISHDTAISIID--HVISRGCNLTEVFVDTVGK 134

Query: 124 -SIPEDLPCQAFAVIK------GDSISLSIAAASIIAKVTRDRLMRIAHKKYP----DYG 172
            S+ E+   + F  IK       DS+   ++AASI AKVTRD L++    + P    D G
Sbjct: 135 PSVYEEKLKRLFPHIKCTVKEKADSLYPVVSAASICAKVTRDFLIKKWKYEEPLVNIDKG 194

Query: 173 FDSHVGYP 180
           F S  GYP
Sbjct: 195 FGS--GYP 200


>gi|228948280|ref|ZP_04110563.1| Ribonuclease HIII [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228811267|gb|EEM57605.1| Ribonuclease HIII [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 332

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 27/155 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++ ++     ++L   +  
Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPY 177

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 178 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLTKIAPTKPEGVLIDQFTQPDTYY 236

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154
             L  Q        +   KG+S+ L++AAASI+A+
Sbjct: 237 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 271


>gi|49478678|ref|YP_038604.1| ribonuclease HIII [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|73917843|sp|Q6HCX2|RNH3_BACHK RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|49330234|gb|AAT60880.1| ribonuclease HII [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 311

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 27/155 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++ ++     ++L   +  
Sbjct: 97  IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPY 156

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLTKIAPTKPEGVLIDQFTQPDTYY 215

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154
             L  Q        +   KG+S+ L++AAASI+A+
Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 250


>gi|86171485|ref|XP_966221.1| ribonuclease HII, putative [Plasmodium falciparum 3D7]
 gi|46361187|emb|CAG25051.1| ribonuclease HII, putative [Plasmodium falciparum 3D7]
          Length = 288

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 83/183 (45%), Gaps = 32/183 (17%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI--- 80
           GIDE GRG + GP+V +    +  +        I+DSKKI+   RE+++ K+ +S +   
Sbjct: 20  GIDEAGRGPVLGPMVYSGFYCNKEHEKLLKEMKIDDSKKITEADREKMFVKLNNSKLPFG 79

Query: 81  ----------ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID--GR-SIPE 127
                     IS      Q  + + I   T  +I   V N         +D  G+ S+ E
Sbjct: 80  WRVHILLPQDISAKMLKKQKYNLNEISHDTAISIIEHVINRGCNLTEVFVDTVGKASVYE 139

Query: 128 DLPCQAFAVIK------GDSISLSIAAASIIAKVTRDRLMRIAHKKYP----DYGFDSHV 177
           +   + F  IK       DS+   ++AASI AKVTRD L++    + P    D GF S  
Sbjct: 140 EKLQKMFPHIKCTVKEKADSLYPVVSAASICAKVTRDFLLKKWKYEEPIINIDNGFGS-- 197

Query: 178 GYP 180
           GYP
Sbjct: 198 GYP 200


>gi|228917194|ref|ZP_04080751.1| Ribonuclease HIII [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228842395|gb|EEM87486.1| Ribonuclease HIII [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 332

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 27/155 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++ ++     ++L   +  
Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPY 177

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 178 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTYY 236

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154
             L  Q        +   KG+S+ L++AAASI+A+
Sbjct: 237 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 271


>gi|255549406|ref|XP_002515756.1| ribonuclease hi large subunit, putative [Ricinus communis]
 gi|223545084|gb|EEF46595.1| ribonuclease hi large subunit, putative [Ricinus communis]
          Length = 299

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 31/165 (18%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSSA-- 79
           + GIDE GRG + GP+V   +      +         DSK +   KREEL+E + ++   
Sbjct: 18  IMGIDEAGRGPVLGPMVYGCLYCARSYERTLSTLSFADSKTLKEDKREELFENLKANESI 77

Query: 80  -----IISISSASHQYIDKHNIHKATLDAIYHA--------VENLQVIPRSALIDGRS-- 124
                +I     S + + K+ I+   L+ I H         V N  V+     +D     
Sbjct: 78  GWAVDVIDPRELSAKMLQKNKIN---LNEISHESAIGLITRVLNEGVLLTQVYLDTVGDA 134

Query: 125 ------IPEDLPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMR 162
                 + E  P   F V K  DS+   ++ ASI+AKVTRDR +R
Sbjct: 135 EKYRIKLSERFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALR 179


>gi|242094016|ref|XP_002437498.1| hypothetical protein SORBIDRAFT_10g028180 [Sorghum bicolor]
 gi|241915721|gb|EER88865.1| hypothetical protein SORBIDRAFT_10g028180 [Sorghum bicolor]
          Length = 297

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 84/187 (44%), Gaps = 37/187 (19%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL--DPNNI--PFGINDSKKISHKKREELYE--KITSS- 78
           + GIDE GRG + GP+V   +      NN        DSK +  ++REEL+E  K+ SS 
Sbjct: 15  LMGIDEAGRGPVLGPMVYGCMYCARSYNNTLATLKFADSKTLKEEQREELFESLKVNSSI 74

Query: 79  ----AIISISSASHQYIDKHNIHKATLDAIYH--------AVENLQVIPRSALIDGRSIP 126
                +I     S + + K  ++   L+ I H         + ++ V+     ID    P
Sbjct: 75  GWEVDVICPKDLSAKMLRKSKVN---LNEISHNSAMGLVRKLLDMGVLLAEVYIDTVGDP 131

Query: 127 ED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
           E          P   F V K  DS+   ++ ASI+AKVTRDR +R  +  + +   + H+
Sbjct: 132 EKYRIKLTEKFPGIKFVVAKKADSLYPVVSGASIVAKVTRDRALR--NWVFDETALNMHM 189

Query: 178 ----GYP 180
               GYP
Sbjct: 190 KTGSGYP 196


>gi|332797850|ref|YP_004459350.1| ribonuclease HII [Acidianus hospitalis W1]
 gi|332695585|gb|AEE95052.1| ribonuclease HII [Acidianus hospitalis W1]
          Length = 192

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 24/188 (12%)

Query: 41  VVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITSSAIISISSASH-QYIDKHN 95
           +V+A +I+D          G+ DSK +S +KRE+L+E I+  A   I + ++   ID  N
Sbjct: 1   MVIAGVIIDEKIEGMLKEVGVKDSKILSREKREKLFEIISEFAEAYIVNKAYPNEIDSSN 60

Query: 96  IHKATLDAIYHAV-ENLQVIPRSALIDGRSIPE-------DLPCQAFAVIKGDSISLSIA 147
           +++ T   +   +  +L + P+   ID     +       +L  +   V   D   +  +
Sbjct: 61  LNELTYSKVIQIIYASLPLHPKIVTIDKVGNEDIVIMKIRELGLKDNVVFNADVKYIEAS 120

Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----TAKHQQVIKEK---GPSCIHRLT 200
           AASIIAKVTRDR++    K Y D+G     GYP    T K    I EK    P  I R T
Sbjct: 121 AASIIAKVTRDRIIDSLKKIYGDFG----SGYPSDPKTRKWIIEIYEKDKNNPPPIIRRT 176

Query: 201 FRPLRNLS 208
           ++ L  ++
Sbjct: 177 WKTLLKIA 184


>gi|228923300|ref|ZP_04086588.1| Ribonuclease HIII [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228836254|gb|EEM81607.1| Ribonuclease HIII [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 337

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 33/202 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 241

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
             L  Q        +   KG+S+ L++AAASI+A+ +     D L + A    P  G   
Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GASK 300

Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196
            V    AK  Q++ KE+ P  +
Sbjct: 301 QVDIAAAKLIQKLGKERLPEFV 322


>gi|228960825|ref|ZP_04122460.1| Ribonuclease HIII [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228798847|gb|EEM45826.1| Ribonuclease HIII [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 332

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 27/155 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 177

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 178 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 236

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154
             L  Q        +   KG+S+ L++AAASI+A+
Sbjct: 237 KYLAKQKQVQRENVYFTTKGESVHLAVAAASILAR 271


>gi|228974659|ref|ZP_04135225.1| Ribonuclease HIII [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228785062|gb|EEM33075.1| Ribonuclease HIII [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
          Length = 337

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 33/202 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 241

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
             L  Q        +   KG+S+ L++AAASI+A+ +     D L + A    P  G   
Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 300

Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196
            V    AK  Q++ KE+ P  +
Sbjct: 301 QVDIAAAKLIQKLGKERLPEFV 322


>gi|228941735|ref|ZP_04104282.1| Ribonuclease HIII [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228981253|ref|ZP_04141553.1| Ribonuclease HIII [Bacillus thuringiensis Bt407]
 gi|228778453|gb|EEM26720.1| Ribonuclease HIII [Bacillus thuringiensis Bt407]
 gi|228817947|gb|EEM64025.1| Ribonuclease HIII [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 332

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 33/202 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 177

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 178 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 236

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
             L  Q        +   KG+S+ L++AAASI+A+ +     D L + A    P  G   
Sbjct: 237 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 295

Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196
            V    AK  Q++ KE+ P  +
Sbjct: 296 QVDIAAAKLIQKLGKERLPEFV 317


>gi|196042128|ref|ZP_03109412.1| ribonuclease HIII [Bacillus cereus NVH0597-99]
 gi|229093650|ref|ZP_04224750.1| Ribonuclease HIII [Bacillus cereus Rock3-42]
 gi|196027064|gb|EDX65687.1| ribonuclease HIII [Bacillus cereus NVH0597-99]
 gi|228689737|gb|EEL43544.1| Ribonuclease HIII [Bacillus cereus Rock3-42]
          Length = 337

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 27/155 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 241

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154
             L  Q        +   KG+S+ L++AAASI+A+
Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 276


>gi|221057860|ref|XP_002261438.1| ribonuclease H1 large subunit [Plasmodium knowlesi strain H]
 gi|194247443|emb|CAQ40843.1| ribonuclease H1 large subunit, putative [Plasmodium knowlesi strain
           H]
          Length = 288

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 80/184 (43%), Gaps = 34/184 (18%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI--- 80
           GIDE GRG + GP+V A    +  +        I+DSKKIS   RE ++ K+ +S +   
Sbjct: 20  GIDEAGRGPVLGPMVYAGFYCNKEHEKLLKEMKIDDSKKISEADREMMFHKLNNSKLPFG 79

Query: 81  ----------ISISSASHQYIDKHNI-HKATLDAIYHAVE---NLQVIPRSALIDGRSIP 126
                     IS      Q  + + I H   +  I H +    NL  +    +       
Sbjct: 80  WRIHVLMPQDISAKMLKKQKYNLNEISHDTAISIINHVISRGCNLTEVFVDTVGKANVYE 139

Query: 127 EDLPCQAFAVIK------GDSISLSIAAASIIAKVTRDRLMRIAHKKYP----DYGFDSH 176
           E L  + F  IK       DS+   ++AASI AKVTRD L++    + P    D GF S 
Sbjct: 140 EKL-TKLFPHIKCTVREKADSLYPVVSAASICAKVTRDFLIKKWKYEEPLVNIDKGFGS- 197

Query: 177 VGYP 180
            GYP
Sbjct: 198 -GYP 200


>gi|229129840|ref|ZP_04258806.1| Ribonuclease HIII [Bacillus cereus BDRD-Cer4]
 gi|228653531|gb|EEL09403.1| Ribonuclease HIII [Bacillus cereus BDRD-Cer4]
          Length = 337

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 27/155 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 241

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154
             L  Q        +   KG+S+ L++AAASI+A+
Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 276


>gi|229048264|ref|ZP_04193832.1| Ribonuclease HIII [Bacillus cereus AH676]
 gi|229147115|ref|ZP_04275474.1| Ribonuclease HIII [Bacillus cereus BDRD-ST24]
 gi|228636364|gb|EEK92835.1| Ribonuclease HIII [Bacillus cereus BDRD-ST24]
 gi|228722989|gb|EEL74366.1| Ribonuclease HIII [Bacillus cereus AH676]
          Length = 337

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 33/202 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 241

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
             L  Q        +   KG+S+ L++AAASI+A+ +     D L + A    P  G   
Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 300

Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196
            V    AK  Q++ KE+ P  +
Sbjct: 301 QVDIAAAKLIQKLGKERLPEFV 322


>gi|229158161|ref|ZP_04286229.1| Ribonuclease HIII [Bacillus cereus ATCC 4342]
 gi|228625323|gb|EEK82082.1| Ribonuclease HIII [Bacillus cereus ATCC 4342]
          Length = 337

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 27/155 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 241

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154
             L  Q        +   KG+S+ L++AAASI+A+
Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 276


>gi|228903073|ref|ZP_04067210.1| Ribonuclease HIII [Bacillus thuringiensis IBL 4222]
 gi|228856559|gb|EEN01082.1| Ribonuclease HIII [Bacillus thuringiensis IBL 4222]
          Length = 337

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 27/155 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKSLNDDQITAIAKQLLHVVPY 182

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLGKMAPTKPEGVLIDQFTQPDTYY 241

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154
             L  Q        +   KG+S+ L++AAASI+A+
Sbjct: 242 KYLTKQKQVQRENVYFATKGESVHLAVAAASILAR 276


>gi|229072058|ref|ZP_04205267.1| Ribonuclease HIII [Bacillus cereus F65185]
 gi|228710992|gb|EEL62958.1| Ribonuclease HIII [Bacillus cereus F65185]
          Length = 337

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 33/202 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 241

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
             L  Q        +   KG+S+ L++AAASI+A+ +     D L + A    P  G   
Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 300

Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196
            V    AK  Q++ KE+ P  +
Sbjct: 301 QVDIAAAKLIQKLGKERLPEFV 322


>gi|228967653|ref|ZP_04128674.1| Ribonuclease HIII [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228792029|gb|EEM39610.1| Ribonuclease HIII [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 332

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 27/155 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 177

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 178 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLGKMAPTKPEGVLIDQFTQPDTYY 236

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154
             L  Q        +   KG+S+ L++AAASI+A+
Sbjct: 237 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 271


>gi|301056063|ref|YP_003794274.1| ribonuclease HIII [Bacillus anthracis CI]
 gi|300378232|gb|ADK07136.1| ribonuclease HIII [Bacillus cereus biovar anthracis str. CI]
          Length = 311

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 27/157 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++ ++     ++L   +  
Sbjct: 97  IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPY 156

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPDGVLIDQFTQPDTYY 215

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT 156
             L  Q        +   KG+S+ L++AAASI+A+ +
Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYS 252


>gi|218899710|ref|YP_002448121.1| ribonuclease HIII [Bacillus cereus G9842]
 gi|218544745|gb|ACK97139.1| ribonuclease HIII [Bacillus cereus G9842]
          Length = 332

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 27/155 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 177

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 178 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLGKMAPTKPEGVLIDQFTQPDTYY 236

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154
             L  Q        +   KG+S+ L++AAASI+A+
Sbjct: 237 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 271


>gi|228910380|ref|ZP_04074195.1| Ribonuclease HIII [Bacillus thuringiensis IBL 200]
 gi|228849146|gb|EEM93985.1| Ribonuclease HIII [Bacillus thuringiensis IBL 200]
          Length = 332

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 27/155 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 177

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 178 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 236

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154
             L  Q        +   KG+S+ L++AAASI+A+
Sbjct: 237 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 271


>gi|324328447|gb|ADY23707.1| ribonuclease HIII [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 311

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 27/157 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 97  IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 156

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 215

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT 156
             L  Q        +   KG+S+ L++AAASI+A+ +
Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYS 252


>gi|30022631|ref|NP_834262.1| ribonuclease HIII [Bacillus cereus ATCC 14579]
 gi|73917842|sp|Q817J0|RNH3_BACCR RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|29898189|gb|AAP11463.1| Ribonuclease HII [Bacillus cereus ATCC 14579]
          Length = 311

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 33/202 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 97  IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 156

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 215

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
             L  Q        +   KG+S+ L++AAASI+A+ +     D L + A    P  G   
Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 274

Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196
            V    AK  Q++ KE+ P  +
Sbjct: 275 QVDIAAAKLIQKLGKERLPEFV 296


>gi|326942340|gb|AEA18236.1| ribonuclease HIII [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 311

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 33/202 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 97  IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 156

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 215

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
             L  Q        +   KG+S+ L++AAASI+A+ +     D L + A    P  G   
Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 274

Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196
            V    AK  Q++ KE+ P  +
Sbjct: 275 QVDIAAAKLIQKLGKERLPEFV 296


>gi|229175263|ref|ZP_04302778.1| Ribonuclease HIII [Bacillus cereus MM3]
 gi|228608095|gb|EEK65402.1| Ribonuclease HIII [Bacillus cereus MM3]
          Length = 332

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 27/155 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 177

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 178 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTYY 236

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154
             L  Q        +   KG+S+ L++AAASI+A+
Sbjct: 237 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 271


>gi|228987805|ref|ZP_04147914.1| Ribonuclease HIII [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228771853|gb|EEM20310.1| Ribonuclease HIII [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 337

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 33/202 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 241

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
             L  Q        +   KG+S+ L++AAASI+A+ +     D L + A    P  G   
Sbjct: 242 KYLAKQKLVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 300

Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196
            V    AK  Q++ KE+ P  +
Sbjct: 301 QVDIAAAKLIQKLGKERLPEFV 322


>gi|229026003|ref|ZP_04182387.1| Ribonuclease HIII [Bacillus cereus AH1272]
 gi|228735284|gb|EEL85895.1| Ribonuclease HIII [Bacillus cereus AH1272]
          Length = 332

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 27/155 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 177

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 178 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTYY 236

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154
             L  Q        +   KG+S+ L++AAASI+A+
Sbjct: 237 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 271


>gi|229019776|ref|ZP_04176579.1| Ribonuclease HIII [Bacillus cereus AH1273]
 gi|228741501|gb|EEL91698.1| Ribonuclease HIII [Bacillus cereus AH1273]
          Length = 337

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 27/155 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTYY 241

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154
             L  Q        +   KG+S+ L++AAASI+A+
Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 276


>gi|229112020|ref|ZP_04241563.1| Ribonuclease HIII [Bacillus cereus Rock1-15]
 gi|228671343|gb|EEL26644.1| Ribonuclease HIII [Bacillus cereus Rock1-15]
          Length = 337

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 27/155 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 241

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154
             L  Q        +   KG+S+ L++AAASI+A+
Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 276


>gi|229180875|ref|ZP_04308210.1| Ribonuclease HIII [Bacillus cereus 172560W]
 gi|228602432|gb|EEK59918.1| Ribonuclease HIII [Bacillus cereus 172560W]
          Length = 337

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 27/157 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 241

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT 156
             L  Q        +   KG+S+ L++AAASI+A+ +
Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYS 278


>gi|206969869|ref|ZP_03230823.1| ribonuclease HIII [Bacillus cereus AH1134]
 gi|206735557|gb|EDZ52725.1| ribonuclease HIII [Bacillus cereus AH1134]
          Length = 311

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 33/202 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 97  IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 156

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 215

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
             L  Q        +   KG+S+ L++AAASI+A+ +     D L + A    P  G   
Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 274

Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196
            V    AK  Q++ KE+ P  +
Sbjct: 275 QVDIAAAKLIQKLGKERLPEFV 296


>gi|228954825|ref|ZP_04116845.1| Ribonuclease HIII [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228804814|gb|EEM51413.1| Ribonuclease HIII [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 337

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 33/202 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQIIAIAKQLLHVVPY 182

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 241

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
             L  Q        +   KG+S+ L++AAASI+A+ +     D L + A    P  G   
Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 300

Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196
            V    AK  Q++ KE+ P  +
Sbjct: 301 QVDIAAAKLIQKLGKERLPEFV 322


>gi|229081809|ref|ZP_04214301.1| Ribonuclease HIII [Bacillus cereus Rock4-2]
 gi|228701397|gb|EEL53891.1| Ribonuclease HIII [Bacillus cereus Rock4-2]
          Length = 332

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 33/202 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 177

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 178 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 236

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
             L  Q        +   KG+S+ L++AAASI+A+ +     D L + A    P  G   
Sbjct: 237 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 295

Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196
            V    AK  Q++ KE+ P  +
Sbjct: 296 QVDIAAAKLIQKLGKERLPEFV 317


>gi|229032202|ref|ZP_04188175.1| Ribonuclease HIII [Bacillus cereus AH1271]
 gi|228728982|gb|EEL79985.1| Ribonuclease HIII [Bacillus cereus AH1271]
          Length = 337

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 27/157 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKKIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTYY 241

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT 156
             L  Q        +   KG+S+ L++AAASI+A+ +
Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYS 278


>gi|255640332|gb|ACU20454.1| unknown [Glycine max]
          Length = 219

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 31/165 (18%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYE--KITSSA 79
           V GIDE GRG + GP+V   +    + +         DSK +  +KREEL+E  K+  S 
Sbjct: 15  VMGIDEAGRGPVLGPMVYGCLYCSQSYLKTLSTLSFADSKTLKEEKREELFETLKLNDSI 74

Query: 80  -----IISISSASHQYIDKHNIHKATLDAIYHA--------VENLQVIPRSALID----- 121
                +I     S + + K+ I+   L+ I H+        V  + V+     ID     
Sbjct: 75  GWDVDVIDPRELSAKMLKKNKIN---LNEISHSSAMGLIDRVLKMGVLLTEVYIDTVGDA 131

Query: 122 GR---SIPEDLPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMR 162
           G+    +    P   F V K  DS+   ++ ASI+AKVTRDR  R
Sbjct: 132 GKYEMKLSNSFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRASR 176


>gi|170016688|ref|YP_001727607.1| ribonuclease H [Leuconostoc citreum KM20]
 gi|238688947|sp|B1MXB1|RNH3_LEUCK RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|169803545|gb|ACA82163.1| Ribonuclease H [Leuconostoc citreum KM20]
          Length = 308

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 29/171 (16%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA 79
           W V G DEVG GA  GP+  AA+ +  N++ +    GI DSK ++  K  ++  +I    
Sbjct: 93  WSVIGSDEVGAGAYFGPLTTAAVFVSKNDLDWVKALGIADSKTLTDAKMRDIAPEIIQRL 152

Query: 80  ---IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA--- 133
              ++++    +  +  HN +   L AI H     +V+ + A I   +I  D   QA   
Sbjct: 153 PHHVVNLLPEKYNALQPHN-NVNQLKAISHNFALHKVLEKIAPITPDAILIDQFAQATTY 211

Query: 134 -----------------FAVIKGDSISLSIAAASIIAKVTR-DRLMRIAHK 166
                            +   KG+   LS+AAASI+A+V   D ++ ++H+
Sbjct: 212 FNYLSKAQQSPVIRQNVYFTTKGEQYHLSVAAASILARVVELDTMVALSHE 262


>gi|228999329|ref|ZP_04158909.1| Ribonuclease HIII [Bacillus mycoides Rock3-17]
 gi|228760526|gb|EEM09492.1| Ribonuclease HIII [Bacillus mycoides Rock3-17]
          Length = 338

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 96/202 (47%), Gaps = 33/202 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---- 77
           +AG DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +  E+ +++ +    
Sbjct: 123 IAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLNVVPY 182

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSIPED-- 128
           S+++  +   ++  +K N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 183 SSLVLHNEKYNELFEKGN-NQGKLKALLHNKALTNLLKKIAPTKPEGILIDQFTQPDTYY 241

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
             L  Q        +   KG+S+ L++AAASI+A+ +     D L + A    P  G   
Sbjct: 242 KYLTKQKEVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 300

Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196
            V    AK  Q++ KE+ P  +
Sbjct: 301 QVDIAAAKLIQKLGKERLPEFV 322


>gi|118355616|ref|XP_001011067.1| ribonuclease HII family protein [Tetrahymena thermophila]
 gi|89292834|gb|EAR90822.1| ribonuclease HII family protein [Tetrahymena thermophila SB210]
          Length = 284

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 90/195 (46%), Gaps = 32/195 (16%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVV----VAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           ++KN+  V GIDE GRG + GP+V    V  I  +P     G NDSK+++ +KR++LY +
Sbjct: 7   KKKNLDWVMGIDEAGRGPVLGPMVYGCCVWPIQYEPELKLEGFNDSKQLTEQKRDQLYAR 66

Query: 75  ITSSA---------IISISSASHQYIDKH--NIHKATLDAIYHAVEN------------L 111
           +             I+S    S++ + K+  ++++ + +A Y  +++            L
Sbjct: 67  MEELKNDKLYFEVRILSAEFLSNRMLAKNRDSLNELSFNAAYSLIDSVMSQGFNVTQVFL 126

Query: 112 QVIPRSALIDGRSIPE---DLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
             + +      +   +     P   F V  K D+    + AASI AKVTRD  +     +
Sbjct: 127 DTVGKEETYQAKLYQDYKYTYPQLKFTVSSKADAKFPVVGAASICAKVTRDLQITNNDMR 186

Query: 168 YP-DYGFDSHVGYPT 181
            P D    +  GYP+
Sbjct: 187 EPLDLSKATGSGYPS 201


>gi|229006884|ref|ZP_04164516.1| Ribonuclease HIII [Bacillus mycoides Rock1-4]
 gi|228754377|gb|EEM03790.1| Ribonuclease HIII [Bacillus mycoides Rock1-4]
          Length = 333

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 96/202 (47%), Gaps = 33/202 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---- 77
           +AG DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +  E+ +++ +    
Sbjct: 118 IAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLNVVPY 177

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  +K N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 178 SSLVLHNEKYNELFEKGN-NQGKLKALLHNKALTNLLKKIAPTKPEGILIDQFTQPDTYY 236

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
             L  Q        +   KG+S+ L++AAASI+A+ +     D L + A    P  G   
Sbjct: 237 KYLTKQKEVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 295

Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196
            V    AK  Q++ KE+ P  +
Sbjct: 296 QVDIAAAKLIQKLGKERLPEFV 317


>gi|229062239|ref|ZP_04199561.1| Ribonuclease HIII [Bacillus cereus AH603]
 gi|228717067|gb|EEL68746.1| Ribonuclease HIII [Bacillus cereus AH603]
          Length = 312

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 33/202 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT----S 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +  E+ +++      
Sbjct: 97  ILGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLHVVPY 156

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKIAPTKPEGILIDQFTQPDTYY 215

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
             L  Q        +   KG+S+ L++AAASI+A+ +     D L + A    P  G   
Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 274

Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196
            V    AK  Q+V KE+ P  +
Sbjct: 275 QVDIAAAKLIQKVGKERLPEFV 296


>gi|145640736|ref|ZP_01796319.1| ribonuclease HII [Haemophilus influenzae R3021]
 gi|145274662|gb|EDK14525.1| ribonuclease HII [Haemophilus influenzae 22.4-21]
          Length = 56

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 29/41 (70%)

Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
          +AG+DEVGRG L G VV AA+ILDPNN   G+ DSK    K
Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKNFLRK 51


>gi|68067767|ref|XP_675818.1| ribonuclease H1 large subunit [Plasmodium berghei strain ANKA]
 gi|56495218|emb|CAH97375.1| ribonuclease H1 large subunit, putative [Plasmodium berghei]
          Length = 288

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 81/185 (43%), Gaps = 36/185 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI--- 80
           GIDE GRG + GP+V +       +        I+DSKKI+   RE+++ K+ +S +   
Sbjct: 20  GIDEAGRGPVLGPMVYSGFYCKKEDEKLLKEMKIDDSKKITEHDREKMFYKLNNSKLPFA 79

Query: 81  ----------ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID--GR-SIPE 127
                     IS      Q  + + I   T  +I   V N         +D  G+ S+ E
Sbjct: 80  WRVHILMPQDISAKMLKRQKYNLNEISHDTAISIIQHVLNRGCNLTEVFVDTVGKASVYE 139

Query: 128 DLPCQAFAVIK------GDSISLSIAAASIIAKVTRDRLMRIAHKKYP------DYGFDS 175
           +   + F  IK       DS+   ++AASI AKVTRD L  I   KY       D GF S
Sbjct: 140 EKLQKLFPNIKCVVKEKADSLYPVVSAASICAKVTRDFL--IKKWKYEEHIINIDKGFGS 197

Query: 176 HVGYP 180
             GYP
Sbjct: 198 --GYP 200


>gi|226500696|ref|NP_001152248.1| ribonuclease HI large subunit [Zea mays]
 gi|195654267|gb|ACG46601.1| ribonuclease HI large subunit [Zea mays]
          Length = 284

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 74/165 (44%), Gaps = 30/165 (18%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL--DPNNI--PFGINDSKKISHKKREELYE--KITSSA 79
           + GIDE GRG + GP+V   +      NN        DSK +  ++REEL+E  K+ SS 
Sbjct: 15  LMGIDEAGRGPVLGPMVYGCMYCAYSYNNTLATLKFADSKTLKEEQREELFESLKVNSSI 74

Query: 80  -----IISISSASHQYIDKHNIHKATLDAIYH--------AVENLQVIPRSALIDGRSIP 126
                +I     S + + K +  K  L+ I H         V  + V+     +D    P
Sbjct: 75  RWEVDVICPKDISAKMLKKKS--KVNLNEISHNSAMGLVRKVLRMGVLLAEVYVDTVGDP 132

Query: 127 EDLPCQ--------AFAVIK-GDSISLSIAAASIIAKVTRDRLMR 162
           E    +         F V K  DS+   I+ ASI+AKVTRDR +R
Sbjct: 133 EKYRTKLTEKFIGIKFVVAKKADSLYPVISGASIVAKVTRDRALR 177


>gi|229163546|ref|ZP_04291496.1| Ribonuclease HIII [Bacillus cereus R309803]
 gi|228619928|gb|EEK76804.1| Ribonuclease HIII [Bacillus cereus R309803]
          Length = 332

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 27/157 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +     ++L   +  
Sbjct: 118 IVGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 177

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 178 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 236

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT 156
             L  Q        +   KG+S+ L++AAASI+A+ +
Sbjct: 237 KYLAKQKEVQRENVYFATKGESVHLAVAAASILARYS 273


>gi|289582357|ref|YP_003480823.1| ribonuclease HII [Natrialba magadii ATCC 43099]
 gi|289531910|gb|ADD06261.1| ribonuclease HII [Natrialba magadii ATCC 43099]
          Length = 221

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 24/186 (12%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAIISISSA 86
           G+DE G+G + G +  AA+ ++   + P GI DSK+++  +R+EL   +     I +  A
Sbjct: 4   GVDEAGKGPVLGSMFAAAVHVERETVLPDGIADSKRLTPARRDELAATLREDDRIGVGVA 63

Query: 87  --SHQYIDKHNIHKATLDAIYHAVENLQVI--------PRSALIDGRSIPED-------- 128
             +   ID       +L    HA E ++ +        P + L D      D        
Sbjct: 64  EITTAQIDDPETDMNSLSVRAHA-EAIEAVAADTVLEAPITGLCDACDTDADRFARRVAD 122

Query: 129 ---LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
              L C   A    D  S  + AASIIAKV RD  +      +PD G     GYP+  + 
Sbjct: 123 RCGLECTISAEHGADDDSPIVGAASIIAKVERDTHVESVSAAFPDCG-PVGSGYPSDPNT 181

Query: 186 QVIKEK 191
           +   E 
Sbjct: 182 RAFLES 187


>gi|262200028|ref|YP_003271237.1| ribonuclease HII/HIII [Haliangium ochraceum DSM 14365]
 gi|262083375|gb|ACY19344.1| ribonuclease HII/HIII [Haliangium ochraceum DSM 14365]
          Length = 246

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 29/185 (15%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKI-----SHKKREELYEKITSS 78
           GIDE GRG + GP+V+AA+ LD     +    G+ DSK       +   R EL  ++++ 
Sbjct: 19  GIDEAGRGPVLGPMVMAAVCLDSGGARWLTRTGVRDSKAFGASSKARSARAELAAEVSAR 78

Query: 79  AIISISSASHQYID----KHNIHKATLDAIYHAVENLQVIPRSALIDG---------RSI 125
           A+     A  Q ID       + +  L+ +   +   Q+I R+  +D          R +
Sbjct: 79  AV----HAEVQVIDVAVIDRRVRRHELNLLEREIAE-QLIARAPAVDAIIADGKNLFRPL 133

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR-IAHKKYPDYGFDSHVGYPTAKH 184
            +  P    A   G++   S+AAASI+AK  RD L   IA +  P +G     GY     
Sbjct: 134 SQRYP-HLEACDGGEARHASVAAASILAKHRRDELFACIAQRYQPLFGELRGGGYVNEAT 192

Query: 185 QQVIK 189
           ++ ++
Sbjct: 193 RRFLR 197


>gi|198428317|ref|XP_002127465.1| PREDICTED: similar to ribonuclease H2, large subunit [Ciona
           intestinalis]
          Length = 292

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 78/181 (43%), Gaps = 29/181 (16%)

Query: 28  GIDEVGRGALAGPVVVAA----IILDPNNIPFGINDSKKISHKKREELYEK--------- 74
           GIDE GRG + GP+V A+    I         G +DSK +  ++RE L+E          
Sbjct: 32  GIDEAGRGPVLGPMVYASCFTPISCKDKLAGLGCDDSKVLKEEQRESLFETLNKASEYIG 91

Query: 75  ----ITSSAIISISSASHQYIDKHNI-HKATLDAIYHAVENLQVIPRSALIDGRSIPED- 128
               I S A IS S       + ++I H   +D I  A++ L V      +D    P+  
Sbjct: 92  WMIHILSPAYISTSMLGRSKYNLNSISHDTAIDLIRSALK-LGVEVTEVYVDTVGPPQTY 150

Query: 129 -------LPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMR-IAHKKYPDYGFDSHVGY 179
                   P   F V  K DS    ++AASI AKV RD+ ++    ++ PD       GY
Sbjct: 151 AEKLKKIFPSIKFTVEKKADSKYPVVSAASICAKVCRDKAVKEWRFRENPDTDTKYGSGY 210

Query: 180 P 180
           P
Sbjct: 211 P 211


>gi|300702211|ref|XP_002995135.1| hypothetical protein NCER_102091 [Nosema ceranae BRL01]
 gi|239603960|gb|EEQ81464.1| hypothetical protein NCER_102091 [Nosema ceranae BRL01]
          Length = 235

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 19/153 (12%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           + G+DE GRG + G +V   ++ + +N+P  + DSK ++ K R +++  +T        +
Sbjct: 19  IVGVDEAGRGPVIGYMVYCVMVFEVDNVPKNLKDSKMLTEKMRNDIF--VTLKDYNYAYT 76

Query: 86  ASH-QYIDKHNIHKATLDAI-YHAVENLQVIPRSAL--IDGRSIPEDLPCQAFAVI---- 137
           A H  YI    +    L+ I ++ V NL  +  +A   I+G  I     C          
Sbjct: 77  ALHPSYITTKMLSNVNLNDISWNTVLNLLKLVCNAYTNIEGIFIDAIGTCDKLKEFLELN 136

Query: 138 ---------KGDSISLSIAAASIIAKVTRDRLM 161
                    K DS    ++ ASI+AKVTRD L+
Sbjct: 137 IKHKCTVESKADSKYPVVSGASIVAKVTRDDLL 169


>gi|281202692|gb|EFA76894.1| hypothetical protein PPL_09646 [Polysphondylium pallidum PN500]
          Length = 1257

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 33/165 (20%)

Query: 28   GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS------ 77
            GIDE GRG + GP+V AA  +   N+        +DSKK++  +RE L++ I        
Sbjct: 996  GIDEAGRGPVLGPLVYAACYVPDCNLERMRKLRFDDSKKLTEAQRETLFKTILGNYELLG 1055

Query: 78   --SAIISISSASHQYIDKHNIHKATLDAIYH-AVENL--QVIPR-----SALIDGRSIPE 127
              S +   S  S + + K  +   +LD+I H +  NL  QV+ +     S  +D    P 
Sbjct: 1056 FVSDVNEPSMLSEKMLSKQQV---SLDSISHGSAFNLIQQVLDKGYNIESLYVDTVGPPA 1112

Query: 128  DLPCQ---AFAVI-------KGDSISLSIAAASIIAKVTRDRLMR 162
                +   AF  I       K DS+   ++AASI AKV RDR+++
Sbjct: 1113 KYEAKIRVAFPSIKNVVVSKKADSLYPIVSAASICAKVIRDRIIK 1157


>gi|81428005|ref|YP_395004.1| ribonuclease HIII [Lactobacillus sakei subsp. sakei 23K]
 gi|78609646|emb|CAI54692.1| Ribonuclease HIII (RNase HIII) [Lactobacillus sakei subsp. sakei
           23K]
          Length = 305

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 28/157 (17%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA 79
           W V G DEVG G+  GP+ +AA+ +   N+ F    G+ DSK ++  + +++  K+ +  
Sbjct: 90  WSVIGSDEVGNGSYFGPLTIAAVYVSQENLSFVRNLGVADSKTLTDAQIDQMAIKMMTKL 149

Query: 80  ---IISISSASHQYI-DKHNIHKATLDAIYHAVENLQVI-------PRSALIDG------ 122
              I++I    +  + ++ NI K  + A+ H    L+V+       P+  LID       
Sbjct: 150 PYHIVNIMPQKYNQVHEQMNIEK--MKAVSHNFALLKVLKKIQPDQPQGILIDQFEPRAT 207

Query: 123 -----RSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                +  P  L    +   K +   L++AAASIIA+
Sbjct: 208 YYRYLKDEPVVLRDNVYFTTKAEQFHLAVAAASIIAR 244


>gi|329947878|ref|ZP_08294810.1| ribonuclease HII [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328523502|gb|EGF50600.1| ribonuclease HII [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 240

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 105/226 (46%), Gaps = 36/226 (15%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISH 65
           RP   LE  + E + + V G+DEVGRGALAGPV V   I+     +  P  + DSK+++ 
Sbjct: 8   RPDRSLENELLEAHEY-VGGLDEVGRGALAGPVSVGLAIVGRCTDDAFPVDLADSKQLTA 66

Query: 66  KKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQ-------VIPRS 117
           + R +L E +    +  +++ AS   ID+  I  A   A   A+  +        +I   
Sbjct: 67  RMRTDLVEPVRGWLLDHAVAHASPAEIDERGIVGALRLAGRRALRQVADRGHAPGIIILD 126

Query: 118 ALIDGRSIPE-DL--------PCQAF-------------AVIKGDSISLSIAAASIIAKV 155
            + D  + P+ DL        P QA+               +K D+    +AAAS++AKV
Sbjct: 127 GVADWLTAPQPDLLTTWGDGQPSQAWHEATAEPPTPPVRMEVKADARCAVVAAASVLAKV 186

Query: 156 TRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            RD LM       P YG+ S+ GY +  H   + + G S  HR ++
Sbjct: 187 ERDSLM--TDLTDPGYGWASNKGYASPAHVAGLADLGASDQHRRSW 230


>gi|73670221|ref|YP_306236.1| ribonuclease HII [Methanosarcina barkeri str. Fusaro]
 gi|97182902|sp|Q468N6|RNH2_METBF RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|72397383|gb|AAZ71656.1| RNase HII [Methanosarcina barkeri str. Fusaro]
          Length = 224

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 86/181 (47%), Gaps = 28/181 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-- 79
           +AGIDE G+G + GP+ +  + ++ +        G+ DSKK++ KKRE+L  +I   A  
Sbjct: 3   IAGIDEAGKGPVIGPMCIGGVKIEESRAHILKVLGVADSKKLTPKKREQLAAQIKKHADG 62

Query: 80  --IISISSASHQYIDK-HNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLPCQ- 132
             ++ +S +    + K   +++  +      +E L+   +   +A ++      ++  Q 
Sbjct: 63  FFVLEVSPSQIDELRKIMTMNEIMVVCFSKVLEQLKPDLLYADAADVNAERFATNIRKQY 122

Query: 133 ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
                         ++ + D+    ++AASIIAKV RD L+    K   ++G D   GYP
Sbjct: 123 SKTNPDHAKEIEIISMHQADATYPVVSAASIIAKVRRDELIEELKK---EWGLDFGSGYP 179

Query: 181 T 181
           +
Sbjct: 180 S 180


>gi|21593541|gb|AAM65508.1| putative ribonuclease large subunit [Arabidopsis thaliana]
          Length = 280

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 27/180 (15%)

Query: 28  GIDEVGRGALAGPVVVAA----IILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
           GIDE GRG + GP+V       I    +       DSK +  +KRE+LYE +     +  
Sbjct: 2   GIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEEKREDLYESLKLDKSLGW 61

Query: 84  S---------SASHQYIDKHNIHKATLDA---IYHAVENLQVIPRSALIDGRSIP----- 126
           +         SA     +K N+++ + ++   +   V ++ V+   A +D    P     
Sbjct: 62  AVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPDKYKI 121

Query: 127 ---EDLPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMR--IAHKKYPDYGFDSHVGYP 180
              E  P   F V K  DS+   ++ ASI+AKVTRDR ++  +  +   D   +   GYP
Sbjct: 122 KLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALKEWLVEETGEDINRNFGSGYP 181


>gi|150401039|ref|YP_001324805.1| ribonuclease HII [Methanococcus aeolicus Nankai-3]
 gi|189043622|sp|A6UUM1|RNH2_META3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|150013742|gb|ABR56193.1| ribonuclease HII [Methanococcus aeolicus Nankai-3]
          Length = 277

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 91/204 (44%), Gaps = 51/204 (25%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           + G+DE GRG + GP+V+A + +   ++       I DSKK S  +REEL+E I ++  +
Sbjct: 22  IIGLDEAGRGPVLGPMVIALVKIKGQDLKNFEKLDIKDSKKHSKNRREELFEMIINNYDV 81

Query: 82  SISSASHQYIDKH----NIHKATLDAIYHAV------------ENLQV---IPRSAL-ID 121
                  + IDK     N++K  L A    +            EN ++    P+  + ID
Sbjct: 82  RYEILEAKTIDKLMNTINLNKIELMAFTKLINSVLKEEYPNYKENSKIQTATPQIEIYID 141

Query: 122 GRSIPEDLPCQAFA------VIKGDSISLSI-------------AAASIIAKVTRDRLMR 162
             S  E    +AFA      +I  D  ++ I             +AASIIAKV RDR + 
Sbjct: 142 ACSSNE----KAFANQIKSKLIVNDENNIKIIAEHKADENYKIVSAASIIAKVIRDRKIE 197

Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQ 186
              K Y + G     GYP+ K  Q
Sbjct: 198 EYKKIYGEIG----SGYPSDKITQ 217


>gi|56754417|gb|AAW25396.1| SJCHGC03278 protein [Schistosoma japonicum]
          Length = 289

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 31/183 (16%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-----S 78
           GIDE GRG + GP+V A  +   N +      G+ DSK +S  +RE+L + + +     S
Sbjct: 3   GIDEAGRGPVLGPMVYACALSPINRLNELTTIGLADSKTLSEIQREKLLQDMLNKCDWMS 62

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVENLQVIPRSAL------IDGRSIPEDLP 130
           A++ + S  +      +  K +L+ I H  A++ +Q +  S +      +D     E   
Sbjct: 63  AVVHVISPVYITEKMLDRSKTSLNVISHDSAIQLIQTVLDSGINLVEVYVDTVGKAEHYE 122

Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKK----YPDYGFDSHV 177
            +   +          K D     ++AASI AKVTRDR++++  K+     PD G     
Sbjct: 123 AKLQNLFPQLKIRVESKADDTYPIVSAASIFAKVTRDRILQMWPKEERGNVPD-GTGLGS 181

Query: 178 GYP 180
           GYP
Sbjct: 182 GYP 184


>gi|325960150|ref|YP_004291616.1| ribonuclease Hii [Methanobacterium sp. AL-21]
 gi|325331582|gb|ADZ10644.1| ribonuclease HII [Methanobacterium sp. AL-21]
          Length = 204

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 25/175 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI- 80
           + GIDE GRG++ GP+VV  + ++   + +     + DSKK++ K+R  LY KI   A  
Sbjct: 3   IVGIDEAGRGSVLGPLVVCGVSIEEERLKYLERLKLKDSKKVTPKRRIVLYRKIKKIADC 62

Query: 81  --ISISSASHQYIDKHNIHKATLD--AIYHAVEN----------LQVIPRSALIDGRSIP 126
             + IS+A    +   +++   ++  AI   + N          + V P     +  +  
Sbjct: 63  HPVHISAADIDLLRSKDVNLNEIEKIAIKQIIGNCDPDISYIDCIDVKPERFTNEIENFQ 122

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           E+L  +  A    D     ++AASI+AKV RD+ +    K++ + G     GYP+
Sbjct: 123 ENL--KVVAEHGADDTYPIVSAASIVAKVERDQEISRLKKEFGEIGS----GYPS 171


>gi|154686997|ref|YP_001422158.1| ribonuclease HIII [Bacillus amyloliquefaciens FZB42]
 gi|166226670|sp|A7Z7F1|RNH3_BACA2 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|154352848|gb|ABS74927.1| RnhC [Bacillus amyloliquefaciens FZB42]
          Length = 313

 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 90/206 (43%), Gaps = 38/206 (18%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS--- 78
           V G DEVG G   GP+ VA    D   +      G+ DSK +   +  E+ + +  +   
Sbjct: 96  VIGSDEVGTGDYFGPITVACAYADKTKLSLMKELGVKDSKDLKDPQIIEIAKLLIKTIPY 155

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALID---------- 121
           +++ + +  +  + +  + +  + A+ H  A+ NL      V P + LID          
Sbjct: 156 SLLVLKNEKYNQMQEKGMSQGKMKALLHNQAISNLLRKMNGVKPEAILIDQFAEPGIYFK 215

Query: 122 ---GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK----VTRDRLMRIAHKKYPDYGFD 174
              GR I ++   + F   K +SI LS+AAASIIA+    +  D+L R A    P  G  
Sbjct: 216 HLSGRDIVKE---KTFFSTKAESIHLSVAAASIIARYSFLIEMDKLSREAGMTIPK-GAG 271

Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLT 200
            HV    AK   +I  KG   +   T
Sbjct: 272 PHVDEAAAK---LIINKGEGALRTFT 294


>gi|169806222|ref|XP_001827856.1| ribonuclease HII [Enterocytozoon bieneusi H348]
 gi|161779304|gb|EDQ31327.1| ribonuclease HII [Enterocytozoon bieneusi H348]
          Length = 252

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 105/231 (45%), Gaps = 36/231 (15%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREEL 71
           +L + ++E     + GIDE GRG + GP+V AA ++  N        DSK+++   R+  
Sbjct: 2   KLFSNIKETTEEVIVGIDEAGRGPVIGPMVYAAYVMHTNERRIRQFIDSKQLTPNTRKNY 61

Query: 72  YEKITSSAIISISSAS-HQYIDKH--NIHK-------ATLDAIYHAVENLQVIPRSALID 121
           Y  + + A I I       Y++ H  N+++         L+ I +  +N++++   AL +
Sbjct: 62  YATMMNFAYIVIEPIYITTYMNNHIKNLNQIAEEAVVQLLNEINNKCKNVKMVYIDALGN 121

Query: 122 GRSIPEDLPCQ---AFAV-IKGDSISLSIAAASIIAKVTRDRLM-----RIAHKKYPDYG 172
             +  ++L       F +  K D+    ++AASI+AK+ RD         I    Y   G
Sbjct: 122 VSNYKKNLQAHFKFNFTIEAKADATYEVVSAASIVAKINRDAFFSSKTNNIHENYYTKLG 181

Query: 173 FDSHV----------GYPTAKH-QQVIKEK-----GPSCIHRLTFRPLRNL 207
           ++             GYP+  H QQ +K+      G + I R ++  +++L
Sbjct: 182 YEELTSIKDFNHCGSGYPSDPHTQQWLKDNFHPISGFNSIVRHSWSTIQSL 232


>gi|330508333|ref|YP_004384761.1| ribonuclease HII [Methanosaeta concilii GP-6]
 gi|328929141|gb|AEB68943.1| ribonuclease HII [Methanosaeta concilii GP-6]
          Length = 210

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 70/155 (45%), Gaps = 22/155 (14%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS- 82
           G DE G+G + G + VA +++D          G+ DSK +S  KRE L  KIT+ A    
Sbjct: 5   GADEAGKGPVIGSMFVAGLVIDEERFFDLAVLGVKDSKMLSPAKREALARKITTIATDQY 64

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR----SALIDGRSIPEDLPCQA----- 133
           I     + ID+  +     D +  +    QV+ R     A++D   +  +   QA     
Sbjct: 65  ILEVRAEVIDELRLVMTMNDIMVRSFS--QVVGRLHADRAILDAADVNAERFAQAVRNHS 122

Query: 134 ------FAVIKGDSISLSIAAASIIAKVTRDRLMR 162
                  A  K D     ++AASI+AKV RDR MR
Sbjct: 123 KTSMDLIAEHKADQRHHVVSAASILAKVRRDRSMR 157


>gi|89268632|emb|CAJ82403.1| ribonuclease H2, large subunit [Xenopus (Silurana) tropicalis]
          Length = 301

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 33/183 (18%)

Query: 28  GIDEVGRGALAGPVVVA----AIILDPNNIPFGINDSKKISHKKREELYEKITSSA---- 79
           GIDE GRG + GP+V       +    +     + DSK +S  +RE L+EK+ S++    
Sbjct: 32  GIDEAGRGPVLGPMVYGICYCPVARKKDLQDLKVADSKTLSEAERERLFEKLNSTSDYIG 91

Query: 80  ----IIS--ISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPEDLP 130
               I+S  I S S Q   K+N++  + D     ++   +  V  +   +D     E   
Sbjct: 92  WALHILSPNIISTSMQQRAKYNLNALSHDTAIGLIQFALDAGVQLKEVFLDTVGPAEKYQ 151

Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
            +   +          K DS+   ++AASI AKV RDR+++       D+ F   +G P 
Sbjct: 152 DKLKKIFPELDVTVRPKADSLFPVVSAASICAKVARDRVVK-------DWKFVEDLGDPD 204

Query: 182 AKH 184
           A++
Sbjct: 205 AEY 207


>gi|328872786|gb|EGG21153.1| ribonuclease H2 subunit A [Dictyostelium fasciculatum]
          Length = 303

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 87/190 (45%), Gaps = 38/190 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-I 80
           + GIDE GRG + GP+V  A       I        NDSKK++ ++RE+L+ KI  S  +
Sbjct: 44  IMGIDEAGRGPVLGPLVYGACFAPLKEIETIKKMKFNDSKKLTEQQREQLFIKIIKSPDV 103

Query: 81  ISISS--ASHQYIDKHNIHK--ATLDAIYHAVENLQVIPRSALIDGRSIPE--------D 128
           I   S   + +Y+ +    K   +LD I H     ++I R+ L  G ++ E         
Sbjct: 104 IGFVSDINTPEYLSEKMCAKMPTSLDVISHG-SAFKMI-RTVLDRGYNVQELYLDTVGPA 161

Query: 129 LPCQ-----AFAVI-------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY----- 171
           L  Q     AF  I       K DSI   ++A SI+AKV RD L  IA+  +  Y     
Sbjct: 162 LKYQTKLQIAFPSIGKIVVSSKADSIYPIVSAGSIVAKVLRDVL--IANTSFAAYQGVEI 219

Query: 172 GFDSHVGYPT 181
             D   GYP+
Sbjct: 220 SRDFGSGYPS 229


>gi|159042290|ref|YP_001541542.1| ribonuclease HII [Caldivirga maquilingensis IC-167]
 gi|189043570|sp|A8MAH5|RNH2_CALMQ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157921125|gb|ABW02552.1| ribonuclease HII [Caldivirga maquilingensis IC-167]
          Length = 209

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 25/172 (14%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSSA-----I 80
           AGIDE GRG + GP+V+A +    +     G+ DSK+++   R  LY+ I S A     +
Sbjct: 9   AGIDEAGRGPVIGPMVIAIVGWSNSEAEGIGVKDSKQLTPSGRSRLYKLIVSKAPCVRHV 68

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
           I   S    Y+++  +++     +   ++    + R   +D    P+  P +    I   
Sbjct: 69  IVEPSEIDYYVNRGLLNELEAIKMSELIKACSGVTR-VYVDS---PDPNPSRFRGFINVK 124

Query: 141 SISL-----------SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
            + L            ++AASI+AKV RD ++    + Y D+G     GYP+
Sbjct: 125 DVELIVLNHADESIPLVSAASIVAKVIRDTIISRLKETYGDFGS----GYPS 172


>gi|282165631|ref|YP_003358016.1| ribonuclease HII [Methanocella paludicola SANAE]
 gi|282157945|dbj|BAI63033.1| ribonuclease HII [Methanocella paludicola SANAE]
          Length = 217

 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 22/157 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           +AGIDE GRG + GP+VV  + +    +      G+ DSK ++ KKREE   KI      
Sbjct: 2   IAGIDEAGRGPVIGPMVVCGVSVSEKKLRKIKSMGLKDSKLLTPKKREEFAVKIKDVCEY 61

Query: 82  SISSASHQYIDKH-----NIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--------- 127
            +     + ID       N+++  ++   + ++ L+  P +A +D   +           
Sbjct: 62  ELVVVGPERIDSRANDELNLNELEVECFSNILKALR--PATAYVDACDVNAERFGINVKK 119

Query: 128 --DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162
             D   +  +    D     ++AASI+AKV RD L++
Sbjct: 120 GLDFEVEVISRHNADRDYPVVSAASILAKVHRDALIK 156


>gi|61557385|ref|NP_001013252.1| ribonuclease H2 subunit A [Rattus norvegicus]
 gi|81889649|sp|Q5U209|RNH2A_RAT RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
           AltName: Full=Ribonuclease HI large subunit; Short=RNase
           HI large subunit; AltName: Full=Ribonuclease HI subunit
           A
 gi|55562777|gb|AAH86345.1| Rnaseh2a protein [Rattus norvegicus]
 gi|55824706|gb|AAH86539.1| Ribonuclease H2, subunit A [Rattus norvegicus]
 gi|149037817|gb|EDL92177.1| ribonuclease H2, large subunit, isoform CRA_a [Rattus norvegicus]
 gi|149037820|gb|EDL92180.1| ribonuclease H2, large subunit, isoform CRA_a [Rattus norvegicus]
          Length = 301

 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 32/185 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA-- 79
           V G+DE GRG + GP+V A      + +       + DSK ++  +RE L+ K+      
Sbjct: 30  VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDF 89

Query: 80  ------IISISSASHQYID--KHNIHKATLDA----IYHAV-ENLQVIPRSALIDGRSIP 126
                 I+S +  S   +   K+N++  + D     I HA+ +N++V      +D   +P
Sbjct: 90  VGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVT--QVFVDTVGMP 147

Query: 127 EDLPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
           E       Q F  I      K DS+   ++AASIIAKV RD+ ++         G DS  
Sbjct: 148 ETYQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQFVESLQGLDSDY 207

Query: 178 --GYP 180
             GYP
Sbjct: 208 GSGYP 212


>gi|55648379|ref|XP_512415.1| PREDICTED: ribonuclease H2 subunit A isoform 2 [Pan troglodytes]
          Length = 299

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 85/198 (42%), Gaps = 38/198 (19%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           V G+DE GRG + GP+V A      + +       + DSK +   +RE L+ K+  +  +
Sbjct: 30  VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLLESERERLFAKMEDTDFV 89

Query: 82  SIS---------SASHQYIDKHNIHKATLD--------AIYHAVENLQVIPRSALIDGRS 124
             +         S S     K+N++  + D        A+Y  V   QV      +D   
Sbjct: 90  GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALYQGVNVTQV-----FVDTVG 144

Query: 125 IPEDLPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGF 173
           +PE       Q+F  I      K D++   ++AASI AKV RD+ ++     +K  D   
Sbjct: 145 MPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDSDT 204

Query: 174 DSHVGYPT-AKHQQVIKE 190
           D   GYP   K +  +KE
Sbjct: 205 DYGSGYPNDPKTKAWLKE 222


>gi|125533439|gb|EAY79987.1| hypothetical protein OsI_35154 [Oryza sativa Indica Group]
          Length = 298

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 29/183 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG + GP+V   +                DSK +  ++REEL+E +  ++ I
Sbjct: 16  LMGIDEAGRGPVLGPMVYGCMYCARSYQDTLATLKFADSKTLKEEQREELFESLKDNSSI 75

Query: 82  SIS---------SASHQYIDKHNI----HKATLDAIYHAVENLQVIPRSALIDGRS---- 124
                       SA      K N+    H + +  +  A+ ++ V+     ID       
Sbjct: 76  GWEVDVICPKELSAKMLKRSKVNLNEISHNSAMGLVKRAL-DMGVLLAEVYIDTVGDAEK 134

Query: 125 ----IPEDLPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMR--IAHKKYPDYGFDSHV 177
               + E  P   F V K  DS+   ++ ASI++KVTRDR +R  +  +   +   ++  
Sbjct: 135 YRIKLTEKFPGIKFVVAKKADSLFPVVSGASIVSKVTRDRALRNWVFDETAQNMHMNTGS 194

Query: 178 GYP 180
           GYP
Sbjct: 195 GYP 197


>gi|115484243|ref|NP_001065783.1| Os11g0153900 [Oryza sativa Japonica Group]
 gi|62701661|gb|AAX92734.1| ribonuclease HII, putative [Oryza sativa Japonica Group]
 gi|77548724|gb|ABA91521.1| ribonuclease HI large subunit, putative, expressed [Oryza sativa
           Japonica Group]
 gi|113644487|dbj|BAF27628.1| Os11g0153900 [Oryza sativa Japonica Group]
 gi|125576251|gb|EAZ17473.1| hypothetical protein OsJ_33004 [Oryza sativa Japonica Group]
          Length = 298

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 29/183 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG + GP+V   +                DSK +  ++REEL+E +  ++ I
Sbjct: 16  LMGIDEAGRGPVLGPMVYGCMYCARSYQDTLATLKFADSKTLKEEQREELFESLKDNSSI 75

Query: 82  SIS---------SASHQYIDKHNI----HKATLDAIYHAVENLQVIPRSALIDGRS---- 124
                       SA      K N+    H + +  +  A+ ++ V+     ID       
Sbjct: 76  GWEVDVICPKELSAKMLKRSKVNLNEISHNSAMGLVKRAL-DMGVLLAEVYIDTVGDAEK 134

Query: 125 ----IPEDLPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMR--IAHKKYPDYGFDSHV 177
               + E  P   F V K  DS+   ++ ASI++KVTRDR +R  +  +   +   ++  
Sbjct: 135 YRIKLTEKFPGIKFVVAKKADSLFPVVSGASIVSKVTRDRALRNWVFDETAQNMHMNTGS 194

Query: 178 GYP 180
           GYP
Sbjct: 195 GYP 197


>gi|328865315|gb|EGG13701.1| hypothetical protein DFA_11462 [Dictyostelium fasciculatum]
          Length = 665

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKIS 64
           RP           N+   AGIDE G+G++ GP+VVA +++D          G+ DSK ++
Sbjct: 237 RPRLTPANKFNNYNINIYAGIDESGKGSVLGPLVVAIVVIDQPTSQLLRATGVKDSKALT 296

Query: 65  HKKREELYEKITSSAI 80
             +RE LY  IT  AI
Sbjct: 297 SAQRENLYSIITEKAI 312


>gi|116754092|ref|YP_843210.1| ribonuclease HII [Methanosaeta thermophila PT]
 gi|121694604|sp|A0B796|RNH2_METTP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|116665543|gb|ABK14570.1| RNase HII [Methanosaeta thermophila PT]
          Length = 211

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 22/160 (13%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS 78
           M  + G+DE G+G + G + VA ++    +I      G+ DSK +S  +RE +  KI S 
Sbjct: 1   MMLILGVDEAGKGPVIGSMFVAGVVFSEEDIFDLAACGVKDSKLLSPTRRESMERKILSI 60

Query: 79  AIIS-ISSASHQYIDK----HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           A  S +   + Q ID      ++++  + A    V  LQ     A++D   +  +   Q 
Sbjct: 61  ARESFVLEVTAQQIDDLRMVMSMNEIMVRAHSRVVSRLQ--ADRAILDAADVNAERFAQR 118

Query: 134 FAVIKGDSISL-----------SIAAASIIAKVTRDRLMR 162
              + G  I +            +AAASIIAKV RDR +R
Sbjct: 119 VREVSGKPIDILAEHNADRKHIVVAAASIIAKVARDRSIR 158


>gi|149037818|gb|EDL92178.1| ribonuclease H2, large subunit, isoform CRA_b [Rattus norvegicus]
 gi|149037821|gb|EDL92181.1| ribonuclease H2, large subunit, isoform CRA_b [Rattus norvegicus]
          Length = 282

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 32/185 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA-- 79
           V G+DE GRG + GP+V A      + +       + DSK ++  +RE L+ K+      
Sbjct: 30  VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDF 89

Query: 80  ------IISISSASHQYID--KHNIHKATLDA----IYHAV-ENLQVIPRSALIDGRSIP 126
                 I+S +  S   +   K+N++  + D     I HA+ +N++V      +D   +P
Sbjct: 90  VGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVT--QVFVDTVGMP 147

Query: 127 EDLPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
           E       Q F  I      K DS+   ++AASIIAKV RD+ ++         G DS  
Sbjct: 148 ETYQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQFVESLQGLDSDY 207

Query: 178 --GYP 180
             GYP
Sbjct: 208 GSGYP 212


>gi|294464821|gb|ADE77916.1| unknown [Picea sitchensis]
          Length = 293

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 31/165 (18%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELYEKITSSA 79
           + GIDE GRG + GP+V   +    +       + F   DSK +  +KREEL+E + + A
Sbjct: 15  IMGIDEAGRGPVLGPMVYGCLYCSASYQETLATLKFA--DSKTLKEEKREELFESLKADA 72

Query: 80  IIS----------ISSASHQYIDKHNIHKATLDA---IYHAVENLQVIPRSALIDGRS-- 124
            +           +S+   Q I K N++  + DA   + + V +  ++     +D     
Sbjct: 73  SLGWAVDIIDPRELSAKMLQRI-KVNLNTISHDAAMGLVNTVLSKGILLSEVYVDTVGDA 131

Query: 125 ------IPEDLPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMR 162
                 + E  P   F V K  DS+   ++ ASI+AKVTRD  +R
Sbjct: 132 DKYRIKLEEKFPGIKFVVSKKADSLYPIVSGASIVAKVTRDNALR 176


>gi|329766419|ref|ZP_08257963.1| Ribonuclease HII [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137018|gb|EGG41310.1| Ribonuclease HII [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 62

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 37/53 (69%), Gaps = 4/53 (7%)

Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK 74
          + G+D+ GRG++ GP+V+A I L  +++      G+ DSK+++ K REELY+K
Sbjct: 10 ICGVDDAGRGSMLGPLVIAGISLKKSDVSKLKLLGVKDSKQLTPKLREELYKK 62


>gi|19173027|ref|NP_597578.1| BELONGS TO THE RIBONUCLEASE HII FAMILY [Encephalitozoon cuniculi
           GB-M1]
 gi|19168694|emb|CAD26213.1| BELONGS TO THE RIBONUCLEASE HII FAMILY [Encephalitozoon cuniculi
           GB-M1]
          Length = 239

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 28/176 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITSSAIISI 83
           V GIDE GRG + G +V  A+++ P  +    G  DSK ++  +R   ++ I        
Sbjct: 19  VVGIDEAGRGPVVGYMVYGALVV-PRGVLEDVGFKDSKVLTPAQRYNFFQMIKKKGFGYA 77

Query: 84  SSASH-QYIDKH------NIHKATLDAIYHAVENLQ-------VIPRSALIDGRSIPE-- 127
              SH  YI +       ++++ ++ ++   ++ +Q        I   AL D R   E  
Sbjct: 78  YHCSHPDYITEMMQVRSVSLNEVSIGSVLRILDEVQSKCRRVDTIYVDALGDCRKYKERL 137

Query: 128 --DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
             D P +     + DS    ++ ASI+AKV RD L+        ++G D   GYP+
Sbjct: 138 EKDYPYRFVVEERADSKFQVVSGASIVAKVQRDMLI-------SEFGEDLGSGYPS 186


>gi|325189407|emb|CCA23898.1| ribonuclease H2 subunit A putative [Albugo laibachii Nc14]
          Length = 303

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 78/194 (40%), Gaps = 46/194 (23%)

Query: 26  VAGIDEVGRGALAGPVVVAA--IILDPNNI--PFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG + GP+V +A    +D N      G +DSK +S   R+ LY+ IT S  I
Sbjct: 24  IMGIDEAGRGPVLGPMVYSAAYWAIDSNEACEAMGFDDSKVLSAASRKSLYKTITESTEI 83

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED----LPCQAFAVI 137
                S  +I +        D +   V NL  I R A I    I +     L C     I
Sbjct: 84  ----GSISWIARSVSACEISDKMQRKVRNLNEIARDATIQIIEIVQAKRVCLQCVYVDTI 139

Query: 138 ------------------------KGDSISLSIAAASIIAKVTRDRLMR------IAHKK 167
                                   K D +   ++AASI+AKV RD ++       + H  
Sbjct: 140 GDPSWYQNFLTKHFREKITFVVRKKADQLFKIVSAASIVAKVIRDTILEEWKWETLTHTL 199

Query: 168 YPDYGFDSHVGYPT 181
             ++G     GYP+
Sbjct: 200 PTEFG----SGYPS 209


>gi|295099552|emb|CBK88641.1| Ribonuclease HIII [Eubacterium cylindroides T2-87]
          Length = 170

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 8/90 (8%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREE 70
           E+    KNM+P AG DEVG G   GPVVV+A+I+   N        I DSK+I+ +K   
Sbjct: 58  ESSSESKNMFPQAGSDEVGTGDYFGPVVVSAVIVSKENEDVLRNLKIQDSKQINDEKIRV 117

Query: 71  LYEKITS---SAIISISSASHQYIDK-HNI 96
           L ++I S     I+ +SS+ +  + K HN+
Sbjct: 118 LAKEIKSLCPHTILIVSSSKYNSVHKQHNM 147


>gi|152976941|ref|YP_001376458.1| ribonuclease HIII [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025693|gb|ABS23463.1| ribonuclease HIII [Bacillus cytotoxicus NVH 391-98]
          Length = 338

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 33/202 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           + G DEVG G   GP+ V A  +D   IP     G+ DSK ++  +     ++L   I  
Sbjct: 123 IIGSDEVGTGDYFGPMTVVAAYVDAKQIPLLKELGVKDSKNLNDAQITAIAKQLLTVIPY 182

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128
           S+++  +   ++  DK N ++  L A+ H  A+ NL        P   LID  + P+   
Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAIINLLAKIAPTKPDGILIDQFTQPDTYY 241

Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
             L  Q        +   KG+SI L++AAASI+A+ +     D L + A  + P  G   
Sbjct: 242 KYLANQKQVQRDNVYFATKGESIHLAVAAASILARYSFVKQFDELSKKAGMQLPK-GAGK 300

Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196
            V    AK  Q++ KE+ P  +
Sbjct: 301 QVDIAAAKLIQKLGKERLPEFV 322


>gi|308174559|ref|YP_003921264.1| ribonuclease HIII [Bacillus amyloliquefaciens DSM 7]
 gi|307607423|emb|CBI43794.1| ribonuclease HIII [Bacillus amyloliquefaciens DSM 7]
 gi|328554482|gb|AEB24974.1| ribonuclease HIII [Bacillus amyloliquefaciens TA208]
 gi|328912886|gb|AEB64482.1| ribonuclease HIII [Bacillus amyloliquefaciens LL3]
          Length = 313

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 90/206 (43%), Gaps = 38/206 (18%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS--- 78
           V G DEVG G   GP+ VA    D   +      G+ DSK +   +  E+ + +  +   
Sbjct: 96  VIGSDEVGTGDYFGPITVACAYADKTKLSLMKELGVKDSKDLKDPQIIEIAKLLIKTIPY 155

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALID---------- 121
           +++ + +  +  + +  + +  + A+ H  A+ NL      V P + LID          
Sbjct: 156 SLLVLKNEKYNQMQEKGMSQGKMKALLHNQAISNLLKKMNGVKPEAILIDQFAEPGIYFK 215

Query: 122 ---GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK----VTRDRLMRIAHKKYPDYGFD 174
              GR I ++   + F   K +SI LS+AAASIIA+    +  D+L R A    P  G  
Sbjct: 216 HLSGRDIVKE---KTFFSTKAESIHLSVAAASIIARYSFLLEMDKLSREAGMTIPK-GAG 271

Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLT 200
            HV    AK   +I  KG   +   T
Sbjct: 272 PHVDEAAAK---LIINKGEDALRTFT 294


>gi|297527144|ref|YP_003669168.1| ribonuclease HII [Staphylothermus hellenicus DSM 12710]
 gi|297256060|gb|ADI32269.1| ribonuclease HII [Staphylothermus hellenicus DSM 12710]
          Length = 244

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 91/208 (43%), Gaps = 37/208 (17%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKIT----SSA 79
           G+DE GRG L G +V+A +I+  N     I  G+ DSK+++   R  L +KI     S+ 
Sbjct: 11  GVDEAGRGPLIGDLVIAILIISRNKIEKLISIGVKDSKQLTRHTRLSLAKKILKLADSAL 70

Query: 80  IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI-- 137
           II IS    + ID +NI++   + I  A++    +          I E    + + +   
Sbjct: 71  IIYISP---EIIDSYNINRIIAEKIILALKLFSPVINHYRTASIYIDEIKGYKNYILANL 127

Query: 138 --------------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
                           D     ++AASI+AK  RD+ +    K Y + G     GYP+ +
Sbjct: 128 SKYINNIEEYVMEPNADQKYPVVSAASILAKTIRDKNIDFLKKIYGNLG----SGYPSDR 183

Query: 184 H--QQVIK----EKGPSCIHRLTFRPLR 205
                +IK    EK P  I R T+  LR
Sbjct: 184 VTINWLIKTYNGEKEPPLIIRRTWSTLR 211


>gi|324509653|gb|ADY44053.1| Ribonuclease H2 subunit A [Ascaris suum]
          Length = 298

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 84/191 (43%), Gaps = 40/191 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAII--LDPNNI--PFGINDSKKISHKKREELYE-------- 73
           V GIDE GRG + GP+V A  I  LD        G++DSK ++ +KR +++E        
Sbjct: 30  VLGIDEAGRGPVLGPMVYACAISPLDAAEQLKELGVDDSKALTEEKRTQIFENMNNEENT 89

Query: 74  --------KITSSAIISISSASH-QYIDKHNIHKATLDAIYHAVENL---------QVIP 115
                   ++ S+ +IS       +Y      H + ++ I  A+EN           V P
Sbjct: 90  TKVVAYAYRVLSARLISAEMLRRCKYSLNELSHTSAINLIKFALENGINVTEIYVDTVGP 149

Query: 116 RSALIDGRSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRI-----AHKKYP 169
           +S       +    P  +  V  K DS+   + AASI AKVTRD ++R           P
Sbjct: 150 KSTY--QAKLQAHFPNISITVTEKADSLFPVVGAASIAAKVTRDGVLRDWVFVEGDVTVP 207

Query: 170 DYGFDSHVGYP 180
           + G+ S  GYP
Sbjct: 208 EGGYGS--GYP 216


>gi|82706071|ref|XP_727229.1| ribonuclease HII [Plasmodium yoelii yoelii str. 17XNL]
 gi|23482972|gb|EAA18794.1| ribonuclease HII, putative [Plasmodium yoelii yoelii]
          Length = 307

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 40/187 (21%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI--- 80
           GIDE GRG + GP+V +       +        I+DSKKI+   RE+++ K+ +S +   
Sbjct: 20  GIDEAGRGPVLGPMVYSGFYCKKEDEKLLKEMKIDDSKKITEHDREKMFYKLNNSKLPFA 79

Query: 81  --ISIS-----SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA--------LIDGRSI 125
             + I      SA     +K+N+++ + D     ++   V+ R           +   S+
Sbjct: 80  WRVHILMPQDISAKMLKKEKYNLNEISHDTAISIIQ--HVLSRGCNLTEVFVDTVGKASV 137

Query: 126 PEDLPCQAFAVIK------GDSISLSIAAASIIAKVTRDRLMRIAHKKYP------DYGF 173
            E+   + F  IK       DS+   ++AASI AKVTRD L  I   KY       D GF
Sbjct: 138 YEEKLQKLFPNIKCVVKEKADSLYPVVSAASICAKVTRDFL--IKKWKYEEQIINIDKGF 195

Query: 174 DSHVGYP 180
            S  GYP
Sbjct: 196 GS--GYP 200


>gi|253748461|gb|EET02569.1| Ribonuclease HI, large sub [Giardia intestinalis ATCC 50581]
          Length = 243

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 98/233 (42%), Gaps = 59/233 (25%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKREELYEKI--- 75
           + GIDE GRG + GP+V   I   P  +         G+NDSK +S   RE +YE++   
Sbjct: 2   IVGIDEAGRGPVCGPLVY-GIAWMPAKVYQTGILEKLGVNDSKALSADTREYIYEQLHAL 60

Query: 76  ------TSSAIISISSASHQYI--DKHNIHKATLDA----IYHAVENLQ--------VIP 115
                  ++A+IS    S   +   K +++  + +A    +Y    + +        V P
Sbjct: 61  PKDDFGCNTAVISADQISRAMLAPRKTSLNLLSFEAARSLLYQVFTSYEIEHVYIDLVSP 120

Query: 116 RSALIDGRSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAH--------- 165
            S       I E +P  A  +  K D       AASI+AKVTRDR ++            
Sbjct: 121 ESQY--AAYIRELMPNLALTICAKADGKYPITGAASIVAKVTRDRHIKAQWGSGYPSDPK 178

Query: 166 -KKYPD------YGFDSHV--GYPTAKHQQVIKEKGPSCIHRLTF---RPLRN 206
            K+Y D      YGF +H+   + T K    I +    CI + TF    PL N
Sbjct: 179 TKEYLDKACHSIYGFPAHIRHSWETVKR---IYDTPSKCI-KCTFIADTPLEN 227


>gi|325294626|ref|YP_004281140.1| ribonuclease HIII [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065074|gb|ADY73081.1| ribonuclease HIII [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 270

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 17/151 (11%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA---- 79
           G DE G+G   GP+VVA +  D N     +  G+ DSK +S +K  ++ E+I        
Sbjct: 76  GCDEAGKGEFVGPLVVACVCADKNCLRKLLDLGVKDSKALSREKILKMAEEIKKYCRGRV 135

Query: 80  -IISISSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRS------IPEDLP 130
            +I     +  Y    N+++   D     + +L  +  P+  ++D  S      + E   
Sbjct: 136 KVIMPFQYNKLYEKYKNLNRLLEDIYVELIGSLLAKYSPQEVIVDKFSSRIEPLLKEKFK 195

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLM 161
             +F V+      L +AAASI+AK  R + M
Sbjct: 196 NTSFKVVPKAEKDLVVAAASIVAKAERLKAM 226


>gi|45361019|ref|NP_989146.1| ribonuclease H2, subunit A [Xenopus (Silurana) tropicalis]
 gi|38494390|gb|AAH61614.1| ribonuclease H2, large subunit [Xenopus (Silurana) tropicalis]
          Length = 301

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 33/183 (18%)

Query: 28  GIDEVGRGALAGPVVVA----AIILDPNNIPFGINDSKKISHKKREELYEKITSSA---- 79
           GIDE GRG + GP+V       +    +     + DSK +S  +RE L+EK+ S++    
Sbjct: 32  GIDEAGRGPVLGPMVYGICYCPVARKKDLQDLKVADSKTLSEAERERLFEKLNSTSDYIG 91

Query: 80  ----IIS--ISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPEDLP 130
               I+S  I S S Q   K+N++  + D     ++   +  V  +   +D     E   
Sbjct: 92  WALHILSPNIISTSMQQRAKYNLNALSHDTAIGLIQFALDAGVQLKEVFLDTVGPAEKYQ 151

Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
            +   +          K DS+   ++AASI AKV RDR+++       ++ F   +G P 
Sbjct: 152 DKLKKIFPELDVTVRPKADSLFPVVSAASICAKVARDRVVK-------EWKFVEDLGDPD 204

Query: 182 AKH 184
           A++
Sbjct: 205 AEY 207


>gi|303243761|ref|ZP_07330102.1| ribonuclease HII [Methanothermococcus okinawensis IH1]
 gi|302486003|gb|EFL48926.1| ribonuclease HII [Methanothermococcus okinawensis IH1]
          Length = 305

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 8/79 (10%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS----A 79
           G+DE GRG + GP+V+A +     ++P     G+ DSKK+S  KREELY+ I ++    +
Sbjct: 42  GLDEAGRGPVLGPMVIALVKATEKDLPKFDELGLKDSKKLSRHKREELYKIIMNNYEVKS 101

Query: 80  IISISSASHQYIDKHNIHK 98
           II  +    + ++K N++K
Sbjct: 102 IILEAKDIDKMMEKTNLNK 120


>gi|307198751|gb|EFN79554.1| Ribonuclease H2 subunit A [Harpegnathos saltator]
          Length = 337

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 74/183 (40%), Gaps = 30/183 (16%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELYEKIT------ 76
           G+DE GRG + GP+V   I   P +     +  G  DSK ++ KKR+E+++ I       
Sbjct: 66  GVDEAGRGPVLGPMVYG-ISYAPLSRKQLLVELGCADSKSLTEKKRDEIFDGICEHKDCI 124

Query: 77  -------SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
                  S  +I+ S      +  +     +   +  A     V      +D    PE  
Sbjct: 125 GWAVEAISPNVIANSMYRRTKVSLNETSMVSATELIKAAIEAGVNVAEVYVDTVGKPETY 184

Query: 130 PCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV--G 178
             +  AV          K DS    ++AASI AKV+RD  +R    +  D  F S    G
Sbjct: 185 QARLKAVFPGVKVVVAKKADSTYPIVSAASICAKVSRDHAIRAWRFREVDVAFPSEYGSG 244

Query: 179 YPT 181
           YPT
Sbjct: 245 YPT 247


>gi|284164032|ref|YP_003402311.1| ribonuclease HII [Haloterrigena turkmenica DSM 5511]
 gi|284013687|gb|ADB59638.1| ribonuclease HII [Haloterrigena turkmenica DSM 5511]
          Length = 228

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 77/184 (41%), Gaps = 35/184 (19%)

Query: 28  GIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86
           G+DE G+G   G +  AA+   DP  +P GI DSK++S ++REEL   I     I +  A
Sbjct: 4   GVDEAGKGPALGSMFAAAVHCEDPTALPDGIADSKRLSPERREELAAAIREDDGIRVGVA 63

Query: 87  --SHQYIDKHNIHKATLDAIYHA--------VENLQVIPRSALIDG---------RSIPE 127
             +   ID       +L    HA         + L+  P + L D          R + +
Sbjct: 64  EITPARIDDPETDMNSLAVAAHAEAIDGALEADALETAPITGLCDACDTDAERFARRVTD 123

Query: 128 ---DLPCQAFAVIK--------GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
              DL   A + ++         D  S  + AAS++AKV RD  +     +Y   G    
Sbjct: 124 ACTDLFADASSALEINIEARHGADDESPIVGAASVVAKVERDAHVAALADEYGPVG---- 179

Query: 177 VGYP 180
            GYP
Sbjct: 180 SGYP 183


>gi|229140480|ref|ZP_04269035.1| Ribonuclease HII [Bacillus cereus BDRD-ST26]
 gi|228643041|gb|EEK99317.1| Ribonuclease HII [Bacillus cereus BDRD-ST26]
          Length = 106

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 31/44 (70%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN 58
           E  +REK +  +AGIDEVGRG LAGPVV AA++L  + +  G+ 
Sbjct: 63  ENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPKDFLYSGVK 106


>gi|221132373|ref|XP_002166509.1| PREDICTED: similar to ribonuclease H2, large subunit [Hydra
           magnipapillata]
          Length = 300

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 88/197 (44%), Gaps = 41/197 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA---- 79
           GIDE GRG + GP+V +      + I      G  DSK ++ +KR+ L   I ++     
Sbjct: 32  GIDEAGRGPVLGPMVYSVCYCPISMIKKLSDLGFADSKTLTEEKRDNLLSVIENNCDFIG 91

Query: 80  ----IISISSASHQYIDKHNIHKATLDAIYH--AVENLQVIPRSALIDGRSIPE---DLP 130
               IIS +  S++ + ++   K TL+ I H  A+E    + R  +  G +I E   D  
Sbjct: 92  WAIKIISPTEISNEMLRRY---KVTLNEISHGAAIE----LTRKTINAGANITEMYVDTV 144

Query: 131 CQAF-------AVIKGDSISLS---------IAAASIIAKVTRDRLMRIAHKKYPDYGFD 174
             A         V  G S+ ++         ++AASI AKV RDR ++       D   D
Sbjct: 145 GDALKYQNKLSEVFDGISVKVTPKADALFPIVSAASICAKVARDRCIQNWQFPEGDIKED 204

Query: 175 SHVGYPT-AKHQQVIKE 190
              GYP   K +Q +K+
Sbjct: 205 YGSGYPADPKTKQWLKD 221


>gi|290991286|ref|XP_002678266.1| predicted protein [Naegleria gruberi]
 gi|284091878|gb|EFC45522.1| predicted protein [Naegleria gruberi]
          Length = 245

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 86/196 (43%), Gaps = 37/196 (18%)

Query: 26  VAGIDEVGRGALAGPVVVAAII----LDPNNI---PFGINDSKKISHKKREELYEKITSS 78
           V GIDE GRG + GP+V A +      + +N     F +NDSKK++ K RE++++ +  +
Sbjct: 14  VMGIDEAGRGPVLGPLVYACMFCKSKYNTDNFLKKTFHVNDSKKLTAKMREKIFKTLKEN 73

Query: 79  A--------IISISSASHQYID--KHNI----HKATLDAIYHAVENLQ---VIPRSALID 121
           +        I+     SH+ +   K+N+    H   +  I  A E L       +   ID
Sbjct: 74  SKIVHYITCIVQSDEISHKMLSRKKYNLNLISHDCAIHLIKTASETLSKKGKYLKEVYID 133

Query: 122 GRSIP--------EDLPCQAFAVI--KGDSISLSIAAASIIAKVTRDRLM-RIAHKKYPD 170
               P        E  P     V+  K DS    +  ASI+AKV RD ++  I   KY  
Sbjct: 134 TVGDPKKYQAKLQEKFPEIESIVVDKKADSKYPVVGGASIVAKVKRDEIVEEIQSLKYSK 193

Query: 171 YGFDSHVGYPTAKHQQ 186
               S  GY + K+ +
Sbjct: 194 LKMGS--GYTSDKYTK 207


>gi|217964706|ref|YP_002350384.1| ribonuclease hiii [Listeria monocytogenes HCC23]
 gi|217333976|gb|ACK39770.1| ribonuclease hiii [Listeria monocytogenes HCC23]
 gi|307570733|emb|CAR83912.1| rnhC [Listeria monocytogenes L99]
          Length = 293

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 33/158 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78
           V G DEVG G   GP+ V A  +D   IP     G+ DSK +   +   + EKI      
Sbjct: 78  VIGSDEVGTGDFFGPITVCAAYVDAEMIPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124
           +++   +  +  + K  +++  + A+ H  A+EN+      + P + LID  +       
Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLTPIKPEAILIDQFAEKNTYYR 197

Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                   I ED+    F   K + + LS+AAASIIA+
Sbjct: 198 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 231


>gi|183232283|ref|XP_655093.2| RNase HI large subunit [Entamoeba histolytica HM-1:IMSS]
 gi|169802113|gb|EAL49706.2| RNase HI large subunit, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 270

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 29/162 (17%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITSSAIISISS 85
           GIDE GRG + GP+V +A       +    G +DSK +S   RE+L+  I  S +   S+
Sbjct: 18  GIDEAGRGPVLGPMVYSAFFTTNTEVISTMGFHDSKILSRTMREKLFTDIKESGVCGFST 77

Query: 86  --ASHQYIDKHNI--HKATLDAI-YHAVENL--QVIPRS-------------------AL 119
              +  YI +      K +L+ I + AV ++  Q+I  S                   A+
Sbjct: 78  RILTPSYISQMMCGPQKVSLNEIAFSAVRDIIHQIIRTSQRKIVHIYCDTVGPSKKYQAM 137

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM 161
           I      E    Q     K D +   ++AASI AKVTRD  +
Sbjct: 138 I-ANEFKEVKLSQITVCPKADGLYPVVSAASICAKVTRDTCL 178


>gi|170049569|ref|XP_001857534.1| ribonuclease H2 subunit A [Culex quinquefasciatus]
 gi|167871354|gb|EDS34737.1| ribonuclease H2 subunit A [Culex quinquefasciatus]
          Length = 334

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 36/188 (19%)

Query: 26  VAGIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSSAII 81
           V G+DE GRG + GP+V  +A   +D  ++    G  DSK+++ +KRE +++++      
Sbjct: 60  VLGVDEAGRGPVLGPMVYGIAFSPIDKKDVLKKLGFADSKQLTEEKREHIFDEMNKQDFA 119

Query: 82  SIS-------------SASHQYIDKHNIHKATLDA----IYHAVENLQVIPRSALIDGRS 124
           + S             S S     K ++++ ++D+    I+ A+E    I     +D   
Sbjct: 120 TESIGWAVEVISPNDISMSMLRRSKRSLNEVSMDSAIGLIHKAIEAGVNIAE-VYVDTVG 178

Query: 125 IPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY---PDYG 172
            PE    +   +          K DS  L ++AASI AKV+RD  +++   +    P+  
Sbjct: 179 PPEKYQAKLKLIFPNFKITVAKKADSTYLIVSAASICAKVSRDHALKVWKFREGTDPEVK 238

Query: 173 FDSHVGYP 180
           F S  GYP
Sbjct: 239 FGS--GYP 244


>gi|313609179|gb|EFR84856.1| ribonuclease hiii [Listeria monocytogenes FSL F2-208]
          Length = 293

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 33/158 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EKI      
Sbjct: 78  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124
           +++   +  +  + K  +++  + A+ H  A+EN+      V P + LID  +       
Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 197

Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                   I ED+    F   K + + LS+AAASIIA+
Sbjct: 198 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 231


>gi|254576869|ref|XP_002494421.1| ZYRO0A01100p [Zygosaccharomyces rouxii]
 gi|238937310|emb|CAR25488.1| ZYRO0A01100p [Zygosaccharomyces rouxii]
          Length = 309

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 82/196 (41%), Gaps = 44/196 (22%)

Query: 26  VAGIDEVGRGALAGPVVVAAI---------ILDPNNIPFGINDSKKISHKKREELYEKI- 75
           + G+DE GRG + GP+V             IL PN   +G +DSKK+S  +R  L+ KI 
Sbjct: 43  ILGVDEAGRGPVLGPMVYGISYCTKQFQDEILKPN---YGFDDSKKLSDLERRRLFSKIY 99

Query: 76  -TSSAIISISSASHQY--IDKHNIHKATLDAIYHAVENLQVIPRS---ALIDG------- 122
             +  +  I++  +    I   +I    L    +A  NL         ALI+G       
Sbjct: 100 GENGEVAEIANVGYAVTAITPADISSGMLRYPANANYNLNEQAHDVTIALIEGVLQRGVK 159

Query: 123 ----------------RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLM-RIA 164
                           + + +  P   F V  K DS+   ++ ASI+AKVTRD L+ + A
Sbjct: 160 LHHVYVDTVGPPASYQKKLEQKFPHIKFTVAKKADSLYCVVSVASIVAKVTRDILLEQWA 219

Query: 165 HKKYPDYGFDSHVGYP 180
            +  P        GYP
Sbjct: 220 QQVSPPEAGPLGSGYP 235


>gi|73917846|sp|Q720K1|RNH3_LISMF RecName: Full=Ribonuclease HIII; Short=RNase HIII
          Length = 308

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 33/158 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EKI      
Sbjct: 93  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 152

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124
           +++   +  +  + K  +++  + A+ H  A+EN+      V P + LID  +       
Sbjct: 153 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 212

Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                   I ED+    F   K + + LS+AAASIIA+
Sbjct: 213 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 246


>gi|16079914|ref|NP_390740.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310803|ref|ZP_03592650.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315128|ref|ZP_03596933.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221320046|ref|ZP_03601340.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221324328|ref|ZP_03605622.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. SMY]
 gi|7227926|sp|P94541|RNH3_BACSU RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|1770032|emb|CAA99565.1| hypothetical protein [Bacillus subtilis]
 gi|2635327|emb|CAB14822.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. 168]
          Length = 313

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 91/206 (44%), Gaps = 38/206 (18%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS--- 78
           V G DEVG G   GP+ V    +D   +P     G+ DSK +   +  E+   +  +   
Sbjct: 96  VIGSDEVGTGDYFGPMTVVCAYVDKTMLPLMKELGVKDSKDLKDPQIIEIARNLIKTIPY 155

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALID---------- 121
           +++ + +  +  + +  + +  + A+ H  A+ +L      V P + LID          
Sbjct: 156 SLLVLKNEKYNSMQEKGMSQGKMKALLHNQAITHLLRKLDGVKPEAILIDQFAEPGVYFN 215

Query: 122 ---GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174
              GR I ++   + +   K + I L++AAASIIA+ +     D+L R A    P  G  
Sbjct: 216 HLKGRDIVKE---RTYFSTKAEGIHLAVAAASIIARYSFLMEMDKLSRAAGMTLPK-GAG 271

Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLT 200
            HV    AK   +I +KG S +   T
Sbjct: 272 PHVDEAAAK---LILKKGASALRTFT 294


>gi|46907447|ref|YP_013836.1| ribonuclease HIII [Listeria monocytogenes serotype 4b str. F2365]
 gi|46880715|gb|AAT04013.1| putative ribonuclease HIII [Listeria monocytogenes serotype 4b str.
           F2365]
          Length = 293

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 33/158 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EKI      
Sbjct: 78  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124
           +++   +  +  + K  +++  + A+ H  A+EN+      V P + LID  +       
Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 197

Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                   I ED+    F   K + + LS+AAASIIA+
Sbjct: 198 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 231


>gi|47458958|ref|YP_015820.1| ribonuclease HII [Mycoplasma mobile 163K]
 gi|47458286|gb|AAT27609.1| ribonuclease HII [Mycoplasma mobile 163K]
          Length = 227

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 29/162 (17%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREEL---YEK 74
           N +   G DE G G    P+V  A+ L+P NI       I DSK ++ KK +E+    +K
Sbjct: 4   NEYVTIGSDETGVGDYLSPIVACAVFLNPENISKINKLDIKDSKLLTDKKIKEIAKELKK 63

Query: 75  ITSSAIISISSASHQYIDK----HNI----HKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           + S +I   S   +  ++K    H I    H  +++ +    +N+  +   A  D ++I 
Sbjct: 64  LVSHSINYFSQKGYNNLNKFFNAHEIKMFLHLKSINFLEQKHQNIDYVIIDAFSDEKNID 123

Query: 127 --------------EDLPCQAFAVIKGDSISLSIAAASIIAK 154
                         +++  +   + K +S+SLS+A ASI+A+
Sbjct: 124 KYIEKLVNNKKFMLQNIKSEKKIIQKAESLSLSVACASILAR 165


>gi|254823518|ref|ZP_05228519.1| ribonuclease HIII [Listeria monocytogenes FSL J1-194]
 gi|254852903|ref|ZP_05242251.1| ribonuclease HIII [Listeria monocytogenes FSL R2-503]
 gi|254932894|ref|ZP_05266253.1| ribonuclease HIII [Listeria monocytogenes HPB2262]
 gi|254992865|ref|ZP_05275055.1| ribonuclease HIII [Listeria monocytogenes FSL J2-064]
 gi|300764377|ref|ZP_07074371.1| ribonuclease HIII [Listeria monocytogenes FSL N1-017]
 gi|258606238|gb|EEW18846.1| ribonuclease HIII [Listeria monocytogenes FSL R2-503]
 gi|293584448|gb|EFF96480.1| ribonuclease HIII [Listeria monocytogenes HPB2262]
 gi|293592738|gb|EFG00499.1| ribonuclease HIII [Listeria monocytogenes FSL J1-194]
 gi|300515029|gb|EFK42082.1| ribonuclease HIII [Listeria monocytogenes FSL N1-017]
 gi|328466622|gb|EGF37757.1| ribonuclease HIII [Listeria monocytogenes 1816]
 gi|332311613|gb|EGJ24708.1| Ribonuclease HIII [Listeria monocytogenes str. Scott A]
          Length = 293

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 33/158 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EKI      
Sbjct: 78  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124
           +++   +  +  + K  +++  + A+ H  A+EN+      V P + LID  +       
Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 197

Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                   I ED+    F   K + + LS+AAASIIA+
Sbjct: 198 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 231


>gi|226223828|ref|YP_002757935.1| ribonuclease HIII [Listeria monocytogenes Clip81459]
 gi|259494076|sp|C1L2D3|RNH3_LISMC RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|225876290|emb|CAS04999.1| Putative ribonuclease HIII [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
          Length = 308

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 33/158 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EKI      
Sbjct: 93  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 152

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124
           +++   +  +  + K  +++  + A+ H  A+EN+      V P + LID  +       
Sbjct: 153 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 212

Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                   I ED+    F   K + + LS+AAASIIA+
Sbjct: 213 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 246


>gi|255521227|ref|ZP_05388464.1| ribonuclease HIII [Listeria monocytogenes FSL J1-175]
          Length = 260

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 33/158 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EKI      
Sbjct: 78  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124
           +++   +  +  + K  +++  + A+ H  A+EN+      V P + LID  +       
Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 197

Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                   I ED+    F   K + + LS+AAASIIA+
Sbjct: 198 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 231


>gi|289808317|ref|ZP_06538946.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
          Typhi str. AG3]
          Length = 50

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/38 (63%), Positives = 28/38 (73%)

Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
          VAG+DEVGRG L G VV AA+ILDP     G+ND +KI
Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDYQKI 49


>gi|290893289|ref|ZP_06556275.1| rnhC protein [Listeria monocytogenes FSL J2-071]
 gi|290557097|gb|EFD90625.1| rnhC protein [Listeria monocytogenes FSL J2-071]
          Length = 293

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 33/158 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EKI      
Sbjct: 78  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124
           +++   +  +  + K  +++  + A+ H  A+EN+      V P + LID  +       
Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 197

Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                   I ED+    F   K + + LS+AAASIIA+
Sbjct: 198 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 231


>gi|34329831|gb|AAQ64005.1| ribonuclease H2 [Homo sapiens]
          Length = 299

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 32/195 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           V G+DE GRG + GP+V A        +       + DSK +   +RE L+ K+  +  +
Sbjct: 30  VLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFV 89

Query: 82  S----------ISSASHQYIDKHNI----HKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
                      IS++   ++ K+N+    H      I +A++   V      +D   +PE
Sbjct: 90  GWALDVLSPNLISTSMLGWV-KYNLNSLSHDTATGLIQYALDQ-GVNVTQVFVDTVGMPE 147

Query: 128 DLPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSH 176
                  Q+F  I      K D++   ++AASI AKV RD+ ++     +K  D   D  
Sbjct: 148 TYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYG 207

Query: 177 VGYPT-AKHQQVIKE 190
            GYP   K +  +KE
Sbjct: 208 SGYPNDPKTKAWLKE 222


>gi|19114596|ref|NP_593684.1| ribonuclease H2 complex subunit Rnh201 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|1723422|sp|Q10236|RNH2A_SCHPO RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
           AltName: Full=Ribonuclease HI large subunit; Short=RNase
           HI large subunit; AltName: Full=Ribonuclease HI subunit
           A
 gi|1204203|emb|CAA93552.1| ribonuclease H2 complex subunit Rnh201 (predicted)
           [Schizosaccharomyces pombe]
          Length = 326

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 29/168 (17%)

Query: 28  GIDEVGRGALAGPVV--VAAIILDPNNIPFGINDSKKISHKKREELYEKITSS------- 78
           G+DE GRG + GP+V  VA   +D +   +G  DSK ++  KREEL + I +        
Sbjct: 67  GVDEAGRGPVLGPMVYAVAYCPVDFDLTNYGFADSKTLASLKREELLKLICNKSNELGKN 126

Query: 79  ---AIISIS-----SASHQYIDKHNI----HKATLDAI---YHAVENLQVIPRSALIDGR 123
              + +SIS     +   +Y +K+N+    H  T+D I   Y +  N+  I    +    
Sbjct: 127 VGWSTMSISARELAAGMLRYRNKYNLNLQAHDTTIDLIKKVYESGINVTEIYVDTVGPPI 186

Query: 124 SIPEDLPC---QAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHK 166
           S  E L     QA   +  K DS+   ++ ASI AKVTRD  +  A +
Sbjct: 187 SYQEKLQAHFPQAKVTVTKKADSLFPIVSLASICAKVTRDIQLECARE 234


>gi|221122753|ref|XP_002163480.1| PREDICTED: similar to ribonuclease H2, large subunit [Hydra
           magnipapillata]
          Length = 339

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 88/197 (44%), Gaps = 41/197 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA---- 79
           GIDE GRG + GP+V +      + I      G  DSK ++ +KR+ L   I ++     
Sbjct: 32  GIDEAGRGPVLGPMVYSVCYCPISMIKKLSDLGFADSKTLTEEKRDNLLSVIENNCDFIG 91

Query: 80  ----IISISSASHQYIDKHNIHKATLDAIYH--AVENLQVIPRSALIDGRSIPE------ 127
               IIS +  S++ + +   +K TL+ I H  A+E    + R  +  G +I E      
Sbjct: 92  WAIKIISPTEISNEMLRR---YKVTLNEISHGAAIE----LTRKTINAGANITEMYVDTV 144

Query: 128 -------DLPCQAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174
                  +   + F  +      K D++   ++AASI AKV RDR ++       D   D
Sbjct: 145 GDASKYQNKLSEVFDGVSVKVTPKADALFPIVSAASICAKVARDRCIQGWQFPEGDIKED 204

Query: 175 SHVGYPT-AKHQQVIKE 190
              GYP   K +Q +K+
Sbjct: 205 YGSGYPADPKTKQWLKD 221


>gi|193709059|ref|XP_001946925.1| PREDICTED: ribonuclease H2 subunit A-like [Acyrthosiphon pisum]
          Length = 312

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 94/210 (44%), Gaps = 39/210 (18%)

Query: 4   NSIPERPHFEL-EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGIN 58
           NS   R   +L E+   EK    + GIDE GRG + GP+V        +N       G  
Sbjct: 23  NSFDVRIESDLPESTTTEK---CILGIDEAGRGPVLGPMVYGTSYCSVDNQAILKTLGCA 79

Query: 59  DSKKISHKKREELYEKITSSA--------IISISSASHQYIDKHNIHKATLDAIYH--AV 108
           DSK +S + R+++++ IT  +        IIS ++ S+    +    K +L+ I H  A+
Sbjct: 80  DSKVLSEQARDDIFDGITKQSEILGWAVHIISPTTISNCSFRRQ---KCSLNEISHNAAI 136

Query: 109 ENLQ-VIPRSA-----LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIA 153
             +Q V+ R        +D    PE    +  ++          K DS+   ++AASI A
Sbjct: 137 GLIQRVLDRGVNICEVFVDTVGPPEKYQEKLLSIFPQLKITVSKKADSLFPIVSAASICA 196

Query: 154 KVTRDRLMR-IAHKKYPDYGFDSHV--GYP 180
           KVTRD  ++     + P    DS+   GYP
Sbjct: 197 KVTRDAALKNWKFIERPGEDIDSNWGSGYP 226


>gi|167394469|ref|XP_001740978.1| ribonuclease H2 subunit A [Entamoeba dispar SAW760]
 gi|165894666|gb|EDR22579.1| ribonuclease H2 subunit A, putative [Entamoeba dispar SAW760]
          Length = 270

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 72/163 (44%), Gaps = 31/163 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITSSAIISISS 85
           GIDE GRG + GP+V +A       I    G +DSK +S   RE+L+  I  SA+   S+
Sbjct: 18  GIDEAGRGPVLGPMVYSAFFTTNTEIISTMGFHDSKILSRTMREKLFSDIKESAVCGFST 77

Query: 86  --ASHQYIDKHNI--HKATLDAI-YHAVENLQVIPRSALIDGRSIP-------------- 126
              +  YI        K +L+ I + AV +  +I +   I+ R I               
Sbjct: 78  RILTPSYISHLMCGPQKVSLNEIAFGAVRD--IIHQIIRINQRKIVHIYCDTVGPSGKYQ 135

Query: 127 -------EDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLM 161
                  +D+      V  K D +   ++AASI AKVTRD  +
Sbjct: 136 MMIANEFKDIKLNQITVCPKADGLYPVVSAASICAKVTRDTCL 178


>gi|321469942|gb|EFX80920.1| hypothetical protein DAPPUDRAFT_230884 [Daphnia pulex]
          Length = 307

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 28/161 (17%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELYEKITS----- 77
           GIDE GRG + GP+V   I   P +        G  DSK ++ ++RE+L+ K+ S     
Sbjct: 34  GIDEAGRGPVLGPMVYG-ITYCPESRAEELKAIGCADSKTLTEEQREKLFGKLDSLQDFV 92

Query: 78  ---SAIISISSASHQYID--KHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPEDL 129
                +IS +S  +      KH++++ + D+    +    +L+    S  +D    PE  
Sbjct: 93  GWAVEVISPNSICNNMFKRLKHSLNEVSHDSAIGLIRKALSLEANITSVFVDTVGPPEKY 152

Query: 130 PCQAFAVIKGDSISLS---------IAAASIIAKVTRDRLM 161
             +  A+  G  I++S         ++AASI AKV RD+ +
Sbjct: 153 QAKLSALFPGIKITVSKKADSLFPVVSAASICAKVARDKAL 193


>gi|16803268|ref|NP_464753.1| ribonuclease HIII [Listeria monocytogenes EGD-e]
 gi|20978687|sp|Q8Y7P5|RNH3_LISMO RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|16410644|emb|CAC99306.1| rnhC [Listeria monocytogenes EGD-e]
          Length = 308

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 33/158 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EKI      
Sbjct: 93  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 152

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124
           +++   +  +  + K  +++  + A+ H  A+EN+      + P + LID  +       
Sbjct: 153 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTYYR 212

Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                   I ED+    F   K + + LS+AAASIIA+
Sbjct: 213 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 246


>gi|291485294|dbj|BAI86369.1| ribonuclease HIII [Bacillus subtilis subsp. natto BEST195]
          Length = 312

 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 91/206 (44%), Gaps = 38/206 (18%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS--- 78
           V G DEVG G   GP+ V    +D   +P     G+ DSK +   +  E+   +  +   
Sbjct: 95  VIGSDEVGTGDYFGPMTVVCAYVDKTMLPLMKELGVKDSKDLKDPQIIEIARNLIKTIPY 154

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALID---------- 121
           +++ + +  +  + +  + +  + A+ H  A+ +L      V P + LID          
Sbjct: 155 SLLVLKNEKYNSMQEKGMSQGKMKALLHNQAITHLLRKLDGVKPEAILIDQFAEPGVYFN 214

Query: 122 ---GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174
              GR I ++   + +   K + I L++AAASIIA+ +     D+L R A    P  G  
Sbjct: 215 HLKGRDIVKE---RTYFSTKAEGIHLAVAAASIIARYSFLMEMDKLSREAGMTLPK-GAG 270

Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLT 200
            HV    AK   +I +KG S +   T
Sbjct: 271 PHVDEAAAK---LILKKGASALRTFT 293


>gi|73986851|ref|XP_542041.2| PREDICTED: similar to Ribonuclease HI large subunit (RNase HI large
           subunit) (RNase H(35)) (Ribonuclease H2) (RNase H2)
           [Canis familiaris]
          Length = 299

 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 28/183 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK------- 74
           V G+DE GRG + GP+V A      + +       + DSK +S  +R+ L+ K       
Sbjct: 30  VLGVDEAGRGPVLGPMVYAICYCPLSRLGDLEALKVADSKTLSESERDRLFVKMEKDRDF 89

Query: 75  ------ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
                 + S  +IS S       + +++   T   +     +  V      +D   +PE 
Sbjct: 90  VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGLPET 149

Query: 129 LP---CQAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177
                 Q F  I      K D++   ++AASI AKV RD+ ++  H  +K  D   D   
Sbjct: 150 YQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKSWHFVEKLQDLDADYGS 209

Query: 178 GYP 180
           GYP
Sbjct: 210 GYP 212


>gi|224499100|ref|ZP_03667449.1| ribonuclease HIII [Listeria monocytogenes Finland 1988]
          Length = 293

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 33/158 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EKI      
Sbjct: 78  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124
           +++   +  +  + K  +++  + A+ H  A+EN+      + P + LID  +       
Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTYYR 197

Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                   I ED+    F   K + + LS+AAASIIA+
Sbjct: 198 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 231


>gi|297618794|ref|YP_003706899.1| ribonuclease HII [Methanococcus voltae A3]
 gi|297377771|gb|ADI35926.1| ribonuclease HII [Methanococcus voltae A3]
          Length = 264

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 87/190 (45%), Gaps = 34/190 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN-------IPFGINDSKKISHKKREELYEKITSS 78
           V G+DE GRG + GP+V+A ++L  +N           + DSKK+S KKRE LY++I   
Sbjct: 19  VVGLDEAGRGPVIGPMVIAGVLLKMDNKENAKTFYDLDLKDSKKLSKKKRETLYKEIQKL 78

Query: 79  AIISISSASHQYIDKH----NIHKATLDA-----------IYHAVENLQVIPRSALIDGR 123
           A +     + + ID      N++K  L+            IY   EN +       ID  
Sbjct: 79  AKVEKVIITAKEIDAQMNIINLNKIELNGFSSIINKFYKDIYGLDENKRDSGFLTYIDAC 138

Query: 124 SIPE-DLPCQAFAVIKGDSISLS-----------IAAASIIAKVTRDRLMRIAHKKYPDY 171
           S  E     Q  A +   +I L            ++AASIIAKV RD ++   ++KY   
Sbjct: 139 SSNETSFSNQLKAKLINKNIDLIAEHKADDNYKIVSAASIIAKVNRDNIIDSYNEKYEAL 198

Query: 172 GFDSHVGYPT 181
           G+    GYP+
Sbjct: 199 GYTIGSGYPS 208


>gi|47095070|ref|ZP_00232683.1| ribonuclease HIII, putative [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254830018|ref|ZP_05234673.1| ribonuclease HIII [Listeria monocytogenes 10403S]
 gi|254898611|ref|ZP_05258535.1| ribonuclease HIII [Listeria monocytogenes J0161]
 gi|254911900|ref|ZP_05261912.1| ribonuclease HIII [Listeria monocytogenes J2818]
 gi|254936225|ref|ZP_05267922.1| rnhC [Listeria monocytogenes F6900]
 gi|284801548|ref|YP_003413413.1| ribonuclease HIII [Listeria monocytogenes 08-5578]
 gi|284994690|ref|YP_003416458.1| ribonuclease HIII [Listeria monocytogenes 08-5923]
 gi|47016688|gb|EAL07608.1| ribonuclease HIII, putative [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258608815|gb|EEW21423.1| rnhC [Listeria monocytogenes F6900]
 gi|284057110|gb|ADB68051.1| ribonuclease HIII [Listeria monocytogenes 08-5578]
 gi|284060157|gb|ADB71096.1| ribonuclease HIII [Listeria monocytogenes 08-5923]
 gi|293589858|gb|EFF98192.1| ribonuclease HIII [Listeria monocytogenes J2818]
          Length = 293

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 33/158 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EKI      
Sbjct: 78  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124
           +++   +  +  + K  +++  + A+ H  A+EN+      + P + LID  +       
Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTYYR 197

Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                   I ED+    F   K + + LS+AAASIIA+
Sbjct: 198 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 231


>gi|159118024|ref|XP_001709231.1| Ribonuclease HI, large sub [Giardia lamblia ATCC 50803]
 gi|157437347|gb|EDO81557.1| Ribonuclease HI, large sub [Giardia lamblia ATCC 50803]
          Length = 243

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 95/230 (41%), Gaps = 53/230 (23%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKREELYEKI--- 75
           + GIDE GRG + GP+V   I   P  +         G+ DSK +S   RE +Y ++   
Sbjct: 2   IVGIDEAGRGPVCGPLVY-GIAWMPAEVYQTGILEKLGVTDSKALSANTREHIYNRLQDL 60

Query: 76  ------TSSAIISISSASHQYIDKH--NIHKATLDA---------IYHAVENLQ---VIP 115
                  ++AI+S    S   +  H  +++  + +A         I H +E++    V P
Sbjct: 61  PKEDFGCNTAIVSADQISRAMLAPHKTSLNLLSFEAARSLLYQLFISHEIEHVYIDLVGP 120

Query: 116 RSALIDGRSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAH--------- 165
            S       I E +P  A  +  K D+      AASI+AKV RDR ++            
Sbjct: 121 ESQY--AAYIRELMPSIALTICAKADAKYPITGAASIVAKVIRDRNIKPQWGSGYPSDPK 178

Query: 166 -KKYPD------YGFDSHV--GYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
            KKY D      YGF +H+   + T K       K   C+  +   PL N
Sbjct: 179 TKKYLDKTCHGIYGFPTHIRHSWETIKRIYDTASKCVKCVF-IADTPLEN 227


>gi|282908430|ref|ZP_06316261.1| LOW QUALITY PROTEIN: ribonuclease HIII [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282328095|gb|EFB58377.1| LOW QUALITY PROTEIN: ribonuclease HIII [Staphylococcus aureus
           subsp. aureus WW2703/97]
          Length = 247

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 30/168 (17%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G DE G G   GP+ V A  +   ++P     G++DSKK++  K  EL E++ +    S+
Sbjct: 83  GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 142

Query: 84  SSASHQYIDKHNIHKAT------LDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127
            +  +   +K+NI +A       + A+ H  A++N L+ I  S L    ID  +  E   
Sbjct: 143 LTLHN---EKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 199

Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
                   LP +     KG+S SL+IA ASII++      M    KKY
Sbjct: 200 HYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFITYMDQISKKY 247


>gi|254828588|ref|ZP_05233275.1| rnhC [Listeria monocytogenes FSL N3-165]
 gi|258600986|gb|EEW14311.1| rnhC [Listeria monocytogenes FSL N3-165]
          Length = 293

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 33/158 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EKI      
Sbjct: 78  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124
           +++   +  +  + K  +++  + A+ H  A+EN+      + P + LID  +       
Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTYYR 197

Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                   I ED+    F   K + + LS+AAASIIA+
Sbjct: 198 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 231


>gi|16800260|ref|NP_470528.1| ribonuclease HIII [Listeria innocua Clip11262]
 gi|20978705|sp|Q92CI0|RNH3_LISIN RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|16413650|emb|CAC96422.1| rnhC [Listeria innocua Clip11262]
          Length = 308

 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 33/158 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK---ITSS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EK   I   
Sbjct: 93  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPIVPH 152

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124
           +++   +  +  + K  +++  + A+ H  A+EN+      + P + LID  +       
Sbjct: 153 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTYYR 212

Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                   I ED+    F   K + + LS+AAASIIA+
Sbjct: 213 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 246


>gi|224502477|ref|ZP_03670784.1| ribonuclease HIII [Listeria monocytogenes FSL R2-561]
          Length = 281

 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 33/158 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EKI      
Sbjct: 66  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 125

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124
           +++   +  +  + K  +++  + A+ H  A+EN+      + P + LID  +       
Sbjct: 126 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTYYR 185

Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                   I ED+    F   K + + LS+AAASIIA+
Sbjct: 186 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 219


>gi|327281022|ref|XP_003225249.1| PREDICTED: ribonuclease H2 subunit A-like [Anolis carolinensis]
          Length = 300

 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 30/163 (18%)

Query: 28  GIDEVGRGALAGPVVVA----AIILDPNNIPFGINDSKKISHKKREELYEKITSSA---- 79
           GIDE GRG + GP+V       +    +     + DSK ++  +RE+L+EK+ ++     
Sbjct: 32  GIDEAGRGPVLGPMVYGICYCPVARQGDLEAIKVADSKTLTEAQREQLFEKLDAAKDFVG 91

Query: 80  ----IIS--ISSASHQYIDKHNI----HKATLDAIYHAVEN-LQVIPRSALIDG------ 122
               I+S    S S Q   K+N+    H   +  I HA+++ +QV      +D       
Sbjct: 92  WALHILSPNFISTSMQRRAKYNLNALSHDTAIGLIQHALDSGVQVA--EVFVDTVGPAEK 149

Query: 123 --RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMR 162
               + +  P     V  K DS+   ++AASI AKV RDR+++
Sbjct: 150 YQEKLKQQFPGLEVTVKPKADSLFPVVSAASICAKVARDRVVK 192


>gi|300173789|ref|YP_003772955.1| ribonuclease hiii [Leuconostoc gasicomitatum LMG 18811]
 gi|299888168|emb|CBL92136.1| ribonuclease hiii [Leuconostoc gasicomitatum LMG 18811]
          Length = 309

 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 32/177 (18%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA 79
           W V G DEVG GA  GP+  AA+ +   NI +    GI DSK ++  K  ++   I +  
Sbjct: 94  WSVLGSDEVGAGAYFGPLTTAAVFVAKENISWVRQLGIADSKTLTDAKMRQIAPDIIAKL 153

Query: 80  ---IISISSASHQYIDKHNIHKATLDAIYH------AVENLQ-VIPRSALID-------- 121
              ++++    +  + K+N +   + AI H       +E +   +P   LID        
Sbjct: 154 PHHVVNLMPEKYNILQKNN-NVNQMKAISHNFALGKVLEKIAPTVPTGILIDQFAQESTY 212

Query: 122 ----GRSIPEDLPCQ-AFAVIKGDSISLSIAAASIIAKVTR----DRLMRIAHKKYP 169
                 +   ++  Q  +   KG+   LS+AAASI+A+V      D+L   A  + P
Sbjct: 213 FKYLNNANQSNIVQQNVYFTTKGEQYHLSVAAASILARVVELDSLDKLSDEAGMRLP 269


>gi|261402294|ref|YP_003246518.1| ribonuclease HII [Methanocaldococcus vulcanius M7]
 gi|261369287|gb|ACX72036.1| ribonuclease HII [Methanocaldococcus vulcanius M7]
          Length = 233

 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 83/188 (44%), Gaps = 36/188 (19%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81
           + G+DE GRG + GP+VV A  ++ +        G+ DSK +S  KR +L +++     +
Sbjct: 5   IVGVDEAGRGPVLGPMVVCAFAIEKDREDLLRDLGVKDSKLLSKSKRSQLKKQLERIGYV 64

Query: 82  S----ISSASHQYIDKHNIHKATLDAIYHAV-----------ENLQVIPRSALIDGRSIP 126
                 ++  +  ++K N+++  ++A    +           E L++   +   + +   
Sbjct: 65  KKKILTANEINTLMNKINLNEIEINAFSEVIMGLINDLNLKDEYLEIYVDACSTNAKKFE 124

Query: 127 -------------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173
                        ++L  +  A  K D     +++ASIIAK  RD ++    KKY + G 
Sbjct: 125 NELKNRIKDIENQKNLKIKVIAEHKADLKYPIVSSASIIAKADRDEIIEQYKKKYGEIG- 183

Query: 174 DSHVGYPT 181
               GYP+
Sbjct: 184 ---SGYPS 188


>gi|183231893|ref|XP_001913636.1| ribonuclease H2 subunit A [Entamoeba histolytica HM-1:IMSS]
 gi|169802278|gb|EDS89588.1| ribonuclease H2 subunit A, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 354

 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 29/162 (17%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITSSAIISISS 85
           GIDE GRG + GP+V +A       +    G +DSK +S   RE+L+  I  S +   S+
Sbjct: 18  GIDEAGRGPVLGPMVYSAFFTTNTEVISTMGFHDSKILSRTMREKLFTDIKESGVCGFST 77

Query: 86  --ASHQYIDKHNI--HKATLDAI-YHAVENL--QVIPRS-------------------AL 119
              +  YI +      K +L+ I + AV ++  Q+I  S                   A+
Sbjct: 78  RILTPSYISQMMCGPQKVSLNEIAFSAVRDIIHQIIRTSQRKIVHIYCDTVGPSKKYQAM 137

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM 161
           I      E    Q     K D +   ++AASI AKVTRD  +
Sbjct: 138 I-ANEFKEVKLSQITVCPKADGLYPVVSAASICAKVTRDTCL 178


>gi|134114978|ref|XP_773787.1| hypothetical protein CNBH2390 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256415|gb|EAL19140.1| hypothetical protein CNBH2390 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 326

 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 43/179 (24%)

Query: 26  VAGIDEVGRGALAGPVVVAA----IILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG + GP+V AA    +   P     G +DSK +S + R+ L+E       +
Sbjct: 38  IMGIDEAGRGPVLGPMVYAAAYCPLSFKPILESIGFDDSKALSAETRQTLWESFDVHPPL 97

Query: 82  SISSA--SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED----------- 128
             SS+  S Q I  + + K  ++    A +    + ++AL  G ++ E            
Sbjct: 98  CYSSSTLSPQDISSNMLRKVPINLNRQAEDATVGLIQAALNRGINVTEASFSCSLAASCW 157

Query: 129 -------------------------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLM 161
                                     P   F V  K DS+   + AASI+AKVTRDR +
Sbjct: 158 LTICLKCYVDALGPAPQWQARLTAIFPTIKFTVCPKADSLFKIVGAASIVAKVTRDRYV 216


>gi|167378158|ref|XP_001734698.1| ribonuclease H2 subunit A [Entamoeba dispar SAW760]
 gi|165903720|gb|EDR29164.1| ribonuclease H2 subunit A, putative [Entamoeba dispar SAW760]
          Length = 270

 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 71/163 (43%), Gaps = 31/163 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITSSAIISISS 85
           GIDE GRG + GP+V +A       I    G +DSK +S   RE+L+  I  SA+   S+
Sbjct: 18  GIDEAGRGPVLGPMVYSAFFTTNTEIISTMGFHDSKILSRTMREKLFSDIKESAVCGFST 77

Query: 86  --ASHQYIDKHNI--HKATLDAI-YHAVENLQVIPRSALIDGRSIP-------------- 126
              +  YI        K +L+ I + AV +  +I +   I  R I               
Sbjct: 78  RILTPSYISHLMCGPQKVSLNEIAFGAVRD--IIHQIIRISQRKIVHIYCDTVGPSGKYQ 135

Query: 127 -------EDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLM 161
                  +D+      V  K D +   ++AASI AKVTRD  +
Sbjct: 136 MMIANEFKDIKLNQITVCPKADGLYPVVSAASICAKVTRDTCL 178


>gi|311248923|ref|XP_003123380.1| PREDICTED: ribonuclease H2 subunit A-like [Sus scrofa]
          Length = 301

 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 28/183 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK------- 74
           V G+DE GRG + GP+V A      + +       + DSK +S  +R+ L+ K       
Sbjct: 30  VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFAKMEEDGDF 89

Query: 75  ------ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
                 + S  +IS S       + +++   T   +     +  V      +D   +PE 
Sbjct: 90  VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGLPET 149

Query: 129 LP---CQAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177
                 Q F  I      K D++   ++AASI AKV RD+ +R     +K  D   D   
Sbjct: 150 YQERLQQRFPDIEVTVKAKADALYPVVSAASICAKVARDQAVRNWQFVEKLQDLDTDYGS 209

Query: 178 GYP 180
           GYP
Sbjct: 210 GYP 212


>gi|259047147|ref|ZP_05737548.1| ribonuclease HIII [Granulicatella adiacens ATCC 49175]
 gi|259036197|gb|EEW37452.1| ribonuclease HIII [Granulicatella adiacens ATCC 49175]
          Length = 270

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 24/155 (15%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS-- 77
           W V G DEVG GA  GP+ VA+  +   NIP     G+ DSK ++ ++      KI    
Sbjct: 56  WSVMGSDEVGNGAYFGPLTVASAYVSKENIPLLKKMGVKDSKDLTDEQIRAFVPKIKEVI 115

Query: 78  -SAIISISSASH---QYIDKHNIHKATLDAIYHAVENLQVIPRSA---LIDGRSIPE--- 127
              ++++    +   Q +   N  KA L      + + +++P S    LID    PE   
Sbjct: 116 PYKLLTLWPEKYNEVQQVKNLNEMKALLHNQALRLLSEKIMPESPEGFLIDQFCKPELYY 175

Query: 128 ----DLPC----QAFAVIKGDSISLSIAAASIIAK 154
                 P     + + + KG+S  +++AAAS+IA+
Sbjct: 176 RYLKGQPLVDKNKTYFITKGESHHIAVAAASMIAR 210


>gi|332252995|ref|XP_003275638.1| PREDICTED: ribonuclease H2 subunit A-like [Nomascus leucogenys]
          Length = 299

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 28/193 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK------- 74
           V G+DE GRG + GP+V A      + +       + DSK +   +RE L+ K       
Sbjct: 30  VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLLESERERLFAKMEDRDFV 89

Query: 75  -----ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
                + S  +IS S       + +++   T   +     +  V      +D   +PE  
Sbjct: 90  GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETY 149

Query: 130 PC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHVG 178
                Q+F  I      K D++   ++AASI AKV RD+ ++     +K  D   D   G
Sbjct: 150 QAWLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSG 209

Query: 179 YPT-AKHQQVIKE 190
           YP   K +  +KE
Sbjct: 210 YPNDPKTKAWLKE 222


>gi|227431089|ref|ZP_03913147.1| ribonuclease HIII [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227353129|gb|EEJ43297.1| ribonuclease HIII [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 303

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 38/164 (23%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA 79
           W V G DEVG GA  GP+  AA+ +   N+ +    GI DSK ++  + +++  +I +  
Sbjct: 89  WSVLGSDEVGAGAYFGPLTTAAVYVSQENLEWVRALGIADSKTLTDDRMKKIAPQIIAQL 148

Query: 80  ---IISISSASHQYIDK-HNIHKATLDAIYHAVENLQVI-------PRSALID------- 121
              ++++    +  +   HN+++  + AI H     +V+       P++ LID       
Sbjct: 149 PHHVVNLMPEKYNQLQPLHNVNQ--MKAISHNFALGKVLDKIFPITPQAILIDQFAQQST 206

Query: 122 ----------GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKV 155
                      R I E++    +   KG+   LS+AAASI+A+V
Sbjct: 207 YFNYLKNAKQQRIIHENV----YFTTKGEQYHLSVAAASILARV 246


>gi|315282003|ref|ZP_07870510.1| ribonuclease hiii [Listeria marthii FSL S4-120]
 gi|313614348|gb|EFR87985.1| ribonuclease hiii [Listeria marthii FSL S4-120]
          Length = 293

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 33/158 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK---ITSS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EK   I   
Sbjct: 78  VVGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPIVPH 137

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124
           +++   +  +  + +  +++  + A+ H  A+EN+      V P + LID  +       
Sbjct: 138 SVLLCPNPKYNELQQRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 197

Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                   + ED+    F   K + + LS+AAASIIA+
Sbjct: 198 YLAQEPSIVREDV----FFATKAEGLHLSVAAASIIAR 231


>gi|308159908|gb|EFO62424.1| Ribonuclease HI, large sub [Giardia lamblia P15]
          Length = 243

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 77/187 (41%), Gaps = 44/187 (23%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKREELYEKI--- 75
           + GIDE GRG + GP+V   I   P  +         G+ DSK +S   RE +Y K+   
Sbjct: 2   IVGIDEAGRGPVCGPLVY-GIAWMPAEVYQTGILEKLGVTDSKALSADAREHIYSKLHDL 60

Query: 76  ------TSSAIISISSASHQYIDKHNI------HKATLDAIYHAVENLQ--------VIP 115
                  ++AI+S    S   +  H         +A    +Y    + +        V P
Sbjct: 61  PKEDFGCNTAIVSADQISRAMLAPHKTSLNLLSFEAARSLLYQLFTSYEIEHVYIDLVSP 120

Query: 116 RSALIDGRSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174
            S       I E +P  A  +  K D+      AASIIAKVTRD+ ++      P +G  
Sbjct: 121 ESQY--ATYIHELMPNIALTICAKADAKYPITGAASIIAKVTRDKHIK------PQWG-- 170

Query: 175 SHVGYPT 181
              GYP+
Sbjct: 171 --SGYPS 175


>gi|256078514|ref|XP_002575540.1| ribonuclease hi large subunit [Schistosoma mansoni]
 gi|238660781|emb|CAZ31773.1| ribonuclease hi large subunit, putative [Schistosoma mansoni]
          Length = 290

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 32/169 (18%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-----S 78
           GIDE GRG + GP+V A  +   + +      G+ DSK ++  +RE+L +++ +     S
Sbjct: 3   GIDEAGRGPVLGPMVYACALSPISQLNELETIGLADSKTLNENQREKLLKEMLNKCDWIS 62

Query: 79  AIISISSA---SHQYIDKHNIHKATLDAIYH--AVENLQVIPRSAL------IDGRSIPE 127
           A++ + S    + + +DK    K +L+ I H  A++ +Q +  S +      +D     E
Sbjct: 63  AVVHVISPVYITEKMLDK---SKTSLNVISHDSAIQLIQSVLDSGVNLVEVYVDTVGKAE 119

Query: 128 DLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
               +   +          K D     ++AASI AKVTRDR++++  K+
Sbjct: 120 HYETKLQNLFPQLKIRVESKADDTYPIVSAASIFAKVTRDRVLQMWPKE 168


>gi|116872599|ref|YP_849380.1| ribonuclease HIII [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116741477|emb|CAK20601.1| ribonuclease HIII [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 293

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 33/158 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK---ITSS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EK   I   
Sbjct: 78  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPIVPH 137

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVENL--QVIPR---SALIDGRS------- 124
           +++   +  +  + K  +++  + A+ H  A+EN+  ++ PR   + LID  +       
Sbjct: 138 SVLLCPNPKYNELQKKGMNQGQMKALLHNRAIENVLKKLAPRKPEAILIDQFAEKNTYYR 197

Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                   I ED+    F   K + + LS+AAASIIA+
Sbjct: 198 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 231


>gi|289192478|ref|YP_003458419.1| ribonuclease HII [Methanocaldococcus sp. FS406-22]
 gi|288938928|gb|ADC69683.1| ribonuclease HII [Methanocaldococcus sp. FS406-22]
          Length = 230

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 36/188 (19%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITS---- 77
           V GIDE GRG + GP+VV A  +    +      G+ DSK+++  KR  L + +      
Sbjct: 3   VIGIDEAGRGPVLGPMVVCAFAIEKDKEEELKKLGVRDSKELTKNKRAYLKKLLEDLGYV 62

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYHAVENL-----------QVIPRSALIDGRSIP 126
             +I  +   +Q +   N+++  ++A     ENL           ++   +   + +   
Sbjct: 63  EKLILEAEKINQLMSTINLNEIEINAFSKVAENLIEKLGIKDEKIEIYLDACSTNAKKFE 122

Query: 127 EDLPCQAFAVIKGDSISLSI-------------AAASIIAKVTRDRLMRIAHKKYPDYGF 173
            D   +   +IK  ++++ I             +AASIIAK  RD ++    K Y D G 
Sbjct: 123 NDFKEKLDNIIKERNLNVKIIAEHKADAKYSVVSAASIIAKAERDEIIDNYKKIYGDIG- 181

Query: 174 DSHVGYPT 181
               GYP+
Sbjct: 182 ---SGYPS 186


>gi|321312395|ref|YP_004204682.1| ribonuclease HIII [Bacillus subtilis BSn5]
 gi|320018669|gb|ADV93655.1| ribonuclease HIII [Bacillus subtilis BSn5]
          Length = 312

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 38/206 (18%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS--- 78
           V G DEVG G   GP+ V    +D   +P     G+ DSK +   +  E+   +  +   
Sbjct: 95  VIGSDEVGTGDYFGPMTVVCAYVDKTMLPLMKELGVKDSKDLKDPQIIEIARNLIKTIPY 154

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALID---------- 121
           +++ + +  +  + +  + +  + A+ H  A+ +L      + P + LID          
Sbjct: 155 SLLVLKNEKYNSMQEKGMSQGKMKALLHNQAITHLLRKMDGIKPEAILIDQFAEPGVYFN 214

Query: 122 ---GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174
              GR I ++   + +   K + I L++AAASIIA+ +     D+L R A    P  G  
Sbjct: 215 HLKGRDIVKE---RTYFSTKAEGIHLAVAAASIIARYSFLMEMDKLSREAGMTLPK-GAG 270

Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLT 200
            HV    AK   +I +KG S +   T
Sbjct: 271 PHVDEAAAK---LILKKGASALRTFT 293


>gi|116618810|ref|YP_819181.1| ribonuclease HIII [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
 gi|122270990|sp|Q03VG4|RNH3_LEUMM RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|116097657|gb|ABJ62808.1| Ribonuclease HIII [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 303

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 38/164 (23%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA 79
           W V G DEVG GA  GP+  AA+ +   N+ +    GI DSK ++  + +++  +I +  
Sbjct: 89  WSVLGSDEVGAGAYFGPLTTAAVYVSQENLEWVRALGIADSKTLTDDRMKKIAPQIIAKL 148

Query: 80  ---IISISSASHQYIDK-HNIHKATLDAIYHAVENLQVI-------PRSALID------- 121
              ++++    +  +   HN+++  + AI H     +V+       P++ LID       
Sbjct: 149 PHHVVNLMPEKYNQLQPLHNVNQ--MKAISHNFALGKVLDKISPITPQAILIDQFAQQST 206

Query: 122 ----------GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKV 155
                      R I E++    +   KG+   LS+AAASI+A+V
Sbjct: 207 YFNYLKNAKQQRIIHENV----YFTTKGEQYHLSVAAASILARV 246


>gi|158297564|ref|XP_317779.3| AGAP007741-PA [Anopheles gambiae str. PEST]
 gi|157015256|gb|EAA12465.3| AGAP007741-PA [Anopheles gambiae str. PEST]
          Length = 342

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 29/165 (17%)

Query: 28  GIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS----- 78
           G+DE GRG + GP+V  +A   L   +I    G  DSK+++ +KR+++++++        
Sbjct: 69  GVDEAGRGPVLGPMVYGIAFCPLSKKDILKQLGFADSKQLTEEKRDQIFDEMNRKDFAKT 128

Query: 79  ----AIISIS----SASHQYIDKHNIHKATLDA---IYHAVENLQVIPRSALIDGRSIPE 127
               A+ +IS    S       KH++++ ++D+   + ++  +  V      +D    PE
Sbjct: 129 ALGWAVEAISPNVISMCMLRRTKHSLNEVSMDSAIGLINSAIDAGVNIAEVYVDTVGPPE 188

Query: 128 DLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRI 163
               +  A+          K DS    ++AASI AKVTRD  +++
Sbjct: 189 KYQAKLKAIFPKFKITVAKKADSTYPIVSAASIAAKVTRDHALKV 233


>gi|296331590|ref|ZP_06874059.1| ribonuclease HIII [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305675451|ref|YP_003867123.1| ribonuclease HIII [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151185|gb|EFG92065.1| ribonuclease HIII [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413695|gb|ADM38814.1| ribonuclease HIII [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 313

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 38/206 (18%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS--- 78
           V G DEVG G   GP+ V    +D   +P     G+ DSK +   +  E+   +  +   
Sbjct: 96  VIGSDEVGTGDYFGPMTVVCAYVDKTMLPLMKELGVKDSKDLKDPQIIEIARNLIKTIPY 155

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALID---------- 121
           +++ + +  +  + +  + +  + A+ H  A+ +L        P + LID          
Sbjct: 156 SLLVLKNEKYNSMQEKGMSQGKMKALLHNQAITHLLRKMDGAKPEAILIDQFAEPGVYFN 215

Query: 122 ---GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174
              GR I  +   + +   K + I LS+AAASIIA+ +     D+L R A    P  G  
Sbjct: 216 HLKGRDIVRE---RTYFSTKAEGIHLSVAAASIIARYSFLMEMDKLSREAGMTLPK-GAG 271

Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLT 200
            HV    AK   +I +KG S +   T
Sbjct: 272 PHVDEAAAK---LILKKGASALRTFT 294


>gi|84999888|ref|XP_954665.1| ribonuclease h1 large subunit [Theileria annulata]
 gi|65305660|emb|CAI73985.1| ribonuclease h1 large subunit, putative [Theileria annulata]
          Length = 277

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 89/194 (45%), Gaps = 41/194 (21%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIIL----DPNNI---PFGINDSKKISHKKREELYE 73
           K+ + + GIDE GRG + GP+V          + N+I      ++DSKK+S   RE  + 
Sbjct: 20  KSDYVILGIDEAGRGPVLGPMVYGGFFCTKGDNCNSILKNKIKVDDSKKLSESMRENKFY 79

Query: 74  KITS--------SAIISISSASHQYI--DKHNI----HKATLDAIYHAVE---NLQVIPR 116
           ++          + +I+    S++ +  +K+N+    H   +  I H +    NL+ +  
Sbjct: 80  QLNDPDHPFGVVAEVITPQYISYKMLQREKYNLNEISHDTAISIIRHVLSHGYNLKEVYI 139

Query: 117 SALIDGRSIPEDL----PCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171
            A+         L    P   F+V  K DSI  +++AASI+AKV RD +++        +
Sbjct: 140 DAVGTVNKYESKLSKMFPKIQFSVREKADSIYPTVSAASIVAKVIRDNIIKT-------W 192

Query: 172 GFDSHV-----GYP 180
            FD  V     GYP
Sbjct: 193 KFDFEVENIGSGYP 206


>gi|311069353|ref|YP_003974276.1| ribonuclease HIII [Bacillus atrophaeus 1942]
 gi|310869870|gb|ADP33345.1| ribonuclease HIII [Bacillus atrophaeus 1942]
          Length = 313

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 38/210 (18%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
            M  V G DEVG G   GP+ VA   +D + +      G+ DSK +   +  E+ + +  
Sbjct: 93  GMMSVIGSDEVGTGDYFGPMTVACAYVDKSKLALMKELGVKDSKHLKDPQIIEIAKSLIK 152

Query: 78  S---AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALID------ 121
           +   +++ +++  +  + +  + +  + A+ H  A+ +L      + P + LID      
Sbjct: 153 TIPYSLLILNNEKYNKLQEKGMSQGKMKALLHNQAIGHLLKKMDGIKPEAILIDQFAEPS 212

Query: 122 -------GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPD 170
                  G+ I ++   + +   K + I LS+AAASIIA+ +     D+L R A    P 
Sbjct: 213 IYFKHLAGKDIVKE---RTYFSTKAEGIHLSVAAASIIARYSFLMEMDKLSREAGMVIPK 269

Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
            G   HV    AK   +I +KG S +   T
Sbjct: 270 -GAGPHVDEACAK---LILKKGESALRTFT 295


>gi|313624050|gb|EFR94134.1| ribonuclease hiii [Listeria innocua FSL J1-023]
          Length = 293

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 25/154 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK---ITSS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EK   I   
Sbjct: 78  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPIVPH 137

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124
           +++   +  +  + +  +++  + A+ H  A+EN+      V P + LID  +       
Sbjct: 138 SVLLCPNPKYNELQQRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 197

Query: 125 ----IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                P  +    F   K + + LS+AAASIIA+
Sbjct: 198 YLAKEPSIIRDDVFFATKAEGLHLSVAAASIIAR 231


>gi|58037175|ref|NP_081463.1| ribonuclease H2 subunit A [Mus musculus]
 gi|85541053|sp|Q9CWY8|RNH2A_MOUSE RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
           AltName: Full=Ribonuclease HI large subunit; Short=RNase
           HI large subunit; AltName: Full=Ribonuclease HI subunit
           A
 gi|312208159|pdb|3P5J|A Chain A, The Structure Of The Human Rnase H2 Complex Defines Key
           Interaction Interfaces Relevant To Enzyme Function And
           Human Disease
 gi|23273263|gb|AAH38158.1| Ribonuclease H2, large subunit [Mus musculus]
 gi|74138850|dbj|BAE27230.1| unnamed protein product [Mus musculus]
          Length = 301

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 74/184 (40%), Gaps = 28/184 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK------- 74
           V G+DE GRG + GP+V A      + +       + DSK ++  +RE L+ K       
Sbjct: 30  VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDF 89

Query: 75  ------ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
                 + S  +IS S       + +++   T   +     +  V      +D   +PE 
Sbjct: 90  VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPET 149

Query: 129 LPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177
                 Q F  I      K DS+   ++AASI AKV RD+ ++     +   D   D   
Sbjct: 150 YQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGS 209

Query: 178 GYPT 181
           GYP 
Sbjct: 210 GYPN 213


>gi|48145799|emb|CAG33122.1| JUNB [Homo sapiens]
          Length = 299

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 82/194 (42%), Gaps = 30/194 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           V G+DE GRG + GP+V A        +       + DSK +   +RE L+ K+  +  +
Sbjct: 30  VLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFV 89

Query: 82  SIS---------SASHQYIDKHNI----HKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
             +         S S     K+N+    H      I +A++   V      +D   +PE 
Sbjct: 90  GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQ-GVNVTQVFVDTVGMPET 148

Query: 129 LPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177
                 Q+F  I      K D++   ++AASI AKV RD+ ++     +K  D   D   
Sbjct: 149 YQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGS 208

Query: 178 GYPT-AKHQQVIKE 190
           GYP   K +  +KE
Sbjct: 209 GYPNDPKTKAWLKE 222


>gi|12845627|dbj|BAB26828.1| unnamed protein product [Mus musculus]
          Length = 301

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 74/184 (40%), Gaps = 28/184 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK------- 74
           V G+DE GRG + GP+V A      + +       + DSK ++  +RE L+ K       
Sbjct: 30  VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDF 89

Query: 75  ------ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
                 + S  +IS S       + +++   T   +     +  V      +D   +PE 
Sbjct: 90  VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDRNVNVTQVFVDTVGMPET 149

Query: 129 LPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177
                 Q F  I      K DS+   ++AASI AKV RD+ ++     +   D   D   
Sbjct: 150 YQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGS 209

Query: 178 GYPT 181
           GYP 
Sbjct: 210 GYPN 213


>gi|71031853|ref|XP_765568.1| ribonuclease H1 large subunit [Theileria parva strain Muguga]
 gi|68352525|gb|EAN33285.1| ribonuclease H1 large subunit, putative [Theileria parva]
          Length = 277

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 41/189 (21%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL----DPNNI---PFGINDSKKISHKKREELYEKITS- 77
           + GIDE GRG + GP+V          D  +I      ++DSKK++   RE  + ++   
Sbjct: 25  ILGIDEAGRGPVLGPMVYGGFFCIKGDDCKSILKNKIRVDDSKKLTETMRENKFYQLNDP 84

Query: 78  -------SAIISISSASHQYI--DKHNI----HKATLDAIYHAVE---NLQVIPRSALID 121
                  + +I+    S++ +  DK+N+    H   +  I H ++   NL+ +   A+  
Sbjct: 85  NYPFGVVAEVITPQYISYKMLQRDKYNLNEISHDTAISIIRHVLDHGYNLKEVYIDAVGT 144

Query: 122 GRSIPEDL----PCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
                  L    P   F+V  K DSI  +++AASI+AKV RD +++       ++ FD  
Sbjct: 145 VNKYEAKLSKLFPKIHFSVREKADSIYPTVSAASIVAKVIRDNIIK-------NWKFDFE 197

Query: 177 V-----GYP 180
           V     GYP
Sbjct: 198 VENIGSGYP 206


>gi|329725159|gb|EGG61648.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 21172]
          Length = 318

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G DE G G   GP+ V A  +   ++P     G++DSKK++  K  EL E++ +    S+
Sbjct: 105 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVAFIPHSL 164

Query: 84  SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127
            +  +   DK+NI +A       + A+ H  A++N L+ I  S L    ID  +  E   
Sbjct: 165 LTLHN---DKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 221

Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154
                   LP +     KG+S SL+IA ASII++
Sbjct: 222 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 255


>gi|38455391|ref|NP_006388.2| ribonuclease H2 subunit A [Homo sapiens]
 gi|20981704|sp|O75792|RNH2A_HUMAN RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
           AltName: Full=Aicardi-Goutieres syndrome 4 protein;
           Short=AGS4; AltName: Full=RNase H(35); AltName:
           Full=Ribonuclease HI large subunit; Short=RNase HI large
           subunit; AltName: Full=Ribonuclease HI subunit A
 gi|15079910|gb|AAH11748.1| Ribonuclease H2, subunit A [Homo sapiens]
 gi|119604719|gb|EAW84313.1| ribonuclease H2, large subunit [Homo sapiens]
 gi|189067523|dbj|BAG37728.1| unnamed protein product [Homo sapiens]
          Length = 299

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 82/194 (42%), Gaps = 30/194 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           V G+DE GRG + GP+V A        +       + DSK +   +RE L+ K+  +  +
Sbjct: 30  VLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFV 89

Query: 82  SIS---------SASHQYIDKHNI----HKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
             +         S S     K+N+    H      I +A++   V      +D   +PE 
Sbjct: 90  GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQ-GVNVTQVFVDTVGMPET 148

Query: 129 LPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177
                 Q+F  I      K D++   ++AASI AKV RD+ ++     +K  D   D   
Sbjct: 149 YQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGS 208

Query: 178 GYPT-AKHQQVIKE 190
           GYP   K +  +KE
Sbjct: 209 GYPNDPKTKAWLKE 222


>gi|3334761|emb|CAB09725.1| ribonuclease HI large subunit [Homo sapiens]
          Length = 299

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 82/194 (42%), Gaps = 30/194 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           V G+DE GRG + GP+V A        +       + DSK +   +RE L+ K+  +  +
Sbjct: 30  VLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFV 89

Query: 82  SIS---------SASHQYIDKHNI----HKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
             +         S S     K+N+    H      I +A++   V      +D   +PE 
Sbjct: 90  GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQ-GVNVTQVFVDTVGMPET 148

Query: 129 LPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177
                 Q+F  I      K D++   ++AASI AKV RD+ ++     +K  D   D   
Sbjct: 149 YQAQLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGS 208

Query: 178 GYPT-AKHQQVIKE 190
           GYP   K +  +KE
Sbjct: 209 GYPNDPKTKAWLKE 222


>gi|315364763|pdb|3PUF|A Chain A, Crystal Structure Of Human Rnase H2 Complex
 gi|315364766|pdb|3PUF|D Chain D, Crystal Structure Of Human Rnase H2 Complex
 gi|315364769|pdb|3PUF|G Chain G, Crystal Structure Of Human Rnase H2 Complex
 gi|315364772|pdb|3PUF|J Chain J, Crystal Structure Of Human Rnase H2 Complex
 gi|315364775|pdb|3PUF|M Chain M, Crystal Structure Of Human Rnase H2 Complex
 gi|315364778|pdb|3PUF|P Chain P, Crystal Structure Of Human Rnase H2 Complex
          Length = 302

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 82/194 (42%), Gaps = 30/194 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           V G+DE GRG + GP+V A        +       + DSK +   +RE L+ K+  +  +
Sbjct: 33  VLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFV 92

Query: 82  SIS---------SASHQYIDKHNI----HKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
             +         S S     K+N+    H      I +A++   V      +D   +PE 
Sbjct: 93  GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQ-GVNVTQVFVDTVGMPET 151

Query: 129 LPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177
                 Q+F  I      K D++   ++AASI AKV RD+ ++     +K  D   D   
Sbjct: 152 YQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGS 211

Query: 178 GYPT-AKHQQVIKE 190
           GYP   K +  +KE
Sbjct: 212 GYPNDPKTKAWLKE 225


>gi|269202752|ref|YP_003282021.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ED98]
 gi|262075042|gb|ACY11015.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ED98]
          Length = 312

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G DE G G   GP+ V A  +   ++P     G++DSKK++  K  EL E++ +    S+
Sbjct: 99  GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVAFIPHSL 158

Query: 84  SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127
            +  +   DK+NI +A       + A+ H  A++N L+ I  S L    ID  +  E   
Sbjct: 159 LTLHN---DKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 215

Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154
                   LP +     KG+S SL+IA ASII++
Sbjct: 216 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 249


>gi|116284049|gb|AAH29252.1| Rnaseh2a protein [Mus musculus]
          Length = 254

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 28/183 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK------- 74
           V G+DE GRG + GP+V A      + +       + DSK ++  +RE L+ K       
Sbjct: 30  VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDF 89

Query: 75  ------ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
                 + S  +IS S       + +++   T   +     +  V      +D   +PE 
Sbjct: 90  VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPET 149

Query: 129 LPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177
                 Q F  I      K DS+   ++AASI AKV RD+ ++     +   D   D   
Sbjct: 150 YQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGS 209

Query: 178 GYP 180
           GYP
Sbjct: 210 GYP 212


>gi|15924130|ref|NP_371664.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926724|ref|NP_374257.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus N315]
 gi|148267632|ref|YP_001246575.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus JH9]
 gi|150393687|ref|YP_001316362.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus JH1]
 gi|156979462|ref|YP_001441721.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus Mu3]
 gi|253317077|ref|ZP_04840290.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255005926|ref|ZP_05144527.2| ribonuclease HIII [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257795130|ref|ZP_05644109.1| ribonuclease HIII [Staphylococcus aureus A9781]
 gi|258407162|ref|ZP_05680311.1| ribonuclease HIII [Staphylococcus aureus A9763]
 gi|258421747|ref|ZP_05684668.1| ribonuclease HIII [Staphylococcus aureus A9719]
 gi|258432909|ref|ZP_05688598.1| ribonuclease HIII [Staphylococcus aureus A9299]
 gi|258443399|ref|ZP_05691742.1| ribonuclease HIII [Staphylococcus aureus A8115]
 gi|258446072|ref|ZP_05694234.1| ribonuclease HIII [Staphylococcus aureus A6300]
 gi|258449815|ref|ZP_05697913.1| ribonuclease HIII [Staphylococcus aureus A6224]
 gi|258454914|ref|ZP_05702877.1| ribonuclease HIII [Staphylococcus aureus A5937]
 gi|282894167|ref|ZP_06302398.1| ribonuclease HIII [Staphylococcus aureus A8117]
 gi|282928662|ref|ZP_06336259.1| ribonuclease HIII [Staphylococcus aureus A10102]
 gi|295405944|ref|ZP_06815753.1| ribonuclease HIII [Staphylococcus aureus A8819]
 gi|296275627|ref|ZP_06858134.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MR1]
 gi|297246504|ref|ZP_06930342.1| ribonuclease HIII [Staphylococcus aureus A8796]
 gi|73917849|sp|Q99UW5|RNH3_STAAM RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|73917850|sp|Q7A647|RNH3_STAAN RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|166226672|sp|A7X163|RNH3_STAA1 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|189043676|sp|A6U0V7|RNH3_STAA2 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|189043677|sp|A5IS26|RNH3_STAA9 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|13700940|dbj|BAB42236.1| SA0987 [Staphylococcus aureus subsp. aureus N315]
 gi|14246910|dbj|BAB57302.1| putative ribonuclease HIII [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|147740701|gb|ABQ48999.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus JH9]
 gi|149946139|gb|ABR52075.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus JH1]
 gi|156721597|dbj|BAF78014.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|257789102|gb|EEV27442.1| ribonuclease HIII [Staphylococcus aureus A9781]
 gi|257841317|gb|EEV65762.1| ribonuclease HIII [Staphylococcus aureus A9763]
 gi|257842080|gb|EEV66508.1| ribonuclease HIII [Staphylococcus aureus A9719]
 gi|257849349|gb|EEV73326.1| ribonuclease HIII [Staphylococcus aureus A9299]
 gi|257851489|gb|EEV75428.1| ribonuclease HIII [Staphylococcus aureus A8115]
 gi|257855130|gb|EEV78071.1| ribonuclease HIII [Staphylococcus aureus A6300]
 gi|257856735|gb|EEV79638.1| ribonuclease HIII [Staphylococcus aureus A6224]
 gi|257862794|gb|EEV85559.1| ribonuclease HIII [Staphylococcus aureus A5937]
 gi|282589701|gb|EFB94787.1| ribonuclease HIII [Staphylococcus aureus A10102]
 gi|282763653|gb|EFC03782.1| ribonuclease HIII [Staphylococcus aureus A8117]
 gi|285816820|gb|ADC37307.1| Ribonuclease HIII [Staphylococcus aureus 04-02981]
 gi|294969379|gb|EFG45399.1| ribonuclease HIII [Staphylococcus aureus A8819]
 gi|297176610|gb|EFH35873.1| ribonuclease HIII [Staphylococcus aureus A8796]
 gi|312829533|emb|CBX34375.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128537|gb|EFT84542.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus CGS03]
          Length = 312

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G DE G G   GP+ V A  +   ++P     G++DSKK++  K  EL E++ +    S+
Sbjct: 99  GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVAFIPHSL 158

Query: 84  SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127
            +  +   DK+NI +A       + A+ H  A++N L+ I  S L    ID  +  E   
Sbjct: 159 LTLHN---DKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 215

Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154
                   LP +     KG+S SL+IA ASII++
Sbjct: 216 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 249


>gi|290558916|gb|EFD92304.1| ribonuclease HII [Candidatus Parvarchaeum acidophilus ARMAN-5]
 gi|326422570|gb|EGD71965.1| Ribonuclease HII [Candidatus Parvarchaeum acidophilus
           ARMAN-5_'5-way FS']
          Length = 218

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 33/191 (17%)

Query: 28  GIDEVGRGALAGPVVVAAIIL--DPNN--IPFGINDSKKISHKK----REELYEKITSSA 79
           GIDE GRG + GP+++A + +  D +N     G+ DSK +S K+      E+ +   +  
Sbjct: 5   GIDEAGRGPVIGPMIIAGVGINEDISNEFKSIGVKDSKLLSIKRIYLLEREIKKSTQNYK 64

Query: 80  IISISSAS--HQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLP---- 130
            I ISS    +++    N++   LD++     +L   +VI  S   + + I E L     
Sbjct: 65  TIKISSEEIDNRFEKGKNLNYLELDSMAVIANDLSGEKVIIDSPSSNTKKIKEYLQNLIK 124

Query: 131 -----CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----T 181
                 + +A    D   + ++AASI+AK  R+R +    K    +G+D   GYP    T
Sbjct: 125 RKIIIAENYA----DRNHVEVSAASILAKSEREREVDKIKKI---FGYDFGSGYPSDPKT 177

Query: 182 AKHQQVIKEKG 192
            +  ++IKE G
Sbjct: 178 VEFLKIIKENG 188


>gi|323449222|gb|EGB05112.1| hypothetical protein AURANDRAFT_12637 [Aureococcus anophagefferens]
          Length = 229

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 88/203 (43%), Gaps = 43/203 (21%)

Query: 28  GIDEVGRGALAGPVVVAAI---ILDPNNIPFG---INDSKKISHKKREELYEKITS---- 77
           GIDE GRG + G +        I D + I      I+DSK+++ +KR +L+++I +    
Sbjct: 12  GIDEAGRGPVLGAMTFGTCYWSIADDDAIEASQKEIDDSKQLTDEKRSKLFDRIAADERM 71

Query: 78  SAIISISSASHQYIDKHNIHKATLDAI-YHAVENL--QVIPRS-----ALIDGRSIPEDL 129
              + + SA+    +   +   +L+AI + A   L  +V+ R      A +D    P+  
Sbjct: 72  GWAVEVVSAARISAEMLQVKPTSLNAISFDATCRLIQRVLDRGADVVEAFVDTVGNPDSY 131

Query: 130 P---CQAF-------AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS---H 176
                +AF          K D++     AASI AKV RD  + IA   Y + G D     
Sbjct: 132 SERLTRAFDGKIKFTVAKKADALYKCTGAASICAKVCRD--LSIARWTYDEPGVDDLDFG 189

Query: 177 VGYPTAKHQQVIKEKGPSCIHRL 199
            GYP+           P+C+  L
Sbjct: 190 SGYPS----------DPACVAWL 202


>gi|148673841|gb|EDL05788.1| mCG129830, isoform CRA_a [Mus musculus]
          Length = 226

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 74/184 (40%), Gaps = 28/184 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK------- 74
           V G+DE GRG + GP+V A      + +       + DSK ++  +RE L+ K       
Sbjct: 30  VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDF 89

Query: 75  ------ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
                 + S  +IS S       + +++   T   +     +  V      +D   +PE 
Sbjct: 90  VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPET 149

Query: 129 LPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177
                 Q F  I      K DS+   ++AASI AKV RD+ ++     +   D   D   
Sbjct: 150 YQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGS 209

Query: 178 GYPT 181
           GYP 
Sbjct: 210 GYPN 213


>gi|269986419|gb|EEZ92706.1| ribonuclease HII [Candidatus Parvarchaeum acidiphilum ARMAN-4]
          Length = 218

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 40/190 (21%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA---- 79
           GIDE GRG + GP+ +A I +  +        G+ DSK +S K+   L  +I  S+    
Sbjct: 5   GIDEAGRGPVIGPMTIAGIGIGEDLAQKFKLIGVKDSKMLSIKRIYLLEREIIKSSNNFK 64

Query: 80  IISISSAS--HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137
           +I +S+    +++ +  N++   LD +     NL          G ++  D P +    I
Sbjct: 65  VIKLSAEEIDNRFENGKNLNYLELDNMAEIANNLA---------GETVVIDSPSRNTEKI 115

Query: 138 K-----------------GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           +                  D   + ++AASIIAK  R+R +    K   + G+D   GYP
Sbjct: 116 RLYLSKKIKDKKIIAENYADKNHIEVSAASIIAKANREREVEKIKK---ELGYDFGSGYP 172

Query: 181 TA-KHQQVIK 189
           +  K  Q IK
Sbjct: 173 SDPKTIQFIK 182


>gi|126466172|ref|YP_001041281.1| RNase HII [Staphylothermus marinus F1]
 gi|126014995|gb|ABN70373.1| RNase HII [Staphylothermus marinus F1]
          Length = 244

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 90/205 (43%), Gaps = 31/205 (15%)

Query: 28  GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82
           GIDE GRG L G +V+A ++++     N I  G+ DSK+++   R  + +KI   A  +S
Sbjct: 11  GIDEAGRGPLIGDLVIAVLMINRDKIKNLISIGVRDSKQLTRHTRLIMAKKILKLADNVS 70

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI----- 137
           I   S + ID +NI+K   + I  A+  L  I          I E    + + +      
Sbjct: 71  IIYISPEMIDSYNINKIIAEKIIIALRMLSQIINHYRTVSIYIDEIKGYKNYILTNLSKY 130

Query: 138 -----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK--- 183
                        D     ++AASI+AK  RD+ +    K Y ++G     GYP+ K   
Sbjct: 131 INNIEEYVMEPNADQKYPVVSAASILAKTIRDKNIDFLKKIYGNFG----SGYPSDKITI 186

Query: 184 ---HQQVIKEKGPSCIHRLTFRPLR 205
               +   +E  P  I R T+  LR
Sbjct: 187 KWLTKTYNEENEPPLIIRRTWSTLR 211


>gi|109123571|ref|XP_001109423.1| PREDICTED: ribonuclease H2 subunit A isoform 2 [Macaca mulatta]
          Length = 300

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 28/190 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK------- 74
           V G+DE GRG + GP+V A      +++       + DSK +   +RE L+ K       
Sbjct: 30  VLGVDEAGRGPVLGPMVYAICYCPLSHLADLEALKVADSKTLLESERERLFAKMEENRDF 89

Query: 75  ------ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
                 + S  +IS S       + +++   T   +     +  V      +D   +PE 
Sbjct: 90  VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPET 149

Query: 129 LPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177
                 Q+F  I      K D++   ++AASI AKV RD+ ++     +K  D   D   
Sbjct: 150 YQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWKFVEKLQDSDTDYGS 209

Query: 178 GYPTAKHQQV 187
           GYP     +V
Sbjct: 210 GYPNDPKTKV 219


>gi|307103270|gb|EFN51532.1| hypothetical protein CHLNCDRAFT_140248 [Chlorella variabilis]
          Length = 259

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 14/116 (12%)

Query: 56  GINDSKKISHKKREELYEKITSSA--------IISISSASHQYIDKHNIHKATLDAIYHA 107
           G  DSK ++ +KR+ L+  I +          ++S +  S + + +  +   +L+A+  A
Sbjct: 20  GFADSKTLTEEKRDHLFGVIQAEGGMLGYQADVLSAAFISGKMLGRERV---SLNAL--A 74

Query: 108 VENLQVIPRSALIDGRSIPEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMR 162
            E+   +  + L  G  + +  P   F V  K DS    ++AASI+AKVTRDR +R
Sbjct: 75  FESTCALIEAVLARGERLSQRFPGVQFVVEAKADSTYPIVSAASIVAKVTRDRTLR 130


>gi|82656278|emb|CAI80692.1| probable ribonuclease HIII [Staphylococcus aureus RF122]
          Length = 318

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G DE G G   GP+ V A  +   ++P     G++DSKK++  K  EL E++ +    S+
Sbjct: 105 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 164

Query: 84  SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127
            +  +   +K+NI +A       + A+ H  AV+N L+ I  S L    ID  +  E   
Sbjct: 165 LTLHN---EKYNIQQAKGWTQVKMKAVLHNEAVKNVLEKIDSSQLDYIVIDQFAKREVYS 221

Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154
                   LP +     KG+S SL+IA ASII++
Sbjct: 222 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 255


>gi|238883322|gb|EEQ46960.1| ribonuclease HI large subunit [Candida albicans WO-1]
          Length = 427

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 47/213 (22%)

Query: 11  HFELEAMVREKNMWP-VAGIDEVGRGALAGPVVVA-AIILDPNNI----PFGINDSKKIS 64
           H E+   V +    P V G+DE GRG + GP+V   A  L+  +      +G  DSK ++
Sbjct: 136 HSEIPQSVLQNKTEPIVLGVDEAGRGPVLGPMVYGIAYSLESFSSKLQKEYGFADSKVLT 195

Query: 65  HKKREELYEKI---------------TSSAIISISSASHQYID---KHNIHKATLDAIYH 106
             KREEL+++I               T+     ISS   Q ++    +N+++   D   +
Sbjct: 196 DVKREELFKQIEDPDHELHKHIGWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTIN 255

Query: 107 AVENLQVIPRSALIDG-----------------RSIPEDLPCQAFAVIKGDSISLSIAAA 149
            ++  QV+ +   I                   R  PE          K DSI   ++ A
Sbjct: 256 LIK--QVLAKGVKISKIFVDTVGPPVTYQAKLKRFFPE---IDVTVTKKADSIYPIVSTA 310

Query: 150 SIIAKVTRDRLMRIAHKKYPDY-GFDSHVGYPT 181
           S++AKVTRD  ++  ++  P   G     GYP+
Sbjct: 311 SVVAKVTRDTNIKFYNENLPLLQGQKLGSGYPS 343


>gi|209877739|ref|XP_002140311.1| ribonuclease HI large subunit [Cryptosporidium muris RN66]
 gi|209555917|gb|EEA05962.1| ribonuclease HI large subunit, putative [Cryptosporidium muris
           RN66]
          Length = 286

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 43/205 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA-- 79
           + GIDE GRG + GP+V A       N        I+DSKK++   RE++ + I ++   
Sbjct: 21  ILGIDEAGRGPVLGPMVFACFYYPTENEKLLKLMNIDDSKKLTENSREKINKDIRNNKNQ 80

Query: 80  ------IISISSASHQYIDKHNIHKATLDAIYH--AVENLQVIPRSAL------IDGRSI 125
                 I+     S Q + K    K  L+ I H  A+  ++ + +  +      ID    
Sbjct: 81  FGWGIYILLPQYLSCQMLKK---QKYNLNEISHTAAINLIKSVLQHGVNVTHIYIDTVGP 137

Query: 126 PED--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRI-----AHKKYPDY 171
           PE          P     V  K DS+   ++ ASI+AKV RD  +        H +Y   
Sbjct: 138 PESYKKKLKLLFPSINITVTPKADSLYPCVSGASILAKVERDHFLSNWWSFPGHDRYDHN 197

Query: 172 G-----FDSHVGYP-TAKHQQVIKE 190
           G     ++   GYP   K +Q +K+
Sbjct: 198 GNNLSIYEQGSGYPGDPKTKQFLKQ 222


>gi|295706825|ref|YP_003599900.1| ribonuclease HIII [Bacillus megaterium DSM 319]
 gi|294804484|gb|ADF41550.1| ribonuclease HIII [Bacillus megaterium DSM 319]
          Length = 304

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 25/167 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS--- 78
           V G DEVG G   GP+ V A  +    +P     G+ DSK+++  K  E+ +++ SS   
Sbjct: 89  VIGSDEVGTGDYFGPMTVVAAYVQKEQLPLLKELGVRDSKELTDAKIIEIAKQLVSSIPY 148

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVEN-LQVI----PRSALIDGR-------- 123
           +++ + +  +    +  + +  + A+ H  A+ N L+ +    P + LID          
Sbjct: 149 SLLVLHNEKYNAFQEKGMSQGKMKALLHNKALSNVLKKLDPEKPDAILIDQFVEKNTYYK 208

Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                 E +    F   KG+S+ LS+AAASIIA+    + M +  +K
Sbjct: 209 HVVKEKEIIKENVFFSTKGESVHLSVAAASIIARYAFLKQMDLLTEK 255


>gi|161777620|ref|YP_416488.2| ribonuclease HIII [Staphylococcus aureus RF122]
          Length = 312

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G DE G G   GP+ V A  +   ++P     G++DSKK++  K  EL E++ +    S+
Sbjct: 99  GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 158

Query: 84  SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127
            +  ++   K+NI +A       + A+ H  AV+N L+ I  S L    ID  +  E   
Sbjct: 159 LTLHNE---KYNIQQAKGWTQVKMKAVLHNEAVKNVLEKIDSSQLDYIVIDQFAKREVYS 215

Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154
                   LP +     KG+S SL+IA ASII++
Sbjct: 216 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 249


>gi|296241926|ref|YP_003649413.1| ribonuclease HII [Thermosphaera aggregans DSM 11486]
 gi|296094510|gb|ADG90461.1| ribonuclease HII [Thermosphaera aggregans DSM 11486]
          Length = 248

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 28/178 (15%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP-----FGINDSKKISHKKREELYEKITSSAI-I 81
           GIDE GRG L G +VVA ++++            I DSK ++ + R E +  + +S+I +
Sbjct: 7   GIDEAGRGPLVGDMVVAGVMVEEKVFEELLSRISIRDSKTMTPRGRFESFLALENSSISV 66

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-------ALIDGRSIPEDLP---- 130
            +   S + ID+ N++  T  +I   ++    +  S         ID     + +     
Sbjct: 67  YLDYLSPKEIDRENLNMLTAGSIVRIIQFFNTLLSSYDERLVEVYIDEVKGVKKVVEKEC 126

Query: 131 -------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                  C+     + DS    ++ ASIIAKV+RD  +      + D+G     GYP+
Sbjct: 127 SKLFGKRCKLVFESQADSKYPIVSLASIIAKVSRDLSISSNTSVHGDFG----SGYPS 180


>gi|189219365|ref|YP_001940006.1| ribonuclease HIII [Methylacidiphilum infernorum V4]
 gi|189186223|gb|ACD83408.1| Ribonuclease HIII [Methylacidiphilum infernorum V4]
          Length = 323

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 4/46 (8%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKR 68
           AGIDE G+G L GP+VVAA+ +D  +  F    GI DSK+I    R
Sbjct: 112 AGIDECGKGDLFGPLVVAAVFVDKQSARFLVDAGIKDSKRIKSDSR 157


>gi|68469222|ref|XP_721398.1| likely Ribonuclease HII [Candida albicans SC5314]
 gi|68470247|ref|XP_720885.1| likely Ribonuclease HII [Candida albicans SC5314]
 gi|77022682|ref|XP_888785.1| hypothetical protein CaO19_6562 [Candida albicans SC5314]
 gi|46442777|gb|EAL02064.1| likely Ribonuclease HII [Candida albicans SC5314]
 gi|46443315|gb|EAL02598.1| likely Ribonuclease HII [Candida albicans SC5314]
 gi|76573598|dbj|BAE44682.1| hypothetical protein [Candida albicans]
          Length = 431

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 90/208 (43%), Gaps = 46/208 (22%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVA-AIILDPNNI----PFGINDSKKISHKKRE 69
           +++++ K    V G+DE GRG + GP+V   A  L+  +      +G  DSK ++  KRE
Sbjct: 144 QSILQNKTEPIVLGVDEAGRGPVLGPMVYGIAYSLESFSSKLQKEYGFADSKVLTDVKRE 203

Query: 70  ELYEKI---------------TSSAIISISSASHQYID---KHNIHKATLDAIYHAVENL 111
           EL+++I               T+     ISS   Q ++    +N+++   D   + ++  
Sbjct: 204 ELFKQIEDPDHELHKHIGWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTINLIK-- 261

Query: 112 QVIPRSALIDG-----------------RSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
           QV+ +   I                   R  PE          K DSI   ++ AS++AK
Sbjct: 262 QVLAKGVKISKIFVDTVGPPVTYQAKLKRFFPE---IDVTVTKKADSIYPIVSTASVVAK 318

Query: 155 VTRDRLMRIAHKKYPDY-GFDSHVGYPT 181
           VTRD  ++  ++  P   G     GYP+
Sbjct: 319 VTRDTNIKFYNENLPLLQGQKLGSGYPS 346


>gi|256847956|ref|ZP_05553400.1| ribonuclease HIII [Lactobacillus coleohominis 101-4-CHN]
 gi|256715016|gb|EEU29993.1| ribonuclease HIII [Lactobacillus coleohominis 101-4-CHN]
          Length = 306

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 28/155 (18%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA-- 79
           V G DEVG G+  GP+  AA+ +D +++      G+ DSKK+S     ++ ++I +    
Sbjct: 94  VLGSDEVGTGSYFGPLTTAAVFVDQDHLASLRKLGVEDSKKLSDPTIIKIAKQIMAQCPY 153

Query: 80  -IISISSASH-QYIDKHNIHKATLDAIYHAVENLQVI-------PRSALIDG-------- 122
            ++++    + + I K+N  +A L AI H     +V+       P + LID         
Sbjct: 154 HVVNVKPQDYNRLIRKYN--QAQLKAICHNFVLGKVLNQIAPVQPAAILIDQFVQPSTYF 211

Query: 123 RSIPEDLPC---QAFAVIKGDSISLSIAAASIIAK 154
           R + +  P      F   KG+S  L++AAASI+A+
Sbjct: 212 RYVRDQSPIIDKHVFFKEKGESYHLAVAAASIVAR 246


>gi|256811096|ref|YP_003128465.1| ribonuclease HII [Methanocaldococcus fervens AG86]
 gi|256794296|gb|ACV24965.1| ribonuclease HII [Methanocaldococcus fervens AG86]
          Length = 230

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 36/188 (19%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKR---EELYEKI-TS 77
           + GIDE GRG + GP+V+    +    + +    G+ DSK+++  KR   ++L E    S
Sbjct: 3   IIGIDEAGRGPVLGPMVICGYAIKKDKEEDLKKLGVKDSKELTKNKRAYLKKLLENFGCS 62

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYHAVENL-----------QVIPRSALIDGRSIP 126
             +I  +   +  +D  N+++  ++A     +NL           ++   +   + +   
Sbjct: 63  EKLILEAEKINNLMDTINLNEIEINAFSEVAKNLIKKLNIKDEEVEIYLDACSTNTKKFE 122

Query: 127 EDLPCQAFAVI-------------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173
            D   +   VI             K DS    ++AASIIAK  RD ++    K Y D G 
Sbjct: 123 SDFKEKIRDVIEERNLKIKIIAEHKADSKYPVVSAASIIAKAERDEIIENYKKIYGDIG- 181

Query: 174 DSHVGYPT 181
               GYP+
Sbjct: 182 ---SGYPS 186


>gi|66801163|ref|XP_629507.1| ribonuclease H2 subunit A [Dictyostelium discoideum AX4]
 gi|74896782|sp|Q54D13|RNH2A_DICDI RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A
 gi|60462898|gb|EAL61095.1| ribonuclease H2 subunit A [Dictyostelium discoideum AX4]
          Length = 289

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 34/175 (19%)

Query: 26  VAGIDEVGRGALAGPVV----VAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAI 80
           V GIDE GRG + GP+V     A I           NDSKK++ ++R++L++K+  S+ I
Sbjct: 22  VMGIDEAGRGPVMGPMVYGCCYAPISKSTTLKSMKFNDSKKLTEQQRDQLFDKMGESNKI 81

Query: 81  ISISSA--SHQYIDKHNIHKA--TLDAIYHAVENLQVIPRSALIDGRSIPEDL-----PC 131
           ++  +   + + + +  ++K   +L+ I H  E+   + RS L  G ++ E       P 
Sbjct: 82  LAYETDVITAEILSEKMLYKKPISLNVISH--ESAIGLIRSVLKKGVNVQELYLDTVGPP 139

Query: 132 QAFAVI---------------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171
             + ++               K DS+   ++AASI AKV RD    I +K + DY
Sbjct: 140 DKYQLMLKKLFPEIGKIIVSKKADSLYPIVSAASIAAKVVRD--FEITNKNF-DY 191


>gi|253733626|ref|ZP_04867791.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728326|gb|EES97055.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TCH130]
          Length = 318

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G DE G G   GP+ V A  +   ++P     G++DSKK++  K  EL E++ +    S+
Sbjct: 105 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 164

Query: 84  SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127
            +  +   +K+NI +A       + A+ H  A++N L+ I  S L    ID  +  E   
Sbjct: 165 LTLHN---EKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYN 221

Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154
                   LP +     KG+S SL+IA ASII++
Sbjct: 222 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 255


>gi|297208222|ref|ZP_06924652.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300912299|ref|ZP_07129742.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TCH70]
 gi|296886961|gb|EFH25864.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300886545|gb|EFK81747.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TCH70]
          Length = 318

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G DE G G   GP+ V A  +   ++P     G++DSKK++  K  EL E++ +    S+
Sbjct: 105 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 164

Query: 84  SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127
            +  +   +K+NI +A       + A+ H  A++N L+ I  S L    ID  +  E   
Sbjct: 165 LTLHN---EKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYN 221

Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154
                   LP +     KG+S SL+IA ASII++
Sbjct: 222 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 255


>gi|298694427|gb|ADI97649.1| probable ribonuclease HIII [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 318

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G DE G G   GP+ V A  +   ++P     G++DSKK++  K  EL E++ +    S+
Sbjct: 105 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 164

Query: 84  SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127
            +  +   +K+NI +A       + A+ H  A++N L+ I  S L    ID  +  E   
Sbjct: 165 LTLHN---EKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 221

Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154
                   LP +     KG+S SL+IA ASII++
Sbjct: 222 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 255


>gi|323442368|gb|EGA99997.1| ribonuclease HIII [Staphylococcus aureus O46]
          Length = 318

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G DE G G   GP+ V A  +   ++P     G++DSKK++  K  EL E++ +    S+
Sbjct: 105 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 164

Query: 84  SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127
            +  +   +K+NI +A       + A+ H  A++N L+ I  S L    ID  +  E   
Sbjct: 165 LTLHN---EKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 221

Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154
                   LP +     KG+S SL+IA ASII++
Sbjct: 222 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 255


>gi|330791509|ref|XP_003283835.1| hypothetical protein DICPUDRAFT_26608 [Dictyostelium purpureum]
 gi|325086221|gb|EGC39614.1| hypothetical protein DICPUDRAFT_26608 [Dictyostelium purpureum]
          Length = 289

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 79/177 (44%), Gaps = 39/177 (22%)

Query: 26  VAGIDEVGRGALAGPVVVA---AIILDPNNIP-FGINDSKKISHKKREELYEKITSSA-- 79
           + GIDE GRG + GP+V     A I +   I     NDSKK++ ++R  L++K+  S   
Sbjct: 18  IMGIDEAGRGPVMGPLVYGCCFAPISETATISKMKFNDSKKLTEQQRNHLFQKMCDSNKI 77

Query: 80  ------IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE------ 127
                 +IS    S + + K  I   +L+ I H  E+   + RS L  G ++ E      
Sbjct: 78  LGFEVDVISPEILSEKMLLKKPI---SLNVISH--ESAMGLIRSVLSKGINVQELYLDTV 132

Query: 128 DLPCQAFAVI--------------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170
             P    A++              K DS+   ++AASI AKV RD    I  K + D
Sbjct: 133 GTPATYQAMLKNHFPEISKIVVSKKADSLYPIVSAASICAKVIRDH--EITSKNFDD 187


>gi|317137770|ref|XP_001727941.2| ribonuclease H2 subunit A [Aspergillus oryzae RIB40]
          Length = 351

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 73/177 (41%), Gaps = 37/177 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKREELYE----- 73
           V G+DE GRG + GP+V +A  L P+++        +  NDSK ++   R  L       
Sbjct: 68  VLGVDEAGRGPVLGPMVYSAFYL-PHDLHHSLLARDYNFNDSKVLTPGVRANLMRLLCTP 126

Query: 74  ------------KITSSAIIS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118
                       K+ S+  IS   +   +  Y        AT++ I   VE  +V  R  
Sbjct: 127 GTPLFESCGWATKLLSARDISSGMMRPGAGVYNLNAQAMDATVELIREIVEGRKVDIREV 186

Query: 119 LIDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK 166
            ID    P           P     V K  DS+   ++AAS+ AKVTRD  + + H+
Sbjct: 187 YIDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAKVTRDVALELCHE 243


>gi|323440689|gb|EGA98399.1| ribonuclease HIII [Staphylococcus aureus O11]
          Length = 318

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G DE G G   GP+ V A  +   ++P     G++DSKK++  K  EL E++ +    S+
Sbjct: 105 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 164

Query: 84  SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127
            +  +   +K+NI +A       + A+ H  A++N L+ I  S L    ID  +  E   
Sbjct: 165 LTLHN---EKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 221

Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154
                   LP +     KG+S SL+IA ASII++
Sbjct: 222 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 255


>gi|282916389|ref|ZP_06324151.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus D139]
 gi|283770200|ref|ZP_06343092.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus H19]
 gi|282319829|gb|EFB50177.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus D139]
 gi|283460347|gb|EFC07437.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus H19]
          Length = 318

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G DE G G   GP+ V A  +   ++P     G++DSKK++  K  EL E++ +    S+
Sbjct: 105 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 164

Query: 84  SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127
            +  ++   K+NI +A       + A+ H  A++N L+ I  S L    ID  +  E   
Sbjct: 165 LTLHNE---KYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 221

Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154
                   LP +     KG+S SL+IA ASII++
Sbjct: 222 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 255


>gi|239636364|ref|ZP_04677366.1| ribonuclease hiii [Staphylococcus warneri L37603]
 gi|239597719|gb|EEQ80214.1| ribonuclease hiii [Staphylococcus warneri L37603]
          Length = 309

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 24/157 (15%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
           N +   G DE G G   GP+ V A  +  +++      G++DSKK++  K  EL E++ +
Sbjct: 88  NQYNCIGSDEAGSGDYFGPLTVCAAYVTKDHVKILKELGVDDSKKLTDAKIVELAEQLVT 147

Query: 78  ---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-QVIPRSAL----IDG----- 122
               +++++ +  +    +    +  + A+ H  A+ N+ Q I   AL    ID      
Sbjct: 148 FIPHSLLTLDNVKYNERQRAGWSQVKMKAVLHNQAIANVVQKIDTHALDYIVIDQFAERG 207

Query: 123 ---RSIPEDLPC--QAFAVIKGDSISLSIAAASIIAK 154
              R    DLP   +     KG+S SL+IAAASII++
Sbjct: 208 VYQRYALSDLPFPNKTKFETKGESKSLAIAAASIISR 244


>gi|21282752|ref|NP_645840.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MW2]
 gi|73917853|sp|Q8NX59|RNH3_STAAW RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|21204190|dbj|BAB94888.1| MW1023 [Staphylococcus aureus subsp. aureus MW2]
          Length = 312

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G DE G G   GP+ V A  +   ++P     G++DSKK++  K  EL E++ +    S+
Sbjct: 99  GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 158

Query: 84  SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127
            +  ++   K+NI +A       + A+ H  A++N L+ I  S L    ID  +  E   
Sbjct: 159 LTLHNE---KYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYN 215

Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154
                   LP +     KG+S SL+IA ASII++
Sbjct: 216 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 249


>gi|253731751|ref|ZP_04865916.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724509|gb|EES93238.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 315

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G DE G G   GP+ V A  +   ++P     G++DSKK++  K  EL E++ +    S+
Sbjct: 105 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 164

Query: 84  SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127
            +  +   +K+NI +A       + A+ H  A++N L+ I  S L    ID  +  E   
Sbjct: 165 LTLHN---EKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 221

Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154
                   LP +     KG+S SL+IA ASII++
Sbjct: 222 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 255


>gi|261418289|ref|YP_003251971.1| ribonuclease HIII [Geobacillus sp. Y412MC61]
 gi|319767751|ref|YP_004133252.1| ribonuclease HIII [Geobacillus sp. Y412MC52]
 gi|261374746|gb|ACX77489.1| ribonuclease HIII [Geobacillus sp. Y412MC61]
 gi|317112617|gb|ADU95109.1| ribonuclease HIII [Geobacillus sp. Y412MC52]
          Length = 311

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 34/168 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS---AI 80
           G DEVG G   GP+VVAA  +D ++I      G+ DSK+++ +  + +   I  +   A+
Sbjct: 97  GSDEVGTGDYFGPIVVAAAYVDRSHIAKIAALGVKDSKQLNDEAIKRIAPAIMETAPYAV 156

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVI-------PRSALID------------ 121
             + +A +    +  + +  + A+ H     +++       P + +ID            
Sbjct: 157 TVLDNAEYNRWQRSGMPQTKMKALLHNRTLAKLVDAIAPIEPEAIIIDEFLKRDSYFRYL 216

Query: 122 ---GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK-VTRDRLMRIAH 165
               R I E + C    + K +S+ +S+AAASIIA+ V  D + R++H
Sbjct: 217 SDEDRIIRERVHC----LPKAESVHVSVAAASIIARYVFLDEMERLSH 260


>gi|194246531|ref|YP_002004170.1| Ribonuclease HIII [Candidatus Phytoplasma mali]
 gi|254808013|sp|B3R0F3|RNH3_PHYMT RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|193806888|emb|CAP18317.1| Ribonuclease HIII [Candidatus Phytoplasma mali]
          Length = 288

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 22/153 (14%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS- 78
           +   G DEVG G + G +VV +  +   NIPF     I DSKK++ +K  +L  KI +  
Sbjct: 76  YSAIGSDEVGTGDVFGSIVVCSSYVSAENIPFLENLNIKDSKKLTDEKIIQLVPKIINKI 135

Query: 79  --AIISISSASHQYIDKHNIHKATLDAIYH---AVENLQVIPR--SALIDGRSIPED--- 128
             ++ISI+   +  +     +   + AI H    ++NL  I +  + ++D  +  ++   
Sbjct: 136 TYSLISINPYKYNILTNKGFNLNKIKAILHNDMILKNLIKIKKNVNVILDKFTSSKNYFN 195

Query: 129 -------LPCQAFAVIKGDSISLSIAAASIIAK 154
                  +  + F   K + + +S+AAASIIA+
Sbjct: 196 YLKNEKKVYKKIFFCNKAEKVHISVAAASIIAR 228


>gi|156542709|ref|XP_001603515.1| PREDICTED: similar to ENSANGP00000022231 [Nasonia vitripennis]
          Length = 350

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 28/180 (15%)

Query: 28  GIDEVGRGALAGPVV--VAAIILDPNN--IPFGINDSKKISHKKREELYEKITSSAI--- 80
           G+DE GRG + GP+V  +A   L      +  G  DSK ++ +KR+ +++KI  +     
Sbjct: 82  GVDEAGRGPVLGPMVYGIAYAPLSQKKLLVDMGCADSKSLTEEKRDTIFDKICDNGDKMG 141

Query: 81  ISISSASHQYI-------DKHNIHKATLDA----IYHAVENLQVIPRSALIDGRSIPEDL 129
            ++ + S  YI        K ++++ ++++    I  A+++  V      +D    PE  
Sbjct: 142 YAVDAISPNYIANCMYRRTKTSLNEVSMNSAISLIKQAIDS-GVFVAEIYVDTVGKPEKY 200

Query: 130 PCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
             +   +          K DS    ++AASI AKV+RD  +R    +  +   +   GYP
Sbjct: 201 QAKLEGIFPGIKIVVAKKADSTYPIVSAASICAKVSRDHALRAWQFRETENESEYGSGYP 260


>gi|316974057|gb|EFV57595.1| ribonuclease H2 subunit A [Trichinella spiralis]
          Length = 418

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 28/159 (17%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA---- 79
           G+DE GRG + GP+V A  +   +N+         DSK ++  +R  +++ + S      
Sbjct: 183 GVDEAGRGPVLGPMVYACGVCVTDNLEQLSTLKAKDSKTLTEDERSTIFKNMQSEKNSHL 242

Query: 80  -IISISSASHQYIDKHNI--HKATLDAIYH--AVENLQVIPRSALIDGRSIPEDL-PCQA 133
              ++   S  YI K  +   K  L+ I H  A+E +Q++  + ++  + I + + P + 
Sbjct: 243 FAYTMKLLSPVYISKSMLGRSKYNLNEISHDTAMELIQIVCDAGVVVDKVILDTVGPTEK 302

Query: 134 FAVI--------------KGDSISLSIAAASIIAKVTRD 158
           +                 K DS+   ++AASI AKVTRD
Sbjct: 303 YEAKLRSRFPKIDILVSKKADSLHTIVSAASICAKVTRD 341


>gi|268612465|pdb|3KIO|A Chain A, Mouse Rnase H2 Complex
          Length = 301

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 72/184 (39%), Gaps = 28/184 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK------- 74
           V G+DE GRG + GP V A      + +       + DSK ++  +RE L+ K       
Sbjct: 30  VLGVDEAGRGPVLGPXVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKXEEDGDF 89

Query: 75  ------ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
                 + S  +IS S       + +++   T   +     +  V      +D    PE 
Sbjct: 90  VGWALDVLSPNLISTSXLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGXPET 149

Query: 129 LPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177
                 Q F  I      K DS+   ++AASI AKV RD+ ++     +   D   D   
Sbjct: 150 YQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGS 209

Query: 178 GYPT 181
           GYP 
Sbjct: 210 GYPN 213


>gi|283470350|emb|CAQ49561.1| ribonuclease hiii [Staphylococcus aureus subsp. aureus ST398]
          Length = 318

 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G DE G G   GP+ V A  +   ++P     G++DSKK++  K  EL E++ +    S+
Sbjct: 105 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 164

Query: 84  SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127
            +  ++   K+NI +A       + A+ H  A++N L+ I  S L    ID  +  E   
Sbjct: 165 LTLHNE---KYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 221

Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154
                   LP +     KG+S SL+IA ASII++
Sbjct: 222 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 255


>gi|83770969|dbj|BAE61102.1| unnamed protein product [Aspergillus oryzae]
          Length = 363

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 73/177 (41%), Gaps = 37/177 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKREELYE----- 73
           V G+DE GRG + GP+V +A  L P+++        +  NDSK ++   R  L       
Sbjct: 80  VLGVDEAGRGPVLGPMVYSAFYL-PHDLHHSLLARDYNFNDSKVLTPGVRANLMRLLCTP 138

Query: 74  ------------KITSSAIIS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118
                       K+ S+  IS   +   +  Y        AT++ I   VE  +V  R  
Sbjct: 139 GTPLFESCGWATKLLSARDISSGMMRPGAGVYNLNAQAMDATVELIREIVEGRKVDIREV 198

Query: 119 LIDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK 166
            ID    P           P     V K  DS+   ++AAS+ AKVTRD  + + H+
Sbjct: 199 YIDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAKVTRDVALELCHE 255


>gi|184155001|ref|YP_001843341.1| ribonuclease HIII [Lactobacillus fermentum IFO 3956]
 gi|238692957|sp|B2GB29|RNH3_LACF3 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|183226345|dbj|BAG26861.1| ribonuclease HIII [Lactobacillus fermentum IFO 3956]
          Length = 301

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 16/112 (14%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
           W V G DEVG G+  GP+  AA+ +  + +      G+ DSKK++  +   L ++I ++ 
Sbjct: 88  WSVLGSDEVGVGSYFGPLTTAAVFVAADQVASLTQLGVADSKKLTDPEIIRLAKQIMATC 147

Query: 80  IIS----ISSASHQYIDKHNIHKATLDAIYH------AVENLQVIPRSALID 121
            ++    + +A +  + K+N  +A L A+ H       +E L   P++ LID
Sbjct: 148 PVTYLNLMPAAYNARMKKYN--QAQLKALCHNYVLAKTLERLATKPQAILID 197


>gi|299783000|gb|ADJ40998.1| Ribonuclease HIII (RNase HIII) [Lactobacillus fermentum CECT 5716]
          Length = 301

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 16/112 (14%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
           W V G DEVG G+  GP+  AA+ +  + +      G+ DSKK++  +   L ++I ++ 
Sbjct: 88  WSVLGSDEVGVGSYFGPLTTAAVFVAADQVASLTQLGVADSKKLTDPEIIRLAKQIMATC 147

Query: 80  IIS----ISSASHQYIDKHNIHKATLDAIYH------AVENLQVIPRSALID 121
            ++    + +A +  + K+N  +A L A+ H       +E L   P++ LID
Sbjct: 148 PVTYLNLMPAAYNARMKKYN--QAQLKALCHNYVLAKTLERLATKPQAILID 197


>gi|227514539|ref|ZP_03944588.1| ribonuclease H [Lactobacillus fermentum ATCC 14931]
 gi|260663396|ref|ZP_05864287.1| ribonuclease HIII [Lactobacillus fermentum 28-3-CHN]
 gi|227087096|gb|EEI22408.1| ribonuclease H [Lactobacillus fermentum ATCC 14931]
 gi|260552248|gb|EEX25300.1| ribonuclease HIII [Lactobacillus fermentum 28-3-CHN]
          Length = 301

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 16/112 (14%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
           W V G DEVG G+  GP+  AA+ +  + +      G+ DSKK++  +   L ++I ++ 
Sbjct: 88  WSVLGSDEVGVGSYFGPLTTAAVFVAADQVASLTQLGVADSKKLTDPEIIRLAKQIMATC 147

Query: 80  IIS----ISSASHQYIDKHNIHKATLDAIYH------AVENLQVIPRSALID 121
            ++    + +A +  + K+N  +A L A+ H       +E L   P++ LID
Sbjct: 148 PVTYLNLMPAAYNARMKKYN--QAQLKALCHNYVLAKTLERLATKPQAILID 197


>gi|293401505|ref|ZP_06645648.1| ribonuclease HIII [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305143|gb|EFE46389.1| ribonuclease HIII [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 300

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 41/175 (23%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKK 62
           P+ PH E          +P  G DEVG G   GP+ V    +   ++PF    GI DSK 
Sbjct: 79  PQNPHTE---------WYPQCGSDEVGTGDYFGPITVCTTYVKKEDVPFLRELGIQDSKA 129

Query: 63  ISHKKREE----LYEKITSSAIISISSASHQYID--------KHNIHKATLDAIYHAVEN 110
           ++ ++  E    L E++T S ++ + +A +  I         K  +H     A  H    
Sbjct: 130 VTDERIRELGPILCERLTYSLLV-LDNAKYNAIHPQYNMVAIKSRLHN---QAYVHLRRK 185

Query: 111 LQVIPRSALIDG-----------RSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
           L  +P   +ID              + E +    F   K ++  LS+AA SIIA+
Sbjct: 186 LGSLPSLCIIDQFVQAKSYYRYLHDVEEVVHTIHFET-KAENKYLSVAAGSIIAR 239


>gi|302332748|gb|ADL22941.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 312

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G DE G G   GP+ V A  +   ++P     G++DSKK++  K  EL E++ +    S+
Sbjct: 99  GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 158

Query: 84  SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127
            +  ++   K+NI +A       + A+ H  A++N L+ I  S L    ID  +  E   
Sbjct: 159 LTLHNE---KYNIQQAKGWTQVKMKAVLHNEAIKNVLKKIDSSQLDYIVIDQFAKREVYS 215

Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154
                   LP +     KG+S SL+IA ASII++
Sbjct: 216 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 249


>gi|325974872|gb|ADZ47886.1| ribonuclease H2 subunit A [Capra hircus]
          Length = 286

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 28/183 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK------- 74
           V G+DE GRG + GP+V A      + +       + DSK +S  +R+ L+ K       
Sbjct: 30  VLGVDEAGRGPVLGPMVYAICYCPLSRLEDLEALKVADSKTLSESERDRLFAKMEEDGDF 89

Query: 75  ------ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
                 + S  +IS S       + + +   T   +     +  V      +D   +PE 
Sbjct: 90  VGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNVAQVFVDTGGLPET 149

Query: 129 LP---CQAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177
                 Q F  I      K D++   ++AASI AKV RD+ ++     +K  D   D   
Sbjct: 150 YQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWKFVEKLQDLDTDYGS 209

Query: 178 GYP 180
           GYP
Sbjct: 210 GYP 212


>gi|195867864|ref|ZP_03079863.1| ribonuclease HII [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|195660441|gb|EDX53699.1| ribonuclease HII [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
          Length = 317

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKI 75
           +N   + G DEVG G L G +VV A+ L  +++ F     I DSKK+S  + +E+YEKI
Sbjct: 99  QNNQIIIGSDEVGVGDLFGGIVVCAVSLKQSDLKFLAHLNIVDSKKLSDHQMQEIYEKI 157


>gi|307188511|gb|EFN73248.1| Ribonuclease H2 subunit A [Camponotus floridanus]
          Length = 334

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 74/182 (40%), Gaps = 29/182 (15%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELYEKIT------ 76
           G+DE GRG + GP+V   I   P +     +  G  DSK ++ KKR+E+++ I       
Sbjct: 65  GVDEAGRGPVLGPMVYG-ISYAPLSRKQLLVDLGCADSKSLTEKKRDEIFDDICKHKDSI 123

Query: 77  -------SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
                  S  +I+ S      +  + +   +   +        V      +D    PE  
Sbjct: 124 GWAIEAISPNVIANSMYRRTKVSLNEVSMVSAIKLIQGAIEAGVNVAEIYVDTVGKPESY 183

Query: 130 PCQAFAVIKGDSISLS---------IAAASIIAKVTRDRLMRIAHKKYPD-YGFDSHVGY 179
             +   V  G  I ++         ++AASI AKV+RD  +R    +  D  G +   GY
Sbjct: 184 QARLKGVFPGVKIVVAKKADATYPIVSAASICAKVSRDHALRAWRFREGDSIGTEYGSGY 243

Query: 180 PT 181
           PT
Sbjct: 244 PT 245


>gi|303388657|ref|XP_003072562.1| ribonuclease HII [Encephalitozoon intestinalis ATCC 50506]
 gi|303301703|gb|ADM11202.1| ribonuclease HII [Encephalitozoon intestinalis ATCC 50506]
          Length = 239

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 26/175 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSSAIISIS 84
           V GIDE GRG + G +V  A+I     +   G  DSK ++  +R + ++ I       + 
Sbjct: 19  VVGIDEAGRGPVIGYMVYGALISSRTTLENTGFRDSKVLTSGQRHDFFKMIKERGFGYVY 78

Query: 85  SASH-QYIDKHNIHKAT-------------LDAIYHAVENLQVIPRSALIDGRS----IP 126
             +H  YI +    K+T             L+ I    + +  +   AL D       + 
Sbjct: 79  HCTHPDYITEMMQVKSTSLNEISLISVLKILEEIKAKCKKVDTVYVDALGDCEKYKARLE 138

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           E  P +     K DS    ++ ASI+AKV RD L+         +G +   GYP+
Sbjct: 139 EAYPYKFVIEEKADSKFQIVSGASIVAKVQRDILI-------SQFGSNLGSGYPS 186


>gi|171920922|ref|ZP_02932071.1| ribonuclease HII [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|185178980|ref|ZP_02964735.1| ribonuclease HII [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188023994|ref|ZP_02996755.1| ribonuclease HII [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188518241|ref|ZP_03003771.1| ribonuclease HII [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188524398|ref|ZP_03004424.1| ribonuclease HII [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|198273849|ref|ZP_03206383.1| ribonuclease HII [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209554110|ref|YP_002284833.1| ribonuclease HIII [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225550434|ref|ZP_03771383.1| ribonuclease HII [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
 gi|225551445|ref|ZP_03772391.1| ribonuclease HII [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|171903150|gb|EDT49439.1| ribonuclease HII [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|184209262|gb|EDU06305.1| ribonuclease HII [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188019019|gb|EDU57059.1| ribonuclease HII [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188998110|gb|EDU67207.1| ribonuclease HII [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195659944|gb|EDX53324.1| ribonuclease HII [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|198249604|gb|EDY74386.1| ribonuclease HII [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209541611|gb|ACI59840.1| ribonuclease HIII [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225379260|gb|EEH01625.1| ribonuclease HII [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|225379588|gb|EEH01950.1| ribonuclease HII [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
          Length = 317

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKI 75
           +N   + G DEVG G L G +VV A+ L  +++ F     I DSKK+S  + +E+YEKI
Sbjct: 99  QNNQIIIGSDEVGVGDLFGGIVVCAVSLKQSDLKFLAHLNIVDSKKLSDHQMQEIYEKI 157


>gi|49483303|ref|YP_040527.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425191|ref|ZP_05601617.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427854|ref|ZP_05604252.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430489|ref|ZP_05606871.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433251|ref|ZP_05609609.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus E1410]
 gi|257436090|ref|ZP_05612137.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M876]
 gi|282903688|ref|ZP_06311576.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C160]
 gi|282905457|ref|ZP_06313312.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282913915|ref|ZP_06321702.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M899]
 gi|282918838|ref|ZP_06326573.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C427]
 gi|282923960|ref|ZP_06331636.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C101]
 gi|283957883|ref|ZP_06375334.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293500950|ref|ZP_06666801.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 58-424]
 gi|293509907|ref|ZP_06668616.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M809]
 gi|293526494|ref|ZP_06671179.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M1015]
 gi|73917851|sp|Q6GHU5|RNH3_STAAR RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|49241432|emb|CAG40116.1| putative ribonuclease [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257272167|gb|EEV04299.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274695|gb|EEV06182.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278617|gb|EEV09236.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281344|gb|EEV11481.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus E1410]
 gi|257284372|gb|EEV14492.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M876]
 gi|282313932|gb|EFB44324.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C101]
 gi|282316648|gb|EFB47022.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C427]
 gi|282321983|gb|EFB52307.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M899]
 gi|282330749|gb|EFB60263.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595306|gb|EFC00270.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C160]
 gi|283790032|gb|EFC28849.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290920566|gb|EFD97629.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M1015]
 gi|291095955|gb|EFE26216.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 58-424]
 gi|291467357|gb|EFF09874.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M809]
 gi|315193810|gb|EFU24205.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus CGS00]
          Length = 312

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G DE G G   GP+ V A  +   ++P     G++DSKK++  K  EL E++ +    S+
Sbjct: 99  GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 158

Query: 84  SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127
            +  ++   K+NI +A       + A+ H  A++N L+ I  S L    ID  +  E   
Sbjct: 159 LTLHNE---KYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 215

Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154
                   LP +     KG+S SL+IA ASII++
Sbjct: 216 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 249


>gi|242010277|ref|XP_002425895.1| ribonuclease hi large subunit, putative [Pediculus humanus
           corporis]
 gi|212509871|gb|EEB13157.1| ribonuclease hi large subunit, putative [Pediculus humanus
           corporis]
          Length = 271

 Score = 45.1 bits (105), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 43/210 (20%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWP-VAGIDEVGRGALAGPVVVAAIILDPNNI----PF 55
           +F ++IPE+   E           P + G+DE GRG + GP+V +      N+       
Sbjct: 33  LFNSNIPEKCFLE-----------PCILGVDEAGRGPVLGPMVYSVFFCSINDADILKDI 81

Query: 56  GINDSKKISHKKREELYEKITSSA--------IISISSASHQYID--KHNIHKATLDAIY 105
           G  DSK ++ KKRE++++ I  +         ++S +  S++ +   K+++++   ++  
Sbjct: 82  GCTDSKVLTEKKREDIFDLINQNNDKLGWAVDLLSPNLISNRMLQRKKYSLNEIAQNSTI 141

Query: 106 HAVENL---QVIPRSALIDG--------RSIPEDLPCQAFAV-IKGDSISLSIAAASIIA 153
             +E+L    +  +   +D           + +  P     V  K D +   + AASI A
Sbjct: 142 KLIESLLEKNITLKDIFVDTIGPADKYQEKLSKLFPNSKVTVKSKADLLYPVVGAASICA 201

Query: 154 KVTRDRLMRIAHKKYPD-YGFDSH--VGYP 180
           KV RD    +   K+P+    D+    GYP
Sbjct: 202 KVIRD--TAVQQWKFPEKITIDAEFGTGYP 229


>gi|331244484|ref|XP_003334882.1| ribonuclease HI large subunit [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309313872|gb|EFP90463.1| ribonuclease HI large subunit [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 143

 Score = 45.1 bits (105), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 7/68 (10%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-----DPNNIPFGINDSKKISHKK 67
           E E  ++  N W + GIDE GRG + GP+V  A        +   +  G  DSK ++H++
Sbjct: 41  EEEEQLKRDN-W-IMGIDEAGRGPVLGPMVYGAAFCTQAFAEDKLLDLGFADSKTLTHRR 98

Query: 68  REELYEKI 75
           REEL E I
Sbjct: 99  REELLEMI 106


>gi|15790853|ref|NP_280677.1| ribonuclease HII [Halobacterium sp. NRC-1]
 gi|169236599|ref|YP_001689799.1| ribonuclease HII [Halobacterium salinarum R1]
 gi|74568991|sp|Q9HNR3|RNH2_HALSA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|189043604|sp|B0R6T4|RNH2_HALS3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|10581416|gb|AAG20157.1| RNAase H [Halobacterium sp. NRC-1]
 gi|167727665|emb|CAP14453.1| ribonuclease HII [Halobacterium salinarum R1]
          Length = 212

 Score = 45.1 bits (105), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 72/144 (50%), Gaps = 13/144 (9%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87
           G+DE G+G + G +  AA+  DP  +P G+ DSK++S  +R EL +++ +S  + ++   
Sbjct: 5   GVDEAGKGPVLGSMFAAAVAGDPAAVPDGVADSKRLSADRRAELDDRVRASMRVGVAEVP 64

Query: 88  HQYID--KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
              ID  + +++  T+ A   A+  +     +  +D   + E    +  A      ++++
Sbjct: 65  VDRIDDPETDMNTLTVAAQADALGRVVADGMAGYVDAGDVNEQRFGRRVANRVAADVAVT 124

Query: 146 -----------IAAASIIAKVTRD 158
                      +AAASI+AKV RD
Sbjct: 125 AEHGADDEYDLVAAASIVAKVARD 148


>gi|84370099|ref|NP_001033623.1| ribonuclease H2 subunit A [Bos taurus]
 gi|110816412|sp|Q2TBT5|RNH2A_BOVIN RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
           AltName: Full=Ribonuclease HI large subunit; Short=RNase
           HI large subunit; AltName: Full=Ribonuclease HI subunit
           A
 gi|83638655|gb|AAI09683.1| Ribonuclease H2, subunit A [Bos taurus]
 gi|296485915|gb|DAA28030.1| ribonuclease H2 subunit A [Bos taurus]
          Length = 299

 Score = 45.1 bits (105), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 28/183 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK------- 74
           V G+DE GRG + GP+V A      + +       + DSK +S  +R+ L+ K       
Sbjct: 30  VLGVDEAGRGPVLGPMVYAICYCPLSRLEDLEALKVADSKTLSESERDRLFAKMEEDGDF 89

Query: 75  ------ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
                 + S  +IS S       + + +   T   +     +  V      +D   +PE 
Sbjct: 90  VGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNVAQVFVDTVGLPET 149

Query: 129 LP---CQAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177
                 Q F  I      K D++   ++AASI AKV RD+ ++     +K  D   D   
Sbjct: 150 YQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWKFVEKLQDLDTDYGS 209

Query: 178 GYP 180
           GYP
Sbjct: 210 GYP 212


>gi|282910715|ref|ZP_06318518.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus WBG10049]
 gi|295427627|ref|ZP_06820259.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297591419|ref|ZP_06950057.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MN8]
 gi|282325320|gb|EFB55629.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus WBG10049]
 gi|295127985|gb|EFG57619.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297576305|gb|EFH95021.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MN8]
 gi|312438484|gb|ADQ77555.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TCH60]
          Length = 329

 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G DE G G   GP+ V A  +   ++P     G++DSKK++  K  EL E++ +    S+
Sbjct: 116 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 175

Query: 84  SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127
            +  ++   K+NI +A       + A+ H  A++N L+ I  S L    ID  +  E   
Sbjct: 176 LTLHNE---KYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 232

Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154
                   LP +     KG+S SL+IA ASII++
Sbjct: 233 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 266


>gi|309778053|ref|ZP_07672993.1| ribonuclease HIII [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914190|gb|EFP59990.1| ribonuclease HIII [Erysipelotrichaceae bacterium 3_1_53]
          Length = 299

 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 32/161 (19%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKIS----HKKREELY 72
           K ++P AG DEVG G   GPV V A  +   ++ F    GI DSK I      +   +L 
Sbjct: 86  KEIYPQAGSDEVGTGDYFGPVTVCATYVTAQDVEFLREQGIQDSKAIDDTAIRRMAPKLI 145

Query: 73  EKITSSAIISISSASHQYIDKHNIHKATL-----DAIYHAVENLQVIPRSALIDG----- 122
           E++  S +I + +A++  I   N   A        A  H  + L  +P   +ID      
Sbjct: 146 ERLPHSLLI-LDNATYNRIHGENNMVAIKSRMHNQAYVHLRKKLGALPEFCIIDQFVQKS 204

Query: 123 ---------RSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                    R +  D+  +     K ++  LS+AA SIIA+
Sbjct: 205 SYYRYLQKERDVVYDIHFET----KAENKYLSVAAGSIIAR 241


>gi|294155370|ref|YP_003559754.1| ribonuclease HII [Mycoplasma crocodyli MP145]
 gi|291599873|gb|ADE19369.1| ribonuclease HII [Mycoplasma crocodyli MP145]
          Length = 246

 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 39/189 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKR-EELYEKITSSA- 79
           + G+DE G G   GP++ AA+++    I +    G+ DSKKI+   R  +L  +I S   
Sbjct: 30  IIGVDETGVGDYFGPLISAAVLVSDKQIEYLKSIGVKDSKKITSDSRIIDLANQIKSKCL 89

Query: 80  --IISISSASHQYIDK--HNIHKATLDAIYHAVENLQVI--PRSALIDGRSIPEDLPCQA 133
             + ++S+A +  +++   N +K       H + +L+ +   R +  D   I +     A
Sbjct: 90  YKVYTLSNAGYNRVEQTYRNSNKLKFFTHAHVINSLEELLESRGSEYDYVFIDQYTTKNA 149

Query: 134 FAVI------------------------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
           F                           K +SI +S+AAASI+A   R  L+    K   
Sbjct: 150 FIEYFNNMIYINNWSSIKVFKKPILLSHKAESIHISVAAASILA---RAELLENMKKMKA 206

Query: 170 DYGFDSHVG 178
            Y FD  +G
Sbjct: 207 KYNFDFKLG 215


>gi|13357958|ref|NP_078232.1| ribonuclease HII [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170761950|ref|YP_001752480.1| ribonuclease HIII [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|183508540|ref|ZP_02958062.1| ribonuclease HIII [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|11387109|sp|Q9PQ93|RNH3_UREPA RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|189043679|sp|B1AJ36|RNH3_UREP2 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|11357021|pir||C82896 ribonuclease HII UU397 [imported] - Ureaplasma urealyticum
 gi|6899383|gb|AAF30807.1|AE002137_6 ribonuclease HII [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827527|gb|ACA32789.1| ribonuclease HIII [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|182675978|gb|EDT87883.1| ribonuclease HIII [Ureaplasma parvum serovar 14 str. ATCC 33697]
          Length = 316

 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 34/172 (19%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81
           + G DEVG G L G +VV A+ L  ++        I DSKK++ ++ +E+Y++I +    
Sbjct: 103 IIGSDEVGVGDLFGGIVVCAVSLKKSDFKKINHLKIIDSKKLNDQQMQEIYQQIKNQISY 162

Query: 82  SISSAS----HQYIDKHN-----------------IHKATLDAIYHAVENLQVIPRSALI 120
           +I S +    ++ I ++N                 IHK    +I+  V+       S+L 
Sbjct: 163 TIVSYNPKEYNELIKEYNNAHILKTILHYKALQSEIHKHAKYSIFSVVD-----AFSSLK 217

Query: 121 DGRSIPEDLPCQAFA----VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
           +     + +  Q +     + K +SI  S+A ASIIA+V   +++ I  +++
Sbjct: 218 NWNQYLQKVNFQPYEPNLLIPKAESIYTSVALASIIARVMFLKMIAIIEEQF 269


>gi|171920172|ref|ZP_02931561.1| ribonuclease HIII [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|186701730|ref|ZP_02971421.1| ribonuclease HIII [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|171902547|gb|EDT48836.1| ribonuclease HIII [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|186700997|gb|EDU19279.1| ribonuclease HIII [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 316

 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 34/172 (19%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81
           + G DEVG G L G +VV A+ L  ++        I DSKK++ ++ +E+Y++I +    
Sbjct: 103 IIGSDEVGVGDLFGGIVVCAVSLKKSDFKKINHLKIIDSKKLNDQQMQEIYQQIKNQISY 162

Query: 82  SISSAS----HQYIDKHN-----------------IHKATLDAIYHAVENLQVIPRSALI 120
           +I S +    ++ I ++N                 IHK    +I+  V+       S+L 
Sbjct: 163 TIVSYNPKEYNELIKEYNNAHILKTILHYKALQSEIHKHAKYSIFSVVD-----AFSSLK 217

Query: 121 DGRSIPEDLPCQAFA----VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
           +     + +  Q +     + K +SI  S+A ASIIA+V   +++ I  +++
Sbjct: 218 NWNQYLQKVNFQPYEPNLLIPKAESIYTSVALASIIARVMFLKMIAIIEEQF 269


>gi|119496273|ref|XP_001264910.1| ribonuclease HI large subunit [Neosartorya fischeri NRRL 181]
 gi|119413072|gb|EAW23013.1| ribonuclease HI large subunit [Neosartorya fischeri NRRL 181]
          Length = 363

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 73/177 (41%), Gaps = 37/177 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKREELYE----- 73
           V G+DE GRG + GP+V +A  + P+ +        +  NDSK ++   R  L       
Sbjct: 78  VLGVDEAGRGPVLGPMVYSAFYI-PHTLHHSLLARDYSFNDSKVLTPGVRANLMRLLCTA 136

Query: 74  ------------KITSSAIIS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118
                       K+ S+  IS   +  AS  Y        AT++ I   VE  +V  R  
Sbjct: 137 GNPLHASCGWATKVLSARDISAGMMRPASGAYNLNAQAMDATVEIIRGIVEERRVDIREV 196

Query: 119 LIDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK 166
            ID    P           P     V K  D++   ++AAS++AKVTRD  +   H+
Sbjct: 197 YIDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAKVTRDVALEFCHE 253


>gi|67537888|ref|XP_662718.1| hypothetical protein AN5114.2 [Aspergillus nidulans FGSC A4]
 gi|40743105|gb|EAA62295.1| hypothetical protein AN5114.2 [Aspergillus nidulans FGSC A4]
 gi|259484559|tpe|CBF80886.1| TPA: ribonuclease HI large subunit (AFU_orthologue; AFUA_1G07600)
           [Aspergillus nidulans FGSC A4]
          Length = 339

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 37/177 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKREELYE----- 73
           + GIDE GRG + GP+V +A  L P+++        +  NDSK ++   R  L       
Sbjct: 64  ILGIDEAGRGPVLGPMVYSAFYL-PSSLHHSLLSEEYSFNDSKVLTAGVRANLMRILCTQ 122

Query: 74  ------------KITSSAIIS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118
                       K+ S+  IS   +  A+  Y        AT++ I   VE  ++  R  
Sbjct: 123 GSPLHESCGWATKLLSARDISSGMMRPAAGVYNLNAQAMDATIELIRGVVEERKLNVREV 182

Query: 119 LIDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK 166
            ID    P           P     V K  DS+   ++AAS++AKVTRD  + + ++
Sbjct: 183 YIDTIGNPASYQKKLEMVFPSLRITVAKKADSLYPCVSAASVVAKVTRDVALDVCYE 239


>gi|284048370|ref|YP_003398709.1| ribonuclease HIII [Acidaminococcus fermentans DSM 20731]
 gi|283952591|gb|ADB47394.1| ribonuclease HIII [Acidaminococcus fermentans DSM 20731]
          Length = 317

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 92/206 (44%), Gaps = 35/206 (16%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS 77
            +W   G DE G+G   GP+ VAA+ LD         +GI DSK ++  K   L EKI  
Sbjct: 106 GLW--CGSDESGKGDYFGPLAVAAVCLDLAAARQYAAWGICDSKALTDGKIRLLAEKIRQ 163

Query: 78  SA------IISISSASHQYID----KHNIHKATLDAIYHAVEN-LQVIP--RSALID--- 121
           +A      ++     + +Y      K N++        HA+   +Q +P  R AL+D   
Sbjct: 164 TARAHTVLVLKPRFYNQRYAQLKARKQNLNHLLASGHIHALGRVIQQVPECRFALVDQFT 223

Query: 122 -----GRSIPEDLP-CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
                  ++    P  + +   KG++  +++AAASI+A   RD  + +  +     GF  
Sbjct: 224 RHNAIASTLETGFPGLKVYQQPKGEA-DMAVAAASILA---RDAFVEVMDQLSAQAGFPL 279

Query: 176 HVG---YPTAKHQQVIKEKGPSCIHR 198
             G     TA  +++++E+G   + +
Sbjct: 280 PKGGGDQATAAARKLVREQGKDALEQ 305


>gi|91772495|ref|YP_565187.1| ribonuclease HII [Methanococcoides burtonii DSM 6242]
 gi|121691891|sp|Q12YN9|RNH2_METBU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|91711510|gb|ABE51437.1| Ribonuclease HII [Methanococcoides burtonii DSM 6242]
          Length = 213

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 27/180 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI- 80
           + GIDE G+G + GP+ +  + +D +        G+ DSKK+S K+R  L  +I   A  
Sbjct: 3   IIGIDEAGKGPVIGPMCIGGVRIDEDKSNALKNLGVADSKKLSPKRRVHLAAQIKKYADG 62

Query: 81  ISISSASHQYIDK-------HNIHKATLDAIYHAVENLQVIPRSALID----GRSI---- 125
             +   S   ID+       ++I      ++   + + ++   +A +     G+ +    
Sbjct: 63  WFVYEVSPNQIDELRKLMSMNDIMVLAFGSVIEELPSDKIYADAADVKEERFGKRLFDNY 122

Query: 126 ----PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
               P+  P +  +    D +   ++AASI+AKV RD L+    K   D G D   GYP+
Sbjct: 123 MEKHPDVSPPEVISKHGADDLFPVVSAASILAKVRRDELI---EKIKVDMGVDIGSGYPS 179


>gi|322799751|gb|EFZ20956.1| hypothetical protein SINV_11176 [Solenopsis invicta]
          Length = 353

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 73/183 (39%), Gaps = 31/183 (16%)

Query: 28  GIDEVGRGALAGPVVV----AAIILDPNNIPFGINDSKKISHKKREELYEKIT------- 76
           G+DE GRG + GP+V     A +      +  G  DSK ++ KKR+E+++ I        
Sbjct: 84  GVDEAGRGPVLGPMVYGISYAPLSQKQLLVDLGCADSKSLTEKKRDEIFDDICERKENIG 143

Query: 77  ------SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
                 S  IIS S      +  + +   +   +        V      +D    PE   
Sbjct: 144 WAIEAISPNIISNSMYRRTKVSLNEVSMISATNLIQGAIEAGVNVAEIYVDTVGKPESYQ 203

Query: 131 CQAFAVIKGDSISLS---------IAAASIIAKVTRD---RLMRIAHKKYPDYGFDSHVG 178
            +   V  G  I ++         ++AASI AKVTRD   R  R    +  +  + S  G
Sbjct: 204 ARLKGVFPGIKIVVAKKADATYPIVSAASICAKVTRDHAIRAWRFREGENIETQYGS--G 261

Query: 179 YPT 181
           YPT
Sbjct: 262 YPT 264


>gi|91091718|ref|XP_966789.1| PREDICTED: similar to ribonuclease hi large subunit [Tribolium
           castaneum]
 gi|270001067|gb|EEZ97514.1| hypothetical protein TcasGA2_TC011359 [Tribolium castaneum]
          Length = 306

 Score = 44.7 bits (104), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 33/166 (19%)

Query: 26  VAGIDEVGRGALAGPVVVAAII--LDPNNIP--FGINDSKKISHKKREELYEKITSS--- 78
           + GIDE GRG + GP+V       L+   +P   G  DSK ++ + R+ ++ KI ++   
Sbjct: 39  ILGIDEAGRGPVLGPMVYGTAFCPLNEATLPDSLGCADSKALNEESRDVIFSKICANRKM 98

Query: 79  ----AIISISSASHQYI--DKHNIHKATLDAIYHAVE-------NLQVIPRSALIDGRSI 125
                +I+ +S  +  +   K+++++ ++DA  + ++       NL  +     +D    
Sbjct: 99  GWGVEVIAPNSICNSMLSRQKYSLNQVSMDAAINLIKMALKGGVNLSHV----YVDTVGP 154

Query: 126 PED--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMR 162
           PE          P     V  K DS    ++AASI AKVTRD  ++
Sbjct: 155 PEKYQAYLKSLFPNVGVTVAKKADSTFPIVSAASICAKVTRDYALK 200


>gi|291533380|emb|CBL06493.1| Ribonuclease HII [Megamonas hypermegale ART12/1]
          Length = 101

 Score = 44.7 bits (104), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 26/40 (65%)

Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN 51
          +  E   R      +AG+DEVGRG LAGPVVVA++IL  N
Sbjct: 56 YTFENECRANGYKLIAGVDEVGRGPLAGPVVVASVILPEN 95


>gi|121534428|ref|ZP_01666251.1| ribonuclease HIII [Thermosinus carboxydivorans Nor1]
 gi|121306921|gb|EAX47840.1| ribonuclease HIII [Thermosinus carboxydivorans Nor1]
          Length = 306

 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 93/208 (44%), Gaps = 41/208 (19%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77
           N W   G DE G+G   GP+V+AA+++D          G+ DSK +S +K + L ++I  
Sbjct: 94  NRW--IGSDESGKGDFFGPLVIAAVMVDAATAAALTASGVRDSKLLSDEKAKVLAQRIRE 151

Query: 78  -----SAIISISSASHQYI------DKHNIHKATLDAIYHAVENLQVIPRS----ALIDG 122
                 A++ I+ A +  +      +  N++   L A  HA    +V+ R+    AL+D 
Sbjct: 152 ICHGRFALVEITPAKYNVLYQRFRAEGKNLNH--LLAWAHASAIEEVLTRTPCRFALVDK 209

Query: 123 RSIPEDLPCQAFAVIKGDSISL----------SIAAASIIAKVTRDRLMRIAHKKYPDYG 172
            +    +  + FA  KG  I+L          ++AAASI+A   R+R +         Y 
Sbjct: 210 FADESLIRSRLFA--KGREITLVQAPRAEKNIAVAAASILA---RERFLYWIELFRVQYK 264

Query: 173 FDSHVGYPTA---KHQQVIKEKGPSCIH 197
            D   G   A     +  ++  G +C+H
Sbjct: 265 MDFPKGASAAVTDAARAFVQRYGKNCLH 292


>gi|49115760|gb|AAH73515.1| LOC443655 protein [Xenopus laevis]
          Length = 305

 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 78/183 (42%), Gaps = 30/183 (16%)

Query: 28  GIDEVGRGALAGPVVVA----AIILDPNNIPFGINDSKKISHKKREELYEKITSSA---- 79
           GIDE GRG + GP+V       +    +     + DSK +S   RE L+EK+  S+    
Sbjct: 35  GIDEAGRGPVLGPMVYGICYCPVARKKDLQDSKVADSKTLSEADRERLFEKLNGSSDYIG 94

Query: 80  ----IIS--ISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPEDLP 130
               I+S  I S S Q   K+N++  + D     ++   +  V      +D     E   
Sbjct: 95  WALHILSPNIISTSMQQRAKYNLNALSHDTAIGLIQFALDAGVQLTEVFVDTVGPAEKYQ 154

Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG---FDSHVG 178
            +   +          K DS+   ++AASI AKV RDR+++   K   D G    D   G
Sbjct: 155 EKLKKIFPELDVTVRPKADSLFPVVSAASICAKVARDRVVK-DWKFVEDLGELDADYGSG 213

Query: 179 YPT 181
           YP 
Sbjct: 214 YPN 216


>gi|39939117|ref|NP_950883.1| ribonuclease HII family 2 [Onion yellows phytoplasma OY-M]
 gi|39722226|dbj|BAD04716.1| ribonuclease HII Family 2 [Onion yellows phytoplasma OY-M]
          Length = 330

 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 25/156 (16%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHKKREELYEKITSS 78
            P  G DEVG G + GPV+V  + L   NI F      I +SKKIS +K  +L   I   
Sbjct: 117 LPSIGSDEVGTGDVFGPVIVCCVYLTAKNIVFLQKLGTIAESKKISDEKIMQLAPLIMKE 176

Query: 79  AIISISSAS----HQYIDKHNIHK--------ATLDAIYHAVENLQVI------PRSAL- 119
            I S+        +Q I + N++K        A    +  A  N+ VI      P++   
Sbjct: 177 VIYSVKIMMPLEYNQTIKQCNLNKIKALMHNEAIKQTVLKASPNVPVILDQFCFPKNYFN 236

Query: 120 -IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
            +  +    ++  +     K DS   S+A AS+IA+
Sbjct: 237 YLQDQKAQNEIYTKIIFETKADSSYFSVAVASVIAR 272


>gi|294501477|ref|YP_003565177.1| ribonuclease HIII [Bacillus megaterium QM B1551]
 gi|294351414|gb|ADE71743.1| ribonuclease HIII [Bacillus megaterium QM B1551]
          Length = 304

 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 25/167 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS---S 78
           V G DEVG G   GP+ V A  +    +P     G+ DSK+++  K  E+ +++ S    
Sbjct: 89  VIGSDEVGTGDYFGPMTVVAAYVQKEQLPLLKELGVRDSKELTDAKIIEIAKQLVSFIPY 148

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVEN-LQVI----PRSALIDGR-------- 123
           +++ + +  +    +  + +  + A+ H  A+ N L+ +    P + LID          
Sbjct: 149 SLLVLHNEKYNAFQEKGMSQGKMKALLHNKALSNVLKKLDPEKPDAILIDQFVEKNTYYK 208

Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                 E +    F   KG+S+ LS+AAASIIA+    + M +  +K
Sbjct: 209 HVVKEKEIIKENVFFSTKGESVHLSVAAASIIARYAFLKQMDLLTEK 255


>gi|163782002|ref|ZP_02177001.1| hypothetical protein HG1285_17754 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882534|gb|EDP76039.1| hypothetical protein HG1285_17754 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 272

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 18/145 (12%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISH----KKREELYEKIT 76
           P+AG DEVG+G L GP+V+   +++P N    +     DSK +      K+ E+L + + 
Sbjct: 79  PLAGCDEVGKGDLFGPLVLCCAVVNPENFKKVLSLSPKDSKSMKDDELLKRAEKLKKYVN 138

Query: 77  SSAIISISSASHQ-YIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIPEDLPCQA 133
              I+ +    ++ Y +  NI++   DA    V+++     P   +ID  S     P Q 
Sbjct: 139 RRCIVLMPERFNELYREYGNINRLMDDAYRKLVQSIVRDFRPVRVVIDRYSFRN--PFQD 196

Query: 134 FAVI----KGDSISLSIAAASIIAK 154
             V+    KG+   + ++ AS++A+
Sbjct: 197 MGVVDFLEKGER-DVVVSVASMLAR 220


>gi|301171214|ref|NP_001180335.1| ribonuclease H2, subunit A [Xenopus laevis]
 gi|71051192|gb|AAH99334.1| Unknown (protein for MGC:116529) [Xenopus laevis]
          Length = 302

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 30/183 (16%)

Query: 28  GIDEVGRGALAGPVVVA----AIILDPNNIPFGINDSKKISHKKREELYEKITSSA---- 79
           GIDE GRG + GP+V       +    +     + DSK +S   RE L+EK+  S+    
Sbjct: 32  GIDEAGRGPVLGPMVYGICYCPVARKKDLQDSKVADSKTLSEADRERLFEKLNGSSDYIG 91

Query: 80  ----IIS--ISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPEDLP 130
               I+S  + S S Q   K+N++  + D     ++   +  V      +D     E   
Sbjct: 92  WALHILSPNVISTSMQQRAKYNLNALSHDTAIGLIQFALDAGVQLTEVFVDTVGPAEKYQ 151

Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG---FDSHVG 178
            +   +          K DS+   ++AASI AKV RDR+++   K   D G    D   G
Sbjct: 152 EKLKKIFPELDVTVRPKADSLFPVVSAASICAKVARDRVVK-DWKFVEDLGELDADYGSG 210

Query: 179 YPT 181
           YP 
Sbjct: 211 YPN 213


>gi|70991314|ref|XP_750506.1| ribonuclease HI large subunit [Aspergillus fumigatus Af293]
 gi|66848138|gb|EAL88468.1| ribonuclease HI large subunit [Aspergillus fumigatus Af293]
          Length = 363

 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 72/177 (40%), Gaps = 37/177 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKREELYE----- 73
           V G+DE GRG + GP+V +A  + P+ +        +  NDSK ++   R  L       
Sbjct: 78  VLGVDEAGRGPVLGPMVYSAFYI-PHTLHHSLLARDYSFNDSKVLTPGVRANLMRLLCTA 136

Query: 74  ------------KITSSAIIS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118
                       K+ S+  IS   +   S  Y        AT++ I   VE  +V  R  
Sbjct: 137 GNPLHASCGWATKVLSARDISAGMMRPTSGAYNLNAQAMDATVEIIRGIVEERRVDIREV 196

Query: 119 LIDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK 166
            ID    P           P     V K  D++   ++AAS++AKVTRD  +   H+
Sbjct: 197 YIDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAKVTRDMALEFCHE 253


>gi|159130978|gb|EDP56091.1| ribonuclease HI large subunit [Aspergillus fumigatus A1163]
          Length = 363

 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 72/177 (40%), Gaps = 37/177 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKREELYE----- 73
           V G+DE GRG + GP+V +A  + P+ +        +  NDSK ++   R  L       
Sbjct: 78  VLGVDEAGRGPVLGPMVYSAFYI-PHTLHHSLLARDYSFNDSKVLTPGVRANLMRLLCTA 136

Query: 74  ------------KITSSAIIS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118
                       K+ S+  IS   +   S  Y        AT++ I   VE  +V  R  
Sbjct: 137 GNPLHASCGWATKVLSARDISAGMMRPTSGAYNLNAQAMDATVEIIRGIVEERRVDIREV 196

Query: 119 LIDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK 166
            ID    P           P     V K  D++   ++AAS++AKVTRD  +   H+
Sbjct: 197 YIDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAKVTRDMALEFCHE 253


>gi|161509314|ref|YP_001574973.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|282919917|ref|ZP_06327646.1| ribonuclease HIII [Staphylococcus aureus A9765]
 gi|304381303|ref|ZP_07363956.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|160368123|gb|ABX29094.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|282594633|gb|EFB99617.1| ribonuclease HIII [Staphylococcus aureus A9765]
 gi|304340286|gb|EFM06227.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|320141045|gb|EFW32892.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320143102|gb|EFW34892.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329313808|gb|AEB88221.1| Ribonuclease HIII [Staphylococcus aureus subsp. aureus T0131]
 gi|329728888|gb|EGG65309.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 21193]
 gi|329730784|gb|EGG67163.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 21189]
          Length = 318

 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 30/154 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G DE G G   GP+ V A  +   ++P     G++DSKK++  K  EL E++ +    S+
Sbjct: 105 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 164

Query: 84  SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127
            +  +   +K+NI +A       + A  H  A++N L+ I  S L    ID  +  E   
Sbjct: 165 LTLHN---EKYNIQQAKGWTQVKMKAALHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 221

Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154
                   LP +     KG+S SL+IA ASII++
Sbjct: 222 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 255


>gi|255731726|ref|XP_002550787.1| ribonuclease HI 35 large subunit [Candida tropicalis MYA-3404]
 gi|240131796|gb|EER31355.1| ribonuclease HI 35 large subunit [Candida tropicalis MYA-3404]
          Length = 356

 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 70/173 (40%), Gaps = 41/173 (23%)

Query: 26  VAGIDEVGRGALAGPVVVAAI-----ILDPNNIPFGINDSKKISHKKREELYEKI----- 75
           V G+DE GRG + GP+V           D     +G  DSK ++  KREEL+  I     
Sbjct: 79  VLGVDEAGRGPVLGPMVYGVAYALESFSDGLQKKYGFADSKVLTESKREELFRLIEESSD 138

Query: 76  -------------TSSAIISISSASHQYIDK--HNIHKATLDAIYHAVENLQVIPRSA-- 118
                        TS     ISS   Q   K  +N++    D   + ++  QV+ +    
Sbjct: 139 NEKGLSKVIGWATTSMTARDISSGMLQSSGKGAYNLNSQAHDVTINLIK--QVLKKGVKI 196

Query: 119 ---LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDR 159
               +D    P     +   +          K DSI   ++AAS++AKVTRD+
Sbjct: 197 SKIFVDTVGPPATYQAKLKGIFPDIEITVAKKADSIYPIVSAASVVAKVTRDK 249


>gi|258423817|ref|ZP_05686703.1| ribonuclease HIII [Staphylococcus aureus A9635]
 gi|257846049|gb|EEV70077.1| ribonuclease HIII [Staphylococcus aureus A9635]
          Length = 318

 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 30/154 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G DE G G   GP+ V A  +   ++P     G++DSKK++  K  +L E++ +    S+
Sbjct: 105 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVDLAEQLVTFIPHSL 164

Query: 84  SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127
            +  ++   K+NI +A       + A+ H  A++N L+ I  S L    ID  +  E   
Sbjct: 165 LTLHNE---KYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 221

Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154
                   LP +     KG+S SL+IA ASII++
Sbjct: 222 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 255


>gi|145605665|ref|XP_370462.2| hypothetical protein MGG_06959 [Magnaporthe oryzae 70-15]
 gi|145013464|gb|EDJ98105.1| hypothetical protein MGG_06959 [Magnaporthe oryzae 70-15]
          Length = 312

 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 19/150 (12%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD-PNNIPF-----GINDSKKISHKKREELYEKITSSA 79
           V G+DE GRG + GP+V     L  P + P        +DSK ++   R  L E + +  
Sbjct: 57  VLGVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRETHHFDDSKVLTPAVRSSLMESLCTPT 116

Query: 80  IISISSASHQYIDKH-NIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           +   + + +  +D+  N+ +  +D +       + + R             P     V K
Sbjct: 117 LSQSAGSLNSVMDRGVNVAEIYVDTVGPPAAYQKKLERF-----------FPTAKVTVSK 165

Query: 139 -GDSISLSIAAASIIAKVTRDRLMRIAHKK 167
             DS+   ++AAS+ AKVTRD  + + +K 
Sbjct: 166 KADSLYPCVSAASVCAKVTRDAALEVLYKN 195


>gi|49485978|ref|YP_043199.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MSSA476]
 gi|73917852|sp|Q6GA74|RNH3_STAAS RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|49244421|emb|CAG42849.1| putative ribonuclease [Staphylococcus aureus subsp. aureus MSSA476]
          Length = 312

 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 30/154 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G DE G G   GP+ V A  +   ++P     G++DSKK++  K  EL +++ +    S+
Sbjct: 99  GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELADQLVTFIPHSL 158

Query: 84  SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127
            +  ++   K+NI +A       + A+ H  A++N L+ I  S L    ID  +  E   
Sbjct: 159 LTLHNE---KYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYN 215

Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154
                   LP +     KG+S SL+IA ASII++
Sbjct: 216 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 249


>gi|94991140|ref|YP_599240.1| ribonuclease HIII [Streptococcus pyogenes MGAS10270]
 gi|166226675|sp|Q1JF63|RNH3_STRPD RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|94544648|gb|ABF34696.1| Ribonuclease HIII [Streptococcus pyogenes MGAS10270]
          Length = 300

 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 4/51 (7%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREEL 71
           P+ G DEVG G+  G + V A  +DP + PF    G++DSKK+S K  +++
Sbjct: 84  PIIGSDEVGNGSYFGGIAVVASFVDPKDHPFLKKLGVDDSKKLSDKTIQQI 134


>gi|296111199|ref|YP_003621580.1| ribonuclease HIII [Leuconostoc kimchii IMSNU 11154]
 gi|295832730|gb|ADG40611.1| ribonuclease HIII [Leuconostoc kimchii IMSNU 11154]
          Length = 307

 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 30/160 (18%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS- 78
           W V G DEVG GA  GP+  AA+ +   ++ +    GI DSK ++  K  ++  +I +  
Sbjct: 93  WSVLGSDEVGAGAYFGPLTTAAVFVSQRDLKWVRQLGIADSKTLTDDKMRQIAPEIIARL 152

Query: 79  ---AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI-------PRSALIDG------ 122
               +  +    +Q    +N+++  L AI H     +V+       P   LID       
Sbjct: 153 PHHVVNLMPEKYNQLQPTNNVNQ--LKAISHNFVLGKVLEKIDPTRPDGILIDQFAQEST 210

Query: 123 ------RSIPEDLPCQ-AFAVIKGDSISLSIAAASIIAKV 155
                 R+  + +  Q  +   KG+   LS+AAASI+A+V
Sbjct: 211 YFNYLQRAKQQHIIRQNVYFTTKGEQYHLSVAAASILARV 250


>gi|71904214|ref|YP_281017.1| ribonuclease HIII [Streptococcus pyogenes MGAS6180]
 gi|123639303|sp|Q48RJ8|RNH3_STRPM RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|71803309|gb|AAX72662.1| ribonuclease HIII [Streptococcus pyogenes MGAS6180]
          Length = 300

 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 4/51 (7%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREEL 71
           P+ G DEVG G+  G + V A  +DP + PF    G++DSKK+S K  +++
Sbjct: 84  PIIGSDEVGNGSYFGGIAVVASFVDPKDHPFLKKLGVDDSKKLSDKTIQQI 134


>gi|194213064|ref|XP_001495257.2| PREDICTED: similar to Ribonuclease H2 subunit A (RNase H2 subunit
           A) (Ribonuclease HI subunit A) (Ribonuclease HI large
           subunit) (RNase HI large subunit) (RNase H(35))
           (Aicardi-Goutieres syndrome 4 protein) (AGS4) [Equus
           caballus]
          Length = 299

 Score = 43.9 bits (102), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 74/181 (40%), Gaps = 28/181 (15%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK--------- 74
           G+DE GRG + GP+V A      + +       + DSK +S  +R+ L+ +         
Sbjct: 32  GVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFARMKEDGDFVG 91

Query: 75  ----ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
               + S  +IS S       + +++   T   +     +  V      +D   +PE   
Sbjct: 92  WALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLVQYALDQGVKVAQVFVDTVGMPETYQ 151

Query: 131 ---CQAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHVGY 179
               Q F  I      K DS+   ++AASI AKV RD+ ++     +K  D   D   GY
Sbjct: 152 QRLQQRFPGIEVTVKAKADSLYPVVSAASICAKVARDQAVKNWKFVEKLQDSDTDYGSGY 211

Query: 180 P 180
           P
Sbjct: 212 P 212


>gi|314936680|ref|ZP_07844027.1| ribonuclease HIII [Staphylococcus hominis subsp. hominis C80]
 gi|313655299|gb|EFS19044.1| ribonuclease HIII [Staphylococcus hominis subsp. hominis C80]
          Length = 308

 Score = 43.9 bits (102), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 34/156 (21%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS---SAI 80
           G DE G G   GP+ V A  +   +I      G++DSKK++  K  EL E++ +    ++
Sbjct: 93  GSDEAGSGDYFGPLTVCAAYVSKEHIDILRTLGVDDSKKLTDTKIIELAEQLITFIPHSL 152

Query: 81  ISISSASHQYIDKHNIHKATLDAIYH--AVENL--------------------QVIPRSA 118
           +++++  +         +  + A+ H  A++N+                     V  R A
Sbjct: 153 LTLNNTKYNERQALGWSQVKMKAVLHNEAIKNVTNKIDTKALDYIVIDQFAERNVYKRYA 212

Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
           L D   +P   P Q     KG+S SL+IAAASII++
Sbjct: 213 LSD---LP--FPNQTKFETKGESKSLAIAAASIISR 243


>gi|228476267|ref|ZP_04060969.1| ribonuclease hiii [Staphylococcus hominis SK119]
 gi|228269670|gb|EEK11172.1| ribonuclease hiii [Staphylococcus hominis SK119]
          Length = 308

 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 34/156 (21%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS---SAI 80
           G DE G G   GP+ V A  +   +I      G++DSKK++  K  EL E++ +    ++
Sbjct: 93  GSDEAGSGDYFGPLTVCAAYVSKEHIDILRTLGVDDSKKLTDTKIIELAEQLITFIPHSL 152

Query: 81  ISISSASHQYIDKHNIHKATLDAIYH--AVENL--------------------QVIPRSA 118
           +++++  +         +  + A+ H  A++N+                     V  R A
Sbjct: 153 LTLNNTKYNERQALGWSQVKMKAVLHNEAIKNVTNKIDTKALDYIVIDQFAERNVYKRYA 212

Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
           L D   +P   P Q     KG+S SL+IAAASII++
Sbjct: 213 LSD---LP--FPNQTKFETKGESKSLAIAAASIISR 243


>gi|301771221|ref|XP_002921051.1| PREDICTED: ribonuclease H2 subunit A-like [Ailuropoda melanoleuca]
 gi|281353030|gb|EFB28614.1| hypothetical protein PANDA_009861 [Ailuropoda melanoleuca]
          Length = 299

 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 28/194 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK------- 74
           V G+DE GRG + GP+V A      + +       + DSK +S  +R+ L+ K       
Sbjct: 30  VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFVKMEEDGDF 89

Query: 75  ------ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
                 + S  +IS S       + +++   T   +     +  V      +D    PE 
Sbjct: 90  VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGPPET 149

Query: 129 --------LPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177
                    P     V  K D++   ++AASI AKV RD+ ++  H  +   D   D   
Sbjct: 150 YQERLQERFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWHFVETLQDLDADYGS 209

Query: 178 GYPTAKHQQVIKEK 191
           GYP     +V   K
Sbjct: 210 GYPNDPKTKVWLRK 223


>gi|269940634|emb|CBI49013.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TW20]
          Length = 318

 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 30/154 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G DE G G   GP+ V A  +   ++P     G++DSKK++  K  EL E++ +    S+
Sbjct: 105 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 164

Query: 84  SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127
            +  +   +K+NI +A       + A  H  A++N L+ I  S L    ID  +  E   
Sbjct: 165 LTLHN---EKYNIQQAKGWTQVKMKAALHNEAIKNVLKKIDSSQLDYIVIDQFAKREVYS 221

Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154
                   LP +     KG+S SL+IA ASII++
Sbjct: 222 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 255


>gi|251810588|ref|ZP_04825061.1| ribonuclease HIII [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876412|ref|ZP_06285279.1| ribonuclease HIII [Staphylococcus epidermidis SK135]
 gi|251805748|gb|EES58405.1| ribonuclease HIII [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295437|gb|EFA87964.1| ribonuclease HIII [Staphylococcus epidermidis SK135]
          Length = 308

 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 28/159 (17%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
           N +   G DE G G   GP+ V A  +  ++I      G++DSKK+S  K  +L E++ +
Sbjct: 86  NRFHCIGSDEAGSGDYFGPLTVCAAYVSQSHIKILKELGVDDSKKLSDTKIVDLAEQLIT 145

Query: 78  ---SAIISISSASHQYIDKHNI--HKATLDAIYH--AVEN-LQVIPRSAL----IDGRSI 125
               +++++ +   +Y ++ +I   +  + A+ H  A++N LQ I +  L    ID  + 
Sbjct: 146 FIPHSLLTLDNV--KYNERQSIGWSQVKMKAVLHNEAIKNVLQKIEQDQLDYIVIDQFAK 203

Query: 126 PEDLPCQAFAVI----------KGDSISLSIAAASIIAK 154
            E     A + +          KG+S SL+IAAASII++
Sbjct: 204 REVYQHYALSALPFPDKTKFETKGESKSLAIAAASIISR 242


>gi|57651749|ref|YP_186013.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus COL]
 gi|87161110|ref|YP_493737.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194841|ref|YP_499639.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151221263|ref|YP_001332085.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus str. Newman]
 gi|221140462|ref|ZP_03564955.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|258451837|ref|ZP_05699858.1| ribonuclease HIII [Staphylococcus aureus A5948]
 gi|262051696|ref|ZP_06023915.1| ribonuclease HIII [Staphylococcus aureus 930918-3]
 gi|284024065|ref|ZP_06378463.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 132]
 gi|294848130|ref|ZP_06788877.1| ribonuclease HIII [Staphylococcus aureus A9754]
 gi|73917848|sp|Q5HGU4|RNH3_STAAC RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|122539781|sp|Q2FZD7|RNH3_STAA8 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|123486345|sp|Q2FHU1|RNH3_STAA3 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|172048827|sp|A6QG41|RNH3_STAAE RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|57285935|gb|AAW38029.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus COL]
 gi|87127084|gb|ABD21598.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202399|gb|ABD30209.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150374063|dbj|BAF67323.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus str. Newman]
 gi|257860445|gb|EEV83272.1| ribonuclease HIII [Staphylococcus aureus A5948]
 gi|259160431|gb|EEW45456.1| ribonuclease HIII [Staphylococcus aureus 930918-3]
 gi|294824930|gb|EFG41352.1| ribonuclease HIII [Staphylococcus aureus A9754]
 gi|302750963|gb|ADL65140.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|315196863|gb|EFU27206.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus CGS01]
          Length = 312

 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 30/154 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G DE G G   GP+ V A  +   ++P     G++DSKK++  K  EL E++ +    S+
Sbjct: 99  GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 158

Query: 84  SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127
            +  ++   K+NI +A       + A  H  A++N L+ I  S L    ID  +  E   
Sbjct: 159 LTLHNE---KYNIQQAKGWTQVKMKAALHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 215

Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154
                   LP +     KG+S SL+IA ASII++
Sbjct: 216 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 249


>gi|156082533|ref|XP_001608751.1| ribonuclease H [Babesia bovis T2Bo]
 gi|154796000|gb|EDO05183.1| ribonuclease H, putative [Babesia bovis]
          Length = 264

 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 34/184 (18%)

Query: 28  GIDEVGRGALAGPVVVAAII---------LDPNNIPFGINDSKKISHKKREELYEKITS- 77
           GIDE GRG + GP+V  + +         +  +NI  G++DSKK++   R+  +  +   
Sbjct: 6   GIDEAGRGPVLGPMVYGSFVCPIGDEYRRMLKDNI--GVDDSKKLTASLRDSKFRALNGP 63

Query: 78  -------SAIISISSASHQYIDK--HNIHKATLDAI-----YHAVENLQVIPRSALIDGR 123
                  + +I+    S++ + +  +N++  + D+      Y+  +   +        G 
Sbjct: 64  ETPFAMCAEVITPRYISYKMLQREAYNLNNISHDSAIALIRYYISQGFNITEVYVDAVGP 123

Query: 124 SIP-EDLPCQAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
           +   E +  Q F  I      K DSI   ++AASI+AKV RD ++    K  P+   D  
Sbjct: 124 AAKYEAMLTQLFPKIKCVVANKADSIFPVVSAASIVAKVIRDNIIDSWFKDSPE-RVDVG 182

Query: 177 VGYP 180
            GYP
Sbjct: 183 SGYP 186


>gi|223043745|ref|ZP_03613788.1| ribonuclease hiii [Staphylococcus capitis SK14]
 gi|222442842|gb|EEE48944.1| ribonuclease hiii [Staphylococcus capitis SK14]
          Length = 310

 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 24/157 (15%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
           N +   G DE G G   GP+ V A  +   N       G++DSKK++  K  EL E++ +
Sbjct: 89  NKYNCIGSDEAGSGDYFGPLTVCAAYVSEKNAQVLKTLGVDDSKKLTDDKIVELAEQLIT 148

Query: 78  ---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-QVIPRSAL----IDGRSIPE 127
               +++++++  +    K    +  + A+ H  A++N+ Q I    L    ID  +  E
Sbjct: 149 FIPHSLLTLNNVKYNERQKMGWSQVKMKAVLHNEAIKNVVQKIDVDHLDYIVIDQFAKRE 208

Query: 128 ----------DLPCQAFAVIKGDSISLSIAAASIIAK 154
                       P +     KG+S SL+IAAASII++
Sbjct: 209 VYQHYALSELPFPKKTQFETKGESKSLAIAAASIISR 245


>gi|145238902|ref|XP_001392098.1| ribonuclease H2 subunit A [Aspergillus niger CBS 513.88]
 gi|134076599|emb|CAK45152.1| unnamed protein product [Aspergillus niger]
          Length = 352

 Score = 43.5 bits (101), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 37/177 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKREELYE----- 73
           + G+DE GRG + GP+V +A  L P ++        +  NDSK ++   R  L +     
Sbjct: 68  ILGVDEAGRGPVLGPMVYSAFYL-PQDLHHTLLTRDYSFNDSKALTPGVRANLMKLLCTP 126

Query: 74  ------------KITSSAIIS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118
                       K+ S+  IS   +   +  Y        AT++ I   +E+  +  R  
Sbjct: 127 GNPLHESCGWAVKLLSARDISSGMMRPGTGAYNLNAQAMDATIELIRGIIEDRNMDVREV 186

Query: 119 LIDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK 166
            ID    P           P     V K  DS+   ++AAS+ AKVTRD  + + H+
Sbjct: 187 YIDTIGNPATYQQKLEKIFPSLRITVAKKADSLYPCVSAASVAAKVTRDVALDLCHQ 243


>gi|330685731|gb|EGG97367.1| ribonuclease HIII [Staphylococcus epidermidis VCU121]
          Length = 259

 Score = 43.5 bits (101), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 34/162 (20%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
           N +   G DE G G   GP+ V A  +  +++      G++DSKK++  K  EL E++ +
Sbjct: 90  NQYNCIGSDEAGSGDYFGPLTVCAAYVTKDHVKILKELGVDDSKKLTDAKIVELAEQLVT 149

Query: 78  ---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL--------------------Q 112
               +++++ +  +    +    +  + A+ H  A+ N+                     
Sbjct: 150 FIPHSLLTLDNVKYNERQRAGWSQVKMKAVLHNQAIANVVQKIDAPSLDYIVIDQFAERG 209

Query: 113 VIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
           V  R AL D   +P   P +     KG+S SL+IAAASII++
Sbjct: 210 VYQRYALSD---LP--FPNKTKFETKGESKSLAIAAASIISR 246


>gi|84489361|ref|YP_447593.1| putative ribonuclease HIII [Methanosphaera stadtmanae DSM 3091]
 gi|84372680|gb|ABC56950.1| putative ribonuclease HIII [Methanosphaera stadtmanae DSM 3091]
          Length = 309

 Score = 43.5 bits (101), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKI 75
           + G DE G+G   GP+VV A+    ++I      G+ DSKK+S K+   LYEKI
Sbjct: 112 IIGSDETGKGEWYGPLVVCAVCTSNDDILKLKSIGVKDSKKLSTKEIFSLYEKI 165


>gi|121702279|ref|XP_001269404.1| ribonuclease HI large subunit [Aspergillus clavatus NRRL 1]
 gi|119397547|gb|EAW07978.1| ribonuclease HI large subunit [Aspergillus clavatus NRRL 1]
          Length = 362

 Score = 43.5 bits (101), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 72/179 (40%), Gaps = 37/179 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKREELYE----- 73
           V G+DE GRG + GP+V +A  L P+ +        +  +DSK ++   R  L       
Sbjct: 79  VLGVDEAGRGPVLGPMVYSAFYL-PHTLHHSLLARDYSFDDSKVLTAGVRANLMRLLCTA 137

Query: 74  ------------KITSSAIIS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118
                       K+ S+  IS   +   S  Y        AT++ I   VE  +V  R  
Sbjct: 138 GNPLHASCGWATKLLSARDISSGMMRPGSGVYNLNAQAMDATVEIIRGIVEERKVDVREV 197

Query: 119 LIDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
            ID    P           P     V K  DS+   ++AAS+ AKVTRD  + + H  +
Sbjct: 198 YIDTIGNPATYQQKLERIFPTLKITVAKKADSLYPCVSAASVAAKVTRDVALELCHDAF 256


>gi|257870169|ref|ZP_05649822.1| ribonuclease HIII [Enterococcus gallinarum EG2]
 gi|257804333|gb|EEV33155.1| ribonuclease HIII [Enterococcus gallinarum EG2]
          Length = 311

 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 24/158 (15%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREEL---YEK 74
           + W V G DEVG G+  GP+VV A+    + +P     G+ DSK ++  +   +    +K
Sbjct: 91  SQWSVVGSDEVGNGSYFGPLVVCAVYASKDQLPALKALGVKDSKMLTDPQIRAMAPKIKK 150

Query: 75  ITSSAIISISSASHQYID-KHNIHKATLDAIYHAVE-NLQVI----PRSALIDG------ 122
           +    ++++    +  I  K+N  +  +     A+   LQ I    P + LID       
Sbjct: 151 LVPYQLLTVEPTKYNEIQPKYNTVRMKVALHNQAIRLLLQKIAPKTPDAILIDQFTSEKN 210

Query: 123 -----RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKV 155
                +S    +  + F   KG+   L++AAASI+ + 
Sbjct: 211 YRTYLKSEKNQITEKLFFATKGEQYHLAVAAASILCRT 248


>gi|283769498|ref|ZP_06342394.1| ribonuclease HIII [Bulleidia extructa W1219]
 gi|283103766|gb|EFC05152.1| ribonuclease HIII [Bulleidia extructa W1219]
          Length = 281

 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 73/178 (41%), Gaps = 26/178 (14%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS 78
           ++P AG DEVG G   GPVVV A  +  N +     +GI DSK +S K  ++  + + + 
Sbjct: 69  LYPQAGSDEVGTGDYFGPVVVCASYVCENQLDLLRSYGITDSKAMSDKDIQKAAKSLQNQ 128

Query: 79  AIISISSAS-HQYIDKH-----NIHKATL-DAIYHAVENLQVIPRSALIDGRSI------ 125
               I S S   Y D H     N  KA L +  Y A+     +P   ++D  +       
Sbjct: 129 FTHVIFSLSPKAYNDLHRRYNMNATKALLHNQAYLALSKRVDLPEICMVDQFTAEKNYFS 188

Query: 126 -----PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
                PE      F   K +S   S+A AS+ A   R+R +         Y F    G
Sbjct: 189 YLAYEPEIFHRLQFET-KAESRYASVALASVFA---RNRFLEEWSYMEEKYNFHFQKG 242


>gi|328774049|gb|EGF84086.1| hypothetical protein BATDEDRAFT_8789 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 290

 Score = 43.1 bits (100), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 34/187 (18%)

Query: 26  VAGIDEVGRGALAGPVVVA---AIILDPNNIP-FGINDSKKISHKKREELY---EKITSS 78
           + G+DE GRG + GP+V A    +I   + +   G  DSK ++  +R++L+   EK +  
Sbjct: 63  ILGVDEAGRGPVLGPMVYAVCYTLISHQDKLKDIGFADSKVLNETQRDKLFATIEKQSEW 122

Query: 79  AIISISSASHQYIDKHNIHKA--TLDAIYH--------AVENLQVIPRSALIDGRSIPED 128
              + +  S Q I +  + +A   L+A+ H        +V +  V  +   +D    PE 
Sbjct: 123 IGWAATVCSPQDISESMLRRAKYNLNALAHDTTINLIQSVLDQGVNIQEVYVDTVGSPES 182

Query: 129 LPCQA---FAVI-------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH-- 176
              +    F  I       K DS+   ++AASI AKVTRD ++   + ++ + G DS   
Sbjct: 183 YQAKLAKRFPKIGKIVVSKKADSLFPIVSAASICAKVTRDAIL--CNWEFVEPGIDSTQR 240

Query: 177 ---VGYP 180
               GYP
Sbjct: 241 AFGSGYP 247


>gi|226287752|gb|EEH43265.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb18]
          Length = 343

 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 72/176 (40%), Gaps = 35/176 (19%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG------INDSKKISHKKREELYE------ 73
           V G+DE GRG + GP+V +A  L  +            +DSK ++   R  L        
Sbjct: 58  VLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTPAVRTNLMRLLCTPD 117

Query: 74  -----------KITSSAIIS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
                      K+ S+  IS   + S +  Y        AT++ I   VE + V  +   
Sbjct: 118 HSLNTSCGWGVKVMSARDISTGMLRSGTGNYNLNAQAMDATIELIICIVEKMGVNVKEVY 177

Query: 120 IDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK 166
           ID    PE          P     V K  DS+  S++AAS+ AKVTRD  + + ++
Sbjct: 178 IDTVGNPETYQKKLKRIFPALKITVTKKADSLYPSVSAASVCAKVTRDVALELCYE 233


>gi|52081363|ref|YP_080154.1| ribonuclease HIII [Bacillus licheniformis ATCC 14580]
 gi|52786740|ref|YP_092569.1| ribonuclease HIII [Bacillus licheniformis ATCC 14580]
 gi|319647270|ref|ZP_08001492.1| ribonuclease HIII [Bacillus sp. BT1B_CT2]
 gi|73917844|sp|Q65GD8|RNH3_BACLD RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|52004574|gb|AAU24516.1| ribonuclease HIII [Bacillus licheniformis ATCC 14580]
 gi|52349242|gb|AAU41876.1| RnhC [Bacillus licheniformis ATCC 14580]
 gi|317390617|gb|EFV71422.1| ribonuclease HIII [Bacillus sp. BT1B_CT2]
          Length = 313

 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 24/155 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS--- 78
           V G DEVG G   GP+ VA +  D   +P     G+ DSK +   +  ++   +  +   
Sbjct: 98  VIGSDEVGTGDYFGPITVACVYADKAKLPLLKELGVKDSKNLKDPQIVQIARDLIKTVPY 157

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSIP----- 126
           +++ + +  +  + +  + +  + A+ H  A+ NL        P + LID  + P     
Sbjct: 158 SLLVLRNEKYNEMQEKGMSQGKMKALLHNQAIGNLLKKLDGTRPEAILIDQFAEPAVYFK 217

Query: 127 -----EDLPCQAFAVIKGDSISLSIAAASIIAKVT 156
                  +  + +   K + I LS+AAASIIA+ +
Sbjct: 218 HLAGKTAVKERTYFSTKAEGIHLSVAAASIIARYS 252


>gi|225684872|gb|EEH23156.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb03]
          Length = 343

 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 72/176 (40%), Gaps = 35/176 (19%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG------INDSKKISHKKREELYE------ 73
           V G+DE GRG + GP+V +A  L  +            +DSK ++   R  L        
Sbjct: 58  VLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTPAVRTNLMRLLCTPD 117

Query: 74  -----------KITSSAIIS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
                      K+ S+  IS   + S +  Y        AT++ I   VE + V  +   
Sbjct: 118 HSLNTSCGWGVKVMSARDISTGMLRSGTGNYNLNAQAMDATIELIICIVEKMGVNVKEVY 177

Query: 120 IDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK 166
           ID    PE          P     V K  DS+  S++AAS+ AKVTRD  + + ++
Sbjct: 178 IDTVGNPETYQKKLKRIFPALKITVTKKADSLYPSVSAASVCAKVTRDVALELCYE 233


>gi|145479147|ref|XP_001425596.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124392667|emb|CAK58198.1| unnamed protein product [Paramecium tetraurelia]
          Length = 297

 Score = 43.1 bits (100), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 46/195 (23%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN------DSKKISHKKREELYEKITS 77
           W + GIDE GRG + GP++ A+    P      I+      DSK+I+   R++L++ +T 
Sbjct: 32  WQL-GIDEAGRGPVLGPMLYASCYW-PTKYHKLISETCKFVDSKQINEAARDKLFDVLTQ 89

Query: 78  --SAIISISS--ASHQYIDKHNIHKAT--LDAIYH--AVENLQVIPRSALIDGRSIPEDL 129
               +++  +   + +Y+ K+ +   T  L+ I H  A E +Q    SA+  G  I E  
Sbjct: 90  LKGKVLTFETRELTAEYLSKNQLAHLTINLNDISHNTAAELIQ----SAIQKGYKITEIF 145

Query: 130 -----PCQAFAVI------------------KGDSISLSIAAASIIAKVTRD-RLMRIAH 165
                P Q +                     K DS   +++AASI AKVTRD R+  I  
Sbjct: 146 VDTVGPKQTYKNFLQGKLQEIGKEANIVVEEKADSKYANVSAASICAKVTRDYRITLIQQ 205

Query: 166 KKYPDYGFDSHVGYP 180
           +  P+    S  GYP
Sbjct: 206 EILPNDSIGS--GYP 218


>gi|15668305|ref|NP_247101.1| ribonuclease HII [Methanocaldococcus jannaschii DSM 2661]
 gi|2495822|sp|Q57599|RNH2_METJA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|1590900|gb|AAB98116.1| ribonuclease HII (rnhB) [Methanocaldococcus jannaschii DSM 2661]
          Length = 230

 Score = 43.1 bits (100), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 36/188 (19%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG + GP+VV A  +    +      G+ DSK+++  KR  L + + +   +
Sbjct: 3   IIGIDEAGRGPVLGPMVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYLKKLLENLGYV 62

Query: 82  S--ISSAS--HQYIDKHNIHKATLDAIYHAVENL-----------QVIPRSALIDGRSIP 126
              I  A   +Q ++  N++   ++A     +NL           ++   +   + +   
Sbjct: 63  EKRILEAEEINQLMNSINLNDIEINAFSKVAKNLIEKLNIRDDEIEIYIDACSTNTKKFE 122

Query: 127 EDLPCQAFAVIKGDSISLSI-------------AAASIIAKVTRDRLMRIAHKKYPDYGF 173
           +    +   +IK  ++++ I             +AASIIAK  RD ++    K Y D G 
Sbjct: 123 DSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAKAERDEIIDYYKKIYGDIG- 181

Query: 174 DSHVGYPT 181
               GYP+
Sbjct: 182 ---SGYPS 186


>gi|213404976|ref|XP_002173260.1| ribonuclease H2 subunit A [Schizosaccharomyces japonicus yFS275]
 gi|212001307|gb|EEB06967.1| ribonuclease H2 subunit A [Schizosaccharomyces japonicus yFS275]
          Length = 321

 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 33/164 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI---PFGINDSKKISHKKREELYEKIT------ 76
           V G+DE GRG + GP+V  A+   P  +    +G  DSK+++ +KR +L + +       
Sbjct: 61  VLGVDEAGRGPVLGPMVY-AVAFCPTELKLSEYGFADSKQLTAEKRTQLLQAVCDRNNPA 119

Query: 77  ------SSAIIS---ISSASHQYIDKHNIH-----------KATLDAIYHAVE-NLQVIP 115
                 ++ +++   IS    + +DK+N++           ++ L A Y+  E  +  + 
Sbjct: 120 STSIGWATTVMTARDISRGMLRRVDKYNLNAQAHDSTIALIQSVLKAGYNISEIYVDTVG 179

Query: 116 RSALIDGRSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRD 158
             A+   + +    P     V  K DS+   ++ ASI AKVTRD
Sbjct: 180 PPAVYQAK-LQNRFPQAKVTVTKKADSLFPIVSLASICAKVTRD 222


>gi|197294741|ref|YP_001799282.1| Ribonuclease HII family protein [Candidatus Phytoplasma
           australiense]
 gi|171854068|emb|CAM12041.1| Ribonuclease HII family protein [Candidatus Phytoplasma
           australiense]
          Length = 301

 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 34/155 (21%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHKKREE----LYEKITSS 78
           G DEVG G + GP++V ++ + P NI F      +++SK++  K   +    + +K+  +
Sbjct: 90  GSDEVGTGDVFGPIIVCSVYIPPQNITFFQKKIFLSESKQMLDKNIIQTVPLIMDKVIKT 149

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR-------------------SAL 119
            +    S  ++ I  +N++K  + A+ H +  LQ + +                   + L
Sbjct: 150 IVTLKPSKYNKLIVNNNLNK--IKALMHNLSILQTVEKINKAVPVILDQFCLPKLYFNYL 207

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
            D  S+ + +  Q     K DS  LS+A AS+IA+
Sbjct: 208 KDETSVYQKINFQT----KADSNYLSVAVASLIAR 238


>gi|70726822|ref|YP_253736.1| ribonuclease HIII [Staphylococcus haemolyticus JCSC1435]
 gi|123659928|sp|Q4L5E5|RNH3_STAHJ RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|68447546|dbj|BAE05130.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 310

 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 35/179 (19%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
           N +   G DE G G   GP+ V A  +   N+      G++DSKK++ +K  EL E++ +
Sbjct: 89  NHYNCIGSDEAGSGDYFGPLTVCAAYVSKENVKILKTLGVDDSKKLNDQKIIELAEQLIT 148

Query: 78  SAIISISSASH-QYIDKHNI------HKATL--DAIYHAVENLQ---------------- 112
               S+ +  + +Y D+  I       KA L  +AI +  + +                 
Sbjct: 149 FIPHSLLTLDNPKYNDRQAIGWSQVKMKAELHNEAIKNVTQKINCNELNYIVIDQFAVRG 208

Query: 113 VIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM-RIAHKKYPD 170
           V  R AL    S+P   P +     KG+S SL+IAAASII++    + M  I+HK   D
Sbjct: 209 VYQRYAL---SSLP--YPEKTKFETKGESKSLAIAAASIISRYAFVKHMDHISHKMKQD 262


>gi|295399299|ref|ZP_06809281.1| ribonuclease HIII [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978765|gb|EFG54361.1| ribonuclease HIII [Geobacillus thermoglucosidasius C56-YS93]
          Length = 306

 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 42/161 (26%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIIL---DPNN--IPFGINDSKKISH-------------- 65
           P  G DE G+G   GP+V A+ +L   D  N  I  G+ DSKKIS+              
Sbjct: 97  PRIGTDESGKGDFFGPLVTASFLLQSKDAENKLIAIGVTDSKKISNKQIIALASEIKKIG 156

Query: 66  ---------KKREELYEKITS-SAIISISSAS--HQYIDKHNIHKATLDAIYHAVENLQV 113
                    KK  ELY KI + + ++  S A      + K+N   A  D         ++
Sbjct: 157 PYSIVKIGPKKYNELYAKIGNLNNLLGWSHARAIENILTKYNCSVAVADQFGDE----KI 212

Query: 114 IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
           I  S L +G+ I      + +   KG++  +++AAASI+A+
Sbjct: 213 IKNSLLKNGKEI------KLYQFHKGEN-DIAVAAASILAR 246


>gi|313901027|ref|ZP_07834515.1| ribonuclease HIII [Clostridium sp. HGF2]
 gi|312953985|gb|EFR35665.1| ribonuclease HIII [Clostridium sp. HGF2]
          Length = 300

 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 32/161 (19%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKIS----HKKREELY 72
           K ++P AG DEVG G   GPV V A  +   ++ F    GI DSK I      +   +L 
Sbjct: 87  KAIYPQAGSDEVGTGDYFGPVTVCATCVRHEDVEFLRSLGIQDSKAIDDTAIRRMAPKLM 146

Query: 73  EKITSSAIISISSASHQYIDKHNIHKATL-----DAIYHAVENLQVIPRSALIDG----- 122
           E++  S +I + +A++  I   N   A        A  H  + +  +P+  +ID      
Sbjct: 147 ERLPHSLLI-LDNATYNRIHGENNMVAIKSRMHNQAYVHLRKKMGSLPQFCIIDQFVQKT 205

Query: 123 ---------RSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                    R +  D+  +     K ++  LS+AA SIIA+
Sbjct: 206 SYYRYLKHEREVVYDIHFET----KAENKYLSVAAGSIIAR 242


>gi|157364353|ref|YP_001471120.1| ribonuclease HII/HIII [Thermotoga lettingae TMO]
 gi|157314957|gb|ABV34056.1| ribonuclease HII/HIII [Thermotoga lettingae TMO]
          Length = 305

 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 70/154 (45%), Gaps = 28/154 (18%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKIT 76
           KN+ P  G DEVG+G + GPVVV A+ +            I DSK I+ +K  E+ +KI 
Sbjct: 97  KNILPAIGSDEVGKGDVFGPVVVTAVYIGCKEYVALKDVDIKDSKSINDRKILEISKKIK 156

Query: 77  SSAIISISSASHQYIDKHNIHKATL------DAIYHAVENLQVIPRSALI---------- 120
           +    +I     + +++  I+   L      DAI   +E      RS+LI          
Sbjct: 157 NICPHAIVVFEPERLNEKKINMNRLLEQMHIDAISRVLE-----KRSSLIAVYDDFGAKK 211

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
           D     E L    F   K    +L++AAASI+++
Sbjct: 212 DRMRSVEQLTLIGF---KNGERNLAVAAASIVSR 242


>gi|296810182|ref|XP_002845429.1| ribonuclease H2 subunit A [Arthroderma otae CBS 113480]
 gi|238842817|gb|EEQ32479.1| ribonuclease H2 subunit A [Arthroderma otae CBS 113480]
          Length = 342

 Score = 42.7 bits (99), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 23/163 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-------NDSKKISHKKREELYEKITSS 78
           V GIDE GRG + GP+V +A  L P ++   +       +DS  + +     +  K+ S+
Sbjct: 68  VLGIDEAGRGPVLGPMVYSAFYL-PMHLHKSLLAEEHHFDDSHSLHNSCGWAV--KVMSA 124

Query: 79  AIISISSASHQYIDKHNIHKATLDA----IYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
             IS           +N++   LDA    I   VE  ++  +   +D    PE    +  
Sbjct: 125 RDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQRIDVKEVYVDTIGKPETHQARLL 184

Query: 135 AVIKG---------DSISLSIAAASIIAKVTRDRLMRIAHKKY 168
            V  G         DS+  S++AAS+ AKVTRD  +   +  +
Sbjct: 185 RVFPGLKITVAKKADSLYPSVSAASVCAKVTRDAALEACYDNW 227


>gi|260781395|ref|XP_002585798.1| hypothetical protein BRAFLDRAFT_233701 [Branchiostoma floridae]
 gi|229270848|gb|EEN41809.1| hypothetical protein BRAFLDRAFT_233701 [Branchiostoma floridae]
          Length = 301

 Score = 42.7 bits (99), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 26/161 (16%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA---- 79
           GIDE GRG + GP+V        +        G  DSK ++ ++RE+L+E I  +     
Sbjct: 32  GIDEAGRGPVLGPMVYGICYCPLSGQDRLKDMGFADSKTLTEEQREKLFEAIAGAGEFMG 91

Query: 80  ----IISISSASHQYI--DKHNIHKATLDAIYHAVE-------NLQVIPRSALIDGRSIP 126
               I++ ++ S+  +   K+N++  + D     ++       NLQ +    + D     
Sbjct: 92  WTIHILAPNAISNCMLRRSKYNLNTLSHDTAIGLIQRTLDSGVNLQEVYVDTVGDATKYQ 151

Query: 127 EDL----PCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMR 162
           + L    P     V  K D+    ++AASI AKV RDR ++
Sbjct: 152 DKLKGIFPDLDITVTPKADAKFPIVSAASICAKVARDRAVK 192


>gi|313633654|gb|EFS00411.1| ribonuclease hiii [Listeria seeligeri FSL N1-067]
          Length = 296

 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 25/154 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78
           V G DEVG G   GP+ V A  ++   +P     G+ DSK +   +   + EKI      
Sbjct: 81  VLGSDEVGTGDFFGPITVCAAYVEETIMPLLKELGVKDSKAMKDPEICRIAEKIMPVVPH 140

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVEN-LQVI----PRSALIDGRS------- 124
           +++   +  +  +    +++  + A+ H  A+EN L+ I    P + LID  +       
Sbjct: 141 SVLLCPNPKYNEMQSRGMNQGQMKALLHNRALENVLKKIAPTKPEAILIDQFAEKNTYYR 200

Query: 125 ----IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                P  +    F   K + + LS+AAASIIA+
Sbjct: 201 YLAKEPTIIRENVFFATKAEGLHLSVAAASIIAR 234


>gi|260794677|ref|XP_002592334.1| hypothetical protein BRAFLDRAFT_285333 [Branchiostoma floridae]
 gi|229277552|gb|EEN48345.1| hypothetical protein BRAFLDRAFT_285333 [Branchiostoma floridae]
          Length = 303

 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 26/161 (16%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA---- 79
           GIDE GRG + GP+V        +        G  DSK ++ ++RE+L+E I  +     
Sbjct: 32  GIDEAGRGPVLGPMVYGICYCPLSGQDRLKDMGFADSKTLTEEQREKLFEAIAGAGEFMG 91

Query: 80  ----IISISSASHQYI--DKHNIHKATLDAIYHAVE-------NLQVIPRSALIDGRSIP 126
               I++ ++ S+  +   K+N++  + D     ++       NLQ +    + D     
Sbjct: 92  WTIHILAPNAISNCMLRRSKYNLNTLSHDTAIGLIQRTLDSGVNLQEVYVDTVGDATKYQ 151

Query: 127 EDL----PCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMR 162
           + L    P     V  K D+    ++AASI AKV RDR ++
Sbjct: 152 DKLKGIFPDLDITVTPKADAKFPIVSAASICAKVARDRAVK 192


>gi|170290760|ref|YP_001737576.1| ribonuclease HII/HIII [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174840|gb|ACB07893.1| ribonuclease HII/HIII [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 167

 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 42/157 (26%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAIISI 83
           G DE G+G   GP+VVAA+ LD     F    G+ +SK +  K+ EEL     +  I  +
Sbjct: 9   GSDEAGKGEREGPIVVAAVALDGEGRKFLRARGLLESKSVPKKRIEEL-----AGLIREV 63

Query: 84  SSASH----------QYIDKHNI-------HKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           S +SH          +  ++ N+       H   +  +    E  ++I  S   D R + 
Sbjct: 64  SISSHVKRVSPEELRELWNRGNLNDLLSIWHFEVVKEVLKDTEACRIIVDS--FDRRRLE 121

Query: 127 EDLPCQAFAVIKGDSISL---------SIAAASIIAK 154
           E     AF+ IKG  + +         S+AAASI+AK
Sbjct: 122 E-----AFSQIKGIEVIIESGADLKYPSVAAASILAK 153


>gi|289434477|ref|YP_003464349.1| ribonuclease HIII, putative [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170721|emb|CBH27261.1| ribonuclease HIII, putative [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 296

 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 25/154 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78
           V G DEVG G   GP+ V A  ++   +P     G+ DSK +   +   + EKI      
Sbjct: 81  VLGSDEVGTGDFFGPITVCAAYVEETIMPLLKELGVKDSKAMKDPEICRIAEKIMPVVPH 140

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVEN-LQVI----PRSALIDGRS------- 124
           +++   +  +  +    +++  + A+ H  A+EN L+ I    P + LID  +       
Sbjct: 141 SVLLCPNPKYNEMQSRGMNQGQMKALLHNRALENVLKKIAPTKPEAILIDQFAEKNTYYR 200

Query: 125 ----IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                P  +    F   K + + LS+AAASIIA+
Sbjct: 201 YLAKEPTIIRENVFFATKAEGLHLSVAAASIIAR 234


>gi|260584114|ref|ZP_05851862.1| ribonuclease HIII [Granulicatella elegans ATCC 700633]
 gi|260158740|gb|EEW93808.1| ribonuclease HIII [Granulicatella elegans ATCC 700633]
          Length = 304

 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 31/176 (17%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS-- 77
           W V G DEVG G+  GP+ VA   +  N I      G+ DSK ++  + +E+  KI    
Sbjct: 89  WGVIGSDEVGTGSYFGPLTVACAFVPENLIKELQILGVKDSKILTDSQIQEIVPKIKELV 148

Query: 78  -SAIISISSASHQYIDKHN--------IHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
              ++++    +  + +          +H   +  +Y  + N  ++ ++ LID    P +
Sbjct: 149 PYKLLTLWPEKYNEVQQTKNLNEMKALLHNQAIKRLYQQI-NADLL-QAVLIDEFCSPSN 206

Query: 129 L---------PCQAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173
                     P +A      KG+S  +++AAAS+IA   RD  +        +YG+
Sbjct: 207 YYRYLGDQSAPLKAITYFKTKGESHHIAVAAASMIA---RDAFLEGLKTLSKEYGY 259


>gi|167524000|ref|XP_001746336.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775098|gb|EDQ88723.1| predicted protein [Monosiga brevicollis MX1]
          Length = 596

 Score = 42.4 bits (98), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 86/218 (39%), Gaps = 64/218 (29%)

Query: 26  VAGIDEVGRGALAGPVVVAAII--LDPNN--IPFGINDSKKISHKKREELYEKITSSA-- 79
           V G+DE GRG + GP+V A     L  N      G  DSK++S  KR+EL++ I  +A  
Sbjct: 301 VLGVDEAGRGPVLGPMVYAVAFAPLSENARMKKLGFADSKQLSEAKRDELFKVIKENADW 360

Query: 80  ------IISISSASHQYID--KHNI----HKATLDAI--YHA------------------ 107
                 +++ S  S   +   KHN+    H++T+D +   HA                  
Sbjct: 361 MGWKVHMLAASDISAGMLSRTKHNLNAQAHESTVDLVKRLHAQGVQIKEDLTYRLRLNHR 420

Query: 108 ------------------------VENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
                                   + N++++  S L     +  DL      +   D   
Sbjct: 421 QLYVDTVGKAHIYQQQLENWLRPTIPNIKIVVESKLCVTHRV-SDLCVLILDIANADVTY 479

Query: 144 LSIAAASIIAKVTRDRLMRIA-HKKYPDYGFDSHVGYP 180
             ++AASI AKVTRD ++    H +  +   D   GYP
Sbjct: 480 PIVSAASICAKVTRDAVLTYWRHPEQREIDNDFGCGYP 517


>gi|169596915|ref|XP_001791881.1| hypothetical protein SNOG_01231 [Phaeosphaeria nodorum SN15]
 gi|111069760|gb|EAT90880.1| hypothetical protein SNOG_01231 [Phaeosphaeria nodorum SN15]
          Length = 345

 Score = 42.4 bits (98), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 74/176 (42%), Gaps = 34/176 (19%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-------NDSKKISHKKREELYEKITSS 78
           V G+DE GRG + GP+V A   L P  +   +       +DSKK++ + R +L  +I + 
Sbjct: 60  VLGVDEAGRGPVLGPMVYALFYL-PVELHHSLLADTHHFDDSKKLTPEVRSDLMRRICTP 118

Query: 79  AI-------ISISSASHQYIDKH-------NIHKATLDAIYHAVENL---QVIPRSALID 121
                     +  S S Q I  H       N++   +DA    ++ +    V      ID
Sbjct: 119 GTDLYEAGGWATRSLSAQDISAHMLSPNVYNLNAQAMDATIDLIKEVLAKGVNVTEIYID 178

Query: 122 GRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
               PE          P     V K  DS+   ++AAS+ AKVTRD  + + +  Y
Sbjct: 179 TIGRPETYQRKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRDAAINVCYAPY 234


>gi|326693332|ref|ZP_08230337.1| ribonuclease HIII [Leuconostoc argentinum KCTC 3773]
          Length = 313

 Score = 42.4 bits (98), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 31/172 (18%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS- 78
           W V G DEVG GA  GP+  AA+ +  + + +    GI DSK ++  K  ++  +I ++ 
Sbjct: 98  WSVLGSDEVGAGAYFGPLTTAAVYVPKDQLAWVRQLGIADSKTLTDAKMRQIAPEIIANL 157

Query: 79  ---AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135
               +  +    +Q    +N+++  + AI H     +V+ + A     +I  D   QA  
Sbjct: 158 PHHVVNLMPEKYNQMQPTNNVNQ--MKAISHNFVLGKVLAKIAPTTPDAILIDQFAQAST 215

Query: 136 --------------------VIKGDSISLSIAAASIIAKVTR-DRLMRIAHK 166
                                 KG+   LS+AAASI+A+V   D + +++ +
Sbjct: 216 YFKYLTQAQQSPIIKNNVHFTTKGEQYHLSVAAASILARVVELDSMAKLSEE 267


>gi|238809644|dbj|BAH69434.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 250

 Score = 42.4 bits (98), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 72/176 (40%), Gaps = 35/176 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREEL---YEKITSSAI 80
           G+DEVG G   GP+  AA+ +  + I      G+ DSKK+S K+ + +    +KI   AI
Sbjct: 20  GVDEVGVGDYFGPLCCAAVFIPQDKIQEVIDLGVKDSKKLSDKQIKMMAYKLKKIVKYAI 79

Query: 81  ISISSASHQYIDKH---NIHKAT--LDAIYHAVENLQVIPRSALIDGRSIPEDLP----- 130
             +S   +  ++K    N  K    L AI    E +  +     ID  S    +      
Sbjct: 80  HHLSPKGYNTLNKTYNGNFLKMFTHLSAISSLQEKIGAVDY-VFIDQYSTKSSIERYYTD 138

Query: 131 ------CQAFAVIKGD--------SISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172
                    F  I+GD        SISL +A ASIIA   RD  +    K    Y 
Sbjct: 139 LVKLNNWADFNQIQGDILLAYKAESISLEVACASIIA---RDYFLYFMQKMNEQYN 191


>gi|293366878|ref|ZP_06613554.1| ribonuclease HIII [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291319179|gb|EFE59549.1| ribonuclease HIII [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329729960|gb|EGG66351.1| ribonuclease HIII [Staphylococcus epidermidis VCU144]
 gi|329734428|gb|EGG70741.1| ribonuclease HIII [Staphylococcus epidermidis VCU045]
 gi|329736208|gb|EGG72480.1| ribonuclease HIII [Staphylococcus epidermidis VCU028]
          Length = 308

 Score = 42.4 bits (98), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 24/157 (15%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
           N +   G DE G G   GP+ V A  +  ++I      G++DSKK++  K  +L E++ +
Sbjct: 86  NRFHCIGSDEAGSGDYFGPLTVCAAYVSQSHIKILKELGVDDSKKLNDTKIVDLAEQLIT 145

Query: 78  ---SAIISISSASHQYIDKHNIHKATLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE 127
               +++++ +  +         +  + A+ H  A++N LQ I +  L    ID  +  E
Sbjct: 146 FIPHSLLTLDNVKYNERQSIGWSQVKMKAVLHNEAIKNVLQKIEQDQLDYIVIDQFAKRE 205

Query: 128 DLPCQAFAVI----------KGDSISLSIAAASIIAK 154
                A + +          KG+S SL+IAAASII++
Sbjct: 206 VYQHYALSALPFPDKTKFETKGESKSLAIAAASIISR 242


>gi|195456019|ref|XP_002074967.1| GK22869 [Drosophila willistoni]
 gi|194171052|gb|EDW85953.1| GK22869 [Drosophila willistoni]
          Length = 336

 Score = 42.4 bits (98), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 39/188 (20%)

Query: 28  GIDEVGRGALAGPVV--VAAIILDPNN--IPFGINDSKKISHKKREELYEKITS------ 77
           G+DE GRG + GP+V  ++   L+     I  G  DSK+++ +KR+ ++ ++ +      
Sbjct: 63  GVDEAGRGPVLGPMVYGISYCPLESKQALIDLGCADSKQLTEEKRDIIFNELNTLDYATE 122

Query: 78  -----SAIIS--ISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127
                  IIS  + S+S     K ++++ ++D+    ++   +  V      +D    PE
Sbjct: 123 CIGWAVEIISPNVISSSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVQIAEVYVDTVGPPE 182

Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP------DYG 172
                     P     V  K DS    ++AASI AKVTRD  +++   K+P      D  
Sbjct: 183 KYQEKLLRRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--KFPEGLVIKDNA 240

Query: 173 FDSHVGYP 180
           F S  GYP
Sbjct: 241 FGS--GYP 246


>gi|308189676|ref|YP_003922607.1| ribonuclease H [Mycoplasma fermentans JER]
 gi|307624418|gb|ADN68723.1| ribonuclease H [Mycoplasma fermentans JER]
          Length = 249

 Score = 42.4 bits (98), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 72/176 (40%), Gaps = 35/176 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREEL---YEKITSSAI 80
           G+DEVG G   GP+  AA+ +  + I      G+ DSKK+S K+ + +    +KI   AI
Sbjct: 19  GVDEVGVGDYFGPLCCAAVFIPQDKIQEVIDLGVKDSKKLSDKQIKMMAYKLKKIVKYAI 78

Query: 81  ISISSASHQYIDKH---NIHKAT--LDAIYHAVENLQVIPRSALIDGRSIPEDLP----- 130
             +S   +  ++K    N  K    L AI    E +  +     ID  S    +      
Sbjct: 79  HHLSPKGYNTLNKTYNGNFLKMFTHLSAISSLQEKIGAVDY-VFIDQYSTKSSIERYYTD 137

Query: 131 ------CQAFAVIKGD--------SISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172
                    F  I+GD        SISL +A ASIIA   RD  +    K    Y 
Sbjct: 138 LVKLNNWADFNQIQGDILLAYKAESISLEVACASIIA---RDYFLYFMQKMNEQYN 190


>gi|293364827|ref|ZP_06611544.1| ribonuclease HIII [Streptococcus oralis ATCC 35037]
 gi|307703076|ref|ZP_07640023.1| ribonuclease HIII [Streptococcus oralis ATCC 35037]
 gi|291316277|gb|EFE56713.1| ribonuclease HIII [Streptococcus oralis ATCC 35037]
 gi|307623469|gb|EFO02459.1| ribonuclease HIII [Streptococcus oralis ATCC 35037]
          Length = 293

 Score = 42.4 bits (98), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 25/155 (16%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
           +P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  FPMIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHNIHKATL----DAIYHAVENLQVIPRSALIDGRSIPED-- 128
           +  A++   S  ++ I +++N     +     AI+  ++   V P   +IDG + P++  
Sbjct: 138 SHQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQK-GVQPEKIVIDGFTSPKNYD 196

Query: 129 ---------LPCQAFAVIKGDSISLSIAAASIIAK 154
                     P +     K +   L++A +SIIA+
Sbjct: 197 KYLAQEANRFPNKITLEEKAEGKYLAVAVSSIIAR 231


>gi|319776859|ref|YP_004136510.1| ribonuclease [Mycoplasma fermentans M64]
 gi|318037934|gb|ADV34133.1| Ribonuclease [Mycoplasma fermentans M64]
          Length = 249

 Score = 42.4 bits (98), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 72/176 (40%), Gaps = 35/176 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREEL---YEKITSSAI 80
           G+DEVG G   GP+  AA+ +  + I      G+ DSKK+S K+ + +    +KI   AI
Sbjct: 19  GVDEVGVGDYFGPLCCAAVFIPQDKIQEVIDLGVKDSKKLSDKQIKMMAYKLKKIVKYAI 78

Query: 81  ISISSASHQYIDKH---NIHKAT--LDAIYHAVENLQVIPRSALIDGRSIPEDLP----- 130
             +S   +  ++K    N  K    L AI    E +  +     ID  S    +      
Sbjct: 79  HHLSPKGYNTLNKTYNGNFLKMFTHLSAISSLQEKIGAVDY-VFIDQYSTKSSIERYYTD 137

Query: 131 ------CQAFAVIKGD--------SISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172
                    F  I+GD        SISL +A ASIIA   RD  +    K    Y 
Sbjct: 138 LVKLNNWADFNQIQGDILLAYKAESISLEVACASIIA---RDYFLYFMQKMNEQYN 190


>gi|157136849|ref|XP_001656938.1| ribonuclease hi large subunit [Aedes aegypti]
 gi|108880967|gb|EAT45192.1| ribonuclease hi large subunit [Aedes aegypti]
          Length = 335

 Score = 42.0 bits (97), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 32/186 (17%)

Query: 26  VAGIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS--A 79
           V G+DE GRG + GP+V  +A   +    +    G  DSK+++ +KR+ +++++     A
Sbjct: 61  VLGVDEAGRGPVLGPMVYGIAFCPITKKEVLKKLGFADSKQLTEEKRDVIFDEMNQKDYA 120

Query: 80  IISISSA-----------SHQYIDKHNIHKATLDA----IYHAVENLQVIPRSALIDGRS 124
           + SI  A           S     K ++++ ++D+    I  A+E    I     +D   
Sbjct: 121 VESIGWAVEVIAPNDICMSMLRRTKRSLNEVSMDSAIGLIRKAIEAGVNIA-EVYVDTVG 179

Query: 125 IPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRI-AHKKYPDYGFD 174
            PE    +   +          K DS    ++AASI AKV+RD  +++ + ++  + G +
Sbjct: 180 PPEKYQAKLKQIFPKFKITVAKKADSTYPIVSAASICAKVSRDHALKVWSFREGLEPGIN 239

Query: 175 SHVGYP 180
              GYP
Sbjct: 240 FGSGYP 245


>gi|297703733|ref|XP_002828781.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease H2 subunit A-like
           [Pongo abelii]
          Length = 313

 Score = 42.0 bits (97), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 77/200 (38%), Gaps = 49/200 (24%)

Query: 26  VAGIDEVGRGALAGPVV------------VAAIILDP-----NNIPFGINDSKKISHKKR 68
           V G+DE GRG L GP +            V AI   P     +     + DSK +   +R
Sbjct: 30  VLGVDEAGRGPLIGPRLPENXHPSSPGPMVYAICYCPLSRLADLEALKVADSKTLLESER 89

Query: 69  EELYEK------------ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116
           E L+ K            + S  +IS S       + +++   T   +     +  V   
Sbjct: 90  ERLFAKMEDRDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVT 149

Query: 117 SALIDGRSIPEDLPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLM------ 161
              +D   +PE       Q+F  I      K D++   ++AASI AKV RD+ +      
Sbjct: 150 QVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFV 209

Query: 162 -RIAHKKYPDYGFDSHVGYP 180
            ++    Y DYG     GYP
Sbjct: 210 EKLQDSXYTDYG----SGYP 225


>gi|169335211|ref|ZP_02862404.1| hypothetical protein ANASTE_01619 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257949|gb|EDS71915.1| hypothetical protein ANASTE_01619 [Anaerofustis stercorihominis DSM
           17244]
          Length = 304

 Score = 42.0 bits (97), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 103/211 (48%), Gaps = 35/211 (16%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREEL---YEKITS 77
           P+ G DEVG+G    P++V ++ L+ N        G+ DSK +S  +  +L    +K+T+
Sbjct: 99  PLLGSDEVGKGDFYAPIIVGSVYLEKNEYDILKTLGVRDSKDLSDDRIIKLASEIKKVTN 158

Query: 78  S-AIISISSASHQYIDKHNIHKATLDAI--YHAVENLQVIP-----RSALIDG------- 122
           + +I+ I  + +  + K       ++AI  +  V N++ +      + AL+D        
Sbjct: 159 NYSILRIGQSKYNELYK---KIGNINAILAWAHVTNIKNVYKKQHFKKALVDKFGREEQI 215

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT- 181
           R+  ++L  +     K +  ++++AAASI+A   RD L+         Y FD  +G  + 
Sbjct: 216 RNGLKELNLEMIFKPKAEQ-NIAVAAASILA---RDALLTTIKNMNKHYDFDFPLGANSI 271

Query: 182 --AKHQQVIKEKGPSCIH---RLTFRPLRNL 207
              K ++ +K+ G   ++   ++ F+ ++N+
Sbjct: 272 VITKGKEFVKKFGEEELNNVCKMHFKTVQNI 302


>gi|241957291|ref|XP_002421365.1| ribonuclease large subunit, putative [Candida dubliniensis CD36]
 gi|223644709|emb|CAX40699.1| ribonuclease large subunit, putative [Candida dubliniensis CD36]
          Length = 366

 Score = 42.0 bits (97), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 85/212 (40%), Gaps = 45/212 (21%)

Query: 11  HFELEAMVREKNMWP-VAGIDEVGRGALAGPVVVA-AIILDPNNI----PFGINDSKKIS 64
           H E+   V +    P V G+DE GRG + G +V   A  L+  +      +G  DSK ++
Sbjct: 75  HSEIPQNVLQNETEPIVLGVDEAGRGPVLGAMVYGIAYSLESFSSKLQKEYGFADSKVLT 134

Query: 65  HKKREELYEKI---------------TSSAIISISSASHQYID-------KHNIHKATLD 102
             KREEL+++I               T+     ISS   Q ++           H  T+D
Sbjct: 135 DVKREELFKQIEDPEHELHKHIGWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTID 194

Query: 103 AIYHAVENLQVIPRSALIDG------------RSIPEDLPCQAFAVIKGDSISLSIAAAS 150
            I   +     I +   +D             R  PE          K DSI   ++ AS
Sbjct: 195 LIKQVLAKGVKISK-IFVDTVGPPVTYQAKLKRFFPE---IDVTVTKKADSIYPIVSTAS 250

Query: 151 IIAKVTRDRLMRIAHKKYPDY-GFDSHVGYPT 181
           ++AKVTRD  ++  ++  P   G     GYP+
Sbjct: 251 VVAKVTRDTNIKFYNENLPLLQGQKLGSGYPS 282


>gi|296422347|ref|XP_002840722.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636945|emb|CAZ84913.1| unnamed protein product [Tuber melanosporum]
          Length = 336

 Score = 42.0 bits (97), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 42/171 (24%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKIT----- 76
           + G+DE GRG + GP+V A      ++ P       +DSKK++H  R  L + +T     
Sbjct: 64  ILGVDEAGRGPVLGPMVYAVAYCLKSDNPMLREHKFDDSKKLTHSLRTHLLQTLTTPDTT 123

Query: 77  -----------------SSAIISISSASHQYIDKHNIHKATLDA---IYHAVENLQVIPR 116
                            SS ++  +++S  Y    N++    DA   +  AV +  V  R
Sbjct: 124 LHRNLGWSTISLSPRDISSGMLRSTTSSSTY----NLNAQAFDATTTLITAVLSSGVNIR 179

Query: 117 SALIDG--------RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRD 158
              +D           + +  P  A  V  K DSI   ++AAS+ AKVTRD
Sbjct: 180 EIYVDTVGTASTYQSRLQKLFPHIAVTVSKKADSIYPIVSAASVCAKVTRD 230


>gi|295658160|ref|XP_002789642.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb01]
 gi|226283127|gb|EEH38693.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb01]
          Length = 343

 Score = 42.0 bits (97), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 72/176 (40%), Gaps = 35/176 (19%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG------INDSKKISHKKREELYE------ 73
           V G+DE GRG + GP++ +A  L  +            +DSK ++   R  L        
Sbjct: 58  VLGVDEAGRGPVLGPMIYSAFYLPLSLHHSLLAKEHHFDDSKVLTPAVRTNLMRLLCTPD 117

Query: 74  -----------KITSSAIIS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
                      K+ S+  IS   + S +  Y        AT++ I   VE + V  +   
Sbjct: 118 HSLNTSCGWGVKVLSARDISTGMLRSGTGNYNLNAQAMDATIELIICIVEKMGVNVKEVY 177

Query: 120 IDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK 166
           ID    PE          P     V K  DS+  S++AAS+ AKVTRD  + + ++
Sbjct: 178 IDTIGNPETYQKKLKRIFPALKITVTKKADSLYPSVSAASVCAKVTRDVALELCYE 233


>gi|326483287|gb|EGE07297.1| ribonuclease HI large subunit [Trichophyton equinum CBS 127.97]
          Length = 323

 Score = 42.0 bits (97), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 74/180 (41%), Gaps = 38/180 (21%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-------NDSKKISHKKREELYE----- 73
           V GIDE GRG + GP+V +A  L P ++   +       +DSK ++ + R  L       
Sbjct: 68  VLGIDEAGRGPVLGPMVYSAFYL-PIHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLCTK 126

Query: 74  ------------KITSSAIISISSASHQYIDKHNIHKATLDA----IYHAVENLQVIPRS 117
                       K+ S+  IS           +N++   LDA    I   VE  ++  + 
Sbjct: 127 GHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNSQALDATIEIIRGVVETQRIDVKE 186

Query: 118 ALIDGRSIPEDLPCQAFAVIKG---------DSISLSIAAASIIAKVTRDRLMRIAHKKY 168
             +D    PE    +   V  G         DS+   ++AAS+ AKVTRD  +   ++ +
Sbjct: 187 VYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESW 246


>gi|326472233|gb|EGD96242.1| ribonuclease H2 subunit A [Trichophyton tonsurans CBS 112818]
          Length = 361

 Score = 42.0 bits (97), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 74/180 (41%), Gaps = 38/180 (21%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-------NDSKKISHKKREELYE----- 73
           V GIDE GRG + GP+V +A  L P ++   +       +DSK ++ + R  L       
Sbjct: 68  VLGIDEAGRGPVLGPMVYSAFYL-PIHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLCTK 126

Query: 74  ------------KITSSAIISISSASHQYIDKHNIHKATLDA----IYHAVENLQVIPRS 117
                       K+ S+  IS           +N++   LDA    I   VE  ++  + 
Sbjct: 127 GHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNSQALDATIEIIRGVVETQRIDVKE 186

Query: 118 ALIDGRSIPEDLPCQAFAVIKG---------DSISLSIAAASIIAKVTRDRLMRIAHKKY 168
             +D    PE    +   V  G         DS+   ++AAS+ AKVTRD  +   ++ +
Sbjct: 187 VYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESW 246


>gi|85057383|ref|YP_456299.1| ribonuclease HIII [Aster yellows witches'-broom phytoplasma AYWB]
 gi|84789488|gb|ABC65220.1| ribonuclease HIII [Aster yellows witches'-broom phytoplasma AYWB]
          Length = 330

 Score = 41.6 bits (96), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 27/157 (17%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN-----DSKKISHKKREE----LYEK 74
            P  G DEVG G + GPVVV  + L   NI F  N     +SKKIS +K       + ++
Sbjct: 117 LPSIGSDEVGTGDVFGPVVVCCVYLTAKNIAFLQNLGIIAESKKISDEKIINIAPLIMKE 176

Query: 75  ITSSAIISISSASHQYIDKHNIHK--------ATLDAIYHAVENLQVI------PR---S 117
           +  S+ I +    +Q I + N++K        A    ++ A  N+ VI      P+   +
Sbjct: 177 VIYSSKIMMPLEYNQIIKQCNLNKIKALMHNEAIKQTVFKAPPNVPVILDQFCFPKNYFN 236

Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
            L D +   E      F   K DS   S+A AS+IA+
Sbjct: 237 YLQDQKDQNEVYTNIIFET-KADSSYFSVAVASVIAR 272


>gi|115385935|ref|XP_001209514.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114187961|gb|EAU29661.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 339

 Score = 41.6 bits (96), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 37/178 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKR---------- 68
           V G+DE GRG + GP+V +A  L P+++        +  +DSK ++   R          
Sbjct: 59  VLGVDEAGRGPVLGPMVYSAFYL-PHDLHHSLLAQKYSFDDSKVLTPAVRLNLMRTLCTP 117

Query: 69  -EELYE------KITSSAIIS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118
              L+E      K+ ++  IS   +  A+  Y        AT++ I   VE  +V  R  
Sbjct: 118 GTPLFESCGWATKLLTAQDISSGMMRPAAAAYNLNAQAMDATIEIIRGIVEERKVNVREV 177

Query: 119 LIDGRSIPED--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
            ID    P           P     V  K DS+   ++AAS+ AKVTRD  + + +++
Sbjct: 178 YIDTIGNPASYQQKLERIFPTLKITVAKKADSLYPCVSAASVAAKVTRDIALELCYEE 235


>gi|50551451|ref|XP_503199.1| YALI0D23661p [Yarrowia lipolytica]
 gi|49649067|emb|CAG81399.1| YALI0D23661p [Yarrowia lipolytica]
          Length = 315

 Score = 41.6 bits (96), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 78/190 (41%), Gaps = 39/190 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAI-----ILDPNNIPFGINDSKKISHKKREELYEKI----- 75
           + G+DE GRG + G +V           D      G  DSK ++ +KR  L  +I     
Sbjct: 43  ILGVDEAGRGPVLGSMVYGLAYCTKEFADEELSKTGFADSKTLTAEKRSALMREICCDET 102

Query: 76  ---------TSSAIISISSASHQYIDK--HNI----HKATLDAIYHAVENLQVIPRSALI 120
                    TS     ISSA  + + +  +N+    H  T+ A+   V +  V+   A I
Sbjct: 103 LVEHLGWCTTSMTAQDISSAMLRPMSRGVYNLNDQAHDTTM-ALIQGVLDRGVLLTEAYI 161

Query: 121 DGRSIP--------EDLPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171
           D    P        +  P   F V K  DS+   ++AASI AKVTRD  ++        +
Sbjct: 162 DTVGPPASYTAKLSKQFPHIKFTVTKKADSLFPIVSAASICAKVTRDMDLKSQDLSEGTW 221

Query: 172 GFDSHVGYPT 181
           G     GYP+
Sbjct: 222 G----SGYPS 227


>gi|157693280|ref|YP_001487742.1| ribonuclease HIII [Bacillus pumilus SAFR-032]
 gi|166991072|sp|A8FG15|RNH3_BACP2 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|157682038|gb|ABV63182.1| ribonuclease H [Bacillus pumilus SAFR-032]
          Length = 307

 Score = 41.6 bits (96), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 40/207 (19%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           V G DEVG G   GP+ V A  +D +++      G+ DSK +   +     ++L + I  
Sbjct: 95  VIGSDEVGTGDYFGPITVCAAYVDASHLALMKELGVKDSKGLKDPQIINIAKDLIKTIPF 154

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH------AVENLQ-VIPRSALID--------- 121
           S ++ + +  +  + +  + +  + A+ H      A+E L    P + LID         
Sbjct: 155 SLLV-LRNEKYNAMQEKGMSQGKMKALLHNQVITSALEKLDGKQPEAILIDQFAEPGIYF 213

Query: 122 ----GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK----VTRDRLMRIAHKKYPDYGF 173
               G+ I  +   + +   K + I LS+AAASIIA+    +  D+L   A  + P  G 
Sbjct: 214 KHLAGKKIIRE---RTYFSTKAEGIHLSVAAASIIARYAFLIEMDKLSEAAGFEIPK-GA 269

Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLT 200
             HV    AK   +IK  G   + + T
Sbjct: 270 GPHVDKAAAK---LIKLHGEEALRQFT 293


>gi|213857937|ref|ZP_03384908.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
          Typhi str. M223]
          Length = 44

 Score = 41.6 bits (96), Expect = 0.069,   Method: Composition-based stats.
 Identities = 19/25 (76%), Positives = 21/25 (84%)

Query: 26 VAGIDEVGRGALAGPVVVAAIILDP 50
          VAG+DEVGRG L G VV AA+ILDP
Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDP 36


>gi|167043102|gb|ABZ07812.1| putative uncharacterized protein family UPF0102 [uncultured marine
           microorganism HF4000_ANIW141I9]
          Length = 172

 Score = 41.6 bits (96), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 25/38 (65%)

Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           +P+YGF  H GY T+ H + + +   S IHR +F+P++
Sbjct: 8   FPEYGFAKHKGYGTSFHMEQLNKNKASLIHRKSFKPVK 45


>gi|319651783|ref|ZP_08005909.1| ribonuclease [Bacillus sp. 2_A_57_CT2]
 gi|317396602|gb|EFV77314.1| ribonuclease [Bacillus sp. 2_A_57_CT2]
          Length = 312

 Score = 41.6 bits (96), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 25/154 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---S 78
           V G DEVG G   GP+ V A  +  + IP     G+ DSK +  +K  E+ ++I      
Sbjct: 94  VIGSDEVGTGDYFGPITVVAAYVKKDQIPLLKELGVKDSKNLGDEKIIEIAKQIKDIVPY 153

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI-------PRSALIDGRSIPE---- 127
           +++++ +  +  + +  + +  + A+ H      V+       P + LID  +  E    
Sbjct: 154 SLLTLHNEKYNKLQQSGMSQGKIKALLHNQAIGHVLGKIAPEKPEAILIDQFAKEEVYFN 213

Query: 128 DLPCQ-------AFAVIKGDSISLSIAAASIIAK 154
            L  Q        F   K + I L++AAASI+A+
Sbjct: 214 YLKNQQTIQRERVFFSTKAEGIHLAVAAASILAR 247


>gi|306826719|ref|ZP_07460021.1| ribonuclease HIII [Streptococcus pyogenes ATCC 10782]
 gi|304431008|gb|EFM34015.1| ribonuclease HIII [Streptococcus pyogenes ATCC 10782]
          Length = 300

 Score = 41.6 bits (96), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 4/51 (7%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREEL 71
           P+ G DEVG G+  G + V A  +DP +  F    G++DSKK+S K  +++
Sbjct: 84  PIVGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQI 134


>gi|149183057|ref|ZP_01861510.1| ribonuclease HIII [Bacillus sp. SG-1]
 gi|148849238|gb|EDL63435.1| ribonuclease HIII [Bacillus sp. SG-1]
          Length = 309

 Score = 41.6 bits (96), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 91/203 (44%), Gaps = 35/203 (17%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS---SAI 80
           G DEVG G   GP+ V A  +    IP     G+ DSK ++ +K   + + + S    ++
Sbjct: 96  GSDEVGTGDFFGPITVVAAYVKKEQIPLLKELGVKDSKNLNDEKIIAIAKNLLSVIPYSL 155

Query: 81  ISISSASHQYIDKHNIHKATLDAIYH--AVENL-QVI----PRSALIDGRSIPEDLPCQA 133
           +   +  +  + +  + +  + A+ H  A+ NL Q I    P + LID +   E+   + 
Sbjct: 156 LICHNDKYNALQEKGMSQGKIKALLHNRAILNLLQKIAPEKPEAVLID-QFAEENTYYKY 214

Query: 134 FA------------VIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDSHV 177
            A              KG+SI LS+AAASI+A+       D+L  +A    P  G    V
Sbjct: 215 LAGQKEIHRENVLFSTKGESIHLSVAAASILARYAFVKEMDKLSALAGFPIPK-GAGKQV 273

Query: 178 GYPTAKHQQVIKEKGPSCIHRLT 200
               AK   +I++ G   + ++T
Sbjct: 274 DIAGAK---IIRKSGADELKKIT 293


>gi|332030069|gb|EGI69894.1| Ribonuclease H2 subunit A [Acromyrmex echinatior]
          Length = 332

 Score = 41.6 bits (96), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 90/207 (43%), Gaps = 44/207 (21%)

Query: 9   RPHF-ELEAMVREKNMWPVA-GIDEVGRGALAGPVV--VAAIILDPNN--IPFGINDSKK 62
           R HF E+  + ++K   P   G+DE GRG + GP+V  ++   L  N   +  G  DSK 
Sbjct: 47  RIHFSEVSQICKDK---PCQLGVDEAGRGPVLGPMVYGISYAPLSQNQLLVDLGCADSKS 103

Query: 63  ISHKKREELYEKIT---SSAIISISSASHQYIDKHNIHKAT------------LDAIYHA 107
           ++ KKR+E+++ I     S   +I   S   I  +N+++ T             + I  A
Sbjct: 104 LTEKKRDEIFDDICKHKDSIGWAIEVISPNVI-ANNMYRRTKISLNEISMISATNLIREA 162

Query: 108 VENLQVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRD 158
           +E   V      +D    PE    +  ++          K D+    ++AASI AKV+RD
Sbjct: 163 IE-AGVNVAEIYVDTVGKPESYQTRLKSIFPSIKIIVAKKADATYPIVSAASICAKVSRD 221

Query: 159 RLMRIAHKKYPD-----YGFDSHVGYP 180
             +R    +  D     YG     GYP
Sbjct: 222 HAIRAWRFREDDCIETEYG----SGYP 244


>gi|172058184|ref|YP_001814644.1| ribonuclease HIII [Exiguobacterium sibiricum 255-15]
 gi|229564305|sp|B1YJY9|RNH3_EXIS2 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|171990705|gb|ACB61627.1| ribonuclease HIII [Exiguobacterium sibiricum 255-15]
          Length = 306

 Score = 41.2 bits (95), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64
           W V G DEVG+G   GP+VV A  +D   I      G+ DSK +S
Sbjct: 87  WSVVGSDEVGKGDFFGPLVVVAAYVDKTKIELVRELGVRDSKNVS 131


>gi|291229986|ref|XP_002734939.1| PREDICTED: RNase H family member (rnh-2)-like [Saccoglossus
           kowalevskii]
          Length = 303

 Score = 41.2 bits (95), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 28/170 (16%)

Query: 28  GIDEVGRGALAGPVVVA----AIILDPNNIPFGINDSKKISHKKREELYEKI-------- 75
           GIDE GRG + GP+V       I  +      G  DSK +S ++REEL+ KI        
Sbjct: 34  GIDEAGRGPVLGPMVYGICYCPISKNEQLAEMGFADSKTLSEEQREELFTKIYEANQVLG 93

Query: 76  -----TSSAIISISSASHQYIDKHNIHK-ATLDAIYHAVE---NLQVIPRSALIDGRS-- 124
                 S  IIS S         + + K + +  +   +E   N++ +    + D     
Sbjct: 94  YKMEVLSPNIISNSMFRRTKCSLNTVSKDSAIKLLRLTIEEGANIKEVYVDTVGDASKYQ 153

Query: 125 --IPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171
             + E  P     V  K D+    ++AASI AKV RDR ++    ++P++
Sbjct: 154 AYLKELFPDLEITVTPKADAKFPIVSAASICAKVCRDRAVK--SWQFPEF 201


>gi|257456663|ref|ZP_05621856.1| ribonuclease HII [Treponema vincentii ATCC 35580]
 gi|257445930|gb|EEV20980.1| ribonuclease HII [Treponema vincentii ATCC 35580]
          Length = 42

 Score = 41.2 bits (95), Expect = 0.082,   Method: Composition-based stats.
 Identities = 21/35 (60%), Positives = 25/35 (71%)

Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62
          GIDE GRGALAGPV  AA+IL  +     ++DSKK
Sbjct: 5  GIDEAGRGALAGPVYAAAVILPASFDVSVLDDSKK 39


>gi|195032708|ref|XP_001988545.1| GH10519 [Drosophila grimshawi]
 gi|193904545|gb|EDW03412.1| GH10519 [Drosophila grimshawi]
          Length = 334

 Score = 41.2 bits (95), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 41/189 (21%)

Query: 28  GIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITS------ 77
           G+DE GRG + GP+V  ++   L+  ++    G  DSK+++ +KR+ ++  + +      
Sbjct: 61  GVDEAGRGPVLGPMVYGISYCPLESKSVLVELGCADSKQLTEEKRDIIFNDLNTLEYANS 120

Query: 78  -----SAIIS--ISSASHQYIDKHNIHKATLDA----IYHAVENLQVIPRSALIDGRSIP 126
                  IIS  + S+S     K ++++ ++D+    I HA+ +  V      +D    P
Sbjct: 121 CIGWAVEIISPNVISSSMYRRTKCSLNEISMDSAMGLIQHAI-DAGVNIAEVYVDTVGPP 179

Query: 127 ED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHKKYP------DY 171
           E          P     V K  DS    ++AASI AKVTRD  +++   ++P      D 
Sbjct: 180 EKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--QFPEGLLIKDN 237

Query: 172 GFDSHVGYP 180
            F S  GYP
Sbjct: 238 AFGS--GYP 244


>gi|269115105|ref|YP_003302868.1| ribonuclease HII [Mycoplasma hominis]
 gi|268322730|emb|CAX37465.1| Ribonuclease HII [Mycoplasma hominis ATCC 23114]
          Length = 232

 Score = 41.2 bits (95), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 84/196 (42%), Gaps = 48/196 (24%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT 76
           KN+  + G+DE G G    PV+  A  +  +NI      G+ DSKK+S K+  E++ +I 
Sbjct: 3   KNLDELIGVDETGVGDYFSPVISVACYIPKDNIEKLKQIGVKDSKKLSDKRIIEIFNQIE 62

Query: 77  ---------------------------------SSAIISISSASHQYIDKH-NIHKATLD 102
                                            S++I  ++   +Q ID   + +  +L+
Sbjct: 63  NLVYYQKTCLSQSGYNKLIDAGINNNEIKTLIHSNSINILTKKLNQNIDVFIDQYTTSLE 122

Query: 103 AIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162
            +    + LQ I   + +D +    ++  +     KG+  SL++AAASII+   R  L+ 
Sbjct: 123 VLQKHFKKLQAI---SWLDFKKPQNEIIIET----KGEEKSLAVAAASIIS---RKFLID 172

Query: 163 IAHKKYPDYGFDSHVG 178
              ++   Y F+  +G
Sbjct: 173 WMQQQNKKYNFEFKLG 188


>gi|37362282|gb|AAQ91269.1| ribonuclease H2, large subunit [Danio rerio]
 gi|220678488|emb|CAP09311.2| novel protein similar to ribonuclease H2, large subunit (RNASEH2A,
           zgc:56307) [Danio rerio]
          Length = 307

 Score = 41.2 bits (95), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 38/186 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIIL------DPNNIPFGINDSKKISHKKREELYEKITSS--- 78
           GIDE GRG + GP+V            D  N+   + DSK ++  +RE L+ K+  +   
Sbjct: 32  GIDEAGRGPVLGPMVYGICFCPVSRKEDLKNLK--VADSKTLTEAERENLFVKLDEAKSF 89

Query: 79  -----AIIS---ISSASHQYIDKHNI----HKATLDAIYHAVENLQVIPRSALIDGRSIP 126
                 I+S   IS++  Q   K+N+    H A +  + +A+++  V  +   +D     
Sbjct: 90  VGWALQILSPNMISTSMLQRA-KYNLNALSHDAAIGLVQYALDS-GVQLKEVFVDTVGPA 147

Query: 127 E---DLPCQAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG---FD 174
           E   D   Q F  +      K DS+   ++AASI AKV RD  ++ + K   D G    D
Sbjct: 148 EKYQDKLSQRFPGVEVTVRPKADSLFPIVSAASICAKVARDHAVK-SWKFAEDLGDVDTD 206

Query: 175 SHVGYP 180
              GYP
Sbjct: 207 YGSGYP 212


>gi|302683973|ref|XP_003031667.1| hypothetical protein SCHCODRAFT_55770 [Schizophyllum commune H4-8]
 gi|300105360|gb|EFI96764.1| hypothetical protein SCHCODRAFT_55770 [Schizophyllum commune H4-8]
          Length = 286

 Score = 41.2 bits (95), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 31/182 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-- 79
           + G+DE GRG + GP+V     +           G  DSK +   +RE L E + S+   
Sbjct: 31  ILGVDEAGRGPVLGPLVYGVAYVAETGKERMEAMGFADSKTLDAARREALLETLCSAPDV 90

Query: 80  ------IISISSASHQYIDK--HNIHKATLDAIYHAVENL--QVIPRSA-LIDG------ 122
                 +IS  + S   + +   N+++ + DA    +  +  + I  SA  +D       
Sbjct: 91  LGWAVRVISPQALSSGMLRRPPTNLNEQSRDATVMLIRGVLARGIQLSAVFVDALGPTVA 150

Query: 123 --RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
             + + +  P   F V  K DS    + AAS+ AKVTRD L  I   ++P    +   GY
Sbjct: 151 YEQWLSQRFPEIKFTVANKADSKFKIVGAASVAAKVTRDAL--IDASRFPA---ERGSGY 205

Query: 180 PT 181
           P+
Sbjct: 206 PS 207


>gi|306828934|ref|ZP_07462126.1| ribonuclease HIII [Streptococcus mitis ATCC 6249]
 gi|304429112|gb|EFM32200.1| ribonuclease HIII [Streptococcus mitis ATCC 6249]
          Length = 293

 Score = 41.2 bits (95), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 25/155 (16%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
           +P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  FPMIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHNIHKATL----DAIYHAVENLQVIPRSALIDGRSIPED-- 128
              A++   S  ++ I +++N     +     AI+  ++N  V P   +ID  + P++  
Sbjct: 138 PHQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQN-GVQPEKIVIDAFTSPKNYD 196

Query: 129 ---------LPCQAFAVIKGDSISLSIAAASIIAK 154
                     P +     K +   L++A +SIIA+
Sbjct: 197 KYLAQEANRFPNKVSLEEKAEGKYLAVAVSSIIAR 231


>gi|241154557|ref|XP_002407329.1| ribonuclease HI large subunit, putative [Ixodes scapularis]
 gi|215494090|gb|EEC03731.1| ribonuclease HI large subunit, putative [Ixodes scapularis]
          Length = 306

 Score = 41.2 bits (95), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 11/109 (10%)

Query: 28  GIDEVGRGALAGPVVVA----AIILDPNNIPFGINDSKKISHKKREEL---YEKITSSAI 80
           G+DE GRG + GP+V       +  + +    G  DSK ++ +KREEL    E+ + S  
Sbjct: 32  GVDEAGRGPVLGPMVYGIAYCPVEFEEDLKRLGFADSKTLTEEKREELVGVMEQRSESLG 91

Query: 81  ISISSASHQYIDKH--NIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
             +   S   I  H  N+ K +L+AI H  ++   + + AL DG  + E
Sbjct: 92  WMVEVISPTVICNHMLNMSKYSLNAISH--DSAIGLIKQALDDGVCVTE 138


>gi|330719016|ref|ZP_08313616.1| ribonuclease HIII [Leuconostoc fallax KCTC 3537]
          Length = 214

 Score = 41.2 bits (95), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 77/163 (47%), Gaps = 30/163 (18%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA---I 80
           G DEVG GA  GP+  AA+ +  +N+ +    G+ DSK ++     ++  KI +     +
Sbjct: 3   GSDEVGAGAYFGPLTTAAVYISQDNLDWVRQLGVADSKTLTDHDMIKMAPKIIAHLPHHV 62

Query: 81  ISISSASHQYID-KHNIHKATLDAIYHAVENLQVI-------PRSALIDGRSIPED---- 128
           +++    +  I  ++N+++  + AI H     +V+       P++ LID  ++P+     
Sbjct: 63  VNLLPEKYNAIQPQNNVNQ--MKAISHNFALHKVLEKIAPQKPQAILIDQFALPQTYYKH 120

Query: 129 ---------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162
                    +    +   K +   LS+AAASI+A+    + M+
Sbjct: 121 LTNANQQPIVRENVYFTTKAEQYHLSVAAASILARYVELQTMK 163


>gi|28374439|gb|AAH46061.1| Ribonuclease H2, subunit A [Danio rerio]
          Length = 307

 Score = 41.2 bits (95), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 38/186 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIIL------DPNNIPFGINDSKKISHKKREELYEKITSS--- 78
           GIDE GRG + GP+V            D  N+   + DSK ++  +RE L+ K+  +   
Sbjct: 32  GIDEAGRGPVLGPMVYGICFCPVSRKEDLKNLK--VADSKTLTEAERENLFVKLDEAKSF 89

Query: 79  -----AIIS---ISSASHQYIDKHNI----HKATLDAIYHAVENLQVIPRSALIDGRSIP 126
                 I+S   IS++  Q   K+N+    H A +  + +A+++  V  +   +D     
Sbjct: 90  VGWALQILSPNMISTSMLQRA-KYNLNALSHDAAIGLVQYALDS-GVQLKEVFVDTVGPA 147

Query: 127 E---DLPCQAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG---FD 174
           E   D   Q F  +      K DS+   ++AASI AKV RD  ++ + K   D G    D
Sbjct: 148 EKYQDKLSQRFPGVEVTVRPKADSLFPIVSAASICAKVARDHAVK-SWKFAEDLGDVDTD 206

Query: 175 SHVGYP 180
              GYP
Sbjct: 207 YGSGYP 212


>gi|56808625|ref|ZP_00366352.1| COG1039: Ribonuclease HIII [Streptococcus pyogenes M49 591]
          Length = 300

 Score = 41.2 bits (95), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 8/77 (10%)

Query: 3   CNSIPERPHFELEAMVREKNM----WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--- 55
            N++ +  +  +   V E N      P+ G DEVG G+  G + V A  +DP +  F   
Sbjct: 58  ANALAQELNLPVAKTVFEANNNSQDIPIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKK 117

Query: 56  -GINDSKKISHKKREEL 71
            G++DSKK+S K  +++
Sbjct: 118 LGVDDSKKLSDKTIQQI 134


>gi|46446313|ref|YP_007678.1| ribonuclease HIII [Candidatus Protochlamydia amoebophila UWE25]
 gi|73917847|sp|Q6MDE6|RNH3_PARUW RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|46399954|emb|CAF23403.1| putative ribonuclease HII [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 301

 Score = 41.2 bits (95), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 11/106 (10%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
           ++ P  GIDE G+G   GP+ +A + +  N        G+ DSK +S K   +L  +I +
Sbjct: 88  DLTPHIGIDESGKGDFFGPLCIAGVYIQANQFSKLQALGVKDSKTLSDKTIRQLASQIKN 147

Query: 78  SA---IISISSASHQ--YIDKHNIHKATLDAIYHAVENLQVIPRSA 118
                I+ I+ A +   Y D  N++   L A  HA    Q+I +S 
Sbjct: 148 LCLYHIVKINPAKYNEIYQDFKNLNH--LLAWGHATTIEQLILQSG 191


>gi|313678720|ref|YP_004056460.1| ribonuclease HIII [Mycoplasma bovis PG45]
 gi|312950718|gb|ADR25313.1| ribonuclease HIII [Mycoplasma bovis PG45]
          Length = 238

 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 45/186 (24%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI 80
            + G+DEVG G   GP+   A+ +D  N+      GI DSKK+S KK +EL  K+ +S +
Sbjct: 17  SIIGVDEVGVGDYFGPLCACAVFIDAQNVNKVAELGIKDSKKLSDKKIKELALKLKNSGL 76

Query: 81  ISISSA----------SHQY---IDKHNIHKATLDAIYHAVENLQ----VIPRSALIDG- 122
           I  S A          +  Y   I K  +H   ++++   ++N++     I + A +D  
Sbjct: 77  IYYSLAHLNPSGYNKLNKSYNANILKMFVHLKAINSVVFKLKNIKYDYIFIDKYASVDNM 136

Query: 123 ----------------RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166
                           + I ED+        K +S S+S+AAASI+A   RD+ + +  K
Sbjct: 137 LKYYNELVINNNWANFQEINEDILIAN----KAESYSVSVAAASILA---RDQFLTLVSK 189

Query: 167 KYPDYG 172
              +Y 
Sbjct: 190 MNDEYN 195


>gi|48762662|ref|NP_956520.2| ribonuclease H2 subunit A [Danio rerio]
 gi|47938809|gb|AAH71375.1| Ribonuclease H2, subunit A [Danio rerio]
          Length = 307

 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 38/186 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIIL------DPNNIPFGINDSKKISHKKREELYEKITSS--- 78
           GIDE GRG + GP+V            D  N+   + DSK ++  +RE L+ K+  +   
Sbjct: 32  GIDEAGRGPVLGPMVYGICFCPVSRKEDLKNLK--VADSKTLTEAERENLFVKLDEAKSF 89

Query: 79  -----AIIS---ISSASHQYIDKHNI----HKATLDAIYHAVENLQVIPRSALIDGRSIP 126
                 I+S   IS++  Q   K+N+    H A +  + +A+++  V  +   +D     
Sbjct: 90  VGWALQILSPNMISTSMLQRA-KYNLNALSHDAAIGLVQYALDS-GVQLKEVFVDTVGPA 147

Query: 127 E---DLPCQAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG---FD 174
           E   D   Q F  +      K DS+   ++AASI AKV RD  ++ + K   D G    D
Sbjct: 148 EKYQDKLSQRFPGVEVTVRPKADSLFPIVSAASICAKVARDHAVK-SWKFAEDLGDVDTD 206

Query: 175 SHVGYP 180
              GYP
Sbjct: 207 YGSGYP 212


>gi|70926382|ref|XP_735739.1| ribonuclease H1 large subunit [Plasmodium chabaudi chabaudi]
 gi|56509666|emb|CAH81806.1| ribonuclease H1 large subunit, putative [Plasmodium chabaudi
          chabaudi]
          Length = 133

 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI 80
          GIDE GRG + GP+V +       +        I+DSKKIS   RE+++ K+ +S +
Sbjct: 20 GIDEAGRGPVLGPMVYSGFYCKKEDEKLLKEMKIDDSKKISENDREKMFYKLNNSTL 76


>gi|10835820|pdb|1EKE|A Chain A, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
           With Mes Ligand
 gi|10835821|pdb|1EKE|B Chain B, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
           With Mes Ligand
          Length = 230

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 36/188 (19%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG + GP VV A  +    +      G+ DSK+++  KR  L + + +   +
Sbjct: 3   IIGIDEAGRGPVLGPXVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYLKKLLENLGYV 62

Query: 82  S--ISSAS--HQYIDKHNIHKATLDAIYHAVENL-----------QVIPRSALIDGRSIP 126
              I  A   +Q  +  N++   ++A     +NL           ++   +   + +   
Sbjct: 63  EKRILEAEEINQLXNSINLNDIEINAFSKVAKNLIEKLNIRDDEIEIYIDACSTNTKKFE 122

Query: 127 EDLPCQAFAVIKGDSISLSI-------------AAASIIAKVTRDRLMRIAHKKYPDYGF 173
           +    +   +IK  ++++ I             +AASIIAK  RD ++    K Y D G 
Sbjct: 123 DSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAKAERDEIIDYYKKIYGDIG- 181

Query: 174 DSHVGYPT 181
               GYP+
Sbjct: 182 ---SGYPS 186


>gi|94989199|ref|YP_597300.1| ribonuclease HIII [Streptococcus pyogenes MGAS9429]
 gi|94993086|ref|YP_601185.1| ribonuclease HIII [Streptococcus pyogenes MGAS2096]
 gi|166226673|sp|Q1JA20|RNH3_STRPB RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|166226674|sp|Q1JK67|RNH3_STRPC RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|94542707|gb|ABF32756.1| ribonuclease HIII [Streptococcus pyogenes MGAS9429]
 gi|94546594|gb|ABF36641.1| Ribonuclease HIII [Streptococcus pyogenes MGAS2096]
          Length = 300

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 4/51 (7%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREEL 71
           P+ G DEVG G+  G + V A  +DP +  F    G++DSKK+S K  +++
Sbjct: 84  PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQI 134


>gi|209559934|ref|YP_002286406.1| ribonuclease HIII [Streptococcus pyogenes NZ131]
 gi|226741383|sp|B5XI49|RNH3_STRPZ RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|209541135|gb|ACI61711.1| Ribonuclease HIII [Streptococcus pyogenes NZ131]
          Length = 300

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 4/51 (7%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREEL 71
           P+ G DEVG G+  G + V A  +DP +  F    G++DSKK+S K  +++
Sbjct: 84  PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQI 134


>gi|332522787|ref|ZP_08399039.1| ribonuclease HIII [Streptococcus porcinus str. Jelinkova 176]
 gi|332314051|gb|EGJ27036.1| ribonuclease HIII [Streptococcus porcinus str. Jelinkova 176]
          Length = 319

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 9/72 (12%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKIS-HKKRE--- 69
            R++N+ P+ G DEVG G+  G + V A  ++P + P+    G+NDSK ++ HK R+   
Sbjct: 96  TRDQNI-PLIGSDEVGNGSYFGGLAVVASYVEPTDHPYLKELGVNDSKTLNDHKIRQIAP 154

Query: 70  ELYEKITSSAII 81
            L EKI   A++
Sbjct: 155 LLEEKIRHKALL 166


>gi|139473162|ref|YP_001127877.1| ribonuclease HIII [Streptococcus pyogenes str. Manfredo]
 gi|166226677|sp|A2RCQ5|RNH3_STRPG RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|134271408|emb|CAM29628.1| ribonuclease HIII [Streptococcus pyogenes str. Manfredo]
          Length = 300

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 4/51 (7%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREEL 71
           P+ G DEVG G+  G + V A  +DP +  F    G++DSKK+S K  +++
Sbjct: 84  PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQI 134


>gi|312208153|pdb|3P56|A Chain A, The Structure Of The Human Rnase H2 Complex Defines Key
           Interaction Interfaces Relevant To Enzyme Function And
           Human Disease
 gi|312208156|pdb|3P56|D Chain D, The Structure Of The Human Rnase H2 Complex Defines Key
           Interaction Interfaces Relevant To Enzyme Function And
           Human Disease
          Length = 299

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 81/194 (41%), Gaps = 30/194 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           V G+ E GRG + GP+V A        +       + DSK +   +RE L+ K+  +  +
Sbjct: 30  VLGVAEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFV 89

Query: 82  SIS---------SASHQYIDKHNI----HKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
             +         S S     K+N+    H      I +A++   V      +D   +PE 
Sbjct: 90  GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQ-GVNVTQVFVDTVGMPET 148

Query: 129 LPC---QAF----AVIKGDSISLS--IAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177
                 Q+F      +K  + +L   ++AASI AKV RD+ ++     +K  D   D   
Sbjct: 149 YQARLQQSFPGIEVTVKAKAAALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGS 208

Query: 178 GYPT-AKHQQVIKE 190
           GYP   K +  +KE
Sbjct: 209 GYPNDPKTKAWLKE 222


>gi|21911127|ref|NP_665395.1| ribonuclease HIII [Streptococcus pyogenes MGAS315]
 gi|28895188|ref|NP_801538.1| ribonuclease HIII [Streptococcus pyogenes SSI-1]
 gi|25091193|sp|Q8K5Y5|RNH3_STRP3 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|21905338|gb|AAM80198.1| putative ribonuclease HIII [Streptococcus pyogenes MGAS315]
 gi|28810433|dbj|BAC63371.1| putative ribonuclease HIII [Streptococcus pyogenes SSI-1]
          Length = 300

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 4/51 (7%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREEL 71
           P+ G DEVG G+  G + V A  +DP +  F    G++DSKK+S K  +++
Sbjct: 84  PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQI 134


>gi|227499052|ref|ZP_03929189.1| ribonuclease HIII [Acidaminococcus sp. D21]
 gi|226904501|gb|EEH90419.1| ribonuclease HIII [Acidaminococcus sp. D21]
          Length = 320

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 103/227 (45%), Gaps = 44/227 (19%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKRE 69
           L A+ +   +W  AG DE G+G   GP+ VAA+ILD       +  G+ DSK +S  K  
Sbjct: 103 LGAVKKPGELW--AGSDESGKGDYLGPLCVAAVILDEIGAKKLLALGVRDSKTLSDAKIR 160

Query: 70  ELYEKI------TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----A 118
            L  ++      +++A +     + +Y    N++   L + YH    + V+ +      A
Sbjct: 161 RLAPQVYAIAKASAAAALMPQQYNEEYEKAQNLN--PLLSTYHIGAIMTVLKKVPECHFA 218

Query: 119 LIDG------------RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166
           L+D             R++P       ++  KG++  +++AAASI+A   R   ++   +
Sbjct: 219 LVDQFTRSPYIKNELERAVP---GLSVYSHTKGEA-DMAVAAASILA---RSLFLKKMEE 271

Query: 167 KYPDYGFDSHVG---YPTAKHQQVIKEKGPSCIH---RLTFRPLRNL 207
              + GF+   G     T   +++I+++G   +    +L F   +NL
Sbjct: 272 LSQEAGFELPFGGGAQATRAAEKIIQQEGRERLGHYAKLHFANTKNL 318


>gi|319892130|ref|YP_004149005.1| Ribonuclease HIII [Staphylococcus pseudintermedius HKU10-03]
 gi|317161826|gb|ADV05369.1| Ribonuclease HIII [Staphylococcus pseudintermedius HKU10-03]
          Length = 312

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 24/165 (14%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---SAI 80
           G DE G G   GP+ V A  +   +IP     G++DSK+++ KK   L E++ +    ++
Sbjct: 98  GSDEAGSGDYFGPLTVCACYVSAQHIPILKELGVDDSKRLTDKKIVALAEQLVTFLPHSL 157

Query: 81  ISISSASHQYIDKHNIHKATLDAIYH--AVEN-LQVIPRSA----LIDGRSIPEDLPCQA 133
           + + +  +    +    +  + A+ H   ++N L+ +  +     +ID  +  E     A
Sbjct: 158 LVLDNPKYNERKQLGWSQVKMKAVLHNECIKNVLKKVDATEVDYIVIDQFAKQEVYEHYA 217

Query: 134 FAVI----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
              I          KG+S SL+IAAASII++    + M    K+Y
Sbjct: 218 LGAIPERQKTQFETKGESKSLAIAAASIISRYAFVKHMDQLSKRY 262


>gi|94995019|ref|YP_603117.1| ribonuclease HIII [Streptococcus pyogenes MGAS10750]
 gi|166226676|sp|Q1J513|RNH3_STRPF RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|94548527|gb|ABF38573.1| Ribonuclease HIII [Streptococcus pyogenes MGAS10750]
          Length = 300

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 4/51 (7%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREEL 71
           P+ G DEVG G+  G + V A  +DP +  F    G++DSKK+S K  +++
Sbjct: 84  PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQI 134


>gi|15675667|ref|NP_269841.1| ribonuclease HIII [Streptococcus pyogenes M1 GAS]
 gi|19746773|ref|NP_607909.1| ribonuclease HIII [Streptococcus pyogenes MGAS8232]
 gi|50914922|ref|YP_060894.1| ribonuclease HIII [Streptococcus pyogenes MGAS10394]
 gi|71911377|ref|YP_282927.1| ribonuclease HIII [Streptococcus pyogenes MGAS5005]
 gi|54039253|sp|P66678|RNH3_STRP8 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|54042176|sp|P66677|RNH3_STRP1 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|73917858|sp|Q5XA52|RNH3_STRP6 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|13622880|gb|AAK34562.1| putative ribonuclease HIII [Streptococcus pyogenes M1 GAS]
 gi|19749005|gb|AAL98408.1| putative ribonuclease HIII [Streptococcus pyogenes MGAS8232]
 gi|50903996|gb|AAT87711.1| Ribonuclease HIII [Streptococcus pyogenes MGAS10394]
 gi|71854159|gb|AAZ52182.1| ribonuclease HIII [Streptococcus pyogenes MGAS5005]
          Length = 300

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 4/51 (7%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREEL 71
           P+ G DEVG G+  G + V A  +DP +  F    G++DSKK+S K  +++
Sbjct: 84  PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQI 134


>gi|323464759|gb|ADX76912.1| ribonuclease HIII [Staphylococcus pseudintermedius ED99]
          Length = 312

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 24/165 (14%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---SAI 80
           G DE G G   GP+ V A  +   +IP     G++DSK+++ KK   L E++ +    ++
Sbjct: 98  GSDEAGSGDYFGPLTVCACYVSAQHIPILKELGVDDSKRLTDKKIVALAEQLVTFLPHSL 157

Query: 81  ISISSASHQYIDKHNIHKATLDAIYH--AVEN-LQVIPRSA----LIDGRSIPEDLPCQA 133
           + + +  +    +    +  + A+ H   ++N L+ +  +     +ID  +  E     A
Sbjct: 158 LVLDNPKYNERKQLGWSQVKMKAVLHNECIKNVLKKVDATEVDYIVIDQFAKQEVYEHYA 217

Query: 134 FAVI----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
              I          KG+S SL+IAAASII++    + M    K+Y
Sbjct: 218 LGAIPERQKTQFETKGESKSLAIAAASIISRYAFVKHMDQLSKRY 262


>gi|302657829|ref|XP_003020627.1| hypothetical protein TRV_05276 [Trichophyton verrucosum HKI 0517]
 gi|291184480|gb|EFE40009.1| hypothetical protein TRV_05276 [Trichophyton verrucosum HKI 0517]
          Length = 361

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 38/180 (21%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-------NDSKKISHKKREELYE----- 73
           V GIDE GRG + GP+V +A  L P ++   +       +DSK ++ + R  L       
Sbjct: 68  VLGIDEAGRGPVLGPMVYSAFYL-PIHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLCTQ 126

Query: 74  ------------KITSSAIISISSASHQYIDKHNIHKATLDA----IYHAVENLQVIPRS 117
                       K+ S+  IS           +N++   LDA    I   VE   +  + 
Sbjct: 127 GHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQGIDVKE 186

Query: 118 ALIDGRSIPEDLPCQAFAVIKG---------DSISLSIAAASIIAKVTRDRLMRIAHKKY 168
             +D    PE    +   V  G         DS+   ++AAS+ AKVTRD  +   ++ +
Sbjct: 187 VYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESW 246


>gi|315044861|ref|XP_003171806.1| ribonuclease H2 subunit A [Arthroderma gypseum CBS 118893]
 gi|311344149|gb|EFR03352.1| ribonuclease H2 subunit A [Arthroderma gypseum CBS 118893]
          Length = 362

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 38/180 (21%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-------NDSKKISHKKREELYE----- 73
           V GIDE GRG + GP+V +A  L P ++   +       +DSK ++ + R  L       
Sbjct: 68  VLGIDEAGRGPVLGPMVYSAFYL-PIHLHNSLLADEHHFDDSKVLTPEVRSNLMRSLCTQ 126

Query: 74  ------------KITSSAIISISSASHQYIDKHNIHKATLDA----IYHAVENLQVIPRS 117
                       K+ S+  IS           +N++   LDA    I   VE   +  + 
Sbjct: 127 GHSLHNSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQGIDVKE 186

Query: 118 ALIDGRSIPEDLPCQAFAVIKG---------DSISLSIAAASIIAKVTRDRLMRIAHKKY 168
             +D    PE    +   V  G         DS+   ++AAS+ AKVTRD  +   ++ +
Sbjct: 187 VYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESW 246


>gi|302510819|ref|XP_003017361.1| hypothetical protein ARB_04241 [Arthroderma benhamiae CBS 112371]
 gi|291180932|gb|EFE36716.1| hypothetical protein ARB_04241 [Arthroderma benhamiae CBS 112371]
          Length = 361

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 38/180 (21%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-------NDSKKISHKKREELYE----- 73
           V GIDE GRG + GP+V +A  L P ++   +       +DSK ++ + R  L       
Sbjct: 68  VLGIDEAGRGPVLGPMVYSAFYL-PIHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLCTQ 126

Query: 74  ------------KITSSAIISISSASHQYIDKHNIHKATLDA----IYHAVENLQVIPRS 117
                       K+ S+  IS           +N++   LDA    I   VE   +  + 
Sbjct: 127 SHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQGINVKE 186

Query: 118 ALIDGRSIPEDLPCQAFAVIKG---------DSISLSIAAASIIAKVTRDRLMRIAHKKY 168
             +D    PE    +   V  G         DS+   ++AAS+ AKVTRD  +   ++ +
Sbjct: 187 VYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESW 246


>gi|195388322|ref|XP_002052829.1| GJ19740 [Drosophila virilis]
 gi|194149286|gb|EDW64984.1| GJ19740 [Drosophila virilis]
          Length = 339

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 39/188 (20%)

Query: 28  GIDEVGRGALAGPVV--VAAIILDPNN--IPFGINDSKKISHKKREELYEKITS------ 77
           G+DE GRG + GP+V  ++   L+  +  +  G  DSK+++ +KRE ++  + +      
Sbjct: 66  GVDEAGRGPVLGPMVYGISYCPLERKSALVELGCADSKQLTEEKREIIFNDLNTLEYANS 125

Query: 78  -----SAIIS--ISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127
                  IIS  + S+S     K ++++ ++D+    ++   +  V      +D    PE
Sbjct: 126 CIGWAVEIISPNVISSSMYRRTKCSLNEVSMDSAMGLIQEAIDAGVNIAEVYVDTVGPPE 185

Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP------DYG 172
                     P     V  K DS    ++AASI AKVTRD  +++    +P      D  
Sbjct: 186 KYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWQ--FPEGLIIKDNA 243

Query: 173 FDSHVGYP 180
           F S  GYP
Sbjct: 244 FGS--GYP 249


>gi|328783769|ref|XP_396289.3| PREDICTED: ribonuclease H2 subunit A-like isoform 1 [Apis
           mellifera]
          Length = 350

 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 36/184 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELYEKITSS---- 78
           GIDE GRG + GP+V   I   P +     +  G  DSK ++ +KR+ +++KI       
Sbjct: 82  GIDEAGRGPVLGPMVY-GISYAPLSEKQLLVDLGCADSKSLTEEKRDTIFDKICEQYKTI 140

Query: 79  ----AIIS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA------LIDGRSI 125
                +IS   IS++ ++ + K ++++ ++++   A+E  +++  +        +D    
Sbjct: 141 GWAVDVISPNVISNSMYRRV-KTSLNEVSMNS---AIELAKLVIEAGARITEIYVDTIGK 196

Query: 126 PEDLPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
           PE       Q F  I      K DS    ++AASI AKV+RD  +R           +  
Sbjct: 197 PEKYQAKLEQIFPDIKITVAKKADSTYPIVSAASICAKVSRDHAIRAWQFLEGSITTEYG 256

Query: 177 VGYP 180
            GYP
Sbjct: 257 SGYP 260


>gi|150864655|ref|XP_001383577.2| hypothetical protein PICST_31007 [Scheffersomyces stipitis CBS
           6054]
 gi|149385911|gb|ABN65548.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 347

 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 35/172 (20%)

Query: 26  VAGIDEVGRGALAGPVVVA-AIILDPNNI----PFGINDSKKISHKKREELYEKI----- 75
           V G+DE GRG + GP+V   A  L+  +      +G  DSK +  +KR+EL+  I     
Sbjct: 72  VLGVDEAGRGPVLGPMVYGIAFALEKYSTRLQKEYGFADSKTLKEEKRDELFYSIEDEAN 131

Query: 76  ----------TSSAIISISSA---SHQYIDKHNIHKATLDAIYHAVENL---QVIPRSAL 119
                     T+     ISS    S   I  +N+++   D     ++ +    V  +   
Sbjct: 132 ELNRNVGWATTTMTARDISSGMLRSVLGIGNYNLNEQAHDTTIQLIKEVIAKGVNVKKIY 191

Query: 120 IDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMR 162
           +D    P     +   +          K DSI   ++ AS++AKVTRD  +R
Sbjct: 192 VDTVGPPVTYQAKLQKIFPETEVTVAKKADSIYPIVSTASVMAKVTRDANIR 243


>gi|322387275|ref|ZP_08060885.1| ribonuclease HIII [Streptococcus infantis ATCC 700779]
 gi|321141804|gb|EFX37299.1| ribonuclease HIII [Streptococcus infantis ATCC 700779]
          Length = 293

 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 9/78 (11%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKK 67
           +++E +V  +N +P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K
Sbjct: 67  YQVEQVVSGQN-FPLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKVGVGDSKTLTDQK 125

Query: 68  REELY----EKITSSAII 81
             +L     EKI   A++
Sbjct: 126 IRQLASLLKEKIQHQALL 143


>gi|27467751|ref|NP_764388.1| ribonuclease HIII [Staphylococcus epidermidis ATCC 12228]
 gi|73917854|sp|Q8CPL8|RNH3_STAES RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|27315295|gb|AAO04430.1|AE016746_220 putative ribonuclease HIII [Staphylococcus epidermidis ATCC 12228]
          Length = 308

 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 28/159 (17%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
           N +   G DE G G   GP+ V A  +  ++I      G++DSKK++  K  +L E++ +
Sbjct: 86  NRFHCIGSDEAGSGDYFGPLTVCAAYVSQSHIKILKELGVDDSKKLNDTKIVDLAEQLIT 145

Query: 78  ---SAIISISSASHQYIDKHNI--HKATLDAIYH--AVEN-LQVIPRSAL----IDGRSI 125
               +++++ +   +Y ++ +I   +  + A+ H  A++N LQ I +  L    ID  + 
Sbjct: 146 FIPHSLLTLDNV--KYNERQSIGWSQVKMKAVLHNEAIKNVLQKIEQDQLDYIVIDQFAK 203

Query: 126 PEDLPCQAFAVI----------KGDSISLSIAAASIIAK 154
            E     A + +          KG+S SL+IA ASII++
Sbjct: 204 REVYQHYALSALPFPDKTKFETKGESKSLAIAVASIISR 242


>gi|239613574|gb|EEQ90561.1| ribonuclease HI large subunit [Ajellomyces dermatitidis ER-3]
 gi|327352659|gb|EGE81516.1| ribonuclease [Ajellomyces dermatitidis ATCC 18188]
          Length = 343

 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 72/176 (40%), Gaps = 35/176 (19%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG------INDSKKISHKKREELY------- 72
           V G+DE GRG + GP+V +A  L  +            +DSK ++   R  L        
Sbjct: 58  VLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTPAVRSNLMHLLCSPD 117

Query: 73  EKITSSAIISISSASHQYID---------KHNIHKATLDA----IYHAVENLQVIPRSAL 119
             +++S    +   S + I           +N++   +DA    I   VE   V  R   
Sbjct: 118 NSLSTSCGWGVKVMSARDISAGMLRPRTRNYNLNAQAMDATTELIRCIVEEKGVNVREVY 177

Query: 120 IDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK 166
           ID    PE          P     V K  DS+  S++AASI AKVTRD  + I ++
Sbjct: 178 IDTIGNPETYQRKLERVFPSLKITVAKKADSLYPSVSAASICAKVTRDVALEICYE 233


>gi|163791555|ref|ZP_02185959.1| ribonuclease HIII [Carnobacterium sp. AT7]
 gi|159873191|gb|EDP67291.1| ribonuclease HIII [Carnobacterium sp. AT7]
          Length = 312

 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 38/162 (23%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
           W V G DEVG G+  GP+ V A  +D + +      G+ DSK++          +I   A
Sbjct: 95  WSVIGSDEVGTGSYFGPLTVVAAYVDQSQLALLKELGVRDSKEMKD-------SEIIRVA 147

Query: 80  IISISSASHQYI----DKHNIHKATL-----------DAIYHAVENLQ-VIPRSALIDGR 123
              I+   H  +    +K+N  + T+            A+ H +E ++   P   LID  
Sbjct: 148 KDLITFLPHSLLNVMPEKYNAIQPTMTQGKMKAILHNQALGHVLEKIKPKKPDGILIDQF 207

Query: 124 SIP-------EDLPCQAFAVI----KGDSISLSIAAASIIAK 154
            +P        D P Q    I    KG+   L++AAASIIA+
Sbjct: 208 ELPATYFKHISDQPKQIKETIYFQTKGEGHHLAVAAASIIAR 249


>gi|261192900|ref|XP_002622856.1| ribonuclease HI large subunit [Ajellomyces dermatitidis SLH14081]
 gi|239588991|gb|EEQ71634.1| ribonuclease HI large subunit [Ajellomyces dermatitidis SLH14081]
          Length = 343

 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 72/176 (40%), Gaps = 35/176 (19%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG------INDSKKISHKKREELY------- 72
           V G+DE GRG + GP+V +A  L  +            +DSK ++   R  L        
Sbjct: 58  VLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTPAVRSNLMHLLCSPD 117

Query: 73  EKITSSAIISISSASHQYID---------KHNIHKATLDA----IYHAVENLQVIPRSAL 119
             +++S    +   S + I           +N++   +DA    I   VE   V  R   
Sbjct: 118 NSLSTSCGWGVKVMSARDISAGMLRPRTRNYNLNAQAMDATTELIRCIVEEKGVNVREVY 177

Query: 120 IDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK 166
           ID    PE          P     V K  DS+  S++AASI AKVTRD  + I ++
Sbjct: 178 IDTIGNPETYQRKLERVFPSLKITVAKKADSLYPSVSAASICAKVTRDVALEICYE 233


>gi|154288434|ref|XP_001545012.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150408653|gb|EDN04194.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 341

 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 37/177 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI------PFGINDSKKISHKKREELYEKITSSA 79
           V G+DE GRG + GP+V +A  L            +  +DSK ++ + R  L  ++++  
Sbjct: 57  VLGVDEAGRGPVLGPMVYSAFYLPLPLHHSLLAEEYHFDDSKVLTPEVRSSLMRQLSTPG 116

Query: 80  IISISSASHQYID-----------------KHNIHKATLDA----IYHAVENLQVIPRSA 118
             S+SS+    +                   +N++   +DA    I   V+   +  +  
Sbjct: 117 -NSLSSSCGWGVKVMSARDIAAGMLRPGTRNYNLNAQAMDATTELIRCIVQERGINVKEV 175

Query: 119 LIDGRSIPED--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHK 166
            ID    PE          P     V  K DS+  S++AAS+ AKVTRD  + I ++
Sbjct: 176 YIDTIGNPEAYQRKLEQIFPSLKITVAKKADSLYPSVSAASVCAKVTRDVALEICYR 232


>gi|242373372|ref|ZP_04818946.1| ribonuclease HIII [Staphylococcus epidermidis M23864:W1]
 gi|242348735|gb|EES40337.1| ribonuclease HIII [Staphylococcus epidermidis M23864:W1]
          Length = 311

 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 24/151 (15%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS---SAI 80
           G DE G G   GP+ V A  +   N       G++DSKK++  K  E+ E++ +    ++
Sbjct: 96  GSDEAGSGDYFGPLTVCAAYVSEKNAQVLKTLGVDDSKKLTDTKIVEIAEQLITFIPHSL 155

Query: 81  ISISSASHQYIDKHNIHKATLDAIYH-----------AVENLQVI-----PRSALIDGRS 124
           +++ +  +    K    +  + A+ H            +E+L  I      +  +    +
Sbjct: 156 LTLDNVKYNERQKMGWSQVKMKAVLHNEAIKNVTQKIEIEDLDYIVIDQFAKREVYQHYA 215

Query: 125 IPE-DLPCQAFAVIKGDSISLSIAAASIIAK 154
           + E   P +     KG+S SL+IAAASII++
Sbjct: 216 LSELPFPKKTKFETKGESKSLAIAAASIISR 246


>gi|194017282|ref|ZP_03055894.1| ribonuclease hiii [Bacillus pumilus ATCC 7061]
 gi|194011150|gb|EDW20720.1| ribonuclease hiii [Bacillus pumilus ATCC 7061]
          Length = 307

 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 87/208 (41%), Gaps = 42/208 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77
           V G DEVG G   GP+ V A  +D + +      G+ DSK +   +     ++L + I  
Sbjct: 95  VIGSDEVGTGDYFGPMTVCAAYVDASQLALMKELGVKDSKGLKDPQIINIAKDLIKTIPF 154

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA-- 135
           S ++ + +  +  + +  + +  + A+ H      V+ +   +DG+  PE +    FA  
Sbjct: 155 SLLV-LRNEKYNAMQEKGMSQGKMKALLHNQVITSVLEK---LDGKQ-PEAILIDQFAEP 209

Query: 136 -------------------VIKGDSISLSIAAASIIAK----VTRDRLMRIAHKKYPDYG 172
                                K + I LS+AAASIIA+    +  D+L + A    P  G
Sbjct: 210 GIYFKHLAGKKIIRERTYFSTKAEGIHLSVAAASIIARYAFLIEMDKLSKAAGFDIPK-G 268

Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
              HV    AK   +IK  G   + + T
Sbjct: 269 AGPHVDKAAAK---LIKLHGEEALRQFT 293


>gi|223967509|emb|CAR93485.1| CG13690-PA [Drosophila melanogaster]
          Length = 347

 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 29/165 (17%)

Query: 28  GIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS----- 78
           G+DE GRG + GP+V  ++   L+ N      G  DSK+++ +KR+ ++  I +      
Sbjct: 74  GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEEKRDIIFNDINTKEYATS 133

Query: 79  ----AIISIS----SASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127
               A+  IS    S S     K ++++ ++D+    ++   +  V      +D    PE
Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193

Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRI 163
                     P     V  K DS    ++AASI AKVTRD  +++
Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKV 238


>gi|327297598|ref|XP_003233493.1| ribonuclease HI large subunit [Trichophyton rubrum CBS 118892]
 gi|326464799|gb|EGD90252.1| ribonuclease HI large subunit [Trichophyton rubrum CBS 118892]
          Length = 361

 Score = 40.4 bits (93), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 38/180 (21%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-------NDSKKISHKKREELYE----- 73
           V GIDE GRG + GP+V +A  L P ++   +       +DSK ++ + R  L       
Sbjct: 68  VLGIDEAGRGPVLGPMVYSAFYL-PVHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLCTQ 126

Query: 74  ------------KITSSAIISISSASHQYIDKHNIHKATLDA----IYHAVENLQVIPRS 117
                       K+ S+  IS           +N++   LDA    I   VE   +  + 
Sbjct: 127 GHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETHGIDVKE 186

Query: 118 ALIDGRSIPEDLPCQAFAVIKG---------DSISLSIAAASIIAKVTRDRLMRIAHKKY 168
             +D    PE    +   V  G         DS+   ++AAS+ AKVTRD  +   ++ +
Sbjct: 187 VYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESW 246


>gi|291320114|ref|YP_003515372.1| ribonuclease HII [Mycoplasma agalactiae]
 gi|290752443|emb|CBH40414.1| Ribonuclease HII (RNase HII) [Mycoplasma agalactiae]
          Length = 238

 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 45/186 (24%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI 80
            + GIDEVG G   GP+   A+ +D  N+      GI DSKKIS KK +EL  K+ SS +
Sbjct: 17  SIIGIDEVGVGDYFGPLCACAVFIDAKNVSKVAQLGIKDSKKISDKKIKELAAKLKSSKL 76

Query: 81  ISISSA-------------SHQYIDKHNIHKATLDAI----------------YHAVENL 111
           IS S A              + +I K  +H   ++++                Y + EN+
Sbjct: 77  ISYSLAHLNPSGYNKLNKNYNAHILKMFVHLKAINSLSAKLENDKHDYILIDKYASAENM 136

Query: 112 -----QVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166
                +++  +   + + I ED+     A    +S S+S+AAASI+A   RD+ + +  K
Sbjct: 137 LKYYNELVISNNWANFKEINEDVLIANNA----ESYSISVAAASILA---RDQFLTLIAK 189

Query: 167 KYPDYG 172
              +Y 
Sbjct: 190 MNEEYN 195


>gi|162447673|ref|YP_001620805.1| ribonuclease HIII [Acholeplasma laidlawii PG-8A]
 gi|161985780|gb|ABX81429.1| ribonuclease HIII [Acholeplasma laidlawii PG-8A]
          Length = 285

 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 24/154 (15%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA 79
           +   G DEVG G   GPVVV +      +I F    G+ DSK +++K+  +L   I +  
Sbjct: 74  YAAIGSDEVGTGDALGPVVVCSAYASIEDIEFLEKLGVKDSKSMTNKEIVKLGPVIANRL 133

Query: 80  IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED-----LPCQAF 134
             SI   + +  ++       L+ I   + N  +I  ++ ++  ++P       LP   F
Sbjct: 134 THSIVILTPEKFNEQTQKGLNLNKIKALLHNHMIIKTTSKVEA-AVPVILDQFCLPTHYF 192

Query: 135 AVI--------------KGDSISLSIAAASIIAK 154
             +              K +S+ LS+AAASIIA+
Sbjct: 193 NYLKDEKLVYRDVEFYTKAESVHLSVAAASIIAR 226


>gi|194766523|ref|XP_001965374.1| GF24795 [Drosophila ananassae]
 gi|190617984|gb|EDV33508.1| GF24795 [Drosophila ananassae]
          Length = 347

 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 39/188 (20%)

Query: 28  GIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS----- 78
           G+DE GRG + GP+V  +A   L+        G  DSK+++ +KR+ ++  I +      
Sbjct: 74  GVDEAGRGPVLGPMVYGIAYCPLESKKALEDLGCADSKQLTEEKRDIIFNDINTKDYATS 133

Query: 79  ----AIISIS----SASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127
               A+  IS    S S     K ++++ ++D+    ++   +  V      +D    PE
Sbjct: 134 CIGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNISEVYVDTVGPPE 193

Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP------DYG 172
                     P     V  K DS    ++AASI AKVTRD  +++ +  +P      D  
Sbjct: 194 KYQEKLLKRFPTFKITVAKKADSTYPIVSAASICAKVTRDHALKVWN--FPEGLVIKDNA 251

Query: 173 FDSHVGYP 180
           F S  GYP
Sbjct: 252 FGS--GYP 257


>gi|225155691|ref|ZP_03724179.1| ribonuclease HIII [Opitutaceae bacterium TAV2]
 gi|224803485|gb|EEG21720.1| ribonuclease HIII [Opitutaceae bacterium TAV2]
          Length = 356

 Score = 40.0 bits (92), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREEL 71
           P AG+DE G+G   GPVV A +I + + I      G+ DSKKI+  +  EL
Sbjct: 106 PHAGLDESGKGDFFGPVVAATVIAEKSAIEAWRKAGVQDSKKITENRILEL 156


>gi|146421659|ref|XP_001486774.1| hypothetical protein PGUG_00151 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 343

 Score = 40.0 bits (92), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 68/178 (38%), Gaps = 37/178 (20%)

Query: 26  VAGIDEVGRGALAGPVVVA-AIILDPNNI----PFGINDSKKISHKKREELYEKIT---- 76
           V G+DE GRG + GP+V   +  L+         +G  DSK +   KR EL+  +     
Sbjct: 73  VLGVDEAGRGPVLGPMVYGISYCLESYQEDLKHKYGFADSKVLKEDKRRELFYMVELMDH 132

Query: 77  ------------------SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118
                             SSA++    A+         H  T+  I   V +L V  +  
Sbjct: 133 ELNENVGWATRTMTARDISSAMLQGRGAAGGANLNEQAHNTTIQLI-REVLDLGVNVKKV 191

Query: 119 LIDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHKK 167
            +D    P           P     V K  DSI   ++ AS++AKVTRD  +   H +
Sbjct: 192 FVDTVGPPATYQKKLQGIFPTLEITVTKKADSIFPIVSTASVVAKVTRDLNIHYYHDQ 249


>gi|89098885|ref|ZP_01171765.1| ribonuclease HIII [Bacillus sp. NRRL B-14911]
 gi|89086289|gb|EAR65410.1| ribonuclease HIII [Bacillus sp. NRRL B-14911]
          Length = 348

 Score = 40.0 bits (92), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 36/177 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREEL------YEKI 75
           V G DEVG G   GP+ V A      ++P     G+ DSK   H K +++       +++
Sbjct: 133 VIGSDEVGTGDYFGPITVVAAYAKKESLPLLKELGVKDSK---HLKDDQIIRIAKEIKEV 189

Query: 76  TSSAIISISSASHQYIDKHNIHKATLDAIYH--AVEN-LQVI----PRSALIDGRSIPED 128
              +++++ ++ +  + +  + +  + A+ H  A+ N L+ +    P + LID +   ED
Sbjct: 190 VPYSLLTLKNSKYNQLQQSGMSQGKIKALLHNQAIGNVLKKMAPEKPEAILID-QFAKED 248

Query: 129 -----LPCQA-------FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173
                L  Q+       F   K + I LS+AAASI+A   R   +R   K   + GF
Sbjct: 249 VYYRHLQGQSVIQRENVFFSTKAEGIHLSVAAASILA---RYAFLRYFDKLSEEAGF 302


>gi|229916367|ref|YP_002885013.1| ribonuclease HIII [Exiguobacterium sp. AT1b]
 gi|229467796|gb|ACQ69568.1| ribonuclease HIII [Exiguobacterium sp. AT1b]
          Length = 305

 Score = 40.0 bits (92), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKIS 64
           W V G DEVG+G   GP+VV A  +  + I      G+ DSK++S
Sbjct: 88  WSVVGSDEVGKGDYFGPLVVVAAFVSRDQIALVKELGVKDSKQLS 132


>gi|312210372|emb|CBX90459.1| similar to ribonuclease hi large subunit [Leptosphaeria maculans]
          Length = 357

 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 71/175 (40%), Gaps = 32/175 (18%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG------INDSKKISHKKREELYEKITS-- 77
           V G+DE GRG + GP+V A   L  +            NDSK ++   R  L   + +  
Sbjct: 60  VLGVDEAGRGPVLGPMVYALFYLPLSLHHSLLADTHHFNDSKVLTADFRTSLMRTLCTPS 119

Query: 78  -----SAIISISSASHQYIDKH-------NIHKATLDAIYHAVENL---QVIPRSALIDG 122
                +A  +  S S Q I  H       N++   +DA    ++ +    V      ID 
Sbjct: 120 TDLHAAAGWATRSLSAQDISAHMLSPSVYNLNAQAMDATIDLIKGVLEKGVNVTDIYIDT 179

Query: 123 RSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
              PE          P     V K  DS+   ++AAS+ AKVTRD  + + + KY
Sbjct: 180 IGKPEIYQKKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRDAALEVGYGKY 234


>gi|320582951|gb|EFW97168.1| ribonuclease HI large subunit [Pichia angusta DL-1]
          Length = 303

 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 41/191 (21%)

Query: 26  VAGIDEVGRGALAGPVV--VAAIILDPNN---IPFGINDSKKISHKKREELYEKI----- 75
           + G+DE GRG + GP+V  +A  + D ++     +G  DSK ++ ++R++L + I     
Sbjct: 42  ILGVDEAGRGPVLGPMVYGIAYCLKDYSSDLKSVYGFADSKTLTVERRDQLMKSIIEPDG 101

Query: 76  ----------TSSAIISISSA--SHQYIDKHNIHKATLDA---IYHAVENLQVIPRSALI 120
                     T+     ISS     + I   N+++   DA   +   V + +V  +   +
Sbjct: 102 DLCQNVGWATTTMTARDISSEMLKPRLIGNINLNEQAHDATIKLIQGVLDQKVNLKEVYV 161

Query: 121 DG--------RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRD-RLMRIAHKKYPD 170
           D         R +    P     V  K DS+   ++ ASI+AKVTRD  L  +A      
Sbjct: 162 DTVGPPDSYQRKLSSRFPGIKVTVTKKADSLFPIVSTASIVAKVTRDCSLYYLAD----- 216

Query: 171 YGFDSHVGYPT 181
            G D   GYP+
Sbjct: 217 -GADWGSGYPS 226


>gi|194853461|ref|XP_001968168.1| GG24650 [Drosophila erecta]
 gi|190660035|gb|EDV57227.1| GG24650 [Drosophila erecta]
          Length = 347

 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 83/188 (44%), Gaps = 39/188 (20%)

Query: 28  GIDEVGRGALAGPVV--VAAIILDPNN--IPFGINDSKKISHKKREELYEKITSS----- 78
           G+DE GRG + GP+V  ++   L+        G  DSK+++ +KR+ ++  I +      
Sbjct: 74  GVDEAGRGPVLGPMVYGISYCPLESKKPLEDLGCADSKQLTEEKRDIIFNDINTKDYATS 133

Query: 79  ------AIISIS--SASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127
                  IIS S  S S     K ++++ ++D+    ++   +  V      +D    PE
Sbjct: 134 CIGWAVEIISPSTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193

Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP------DYG 172
                     P     V  K DS    ++AASI AKVTRD  +++   K+P      D  
Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--KFPEGLVIKDNA 251

Query: 173 FDSHVGYP 180
           F S  GYP
Sbjct: 252 FGS--GYP 257


>gi|319401546|gb|EFV89756.1| ribonuclease HIII [Staphylococcus epidermidis FRI909]
          Length = 308

 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 24/157 (15%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
           N +   G DE G G   GP+ V A  +  ++I      G++DSKK++  K  +L E++ +
Sbjct: 86  NHFHCIGSDEAGSGDYFGPLTVCAAYVSQSHIKILKELGVDDSKKLNDTKIVDLAEQLIT 145

Query: 78  ---SAIISISSASHQYIDKHNIHKATLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE 127
               +++++ +  +         +  + A+ H  A++N +Q I +  L    ID  +  E
Sbjct: 146 FIPHSLLTLDNVKYNERQSLGWSQVKMKAVLHNEAIKNVIQKIEQDQLDYIVIDQFAKRE 205

Query: 128 DLPCQAFAVI----------KGDSISLSIAAASIIAK 154
                A + +          KG+S SL+IA ASII++
Sbjct: 206 VYQHYALSALPFPDKTKFETKGESKSLAIATASIISR 242


>gi|255931627|ref|XP_002557370.1| Pc12g05230 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211581989|emb|CAP80150.1| Pc12g05230 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 343

 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 74/177 (41%), Gaps = 37/177 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKR---------- 68
           V GIDE GRG + GP+V  A  L P ++           +DSK ++   R          
Sbjct: 62  VLGIDEAGRGPVLGPMVYGAFYL-PLDLHHSLLTEKHSFDDSKVLTPAVRANLMHLLNTP 120

Query: 69  -EELYE------KITSSAIIS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118
            + L+E      K+ S+  IS   + S +  Y        AT++ I   VE+  V  R  
Sbjct: 121 GDSLFESCGYAIKVLSARDISSGMMRSPTAVYNLNAQAMDATVEIIRGVVEDRGVDVREV 180

Query: 119 LIDGRSIPED--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHK 166
            ID    P           P     V  K DS+   ++AAS+ AKVTRD  + + ++
Sbjct: 181 YIDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAKVTRDVALEVMYE 237


>gi|294056228|ref|YP_003549886.1| ribonuclease HIII [Coraliomargarita akajimensis DSM 45221]
 gi|293615561|gb|ADE55716.1| ribonuclease HIII [Coraliomargarita akajimensis DSM 45221]
          Length = 329

 Score = 39.7 bits (91), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 4/64 (6%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS 82
           AG+DE G+G L GP+V A ++ D + +      G+ DSKK++     +L ++I  +  + 
Sbjct: 111 AGMDESGKGDLFGPLVTACVVADGDMVRQWLELGVADSKKLTDNSILKLEKEIRKTKGVV 170

Query: 83  ISSA 86
           I +A
Sbjct: 171 IKTA 174


>gi|108803638|ref|YP_643575.1| RNase HII [Rubrobacter xylanophilus DSM 9941]
 gi|108764881|gb|ABG03763.1| RNase HII [Rubrobacter xylanophilus DSM 9941]
          Length = 311

 Score = 39.7 bits (91), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 10/102 (9%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIIL-----DPNNIPFGINDSKKISHKKREEL----Y 72
           N  P  GIDE G+G   GP+VVA + L     D      G+ DSK +  ++   L     
Sbjct: 87  NPLPRIGIDEAGKGEYLGPLVVAGVRLSGAGDDLRLRELGVRDSKALGAERVRRLARAVV 146

Query: 73  EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI 114
           E++   A+  IS A  +Y  +       ++ +   + NL+++
Sbjct: 147 EELGGEAVRVISLAPREYGRRREEAGGNVNRLLAEL-NLEIV 187


>gi|240273728|gb|EER37247.1| ribonuclease HI large subunit [Ajellomyces capsulatus H143]
 gi|325094841|gb|EGC48151.1| ribonuclease HI large subunit [Ajellomyces capsulatus H88]
          Length = 341

 Score = 39.7 bits (91), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 37/177 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI------PFGINDSKKISHKKREELYEKITSSA 79
           V G+DE GRG + GP+V +A  L            +  +DSK ++   R  L  ++ S+ 
Sbjct: 57  VLGVDEAGRGPVLGPMVYSAFYLPLPLHHSLLAEEYHFDDSKVLTPAVRSSLMRQL-STP 115

Query: 80  IISISSASHQYID-----------------KHNIHKATLDA----IYHAVENLQVIPRSA 118
             S+SS+    +                   +N++   +DA    I   V+   +  +  
Sbjct: 116 DNSLSSSCGWGVKVMSARDIAAGMLQPGTRNYNLNAQAMDATTELIRCIVQERGINVKEV 175

Query: 119 LIDGRSIPED--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHK 166
            ID    PE          P     V  K DS+  S++AAS+ AKVTRD  + I ++
Sbjct: 176 YIDTIGNPEAYQRKLEQIFPSLQITVAKKADSLYPSVSAASVCAKVTRDVALEICYR 232


>gi|57866643|ref|YP_188306.1| ribonuclease HIII [Staphylococcus epidermidis RP62A]
 gi|242242439|ref|ZP_04796884.1| ribonuclease HIII [Staphylococcus epidermidis W23144]
 gi|73917855|sp|Q5HQ34|RNH3_STAEQ RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|57637301|gb|AAW54089.1| ribonuclease HIII [Staphylococcus epidermidis RP62A]
 gi|242234146|gb|EES36458.1| ribonuclease HIII [Staphylococcus epidermidis W23144]
          Length = 308

 Score = 39.7 bits (91), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 24/157 (15%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
           N +   G DE G G   GP+ V A  +  ++I      G++DSKK++  K  +L E++ +
Sbjct: 86  NHFHCIGSDEAGSGDYFGPLTVCAAYVSQSHIKILKELGVDDSKKLNDTKIVDLAEQLIT 145

Query: 78  ---SAIISISSASHQYIDKHNIHKATLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE 127
               +++++ +  +         +  + A+ H  A++N +Q I +  L    ID  +  E
Sbjct: 146 FIPHSLLTLDNVKYNERQSLGWSQVKMKAVLHNEAIKNVIQKIEQDQLDYIVIDQFAKRE 205

Query: 128 DLPCQAFAVI----------KGDSISLSIAAASIIAK 154
                A + +          KG+S SL+IA ASII++
Sbjct: 206 VYQHYALSALPFPDKTKFETKGESKSLAIATASIISR 242


>gi|270293333|ref|ZP_06199542.1| ribonuclease HIII [Streptococcus sp. M143]
 gi|270278182|gb|EFA24030.1| ribonuclease HIII [Streptococcus sp. M143]
          Length = 293

 Score = 39.7 bits (91), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 37/218 (16%)

Query: 18  VREKNM---WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE 70
           VR++N    +P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +
Sbjct: 69  VRQENSGQDFPMIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQ 128

Query: 71  ----LYEKITSSAIISISSASHQYI-DKHNIHKATL----DAIYHAVENLQVIPRSALID 121
               L EK+   A++   S  ++ I +++N     +     AI+  ++   V P   +ID
Sbjct: 129 IAPILKEKVQHQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQK-GVQPERIVID 187

Query: 122 GRSIPED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170
             + P++            P +     K +   L++A +SIIA   RD  +        +
Sbjct: 188 AFTSPKNYDKYLTQEANRFPNKISLEEKAEGKYLAVAVSSIIA---RDLFLESLENLGRE 244

Query: 171 YGFDSHVGYPTAKHQ------QVIKEKGPSCIHRLTFR 202
            G+    G  TA  +      Q    KG +   +L F+
Sbjct: 245 LGYQLPSGAGTASDKVASKILQAYGMKGLNFCAKLHFK 282


>gi|320528430|ref|ZP_08029592.1| ribonuclease HIII [Solobacterium moorei F0204]
 gi|320131344|gb|EFW23912.1| ribonuclease HIII [Solobacterium moorei F0204]
          Length = 289

 Score = 39.7 bits (91), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 4/47 (8%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKIS 64
           N +P AG DEVG G   GPV V A  +  +++ F    G+ DSK++S
Sbjct: 78  NHYPQAGSDEVGTGDYFGPVCVCASYVTKDDVDFLVKLGVRDSKQMS 124


>gi|116806082|emb|CAL26424.1| CG13690 [Drosophila melanogaster]
 gi|116806084|emb|CAL26425.1| CG13690 [Drosophila melanogaster]
 gi|116806090|emb|CAL26428.1| CG13690 [Drosophila melanogaster]
          Length = 347

 Score = 39.7 bits (91), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 29/165 (17%)

Query: 28  GIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS----- 78
           G+DE GRG + GP+V  ++   L+ N      G  DSK+++  KR+ ++  I +      
Sbjct: 74  GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133

Query: 79  ----AIISIS----SASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127
               A+  IS    S S     K ++++ ++D+    ++   +  V      +D    PE
Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193

Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRI 163
                     P     V  K DS    ++AASI AKVTRD  +++
Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKV 238


>gi|24580635|ref|NP_608521.1| CG13690 [Drosophila melanogaster]
 gi|11387117|sp|Q9VPP5|RNH2A_DROME RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
           AltName: Full=Ribonuclease HI large subunit; Short=RNase
           HI large subunit; AltName: Full=Ribonuclease HI subunit
           A
 gi|7296208|gb|AAF51500.1| CG13690 [Drosophila melanogaster]
 gi|66772719|gb|AAY55671.1| IP10665p [Drosophila melanogaster]
 gi|220951678|gb|ACL88382.1| CG13690-PA [synthetic construct]
 gi|223967491|emb|CAR93476.1| CG13690-PA [Drosophila melanogaster]
 gi|223967495|emb|CAR93478.1| CG13690-PA [Drosophila melanogaster]
 gi|223967497|emb|CAR93479.1| CG13690-PA [Drosophila melanogaster]
 gi|223967507|emb|CAR93484.1| CG13690-PA [Drosophila melanogaster]
          Length = 347

 Score = 39.7 bits (91), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 29/165 (17%)

Query: 28  GIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS----- 78
           G+DE GRG + GP+V  ++   L+ N      G  DSK+++  KR+ ++  I +      
Sbjct: 74  GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133

Query: 79  ----AIISIS----SASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127
               A+  IS    S S     K ++++ ++D+    ++   +  V      +D    PE
Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193

Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRI 163
                     P     V  K DS    ++AASI AKVTRD  +++
Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKV 238


>gi|116806096|emb|CAL26431.1| CG13690 [Drosophila melanogaster]
          Length = 347

 Score = 39.7 bits (91), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 29/165 (17%)

Query: 28  GIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS----- 78
           G+DE GRG + GP+V  ++   L+ N      G  DSK+++  KR+ ++  I +      
Sbjct: 74  GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133

Query: 79  ----AIISIS----SASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127
               A+  IS    S S     K ++++ ++D+    ++   +  V      +D    PE
Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193

Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRI 163
                     P     V  K DS    ++AASI AKVTRD  +++
Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKV 238


>gi|322374879|ref|ZP_08049393.1| ribonuclease HIII [Streptococcus sp. C300]
 gi|321280379|gb|EFX57418.1| ribonuclease HIII [Streptococcus sp. C300]
          Length = 293

 Score = 39.7 bits (91), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 25/155 (16%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
           +P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  FPMIGTDEVGNGSYFGGLAVVASFVTPDQYDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHNIHKATL----DAIYHAVENLQVIPRSALIDGRSIPED-- 128
              A++   S  ++ I +++N     +     AI+  ++   V P   +ID  + P++  
Sbjct: 138 PHQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQK-GVQPEKIVIDAFTSPKNYD 196

Query: 129 ---------LPCQAFAVIKGDSISLSIAAASIIAK 154
                     P +     K +   L++A +SIIA+
Sbjct: 197 KYLAQEANRFPNKISLEEKAEGKYLAVAVSSIIAR 231


>gi|116806092|emb|CAL26429.1| CG13690 [Drosophila melanogaster]
 gi|116806094|emb|CAL26430.1| CG13690 [Drosophila melanogaster]
 gi|116806102|emb|CAL26434.1| CG13690 [Drosophila melanogaster]
          Length = 347

 Score = 39.7 bits (91), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 29/165 (17%)

Query: 28  GIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS----- 78
           G+DE GRG + GP+V  ++   L+ N      G  DSK+++  KR+ ++  I +      
Sbjct: 74  GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133

Query: 79  ----AIISIS----SASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127
               A+  IS    S S     K ++++ ++D+    ++   +  V      +D    PE
Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193

Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRI 163
                     P     V  K DS    ++AASI AKVTRD  +++
Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKV 238


>gi|116806086|emb|CAL26426.1| CG13690 [Drosophila melanogaster]
 gi|223967493|emb|CAR93477.1| CG13690-PA [Drosophila melanogaster]
 gi|223967499|emb|CAR93480.1| CG13690-PA [Drosophila melanogaster]
 gi|223967501|emb|CAR93481.1| CG13690-PA [Drosophila melanogaster]
          Length = 347

 Score = 39.7 bits (91), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 29/165 (17%)

Query: 28  GIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS----- 78
           G+DE GRG + GP+V  ++   L+ N      G  DSK+++  KR+ ++  I +      
Sbjct: 74  GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133

Query: 79  ----AIISIS----SASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127
               A+  IS    S S     K ++++ ++D+    ++   +  V      +D    PE
Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193

Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRI 163
                     P     V  K DS    ++AASI AKVTRD  +++
Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKV 238


>gi|225555530|gb|EEH03822.1| ribonuclease HI large subunit [Ajellomyces capsulatus G186AR]
          Length = 341

 Score = 39.7 bits (91), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 37/177 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI------PFGINDSKKISHKKREELYEKITSSA 79
           V G+DE GRG + GP+V +A  L            +  +DSK ++   R  L  ++ S+ 
Sbjct: 57  VLGVDEAGRGPVLGPMVYSAFYLPLPLHHSLLAEEYHFDDSKVLTPAVRSSLMRQL-STP 115

Query: 80  IISISSASHQYID-----------------KHNIHKATLDA----IYHAVENLQVIPRSA 118
             S+SS+    +                   +N++   +DA    I   V+   +  +  
Sbjct: 116 DNSLSSSCGWGVKVMSARDIAAGMLRPGTRNYNLNAQAMDATTELIRCIVQERGINVKEV 175

Query: 119 LIDGRSIPED--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHK 166
            ID    PE          P     V  K DS+  S++AAS+ AKVTRD  + I ++
Sbjct: 176 YIDTIGNPEAYQRKLEQIFPSLKITVAKKADSLYPSVSAASVCAKVTRDVALEICYR 232


>gi|116806098|emb|CAL26432.1| CG13690 [Drosophila melanogaster]
          Length = 347

 Score = 39.7 bits (91), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 29/165 (17%)

Query: 28  GIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS----- 78
           G+DE GRG + GP+V  ++   L+ N      G  DSK+++  KR+ ++  I +      
Sbjct: 74  GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133

Query: 79  ----AIISIS----SASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127
               A+  IS    S S     K ++++ ++D+    ++   +  V      +D    PE
Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193

Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRI 163
                     P     V  K DS    ++AASI AKVTRD  +++
Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKV 238


>gi|116806080|emb|CAL26423.1| CG13690 [Drosophila melanogaster]
 gi|116806088|emb|CAL26427.1| CG13690 [Drosophila melanogaster]
 gi|116806100|emb|CAL26433.1| CG13690 [Drosophila melanogaster]
          Length = 347

 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 29/165 (17%)

Query: 28  GIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS----- 78
           G+DE GRG + GP+V  ++   L+ N      G  DSK+++  KR+ ++  I +      
Sbjct: 74  GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133

Query: 79  ----AIISIS----SASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127
               A+  IS    S S     K ++++ ++D+    ++   +  V      +D    PE
Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193

Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRI 163
                     P     V  K DS    ++AASI AKVTRD  +++
Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKV 238


>gi|218281130|ref|ZP_03487665.1| hypothetical protein EUBIFOR_00226 [Eubacterium biforme DSM 3989]
 gi|218217644|gb|EEC91182.1| hypothetical protein EUBIFOR_00226 [Eubacterium biforme DSM 3989]
          Length = 282

 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 89/217 (41%), Gaps = 26/217 (11%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69
           LE    +K     AG DEVG G   GPVVVA+ I+           GI DSK++   K  
Sbjct: 62  LEPATPQKEAQDQAGSDEVGTGDYFGPVVVASCIVTKEAREKLSHLGIQDSKQVDDTKIR 121

Query: 70  ELYEKITS----SAIISISSASHQYIDKHNIHKATLDAIYHAVENL----QVIPRSALID 121
           +L   I      S +I  +S  +   D  N+          A  NL      +P+  +ID
Sbjct: 122 KLAPLIKDVCPHSILIVPNSKYNDMHDSCNMVDMKCRLHNQAYVNLIHKGYTLPKQIVID 181

Query: 122 G-----------RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170
                       +  PE +    F   K ++  L++A ASI+A+        +  +KY D
Sbjct: 182 QFVQEKIYYRYLQGFPEVIRGITFET-KAENKYLAVACASILARNAFLEAWDLMEEKY-D 239

Query: 171 YGFDSHVGYPT-AKHQQVIKEKGPSCIHRLTFRPLRN 206
           + F+   G    A  ++ +K+ G   ++++     +N
Sbjct: 240 FKFEKGAGSKVDACGKEFVKKFGKEKLYQVAKLHFKN 276


>gi|320100359|ref|YP_004175951.1| ribonuclease HII [Desulfurococcus mucosus DSM 2162]
 gi|319752711|gb|ADV64469.1| ribonuclease HII [Desulfurococcus mucosus DSM 2162]
          Length = 255

 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 31/180 (17%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELYEKITSSAIIS 82
           G+DE GRG   G +V+  +I  P+      +  G+ DSK +    R EL+ +I SS +  
Sbjct: 10  GVDEAGRGPFVGDMVIVGVI-GPSRVFESLVSIGLKDSKALEPVARRELFWEILSSNVDI 68

Query: 83  ISSASHQY-IDKHNIHKATLDAIYHAVENL------QVIPRSAL---ID-----GRSIPE 127
           ++     + ID+ N+++     I   ++ L      +  P ++L   +D     G S+ E
Sbjct: 69  VAWLVSPFTIDRGNMNELEYIRICRILKLLSYSRLARSKPGNSLRIYVDEVKGYGESVRE 128

Query: 128 ---DLPCQAFAVI---KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
               +  +   V+   + D+   +++AAS+IAKV RDR + +  K     G     GYP+
Sbjct: 129 CAMRIYGEHVEVVMEPEADARYPAVSAASVIAKVIRDRNIDVLGKITGGLG----SGYPS 184


>gi|195470258|ref|XP_002087425.1| GE16128 [Drosophila yakuba]
 gi|194173526|gb|EDW87137.1| GE16128 [Drosophila yakuba]
          Length = 347

 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 39/188 (20%)

Query: 28  GIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS----- 78
           G+DE GRG + GP+V  ++   L+        G  DSK+++ +KR+ ++  I +      
Sbjct: 74  GVDEAGRGPVLGPMVYGISYCPLESKKALEDLGCADSKQLTEEKRDIIFNDINTKDYATS 133

Query: 79  ----AIISIS----SASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127
               A+  IS    S S     K ++++ ++D+    ++   +  V      +D    PE
Sbjct: 134 CIGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193

Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP------DYG 172
                     P     V  K DS    ++AASI AKVTRD  +++   K+P      D  
Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--KFPEGLVIKDNA 251

Query: 173 FDSHVGYP 180
           F S  GYP
Sbjct: 252 FGS--GYP 257


>gi|223967503|emb|CAR93482.1| CG13690-PA [Drosophila melanogaster]
          Length = 347

 Score = 39.3 bits (90), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 29/165 (17%)

Query: 28  GIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS----- 78
           G+DE GRG + GP+V  ++   L+ N      G  DSK+++  KR+ ++  I +      
Sbjct: 74  GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINAKEYATS 133

Query: 79  ----AIISIS----SASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127
               A+  IS    S S     K ++++ ++D+    ++   +  V      +D    PE
Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193

Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRI 163
                     P     V  K DS    ++AASI AKVTRD  +++
Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKV 238


>gi|328956934|ref|YP_004374320.1| ribonuclease HIII [Carnobacterium sp. 17-4]
 gi|328673258|gb|AEB29304.1| ribonuclease HIII [Carnobacterium sp. 17-4]
          Length = 332

 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 67/162 (41%), Gaps = 38/162 (23%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
           W V G DEVG G+  GP+ V A   D + +      G+ DSK +          +I   A
Sbjct: 115 WSVIGSDEVGTGSYFGPLTVVAAYADHSQLALLKELGVRDSKDMKD-------PEIIRVA 167

Query: 80  IISISSASHQYI----DKHNIHKATL-----------DAIYHAVENLQ-VIPRSALIDGR 123
              I+   H  +    +K+N  + T+            A+ H +E +    P   LID  
Sbjct: 168 KDLITFLPHSLLNVMPEKYNTIQPTMTQGKMKAILHNQALGHVLEKISPQKPDGILIDQF 227

Query: 124 SIP-------EDLPCQ----AFAVIKGDSISLSIAAASIIAK 154
            +P        D P Q     +   KG+   LS+AAASIIA+
Sbjct: 228 ELPATYFKHINDQPKQIKESVYFQTKGEGHHLSVAAASIIAR 269


>gi|282890959|ref|ZP_06299473.1| hypothetical protein pah_c032o041 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499174|gb|EFB41479.1| hypothetical protein pah_c032o041 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 323

 Score = 38.9 bits (89), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 10/78 (12%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDS 60
           + PE+ H        ++N+    GIDE G+G   GP+ +A +  +  +I      G+ DS
Sbjct: 103 TYPEQTH------TTQENLLGRIGIDESGKGDFFGPLCIAGVFAEGQDILRLKALGVRDS 156

Query: 61  KKISHKKREELYEKITSS 78
           K I+ K   ++  KI  S
Sbjct: 157 KTITDKDILKISAKIRES 174


>gi|223967505|emb|CAR93483.1| CG13690-PA [Drosophila melanogaster]
          Length = 347

 Score = 38.9 bits (89), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 29/165 (17%)

Query: 28  GIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS----- 78
           G+DE GRG + GP+V  ++   L+ N      G  DSK+++  KR+ ++  I +      
Sbjct: 74  GVDEAGRGPVLGPMVYGISYCPLESNKALEVLGCADSKQLTEGKRDIIFNDINTKEYATS 133

Query: 79  ----AIISIS----SASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127
               A+  IS    S S     K ++++ ++D+    ++   +  V      +D    PE
Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193

Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRI 163
                     P     V  K DS    ++AASI AKVTRD  +++
Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKV 238


>gi|295112808|emb|CBL31445.1| ribonuclease HIII [Enterococcus sp. 7L76]
 gi|315145573|gb|EFT89589.1| ribonuclease HIII [Enterococcus faecalis TX2141]
 gi|315160341|gb|EFU04358.1| ribonuclease HIII [Enterococcus faecalis TX0645]
          Length = 305

 Score = 38.9 bits (89), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64
           W V G DEVG G+  GPV V A  +D + I      G+ DSK+++
Sbjct: 91  WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKSLGVRDSKELT 135


>gi|257085473|ref|ZP_05579834.1| ribonuclease HIII [Enterococcus faecalis Fly1]
 gi|256993503|gb|EEU80805.1| ribonuclease HIII [Enterococcus faecalis Fly1]
          Length = 306

 Score = 38.9 bits (89), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKIS 64
           W V G DEVG G+  GPV V A  +D + I      G+ DSK+++
Sbjct: 92  WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 136


>gi|315174353|gb|EFU18370.1| ribonuclease HIII [Enterococcus faecalis TX1346]
          Length = 305

 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64
           W V G DEVG G+  GPV V A  +D + I      G+ DSK+++
Sbjct: 91  WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 135


>gi|315027498|gb|EFT39430.1| ribonuclease HIII [Enterococcus faecalis TX2137]
          Length = 305

 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64
           W V G DEVG G+  GPV V A  +D + I      G+ DSK+++
Sbjct: 91  WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 135


>gi|257086614|ref|ZP_05580975.1| ribonuclease HIII [Enterococcus faecalis D6]
 gi|256994644|gb|EEU81946.1| ribonuclease HIII [Enterococcus faecalis D6]
          Length = 306

 Score = 38.9 bits (89), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64
           W V G DEVG G+  GPV V A  +D + I      G+ DSK+++
Sbjct: 92  WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 136


>gi|227518526|ref|ZP_03948575.1| ribonuclease HIII [Enterococcus faecalis TX0104]
 gi|227074008|gb|EEI11971.1| ribonuclease HIII [Enterococcus faecalis TX0104]
          Length = 305

 Score = 38.9 bits (89), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64
           W V G DEVG G+  GPV V A  +D + I      G+ DSK+++
Sbjct: 91  WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 135


>gi|310794509|gb|EFQ29970.1| ribonuclease HII [Glomerella graminicola M1.001]
          Length = 344

 Score = 38.9 bits (89), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 81/196 (41%), Gaps = 46/196 (23%)

Query: 28  GIDEVGRGALAGPVVVAAIILD-PNNIPF-----GINDSKKISHKKREELYEKITS---- 77
           G+DE GRG + GP+V     L  P + P        +DSK ++   R +L   + +    
Sbjct: 70  GVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRETHHFDDSKVLTPAVRSQLMAALCTAGSD 129

Query: 78  ---SAIISISSASHQYID--------KHNIHKATLDAIYHAVE-------NLQVIPRSAL 119
              S   +IS+ S + I          +N++   +DA    ++       N+Q I     
Sbjct: 130 LAESCGFAISALSARDISSGMMRPGANYNLNAQAMDATVELIKGVFAQGVNIQEI----Y 185

Query: 120 IDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK-KYP 169
           +D    P           P     V K  DS+   ++AAS+ AKVTRD  + + +K + P
Sbjct: 186 VDTVGQPAAYQAKLQRFFPATKITVAKKADSLYPCVSAASVCAKVTRDAALEVLYKARAP 245

Query: 170 DY----GFDSHVGYPT 181
           +     G     GYP+
Sbjct: 246 ESVVEEGMAWGSGYPS 261


>gi|255973022|ref|ZP_05423608.1| ribonuclease HIII [Enterococcus faecalis T1]
 gi|257422845|ref|ZP_05599835.1| ribonuclease HIII [Enterococcus faecalis X98]
 gi|255964040|gb|EET96516.1| ribonuclease HIII [Enterococcus faecalis T1]
 gi|257164669|gb|EEU94629.1| ribonuclease HIII [Enterococcus faecalis X98]
          Length = 306

 Score = 38.9 bits (89), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64
           W V G DEVG G+  GPV V A  +D + I      G+ DSK+++
Sbjct: 92  WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 136


>gi|229550247|ref|ZP_04438972.1| ribonuclease HIII [Enterococcus faecalis ATCC 29200]
 gi|300859668|ref|ZP_07105756.1| ribonuclease HIII [Enterococcus faecalis TUSoD Ef11]
 gi|307277609|ref|ZP_07558701.1| ribonuclease HIII [Enterococcus faecalis TX2134]
 gi|312952263|ref|ZP_07771138.1| ribonuclease HIII [Enterococcus faecalis TX0102]
 gi|229304685|gb|EEN70681.1| ribonuclease HIII [Enterococcus faecalis ATCC 29200]
 gi|300850486|gb|EFK78235.1| ribonuclease HIII [Enterococcus faecalis TUSoD Ef11]
 gi|306505874|gb|EFM75052.1| ribonuclease HIII [Enterococcus faecalis TX2134]
 gi|310629647|gb|EFQ12930.1| ribonuclease HIII [Enterococcus faecalis TX0102]
 gi|315153226|gb|EFT97242.1| ribonuclease HIII [Enterococcus faecalis TX0031]
 gi|315155995|gb|EFU00012.1| ribonuclease HIII [Enterococcus faecalis TX0043]
 gi|315157833|gb|EFU01850.1| ribonuclease HIII [Enterococcus faecalis TX0312]
 gi|315166764|gb|EFU10781.1| ribonuclease HIII [Enterococcus faecalis TX1341]
          Length = 305

 Score = 38.9 bits (89), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64
           W V G DEVG G+  GPV V A  +D + I      G+ DSK+++
Sbjct: 91  WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 135


>gi|315151447|gb|EFT95463.1| ribonuclease HIII [Enterococcus faecalis TX0012]
          Length = 305

 Score = 38.9 bits (89), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKIS 64
           W V G DEVG G+  GPV V A  +D + I      G+ DSK+++
Sbjct: 91  WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 135


>gi|257419087|ref|ZP_05596081.1| ribonuclease HIII [Enterococcus faecalis T11]
 gi|257160915|gb|EEU90875.1| ribonuclease HIII [Enterococcus faecalis T11]
          Length = 306

 Score = 38.9 bits (89), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64
           W V G DEVG G+  GPV V A  +D + I      G+ DSK+++
Sbjct: 92  WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKSLGVRDSKELT 136


>gi|315169945|gb|EFU13962.1| ribonuclease HIII [Enterococcus faecalis TX1342]
          Length = 305

 Score = 38.9 bits (89), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64
           W V G DEVG G+  GPV V A  +D + I      G+ DSK+++
Sbjct: 91  WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 135


>gi|256965338|ref|ZP_05569509.1| ribonuclease HIII [Enterococcus faecalis HIP11704]
 gi|257089671|ref|ZP_05584032.1| ribonuclease HIII [Enterococcus faecalis CH188]
 gi|256955834|gb|EEU72466.1| ribonuclease HIII [Enterococcus faecalis HIP11704]
 gi|256998483|gb|EEU85003.1| ribonuclease HIII [Enterococcus faecalis CH188]
          Length = 306

 Score = 38.9 bits (89), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64
           W V G DEVG G+  GPV V A  +D + I      G+ DSK+++
Sbjct: 92  WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 136


>gi|307273446|ref|ZP_07554691.1| ribonuclease HIII [Enterococcus faecalis TX0855]
 gi|307288434|ref|ZP_07568422.1| ribonuclease HIII [Enterococcus faecalis TX0109]
 gi|312904016|ref|ZP_07763184.1| ribonuclease HIII [Enterococcus faecalis TX0635]
 gi|306500605|gb|EFM69934.1| ribonuclease HIII [Enterococcus faecalis TX0109]
 gi|306509973|gb|EFM78998.1| ribonuclease HIII [Enterococcus faecalis TX0855]
 gi|310632492|gb|EFQ15775.1| ribonuclease HIII [Enterococcus faecalis TX0635]
 gi|315147746|gb|EFT91762.1| ribonuclease HIII [Enterococcus faecalis TX4244]
 gi|315165480|gb|EFU09497.1| ribonuclease HIII [Enterococcus faecalis TX1302]
 gi|315578363|gb|EFU90554.1| ribonuclease HIII [Enterococcus faecalis TX0630]
          Length = 305

 Score = 38.9 bits (89), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64
           W V G DEVG G+  GPV V A  +D + I      G+ DSK+++
Sbjct: 91  WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 135


>gi|29375836|ref|NP_814990.1| ribonuclease HIII [Enterococcus faecalis V583]
 gi|227553052|ref|ZP_03983101.1| ribonuclease HIII [Enterococcus faecalis HH22]
 gi|81585389|sp|Q835V5|RNH3_ENTFA RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|29343298|gb|AAO81060.1| ribonuclease HIII [Enterococcus faecalis V583]
 gi|227177795|gb|EEI58767.1| ribonuclease HIII [Enterococcus faecalis HH22]
 gi|315575679|gb|EFU87870.1| ribonuclease HIII [Enterococcus faecalis TX0309B]
 gi|315579877|gb|EFU92068.1| ribonuclease HIII [Enterococcus faecalis TX0309A]
          Length = 305

 Score = 38.9 bits (89), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64
           W V G DEVG G+  GPV V A  +D + I      G+ DSK+++
Sbjct: 91  WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKSLGVRDSKELT 135


>gi|307279081|ref|ZP_07560139.1| ribonuclease HIII [Enterococcus faecalis TX0860]
 gi|306504206|gb|EFM73418.1| ribonuclease HIII [Enterococcus faecalis TX0860]
          Length = 305

 Score = 38.9 bits (89), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64
           W V G DEVG G+  GPV V A  +D + I      G+ DSK+++
Sbjct: 91  WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 135


>gi|256958755|ref|ZP_05562926.1| ribonuclease HIII [Enterococcus faecalis DS5]
 gi|257078784|ref|ZP_05573145.1| ribonuclease HIII [Enterococcus faecalis JH1]
 gi|256949251|gb|EEU65883.1| ribonuclease HIII [Enterococcus faecalis DS5]
 gi|256986814|gb|EEU74116.1| ribonuclease HIII [Enterococcus faecalis JH1]
          Length = 306

 Score = 38.9 bits (89), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64
           W V G DEVG G+  GPV V A  +D + I      G+ DSK+++
Sbjct: 92  WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 136


>gi|255976061|ref|ZP_05426647.1| ribonuclease HIII [Enterococcus faecalis T2]
 gi|255968933|gb|EET99555.1| ribonuclease HIII [Enterococcus faecalis T2]
          Length = 306

 Score = 38.9 bits (89), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64
           W V G DEVG G+  GPV V A  +D + I      G+ DSK+++
Sbjct: 92  WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 136


>gi|294780117|ref|ZP_06745490.1| ribonuclease HIII [Enterococcus faecalis PC1.1]
 gi|307268535|ref|ZP_07549908.1| ribonuclease HIII [Enterococcus faecalis TX4248]
 gi|294452792|gb|EFG21221.1| ribonuclease HIII [Enterococcus faecalis PC1.1]
 gi|306515131|gb|EFM83673.1| ribonuclease HIII [Enterococcus faecalis TX4248]
 gi|315034079|gb|EFT46011.1| ribonuclease HIII [Enterococcus faecalis TX0017]
 gi|315036747|gb|EFT48679.1| ribonuclease HIII [Enterococcus faecalis TX0027]
 gi|323480498|gb|ADX79937.1| ribonuclease HIII [Enterococcus faecalis 62]
          Length = 305

 Score = 38.9 bits (89), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64
           W V G DEVG G+  GPV V A  +D + I      G+ DSK+++
Sbjct: 91  WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 135


>gi|256962140|ref|ZP_05566311.1| ribonuclease HIII [Enterococcus faecalis Merz96]
 gi|256952636|gb|EEU69268.1| ribonuclease HIII [Enterococcus faecalis Merz96]
          Length = 306

 Score = 38.9 bits (89), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64
           W V G DEVG G+  GPV V A  +D + I      G+ DSK+++
Sbjct: 92  WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 136


>gi|256618846|ref|ZP_05475692.1| ribonuclease HIII [Enterococcus faecalis ATCC 4200]
 gi|256598373|gb|EEU17549.1| ribonuclease HIII [Enterococcus faecalis ATCC 4200]
          Length = 306

 Score = 38.9 bits (89), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64
           W V G DEVG G+  GPV V A  +D + I      G+ DSK+++
Sbjct: 92  WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 136


>gi|229546057|ref|ZP_04434782.1| ribonuclease HIII [Enterococcus faecalis TX1322]
 gi|256852909|ref|ZP_05558279.1| ribonuclease HIII [Enterococcus faecalis T8]
 gi|307291247|ref|ZP_07571131.1| ribonuclease HIII [Enterococcus faecalis TX0411]
 gi|229308830|gb|EEN74817.1| ribonuclease HIII [Enterococcus faecalis TX1322]
 gi|256711368|gb|EEU26406.1| ribonuclease HIII [Enterococcus faecalis T8]
 gi|306497478|gb|EFM67011.1| ribonuclease HIII [Enterococcus faecalis TX0411]
 gi|315030923|gb|EFT42855.1| ribonuclease HIII [Enterococcus faecalis TX4000]
          Length = 305

 Score = 38.9 bits (89), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64
           W V G DEVG G+  GPV V A  +D + I      G+ DSK+++
Sbjct: 91  WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 135


>gi|315658551|ref|ZP_07911423.1| ribonuclease HIII [Staphylococcus lugdunensis M23590]
 gi|315496880|gb|EFU85203.1| ribonuclease HIII [Staphylococcus lugdunensis M23590]
          Length = 310

 Score = 38.9 bits (89), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 99/211 (46%), Gaps = 32/211 (15%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-- 77
           +   G DE G G   GP+ V A  +  +++      G++DSKK++  K  +L E++ +  
Sbjct: 91  YDCIGSDEAGSGDYFGPLTVCAAYVTQSHVAILKTLGVDDSKKLTDTKIIDLAEQLVTFI 150

Query: 78  -SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL--QVIPRSA---LIDGRSIPEDL 129
             +++++ +  +         +  + A+ H  A++N+  ++ P +    +ID  +  E  
Sbjct: 151 PHSLLTLDNIKYNERQALGWSQVKMKAVLHNEAIKNVTQKIHPDNIDYIVIDQFAQREVY 210

Query: 130 PCQAFAVI----------KGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
              A + +          KG+S SL+IAAASII++       D+L R  H + P  G  +
Sbjct: 211 QHYALSALPFPEKTKFETKGESKSLAIAAASIISRYAFVKYMDQLARKMHCEIPK-GAGN 269

Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
            V    AK   +I + G + +  ++ +  +N
Sbjct: 270 KVDLVAAK---IIDKSGINKLDSISKKHFKN 297


>gi|293383165|ref|ZP_06629082.1| ribonuclease HIII [Enterococcus faecalis R712]
 gi|293387681|ref|ZP_06632226.1| ribonuclease HIII [Enterococcus faecalis S613]
 gi|312899345|ref|ZP_07758678.1| ribonuclease HIII [Enterococcus faecalis TX0470]
 gi|312907246|ref|ZP_07766237.1| ribonuclease HIII [Enterococcus faecalis DAPTO 512]
 gi|312909864|ref|ZP_07768712.1| ribonuclease HIII [Enterococcus faecalis DAPTO 516]
 gi|291079504|gb|EFE16868.1| ribonuclease HIII [Enterococcus faecalis R712]
 gi|291082870|gb|EFE19833.1| ribonuclease HIII [Enterococcus faecalis S613]
 gi|310626274|gb|EFQ09557.1| ribonuclease HIII [Enterococcus faecalis DAPTO 512]
 gi|311289822|gb|EFQ68378.1| ribonuclease HIII [Enterococcus faecalis DAPTO 516]
 gi|311293496|gb|EFQ72052.1| ribonuclease HIII [Enterococcus faecalis TX0470]
 gi|327534888|gb|AEA93722.1| ribonuclease H [Enterococcus faecalis OG1RF]
          Length = 305

 Score = 38.9 bits (89), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64
           W V G DEVG G+  GPV V A  +D + I      G+ DSK+++
Sbjct: 91  WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 135


>gi|289551055|ref|YP_003471959.1| Ribonuclease HIII [Staphylococcus lugdunensis HKU09-01]
 gi|289180587|gb|ADC87832.1| Ribonuclease HIII [Staphylococcus lugdunensis HKU09-01]
          Length = 310

 Score = 38.9 bits (89), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 99/211 (46%), Gaps = 32/211 (15%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-- 77
           +   G DE G G   GP+ V A  +  +++      G++DSKK++  K  +L E++ +  
Sbjct: 91  YDCIGSDEAGSGDYFGPLTVCAAYVTQSHVAILKTLGVDDSKKLTDTKIIDLAEQLVTFI 150

Query: 78  -SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL--QVIPRSA---LIDGRSIPEDL 129
             +++++ +  +         +  + A+ H  A++N+  ++ P +    +ID  +  E  
Sbjct: 151 PHSLLTLDNIKYNERQALGWSQVKMKAVLHNEAIKNVTQKIHPDNIDYIVIDQFAQREVY 210

Query: 130 PCQAFAVI----------KGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175
              A + +          KG+S SL+IAAASII++       D+L R  H + P  G  +
Sbjct: 211 QHYALSALPFPEKTKFETKGESKSLAIAAASIISRYAFVKYMDQLARKMHCEIPK-GAGN 269

Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
            V    AK   +I + G + +  ++ +  +N
Sbjct: 270 KVDLVAAK---IIDKSGINKLDSISKKHFKN 297


>gi|257415885|ref|ZP_05592879.1| ribonuclease HIII [Enterococcus faecalis AR01/DG]
 gi|257157713|gb|EEU87673.1| ribonuclease HIII [Enterococcus faecalis ARO1/DG]
          Length = 306

 Score = 38.9 bits (89), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64
           W V G DEVG G+  GPV V A  +D + I      G+ DSK+++
Sbjct: 92  WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 136


>gi|254443118|ref|ZP_05056594.1| ribonuclease HIII [Verrucomicrobiae bacterium DG1235]
 gi|198257426|gb|EDY81734.1| ribonuclease HIII [Verrucomicrobiae bacterium DG1235]
          Length = 334

 Score = 38.9 bits (89), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS 82
           AG+DE G+G L GPVV A +I D  +I      GI DSK I+  +  +L + I  +  +S
Sbjct: 109 AGMDESGKGDLFGPVVTACVIADKVHIDQWVKDGIRDSKTITDSRILKLDKIIRGTKGVS 168

Query: 83  ISS 85
           + +
Sbjct: 169 VET 171


>gi|112490233|pdb|2D0A|A Chain A, Crystal Structure Of Bst-Rnase Hiii
 gi|112490235|pdb|2D0B|A Chain A, Crystal Structure Of Bst-Rnase Hiii In Complex With Mg2+
 gi|112490237|pdb|2D0C|A Chain A, Crystal Structure Of Bst-Rnase Hiii In Complex With Mn2+
 gi|47522551|dbj|BAD20196.1| ribonuclease HIII [Geobacillus stearothermophilus]
          Length = 310

 Score = 38.9 bits (89), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 33/156 (21%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS---AI 80
           G DEVG G   GP+VVAA  +D  +I      G+ DSK+++ +  + +   I  +   A+
Sbjct: 95  GSDEVGTGDYFGPIVVAAAYVDRPHIAKIAALGVKDSKQLNDEAIKRIAPAIMETVPHAV 154

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVI-------PRSALID------------ 121
             + +  +    +  + +  + A+ H    ++++       P + +ID            
Sbjct: 155 TVLDNPQYNRWQRSGMPQTKMKALLHNRTLVKLVDAIAPAEPEAIIIDEFLKRDSYFRYL 214

Query: 122 ---GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
               R I E + C    + K +S+ +S+AAASIIA+
Sbjct: 215 SDEDRIIRERVHC----LPKAESVHVSVAAASIIAR 246


>gi|256762264|ref|ZP_05502844.1| ribonuclease HIII [Enterococcus faecalis T3]
 gi|256683515|gb|EEU23210.1| ribonuclease HIII [Enterococcus faecalis T3]
          Length = 306

 Score = 38.9 bits (89), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64
           W V G DEVG G+  GPV V A  +D + I      G+ DSK+++
Sbjct: 92  WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 136


>gi|149012155|ref|ZP_01833264.1| ribonuclease HIII [Streptococcus pneumoniae SP19-BS75]
 gi|147763757|gb|EDK70691.1| ribonuclease HIII [Streptococcus pneumoniae SP19-BS75]
          Length = 293

 Score = 38.9 bits (89), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKK 67
           ++L    R +N+ P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K
Sbjct: 67  YQLVEENRGQNL-PLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQK 125

Query: 68  REE----LYEKITSSAIISISSASHQYI-DKHN 95
             +    L EKI   A++   S  ++ I D++N
Sbjct: 126 IRQIAPILKEKIQHQALLLSPSKYNEVIGDRYN 158


>gi|257082772|ref|ZP_05577133.1| ribonuclease HIII [Enterococcus faecalis E1Sol]
 gi|256990802|gb|EEU78104.1| ribonuclease HIII [Enterococcus faecalis E1Sol]
          Length = 306

 Score = 38.5 bits (88), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64
           W V G DEVG G+  GPV V A  +D + I      G+ DSK+++
Sbjct: 92  WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 136


>gi|329577099|gb|EGG58572.1| ribonuclease HIII [Enterococcus faecalis TX1467]
          Length = 289

 Score = 38.5 bits (88), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKIS 64
           W V G DEVG G+  GPV V A  +D + I      G+ DSK+++
Sbjct: 75  WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 119


>gi|225858257|ref|YP_002739767.1| ribonuclease HIII [Streptococcus pneumoniae 70585]
 gi|254808014|sp|C1C5E1|RNH3_STRP7 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|225720842|gb|ACO16696.1| ribonuclease hiii [Streptococcus pneumoniae 70585]
          Length = 293

 Score = 38.5 bits (88), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVATFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|223936443|ref|ZP_03628355.1| ribonuclease HIII [bacterium Ellin514]
 gi|223894961|gb|EEF61410.1| ribonuclease HIII [bacterium Ellin514]
          Length = 329

 Score = 38.5 bits (88), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 37/185 (20%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKR-EELYEKITS-- 77
           P  G+DE G+G   GP+ VA + ++ + +      GI DSK IS  K+  EL E I    
Sbjct: 93  PRLGVDESGKGDFFGPLCVAGVYVNESVVRAWKEAGIRDSKNISSDKKIRELAELIRETP 152

Query: 78  ---SAIISISSASHQYIDKHNIHKATLDAIYHA--VENL----QVI---PRSALIDGRSI 125
              + ++ I + ++  +        TL A  HA  +ENL    Q++   P  A+ D  + 
Sbjct: 153 GCVTTVVPIGNEAYNRLYAKMRSVNTLLAWGHARVIENLMGRQQMMKPPPIRAISDQFAA 212

Query: 126 PEDLPCQAFAVIKGDSISL----------SIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
            +D   +A   + G  + L          ++AAASI+A   RD  +         YG   
Sbjct: 213 SKDTVAKALMNL-GRQVELVQRHKAEEDIAVAAASILA---RDEFVSRLGTLEKQYG--- 265

Query: 176 HVGYP 180
            +G+P
Sbjct: 266 -MGFP 269


>gi|229823968|ref|ZP_04450037.1| hypothetical protein GCWU000282_01272 [Catonella morbi ATCC 51271]
 gi|229786322|gb|EEP22436.1| hypothetical protein GCWU000282_01272 [Catonella morbi ATCC 51271]
          Length = 319

 Score = 38.5 bits (88), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 31/160 (19%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISH--------KKREEL 71
           W + G DEVG G+  G + V A+ LD  +       G+ DSK ++         K R+ L
Sbjct: 98  WTIIGSDEVGNGSYFGALTVCAVYLDAGDRAKIEGLGVKDSKLLTDAQILDLAPKLRQVL 157

Query: 72  YEKITSSAIISISSASHQY------IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
             ++T  +    + A+         +  HN     L A   A + L +  +  LID  + 
Sbjct: 158 THELTICSPAKYNEANKTRNANAIKVSLHNFTIQKLLAKLSARQKLAL--QGILIDEFTS 215

Query: 126 PED-----------LPCQAFAVIKGDSISLSIAAASIIAK 154
           P++           L    +   KG+S  L++A ASIIA+
Sbjct: 216 PQNYFNYLKKEAHPLTKGLYFAEKGESAHLAVACASIIAR 255


>gi|154318955|ref|XP_001558795.1| hypothetical protein BC1G_02429 [Botryotinia fuckeliana B05.10]
 gi|150856860|gb|EDN32052.1| hypothetical protein BC1G_02429 [Botryotinia fuckeliana B05.10]
          Length = 1493

 Score = 38.1 bits (87), Expect = 0.69,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 75/183 (40%), Gaps = 32/183 (17%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI------PFGINDSKKISHKKREELYEKITSS--- 78
           GIDE GRG + GP+V     L               +DSK ++   R EL EK+ +    
Sbjct: 70  GIDEAGRGPVLGPMVYGLFYLPLPLSDPLLRNTHHFDDSKVLTPTVRSELMEKLCTPGSD 129

Query: 79  -------AIISISS----ASHQYIDKHNIHKATLD---AIYHAVENLQVIPRSALIDG-- 122
                  A+  +S+    A+      +N++   +D   A+   V +  V  +   ID   
Sbjct: 130 LYTQCGWAVDVMSARDIGANMMKPATYNLNAQAMDSTIALIQGVMDKGVNVKEIYIDALG 189

Query: 123 ------RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
                 + +    P     V  K DS+   ++AAS+ AKVTRD  +   ++ Y +   D 
Sbjct: 190 NTVTYQKKLERIFPTAQITVAKKADSLYPCVSAASVCAKVTRDAALESLYESYMNKDGDQ 249

Query: 176 HVG 178
            +G
Sbjct: 250 KMG 252


>gi|218905781|ref|YP_002453615.1| ribonuclease HIII [Bacillus cereus AH820]
 gi|218538277|gb|ACK90675.1| ribonuclease HIII [Bacillus cereus AH820]
          Length = 177

 Score = 38.1 bits (87), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 16/107 (14%)

Query: 5   SIPERPHFELEAMVREKNMWP--------VAGIDEVGRGALAGPVVVAAIILDPNNIP-- 54
           ++P+ P   ++  V      P        + G DEVG G   GP+ V A+ +D   IP  
Sbjct: 68  TVPQTPKIAVKKSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLL 127

Query: 55  --FGINDSKKISHKK----REELYEKITSSAIISISSASHQYIDKHN 95
              G+ DSK ++ ++     ++L   +  S+++  +   ++  DK N
Sbjct: 128 KELGVKDSKNLNDEQITAIAKQLLHVVPYSSLVLHNEKYNELFDKGN 174


>gi|326431468|gb|EGD77038.1| ribonuclease [Salpingoeca sp. ATCC 50818]
          Length = 421

 Score = 38.1 bits (87), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 75/187 (40%), Gaps = 33/187 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAII----LDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
           + G+DE GRG + GP+V         ++      G  DSK +  ++RE L+ ++ S ++ 
Sbjct: 127 ILGVDEAGRGPVCGPMVYGVAFAPKPMEKTLKNMGFTDSKVVKEEERERLFTEMKSGSLH 186

Query: 81  --------------ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
                         IS    + Q    + +   T   +     +  V   +  +D  ++ 
Sbjct: 187 GKMGWKVHSLSPNTISTGMLARQKYSLNELSHDTCIGLIRRCLDQGVNLEAVYVD--TVG 244

Query: 127 EDLPCQA-----FAVI------KGDSISLSIAAASIIAKVTRDRLMRIA-HKKYPDYGFD 174
            D   QA     F  +      K DS  + ++AASI AKV RD ++    H +      +
Sbjct: 245 PDTVYQAKLQGIFPQLKITVSKKADSKYVIVSAASICAKVVRDHVLSAWRHPERIGANTE 304

Query: 175 SHVGYPT 181
              GYP+
Sbjct: 305 YGCGYPS 311


>gi|309790298|ref|ZP_07684866.1| ribonuclease HIII [Oscillochloris trichoides DG6]
 gi|308227686|gb|EFO81346.1| ribonuclease HIII [Oscillochloris trichoides DG6]
          Length = 312

 Score = 38.1 bits (87), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 25/150 (16%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS------ 77
           G+DE G+G   GP+VVAA+ +D          G+ DSK +      +L ++I        
Sbjct: 99  GMDESGKGDWYGPLVVAAVYVDAQTEATLQQAGVRDSKLVDQATLPKLVQRIEQLVPATA 158

Query: 78  --SAIISISSASHQYIDKHNI-------HKATLDAIYHAVENLQVI-----PRSALIDGR 123
               +++ S  + +Y + +N+       +  T   +  A    +V+      R+  +DG 
Sbjct: 159 RYVTVLAPSDYNRRYAESNNVNILLAELYAETATRVCQATGCKRVVCDQFAQRTERLDGT 218

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIA 153
                LP +   +   ++ S+++AAASI+A
Sbjct: 219 FTQAGLP-RPTQMHHAEAQSIAVAAASILA 247


>gi|323303245|gb|EGA57043.1| Rnh201p [Saccharomyces cerevisiae FostersB]
          Length = 307

 Score = 38.1 bits (87), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 6/66 (9%)

Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAI-----ILDPNNIP-FGINDSKKISHKKRE 69
          A++ +K+   + GIDE GRG + GP+V A         D   IP +  +DSKK++   R 
Sbjct: 25 ALLEQKDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIRR 84

Query: 70 ELYEKI 75
           L+ KI
Sbjct: 85 MLFSKI 90


>gi|256274456|gb|EEU09358.1| Rnh201p [Saccharomyces cerevisiae JAY291]
          Length = 307

 Score = 38.1 bits (87), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 6/66 (9%)

Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAI-----ILDPNNIP-FGINDSKKISHKKRE 69
          A++ +K+   + GIDE GRG + GP+V A         D   IP +  +DSKK++   R 
Sbjct: 25 ALLEQKDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIRR 84

Query: 70 ELYEKI 75
           L+ KI
Sbjct: 85 MLFSKI 90


>gi|300175420|emb|CBK20731.2| unnamed protein product [Blastocystis hominis]
          Length = 539

 Score = 38.1 bits (87), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 7/87 (8%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG + GP+V AA     +        G +DSKK +  +R+   + I  +  I
Sbjct: 452 IVGIDEAGRGPVVGPMVYAAAYWAKSKNEEISNLGFDDSKKFTSGQRDGFRKTIDETGSI 511

Query: 82  S--ISSASHQYIDKHNIHKA-TLDAIY 105
              I S S + I  + +    TLD+ Y
Sbjct: 512 GYLIRSLSPKEISANMLQTYPTLDSDY 538


>gi|260946247|ref|XP_002617421.1| hypothetical protein CLUG_02865 [Clavispora lusitaniae ATCC 42720]
 gi|238849275|gb|EEQ38739.1| hypothetical protein CLUG_02865 [Clavispora lusitaniae ATCC 42720]
          Length = 345

 Score = 38.1 bits (87), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 74/185 (40%), Gaps = 38/185 (20%)

Query: 11  HFELEAMVREKNMWPVA-GIDEVGRGALAGPVV--VAAIILDPNN---IPFGINDSKKIS 64
           H E+   + E    PV  G+DE GRG + GP+V  ++  + D  +     +G  DSK + 
Sbjct: 57  HSEIPEAITEDPKGPVVLGVDEAGRGPVLGPMVYGISYCLRDYQDHLKKKYGFADSKTLK 116

Query: 65  HKKREELYEKIT----------------------SSAIISISSASHQYIDKHNIHKATLD 102
              R+EL++ I                       S+ ++  +  +  Y      H  T+ 
Sbjct: 117 DSTRQELFQLIDNEKHELHKNVGWATCTMTAKDISNGMLRSALGAGSYNLNEQAHDTTIQ 176

Query: 103 AIYHAVENLQVIPRSALIDGRSIP--------EDLPCQAFAVI-KGDSISLSIAAASIIA 153
            I   + +  V  R   +D    P        +  P     V  K DSI   ++ AS++A
Sbjct: 177 LIKDVLLS-GVNVREIFVDTVGPPVSYQAKLKKHFPSIDITVTKKADSIYPIVSTASVVA 235

Query: 154 KVTRD 158
           KVTRD
Sbjct: 236 KVTRD 240


>gi|313889744|ref|ZP_07823386.1| ribonuclease HIII [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121789|gb|EFR44886.1| ribonuclease HIII [Streptococcus pseudoporcinus SPIN 20026]
          Length = 305

 Score = 38.1 bits (87), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 5/50 (10%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKIS-HKKRE 69
           P+ G DEVG G+  G + V A  ++P++ P+    G+NDSK ++ HK R+
Sbjct: 88  PLIGSDEVGNGSYFGGLAVVASYVEPSDHPYLKELGVNDSKTLNDHKIRQ 137


>gi|125625302|ref|YP_001033785.1| ribonuclease HIII [Lactococcus lactis subsp. cremoris MG1363]
 gi|166226671|sp|A2RP65|RNH3_LACLM RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|124494110|emb|CAL99111.1| RnhA protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300072114|gb|ADJ61514.1| ribonuclease HIII [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 292

 Score = 38.1 bits (87), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 93/214 (43%), Gaps = 36/214 (16%)

Query: 16  AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKK---- 67
           A V  K    + G DEVG G+  G ++V A  +  N++ F    G+ DSKK++ +K    
Sbjct: 68  AQVVPKKQTNLIGTDEVGNGSYFGGLMVTASFVSDNHLKFLKEMGVADSKKLTDEKICQI 127

Query: 68  REELYEKITSSAII--------SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
             +L E+I   A++         I+S  +    K  +H     AIY   + L   P S +
Sbjct: 128 APKLIEEIPHVALVVEPEKYNEVIASGYNAVSIKVALHN---QAIYLLEKQLGSQPESIV 184

Query: 120 IDGR----------SIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
           ID            S  ++ P     ++ K +   L++A +SII   +R + +    K  
Sbjct: 185 IDAFTTEANYKKYVSAEKNHPLTNITLLTKAEDQFLAVAVSSII---SRYKFLENLKKLS 241

Query: 169 PDYGFD--SHVGYPTAK-HQQVIKEKGPSCIHRL 199
            + GF   S  G  + K   Q+IK KG   ++ L
Sbjct: 242 KESGFTLPSGAGNLSDKVAAQIIKSKGIDALNHL 275


>gi|73916752|gb|AAZ93244.1| RNase HII [Streptococcus pneumoniae]
          Length = 291

 Score = 38.1 bits (87), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|73916702|gb|AAZ93219.1| RNase HII [Streptococcus pneumoniae]
          Length = 291

 Score = 38.1 bits (87), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|73662964|ref|YP_301745.1| ribonuclease HIII [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123642317|sp|Q49WQ7|RNH3_STAS1 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|72495479|dbj|BAE18800.1| putative ribonuclease HIII [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 310

 Score = 38.1 bits (87), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
           N +   G DE G G   GP+ V A  +   N+      G++DSKK++  K  EL E++ +
Sbjct: 88  NQFQCIGSDEAGSGDYFGPLTVCAAYVSHKNVQILKALGVDDSKKLTDTKIVELAEQLVT 147


>gi|325969836|ref|YP_004246028.1| ribonuclease HII [Vulcanisaeta moutnovskia 768-28]
 gi|323709039|gb|ADY02526.1| ribonuclease HII [Vulcanisaeta moutnovskia 768-28]
          Length = 198

 Score = 38.1 bits (87), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 36/152 (23%)

Query: 55  FGINDSKKISHKKREELYEKITSSAIISISSAS-------HQYIDKHNIH----KATLDA 103
            G+ DSK++S + R  L+  I   +I++             +Y++ + ++    + T+  
Sbjct: 17  IGVKDSKELSPESRSRLF--IILKSILNYIDYEIIEPVIIDRYVNMNALNILEVEVTIKL 74

Query: 104 IYHAVENLQVIPRSALIDGRSIPEDLP--------------CQAFAVIKGDSISLSIAAA 149
           I  A+ N+QV   +  ID    P+  P                  A+ K D +   ++AA
Sbjct: 75  INKALSNIQV--HTIYIDS---PDPKPERFRDMIMERVGGNVNVIAMNKADKLIPVVSAA 129

Query: 150 SIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           SI+AKV RD ++   H+++ D+G     GYP+
Sbjct: 130 SIVAKVVRDSIIERLHREFGDFG----SGYPS 157


>gi|168482640|ref|ZP_02707592.1| ribonuclease hiii [Streptococcus pneumoniae CDC1873-00]
 gi|172043660|gb|EDT51706.1| ribonuclease hiii [Streptococcus pneumoniae CDC1873-00]
 gi|332203574|gb|EGJ17641.1| ribonuclease HIII [Streptococcus pneumoniae GA47368]
          Length = 293

 Score = 38.1 bits (87), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|148996807|ref|ZP_01824525.1| ribonuclease HIII [Streptococcus pneumoniae SP11-BS70]
 gi|168576877|ref|ZP_02722727.1| ribonuclease hiii [Streptococcus pneumoniae MLV-016]
 gi|307067052|ref|YP_003876018.1| ribonuclease HIII [Streptococcus pneumoniae AP200]
 gi|147757382|gb|EDK64421.1| ribonuclease HIII [Streptococcus pneumoniae SP11-BS70]
 gi|183577460|gb|EDT97988.1| ribonuclease hiii [Streptococcus pneumoniae MLV-016]
 gi|306408589|gb|ADM84016.1| Ribonuclease HIII [Streptococcus pneumoniae AP200]
          Length = 293

 Score = 38.1 bits (87), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|119196321|ref|XP_001248764.1| hypothetical protein CIMG_02535 [Coccidioides immitis RS]
          Length = 353

 Score = 38.1 bits (87), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 41/180 (22%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF---------GINDSKKISHKKREELYEKIT 76
           V G+DE GRG + GP+V +A  L    +P            NDSK ++   R  L   + 
Sbjct: 70  VLGVDEAGRGPVLGPMVYSAFYLP---MPLHHSLLAEEHQFNDSKVLTPGIRSNLMRLLC 126

Query: 77  S-------SAIISISSASHQYIDK---------HNIHKATLDA----IYHAVENLQVIPR 116
           +       S   +I   S + I           +N++   +DA    I   VE   V  +
Sbjct: 127 TPDHPLHESCGWAIKLLSARDISSGMQRPGAAVYNLNAQAMDATVEIIRGVVEERGVDVK 186

Query: 117 SALIDGRSIPED--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
              ID    P+          P     V  K D++   ++AAS+ AKVTRD  + I +++
Sbjct: 187 EVYIDTIGNPQTYQKKLERIFPSLKITVAKKADALFPCVSAASVCAKVTRDAALEICYEE 246


>gi|73916788|gb|AAZ93262.1| RNase HII [Streptococcus pneumoniae]
          Length = 291

 Score = 38.1 bits (87), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|73916714|gb|AAZ93225.1| RNase HII [Streptococcus pneumoniae]
 gi|73916734|gb|AAZ93235.1| RNase HII [Streptococcus pneumoniae]
          Length = 291

 Score = 38.1 bits (87), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|194398393|ref|YP_002037085.1| ribonuclease HIII [Streptococcus pneumoniae G54]
 gi|226741382|sp|B5E7E5|RNH3_STRP4 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|194358060|gb|ACF56508.1| ribonuclease HIII [Streptococcus pneumoniae G54]
 gi|332204430|gb|EGJ18495.1| ribonuclease HIII [Streptococcus pneumoniae GA47901]
          Length = 293

 Score = 38.1 bits (87), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|168494560|ref|ZP_02718703.1| ribonuclease hiii [Streptococcus pneumoniae CDC3059-06]
 gi|307126617|ref|YP_003878648.1| ribonuclease hiii [Streptococcus pneumoniae 670-6B]
 gi|183575525|gb|EDT96053.1| ribonuclease hiii [Streptococcus pneumoniae CDC3059-06]
 gi|306483679|gb|ADM90548.1| ribonuclease hiii [Streptococcus pneumoniae 670-6B]
          Length = 293

 Score = 38.1 bits (87), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|73916708|gb|AAZ93222.1| RNase HII [Streptococcus pneumoniae]
          Length = 291

 Score = 38.1 bits (87), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|73916712|gb|AAZ93224.1| RNase HII [Streptococcus pneumoniae]
 gi|73916728|gb|AAZ93232.1| RNase HII [Streptococcus pneumoniae]
 gi|73916730|gb|AAZ93233.1| RNase HII [Streptococcus pneumoniae]
          Length = 291

 Score = 38.1 bits (87), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|225853979|ref|YP_002735491.1| ribonuclease HIII [Streptococcus pneumoniae JJA]
 gi|254808017|sp|C1CCH0|RNH3_STRZJ RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|225722438|gb|ACO18291.1| ribonuclease hiii [Streptococcus pneumoniae JJA]
          Length = 293

 Score = 37.7 bits (86), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|149023691|ref|ZP_01836171.1| ribonuclease HIII [Streptococcus pneumoniae SP23-BS72]
 gi|147929628|gb|EDK80620.1| ribonuclease HIII [Streptococcus pneumoniae SP23-BS72]
          Length = 293

 Score = 37.7 bits (86), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|148983801|ref|ZP_01817120.1| ribonuclease HIII [Streptococcus pneumoniae SP3-BS71]
 gi|149003498|ref|ZP_01828372.1| ribonuclease HIII [Streptococcus pneumoniae SP14-BS69]
 gi|149008008|ref|ZP_01831565.1| ribonuclease HIII [Streptococcus pneumoniae SP18-BS74]
 gi|237650379|ref|ZP_04524631.1| ribonuclease HIII [Streptococcus pneumoniae CCRI 1974]
 gi|237822067|ref|ZP_04597912.1| ribonuclease HIII [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758434|gb|EDK65433.1| ribonuclease HIII [Streptococcus pneumoniae SP14-BS69]
 gi|147760520|gb|EDK67496.1| ribonuclease HIII [Streptococcus pneumoniae SP18-BS74]
 gi|147923948|gb|EDK75060.1| ribonuclease HIII [Streptococcus pneumoniae SP3-BS71]
 gi|301799504|emb|CBW32051.1| ribonuclease HIII [Streptococcus pneumoniae OXC141]
 gi|332076846|gb|EGI87308.1| ribonuclease HIII [Streptococcus pneumoniae GA17545]
 gi|332077687|gb|EGI88148.1| ribonuclease HIII [Streptococcus pneumoniae GA41301]
          Length = 293

 Score = 37.7 bits (86), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|15900322|ref|NP_344926.1| ribonuclease HIII [Streptococcus pneumoniae TIGR4]
 gi|111657623|ref|ZP_01408357.1| hypothetical protein SpneT_02001177 [Streptococcus pneumoniae
           TIGR4]
 gi|18314321|sp|O07874|RNH3_STRPN RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|14971871|gb|AAK74566.1| ribonuclease HIII [Streptococcus pneumoniae TIGR4]
          Length = 293

 Score = 37.7 bits (86), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|303322466|ref|XP_003071226.1| ribonuclease H2 subunit A, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240110925|gb|EER29081.1| ribonuclease H2 subunit A, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|320040565|gb|EFW22498.1| ribonuclease HI large subunit [Coccidioides posadasii str.
           Silveira]
          Length = 353

 Score = 37.7 bits (86), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 41/180 (22%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF---------GINDSKKISHKKREELYEKIT 76
           V G+DE GRG + GP+V +A  L    +P            NDSK ++   R  L   + 
Sbjct: 70  VLGVDEAGRGPVLGPMVYSAFYLP---MPLHHSLLAEEHQFNDSKVLTPGIRSNLMRLLC 126

Query: 77  S-------SAIISISSASHQYIDK---------HNIHKATLDA----IYHAVENLQVIPR 116
           +       S   +I   S + I           +N++   +DA    I   VE   V  +
Sbjct: 127 TPDHPLHESCGWAIKLLSARDISSGMQRPGAAVYNLNAQAMDATVEIIRGVVEERGVDVK 186

Query: 117 SALIDGRSIPED--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
              ID    P+          P     V  K D++   ++AAS+ AKVTRD  + I +++
Sbjct: 187 EVYIDTIGNPQTYQKKLERIFPSLKITVAKKADALFPCVSAASVCAKVTRDAALEICYEE 246


>gi|73916716|gb|AAZ93226.1| RNase HII [Streptococcus pneumoniae]
 gi|73916738|gb|AAZ93237.1| RNase HII [Streptococcus pneumoniae]
 gi|73916780|gb|AAZ93258.1| RNase HII [Streptococcus pneumoniae]
          Length = 291

 Score = 37.7 bits (86), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|73916704|gb|AAZ93220.1| RNase HII [Streptococcus pneumoniae]
 gi|73916740|gb|AAZ93238.1| RNase HII [Streptococcus pneumoniae]
 gi|73916750|gb|AAZ93243.1| RNase HII [Streptococcus pneumoniae]
 gi|73916782|gb|AAZ93259.1| RNase HII [Streptococcus pneumoniae]
 gi|73916786|gb|AAZ93261.1| RNase HII [Streptococcus pneumoniae]
 gi|73916808|gb|AAZ93272.1| RNase HII [Streptococcus pneumoniae]
          Length = 291

 Score = 37.7 bits (86), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|73916792|gb|AAZ93264.1| RNase HII [Streptococcus pneumoniae]
 gi|73916810|gb|AAZ93273.1| RNase HII [Streptococcus pneumoniae]
          Length = 291

 Score = 37.7 bits (86), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|73916718|gb|AAZ93227.1| RNase HII [Streptococcus pneumoniae]
 gi|73916732|gb|AAZ93234.1| RNase HII [Streptococcus pneumoniae]
          Length = 291

 Score = 37.7 bits (86), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|306825816|ref|ZP_07459155.1| ribonuclease HIII [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432177|gb|EFM35154.1| ribonuclease HIII [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 293

 Score = 37.7 bits (86), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
           +P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  FPMIGTDEVGNGSYFGALAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAII 81
              A++
Sbjct: 138 QHQALL 143


>gi|258569747|ref|XP_002543677.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237903947|gb|EEP78348.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 352

 Score = 37.7 bits (86), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 72/176 (40%), Gaps = 35/176 (19%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG------INDSKKISHKKREELY------- 72
           V G+DE GRG + GP+V +A  L  +            NDSK ++   R  L        
Sbjct: 69  VLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFNDSKVLTPGVRSNLMRLLCTPG 128

Query: 73  ---EKITSSAIISIS----SASHQY--IDKHNIHKATLDA----IYHAVENLQVIPRSAL 119
              +K    A+  +S    SA  Q      +N++   +DA    I   VE   V  +   
Sbjct: 129 HSLQKSCGWAVKLLSARDISAGMQRPGAGMYNLNAQAMDATVEIIRGVVEERGVDVKEVY 188

Query: 120 IDGRSIPED--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHK 166
           ID    P+          P     V  K DS+   ++AAS+ AKVTRD  + I ++
Sbjct: 189 IDTIGNPQSYQKKLEMIFPSLKITVAKKADSLFPCVSAASVCAKVTRDSALDICYE 244


>gi|182683372|ref|YP_001835119.1| ribonuclease HIII [Streptococcus pneumoniae CGSP14]
 gi|303255384|ref|ZP_07341450.1| ribonuclease HIII [Streptococcus pneumoniae BS455]
 gi|303259481|ref|ZP_07345458.1| ribonuclease HIII [Streptococcus pneumoniae SP-BS293]
 gi|303262344|ref|ZP_07348287.1| ribonuclease HIII [Streptococcus pneumoniae SP14-BS292]
 gi|303264762|ref|ZP_07350679.1| ribonuclease HIII [Streptococcus pneumoniae BS397]
 gi|303266601|ref|ZP_07352486.1| ribonuclease HIII [Streptococcus pneumoniae BS457]
 gi|303268834|ref|ZP_07354621.1| ribonuclease HIII [Streptococcus pneumoniae BS458]
 gi|238691129|sp|B2ILU9|RNH3_STRPS RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|73916724|gb|AAZ93230.1| RNase HII [Streptococcus pneumoniae]
 gi|73916784|gb|AAZ93260.1| RNase HII [Streptococcus pneumoniae]
 gi|182628706|gb|ACB89654.1| ribonuclease HIII [Streptococcus pneumoniae CGSP14]
 gi|301801316|emb|CBW33999.1| ribonuclease HIII [Streptococcus pneumoniae INV200]
 gi|302597629|gb|EFL64709.1| ribonuclease HIII [Streptococcus pneumoniae BS455]
 gi|302636443|gb|EFL66935.1| ribonuclease HIII [Streptococcus pneumoniae SP14-BS292]
 gi|302639415|gb|EFL69873.1| ribonuclease HIII [Streptococcus pneumoniae SP-BS293]
 gi|302641615|gb|EFL71975.1| ribonuclease HIII [Streptococcus pneumoniae BS458]
 gi|302643845|gb|EFL74107.1| ribonuclease HIII [Streptococcus pneumoniae BS457]
 gi|302645629|gb|EFL75859.1| ribonuclease HIII [Streptococcus pneumoniae BS397]
          Length = 290

 Score = 37.7 bits (86), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|15902409|ref|NP_357959.1| ribonuclease HIII [Streptococcus pneumoniae R6]
 gi|116516121|ref|YP_815878.1| ribonuclease HIII [Streptococcus pneumoniae D39]
 gi|148988156|ref|ZP_01819619.1| ribonuclease HIII [Streptococcus pneumoniae SP6-BS73]
 gi|169834316|ref|YP_001693911.1| ribonuclease HIII [Streptococcus pneumoniae Hungary19A-6]
 gi|221231270|ref|YP_002510422.1| ribonuclease HIII [Streptococcus pneumoniae ATCC 700669]
 gi|30316193|sp|P59660|RNH3_STRR6 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|122279236|sp|Q04M70|RNH3_STRP2 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|238688318|sp|B1I9J8|RNH3_STRPI RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|254808015|sp|B8ZLH1|RNH3_STRPJ RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|2209339|gb|AAC45437.1| ribonuclease HII [Streptococcus pneumoniae]
 gi|15457925|gb|AAK99169.1| Ribonuclease HII [Streptococcus pneumoniae R6]
 gi|73916706|gb|AAZ93221.1| RNase HII [Streptococcus pneumoniae]
 gi|73916762|gb|AAZ93249.1| RNase HII [Streptococcus pneumoniae]
 gi|73916764|gb|AAZ93250.1| RNase HII [Streptococcus pneumoniae]
 gi|73916766|gb|AAZ93251.1| RNase HII [Streptococcus pneumoniae]
 gi|73916768|gb|AAZ93252.1| RNase HII [Streptococcus pneumoniae]
 gi|73916770|gb|AAZ93253.1| RNase HII [Streptococcus pneumoniae]
 gi|73916774|gb|AAZ93255.1| RNase HII [Streptococcus pneumoniae]
 gi|73916776|gb|AAZ93256.1| RNase HII [Streptococcus pneumoniae]
 gi|73916778|gb|AAZ93257.1| RNase HII [Streptococcus pneumoniae]
 gi|73916790|gb|AAZ93263.1| RNase HII [Streptococcus pneumoniae]
 gi|73916794|gb|AAZ93265.1| RNase HII [Streptococcus pneumoniae]
 gi|73916796|gb|AAZ93266.1| RNase HII [Streptococcus pneumoniae]
 gi|73916798|gb|AAZ93267.1| RNase HII [Streptococcus pneumoniae]
 gi|73916802|gb|AAZ93269.1| RNase HII [Streptococcus pneumoniae]
 gi|73916804|gb|AAZ93270.1| RNase HII [Streptococcus pneumoniae]
 gi|73916806|gb|AAZ93271.1| RNase HII [Streptococcus pneumoniae]
 gi|73916814|gb|AAZ93275.1| RNase HII [Streptococcus pneumoniae]
 gi|116076697|gb|ABJ54417.1| ribonuclease HIII [Streptococcus pneumoniae D39]
 gi|147926620|gb|EDK77693.1| ribonuclease HIII [Streptococcus pneumoniae SP6-BS73]
 gi|168996818|gb|ACA37430.1| ribonuclease hiii [Streptococcus pneumoniae Hungary19A-6]
 gi|220673730|emb|CAR68229.1| ribonuclease HIII [Streptococcus pneumoniae ATCC 700669]
          Length = 290

 Score = 37.7 bits (86), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|225856132|ref|YP_002737643.1| ribonuclease HIII [Streptococcus pneumoniae P1031]
 gi|254808018|sp|C1CIQ5|RNH3_STRZP RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|225725696|gb|ACO21548.1| ribonuclease hiii [Streptococcus pneumoniae P1031]
          Length = 290

 Score = 37.7 bits (86), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|330925767|ref|XP_003301184.1| hypothetical protein PTT_12627 [Pyrenophora teres f. teres 0-1]
 gi|311324289|gb|EFQ90711.1| hypothetical protein PTT_12627 [Pyrenophora teres f. teres 0-1]
          Length = 332

 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 34/176 (19%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-------NDSKKISHKKREELYEKITS- 77
           V G+DE GRG + GP+V A   L P  +   +       +DSK ++ + R  L  K+ + 
Sbjct: 51  VLGVDEAGRGPVLGPMVYALFYL-PTELHHSLLADTHHFDDSKVLTPEVRSNLMRKLCTK 109

Query: 78  ------SAIISISSASHQYIDKH-------NIHKATLDAIYHAVENL---QVIPRSALID 121
                 +   +    S Q I  H       N++   +DA    ++ +    V      ID
Sbjct: 110 GSDLYDAGGWATRLLSAQDISAHMLSPSVYNLNAQAMDATIDLIKGVLAQGVNVTEIYID 169

Query: 122 GRSIPE--------DLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
               PE          P     V  K DS+   ++AAS+ AKVTRD  + + ++ Y
Sbjct: 170 TIGKPEIYQRKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRDAALDVCYEPY 225


>gi|299822574|ref|ZP_07054460.1| ribonuclease H [Listeria grayi DSM 20601]
 gi|299816103|gb|EFI83341.1| ribonuclease H [Listeria grayi DSM 20601]
          Length = 253

 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 25/154 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78
           V G DEVG G   GP+ V A  +    +P     G+ DSK +   +   + EKI      
Sbjct: 40  VVGSDEVGTGDYFGPITVCAAYVSSEMMPQLTALGVRDSKDMRDPEILTVAEKIIPFVPH 99

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDG--------- 122
           +++   +  +  + +  +++  + AI H  A+EN+      + P + LID          
Sbjct: 100 SVLICPNGKYNALQQSGMNQGKMKAILHNRAIENVLKKLAPLHPDAILIDQFAEKGVYYR 159

Query: 123 --RSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
              + P  +    +   K +   L++AAASIIA+
Sbjct: 160 YLANEPSIMRENVYFATKAEGHHLAVAAASIIAR 193


>gi|171779238|ref|ZP_02920209.1| hypothetical protein STRINF_01086 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282294|gb|EDT47721.1| hypothetical protein STRINF_01086 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 299

 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREE----LYEK 74
           + P+ G DEVG G+  G + V A  + P++       G++DSK ++  K  +    L EK
Sbjct: 81  VMPLIGSDEVGNGSYFGGLAVVASFVTPDDHALLKKLGVDDSKNLTDSKIRQIAPILEEK 140

Query: 75  ITSSAIISISSASHQYIDKHNIHKA 99
           I   A++      +Q + K  +H A
Sbjct: 141 IKHKALLLSPQKYNQVVGKGKMHNA 165


>gi|307710539|ref|ZP_07646975.1| ribonuclease HIII [Streptococcus mitis SK564]
 gi|307618692|gb|EFN97832.1| ribonuclease HIII [Streptococcus mitis SK564]
          Length = 293

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|168485538|ref|ZP_02710046.1| ribonuclease hiii [Streptococcus pneumoniae CDC1087-00]
 gi|73916736|gb|AAZ93236.1| RNase HII [Streptococcus pneumoniae]
 gi|73916800|gb|AAZ93268.1| RNase HII [Streptococcus pneumoniae]
 gi|73916812|gb|AAZ93274.1| RNase HII [Streptococcus pneumoniae]
 gi|183571185|gb|EDT91713.1| ribonuclease hiii [Streptococcus pneumoniae CDC1087-00]
          Length = 290

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|190344386|gb|EDK36053.2| hypothetical protein PGUG_00151 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 343

 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 68/178 (38%), Gaps = 37/178 (20%)

Query: 26  VAGIDEVGRGALAGPVVVA-AIILDPNNI----PFGINDSKKISHKKREELYEKIT---- 76
           V G+DE GRG + GP+V   +  L+         +G  DSK +   KR EL+  +     
Sbjct: 73  VLGVDEAGRGPVLGPMVYGISYCLESYQEDLKHKYGFADSKVLKEDKRRELFYMVESMDH 132

Query: 77  ------------------SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118
                             SSA++    A+         H  T+  I   +++  V  +  
Sbjct: 133 ELNENVGWATRTMTARDISSAMLQGRGAAGGANLNEQAHNTTIQLIREVLDS-GVNVKKV 191

Query: 119 LIDGRSIPED--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
            +D    P           P     V  K DSI   ++ AS++AKVTRD  +   H +
Sbjct: 192 FVDTVGPPATYQKKLQGIFPTLEITVTKKADSIFPIVSTASVVAKVTRDLNIHYYHDQ 249


>gi|73916722|gb|AAZ93229.1| RNase HII [Streptococcus pneumoniae]
          Length = 290

 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|73916710|gb|AAZ93223.1| RNase HII [Streptococcus pneumoniae]
 gi|73916742|gb|AAZ93239.1| RNase HII [Streptococcus pneumoniae]
 gi|73916744|gb|AAZ93240.1| RNase HII [Streptococcus pneumoniae]
 gi|73916746|gb|AAZ93241.1| RNase HII [Streptococcus pneumoniae]
 gi|73916748|gb|AAZ93242.1| RNase HII [Streptococcus pneumoniae]
          Length = 290

 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|307706054|ref|ZP_07642873.1| ribonuclease HIII [Streptococcus mitis SK321]
 gi|307618454|gb|EFN97602.1| ribonuclease HIII [Streptococcus mitis SK321]
          Length = 293

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|73916726|gb|AAZ93231.1| RNase HII [Streptococcus pneumoniae]
          Length = 294

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|222153672|ref|YP_002562849.1| ribonuclease HIII [Streptococcus uberis 0140J]
 gi|254808016|sp|B9DVL0|RNH3_STRU0 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|222114485|emb|CAR43350.1| ribonuclease HIII [Streptococcus uberis 0140J]
          Length = 301

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 27/157 (17%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKIS-HKKRE---ELYEKI 75
           +P+ G DEVG G+  G + V A  + P +  +    G++DSK ++ HK R+    L EKI
Sbjct: 82  YPLIGSDEVGNGSYFGGLAVVASFVKPEDHDYLKQLGVDDSKSLTDHKIRQIAPLLEEKI 141

Query: 76  TSSAIISISSASHQYIDKHNIHKATL-------DAIYHAVENLQVIPRSALIDGRS---- 124
              +++      +  + K   + A          AI+  ++  +VIP   +ID  +    
Sbjct: 142 PHKSLLLTPQKYNTLVGKGKAYNAVSVKVALHNQAIFLLLQQ-KVIPERIIIDAFTSHSN 200

Query: 125 ------IPEDLPCQAFAVI-KGDSISLSIAAASIIAK 154
                   ++   +A  +I K +S  L++A +SIIA+
Sbjct: 201 YLKHLKTEKNQFTEAITLIEKAESQFLAVAVSSIIAR 237


>gi|257867416|ref|ZP_05647069.1| ribonuclease HIII [Enterococcus casseliflavus EC30]
 gi|257873746|ref|ZP_05653399.1| ribonuclease HIII [Enterococcus casseliflavus EC10]
 gi|257877497|ref|ZP_05657150.1| ribonuclease HIII [Enterococcus casseliflavus EC20]
 gi|257801472|gb|EEV30402.1| ribonuclease HIII [Enterococcus casseliflavus EC30]
 gi|257807910|gb|EEV36732.1| ribonuclease HIII [Enterococcus casseliflavus EC10]
 gi|257811663|gb|EEV40483.1| ribonuclease HIII [Enterococcus casseliflavus EC20]
          Length = 308

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 24/154 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---S 78
           V G DEVG G+  GP+VV A+      +P     G+ DSK ++  +  ++  KI      
Sbjct: 94  VVGSDEVGNGSYFGPLVVCAVYAKKEQLPQLKALGVKDSKMLTDPEIRKMAPKIKELVPY 153

Query: 79  AIISISSASHQYID-KHNIHKATLDAIYHAVE-NLQVI----PRSALIDGRSIPED---- 128
            +++++ + +  I  K+N  +  +     A+   LQ I    P + LID  +  ++    
Sbjct: 154 QLLTVTPSKYNEIQPKYNTVRMKVALHNQAIRLLLQKIAPETPDAILIDQFTSEKNYRTY 213

Query: 129 LPCQAFAV-------IKGDSISLSIAAASIIAKV 155
           L  +  AV        KG+   L++AAASI+ + 
Sbjct: 214 LKSEQVAVTEKLYFATKGEQYHLAVAAASILCRT 247


>gi|307708231|ref|ZP_07644698.1| ribonuclease hiii [Streptococcus mitis NCTC 12261]
 gi|307615677|gb|EFN94883.1| ribonuclease hiii [Streptococcus mitis NCTC 12261]
          Length = 293

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
           +P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++  K  +    L EKI
Sbjct: 78  FPLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDLKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|315612578|ref|ZP_07887491.1| ribonuclease HIII [Streptococcus sanguinis ATCC 49296]
 gi|315315559|gb|EFU63598.1| ribonuclease HIII [Streptococcus sanguinis ATCC 49296]
          Length = 291

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
           +P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  FPMIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAII 81
              A++
Sbjct: 138 QHQALL 143


>gi|313230305|emb|CBY08009.1| unnamed protein product [Oikopleura dioica]
          Length = 195

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 22/128 (17%)

Query: 56  GINDSKKISHKKREELYEKITSSAIISIS---------SASHQYIDKHNI----HKATLD 102
           G NDSK++    RE + + I  S  I  +         S S     K+N+    H   + 
Sbjct: 21  GANDSKQLEEVDRERMLKSIDKSGWIGYTGVVLPPAYISKSMLRRIKYNLNEMSHDTAIS 80

Query: 103 AIYHAVENLQVIPRSALIDGRSIPE---DLPCQAFAVI------KGDSISLSIAAASIIA 153
            I  A++   +  +S  +D    PE   D   + F  +      K D+    + AASIIA
Sbjct: 81  MIRRAIDYHGINVKSVFVDTVGKPEKYQDKLLRYFPQLSIKVESKADATYPIVGAASIIA 140

Query: 154 KVTRDRLM 161
           KVTRD+L+
Sbjct: 141 KVTRDKLV 148


>gi|314938144|ref|ZP_07845449.1| ribonuclease HIII [Enterococcus faecium TX0133a04]
 gi|314943815|ref|ZP_07850550.1| ribonuclease HIII [Enterococcus faecium TX0133C]
 gi|314949774|ref|ZP_07853084.1| ribonuclease HIII [Enterococcus faecium TX0082]
 gi|314951182|ref|ZP_07854240.1| ribonuclease HIII [Enterococcus faecium TX0133A]
 gi|314994413|ref|ZP_07859697.1| ribonuclease HIII [Enterococcus faecium TX0133B]
 gi|314995609|ref|ZP_07860703.1| ribonuclease HIII [Enterococcus faecium TX0133a01]
 gi|313590197|gb|EFR69042.1| ribonuclease HIII [Enterococcus faecium TX0133a01]
 gi|313591185|gb|EFR70030.1| ribonuclease HIII [Enterococcus faecium TX0133B]
 gi|313596661|gb|EFR75506.1| ribonuclease HIII [Enterococcus faecium TX0133A]
 gi|313597539|gb|EFR76384.1| ribonuclease HIII [Enterococcus faecium TX0133C]
 gi|313642491|gb|EFS07071.1| ribonuclease HIII [Enterococcus faecium TX0133a04]
 gi|313643847|gb|EFS08427.1| ribonuclease HIII [Enterococcus faecium TX0082]
          Length = 313

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 33/195 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHK---KREELYEKITSS 78
           V G DEVG G+  GP+ V A  +  + +      G+ DSK++      +  ++ +K    
Sbjct: 99  VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKKTIPY 158

Query: 79  AIISISSASHQYID-KHN-------IHKATLDAIYHAVENLQVIPRSALID--------- 121
            ++ +S   +  I  K+N       +H   +  +   +E  +  P + LID         
Sbjct: 159 KLLVLSPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIEPEK--PEAILIDQFTPEANFK 216

Query: 122 --GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
              R     L  + + V KG+   L++AAASII   +R   +   HK   + G     G 
Sbjct: 217 KYARLEKNQLQEKLYFVTKGEQYHLAVAAASII---SRASFLEELHKASAEAGITLPSGA 273

Query: 180 PTAKHQQVIK--EKG 192
            T   Q   K  EKG
Sbjct: 274 GTKSDQVAAKLLEKG 288


>gi|69245129|ref|ZP_00603253.1| Ribonuclease HIII [Enterococcus faecium DO]
 gi|257879657|ref|ZP_05659310.1| ribonuclease HIII [Enterococcus faecium 1,230,933]
 gi|257890323|ref|ZP_05669976.1| ribonuclease HIII [Enterococcus faecium 1,231,410]
 gi|258614464|ref|ZP_05712234.1| ribonuclease HIII [Enterococcus faecium DO]
 gi|260559681|ref|ZP_05831861.1| ribonuclease HIII [Enterococcus faecium C68]
 gi|293560083|ref|ZP_06676587.1| ribonuclease hiii [Enterococcus faecium E1162]
 gi|294614400|ref|ZP_06694316.1| ribonuclease hiii [Enterococcus faecium E1636]
 gi|294617524|ref|ZP_06697154.1| ribonuclease hiii [Enterococcus faecium E1679]
 gi|68195972|gb|EAN10405.1| Ribonuclease HIII [Enterococcus faecium DO]
 gi|257813885|gb|EEV42643.1| ribonuclease HIII [Enterococcus faecium 1,230,933]
 gi|257826683|gb|EEV53309.1| ribonuclease HIII [Enterococcus faecium 1,231,410]
 gi|260074349|gb|EEW62671.1| ribonuclease HIII [Enterococcus faecium C68]
 gi|291592708|gb|EFF24301.1| ribonuclease hiii [Enterococcus faecium E1636]
 gi|291596130|gb|EFF27393.1| ribonuclease hiii [Enterococcus faecium E1679]
 gi|291605950|gb|EFF35380.1| ribonuclease hiii [Enterococcus faecium E1162]
          Length = 305

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 33/195 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHK---KREELYEKITSS 78
           V G DEVG G+  GP+ V A  +  + +      G+ DSK++      +  ++ +K    
Sbjct: 91  VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKKTIPY 150

Query: 79  AIISISSASHQYID-KHN-------IHKATLDAIYHAVENLQVIPRSALID--------- 121
            ++ +S   +  I  K+N       +H   +  +   +E  +  P + LID         
Sbjct: 151 KLLVLSPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIEPEK--PEAILIDQFTPEANFK 208

Query: 122 --GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
              R     L  + + V KG+   L++AAASII   +R   +   HK   + G     G 
Sbjct: 209 KYARLEKNQLQEKLYFVTKGEQYHLAVAAASII---SRASFLEELHKASAEAGITLPSGA 265

Query: 180 PTAKHQQVIK--EKG 192
            T   Q   K  EKG
Sbjct: 266 GTKSDQVAAKLLEKG 280


>gi|289168568|ref|YP_003446837.1| predicted ribonuclease HIII [Streptococcus mitis B6]
 gi|288908135|emb|CBJ22976.1| predicted ribonuclease HIII [Streptococcus mitis B6]
          Length = 293

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|325568912|ref|ZP_08145205.1| ribonuclease HIII [Enterococcus casseliflavus ATCC 12755]
 gi|325157950|gb|EGC70106.1| ribonuclease HIII [Enterococcus casseliflavus ATCC 12755]
          Length = 308

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 24/154 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---S 78
           V G DEVG G+  GP+VV A+      +P     G+ DSK ++  +  ++  KI      
Sbjct: 94  VVGSDEVGNGSYFGPLVVCAVYAKKEQLPQLKALGVKDSKMLTDPEIRKMAPKIKELVPY 153

Query: 79  AIISISSASHQYID-KHNIHKATLDAIYHAVE-NLQVI----PRSALIDGRSIPED---- 128
            +++++ + +  I  K+N  +  +     A+   LQ I    P + LID  +  ++    
Sbjct: 154 QLLTVTPSKYNEIQPKYNTVRMKVALHNQAIRLLLQKIAPETPDAILIDQFTSEKNYRTY 213

Query: 129 LPCQAFAV-------IKGDSISLSIAAASIIAKV 155
           L  +  AV        KG+   L++AAASI+ + 
Sbjct: 214 LKSEQAAVTEKLYFATKGEQYHLAVAAASILCRT 247


>gi|182413914|ref|YP_001818980.1| ribonuclease HIII [Opitutus terrae PB90-1]
 gi|177841128|gb|ACB75380.1| ribonuclease HIII [Opitutus terrae PB90-1]
          Length = 334

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREEL 71
           P AG+DE G+G   GPV+ A +I +   I      G+ DSKKI+  +  EL
Sbjct: 105 PHAGLDESGKGDFFGPVIAATVIAEKPAIEAWRKAGVQDSKKIAETRIIEL 155


>gi|281358639|ref|ZP_06245117.1| ribonuclease HIII [Victivallis vadensis ATCC BAA-548]
 gi|281314869|gb|EFA98904.1| ribonuclease HIII [Victivallis vadensis ATCC BAA-548]
          Length = 315

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 88/201 (43%), Gaps = 31/201 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKI-SHKKREELYEKI---- 75
           P  GIDE G+G   GP+ +A +  D    P     G  DSK I S KK  EL + I    
Sbjct: 95  PHGGIDESGKGDFFGPLCIAGVYADAETGPELRKLGCCDSKLIKSPKKILELAKGIREIA 154

Query: 76  -TSSAIISISSASHQYI-DK-HNIHKATLDAIYHAVEN-LQVIPRSALIDGRSIPEDLPC 131
               A++++   ++  + DK  N+++         +EN L+ +P    +      ++   
Sbjct: 155 RDQYAVVNLPPETYNRLYDKIGNLNRLLAWGHARVIENLLEKVPECPRMLSDKFADESLI 214

Query: 132 QAFAVIKGDSISL----------SIAAASIIAKVTRDRLMRIAHKKYPDYG--FDSHVGY 179
           +   + +G  I +          ++AAASI+A   R++ +R   K   ++G  F    G 
Sbjct: 215 KRALMTRGKQIRMEQRTKAESDVAVAAASILA---REQFLRGMEKLSAEFGETFPKGAG- 270

Query: 180 PTAKHQ--QVIKEKGPSCIHR 198
           P  +    +++++ GP    R
Sbjct: 271 PLVRETGARILEKHGPGAFAR 291


>gi|56421232|ref|YP_148550.1| ribonuclease HIII [Geobacillus kaustophilus HTA426]
 gi|81346706|sp|Q5KWF4|RNH3_GEOKA RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|56381074|dbj|BAD76982.1| ribonuclease HIII (RNase HIII) [Geobacillus kaustophilus HTA426]
          Length = 311

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 7/86 (8%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS---AI 80
           G DEVG G   GP+VVAA  +D ++I      G+ DSK+++ +   ++   I  +   A+
Sbjct: 97  GSDEVGTGDYFGPIVVAAAYVDRSHIAKIAALGVKDSKQLTDEAIHKIAPAIMETAPYAV 156

Query: 81  ISISSASHQYIDKHNIHKATLDAIYH 106
             + +A +    +  + +  + A+ H
Sbjct: 157 TVLDNAEYNRWQRSGMPQTKMKALLH 182


>gi|297529143|ref|YP_003670418.1| ribonuclease HIII [Geobacillus sp. C56-T3]
 gi|297252395|gb|ADI25841.1| ribonuclease HIII [Geobacillus sp. C56-T3]
          Length = 311

 Score = 37.0 bits (84), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 7/86 (8%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS---AI 80
           G DEVG G   GP+VVAA  +D ++I      G+ DSK+++ +  + +   I  +   A+
Sbjct: 97  GSDEVGTGDYFGPIVVAAAYVDRSHIAKIAALGVKDSKQLNDEAIKRIAPAIMETAPYAV 156

Query: 81  ISISSASHQYIDKHNIHKATLDAIYH 106
             + +A +    +  + +  + A+ H
Sbjct: 157 TVLDNAEYNRWQRSGMPQTKMKALLH 182


>gi|253751116|ref|YP_003024257.1| ribonuclease HIII [Streptococcus suis SC84]
 gi|253753017|ref|YP_003026157.1| ribonuclease HIII [Streptococcus suis P1/7]
 gi|253754840|ref|YP_003027980.1| ribonuclease HIII [Streptococcus suis BM407]
 gi|251815405|emb|CAZ50980.1| ribonuclease HIII [Streptococcus suis SC84]
 gi|251817304|emb|CAZ55036.1| ribonuclease HIII [Streptococcus suis BM407]
 gi|251819262|emb|CAR44544.1| ribonuclease HIII [Streptococcus suis P1/7]
 gi|292557671|gb|ADE30672.1| Ribonuclease HIII [Streptococcus suis GZ1]
 gi|319757381|gb|ADV69323.1| ribonuclease HIII [Streptococcus suis JS14]
          Length = 296

 Score = 37.0 bits (84), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 5/63 (7%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKIS 64
            P    +A +  +N+ P+ G DEVG G+  G + V A  + P +  F    G++DSKK++
Sbjct: 68  EPESSGQATIPGQNL-PMIGTDEVGNGSYFGGLAVVAGFVRPEDHSFLKSLGVDDSKKMT 126

Query: 65  HKK 67
            +K
Sbjct: 127 DQK 129


>gi|151944462|gb|EDN62740.1| Rnh2A [Saccharomyces cerevisiae YJM789]
 gi|259149289|emb|CAY82531.1| Rnh201p [Saccharomyces cerevisiae EC1118]
          Length = 307

 Score = 37.0 bits (84), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 6/56 (10%)

Query: 26 VAGIDEVGRGALAGPVVVAAI-----ILDPNNIP-FGINDSKKISHKKREELYEKI 75
          + GIDE GRG + GP+V A         D   IP +  +DSKK++   R  L+ KI
Sbjct: 35 IMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIRRMLFSKI 90


>gi|146317882|ref|YP_001197594.1| ribonuclease HIII [Streptococcus suis 05ZYH33]
 gi|146320071|ref|YP_001199782.1| ribonuclease HIII [Streptococcus suis 98HAH33]
 gi|145688688|gb|ABP89194.1| Ribonuclease HIII [Streptococcus suis 05ZYH33]
 gi|145690877|gb|ABP91382.1| Ribonuclease HIII [Streptococcus suis 98HAH33]
          Length = 302

 Score = 37.0 bits (84), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 5/63 (7%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKIS 64
            P    +A +  +N+ P+ G DEVG G+  G + V A  + P +  F    G++DSKK++
Sbjct: 74  EPESSGQATIPGQNL-PMIGTDEVGNGSYFGGLAVVAGFVRPEDHSFLKSLGVDDSKKMT 132

Query: 65  HKK 67
            +K
Sbjct: 133 DQK 135


>gi|323346904|gb|EGA81183.1| Rnh201p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 307

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 6/56 (10%)

Query: 26 VAGIDEVGRGALAGPVVVAAI-----ILDPNNIP-FGINDSKKISHKKREELYEKI 75
          + GIDE GRG + GP+V A         D   IP +  +DSKK++   R  L+ KI
Sbjct: 35 IMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIRRMLFSKI 90


>gi|323335818|gb|EGA77097.1| Rnh201p [Saccharomyces cerevisiae Vin13]
          Length = 307

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 6/56 (10%)

Query: 26 VAGIDEVGRGALAGPVVVAAI-----ILDPNNIP-FGINDSKKISHKKREELYEKI 75
          + GIDE GRG + GP+V A         D   IP +  +DSKK++   R  L+ KI
Sbjct: 35 IMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIRRMLFSKI 90


>gi|6324257|ref|NP_014327.1| Rnh201p [Saccharomyces cerevisiae S288c]
 gi|1730743|sp|P53942|RNH2A_YEAST RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit
          A; AltName: Full=RNase H(201); AltName: Full=RNase
          H(35); AltName: Full=Ribonuclease HI large subunit;
          Short=RNase HI large subunit; AltName:
          Full=Ribonuclease HI subunit A
 gi|791114|emb|CAA60188.1| unknown [Saccharomyces cerevisiae]
 gi|1301957|emb|CAA95946.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|190409061|gb|EDV12326.1| ribonuclease HI 35 large subunit [Saccharomyces cerevisiae
          RM11-1a]
 gi|207341690|gb|EDZ69676.1| YNL072Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|285814579|tpg|DAA10473.1| TPA: Rnh201p [Saccharomyces cerevisiae S288c]
 gi|323331967|gb|EGA73379.1| Rnh201p [Saccharomyces cerevisiae AWRI796]
 gi|323352575|gb|EGA85074.1| Rnh201p [Saccharomyces cerevisiae VL3]
          Length = 307

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 6/56 (10%)

Query: 26 VAGIDEVGRGALAGPVVVAAI-----ILDPNNIP-FGINDSKKISHKKREELYEKI 75
          + GIDE GRG + GP+V A         D   IP +  +DSKK++   R  L+ KI
Sbjct: 35 IMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIRRMLFSKI 90


>gi|309799726|ref|ZP_07693942.1| ribonuclease hiii [Streptococcus infantis SK1302]
 gi|308116642|gb|EFO54102.1| ribonuclease hiii [Streptococcus infantis SK1302]
          Length = 293

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREEL 71
           +P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +L
Sbjct: 78  FPLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQL 129


>gi|327439303|dbj|BAK15668.1| ribonuclease HIII [Solibacillus silvestris StLB046]
          Length = 309

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 74/173 (42%), Gaps = 31/173 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREEL---YEKITSS 78
           V G DE G G   GPV VAA+ +  + I      G+ DSK+++     ++     K+ + 
Sbjct: 92  VLGSDETGTGDYFGPVTVAAVYVPADKISLVQELGVKDSKQLTDDYMRQIAPDLMKVCAY 151

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI-------PRSALIDG--------- 122
           +I+++ +  +  I      +  + A+ H      V+       P+  LID          
Sbjct: 152 SILTLRNDKYNEIQARGYSQGKIKALLHNQALKHVLTKIAPETPQYILIDQFAERGIYYN 211

Query: 123 --RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYP 169
             ++  E +        K +++ +++A ASI+A+       DRL ++    YP
Sbjct: 212 HIKNEKEIVRQNVLFSTKAENLHVAVATASILARYAFLKEMDRLAKVTG--YP 262


>gi|156063040|ref|XP_001597442.1| hypothetical protein SS1G_01636 [Sclerotinia sclerotiorum 1980]
 gi|154696972|gb|EDN96710.1| hypothetical protein SS1G_01636 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 361

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 74/183 (40%), Gaps = 32/183 (17%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFG------INDSKKISHKKREELYEKITSS--- 78
           GIDE GRG + GP+V     L               +DSK ++   R EL +K+ +    
Sbjct: 70  GIDEAGRGPVLGPMVYGLFYLPLPLSDPLLRNTHHFDDSKVLTPTVRSELMKKLCTPDSD 129

Query: 79  -------AIISISS----ASHQYIDKHNIHKATLD---AIYHAVENLQVIPRSALIDG-- 122
                  A+  +S+    A+      +N++   +D   A+   V +  V  +   ID   
Sbjct: 130 LYTQCGWAVDVLSARDIGANMMKPATYNLNAQAMDSTIALIQGVMDKGVNVKEIYIDALG 189

Query: 123 ------RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
                 + +    P     V  K DS+   ++AAS+ AKVTRD  +   ++ Y     D 
Sbjct: 190 NTVTYQKKLERIFPTAQITVAKKADSLYPCVSAASVCAKVTRDAALETLYESYVSKDGDQ 249

Query: 176 HVG 178
            +G
Sbjct: 250 EMG 252


>gi|116200221|ref|XP_001225922.1| hypothetical protein CHGG_08266 [Chaetomium globosum CBS 148.51]
 gi|88179545|gb|EAQ87013.1| hypothetical protein CHGG_08266 [Chaetomium globosum CBS 148.51]
          Length = 344

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 70/173 (40%), Gaps = 34/173 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILD-PNNIPF-----GINDSKKISHKKREELYEKITS---- 77
           G+DE GRG + GP+V     L  P + P        +DSK ++   R  L E + +    
Sbjct: 63  GVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRTTHHFDDSKVLTPAVRASLMETLCTPTSD 122

Query: 78  ---SAIISISSASHQYIDK---------HNIHKATLDAIYHAVENL---QVIPRSALIDG 122
              S   ++ + S + I           +N++   +DA    ++ +    V  R   +D 
Sbjct: 123 LYESCGWAVDALSARDIGAGMLRPGLGAYNLNAQAMDATVELIKGVYARGVNVREIYVDT 182

Query: 123 RSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK 166
              P           P     V K  DS+  S++AAS+ AKVTRD  +    K
Sbjct: 183 IGQPAAYQAKLARVFPAAKVTVAKKADSLYPSVSAASVCAKVTRDVALETLWK 235


>gi|225860427|ref|YP_002741936.1| ribonuclease HIII [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229684|ref|ZP_06963365.1| ribonuclease HIII [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254632|ref|ZP_06978218.1| ribonuclease HIII [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298502197|ref|YP_003724137.1| ribonuclease H [Streptococcus pneumoniae TCH8431/19A]
 gi|254808019|sp|C1CPR4|RNH3_STRZT RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|225727225|gb|ACO23076.1| ribonuclease hiii [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237792|gb|ADI68923.1| ribonuclease H [Streptococcus pneumoniae TCH8431/19A]
 gi|327390813|gb|EGE89153.1| ribonuclease HIII [Streptococcus pneumoniae GA04375]
          Length = 293

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAII 81
              A++
Sbjct: 138 QHQALL 143


>gi|73916754|gb|AAZ93245.1| RNase HII [Streptococcus pneumoniae]
 gi|73916758|gb|AAZ93247.1| RNase HII [Streptococcus pneumoniae]
 gi|73916760|gb|AAZ93248.1| RNase HII [Streptococcus pneumoniae]
          Length = 291

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAII 81
              A++
Sbjct: 138 QHQALL 143


>gi|253990541|ref|YP_003041897.1| syringopeptin synthetase C [Photorhabdus asymbiotica subsp.
            asymbiotica ATCC 43949]
 gi|211638888|emb|CAR67503.1| similar to Syringopeptin synthetase C [Photorhabdus asymbiotica
            subsp. asymbiotica ATCC 43949]
 gi|253781991|emb|CAQ85155.1| similar to Syringopeptin synthetase C [Photorhabdus asymbiotica]
          Length = 5167

 Score = 36.6 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 30   DEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQ 89
            D VGR AL  P++   ++LDPN +P  ++ + ++S      L   I +S   S  +    
Sbjct: 3336 DHVGRTALDDPMLSGLMVLDPNLLPDQLDSNPQVSALTARHLAYVIYTSG--STGTPKGV 3393

Query: 90   YIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAA 149
             ++    H+  ++ I   +    + P S ++   S   D       ++ G   SL+I A 
Sbjct: 3394 MVE----HRGLVNLIQDKIAQFDIHPNSRVLQFASFGFDASVWEIMMVLGGGASLAIPAD 3449

Query: 150  SI 151
            ++
Sbjct: 3450 AV 3451


>gi|116513211|ref|YP_812118.1| ribonuclease HIII [Lactococcus lactis subsp. cremoris SK11]
 gi|123125205|sp|Q02VL7|RNH3_LACLS RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|116108865|gb|ABJ74005.1| Ribonuclease HIII [Lactococcus lactis subsp. cremoris SK11]
          Length = 292

 Score = 36.6 bits (83), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 16  AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKK 67
           A V  K    + G DEVG G+  G ++V A  +  N++ F    G+ DSKK++ +K
Sbjct: 68  AQVVPKKQTNLIGTDEVGNGSYFGGLMVTASFVSDNHLKFLKEMGVADSKKLTDEK 123


>gi|15828771|ref|NP_326131.1| ribonuclease HII (RNase HII) [Mycoplasma pulmonis UAB CTIP]
 gi|14089714|emb|CAC13473.1| RIBONUCLEASE HII (RNASE HII) [Mycoplasma pulmonis]
          Length = 243

 Score = 36.6 bits (83), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREEL 71
          V GIDE G G    P+V A  ++   N    I  G+ DSKK+S  K ++L
Sbjct: 21 VLGIDETGVGDYFTPLVAAVAVVSEENVQKLIDLGVKDSKKLSDSKIQQL 70


>gi|330832064|ref|YP_004400889.1| ribonuclease HIII [Streptococcus suis ST3]
 gi|329306287|gb|AEB80703.1| ribonuclease HIII [Streptococcus suis ST3]
          Length = 296

 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 4/47 (8%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKK 67
           P+ G DEVG G+  G + V A  + P +  F    G++DSKK++ +K
Sbjct: 83  PMIGTDEVGNGSYFGGLAVVASFVRPEDHAFLKSLGVDDSKKMTDQK 129


>gi|302413253|ref|XP_003004459.1| ribonuclease H2 subunit A [Verticillium albo-atrum VaMs.102]
 gi|261357035|gb|EEY19463.1| ribonuclease H2 subunit A [Verticillium albo-atrum VaMs.102]
          Length = 264

 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 40/177 (22%)

Query: 28  GIDEVGRGALAGPVVVAAIILD-PNNIPF-----GINDSKKISHKKREELYEKITSS--- 78
           GIDE GRG + GP+  AA  L  P + P        +DSK ++   R  L   + S    
Sbjct: 72  GIDEAGRGPVLGPMTYAAFYLPMPLSDPLLRETHHFDDSKVLTPAVRSALMRALCSPSTD 131

Query: 79  -------AIISIS-----SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA-----LID 121
                  A+ S+S     S      + +N++    DA    ++   VI R        +D
Sbjct: 132 LAASCGYAVRSLSARDIASGMLSTANPYNLNAQAFDATVEIIKG--VIARGVRVEEIYVD 189

Query: 122 GRSIPED--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRI---AHK 166
               P           P     V  K DS+   ++AAS+ AKVTRD  + +   AHK
Sbjct: 190 TVGQPAAYQAKLQRVFPSVKITVAKKADSLYPCVSAASVCAKVTRDAALEVMYEAHK 246


>gi|223932747|ref|ZP_03624745.1| ribonuclease HIII [Streptococcus suis 89/1591]
 gi|223898580|gb|EEF64943.1| ribonuclease HIII [Streptococcus suis 89/1591]
          Length = 296

 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 4/47 (8%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKK 67
           P+ G DEVG G+  G + V A  + P +  F    G++DSKK++ +K
Sbjct: 83  PMIGTDEVGNGSYFGGLAVVASFVRPEDHAFLKSLGVDDSKKMTDQK 129


>gi|307704254|ref|ZP_07641173.1| ribonuclease HIII [Streptococcus mitis SK597]
 gi|307622165|gb|EFO01183.1| ribonuclease HIII [Streptococcus mitis SK597]
          Length = 293

 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
               ++   S  ++ I D++N
Sbjct: 138 QHQTLLLSPSKYNEVIGDRYN 158


>gi|302023278|ref|ZP_07248489.1| ribonuclease HIII [Streptococcus suis 05HAS68]
          Length = 273

 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 4/47 (8%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKK 67
           P+ G DEVG G+  G + V A  + P +  F    G++DSKK++ +K
Sbjct: 83  PMIGTDEVGNGSYFGGLAVVASFVRPEDHAFLKSLGVDDSKKMTDQK 129


>gi|196232748|ref|ZP_03131599.1| ribonuclease HIII [Chthoniobacter flavus Ellin428]
 gi|196223208|gb|EDY17727.1| ribonuclease HIII [Chthoniobacter flavus Ellin428]
          Length = 319

 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 67/160 (41%), Gaps = 37/160 (23%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKR-EELYE--KITS 77
           P  G+DE G+G   GP+V+A    D       +  GI DSKKI   KR  +L    K T 
Sbjct: 98  PHFGVDESGKGDFFGPLVIAGCYTDRGITRTLMEAGIQDSKKIGSDKRIRDLAAIIKRTQ 157

Query: 78  SAIISISSASHQ-----YIDKHNIHKATLDAIYHAVENL------------------QVI 114
            A+ S+ +   +     Y    N+++         +ENL                   +I
Sbjct: 158 GAVHSVVAIGPERYNQLYAKFGNLNRLLAWGHARVIENLLEIRPDCPRALSDQFANPALI 217

Query: 115 PRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
            R+ L  GR+I  D   +A          +++AAASI+A+
Sbjct: 218 KRALLEKGRAIQLDQRTKA-------ESDVAVAAASILAR 250


>gi|71894629|ref|YP_278737.1| ribonuclease HII [Mycoplasma synoviae 53]
          Length = 237

 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 11/105 (10%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---- 77
           V GIDEVG G    P++  A+ +  + +      G+ DSK +S +K ++++  I S    
Sbjct: 18  VFGIDEVGVGEFFTPLIATAVYVPKDKLEILKNLGVKDSKLLSDEKIKKVFNDIKSHIQY 77

Query: 78  -SAIISISSASHQYIDKHNIHKATLDAIYHAVENL-QVIPRSALI 120
            SA+IS  S +  +  K N ++    A   A+ NL + + +S L+
Sbjct: 78  ASALISQKSYNILFT-KFNANEIKFLAHAEAINNLRKKVKKSELL 121


>gi|315222238|ref|ZP_07864144.1| ribonuclease HIII [Streptococcus anginosus F0211]
 gi|315188571|gb|EFU22280.1| ribonuclease HIII [Streptococcus anginosus F0211]
          Length = 296

 Score = 36.2 bits (82), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 8/75 (10%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE 70
           E     +   P+ G DEVG G+  G + V A  + P    F    G+ DSK ++ +K  +
Sbjct: 72  EKTTSHRQNCPLIGTDEVGNGSYFGGLAVVASFVTPEQHDFLRKLGVGDSKTLTDQKIRQ 131

Query: 71  ----LYEKITSSAII 81
               L EKI   A++
Sbjct: 132 IVPLLKEKIQHQALL 146


>gi|144575201|gb|AAZ44026.2| ribonuclease HII [Mycoplasma synoviae 53]
          Length = 242

 Score = 36.2 bits (82), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 11/105 (10%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---- 77
           V GIDEVG G    P++  A+ +  + +      G+ DSK +S +K ++++  I S    
Sbjct: 23  VFGIDEVGVGEFFTPLIATAVYVPKDKLEILKNLGVKDSKLLSDEKIKKVFNDIKSHIQY 82

Query: 78  -SAIISISSASHQYIDKHNIHKATLDAIYHAVENL-QVIPRSALI 120
            SA+IS  S +  +  K N ++    A   A+ NL + + +S L+
Sbjct: 83  ASALISQKSYNILFT-KFNANEIKFLAHAEAINNLRKKVKKSELL 126


>gi|73916816|gb|AAZ93276.1| RNase HII [Streptococcus pneumoniae]
          Length = 291

 Score = 36.2 bits (82), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 15/123 (12%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKK 67
           ++L    R +N+ P+ G DEVG G+  G + V A  +  +   F    G+ DSK ++ +K
Sbjct: 67  YQLVEENRGQNL-PLIGTDEVGNGSYFGGLAVVAAFVTSDQHDFLRKLGVGDSKTLTDQK 125

Query: 68  REE----LYEKITSSAIISISSASHQYI-DKHNI--HKATL--DAIYHAVENLQVIPRSA 118
             +    L EKI   A++   S  ++ I D++N    K TL   AIY  ++   V P   
Sbjct: 126 IRQIAPILKEKIQHQALLLSPSKYNEVIGDRYNAVSVKVTLHNQAIYLLLQK-GVQPEKI 184

Query: 119 LID 121
           +ID
Sbjct: 185 VID 187


>gi|189195170|ref|XP_001933923.1| ribonuclease HI large subunit [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187979802|gb|EDU46428.1| ribonuclease HI large subunit [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 342

 Score = 36.2 bits (82), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 34/176 (19%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-------NDSKKISHKKREELYEKITS- 77
           V G+DE GRG + GP+V A   L P  +   +       +DSK ++ + R  L  K+ + 
Sbjct: 60  VLGVDEAGRGPVLGPMVYALFYL-PIELHHSLLADTHHFDDSKVLTPEVRSNLMRKLCTK 118

Query: 78  ------SAIISISSASHQYIDKH-------NIHKATLDAIYHAVENL---QVIPRSALID 121
                 +   +    S Q I  H       N++   +DA    ++ +    V      ID
Sbjct: 119 GSDLYDAGGWATRLLSAQDISAHMLSPSVYNLNAQAMDATIDLIKGVLAQGVNVTEIYID 178

Query: 122 GRSIPE--------DLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
               PE          P     V  K DS+   ++AAS+ AKVTRD  + + ++ Y
Sbjct: 179 TIGKPEIYQRKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRDAALDVCYEPY 234


>gi|225850093|ref|YP_002730327.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Persephonella
           marina EX-H1]
 gi|225646617|gb|ACO04803.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Persephonella
           marina EX-H1]
          Length = 306

 Score = 36.2 bits (82), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 30  DEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQ 89
           D VGRG L  P+VV    L   ++ +G+ D+ +   K RE+LY + T      + +   +
Sbjct: 86  DIVGRGKL--PIVVGGTWLYIQSLLYGLTDAPEGDWKIREQLYRRDTEDLYNELQNVDRE 143

Query: 90  YIDKHNIHKATLDAIYHAVE 109
           Y +K  IH      I  A+E
Sbjct: 144 YAEK--IHPNDKRRIVRALE 161


>gi|9664592|gb|AAF97195.1|AF268611_19 ribonuclease HII [uncultured marine group II euryarchaeote 37F11]
          Length = 250

 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 80/208 (38%), Gaps = 53/208 (25%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHKKREELYEKITSSAIIS 82
           G+DE GRG + GP+VV  + + P    +      I DSK +SH KR+  Y+ +       
Sbjct: 9   GVDEAGRGPVLGPLVVGLLSI-PKEDEYMLEEQCIEDSKHLSHAKRKLHYDWLNQQV--- 64

Query: 83  ISSASHQYIDKHNIHKATLD-AIYHAVENLQVIPRSA----------------LIDGRSI 125
             +    Y+D        +D A+Y    N+  +   A                L+D   +
Sbjct: 65  --TERGWYVDTIICKPNRIDNAVYAKGLNILEVDLFASILNRHHRLFTQELDILLDACDV 122

Query: 126 PE------------DLPCQAFAVI---KGDSISLSIAAASIIAKVTRD-RLMRIAHKKYP 169
            E            D P     +I   K D+    +  ASI+AKV RD  + RIA     
Sbjct: 123 NEERFSNRISERLTDWPWLKTTMIAEHKADTNHRIVGGASILAKVVRDMEIERIA----V 178

Query: 170 DYGFDSHVGYPTAKHQ-----QVIKEKG 192
           D G     GYP   +       +IKE G
Sbjct: 179 DVGAPVGSGYPADPNTVKALPYLIKEDG 206


>gi|293553123|ref|ZP_06673761.1| ribonuclease hiii [Enterococcus faecium E1039]
 gi|291602714|gb|EFF32928.1| ribonuclease hiii [Enterococcus faecium E1039]
          Length = 305

 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 28/157 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHK---KREELYEKITSS 78
           V G DEVG G+  GP+ V A  +  + +      G+ DSK+++     +  ++ +K    
Sbjct: 91  VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELTDSQIIQLADILKKTIPY 150

Query: 79  AIISISSASHQYID-KHN-------IHKATLDAIYHAVENLQVIPRSALID--------- 121
            ++ +S   +  I  K+N       +H  T+  +   +   +  P + LID         
Sbjct: 151 KLLVLSPEKYNEIQPKYNAVRMKVALHNQTIHLLLKKIAPEK--PEAILIDQFTPEANFK 208

Query: 122 --GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVT 156
              R     L  + + V KG+   L++AAASII++ +
Sbjct: 209 KYARLEKNQLQEKLYFVTKGEQYHLAVAAASIISRAS 245


>gi|301793646|emb|CBW36031.1| ribonuclease HIII [Streptococcus pneumoniae INV104]
          Length = 293

 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 10/93 (10%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKK 67
           ++L    R +N+ P+ G DEVG G+  G + V A  +  +   F    G+ DSK ++ +K
Sbjct: 67  YQLVEENRGQNL-PLIGTDEVGNGSYFGGLAVVAAFVTSDQHDFLRKLGVGDSKTLTDQK 125

Query: 68  REE----LYEKITSSAIISISSASHQYI-DKHN 95
             +    L EKI   A++   S  ++ I D++N
Sbjct: 126 IRQIAPILKEKIQHQALLLSPSKYNEVIGDRYN 158


>gi|138896261|ref|YP_001126714.1| ribonuclease HIII [Geobacillus thermodenitrificans NG80-2]
 gi|196250218|ref|ZP_03148912.1| ribonuclease HIII [Geobacillus sp. G11MC16]
 gi|134267774|gb|ABO67969.1| Ribonuclease HIII [Geobacillus thermodenitrificans NG80-2]
 gi|196210402|gb|EDY05167.1| ribonuclease HIII [Geobacillus sp. G11MC16]
          Length = 313

 Score = 35.8 bits (81), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 7/86 (8%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS---AI 80
           G DEVG G   GP+VVAA  +D  ++      G+ DSK+++ +    +   I  +   A+
Sbjct: 99  GSDEVGTGDYFGPIVVAAAYVDRGHLDRIAALGVKDSKQLNDETITRIAPTIMETVPYAV 158

Query: 81  ISISSASHQYIDKHNIHKATLDAIYH 106
             +++A +    +  + +  + A+ H
Sbjct: 159 TVLTNAEYNRWQQSGMPQTKMKALLH 184


>gi|257882653|ref|ZP_05662306.1| ribonuclease HIII [Enterococcus faecium 1,231,502]
 gi|257883962|ref|ZP_05663615.1| ribonuclease HIII [Enterococcus faecium 1,231,501]
 gi|293568791|ref|ZP_06680105.1| ribonuclease hiii [Enterococcus faecium E1071]
 gi|294622759|ref|ZP_06701714.1| ribonuclease hiii [Enterococcus faecium U0317]
 gi|257818311|gb|EEV45639.1| ribonuclease HIII [Enterococcus faecium 1,231,502]
 gi|257819800|gb|EEV46948.1| ribonuclease HIII [Enterococcus faecium 1,231,501]
 gi|291588508|gb|EFF20342.1| ribonuclease hiii [Enterococcus faecium E1071]
 gi|291597810|gb|EFF28947.1| ribonuclease hiii [Enterococcus faecium U0317]
          Length = 305

 Score = 35.8 bits (81), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 28/157 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHK---KREELYEKITSS 78
           V G DEVG G+  GP+ V A  +  + +      G+ DSK++      +  ++ +K    
Sbjct: 91  VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKKTIPY 150

Query: 79  AIISISSASHQYID-KHN-------IHKATLDAIYHAVENLQVIPRSALID--------- 121
            ++ +S   +  I  K+N       +H   +  +   +E  +  P + LID         
Sbjct: 151 KLLVLSPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIEPEK--PEAILIDQFTPEANFK 208

Query: 122 --GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVT 156
              R     L  + + V KG+   L++AAASII++ +
Sbjct: 209 KYARLEKNQLQEKLYFVTKGEQYHLAVAAASIISRAS 245


>gi|323128007|gb|ADX25304.1| ribonuclease HIII [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 299

 Score = 35.8 bits (81), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHK 66
            P+ G DEVG G+  G + V A  +DP +  F    G++DSK ++ +
Sbjct: 83  LPMIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKTLTDQ 129


>gi|251783283|ref|YP_002997588.1| ribonuclease HIII [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242391915|dbj|BAH82374.1| ribonuclease HIII [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 299

 Score = 35.8 bits (81), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 35/161 (21%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  +DP +  F    G++DSK ++ +        L EKI
Sbjct: 83  LPMIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKTLTDQTIRRIAPILEEKI 142

Query: 76  TSSAIISISSASHQYIDKHNIHKATL-------DAIYHAVENLQVIPRSALIDGRS---- 124
           +  +++      ++ + K   + A          AIY  ++   + P   +ID  +    
Sbjct: 143 SHKSLLLSPKKYNEMVGKDKPYNAVSVKVALHNQAIYLLLQE-GINPEKIVIDAFTSQSN 201

Query: 125 -----------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                       P  L  Q     K +S+ L++A +SIIA+
Sbjct: 202 YEKHLKKEKNHFPNPLTFQE----KAESLYLAVAVSSIIAR 238


>gi|332364401|gb|EGJ42175.1| ribonuclease HIII [Streptococcus sanguinis SK355]
          Length = 296

 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 8/66 (12%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELY----EKI 75
           + + G DEVG G+  G + V A  + PN   F    G+ DSK ++  K  +L     EKI
Sbjct: 81  FALIGTDEVGNGSYFGGLAVVASFVTPNQHDFLRKLGVGDSKTLNDSKIRQLAPVLKEKI 140

Query: 76  TSSAII 81
              A++
Sbjct: 141 AHQALL 146


>gi|322377071|ref|ZP_08051563.1| ribonuclease HIII [Streptococcus sp. M334]
 gi|321281784|gb|EFX58792.1| ribonuclease HIII [Streptococcus sp. M334]
          Length = 293

 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREEL 71
            P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +L
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQL 129


>gi|322391517|ref|ZP_08064986.1| ribonuclease HIII [Streptococcus peroris ATCC 700780]
 gi|321145600|gb|EFX40992.1| ribonuclease HIII [Streptococcus peroris ATCC 700780]
          Length = 293

 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 8/65 (12%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +L     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVASFVTPDQHHFLQKLGVGDSKSLTDQKIRQLAPLLKEKIQ 138

Query: 77  SSAII 81
             A++
Sbjct: 139 HQALL 143


>gi|50291445|ref|XP_448155.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527466|emb|CAG61106.1| unnamed protein product [Candida glabrata]
          Length = 307

 Score = 35.4 bits (80), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 39/190 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL-----DPNNIP-FGINDSKKISHKKREELYEKITSSA 79
           + G+DE GRG + GP+V           D   IP +  +DSKK++   R  L+ K+ +  
Sbjct: 42  ILGVDEAGRGPVMGPMVYGISYCTKEYQDKVLIPKYTFDDSKKLTDPVRRMLFSKMYAGE 101

Query: 80  I------------ISISSASHQY--IDKHNIHKATLDAIYHAVENLQVIPRSALID---- 121
           I              IS+   +Y     +N+++   D     ++   VI R   ID    
Sbjct: 102 IDQVGYATTAITPYDISTGMSRYPPSRNYNLNEQAHDVTMALIQG--VIDRGVSIDHVYV 159

Query: 122 ---------GRSIPEDLPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171
                     R + +  P   F V K  DS+   ++ AS++AKVTRD L+  + ++ PD 
Sbjct: 160 DTVGPPASYQRKLEDRFPSIKFTVAKKADSLYCVVSVASVVAKVTRDLLIE-SLRRTPDE 218

Query: 172 GFDSHVGYPT 181
              S  GYP+
Sbjct: 219 IMGS--GYPS 226


>gi|71408510|ref|XP_806655.1| ribonuclease H [Trypanosoma cruzi strain CL Brener]
 gi|70870462|gb|EAN84804.1| ribonuclease H, putative [Trypanosoma cruzi]
          Length = 324

 Score = 35.4 bits (80), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 26  VAGIDEVGRGALAGPVVV--AAIILDPNNIPF---GINDSKKISHKKREELYEKI----T 76
           V GIDE GRG + GP+V   A I L  ++      G+NDSK +   +R+++  K+    T
Sbjct: 41  VLGIDEAGRGPVIGPMVYTGAMIALHEHDRLLEYCGVNDSKLLGENQRKDVLCKLQELKT 100

Query: 77  SSAIISISSASHQYIDKHNIHKATLDAIYH 106
            S    + + +        IH   L+ + H
Sbjct: 101 FSTFTVVVTPAEIAAAMTGIHGKNLNTLSH 130


>gi|322827961|gb|EFZ31928.1| ribonuclease H, putative [Trypanosoma cruzi]
          Length = 324

 Score = 35.4 bits (80), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 26  VAGIDEVGRGALAGPVVV--AAIILDPNNIPF---GINDSKKISHKKREELYEKI----T 76
           V GIDE GRG + GP+V   A I L  ++      G+NDSK +   +R+++  K+    T
Sbjct: 41  VLGIDEAGRGPVIGPMVYTGAMIALHEHDRLLEYCGVNDSKLLGENQRKDVLCKLQKLKT 100

Query: 77  SSAIISISSASHQYIDKHNIHKATLDAIYH 106
            S    + + +        IH   L+ + H
Sbjct: 101 FSTFTVVVTPAEIAAAMTGIHGKNLNTLSH 130


>gi|332686770|ref|YP_004456544.1| ribonuclease HIII [Melissococcus plutonius ATCC 35311]
 gi|332370779|dbj|BAK21735.1| ribonuclease HIII [Melissococcus plutonius ATCC 35311]
          Length = 309

 Score = 35.4 bits (80), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKI 75
           V G DEVG G+  GP+ V A  +  +NI      G+ DSK ++  +  +L E +
Sbjct: 93  VLGSDEVGNGSYFGPLTVCAAYVAKDNIKMLKAAGVKDSKNLTDNRIMQLAEML 146


>gi|149037819|gb|EDL92179.1| ribonuclease H2, large subunit, isoform CRA_c [Rattus norvegicus]
 gi|149037822|gb|EDL92182.1| ribonuclease H2, large subunit, isoform CRA_c [Rattus norvegicus]
          Length = 158

 Score = 35.0 bits (79), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKI 75
          V G+DE GRG + GP+V A      + +       + DSK ++  +RE L+ K+
Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKM 83


>gi|219850709|ref|YP_002465141.1| ribonuclease HIII [Methanosphaerula palustris E1-9c]
 gi|219544968|gb|ACL15418.1| ribonuclease HIII [Methanosphaerula palustris E1-9c]
          Length = 318

 Score = 35.0 bits (79), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIISI 83
           G DE G+G   GP+VVAA+ LD          G+ DSK +S ++   L   +   A +SI
Sbjct: 108 GSDESGKGDYFGPLVVAAVCLDQQGAARLRAAGVTDSKALSDQENLSLASVVRKVA-VSI 166

Query: 84  S 84
           S
Sbjct: 167 S 167


>gi|331266981|ref|YP_004326611.1| ribonuclease HIII [Streptococcus oralis Uo5]
 gi|326683653|emb|CBZ01271.1| ribonuclease HIII [Streptococcus oralis Uo5]
          Length = 293

 Score = 35.0 bits (79), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 25/151 (16%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKITSSA 79
           G DEVG G+  G + V A  + P+   F    G+ DSK ++ +K  +    L EKI   A
Sbjct: 82  GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQLAPILKEKIQHQA 141

Query: 80  IISISSASHQYI-DKHNIHKATL----DAIYHAVENLQVIPRSALIDGRSIPED------ 128
           ++   S  ++ I +++N     +     AI+  ++   V P   +ID  + P++      
Sbjct: 142 LLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQK-GVQPEKIVIDAFTSPKNYDKYLA 200

Query: 129 -----LPCQAFAVIKGDSISLSIAAASIIAK 154
                 P +     K +   L++A +SIIA+
Sbjct: 201 QEANRFPNKITLEEKAEGKYLAVAVSSIIAR 231


>gi|46107902|ref|XP_381010.1| hypothetical protein FG00834.1 [Gibberella zeae PH-1]
          Length = 338

 Score = 35.0 bits (79), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 56/187 (29%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDS----------------------KKISH 65
           G+DE GRG + GP+V     L     P  ++DS                       +I  
Sbjct: 63  GVDEAGRGPVLGPMVYGVFFL-----PISLSDSLLRETHHFDDSKVLKPAVRSDLMRILC 117

Query: 66  KKREELYEKITSSAIISISS----ASHQYIDKHNIHKATLDA-------IYHAVENLQVI 114
               +LYE     A  S+S+    A+    + +N++   +DA       +Y A  N+Q I
Sbjct: 118 TPGSDLYESC-GWATASLSARDIGANMYRPNAYNLNAQAMDATVDLIKAVYAAGVNVQEI 176

Query: 115 PRSALIDGRSIPEDLPCQA-----FAVIK------GDSISLSIAAASIIAKVTRDRLMRI 163
                +D  +I +    QA     F  +K       DS+   ++AAS+ AKVTRD  + +
Sbjct: 177 ----FVD--TIGQPAAYQAKLQRIFPTVKIIVAKKADSLYPCVSAASVCAKVTRDAALEV 230

Query: 164 AHKKYPD 170
             +   D
Sbjct: 231 LFEARAD 237


>gi|145536391|ref|XP_001453923.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124421656|emb|CAK86526.1| unnamed protein product [Paramecium tetraurelia]
          Length = 3642

 Score = 35.0 bits (79), Expect = 6.8,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 15/127 (11%)

Query: 62   KISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
            K S  K E L       AI  +++ +  YID   I+K +       ++N+Q+      +D
Sbjct: 2808 KTSQNKFESL---AIQEAIEKVNTVNETYIDMIIINKQSAQWQIELLKNMQIDIEFINLD 2864

Query: 122  GRSIPEDLPCQAFAVIKGDSISLSIAA--ASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
             R++ +DL      +IK DSI L I +    I   +  D + RI H K        H+ Y
Sbjct: 2865 KRNVEQDL-----QIIKSDSIDLVITSDIEDINKLLDLDFVQRIKHLKK-----QLHISY 2914

Query: 180  PTAKHQQ 186
               K +Q
Sbjct: 2915 TKEKAKQ 2921


>gi|71896929|ref|NP_001025921.1| protein NEDD1 [Gallus gallus]
 gi|60098671|emb|CAH65166.1| hypothetical protein RCJMB04_5d16 [Gallus gallus]
          Length = 671

 Score = 35.0 bits (79), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 6/74 (8%)

Query: 32  VGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK----REELYEKITSSAIISISSAS 87
           +  G+L+G +++ ++  + ++ PFG N S+ I H K    ++ L   ++ S  +++   +
Sbjct: 134 IASGSLSGEIILHSVTTNLSSTPFGYNSSQPIRHLKYSSFKKSLLGSVSDSGNVTLWDVN 193

Query: 88  HQ--YIDKHNIHKA 99
            Q  Y +  N HKA
Sbjct: 194 TQNPYRNFENTHKA 207


>gi|326203823|ref|ZP_08193685.1| ribonuclease HIII [Clostridium papyrosolvens DSM 2782]
 gi|325985921|gb|EGD46755.1| ribonuclease HIII [Clostridium papyrosolvens DSM 2782]
          Length = 302

 Score = 35.0 bits (79), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 15/97 (15%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-----PFGINDSKKISHKKREELYEKI 75
           K ++P  G DE G+G   GP+V  A +++ +         G+ DSKK+S  +      KI
Sbjct: 84  KTVFPRIGSDESGKGDFFGPLVTVAFLIENDKQVIELEKIGVRDSKKVSDNRI-----KI 138

Query: 76  TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ 112
            S  I  I +      DK  I     + +Y  ++NL 
Sbjct: 139 ISQQIQEIGN-----FDKILITPIKYNELYDKIKNLN 170


>gi|76798409|ref|ZP_00780650.1| ribonuclease HIII [Streptococcus agalactiae 18RS21]
 gi|76586241|gb|EAO62758.1| ribonuclease HIII [Streptococcus agalactiae 18RS21]
          Length = 286

 Score = 35.0 bits (79), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 8/93 (8%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE 70
           E+   E    P+ G DEVG G+  G + V A  + P +  +    G+ DSK ++ +K ++
Sbjct: 61  ESCSSESQDIPIIGTDEVGNGSYFGGLAVVASFVTPKDHAYLKKLGVGDSKTLTDQKIKQ 120

Query: 71  ---LYEK-ITSSAIISISSASHQYIDKHNIHKA 99
              L EK I   A++      +Q +  +N H A
Sbjct: 121 IAPLLEKAIPHKALLLSPQKYNQVVSPNNKHNA 153


>gi|193216613|ref|YP_001999855.1| ribonuclease HIII [Mycoplasma arthritidis 158L3-1]
 gi|193001936|gb|ACF07151.1| ribonuclease HIII [Mycoplasma arthritidis 158L3-1]
          Length = 236

 Score = 34.7 bits (78), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 34/182 (18%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA---I 80
           G+DE G G    PV+  +  +   N+      G+ DSK +   K  EL  K+ +      
Sbjct: 13  GVDETGVGDYFTPVISVSCFIPKTNLELVKELGVKDSKLLKENKIIELASKLKTLVKWKS 72

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHA--VEN-LQVIPR--SALID----GRSIPED--L 129
           +++S A +  +    I+   +  + H+  + N L+V+ +    L+D     R + E+  +
Sbjct: 73  LTLSQAGYNKLISAKINNNEIKTLIHSKTINNLLKVLDQKVDVLVDQYTISRQVYENHLI 132

Query: 130 PCQA-------------FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
             Q+             +   K +S SL++A+ASIIA   R  L+     +   Y F+  
Sbjct: 133 KLQSIKWLDFQKPNATIYLTTKAESKSLAVASASIIA---RSILLEKIKAQREQYNFNFS 189

Query: 177 VG 178
           +G
Sbjct: 190 LG 191


>gi|73916756|gb|AAZ93246.1| RNase HII [Streptococcus pneumoniae]
          Length = 291

 Score = 34.7 bits (78), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  +  +   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVAAFVTSDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|22537861|ref|NP_688712.1| ribonuclease HIII [Streptococcus agalactiae 2603V/R]
 gi|76787270|ref|YP_330330.1| ribonuclease HIII [Streptococcus agalactiae A909]
 gi|77405976|ref|ZP_00783055.1| ribonuclease HIII [Streptococcus agalactiae H36B]
 gi|77409445|ref|ZP_00786139.1| ribonuclease HIII [Streptococcus agalactiae COH1]
 gi|73917857|sp|Q8DXX3|RNH3_STRA5 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|123601321|sp|Q3JZH3|RNH3_STRA1 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|22534757|gb|AAN00585.1|AE014270_3 ribonuclease HIII [Streptococcus agalactiae 2603V/R]
 gi|76562327|gb|ABA44911.1| ribonuclease HIII [Streptococcus agalactiae A909]
 gi|77171937|gb|EAO75112.1| ribonuclease HIII [Streptococcus agalactiae COH1]
 gi|77175428|gb|EAO78218.1| ribonuclease HIII [Streptococcus agalactiae H36B]
          Length = 297

 Score = 34.7 bits (78), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 8/93 (8%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE 70
           E+   E    P+ G DEVG G+  G + V A  + P +  +    G+ DSK ++ +K ++
Sbjct: 72  ESCSSESQDIPIIGTDEVGNGSYFGGLAVVASFVTPKDHAYLKKLGVGDSKTLTDQKIKQ 131

Query: 71  ---LYEK-ITSSAIISISSASHQYIDKHNIHKA 99
              L EK I   A++      +Q +  +N H A
Sbjct: 132 IAPLLEKAIPHKALLLSPQKYNQVVSPNNKHNA 164


>gi|148993944|ref|ZP_01823314.1| ribonuclease HIII [Streptococcus pneumoniae SP9-BS68]
 gi|168488094|ref|ZP_02712293.1| ribonuclease hiii [Streptococcus pneumoniae SP195]
 gi|147927533|gb|EDK78560.1| ribonuclease HIII [Streptococcus pneumoniae SP9-BS68]
 gi|183572945|gb|EDT93473.1| ribonuclease hiii [Streptococcus pneumoniae SP195]
 gi|332075249|gb|EGI85719.1| ribonuclease HIII [Streptococcus pneumoniae GA17570]
          Length = 293

 Score = 34.7 bits (78), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  +  +   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVAAFVTSDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|15674239|ref|NP_268414.1| ribonuclease HIII [Lactococcus lactis subsp. lactis Il1403]
 gi|281492933|ref|YP_003354913.1| ribonuclease HIII [Lactococcus lactis subsp. lactis KF147]
 gi|20978735|sp|Q9CDG3|RNH3_LACLA RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|12725328|gb|AAK06355.1|AE006455_1 ribonuclease HII [Lactococcus lactis subsp. lactis Il1403]
 gi|281376585|gb|ADA66071.1| Ribonuclease HIII [Lactococcus lactis subsp. lactis KF147]
          Length = 292

 Score = 34.7 bits (78), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKK 67
           G DEVG G+  G ++V A  +   N+ F    G+ DSKK++ +K
Sbjct: 80  GTDEVGNGSYFGGLMVTASFVSEENLNFLKEIGVADSKKLTDEK 123


>gi|323490479|ref|ZP_08095686.1| ribonuclease HIII [Planococcus donghaensis MPA1U2]
 gi|323395883|gb|EGA88722.1| ribonuclease HIII [Planococcus donghaensis MPA1U2]
          Length = 309

 Score = 34.7 bits (78), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 25/155 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREEL---YEKITSS 78
           V G DE G G   GP+ VAA  +  + +      G+ DSK+++     ++    ++  + 
Sbjct: 91  VLGSDETGTGDFFGPITVAACFVPSDKVELAYELGVKDSKQLTDDWMRKVAPDLKRAFAH 150

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI-------PRSALIDG---RSI--- 125
           +++++ +  +  +      +  + A+ H      V+       P + LID    RSI   
Sbjct: 151 SVLTLKNDKYNKVQAQGWSQGKIKALLHNQALKHVLAKIAPEKPDAILIDQFAERSIYYK 210

Query: 126 -----PEDLPCQAFAVIKGDSISLSIAAASIIAKV 155
                 E +        K + + +S+A ASIIA+V
Sbjct: 211 HIKEETEIVRENVLFSTKAEGLHVSVACASIIARV 245


>gi|25011806|ref|NP_736201.1| ribonuclease HIII [Streptococcus agalactiae NEM316]
 gi|77413664|ref|ZP_00789848.1| ribonuclease HIII [Streptococcus agalactiae 515]
 gi|73917856|sp|Q8E3J2|RNH3_STRA3 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|24413347|emb|CAD47426.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160264|gb|EAO71391.1| ribonuclease HIII [Streptococcus agalactiae 515]
          Length = 297

 Score = 34.7 bits (78), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE 70
           E+   E    P+ G DEVG G+  G + V A  + P +  +    G+ DSK ++ +K ++
Sbjct: 72  ESCSSETQDIPIIGTDEVGNGSYFGGLAVVASFVTPKDHAYLKKLGVGDSKTLTDQKIKQ 131

Query: 71  L 71
           +
Sbjct: 132 I 132


>gi|168490684|ref|ZP_02714827.1| ribonuclease hiii [Streptococcus pneumoniae CDC0288-04]
 gi|73916720|gb|AAZ93228.1| RNase HII [Streptococcus pneumoniae]
 gi|183574806|gb|EDT95334.1| ribonuclease hiii [Streptococcus pneumoniae CDC0288-04]
 gi|332202313|gb|EGJ16382.1| ribonuclease HIII [Streptococcus pneumoniae GA41317]
          Length = 290

 Score = 34.7 bits (78), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 9/81 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75
            P+ G DEVG G+  G + V A  +  +   F    G+ DSK ++ +K  +    L EKI
Sbjct: 78  LPLIGTDEVGNGSYFGGLAVVAAFVTSDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHN 95
              A++   S  ++ I D++N
Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158


>gi|77412143|ref|ZP_00788466.1| ribonuclease HIII [Streptococcus agalactiae CJB111]
 gi|77161803|gb|EAO72791.1| ribonuclease HIII [Streptococcus agalactiae CJB111]
          Length = 297

 Score = 34.7 bits (78), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 8/93 (8%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE 70
           E+   E    P+ G DEVG G+  G + V A  + P +  +    G+ DSK ++ +K ++
Sbjct: 72  ESCSSESQDIPIIGTDEVGNGSYFGGLAVVASFVTPKDHAYLKKLGVGDSKTLTDQKIKQ 131

Query: 71  ---LYEK-ITSSAIISISSASHQYIDKHNIHKA 99
              L EK I   A++      +Q +  +N H A
Sbjct: 132 TAPLLEKAIPHKALLLSPQKYNQVVGPNNKHNA 164


>gi|148673842|gb|EDL05789.1| mCG129830, isoform CRA_b [Mus musculus]
          Length = 142

 Score = 34.7 bits (78), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKI 75
          V G+DE GRG + GP+V A      + +       + DSK ++  +RE L+ K+
Sbjct: 1  VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKM 54


Searching..................................................done


Results from round 2




>gi|254781076|ref|YP_003065489.1| ribonuclease HII [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040753|gb|ACT57549.1| ribonuclease HII [Candidatus Liberibacter asiaticus str. psy62]
          Length = 209

 Score =  340 bits (873), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 209/209 (100%), Positives = 209/209 (100%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS
Sbjct: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI
Sbjct: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP
Sbjct: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209
           TAKHQQVIKEKGPSCIHRLTFRPLRNLSV
Sbjct: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209


>gi|328957389|ref|YP_004374775.1| ribonuclease HII [Carnobacterium sp. 17-4]
 gi|328673713|gb|AEB29759.1| ribonuclease HII [Carnobacterium sp. 17-4]
          Length = 257

 Score =  288 bits (737), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 99/202 (49%), Positives = 127/202 (62%), Gaps = 3/202 (1%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
            ++   ++E    E+    VAGIDEVGRG LAGPVV AA+IL  +     INDSK++S  
Sbjct: 56  KQQEMLQIEQFFWEQGTQFVAGIDEVGRGPLAGPVVAAAVILPQDFNVLEINDSKQLSSA 115

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           KRE L+++I  SA+ I I    HQ IDK NI++AT  A+  AVE L   P   LID   +
Sbjct: 116 KREVLFDQIQESALAIGIGIKDHQVIDKVNIYQATKLAMIEAVEQLPQQPEQLLIDAMHL 175

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  +P ++F  IKGDS SLSIAAASIIAKVTRDR+M      YP YGF  + GY T  H 
Sbjct: 176 PITIPQESF--IKGDSKSLSIAAASIIAKVTRDRMMAEYDTLYPGYGFSKNAGYGTKIHL 233

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
           + +++ G   IHR TF P++NL
Sbjct: 234 EGLEKHGICPIHRKTFAPVKNL 255


>gi|116250704|ref|YP_766542.1| ribonuclease HII [Rhizobium leguminosarum bv. viciae 3841]
 gi|166226643|sp|Q1MKS7|RNH2_RHIL3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|115255352|emb|CAK06427.1| putative ribonuclease HII [Rhizobium leguminosarum bv. viciae 3841]
          Length = 229

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 107/206 (51%), Positives = 145/206 (70%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           +  ++ P  P F LE   R+   WPVAG DE GRG LAGPVV AA+ILDP  IP G+NDS
Sbjct: 11  LLFDTAPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDS 70

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K++S ++REEL+ +I ++A +SI+S+S   ID+ +I KA+LDA+  A+ +L +     L 
Sbjct: 71  KQLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAIPASYVLT 130

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG  +P  L C   AV+KGD+ S+SIAAASI+AKVTRDR+M  AH  +PDYGF +HVGY 
Sbjct: 131 DGLDVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMARAHSVFPDYGFAAHVGYG 190

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206
           TA+H+  I+  GP  +HR++FRPLR 
Sbjct: 191 TAQHRAGIERHGPCSLHRMSFRPLRK 216


>gi|241203307|ref|YP_002974403.1| ribonuclease HII [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240857197|gb|ACS54864.1| Ribonuclease H [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 229

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 107/206 (51%), Positives = 145/206 (70%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           +  ++ P  P F LE   R+   WPVAG DE GRG LAGPVV AA+ILDP  IP G+NDS
Sbjct: 11  LLFDTAPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPRRIPEGLNDS 70

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K++S ++REEL+ +I ++A +SI+S+S   ID+ +I KA+LDA+  A+ +L +     L 
Sbjct: 71  KQLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAIPASYVLT 130

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG  +P  L C   AV+KGD+ S+SIAAASI+AKVTRDR+M  AH  +PDYGF +HVGY 
Sbjct: 131 DGLDVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMARAHSVFPDYGFAAHVGYG 190

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206
           TA+H+  I+  GP  +HR++FRPLR 
Sbjct: 191 TAQHRAGIERHGPCSLHRMSFRPLRK 216


>gi|327190563|gb|EGE57656.1| ribonuclease HII protein [Rhizobium etli CNPAF512]
          Length = 229

 Score =  285 bits (730), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 107/206 (51%), Positives = 145/206 (70%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           +  ++ P  P F LE   R+   WPVAG DE GRG LAGPVV AA+ILDP  IP G+NDS
Sbjct: 11  LLFDTAPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDS 70

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K++S ++REEL+ +I ++A +SI+S+S   ID+ +I KA+LDA+  A+ +L V     L 
Sbjct: 71  KQLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAVPASYVLT 130

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG  +P  L C   AV+KGD+ S+SIAAASI+AKVTRDR+M  AH  +PDYGF +H GY 
Sbjct: 131 DGLDVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMARAHNVFPDYGFAAHAGYG 190

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206
           TA+H+  I++ GP  +HR++FRPLR 
Sbjct: 191 TAQHRAGIEKHGPCSLHRMSFRPLRK 216


>gi|190890579|ref|YP_001977121.1| ribonuclease HII protein [Rhizobium etli CIAT 652]
 gi|238692497|sp|B3PRG0|RNH2_RHIE6 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|190695858|gb|ACE89943.1| ribonuclease HII protein [Rhizobium etli CIAT 652]
          Length = 229

 Score =  285 bits (729), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 107/206 (51%), Positives = 145/206 (70%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           +  ++ P  P F LE   R+   WPVAG DE GRG LAGPVV AA+ILDP  IP G+NDS
Sbjct: 11  LLFDTAPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDS 70

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K++S ++REEL+ +I ++A +SI+S+S   ID+ +I KA+LDA+  A+ +L V     L 
Sbjct: 71  KQLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAVPASYVLT 130

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG  +P  L C   AV+KGD+ S+SIAAASI+AKVTRDR+M  AH  +PDYGF +H GY 
Sbjct: 131 DGLDVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMARAHNVFPDYGFAAHAGYG 190

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206
           TA+H+  I++ GP  +HR++FRPLR 
Sbjct: 191 TAQHRTGIEKHGPCSLHRMSFRPLRK 216


>gi|86356514|ref|YP_468406.1| ribonuclease HII [Rhizobium etli CFN 42]
 gi|123512870|sp|Q2KBV7|RNH2_RHIEC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|86280616|gb|ABC89679.1| ribonuclease HII protein [Rhizobium etli CFN 42]
          Length = 229

 Score =  285 bits (729), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 106/206 (51%), Positives = 147/206 (71%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           +  +++P  P F+LE   R+   WPVAG DE GRG LAGPVV AA+ILDP  IP G+NDS
Sbjct: 11  LLFDTVPLVPDFKLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDS 70

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K++S ++REEL+ +I ++A +SI+S+S   ID+ +I KA+LDA+  A+ +L +     L 
Sbjct: 71  KQLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAIPASYVLT 130

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG  +P  L C   AV+KGD+ S+SIAAASI+AKVTRDR+M  AH  +PDYGF +H GY 
Sbjct: 131 DGLDVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMARAHNVFPDYGFAAHAGYG 190

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206
           TA+H+  I++ GP  +HR++FRPLR 
Sbjct: 191 TAQHRAGIEKHGPCSLHRMSFRPLRK 216


>gi|315122464|ref|YP_004062953.1| ribonuclease HII [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495866|gb|ADR52465.1| ribonuclease HII [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 209

 Score =  284 bits (728), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 158/200 (79%), Positives = 181/200 (90%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E+P+FE E MVR+K MWPVAGIDEVGRGALAG VVVAAIILDPNNIP GINDSKKI  KK
Sbjct: 8   EKPNFEFEIMVRQKKMWPVAGIDEVGRGALAGSVVVAAIILDPNNIPPGINDSKKIPPKK 67

Query: 68  REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           RE LYEKI +SAI+SI+SA ++YID+HNIHKATLD +Y A+ NL++ PRS LIDGRSIPE
Sbjct: 68  REYLYEKIINSAIVSIASAGNRYIDQHNIHKATLDTMYRAINNLKITPRSVLIDGRSIPE 127

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           +LPCQAFA+IKGDS SLSIAAASI+AKVTRDRLM++AHKKYPDYGFDSHVGYPT KH+Q 
Sbjct: 128 NLPCQAFAIIKGDSSSLSIAAASIVAKVTRDRLMKMAHKKYPDYGFDSHVGYPTVKHRQA 187

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           IKEKGPS IHR++FRPL++L
Sbjct: 188 IKEKGPSRIHRMSFRPLKDL 207


>gi|126724759|ref|ZP_01740602.1| ribonuclease HII [Rhodobacterales bacterium HTCC2150]
 gi|126705923|gb|EBA05013.1| ribonuclease HII [Rhodobacterales bacterium HTCC2150]
          Length = 209

 Score =  284 bits (728), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 99/198 (50%), Positives = 137/198 (69%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P +  E    +K +  VAG+DEVGRG LAGPV  AA+ILDP+NIP G+NDSKK+S KKR+
Sbjct: 6   PDYSFERAAIDKGIKIVAGVDEVGRGPLAGPVTAAAVILDPDNIPEGLNDSKKLSAKKRD 65

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L+++I + A++SI+ AS   ID+ NI +A+  A+  A++ L  +P+ ALIDGR IP++ 
Sbjct: 66  LLFDQIMNVAMVSIAHASVAEIDEINIRQASHLAMVRAIQGLDQLPQLALIDGRDIPKET 125

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           PC   A+IKGD  S+SIAAASI+AKVTRDRLM    + +P YG+D + GYPT  H   + 
Sbjct: 126 PCSGQAIIKGDGKSMSIAAASIVAKVTRDRLMVDLAQHHPGYGWDKNAGYPTKSHIAALN 185

Query: 190 EKGPSCIHRLTFRPLRNL 207
           E G +  HR +F P+  +
Sbjct: 186 ELGVTQHHRCSFGPVHKM 203


>gi|83941807|ref|ZP_00954269.1| ribonuclease HII [Sulfitobacter sp. EE-36]
 gi|83847627|gb|EAP85502.1| ribonuclease HII [Sulfitobacter sp. EE-36]
          Length = 238

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 87/199 (43%), Positives = 131/199 (65%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +P FE E     +    VAG+DEVGRG LAGPV  AA++LDP+ IP G+NDSKK++   R
Sbjct: 35  KPDFEFERAAHARGFERVAGVDEVGRGPLAGPVTAAAVVLDPDRIPEGLNDSKKLTKTAR 94

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           E LYE++   A +S++ AS + I++ NI +A+  A+  A+E L+     ALIDG  IP D
Sbjct: 95  ERLYEELLQVADVSVAHASVEEIEELNILRASHLAMLRALEGLKTPADYALIDGNMIPRD 154

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L   A  V+KGD+ S SI+AASI AK+ RD +M    +++P YG+++++GY + KH + +
Sbjct: 155 LTLPAETVVKGDARSQSISAASIAAKICRDCVMLSLAQQHPGYGWETNMGYGSKKHMEAL 214

Query: 189 KEKGPSCIHRLTFRPLRNL 207
           ++ G +  HR  F+P+ N+
Sbjct: 215 QKIGVTPHHRRLFKPVHNM 233


>gi|209548122|ref|YP_002280039.1| ribonuclease HII [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|238056781|sp|B5ZS20|RNH2_RHILW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|209533878|gb|ACI53813.1| Ribonuclease H [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 229

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 108/207 (52%), Positives = 146/207 (70%)

Query: 2   FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61
              ++P  P F LE   R+   WPVAG DE GRG LAGPVV AA+ILDP  IP G+NDSK
Sbjct: 12  LFQAVPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDSK 71

Query: 62  KISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           ++S ++REEL+ +I ++A +SI+S+S   ID+ +I KA+LDA+  A+ +L +     L D
Sbjct: 72  QLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAIPASYVLTD 131

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           G  +P  L C   AVIKGD+ S+SIAAASI+AKVTRDR+M  AH  +PDYGF +HVGY T
Sbjct: 132 GLDVPPGLDCPGQAVIKGDARSVSIAAASIVAKVTRDRMMARAHHVFPDYGFAAHVGYGT 191

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNLS 208
           A+H+  I++ GP  +HR++FRPLR + 
Sbjct: 192 AQHRAGIEKLGPCSLHRMSFRPLRKVE 218


>gi|182677913|ref|YP_001832059.1| ribonuclease H [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633796|gb|ACB94570.1| Ribonuclease H [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 210

 Score =  281 bits (720), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 100/200 (50%), Positives = 132/200 (66%), Gaps = 1/200 (0%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           S P +P F  E  +R++    +AGIDEVGRG LAGPV  AA+ILDP N+P G+NDSK +S
Sbjct: 7   SNPSQPDFTFEKRLRKRGFTLIAGIDEVGRGPLAGPVTAAAVILDPKNLPQGLNDSKMLS 66

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            ++RE LY+ I + A+ ++I+      ID+ NI +ATL A+   +  L + P   L+DG 
Sbjct: 67  AEQREALYDLILARALAVAIACVGPGEIDRINIRQATLTAMRRTLPALALAPHYVLVDGN 126

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +PEDL C    +IKGD+ SLSIAAASI+AKV RDRLM+     YP YGF++HVGY T  
Sbjct: 127 DLPEDLGCPGETIIKGDARSLSIAAASIVAKVARDRLMQRLSALYPAYGFENHVGYATQA 186

Query: 184 HQQVIKEKGPSCIHRLTFRP 203
           H   I+  GP  IHRL+F P
Sbjct: 187 HLTAIEAYGPCPIHRLSFSP 206


>gi|84687971|ref|ZP_01015835.1| ribonuclease HII [Maritimibacter alkaliphilus HTCC2654]
 gi|84664003|gb|EAQ10503.1| ribonuclease HII [Rhodobacterales bacterium HTCC2654]
          Length = 208

 Score =  281 bits (720), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 94/202 (46%), Positives = 133/202 (65%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           + + P +  E     + +  VAG+DEVGRG LAGPV  AA+IL P+NIP G+NDSKK+S 
Sbjct: 1   MTDGPDYSYETAAFARGLARVAGVDEVGRGPLAGPVTAAAVILGPDNIPDGLNDSKKLSA 60

Query: 66  KKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           KKR+ L++ I + A + I+ A+ + ID +NI +A+  A+  AVE L  +P   LIDG  I
Sbjct: 61  KKRDALFDAIMAGAQVGIAHATVEEIDTYNILRASHIAMLRAVEALGTVPDHLLIDGNLI 120

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P      A AVIKGD  SLSIAAASI+AKVTRDR+M    +++P YG++ + GYP+  H 
Sbjct: 121 PRGCTVSAEAVIKGDGKSLSIAAASIVAKVTRDRIMVDLAQQHPGYGWERNAGYPSKSHI 180

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
             ++E G +  HR +F+P+ N+
Sbjct: 181 SALQELGVTPHHRRSFKPVHNI 202


>gi|229061440|ref|ZP_04198785.1| Ribonuclease [Bacillus cereus AH603]
 gi|228717863|gb|EEL69511.1| Ribonuclease [Bacillus cereus AH603]
          Length = 257

 Score =  280 bits (717), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y+
Sbjct: 62  YENELREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   AI I +   S Q ID+ NI++AT  A+  AV NL   P   LID   +P  +P  
Sbjct: 122 EIKEHAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPEYLLIDAMKLPTSIP-- 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+    KYP YGF+ H+GY T +H + I+  G
Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGGKYPAYGFEQHMGYGTKQHLEAIEVHG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 240 VLEEHRKSFAPIKDM 254


>gi|228954113|ref|ZP_04116142.1| Ribonuclease [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|229081092|ref|ZP_04213602.1| Ribonuclease [Bacillus cereus Rock4-2]
 gi|228702136|gb|EEL54612.1| Ribonuclease [Bacillus cereus Rock4-2]
 gi|228805679|gb|EEM52269.1| Ribonuclease [Bacillus thuringiensis serovar kurstaki str. T03a001]
          Length = 257

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y+
Sbjct: 62  YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   AI I +   S Q ID  NI++AT  A+  AV NL   P+  LID   +P   P  
Sbjct: 122 EIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G
Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPQYGFEQHMGYGTKQHLEAIQVHG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 240 VLDEHRKSFAPIKDM 254


>gi|218233890|ref|YP_002368638.1| ribonuclease HII [Bacillus cereus B4264]
 gi|226736814|sp|B7HDW0|RNH2_BACC4 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|218161847|gb|ACK61839.1| ribonuclease HII [Bacillus cereus B4264]
          Length = 257

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 93/195 (47%), Positives = 128/195 (65%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y+
Sbjct: 62  YENALREKGITYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   AI I +   S Q ID  NI++AT  A+  AV NL   P+  LID   +P   P  
Sbjct: 122 EIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP+YGF+ H+GY T +H + I+  G
Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEAIEVHG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 240 VLDEHRKSFAPIKDM 254


>gi|228922591|ref|ZP_04085891.1| Ribonuclease [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228837020|gb|EEM82361.1| Ribonuclease [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 254

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 94/195 (48%), Positives = 128/195 (65%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S  KRE  Y+
Sbjct: 59  YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYD 118

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   AI I +   S Q ID  NI++AT  A+  AV NL   P+  LID   +P   P  
Sbjct: 119 EIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 176

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP+YGF+ H+GY T +H + I+  G
Sbjct: 177 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEAIEVHG 236

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 237 VLDEHRKSFAPIKDM 251


>gi|228940925|ref|ZP_04103484.1| Ribonuclease [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228973854|ref|ZP_04134430.1| Ribonuclease [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228980444|ref|ZP_04140754.1| Ribonuclease [Bacillus thuringiensis Bt407]
 gi|228779264|gb|EEM27521.1| Ribonuclease [Bacillus thuringiensis Bt407]
 gi|228785879|gb|EEM33882.1| Ribonuclease [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228818761|gb|EEM64827.1| Ribonuclease [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|326941606|gb|AEA17502.1| ribonuclease HII [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 257

 Score =  279 bits (715), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 93/195 (47%), Positives = 129/195 (66%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y+
Sbjct: 62  YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   AI I +   S Q ID+ NI++AT  A+  AV NL   P+  LID   +P   P  
Sbjct: 122 EIKVQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSYTPQHLLIDAMKLPT--PIP 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP+YGF+ H+GY T +H + I+  G
Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEAIEVHG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 240 VLEEHRKSFAPIKDM 254


>gi|229071335|ref|ZP_04204558.1| Ribonuclease [Bacillus cereus F65185]
 gi|229180113|ref|ZP_04307457.1| Ribonuclease [Bacillus cereus 172560W]
 gi|228603322|gb|EEK60799.1| Ribonuclease [Bacillus cereus 172560W]
 gi|228711789|gb|EEL63741.1| Ribonuclease [Bacillus cereus F65185]
          Length = 254

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y+
Sbjct: 59  YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 118

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   AI I +   S Q ID  NI++AT  A+  AV NL   P+  LID   +P   P  
Sbjct: 119 EIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 176

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G
Sbjct: 177 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPQYGFEQHMGYGTKQHLEAIQVHG 236

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 237 VLDEHRKSFAPIKDM 251


>gi|229013020|ref|ZP_04170185.1| Ribonuclease [Bacillus mycoides DSM 2048]
 gi|229134645|ref|ZP_04263454.1| Ribonuclease [Bacillus cereus BDRD-ST196]
 gi|229168576|ref|ZP_04296299.1| Ribonuclease [Bacillus cereus AH621]
 gi|228614982|gb|EEK72084.1| Ribonuclease [Bacillus cereus AH621]
 gi|228648691|gb|EEL04717.1| Ribonuclease [Bacillus cereus BDRD-ST196]
 gi|228748274|gb|EEL98134.1| Ribonuclease [Bacillus mycoides DSM 2048]
          Length = 257

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y+
Sbjct: 62  YENELREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   AI I +   S Q ID+ NI++AT  A+  AV NL   P   LID   +P  +P  
Sbjct: 122 EIKEHAIAIGVGIISPQVIDEINIYQATKQAMLDAVANLSCTPEYLLIDAMKLPTSIP-- 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+    KYP YGF+ H+GY T +H + I+  G
Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGGKYPAYGFEQHMGYGTKQHLEAIEVHG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 240 VLEEHRKSFAPIKDM 254


>gi|330722242|gb|EGH00125.1| Ribonuclease HII [gamma proteobacterium IMCC2047]
          Length = 203

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 92/186 (49%), Positives = 119/186 (63%), Gaps = 2/186 (1%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81
           +  VAG+DEVGRG LAGPVV AA+IL+P N   G+ DSKK++ K+RE L+  I   A+  
Sbjct: 9   LGLVAGVDEVGRGPLAGPVVAAAVILNPANPIEGLADSKKLTEKRREALFPLIQERALAW 68

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
            I+ AS   ID+ NI  A+L A+  AV  L   P   L+DG   P DLP  + A+IKGDS
Sbjct: 69  CIARASEAEIDRLNILHASLLAMRRAVLGLSQQPDRVLVDGNRCP-DLPYPSEAIIKGDS 127

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
              +I+AASI+AKV RD  M    + YP YGF  H GYPTA+H Q +K  G + IHR +F
Sbjct: 128 KIEAISAASILAKVVRDNEMVAFEETYPGYGFAKHKGYPTAQHMQALKTLGVTPIHRRSF 187

Query: 202 RPLRNL 207
            P++NL
Sbjct: 188 APVKNL 193


>gi|229192006|ref|ZP_04318976.1| Ribonuclease [Bacillus cereus ATCC 10876]
 gi|228591557|gb|EEK49406.1| Ribonuclease [Bacillus cereus ATCC 10876]
          Length = 254

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 92/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y+
Sbjct: 59  YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 118

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   AI I +   S + ID  NI++AT  A+  AV NL   P+  LID   +P   P  
Sbjct: 119 EIKVQAIAIGVGIVSPEVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 176

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G
Sbjct: 177 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPQYGFEQHMGYGTKQHLEAIQVHG 236

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 237 VLDEHRKSFAPIKDM 251


>gi|83855284|ref|ZP_00948814.1| ribonuclease HII [Sulfitobacter sp. NAS-14.1]
 gi|83843127|gb|EAP82294.1| ribonuclease HII [Sulfitobacter sp. NAS-14.1]
          Length = 205

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 88/199 (44%), Positives = 131/199 (65%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +P FE E     +    VAG+DEVGRG LAGPV  AA++LDP+ IP G+NDSKK++   R
Sbjct: 2   KPDFEFERAAHARGFERVAGVDEVGRGPLAGPVTAAAVVLDPDRIPEGLNDSKKLTKPAR 61

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           E LYE++   A +S++ AS + I++ NI +A+  A+  A+E L+     ALIDG  IP D
Sbjct: 62  ERLYEELLQVADVSVAHASVEEIEELNILRASHLAMLRALEGLKTPADYALIDGNVIPRD 121

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L   A  VIKGD+ S SI+AASI AK+ RD +M    +++P YG+++++GY + KH + +
Sbjct: 122 LTLPAEPVIKGDARSQSISAASIAAKICRDCVMLSLAQQHPGYGWETNMGYGSKKHMEAL 181

Query: 189 KEKGPSCIHRLTFRPLRNL 207
           ++ G +  HR  F+P+ N+
Sbjct: 182 QKIGVTPHHRRLFKPVHNM 200


>gi|332686610|ref|YP_004456384.1| ribonuclease HII [Melissococcus plutonius ATCC 35311]
 gi|332370619|dbj|BAK21575.1| ribonuclease HII [Melissococcus plutonius ATCC 35311]
          Length = 260

 Score =  278 bits (713), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 94/196 (47%), Positives = 130/196 (66%), Gaps = 3/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E    ++    +AGIDEVGRG LAGPVV AA+IL  +   F +NDSK++S K RE L+
Sbjct: 64  QFEKKAMQEGYQAIAGIDEVGRGPLAGPVVAAAVILPEDCQIFELNDSKQLSAKTRERLF 123

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           ++I   A+ I I   SH+ ID+ NI++AT  A+  AV NLQ IP   LID  ++P  L  
Sbjct: 124 DEIGKKALAIGIGLVSHETIDEINIYQATKQAMIQAVANLQRIPDYLLIDAMTLP--LTT 181

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ SLSIAAASI+AKVTRDRLM     ++P YGF+ + GY T +H + +K++
Sbjct: 182 IQQSIIKGDARSLSIAAASIVAKVTRDRLMVHYAAEFPGYGFEKNAGYGTKEHLEGLKKQ 241

Query: 192 GPSCIHRLTFRPLRNL 207
           G S IHR TF P++ +
Sbjct: 242 GISPIHRKTFAPIKTM 257


>gi|229104399|ref|ZP_04235068.1| Ribonuclease [Bacillus cereus Rock3-28]
 gi|228679097|gb|EEL33305.1| Ribonuclease [Bacillus cereus Rock3-28]
          Length = 257

 Score =  278 bits (713), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 93/195 (47%), Positives = 129/195 (66%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA++L  N    G++DSKK+S  KRE  Y+
Sbjct: 62  YENALREKGITYIAGIDEVGRGPLAGPVVTAAVVLPDNFYIPGLDDSKKLSEAKRERFYD 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I + AI I +   S Q ID+ NI++AT  A+  AV NL   P+  LID   +P  +P  
Sbjct: 122 EIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPTSIP-- 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF  H+GY T +H + I+  G
Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPAYGFGQHMGYGTKQHLEAIEAHG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 240 VLEEHRKSFAPIKDM 254


>gi|118590790|ref|ZP_01548191.1| ribonuclease HII [Stappia aggregata IAM 12614]
 gi|118436766|gb|EAV43406.1| ribonuclease HII [Stappia aggregata IAM 12614]
          Length = 228

 Score =  278 bits (713), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 94/205 (45%), Positives = 133/205 (64%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           +F  + P+ P   +E          + G+DE GRG  AGPVV AA+ILD + +P G+NDS
Sbjct: 19  LFDLAFPDSPDLAVERKHAAAFDGRLCGVDEAGRGPWAGPVVTAAVILDYDRLPDGLNDS 78

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           KK++  +REEL+E+I +SA +S++SAS   ID  NI  ATL A+  AV +L ++P   L+
Sbjct: 79  KKLTEARREELFEQIVASAHVSLASASPATIDAVNIRTATLSAMVRAVNHLPLVPDYVLV 138

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DGR +P  L     A+IKGD   L +AAASI+AKVTRDR+M     ++PDYGF  H GY 
Sbjct: 139 DGRDVPLGLKQAGQALIKGDGRCLCVAAASIVAKVTRDRMMVHLDARFPDYGFAQHKGYG 198

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLR 205
             +HQQ ++  GP+  HR++F+P+R
Sbjct: 199 VPQHQQALERHGPTVHHRMSFKPVR 223


>gi|30021925|ref|NP_833556.1| ribonuclease HII [Bacillus cereus ATCC 14579]
 gi|39932341|sp|Q819W9|RNH2_BACCR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|29897481|gb|AAP10757.1| Ribonuclease HII [Bacillus cereus ATCC 14579]
          Length = 257

 Score =  278 bits (713), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y+
Sbjct: 62  YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   AI I +   S Q ID  NI++AT  A+  AV NL   P+  LID   +P   P  
Sbjct: 122 EIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+    KYP+YGF+ H+GY T +H + I+  G
Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGGKYPEYGFEQHMGYGTKQHLEAIEVHG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 240 VLDEHRKSFAPIKDM 254


>gi|325292105|ref|YP_004277969.1| Ribonuclease HII [Agrobacterium sp. H13-3]
 gi|325059958|gb|ADY63649.1| Ribonuclease HII [Agrobacterium sp. H13-3]
          Length = 224

 Score =  278 bits (713), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 104/197 (52%), Positives = 137/197 (69%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E   R+K +WPVAG DE GRG LAGPVV AA+ILDP+NIP G++DSKK++  KRE
Sbjct: 27  PDFSFELEARKKGLWPVAGTDEAGRGPLAGPVVAAAVILDPDNIPGGLDDSKKLTKLKRE 86

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L+ +I  ++I+S++S+    ID  NI +A+LDA+  AV  L++ P   L DGR  P  +
Sbjct: 87  SLFLQIMETSIVSVASSGPGLIDTMNILRASLDAMRRAVLGLEISPALVLADGRDKPPGI 146

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C++ AVIKGDS SLSIAAASIIAKVTRDR+M  A   +  YGF+ H GY T  H + I+
Sbjct: 147 TCESKAVIKGDSRSLSIAAASIIAKVTRDRMMERAGVVHSSYGFEGHAGYGTPAHLRAIE 206

Query: 190 EKGPSCIHRLTFRPLRN 206
             GP  +HR++FRPL+ 
Sbjct: 207 SHGPCPLHRMSFRPLKQ 223


>gi|229098306|ref|ZP_04229253.1| Ribonuclease [Bacillus cereus Rock3-29]
 gi|229117323|ref|ZP_04246701.1| Ribonuclease [Bacillus cereus Rock1-3]
 gi|228666223|gb|EEL21687.1| Ribonuclease [Bacillus cereus Rock1-3]
 gi|228685204|gb|EEL39135.1| Ribonuclease [Bacillus cereus Rock3-29]
          Length = 257

 Score =  278 bits (713), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 92/195 (47%), Positives = 129/195 (66%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G++DSKK+S  KRE  Y+
Sbjct: 62  YENALREKGITYIAGIDEVGRGPLAGPVVTAAVVLPDDFYIPGLDDSKKLSEAKRERFYD 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I + AI I +   S Q ID+ NI++AT  A+  AV NL   P+  LID   +P  +P  
Sbjct: 122 EIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPTSIP-- 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF  H+GY T +H + I+  G
Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPAYGFGQHMGYGTKQHLEAIEAHG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 240 VLEEHRKSFAPIKDM 254


>gi|228960053|ref|ZP_04121717.1| Ribonuclease [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|229047524|ref|ZP_04193114.1| Ribonuclease [Bacillus cereus AH676]
 gi|229111308|ref|ZP_04240861.1| Ribonuclease [Bacillus cereus Rock1-15]
 gi|229146408|ref|ZP_04274779.1| Ribonuclease [Bacillus cereus BDRD-ST24]
 gi|229152036|ref|ZP_04280231.1| Ribonuclease [Bacillus cereus m1550]
 gi|228631385|gb|EEK88019.1| Ribonuclease [Bacillus cereus m1550]
 gi|228637041|gb|EEK93500.1| Ribonuclease [Bacillus cereus BDRD-ST24]
 gi|228672084|gb|EEL27375.1| Ribonuclease [Bacillus cereus Rock1-15]
 gi|228723771|gb|EEL75126.1| Ribonuclease [Bacillus cereus AH676]
 gi|228799569|gb|EEM46522.1| Ribonuclease [Bacillus thuringiensis serovar pakistani str. T13001]
          Length = 254

 Score =  278 bits (713), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 93/195 (47%), Positives = 128/195 (65%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y+
Sbjct: 59  YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 118

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   AI I +   S Q ID  NI++AT  A+  AV NL   P+  LID   +P   P  
Sbjct: 119 EIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 176

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP+YGF+ H+GY T +H + I+  G
Sbjct: 177 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEAIEVHG 236

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 237 VLDEHRKSFAPIKDM 251


>gi|163941575|ref|YP_001646459.1| ribonuclease HII [Bacillus weihenstephanensis KBAB4]
 gi|229564282|sp|A9VT75|RNH2_BACWK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|163863772|gb|ABY44831.1| Ribonuclease H [Bacillus weihenstephanensis KBAB4]
          Length = 257

 Score =  278 bits (712), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y+
Sbjct: 62  YENELREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   AI I +   S Q ID+ NI++AT  A+  AV NL   P   LID   +P  +P  
Sbjct: 122 EIKDHAIAIGVGIISPQVIDEINIYQATKQAMLDAVANLSCTPEYLLIDAMKLPTSIP-- 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+    KYP YGF+ H+GY T +H + I+  G
Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGGKYPAYGFEQHMGYGTKQHLEAIEVHG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 240 VLEEHRKSFAPIKDM 254


>gi|222147705|ref|YP_002548662.1| ribonuclease HII [Agrobacterium vitis S4]
 gi|221734693|gb|ACM35656.1| ribonuclease HII [Agrobacterium vitis S4]
          Length = 279

 Score =  278 bits (712), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 105/196 (53%), Positives = 135/196 (68%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F LE   + K  WPVAG DE GRG LAGPVV AA+ILDP+ IP G+NDSKK++  KRE
Sbjct: 79  PDFSLEESFKAKGCWPVAGTDEAGRGPLAGPVVAAAVILDPDAIPDGLNDSKKLTAAKRE 138

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L+ +I ++A +SI+S+   +ID+ +I KA+LDA+  A   L + P   L DGR +P  L
Sbjct: 139 ALFIQILATATVSIASSGSDHIDRRDIRKASLDAMRRAAAGLSLAPAHLLCDGRDVPPGL 198

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C   AVIKGD+ SLSIAAASI+AKV RDR+M  A   +P YGFD+H GY T  HQ+ I 
Sbjct: 199 ICGGTAVIKGDARSLSIAAASIVAKVMRDRMMTRAALVFPQYGFDAHAGYGTKVHQKAIA 258

Query: 190 EKGPSCIHRLTFRPLR 205
           + GP  +HR++F PLR
Sbjct: 259 DHGPCPLHRMSFSPLR 274


>gi|255261565|ref|ZP_05340907.1| ribonuclease HII [Thalassiobium sp. R2A62]
 gi|255103900|gb|EET46574.1| ribonuclease HII [Thalassiobium sp. R2A62]
          Length = 205

 Score =  278 bits (711), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 93/197 (47%), Positives = 131/197 (66%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            FE E          V G+DEVGRG LAGPV  AA+ LDPN IP G+NDSKK+S KKR+ 
Sbjct: 4   DFEFERAAMADGALRVVGVDEVGRGPLAGPVTAAAVWLDPNAIPEGLNDSKKLSAKKRDA 63

Query: 71  LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           LY ++   A +SI+ A+ + ID+HNI +A+  A+  AVE L V P  ALIDG  +P   P
Sbjct: 64  LYAELLQVADVSIAHATVEEIDEHNILRASHIAMIRAVEGLAVAPDYALIDGNMVPRGFP 123

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            Q+  +IKGD+ S+SI+AASI+AKV RD +M    +++P+YG+DS+ GYP+  H+  + +
Sbjct: 124 IQSQTIIKGDARSVSISAASIMAKVCRDYVMVDLAQQHPEYGWDSNAGYPSKSHKNALLK 183

Query: 191 KGPSCIHRLTFRPLRNL 207
            G +  HR +F+P+ N+
Sbjct: 184 YGVTPHHRRSFKPVHNI 200


>gi|229129113|ref|ZP_04258086.1| Ribonuclease [Bacillus cereus BDRD-Cer4]
 gi|228654350|gb|EEL10215.1| Ribonuclease [Bacillus cereus BDRD-Cer4]
          Length = 254

 Score =  277 bits (710), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y+
Sbjct: 59  YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 118

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   AI I +   S Q ID  NI++AT  A+  AV NL   P+  LID   +P   P  
Sbjct: 119 EIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 176

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+    KYP+YGF+ H+GY T +H + I+  G
Sbjct: 177 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGGKYPEYGFEQHMGYGTKQHLEAIEVHG 236

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 237 VLDEHRKSFAPIKDM 251


>gi|126738666|ref|ZP_01754371.1| ribonuclease HII [Roseobacter sp. SK209-2-6]
 gi|126720465|gb|EBA17171.1| ribonuclease HII [Roseobacter sp. SK209-2-6]
          Length = 205

 Score =  277 bits (710), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 92/200 (46%), Positives = 125/200 (62%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E+P   LE   R+     +AG+DEVGRG LAGPV  AA+IL     P G+NDSKK+S KK
Sbjct: 2   EQPDDSLEQTARKNGYPRIAGVDEVGRGPLAGPVTAAAVILPLEGYPQGLNDSKKLSAKK 61

Query: 68  REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           R  L E+I  +A +SI+ AS + ID  NI KA+  A+  AV  L   P   LIDG  IP 
Sbjct: 62  RAVLAEEILQTAEVSIAEASVEEIDSINILKASHLAMERAVAALDPAPDYLLIDGNLIPA 121

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            L   A AVIKGD  S+SIAAASI+AK  RD  M    +++P YG++ + GYP+ +H++ 
Sbjct: 122 GLTIPAEAVIKGDGKSVSIAAASIVAKEARDECMVDLAQQFPGYGWEKNAGYPSKQHREA 181

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           ++E G +  HR +F+P+  +
Sbjct: 182 LQELGVTPHHRKSFKPVHKI 201


>gi|331701419|ref|YP_004398378.1| ribonuclease H [Lactobacillus buchneri NRRL B-30929]
 gi|329128762|gb|AEB73315.1| Ribonuclease H [Lactobacillus buchneri NRRL B-30929]
          Length = 257

 Score =  277 bits (709), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 86/199 (43%), Positives = 126/199 (63%), Gaps = 3/199 (1%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F+ E     + +  VAG+DEVGRG LAGPVV AA+IL  +     +NDSK+++  +R E
Sbjct: 59  RFKYERSFWHQGLQYVAGVDEVGRGPLAGPVVAAAVILPHDFDLVSVNDSKQLTPTQRAE 118

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L   I++ A+ + I S  +  ID+ NI++AT  A+  AVE+L   P   ++D   IP  +
Sbjct: 119 LAPLISAEALSVGIGSVDNHGIDELNIYQATRVAMKQAVESLTPQPDEIIVDAMQIP--V 176

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P +   +IKGD+ S+S++AASI+AKV RD LM    K+YP+Y F  + GY TAKH   +K
Sbjct: 177 PIRQTRLIKGDAKSISVSAASIVAKVYRDHLMDEYAKQYPEYDFPHNAGYGTAKHLAALK 236

Query: 190 EKGPSCIHRLTFRPLRNLS 208
           E GP+ IHR++F P++  S
Sbjct: 237 ELGPTPIHRMSFAPVKKFS 255


>gi|149183639|ref|ZP_01862056.1| ribonuclease HII [Bacillus sp. SG-1]
 gi|148848656|gb|EDL62889.1| ribonuclease HII [Bacillus sp. SG-1]
          Length = 258

 Score =  277 bits (709), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 91/197 (46%), Positives = 124/197 (62%), Gaps = 3/197 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +R++    +AGIDEVGRG LAGPVV AA+IL  +    GINDSKK+S K+RE  Y+
Sbjct: 63  FENELRDQGFELIAGIDEVGRGPLAGPVVAAAVILPADFCLLGINDSKKLSEKQREAFYQ 122

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            IT  AI  S    S Q ID+ NI++A+  A+  A+  L V P   LID   +    P  
Sbjct: 123 YITEEAIAWSTGIISPQEIDELNIYQASKKAMVTALNTLNVKPDHLLIDAMEL--GSPYP 180

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SIAAASI+AKVTRDR+M    + Y  YG + ++GY T +H + + E G
Sbjct: 181 EMSLIKGDARSISIAAASIVAKVTRDRMMEEYSQVYSGYGLEKNMGYGTKEHLEGLNEFG 240

Query: 193 PSCIHRLTFRPLRNLSV 209
           PS IHR +F P++ L +
Sbjct: 241 PSPIHRKSFAPVKELML 257


>gi|296504332|ref|YP_003666032.1| ribonuclease HII [Bacillus thuringiensis BMB171]
 gi|296325384|gb|ADH08312.1| ribonuclease HII [Bacillus thuringiensis BMB171]
          Length = 257

 Score =  277 bits (709), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 93/195 (47%), Positives = 128/195 (65%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y+
Sbjct: 62  YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   AI I +   S Q ID  NI++AT  A+  AV NL   P+  LID   +P   P  
Sbjct: 122 EIKVQAIAIGVGIVSPQIIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP+YGF+ H+GY T +H + I+  G
Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEAIEVHG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 240 VLDEHRNSFAPIKDM 254


>gi|260574050|ref|ZP_05842055.1| Ribonuclease H [Rhodobacter sp. SW2]
 gi|259023516|gb|EEW26807.1| Ribonuclease H [Rhodobacter sp. SW2]
          Length = 213

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 90/201 (44%), Positives = 124/201 (61%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           P  P F  E     +    VAG+DEVGRG LAGPV  AA+ L P +IP G+NDSKK+S  
Sbjct: 4   PPFPDFSFETAALARGARVVAGVDEVGRGPLAGPVTAAAVRLFPGSIPLGLNDSKKLSAA 63

Query: 67  KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           +RE L+  +   A +SI+ A+   ID+ NI +A+  A+  A+  L      ALIDG  +P
Sbjct: 64  RREALFHALMEQAQVSIAHATVAEIDELNILRASHLAMQRALAGLPEPCDHALIDGNLLP 123

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             L C A A++KGD  SLSIAAASIIAKVTRD +M    +++P YG++++ GYPT  H  
Sbjct: 124 RGLSCAAQAIVKGDGRSLSIAAASIIAKVTRDAIMVDLAQQHPGYGWEANAGYPTKAHLA 183

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            +   G +  HR +F+P+ N+
Sbjct: 184 ALLNLGVTPWHRRSFKPVHNI 204


>gi|294675759|ref|YP_003576374.1| ribonuclease HII [Rhodobacter capsulatus SB 1003]
 gi|294474579|gb|ADE83967.1| ribonuclease HII [Rhodobacter capsulatus SB 1003]
          Length = 211

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 86/202 (42%), Positives = 128/202 (63%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           +   P    E     +    +AG+DEVGRG L GPV  AA++LD + +P G+NDSKK+S 
Sbjct: 1   MSTAPDTRFEQAALARGFTRIAGVDEVGRGPLCGPVTAAAVVLDLSCLPEGLNDSKKLSA 60

Query: 66  KKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           K+R  L  +IT++A +S++ AS   ID  NI +A+  A+  A+E L+  P   LIDG  +
Sbjct: 61  KRRAALVAQITATADVSVAHASVAEIDALNILQASHLAMIRAIEGLKTPPDHVLIDGNRL 120

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P+ L   A A++KGD+ S+SIAAASI+AK  RD LM    ++YP YG++ + GYPT  H 
Sbjct: 121 PKALTISAEAIVKGDARSVSIAAASILAKEIRDALMVDLAQQYPGYGWERNAGYPTRDHL 180

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
           Q + + G + +HR +F+P+ N+
Sbjct: 181 QALLDLGVTPVHRRSFKPVHNI 202


>gi|83950881|ref|ZP_00959614.1| ribonuclease HII [Roseovarius nubinhibens ISM]
 gi|83838780|gb|EAP78076.1| ribonuclease HII [Roseovarius nubinhibens ISM]
          Length = 209

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 90/198 (45%), Positives = 133/198 (67%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P +  E     +    VAG+DEVGRG LAGPV  AA++LDP  IP G+NDSK ++ K+RE
Sbjct: 3   PDYRFEDEAIAQGFGVVAGVDEVGRGPLAGPVTAAAVVLDPARIPAGLNDSKALTPKRRE 62

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L+++I + A +SI+ AS + ID+ NI +A+  A+  AV  L V    AL+DG  +P DL
Sbjct: 63  ALFDEIAAVAHVSIAHASVEEIDEINILRASHLAMERAVAGLPVAAGFALVDGNLLPRDL 122

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              A AVIKGD++SLSI+AASI+AK+ RDR+M    + YP YG++++ GYP+  H++ ++
Sbjct: 123 RIPARAVIKGDALSLSISAASIMAKICRDRIMWDLAQHYPGYGWETNAGYPSKSHKEALR 182

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G +  HR +F+P+ N+
Sbjct: 183 NLGVTPHHRRSFKPVHNI 200


>gi|119384834|ref|YP_915890.1| ribonuclease H [Paracoccus denitrificans PD1222]
 gi|189043634|sp|A1B3V0|RNH2_PARDP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|119374601|gb|ABL70194.1| RNase HII [Paracoccus denitrificans PD1222]
          Length = 210

 Score =  276 bits (706), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 84/198 (42%), Positives = 123/198 (62%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P + LE          VAG+DEVGRG LAGPV  AA+ILD   IP G+NDSKK++ K+RE
Sbjct: 4   PDYSLEEAALRSGARFVAGVDEVGRGPLAGPVTAAAVILDAGCIPEGLNDSKKLTAKRRE 63

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L E + +    ++  AS + ID+ NI +A+  A+  A+  L+  P   L+DG  +P DL
Sbjct: 64  ALAELVMARCDWAVGHASVEEIDRLNILRASHLAMCRAIAGLRQRPCLVLVDGNMLPRDL 123

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                AV+ GD+  LSIAAASI+AK+ RDR+M    +++P YG++++ GYPT  H+Q + 
Sbjct: 124 DLPGQAVVGGDARCLSIAAASILAKLLRDRIMVDLAQQHPGYGWEANAGYPTPAHRQALL 183

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + G +  HR +F P+  +
Sbjct: 184 DLGVTPYHRRSFAPVHKI 201


>gi|295706298|ref|YP_003599373.1| ribonuclease HII [Bacillus megaterium DSM 319]
 gi|294803957|gb|ADF41023.1| ribonuclease HII [Bacillus megaterium DSM 319]
          Length = 255

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 90/195 (46%), Positives = 126/195 (64%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  +  +    +AG+DEVGRG LAGPVV AA+IL P+    G+ DSKK+S  KREE Y
Sbjct: 60  AYENELYNQGATYIAGVDEVGRGPLAGPVVAAAVILPPDFFLPGLTDSKKLSEAKREEFY 119

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E+I  SA+ I I     + ID  NI++AT  A+  A+E L V P   LID   +P  +P 
Sbjct: 120 EEICKSAVAIGIGIIDAEVIDSINIYEATKKAMTEAIELLAVQPDELLIDAMKLP--VPI 177

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAA+S+IAKVTRDR+M+   ++YP YGF+ H+GY T +H + I++ 
Sbjct: 178 SQQSIIKGDATSISIAASSVIAKVTRDRMMKELGERYPAYGFEKHMGYGTKQHLEAIQQY 237

Query: 192 GPSCIHRLTFRPLRN 206
           G    HR +F P++N
Sbjct: 238 GILPEHRRSFAPIKN 252


>gi|254485800|ref|ZP_05099005.1| ribonuclease HII [Roseobacter sp. GAI101]
 gi|214042669|gb|EEB83307.1| ribonuclease HII [Roseobacter sp. GAI101]
          Length = 205

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 84/198 (42%), Positives = 130/198 (65%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P FE E     +    VAG+DEVGRG LAGPV  AA++LDP  IP G+NDSKK++ + RE
Sbjct: 3   PDFEFERDAYARGFARVAGVDEVGRGPLAGPVTAAAVVLDPARIPEGLNDSKKLTKRARE 62

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            LY++I + A +SI+ AS + I++ NI +A+  A+  A++ L+     ALIDG  +P DL
Sbjct: 63  RLYDEIMAVADVSIAHASVEEIEELNILRASHLAMVRALDGLRTPADFALIDGNMVPRDL 122

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             ++  VIKGD+ S SI+AASI+AK+ RD +M    +++P YG+++++GY +  H + ++
Sbjct: 123 AIKSQTVIKGDARSQSISAASIMAKICRDCVMLSLAQQHPGYGWETNMGYGSKSHIEALQ 182

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G +  HR  F+P+  +
Sbjct: 183 NLGVTPHHRRLFKPVHKM 200


>gi|163745410|ref|ZP_02152770.1| ribonuclease HII [Oceanibulbus indolifex HEL-45]
 gi|161382228|gb|EDQ06637.1| ribonuclease HII [Oceanibulbus indolifex HEL-45]
          Length = 218

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/201 (41%), Positives = 127/201 (63%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           P  P FE E     +    +AG+DEVGRG LAGPV  AA++     IP G+NDSKK++ +
Sbjct: 9   PMIPDFEFERGAITRGFRTIAGVDEVGRGPLAGPVTAAAVVFTEGQIPEGLNDSKKLTAR 68

Query: 67  KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
            RE LY++I S A++ ++ A+ + I++HNI +A+  A+  A+  L      ALIDG  +P
Sbjct: 69  ARERLYDEIMSMAVVCVAHATVEEIEEHNILRASHLAMTRALAGLACAADYALIDGNMLP 128

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            DL   A  V+KGD+  LSI+AASI+AK  RDRLM    +++P YG+++++GY +  H  
Sbjct: 129 RDLSLPAQPVVKGDARCLSISAASIVAKTVRDRLMVDLAQQHPGYGWETNMGYGSKSHMA 188

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            +++ G +  HR  F+P+ N+
Sbjct: 189 ALRDLGVTPHHRRLFKPIHNI 209


>gi|260432295|ref|ZP_05786266.1| ribonuclease HII [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416123|gb|EEX09382.1| ribonuclease HII [Silicibacter lacuscaerulensis ITI-1157]
          Length = 229

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 87/198 (43%), Positives = 130/198 (65%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F LE  +  +    VAG+DEVGRG LAGPVV AA+IL+P +IP G+NDSKK++ ++R 
Sbjct: 23  PDFNLEREMMAQGHARVAGVDEVGRGPLAGPVVAAAVILNPQDIPKGLNDSKKLTARRRL 82

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L   + + +  SI+ AS   ID  NI  A+  A+  AV  L+  P   LIDG  IP+ L
Sbjct: 83  ALDADLRARSEFSIAEASVAEIDDLNILYASHLAMVRAVAALKPAPDYVLIDGNLIPKGL 142

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              A AV++GD+ S+SIAAASI+AK  RD+LM    +++P YG++++ GYP+ +H++ ++
Sbjct: 143 TVPARAVVRGDAKSVSIAAASILAKNWRDQLMVDLAQQHPGYGWETNAGYPSKQHREALQ 202

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G +  HR +F+P+ N+
Sbjct: 203 NLGVTPHHRRSFKPVHNI 220


>gi|332076292|gb|EGI86758.1| ribonuclease HII [Streptococcus pneumoniae GA41301]
          Length = 259

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 88/199 (44%), Positives = 126/199 (63%), Gaps = 3/199 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ +  +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK  E+
Sbjct: 58  LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DLP
Sbjct: 118 FQVVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAKH + + +
Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            G + IHR +F P+++L +
Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254


>gi|301794258|emb|CBW36679.1| ribonuclease HII [Streptococcus pneumoniae INV104]
 gi|332203012|gb|EGJ17080.1| ribonuclease HII [Streptococcus pneumoniae GA47901]
          Length = 259

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 88/199 (44%), Positives = 126/199 (63%), Gaps = 3/199 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ +  +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK  E+
Sbjct: 58  LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DLP
Sbjct: 118 FQVVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAKH + + +
Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            G + IHR +F P+++L +
Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254


>gi|149013109|ref|ZP_01833955.1| ribonuclease HII [Streptococcus pneumoniae SP19-BS75]
 gi|147763054|gb|EDK69997.1| ribonuclease HII [Streptococcus pneumoniae SP19-BS75]
          Length = 259

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 88/199 (44%), Positives = 126/199 (63%), Gaps = 3/199 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ +  +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK  E+
Sbjct: 58  LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DLP
Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAKH + + +
Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            G + IHR +F P+++L +
Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254


>gi|326693008|ref|ZP_08230013.1| ribonuclease HII [Leuconostoc argentinum KCTC 3773]
          Length = 258

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 87/200 (43%), Positives = 121/200 (60%), Gaps = 3/200 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F  EA    + +  VAG+DEVGRG LAGPVV AA+IL  +     + DSK++S K R
Sbjct: 56  KTRFTFEAQQWAQGLSHVAGVDEVGRGPLAGPVVAAAVILPHDFAELDVIDSKQLSEKMR 115

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E+L+++I + A+ I I       ID  NI++A   A+  AV  L   P   LID  ++  
Sbjct: 116 EQLFDRIIAQALSIGIGVVDATVIDDINIYEAARLAMTQAVAELAPEPDYLLIDAMTLQT 175

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           D+P    ++IKGD+ S SIAAASIIAKVTRDR+M    ++YP YGF  H GY T  H   
Sbjct: 176 DIP--QLSLIKGDARSNSIAAASIIAKVTRDRMMADYDRQYPGYGFAQHAGYGTKAHLAA 233

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           + E G + IHR +F P++++
Sbjct: 234 LAELGVTPIHRRSFAPVKSV 253


>gi|168486442|ref|ZP_02710950.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC1087-00]
 gi|168577174|ref|ZP_02722989.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae MLV-016]
 gi|182684110|ref|YP_001835857.1| ribonuclease HII [Streptococcus pneumoniae CGSP14]
 gi|194396938|ref|YP_002037768.1| ribonuclease HII [Streptococcus pneumoniae G54]
 gi|237650103|ref|ZP_04524355.1| ribonuclease HII [Streptococcus pneumoniae CCRI 1974]
 gi|237822305|ref|ZP_04598150.1| ribonuclease HII [Streptococcus pneumoniae CCRI 1974M2]
 gi|303255770|ref|ZP_07341812.1| ribonuclease HII [Streptococcus pneumoniae BS455]
 gi|303260563|ref|ZP_07346529.1| ribonuclease HII [Streptococcus pneumoniae SP-BS293]
 gi|303262697|ref|ZP_07348636.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS292]
 gi|303265232|ref|ZP_07351143.1| ribonuclease HII [Streptococcus pneumoniae BS397]
 gi|303266995|ref|ZP_07352869.1| ribonuclease HII [Streptococcus pneumoniae BS457]
 gi|303269263|ref|ZP_07355038.1| ribonuclease HII [Streptococcus pneumoniae BS458]
 gi|238690822|sp|B5E4Q2|RNH2_STRP4 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238691160|sp|B2IPW8|RNH2_STRPS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|182629444|gb|ACB90392.1| ribonuclease HII [Streptococcus pneumoniae CGSP14]
 gi|183570488|gb|EDT91016.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC1087-00]
 gi|183577232|gb|EDT97760.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae MLV-016]
 gi|194356605|gb|ACF55053.1| ribonuclease HII [Streptococcus pneumoniae G54]
 gi|301801974|emb|CBW34702.1| ribonuclease HII [Streptococcus pneumoniae INV200]
 gi|302597282|gb|EFL64386.1| ribonuclease HII [Streptococcus pneumoniae BS455]
 gi|302636129|gb|EFL66625.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS292]
 gi|302638276|gb|EFL68745.1| ribonuclease HII [Streptococcus pneumoniae SP-BS293]
 gi|302641220|gb|EFL71592.1| ribonuclease HII [Streptococcus pneumoniae BS458]
 gi|302643475|gb|EFL73748.1| ribonuclease HII [Streptococcus pneumoniae BS457]
 gi|302645203|gb|EFL75439.1| ribonuclease HII [Streptococcus pneumoniae BS397]
 gi|332200480|gb|EGJ14552.1| ribonuclease HII [Streptococcus pneumoniae GA41317]
          Length = 259

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 88/199 (44%), Positives = 126/199 (63%), Gaps = 3/199 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ +  +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK  E+
Sbjct: 58  LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DLP
Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAKH + + +
Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            G + IHR +F P+++L +
Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254


>gi|149006184|ref|ZP_01829896.1| ribonuclease HII [Streptococcus pneumoniae SP18-BS74]
 gi|225861097|ref|YP_002742606.1| ribonuclease HII [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230996|ref|ZP_06964677.1| ribonuclease HII [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255436|ref|ZP_06979022.1| ribonuclease HII [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298502841|ref|YP_003724781.1| ribonuclease H [Streptococcus pneumoniae TCH8431/19A]
 gi|307127247|ref|YP_003879278.1| ribonuclease HII [Streptococcus pneumoniae 670-6B]
 gi|254807994|sp|C1CRN4|RNH2_STRZT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|147761961|gb|EDK68923.1| ribonuclease HII [Streptococcus pneumoniae SP18-BS74]
 gi|225727970|gb|ACO23821.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238436|gb|ADI69567.1| ribonuclease H [Streptococcus pneumoniae TCH8431/19A]
 gi|306484309|gb|ADM91178.1| ribonuclease HII [Streptococcus pneumoniae 670-6B]
 gi|327389302|gb|EGE87647.1| ribonuclease HII [Streptococcus pneumoniae GA04375]
          Length = 259

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 88/199 (44%), Positives = 126/199 (63%), Gaps = 3/199 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ +  +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK  E+
Sbjct: 58  LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DLP
Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAKH + + +
Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            G + IHR +F P+++L +
Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254


>gi|332075090|gb|EGI85561.1| ribonuclease HII [Streptococcus pneumoniae GA17545]
          Length = 260

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 88/199 (44%), Positives = 126/199 (63%), Gaps = 3/199 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ +  +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK  E+
Sbjct: 58  LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DLP
Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAKH + + +
Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            G + IHR +F P+++L +
Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254


>gi|293570274|ref|ZP_06681343.1| ribonuclease HII [Enterococcus faecium E980]
 gi|291609681|gb|EFF38942.1| ribonuclease HII [Enterococcus faecium E980]
          Length = 255

 Score =  275 bits (704), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 93/196 (47%), Positives = 125/196 (63%), Gaps = 3/196 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F  E     +    +AGIDEVGRG LAGPVV AA+IL  N I  G+NDSK++S KKRE L
Sbjct: 59  FCFEKQGYAQGHQWIAGIDEVGRGPLAGPVVAAAVILPKNEIILGLNDSKQLSEKKRELL 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            ++I   A+ I I     Q ID+ NI++A+  A+  AVENL + P   LID  ++  DLP
Sbjct: 119 SQQIQEKALAIGIGIIDQQAIDEVNIYEASKLAMIQAVENLSIAPSYLLIDAMTL--DLP 176

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            Q   +IKGD+ S+SIAAASIIAKV RD+LM+     YP YGF  + GY T +H + ++ 
Sbjct: 177 IQQEKIIKGDARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGYGTKEHLEGLER 236

Query: 191 KGPSCIHRLTFRPLRN 206
           +G + IHR +F P++ 
Sbjct: 237 QGITPIHRKSFAPVKK 252


>gi|126734213|ref|ZP_01749960.1| ribonuclease HII [Roseobacter sp. CCS2]
 gi|126717079|gb|EBA13943.1| ribonuclease HII [Roseobacter sp. CCS2]
          Length = 207

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 96/199 (48%), Positives = 138/199 (69%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +P F  E+   ++    VAG+DEVGRG LAGPVV AA+IL+P NIP G+NDSKK++ K+R
Sbjct: 3   KPDFSFESAAHQRGFIHVAGVDEVGRGPLAGPVVAAAVILNPANIPDGLNDSKKLTAKRR 62

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           + LY+++ + A +SI+ A+   ID+HNI +A+  A+  AV  L VI   ALIDG  IP D
Sbjct: 63  DALYDELLAVADVSIAEATVAEIDEHNILRASHIAMVRAVAGLSVIAAHALIDGNMIPRD 122

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L   +  +IKGD  SLSIAAASI+AKV RDR M    +++P YG++ + GYPTA+H+  +
Sbjct: 123 LAISSQTIIKGDGRSLSIAAASIMAKVWRDRHMVALAQQHPHYGWEKNAGYPTAQHKLGL 182

Query: 189 KEKGPSCIHRLTFRPLRNL 207
           ++ G +  HR +F+P+ N+
Sbjct: 183 QQFGVTEHHRRSFKPIHNI 201


>gi|257898823|ref|ZP_05678476.1| ribonuclease HII [Enterococcus faecium Com15]
 gi|257836735|gb|EEV61809.1| ribonuclease HII [Enterococcus faecium Com15]
          Length = 255

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 93/196 (47%), Positives = 125/196 (63%), Gaps = 3/196 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F  E     +    +AGIDEVGRG LAGPVV AA+IL  N I  G+NDSK++S KKRE L
Sbjct: 59  FCFEKQGYAQGHQWIAGIDEVGRGPLAGPVVAAAVILPKNEIILGLNDSKQLSEKKRELL 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            ++I   A+ I I     Q ID+ NI++A+  A+  AVENL + P   LID  ++  DLP
Sbjct: 119 SQQIQEKALAIGIGIIDQQAIDEVNIYEASKLAMIQAVENLSIAPSYLLIDAMTL--DLP 176

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            Q   +IKGD+ S+SIAAASIIAKV RD+LM+     YP YGF  + GY T +H + ++ 
Sbjct: 177 IQQEKIIKGDARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGYGTKEHLEGLER 236

Query: 191 KGPSCIHRLTFRPLRN 206
           +G + IHR +F P++ 
Sbjct: 237 QGITPIHRKSFAPVKK 252


>gi|86136899|ref|ZP_01055477.1| ribonuclease HII [Roseobacter sp. MED193]
 gi|85826223|gb|EAQ46420.1| ribonuclease HII [Roseobacter sp. MED193]
          Length = 226

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 93/204 (45%), Positives = 130/204 (63%)

Query: 4   NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           +   E+P   LE    EK    VAG+DEVGRG LAGPV  AA++LD  ++P G+NDSKK+
Sbjct: 19  DKTMEQPDNSLEIAAHEKGYLRVAGVDEVGRGPLAGPVTAAAVVLDMADLPEGLNDSKKL 78

Query: 64  SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
           S KKR  L ++I + A +SI+ AS + ID  NI +A+  A+  AV  L   P   LIDG 
Sbjct: 79  SAKKRVVLAKEIFARAQVSIAEASVEEIDSINILRASHLAMERAVAALDPPPDYLLIDGN 138

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            IP DL   A AV+KGD  S+SIAAASI+AK  RD LM    +++P YG++ + GYP+ +
Sbjct: 139 LIPRDLTIDAQAVVKGDGKSVSIAAASIVAKEARDNLMVDLAQQFPRYGWEKNAGYPSKQ 198

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H++ + E G +  HR +F+P+  +
Sbjct: 199 HREALVELGVTPHHRRSFKPVHKI 222


>gi|163761011|ref|ZP_02168089.1| putative ribonuclease HII [Hoeflea phototrophica DFL-43]
 gi|162281792|gb|EDQ32085.1| putative ribonuclease HII [Hoeflea phototrophica DFL-43]
          Length = 221

 Score =  275 bits (703), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 109/204 (53%), Positives = 138/204 (67%)

Query: 2   FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61
                P  P    E    +  + PVAG+DE GRG LAGPVV AA+ILDP  IP G+NDSK
Sbjct: 16  LFPDYPASPDDRFERHFSKDGLLPVAGLDEAGRGPLAGPVVAAAVILDPARIPEGLNDSK 75

Query: 62  KISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
            +S KKRE L+++I ++A++SI+SAS + ID  +I KA+L A+  A+  L V    ALID
Sbjct: 76  ALSRKKRETLFDQIIATAMVSIASASPREIDVTDIRKASLTAMRRALIALPVRAGYALID 135

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           GR IP  L C   A++KGD+ SLSIAAASI+AKV RDR+M  A   YP YGFDSH GY +
Sbjct: 136 GRDIPPGLTCPGRALVKGDARSLSIAAASIVAKVMRDRMMMRAAILYPVYGFDSHKGYGS 195

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLR 205
           AKH   I+E GP  +HR++FRPLR
Sbjct: 196 AKHLAAIREHGPCPLHRMSFRPLR 219


>gi|163739877|ref|ZP_02147284.1| Ribonuclease H [Phaeobacter gallaeciensis BS107]
 gi|161386911|gb|EDQ11273.1| Ribonuclease H [Phaeobacter gallaeciensis BS107]
          Length = 205

 Score =  275 bits (703), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 91/198 (45%), Positives = 128/198 (64%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P + LEA    +    +AG+DEVGRG LAGPV  AA+ILDP NIP G+NDSKK+S K+RE
Sbjct: 4   PDYTLEAAAHGRGQIRIAGVDEVGRGPLAGPVTAAAVILDPENIPEGLNDSKKLSAKRRE 63

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            +   I + A +SI+ AS + ID  NI +A+  A+  AV  L   P   LIDG  IP+ L
Sbjct: 64  AVEASIFAQAEVSIAHASVEEIDSLNILRASHLAMERAVAALDPAPDYLLIDGNLIPKGL 123

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              A  VIKGD+ S+SIAAASI+AK  RDR+M    +++P YG++ + GYP+ +H++ + 
Sbjct: 124 LQPAEFVIKGDAKSVSIAAASIVAKQARDRIMVDLAQQFPGYGWEKNAGYPSKQHREALV 183

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G +  HR +F+P+  +
Sbjct: 184 SLGVTPHHRRSFKPVHKM 201


>gi|169833197|ref|YP_001694596.1| ribonuclease HII [Streptococcus pneumoniae Hungary19A-6]
 gi|238688296|sp|B1IBW1|RNH2_STRPI RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|168995699|gb|ACA36311.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 259

 Score =  274 bits (702), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 88/199 (44%), Positives = 126/199 (63%), Gaps = 3/199 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ +  +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK  E+
Sbjct: 58  LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DLP
Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAKH + + +
Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            G + IHR +F P+++L +
Sbjct: 236 LGATPIHRTSFEPVKSLVL 254


>gi|254472008|ref|ZP_05085409.1| ribonuclease HII [Pseudovibrio sp. JE062]
 gi|211959210|gb|EEA94409.1| ribonuclease HII [Pseudovibrio sp. JE062]
          Length = 217

 Score =  274 bits (702), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 94/207 (45%), Positives = 130/207 (62%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           +F  + P+ P    E  V +      AGIDE GRG  AGPVVVAA  L+ +N+P G+NDS
Sbjct: 8   LFDIAFPDAPDLRFERSVEQDLQGRFAGIDEAGRGPWAGPVVVAAASLNYDNLPEGLNDS 67

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           KK++  KREEL+E+I   A +S+   S Q ID+ NI +ATL  +     +L V  +   I
Sbjct: 68  KKLTEAKREELFEQILEVADVSVCVQSAQTIDRLNIREATLQGMRTCARSLSVPVKRFFI 127

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG+ +P  LP +  A+IKGD   L+I+AASI+AKVTRDRLM    + +P+YGF  H GY 
Sbjct: 128 DGKDVPHHLPQEGQAMIKGDGRCLAISAASIVAKVTRDRLMVKMDRYFPEYGFAKHKGYG 187

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           T +HQ+ +   G + +HR +FRP+R L
Sbjct: 188 TKQHQEALAAHGVTPLHRCSFRPIREL 214


>gi|227551191|ref|ZP_03981240.1| ribonuclease H [Enterococcus faecium TX1330]
 gi|257887692|ref|ZP_05667345.1| ribonuclease HII [Enterococcus faecium 1,141,733]
 gi|257896186|ref|ZP_05675839.1| ribonuclease HII [Enterococcus faecium Com12]
 gi|293377187|ref|ZP_06623395.1| ribonuclease HII [Enterococcus faecium PC4.1]
 gi|227179659|gb|EEI60631.1| ribonuclease H [Enterococcus faecium TX1330]
 gi|257823746|gb|EEV50678.1| ribonuclease HII [Enterococcus faecium 1,141,733]
 gi|257832751|gb|EEV59172.1| ribonuclease HII [Enterococcus faecium Com12]
 gi|292644207|gb|EFF62309.1| ribonuclease HII [Enterococcus faecium PC4.1]
          Length = 255

 Score =  274 bits (702), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 92/196 (46%), Positives = 124/196 (63%), Gaps = 3/196 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F  E     +    +AGIDEVGRG LAGPVV AA+IL  N I  G+NDSK++S KKRE L
Sbjct: 59  FCFEKQGYAQGHQWIAGIDEVGRGPLAGPVVAAAVILPKNEIILGLNDSKQLSEKKRELL 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            ++I   A+ I I     Q ID+ NI++A+  A+  AVENL + P   LID  ++  DL 
Sbjct: 119 SQQIQEKALAIGIGIIDQQTIDEVNIYEASKLAMIQAVENLSIAPSYLLIDAMTL--DLS 176

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            Q   +IKGD+ S+SIAAASIIAKV RD+LM+     YP YGF  + GY T +H + ++ 
Sbjct: 177 IQQEKIIKGDARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGYGTKEHLEGLER 236

Query: 191 KGPSCIHRLTFRPLRN 206
           +G + IHR +F P++ 
Sbjct: 237 QGITPIHRKSFAPVKK 252


>gi|257878020|ref|ZP_05657673.1| ribonuclease HII [Enterococcus faecium 1,230,933]
 gi|257881194|ref|ZP_05660847.1| ribonuclease HII [Enterococcus faecium 1,231,502]
 gi|257889781|ref|ZP_05669434.1| ribonuclease HII [Enterococcus faecium 1,231,410]
 gi|257892282|ref|ZP_05671935.1| ribonuclease HII [Enterococcus faecium 1,231,408]
 gi|258616491|ref|ZP_05714261.1| ribonuclease HII [Enterococcus faecium DO]
 gi|260559070|ref|ZP_05831256.1| ribonuclease HII [Enterococcus faecium C68]
 gi|261207604|ref|ZP_05922289.1| ribonuclease HII [Enterococcus faecium TC 6]
 gi|289565116|ref|ZP_06445569.1| ribonuclease HII [Enterococcus faecium D344SRF]
 gi|293556764|ref|ZP_06675327.1| ribonuclease HII [Enterococcus faecium E1039]
 gi|293563422|ref|ZP_06677871.1| ribonuclease HII [Enterococcus faecium E1162]
 gi|293568165|ref|ZP_06679501.1| ribonuclease HII (RNase HII) [Enterococcus faecium E1071]
 gi|294614822|ref|ZP_06694717.1| ribonuclease HII [Enterococcus faecium E1636]
 gi|294617501|ref|ZP_06697132.1| ribonuclease HII [Enterococcus faecium E1679]
 gi|294622303|ref|ZP_06701346.1| ribonuclease HII [Enterococcus faecium U0317]
 gi|314938032|ref|ZP_07845342.1| ribonuclease HII [Enterococcus faecium TX0133a04]
 gi|314941982|ref|ZP_07848843.1| ribonuclease HII [Enterococcus faecium TX0133C]
 gi|314948765|ref|ZP_07852137.1| ribonuclease HII [Enterococcus faecium TX0082]
 gi|314951783|ref|ZP_07854822.1| ribonuclease HII [Enterococcus faecium TX0133A]
 gi|314991810|ref|ZP_07857268.1| ribonuclease HII [Enterococcus faecium TX0133B]
 gi|314995851|ref|ZP_07860938.1| ribonuclease HII [Enterococcus faecium TX0133a01]
 gi|257812248|gb|EEV41006.1| ribonuclease HII [Enterococcus faecium 1,230,933]
 gi|257816852|gb|EEV44180.1| ribonuclease HII [Enterococcus faecium 1,231,502]
 gi|257826141|gb|EEV52767.1| ribonuclease HII [Enterococcus faecium 1,231,410]
 gi|257828661|gb|EEV55268.1| ribonuclease HII [Enterococcus faecium 1,231,408]
 gi|260074827|gb|EEW63143.1| ribonuclease HII [Enterococcus faecium C68]
 gi|260077987|gb|EEW65693.1| ribonuclease HII [Enterococcus faecium TC 6]
 gi|289163123|gb|EFD10970.1| ribonuclease HII [Enterococcus faecium D344SRF]
 gi|291589155|gb|EFF20967.1| ribonuclease HII (RNase HII) [Enterococcus faecium E1071]
 gi|291592284|gb|EFF23898.1| ribonuclease HII [Enterococcus faecium E1636]
 gi|291596241|gb|EFF27503.1| ribonuclease HII [Enterococcus faecium E1679]
 gi|291598195|gb|EFF29293.1| ribonuclease HII [Enterococcus faecium U0317]
 gi|291601096|gb|EFF31385.1| ribonuclease HII [Enterococcus faecium E1039]
 gi|291604683|gb|EFF34168.1| ribonuclease HII [Enterococcus faecium E1162]
 gi|313589955|gb|EFR68800.1| ribonuclease HII [Enterococcus faecium TX0133a01]
 gi|313593621|gb|EFR72466.1| ribonuclease HII [Enterococcus faecium TX0133B]
 gi|313596062|gb|EFR74907.1| ribonuclease HII [Enterococcus faecium TX0133A]
 gi|313599234|gb|EFR78079.1| ribonuclease HII [Enterococcus faecium TX0133C]
 gi|313642607|gb|EFS07187.1| ribonuclease HII [Enterococcus faecium TX0133a04]
 gi|313644831|gb|EFS09411.1| ribonuclease HII [Enterococcus faecium TX0082]
          Length = 255

 Score =  274 bits (702), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 92/196 (46%), Positives = 125/196 (63%), Gaps = 3/196 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F  E     +    +AGIDEVGRG LAGPVV AA+IL  N I  G+NDSK++S KKRE L
Sbjct: 59  FCFEKQGYAQGHQWIAGIDEVGRGPLAGPVVAAAVILPKNEIILGLNDSKQLSEKKRELL 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+++   A+ I I     Q ID  NI++A+  A+  AVE L ++P   LID  ++  DLP
Sbjct: 119 YQQVQEKALAIGIGIVDQQTIDDVNIYEASKLAMIQAVEKLSIVPSYLLIDAMTL--DLP 176

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            Q   +IKGD+ S+SIAAASIIAKV RD+LM+     YP YGF  + GY T +H + ++ 
Sbjct: 177 IQQEKIIKGDARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGYGTKEHLEGLER 236

Query: 191 KGPSCIHRLTFRPLRN 206
           +G + IHR +F P++ 
Sbjct: 237 QGITPIHRKSFAPVKK 252


>gi|189485020|ref|YP_001955961.1| ribonuclease HII [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|254808005|sp|B1GZ18|RNH2_UNCTG RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|170286979|dbj|BAG13500.1| ribonuclease HII [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 210

 Score =  274 bits (702), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 85/197 (43%), Positives = 120/197 (60%), Gaps = 1/197 (0%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F  +     K  +PVAGIDE GRG LAGPVV A +IL  ++    +NDSK++S KKRE L
Sbjct: 6   FSFDRNFYNKGFYPVAGIDEAGRGPLAGPVVAAVVILPKDSAIPYLNDSKQLSEKKREIL 65

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +E I  +A+  ++   +++ ID+ NI +AT  A+  AV  L+  P   LIDG      L 
Sbjct: 66  FEIIKETALDYAVELVNNEIIDEINILQATFLAMSRAVLKLKTQPDLYLIDGNRKVHGLS 125

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                ++ GD+ S  IAAASI+AKV+RD++M    K+YP Y F+ H GY T KH + +K+
Sbjct: 126 FNQETIVGGDAKSACIAAASILAKVSRDKMMLEYAKQYPVYEFEKHKGYGTKKHIEALKK 185

Query: 191 KGPSCIHRLTFRPLRNL 207
            G   IHRLTF P+ ++
Sbjct: 186 HGICPIHRLTFSPVNDI 202


>gi|168492508|ref|ZP_02716651.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC0288-04]
 gi|168493082|ref|ZP_02717225.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC3059-06]
 gi|221231870|ref|YP_002511022.1| ribonuclease HII [Streptococcus pneumoniae ATCC 700669]
 gi|225854632|ref|YP_002736144.1| ribonuclease HII [Streptococcus pneumoniae JJA]
 gi|254807990|sp|B8ZQ37|RNH2_STRPJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807992|sp|C1CEC3|RNH2_STRZJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|183573321|gb|EDT93849.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC0288-04]
 gi|183576643|gb|EDT97171.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC3059-06]
 gi|220674330|emb|CAR68876.1| ribonuclease HII [Streptococcus pneumoniae ATCC 700669]
 gi|225722957|gb|ACO18810.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae JJA]
          Length = 259

 Score =  274 bits (702), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 87/199 (43%), Positives = 125/199 (62%), Gaps = 3/199 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ +  + GIDEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK  E+
Sbjct: 58  LSYEKELYKQGLTLIVGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DLP
Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAKH + + +
Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            G + IHR +F P+++L +
Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254


>gi|15903088|ref|NP_358638.1| ribonuclease HII [Streptococcus pneumoniae R6]
 gi|116515974|ref|YP_816494.1| ribonuclease HII [Streptococcus pneumoniae D39]
 gi|148985764|ref|ZP_01818892.1| ribonuclease HII [Streptococcus pneumoniae SP3-BS71]
 gi|32171635|sp|Q8DPR3|RNH2_STRR6 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|122278620|sp|Q04KF4|RNH2_STRP2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|15458664|gb|AAK99848.1| Ribonuclease H [Streptococcus pneumoniae R6]
 gi|116076550|gb|ABJ54270.1| ribonuclease HII [Streptococcus pneumoniae D39]
 gi|147922068|gb|EDK73191.1| ribonuclease HII [Streptococcus pneumoniae SP3-BS71]
 gi|301800096|emb|CBW32697.1| ribonuclease HII [Streptococcus pneumoniae OXC141]
          Length = 259

 Score =  274 bits (702), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 87/199 (43%), Positives = 125/199 (62%), Gaps = 3/199 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ +  + GIDEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK  E+
Sbjct: 58  LSYEKELYKQGLTLIVGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DLP
Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAKH + + +
Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            G + IHR +F P+++L +
Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254


>gi|85705987|ref|ZP_01037083.1| ribonuclease HII [Roseovarius sp. 217]
 gi|85669575|gb|EAQ24440.1| ribonuclease HII [Roseovarius sp. 217]
          Length = 206

 Score =  274 bits (702), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 89/198 (44%), Positives = 129/198 (65%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E     +    +AG+DEVGRG LAGPV  AA+ILDP NIP G+NDSKK+S  +R 
Sbjct: 4   PDFSHEHTAHSQGYRRIAGVDEVGRGPLAGPVTAAAVILDPGNIPEGLNDSKKLSAARRA 63

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L   I ++A +S++ AS   ID+ NI +A+  A+  A+  L + P  ALIDG  IP  L
Sbjct: 64  ALCGVILATAHVSVAHASVDEIDRLNILRASHLAMERAIAGLGLAPDLALIDGNLIPRGL 123

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              A A+++GD+ISLSIAAASI+AK+ RD++M    +++P YG++ + GYP+  H+Q + 
Sbjct: 124 TLPARAIVRGDAISLSIAAASIVAKIRRDQIMWDLAQQFPGYGWERNAGYPSKSHKQALL 183

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G +  HR +F+P+ N+
Sbjct: 184 NLGVTPHHRRSFKPVHNI 201


>gi|159184435|ref|NP_353745.2| ribonuclease HII [Agrobacterium tumefaciens str. C58]
 gi|39932435|sp|Q8UHG2|RNH2_AGRT5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|159139748|gb|AAK86530.2| ribonuclease HII [Agrobacterium tumefaciens str. C58]
          Length = 217

 Score =  274 bits (702), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 105/197 (53%), Positives = 138/197 (70%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E   ++K  WPVAG DE GRG LAGPVV AA+ILDP+NIP G++DSKK++ +KRE
Sbjct: 20  PDFAFELEAKKKGFWPVAGTDEAGRGPLAGPVVAAAVILDPDNIPKGMDDSKKLTRQKRE 79

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L+ +I  ++I+S++S+    ID  NI +A+LDA+  AV  L++ P   L DGR  P  +
Sbjct: 80  SLFVQIMETSIVSVASSGPGLIDSVNILRASLDAMRRAVLGLEIPPALVLADGRDRPPGI 139

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           PC+A AVIKGDS SLSIAAASIIAKVTRDR+M  A   +  YGF+ H GY T  H + I+
Sbjct: 140 PCEAKAVIKGDSRSLSIAAASIIAKVTRDRMMERAGVVHTSYGFEGHAGYGTPAHLRAIE 199

Query: 190 EKGPSCIHRLTFRPLRN 206
             GP  +HR++FRPL+ 
Sbjct: 200 SHGPCALHRMSFRPLKR 216


>gi|289167905|ref|YP_003446174.1| ribonuclease HII [Streptococcus mitis B6]
 gi|288907472|emb|CBJ22309.1| ribonuclease HII [Streptococcus mitis B6]
          Length = 259

 Score =  274 bits (701), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 88/197 (44%), Positives = 127/197 (64%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ +  VAG+DEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK  E+
Sbjct: 58  LSYEKELYKQGLTLVAGVDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ + + A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DLP
Sbjct: 118 FQAVQNQALSIGIGIMDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAKH + +++
Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEFDQQFPGYDFATNAGYGTAKHLEGLEK 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR +F P+++L
Sbjct: 236 LGVTPIHRTSFEPVKSL 252


>gi|257884857|ref|ZP_05664510.1| ribonuclease HII [Enterococcus faecium 1,231,501]
 gi|257820695|gb|EEV47843.1| ribonuclease HII [Enterococcus faecium 1,231,501]
          Length = 254

 Score =  274 bits (701), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 92/196 (46%), Positives = 126/196 (64%), Gaps = 3/196 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F  E     +    +AGIDEVGRG LAGPVV AA+IL  N I  G+NDSK++S KKRE L
Sbjct: 59  FCFEKQGYAQGHQWIAGIDEVGRGPLAGPVVAAAVILPKNEIILGLNDSKQLSEKKRELL 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+++   A+ I I     Q ID  NI++A+  A++ AVE L ++P   LID  ++  DLP
Sbjct: 119 YQQVQEKALAIGIGIVDQQTIDDVNIYEASKLAMFQAVEKLSIVPSYLLIDAMTL--DLP 176

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            Q   +IKGD+ S+SIAAASIIAKV RD+LM+     YP YGF  + GY T +H + ++ 
Sbjct: 177 IQQEKIIKGDARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGYGTKEHLEGLER 236

Query: 191 KGPSCIHRLTFRPLRN 206
           +G + IHR +F P++ 
Sbjct: 237 QGITPIHRKSFAPVKK 252


>gi|227821031|ref|YP_002825001.1| ribonuclease HII [Sinorhizobium fredii NGR234]
 gi|254807983|sp|C3MHC0|RNH2_RHISN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|227340030|gb|ACP24248.1| ribonuclease HII [Sinorhizobium fredii NGR234]
          Length = 231

 Score =  274 bits (701), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 103/200 (51%), Positives = 139/200 (69%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           P  P F  E   +    WPVAG DE GRG LAGPVV AA+ILDP+ +P G+NDSK ++ +
Sbjct: 16  PVLPDFSFEITAKRDGFWPVAGADEAGRGPLAGPVVAAAVILDPDAVPGGLNDSKLLTAE 75

Query: 67  KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           +RE L+ +I ++A +SI+S+S  +ID  +I KA+LDA+  A++ L +  R ALIDGR +P
Sbjct: 76  QREALFTEIMATATVSIASSSAAHIDATDILKASLDAMRRAIDGLSIAARFALIDGRDVP 135

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           + LPC A A++KGDS S+SIAAASI+AKVTRDR+M  A   +P YGF  H GY T +H+ 
Sbjct: 136 QGLPCHAKAIVKGDSRSVSIAAASIVAKVTRDRMMARADATFPAYGFALHAGYATVRHRS 195

Query: 187 VIKEKGPSCIHRLTFRPLRN 206
            I   GP  +HR++FRP R 
Sbjct: 196 AIDSHGPCSLHRMSFRPFRE 215


>gi|254476664|ref|ZP_05090050.1| ribonuclease HII [Ruegeria sp. R11]
 gi|214030907|gb|EEB71742.1| ribonuclease HII [Ruegeria sp. R11]
          Length = 205

 Score =  274 bits (701), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 94/200 (47%), Positives = 130/200 (65%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E P + LEA    +    +AG+DEVGRG LAGPV  AA+ILDP+ IP G+NDSKK+S KK
Sbjct: 2   EHPDYSLEAAAIARGHRRIAGVDEVGRGPLAGPVTAAAVILDPDAIPDGLNDSKKLSAKK 61

Query: 68  REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           RE +   I  SA +SI+ AS + ID  NI +A+  A+  AV  L   P   LIDG  IP+
Sbjct: 62  REAVEADIFQSAEVSIAHASVEEIDSLNILRASHLAMERAVAALDPPPDYLLIDGNLIPK 121

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +   A  VIKGD  S+SIAAASI+AK+ RDR+M    +++P YG+D + GYP+ +H++ 
Sbjct: 122 GVQQPAEFVIKGDGKSVSIAAASIVAKLARDRIMVDLAQQFPGYGWDKNAGYPSKQHREA 181

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           + E G +  HR +F+P+  +
Sbjct: 182 LIEIGVTPHHRRSFKPVHKI 201


>gi|163743378|ref|ZP_02150758.1| ribonuclease HII [Phaeobacter gallaeciensis 2.10]
 gi|161383372|gb|EDQ07761.1| ribonuclease HII [Phaeobacter gallaeciensis 2.10]
          Length = 205

 Score =  273 bits (700), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 90/198 (45%), Positives = 128/198 (64%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P + LEA    +    +AG+DEVGRG LAGPV  AA+ILDP NIP G+NDSKK+S K+RE
Sbjct: 4   PDYTLEAAAHGRGQIRIAGVDEVGRGPLAGPVTAAAVILDPENIPEGLNDSKKLSAKRRE 63

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            +   I + A ++I+ AS + ID  NI +A+  A+  AV  L   P   LIDG  IP+ L
Sbjct: 64  AVEASIFAQAEVAIAHASVEEIDSLNILRASHLAMERAVAALDPAPDYLLIDGNLIPKGL 123

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              A  VIKGD+ S+SIAAASI+AK  RDR+M    +++P YG++ + GYP+ +H++ + 
Sbjct: 124 LQPAEFVIKGDAKSVSIAAASIVAKQARDRIMVDLAQQFPGYGWEKNAGYPSKQHREALV 183

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G +  HR +F+P+  +
Sbjct: 184 SLGVTPHHRRSFKPVHKM 201


>gi|259907556|ref|YP_002647912.1| Ribonuclease HII [Erwinia pyrifoliae Ep1/96]
 gi|224963178|emb|CAX54662.1| Ribonuclease HII [Erwinia pyrifoliae Ep1/96]
 gi|283477396|emb|CAY73312.1| rnhB [Erwinia pyrifoliae DSM 12163]
          Length = 207

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/184 (47%), Positives = 117/184 (63%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
           W +AG+DEVGRG L G VV AA+ILDP+    G+ DSKK+S K+R  LY++I   A+  S
Sbjct: 10  WLIAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLGDSKKLSEKRRLALYDEIKDRALSWS 69

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A  + ID+ NI  AT+ A+  AV  L + P   LIDG   P+ L   + AV+KGDS+
Sbjct: 70  LGRAEPEEIDRLNILHATMLAMQRAVAGLHLTPDFVLIDGNRCPQ-LAMPSRAVVKGDSL 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRDR M    ++YP YGF  H GYPTA H + +   G +  HR +F 
Sbjct: 129 VPEISAASIMAKVTRDREMCELDQQYPQYGFARHKGYPTAVHMEKLARFGVTPQHRRSFA 188

Query: 203 PLRN 206
           P+RN
Sbjct: 189 PVRN 192


>gi|145627984|ref|ZP_01783785.1| lipid-A-disaccharide synthase [Haemophilus influenzae 22.1-21]
 gi|144979759|gb|EDJ89418.1| lipid-A-disaccharide synthase [Haemophilus influenzae 22.1-21]
          Length = 585

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 86/187 (45%), Positives = 119/187 (63%), Gaps = 1/187 (0%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +    +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L E+I   A+
Sbjct: 394 QGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKAL 453

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             ++  A    ID+ NI +A+L A+  AV++L++ P   L+DG  IP+DL   A AV+KG
Sbjct: 454 AWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKG 513

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DS+   I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR 
Sbjct: 514 DSLVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAEFGALPQHRR 573

Query: 200 TFRPLRN 206
           +F P++ 
Sbjct: 574 SFAPVKK 580


>gi|294500952|ref|YP_003564652.1| ribonuclease HII [Bacillus megaterium QM B1551]
 gi|294350889|gb|ADE71218.1| ribonuclease HII [Bacillus megaterium QM B1551]
          Length = 255

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 89/195 (45%), Positives = 125/195 (64%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  +  +    +AG+DEVGRG LAGPVV AA+IL P+    G+ DSKK+S  KRE  Y
Sbjct: 60  AYENELYSQGATYIAGVDEVGRGPLAGPVVAAAVILPPDFFLPGLTDSKKLSEAKREAFY 119

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E+I  SA+ I I     + ID  NI++AT  A+  A+E L V P   LID   +P  +P 
Sbjct: 120 EEICKSAVAIGIGIIGAEVIDSINIYEATKKAMTEAIELLAVQPDELLIDAMKLP--VPI 177

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAA+S+IAKVTRDR+M+   ++YP YGF+ H+GY T +H + I++ 
Sbjct: 178 SQQSIIKGDATSISIAASSVIAKVTRDRMMKELGERYPAYGFEKHMGYGTKQHLEAIEKY 237

Query: 192 GPSCIHRLTFRPLRN 206
           G    HR +F P++N
Sbjct: 238 GILPEHRRSFAPIKN 252


>gi|149025509|ref|ZP_01836442.1| ribonuclease HII [Streptococcus pneumoniae SP23-BS72]
 gi|147929381|gb|EDK80378.1| ribonuclease HII [Streptococcus pneumoniae SP23-BS72]
          Length = 259

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 86/199 (43%), Positives = 125/199 (62%), Gaps = 3/199 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ +  + GIDEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK  E+
Sbjct: 58  LSYEKELYKQGLTLIVGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ +   ++ I I    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DLP
Sbjct: 118 FQAVQDQSLSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAKH + + +
Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            G + IHR +F P+++L +
Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254


>gi|149912480|ref|ZP_01901014.1| Ribonuclease H [Roseobacter sp. AzwK-3b]
 gi|149812886|gb|EDM72712.1| Ribonuclease H [Roseobacter sp. AzwK-3b]
          Length = 211

 Score =  273 bits (698), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 128/202 (63%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           +   P F LE          VAG+DEVGRG LAGPV  AA++LD   IP G+NDSK+++ 
Sbjct: 1   MSTLPDFTLETAAHAAGHLRVAGVDEVGRGPLAGPVTAAAVVLDILRIPEGLNDSKRLTA 60

Query: 66  KKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           K+R  L++ I   A +SI+ AS + IDK NI +A+  A+  A+  L   P  ALIDG  I
Sbjct: 61  KRRAVLHDAILGMAEVSIAHASVEEIDKLNILRASHLAMERAIAGLATPPDMALIDGNLI 120

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  L   A AV+KGD  SLSIAAASI+AK+TRDR+M    +++P YG++++ GYP+  H 
Sbjct: 121 PRGLQIPAQAVVKGDGKSLSIAAASIVAKITRDRIMWDLAQQFPGYGWETNAGYPSKSHI 180

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
             ++  G +  HR +F+P+ N+
Sbjct: 181 AALQNIGLTPHHRRSFKPVHNI 202


>gi|77462008|ref|YP_351512.1| ribonuclease HII [Rhodobacter sphaeroides 2.4.1]
 gi|221640959|ref|YP_002527221.1| ribonuclease HII [Rhodobacter sphaeroides KD131]
 gi|332559935|ref|ZP_08414257.1| ribonuclease HII [Rhodobacter sphaeroides WS8N]
 gi|97189247|sp|Q3J6H3|RNH2_RHOS4 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807985|sp|B9KRA6|RNH2_RHOSK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|77386426|gb|ABA77611.1| ribonuclease HII [Rhodobacter sphaeroides 2.4.1]
 gi|221161740|gb|ACM02720.1| Ribonuclease HII [Rhodobacter sphaeroides KD131]
 gi|332277647|gb|EGJ22962.1| ribonuclease HII [Rhodobacter sphaeroides WS8N]
          Length = 212

 Score =  273 bits (698), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 86/198 (43%), Positives = 125/198 (63%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P +  E     +    V G+DEVGRG LAGPV  AA+ L P  IP G+NDSKK++  +RE
Sbjct: 6   PDWTHETAALAEGFTCVVGVDEVGRGPLAGPVTAAAVRLFPGRIPEGLNDSKKLTAPRRE 65

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L  +I + A +SI+ AS + ID+ NI +A+  A+  A+  L   P  ALIDG  +P+ L
Sbjct: 66  MLAAEIHTVAEVSIAHASVEEIDRLNILQASHLAMGRALAGLPSRPDFALIDGHMVPKGL 125

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             +  A++KGD++ LSIAAASI+AKV RDR+M    +++P YG+ ++ GY T  H Q + 
Sbjct: 126 GHRCRAIVKGDALCLSIAAASIVAKVARDRIMVDLEQQHPGYGWRTNAGYGTKDHLQALL 185

Query: 190 EKGPSCIHRLTFRPLRNL 207
             GP+  HR +F+P+ N+
Sbjct: 186 NLGPTPHHRRSFKPVHNI 203


>gi|322385535|ref|ZP_08059179.1| ribonuclease HII [Streptococcus cristatus ATCC 51100]
 gi|321270273|gb|EFX53189.1| ribonuclease HII [Streptococcus cristatus ATCC 51100]
          Length = 254

 Score =  273 bits (698), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/197 (44%), Positives = 122/197 (61%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  +  +    +AGIDEVGRG LAGPVV AA+IL PN    G+NDSKKI  KK EE+
Sbjct: 58  LRYEKELYSQGFQALAGIDEVGRGPLAGPVVAAAVILPPNCKIKGLNDSKKIPKKKHEEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ +   A+ + +    +Q ID+ NI++AT  A+  AV  L++ P   LID   +  DL 
Sbjct: 118 YQAVLDHALAVGLGIMDNQTIDRVNIYEATKLAMLEAVAQLKIKPDYLLIDAMKL--DLS 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD++M    + YP Y F  + GY T  H Q ++ 
Sbjct: 176 LPQQSIIKGDANSLSIAAASIVAKVTRDKMMADFDQIYPGYDFAQNAGYGTKSHLQGLER 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR TF P++++
Sbjct: 236 NGVTPIHRKTFEPVKSM 252


>gi|117923822|ref|YP_864439.1| RNase HII [Magnetococcus sp. MC-1]
 gi|189043692|sp|A0L4Z0|RNH2_MAGSM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|117607578|gb|ABK43033.1| RNase HII [Magnetococcus sp. MC-1]
          Length = 213

 Score =  273 bits (698), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 94/202 (46%), Positives = 129/202 (63%), Gaps = 4/202 (1%)

Query: 10  PHFELEAMVREKN--MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           P  ELE  +   N  +  + G+DE GRG L GPVV AA++LD +N+P G+NDSK++S KK
Sbjct: 9   PDLELECALLRSNRAIKTLCGVDEAGRGPLCGPVVAAAVVLDLDNLPVGLNDSKQLSAKK 68

Query: 68  REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ--VIPRSALIDGRSI 125
           RE+L+E+I  ++ + +  AS   ID  NI  A++ A+  AV  LQ  ++   ALIDG  +
Sbjct: 69  REQLFEQIYVTSQVGVGEASVAEIDALNILHASMLAMVRAVTALQGRLVVDHALIDGNRV 128

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  LP    AV+KGD+ SLSIAAASIIAKVTRDR+M    + YP YG+    GYPT  H 
Sbjct: 129 PATLPVPGQAVVKGDAKSLSIAAASIIAKVTRDRIMAELDRDYPHYGWAKSQGYPTQAHL 188

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
           Q +   G +  HR +F+P++ L
Sbjct: 189 QALALHGVTPHHRRSFKPVKQL 210


>gi|310817212|ref|YP_003965176.1| ribonuclease HII [Ketogulonicigenium vulgare Y25]
 gi|308755947|gb|ADO43876.1| ribonuclease HII [Ketogulonicigenium vulgare Y25]
          Length = 209

 Score =  273 bits (698), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 134/202 (66%), Gaps = 2/202 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           + +RP +  E   + +    VAG+DEVGRG LAGPV  AA+ILDP NIP G+NDSKK+S 
Sbjct: 1   MTDRPDYSFELAAQARGFARVAGVDEVGRGPLAGPVTAAAVILDPANIPEGLNDSKKLSA 60

Query: 66  KKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           K+R+ L+++I + A +SI+ A+   ID+ NI +A+  A+  A+  L       L+DG  +
Sbjct: 61  KRRDALFDQIMAVAQVSIAHATVAEIDEMNILRASHVAMCRALAGL--PADYVLVDGNLL 118

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P+DL   A A+I GD+ SLSIAAASIIAKV RDR+M    +++P YG++ + GYP+A H+
Sbjct: 119 PKDLSLPAEALISGDARSLSIAAASIIAKVVRDRIMVDLAQQFPAYGWERNAGYPSAAHR 178

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
             +   G +  HR +F+P+ N+
Sbjct: 179 AALIAHGVTPHHRRSFKPVHNI 200


>gi|149202924|ref|ZP_01879895.1| Ribonuclease H [Roseovarius sp. TM1035]
 gi|149143470|gb|EDM31506.1| Ribonuclease H [Roseovarius sp. TM1035]
          Length = 207

 Score =  273 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 87/198 (43%), Positives = 126/198 (63%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E     +    +AG+DEVGRG LAGPV  AA+ILDP NIP G+NDSKK+S  +R 
Sbjct: 4   PDFTHERAALSEGYLRIAGVDEVGRGPLAGPVTAAAVILDPGNIPEGLNDSKKLSAARRA 63

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L E I +SA  S++ AS   ID+ NI +A   A+  A+  L   P   LIDG  IP  L
Sbjct: 64  ILCEAIHASAEASVAHASVAEIDQLNILRAAHLAMERAIAALDPQPDLVLIDGNLIPRGL 123

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              A A+++GD++S+SIAAASI+AK+ RD++M    +++P YG++ + GYP+  H++ + 
Sbjct: 124 TLPARAIVRGDAVSVSIAAASIVAKIRRDQIMWDLAQQFPGYGWERNAGYPSKSHREALL 183

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G +  HR +F+P+ N+
Sbjct: 184 NLGVTPHHRRSFKPVHNI 201


>gi|322515100|ref|ZP_08068107.1| ribonuclease HII [Actinobacillus ureae ATCC 25976]
 gi|322118906|gb|EFX91088.1| ribonuclease HII [Actinobacillus ureae ATCC 25976]
          Length = 197

 Score =  273 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 90/187 (48%), Positives = 120/187 (64%), Gaps = 2/187 (1%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
           N   +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L E+I + A+ 
Sbjct: 9   NAHLIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLLLAEEIKAKALC 68

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            S+  A  + ID+ NI  AT+ A+  AV  L + P   L+DG  IP  LP  A AVIKGD
Sbjct: 69  WSLGRAEPEEIDQLNILHATMLAMQRAVAGLNIWPDFVLVDGNHIPT-LPMPAQAVIKGD 127

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S+   I+AASI+AKV RD+ M    K+YP+YGF  H GYPT  H + +++ G +  HR +
Sbjct: 128 SLVAEISAASILAKVARDQEMDELDKQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKS 187

Query: 201 FRPLRNL 207
           F P++ +
Sbjct: 188 FAPVKKI 194


>gi|254440277|ref|ZP_05053771.1| ribonuclease HII [Octadecabacter antarcticus 307]
 gi|198255723|gb|EDY80037.1| ribonuclease HII [Octadecabacter antarcticus 307]
          Length = 206

 Score =  272 bits (696), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 91/201 (45%), Positives = 127/201 (63%), Gaps = 3/201 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E  +  + +  +AG+DEVGRG LAGPV  AA+ILDP NIP G+NDSK +S KKRE
Sbjct: 5   PDFTFEQDLFARGILRIAGVDEVGRGPLAGPVTAAAVILDPANIPDGLNDSKALSRKKRE 64

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIP 126
            L   I +SA +SI+ A+ + ID+ NI +A+  A+  A+  L         ALIDG  +P
Sbjct: 65  LLEPLIFASAEVSIAHATVEEIDEINILRASHLAMERAIAGLGAGLNRVDHALIDGNMVP 124

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             L   A  +IKGD+ SLSIAAASI+AK+ RDR+M    + YP YG+D++ GY +  H  
Sbjct: 125 RGLIIPATTIIKGDARSLSIAAASIVAKICRDRIMVELAQHYPGYGWDTNAGYGSKSHIS 184

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            ++  G +  HR +F+P+ N+
Sbjct: 185 ALQNIGVTPHHRRSFKPVHNM 205


>gi|28899078|ref|NP_798683.1| ribonuclease HII [Vibrio parahaemolyticus RIMD 2210633]
 gi|260362393|ref|ZP_05775348.1| ribonuclease HII [Vibrio parahaemolyticus K5030]
 gi|260876840|ref|ZP_05889195.1| ribonuclease HII [Vibrio parahaemolyticus AN-5034]
 gi|260897272|ref|ZP_05905768.1| ribonuclease HII [Vibrio parahaemolyticus Peru-466]
 gi|31076897|sp|Q87MF1|RNH2_VIBPA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|28807302|dbj|BAC60567.1| ribonuclease HII [Vibrio parahaemolyticus RIMD 2210633]
 gi|308085359|gb|EFO35054.1| ribonuclease HII [Vibrio parahaemolyticus Peru-466]
 gi|308091461|gb|EFO41156.1| ribonuclease HII [Vibrio parahaemolyticus AN-5034]
 gi|308113983|gb|EFO51523.1| ribonuclease HII [Vibrio parahaemolyticus K5030]
          Length = 211

 Score =  272 bits (696), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 92/200 (46%), Positives = 122/200 (61%), Gaps = 7/200 (3%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E P FE       +    +AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KK
Sbjct: 13  ELPPFEYP-----QGYQLIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKK 67

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L  +I   A+  ++   S + ID+ NI +AT+ A+  A+  L+V P  ALIDG   P
Sbjct: 68  RLALLPEIKEKALAWAVGRCSPEEIDELNILQATMVAMQRAITGLKVQPDLALIDGNRCP 127

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           E LP  + AV+KGD     I+AASIIAKV RD+ M    K+YP +GF  H GYPT  H +
Sbjct: 128 E-LPMDSQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKQYPQFGFAKHKGYPTKAHFE 186

Query: 187 VIKEKGPSCIHRLTFRPLRN 206
            I++ G    HR +F+P++ 
Sbjct: 187 AIEQHGVISEHRKSFKPVKK 206


>gi|307706602|ref|ZP_07643409.1| ribonuclease HII [Streptococcus mitis SK321]
 gi|307618057|gb|EFN97217.1| ribonuclease HII [Streptococcus mitis SK321]
          Length = 259

 Score =  272 bits (696), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 87/199 (43%), Positives = 126/199 (63%), Gaps = 3/199 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ +  +AG+DEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK  E+
Sbjct: 58  LSYEKELYKQGLTLIAGVDEVGRGPLAGPVVAAAVILPKNCKIRGLNDSKKIPKKKHLEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DLP
Sbjct: 118 FQAVQDQALSIGIGIMDNQVIDQVNIYEATKLAMQEAISQLSPQPDHLLIDAMKL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAKH + + +
Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFTANAGYGTAKHLEGLTK 235

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            G + IHR +F P+++L +
Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254


>gi|260902377|ref|ZP_05910772.1| ribonuclease HII [Vibrio parahaemolyticus AQ4037]
 gi|308110185|gb|EFO47725.1| ribonuclease HII [Vibrio parahaemolyticus AQ4037]
 gi|328474385|gb|EGF45190.1| ribonuclease HII [Vibrio parahaemolyticus 10329]
          Length = 211

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 87/187 (46%), Positives = 117/187 (62%), Gaps = 2/187 (1%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +    +AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KKR  L  +I   A+
Sbjct: 21  QGYQLIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEKAL 80

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             ++   S + ID+ NI +AT+ A+  A+  L+V P   LIDG   PE LP  + AV+KG
Sbjct: 81  AWAVGRCSPEEIDELNILQATMVAMQRAIAGLKVQPDLVLIDGNRCPE-LPMDSQAVVKG 139

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D     I+AASIIAKV RD+ M    K+YP +GF  H GYPT  H + I++ G    HR 
Sbjct: 140 DLRVAEISAASIIAKVVRDQEMEELDKQYPQFGFAKHKGYPTKAHFEAIEQHGVISEHRK 199

Query: 200 TFRPLRN 206
           +F+P++ 
Sbjct: 200 SFKPVKK 206


>gi|126460898|ref|YP_001042012.1| ribonuclease HII [Rhodobacter sphaeroides ATCC 17029]
 gi|166226644|sp|A3PFX4|RNH2_RHOS1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|126102562|gb|ABN75240.1| Ribonuclease H [Rhodobacter sphaeroides ATCC 17029]
          Length = 212

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 86/198 (43%), Positives = 125/198 (63%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P +  E     +    V G+DEVGRG LAGPV  AA+ L P  IP G+NDSKK++  +RE
Sbjct: 6   PDWTHETAALAEGFTCVVGVDEVGRGPLAGPVTAAAVRLFPGRIPEGLNDSKKLTALRRE 65

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L  +I + A +SI+ AS + ID+ NI +A+  A+  A+  L   P  ALIDG  +P+ L
Sbjct: 66  MLAAEIHTVAEVSIAHASVEEIDRLNILQASHLAMGRALAGLPSRPDFALIDGHMVPKGL 125

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             +  A++KGD++ LSIAAASI+AKV RDR+M    +++P YG+ ++ GY T  H Q + 
Sbjct: 126 GHRCRAIVKGDALCLSIAAASIVAKVARDRIMVDLEQQHPGYGWRTNAGYGTKDHLQALL 185

Query: 190 EKGPSCIHRLTFRPLRNL 207
             GP+  HR +F+P+ N+
Sbjct: 186 NLGPTPHHRRSFKPVHNI 203


>gi|225858944|ref|YP_002740454.1| ribonuclease HII [Streptococcus pneumoniae 70585]
 gi|254807989|sp|C1C7C8|RNH2_STRP7 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|225721844|gb|ACO17698.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae 70585]
          Length = 259

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 87/199 (43%), Positives = 125/199 (62%), Gaps = 3/199 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ +  +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK  E+
Sbjct: 58  LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DLP
Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD LM+   +++  Y F ++ GY TAKH + + +
Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFSGYDFATNAGYGTAKHLEGLTK 235

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            G + IHR +F P+++L +
Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254


>gi|295399793|ref|ZP_06809774.1| Ribonuclease H [Geobacillus thermoglucosidasius C56-YS93]
 gi|312111695|ref|YP_003990011.1| ribonuclease H [Geobacillus sp. Y4.1MC1]
 gi|294978196|gb|EFG53793.1| Ribonuclease H [Geobacillus thermoglucosidasius C56-YS93]
 gi|311216796|gb|ADP75400.1| Ribonuclease H [Geobacillus sp. Y4.1MC1]
          Length = 268

 Score =  271 bits (695), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 86/196 (43%), Positives = 124/196 (63%), Gaps = 3/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  +  + +  +AGIDE GRG LAGPVV AA+IL  +    G+NDSKK+S  KRE L+
Sbjct: 61  RYERQLFAQGIKYIAGIDEAGRGPLAGPVVAAAVILPKDAYIPGLNDSKKLSEAKRETLF 120

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I S A+ I I   +   ID+ NI++AT  A+  AVE L   P   L+D  ++P  +P 
Sbjct: 121 HMIQSCAVSIGIGVVTAAEIDEINIYEATKKAMIKAVEQLSPKPDYLLVDAMTLP--IPM 178

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              +++KGD+ S+SIAA+S+IAKVTRD  M+   K+YP YGF+ ++GY TA+H + I+  
Sbjct: 179 PQQSIVKGDANSVSIAASSVIAKVTRDHFMKQLAKRYPQYGFEKNMGYGTAQHLEAIRTY 238

Query: 192 GPSCIHRLTFRPLRNL 207
           G    HRL+F P++ +
Sbjct: 239 GTIDEHRLSFSPIKEM 254


>gi|225856834|ref|YP_002738345.1| ribonuclease HII [Streptococcus pneumoniae P1031]
 gi|254807993|sp|C1CKQ7|RNH2_STRZP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|225725074|gb|ACO20926.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae P1031]
          Length = 259

 Score =  271 bits (695), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 87/199 (43%), Positives = 125/199 (62%), Gaps = 3/199 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ +  +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK  E+
Sbjct: 58  LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DLP
Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD LM+   +++  Y F ++ GY TAKH + + +
Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFSGYDFATNAGYGTAKHLEGLTK 235

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            G + IHR +F P+++L +
Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254


>gi|148994505|ref|ZP_01823685.1| ribonuclease HII [Streptococcus pneumoniae SP9-BS68]
 gi|168483218|ref|ZP_02708170.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC1873-00]
 gi|168488985|ref|ZP_02713184.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae SP195]
 gi|147927175|gb|EDK78211.1| ribonuclease HII [Streptococcus pneumoniae SP9-BS68]
 gi|172043371|gb|EDT51417.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC1873-00]
 gi|183572489|gb|EDT93017.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae SP195]
 gi|332201627|gb|EGJ15697.1| ribonuclease HII [Streptococcus pneumoniae GA47368]
          Length = 259

 Score =  271 bits (695), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 87/199 (43%), Positives = 125/199 (62%), Gaps = 3/199 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ +  +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK  E+
Sbjct: 58  LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DLP
Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD LM+   +++  Y F ++ GY TAKH + + +
Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFSGYDFATNAGYGTAKHLEGLTK 235

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            G + IHR +F P+++L +
Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254


>gi|171912710|ref|ZP_02928180.1| Ribonuclease H [Verrucomicrobium spinosum DSM 4136]
          Length = 233

 Score =  271 bits (695), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 88/202 (43%), Positives = 126/202 (62%), Gaps = 3/202 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           RP F  E  +R++    VAG+DE GRG LAGPV VAA+IL  +     ++DSK+++  +R
Sbjct: 27  RPTFRYEMELRQEGHQVVAGVDEAGRGPLAGPVSVAAVILPDDFTHAELHDSKQLTELRR 86

Query: 69  EELYEKITSSA--IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           E +Y+++   A  +          ID+ NI +AT   +  AV+ L ++P + LIDG  +P
Sbjct: 87  ERIYDELMGRADVLWCHVMVEVDEIDRINILQATRMGMRRAVQGLSMLPHAVLIDGTPVP 146

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            D P    A++KGD++SLSIAAAS+IAKV RDRLMR A   YP YGFD H GY T +H +
Sbjct: 147 -DFPVPHRALVKGDALSLSIAAASVIAKVARDRLMRQAALDYPVYGFDQHKGYGTPEHLE 205

Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208
            ++  GP  +HR +F P+  L+
Sbjct: 206 ALRRHGPCPLHRRSFSPVSQLT 227


>gi|153839485|ref|ZP_01992152.1| ribonuclease HII [Vibrio parahaemolyticus AQ3810]
 gi|149746990|gb|EDM57978.1| ribonuclease HII [Vibrio parahaemolyticus AQ3810]
          Length = 211

 Score =  271 bits (695), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 92/200 (46%), Positives = 122/200 (61%), Gaps = 7/200 (3%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E P FE       +    +AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KK
Sbjct: 13  ELPPFEYP-----QGYQLIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKK 67

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L  +I   A+  ++   S + ID+ NI +AT+ A+  A+  L+V P  ALIDG   P
Sbjct: 68  RLALLPEIKEKALAWAVGRCSPEEIDELNILQATMVAMQRAIAGLKVQPDLALIDGNRCP 127

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           E LP  + AV+KGD     I+AASIIAKV RD+ M    K+YP +GF  H GYPT  H +
Sbjct: 128 E-LPMDSQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKQYPQFGFAKHKGYPTKAHFE 186

Query: 187 VIKEKGPSCIHRLTFRPLRN 206
            I++ G    HR +F+P++ 
Sbjct: 187 AIEQHGVISEHRKSFKPVKK 206


>gi|332073501|gb|EGI83980.1| ribonuclease HII [Streptococcus pneumoniae GA17570]
          Length = 260

 Score =  271 bits (695), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 87/199 (43%), Positives = 125/199 (62%), Gaps = 3/199 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ +  +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK  E+
Sbjct: 58  LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DLP
Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD LM+   +++  Y F ++ GY TAKH + + +
Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFSGYDFATNAGYGTAKHLEGLTK 235

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            G + IHR +F P+++L +
Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254


>gi|239826598|ref|YP_002949222.1| ribonuclease H [Geobacillus sp. WCH70]
 gi|259494066|sp|C5D8U9|RNH2_GEOSW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|239806891|gb|ACS23956.1| Ribonuclease H [Geobacillus sp. WCH70]
          Length = 277

 Score =  271 bits (695), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 87/196 (44%), Positives = 123/196 (62%), Gaps = 3/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  + E+ +  +AGIDE GRG LAGPVV AA++L  +    G+NDSKK+S  KRE L+
Sbjct: 61  RYERQLFEQGIEYIAGIDEAGRGPLAGPVVAAAVMLPKDAYIPGLNDSKKLSEAKREMLF 120

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I S AI I I   +   ID+ NI++AT  A+  AVE L   P   LID  ++P  +  
Sbjct: 121 HMIQSCAISIGIGVVTAAEIDEMNIYEATKKAMIKAVEQLSPKPDYLLIDAMTLP--IST 178

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              +++KGD+ S+SIAA+SIIAKVTRD  M+   K+YP YGF+ ++GY TA+H + I+  
Sbjct: 179 PQQSIVKGDANSVSIAASSIIAKVTRDHFMKQLAKQYPQYGFEKNMGYGTAQHLEAIRVY 238

Query: 192 GPSCIHRLTFRPLRNL 207
           G    HR +F P++ +
Sbjct: 239 GTIDEHRRSFSPIKEM 254


>gi|307708682|ref|ZP_07645145.1| ribonuclease HII [Streptococcus mitis NCTC 12261]
 gi|307615256|gb|EFN94466.1| ribonuclease HII [Streptococcus mitis NCTC 12261]
          Length = 259

 Score =  271 bits (694), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 88/209 (42%), Positives = 129/209 (61%), Gaps = 3/209 (1%)

Query: 2   FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61
               +  +     E  + ++ +  +AG+DEVGRG LAGPVV AA+IL  N    G+NDSK
Sbjct: 48  LDEDLRLKSMLSYEKELYKQGLTMIAGVDEVGRGPLAGPVVAAAVILPKNCKITGLNDSK 107

Query: 62  KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           KI  KK  E+++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LI
Sbjct: 108 KIPKKKHLEIFQAVQDQALSIGIGIMDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLI 167

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           D   +  DLP    ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY 
Sbjct: 168 DAMKL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEFDQQFPGYDFAANAGYG 225

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209
           TAKH + +K+ G + IHR +F P+++L +
Sbjct: 226 TAKHLEGLKKIGVTPIHRTSFEPVKSLVL 254


>gi|148989186|ref|ZP_01820576.1| ribonuclease HII [Streptococcus pneumoniae SP6-BS73]
 gi|147925409|gb|EDK76487.1| ribonuclease HII [Streptococcus pneumoniae SP6-BS73]
          Length = 259

 Score =  271 bits (694), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 85/199 (42%), Positives = 124/199 (62%), Gaps = 3/199 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ +  + GIDEVGRG LAGPVV AA+IL  N     +NDSKKI  KK  E+
Sbjct: 58  LSYEKELYKQGLTLIVGIDEVGRGPLAGPVVAAAVILPKNCKIKDLNDSKKIPKKKHLEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ +   ++ I I    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DLP
Sbjct: 118 FQAVQDQSLSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAKH + + +
Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            G + IHR +F P+++L +
Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254


>gi|156975492|ref|YP_001446399.1| ribonuclease HII [Vibrio harveyi ATCC BAA-1116]
 gi|166226667|sp|A7MY01|RNH2_VIBHB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|156527086|gb|ABU72172.1| hypothetical protein VIBHAR_03223 [Vibrio harveyi ATCC BAA-1116]
          Length = 212

 Score =  271 bits (694), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 93/200 (46%), Positives = 122/200 (61%), Gaps = 7/200 (3%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E P FE       +    VAG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KK
Sbjct: 13  ELPPFEYP-----QGYQLVAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKK 67

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L  +I   A+  ++   S + ID+ NI +AT+ A+  A+  L+V P  ALIDG   P
Sbjct: 68  RLALLPEIKEKALAWAVGRCSPEEIDELNILQATMVAMQRAIAGLKVQPDLALIDGNRCP 127

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           E LP  + AV+KGD     I+AASIIAKV RD+ M    K+YP +GF  H GYPT  H +
Sbjct: 128 E-LPMDSQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKQYPQFGFAKHKGYPTKAHFE 186

Query: 187 VIKEKGPSCIHRLTFRPLRN 206
            I++ G    HR +F+P++ 
Sbjct: 187 AIEQHGVISEHRKSFKPVKK 206


>gi|254462688|ref|ZP_05076104.1| ribonuclease HII [Rhodobacterales bacterium HTCC2083]
 gi|206679277|gb|EDZ43764.1| ribonuclease HII [Rhodobacteraceae bacterium HTCC2083]
          Length = 208

 Score =  271 bits (694), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 88/198 (44%), Positives = 131/198 (66%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P +  E   + + +  VAG+DEVGRG LAGPV  AA+ILDP  IP G+NDSKK+S KKR+
Sbjct: 6   PDYSFEQRAQARGLSIVAGVDEVGRGPLAGPVTAAAVILDPMRIPQGLNDSKKLSAKKRQ 65

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L++ +   A +SI+ AS + ID+ NI +A+  A+  AV  L+  P   LIDG  IP  L
Sbjct: 66  ALHDDLLLCADVSIAHASVEEIDELNILRASHLAMERAVAGLKQRPNHLLIDGNMIPRGL 125

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              + A++KGDS S+SI+AASI+AK+ RD +M    + YP YG++++ GYP+  H+  ++
Sbjct: 126 AGLSEAIVKGDSRSVSISAASIVAKICRDYVMWDLGQHYPGYGWETNAGYPSKSHKLALE 185

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + G +  HR +F+P+ N+
Sbjct: 186 KLGVTPHHRRSFKPVHNI 203


>gi|107103156|ref|ZP_01367074.1| hypothetical protein PaerPA_01004225 [Pseudomonas aeruginosa PACS2]
 gi|218890133|ref|YP_002438997.1| ribonuclease HII [Pseudomonas aeruginosa LESB58]
 gi|254236556|ref|ZP_04929879.1| ribonuclease HII [Pseudomonas aeruginosa C3719]
 gi|254242340|ref|ZP_04935662.1| ribonuclease HII [Pseudomonas aeruginosa 2192]
 gi|226736823|sp|B7V7U6|RNH2_PSEA8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|126168487|gb|EAZ53998.1| ribonuclease HII [Pseudomonas aeruginosa C3719]
 gi|126195718|gb|EAZ59781.1| ribonuclease HII [Pseudomonas aeruginosa 2192]
 gi|218770356|emb|CAW26121.1| ribonuclease HII [Pseudomonas aeruginosa LESB58]
          Length = 201

 Score =  271 bits (694), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 94/184 (51%), Positives = 119/184 (64%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L GPVV AA+ILDP+    G+NDSKK+S  +RE L+E+I   A+   I
Sbjct: 13  LVAGVDEVGRGPLCGPVVTAAVILDPSRPILGLNDSKKLSEARREALFEEIREKALAWCI 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI  AT+ A+  AVE L V PR ALIDG   P+ L      V+KGDS  
Sbjct: 73  ARAEVEEIDRLNILHATMLAMQRAVEGLSVTPRLALIDGNRCPK-LAVPCAPVVKGDSQV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV+RDR M    + YP YG   H GYPTA H + +   GP+ IHR +F P
Sbjct: 132 PAIAAASILAKVSRDREMVELDRVYPGYGMAGHKGYPTAVHLEALSRLGPTPIHRRSFAP 191

Query: 204 LRNL 207
           +R L
Sbjct: 192 VREL 195


>gi|153835395|ref|ZP_01988062.1| ribonuclease HII [Vibrio harveyi HY01]
 gi|269960605|ref|ZP_06174977.1| ribonuclease HII [Vibrio harveyi 1DA3]
 gi|148868081|gb|EDL67253.1| ribonuclease HII [Vibrio harveyi HY01]
 gi|269834682|gb|EEZ88769.1| ribonuclease HII [Vibrio harveyi 1DA3]
          Length = 212

 Score =  271 bits (693), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 92/200 (46%), Positives = 122/200 (61%), Gaps = 7/200 (3%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E P FE       +    VAG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KK
Sbjct: 13  ELPPFEYP-----QGYQLVAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKK 67

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L  +I   A+  ++   S + ID+ NI +AT+ A+  A+  L+V P  ALIDG   P
Sbjct: 68  RLALLPEIKEKALAWAVGRCSPEEIDELNILQATMVAMQRAIAGLKVQPDLALIDGNRCP 127

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           + LP  + AV+KGD     I+AASIIAKV RD+ M    K+YP +GF  H GYPT  H +
Sbjct: 128 Q-LPMDSQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKQYPQFGFAKHKGYPTKAHFE 186

Query: 187 VIKEKGPSCIHRLTFRPLRN 206
            I++ G    HR +F+P++ 
Sbjct: 187 AIEQHGVISEHRKSFKPVKK 206


>gi|116051639|ref|YP_789522.1| ribonuclease HII [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296387853|ref|ZP_06877328.1| ribonuclease HII [Pseudomonas aeruginosa PAb1]
 gi|313109047|ref|ZP_07795019.1| ribonuclease HII [Pseudomonas aeruginosa 39016]
 gi|122260782|sp|Q02RB4|RNH2_PSEAB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|115586860|gb|ABJ12875.1| ribonuclease HII [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310881521|gb|EFQ40115.1| ribonuclease HII [Pseudomonas aeruginosa 39016]
          Length = 201

 Score =  271 bits (693), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 94/184 (51%), Positives = 120/184 (65%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L GPVV AA+ILDP+    G+NDSKK+S  +RE L+E+I   A+   I
Sbjct: 13  LVAGVDEVGRGPLCGPVVTAAVILDPSRPILGLNDSKKLSEARREALFEEIREKALAWCI 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI  AT+ A+  AVE L V PR ALIDG   P+ L   +  V+KGDS  
Sbjct: 73  ARAEVEEIDRLNILHATMLAMQRAVEGLSVTPRLALIDGNRCPK-LAVPSAPVVKGDSQV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV+RDR M    + YP YG   H GYPTA H + +   GP+ IHR +F P
Sbjct: 132 PAIAAASILAKVSRDREMVELDRVYPGYGMAGHKGYPTAVHLEALSRLGPTPIHRRSFAP 191

Query: 204 LRNL 207
           +R L
Sbjct: 192 VREL 195


>gi|222085047|ref|YP_002543576.1| ribonuclease HII protein [Agrobacterium radiobacter K84]
 gi|221722495|gb|ACM25651.1| ribonuclease HII protein [Agrobacterium radiobacter K84]
          Length = 218

 Score =  271 bits (693), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 105/206 (50%), Positives = 139/206 (67%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           M  +  P  P FELE + R    WPVAG DE GRG LAGPVV AA+ILDP  IP G+NDS
Sbjct: 10  MLFDEGPIVPTFELELIARRAGHWPVAGADEAGRGPLAGPVVAAAVILDPERIPQGLNDS 69

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K++S  +RE L+ +I ++A +SI+S+S   ID  +I KA+LDA+  A+ +L +     L 
Sbjct: 70  KQLSAARREALFAEILATATVSIASSSAGRIDVTDIRKASLDAMRRAICSLAMPASYVLT 129

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG  +P  L C   AV+KGD+ S SIAAASI+AKVTRDR+M  A   +P YGF +H GY 
Sbjct: 130 DGLDVPAGLACPGKAVVKGDARSFSIAAASIVAKVTRDRMMARAGIVFPAYGFAAHAGYG 189

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206
           TA+H+  I++ GP  +HR++FRPLR 
Sbjct: 190 TAQHRAGIEKHGPCSLHRMSFRPLRR 215


>gi|270292737|ref|ZP_06198948.1| ribonuclease HII [Streptococcus sp. M143]
 gi|270278716|gb|EFA24562.1| ribonuclease HII [Streptococcus sp. M143]
          Length = 259

 Score =  271 bits (693), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 88/197 (44%), Positives = 124/197 (62%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ M  +AG+DEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK  E+
Sbjct: 58  LSYEKELYKQGMTFIAGVDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ +   A+ I +    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DLP
Sbjct: 118 FQAVQDQALAIGVGIMDNQIIDQVNIYEATKLAMKEAISQLSPQPEHLLIDAMQL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               A+IKGD+ SLSIAAASI+AKVTRD +M+    +YP Y F ++ GY TAKH + +++
Sbjct: 176 ISQTAIIKGDANSLSIAAASIVAKVTRDNIMKDYDNQYPGYDFAANAGYGTAKHLEGLEK 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR +F P++ L
Sbjct: 236 LGVTPIHRTSFEPVKTL 252


>gi|327392811|dbj|BAK10233.1| ribonuclease HII RnhB [Pantoea ananatis AJ13355]
          Length = 231

 Score =  271 bits (693), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 94/207 (45%), Positives = 120/207 (57%), Gaps = 9/207 (4%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           M C S+P    F   A         +AG+DEVGRG L G VV AA+ILDP N   G+ DS
Sbjct: 17  MRCWSLP-MADFIYPAA------GCIAGVDEVGRGPLVGAVVTAAVILDPANPVPGLADS 69

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           KK+S K+R  L+++I   A+  S+  A    ID  NI  AT+ A+  AV  L + P   L
Sbjct: 70  KKLSEKRRLALFDQIKEKALAWSLGRAEPDEIDNLNILHATMLAMQRAVAGLSITPDFVL 129

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           IDG   P  LP  + AV+KGDS+   I+AASIIAKVTRDR M      +P YGF  H GY
Sbjct: 130 IDGNRCPA-LPMPSLAVVKGDSLVAEISAASIIAKVTRDREMAELDLLFPQYGFAQHKGY 188

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           PTA H + + + G +  HR +F P+RN
Sbjct: 189 PTALHMEKLTQYGATPHHRRSFAPVRN 215


>gi|254503735|ref|ZP_05115886.1| ribonuclease HII [Labrenzia alexandrii DFL-11]
 gi|222439806|gb|EEE46485.1| ribonuclease HII [Labrenzia alexandrii DFL-11]
          Length = 218

 Score =  271 bits (693), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 89/205 (43%), Positives = 125/205 (60%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           +F  + P+ P  ++E    +     + G+DE GRG  AGPVV AA+ILD  N+P G+NDS
Sbjct: 7   LFDLAFPDNPDLKIEKKHAKSYDGLLCGVDEAGRGPWAGPVVTAAVILDYANVPAGLNDS 66

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           KK++  KRE L+ +I  ++ +  +SAS   +DK NI  ATL A+  AV  L  +P+  LI
Sbjct: 67  KKLTEAKRESLFGEILKTSWVCAASASPATVDKLNIRTATLSAMVRAVNGLPRVPQYVLI 126

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DGR +P  L     A+IKGD   L +AAASI+AKV RDR+M     ++P YGF  H GY 
Sbjct: 127 DGRDVPPGLAQPGQALIKGDGRCLCVAAASIVAKVLRDRMMVALEPEFPGYGFAQHKGYG 186

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLR 205
              HQ  +   GP+  HR++F+P+R
Sbjct: 187 VPAHQAALDTLGPTAHHRMSFKPVR 211


>gi|197336053|ref|YP_002156776.1| ribonuclease HII [Vibrio fischeri MJ11]
 gi|238690074|sp|B5F9W2|RNH2_VIBFM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|197317543|gb|ACH66990.1| ribonuclease HII [Vibrio fischeri MJ11]
          Length = 207

 Score =  271 bits (693), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 94/202 (46%), Positives = 119/202 (58%), Gaps = 7/202 (3%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
            E P FE             AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK++ K
Sbjct: 8   KELPPFEYPE-----GYQLFAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTDK 62

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           KRE L+ +I   A+  S+       ID+ NI +AT+ A+  A+  L + P  ALIDG  +
Sbjct: 63  KRELLFPEIQEKALAWSLGRCEAHEIDELNILQATMVAMQRAIAGLNITPDFALIDGNKV 122

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           PE LP    AV+KGD     I+AASIIAKVTRDR M    K YP YGF  H GYPT  H 
Sbjct: 123 PE-LPMAGLAVVKGDLRVQEISAASIIAKVTRDREMEELDKAYPQYGFAKHKGYPTKAHF 181

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
           + I+E G    HR +F+P++ +
Sbjct: 182 EAIEEHGVISEHRRSFKPVKRV 203


>gi|254363172|ref|ZP_04979221.1| ribonuclease H [Mannheimia haemolytica PHL213]
 gi|261493949|ref|ZP_05990457.1| ribonuclease H [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261494766|ref|ZP_05991245.1| ribonuclease H [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|153095066|gb|EDN75617.1| ribonuclease H [Mannheimia haemolytica PHL213]
 gi|261309583|gb|EEY10807.1| ribonuclease H [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261310381|gb|EEY11576.1| ribonuclease H [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 198

 Score =  271 bits (693), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 90/187 (48%), Positives = 117/187 (62%), Gaps = 2/187 (1%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
           N   +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR+ L E+I + A+ 
Sbjct: 8   NARLIAGVDEVGRGPLVGAVVTAAVILDPNNPIQGLTDSKKLSEKKRQALAEEIKAKALS 67

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            S+  A    ID+ NI  AT+ A+  AV  L + P   LIDG   P  LP  A AV+KGD
Sbjct: 68  WSLGRAEPTEIDELNILNATMLAMQRAVAGLHIQPDFVLIDGNR-PPKLPMPAQAVVKGD 126

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S+   I+AASIIAKV RD+ M    +++P YGF  H GYPT  H + + E G +  HR +
Sbjct: 127 SLVAEISAASIIAKVARDQEMDELDQQFPQYGFAQHKGYPTKLHFEKLAEFGATPYHRKS 186

Query: 201 FRPLRNL 207
           F P+R +
Sbjct: 187 FAPVRKV 193


>gi|15901021|ref|NP_345625.1| ribonuclease HII [Streptococcus pneumoniae TIGR4]
 gi|111658304|ref|ZP_01408994.1| hypothetical protein SpneT_02000533 [Streptococcus pneumoniae
           TIGR4]
 gi|32171703|sp|Q97QP5|RNH2_STRPN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|14972634|gb|AAK75265.1| ribonuclease HII [Streptococcus pneumoniae TIGR4]
          Length = 259

 Score =  271 bits (693), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 87/199 (43%), Positives = 126/199 (63%), Gaps = 3/199 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ +  +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK  E+
Sbjct: 58  LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILSKNCKIKGLNDSKKIPKKKHLEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DLP
Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD L++   +++P Y F ++ GY TAKH + + +
Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELLKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            G + IHR +F P+++L +
Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254


>gi|241890105|ref|ZP_04777403.1| ribonuclease HII [Gemella haemolysans ATCC 10379]
 gi|241863727|gb|EER68111.1| ribonuclease HII [Gemella haemolysans ATCC 10379]
          Length = 258

 Score =  271 bits (693), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 96/208 (46%), Positives = 129/208 (62%), Gaps = 3/208 (1%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           +F     E+  F  E          + GIDEVGRG LAGPVV AA+IL  +N   G+NDS
Sbjct: 46  LFYKKEYEKKSF-YENKCYNNGCKYICGIDEVGRGPLAGPVVAAAVILKKDNYFEGLNDS 104

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           KK+S KKREELYE+I   A+  +I    +  I+K+NI+ A   A+  AVE L+V P   L
Sbjct: 105 KKLSEKKREELYEQIRKEAVAYAICEVDNIEIEKYNIYNAARIAMQRAVEKLEVKPDFLL 164

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           ID     E+ P   F+++KGD  S+SIAAAS+IAKV RD LM+   KKYP Y F+++ GY
Sbjct: 165 IDAMPF-ENYPIPNFSMVKGDEKSVSIAAASVIAKVYRDNLMKEYAKKYPHYDFENNAGY 223

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
            T KH + +KE G + IHR  F P++++
Sbjct: 224 GTKKHLEGLKEHGVTPIHRRDFEPIKSM 251


>gi|15598838|ref|NP_252332.1| ribonuclease HII [Pseudomonas aeruginosa PAO1]
 gi|37999786|sp|Q9HXY9|RNH2_PSEAE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|9949802|gb|AAG07030.1|AE004784_3 ribonuclease HII [Pseudomonas aeruginosa PAO1]
          Length = 201

 Score =  270 bits (692), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 95/184 (51%), Positives = 120/184 (65%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L GPVV AA+ILDP+    G+NDSKK+S  +RE L+E+I   A+   I
Sbjct: 13  LVAGVDEVGRGPLCGPVVTAAVILDPSRPILGLNDSKKLSEARREALFEEIREKALAWCI 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI  AT+ A+  AVE L VIPR ALIDG   P+ L      V+KGDS  
Sbjct: 73  ARAEVEEIDRLNILHATMLAMQRAVEGLSVIPRLALIDGNRCPK-LAVPCAPVVKGDSQV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV+RDR M    + YP YG   H GYPTA H + +   GP+ IHR +F P
Sbjct: 132 PAIAAASILAKVSRDREMVELDRVYPGYGMAGHKGYPTAVHLEALSRLGPTPIHRRSFAP 191

Query: 204 LRNL 207
           +R L
Sbjct: 192 VREL 195


>gi|152983475|ref|YP_001346881.1| ribonuclease HII [Pseudomonas aeruginosa PA7]
 gi|166226639|sp|A6V1E6|RNH2_PSEA7 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|150958633|gb|ABR80658.1| ribonuclease HII [Pseudomonas aeruginosa PA7]
          Length = 201

 Score =  270 bits (692), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 93/184 (50%), Positives = 119/184 (64%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L GPVV AA+ILDP+    G+NDSKK+S  +RE L+E+I   A+   +
Sbjct: 13  LVAGVDEVGRGPLCGPVVTAAVILDPSRPILGLNDSKKLSEARREALFEEIREKALAWCV 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI  AT+ A+  AVE L V PR ALIDG   P  L   +  V+KGDS  
Sbjct: 73  ARAEVEEIDRLNILHATMLAMQRAVEGLSVTPRLALIDGNRCPR-LAVPSAPVVKGDSQV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV+RDR M    + YP YG   H GYPTA H + +   GP+ IHR +F P
Sbjct: 132 PAIAAASILAKVSRDREMVELDRLYPGYGMAGHKGYPTAVHLEALSRLGPTPIHRRSFAP 191

Query: 204 LRNL 207
           +R L
Sbjct: 192 VREL 195


>gi|324992892|gb|EGC24812.1| ribonuclease HII [Streptococcus sanguinis SK405]
          Length = 254

 Score =  270 bits (692), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 85/197 (43%), Positives = 121/197 (61%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +     +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  KK +E+
Sbjct: 58  LRYEKELYQAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ + + A+ + +    ++ ID+ NI++AT  A+  A+  L   P   LID   +  D+ 
Sbjct: 118 YQTVMNKALAVGVGLIDNEIIDQVNIYEATKLAMKEALSKLSFKPDYLLIDAMKL--DID 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD+LM    K+YP Y F  + GY T  H Q ++ 
Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSHLQGLER 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR TF P++++
Sbjct: 236 HGVTPIHRKTFEPVKSM 252


>gi|323495348|ref|ZP_08100426.1| ribonuclease HII [Vibrio brasiliensis LMG 20546]
 gi|323310419|gb|EGA63605.1| ribonuclease HII [Vibrio brasiliensis LMG 20546]
          Length = 205

 Score =  270 bits (692), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 89/186 (47%), Positives = 115/186 (61%), Gaps = 2/186 (1%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
               VAG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KKR  L  +I   A+ 
Sbjct: 16  GYQLVAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEKALA 75

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            S+   S + ID+ NI +AT+ A+  A+  L V P  ALIDG   PE LP  + AV+KGD
Sbjct: 76  WSVGRCSPEEIDQLNILQATMVAMQRAIAGLGVQPDLALIDGNRCPE-LPMDSQAVVKGD 134

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
                I+AASIIAKV RD+ M    K +P +GF  H GYPT  H + I++ G    HR +
Sbjct: 135 LRVAEISAASIIAKVVRDQEMEELDKLHPQFGFAKHKGYPTKAHFEAIEQHGVIEQHRKS 194

Query: 201 FRPLRN 206
           F+P++ 
Sbjct: 195 FKPVKR 200


>gi|254452091|ref|ZP_05065528.1| ribonuclease HII [Octadecabacter antarcticus 238]
 gi|198266497|gb|EDY90767.1| ribonuclease HII [Octadecabacter antarcticus 238]
          Length = 209

 Score =  270 bits (692), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 91/201 (45%), Positives = 127/201 (63%), Gaps = 1/201 (0%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           P  P F  E  +  +    +AG+DEVGRG LAGPV  AA+ILDP NIP G+NDSK +S K
Sbjct: 9   PSGPDFTFEEDLISRGAICIAGVDEVGRGPLAGPVTAAAVILDPANIPDGLNDSKMLSRK 68

Query: 67  KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           KRE L   I ++A +SI+ A+ + ID+ NI +A+  A+  A+  L  +   ALIDG  IP
Sbjct: 69  KREALEPLIFANAEVSIAHATVEEIDEINILRASHLAMERAIAGLGRV-DHALIDGNMIP 127

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             L   A  +IKGD+ SLSIAAASI+AK+ RDR+M    ++YP YG+D++ GY +  H  
Sbjct: 128 RGLIIPATTIIKGDARSLSIAAASIVAKICRDRIMVGLAQQYPGYGWDTNAGYGSKSHIS 187

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            +   G +  HR +F+P+  +
Sbjct: 188 ALHRLGVTPHHRRSFKPVHYM 208


>gi|313889379|ref|ZP_07823027.1| ribonuclease HII [Streptococcus pseudoporcinus SPIN 20026]
 gi|313122211|gb|EFR45302.1| ribonuclease HII [Streptococcus pseudoporcinus SPIN 20026]
          Length = 257

 Score =  270 bits (692), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 90/200 (45%), Positives = 122/200 (61%), Gaps = 6/200 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F  E  + ++    +AGIDEVGRG LAGPVV A ++L  N    G+NDSKKI   K   L
Sbjct: 59  FRYERDIYQQGYHCIAGIDEVGRGPLAGPVVAACVVLPKNCKIKGLNDSKKIPKSKHITL 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127
           +E+I   A+ I I    ++ ID  NI++AT  A+  A+ NL+   VIP   LID  ++  
Sbjct: 119 FEQIKKQAMGIGIGIVDNEMIDTINIYQATKLAMLEAINNLKKVEVIPDYLLIDAMTL-- 176

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           D+      +IKGD+ SLSIAAASIIAKVTRD+LM    + YP Y F  + GY T KH Q 
Sbjct: 177 DISIPQMPLIKGDANSLSIAAASIIAKVTRDQLMMSYDQTYPGYDFAQNAGYGTKKHLQG 236

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           +K  G + IHR +F P++++
Sbjct: 237 LKNYGVTPIHRKSFEPIKSM 256


>gi|84389778|ref|ZP_00991330.1| ribonuclease HII [Vibrio splendidus 12B01]
 gi|84376879|gb|EAP93753.1| ribonuclease HII [Vibrio splendidus 12B01]
          Length = 206

 Score =  270 bits (691), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 92/208 (44%), Positives = 124/208 (59%), Gaps = 7/208 (3%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           M      E P FE       +     AG+DEVGRG L G VV AA+ILDPNN   G+NDS
Sbjct: 1   MAVKEKKELPPFEYP-----QGYQLFAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDS 55

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           KK+S KKR  L+ +I   A+  S+   S Q ID+ NI +AT+ A+  A+  L V P  AL
Sbjct: 56  KKLSEKKRLALFPEIKEKALAWSVGRCSPQEIDEWNILQATMVAMQRAIAGLSVQPDMAL 115

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           IDG  +PE LP    A++KGD     I+AASIIAKV RD+ M    K +P++GF  H GY
Sbjct: 116 IDGNRVPE-LPMDGLAIVKGDLRVAEISAASIIAKVVRDQEMEELDKLHPEFGFAQHKGY 174

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           PT  H + I++ G +  +R +F+P++ +
Sbjct: 175 PTKAHFEAIEKHGVTEHYRKSFKPVKRI 202


>gi|99082490|ref|YP_614644.1| ribonuclease HII [Ruegeria sp. TM1040]
 gi|122984106|sp|Q1GD84|RNH2_SILST RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|99038770|gb|ABF65382.1| RNase HII [Ruegeria sp. TM1040]
          Length = 229

 Score =  270 bits (691), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 84/198 (42%), Positives = 125/198 (63%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P   LE   + +    +AG+DEVGRG LAGPV  AA++LD  ++P G+NDSKK++ ++R 
Sbjct: 28  PDLSLEEAAQARGYTRIAGVDEVGRGPLAGPVTAAAVVLDLADLPEGLNDSKKLTPRRRA 87

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L  +I + A  +++ AS + ID HNI +A+  A+  AV  L   P   LIDG  IP  L
Sbjct: 88  ALEPEIMARASYAVAHASVEEIDHHNILRASHLAMERAVAALDPQPDYLLIDGNLIPRAL 147

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              A AV+KGD  SLSIAAASI+AK  RDR+M    +++P YG++ + GYP+ +H+  + 
Sbjct: 148 HIPAEAVVKGDGRSLSIAAASILAKEARDRIMVDLAQQFPGYGWERNAGYPSKQHRDALI 207

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + G +  HR +F+P+  +
Sbjct: 208 KIGVTPHHRRSFKPVHKI 225


>gi|91223487|ref|ZP_01258752.1| ribonuclease HII [Vibrio alginolyticus 12G01]
 gi|269966265|ref|ZP_06180354.1| ribonuclease HII [Vibrio alginolyticus 40B]
 gi|91191573|gb|EAS77837.1| ribonuclease HII [Vibrio alginolyticus 12G01]
 gi|269829180|gb|EEZ83425.1| ribonuclease HII [Vibrio alginolyticus 40B]
          Length = 211

 Score =  270 bits (691), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 93/200 (46%), Positives = 120/200 (60%), Gaps = 7/200 (3%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E P FE       +    VAG+DEVGRG L G VV AA+ILDPNN   G+NDSKK++ KK
Sbjct: 13  ELPPFEYP-----QGYQLVAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLTEKK 67

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L  +I   A+  ++   S + ID+ NI +AT+ A+  AV  LQV P   LIDG   P
Sbjct: 68  RMALLPEIKEKALAWAVGRCSPEEIDQLNILQATMVAMQRAVAGLQVQPDLVLIDGNRCP 127

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           E LP  A AV+KGD     I+AASIIAKV RD+ M    K +P +GF  H GYPT  H +
Sbjct: 128 E-LPMDAQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKLHPQFGFAKHKGYPTKAHFE 186

Query: 187 VIKEKGPSCIHRLTFRPLRN 206
            I++ G    HR +F+P++ 
Sbjct: 187 AIEQHGVISEHRKSFKPVKK 206


>gi|95930749|ref|ZP_01313482.1| Ribonuclease H [Desulfuromonas acetoxidans DSM 684]
 gi|95133229|gb|EAT14895.1| Ribonuclease H [Desulfuromonas acetoxidans DSM 684]
          Length = 210

 Score =  270 bits (691), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 94/207 (45%), Positives = 134/207 (64%), Gaps = 4/207 (1%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           +F + + + P +  E  +R +    VAGIDE GRG LAGPVV AA+IL  +    G+NDS
Sbjct: 5   LFDDDLID-PTY-FERQLRRQGTTLVAGIDEAGRGPLAGPVVAAAVILPEHFDLPGLNDS 62

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           KK++ KKRE+L+  I   A+ + +  A  + ID+ NI +AT+ ++  AV  L+V P+  L
Sbjct: 63  KKLTEKKREQLFGPIRQQALAVGVGFAHAEEIDEINILQATVQSMCRAVARLKVTPQHLL 122

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           IDG + P  L      + KGDS SLS+AAAS+IAKV RDR+M++  + YPDYGF+ H GY
Sbjct: 123 IDGIT-PLPLSIDQQTIKKGDSRSLSVAAASVIAKVVRDRMMKVYARHYPDYGFEGHKGY 181

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRN 206
            +A+H+Q+I E GP  +HR TF  +R 
Sbjct: 182 GSARHRQLIAEHGPCPLHRKTFGGVRE 208


>gi|165975585|ref|YP_001651178.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|190149400|ref|YP_001967925.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|303249833|ref|ZP_07336037.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|238687515|sp|B0BS34|RNH2_ACTPJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238692371|sp|B3GZX1|RNH2_ACTP7 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|165875686|gb|ABY68734.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|189914531|gb|ACE60783.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|302651400|gb|EFL81552.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 197

 Score =  270 bits (691), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 89/187 (47%), Positives = 119/187 (63%), Gaps = 2/187 (1%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
           N   +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L E+I + A+ 
Sbjct: 9   NAHLIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLLLAEEIKAKALC 68

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            S+  A  + ID+ NI  AT+ A+  AV  L + P   L+DG  IP  LP  A AVIKGD
Sbjct: 69  WSLGRAEPEEIDRLNILHATMLAMQRAVAGLNIQPDFVLVDGNRIPT-LPMPAQAVIKGD 127

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S+   I+AASI+AKV RD+ M     +YP+YGF  H GYPT  H + +++ G +  HR +
Sbjct: 128 SLVAEISAASILAKVARDQEMAELDVQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKS 187

Query: 201 FRPLRNL 207
           F P++ +
Sbjct: 188 FAPVKKI 194


>gi|258514489|ref|YP_003190711.1| ribonuclease HII [Desulfotomaculum acetoxidans DSM 771]
 gi|257778194|gb|ACV62088.1| Ribonuclease H [Desulfotomaculum acetoxidans DSM 771]
          Length = 268

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 86/197 (43%), Positives = 128/197 (64%), Gaps = 2/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +E E+  R K    +AG+DE GRG LAGPVV AA+IL  N    G+NDSKK+    RE L
Sbjct: 62  YEQESKYRSKGFGLIAGVDEAGRGPLAGPVVAAAVILPENACLPGLNDSKKLPVSARERL 121

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+  ++  AS + I + NI +A+L A+  +V++L+V P   L+DG     +LP
Sbjct: 122 FVAIKPIALSWAVGMASVEEICELNILQASLLAMCRSVDSLKVKPDFVLVDG-PNGLNLP 180

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
              ++++KGD++S SIA+ASI+AKVTRD++M   H ++P+YGFD H GYPT +H + +  
Sbjct: 181 LPQYSLVKGDTLSASIASASILAKVTRDKIMLEYHDEFPEYGFDRHKGYPTVEHLRALTR 240

Query: 191 KGPSCIHRLTFRPLRNL 207
            GP  IHR  F+P+++ 
Sbjct: 241 YGPCRIHRRDFKPVKDF 257


>gi|254228402|ref|ZP_04921828.1| ribonuclease HII [Vibrio sp. Ex25]
 gi|262393534|ref|YP_003285388.1| ribonuclease HII [Vibrio sp. Ex25]
 gi|151938990|gb|EDN57822.1| ribonuclease HII [Vibrio sp. Ex25]
 gi|262337128|gb|ACY50923.1| ribonuclease HII [Vibrio sp. Ex25]
          Length = 211

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 92/200 (46%), Positives = 120/200 (60%), Gaps = 7/200 (3%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E P FE       +    VAG+DEVGRG L G VV AA+ILDPNN   G+NDSKK++ KK
Sbjct: 13  ELPPFEYP-----QGYQFVAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLTEKK 67

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L  +I   A+  ++   S + ID+ NI +AT+ A+  AV  L+V P   LIDG   P
Sbjct: 68  RMALLPEIKEKALAWAVGRCSPEEIDQLNILQATMVAMQRAVAGLKVQPDLVLIDGNRCP 127

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           E LP  A AV+KGD     I+AASIIAKV RD+ M    K +P +GF  H GYPT  H +
Sbjct: 128 E-LPMDAQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKLHPQFGFAKHKGYPTKAHFE 186

Query: 187 VIKEKGPSCIHRLTFRPLRN 206
            I++ G    HR +F+P++ 
Sbjct: 187 AIEQHGVISEHRKSFKPVKK 206


>gi|307067682|ref|YP_003876648.1| ribonuclease HII [Streptococcus pneumoniae AP200]
 gi|306409219|gb|ADM84646.1| Ribonuclease HII [Streptococcus pneumoniae AP200]
          Length = 259

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/199 (43%), Positives = 125/199 (62%), Gaps = 3/199 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ +  +AGIDEVG G LAGPVV AA+IL  N    G+NDSKKI  KK  E+
Sbjct: 58  LSYEKELYKQGLTLIAGIDEVGHGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DLP
Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAKH + + +
Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            G + IHR +F P+++L +
Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254


>gi|27365221|ref|NP_760749.1| ribonuclease HII [Vibrio vulnificus CMCP6]
 gi|37680727|ref|NP_935336.1| ribonuclease HII [Vibrio vulnificus YJ016]
 gi|320155606|ref|YP_004187985.1| ribonuclease HII [Vibrio vulnificus MO6-24/O]
 gi|29611847|sp|Q8DBE7|RNH2_VIBVU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|39932256|sp|Q7MIH3|RNH2_VIBVY RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|27361368|gb|AAO10276.1| Ribonuclease HII [Vibrio vulnificus CMCP6]
 gi|37199476|dbj|BAC95307.1| ribonuclease HII [Vibrio vulnificus YJ016]
 gi|319930918|gb|ADV85782.1| ribonuclease HII [Vibrio vulnificus MO6-24/O]
          Length = 207

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 93/207 (44%), Positives = 120/207 (57%), Gaps = 7/207 (3%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           M      E P FE       +    +AG+DEVGRG L G VV AA+ILDPNN   G+NDS
Sbjct: 1   MAAKETKELPPFEYP-----QGYHCIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDS 55

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           KK+S KKR  L  +I   A+  ++   S + ID+ NI +AT+ A+  AVE L V P   L
Sbjct: 56  KKLSEKKRLALLPEIQEKALAWAVGRCSPEEIDQLNILQATMVAMQRAVEGLAVKPDLVL 115

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           IDG   P  LP  + AV+KGD     I+AASIIAKV RD+ M    K+YP +GF  H GY
Sbjct: 116 IDGNRCPA-LPMDSQAVVKGDLRVAQISAASIIAKVVRDQEMEELDKQYPQFGFAQHKGY 174

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           PT  H   I++ G    HR +F+P++ 
Sbjct: 175 PTKAHFDAIEKHGVIEQHRKSFKPVKK 201


>gi|163801793|ref|ZP_02195690.1| ribonuclease HII [Vibrio sp. AND4]
 gi|159174301|gb|EDP59105.1| ribonuclease HII [Vibrio sp. AND4]
          Length = 212

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 89/187 (47%), Positives = 117/187 (62%), Gaps = 2/187 (1%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +    +AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KKR  L  +I   A+
Sbjct: 21  QGYQLIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEKAL 80

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             ++   S + ID+ NI +AT+ A+  A+E L+V P  ALIDG   PE LP  + AV+KG
Sbjct: 81  AWAVGRCSPEEIDELNILQATMVAMQRAIEGLKVQPDLALIDGNRCPE-LPMDSQAVVKG 139

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D     I+AASIIAKV RD+ M    K YP +GF  H GYPT  H + I+  G    HR 
Sbjct: 140 DLRVAEISAASIIAKVVRDQEMEELDKHYPQFGFAQHKGYPTKAHFEAIERHGVISQHRK 199

Query: 200 TFRPLRN 206
           +F+P++ 
Sbjct: 200 SFKPVKK 206


>gi|148998411|ref|ZP_01825853.1| ribonuclease HII [Streptococcus pneumoniae SP11-BS70]
 gi|147755808|gb|EDK62853.1| ribonuclease HII [Streptococcus pneumoniae SP11-BS70]
          Length = 260

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/199 (43%), Positives = 125/199 (62%), Gaps = 3/199 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ +  +AGIDEVG G LAGPVV AA+IL  N    G+NDSKKI  KK  E+
Sbjct: 58  LSYEKELYKQGLTLIAGIDEVGHGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DLP
Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAKH + + +
Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            G + IHR +F P+++L +
Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254


>gi|59712555|ref|YP_205331.1| ribonuclease HII [Vibrio fischeri ES114]
 gi|73917836|sp|Q5E3F3|RNH2_VIBF1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|59480656|gb|AAW86443.1| ribonuclease HII [Vibrio fischeri ES114]
          Length = 207

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 94/202 (46%), Positives = 119/202 (58%), Gaps = 7/202 (3%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
            E P FE             AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK++ K
Sbjct: 8   KELPPFEYPE-----GYQLFAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTDK 62

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           KRE L+ +I   A+  S+       ID+ NI +AT+ A+  A+  L + P  ALIDG  +
Sbjct: 63  KRELLFPEIQEKALAWSLGRCEAHEIDELNILQATMVAMQRAIAGLNITPDFALIDGNKV 122

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           PE LP    AV+KGD     I+AASIIAKVTRDR M    K YP YGF  H GYPT  H 
Sbjct: 123 PE-LPMAGLAVVKGDLRVQEISAASIIAKVTRDREMEELDKAYPQYGFAKHKGYPTKAHF 181

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
           + I+E G    HR +F+P++ +
Sbjct: 182 EAIEEHGVISEHRRSFKPVKRV 203


>gi|311068127|ref|YP_003973050.1| ribonuclease HII [Bacillus atrophaeus 1942]
 gi|310868644|gb|ADP32119.1| ribonuclease HII [Bacillus atrophaeus 1942]
          Length = 255

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/192 (45%), Positives = 121/192 (63%), Gaps = 3/192 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E + R K    +AGIDEVGRG LAGPVV +A+IL       G+ DSKK+S KKREE YE+
Sbjct: 63  ERLARNKGFCIIAGIDEVGRGPLAGPVVASAVILPAECEILGLTDSKKLSEKKREEYYER 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I + A+ + I       ID+ NI++A+  A+  AV  L   P   L+D  ++P D+P   
Sbjct: 123 IMNEALGVGIGIIEASVIDEMNIYEASKLAMVKAVRELSEAPDYLLVDAMTLPLDIP--Q 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++IKGD+ S+SIAA + +AKVTRDR+M    K YP YGF+ H GY T +H + +   GP
Sbjct: 181 SSIIKGDAKSVSIAAGACVAKVTRDRMMSEYAKTYPMYGFEKHKGYGTKEHLEALAAYGP 240

Query: 194 SCIHRLTFRPLR 205
           + IHR TF P++
Sbjct: 241 TDIHRRTFAPVQ 252


>gi|319947076|ref|ZP_08021310.1| ribonuclease HII [Streptococcus australis ATCC 700641]
 gi|319747124|gb|EFV99383.1| ribonuclease HII [Streptococcus australis ATCC 700641]
          Length = 256

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/198 (41%), Positives = 125/198 (63%), Gaps = 3/198 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  +  + +  +AG+DEVGRG LAGPVV AA+IL  N    G+NDSKKI   K + +
Sbjct: 58  LTYEKELYAQGIQLIAGVDEVGRGPLAGPVVAAAVILPENCKILGLNDSKKIPKSKHQAI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ +   A+ + I    +Q ID+ NI++AT  A+  A++ L   P+  LID   +  D+P
Sbjct: 118 YQAVLDQALSVGIGVKDNQVIDQVNIYEATKLAMLEAIQELDQQPQHLLIDAMKL--DVP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD++M    ++YP Y F  + GY T KH + +++
Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDQMMAAYDQEYPGYDFGQNAGYGTTKHLEGLEK 235

Query: 191 KGPSCIHRLTFRPLRNLS 208
            G + IHR +F P+++++
Sbjct: 236 HGVTPIHRRSFEPIKSMT 253


>gi|49082728|gb|AAT50764.1| PA3642 [synthetic construct]
          Length = 202

 Score =  269 bits (689), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 94/184 (51%), Positives = 119/184 (64%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L GPVV AA+ILDP+    G+NDSKK+S  +RE L+E+I   A+   I
Sbjct: 13  LVAGVDEVGRGPLCGPVVTAAVILDPSRPILGLNDSKKLSEARREALFEEIREKALAWCI 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI  AT+ A+  AVE L  IPR ALIDG   P+ L      V+KGDS  
Sbjct: 73  ARAEVEEIDRLNILHATMLAMQRAVEGLSAIPRLALIDGNRCPK-LAVPCAPVVKGDSQV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV+RDR M    + YP YG   H GYPTA H + +   GP+ IHR +F P
Sbjct: 132 PAIAAASILAKVSRDREMVELDRVYPGYGMAGHKGYPTAVHLEALSRLGPTPIHRRSFAP 191

Query: 204 LRNL 207
           +R L
Sbjct: 192 VREL 195


>gi|315613173|ref|ZP_07888083.1| ribonuclease HII [Streptococcus sanguinis ATCC 49296]
 gi|315314735|gb|EFU62777.1| ribonuclease HII [Streptococcus sanguinis ATCC 49296]
          Length = 259

 Score =  269 bits (689), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 89/197 (45%), Positives = 122/197 (61%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ +  +AG+DEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK  E+
Sbjct: 58  LSYEKELYKQGLTLIAGVDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y  +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DL 
Sbjct: 118 YHAVQDQALAIGIGIMDNQVIDQVNIYEATKLAMKEAISQLNPQPDHLLIDAMKL--DLS 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               A+IKGD+ SLSIAAASI+AKVTRD LM+    +YP Y F ++ GY TAKH + +++
Sbjct: 176 ISQTAIIKGDANSLSIAAASIVAKVTRDELMKEYDNQYPGYDFTANAGYGTAKHLEELEK 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR +F P++ L
Sbjct: 236 LGVTPIHRTSFEPVKTL 252


>gi|261253714|ref|ZP_05946287.1| ribonuclease HII [Vibrio orientalis CIP 102891]
 gi|260937105|gb|EEX93094.1| ribonuclease HII [Vibrio orientalis CIP 102891]
          Length = 205

 Score =  269 bits (689), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 90/200 (45%), Positives = 121/200 (60%), Gaps = 7/200 (3%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E P FE       +    +AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KK
Sbjct: 7   ELPPFEYP-----QGYQLIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKK 61

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L  +I   A+  S+   S + ID+ NI +AT+ A+  A++ L V P   LIDG   P
Sbjct: 62  RLALLPEIKQKALAWSVGRCSPEEIDQLNILQATMVAMQRAIDGLNVKPDLTLIDGNRCP 121

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           E L   + AV+KGD     I+AASIIAKV RD+ M    K++P++GF  H GYPT  H +
Sbjct: 122 E-LSMDSQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKQHPEFGFAKHKGYPTKAHFE 180

Query: 187 VIKEKGPSCIHRLTFRPLRN 206
            I++ G    HR +F+P++ 
Sbjct: 181 AIEQHGVIEQHRKSFKPVKR 200


>gi|260775272|ref|ZP_05884169.1| ribonuclease HII [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608453|gb|EEX34618.1| ribonuclease HII [Vibrio coralliilyticus ATCC BAA-450]
          Length = 205

 Score =  269 bits (689), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 91/201 (45%), Positives = 122/201 (60%), Gaps = 7/201 (3%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
            E P FE       +    +AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK++ K
Sbjct: 6   KELPPFEYP-----QGYRLIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLTEK 60

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           KR  L  +I   A+  S+   S + ID+ NI +AT+ A+  A+E L+V P  ALIDG  +
Sbjct: 61  KRLALLPEIKEKALAWSVGRCSPEEIDQLNILQATMVAMQRAIEGLEVAPDFALIDGNRV 120

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P+ L   A AV+KGD     I+AASIIAKV RD+ M    K +P +GF  H GYPT  H 
Sbjct: 121 PQ-LNMDAQAVVKGDMRVAEISAASIIAKVVRDQEMEELDKLHPQFGFAKHKGYPTKAHF 179

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
           + I++ G    HR +F+P++ 
Sbjct: 180 EAIEQHGVIDQHRKSFKPVKK 200


>gi|212639582|ref|YP_002316102.1| ribonuclease HII [Anoxybacillus flavithermus WK1]
 gi|226736811|sp|B7GGD5|RNH2_ANOFW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|212561062|gb|ACJ34117.1| Ribonuclease HII [Anoxybacillus flavithermus WK1]
          Length = 259

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 90/196 (45%), Positives = 124/196 (63%), Gaps = 3/196 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            + E  + +K +  +AG+DEVGRG LAGPVV AA+IL  +     ++DSKK+S  KRE+L
Sbjct: 60  LQYEQALYDKGIRYIAGVDEVGRGPLAGPVVAAAVILPKDVYLPHVDDSKKLSETKREQL 119

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+ I I   S + ID+ NI++AT  A+  AV  L + P   LID   IP  L 
Sbjct: 120 FSIIQQMALAIGIGIVSAREIDERNIYEATKKAMMQAVHALAIAPEHLLIDAMHIP--LS 177

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ S+SIAA+SIIAKVTRDR+M+   +KYP YGF+ H+GY T +H Q I+ 
Sbjct: 178 IPQTSIIKGDAHSVSIAASSIIAKVTRDRMMKQLGEKYPQYGFEKHMGYGTKEHLQAIER 237

Query: 191 KGPSCIHRLTFRPLRN 206
            G    HR +F P+R 
Sbjct: 238 YGVIEEHRRSFAPIRE 253


>gi|310764936|gb|ADP09886.1| Ribonuclease HII [Erwinia sp. Ejp617]
          Length = 207

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 87/184 (47%), Positives = 115/184 (62%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             +AG+DEVGRG L G VV AA+ILDP+    G+ DSKK+S K+R  LY++I   A+  S
Sbjct: 10  RLIAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLGDSKKLSEKRRLALYDEIKDKALSWS 69

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A  + ID+ NI  AT+ A+  AV  L + P   LIDG   P  L   + AV+KGDS+
Sbjct: 70  LGRAEPEEIDRLNILHATMLAMQRAVAGLHLTPDFVLIDGNRCPA-LAMPSRAVVKGDSL 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRDR M    ++YP YGF  H GYPTA H + +   G +  HR +F 
Sbjct: 129 VPEISAASIMAKVTRDREMCELDQQYPQYGFARHKGYPTAVHMEKLARFGVTPQHRRSFA 188

Query: 203 PLRN 206
           P+RN
Sbjct: 189 PVRN 192


>gi|146344062|ref|YP_001201918.1| putative ribonuclease HII [Pseudomonas fluorescens SBW25]
 gi|146187874|emb|CAM96203.1| putative ribonuclease HII [Pseudomonas fluorescens SBW25]
          Length = 208

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 93/197 (47%), Positives = 121/197 (61%), Gaps = 6/197 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F  E          VAG+DEVGRG L G VV AA+ILDP+    G+NDSKK+S KKR+ L
Sbjct: 4   FSFEFA----GSEVVAGVDEVGRGPLCGDVVTAAVILDPSRPIQGLNDSKKLSEKKRDLL 59

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y++I   A+  SI  AS + ID+ NI +AT+ A+  AV  L V P   LIDG   P  LP
Sbjct: 60  YDEICEKALAWSIGRASVEEIDQLNILQATMLAMQRAVYGLNVTPTLVLIDGNRCP-ILP 118

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            +A A+IKGD +   I+AAS++AKV RDR M+ A   YP YG   H GYP+ +H + +  
Sbjct: 119 MRAEAIIKGDGLIAEISAASVLAKVVRDREMQSADLLYPGYGLAGHKGYPSPEHLEALTR 178

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR TF P+R +
Sbjct: 179 LGVTPIHRKTFAPVRKI 195


>gi|160933523|ref|ZP_02080911.1| hypothetical protein CLOLEP_02369 [Clostridium leptum DSM 753]
 gi|156867400|gb|EDO60772.1| hypothetical protein CLOLEP_02369 [Clostridium leptum DSM 753]
          Length = 325

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 89/189 (47%), Positives = 113/189 (59%), Gaps = 2/189 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E     K    V G+DE GRG LAGPV  AA+IL P     G+NDSKK++ KKRE L+ 
Sbjct: 6   YEKEAISKGYANVCGVDEAGRGPLAGPVYAAAVILPPGLEIEGVNDSKKLTEKKREALFP 65

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   A+   I+SAS + IDK NI  AT  A+  AVE L V    ALIDG  +P  LP  
Sbjct: 66  EIKEKALAYCIASASEKEIDKLNILNATYLAMARAVEGLPVKADYALIDGNRMPR-LPIP 124

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              ++KGD +S+SIA ASI+AKVTRD +M    ++YP Y F  H GY T  H  +I+  G
Sbjct: 125 GETIVKGDGLSMSIACASILAKVTRDHVMMEWDQRYPQYQFAKHKGYGTKLHMDLIRRYG 184

Query: 193 PSCIHRLTF 201
           P  +HR +F
Sbjct: 185 PCELHRQSF 193


>gi|292489213|ref|YP_003532100.1| ribonuclease HII [Erwinia amylovora CFBP1430]
 gi|292898553|ref|YP_003537922.1| ribonuclease HII [Erwinia amylovora ATCC 49946]
 gi|291198401|emb|CBJ45508.1| ribonuclease HII [Erwinia amylovora ATCC 49946]
 gi|291554647|emb|CBA22333.1| Ribonuclease HII [Erwinia amylovora CFBP1430]
          Length = 211

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 87/184 (47%), Positives = 115/184 (62%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             +AG+DEVGRG L G VV AA+ILDP+    G+ DSKK+S K+R  LY++I   A+  S
Sbjct: 10  RLIAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLGDSKKLSEKRRLALYDEIKDKALSWS 69

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A  + ID+ NI  AT+ A+  AV  L + P   LIDG   P  L   + AV+KGDS+
Sbjct: 70  LGRAEPEEIDRLNILHATMLAMQRAVAGLHLTPDFVLIDGNRCPA-LAMPSRAVVKGDSL 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I AASI+AKVTRDR M    ++YP YGF  H GYPTA H + + + G +  HR +F 
Sbjct: 129 VQEIGAASIMAKVTRDREMCELDQQYPQYGFARHKGYPTALHMEKLAQFGVTPQHRRSFA 188

Query: 203 PLRN 206
           P+RN
Sbjct: 189 PVRN 192


>gi|209695837|ref|YP_002263767.1| ribonuclease HII [Aliivibrio salmonicida LFI1238]
 gi|238056773|sp|B6EJW6|RNH2_ALISL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|208009790|emb|CAQ80097.1| ribonuclease HII [Aliivibrio salmonicida LFI1238]
          Length = 207

 Score =  268 bits (687), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 92/202 (45%), Positives = 122/202 (60%), Gaps = 7/202 (3%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
            E P FE       +     AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK++ K
Sbjct: 8   KELPPFEYP-----QGYQLFAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTEK 62

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           KR+ L+ +I   A+  S+       ID+ NI +AT+ A+  A+  L+V P  ALIDG  +
Sbjct: 63  KRDLLFPEIQEKALAWSLGRCEAHEIDELNILQATMVAMQRAIAGLKVTPDFALIDGNKV 122

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           PE LP    AV+KGD     I+AASI+AKVTRDR M +  K++P YGF  H GYPT  H 
Sbjct: 123 PE-LPMAGLAVVKGDLRVQEISAASILAKVTRDREMEVLDKEFPQYGFAKHKGYPTKAHF 181

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
             I+E G    HR +F+P++ +
Sbjct: 182 AAIEEHGVISEHRRSFKPVKRV 203


>gi|52424478|ref|YP_087615.1| ribonuclease HII [Mannheimia succiniciproducens MBEL55E]
 gi|81387520|sp|Q65VI0|RNH2_MANSM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|52306530|gb|AAU37030.1| RnhB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 198

 Score =  268 bits (687), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 91/188 (48%), Positives = 120/188 (63%), Gaps = 2/188 (1%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +    +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKRE+L E+I   A+
Sbjct: 8   QGFELIAGVDEVGRGPLVGAVVTAAVILDPNNPIDGLTDSKKLSEKKREKLAEEIKQKAL 67

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             ++  A  + ID  NI +AT+ A+  A++NL++ P   LIDG  IP+ L   A AV+KG
Sbjct: 68  AWALGRAEPEEIDALNILQATMLAMQRAIKNLKIQPHFVLIDGNRIPQ-LAIPAQAVVKG 126

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DS+   I+AASIIAKV+RD  M +  K+YP Y F  H GYPT  H   + E G    HR 
Sbjct: 127 DSLVAEISAASIIAKVSRDHEMEVLDKQYPQYEFAKHKGYPTKVHLAKLAEFGVLPQHRR 186

Query: 200 TFRPLRNL 207
           +F P+R L
Sbjct: 187 SFSPVRKL 194


>gi|268590518|ref|ZP_06124739.1| ribonuclease HII [Providencia rettgeri DSM 1131]
 gi|291314104|gb|EFE54557.1| ribonuclease HII [Providencia rettgeri DSM 1131]
          Length = 197

 Score =  268 bits (687), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 91/183 (49%), Positives = 118/183 (64%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK++ KKRE+L+++I   A+   I
Sbjct: 10  LIAGVDEVGRGPLVGAVVTAAVILDPNNPIIGLADSKKLTEKKREKLFDEIQEKALCWCI 69

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID  NI  AT+ A+  AV  L +IP   LIDG   PE LP  + AVIKGDS+ 
Sbjct: 70  GRAEPEEIDNINILHATMLAMQRAVAGLSIIPEYVLIDGNRCPE-LPMPSQAVIKGDSLV 128

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKV RDR M    K +P+YGF  H GYPTA H + + + G +  HR +F P
Sbjct: 129 QEISAASILAKVIRDREMVELDKAFPEYGFAKHKGYPTAYHLEKLAQYGATEFHRKSFAP 188

Query: 204 LRN 206
           +R 
Sbjct: 189 VRR 191


>gi|282889844|ref|ZP_06298383.1| hypothetical protein pah_c004o257 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500418|gb|EFB42698.1| hypothetical protein pah_c004o257 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 232

 Score =  268 bits (687), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 87/196 (44%), Positives = 121/196 (61%), Gaps = 3/196 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E   R +    VAG+DE GRG LAGPVV AA IL P     G+NDSKK++ +KR +L++
Sbjct: 28  YEEKARRQGYKLVAGVDEAGRGPLAGPVVAAACILPPRFRVPGVNDSKKLTPQKRAQLFQ 87

Query: 74  KITSS--AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           +IT+    I  +   + + ID  NI +AT+ A+  AV  L   P++ L+DG  +P  +  
Sbjct: 88  EITTHPKVIYGVGIVATEIIDTINILQATIQAMLDAVNQLSSQPQALLVDGLQLPHPV-I 146

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +I GDS+SL IAAASIIAK TRDRLM    +++P YGF  H GY T +H   ++E 
Sbjct: 147 PCQKLIHGDSLSLCIAAASIIAKETRDRLMVELDQQWPAYGFAQHKGYGTQQHLDALREH 206

Query: 192 GPSCIHRLTFRPLRNL 207
           GP  IHR TF P++++
Sbjct: 207 GPCPIHRKTFEPIKSM 222


>gi|306829522|ref|ZP_07462712.1| ribonuclease HII [Streptococcus mitis ATCC 6249]
 gi|304428608|gb|EFM31698.1| ribonuclease HII [Streptococcus mitis ATCC 6249]
          Length = 259

 Score =  268 bits (687), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 89/197 (45%), Positives = 123/197 (62%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ +  +AG+DEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK  E+
Sbjct: 58  LSYEKELYKRGLTLIAGVDEVGRGPLAGPVVAAAVILPKNCKIRGLNDSKKIPKKKHLEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DL 
Sbjct: 118 YQAVQDQALAIGIGIMDNQVIDQVNIYEATKLAMKEAISQLTPQPEHLLIDAMKL--DLS 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               A+IKGD+ SLSIAAASI+AKVTRD LM    ++YP Y F ++ GY TAKH + +++
Sbjct: 176 IYQTAIIKGDANSLSIAAASIVAKVTRDELMMEYDQQYPGYDFTANAGYGTAKHLEGLEK 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR +F P++ L
Sbjct: 236 LGVTPIHRTSFEPVKTL 252


>gi|327489685|gb|EGF21476.1| ribonuclease HII [Streptococcus sanguinis SK1058]
          Length = 254

 Score =  268 bits (687), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 86/197 (43%), Positives = 121/197 (61%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +     +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  KK +E+
Sbjct: 58  LRYEKELYQAGYRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ +   A+ + I    ++ ID+ NI++AT  A+  A+  L + P   LID   +  D+ 
Sbjct: 118 YQAVLDKALAVGIGLIDNEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKL--DID 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD+LM    K+YP Y F  + GY T  H Q ++ 
Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSHLQGLER 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR TF P++++
Sbjct: 236 HGVTPIHRKTFEPVKSM 252


>gi|260913166|ref|ZP_05919648.1| ribonuclease HII [Pasteurella dagmatis ATCC 43325]
 gi|260632753|gb|EEX50922.1| ribonuclease HII [Pasteurella dagmatis ATCC 43325]
          Length = 197

 Score =  268 bits (686), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 91/184 (49%), Positives = 118/184 (64%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KKR  L E+I   A+  S+
Sbjct: 11  LIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLNDSKKLSEKKRLALAEEIKQKALAWSL 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID+ NI  AT+ A+  AVENL++ P   L+DG  +P D+   A A++KGDS+ 
Sbjct: 71  GRAEPEEIDELNILHATMLAMKRAVENLKIQPHLVLVDGNRVP-DVVMPAQAIVKGDSLV 129

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKV RD  M    K+YP Y F  H GYPT  H + + E GP   HR +F P
Sbjct: 130 AEISAASILAKVARDHEMEELDKQYPQYAFAKHKGYPTKLHLEKLAEFGPLPEHRRSFSP 189

Query: 204 LRNL 207
           +R L
Sbjct: 190 VRKL 193


>gi|322375250|ref|ZP_08049763.1| ribonuclease HII [Streptococcus sp. C300]
 gi|321279513|gb|EFX56553.1| ribonuclease HII [Streptococcus sp. C300]
          Length = 259

 Score =  268 bits (686), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 89/197 (45%), Positives = 123/197 (62%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ +  +AG+DEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK  E+
Sbjct: 58  LSYEKELYKQGVALIAGVDEVGRGPLAGPVVAAAVILPKNCKINGLNDSKKIPKKKHLEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y  +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DL 
Sbjct: 118 YHAVQDQALAIGIGIMDNQVIDQVNIYEATKLAMKEAISQLSPQPDHLLIDAMKL--DLS 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               A+IKGD+ SLSIAAASI+AKVTRD LM+   ++YP Y F ++ GY TAKH + +++
Sbjct: 176 ISQTAIIKGDANSLSIAAASIVAKVTRDELMKEYDQQYPGYDFTANAGYGTAKHLEGLEK 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR +F P++ L
Sbjct: 236 LGVTPIHRTSFEPVKTL 252


>gi|329767413|ref|ZP_08258938.1| hypothetical protein HMPREF0428_00635 [Gemella haemolysans M341]
 gi|328836102|gb|EGF85793.1| hypothetical protein HMPREF0428_00635 [Gemella haemolysans M341]
          Length = 258

 Score =  268 bits (686), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 93/208 (44%), Positives = 131/208 (62%), Gaps = 3/208 (1%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           +F     E+  F  E          + GIDEVGRG LAGPVV AA+IL  ++   G+NDS
Sbjct: 46  LFYKKEYEKKSF-YENKCYNNGCKYICGIDEVGRGPLAGPVVAAAVILKKDSYFEGLNDS 104

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           KK+S KKREE+YE+I + A+  +I    +  I+K+NI+ A   A+  AVE L+V P   L
Sbjct: 105 KKLSAKKREEIYEQIKNEAVAYAICEVDNIEIEKYNIYNAARIAMQRAVEKLEVKPDFLL 164

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           ID     E+ P   F+++KGD  S+SIAAAS++AKV RD LM+   KKYP+Y F+++ GY
Sbjct: 165 IDAMPF-ENYPIPNFSMVKGDEKSVSIAAASVMAKVYRDNLMKEYAKKYPNYDFENNAGY 223

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
            T KH + +KE G + IHR  F P++++
Sbjct: 224 GTKKHLEGLKEYGVTPIHRRDFEPIKSM 251


>gi|197286117|ref|YP_002151989.1| ribonuclease HII [Proteus mirabilis HI4320]
 gi|227357236|ref|ZP_03841593.1| ribonuclease HII [Proteus mirabilis ATCC 29906]
 gi|238690094|sp|B4F256|RNH2_PROMH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|194683604|emb|CAR44495.1| ribonuclease HII [Proteus mirabilis HI4320]
 gi|227162499|gb|EEI47488.1| ribonuclease HII [Proteus mirabilis ATCC 29906]
          Length = 196

 Score =  268 bits (686), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 90/183 (49%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP N   G+ DSKK++ KKR  LY++I   A+  +I
Sbjct: 10  LIAGVDEVGRGPLVGAVVTAAVILDPANPIQGLMDSKKLTEKKRNALYDEIKEKALCWAI 69

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + IDK NI  AT+ A+  AV  L + P   L+DG   P +LP  + AVIKGDS+ 
Sbjct: 70  GRAEPEEIDKLNILWATMKAMERAVAGLSITPDMVLVDGNRCP-NLPMASQAVIKGDSLV 128

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M    K YPDYGF  H GYPTA H + +   G +  HR +F P
Sbjct: 129 QEISAASILAKVTRDREMEQLDKLYPDYGFAKHKGYPTAFHMEKLASLGATPYHRKSFAP 188

Query: 204 LRN 206
           ++ 
Sbjct: 189 VKR 191


>gi|301630622|ref|XP_002944415.1| PREDICTED: lipid-A-disaccharide synthase-like [Xenopus (Silurana)
           tropicalis]
          Length = 550

 Score =  268 bits (686), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 85/183 (46%), Positives = 118/183 (64%), Gaps = 2/183 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82
             +AG+DE GRG LAGPVV AA+ILD      G+ DSKK+S  +RE L+++I + A+  S
Sbjct: 369 GLIAGVDEAGRGPLAGPVVAAAVILDAQRPIAGLADSKKLSPARREALFDEIHAHALCCS 428

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+ AS + ID+ NI +ATL A+  AV+ L++ P   LIDG  +P  L   A A++KGD+ 
Sbjct: 429 IAEASVEEIDRLNILQATLLAMRRAVQGLRLQPAMVLIDGNRLPV-LDVPAEAIVKGDAR 487

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +I+AASI+AKV RDR     H++YP YGF +H GY TA H   ++  G    HR TF 
Sbjct: 488 VPAISAASILAKVQRDRWCMQLHERYPQYGFATHKGYGTAAHIAALRAHGACPEHRRTFA 547

Query: 203 PLR 205
           P++
Sbjct: 548 PVK 550


>gi|307249333|ref|ZP_07531327.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|307251656|ref|ZP_07533561.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307256154|ref|ZP_07537941.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|307262716|ref|ZP_07544344.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|306858627|gb|EFM90689.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306860853|gb|EFM92861.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306865335|gb|EFM97231.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306871971|gb|EFN03687.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 186

 Score =  268 bits (686), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 88/183 (48%), Positives = 118/183 (64%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L E+I + A+  S+ 
Sbjct: 2   IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLLLAEEIKAKALCWSLG 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L + P   L+DG  IP  LP  A AVIKGDS+  
Sbjct: 62  RAEPEEIDRLNILHATMLAMQRAVAGLNIQPDFVLVDGNRIPT-LPMPAQAVIKGDSLVA 120

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M     +YP+YGF  H GYPT  H + +++ G +  HR +F P+
Sbjct: 121 EISAASILAKVARDQEMAELDVQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKSFAPV 180

Query: 205 RNL 207
           + +
Sbjct: 181 KKI 183


>gi|116617876|ref|YP_818247.1| RNase HII [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|122271923|sp|Q03Y48|RNH2_LEUMM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|116096723|gb|ABJ61874.1| RNase HII [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 253

 Score =  268 bits (686), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 92/198 (46%), Positives = 123/198 (62%), Gaps = 3/198 (1%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F++E     +    +AG+DEVGRG LAGPVV AA+IL  +     + DSK++S KKR+E
Sbjct: 57  RFDIERQYWMQGYDLIAGVDEVGRGPLAGPVVAAAVILPHDFDVLDVIDSKQLSAKKRDE 116

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY+KI   AI I +       ID+ NI++A   A+  AV  L  IP + LID   +  DL
Sbjct: 117 LYDKIIEKAISIGVGRVEASIIDEINIYEAARVAMTEAVNQLAPIPEALLIDAMRLDLDL 176

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +IKGD+ S SI AASIIAKVTRDRLM     KYP YGF+ + GY T +H + IK
Sbjct: 177 P--QEFLIKGDARSNSIGAASIIAKVTRDRLMASYGLKYPGYGFEKNAGYGTKEHLEGIK 234

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + G + IHR TF P++++
Sbjct: 235 KIGITPIHRKTFAPIKDI 252


>gi|262404580|ref|ZP_06081135.1| ribonuclease HII [Vibrio sp. RC586]
 gi|262349612|gb|EEY98750.1| ribonuclease HII [Vibrio sp. RC586]
          Length = 206

 Score =  268 bits (686), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 93/202 (46%), Positives = 122/202 (60%), Gaps = 2/202 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           + ++P  EL A         +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S 
Sbjct: 1   MAKKPSIELPAFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSE 60

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KKR  L+ +I   A+  S+   S Q ID+ NI +AT+ A+  AV  L V P   L+DG  
Sbjct: 61  KKRLALFPEIQEKALAWSVGRCSPQEIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNK 120

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +P+ LP +A AV+KGD     I+AASIIAKV RD  M    K+YP +GF  H GYPTA H
Sbjct: 121 VPK-LPMEAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAVH 179

Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206
              I++ G    HR +F P++ 
Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201


>gi|312173373|emb|CBX81627.1| ribonuclease HII [Erwinia amylovora ATCC BAA-2158]
          Length = 207

 Score =  268 bits (686), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 87/184 (47%), Positives = 115/184 (62%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             +AG+DEVGRG L G VV AA+ILDP+    G+ DSKK+S K+R  LY++I   A+  S
Sbjct: 10  RLIAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLGDSKKLSEKRRLALYDEIKDKALSWS 69

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A  + ID+ NI  AT+ A+  AV  L + P   LIDG   P  L   + AV+KGDS+
Sbjct: 70  LGRAEPEEIDRLNILHATMLAMQRAVAGLHLTPDFVLIDGNRCPA-LAMPSRAVVKGDSL 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I AASI+AKVTRDR M    ++YP YGF  H GYPTA H + + + G +  HR +F 
Sbjct: 129 VQEIGAASIMAKVTRDREMCELDQQYPQYGFARHKGYPTAVHMEKLAQFGVTPQHRRSFA 188

Query: 203 PLRN 206
           P+RN
Sbjct: 189 PVRN 192


>gi|332361192|gb|EGJ38996.1| ribonuclease HII [Streptococcus sanguinis SK1056]
          Length = 254

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 86/197 (43%), Positives = 121/197 (61%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +     +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  KK +E+
Sbjct: 58  LRYEKELYQAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ +   A+ + I   + + ID+ NI++AT  A+  A+  L + P   LID   +  D+ 
Sbjct: 118 YQAVLDKALAVGIGLMNSEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKL--DID 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD+LM    K+YP Y F  + GY T  H Q ++ 
Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSHLQGLER 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR TF P++++
Sbjct: 236 HGVTPIHRKTFEPVKSM 252


>gi|332366882|gb|EGJ44623.1| ribonuclease HII [Streptococcus sanguinis SK1059]
          Length = 254

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 86/197 (43%), Positives = 121/197 (61%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +     +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  KK +E+
Sbjct: 58  LRYEKELYKAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHDEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ +   A+ + I    ++ ID+ NI++AT  A+  A+  L + P   LID   +  D+ 
Sbjct: 118 YQAVLDKALAVGIGLIDNEIIDRVNIYEATKLAMKEALSKLCLKPDYLLIDAMKL--DVE 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD+LM    K+YP Y F  + GY T  H Q ++ 
Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSHLQGLER 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR TF P++++
Sbjct: 236 HGVTPIHRKTFEPVKSM 252


>gi|332522627|ref|ZP_08398879.1| ribonuclease HII [Streptococcus porcinus str. Jelinkova 176]
 gi|332313891|gb|EGJ26876.1| ribonuclease HII [Streptococcus porcinus str. Jelinkova 176]
          Length = 258

 Score =  268 bits (685), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 88/202 (43%), Positives = 123/202 (60%), Gaps = 6/202 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  V  +    +AGIDEVGRG LAGPVV A +IL  N    G+NDSKKI   K   L
Sbjct: 59  LRYERDVYGQGYHYIAGIDEVGRGPLAGPVVAACVILPKNCKIKGLNDSKKIPKSKHNIL 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127
           +E+I + A+ I I    ++ ID  NI++AT  A+  A+ +L+   VIP   LID  ++  
Sbjct: 119 FEQIKNQAVGIGIGIVDNKMIDSVNIYQATKLAMLEAINDLKKVEVIPDYLLIDAMTL-- 176

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           D+     ++IKGD+ SLSIAAASI+AKVTRD+LM    + YP Y F  + GY T KH   
Sbjct: 177 DISIPQMSLIKGDANSLSIAAASIVAKVTRDQLMMSYDQNYPGYDFAQNAGYGTKKHLNG 236

Query: 188 IKEKGPSCIHRLTFRPLRNLSV 209
           +K+ G + IHR +F P++++ +
Sbjct: 237 LKKYGVTPIHRKSFEPIKSMLL 258


>gi|218710304|ref|YP_002417925.1| ribonuclease HII [Vibrio splendidus LGP32]
 gi|254808007|sp|B7VIQ4|RNH2_VIBSL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|218323323|emb|CAV19500.1| Ribonuclease HII [Vibrio splendidus LGP32]
          Length = 206

 Score =  268 bits (685), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 92/208 (44%), Positives = 123/208 (59%), Gaps = 7/208 (3%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           M      E P FE       +     AG+DEVGRG L G VV AA+ILDPNN   G+NDS
Sbjct: 1   MAVKEKKEFPPFEYP-----QGYQLFAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDS 55

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           KK+S KKR  L  +I   A+  S+   S Q ID+ NI +AT+ A+  A+  L V P  AL
Sbjct: 56  KKLSEKKRLALLPEIKEKALAWSVGRCSPQEIDELNILQATMVAMQRAIAGLSVQPDMAL 115

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           IDG  +PE LP    A++KGD     I+AASIIAKV RD+ M    K +P++GF  H GY
Sbjct: 116 IDGNRVPE-LPMAGLAIVKGDLRVAEISAASIIAKVVRDQEMEELDKLHPEFGFAKHKGY 174

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           PT  H + I++ G +  +R +F+P++ +
Sbjct: 175 PTKAHFEAIEKHGVTEHYRKSFKPVKRI 202


>gi|304396658|ref|ZP_07378539.1| Ribonuclease H [Pantoea sp. aB]
 gi|304356167|gb|EFM20533.1| Ribonuclease H [Pantoea sp. aB]
          Length = 208

 Score =  268 bits (685), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 88/184 (47%), Positives = 115/184 (62%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             +AG+DEVGRG L G VV AA+ILDP N   G+ DSKK+S K+R  LY++I   A+  S
Sbjct: 10  RLIAGVDEVGRGPLVGAVVTAAVILDPANPITGLADSKKLSEKRRLALYDEIKEKALAWS 69

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A  + ID+ NI  AT+ A+  AV  L + P   LIDG   P  LP  + AV+KGDS+
Sbjct: 70  LGRAEPEEIDQLNILHATMLAMQRAVAGLSIQPDYVLIDGNRCPA-LPMPSQAVVKGDSL 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASIIAKV+RDR M      +P YGF  H GYPTA H + + + G +  HR +F 
Sbjct: 129 VAEISAASIIAKVSRDREMAELDLLFPQYGFAQHKGYPTALHMEKLTQYGATPHHRRSFA 188

Query: 203 PLRN 206
           P+RN
Sbjct: 189 PVRN 192


>gi|86146875|ref|ZP_01065194.1| ribonuclease HII [Vibrio sp. MED222]
 gi|85835327|gb|EAQ53466.1| ribonuclease HII [Vibrio sp. MED222]
          Length = 206

 Score =  268 bits (685), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 92/208 (44%), Positives = 123/208 (59%), Gaps = 7/208 (3%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           M      E P FE       +     AG+DEVGRG L G VV AA+ILDPNN   G+NDS
Sbjct: 1   MAVKEKKEFPPFEYP-----QGYQLFAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDS 55

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           KK+S KKR  L  +I   A+  S+   S Q ID+ NI +AT+ A+  A+  L V P  AL
Sbjct: 56  KKLSEKKRLALLPEIKEKALAWSVGRCSPQEIDELNILQATMVAMQRAIAGLSVQPDIAL 115

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           IDG  +PE LP    A++KGD     I+AASIIAKV RD+ M    K +P++GF  H GY
Sbjct: 116 IDGNRVPE-LPMAGLAIVKGDLRVAEISAASIIAKVVRDQEMEELDKLHPEFGFAKHKGY 174

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           PT  H + I++ G +  +R +F+P++ +
Sbjct: 175 PTKAHFEAIEKHGVTEHYRKSFKPVKRI 202


>gi|187735061|ref|YP_001877173.1| Ribonuclease H [Akkermansia muciniphila ATCC BAA-835]
 gi|187425113|gb|ACD04392.1| Ribonuclease H [Akkermansia muciniphila ATCC BAA-835]
          Length = 214

 Score =  268 bits (685), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 86/203 (42%), Positives = 117/203 (57%), Gaps = 4/203 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKR 68
           P    E   R      VAG+DE GRG LAGPVV  A+IL        G+NDSK+++  KR
Sbjct: 7   PDMSFEMEARASGFLCVAGVDEAGRGPLAGPVVAGAVILPVLAEELTGLNDSKQLTAAKR 66

Query: 69  EELYEKI--TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           E L+  +     A+ S+  AS + ID+ NI +AT  A+  AVE L +     L+DG  + 
Sbjct: 67  ERLFLALLECEQAVCSVGVASVEEIDRFNILRATHLAMARAVEGLALRADFCLVDGLPV- 125

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           + LP    A++KGD  SLSIAAAS++AKVTRDR+M  A   YP YGF  H GY T  H +
Sbjct: 126 KGLPVPHRAIVKGDGRSLSIAAASVLAKVTRDRMMMEADASYPQYGFAKHKGYGTKAHME 185

Query: 187 VIKEKGPSCIHRLTFRPLRNLSV 209
            ++  GP  +HR +F P+  + +
Sbjct: 186 ALRRHGPCPLHRRSFAPVSQMEL 208


>gi|330719081|ref|ZP_08313681.1| ribonuclease HII [Leuconostoc fallax KCTC 3537]
          Length = 254

 Score =  268 bits (685), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 90/200 (45%), Positives = 122/200 (61%), Gaps = 3/200 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F++E     K +  VAGIDEVGRG LAGPVV AA+IL  +     + DSK++S  KR
Sbjct: 56  QKRFDIEKQYWAKGLVNVAGIDEVGRGPLAGPVVSAAVILPHDFNQVDVIDSKQLSADKR 115

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           + LY+ I + A+ I I     + ID  NI++A   A+  AV+ L +     LID   +  
Sbjct: 116 DRLYDVIMAEALAIGIGQVDAETIDAINIYQAARLAMTQAVQQLSIPVDGLLIDAMQLDL 175

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           DLP    ++IKGD+ S SI AASIIAKVTRDRLM    K+YP YGF  + GY T +H   
Sbjct: 176 DLP--QESLIKGDARSNSIGAASIIAKVTRDRLMAEYGKRYPAYGFQHNAGYGTKEHLVA 233

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           I+E G + +HR TF P++N+
Sbjct: 234 IEEYGITPLHRKTFAPIKNM 253


>gi|319403915|emb|CBI77503.1| Ribonuclease HII [Bartonella rochalimae ATCC BAA-1498]
          Length = 223

 Score =  267 bits (684), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 107/208 (51%), Positives = 144/208 (69%), Gaps = 4/208 (1%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           MF   +P +P+F  E  +++K  + +AG+DEVGRG LAGPVV AA+ILD + IP G+NDS
Sbjct: 12  MF--DVPFQPNFSYELDLQKKGFFYIAGVDEVGRGPLAGPVVTAAVILDKDRIPEGLNDS 69

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           KK+S ++R  LY +I  +A+ IS++S   + IDK NI KATL+A+ H +  L +    AL
Sbjct: 70  KKLSSQQRNRLYYEILRNALAISVASLCARTIDKSNIRKATLEAMRHCITGLAISAHYAL 129

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           IDGR IP DLPC A A+IKGD  S+SIAAASIIAKV RDR+M+ A + Y +YG + HVGY
Sbjct: 130 IDGRDIPFDLPCPAVALIKGDQSSVSIAAASIIAKVIRDRMMQYAGRIYQNYGLEKHVGY 189

Query: 180 PTAKHQQVIKEKGPS-CIHRLTFRPLRN 206
            T  H+  I + GP   +HR +F PL+ 
Sbjct: 190 GTVAHRAAIDKYGPIVRLHRYSFSPLKE 217


>gi|330445159|ref|ZP_08308811.1| ribonuclease HII family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489350|dbj|GAA03308.1| ribonuclease HII family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 203

 Score =  267 bits (684), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 90/196 (45%), Positives = 120/196 (61%), Gaps = 3/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E  V  +    +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK++ KKR  L+
Sbjct: 6   EFEPFVYPQ-ANCIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTEKKRNLLF 64

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           ++I   A+  S+       ID+ NI +AT+ A+  AV  L + P   LIDG  +PE LP 
Sbjct: 65  DEIKEKALSWSLGRCEADEIDELNILQATMVAMQRAVAGLHIQPDFVLIDGNKVPE-LPM 123

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
            A AV+KGD     I+AASIIAKVTRDR M     +YP YGF  H GYPT  H + +++ 
Sbjct: 124 AAQAVVKGDLRVAEISAASIIAKVTRDREMEALDAEYPQYGFAKHKGYPTKAHFEALEQH 183

Query: 192 GPSCIHRLTFRPLRNL 207
           G    HR +F+P++ +
Sbjct: 184 GAIEQHRKSFKPVKRI 199


>gi|261211364|ref|ZP_05925652.1| ribonuclease HII [Vibrio sp. RC341]
 gi|260839319|gb|EEX65945.1| ribonuclease HII [Vibrio sp. RC341]
          Length = 206

 Score =  267 bits (684), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 121/202 (59%), Gaps = 2/202 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           + ++P  EL           +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S 
Sbjct: 1   MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIEGLNDSKKLSE 60

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KKR  L+ +I   A+  ++   S Q ID+ NI +AT+ A+  AV  L V P   L+DG  
Sbjct: 61  KKRLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNK 120

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +P+ LP +A AV+KGD     I+AASIIAKV RD  M    K+YP +GF  H GYPTA H
Sbjct: 121 VPQ-LPMEAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAVH 179

Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206
              I++ G    HR +F P++ 
Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201


>gi|229541107|ref|ZP_04430167.1| Ribonuclease H [Bacillus coagulans 36D1]
 gi|229325527|gb|EEN91202.1| Ribonuclease H [Bacillus coagulans 36D1]
          Length = 255

 Score =  267 bits (684), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 84/194 (43%), Positives = 120/194 (61%), Gaps = 2/194 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  +R      +AGIDE GRG LAGPVV AA+IL  +    G+NDSK++S K+RE  +
Sbjct: 58  RFEDALRSHGCRLIAGIDEAGRGPLAGPVVAAAVILPEDFYLPGLNDSKQLSEKQREAFF 117

Query: 73  EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            +I    ++ +  AS + ID+ NI++A   A+  A+ +L   P   LID   IP   P  
Sbjct: 118 ARIQEETLVGVGFASAEEIDRMNIYEAAKKAMLAALGHLPAAPDHLLIDAMEIPASYP-- 175

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             +++KGD+ S+SIAAAS++AKVTRDR M+   +KYP YGF  H GY T KH + + + G
Sbjct: 176 QTSIVKGDAKSISIAAASVVAKVTRDRYMQEMDEKYPGYGFAIHKGYGTKKHLEALMKLG 235

Query: 193 PSCIHRLTFRPLRN 206
           P  IHR +F P+++
Sbjct: 236 PCPIHRKSFAPIKD 249


>gi|254511405|ref|ZP_05123472.1| ribonuclease HII [Rhodobacteraceae bacterium KLH11]
 gi|221535116|gb|EEE38104.1| ribonuclease HII [Rhodobacteraceae bacterium KLH11]
          Length = 205

 Score =  267 bits (684), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 87/198 (43%), Positives = 133/198 (67%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P++ELE  +  +    VAG+DEVGRG LAGPVV AA+IL+P++ P G+NDSKK++ K+R 
Sbjct: 4   PNYELEQALLARGYVRVAGVDEVGRGPLAGPVVAAAVILNPDDFPEGLNDSKKLTAKRRG 63

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L   + + A ++++ AS   ID+HNI +A+  A+  AV  L   P   LIDG  IP  L
Sbjct: 64  ALDLALRAQASVAVAQASVAEIDEHNILRASHLAMVRAVAALNPAPDFLLIDGNMIPRGL 123

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              + AV++GD+ S+SIA ASI+AK  RDRLM    +++P YG++++ GYPT +H++ ++
Sbjct: 124 KIPSQAVVRGDARSVSIAGASIVAKNWRDRLMVDLAQQHPGYGWEANAGYPTKQHREALR 183

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G +  HR +F+P+ N+
Sbjct: 184 NLGVTPHHRRSFKPVHNI 201


>gi|291616360|ref|YP_003519102.1| RnhB [Pantoea ananatis LMG 20103]
 gi|291151390|gb|ADD75974.1| RnhB [Pantoea ananatis LMG 20103]
          Length = 215

 Score =  267 bits (684), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 88/184 (47%), Positives = 113/184 (61%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             +AG+DEVGRG L G VV AA+ILDP N   G+ DSKK+S K+R  L+++I   A+  S
Sbjct: 17  GCIAGVDEVGRGPLVGAVVTAAVILDPANPVPGLADSKKLSEKRRLALFDQIKEKALAWS 76

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A    ID  NI  AT+ A+  AV  L + P   LIDG   P  LP  + AV+KGDS+
Sbjct: 77  LGRAEPDEIDNLNILHATMLAMQRAVAGLSITPDFVLIDGNRCPA-LPMPSLAVVKGDSL 135

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASIIAKVTRDR M      +P YGF  H GYPTA H + + + G +  HR +F 
Sbjct: 136 VAEISAASIIAKVTRDREMAELDLLFPQYGFAQHKGYPTALHMEKLTQYGATPHHRRSFA 195

Query: 203 PLRN 206
           P+RN
Sbjct: 196 PVRN 199


>gi|269101953|ref|ZP_06154650.1| ribonuclease HII [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161851|gb|EEZ40347.1| ribonuclease HII [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 201

 Score =  267 bits (684), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 87/184 (47%), Positives = 114/184 (61%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L+++I   A+  S+
Sbjct: 15  LIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLSEKKRNALFDEIKEKALAWSL 74

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
                  ID+ NI +AT+ A+  AV  L + P   LIDG   PE LP  A AV+KGD   
Sbjct: 75  GRCEADEIDELNILQATMVAMQRAVAGLNITPDFVLIDGNKTPE-LPMAAQAVVKGDLRV 133

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M     +YP +GF  H GYPT  H   ++E G    HR +F+P
Sbjct: 134 AEISAASILAKVTRDREMDELDAQYPQFGFAKHKGYPTKAHFAALEEHGVIEQHRKSFKP 193

Query: 204 LRNL 207
           ++ +
Sbjct: 194 VKRI 197


>gi|150395676|ref|YP_001326143.1| ribonuclease HII [Sinorhizobium medicae WSM419]
 gi|166226656|sp|A6U6M8|RNH2_SINMW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|150027191|gb|ABR59308.1| Ribonuclease H [Sinorhizobium medicae WSM419]
          Length = 216

 Score =  267 bits (684), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 105/201 (52%), Positives = 139/201 (69%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           P  P F  E   +   +WPVAG DE GRG LAGPVV AA+IL+P+ IP G+NDSK ++ +
Sbjct: 16  PPVPDFAFERAAQRDGLWPVAGADEAGRGPLAGPVVAAAVILNPDAIPTGLNDSKLLTAE 75

Query: 67  KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           +RE L+E+I ++A +SI+S+S   ID  +I KA+LDA+  AV  L+V  R  L+DGR +P
Sbjct: 76  QRETLFEEILATATVSIASSSSARIDTTDILKASLDAMRRAVHGLEVAARIVLVDGRDVP 135

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             L C A A++KGDS S+SIAAASI+AKVTRDR+M  A   +P YGF  H GY T KH+ 
Sbjct: 136 PGLSCHAKAIVKGDSRSVSIAAASIVAKVTRDRMMARADATFPLYGFAHHAGYATVKHRT 195

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I+  GP  +HR++FRP R L
Sbjct: 196 AIESHGPCSLHRMSFRPFRQL 216


>gi|304393450|ref|ZP_07375378.1| ribonuclease HII [Ahrensia sp. R2A130]
 gi|303294457|gb|EFL88829.1| ribonuclease HII [Ahrensia sp. R2A130]
          Length = 208

 Score =  267 bits (684), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 98/198 (49%), Positives = 136/198 (68%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +P F LE +   K +  V G+DE GRG LAGPV+ AA+ILDP+NIP G+NDSK ++ K+R
Sbjct: 5   QPDFTLETLALSKGIKNVCGVDEAGRGPLAGPVIAAAVILDPDNIPSGLNDSKALTEKRR 64

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            EL++ I +++ ++ ++ +   ID  NI  A+L A+  +V  L V    ALIDG ++P +
Sbjct: 65  SELFDAILATSQVAFATVAAGRIDAMNIRAASLYAMEQSVRALPVCANHALIDGNALPPN 124

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           +PC A A++KGD+ SLSIAAASIIAKV RDR+M  A   +P YGF  H GYPTA H+  +
Sbjct: 125 MPCSAEAIVKGDARSLSIAAASIIAKVMRDRIMVRADTLWPQYGFSGHKGYPTAAHRDAL 184

Query: 189 KEKGPSCIHRLTFRPLRN 206
              GP  IHR++FRP+RN
Sbjct: 185 ARLGPCQIHRMSFRPVRN 202


>gi|229524248|ref|ZP_04413653.1| ribonuclease HII [Vibrio cholerae bv. albensis VL426]
 gi|229337829|gb|EEO02846.1| ribonuclease HII [Vibrio cholerae bv. albensis VL426]
          Length = 206

 Score =  267 bits (684), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 93/202 (46%), Positives = 123/202 (60%), Gaps = 2/202 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           + ++P  EL           +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S 
Sbjct: 1   MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSE 60

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KKR  L+ +I   A+  S+   S Q ID+ NI +AT+ A+  AV  L++ P   LIDG  
Sbjct: 61  KKRLALFPEIQEKALAWSVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK 120

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           IP+ LP +A AV+KGD     I+AASIIAKV RD+ M    K+YP +GF  H GYPTA H
Sbjct: 121 IPK-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179

Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206
              I++ G    HR +F P++ 
Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201


>gi|209886088|ref|YP_002289945.1| ribonuclease HII (RNase HII) [Oligotropha carboxidovorans OM5]
 gi|209874284|gb|ACI94080.1| ribonuclease HII (RNase HII) [Oligotropha carboxidovorans OM5]
          Length = 259

 Score =  267 bits (683), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 95/200 (47%), Positives = 134/200 (67%), Gaps = 1/200 (0%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           ++  RP F  E  + ++ +WPVAG DEVGRG LAGPVV AA+ILDP+ IP GINDSK+++
Sbjct: 24  TVVTRPSFRRERALMKQGIWPVAGCDEVGRGPLAGPVVAAAVILDPDRIPKGINDSKRLT 83

Query: 65  HKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
            + RE L+E+I ++A +S+++A    ID+ NI +A+L A+  AV+ L   PR   +DGR 
Sbjct: 84  AEAREALFEEICATAFVSVAAAPPWRIDRDNILRASLWALTRAVKGLPQPPRHVFVDGRD 143

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
               + C+  AVI GD +  SI AASI+AKVTRDRLM    ++YP YGF+SH+GY   +H
Sbjct: 144 -KIAVSCECEAVIGGDGLLFSIGAASIVAKVTRDRLMCALARQYPQYGFESHMGYAVPQH 202

Query: 185 QQVIKEKGPSCIHRLTFRPL 204
              ++  GP+  HR  F P+
Sbjct: 203 LAALERHGPTPHHRRHFAPV 222


>gi|46143677|ref|ZP_00134750.2| COG0164: Ribonuclease HII [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|126207617|ref|YP_001052842.1| ribonuclease HII [Actinobacillus pleuropneumoniae L20]
 gi|303251953|ref|ZP_07338124.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|166225164|sp|A3MYK1|RNH2_ACTP2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|126096409|gb|ABN73237.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
 gi|302649383|gb|EFL79568.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
          Length = 197

 Score =  267 bits (683), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 88/187 (47%), Positives = 118/187 (63%), Gaps = 2/187 (1%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
           N   +AG+DEVGRG L G VV AA+IL PNN   G+ DSKK+S KKR  L E+I + A+ 
Sbjct: 9   NAHLIAGVDEVGRGPLVGAVVTAAVILAPNNPIEGLADSKKLSEKKRLLLAEEIKAKALC 68

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            S+  A  + ID+ NI  AT+ A+  AV  L + P   L+DG  IP  LP  A AVIKGD
Sbjct: 69  WSLGRAEPEEIDRLNILHATMLAMQRAVAGLNIQPDFVLVDGNRIPT-LPMPAQAVIKGD 127

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S+   I+AASI+AKV RD+ M     +YP+YGF  H GYPT  H + +++ G +  HR +
Sbjct: 128 SLVAEISAASILAKVARDQEMAELDVQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKS 187

Query: 201 FRPLRNL 207
           F P++ +
Sbjct: 188 FAPVKKI 194


>gi|308185754|ref|YP_003929885.1| Ribonuclease HII [Pantoea vagans C9-1]
 gi|308056264|gb|ADO08436.1| Ribonuclease HII [Pantoea vagans C9-1]
          Length = 208

 Score =  267 bits (683), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 88/184 (47%), Positives = 115/184 (62%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             +AG+DEVGRG L G VV AA+ILDP N   G+ DSKK+S K+R  LY++I   A+  S
Sbjct: 10  RLIAGVDEVGRGPLVGAVVTAAVILDPANPITGLADSKKLSEKRRLSLYDEIKEKALAWS 69

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A  + ID+ NI  AT+ A+  AV  L + P   LIDG   P  LP  + AV+KGDS+
Sbjct: 70  LGRAEPEEIDQLNILHATMLAMQRAVAGLSIQPDYVLIDGNRCPA-LPMPSQAVVKGDSL 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASIIAKV+RDR M      +P YGF  H GYPTA H + + + G +  HR +F 
Sbjct: 129 VAEISAASIIAKVSRDREMAELDLLFPQYGFAQHKGYPTALHMEKLTQYGATPHHRRSFA 188

Query: 203 PLRN 206
           P+RN
Sbjct: 189 PVRN 192


>gi|262166323|ref|ZP_06034060.1| ribonuclease HII [Vibrio mimicus VM223]
 gi|262026039|gb|EEY44707.1| ribonuclease HII [Vibrio mimicus VM223]
          Length = 206

 Score =  267 bits (683), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 92/202 (45%), Positives = 119/202 (58%), Gaps = 2/202 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           + ++P  EL           +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S 
Sbjct: 1   MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSE 60

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KKR  L+ +I   A+  S+   S Q ID+ NI +AT+ A+  AV  L V P   L+DG  
Sbjct: 61  KKRLALFPEIQEKALAWSVGRCSPQEIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNK 120

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +P  LP  A AV+KGD     I+AASIIAKV RD  M    K+YP +GF  H GYPTA H
Sbjct: 121 VPT-LPMDAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAAH 179

Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206
              I++ G    HR +F P++ 
Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201


>gi|237808842|ref|YP_002893282.1| Ribonuclease H [Tolumonas auensis DSM 9187]
 gi|237501103|gb|ACQ93696.1| Ribonuclease H [Tolumonas auensis DSM 9187]
          Length = 197

 Score =  267 bits (683), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 89/184 (48%), Positives = 115/184 (62%), Gaps = 2/184 (1%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81
              +AG+DEVGRG L G VV AA+ILDP     G+NDSKK+S KKRE L++ I  + +  
Sbjct: 9   YQLIAGVDEVGRGPLIGDVVTAAVILDPARPITGLNDSKKLSEKKREALFDIIRENVLAF 68

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           +I   S   ID+ NI +AT+ A+  AV  L V P   LIDG   P  L   + AV+KGDS
Sbjct: 69  AIGRCSAAEIDQFNILQATMKAMQRAVAGLSVQPEFVLIDGNRCPA-LSMPSQAVVKGDS 127

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +   I+AASI+AKVTRDR M    + YP YGF  H GYPTA+H   + E G   IHR +F
Sbjct: 128 LVAEISAASILAKVTRDREMAELDQLYPQYGFAQHKGYPTAQHLAALAEHGALAIHRRSF 187

Query: 202 RPLR 205
           +P++
Sbjct: 188 KPVK 191


>gi|148981147|ref|ZP_01816309.1| ribonuclease HII [Vibrionales bacterium SWAT-3]
 gi|145960974|gb|EDK26299.1| ribonuclease HII [Vibrionales bacterium SWAT-3]
          Length = 206

 Score =  267 bits (683), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 93/208 (44%), Positives = 123/208 (59%), Gaps = 7/208 (3%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           M      E P FE       +     AG+DEVGRG L G VV AA+ILDPNN   G+NDS
Sbjct: 1   MAVKEKKELPPFEYP-----QGYQLFAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDS 55

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           KK+S KKR  L  +I   A+  S+   S Q ID+ NI +AT+ A+  A+  L V P  AL
Sbjct: 56  KKLSEKKRLALLPEIKEKALAWSVGRCSPQEIDELNILQATMVAMQRAIAGLSVQPDMAL 115

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           IDG  +PE LP    AV+KGD     I+AASIIAKV RD+ M    K +P++GF  H GY
Sbjct: 116 IDGNRVPE-LPMAGIAVVKGDLRVAEISAASIIAKVVRDQEMEELDKLHPEFGFAKHKGY 174

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           PT  H + I++ G +  +R +F+P++ +
Sbjct: 175 PTKAHFEAIEKHGVTEHYRKSFKPVKRI 202


>gi|322376562|ref|ZP_08051055.1| ribonuclease HII [Streptococcus sp. M334]
 gi|321282369|gb|EFX59376.1| ribonuclease HII [Streptococcus sp. M334]
          Length = 259

 Score =  267 bits (683), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 86/197 (43%), Positives = 125/197 (63%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ +  +AG+DEVGRG LAGPVV AA+IL  N     +NDSKKI  KK  E+
Sbjct: 58  LSYEKELYKQGLTLIAGVDEVGRGPLAGPVVSAAVILPQNCKIKDLNDSKKIPKKKHLEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ +   A+ I I    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DLP
Sbjct: 118 FQAVQDQALSIGIGIMDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAKH + +++
Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKDYDQQFPGYDFTANAGYGTAKHLEGLEK 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR +F P+++L
Sbjct: 236 LGVTPIHRTSFEPVKSL 252


>gi|260588681|ref|ZP_05854594.1| ribonuclease HII [Blautia hansenii DSM 20583]
 gi|260541156|gb|EEX21725.1| ribonuclease HII [Blautia hansenii DSM 20583]
          Length = 256

 Score =  267 bits (683), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 89/190 (46%), Positives = 122/190 (64%), Gaps = 4/190 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E          + GIDEVGRG  AGPVV  A+IL P+     +NDSK++S K RE+LY
Sbjct: 60  EFEREYEHLGY--ICGIDEVGRGPFAGPVVAGAVILPPDCEILYVNDSKQLSEKMREQLY 117

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           ++I   A+ +++  AS Q ID+ NI +AT +A+  AV  L V P+  L D  +IP+ +  
Sbjct: 118 DEIMEKAVSVAVGYASPQRIDEINILQATYEAMREAVSKLDVTPQILLNDAVTIPQ-ITI 176

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +IKGD+ S+SIAAASI+AKVTRDRLMR   K  P+YGF S+ GY + +H + IK+ 
Sbjct: 177 PQVPIIKGDAKSISIAAASIVAKVTRDRLMREYDKIMPEYGFASNKGYGSKEHIEAIKKY 236

Query: 192 GPSCIHRLTF 201
           GP+ IHR +F
Sbjct: 237 GPTPIHRRSF 246


>gi|52080208|ref|YP_078999.1| ribonuclease HII [Bacillus licheniformis ATCC 14580]
 gi|52785585|ref|YP_091414.1| ribonuclease HII [Bacillus licheniformis ATCC 14580]
 gi|319646013|ref|ZP_08000243.1| ribonuclease HII [Bacillus sp. BT1B_CT2]
 gi|73917597|sp|Q65JP3|RNH2_BACLD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|52003419|gb|AAU23361.1| ribonuclease HII [Bacillus licheniformis ATCC 14580]
 gi|52348087|gb|AAU40721.1| RnhB [Bacillus licheniformis ATCC 14580]
 gi|317391763|gb|EFV72560.1| ribonuclease HII [Bacillus sp. BT1B_CT2]
          Length = 255

 Score =  266 bits (682), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 87/194 (44%), Positives = 118/194 (60%), Gaps = 3/194 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  +R +    +AGIDE GRG LAGPVV AA+IL  +    G+ DSKK+S +KRE+ Y
Sbjct: 61  SFERSLRARGYQYIAGIDEAGRGPLAGPVVAAAVILKEDCEILGLTDSKKLSKQKREDYY 120

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   A  + +  A    ID+ NI++A+  A+  AV+ L V P   LID  S+  D   
Sbjct: 121 SYIMEEAAAVGVGIADAHEIDELNIYEASKAAMLKAVQALDVAPDYLLIDAMSLAVD--T 178

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +  ++IKGD+ S SIAA + IAKVTRDRLM    +KYP YGF+ H GY T +H   + + 
Sbjct: 179 EQSSIIKGDAKSASIAAGACIAKVTRDRLMDEYAEKYPLYGFEKHKGYGTKEHLNALAKY 238

Query: 192 GPSCIHRLTFRPLR 205
           GPS IHR +F P++
Sbjct: 239 GPSPIHRRSFAPVK 252


>gi|291484157|dbj|BAI85232.1| ribonuclease HII [Bacillus subtilis subsp. natto BEST195]
          Length = 255

 Score =  266 bits (682), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 83/196 (42%), Positives = 120/196 (61%), Gaps = 3/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E + R K    +AG+DEVGRG LAGPVV +A+IL       G+ DSKK+S KKREE Y
Sbjct: 61  SYERLARNKGFRLIAGVDEVGRGPLAGPVVASAVILPEECEILGLTDSKKLSEKKREEYY 120

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E I   A+ + I       ID+ NI++A+  A+  A+++L   P   L+D  ++P  L  
Sbjct: 121 ELIMKEALAVGIGIVEATVIDEINIYEASKMAMVKAIQDLSGTPDYLLVDAMTLP--LDT 178

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAA + IAKVTRDR+M    + YP YGF+ + GY T +H + +   
Sbjct: 179 AQASIIKGDAKSVSIAAGACIAKVTRDRMMSAYAETYPMYGFEKNKGYGTKEHLEALAAY 238

Query: 192 GPSCIHRLTFRPLRNL 207
           GP+ +HR TF P+++ 
Sbjct: 239 GPTELHRKTFAPVQSF 254


>gi|149192146|ref|ZP_01870367.1| ribonuclease HII [Vibrio shilonii AK1]
 gi|148834016|gb|EDL51032.1| ribonuclease HII [Vibrio shilonii AK1]
          Length = 208

 Score =  266 bits (682), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 91/200 (45%), Positives = 120/200 (60%), Gaps = 7/200 (3%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E P F+       +    VAG+DEVGRG L G +V AA+ILDPNN   G+NDSKK+S KK
Sbjct: 9   ELPPFDYP-----QGYSLVAGVDEVGRGPLVGDIVTAAVILDPNNPIEGLNDSKKLSEKK 63

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  LY +I   A+  ++   S   ID+ NI +AT+ A+  AV  LQV P   LIDG   P
Sbjct: 64  RLALYPEIKEKALAWAVGRCSPTEIDELNILQATMVAMQRAVAGLQVQPDMVLIDGNRTP 123

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP  A AV+KGD     I+AASIIAKV RD+ M    +++P +GF  H GYPT  H +
Sbjct: 124 T-LPMDAQAVVKGDLRVAEISAASIIAKVVRDQEMEELDQQHPQFGFAKHKGYPTKAHFE 182

Query: 187 VIKEKGPSCIHRLTFRPLRN 206
            I++ G    HR +F+P++ 
Sbjct: 183 AIEQHGVIAEHRKSFKPVKR 202


>gi|68249618|ref|YP_248730.1| ribonuclease HII [Haemophilus influenzae 86-028NP]
 gi|81335953|sp|Q4QLM7|RNH2_HAEI8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|68057817|gb|AAX88070.1| ribonuclease HII [Haemophilus influenzae 86-028NP]
          Length = 197

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 86/187 (45%), Positives = 119/187 (63%), Gaps = 1/187 (0%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +    +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L E+I   A+
Sbjct: 6   QGYELIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLALAEEIKEKAL 65

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             ++  A    ID+ NI +A+L A+  AV++L++ P   L+DG  IP+DL   A AV+KG
Sbjct: 66  AWALGRAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLAIPAQAVVKG 125

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D++   I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR 
Sbjct: 126 DNLVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRR 185

Query: 200 TFRPLRN 206
           +F P++ 
Sbjct: 186 SFAPVKK 192


>gi|16078669|ref|NP_389488.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309481|ref|ZP_03591328.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313806|ref|ZP_03595611.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221318730|ref|ZP_03600024.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221323001|ref|ZP_03604295.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. SMY]
 gi|6685901|sp|O31744|RNH2_BACSU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|2633978|emb|CAB13479.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. 168]
          Length = 255

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 83/196 (42%), Positives = 120/196 (61%), Gaps = 3/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E + R K    +AG+DEVGRG LAGPVV +A+IL       G+ DSKK+S KKREE Y
Sbjct: 61  SYERLARNKGFRLIAGVDEVGRGPLAGPVVASAVILPEECEILGLTDSKKLSEKKREEYY 120

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E I   A+ + I       ID+ NI++A+  A+  A+++L   P   L+D  ++P  L  
Sbjct: 121 ELIMKEALAVGIGIVEATVIDEINIYEASKMAMVKAIQDLSDTPDYLLVDAMTLP--LDT 178

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAA + IAKVTRDR+M    + YP YGF+ + GY T +H + +   
Sbjct: 179 AQASIIKGDAKSVSIAAGACIAKVTRDRMMSAYAETYPMYGFEKNKGYGTKEHLEALAAY 238

Query: 192 GPSCIHRLTFRPLRNL 207
           GP+ +HR TF P+++ 
Sbjct: 239 GPTELHRKTFAPVQSF 254


>gi|90580985|ref|ZP_01236786.1| ribonuclease HII [Vibrio angustum S14]
 gi|90437863|gb|EAS63053.1| ribonuclease HII [Vibrio angustum S14]
          Length = 203

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 92/196 (46%), Positives = 121/196 (61%), Gaps = 3/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           ELE  V  +    +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK++ KKR  L+
Sbjct: 6   ELEPFVYPQ-ATCIAGVDEVGRGPLVGAVVTAAVILDPNNPIKGLTDSKKLTEKKRNLLF 64

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           ++I   A+  S+       ID  NI +AT+ A+  AV  L V P   LIDG  +PE LP 
Sbjct: 65  DEIKEKALSWSLGRCEADEIDNLNILQATMVAMQRAVAGLSVQPDYVLIDGNKVPE-LPM 123

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
            A AV+KGD     I+AASIIAKVTRDR M I   ++P YGF  H GYPT  H + +++ 
Sbjct: 124 AAQAVVKGDLRVAEISAASIIAKVTRDREMEILDAEFPQYGFAKHKGYPTKAHFEALEQY 183

Query: 192 GPSCIHRLTFRPLRNL 207
           G    HR +F+P++ +
Sbjct: 184 GAIEQHRKSFKPVKRV 199


>gi|268318031|ref|YP_003291750.1| Ribonuclease H [Rhodothermus marinus DSM 4252]
 gi|262335565|gb|ACY49362.1| Ribonuclease H [Rhodothermus marinus DSM 4252]
          Length = 198

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 90/191 (47%), Positives = 121/191 (63%), Gaps = 1/191 (0%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E    ++    VAG+DEVGRG LAGPVV AA+IL P+    G+ DSK++  + RE+L 
Sbjct: 5   RPEVRCWQQGYRWVAGVDEVGRGCLAGPVVAAAVILPPHVQLDGVRDSKQLRPEVREKLA 64

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E+I + A+ I I   + + ID+ NI  A L+A+  AV NL++ P   LIDG     D PC
Sbjct: 65  EQIRAQALAIGIGMCTPEEIDRLNILNAALEAMRRAVANLELTPDYLLIDGNRCFSDPPC 124

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
            A  ++KGD  SL IAAASIIAK TRD LM+  H+++P YG+D +VGYPT  H + +   
Sbjct: 125 PAKPIVKGDQQSLLIAAASIIAKTTRDALMQQLHEEFPVYGWDRNVGYPTRTHYEALARY 184

Query: 192 GPSCIHRLTFR 202
           GPS  HR +FR
Sbjct: 185 GPSPYHRRSFR 195


>gi|94988631|ref|YP_596732.1| ribonuclease HII [Streptococcus pyogenes MGAS9429]
 gi|94992454|ref|YP_600553.1| ribonuclease HII [Streptococcus pyogenes MGAS2096]
 gi|166226658|sp|Q1JBP9|RNH2_STRPB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166226659|sp|Q1JLN1|RNH2_STRPC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|94542139|gb|ABF32188.1| ribonuclease HII [Streptococcus pyogenes MGAS9429]
 gi|94545962|gb|ABF36009.1| Ribonuclease HII [Streptococcus pyogenes MGAS2096]
          Length = 263

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 83/200 (41%), Positives = 121/200 (60%), Gaps = 6/200 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +K    +AGIDEVGRG LAGPVV A +IL       G+NDSKKI   K E +
Sbjct: 59  LSYEKALYKKGYQAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKSKHETI 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127
           Y+ +   A+ I I    +Q ID+ NI++AT  A+  A++ L+     P   LID  ++  
Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLESQLTQPDYLLIDAMTL-- 176

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           D+     +++KGD+ SLSIAAASI+AKVTRD++M    + +P YGF  + GY T +H Q 
Sbjct: 177 DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQG 236

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           +K  G + IHR +F P++++
Sbjct: 237 LKAYGITPIHRKSFEPVKSM 256


>gi|327462197|gb|EGF08524.1| ribonuclease HII [Streptococcus sanguinis SK1]
          Length = 254

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 84/197 (42%), Positives = 121/197 (61%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +     +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  KK +++
Sbjct: 58  LRYEKELYQTGFRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQDI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ +   A+ + +    ++ ID+ NI++AT  A+  A+  L + P   LID   +  D+ 
Sbjct: 118 YQAVMDKALAVGVGLIDNEIIDQVNIYEATKLAMKEALSKLCLKPDYLLIDAMKL--DID 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD+LM    K+YP Y F  + GY T  H Q ++ 
Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSHLQGLER 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR TF P++++
Sbjct: 236 HGVTPIHRKTFEPVKSM 252


>gi|89075406|ref|ZP_01161823.1| ribonuclease HII [Photobacterium sp. SKA34]
 gi|89048822|gb|EAR54392.1| ribonuclease HII [Photobacterium sp. SKA34]
          Length = 203

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 91/196 (46%), Positives = 121/196 (61%), Gaps = 3/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E  V  +    +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK++ KKR  L+
Sbjct: 6   EFEPFVYPQ-ATCIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTEKKRNLLF 64

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           ++I   A+  S+       IDK NI +AT+ A+  AV  L + P   LIDG  +PE LP 
Sbjct: 65  DEIKEKALSWSLGRCEADEIDKLNILQATMVAMQRAVAGLSLQPDYVLIDGNKVPE-LPM 123

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
            A AV+KGD     I+AASIIAKVTRDR M I   ++P YGF  H GYPT  H + +++ 
Sbjct: 124 AAQAVVKGDLRVAEISAASIIAKVTRDREMEILGAEFPQYGFAKHKGYPTKAHFEALEQY 183

Query: 192 GPSCIHRLTFRPLRNL 207
           G    HR +F+P++ +
Sbjct: 184 GAIEQHRKSFKPVKRV 199


>gi|226327034|ref|ZP_03802552.1| hypothetical protein PROPEN_00895 [Proteus penneri ATCC 35198]
 gi|225204252|gb|EEG86606.1| hypothetical protein PROPEN_00895 [Proteus penneri ATCC 35198]
          Length = 196

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 89/183 (48%), Positives = 115/183 (62%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP N   G+ DSKK++ KKR  LY++I   A+  +I
Sbjct: 10  LIAGVDEVGRGPLVGAVVTAAVILDPANPIEGLTDSKKLTEKKRNALYDEIKEKALCWAI 69

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  + AVIKGDS+ 
Sbjct: 70  GRAEPEEIDELNILWATMKAMERAVAGLSITPDMVLIDGNRCPK-LPMASQAVIKGDSLV 128

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M    K YPDYGF  H GYPT  H + +   G +  HR +F P
Sbjct: 129 QEISAASILAKVTRDREMEELDKLYPDYGFAKHKGYPTVFHMEKLALLGATPYHRKSFAP 188

Query: 204 LRN 206
           ++ 
Sbjct: 189 VKR 191


>gi|188533051|ref|YP_001906848.1| Ribonuclease HII [Erwinia tasmaniensis Et1/99]
 gi|238691983|sp|B2VHY0|RNH2_ERWT9 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|188028093|emb|CAO95950.1| Ribonuclease HII [Erwinia tasmaniensis Et1/99]
          Length = 207

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/184 (47%), Positives = 115/184 (62%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             +AG+DEVGRG L G VV AA+ILDP+    G+ DSKK+S K+R  LY++I   A+  S
Sbjct: 10  RLIAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLGDSKKLSEKRRLALYDEIKDKALSWS 69

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A  + ID+ NI  AT+ A+  AV  L + P   LIDG   P  L   + AV+KGDS+
Sbjct: 70  LGRAEPEEIDQLNILHATMLAMQRAVAGLHLSPDFVLIDGNRCPA-LAMPSRAVVKGDSL 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRDR M     +YP YGF  H GYPTA H + + + G +  HR +F 
Sbjct: 129 VPEISAASILAKVTRDREMCELDLQYPQYGFARHKGYPTAVHVEKLAQFGATPQHRRSFA 188

Query: 203 PLRN 206
           P+RN
Sbjct: 189 PVRN 192


>gi|145630149|ref|ZP_01785931.1| ribonuclease HII [Haemophilus influenzae R3021]
 gi|144984430|gb|EDJ91853.1| ribonuclease HII [Haemophilus influenzae R3021]
          Length = 197

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 86/187 (45%), Positives = 119/187 (63%), Gaps = 1/187 (0%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +    +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L E+I   A+
Sbjct: 6   QGYELIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLALAEEIKEKAL 65

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             ++  A    ID+ NI +A+L A+  A+++L++ P   L+DG  IP+DL   A AV+KG
Sbjct: 66  AWALGRAEANEIDEINILQASLLAMTRAIKSLKIQPHFVLVDGNKIPKDLAIPAQAVVKG 125

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DS+   I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR 
Sbjct: 126 DSLVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRR 185

Query: 200 TFRPLRN 206
           +F P++ 
Sbjct: 186 SFAPVKK 192


>gi|319898589|ref|YP_004158682.1| Ribonuclease HII [Bartonella clarridgeiae 73]
 gi|319402553|emb|CBI76098.1| Ribonuclease HII [Bartonella clarridgeiae 73]
          Length = 212

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 103/208 (49%), Positives = 146/208 (70%), Gaps = 4/208 (1%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           MF  ++P +P+F  E  +++K  + +AG+DEVGRG LAGPVV AA++LD + IP G+NDS
Sbjct: 1   MF--NVPFQPNFSYELDLQKKGFFYIAGVDEVGRGPLAGPVVTAAVVLDKDCIPEGVNDS 58

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           KK+S ++R +LY +I  +A+ IS++S   + IDK +I KATL+A+   +  L +    AL
Sbjct: 59  KKLSSQQRNKLYYEILQNALAISVASICARTIDKSDIRKATLEAMRRCISGLAISAHYAL 118

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           IDGR +P +LPC A A+IKGD  S+SIAAASIIAKV RDR+M+ A + Y +YG + HVGY
Sbjct: 119 IDGRDVPPNLPCPAIALIKGDQSSVSIAAASIIAKVMRDRMMQYAGQVYQNYGLEKHVGY 178

Query: 180 PTAKHQQVIKEKGPS-CIHRLTFRPLRN 206
            TA H+  I + GP   +HR +F PL+ 
Sbjct: 179 ATAAHRAAIDKYGPIVRLHRYSFSPLKE 206


>gi|307260586|ref|ZP_07542278.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306869663|gb|EFN01448.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
          Length = 186

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/183 (47%), Positives = 117/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L  +I + A+  S+ 
Sbjct: 2   IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLLLAGEIKAKALCWSLG 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L + P   L+DG  IP  LP  A AVIKGDS+  
Sbjct: 62  RAEPEEIDRLNILHATMLAMQRAVAGLNIQPDFVLVDGNRIPT-LPMPAQAVIKGDSLVA 120

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M     +YP+YGF  H GYPT  H + +++ G +  HR +F P+
Sbjct: 121 EISAASILAKVARDQEMAELDVQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKSFAPV 180

Query: 205 RNL 207
           + +
Sbjct: 181 KKI 183


>gi|324991142|gb|EGC23076.1| ribonuclease HII [Streptococcus sanguinis SK353]
          Length = 254

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 86/197 (43%), Positives = 123/197 (62%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +     +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  KK +E+
Sbjct: 58  LRYEKELYQAGYRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ +   A+ + +   +++ ID+ NI++AT  A+  A+  L + P   LID   +  D+P
Sbjct: 118 YQAVLDKALAVGVGLMNNEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKLDVDIP 177

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD+LM    K+YP Y F  + GY T  H Q ++ 
Sbjct: 178 --QESIIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSHLQGLER 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR TF P++++
Sbjct: 236 HGVTPIHRKTFEPVKSM 252


>gi|293365454|ref|ZP_06612163.1| ribonuclease HII [Streptococcus oralis ATCC 35037]
 gi|291315822|gb|EFE56266.1| ribonuclease HII [Streptococcus oralis ATCC 35037]
          Length = 259

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/197 (44%), Positives = 123/197 (62%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ +  +AG+DEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK  E+
Sbjct: 58  LSYEKELYKQGLTLIAGVDEVGRGPLAGPVVAAAVILPKNCKIRGLNDSKKIPKKKHLEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y  +   A+ I I    +Q ID+ NI++AT  A+  A+  +   P   LID   +  +L 
Sbjct: 118 YHAVQDQALAIGIGIMDNQVIDQVNIYEATKLAMKEAISQVSPKPEHLLIDAMKL--ELS 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               A+IKGD+ SLSIAAASI+AKVTRD LM+   ++YP Y F ++ GY TAKH + +++
Sbjct: 176 IPQTAIIKGDANSLSIAAASIVAKVTRDELMKEYDQQYPGYDFTANAGYGTAKHLEGLEK 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR +F P++ L
Sbjct: 236 LGVTPIHRTSFEPVKTL 252


>gi|315179359|gb|ADT86273.1| ribonuclease HII [Vibrio furnissii NCTC 11218]
          Length = 206

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 91/203 (44%), Positives = 121/203 (59%), Gaps = 2/203 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           + ++P  EL           +AG+DEVGRG L G VV AA+ILDPN+   G+NDSKK+S 
Sbjct: 1   MAKKPEKELPPFEIPSGYHLIAGVDEVGRGPLVGDVVTAAVILDPNHPIEGLNDSKKLSE 60

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KKR  L  +I   A+  S+   S Q ID+ NI +AT+ A+  AV+ L + P   L+DG  
Sbjct: 61  KKRLALLPEIQQKALAWSVGRCSPQEIDELNIFQATMLAMQRAVDGLAIKPDLVLVDGNK 120

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           IP  LP  A AV+KGD     I+AASIIAKV RD+ M    K YP +GF  H GYPT  H
Sbjct: 121 IP-SLPMDAQAVVKGDLRVAQISAASIIAKVVRDQEMEELDKVYPQFGFAKHKGYPTKAH 179

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
            + I++ G    HR +F P++ +
Sbjct: 180 FEAIEQHGVIDQHRRSFGPVKRV 202


>gi|256823113|ref|YP_003147076.1| Ribonuclease H [Kangiella koreensis DSM 16069]
 gi|256796652|gb|ACV27308.1| Ribonuclease H [Kangiella koreensis DSM 16069]
          Length = 191

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 90/184 (48%), Positives = 121/184 (65%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG LAGPVV AA+ILDP N   G+ DSKK++ K+RE L  +I   A+  SI
Sbjct: 6   LIAGVDEVGRGPLAGPVVAAAVILDPANPIVGLADSKKLTEKRREALSIEIKEKALAWSI 65

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI +A+L A+  AVE L   P  ALIDG   PE L C+  A+IKGDS  
Sbjct: 66  ARAEVEEIDRINILQASLLAMKRAVETLSHSPELALIDGNHCPE-LDCRMEAIIKGDSKE 124

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AKV RD  M    + YP YGF  H GYPT +H++ I + G + IHR ++ P
Sbjct: 125 PAISAASILAKVARDTEMVEMEQTYPGYGFAKHKGYPTQQHREAIMQLGITPIHRRSYAP 184

Query: 204 LRNL 207
           ++ +
Sbjct: 185 VQRM 188


>gi|163733084|ref|ZP_02140528.1| ribonuclease HII [Roseobacter litoralis Och 149]
 gi|161393619|gb|EDQ17944.1| ribonuclease HII [Roseobacter litoralis Och 149]
          Length = 209

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 88/198 (44%), Positives = 133/198 (67%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P+FE+E          VAG+DEVGRG LAGPV  AA++LDP NIP G+NDSK++S K+R 
Sbjct: 3   PNFEMEEAAMALGALRVAGVDEVGRGPLAGPVTAAAVVLDPANIPDGLNDSKQLSAKRRN 62

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L E + SSA IS+  AS + I++HNI +A+  A+  A+  L++ P   LIDG  +P+ L
Sbjct: 63  LLGEALASSADISVGHASVEEIEQHNILRASHIAMLRALAGLRLRPDYVLIDGSMVPKGL 122

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             +A  V+KGD+  LSI+AASIIAK+ RD++M    +++P YG+++++GY +  H   ++
Sbjct: 123 NLRAQPVVKGDTRCLSISAASIIAKIARDKIMVDLAQQHPGYGWETNMGYGSKSHISALR 182

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G +  HR TF+P+ ++
Sbjct: 183 NLGVTPHHRRTFKPVHHM 200


>gi|321315372|ref|YP_004207659.1| ribonuclease HII [Bacillus subtilis BSn5]
 gi|320021646|gb|ADV96632.1| ribonuclease HII [Bacillus subtilis BSn5]
          Length = 255

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 84/196 (42%), Positives = 121/196 (61%), Gaps = 3/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E + R K    +AG+DEVGRG LAGPVV +A+IL       G+ DSKK+S KKREE Y
Sbjct: 61  SYERLARNKGFRLMAGVDEVGRGPLAGPVVASAVILPEECEILGLTDSKKLSEKKREEYY 120

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E I   A+ + I       ID+ NI++A+  A+  A+++L   P   L+D  ++P  L  
Sbjct: 121 ELIMKEALAVGIGIVEATVIDEINIYEASKMAMVKAIQDLSDTPDYLLVDAMTLP--LDT 178

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAA+ IAKVTRDR+M    + YP YGF+ + GY T +H + +   
Sbjct: 179 AQASIIKGDAKSVSIAAAACIAKVTRDRMMSAYAETYPMYGFEKNKGYGTKEHLEALAAY 238

Query: 192 GPSCIHRLTFRPLRNL 207
           GP+ +HR TF P+++ 
Sbjct: 239 GPTELHRKTFAPVQSF 254


>gi|260581887|ref|ZP_05849683.1| ribonuclease HII [Haemophilus influenzae NT127]
 gi|260095080|gb|EEW78972.1| ribonuclease HII [Haemophilus influenzae NT127]
          Length = 197

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 84/187 (44%), Positives = 119/187 (63%), Gaps = 1/187 (0%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +    +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L ++I   A+
Sbjct: 6   QGYELIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALADEIKEKAL 65

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             ++  A    ID+ NI +A+L A+  AV++L++ P   L+DG  IP+DL   + AV+KG
Sbjct: 66  AWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPSQAVVKG 125

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DS+   I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR 
Sbjct: 126 DSLVAEISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAELGALPQHRR 185

Query: 200 TFRPLRN 206
           +F P++ 
Sbjct: 186 SFAPVKK 192


>gi|89092102|ref|ZP_01165057.1| ribonuclease HII [Oceanospirillum sp. MED92]
 gi|89083837|gb|EAR63054.1| ribonuclease HII [Oceanospirillum sp. MED92]
          Length = 199

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 90/184 (48%), Positives = 116/184 (63%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDPN    G+ DSKK++ K+RE LY +I   A+   +
Sbjct: 13  LIAGVDEVGRGPLVGNVVAAAVILDPNKPIEGLADSKKLTAKRREALYHEIKDKALAWCV 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS + ID+ NI  A++ A+  AVE L +      +DG   P DL C +  V+KGDS  
Sbjct: 73  ASASPEEIDQINILHASMLAMKRAVEGLPLKAEFVYVDGNRSP-DLECPSEPVVKGDSKI 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKV RDR M    K YP YGF  H GYPTA H   +KE GP   HR +F+P
Sbjct: 132 PEISAASILAKVDRDREMEELDKTYPQYGFAKHKGYPTAAHFAALKEHGPLLEHRRSFKP 191

Query: 204 LRNL 207
           +R L
Sbjct: 192 VREL 195


>gi|309973468|gb|ADO96669.1| Ribonuclease HII [Haemophilus influenzae R2846]
          Length = 197

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 86/187 (45%), Positives = 119/187 (63%), Gaps = 1/187 (0%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +    +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L ++I   A+
Sbjct: 6   QGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALADEIKEKAL 65

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             ++  A    ID+ NI +A+L A+  AV++L++ P   L+DG  IP+DL   A AV+KG
Sbjct: 66  AWALGRAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKG 125

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DSI   I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR 
Sbjct: 126 DSIVAEISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAEFGTLPQHRR 185

Query: 200 TFRPLRN 206
           +F P++ 
Sbjct: 186 SFAPVKK 192


>gi|145638129|ref|ZP_01793739.1| ribonuclease HII [Haemophilus influenzae PittII]
 gi|145272458|gb|EDK12365.1| ribonuclease HII [Haemophilus influenzae PittII]
 gi|309751294|gb|ADO81278.1| Ribonuclease HII [Haemophilus influenzae R2866]
          Length = 197

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 86/187 (45%), Positives = 119/187 (63%), Gaps = 1/187 (0%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +    +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L E+I   A+
Sbjct: 6   QGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKAL 65

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             ++  A    ID+ NI +A+L A+  AV++L++ P   L+DG  IP+DL   A AV+KG
Sbjct: 66  AWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKG 125

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DS+   I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR 
Sbjct: 126 DSLVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAEFGALPQHRR 185

Query: 200 TFRPLRN 206
           +F P++ 
Sbjct: 186 SFAPVKK 192


>gi|145632423|ref|ZP_01788158.1| ribonuclease HII [Haemophilus influenzae 3655]
 gi|144987330|gb|EDJ93860.1| ribonuclease HII [Haemophilus influenzae 3655]
          Length = 197

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 85/187 (45%), Positives = 119/187 (63%), Gaps = 1/187 (0%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +    +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L ++I   A+
Sbjct: 6   QGYELIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALADEIKEKAL 65

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             ++  A    ID+ NI +A+L A+  AV++L++ P   L+DG  IP+DL   A AV+KG
Sbjct: 66  AWALGRAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKG 125

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DS+   I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR 
Sbjct: 126 DSLVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRR 185

Query: 200 TFRPLRN 206
           +F P++ 
Sbjct: 186 SFAPVKK 192


>gi|229846090|ref|ZP_04466202.1| ribonuclease HII [Haemophilus influenzae 7P49H1]
 gi|229811094|gb|EEP46811.1| ribonuclease HII [Haemophilus influenzae 7P49H1]
          Length = 197

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 86/187 (45%), Positives = 119/187 (63%), Gaps = 1/187 (0%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +    +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L E+I   A+
Sbjct: 6   QGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKAL 65

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             ++  A    ID+ NI +A+L A+  AV++L++ P   L+DG  IP+DL   A AV+KG
Sbjct: 66  AWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKG 125

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DS+   I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR 
Sbjct: 126 DSLVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRR 185

Query: 200 TFRPLRN 206
           +F P++ 
Sbjct: 186 SFAPVKK 192


>gi|148828223|ref|YP_001292976.1| ribonuclease HII [Haemophilus influenzae PittGG]
 gi|166225191|sp|A5UII7|RNH2_HAEIG RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|148719465|gb|ABR00593.1| ribonuclease HII [Haemophilus influenzae PittGG]
          Length = 197

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/187 (46%), Positives = 119/187 (63%), Gaps = 1/187 (0%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +    +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L ++I   A+
Sbjct: 6   QGYELIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLALADEIKEKAL 65

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             ++  A    ID+ NI +A+L A+  AV++L++ P   L+DG  IP+DL   A AV+KG
Sbjct: 66  AWALGRAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLAIPAQAVVKG 125

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DSI   I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR 
Sbjct: 126 DSIVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAEFGALPQHRR 185

Query: 200 TFRPLRN 206
           +F P++ 
Sbjct: 186 SFAPVKK 192


>gi|331266372|ref|YP_004326002.1| ribonuclease HII [Streptococcus oralis Uo5]
 gi|326683044|emb|CBZ00661.1| ribonuclease HII [Streptococcus oralis Uo5]
          Length = 259

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/197 (44%), Positives = 122/197 (61%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ +  +AG+DEVGRG LAGPVV AA+IL       G+NDSKKI  KK  E+
Sbjct: 58  LSYEKELYKQGLSLIAGVDEVGRGPLAGPVVAAAVILPKKCKIKGLNDSKKIPKKKHLEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y  +   A+ I I    ++ ID+ NI++AT  A+  A+  L   P   LID   +  +LP
Sbjct: 118 YHAVQDQALAIGIGIMDNEVIDQVNIYEATKLAMKEAISQLSPQPEHLLIDAMKL--ELP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               A+IKGD+ SLSIAAASI+AKVTRD LM+    +YP Y F ++ GY TAKH + +++
Sbjct: 176 ILQTAIIKGDANSLSIAAASIVAKVTRDELMKEYDNQYPGYDFTANAGYGTAKHLEGLEK 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR +F P++ L
Sbjct: 236 LGVTPIHRTSFEPVKTL 252


>gi|325912821|ref|ZP_08175199.1| ribonuclease HII [Lactobacillus iners UPII 60-B]
 gi|325477814|gb|EGC80948.1| ribonuclease HII [Lactobacillus iners UPII 60-B]
          Length = 250

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 94/197 (47%), Positives = 126/197 (63%), Gaps = 4/197 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E     +N   VAG+DEVGRG LAGPVV AA+ILD N     +NDSKK++ KKR E
Sbjct: 55  RFSYEKEFWCQN-KLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKKLTPKKRNE 113

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L+  I   A+ +S+  A++  IDK NI++A   A+  AV+ L+V P + L+D   +P DL
Sbjct: 114 LFPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVDAMDVPVDL 173

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +I+GDS S SIAAASI+AKV RDRLM    + YP+Y F  + GY TAKH   +K
Sbjct: 174 P--QLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGTAKHLSALK 231

Query: 190 EKGPSCIHRLTFRPLRN 206
           + GP+ IHR +F P+ +
Sbjct: 232 QYGPTPIHRFSFEPVSS 248


>gi|300024383|ref|YP_003756994.1| ribonuclease H [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526204|gb|ADJ24673.1| Ribonuclease H [Hyphomicrobium denitrificans ATCC 51888]
          Length = 231

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 96/197 (48%), Positives = 123/197 (62%), Gaps = 1/197 (0%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +P FELEA   +    P+AG+DE GRG  AGPVV AA+ILDP+ IP  I+DSK +    R
Sbjct: 9   KPTFELEAAEHQLGSRPIAGVDEAGRGPWAGPVVAAAVILDPDKIPANIDDSKTLDEDSR 68

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
             LY +I   AI+ +  A    ID+ NI  ATL A+  AV  L   P+  L+DG   P  
Sbjct: 69  AFLYRRIMKVAIVGVGIADVDRIDRENILGATLWAMAEAVSQLGETPKLVLVDGDKTPR- 127

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           +P    A++KGDS  LSIAAASI+AKVTRDRLM    + YP YGF+ H GY T +HQ  I
Sbjct: 128 IPMSVRAIVKGDSKCLSIAAASIVAKVTRDRLMMDFARAYPGYGFERHKGYGTPEHQAAI 187

Query: 189 KEKGPSCIHRLTFRPLR 205
            + G S +HR +FRP++
Sbjct: 188 AKLGVSALHRRSFRPVQ 204


>gi|323497990|ref|ZP_08102999.1| ribonuclease HII [Vibrio sinaloensis DSM 21326]
 gi|323317035|gb|EGA70037.1| ribonuclease HII [Vibrio sinaloensis DSM 21326]
          Length = 205

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 87/187 (46%), Positives = 116/187 (62%), Gaps = 2/187 (1%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +    +AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KKR  L  +I   A+
Sbjct: 15  QGYQRIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEKAL 74

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             S+   S   ID+ NI +AT+ A+  A++ L V P  ALIDG   PE L   + AV+KG
Sbjct: 75  AWSVGRCSPTEIDQLNILQATMVAMQRAIDGLAVKPDLALIDGNRCPE-LAMDSQAVVKG 133

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D     I+AASIIAKV RD+ M    K +P++GF  H GYPT  H + I++ G    HR 
Sbjct: 134 DLRVAEISAASIIAKVVRDQEMEELDKLHPEFGFAKHKGYPTKAHFEAIEKHGVIEQHRK 193

Query: 200 TFRPLRN 206
           +F+P++ 
Sbjct: 194 SFKPVKK 200


>gi|146281925|ref|YP_001172078.1| ribonuclease HII [Pseudomonas stutzeri A1501]
 gi|166226642|sp|A4VJT5|RNH2_PSEU5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|145570130|gb|ABP79236.1| ribonuclease HII [Pseudomonas stutzeri A1501]
 gi|327480168|gb|AEA83478.1| ribonuclease HII [Pseudomonas stutzeri DSM 4166]
          Length = 212

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/184 (48%), Positives = 119/184 (64%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L GPVV AA+ILDP     G+NDSKK++  +RE L+++I   A+   I
Sbjct: 13  LVAGVDEVGRGPLCGPVVTAAVILDPARPIEGLNDSKKLTEARREALFDEIREKAVAWCI 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI  AT+ A+  AVE L V PR ALIDG   P+ L   +  VI+GD+  
Sbjct: 73  ARAEVEEIDQLNILHATMLAMQRAVEGLSVTPRLALIDGNRCPQ-LAVPSAPVIQGDAQV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV+RDR M+     YP YG   H GYPT  H + ++  GP+ IHR +F P
Sbjct: 132 PAIAAASILAKVSRDREMQALDLCYPGYGLAGHKGYPTPSHLEALRRLGPTPIHRRSFAP 191

Query: 204 LRNL 207
           +R +
Sbjct: 192 VRAM 195


>gi|298245602|ref|ZP_06969408.1| Ribonuclease H [Ktedonobacter racemifer DSM 44963]
 gi|297553083|gb|EFH86948.1| Ribonuclease H [Ktedonobacter racemifer DSM 44963]
          Length = 223

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 85/206 (41%), Positives = 123/206 (59%), Gaps = 9/206 (4%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-------GINDSKK 62
           P    E  + E+    +AG+DE GRG LAGPVV AA+IL   + P        G+NDSK+
Sbjct: 9   PTLTEEMALFEQGYCFIAGLDEAGRGCLAGPVVAAAVILPLESNPTPVLARFTGVNDSKQ 68

Query: 63  ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           ++   RE LY+ I   A+ + +   S + ID+ NI +ATL ++  A+  L    ++ L+D
Sbjct: 69  LNEATRERLYDVIMEHALAVGVGIGSVELIDQRNILQATLQSMRVALTQLTPTAQALLLD 128

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
              +  D+P    ++ KGDS  LSIAAASIIAKVTRDRLM   H+++P YGF  H GY T
Sbjct: 129 AVRL-RDIPLPQLSLTKGDSRCLSIAAASIIAKVTRDRLMHQLHEEFPRYGFKQHKGYGT 187

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207
            +H + +K+ G +  HR +F P+R +
Sbjct: 188 PEHLEALKQFGVTPHHRRSFSPIREM 213


>gi|194014254|ref|ZP_03052871.1| ribonuclease HII (RNase HII) [Bacillus pumilus ATCC 7061]
 gi|194013280|gb|EDW22845.1| ribonuclease HII (RNase HII) [Bacillus pumilus ATCC 7061]
          Length = 254

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 85/197 (43%), Positives = 120/197 (60%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            + E   + +    +AGIDE GRG LAGPVV AA+IL  + +  G+NDSK++S KKR   
Sbjct: 58  LQFENNAKAQGYTCIAGIDEAGRGPLAGPVVAAAVILKEDTVLLGLNDSKQLSEKKRLAY 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I   A+ I I       ID+ NI++A+  A+  AVE L   P   LID  ++P  LP
Sbjct: 118 YDLIQKEALDIGIGIVDAATIDEINIYEASRLAMVRAVEQLTHTPDYLLIDAMTLP--LP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +IKGD+ S SIAA + IAKVTRD++M    +KYP+Y F+ H GY T +H   I+ 
Sbjct: 176 IHQENIIKGDAKSASIAAGACIAKVTRDQMMEEYGRKYPEYQFEKHKGYGTKEHLAAIQT 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHRL+F P++++
Sbjct: 236 HGAAPIHRLSFAPVKSV 252


>gi|88798271|ref|ZP_01113857.1| ribonuclease HII [Reinekea sp. MED297]
 gi|88779047|gb|EAR10236.1| ribonuclease HII [Reinekea sp. MED297]
          Length = 202

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 91/187 (48%), Positives = 123/187 (65%), Gaps = 1/187 (0%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
            +  VAG+DEVGRG LAG VV AA+ILDP     G+NDSKK+S  +R  L + I  +A+ 
Sbjct: 11  ELSHVAGVDEVGRGPLAGKVVTAAVILDPARPIDGLNDSKKLSPARRLALSQHIRENALS 70

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            +++ AS + ID+ NI  AT+ A+  AVE L V P   LIDG  +P  LPC A A++KGD
Sbjct: 71  YAVAEASVEEIDELNILGATMLAMRRAVEALSVAPNFCLIDGNRLPPGLPCPAEAIVKGD 130

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
               +I+AASI+AKVTRD+ M   H+++P+YGFD H GY TA+H   + + GP   HR +
Sbjct: 131 GSVPAISAASILAKVTRDQQMLDLHQQHPEYGFDQHKGYGTAQHLAALVKFGPLKEHRRS 190

Query: 201 FRPLRNL 207
           F P+R L
Sbjct: 191 FAPVRKL 197


>gi|317046996|ref|YP_004114644.1| ribonuclease H [Pantoea sp. At-9b]
 gi|316948613|gb|ADU68088.1| Ribonuclease H [Pantoea sp. At-9b]
          Length = 208

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 88/186 (47%), Positives = 116/186 (62%), Gaps = 2/186 (1%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
           N   +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++I   A+ 
Sbjct: 8   NARLIAGVDEVGRGPLVGAVVTAAVILDPAQPIIGLADSKKLSEKRRLALYDEIKEKALA 67

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            S+  A  + ID+ NI  AT+ A+  AV  L ++P   LIDG   P  LP  + AV+KGD
Sbjct: 68  WSLGRAEPEEIDQINILHATMLAMQRAVAGLPLVPDFVLIDGNRCPA-LPMPSQAVVKGD 126

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S+   I+AASI+AKVTRDR M      +P YGF  H GYPTA H + + + G +  HR +
Sbjct: 127 SLVAEISAASILAKVTRDREMAELDALFPQYGFAQHKGYPTALHMERLTQHGATPHHRRS 186

Query: 201 FRPLRN 206
           F P+RN
Sbjct: 187 FAPVRN 192


>gi|324994471|gb|EGC26384.1| ribonuclease HII [Streptococcus sanguinis SK678]
          Length = 254

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/197 (43%), Positives = 120/197 (60%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +     +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  KK +E+
Sbjct: 58  LRYEKELYKAGYQAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ +   A+ + I    ++ ID+ NI++AT  A+  A+  L   P   LID   +  D+P
Sbjct: 118 YQAVLDKALAVGIGLIDNEIIDRVNIYEATKLAMKEALSVLSHKPDYLLIDAMKLDVDIP 177

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ S SIAAASI+AKVTRD+LM    K+YP Y F  + GY T  H Q ++ 
Sbjct: 178 --QESIIKGDANSQSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSHLQGLER 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR TF P++++
Sbjct: 236 HGVTPIHRKTFEPIKSM 252


>gi|309805705|ref|ZP_07699745.1| ribonuclease HII [Lactobacillus iners LactinV 09V1-c]
 gi|309806745|ref|ZP_07700739.1| ribonuclease HII [Lactobacillus iners LactinV 03V1-b]
 gi|312873998|ref|ZP_07734034.1| ribonuclease HII [Lactobacillus iners LEAF 2052A-d]
 gi|312875510|ref|ZP_07735513.1| ribonuclease HII [Lactobacillus iners LEAF 2053A-b]
 gi|315653520|ref|ZP_07906441.1| ribonuclease HII [Lactobacillus iners ATCC 55195]
 gi|308164958|gb|EFO67201.1| ribonuclease HII [Lactobacillus iners LactinV 09V1-c]
 gi|308166860|gb|EFO69045.1| ribonuclease HII [Lactobacillus iners LactinV 03V1-b]
 gi|311089021|gb|EFQ47462.1| ribonuclease HII [Lactobacillus iners LEAF 2053A-b]
 gi|311090547|gb|EFQ48955.1| ribonuclease HII [Lactobacillus iners LEAF 2052A-d]
 gi|315489211|gb|EFU78852.1| ribonuclease HII [Lactobacillus iners ATCC 55195]
          Length = 250

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 94/202 (46%), Positives = 128/202 (63%), Gaps = 4/202 (1%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           +  +  F  E     +N   VAG+DEVGRG LAGPVV AA+ILD N     +NDSKK++ 
Sbjct: 50  LEFKTRFSYEKEFWCQN-KLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKKLTP 108

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KKR EL+  I   A+ +S+  A++  IDK NI++A   A+  AV+ L+V P + L+D   
Sbjct: 109 KKRNELFPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVDAMD 168

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +P DLP     +I+GDS S SIAAASI+AKV RDRLM    + YP+Y F  + GY TAKH
Sbjct: 169 VPVDLP--QLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGTAKH 226

Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206
              +K+ GP+ IHR +F P+ +
Sbjct: 227 LSALKQYGPTPIHRFSFEPVSS 248


>gi|153213786|ref|ZP_01948994.1| ribonuclease HII [Vibrio cholerae 1587]
 gi|124115710|gb|EAY34530.1| ribonuclease HII [Vibrio cholerae 1587]
          Length = 206

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 92/202 (45%), Positives = 123/202 (60%), Gaps = 2/202 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           + ++P  EL           +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S 
Sbjct: 1   MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSE 60

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KKR  L+ +I   A+  ++   S Q ID+ NI +AT+ A+  AV  L++ P   LIDG  
Sbjct: 61  KKRLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK 120

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           IP+ LP +A AV+KGD     I+AASIIAKV RD+ M    K+YP +GF  H GYPTA H
Sbjct: 121 IPK-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179

Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206
              I++ G    HR +F P++ 
Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201


>gi|306827335|ref|ZP_07460622.1| ribonuclease HII [Streptococcus pyogenes ATCC 10782]
 gi|304430482|gb|EFM33504.1| ribonuclease HII [Streptococcus pyogenes ATCC 10782]
          Length = 263

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 82/200 (41%), Positives = 122/200 (61%), Gaps = 6/200 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++    +AGIDEVGRG LAGPVV A +IL  +    G+NDSKKI   K E +
Sbjct: 59  LSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKSKHETI 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127
           Y+ +   A+ I I    +Q ID+ NI++AT  A+  A++ L+     P   LID  ++  
Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTL-- 176

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           D+     +++KGD+ SLSIAAASI+AKVTRD++M    + +P YGF  + GY T +H Q 
Sbjct: 177 DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQG 236

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           +K  G + IHR +F P++++
Sbjct: 237 LKAYGITPIHRKSFEPVKSM 256


>gi|319776686|ref|YP_004139174.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Haemophilus
           influenzae F3047]
 gi|329124205|ref|ZP_08252752.1| ribonuclease HII [Haemophilus aegyptius ATCC 11116]
 gi|317451277|emb|CBY87511.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Haemophilus
           influenzae F3047]
 gi|327467630|gb|EGF13128.1| ribonuclease HII [Haemophilus aegyptius ATCC 11116]
          Length = 197

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 88/187 (47%), Positives = 119/187 (63%), Gaps = 1/187 (0%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +    +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L E+I   A+
Sbjct: 6   QGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKAL 65

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             ++  A    ID+ NI +A+L A+  AV++L++ P   LIDG  IP+DL   A AV+KG
Sbjct: 66  AWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLIDGNKIPKDLDIPAQAVVKG 125

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DSI   I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR 
Sbjct: 126 DSIVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRR 185

Query: 200 TFRPLRN 206
           +F P++ 
Sbjct: 186 SFAPVKK 192


>gi|261344722|ref|ZP_05972366.1| ribonuclease HII [Providencia rustigianii DSM 4541]
 gi|282567164|gb|EFB72699.1| ribonuclease HII [Providencia rustigianii DSM 4541]
          Length = 196

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/183 (46%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK++ KKRE+L+++I   A+   I
Sbjct: 10  LIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLTEKKREKLFDEIKEKALCWCI 69

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID+ NI  AT+ A+  AV  L + P   L+DG   P+ L   + AV+KGDS+ 
Sbjct: 70  GRAEPNEIDELNILHATMLAMQRAVAGLSITPEFVLVDGNRCPK-LSMPSQAVVKGDSLV 128

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKV RDR M    K +P+YGF  H GYPTA H + + + G +  HR +F P
Sbjct: 129 QEISAASILAKVVRDREMVELDKVFPEYGFAKHKGYPTAYHLEKLAQFGATEFHRKSFAP 188

Query: 204 LRN 206
           +R 
Sbjct: 189 VRR 191


>gi|257465535|ref|ZP_05629906.1| ribonuclease HII [Actinobacillus minor 202]
 gi|257451195|gb|EEV25238.1| ribonuclease HII [Actinobacillus minor 202]
          Length = 196

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/184 (48%), Positives = 117/184 (63%), Gaps = 2/184 (1%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
           N   +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR +L E+I + A+ 
Sbjct: 8   NAKLIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLSEKKRLKLSEEIKAKALS 67

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            S+  A  + ID+ NI  AT+ A+  AVE L + P   L+DG  IP  L   A AV+KGD
Sbjct: 68  WSLGRAEPEEIDQLNILHATMLAMQRAVEGLHIQPDFVLVDGNRIPT-LNIPAQAVVKGD 126

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S+   I+AASI+AKV RD  M    K++P+YGF  H GYPT  H + + E G +  HR +
Sbjct: 127 SLVQEISAASILAKVARDLEMDELDKQFPEYGFAKHKGYPTKLHFEKLTELGATPFHRKS 186

Query: 201 FRPL 204
           F P+
Sbjct: 187 FAPV 190


>gi|303271053|ref|XP_003054888.1| ribonuclease HII [Micromonas pusilla CCMP1545]
 gi|226462862|gb|EEH60140.1| ribonuclease HII [Micromonas pusilla CCMP1545]
          Length = 256

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 83/200 (41%), Positives = 121/200 (60%), Gaps = 2/200 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P    E M  ++    V G+DE GRG LAGPVV AA +   + +   INDSK+++ + RE
Sbjct: 46  PSRAHEQMYWDQGKKIVCGVDEAGRGPLAGPVVAAACVFPEDLVIDAINDSKQMTEEDRE 105

Query: 70  ELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E+YE++  +  +  S+    H+ ID  NI +AT+ A+  +VE L       L+DG  +PE
Sbjct: 106 EVYEQLMENPEVLKSVCVIDHKEIDDINILEATMKAMRKSVEGLPTKADWVLVDGNRVPE 165

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            L  +A A++KGD+ S+ IAAAS++AKVTRDR+M    K++P+YGF  H GY    H   
Sbjct: 166 PLKGRAEAIVKGDAKSVCIAAASVLAKVTRDRMMVEIAKEHPEYGFAEHKGYGVKSHMAA 225

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           I E GP   HR+TF P++ +
Sbjct: 226 IHEHGPCPYHRMTFAPMKYM 245


>gi|301169801|emb|CBW29405.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Haemophilus
           influenzae 10810]
          Length = 197

 Score =  265 bits (679), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 87/187 (46%), Positives = 119/187 (63%), Gaps = 1/187 (0%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +    +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L E+I   A+
Sbjct: 6   QGYELIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKAL 65

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             ++  A    ID+ NI +A+L A+  AV++L++ P   L+DG  IP+DL   A AV+KG
Sbjct: 66  AWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKG 125

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DSI   I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR 
Sbjct: 126 DSIVAEISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAELGALPQHRR 185

Query: 200 TFRPLRN 206
           +F P++ 
Sbjct: 186 SFAPVKK 192


>gi|229843904|ref|ZP_04464045.1| ribonuclease HII [Haemophilus influenzae 6P18H1]
 gi|229812898|gb|EEP48586.1| ribonuclease HII [Haemophilus influenzae 6P18H1]
          Length = 197

 Score =  265 bits (679), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 85/187 (45%), Positives = 119/187 (63%), Gaps = 1/187 (0%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +    +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L ++I   A+
Sbjct: 6   QGYELIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALADEIKEKAL 65

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             ++  A    ID+ NI +A+L A+  AV++L++ P   L+DG  IP+DL   A AV+KG
Sbjct: 66  AWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKG 125

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DS+   I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR 
Sbjct: 126 DSLVAEISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAELGALPQHRR 185

Query: 200 TFRPLRN 206
           +F P++ 
Sbjct: 186 SFAPVKK 192


>gi|260767811|ref|ZP_05876746.1| ribonuclease HII [Vibrio furnissii CIP 102972]
 gi|260617320|gb|EEX42504.1| ribonuclease HII [Vibrio furnissii CIP 102972]
          Length = 206

 Score =  265 bits (679), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 91/203 (44%), Positives = 121/203 (59%), Gaps = 2/203 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           + ++P  EL           +AG+DEVGRG L G VV AA+ILDPN+   G+NDSKK+S 
Sbjct: 1   MAKKPEKELPPFEIPSGYHLIAGVDEVGRGPLVGDVVTAAVILDPNHPIEGLNDSKKLSE 60

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KKR  L  +I   A+  S+   S Q ID+ NI +AT+ A+  AV+ L + P   L+DG  
Sbjct: 61  KKRLALLPEIQQKALAWSVGRCSPQEIDELNIFQATMLAMQRAVDGLAIKPDLVLVDGNK 120

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           IP  LP  A AV+KGD     I+AASIIAKV RD+ M    K YP +GF  H GYPT  H
Sbjct: 121 IP-SLPMDAQAVVKGDLRVAQISAASIIAKVVRDQEMEELDKAYPQFGFAKHKGYPTKAH 179

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
            + I++ G    HR +F P++ +
Sbjct: 180 FEAIEQHGVIDQHRRSFGPVKRV 202


>gi|227432240|ref|ZP_03914236.1| ribonuclease HII [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227352013|gb|EEJ42243.1| ribonuclease HII [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 253

 Score =  265 bits (679), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 93/198 (46%), Positives = 123/198 (62%), Gaps = 3/198 (1%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F++E     +    +AG+DEVGRG LAGPVV AAIIL  +     + DSK++S KKR+E
Sbjct: 57  RFDIERQYWMQGYDLIAGVDEVGRGPLAGPVVAAAIILPHDFDVLDVIDSKQLSAKKRDE 116

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY+KI   AI I +       ID+ NI++A   A+  AV  L  IP + LID   +  DL
Sbjct: 117 LYDKIIEKAISIGVGRVEASIIDEINIYEAARVAMTEAVNQLAPIPEALLIDAMRLDLDL 176

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +IKGD+ S SI AASIIAKVTRDRLM     KYP YGF+ + GY T +H + IK
Sbjct: 177 P--QEFLIKGDARSNSIGAASIIAKVTRDRLMASYGLKYPGYGFEKNAGYGTKEHLEGIK 234

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + G + IHR TF P++++
Sbjct: 235 KIGITPIHRKTFAPIKDI 252


>gi|145634215|ref|ZP_01789926.1| ribonuclease HII [Haemophilus influenzae PittAA]
 gi|145268659|gb|EDK08652.1| ribonuclease HII [Haemophilus influenzae PittAA]
          Length = 197

 Score =  265 bits (679), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 87/187 (46%), Positives = 119/187 (63%), Gaps = 1/187 (0%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +    +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L E+I   A+
Sbjct: 6   QGYELIAGVDEVGRGPLVGAVVTAAVILDPNNPIQGLADSKKLSEKKRLALSEEIKEKAL 65

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             ++  A    ID+ NI +A+L A+  AV++L++ P   L+DG  IP+DL   A AV+KG
Sbjct: 66  AWALGRAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLAIPAQAVVKG 125

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DS+   I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR 
Sbjct: 126 DSLVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRR 185

Query: 200 TFRPLRN 206
           +F P++ 
Sbjct: 186 SFAPVKK 192


>gi|332360875|gb|EGJ38681.1| ribonuclease HII [Streptococcus sanguinis SK49]
          Length = 254

 Score =  265 bits (679), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 84/197 (42%), Positives = 121/197 (61%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +     +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  KK +++
Sbjct: 58  LRYEKELYKTGFRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQDI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ +   A+ + +    ++ ID+ NI++AT  A+  A+  L + P   LID   +  D+ 
Sbjct: 118 YQAVMDKALAVGVGLIDNEIIDQVNIYEATKLAMKEALSKLCLKPDYLLIDAMKL--DID 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD+LM    K+YP Y F  + GY T  H Q ++ 
Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSHLQGLER 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR TF P++++
Sbjct: 236 HGVTPIHRKTFEPVKSM 252


>gi|227513336|ref|ZP_03943385.1| ribonuclease HII [Lactobacillus buchneri ATCC 11577]
 gi|227083209|gb|EEI18521.1| ribonuclease HII [Lactobacillus buchneri ATCC 11577]
          Length = 255

 Score =  265 bits (679), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 82/200 (41%), Positives = 119/200 (59%), Gaps = 3/200 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F+ E     + +  VAG+DEVGRG LAGPVV  A IL  +     +NDSK+++ + R
Sbjct: 57  QSRFKYERSFWHRGVNYVAGVDEVGRGPLAGPVVACATILPRDFDLIQVNDSKQLTPEIR 116

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
             L  +I   AI I +    ++ ID+ NI++AT  A+  AV NL   P   ++D   IP 
Sbjct: 117 ARLAPQIKREAISIGLGLVDNKGIDRLNIYEATRVAMKQAVNNLTQQPDEIIVDAMQIP- 175

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +P     +IKGD+ S+S++AASI+AKV RD LM    ++YP+Y F  + GY TAKH   
Sbjct: 176 -VPIHQTRLIKGDAKSISVSAASIVAKVYRDNLMDQYAQQYPEYDFRHNAGYGTAKHLSA 234

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           +K+ G + IHR TF P++N 
Sbjct: 235 LKKYGATPIHRKTFAPIKNF 254


>gi|262170785|ref|ZP_06038463.1| ribonuclease HII [Vibrio mimicus MB-451]
 gi|261891861|gb|EEY37847.1| ribonuclease HII [Vibrio mimicus MB-451]
          Length = 206

 Score =  265 bits (679), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 119/202 (58%), Gaps = 2/202 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           + ++P  EL           +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S 
Sbjct: 1   MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSE 60

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KKR  L+ +I   A+  S+   S + ID+ NI +AT+ A+  AV  L V P   L+DG  
Sbjct: 61  KKRLALFPEIQEKALAWSVGRCSPREIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNK 120

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +P  LP  A AV+KGD     I+AASIIAKV RD  M    K+YP +GF  H GYPTA H
Sbjct: 121 VPT-LPMDAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAAH 179

Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206
              I++ G    HR +F P++ 
Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201


>gi|219871844|ref|YP_002476219.1| ribonuclease HII [Haemophilus parasuis SH0165]
 gi|219692048|gb|ACL33271.1| ribonuclease HII [Haemophilus parasuis SH0165]
          Length = 195

 Score =  265 bits (679), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/181 (47%), Positives = 115/181 (63%), Gaps = 2/181 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDPN    G+ DSKK+S K+R  L E+I + A+  S+
Sbjct: 9   FIAGVDEVGRGPLVGAVVTAAVILDPNQPIEGLADSKKLSEKRRLALAEEIKAKALCWSL 68

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID+ NI  AT+ A+  AV  L++ P   L+DG  IP  LP  A AV+KGDS+ 
Sbjct: 69  GRAEPDEIDQLNIFHATMLAMQRAVAGLRIQPDFVLVDGNRIPT-LPMPAQAVVKGDSLV 127

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKV RD+ M    K+YP+YGF  H GYPT  H + ++  G +  HR +F P
Sbjct: 128 AEISAASILAKVARDQEMDELDKQYPEYGFAQHKGYPTKLHFEKLESLGVTPYHRKSFAP 187

Query: 204 L 204
           +
Sbjct: 188 V 188


>gi|299770949|ref|YP_003732975.1| ribonuclease HII [Acinetobacter sp. DR1]
 gi|298701037|gb|ADI91602.1| ribonuclease HII [Acinetobacter sp. DR1]
          Length = 188

 Score =  265 bits (679), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 82/184 (44%), Positives = 117/184 (63%), Gaps = 1/184 (0%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             +AG+DE GRG L G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I   A+  S
Sbjct: 1   MFIAGVDEAGRGPLVGSVVAAAVILDPNNPIEGLNDSKKLTEKKREKLFIEIQEKALAWS 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+ A+H  ID+ NI +AT  A+  AV+ L+  P+  ++DG  IP+ +     A++ GD+ 
Sbjct: 61  IAEATHAEIDELNILQATFLAMQRAVDGLKAQPQKVIVDGNQIPKGIIIPCEAIVGGDAS 120

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRDR M    ++YP +GF  H GYPT  H + I   G    HR ++ 
Sbjct: 121 HPEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIATHGVIDQHRRSYA 180

Query: 203 PLRN 206
           P++ 
Sbjct: 181 PVKR 184


>gi|148826326|ref|YP_001291079.1| ribonuclease HII [Haemophilus influenzae PittEE]
 gi|166225190|sp|A5UD45|RNH2_HAEIE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|148716486|gb|ABQ98696.1| ribonuclease HII [Haemophilus influenzae PittEE]
          Length = 197

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 86/187 (45%), Positives = 119/187 (63%), Gaps = 1/187 (0%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +    +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L ++I   A+
Sbjct: 6   QGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALADEIKEKAL 65

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             ++  A    ID+ NI +A+L A+  AV++L++ P   L+DG  IP+DL   A AV+KG
Sbjct: 66  AWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKG 125

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DSI   I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR 
Sbjct: 126 DSIVAEISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAELGALPQHRR 185

Query: 200 TFRPLRN 206
           +F P++ 
Sbjct: 186 SFAPVKK 192


>gi|19746108|ref|NP_607244.1| ribonuclease HII [Streptococcus pyogenes MGAS8232]
 gi|94994428|ref|YP_602526.1| ribonuclease HII [Streptococcus pyogenes MGAS10750]
 gi|32171675|sp|Q8P109|RNH2_STRP8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166226661|sp|Q1J6K1|RNH2_STRPF RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|19748282|gb|AAL97743.1| putative ribonuclease HII [Streptococcus pyogenes MGAS8232]
 gi|94547936|gb|ABF37982.1| Ribonuclease HII [Streptococcus pyogenes MGAS10750]
          Length = 263

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 84/200 (42%), Positives = 121/200 (60%), Gaps = 6/200 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +K    +AGIDEVGRG LAGPVV A +IL       G+NDSKKI   K E +
Sbjct: 59  LSYEKALYKKGYQAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKAKHETI 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127
           Y+ +   A+ I I    +Q ID+ NI++AT  A+  A++ L+     P   LID  ++  
Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTL-- 176

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           D+     ++IKGD+ SLSIAAASI+AKVTRD++M    + +P YGF  + GY T +H Q 
Sbjct: 177 DIAISQQSIIKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQG 236

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           +K  G + IHR +F P++++
Sbjct: 237 LKAYGITPIHRKSFEPVKSM 256


>gi|309807515|ref|ZP_07701472.1| ribonuclease HII [Lactobacillus iners LactinV 01V1-a]
 gi|308169242|gb|EFO71303.1| ribonuclease HII [Lactobacillus iners LactinV 01V1-a]
          Length = 250

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 94/202 (46%), Positives = 128/202 (63%), Gaps = 4/202 (1%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           +  +  F  E     +N   VAG+DEVGRG LAGPVV AA+ILD N     +NDSKK++ 
Sbjct: 50  LEFKTRFSYEKEFWCQN-KLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKKLTP 108

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KKR EL+  I   A+ +S+  A++  IDK NI++A   A+  AV+ L+V P + L+D   
Sbjct: 109 KKRNELFPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVDAMD 168

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +P DLP     +I+GDS S SIAAASI+AKV RDRLM    + YP+Y F  + GY TAKH
Sbjct: 169 VPIDLP--QLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGEIYPEYDFAHNAGYGTAKH 226

Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206
              +K+ GP+ IHR +F P+ +
Sbjct: 227 LSALKQYGPTPIHRFSFEPVSS 248


>gi|258621010|ref|ZP_05716044.1| ribonuclease HII [Vibrio mimicus VM573]
 gi|258586398|gb|EEW11113.1| ribonuclease HII [Vibrio mimicus VM573]
          Length = 206

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 119/202 (58%), Gaps = 2/202 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           + ++P  EL           +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S 
Sbjct: 1   MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSE 60

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KKR  L+ +I   A+  S+   S + ID+ NI +AT+ A+  AV  L V P   L+DG  
Sbjct: 61  KKRLALFPEIQEKALAWSVGRCSPREIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNK 120

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +P  LP  A AV+KGD     I+AASIIAKV RD  M    K+YP +GF  H GYPTA H
Sbjct: 121 VPT-LPTDAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAAH 179

Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206
              I++ G    HR +F P++ 
Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201


>gi|323127302|gb|ADX24599.1| ribonuclease HII [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 256

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 81/200 (40%), Positives = 121/200 (60%), Gaps = 6/200 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++    +AGIDEVGRG LAGPVV A +IL  +    G+NDSKKI   K E +
Sbjct: 59  LSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKSKHETI 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127
           Y+ +   A+ I I    +Q ID+ NI++AT  A+  A++ L+     P   LID  ++  
Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTL-- 176

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           D+     ++IKGD+ SLSIAAASI+AKVTRD++M    + +P YGF  + GY T +H   
Sbjct: 177 DIAIPQQSIIKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNSGYGTKEHLDG 236

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           ++  G + IHR +F P++++
Sbjct: 237 LRTHGITPIHRKSFEPIKSM 256


>gi|121586247|ref|ZP_01676037.1| ribonuclease HII [Vibrio cholerae 2740-80]
 gi|121549513|gb|EAX59539.1| ribonuclease HII [Vibrio cholerae 2740-80]
          Length = 206

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 92/202 (45%), Positives = 123/202 (60%), Gaps = 2/202 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           + ++P  EL           +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S 
Sbjct: 1   MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSE 60

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KKR  L+ +I   A+  ++   S Q ID+ NI +AT+ A+  A+  L+V P   LIDG  
Sbjct: 61  KKRLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAIAGLRVQPDLVLIDGNK 120

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           IP+ LP +A AV+KGD     I+AASIIAKV RD+ M    K+YP +GF  H GYPTA H
Sbjct: 121 IPK-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179

Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206
              I++ G    HR +F P++ 
Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201


>gi|332360459|gb|EGJ38270.1| ribonuclease HII [Streptococcus sanguinis SK355]
          Length = 254

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 85/197 (43%), Positives = 121/197 (61%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +     +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  KK +E+
Sbjct: 58  LRYEKELYQAGYLAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+++   A+ + I     + ID+ NI++AT  A+  A+  L + P   LID   +  D+ 
Sbjct: 118 YKEVMDKALAVGIGLMDSEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKL--DVE 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAAS++AKVTRD+LM    K+YP Y F  + GY T  H Q ++ 
Sbjct: 176 IPQESIIKGDANSLSIAAASVVAKVTRDKLMADYDKEYPGYDFAKNAGYGTKSHLQGLER 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR TF P++++
Sbjct: 236 NGVTPIHRKTFEPVKSM 252


>gi|329921301|ref|ZP_08277739.1| ribonuclease HII [Lactobacillus iners SPIN 1401G]
 gi|328934593|gb|EGG31097.1| ribonuclease HII [Lactobacillus iners SPIN 1401G]
          Length = 250

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 94/197 (47%), Positives = 126/197 (63%), Gaps = 4/197 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E     +N   VAG+DEVGRG LAGPVV AA+ILD N     +NDSKK++ KKR E
Sbjct: 55  RFSYEKEFWCQN-KLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKKLTPKKRNE 113

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L+  I   A+ +S+  A++  IDK NI++A   A+  AV+ L+V P + L+D   +P DL
Sbjct: 114 LFPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVDAMDVPVDL 173

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +I+GDS S SIAAASI+AKV RDRLM    + YP+Y F  + GY TAKH   +K
Sbjct: 174 P--QLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGTAKHLSALK 231

Query: 190 EKGPSCIHRLTFRPLRN 206
           + GP+ IHR +F P+ +
Sbjct: 232 QYGPTPIHRFSFEPVSS 248


>gi|309809305|ref|ZP_07703174.1| ribonuclease HII [Lactobacillus iners SPIN 2503V10-D]
 gi|325911988|ref|ZP_08174390.1| ribonuclease HII [Lactobacillus iners UPII 143-D]
 gi|308170418|gb|EFO72442.1| ribonuclease HII [Lactobacillus iners SPIN 2503V10-D]
 gi|325476173|gb|EGC79337.1| ribonuclease HII [Lactobacillus iners UPII 143-D]
          Length = 250

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 94/197 (47%), Positives = 126/197 (63%), Gaps = 4/197 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E     +N   VAG+DEVGRG LAGPVV AA+ILD N     +NDSKK++ KKR E
Sbjct: 55  RFSYEKEFWCQN-KLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKKLTPKKRNE 113

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L+  I   A+ +S+  A++  IDK NI++A   A+  AV+ L+V P + L+D   +P DL
Sbjct: 114 LFPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVDAMDVPVDL 173

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +I+GDS S SIAAASI+AKV RDRLM    + YP+Y F  + GY TAKH   +K
Sbjct: 174 P--QLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGTAKHLSALK 231

Query: 190 EKGPSCIHRLTFRPLRN 206
           + GP+ IHR +F P+ +
Sbjct: 232 QYGPTPIHRFSFEPVSS 248


>gi|293608749|ref|ZP_06691052.1| ribonuclease HII [Acinetobacter sp. SH024]
 gi|292829322|gb|EFF87684.1| ribonuclease HII [Acinetobacter sp. SH024]
          Length = 189

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 83/185 (44%), Positives = 118/185 (63%), Gaps = 1/185 (0%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81
           M  +AG+DE GRG L G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I   A+  
Sbjct: 1   MMFIAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAW 60

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           SI+ A+H  ID+ NI +AT  A+  AV+ L+  P+  ++DG  IP+ +     A++ GD+
Sbjct: 61  SIAEATHAEIDELNILQATFLAMQRAVDGLKTQPQKVIVDGNQIPKGIIIPCEAIVGGDA 120

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
               I+AASI+AKVTRDR M    ++YP +GF  H GYPT  H + I   G    HR ++
Sbjct: 121 SHAEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAVHGVIDQHRRSY 180

Query: 202 RPLRN 206
            P++ 
Sbjct: 181 APVKR 185


>gi|259046715|ref|ZP_05737116.1| ribonuclease HII [Granulicatella adiacens ATCC 49175]
 gi|259036611|gb|EEW37866.1| ribonuclease HII [Granulicatella adiacens ATCC 49175]
          Length = 256

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 89/210 (42%), Positives = 124/210 (59%), Gaps = 7/210 (3%)

Query: 2   FCNSIPERPHFE----LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI 57
           F        HFE     E   ++K    +AGIDEVGRG LAGPVV AA+IL       G+
Sbjct: 46  FAKKAERAAHFEEMQSFERAAQQKGYRMIAGIDEVGRGPLAGPVVAAAVILPEGMEDIGL 105

Query: 58  NDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116
           +DSKK+S K+REE++E I   A+ I I       IDK NI++A+  A+  A+E L   P 
Sbjct: 106 DDSKKLSAKRREEIFEMIKEQAVAIGIGIVDAFTIDKINIYEASKVAMKRAIELLPEQPD 165

Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
             LID   +   +P     +IKGD+ S+SIAAASI+AK  RD++M+   + YP YGF  +
Sbjct: 166 YLLIDAMRLDTGIP--QEGIIKGDAKSISIAAASIVAKEVRDQMMKDYEQLYPGYGFAQN 223

Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
            GY T  H + +++ GP+ IHR+TF P++ 
Sbjct: 224 AGYGTKAHIEGLEKLGPTPIHRMTFAPVKE 253


>gi|327474218|gb|EGF19625.1| ribonuclease HII [Streptococcus sanguinis SK408]
          Length = 254

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 85/197 (43%), Positives = 120/197 (60%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +     +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  KK +E+
Sbjct: 58  LRYEKELYQAGYQRIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ +   A+ + I     + ID+ NI++AT  A+  A+  L + P   LID   +  D+ 
Sbjct: 118 YQAVMDKALAVGIGLMDSEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKL--DVE 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD+LM    K++P Y F  + GY T  H Q ++ 
Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMTDYDKEFPGYDFAQNAGYGTKSHLQGLER 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR TF P++++
Sbjct: 236 NGVTPIHRKTFEPVKSM 252


>gi|212710383|ref|ZP_03318511.1| hypothetical protein PROVALCAL_01443 [Providencia alcalifaciens DSM
           30120]
 gi|212686965|gb|EEB46493.1| hypothetical protein PROVALCAL_01443 [Providencia alcalifaciens DSM
           30120]
          Length = 196

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 89/183 (48%), Positives = 118/183 (64%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKRE+L+++I   A+   I
Sbjct: 10  LIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKREKLFDEIKEKALCWCI 69

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID+ NI  AT+ A+  AVE L + P   L+DG   P+ L   + AV+KGDS+ 
Sbjct: 70  GRAEPEEIDQLNILHATMLAMQRAVEGLLIKPEFVLVDGNRCPK-LDMPSQAVVKGDSLV 128

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKV RDR M    K +P+YGF  H GYPTA H + + E G +  HR +F P
Sbjct: 129 QEISAASILAKVVRDREMVELDKAFPEYGFAKHKGYPTAYHLEKLAEFGATEFHRKSFAP 188

Query: 204 LRN 206
           +R 
Sbjct: 189 VRR 191


>gi|322387852|ref|ZP_08061460.1| ribonuclease HII [Streptococcus infantis ATCC 700779]
 gi|321141354|gb|EFX36851.1| ribonuclease HII [Streptococcus infantis ATCC 700779]
          Length = 259

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 87/195 (44%), Positives = 124/195 (63%), Gaps = 3/195 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  +  + +  +AG+DEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK EE+
Sbjct: 58  LSYEKELYIQGINLIAGVDEVGRGPLAGPVVAAAVILPQNCKIKGLNDSKKIPKKKHEEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ +  +A+ I I    +  ID+ NI++AT  A+  A+  L+  P   LID   +  DLP
Sbjct: 118 FQAVKENALAIGIGIMDNHVIDQVNIYEATKLAMNEAISQLEPQPEHLLIDAMKL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASIIAKVTRD++M    +++P Y F  + GY TAKH + I++
Sbjct: 176 ISQTSIIKGDANSLSIAAASIIAKVTRDKIMANYDEEFPGYDFAQNAGYGTAKHIEGIEK 235

Query: 191 KGPSCIHRLTFRPLR 205
            G + IHR +F P++
Sbjct: 236 HGVTPIHRTSFEPIK 250


>gi|307244937|ref|ZP_07527034.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307247112|ref|ZP_07529164.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|307253891|ref|ZP_07535743.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258345|ref|ZP_07540086.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306854102|gb|EFM86310.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306856361|gb|EFM88512.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|306863095|gb|EFM95037.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867529|gb|EFM99376.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 186

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 87/183 (47%), Positives = 117/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+IL PNN   G+ DSKK+S KKR  L E+I + A+  S+ 
Sbjct: 2   IAGVDEVGRGPLVGAVVTAAVILAPNNPIEGLADSKKLSEKKRLLLAEEIKAKALCWSLG 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A  + ID+ NI  AT+ A+  AV  L + P   L+DG  IP  LP  A AVIKGDS+  
Sbjct: 62  RAEPEEIDRLNILHATMLAMQRAVAGLNIQPDFVLVDGNRIPT-LPMPAQAVIKGDSLVA 120

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M     +YP+YGF  H GYPT  H + +++ G +  HR +F P+
Sbjct: 121 EISAASILAKVARDQEMAELDVQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKSFAPV 180

Query: 205 RNL 207
           + +
Sbjct: 181 KKI 183


>gi|315633618|ref|ZP_07888908.1| ribonuclease HII [Aggregatibacter segnis ATCC 33393]
 gi|315477660|gb|EFU68402.1| ribonuclease HII [Aggregatibacter segnis ATCC 33393]
          Length = 199

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 85/195 (43%), Positives = 120/195 (61%), Gaps = 1/195 (0%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
           ++  V  +    +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L E
Sbjct: 1   MDKFVYPQGYALIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLLLAE 60

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   A+  ++  A    ID+ NI  A++ A+  AV++L++ P   L+DG  IP +L   
Sbjct: 61  EIKQKALAWALGRAEPHEIDELNILHASMLAMERAVKHLKIQPHFVLVDGNRIPSNLSIP 120

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
           A AV+KGD++   I+AASI+AKV RD+ M    ++YP Y F  H GYPT  H + I E G
Sbjct: 121 AQAVVKGDALVAEISAASILAKVARDQEMLELDQQYPQYAFAQHKGYPTKLHLEKIAEFG 180

Query: 193 PSCIHRLTFRPLRNL 207
               +R +F P++ L
Sbjct: 181 LLPQYRRSFAPVKKL 195


>gi|50914225|ref|YP_060197.1| ribonuclease HII [Streptococcus pyogenes MGAS10394]
 gi|68053078|sp|Q5XC49|RNH2_STRP6 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|50903299|gb|AAT87014.1| Ribonuclease HII [Streptococcus pyogenes MGAS10394]
          Length = 263

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 83/200 (41%), Positives = 121/200 (60%), Gaps = 6/200 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +K    +AGIDEVGRG LAGPVV A +IL       G+NDSKKI   K E +
Sbjct: 59  LSYEKALYKKGYQAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKAKHETI 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127
           Y+ +   A+ I I    +Q ID+ NI++AT  A+  A++ L+     P   LID  ++  
Sbjct: 119 YQAVKEQALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTL-- 176

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           D+     +++KGD+ SLSIAAASI+AKVTRD++M    + +P YGF  + GY T +H Q 
Sbjct: 177 DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQG 236

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           +K  G + IHR +F P++++
Sbjct: 237 LKAYGITPIHRKSFEPVKSM 256


>gi|121726559|ref|ZP_01679808.1| ribonuclease HII [Vibrio cholerae V52]
 gi|262189887|ref|ZP_06048211.1| ribonuclease HII [Vibrio cholerae CT 5369-93]
 gi|121631012|gb|EAX63391.1| ribonuclease HII [Vibrio cholerae V52]
 gi|262034231|gb|EEY52647.1| ribonuclease HII [Vibrio cholerae CT 5369-93]
          Length = 206

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 123/202 (60%), Gaps = 2/202 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           + ++P  EL           +AG+DEVGRG L G VV AA+ILDP+    G+NDSKK+S 
Sbjct: 1   MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPHRPIMGLNDSKKLSE 60

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KKR  L+ +I   A+  ++   S Q ID+ NI +AT+ A+  AV  L++ P   LIDG  
Sbjct: 61  KKRLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK 120

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           IP+ LP +A AV+KGD     I+AASIIAKV RD+ M    K+YP +GF  H GYPTA H
Sbjct: 121 IPK-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179

Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206
              I++ G    HR +F P++ 
Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201


>gi|161507470|ref|YP_001577424.1| ribonuclease HII [Lactobacillus helveticus DPC 4571]
 gi|172048283|sp|A8YV45|RNH2_LACH4 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|160348459|gb|ABX27133.1| ribonuclease HII [Lactobacillus helveticus DPC 4571]
          Length = 250

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 94/198 (47%), Positives = 124/198 (62%), Gaps = 4/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E    +K    VAG+DEVGRG LAGPVV AA+I+D N     +NDSKK+S +KR +
Sbjct: 54  RFSYEKQFWQKG-ELVAGVDEVGRGPLAGPVVTAAVIIDHNFDLLEVNDSKKLSPEKRLQ 112

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY KI S A+ + I   S   ID+ NI++A   A+  AV+ L V P + L+D  ++P DL
Sbjct: 113 LYPKILSEAVSVGIGVKSAAVIDQINIYEADRQAMAQAVKALDVKPNALLVDAMNVPVDL 172

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +IKGD+ S SIAAASI+AKV RD+LM    K YP YGF  + GY T +H   +K
Sbjct: 173 P--QIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFPRNAGYGTKEHIDALK 230

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + GP+ IHR TF P+ + 
Sbjct: 231 KYGPTPIHRKTFAPVSDF 248


>gi|33152162|ref|NP_873515.1| ribonuclease HII [Haemophilus ducreyi 35000HP]
 gi|39932311|sp|Q7VMF2|RNH2_HAEDU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|33148384|gb|AAP95904.1| ribonuclease HII [Haemophilus ducreyi 35000HP]
          Length = 197

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 83/188 (44%), Positives = 115/188 (61%), Gaps = 2/188 (1%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
            N   +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S KKR  L  +I   A+
Sbjct: 8   HNANLIAGVDEVGRGPLVGAVVTAAVILDPQQPILGLADSKKLSEKKRILLATEIKQKAL 67

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             S+  A  + ID+ NI  AT+ A+  A+  L + P   L+DG  IP  L   A A++KG
Sbjct: 68  CWSLGRAEAEEIDQLNILHATMLAMQRAINALTIQPDFVLVDGNRIP-SLNMPAQAIVKG 126

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DS+   I+AASI+AKV RD  M+I  +++P+YGF  H GYPT  H + + + G +  HR 
Sbjct: 127 DSLVAEISAASILAKVARDHEMQILDQQFPEYGFAQHKGYPTKLHIEKLAQFGATPFHRK 186

Query: 200 TFRPLRNL 207
           +F P+R +
Sbjct: 187 SFAPVRKI 194


>gi|260557476|ref|ZP_05829691.1| ribonuclease HII [Acinetobacter baumannii ATCC 19606]
 gi|260409102|gb|EEX02405.1| ribonuclease HII [Acinetobacter baumannii ATCC 19606]
          Length = 188

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 85/184 (46%), Positives = 117/184 (63%), Gaps = 1/184 (0%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DE GRG L G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I   A+  S
Sbjct: 1   MFVAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWS 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+ A+H  ID+ NI +AT  A+  AVE L+  P+  ++DG  IP+ +     A+I GD+ 
Sbjct: 61  IAEATHAEIDELNILQATFLAMQRAVEGLKTQPQKVIVDGNQIPKGIIIPCEAIIGGDAS 120

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRDR M    ++YP +GF  H GYPT  H + I   G    HR ++ 
Sbjct: 121 HAEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYA 180

Query: 203 PLRN 206
           P++ 
Sbjct: 181 PVKR 184


>gi|240947970|ref|ZP_04752396.1| ribonuclease HII [Actinobacillus minor NM305]
 gi|240297726|gb|EER48187.1| ribonuclease HII [Actinobacillus minor NM305]
          Length = 196

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 88/184 (47%), Positives = 116/184 (63%), Gaps = 2/184 (1%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
           N   +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR +L E+I + A+ 
Sbjct: 8   NAKLIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLSEKKRLKLAEEIKAKALS 67

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            S+  A  + ID+ NI  AT+ A+  AV  L + P   L+DG  IP  L   A AV+KGD
Sbjct: 68  WSLGRAEPEEIDQLNILHATMLAMQRAVAGLHIQPDFVLVDGNRIPT-LSMPAQAVVKGD 126

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S+   I+AASI+AKV RD  M    K++P+YGF  H GYPT  H + + E G +  HR +
Sbjct: 127 SLVQEISAASILAKVARDLEMDELDKQFPEYGFAKHKGYPTKLHFEKLTELGATPFHRKS 186

Query: 201 FRPL 204
           F P+
Sbjct: 187 FAPV 190


>gi|323466644|gb|ADX70331.1| Ribonuclease HII [Lactobacillus helveticus H10]
          Length = 250

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 95/198 (47%), Positives = 124/198 (62%), Gaps = 4/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E    +K    VAG+DEVGRG LAGPVV AA+I+D N     +NDSKK+S +KR +
Sbjct: 54  RFSYEKQFWQKG-ELVAGVDEVGRGPLAGPVVTAAVIIDHNFDLLEVNDSKKLSPEKRLQ 112

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY KI S AI + I   S   ID+ NI++A   A+  AV+ L V P + L+D  ++P DL
Sbjct: 113 LYPKILSEAISVGIGVKSAAVIDQINIYEADRQAMAQAVKALDVKPNALLVDAMNVPVDL 172

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +IKGD+ S SIAAASI+AKV RD+LM    K YP YGF  + GY T +H   +K
Sbjct: 173 P--QIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFPRNAGYGTKEHIDALK 230

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + GP+ IHR TF P+ + 
Sbjct: 231 KYGPTPIHRKTFAPVSDF 248


>gi|331081970|ref|ZP_08331098.1| hypothetical protein HMPREF0992_00022 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330405565|gb|EGG85095.1| hypothetical protein HMPREF0992_00022 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 256

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 89/190 (46%), Positives = 122/190 (64%), Gaps = 4/190 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E          + GIDEVGRG  AGPVV  A+IL P+     +NDSK++S K RE+LY
Sbjct: 60  EFEREYEHLGY--ICGIDEVGRGPFAGPVVAGAVILPPDCEILYVNDSKQLSEKMREQLY 117

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           ++I   A+ +++  AS Q ID+ NI +AT +A+  AV  L V P+  L D  +IP+ +  
Sbjct: 118 DEIMEKAVSVAVGYASPQRIDEINILQATYEAMREAVSKLAVTPQILLNDAVTIPQ-ITI 176

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +IKGD+ S+SIAAASI+AKVTRDRLMR   K  P+YGF S+ GY + +H + IK+ 
Sbjct: 177 PQVPIIKGDAKSISIAAASIVAKVTRDRLMREYDKIMPEYGFASNKGYGSKEHIEAIKKY 236

Query: 192 GPSCIHRLTF 201
           GP+ IHR +F
Sbjct: 237 GPTPIHRRSF 246


>gi|71910696|ref|YP_282246.1| ribonuclease HII [Streptococcus pyogenes MGAS5005]
 gi|71853478|gb|AAZ51501.1| ribonuclease HII [Streptococcus pyogenes MGAS5005]
          Length = 263

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 83/200 (41%), Positives = 121/200 (60%), Gaps = 6/200 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +K    +AGIDEVGRG LAGPVV A +IL       G+NDSKKI   K E +
Sbjct: 59  LSYEKALYKKGYKAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKAKHETI 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127
           Y+ +   A+ I I    +Q ID+ NI++AT  A+  A++ L+     P   LID  ++  
Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTL-- 176

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           D+     +++KGD+ SLSIAAASI+AKVTRD++M    + +P YGF  + GY T +H Q 
Sbjct: 177 DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQG 236

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           +K  G + IHR +F P++++
Sbjct: 237 LKAYGITPIHRKSFEPVKSM 256


>gi|309804177|ref|ZP_07698255.1| ribonuclease HII [Lactobacillus iners LactinV 11V1-d]
 gi|308163760|gb|EFO66029.1| ribonuclease HII [Lactobacillus iners LactinV 11V1-d]
          Length = 250

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 94/197 (47%), Positives = 126/197 (63%), Gaps = 4/197 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E     +N   VAG+DEVGRG LAGPVV AA+ILD N     +NDSKK++ KKR E
Sbjct: 55  RFSYEKKFWCQN-KLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKKLTPKKRNE 113

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L+  I   A+ +S+  A++  IDK NI++A   A+  AV+ L+V P + L+D   +P DL
Sbjct: 114 LFPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVDAMDVPVDL 173

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +I+GDS S SIAAASI+AKV RDRLM    + YP+Y F  + GY TAKH   +K
Sbjct: 174 P--QLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGTAKHLSALK 231

Query: 190 EKGPSCIHRLTFRPLRN 206
           + GP+ IHR +F P+ +
Sbjct: 232 QYGPTPIHRFSFEPVSS 248


>gi|296876487|ref|ZP_06900538.1| ribonuclease H [Streptococcus parasanguinis ATCC 15912]
 gi|296432480|gb|EFH18276.1| ribonuclease H [Streptococcus parasanguinis ATCC 15912]
          Length = 255

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 88/197 (44%), Positives = 123/197 (62%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E     + M  +AG+DEVGRG LAGPVV AA+IL       G+NDSKKI   K +E+
Sbjct: 58  LAYEKECYARGMELIAGVDEVGRGPLAGPVVAAAVILPKACKIPGLNDSKKIPKSKHKEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           YE +  +A+ I I    +Q ID+ NI++AT  A+  A+  L+  P+  LID   +  DLP
Sbjct: 118 YEAVLQNAVAIGIGIKDNQVIDQVNIYEATKLAMMEAIGQLEPQPQHLLIDAMKL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD++M    K+YP Y F  + GY TAKH   + +
Sbjct: 176 ISQISIIKGDANSLSIAAASIVAKVTRDQMMEEFDKEYPGYDFAQNAGYGTAKHLAGLDK 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR +F P++++
Sbjct: 236 LGVTPIHRRSFEPVKSM 252


>gi|253988139|ref|YP_003039495.1| ribonuclease HII [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253779589|emb|CAQ82750.1| ribonuclease HII [Photorhabdus asymbiotica]
          Length = 196

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 90/183 (49%), Positives = 117/183 (63%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP+    G+ DSKK+S K+REELY +IT  A+  S+
Sbjct: 11  LIAGVDEVGRGPLVGAVVTAAVILDPSRPIAGLADSKKLSEKRREELYLEITEKALCWSL 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID+ NI  AT+ A+  AV  L + P   LIDG   PE LP  A AVIKGD + 
Sbjct: 71  GRAEPEEIDQLNILHATMLAMQRAVAGLSISPEYVLIDGNRCPE-LPMPAQAVIKGDGLV 129

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M    + +P+YGF  H GYPTA H + +   G +  HR +F P
Sbjct: 130 AEISAASIVAKVTRDREMVELDQLFPEYGFAKHKGYPTALHLEKLVLLGATKHHRKSFAP 189

Query: 204 LRN 206
           ++ 
Sbjct: 190 VKR 192


>gi|90413543|ref|ZP_01221534.1| ribonuclease HII [Photobacterium profundum 3TCK]
 gi|90325475|gb|EAS41958.1| ribonuclease HII [Photobacterium profundum 3TCK]
          Length = 201

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 87/184 (47%), Positives = 118/184 (64%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L+++I   A+  S+
Sbjct: 15  LIAGVDEVGRGPLVGAVVTAAVILDPNNPIVGLTDSKKLSEKKRNVLFDEIKEKALAWSL 74

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
                + ID+ NI +AT+ A+  AV +L + P   LIDG  IP+ LP  A AV+KGD   
Sbjct: 75  GRCEPEEIDELNILQATMVAMQRAVADLNIQPDFVLIDGNKIPQ-LPMAAQAVVKGDLRV 133

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASIIAKVTRDR M +   ++P YGF  H GYPT  H + ++  G    HR +F+P
Sbjct: 134 AEISAASIIAKVTRDREMEVLDAQFPQYGFAKHKGYPTKAHFEALELHGAIEQHRKSFKP 193

Query: 204 LRNL 207
           ++ +
Sbjct: 194 VKRI 197


>gi|157692285|ref|YP_001486747.1| ribonuclease HII [Bacillus pumilus SAFR-032]
 gi|189043566|sp|A8FD70|RNH2_BACP2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157681043|gb|ABV62187.1| ribonuclease HII [Bacillus pumilus SAFR-032]
          Length = 254

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 84/197 (42%), Positives = 120/197 (60%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            + E   + +    +AGIDE GRG LAGPVV AA+IL  + +  G+NDSK++S KKR   
Sbjct: 58  LQFENNAKAQGYTCIAGIDEAGRGPLAGPVVAAAVILKDDTVLLGLNDSKQLSEKKRLAY 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I   A+ I I       ID+ NI++A+  A+  AVE L   P   LID  ++P  LP
Sbjct: 118 YDLIQKEALDIGIGIVDAATIDEINIYEASRLAMVRAVEQLAHTPDYLLIDAMTLP--LP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +IKGD+ S SIAA + IAKVTRD++M    ++YP+Y F+ H GY T +H   I+ 
Sbjct: 176 IHQENIIKGDAKSASIAAGACIAKVTRDQMMEEYGRQYPEYQFEKHKGYGTKEHLAAIQT 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHRL+F P++++
Sbjct: 236 HGAAPIHRLSFAPVKSV 252


>gi|184157471|ref|YP_001845810.1| ribonuclease HII [Acinetobacter baumannii ACICU]
 gi|239503491|ref|ZP_04662801.1| ribonuclease HII [Acinetobacter baumannii AB900]
 gi|332875053|ref|ZP_08442892.1| ribonuclease HII [Acinetobacter baumannii 6014059]
 gi|183209065|gb|ACC56463.1| Ribonuclease HII [Acinetobacter baumannii ACICU]
 gi|193076842|gb|ABO11570.2| RNAse HII [Acinetobacter baumannii ATCC 17978]
 gi|323517386|gb|ADX91767.1| ribonuclease HII [Acinetobacter baumannii TCDC-AB0715]
 gi|332736753|gb|EGJ67741.1| ribonuclease HII [Acinetobacter baumannii 6014059]
          Length = 188

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 84/184 (45%), Positives = 117/184 (63%), Gaps = 1/184 (0%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DE GRG L G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I   A+  S
Sbjct: 1   MFVAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWS 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+ A+H  ID+ NI +AT  A+  AVE L+  P+  ++DG  IP+ +     A++ GD+ 
Sbjct: 61  IAEATHAEIDELNILQATFLAMQRAVEGLKTQPQKVIVDGNQIPKGIIIPCEAIVGGDAS 120

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRDR M    ++YP +GF  H GYPT  H + I   G    HR ++ 
Sbjct: 121 HAEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYA 180

Query: 203 PLRN 206
           P++ 
Sbjct: 181 PVKR 184


>gi|307703411|ref|ZP_07640353.1| ribonuclease HII family protein [Streptococcus oralis ATCC 35037]
 gi|307622818|gb|EFO01813.1| ribonuclease HII family protein [Streptococcus oralis ATCC 35037]
          Length = 203

 Score =  264 bits (676), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 87/197 (44%), Positives = 123/197 (62%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ +  +AG+DEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK  E+
Sbjct: 2   LSYEKELYKQGLTLIAGVDEVGRGPLAGPVVAAAVILPKNCKIRGLNDSKKIPKKKHLEI 61

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y  +   A+ I I    +Q ID+ NI++AT  A+  A+  +   P   LID   +  +L 
Sbjct: 62  YHAVQDQALAIGIGIMDNQVIDQVNIYEATKLAMKEAISQVSPKPEHLLIDAMKL--ELS 119

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               A+IKGD+ SLSIAAASI+AKVTRD LM+   ++YP Y F ++ GY TAKH + +++
Sbjct: 120 IPQTAIIKGDANSLSIAAASIVAKVTRDELMKEYDQQYPGYDFTANAGYGTAKHLEGLEK 179

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR +F P++ L
Sbjct: 180 LGVTPIHRTSFEPVKTL 196


>gi|325689693|gb|EGD31697.1| ribonuclease HII [Streptococcus sanguinis SK115]
          Length = 254

 Score =  264 bits (676), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 85/197 (43%), Positives = 121/197 (61%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +     +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  KK +E+
Sbjct: 58  LRYEKELYQAGYRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ +   A+ + I    ++ ID+ NI++AT  A+  A+  L + P   LID   +  D+ 
Sbjct: 118 YQAVMDKALAVGIGLMDNEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKL--DVE 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD+LM    K++P Y F  + GY T  H Q ++ 
Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMTDYDKEFPGYDFAQNAGYGTKSHLQGLER 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR TF P++++
Sbjct: 236 NGVTPIHRKTFEPIKSM 252


>gi|325687470|gb|EGD29491.1| ribonuclease HII [Streptococcus sanguinis SK72]
          Length = 254

 Score =  264 bits (676), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 85/197 (43%), Positives = 121/197 (61%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +     +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  KK +E+
Sbjct: 58  LRYEKELYQAGHLAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+++   A+ + I     + ID+ NI++AT  A+  A+  L + P   LID   +  D+ 
Sbjct: 118 YKEVMDKALAVGIGLMDSEMIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKL--DVE 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD+LM    K++P Y F  + GY T  H Q ++ 
Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMTDYDKEFPGYDFAKNAGYGTKSHLQGLER 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR TF P++++
Sbjct: 236 NGVTPIHRKTFEPVKSM 252


>gi|94990506|ref|YP_598606.1| ribonuclease HII [Streptococcus pyogenes MGAS10270]
 gi|166226660|sp|Q1JGT2|RNH2_STRPD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|94544014|gb|ABF34062.1| Ribonuclease HII [Streptococcus pyogenes MGAS10270]
          Length = 263

 Score =  264 bits (676), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 82/200 (41%), Positives = 122/200 (61%), Gaps = 6/200 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++    +AGIDEVGRG LAGPVV A +IL  +    G+NDSKKI   K E +
Sbjct: 59  LSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKSKHETI 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127
           Y+ +   A+ I I    +Q ID+ NI++AT  A+  A++ L+     P   LID  ++  
Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTL-- 176

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           D+     +++KGD+ SLSIAAASI+AKVTRD++M    + +P YGF  + GY T +H Q 
Sbjct: 177 DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQG 236

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           +K  G + IHR +F P++++
Sbjct: 237 LKAYGITPIHRKSFEPVKSM 256


>gi|56964049|ref|YP_175780.1| ribonuclease HII [Bacillus clausii KSM-K16]
 gi|73917599|sp|Q5WFP1|RNH2_BACSK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|56910292|dbj|BAD64819.1| ribonuclease HII [Bacillus clausii KSM-K16]
          Length = 259

 Score =  264 bits (676), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 83/194 (42%), Positives = 116/194 (59%), Gaps = 3/194 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +  E  ++++    V G+DEVGRG LAGPV   A IL  +    G+ DSKK+S  KREE 
Sbjct: 57  WRYEQELKQRGYVAVCGVDEVGRGPLAGPVTACACILPDDFQLLGLTDSKKLSKAKREEY 116

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            + I+  A+  SI+S S   ID+ NI +AT  A+  A+  L       L+D   +  D+P
Sbjct: 117 AKMISEQAVAYSIASVSAAEIDEINILQATKKAMTKAINGLSQKTDHLLLDAVRL--DVP 174

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAA+S++AKV RDR M    + YP YGFD+H GY TA H Q ++ 
Sbjct: 175 IAQTSLIKGDAKSLSIAASSVLAKVWRDRYMEELAQTYPGYGFDTHAGYGTASHLQALRT 234

Query: 191 KGPSCIHRLTFRPL 204
            G +  HR +FRP+
Sbjct: 235 YGMTPEHRKSFRPV 248


>gi|262279707|ref|ZP_06057492.1| ribonuclease H [Acinetobacter calcoaceticus RUH2202]
 gi|262260058|gb|EEY78791.1| ribonuclease H [Acinetobacter calcoaceticus RUH2202]
          Length = 188

 Score =  264 bits (676), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 83/184 (45%), Positives = 118/184 (64%), Gaps = 1/184 (0%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             +AG+DE GRG L G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I   A+  S
Sbjct: 1   MFIAGVDEAGRGPLVGSVVAAAVILDPNNPIVGLNDSKKLTEKKREKLFIEIQEKALAWS 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+ A+H  ID+ NI +AT  A+  AV+ L+  P+  ++DG  IP+ +     A+I GD+ 
Sbjct: 61  IAEATHGEIDELNILQATFLAMQRAVDGLKTQPQKVIVDGNQIPKGIIIPCEAIIGGDAS 120

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRDR M+   ++YP +GF  H GYPT  H + I   G    HR ++ 
Sbjct: 121 HAEISAASILAKVTRDRQMQELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYA 180

Query: 203 PLRN 206
           P++ 
Sbjct: 181 PVKR 184


>gi|22126997|ref|NP_670420.1| ribonuclease HII [Yersinia pestis KIM 10]
 gi|45442560|ref|NP_994099.1| ribonuclease HII [Yersinia pestis biovar Microtus str. 91001]
 gi|51597304|ref|YP_071495.1| ribonuclease HII [Yersinia pseudotuberculosis IP 32953]
 gi|108806531|ref|YP_650447.1| ribonuclease HII [Yersinia pestis Antiqua]
 gi|108813102|ref|YP_648869.1| ribonuclease HII [Yersinia pestis Nepal516]
 gi|145598936|ref|YP_001163012.1| ribonuclease HII [Yersinia pestis Pestoides F]
 gi|149366941|ref|ZP_01888974.1| ribonuclease HII [Yersinia pestis CA88-4125]
 gi|153946846|ref|YP_001400011.1| ribonuclease HII [Yersinia pseudotuberculosis IP 31758]
 gi|162421227|ref|YP_001607758.1| ribonuclease HII [Yersinia pestis Angola]
 gi|165927101|ref|ZP_02222933.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165939835|ref|ZP_02228375.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011925|ref|ZP_02232823.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166211521|ref|ZP_02237556.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167400133|ref|ZP_02305651.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167419475|ref|ZP_02311228.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167425410|ref|ZP_02317163.1| ribonuclease HII [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167470459|ref|ZP_02335163.1| ribonuclease HII [Yersinia pestis FV-1]
 gi|186896409|ref|YP_001873521.1| ribonuclease HII [Yersinia pseudotuberculosis PB1/+]
 gi|218928226|ref|YP_002346101.1| ribonuclease HII [Yersinia pestis CO92]
 gi|229837765|ref|ZP_04457925.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis
           Pestoides A]
 gi|229840987|ref|ZP_04461146.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229843088|ref|ZP_04463238.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229903545|ref|ZP_04518658.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis
           Nepal516]
 gi|270487326|ref|ZP_06204400.1| ribonuclease HII [Yersinia pestis KIM D27]
 gi|294503075|ref|YP_003567137.1| ribonuclease HII [Yersinia pestis Z176003]
 gi|29427900|sp|Q8ZH54|RNH2_YERPE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|73917839|sp|Q667K3|RNH2_YERPS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|122980006|sp|Q1CFG1|RNH2_YERPN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|123245970|sp|Q1CAM0|RNH2_YERPA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166226669|sp|A4TL77|RNH2_YERPP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166991071|sp|A7FFI3|RNH2_YERP3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238687277|sp|A9R382|RNH2_YERPG RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238691336|sp|B2JZ20|RNH2_YERPB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|21960043|gb|AAM86671.1|AE013913_1 RNAse HII [Yersinia pestis KIM 10]
 gi|45437425|gb|AAS62976.1| ribonuclease HII [Yersinia pestis biovar Microtus str. 91001]
 gi|51590586|emb|CAH22227.1| ribonuclease HII [Yersinia pseudotuberculosis IP 32953]
 gi|108776750|gb|ABG19269.1| RNase HII [Yersinia pestis Nepal516]
 gi|108778444|gb|ABG12502.1| RNase HII [Yersinia pestis Antiqua]
 gi|115346837|emb|CAL19723.1| ribonuclease HII [Yersinia pestis CO92]
 gi|145210632|gb|ABP40039.1| RNase HII [Yersinia pestis Pestoides F]
 gi|149290555|gb|EDM40631.1| ribonuclease HII [Yersinia pestis CA88-4125]
 gi|152958341|gb|ABS45802.1| ribonuclease HII [Yersinia pseudotuberculosis IP 31758]
 gi|162354042|gb|ABX87990.1| ribonuclease HII [Yersinia pestis Angola]
 gi|165912238|gb|EDR30875.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. IP275]
 gi|165920997|gb|EDR38221.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989191|gb|EDR41492.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166207292|gb|EDR51772.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166962216|gb|EDR58237.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167050841|gb|EDR62249.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167055810|gb|EDR65594.1| ribonuclease HII [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|186699435|gb|ACC90064.1| ribonuclease HII/HIII [Yersinia pseudotuberculosis PB1/+]
 gi|229679315|gb|EEO75418.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis
           Nepal516]
 gi|229689964|gb|EEO82023.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229697353|gb|EEO87400.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229704142|gb|EEO91154.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis
           Pestoides A]
 gi|262361113|gb|ACY57834.1| ribonuclease HII [Yersinia pestis D106004]
 gi|262365353|gb|ACY61910.1| ribonuclease HII [Yersinia pestis D182038]
 gi|270335830|gb|EFA46607.1| ribonuclease HII [Yersinia pestis KIM D27]
 gi|294353534|gb|ADE63875.1| ribonuclease HII [Yersinia pestis Z176003]
 gi|320014192|gb|ADV97763.1| ribonuclease HII [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 198

 Score =  264 bits (676), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 86/184 (46%), Positives = 116/184 (63%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDPN    G+ DSKK+S K+R  LY++IT  A+  S+
Sbjct: 12  LIAGVDEVGRGPLVGAVVTAAVILDPNRPIVGLADSKKLSEKRRLSLYDEITEKALSWSL 71

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID+ NI  AT+ A+  AV  L ++P   LIDG   P+ L   + AV+KGDS  
Sbjct: 72  GRAEPEEIDQLNILHATMLAMQRAVSGLHIVPDYVLIDGNRCPK-LQMPSLAVVKGDSRV 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M      +P+YGF  H GYPTA H + +   G +  HR +F P
Sbjct: 131 AEISAASILAKVTRDREMTELDLLFPEYGFAQHKGYPTAFHLEKLAALGATVHHRRSFGP 190

Query: 204 LRNL 207
           ++ +
Sbjct: 191 VKRV 194


>gi|322411764|gb|EFY02672.1| ribonuclease HII [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 256

 Score =  264 bits (676), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 81/200 (40%), Positives = 121/200 (60%), Gaps = 6/200 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++    +AGIDEVGRG LAGPVV A +IL  +    G+NDSKKI   K E +
Sbjct: 59  LSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHFKIKGLNDSKKIPKAKHETI 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127
           Y+ +   A+ I I    +Q ID+ NI++AT  A+  A++ L+     P   LID  ++  
Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTL-- 176

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           D+     ++IKGD+ SLSIAAASI+AKVTRD++M    + +P YGF  + GY T +H   
Sbjct: 177 DIAIPQQSIIKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLDG 236

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           ++  G + IHR +F P++++
Sbjct: 237 LRTHGITPIHRKSFEPIKSM 256


>gi|229522192|ref|ZP_04411609.1| ribonuclease HII [Vibrio cholerae TM 11079-80]
 gi|229341117|gb|EEO06122.1| ribonuclease HII [Vibrio cholerae TM 11079-80]
          Length = 206

 Score =  264 bits (676), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 122/202 (60%), Gaps = 2/202 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           + ++P  EL           +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S 
Sbjct: 1   MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSE 60

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KKR  L+ +I   A+  ++   S Q ID+ NI +AT+ A+  AV  L++ P   LIDG  
Sbjct: 61  KKRLALFPEIQEKALAWAVGRCSTQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK 120

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
            P+ LP +A AV+KGD     I+AASIIAKV RD+ M    K+YP +GF  H GYPTA H
Sbjct: 121 TPK-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179

Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206
              I++ G    HR +F P++ 
Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201


>gi|312883822|ref|ZP_07743541.1| ribonuclease HII [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368571|gb|EFP96104.1| ribonuclease HII [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 202

 Score =  264 bits (676), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 90/186 (48%), Positives = 112/186 (60%), Gaps = 2/186 (1%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
               +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S KKR  L+ +I   A+ 
Sbjct: 13  GYQSIAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSEKKRLALFPEIKEKALA 72

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            SI   S   IDK NI  AT+ A+  A+ENL ++P  ALIDG   P  LP  A +V+KGD
Sbjct: 73  WSIGRCSPVEIDKLNILHATMVAMQRAIENLNIMPDLALIDGNRCPH-LPMAAQSVVKGD 131

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
                I+AASIIAKV RD  M      YP+YGF  H GYPT  H   I+  G    HR +
Sbjct: 132 LRVAEISAASIIAKVVRDSEMAQLDSLYPEYGFAQHKGYPTKAHLNAIEAHGVIEQHRKS 191

Query: 201 FRPLRN 206
           F+P++ 
Sbjct: 192 FKPVKR 197


>gi|153825313|ref|ZP_01977980.1| ribonuclease HII [Vibrio cholerae MZO-2]
 gi|183179455|ref|ZP_02957666.1| ribonuclease HII [Vibrio cholerae MZO-3]
 gi|229513888|ref|ZP_04403350.1| ribonuclease HII [Vibrio cholerae TMA 21]
 gi|297580889|ref|ZP_06942814.1| ribonuclease HII [Vibrio cholerae RC385]
 gi|149740997|gb|EDM55066.1| ribonuclease HII [Vibrio cholerae MZO-2]
 gi|183012866|gb|EDT88166.1| ribonuclease HII [Vibrio cholerae MZO-3]
 gi|229349069|gb|EEO14026.1| ribonuclease HII [Vibrio cholerae TMA 21]
 gi|297534715|gb|EFH73551.1| ribonuclease HII [Vibrio cholerae RC385]
          Length = 206

 Score =  264 bits (676), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 92/202 (45%), Positives = 122/202 (60%), Gaps = 2/202 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           + ++P  EL           +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S 
Sbjct: 1   MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSE 60

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KKR  L+ +I   A+  ++   S Q ID+ NI +AT+ A+  AV  L++ P   LIDG  
Sbjct: 61  KKRLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK 120

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           IP+ LP  A AV+KGD     I+AASIIAKV RD+ M    K+YP +GF  H GYPTA H
Sbjct: 121 IPK-LPMAAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179

Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206
              I++ G    HR +F P++ 
Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201


>gi|77457342|ref|YP_346847.1| ribonuclease HII [Pseudomonas fluorescens Pf0-1]
 gi|97189197|sp|Q3KH98|RNH2_PSEPF RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|77381345|gb|ABA72858.1| ribonuclease HII [Pseudomonas fluorescens Pf0-1]
          Length = 213

 Score =  264 bits (676), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 97/207 (46%), Positives = 127/207 (61%), Gaps = 6/207 (2%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           M   S+     F L A V E     VAG+DEVGRG L G VV AA+ILDPN    G+NDS
Sbjct: 1   MSKTSMQMGLDFTLVAEVEE----LVAGVDEVGRGPLCGAVVTAAVILDPNRPILGLNDS 56

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           KK++  KRE+LY++I   A+   I+ A  + ID+ NI  AT+ A+  AV  L + P+ A+
Sbjct: 57  KKLTEAKREKLYDEICEKALSWCIARAEVEEIDELNILHATMLAMQRAVAGLHIQPKLAM 116

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           IDG   P+ LP ++ AV+KGDS   +IAAASI+AKV+RDR M      YP YG   H GY
Sbjct: 117 IDGNRCPK-LPMRSEAVVKGDSKVPAIAAASILAKVSRDREMAAFELIYPGYGISGHKGY 175

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           PT  H + +   GP+ IHR +F P+R 
Sbjct: 176 PTPVHLEALVRLGPTPIHRRSFAPVRQ 202


>gi|311030147|ref|ZP_07708237.1| Ribonuclease H [Bacillus sp. m3-13]
          Length = 256

 Score =  264 bits (676), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 82/195 (42%), Positives = 121/195 (62%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  + +K    +AGIDEVGRG LAGPVV AA+IL  +    G+ DSKK++ +KRE  + 
Sbjct: 62  YERPLWDKGCRYIAGIDEVGRGPLAGPVVAAAVILPEDFHLPGLTDSKKLNAQKREHFFR 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            +   AI   I     + ID+ NI++AT  A+  AV+NL   P   LID   +  DL  +
Sbjct: 122 YVKEHAISYGIGIIDSREIDQVNIYEATKLAMVQAVKNLHHTPEHLLIDAMKL--DLDIE 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SIAAAS++AK TRD  M+   +++PDYGFD ++GY T +H   ++E G
Sbjct: 180 QTSIIKGDATSISIAAASVLAKETRDTYMKNLAQEFPDYGFDKNMGYGTPEHLLALQETG 239

Query: 193 PSCIHRLTFRPLRNL 207
            +  HR +F P++ +
Sbjct: 240 VTREHRQSFSPVKEM 254


>gi|319406927|emb|CBI80564.1| Ribonuclease HII [Bartonella sp. 1-1C]
          Length = 212

 Score =  264 bits (676), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 104/208 (50%), Positives = 144/208 (69%), Gaps = 4/208 (1%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           MF  S+  +P+F  E  +++K  + +AG+DEVGRG LAGPVV AA++LD + IP G+NDS
Sbjct: 1   MFNVSL--QPNFSYELDLQKKGFFYIAGVDEVGRGPLAGPVVTAAVVLDKDRIPEGLNDS 58

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           KK+S ++R  LY +I  +A+ +S++S   + IDK NI KATL+A+ H +  L +    AL
Sbjct: 59  KKLSSQQRNRLYYEILRNALAVSVASLCARTIDKSNIRKATLEAMRHCITGLAISAHYAL 118

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           IDGR IP +LPC A A+IKGD  S+SIAAASIIAKV RDR+M+ A + Y +YG + HVGY
Sbjct: 119 IDGRDIPSNLPCPAVALIKGDQSSVSIAAASIIAKVIRDRMMQYAGRVYQNYGLEKHVGY 178

Query: 180 PTAKHQQVIKEKGPS-CIHRLTFRPLRN 206
            T  H+  I + GP   +HR +F PL+ 
Sbjct: 179 GTVAHRAAIDKYGPIVRLHRYSFSPLKE 206


>gi|206890782|ref|YP_002248663.1| ribonuclease HII [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742720|gb|ACI21777.1| ribonuclease HII [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 201

 Score =  264 bits (676), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 89/198 (44%), Positives = 117/198 (59%), Gaps = 1/198 (0%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F  +   R +    +AGIDE GRG LAGPVV A +    +    GI DSK++SH++RE L
Sbjct: 4   FAFDESFRLQGYNLIAGIDEAGRGCLAGPVVAACVSFRDSVFIEGIKDSKELSHEQRESL 63

Query: 72  YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           +++I   A + I       ID+ NI +AT  A+  A ENL       LID   +P  L  
Sbjct: 64  FQEIIKHAFVGIGIVDVDLIDRVNILEATRLAMMEAFENLGREIELLLIDAVELPA-LKV 122

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              A+IKGD  S SIA+ASI+AKVTRDR+MR  H+ YP YGFD H GY T +H   +K+ 
Sbjct: 123 DQKALIKGDRKSASIASASIVAKVTRDRIMRQYHEAYPMYGFDKHKGYGTKEHLNALKKF 182

Query: 192 GPSCIHRLTFRPLRNLSV 209
           GP  IHR +F P+R L +
Sbjct: 183 GPCPIHRKSFSPVRELML 200


>gi|229528751|ref|ZP_04418141.1| ribonuclease HII [Vibrio cholerae 12129(1)]
 gi|229332525|gb|EEN98011.1| ribonuclease HII [Vibrio cholerae 12129(1)]
          Length = 206

 Score =  264 bits (676), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 123/202 (60%), Gaps = 2/202 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           + ++P  EL           +AG+DEVGRG L G VV AA+ILDP+    G+NDSKK+S 
Sbjct: 1   MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPHRPIVGLNDSKKLSE 60

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KKR  L+ +I   A+  ++   S Q ID+ NI +AT+ A+  AV  L++ P   LIDG  
Sbjct: 61  KKRLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK 120

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           IP+ LP +A AV+KGD     I+AASIIAKV RD+ M    K+YP +GF  H GYPTA H
Sbjct: 121 IPK-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179

Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206
              I++ G    HR +F P++ 
Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201


>gi|312959406|ref|ZP_07773923.1| ribonuclease HII [Pseudomonas fluorescens WH6]
 gi|311286123|gb|EFQ64687.1| ribonuclease HII [Pseudomonas fluorescens WH6]
          Length = 210

 Score =  264 bits (676), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 89/191 (46%), Positives = 120/191 (62%), Gaps = 2/191 (1%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76
            +  +    VAG+DEVGRG L G VV AA+ILDPN    G+NDSKK++  +RE+LY++I 
Sbjct: 10  SLVAQAHELVAGVDEVGRGPLCGAVVTAAVILDPNRPILGLNDSKKLTEARREKLYDEIC 69

Query: 77  SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135
             A+   I+ A  + ID+ NI  AT+ A+  AVE L + P+ A+IDG   P+ L   + A
Sbjct: 70  EKALSWHIARAEVEEIDQLNILHATMLAMQRAVEGLHITPKMAMIDGNRCPK-LAMPSEA 128

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           V+KGDS   +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ 
Sbjct: 129 VVKGDSKVPAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTP 188

Query: 196 IHRLTFRPLRN 206
           IHR +F P+R 
Sbjct: 189 IHRRSFAPVRQ 199


>gi|296133539|ref|YP_003640786.1| Ribonuclease H [Thermincola sp. JR]
 gi|296032117|gb|ADG82885.1| Ribonuclease H [Thermincola potens JR]
          Length = 259

 Score =  264 bits (675), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 87/196 (44%), Positives = 116/196 (59%), Gaps = 2/196 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            + E  +       VAGIDE GRG LAGPVV AA+IL   ++  G+NDSKK+S +KR EL
Sbjct: 62  LKYERELWAAGYTLVAGIDEAGRGPLAGPVVAAAVILKQGDLIEGLNDSKKLSPEKRSEL 121

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            E I   A+   I   S   ID+ NI++A L A+  AV  + + P   L+D  +IP  + 
Sbjct: 122 EEVIKERAVAYGIGIVSETEIDEMNIYQAALKAMRIAVAKISLKPEYLLVDAVTIP-GVS 180

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               A++ GD++S SIAAASI+AK TRDR+M      YP YGF  H GY TA H + +K+
Sbjct: 181 IPQKAIVHGDALSCSIAAASILAKETRDRIMTELDALYPHYGFAQHKGYATAFHLEALKK 240

Query: 191 KGPSCIHRLTFRPLRN 206
            GP  +HR TF  +R 
Sbjct: 241 YGPCPVHRKTFGQVRQ 256


>gi|260549960|ref|ZP_05824175.1| ribonuclease HII family protein [Acinetobacter sp. RUH2624]
 gi|260406952|gb|EEX00430.1| ribonuclease HII family protein [Acinetobacter sp. RUH2624]
          Length = 188

 Score =  264 bits (675), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 83/184 (45%), Positives = 117/184 (63%), Gaps = 1/184 (0%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DE GRG L G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I   A+  S
Sbjct: 1   MFVAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWS 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+ A+H  ID+ NI +AT  A+  AV+ L+  P+  ++DG  IP+ +     A++ GD+ 
Sbjct: 61  IAEATHAEIDELNILQATFLAMQRAVDGLKTQPQKVIVDGNQIPKGIIIPCEAIVGGDAS 120

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRDR M    ++YP +GF  H GYPT  H + I   G    HR ++ 
Sbjct: 121 HAEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYA 180

Query: 203 PLRN 206
           P++ 
Sbjct: 181 PVKR 184


>gi|167769415|ref|ZP_02441468.1| hypothetical protein ANACOL_00745 [Anaerotruncus colihominis DSM
           17241]
 gi|167668383|gb|EDS12513.1| hypothetical protein ANACOL_00745 [Anaerotruncus colihominis DSM
           17241]
          Length = 200

 Score =  264 bits (675), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 88/199 (44%), Positives = 115/199 (57%), Gaps = 3/199 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +E E   R +    V G+DE GRG LAG V  AA+IL P     G+NDSKK+S K+RE L
Sbjct: 4   YEFEQAARREGYAAVCGVDEAGRGPLAGDVYAAAVILPPGLELAGVNDSKKLSEKRREAL 63

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y  IT  A    ++SAS + I++ NI +A+L A+  AVE L V    AL+DG   P    
Sbjct: 64  YGVITEQAAAWCVASASVEEIERLNILQASLLAMRRAVEGLGVRADFALVDGNRDPHFEG 123

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                ++ GD  S S+AAASI+AKVTRDR M     +YP YGF+ H GY T  H++ + +
Sbjct: 124 VPCKTIVGGDGKSASVAAASILAKVTRDRYMEQLAARYPQYGFERHKGYGTQAHREALLK 183

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            GP   HR  F  LR L +
Sbjct: 184 YGPCPAHRKLF--LRRLGL 200


>gi|154686022|ref|YP_001421183.1| ribonuclease HII [Bacillus amyloliquefaciens FZB42]
 gi|166225167|sp|A7Z4M6|RNH2_BACA2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|154351873|gb|ABS73952.1| RnhB [Bacillus amyloliquefaciens FZB42]
          Length = 255

 Score =  264 bits (675), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 85/195 (43%), Positives = 117/195 (60%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E +  +K    +AG+DE GRG LAGPVV  A+IL       G+ DSKK+S KK EE Y
Sbjct: 61  AYERLSSKKGFRLIAGVDEAGRGPLAGPVVAGAVILPAECEILGLTDSKKLSEKKLEEYY 120

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +IT  A  + +       ID+ NI++A   A+  AV  L   P   L+D  ++P D+P 
Sbjct: 121 SRITEEAAAVGVGIVHADVIDRINIYEAARLAMVKAVNALTETPDYLLVDAMTLPLDIP- 179

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              +VIKGD+ S+SIAA + IAKVTRDRLM    K YP YGF+ + GY T +H + ++  
Sbjct: 180 -QSSVIKGDAKSVSIAAGACIAKVTRDRLMAEYAKTYPMYGFEKNKGYGTKEHLEALQAY 238

Query: 192 GPSCIHRLTFRPLRN 206
           GP+ IHR TF P+++
Sbjct: 239 GPTTIHRKTFAPVQS 253


>gi|251782421|ref|YP_002996723.1| ribonuclease HII [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242391050|dbj|BAH81509.1| ribonuclease HII [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 256

 Score =  264 bits (675), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 82/200 (41%), Positives = 120/200 (60%), Gaps = 6/200 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +K    +AGIDEVGRG LAGPVV A +IL       G+NDSKKI   K E +
Sbjct: 59  LSYEKALYKKGYQAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKAKHETI 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127
           Y+ +   A+ I I    +Q ID+ NI++AT  A+  A++ L+     P   LID  ++  
Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTL-- 176

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           D+     ++IKGD+ SLSIAAASI+AKVTRD++M    + +P YGF  + GY T +H   
Sbjct: 177 DIAIPQQSIIKGDANSLSIAAASIVAKVTRDQMMANYERIFPGYGFAKNSGYGTKEHLDG 236

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           ++  G + IHR +F P++++
Sbjct: 237 LRTHGITPIHRKSFEPIKSM 256


>gi|139473750|ref|YP_001128466.1| ribonuclease HII [Streptococcus pyogenes str. Manfredo]
 gi|209559442|ref|YP_002285914.1| ribonuclease HII [Streptococcus pyogenes NZ131]
 gi|166226662|sp|A2REG0|RNH2_STRPG RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238056782|sp|B5XLK7|RNH2_STRPZ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|134271997|emb|CAM30235.1| ribonuclease HII [Streptococcus pyogenes str. Manfredo]
 gi|209540643|gb|ACI61219.1| Ribonuclease HII [Streptococcus pyogenes NZ131]
          Length = 263

 Score =  264 bits (675), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 82/200 (41%), Positives = 122/200 (61%), Gaps = 6/200 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++    +AGIDEVGRG LAGPVV A +IL  +    G+NDSKKI   K E +
Sbjct: 59  LSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKSKHETI 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127
           Y+ +   A+ I I    +Q ID+ NI++AT  A+  A++ L+     P   LID  ++  
Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTL-- 176

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           D+     +++KGD+ SLSIAAASI+AKVTRD++M    + +P YGF  + GY T +H Q 
Sbjct: 177 DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQG 236

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           +K  G + IHR +F P++++
Sbjct: 237 LKAYGITPIHRKSFEPVKSM 256


>gi|227524479|ref|ZP_03954528.1| ribonuclease HII [Lactobacillus hilgardii ATCC 8290]
 gi|227088349|gb|EEI23661.1| ribonuclease HII [Lactobacillus hilgardii ATCC 8290]
          Length = 255

 Score =  264 bits (675), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 81/200 (40%), Positives = 118/200 (59%), Gaps = 3/200 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F+ E     + +  VAG+DEVGRG LAGPVV  A IL  +     +NDSK+++ + R
Sbjct: 57  QSRFKYERSFWHRGVNYVAGVDEVGRGPLAGPVVACATILPRDFDLIQVNDSKQLTPEIR 116

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
             L  +I   AI I +    ++ ID+ NI++AT  A+  AV NL   P   ++D   IP 
Sbjct: 117 ARLAPQIKREAISIGLGLVDNKGIDRLNIYEATRVAMKQAVNNLTQQPDEIIVDAMQIP- 175

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +P     +IKGD+ S+S++AASI+AKV RD LM    ++YP+Y F  + GY T KH   
Sbjct: 176 -VPIHQTRLIKGDAKSISVSAASIVAKVYRDNLMDQYAQQYPEYDFRHNAGYGTTKHLSA 234

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           +K+ G + IHR TF P++N 
Sbjct: 235 LKKYGATPIHRKTFAPIKNF 254


>gi|116492734|ref|YP_804469.1| ribonuclease HII [Pediococcus pentosaceus ATCC 25745]
 gi|122265802|sp|Q03FJ5|RNH2_PEDPA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|116102884|gb|ABJ68027.1| Ribonuclease HII [Pediococcus pentosaceus ATCC 25745]
          Length = 255

 Score =  264 bits (675), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 95/197 (48%), Positives = 124/197 (62%), Gaps = 3/197 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F LE  +    +  VAGIDEVGRG LAGPVV A+++LD       +NDSK++S + R
Sbjct: 55  QARFTLERELWSNGIDLVAGIDEVGRGCLAGPVVTASVVLDETFDLIDVNDSKQLSSELR 114

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           EELY KI + A+ + I   S+Q ID+ NI  AT  A+  AV NL V P+  LID  + P 
Sbjct: 115 EELYAKILTEAVSVGIGVCSNQKIDEVNILNATKLAMREAVGNLNVTPQHLLIDAVNAPI 174

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           ++P     + KGDS S+SIAAASI+AKV RD LMR     YP YGFD +VGY T +H + 
Sbjct: 175 EIPKTV--MFKGDSKSISIAAASIVAKVYRDHLMRSYAALYPGYGFDKNVGYGTKQHIEG 232

Query: 188 IKEKGPSCIHRLTFRPL 204
           +K  G + IHR TF P+
Sbjct: 233 LKTYGVTPIHRQTFEPV 249


>gi|169633130|ref|YP_001706866.1| ribonuclease HII [Acinetobacter baumannii SDF]
 gi|169796619|ref|YP_001714412.1| ribonuclease HII [Acinetobacter baumannii AYE]
 gi|213156183|ref|YP_002318603.1| ribonuclease H [Acinetobacter baumannii AB0057]
 gi|215484081|ref|YP_002326306.1| Ribonuclease HII family protein [Acinetobacter baumannii
           AB307-0294]
 gi|301347289|ref|ZP_07228030.1| ribonuclease HII [Acinetobacter baumannii AB056]
 gi|301510211|ref|ZP_07235448.1| ribonuclease HII [Acinetobacter baumannii AB058]
 gi|301597198|ref|ZP_07242206.1| ribonuclease HII [Acinetobacter baumannii AB059]
 gi|332853559|ref|ZP_08434823.1| ribonuclease HII [Acinetobacter baumannii 6013150]
 gi|332868424|ref|ZP_08438155.1| ribonuclease HII [Acinetobacter baumannii 6013113]
 gi|169149546|emb|CAM87435.1| RNAse HII [Acinetobacter baumannii AYE]
 gi|169151922|emb|CAP00776.1| RNAse HII [Acinetobacter baumannii]
 gi|213055343|gb|ACJ40245.1| ribonuclease H [Acinetobacter baumannii AB0057]
 gi|213987268|gb|ACJ57567.1| Ribonuclease HII family protein [Acinetobacter baumannii
           AB307-0294]
 gi|332728592|gb|EGJ59964.1| ribonuclease HII [Acinetobacter baumannii 6013150]
 gi|332733423|gb|EGJ64606.1| ribonuclease HII [Acinetobacter baumannii 6013113]
          Length = 188

 Score =  264 bits (675), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 83/184 (45%), Positives = 117/184 (63%), Gaps = 1/184 (0%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DE GRG L G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I   A+  S
Sbjct: 1   MFVAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWS 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+ A+H  ID+ NI +AT  A+  AV+ L+  P+  ++DG  IP+ +     A++ GD+ 
Sbjct: 61  IAEATHAEIDELNILQATFLAMQRAVDGLKTQPQKVIVDGNQIPKGIVIPCEAIVGGDAS 120

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRDR M    ++YP +GF  H GYPT  H + I   G    HR ++ 
Sbjct: 121 HAEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYA 180

Query: 203 PLRN 206
           P++ 
Sbjct: 181 PVKR 184


>gi|291546334|emb|CBL19442.1| Ribonuclease HII [Ruminococcus sp. SR1/5]
          Length = 251

 Score =  264 bits (675), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 90/182 (49%), Positives = 121/182 (66%), Gaps = 2/182 (1%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +++  + GIDEVGRG LAGPVV  A+IL  +     +NDSKK++ KKREELY+ I   A+
Sbjct: 66  EHLGYLCGIDEVGRGPLAGPVVACAVILPKDCDILWLNDSKKLTAKKREELYDVILEGAV 125

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
            + I  AS + ID+ NI +AT +A+  AV  L V P+  L D  +IPE +      +IKG
Sbjct: 126 SVGIGMASPERIDEINILQATYEAMRQAVSRLSVQPQLLLNDAVTIPE-IQIPQVPIIKG 184

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D+ S+SIAAASI+AKVTRDR+M    K  P+YGF S+ GY +A H + +K+ GPS IHR 
Sbjct: 185 DAKSVSIAAASIVAKVTRDRMMEEYDKVLPEYGFASNKGYGSAAHIEALKKYGPSPIHRK 244

Query: 200 TF 201
           TF
Sbjct: 245 TF 246


>gi|167624881|ref|YP_001675175.1| ribonuclease HII [Shewanella halifaxensis HAW-EB4]
 gi|189043659|sp|B0TP69|RNH2_SHEHH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|167354903|gb|ABZ77516.1| Ribonuclease H [Shewanella halifaxensis HAW-EB4]
          Length = 203

 Score =  264 bits (675), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 92/185 (49%), Positives = 121/185 (65%), Gaps = 2/185 (1%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81
           +   AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KKRE L+E+I   A+ +
Sbjct: 17  IGHYAGVDEVGRGPLIGNVVTAAVILDPNNPIEGLNDSKKLSEKKRELLFEQIQQKALSV 76

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           S+ SA+   ID+ NI  AT+ A+  AV  L + P S L+DG   P D   ++ A+IKGD 
Sbjct: 77  SVGSATPAEIDELNILHATMLAMQRAVAGLNIKPTSVLVDGNRTP-DFGVESHAIIKGDG 135

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +  +I+AASIIAKV RDR M     +YP+YGFD H GYPT  H + + + G    HR +F
Sbjct: 136 LIDAISAASIIAKVVRDREMDALALQYPEYGFDKHKGYPTKAHFEALTQHGVLPEHRKSF 195

Query: 202 RPLRN 206
           RP+R 
Sbjct: 196 RPVRE 200


>gi|319897459|ref|YP_004135656.1| ribonuclease hii, degrades RNA of DNA-RNA hybrids [Haemophilus
           influenzae F3031]
 gi|317432965|emb|CBY81332.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Haemophilus
           influenzae F3031]
          Length = 197

 Score =  264 bits (675), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 85/187 (45%), Positives = 118/187 (63%), Gaps = 1/187 (0%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +    +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L E+I   A+
Sbjct: 6   QGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKAL 65

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             ++  A    ID+ NI +A+L A+  AV++L++ P   L+DG  IP+ L   A A++KG
Sbjct: 66  AWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKYLDIPAQAIVKG 125

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DSI   I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR 
Sbjct: 126 DSIVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRR 185

Query: 200 TFRPLRN 206
           +F P++ 
Sbjct: 186 SFAPVKK 192


>gi|15642244|ref|NP_231877.1| ribonuclease HII [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|147673627|ref|YP_001217761.1| ribonuclease HII [Vibrio cholerae O395]
 gi|153817064|ref|ZP_01969731.1| ribonuclease HII [Vibrio cholerae NCTC 8457]
 gi|153820817|ref|ZP_01973484.1| ribonuclease HII [Vibrio cholerae B33]
 gi|227082370|ref|YP_002810921.1| ribonuclease HII [Vibrio cholerae M66-2]
 gi|229507680|ref|ZP_04397185.1| ribonuclease HII [Vibrio cholerae BX 330286]
 gi|229512125|ref|ZP_04401604.1| ribonuclease HII [Vibrio cholerae B33]
 gi|229519260|ref|ZP_04408703.1| ribonuclease HII [Vibrio cholerae RC9]
 gi|229607184|ref|YP_002877832.1| ribonuclease HII [Vibrio cholerae MJ-1236]
 gi|254849376|ref|ZP_05238726.1| ribonuclease HII [Vibrio cholerae MO10]
 gi|255747057|ref|ZP_05421002.1| ribonuclease HII [Vibrio cholera CIRS 101]
 gi|262161398|ref|ZP_06030508.1| ribonuclease HII [Vibrio cholerae INDRE 91/1]
 gi|298500379|ref|ZP_07010184.1| ribonuclease HII [Vibrio cholerae MAK 757]
 gi|12644303|sp|P52021|RNH2_VIBCH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|172047613|sp|A5F626|RNH2_VIBC3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254808006|sp|C3LQ18|RNH2_VIBCM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|9656806|gb|AAF95390.1| ribonuclease HII [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|126512332|gb|EAZ74926.1| ribonuclease HII [Vibrio cholerae NCTC 8457]
 gi|126521609|gb|EAZ78832.1| ribonuclease HII [Vibrio cholerae B33]
 gi|146315510|gb|ABQ20049.1| ribonuclease HII [Vibrio cholerae O395]
 gi|227010258|gb|ACP06470.1| ribonuclease HII [Vibrio cholerae M66-2]
 gi|227014142|gb|ACP10352.1| ribonuclease HII [Vibrio cholerae O395]
 gi|229343949|gb|EEO08924.1| ribonuclease HII [Vibrio cholerae RC9]
 gi|229352090|gb|EEO17031.1| ribonuclease HII [Vibrio cholerae B33]
 gi|229355185|gb|EEO20106.1| ribonuclease HII [Vibrio cholerae BX 330286]
 gi|229369839|gb|ACQ60262.1| ribonuclease HII [Vibrio cholerae MJ-1236]
 gi|254845081|gb|EET23495.1| ribonuclease HII [Vibrio cholerae MO10]
 gi|255735459|gb|EET90859.1| ribonuclease HII [Vibrio cholera CIRS 101]
 gi|262028709|gb|EEY47363.1| ribonuclease HII [Vibrio cholerae INDRE 91/1]
 gi|297541072|gb|EFH77126.1| ribonuclease HII [Vibrio cholerae MAK 757]
          Length = 206

 Score =  264 bits (675), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 92/202 (45%), Positives = 123/202 (60%), Gaps = 2/202 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           + ++P  EL           +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S 
Sbjct: 1   MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSE 60

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KKR  L+ +I   A+  ++   S Q ID+ NI +AT+ A+  AV  L++ P   LIDG  
Sbjct: 61  KKRLALFPEIQVKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK 120

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           IP+ LP +A AV+KGD     I+AASIIAKV RD+ M    K+YP +GF  H GYPTA H
Sbjct: 121 IPK-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179

Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206
              I++ G    HR +F P++ 
Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201


>gi|258627364|ref|ZP_05722148.1| ribonuclease HII [Vibrio mimicus VM603]
 gi|258580402|gb|EEW05367.1| ribonuclease HII [Vibrio mimicus VM603]
          Length = 206

 Score =  264 bits (675), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 119/202 (58%), Gaps = 2/202 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           + ++P  EL           +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S 
Sbjct: 1   MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRAIVGLNDSKKLSE 60

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KKR  L+ +I   A+  S+   S + ID+ NI +AT+ A+  AV  L V P   L+DG  
Sbjct: 61  KKRLALFPEIQEKALAWSVGRCSPREIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNK 120

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +P  LP  A AV+KGD     I+AASIIAKV RD  M    K+YP +GF  H GYPTA H
Sbjct: 121 VPT-LPMDAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAAH 179

Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206
              I++ G    HR +F P++ 
Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201


>gi|312871434|ref|ZP_07731529.1| ribonuclease HII [Lactobacillus iners LEAF 3008A-a]
 gi|312872310|ref|ZP_07732380.1| ribonuclease HII [Lactobacillus iners LEAF 2062A-h1]
 gi|311092133|gb|EFQ50507.1| ribonuclease HII [Lactobacillus iners LEAF 2062A-h1]
 gi|311093087|gb|EFQ51436.1| ribonuclease HII [Lactobacillus iners LEAF 3008A-a]
          Length = 250

 Score =  263 bits (674), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 97/206 (47%), Positives = 129/206 (62%), Gaps = 8/206 (3%)

Query: 7   PERPHFELEAMV-REKNMW----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61
            E+   E E     EK  W     VAG+DEVGRG LAGPVV AA+ILD N     +NDSK
Sbjct: 45  KEKAFLEFETRFSYEKEFWCQKKLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSK 104

Query: 62  KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K++ KKR EL+  I   A+ +S+  A++  IDK NI++A   A+  AV+ L+V P + L+
Sbjct: 105 KLTPKKRNELFPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLV 164

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           D   +P DLP     +I+GDS S SIAAASI+AKV RDRLM    + YP+Y F  + GY 
Sbjct: 165 DAMDVPVDLP--QLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYG 222

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206
           TAKH   +K+ GP+ IHR +F P+ +
Sbjct: 223 TAKHLSALKQYGPTPIHRFSFEPVSS 248


>gi|121604674|ref|YP_982003.1| ribonuclease HII [Polaromonas naphthalenivorans CJ2]
 gi|189043638|sp|A1VN54|RNH2_POLNA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|120593643|gb|ABM37082.1| RNase HII [Polaromonas naphthalenivorans CJ2]
          Length = 208

 Score =  263 bits (674), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 84/182 (46%), Positives = 120/182 (65%), Gaps = 2/182 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82
             +AG+DE GRG LAGPVV AA+ILDP N   G+ DSKK++  +RE+LY++I + A+  S
Sbjct: 23  GLMAGVDEAGRGPLAGPVVAAAVILDPFNPIMGLADSKKLTALRREKLYDEIQAKALCCS 82

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+ A+ + ID  NI +AT+ A+  AVE L++ P   L+DG  +P  L   A A++KGD++
Sbjct: 83  IALATVEEIDSLNILQATMLAMKRAVEGLRLKPNKVLVDGNRLPT-LKILAEAIVKGDAL 141

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +I+AASI+AKV RDR     H +YP YGF  H GY TA+H   +++ G    HR +F 
Sbjct: 142 VPAISAASILAKVYRDRWCGDYHLQYPQYGFAGHKGYGTAEHLAALRQHGACPQHRKSFA 201

Query: 203 PL 204
           P+
Sbjct: 202 PV 203


>gi|16272990|ref|NP_439217.1| ribonuclease HII [Haemophilus influenzae Rd KW20]
 gi|260580145|ref|ZP_05847975.1| ribonuclease HII [Haemophilus influenzae RdAW]
 gi|1173096|sp|P43808|RNH2_HAEIN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|1574610|gb|AAC22714.1| ribonuclease HII (rnhB) [Haemophilus influenzae Rd KW20]
 gi|260093429|gb|EEW77362.1| ribonuclease HII [Haemophilus influenzae RdAW]
          Length = 197

 Score =  263 bits (674), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 87/187 (46%), Positives = 118/187 (63%), Gaps = 1/187 (0%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA- 79
           +    +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L E+I   A 
Sbjct: 6   QGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKAR 65

Query: 80  IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             ++  A    ID+ NI +A+L A+  AV++L++ P   LIDG  IP+DL   A AV+KG
Sbjct: 66  AWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLIDGNKIPKDLAIPAQAVVKG 125

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DS+   I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G    HR 
Sbjct: 126 DSLVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRR 185

Query: 200 TFRPLRN 206
           +F P++ 
Sbjct: 186 SFAPVKK 192


>gi|325121486|gb|ADY81009.1| RNAse HII [Acinetobacter calcoaceticus PHEA-2]
          Length = 188

 Score =  263 bits (674), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 82/184 (44%), Positives = 117/184 (63%), Gaps = 1/184 (0%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             +AG+DE GRG L G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I   A+  S
Sbjct: 1   MFIAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWS 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+ A+H  ID+ NI +AT  A+  AV+ L+  P+  ++DG  IP+ +     A++ GD+ 
Sbjct: 61  IAEATHAEIDELNILQATFLAMQRAVDGLKTQPQKVIVDGNQIPKGIIIPCEAIVGGDAS 120

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRDR M    ++YP +GF  H GYPT  H + I   G    HR ++ 
Sbjct: 121 HAEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAVHGVIDQHRRSYA 180

Query: 203 PLRN 206
           P++ 
Sbjct: 181 PVKR 184


>gi|296330821|ref|ZP_06873296.1| ribonuclease HII [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674339|ref|YP_003866011.1| ribonuclease HII [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151826|gb|EFG92700.1| ribonuclease HII [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305412583|gb|ADM37702.1| ribonuclease HII [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 255

 Score =  263 bits (674), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 81/196 (41%), Positives = 119/196 (60%), Gaps = 3/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E + R K    +AG+DEVGRG LAGPVV +A+IL       G+ DSKK+S KKR+E Y
Sbjct: 61  SYERLARNKGFRLIAGVDEVGRGPLAGPVVASAVILPEECEILGLTDSKKLSEKKRDEYY 120

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E I   A+ + I       ID+ NI++A+  A+  A+ +L   P   L+D  ++P  +  
Sbjct: 121 ELIMKEALAVGIGIVEASVIDEVNIYEASKMAMVKAIHDLSDTPDYLLVDAMTLPVGID- 179

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAA + IAKVTRDR+M    + YP YGF+ + GY T +H + +   
Sbjct: 180 -QSSIIKGDAKSVSIAAGACIAKVTRDRMMSAYAETYPIYGFEKNKGYGTKEHLEALAAH 238

Query: 192 GPSCIHRLTFRPLRNL 207
           GP+ +HR TF P+++ 
Sbjct: 239 GPTELHRKTFAPVQSF 254


>gi|312869151|ref|ZP_07729325.1| ribonuclease HII [Lactobacillus oris PB013-T2-3]
 gi|311095397|gb|EFQ53667.1| ribonuclease HII [Lactobacillus oris PB013-T2-3]
          Length = 255

 Score =  263 bits (674), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 83/197 (42%), Positives = 118/197 (59%), Gaps = 3/197 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F  E  + +     VAG+DEVGRG LAGPVV  A+ILDP+    G+ DSK+++  +R
Sbjct: 57  QQRFNYERQLWQSGCRYVAGMDEVGRGPLAGPVVTCAVILDPDFDLIGVTDSKQLTRHER 116

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E+LY +I   A+ +SI+    + ID+ NI+ AT DA+  AV NL   P   ++D   +P 
Sbjct: 117 EQLYLRIVDEAVEVSIAVNDRKTIDRLNIYAATQDAMMRAVRNLNHRPDHLIVDAVPLPF 176

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           D P     +IKGD  S+S+AAASI+AK  RD LM+   + YP YGF  ++GY T +H   
Sbjct: 177 DYP--QTTLIKGDQKSISVAAASIVAKEYRDHLMKDYDRVYPGYGFAENMGYGTKEHLAG 234

Query: 188 IKEKGPSCIHRLTFRPL 204
           +   G   IHR +F P+
Sbjct: 235 LARLGACPIHRRSFNPV 251


>gi|289578443|ref|YP_003477070.1| ribonuclease H [Thermoanaerobacter italicus Ab9]
 gi|289528156|gb|ADD02508.1| Ribonuclease H [Thermoanaerobacter italicus Ab9]
          Length = 242

 Score =  263 bits (674), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 86/189 (45%), Positives = 115/189 (60%), Gaps = 2/189 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  + + N+  +AG+DE GRG L GPVV A +IL  N     INDSKK+S +KRE L E
Sbjct: 48  YENQLYQLNLNFIAGVDEAGRGPLVGPVVAACVILPKNVFIPEINDSKKLSEEKREVLSE 107

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   AI  +I     + IDK NI  AT  A+  A+  +Q      L+D  +IP+ +   
Sbjct: 108 VIKKVAISYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQ-IEIN 166

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             A+IKGDS S+SIAAASI+AKV RD++M+  HK YP Y F+ + GY T +H + +K+ G
Sbjct: 167 QKAIIKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYG 226

Query: 193 PSCIHRLTF 201
           P  IHR TF
Sbjct: 227 PCPIHRKTF 235


>gi|322391939|ref|ZP_08065403.1| ribonuclease HII [Streptococcus peroris ATCC 700780]
 gi|321145165|gb|EFX40562.1| ribonuclease HII [Streptococcus peroris ATCC 700780]
          Length = 262

 Score =  263 bits (674), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 85/197 (43%), Positives = 123/197 (62%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  +  + +  +AG+DEVGRG LAGPVV AA+IL       G+NDSK+I  KK  E+
Sbjct: 58  LSYEKELYAQGLNLIAGVDEVGRGPLAGPVVAAAVILPKKCKIKGLNDSKQIPKKKHREV 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ +  +A+ I I    +  ID+ NI++AT  A+  A+  L+  P   LID   +  DLP
Sbjct: 118 FQAVKDNALAIGIGIMDNHIIDQVNIYEATKLAMKEAISQLESQPEHLLIDAMKL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD LM    +++P Y F+ + GY TAKH + IK+
Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDDLMVTYGQQFPGYDFEHNAGYGTAKHLEGIKQ 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR +F P+++ 
Sbjct: 236 YGITSIHRRSFEPIKSF 252


>gi|262282236|ref|ZP_06060004.1| ribonuclease HII [Streptococcus sp. 2_1_36FAA]
 gi|262261527|gb|EEY80225.1| ribonuclease HII [Streptococcus sp. 2_1_36FAA]
          Length = 254

 Score =  263 bits (674), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 87/197 (44%), Positives = 121/197 (61%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +     +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  KK  E+
Sbjct: 58  LRYEKELYQAGYQAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHNEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ + + A+ + I    +  ID+ NI++AT  A+  A+  L + P   LID   +  D+P
Sbjct: 118 YQAVMNKALTVGIGLMDNDIIDQVNIYEATKLAMKEALSKLFLKPDYLLIDAMKLDVDIP 177

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRDRLM    K++P Y F  + GY T  H + ++ 
Sbjct: 178 --QDSIIKGDANSLSIAAASIVAKVTRDRLMADYDKEFPGYAFAQNAGYGTKSHLEGLEH 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G S IHR TF P++++
Sbjct: 236 YGVSPIHRKTFEPVKSM 252


>gi|262372179|ref|ZP_06065458.1| ribonuclease HII [Acinetobacter junii SH205]
 gi|262312204|gb|EEY93289.1| ribonuclease HII [Acinetobacter junii SH205]
          Length = 188

 Score =  263 bits (674), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 86/184 (46%), Positives = 117/184 (63%), Gaps = 1/184 (0%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DE GRG L G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I   A+  S
Sbjct: 1   MFVAGVDEAGRGPLVGSVVAAAVILDPNNPIEGLNDSKKLTEKKREKLFIEIKEKALAWS 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+ A+H  ID+ NI +AT  A+  AVENL+  P   ++DG  IP+ +     A++ GD+ 
Sbjct: 61  IAEATHTEIDEMNILQATFLAMRRAVENLKTTPHKVIVDGNQIPKGIEIACEAIVGGDAT 120

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRD  M+   + YPDYGF  H GYPT  H + I   G    HR ++ 
Sbjct: 121 HAEISAASILAKVTRDHQMKTLDELYPDYGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYA 180

Query: 203 PLRN 206
           P++ 
Sbjct: 181 PVKK 184


>gi|300715410|ref|YP_003740213.1| ribonuclease HII [Erwinia billingiae Eb661]
 gi|299061246|emb|CAX58355.1| Ribonuclease HII [Erwinia billingiae Eb661]
          Length = 207

 Score =  263 bits (674), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 87/183 (47%), Positives = 113/183 (61%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++I   A+  S+
Sbjct: 11  CIAGVDEVGRGPLVGAVVTAAVILDPARPIVGLADSKKLSEKRRLALYDEIVEKALSWSL 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID+ NI  AT+ A+  AV  L + P   LIDG   P  L   + AV+KGDS+ 
Sbjct: 71  GRAEPEEIDRLNILHATMLAMQRAVAGLHICPDFVLIDGNRCPA-LAMPSLAVVKGDSLV 129

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASIIAKVTRDR M      +P YGF  H GYPTA H + + + G +  HR +F P
Sbjct: 130 REISAASIIAKVTRDREMSELDVLFPQYGFAQHKGYPTALHMEKLAQHGVTPHHRRSFAP 189

Query: 204 LRN 206
           +RN
Sbjct: 190 VRN 192


>gi|94500636|ref|ZP_01307166.1| ribonuclease HII [Oceanobacter sp. RED65]
 gi|94427191|gb|EAT12171.1| ribonuclease HII [Oceanobacter sp. RED65]
          Length = 222

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 89/207 (42%), Positives = 128/207 (61%), Gaps = 8/207 (3%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           ++  F+LE  +++  +    G+DE G G L G VV AA+ILDPNN    +NDSKK+S KK
Sbjct: 9   QQAWFQLEQSLKQSGILY-CGVDEAGAGPLCGDVVAAAVILDPNNPIDSLNDSKKLSEKK 67

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALI 120
           RE L+ +I   A+   I+  + Q ID+ NI +A + A+  AV+ L+       +P  A I
Sbjct: 68  REALFPEIKEKALAYCIARCTPQEIDEINILQARMLAMTRAVKGLRDQNGEICLPEHAFI 127

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG  +P+ LPCQA  V+KGD++  +I+AAS++AKV RD  M    K YP Y    H GYP
Sbjct: 128 DGNRLPQGLPCQATPVVKGDALVAAISAASVLAKVQRDHDMVELDKHYPGYELAKHKGYP 187

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           T  H Q++KE GP+ I+R +F P++ L
Sbjct: 188 TKAHLQLLKENGPTDIYRKSFGPVKAL 214


>gi|259500645|ref|ZP_05743547.1| ribonuclease HII [Lactobacillus iners DSM 13335]
 gi|302191334|ref|ZP_07267588.1| ribonuclease HII [Lactobacillus iners AB-1]
 gi|259168029|gb|EEW52524.1| ribonuclease HII [Lactobacillus iners DSM 13335]
          Length = 250

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 97/206 (47%), Positives = 129/206 (62%), Gaps = 8/206 (3%)

Query: 7   PERPHFELEAMV-REKNMW----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61
            E+   E E     EK  W     VAG+DEVGRG LAGPVV AA+ILD N     +NDSK
Sbjct: 45  KEKAFLEFETRFSYEKEFWCQKKLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSK 104

Query: 62  KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K++ KKR EL+  I   A+ +S+  A++  IDK NI++A   A+  AV+ L+V P + L+
Sbjct: 105 KLTPKKRNELFPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLV 164

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           D   +P DLP     +I+GDS S SIAAASI+AKV RDRLM    + YP+Y F  + GY 
Sbjct: 165 DAMDVPIDLP--QLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYG 222

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206
           TAKH   +K+ GP+ IHR +F P+ +
Sbjct: 223 TAKHLSALKQYGPTPIHRFSFEPVSS 248


>gi|238916977|ref|YP_002930494.1| ribonuclease HII [Eubacterium eligens ATCC 27750]
 gi|238872337|gb|ACR72047.1| ribonuclease HII [Eubacterium eligens ATCC 27750]
          Length = 218

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 92/196 (46%), Positives = 117/196 (59%), Gaps = 6/196 (3%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E M        + GIDE GRG LAGPVV  A+IL        +NDSKK+S KKR+EL+
Sbjct: 27  EYEEMY--DTFSYICGIDEAGRGPLAGPVVAGAVILPKGKRILYVNDSKKLSEKKRDELF 84

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           + I   A+   I   S + ID+ NI +AT +A++ AV  L V P   L D  +IP  +  
Sbjct: 85  DVIKEEALSYGIGIVSPERIDEINILQATYEAMHEAVNKLSVKPDILLNDAVTIP-GIDI 143

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   +IKGD+ SLSIA+ASI+AKVTRDRLM      YP+YGF  H GY T  H + IKE 
Sbjct: 144 KQIPIIKGDAKSLSIASASILAKVTRDRLMTEYDSLYPEYGFARHKGYGTKVHIEAIKEY 203

Query: 192 GPSCIHRLTFRPLRNL 207
           GP  IHR TF  ++N 
Sbjct: 204 GPCPIHRRTF--IKNF 217


>gi|254508672|ref|ZP_05120787.1| ribonuclease HII [Vibrio parahaemolyticus 16]
 gi|219548429|gb|EED25439.1| ribonuclease HII [Vibrio parahaemolyticus 16]
          Length = 205

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 92/200 (46%), Positives = 119/200 (59%), Gaps = 7/200 (3%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E P FE       +    VAG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KK
Sbjct: 7   ELPPFEYP-----QGYQHVAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKK 61

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L  +I   A+  S+   +   ID+ NI +AT+ A+  A+  L+V P  ALIDG   P
Sbjct: 62  RLALLPEIQEKALAWSVGRCTPAEIDELNILQATMVAMQRAIAGLKVQPDLALIDGNRCP 121

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP  A AV+KGD     I+AASIIAKV RD+ M    K +P++GF  H GYPT  H +
Sbjct: 122 A-LPMDAQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKLHPEFGFAKHKGYPTKAHFE 180

Query: 187 VIKEKGPSCIHRLTFRPLRN 206
            I+  G    HR +F+P++ 
Sbjct: 181 AIEAHGVIDQHRKSFKPVKK 200


>gi|212212281|ref|YP_002303217.1| ribonuclease HII [Coxiella burnetii CbuG_Q212]
 gi|238056775|sp|B6IZE4|RNH2_COXB2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|212010691|gb|ACJ18072.1| ribonuclease HII [Coxiella burnetii CbuG_Q212]
          Length = 202

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 90/186 (48%), Positives = 120/186 (64%), Gaps = 2/186 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DE GRG LAGPV+ AA+IL+P  I  G+ DSKK+S KKREELYEKI ++    +I
Sbjct: 13  LIAGVDEAGRGPLAGPVITAAVILNPEIIIEGLADSKKLSLKKREELYEKIITNCKAFAI 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI +ATL A+  A+  L + P   LIDG   P DLP +  A+++GD   
Sbjct: 73  ARADVEEIDRLNIFRATLLAMQRAINQLSIQPDKVLIDGHCCP-DLPYETQAIVQGDQNV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AKVTRDR M     +YPDYGF  H GY T  H   I   G + +HR +F P
Sbjct: 132 PAISAASILAKVTRDREMLKYDAQYPDYGFAIHKGYGTKAHLAAIHRFGITPVHRKSFEP 191

Query: 204 LRNLSV 209
           +R L +
Sbjct: 192 VRQLKL 197


>gi|300812547|ref|ZP_07092964.1| ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496420|gb|EFK31525.1| ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 256

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 90/198 (45%), Positives = 121/198 (61%), Gaps = 4/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E     K    VAG+DEVGRG LAGPVV AA+IL  +     +NDSKK+S +KR  
Sbjct: 55  RFSYEKDFWAKG-QLVAGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLA 113

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY KI   A+ + +    ++ ID+ NI++A   A+  AVE L   P + L+D  ++P DL
Sbjct: 114 LYPKILQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSTRPDALLVDAMNVPVDL 173

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +IKGD+ S SIAAASI+AKV RD LM    + YPDY FD + GY T  H + ++
Sbjct: 174 P--QLELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALR 231

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + GP+ IHRLTF P+  +
Sbjct: 232 KYGPTPIHRLTFSPVSEM 249


>gi|218509940|ref|ZP_03507818.1| ribonuclease HII [Rhizobium etli Brasil 5]
          Length = 221

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 100/183 (54%), Positives = 134/183 (73%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
            PVAG DE GRG LAGPVV AA+ILDP  IP G+NDSK++S ++REEL+ +I ++A +SI
Sbjct: 26  GPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDSKQLSAQRREELFVQILATATVSI 85

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +S+S   ID+ +I KA+LDA+  A+ +L V     L DG  +P  L C   AV+KGD+ S
Sbjct: 86  ASSSSTRIDETDIRKASLDAMRRAICSLAVPASYVLTDGLDVPPGLACPGQAVVKGDARS 145

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           +SIAAASI+AKVTRDR+M  AH  +PDYGF +H GY TA+H+  I++ GP  +HR++FRP
Sbjct: 146 VSIAAASIVAKVTRDRMMARAHNVFPDYGFAAHAGYGTAQHRAGIEKHGPCSLHRMSFRP 205

Query: 204 LRN 206
           LR 
Sbjct: 206 LRK 208


>gi|313123917|ref|YP_004034176.1| ribonuclease hii [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280480|gb|ADQ61199.1| Ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 256

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 90/198 (45%), Positives = 121/198 (61%), Gaps = 4/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E     K    VAG+DEVGRG LAGPVV AA+IL  +     +NDSKK+S +KR  
Sbjct: 55  RFSYEKDFWAKG-QLVAGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLT 113

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY KI   A+ + +    ++ ID+ NI++A   A+  AVE L   P + L+D  ++P DL
Sbjct: 114 LYPKILQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSTRPDALLVDAMNVPVDL 173

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +IKGD+ S SIAAASI+AKV RD LM    + YPDY FD + GY T  H + ++
Sbjct: 174 P--QLELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALR 231

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + GP+ IHRLTF P+  +
Sbjct: 232 KYGPTPIHRLTFSPVSEM 249


>gi|295426276|ref|ZP_06818936.1| ribonuclease HII [Lactobacillus amylolyticus DSM 11664]
 gi|295064015|gb|EFG54963.1| ribonuclease HII [Lactobacillus amylolyticus DSM 11664]
          Length = 251

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 94/198 (47%), Positives = 124/198 (62%), Gaps = 4/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E    +K    VAG+DEVGRG LAGPVV AA+I+D +     +NDSKK+S +KR  
Sbjct: 55  RFTYEKKFWQKG-QIVAGVDEVGRGPLAGPVVTAAVIIDDHFDLLDVNDSKKLSPQKRLA 113

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY KI S AI +++   S Q ID+ NI++A   A+  AV +L   P + L+D  ++P DL
Sbjct: 114 LYPKILSEAISVAVGVKSPQVIDQINIYEADRQAMAEAVLDLDQKPDALLVDAMNVPVDL 173

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +IKGD+ S SIAAASI+AKV RD+LM    K YP Y F  + GY TAKH   +K
Sbjct: 174 P--QVKLIKGDAKSNSIAAASIVAKVFRDKLMDDYAKIYPQYDFPDNAGYGTAKHLAALK 231

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + GP+ IHR TF P+ + 
Sbjct: 232 KYGPTPIHRKTFAPVSDF 249


>gi|227510328|ref|ZP_03940377.1| ribonuclease HII [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227189980|gb|EEI70047.1| ribonuclease HII [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 255

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 81/200 (40%), Positives = 118/200 (59%), Gaps = 3/200 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F+ E     + +  VAG+DEVGRG LAGPVV  A IL  +     +NDSK+++ + R
Sbjct: 57  QSRFKYERSFWHRGVNYVAGVDEVGRGPLAGPVVACATILPRDFDLIQVNDSKQLTPEIR 116

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
             L  +I   AI I +    ++ ID+ NI++AT  A+  AV NL   P   ++D   I  
Sbjct: 117 ARLAPQIKREAISIGLGLVDNKGIDRLNIYEATRVAMKQAVNNLTQQPDEIIVDAMQI-- 174

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +P     +IKGD+ S+S++AASI+AKV RD LM    ++YP+Y F  + GY TAKH   
Sbjct: 175 AVPIHQTRLIKGDAKSISVSAASIVAKVYRDTLMDQYAQQYPEYDFKHNAGYGTAKHLSA 234

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           +K+ G + IHR TF P++N 
Sbjct: 235 LKKYGATPIHRKTFAPVKNF 254


>gi|254286446|ref|ZP_04961403.1| ribonuclease HII [Vibrio cholerae AM-19226]
 gi|150423395|gb|EDN15339.1| ribonuclease HII [Vibrio cholerae AM-19226]
          Length = 206

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 92/202 (45%), Positives = 122/202 (60%), Gaps = 2/202 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           + ++P  EL           +AG+DEVGRG L G VV AA+ILDP+    G+NDSKK+S 
Sbjct: 1   MAKKPSIELHPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPHRPIVGLNDSKKLSE 60

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KKR  L+ +I   A+  S+   S Q ID+ NI +AT+ A+  AV  L++ P   LIDG  
Sbjct: 61  KKRLALFPEIQEKALAWSVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK 120

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           IP+ LP  A AV+KGD     I+AASIIAKV RD+ M    K+YP +GF  H GYPTA H
Sbjct: 121 IPK-LPMAAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179

Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206
              I++ G    HR +F P++ 
Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201


>gi|297544719|ref|YP_003677021.1| Ribonuclease H [Thermoanaerobacter mathranii subsp. mathranii str.
           A3]
 gi|296842494|gb|ADH61010.1| Ribonuclease H [Thermoanaerobacter mathranii subsp. mathranii str.
           A3]
          Length = 242

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 87/189 (46%), Positives = 115/189 (60%), Gaps = 2/189 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  + + N+  +AGIDE GRG L GPVV A +IL  N     INDSKK+S +KRE L E
Sbjct: 48  YENQLYQLNLNFIAGIDEAGRGPLVGPVVAACVILPKNVFIPEINDSKKLSEEKREVLSE 107

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   AI  +I     + IDK NI  AT  A+  A+  +Q      L+D  +IP+ +   
Sbjct: 108 VIKKVAISYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQ-IEIN 166

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             A+IKGDS S+SIAAASI+AKV RD++M+  HK YP Y F+ + GY T +H + +K+ G
Sbjct: 167 QKAIIKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYG 226

Query: 193 PSCIHRLTF 201
           P  IHR TF
Sbjct: 227 PCPIHRKTF 235


>gi|307941608|ref|ZP_07656963.1| ribonuclease HII [Roseibium sp. TrichSKD4]
 gi|307775216|gb|EFO34422.1| ribonuclease HII [Roseibium sp. TrichSKD4]
          Length = 216

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 93/206 (45%), Positives = 125/206 (60%), Gaps = 1/206 (0%)

Query: 1   MFCNSIPERP-HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIND 59
           +F    PE+     LE          +AG+DE GRG  AGPVV AA+ILD + +P G+ D
Sbjct: 7   LFDLVFPEKEADPALERQHASHFGGLLAGVDEAGRGPWAGPVVTAAVILDYDKVPSGLTD 66

Query: 60  SKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           SKK+S  KREEL+ +I   A +S++SA  + ID  NI  ATL+A+  AV  L   PR  +
Sbjct: 67  SKKLSEAKREELFPQICEHAFVSVASAGPKTIDLENIRTATLNAMVRAVSGLAFPPRYVM 126

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           IDGR +P  L     A++KGDS  L++AAASI+AKV RDR+M    +  P+YGF  H GY
Sbjct: 127 IDGRDVPFGLSAPGQALVKGDSRCLAVAAASIVAKVMRDRMMVRLDQIAPEYGFAQHKGY 186

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLR 205
               HQ  + E GPS  HR +F+P++
Sbjct: 187 GVPAHQAALSEHGPSIHHRFSFKPVQ 212


>gi|290473671|ref|YP_003466543.1| RNAse HII [Xenorhabdus bovienii SS-2004]
 gi|289172976|emb|CBJ79747.1| RNAse HII [Xenorhabdus bovienii SS-2004]
          Length = 196

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 90/183 (49%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP     G+ DSKK++ K+RE LY +I   A+  S+
Sbjct: 10  LIAGVDEVGRGPLVGAVVTAAVILDPAKPITGLMDSKKLTEKRREALYLEIKEKALCWSL 69

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID+ NI  AT+ A+  AVE L + P   LIDG   P  LP  A AVIKGDS+ 
Sbjct: 70  GRAEPEEIDQLNILHATMLAMQRAVEGLAITPDYVLIDGNRCPA-LPMSALAVIKGDSLV 128

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M    K++PDYGF  H GYPTA H + +   G +  HR +F P
Sbjct: 129 AEISAASILAKVTRDREMAELGKQFPDYGFAQHKGYPTALHLEKLALLGATEHHRKSFAP 188

Query: 204 LRN 206
           ++ 
Sbjct: 189 VKR 191


>gi|170718385|ref|YP_001783609.1| ribonuclease HII [Haemophilus somnus 2336]
 gi|189043602|sp|B0UW63|RNH2_HAES2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|168826514|gb|ACA31885.1| Ribonuclease H [Haemophilus somnus 2336]
          Length = 211

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 90/187 (48%), Positives = 120/187 (64%), Gaps = 2/187 (1%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
           N+  +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L E+I   A+ 
Sbjct: 9   NVEFIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLKDSKKLSEKKRLLLAEEIKQKALA 68

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            S+  A    IDK NI  AT+ A+  AVENL++ P   L+DG  IP+ LP  A AVIKGD
Sbjct: 69  WSLGRAEPAEIDKLNILHATMLAMQRAVENLKIQPHFVLVDGNRIPQ-LPMSAQAVIKGD 127

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S+   I+AASI+AKV RD+ M    ++YP+Y F  H GYPT  H + + + G    +R +
Sbjct: 128 SLVAEISAASILAKVARDQEMIELDRRYPEYAFAQHKGYPTKLHLERLAQFGVLPEYRRS 187

Query: 201 FRPLRNL 207
           F P++ L
Sbjct: 188 FAPVKKL 194


>gi|183597582|ref|ZP_02959075.1| hypothetical protein PROSTU_00865 [Providencia stuartii ATCC 25827]
 gi|188023079|gb|EDU61119.1| hypothetical protein PROSTU_00865 [Providencia stuartii ATCC 25827]
          Length = 197

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 87/183 (47%), Positives = 114/183 (62%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP N   G+ DSKK++ KKRE+L+ +I   A+   I
Sbjct: 10  LIAGVDEVGRGPLVGAVVTAAVILDPKNPIIGLTDSKKLTEKKREKLFVEIQEKALCWCI 69

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID+ NI  AT+ A+  AV  L + P   L+DG   P  L   + AVIKGDS+ 
Sbjct: 70  GRAEPEEIDEINILHATMLAMQRAVAGLSITPDFVLVDGNRCPT-LSMPSQAVIKGDSLV 128

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKV RDR M    K YP+YGF  H GYPTA H + + + G +  HR +F P
Sbjct: 129 QEISAASILAKVVRDREMVELDKAYPEYGFAKHKGYPTAYHLEKLAQFGATKFHRKSFAP 188

Query: 204 LRN 206
           +R 
Sbjct: 189 VRR 191


>gi|307264856|ref|ZP_07546418.1| Ribonuclease H [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920114|gb|EFN50326.1| Ribonuclease H [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 242

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/189 (44%), Positives = 113/189 (59%), Gaps = 2/189 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  + + N+  +AG+DE GRG L GPVV A +IL        INDSKK+S KKRE L E
Sbjct: 48  YENQLYQLNLNFIAGVDEAGRGPLVGPVVAACVILPKEVFIPEINDSKKLSEKKREVLSE 107

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   A   +I     + IDK NI  AT  A+  A+  +Q      L+D  +IP+ +   
Sbjct: 108 VIKKVATSYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQ-IEIN 166

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             A++KGDS S+SIAAASI+AKV RD++M+  HK YP Y F+ + GY T +H + +K+ G
Sbjct: 167 QKAIVKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYG 226

Query: 193 PSCIHRLTF 201
           P  IHR TF
Sbjct: 227 PCPIHRKTF 235


>gi|260893261|ref|YP_003239358.1| Ribonuclease H [Ammonifex degensii KC4]
 gi|260865402|gb|ACX52508.1| Ribonuclease H [Ammonifex degensii KC4]
          Length = 204

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 88/196 (44%), Positives = 115/196 (58%), Gaps = 2/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E    E+    VAG+DE GRG LAGPVV AA+I  P+     + DSK +S KKR EL 
Sbjct: 3   RWEEKFWEQGFRRVAGVDEAGRGPLAGPVVAAAVIFPPSLDLPLLKDSKLLSPKKRWELA 62

Query: 73  EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I   A   +I   S   ID   I +AT  A+Y A+ +L++ P   LIDG S P  LP 
Sbjct: 63  CRIVELAEDWAIGIGSVAEIDLLGIREATFRAMYRALCSLRLPPDMVLIDGNSSPP-LPW 121

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               ++KGDS   S+AAASI+AKVTRDRLM   H  +P Y F  H GYPT +H++++   
Sbjct: 122 PHLTIVKGDSRVASVAAASILAKVTRDRLMEDLHPLFPQYNFKRHKGYPTKEHKELLARY 181

Query: 192 GPSCIHRLTFRPLRNL 207
           GP  +HR TF P+R+ 
Sbjct: 182 GPVSLHRRTFAPVRHF 197


>gi|54310070|ref|YP_131090.1| ribonuclease HII [Photobacterium profundum SS9]
 gi|73917828|sp|Q6LN38|RNH2_PHOPR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|46914509|emb|CAG21288.1| putative ribonuclease HII [Photobacterium profundum SS9]
          Length = 201

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 88/184 (47%), Positives = 118/184 (64%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L+++I   A+  S+
Sbjct: 15  LIAGVDEVGRGPLVGAVVTAAVILDPNNPIVGLTDSKKLSEKKRNVLFDEIKEKAVAWSL 74

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
                + ID+ NI +AT+ A+  AV +L V P   LIDG  IP+ LP  A AV+KGD   
Sbjct: 75  GRCEPEEIDELNILQATMVAMQRAVADLSVQPDFVLIDGNKIPQ-LPMAAQAVVKGDLRV 133

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASIIAKVTRDR M +   ++P YGF  H GYPT  H + ++  G    HR +F+P
Sbjct: 134 AEISAASIIAKVTRDREMEVLDAQFPQYGFAKHKGYPTKVHVEALELHGAIEQHRKSFKP 193

Query: 204 LRNL 207
           ++ +
Sbjct: 194 VKRI 197


>gi|157962690|ref|YP_001502724.1| ribonuclease HII [Shewanella pealeana ATCC 700345]
 gi|189043660|sp|A8H6K2|RNH2_SHEPA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157847690|gb|ABV88189.1| Ribonuclease H [Shewanella pealeana ATCC 700345]
          Length = 203

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 91/181 (50%), Positives = 119/181 (65%), Gaps = 2/181 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KKRE L+E+I   A+ +S+ S
Sbjct: 21  AGVDEVGRGPLIGNVVTAAVILDPNNPIEGLNDSKKLSEKKRELLFEQIQQKALSVSVGS 80

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A+   ID+ NI  AT+ A+  AV  L + P S L+DG   P D   ++ A+IKGD +  +
Sbjct: 81  ATPAEIDELNILHATMLAMQRAVAGLNIKPSSVLVDGNRTP-DFGVESHAIIKGDGLIDA 139

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASIIAKV RDR M      YP+YGF+ H GYPT  H + + + G    HR +FRP+R
Sbjct: 140 ISAASIIAKVVRDREMDALALLYPEYGFEKHKGYPTKAHFEALAQHGVLPEHRKSFRPVR 199

Query: 206 N 206
            
Sbjct: 200 E 200


>gi|293374717|ref|ZP_06621025.1| ribonuclease HII [Turicibacter sanguinis PC909]
 gi|325840606|ref|ZP_08167087.1| ribonuclease HII [Turicibacter sp. HGF1]
 gi|292646631|gb|EFF64633.1| ribonuclease HII [Turicibacter sanguinis PC909]
 gi|325490255|gb|EGC92588.1| ribonuclease HII [Turicibacter sp. HGF1]
          Length = 257

 Score =  263 bits (672), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 91/194 (46%), Positives = 123/194 (63%), Gaps = 2/194 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +R   +  +AG+DEVGRG LAGPV+ AA+IL  +   FGI+DSKK+S  KR   YE
Sbjct: 62  YENELRYSGIELIAGVDEVGRGPLAGPVIAAAVILPADCWLFGIDDSKKLSESKRLYFYE 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I  +AI I I   + + ID++NI++AT  A+  AV  L   P+  L+D  S+P  L   
Sbjct: 122 QIKKNAISIGIGICTSEEIDQYNIYEATKIAMERAVSKLNPKPQHLLLDAMSLPR-LDIP 180

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGDS S+SIAAASIIAKVTRD  M+     YP YGF+ HVGY T +H   I++ G
Sbjct: 181 QTSIIKGDSKSVSIAAASIIAKVTRDAYMKKLGSAYPQYGFERHVGYGTKEHLLAIEQHG 240

Query: 193 PSCIHRLTFRPLRN 206
               HR +F P+R+
Sbjct: 241 IISEHRKSFEPIRS 254


>gi|157151005|ref|YP_001450488.1| ribonuclease HII [Streptococcus gordonii str. Challis substr. CH1]
 gi|189043666|sp|A8AXH8|RNH2_STRGC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157075799|gb|ABV10482.1| Ribonuclease HII (RNase HII) [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 254

 Score =  263 bits (672), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 87/196 (44%), Positives = 120/196 (61%), Gaps = 3/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  + +     +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  KK +E+Y
Sbjct: 59  RYEKELYQSGYQAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEIY 118

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           + +   A+ + I       IDK NI++AT  A+  A+  L + P   LID   +  D+  
Sbjct: 119 QAVMDKALAVGIGLMDSDIIDKVNIYEATKLAMKEALSKLPLKPDYLLIDAMKL--DVEI 176

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ SLSIAAASI+AKVTRDRLM    K++P Y F  + GY T +H + ++  
Sbjct: 177 PQESIIKGDANSLSIAAASIVAKVTRDRLMADYDKEFPGYAFAQNAGYGTKRHLEGLEHY 236

Query: 192 GPSCIHRLTFRPLRNL 207
           G S IHR TF P++++
Sbjct: 237 GVSPIHRKTFEPVKSM 252


>gi|329117652|ref|ZP_08246369.1| ribonuclease HII [Streptococcus parauberis NCFD 2020]
 gi|326908057|gb|EGE54971.1| ribonuclease HII [Streptococcus parauberis NCFD 2020]
          Length = 257

 Score =  263 bits (672), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 86/200 (43%), Positives = 119/200 (59%), Gaps = 6/200 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  +  +    +AGIDEVGRG LAGPVV A +IL  N    G+NDSKKI   K E +
Sbjct: 59  LRYEKSLYAQGYQAIAGIDEVGRGPLAGPVVAACVILPKNCKITGLNDSKKIPKSKHEMI 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPE 127
           Y  +   AI + I   +++ ID+ NI++AT  A+  A+ NL    + P   LID   +  
Sbjct: 119 YNLVIEKAIAVGIGLMTNEVIDEVNIYQATKLAMQAAINNLEGDNLTPDFLLIDAMKLEN 178

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +P    ++IKGD+ SLSIAAASI+AKVTRDRLM    K YP Y F  + GY T  H + 
Sbjct: 179 SIP--QESIIKGDANSLSIAAASIVAKVTRDRLMVDYDKAYPGYDFAKNAGYGTKNHLEG 236

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           +++ G + IHR TF P++++
Sbjct: 237 LRKLGVTEIHRRTFEPVKSM 256


>gi|264679353|ref|YP_003279260.1| ribonuclease HII/HIII [Comamonas testosteroni CNB-2]
 gi|299532312|ref|ZP_07045705.1| ribonuclease HII [Comamonas testosteroni S44]
 gi|262209866|gb|ACY33964.1| ribonuclease HII/HIII [Comamonas testosteroni CNB-2]
 gi|298719720|gb|EFI60684.1| ribonuclease HII [Comamonas testosteroni S44]
          Length = 237

 Score =  263 bits (672), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 88/182 (48%), Positives = 119/182 (65%), Gaps = 2/182 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82
             VAG+DE GRG LAGPVV AA+ILD      G+NDSKK++  +RE LY++I + A+   
Sbjct: 17  GLVAGVDEAGRGPLAGPVVAAAVILDDLKPIAGLNDSKKLTANRREVLYDEIRAKALCFC 76

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+ AS Q ID+ NI KATL A+  AV  L++ P   L+DG  +P+ +  QA A++KGDS+
Sbjct: 77  IAQASVQEIDEINILKATLLAMRRAVMGLRLKPVLVLVDGNQLPQ-IDVQAEAIVKGDSL 135

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +I+AASI+AKVTRDR       +YP YGF  H GY TA H Q ++  G +  HR +F 
Sbjct: 136 VQAISAASILAKVTRDRWCERLDAQYPQYGFAGHKGYGTAAHLQALRAHGATAEHRRSFA 195

Query: 203 PL 204
           P+
Sbjct: 196 PV 197


>gi|167037678|ref|YP_001665256.1| ribonuclease HII [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320116093|ref|YP_004186252.1| Ribonuclease H [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856512|gb|ABY94920.1| Ribonuclease H [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929184|gb|ADV79869.1| Ribonuclease H [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 242

 Score =  263 bits (672), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/189 (44%), Positives = 114/189 (60%), Gaps = 2/189 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  + + N+  +AG+DE GRG L GPVV A +IL        INDSKK+S +KRE L E
Sbjct: 48  YENQLYQLNLNFIAGVDEAGRGPLVGPVVAACVILPKEVFIPEINDSKKLSEEKREVLSE 107

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   AI  +I     + IDK NI  AT  A+  A+  +Q      L+D  +IP+ +   
Sbjct: 108 VIKKVAISYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQ-IEIN 166

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             A++KGDS S+SIAAASI+AKV RD++M+  HK YP Y F+ + GY T +H + +K+ G
Sbjct: 167 QKAIVKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYG 226

Query: 193 PSCIHRLTF 201
           P  IHR TF
Sbjct: 227 PCPIHRKTF 235


>gi|319405354|emb|CBI78971.1| Ribonuclease HII [Bartonella sp. AR 15-3]
          Length = 212

 Score =  263 bits (672), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 104/208 (50%), Positives = 143/208 (68%), Gaps = 4/208 (1%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           MF  ++P +P+F  E  +++K  + VAG+DEVGRG LAGPVV AA++LD + IP G+NDS
Sbjct: 1   MF--NVPFQPNFSYELDLQKKGFFYVAGVDEVGRGPLAGPVVTAAVVLDKSRIPEGLNDS 58

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           KK+S ++R  LY +I  +A+ IS++S   + IDK +I KATL+A+   V  L +    AL
Sbjct: 59  KKLSRQQRNRLYYEILQNALAISVASLCARTIDKSDIRKATLEAMRRCVTGLAISAHYAL 118

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           IDGR IP +LPC A A+IKGD  S+SIAAASIIAKV RDR+M+ A + Y +Y  + HVGY
Sbjct: 119 IDGRDIPSNLPCPAIALIKGDQSSVSIAAASIIAKVIRDRMMQYAGRVYQNYDLEKHVGY 178

Query: 180 PTAKHQQVIKEKGPS-CIHRLTFRPLRN 206
            T  H+  I + GP   +HR +F PL+ 
Sbjct: 179 GTVAHRAAIDKYGPIVRLHRYSFSPLKE 206


>gi|262276513|ref|ZP_06054322.1| ribonuclease HII [Grimontia hollisae CIP 101886]
 gi|262220321|gb|EEY71637.1| ribonuclease HII [Grimontia hollisae CIP 101886]
          Length = 200

 Score =  263 bits (672), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 86/184 (46%), Positives = 112/184 (60%), Gaps = 1/184 (0%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK++ KKR  L+E+I   A+  S
Sbjct: 12  RLIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTDKKRAVLFEEIKEKALAWS 71

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A  + ID+ NI  AT+ A+  AV  L + P   LIDG  +P+ L   A AV+KGD  
Sbjct: 72  LGRAEPEEIDELNILSATMLAMERAVAGLNIKPDFVLIDGNRVPQGLTVPAQAVVKGDLR 131

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKV RDR M     KYP YGF  H GYPT  H + +   G    HR +F+
Sbjct: 132 VAEISAASILAKVVRDREMEALDAKYPQYGFAKHKGYPTKVHFEALATHGAILEHRKSFK 191

Query: 203 PLRN 206
           P++ 
Sbjct: 192 PVKK 195


>gi|256750728|ref|ZP_05491613.1| Ribonuclease H [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750311|gb|EEU63330.1| Ribonuclease H [Thermoanaerobacter ethanolicus CCSD1]
          Length = 242

 Score =  263 bits (672), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 83/189 (43%), Positives = 113/189 (59%), Gaps = 2/189 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  + + N+  +AG+DE GRG L GPVV A +I   +     INDSKK+S +KRE L E
Sbjct: 48  YENQLYQLNLNFIAGVDEAGRGPLVGPVVAACVIFPKDVFIPEINDSKKLSEEKREVLSE 107

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   AI  S      + IDK NI  AT  A+  A+  +Q      L+D  +IP+ +   
Sbjct: 108 VIKKVAISYSFGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQ-IEIN 166

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             A++KGDS S+SIAAASI+AKV RD++M+  HK YP Y F+ + GY T +H + +K+ G
Sbjct: 167 QKAIVKGDSKSISIAAASILAKVERDKMMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYG 226

Query: 193 PSCIHRLTF 201
           P  IHR TF
Sbjct: 227 PCPIHRKTF 235


>gi|113461500|ref|YP_719569.1| ribonuclease HII [Haemophilus somnus 129PT]
 gi|122945377|sp|Q0I4M6|RNH2_HAES1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|112823543|gb|ABI25632.1| RNase HII [Haemophilus somnus 129PT]
          Length = 211

 Score =  263 bits (672), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 90/187 (48%), Positives = 120/187 (64%), Gaps = 2/187 (1%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
           N+  +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L E+I   A+ 
Sbjct: 9   NVEFIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLKDSKKLSEKKRLLLAEEIKQKALA 68

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            S+  A    IDK NI  AT+ A+  AVENL++ P   L+DG  IP+ LP  A AVIKGD
Sbjct: 69  WSLGRAEPAEIDKLNILHATMLAMQRAVENLKIQPHFVLVDGNRIPQ-LPMSAQAVIKGD 127

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S+   I+AASI+AKV RD+ M    ++YP+Y F  H GYPT  H + + + G    +R +
Sbjct: 128 SLVAEISAASILAKVARDQEMIELDRRYPEYAFAQHKGYPTKLHLERLAQFGVLPEYRRS 187

Query: 201 FRPLRNL 207
           F P++ L
Sbjct: 188 FAPVKKL 194


>gi|328467373|gb|EGF38451.1| ribonuclease HII [Lactobacillus helveticus MTCC 5463]
          Length = 249

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 94/195 (48%), Positives = 124/195 (63%), Gaps = 4/195 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E    +K+   VAG+DEVGRG LAGPVV AA+I+D N     +NDSKK+S +KR +
Sbjct: 54  RFSYEKQFWQKD-ELVAGVDEVGRGPLAGPVVTAAVIIDHNFDLLEVNDSKKLSPEKRLQ 112

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY KI S A+ + I   S   ID+ NI++A   A+  AV+ L V P + L+D  ++P DL
Sbjct: 113 LYPKILSEAVSVGIGVKSAAVIDQINIYEADRQAMAQAVKALDVKPNALLVDAMNVPVDL 172

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +IKGD+ S SIAAASI+AKV RD+LM    K YP YGF  + GY T +H   +K
Sbjct: 173 P--QIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFPRNAGYGTKEHIDALK 230

Query: 190 EKGPSCIHRLTFRPL 204
           + GP+ IHR TF P+
Sbjct: 231 KYGPTPIHRKTFAPV 245


>gi|15675138|ref|NP_269312.1| ribonuclease HII [Streptococcus pyogenes M1 GAS]
 gi|32171707|sp|Q99ZM6|RNH2_STRP1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|13622298|gb|AAK34033.1| putative ribonuclease HII [Streptococcus pyogenes M1 GAS]
          Length = 263

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/200 (41%), Positives = 120/200 (60%), Gaps = 6/200 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +K    +AGIDEVGRG LAGPVV A +IL       G+NDSKKI   K E +
Sbjct: 59  LSYEKALYKKGYKAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKAKHETI 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127
           Y+ +   A+ I I    +Q ID+ NI++AT  A+  A++ L+     P   LID  ++  
Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTL-- 176

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           D+     +++KGD+ SLSIAAASI+AKVTRD++M    + +P Y F  + GY T +H Q 
Sbjct: 177 DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYDFAKNAGYGTKEHLQG 236

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           +K  G + IHR +F P++++
Sbjct: 237 LKAYGITPIHRKSFEPVKSM 256


>gi|322389594|ref|ZP_08063143.1| ribonuclease HII [Streptococcus parasanguinis ATCC 903]
 gi|321143720|gb|EFX39149.1| ribonuclease HII [Streptococcus parasanguinis ATCC 903]
          Length = 255

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 84/207 (40%), Positives = 122/207 (58%), Gaps = 3/207 (1%)

Query: 2   FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61
               +        E  +  + +  +AG+DEVGRG LAGPVV AA+IL  N    G+NDSK
Sbjct: 48  VDEDLRLEKMLAYEKELYTQGIHLIAGVDEVGRGPLAGPVVAAAVILPENCKIPGLNDSK 107

Query: 62  KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           KI   K   +Y+ +   A+ + I    +Q ID+ NI++AT  A+  A++ L   P+  LI
Sbjct: 108 KIPKSKHHAIYQAVLDQALSVGIGIKDNQVIDQVNIYEATKLAMLEAIQELDPRPQHLLI 167

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           D   +  DLP    ++IKGD+ SLSIAAASI+AKVTRD++M     +YP Y F  +VGY 
Sbjct: 168 DAMRL--DLPIPQTSIIKGDANSLSIAAASIVAKVTRDQMMEEFDCEYPGYDFTQNVGYG 225

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           TA H   + + G + IHR +F P++++
Sbjct: 226 TANHLAGLHKLGVTPIHRRSFEPIKSM 252


>gi|46446292|ref|YP_007657.1| ribonuclease HII [Candidatus Protochlamydia amoebophila UWE25]
 gi|81627372|sp|Q6MDG7|RNH2_PARUW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|46399933|emb|CAF23382.1| putative ribonuclease HII [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 222

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 90/197 (45%), Positives = 125/197 (63%), Gaps = 5/197 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E     +    +AGIDE GRG LAGPVV AA IL    +   INDSKK+S K RE L+E
Sbjct: 19  YEKRAFSQGYQLIAGIDEAGRGPLAGPVVAAACILPKGLLVPQINDSKKLSPKVRERLFE 78

Query: 74  KITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-EDLP 130
           ++T+ + +   I       ID+ NI++AT+ A+  A++ L V P   L+DG ++P  DLP
Sbjct: 79  RLTTDSAVRYGIGIIGQAEIDRVNIYQATILAMLMAIQQLPVTPDYVLVDGMNLPHPDLP 138

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
           C    +IKGD +S SIAAASIIAK TRDRLM   H+++P YGF+ H GY T  H + + +
Sbjct: 139 C--LKIIKGDQLSQSIAAASIIAKETRDRLMCQYHREWPGYGFNQHKGYATELHLEALFK 196

Query: 191 KGPSCIHRLTFRPLRNL 207
           +GP  IHR +F P++++
Sbjct: 197 QGPCPIHRRSFDPIKSM 213


>gi|21910354|ref|NP_664622.1| ribonuclease HII [Streptococcus pyogenes MGAS315]
 gi|28895931|ref|NP_802281.1| ribonuclease HII [Streptococcus pyogenes SSI-1]
 gi|32171668|sp|Q8K7G7|RNH2_STRP3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|21904551|gb|AAM79425.1| putative ribonuclease HII [Streptococcus pyogenes MGAS315]
 gi|28811181|dbj|BAC64114.1| putative ribonuclease HII [Streptococcus pyogenes SSI-1]
          Length = 263

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/200 (41%), Positives = 122/200 (61%), Gaps = 6/200 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++    +AGIDEVGRG LAGPVV A +IL  +    G+NDSKKI   K E +
Sbjct: 59  LSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKAKHETI 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127
           Y+ +   A+ I I    +Q ID+ NI++AT  A+  A++ L+     P   LID  ++  
Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTL-- 176

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           D+     +++KGD+ SLSIAAASI+AKVTRD++M    + +P YGF  + GY T +H Q 
Sbjct: 177 DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQE 236

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           +K  G + IHR +F P++++
Sbjct: 237 LKAYGITPIHRKSFEPVKSM 256


>gi|312866631|ref|ZP_07726846.1| ribonuclease HII [Streptococcus parasanguinis F0405]
 gi|311097930|gb|EFQ56159.1| ribonuclease HII [Streptococcus parasanguinis F0405]
          Length = 255

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 87/197 (44%), Positives = 122/197 (61%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E     + M  +AG+DEVGRG LAGPVV AA+IL       G+NDSKKI   K +E+
Sbjct: 58  LTYEKECYARGMELIAGVDEVGRGPLAGPVVAAAVILPKACKIPGLNDSKKIPKSKHKEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           YE +  +AI I I    +  ID+ NI++AT  A+  A+  L   P+  LID   +  DLP
Sbjct: 118 YEAVLQNAIAIGIGIKDNHVIDQVNIYEATKLAMMEAIGQLDPQPQHLLIDAMKL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD++M    ++YP Y F  + GY TAKH   +++
Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDQMMEEFDREYPGYDFAQNAGYGTAKHLDGLEQ 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR +F P++++
Sbjct: 236 LGVTPIHRRSFEPVKSM 252


>gi|260101617|ref|ZP_05751854.1| ribonuclease HII [Lactobacillus helveticus DSM 20075]
 gi|260084580|gb|EEW68700.1| ribonuclease HII [Lactobacillus helveticus DSM 20075]
          Length = 250

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 94/198 (47%), Positives = 125/198 (63%), Gaps = 4/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E    +K+   VAG+DEVGRG LAGPVV AA+I+D N     +NDSKK+S +KR +
Sbjct: 54  RFSYEKQFWQKD-ELVAGVDEVGRGPLAGPVVTAAVIIDHNFDLLEVNDSKKLSPEKRLQ 112

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY KI S A+ + I   S   ID+ NI++A   A+  AV+ L V P + L+D  ++P DL
Sbjct: 113 LYPKILSEAVSVGIGVKSAAVIDQINIYEADRQAMAQAVKALDVKPNALLVDAMNVPVDL 172

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +IKGD+ S SIAAASI+AKV RD+LM    K YP YGF  + GY T +H   +K
Sbjct: 173 P--QIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFPRNAGYGTKEHIDALK 230

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + GP+ IHR TF P+ + 
Sbjct: 231 KYGPTPIHRKTFAPVSDF 248


>gi|49475220|ref|YP_033261.1| ribonuclease HII [Bartonella henselae str. Houston-1]
 gi|81648141|sp|Q6G4E3|RNH2_BARHE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|49238025|emb|CAF27232.1| Ribonuclease HII [Bartonella henselae str. Houston-1]
          Length = 223

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 103/204 (50%), Positives = 141/204 (69%), Gaps = 2/204 (0%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           ++P +P+F  E  ++++    +AG+DEVGRG LAGPVV AA+ILD N IP G+NDSKK+S
Sbjct: 13  NLPFKPNFACELDLQKQGFLYIAGVDEVGRGPLAGPVVTAAVILDKNRIPDGLNDSKKLS 72

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            ++R ELY +I  SA+ ISI+S   + ID+ +I KATL+A+   +  L V    AL+DGR
Sbjct: 73  AQRRYELYHEILQSALAISIASLCARTIDQSDIRKATLEAMRRCIRGLAVPAHYALVDGR 132

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            IP  LPC A A+IKGD  S+SIAAASIIAKVTRD++M  A + Y  YG + HVGY T  
Sbjct: 133 DIPFQLPCPATALIKGDQRSVSIAAASIIAKVTRDQMMECAGQVYKGYGLEKHVGYATLA 192

Query: 184 HQQVIKEKGPSC-IHRLTFRPLRN 206
           H+  +++ GP   +HR +F PL+ 
Sbjct: 193 HRAALEKYGPVVGLHRYSFAPLKK 216


>gi|325686018|gb|EGD28077.1| ribonuclease HII [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 256

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 90/198 (45%), Positives = 121/198 (61%), Gaps = 4/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E     K    VAG+DEVGRG LAGPVV AA+IL  +     +NDSKK+S +KR  
Sbjct: 55  RFSYEKDFWAKG-QLVAGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLV 113

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY KI   A+ + +    ++ ID+ NI++A   A+  AVE L   P + L+D  ++P DL
Sbjct: 114 LYPKILQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSTRPDALLVDAMNVPVDL 173

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +IKGD+ S SIAAASI+AKV RD LM    + YPDY FD + GY T  H + ++
Sbjct: 174 P--QLELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALR 231

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + GP+ IHRLTF P+  +
Sbjct: 232 KYGPTPIHRLTFSPVSEM 249


>gi|15964592|ref|NP_384945.1| ribonuclease HII [Sinorhizobium meliloti 1021]
 gi|307309338|ref|ZP_07589001.1| Ribonuclease H [Sinorhizobium meliloti BL225C]
 gi|307320074|ref|ZP_07599495.1| Ribonuclease H [Sinorhizobium meliloti AK83]
 gi|39932445|sp|Q92RM4|RNH2_RHIME RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|15073770|emb|CAC45411.1| Probable ribonuclease HII protein [Sinorhizobium meliloti 1021]
 gi|306894289|gb|EFN25054.1| Ribonuclease H [Sinorhizobium meliloti AK83]
 gi|306900207|gb|EFN30825.1| Ribonuclease H [Sinorhizobium meliloti BL225C]
          Length = 216

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 104/207 (50%), Positives = 139/207 (67%), Gaps = 1/207 (0%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           +F    P  P F  E        WPVAG DE GRG LAGPVV AA+ILDP+ IP G+NDS
Sbjct: 11  LFPLQAPV-PDFTFERAAHRDGFWPVAGADEAGRGPLAGPVVAAAVILDPDAIPAGLNDS 69

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K ++ ++RE L+E+I +++ +SI+S+S   ID  +I KA+LDA+  AV  L++  R  L+
Sbjct: 70  KLLTAEQREALFEEILATSTVSIASSSSARIDTTDILKASLDAMRRAVHGLELAARIVLV 129

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DGR +P  L C A A++KGDS S+SIAAASI+AKVTRDR+M  A   +P YGF  H GY 
Sbjct: 130 DGRDVPPGLSCHAKAIVKGDSRSVSIAAASIVAKVTRDRMMARADATFPLYGFAHHAGYA 189

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           T KH+  I+  GP  +HR++FRP R +
Sbjct: 190 TVKHRTAIESHGPCSLHRMSFRPFRQV 216


>gi|221066099|ref|ZP_03542204.1| Ribonuclease H [Comamonas testosteroni KF-1]
 gi|220711122|gb|EED66490.1| Ribonuclease H [Comamonas testosteroni KF-1]
          Length = 243

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 88/182 (48%), Positives = 119/182 (65%), Gaps = 2/182 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82
             VAG+DE GRG LAGPVV AA+ILD      G+NDSKK++  +RE LY++I + A+   
Sbjct: 23  GLVAGVDEAGRGPLAGPVVAAAVILDDMKPIAGLNDSKKLTANRREVLYDEIRAKALCFC 82

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+ AS Q ID+ NI KATL A+  AV  L++ P   L+DG  +P+ +  QA A++KGDS+
Sbjct: 83  IAQASVQEIDEINILKATLLAMRRAVMGLRLKPVLVLVDGNQLPQ-IDVQAEAIVKGDSL 141

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +I+AASI+AKVTRDR       +YP YGF  H GY TA H Q ++  G +  HR +F 
Sbjct: 142 VQAISAASILAKVTRDRWCERLDAQYPQYGFAGHKGYGTAAHLQALRAHGATAEHRRSFA 201

Query: 203 PL 204
           P+
Sbjct: 202 PV 203


>gi|319408204|emb|CBI81857.1| Ribonuclease HII [Bartonella schoenbuchensis R1]
          Length = 223

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 100/204 (49%), Positives = 137/204 (67%), Gaps = 2/204 (0%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           ++P +P F  E  + ++  + +AG+DEVGRG LAGPVV AA+ILD N+IP G+NDSKK S
Sbjct: 13  NVPLQPDFSHELDLHKQGFFYIAGVDEVGRGPLAGPVVTAAVILDKNHIPEGLNDSKKFS 72

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            ++R +LY KI  +A+ IS++S   + ID+ +I KATL+A+   V  L +     L+DGR
Sbjct: 73  AQQRNQLYGKILQNALAISVASICARVIDQSDIRKATLEAMRRCVVGLSIPAHYVLVDGR 132

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            IP  L C A A+IKGD  S+SIAAASI+AKVTRDR+M  A + Y  YG + HVGY T  
Sbjct: 133 DIPPHLLCPATALIKGDQRSVSIAAASIVAKVTRDRMMECAGRVYESYGLEKHVGYATVA 192

Query: 184 HQQVIKEKGPS-CIHRLTFRPLRN 206
           H+  I + GP   +HR +F PL+ 
Sbjct: 193 HRTAIAKYGPILGLHRYSFAPLKE 216


>gi|229588817|ref|YP_002870936.1| ribonuclease HII [Pseudomonas fluorescens SBW25]
 gi|229360683|emb|CAY47541.1| ribonuclease HII [Pseudomonas fluorescens SBW25]
          Length = 206

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 89/191 (46%), Positives = 120/191 (62%), Gaps = 2/191 (1%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76
            +  +    VAG+DEVGRG L G VV AA+ILDPN    G+NDSKK++  +RE+LY++I 
Sbjct: 6   SLVAQAHELVAGVDEVGRGPLCGAVVTAAVILDPNRPILGLNDSKKLTEARREKLYDEIC 65

Query: 77  SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135
             A+   I+ A  + ID+ NI  AT+ A+  AVE L + P+ A+IDG   P+ L   + A
Sbjct: 66  EKALSWHIARAEVEEIDELNILHATMLAMQRAVEGLHITPKMAMIDGNRCPK-LAMPSEA 124

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           V+KGDS   +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ 
Sbjct: 125 VVKGDSKVPAIAAASILAKVSRDREMAAFELIYPGYGMGGHKGYPTPVHLEALARLGPTP 184

Query: 196 IHRLTFRPLRN 206
           IHR +F P+R 
Sbjct: 185 IHRRSFAPVRE 195


>gi|300361596|ref|ZP_07057773.1| ribonuclease H [Lactobacillus gasseri JV-V03]
 gi|300354215|gb|EFJ70086.1| ribonuclease H [Lactobacillus gasseri JV-V03]
          Length = 250

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 88/197 (44%), Positives = 127/197 (64%), Gaps = 4/197 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E    +KN   VAG+DEVGRG LAGPVV AA+IL  N     +NDSKK+S KKR+ 
Sbjct: 54  RFSYEKEFWQKN-QLVAGVDEVGRGPLAGPVVTAAVILPHNFDLIDVNDSKKLSPKKRKA 112

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L+ +I + A+ +S+  A++  ID+ NI++A   A+ HAV+ L+V P + L+D  ++P ++
Sbjct: 113 LFPQILAKAVSVSVGLANNDVIDRINIYEADRLAMAHAVQGLKVKPAALLVDAMNVPLNI 172

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +I GD+ S SIAAASI+AKV RD LM    + YP+Y F  + GY T +H + +K
Sbjct: 173 P--QIKLIHGDAKSNSIAAASIVAKVFRDNLMDAYGEVYPEYDFKHNAGYGTREHMEALK 230

Query: 190 EKGPSCIHRLTFRPLRN 206
           + GP+ IHR +F P+  
Sbjct: 231 KYGPTPIHRRSFAPVSE 247


>gi|327470026|gb|EGF15490.1| ribonuclease HII [Streptococcus sanguinis SK330]
          Length = 254

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 87/197 (44%), Positives = 122/197 (61%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            + E  + +     +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  KK +E+
Sbjct: 58  LQHEKELYKAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ +   A+ + I    +  IDK NI++AT  A+  A+  L++ P   LID   I  D+ 
Sbjct: 118 YQAVLDKALAVGIGLMDNDIIDKVNIYEATKLAMKEALSKLRLKPDYLLIDA--IKLDVE 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD+LM    K++P Y F  + GY T  H Q ++ 
Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMADYDKEFPGYDFAQNAGYGTKSHLQGLER 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR TF P++++
Sbjct: 236 HGVTPIHRKTFEPIKSM 252


>gi|164688555|ref|ZP_02212583.1| hypothetical protein CLOBAR_02200 [Clostridium bartlettii DSM
           16795]
 gi|164602968|gb|EDQ96433.1| hypothetical protein CLOBAR_02200 [Clostridium bartlettii DSM
           16795]
          Length = 255

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 83/195 (42%), Positives = 116/195 (59%), Gaps = 4/195 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E          + G+DE GRG LAGPVV + ++ +       INDSKK+S  KREEL++
Sbjct: 63  FENEGYANGYLYIGGVDEAGRGPLAGPVVASVVVFEKGTKIPYINDSKKLSEAKREELFD 122

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   A+   I    ++ ID++NI  AT  A+  A+  L+  P   L+D  +IP DL  +
Sbjct: 123 IIKEQALDYGIGIVDNEEIDEYNILNATYMAMNKALNALKKKPDYLLLDAVTIP-DLDIK 181

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
            F +IKGD+ S+SIA ASI+AKVTRDRLM    + YP YGF  H GY T +H + I++ G
Sbjct: 182 QFPIIKGDAKSISIAGASILAKVTRDRLMYKYDEIYPQYGFKHHKGYGTKEHYEAIEKYG 241

Query: 193 PSCIHRLTFRPLRNL 207
            + IHR +F  L+N+
Sbjct: 242 ITPIHRKSF--LKNV 254


>gi|42519032|ref|NP_964962.1| ribonuclease HII [Lactobacillus johnsonii NCC 533]
 gi|73917610|sp|Q74JK1|RNH2_LACJO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|41583319|gb|AAS08928.1| ribonuclease HII [Lactobacillus johnsonii NCC 533]
          Length = 250

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 86/199 (43%), Positives = 127/199 (63%), Gaps = 4/199 (2%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F  E    +K+   VAG+DEVGRG LAGPVV AA+IL  +     +NDSKK+S KKR
Sbjct: 52  QSRFSYEKEFWQKD-QLVAGVDEVGRGPLAGPVVTAAVILPHDFDLIDVNDSKKLSPKKR 110

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           + L+ KI   A+ +S+  A++  ID+ NI++A   A+ HAV+ L+V P + L+D  ++P 
Sbjct: 111 QALFPKILEKAVSVSVGLANNDVIDQINIYEADRLAMAHAVQGLKVKPDALLVDAMNVPL 170

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           ++P     +I GD+ S SIAAASI+AKV RD LM    + YP+Y F  + GY T +H + 
Sbjct: 171 NIP--QVKLIHGDAKSNSIAAASIVAKVFRDNLMDAYGELYPEYDFKHNAGYGTREHMEA 228

Query: 188 IKEKGPSCIHRLTFRPLRN 206
           +++ GP+ IHR +F P+  
Sbjct: 229 LEKYGPTPIHRRSFAPVSE 247


>gi|15603863|ref|NP_246937.1| ribonuclease HII [Pasteurella multocida subsp. multocida str. Pm70]
 gi|13431849|sp|P57986|RNH2_PASMU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|12722439|gb|AAK04082.1| RnhB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 197

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 91/188 (48%), Positives = 120/188 (63%), Gaps = 2/188 (1%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           K +  +AG+DEVGRG L G VV AA+ILDP+    G+NDSKK+S KKR  L E+I   A+
Sbjct: 7   KGVELIAGVDEVGRGPLVGAVVTAAVILDPHQPILGLNDSKKLSEKKRLLLAEEIKQKAL 66

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             S+  A  + ID+ NI  AT+ A+  AVENL++ P   L+DG  +PE L   A A++KG
Sbjct: 67  AWSLGRAEAEEIDQLNILHATMLAMKRAVENLKIQPHFVLVDGNRVPE-LMIPAQAIVKG 125

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D +   I+AASI+AKV RD+ M    K+YP+Y F  H GYPTA H   + E GP   HR 
Sbjct: 126 DGLVAEISAASILAKVARDQEMAELDKRYPEYAFAQHKGYPTALHLAKLAELGPLAQHRR 185

Query: 200 TFRPLRNL 207
           +F P+R L
Sbjct: 186 SFAPVRKL 193


>gi|319638850|ref|ZP_07993608.1| ribonuclease HII [Neisseria mucosa C102]
 gi|317399754|gb|EFV80417.1| ribonuclease HII [Neisseria mucosa C102]
          Length = 230

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/182 (45%), Positives = 109/182 (59%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG L G V  AA+IL  +    G+ DSKK+S KKR+ L + I   A+  SI+ 
Sbjct: 40  AGVDEAGRGPLVGSVFAAAVILPEHFDLPGLTDSKKLSEKKRDMLAQMIKEQAVAWSIAF 99

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A    I + NI  AT+ A+  A+E L V+P    IDG  +P+DL   A AV+KGDS  + 
Sbjct: 100 ADPDEILQLNILHATMAAMKRAIEGLSVVPDKVWIDGNRVPKDLNVPAEAVVKGDSKIIE 159

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AAS++AK  RD  M    K+YP YGFD H GY TA+H   +K+ G    HR  F P++
Sbjct: 160 ISAASVLAKTARDAEMYELAKRYPQYGFDRHKGYGTAQHLAALKQYGVLPEHRRDFAPVK 219

Query: 206 NL 207
            L
Sbjct: 220 TL 221


>gi|197119787|ref|YP_002140214.1| ribonuclease HII [Geobacter bemidjiensis Bem]
 gi|254807977|sp|B5EBC6|RNH2_GEOBB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|197089147|gb|ACH40418.1| ribonuclease HII [Geobacter bemidjiensis Bem]
          Length = 230

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 98/210 (46%), Positives = 128/210 (60%), Gaps = 7/210 (3%)

Query: 1   MFCNSIPERP--HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN 58
           +F ++ PE P     LE     +  + +AGIDE GRG LAGPVV AA++L    +  G+N
Sbjct: 4   LFPDN-PEAPIDLLALEGQALRRGYFRIAGIDEAGRGPLAGPVVAAAVMLPAGLLLPGVN 62

Query: 59  DSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117
           DSK+++ +KREEL++ I   A+ + +    H  +D  NI +ATL A+  AV  L + P  
Sbjct: 63  DSKQLTEEKREELFDVIHREALAVGVGIGDHALVDSINILQATLSAMRDAVRALSITPGF 122

Query: 118 ALIDGRS-IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
            LIDG S IP ++P     V KGDS+SLSIAAASIIAKVTRDR+M     +YP YGF SH
Sbjct: 123 LLIDGISNIPMNIP--QRTVKKGDSLSLSIAAASIIAKVTRDRMMVEYDAQYPGYGFASH 180

Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
            GY  A H   I E GP  IHR TF  ++ 
Sbjct: 181 KGYGAASHLAAIAELGPCPIHRKTFSGVKE 210


>gi|29654636|ref|NP_820328.1| ribonuclease HII [Coxiella burnetii RSA 493]
 gi|153208943|ref|ZP_01947156.1| ribonuclease HII [Coxiella burnetii 'MSU Goat Q177']
 gi|154706026|ref|YP_001424775.1| ribonuclease HII [Coxiella burnetii Dugway 5J108-111]
 gi|161830417|ref|YP_001597185.1| ribonuclease HII [Coxiella burnetii RSA 331]
 gi|165924003|ref|ZP_02219835.1| ribonuclease HII [Coxiella burnetii RSA 334]
 gi|212218749|ref|YP_002305536.1| ribonuclease HII [Coxiella burnetii CbuK_Q154]
 gi|39932366|sp|Q83BZ8|RNH2_COXBU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|189043589|sp|A9KGD3|RNH2_COXBN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|189043590|sp|A9N8L5|RNH2_COXBR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238056774|sp|B6J7Z2|RNH2_COXB1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|29541904|gb|AAO90842.1| ribonuclease HII [Coxiella burnetii RSA 493]
 gi|120575601|gb|EAX32225.1| ribonuclease HII [Coxiella burnetii 'MSU Goat Q177']
 gi|154355312|gb|ABS76774.1| ribonuclease HII [Coxiella burnetii Dugway 5J108-111]
 gi|161762284|gb|ABX77926.1| ribonuclease HII [Coxiella burnetii RSA 331]
 gi|165916548|gb|EDR35152.1| ribonuclease HII [Coxiella burnetii RSA 334]
 gi|212013011|gb|ACJ20391.1| ribonuclease HII [Coxiella burnetii CbuK_Q154]
          Length = 202

 Score =  262 bits (670), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 90/186 (48%), Positives = 120/186 (64%), Gaps = 2/186 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DE GRG LAGPV+ AA+IL+P  I  G+ DSKK+S KKREELYEKI ++    +I
Sbjct: 13  LIAGVDEAGRGPLAGPVITAAVILNPEIIIEGLADSKKLSLKKREELYEKIITNCKAFAI 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI +ATL A+  A+  L + P   LIDG   P DLP +  A+++GD   
Sbjct: 73  ARADVEEIDRLNIFRATLLAMQRAINQLSIQPDKVLIDGHCCP-DLPYETQAIVQGDQNV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AKVTRDR M     +YPDYGF  H GY T  H   I   G + +HR +F P
Sbjct: 132 PAISAASILAKVTRDREMLKYDAQYPDYGFAIHKGYGTKAHLAAIHRFGITPVHRKSFEP 191

Query: 204 LRNLSV 209
           +R L +
Sbjct: 192 VRQLKL 197


>gi|294648443|ref|ZP_06725932.1| ribonuclease HII [Acinetobacter haemolyticus ATCC 19194]
 gi|292825668|gb|EFF84382.1| ribonuclease HII [Acinetobacter haemolyticus ATCC 19194]
          Length = 200

 Score =  262 bits (670), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 86/190 (45%), Positives = 119/190 (62%), Gaps = 1/190 (0%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77
           + E+    +AG+DE GRG L G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I  
Sbjct: 7   LVERCNMTIAGVDEAGRGPLVGSVVAAAVILDPNNPIEGLNDSKKLTEKKREKLFAEIQE 66

Query: 78  SAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136
            A+  SI+ ASH  ID+ NI +AT  A+  AVE L   P   ++DG  IP+ +     A+
Sbjct: 67  KALAWSIAEASHVEIDEFNILQATFLAMRRAVEALATQPAKVIVDGNQIPKGINIPCEAI 126

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           + GD+    I+AASI+AKVTRDR M+    +YP+YGF  H GYPT  H + I   G    
Sbjct: 127 VGGDATHAEISAASILAKVTRDRQMKALDLEYPNYGFAKHKGYPTKAHFEAIAIHGVIDE 186

Query: 197 HRLTFRPLRN 206
           HR ++ P++ 
Sbjct: 187 HRRSYGPVKK 196


>gi|167040339|ref|YP_001663324.1| ribonuclease HII [Thermoanaerobacter sp. X514]
 gi|300914423|ref|ZP_07131739.1| Ribonuclease H [Thermoanaerobacter sp. X561]
 gi|307724341|ref|YP_003904092.1| Ribonuclease H [Thermoanaerobacter sp. X513]
 gi|166854579|gb|ABY92988.1| Ribonuclease H [Thermoanaerobacter sp. X514]
 gi|300889358|gb|EFK84504.1| Ribonuclease H [Thermoanaerobacter sp. X561]
 gi|307581402|gb|ADN54801.1| Ribonuclease H [Thermoanaerobacter sp. X513]
          Length = 242

 Score =  262 bits (670), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 84/189 (44%), Positives = 114/189 (60%), Gaps = 2/189 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  + + N+  +AG+DE GRG L GPVV A +IL        INDSKK+S +KRE L E
Sbjct: 48  YENQLYQLNLNFIAGVDEAGRGPLVGPVVAACVILPKEVFIPEINDSKKLSEEKREVLSE 107

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   AI  +I     + IDK NI  AT  A+  A+  +Q      L+D  +IP+ +   
Sbjct: 108 VIKKVAISYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQ-IEIN 166

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             A++KGDS S+SIAAASI+AKV RD++M+  HK YP Y F+ + GY T +H + +K+ G
Sbjct: 167 QKAIVKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYG 226

Query: 193 PSCIHRLTF 201
           P  IHR TF
Sbjct: 227 PCPIHRKTF 235


>gi|154483562|ref|ZP_02026010.1| hypothetical protein EUBVEN_01266 [Eubacterium ventriosum ATCC
           27560]
 gi|149735472|gb|EDM51358.1| hypothetical protein EUBVEN_01266 [Eubacterium ventriosum ATCC
           27560]
          Length = 251

 Score =  262 bits (670), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 90/190 (47%), Positives = 119/190 (62%), Gaps = 4/190 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E      +   + GIDEVGRG LAGPVV  A+IL  N     INDSKK+S KKREELY
Sbjct: 60  EFERKY--SDYEFICGIDEVGRGPLAGPVVAGAVILPKNCDILYINDSKKLSAKKREELY 117

Query: 73  EKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E I   A+ +  +  S + ID+ NI +AT +A+  A+  L+  P   L D  +IP  +P 
Sbjct: 118 EVIMEKAVCAKTAVVSPKVIDEINILQATYEAMRQAISMLEPQPTLLLNDAVNIP-GVPM 176

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +  ++IKGD+ S+SI AASIIAKVTRD +M    K YP+Y F S+ GY +AKH + +K+ 
Sbjct: 177 KQVSIIKGDAKSISIGAASIIAKVTRDAMMVEYDKIYPEYDFASNKGYGSAKHIEALKKY 236

Query: 192 GPSCIHRLTF 201
           GP  IHR +F
Sbjct: 237 GPCPIHRKSF 246


>gi|315222958|ref|ZP_07864837.1| ribonuclease HII [Streptococcus anginosus F0211]
 gi|315187908|gb|EFU21644.1| ribonuclease HII [Streptococcus anginosus F0211]
          Length = 260

 Score =  262 bits (670), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 92/197 (46%), Positives = 123/197 (62%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  +       +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKKI  KK EE+
Sbjct: 58  LRYEKELYATGCQYIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHEEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+++   A+ + I    +Q IDK NI++AT  A+  AV NL++ P+  LID   +  D+ 
Sbjct: 118 YQEVLKQAVAVGIGVKDNQVIDKVNIYEATKLAMLEAVGNLEISPQHLLIDAMQL--DVQ 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRDR+M      YP Y F  +VGY T  H   +K 
Sbjct: 176 VSQTSIIKGDANSLSIAAASIVAKVTRDRMMTDYELTYPGYDFTHNVGYGTQHHLDGLKR 235

Query: 191 KGPSCIHRLTFRPLRNL 207
           KG + IHR TF P++++
Sbjct: 236 KGITPIHRKTFEPIKSM 252


>gi|322507786|gb|ADX03240.1| rnhB [Acinetobacter baumannii 1656-2]
          Length = 188

 Score =  262 bits (670), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 84/184 (45%), Positives = 117/184 (63%), Gaps = 1/184 (0%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DE GRG L G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I   A+  S
Sbjct: 1   MFVAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWS 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+ A+H  ID+ NI +AT  A+  AVE L+  P+  ++DG  IP+ +     A++ GD+ 
Sbjct: 61  IAEATHAEIDELNILQATFLAMQRAVEGLKTQPQKVIVDGNQIPKGIIIPCEAIVGGDAS 120

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRDR M    ++YP +GF  H GYPT  H + I   G    HR ++ 
Sbjct: 121 HAEISAASILAKVTRDRQMAELDQQYPLFGFAKHQGYPTKAHFEAIAAHGVIDQHRRSYA 180

Query: 203 PLRN 206
           P++ 
Sbjct: 181 PVKR 184


>gi|123443471|ref|YP_001007444.1| ribonuclease HII [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|166226668|sp|A1JP66|RNH2_YERE8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|122090432|emb|CAL13300.1| ribonuclease HII [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 198

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 85/184 (46%), Positives = 115/184 (62%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++IT  A+  S+
Sbjct: 12  LIAGVDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEITDKALSWSL 71

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID+ NI  AT+ A+  AV  L + P   LIDG   P+ L   + AV+KGDS  
Sbjct: 72  GRAEPEEIDQLNILHATMLAMQRAVAGLHIAPDYVLIDGNRCPK-LAMPSLAVVKGDSRV 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M     ++P+YGF  H GYPTA H + +   G +  HR +F P
Sbjct: 131 AEISAASILAKVTRDREMTELDLQFPEYGFAQHKGYPTAVHLEKLTTFGATEHHRRSFGP 190

Query: 204 LRNL 207
           ++ +
Sbjct: 191 VKRV 194


>gi|332160606|ref|YP_004297183.1| ribonuclease HII [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325664836|gb|ADZ41480.1| ribonuclease HII [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330859613|emb|CBX69953.1| ribonuclease HII [Yersinia enterocolitica W22703]
          Length = 198

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 85/184 (46%), Positives = 114/184 (61%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++IT  A+  S+
Sbjct: 12  LIAGVDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEITDKALSWSL 71

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID+ NI  AT+ A+  AV  L + P   LIDG   P+ L   + AV+KGDS  
Sbjct: 72  GRAEPEEIDQLNILHATMLAMQRAVAGLHIAPDYVLIDGNRCPK-LTMPSLAVVKGDSRV 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M     ++P+YGF  H GYPTA H   +   G +  HR +F P
Sbjct: 131 AEISAASILAKVTRDREMTELDLQFPEYGFAQHKGYPTAVHLDKLTTFGATEHHRRSFGP 190

Query: 204 LRNL 207
           ++ +
Sbjct: 191 VKRV 194


>gi|224370178|ref|YP_002604342.1| RnhB [Desulfobacterium autotrophicum HRM2]
 gi|223692895|gb|ACN16178.1| RnhB [Desulfobacterium autotrophicum HRM2]
          Length = 197

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 90/194 (46%), Positives = 122/194 (62%), Gaps = 2/194 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +  E   +      +AG+DE GRG LAGPVV AA++LD      GI DSKK+S KKRE L
Sbjct: 2   WTFEHRAQAAGYNCIAGVDEAGRGPLAGPVVSAAVVLDDGFPDHGIMDSKKLSPKKRELL 61

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I   A+ + +  ASH  ID+ NI +A+L ++  AV  L + P   LIDG +   D  
Sbjct: 62  YDVIMDKALGVCVGIASHHEIDRINILRASLLSMRRAVNGLPLKPDYLLIDG-TFFIDSS 120

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            Q   ++KGD++S+SIAAASI+AKVTRDR+M    + YP YGF  H GYPT  H+Q + E
Sbjct: 121 IQQQVIVKGDALSVSIAAASIVAKVTRDRIMVDMDQLYPGYGFARHKGYPTKAHKQALVE 180

Query: 191 KGPSCIHRLTFRPL 204
            GPS +HR +F+ +
Sbjct: 181 LGPSPVHRYSFKGV 194


>gi|89070017|ref|ZP_01157348.1| ribonuclease HII [Oceanicola granulosus HTCC2516]
 gi|89044354|gb|EAR50492.1| ribonuclease HII [Oceanicola granulosus HTCC2516]
          Length = 211

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/197 (40%), Positives = 121/197 (61%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
               E    ++    +AG+DEVGRG LAGPV  AA++LDP  IP G+ DSK +   +RE 
Sbjct: 6   DLSFETRALQRGFARIAGVDEVGRGPLAGPVTAAAVVLDPARIPEGLADSKALPRARREA 65

Query: 71  LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           L  ++   A ++++  S   ID HNI +A+  A+  A+  L+     ALIDG  +P DL 
Sbjct: 66  LDAELREVACVAVAHCSVAEIDTHNILRASHIAMCRALAALEQTCDHALIDGNMLPRDLA 125

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
           C   A++KGD+  LSIAAASI+AKV RDR+M    +++P YG+++++GY T  H+  ++ 
Sbjct: 126 CSGEALVKGDARCLSIAAASIVAKVARDRIMVDLAQQHPGYGWETNMGYGTKGHRSALQN 185

Query: 191 KGPSCIHRLTFRPLRNL 207
            G +  HR +F P+ N+
Sbjct: 186 LGVTPHHRRSFAPIYNI 202


>gi|227893503|ref|ZP_04011308.1| ribonuclease HII [Lactobacillus ultunensis DSM 16047]
 gi|227864673|gb|EEJ72094.1| ribonuclease HII [Lactobacillus ultunensis DSM 16047]
          Length = 250

 Score =  261 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 89/199 (44%), Positives = 122/199 (61%), Gaps = 4/199 (2%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
             F  E    +KN   V G+DEVGRG LAGPVV AA+I+D +     +NDSKK+S ++R 
Sbjct: 53  KRFSYEKEFWQKN-QCVGGVDEVGRGPLAGPVVTAAVIIDQDFDLLDVNDSKKLSPERRL 111

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           +LY KI   A+ + I   S   ID+ NI++A   A+  AV  L + P + L+D   +  D
Sbjct: 112 KLYPKILEEAVSVGIGVKSPAVIDQINIYEADRQAMAQAVRALNIKPDALLVDAMDVSVD 171

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LP     +IKGD+ S SIAAASI+AKV RD+LM    K YP YGF ++ GY T +H + +
Sbjct: 172 LP--QVKLIKGDAKSNSIAAASIVAKVFRDKLMDDYAKIYPQYGFPNNAGYGTKEHIEAL 229

Query: 189 KEKGPSCIHRLTFRPLRNL 207
           K+ GP+ IHR TF P+ + 
Sbjct: 230 KKYGPTPIHRKTFAPVSDF 248


>gi|37524687|ref|NP_928031.1| ribonuclease HII [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|39932267|sp|Q7N8N3|RNH2_PHOLL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|36784112|emb|CAE12981.1| Ribonuclease HII (RNase HII) [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 196

 Score =  261 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 89/183 (48%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+RE LY +IT  A+  S+
Sbjct: 10  LIAGVDEVGRGPLVGAVVTAAVILDPLQPIVGLADSKKLSEKRREALYLEITEKALCWSL 69

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID+ NI  AT+ A+  AV NL + P   LIDG   P+ LP  A AVIKGD + 
Sbjct: 70  GRAEPAEIDQLNILHATMLAMQRAVANLPISPEYVLIDGNRCPK-LPMPAQAVIKGDGLV 128

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M    + +P+YGF  H GYPTA H + + + G +  HR +F P
Sbjct: 129 AEISAASIVAKVTRDREMAELDQLFPEYGFAKHKGYPTAFHLEKLVQLGATEHHRKSFAP 188

Query: 204 LRN 206
           ++ 
Sbjct: 189 VKR 191


>gi|325125945|gb|ADY85275.1| Ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 256

 Score =  261 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 89/198 (44%), Positives = 121/198 (61%), Gaps = 4/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E     K    V G+DEVGRG LAGPVV AA+IL  +     +NDSKK+S +KR  
Sbjct: 55  RFSYEKDFWAKG-QLVGGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLA 113

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY KI   A+ + +    ++ ID+ NI++A   A+  AVE L + P + L+D  ++P DL
Sbjct: 114 LYPKILQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSIRPDALLVDAMNVPVDL 173

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +IKGD+ S SIAAASI+AKV RD LM    + YPDY FD + GY T  H + ++
Sbjct: 174 P--QLELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALR 231

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + GP+ IHRLTF P+  +
Sbjct: 232 KYGPTPIHRLTFSPVSEM 249


>gi|119946583|ref|YP_944263.1| ribonuclease H [Psychromonas ingrahamii 37]
 gi|189043643|sp|A1SYU9|RNH2_PSYIN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|119865187|gb|ABM04664.1| RNase HII [Psychromonas ingrahamii 37]
          Length = 204

 Score =  261 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 83/186 (44%), Positives = 114/186 (61%), Gaps = 2/186 (1%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81
              +AG+DEVGRG L G VV A +ILD NN   G+ DSKK+S KK   L+++I   A+ +
Sbjct: 16  FTLIAGVDEVGRGPLVGDVVTACVILDANNPISGLADSKKLSEKKLALLFDEIQEKALFV 75

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           ++  AS   ID  NI  AT+ A+  AV+NL + P    IDG   P+ L     +V+KGD+
Sbjct: 76  AVGRASPVEIDALNILHATMLAMQRAVDNLSISPEFVFIDGNRCPQ-LSMPCESVVKGDA 134

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
               I+AASIIAKVTRDR M    K+YP YGF  H GYPT  H   I++ G +  +R +F
Sbjct: 135 RVAEISAASIIAKVTRDREMCELDKQYPHYGFAKHKGYPTKAHFAAIEKHGVTPEYRKSF 194

Query: 202 RPLRNL 207
           +P++ +
Sbjct: 195 KPVKKV 200


>gi|71903522|ref|YP_280325.1| ribonuclease HII [Streptococcus pyogenes MGAS6180]
 gi|97189348|sp|Q48TJ0|RNH2_STRPM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|71802617|gb|AAX71970.1| ribonuclease HII [Streptococcus pyogenes MGAS6180]
          Length = 238

 Score =  261 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 82/200 (41%), Positives = 122/200 (61%), Gaps = 6/200 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++    +AGIDEVGRG LAGPVV A +IL  +    G+NDSKKI   K E +
Sbjct: 34  LSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKSKHETI 93

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127
           Y+ +   A+ I I    +Q ID+ NI++AT  A+  A++ L+     P   LID  ++  
Sbjct: 94  YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTL-- 151

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           D+     +++KGD+ SLSIAAASI+AKVTRD++M    + +P YGF  + GY T +H Q 
Sbjct: 152 DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQG 211

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           +K  G + IHR +F P++++
Sbjct: 212 LKAYGITPIHRKSFEPVKSM 231


>gi|308173568|ref|YP_003920273.1| ribonuclease HII [Bacillus amyloliquefaciens DSM 7]
 gi|307606432|emb|CBI42803.1| ribonuclease HII [Bacillus amyloliquefaciens DSM 7]
 gi|328553499|gb|AEB23991.1| ribonuclease HII [Bacillus amyloliquefaciens TA208]
 gi|328911709|gb|AEB63305.1| ribonuclease HII [Bacillus amyloliquefaciens LL3]
          Length = 255

 Score =  261 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 86/195 (44%), Positives = 116/195 (59%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E +  +K    +AG+DE GRG LAGPVV  A+IL       G+ DSKK+S KK EE Y
Sbjct: 61  AYERLSYKKGFRLIAGVDEAGRGPLAGPVVAGAVILPAQCEILGLTDSKKLSEKKLEEYY 120

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +IT  A  I +       ID+ NI++A   A+  AV  L   P   L D  ++P D+P 
Sbjct: 121 TRITEEAAAIGVGIVHADVIDRINIYEAARLAMVKAVNALAETPDYLLADAMTLPLDIP- 179

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              +VIKGD+ S+SIAA + IAKVTRDRLM    K YP YGF+ + GY T +H + ++  
Sbjct: 180 -QSSVIKGDAKSVSIAAGACIAKVTRDRLMAEYAKTYPMYGFEKNKGYGTKEHLEALQAY 238

Query: 192 GPSCIHRLTFRPLRN 206
           GP+ IHR TF P+++
Sbjct: 239 GPTNIHRKTFAPVQS 253


>gi|70728572|ref|YP_258321.1| ribonuclease HII [Pseudomonas fluorescens Pf-5]
 gi|97189183|sp|Q4KHG2|RNH2_PSEF5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|68342871|gb|AAY90477.1| ribonuclease HII [Pseudomonas fluorescens Pf-5]
          Length = 217

 Score =  261 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 89/183 (48%), Positives = 117/183 (63%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE+L+++I   A+   I
Sbjct: 23  LVAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKLFDEICEKALSWCI 82

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI  AT+ A+  AVE L V P+ A+IDG   P+ L   A AV+KGDS  
Sbjct: 83  ARAEVEEIDELNILHATMLAMQRAVEGLSVTPKLAMIDGNRCPK-LAMPAEAVVKGDSKV 141

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P
Sbjct: 142 PAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 201

Query: 204 LRN 206
           +R 
Sbjct: 202 VRQ 204


>gi|170023329|ref|YP_001719834.1| ribonuclease HII [Yersinia pseudotuberculosis YPIII]
 gi|238688489|sp|B1JQH4|RNH2_YERPY RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|169749863|gb|ACA67381.1| Ribonuclease H [Yersinia pseudotuberculosis YPIII]
          Length = 198

 Score =  261 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 85/184 (46%), Positives = 115/184 (62%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDPN    G+ DSKK+S K+R  LY++IT  A+  S+
Sbjct: 12  LIAGVDEVGRGPLVGAVVTAAVILDPNRPIVGLADSKKLSEKRRLSLYDEITEKALSWSL 71

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID+ NI  A + A+  AV  L ++P   LIDG   P+ L   + AV+KGDS  
Sbjct: 72  GRAEPEEIDQLNILHAAMLAMQRAVSGLHIVPDYVLIDGNRCPK-LQMPSLAVVKGDSRV 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M      +P+YGF  H GYPTA H + +   G +  HR +F P
Sbjct: 131 AEISAASILAKVTRDREMTELDLLFPEYGFAQHKGYPTAFHLEKLAALGATVHHRRSFGP 190

Query: 204 LRNL 207
           ++ +
Sbjct: 191 VKRV 194


>gi|226952655|ref|ZP_03823119.1| ribonuclease HII [Acinetobacter sp. ATCC 27244]
 gi|226836592|gb|EEH68975.1| ribonuclease HII [Acinetobacter sp. ATCC 27244]
          Length = 200

 Score =  261 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 86/190 (45%), Positives = 119/190 (62%), Gaps = 1/190 (0%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77
           + E+    +AG+DE GRG L G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I  
Sbjct: 7   LVERCNMTIAGVDEAGRGPLVGSVVAAAVILDPNNPIEGLNDSKKLTEKKREKLFAEIQE 66

Query: 78  SAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136
            A+  SI+ ASH  ID+ NI +AT  A+  AVE L   P   ++DG  IP+ +     A+
Sbjct: 67  KALAWSIAEASHVEIDEFNILQATFLAMRRAVEALATQPAKVIVDGNQIPKGITIPCEAI 126

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           + GD+    I+AASI+AKVTRDR M+    +YP+YGF  H GYPT  H + I   G    
Sbjct: 127 VGGDASHAEISAASILAKVTRDRQMKALDLEYPNYGFAKHKGYPTKAHFEAIAIHGVIDE 186

Query: 197 HRLTFRPLRN 206
           HR ++ P++ 
Sbjct: 187 HRRSYGPVKK 196


>gi|306825207|ref|ZP_07458549.1| ribonuclease HII [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432643|gb|EFM35617.1| ribonuclease HII [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 259

 Score =  261 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 86/197 (43%), Positives = 122/197 (61%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++ +  +AG+DEVGRG LAGPVV AA+IL       G+NDSKKI  KK  E+
Sbjct: 58  LSYEKELYKQGLTLIAGVDEVGRGPLAGPVVAAAVILPKKCKIRGLNDSKKIPKKKHLEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ +   A+ I I    +  ID+ NI++AT  A+  A+  L   P   LID   +  +LP
Sbjct: 118 YQAVQDQALAIGIGIKDNHIIDQVNIYEATKLAMKEAISQLSPQPEHLLIDAMKL--ELP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               A+IKGD+ SLSIAAASI+AKVTRD +M+    +YP Y F ++ GY TAKH + +++
Sbjct: 176 ISQTAIIKGDANSLSIAAASIVAKVTRDNIMKDYDNQYPGYDFRANAGYGTAKHLEGLEK 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR +F P++ L
Sbjct: 236 LGVTQIHRTSFEPVKTL 252


>gi|116629569|ref|YP_814741.1| ribonuclease HII [Lactobacillus gasseri ATCC 33323]
 gi|311110787|ref|ZP_07712184.1| ribonuclease HII [Lactobacillus gasseri MV-22]
 gi|122273493|sp|Q043R9|RNH2_LACGA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|116095151|gb|ABJ60303.1| RNase HII [Lactobacillus gasseri ATCC 33323]
 gi|311065941|gb|EFQ46281.1| ribonuclease HII [Lactobacillus gasseri MV-22]
          Length = 250

 Score =  261 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 89/197 (45%), Positives = 128/197 (64%), Gaps = 4/197 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E    +K+   VAG+DEVGRG LAGPVV AA+IL  N     +NDSKK+S KKR+E
Sbjct: 54  RFSYEKKFWQKS-QLVAGVDEVGRGPLAGPVVTAAVILPHNFDLIDVNDSKKLSPKKRKE 112

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L+ KI + A+ +S+  A++  ID+ NI++A   A+ HAV+ L+V P + L+D  ++P ++
Sbjct: 113 LFPKILAKAVSVSVGLANNDVIDRINIYEADRLAMAHAVQGLKVKPDALLVDAMNVPLNI 172

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +I GD+ S SIAAASI+AKV RD LM    + YP+Y F  + GY T +H + +K
Sbjct: 173 P--QVKLIHGDAKSNSIAAASIVAKVFRDNLMDAYGEVYPEYDFKHNAGYGTREHMEALK 230

Query: 190 EKGPSCIHRLTFRPLRN 206
           + GP+ IHR +F P+  
Sbjct: 231 KYGPTPIHRRSFAPVSE 247


>gi|327460345|gb|EGF06682.1| ribonuclease HII [Streptococcus sanguinis SK1057]
          Length = 254

 Score =  261 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 84/197 (42%), Positives = 122/197 (61%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +     +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  KK +++
Sbjct: 58  LRYEKELYQAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQDI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ +   A+ + I     + ID+ NI++AT  A+  A+  L++     LID   +  D+P
Sbjct: 118 YQAVMDKALAVGIGLMDSEIIDQVNIYEATKLAMKEALSKLRLKSDYLLIDAMKLDVDIP 177

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD+LM    K++P Y F  + GY T  H Q +++
Sbjct: 178 --QESIIKGDANSLSIAAASIVAKVTRDKLMTDYDKEFPGYDFAQNAGYGTKSHLQGLEQ 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR TF P++++
Sbjct: 236 NGVTPIHRKTFEPVKSM 252


>gi|325694493|gb|EGD36402.1| ribonuclease HII [Streptococcus sanguinis SK150]
          Length = 254

 Score =  261 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 85/197 (43%), Positives = 122/197 (61%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +     +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  KK +E+
Sbjct: 58  LRYEKELYQAGYRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHDEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+++   A+ + +     + IDK NI++AT  A+  A+  L++ P   LID   +  D+ 
Sbjct: 118 YQEVMDKALAVGVGLMDSKIIDKVNIYQATKLAMKDALSRLKIEPDYLLIDAMKL--DVE 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD+LM    K++P Y F  + GY T  H Q ++ 
Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMADYDKEFPGYDFSQNAGYGTKSHLQGLER 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR TF P++++
Sbjct: 236 NGVTPIHRKTFEPVKSM 252


>gi|329667434|gb|AEB93382.1| ribonuclease HII [Lactobacillus johnsonii DPC 6026]
          Length = 250

 Score =  261 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 87/199 (43%), Positives = 127/199 (63%), Gaps = 4/199 (2%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F  E    +K+   VAG+DEVGRG LAGPVV AA+IL  +     +NDSKK+S KKR
Sbjct: 52  QSRFSYEKEFWQKD-QLVAGVDEVGRGPLAGPVVTAAVILPHDFDLIDVNDSKKLSPKKR 110

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           + L+ KI   A+ +S+  A++  ID+ NI++A   A+ HAV+ L+V P + L+D  ++P 
Sbjct: 111 QALFPKILEKAVSVSVGLANNDVIDQINIYEADRVAMAHAVQGLKVKPDALLVDAMNVPL 170

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           ++P     +I GD+ S SIAAASI+AKV RD LM    + YP+Y F  + GY T +H + 
Sbjct: 171 NIP--QVKLIHGDAKSNSIAAASIVAKVFRDNLMDAYGELYPEYDFKHNAGYGTREHMEA 228

Query: 188 IKEKGPSCIHRLTFRPLRN 206
           +K+ GP+ IHR +F P+  
Sbjct: 229 LKKYGPTPIHRRSFAPVSE 247


>gi|326794449|ref|YP_004312269.1| ribonuclease H [Marinomonas mediterranea MMB-1]
 gi|326545213|gb|ADZ90433.1| Ribonuclease H [Marinomonas mediterranea MMB-1]
          Length = 203

 Score =  261 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 97/183 (53%), Positives = 123/183 (67%), Gaps = 1/183 (0%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DE GRG LAG VV AA+ILDP+    G+NDSKK+S KKRE LY +I   A+  SI
Sbjct: 16  LVAGVDEAGRGPLAGDVVAAAVILDPDLTIDGLNDSKKLSEKKRERLYSQIIEKALSFSI 75

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + AS   ID+ NI  A++ A+  AV +L V    ALIDG  IP DL C A AV+KGD+  
Sbjct: 76  ARASVAEIDELNILHASMLAMTRAVNSLPVPAEHALIDGNRIPLDLKCPAEAVVKGDARH 135

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKVTRDR + +  +KYP+Y F+ H GYPTA H   IK+ G   IHR +F P
Sbjct: 136 QAIAAASILAKVTRDREIVLMAEKYPEYAFEKHKGYPTAVHLDAIKQHGVCEIHRTSFGP 195

Query: 204 LRN 206
           ++ 
Sbjct: 196 VKR 198


>gi|268319575|ref|YP_003293231.1| hypothetical protein FI9785_1100 [Lactobacillus johnsonii FI9785]
 gi|262397950|emb|CAX66964.1| rnhB [Lactobacillus johnsonii FI9785]
          Length = 250

 Score =  261 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 87/199 (43%), Positives = 127/199 (63%), Gaps = 4/199 (2%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F  E    +K+   VAG+DEVGRG LAGPVV AA+IL  +     +NDSKK+S KKR
Sbjct: 52  QSRFSYEKEFWQKD-QLVAGVDEVGRGPLAGPVVTAAVILPHDFDLIDVNDSKKLSPKKR 110

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           + L+ KI   A+ +S+  A++  ID+ NI++A   A+ HAV+ L+V P + L+D  ++P 
Sbjct: 111 QALFPKILEKAVSVSVGLANNDLIDQINIYEADRVAMAHAVQGLKVKPDALLVDAMNVPL 170

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           ++P     +I GD+ S SIAAASI+AKV RD LM    + YP+Y F  + GY T +H + 
Sbjct: 171 NIP--QVKLIHGDAKSNSIAAASIVAKVFRDNLMDAYGELYPEYDFKHNAGYGTREHMEA 228

Query: 188 IKEKGPSCIHRLTFRPLRN 206
           +K+ GP+ IHR +F P+  
Sbjct: 229 LKKYGPTPIHRRSFAPVSE 247


>gi|104774162|ref|YP_619142.1| ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|123077255|sp|Q1G9U8|RNH2_LACDA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|103423243|emb|CAI98076.1| Ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
          Length = 256

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 89/198 (44%), Positives = 120/198 (60%), Gaps = 4/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E     K    V G+DEVGRG LAGPVV AA+IL  +     +NDSKK+S +KR  
Sbjct: 55  RFSYEKDFWAKG-QLVGGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLA 113

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY KI   A+ + +    ++ ID+ NI++A   A+  AVE L   P + L+D  ++P DL
Sbjct: 114 LYPKILQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSTRPDALLVDAMNVPVDL 173

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +IKGD+ S SIAAASI+AKV RD LM    + YPDY FD + GY T  H + ++
Sbjct: 174 P--QLELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALR 231

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + GP+ IHRLTF P+  +
Sbjct: 232 KYGPTPIHRLTFSPVSEM 249


>gi|56698275|ref|YP_168648.1| ribonuclease HII [Ruegeria pomeroyi DSS-3]
 gi|81348925|sp|Q5LMW0|RNH2_SILPO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|56680012|gb|AAV96678.1| ribonuclease HII [Ruegeria pomeroyi DSS-3]
          Length = 234

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 92/199 (46%), Positives = 132/199 (66%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +P ++LEA +  +    +AG+DEVGRG LAGPVV AA++LDP  IP G+NDSKK++  +R
Sbjct: 32  QPDYQLEAALAAQGHIRIAGVDEVGRGPLAGPVVAAAVVLDPGAIPEGLNDSKKLTAARR 91

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           E LY+ + ++A +SI+ AS + ID  NI +A+  A+  AV  L   P   LIDG  IP  
Sbjct: 92  ERLYDILHANAQVSIAEASVEEIDALNILRASHLAMERAVAALNPAPDFLLIDGNLIPAG 151

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L C A AVIKGD  S+SIAAASI+AK  RDRLM    +++P YG++ + GYPT +H+  +
Sbjct: 152 LSCPAEAVIKGDGRSVSIAAASIVAKTWRDRLMVDLAQQHPGYGWERNAGYPTKEHRSAL 211

Query: 189 KEKGPSCIHRLTFRPLRNL 207
           +  G +  HR +F+ +  +
Sbjct: 212 QNLGVTPHHRRSFKTVHKI 230


>gi|317493174|ref|ZP_07951597.1| ribonuclease HII [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918834|gb|EFV40170.1| ribonuclease HII [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 207

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 87/185 (47%), Positives = 116/185 (62%), Gaps = 2/185 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LYE+I   A+  S
Sbjct: 21  QFIAGVDEVGRGPLVGAVVTAAVILDPARPIIGLADSKKLSEKRRNALYEEIVEKALSWS 80

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A    ID+ NI  AT+ A+  AV  L V P   LIDG   P+ LP  + AV+KGDS 
Sbjct: 81  LGRAEPHEIDELNILHATMLAMQRAVAGLSVEPDYVLIDGNRCPK-LPMASQAVVKGDSR 139

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRDR M +   ++P+YGF  H GYPTA H + + + G +  HR +F 
Sbjct: 140 VAEISAASILAKVTRDREMEVLDAQFPEYGFAQHKGYPTAFHLERLAQLGATVHHRRSFG 199

Query: 203 PLRNL 207
           P++ +
Sbjct: 200 PVKRV 204


>gi|255348391|ref|ZP_05380398.1| ribonuclease HII [Chlamydia trachomatis 70]
 gi|255502932|ref|ZP_05381322.1| ribonuclease HII [Chlamydia trachomatis 70s]
          Length = 217

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 88/195 (45%), Positives = 117/195 (60%), Gaps = 4/195 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E    E+    VAGIDE GRG LAGPVV  A IL    +  GI+DSKK++ K+R  LYE
Sbjct: 17  FENQAIEQGYSQVAGIDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQRRYLYE 76

Query: 74  KITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +         +   S + ID+ NI +AT +A+  A+ +L+  P   L+DG  +P  +P 
Sbjct: 77  LLLEDPEVDCGVGVVSVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLFLPHKIP- 135

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
            +  +IKGD+ S+SIAAASIIAK  RD LMR  H +YP+YGFD H GY TA H Q +K  
Sbjct: 136 -SLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHLQALKHF 194

Query: 192 GPSCIHRLTFRPLRN 206
           GP   HR +F P++ 
Sbjct: 195 GPCVHHRKSFSPVKE 209


>gi|15834918|ref|NP_296677.1| ribonuclease HII [Chlamydia muridarum Nigg]
 gi|270285088|ref|ZP_06194482.1| ribonuclease HII [Chlamydia muridarum Nigg]
 gi|270289111|ref|ZP_06195413.1| ribonuclease HII [Chlamydia muridarum Weiss]
 gi|301336484|ref|ZP_07224686.1| ribonuclease HII [Chlamydia muridarum MopnTet14]
 gi|11387107|sp|Q9PL10|RNH2_CHLMU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|8163191|gb|AAF73545.1| ribonuclease HII [Chlamydia muridarum Nigg]
          Length = 217

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 87/195 (44%), Positives = 118/195 (60%), Gaps = 4/195 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E    ++    +AG+DE GRG LAGPVV  A IL    +  GI+DSKK+S K+R  LYE
Sbjct: 17  FEDQAIKQGYSRIAGVDEAGRGPLAGPVVAGACILPGGKLFLGIDDSKKLSPKQRRYLYE 76

Query: 74  KITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +         +   S + ID+ NI +AT +A+  A+ +L+  P   L+DG  +P ++PC
Sbjct: 77  LLLEDPEVTCGVGVVSVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLFLPHEIPC 136

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +IKGDS S+SIAAASIIAK  RD LMR  H +YP+YGFD H GY T  H Q +K+ 
Sbjct: 137 --LKIIKGDSRSVSIAAASIIAKEYRDELMRKLHSEYPEYGFDKHKGYGTVAHLQALKQF 194

Query: 192 GPSCIHRLTFRPLRN 206
           GP   HR +F P++ 
Sbjct: 195 GPCVYHRKSFSPVKE 209


>gi|328946298|gb|EGG40442.1| ribonuclease HII [Streptococcus sanguinis SK1087]
          Length = 254

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 84/197 (42%), Positives = 122/197 (61%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +     +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  KK +++
Sbjct: 58  LRYEKELYQAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKINGLNDSKKIPKKKHQDI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ +   A+ + I   + + ID+ NI++AT  A+  A+  L++     LID   +  D+P
Sbjct: 118 YQAVMDKALAVGIGLMNSEIIDQVNIYEATKLAMKEALSKLRLKSDYLLIDAMKLDVDIP 177

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD+LM    K++P Y F  + GY T  H Q ++ 
Sbjct: 178 --QESIIKGDANSLSIAAASIVAKVTRDKLMTDYDKEFPGYDFAQNAGYGTKSHLQGLER 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR TF P++++
Sbjct: 236 HGVTPIHRKTFEPVKSM 252


>gi|261379547|ref|ZP_05984120.1| ribonuclease HII [Neisseria subflava NJ9703]
 gi|284798018|gb|EFC53365.1| ribonuclease HII [Neisseria subflava NJ9703]
          Length = 208

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 83/182 (45%), Positives = 108/182 (59%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG L G V  AA+IL  +    G+ DSKK+S KKR+ L + I   A+  SI+ 
Sbjct: 18  AGVDEAGRGPLVGSVFAAAVILPEHFDLPGLTDSKKLSEKKRDMLAQMIKEQAVAWSIAF 77

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A    I + NI  AT+ A+  AVE L V P    IDG  +P+DL   A AV+KGDS  + 
Sbjct: 78  ADPDEILQLNILHATMAAMKRAVEGLSVTPDKVWIDGNRVPKDLNVPAEAVVKGDSKIIE 137

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AAS++AK  RD  M    K+YP YGFD H GY TA+H   +K+ G    HR  F P++
Sbjct: 138 ISAASVLAKTARDAEMYELAKRYPQYGFDRHKGYGTAQHLAALKQYGVLPEHRRNFAPVK 197

Query: 206 NL 207
            L
Sbjct: 198 TL 199


>gi|300724780|ref|YP_003714105.1| RNAse HII [Xenorhabdus nematophila ATCC 19061]
 gi|297631322|emb|CBJ92017.1| RNAse HII [Xenorhabdus nematophila ATCC 19061]
          Length = 196

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 85/183 (46%), Positives = 114/183 (62%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP     G+ DSKK++ K+RE LY +I   A+  S+
Sbjct: 10  LIAGVDEVGRGPLVGDVVTAAVILDPAKPITGLMDSKKLTEKRREALYLEIKEKALCWSL 69

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID+ NI  AT+ A+  AV  L ++P   LIDG   P  L   + AV+KGDS+ 
Sbjct: 70  GRAEPEEIDQLNILHATMLAMQRAVAGLVIVPDYVLIDGNRCPA-LAMPSQAVVKGDSLV 128

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M     ++PDYGF  H GYPTA H + +   G +  HR +F P
Sbjct: 129 AEISAASILAKVTRDREMAELDNQFPDYGFAKHKGYPTALHLEKLALHGATAHHRKSFAP 188

Query: 204 LRN 206
           ++ 
Sbjct: 189 VKR 191


>gi|49473986|ref|YP_032028.1| ribonuclease HII [Bartonella quintana str. Toulouse]
 gi|81647195|sp|Q6G0E6|RNH2_BARQU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|49239489|emb|CAF25842.1| Ribonuclease HII [Bartonella quintana str. Toulouse]
          Length = 223

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 102/203 (50%), Positives = 144/203 (70%), Gaps = 2/203 (0%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           ++P +P+F  E  ++++  + +AG+DEVGRG LAGPVV AA+ILD +++P G+NDSKK+S
Sbjct: 13  NLPLKPNFSCELDLQKQGFFHIAGVDEVGRGPLAGPVVTAAVILDKDHVPDGLNDSKKLS 72

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            ++R ELY +I  SA+ +SI+S   + ID+ +I KATL+A+   V  L +    ALIDGR
Sbjct: 73  AQRRNELYCEILQSALAVSIASLCARTIDQSDIRKATLEAMRRCVTGLAIPAHYALIDGR 132

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            IP  LPC A A+IKGD  S+SIAAASIIAKVTRDR+M+ A + Y +YG + HVGY T  
Sbjct: 133 DIPFQLPCPATALIKGDQHSVSIAAASIIAKVTRDRMMKCAGQIYKNYGLEKHVGYATLA 192

Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205
           H+  + + GP   +HR +F PL+
Sbjct: 193 HRIALDKYGPVVGLHRYSFAPLK 215


>gi|282852052|ref|ZP_06261410.1| ribonuclease HII [Lactobacillus gasseri 224-1]
 gi|282556812|gb|EFB62416.1| ribonuclease HII [Lactobacillus gasseri 224-1]
          Length = 250

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 88/197 (44%), Positives = 127/197 (64%), Gaps = 4/197 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E    +K+   VAG+DEVGRG LAGPVV AA+IL  N     +NDSKK+S KKR+E
Sbjct: 54  RFSYEKKFWQKS-QLVAGVDEVGRGPLAGPVVTAAVILPHNFDLIDVNDSKKLSPKKRKE 112

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L+ KI + A+ + +  A++  ID+ NI++A   A+ HAV+ L+V P + L+D  ++P ++
Sbjct: 113 LFPKILAKAVSVGVGLANNDVIDRINIYEADRLAMAHAVQGLKVKPDALLVDAMNVPLNI 172

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +I GD+ S SIAAASI+AKV RD LM    + YP+Y F  + GY T +H + +K
Sbjct: 173 P--QVKLIHGDAKSNSIAAASIVAKVFRDNLMDAYGEVYPEYDFKHNAGYGTREHMEALK 230

Query: 190 EKGPSCIHRLTFRPLRN 206
           + GP+ IHR +F P+  
Sbjct: 231 KYGPTPIHRRSFAPVSE 247


>gi|332289941|ref|YP_004420793.1| ribonuclease HII [Gallibacterium anatis UMN179]
 gi|330432837|gb|AEC17896.1| ribonuclease HII [Gallibacterium anatis UMN179]
          Length = 197

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 89/186 (47%), Positives = 118/186 (63%), Gaps = 1/186 (0%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
           N   +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S KKR+ L E+I   A+ 
Sbjct: 8   NAKLIAGVDEVGRGPLVGAVVTAAVILDPERPITGLADSKKLSEKKRQLLAEEIKEKALA 67

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            S+  A    ID+ NI +AT+ A+  AV+ L + P   LIDG  IP  L   A AV+KGD
Sbjct: 68  WSLGRAEAAEIDRINILQATMLAMCRAVQGLHIQPDFVLIDGNRIPSALKIAAQAVVKGD 127

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S+   I+AASI+AKV RD+ M + H+KYP YGFD H GYPT  H + +++ G    HR +
Sbjct: 128 SLVAEISAASILAKVARDQEMLLLHQKYPQYGFDRHKGYPTKLHLEALEKYGILAEHRQS 187

Query: 201 FRPLRN 206
           F P++ 
Sbjct: 188 FAPVKK 193


>gi|227879127|ref|ZP_03997011.1| ribonuclease HII [Lactobacillus crispatus JV-V01]
 gi|256843160|ref|ZP_05548648.1| ribonuclease HII [Lactobacillus crispatus 125-2-CHN]
 gi|256850241|ref|ZP_05555670.1| ribonuclease HII [Lactobacillus crispatus MV-1A-US]
 gi|262046367|ref|ZP_06019329.1| ribonuclease HII [Lactobacillus crispatus MV-3A-US]
 gi|293380236|ref|ZP_06626317.1| ribonuclease HII [Lactobacillus crispatus 214-1]
 gi|312977295|ref|ZP_07789043.1| ribonuclease HII [Lactobacillus crispatus CTV-05]
 gi|227861284|gb|EEJ68919.1| ribonuclease HII [Lactobacillus crispatus JV-V01]
 gi|256614580|gb|EEU19781.1| ribonuclease HII [Lactobacillus crispatus 125-2-CHN]
 gi|256712878|gb|EEU27870.1| ribonuclease HII [Lactobacillus crispatus MV-1A-US]
 gi|260573238|gb|EEX29796.1| ribonuclease HII [Lactobacillus crispatus MV-3A-US]
 gi|290923203|gb|EFE00125.1| ribonuclease HII [Lactobacillus crispatus 214-1]
 gi|310895726|gb|EFQ44792.1| ribonuclease HII [Lactobacillus crispatus CTV-05]
          Length = 250

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 90/198 (45%), Positives = 124/198 (62%), Gaps = 4/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E    EK    VAG+DEVGRG LAGPVV AA+I+D +     +NDSKK+S +KR +
Sbjct: 54  RFSYEKKFWEKG-QLVAGVDEVGRGPLAGPVVTAAVIIDQDFDLLDVNDSKKLSPEKRLK 112

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY KI + A+ + I   S + ID+ NI++A   A+  AV  L V P + L+D  ++P +L
Sbjct: 113 LYPKILAEAVSVGIGVKSAEVIDQINIYEADRQAMAQAVRALDVKPNALLVDAMNVPVNL 172

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +IKGD+ S SIAAASI+AKV RD+LM    + YP Y F  + GY T +H + +K
Sbjct: 173 P--QVKLIKGDAKSNSIAAASIVAKVFRDQLMDDYDRIYPQYCFHHNAGYGTKEHIEALK 230

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + GP+ IHR TF P+ + 
Sbjct: 231 KYGPTPIHRKTFAPVSDF 248


>gi|254492019|ref|ZP_05105197.1| ribonuclease HII [Methylophaga thiooxidans DMS010]
 gi|224462834|gb|EEF79105.1| ribonuclease HII [Methylophaga thiooxydans DMS010]
          Length = 190

 Score =  261 bits (668), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 90/182 (49%), Positives = 117/182 (64%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG LAGPVV AA+ILDP+N   G+ DSKK+S K+RE L   I   A+  ++
Sbjct: 6   LVAGVDEVGRGPLAGPVVTAAVILDPDNPIEGLADSKKLSEKRREFLVPLIKEHALAWAM 65

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID+ NI +A+L A+  AVE L + P   L+DG   P DL C+   VIKGD   
Sbjct: 66  GRAEPEEIDQINILQASLLAMKRAVEALSITPGHVLVDGIHAP-DLNCKTTTVIKGDQKE 124

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV RDR M      YP YGF  H GYPT +HQ+ + + G + IHR +F P
Sbjct: 125 PAIAAASILAKVARDREMHEMDLMYPGYGFAQHKGYPTKQHQKALADLGVTDIHRRSFSP 184

Query: 204 LR 205
           ++
Sbjct: 185 VQ 186


>gi|170768530|ref|ZP_02902983.1| ribonuclease HII [Escherichia albertii TW07627]
 gi|170122634|gb|EDS91565.1| ribonuclease HII [Escherichia albertii TW07627]
          Length = 198

 Score =  261 bits (668), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 89/183 (48%), Positives = 112/183 (61%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  LYE+I   A+  S+
Sbjct: 11  LVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEEIKEKALSWSL 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  + AV+KGDS  
Sbjct: 71  GRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPVPSMAVVKGDSRV 129

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRD  M      YP YGF  H GYPTA H + + E G +  HR +F P
Sbjct: 130 PEISAASILAKVTRDAEMAALDTVYPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGP 189

Query: 204 LRN 206
           ++ 
Sbjct: 190 VKR 192


>gi|327183486|gb|AEA31933.1| ribonuclease HII [Lactobacillus amylovorus GRL 1118]
          Length = 252

 Score =  261 bits (668), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 90/198 (45%), Positives = 123/198 (62%), Gaps = 4/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E     KN   VAG+DEVGRG LAGPVV AA+I+D +     +NDSKK++ ++R  
Sbjct: 54  RFAYEKEFWAKN-QLVAGVDEVGRGPLAGPVVTAAVIIDHDFDLIDVNDSKKLTPERRLA 112

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY KI   A+ + I   S Q ID+ NI++A   A+  AV  L + P + ++D  ++P DL
Sbjct: 113 LYPKILEEAVSVGIGVKSSQVIDQINIYEADRQAMAQAVRALDIKPDALVVDAMNVPVDL 172

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +IKGD+ S SIAAASI+AKV RD+LM    K YP YGF ++ GY T +H   +K
Sbjct: 173 P--QVKLIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFQNNAGYGTKEHIAALK 230

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + GP+ IHR TF P+ + 
Sbjct: 231 KYGPTAIHRKTFAPVSDF 248


>gi|315038209|ref|YP_004031777.1| ribonuclease HII [Lactobacillus amylovorus GRL 1112]
 gi|325956663|ref|YP_004292075.1| ribonuclease HII [Lactobacillus acidophilus 30SC]
 gi|312276342|gb|ADQ58982.1| ribonuclease HII [Lactobacillus amylovorus GRL 1112]
 gi|325333228|gb|ADZ07136.1| ribonuclease HII [Lactobacillus acidophilus 30SC]
          Length = 252

 Score =  261 bits (668), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 90/198 (45%), Positives = 123/198 (62%), Gaps = 4/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E     KN   VAG+DEVGRG LAGPVV AA+I+D +     +NDSKK++ ++R  
Sbjct: 54  RFAYEKEFWAKN-QLVAGVDEVGRGPLAGPVVTAAVIIDHDFDLIDVNDSKKLTPERRLA 112

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY KI   A+ + I   S Q ID+ NI++A   A+  AV  L + P + ++D  ++P DL
Sbjct: 113 LYPKILEEAVSVGIGVKSSQVIDQINIYEADRQAMAQAVRALDIKPDALVVDAMNVPVDL 172

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +IKGD+ S SIAAASI+AKV RD+LM    K YP YGF ++ GY T +H   +K
Sbjct: 173 P--QVKLIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFQNNAGYGTKEHIAALK 230

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + GP+ IHR TF P+ + 
Sbjct: 231 KYGPTAIHRKTFAPVSDF 248


>gi|288905300|ref|YP_003430522.1| ribonuclease HII [Streptococcus gallolyticus UCN34]
 gi|306831379|ref|ZP_07464538.1| ribonuclease HII [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325978285|ref|YP_004288001.1| ribonuclease HII [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|288732026|emb|CBI13591.1| ribonuclease HII [Streptococcus gallolyticus UCN34]
 gi|304426439|gb|EFM29552.1| ribonuclease HII [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325178213|emb|CBZ48257.1| rnhB [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 259

 Score =  261 bits (668), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 85/200 (42%), Positives = 121/200 (60%), Gaps = 6/200 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++    +AGIDEVGRG LAGPVV A +IL  N     +NDSKKI     EE+
Sbjct: 58  LRYEKELYQQGYQAIAGIDEVGRGPLAGPVVTACVILPKNCKIKHLNDSKKIPKNHHEEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127
           Y++I + A+ I I    +  ID+ NI++AT   +  A+  L+     P   LID   +  
Sbjct: 118 YQEILARALGIGIGIVDNNVIDQINIYEATKVGMLQAINQLKGVVTKPDYLLIDAMHLET 177

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +P Q+  +IKGD+ SLSIAAASI+AKVTRDR+M      YP Y F+ +VGY T +H + 
Sbjct: 178 SIPQQS--LIKGDANSLSIAAASIVAKVTRDRMMADYANDYPGYAFEKNVGYGTKEHLEG 235

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           +K+ G + IHR TF P++++
Sbjct: 236 LKKYGITPIHRKTFEPIKSM 255


>gi|318606916|emb|CBY28414.1| ribonuclease HII [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 198

 Score =  261 bits (667), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 85/184 (46%), Positives = 114/184 (61%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++IT  A+  S+
Sbjct: 12  LIAGVDEVGRGPLVGAVVTAAVILDPKQPIVGLADSKKLSEKRRLSLYDEITDKALSWSL 71

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID+ NI  AT+ A+  AV  L + P   LIDG   P+ L   + AV+KGDS  
Sbjct: 72  GRAEPEEIDQLNILHATMLAMQRAVAGLHIAPDYVLIDGNRCPK-LAMPSLAVVKGDSRV 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M     ++P+YGF  H GYPTA H   +   G +  HR +F P
Sbjct: 131 AEISAASILAKVTRDREMTELDLQFPEYGFAQHKGYPTAVHLDKLTTFGATEHHRRSFGP 190

Query: 204 LRNL 207
           ++ +
Sbjct: 191 VKRV 194


>gi|259503396|ref|ZP_05746298.1| ribonuclease HII [Lactobacillus antri DSM 16041]
 gi|259168641|gb|EEW53136.1| ribonuclease HII [Lactobacillus antri DSM 16041]
          Length = 255

 Score =  261 bits (667), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 84/197 (42%), Positives = 116/197 (58%), Gaps = 3/197 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           R  F  E  + +     VAG+DEVGRG LAGPVV  A+IL P+    G+ DSK+++  +R
Sbjct: 57  RQRFHYERQLWQNGCRYVAGMDEVGRGPLAGPVVTCAVILGPDFDLIGVTDSKQLTRHER 116

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E+LY +I   A+ +SI+    + ID+ NI+ AT DA+  AV NL   P   ++D   +P 
Sbjct: 117 EQLYLRIVDEAVEVSIAVNDREAIDRLNIYAATQDAMMRAVRNLNHRPDHLIVDAVPLPF 176

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           D P     +IKGD  S+S+AAASI+AK  RD LMR   + YP YGF  ++GY T  H   
Sbjct: 177 DYP--QTTLIKGDQKSISVAAASIVAKEYRDHLMRDYDRVYPGYGFAENMGYGTKAHLAG 234

Query: 188 IKEKGPSCIHRLTFRPL 204
           +   G   IHR +F P+
Sbjct: 235 LARLGACPIHRRSFSPV 251


>gi|146308060|ref|YP_001188525.1| ribonuclease HII [Pseudomonas mendocina ymp]
 gi|166226640|sp|A4XWS7|RNH2_PSEMY RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|145576261|gb|ABP85793.1| Ribonuclease H [Pseudomonas mendocina ymp]
          Length = 208

 Score =  261 bits (667), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 89/184 (48%), Positives = 117/184 (63%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE L+++I   A+   I
Sbjct: 13  LVAGVDEVGRGPLCGAVVTAAVILDPLRPIIGLNDSKKLTEARREVLFDEIREKALAWCI 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI  AT+ A+  AVE L V P+ ALIDG   P  L   +  V+KGDS  
Sbjct: 73  ARAEVEEIDRLNILHATMLAMQRAVEGLSVTPKLALIDGNRCPR-LTVPSAPVVKGDSRV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV+RDR M    + YP YG   H GYPT  H + ++  GP+ IHR +F P
Sbjct: 132 PAIAAASILAKVSRDREMLEMDRLYPGYGIAGHKGYPTPVHLEALQRLGPTPIHRRSFAP 191

Query: 204 LRNL 207
           +R L
Sbjct: 192 VRAL 195


>gi|291550686|emb|CBL26948.1| Ribonuclease HII [Ruminococcus torques L2-14]
          Length = 252

 Score =  261 bits (667), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 91/197 (46%), Positives = 120/197 (60%), Gaps = 4/197 (2%)

Query: 8   ERPHFELEAMVREK--NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           ER   E+      K  +   + GIDE GRG LAGPVV  A+IL  +     +NDSKK+S 
Sbjct: 52  ERERLEVMKTFERKYADYSFICGIDEAGRGPLAGPVVAGAVILPKDCEILYLNDSKKLSA 111

Query: 66  KKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
            KREELY++I   A+ + +  AS   ID+ NI +AT +A+  A+  L V P   L D  +
Sbjct: 112 AKREELYDEIMEKAVAAAVGMASPARIDEINILQATYEAMREAISKLAVEPGILLNDAVT 171

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           IPE +      +IKGD+ S+SIAAASI+AKVTRDRLM    K  P+YGF  H GY + +H
Sbjct: 172 IPEMI-IPQVPIIKGDAKSVSIAAASILAKVTRDRLMVEYDKVMPEYGFAGHKGYGSKEH 230

Query: 185 QQVIKEKGPSCIHRLTF 201
            + IK+ GP+ IHR TF
Sbjct: 231 IEAIKKYGPTPIHRKTF 247


>gi|146310385|ref|YP_001175459.1| ribonuclease HII [Enterobacter sp. 638]
 gi|166991067|sp|A4W6S8|RNH2_ENT38 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|145317261|gb|ABP59408.1| Ribonuclease H [Enterobacter sp. 638]
          Length = 198

 Score =  261 bits (667), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 89/183 (48%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L+++I   A+  S+
Sbjct: 11  LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALFDEIKEKALAWSL 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID+ NI  AT+ A+  AV  L+++P   LIDG   P  LP ++ AV+KGDS  
Sbjct: 71  GRAEPEEIDELNILHATMLAMQRAVAGLKIVPEYVLIDGNRCPA-LPMRSLAVVKGDSRV 129

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASIIAKVTRD  M      YP YGF  H GYPTA H + + E GP+  HR +F P
Sbjct: 130 AEISAASIIAKVTRDAEMAALDLSYPQYGFAQHKGYPTAFHLEKLSEHGPTEHHRRSFGP 189

Query: 204 LRN 206
           ++ 
Sbjct: 190 VKR 192


>gi|270290222|ref|ZP_06196447.1| ribonuclease HII [Pediococcus acidilactici 7_4]
 gi|270281003|gb|EFA26836.1| ribonuclease HII [Pediococcus acidilactici 7_4]
          Length = 255

 Score =  261 bits (667), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 94/197 (47%), Positives = 125/197 (63%), Gaps = 3/197 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F LE  + +     VAGIDEVGRG LAGPVV AA++LD +     +NDSK++S K R
Sbjct: 55  QKRFSLENELWQSGKQFVAGIDEVGRGCLAGPVVTAAVVLDSHFDLVEVNDSKQLSLKLR 114

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E LY +I S A+ + I   S+Q ID+  I  AT  A+  A+ +L V P   LID   +P 
Sbjct: 115 ESLYAQILSEAVSVGIGVRSNQQIDQMGILNATKAAMNDAISHLNVTPEHLLIDAVQVPT 174

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +P     + KGD+ S+SIAAASI+AKV RD LMR  +K YP YGFD +VGY T +H + 
Sbjct: 175 SIPKTV--MYKGDAKSISIAAASIVAKVYRDHLMRSYNKIYPGYGFDQNVGYGTKQHLEG 232

Query: 188 IKEKGPSCIHRLTFRPL 204
           +KE G + +HRLTF P+
Sbjct: 233 LKELGITPLHRLTFEPV 249


>gi|116514255|ref|YP_813161.1| ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|122275013|sp|Q049Z9|RNH2_LACDB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|116093570|gb|ABJ58723.1| RNase HII [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 256

 Score =  261 bits (667), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 89/198 (44%), Positives = 119/198 (60%), Gaps = 4/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E     K    V G+DEVGRG LAGPVV AA+IL  +     +NDSKK+S +KR  
Sbjct: 55  RFSYEKDFWAKG-QLVGGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLA 113

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY KI   A+ + +    ++ ID+ NI++A   A+  AVE L   P   L+D  ++P DL
Sbjct: 114 LYPKILQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSTRPDVLLVDAMNVPVDL 173

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +IKGD+ S SIAAASI+AKV RD LM    + YPDY FD + GY T  H + ++
Sbjct: 174 P--QLELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALR 231

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + GP+ IHRLTF P+  +
Sbjct: 232 KYGPTPIHRLTFSPVSEM 249


>gi|330504230|ref|YP_004381099.1| ribonuclease HII [Pseudomonas mendocina NK-01]
 gi|328918516|gb|AEB59347.1| ribonuclease HII [Pseudomonas mendocina NK-01]
          Length = 208

 Score =  261 bits (667), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 90/184 (48%), Positives = 118/184 (64%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE L+++I   A+   I
Sbjct: 13  LVAGVDEVGRGPLCGAVVTAAVILDPARPIIGLNDSKKLTEARRELLFDEIREKALAWCI 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI  AT+ A+  AVE L V PR ALIDG   P+ L   +  V+KGDS  
Sbjct: 73  ARAEVEEIDRLNILHATMLAMQRAVEGLSVTPRLALIDGNRCPK-LAVPSAPVVKGDSRV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV+RDR M    + YP YG   H GYPT  H + ++  GP+ IHR +F P
Sbjct: 132 PAIAAASILAKVSRDREMVEMDRLYPGYGIAGHKGYPTPVHLEALQRLGPTPIHRRSFAP 191

Query: 204 LRNL 207
           +R L
Sbjct: 192 VRAL 195


>gi|332976611|gb|EGK13452.1| ribonuclease HII [Desmospora sp. 8437]
          Length = 264

 Score =  261 bits (667), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 88/196 (44%), Positives = 120/196 (61%), Gaps = 2/196 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           + LE   R +    +AG+DE GRG LAGPVV AA+IL       G+NDSKK+S ++RE L
Sbjct: 61  WRLEREYRRQGYQAIAGVDEAGRGPLAGPVVAAAVILPLGFDATGLNDSKKLSPEERESL 120

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
             +I   A+ + I  A H+YID+HNI +AT +A+  AV +L       L+D   +PE L 
Sbjct: 121 RVRIERDAVAVGIGVADHRYIDEHNILQATYEAMRRAVADLSPAADCLLLDAVEVPE-LF 179

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                ++KGD++S SIAAAS+IAK  RDR M  A KKYP YGF+ ++GY T  H   ++ 
Sbjct: 180 LPQHPIVKGDALSHSIAAASVIAKTFRDRCMTAAGKKYPQYGFEKNMGYGTPDHLAALER 239

Query: 191 KGPSCIHRLTFRPLRN 206
            G   IHR +F P+R 
Sbjct: 240 WGTCPIHRKSFAPVRE 255


>gi|76788741|ref|YP_327827.1| ribonuclease HII [Chlamydia trachomatis A/HAR-13]
 gi|237804378|ref|YP_002888532.1| ribonuclease HII [Chlamydia trachomatis B/TZ1A828/OT]
 gi|97182374|sp|Q3KMZ3|RNH2_CHLTA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|76167271|gb|AAX50279.1| ribonuclease HII [Chlamydia trachomatis A/HAR-13]
 gi|231272678|emb|CAX09581.1| ribonuclease HII [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 217

 Score =  261 bits (667), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 88/195 (45%), Positives = 117/195 (60%), Gaps = 4/195 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E    E+    VAG+DE GRG LAGPVV  A IL    +  GI+DSKK++ K+R  LYE
Sbjct: 17  FENQAIEQGYSRVAGVDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQRRYLYE 76

Query: 74  KITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +         +   S + ID+ NI +AT +A+  A+ +LQ  P   L+DG  +P  +P 
Sbjct: 77  LLLEDPEVDCGVGVVSVERIDEINILEATKEAMVQAIASLQSTPDFLLVDGLFLPHKVP- 135

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
            +  +IKGD+ S+SIAAASIIAK  RD LMR  H +YP+YGFD H GY TA H Q +K  
Sbjct: 136 -SLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHLQALKHF 194

Query: 192 GPSCIHRLTFRPLRN 206
           GP   HR +F P++ 
Sbjct: 195 GPCVYHRKSFSPVKE 209


>gi|166154250|ref|YP_001654368.1| ribonuclease HII [Chlamydia trachomatis 434/Bu]
 gi|166155125|ref|YP_001653380.1| ribonuclease HII [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335499|ref|ZP_07223743.1| ribonuclease HII [Chlamydia trachomatis L2tet1]
 gi|238687401|sp|B0B9D6|RNH2_CHLT2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238687453|sp|B0BB15|RNH2_CHLTB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|165930238|emb|CAP03723.1| ribonuclease HII [Chlamydia trachomatis 434/Bu]
 gi|165931113|emb|CAP06677.1| ribonuclease HII [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 217

 Score =  261 bits (667), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 87/195 (44%), Positives = 117/195 (60%), Gaps = 4/195 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E    E+    VAG+DE GRG LAGPVV  A IL    +  GI+DSKK++ K+R  LYE
Sbjct: 17  FENQAIEQGYSQVAGVDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQRRYLYE 76

Query: 74  KITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +         +   S + ID+ NI +AT +A+  A+ +L+  P   L+DG  +P  +P 
Sbjct: 77  LLLEDPEVDCGVGVISVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLFLPHKIP- 135

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
            +  +IKGD+ S+SIAAASIIAK  RD LMR  H +YP+YGFD H GY TA H Q +K  
Sbjct: 136 -SLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHLQALKHF 194

Query: 192 GPSCIHRLTFRPLRN 206
           GP   HR +F P++ 
Sbjct: 195 GPCVYHRKSFSPVKE 209


>gi|66044605|ref|YP_234446.1| ribonuclease HII [Pseudomonas syringae pv. syringae B728a]
 gi|75502991|sp|Q4ZWR4|RNH2_PSEU2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|63255312|gb|AAY36408.1| Ribonuclease H [Pseudomonas syringae pv. syringae B728a]
 gi|330968946|gb|EGH69012.1| ribonuclease HII [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 218

 Score =  261 bits (667), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 89/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE+LY +I   A+   I
Sbjct: 14  LVAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKLYVEIQEKALCWFI 73

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI  AT+ A+  AVE L + PR ALIDG   P+ L   +  V+KGDS  
Sbjct: 74  ARAEVEEIDQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQ-LSVPSAPVVKGDSKV 132

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P
Sbjct: 133 PAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 192

Query: 204 LR 205
           +R
Sbjct: 193 VR 194


>gi|291519510|emb|CBK74731.1| Ribonuclease HII [Butyrivibrio fibrisolvens 16/4]
          Length = 254

 Score =  260 bits (666), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 89/190 (46%), Positives = 122/190 (64%), Gaps = 3/190 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E    E+    + GIDEVGRG LAGPVV A +IL  +     INDSKK++  KREELY
Sbjct: 62  EYEYKYWEQ-YDYIGGIDEVGRGPLAGPVVTACVILPKDCDILYINDSKKLTAAKREELY 120

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E+I   AI +SI +AS + ID  NI +AT +A+  A+E  +V P+  L D  +IP+ +  
Sbjct: 121 EEIMEKAISVSIGAASEERIDDINILQATYEAMRQAIEECKVEPQLLLNDAVTIPQ-VKI 179

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +IKGD+ S+SI AASIIAKVTRDR+M      +P+Y F ++ GY +A+H + +K+ 
Sbjct: 180 PQVPIIKGDAKSISIGAASIIAKVTRDRMMVEYDSIFPEYHFANNKGYGSAEHIEALKKY 239

Query: 192 GPSCIHRLTF 201
           GP  IHR +F
Sbjct: 240 GPCPIHRRSF 249


>gi|255506601|ref|ZP_05382240.1| ribonuclease HII [Chlamydia trachomatis D(s)2923]
 gi|289525074|emb|CBJ14544.1| ribonuclease HII [Chlamydia trachomatis Sweden2]
 gi|296434614|gb|ADH16792.1| ribonuclease HII [Chlamydia trachomatis E/150]
 gi|296438332|gb|ADH20485.1| ribonuclease HII [Chlamydia trachomatis E/11023]
          Length = 217

 Score =  260 bits (666), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 88/195 (45%), Positives = 117/195 (60%), Gaps = 4/195 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E    E+    VAGIDE GRG LAGPVV  A IL    +  GI+DSKK++ K+R  LYE
Sbjct: 17  FENQAIEQGYSQVAGIDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQRRYLYE 76

Query: 74  KITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +         +   S + ID+ NI +AT +A+  A+ +L+  P   L+DG  +P  +P 
Sbjct: 77  LLLEDPEVDCGVGVVSVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLFLPHKIP- 135

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
            +  +IKGD+ S+SIAAASIIAK  RD LMR  H +YP+YGFD H GY TA H Q +K  
Sbjct: 136 -SLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHLQALKHF 194

Query: 192 GPSCIHRLTFRPLRN 206
           GP   HR +F P++ 
Sbjct: 195 GPCVYHRKSFSPVKE 209


>gi|290580555|ref|YP_003484947.1| putative ribonuclease HII [Streptococcus mutans NN2025]
 gi|254997454|dbj|BAH88055.1| putative ribonuclease HII [Streptococcus mutans NN2025]
          Length = 260

 Score =  260 bits (666), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 87/200 (43%), Positives = 124/200 (62%), Gaps = 6/200 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  +  +    +AGIDEVGRG LAGPVV A +IL  N     +NDSKKI  KK EE+
Sbjct: 58  LRYEKDLYLQGYQAIAGIDEVGRGPLAGPVVAACVILPKNCKIRHLNDSKKIPKKKHEEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127
           Y+++   A+ I I   S + ID+ NI++AT  A+  A+++LQ     P   LID  ++  
Sbjct: 118 YKQVVKVALAIGIGRISSEMIDQVNIYEATKMAMLQAIDDLQGLVSRPDYLLIDAMNL-- 175

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +     ++IKGD+ SLSIAAASI+AKVTRDR+M    + YP YGF  +VGY T +H + 
Sbjct: 176 GISIPQSSIIKGDAHSLSIAAASIVAKVTRDRMMIGYDEIYPGYGFAQNVGYGTKQHLEG 235

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           ++  G + IHR TF P++++
Sbjct: 236 LETLGVTPIHRRTFEPIKSM 255


>gi|330975385|gb|EGH75451.1| ribonuclease HII [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 217

 Score =  260 bits (666), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 90/182 (49%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  KRE+LY +I   A+   I
Sbjct: 13  LVAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEAKREKLYVEIQEKALCWFI 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI  AT+ A+  AVE L + PR ALIDG   P+ L   +  V+KGDS  
Sbjct: 73  ARAEVEEIDQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQ-LSVPSAPVVKGDSKV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P
Sbjct: 132 PAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 191

Query: 204 LR 205
           +R
Sbjct: 192 VR 193


>gi|154251159|ref|YP_001411983.1| ribonuclease H [Parvibaculum lavamentivorans DS-1]
 gi|189043635|sp|A7HQZ3|RNH2_PARL1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|154155109|gb|ABS62326.1| Ribonuclease H [Parvibaculum lavamentivorans DS-1]
          Length = 269

 Score =  260 bits (666), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 90/202 (44%), Positives = 121/202 (59%), Gaps = 1/202 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           +P  P F  E          V G+DE GRG LAGPVV AA+I+D    P G+NDSKK+  
Sbjct: 44  LPLLPDFRFEIE-EGAPARLVCGVDEAGRGPLAGPVVAAAVIIDLTRCPEGLNDSKKLDA 102

Query: 66  KKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
            +R +L  ++   A I +  AS + ID+ NI  AT+ A+  AV +L   P  ALIDG   
Sbjct: 103 ARRADLLAELADCAEIGVGIASVEEIDEINILHATMLAMTRAVASLPRAPHIALIDGNRC 162

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  L C + AVI GD+++ SIAAASI+AKVTRDR+M    + +P YGF+ H+GY T +H 
Sbjct: 163 PPSLACASRAVIGGDALARSIAAASIVAKVTRDRMMAALAETHPGYGFEKHMGYSTPEHF 222

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
             +   GP  IHR +F P+R +
Sbjct: 223 DALSRLGPCAIHRRSFAPVRKM 244


>gi|149907539|ref|ZP_01896286.1| ribonuclease HII [Moritella sp. PE36]
 gi|149809209|gb|EDM69138.1| ribonuclease HII [Moritella sp. PE36]
          Length = 199

 Score =  260 bits (666), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 87/183 (47%), Positives = 115/183 (62%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR+ L+ +I   A+  SI
Sbjct: 12  LVAGVDEVGRGPLVGDVVTAAVILDPNNPIVGLTDSKKLSDKKRQLLFPEIKEKALAWSI 71

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
              S   ID+ NI +AT+ A+  AV  L + P    IDG   P  LP  A A++KGD   
Sbjct: 72  GRCSPSEIDELNILQATMVAMQRAVAGLTLQPEHVFIDGNRCPA-LPMPAEAIVKGDLRV 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKV RD  M   H++YP+YGF  H GYPT  H + + E GP+  +R +F+P
Sbjct: 131 AEISAASILAKVVRDAEMDELHERYPEYGFAQHKGYPTKAHMEKLAELGPTEEYRKSFKP 190

Query: 204 LRN 206
           ++ 
Sbjct: 191 VQR 193


>gi|217977760|ref|YP_002361907.1| Ribonuclease H [Methylocella silvestris BL2]
 gi|217503136|gb|ACK50545.1| Ribonuclease H [Methylocella silvestris BL2]
          Length = 208

 Score =  260 bits (666), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 103/206 (50%), Positives = 136/206 (66%), Gaps = 1/206 (0%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           M    I +RP F LE  +  +++WPVAG+DE GRG LAGPV  AA+ILDP+N+P G+NDS
Sbjct: 1   MAEKPILDRPDFRLERKLLRRDVWPVAGVDEAGRGPLAGPVAAAAVILDPDNLPRGLNDS 60

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           K+++ ++RE+LYE I   A+ +++  +S + ID  NI +AT  A+  A+  L   PR  L
Sbjct: 61  KQLTREEREKLYESIMKRALAVAVGFSSVKEIDAVNIRQATFRAMRRALAALAASPRYVL 120

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           IDG  +  DL C+   ++KGD+  LSIAAASI+AKVTRDRLM      +P YGF  HVGY
Sbjct: 121 IDGNDLAPDLCCEGETIVKGDASILSIAAASIVAKVTRDRLMSRLCAVHPVYGFSQHVGY 180

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLR 205
            T  H Q I+  GP   HRLTFRP R
Sbjct: 181 GTPAHLQAIEAHGPCPFHRLTFRPFR 206


>gi|20807898|ref|NP_623069.1| ribonuclease HII [Thermoanaerobacter tengcongensis MB4]
 gi|39932431|sp|Q8R9X9|RNH2_THETN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|20516465|gb|AAM24673.1| Ribonuclease HII [Thermoanaerobacter tengcongensis MB4]
          Length = 241

 Score =  260 bits (666), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 85/189 (44%), Positives = 114/189 (60%), Gaps = 2/189 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  + E+ +  +AG+DE GRG L GPVV A +IL        INDSKK+  +KRE+L E
Sbjct: 47  YEKKLYEEGLNFIAGVDEAGRGPLVGPVVAACVILPKEIFIPEINDSKKLPEEKREKLAE 106

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   AI   I     + ID+ NI  ATL A+  A+  ++      L+D  SIP D+P +
Sbjct: 107 VIKKEAISYGIGIVDCREIDEINILNATLKAMKKAIFEVKEKIEYLLVDAISIP-DMPIK 165

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              ++KGDS S+SIAAASI+AKV RDR+MR  HK YP Y F  + GY T +H + +K+ G
Sbjct: 166 QLPIVKGDSKSISIAAASILAKVERDRIMREYHKLYPQYNFAKNKGYGTKEHIEALKKYG 225

Query: 193 PSCIHRLTF 201
           P  IHR T+
Sbjct: 226 PCPIHRRTY 234


>gi|225028010|ref|ZP_03717202.1| hypothetical protein EUBHAL_02279 [Eubacterium hallii DSM 3353]
 gi|224954724|gb|EEG35933.1| hypothetical protein EUBHAL_02279 [Eubacterium hallii DSM 3353]
          Length = 251

 Score =  260 bits (666), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 84/196 (42%), Positives = 117/196 (59%), Gaps = 6/196 (3%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E    +     + GIDEVGRG LAGPVV  A++L   +    INDSKK+S KKREEL+
Sbjct: 60  QYEKEYSQ--YDFICGIDEVGRGPLAGPVVAGAVVLPKGSRILYINDSKKLSAKKREELF 117

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           + I   A+ + I  AS + ID+ NI +AT +A+  A+ NL V P   L D   IP  +  
Sbjct: 118 DIIKEEAVSVGIGMASPERIDEINILQATYEAMRQAIANLSVKPELLLNDAVMIP-GVDI 176

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   +IKGD+ S+SI AASI+AKV RD +M    K +P Y F S+ GY + +H + +   
Sbjct: 177 KQVPIIKGDAKSISIGAASIMAKVYRDHMMEEYDKVFPGYDFASNKGYGSKEHIEALHRL 236

Query: 192 GPSCIHRLTFRPLRNL 207
           GP  IHR +F  L+N+
Sbjct: 237 GPCPIHRCSF--LKNI 250


>gi|329296122|ref|ZP_08253458.1| ribonuclease H [Plautia stali symbiont]
          Length = 208

 Score =  260 bits (666), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 86/184 (46%), Positives = 113/184 (61%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  L+++I   A+  S
Sbjct: 10  RLIAGVDEVGRGPLVGAVVTAAVILDPARPIAGLADSKKLSEKRRLALFDEIKEKALAWS 69

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A  + ID+ NI  AT+ A+  AV  L + P   LIDG   P  LP  + AV+KGDS+
Sbjct: 70  LGRAEPEEIDQLNILHATMLAMQRAVAGLHIAPDFILIDGNRCPA-LPMPSQAVVKGDSL 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASIIAKVT DR M      +P YGF  H GYPTA H + + + G +  HR +F 
Sbjct: 129 VREISAASIIAKVTCDREMAELDLLFPQYGFAQHKGYPTALHMEKLTQFGATPHHRRSFA 188

Query: 203 PLRN 206
           P+RN
Sbjct: 189 PVRN 192


>gi|152979547|ref|YP_001345176.1| ribonuclease HII [Actinobacillus succinogenes 130Z]
 gi|171704350|sp|A6VQJ4|RNH2_ACTSZ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|150841270|gb|ABR75241.1| Ribonuclease H [Actinobacillus succinogenes 130Z]
          Length = 202

 Score =  260 bits (666), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 84/187 (44%), Positives = 114/187 (60%), Gaps = 2/187 (1%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +    +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L  +I   A+
Sbjct: 8   QGYGLIAGVDEVGRGPLVGAVVTAAVILDPNNPISGLADSKKLSEKKRLVLAAEIKEKAL 67

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             S+  A  + ID+ NI  AT+ A+  AV++L+++P   L+DG  +PE L   A A+IKG
Sbjct: 68  AWSLGRAEAEEIDELNILHATMLAMRRAVKSLKILPHLVLVDGNRVPE-LDMPAQAIIKG 126

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D     I+AASI+AKV RD+ M    K++P Y F  H GYPT  H + +   G    HR 
Sbjct: 127 DGKVAEISAASILAKVARDQEMETLDKQFPQYEFAKHKGYPTKVHLEKLMRFGALPQHRR 186

Query: 200 TFRPLRN 206
           +F P+R 
Sbjct: 187 SFAPVRK 193


>gi|167855723|ref|ZP_02478479.1| ribonuclease HII [Haemophilus parasuis 29755]
 gi|167853179|gb|EDS24437.1| ribonuclease HII [Haemophilus parasuis 29755]
          Length = 195

 Score =  260 bits (666), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 85/181 (46%), Positives = 113/181 (62%), Gaps = 2/181 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV  A+ILDPN    G+ DSKK+S K+R  L E+I + A+  S+
Sbjct: 9   FIAGVDEVGRGPLVGAVVTVAVILDPNQPIEGLADSKKLSEKRRLALAEEIKAKALCWSL 68

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID+ NI  AT+ A+  AV  L++ P   L+DG  IP  LP  A AV+KGDS  
Sbjct: 69  GRAEPDEIDQLNILHATMLAMQRAVAGLRIQPDFVLVDGNRIPT-LPMPAQAVVKGDSFV 127

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKV RD+ M    K+YP+YGF  H GYPT  H + ++  G +  HR +F P
Sbjct: 128 AEISAASILAKVARDQEMDELDKQYPEYGFAQHKGYPTKLHFEKLESLGVTPYHRKSFAP 187

Query: 204 L 204
           +
Sbjct: 188 V 188


>gi|304384964|ref|ZP_07367310.1| ribonuclease HII [Pediococcus acidilactici DSM 20284]
 gi|304329158|gb|EFL96378.1| ribonuclease HII [Pediococcus acidilactici DSM 20284]
          Length = 255

 Score =  260 bits (666), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 94/197 (47%), Positives = 125/197 (63%), Gaps = 3/197 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F LE  + +     VAGIDEVGRG LAGPVV AA++LD +     +NDSK++S K R
Sbjct: 55  QKRFSLENELWQSGKQFVAGIDEVGRGCLAGPVVTAAVVLDDHFDLVEVNDSKQLSLKLR 114

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E LY +I S A+ + I   S+Q ID+  I  AT  A+  A+ +L V P   LID   +P 
Sbjct: 115 ESLYAQILSEAVSVGIGVRSNQQIDQMGILNATKAAMNDAISHLNVTPEHLLIDAVQVPT 174

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +P     + KGD+ S+SIAAASI+AKV RD LMR  +K YP YGFD +VGY T +H + 
Sbjct: 175 SIPKTV--MYKGDAKSISIAAASIVAKVYRDHLMRSYNKVYPGYGFDQNVGYGTKQHLEG 232

Query: 188 IKEKGPSCIHRLTFRPL 204
           +KE G + +HRLTF P+
Sbjct: 233 LKELGVTPLHRLTFEPV 249


>gi|226945927|ref|YP_002801000.1| ribonuclease HII [Azotobacter vinelandii DJ]
 gi|259494062|sp|C1DST2|RNH2_AZOVD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|226720854|gb|ACO80025.1| Ribonuclease HII [Azotobacter vinelandii DJ]
          Length = 207

 Score =  260 bits (666), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 93/184 (50%), Positives = 115/184 (62%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S  +RE L E+I   A+   I
Sbjct: 13  LVAGVDEVGRGPLCGAVVTAAVILDPERPILGLNDSKKLSEARREALSEEIREKALAWCI 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI  AT+ A+  AVE L V PR ALIDG   P+ L      VIKGD+  
Sbjct: 73  ARAEVEEIDRLNILHATMLAMRRAVEGLAVTPRLALIDGNRCPK-LAVPCAPVIKGDAQV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV RDR M +    YP YG   H GYPTA H + +   GP+ IHR +F P
Sbjct: 132 PAIAAASILAKVARDREMLVLDALYPGYGLARHKGYPTAVHLEALARLGPTPIHRRSFAP 191

Query: 204 LRNL 207
           +R L
Sbjct: 192 VREL 195


>gi|307129834|ref|YP_003881850.1| ribonuclease HII [Dickeya dadantii 3937]
 gi|306527363|gb|ADM97293.1| ribonuclease HII [Dickeya dadantii 3937]
          Length = 198

 Score =  260 bits (666), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 85/183 (46%), Positives = 114/183 (62%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDPN    G+ DSK +S K+R  LY++I   A+  S+
Sbjct: 12  CIAGVDEVGRGPLVGAVVTAAVILDPNRPIAGLADSKTLSEKRRLALYDEIREKALAWSL 71

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID  NI  AT+ A+  AV  L + P   LIDG   P  LP  + AV+KGDS  
Sbjct: 72  GRAEPEEIDSLNILHATMLAMQRAVAGLPITPDFVLIDGNRCP-SLPMPSQAVVKGDSRV 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M +  +++P+YGF  H GYPTA H + +   G +  HR +F P
Sbjct: 131 AEISAASILAKVTRDREMEVLDQQFPEYGFAQHKGYPTAYHLEKLATLGATLHHRRSFAP 190

Query: 204 LRN 206
           ++ 
Sbjct: 191 VKR 193


>gi|330896074|gb|EGH28295.1| ribonuclease HII [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330936802|gb|EGH40959.1| ribonuclease HII [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 218

 Score =  260 bits (666), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 89/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE+LY +I   A+   I
Sbjct: 14  LVAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKLYVEIQEKALCWFI 73

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI  AT+ A+  AVE L + PR ALIDG   P+ L   +  V+KGDS  
Sbjct: 74  ARAEVEEIDQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQ-LSVPSAPVVKGDSKV 132

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P
Sbjct: 133 PAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 192

Query: 204 LR 205
           +R
Sbjct: 193 VR 194


>gi|227889894|ref|ZP_04007699.1| ribonuclease HII [Lactobacillus johnsonii ATCC 33200]
 gi|227849338|gb|EEJ59424.1| ribonuclease HII [Lactobacillus johnsonii ATCC 33200]
          Length = 250

 Score =  260 bits (665), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 87/199 (43%), Positives = 127/199 (63%), Gaps = 4/199 (2%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F  E    +K+   VAG+DEVGRG LAGPVV AA+IL  +     +NDSKK+S KKR
Sbjct: 52  QSRFSYEKEFWQKD-RLVAGVDEVGRGPLAGPVVTAAVILPHDFDLIDVNDSKKLSPKKR 110

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           + L+ KI   A+ +S+  A++  ID+ NI++A   A+ HAV+ L+V P + L+D  ++P 
Sbjct: 111 QALFPKILEKAVSVSVGLANNDVIDQINIYEADRVAMAHAVQGLKVKPDALLVDAMNVPL 170

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           ++P     +I GD+ S SIAAASI+AKV RD LM    + YP+Y F  + GY T +H + 
Sbjct: 171 NIP--QVKLIHGDAKSNSIAAASIVAKVFRDNLMDAYGELYPEYDFKHNAGYGTREHMEA 228

Query: 188 IKEKGPSCIHRLTFRPLRN 206
           +K+ GP+ IHR +F P+  
Sbjct: 229 LKKYGPTPIHRRSFAPVSE 247


>gi|222528967|ref|YP_002572849.1| ribonuclease HII [Caldicellulosiruptor bescii DSM 6725]
 gi|254807963|sp|B9MQX2|RNH2_ANATD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|222455814|gb|ACM60076.1| Ribonuclease H [Caldicellulosiruptor bescii DSM 6725]
          Length = 206

 Score =  260 bits (665), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 86/197 (43%), Positives = 128/197 (64%), Gaps = 4/197 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           FE+E  +  +    + G+DE GRG LAGPV  AA+++D   I  G+ DSKK++ KKRE+L
Sbjct: 10  FEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREKL 69

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +E+I   +I  S++    + ID+ NI+ AT  A+ +A+ENL++ P   L+DG  IP +L 
Sbjct: 70  FEEIIKESIAYSVAMVDSKVIDEININNATFLAMKNAIENLKIEPDIVLVDGYKIP-NLG 128

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               A+IKGD  S SIA ASI+AKV+RDR +     KYP Y F+ H GY T +H +++++
Sbjct: 129 FNQRAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPLYKFEKHKGYGTKEHIEILQK 188

Query: 191 KGPSCIHRLTFRPLRNL 207
            GP  IHR++F  L+N+
Sbjct: 189 YGPCEIHRISF--LKNI 203


>gi|322831602|ref|YP_004211629.1| Ribonuclease H [Rahnella sp. Y9602]
 gi|321166803|gb|ADW72502.1| Ribonuclease H [Rahnella sp. Y9602]
          Length = 198

 Score =  260 bits (665), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 85/183 (46%), Positives = 113/183 (61%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP N   G+ DSKK+S K+RE LY +I   A+  S+
Sbjct: 12  CIAGVDEVGRGPLVGAVVTAAVILDPANPIAGLADSKKLSEKRREALYIEIKEKALAWSL 71

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  + A++KGDS  
Sbjct: 72  GRAEPHEIDELNILHATMLAMQRAVAGLCITPDMVLIDGNRCPK-LPMASQAIVKGDSKV 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M     ++P+YGF  H GYPT  H + +   G +  HR +F P
Sbjct: 131 AEISAASILAKVTRDREMVELDLQFPEYGFAKHKGYPTPVHLESLARLGATTHHRRSFSP 190

Query: 204 LRN 206
           ++ 
Sbjct: 191 VKR 193


>gi|50119985|ref|YP_049152.1| ribonuclease HII [Pectobacterium atrosepticum SCRI1043]
 gi|73917607|sp|Q6D8C9|RNH2_ERWCT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|49610511|emb|CAG73956.1| ribonuclease HII [Pectobacterium atrosepticum SCRI1043]
          Length = 198

 Score =  260 bits (665), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 86/184 (46%), Positives = 116/184 (63%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP     G+ DSK++S K+R  LY++I   A+  S+
Sbjct: 12  CIAGVDEVGRGPLVGAVVTAAVILDPTRPIVGLADSKQLSEKRRLSLYDEIKEKALAWSL 71

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID+ NI  AT+ A+  AV  L ++P   LIDG   P  LP  A AV+KGDS  
Sbjct: 72  GRAEPEEIDQLNILHATMLAMQRAVAALAIVPDFVLIDGNRCPA-LPMPAQAVVKGDSRV 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M    +++PDYGF  H GYPTA H + +   G +  HR +F P
Sbjct: 131 AEISAASIMAKVTRDREMVELDQRFPDYGFAQHKGYPTAFHLEKLAALGATEFHRRSFAP 190

Query: 204 LRNL 207
           ++ +
Sbjct: 191 VKRV 194


>gi|283798046|ref|ZP_06347199.1| ribonuclease HII [Clostridium sp. M62/1]
 gi|291074350|gb|EFE11714.1| ribonuclease HII [Clostridium sp. M62/1]
 gi|295091815|emb|CBK77922.1| Ribonuclease HII [Clostridium cf. saccharolyticum K10]
          Length = 223

 Score =  260 bits (665), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 84/190 (44%), Positives = 109/190 (57%), Gaps = 3/190 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E          + GIDE GRG LAGPVV AA IL  +     +NDSKK++ K+REEL+
Sbjct: 21  EYERKYASCGF--ICGIDEAGRGPLAGPVVAAACILPTDCEILYLNDSKKLTEKRREELF 78

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I   A+   +   S   ID+ NI +AT +A+  AVE L V P   L D   IP     
Sbjct: 79  VEIQEKAVSFGVGIVSPAVIDEINILQATYEAMRQAVEKLSVRPDVFLNDAVVIPGIDES 138

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   +IKGD+ S+SIAAASI+AKVTRD +M    + YP+YGF  H GY T  H   ++E 
Sbjct: 139 RQVKIIKGDAKSVSIAAASILAKVTRDHMMEEYDRLYPEYGFAKHKGYGTKAHLDAVREH 198

Query: 192 GPSCIHRLTF 201
           G   IHR +F
Sbjct: 199 GMCPIHRRSF 208


>gi|330950666|gb|EGH50926.1| ribonuclease HII [Pseudomonas syringae Cit 7]
          Length = 218

 Score =  260 bits (665), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 89/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE+LY +I   A+   I
Sbjct: 14  LVAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKLYVEIQEKALCWFI 73

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI  AT+ A+  AVE L + PR ALIDG   P+ L   +  V+KGDS  
Sbjct: 74  ARAEVEEIDQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQ-LSVPSAPVVKGDSKV 132

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P
Sbjct: 133 PAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 192

Query: 204 LR 205
           +R
Sbjct: 193 VR 194


>gi|251793243|ref|YP_003007971.1| ribonuclease HII [Aggregatibacter aphrophilus NJ8700]
 gi|247534638|gb|ACS97884.1| ribonuclease HII [Aggregatibacter aphrophilus NJ8700]
          Length = 195

 Score =  260 bits (665), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 84/187 (44%), Positives = 116/187 (62%), Gaps = 1/187 (0%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +    +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L E I   A+
Sbjct: 8   QGYELIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRALLAEDIKQKAL 67

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             ++  A    ID+ NI  A++ A+  A+++L++ P   L+DG  IP +L   A AV+KG
Sbjct: 68  AWALGRAEPHEIDELNILHASMLAMERAIKHLKIQPHFVLVDGNRIPPNLGMPAQAVVKG 127

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D++   I+AASI+AKV RD+ M    KKYP Y F  H GYPT  H + + E G    +R 
Sbjct: 128 DALVAEISAASILAKVARDQEMMELDKKYPQYAFAKHKGYPTKLHLEKLAEFGVLPEYRR 187

Query: 200 TFRPLRN 206
           +F P++N
Sbjct: 188 SFAPIKN 194


>gi|24379434|ref|NP_721389.1| ribonuclease HII [Streptococcus mutans UA159]
 gi|39932397|sp|Q8DUE1|RNH2_STRMU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|24377368|gb|AAN58695.1|AE014939_2 putative ribonuclease HII [Streptococcus mutans UA159]
          Length = 260

 Score =  260 bits (665), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 87/200 (43%), Positives = 124/200 (62%), Gaps = 6/200 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  +  +    +AGIDEVGRG LAGPVV A +IL  N     +NDSKKI  KK EE+
Sbjct: 58  LRYEKDLYLQGYQAIAGIDEVGRGPLAGPVVAACVILPKNCKIRHLNDSKKIPKKKHEEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127
           Y+++   A+ I I   S + ID+ NI++AT  A+  A+++LQ     P   LID  ++  
Sbjct: 118 YKQVVKVALAIGIGRISSEMIDQVNIYEATKMAMLQAIDDLQGLVSRPDYLLIDAMNL-- 175

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +     ++IKGD+ SLSIAAASI+AKVTRDR+M    + YP YGF  +VGY T +H + 
Sbjct: 176 GISIPQSSIIKGDAHSLSIAAASIVAKVTRDRMMIGYDEIYPGYGFAQNVGYGTKQHLEG 235

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           ++  G + IHR TF P++++
Sbjct: 236 LETLGVTPIHRRTFEPIKSM 255


>gi|227903862|ref|ZP_04021667.1| ribonuclease HII [Lactobacillus acidophilus ATCC 4796]
 gi|227868253|gb|EEJ75674.1| ribonuclease HII [Lactobacillus acidophilus ATCC 4796]
          Length = 252

 Score =  260 bits (665), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 90/198 (45%), Positives = 124/198 (62%), Gaps = 4/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E    +K    VAG+DEVGRG LAGPVV AA+I+D +     +NDSKK+S +KR +
Sbjct: 56  RFLYEKQFWQKG-QLVAGVDEVGRGPLAGPVVTAAVIIDQDFDLLDVNDSKKLSPEKRLK 114

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY KI   A+ +++   + Q ID+ NI++A   A+  AV  L + P + L+D  ++P DL
Sbjct: 115 LYPKILEEAVSVAVGVKNAQVIDQINIYEADRQAMAQAVNALDIKPDALLVDAMNVPVDL 174

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +IKGD+ S SIAAASI+AKV RD+LM    K YP YGF  + GY T +H   +K
Sbjct: 175 P--QIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPHYGFSRNAGYGTKEHIDALK 232

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + GP+ IHR TF P+ + 
Sbjct: 233 QYGPTHIHRKTFAPVSDF 250


>gi|256851135|ref|ZP_05556524.1| ribonuclease HII [Lactobacillus jensenii 27-2-CHN]
 gi|260660559|ref|ZP_05861474.1| ribonuclease HII [Lactobacillus jensenii 115-3-CHN]
 gi|282934516|ref|ZP_06339770.1| ribonuclease HII [Lactobacillus jensenii 208-1]
 gi|297206001|ref|ZP_06923396.1| ribonuclease H [Lactobacillus jensenii JV-V16]
 gi|256616197|gb|EEU21385.1| ribonuclease HII [Lactobacillus jensenii 27-2-CHN]
 gi|260548281|gb|EEX24256.1| ribonuclease HII [Lactobacillus jensenii 115-3-CHN]
 gi|281301409|gb|EFA93699.1| ribonuclease HII [Lactobacillus jensenii 208-1]
 gi|297149127|gb|EFH29425.1| ribonuclease H [Lactobacillus jensenii JV-V16]
          Length = 252

 Score =  260 bits (665), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 93/197 (47%), Positives = 121/197 (61%), Gaps = 4/197 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F+ E    +     VAG+DEVGRG LAGPVV AA+ILD +     +NDSKK+S KKR E
Sbjct: 54  RFQYEQKAWKAG-SIVAGVDEVGRGPLAGPVVTAAVILDDSFDLVEVNDSKKLSPKKRLE 112

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY +I   A+ + I   S + ID+ NI++A   A+  AV NL + P   L+D  ++P D+
Sbjct: 113 LYPQILDKAVAVGIGVGSPELIDRINIYEADRVAMAQAVNNLAIKPDLLLVDAMNVPVDI 172

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             +   +IKGDS S SIAAASIIAKV RD LM    K YP Y F+ + GY TAKH   +K
Sbjct: 173 --KQIELIKGDSKSNSIAAASIIAKVFRDELMNDYAKVYPQYDFEHNAGYGTAKHIAALK 230

Query: 190 EKGPSCIHRLTFRPLRN 206
           E G + IHR +F P+  
Sbjct: 231 EFGATPIHRRSFSPVSE 247


>gi|317129225|ref|YP_004095507.1| ribonuclease H [Bacillus cellulosilyticus DSM 2522]
 gi|315474173|gb|ADU30776.1| Ribonuclease H [Bacillus cellulosilyticus DSM 2522]
          Length = 260

 Score =  260 bits (665), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 79/194 (40%), Positives = 118/194 (60%), Gaps = 3/194 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  + ++    + G+DEVGRG LAGPVV + +IL P     G+ DSK++S +KREE Y 
Sbjct: 64  YEEDLWKEGYHYIGGVDEVGRGPLAGPVVASCVILSPEFYLAGLTDSKQLSKQKREEFYC 123

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   AI + I  A+ + ID+ NI++AT  A+  A+  L + P   L+D   +P  LP  
Sbjct: 124 NIMEEAISVGIGIATSEEIDQINIYEATKLAMKRAIHKLSIEPSYLLLDAMKLPIGLP-- 181

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SIAA+S+IAKVTRD  M    + YP+Y F  ++GY T +H   I++ G
Sbjct: 182 QMSLIKGDTKSVSIAASSVIAKVTRDNYMEEIAQTYPEYRFQKNMGYGTKEHLHAIEQHG 241

Query: 193 PSCIHRLTFRPLRN 206
            +  HR +F P++ 
Sbjct: 242 ITKEHRRSFAPVKE 255


>gi|159042579|ref|YP_001531373.1| ribonuclease HII [Dinoroseobacter shibae DFL 12]
 gi|189043594|sp|A8LJU6|RNH2_DINSH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157910339|gb|ABV91772.1| ribonuclease HII [Dinoroseobacter shibae DFL 12]
          Length = 206

 Score =  260 bits (665), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 94/199 (47%), Positives = 133/199 (66%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           RPHF+ E  +  +    +AG+DEVGRG LAGPV+ AA++LDP  IP G+NDSK+++ K+R
Sbjct: 3   RPHFQFETDLAARGYLRIAGVDEVGRGPLAGPVMAAAVVLDPGAIPEGLNDSKQVTAKRR 62

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           E L  ++   A + +  A    ID+ NI +A   A+  A++ L   P  ALIDGR  P+D
Sbjct: 63  EALAAQLAQVAQVGVGVAEVAEIDRLNIRRAAHLAMLRALDALPAPPDMALIDGRDRPDD 122

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LPC A A+IKGD+ SLSIAAASI+AKV RDR+M     ++P YG++++ GYPT  H+  +
Sbjct: 123 LPCAAHAIIKGDTKSLSIAAASIVAKVARDRVMTALAAEFPGYGWETNAGYPTQAHRAAL 182

Query: 189 KEKGPSCIHRLTFRPLRNL 207
            + G S  HR +FRP+ N+
Sbjct: 183 LDIGVSPHHRRSFRPVHNI 201


>gi|326389492|ref|ZP_08211059.1| Ribonuclease H [Thermoanaerobacter ethanolicus JW 200]
 gi|325994497|gb|EGD52922.1| Ribonuclease H [Thermoanaerobacter ethanolicus JW 200]
          Length = 242

 Score =  260 bits (665), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 83/189 (43%), Positives = 114/189 (60%), Gaps = 2/189 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  + + N+  +AG+DE GRG L GP+V A +IL        INDSKK+S +KRE L E
Sbjct: 48  YENQLYQLNLNFIAGVDEAGRGPLVGPIVAACVILPKEVFIPEINDSKKLSEEKREVLSE 107

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   AI  +I     + IDK NI  AT  A+  A+  +Q      L+D  +IP+ +   
Sbjct: 108 VIKKVAISYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQ-IEIN 166

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             A++KGDS S+SIAAASI+AKV RD++M+  HK YP Y F+ + GY T +H + +K+ G
Sbjct: 167 QKAIVKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYG 226

Query: 193 PSCIHRLTF 201
           P  IHR TF
Sbjct: 227 PCPIHRKTF 235


>gi|311280848|ref|YP_003943079.1| Ribonuclease H [Enterobacter cloacae SCF1]
 gi|308750043|gb|ADO49795.1| Ribonuclease H [Enterobacter cloacae SCF1]
          Length = 198

 Score =  260 bits (665), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 87/183 (47%), Positives = 112/183 (61%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L+++I   A+  S+
Sbjct: 11  LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALFDEIKEKALCWSL 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID+ NI  AT+ A+  AV  L + P   LIDG   P  LP  + AV+KGDS  
Sbjct: 71  GRAEPHEIDELNILHATMLAMQRAVAGLHITPEYVLIDGNRCPA-LPVPSMAVVKGDSRV 129

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E GP+  HR +F P
Sbjct: 130 AEISAASILAKVTRDAEMAELDVTFPQYGFAQHKGYPTAFHLEKLAEHGPTEQHRRSFGP 189

Query: 204 LRN 206
           ++ 
Sbjct: 190 VKR 192


>gi|256003759|ref|ZP_05428747.1| Ribonuclease H [Clostridium thermocellum DSM 2360]
 gi|281417482|ref|ZP_06248502.1| Ribonuclease H [Clostridium thermocellum JW20]
 gi|255992320|gb|EEU02414.1| Ribonuclease H [Clostridium thermocellum DSM 2360]
 gi|281408884|gb|EFB39142.1| Ribonuclease H [Clostridium thermocellum JW20]
 gi|316940489|gb|ADU74523.1| Ribonuclease H [Clostridium thermocellum DSM 1313]
          Length = 261

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/189 (45%), Positives = 120/189 (63%), Gaps = 2/189 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E    ++    +AGIDE GRG LAGPVV AA+IL  +    G+NDSKK++  +RE+L++
Sbjct: 68  YEKEAYQRGYKLIAGIDEAGRGPLAGPVVAAAVILPQDVFIEGLNDSKKLTENQREKLFD 127

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   AI + I     + ID+ NI  AT  A+  AV NL+ +P    ID   + +D+  +
Sbjct: 128 VINDKAIGVGIGIVDEKQIDEINILNATKKAMKLAVGNLKPVPDILFIDSLKL-DDINIE 186

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             +++KGD+ S+SIAAASIIAKVTRDR++R   KKYP YGF  H GY T +H + IK+ G
Sbjct: 187 QNSIVKGDAKSVSIAAASIIAKVTRDRILREMDKKYPMYGFARHKGYGTGEHIEAIKKYG 246

Query: 193 PSCIHRLTF 201
              IHR++F
Sbjct: 247 ICPIHRVSF 255


>gi|15604747|ref|NP_219531.1| ribonuclease HII [Chlamydia trachomatis D/UW-3/CX]
 gi|255310830|ref|ZP_05353400.1| ribonuclease HII [Chlamydia trachomatis 6276]
 gi|255317130|ref|ZP_05358376.1| ribonuclease HII [Chlamydia trachomatis 6276s]
 gi|7227924|sp|O84032|RNH2_CHLTR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|3328419|gb|AAC67619.1| Ribonuclease HII [Chlamydia trachomatis D/UW-3/CX]
 gi|296436469|gb|ADH18639.1| ribonuclease HII [Chlamydia trachomatis G/11222]
 gi|297748160|gb|ADI50706.1| Ribonuclease HII [Chlamydia trachomatis D-EC]
 gi|297749040|gb|ADI51718.1| Ribonuclease HII [Chlamydia trachomatis D-LC]
          Length = 217

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 87/195 (44%), Positives = 117/195 (60%), Gaps = 4/195 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E    E+    VAG+DE GRG LAGPVV  A IL    +  GI+DSKK++ K+R  LYE
Sbjct: 17  FENQAIEQGYSQVAGVDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQRRYLYE 76

Query: 74  KITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +         +   S + ID+ NI +AT +A+  A+ +L+  P   L+DG  +P  +P 
Sbjct: 77  LLLEDPEVDCGVGVISVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLFLPHKVP- 135

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
            +  +IKGD+ S+SIAAASIIAK  RD LMR  H +YP+YGFD H GY TA H Q +K  
Sbjct: 136 -SLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHLQALKHF 194

Query: 192 GPSCIHRLTFRPLRN 206
           GP   HR +F P++ 
Sbjct: 195 GPCVYHRKSFSPVKE 209


>gi|296110320|ref|YP_003620701.1| ribonuclease HII [Leuconostoc kimchii IMSNU 11154]
 gi|295831851|gb|ADG39732.1| ribonuclease HII [Leuconostoc kimchii IMSNU 11154]
          Length = 254

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/198 (42%), Positives = 118/198 (59%), Gaps = 3/198 (1%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E     + M  +AG+DEVGRG LAGPV+ AA+IL  +     + DSK++S  KR++
Sbjct: 58  RFAFERHFWNQGMSDIAGVDEVGRGPLAGPVIAAAVILPHDFNVVEVIDSKQLSADKRDK 117

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY+ I + A+ I +       ID  NI++A   A+  AV+NL   P   LID  ++  +L
Sbjct: 118 LYDLILAQAVSIGVGVVDAPTIDDINIYQAARLAMTKAVQNLAPEPDVLLIDAMTL--NL 175

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +IKGD++S SI AASI+AKVTRDRLM      YP YGF  + GY T  H   ++
Sbjct: 176 PLPQEPLIKGDALSNSIGAASIVAKVTRDRLMADYDDIYPGYGFAKNAGYGTKLHLDQMR 235

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + G + IHR +F P+R+L
Sbjct: 236 QLGITPIHRRSFGPVRDL 253


>gi|296435545|gb|ADH17719.1| ribonuclease HII [Chlamydia trachomatis G/9768]
 gi|296437405|gb|ADH19566.1| ribonuclease HII [Chlamydia trachomatis G/11074]
 gi|297139904|gb|ADH96662.1| ribonuclease HII [Chlamydia trachomatis G/9301]
          Length = 217

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 88/195 (45%), Positives = 117/195 (60%), Gaps = 4/195 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E    E+    VAGIDE GRG LAGPVV  A IL    +  GI+DSKK++ K+R  LYE
Sbjct: 17  FENQAIEQGYSQVAGIDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQRRYLYE 76

Query: 74  KITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +         +   S + ID+ NI +AT +A+  A+ +L+  P   L+DG  +P  +P 
Sbjct: 77  LLLEDPEVDCGVGVVSVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLFLPHKVP- 135

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
            +  +IKGD+ S+SIAAASIIAK  RD LMR  H +YP+YGFD H GY TA H Q +K  
Sbjct: 136 -SLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHLQALKHF 194

Query: 192 GPSCIHRLTFRPLRN 206
           GP   HR +F P++ 
Sbjct: 195 GPCVYHRKSFSPVKE 209


>gi|293390804|ref|ZP_06635138.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951338|gb|EFE01457.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 199

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/195 (41%), Positives = 117/195 (60%), Gaps = 1/195 (0%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
           ++     +    +AG+DEVGRG L G VV AA+ILDP     G+ DSK +S KKR  L E
Sbjct: 1   MDKFTYPQGYELIAGVDEVGRGPLVGAVVTAAVILDPKQTIEGLADSKTLSEKKRLLLAE 60

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   A+  ++  A    ID+ NI  A++ A+  A+++L++ P   L+DG  IP +L   
Sbjct: 61  EIKQKALAWALGRAEPHEIDELNILHASMLAMERAIKHLKIQPHFVLVDGNRIPPNLMIP 120

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
           A AV+KGD++   I+AASI+AKV RD+ M    KKYP Y F  H GYPT  H + ++E G
Sbjct: 121 AQAVVKGDALVPEISAASILAKVARDQEMIELDKKYPPYEFAKHKGYPTKLHLEKLREFG 180

Query: 193 PSCIHRLTFRPLRNL 207
               +R +F P++ L
Sbjct: 181 VLPEYRRSFAPVKKL 195


>gi|87118612|ref|ZP_01074511.1| ribonuclease HII [Marinomonas sp. MED121]
 gi|86166246|gb|EAQ67512.1| ribonuclease HII [Marinomonas sp. MED121]
          Length = 214

 Score =  259 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 88/182 (48%), Positives = 119/182 (65%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG VV AA+ILDPNN    + DSKK+S KKR  L+++I   A+   I+ 
Sbjct: 28  AGSDEAGRGPLAGDVVAAAVILDPNNPIASLADSKKLSEKKRVALFDEIKEKALAFCIAR 87

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           AS   ID+ NI  A++ A+  A+  L+V P  ALIDG  IP+DLPC A AV+KGD    +
Sbjct: 88  ASVAEIDELNILHASMLAMQRAISGLRVTPEHALIDGNRIPKDLPCPAEAVVKGDDRVEA 147

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AKV RD  +    ++YP YG + H GYPTA+H   ++  G + IHR +F P++
Sbjct: 148 ISAASILAKVERDNEISALAERYPGYGLEKHKGYPTAQHLAALETLGVTPIHRQSFGPVK 207

Query: 206 NL 207
            +
Sbjct: 208 RI 209


>gi|125973279|ref|YP_001037189.1| ribonuclease HII [Clostridium thermocellum ATCC 27405]
 gi|189043587|sp|A3DDG7|RNH2_CLOTH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|125713504|gb|ABN51996.1| RNase HII [Clostridium thermocellum ATCC 27405]
          Length = 256

 Score =  259 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/189 (45%), Positives = 120/189 (63%), Gaps = 2/189 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E    ++    +AGIDE GRG LAGPVV AA+IL  +    G+NDSKK++  +RE+L++
Sbjct: 63  YEKEAYQRGYKLIAGIDEAGRGPLAGPVVAAAVILPQDVFIEGLNDSKKLTENQREKLFD 122

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   AI + I     + ID+ NI  AT  A+  AV NL+ +P    ID   + +D+  +
Sbjct: 123 VINDKAIGVGIGIVDEKQIDEINILNATKKAMKLAVGNLKPVPDILFIDSLKL-DDINIE 181

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             +++KGD+ S+SIAAASIIAKVTRDR++R   KKYP YGF  H GY T +H + IK+ G
Sbjct: 182 QNSIVKGDAKSVSIAAASIIAKVTRDRILREMDKKYPMYGFARHKGYGTGEHIEAIKKYG 241

Query: 193 PSCIHRLTF 201
              IHR++F
Sbjct: 242 ICPIHRVSF 250


>gi|241760682|ref|ZP_04758774.1| ribonuclease HII [Neisseria flavescens SK114]
 gi|241318863|gb|EER55389.1| ribonuclease HII [Neisseria flavescens SK114]
          Length = 230

 Score =  259 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/182 (45%), Positives = 108/182 (59%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG L G V  AA+IL  +    G+ DSKK+S KKR+ L + I   A+  SI+ 
Sbjct: 40  AGVDEAGRGPLVGSVFAAAVILPEHFDLPGLTDSKKLSEKKRDILAQLIKEQAVAWSIAF 99

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A    I + NI  AT+ A+  +VE L V P    IDG  +P+DL   A AV+KGDS  + 
Sbjct: 100 ADPDEILQLNILHATMAAMKRSVEGLSVTPDKVWIDGNRVPKDLNVPAEAVVKGDSKIIE 159

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AAS++AK  RD  M    K+YP YGFD H GY TA+H   +K+ G    HR  F P++
Sbjct: 160 ISAASVLAKTARDAEMYELAKRYPQYGFDCHKGYGTAQHLAALKQYGVLPEHRRDFAPVK 219

Query: 206 NL 207
            L
Sbjct: 220 TL 221


>gi|309389199|gb|ADO77079.1| Ribonuclease H [Halanaerobium praevalens DSM 2228]
          Length = 271

 Score =  259 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/196 (42%), Positives = 126/196 (64%), Gaps = 4/196 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           +LE    +K    + GIDE GRG LAGPVV AA++LDP N  +G++DSKK++  KRE L+
Sbjct: 74  QLEKEYSQKGYQVIIGIDEAGRGPLAGPVVAAAVLLDPQNKIYGLDDSKKLNLTKRENLF 133

Query: 73  EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL----QVIPRSALIDGRSIPED 128
           ++I + A + I  A+   IDK+NI +AT  A+  AV++L    Q  P   LIDG ++   
Sbjct: 134 KQIKAKAKVGIGQATSSEIDKYNIREATFTAMKRAVKDLLPKLQKQPDLLLIDGNAVIPG 193

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L  +  ++I GD+   +IAAASIIAKV+RD+L+    +++P+Y  +S+ GY TA+H   +
Sbjct: 194 LTVEQESIIDGDAKVNNIAAASIIAKVSRDKLIYKYAEEFPEYNLESNKGYGTAEHIAAL 253

Query: 189 KEKGPSCIHRLTFRPL 204
           K+ G + IHR +F  +
Sbjct: 254 KKYGSTPIHRKSFARV 269


>gi|197303275|ref|ZP_03168316.1| hypothetical protein RUMLAC_01998 [Ruminococcus lactaris ATCC
           29176]
 gi|197297701|gb|EDY32260.1| hypothetical protein RUMLAC_01998 [Ruminococcus lactaris ATCC
           29176]
          Length = 252

 Score =  259 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 88/186 (47%), Positives = 114/186 (61%), Gaps = 4/186 (2%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII- 81
              + GIDE GRG LAGPVV  A+IL  +     +NDSKK+S  +REELY++I   A+  
Sbjct: 69  YRCICGIDEAGRGPLAGPVVAGAVILPADCEILYLNDSKKLSAARREELYDEIMEKAVAT 128

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
            I  AS   ID+ NI +AT +A+  AV  L   P   L D  +IPE +      +IKGD+
Sbjct: 129 GIGMASPARIDEINILQATYEAMREAVSKLSREPDLLLNDAVTIPE-MTIMQVPIIKGDA 187

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            S+SIAAASI+AKVTRDRLM    K  P+YGF  H GY + +H   I++ GPS IHR TF
Sbjct: 188 KSVSIAAASILAKVTRDRLMIEYDKILPEYGFAGHKGYGSKEHIAAIQKYGPSPIHRRTF 247

Query: 202 RPLRNL 207
             ++N 
Sbjct: 248 --IKNF 251


>gi|58337276|ref|YP_193861.1| ribonuclease HII [Lactobacillus acidophilus NCFM]
 gi|73917609|sp|Q5FKE4|RNH2_LACAC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|58254593|gb|AAV42830.1| Ribonuclease HII [Lactobacillus acidophilus NCFM]
          Length = 250

 Score =  259 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 90/198 (45%), Positives = 124/198 (62%), Gaps = 4/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E    +K    VAG+DEVGRG LAGPVV AA+I+D +     +NDSKK+S +KR +
Sbjct: 54  RFLYEKQFWQKG-QLVAGVDEVGRGPLAGPVVTAAVIIDQDFDLLDVNDSKKLSPEKRLK 112

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY KI   A+ +++   + Q ID+ NI++A   A+  AV  L + P + L+D  ++P DL
Sbjct: 113 LYPKILEEAVSVAVGVKNAQVIDQINIYEADRQAMAQAVNALDIKPDALLVDAMNVPVDL 172

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +IKGD+ S SIAAASI+AKV RD+LM    K YP YGF  + GY T +H   +K
Sbjct: 173 P--QIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPHYGFSRNAGYGTKEHIDALK 230

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + GP+ IHR TF P+ + 
Sbjct: 231 QYGPTHIHRKTFAPVSDF 248


>gi|312898597|ref|ZP_07757987.1| ribonuclease HII [Megasphaera micronuciformis F0359]
 gi|310620516|gb|EFQ04086.1| ribonuclease HII [Megasphaera micronuciformis F0359]
          Length = 266

 Score =  259 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 90/197 (45%), Positives = 129/197 (65%), Gaps = 2/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  +  K    +AGIDE GRG +AGPV +AA+IL    + +G+NDSKK+SHK+REEL
Sbjct: 63  LRYEEKLYAKGYRYIAGIDEAGRGPVAGPVTIAAVILPIRPLIYGLNDSKKVSHKRREEL 122

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ I + AI +S  + S   ID+++I+ AT  A+Y AV+ L + P++ LID   +P DL 
Sbjct: 123 FDTIMNEAIAVSCINFSEADIDRYDIYHATQRAMYTAVKTLDISPQAVLIDAMPLP-DLE 181

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               +++ GD+ S SIAAASIIAKVTRDR+M    ++YP YGF  H GY T  H+  I +
Sbjct: 182 IYHESIVGGDAQSQSIAAASIIAKVTRDRIMEEYDRQYPRYGFAEHKGYLTQTHKDAIAQ 241

Query: 191 KGPSCIHRLTFRPLRNL 207
            GP  IHR +F P++++
Sbjct: 242 YGPCPIHRKSFEPVKSM 258


>gi|104783181|ref|YP_609679.1| ribonuclease HII [Pseudomonas entomophila L48]
 gi|122402183|sp|Q1I640|RNH2_PSEE4 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|95112168|emb|CAK16895.1| ribonuclease HII [Pseudomonas entomophila L48]
          Length = 207

 Score =  259 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 89/182 (48%), Positives = 116/182 (63%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  KR+ L+++I   A+   I
Sbjct: 13  LVAGVDEVGRGPLCGAVVTAAVILDPRRPILGLNDSKKLTEAKRDALFDEIREKALSFCI 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI +AT+ A+  AVE L + P+ ALIDG   P+ L   A  V+KGDS  
Sbjct: 73  ARAEVEEIDRLNILQATMLAMQRAVEGLHITPKLALIDGNRCPK-LAVPAAPVVKGDSQV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKVTRDR M      YP YG   H GYPT  H + +   GP+ IHR +F P
Sbjct: 132 PAIAAASILAKVTRDREMSEFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 191

Query: 204 LR 205
           +R
Sbjct: 192 VR 193


>gi|146297153|ref|YP_001180924.1| ribonuclease H [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|189043571|sp|A4XLE8|RNH2_CALS8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|145410729|gb|ABP67733.1| RNase HII [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 205

 Score =  259 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 89/197 (45%), Positives = 127/197 (64%), Gaps = 4/197 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           FELE  + ++    + G+DE GRG LAGPV  AA+I+D   I  G+ DSKK++ KKRE+L
Sbjct: 10  FELEENLLKEGYRFICGVDEAGRGPLAGPVFAAAVIMDREIIIEGVRDSKKLTPKKREKL 69

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +E+I   +I  S++   ++ ID+ NI+ AT  A+ +A+E L+++P   L+DG  IP DL 
Sbjct: 70  FEEIVKESITYSVAMVDNKTIDEININNATFLAMKNAIEALELVPDIVLVDGYEIP-DLN 128

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               A+IKGD  S SIA ASI+AKV+RDR +      YP Y F+ H GY T +H ++I E
Sbjct: 129 LPQKALIKGDRKSYSIACASILAKVSRDRFITQISSLYPVYKFEKHKGYGTKEHIRLILE 188

Query: 191 KGPSCIHRLTFRPLRNL 207
            GP  IHR +F  L+N+
Sbjct: 189 YGPCEIHRKSF--LKNI 203


>gi|325290406|ref|YP_004266587.1| RNase HII [Syntrophobotulus glycolicus DSM 8271]
 gi|324965807|gb|ADY56586.1| RNase HII [Syntrophobotulus glycolicus DSM 8271]
          Length = 227

 Score =  259 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/196 (42%), Positives = 121/196 (61%), Gaps = 2/196 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
           LE  + ++    VAG+DE GRG LAGPV+ AA IL  +     +NDSKK++ ++RE+L+E
Sbjct: 25  LERKLVKEGFMFVAGVDEAGRGPLAGPVIAAACILPESFDLPYLNDSKKLTARRREDLFE 84

Query: 74  KITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   A   +++    + ID+ NI  A+  A+  A+E L + P   L+DGR    D+ C+
Sbjct: 85  RIKDQASAYAVAGVEAEEIDRMNILHASKLAMKKAIEALHIPPGYVLVDGRD-EIDIVCR 143

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             AVI GD+    IAA SI+AKVTRDR+M   H  YP Y FD H GY T  H +++++ G
Sbjct: 144 QKAVIGGDAKCACIAAGSILAKVTRDRIMDDLHMLYPQYAFDKHKGYGTRLHFELLQKYG 203

Query: 193 PSCIHRLTFRPLRNLS 208
           P  IHR +F P++ L+
Sbjct: 204 PCPIHRYSFAPVKALA 219


>gi|312622766|ref|YP_004024379.1| ribonuclease h [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203233|gb|ADQ46560.1| Ribonuclease H [Caldicellulosiruptor kronotskyensis 2002]
          Length = 206

 Score =  259 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/197 (43%), Positives = 128/197 (64%), Gaps = 4/197 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           FE+E  +  +    + G+DE GRG LAGPV  AA+++D   I  G+ DSKK++ KKRE+L
Sbjct: 10  FEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREKL 69

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +E+I   +I  S++    + ID+ NI+ AT  A+ +A+ENL++ P   L+DG  IP +L 
Sbjct: 70  FEEIIKESIAYSVAMVDSKVIDEININNATFLAMKNAIENLKIEPDIVLVDGYKIP-NLS 128

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               A+IKGD  S SIA ASI+AKV+RDR +     KYP Y F+ H GY T +H +++++
Sbjct: 129 FNQRAIIKGDKKSYSIACASILAKVSRDRFIVEISSKYPLYKFEKHKGYGTKEHIEILQK 188

Query: 191 KGPSCIHRLTFRPLRNL 207
            GP  IHR++F  L+N+
Sbjct: 189 YGPCEIHRISF--LKNI 203


>gi|333011022|gb|EGK30441.1| ribonuclease HII family protein [Shigella flexneri K-272]
 gi|333021817|gb|EGK41066.1| ribonuclease HII family protein [Shigella flexneri K-227]
          Length = 198

 Score =  259 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 90/185 (48%), Positives = 113/185 (61%), Gaps = 2/185 (1%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81
           M  VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  LYE+I   A+  
Sbjct: 9   MQLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEEIKEKALSW 68

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           S+  A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  A AV+KGDS
Sbjct: 69  SLGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMAVVKGDS 127

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
               I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F
Sbjct: 128 RVPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSF 187

Query: 202 RPLRN 206
            P++ 
Sbjct: 188 GPVKR 192


>gi|167032173|ref|YP_001667404.1| ribonuclease HII [Pseudomonas putida GB-1]
 gi|189043642|sp|B0KSB3|RNH2_PSEPG RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166858661|gb|ABY97068.1| Ribonuclease H [Pseudomonas putida GB-1]
          Length = 207

 Score =  259 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 90/182 (49%), Positives = 116/182 (63%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  KRE L+++I   A+   I
Sbjct: 13  LVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEAKREALFDEICEKALSFCI 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI +AT+ A+  AVE L + P+ ALIDG   P+ L   A  V+KGDS  
Sbjct: 73  ARAEVEEIDRLNILQATMLAMQRAVEGLHITPKLALIDGNRCPK-LAVPASPVVKGDSQV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKVTRDR M      YP YG   H GYPT  H + +   GP+ IHR +F P
Sbjct: 132 PAIAAASILAKVTRDREMSAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 191

Query: 204 LR 205
           +R
Sbjct: 192 VR 193


>gi|291542667|emb|CBL15777.1| RNase HII [Ruminococcus bromii L2-63]
          Length = 201

 Score =  259 bits (663), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/192 (43%), Positives = 115/192 (59%), Gaps = 2/192 (1%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
             E E     +    + G+DE GRG LAGPV  AA+IL  N +  G+NDSKK+S KKRE 
Sbjct: 3   WLEYENKNIARGFLSICGVDEAGRGPLAGPVCAAAVILPENTVIEGVNDSKKLSEKKREA 62

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L++ I   A+  SI+ AS + I++ NI  A + A+  AVE L+     A+IDG  +P  L
Sbjct: 63  LFDVIKEQALAYSIAFASVEEIEEMNILNAAMLAMKRAVEGLEPRADYAMIDGNRMPP-L 121

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             +   ++KGD+ S+SIA ASI+AKV+RDRL+    K++P Y F  H GY T  H + I 
Sbjct: 122 SIEGECIVKGDAKSMSIACASILAKVSRDRLLYEYDKEFPQYLFAKHKGYGTKAHIEAIL 181

Query: 190 EKGPSCIHRLTF 201
           + GP   HR +F
Sbjct: 182 KYGPCKYHRPSF 193


>gi|254479478|ref|ZP_05092803.1| ribonuclease HII [Carboxydibrachium pacificum DSM 12653]
 gi|214034582|gb|EEB75331.1| ribonuclease HII [Carboxydibrachium pacificum DSM 12653]
          Length = 236

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/189 (44%), Positives = 114/189 (60%), Gaps = 2/189 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  + E+ +  +AG+DE GRG L GPVV A +IL        INDSKK+  +KRE+L E
Sbjct: 42  YEKKLYEEGLNFIAGVDEAGRGPLVGPVVAACVILPKEIFIPEINDSKKLPEEKREKLAE 101

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   AI   I     + ID+ NI  ATL A+  A+  ++      L+D  SIP D+P +
Sbjct: 102 VIKKEAISYGIGIVDCREIDEINILNATLKAMKKAIFEVKEKIEYLLVDAISIP-DMPIK 160

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              ++KGDS S+SIAAASI+AKV RDR+MR  HK YP Y F  + GY T +H + +K+ G
Sbjct: 161 QLPIVKGDSKSISIAAASILAKVERDRIMREYHKLYPQYNFAKNKGYGTKEHIEALKKHG 220

Query: 193 PSCIHRLTF 201
           P  IHR T+
Sbjct: 221 PCPIHRRTY 229


>gi|170723229|ref|YP_001750917.1| ribonuclease HII [Pseudomonas putida W619]
 gi|229564298|sp|B1JBP6|RNH2_PSEPW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|169761232|gb|ACA74548.1| Ribonuclease H [Pseudomonas putida W619]
          Length = 207

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 92/182 (50%), Positives = 117/182 (64%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  KRE L+++I + A+   I
Sbjct: 13  LVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEAKREALFDEICAKALSFCI 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI +AT+ A+  AVE L V P+ ALIDG   P+ L   A  VIKGDS  
Sbjct: 73  ARAEVEEIDRLNILQATMLAMQRAVEGLSVTPKLALIDGNRCPK-LSVPAAPVIKGDSQV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKVTRDR M      YP YG   H GYPT  H + +   GP+ IHR +F P
Sbjct: 132 PAIAAASILAKVTRDREMSAFELIYPGYGMGGHKGYPTPVHLEALARLGPTPIHRRSFAP 191

Query: 204 LR 205
           +R
Sbjct: 192 VR 193


>gi|160900366|ref|YP_001565948.1| ribonuclease HII [Delftia acidovorans SPH-1]
 gi|238687159|sp|A9BML8|RNH2_DELAS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|160365950|gb|ABX37563.1| Ribonuclease H [Delftia acidovorans SPH-1]
          Length = 235

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 91/182 (50%), Positives = 122/182 (67%), Gaps = 2/182 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82
             VAG+DE GRG LAGPVV AA+ILD  N   G+NDSKK++  +RE LY++I + A+  S
Sbjct: 23  GLVAGVDEAGRGPLAGPVVAAAVILDDLNPIEGLNDSKKLTAARREALYDEIRAKALCCS 82

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+ AS + ID+ NI +ATL A+  AV  L++ P   L+DG  +P  L  QA A++KGDS+
Sbjct: 83  IAEASVEEIDRLNILQATLLAMRRAVLGLRLKPVLVLVDGNQLPV-LDVQAEAIVKGDSL 141

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +I+AASI+AKVTRDR     H++YP+YGFD H GY TA H   ++  G    HR TF 
Sbjct: 142 VQAISAASILAKVTRDRWCERLHEQYPEYGFDGHKGYGTAAHLAALRLHGACEEHRRTFA 201

Query: 203 PL 204
           P+
Sbjct: 202 PV 203


>gi|306833475|ref|ZP_07466602.1| ribonuclease HII [Streptococcus bovis ATCC 700338]
 gi|304424245|gb|EFM27384.1| ribonuclease HII [Streptococcus bovis ATCC 700338]
          Length = 259

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/200 (42%), Positives = 122/200 (61%), Gaps = 6/200 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++    +AGIDEVGRG LAGPVV A +IL  N     +NDSKKI  K  EE+
Sbjct: 58  LRYEKELYQQGYQAIAGIDEVGRGPLAGPVVTACVILPKNCKIKHLNDSKKIPKKHHEEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127
           Y++I + A+ I I    +  ID+ NI++AT   +  A+  L+     P   LID   +  
Sbjct: 118 YQEILARALGIGIGIVDNNVIDQINIYEATKVGMLQAINQLKGEVTKPDYLLIDAMHLET 177

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +P Q+  ++KGD+ SLSIAAASI+AKVTRDR+M      YP Y F+ +VGY T +H + 
Sbjct: 178 SIPQQS--LLKGDANSLSIAAASIVAKVTRDRMMADYANDYPGYAFEKNVGYGTKEHLEG 235

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           +K+ G + IHR TF P++++
Sbjct: 236 LKKYGITPIHRKTFEPIKSM 255


>gi|253687351|ref|YP_003016541.1| Ribonuclease H [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|259494070|sp|C6DAJ7|RNH2_PECCP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|251753929|gb|ACT12005.1| Ribonuclease H [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 198

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/183 (46%), Positives = 114/183 (62%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP     G+ DSK++S K+R  LY++I   A+  S+
Sbjct: 12  CIAGVDEVGRGPLVGAVVTAAVILDPTRPIVGLADSKQLSEKRRLALYDEIKEKALAWSL 71

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID+ NI  AT+ A+  AV  L V+P   LIDG   P  LP  + AV+KGDS  
Sbjct: 72  GRAEPEEIDQLNILHATMLAMQRAVAGLAVVPDFVLIDGNRCPA-LPMPSQAVVKGDSRV 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M    +++P YGF  H GYPTA H + +   G +  HR +F P
Sbjct: 131 AEISAASIMAKVTRDREMVELDERFPAYGFAQHKGYPTAFHLEKLAALGATEFHRRSFAP 190

Query: 204 LRN 206
           ++ 
Sbjct: 191 VKR 193


>gi|331005976|ref|ZP_08329321.1| Ribonuclease HII [gamma proteobacterium IMCC1989]
 gi|330420221|gb|EGG94542.1| Ribonuclease HII [gamma proteobacterium IMCC1989]
          Length = 202

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/182 (47%), Positives = 117/182 (64%), Gaps = 2/182 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DEVGRG LAG VV AA+IL PN    G+NDSKK+S KKR+ L++ I   A+  SI+ 
Sbjct: 14  AGVDEVGRGPLAGDVVTAAVILGPNKPIEGLNDSKKLSEKKRDALFDIIKERALSWSIAR 73

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + ID+ NI +A+L A+  AV+ L + P    +DG  +P      A  VIKGDS   +
Sbjct: 74  CSVEDIDQINILQASLLAMKKAVDGLAITPEHVWVDGNKMPR-WNYTAETVIKGDSRVPA 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           IAAASI+AKVTRDR M    ++YP YGF +H GYPT  H   ++  G + IHR ++ P++
Sbjct: 133 IAAASILAKVTRDREMVAYEEQYPGYGFAAHKGYPTKVHIDALQRLGITPIHRRSYAPVK 192

Query: 206 NL 207
            +
Sbjct: 193 KI 194


>gi|323705455|ref|ZP_08117030.1| Ribonuclease H [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535357|gb|EGB25133.1| Ribonuclease H [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 252

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 84/189 (44%), Positives = 112/189 (59%), Gaps = 2/189 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +   +   + GIDEVGRG LAGPVV   +IL   +    I+DSKK+S  KRE L E
Sbjct: 58  YENELYNLDYKLIGGIDEVGRGPLAGPVVAGCVILPKQSFIPDIDDSKKLSESKRELLSE 117

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   AI   I    ++ ID+ NI  +T +A+  A+ NL +     L+D  +IP D+   
Sbjct: 118 IIKKKAIAYGIGIIDNEQIDRINILNSTYEAMKVAISNLNIKADFLLVDAITIP-DIDIA 176

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              +IKGD+ S+SIAAASI+AKVTRD +MR   + YP YGF  + GY T +H + IK+ G
Sbjct: 177 QIPIIKGDAKSISIAAASIVAKVTRDNIMRKYDEMYPQYGFCKNKGYGTKEHIEAIKKYG 236

Query: 193 PSCIHRLTF 201
           P  IHR TF
Sbjct: 237 PCPIHRKTF 245


>gi|152968777|ref|YP_001333886.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238893179|ref|YP_002917913.1| ribonuclease HII [Klebsiella pneumoniae NTUH-K2044]
 gi|262044746|ref|ZP_06017793.1| ribonuclease HII [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|330001662|ref|ZP_08304088.1| ribonuclease HII [Klebsiella sp. MS 92-3]
 gi|166225193|sp|A6T4Y5|RNH2_KLEP7 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|150953626|gb|ABR75656.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238545495|dbj|BAH61846.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259037896|gb|EEW39120.1| ribonuclease HII [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|328537604|gb|EGF63824.1| ribonuclease HII [Klebsiella sp. MS 92-3]
          Length = 199

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 87/183 (47%), Positives = 113/183 (61%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L+++I   A+  S+
Sbjct: 11  LVAGVDEVGRGPLVGAVVTAAVILDPAKPIVGLNDSKKLSEKRRLALFDEIKEKALCWSL 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID+ NI  AT+ A+  AV  L ++P   LIDG   P  LP  + AV+KGDS  
Sbjct: 71  GRAEPHEIDELNILHATMLAMQRAVAGLSIVPEFVLIDGNRCP-SLPMPSQAVVKGDSRV 129

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRD  M      +P YGF  H GYPTA H Q ++E G +  HR +F P
Sbjct: 130 AEISAASILAKVTRDAEMATLDLAFPHYGFAQHKGYPTAVHLQKLQEHGATEHHRRSFGP 189

Query: 204 LRN 206
           ++ 
Sbjct: 190 VKR 192


>gi|227114701|ref|ZP_03828357.1| ribonuclease HII [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 198

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 88/183 (48%), Positives = 114/183 (62%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++I   A+  S+
Sbjct: 12  CIAGVDEVGRGPLVGAVVTAAVILDPTRPIVGLADSKKLSEKRRLSLYDEIKEKALAWSL 71

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID+ NI  AT+ A+  AV  L V+P   LIDG   P  LP  A AV+KGDS  
Sbjct: 72  GRAEPEEIDQLNILHATMLAMQRAVAGLAVVPDFVLIDGNRCPA-LPMPAQAVVKGDSRV 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M    +++P YGF  H GYPTA H + +   G +  HR +F P
Sbjct: 131 AEISAASIMAKVTRDREMVELDQRFPAYGFAQHKGYPTAFHLEKLAALGATEFHRRSFAP 190

Query: 204 LRN 206
           +R 
Sbjct: 191 VRR 193


>gi|144899371|emb|CAM76235.1| Ribonuclease HII [Magnetospirillum gryphiswaldense MSR-1]
          Length = 201

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 97/205 (47%), Positives = 122/205 (59%), Gaps = 9/205 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKIS 64
            P   LE  +       VAGIDEVGRG LAGPVV AAII+DP  +P  +    +DSKK+S
Sbjct: 1   MPDLSLETALG----GMVAGIDEVGRGPLAGPVVAAAIIIDPATLPAELAAHLDDSKKLS 56

Query: 65  HKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
            KKRE L   I      +I+ AS + ID+ NI KAT  A+  AV+ L  +P  AL+DG  
Sbjct: 57  AKKREHLDILIRQHCRFAIAQASVEEIDRLNILKATFLAMARAVDGLGTVPDHALVDGNR 116

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
            P  LPC A  VI GD+ SLSIAAASIIAKV RDRLM      +P YG+ ++ GY T  H
Sbjct: 117 -PPPLPCPAHCVIGGDAKSLSIAAASIIAKVFRDRLMTALDLDFPGYGWAANAGYGTKAH 175

Query: 185 QQVIKEKGPSCIHRLTFRPLRNLSV 209
            + +K  GP+  HR +F P+    +
Sbjct: 176 MEALKRLGPTPHHRTSFAPVAQFQL 200


>gi|304404228|ref|ZP_07385890.1| Ribonuclease H [Paenibacillus curdlanolyticus YK9]
 gi|304347206|gb|EFM13038.1| Ribonuclease H [Paenibacillus curdlanolyticus YK9]
          Length = 206

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 91/192 (47%), Positives = 117/192 (60%), Gaps = 4/192 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            E E ++ E+    +AGIDEVGRG L G VV AA+IL P  +  G+NDSKK+S KKR EL
Sbjct: 2   LEYEKLLWEQGCSNIAGIDEVGRGCLFGDVVAAAVILPPGLVLDGVNDSKKLSEKKRNEL 61

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I   A+  SI+      ID+ NI +A+  A+  AV+ L V P   L+D   I  DLP
Sbjct: 62  YDIIIEHALYWSIARIDSDEIDRINIKQASRLAMKQAVQTLGVDPDHLLVDAEKIDLDLP 121

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLM-RIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
               A+IKGD+ S SIAAASI+AKVTRDRL        YP YG   H GY T  H++ + 
Sbjct: 122 --QQAIIKGDATSQSIAAASILAKVTRDRLCTTEWESLYPGYGIAIHKGYATKLHREKLL 179

Query: 190 EKGPSCIHRLTF 201
           E GP+ +HR +F
Sbjct: 180 ELGPTPLHRKSF 191


>gi|299134668|ref|ZP_07027860.1| Ribonuclease H [Afipia sp. 1NLS2]
 gi|298590478|gb|EFI50681.1| Ribonuclease H [Afipia sp. 1NLS2]
          Length = 254

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 96/196 (48%), Positives = 134/196 (68%), Gaps = 1/196 (0%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           RP F  E  + ++ +WPVAG DEVGRG LAGPVV AA+ILDP+ IP GI+DSK+++ + R
Sbjct: 24  RPSFRRERALLKQGIWPVAGCDEVGRGPLAGPVVAAAVILDPDRIPKGIDDSKRLTVEAR 83

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           E L+E+I ++A++S+++A    ID+ NI +A+L A+  AV+ L   PR   +DGR    D
Sbjct: 84  EALFEEICATAMVSVAAAPPWRIDRDNILRASLWALARAVQGLPQAPRHVFVDGRD-RID 142

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           +PC    VI GD + LSI AASI+AKVTRDRLM    + +P+YGFDSH+GY   +H   +
Sbjct: 143 VPCGCEPVIGGDGLLLSIGAASIVAKVTRDRLMCRLARVHPEYGFDSHMGYGVPRHLAAL 202

Query: 189 KEKGPSCIHRLTFRPL 204
           +  GP+  HR  F P+
Sbjct: 203 ELHGPTPHHRRYFAPV 218


>gi|261822585|ref|YP_003260691.1| ribonuclease HII [Pectobacterium wasabiae WPP163]
 gi|261606598|gb|ACX89084.1| Ribonuclease H [Pectobacterium wasabiae WPP163]
          Length = 198

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/183 (46%), Positives = 115/183 (62%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++I   A+  S+
Sbjct: 12  CIAGVDEVGRGPLVGAVVTAAVILDPTRPIVGLADSKKLSEKRRLALYDEINEKALAWSL 71

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID+ NI  AT+ A+  AV  L ++P   LIDG   P  LP +A AV+KGDS  
Sbjct: 72  GRAEPEEIDQLNILHATMLAMQRAVAGLSIVPDFVLIDGNRCPA-LPMRAQAVVKGDSRV 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M    +++P YGF  H GYPTA H + +   G +  HR +F P
Sbjct: 131 AEISAASIMAKVTRDREMVELDQRFPAYGFAQHKGYPTAFHLEKLAALGATEFHRRSFAP 190

Query: 204 LRN 206
           ++ 
Sbjct: 191 VKR 193


>gi|332307491|ref|YP_004435342.1| Ribonuclease H [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174820|gb|AEE24074.1| Ribonuclease H [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 197

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/183 (46%), Positives = 118/183 (64%), Gaps = 2/183 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             +AG+DEVGRG L G VV AA+ILDP+    G+ DSKKIS KKR  L++ I  +A+ +S
Sbjct: 3   QLIAGVDEVGRGPLVGDVVTAAVILDPSKPIAGLADSKKISEKKRLALFDLIMQNALSVS 62

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  AS + ID+ NI  AT+ A+  AV+ L   P    +DG   P+     + AV+KGDS+
Sbjct: 63  VGRASPEEIDELNILHATMLAMTRAVQGLATQPTFVRVDGNRCPK-WNYASEAVVKGDSL 121

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASIIAKVTRD  M   H+KYP+YGF  H GYPT  H + + E GP   +R++F+
Sbjct: 122 YAEISAASIIAKVTRDAEMTALHEKYPEYGFGQHKGYPTKAHLEKLAEFGPLPEYRMSFK 181

Query: 203 PLR 205
           P++
Sbjct: 182 PVQ 184


>gi|310658877|ref|YP_003936598.1| ribonuclease hii (rnase hii) [Clostridium sticklandii DSM 519]
 gi|308825655|emb|CBH21693.1| Ribonuclease HII (RNase HII) [Clostridium sticklandii]
          Length = 256

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/197 (41%), Positives = 120/197 (60%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F +E  +  +    + G+DE GRG LAGPVV A +ILD N +  GI+DSKK+S K R+ +
Sbjct: 61  FIIEETLFAEGYKKIGGVDEAGRGPLAGPVVSACVILDKNPMIDGIDDSKKVSEKNRDRI 120

Query: 72  YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ I +S II  I  +    ID++NI  AT  A+  ++      P   ++DG     D+ 
Sbjct: 121 FDTIVNSDIIYGIGISDSNEIDEYNILNATFLAMKRSIAMASQRPDFIIVDGNQQITDIN 180

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +++GDS S+SIA ASI+AKVTRD++M+   + YP YGFD H GY T +H + I +
Sbjct: 181 HPQRCIVQGDSKSISIACASILAKVTRDKIMKQYAEIYPQYGFDKHKGYGTKEHIEAINK 240

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHRL+F  L+N+
Sbjct: 241 YGITPIHRLSF--LKNI 255


>gi|76787278|ref|YP_329728.1| ribonuclease HII [Streptococcus agalactiae A909]
 gi|77406999|ref|ZP_00784013.1| ribonuclease HII [Streptococcus agalactiae H36B]
 gi|97189340|sp|Q3K175|RNH2_STRA1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|76562335|gb|ABA44919.1| ribonuclease HII [Streptococcus agalactiae A909]
 gi|77174385|gb|EAO77240.1| ribonuclease HII [Streptococcus agalactiae H36B]
          Length = 253

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 91/209 (43%), Positives = 128/209 (61%), Gaps = 7/209 (3%)

Query: 4   NSIPERPHFE----LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIND 59
           + + E    E     E  +  +++  +AGIDEVGRG LAGPVV AA+IL PN     +ND
Sbjct: 46  SDLDEEARLEQMLVYEKKLYIEHINLIAGIDEVGRGPLAGPVVAAAVILPPNCKIKHLND 105

Query: 60  SKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118
           SKKI  KK +E+Y+ I   A+ + I     Q ID  NI++AT  A+  AV +L V+P   
Sbjct: 106 SKKIPKKKHQEIYQNILDQALAVGIGIQDSQCIDDINIYEATKHAMIDAVSHLSVVPEHL 165

Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
           LID   +  DLP     +IKGD+ SLSIAAASI+AKVTRD++M     KYP Y F  + G
Sbjct: 166 LIDAMVL--DLPIPQTKIIKGDANSLSIAAASIVAKVTRDKIMSDYDSKYPGYAFSKNAG 223

Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           Y T +H + +++ G + IHR +F P++++
Sbjct: 224 YGTKEHLEGLQKYGITPIHRKSFEPIKSM 252


>gi|312127966|ref|YP_003992840.1| ribonuclease h [Caldicellulosiruptor hydrothermalis 108]
 gi|311777985|gb|ADQ07471.1| Ribonuclease H [Caldicellulosiruptor hydrothermalis 108]
          Length = 206

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/197 (43%), Positives = 128/197 (64%), Gaps = 4/197 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           FE+E  +  +    + G+DE GRG LAGPV  AA+++D   I  G+ DSKK++ KKRE+L
Sbjct: 10  FEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREKL 69

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +E+I   +I  S++    + ID+ NI+ AT  A+ +A+ENL++ P   L+DG  IP +L 
Sbjct: 70  FEEIIKESIAYSVAMVDSKIIDEININNATFLAMKNAIENLKIEPDIVLVDGYEIP-NLG 128

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               A+IKGD  S SIA ASI+AKV+RDR +     KYP Y F+ H GY T +H +++++
Sbjct: 129 FNQRAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPLYKFEKHKGYGTKEHIEILQK 188

Query: 191 KGPSCIHRLTFRPLRNL 207
            GP  IHR++F  L+N+
Sbjct: 189 YGPCEIHRISF--LKNI 203


>gi|238754793|ref|ZP_04616144.1| Ribonuclease HII [Yersinia ruckeri ATCC 29473]
 gi|238706953|gb|EEP99319.1| Ribonuclease HII [Yersinia ruckeri ATCC 29473]
          Length = 187

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/183 (46%), Positives = 112/183 (61%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++I   A+  S+ 
Sbjct: 2   IAGVDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEIIEKALSWSLG 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI  AT+ A+  AV  L + P   LIDG   P  LP  + AV+KGDS   
Sbjct: 62  RAEPAEIDELNILHATMLAMQRAVAGLHIAPDYVLIDGNRCPA-LPMPSLAVVKGDSRVA 120

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRDR M      +P YGF  H GYPTA H + +   G +  HR +F P+
Sbjct: 121 EISAASIVAKVTRDREMAELDSYFPGYGFAQHKGYPTALHLERLAALGATEHHRRSFSPV 180

Query: 205 RNL 207
           +N+
Sbjct: 181 KNV 183


>gi|330959804|gb|EGH60064.1| putative ribonuclease HII [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 208

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 89/184 (48%), Positives = 118/184 (64%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP++   G+NDSKK+S KKR+ LY +I   A+  SI
Sbjct: 13  VVAGVDEVGRGPLCGDVVTAAVILDPSHPIQGLNDSKKLSEKKRDLLYAEICEKAVAWSI 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A+   ID+ NI +AT+ A+  AV+ L V P   L+DG   P  LP +A A+IKGD + 
Sbjct: 73  GRATVDEIDQLNILQATMLAMQRAVQGLSVTPTLVLVDGNRCP-SLPMRAEAIIKGDGLI 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AAS++AKV RDR M+ A   YP YG   H GYP+  H + +   G + IHR TF P
Sbjct: 132 AEISAASVLAKVVRDREMQSADLLYPGYGIAGHKGYPSPVHLEALSRLGATAIHRKTFGP 191

Query: 204 LRNL 207
           +R +
Sbjct: 192 VRKI 195


>gi|302187912|ref|ZP_07264585.1| ribonuclease HII [Pseudomonas syringae pv. syringae 642]
          Length = 218

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 88/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE+LY +I   A+   I
Sbjct: 14  LVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLYVEIQEKALCWFI 73

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI  AT+ A+  AVE L + P+ ALIDG   P+ L   +  V+KGDS  
Sbjct: 74  ARAEVEEIDQLNILHATMLAMQRAVEGLSITPKLALIDGNRCPQ-LSVPSAPVVKGDSKV 132

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P
Sbjct: 133 PAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 192

Query: 204 LR 205
           +R
Sbjct: 193 VR 194


>gi|323351561|ref|ZP_08087215.1| ribonuclease HII [Streptococcus sanguinis VMC66]
 gi|322122047|gb|EFX93773.1| ribonuclease HII [Streptococcus sanguinis VMC66]
          Length = 254

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/197 (43%), Positives = 122/197 (61%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +     +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  KK +E+
Sbjct: 58  LRYEKELYKTGFRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ +   A+ + I    ++ ID+ NI++AT  A+  A+  L + P   LID   +  D+ 
Sbjct: 118 YQAVLDKALAVGIGLIDNEIIDQVNIYEATKLAMKDALSKLCLKPDYLLIDAMKL--DVE 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD+LM    KK+P Y F  + GY T +H Q ++ 
Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMTDYDKKFPGYDFSQNAGYGTMRHLQGLER 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR TF P++++
Sbjct: 236 NGVTPIHRKTFEPIKSM 252


>gi|24111618|ref|NP_706128.1| ribonuclease HII [Shigella flexneri 2a str. 301]
 gi|30061740|ref|NP_835911.1| ribonuclease HII [Shigella flexneri 2a str. 2457T]
 gi|82775573|ref|YP_401920.1| ribonuclease HII [Shigella dysenteriae Sd197]
 gi|110804235|ref|YP_687755.1| ribonuclease HII [Shigella flexneri 5 str. 8401]
 gi|309787143|ref|ZP_07681755.1| ribonuclease HII family protein [Shigella dysenteriae 1617]
 gi|39932374|sp|Q83MN1|RNH2_SHIFL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|97189271|sp|Q32JS6|RNH2_SHIDS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|123147263|sp|Q0T826|RNH2_SHIF8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|24050387|gb|AAN41835.1| RNAse HII [Shigella flexneri 2a str. 301]
 gi|30039982|gb|AAP15716.1| RNAse HII [Shigella flexneri 2a str. 2457T]
 gi|81239721|gb|ABB60431.1| RNAse HII [Shigella dysenteriae Sd197]
 gi|110613783|gb|ABF02450.1| RNAse HII [Shigella flexneri 5 str. 8401]
 gi|281599538|gb|ADA72522.1| Ribonuclease HII [Shigella flexneri 2002017]
 gi|308924721|gb|EFP70216.1| ribonuclease HII family protein [Shigella dysenteriae 1617]
 gi|313646756|gb|EFS11215.1| ribonuclease HII family protein [Shigella flexneri 2a str. 2457T]
 gi|332762020|gb|EGJ92291.1| ribonuclease HII family protein [Shigella flexneri 2747-71]
 gi|332762187|gb|EGJ92456.1| ribonuclease HII family protein [Shigella flexneri 4343-70]
 gi|332765032|gb|EGJ95260.1| ribonuclease HII family protein [Shigella flexneri K-671]
 gi|332768686|gb|EGJ98866.1| ribonuclease HII family protein [Shigella flexneri 2930-71]
 gi|333009387|gb|EGK28843.1| ribonuclease HII family protein [Shigella flexneri K-218]
 gi|333010678|gb|EGK30111.1| ribonuclease HII family protein [Shigella flexneri VA-6]
 gi|333022198|gb|EGK41437.1| ribonuclease HII family protein [Shigella flexneri K-304]
          Length = 198

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 89/184 (48%), Positives = 112/184 (60%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  LYE+I   A+  S
Sbjct: 10  QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEEIKEKALSWS 69

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  A AV+KGDS 
Sbjct: 70  LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMAVVKGDSR 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F 
Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFG 188

Query: 203 PLRN 206
           P++ 
Sbjct: 189 PVKR 192


>gi|160880532|ref|YP_001559500.1| ribonuclease H [Clostridium phytofermentans ISDg]
 gi|189043586|sp|A9KLL7|RNH2_CLOPH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|160429198|gb|ABX42761.1| Ribonuclease H [Clostridium phytofermentans ISDg]
          Length = 254

 Score =  258 bits (661), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 92/195 (47%), Positives = 126/195 (64%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +   +   + GIDEVGRG LAGPV+  A+IL  +     INDSK++S KKRE LY++
Sbjct: 61  EYELSYPDYRYICGIDEVGRGPLAGPVIACAVILPKDCEILYINDSKQLSEKKREALYDE 120

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI + I SASH  I++ NI +AT +A+  A+  L V+P   L D  +IP+ +    
Sbjct: 121 IMEKAISVGIGSASHARIEEINILQATYEAMRGAINKLGVVPELLLNDAVTIPKVV-IPQ 179

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGD+ S+SIAAASI+AKVTRDRLM      +P YGF S+ GY +A H + +KE GP
Sbjct: 180 VPIIKGDAKSISIAAASIVAKVTRDRLMVEYDTVFPGYGFASNKGYGSADHIKALKELGP 239

Query: 194 SCIHRLTFRPLRNLS 208
           S IHR +F  ++NL+
Sbjct: 240 SPIHRASF--IKNLT 252


>gi|260583825|ref|ZP_05851573.1| ribonuclease HII [Granulicatella elegans ATCC 700633]
 gi|260158451|gb|EEW93519.1| ribonuclease HII [Granulicatella elegans ATCC 700633]
          Length = 257

 Score =  258 bits (661), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/194 (44%), Positives = 118/194 (60%), Gaps = 3/194 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E +  ++    +AG+DEVGRG LAGPVV AA+IL  N    G +DSKK+S  KREE+Y 
Sbjct: 63  YEILAYQEGASFIAGVDEVGRGPLAGPVVAAAVILPKNIEDLGFDDSKKLSASKREEIYR 122

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   AI I I       ID+ NI++A+  A+  AV  L++ P   LID   I  D+   
Sbjct: 123 LIQEKAIAIGIGIVDADIIDQVNIYQASRLAMQQAVSELKIQPDYLLIDAMKI--DVNTP 180

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              +IKGD+ S+SIAAASI+AK  RD++M+   + YP Y F ++ GY T KH + +K KG
Sbjct: 181 QIGIIKGDAKSISIAAASIVAKQVRDQMMQEFDELYPGYDFSNNAGYGTPKHLEGLKSKG 240

Query: 193 PSCIHRLTFRPLRN 206
              IHR TF P+++
Sbjct: 241 ICPIHRKTFAPIKD 254


>gi|157147385|ref|YP_001454704.1| ribonuclease HII [Citrobacter koseri ATCC BAA-895]
 gi|166225182|sp|A8ALA5|RNH2_CITK8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157084590|gb|ABV14268.1| hypothetical protein CKO_03183 [Citrobacter koseri ATCC BAA-895]
          Length = 198

 Score =  258 bits (661), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 88/184 (47%), Positives = 110/184 (59%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  LY++I   A+  S
Sbjct: 10  QLVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALYDEIKEKALSWS 69

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A    ID+ NI  AT+ A+  AV  L + P   LIDG   P  LP  + AV+KGDS 
Sbjct: 70  LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPA-LPVPSMAVVKGDSR 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASIIAKVTRD  M      +P YGF  H GYPTA H   + E G +  HR +F 
Sbjct: 129 VAEISAASIIAKVTRDAEMAALDGIFPQYGFAQHKGYPTAFHLAALAEHGATEHHRRSFA 188

Query: 203 PLRN 206
           P++ 
Sbjct: 189 PVKR 192


>gi|325278078|ref|ZP_08143597.1| ribonuclease HII [Pseudomonas sp. TJI-51]
 gi|324096785|gb|EGB95112.1| ribonuclease HII [Pseudomonas sp. TJI-51]
          Length = 207

 Score =  258 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 90/182 (49%), Positives = 116/182 (63%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  KRE L+++I   A+   I
Sbjct: 13  LVAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTQAKREALFDEICEKALSFCI 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI +AT+ A+  AVE L V P+ ALIDG   P+ L   A  V+KGDS  
Sbjct: 73  ARAEVEEIDRLNILQATMLAMQRAVEGLHVTPKLALIDGNRCPK-LSVPAAPVVKGDSQV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P
Sbjct: 132 PAIAAASILAKVSRDREMSAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 191

Query: 204 LR 205
           +R
Sbjct: 192 VR 193


>gi|227529208|ref|ZP_03959257.1| ribonuclease H [Lactobacillus vaginalis ATCC 49540]
 gi|227350883|gb|EEJ41174.1| ribonuclease H [Lactobacillus vaginalis ATCC 49540]
          Length = 260

 Score =  258 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 82/195 (42%), Positives = 117/195 (60%), Gaps = 2/195 (1%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F+ E    ++    VAG+DEVGRG LAGPVV  A+IL P     G+ DSK+++  +RE 
Sbjct: 62  RFKFEKQYWQQGCQYVAGMDEVGRGPLAGPVVTCAVILSPEFDLIGVTDSKQLTRHEREN 121

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY +I + AI +SI+    Q ID+ NI+ AT +A+  +V  L   P S ++D   +P  L
Sbjct: 122 LYLQIVNEAIEVSIAVNDSQKIDQLNIYAATQNAMMTSVRQLHHQPESLIVDAVPLPA-L 180

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                 +IKGD  S+S+AAASI+AK  RD LMR   + YP Y F  ++GY T KH   ++
Sbjct: 181 DIPQTTLIKGDQKSISVAAASIVAKEYRDHLMRDYDRIYPGYDFAENMGYGTKKHLAGLR 240

Query: 190 EKGPSCIHRLTFRPL 204
           + G + IHR +F P+
Sbjct: 241 KLGATPIHRRSFNPV 255


>gi|157372011|ref|YP_001480000.1| ribonuclease HII [Serratia proteamaculans 568]
 gi|166991070|sp|A8GID2|RNH2_SERP5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157323775|gb|ABV42872.1| Ribonuclease H [Serratia proteamaculans 568]
          Length = 197

 Score =  258 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 87/184 (47%), Positives = 116/184 (63%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++I   A+  S+
Sbjct: 12  LIAGVDEVGRGPLVGAVVTAAVILDPARPIVGLADSKKLSEKRRLALYDEIVEKALSWSL 71

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP ++ AV+KGDS  
Sbjct: 72  GRAEPDEIDQLNILHATMLAMQRAVAGLHIAPDMVLIDGNRCPK-LPMRSQAVVKGDSRV 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M    +++PDYGF  H GYPTA H + +   G +  HR +F P
Sbjct: 131 AEISAASILAKVTRDREMTELDREFPDYGFAQHKGYPTAFHLERLAALGATEHHRRSFAP 190

Query: 204 LRNL 207
           +R +
Sbjct: 191 VRRV 194


>gi|28868754|ref|NP_791373.1| ribonuclease HII [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213969132|ref|ZP_03397271.1| ribonuclease HII [Pseudomonas syringae pv. tomato T1]
 gi|301383973|ref|ZP_07232391.1| ribonuclease HII [Pseudomonas syringae pv. tomato Max13]
 gi|302064141|ref|ZP_07255682.1| ribonuclease HII [Pseudomonas syringae pv. tomato K40]
 gi|302134068|ref|ZP_07260058.1| ribonuclease HII [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|37999586|sp|Q886M9|RNH2_PSESM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|28851993|gb|AAO55068.1| ribonuclease HII [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926130|gb|EEB59686.1| ribonuclease HII [Pseudomonas syringae pv. tomato T1]
 gi|331016381|gb|EGH96437.1| ribonuclease HII [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 217

 Score =  258 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 88/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  KRE+L+ +I   A+   I
Sbjct: 13  LVAGVDEVGRGPLCGAVVTAAVILDPAKPILGLNDSKKLTEAKREKLFVEIQEKALCWFI 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI  AT+ A+  AVE L + P+ ALIDG   P+ L   +  V+KGDS  
Sbjct: 73  ARAEVEEIDQLNILHATMLAMKRAVEGLSITPKLALIDGNRCPQ-LSVPSAPVVKGDSKV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P
Sbjct: 132 PAIAAASILAKVSRDREMAALELIYPGYGIAGHKGYPTPVHLEALARLGPTPIHRRSFGP 191

Query: 204 LR 205
           +R
Sbjct: 192 VR 193


>gi|16128176|ref|NP_414725.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           str. K-12 substr. MG1655]
 gi|74310803|ref|YP_309222.1| ribonuclease HII [Shigella sonnei Ss046]
 gi|89107063|ref|AP_000843.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           str. K-12 substr. W3110]
 gi|157157454|ref|YP_001461352.1| ribonuclease HII [Escherichia coli E24377A]
 gi|157159648|ref|YP_001456966.1| ribonuclease HII [Escherichia coli HS]
 gi|170079819|ref|YP_001729139.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188492814|ref|ZP_03000084.1| ribonuclease HII [Escherichia coli 53638]
 gi|191167029|ref|ZP_03028851.1| ribonuclease HII [Escherichia coli B7A]
 gi|193063198|ref|ZP_03044289.1| ribonuclease HII [Escherichia coli E22]
 gi|193067763|ref|ZP_03048730.1| ribonuclease HII [Escherichia coli E110019]
 gi|194428257|ref|ZP_03060799.1| ribonuclease HII [Escherichia coli B171]
 gi|209917373|ref|YP_002291457.1| ribonuclease HII [Escherichia coli SE11]
 gi|218552764|ref|YP_002385677.1| ribonuclease HII [Escherichia coli IAI1]
 gi|218693648|ref|YP_002401315.1| ribonuclease HII [Escherichia coli 55989]
 gi|238899581|ref|YP_002925377.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           BW2952]
 gi|254037602|ref|ZP_04871679.1| ribonuclease HII [Escherichia sp. 1_1_43]
 gi|256021615|ref|ZP_05435480.1| ribonuclease HII [Shigella sp. D9]
 gi|256025495|ref|ZP_05439360.1| ribonuclease HII [Escherichia sp. 4_1_40B]
 gi|260842415|ref|YP_003220193.1| ribonuclease HII [Escherichia coli O103:H2 str. 12009]
 gi|260853393|ref|YP_003227284.1| ribonuclease HII [Escherichia coli O26:H11 str. 11368]
 gi|260866332|ref|YP_003232734.1| ribonuclease HII [Escherichia coli O111:H- str. 11128]
 gi|293476840|ref|ZP_06665248.1| ribonuclease HII [Escherichia coli B088]
 gi|300816223|ref|ZP_07096446.1| ribonuclease HII [Escherichia coli MS 107-1]
 gi|300824094|ref|ZP_07104214.1| ribonuclease HII [Escherichia coli MS 119-7]
 gi|300923025|ref|ZP_07139092.1| ribonuclease HII [Escherichia coli MS 182-1]
 gi|300949785|ref|ZP_07163759.1| ribonuclease HII [Escherichia coli MS 116-1]
 gi|300956066|ref|ZP_07168391.1| ribonuclease HII [Escherichia coli MS 175-1]
 gi|301028676|ref|ZP_07191897.1| ribonuclease HII [Escherichia coli MS 196-1]
 gi|301330019|ref|ZP_07222703.1| ribonuclease HII [Escherichia coli MS 78-1]
 gi|301646506|ref|ZP_07246381.1| ribonuclease HII [Escherichia coli MS 146-1]
 gi|307136783|ref|ZP_07496139.1| ribonuclease HII [Escherichia coli H736]
 gi|307311369|ref|ZP_07591011.1| Ribonuclease H [Escherichia coli W]
 gi|331640637|ref|ZP_08341785.1| ribonuclease HII [Escherichia coli H736]
 gi|331666424|ref|ZP_08367305.1| ribonuclease HII [Escherichia coli TA271]
 gi|331680762|ref|ZP_08381421.1| ribonuclease HII [Escherichia coli H591]
 gi|332282857|ref|ZP_08395270.1| ribonuclease HII degrades RNA of DNA-RNA hybrids [Shigella sp. D9]
 gi|2507334|sp|P10442|RNH2_ECOLI RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|97189278|sp|Q3Z5H5|RNH2_SHISS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166991065|sp|A7ZHS3|RNH2_ECO24 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166991066|sp|A7ZWC9|RNH2_ECOHS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|226736819|sp|B7M1Y6|RNH2_ECO8A RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|229564284|sp|B1XD52|RNH2_ECODH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238056777|sp|B6HZF7|RNH2_ECOSE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807975|sp|B7LGP5|RNH2_ECO55 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|259494063|sp|C4ZRS5|RNH2_ECOBW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|1552760|gb|AAB08612.1| ribonuclease HII [Escherichia coli]
 gi|1786380|gb|AAC73294.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           str. K-12 substr. MG1655]
 gi|73854280|gb|AAZ86987.1| RNAse HII [Shigella sonnei Ss046]
 gi|85674372|dbj|BAA77858.2| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           str. K12 substr. W3110]
 gi|157065328|gb|ABV04583.1| ribonuclease HII [Escherichia coli HS]
 gi|157079484|gb|ABV19192.1| ribonuclease HII [Escherichia coli E24377A]
 gi|169887654|gb|ACB01361.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188488013|gb|EDU63116.1| ribonuclease HII [Escherichia coli 53638]
 gi|190902922|gb|EDV62649.1| ribonuclease HII [Escherichia coli B7A]
 gi|192931106|gb|EDV83709.1| ribonuclease HII [Escherichia coli E22]
 gi|192959175|gb|EDV89611.1| ribonuclease HII [Escherichia coli E110019]
 gi|194413632|gb|EDX29912.1| ribonuclease HII [Escherichia coli B171]
 gi|209910632|dbj|BAG75706.1| ribonuclease HII [Escherichia coli SE11]
 gi|218350380|emb|CAU96063.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           55989]
 gi|218359532|emb|CAQ97070.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           IAI1]
 gi|226840708|gb|EEH72710.1| ribonuclease HII [Escherichia sp. 1_1_43]
 gi|238863470|gb|ACR65468.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           BW2952]
 gi|257752042|dbj|BAI23544.1| ribonuclease HII [Escherichia coli O26:H11 str. 11368]
 gi|257757562|dbj|BAI29059.1| ribonuclease HII [Escherichia coli O103:H2 str. 12009]
 gi|257762688|dbj|BAI34183.1| ribonuclease HII [Escherichia coli O111:H- str. 11128]
 gi|260450614|gb|ACX41036.1| Ribonuclease H [Escherichia coli DH1]
 gi|291321293|gb|EFE60735.1| ribonuclease HII [Escherichia coli B088]
 gi|299878308|gb|EFI86519.1| ribonuclease HII [Escherichia coli MS 196-1]
 gi|300317096|gb|EFJ66880.1| ribonuclease HII [Escherichia coli MS 175-1]
 gi|300420652|gb|EFK03963.1| ribonuclease HII [Escherichia coli MS 182-1]
 gi|300450817|gb|EFK14437.1| ribonuclease HII [Escherichia coli MS 116-1]
 gi|300523371|gb|EFK44440.1| ribonuclease HII [Escherichia coli MS 119-7]
 gi|300531430|gb|EFK52492.1| ribonuclease HII [Escherichia coli MS 107-1]
 gi|300843930|gb|EFK71690.1| ribonuclease HII [Escherichia coli MS 78-1]
 gi|301075292|gb|EFK90098.1| ribonuclease HII [Escherichia coli MS 146-1]
 gi|306908348|gb|EFN38846.1| Ribonuclease H [Escherichia coli W]
 gi|315059401|gb|ADT73728.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           W]
 gi|315134873|dbj|BAJ42032.1| ribonuclease HII [Escherichia coli DH1]
 gi|315616332|gb|EFU96950.1| ribonuclease HII family protein [Escherichia coli 3431]
 gi|320200291|gb|EFW74877.1| Ribonuclease HII [Escherichia coli EC4100B]
 gi|323157980|gb|EFZ44082.1| ribonuclease HII family protein [Escherichia coli EPECa14]
 gi|323160197|gb|EFZ46156.1| ribonuclease HII family protein [Escherichia coli E128010]
 gi|323165884|gb|EFZ51666.1| ribonuclease HII family protein [Shigella sonnei 53G]
 gi|323170975|gb|EFZ56624.1| ribonuclease HII family protein [Escherichia coli LT-68]
 gi|323176498|gb|EFZ62090.1| ribonuclease HII family protein [Escherichia coli 1180]
 gi|323181691|gb|EFZ67105.1| ribonuclease HII family protein [Escherichia coli 1357]
 gi|323380040|gb|ADX52308.1| Ribonuclease H [Escherichia coli KO11]
 gi|323939941|gb|EGB36139.1| ribonuclease HII [Escherichia coli E482]
 gi|323945660|gb|EGB41709.1| ribonuclease HII [Escherichia coli H120]
 gi|323970662|gb|EGB65918.1| ribonuclease HII [Escherichia coli TA007]
 gi|324017810|gb|EGB87029.1| ribonuclease HII [Escherichia coli MS 117-3]
 gi|324118303|gb|EGC12198.1| ribonuclease HII [Escherichia coli E1167]
 gi|331040383|gb|EGI12590.1| ribonuclease HII [Escherichia coli H736]
 gi|331066635|gb|EGI38512.1| ribonuclease HII [Escherichia coli TA271]
 gi|331072225|gb|EGI43561.1| ribonuclease HII [Escherichia coli H591]
 gi|332105209|gb|EGJ08555.1| ribonuclease HII degrades RNA of DNA-RNA hybrids [Shigella sp. D9]
 gi|332341516|gb|AEE54850.1| ribonuclease HII RnhB [Escherichia coli UMNK88]
          Length = 198

 Score =  258 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 89/184 (48%), Positives = 112/184 (60%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  LYE+I   A+  S
Sbjct: 10  QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEEIKEKALSWS 69

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  A AV+KGDS 
Sbjct: 70  LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMAVVKGDSR 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F 
Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFG 188

Query: 203 PLRN 206
           P++ 
Sbjct: 189 PVKR 192


>gi|238853072|ref|ZP_04643464.1| ribonuclease HII [Lactobacillus gasseri 202-4]
 gi|238834320|gb|EEQ26565.1| ribonuclease HII [Lactobacillus gasseri 202-4]
          Length = 250

 Score =  258 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 89/197 (45%), Positives = 128/197 (64%), Gaps = 4/197 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E    +K+   VAG+DEVGRG LAGPVV AA+IL  N     +NDSKK+S KKR+E
Sbjct: 54  RFSYEKKFGQKS-QLVAGVDEVGRGPLAGPVVTAAVILPHNFDLIDVNDSKKLSPKKRKE 112

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L+ KI + A+ +S+  A++  ID+ NI++A   A+ HAV+ L+V P + L+D  ++P ++
Sbjct: 113 LFPKILAKAVSVSVGLANNDVIDRINIYEADRLAMAHAVQGLKVKPDALLVDAMNVPLNI 172

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +I GD+ S SIAAASI+AKV RD LM    + YP+Y F  + GY T +H + +K
Sbjct: 173 P--QVKLIHGDAKSNSIAAASIVAKVFRDNLMDAYGEVYPEYDFKHNAGYGTREHMEALK 230

Query: 190 EKGPSCIHRLTFRPLRN 206
           + GP+ IHR +F P+  
Sbjct: 231 KYGPTPIHRRSFAPVSE 247


>gi|293408275|ref|ZP_06652115.1| ribonuclease HII [Escherichia coli B354]
 gi|331671689|ref|ZP_08372487.1| ribonuclease HII [Escherichia coli TA280]
 gi|291472526|gb|EFF15008.1| ribonuclease HII [Escherichia coli B354]
 gi|331071534|gb|EGI42891.1| ribonuclease HII [Escherichia coli TA280]
          Length = 198

 Score =  258 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 87/184 (47%), Positives = 112/184 (60%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG L G VV AA+ILDP+    G+NDSKK+S K+R  L E+I   A+  S
Sbjct: 10  QLVAGVDEVGRGPLVGAVVTAAVILDPSRPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  + AV+KGDS 
Sbjct: 70  LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSR 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F 
Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFG 188

Query: 203 PLRN 206
           P++ 
Sbjct: 189 PVKR 192


>gi|121601736|ref|YP_988707.1| ribonuclease HII [Bartonella bacilliformis KC583]
 gi|166225170|sp|A1URV4|RNH2_BARBK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|120613913|gb|ABM44514.1| ribonuclease HII [Bartonella bacilliformis KC583]
          Length = 222

 Score =  258 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 100/208 (48%), Positives = 137/208 (65%), Gaps = 2/208 (0%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           +  + +P +P+F  E  ++ +  + +AG+DEVGRG LAGPVV AA+IL  ++   G+NDS
Sbjct: 9   LNMSDLPPQPNFSYELDLQNQGFFHIAGVDEVGRGPLAGPVVTAAVILSKDHSLDGLNDS 68

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           KK+S +KR  LY +I  SA+ ISI+S   + ID+ +I KATL+A+   V  L V    AL
Sbjct: 69  KKLSVQKRNRLYCEILQSALAISIASICARAIDQSDIRKATLEAMRRCVMGLAVPAHYAL 128

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           IDGR IP  LPC A A++KGD  S+SIAAASI+AKVTRDR+M  A + Y  YG + HVGY
Sbjct: 129 IDGRDIPPHLPCPAKALVKGDQRSVSIAAASIVAKVTRDRMMEHAGQVYQGYGLEKHVGY 188

Query: 180 PTAKHQQVIKEKGP-SCIHRLTFRPLRN 206
            T  H+  I E GP   +HR +F  ++ 
Sbjct: 189 ATVAHRAAIAEYGPVIGLHRYSFALIKR 216


>gi|312134790|ref|YP_004002128.1| ribonuclease h [Caldicellulosiruptor owensensis OL]
 gi|311774841|gb|ADQ04328.1| Ribonuclease H [Caldicellulosiruptor owensensis OL]
          Length = 206

 Score =  258 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 86/197 (43%), Positives = 128/197 (64%), Gaps = 4/197 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           FE+E  +  +    + G+DE GRG LAGPV  AA+++D   I  G+ DSKK++ KKRE+L
Sbjct: 10  FEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREKL 69

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +E+I   +I  S++    + ID+ NI+ AT  A+ +A+ENL++ P   L+DG  IP +L 
Sbjct: 70  FEEIIKESIAYSVAMVDSKIIDEININNATFSAMKNAIENLKIEPDIVLVDGYEIP-NLN 128

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               A+IKGD  S SIA ASI+AKV+RDR +     KYP Y F+ H GY T +H +++++
Sbjct: 129 FNQRAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPLYKFEKHKGYGTKEHIEILRK 188

Query: 191 KGPSCIHRLTFRPLRNL 207
            GP  IHR++F  L+N+
Sbjct: 189 YGPCEIHRISF--LKNI 203


>gi|240850070|ref|YP_002971463.1| ribonuclease HII [Bartonella grahamii as4aup]
 gi|240267193|gb|ACS50781.1| ribonuclease HII [Bartonella grahamii as4aup]
          Length = 224

 Score =  258 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 98/208 (47%), Positives = 139/208 (66%), Gaps = 4/208 (1%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           MF  ++P +P+F  E  ++++  + +AG+DEVGRG LAGPVV AA+ILD ++IP  +NDS
Sbjct: 12  MF--NVPLQPNFSCELDLQKQGFFHIAGVDEVGRGPLAGPVVTAAVILDKDHIPNELNDS 69

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           KK+S  +R  LY +I  SA+ +S++S   + ID+ NI KATL+A+   +  L +     L
Sbjct: 70  KKLSFLQRNRLYHEILQSALAVSVASLCARTIDQSNIRKATLEAMRRCIIGLAIPAHYVL 129

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           +DGR IP +L C A A+IKGD  S+SIAAASIIAKVTRDR+M    + Y  YG + HVGY
Sbjct: 130 VDGRDIPSELSCPAMALIKGDQRSVSIAAASIIAKVTRDRMMECVGQVYKGYGLEKHVGY 189

Query: 180 PTAKHQQVIKEKGPSC-IHRLTFRPLRN 206
            T  H+  + + GP   +HR +F PL+ 
Sbjct: 190 ATLAHRTALDKYGPIIGLHRYSFAPLKE 217


>gi|85059907|ref|YP_455609.1| ribonuclease HII [Sodalis glossinidius str. 'morsitans']
 gi|97189300|sp|Q2NRM1|RNH2_SODGM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|84780427|dbj|BAE75204.1| ribonuclease HII [Sodalis glossinidius str. 'morsitans']
          Length = 198

 Score =  258 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 91/184 (49%), Positives = 118/184 (64%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+RE LYE+IT  A+  S+
Sbjct: 12  LIAGVDEVGRGPLVGAVVTAAVILDPARPVLGLADSKKLSEKRREALYEEITRYALAWSV 71

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID  NI++ATL A+  AV  L V+P   L+DG   P  LP  + A++KGDS  
Sbjct: 72  GRAEASEIDSINIYQATLLAMQRAVAALAVVPDFVLVDGNRCPL-LPMPSQAIVKGDSRV 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASIIAKVTRDR M   H ++P+YGF  H GYPTA H + +   G +  HR +F P
Sbjct: 131 AEISAASIIAKVTRDREMAALHLQFPEYGFAQHKGYPTAFHLEKLALHGATVHHRRSFAP 190

Query: 204 LRNL 207
           +R +
Sbjct: 191 VRRV 194


>gi|251790731|ref|YP_003005452.1| ribonuclease HII [Dickeya zeae Ech1591]
 gi|247539352|gb|ACT07973.1| Ribonuclease H [Dickeya zeae Ech1591]
          Length = 198

 Score =  258 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 86/184 (46%), Positives = 114/184 (61%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             +AG+DEVGRG L G VV AA+ILDPN    G+ DSK +S K+R  LY++I   A+  S
Sbjct: 11  RCIAGVDEVGRGPLVGAVVTAAVILDPNRPIVGLADSKTLSEKRRLALYDEIREKALAWS 70

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A  + ID  NI  AT+ A+  AV  L V P   LIDG   P  LP  + AV+KGDS 
Sbjct: 71  LGRAEPEEIDTLNILHATMLAMQRAVAALPVTPDFVLIDGNRCPA-LPMPSQAVVKGDSR 129

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRDR M +  +++P+YGF  H GYPTA H + +   G +  HR +F 
Sbjct: 130 VAEISAASILAKVTRDREMEVLDRQFPEYGFAQHKGYPTAYHLEKLATLGATLHHRRSFA 189

Query: 203 PLRN 206
           P++ 
Sbjct: 190 PVKR 193


>gi|301025937|ref|ZP_07189421.1| ribonuclease HII [Escherichia coli MS 69-1]
 gi|300395736|gb|EFJ79274.1| ribonuclease HII [Escherichia coli MS 69-1]
          Length = 198

 Score =  258 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 87/184 (47%), Positives = 112/184 (60%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG L G VV AA+ILDP+    G+NDSKK+S K+R  L E+I   A+  S
Sbjct: 10  QLVAGVDEVGRGPLVGAVVTAAVILDPSRPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  + AV+KGDS 
Sbjct: 70  LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSR 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F 
Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFG 188

Query: 203 PLRN 206
           P++ 
Sbjct: 189 PVKR 192


>gi|190571269|ref|YP_001975627.1| ribonuclease HII [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|213018665|ref|ZP_03334473.1| ribonuclease HII [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
 gi|238056783|sp|B3CM59|RNH2_WOLPP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|190357541|emb|CAQ54978.1| ribonuclease HII [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|212995616|gb|EEB56256.1| ribonuclease HII [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
          Length = 197

 Score =  258 bits (660), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 91/199 (45%), Positives = 123/199 (61%), Gaps = 6/199 (3%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKR 68
           P F LE  +       +AG+DEVGRG LAGPV+ AA+I  D + +  GINDSKK++ K R
Sbjct: 4   PDFSLENTLS----GIIAGVDEVGRGPLAGPVISAAVIFTDRDTVIDGINDSKKLTPKCR 59

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           + LYEKITS A   I  AS + I+ +NI +AT  ++  A+ NL +     L+DG   PE 
Sbjct: 60  QVLYEKITSVAKFGIGMASVEEINSYNILQATKLSMKRALANLNLELDYVLVDGNQPPE- 118

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           +  Q  +++ GDS+S+SIAAASI+AKVTRDRLM   H K+P Y +  + GY T +H   I
Sbjct: 119 VKWQVKSIVNGDSLSISIAAASIVAKVTRDRLMEELHNKHPQYNWYKNKGYGTKEHLSAI 178

Query: 189 KEKGPSCIHRLTFRPLRNL 207
              G +  HR  F P+R L
Sbjct: 179 GLHGITKHHRKNFAPIRIL 197


>gi|330872713|gb|EGH06862.1| ribonuclease HII [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 217

 Score =  258 bits (660), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 89/182 (48%), Positives = 116/182 (63%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP    FG+NDSKK++  KRE+L+ +I   A+   I
Sbjct: 13  LVAGVDEVGRGPLCGAVVTAAVILDPARPIFGLNDSKKLTEAKREKLFVEIQEKALCWFI 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI  AT+ A+  AVE L + P+ ALIDG   P+ L   +  V+KGDS  
Sbjct: 73  ARAEVEEIDQLNILHATMLAMKRAVEGLNITPKLALIDGNRCPQ-LSVPSAPVVKGDSKV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P
Sbjct: 132 PAIAAASILAKVSRDREMAALELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFGP 191

Query: 204 LR 205
           +R
Sbjct: 192 VR 193


>gi|295692915|ref|YP_003601525.1| ribonuclease hii [Lactobacillus crispatus ST1]
 gi|295031021|emb|CBL50500.1| Ribonuclease HII [Lactobacillus crispatus ST1]
          Length = 250

 Score =  258 bits (660), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 90/198 (45%), Positives = 124/198 (62%), Gaps = 4/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E    EK    VAG+DEVGRG LAGPVV AA+I+D +     +NDSKK+S +KR +
Sbjct: 54  RFSYEKKFWEKG-QLVAGVDEVGRGPLAGPVVTAAVIIDQDFDLLDVNDSKKLSPEKRLK 112

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY KI + A+ + I   S + ID+ NI++A   A+  AV  L V P + L+D  ++P +L
Sbjct: 113 LYPKILAEAVSVGIGVKSAEVIDQINIYEADRQAMAQAVRALDVKPNALLVDAMNVPVNL 172

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +IKGD+ S SIAAASI+AKV RD+LM    + YP Y F  + GY T +H + +K
Sbjct: 173 P--QVKLIKGDAKSNSIAAASIVAKVFRDQLMDDYDRIYPQYCFHHNAGYGTKEHIEALK 230

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + GP+ IHR TF P+ + 
Sbjct: 231 KYGPTLIHRKTFAPVSDF 248


>gi|163867862|ref|YP_001609066.1| ribonuclease HII [Bartonella tribocorum CIP 105476]
 gi|189043567|sp|A9IQL1|RNH2_BART1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|161017513|emb|CAK01071.1| Ribonuclease HII [Bartonella tribocorum CIP 105476]
          Length = 224

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 102/204 (50%), Positives = 139/204 (68%), Gaps = 2/204 (0%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           S+  +P+F  E  ++++  + VAG+DEVGRG LAGPVV AA+ILD + IP G+NDSKK+S
Sbjct: 14  SLSFQPNFLCELGLQKQGFFHVAGVDEVGRGPLAGPVVTAAVILDKDRIPDGLNDSKKLS 73

Query: 65  HKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
             +R  LY +I  SA+  SI+S   + ID+ NI KATL+A+   +  L V     L+DGR
Sbjct: 74  FLQRNRLYHEILQSALAASIASLCARTIDQSNIRKATLEAMRRCIIGLAVPAHYVLVDGR 133

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            IP +LPC A A+IKGD  S+SIAAASIIAKVTRDR+M  A + Y +YG + HVGY T  
Sbjct: 134 DIPSELPCPAMALIKGDQRSVSIAAASIIAKVTRDRMMECAGQVYTNYGLEKHVGYATLA 193

Query: 184 HQQVIKEKGPSC-IHRLTFRPLRN 206
           H++ + + GP   +HR +F PL+ 
Sbjct: 194 HRRALDKYGPIVGLHRYSFAPLKE 217


>gi|270264806|ref|ZP_06193070.1| ribonuclease HII [Serratia odorifera 4Rx13]
 gi|270041104|gb|EFA14204.1| ribonuclease HII [Serratia odorifera 4Rx13]
          Length = 197

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 87/183 (47%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++I   A+  S+
Sbjct: 12  LIAGVDEVGRGPLVGAVVTAAVILDPARPIIGLADSKKLSEKRRLALYDEIVEKALSWSL 71

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP ++ AV+KGDS  
Sbjct: 72  GRAEPEEIDRLNILHATMLAMQRAVAGLHIAPDMVLIDGNRCPK-LPMRSQAVVKGDSRV 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M    +++PDYGF  H GYPTA H + +   G +  HR +F P
Sbjct: 131 AEISAASILAKVTRDREMTELDREFPDYGFAQHKGYPTAFHLERLAVLGATEHHRRSFAP 190

Query: 204 LRN 206
           +R 
Sbjct: 191 VRR 193


>gi|323964924|gb|EGB60390.1| ribonuclease HII [Escherichia coli M863]
 gi|327255162|gb|EGE66765.1| ribonuclease HII family protein [Escherichia coli STEC_7v]
          Length = 198

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 87/184 (47%), Positives = 111/184 (60%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L E+I   A+  S
Sbjct: 10  QLVAGVDEVGRGPLVGAVVTAAVILDPTRPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  + AV+KGDS 
Sbjct: 70  LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSR 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F 
Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFG 188

Query: 203 PLRN 206
           P++ 
Sbjct: 189 PVKR 192


>gi|237745609|ref|ZP_04576089.1| ribonuclease HII [Oxalobacter formigenes HOxBLS]
 gi|229376960|gb|EEO27051.1| ribonuclease HII [Oxalobacter formigenes HOxBLS]
          Length = 218

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 86/184 (46%), Positives = 118/184 (64%), Gaps = 1/184 (0%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            + G DE GRG +AGPV  AA+ILDP+    G+ DSKK+S  +R+EL  +I   A   SI
Sbjct: 27  LICGADEAGRGPIAGPVFAAAVILDPDRPVNGLRDSKKLSESRRDELALEIKKKAKAWSI 86

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +  S   ID+ NI  A++ A+  A+E L V+P  AL+DG   P DL  +A A++KGD   
Sbjct: 87  AQCSVAEIDELNILWASMLAMKRAIETLSVLPELALVDGNRYPRDLSVRAEAIVKGDDRV 146

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AK  RD +MR  H++YP YGFD H GYPTA H   +K+ G S +HR T+ P
Sbjct: 147 PAISAASILAKTARDAVMRELHRQYPAYGFDRHKGYPTAFHLAQLKKYGVSPVHRRTYAP 206

Query: 204 LRNL 207
           +R +
Sbjct: 207 VRKI 210


>gi|238855692|ref|ZP_04645989.1| ribonuclease HII [Lactobacillus jensenii 269-3]
 gi|260664447|ref|ZP_05865299.1| ribonuclease HII [Lactobacillus jensenii SJ-7A-US]
 gi|282932206|ref|ZP_06337653.1| ribonuclease HII [Lactobacillus jensenii 208-1]
 gi|313472152|ref|ZP_07812644.1| ribonuclease HII [Lactobacillus jensenii 1153]
 gi|238831677|gb|EEQ24017.1| ribonuclease HII [Lactobacillus jensenii 269-3]
 gi|239529524|gb|EEQ68525.1| ribonuclease HII [Lactobacillus jensenii 1153]
 gi|260561512|gb|EEX27484.1| ribonuclease HII [Lactobacillus jensenii SJ-7A-US]
 gi|281303656|gb|EFA95811.1| ribonuclease HII [Lactobacillus jensenii 208-1]
          Length = 252

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 92/197 (46%), Positives = 120/197 (60%), Gaps = 4/197 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F+ E          VAG+DEVGRG LAGPVV AA++LD +     +NDSKK+S KKR E
Sbjct: 54  RFQYEQKAWAAG-SIVAGVDEVGRGPLAGPVVTAAVVLDDSFDLVEVNDSKKLSPKKRLE 112

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY +I   A+ + I   S + IDK NI++A   A+  AV NL + P   L+D  ++P D+
Sbjct: 113 LYPRILDKAVAVGIGVGSPELIDKINIYEADRVAMAQAVNNLALRPDLLLVDAMNVPVDI 172

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             +   +IKGDS S SIAAASI+AKV RD LM    K YP Y F+ + GY TAKH   +K
Sbjct: 173 --KQIELIKGDSKSNSIAAASIVAKVFRDELMNDYAKVYPQYDFEHNAGYGTAKHLAALK 230

Query: 190 EKGPSCIHRLTFRPLRN 206
           E G + IHR +F P+  
Sbjct: 231 EFGATPIHRRSFSPVSE 247


>gi|15615038|ref|NP_243341.1| ribonuclease H [Bacillus halodurans C-125]
 gi|10720371|sp|Q9Z9S0|RNH2_BACHD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|10175095|dbj|BAB06194.1| ribonuclease H [Bacillus halodurans C-125]
          Length = 263

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 84/202 (41%), Positives = 122/202 (60%), Gaps = 3/202 (1%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           +        E  +  K    VAG+DEVGRG LAGPVV AA+IL  +    G+ DSKK++ 
Sbjct: 56  MEHEEMLAYEKDLWAKGYEHVAGLDEVGRGPLAGPVVTAAVILPKDVQLPGLTDSKKLAK 115

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           + RE  Y++I   A+  S++      ID+ NI++AT   +  A++ L V P + L+D  +
Sbjct: 116 ETRESFYDRIKEVALAWSVAIVPVTVIDEVNIYQATKQGMMSAIDQLSVNPDALLLDAMN 175

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +P  LP Q+  +IKGD  SLSIAA+S++AKVTRDR M     +YP+YGF+ HVGY T +H
Sbjct: 176 LPLSLPQQS--LIKGDQKSLSIAASSVLAKVTRDRYMADLANRYPEYGFERHVGYGTEEH 233

Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206
              +   G +  HR +FRP++ 
Sbjct: 234 LAALNAHGITPEHRRSFRPVQE 255


>gi|330964157|gb|EGH64417.1| ribonuclease HII [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 217

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 88/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  KRE+L+ +I   A+   I
Sbjct: 13  LVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEAKREKLFVEIQEKALCWFI 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI  AT+ A+  AVE L + P+ ALIDG   P+ L   +  V+KGDS  
Sbjct: 73  ARAEVEEIDQLNILHATMLAMKRAVEGLNITPKLALIDGNRCPQ-LSVPSAPVVKGDSKV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P
Sbjct: 132 PAIAAASILAKVSRDREMAALELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFGP 191

Query: 204 LR 205
           +R
Sbjct: 192 VR 193


>gi|320546752|ref|ZP_08041063.1| ribonuclease HII [Streptococcus equinus ATCC 9812]
 gi|320448631|gb|EFW89363.1| ribonuclease HII [Streptococcus equinus ATCC 9812]
          Length = 259

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 86/200 (43%), Positives = 122/200 (61%), Gaps = 6/200 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + ++    + GIDEVGRG LAGPVV A +IL  N     +NDSKKI  K  EE+
Sbjct: 58  LRYEKELYKQGYQAIGGIDEVGRGPLAGPVVTACVILPKNCKIKHLNDSKKIPKKHHEEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127
           YE++ + A+ + I    +  ID  NI++AT   +  A+E L+     P   LID   +  
Sbjct: 118 YEEVLARALGVGIGVIDNNVIDDINIYEATKVGMLQAIEQLKGEVTRPDYLLIDAMHLDT 177

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           D+P    ++IKGD+ SLSIAAASI+AKVTRDR+M    K+YP Y F+ +VGY T  H + 
Sbjct: 178 DIP--QESLIKGDANSLSIAAASIVAKVTRDRMMADYAKEYPGYAFEKNVGYGTKDHLEG 235

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           +K+ G + IHR TF P++++
Sbjct: 236 LKKLGITPIHRKTFEPIKSM 255


>gi|309796360|ref|ZP_07690769.1| ribonuclease HII [Escherichia coli MS 145-7]
 gi|308120064|gb|EFO57326.1| ribonuclease HII [Escherichia coli MS 145-7]
          Length = 198

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 89/184 (48%), Positives = 112/184 (60%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  LYE+I   A+  S
Sbjct: 10  QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEEIKEKALSWS 69

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  A AV+KGDS 
Sbjct: 70  LGRAEPHEIDELNILHATMLAMQRAVAELHIAPEYVLIDGNRCPK-LPMPAMAVVKGDSR 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F 
Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFG 188

Query: 203 PLRN 206
           P++ 
Sbjct: 189 PVKR 192


>gi|225077059|ref|ZP_03720258.1| hypothetical protein NEIFLAOT_02112 [Neisseria flavescens
           NRL30031/H210]
 gi|224951616|gb|EEG32825.1| hypothetical protein NEIFLAOT_02112 [Neisseria flavescens
           NRL30031/H210]
          Length = 230

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 84/182 (46%), Positives = 108/182 (59%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG L G V  AA+IL  +    G+ DSKK+S KKR+ L + I   A+  SI+ 
Sbjct: 40  AGVDEAGRGPLVGSVFAAAVILPEHFDLPGLTDSKKLSEKKRDMLAQMIKEQAVAWSIAF 99

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A    I K NI  AT+ A+  AVE L V P    IDG  +P+DL   A AV+KGDS  + 
Sbjct: 100 ADPDEILKLNILHATMAAMKRAVEGLSVAPDKVWIDGNRVPKDLNVPAEAVVKGDSKIIE 159

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AAS++AK  RD  M    K+YP YGFD H GY TA+H   +K+ G    HR  F P++
Sbjct: 160 ISAASVLAKTARDAEMYELAKRYPQYGFDRHKGYGTAQHLAALKQYGVLLEHRRDFAPVK 219

Query: 206 NL 207
            L
Sbjct: 220 TL 221


>gi|148265777|ref|YP_001232483.1| ribonuclease HII [Geobacter uraniireducens Rf4]
 gi|189043599|sp|A5G7Z2|RNH2_GEOUR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|146399277|gb|ABQ27910.1| RNase HII [Geobacter uraniireducens Rf4]
          Length = 216

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 98/202 (48%), Positives = 123/202 (60%), Gaps = 3/202 (1%)

Query: 7   PERPHF-ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
            ERP   E E++VR +    +AGIDE GRG LAGPVV AA+IL       G+NDSKK+S 
Sbjct: 10  EERPSLLEFESLVRRQGYACIAGIDEAGRGPLAGPVVAAAVILPNGVELPGVNDSKKLSP 69

Query: 66  KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
            KR EL++ I +SA  + + S+    ID+ NI +ATL A+  AV  L + P   LIDG S
Sbjct: 70  VKRNELFDLIMASASAVGVGSSDAGLIDEINILQATLAAMKQAVSMLCIPPDYLLIDGIS 129

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
               L      + KGDS+SLSIAAASIIAKV+RDRLM     ++P YGF +H GY    H
Sbjct: 130 -KVPLSIPQKTIKKGDSLSLSIAAASIIAKVSRDRLMMDYETRFPGYGFAAHKGYGCVSH 188

Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206
              I E GP  IHR TFR ++ 
Sbjct: 189 MAAIAELGPCAIHRKTFRGVKE 210


>gi|271499509|ref|YP_003332534.1| Ribonuclease H [Dickeya dadantii Ech586]
 gi|270343064|gb|ACZ75829.1| Ribonuclease H [Dickeya dadantii Ech586]
          Length = 198

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 85/183 (46%), Positives = 114/183 (62%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP+    G+ DSK +S K+R  LY++I   A+  S+
Sbjct: 12  CIAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLADSKTLSEKRRLALYDEIREKALAWSL 71

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID  NI  AT+ A+  AV  L V P   LIDG   P  LP  + AV+KGDS  
Sbjct: 72  GRAEPEEIDTLNILHATMLAMQRAVAALPVTPDFVLIDGNRCPA-LPMPSQAVVKGDSRV 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M +  +++P+YGF  H GYPTA H + +   G +  HR +F P
Sbjct: 131 AEISAASILAKVTRDREMEVLDQQFPEYGFAQHKGYPTAYHLEKLATLGATLHHRRSFAP 190

Query: 204 LRN 206
           ++ 
Sbjct: 191 VKR 193


>gi|227326550|ref|ZP_03830574.1| ribonuclease HII [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 198

 Score =  258 bits (659), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 85/183 (46%), Positives = 114/183 (62%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP     G+ DSK++S K+R  LY++I   A+  S+
Sbjct: 12  CIAGVDEVGRGPLVGAVVTAAVILDPTRPIVGLADSKQLSEKRRLSLYDEIKEKALAWSL 71

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID+ NI  AT+ A+  AV  L ++P   LIDG   P  LP  A AV+KGDS  
Sbjct: 72  GRAEPEEIDQLNILHATMLAMQRAVAGLAIVPDFVLIDGNRCPA-LPMSAQAVVKGDSRV 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M    +++P YGF  H GYPTA H + +   G +  HR +F P
Sbjct: 131 AEISAASIMAKVTRDREMVELDQRFPAYGFAQHKGYPTAFHLEKLAALGATEFHRRSFAP 190

Query: 204 LRN 206
           ++ 
Sbjct: 191 VKR 193


>gi|89052882|ref|YP_508333.1| ribonuclease H [Jannaschia sp. CCS1]
 gi|122499674|sp|Q28VF4|RNH2_JANSC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|88862431|gb|ABD53308.1| RNase HII [Jannaschia sp. CCS1]
          Length = 199

 Score =  258 bits (659), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 89/198 (44%), Positives = 123/198 (62%), Gaps = 4/198 (2%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P FE+E  +       VAG+DEVGRG  AGPV   A++LDP  +P G+NDSKK+S  +R+
Sbjct: 3   PDFEIERELG----GLVAGVDEVGRGPWAGPVTACAVVLDPMQVPDGLNDSKKLSEARRD 58

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L  +I   A +S+  AS + ID  NI +AT  A+  A++ L   P  ALIDG +IP  L
Sbjct: 59  ALAMQILRVADVSLGWASVEEIDALNIRQATFLAMRRAMDGLTTPPTHALIDGNAIPPGL 118

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C A  V+KGD  S+SIAAASI+AKV RD LM+     +P YG+++++GY TAKH   + 
Sbjct: 119 SCPATCVVKGDGRSVSIAAASIVAKVRRDALMKELAVMHPGYGWETNMGYGTAKHAAGLH 178

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G +  HR +F P+  +
Sbjct: 179 HLGVTQYHRRSFAPIAKI 196


>gi|171059517|ref|YP_001791866.1| ribonuclease HII [Leptothrix cholodnii SP-6]
 gi|170776962|gb|ACB35101.1| Ribonuclease H [Leptothrix cholodnii SP-6]
          Length = 218

 Score =  258 bits (659), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 85/193 (44%), Positives = 125/193 (64%), Gaps = 2/193 (1%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77
           +  + +  +AG+DE GRG LAGPVV AA+ILD      G+ DSK ++ ++RE L+++I +
Sbjct: 18  LHFERVGLMAGVDEAGRGPLAGPVVAAAVILDELQPIAGLADSKILTERRRERLFDEIRA 77

Query: 78  SAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136
            A+   I+ AS + ID+ NI +AT+ A+  AVE L++ P   L+DG  +P  L   A A+
Sbjct: 78  KALAFCIAQASVEEIDRLNILQATMLAMKRAVEGLRLKPAQVLVDGNRVPV-LRIPAEAI 136

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           +KGD+   +I+AASI+AKV RDRL +  H+ YP YGF  H GYPTA H Q +K+ GP   
Sbjct: 137 VKGDAKVPAISAASILAKVHRDRLCQALHELYPHYGFAVHKGYPTAAHLQALKDHGPCES 196

Query: 197 HRLTFRPLRNLSV 209
           HR ++ P+R   +
Sbjct: 197 HRKSYAPVREAGL 209


>gi|294793773|ref|ZP_06758910.1| ribonuclease HII [Veillonella sp. 3_1_44]
 gi|294455343|gb|EFG23715.1| ribonuclease HII [Veillonella sp. 3_1_44]
          Length = 279

 Score =  258 bits (659), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 86/197 (43%), Positives = 130/197 (65%), Gaps = 2/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           ++ E M  ++ ++ VAG+DEVGRG +AGPV VAA+IL P  +  G+NDSKK++ +KRE L
Sbjct: 77  YDYEGMFYDQGIYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREAL 136

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I   A+ +S      + ID+ NI++AT  A+Y A+  L V   + + D   +P DL 
Sbjct: 137 YDIIMDEAVAVSCIFYGPEKIDELNIYEATRQAMYEAIRTLSVPAEAVVADAMKLP-DLR 195

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGDS S +IAAAS+IAKVTRDR M+    +YP YGF  H GY T  H++ I++
Sbjct: 196 IPVESIIKGDSKSANIAAASVIAKVTRDRYMKSLDDEYPGYGFGIHKGYYTELHKEAIEQ 255

Query: 191 KGPSCIHRLTFRPLRNL 207
           +G + +HR +F P++++
Sbjct: 256 QGVTPLHRKSFEPIKSI 272


>gi|85711419|ref|ZP_01042478.1| Ribonuclease HII [Idiomarina baltica OS145]
 gi|85694920|gb|EAQ32859.1| Ribonuclease HII [Idiomarina baltica OS145]
          Length = 188

 Score =  258 bits (659), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 90/182 (49%), Positives = 118/182 (64%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + G+DE GRG +AGPVV AA+ILDP     G+NDSKK+S KKRE L E+I + A+  SI+
Sbjct: 2   ICGVDEAGRGPIAGPVVAAAVILDPEQPIEGLNDSKKLSAKKRERLSEEIKAKALYWSIA 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            +    ID+ NI  A++ A+  AVE L   P   L+DG  +P DL   A AV+ GD+   
Sbjct: 62  QSDVDEIDQLNILWASMLAMKRAVEALPEAPTEVLVDGNRVP-DLVVPARAVVGGDASEP 120

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKV RDR M   H+ YP Y FD H  Y TA+H +++K  GP  IHR +FRP+
Sbjct: 121 TIAAASILAKVERDRQMLEWHQTYPQYEFDRHKAYGTARHLELLKLYGPCVIHRRSFRPV 180

Query: 205 RN 206
           R 
Sbjct: 181 RE 182


>gi|148549378|ref|YP_001269480.1| ribonuclease HII [Pseudomonas putida F1]
 gi|166226641|sp|A5W836|RNH2_PSEP1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|148513436|gb|ABQ80296.1| RNase HII [Pseudomonas putida F1]
          Length = 207

 Score =  258 bits (659), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 89/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE L+++I   A+   I
Sbjct: 13  LVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREALFDEICEKALSFCI 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID  NI +AT+ A+  AVE L + P+ ALIDG   P+ L   A  V+KGDS  
Sbjct: 73  ARAEVEEIDSLNILQATMLAMQRAVEGLHITPKLALIDGNRCPK-LAVPAAPVVKGDSQV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKVTRDR M      YP YG   H GYPT  H + +   GP+ IHR +F P
Sbjct: 132 PAIAAASILAKVTRDREMSAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 191

Query: 204 LR 205
           +R
Sbjct: 192 VR 193


>gi|212636263|ref|YP_002312788.1| ribonuclease HII [Shewanella piezotolerans WP3]
 gi|226736824|sp|B8CQ71|RNH2_SHEPW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|212557747|gb|ACJ30201.1| Ribonuclease H [Shewanella piezotolerans WP3]
          Length = 202

 Score =  258 bits (659), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 88/181 (48%), Positives = 119/181 (65%), Gaps = 2/181 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DEVGRG L G VV AA+ILDP+N   G+NDSKK+S KKRE L+ +I   A+ +S+ +
Sbjct: 21  AGVDEVGRGPLIGNVVTAAVILDPHNPIVGLNDSKKLSEKKRELLFNQIQEKALSVSVGA 80

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A+   ID+ NI  AT+ A+  AV  L + P S L+DG   P D   Q+ A+IKGD +  +
Sbjct: 81  ATPAEIDEINILHATMMAMQRAVAGLSIKPTSVLVDGNRCP-DFGMQSHAIIKGDGLIDA 139

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AKV RDR M     +YP+YGF+ H GYPT  H + + + G    HR +FRP+R
Sbjct: 140 ISAASIVAKVVRDREMEALAAQYPEYGFEKHKGYPTKAHFEALAKYGILAEHRKSFRPVR 199

Query: 206 N 206
            
Sbjct: 200 E 200


>gi|330807795|ref|YP_004352257.1| ribonuclease HII [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327375903|gb|AEA67253.1| ribonuclease HII [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 214

 Score =  257 bits (658), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 87/182 (47%), Positives = 117/182 (64%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE+LY++I   A+   I
Sbjct: 21  LVAGVDEVGRGPLCGAVVTAAVILDPKRPILGLNDSKKLTEARREKLYDEICEKALSWCI 80

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI  AT+ A+  AV+ L + P+ A+IDG   P+ L  +A AVI+GD   
Sbjct: 81  ARAEVEEIDELNILHATMLAMQRAVQGLHITPKLAMIDGNRCPK-LSMRAEAVIQGDGKV 139

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P
Sbjct: 140 PAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 199

Query: 204 LR 205
           +R
Sbjct: 200 VR 201


>gi|320540045|ref|ZP_08039701.1| putative ribonuclease HII, degrades RNA of DNA-RNA hybrids
           [Serratia symbiotica str. Tucson]
 gi|320029894|gb|EFW11917.1| putative ribonuclease HII, degrades RNA of DNA-RNA hybrids
           [Serratia symbiotica str. Tucson]
          Length = 197

 Score =  257 bits (658), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 87/184 (47%), Positives = 116/184 (63%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LYE+I + A+  S+
Sbjct: 12  LIAGVDEVGRGPLVGAVVTAAVILDPAQPIVGLADSKKLSEKRRLALYEEIIAKALSWSL 71

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID+ NI  AT+ A+  AV  L ++P   LIDG   P  LP ++ AV+KGDS  
Sbjct: 72  GRAEPEEIDRLNILHATMLAMQRAVAGLPIVPDMVLIDGNRCPT-LPMRSQAVVKGDSRV 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M    + +P YGF  H GYPTA H + +   G +  HR +F P
Sbjct: 131 AEISAASILAKVTRDREMIELDRVFPGYGFAQHKGYPTAFHLEQLAVLGATEHHRRSFAP 190

Query: 204 LRNL 207
           +R +
Sbjct: 191 VRRV 194


>gi|312878029|ref|ZP_07737967.1| Ribonuclease H [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795181|gb|EFR11572.1| Ribonuclease H [Caldicellulosiruptor lactoaceticus 6A]
          Length = 206

 Score =  257 bits (658), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 85/197 (43%), Positives = 128/197 (64%), Gaps = 4/197 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           FE+E  +  +    + G+DE GRG LAGPV  AA+++D   I  G+ DSKK++ KKRE+L
Sbjct: 10  FEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREKL 69

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +++I   +I  S++    + ID+ NI+ AT  A+ +A+ENL++ P   L+DG  IP +L 
Sbjct: 70  FDEIIKESIAYSVAMVDSKIIDEININNATFLAMKNAIENLKIEPDIVLVDGYEIP-NLS 128

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               A+IKGD  S SIA ASI+AKV+RDR +     KYP Y F+ H GY T +H +++++
Sbjct: 129 FNQMAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPVYKFEKHKGYGTKEHIEILQK 188

Query: 191 KGPSCIHRLTFRPLRNL 207
            GP  IHR++F  L+N+
Sbjct: 189 YGPCEIHRISF--LKNI 203


>gi|300173225|ref|YP_003772391.1| ribonuclease HII [Leuconostoc gasicomitatum LMG 18811]
 gi|299887604|emb|CBL91572.1| ribonuclease HII [Leuconostoc gasicomitatum LMG 18811]
          Length = 254

 Score =  257 bits (658), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 87/197 (44%), Positives = 120/197 (60%), Gaps = 3/197 (1%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E    ++ +  +AGIDEVGRG LAGPV+ AA+IL  +     + DSK++S KKRE 
Sbjct: 58  RFSFERHYWDQGVTYIAGIDEVGRGPLAGPVIAAAVILPSDFHHIDVIDSKQLSAKKREM 117

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY  I   AI I +       ID  NI++A   A+  AV++L   P   LID  S+  D+
Sbjct: 118 LYHIIIEQAISIGVGIVDAATIDDINIYQAAKLAMTKAVKDLAPEPEVLLIDAMSL--DI 175

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P    ++IKGD++S SI AASIIAKVTRDRLM      YP YGF ++ GY T +H   +K
Sbjct: 176 PITQESLIKGDALSNSIGAASIIAKVTRDRLMTEYSVMYPGYGFANNAGYGTKEHLDGLK 235

Query: 190 EKGPSCIHRLTFRPLRN 206
           ++G + IHR +F+P+ +
Sbjct: 236 KRGITPIHRQSFQPVHD 252


>gi|23098995|ref|NP_692461.1| ribonuclease H [Oceanobacillus iheyensis HTE831]
 gi|39932410|sp|Q8EQZ4|RNH2_OCEIH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|22777223|dbj|BAC13496.1| ribonuclease H [Oceanobacillus iheyensis HTE831]
          Length = 261

 Score =  257 bits (658), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 89/194 (45%), Positives = 116/194 (59%), Gaps = 2/194 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E          +AG+DEVGRG LAGPVV AA+IL  +    GINDSKK+S  +R E   
Sbjct: 61  YEKEAYRNGNHYIAGVDEVGRGPLAGPVVAAAVILPKDFQLLGINDSKKLSEVQRNEFSH 120

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   AI   IS   +  IDK NI++A+  A+  A+  LQ  P  ALID   + E L C 
Sbjct: 121 YIKQHAIAYQISFIDNTIIDKINIYEASKQAMKEAISGLQPYPDHALIDAVPL-EGLNCT 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             A+IKGD+ S+ IAAAS++AKV RD  M+  H+KYP YGF+S++GY T +H Q I+  G
Sbjct: 180 YEAIIKGDAESVHIAAASVLAKVARDDWMKELHEKYPLYGFNSNMGYGTKEHLQAIETYG 239

Query: 193 PSCIHRLTFRPLRN 206
            +  HR +F PL  
Sbjct: 240 VTPYHRYSFAPLHK 253


>gi|296101352|ref|YP_003611498.1| ribonuclease HII [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055811|gb|ADF60549.1| ribonuclease HII [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 198

 Score =  257 bits (658), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 88/183 (48%), Positives = 112/183 (61%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L+++I   A+  S+
Sbjct: 11  LVAGVDEVGRGPLVGAVVTAAVILDPARPIIGLNDSKKLSEKRRLALFDEIQEKALAWSL 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID+ NI  AT+ A+  AV  L++ P   LIDG   P  LP  + AV+KGDS  
Sbjct: 71  GRAEPHEIDELNILHATMLAMQRAVAGLKIAPEYVLIDGNRCPA-LPVPSMAVVKGDSRV 129

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASIIAKVTRD  M      YP YGF  H GYPTA H + + E G +  HR +F P
Sbjct: 130 AEISAASIIAKVTRDAEMAALDLTYPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGP 189

Query: 204 LRN 206
           ++ 
Sbjct: 190 VKR 192


>gi|238026917|ref|YP_002911148.1| ribonuclease HII [Burkholderia glumae BGR1]
 gi|237876111|gb|ACR28444.1| Ribonuclease HII [Burkholderia glumae BGR1]
          Length = 215

 Score =  257 bits (658), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 92/182 (50%), Positives = 117/182 (64%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83
            V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKRE LY +I   A    +
Sbjct: 28  IVCGVDEAGRGPLAGPVVAAAVILDPARPIVGLDDSKALSAKKRERLYAEIVERAQAYCV 87

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS + ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  ++ A+I GD++ 
Sbjct: 88  ASASVEEIDTLNILHATMLAMKRAVEGLAVLPTLAQIDGNRCPT-LAIRSEAIIGGDALV 146

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDRL+   H  +P YGFD H GY T KH   ++E GP   HR +F P
Sbjct: 147 PSISAASILAKVTRDRLLVDLHASFPLYGFDVHSGYGTPKHLAALREHGPCEHHRRSFAP 206

Query: 204 LR 205
           +R
Sbjct: 207 VR 208


>gi|242240382|ref|YP_002988563.1| ribonuclease HII [Dickeya dadantii Ech703]
 gi|242132439|gb|ACS86741.1| Ribonuclease H [Dickeya dadantii Ech703]
          Length = 198

 Score =  257 bits (658), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 86/184 (46%), Positives = 113/184 (61%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83
            +AG+DEVGRG L G VV AA+ILDP     G+ DSK++S K+R  LY++I   A   S+
Sbjct: 12  CIAGVDEVGRGPLVGAVVTAAVILDPAKPIAGLADSKQLSEKRRRVLYDEIREKARAWSL 71

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID+ NI  AT+ A+  AV  L V P   LIDG   P  LP  + AV+KGDS  
Sbjct: 72  GRAEPEEIDQLNILHATMLAMQRAVAGLPVTPDYVLIDGNRCP-SLPMPSMAVVKGDSRV 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M    K +P+YGF  H GYPTA H + +   G +  HR +F P
Sbjct: 131 AEISAASILAKVTRDREMEELDKLFPEYGFAQHKGYPTAYHLEKLATLGATLHHRRSFAP 190

Query: 204 LRNL 207
           ++ +
Sbjct: 191 VKRV 194


>gi|125718010|ref|YP_001035143.1| ribonuclease HII [Streptococcus sanguinis SK36]
 gi|166226664|sp|A3CN38|RNH2_STRSV RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|125497927|gb|ABN44593.1| Ribonuclease HII, putative [Streptococcus sanguinis SK36]
          Length = 254

 Score =  257 bits (658), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 86/197 (43%), Positives = 124/197 (62%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + + +   +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  KK +E+
Sbjct: 58  LRYEKELYKADYQAIAGIDEVGRGPLAGPVVAAAVILPPECKIKGLNDSKKIPKKKHQEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ +   A+ + +   +++ ID+ NI++AT  A+  A+  L + P   LID   +  D+P
Sbjct: 118 YQAVLDKALAVGVGLMNNEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKLDVDIP 177

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD+LM    KK+P Y F  + GY T  H Q ++ 
Sbjct: 178 --QESIIKGDANSLSIAAASIVAKVTRDKLMADYDKKFPGYDFAKNAGYGTRSHLQGLER 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR TF P++++
Sbjct: 236 SGVTPIHRKTFEPIKSM 252


>gi|289626020|ref|ZP_06458974.1| ribonuclease HII [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|330868556|gb|EGH03265.1| ribonuclease HII [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 217

 Score =  257 bits (658), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 88/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE+LY +I   A+   I
Sbjct: 13  LVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLYVEIQEKALCWFI 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI  AT+ A+  AVE L + P+ ALIDG   P+ L   +  V+KGDS  
Sbjct: 73  ARAEVEEIDQLNILHATMLAMKRAVEGLSITPKLALIDGNRCPQ-LSVPSAPVVKGDSRV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P
Sbjct: 132 PAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 191

Query: 204 LR 205
           +R
Sbjct: 192 VR 193


>gi|26988337|ref|NP_743762.1| ribonuclease HII [Pseudomonas putida KT2440]
 gi|37999636|sp|Q88MG6|RNH2_PSEPK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|24983086|gb|AAN67226.1|AE016349_7 ribonuclease HII [Pseudomonas putida KT2440]
 gi|313500227|gb|ADR61593.1| RnhB [Pseudomonas putida BIRD-1]
          Length = 207

 Score =  257 bits (658), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 89/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE L+++I   A+   I
Sbjct: 13  LVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREALFDEICEKALSFCI 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID  NI +AT+ A+  AVE L + P+ ALIDG   P+ L   A  V+KGDS  
Sbjct: 73  ARAEVEEIDSLNILQATMLAMQRAVEGLHITPKLALIDGNRCPK-LAVPAAPVVKGDSQV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKVTRDR M      YP YG   H GYPT  H + +   GP+ IHR +F P
Sbjct: 132 PAIAAASILAKVTRDREMSAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 191

Query: 204 LR 205
           +R
Sbjct: 192 VR 193


>gi|330817425|ref|YP_004361130.1| Ribonuclease HII [Burkholderia gladioli BSR3]
 gi|327369818|gb|AEA61174.1| Ribonuclease HII [Burkholderia gladioli BSR3]
          Length = 217

 Score =  257 bits (658), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 90/183 (49%), Positives = 118/183 (64%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83
            V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKRE LY +I + +    +
Sbjct: 30  IVCGVDEAGRGPLAGPVVAAAVILDPARPILGLDDSKALSAKKRELLYHEIVAHSRAWCV 89

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS + ID  NI  AT+ A+  AVE L ++P  A IDG   P  L  ++ A++ GD++ 
Sbjct: 90  ASASVEEIDTLNILHATMLAMRRAVEGLSLLPTLAKIDGNRCPT-LGIRSEAIVGGDALV 148

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASIIAKVTRDRL+   H  +P YGFD H GY T KH   ++E GP   HR +F P
Sbjct: 149 PSISAASIIAKVTRDRLLVDLHATFPHYGFDVHAGYGTPKHLAALREHGPCEHHRRSFAP 208

Query: 204 LRN 206
           +R 
Sbjct: 209 VRE 211


>gi|260220952|emb|CBA29032.1| Ribonuclease HII [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 193

 Score =  257 bits (658), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 87/182 (47%), Positives = 119/182 (65%), Gaps = 2/182 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82
             VAG+DE GRG LAGPVV AA+ILD      G+NDSKK+S  +RE+L+++I + A+  S
Sbjct: 9   GLVAGVDEAGRGPLAGPVVAAAVILDDLRPIAGLNDSKKLSAARREKLFDEIRAKALCCS 68

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+ AS + ID+ NI +ATL A+  AVE L++ P   L+DG  +P  L   A A++KGD+ 
Sbjct: 69  IAQASVEEIDEINILQATLLAMRRAVEGLRLKPAKVLVDGNRLPV-LDVLAEAIVKGDAT 127

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +I+AASI+AKVTRDR       +YP YGF +H GY TA+H   ++  G    HR TF 
Sbjct: 128 VPAISAASILAKVTRDRWCAELDARYPQYGFATHKGYGTAEHLAALQTHGACPEHRKTFA 187

Query: 203 PL 204
           P+
Sbjct: 188 PV 189


>gi|257487068|ref|ZP_05641109.1| ribonuclease HII [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289651463|ref|ZP_06482806.1| ribonuclease HII [Pseudomonas syringae pv. aesculi str. 2250]
 gi|320323106|gb|EFW79195.1| ribonuclease HII [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329622|gb|EFW85611.1| ribonuclease HII [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330878151|gb|EGH12300.1| ribonuclease HII [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330894608|gb|EGH27269.1| ribonuclease HII [Pseudomonas syringae pv. mori str. 301020]
 gi|330985124|gb|EGH83227.1| ribonuclease HII [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 217

 Score =  257 bits (658), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 88/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE+LY +I   A+   I
Sbjct: 13  LVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLYVEIQEKALCWFI 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI  AT+ A+  AVE L + P+ ALIDG   P+ L   +  V+KGDS  
Sbjct: 73  ARAEVEEIDQLNILHATMLAMKRAVEGLSITPKLALIDGNRCPQ-LSVPSAPVVKGDSRV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P
Sbjct: 132 PAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 191

Query: 204 LR 205
           +R
Sbjct: 192 VR 193


>gi|127513549|ref|YP_001094746.1| ribonuclease H [Shewanella loihica PV-4]
 gi|166226652|sp|A3QG89|RNH2_SHELP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|126638844|gb|ABO24487.1| RNase HII [Shewanella loihica PV-4]
          Length = 208

 Score =  257 bits (658), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 88/186 (47%), Positives = 119/186 (63%), Gaps = 3/186 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
              AG+DEVGRG L G VV AA++LDPNN   G+NDSKK+S KKR+ LYE+I + A+ +S
Sbjct: 18  GFYAGVDEVGRGPLVGDVVTAAVVLDPNNPIEGLNDSKKLSEKKRDALYEEILAKALDVS 77

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGD 140
           +   S   ID+ NI  AT+ A+  AV  L+  P   LIDG  +P+  D   +  AVIKGD
Sbjct: 78  VGRCSPLEIDELNILHATMLAMQRAVAGLRARPDRVLIDGNRVPDFTDETLEGHAVIKGD 137

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
            +  +I+AASI+AKV RDR M    ++YP+YGF  H GYPT  H + ++  G    HR +
Sbjct: 138 GLIPAISAASIVAKVVRDREMEALDERYPEYGFAKHKGYPTKAHFEALEAHGVLAEHRKS 197

Query: 201 FRPLRN 206
           FRP++ 
Sbjct: 198 FRPVKE 203


>gi|71738075|ref|YP_275964.1| ribonuclease HII [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|298488346|ref|ZP_07006378.1| Ribonuclease HII [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|97189174|sp|Q48F73|RNH2_PSE14 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|71558628|gb|AAZ37839.1| Ribonuclease HII (RNase HII) [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|298157168|gb|EFH98256.1| Ribonuclease HII [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 222

 Score =  257 bits (658), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 88/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE+LY +I   A+   I
Sbjct: 18  LVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLYVEIQEKALCWFI 77

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI  AT+ A+  AVE L + P+ ALIDG   P+ L   +  V+KGDS  
Sbjct: 78  ARAEVEEIDQLNILHATMLAMKRAVEGLSITPKLALIDGNRCPQ-LSVPSAPVVKGDSRV 136

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P
Sbjct: 137 PAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 196

Query: 204 LR 205
           +R
Sbjct: 197 VR 198


>gi|223933031|ref|ZP_03625025.1| Ribonuclease H [Streptococcus suis 89/1591]
 gi|302023800|ref|ZP_07249011.1| ribonuclease HII [Streptococcus suis 05HAS68]
 gi|330832827|ref|YP_004401652.1| ribonuclease HII [Streptococcus suis ST3]
 gi|223898348|gb|EEF64715.1| Ribonuclease H [Streptococcus suis 89/1591]
 gi|329307050|gb|AEB81466.1| ribonuclease HII [Streptococcus suis ST3]
          Length = 259

 Score =  257 bits (657), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 82/195 (42%), Positives = 117/195 (60%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  + E  +  +AGIDEVGRG LAGPVV AA+IL        +NDSKKI   K E +Y+
Sbjct: 60  YEKNLYENGVEFIAGIDEVGRGPLAGPVVAAAVILPKGCKIRYLNDSKKIPKSKHEAIYQ 119

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           ++   A+ + +       ID+ NI++AT  A+  A   L   P   LID   +  D P  
Sbjct: 120 EVMERAVAVGVGIKDAAVIDQVNIYEATKLAMLEAFGKLSQKPDHLLIDAMKL--DTPIP 177

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ SLSIAAASI+AKVTRD++M    K++  YGF  + GY TA+H + + + G
Sbjct: 178 QTSIIKGDANSLSIAAASIVAKVTRDKMMADYDKEFSGYGFAKNAGYGTAEHLEGLNKLG 237

Query: 193 PSCIHRLTFRPLRNL 207
            + IHR TF P++++
Sbjct: 238 ITPIHRKTFEPIKSM 252


>gi|307729345|ref|YP_003906569.1| Ribonuclease H [Burkholderia sp. CCGE1003]
 gi|307583880|gb|ADN57278.1| Ribonuclease H [Burkholderia sp. CCGE1003]
          Length = 271

 Score =  257 bits (657), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 89/184 (48%), Positives = 120/184 (65%), Gaps = 3/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-IS 82
            V G+DE GRG LAGPVV AA+I DP+     G++DSK ++ KKR+ELYEKI   A+   
Sbjct: 45  IVCGVDEAGRGPLAGPVVAAAVIFDPSKPMIRGLDDSKALTAKKRDELYEKIVDRALAYC 104

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+SA+ + ID  NI  AT+ A+  AVE L V P    +DG   P  L  ++ AVI GD++
Sbjct: 105 IASATVEEIDSLNILHATMLAMKRAVEGLSVTPTLVKVDGNRCPT-LSVRSEAVIGGDAL 163

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             SI+AASI+AKVTRDR++   H+ YP YGF++H GY T +H   ++E GP   HR +F 
Sbjct: 164 VKSISAASILAKVTRDRMLLELHQTYPMYGFNAHAGYGTPQHLAALREHGPCEHHRRSFA 223

Query: 203 PLRN 206
           P+R 
Sbjct: 224 PVRE 227


>gi|238897797|ref|YP_002923476.1| RNAse HII [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|259494067|sp|C4K435|RNH2_HAMD5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|229465554|gb|ACQ67328.1| RNAse HII [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 200

 Score =  257 bits (657), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 91/184 (49%), Positives = 115/184 (62%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             +AG+DEVGRG LAGPVV AA+ILDP N   G+ DSK +S KKR  LYE+IT  A+  S
Sbjct: 11  QSIAGVDEVGRGPLAGPVVTAAVILDPKNPIIGLADSKTLSKKKRMALYEEITHKALAWS 70

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A  + ID+ NI  ATL A+  AV  L +     LIDG   P  L   + +++KGDS 
Sbjct: 71  LGRAESKEIDEINIFHATLLAMQRAVNALGIKTDHVLIDGHICP-ILSIPSSSIVKGDSK 129

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRDR M    K +P YGF  H GYPTA H + +   GP+  HR +FR
Sbjct: 130 VPEISAASILAKVTRDREMEALDKVFPGYGFAQHKGYPTAFHLEKLALLGPTEQHRRSFR 189

Query: 203 PLRN 206
           P+R 
Sbjct: 190 PVRR 193


>gi|312862697|ref|ZP_07722937.1| ribonuclease HII [Streptococcus vestibularis F0396]
 gi|311101557|gb|EFQ59760.1| ribonuclease HII [Streptococcus vestibularis F0396]
          Length = 256

 Score =  257 bits (657), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 81/197 (41%), Positives = 121/197 (61%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E ++  + +  +AG+DEVGRG LAGPVV AA+IL       G+NDSKKI   K E +
Sbjct: 58  LSYEKVLYAQGVELIAGVDEVGRGPLAGPVVAAAVILPKFCKIKGLNDSKKIPKSKHEAI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+++   A+ + +    +  ID  NI++AT  A+  A+ENL   P   LID  ++  DLP
Sbjct: 118 YKQVMKEAVAVGVGIKDNHVIDDVNIYEATKLAMAEAIENLSPKPEHLLIDAMTL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD++M    +++P Y F  + GY T  H   + +
Sbjct: 176 IGQTSIIKGDANSLSIAAASIVAKVTRDKMMADYDQEFPGYAFAKNAGYGTKDHLTGLDK 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR +F P++++
Sbjct: 236 FGVTPIHRRSFEPIKSI 252


>gi|56460771|ref|YP_156052.1| ribonuclease HII [Idiomarina loihiensis L2TR]
 gi|81363280|sp|Q5QZK7|RNH2_IDILO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|56179781|gb|AAV82503.1| Ribonuclease HII [Idiomarina loihiensis L2TR]
          Length = 187

 Score =  257 bits (657), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 86/183 (46%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + G DE GRG +AGPVV AA+ILDP+N   G+NDSKK+S KKRE+L  +I   A+  +I+
Sbjct: 2   ICGTDEAGRGPIAGPVVAAAVILDPDNPIEGLNDSKKLSEKKREKLSLEIKEKALYWAIA 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            +    I+  NI  A++ A+  AVE L V P   L+DG  +PE L   A A++ GD+   
Sbjct: 62  QSDPDEIEAINILWASMKAMQRAVEALPVKPDMVLVDGNRVPE-LKVPAKAIVGGDASEQ 120

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            IAAASI+AKV RDR M   H+ YP Y FD H  Y T KH +++++ GP  IHR  F P+
Sbjct: 121 CIAAASILAKVERDRQMLKWHELYPQYEFDKHKAYGTPKHLELLEKHGPCPIHRKGFNPV 180

Query: 205 RNL 207
           + L
Sbjct: 181 KRL 183


>gi|26246129|ref|NP_752168.1| ribonuclease HII [Escherichia coli CFT073]
 gi|227884904|ref|ZP_04002709.1| ribonuclease HII [Escherichia coli 83972]
 gi|300993596|ref|ZP_07180452.1| ribonuclease HII [Escherichia coli MS 45-1]
 gi|301049903|ref|ZP_07196829.1| ribonuclease HII [Escherichia coli MS 185-1]
 gi|29336711|sp|Q8FL06|RNH2_ECOL6 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|26106526|gb|AAN78712.1|AE016755_212 Ribonuclease HII [Escherichia coli CFT073]
 gi|227838042|gb|EEJ48508.1| ribonuclease HII [Escherichia coli 83972]
 gi|300298356|gb|EFJ54741.1| ribonuclease HII [Escherichia coli MS 185-1]
 gi|300406519|gb|EFJ90057.1| ribonuclease HII [Escherichia coli MS 45-1]
 gi|307552033|gb|ADN44808.1| ribonuclease HII [Escherichia coli ABU 83972]
 gi|315294587|gb|EFU53934.1| ribonuclease HII [Escherichia coli MS 153-1]
 gi|323975649|gb|EGB70745.1| ribonuclease HII [Escherichia coli TW10509]
          Length = 198

 Score =  257 bits (657), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 87/184 (47%), Positives = 111/184 (60%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L E+I   A+  S
Sbjct: 10  QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  + AV+KGDS 
Sbjct: 70  LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSR 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F 
Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFG 188

Query: 203 PLRN 206
           P++ 
Sbjct: 189 PVKR 192


>gi|283783967|ref|YP_003363832.1| ribonuclease HII [Citrobacter rodentium ICC168]
 gi|282947421|emb|CBG86966.1| ribonuclease HII [Citrobacter rodentium ICC168]
          Length = 198

 Score =  257 bits (657), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 87/184 (47%), Positives = 110/184 (59%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  LY++I   A+  S
Sbjct: 10  RLVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALYQEIKEKALSWS 69

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A    IDK NI  AT+ A+  AV  L + P   LIDG   P  LP  + AV+KGDS 
Sbjct: 70  LGRAEPHEIDKLNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPA-LPVPSMAVVKGDSR 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRD  M      +P YGF  H GYPTA H + +   G +  HR +F 
Sbjct: 129 VAEISAASILAKVTRDAEMAALDSVFPQYGFAQHKGYPTAFHLEALAAHGATEHHRRSFG 188

Query: 203 PLRN 206
           P++ 
Sbjct: 189 PVKR 192


>gi|237802463|ref|YP_002887657.1| ribonuclease HII [Chlamydia trachomatis B/Jali20/OT]
 gi|231273697|emb|CAX10475.1| ribonuclease HII [Chlamydia trachomatis B/Jali20/OT]
          Length = 217

 Score =  257 bits (657), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 88/195 (45%), Positives = 116/195 (59%), Gaps = 4/195 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E    E+    VAG+DE GRG LAGPVV  A IL    +  GI+DSKK+  K+R  LYE
Sbjct: 17  FENQAIEQGYSRVAGVDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLIPKQRRYLYE 76

Query: 74  KITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +         +   S + ID+ NI +AT +A+  A+ +LQ  P   L+DG  +P  +P 
Sbjct: 77  LLLEDPEVDCGVGVVSVERIDEINILEATKEAMVQAIASLQSTPDFLLVDGLFLPHKVP- 135

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
            +  +IKGD+ S+SIAAASIIAK  RD LMR  H +YP+YGFD H GY TA H Q +K  
Sbjct: 136 -SLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHLQALKHF 194

Query: 192 GPSCIHRLTFRPLRN 206
           GP   HR +F P++ 
Sbjct: 195 GPCVYHRKSFSPVKE 209


>gi|110640402|ref|YP_668130.1| ribonuclease HII [Escherichia coli 536]
 gi|170680885|ref|YP_001742311.1| ribonuclease HII [Escherichia coli SMS-3-5]
 gi|191172810|ref|ZP_03034347.1| ribonuclease HII [Escherichia coli F11]
 gi|215485344|ref|YP_002327775.1| ribonuclease HII [Escherichia coli O127:H6 str. E2348/69]
 gi|218688058|ref|YP_002396270.1| ribonuclease HII [Escherichia coli ED1a]
 gi|218703437|ref|YP_002410956.1| ribonuclease HII [Escherichia coli UMN026]
 gi|293403252|ref|ZP_06647349.1| rnhB [Escherichia coli FVEC1412]
 gi|298378788|ref|ZP_06988672.1| ribonuclease HII [Escherichia coli FVEC1302]
 gi|300900779|ref|ZP_07118923.1| ribonuclease HII [Escherichia coli MS 198-1]
 gi|300938590|ref|ZP_07153323.1| ribonuclease HII [Escherichia coli MS 21-1]
 gi|300984943|ref|ZP_07177208.1| ribonuclease HII [Escherichia coli MS 200-1]
 gi|306815218|ref|ZP_07449367.1| ribonuclease HII [Escherichia coli NC101]
 gi|312966320|ref|ZP_07780546.1| ribonuclease HII family protein [Escherichia coli 2362-75]
 gi|331645326|ref|ZP_08346437.1| ribonuclease HII [Escherichia coli M605]
 gi|331661254|ref|ZP_08362186.1| ribonuclease HII [Escherichia coli TA206]
 gi|331681568|ref|ZP_08382205.1| ribonuclease HII [Escherichia coli H299]
 gi|123049490|sp|Q0TLF0|RNH2_ECOL5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|226736820|sp|B7N850|RNH2_ECOLU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|226736821|sp|B1LGY5|RNH2_ECOSM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807974|sp|B7UJ84|RNH2_ECO27 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807976|sp|B7MP43|RNH2_ECO81 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|110341994|gb|ABG68231.1| ribonuclease HII [Escherichia coli 536]
 gi|170518603|gb|ACB16781.1| ribonuclease HII [Escherichia coli SMS-3-5]
 gi|190906960|gb|EDV66562.1| ribonuclease HII [Escherichia coli F11]
 gi|215263416|emb|CAS07736.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218425622|emb|CAR06408.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           ED1a]
 gi|218430534|emb|CAR11400.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           UMN026]
 gi|222032013|emb|CAP74752.1| ribonuclease HII [Escherichia coli LF82]
 gi|281177408|dbj|BAI53738.1| ribonuclease HII [Escherichia coli SE15]
 gi|284919958|emb|CBG33013.1| ribonuclease HII [Escherichia coli 042]
 gi|291430167|gb|EFF03181.1| rnhB [Escherichia coli FVEC1412]
 gi|298281122|gb|EFI22623.1| ribonuclease HII [Escherichia coli FVEC1302]
 gi|300306593|gb|EFJ61113.1| ribonuclease HII [Escherichia coli MS 200-1]
 gi|300355728|gb|EFJ71598.1| ribonuclease HII [Escherichia coli MS 198-1]
 gi|300456472|gb|EFK19965.1| ribonuclease HII [Escherichia coli MS 21-1]
 gi|305850880|gb|EFM51335.1| ribonuclease HII [Escherichia coli NC101]
 gi|309700391|emb|CBI99679.1| ribonuclease HII [Escherichia coli ETEC H10407]
 gi|312289563|gb|EFR17457.1| ribonuclease HII family protein [Escherichia coli 2362-75]
 gi|312944791|gb|ADR25618.1| ribonuclease HII [Escherichia coli O83:H1 str. NRG 857C]
 gi|320196940|gb|EFW71561.1| Ribonuclease HII [Escherichia coli WV_060327]
 gi|323190417|gb|EFZ75692.1| ribonuclease HII family protein [Escherichia coli RN587/1]
 gi|324008245|gb|EGB77464.1| ribonuclease HII [Escherichia coli MS 57-2]
 gi|324014099|gb|EGB83318.1| ribonuclease HII [Escherichia coli MS 60-1]
 gi|330910033|gb|EGH38543.1| ribonuclease H2 [Escherichia coli AA86]
 gi|331046083|gb|EGI18202.1| ribonuclease HII [Escherichia coli M605]
 gi|331052296|gb|EGI24335.1| ribonuclease HII [Escherichia coli TA206]
 gi|331081789|gb|EGI52950.1| ribonuclease HII [Escherichia coli H299]
          Length = 198

 Score =  257 bits (657), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 87/184 (47%), Positives = 111/184 (60%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L E+I   A+  S
Sbjct: 10  QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  + AV+KGDS 
Sbjct: 70  LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSR 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F 
Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFG 188

Query: 203 PLRN 206
           P++ 
Sbjct: 189 PVKR 192


>gi|237800157|ref|ZP_04588618.1| ribonuclease HII [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023014|gb|EGI03071.1| ribonuclease HII [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 217

 Score =  257 bits (657), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 89/182 (48%), Positives = 116/182 (63%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE+L+ +I   A+   I
Sbjct: 13  LVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLFVEIQEKALCWFI 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI  AT+ A+  AVE L V P+ ALIDG   P+ L   +  V+KGDS  
Sbjct: 73  ARAEVEEIDQLNILHATMLAMKRAVEGLSVTPKLALIDGNRCPQ-LSVPSAPVVKGDSKV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV+RDR M      YP YG   H GYPTA H + +   GP+ IHR +F P
Sbjct: 132 PAIAAASILAKVSRDREMAALELVYPGYGIGGHKGYPTAVHLEALARLGPTPIHRRSFGP 191

Query: 204 LR 205
           +R
Sbjct: 192 VR 193


>gi|228476746|ref|ZP_04061412.1| ribonuclease HII [Streptococcus salivarius SK126]
 gi|228251617|gb|EEK10718.1| ribonuclease HII [Streptococcus salivarius SK126]
          Length = 255

 Score =  257 bits (657), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 82/197 (41%), Positives = 121/197 (61%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  +  + +  +AG+DEVGRG LAGPVV AA+IL       G+NDSKKI   K E +
Sbjct: 58  LSYEKSLYTQGVELIAGVDEVGRGPLAGPVVAAAVILPKFCKIKGLNDSKKIPKSKHEAI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+++   A+ + I    +  ID  NI++AT  A+  A+E L+  P   LID  ++  DLP
Sbjct: 118 YKQVMKEAVAVGIGIKDNHVIDDVNIYEATKLAMVEAIEKLEPQPEHLLIDAMTL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD++M    +++P Y F  + GY T +H   I +
Sbjct: 176 IGQTSIIKGDANSLSIAAASIVAKVTRDKMMADYEQEFPGYAFAKNAGYGTKEHLSGIDK 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR +F P++++
Sbjct: 236 FGVTPIHRRSFEPIKSI 252


>gi|225180946|ref|ZP_03734394.1| Ribonuclease H [Dethiobacter alkaliphilus AHT 1]
 gi|225168427|gb|EEG77230.1| Ribonuclease H [Dethiobacter alkaliphilus AHT 1]
          Length = 260

 Score =  257 bits (657), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 96/191 (50%), Positives = 120/191 (62%), Gaps = 2/191 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            +LE   REK    +AG+DE GRG LAGPVV  A+IL  N    G+NDSKK++ +KREEL
Sbjct: 64  LKLERAAREKGFTYIAGVDEAGRGPLAGPVVAGAVILPDNFFLAGLNDSKKLTPQKREEL 123

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           YE ITS A+  S+       ID  NI +A+  A+Y A+  L V P  AL+      E+LP
Sbjct: 124 YEAITSEAVAWSVGIGEVWEIDDINILQASKLAMYRALLTLSVKPDYALL-DALELEELP 182

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                V+ GD +SLSIAAAS++AKVTRDRLM    K YP YGF  H GYPTA+H+  I +
Sbjct: 183 FAQQGVVGGDGLSLSIAAASVVAKVTRDRLMCEQEKMYPGYGFSLHKGYPTAEHRSAIAK 242

Query: 191 KGPSCIHRLTF 201
            GP  IHR +F
Sbjct: 243 LGPCPIHRKSF 253


>gi|312793164|ref|YP_004026087.1| ribonuclease h [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180304|gb|ADQ40474.1| Ribonuclease H [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 206

 Score =  257 bits (657), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 85/203 (41%), Positives = 131/203 (64%), Gaps = 4/203 (1%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           + +  +FE+E  +  +    + G+DE GRG LAGPV  AA+++D   I  G+ DSKK++ 
Sbjct: 4   LEDENYFEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKKIIEGVRDSKKLTP 63

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KKRE+L+++I   +I  S++    + ID+ NI+ AT  A+ +A+ENL++ P   L+DG  
Sbjct: 64  KKREKLFDEIIKESIAYSVAMVDSKIIDEININNATFLAMKNAIENLKIEPDIVLVDGYE 123

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           IP +L     A+IKGD  S SIA ASI+AKV+RDR +     KYP Y F+ H GY T +H
Sbjct: 124 IP-NLSFNQMAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPVYKFEKHKGYGTKEH 182

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
            +++++ GP  IHR++F  L+N+
Sbjct: 183 IEILQKYGPCEIHRISF--LKNI 203


>gi|302872177|ref|YP_003840813.1| Ribonuclease H [Caldicellulosiruptor obsidiansis OB47]
 gi|302575036|gb|ADL42827.1| Ribonuclease H [Caldicellulosiruptor obsidiansis OB47]
          Length = 206

 Score =  257 bits (657), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 85/197 (43%), Positives = 127/197 (64%), Gaps = 4/197 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           FE+E  +  +    + G+DE GRG LAGPV  AA+++D   I  G+ DSKK++ KKRE+L
Sbjct: 10  FEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREKL 69

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +E+I   +I  S++    + ID+ NI+ AT   + +A+ENL++ P   L+DG  IP +L 
Sbjct: 70  FEEIIKGSIAYSVAMVDSKIIDEININNATFLVMKNAIENLKIEPDIVLVDGYEIP-NLN 128

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               A+IKGD  S SIA ASI+AKV+RDR +     KYP Y F+ H GY T +H +++++
Sbjct: 129 FNQRAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPLYKFEKHKGYGTKEHIEILQK 188

Query: 191 KGPSCIHRLTFRPLRNL 207
            GP  IHR++F  L+N+
Sbjct: 189 YGPCEIHRISF--LKNI 203


>gi|261338819|ref|ZP_05966677.1| hypothetical protein ENTCAN_05014 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318642|gb|EFC57580.1| ribonuclease HII [Enterobacter cancerogenus ATCC 35316]
          Length = 198

 Score =  257 bits (657), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 88/183 (48%), Positives = 112/183 (61%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L+++I   A+  S+
Sbjct: 11  LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALFDEIQEKALAWSL 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID+ NI  AT+ A+  AV  L++ P   LIDG   P  LP  + AV+KGDS  
Sbjct: 71  GRAEPHEIDELNILHATMLAMQRAVAGLKITPEYVLIDGNRCPA-LPVPSMAVVKGDSRV 129

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASIIAKVTRD  M      YP YGF  H GYPTA H + + E G +  HR +F P
Sbjct: 130 PEISAASIIAKVTRDAEMAALDLTYPLYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGP 189

Query: 204 LRN 206
           ++ 
Sbjct: 190 VKR 192


>gi|90420158|ref|ZP_01228066.1| ribonuclease HII [Aurantimonas manganoxydans SI85-9A1]
 gi|90335492|gb|EAS49242.1| ribonuclease HII [Aurantimonas manganoxydans SI85-9A1]
          Length = 228

 Score =  257 bits (657), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 97/197 (49%), Positives = 124/197 (62%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  EA +       VAGIDE GRG LAGPVV AA+I    + P G+NDSKK++ + RE
Sbjct: 25  PDFSREAGLLADGKRFVAGIDEAGRGPLAGPVVTAAVIFPTRDFPDGLNDSKKLTAEDRE 84

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L+ +I +   + I+SAS   ID+ NI  ATL A+  A+  L   P   L+DGR +P  L
Sbjct: 85  RLFAEIVAKGWVGIASASADEIDRFNIRGATLIAMRRALHALPQAPCHVLVDGRDVPPAL 144

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C   AVI GD++SLSIAAASI+AKVTRDR+M  A + Y  YGF  H+GY T +H   I 
Sbjct: 145 RCAGTAVISGDALSLSIAAASIVAKVTRDRIMARACRAYEGYGFSRHMGYGTPEHLGAIA 204

Query: 190 EKGPSCIHRLTFRPLRN 206
             GP+ IHR++F PLR 
Sbjct: 205 RLGPTPIHRMSFSPLRR 221


>gi|323935023|gb|EGB31396.1| ribonuclease HII [Escherichia coli E1520]
          Length = 198

 Score =  256 bits (656), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 88/184 (47%), Positives = 111/184 (60%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L E+I   A+  S
Sbjct: 10  QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  A AV+KGDS 
Sbjct: 70  LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMAVVKGDSR 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F 
Sbjct: 129 VPEISAASILAKVTRDSEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFG 188

Query: 203 PLRN 206
           P++ 
Sbjct: 189 PVKR 192


>gi|77408047|ref|ZP_00784795.1| ribonuclease HII [Streptococcus agalactiae COH1]
 gi|77173312|gb|EAO76433.1| ribonuclease HII [Streptococcus agalactiae COH1]
          Length = 253

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 88/195 (45%), Positives = 124/195 (63%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +  +++  +AGIDEVGRG LAGPVV AA+IL PN     +NDSKKI  KK +E+Y+
Sbjct: 60  YEKKLYIEHINLIAGIDEVGRGPLAGPVVAAAVILPPNCKIKHLNDSKKIPKKKHQEIYQ 119

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   A+ + I     Q ID  NI++AT  A+  AV +L V+P   LID   +  DLP  
Sbjct: 120 NILDQALAVGIGIQDSQCIDDINIYEATKHAMIDAVSHLSVVPEHLLIDAMVL--DLPIP 177

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              +IKGD+ SLSIAAASI+AKVTRD++M     KYP + F  + GY T +H + +++ G
Sbjct: 178 QTKIIKGDANSLSIAAASIVAKVTRDKIMSDYDSKYPGFAFSKNAGYGTKEHLEGLQKYG 237

Query: 193 PSCIHRLTFRPLRNL 207
            + IHR +F P++++
Sbjct: 238 ITPIHRKSFEPIKSM 252


>gi|218547638|ref|YP_002381429.1| ribonuclease HII [Escherichia fergusonii ATCC 35469]
 gi|293418068|ref|ZP_06660690.1| ribonuclease HII [Escherichia coli B185]
 gi|331651088|ref|ZP_08352116.1| ribonuclease HII [Escherichia coli M718]
 gi|331661557|ref|ZP_08362481.1| ribonuclease HII [Escherichia coli TA143]
 gi|226736822|sp|B7LW62|RNH2_ESCF3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|218355179|emb|CAQ87786.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia
           fergusonii ATCC 35469]
 gi|291430786|gb|EFF03784.1| ribonuclease HII [Escherichia coli B185]
 gi|331051542|gb|EGI23591.1| ribonuclease HII [Escherichia coli M718]
 gi|331061472|gb|EGI33435.1| ribonuclease HII [Escherichia coli TA143]
          Length = 198

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 88/184 (47%), Positives = 111/184 (60%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L E+I   A+  S
Sbjct: 10  QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  A AV+KGDS 
Sbjct: 70  LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMAVVKGDSR 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F 
Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFG 188

Query: 203 PLRN 206
           P++ 
Sbjct: 189 PVKR 192


>gi|319943812|ref|ZP_08018093.1| ribonuclease HII [Lautropia mirabilis ATCC 51599]
 gi|319743045|gb|EFV95451.1| ribonuclease HII [Lautropia mirabilis ATCC 51599]
          Length = 199

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 82/180 (45%), Positives = 114/180 (63%), Gaps = 1/180 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DE GRG LAGPVV AA+IL P++   G+ DSKK+S ++RE L  +I   A+  +++
Sbjct: 13  IAGVDEAGRGPLAGPVVAAAVILSPDHPIEGLRDSKKLSARRRETLANEIREKALAFAVA 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS + ID+ NI  ATL A+  A++ LQ  P    IDG   P+    +   VI GD    
Sbjct: 73  SASVEEIDRLNILHATLLAMTRAIQGLQPQPLHVRIDGNRAPKLEGLRVETVIGGDDQDP 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AK  RD LM    +++P YGF+ H+GY TA H   ++E GP  IHR +F P+
Sbjct: 133 AIAAASILAKTVRDHLMLQYAEQFPAYGFERHMGYGTAVHMAALREHGPCEIHRRSFAPV 192


>gi|297617100|ref|YP_003702259.1| ribonuclease H [Syntrophothermus lipocalidus DSM 12680]
 gi|297144937|gb|ADI01694.1| Ribonuclease H [Syntrophothermus lipocalidus DSM 12680]
          Length = 222

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 86/196 (43%), Positives = 125/196 (63%), Gaps = 2/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E  +  K +  VAG DEVGRG +AGPVV AA+IL P+    G+NDSK++  KKRE L 
Sbjct: 15  EYEYGLYAKGIRLVAGTDEVGRGPIAGPVVAAAVILPPDFEVPGVNDSKQVPPKKREWLS 74

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           +KI  +A+  ++      Y+D+ NI  AT +A+  A+  L + P   ++DG  IPE L  
Sbjct: 75  DKIKENALTWAVGILFPPYLDRINILNATWEAMRLALGGLAIPPEHVIVDGWPIPE-LGV 133

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               ++KGDS+S+S+A ASI+AKV RDR+M    + YP YGF  H GY T +H + ++ K
Sbjct: 134 TQTPLVKGDSLSISVACASILAKVERDRIMTALDEVYPGYGFARHKGYATREHLRALEVK 193

Query: 192 GPSCIHRLTFRPLRNL 207
           GP  IHR++F P++++
Sbjct: 194 GPCPIHRISFEPIKSM 209


>gi|283835245|ref|ZP_06354986.1| ribonuclease HII [Citrobacter youngae ATCC 29220]
 gi|291068956|gb|EFE07065.1| ribonuclease HII [Citrobacter youngae ATCC 29220]
          Length = 198

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/184 (46%), Positives = 111/184 (60%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L+++I   A+  S+
Sbjct: 11  LVAGVDEVGRGPLVGAVVTAAVILDPARPIIGLNDSKKLSEKRRLALFDEIKEKALSWSV 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID+ NI  AT+ A+  AV  L + P   LIDG   P  LP  + AV+KGDS  
Sbjct: 71  GRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPA-LPVPSMAVVKGDSRV 129

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRD  M      +P YGF  H GYPTA H + +   G +  HR +F P
Sbjct: 130 AEISAASILAKVTRDAEMAALDTVFPQYGFAQHKGYPTAFHLEKLALHGATEHHRRSFGP 189

Query: 204 LRNL 207
           ++ +
Sbjct: 190 VKRV 193


>gi|206579509|ref|YP_002240329.1| ribonuclease HII [Klebsiella pneumoniae 342]
 gi|288937035|ref|YP_003441094.1| ribonuclease H [Klebsiella variicola At-22]
 gi|238056780|sp|B5Y1I8|RNH2_KLEP3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|206568567|gb|ACI10343.1| ribonuclease HII [Klebsiella pneumoniae 342]
 gi|288891744|gb|ADC60062.1| Ribonuclease H [Klebsiella variicola At-22]
          Length = 199

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/183 (47%), Positives = 112/183 (61%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L ++I   A+  S+
Sbjct: 11  LVAGVDEVGRGPLVGAVVTAAVILDPAKPIVGLNDSKKLSEKRRLALCDEIKEKALCWSL 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID+ NI  AT+ A+  AV  L ++P   LIDG   P  LP  + AV+KGDS  
Sbjct: 71  GRAEPHEIDELNILHATMLAMQRAVAGLSIVPEFVLIDGNRCP-SLPMPSLAVVKGDSRV 129

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRD  M      +P YGF  H GYPTA H Q ++E G +  HR +F P
Sbjct: 130 AEISAASILAKVTRDAEMATLDLAFPHYGFAQHKGYPTAVHLQKLQEHGATEHHRRSFGP 189

Query: 204 LRN 206
           ++ 
Sbjct: 190 VKR 192


>gi|315640709|ref|ZP_07895811.1| ribonuclease HII [Enterococcus italicus DSM 15952]
 gi|315483464|gb|EFU73958.1| ribonuclease HII [Enterococcus italicus DSM 15952]
          Length = 255

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 91/195 (46%), Positives = 122/195 (62%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E +   K    VAGIDEVGRG LAGPVV AA+IL P     G+NDSK++   +RE L+
Sbjct: 61  EFEKIAWSKGAQAVAGIDEVGRGPLAGPVVAAAVILPPARQFLGLNDSKQVPEAQREALF 120

Query: 73  EKITSSAIISISSA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           + I+  AI       S Q ID+ NI++A+  A+  A+E+L       LID  ++P +LP 
Sbjct: 121 QAISEQAIAIGIGIISPQCIDEVNIYEASKLAMMEAIEHLSTPADYLLIDAMTLPINLP- 179

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +IKGD+ S SIAAASIIAKVTRDR+M+    +YP Y F+ + GY TAKH   +K  
Sbjct: 180 -QEKLIKGDARSNSIAAASIIAKVTRDRMMKQYAIEYPGYDFEHNAGYGTAKHLAGLKAN 238

Query: 192 GPSCIHRLTFRPLRN 206
           G + IHR +F P++N
Sbjct: 239 GITPIHRKSFAPVKN 253


>gi|170017294|ref|YP_001728213.1| ribonuclease HII [Leuconostoc citreum KM20]
 gi|169804151|gb|ACA82769.1| Ribonuclease HII [Leuconostoc citreum KM20]
          Length = 266

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 84/197 (42%), Positives = 116/197 (58%), Gaps = 3/197 (1%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E     K +  VAG+DEVGRG LAGPVV AA+IL  +     + DSK+++  KRE+
Sbjct: 64  RFNFERDYWLKGVELVAGVDEVGRGPLAGPVVAAAVILPHDFNIVDVIDSKQVAQHKREQ 123

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LYE I   A+ I I S   + ID+ NI++A   A+  A+ NL   P++ LID   +   L
Sbjct: 124 LYEIILDQAVSIGIGSVDAKTIDEINIYEAARQAMTEAINNLAPQPQALLIDAMQVY--L 181

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                ++IKGD+ S SI AASI+AKV RD++M    K YP Y F  + GY T KH   I 
Sbjct: 182 DITQQSLIKGDARSNSIGAASIVAKVIRDKMMTDYDKVYPGYDFAQNAGYGTKKHLAGID 241

Query: 190 EKGPSCIHRLTFRPLRN 206
           + G + IHR +F+P+ +
Sbjct: 242 KLGVTPIHRRSFQPVHD 258


>gi|15799865|ref|NP_285877.1| ribonuclease HII [Escherichia coli O157:H7 EDL933]
 gi|15829439|ref|NP_308212.1| ribonuclease HII [Escherichia coli O157:H7 str. Sakai]
 gi|168752165|ref|ZP_02777187.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4113]
 gi|168758706|ref|ZP_02783713.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4401]
 gi|168764954|ref|ZP_02789961.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4501]
 gi|168769950|ref|ZP_02794957.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4486]
 gi|168777709|ref|ZP_02802716.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4196]
 gi|168782075|ref|ZP_02807082.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4076]
 gi|168789292|ref|ZP_02814299.1| ribonuclease HII [Escherichia coli O157:H7 str. EC869]
 gi|168802471|ref|ZP_02827478.1| ribonuclease HII [Escherichia coli O157:H7 str. EC508]
 gi|187731145|ref|YP_001878985.1| ribonuclease HII [Shigella boydii CDC 3083-94]
 gi|194435006|ref|ZP_03067247.1| ribonuclease HII [Shigella dysenteriae 1012]
 gi|195939879|ref|ZP_03085261.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4024]
 gi|208805984|ref|ZP_03248321.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4206]
 gi|208813645|ref|ZP_03254974.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4045]
 gi|208821027|ref|ZP_03261347.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4042]
 gi|209400402|ref|YP_002268791.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4115]
 gi|217325357|ref|ZP_03441441.1| ribonuclease HII [Escherichia coli O157:H7 str. TW14588]
 gi|218698603|ref|YP_002406232.1| ribonuclease HII [Escherichia coli IAI39]
 gi|254791316|ref|YP_003076153.1| ribonuclease HII [Escherichia coli O157:H7 str. TW14359]
 gi|261226937|ref|ZP_05941218.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255341|ref|ZP_05947874.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291281005|ref|YP_003497823.1| Ribonuclease HII [Escherichia coli O55:H7 str. CB9615]
 gi|24638183|sp|Q8X8X6|RNH2_ECO57 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|226736818|sp|B7NIE5|RNH2_ECO7I RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238056776|sp|B5Z0G2|RNH2_ECO5E RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238689501|sp|B2U326|RNH2_SHIB3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|12512911|gb|AAG54485.1|AE005194_6 RNAse HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           O157:H7 str. EDL933]
 gi|13359641|dbj|BAB33608.1| RNAse HII [Escherichia coli O157:H7 str. Sakai]
 gi|187428137|gb|ACD07411.1| ribonuclease HII [Shigella boydii CDC 3083-94]
 gi|187767120|gb|EDU30964.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4196]
 gi|188013909|gb|EDU52031.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4113]
 gi|189000369|gb|EDU69355.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4076]
 gi|189354506|gb|EDU72925.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4401]
 gi|189361051|gb|EDU79470.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4486]
 gi|189365141|gb|EDU83557.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4501]
 gi|189371107|gb|EDU89523.1| ribonuclease HII [Escherichia coli O157:H7 str. EC869]
 gi|189375551|gb|EDU93967.1| ribonuclease HII [Escherichia coli O157:H7 str. EC508]
 gi|194416742|gb|EDX32870.1| ribonuclease HII [Shigella dysenteriae 1012]
 gi|208725785|gb|EDZ75386.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4206]
 gi|208734922|gb|EDZ83609.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4045]
 gi|208741150|gb|EDZ88832.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4042]
 gi|209161802|gb|ACI39235.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4115]
 gi|209745714|gb|ACI71164.1| RNAse HII [Escherichia coli]
 gi|209745716|gb|ACI71165.1| RNAse HII [Escherichia coli]
 gi|209745718|gb|ACI71166.1| RNAse HII [Escherichia coli]
 gi|209745720|gb|ACI71167.1| RNAse HII [Escherichia coli]
 gi|209745722|gb|ACI71168.1| RNAse HII [Escherichia coli]
 gi|217321578|gb|EEC30002.1| ribonuclease HII [Escherichia coli O157:H7 str. TW14588]
 gi|218368589|emb|CAR16326.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           IAI39]
 gi|254590716|gb|ACT70077.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           O157:H7 str. TW14359]
 gi|290760878|gb|ADD54839.1| Ribonuclease HII [Escherichia coli O55:H7 str. CB9615]
 gi|320173336|gb|EFW48539.1| Ribonuclease HII [Shigella dysenteriae CDC 74-1112]
 gi|320180910|gb|EFW55832.1| Ribonuclease HII [Shigella boydii ATCC 9905]
 gi|320186605|gb|EFW61330.1| Ribonuclease HII [Shigella flexneri CDC 796-83]
 gi|320190291|gb|EFW64941.1| Ribonuclease HII [Escherichia coli O157:H7 str. EC1212]
 gi|320639989|gb|EFX09574.1| ribonuclease HII [Escherichia coli O157:H7 str. G5101]
 gi|320644759|gb|EFX13803.1| ribonuclease HII [Escherichia coli O157:H- str. 493-89]
 gi|320652915|gb|EFX21153.1| ribonuclease HII [Escherichia coli O157:H- str. H 2687]
 gi|320658303|gb|EFX26032.1| ribonuclease HII [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320663613|gb|EFX30897.1| ribonuclease HII [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668926|gb|EFX35721.1| ribonuclease HII [Escherichia coli O157:H7 str. LSU-61]
 gi|326339762|gb|EGD63570.1| Ribonuclease HII [Escherichia coli O157:H7 str. 1044]
 gi|326345096|gb|EGD68839.1| Ribonuclease HII [Escherichia coli O157:H7 str. 1125]
 gi|332095122|gb|EGJ00154.1| ribonuclease HII family protein [Shigella boydii 5216-82]
 gi|332097620|gb|EGJ02597.1| ribonuclease HII family protein [Shigella dysenteriae 155-74]
          Length = 198

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 88/184 (47%), Positives = 111/184 (60%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L E+I   A+  S
Sbjct: 10  QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  A AV+KGDS 
Sbjct: 70  LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMAVVKGDSR 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F 
Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFG 188

Query: 203 PLRN 206
           P++ 
Sbjct: 189 PVKR 192


>gi|290512456|ref|ZP_06551822.1| ribonuclease HII [Klebsiella sp. 1_1_55]
 gi|289774797|gb|EFD82799.1| ribonuclease HII [Klebsiella sp. 1_1_55]
          Length = 198

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/183 (47%), Positives = 112/183 (61%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L ++I   A+  S+
Sbjct: 10  LVAGVDEVGRGPLVGAVVTAAVILDPAKPIVGLNDSKKLSEKRRLALCDEIKEKALCWSL 69

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID+ NI  AT+ A+  AV  L ++P   LIDG   P  LP  + AV+KGDS  
Sbjct: 70  GRAEPHEIDELNILHATMLAMQRAVAGLSIVPEFVLIDGNRCP-SLPMPSLAVVKGDSRV 128

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRD  M      +P YGF  H GYPTA H Q ++E G +  HR +F P
Sbjct: 129 AEISAASILAKVTRDAEMATLDLAFPHYGFAQHKGYPTAVHLQKLQEHGATEHHRRSFGP 188

Query: 204 LRN 206
           ++ 
Sbjct: 189 VKR 191


>gi|172057903|ref|YP_001814363.1| ribonuclease H [Exiguobacterium sibiricum 255-15]
 gi|171990424|gb|ACB61346.1| Ribonuclease H [Exiguobacterium sibiricum 255-15]
          Length = 250

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 84/191 (43%), Positives = 117/191 (61%), Gaps = 4/191 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E   R +    +AG+DEVGRG LAGPVV AA+IL       G+ DSK++S K+R   Y+
Sbjct: 60  FEDRYRAQGHQRIAGVDEVGRGPLAGPVVAAAVILPAGFYHPGLTDSKQMSKKQRSAAYQ 119

Query: 74  KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
            I   A ++I     + ID+ NI++A+  A+  AV  L   P + L+D  ++  DLP   
Sbjct: 120 HIQEVAEVAIGIIEPEEIDRINIYQASKQAMQQAVAQL--TPDALLVDAMTLDVDLP--Q 175

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++IKGD+ S+SIAAAS+IAK TRD +M      YP+YGFD H GY TA+H Q +   G 
Sbjct: 176 ESLIKGDARSVSIAAASVIAKETRDTMMEQYAVLYPEYGFDQHAGYGTAQHLQALDRVGV 235

Query: 194 SCIHRLTFRPL 204
           + IHR TF+P+
Sbjct: 236 TPIHRKTFKPV 246


>gi|189043613|sp|A5EEC1|RNH2_BRASB RecName: Full=Ribonuclease HII; Short=RNase HII
          Length = 289

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 1/195 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E  + ++ +WPVAG DE GRG LAGPVV AA+ILDPN IP G++DSK++S ++RE
Sbjct: 62  PSFRRERALLKQGIWPVAGCDEAGRGPLAGPVVAAAVILDPNRIPKGLDDSKRLSAEQRE 121

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L++KI  ++  +++ AS   ID+ NI +A+L A+  AV  L   P+   +DGR    D+
Sbjct: 122 ALFDKICKTSAFAVAFASPARIDRDNILRASLWALSRAVRALPEAPKHVFVDGRD-RIDV 180

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C   AVI GD + +SIAAASI+AKVTRDRLM    +  P YGF+ H GY   +H   + 
Sbjct: 181 DCHCEAVIGGDGLVMSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYGVPEHLAALD 240

Query: 190 EKGPSCIHRLTFRPL 204
             GPS  HR  F P+
Sbjct: 241 RLGPSVHHRSLFAPV 255


>gi|294140018|ref|YP_003555996.1| ribonuclease HII [Shewanella violacea DSS12]
 gi|293326487|dbj|BAJ01218.1| ribonuclease HII [Shewanella violacea DSS12]
          Length = 218

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 90/191 (47%), Positives = 119/191 (62%), Gaps = 8/191 (4%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
              AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK+S KKRE L+ +I   A+ IS
Sbjct: 18  GLYAGVDEVGRGPLVGNVVTAAVILDPNNPILGLNDSKKLSEKKREALFTEIHEKALSIS 77

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-------EDLPCQAFA 135
           +  AS + ID+ NI  AT+ A+  AV  L++ P   L+DG   P        +L  +A A
Sbjct: 78  VGHASPEEIDELNILHATMLAMQRAVAGLEIKPVKVLVDGNRTPIFHHGDNTELAIEAHA 137

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           ++KGD +   I+AASIIAKV RDR M +   ++P YGF  H GYPT  H Q +++ G   
Sbjct: 138 IVKGDGLIAGISAASIIAKVIRDREMELLDMEHPQYGFAKHKGYPTKAHFQALEQHGVLA 197

Query: 196 IHRLTFRPLRN 206
            HR +FRP+R 
Sbjct: 198 EHRKSFRPVRE 208


>gi|325262275|ref|ZP_08129012.1| ribonuclease HII [Clostridium sp. D5]
 gi|324032107|gb|EGB93385.1| ribonuclease HII [Clostridium sp. D5]
          Length = 254

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 95/203 (46%), Positives = 124/203 (61%), Gaps = 8/203 (3%)

Query: 11  HFELEAMVREK----NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
              LE M R +        + GIDEVGRG LAGPVV  A+IL  +     INDSKK+S K
Sbjct: 53  RLRLEQMKRYEKKYDEHTFICGIDEVGRGPLAGPVVAGAVILPKDCEILYINDSKKLSAK 112

Query: 67  KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           KREELY++I   A+   I  AS   IDK NI +AT +A+  AV+ L+  P   L D  +I
Sbjct: 113 KREELYDEIMDKAVATGIGMASPARIDKINILQATYEAMRIAVQELKTAPTLLLNDAVTI 172

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  +      +IKGD+ S+SIAAASIIAKVTRDRLM    K  P YGF  + GY +A H 
Sbjct: 173 P-GITLPQVPIIKGDAKSVSIAAASIIAKVTRDRLMLEYDKILPGYGFAENKGYGSAAHI 231

Query: 186 QVIKEKGPSCIHRLTFRPLRNLS 208
           + +K+ GP+ IHR++F  ++N +
Sbjct: 232 EALKKMGPTPIHRVSF--IKNFA 252


>gi|255067201|ref|ZP_05319056.1| ribonuclease HII [Neisseria sicca ATCC 29256]
 gi|255048569|gb|EET44033.1| ribonuclease HII [Neisseria sicca ATCC 29256]
          Length = 197

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 80/188 (42%), Positives = 110/188 (58%), Gaps = 1/188 (0%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           KN + +AG+DE GRG L G V  AA+IL P+    G+ DSKK+S KKR+ L   I   A+
Sbjct: 2   KNSFLIAGVDEAGRGPLVGSVFAAAVILPPSYHLPGLTDSKKLSEKKRDTLAVLIKEQAL 61

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
              ++ A  Q I + NI  AT+ A+  AV  L + P    IDG  +P+ L   A AV+KG
Sbjct: 62  AWCVAQADPQEIFELNILHATMLAMSRAVHGLAIKPDKVFIDGNRVPKALGVDAEAVVKG 121

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DS  + I+AAS++AK  RD  M    ++YP YGFD H GY TA+H + ++  G    HR 
Sbjct: 122 DSKIMEISAASVLAKTARDAEMYALAERYPQYGFDKHKGYGTAQHLEALQRYGVLPEHRR 181

Query: 200 TFRPLRNL 207
            F P++ L
Sbjct: 182 DFAPVKAL 189


>gi|50084434|ref|YP_045944.1| ribonuclease HII [Acinetobacter sp. ADP1]
 gi|73917594|sp|Q6FCT7|RNH2_ACIAD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|49530410|emb|CAG68122.1| RNAse HII [Acinetobacter sp. ADP1]
          Length = 189

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 84/182 (46%), Positives = 118/182 (64%), Gaps = 1/182 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DE GRG L G VV AA+ILDP+N   G+NDSKK++ KKRE+L+ +I   A+  SI+
Sbjct: 2   IAGVDEAGRGPLVGSVVAAAVILDPHNPIDGLNDSKKLTEKKREKLFVEIQEKALAWSIA 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A+H  ID+ NI +AT  A+  AV+ LQ+ P   L+DG  IP+ +     A++ GD+   
Sbjct: 62  EANHIEIDELNILQATFLAMRRAVDGLQIQPDKVLVDGNQIPKGISIHCEAIVGGDASHA 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKV RD+ M++  +KYP +GF  H GYPT  H Q I   G    HR ++ P+
Sbjct: 122 EISAASILAKVYRDQQMKLLDEKYPLFGFAKHKGYPTKAHFQAIAIHGVVDEHRRSYAPV 181

Query: 205 RN 206
           R 
Sbjct: 182 RR 183


>gi|16759220|ref|NP_454837.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|16763620|ref|NP_459235.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29140770|ref|NP_804112.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56412503|ref|YP_149578.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|167990117|ref|ZP_02571217.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168230539|ref|ZP_02655597.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168244998|ref|ZP_02669930.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|194442556|ref|YP_002039470.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194447841|ref|YP_002044220.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194469389|ref|ZP_03075373.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|197262827|ref|ZP_03162901.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197361438|ref|YP_002141074.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|198243184|ref|YP_002214191.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|200388767|ref|ZP_03215379.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|207855748|ref|YP_002242399.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213163685|ref|ZP_03349395.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
 gi|213418465|ref|ZP_03351531.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
 gi|213425956|ref|ZP_03358706.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213580323|ref|ZP_03362149.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
 gi|213648458|ref|ZP_03378511.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
 gi|238911296|ref|ZP_04655133.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289825702|ref|ZP_06544870.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|61234136|sp|P0A2C1|RNH2_SALTY RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|61234141|sp|P0A2C2|RNH2_SALTI RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|73917833|sp|Q5PD71|RNH2_SALPA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238689913|sp|B5BAP0|RNH2_SALPK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238690313|sp|B5FJ30|RNH2_SALDC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238690458|sp|B5R422|RNH2_SALEP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238690680|sp|B4TK58|RNH2_SALHS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238693524|sp|B4SV12|RNH2_SALNS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|25289252|pir||AH0530 ribonuclease HII [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16418735|gb|AAL19194.1| RNAse HII [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16501511|emb|CAD08688.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29136394|gb|AAO67961.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56126760|gb|AAV76266.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|194401219|gb|ACF61441.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194406145|gb|ACF66364.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194455753|gb|EDX44592.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|197092914|emb|CAR58343.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197241082|gb|EDY23702.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197937700|gb|ACH75033.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199605865|gb|EDZ04410.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205331449|gb|EDZ18213.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205335176|gb|EDZ21940.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205336201|gb|EDZ22965.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|206707551|emb|CAR31825.1| Ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|261245462|emb|CBG23252.1| RNase HII [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|267991921|gb|ACY86806.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301156857|emb|CBW16333.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312911200|dbj|BAJ35174.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321222186|gb|EFX47258.1| Ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323128550|gb|ADX15980.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|326621934|gb|EGE28279.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
 gi|332987182|gb|AEF06165.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 198

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/183 (47%), Positives = 112/183 (61%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  LY++I   A+  S+
Sbjct: 11  LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLSLYDEIKEKALSWSL 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID+ NI  AT+ A+  AV  L + P   LIDG   PE LP  + AV+KGDS  
Sbjct: 71  GRAEAHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPE-LPVPSMAVVKGDSRV 129

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + + G +  HR +F P
Sbjct: 130 AEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAQYGATAHHRRSFAP 189

Query: 204 LRN 206
           ++ 
Sbjct: 190 VKR 192


>gi|301155660|emb|CBW15128.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Haemophilus
           parainfluenzae T3T1]
          Length = 200

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/187 (45%), Positives = 115/187 (61%), Gaps = 1/187 (0%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +     AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S KKR  L  +I   A+
Sbjct: 8   EGYQLFAGVDEVGRGPLVGAVVTAAVILDPNNPIAGLADSKKLSEKKRLALAAEIKEKAL 67

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             ++  A    ID+ NI  A++ A+  AV+ L++ P   L+DG  IP +L   A AV+KG
Sbjct: 68  AWAMGRAEPAEIDELNILHASMLAMERAVKALEIQPHFVLVDGNRIPPNLSLPAQAVVKG 127

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DS+   I+AASI+AKV RD+ M    KKYP+Y F  H GYPT  H + + E GP   +R 
Sbjct: 128 DSLVAEISAASILAKVARDQEMEELDKKYPEYAFAQHKGYPTKLHLEKLAELGPLPEYRR 187

Query: 200 TFRPLRN 206
           +F P++ 
Sbjct: 188 SFSPVKK 194


>gi|88857963|ref|ZP_01132605.1| RNAse HII [Pseudoalteromonas tunicata D2]
 gi|88819580|gb|EAR29393.1| RNAse HII [Pseudoalteromonas tunicata D2]
          Length = 194

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 81/187 (43%), Positives = 114/187 (60%), Gaps = 2/187 (1%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
           N   +AG+DEVGRG L G VV AA+ILDP     G+ DSKK++ KKR+ L  +I   A+ 
Sbjct: 7   NYQFIAGVDEVGRGPLVGDVVTAAVILDPTKPIVGLADSKKLTDKKRQALAIEIKEKALC 66

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             I+ AS   ID+ NI  AT+ A+  AV  L +      +DG  +P+ L   A AV+KGD
Sbjct: 67  YCIARASVAEIDELNILHATMLAMTRAVAGLSIPAEFVFVDGNRLPK-LSVPAQAVVKGD 125

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S+   I+AASI+AKV RD  M     ++P+YGF  H GYPT  H + +++ G +  HR +
Sbjct: 126 SLVAEISAASILAKVARDDEMIALDAQFPEYGFAGHKGYPTKAHLEALQQHGVTEHHRKS 185

Query: 201 FRPLRNL 207
           F+P++ L
Sbjct: 186 FKPVKIL 192


>gi|324112406|gb|EGC06383.1| ribonuclease HII [Escherichia fergusonii B253]
 gi|325496115|gb|EGC93974.1| ribonuclease HII [Escherichia fergusonii ECD227]
          Length = 198

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/183 (47%), Positives = 111/183 (60%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L E+I   A+  S+
Sbjct: 11  LVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSL 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  + AV+KGDS  
Sbjct: 71  GRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSRV 129

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F P
Sbjct: 130 PEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGP 189

Query: 204 LRN 206
           ++ 
Sbjct: 190 VKR 192


>gi|91209253|ref|YP_539239.1| ribonuclease HII [Escherichia coli UTI89]
 gi|117622468|ref|YP_851381.1| ribonuclease HII [Escherichia coli APEC O1]
 gi|218557124|ref|YP_002390037.1| ribonuclease HII [Escherichia coli S88]
 gi|237704342|ref|ZP_04534823.1| ribonuclease HII [Escherichia sp. 3_2_53FAA]
 gi|122424950|sp|Q1RG06|RNH2_ECOUT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166225184|sp|A1A7M7|RNH2_ECOK1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|226736817|sp|B7MBG4|RNH2_ECO45 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|91070827|gb|ABE05708.1| RNAse HII, degrades RNA of DNA-RNA hybrids [Escherichia coli UTI89]
 gi|115511592|gb|ABI99666.1| ribonuclease HII [Escherichia coli APEC O1]
 gi|218363893|emb|CAR01558.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           S88]
 gi|226902254|gb|EEH88513.1| ribonuclease HII [Escherichia sp. 3_2_53FAA]
 gi|294490169|gb|ADE88925.1| ribonuclease HII [Escherichia coli IHE3034]
 gi|307629759|gb|ADN74063.1| ribonuclease HII [Escherichia coli UM146]
 gi|315285250|gb|EFU44695.1| ribonuclease HII [Escherichia coli MS 110-3]
 gi|323950818|gb|EGB46695.1| ribonuclease HII [Escherichia coli H252]
 gi|323955144|gb|EGB50919.1| ribonuclease HII [Escherichia coli H263]
          Length = 198

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/184 (47%), Positives = 111/184 (60%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L E+I   A+  S
Sbjct: 10  QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLVLCEEIKEKALSWS 69

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  + AV+KGDS 
Sbjct: 70  LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSR 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F 
Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFG 188

Query: 203 PLRN 206
           P++ 
Sbjct: 189 PVKR 192


>gi|89098661|ref|ZP_01171543.1| ribonuclease HII [Bacillus sp. NRRL B-14911]
 gi|89086623|gb|EAR65742.1| ribonuclease HII [Bacillus sp. NRRL B-14911]
          Length = 255

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 84/195 (43%), Positives = 121/195 (62%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +++     +AG DE GRG LAGPV+ AA+IL       G++DSKK+S  KR+E Y+
Sbjct: 62  FERRLKKSGWTMIAGTDEAGRGPLAGPVIAAAVILPEGFYLPGLDDSKKLSEAKRDEFYK 121

Query: 74  KITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I S A  + I   S   ID+ NI +A+  A+  A+ ++   P   L D   +  D+P Q
Sbjct: 122 EIMSGASAVGIGRISAGEIDRINILQASKKAMLLALADMGSTPDYLLTDAVDL--DVPYQ 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
           A AVIKGDS S++IAAAS+IAKVTRDR MR   ++YP YGF  ++GY T +H + I++ G
Sbjct: 180 AEAVIKGDSKSVTIAAASVIAKVTRDRYMRELDEQYPHYGFGRNMGYGTRQHLEAIEKHG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++ +
Sbjct: 240 IINEHRKSFAPIKGM 254


>gi|295098672|emb|CBK87762.1| RNase HII [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 198

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 88/183 (48%), Positives = 112/183 (61%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L+++I   A+  S+
Sbjct: 11  LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALFDEIKEKALAWSL 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID  NI  AT+ A+  AV  L+++P   LIDG   P  LP  + AV+KGDS  
Sbjct: 71  GRAEPDEIDDLNILHATMLAMQRAVAGLKIVPEYVLIDGNRCPA-LPMPSMAVVKGDSRV 129

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASIIAKVTRD  M      YP YGF  H GYPTA H + + E G +  HR +F P
Sbjct: 130 AEISAASIIAKVTRDAEMAALDLTYPAYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGP 189

Query: 204 LRN 206
           ++ 
Sbjct: 190 VKR 192


>gi|148253836|ref|YP_001238421.1| ribonuclease HII [Bradyrhizobium sp. BTAi1]
 gi|146406009|gb|ABQ34515.1| RNase HII [Bradyrhizobium sp. BTAi1]
          Length = 292

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 1/195 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E  + ++ +WPVAG DE GRG LAGPVV AA+ILDPN IP G++DSK++S ++RE
Sbjct: 65  PSFRRERALLKQGIWPVAGCDEAGRGPLAGPVVAAAVILDPNRIPKGLDDSKRLSAEQRE 124

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L++KI  ++  +++ AS   ID+ NI +A+L A+  AV  L   P+   +DGR    D+
Sbjct: 125 ALFDKICKTSAFAVAFASPARIDRDNILRASLWALSRAVRALPEAPKHVFVDGRD-RIDV 183

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C   AVI GD + +SIAAASI+AKVTRDRLM    +  P YGF+ H GY   +H   + 
Sbjct: 184 DCHCEAVIGGDGLVMSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYGVPEHLAALD 243

Query: 190 EKGPSCIHRLTFRPL 204
             GPS  HR  F P+
Sbjct: 244 RLGPSVHHRSLFAPV 258


>gi|319744987|gb|EFV97315.1| ribonuclease HII [Streptococcus agalactiae ATCC 13813]
          Length = 254

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 89/209 (42%), Positives = 125/209 (59%), Gaps = 7/209 (3%)

Query: 4   NSIPERPHFE----LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIND 59
           + + E    E     E  +  +++  +AGIDEVGRG LAGPVV AA+IL PN     +ND
Sbjct: 47  SDLDEEARLEQMLVYEKKLYIEHINLIAGIDEVGRGPLAGPVVAAAVILPPNCKIKHLND 106

Query: 60  SKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118
           SKKI  KK +E+Y+ I   A+ + I     Q ID  NI++AT  A+  AV +L V P   
Sbjct: 107 SKKIPKKKHQEIYQNILDQALAVGIGIQDSQCIDDINIYEATKHAMIDAVSHLSVAPEHL 166

Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
           LID   +  DL      +IKGD+ SLSIAAASI+AKVTRD++M      YP Y F  + G
Sbjct: 167 LIDAMVL--DLSIPQTKIIKGDANSLSIAAASIVAKVTRDKIMSDYDSTYPGYAFSKNAG 224

Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           Y T +H + +++ G + IHR +F P++++
Sbjct: 225 YGTKEHLEGLQKYGITPIHRKSFEPIKSM 253


>gi|189043614|sp|A4YPP8|RNH2_BRASO RecName: Full=Ribonuclease HII; Short=RNase HII
          Length = 277

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 1/195 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E  + ++ +WPVAG DE GRG LAGPVV AA+ILDPN IP G++DSK++S ++RE
Sbjct: 50  PSFRRERALLKQGIWPVAGCDEAGRGPLAGPVVAAAVILDPNRIPKGLDDSKRLSAEQRE 109

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L++KI  ++  +++ AS   ID+ NI +A+L A+  AV  L   P+   +DGR    D+
Sbjct: 110 ALFDKICKTSAFAVAYASPTRIDRDNILRASLWALSRAVRALPEAPKHVFVDGRD-RIDV 168

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C   AVI GD + +SIAAASI+AKVTRDRLM    +  P YGF+ H GY   +H   + 
Sbjct: 169 DCNCEAVIGGDGLVMSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYAVPEHLAALD 228

Query: 190 EKGPSCIHRLTFRPL 204
             GPS  HR  F P+
Sbjct: 229 RLGPSVHHRSLFAPV 243


>gi|22537172|ref|NP_688023.1| ribonuclease HII [Streptococcus agalactiae 2603V/R]
 gi|25011101|ref|NP_735496.1| ribonuclease HII [Streptococcus agalactiae NEM316]
 gi|76798272|ref|ZP_00780520.1| ribonuclease HII [Streptococcus agalactiae 18RS21]
 gi|77410447|ref|ZP_00786808.1| ribonuclease HII [Streptococcus agalactiae CJB111]
 gi|77413753|ref|ZP_00789934.1| ribonuclease HII [Streptococcus agalactiae 515]
 gi|39932400|sp|Q8DZT5|RNH2_STRA5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|39932402|sp|Q8E5I2|RNH2_STRA3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|22534036|gb|AAM99895.1|AE014238_8 ribonuclease HII [Streptococcus agalactiae 2603V/R]
 gi|23095500|emb|CAD46706.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76586383|gb|EAO62893.1| ribonuclease HII [Streptococcus agalactiae 18RS21]
 gi|77160182|gb|EAO71312.1| ribonuclease HII [Streptococcus agalactiae 515]
 gi|77163395|gb|EAO74345.1| ribonuclease HII [Streptococcus agalactiae CJB111]
          Length = 253

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 89/209 (42%), Positives = 125/209 (59%), Gaps = 7/209 (3%)

Query: 4   NSIPERPHFE----LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIND 59
           + + E    E     E  +  +++  +AGIDEVGRG LAGPVV AA+IL PN     +ND
Sbjct: 46  SDLDEEARLEQMLVYEKKLYIEHINLIAGIDEVGRGPLAGPVVAAAVILPPNCKIKHLND 105

Query: 60  SKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118
           SKKI  KK +E+Y+ I   A+ + I     Q ID  NI++AT  A+  AV +L V P   
Sbjct: 106 SKKIPKKKHQEIYQNILDQALAVGIGIQDSQCIDDINIYEATKHAMIDAVSHLSVAPEHL 165

Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
           LID   +  DL      +IKGD+ SLSIAAASI+AKVTRD++M      YP Y F  + G
Sbjct: 166 LIDAMVL--DLSIPQTKIIKGDANSLSIAAASIVAKVTRDKIMSDYDSTYPGYAFSKNAG 223

Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           Y T +H + +++ G + IHR +F P++++
Sbjct: 224 YGTKEHLEGLQKYGITPIHRKSFEPIKSM 252


>gi|260596603|ref|YP_003209174.1| ribonuclease HII [Cronobacter turicensis z3032]
 gi|260215780|emb|CBA28205.1| Ribonuclease HII [Cronobacter turicensis z3032]
          Length = 198

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 89/183 (48%), Positives = 111/183 (60%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP N   G+ DSKK+S K+R  L+++I   AI  S+
Sbjct: 11  LVAGVDEVGRGPLVGAVVTAAVILDPLNPIVGLADSKKLSEKRRLALFDEIKEKAIAWSL 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID+ NI  AT+ A+  AV  L V P   LIDG   P  LP  + AV+KGDS  
Sbjct: 71  GRAEPHEIDELNILHATMLAMQRAVAGLAVTPEYVLIDGNRCPA-LPMPSMAVVKGDSRV 129

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F P
Sbjct: 130 AEISAASILAKVTRDAEMAELDLTFPQYGFAQHKGYPTAFHLERLAEHGATAHHRRSFAP 189

Query: 204 LRN 206
           +R 
Sbjct: 190 VRR 192


>gi|189043612|sp|B1MZ17|RNH2_LEUCK RecName: Full=Ribonuclease HII; Short=RNase HII
          Length = 260

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/197 (42%), Positives = 116/197 (58%), Gaps = 3/197 (1%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E     K +  VAG+DEVGRG LAGPVV AA+IL  +     + DSK+++  KRE+
Sbjct: 58  RFNFERDYWLKGVELVAGVDEVGRGPLAGPVVAAAVILPHDFNIVDVIDSKQVAQHKREQ 117

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LYE I   A+ I I S   + ID+ NI++A   A+  A+ NL   P++ LID   +   L
Sbjct: 118 LYEIILDQAVSIGIGSVDAKTIDEINIYEAARQAMTEAINNLAPQPQALLIDAMQVY--L 175

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                ++IKGD+ S SI AASI+AKV RD++M    K YP Y F  + GY T KH   I 
Sbjct: 176 DITQQSLIKGDARSNSIGAASIVAKVIRDKMMTDYDKVYPGYDFAQNAGYGTKKHLAGID 235

Query: 190 EKGPSCIHRLTFRPLRN 206
           + G + IHR +F+P+ +
Sbjct: 236 KLGVTPIHRRSFQPVHD 252


>gi|313892676|ref|ZP_07826259.1| ribonuclease HII [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442767|gb|EFR61176.1| ribonuclease HII [Veillonella sp. oral taxon 158 str. F0412]
          Length = 265

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/197 (44%), Positives = 131/197 (66%), Gaps = 2/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           ++ E M  ++ M+ VAG+DEVGRG +AGPV VAA+IL P  +  G+NDSKK++ +KRE L
Sbjct: 63  YDYEGMFYDQGMYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREVL 122

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I   A+ +S  S   + ID+ NI++AT  A+Y A+  L V   + + D   +P DL 
Sbjct: 123 YDIIMKEAVAVSCISYGPEKIDELNIYEATRQAMYEAIRTLSVPAEAVVADAMKLP-DLT 181

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGDS S +IA ASIIAKVTRDR M+   ++YP YGF  H GY T  H++ +++
Sbjct: 182 IPVESIIKGDSKSANIAVASIIAKVTRDRYMKQLDEEYPGYGFGIHKGYYTELHKEAVEQ 241

Query: 191 KGPSCIHRLTFRPLRNL 207
           +G + +HR +F P++++
Sbjct: 242 QGVTPLHRKSFEPIKSI 258


>gi|269836504|ref|YP_003318732.1| Ribonuclease H [Sphaerobacter thermophilus DSM 20745]
 gi|269785767|gb|ACZ37910.1| Ribonuclease H [Sphaerobacter thermophilus DSM 20745]
          Length = 233

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 88/200 (44%), Positives = 126/200 (63%), Gaps = 3/200 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKR 68
           P   +EA +  + +  VAG+DEVGRG +AGPVV AA IL P      G+ DSK +S ++R
Sbjct: 25  PSIHIEAELWARGLRLVAGVDEVGRGCVAGPVVAAACILPPGIEDIPGVRDSKTLSARQR 84

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E L E+I   A+ I + +AS + ID++NI +A+  A+  A+  L       L DGR +PE
Sbjct: 85  ERLAEEIRRVALGIGLGAASRREIDQYNIRQASALAMRRALARLGAW-DFVLYDGRPLPE 143

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
             P +  AV+KGD+  LSIA ASI+AKVTRD LM    +++P+YG++ + GY TA+H   
Sbjct: 144 LDPERTMAVVKGDASCLSIACASILAKVTRDALMARLARRHPEYGWERNAGYGTAEHLDA 203

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           +   GP+  HR TF P+R+L
Sbjct: 204 LLRVGPTPHHRRTFAPVRDL 223


>gi|146339063|ref|YP_001204111.1| ribonuclease HII [Bradyrhizobium sp. ORS278]
 gi|146191869|emb|CAL75874.1| Ribonuclease HII [Bradyrhizobium sp. ORS278]
          Length = 289

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 1/195 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E  + ++ +WPVAG DE GRG LAGPVV AA+ILDPN IP G++DSK++S ++RE
Sbjct: 62  PSFRRERALLKQGIWPVAGCDEAGRGPLAGPVVAAAVILDPNRIPKGLDDSKRLSAEQRE 121

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L++KI  ++  +++ AS   ID+ NI +A+L A+  AV  L   P+   +DGR    D+
Sbjct: 122 ALFDKICKTSAFAVAYASPTRIDRDNILRASLWALSRAVRALPEAPKHVFVDGRD-RIDV 180

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C   AVI GD + +SIAAASI+AKVTRDRLM    +  P YGF+ H GY   +H   + 
Sbjct: 181 DCNCEAVIGGDGLVMSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYAVPEHLAALD 240

Query: 190 EKGPSCIHRLTFRPL 204
             GPS  HR  F P+
Sbjct: 241 RLGPSVHHRSLFAPV 255


>gi|322373051|ref|ZP_08047587.1| ribonuclease HII [Streptococcus sp. C150]
 gi|321278093|gb|EFX55162.1| ribonuclease HII [Streptococcus sp. C150]
          Length = 260

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/197 (42%), Positives = 120/197 (60%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  +  + +  +AG+DEVGRG LAGPVV AA+IL       G+NDSKKI   K E +
Sbjct: 63  LSYEKSLYAQGVELIAGVDEVGRGPLAGPVVAAAVILPKLCKIKGLNDSKKIPKSKHEAI 122

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+++   A+ + I    +  ID  NI++AT  A+  A+E L   P   LID  S+  DLP
Sbjct: 123 YKQVMKEAVAVGIGIKDNHVIDDVNIYEATKLAMAEAIEKLSPKPEHLLIDAMSL--DLP 180

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD++M    +++P Y FD + GY T  H   I +
Sbjct: 181 IGQTSIIKGDANSLSIAAASIVAKVTRDKMMADYDQEFPGYAFDQNAGYGTKNHLSGIDK 240

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR +F P++++
Sbjct: 241 FGVTPIHRRSFEPIKSI 257


>gi|225019936|ref|ZP_03709128.1| hypothetical protein CLOSTMETH_03890 [Clostridium methylpentosum
           DSM 5476]
 gi|224947300|gb|EEG28509.1| hypothetical protein CLOSTMETH_03890 [Clostridium methylpentosum
           DSM 5476]
          Length = 324

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/184 (47%), Positives = 114/184 (61%), Gaps = 2/184 (1%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78
           RE     + G+DE GRG LAGPV  AA IL  +    GINDSKK++ KKRE LYE+I   
Sbjct: 8   REAGAEVLCGVDEAGRGPLAGPVYAAACILPLDAEIEGINDSKKLTEKKREALYEQIRER 67

Query: 79  AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137
           A+   +++AS + ID  NI +AT  A+  AVE L++ P   LIDG   P D+   +  VI
Sbjct: 68  ALDYCVATASVEEIDSINILQATFLAMRRAVEGLRLRPGLVLIDGNKNP-DVGVHSRCVI 126

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGD+ S +IAAASI+AKV RDR M+    +YP+Y F  H GY T  H + + E G S +H
Sbjct: 127 KGDATSANIAAASILAKVERDRCMQALDAEYPEYCFAKHKGYGTKLHTEKLLEYGISPVH 186

Query: 198 RLTF 201
           R +F
Sbjct: 187 RRSF 190


>gi|261866967|ref|YP_003254889.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412299|gb|ACX81670.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 199

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/195 (41%), Positives = 117/195 (60%), Gaps = 1/195 (0%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
           ++     +    +AG+DEVGRG L G VV AA+ILDP     G+ DSK +S KKR  L E
Sbjct: 1   MDKFTYPQGYELIAGVDEVGRGPLVGAVVTAAVILDPKQPIEGLADSKTLSEKKRLLLAE 60

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   A+  ++  A    ID+ NI  A++ A+  A+++L++ P   L+DG  IP +L   
Sbjct: 61  EIKQKALAWALGRAEPHEIDELNILHASMLAMERAIKHLKIRPHFVLVDGNRIPPNLMIP 120

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
           A AV+KGD +   I+AASI+AKV RD+ M +  KKYP Y F  H GYPT  H + ++E G
Sbjct: 121 AQAVVKGDVLVPEISAASILAKVARDQEMIVLDKKYPHYAFAKHKGYPTKLHLEKLREFG 180

Query: 193 PSCIHRLTFRPLRNL 207
               +R +F P++ L
Sbjct: 181 VLPEYRRSFAPVKKL 195


>gi|291563277|emb|CBL42093.1| Ribonuclease HII [butyrate-producing bacterium SS3/4]
          Length = 214

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 85/195 (43%), Positives = 115/195 (58%), Gaps = 2/195 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           ER     E   + ++   + GIDE GRG LAGPV   A IL  +     +NDSKK+S  +
Sbjct: 16  ERLSLMREFERQYEDCAFICGIDEAGRGPLAGPVAAGAAILPKDCRILYLNDSKKLSESR 75

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           REEL+ +I   AI  S+     + ID+ NI +AT +A+  A+  L  +P+  L D  +IP
Sbjct: 76  REELFLEIKEKAIAWSVGIVGPERIDEINILQATYEAMRQAISKLDPVPQVLLNDAVTIP 135

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             +      +IKGD+ S+SIAAASI+AKVTRD +M    K+YP+YGF  H GY T  H  
Sbjct: 136 -GVAIPQVPIIKGDAKSVSIAAASILAKVTRDHMMEEYDKEYPEYGFAKHKGYGTPAHIT 194

Query: 187 VIKEKGPSCIHRLTF 201
            +KE GP+ IHR TF
Sbjct: 195 ALKEFGPTPIHRRTF 209


>gi|313904190|ref|ZP_07837569.1| Ribonuclease H [Eubacterium cellulosolvens 6]
 gi|313470992|gb|EFR66315.1| Ribonuclease H [Eubacterium cellulosolvens 6]
          Length = 218

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 91/190 (47%), Positives = 118/190 (62%), Gaps = 4/190 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E    E     + G+DEVGRG LAGPV  AA+IL  +     INDSKK+S K+REELY
Sbjct: 27  EFEKAHPEAEY--ICGVDEVGRGPLAGPVTTAAVILPKDARILYINDSKKLSEKRREELY 84

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           + I   AI +S+   S + ID+ NI +ATL+++  +V  L V P    +D  +IP  +  
Sbjct: 85  DIIMEEAIAVSVKLNSWERIDEINILQATLESMRESVNTLDVRPDLVFVDAVTIP-GIDI 143

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +IKGD+ S SIAAASIIAKVTRDR+M+   + YP Y F S+ GY T KH + +KE 
Sbjct: 144 PQIPIIKGDAKSQSIAAASIIAKVTRDRMMKEYDRLYPAYDFASNKGYGTKKHIEALKEF 203

Query: 192 GPSCIHRLTF 201
           GP  IHR TF
Sbjct: 204 GPCPIHRRTF 213


>gi|300902002|ref|ZP_07120029.1| ribonuclease HII [Escherichia coli MS 84-1]
 gi|301305319|ref|ZP_07211415.1| ribonuclease HII [Escherichia coli MS 124-1]
 gi|300405888|gb|EFJ89426.1| ribonuclease HII [Escherichia coli MS 84-1]
 gi|300839424|gb|EFK67184.1| ribonuclease HII [Escherichia coli MS 124-1]
 gi|315254985|gb|EFU34953.1| ribonuclease HII [Escherichia coli MS 85-1]
          Length = 198

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 88/183 (48%), Positives = 111/183 (60%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L E+I   A+  S+
Sbjct: 11  LVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSL 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  A AV+KGDS  
Sbjct: 71  GRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMAVVKGDSRV 129

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F P
Sbjct: 130 PEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGP 189

Query: 204 LRN 206
           ++ 
Sbjct: 190 VKR 192


>gi|225389108|ref|ZP_03758832.1| hypothetical protein CLOSTASPAR_02854 [Clostridium asparagiforme
           DSM 15981]
 gi|225044826|gb|EEG55072.1| hypothetical protein CLOSTASPAR_02854 [Clostridium asparagiforme
           DSM 15981]
          Length = 217

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 89/205 (43%), Positives = 119/205 (58%), Gaps = 8/205 (3%)

Query: 8   ERPHFELEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           E+    LE M   +N +     + GIDE GRG LAGPV   A+IL  +     +NDSKK+
Sbjct: 11  EKELARLEQMREYENTYAACAMICGIDEAGRGPLAGPVAAGAVILPKDCTLLHLNDSKKL 70

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           S K+REEL+ +I   A+   +     + ID+ NI +AT +A+  A+  L V P   L D 
Sbjct: 71  SEKRREELFVQIKEQAVAWCVGIVGPERIDEINILQATYEAMRQAIAGLGVKPDILLNDA 130

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
             IP  +      +IKGD+ S+SIAAASI+AKVTRD +M    + +PDY F  H GY TA
Sbjct: 131 VEIP-GVDIMQVPIIKGDAKSVSIAAASILAKVTRDHMMAEYDQLFPDYSFAKHKGYGTA 189

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207
            H Q IKE GP  IHR +F  +RN+
Sbjct: 190 AHIQAIKELGPCPIHRRSF--IRNI 212


>gi|90407916|ref|ZP_01216091.1| ribonuclease HII [Psychromonas sp. CNPT3]
 gi|90311007|gb|EAS39117.1| ribonuclease HII [Psychromonas sp. CNPT3]
          Length = 204

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 85/184 (46%), Positives = 113/184 (61%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILD NN   G+ DSKK+S KK   L+ +I   A+ ISI
Sbjct: 18  YIAGVDEVGRGPLVGDVVTAAVILDANNPIEGLADSKKLSEKKLALLFTEIQEKALCISI 77

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             AS   ID  NI +AT+ A+  AV+ L + P    IDG   P  L     A++KGD+  
Sbjct: 78  GRASPTEIDDINILQATMLAMQRAVQGLSLQPNFVFIDGNRCPT-LNMACEAIVKGDARV 136

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASIIAKVTRD  MR    +YP YGF  H GYPT  H + +++ GP   +R +F+P
Sbjct: 137 AEISAASIIAKVTRDGEMRELDARYPQYGFAKHKGYPTKAHFEALEKYGPIDEYRKSFKP 196

Query: 204 LRNL 207
           ++ +
Sbjct: 197 VKKV 200


>gi|325696515|gb|EGD38405.1| ribonuclease HII [Streptococcus sanguinis SK160]
          Length = 254

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 85/197 (43%), Positives = 124/197 (62%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + + +   +AGIDEVGRG LAGPVV AA+IL P     G+NDSKKI  KK +++
Sbjct: 58  LRYEKELYKADYQAIAGIDEVGRGPLAGPVVAAAVILPPECKIKGLNDSKKIPKKKHQDI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ +   A+ + +   +++ ID+ NI++AT  A+  A+  L + P   LID   +  D+P
Sbjct: 118 YQAVLDKALAVGVGLMNNEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKLDVDIP 177

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD+LM    KK+P Y F  + GY T  H Q ++ 
Sbjct: 178 --QESIIKGDANSLSIAAASIVAKVTRDKLMADYDKKFPGYDFAKNAGYGTRSHLQGLER 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR TF P++++
Sbjct: 236 SGVTPIHRKTFEPIKSM 252


>gi|237729489|ref|ZP_04559970.1| ribonuclease HII [Citrobacter sp. 30_2]
 gi|226909218|gb|EEH95136.1| ribonuclease HII [Citrobacter sp. 30_2]
          Length = 198

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 85/183 (46%), Positives = 111/183 (60%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L+++I   A+  S+
Sbjct: 11  LVAGVDEVGRGPLVGAVVTAAVILDPARPIIGLNDSKKLSEKRRLALFDEIKEKALSWSL 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID+ NI +AT+ A+  AV  L + P   LIDG   P  LP  + AV+KGDS  
Sbjct: 71  GRAEPHEIDELNILQATMLAMQRAVAGLHIAPEYVLIDGNRCPA-LPVPSMAVVKGDSRV 129

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRD  M      +P YGF  H GYPTA H + +   G +  HR +F P
Sbjct: 130 AEISAASILAKVTRDAEMAALDTVFPQYGFAQHKGYPTAFHLEKLALHGATEHHRRSFGP 189

Query: 204 LRN 206
           ++ 
Sbjct: 190 VKR 192


>gi|319941636|ref|ZP_08015960.1| ribonuclease HII [Sutterella wadsworthensis 3_1_45B]
 gi|319804866|gb|EFW01720.1| ribonuclease HII [Sutterella wadsworthensis 3_1_45B]
          Length = 245

 Score =  255 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/187 (45%), Positives = 110/187 (58%), Gaps = 6/187 (3%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG LAGPV  AA+ILDP N   G+ DSKK+S KKRE L   I   A+   I  
Sbjct: 37  AGVDEAGRGPLAGPVCAAAVILDPENPIEGLADSKKLSAKKREALAPIIRERALAWGIGW 96

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQ-----VIPRSALIDGRSIPEDLPCQAFAVIKGD 140
           A+ + ID+ NI  AT  A+  AV  L+     V P   LIDG   P  LPC +  ++KGD
Sbjct: 97  ATVEEIDRVNILNATYLAMERAVATLKSRSGSVTPEYILIDGNRRPPHLPCMSDTIVKGD 156

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
               +I+AASI+AK  RD  M    +K+P YGF  H GY TA+H   +K  GP   HR T
Sbjct: 157 DKVPAISAASILAKTARDHRMAELDQKWPAYGFAKHAGYGTAQHLDALKRLGPCPEHRTT 216

Query: 201 FRPLRNL 207
           F P++++
Sbjct: 217 FEPIKSM 223


>gi|209518722|ref|ZP_03267538.1| Ribonuclease H [Burkholderia sp. H160]
 gi|209500836|gb|EEA00876.1| Ribonuclease H [Burkholderia sp. H160]
          Length = 249

 Score =  255 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 91/189 (48%), Positives = 119/189 (62%), Gaps = 3/189 (1%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSS 78
           E     V G+DE GRG LAGPVV AA+I DP      G++DSK +S  KRE LY+KI   
Sbjct: 26  ESAEDIVCGVDEAGRGPLAGPVVAAAVIFDPAKPMIRGLDDSKALSANKREALYDKIVER 85

Query: 79  AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137
           A+   I+SAS + ID  NI  AT+ A+  AVE L V+P    +DG   P  L  ++ AVI
Sbjct: 86  ALAYCIASASVEEIDSLNILHATMLAMKRAVEGLSVVPTLVKVDGNRCPT-LSIRSEAVI 144

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
            GD++  SI+AASI+AKVTRDR++   H+ YP YGFD+H GY T +H   ++E GP   H
Sbjct: 145 GGDALVKSISAASILAKVTRDRMLVELHQAYPMYGFDAHAGYGTPQHLAALREHGPCEHH 204

Query: 198 RLTFRPLRN 206
           R +F P+R 
Sbjct: 205 RRSFAPVRE 213


>gi|170021464|ref|YP_001726418.1| ribonuclease HII [Escherichia coli ATCC 8739]
 gi|194439910|ref|ZP_03071972.1| ribonuclease HII [Escherichia coli 101-1]
 gi|253774790|ref|YP_003037621.1| ribonuclease HII [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254160302|ref|YP_003043410.1| ribonuclease HII [Escherichia coli B str. REL606]
 gi|300932137|ref|ZP_07147422.1| ribonuclease HII [Escherichia coli MS 187-1]
 gi|312970284|ref|ZP_07784466.1| ribonuclease HII family protein [Escherichia coli 1827-70]
 gi|189043595|sp|B1IQF8|RNH2_ECOLC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|169756392|gb|ACA79091.1| Ribonuclease H [Escherichia coli ATCC 8739]
 gi|194421156|gb|EDX37181.1| ribonuclease HII [Escherichia coli 101-1]
 gi|242376014|emb|CAQ30697.1| RNAse HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
           BL21(DE3)]
 gi|253325834|gb|ACT30436.1| Ribonuclease H [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972203|gb|ACT37874.1| ribonuclease HII [Escherichia coli B str. REL606]
 gi|253976412|gb|ACT42082.1| ribonuclease HII [Escherichia coli BL21(DE3)]
 gi|300460113|gb|EFK23606.1| ribonuclease HII [Escherichia coli MS 187-1]
 gi|310337782|gb|EFQ02893.1| ribonuclease HII family protein [Escherichia coli 1827-70]
 gi|323959944|gb|EGB55591.1| ribonuclease HII [Escherichia coli H489]
          Length = 198

 Score =  255 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/183 (47%), Positives = 111/183 (60%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L E+I   A+  S+
Sbjct: 11  LVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSL 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  + AV+KGDS  
Sbjct: 71  GRAEPYEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSRV 129

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F P
Sbjct: 130 PEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGP 189

Query: 204 LRN 206
           ++ 
Sbjct: 190 VKR 192


>gi|239623747|ref|ZP_04666778.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521778|gb|EEQ61644.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 219

 Score =  255 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 97/205 (47%), Positives = 122/205 (59%), Gaps = 8/205 (3%)

Query: 8   ERPHFELEAMV-REKNMW---PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           E+    LEAM   EK       + GIDE GRG LAGPV   A+IL  +     +NDSKK+
Sbjct: 12  EKELARLEAMTEYEKEYGSSAFICGIDEAGRGPLAGPVAAGAVILPKDCRILYLNDSKKL 71

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           S K+REEL+E+I   A+  S+  A+   ID+ NI +AT +A+  AV  L V P   L D 
Sbjct: 72  SEKRREELFEEIKEKAVAWSVGIATPARIDEINILQATYEAMREAVGQLTVKPDVLLNDA 131

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
            +IP DL      +IKGD+ SLSIAAASI+AKVTRD +M    + +P YGF  H GY TA
Sbjct: 132 VTIP-DLDILQVPIIKGDAKSLSIAAASILAKVTRDHMMAGYEEMFPGYGFAKHKGYGTA 190

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207
            H   I+E GP  IHR TF  +RN 
Sbjct: 191 AHIAAIRELGPCPIHRRTF--IRNF 213


>gi|110677703|ref|YP_680710.1| ribonuclease HII [Roseobacter denitrificans OCh 114]
 gi|122973124|sp|Q16DB9|RNH2_ROSDO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|109453819|gb|ABG30024.1| ribonuclease HII [Roseobacter denitrificans OCh 114]
          Length = 198

 Score =  255 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 83/186 (44%), Positives = 127/186 (68%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81
               VAG+DEVGRG LAGPV  AA++LDP NIP G+NDSK++S K+R  L + + SSA I
Sbjct: 4   GARRVAGVDEVGRGPLAGPVTAAAVVLDPANIPEGLNDSKQLSVKRRNLLGDALASSADI 63

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           S+  AS + I++HNI +A+  A+  A+  L++ P   LIDG  +P+ L  +A  V+KGD+
Sbjct: 64  SVGHASVEEIEQHNILRASHMAMLRALAGLRLRPDFVLIDGAMVPQGLNLRAQPVVKGDT 123

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             LSI+AASIIAK+ RD++M    +++P YG+++++GY +  H   ++  G +  HR TF
Sbjct: 124 RCLSISAASIIAKIARDKIMVDLAQQHPGYGWETNMGYGSKSHISALRNLGVTPHHRRTF 183

Query: 202 RPLRNL 207
           +P+ ++
Sbjct: 184 KPVHHM 189


>gi|91792925|ref|YP_562576.1| ribonuclease H [Shewanella denitrificans OS217]
 gi|123356872|sp|Q12NX3|RNH2_SHEDO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|91714927|gb|ABE54853.1| Ribonuclease H [Shewanella denitrificans OS217]
          Length = 214

 Score =  255 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 83/185 (44%), Positives = 114/185 (61%), Gaps = 4/185 (2%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG L G VV AA+ILDPN    G+ DSKK+S K+ + LY +I   A+ +S
Sbjct: 24  GLVAGVDEVGRGPLIGDVVTAAVILDPNRPIAGLMDSKKLSEKRLQALYLEIMDKALAVS 83

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE---DLPCQAFAVIKG 139
           +  A+   ID+ NI  AT+ A+  AV  L + P   L+DG  +PE   +   +  A+IKG
Sbjct: 84  VGRANPSEIDELNILHATMLAMSRAVAGLNIKPERVLVDGNRLPEFALNAEVERHAIIKG 143

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D +  +I+AASIIAKVTRD  M     +YP+YGF  H GYPT  H + + + G    HR 
Sbjct: 144 DGLVPAISAASIIAKVTRDEEMLQLDARYPEYGFAKHKGYPTKTHFEALAQFGVLPEHRK 203

Query: 200 TFRPL 204
           +F+P+
Sbjct: 204 SFKPV 208


>gi|317131439|ref|YP_004090753.1| Ribonuclease H [Ethanoligenens harbinense YUAN-3]
 gi|315469418|gb|ADU26022.1| Ribonuclease H [Ethanoligenens harbinense YUAN-3]
          Length = 207

 Score =  255 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/199 (43%), Positives = 119/199 (59%), Gaps = 4/199 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
               E  +  +    V G+DE GRG LAGPV  AA+IL    +  G+NDSKK+S K+RE 
Sbjct: 3   WLTYEHALYAQGFGTVCGVDEAGRGPLAGPVFAAAVILPRGVMIEGVNDSKKLSEKRREI 62

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L+++I   A+  +++SA  + I ++NI  A+L A+  AV +LQ+  ++AL+DG   P  L
Sbjct: 63  LFDRIRDQALACAVASADEREIAEYNILGASLLAMRRAVSSLQIPAQAALVDGNRDPL-L 121

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              +  V++GD+    IAAASI+AKV+RDR M     KYP YGF  H GYPT  H + I 
Sbjct: 122 TIPSTCVVRGDARCACIAAASILAKVSRDRYMLELDAKYPQYGFAKHKGYPTRAHYEAIL 181

Query: 190 EKGPSCIHRLTFRPLRNLS 208
             GP   HRL F  LRNL 
Sbjct: 182 RYGPCPAHRLYF--LRNLE 198


>gi|153854846|ref|ZP_01996069.1| hypothetical protein DORLON_02074 [Dorea longicatena DSM 13814]
 gi|149752548|gb|EDM62479.1| hypothetical protein DORLON_02074 [Dorea longicatena DSM 13814]
          Length = 194

 Score =  255 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 91/180 (50%), Positives = 114/180 (63%), Gaps = 2/180 (1%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII- 81
              + GIDEVGRG  AGPVV  A+IL  ++    +NDSKK+S KKRE LY++I   A+  
Sbjct: 11  CQYICGIDEVGRGPFAGPVVAGAVILPKDDPILYLNDSKKLSEKKREALYDEIMERAVAT 70

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
            I   S   ID+ NI +AT +A+  A+ NL+V P   L D  +IPE +      +IKGD+
Sbjct: 71  GIGVVSPARIDEINILQATYEAMRMAIGNLKVQPDLLLNDAVTIPE-VEIPQVPIIKGDA 129

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            S+SIAAASIIAKVTRDRLM    K  P Y F S+ GY T KH + +KE GPS IHR TF
Sbjct: 130 KSVSIAAASIIAKVTRDRLMVEYDKVLPGYDFASNKGYGTKKHIEGLKELGPSPIHRRTF 189


>gi|82542782|ref|YP_406729.1| ribonuclease HII [Shigella boydii Sb227]
 gi|97189266|sp|Q325V7|RNH2_SHIBS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|81244193|gb|ABB64901.1| RNAse HII [Shigella boydii Sb227]
 gi|332098751|gb|EGJ03711.1| ribonuclease HII family protein [Shigella boydii 3594-74]
          Length = 198

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 87/184 (47%), Positives = 110/184 (59%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L E+I   A+  S
Sbjct: 10  QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  A  V+KGDS 
Sbjct: 70  LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMVVVKGDSR 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F 
Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFG 188

Query: 203 PLRN 206
           P++ 
Sbjct: 189 PVKR 192


>gi|55820934|ref|YP_139376.1| ribonuclease HII [Streptococcus thermophilus LMG 18311]
 gi|55822856|ref|YP_141297.1| ribonuclease HII [Streptococcus thermophilus CNRZ1066]
 gi|81559468|sp|Q5M021|RNH2_STRT1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|81560665|sp|Q5M4N6|RNH2_STRT2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|55736919|gb|AAV60561.1| ribonuclease HII [Streptococcus thermophilus LMG 18311]
 gi|55738841|gb|AAV62482.1| ribonuclease HII [Streptococcus thermophilus CNRZ1066]
          Length = 260

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 82/195 (42%), Positives = 120/195 (61%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +  + +  +AG+DEVGRG LAGPVV AA+IL       G+NDSKKI   K E +Y 
Sbjct: 65  YEKSLYARGIELIAGVDEVGRGPLAGPVVAAAVILPKLCKIKGLNDSKKIPKSKHEAIYN 124

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           ++   A+ + I    +  ID  NI++AT  A+  A+E L   P   LID  ++  DLP +
Sbjct: 125 QVMKEAVAVGIGIKDNYVIDDVNIYEATKLAMIEAIEKLNPQPEHLLIDAMNL--DLPIE 182

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ SLSIAAASI+AKVTRD++M    +++P Y F  + GY T +H   I + G
Sbjct: 183 QTSIIKGDANSLSIAAASIVAKVTRDKMMADYEQEFPGYAFAKNAGYGTKEHLSGIDKFG 242

Query: 193 PSCIHRLTFRPLRNL 207
            + IHR +F P++++
Sbjct: 243 VTPIHRRSFEPIKSI 257


>gi|184155373|ref|YP_001843713.1| ribonuclease HII [Lactobacillus fermentum IFO 3956]
 gi|238692975|sp|B2GC51|RNH2_LACF3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|183226717|dbj|BAG27233.1| ribonuclease HII [Lactobacillus fermentum IFO 3956]
 gi|299783202|gb|ADJ41200.1| Ribonuclease HII (RNase HII) [Lactobacillus fermentum CECT 5716]
          Length = 256

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 84/195 (43%), Positives = 119/195 (61%), Gaps = 3/195 (1%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E  + +     VAGIDEVGRG LAGPVV  A++LD      G+ DSK++S  +RE+
Sbjct: 59  RFRYENQLWQAGHQYVAGIDEVGRGPLAGPVVTCAVVLDSQFDLVGVTDSKQLSRHEREQ 118

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY +I   A+ +S++ +  Q ID+ NI+ AT  A+  +V+ L   P   ++D   +P D+
Sbjct: 119 LYLRILDEAVEVSLAVSPAQEIDRLNIYAATQTAMIRSVKALHHQPSHLIVDA--VPLDI 176

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +IKGD  S+S+AAASI+AK  RD LM I  + YP YGF  ++GY TA H   ++
Sbjct: 177 PVPQTTLIKGDQKSISVAAASIVAKEYRDHLMAIYDRLYPGYGFKDNMGYGTAAHLAGLE 236

Query: 190 EKGPSCIHRLTFRPL 204
           + G   IHR TFRP+
Sbjct: 237 QLGACPIHRRTFRPV 251


>gi|90022228|ref|YP_528055.1| ribonuclease HII [Saccharophagus degradans 2-40]
 gi|123090288|sp|Q21HI6|RNH2_SACD2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|89951828|gb|ABD81843.1| Ribonuclease H [Saccharophagus degradans 2-40]
          Length = 199

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 88/183 (48%), Positives = 117/183 (63%), Gaps = 2/183 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG LAG VV AA+IL  ++   G+ DSKKI+ KKR+ L++ I   A+   
Sbjct: 9   QFVAGVDEVGRGPLAGDVVAAAVILGEDHGIEGLADSKKITEKKRDALFDVIQERAVSFC 68

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+ AS + ID+ NI  A+L A+  AVE L + P+   +DG  +P+     A AV+KGDS+
Sbjct: 69  IARASVEEIDELNILHASLLAMKRAVEGLNIQPQYIYVDGNKLPK-WTYSAEAVVKGDSL 127

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRDR M    +KYP YG   H GYPT  H   +K  GP+ IHR +F 
Sbjct: 128 VEEISAASILAKVTRDREMVALDEKYPGYGLAGHKGYPTKVHMDALKRLGPTIIHRKSFA 187

Query: 203 PLR 205
           P+R
Sbjct: 188 PVR 190


>gi|170699887|ref|ZP_02890917.1| Ribonuclease H [Burkholderia ambifaria IOP40-10]
 gi|170135209|gb|EDT03507.1| Ribonuclease H [Burkholderia ambifaria IOP40-10]
          Length = 217

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 90/183 (49%), Positives = 121/183 (66%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83
            V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKR+ LY+ I + A    +
Sbjct: 27  IVCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKALSAKKRDALYDLIVARASAYCV 86

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS   ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  +A A++ GD++ 
Sbjct: 87  ASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LTVRAEAIVSGDALV 145

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+++P YGF+ HVGY T KH   ++E GP  +HR +F P
Sbjct: 146 PSISAASILAKVTRDRMLVDLHERFPVYGFNVHVGYSTPKHLAALREHGPCEVHRRSFAP 205

Query: 204 LRN 206
           +R 
Sbjct: 206 VRE 208


>gi|304312462|ref|YP_003812060.1| Ribonuclease HII [gamma proteobacterium HdN1]
 gi|301798195|emb|CBL46417.1| Ribonuclease HII [gamma proteobacterium HdN1]
          Length = 201

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 82/188 (43%), Positives = 115/188 (61%), Gaps = 2/188 (1%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
            +++  +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S KKRE+L E+I + A
Sbjct: 10  NRDVGLIAGVDEVGRGPLIGAVVAAAVILDPAKPIEGLTDSKKLSEKKREQLAEQIRAQA 69

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           +  +I  A  + ID+ NI +A+L A+  AV  L + P   L+DG   P  L     A++K
Sbjct: 70  LAWAIGRAEAEEIDRINILQASLLAMQRAVLQLAIQPDLVLVDGNRCPR-LSLPCRAIVK 128

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD +   I+AASI+AKV RD+ M    ++YP YG   H GYPTA H   I+  G +  HR
Sbjct: 129 GDLLVPCISAASILAKVARDQEMLEMDRRYPHYGLAQHKGYPTAAHLAAIEIHGIAPEHR 188

Query: 199 LTFRPLRN 206
            +F P++ 
Sbjct: 189 RSFGPIKK 196


>gi|289423531|ref|ZP_06425332.1| ribonuclease HII [Peptostreptococcus anaerobius 653-L]
 gi|289156033|gb|EFD04697.1| ribonuclease HII [Peptostreptococcus anaerobius 653-L]
          Length = 266

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 94/196 (47%), Positives = 114/196 (58%), Gaps = 4/196 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E          VAGIDEVGRG LAGPVV A +IL       GINDSKKI  KKREELY
Sbjct: 70  QYENDAYLAGYQLVAGIDEVGRGPLAGPVVAAVVILKKGTKIRGINDSKKIPEKKREELY 129

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           + I   A+   I  AS   ID+HNI  AT  A+  A++ L+  P   L D   IP  +  
Sbjct: 130 DLILDQALDYGIGMASPSEIDEHNILNATYIAMRRAIDKLKYRPDCLLNDAVRIP-GVDI 188

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +IKGDS S+SI AASI+AKVTRDR+M    K+YP Y F S+ GY T +H   I+ K
Sbjct: 189 HQVPIIKGDSKSISIGAASIVAKVTRDRMMYDYDKEYPGYNFSSNKGYGTNEHYDGIRAK 248

Query: 192 GPSCIHRLTFRPLRNL 207
           G   IHR +F  L+N 
Sbjct: 249 GKCPIHRESF--LKNF 262


>gi|269138107|ref|YP_003294807.1| ribonuclease HII [Edwardsiella tarda EIB202]
 gi|267983767|gb|ACY83596.1| ribonuclease HII [Edwardsiella tarda EIB202]
 gi|304558151|gb|ADM40815.1| Ribonuclease HII [Edwardsiella tarda FL6-60]
          Length = 197

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 87/184 (47%), Positives = 116/184 (63%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++I   A+  S+
Sbjct: 12  RIAGVDEVGRGPLVGAVVTAAVILDPARPIAGLADSKKLSEKRRCALYDEIVEKALCWSL 71

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID+ NI +AT+ A+  AV  L + P   LIDG   P  LP  A AV+KGDS  
Sbjct: 72  GRAEAEEIDRLNILQATMVAMQRAVAGLALPPDFVLIDGNRCPA-LPMAAQAVVKGDSRV 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M    ++YP+YGF  H GYPTA H + +   G +  HR +F P
Sbjct: 131 AEISAASILAKVTRDREMAELDRQYPEYGFAQHKGYPTALHLERLAALGATEHHRRSFGP 190

Query: 204 LRNL 207
           ++ +
Sbjct: 191 VKRV 194


>gi|84515024|ref|ZP_01002387.1| ribonuclease HII [Loktanella vestfoldensis SKA53]
 gi|84511183|gb|EAQ07637.1| ribonuclease HII [Loktanella vestfoldensis SKA53]
          Length = 210

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 88/198 (44%), Positives = 126/198 (63%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E     +    +AG+DEVGRG LAGPVV AA++LDP  +P G+NDSKK++  +RE
Sbjct: 4   PDFSFEDTAHGRGHLRIAGVDEVGRGPLAGPVVAAAVVLDPARLPAGLNDSKKLTLDRRE 63

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L+ +I  SA +SI+ AS   ID HNI +A+  A+  A+  L   P   LIDG  +P  L
Sbjct: 64  ALFSQIMDSADVSIAQASVAEIDSHNILRASHLAMLRAIAGLATPPDHVLIDGNMVPRGL 123

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              +  ++KGD+ SLSIAAASI+AKV RDR M    +++P YG++++ GYPT  H+  + 
Sbjct: 124 TLSSETIVKGDARSLSIAAASIVAKVWRDRHMVDLAQQFPGYGWEANAGYPTPAHKLALV 183

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G +  HR +F+P+ N+
Sbjct: 184 TLGVTPHHRRSFKPVHNI 201


>gi|330959212|gb|EGH59472.1| ribonuclease HII [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 217

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 86/182 (47%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  KRE+L+ +I   A+   I
Sbjct: 13  LVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEAKREKLFVEIQEKALCWFI 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI  AT+ A+  AVE L + P+ ALIDG   P+ L   +  V++GD+  
Sbjct: 73  ARAEVEEIDQLNILHATMLAMKRAVEGLVITPKLALIDGNRCPQ-LSVPSAPVVQGDAKV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P
Sbjct: 132 PAIAAASILAKVSRDREMAALELVYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 191

Query: 204 LR 205
           +R
Sbjct: 192 VR 193


>gi|300920135|ref|ZP_07136586.1| ribonuclease HII [Escherichia coli MS 115-1]
 gi|300412832|gb|EFJ96142.1| ribonuclease HII [Escherichia coli MS 115-1]
          Length = 198

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 87/184 (47%), Positives = 111/184 (60%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L E+I   A+  S
Sbjct: 10  QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  + AV+KGDS 
Sbjct: 70  LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSR 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F 
Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFVQHKGYPTAFHLEKLAEHGATEHHRRSFG 188

Query: 203 PLRN 206
           P++ 
Sbjct: 189 PVKR 192


>gi|322418210|ref|YP_004197433.1| Ribonuclease H [Geobacter sp. M18]
 gi|320124597|gb|ADW12157.1| Ribonuclease H [Geobacter sp. M18]
          Length = 228

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 93/208 (44%), Positives = 125/208 (60%), Gaps = 5/208 (2%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           +F ++ P      LE     +    +AG+DE GRG LAGPVV AA+I+    +  G+NDS
Sbjct: 4   LFPDN-PPLDMLALEGQALRRGYCRIAGVDEAGRGPLAGPVVAAAVIIPTGVLLPGVNDS 62

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           K+++ +KREEL++ I   A+ + +    H  +D  NI +ATL A+  AV  L V P   L
Sbjct: 63  KQLTEEKREELFDLIYREAVAVGVGIGDHALVDSINILQATLRAMSDAVRALSVAPDFIL 122

Query: 120 IDGRS-IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
           IDG S IP ++P     V KGDS+SLSIAAASIIAKVTRDR+M +   ++  YGF SH G
Sbjct: 123 IDGISSIPMNIP--QRTVKKGDSLSLSIAAASIIAKVTRDRMMVVYDTQFSGYGFASHKG 180

Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           Y  A H   I E GP  IHR +F  ++ 
Sbjct: 181 YGAASHLAAIAELGPCPIHRKSFSGVKE 208


>gi|260437013|ref|ZP_05790829.1| ribonuclease HII [Butyrivibrio crossotus DSM 2876]
 gi|292810322|gb|EFF69527.1| ribonuclease HII [Butyrivibrio crossotus DSM 2876]
          Length = 210

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 89/186 (47%), Positives = 113/186 (60%), Gaps = 4/186 (2%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81
              + GIDE GRG L GPVV AA+IL        INDSKK+S  KREE+Y++I   A+  
Sbjct: 27  YGTICGIDEAGRGPLCGPVVAAAVILPDEYNILYINDSKKLSETKREEVYKEIDKYAVAY 86

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
            +   S + ID+ NI +AT +A+  A+  L V P   L D  +IP  +  +   +IKGD+
Sbjct: 87  GVGIVSPERIDEINILQATYEAMRTAIHKLSVTPDILLNDAVTIPM-VDIKQVPIIKGDA 145

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            S SIAAASI+AKVTRD LM    K YP+YGF  H GY TA H + IKE GP  IHR TF
Sbjct: 146 KSQSIAAASIVAKVTRDHLMEEYDKLYPEYGFAKHKGYGTAAHIKAIKEYGPCPIHRRTF 205

Query: 202 RPLRNL 207
             ++N 
Sbjct: 206 --IKNF 209


>gi|161504651|ref|YP_001571763.1| ribonuclease HII [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|189043654|sp|A9MPH8|RNH2_SALAR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|160865998|gb|ABX22621.1| hypothetical protein SARI_02772 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 198

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 86/183 (46%), Positives = 111/183 (60%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  LY++I   A+  S+
Sbjct: 11  LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALYDEIKEKALSWSL 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID+ NI  AT+ A+  AV  L + P   LIDG   P  LP  + AV+KGDS  
Sbjct: 71  GRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPA-LPVPSMAVVKGDSRV 129

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + + G +  HR +F P
Sbjct: 130 AEISAASILAKVTRDAEMAALDIIFPQYGFAQHKGYPTAFHLEKLAQYGATAHHRRSFAP 189

Query: 204 LRN 206
           ++ 
Sbjct: 190 VKR 192


>gi|148544008|ref|YP_001271378.1| ribonuclease HII [Lactobacillus reuteri DSM 20016]
 gi|184153402|ref|YP_001841743.1| ribonuclease HII [Lactobacillus reuteri JCM 1112]
 gi|227364921|ref|ZP_03848966.1| ribonuclease H [Lactobacillus reuteri MM2-3]
 gi|325682454|ref|ZP_08161971.1| ribonuclease HII [Lactobacillus reuteri MM4-1A]
 gi|166991068|sp|A5VJL7|RNH2_LACRD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|229564285|sp|B2G731|RNH2_LACRJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|148531042|gb|ABQ83041.1| RNase HII [Lactobacillus reuteri DSM 20016]
 gi|183224746|dbj|BAG25263.1| ribonuclease HII [Lactobacillus reuteri JCM 1112]
 gi|227070068|gb|EEI08446.1| ribonuclease H [Lactobacillus reuteri MM2-3]
 gi|324978293|gb|EGC15243.1| ribonuclease HII [Lactobacillus reuteri MM4-1A]
          Length = 256

 Score =  254 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 79/195 (40%), Positives = 115/195 (58%), Gaps = 3/195 (1%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F+ E    E     +AG+DEVGRG LAGPVV  A+IL+ +    G+ DSK+++  +RE 
Sbjct: 59  RFKYEKYYWENGCQYIAGMDEVGRGPLAGPVVTCAVILNADFDLIGVTDSKQLTRHEREN 118

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY +I   A+ +SI+      ID+ NI+ AT DA+  AV +L   P   ++D   +P  +
Sbjct: 119 LYLRIVDEAVEVSIAVNDAPVIDQMNIYAATQDAMIRAVNHLHHRPDHLIVDA--VPLAI 176

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                 +IKGD  S+S+AAASI+AK  RD LMR     YP YGF  ++GY T +H   ++
Sbjct: 177 DIPQTTLIKGDQKSISVAAASIVAKEYRDHLMRDYDYVYPGYGFAQNMGYGTKEHLAGLE 236

Query: 190 EKGPSCIHRLTFRPL 204
           + G + IHR +F P+
Sbjct: 237 KMGATPIHRRSFNPV 251


>gi|121594909|ref|YP_986805.1| ribonuclease HII [Acidovorax sp. JS42]
 gi|222110440|ref|YP_002552704.1| ribonuclease hii [Acidovorax ebreus TPSY]
 gi|189043530|sp|A1W904|RNH2_ACISJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807973|sp|B9MGN1|RNH2_DIAST RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|120606989|gb|ABM42729.1| RNase HII [Acidovorax sp. JS42]
 gi|221729884|gb|ACM32704.1| Ribonuclease H [Acidovorax ebreus TPSY]
          Length = 209

 Score =  254 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 85/182 (46%), Positives = 119/182 (65%), Gaps = 2/182 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82
             VAG+DE GRG LAGPVV AA+ILD      G+ DSK ++  +RE+LY++I + A+  S
Sbjct: 19  GLVAGVDEAGRGPLAGPVVAAAVILDDLQPIAGLADSKVLTAARREKLYDEIRAKALCCS 78

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+ AS + ID+HNI +AT+ A+  AV  L++ P   L+DG  +P  L   A A++KGD++
Sbjct: 79  IAEASVEEIDQHNILQATMLAMRRAVLGLRLKPVRVLVDGNRLPP-LDVPAEAIVKGDAL 137

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             SI+AASI+AKVTRDR     H++YP YGF  H GY TA+H   ++  G    HR +F 
Sbjct: 138 VASISAASILAKVTRDRWCAQLHQQYPVYGFAGHKGYGTAEHLAALEVHGACPQHRRSFA 197

Query: 203 PL 204
           P+
Sbjct: 198 PV 199


>gi|81428604|ref|YP_395604.1| ribonuclease HII (RNase HII) [Lactobacillus sakei subsp. sakei 23K]
 gi|97182876|sp|Q38WY6|RNH2_LACSS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|78610246|emb|CAI55295.1| Ribonuclease HII (RNase HII) [Lactobacillus sakei subsp. sakei 23K]
          Length = 253

 Score =  254 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 91/197 (46%), Positives = 127/197 (64%), Gaps = 7/197 (3%)

Query: 15  EAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           E    EK +WP    VAGIDEVGRG LAGPVV AA+IL  +   + +NDSK++S K ++E
Sbjct: 57  ERRQTEKALWPDYPLVAGIDEVGRGPLAGPVVTAAVILPHDFDLWQVNDSKQLSFKLKQE 116

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY +I + A+ +SI  AS + ID  NI+ AT  A+  AV  L   P   L+D  ++P D+
Sbjct: 117 LYREIMAQAVSVSIGIASPERIDTENIYHATELAMGEAVAGLDKQPDYLLVDAMTVPTDI 176

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +IKGD+ S+SIA+ASI+AKV RD+LM    ++YP Y   +++GY TAKH   + 
Sbjct: 177 P--QEKLIKGDARSISIASASIVAKVIRDQLMINYDQQYPGYDLANNMGYGTAKHLAGLA 234

Query: 190 EKGPSCIHRLTFRPLRN 206
           E G + IHR +F P++N
Sbjct: 235 ELGVTPIHRRSFSPVQN 251


>gi|161524444|ref|YP_001579456.1| ribonuclease HII [Burkholderia multivorans ATCC 17616]
 gi|189350801|ref|YP_001946429.1| ribonuclease HII [Burkholderia multivorans ATCC 17616]
 gi|221198308|ref|ZP_03571354.1| ribonuclease HII [Burkholderia multivorans CGD2M]
 gi|221208247|ref|ZP_03581251.1| ribonuclease HII [Burkholderia multivorans CGD2]
 gi|221215471|ref|ZP_03588435.1| ribonuclease HII [Burkholderia multivorans CGD1]
 gi|160341873|gb|ABX14959.1| Ribonuclease H [Burkholderia multivorans ATCC 17616]
 gi|189334823|dbj|BAG43893.1| ribonuclease H [Burkholderia multivorans ATCC 17616]
 gi|221164655|gb|EED97137.1| ribonuclease HII [Burkholderia multivorans CGD1]
 gi|221171895|gb|EEE04338.1| ribonuclease HII [Burkholderia multivorans CGD2]
 gi|221182240|gb|EEE14641.1| ribonuclease HII [Burkholderia multivorans CGD2M]
          Length = 210

 Score =  254 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 90/183 (49%), Positives = 120/183 (65%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83
            V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKR+ LYE I S+A    +
Sbjct: 23  IVCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKVLSAKKRDALYELIVSNARAYCV 82

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS   ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  +A A++ GD++ 
Sbjct: 83  ASASVDEIDSLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LSVRAEAIVSGDALV 141

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+++P YGF+ H GY T +H   ++E GP   HR +F P
Sbjct: 142 PSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTPQHLAALREHGPCEAHRRSFAP 201

Query: 204 LRN 206
           +R 
Sbjct: 202 VRE 204


>gi|296158890|ref|ZP_06841718.1| Ribonuclease H [Burkholderia sp. Ch1-1]
 gi|295890765|gb|EFG70555.1| Ribonuclease H [Burkholderia sp. Ch1-1]
          Length = 247

 Score =  254 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 91/189 (48%), Positives = 122/189 (64%), Gaps = 3/189 (1%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSS 78
           E     V G+DE GRG LAGPVV AA+I DP+     G++DSK +S KKR+ELY+KI   
Sbjct: 25  ETPHDIVCGVDEAGRGPLAGPVVAAAVIFDPSKPMIRGLDDSKVLSAKKRDELYDKIVDR 84

Query: 79  AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137
           A+   I+SAS + ID  NI  AT+ A+  AVE L V+P    IDG   P  L  ++ AVI
Sbjct: 85  ALAYCIASASVEEIDSLNILHATMLAMKRAVEGLSVVPTLVKIDGNRCPT-LSVRSEAVI 143

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
            GD++  SI+AASI+AKVTRDR++   H+ +P YGF++H GY T +H   ++E GP   H
Sbjct: 144 GGDALVKSISAASILAKVTRDRMLLELHQTHPVYGFNAHAGYGTPQHLAALREHGPCEHH 203

Query: 198 RLTFRPLRN 206
           R +F P+R 
Sbjct: 204 RRSFAPVRE 212


>gi|116627722|ref|YP_820341.1| ribonuclease HII [Streptococcus thermophilus LMD-9]
 gi|122267681|sp|Q03KX7|RNH2_STRTD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|116100999|gb|ABJ66145.1| RNase HII [Streptococcus thermophilus LMD-9]
          Length = 255

 Score =  254 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 82/195 (42%), Positives = 120/195 (61%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +  + +  +AG+DEVGRG LAGPVV AA+IL       G+NDSKKI   K E +Y 
Sbjct: 60  YEKSLYARGIELIAGVDEVGRGPLAGPVVAAAVILPKLCKIKGLNDSKKIPKSKHEAIYN 119

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           ++   A+ + I    +  ID  NI++AT  A+  A+E L   P   LID  ++  DLP +
Sbjct: 120 QVMKEAVAVGIGIKDNYVIDDVNIYEATKLAMIEAIEKLNPQPEHLLIDAMNL--DLPIE 177

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ SLSIAAASI+AKVTRD++M    +++P Y F  + GY T +H   I + G
Sbjct: 178 QTSIIKGDANSLSIAAASIVAKVTRDKMMADYEQEFPGYAFAKNAGYGTKEHLSGIDKFG 237

Query: 193 PSCIHRLTFRPLRNL 207
            + IHR +F P++++
Sbjct: 238 VTPIHRRSFEPIKSI 252


>gi|326316587|ref|YP_004234259.1| ribonuclease H [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373423|gb|ADX45692.1| Ribonuclease H [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 240

 Score =  254 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 81/183 (44%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82
             VAG+DE GRG LAGPVV AA+ILD      G+ DSK ++  +RE L+++I + A+  S
Sbjct: 21  GLVAGVDEAGRGPLAGPVVAAAVILDELQPIDGLADSKTLTAARREALFDEIRAKALCCS 80

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           ++ A+ + ID  NI +AT+ A+  AV  L++ P   L+DG  +P  L   A A++KGD++
Sbjct: 81  VAEATVEEIDTLNILQATMLAMRRAVAGLRLKPVRVLVDGNRLPP-LDVPAEAIVKGDAL 139

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +I+AASI+AKVTRDR     H+ YP YGF SH GY TA+H   ++  G    HR +F 
Sbjct: 140 VQAISAASILAKVTRDRWCAQLHQAYPHYGFASHKGYGTAEHMAALQVHGACPEHRRSFA 199

Query: 203 PLR 205
           P+ 
Sbjct: 200 PVE 202


>gi|298370293|ref|ZP_06981609.1| ribonuclease HII [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281753|gb|EFI23242.1| ribonuclease HII [Neisseria sp. oral taxon 014 str. F0314]
          Length = 196

 Score =  254 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 83/184 (45%), Positives = 112/184 (60%), Gaps = 1/184 (0%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DE GRG L G V  AA+IL       G+ DSKK+S KKR+ L   I   A+  SI
Sbjct: 5   LLAGMDEAGRGPLVGSVFAAAVILPERYDLPGLTDSKKLSEKKRDTLAVSIKEQAVSWSI 64

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS + I + NI  AT+ A+  AV+ L V+P   LIDG  +P+DL   A AV+KGDS  
Sbjct: 65  ASASPEEIAELNILHATMLAMARAVQGLAVVPDKVLIDGNRVPKDLGVPAEAVVKGDSKI 124

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           + I+AAS++AK  RD  M    ++YP YGFD H GY TA+H   +++ G    HR  F P
Sbjct: 125 IEISAASVLAKTARDAEMYALAERYPQYGFDKHKGYGTAQHLAALQKYGVLPEHRRDFAP 184

Query: 204 LRNL 207
           ++ L
Sbjct: 185 VKAL 188


>gi|323526474|ref|YP_004228627.1| Ribonuclease H [Burkholderia sp. CCGE1001]
 gi|323383476|gb|ADX55567.1| Ribonuclease H [Burkholderia sp. CCGE1001]
          Length = 253

 Score =  254 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 89/184 (48%), Positives = 120/184 (65%), Gaps = 3/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-IS 82
            V G+DE GRG LAGPVV AA+I DP+     G++DSK ++ KKR+ELYEKI   A+   
Sbjct: 25  VVCGVDEAGRGPLAGPVVAAAVIFDPSKPMIRGLDDSKALTAKKRDELYEKIVDRALAYC 84

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+SA+ + ID  NI  AT+ A+  AVE L V P    +DG   P  L  ++ AVI GD++
Sbjct: 85  IASATVEEIDSLNILHATMLAMKRAVEGLAVTPTLVKVDGNRCPM-LSIRSEAVIGGDAL 143

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             SI+AASI+AKVTRDR++   H+ YP YGF++H GY T +H   ++E GP   HR +F 
Sbjct: 144 VKSISAASILAKVTRDRMLLELHQTYPMYGFNAHAGYGTPQHLAALREHGPCEHHRRSFA 203

Query: 203 PLRN 206
           P+R 
Sbjct: 204 PVRE 207


>gi|255655274|ref|ZP_05400683.1| ribonuclease HII [Clostridium difficile QCD-23m63]
 gi|296451258|ref|ZP_06892998.1| ribonuclease H [Clostridium difficile NAP08]
 gi|296880390|ref|ZP_06904353.1| ribonuclease H [Clostridium difficile NAP07]
 gi|296259864|gb|EFH06719.1| ribonuclease H [Clostridium difficile NAP08]
 gi|296428631|gb|EFH14515.1| ribonuclease H [Clostridium difficile NAP07]
          Length = 255

 Score =  254 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 82/195 (42%), Positives = 117/195 (60%), Gaps = 4/195 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E     K    + GIDE GRG LAGPVV + ++   +    G+NDSKK+S  KR+EL+E
Sbjct: 63  FENEGYNKGYLYIGGIDEAGRGPLAGPVVASVVVFKKDTKIEGVNDSKKLSEAKRDELFE 122

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   A+   I   +++ ID+ NI  AT  A+  A+  L+  P   L+D  +IP  +   
Sbjct: 123 VIKEEALDYGIGIVNNEEIDEFNILNATYMAMKKAINCLKKAPDYLLVDAATIP-GIDIA 181

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              ++KGDS S+SIAAASI+AKVTRD +M    + YP+YGF SH GY T +H + I++ G
Sbjct: 182 QNPIVKGDSKSISIAAASILAKVTRDSIMYQYDRVYPEYGFKSHKGYGTKEHYEAIEKYG 241

Query: 193 PSCIHRLTFRPLRNL 207
            + IHR +F  L+N+
Sbjct: 242 ITPIHRKSF--LKNI 254


>gi|126698859|ref|YP_001087756.1| ribonuclease HII [Clostridium difficile 630]
 gi|254974807|ref|ZP_05271279.1| ribonuclease HII [Clostridium difficile QCD-66c26]
 gi|255092195|ref|ZP_05321673.1| ribonuclease HII [Clostridium difficile CIP 107932]
 gi|255100280|ref|ZP_05329257.1| ribonuclease HII [Clostridium difficile QCD-63q42]
 gi|255306219|ref|ZP_05350391.1| ribonuclease HII [Clostridium difficile ATCC 43255]
 gi|255313934|ref|ZP_05355517.1| ribonuclease HII [Clostridium difficile QCD-76w55]
 gi|255516614|ref|ZP_05384290.1| ribonuclease HII [Clostridium difficile QCD-97b34]
 gi|255649714|ref|ZP_05396616.1| ribonuclease HII [Clostridium difficile QCD-37x79]
 gi|260682869|ref|YP_003214154.1| ribonuclease HII [Clostridium difficile CD196]
 gi|260686467|ref|YP_003217600.1| ribonuclease HII [Clostridium difficile R20291]
 gi|306519826|ref|ZP_07406173.1| ribonuclease HII [Clostridium difficile QCD-32g58]
 gi|123363581|sp|Q18BC9|RNH2_CLOD6 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|115250296|emb|CAJ68118.1| Ribonuclease HII (RNase HII) [Clostridium difficile]
 gi|260209032|emb|CBA62137.1| ribonuclease HII [Clostridium difficile CD196]
 gi|260212483|emb|CBE03398.1| ribonuclease HII [Clostridium difficile R20291]
          Length = 255

 Score =  254 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 82/195 (42%), Positives = 118/195 (60%), Gaps = 4/195 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E    +K    + GIDE GRG LAGPVV + ++   +    G+NDSKK+S  KR+EL+E
Sbjct: 63  FENEGYDKGYLYIGGIDEAGRGPLAGPVVASVVVFKKDTKIEGVNDSKKLSEAKRDELFE 122

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   A+   I   +++ ID+ NI  AT  A+  A+  L+  P   L+D  +IP  +   
Sbjct: 123 VIKEEALDYGIGIVNNEEIDEFNILNATYMAMKKAINCLKKAPDYLLVDAATIP-GIDIS 181

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              ++KGDS S+SIAAASI+AKVTRD +M    + YP+YGF SH GY T +H + I++ G
Sbjct: 182 QNPIVKGDSKSISIAAASILAKVTRDSIMYQYDRVYPEYGFKSHKGYGTKEHYEAIEKYG 241

Query: 193 PSCIHRLTFRPLRNL 207
            + IHR +F  L+N+
Sbjct: 242 ITPIHRKSF--LKNI 254


>gi|124262697|ref|YP_001023167.1| RNase HII [Methylibium petroleiphilum PM1]
 gi|189043523|sp|A2SMZ3|RNH21_METPP RecName: Full=Ribonuclease HII 1; Short=RNase HII 1
 gi|124261943|gb|ABM96932.1| RNase HII [Methylibium petroleiphilum PM1]
          Length = 198

 Score =  254 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 85/179 (47%), Positives = 114/179 (63%), Gaps = 2/179 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG LAGPVV AA+ILDP+    G+NDSK++S K+R+ L++ I   A    I+ 
Sbjct: 10  AGVDEAGRGPLAGPVVAAAVILDPSRPIDGLNDSKQLSAKRRDRLFDLIIERAAAYCIAE 69

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           AS + ID+ NI +AT+ A+  A+  L V P+  LIDG   P  LP ++ A++KGD+   S
Sbjct: 70  ASVEEIDRLNILQATMLAMQRAIAGLSVTPQLVLIDGNRSPL-LPMRSEAIVKGDARVTS 128

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           I AASI+AKV RDRL    H+ +P YGF  H GY TA H   + + G    HR TF P+
Sbjct: 129 IGAASILAKVHRDRLCAKLHETFPLYGFAVHKGYGTADHLAALVQHGACPEHRRTFSPV 187


>gi|157376279|ref|YP_001474879.1| ribonuclease H [Shewanella sediminis HAW-EB3]
 gi|189043661|sp|A8FY28|RNH2_SHESH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157318653|gb|ABV37751.1| Ribonuclease H [Shewanella sediminis HAW-EB3]
          Length = 213

 Score =  254 bits (650), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 87/191 (45%), Positives = 115/191 (60%), Gaps = 8/191 (4%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
              AG+DEVGRG L G VV AA+ILDP     G+NDSKK+S KKRE L+ +I   A+ IS
Sbjct: 18  GLYAGVDEVGRGPLVGNVVTAAVILDPTKPITGLNDSKKLSEKKREALFTEIHEKALAIS 77

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-------DLPCQAFA 135
           I  AS + ID+ NI  AT+ A+  AV  L + P S L+DG   P+       D   ++ A
Sbjct: 78  IGYASPEEIDELNILHATMLAMQRAVAGLDMAPTSVLVDGNRTPDFSHGEDTDRNIESHA 137

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           +IKGD +   I+AASI+AKV RDR M +   ++P YGF  H GYPT  H + +   G   
Sbjct: 138 IIKGDGLVAGISAASIVAKVIRDREMDLLDMEHPQYGFAKHKGYPTKAHFEALALHGVLP 197

Query: 196 IHRLTFRPLRN 206
            HR +FRP++ 
Sbjct: 198 EHRKSFRPVKE 208


>gi|315300687|gb|EFU59914.1| ribonuclease HII [Escherichia coli MS 16-3]
          Length = 198

 Score =  254 bits (650), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 86/184 (46%), Positives = 110/184 (59%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L E+I   A+  S
Sbjct: 10  QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  + AV+ GDS 
Sbjct: 70  LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVTGDSR 128

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F 
Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFG 188

Query: 203 PLRN 206
           P++ 
Sbjct: 189 PVKR 192


>gi|322516896|ref|ZP_08069794.1| ribonuclease HII [Streptococcus vestibularis ATCC 49124]
 gi|322124552|gb|EFX96031.1| ribonuclease HII [Streptococcus vestibularis ATCC 49124]
          Length = 256

 Score =  254 bits (650), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 80/197 (40%), Positives = 119/197 (60%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E ++  + +  +AG+DEVGRG LAGPVV AA+IL       G+NDSKKI   K E +
Sbjct: 58  LSYEKVLYAQGVELIAGVDEVGRGPLAGPVVAAAVILPKFCKIKGLNDSKKIPKSKHEAI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+++   A+ + +    +  ID  NI++AT  A+  A+E L   P   LID  ++  DLP
Sbjct: 118 YKQVMKEAVAVGVGIKDNHVIDDVNIYEATKLAMAEAIEKLSPKPEHLLIDAMTL--DLP 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRD++M    +++P Y F  + GY T  H   +  
Sbjct: 176 IGQTSIIKGDANSLSIAAASIVAKVTRDKMMADYDQEFPGYAFAKNAGYGTKDHLSGLDN 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR +F P++++
Sbjct: 236 FGVTPIHRRSFEPIKSI 252


>gi|238918789|ref|YP_002932303.1| ribonuclease HII [Edwardsiella ictaluri 93-146]
 gi|259494064|sp|C5B7S2|RNH2_EDWI9 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238868357|gb|ACR68068.1| ribonuclease HII [Edwardsiella ictaluri 93-146]
          Length = 197

 Score =  254 bits (650), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 87/185 (47%), Positives = 115/185 (62%), Gaps = 2/185 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++I   A+  S
Sbjct: 11  GRIAGVDEVGRGPLVGAVVTAAVILDPARPIAGLADSKKLSEKRRNALYDEIVEKALCWS 70

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A  + ID+ NI +AT+ A+  AV  L   P   LIDG   P  LP  A AV+KGDS 
Sbjct: 71  LGRAEAEEIDRLNILQATMVAMQRAVAGLARQPDFVLIDGNRCPA-LPMAAQAVVKGDSR 129

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRDR M    ++YP+YGF  H GYPTA H + +   G +  HR +F 
Sbjct: 130 VAEISAASILAKVTRDREMAALDRQYPEYGFARHKGYPTALHLERLAALGATEHHRRSFG 189

Query: 203 PLRNL 207
           P++ +
Sbjct: 190 PVKRV 194


>gi|15676119|ref|NP_273250.1| ribonuclease HII [Neisseria meningitidis MC58]
 gi|11387100|sp|Q9K1G1|RNH2_NEIMB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|7225412|gb|AAF40649.1| ribonuclease HII [Neisseria meningitidis MC58]
 gi|316985719|gb|EFV64665.1| ribonuclease HII family protein [Neisseria meningitidis H44/76]
 gi|325135118|gb|EGC57745.1| ribonuclease HII [Neisseria meningitidis M13399]
 gi|325199404|gb|ADY94859.1| ribonuclease HII [Neisseria meningitidis H44/76]
          Length = 194

 Score =  254 bits (650), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 81/182 (44%), Positives = 109/182 (59%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG L G V  AA+IL       G+ DSKK+S KKR+ L E I + A+   +++
Sbjct: 6   AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKNQAVEWHVAA 65

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           AS + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  + 
Sbjct: 66  ASPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AAS++AK  RD  M    +++P YGFD H GY T +H + +++ G    HR  F P+R
Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALEKYGVLPEHRRDFAPVR 185

Query: 206 NL 207
           NL
Sbjct: 186 NL 187


>gi|146276125|ref|YP_001166284.1| ribonuclease HII [Rhodobacter sphaeroides ATCC 17025]
 gi|166226645|sp|A4WNL5|RNH2_RHOS5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|145554366|gb|ABP68979.1| Ribonuclease H [Rhodobacter sphaeroides ATCC 17025]
          Length = 212

 Score =  254 bits (650), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 84/198 (42%), Positives = 124/198 (62%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P +  E+    +    + G+DEVGRG LAGPV  AA+ L P  IP G+NDSKK+   +RE
Sbjct: 6   PDWSHESAAFAEGFTCIVGVDEVGRGPLAGPVTAAAVRLFPGRIPEGLNDSKKLPAARRE 65

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L  +I + A +S++ AS + ID+ NI +A+  A+  A+  L   P  ALIDG  IP+ L
Sbjct: 66  ALAAEILAVAEVSVAHASVEEIDRLNILQASHLAMARALAGLPCPPDFALIDGHLIPKGL 125

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             +  A++KGD++ LSIAAASI+AKV RDR+M    +++P YG+ ++ GY T  H Q + 
Sbjct: 126 AHRCRAIVKGDALCLSIAAASIVAKVARDRIMVDLEQQHPGYGWRTNAGYGTRDHLQALL 185

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G +  HR +F+P+ N+
Sbjct: 186 NLGLTPHHRRSFKPVHNI 203


>gi|187924419|ref|YP_001896061.1| ribonuclease HII [Burkholderia phytofirmans PsJN]
 gi|238689609|sp|B2T5I0|RNH2_BURPP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|187715613|gb|ACD16837.1| Ribonuclease H [Burkholderia phytofirmans PsJN]
          Length = 248

 Score =  254 bits (650), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 88/184 (47%), Positives = 122/184 (66%), Gaps = 3/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-IS 82
            V G+DE GRG LAGPVV AA+I DP+     G++DSK ++ KKR+ELY+KI   A+   
Sbjct: 30  IVCGVDEAGRGPLAGPVVAAAVIFDPSKPMIRGLDDSKVLTAKKRDELYDKIVDRALAYC 89

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+SA+ + ID  NI  AT+ A+  AVE L V+P    IDG   P  L  ++ AVI GD++
Sbjct: 90  IASATVEEIDSLNILHATMLAMKRAVEGLSVVPTLVKIDGNRCPT-LSVRSEAVIGGDAL 148

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             SI+AASI+AKVTRDR++   H+ +P YGF++H GY T +H + ++E GP   HR +F 
Sbjct: 149 VKSISAASILAKVTRDRMLLELHQTHPVYGFNAHAGYGTPQHLKALREHGPCEHHRRSFA 208

Query: 203 PLRN 206
           P+R 
Sbjct: 209 PVRE 212


>gi|156935301|ref|YP_001439217.1| ribonuclease HII [Cronobacter sakazakii ATCC BAA-894]
 gi|166225185|sp|A7MI15|RNH2_ENTS8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|156533555|gb|ABU78381.1| hypothetical protein ESA_03158 [Cronobacter sakazakii ATCC BAA-894]
          Length = 198

 Score =  254 bits (650), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 87/183 (47%), Positives = 110/183 (60%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  L+++I   AI  S+
Sbjct: 11  LVAGVDEVGRGPLVGAVVTAAVILDPLKPIVGLADSKKLSEKRRLALFDEIKEKAIAWSL 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID+ NI  AT+ A+  AV  L V P   L+DG   P  LP  + AV+KGDS  
Sbjct: 71  GRAEPHEIDELNILHATMLAMQRAVAGLAVTPEYVLVDGNRCPA-LPMPSMAVVKGDSRV 129

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F P
Sbjct: 130 AEISAASILAKVTRDAEMAELDLTFPQYGFAQHKGYPTAFHLERLAEHGATAHHRRSFAP 189

Query: 204 LRN 206
           +R 
Sbjct: 190 VRR 192


>gi|62178800|ref|YP_215217.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161612603|ref|YP_001586568.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167553356|ref|ZP_02347105.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|168235010|ref|ZP_02660068.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168264638|ref|ZP_02686611.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|168464205|ref|ZP_02698108.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168823100|ref|ZP_02835100.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194734669|ref|YP_002113253.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197249555|ref|YP_002145235.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|204926664|ref|ZP_03217866.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205351567|ref|YP_002225368.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|224582078|ref|YP_002635876.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|73917832|sp|Q57T25|RNH2_SALCH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|189043655|sp|A9N0T3|RNH2_SALPB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238689765|sp|B4TYE3|RNH2_SALSV RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238690066|sp|B5F8U4|RNH2_SALA4 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238690468|sp|B5R5I6|RNH2_SALG2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807986|sp|C0Q6K6|RNH2_SALPC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|62126433|gb|AAX64136.1| RNAse HII [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. SC-B67]
 gi|161361967|gb|ABX65735.1| hypothetical protein SPAB_00294 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194710171|gb|ACF89392.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195632881|gb|EDX51335.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197213258|gb|ACH50655.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197291997|gb|EDY31347.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204323329|gb|EDZ08524.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205271348|emb|CAR36141.1| Ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205322169|gb|EDZ10008.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205340607|gb|EDZ27371.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205346925|gb|EDZ33556.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|224466605|gb|ACN44435.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|320084484|emb|CBY94277.1| RNAse HII [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|322616054|gb|EFY12971.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322620837|gb|EFY17697.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322623812|gb|EFY20649.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322627260|gb|EFY24051.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322630567|gb|EFY27331.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322638215|gb|EFY34916.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640700|gb|EFY37351.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322645516|gb|EFY42043.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322648190|gb|EFY44657.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322657141|gb|EFY53424.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322657511|gb|EFY53783.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322663831|gb|EFY60031.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322666664|gb|EFY62842.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322672178|gb|EFY68290.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322676511|gb|EFY72582.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322679397|gb|EFY75442.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322686276|gb|EFY82260.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|322713254|gb|EFZ04825.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323193456|gb|EFZ78664.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323197522|gb|EFZ82657.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323201209|gb|EFZ86278.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323209604|gb|EFZ94537.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323212144|gb|EFZ96968.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323216449|gb|EGA01175.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323223361|gb|EGA07696.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225922|gb|EGA10142.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323228537|gb|EGA12666.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236850|gb|EGA20926.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323239650|gb|EGA23697.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323242303|gb|EGA26332.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249965|gb|EGA33861.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323252395|gb|EGA36246.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323255678|gb|EGA39431.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323262885|gb|EGA46435.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323265371|gb|EGA48867.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323271842|gb|EGA55260.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326626594|gb|EGE32937.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 198

 Score =  254 bits (650), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 86/183 (46%), Positives = 111/183 (60%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  LY++I   A+  S+
Sbjct: 11  LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLSLYDEIKEKALSWSL 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID+ NI  AT+ A+  AV  L + P   LIDG   P  LP  + AV+KGDS  
Sbjct: 71  GRAEAHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPA-LPVPSMAVVKGDSRV 129

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + + G +  HR +F P
Sbjct: 130 AEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAQYGATAHHRRSFAP 189

Query: 204 LRN 206
           ++ 
Sbjct: 190 VKR 192


>gi|114769695|ref|ZP_01447305.1| ribonuclease HII [alpha proteobacterium HTCC2255]
 gi|114549400|gb|EAU52282.1| ribonuclease HII [alpha proteobacterium HTCC2255]
          Length = 210

 Score =  254 bits (650), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 91/197 (46%), Positives = 126/197 (63%), Gaps = 1/197 (0%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           ++ +E  +R      + G+DEVGRG  AGPV   A+ILDP NIP G+NDSKK++ K+R +
Sbjct: 7   NYNIENSLRPNGNEVIMGVDEVGRGPWAGPVTACAVILDPENIPPGLNDSKKLNVKQRTK 66

Query: 71  LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           L+E I +S+++S        IDK NI +AT  A+  ++  L + P   LIDG  +P +LP
Sbjct: 67  LFEDIMNSSLVSCVHVDVGEIDKINILQATFRAMERSISKLPI-PDHILIDGNKLPPNLP 125

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             A A+IKGDS S SIAAASIIAKVTRDRLM     +YP YG++ + GY T  HQ  +  
Sbjct: 126 SPATAIIKGDSKSASIAAASIIAKVTRDRLMADLSVEYPGYGWEKNAGYGTKMHQSGLLN 185

Query: 191 KGPSCIHRLTFRPLRNL 207
            G +  HR +F+P+ N+
Sbjct: 186 NGVTPHHRRSFKPIHNM 202


>gi|325579117|ref|ZP_08149073.1| ribonuclease HII [Haemophilus parainfluenzae ATCC 33392]
 gi|325159352|gb|EGC71486.1| ribonuclease HII [Haemophilus parainfluenzae ATCC 33392]
          Length = 200

 Score =  254 bits (649), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 83/187 (44%), Positives = 114/187 (60%), Gaps = 1/187 (0%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +    VAG+DEVGRG L G VV AA+ILDPN    G+ DSKK+S KKR  L  +I   A+
Sbjct: 8   EGYQLVAGVDEVGRGPLVGAVVTAAVILDPNKPIAGLADSKKLSEKKRLALAAEIKEKAL 67

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             ++  A    ID+ NI  A++ A+  AV+ L++ P   L+DG  IP +L   A AV+KG
Sbjct: 68  AWAMGRAEPAEIDELNILHASMLAMERAVKALKIQPHFVLVDGNRIPPNLGFPAQAVVKG 127

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DS+   I+AASI+AKV RD+ M    K +P+Y F  H GYPT  H + + E GP   +R 
Sbjct: 128 DSLVAEISAASILAKVARDQEMEELDKNHPEYAFAQHKGYPTKLHLEKLAELGPLPEYRR 187

Query: 200 TFRPLRN 206
           +F P++ 
Sbjct: 188 SFSPVKK 194


>gi|325519162|gb|EGC98633.1| ribonuclease HII [Burkholderia sp. TJI49]
          Length = 214

 Score =  254 bits (649), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 89/183 (48%), Positives = 120/183 (65%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKR+ LYE I + ++   +
Sbjct: 27  IVCGVDEAGRGPLAGPVVAAAVILDPAQPIEGLDDSKALSAKKRDALYELIIARSVSYCV 86

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS   ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  +A A++ GD++ 
Sbjct: 87  ASASVDEIDTLNILHATMLAMKRAVEGLAVLPTLAQIDGNRCPT-LSVRAEAIVSGDALV 145

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+++P YGF+ H GY T KH   ++E GP   HR +F P
Sbjct: 146 PSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTPKHLAALREHGPCEAHRRSFAP 205

Query: 204 LRN 206
           +R 
Sbjct: 206 VRE 208


>gi|146318650|ref|YP_001198362.1| ribonuclease HII [Streptococcus suis 05ZYH33]
 gi|146320856|ref|YP_001200567.1| ribonuclease HII [Streptococcus suis 98HAH33]
 gi|253751769|ref|YP_003024910.1| ribonuclease HII [Streptococcus suis SC84]
 gi|253753593|ref|YP_003026734.1| ribonuclease HII [Streptococcus suis P1/7]
 gi|253755526|ref|YP_003028666.1| ribonuclease HII [Streptococcus suis BM407]
 gi|166226663|sp|A4W1C8|RNH2_STRS2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166226665|sp|A4VV23|RNH2_STRSY RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|145689456|gb|ABP89962.1| Ribonuclease HII [Streptococcus suis 05ZYH33]
 gi|145691662|gb|ABP92167.1| Ribonuclease HII [Streptococcus suis 98HAH33]
 gi|251816058|emb|CAZ51678.1| ribonuclease HII [Streptococcus suis SC84]
 gi|251817990|emb|CAZ55772.1| ribonuclease HII [Streptococcus suis BM407]
 gi|251819839|emb|CAR45820.1| ribonuclease HII [Streptococcus suis P1/7]
 gi|292558337|gb|ADE31338.1| Ribonuclease H [Streptococcus suis GZ1]
 gi|319758118|gb|ADV70060.1| ribonuclease HII [Streptococcus suis JS14]
          Length = 257

 Score =  254 bits (649), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 81/195 (41%), Positives = 117/195 (60%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  + E  +  +AGIDEVGRG LAGPVV AA+IL        +NDSKKI   K E +Y+
Sbjct: 60  YEKSLYENGVEFIAGIDEVGRGPLAGPVVAAAVILPKGCKIRYLNDSKKIPKSKHEAIYQ 119

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           ++   A+ + +       ID+ NI++AT  A+  A+  L   P   LID   +  D P  
Sbjct: 120 EVMERAVAVGVGIKDAALIDEVNIYEATKLAMLEALGKLSQKPDHLLIDAMKL--DTPIP 177

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ SLSIAAASI+AKVTRD++M    K++  YGF  + GY T +H + + + G
Sbjct: 178 QTSIIKGDANSLSIAAASIVAKVTRDKMMADYDKEFSGYGFAKNAGYGTTEHLEGLNKLG 237

Query: 193 PSCIHRLTFRPLRNL 207
            + IHR TF P++++
Sbjct: 238 ITPIHRKTFEPIKSM 252


>gi|315652839|ref|ZP_07905813.1| ribonuclease HII [Eubacterium saburreum DSM 3986]
 gi|315485041|gb|EFU75449.1| ribonuclease HII [Eubacterium saburreum DSM 3986]
          Length = 214

 Score =  254 bits (649), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 87/190 (45%), Positives = 121/190 (63%), Gaps = 4/190 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E      +   +AGIDE GRG LAGPVV AA+IL  +     +NDSKK++ K+R+ L+
Sbjct: 21  EFENKY--SDFEFIAGIDEAGRGPLAGPVVAAAVILPKDIFLPFLNDSKKVTEKRRDVLF 78

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           ++I   A+   I  AS+  ID+ NI +AT +A+  A++ L+  P   L+D   IP D+  
Sbjct: 79  DRIKQEALAYGIGIASNVLIDEINILQATYEAMREAIKKLKKTPDILLVDAVHIP-DITI 137

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   ++KGD+ S++IAAASI+AKVTRDRLM    K YP+YGF  + GY TAKH + +KE 
Sbjct: 138 RQLGIVKGDARSINIAAASILAKVTRDRLMLEYDKIYPEYGFAYNKGYGTAKHIEALKEY 197

Query: 192 GPSCIHRLTF 201
           G   IHR TF
Sbjct: 198 GACDIHRRTF 207


>gi|293394717|ref|ZP_06639009.1| ribonuclease HII [Serratia odorifera DSM 4582]
 gi|291422843|gb|EFE96080.1| ribonuclease HII [Serratia odorifera DSM 4582]
          Length = 202

 Score =  254 bits (649), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 86/184 (46%), Positives = 111/184 (60%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82
             +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++I   A   S
Sbjct: 11  QCIAGVDEVGRGPLVGAVVTAAVILDPARPIVGLADSKKLSEKRRLALYDEIIDKAQAWS 70

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A    ID  NI  AT+ A+  AV  L + P   LIDG   P+ LP ++ AV+KGDS 
Sbjct: 71  LGRAEPAEIDSLNILHATMLAMQRAVAGLAITPDLVLIDGNRCPK-LPMRSQAVVKGDSR 129

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRDR M      +P YGF  H GYPTA H + + + G +  HR +F 
Sbjct: 130 VAEISAASILAKVTRDREMAELDLSFPAYGFAQHKGYPTAFHLEKLAQYGATQHHRRSFA 189

Query: 203 PLRN 206
           P+R 
Sbjct: 190 PVRR 193


>gi|304388999|ref|ZP_07371046.1| ribonuclease HII [Neisseria meningitidis ATCC 13091]
 gi|304337133|gb|EFM03320.1| ribonuclease HII [Neisseria meningitidis ATCC 13091]
          Length = 194

 Score =  254 bits (649), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 82/182 (45%), Positives = 108/182 (59%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG L G V  AA+IL       G+ DSKK+S KKR+ L E I + A    +S+
Sbjct: 6   AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDTLAEMIKNQAAAWHVSA 65

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A+ + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  + 
Sbjct: 66  ATPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P+R
Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185

Query: 206 NL 207
           NL
Sbjct: 186 NL 187


>gi|227543435|ref|ZP_03973484.1| ribonuclease H [Lactobacillus reuteri CF48-3A]
 gi|300910102|ref|ZP_07127562.1| ribonuclease H [Lactobacillus reuteri SD2112]
 gi|227186587|gb|EEI66658.1| ribonuclease H [Lactobacillus reuteri CF48-3A]
 gi|300892750|gb|EFK86110.1| ribonuclease H [Lactobacillus reuteri SD2112]
          Length = 256

 Score =  254 bits (649), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 80/195 (41%), Positives = 115/195 (58%), Gaps = 3/195 (1%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F+ E    EK    VAG+DEVGRG LAGPVV   +IL+ +    G+ DSK+++  +RE 
Sbjct: 59  RFKYEKYYWEKGYQYVAGMDEVGRGPLAGPVVTCVVILNADFDLIGVTDSKQLTRHEREN 118

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY +I   A+ +SI+      ID+ NI+ AT DA+  AV +L   P   ++D   +P  +
Sbjct: 119 LYLRIVDEAVEVSIAVNDAPVIDQMNIYAATQDAMIRAVNHLHHRPDHLIVDA--VPLAI 176

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                 +IKGD  S+S+AAASI+AK  RD LMR     YP YGF  ++GY T +H   ++
Sbjct: 177 DIPQTTLIKGDQKSISVAAASIVAKEYRDHLMRDYDYVYPGYGFAQNMGYGTKEHLAGLE 236

Query: 190 EKGPSCIHRLTFRPL 204
           + G + IHR +F P+
Sbjct: 237 KMGATPIHRRSFNPV 251


>gi|227515157|ref|ZP_03945206.1| ribonuclease H [Lactobacillus fermentum ATCC 14931]
 gi|227086489|gb|EEI21801.1| ribonuclease H [Lactobacillus fermentum ATCC 14931]
          Length = 256

 Score =  254 bits (649), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 84/195 (43%), Positives = 119/195 (61%), Gaps = 3/195 (1%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E  + +     VAGIDEVGRG LAGPVV  A++LD      G+ DSK++S  +RE+
Sbjct: 59  RFRYENQLWQAGHQYVAGIDEVGRGPLAGPVVTCAVVLDSQFDLVGVTDSKQLSRHEREQ 118

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY +I   A+ +S++ +  Q ID+ NI+ AT  A+  +V+ L   P   ++D   +P D+
Sbjct: 119 LYLRILDEAVEVSLAVSPAQEIDRLNIYAATQAAMIRSVKALHHQPSHLIVDA--VPLDI 176

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +IKGD  S+S+AAASI+AK  RD LM I  + YP YGF  ++GY TA H   ++
Sbjct: 177 PVPQTTLIKGDQKSISVAAASIVAKEYRDHLMAIYDRLYPGYGFKDNMGYGTAAHLAGLE 236

Query: 190 EKGPSCIHRLTFRPL 204
           + G   IHR TFRP+
Sbjct: 237 QLGACPIHRRTFRPV 251


>gi|91788543|ref|YP_549495.1| ribonuclease HII [Polaromonas sp. JS666]
 gi|123164802|sp|Q12A45|RNH2_POLSJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|91697768|gb|ABE44597.1| RNase HII [Polaromonas sp. JS666]
          Length = 199

 Score =  254 bits (649), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 85/182 (46%), Positives = 120/182 (65%), Gaps = 2/182 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82
             +AG+DE GRG L GPVV AA+ILD  N   G+ DSKK++ ++RE LY++I + A+  S
Sbjct: 14  GLLAGVDEAGRGPLMGPVVAAAVILDELNPIKGLADSKKLTPQRREALYDEIRAKALCCS 73

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+ A+ + ID+ NI +AT+ A+  AVE+L++ P   L+DG  +P  L   + AVI GD+I
Sbjct: 74  IALATAEEIDRLNILQATMLAMRRAVESLRLKPNKVLVDGNRLPT-LAIVSEAVIGGDAI 132

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +I+AASI+AKV RDR     H +YP YGF SH GY TA+H   ++E G    HR +F 
Sbjct: 133 VPAISAASILAKVYRDRWCAEFHLEYPQYGFASHKGYSTAEHLAALREHGACPQHRRSFA 192

Query: 203 PL 204
           P+
Sbjct: 193 PV 194


>gi|29348821|ref|NP_812324.1| ribonuclease HII [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568833|ref|ZP_04846243.1| ribonuclease HII [Bacteroides sp. 1_1_6]
 gi|298387905|ref|ZP_06997454.1| ribonuclease HII [Bacteroides sp. 1_1_14]
 gi|39932389|sp|Q8A293|RNH2_BACTN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|29340727|gb|AAO78518.1| ribonuclease HII [Bacteroides thetaiotaomicron VPI-5482]
 gi|251840852|gb|EES68933.1| ribonuclease HII [Bacteroides sp. 1_1_6]
 gi|298259312|gb|EFI02187.1| ribonuclease HII [Bacteroides sp. 1_1_14]
          Length = 200

 Score =  254 bits (649), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 77/179 (43%), Positives = 105/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++ K+R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + ID+ NI +A+  A++ AV+ L V P+  LIDG    +        VIKGD   LS
Sbjct: 73  VSPEEIDEINILRASFLAMHRAVDQLSVRPQHLLIDGNRFNKYPDIPHTTVIKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H++YP Y ++ + GYPT KH+  I E G +  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPFYDWNKNKGYPTKKHRAAIAEHGTTPYHRMTFNLL 191


>gi|331002666|ref|ZP_08326181.1| ribonuclease HII [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330407079|gb|EGG86583.1| ribonuclease HII [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 214

 Score =  254 bits (649), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 86/190 (45%), Positives = 120/190 (63%), Gaps = 4/190 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E      ++  +AG+DE GRG LAGPVV AA+IL  +     +NDSKK++ K+R+ L+
Sbjct: 21  EFENKY--SDLAYIAGLDEAGRGPLAGPVVAAAVILPKDIFLPFLNDSKKVTEKRRDVLF 78

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           ++I  +AI   I  AS+  ID+ NI +AT +A+  A+  L   P   L+D   IP  +  
Sbjct: 79  DEIKQNAIAYGIGIASNTLIDEINILQATYEAMREAINALSTRPDILLVDAIHIP-GIDI 137

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   ++KGD+ S++IAAASI+AKVTRDRLM    K YP+YGF S+ GY TA H   +KE 
Sbjct: 138 RQVGIVKGDAKSVNIAAASILAKVTRDRLMAEYDKIYPEYGFASNKGYGTAAHIAALKEY 197

Query: 192 GPSCIHRLTF 201
           GP  IHR +F
Sbjct: 198 GPCEIHRKSF 207


>gi|119471147|ref|ZP_01613679.1| RNAse HII [Alteromonadales bacterium TW-7]
 gi|119445803|gb|EAW27085.1| RNAse HII [Alteromonadales bacterium TW-7]
          Length = 201

 Score =  253 bits (648), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 82/192 (42%), Positives = 113/192 (58%), Gaps = 2/192 (1%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76
            +   N+  +AG+DEVGRG L G VV AA+ILDP     G+ DSKK++ KKR+ L  +I 
Sbjct: 2   QIERPNVTLIAGVDEVGRGPLVGDVVTAAVILDPTKPIAGLADSKKLTDKKRQALATEIK 61

Query: 77  SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135
            +A+  +    S   ID  NI  AT+ A+  AVE L   P    IDG  +P+ L   A A
Sbjct: 62  ENALCYAYGRCSPSEIDDLNILHATMLAMSRAVEGLSTQPEFVFIDGNRLPK-LAMPAQA 120

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           V+KGDS+   I+AASI+AKV RD  M    K++P YGF  H GYPT  H   +++ G   
Sbjct: 121 VVKGDSLVAEISAASILAKVARDDEMLELDKRHPQYGFAGHKGYPTKAHFAALEQYGAID 180

Query: 196 IHRLTFRPLRNL 207
            HR +F+P++ +
Sbjct: 181 EHRKSFKPVQRV 192


>gi|325129110|gb|EGC51959.1| ribonuclease HII [Neisseria meningitidis N1568]
          Length = 194

 Score =  253 bits (648), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 81/182 (44%), Positives = 109/182 (59%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG L G V  AA+IL       G+ DSKK+S KKR+ L E I + A+   +++
Sbjct: 6   AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKNQAVAWHVAA 65

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A+ + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  + 
Sbjct: 66  ATPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P+R
Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185

Query: 206 NL 207
           NL
Sbjct: 186 NL 187


>gi|225025287|ref|ZP_03714479.1| hypothetical protein EIKCOROL_02184 [Eikenella corrodens ATCC
           23834]
 gi|224941905|gb|EEG23114.1| hypothetical protein EIKCOROL_02184 [Eikenella corrodens ATCC
           23834]
          Length = 194

 Score =  253 bits (648), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 78/182 (42%), Positives = 111/182 (60%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG L G V  AA++L       G+ DSKK+S ++R+EL   I   A+   +++
Sbjct: 5   AGVDEAGRGPLVGSVFAAAVVLPNEYDLPGLTDSKKLSERRRDELAVLIKQQALAWCVAA 64

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           AS + ID+ NI  AT+ A+  AV  L+ +P    IDG  +P DL C+A AVIKGDS  + 
Sbjct: 65  ASVEEIDRLNILHATMLAMRRAVHGLERLPEKVWIDGNRVPPDLGCEAEAVIKGDSKIIQ 124

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AAS++AK  RD  M    ++YP YGF+ H GY TA+H   ++  G    HR +F P+R
Sbjct: 125 ISAASVLAKTARDAEMYALAERYPQYGFERHKGYGTAEHLAALQRHGALPEHRRSFAPVR 184

Query: 206 NL 207
            +
Sbjct: 185 EI 186


>gi|254252072|ref|ZP_04945390.1| Ribonuclease H [Burkholderia dolosa AUO158]
 gi|124894681|gb|EAY68561.1| Ribonuclease H [Burkholderia dolosa AUO158]
          Length = 215

 Score =  253 bits (648), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 87/182 (47%), Positives = 119/182 (65%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            V G+DE GRG LAGPVV AA+IL+P     G++DSK +S KKR+ LYE I   ++   +
Sbjct: 28  IVCGVDEAGRGPLAGPVVAAAVILNPERPIDGLDDSKVLSAKKRDALYELIVERSLAYCV 87

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS   ID  NI  AT+ A+  AVE L ++P  A IDG   P  L  +A A++ GD++ 
Sbjct: 88  ASASVDEIDTLNILHATMLAMKRAVEGLSILPTLAQIDGNRCPT-LSVRAEAIVSGDALV 146

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+++P YGF+ H GY T KH   ++E GP   HR +F P
Sbjct: 147 PSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTEKHLAALREHGPCEAHRRSFAP 206

Query: 204 LR 205
           +R
Sbjct: 207 VR 208


>gi|210615856|ref|ZP_03290818.1| hypothetical protein CLONEX_03037 [Clostridium nexile DSM 1787]
 gi|210150059|gb|EEA81068.1| hypothetical protein CLONEX_03037 [Clostridium nexile DSM 1787]
          Length = 252

 Score =  253 bits (648), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 86/186 (46%), Positives = 115/186 (61%), Gaps = 4/186 (2%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII- 81
              + GIDEVGRG LAGPVV  A+IL  +     +NDSKK+S K+REELY++I   AI  
Sbjct: 69  FSYICGIDEVGRGPLAGPVVAGAVILPKDCEILYLNDSKKLSEKRREELYDEIMEKAIAT 128

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
            I   S   ID+ NI +AT +A+  A++ L+  P   L D  +IP  +      +IKGD+
Sbjct: 129 GIGIVSPARIDEINILQATYEAMRIAIQQLETEPDLLLNDAVTIP-GVTIDQVPIIKGDA 187

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            S+SIAAASIIAKVTRDRLM       P YGF S+ GY +A+H   +K  G + IHR++F
Sbjct: 188 KSVSIAAASIIAKVTRDRLMVQYDDVLPGYGFASNKGYGSAEHITALKTLGATPIHRMSF 247

Query: 202 RPLRNL 207
             ++N 
Sbjct: 248 --IKNF 251


>gi|308388411|gb|ADO30731.1| ribonuclease HII [Neisseria meningitidis alpha710]
 gi|325131049|gb|EGC53774.1| ribonuclease HII [Neisseria meningitidis OX99.30304]
 gi|325137025|gb|EGC59621.1| ribonuclease HII [Neisseria meningitidis M0579]
 gi|325145388|gb|EGC67665.1| ribonuclease HII [Neisseria meningitidis M01-240013]
 gi|325202973|gb|ADY98427.1| ribonuclease HII [Neisseria meningitidis M01-240149]
 gi|325205284|gb|ADZ00737.1| ribonuclease HII [Neisseria meningitidis M04-240196]
 gi|325207229|gb|ADZ02681.1| ribonuclease HII [Neisseria meningitidis NZ-05/33]
          Length = 194

 Score =  253 bits (648), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 82/182 (45%), Positives = 109/182 (59%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG L G V  AA+IL       G+ DSKK+S KKR+ L E I + A+   +++
Sbjct: 6   AGVDEAGRGPLVGSVFAAAVILPEIFDLPGLTDSKKLSEKKRDALAEMIKNQAVAWHVAA 65

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           AS + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  + 
Sbjct: 66  ASPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P+R
Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185

Query: 206 NL 207
           NL
Sbjct: 186 NL 187


>gi|254293355|ref|YP_003059378.1| ribonuclease H [Hirschia baltica ATCC 49814]
 gi|254041886|gb|ACT58681.1| Ribonuclease H [Hirschia baltica ATCC 49814]
          Length = 194

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 84/182 (46%), Positives = 108/182 (59%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            + G+DE GRG  AGPV   A+IL+P N   G+NDSKK+S KKR++L   I   A+  SI
Sbjct: 6   LICGVDEAGRGPWAGPVCAGAVILNPLNPIAGLNDSKKLSEKKRDKLALLIKEYALCWSI 65

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             AS + ID+ NI +A   A+  AV+ L + P  ALIDG   P  L C+   +I GD I 
Sbjct: 66  GWASPEEIDELNIRQANHLAMQRAVQGLSIAPDLALIDGNDAPP-LDCRTETLIGGDGIE 124

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AK  RD  M     +YPDYGF  H GY    H   +K  GP  IHR+TF+P
Sbjct: 125 ACISAASILAKTARDAKMVEYDLQYPDYGFAKHKGYGVKAHSDALKRIGPCPIHRMTFKP 184

Query: 204 LR 205
           +R
Sbjct: 185 VR 186


>gi|294635136|ref|ZP_06713646.1| ribonuclease HII [Edwardsiella tarda ATCC 23685]
 gi|291091472|gb|EFE24033.1| ribonuclease HII [Edwardsiella tarda ATCC 23685]
          Length = 197

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 88/184 (47%), Positives = 115/184 (62%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++I   A+  S+
Sbjct: 12  RIAGVDEVGRGPLVGAVVTAAVILDPARPIRGLADSKKLSEKRRNALYDEIVEKALCWSL 71

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID+ NI +AT+ A+  AV  L + P   LIDG   P  LP  A AV+KGDS  
Sbjct: 72  GRAEPEEIDRLNILQATMVAMQRAVAGLTLPPDLVLIDGNRCPA-LPMAAQAVVKGDSRV 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M    ++YP YGF  H GYPTA H   + E G +  HR +F P
Sbjct: 131 AEISAASILAKVTRDREMAALDRQYPAYGFAQHKGYPTALHLARLAELGATDQHRRSFAP 190

Query: 204 LRNL 207
           ++ +
Sbjct: 191 VKRV 194


>gi|220934349|ref|YP_002513248.1| Ribonuclease H [Thioalkalivibrio sp. HL-EbGR7]
 gi|254808004|sp|B8GQ66|RNH2_THISH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|219995659|gb|ACL72261.1| Ribonuclease H [Thioalkalivibrio sp. HL-EbGR7]
          Length = 202

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 93/195 (47%), Positives = 124/195 (63%), Gaps = 5/195 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           +LEA +    +  VAG+DEVGRG LAGPVV AA+ILDP     G+ DSKK+S  +RE L 
Sbjct: 2   DLEAWL---GLPGVAGVDEVGRGPLAGPVVAAAVILDPARPIDGLKDSKKLSPARREALD 58

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I   ++  ++   +   ID+ NI +A+L A+  AVE L   P  AL+DG   P+ L  
Sbjct: 59  VQIRERSLAFALGLCTPAEIDRINILQASLLAMQRAVEALSHRPEMALVDGNRCPK-LTM 117

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
            A AVIKGDS   +I+AASIIAKV RDRLM    +++P YG  SH+GYPT  H + ++  
Sbjct: 118 TAHAVIKGDSRVPAISAASIIAKVHRDRLMLALDEQHPGYGLGSHMGYPTPVHLEALERL 177

Query: 192 GPSCIHRLTFRPLRN 206
           GPS  HRL+F P+R 
Sbjct: 178 GPSPCHRLSFAPVRR 192


>gi|307824003|ref|ZP_07654230.1| Ribonuclease H [Methylobacter tundripaludum SV96]
 gi|307734787|gb|EFO05637.1| Ribonuclease H [Methylobacter tundripaludum SV96]
          Length = 203

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 86/186 (46%), Positives = 116/186 (62%), Gaps = 2/186 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DE GRG LAGPV  AA+ILDP     G+ DSK +S  KR  LY  I  +A+  SI
Sbjct: 14  IVAGVDEAGRGPLAGPVFAAAVILDPMRPIAGLADSKILSESKRNSLYIIIKEAALSWSI 73

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A    ID  NI +ATL A+  AVE L + P   L+DG  +P+ L   A A++KGDS  
Sbjct: 74  AQAGVDEIDGLNILQATLLAMQRAVEGLNIQPDEVLVDGNRLPK-LSMPAQAIVKGDSKV 132

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AKV RD+LM   H++YPD+ F  H GY T +H   I++ G   +HR TF P
Sbjct: 133 QAISAASILAKVERDKLMVDYHQQYPDFAFHVHKGYGTKQHLAEIEQFGFLAVHRRTFNP 192

Query: 204 LRNLSV 209
           ++ + +
Sbjct: 193 VKTMLI 198


>gi|170692156|ref|ZP_02883319.1| Ribonuclease H [Burkholderia graminis C4D1M]
 gi|170142586|gb|EDT10751.1| Ribonuclease H [Burkholderia graminis C4D1M]
          Length = 273

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 88/184 (47%), Positives = 120/184 (65%), Gaps = 3/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-IS 82
            V G+DE GRG LAGPVV AA+I DP+     G++DSK ++ KKR+ELYEKI   A+   
Sbjct: 47  IVCGVDEAGRGPLAGPVVAAAVIFDPSKPMIRGLDDSKVLTAKKRDELYEKIVDRALAYC 106

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+SA+ + ID  NI  AT+ A+  AVE L V P    +DG   P  L  ++ AVI GD++
Sbjct: 107 IASATVEEIDTLNILHATMLAMKRAVEGLSVTPTLVKVDGNRCPM-LSVRSEAVIGGDAL 165

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             SI+AASI+AKVTRDR++   H+ +P YGF++H GY T +H   ++E GP   HR +F 
Sbjct: 166 VKSISAASILAKVTRDRMLLELHQTHPVYGFNAHAGYGTPQHLAALREHGPCEHHRRSFA 225

Query: 203 PLRN 206
           P+R 
Sbjct: 226 PVRE 229


>gi|152980735|ref|YP_001353734.1| ribonuclease HII [Janthinobacterium sp. Marseille]
 gi|166225192|sp|A6SZN7|RNH2_JANMA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|151280812|gb|ABR89222.1| ribonuclease HII [Janthinobacterium sp. Marseille]
          Length = 210

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 87/202 (43%), Positives = 122/202 (60%), Gaps = 5/202 (2%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
            E P+  L + + E     + G+DE GRG LAGPV  AA+ILDP     G+ DSKK++  
Sbjct: 3   KEDPNLSLFSFLDED---IICGVDEAGRGPLAGPVFAAAVILDPMRPIDGLRDSKKLTEV 59

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           KR+ L  +I   A+  SI+  S + ID  NI +AT+ A+  A+E L V+P  ALIDG   
Sbjct: 60  KRDALAIEIKQYALSWSIAQCSEEEIDSLNILQATMLAMRRAIEGLHVVPTLALIDGNRC 119

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P     ++ A+IKGD    +I+AASI+AK  RD  + + H +YP Y FD H GYPTA H 
Sbjct: 120 PVT-SVRSEAIIKGDDKVQAISAASILAKTARDHALGLLHIQYPHYAFDQHKGYPTALHL 178

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
           + ++E G S +HR ++ P+R L
Sbjct: 179 ERLREHGVSPVHRKSYAPVRAL 200


>gi|296313291|ref|ZP_06863232.1| ribonuclease HII [Neisseria polysaccharea ATCC 43768]
 gi|296840213|gb|EFH24151.1| ribonuclease HII [Neisseria polysaccharea ATCC 43768]
          Length = 194

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 83/182 (45%), Positives = 108/182 (59%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG L G V  AA+IL       G+ DSKK+S KKR+ L E I S A+   I++
Sbjct: 6   AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKSQAVAWHIAA 65

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A  + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  + 
Sbjct: 66  AGPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P+R
Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185

Query: 206 NL 207
           NL
Sbjct: 186 NL 187


>gi|171779427|ref|ZP_02920391.1| hypothetical protein STRINF_01272 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282044|gb|EDT47475.1| hypothetical protein STRINF_01272 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 262

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 86/200 (43%), Positives = 121/200 (60%), Gaps = 6/200 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +     + GIDEVGRG LAGPVV A +IL  N     +NDSKKI  K  EE+
Sbjct: 61  LRYEKELYQAGYEAIGGIDEVGRGPLAGPVVTACVILPKNCKIKHLNDSKKIPKKHHEEI 120

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127
           YE++ + A+ + I    +  ID  NI++AT   +  A++ ++     P   LID   +  
Sbjct: 121 YEEVLARALGVGIGVIDNNVIDDINIYEATKVGMLQAIDQIKGQVTKPDYLLIDAMHLDT 180

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           D+P Q+  +IKGD+ SLSIAAASI+AKVTRDR+M    K+YP Y F+ +VGY T  H   
Sbjct: 181 DIPQQS--LIKGDANSLSIAAASIVAKVTRDRMMADYAKEYPGYAFEKNVGYGTKDHLVG 238

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           +KE G + IHR TF P++++
Sbjct: 239 LKEHGITPIHRKTFEPIKSM 258


>gi|153814000|ref|ZP_01966668.1| hypothetical protein RUMTOR_00207 [Ruminococcus torques ATCC 27756]
 gi|317502410|ref|ZP_07960575.1| ribonuclease [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088003|ref|ZP_08336926.1| hypothetical protein HMPREF1025_00509 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848396|gb|EDK25314.1| hypothetical protein RUMTOR_00207 [Ruminococcus torques ATCC 27756]
 gi|316896220|gb|EFV18326.1| ribonuclease [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330409314|gb|EGG88763.1| hypothetical protein HMPREF1025_00509 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 255

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 87/196 (44%), Positives = 121/196 (61%), Gaps = 6/196 (3%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E   ++  M  + GIDE GRG LAGPVV  A+IL  +     +NDSKK+S  +RE LY
Sbjct: 61  SYERKYKDAEM--ICGIDEAGRGPLAGPVVAGAVILPKDCEILYLNDSKKLSASRREALY 118

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           ++I   A+ + +  AS   ID+ NI +AT +A+  AVE L V+P   L D  +IPE +P 
Sbjct: 119 DEIMEKAVAVGVGMASPARIDEINILQATYEAMRKAVEQLSVVPDLLLNDAVTIPE-MPY 177

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   ++KGD+ S+SIAAAS+IAKVTRDRLM    K  P+YGF  + GY +  H + +K  
Sbjct: 178 RQVPIVKGDAKSVSIAAASVIAKVTRDRLMMQYDKILPEYGFAQNKGYGSQSHIEALKRV 237

Query: 192 GPSCIHRLTFRPLRNL 207
           G S IHR +F  ++N 
Sbjct: 238 GASPIHRRSF--IKNF 251


>gi|118579525|ref|YP_900775.1| ribonuclease HII [Pelobacter propionicus DSM 2379]
 gi|189043636|sp|A1AMZ7|RNH2_PELPD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|118502235|gb|ABK98717.1| RNase HII [Pelobacter propionicus DSM 2379]
          Length = 219

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 90/194 (46%), Positives = 121/194 (62%), Gaps = 2/194 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E    ++    +AGIDE GRGAL GPVV AA+IL       G++DSKK+S + RE+L++
Sbjct: 20  FEQQALKQGHRVIAGIDEAGRGALCGPVVAAAVILPTGMAIPGVDDSKKLSPRTREQLFD 79

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I + A+ + I   + Q ID+ NI +AT  A+  AV+ L   P   LIDG S   D+P  
Sbjct: 80  EIMARALSVGIGIGTPQLIDRINILQATRHAMAEAVDILAPRPDMLLIDGISTI-DVPLP 138

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              + KGDS SL+IAAASIIAKV+RDR++      +P YGF SH GY  A H + I+  G
Sbjct: 139 QKTITKGDSRSLTIAAASIIAKVSRDRMLTELDLLHPGYGFASHKGYGCASHMEAIRRLG 198

Query: 193 PSCIHRLTFRPLRN 206
           PS +HRLTFR +R 
Sbjct: 199 PSPVHRLTFRGVRE 212


>gi|224541328|ref|ZP_03681867.1| hypothetical protein CATMIT_00488 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525765|gb|EEF94870.1| hypothetical protein CATMIT_00488 [Catenibacterium mitsuokai DSM
           15897]
          Length = 211

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/203 (36%), Positives = 121/203 (59%), Gaps = 6/203 (2%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           + ++   + E   R      + G+DE GRG +AGP+VV  +I   +     INDSKK++ 
Sbjct: 1   MNKQERLKYENEARAAGYSRILGVDEAGRGPMAGPLVVGGVIFPEDFYDERINDSKKLTE 60

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KKRE LY+ I  +A+   I   S + +D  N+++A+   +   VE+L+  P   L D   
Sbjct: 61  KKREALYDLIIENALAYQIEVLSVEEVDTLNVYEASRTGMKRIVESLE--PDFTLSDAMP 118

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           + +       ++IKGD+ S+SI AASI+AKVTRDR+M+   K+YP+YGF+ H GY T  H
Sbjct: 119 LGD---IPHLSIIKGDAKSISIGAASILAKVTRDRIMKEYGKQYPEYGFEKHKGYVTKAH 175

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
           ++ +++ G + IHR +F P++ +
Sbjct: 176 KEALEKYGVTPIHRRSFAPVQKV 198


>gi|120555445|ref|YP_959796.1| ribonuclease H [Marinobacter aquaeolei VT8]
 gi|189043693|sp|A1U3P0|RNH2_MARAV RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|120325294|gb|ABM19609.1| RNase HII [Marinobacter aquaeolei VT8]
          Length = 227

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 80/182 (43%), Positives = 110/182 (60%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP     G+ DSKK++ KKR  LY+ I  +A   S+
Sbjct: 17  LLAGVDEVGRGPLIGAVVTAAVILDPARPIPGLADSKKLTEKKRLRLYDDILENAAAWSL 76

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
                  ID+ NI++AT+ A+  AVE L + P   L+DG   P+     +  VIKGDS  
Sbjct: 77  GRCEASEIDELNIYQATMLAMKRAVEGLSIAPEYVLVDGNRCPK-WQWPSEPVIKGDSRV 135

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AKVTRDR M     ++P +G   H GYPT  H + +   G +  HR +FRP
Sbjct: 136 EAISAASILAKVTRDREMEALDVRFPGFGLAQHKGYPTPVHLEALNRLGVTPEHRRSFRP 195

Query: 204 LR 205
           ++
Sbjct: 196 VK 197


>gi|259417130|ref|ZP_05741049.1| ribonuclease HII [Silicibacter sp. TrichCH4B]
 gi|259346036|gb|EEW57850.1| ribonuclease HII [Silicibacter sp. TrichCH4B]
          Length = 208

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 86/200 (43%), Positives = 128/200 (64%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           + P   LE +   +    +AG+DEVGRG LAGPV  AA++LD   +P G+NDSKK++ ++
Sbjct: 5   DTPDLSLEQVALSRGYTRIAGVDEVGRGPLAGPVTAAAVVLDLAALPEGLNDSKKLTPRR 64

Query: 68  REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           R  L  +I + A  +++ AS + ID HNI +A+  A+  AV  L   P   LIDG  IP 
Sbjct: 65  RAALEPEIMARASYAVAHASVEEIDHHNILRASHLAMERAVAALDPQPDYLLIDGNLIPR 124

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           DL   A AV+KGD  SLSIAAASI+AK  RDR+M    +++P YG++ + GYP+ +H++ 
Sbjct: 125 DLRIPAEAVVKGDGRSLSIAAASILAKEARDRIMVDLAQQFPGYGWERNAGYPSKQHREA 184

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           + + G +  HR +F+P+ N+
Sbjct: 185 LIKIGVTPHHRRSFKPVHNI 204


>gi|291524515|emb|CBK90102.1| Ribonuclease HII [Eubacterium rectale DSM 17629]
          Length = 253

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 87/189 (46%), Positives = 118/189 (62%), Gaps = 4/189 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E          + GIDEVGRG LAGPVV  A+IL  +     INDSKK++  KR+ELY+
Sbjct: 63  YEREYAS--YAHICGIDEVGRGPLAGPVVACAVILPKDCDILYINDSKKLTAAKRDELYD 120

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   A+ + I  ASH+ ID+ NI +AT +A+  A+  L  +P   L D  +IP  +  +
Sbjct: 121 VIMEKAVSVGIGMASHERIDEINILQATYEAMRQAIGKLDPVPDLTLNDAVTIP-GVDIK 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              +IKGD+ S+SI AASI+AKVTRDR+M    + YP YGF S+ GY +A+H + +KE G
Sbjct: 180 QVPIIKGDAKSISIGAASIVAKVTRDRMMVEYDRIYPGYGFASNKGYGSAEHIKALKEIG 239

Query: 193 PSCIHRLTF 201
           PS IHR +F
Sbjct: 240 PSPIHRASF 248


>gi|288553081|ref|YP_003425016.1| ribonuclease H [Bacillus pseudofirmus OF4]
 gi|288544241|gb|ADC48124.1| ribonuclease H [Bacillus pseudofirmus OF4]
          Length = 260

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/191 (42%), Positives = 110/191 (57%), Gaps = 3/191 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E    +     VAG+DEVGRG LAGPV  AA+IL  +    G+ DSKK+S +KRE   E+
Sbjct: 63  EREAWQNGYNYVAGLDEVGRGPLAGPVTAAAVILPKDASLPGLTDSKKLSKEKREFFVEE 122

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   A+  S+       ID+ NI++AT  A+  AV NL + P   L+D   +   LP   
Sbjct: 123 IKKQALAYSVVFVDADEIDRVNIYEATKLAMQRAVNNLDIQPDYLLLDAMKLANSLP--Q 180

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            ++IKGD  SL+IAA+S++AKV RD  M    K YP YGF  HVGY T  H + +   G 
Sbjct: 181 ESLIKGDQKSLTIAASSVLAKVARDEYMVELEKVYPGYGFAKHVGYGTEVHLKAMNALGI 240

Query: 194 SCIHRLTFRPL 204
           +  HR +F+P+
Sbjct: 241 TKEHRKSFKPV 251


>gi|312278270|gb|ADQ62927.1| Ribonuclease HII [Streptococcus thermophilus ND03]
          Length = 255

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 82/195 (42%), Positives = 120/195 (61%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +  + +  +AG+DEVGRG LAGPVV AA+IL       G+NDSKKI   K E +Y 
Sbjct: 60  YEKSLCARGIELIAGVDEVGRGPLAGPVVAAAVILPKLCKIKGLNDSKKIPKSKHEAIYN 119

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           ++   A+ + I    +  ID  NI++AT  A+  A+E L   P   LID  ++  DLP +
Sbjct: 120 QVMKEAVAVGIGIKDNYVIDDVNIYEATKLAMIEAIEKLNPQPEHLLIDAMNL--DLPIE 177

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ SLSIAAASI+AKVTRD++M    +++P Y F  + GY T +H   I + G
Sbjct: 178 QTSIIKGDANSLSIAAASIVAKVTRDKMMADYEQEFPGYAFAKNAGYGTKEHLSGIDKFG 237

Query: 193 PSCIHRLTFRPLRNL 207
            + IHR +F P++++
Sbjct: 238 VTPIHRRSFEPIKSI 252


>gi|294012729|ref|YP_003546189.1| ribonuclease HII [Sphingobium japonicum UT26S]
 gi|292676059|dbj|BAI97577.1| ribonuclease HII [Sphingobium japonicum UT26S]
          Length = 199

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 84/202 (41%), Positives = 123/202 (60%), Gaps = 5/202 (2%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
            P F  E ++    +  VAG+DE GRG LAGPVV AA+IL   + P G+NDSK++S  +R
Sbjct: 1   MPDFAHE-LLHHPGL--VAGVDEAGRGPLAGPVVAAAVILRQEDCPEGLNDSKQLSAARR 57

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
             L  +I + A+   +  AS + ID  NI  AT+ A+  AVE L       L+DG   P+
Sbjct: 58  AVLEGEIKARALCWGLGVASVEEIDSINILWATMLAMTRAVEALAHDCAHVLVDGNRCPQ 117

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
                + A+++GD+  LSIAAASI+AK  RDR+M  A   +P YG++S+ GY +A+H   
Sbjct: 118 -WRWASTAIVEGDAKCLSIAAASILAKEARDRMMVEAAATHPHYGWESNKGYGSARHLAA 176

Query: 188 IKEKGPSCIHRLTFRPLRNLSV 209
           ++E GP+ +HR +F P+  LS+
Sbjct: 177 LREHGPTPLHRRSFAPVAQLSL 198


>gi|229829016|ref|ZP_04455085.1| hypothetical protein GCWU000342_01101 [Shuttleworthia satelles DSM
           14600]
 gi|229792179|gb|EEP28293.1| hypothetical protein GCWU000342_01101 [Shuttleworthia satelles DSM
           14600]
          Length = 260

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 86/189 (45%), Positives = 116/189 (61%), Gaps = 3/189 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E     ++   VAG+DEVGRG LAGP+V AA+IL   +   GINDSKK+S KKREELY 
Sbjct: 64  FEREAW-QSCQYVAGMDEVGRGPLAGPLVTAAVILPRGHRILGINDSKKVSAKKREELYR 122

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   A+ + I   S   ID+ N+ +AT +A+  AV  L   P   L D  ++P  L  +
Sbjct: 123 QIMEEALAVGIGMNSPGRIDQINVLQATYEAMREAVSQLDPAPELVLNDAVTVP-GLLVR 181

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              +I GD+ S+SI AASI+AKVTRD +M    K YP YGF  + GY TA H + +++ G
Sbjct: 182 QIPIIHGDARSISIGAASIVAKVTRDHMMEDYDKTYPGYGFAKNKGYGTADHIRALRKMG 241

Query: 193 PSCIHRLTF 201
           P+ IHR +F
Sbjct: 242 PTPIHRRSF 250


>gi|254480314|ref|ZP_05093562.1| ribonuclease HII [marine gamma proteobacterium HTCC2148]
 gi|214039876|gb|EEB80535.1| ribonuclease HII [marine gamma proteobacterium HTCC2148]
          Length = 200

 Score =  253 bits (646), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 86/183 (46%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG LAG VV AA+ILDP+N   G+ DSKK+S  +REEL   I   AI  SI+
Sbjct: 14  IAGVDEVGRGPLAGDVVTAAVILDPSNPVEGLRDSKKLSESRREELAIIIREKAIAWSIA 73

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID+ NI +A+L A+  AVE L   P   L+DG  +P+     +  V+KGD    
Sbjct: 74  RASVAEIDELNILQASLLAMKRAVEALTPQPGYVLVDGNRLPQ-WSYPSEPVVKGDDRVP 132

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AKV RD  +    +KYP YGF +H GYPTA H   ++  G + +HR ++ P+
Sbjct: 133 AIAAASILAKVQRDNELVALEQKYPGYGFAAHKGYPTAAHLHALQSLGVTPVHRRSYAPV 192

Query: 205 RNL 207
           R +
Sbjct: 193 RRI 195


>gi|71279195|ref|YP_268311.1| ribonuclease HII [Colwellia psychrerythraea 34H]
 gi|97182381|sp|Q485F4|RNH2_COLP3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|71144935|gb|AAZ25408.1| ribonuclease HII [Colwellia psychrerythraea 34H]
          Length = 217

 Score =  253 bits (646), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 91/207 (43%), Positives = 116/207 (56%), Gaps = 18/207 (8%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P FE          + +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR 
Sbjct: 8   PDFEYPIA------YCIAGVDEVGRGPLVGDVVTAAVILDPDNPIEGLMDSKKLSEKKRN 61

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-- 126
            L  +I   AI  S+  AS Q ID  NI  AT+ A+  AVE L V P   L+DG   P  
Sbjct: 62  LLSLEIKEKAISWSLGRASPQEIDTLNILHATMLAMQRAVEGLNVEPDFVLVDGNRCPTF 121

Query: 127 ---------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                    ++L   + AV+KGD+    I+AASIIAKV RD  M    K +P+YGF  H 
Sbjct: 122 LCNASESNQQNLKIASQAVVKGDARVTEISAASIIAKVARDNEMIALDKLHPEYGFAKHK 181

Query: 178 GYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           GYPT  H + I E G    +R +F+P+
Sbjct: 182 GYPTKLHLEKIIEHGVLDCYRQSFKPV 208


>gi|78066784|ref|YP_369553.1| ribonuclease HII [Burkholderia sp. 383]
 gi|97182346|sp|Q39F57|RNH2_BURS3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|77967529|gb|ABB08909.1| Ribonuclease H [Burkholderia sp. 383]
          Length = 214

 Score =  253 bits (646), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 90/182 (49%), Positives = 121/182 (66%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKR+ LYE I + ++   +
Sbjct: 27  IVCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLDDSKALSAKKRDALYELIVARSLSYCV 86

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS   ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  +A A++ GD++ 
Sbjct: 87  ASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LTVRAEAIVSGDALV 145

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+++P YGF+ H GY TAKH   ++E GP   HR +F P
Sbjct: 146 PSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAHRRSFAP 205

Query: 204 LR 205
           +R
Sbjct: 206 VR 207


>gi|260662114|ref|ZP_05863010.1| ribonuclease HII [Lactobacillus fermentum 28-3-CHN]
 gi|260553497|gb|EEX26389.1| ribonuclease HII [Lactobacillus fermentum 28-3-CHN]
          Length = 256

 Score =  253 bits (646), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 83/195 (42%), Positives = 119/195 (61%), Gaps = 3/195 (1%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E  + +     VAGIDEVGRG LAGPVV  A++LD      G+ DSK++S  +RE+
Sbjct: 59  RFRYENQLWQAGHQYVAGIDEVGRGPLAGPVVTCAVVLDSQFDLVGVTDSKQLSRHEREQ 118

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY +I   A+ +S++ +  Q ID+ NI+ AT  A+  +V+ L   P   ++D   +P D+
Sbjct: 119 LYLRILDEAVEVSLAVSPAQEIDRLNIYAATQTAMIRSVKALHHQPSHLIVDA--VPLDI 176

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +I+GD  S+S+AAASI+AK  RD LM I  + YP YGF  ++GY TA H   ++
Sbjct: 177 PVPQTTLIRGDQKSISVAAASIVAKEYRDHLMAIYDRLYPGYGFKDNMGYGTAAHLAGLE 236

Query: 190 EKGPSCIHRLTFRPL 204
           + G   IHR TFRP+
Sbjct: 237 QLGACPIHRRTFRPV 251


>gi|302392411|ref|YP_003828231.1| Ribonuclease H [Acetohalobium arabaticum DSM 5501]
 gi|302204488|gb|ADL13166.1| Ribonuclease H [Acetohalobium arabaticum DSM 5501]
          Length = 315

 Score =  253 bits (646), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 80/198 (40%), Positives = 115/198 (58%), Gaps = 2/198 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E  +  +    + G+DE GRG LAGPV  A +IL  +    G+NDSK++S  KREE +
Sbjct: 65  QFEDDLANRGYQLIGGVDEAGRGPLAGPVAAAVVILPEDIWMPGLNDSKQLSEAKREEFF 124

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            K+   A+ I +       ID+ NI  A   A+  A+ NL+  P   L+DG  IPE +  
Sbjct: 125 AKLQEEAVDIGVGLVDSDRIDEVNIRNANYQAMREAISNLEQTPDYLLVDGEEIPE-IGI 183

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   ++ GD  S+SIAAASIIAKVTRDR++    ++YP+Y F  H GY TA H   ++E 
Sbjct: 184 EQRRLVDGDQRSVSIAAASIIAKVTRDRMLVEYDQEYPEYNFVQHKGYGTADHIAALEEH 243

Query: 192 GPSCIHRLTFRPLRNLSV 209
           GP  IHR +F  +R  ++
Sbjct: 244 GPCPIHRYSFSKVREAAL 261


>gi|254420769|ref|ZP_05034493.1| ribonuclease HII [Brevundimonas sp. BAL3]
 gi|196186946|gb|EDX81922.1| ribonuclease HII [Brevundimonas sp. BAL3]
          Length = 213

 Score =  253 bits (646), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 89/199 (44%), Positives = 120/199 (60%), Gaps = 2/199 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P   LE ++ ++   PV G+DE GRG  AGPV  AA+IL+P+++P GI+DSK ++ K+R 
Sbjct: 12  PTLALETVLIQRVNGPVCGVDEAGRGPWAGPVSAAAVILNPDDLPPGIDDSKALTEKRRA 71

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            L  +I + A+   +  AS + I+  NI  AT  A+  AVE L V P +AL+DG      
Sbjct: 72  ALEPEIKARAVAWGVGFASVEEIEDLNILHATGLAMCRAVEQLAVQPAAALVDGN-YRFR 130

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LPC+   V+ GD +SLSIAAASI+AK  RDRLM     +YP YGF  H GY    HQ  +
Sbjct: 131 LPCEIQTVVGGDGLSLSIAAASILAKTARDRLMIDLDAQYPGYGFARHKGYNAPIHQAAL 190

Query: 189 KEKGPSCIHRLTFRPLRNL 207
           K  GP   HR  + P+R L
Sbjct: 191 KTLGPCPAHRRGWSPIRAL 209


>gi|291569313|dbj|BAI91585.1| ribonuclease HII [Arthrospira platensis NIES-39]
          Length = 231

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/201 (40%), Positives = 111/201 (55%), Gaps = 5/201 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHK 66
            ++L     + +   VAGIDEVGRGA  GPVV AA+ L    I      G+ DSKK++  
Sbjct: 7   TYQLPPAFEQLSWTAVAGIDEVGRGAWFGPVVAAAVQLSETTILELAAAGVKDSKKLTPT 66

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
            R  L   I S AI   I  AS + ID+ NI +AT  A+  +V  L   P+  L+DG  +
Sbjct: 67  LRASLSTLIRSKAIACGIGWASAREIDRLNILQATQLAMRRSVLKLDPPPQLCLVDGNRL 126

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
             +L     A++KGDS  + IAA+SI+AKV RD LM    + YP YG   H GY T +H+
Sbjct: 127 IPNLSIPQQAIVKGDSHCIVIAASSILAKVWRDELMTRLDRTYPQYGLAKHKGYGTKQHK 186

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
           Q ++  GP   HR +F P+R 
Sbjct: 187 QALQSYGPCFHHRFSFAPVRQ 207


>gi|91784105|ref|YP_559311.1| ribonuclease HII [Burkholderia xenovorans LB400]
 gi|123358681|sp|Q13XD0|RNH2_BURXL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|91688059|gb|ABE31259.1| RNase HII [Burkholderia xenovorans LB400]
          Length = 248

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 89/184 (48%), Positives = 120/184 (65%), Gaps = 3/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-IS 82
            V G+DE GRG LAGPVV AA+I DP      G++DSK ++ KKR+ELY+KI   A+   
Sbjct: 30  IVCGVDEAGRGPLAGPVVAAAVIFDPAKPMIRGLDDSKVLTAKKRDELYDKIVDRALAYC 89

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+SAS + ID  NI  AT+ A+  AVE L V+P    IDG   P  L  ++ AVI GD++
Sbjct: 90  IASASVEEIDSLNILHATMLAMKRAVEGLSVVPTLVKIDGNRCPT-LSVRSEAVIGGDAL 148

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             SI+AASI+AKVTRDR++   H+ +P YGF++H GY T +H   ++E GP   HR +F 
Sbjct: 149 VKSISAASILAKVTRDRMLLELHQAHPVYGFNAHAGYGTPQHLAALREHGPCEHHRRSFA 208

Query: 203 PLRN 206
           P+R 
Sbjct: 209 PVRE 212


>gi|229824939|ref|ZP_04451008.1| hypothetical protein GCWU000182_00288 [Abiotrophia defectiva ATCC
           49176]
 gi|229790942|gb|EEP27056.1| hypothetical protein GCWU000182_00288 [Abiotrophia defectiva ATCC
           49176]
          Length = 255

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 88/189 (46%), Positives = 111/189 (58%), Gaps = 3/189 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E    E     + GIDEVGRG LAGPVV AA+I   + I   +NDSKK++  KREEL+ 
Sbjct: 62  FERQFCENGY--ICGIDEVGRGPLAGPVVAAAVIFPKDLIIPYVNDSKKLTEAKREELFN 119

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   AI +   S  +  ID+ NI ++T +A+  AV  L V P   L+DG     +L   
Sbjct: 120 HIMCEAISVGFGSVDNSRIDEINILQSTFEAMRKAVSELNVKPDIILVDGDKKIPELDIS 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             A++ GD+ SLSIAAASI+AKV RDR M+    KYP Y F S+ GY + KH   IKE G
Sbjct: 180 QQAIVGGDAKSLSIAAASIVAKVVRDRYMKEMDIKYPMYDFASNKGYGSKKHLTGIKEFG 239

Query: 193 PSCIHRLTF 201
            S IHR TF
Sbjct: 240 ISPIHRKTF 248


>gi|77360940|ref|YP_340515.1| RNAse HII [Pseudoalteromonas haloplanktis TAC125]
 gi|97189191|sp|Q3IIW9|RNH2_PSEHT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|76875851|emb|CAI87072.1| RNAse HII [Pseudoalteromonas haloplanktis TAC125]
          Length = 200

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/192 (42%), Positives = 115/192 (59%), Gaps = 2/192 (1%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76
            +   N+  +AG+DEVGRG L G VV AA+ILDP+    G+ DSKK++ KKR+ L  +I 
Sbjct: 2   QIERPNVALIAGVDEVGRGPLVGDVVTAAVILDPSKPIAGLADSKKLTDKKRQALAIEIQ 61

Query: 77  SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135
             A+  +    S   ID+ NI  AT+ A+  AVE L   P    IDG  +P+ L   A A
Sbjct: 62  EKALCYAYGRCSPTEIDELNILHATMLAMTRAVEGLSTQPEFVFIDGNRLPK-LTMPAQA 120

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           ++KGDS+   I+AASI+AKV RD  M    K++P+YGF  H GYPT  H   +++ G   
Sbjct: 121 IVKGDSLVAEISAASILAKVARDNEMVELDKRHPEYGFAGHKGYPTKAHFAALEQYGAIK 180

Query: 196 IHRLTFRPLRNL 207
            HR +F+P++ +
Sbjct: 181 EHRKSFKPVQRV 192


>gi|27377632|ref|NP_769161.1| ribonuclease HII [Bradyrhizobium japonicum USDA 110]
 gi|39932385|sp|Q89S84|RNH2_BRAJA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|27350777|dbj|BAC47786.1| ribonuclease HII [Bradyrhizobium japonicum USDA 110]
          Length = 261

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 95/201 (47%), Positives = 129/201 (64%), Gaps = 1/201 (0%)

Query: 4   NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
            + P +  F  E  + ++ +WPVAG DE GRG LAGPVV AA+ILDP+ IP GI+DSK++
Sbjct: 22  EAAPVKASFRRERALIKRGIWPVAGCDEAGRGPLAGPVVAAAVILDPDRIPRGIDDSKRL 81

Query: 64  SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
           + ++RE+L++KI ++A +S++ AS   ID+ NI +A+L A+  AV  L   PR   +DGR
Sbjct: 82  TAEQREKLFDKICATAQVSVAVASPARIDRDNILRASLWALKRAVVALPEAPRHVFVDGR 141

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
               D  C   AVI GD I LSIAAASI+AKVTRDRLM    +  P YGF+ H GY   +
Sbjct: 142 D-RLDTACDCEAVIGGDGIVLSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYGVPE 200

Query: 184 HQQVIKEKGPSCIHRLTFRPL 204
           H   +   GP+  HR  F P+
Sbjct: 201 HLDALNRLGPTVHHRSFFAPV 221


>gi|194467936|ref|ZP_03073922.1| Ribonuclease H [Lactobacillus reuteri 100-23]
 gi|194452789|gb|EDX41687.1| Ribonuclease H [Lactobacillus reuteri 100-23]
          Length = 256

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/195 (41%), Positives = 116/195 (59%), Gaps = 3/195 (1%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F+ E    EK    VAG+DEVGRG LAGPVV  A+IL+ +    G+ DSK+++  +RE 
Sbjct: 59  RFKYEKYYWEKGCQYVAGMDEVGRGPLAGPVVTCAVILNADFDLIGVTDSKQLTRHEREN 118

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY +I   A+ +SI+      ID+ NI+ AT DA+  AV +L   P   ++D   +P  +
Sbjct: 119 LYLRIVDEAVEVSIAVNDAPVIDQMNIYAATQDAMIRAVNHLHHRPDHLIVDA--VPLAI 176

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                 +IKGD  S+S+AAASI+AK  RD LMR     YP YGF  ++GY T +H   ++
Sbjct: 177 DIPQTTLIKGDQKSISVAAASIVAKEYRDHLMRDYDYVYPGYGFAQNMGYGTKEHLVGLE 236

Query: 190 EKGPSCIHRLTFRPL 204
           + G + IHR +F P+
Sbjct: 237 KMGATPIHRRSFNPV 251


>gi|295676811|ref|YP_003605335.1| Ribonuclease H [Burkholderia sp. CCGE1002]
 gi|295436654|gb|ADG15824.1| Ribonuclease H [Burkholderia sp. CCGE1002]
          Length = 249

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 88/184 (47%), Positives = 117/184 (63%), Gaps = 3/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-IS 82
            V G+DE GRG LAGPVV AA+I DP      G++DSK ++  KRE LY+KI   A+   
Sbjct: 31  IVCGVDEAGRGPLAGPVVAAAVIFDPTRPMIRGLDDSKALTALKREALYDKIVDRALAYC 90

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           ++SA+ + ID  NI  AT+ A+  AVE L V+P    IDG   P  L  ++ AVI GD++
Sbjct: 91  VASATVEEIDSLNILHATMLAMKRAVEGLSVVPTLVKIDGNRCPT-LSIRSEAVIGGDAL 149

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             SI+AASI+AKVTRDR++   H  YP YGFD+H GY T +H   ++E GP   HR +F 
Sbjct: 150 VKSISAASILAKVTRDRMLVELHHAYPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFA 209

Query: 203 PLRN 206
           P+R 
Sbjct: 210 PVRE 213


>gi|254672745|emb|CBA06746.1| Ribonuclease HII [Neisseria meningitidis alpha275]
 gi|325203313|gb|ADY98766.1| ribonuclease HII [Neisseria meningitidis M01-240355]
          Length = 194

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/182 (45%), Positives = 109/182 (59%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG L G V  AA+IL       G+ DSKK+S KKR+ L E I + A+   +++
Sbjct: 6   AGVDEAGRGPLVGSVFAAAVILPEIFDLPGLTDSKKLSEKKRDALAEMIKNQAVAWHVAA 65

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           AS + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  + 
Sbjct: 66  ASPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P+R
Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185

Query: 206 NL 207
           NL
Sbjct: 186 NL 187


>gi|288941772|ref|YP_003444012.1| Ribonuclease H [Allochromatium vinosum DSM 180]
 gi|288897144|gb|ADC62980.1| Ribonuclease H [Allochromatium vinosum DSM 180]
          Length = 206

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 89/183 (48%), Positives = 112/183 (61%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DE GRG LAGPV  AA+ILDP     GI DSKK+S  +RE L   I   A+  S+
Sbjct: 12  LIAGVDEAGRGPLAGPVCAAAVILDPARPIAGIGDSKKLSPARRERLEPLIRDQALAWSV 71

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + AS + ID+ NI +ATL A+  AVE+LQ+ P  ALIDG   P+ L   A A++ GD   
Sbjct: 72  AWASAEEIDRLNILQATLLAMRRAVESLQIRPVKALIDGNRCPQ-LDIAAEAIVGGDGSV 130

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I AASI+AKV RDR M     + P YGF  H GYPT +H   I+  GP   HRL+F P
Sbjct: 131 PAIGAASILAKVARDRFMLELDAECPGYGFAKHKGYPTREHLNAIERLGPCRWHRLSFAP 190

Query: 204 LRN 206
           L  
Sbjct: 191 LSK 193


>gi|238923885|ref|YP_002937401.1| ribonuclease H [Eubacterium rectale ATCC 33656]
 gi|238875560|gb|ACR75267.1| ribonuclease H [Eubacterium rectale ATCC 33656]
          Length = 253

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 86/189 (45%), Positives = 116/189 (61%), Gaps = 4/189 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E          + GIDEVGRG LAGPVV  A+IL  +     INDSKK++  KR+ELY+
Sbjct: 63  YEREYAS--YAHICGIDEVGRGPLAGPVVACAVILPKDCDILYINDSKKLTAAKRDELYD 120

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   A+ + I  ASH+ ID+ NI +AT +A+  A+  L   P   L D  +IP  +  +
Sbjct: 121 VIMEKAVSVGIGMASHERIDEINILQATYEAMRQAIGKLDPAPDLTLNDAVTIP-GVDIK 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              +IKGD+ S+SI AASI+AKVTRDR+M      YP YGF S+ GY +A+H + +K+ G
Sbjct: 180 QVPIIKGDAKSISIGAASIVAKVTRDRMMVEYDNIYPGYGFASNKGYGSAEHIKALKKIG 239

Query: 193 PSCIHRLTF 201
           PS IHR +F
Sbjct: 240 PSPIHRASF 248


>gi|303258069|ref|ZP_07344077.1| ribonuclease HII [Burkholderiales bacterium 1_1_47]
 gi|330998718|ref|ZP_08322447.1| ribonuclease HII [Parasutterella excrementihominis YIT 11859]
 gi|302859088|gb|EFL82171.1| ribonuclease HII [Burkholderiales bacterium 1_1_47]
 gi|329576457|gb|EGG57969.1| ribonuclease HII [Parasutterella excrementihominis YIT 11859]
          Length = 213

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 83/181 (45%), Positives = 119/181 (65%), Gaps = 2/181 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            V G+DE GRG LAGPVV AA+IL+P++   G+ DSKK++   RE L E+I + A+  +I
Sbjct: 15  LVCGVDEAGRGPLAGPVVAAAVILNPDHPIEGLRDSKKLTAHAREVLAEQIKTHALAWAI 74

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + +S   ID+ NI +AT+ A+  AV  L   P   L+DG  +PE LP +A  ++KGD + 
Sbjct: 75  AESSVADIDRMNILQATMAAMRKAVLQLDPKPDLVLVDGNRLPE-LPFRAEPIVKGDDLI 133

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AK  RD LM+I    YP YGF+ H GY TA H +++++ GP  +HR+TF P
Sbjct: 134 PEISAASILAKTYRDALMKILGGMYPKYGFEQHAGYGTAHHLKMLEKWGPCPVHRMTFGP 193

Query: 204 L 204
           +
Sbjct: 194 V 194


>gi|58584899|ref|YP_198472.1| ribonuclease HII [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|73917838|sp|Q5GRZ4|RNH2_WOLTR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|58419215|gb|AAW71230.1| Ribonuclease HII [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 203

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 86/198 (43%), Positives = 121/198 (61%), Gaps = 6/198 (3%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKR 68
           P F LE  +       +AG+DEVGRG LAGPV+ AA++  + N I  GINDSKK++ K R
Sbjct: 4   PDFTLENKLS----GVIAGVDEVGRGPLAGPVMSAAVVFTNRNIIIEGINDSKKLTAKNR 59

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           + LYEKI S A   I  AS   I+ +NI +AT  ++  A+ NL +     L+DG   P  
Sbjct: 60  QVLYEKIISVAKFGIGMASVAEINSYNILQATKLSMERALVNLGIELDYVLVDGNQ-PPK 118

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           +  Q  +++KGDS+S+S+AAASI+AKV RD+LM+  H +YP+Y +  + GY T  H   I
Sbjct: 119 VKWQVKSIVKGDSLSVSVAAASIVAKVARDQLMQELHNQYPEYNWYKNKGYGTKGHIDAI 178

Query: 189 KEKGPSCIHRLTFRPLRN 206
              G +  HR +F P+ N
Sbjct: 179 NLYGVTEHHRKSFAPILN 196


>gi|331091010|ref|ZP_08339852.1| hypothetical protein HMPREF9477_00495 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405232|gb|EGG84768.1| hypothetical protein HMPREF9477_00495 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 252

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 96/203 (47%), Positives = 126/203 (62%), Gaps = 8/203 (3%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           I E   +E E  + E     + GIDEVGRG LAGPVV  A+IL  + +   +NDSKK+S 
Sbjct: 56  IEEMSRYEQENCMEE----YICGIDEVGRGPLAGPVVAGAVILPKDEMILYLNDSKKLSE 111

Query: 66  KKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KKREELY+ I   A+   I   S   ID+ NI +AT +A+  A++NL+V P   L D  +
Sbjct: 112 KKREELYDIIMERAVAAGIGIVSPARIDEINILQATYEAMRMAIDNLKVQPTLLLNDAVT 171

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           IP  +  +   +IKGD+ S+SIAAASIIAKVTRDRLM+   K  P Y F S+ GY +A H
Sbjct: 172 IP-SVNIRQIPIIKGDAKSVSIAAASIIAKVTRDRLMKEYDKVIPGYDFASNKGYGSAAH 230

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
            Q +KE G + IHR TF  ++N 
Sbjct: 231 IQALKENGATLIHRKTF--IKNF 251


>gi|297620937|ref|YP_003709074.1| Ribonuclease HII [Waddlia chondrophila WSU 86-1044]
 gi|297376238|gb|ADI38068.1| Ribonuclease HII [Waddlia chondrophila WSU 86-1044]
          Length = 254

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/196 (42%), Positives = 112/196 (57%), Gaps = 3/196 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E   R       AGIDE GRG LAGPVV +A IL       G+NDSKK++  +R+  +E
Sbjct: 59  YENEARRMGYSHPAGIDEAGRGPLAGPVVASACILPAGYHLSGLNDSKKLTPLQRKRFFE 118

Query: 74  KITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +T   +  I I  A+H+ ID  N+ +AT  A+  AV+ L+  P   LID   + E  P 
Sbjct: 119 VLTQDPNVCIGIGIATHEEIDTVNVLEATKLAMCKAVDMLKPQPDFLLIDAVKLSEQ-PI 177

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +IKGD    +IAAAS+IAK TRDR+M     K+P YGF  H GY T  H++ IK  
Sbjct: 178 PFLNLIKGDCRVQAIAAASVIAKETRDRIMDEYDVKWPMYGFGRHKGYGTEAHREAIKRH 237

Query: 192 GPSCIHRLTFRPLRNL 207
           GP  IHR TF P++++
Sbjct: 238 GPCPIHRKTFEPIKSM 253


>gi|154503287|ref|ZP_02040347.1| hypothetical protein RUMGNA_01111 [Ruminococcus gnavus ATCC 29149]
 gi|153795954|gb|EDN78374.1| hypothetical protein RUMGNA_01111 [Ruminococcus gnavus ATCC 29149]
          Length = 250

 Score =  252 bits (644), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 88/184 (47%), Positives = 117/184 (63%), Gaps = 4/184 (2%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            + GIDEVGRG LAGPVV AA+IL  +     +NDSKK+S K+REELY++I   AI I I
Sbjct: 69  YICGIDEVGRGPLAGPVVAAAVILPKDAEILYLNDSKKLSAKRREELYDEIQEKAIAIGI 128

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID+ NI +AT +A+  A+  L V P   L D  +IPE +      +IKGD+ S
Sbjct: 129 GMAGPARIDEINILQATYEAMRQAIGQLSVEPEVLLNDAVTIPEVV-IPQVPIIKGDAKS 187

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           +SIAAAS+IAKVTRDRLM    +    YGF  + GY +A+H   +++ GP+ IHR TF  
Sbjct: 188 VSIAAASVIAKVTRDRLMEEYDQVLAGYGFADNKGYGSAEHIAALRKLGPTPIHRRTF-- 245

Query: 204 LRNL 207
           ++N 
Sbjct: 246 IKNF 249


>gi|109897588|ref|YP_660843.1| ribonuclease H [Pseudoalteromonas atlantica T6c]
 gi|123171510|sp|Q15WE9|RNH2_PSEA6 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|109699869|gb|ABG39789.1| RNase HII [Pseudoalteromonas atlantica T6c]
          Length = 197

 Score =  252 bits (644), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/183 (45%), Positives = 114/183 (62%), Gaps = 2/183 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             +AG+DEVGRG L G VV AA+ILDP     G+ DSKKIS KKR  L++ I  +A+ + 
Sbjct: 3   QLIAGVDEVGRGPLVGDVVTAAVILDPAKPIAGLADSKKISEKKRLALFDIIMQNALAVC 62

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  AS Q ID+ NI  AT+ A+  AV+ L   P    +DG   P +    + AV+KGDS+
Sbjct: 63  VGRASPQEIDELNILHATMLAMKRAVQGLATQPTFVRVDGNRCP-NWDYASEAVVKGDSL 121

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASIIAKVTRD  M   H  +P+YGF  H GYPT  H + + E GP   +R++F+
Sbjct: 122 FAEISAASIIAKVTRDAEMSELHNAHPEYGFAQHKGYPTKAHLEKLAELGPLSQYRMSFK 181

Query: 203 PLR 205
           P++
Sbjct: 182 PVQ 184


>gi|222153077|ref|YP_002562254.1| ribonuclease HII [Streptococcus uberis 0140J]
 gi|254807991|sp|B9DS69|RNH2_STRU0 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|222113890|emb|CAR42059.1| ribonuclease HII [Streptococcus uberis 0140J]
          Length = 257

 Score =  252 bits (644), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/211 (38%), Positives = 121/211 (57%), Gaps = 6/211 (2%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           M    +        E ++ ++    +AGIDEVGRG LAGPVV A +IL  +    G+NDS
Sbjct: 48  MVDEELRLDKMLSYEKVLYQEGFSLIAGIDEVGRGPLAGPVVAACVILPIDCKIKGLNDS 107

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPR 116
           KKI   K   +++ I   A+ I I    +  ID  NI++AT  A+  A++N++     P 
Sbjct: 108 KKIPKSKHLSIFQAIQERALGIGIGIVDNHVIDDINIYQATKVAMIEAIKNIKGDVTEPD 167

Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
             LID  ++  + P    ++IKGD+ S+SIAAASI+AKVTRDRLM    K +P Y F  +
Sbjct: 168 YLLIDAMTL--ETPIPQQSIIKGDANSMSIAAASIVAKVTRDRLMMDYEKAFPGYDFAKN 225

Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
            GY T  H   +K+ G + IHR +F P++++
Sbjct: 226 AGYGTTSHLNGLKQFGVTPIHRTSFEPIKSM 256


>gi|218767115|ref|YP_002341627.1| ribonuclease HII [Neisseria meningitidis Z2491]
 gi|11387099|sp|Q9JX40|RNH2_NEIMA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|121051123|emb|CAM07394.1| ribonuclease HII [Neisseria meningitidis Z2491]
 gi|319411322|emb|CBY91733.1| ribonuclease HII (RNase HII) [Neisseria meningitidis WUE 2594]
          Length = 194

 Score =  252 bits (644), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/182 (43%), Positives = 108/182 (59%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG L G V  AA+IL       G+ DSKK+S KKR+ L E I + A+   +++
Sbjct: 6   AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKNQAVAWHVAA 65

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A  + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  + 
Sbjct: 66  AGPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AAS++AK  RD  M    +++P YGFD H GY T +H + +++ G    HR  F P+R
Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALEKYGVLPEHRRDFAPVR 185

Query: 206 NL 207
           NL
Sbjct: 186 NL 187


>gi|238784894|ref|ZP_04628894.1| Ribonuclease HII [Yersinia bercovieri ATCC 43970]
 gi|238714211|gb|EEQ06223.1| Ribonuclease HII [Yersinia bercovieri ATCC 43970]
          Length = 183

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 83/180 (46%), Positives = 112/180 (62%), Gaps = 2/180 (1%)

Query: 29  IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSAS 87
           +DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++IT  A+  S+  A 
Sbjct: 1   MDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEITDKALSWSLGRAE 60

Query: 88  HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147
            + ID+ NI  AT+ A+  AV  L + P   LIDG   P+ L   + AV+KGDS    I+
Sbjct: 61  PEEIDRLNILHATMLAMQRAVAGLHITPDYVLIDGNRCPK-LAMPSLAVVKGDSRVAEIS 119

Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           AASI+AKVTRDR M    + +P+YGF  H GYPTA H + +   G +  HR +F P++ +
Sbjct: 120 AASILAKVTRDREMTELDRHFPEYGFAQHKGYPTAVHLEKLSAFGATEHHRRSFGPVKRV 179


>gi|284051073|ref|ZP_06381283.1| ribonuclease HII [Arthrospira platensis str. Paraca]
          Length = 223

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 82/201 (40%), Positives = 111/201 (55%), Gaps = 5/201 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHK 66
            ++L     + +   VAGIDEVGRGA  GPVV AA+ L    I      G+ DSKK++  
Sbjct: 7   TYQLPPAFEQLSWTAVAGIDEVGRGAWFGPVVAAAVQLSETTILELAAAGVKDSKKLTPT 66

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
            R  L   I S AI   I  AS + ID+ NI +AT  A+  +V  L   P+  L+DG  +
Sbjct: 67  LRASLSTLIRSKAIACGIGWASAREIDRLNILQATQLAMRRSVLKLDPPPQLCLVDGNRL 126

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
             +L     A++KGDS  + IAA+SI+AKV RD LM    + YP YG   H GY T +H+
Sbjct: 127 IPNLSIPQQAIVKGDSHCIVIAASSILAKVWRDELMTRLDRTYPQYGLAKHKGYGTKQHK 186

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
           Q ++  GP   HR +F P+R 
Sbjct: 187 QALQSYGPCFHHRFSFAPVRQ 207


>gi|308274702|emb|CBX31301.1| Ribonuclease HII [uncultured Desulfobacterium sp.]
          Length = 214

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 85/197 (43%), Positives = 118/197 (59%), Gaps = 2/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +  E    EK    +AG+DE GRG +AGPVV AA+IL  +    G+ DSKK++ KKR+ L
Sbjct: 6   WAYELSAFEKGYNKIAGVDEAGRGPIAGPVVSAAVILPFSYPIEGVTDSKKLTPKKRDYL 65

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y  I   A+ I I       I++ NI +A+L ++  AV+NL       LIDG   P    
Sbjct: 66  YNIIYERAVSIGIGIVDPAEIERINILRASLLSMSIAVQNLSPESDYLLIDGI-FPIPHT 124

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +  GDS+SLS+AAASI+AKVTRDRLM   H +YP+YGF  H GYPT +H++ I+ 
Sbjct: 125 LSQQPIPHGDSLSLSVAAASIVAKVTRDRLMERYHYEYPEYGFIKHKGYPTKEHKEAIRR 184

Query: 191 KGPSCIHRLTFRPLRNL 207
            G   IHR +F+ ++ +
Sbjct: 185 SGCCPIHRRSFKGVKEV 201


>gi|225374458|ref|ZP_03751679.1| hypothetical protein ROSEINA2194_00073 [Roseburia inulinivorans DSM
           16841]
 gi|225213696|gb|EEG96050.1| hypothetical protein ROSEINA2194_00073 [Roseburia inulinivorans DSM
           16841]
          Length = 253

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 91/195 (46%), Positives = 121/195 (62%), Gaps = 6/195 (3%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E    +     + GIDEVGRG LAGPVV  A+IL  +     INDSKK+S  KREELY+
Sbjct: 63  YEREYADYGY--ICGIDEVGRGPLAGPVVAGAVILPKDCDILYINDSKKLSAAKREELYD 120

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   A+ + I  AS Q ID+ NI +AT +A+  A+  L V P   L D  +IP  +  +
Sbjct: 121 VIMEKAVAVGIGMASSQRIDEINILQATYEAMREAISKLSVKPDILLNDAVTIP-GVSIR 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              +IKGD+ S+SI AASI+AKVTRDRLM    K  P YGF S+ GY +A+H + ++E G
Sbjct: 180 QVPIIKGDAKSISIGAASIVAKVTRDRLMVEYDKILPQYGFASNKGYGSAEHIRALQEAG 239

Query: 193 PSCIHRLTFRPLRNL 207
           PS IHR++F  ++N 
Sbjct: 240 PSPIHRVSF--IKNF 252


>gi|261391728|emb|CAX49177.1| ribonuclease HII (RNase HII) [Neisseria meningitidis 8013]
          Length = 194

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 82/182 (45%), Positives = 108/182 (59%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG L G V  AA+IL       G+ DSKK+S KKR+ L E I + A    +S+
Sbjct: 6   AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDTLAEMIKNQAAAWHVSA 65

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A+ + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  + 
Sbjct: 66  ATPEEIASLNILHATMLAMKRAVDGLVVHPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P+R
Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185

Query: 206 NL 207
           NL
Sbjct: 186 NL 187


>gi|120610517|ref|YP_970195.1| ribonuclease HII [Acidovorax citrulli AAC00-1]
 gi|189043527|sp|A1TN83|RNH2_ACIAC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|120588981|gb|ABM32421.1| RNase HII [Acidovorax citrulli AAC00-1]
          Length = 240

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 81/182 (44%), Positives = 116/182 (63%), Gaps = 2/182 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82
             VAG+DE GRG LAGPVV AA+ILD      G+ DSK ++  +RE L+++I + A+  S
Sbjct: 21  GLVAGVDEAGRGPLAGPVVAAAVILDELQPIEGLADSKTLTAARREALFDEIRAKALCCS 80

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           ++ A+ + ID  NI +AT+ A+  AV  L++ P   L+DG  +P  L   A A++KGD++
Sbjct: 81  VAEATVEEIDTLNILQATMLAMRRAVAGLRLKPVRVLVDGNRLPP-LDVPAEAIVKGDAL 139

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +I+AASI+AKVTRDR     H+ YP YGF SH GY TA+H   ++  G    HR +F 
Sbjct: 140 VQAISAASILAKVTRDRWCAQLHEAYPHYGFASHKGYGTAEHMAALQAHGACPEHRRSFA 199

Query: 203 PL 204
           P+
Sbjct: 200 PV 201


>gi|86605527|ref|YP_474290.1| ribonuclease HII [Synechococcus sp. JA-3-3Ab]
 gi|97189384|sp|Q2JW45|RNH2_SYNJA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|86554069|gb|ABC99027.1| ribonuclease HII [Synechococcus sp. JA-3-3Ab]
          Length = 221

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 88/204 (43%), Positives = 127/204 (62%), Gaps = 6/204 (2%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF---GINDSKKISH 65
           +P  + E  + ++ M  VAG+DEVGRGALAGPVV AA+IL  +  P    G+ D K++  
Sbjct: 14  QPSLKWEGSLWQQGMRRVAGVDEVGRGALAGPVVAAAVILPAHLDPEALSGVRDCKQLRP 73

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
            +R    E+I   A+ + I SAS   ID+ NI +ATL A+  A+  +  +    L+DG  
Sbjct: 74  PQRAHWAERIAQVALAVGIGSASAAEIDQLNIRQATLLAMQRALAQVGEV-EHILLDGLP 132

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           + E L  +  A++KGD +SLSIAAASI+AKV RD LM+    +YP YG+ ++VGY T +H
Sbjct: 133 LAE-LGSRQTALVKGDQLSLSIAAASIVAKVWRDTLMQSWDHQYPGYGWRTNVGYGTQEH 191

Query: 185 QQVIKEKGPSCIHRLTFRPLRNLS 208
           +  ++  GPS  HR +F PLR+L 
Sbjct: 192 RLALQRLGPSPQHRRSFAPLRDLQ 215


>gi|42520908|ref|NP_966823.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|99034585|ref|ZP_01314549.1| hypothetical protein Wendoof_01000635 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|73917837|sp|Q73G60|RNH2_WOLPM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|42410649|gb|AAS14757.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 198

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 87/198 (43%), Positives = 122/198 (61%), Gaps = 6/198 (3%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKR 68
           P F LE  +       +AG+DEVGRG LAGPV+ AA++  D N I  GINDSKK++ + R
Sbjct: 4   PDFTLENKLS----GVIAGVDEVGRGPLAGPVISAAVVFIDRNTIIDGINDSKKLTPQCR 59

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           + LYEKITS A   I  AS + I+ +NI +AT  ++  A+ +L +     L+DG   PE 
Sbjct: 60  QVLYEKITSVAKFGIGMASVEEINSYNILQATKLSMKRALIDLDLELDYVLVDGNQPPE- 118

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           +  Q  +++ GD++S SIAAASI+AKVTRDRLM+  H K+P+Y +  + GY T +H   I
Sbjct: 119 VKWQVKSIVNGDNLSTSIAAASIVAKVTRDRLMQELHNKHPEYNWYKNKGYGTKEHLNAI 178

Query: 189 KEKGPSCIHRLTFRPLRN 206
              G +  HR  F P+  
Sbjct: 179 GLYGITEHHRKNFAPISR 196


>gi|56416548|ref|YP_153622.1| ribonuclease HII [Anaplasma marginale str. St. Maries]
 gi|56387780|gb|AAV86367.1| ribonuclease HII [Anaplasma marginale str. St. Maries]
          Length = 339

 Score =  251 bits (643), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 91/205 (44%), Positives = 125/205 (60%), Gaps = 2/205 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKI 63
           +   P F +E  +R   +  + G+DEVG GA+AGPVV AA+ L     +    I DSK +
Sbjct: 101 MNRMPSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKAL 160

Query: 64  SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
           S KKREEL+ KIT+ A   +  A  + I++HNI  A+  ++  A++NL V     L+DG 
Sbjct: 161 SSKKREELFCKITAHAKYGVGFARVREIEQHNILVASHISMKRALQNLGVKADLVLVDGS 220

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
             P  LP     ++KGDSIS SIAAASIIAKVTRDR MR  H++YP+Y ++ + GY T  
Sbjct: 221 RAPAGLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKA 280

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLS 208
           H Q +K  G +  HR TF P++ LS
Sbjct: 281 HMQSLKLYGKTAQHRSTFAPVKQLS 305


>gi|86142121|ref|ZP_01060645.1| ribonuclease HII [Leeuwenhoekiella blandensis MED217]
 gi|85831684|gb|EAQ50140.1| ribonuclease HII [Leeuwenhoekiella blandensis MED217]
          Length = 200

 Score =  251 bits (643), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 77/187 (41%), Positives = 108/187 (57%), Gaps = 1/187 (0%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78
             +N+    GIDE GRG LAGPV  AA+IL  +     + DSK ++HK RE L   I   
Sbjct: 6   YSQNILTECGIDEAGRGCLAGPVTAAAVILPQSFKNKILTDSKLLTHKSRELLRPVIEQE 65

Query: 79  AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137
           A+   I+    + ID+ NI  A++ A++ A+E L+  P+  L+DG        C    +I
Sbjct: 66  ALAFGIAHVFPEEIDEINILNASIKAMHLAIEKLKQQPQHILVDGNRFKPYKECSHECII 125

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGDS  LSIAAAS++AK  RDR M   H ++P Y +  + GYPT +H+Q IKE G +  H
Sbjct: 126 KGDSKFLSIAAASVLAKTERDRYMTDLHMQFPHYNWKKNKGYPTKEHRQAIKEFGITSHH 185

Query: 198 RLTFRPL 204
           R +F+ L
Sbjct: 186 RKSFKQL 192


>gi|325143205|gb|EGC65545.1| ribonuclease HII [Neisseria meningitidis 961-5945]
 gi|325197479|gb|ADY92935.1| ribonuclease HII [Neisseria meningitidis G2136]
          Length = 194

 Score =  251 bits (643), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 81/182 (44%), Positives = 108/182 (59%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG L G V  AA+IL       G+ DSKK+S KKR+ L E I + A+   +++
Sbjct: 6   AGVDEAGRGPLVGSVFAAAVILPEIFDLPGLTDSKKLSEKKRDALAEMIKNQAVAWHVAA 65

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A  + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  + 
Sbjct: 66  AGPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P+R
Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185

Query: 206 NL 207
           NL
Sbjct: 186 NL 187


>gi|169335925|ref|ZP_02863118.1| hypothetical protein ANASTE_02360 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258663|gb|EDS72629.1| hypothetical protein ANASTE_02360 [Anaerofustis stercorihominis DSM
           17244]
          Length = 379

 Score =  251 bits (643), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 87/190 (45%), Positives = 115/190 (60%), Gaps = 3/190 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  + ++    +AGIDEVGRG LAGPVV AA++L   +    INDSKK+S +KREEL 
Sbjct: 65  AFENSLHDEGYKYIAGIDEVGRGPLAGPVVTAAVMLPKESNILYINDSKKLSSQKREELA 124

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           EKI   AI  +I    +  IDK NI  AT +A+  AV+NL++ P   LID   +  D+  
Sbjct: 125 EKIKEEAISYAIGIKDNGIIDKINILNATKEAMLEAVDNLKIKPEILLIDAVHLNTDI-- 182

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +  + +KGD    SI AASI+AKV RD+LM    K YP+YGF+ + GY T  H + IK  
Sbjct: 183 KQESFVKGDENIYSIGAASILAKVYRDKLMEDYAKDYPEYGFEKNKGYGTFDHIEAIKNN 242

Query: 192 GPSCIHRLTF 201
           G   IHR +F
Sbjct: 243 GLCPIHRSSF 252


>gi|291527941|emb|CBK93527.1| Ribonuclease HII [Eubacterium rectale M104/1]
          Length = 253

 Score =  251 bits (643), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 87/189 (46%), Positives = 118/189 (62%), Gaps = 4/189 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E          + GIDEVGRG LAGPVV  A+IL  +     INDSKK++  KR+ELY+
Sbjct: 63  YEREYAS--YAHICGIDEVGRGPLAGPVVACAVILPKDCDILYINDSKKLTAAKRDELYD 120

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   A+ + I  ASH+ ID+ NI +AT +A+  A++ L   P   L D  +IP  +  +
Sbjct: 121 VIMEKAVSVGIGMASHERIDEINILQATYEAMRQAIKKLDPAPDLTLNDAVTIP-GVDIK 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              +IKGD+ S+SI AASI+AKVTRDR+M    + YP YGF S+ GY +A+H + +KE G
Sbjct: 180 QVPIIKGDAKSISIGAASIVAKVTRDRMMVEYDRIYPGYGFASNKGYGSAEHIKALKEIG 239

Query: 193 PSCIHRLTF 201
           PS IHR +F
Sbjct: 240 PSQIHRASF 248


>gi|253578396|ref|ZP_04855668.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850714|gb|EES78672.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 251

 Score =  251 bits (643), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 86/182 (47%), Positives = 121/182 (66%), Gaps = 2/182 (1%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +++  + GIDEVGRG LAGPVV  A+IL  ++    +NDSKK+S  KREELY+ I   A+
Sbjct: 66  EHLGYLCGIDEVGRGPLAGPVVACAVILPQDSRILYLNDSKKLSASKREELYDVIMREAV 125

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
            + I   S + ID+ NI +AT +A+  AV  L+V+P+  L D  +IP+ +      +IKG
Sbjct: 126 SVGIGMRSPERIDEINILQATYEAMREAVSKLEVVPQLLLNDAVTIPQ-ITIPQVPIIKG 184

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D+ S+SIAAASI+AKVTRDR+M    K +P+YGF S+ GY +A H   +K+ G + IHR 
Sbjct: 185 DAKSVSIAAASIVAKVTRDRMMEEYDKVFPEYGFASNKGYGSADHIAALKKYGETPIHRK 244

Query: 200 TF 201
           TF
Sbjct: 245 TF 246


>gi|172060953|ref|YP_001808605.1| ribonuclease HII [Burkholderia ambifaria MC40-6]
 gi|238689161|sp|B1YS60|RNH2_BURA4 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|171993470|gb|ACB64389.1| Ribonuclease H [Burkholderia ambifaria MC40-6]
          Length = 217

 Score =  251 bits (643), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 89/183 (48%), Positives = 121/183 (66%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83
            V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKR+ LY+ I + A    +
Sbjct: 27  IVCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKALSAKKRDALYDLIVARASAFCV 86

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS   ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  +A A++ GD++ 
Sbjct: 87  ASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LTVRAEAIVSGDALV 145

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+++P YGF+ HVGY T +H   ++E GP  +HR +F P
Sbjct: 146 PSISAASILAKVTRDRMLVDLHERFPVYGFNVHVGYSTPQHLAALREHGPCEVHRRSFAP 205

Query: 204 LRN 206
           +R 
Sbjct: 206 VRE 208


>gi|293398148|ref|ZP_06642353.1| ribonuclease HII [Neisseria gonorrhoeae F62]
 gi|291611411|gb|EFF40481.1| ribonuclease HII [Neisseria gonorrhoeae F62]
          Length = 212

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 82/205 (40%), Positives = 112/205 (54%), Gaps = 3/205 (1%)

Query: 6   IPERPHFELEAMVREKNMWPV--AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           +P    F     +   N+  +  AG+DE GRG L G V  AA+IL       G+ DSKK+
Sbjct: 1   MPSETLFRRHRTIPTGNIMHILTAGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKL 60

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           S KKR+ L E I   A+   +++++ + I   NI  AT+ A+  AV  L   P    IDG
Sbjct: 61  SEKKRDALAEMIKEQAVAWHVAASTPEEIASLNILHATMLAMKRAVYGLAARPEKIFIDG 120

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
             IPE L   A AV+KGDS  + I+AAS++AK  RD  M    ++ P YGFD H GY T 
Sbjct: 121 NRIPEHLGIPAEAVVKGDSKIIEISAASVLAKTARDAEMYALAQRRPQYGFDKHKGYGTK 180

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207
           +H + +K+ G    HR  F P+RNL
Sbjct: 181 QHLEALKQYGVLPEHRRDFAPVRNL 205


>gi|222474916|ref|YP_002563331.1| ribonuclease HII (rnhB) [Anaplasma marginale str. Florida]
 gi|222419052|gb|ACM49075.1| ribonuclease HII (rnhB) [Anaplasma marginale str. Florida]
          Length = 339

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 91/205 (44%), Positives = 125/205 (60%), Gaps = 2/205 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKI 63
           +   P F +E  +R   +  + G+DEVG GA+AGPVV AA+ L     +    I DSK +
Sbjct: 101 MNRMPSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKAL 160

Query: 64  SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
           S KKREEL+ KIT+ A   +  A  + I++HNI  A+  ++  A++NL V     L+DG 
Sbjct: 161 SSKKREELFCKITAHARYGVGFARVREIEQHNILVASHISMKRALQNLGVKADLVLVDGS 220

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
             P  LP     ++KGDSIS SIAAASIIAKVTRDR MR  H++YP+Y ++ + GY T  
Sbjct: 221 RAPAGLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKA 280

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLS 208
           H Q +K  G +  HR TF P++ LS
Sbjct: 281 HMQSLKLYGKTAQHRSTFAPVKQLS 305


>gi|115352089|ref|YP_773928.1| ribonuclease HII [Burkholderia ambifaria AMMD]
 gi|122322850|sp|Q0BE29|RNH2_BURCM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|115282077|gb|ABI87594.1| Ribonuclease H [Burkholderia ambifaria AMMD]
          Length = 217

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 89/183 (48%), Positives = 121/183 (66%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83
            V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKR+ LY+ I + A    +
Sbjct: 27  IVCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKALSAKKRDALYDLIVARASAFCV 86

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS   ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  +A A++ GD++ 
Sbjct: 87  ASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LTVRAEAIVSGDALV 145

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+++P YGF+ HVGY T +H   ++E GP  +HR +F P
Sbjct: 146 PSISAASILAKVTRDRMLVDLHERFPVYGFNMHVGYSTPQHLAALREHGPCEVHRRSFAP 205

Query: 204 LRN 206
           +R 
Sbjct: 206 VRE 208


>gi|115380723|ref|ZP_01467629.1| ribonuclease HII [Stigmatella aurantiaca DW4/3-1]
 gi|310820560|ref|YP_003952918.1| ribonuclease hII [Stigmatella aurantiaca DW4/3-1]
 gi|115362268|gb|EAU61597.1| ribonuclease HII [Stigmatella aurantiaca DW4/3-1]
 gi|309393632|gb|ADO71091.1| Ribonuclease HII [Stigmatella aurantiaca DW4/3-1]
          Length = 282

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 87/197 (44%), Positives = 120/197 (60%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI-SHKKREE 70
              E  + E+ +  VAG+DE G   LAGPVV AA IL  N    G++DSKKI   ++REE
Sbjct: 67  LRYETELWEQGLERVAGVDEAGMAPLAGPVVAAAAILPRNYRLKGLDDSKKILDAERREE 126

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L   +   A+  ++  A  + ID+ NI+ A L A+  AV  L + P  AL+D R IPE  
Sbjct: 127 LAAALKRDAVAWAVGIAEVEEIDRLNIYHAGLLAMRRAVLGLGLTPDYALVDARKIPEC- 185

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           PC    +I+GD++S+SIAAAS++AK +RDR+M     +YP YG   H GYPT +H Q ++
Sbjct: 186 PCPQRGIIRGDALSMSIAAASVLAKTSRDRMMGELDARYPGYGLAVHKGYPTPQHVQALR 245

Query: 190 EKGPSCIHRLTFRPLRN 206
           EKG   IHR +F P+R 
Sbjct: 246 EKGVLPIHRRSFGPVRE 262


>gi|167758983|ref|ZP_02431110.1| hypothetical protein CLOSCI_01329 [Clostridium scindens ATCC 35704]
 gi|167663390|gb|EDS07520.1| hypothetical protein CLOSCI_01329 [Clostridium scindens ATCC 35704]
          Length = 219

 Score =  251 bits (642), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 93/195 (47%), Positives = 119/195 (61%), Gaps = 7/195 (3%)

Query: 17  MVREKNMW---PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            V EK       + GIDEVGRG LAGPVV  A+IL  +     +NDSKK+S KKRE LYE
Sbjct: 27  SVYEKEYGACRYICGIDEVGRGPLAGPVVAGAVILPKDGSILYLNDSKKLSEKKREALYE 86

Query: 74  KITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   A+   I       ID+ NI +AT +A+  A+ NL+V P   L D  +IP+ +  +
Sbjct: 87  EIMERAVATGIGIVGSARIDEINILQATYEAMRMAISNLKVEPDLLLNDAVTIPQ-VSIR 145

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              +IKGD+ S+SIAAASIIAKVTRDRLM    +  P YGF S+ GY T  H   ++E G
Sbjct: 146 QVPIIKGDAKSVSIAAASIIAKVTRDRLMVEYDQVLPGYGFASNKGYGTKAHIAGLRELG 205

Query: 193 PSCIHRLTFRPLRNL 207
           PS IHR TF  ++N 
Sbjct: 206 PSPIHRATF--IKNF 218


>gi|307107517|gb|EFN55760.1| hypothetical protein CHLNCDRAFT_23163 [Chlorella variabilis]
          Length = 311

 Score =  251 bits (642), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 81/198 (40%), Positives = 115/198 (58%), Gaps = 6/198 (3%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P  E E  + ++    VAG+DE GRG LAGPVV AA ++  +    G++DSKK+S ++RE
Sbjct: 80  PSREFERELWQQGYARVAGVDEAGRGPLAGPVVAAACVVPEHVDIAGMDDSKKLSAQQRE 139

Query: 70  ELYEKITSS--AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
            LY ++T     + +      + ID  NI +A L A+  A   L   P   L+DG  +P+
Sbjct: 140 ALYAQLTGHPDVLWAACVVEAEEIDAINILQAALKAMEGAAAGLTAQPDFLLVDGNRLPK 199

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
               ++  ++KGDS S  IAAAS+IAKVTRDRLM   H+ +P Y F  H GY   +H + 
Sbjct: 200 ----RSRPIVKGDSKSYCIAAASVIAKVTRDRLMEQHHEHWPQYNFAGHKGYCVPEHVEA 255

Query: 188 IKEKGPSCIHRLTFRPLR 205
           I++ GP  +HR TF P R
Sbjct: 256 IRQHGPCPVHRRTFAPTR 273


>gi|149374423|ref|ZP_01892197.1| ribonuclease HII [Marinobacter algicola DG893]
 gi|149361126|gb|EDM49576.1| ribonuclease HII [Marinobacter algicola DG893]
          Length = 225

 Score =  251 bits (642), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 87/202 (43%), Positives = 121/202 (59%), Gaps = 5/202 (2%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           + +RP    E   + +    +AG+DEVGRG L G VV AA+IL+P     G+ DSKK++ 
Sbjct: 1   MSKRPLPPFECQYQGR---LLAGVDEVGRGPLVGAVVTAAVILNPERPIPGLADSKKLTD 57

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           K+RE LYE+I   A   S+       ID+ NI +AT+ A+  AV  L V P   L+DG  
Sbjct: 58  KRREALYEQIIERAASWSLGRCEADEIDRLNIFQATMVAMERAVAGLHVEPEYVLVDGNR 117

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
            P      +  V+KGDS   +I+AASIIAKVTRDR M + H+++P+YGF SH GYPT  H
Sbjct: 118 CPR-WRWASEPVVKGDSRVEAISAASIIAKVTRDREMAVLHEEFPEYGFASHKGYPTPVH 176

Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206
            + +   G +  HR +FRP++ 
Sbjct: 177 LEALGRLGATAYHRRSFRPVQE 198


>gi|153809167|ref|ZP_01961835.1| hypothetical protein BACCAC_03477 [Bacteroides caccae ATCC 43185]
 gi|149128143|gb|EDM19363.1| hypothetical protein BACCAC_03477 [Bacteroides caccae ATCC 43185]
          Length = 200

 Score =  251 bits (642), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 79/186 (42%), Positives = 106/186 (56%), Gaps = 3/186 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++ K+R  L E I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEREAIAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + ID+ NI +A+  A++ AV+ L   P   LIDG    +        VIKGD   LS
Sbjct: 73  VSPEEIDEINILRASFLAMHRAVDQLSTRPEHLLIDGNRFNKYPGIPHTTVIKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL- 204
           IAAASI+AK  RD  M   H++YP Y ++ + GYPT KH+  I E G +  HR+TF  L 
Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPYYDWNRNKGYPTKKHRAAIAEHGTTPYHRMTFNLLG 192

Query: 205 -RNLSV 209
              LS+
Sbjct: 193 GEQLSL 198


>gi|325983657|ref|YP_004296059.1| ribonuclease H [Nitrosomonas sp. AL212]
 gi|325533176|gb|ADZ27897.1| Ribonuclease H [Nitrosomonas sp. AL212]
          Length = 190

 Score =  251 bits (642), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 82/184 (44%), Positives = 107/184 (58%), Gaps = 2/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + G+DE GRG LAGPV  A ++L+      G+ DSKK+S  KR  L   I   A   SIS
Sbjct: 2   ICGVDEAGRGPLAGPVYAACVVLNKTLTIDGLADSKKLSETKRNALAVIIKKLAKAWSIS 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS Q ID+ NI +A+L A+  AVE+L   P   LIDG   P  L C    +++GDS+  
Sbjct: 62  YASVQEIDRLNILQASLLAMKRAVESLPFTPDIVLIDGNQSPH-LHCPMRTIVRGDSLIP 120

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AK  RD  M+  H+ +P YGFD H GYPT  H   ++  G   IHR +F P+
Sbjct: 121 EISAASILAKTARDAEMQRLHRHFPRYGFDKHKGYPTKVHLAALQRYGACAIHRQSFAPV 180

Query: 205 RNLS 208
           R L 
Sbjct: 181 RTLQ 184


>gi|315127144|ref|YP_004069147.1| RNAse HII [Pseudoalteromonas sp. SM9913]
 gi|315015658|gb|ADT68996.1| RNAse HII [Pseudoalteromonas sp. SM9913]
          Length = 199

 Score =  251 bits (642), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 81/192 (42%), Positives = 115/192 (59%), Gaps = 2/192 (1%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76
            +   N+  +AG+DEVGRG L G VV AA+IL+P     G+ DSKK++ KKR+ L  +I 
Sbjct: 2   QIERPNVTLIAGVDEVGRGPLVGDVVTAAVILNPAKPIAGLADSKKLTDKKRQLLAIEIK 61

Query: 77  SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135
             A+  +I   S   ID+ NI +AT+ A+  AVE L  +P    +DG  +P+ L   A A
Sbjct: 62  EKALCYAIGRCSPSEIDELNILQATMLAMSRAVEALSTVPEFVFVDGNRLPK-LAMPAQA 120

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           V+KGDS+   I+AASI+AKV RD  M     +YP YGF  H GYPT  H   +++ G   
Sbjct: 121 VVKGDSLVAEISAASILAKVARDDEMIELDARYPQYGFAGHKGYPTKAHFAALEQYGAID 180

Query: 196 IHRLTFRPLRNL 207
            HR +F+P++ +
Sbjct: 181 EHRKSFKPVQRV 192


>gi|160939135|ref|ZP_02086486.1| hypothetical protein CLOBOL_04029 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438098|gb|EDP15858.1| hypothetical protein CLOBOL_04029 [Clostridium bolteae ATCC
           BAA-613]
          Length = 222

 Score =  251 bits (642), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 93/205 (45%), Positives = 121/205 (59%), Gaps = 8/205 (3%)

Query: 8   ERPHFELEAMV-REKNM---WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           E+    LEAM   EK       + GIDE GRG LAGPV   A++L        +NDSKK+
Sbjct: 14  EQEMARLEAMAEYEKEYDACTYICGIDEAGRGPLAGPVAAGAVVLPKGCRILYLNDSKKL 73

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           S K+REEL+ +I   A+  ++  AS   ID+ NI +AT +A+  AV+ L V P   L D 
Sbjct: 74  SEKRREELFLEIKEKAVAWNVGLASPARIDEINILQATYEAMREAVKGLSVKPEVLLNDA 133

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
            +IP  L      +IKGD+ SLSIAAASI+AKVTRD +M    + +P YGF  H GY TA
Sbjct: 134 VTIP-GLEGVQVPIIKGDAKSLSIAAASILAKVTRDHMMAEYEELFPGYGFAKHKGYGTA 192

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207
            H   I+E GP  IHR +F  +RN+
Sbjct: 193 AHIAAIRELGPCPIHRRSF--IRNI 215


>gi|209527547|ref|ZP_03276049.1| Ribonuclease H [Arthrospira maxima CS-328]
 gi|209492035|gb|EDZ92388.1| Ribonuclease H [Arthrospira maxima CS-328]
          Length = 223

 Score =  251 bits (642), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 83/186 (44%), Positives = 109/186 (58%), Gaps = 5/186 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII 81
           VAGIDEVGRGA  GPVV AA+ L    I      G+ DSKK++H  R  L   I S AI 
Sbjct: 31  VAGIDEVGRGAWFGPVVAAAVQLSETTILELAAAGVKDSKKLTHNDRLSLSTLIRSKAIA 90

Query: 82  S-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             I  AS + ID+ NI +AT  A+  ++  LQ  P+  L+DG  +  +L     A++KGD
Sbjct: 91  CQIGWASAREIDRLNILQATQLAMRRSILKLQPPPQFCLVDGNRLIPNLSIPQQAIVKGD 150

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S  + IAA+SI+AKV RD LM    + YP YGF  H GY T +H+Q ++  GP   HR +
Sbjct: 151 SHCVVIAASSIVAKVWRDELMTRLDRTYPQYGFAQHKGYGTKQHKQALQSYGPCFHHRFS 210

Query: 201 FRPLRN 206
           F P+R 
Sbjct: 211 FAPVRQ 216


>gi|254282787|ref|ZP_04957755.1| ribonuclease HII [gamma proteobacterium NOR51-B]
 gi|219678990|gb|EED35339.1| ribonuclease HII [gamma proteobacterium NOR51-B]
          Length = 204

 Score =  251 bits (642), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 86/193 (44%), Positives = 116/193 (60%), Gaps = 3/193 (1%)

Query: 16  AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
            +  E++   VAG+DEVGRG LAG VV AA+IL  +  P GI DSKK+S K+R +L  +I
Sbjct: 5   NLFDERSGQRVAGVDEVGRGPLAGDVVAAAVILG-DVSPAGITDSKKLSPKRRAQLAVQI 63

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
            + A   SI  AS   ID+ NI +A+L A+  AVE L + P   L+DG  +P     ++ 
Sbjct: 64  KAEACCWSIGRASVDEIDRLNILEASLLAMTRAVEGLSLRPDFILVDGNRLPR-WDYRSE 122

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            V+ GD I  +I AASIIAKV RD  +    ++YP YGF  H GYPT  H + +   G +
Sbjct: 123 PVVGGDGIEPAIGAASIIAKVQRDEELIALDEQYPGYGFAQHKGYPTRAHLEALASLGVT 182

Query: 195 CIHRLTFRPLRNL 207
            IHR +F P+R L
Sbjct: 183 PIHRRSFAPVRRL 195


>gi|163750365|ref|ZP_02157605.1| ribonuclease HII [Shewanella benthica KT99]
 gi|161329855|gb|EDQ00841.1| ribonuclease HII [Shewanella benthica KT99]
          Length = 218

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 86/191 (45%), Positives = 120/191 (62%), Gaps = 8/191 (4%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
              AG+DEVGRG L G VV AA+ILDP N   G+NDSKK++ KKRE L+ +I   A+ IS
Sbjct: 18  GLYAGVDEVGRGPLVGNVVTAAVILDPKNPILGLNDSKKLTEKKREALFTEIHEKALSIS 77

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-------EDLPCQAFA 135
           +  A+ + ID+ NI  AT+ A+  AV  L++ P   L+DG   P        +L  +A A
Sbjct: 78  VGHATPEEIDELNILHATMLAMQRAVAGLEIKPVKVLVDGNRAPIFHHGDNTELALEAHA 137

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           ++KGD +   I+AASI+AKV RDR M++   ++P YGF  H GYPT  H Q +++ G   
Sbjct: 138 IVKGDGLIAGISAASIVAKVIRDREMKLLDMEHPQYGFAKHKGYPTQAHFQALEQHGVLA 197

Query: 196 IHRLTFRPLRN 206
            HR +FRP+R+
Sbjct: 198 EHRKSFRPVRD 208


>gi|186476082|ref|YP_001857552.1| ribonuclease HII [Burkholderia phymatum STM815]
 gi|184192541|gb|ACC70506.1| Ribonuclease H [Burkholderia phymatum STM815]
          Length = 249

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 89/184 (48%), Positives = 120/184 (65%), Gaps = 3/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-IS 82
            V G+DE GRG LAGPVV AA+ILDP      G+ DSK ++ KKR+ELYEKI   A+   
Sbjct: 32  VVCGVDEAGRGPLAGPVVAAAVILDPAKPRIRGLTDSKVLTAKKRDELYEKIIERALAYC 91

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           ++SAS + ID  NI  AT+ A+  AVE L+V P  A IDG   P  L  ++ A++ GD +
Sbjct: 92  VASASVEEIDSLNILHATMLAMKRAVEGLRVTPTLAKIDGNRCP-SLSIRSEAIVSGDLL 150

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKVTRDR++   H+ +P YGFD+H GY T +H   ++E GP   HR +F 
Sbjct: 151 VPCISAASILAKVTRDRMLLELHRMFPVYGFDAHAGYGTPQHLTALREHGPCEHHRRSFA 210

Query: 203 PLRN 206
           P+R+
Sbjct: 211 PVRD 214


>gi|171318092|ref|ZP_02907261.1| Ribonuclease H [Burkholderia ambifaria MEX-5]
 gi|171096716|gb|EDT41601.1| Ribonuclease H [Burkholderia ambifaria MEX-5]
          Length = 217

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 90/183 (49%), Positives = 122/183 (66%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS-SAIISI 83
            V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKR+ LY+ I + S+   +
Sbjct: 27  IVCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKALSAKKRDALYDLIVARSSAYCV 86

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS   ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  +A A++ GD++ 
Sbjct: 87  ASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LMVRAEAIVSGDALV 145

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+++P YGF+ HVGY T KH   ++E GP  +HR +F P
Sbjct: 146 PSISAASILAKVTRDRMLVDLHERFPVYGFNVHVGYSTPKHLAALREHGPCEVHRRSFAP 205

Query: 204 LRN 206
           +R 
Sbjct: 206 VRE 208


>gi|268683032|ref|ZP_06149894.1| ribonuclease HII [Neisseria gonorrhoeae PID332]
 gi|268623316|gb|EEZ55716.1| ribonuclease HII [Neisseria gonorrhoeae PID332]
          Length = 212

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 82/205 (40%), Positives = 112/205 (54%), Gaps = 3/205 (1%)

Query: 6   IPERPHFELEAMVREKNMWPV--AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           +P    F     +   N+  +  AG+DE GRG L G V  AA+IL       G+ DSKK+
Sbjct: 1   MPSETIFRRHRTIPTGNIMHILTAGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKL 60

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           S KKR+ L E I   A+   +++++ + I   NI  AT+ A+  AV  L   P    IDG
Sbjct: 61  SEKKRDALAEMIKEQAVAWHVAASTPEEIASLNILHATMLAMKRAVYGLAARPEKIFIDG 120

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
             IPE L   A AV+KGDS  + I+AAS++AK  RD  M    ++ P YGFD H GY T 
Sbjct: 121 NRIPEHLGIPAEAVVKGDSKIIEISAASVLAKTARDAEMYALAQRRPQYGFDKHKGYGTK 180

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207
           +H + +K+ G    HR  F P+RNL
Sbjct: 181 QHLEALKQYGVLPEHRRDFAPVRNL 205


>gi|119477116|ref|ZP_01617352.1| ribonuclease HII [marine gamma proteobacterium HTCC2143]
 gi|119449479|gb|EAW30717.1| ribonuclease HII [marine gamma proteobacterium HTCC2143]
          Length = 201

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 88/194 (45%), Positives = 119/194 (61%), Gaps = 2/194 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
           +EA V   +   +AG+DEVGRG LAG VV AA+ILDP N   G++DSKK++ KKRE L+ 
Sbjct: 1   MEAFVSNYSGILLAGVDEVGRGPLAGDVVAAAVILDPANPIRGLDDSKKLTEKKREALFP 60

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   A+   ++ AS + ID+ NI +A+L A+  AVE L + P   L+DG  +P      
Sbjct: 61  EIQEKALSWFVARASVREIDELNILQASLLAMKRAVEGLVLQPEHVLVDGNKLPR-WAYS 119

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
           A AV++GDS    I AASI+AKV RDR M     +YP YGF  H GYPT  H   +   G
Sbjct: 120 AEAVVRGDSRVQVIGAASILAKVVRDREMVAFDDEYPGYGFAGHKGYPTRVHMTALDVLG 179

Query: 193 PSCIHRLTFRPLRN 206
            + IHR +F P++ 
Sbjct: 180 VTPIHRSSFGPVKR 193


>gi|160945102|ref|ZP_02092328.1| hypothetical protein FAEPRAM212_02621 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442833|gb|EDP19838.1| hypothetical protein FAEPRAM212_02621 [Faecalibacterium prausnitzii
           M21/2]
 gi|295105649|emb|CBL03193.1| RNase HII [Faecalibacterium prausnitzii SL3/3]
          Length = 215

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 86/193 (44%), Positives = 115/193 (59%), Gaps = 2/193 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P +  +A VR +     AG+DE GRG L GPV VAA ILDP N  +GINDSKK++ KKRE
Sbjct: 12  PLYAFDAEVRSQ-YGCFAGVDEAGRGPLCGPVCVAACILDPENPVYGINDSKKLTEKKRE 70

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            L+++I   A+   I     + ID+ NI  AT+  +  AVE L ++P   L+DG   P  
Sbjct: 71  ALFDEICEKALAYRIIFVGPEVIDRENILNATMGGMQQAVEELDIVPNLVLVDGNRTPAG 130

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L   A  V+KGD+ S SI AAS++AKV+RDR M    K+YP Y    H GYPT  H ++I
Sbjct: 131 LQIPAQPVVKGDATSASIGAASVLAKVSRDRYMLELDKQYPQYQLAKHKGYPTKLHYELI 190

Query: 189 KEKGPSCIHRLTF 201
            + G    +R +F
Sbjct: 191 AQYGIQPFYRRSF 203


>gi|85860168|ref|YP_462370.1| ribonuclease HII [Syntrophus aciditrophicus SB]
 gi|97189377|sp|Q2LVU5|RNH2_SYNAS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|85723259|gb|ABC78202.1| ribonuclease HII [Syntrophus aciditrophicus SB]
          Length = 212

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 83/190 (43%), Positives = 115/190 (60%), Gaps = 2/190 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E    E     +AG+DE GRG LAGPVV AA+IL        I DSKK+S  KRE+LYE
Sbjct: 7   FEREAYEDGYRVIAGVDEAGRGPLAGPVVAAAVILPHGYSHPEITDSKKLSAGKREKLYE 66

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   A+ I +       ID+ NI +ATL A+  AV++L + P   L+DG      L   
Sbjct: 67  VIKRDALAIGVGVVESPVIDQVNILRATLRAMAEAVDDLSIRPDFLLVDGLH-RIFLNIS 125

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              ++KGD++S+SIA+ASIIAKV+RDR+M I H+++P Y F  + GY T +H++ I+  G
Sbjct: 126 QKTIVKGDTLSVSIASASIIAKVSRDRIMEIYHRQFPQYNFLKNKGYGTREHREAIQNFG 185

Query: 193 PSCIHRLTFR 202
              IHR +F+
Sbjct: 186 FCKIHRRSFK 195


>gi|228992565|ref|ZP_04152492.1| Ribonuclease HII [Bacillus pseudomycoides DSM 12442]
 gi|228767199|gb|EEM15835.1| Ribonuclease HII [Bacillus pseudomycoides DSM 12442]
          Length = 272

 Score =  251 bits (641), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 94/195 (48%), Positives = 127/195 (65%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y+
Sbjct: 77  YEKALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPKDFYIPGLNDSKKLSEAKRERFYD 136

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   AI I +   S Q ID+ NI++AT  A+  A+ NL   P   LID   +P   P  
Sbjct: 137 EIKEQAIAIGVGIVSPQVIDEINIYQATKRAMLDAIANLACTPEHLLIDAMKLPT--PIP 194

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   K+YP YGF+ H+GY T +H Q I+  G
Sbjct: 195 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGKEYPAYGFEQHMGYGTKQHLQAIEMYG 254

Query: 193 PSCIHRLTFRPLRNL 207
               HR TF P++++
Sbjct: 255 VLEEHRKTFAPIKDM 269


>gi|226325139|ref|ZP_03800657.1| hypothetical protein COPCOM_02931 [Coprococcus comes ATCC 27758]
 gi|225206487|gb|EEG88841.1| hypothetical protein COPCOM_02931 [Coprococcus comes ATCC 27758]
          Length = 253

 Score =  251 bits (641), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 87/178 (48%), Positives = 116/178 (65%), Gaps = 2/178 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            + GIDEVGRG LAGPVV  A+IL        INDSKK+S  KR+ELY++I   A+ + +
Sbjct: 72  FICGIDEVGRGPLAGPVVAGAVILPKECEILYINDSKKLSAAKRDELYDEIMDKAVAVGL 131

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             AS   ID+ NI +AT +A+  A+ NL+V P   L D  +IPE +      +IKGD+ S
Sbjct: 132 GMASPARIDEINILQATYEAMRQAIGNLKVEPDLLLNDAVTIPEVV-IPQVPIIKGDAKS 190

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +SIAAASI+AKVTRDRLM    K  P YGF S+ GY +A+H + ++  GP+ IHR +F
Sbjct: 191 VSIAAASIVAKVTRDRLMEEYDKVLPGYGFASNKGYGSAEHIKALQTLGPTPIHRRSF 248


>gi|332532224|ref|ZP_08408105.1| ribonuclease HII [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038322|gb|EGI74767.1| ribonuclease HII [Pseudoalteromonas haloplanktis ANT/505]
          Length = 200

 Score =  251 bits (641), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 81/192 (42%), Positives = 113/192 (58%), Gaps = 2/192 (1%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76
            +   N+  +AG+DEVGRG L G VV AA+ILDP     G+ DSKK++ KKR+ L  +I 
Sbjct: 2   QIDRPNVSLIAGVDEVGRGPLVGDVVTAAVILDPTKPIAGLADSKKLTDKKRQALAIEIK 61

Query: 77  SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135
             A+  +    S   ID+ NI  AT+ A+  AVE L   P    IDG  +P+ L   A A
Sbjct: 62  EKALCYAYGRCSPTEIDELNILHATMLAMSRAVEALSTQPEFVFIDGNRLPK-LTMPAQA 120

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           V+KGDS+   I+AASI+AKV RD  M     ++P+YGF  H GYPT  H   +++ G   
Sbjct: 121 VVKGDSLVAEISAASILAKVARDDEMLELDARHPEYGFAGHKGYPTKAHFAALEQYGAID 180

Query: 196 IHRLTFRPLRNL 207
            HR +F+P++ +
Sbjct: 181 EHRKSFKPVQRV 192


>gi|238787221|ref|ZP_04631020.1| Ribonuclease HII [Yersinia frederiksenii ATCC 33641]
 gi|238724483|gb|EEQ16124.1| Ribonuclease HII [Yersinia frederiksenii ATCC 33641]
          Length = 183

 Score =  251 bits (641), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 82/180 (45%), Positives = 110/180 (61%), Gaps = 2/180 (1%)

Query: 29  IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSAS 87
           +DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++IT  A+  S+  A 
Sbjct: 1   MDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEITDKALSWSLGRAE 60

Query: 88  HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147
            + ID  NI  AT+ A+  AV  L ++P   LIDG   P+ L   + AV+KGDS    I+
Sbjct: 61  PEEIDHLNILHATMLAMQRAVAGLHIVPDYVLIDGNRCPK-LAMPSLAVVKGDSRVAEIS 119

Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           AASI+AKVTRDR M      +P+YGF  H GYPT  H + +   G +  HR +F P++ +
Sbjct: 120 AASILAKVTRDREMTELDLHFPEYGFAQHKGYPTPVHLETLAAFGATEHHRRSFGPVKRV 179


>gi|307294539|ref|ZP_07574381.1| Ribonuclease H [Sphingobium chlorophenolicum L-1]
 gi|306879013|gb|EFN10231.1| Ribonuclease H [Sphingobium chlorophenolicum L-1]
          Length = 199

 Score =  251 bits (641), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 85/201 (42%), Positives = 119/201 (59%), Gaps = 5/201 (2%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
            P F  E      +   VAG+DE GRG LAGPVV AA+IL   + P G+NDSK++S  +R
Sbjct: 1   MPDFLHE---LRHHPGLVAGVDEAGRGPLAGPVVAAAVILRREDCPEGLNDSKQLSAARR 57

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
             L  +I + A+   +  AS + ID  NI  AT+ A+  AVE L       L+DG   P+
Sbjct: 58  AVLEGEIKARALCWGLGVASVEEIDSINILWATMLAMTRAVEALTHDCAHVLVDGNRCPQ 117

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
                + AV++GD+  LSIAAASI+AK  RDR+M  A   +P YG++S+ GY + KH   
Sbjct: 118 -WRWASTAVVEGDAKCLSIAAASILAKEARDRMMVEAAAAHPHYGWESNKGYGSPKHLAA 176

Query: 188 IKEKGPSCIHRLTFRPLRNLS 208
           ++E GP+ +HR +F P+  LS
Sbjct: 177 LREHGPTPLHRRSFAPVAQLS 197


>gi|239993624|ref|ZP_04714148.1| ribonuclease HII [Alteromonas macleodii ATCC 27126]
          Length = 190

 Score =  251 bits (641), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 87/184 (47%), Positives = 113/184 (61%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP N   G+ DSKK+S KKR  L ++I   A+  +I
Sbjct: 4   LIAGVDEVGRGPLVGDVVTAAVILDPENPIEGLTDSKKLSEKKRVALAQEIREKALYWNI 63

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             AS + IDK NI  AT+ A+  AVE L V P    +DG  +P     ++ AV+KGDS+ 
Sbjct: 64  GRASPEEIDKLNILHATMLAMIRAVEGLPVRPDFVRVDGNRVPA-WNFESEAVVKGDSLH 122

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASIIAKV RD  M   H+ YP Y F  H GYPT  H + I E G    +R +F+P
Sbjct: 123 AEISAASIIAKVERDNDMISLHEAYPQYNFAGHKGYPTKAHFEAIAEYGILDCYRKSFKP 182

Query: 204 LRNL 207
           ++ L
Sbjct: 183 VKAL 186


>gi|238751436|ref|ZP_04612928.1| Ribonuclease HII [Yersinia rohdei ATCC 43380]
 gi|238710303|gb|EEQ02529.1| Ribonuclease HII [Yersinia rohdei ATCC 43380]
          Length = 183

 Score =  251 bits (641), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 82/180 (45%), Positives = 111/180 (61%), Gaps = 2/180 (1%)

Query: 29  IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSAS 87
           +DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++I   A+  S+  A 
Sbjct: 1   MDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEIIDKALSWSLGRAE 60

Query: 88  HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147
            + ID  NI  AT+ A+  AV  L ++P   LIDG   P+ L   + AV+KGDS    I+
Sbjct: 61  PEEIDHLNILHATMLAMQRAVAGLHIVPDYVLIDGNRCPQ-LAMPSLAVVKGDSRVAEIS 119

Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           AASI+AKVTRDR M    + +P+YGF  H GYPTA H + +   G +  HR +F P++ +
Sbjct: 120 AASILAKVTRDREMTELDRHFPEYGFAQHKGYPTAVHLEKLSTFGATEHHRRSFGPVKRV 179


>gi|255281039|ref|ZP_05345594.1| ribonuclease HII [Bryantella formatexigens DSM 14469]
 gi|255268487|gb|EET61692.1| ribonuclease HII [Bryantella formatexigens DSM 14469]
          Length = 252

 Score =  251 bits (641), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 87/197 (44%), Positives = 120/197 (60%), Gaps = 6/197 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + EK    + GIDE GRG LAGPVV  A+IL        +NDSK++S K RE+L
Sbjct: 60  LHYER-LYEK-YTYICGIDEAGRGPLAGPVVAGAVILPKGCTIRYLNDSKQLSEKMREQL 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y++I   A+ + +  AS   ID+ NI +AT +A+  A+  L V P   L D   IP    
Sbjct: 118 YDEIMERAVAVGVGMASPARIDEINILQATYEAMRDAIGALSVRPDILLNDAVRIP-GTD 176

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            +   ++KGD+ SLSIAAAS+IAKVTRDRLM+      P+YGF +H GY +A H + +++
Sbjct: 177 IEQVPIVKGDAKSLSIAAASVIAKVTRDRLMKEYDALMPEYGFAAHKGYGSAAHIEALRQ 236

Query: 191 KGPSCIHRLTFRPLRNL 207
            GPS IHR +F  L+N+
Sbjct: 237 YGPSPIHRASF--LKNI 251


>gi|333029420|ref|ZP_08457481.1| Ribonuclease H [Bacteroides coprosuis DSM 18011]
 gi|332740017|gb|EGJ70499.1| Ribonuclease H [Bacteroides coprosuis DSM 18011]
          Length = 199

 Score =  251 bits (641), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 79/181 (43%), Positives = 111/181 (61%), Gaps = 1/181 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL  +     +NDSK++S KKR EL   I + A+   +  
Sbjct: 13  AGCDEAGRGCLAGPVFAAAVILPSDFENNLLNDSKQLSEKKRYELRVIIENEALACGVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + IDK NI  A+  A++ A++ L+V P   LIDG         +   ++KGD+  LS
Sbjct: 73  VSVEEIDKINILNASFLAMHRAIDCLKVRPEHLLIDGNRFNPYDGIKHTTIVKGDATFLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           IAAASI+AK  RD  M   H KYP+Y ++ + GYPT KH++ I++ G + +HR TFR L+
Sbjct: 133 IAAASILAKTYRDDYMLAQHNKYPNYDWNHNKGYPTKKHREAIEKYGITPLHRHTFRLLK 192

Query: 206 N 206
           +
Sbjct: 193 D 193


>gi|217961257|ref|YP_002339825.1| ribonuclease HII [Bacillus cereus AH187]
 gi|229197947|ref|ZP_04324662.1| Ribonuclease [Bacillus cereus m1293]
 gi|226736815|sp|B7HLH0|RNH2_BACC7 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|217062970|gb|ACJ77220.1| ribonuclease HII [Bacillus cereus AH187]
 gi|228585526|gb|EEK43629.1| Ribonuclease [Bacillus cereus m1293]
          Length = 257

 Score =  251 bits (641), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 93/195 (47%), Positives = 129/195 (66%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y+
Sbjct: 62  YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPKDFYIPGLNDSKKLSEAKRERFYD 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I + AI I +   S Q ID+ NI++AT  A+  AV NL   P+  LID   +P   P  
Sbjct: 122 EIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPT--PIP 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G
Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 240 ILEEHRKSFAPIKDM 254


>gi|148557468|ref|YP_001265050.1| ribonuclease H [Sphingomonas wittichii RW1]
 gi|189043662|sp|A5VF46|RNH2_SPHWW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|148502658|gb|ABQ70912.1| Ribonuclease H [Sphingomonas wittichii RW1]
          Length = 202

 Score =  251 bits (641), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 84/200 (42%), Positives = 116/200 (58%), Gaps = 5/200 (2%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F+LE      +  P+AG+DE GRG LAGPVV AA+ILD   +P GI+DSKK+  + R 
Sbjct: 4   PSFDLEIA----HPLPLAGVDEAGRGPLAGPVVAAAVILDRGRVPAGIDDSKKLGAEARA 59

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           +L  KI   A + +  A+ + ID+ NI  A++ A+  AV  L V P   L+DG   P   
Sbjct: 60  DLCGKIREVAHVGVGIATVEEIDEINILWASMLAMERAVAALGVEPAMVLVDGNRCPR-W 118

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              +  VI GD++ LSIAAASI+AK  RDR+M      +P YG+  + GY T  H   + 
Sbjct: 119 TRPSQWVIGGDALCLSIAAASIVAKEERDRMMADYDVHHPGYGWAKNKGYGTPAHLDALA 178

Query: 190 EKGPSCIHRLTFRPLRNLSV 209
             GPS +HR +F P+   S+
Sbjct: 179 RLGPSPLHRRSFAPVAQFSL 198


>gi|94497432|ref|ZP_01304002.1| Ribonuclease H [Sphingomonas sp. SKA58]
 gi|94423063|gb|EAT08094.1| Ribonuclease H [Sphingomonas sp. SKA58]
          Length = 199

 Score =  251 bits (641), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 86/202 (42%), Positives = 120/202 (59%), Gaps = 5/202 (2%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
            P F  E +    +   VAG+DE GRG LAGPVV AA+IL  ++ P G+NDSK++S KKR
Sbjct: 1   MPDFSHERI---HHPGLVAGVDEAGRGPLAGPVVAAAVILRADDCPDGLNDSKQLSAKKR 57

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
             L  ++ + A+   I  AS   ID  NI  AT+ A+  AVE L       L+DG   P+
Sbjct: 58  AALEAQVKARALCWGIGVASVAEIDDLNILWATMLAMTRAVEALSADCAHVLVDGNRCPQ 117

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
                + AV+ GD+  LSIAAASI+AK  RDR+M  A   +P YG++S+ GY +A H   
Sbjct: 118 -WRWASTAVVDGDAKCLSIAAASILAKEERDRMMIAAAADHPHYGWESNKGYGSAHHLAA 176

Query: 188 IKEKGPSCIHRLTFRPLRNLSV 209
           ++E GP+ +HR +F P+  L +
Sbjct: 177 LREHGPTPLHRRSFSPVAQLLL 198


>gi|52141651|ref|YP_085178.1| ribonuclease HII [Bacillus cereus E33L]
 gi|81686573|sp|Q636I9|RNH2_BACCZ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|51975120|gb|AAU16670.1| ribonuclease HII (RNase HII) [Bacillus cereus E33L]
          Length = 257

 Score =  251 bits (641), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 94/195 (48%), Positives = 128/195 (65%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S  KRE  Y+
Sbjct: 62  YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYD 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I + AI I +   S Q ID+ NI++AT  A+  AV NL   P   LID   +P   P  
Sbjct: 122 EIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPEYLLIDAMKLPT--PIP 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G
Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEVHG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 240 VLEEHRKSFAPIKDM 254


>gi|228998613|ref|ZP_04158200.1| Ribonuclease HII [Bacillus mycoides Rock3-17]
 gi|228761081|gb|EEM10040.1| Ribonuclease HII [Bacillus mycoides Rock3-17]
          Length = 272

 Score =  251 bits (641), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 94/195 (48%), Positives = 127/195 (65%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y+
Sbjct: 77  YEKALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 136

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   AI I +   S Q ID+ NI++AT  A+  A+ NL   P   LID   +P   P  
Sbjct: 137 EIKEQAIAIGVGIVSPQVIDEINIYQATKRAMLDAIANLACTPEHLLIDAMKLPT--PIP 194

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   K+YP YGF+ H+GY T +H Q I+  G
Sbjct: 195 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGKEYPAYGFEQHMGYGTKQHLQAIEMYG 254

Query: 193 PSCIHRLTFRPLRNL 207
               HR TF P++++
Sbjct: 255 VLEEHRKTFAPIKDM 269


>gi|225630956|ref|YP_002727747.1| ribonuclease HII [Wolbachia sp. wRi]
 gi|254808008|sp|C0R4W4|RNH2_WOLWR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|225592937|gb|ACN95956.1| ribonuclease HII [Wolbachia sp. wRi]
          Length = 198

 Score =  250 bits (640), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 86/198 (43%), Positives = 121/198 (61%), Gaps = 6/198 (3%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKR 68
           P F LE  +       +AG+DEVGRG LAGPV+ AA++  D N I  GINDSKK++ + R
Sbjct: 4   PDFTLENKLS----GVIAGVDEVGRGPLAGPVISAAVVFIDRNTIIDGINDSKKLTPQCR 59

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           + LYEKI S A   I  AS + I+ +NI +AT  ++  A+ +L +     L+DG   PE 
Sbjct: 60  QVLYEKIISVAKFGIGMASVEEINSYNILQATKLSMKRALIDLDLELDYVLVDGNQPPE- 118

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           +  Q  +++ GD++S SIAAASI+AKVTRDRLM+  H K+P+Y +  + GY T +H   I
Sbjct: 119 VKWQVKSIVNGDNLSTSIAAASIVAKVTRDRLMQELHNKHPEYNWYKNKGYGTKEHLNAI 178

Query: 189 KEKGPSCIHRLTFRPLRN 206
              G +  HR  F P+  
Sbjct: 179 GLYGITEHHRRNFAPISR 196


>gi|292492827|ref|YP_003528266.1| ribonuclease H [Nitrosococcus halophilus Nc4]
 gi|291581422|gb|ADE15879.1| Ribonuclease H [Nitrosococcus halophilus Nc4]
          Length = 200

 Score =  250 bits (640), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 81/193 (41%), Positives = 117/193 (60%), Gaps = 2/193 (1%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76
            ++ +    +AG+DEVGRG LAGPVV AA+ILDP +   G+ DSK+++   RE L   I 
Sbjct: 6   TLQREVQGWIAGVDEVGRGPLAGPVVAAAVILDPGHPIAGVKDSKQLTPLARERLAALIQ 65

Query: 77  SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135
           + A+  ++  A  + I++ NI  A+L A+  AV  L   P   L+DG+  P    C   A
Sbjct: 66  AQAVAWALGRAEVEEIEQLNIFWASLLAMERAVAALSEAPSLVLVDGKHCPPA-ACPVRA 124

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           V+KGD   ++IAAASI+AKV RD  M    K+YP YGF +H GYPT  H   +++ GP  
Sbjct: 125 VVKGDQKVMAIAAASIVAKVARDAEMVALEKRYPGYGFGTHKGYPTRAHLAALEKLGPCP 184

Query: 196 IHRLTFRPLRNLS 208
           IHR +FR ++ ++
Sbjct: 185 IHRRSFRAVKEIA 197


>gi|255010102|ref|ZP_05282228.1| ribonuclease HII [Bacteroides fragilis 3_1_12]
 gi|313147897|ref|ZP_07810090.1| ribonuclease HII [Bacteroides fragilis 3_1_12]
 gi|313136664|gb|EFR54024.1| ribonuclease HII [Bacteroides fragilis 3_1_12]
          Length = 201

 Score =  250 bits (640), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 79/179 (44%), Positives = 105/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK++S K+R  L E I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFENELLNDSKQLSEKQRYALREVIEREAIAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + IDK NI  A+  A++ AV+ L+  P+  LIDG    +        V+KGD   LS
Sbjct: 73  VSPEEIDKINILNASFLAMHRAVDGLKTRPQHLLIDGNRFRKYPDIPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H+++P YG+D + GYPT KH+  I E G +  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNGLHQEFPCYGWDHNKGYPTKKHRAAIAENGVTPYHRMTFNLL 191


>gi|225874361|ref|YP_002755820.1| ribonuclease HII [Acidobacterium capsulatum ATCC 51196]
 gi|225794400|gb|ACO34490.1| ribonuclease HII [Acidobacterium capsulatum ATCC 51196]
          Length = 236

 Score =  250 bits (640), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 86/193 (44%), Positives = 121/193 (62%), Gaps = 3/193 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E   R++    +AG+DEVGRGAL GPVV AA+IL       G+ DSK++    RE L 
Sbjct: 28  RYERQARQQGATAIAGVDEVGRGALFGPVVAAAVILPSRIRLEGLRDSKQLRVSDRERLA 87

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            ++ + AI ++I+    + ID+ NI++AT  A+  AVE LQ  P   LID   I  D PC
Sbjct: 88  TEVHACAIAVAIAEVDVETIDRINIYQATRLAMLRAVELLQPEPDHLLIDAMRI--DHPC 145

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++I GDS+SLSIAAAS++AKV RDRL+   H  YP+YG D+H GY T +H+  + + 
Sbjct: 146 AQTSIIYGDSLSLSIAAASVVAKVYRDRLVCELHALYPEYGLDAHKGYGTPRHKAALLQY 205

Query: 192 GPSCIHRLTFRPL 204
           GP+ +HR +F P+
Sbjct: 206 GPTPLHRKSFAPV 218


>gi|262369617|ref|ZP_06062945.1| ribonuclease HII [Acinetobacter johnsonii SH046]
 gi|262315685|gb|EEY96724.1| ribonuclease HII [Acinetobacter johnsonii SH046]
          Length = 192

 Score =  250 bits (640), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 82/183 (44%), Positives = 113/183 (61%), Gaps = 1/183 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           +AG DE GRG L G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I   A+    +
Sbjct: 3   IAGADEAGRGPLVGSVVAAAVILDPNNPIQGLNDSKKLTEKKREKLFVEIQEKALAWAIA 62

Query: 86  ASHQYI-DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            +     D+ NI +A+L A+  AVE L + P   L+DG  IP+ L     A++ GD++  
Sbjct: 63  EASAAEIDEINILQASLLAMRRAVEQLTIQPEHVLVDGNKIPQGLSMSCEAIVGGDALHA 122

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M    +KYP +GF  H GYPT  H + I E G    HR +F P+
Sbjct: 123 EISAASILAKVTRDHQMIEMDRKYPQFGFAKHKGYPTKAHFEAIAEHGVIDEHRRSFGPV 182

Query: 205 RNL 207
           + +
Sbjct: 183 KKV 185


>gi|229086390|ref|ZP_04218566.1| Ribonuclease [Bacillus cereus Rock3-44]
 gi|228696906|gb|EEL49715.1| Ribonuclease [Bacillus cereus Rock3-44]
          Length = 255

 Score =  250 bits (640), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 91/195 (46%), Positives = 128/195 (65%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y+
Sbjct: 62  YEKALREKGLAYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I + AI I +   S Q ID+ NI++AT  A+  A+ NL   P   LID   +P   P  
Sbjct: 122 EINAKAIAIGVGIISPQVIDEINIYQATKRAMLDAIANLSCTPEHLLIDAMKLPS--PIP 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             +++KGD+ S+SI+AASIIAKVTRD +M+   K++P+YGF+ H+GY T +H Q I+  G
Sbjct: 180 QTSIVKGDTKSISISAASIIAKVTRDCMMKELGKEHPEYGFEQHMGYGTKQHLQAIETYG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR TF P++++
Sbjct: 240 VLEEHRKTFAPIKDM 254


>gi|312796258|ref|YP_004029180.1| ribonuclease HII [Burkholderia rhizoxinica HKI 454]
 gi|312168033|emb|CBW75036.1| Ribonuclease HII (EC 3.1.26.4) [Burkholderia rhizoxinica HKI 454]
          Length = 232

 Score =  250 bits (640), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 84/184 (45%), Positives = 118/184 (64%), Gaps = 3/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-IS 82
            V G+DE GRG LAGPVV AA+ILDP      G++DSK +S   RE+L+++I   ++   
Sbjct: 30  LVCGVDEAGRGPLAGPVVAAAVILDPAAPRIRGLDDSKALSPATREKLFDRIVERSLAYC 89

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           ++SAS + ID  NI  AT+ A+  AV+ L + P    +DG   P  L  ++ AVI GD++
Sbjct: 90  VASASVEEIDTLNILHATMLAMQRAVQGLALTPALVKVDGNRCPV-LSVRSEAVIGGDAL 148

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             SI+AASI+AKVTRDR+M   H ++P YGFD+HVGY T +H   ++  GP   HR +F 
Sbjct: 149 VPSISAASILAKVTRDRMMHALHDEFPHYGFDAHVGYGTPRHLAALRIHGPCVHHRRSFA 208

Query: 203 PLRN 206
           P+R 
Sbjct: 209 PVRK 212


>gi|302344951|ref|YP_003813304.1| ribonuclease HII [Prevotella melaninogenica ATCC 25845]
 gi|302149166|gb|ADK95428.1| ribonuclease HII [Prevotella melaninogenica ATCC 25845]
          Length = 200

 Score =  250 bits (640), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 75/179 (41%), Positives = 108/179 (60%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL P+     +NDSKK++ KKR  L E+I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPPDYQNELLNDSKKLTAKKRYALREEIERDAIAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + IDK NI  A+  A++ A++ L+V P + ++DG          +  ++KGD   LS
Sbjct: 73  VTPEEIDKINILNASFLAMHRALDQLKVRPEAVIVDGNRFKPYQDLPSTTIVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M    ++YP Y + S++GYPT KH+Q I+E G +  HR ++  L
Sbjct: 133 IAAASILAKTYRDDYMLSLAEEYPQYDWQSNMGYPTKKHRQAIREHGITPYHRKSYNLL 191


>gi|124007381|ref|ZP_01692088.1| ribonuclease HII [Microscilla marina ATCC 23134]
 gi|123987214|gb|EAY26954.1| ribonuclease HII [Microscilla marina ATCC 23134]
          Length = 195

 Score =  250 bits (640), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 79/181 (43%), Positives = 116/181 (64%), Gaps = 1/181 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DEVGRG LAGPVV AA+IL PN     + DSKK++ K RE+L + I   AI  +++ 
Sbjct: 13  AGVDEVGRGCLAGPVVAAAVILPPNYKNELLMDSKKLNKKTREKLRKTIEEEAISWAVAE 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           ASH  ID+ NI  A+  A++ A+E L+  P   LIDG             ++KGD+  LS
Sbjct: 73  ASHTEIDEINILNASFLAMHRAIEQLEPEPELLLIDGNRFNPYKFVAYQCIVKGDNKFLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           IAAASI+AK  RD LM     ++P+Y ++++VGYPT KH+  I++ G +  HR++F+ ++
Sbjct: 133 IAAASILAKTYRDDLMEKLAVEHPEYDWENNVGYPTKKHRAAIEQHGATPWHRMSFKLIK 192

Query: 206 N 206
           +
Sbjct: 193 D 193


>gi|228928885|ref|ZP_04091917.1| Ribonuclease [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|229092879|ref|ZP_04224013.1| Ribonuclease [Bacillus cereus Rock3-42]
 gi|228690501|gb|EEL44284.1| Ribonuclease [Bacillus cereus Rock3-42]
 gi|228830692|gb|EEM76297.1| Ribonuclease [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 257

 Score =  250 bits (640), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 93/195 (47%), Positives = 128/195 (65%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S  KRE  Y+
Sbjct: 62  YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYD 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I + AI I +   S Q ID+ NI++AT  A+  A+ NL   P   LID   +P   P  
Sbjct: 122 EIKAKAIAIGVGIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPT--PIP 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G
Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 240 VLEEHRKSFAPIKDM 254


>gi|118594900|ref|ZP_01552247.1| ribonuclease HII [Methylophilales bacterium HTCC2181]
 gi|118440678|gb|EAV47305.1| ribonuclease HII [Methylophilales bacterium HTCC2181]
          Length = 188

 Score =  250 bits (640), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 84/188 (44%), Positives = 118/188 (62%), Gaps = 1/188 (0%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81
           M  + G+DE GRG LAGPV  AA+ILDP+    G+ DSKK+S K+   +Y  I   A  +
Sbjct: 1   MIMICGVDEAGRGPLAGPVFAAAVILDPSRPIPGLKDSKKLSPKQLLSVYLDIMKCAWEV 60

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           S ++A+ Q ID+ NI +A+L A+  A+  L  IP   LIDG+  P+    +  AV+KGD+
Sbjct: 61  SSATATPQEIDQINILQASLLAMKRAIYQLSNIPDRILIDGQHCPDIQSMEMKAVVKGDA 120

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
               I+AASIIAKV RD+ M     ++P+Y F  H GYPT +H ++I+E G S +HR TF
Sbjct: 121 KHQEISAASIIAKVERDKYMLELDHQFPEYNFKQHKGYPTKEHIRLIREFGVSPVHRKTF 180

Query: 202 RPLRNLSV 209
           RP+  L +
Sbjct: 181 RPVSELLI 188


>gi|97182194|sp|Q5PBG2|RNH2_ANAMM RecName: Full=Ribonuclease HII; Short=RNase HII
          Length = 243

 Score =  250 bits (640), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 91/205 (44%), Positives = 125/205 (60%), Gaps = 2/205 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKI 63
           +   P F +E  +R   +  + G+DEVG GA+AGPVV AA+ L     +    I DSK +
Sbjct: 5   MNRMPSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKAL 64

Query: 64  SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
           S KKREEL+ KIT+ A   +  A  + I++HNI  A+  ++  A++NL V     L+DG 
Sbjct: 65  SSKKREELFCKITAHAKYGVGFARVREIEQHNILVASHISMKRALQNLGVKADLVLVDGS 124

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
             P  LP     ++KGDSIS SIAAASIIAKVTRDR MR  H++YP+Y ++ + GY T  
Sbjct: 125 RAPAGLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKA 184

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLS 208
           H Q +K  G +  HR TF P++ LS
Sbjct: 185 HMQSLKLYGKTAQHRSTFAPVKQLS 209


>gi|194099971|ref|YP_002003110.1| ribonuclease HII [Neisseria gonorrhoeae NCCP11945]
 gi|254494667|ref|ZP_05107838.1| ribonuclease HII [Neisseria gonorrhoeae 1291]
 gi|268593829|ref|ZP_06127996.1| ribonuclease HII [Neisseria gonorrhoeae 35/02]
 gi|268597728|ref|ZP_06131895.1| ribonuclease HII [Neisseria gonorrhoeae FA19]
 gi|268599975|ref|ZP_06134142.1| ribonuclease HII [Neisseria gonorrhoeae MS11]
 gi|268602313|ref|ZP_06136480.1| ribonuclease HII [Neisseria gonorrhoeae PID18]
 gi|268604575|ref|ZP_06138742.1| ribonuclease HII [Neisseria gonorrhoeae PID1]
 gi|268683300|ref|ZP_06150162.1| ribonuclease HII [Neisseria gonorrhoeae SK-92-679]
 gi|268687461|ref|ZP_06154323.1| ribonuclease HII [Neisseria gonorrhoeae SK-93-1035]
 gi|291042833|ref|ZP_06568574.1| ribonuclease HII [Neisseria gonorrhoeae DGI2]
 gi|193935261|gb|ACF31085.1| RnhB [Neisseria gonorrhoeae NCCP11945]
 gi|226513707|gb|EEH63052.1| ribonuclease HII [Neisseria gonorrhoeae 1291]
 gi|268547218|gb|EEZ42636.1| ribonuclease HII [Neisseria gonorrhoeae 35/02]
 gi|268551516|gb|EEZ46535.1| ribonuclease HII [Neisseria gonorrhoeae FA19]
 gi|268584106|gb|EEZ48782.1| ribonuclease HII [Neisseria gonorrhoeae MS11]
 gi|268586444|gb|EEZ51120.1| ribonuclease HII [Neisseria gonorrhoeae PID18]
 gi|268588706|gb|EEZ53382.1| ribonuclease HII [Neisseria gonorrhoeae PID1]
 gi|268623584|gb|EEZ55984.1| ribonuclease HII [Neisseria gonorrhoeae SK-92-679]
 gi|268627745|gb|EEZ60145.1| ribonuclease HII [Neisseria gonorrhoeae SK-93-1035]
 gi|291013267|gb|EFE05233.1| ribonuclease HII [Neisseria gonorrhoeae DGI2]
 gi|317165422|gb|ADV08963.1| ribonuclease HII [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 212

 Score =  250 bits (639), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 82/205 (40%), Positives = 112/205 (54%), Gaps = 3/205 (1%)

Query: 6   IPERPHFELEAMVREKNMWPV--AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           +P    F     +   N+  +  AG+DE GRG L G V  AA+IL       G+ DSKK+
Sbjct: 1   MPSETIFRRHRTIPTGNIMHILTAGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKL 60

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           S KKR+ L E I   A+   +++++ + I   NI  AT+ A+  AV  L   P    IDG
Sbjct: 61  SEKKRDALAEMIKEQAVAWHVAASTPEEIASLNILHATMLAMKRAVYGLAARPEKIFIDG 120

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
             IPE L   A AV+KGDS  + I+AAS++AK  RD  M    ++ P YGFD H GY T 
Sbjct: 121 NRIPEHLGIPAEAVVKGDSKIIEISAASVLAKTARDAEMYALAQRRPQYGFDKHKGYGTK 180

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207
           +H + +K+ G    HR  F P+RNL
Sbjct: 181 QHLEALKQYGVLPEHRRDFAPVRNL 205


>gi|42782929|ref|NP_980176.1| ribonuclease HII [Bacillus cereus ATCC 10987]
 gi|222097282|ref|YP_002531339.1| ribonuclease hii [Bacillus cereus Q1]
 gi|73917595|sp|Q732N3|RNH2_BACC1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807967|sp|B9IVC6|RNH2_BACCQ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|42738856|gb|AAS42784.1| ribonuclease HII [Bacillus cereus ATCC 10987]
 gi|221241340|gb|ACM14050.1| ribonuclease HII [Bacillus cereus Q1]
          Length = 257

 Score =  250 bits (639), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 93/195 (47%), Positives = 129/195 (66%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y+
Sbjct: 62  YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I + AI I +   S Q ID+ NI++AT  A+  AV NL   P+  LID   +P   P  
Sbjct: 122 EIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPT--PIP 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G
Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 240 ILEEHRKSFAPIKDM 254


>gi|47570338|ref|ZP_00240983.1| ribonuclease HII [Bacillus cereus G9241]
 gi|47553003|gb|EAL11409.1| ribonuclease HII [Bacillus cereus G9241]
 gi|324327734|gb|ADY22994.1| ribonuclease HII [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 257

 Score =  250 bits (639), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 93/195 (47%), Positives = 129/195 (66%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y+
Sbjct: 62  YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I + AI I +   S Q ID+ NI++AT  A+  AV NL   P+  LID   +P   P  
Sbjct: 122 EIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPT--PIP 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G
Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 240 ILEEHRKSFAPIKDM 254


>gi|323489566|ref|ZP_08094793.1| ribonuclease HII [Planococcus donghaensis MPA1U2]
 gi|323396697|gb|EGA89516.1| ribonuclease HII [Planococcus donghaensis MPA1U2]
          Length = 259

 Score =  250 bits (639), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 85/198 (42%), Positives = 118/198 (59%), Gaps = 4/198 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREE 70
              +   R++++  VAGIDE GRG LAGPVV AA+IL  +     G++DSK++S  KR+E
Sbjct: 57  LAFDDSFRKESVDLVAGIDEAGRGPLAGPVVTAAVILPEDCSSLIGLDDSKQLSKAKRDE 116

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L   I   AI  ++   S + ID+ NI++AT  ++  A   L   P   L D   +  +L
Sbjct: 117 LAITIKKFAISYAVHVQSPEEIDRLNIYQATKSSMTEAARALTPAPDIVLADAMML--EL 174

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P    ++IKGD+ SLSIAAASI+AK  RD LM     +YP YGF+ H GY T +H   ++
Sbjct: 175 PMTCESIIKGDAKSLSIAAASILAKTGRDALMTEYAVQYPQYGFEKHAGYGTKEHVAALQ 234

Query: 190 EKGPSCIHRLTFRPLRNL 207
           E GP  IHR TF P++ L
Sbjct: 235 EYGPCEIHRKTFEPIKTL 252


>gi|223044238|ref|ZP_03614275.1| ribonuclease HII (RNase HII) [Staphylococcus capitis SK14]
 gi|222442388|gb|EEE48496.1| ribonuclease HII (RNase HII) [Staphylococcus capitis SK14]
          Length = 256

 Score =  250 bits (639), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 82/198 (41%), Positives = 120/198 (60%), Gaps = 4/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           H+E E ++   N   + GIDEVGRG LAGPVV  A+IL+  +   G+NDSKK+  K+R  
Sbjct: 60  HYENE-ILNHDNEALICGIDEVGRGPLAGPVVACAVILNKGHHYLGLNDSKKVPAKQRLI 118

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L E++ ++    +   A+ Q ID  NI+KAT  A+  A+  L + P   LID   +  D+
Sbjct: 119 LNEELKNNVTSYAYGIATPQEIDDLNIYKATQVAMQRAINQLSIQPTHLLIDAMKLDNDI 178

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P    ++IKGD+ S+SIAAASI+AK  RD  M+     YP+YGF+ +VGY T +H + I 
Sbjct: 179 P--QISIIKGDAKSVSIAAASIMAKEYRDNYMKELANDYPNYGFEKNVGYGTKQHLEAID 236

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G    HR +F P++++
Sbjct: 237 TFGVINEHRKSFEPIKSM 254


>gi|329888215|ref|ZP_08266813.1| ribonuclease HII family protein [Brevundimonas diminuta ATCC 11568]
 gi|328846771|gb|EGF96333.1| ribonuclease HII family protein [Brevundimonas diminuta ATCC 11568]
          Length = 199

 Score =  250 bits (639), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 90/195 (46%), Positives = 115/195 (58%), Gaps = 2/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
           LE   R      V G+DE GRG  AGPV  AA+IL+P+++P GI+DSK ++ K+R  L  
Sbjct: 2   LELEARATWNGHVCGVDEAGRGPWAGPVSAAAVILNPDDLPPGIDDSKALTEKRRAALEP 61

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I S A+   +  AS + ID+ NI  AT  A+  AVE L   P  AL+DG      LPC 
Sbjct: 62  LIKSRALAWGVGFASVEEIDELNILHATGLAMRRAVEALAHAPVHALVDGN-YRFKLPCA 120

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              V+KGDS SLSIAAASI+AK  RDRLM      YP YGF SH GY    HQ+ ++  G
Sbjct: 121 VTPVVKGDSRSLSIAAASILAKTARDRLMIEMDATYPGYGFASHKGYNAPIHQKALQTLG 180

Query: 193 PSCIHRLTFRPLRNL 207
           P   HR ++ P++ L
Sbjct: 181 PCPEHRRSWAPIKAL 195


>gi|114567000|ref|YP_754154.1| ribonuclease H [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|122318000|sp|Q0AWX1|RNH2_SYNWW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|114337935|gb|ABI68783.1| RNase HII [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 255

 Score =  250 bits (639), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 85/198 (42%), Positives = 120/198 (60%), Gaps = 2/198 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E          +AGIDE GRG +AGPV+ AA+IL  +    GINDSKK++  KR +L 
Sbjct: 47  RYEYEAYNNGFRYIAGIDEAGRGPIAGPVMAAAVILSRDFFCPGINDSKKLTALKRSKLA 106

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I   AI  S+++    Y+DK NI  AT +A+  AV+NL   P   LID   +P D+  
Sbjct: 107 AEIKKQAISWSVAAVFPSYLDKVNILNATREAMLLAVKNLSPRPEFLLIDAVQLP-DIDI 165

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           + + +IKGDS+S+SIAAASI+AKV RDR+M      YP YGF  H GY T +H Q +   
Sbjct: 166 KQYPLIKGDSLSVSIAAASILAKVERDRVMEAFDSLYPGYGFSRHKGYATREHLQSLLRL 225

Query: 192 GPSCIHRLTFRPLRNLSV 209
           G   +HR++F P++++ +
Sbjct: 226 GTCALHRVSFEPVKSMVL 243


>gi|121634067|ref|YP_974312.1| ribonuclease HII [Neisseria meningitidis FAM18]
 gi|166226632|sp|A1KRM4|RNH2_NEIMF RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|120865773|emb|CAM09502.1| ribonuclease HII [Neisseria meningitidis FAM18]
          Length = 194

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/182 (43%), Positives = 108/182 (59%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG L G V  AA+IL       G+ DSKK+S KKR+ L E I + A+   +++
Sbjct: 6   AGVDEAGRGPLVGSVFAAAVILPEIFDLPGLTDSKKLSEKKRDALAEMIKNQAVAWHVAA 65

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A  + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  + 
Sbjct: 66  AGPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AAS++AK  RD  M    +++P YGFD H GY T +H + +++ G    HR  F P+R
Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALEKYGVLPEHRRDFAPVR 185

Query: 206 NL 207
           NL
Sbjct: 186 NL 187


>gi|320120511|gb|EFE28779.2| ribonuclease HII [Filifactor alocis ATCC 35896]
          Length = 256

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/188 (42%), Positives = 114/188 (60%), Gaps = 1/188 (0%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E     K +  V G+DE GRG LAGPVV A +I+  +++  G+NDSKKI    REELY+K
Sbjct: 66  EQDWNSKGILLVGGVDEAGRGPLAGPVVAACVIMKSDSLILGMNDSKKIKETVREELYDK 125

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           +   +I   I  AS + ID++NI +AT  A+  A++ ++ +P   L+DG     +   + 
Sbjct: 126 VIQDSISFGIGIASSEEIDRYNILQATFLAMKRAMQEMKQVPDLVLVDGNQEISNCSIRQ 185

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             VI GDSI  SIA ASI+AKV RDR+MR   + YP++ F S+ GY T+ H   ++  G 
Sbjct: 186 ETVIHGDSICYSIACASILAKVYRDRIMRDYDRIYPEFDFLSNKGYGTSHHYDALRTYGV 245

Query: 194 SCIHRLTF 201
           + IHR +F
Sbjct: 246 TPIHRKSF 253


>gi|315150451|gb|EFT94467.1| ribonuclease HII [Enterococcus faecalis TX0012]
          Length = 255

 Score =  249 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 91/196 (46%), Positives = 126/196 (64%), Gaps = 3/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E    +K    +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S KKRE LY
Sbjct: 61  QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY 120

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I   A+ I +  A    ID+ NI++AT  A+  A+++L   P   LID   +  D+P 
Sbjct: 121 NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFTPDYLLIDAMQL--DVPQ 178

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASIIAKVTRDRLM    + YP YGF ++ GY T +H   +++ 
Sbjct: 179 PQESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKY 238

Query: 192 GPSCIHRLTFRPLRNL 207
           G + IHR TF P++++
Sbjct: 239 GVTPIHRRTFAPIKDM 254


>gi|302386482|ref|YP_003822304.1| Ribonuclease H [Clostridium saccharolyticum WM1]
 gi|302197110|gb|ADL04681.1| Ribonuclease H [Clostridium saccharolyticum WM1]
          Length = 213

 Score =  249 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 85/195 (43%), Positives = 116/195 (59%), Gaps = 6/195 (3%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E    ++    V GIDE GRG LAGPVV  A+IL  +     +NDSKK+S K+RE L+E
Sbjct: 22  YERQYEDQ--VLVCGIDEAGRGPLAGPVVAGAVILPRDCEILFLNDSKKLSEKRREALFE 79

Query: 74  KITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   A   ++       ID+ NI +AT +A+  AV  L++ P   L D  +IP  +   
Sbjct: 80  EIMEKASAFAVGVVGADRIDEINILQATYEAMRLAVAKLEIEPNVFLNDAVTIP-GIAAS 138

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              +IKGD  S+SIAAASI+AKVTRD +M    K +P+YGF  H GY TA H + +KE G
Sbjct: 139 QVPIIKGDGKSVSIAAASIMAKVTRDHMMEEYDKLFPEYGFSRHKGYGTAVHMKALKEFG 198

Query: 193 PSCIHRLTFRPLRNL 207
           P  IHR +F  ++N+
Sbjct: 199 PCPIHRRSF--IKNI 211


>gi|255004020|ref|ZP_05278821.1| ribonuclease HII (rnhB) [Anaplasma marginale str. Virginia]
          Length = 239

 Score =  249 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 91/205 (44%), Positives = 125/205 (60%), Gaps = 2/205 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKI 63
           +   P F +E  +R   +  + G+DEVG GA+AGPVV AA+ L     +    I DSK +
Sbjct: 1   MNRMPSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKAL 60

Query: 64  SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
           S KKREEL+ KIT+ A   +  A  + I++HNI  A+  ++  A++NL V     L+DG 
Sbjct: 61  SSKKREELFCKITAHARYGVGFARVREIEQHNILVASHISMKRALQNLGVKADLVLVDGS 120

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
             P  LP     ++KGDSIS SIAAASIIAKVTRDR MR  H++YP+Y ++ + GY T  
Sbjct: 121 RAPAGLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKA 180

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLS 208
           H Q +K  G +  HR TF P++ LS
Sbjct: 181 HMQSLKLYGKTAQHRSTFAPVKQLS 205


>gi|229006113|ref|ZP_04163801.1| Ribonuclease HII [Bacillus mycoides Rock1-4]
 gi|228755189|gb|EEM04546.1| Ribonuclease HII [Bacillus mycoides Rock1-4]
          Length = 257

 Score =  249 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 94/195 (48%), Positives = 127/195 (65%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y+
Sbjct: 62  YEKALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   AI I +   S Q ID+ NI++AT  A+  A+ NL   P   LID   +P   P  
Sbjct: 122 EIKEQAIAIGVGIVSPQVIDEINIYQATKRAMLDAIANLACTPEHLLIDAMKLPT--PIP 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   K+YP YGF+ H+GY T +H Q I+  G
Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGKEYPAYGFEQHMGYGTKQHLQAIEMYG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR TF P++++
Sbjct: 240 VLEEHRKTFAPIKDM 254


>gi|220915421|ref|YP_002490725.1| Ribonuclease H [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953275|gb|ACL63659.1| Ribonuclease H [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 283

 Score =  249 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/195 (41%), Positives = 116/195 (59%), Gaps = 2/195 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              EA + E+ +  VAG+DE G   LAGPVV  A +L  +  P GI+DSK++   +RE L
Sbjct: 66  LRYEAELWERGLVRVAGVDEAGMAPLAGPVVAGACVLPLDYRPRGIDDSKQLDRAERERL 125

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            E I  +A+  +++ A  + ID+ NI+ A + A+  AV+ L   P   L+D R +P DLP
Sbjct: 126 AEDIKRNAVCWAVARADVEEIDRLNIYWAGMLALRRAVDGLSARPEHLLVDARKLP-DLP 184

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                ++ GD++SL+IAAASI+AK  RD LM      +P YGF  H GYPTA+H + +  
Sbjct: 185 FPQTPIVHGDALSLTIAAASILAKTARDALMAELDLVHPGYGFARHKGYPTAEHFEALGR 244

Query: 191 KGPSCIHRLTFRPLR 205
            G   IHR +F P+R
Sbjct: 245 LGACPIHRRSFTPVR 259


>gi|238763964|ref|ZP_04624920.1| Ribonuclease HII [Yersinia kristensenii ATCC 33638]
 gi|238697781|gb|EEP90542.1| Ribonuclease HII [Yersinia kristensenii ATCC 33638]
          Length = 183

 Score =  249 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 82/180 (45%), Positives = 109/180 (60%), Gaps = 2/180 (1%)

Query: 29  IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSAS 87
           +DEVGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++I   A+  S+  A 
Sbjct: 1   MDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEIIDKALSWSLGRAE 60

Query: 88  HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147
            + ID  NI  AT+ A+  AV  L + P   LIDG   P+ L   + AV+KGDS    I+
Sbjct: 61  PEEIDHLNILHATMLAMQRAVAGLHIAPDYVLIDGNRCPK-LAMPSLAVVKGDSRVAEIS 119

Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           AASI+AKVTRDR M     ++P YGF  H GYPTA H + +   G +  HR +F P++ +
Sbjct: 120 AASILAKVTRDREMTELDLQFPGYGFAQHKGYPTAVHLEKLAALGATEHHRRSFGPVKRV 179


>gi|254247897|ref|ZP_04941218.1| Ribonuclease HII [Burkholderia cenocepacia PC184]
 gi|124872673|gb|EAY64389.1| Ribonuclease HII [Burkholderia cenocepacia PC184]
          Length = 214

 Score =  249 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 89/182 (48%), Positives = 120/182 (65%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83
            V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKR+ LY+ I + +    +
Sbjct: 27  IVCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLDDSKVLSAKKRDALYDLIVTRSHAYCV 86

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS   ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  +A A++ GD++ 
Sbjct: 87  ASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LSVRAEAIVSGDALV 145

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+++P YGF+ H GY TAKH   ++E GP   HR +F P
Sbjct: 146 PSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAHRRSFAP 205

Query: 204 LR 205
           +R
Sbjct: 206 VR 207


>gi|288801638|ref|ZP_06407080.1| ribonuclease HII [Prevotella melaninogenica D18]
 gi|288335680|gb|EFC74113.1| ribonuclease HII [Prevotella melaninogenica D18]
          Length = 200

 Score =  249 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 75/179 (41%), Positives = 106/179 (59%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL P+     +NDSKK++ KKR  L E+I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPPDYQNELLNDSKKLTAKKRYALREEIERDAIAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + IDK NI  A+  A++ A++ L V P + ++DG          +  ++KGD   LS
Sbjct: 73  VTPEEIDKINILNASFLAMHRALDQLSVRPEAVIVDGNRFKPYQDLPSTTIVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M    ++YP Y + S++GYPT KH+Q I E G +  HR ++  L
Sbjct: 133 IAAASILAKTYRDDYMLSLAEEYPQYDWQSNMGYPTKKHRQAILEYGITPYHRKSYNLL 191


>gi|257439821|ref|ZP_05615576.1| ribonuclease HII [Faecalibacterium prausnitzii A2-165]
 gi|257197730|gb|EEU96014.1| ribonuclease HII [Faecalibacterium prausnitzii A2-165]
          Length = 214

 Score =  249 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 86/193 (44%), Positives = 117/193 (60%), Gaps = 2/193 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P +E +A +R +     AG+DE GRG L GPVVVAA ILDP    +GINDSKK++ KKRE
Sbjct: 12  PLYEYDAAIRAQ-YGFFAGVDEAGRGPLCGPVVVAACILDPEKPVYGINDSKKLTEKKRE 70

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            L+++I   A+   I     + ID+ NI  AT+  +  A E L ++P   L+DG  +P  
Sbjct: 71  ALFDEICDKALAYKIVFVGPEIIDRDNILNATMSGMKQAAEGLDIVPNLVLVDGNRVPAA 130

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L   A  V+KGD+ S SI AASI+AKV+RDR M    K+YP Y    H GYPT  H ++I
Sbjct: 131 LEIPAQPVVKGDATSASIGAASILAKVSRDRYMMELDKQYPQYQLAKHKGYPTKLHYELI 190

Query: 189 KEKGPSCIHRLTF 201
           ++ G    +R +F
Sbjct: 191 EQYGIQPFYRRSF 203


>gi|196228537|ref|ZP_03127404.1| Ribonuclease H [Chthoniobacter flavus Ellin428]
 gi|196227940|gb|EDY22443.1| Ribonuclease H [Chthoniobacter flavus Ellin428]
          Length = 202

 Score =  249 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 82/199 (41%), Positives = 116/199 (58%), Gaps = 3/199 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  +R      VAGIDEVGRG LAGPVV AA+IL        +NDSKK+S ++RE++Y
Sbjct: 2   RHERKLRADGCVLVAGIDEVGRGPLAGPVVAAAVILPEKFRHKTLNDSKKLSAEQREKIY 61

Query: 73  EKI--TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            ++    +   ++     + ID+ NI +A+ +A+  +V  L   P  ALIDG  +    P
Sbjct: 62  AELTTRENVHWTVCVVEVEEIDRINILRASHEAMRRSVTALATKPDHALIDGLPVRP-FP 120

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               A++ GD++S SIAAAS+IAKVTRDR+M    +++P Y F  H GY T  H   +KE
Sbjct: 121 IPHTALVGGDALSFSIAAASVIAKVTRDRIMVEMDQRHPGYAFGQHKGYGTELHLARLKE 180

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            GP  IHR +F P+    +
Sbjct: 181 HGPCPIHRRSFLPVEQAEL 199


>gi|107028815|ref|YP_625910.1| ribonuclease HII [Burkholderia cenocepacia AU 1054]
 gi|116690026|ref|YP_835649.1| ribonuclease HII [Burkholderia cenocepacia HI2424]
 gi|122977720|sp|Q1BHG8|RNH2_BURCA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166225172|sp|A0K8C9|RNH2_BURCH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|105897979|gb|ABF80937.1| Ribonuclease H [Burkholderia cenocepacia AU 1054]
 gi|116648115|gb|ABK08756.1| Ribonuclease H [Burkholderia cenocepacia HI2424]
          Length = 214

 Score =  249 bits (637), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 89/182 (48%), Positives = 120/182 (65%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83
            V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKR+ LY+ I + +    +
Sbjct: 27  IVCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLDDSKVLSAKKRDALYDLIVTRSHAYCV 86

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS   ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  +A A++ GD++ 
Sbjct: 87  ASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LSVRAEAIVSGDALV 145

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+++P YGF+ H GY TAKH   ++E GP   HR +F P
Sbjct: 146 PSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAHRRSFAP 205

Query: 204 LR 205
           +R
Sbjct: 206 VR 207


>gi|257085098|ref|ZP_05579459.1| ribonuclease HII [Enterococcus faecalis Fly1]
 gi|256993128|gb|EEU80430.1| ribonuclease HII [Enterococcus faecalis Fly1]
          Length = 255

 Score =  249 bits (637), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 91/196 (46%), Positives = 126/196 (64%), Gaps = 3/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E    +K    +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S KKRE LY
Sbjct: 61  QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY 120

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I   A+ I +  A    ID+ NI++AT  A+  A+++L   P   LID   +  D+P 
Sbjct: 121 NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFTPDYLLIDAMQL--DVPQ 178

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASIIAKVTRDRLM    + YP YGF ++ GY T +H   +++ 
Sbjct: 179 PQESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKY 238

Query: 192 GPSCIHRLTFRPLRNL 207
           G + IHR TF P++++
Sbjct: 239 GVTPIHRRTFAPIKDM 254


>gi|170733361|ref|YP_001765308.1| ribonuclease HII [Burkholderia cenocepacia MC0-3]
 gi|238688549|sp|B1JUD6|RNH2_BURCC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|169816603|gb|ACA91186.1| Ribonuclease H [Burkholderia cenocepacia MC0-3]
          Length = 214

 Score =  249 bits (637), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 89/182 (48%), Positives = 120/182 (65%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83
            V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKR+ LY+ I + +    +
Sbjct: 27  IVCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLDDSKVLSAKKRDALYDLIVTRSHAYCV 86

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS   ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  +A A++ GD++ 
Sbjct: 87  ASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LSVRAEAIVSGDALV 145

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+++P YGF+ H GY TAKH   ++E GP   HR +F P
Sbjct: 146 PSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAHRRSFAP 205

Query: 204 LR 205
           +R
Sbjct: 206 VR 207


>gi|325294887|ref|YP_004281401.1| ribonuclease H [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065335|gb|ADY73342.1| Ribonuclease H [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 236

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/195 (42%), Positives = 112/195 (57%), Gaps = 2/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E     K    +AGIDE GRG LAGPVV AA+I   + IPF   DSKK++ K+R+EL+
Sbjct: 9   QFEREYWNKGYKLIAGIDEAGRGPLAGPVVAAAVIFPQSVIPFLFKDSKKLTEKRRKELF 68

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            KI   AI + +  A    IDK NI  AT  A+  A+ +L V P   + D   I E+   
Sbjct: 69  FKIFEKAICVGVGFADSLEIDKLNILNATKLAVKRALSSLPVQPDFLITDALEI-EEFKD 127

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           ++  + KGD  S S A AS++AKVTRD +M    + +P YGF+ H GYPT  H   I+E 
Sbjct: 128 RSLVLTKGDEKSFSCACASVVAKVTRDFIMEKLAELFPAYGFEKHKGYPTKFHISKIEEI 187

Query: 192 GPSCIHRLTFRPLRN 206
           G S +HR +F  +R 
Sbjct: 188 GISPVHRRSFGRVRE 202


>gi|319939095|ref|ZP_08013459.1| ribonuclease HII [Streptococcus anginosus 1_2_62CV]
 gi|319812145|gb|EFW08411.1| ribonuclease HII [Streptococcus anginosus 1_2_62CV]
          Length = 260

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 91/197 (46%), Positives = 124/197 (62%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  +       +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKK+  KK +E+
Sbjct: 58  LRYEKELYATGCQYIAGIDEVGRGPLAGPVVAAAVILPKNYKIKGLNDSKKVPKKKHKEI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+++   AI + I    +Q ID+ NI++AT  A+  AV NL+V P+  LID   +  D+ 
Sbjct: 118 YQEVLKQAISVGIGIKDNQVIDEVNIYEATKLAMLEAVGNLEVAPQHLLIDAMQL--DVQ 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRDR+M      YP Y F  +VGY T  H + +K 
Sbjct: 176 VPQTSIIKGDANSLSIAAASIVAKVTRDRMMTNYELTYPGYDFAHNVGYGTQHHLEGLKR 235

Query: 191 KGPSCIHRLTFRPLRNL 207
           KG + IHR TF P++++
Sbjct: 236 KGITPIHRTTFEPIKSM 252


>gi|253573503|ref|ZP_04850846.1| ribonuclease HII [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251847031|gb|EES75036.1| ribonuclease HII [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 206

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 90/200 (45%), Positives = 120/200 (60%), Gaps = 6/200 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            + E    +     +AGIDEVGRG L G VV AA+IL    +   +NDSKK+S KKRE+L
Sbjct: 5   LKYEREYWQAGYSHIAGIDEVGRGCLFGDVVAAAVILPQGLVLEDVNDSKKLSAKKREKL 64

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ I   AI + I S     ID+ NI +AT  A+  AVE L + P   LID   +  D+P
Sbjct: 65  FDLIMEQAIAVGIGSVDAATIDQINIKQATRRAMKQAVEQLSIQPEYLLIDAEKV--DVP 122

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMR-IAHKKYPDYGFDSHVGYPTAKHQQVIK 189
               +VIKGD+ S SIAAASI+AKVTRDRL +     +YP+YG   H GY T  H++ + 
Sbjct: 123 IPQLSVIKGDATSQSIAAASIVAKVTRDRLCQGEWDARYPEYGIAVHKGYATKLHREQLL 182

Query: 190 EKGPSCIHRLTFRPLRNLSV 209
             GP+ +HR +F  +RNL V
Sbjct: 183 ALGPTPMHRKSF--MRNLFV 200


>gi|29376207|ref|NP_815361.1| ribonuclease HII [Enterococcus faecalis V583]
 gi|227518838|ref|ZP_03948887.1| ribonuclease HII [Enterococcus faecalis TX0104]
 gi|227553455|ref|ZP_03983504.1| ribonuclease HII [Enterococcus faecalis HH22]
 gi|256961843|ref|ZP_05566014.1| ribonuclease HII [Enterococcus faecalis Merz96]
 gi|293382908|ref|ZP_06628826.1| ribonuclease HII [Enterococcus faecalis R712]
 gi|293389603|ref|ZP_06634060.1| ribonuclease HII [Enterococcus faecalis S613]
 gi|312907622|ref|ZP_07766613.1| ribonuclease HII [Enterococcus faecalis DAPTO 512]
 gi|312910239|ref|ZP_07769086.1| ribonuclease HII [Enterococcus faecalis DAPTO 516]
 gi|39932363|sp|Q834J7|RNH2_ENTFA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|29343670|gb|AAO81431.1| ribonuclease HII [Enterococcus faecalis V583]
 gi|227073709|gb|EEI11672.1| ribonuclease HII [Enterococcus faecalis TX0104]
 gi|227177412|gb|EEI58384.1| ribonuclease HII [Enterococcus faecalis HH22]
 gi|256952339|gb|EEU68971.1| ribonuclease HII [Enterococcus faecalis Merz96]
 gi|291079573|gb|EFE16937.1| ribonuclease HII [Enterococcus faecalis R712]
 gi|291081220|gb|EFE18183.1| ribonuclease HII [Enterococcus faecalis S613]
 gi|310626650|gb|EFQ09933.1| ribonuclease HII [Enterococcus faecalis DAPTO 512]
 gi|311289512|gb|EFQ68068.1| ribonuclease HII [Enterococcus faecalis DAPTO 516]
 gi|315575779|gb|EFU87970.1| ribonuclease HII [Enterococcus faecalis TX0309B]
 gi|315580431|gb|EFU92622.1| ribonuclease HII [Enterococcus faecalis TX0309A]
          Length = 255

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 91/196 (46%), Positives = 126/196 (64%), Gaps = 3/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E    +K    +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S KKRE LY
Sbjct: 61  QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY 120

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I   A+ I +  A    ID+ NI++AT  A+  A+++L   P   LID   +  D+P 
Sbjct: 121 NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFTPDYLLIDAMQL--DVPQ 178

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASIIAKVTRDRLM    + YP YGF ++ GY T +H   +++ 
Sbjct: 179 PQESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKY 238

Query: 192 GPSCIHRLTFRPLRNL 207
           G + IHR TF P++++
Sbjct: 239 GVTPIHRRTFAPIKDM 254


>gi|241764771|ref|ZP_04762780.1| Ribonuclease H [Acidovorax delafieldii 2AN]
 gi|241365761|gb|EER60433.1| Ribonuclease H [Acidovorax delafieldii 2AN]
          Length = 205

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/182 (45%), Positives = 116/182 (63%), Gaps = 2/182 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82
             VAG+DE GRG LAGPVV AA+ILD  N   G+ DSKK++  +RE L+++I + A+  S
Sbjct: 20  GLVAGVDEAGRGPLAGPVVAAAVILDDLNPIAGLADSKKLTAARREALFDEIRAKALCCS 79

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+ AS + ID+ NI +ATL A+  AV  L++ P  A++DG  +P  L   A A++ GD++
Sbjct: 80  IAEASVEEIDRLNILQATLLAMRRAVMGLRLKPVRAVVDGNRLPL-LDMPADAIVNGDAL 138

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +I+AASI+AKV RDR      + +P YGF  H GY TA H   ++E G    HR TF 
Sbjct: 139 VPAISAASILAKVHRDRWCVQIDEHFPQYGFAGHKGYGTAVHMAALREHGACVHHRRTFA 198

Query: 203 PL 204
           P+
Sbjct: 199 PV 200


>gi|206560439|ref|YP_002231203.1| ribonuclease HII [Burkholderia cenocepacia J2315]
 gi|238693107|sp|B4ECL7|RNH2_BURCJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|198036480|emb|CAR52377.1| ribonuclease HII [Burkholderia cenocepacia J2315]
          Length = 214

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 89/182 (48%), Positives = 120/182 (65%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83
            V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKR+ LY+ I + +    +
Sbjct: 27  IVCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKVLSAKKRDLLYDLIVARSHAYCV 86

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS   ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  +A A++ GD++ 
Sbjct: 87  ASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LSVRAEAIVSGDALV 145

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+++P YGF+ H GY TAKH   ++E GP   HR +F P
Sbjct: 146 PSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAHRRSFAP 205

Query: 204 LR 205
           +R
Sbjct: 206 VR 207


>gi|229162773|ref|ZP_04290730.1| Ribonuclease HII [Bacillus cereus R309803]
 gi|228620655|gb|EEK77524.1| Ribonuclease HII [Bacillus cereus R309803]
          Length = 257

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y+
Sbjct: 62  YENALREKGLAYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I + AI I +   S Q ID+ NI++AT  A+  AV NL   P+  LID   +P   P  
Sbjct: 122 EIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPT--PIP 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+    KYP YGF+ H+GY T +H + I   G
Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGGKYPAYGFEQHMGYGTKQHLEAIAAHG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 240 VLEEHRKSFAPIKDM 254


>gi|254994768|ref|ZP_05276958.1| ribonuclease HII (rnhB) [Anaplasma marginale str. Mississippi]
          Length = 239

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 91/205 (44%), Positives = 125/205 (60%), Gaps = 2/205 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKI 63
           +   P F +E  +R   +  + G+DEVG GA+AGPVV AA+ L     +    I DSK +
Sbjct: 1   MNRMPSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKAL 60

Query: 64  SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
           S KKREEL+ KIT+ A   +  A  + I++HNI  A+  ++  A++NL V     L+DG 
Sbjct: 61  SSKKREELFCKITAHARYGVGFARVREIEQHNILVASHISMKRALQNLGVKADLVLVDGS 120

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
             P  LP     ++KGDSIS SIAAASIIAKVTRDR MR  H++YP+Y ++ + GY T  
Sbjct: 121 RAPAGLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKA 180

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLS 208
           H Q +K  G +  HR TF P++ LS
Sbjct: 181 HMQSLKLYGKTAQHRSTFAPVKQLS 205


>gi|304414200|ref|ZP_07395568.1| Ribonuclease HII [Candidatus Regiella insecticola LSR1]
 gi|304283414|gb|EFL91810.1| Ribonuclease HII [Candidatus Regiella insecticola LSR1]
          Length = 224

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 87/181 (48%), Positives = 109/181 (60%), Gaps = 2/181 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGR  L G VV AA+ILDP+    G+ DSKK+S KKR  LY+ IT  A   SI
Sbjct: 29  LIAGVDEVGRVPLVGAVVTAAVILDPSQPIEGLADSKKLSEKKRRALYQAITQKARSWSI 88

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID+ NI  ATL A+  AV  L + P   LIDG   P  L     AV+KGDS+ 
Sbjct: 89  GRAEPEEIDRLNILNATLLAMQRAVAGLDLTPDYVLIDGNRCPH-LSMPTMAVVKGDSLV 147

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDR M    +++P YGF  H GYPTA H + +   G    HR +F P
Sbjct: 148 AEISAASILAKVTRDREMVALDQRFPGYGFAQHKGYPTALHLKKLAALGVIPDHRRSFAP 207

Query: 204 L 204
           +
Sbjct: 208 V 208


>gi|295113049|emb|CBL31686.1| Ribonuclease HII [Enterococcus sp. 7L76]
 gi|315145132|gb|EFT89148.1| ribonuclease HII [Enterococcus faecalis TX2141]
 gi|315160534|gb|EFU04551.1| ribonuclease HII [Enterococcus faecalis TX0645]
 gi|315168949|gb|EFU12966.1| ribonuclease HII [Enterococcus faecalis TX1341]
          Length = 255

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 91/196 (46%), Positives = 126/196 (64%), Gaps = 3/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E    +K    +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S KKRE LY
Sbjct: 61  QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY 120

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I   A+ I +  A    ID+ NI++AT  A+  A+++L   P   LID   +  D+P 
Sbjct: 121 NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLIDAMQL--DVPQ 178

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASIIAKVTRDRLM    + YP YGF ++ GY T +H   +++ 
Sbjct: 179 PQESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKY 238

Query: 192 GPSCIHRLTFRPLRNL 207
           G + IHR TF P++++
Sbjct: 239 GVTPIHRRTFAPIKDM 254


>gi|218898990|ref|YP_002447401.1| ribonuclease HII [Bacillus cereus G9842]
 gi|228902340|ref|ZP_04066497.1| Ribonuclease [Bacillus thuringiensis IBL 4222]
 gi|228909662|ref|ZP_04073485.1| Ribonuclease [Bacillus thuringiensis IBL 200]
 gi|228966782|ref|ZP_04127826.1| Ribonuclease [Bacillus thuringiensis serovar sotto str. T04001]
 gi|226736813|sp|B7IUJ6|RNH2_BACC2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|218543986|gb|ACK96380.1| ribonuclease HII [Bacillus cereus G9842]
 gi|228792881|gb|EEM40439.1| Ribonuclease [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228849951|gb|EEM94782.1| Ribonuclease [Bacillus thuringiensis IBL 200]
 gi|228857309|gb|EEN01812.1| Ribonuclease [Bacillus thuringiensis IBL 4222]
          Length = 257

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 93/195 (47%), Positives = 128/195 (65%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y+
Sbjct: 62  YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   AI I +   S Q ID  NI++AT  A+  AV NL   P+  LID   +P   P  
Sbjct: 122 EIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP+YGF+ H+GY T +H + I+  G
Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEAIEVHG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 240 VLDEHRKSFAPIKDM 254


>gi|317478434|ref|ZP_07937595.1| ribonuclease HII [Bacteroides sp. 4_1_36]
 gi|316905393|gb|EFV27186.1| ribonuclease HII [Bacteroides sp. 4_1_36]
          Length = 202

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/179 (43%), Positives = 105/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++ K+R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPTDFKNELLNDSKQLTEKQRYTLREVIEKEALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + IDK NI  A+  A++ AV+ L V P+  LIDG    +        V+KGD   LS
Sbjct: 73  VSPEEIDKINILNASFLAMHRAVDQLNVRPQHLLIDGNRFKKYRDLPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H++YP Y ++ + GYPT KH+  I E+G +  HRLTF  L
Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPYYDWNRNKGYPTKKHRAAIAERGTTPYHRLTFNLL 191


>gi|49478406|ref|YP_037898.1| ribonuclease HII [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|118479059|ref|YP_896210.1| ribonuclease HII [Bacillus thuringiensis str. Al Hakam]
 gi|225865818|ref|YP_002751196.1| ribonuclease HII [Bacillus cereus 03BB102]
 gi|229186077|ref|ZP_04313246.1| Ribonuclease [Bacillus cereus BGSC 6E1]
 gi|301055327|ref|YP_003793538.1| ribonuclease HII [Bacillus anthracis CI]
 gi|73917596|sp|Q6HEX8|RNH2_BACHK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166225168|sp|A0RHL0|RNH2_BACAH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807966|sp|C1EP61|RNH2_BACC3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|49329962|gb|AAT60608.1| ribonuclease HII (RNase HII) [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118418284|gb|ABK86703.1| RNase HII [Bacillus thuringiensis str. Al Hakam]
 gi|225786445|gb|ACO26662.1| ribonuclease HII [Bacillus cereus 03BB102]
 gi|228597253|gb|EEK54904.1| Ribonuclease [Bacillus cereus BGSC 6E1]
 gi|300377496|gb|ADK06400.1| ribonuclease HII [Bacillus cereus biovar anthracis str. CI]
          Length = 257

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S  KRE  Y 
Sbjct: 62  YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYG 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I + AI I +   S Q ID+ NI++AT  A+  A+ NL   P   LID   +P   P  
Sbjct: 122 EIKAKAIAIGVGIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPT--PIP 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G
Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 240 VLEEHRKSFAPIKDM 254


>gi|332140483|ref|YP_004426221.1| ribonuclease HII [Alteromonas macleodii str. 'Deep ecotype']
 gi|254807962|sp|B4RVJ6|RNH2_ALTMD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|327550505|gb|AEA97223.1| ribonuclease HII [Alteromonas macleodii str. 'Deep ecotype']
          Length = 190

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 86/184 (46%), Positives = 112/184 (60%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP N   G+ DSKK+S KKR  L ++I   A+  +I
Sbjct: 4   LIAGVDEVGRGPLVGDVVTAAVILDPQNPIEGLTDSKKLSEKKRVALAQEIREKALYWNI 63

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             AS + IDK NI  AT+ A+  AVE L V P    +DG  +P      + AV+KGDS+ 
Sbjct: 64  GRASPEEIDKLNILHATMLAMIRAVEGLPVKPDFVRVDGNRLPA-WNFDSEAVVKGDSLH 122

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASIIAKV RD  M   H+ +P Y F  H GYPT  H + I E G    +R +F+P
Sbjct: 123 AEISAASIIAKVERDNDMISLHEAFPQYNFAGHKGYPTKAHFEAIAEYGILDCYRKSFKP 182

Query: 204 LRNL 207
           ++ L
Sbjct: 183 VKAL 186


>gi|154497939|ref|ZP_02036317.1| hypothetical protein BACCAP_01919 [Bacteroides capillosus ATCC
           29799]
 gi|150272929|gb|EDN00086.1| hypothetical protein BACCAP_01919 [Bacteroides capillosus ATCC
           29799]
          Length = 210

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/198 (40%), Positives = 117/198 (59%), Gaps = 4/198 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +E+E   +E+    + G DE G G LAGPV   A+IL    I  G+NDSKK++ K+R+ L
Sbjct: 10  WEIERSCKERGYQLICGADEAGAGPLAGPVYAGAVILPEGLILEGLNDSKKVTPKRRDRL 69

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +E+I   AI  +++S   + ID  NI  A + A+  A++ L+  P  ALIDG    + + 
Sbjct: 70  FEEIQEKAIAWAVASVDEKEIDAINILNARMKAMEMAIQALKPAPDYALIDGNR-DKGIT 128

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                V+KGD  S +IAAASI+AKV+RDR M    K YP+Y F+ H GY T  H +++ +
Sbjct: 129 IAHETVVKGDGRSANIAAASILAKVSRDRYMEEMAKLYPEYEFERHKGYGTKLHFELLMK 188

Query: 191 KGPSCIHRLTFRPLRNLS 208
            GP  IHR +F  L+ L 
Sbjct: 189 YGPCPIHRRSF--LKKLE 204


>gi|228916474|ref|ZP_04080040.1| Ribonuclease [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228947556|ref|ZP_04109846.1| Ribonuclease [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229123351|ref|ZP_04252555.1| Ribonuclease [Bacillus cereus 95/8201]
 gi|228660127|gb|EEL15763.1| Ribonuclease [Bacillus cereus 95/8201]
 gi|228812076|gb|EEM58407.1| Ribonuclease [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228843053|gb|EEM88135.1| Ribonuclease [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 257

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S  KRE  Y 
Sbjct: 62  YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYG 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I + AI I +   S Q ID+ NI++AT  A+  A+ NL   P   LID   +P   P  
Sbjct: 122 EIKAKAIAIGVGIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPT--PIP 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G
Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 240 VLEEHRKSFAPIKDM 254


>gi|240124405|ref|ZP_04737361.1| ribonuclease HII [Neisseria gonorrhoeae PID332]
          Length = 194

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/182 (43%), Positives = 105/182 (57%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG L G V  AA+IL       G+ DSKK+S KKR+ L E I   A+   +++
Sbjct: 6   AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKEQAVAWHVAA 65

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           ++ + I   NI  AT+ A+  AV  L   P    IDG  IPE L   A AV+KGDS  + 
Sbjct: 66  STPEEIASLNILHATMLAMKRAVYGLAARPEKIFIDGNRIPEHLGIPAEAVVKGDSKIIE 125

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AAS++AK  RD  M    ++ P YGFD H GY T +H + +K+ G    HR  F P+R
Sbjct: 126 ISAASVLAKTARDAEMYALAQRRPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185

Query: 206 NL 207
           NL
Sbjct: 186 NL 187


>gi|229157413|ref|ZP_04285491.1| Ribonuclease [Bacillus cereus ATCC 4342]
 gi|228626140|gb|EEK82889.1| Ribonuclease [Bacillus cereus ATCC 4342]
          Length = 257

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 91/195 (46%), Positives = 129/195 (66%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y+
Sbjct: 62  YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I + A+ I +   S + ID+ NI++AT  A+  AV NL   P+  LID   +P   P  
Sbjct: 122 EIKAQAVAIGVGIVSPRVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPT--PIP 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G
Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 240 ILEEHRKSFAPIKDM 254


>gi|160891452|ref|ZP_02072455.1| hypothetical protein BACUNI_03903 [Bacteroides uniformis ATCC 8492]
 gi|156858859|gb|EDO52290.1| hypothetical protein BACUNI_03903 [Bacteroides uniformis ATCC 8492]
          Length = 202

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/179 (43%), Positives = 105/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++ K+R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPTDFKNELLNDSKQLTEKQRYTLREVIEKEALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + IDK NI  A+  A++ AV+ L V P+  LIDG    +        V+KGD   LS
Sbjct: 73  VSPEEIDKINILNASFLAMHRAVDQLNVRPQHLLIDGNRFKKYRDLPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H++YP Y ++ + GYPT KH+  I E+G +  HRLTF  L
Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPYYDWNRNKGYPTKKHRAAIAERGTTPYHRLTFNLL 191


>gi|113868020|ref|YP_726509.1| ribonuclease HII [Ralstonia eutropha H16]
 gi|123133958|sp|Q0KA30|RNH2_RALEH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|113526796|emb|CAJ93141.1| Ribonuclease HII [Ralstonia eutropha H16]
          Length = 238

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 84/201 (41%), Positives = 122/201 (60%), Gaps = 5/201 (2%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P   L+       +  + G+DE GRG LAGPV  AA+ILDP     G+ DSK ++  KRE
Sbjct: 9   PQMGLDLAPAAAAVQRLCGVDEAGRGPLAGPVYAAAVILDPKRPIRGLADSKILTAAKRE 68

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSI 125
           +LYEKI   A+   I+ A+ + ID  NI  A++ A+  AV+ L    ++P    +DG   
Sbjct: 69  QLYEKICERALGWHIAFATVEEIDTLNILHASMLAMQRAVQGLAASGIVPDLVQVDGNRC 128

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  +P    A+++GD++  +I+AASI+AKV RDR +R+ H++YP YGFDSHVGY T +H 
Sbjct: 129 PR-VPFPVEAIVQGDALVKAISAASILAKVARDRELRVLHERYPQYGFDSHVGYGTPQHL 187

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
             + E G +  HR +F P+R 
Sbjct: 188 AALAEFGATPHHRRSFAPVRE 208


>gi|270295437|ref|ZP_06201638.1| ribonuclease HII [Bacteroides sp. D20]
 gi|270274684|gb|EFA20545.1| ribonuclease HII [Bacteroides sp. D20]
          Length = 202

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/179 (43%), Positives = 105/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++ K+R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPTDFKNELLNDSKQLTEKQRYTLREVIEKEALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + IDK NI  A+  A++ AV+ L V P+  LIDG    +        V+KGD   LS
Sbjct: 73  ISPEEIDKINILNASFLAMHRAVDQLNVRPQHLLIDGNRFKKYRDLPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H++YP Y ++ + GYPT KH+  I E+G +  HRLTF  L
Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPYYDWNRNKGYPTKKHRAAIAERGTTPYHRLTFNLL 191


>gi|218264672|ref|ZP_03478435.1| hypothetical protein PRABACTJOHN_04144 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221859|gb|EEC94509.1| hypothetical protein PRABACTJOHN_04144 [Parabacteroides johnsonii
           DSM 18315]
          Length = 199

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/179 (43%), Positives = 103/179 (57%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL P+     +NDSK++S KKR  L   I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGPVYAAAVILPPDFHNEDLNDSKQLSEKKRYALRPIIEQEAIAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + ID+ NI KA+  A++ A++ L+V P   LIDG         +   V+KGD   LS
Sbjct: 73  VTPEEIDRINILKASFLAMHRAIDGLKVKPEHLLIDGNRFTPYPGVKHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M     +YP Y +  + GYPT  H++ I+E G +  HR TF  L
Sbjct: 133 IAAASILAKTYRDDYMNSLDLEYPAYHWKENKGYPTKAHREAIRECGITPYHRKTFTLL 191


>gi|313114085|ref|ZP_07799637.1| ribonuclease HII [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623494|gb|EFQ06897.1| ribonuclease HII [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 215

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 87/193 (45%), Positives = 116/193 (60%), Gaps = 2/193 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P +E +A VR +     AG+DE GRG L GPV VAA ILDP N  FGINDSKK++ KKRE
Sbjct: 12  PLYEYDAAVRSQ-YGCFAGVDEAGRGPLCGPVCVAACILDPENPVFGINDSKKLTEKKRE 70

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            L+++I   A+   I     + ID+ NI  AT+  +  AVE L ++P   L+DG   P  
Sbjct: 71  ALFDEIIEKALAYKIVFVGPEIIDRDNILNATMGGMKQAVEELDIVPNLVLVDGNRTPAG 130

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L   A  V+KGD+ S SI AAS++AKV+RDR M    ++YP Y    H GYPT  H ++I
Sbjct: 131 LLVPAQPVVKGDATSASIGAASVLAKVSRDRYMLELDRQYPQYQLAKHKGYPTKLHYELI 190

Query: 189 KEKGPSCIHRLTF 201
            + G    +R +F
Sbjct: 191 AQYGIQPFYRRSF 203


>gi|320529141|ref|ZP_08030233.1| ribonuclease HII [Selenomonas artemidis F0399]
 gi|320138771|gb|EFW30661.1| ribonuclease HII [Selenomonas artemidis F0399]
          Length = 255

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 89/187 (47%), Positives = 115/187 (61%), Gaps = 2/187 (1%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
               VAG+DE GRG LAGPV VAA IL        +NDSKK+S K R EL+E+IT  AI 
Sbjct: 68  GHILVAGVDEAGRGPLAGPVAVAAAILPQELYLPRLNDSKKLSAKVRAELFEEITEKAIA 127

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             ++      ID+ NI +AT   +Y AV  L   P   L+D   +P+ L     ++IKGD
Sbjct: 128 YHVTLIDAAEIDRINILQATRRGMYEAVAALTPAPEEVLVDAVELPQ-LRMPVQSIIKGD 186

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           + S+SIAAASI+AKVTRDRLM     +YP YGF  H GY TA+H   I+ +G + IHR T
Sbjct: 187 AKSVSIAAASILAKVTRDRLMERYDTEYPGYGFAGHKGYGTAEHIAAIRAQGVTPIHRRT 246

Query: 201 FRPLRNL 207
           F P+R++
Sbjct: 247 FEPIRSM 253


>gi|198274378|ref|ZP_03206910.1| hypothetical protein BACPLE_00523 [Bacteroides plebeius DSM 17135]
 gi|198272744|gb|EDY97013.1| hypothetical protein BACPLE_00523 [Bacteroides plebeius DSM 17135]
          Length = 200

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 75/179 (41%), Positives = 100/179 (55%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85
           AG DE GRG LAG V  AA+IL P      +NDSKK++ K+R EL   I   A   ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPPGFQNEMLNDSKKLTEKQRYELRTVIEKEATAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + IDK NI  A+  A++ AV  L+V P+  LIDG             ++KGD   LS
Sbjct: 73  VTPEEIDKINILNASFLAMHRAVSQLKVTPQHLLIDGNRFNPYPGIPHTTIVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H++YP Y +  + GYPT KH+  I   G +  HR++F  L
Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPMYDWKGNKGYPTKKHRAAIAAYGTTPYHRMSFNLL 191


>gi|167586869|ref|ZP_02379257.1| ribonuclease HII [Burkholderia ubonensis Bu]
          Length = 214

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 90/182 (49%), Positives = 120/182 (65%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83
            V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKR+ LYE I + +    +
Sbjct: 27  IVCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLDDSKALSAKKRDALYELIVARSRAYCV 86

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS   ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  +A A++ GD++ 
Sbjct: 87  ASASVDEIDTLNILHATMLAMKRAVEGLAVVPTLAQIDGNRCPT-LSVRAEAIVSGDALV 145

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+++P YGF+ H GY TAKH   ++E GP   HR +F P
Sbjct: 146 PSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAHRRSFAP 205

Query: 204 LR 205
           +R
Sbjct: 206 VR 207


>gi|197120709|ref|YP_002132660.1| ribonuclease HII [Anaeromyxobacter sp. K]
 gi|196170558|gb|ACG71531.1| Ribonuclease H [Anaeromyxobacter sp. K]
          Length = 283

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/195 (41%), Positives = 116/195 (59%), Gaps = 2/195 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              EA + E+ +  VAG+DE G   LAGPVV  A +L  +  P GI+DSK++   +RE L
Sbjct: 66  LRYEAELWERGLVHVAGVDEAGMAPLAGPVVAGACVLPLDYRPRGIDDSKQLDRAERERL 125

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            E I  +A+  +++ A  + ID+ N++ A + A+  AV+ L   P   L+D R +P DLP
Sbjct: 126 AEDIKRNAVCWAVARAEVEEIDRLNVYWAGMLALRRAVDGLSARPEHLLVDARKLP-DLP 184

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                ++ GD++SL+IAAASI+AK  RD LM      +P YGF  H GYPTA+H + +  
Sbjct: 185 FPQTPIVHGDALSLTIAAASILAKTARDALMAELDLVHPGYGFARHKGYPTAEHFEALGR 244

Query: 191 KGPSCIHRLTFRPLR 205
            G   IHR +F P+R
Sbjct: 245 LGACPIHRRSFTPVR 259


>gi|225568157|ref|ZP_03777182.1| hypothetical protein CLOHYLEM_04231 [Clostridium hylemonae DSM
           15053]
 gi|225163110|gb|EEG75729.1| hypothetical protein CLOHYLEM_04231 [Clostridium hylemonae DSM
           15053]
          Length = 219

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 89/186 (47%), Positives = 113/186 (60%), Gaps = 4/186 (2%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII- 81
              + GIDEVGRG LAGPVV  A+IL  ++    +NDSKK+S KKRE LY++I   A+  
Sbjct: 36  YRYICGIDEVGRGPLAGPVVAGAVILPKDDPVLYLNDSKKLSEKKREMLYDEIMEKAVAT 95

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
            I     Q ID+ NI +AT +A+  A+ +L V P   L D  +IP  +      +IKGD+
Sbjct: 96  GIGIVGPQRIDEINILQATYEAMRMAIADLPVQPDILLNDAVTIP-GVEILQVPIIKGDA 154

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            S+SIAAASIIAKVTRDRLM    K  P Y   S+ GY T  H   +KE GPS IHR TF
Sbjct: 155 KSVSIAAASIIAKVTRDRLMVEYDKILPGYDLASNKGYGTKAHIAGLKEHGPSPIHRATF 214

Query: 202 RPLRNL 207
             ++N 
Sbjct: 215 --IKNF 218


>gi|284102975|ref|ZP_06386058.1| Ribonuclease HII [Candidatus Poribacteria sp. WGA-A3]
 gi|283830303|gb|EFC34542.1| Ribonuclease HII [Candidatus Poribacteria sp. WGA-A3]
          Length = 216

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 86/198 (43%), Positives = 119/198 (60%), Gaps = 2/198 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P  +LE   R +    VAG+DE GRG LAGPVV AA+I+        ++DSKK+S  +RE
Sbjct: 13  PTCDLEEEARTRGYRRVAGLDEAGRGPLAGPVVGAAVIVPRRFSLRSLDDSKKVSPTERE 72

Query: 70  ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            L+  IT SA    I  AS   ID  N+ +AT  A   A+  L++ P   L+DG  +  D
Sbjct: 73  ALFSVITESATAWGIGVASEAEIDSLNVLRATWLAWQRAINQLRIPPDFLLVDG-HLGAD 131

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           +     +VI GD +S SIAAASI+AKV RDR+M   H++ P Y F  H GYPT +H +++
Sbjct: 132 VFIPHRSVIHGDRLSSSIAAASILAKVFRDRIMCEYHERDPRYRFHIHKGYPTPEHLRLL 191

Query: 189 KEKGPSCIHRLTFRPLRN 206
           ++ GPS +HR +F P+R 
Sbjct: 192 RQFGPSPVHRHSFGPVRR 209


>gi|224825027|ref|ZP_03698133.1| Ribonuclease H [Lutiella nitroferrum 2002]
 gi|224602698|gb|EEG08875.1| Ribonuclease H [Lutiella nitroferrum 2002]
          Length = 193

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/181 (44%), Positives = 113/181 (62%), Gaps = 1/181 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DE GRG LAG V  AA+ILDP     G+ DSKK+S K+R+EL   I   ++   I+
Sbjct: 2   IAGVDEAGRGPLAGAVFAAAVILDPARPIVGLADSKKLSEKQRDELAPLIRERSLAWCIA 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SAS   ID+ NI +AT+ A+  AV  L V+P   LIDG  +P+ +   A A++KGD++  
Sbjct: 62  SASVDEIDRLNILQATMLAMSRAVAGLSVLPAEVLIDGNRVPKGIAVPARAIVKGDALEP 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AK  RD  +      +P++GF  H GYPTA+H   I+  G    HR TF P+
Sbjct: 122 AISAASILAKTARDAELVALDALHPEFGFARHKGYPTAEHLAAIERFGVLPEHRRTFGPV 181

Query: 205 R 205
           +
Sbjct: 182 K 182


>gi|213610034|ref|ZP_03369860.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 184

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 84/179 (46%), Positives = 109/179 (60%), Gaps = 2/179 (1%)

Query: 29  IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSAS 87
           +DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  LY++I   A+  S+  A 
Sbjct: 1   MDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLSLYDEIKEKALSWSLGRAE 60

Query: 88  HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147
              ID+ NI  AT+ A+  AV  L + P   LIDG   PE LP  + AV+KGDS    I+
Sbjct: 61  AHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPE-LPVPSMAVVKGDSRVAEIS 119

Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           AASI+AKVTRD  M      +P YGF  H GYPTA H + + + G +  HR +F P++ 
Sbjct: 120 AASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAQYGATAHHRRSFAPVKR 178


>gi|327398743|ref|YP_004339612.1| Ribonuclease H [Hippea maritima DSM 10411]
 gi|327181372|gb|AEA33553.1| Ribonuclease H [Hippea maritima DSM 10411]
          Length = 382

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 85/186 (45%), Positives = 114/186 (61%), Gaps = 2/186 (1%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAII 81
           M   AG+DE GRG  AGPVV A +IL+ +    G I+DSKK+S KKREELY  I  ++I 
Sbjct: 1   MGKTAGVDEAGRGPWAGPVVAACVILNKDIPHLGDIDDSKKLSPKKREELYRVIKENSIY 60

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
            I   S++ IDK  I KA   AI  A++ +   P   LIDG+    DLP +   +I+GD+
Sbjct: 61  GIGVVSNKEIDKLGIVKAVELAIKRAIDVMDEKPSFLLIDGKD-RFDLPIKYKTIIEGDA 119

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
              SIAAASI+AKV RDR M +    YP YGF+ H GY T  H   +++ GP  IHR +F
Sbjct: 120 KVKSIAAASILAKVWRDRYMELVADIYPKYGFEKHKGYGTKAHTLALEKYGPCQIHRFSF 179

Query: 202 RPLRNL 207
           +P++ +
Sbjct: 180 KPIQRV 185


>gi|254739600|ref|ZP_05197294.1| ribonuclease HII [Bacillus anthracis str. Kruger B]
          Length = 257

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 93/196 (47%), Positives = 128/196 (65%), Gaps = 3/196 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S  KRE  Y 
Sbjct: 62  YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYG 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I + AI I +   S Q ID+ NI++AT  A+  A+ NL   P   LID   +P   P  
Sbjct: 122 EIKAKAIAIGVGIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPA--PIP 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G
Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239

Query: 193 PSCIHRLTFRPLRNLS 208
               HR +F P+++++
Sbjct: 240 VLEEHRKSFAPIKDMN 255


>gi|229545737|ref|ZP_04434462.1| ribonuclease HII [Enterococcus faecalis TX1322]
 gi|229549926|ref|ZP_04438651.1| ribonuclease HII [Enterococcus faecalis ATCC 29200]
 gi|255972709|ref|ZP_05423295.1| ribonuclease HII [Enterococcus faecalis T1]
 gi|256619148|ref|ZP_05475994.1| ribonuclease HII [Enterococcus faecalis ATCC 4200]
 gi|256762584|ref|ZP_05503164.1| ribonuclease HII [Enterococcus faecalis T3]
 gi|256853210|ref|ZP_05558580.1| ribonuclease HII [Enterococcus faecalis T8]
 gi|256959064|ref|ZP_05563235.1| ribonuclease HII [Enterococcus faecalis DS5]
 gi|256965040|ref|ZP_05569211.1| ribonuclease HII [Enterococcus faecalis HIP11704]
 gi|257079095|ref|ZP_05573456.1| ribonuclease HII [Enterococcus faecalis JH1]
 gi|257082466|ref|ZP_05576827.1| ribonuclease HII [Enterococcus faecalis E1Sol]
 gi|257086659|ref|ZP_05581020.1| ribonuclease HII [Enterococcus faecalis D6]
 gi|257416178|ref|ZP_05593172.1| ribonuclease HII [Enterococcus faecalis AR01/DG]
 gi|257419380|ref|ZP_05596374.1| ribonuclease HII [Enterococcus faecalis T11]
 gi|257422526|ref|ZP_05599516.1| ribonuclease HII [Enterococcus faecalis X98]
 gi|294781634|ref|ZP_06746970.1| ribonuclease HII [Enterococcus faecalis PC1.1]
 gi|300860321|ref|ZP_07106408.1| ribonuclease HII [Enterococcus faecalis TUSoD Ef11]
 gi|307270933|ref|ZP_07552216.1| ribonuclease HII [Enterococcus faecalis TX4248]
 gi|307273138|ref|ZP_07554384.1| ribonuclease HII [Enterococcus faecalis TX0855]
 gi|307274873|ref|ZP_07556036.1| ribonuclease HII [Enterococcus faecalis TX2134]
 gi|307289192|ref|ZP_07569148.1| ribonuclease HII [Enterococcus faecalis TX0109]
 gi|307291911|ref|ZP_07571780.1| ribonuclease HII [Enterococcus faecalis TX0411]
 gi|312899500|ref|ZP_07758830.1| ribonuclease HII [Enterococcus faecalis TX0470]
 gi|312951583|ref|ZP_07770479.1| ribonuclease HII [Enterococcus faecalis TX0102]
 gi|229304939|gb|EEN70935.1| ribonuclease HII [Enterococcus faecalis ATCC 29200]
 gi|229309187|gb|EEN75174.1| ribonuclease HII [Enterococcus faecalis TX1322]
 gi|255963727|gb|EET96203.1| ribonuclease HII [Enterococcus faecalis T1]
 gi|256598675|gb|EEU17851.1| ribonuclease HII [Enterococcus faecalis ATCC 4200]
 gi|256683835|gb|EEU23530.1| ribonuclease HII [Enterococcus faecalis T3]
 gi|256711669|gb|EEU26707.1| ribonuclease HII [Enterococcus faecalis T8]
 gi|256949560|gb|EEU66192.1| ribonuclease HII [Enterococcus faecalis DS5]
 gi|256955536|gb|EEU72168.1| ribonuclease HII [Enterococcus faecalis HIP11704]
 gi|256987125|gb|EEU74427.1| ribonuclease HII [Enterococcus faecalis JH1]
 gi|256990496|gb|EEU77798.1| ribonuclease HII [Enterococcus faecalis E1Sol]
 gi|256994689|gb|EEU81991.1| ribonuclease HII [Enterococcus faecalis D6]
 gi|257158006|gb|EEU87966.1| ribonuclease HII [Enterococcus faecalis ARO1/DG]
 gi|257161208|gb|EEU91168.1| ribonuclease HII [Enterococcus faecalis T11]
 gi|257164350|gb|EEU94310.1| ribonuclease HII [Enterococcus faecalis X98]
 gi|294451330|gb|EFG19796.1| ribonuclease HII [Enterococcus faecalis PC1.1]
 gi|300849360|gb|EFK77110.1| ribonuclease HII [Enterococcus faecalis TUSoD Ef11]
 gi|306496909|gb|EFM66457.1| ribonuclease HII [Enterococcus faecalis TX0411]
 gi|306499901|gb|EFM69262.1| ribonuclease HII [Enterococcus faecalis TX0109]
 gi|306508321|gb|EFM77428.1| ribonuclease HII [Enterococcus faecalis TX2134]
 gi|306510123|gb|EFM79147.1| ribonuclease HII [Enterococcus faecalis TX0855]
 gi|306512431|gb|EFM81080.1| ribonuclease HII [Enterococcus faecalis TX4248]
 gi|310630549|gb|EFQ13832.1| ribonuclease HII [Enterococcus faecalis TX0102]
 gi|311293370|gb|EFQ71926.1| ribonuclease HII [Enterococcus faecalis TX0470]
 gi|315027181|gb|EFT39113.1| ribonuclease HII [Enterococcus faecalis TX2137]
 gi|315029298|gb|EFT41230.1| ribonuclease HII [Enterococcus faecalis TX4000]
 gi|315034056|gb|EFT45988.1| ribonuclease HII [Enterococcus faecalis TX0017]
 gi|315037065|gb|EFT48997.1| ribonuclease HII [Enterococcus faecalis TX0027]
 gi|315147349|gb|EFT91365.1| ribonuclease HII [Enterococcus faecalis TX4244]
 gi|315152395|gb|EFT96411.1| ribonuclease HII [Enterococcus faecalis TX0031]
 gi|315155667|gb|EFT99683.1| ribonuclease HII [Enterococcus faecalis TX0043]
 gi|315158162|gb|EFU02179.1| ribonuclease HII [Enterococcus faecalis TX0312]
 gi|315164101|gb|EFU08118.1| ribonuclease HII [Enterococcus faecalis TX1302]
 gi|315169817|gb|EFU13834.1| ribonuclease HII [Enterococcus faecalis TX1342]
 gi|315172218|gb|EFU16235.1| ribonuclease HII [Enterococcus faecalis TX1346]
 gi|327535218|gb|AEA94052.1| ribonuclease H [Enterococcus faecalis OG1RF]
          Length = 255

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 91/196 (46%), Positives = 126/196 (64%), Gaps = 3/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E    +K    +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S KKRE LY
Sbjct: 61  QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY 120

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I   A+ I +  A    ID+ NI++AT  A+  A+++L   P   LID   +  D+P 
Sbjct: 121 NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLIDAMQL--DVPQ 178

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASIIAKVTRDRLM    + YP YGF ++ GY T +H   +++ 
Sbjct: 179 PQESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKY 238

Query: 192 GPSCIHRLTFRPLRNL 207
           G + IHR TF P++++
Sbjct: 239 GVTPIHRRTFAPIKDM 254


>gi|114764188|ref|ZP_01443426.1| ribonuclease HII [Pelagibaca bermudensis HTCC2601]
 gi|114543340|gb|EAU46356.1| ribonuclease HII [Roseovarius sp. HTCC2601]
          Length = 215

 Score =  248 bits (634), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 93/207 (44%), Positives = 136/207 (65%), Gaps = 1/207 (0%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           M      + P    E  +  +N+  VAG+DEVGRG LAGPVV AA++LDP  IP G+NDS
Sbjct: 1   MVFMGGMDGPDDSFETPLWGENL-RVAGVDEVGRGPLAGPVVAAAVVLDPLCIPPGLNDS 59

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           KK+S K+R  L   +   A +SI  A+ + ID+ NI +A+L A++ AV  L+   + AL+
Sbjct: 60  KKLSAKRRARLAGWLHECAEVSIGVATVEEIDELNILQASLLAMHRAVTGLKRPAQHALV 119

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DGR IP  LPC A  +IKGD  S+SIAAAS++AK  RDRLMR   +++P YG++++ GY 
Sbjct: 120 DGRFIPPQLPCHATPIIKGDGRSVSIAAASVVAKCYRDRLMRDLAQQHPGYGWETNAGYG 179

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           + KH++ ++  G +  HR +F+P+ N+
Sbjct: 180 SKKHKEALQNLGVTPHHRRSFKPIHNI 206


>gi|312903393|ref|ZP_07762573.1| ribonuclease HII [Enterococcus faecalis TX0635]
 gi|310633269|gb|EFQ16552.1| ribonuclease HII [Enterococcus faecalis TX0635]
 gi|315577621|gb|EFU89812.1| ribonuclease HII [Enterococcus faecalis TX0630]
          Length = 255

 Score =  248 bits (634), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 91/196 (46%), Positives = 126/196 (64%), Gaps = 3/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E    +K    +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S KKRE LY
Sbjct: 61  QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY 120

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I   A+ I +  A    ID+ NI++AT  A+  A+++L   P   LID   +  D+P 
Sbjct: 121 NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLIDAMQL--DVPQ 178

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASIIAKVTRDRLM    + YP YGF ++ GY T +H   +++ 
Sbjct: 179 PQESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKY 238

Query: 192 GPSCIHRLTFRPLRNL 207
           G + IHR TF P++++
Sbjct: 239 GVTPIHRRTFAPIKDM 254


>gi|255975761|ref|ZP_05426347.1| ribonuclease HII [Enterococcus faecalis T2]
 gi|307277980|ref|ZP_07559064.1| ribonuclease HII [Enterococcus faecalis TX0860]
 gi|255968633|gb|EET99255.1| ribonuclease HII [Enterococcus faecalis T2]
 gi|306505377|gb|EFM74563.1| ribonuclease HII [Enterococcus faecalis TX0860]
          Length = 255

 Score =  248 bits (634), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 91/196 (46%), Positives = 126/196 (64%), Gaps = 3/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E    +K    +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S KKRE LY
Sbjct: 61  QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY 120

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I   A+ I +  A    ID+ NI++AT  A+  A+++L   P   LID   +  D+P 
Sbjct: 121 NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLIDAMQL--DVPQ 178

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASIIAKVTRDRLM    + YP YGF ++ GY T +H   +++ 
Sbjct: 179 PQESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKY 238

Query: 192 GPSCIHRLTFRPLRNL 207
           G + IHR TF P++++
Sbjct: 239 GVTPIHRRTFAPIKDM 254


>gi|194335200|ref|YP_002016994.1| Ribonuclease H [Pelodictyon phaeoclathratiforme BU-1]
 gi|238693361|sp|B4SAK8|RNH2_PELPB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|194307677|gb|ACF42377.1| Ribonuclease H [Pelodictyon phaeoclathratiforme BU-1]
          Length = 206

 Score =  248 bits (634), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 86/202 (42%), Positives = 115/202 (56%), Gaps = 8/202 (3%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-----INDSKKISHKK 67
           + E  +  +    V GIDE GRG LAGPVV AA+I      P G     +NDSKK+S  +
Sbjct: 4   DYEWPLW-QTTALVCGIDEAGRGPLAGPVVAAAVIFPRWFRPVGTILERVNDSKKLSAAE 62

Query: 68  REELYEKIT-SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           RE L   I  ++A  +++    + ID+ NI +AT+ A+  AV  L + P   L+DG    
Sbjct: 63  RELLAPAIRNAAAFWAVAEVDPETIDQINILQATMLAMNQAVAALPIQPELLLVDGNRFR 122

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            +LP     V+KGDS   SIAAAS++AK  RD LM     +YP YGF+ HVGYPT  H +
Sbjct: 123 TELPIPYETVVKGDSKVFSIAAASVLAKTHRDELMVAYASEYPQYGFERHVGYPTRAHVE 182

Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208
            I++ G   IHR +FR LR L 
Sbjct: 183 AIRQHGRCPIHRQSFR-LRQLG 203


>gi|187478242|ref|YP_786266.1| ribonuclease HII [Bordetella avium 197N]
 gi|97182295|sp|Q2L146|RNH2_BORA1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|115422828|emb|CAJ49356.1| ribonuclease HII [Bordetella avium 197N]
          Length = 202

 Score =  248 bits (634), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 84/185 (45%), Positives = 112/185 (60%), Gaps = 2/185 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG+DE GRG LAG V  AA+ILDP     G+ DSK +  ++RE L E+I + A+   I+
Sbjct: 17  VAGVDEAGRGPLAGAVYAAAVILDPQRPIDGLADSKVLKAERRERLAEQIKAQALSWCIA 76

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID  NI +ATL A+  AVE L  +P  AL+DG   P  L C    +IKGD++  
Sbjct: 77  CASTDEIDSMNILRATLLAMQRAVEGLNQLPSLALVDGNQAPR-LRCAVQTIIKGDALVP 135

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AK  RD  ++  H  YP YGFD H GY TA H   ++E GP   HR +F P+
Sbjct: 136 AISAASILAKTARDAELQRLHALYPQYGFDQHKGYGTALHLARLREYGPCPEHRRSFAPI 195

Query: 205 RNLSV 209
           +   +
Sbjct: 196 KAFGI 200


>gi|153874551|ref|ZP_02002729.1| Ribonuclease HII [Beggiatoa sp. PS]
 gi|152068988|gb|EDN67274.1| Ribonuclease HII [Beggiatoa sp. PS]
          Length = 197

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 82/186 (44%), Positives = 119/186 (63%), Gaps = 2/186 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG LAGPV+ AA+ILD  +   G+ DSK +S K+RE L ++I   A+  ++
Sbjct: 9   LIAGVDEVGRGPLAGPVIAAAVILDEAHPIVGLADSKTLSEKRREALAKEIRQRALAYAL 68

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID  NI +A+L A+  AV+NL ++P   L+DG+  P+ L C   A+I+GD   
Sbjct: 69  GRAEVEEIDHINILQASLLAMQRAVKNLPIVPEHVLVDGKFCPQ-LDCSVEAIIQGDKKV 127

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKV RD  MR     YP YGF +H GYPT  H++ ++  G + IHR +F P
Sbjct: 128 QVISAASILAKVVRDEEMREMDHLYPGYGFAAHKGYPTRAHREALQRLGATVIHRRSFAP 187

Query: 204 LRNLSV 209
           +R + +
Sbjct: 188 VRQVLL 193


>gi|228935151|ref|ZP_04097978.1| Ribonuclease [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228824516|gb|EEM70321.1| Ribonuclease [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 257

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 93/195 (47%), Positives = 126/195 (64%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S  KRE  Y+
Sbjct: 62  YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYD 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   AI I +   S Q ID+ NI++AT  A+  AV NL       LID   +P   P  
Sbjct: 122 EIKEKAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTTEYLLIDAMKLPT--PIP 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G
Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 240 VLEEHRKSFAPIKDM 254


>gi|193215094|ref|YP_001996293.1| ribonuclease HII [Chloroherpeton thalassium ATCC 35110]
 gi|238692680|sp|B3QRP3|RNH2_CHLT3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|193088571|gb|ACF13846.1| Ribonuclease H [Chloroherpeton thalassium ATCC 35110]
          Length = 204

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 88/195 (45%), Positives = 112/195 (57%), Gaps = 6/195 (3%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKR 68
             E+   +K    + G+DEVGRG LAGPVV AA+I D    P GI    +DSK + H+ R
Sbjct: 4   AFESPYWKK-FQYICGVDEVGRGPLAGPVVAAAVIFDRYFEPSGILEQIDDSKALRHETR 62

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
             L  +I   A+  SI+  S + ID+ NI +AT  A+  A+E L  IP   LIDG     
Sbjct: 63  VLLSSEIKKQALSFSIAEISPEVIDEVNILQATFLAMNQAIEQLSPIPEFLLIDGNRFKT 122

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            LP     V+KGDS   SIAAASIIAKV RD  M    ++YP+YGF  H GYPT  H + 
Sbjct: 123 TLPIPFETVVKGDSKVFSIAAASIIAKVHRDNFMINLAERYPEYGFAQHFGYPTKAHIEA 182

Query: 188 IKEKGPSCIHRLTFR 202
           IK  G S +HR +F+
Sbjct: 183 IKMFGRSKVHRKSFK 197


>gi|218197065|gb|EEC79492.1| hypothetical protein OsI_20541 [Oryza sativa Indica Group]
          Length = 501

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 82/176 (46%), Positives = 108/176 (61%), Gaps = 2/176 (1%)

Query: 32  VGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQY 90
           VGRG L G VV AA+ILDP     G+ DSKK+S K+R  LY++I + A+  S+  A    
Sbjct: 323 VGRGPLVGAVVTAAVILDPAQPIVGLADSKKLSEKRRLALYDEIVAKALSWSLGRAEPAE 382

Query: 91  IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAAS 150
           ID+ NI  AT+ A+  AV  L + P   LIDG   P  LP ++ AV+KGDS    I+AAS
Sbjct: 383 IDQLNILHATMLAMQRAVAGLHIAPDMVLIDGNRCP-SLPMRSQAVVKGDSRVAEISAAS 441

Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           I+AKVTRDR M     ++PDYGF  H GYPTA H + +   G +  HR +F P++ 
Sbjct: 442 ILAKVTRDREMAELDSEFPDYGFAQHKGYPTAFHLERLAALGATEHHRRSFAPVKR 497


>gi|229031467|ref|ZP_04187467.1| Ribonuclease [Bacillus cereus AH1271]
 gi|228729756|gb|EEL80736.1| Ribonuclease [Bacillus cereus AH1271]
          Length = 257

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 93/196 (47%), Positives = 128/196 (65%), Gaps = 3/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KRE  Y
Sbjct: 61  RYEIALREKGLTLIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFY 120

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           ++I + AI I +   S Q ID+ NI++AT  A+  AV NL   P   LID   +P   P 
Sbjct: 121 DEIKAQAIVIGVGIVSPQIIDEINIYQATKQAMLDAVANLSCAPEYLLIDAMKLPT--PI 178

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  
Sbjct: 179 PQTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAH 238

Query: 192 GPSCIHRLTFRPLRNL 207
           G    HR +F P++++
Sbjct: 239 GVLEEHRKSFAPIKDM 254


>gi|152976203|ref|YP_001375720.1| ribonuclease HII [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|189043565|sp|A7GRG7|RNH2_BACCN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|152024955|gb|ABS22725.1| Ribonuclease H [Bacillus cytotoxicus NVH 391-98]
          Length = 259

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 92/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +R++ +  +AGIDEVGRG LAGPVV AA+IL       G+NDSKK+S  KRE  Y+
Sbjct: 62  YENALRKQGISYIAGIDEVGRGPLAGPVVTAAVILPEEFYIPGLNDSKKLSEAKRELFYD 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   AI I +   S Q ID+ NI++AT  A+  AV NL   P   LID   +P  +P  
Sbjct: 122 EIREKAIAIGVGIVSPQVIDEMNIYQATKRAMLDAVANLSYAPEHLLIDAMKLPTSIP-- 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             +++KGD+ S+SI+AASIIAKVTRDR+M+   K YP+YGF+ H+GY T +H + I+  G
Sbjct: 180 QTSIVKGDAKSISISAASIIAKVTRDRMMKELGKTYPEYGFEKHMGYGTKQHLEAIETYG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR TF P++++
Sbjct: 240 VLEEHRKTFAPIKDM 254


>gi|317052287|ref|YP_004113403.1| ribonuclease H [Desulfurispirillum indicum S5]
 gi|316947371|gb|ADU66847.1| Ribonuclease H [Desulfurispirillum indicum S5]
          Length = 201

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 82/190 (43%), Positives = 111/190 (58%), Gaps = 1/190 (0%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E +   R  +   +AG+DEVGRG LAGPV  AA+IL  +     I DSKK+S  +R  L 
Sbjct: 5   EFDQQWRNCHTQHIAGVDEVGRGPLAGPVCAAAVILPADFSDSRIRDSKKLSALQRRTLS 64

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           + I  S +  S+++   + ID  NI  AT  A++ A+  L + P   L+DG         
Sbjct: 65  DLIRHSCLAWSVATVDCEVIDTINILHATRLAMWQALSQLPMTPELLLVDGMDNSFFPAV 124

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   VIKGD++SLSIAAASI+AKV RD LM    ++YP YGF  H GY TA+H+Q I+E 
Sbjct: 125 RGEKVIKGDNLSLSIAAASIVAKVHRDELMEALDQRYPQYGFARHKGYGTAQHRQAIREH 184

Query: 192 GPSCIHRLTF 201
           G    HR +F
Sbjct: 185 GLCPQHRRSF 194


>gi|323480814|gb|ADX80253.1| ribonuclease HII [Enterococcus faecalis 62]
          Length = 255

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 91/196 (46%), Positives = 126/196 (64%), Gaps = 3/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E    +K    +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S KKRE LY
Sbjct: 61  QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY 120

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I   A+ I +  A    ID+ NI++AT  A+  A+++L   P   LID   +  D+P 
Sbjct: 121 NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLIDAMQL--DVPQ 178

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASIIAKVTRDRLM    + YP YGF ++ GY T +H   +++ 
Sbjct: 179 PQESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKY 238

Query: 192 GPSCIHRLTFRPLRNL 207
           G + IHR TF P++++
Sbjct: 239 GVTPIHRRTFAPIKDM 254


>gi|153003177|ref|YP_001377502.1| ribonuclease HII [Anaeromyxobacter sp. Fw109-5]
 gi|152026750|gb|ABS24518.1| Ribonuclease H [Anaeromyxobacter sp. Fw109-5]
          Length = 338

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 84/196 (42%), Positives = 120/196 (61%), Gaps = 2/196 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +  +  VAG+DE G   LAGPVV  A IL  +  P GI+DSK++  ++RE L
Sbjct: 89  LRYEGELWDGGVTLVAGVDEAGMAPLAGPVVAGACILPRDYRPRGIDDSKQLDRRERERL 148

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            E I ++A+  +++ A  + ID+ NI++A L A+  AV+ L   P   L+D R +PE L 
Sbjct: 149 AEDIKANAVCWAVARAEVEEIDRLNIYRAGLLALTRAVQALTPAPGHVLVDARKLPE-LR 207

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +I GD++SL+IAAASI+AK TRD LM      YP YGF +H GYPTA+H Q ++ 
Sbjct: 208 LPQTPIIHGDALSLTIAAASILAKTTRDELMGELDALYPGYGFCNHKGYPTAEHFQALER 267

Query: 191 KGPSCIHRLTFRPLRN 206
            G   IHR +F+P+R 
Sbjct: 268 LGACPIHRRSFQPVRE 283


>gi|147678043|ref|YP_001212258.1| ribonuclease HII [Pelotomaculum thermopropionicum SI]
 gi|189043637|sp|A5D1I3|RNH2_PELTS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|146274140|dbj|BAF59889.1| ribonuclease HII [Pelotomaculum thermopropionicum SI]
          Length = 266

 Score =  248 bits (633), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 86/201 (42%), Positives = 119/201 (59%), Gaps = 4/201 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHK 66
           +  +  E  +  +   PVAG+DE GRG LAGPVV AA+IL P  +    G+NDSKK++  
Sbjct: 58  QKLYIYENSLIAQGYSPVAGVDEAGRGPLAGPVVAAAVILPPVADLALAGLNDSKKLNPS 117

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           KR EL  +I   A+  S   ++ + I   NIH A+L A+  AV  L++ P   L+DG  I
Sbjct: 118 KRAELAARIKKVALAWSAGISTVEEIFNENIHAASLTAMRRAVLKLKIRPAYLLVDGYRI 177

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
              L     A+  GD +S S+AAASI+AKV RDRLM   H +YP YGF+ H GY T +H 
Sbjct: 178 -SRLELPQLALTGGDGLSASVAAASILAKVLRDRLMDFYHVQYPQYGFNRHKGYATPEHL 236

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
             ++  GP  +HR  +RP++N
Sbjct: 237 AALERYGPCPLHRAGYRPVKN 257


>gi|332530821|ref|ZP_08406747.1| ribonuclease HII [Hylemonella gracilis ATCC 19624]
 gi|332039733|gb|EGI76133.1| ribonuclease HII [Hylemonella gracilis ATCC 19624]
          Length = 196

 Score =  248 bits (633), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 79/182 (43%), Positives = 116/182 (63%), Gaps = 2/182 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82
             +AG+DE GRG LAGPVV AA+ILD  N   G++DSKK++  +RE LY++I + A+  +
Sbjct: 6   GLLAGVDEAGRGPLAGPVVAAAVILDELNPIEGLDDSKKLTAARRERLYDEIRAKALCCA 65

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           ++ AS + ID  NI +ATL A+  AV  L++ P   L+DG  +P  L   + AV++GD++
Sbjct: 66  VAEASVEEIDALNILQATLLAMRRAVGGLRLKPSKVLVDGNQLPR-LSVLSEAVVRGDAL 124

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +I+AASI+AKV RDR      +++P YGF +H GY TA H   +   G    HR +F 
Sbjct: 125 VPAISAASILAKVHRDRWCLSYDREFPQYGFAAHKGYGTAVHLAALHMHGACPQHRRSFA 184

Query: 203 PL 204
           P+
Sbjct: 185 PV 186


>gi|270308093|ref|YP_003330151.1| ribonuclease HII [Dehalococcoides sp. VS]
 gi|270153985|gb|ACZ61823.1| ribonuclease HII [Dehalococcoides sp. VS]
          Length = 211

 Score =  248 bits (633), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 83/202 (41%), Positives = 112/202 (55%), Gaps = 5/202 (2%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHK 66
           P +  E  + ++    +AG+DE GRG LAGPVV  A+I+ P         + DSK ++ +
Sbjct: 7   PGWAEEKQLWKQGFSSIAGLDEAGRGCLAGPVVAGAVIMPPRLKGEWVAMVRDSKVLTLE 66

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           KRE LY  I S AI   +    +  ID   I  AT  A+  AVE+L   P   L+D   +
Sbjct: 67  KREYLYCHIVSMAISFGVGVVDNTQIDCLGIAPATRLAMKQAVEHLDCRPDYLLVDYLKL 126

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P D+P     ++ GD++  SIA ASIIAKV+RDRLM      YP Y    H GY TA H 
Sbjct: 127 P-DIPLPQKGIVDGDALCFSIACASIIAKVSRDRLMCELDATYPGYHLAKHKGYGTALHM 185

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
           + I +KG S IHR TF PL+++
Sbjct: 186 ECISQKGISPIHRRTFAPLKSM 207


>gi|319892260|ref|YP_004149135.1| Ribonuclease HII [Staphylococcus pseudintermedius HKU10-03]
 gi|317161956|gb|ADV05499.1| Ribonuclease HII [Staphylococcus pseudintermedius HKU10-03]
          Length = 261

 Score =  248 bits (633), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 87/197 (44%), Positives = 123/197 (62%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +E E ++  +    + G+DEVGRG LAGPVV +A+IL P +   GINDSK++S  +R  L
Sbjct: 63  YETE-ILNVQPEALICGVDEVGRGPLAGPVVASAVILQPGHDFVGINDSKQLSVTQRNLL 121

Query: 72  YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
              +       ++  A+ + ID+HNI+ AT  A+Y A+ENL V P   LID  ++ + L 
Sbjct: 122 NTSLKEQVRAWAVGVATPEEIDEHNIYVATQIAMYRAIENLSVTPTHYLIDAMTL-DHLT 180

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               A+IKGD+ S+SIAAASIIAKV RD LM    K+YP Y F  + GY T KH   +K+
Sbjct: 181 APQQAIIKGDAKSVSIAAASIIAKVYRDDLMAEYAKQYPGYDFAQNAGYGTQKHLDGLKQ 240

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR TF P++++
Sbjct: 241 YGVTTIHRKTFEPIKSM 257


>gi|121608424|ref|YP_996231.1| ribonuclease HII [Verminephrobacter eiseniae EF01-2]
 gi|189043674|sp|A1WHV6|RNH2_VEREI RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|121553064|gb|ABM57213.1| Ribonuclease H [Verminephrobacter eiseniae EF01-2]
          Length = 209

 Score =  248 bits (633), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 79/182 (43%), Positives = 113/182 (62%), Gaps = 2/182 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DE GRG LAGPV+ AA++LD      G+ DSKK++  +R  L+++I + A+  S
Sbjct: 20  GLVAGVDEAGRGPLAGPVMAAAVMLDERQPIMGLADSKKLTPARRASLFDEIRAKALCYS 79

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+ AS Q ID  NI +ATL A+  AV+ L++ P   L+DG  +P  L   A A++KGD++
Sbjct: 80  IAQASVQEIDALNILQATLLAMRRAVQGLRLRPALVLVDGNRLPR-LDIPAQAIVKGDAL 138

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +I+AASI+AKV RD      H ++P YGF  H GY TA H   ++  G    HR +F 
Sbjct: 139 QPAISAASILAKVQRDHWCVQVHAEFPQYGFAGHKGYGTAMHLAALRAHGACIHHRRSFA 198

Query: 203 PL 204
           P+
Sbjct: 199 PV 200


>gi|260172441|ref|ZP_05758853.1| ribonuclease HII [Bacteroides sp. D2]
 gi|315920736|ref|ZP_07916976.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694611|gb|EFS31446.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 200

 Score =  248 bits (633), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 76/179 (42%), Positives = 105/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++ K+R  L E I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEAIAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + ID+ NI +A+  A++ AV+ L   P+  LIDG    +        V+KGD   LS
Sbjct: 73  VSPEEIDEINILRASFLAMHRAVDQLSTRPQHLLIDGNRFTKYPGVPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H+++P Y +D + GYPT KH+  I E+G +  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTFNLL 191


>gi|298480557|ref|ZP_06998754.1| ribonuclease HII [Bacteroides sp. D22]
 gi|295086253|emb|CBK67776.1| RNase HII [Bacteroides xylanisolvens XB1A]
 gi|298273378|gb|EFI14942.1| ribonuclease HII [Bacteroides sp. D22]
          Length = 200

 Score =  248 bits (633), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 77/179 (43%), Positives = 105/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK++S K+R  L E I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLSEKQRYALREVIEKEAIAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + ID+ NI +A+  A++ AV+ L   P+  LIDG    +        V+KGD   LS
Sbjct: 73  VSPEEIDEINILRASFLAMHRAVDQLTTRPQHLLIDGNRFTKYPDIPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H+++P Y +D + GYPT KH+  I E+G +  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTFNLL 191


>gi|323464643|gb|ADX76796.1| ribonuclease HII [Staphylococcus pseudintermedius ED99]
          Length = 261

 Score =  248 bits (633), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 87/197 (44%), Positives = 123/197 (62%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +E E ++  +    + G+DEVGRG LAGPVV +A+IL P +   GINDSK++S  +R  L
Sbjct: 63  YETE-ILNVQPEALICGVDEVGRGPLAGPVVASAVILQPGHDFVGINDSKQLSVTQRNLL 121

Query: 72  YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
              +       ++  A+ + ID+HNI+ AT  A+Y A+ENL V P   LID  ++ + L 
Sbjct: 122 NTSLKEQVRAWAVGVATPEEIDEHNIYVATQIAMYRAIENLSVTPTHYLIDAMTL-DHLT 180

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               A+IKGD+ S+SIAAASIIAKV RD LM    K+YP Y F  + GY T KH   +K+
Sbjct: 181 APQQAIIKGDAKSVSIAAASIIAKVYRDDLMAEYAKQYPGYDFAQNAGYGTQKHLDGLKQ 240

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR TF P++++
Sbjct: 241 YGVTTIHRKTFEPIKSM 257


>gi|59802108|ref|YP_208820.1| hypothetical protein NGO1789 [Neisseria gonorrhoeae FA 1090]
 gi|239997979|ref|ZP_04717903.1| ribonuclease HII [Neisseria gonorrhoeae 35/02]
 gi|240015043|ref|ZP_04721956.1| ribonuclease HII [Neisseria gonorrhoeae DGI18]
 gi|240017491|ref|ZP_04724031.1| ribonuclease HII [Neisseria gonorrhoeae FA6140]
 gi|240081632|ref|ZP_04726175.1| ribonuclease HII [Neisseria gonorrhoeae FA19]
 gi|240113913|ref|ZP_04728403.1| ribonuclease HII [Neisseria gonorrhoeae MS11]
 gi|240116645|ref|ZP_04730707.1| ribonuclease HII [Neisseria gonorrhoeae PID18]
 gi|240118868|ref|ZP_04732930.1| ribonuclease HII [Neisseria gonorrhoeae PID1]
 gi|240122111|ref|ZP_04735073.1| ribonuclease HII [Neisseria gonorrhoeae PID24-1]
 gi|240124723|ref|ZP_04737609.1| ribonuclease HII [Neisseria gonorrhoeae SK-92-679]
 gi|240129082|ref|ZP_04741743.1| ribonuclease HII [Neisseria gonorrhoeae SK-93-1035]
 gi|260439594|ref|ZP_05793410.1| ribonuclease HII [Neisseria gonorrhoeae DGI2]
 gi|73917827|sp|Q5F5X9|RNH2_NEIG1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|59719003|gb|AAW90408.1| putative ribonuclease HII [Neisseria gonorrhoeae FA 1090]
          Length = 194

 Score =  248 bits (633), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 79/182 (43%), Positives = 105/182 (57%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG L G V  AA+IL       G+ DSKK+S KKR+ L E I   A+   +++
Sbjct: 6   AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKEQAVAWHVAA 65

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           ++ + I   NI  AT+ A+  AV  L   P    IDG  IPE L   A AV+KGDS  + 
Sbjct: 66  STPEEIASLNILHATMLAMKRAVYGLAARPEKIFIDGNRIPEHLGIPAEAVVKGDSKIIE 125

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AAS++AK  RD  M    ++ P YGFD H GY T +H + +K+ G    HR  F P+R
Sbjct: 126 ISAASVLAKTARDAEMYALAQRRPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185

Query: 206 NL 207
           NL
Sbjct: 186 NL 187


>gi|150003938|ref|YP_001298682.1| ribonuclease HII [Bacteroides vulgatus ATCC 8482]
 gi|254880820|ref|ZP_05253530.1| ribonuclease HII [Bacteroides sp. 4_3_47FAA]
 gi|294775094|ref|ZP_06740623.1| ribonuclease HII [Bacteroides vulgatus PC510]
 gi|319639832|ref|ZP_07994561.1| ribonuclease HII [Bacteroides sp. 3_1_40A]
 gi|166225169|sp|A6L046|RNH2_BACV8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|149932362|gb|ABR39060.1| ribonuclease HII [Bacteroides vulgatus ATCC 8482]
 gi|254833613|gb|EET13922.1| ribonuclease HII [Bacteroides sp. 4_3_47FAA]
 gi|294451138|gb|EFG19609.1| ribonuclease HII [Bacteroides vulgatus PC510]
 gi|317388496|gb|EFV69346.1| ribonuclease HII [Bacteroides sp. 3_1_40A]
          Length = 201

 Score =  248 bits (633), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 74/179 (41%), Positives = 106/179 (59%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++  +R  L E +   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPVDFKNELLNDSKQLTEHQRYALREIVEREALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + ID+ NI  A+  A++ AV+ L++ P+  LIDG    +        V+KGD   LS
Sbjct: 73  VTPEEIDEINILNASFLAMHRAVDQLKIRPQHLLIDGNRFKKYQDLPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   HK+YP Y ++S+ GYPT KH+  I+E G +  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNELHKEYPFYDWNSNKGYPTKKHRAAIREHGTTPYHRMTFNLL 191


>gi|150010125|ref|YP_001304868.1| ribonuclease HII [Parabacteroides distasonis ATCC 8503]
 gi|255012614|ref|ZP_05284740.1| ribonuclease HII [Bacteroides sp. 2_1_7]
 gi|256838948|ref|ZP_05544458.1| ribonuclease HII [Parabacteroides sp. D13]
 gi|298374495|ref|ZP_06984453.1| ribonuclease HII [Bacteroides sp. 3_1_19]
 gi|301308175|ref|ZP_07214129.1| ribonuclease HII [Bacteroides sp. 20_3]
 gi|166226634|sp|A6LHT2|RNH2_PARD8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|149938549|gb|ABR45246.1| ribonuclease HII [Parabacteroides distasonis ATCC 8503]
 gi|256739867|gb|EEU53191.1| ribonuclease HII [Parabacteroides sp. D13]
 gi|298268863|gb|EFI10518.1| ribonuclease HII [Bacteroides sp. 3_1_19]
 gi|300833645|gb|EFK64261.1| ribonuclease HII [Bacteroides sp. 20_3]
          Length = 199

 Score =  248 bits (633), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 103/185 (55%), Gaps = 2/185 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK++S KKR +L   I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGAVFAAAVILPEDFKNEDLNDSKQLSEKKRYKLRPVIEREAIAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + IDK NI KA+  A++ A+E L+V P   LIDG             V+KGD   LS
Sbjct: 73  VSPEEIDKINILKASFLAMHRAIEQLKVRPEHLLIDGNRFTPYPDIPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL- 204
           IAAASI+AK  RD  M     +YP Y +  + GYPT  H++ I+  G +  HR TF  L 
Sbjct: 133 IAAASILAKTYRDDYMNELALEYPAYHWLDNKGYPTKVHREAIRTHGITPYHRKTFTLLP 192

Query: 205 RNLSV 209
             L++
Sbjct: 193 EQLTL 197


>gi|301063461|ref|ZP_07203993.1| ribonuclease HII [delta proteobacterium NaphS2]
 gi|300442400|gb|EFK06633.1| ribonuclease HII [delta proteobacterium NaphS2]
          Length = 215

 Score =  248 bits (633), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 85/208 (40%), Positives = 120/208 (57%), Gaps = 4/208 (1%)

Query: 1   MFCNSIPERPH--FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN 58
           +F N + + P   F  E   R      +AG+DE GRG LAGPVV AA+++       GI 
Sbjct: 9   LFPNDLSQCPQDPFYHETQARNSGYRLIAGVDEAGRGPLAGPVVAAAVMIPDGVRFSGIK 68

Query: 59  DSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117
           DSKK++ + R E + +I   A+   I   S  YI++ NI  A+L+A+  AV+ L   P  
Sbjct: 69  DSKKMTVRARIEAFHRIEGGALTFGIGVVSVSYIEEFNILNASLEAMLRAVQVLDPQPEM 128

Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
            L+DG         +   + KGD +S SI+AAS++AKV RDR+M   H  YP+YGFD + 
Sbjct: 129 ILVDGIHTVPT-SIKQKCLKKGDQVSRSISAASVLAKVYRDRIMAAYHHMYPEYGFDKNK 187

Query: 178 GYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           GY T +H + IKE GP  +HRLTF+ +R
Sbjct: 188 GYGTRQHLEAIKEHGPCPVHRLTFKGVR 215


>gi|119505680|ref|ZP_01627750.1| Ribonuclease H [marine gamma proteobacterium HTCC2080]
 gi|119458492|gb|EAW39597.1| Ribonuclease H [marine gamma proteobacterium HTCC2080]
          Length = 199

 Score =  248 bits (633), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 79/186 (42%), Positives = 114/186 (61%), Gaps = 3/186 (1%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-II 81
              +AG+DEVGRG LAG VV AA+I   +++P G+ DSKK++ K+RE+L   I SSA   
Sbjct: 14  YERIAGVDEVGRGPLAGDVVAAAVIFG-DSVPAGVTDSKKLTAKRREQLAVAIKSSARAW 72

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
            ++ AS   ID  NI +A+L A++ AV+ L + P   L+DG  +P     ++  +I GD+
Sbjct: 73  CVARASVAEIDSLNILQASLLAMHRAVDGLSLAPEFVLVDGNRLP-SWNYKSKPIIGGDA 131

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           + +SI AASI+AKV RD  M     +YP YGF  H GYPT +H   +   G +  HR +F
Sbjct: 132 LEVSIGAASILAKVQRDAEMVALDDEYPGYGFARHKGYPTREHMAALAALGVTPWHRKSF 191

Query: 202 RPLRNL 207
            P++ L
Sbjct: 192 APVKRL 197


>gi|134296014|ref|YP_001119749.1| ribonuclease HII [Burkholderia vietnamiensis G4]
 gi|166225178|sp|A4JF61|RNH2_BURVG RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|134139171|gb|ABO54914.1| Ribonuclease H [Burkholderia vietnamiensis G4]
          Length = 216

 Score =  248 bits (633), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 89/182 (48%), Positives = 119/182 (65%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83
            V G+DE GRG LAGPVV AA+ILDP     G++DSK +S KKR+ LY+ I + +    +
Sbjct: 29  IVCGVDEAGRGPLAGPVVAAAVILDPAQPIEGLDDSKALSAKKRDALYDLIVARSRAYCV 88

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS   ID  NI  AT+ A+  AVE L ++P  A IDG   P  L  +A A++ GD++ 
Sbjct: 89  ASASVDEIDTLNILHATMLAMKRAVEGLSLMPTLAQIDGNRCPT-LMVRAEAIVSGDALV 147

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H ++P YGFD H GY TAKH   ++E GP   HR +F P
Sbjct: 148 PSISAASILAKVTRDRMLVELHARHPVYGFDVHAGYGTAKHLAALREHGPCEAHRRSFAP 207

Query: 204 LR 205
           +R
Sbjct: 208 VR 209


>gi|224025200|ref|ZP_03643566.1| hypothetical protein BACCOPRO_01934 [Bacteroides coprophilus DSM
           18228]
 gi|224018436|gb|EEF76434.1| hypothetical protein BACCOPRO_01934 [Bacteroides coprophilus DSM
           18228]
          Length = 200

 Score =  248 bits (633), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 71/176 (40%), Positives = 105/176 (59%), Gaps = 1/176 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSKK++ K+R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPHDFRNELLNDSKKLTEKQRYALREVIEREALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + ID+ NI  A+  A++ A++ L++ P+  LIDG    +        ++KGD   LS
Sbjct: 73  VTPEEIDRINILNASFLAMHRAIDQLKIRPQHLLIDGNRFNKYADIPHTTIVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           IAAASI+AK  RD  M    ++YP Y + S+ GYPT KH++ IK+ G +  HR++F
Sbjct: 133 IAAASILAKTYRDDYMNRLAEEYPAYDWKSNKGYPTVKHREAIKKWGVTPYHRMSF 188


>gi|331085160|ref|ZP_08334246.1| hypothetical protein HMPREF0987_00549 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407943|gb|EGG87433.1| hypothetical protein HMPREF0987_00549 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 254

 Score =  247 bits (632), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 86/183 (46%), Positives = 117/183 (63%), Gaps = 2/183 (1%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           ++   + GIDEVGRG LAGPVV  A+IL  ++    +NDSKK++ K+REELYE I   A+
Sbjct: 67  RDAAFICGIDEVGRGPLAGPVVAGAVILPKDSQILYLNDSKKLTEKRREELYEVIMREAV 126

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ-AFAVIK 138
            + I   S   ID+ NI +AT +A++ AV  L V P   L D  +IP   P      +IK
Sbjct: 127 AVGIGIVSPARIDEINILQATYEAMWEAVGKLCVEPNVLLNDAVTIPMIPPHIVQVPIIK 186

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD+ S+SIAAASI+AKVTRDRLM    +  P YGF S+ GY +++H   +K+ GP+ IHR
Sbjct: 187 GDAKSVSIAAASIVAKVTRDRLMTEYEEVLPGYGFASNKGYGSSEHIAALKKYGPTPIHR 246

Query: 199 LTF 201
            +F
Sbjct: 247 RSF 249


>gi|255692962|ref|ZP_05416637.1| ribonuclease HII [Bacteroides finegoldii DSM 17565]
 gi|260621273|gb|EEX44144.1| ribonuclease HII [Bacteroides finegoldii DSM 17565]
          Length = 200

 Score =  247 bits (632), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 74/179 (41%), Positives = 106/179 (59%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++ K+R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPGDFKNELLNDSKQLTEKQRYALREVIQREAVAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + ID+ NI +A+  A++ AV+ L + P+  LIDG    +        ++KGD   LS
Sbjct: 73  VSPEEIDELNILRASFLAMHRAVDQLAIRPQHLLIDGNRFNKYPGIPHTTIVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H+++P Y +D + GYPT KH+  I E+G +  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTFNLL 191


>gi|226313196|ref|YP_002773090.1| ribonuclease HII [Brevibacillus brevis NBRC 100599]
 gi|226096144|dbj|BAH44586.1| ribonuclease HII [Brevibacillus brevis NBRC 100599]
          Length = 258

 Score =  247 bits (632), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 83/194 (42%), Positives = 109/194 (56%), Gaps = 2/194 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  + +K    + GIDEVGRG LAGPVV  A+ L  +    G+NDSKKI    RE   E
Sbjct: 64  YEKAMFDKGHQYIFGIDEVGRGPLAGPVVACAVCLPKDFYLPGLNDSKKIPVSTREAFCE 123

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   A+ + I       ID  NI  AT +A+  A++   + P   LID   +   + C+
Sbjct: 124 IIQRDALAVGIGIVDAARIDAINILAATKEAMKLAIQQASIAPDVLLIDAVQL-TGMNCE 182

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              +I GD+ S+SIAAASI+AKVTRDRLM    ++YP YGFD H GY T +H   I   G
Sbjct: 183 QVPIIGGDAKSVSIAAASIVAKVTRDRLMAQYAEEYPAYGFDKHAGYGTPEHLAAISRFG 242

Query: 193 PSCIHRLTFRPLRN 206
           P+ IHR TF  ++ 
Sbjct: 243 PTPIHRKTFTGVKE 256


>gi|329118448|ref|ZP_08247154.1| ribonuclease HII [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465494|gb|EGF11773.1| ribonuclease HII [Neisseria bacilliformis ATCC BAA-1200]
          Length = 198

 Score =  247 bits (632), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 79/182 (43%), Positives = 109/182 (59%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG LAG V  AA+IL  +    G+ DSKK+S KKR+ L  +I + A+  S++ 
Sbjct: 7   AGVDEAGRGPLAGSVFAAAVILPEHYDLPGLADSKKLSEKKRDALAAQIKAQAVAWSVAE 66

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A    I + NI  A + A+  AVENL V P+  LIDG  IP+ LP  A A++KGD+   +
Sbjct: 67  AGVDEIARLNILHAAMLAMRRAVENLAVPPQRILIDGNRIPDGLPAPAEAIVKGDAKIPA 126

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AK  RD  M     ++P YGF+ H GY T +H   ++  G    HR  F P+R
Sbjct: 127 ISAASILAKTARDAQMYALAARHPQYGFERHKGYGTPEHLAALRRHGALPEHRRGFAPVR 186

Query: 206 NL 207
            +
Sbjct: 187 EI 188


>gi|77165488|ref|YP_344013.1| ribonuclease H [Nitrosococcus oceani ATCC 19707]
 gi|254433570|ref|ZP_05047078.1| ribonuclease HII [Nitrosococcus oceani AFC27]
 gi|97189090|sp|Q3J9L3|RNH2_NITOC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|76883802|gb|ABA58483.1| RNase HII [Nitrosococcus oceani ATCC 19707]
 gi|207089903|gb|EDZ67174.1| ribonuclease HII [Nitrosococcus oceani AFC27]
          Length = 201

 Score =  247 bits (632), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 81/185 (43%), Positives = 110/185 (59%), Gaps = 2/185 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG LAGPV+  A+ILDP     G+ DSK+++   RE L   I + A+  +
Sbjct: 15  QRVAGVDEVGRGPLAGPVIAGAVILDPECPISGVKDSKQLTAPARERLAALIQAQAVAWA 74

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A    ID+ NI +A+L A+  A+  L V+P   L+DG+  P  + C   A++KGD  
Sbjct: 75  LGRAEAAEIDQFNILQASLLAMERAISALSVVPDLVLVDGKHCPPTV-CPVRAIVKGDQQ 133

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            ++I AASI+AKV RD  M    + YP YGF  H GYPT  H   +K  GP  IHR +FR
Sbjct: 134 IMAIGAASIVAKVARDAEMIAFEESYPGYGFGIHKGYPTRAHLAALKALGPCSIHRRSFR 193

Query: 203 PLRNL 207
           P+R  
Sbjct: 194 PVRRF 198


>gi|262375455|ref|ZP_06068688.1| ribonuclease HII [Acinetobacter lwoffii SH145]
 gi|262309709|gb|EEY90839.1| ribonuclease HII [Acinetobacter lwoffii SH145]
          Length = 195

 Score =  247 bits (632), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 83/183 (45%), Positives = 114/183 (62%), Gaps = 1/183 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           +AG+DE GRG L G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I   A+    +
Sbjct: 3   IAGVDEAGRGPLVGSVVAAAVILDPNNPIEGLNDSKKLTEKKREKLFIEIQEKALAWAIA 62

Query: 86  ASHQYI-DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            +     D+HNI +A+L A+  AVE L V P   L+DG  IP+ L     AV+ GD++  
Sbjct: 63  EASAAEIDEHNILQASLLAMRRAVEALPVQPEHVLVDGNKIPQGLAMSCDAVVGGDALHA 122

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AKVTRD  M    +K+P +GF  H GYPT  H + I   G    HR +F P+
Sbjct: 123 EISAASILAKVTRDHQMIEMDQKHPQFGFAKHKGYPTKAHFEAIALHGVIDEHRRSFGPV 182

Query: 205 RNL 207
           + +
Sbjct: 183 KKV 185


>gi|319793969|ref|YP_004155609.1| ribonuclease h [Variovorax paradoxus EPS]
 gi|315596432|gb|ADU37498.1| Ribonuclease H [Variovorax paradoxus EPS]
          Length = 238

 Score =  247 bits (632), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 82/182 (45%), Positives = 118/182 (64%), Gaps = 2/182 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82
             +AG+DE GRG LAGPVV AA+ILD      G+ DSK ++  +RE L+++I + A+  S
Sbjct: 20  GLLAGVDEAGRGPLAGPVVAAAVILDDTRPIRGLADSKTLTALQRERLHDQILAKALCCS 79

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+ AS + ID HNI +AT+ A+  AVE L++ P   L+DG  +P  L   A AV+KGD++
Sbjct: 80  IAQASVEEIDTHNILQATMIAMRRAVEGLRLKPAKVLVDGNRLPT-LDVLAEAVVKGDAL 138

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +I+AASI+AKV RDRL    H ++P YGF  H GY T +H + +++ G    HR +F 
Sbjct: 139 VKAISAASILAKVHRDRLCEQLHTEFPHYGFAGHKGYGTPEHLEALQKHGACVHHRRSFS 198

Query: 203 PL 204
           P+
Sbjct: 199 PV 200


>gi|313884900|ref|ZP_07818652.1| ribonuclease HII [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619591|gb|EFR31028.1| ribonuclease HII [Eremococcus coleocola ACS-139-V-Col8]
          Length = 279

 Score =  247 bits (632), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 87/197 (44%), Positives = 121/197 (61%), Gaps = 5/197 (2%)

Query: 14  LEAMVRE-KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREEL 71
            E  + + ++   +AGIDEVGRG LAGPVV AA+IL  +   F GINDSK++SH++R   
Sbjct: 78  YENDLWQNQSFKYIAGIDEVGRGPLAGPVVTAAVILPQDCAAFIGINDSKQLSHQQRVSY 137

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            E I  +A+  SI+  S Q ID+ NI++AT   +  AV NL + P   L+D   I   +P
Sbjct: 138 AEIIKENALAYSIAIGSAQLIDQVNIYQATRQMMVKAVANLAIQPDYLLLDAMQIESSIP 197

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD  SLSIAAASIIAKV RD++M     ++P Y F  + GY T  H   + E
Sbjct: 198 --QRSIIKGDQKSLSIAAASIIAKVYRDQIMDQYALEFPYYDFQHNKGYGTQNHLAGLNE 255

Query: 191 KGPSCIHRLTFRPLRNL 207
            G S IHR +F P++++
Sbjct: 256 FGYSPIHRRSFEPVKSM 272


>gi|90415807|ref|ZP_01223740.1| Ribonuclease HII (RNase HII) [marine gamma proteobacterium
           HTCC2207]
 gi|90332181|gb|EAS47378.1| Ribonuclease HII (RNase HII) [marine gamma proteobacterium
           HTCC2207]
          Length = 204

 Score =  247 bits (632), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 83/186 (44%), Positives = 112/186 (60%), Gaps = 2/186 (1%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
           N+  +AG+DEVGRG LAG VV AA+IL  N+   G+ DSK +S ++RE LY  ITS A+ 
Sbjct: 9   NIKFLAGVDEVGRGPLAGDVVTAAVILPANHGIEGLADSKALSSRQRENLYADITSRALC 68

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            S++  S   ID+ NI +ATL A+  AV  L   P    +DG  +P+    +  AV+KGD
Sbjct: 69  WSVARCSVAEIDRFNILQATLMAMRRAVMGLSQQPDYVAVDGNRLPQ-WEYRGEAVVKGD 127

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
                I+AASIIAKV RD  M+     YP YGF ++ GY T +H + +   G + IHR T
Sbjct: 128 GRVECISAASIIAKVVRDAEMKAFDITYPGYGFAANKGYGTPQHLEALSRIGATPIHRRT 187

Query: 201 FRPLRN 206
           F P+R 
Sbjct: 188 FAPVRE 193


>gi|57234417|ref|YP_181512.1| ribonuclease HII [Dehalococcoides ethenogenes 195]
 gi|97182406|sp|Q3Z8D7|RNH2_DEHE1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|57224865|gb|AAW39922.1| ribonuclease HII [Dehalococcoides ethenogenes 195]
          Length = 211

 Score =  247 bits (632), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 83/202 (41%), Positives = 113/202 (55%), Gaps = 5/202 (2%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHK 66
           P +  E  + ++    +AG+DE GRG LAGPVV  A+I+ P    +    + DSK ++ +
Sbjct: 7   PGWAEEKHLWKQGFSSIAGLDEAGRGCLAGPVVAGAVIMPPRLKGDWVAMVRDSKVLTPE 66

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           KRE LY  I S AI   +    +  ID   I  AT  A+  AVE+L   P   L+D   +
Sbjct: 67  KREYLYCHIVSMAISFGVGVVDNTQIDCLGIAPATRLAMKQAVEHLDCRPDFLLVDYLKL 126

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P D+P     ++ GD++  SIA ASIIAKV+RDRLM      YP Y    H GY TA H 
Sbjct: 127 P-DIPLPQKGIVDGDALCFSIACASIIAKVSRDRLMCELEATYPGYHLAKHKGYGTALHM 185

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
           + I +KG S IHR TF PL+++
Sbjct: 186 ECISQKGISPIHRRTFAPLKSM 207


>gi|53711581|ref|YP_097573.1| ribonuclease HII [Bacteroides fragilis YCH46]
 gi|81383847|sp|Q64ZN7|RNH2_BACFR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|52214446|dbj|BAD47039.1| ribonuclease HII [Bacteroides fragilis YCH46]
          Length = 201

 Score =  247 bits (632), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 76/179 (42%), Positives = 103/179 (57%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK++S K+R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFENELLNDSKQLSEKQRYALREVIERDAVAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + IDK NI  A+  A++ AV+ L+  P+  LIDG    +        VIKGD   LS
Sbjct: 73  VSPEEIDKINILNASFLAMHRAVDRLKTRPQHLLIDGNRFKKYPDIPHTTVIKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H+++P Y ++ + GYPT KH+  I   G +  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNRLHQEFPCYDWEHNKGYPTKKHRAAIAGHGTTPYHRMTFNLL 191


>gi|160883918|ref|ZP_02064921.1| hypothetical protein BACOVA_01892 [Bacteroides ovatus ATCC 8483]
 gi|237720405|ref|ZP_04550886.1| ribonuclease HII [Bacteroides sp. 2_2_4]
 gi|156110648|gb|EDO12393.1| hypothetical protein BACOVA_01892 [Bacteroides ovatus ATCC 8483]
 gi|229450156|gb|EEO55947.1| ribonuclease HII [Bacteroides sp. 2_2_4]
          Length = 200

 Score =  247 bits (632), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 76/179 (42%), Positives = 105/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++ K+R  L E I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEAIAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + ID+ NI +A+  A++ AV+ L   P+  LIDG    +        V+KGD   LS
Sbjct: 73  VSPEEIDEINILRASFLAMHRAVDQLTTRPQHLLIDGNRFTKYPGVPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H+++P Y +D + GYPT KH+  I E+G +  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTFNLL 191


>gi|83313088|ref|YP_423352.1| ribonuclease HII [Magnetospirillum magneticum AMB-1]
 gi|11387098|sp|Q50412|RNH2_MAGMM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|1054584|dbj|BAA06983.1| unnamed protein product [Magnetospirillum magneticum AMB-1]
 gi|82947929|dbj|BAE52793.1| Ribonuclease HII [Magnetospirillum magneticum AMB-1]
          Length = 201

 Score =  247 bits (632), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 88/200 (44%), Positives = 121/200 (60%), Gaps = 9/200 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKIS 64
            P   LE  +       V GIDEVGRG LAGPVV AA+ILDP  +P      ++DSKK+S
Sbjct: 1   MPDLALEFEIG----GIVCGIDEVGRGPLAGPVVAAAVILDPARLPKTLLERLDDSKKLS 56

Query: 65  HKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
            + REEL E + ++AI+    AS + ID+ NI +AT  A+  A + L      AL+DG  
Sbjct: 57  KRNREELAELVPATAILGFGEASVEEIDRINILQATFLAMRRAYDALGRECAHALVDGNR 116

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
            P  LPC    V+ GD ISLSIAAAS++AKV RD +M    + +P++G++ + GY TA+H
Sbjct: 117 -PPGLPCPVRCVVGGDGISLSIAAASVVAKVRRDAMMADLARAHPEFGWERNAGYGTAEH 175

Query: 185 QQVIKEKGPSCIHRLTFRPL 204
              +K  GP+  HR +F P+
Sbjct: 176 LDALKRLGPTPHHRRSFAPV 195


>gi|30263840|ref|NP_846217.1| ribonuclease HII [Bacillus anthracis str. Ames]
 gi|47529265|ref|YP_020614.1| ribonuclease HII [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186687|ref|YP_029939.1| ribonuclease HII [Bacillus anthracis str. Sterne]
 gi|65321164|ref|ZP_00394123.1| COG0164: Ribonuclease HII [Bacillus anthracis str. A2012]
 gi|167642027|ref|ZP_02400257.1| ribonuclease HII [Bacillus anthracis str. A0193]
 gi|170689655|ref|ZP_02880835.1| ribonuclease HII [Bacillus anthracis str. A0465]
 gi|170709356|ref|ZP_02899770.1| ribonuclease HII [Bacillus anthracis str. A0389]
 gi|177655996|ref|ZP_02937123.1| ribonuclease HII [Bacillus anthracis str. A0174]
 gi|227813255|ref|YP_002813264.1| ribonuclease HII [Bacillus anthracis str. CDC 684]
 gi|229600963|ref|YP_002868074.1| ribonuclease HII [Bacillus anthracis str. A0248]
 gi|254683456|ref|ZP_05147316.1| ribonuclease HII [Bacillus anthracis str. CNEVA-9066]
 gi|254721977|ref|ZP_05183766.1| ribonuclease HII [Bacillus anthracis str. A1055]
 gi|254735875|ref|ZP_05193581.1| ribonuclease HII [Bacillus anthracis str. Western North America
           USA6153]
 gi|254759311|ref|ZP_05211336.1| ribonuclease HII [Bacillus anthracis str. Australia 94]
 gi|39932347|sp|Q81WJ9|RNH2_BACAN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807964|sp|C3P5N8|RNH2_BACAA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807965|sp|C3L790|RNH2_BACAC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|30258484|gb|AAP27703.1| ribonuclease HII [Bacillus anthracis str. Ames]
 gi|47504413|gb|AAT33089.1| ribonuclease HII [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180614|gb|AAT55990.1| ribonuclease HII [Bacillus anthracis str. Sterne]
 gi|167510007|gb|EDR85423.1| ribonuclease HII [Bacillus anthracis str. A0193]
 gi|170125730|gb|EDS94643.1| ribonuclease HII [Bacillus anthracis str. A0389]
 gi|170666379|gb|EDT17162.1| ribonuclease HII [Bacillus anthracis str. A0465]
 gi|172079895|gb|EDT65003.1| ribonuclease HII [Bacillus anthracis str. A0174]
 gi|227003723|gb|ACP13466.1| ribonuclease HII [Bacillus anthracis str. CDC 684]
 gi|229265371|gb|ACQ47008.1| ribonuclease HII [Bacillus anthracis str. A0248]
          Length = 257

 Score =  247 bits (632), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S  KRE  Y 
Sbjct: 62  YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYG 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I + AI I +   S Q ID+ NI++AT  A+  A+ NL   P   LID   +P   P  
Sbjct: 122 EIKAKAIAIGVGIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPA--PIP 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G
Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 240 VLEEHRKSFAPIKDM 254


>gi|302384139|ref|YP_003819962.1| ribonuclease H [Brevundimonas subvibrioides ATCC 15264]
 gi|302194767|gb|ADL02339.1| Ribonuclease H [Brevundimonas subvibrioides ATCC 15264]
          Length = 213

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 88/199 (44%), Positives = 117/199 (58%), Gaps = 2/199 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P   LE ++  +    V G+DE GRG  AGPV  AA+IL+ +++P GI+DSK ++  +RE
Sbjct: 13  PTMALETLLASRVGGRVCGVDEAGRGPWAGPVSAAAVILNADDLPVGIDDSKALTAARRE 72

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            L  +I + A+   +  AS + ID  NI  AT  A+  A+E L V P +AL+DG      
Sbjct: 73  ALEIEIKARAVAWGVGFASVEEIDALNILHATGLAMCRAIEALSVSPVAALVDGN-YRFR 131

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LPC    V+ GD +SLSIAAASI+AK  RDRLM      YP YGF  H GY    H Q +
Sbjct: 132 LPCDVETVVGGDGLSLSIAAASILAKTARDRLMIEMDDLYPGYGFAGHKGYNAPVHSQAL 191

Query: 189 KEKGPSCIHRLTFRPLRNL 207
           +  GP  IHR T+ P+R L
Sbjct: 192 QTMGPCPIHRRTWAPIRAL 210


>gi|60679832|ref|YP_209976.1| ribonuclease HII [Bacteroides fragilis NCTC 9343]
 gi|253564368|ref|ZP_04841825.1| ribonuclease HII [Bacteroides sp. 3_2_5]
 gi|265764964|ref|ZP_06093239.1| ribonuclease HII [Bacteroides sp. 2_1_16]
 gi|81317095|sp|Q5LIL2|RNH2_BACFN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|60491266|emb|CAH06014.1| putative ribonuclease HII [Bacteroides fragilis NCTC 9343]
 gi|251948144|gb|EES88426.1| ribonuclease HII [Bacteroides sp. 3_2_5]
 gi|263254348|gb|EEZ25782.1| ribonuclease HII [Bacteroides sp. 2_1_16]
 gi|301161352|emb|CBW20892.1| putative ribonuclease HII [Bacteroides fragilis 638R]
          Length = 201

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 76/179 (42%), Positives = 103/179 (57%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK++S K+R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFENELLNDSKQLSEKQRYALREVIERDAVAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + IDK NI  A+  A++ AV+ L+  P+  LIDG    +        VIKGD   LS
Sbjct: 73  VSPEEIDKINILNASFLAMHRAVDRLKTRPQHLLIDGNRFKKYPDIPHTTVIKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H+++P Y ++ + GYPT KH+  I   G +  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNKLHQEFPCYDWEHNKGYPTKKHRAAIAGHGTTPYHRMTFNLL 191


>gi|218904966|ref|YP_002452800.1| ribonuclease HII [Bacillus cereus AH820]
 gi|226736812|sp|B7JJB6|RNH2_BACC0 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|218537806|gb|ACK90204.1| ribonuclease HII [Bacillus cereus AH820]
          Length = 257

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S  KRE  Y 
Sbjct: 62  YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYG 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I + AI I +   S Q ID+ NI++AT  A+  A+ NL   P   LID   +P   P  
Sbjct: 122 EIKAKAIAIGVXIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPT--PIP 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G
Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 240 VLEEHRKSFAPIKDM 254


>gi|294789420|ref|ZP_06754657.1| ribonuclease HII [Simonsiella muelleri ATCC 29453]
 gi|294482633|gb|EFG30323.1| ribonuclease HII [Simonsiella muelleri ATCC 29453]
          Length = 201

 Score =  247 bits (631), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 81/182 (44%), Positives = 105/182 (57%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG L G V  AA+IL  +     + DSKK+S KKR++L E I + AI  SI+S
Sbjct: 11  AGVDEAGRGPLVGSVFAAAVILPAHYDLPDLTDSKKLSEKKRDKLAELIKNQAIAWSIAS 70

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           AS   I ++NI  AT+ A+  AV  L   P    IDG  +P +L   A AV+KGDS    
Sbjct: 71  ASPAEIVQYNILYATMLAMKRAVLGLNQKPEKVWIDGNRVPPELGIDAQAVVKGDSKIAQ 130

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AK  RD  M      YP YGF+ H GY TA H   +++ G    HR  F P++
Sbjct: 131 ISAASILAKTARDAEMYALATLYPQYGFEKHKGYGTAAHLAALRQYGVLPEHRADFSPVK 190

Query: 206 NL 207
            L
Sbjct: 191 AL 192


>gi|56478865|ref|YP_160454.1| ribonuclease HII [Aromatoleum aromaticum EbN1]
 gi|81356536|sp|Q5NZG1|RNH2_AZOSE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|56314908|emb|CAI09553.1| Ribonuclease HII [Aromatoleum aromaticum EbN1]
          Length = 204

 Score =  247 bits (631), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 81/186 (43%), Positives = 109/186 (58%), Gaps = 2/186 (1%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81
           +  + G+DE GRG LAG VV AA+ILDP     G+NDSKK++ + RE L   I   AI  
Sbjct: 7   IGLICGVDEAGRGPLAGSVVAAAVILDPARPIDGLNDSKKLTERARERLAPLIRERAIAW 66

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           +++ AS + ID+ NI  AT+ A+  AV  L  +P    +DG   P  L   A AV++GD+
Sbjct: 67  AVAEASVEEIDRLNILHATMLAMQRAVAALGCVPDLVRVDGNRCPP-LAVPAEAVVRGDA 125

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
              +IAAASI+AK  RD  M     +YP YGF SH GYPT +H   ++  G    HR +F
Sbjct: 126 TVPAIAAASILAKTVRDAQMIALDGEYPAYGFASHKGYPTPEHFIALRRHGVVACHRRSF 185

Query: 202 RPLRNL 207
            P+R L
Sbjct: 186 APVREL 191


>gi|332994191|gb|AEF04246.1| ribonuclease HII [Alteromonas sp. SN2]
          Length = 191

 Score =  247 bits (631), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 85/184 (46%), Positives = 112/184 (60%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP N   G+ DSKK+S KKR  L  +I + A+   I
Sbjct: 4   LIAGVDEVGRGPLVGDVVTAAVILDPANPIVGLTDSKKLSEKKRIALAAEIKAKALYWHI 63

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A+ + ID  NI  AT+ A+  AVE L V P    +DG  +P D P  A AV+KGDS+ 
Sbjct: 64  GRATPEEIDTLNILHATMLAMKRAVEGLAVTPDFVRVDGNRLP-DWPYAAEAVVKGDSLY 122

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASIIAKV RD  M    + +P+YGF  H GYPT  H + +   G    +R +F+P
Sbjct: 123 AEISAASIIAKVERDNDMLALDELHPEYGFAGHKGYPTKAHFEALATHGVIDGYRKSFKP 182

Query: 204 LRNL 207
           ++ L
Sbjct: 183 VKAL 186


>gi|254374688|ref|ZP_04990169.1| ribonuclease H [Francisella novicida GA99-3548]
 gi|151572407|gb|EDN38061.1| ribonuclease H [Francisella novicida GA99-3548]
          Length = 187

 Score =  247 bits (631), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 80/185 (43%), Positives = 116/185 (62%), Gaps = 2/185 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             + GIDE GRG L+GPVV A +ILD + I  G+ DSKK++ KKR+ LY++I + A   +
Sbjct: 1   MIILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYT 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I   S Q ID+ NI +ATL A++    NL+      L+DG  +P +    + A++KGDS 
Sbjct: 61  IVEISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWNYNSEAIVKGDSK 119

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            + I+AASI+AKV RD +     + YP YGF  H GYPT +H + IK+ G   IHR +++
Sbjct: 120 IIEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYK 179

Query: 203 PLRNL 207
           P++ L
Sbjct: 180 PVQML 184


>gi|189043611|sp|A7H722|RNH2_ANADF RecName: Full=Ribonuclease HII; Short=RNase HII
          Length = 315

 Score =  247 bits (631), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 84/196 (42%), Positives = 120/196 (61%), Gaps = 2/196 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +  +  VAG+DE G   LAGPVV  A IL  +  P GI+DSK++  ++RE L
Sbjct: 66  LRYEGELWDGGVTLVAGVDEAGMAPLAGPVVAGACILPRDYRPRGIDDSKQLDRRERERL 125

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            E I ++A+  +++ A  + ID+ NI++A L A+  AV+ L   P   L+D R +PE L 
Sbjct: 126 AEDIKANAVCWAVARAEVEEIDRLNIYRAGLLALTRAVQALTPAPGHVLVDARKLPE-LR 184

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +I GD++SL+IAAASI+AK TRD LM      YP YGF +H GYPTA+H Q ++ 
Sbjct: 185 LPQTPIIHGDALSLTIAAASILAKTTRDELMGELDALYPGYGFCNHKGYPTAEHFQALER 244

Query: 191 KGPSCIHRLTFRPLRN 206
            G   IHR +F+P+R 
Sbjct: 245 LGACPIHRRSFQPVRE 260


>gi|227872391|ref|ZP_03990738.1| ribonuclease H [Oribacterium sinus F0268]
 gi|227841751|gb|EEJ52034.1| ribonuclease H [Oribacterium sinus F0268]
          Length = 217

 Score =  247 bits (631), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 87/204 (42%), Positives = 124/204 (60%), Gaps = 10/204 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  ++LE      N+  +AG+DE GRG LAGPVV A  IL  +++ + +NDSKK++ K+R
Sbjct: 14  KEMWKLEEE--HANLTFIAGVDEAGRGPLAGPVVAATAILPKDHLFYYLNDSKKMTEKRR 71

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVE----NLQVIPRSALIDGR 123
           E L+ +I  +AI   I   S + ID+ NI +AT +A+  A+E    N  +IP   L D  
Sbjct: 72  EALFLEIKENAIAYGIGIVSPERIDEINILQATYEAMRLAIEEMEKNFSIIPSLLLNDAV 131

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            IP  +      ++ GD+ SLSIAAAS++AKV+RD LM    K+YP+YGF+ H GY T  
Sbjct: 132 RIPM-VDIPQIPIVHGDAKSLSIAAASVLAKVSRDHLMLDYAKEYPEYGFEKHKGYGTKA 190

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H + I E GP  IHR +F  L+ L
Sbjct: 191 HTEAILEYGPCPIHRRSF--LKKL 212


>gi|315498150|ref|YP_004086954.1| ribonuclease h [Asticcacaulis excentricus CB 48]
 gi|315416162|gb|ADU12803.1| Ribonuclease H [Asticcacaulis excentricus CB 48]
          Length = 207

 Score =  247 bits (631), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 95/200 (47%), Positives = 118/200 (59%), Gaps = 6/200 (3%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
            P F  E+         V G+DE GRG  AGP+ VAA+ILDP  IP GI DSKK+S K+R
Sbjct: 1   MPDFTFESQFD----GLVCGVDEAGRGPCAGPLCVAAVILDPARIPPGIADSKKLSEKQR 56

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
             L   I ++A+  S+   S   ID HNI +AT+  + HAVE L   P  ALIDG   P 
Sbjct: 57  FALEPDIKAAALAWSVIEISAADIDCHNILRATMMGMTHAVEALSPQPIHALIDGNRCPP 116

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            L   A AV+KGD  SLSIAAASI+AK  RDR+M      YP YGF SH GY    H   
Sbjct: 117 -LAIPATAVVKGDDKSLSIAAASILAKTARDRIMIEMDALYPIYGFKSHKGYQAEAHIAA 175

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           I+  GPS IHR+++  +R++
Sbjct: 176 IRLHGPSPIHRMSWATVRSV 195


>gi|293370450|ref|ZP_06617003.1| ribonuclease HII [Bacteroides ovatus SD CMC 3f]
 gi|292634442|gb|EFF52978.1| ribonuclease HII [Bacteroides ovatus SD CMC 3f]
          Length = 200

 Score =  247 bits (631), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 77/179 (43%), Positives = 104/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK++S K+R  L E I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLSEKQRYALREVIEKEAIAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + ID+ NI +A+  A++ AV+ L   P+  LIDG    +        V+KGD   LS
Sbjct: 73  VSPEEIDEINILRASFLAMHRAVDQLTTRPQHLLIDGNRFTKYPDIPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H ++P Y +D + GYPT KH+  I E+G +  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNRLHDEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTFNLL 191


>gi|325661112|ref|ZP_08149739.1| hypothetical protein HMPREF0490_00472 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472619|gb|EGC75830.1| hypothetical protein HMPREF0490_00472 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 254

 Score =  247 bits (631), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 87/183 (47%), Positives = 116/183 (63%), Gaps = 2/183 (1%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           ++   + GIDEVGRG LAGPVV  A+IL  ++    +NDSKK++ K+REELYE I   AI
Sbjct: 67  RDAAFICGIDEVGRGPLAGPVVAGAVILPKDSQILYLNDSKKLTEKRREELYEVIMREAI 126

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ-AFAVIK 138
            + I   S   ID+ NI +AT +A+  AV  L V P   L D  +IP   P      +IK
Sbjct: 127 AVGIGIVSPARIDEINILQATYEAMREAVGKLCVEPNVLLNDAVTIPMIPPHIVQVPIIK 186

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD+ S+SIAAASI+AKVTRDRLM    +  P YGF S+ GY +++H   +K+ GP+ IHR
Sbjct: 187 GDAKSVSIAAASIVAKVTRDRLMTEYEEVLPGYGFASNKGYGSSEHIAALKKYGPTPIHR 246

Query: 199 LTF 201
            +F
Sbjct: 247 RSF 249


>gi|222054591|ref|YP_002536953.1| Ribonuclease H [Geobacter sp. FRC-32]
 gi|254807978|sp|B9M597|RNH2_GEOSF RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|221563880|gb|ACM19852.1| Ribonuclease H [Geobacter sp. FRC-32]
          Length = 216

 Score =  247 bits (631), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 86/201 (42%), Positives = 121/201 (60%), Gaps = 3/201 (1%)

Query: 8   ERPHF-ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           E+P   E ++MVR +    +AG+DE GRG LAGPVV AA+IL        ++DSKK++  
Sbjct: 10  EKPTLLEFDSMVRCQGYASLAGVDEAGRGPLAGPVVAAAVILPAGIGLSEVDDSKKLTSG 69

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           KR+EL+E I ++A+ + +  +    ID+ NI +ATL A+  A+  L + P   L+DG S 
Sbjct: 70  KRDELFEVIMANALAVGVGLSDAGVIDRINILQATLAAMKEALSLLFIKPDYVLVDGISK 129

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
              +      + KGD  SLSIAAASI+AKV RDRLM     ++P YGF +H GY    H 
Sbjct: 130 IP-VTIPQKTIKKGDGTSLSIAAASIVAKVHRDRLMVSYDAEFPQYGFAAHKGYGCVDHL 188

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
           + I E GP  IHR+TF  ++ 
Sbjct: 189 KAIAEYGPCPIHRMTFSGVKE 209


>gi|86609281|ref|YP_478043.1| ribonuclease HII [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|97189393|sp|Q2JKK9|RNH2_SYNJB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|86557823|gb|ABD02780.1| ribonuclease HII [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 213

 Score =  247 bits (631), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 87/205 (42%), Positives = 127/205 (61%), Gaps = 6/205 (2%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP---FGINDSKKISH 65
           RP    E  + ++ +  VAG+DEVGRGALAGPVV AA+IL     P    G+ DSK++  
Sbjct: 6   RPSLIWEGSLWQQGILRVAGVDEVGRGALAGPVVAAAVILPAQMDPKELEGVRDSKQLRP 65

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           ++R +  E+I   A+ + + SAS   ID+ NI +AT+ A+  A+  L  I    L+DG  
Sbjct: 66  QQRAQWAERIRQVALAVGVGSASAAEIDRLNIRQATVLAMQRALAKLDPI-EHILLDGLP 124

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           + E L  +  A++KGD ISLSIAAAS++AKV RD LM+   ++YP YG+ ++ GY T +H
Sbjct: 125 LAE-LGSRQTALVKGDHISLSIAAASVVAKVWRDALMQSWDRQYPGYGWRTNAGYGTREH 183

Query: 185 QQVIKEKGPSCIHRLTFRPLRNLSV 209
           +  ++  GP+  HR +F PL  L V
Sbjct: 184 RLALQNLGPTPQHRRSFAPLAELKV 208


>gi|303235632|ref|ZP_07322239.1| ribonuclease HII [Prevotella disiens FB035-09AN]
 gi|302484079|gb|EFL47067.1| ribonuclease HII [Prevotella disiens FB035-09AN]
          Length = 202

 Score =  247 bits (631), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 72/179 (40%), Positives = 106/179 (59%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL PN     +NDSK++S KKR +L   I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPPNYENELLNDSKQLSEKKRYQLRSIIEKDAIAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + ID+ NI  A++ A++ A++ L+  P + ++DG             ++KGD   LS
Sbjct: 73  VTAEEIDEINILNASILAMHRALDGLKTRPEAVIVDGNRFKPYKDLPYSTIVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M+   ++YP Y + S+ GYPT KH++ I++ G +  HR +F  L
Sbjct: 133 IAAASILAKTYRDDYMKGLAEEYPQYDWKSNKGYPTKKHREAIRQHGITPYHRKSFTLL 191


>gi|315658466|ref|ZP_07911338.1| ribonuclease HII [Staphylococcus lugdunensis M23590]
 gi|315496795|gb|EFU85118.1| ribonuclease HII [Staphylococcus lugdunensis M23590]
          Length = 255

 Score =  246 bits (630), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 87/197 (44%), Positives = 123/197 (62%), Gaps = 4/197 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +E E +++++    + GIDEVGRG LAGPVV  A+IL+ N+   G+NDSKK+S   R +L
Sbjct: 61  YEQE-ILQQQPDAIICGIDEVGRGPLAGPVVACAVILNANHHYLGLNDSKKVSAVNRAQL 119

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            + +  +    +   AS   ID+ NI++AT  A+  A+  LQV P   LID  SI  D  
Sbjct: 120 NQDLMDNVRGYAYGIASAAEIDQLNIYRATQVAMQRAINQLQVRPTHLLIDAMSI--DST 177

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               A+IKGD+ S+SIAAASI+AK  RD LMR   + YP YGFD +VGY T  H   +++
Sbjct: 178 ISQTAIIKGDAKSVSIAAASIMAKEYRDHLMRDYAQVYPHYGFDKNVGYGTKAHLAGLEQ 237

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR TF P++++
Sbjct: 238 YGVTPIHRRTFEPVKSM 254


>gi|239815594|ref|YP_002944504.1| ribonuclease HII [Variovorax paradoxus S110]
 gi|239802171|gb|ACS19238.1| Ribonuclease H [Variovorax paradoxus S110]
          Length = 240

 Score =  246 bits (630), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 80/182 (43%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82
             VAG+DE GRG LAGPVV AA+ILD      G+ DSK ++  +RE L ++I + A+  S
Sbjct: 20  GLVAGVDEAGRGPLAGPVVAAAVILDDQRPIRGLADSKTLTALQRERLNDQILAKALCCS 79

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           ++ A+ + ID HNI +AT+ A+  AVE L++ P   L+DG  +P  L   A A++KGD+ 
Sbjct: 80  VAQATVEEIDTHNILQATMLAMRRAVEGLRLKPAKVLVDGNRLPT-LDVLAEAIVKGDAR 138

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +I+AASI+AKV RDRL    H ++P YGF  H GY T +H + ++  G    HR +F 
Sbjct: 139 IKAISAASILAKVHRDRLCEQLHLEFPHYGFAGHKGYGTPEHLEALQRHGACIHHRRSFS 198

Query: 203 PL 204
           P+
Sbjct: 199 PV 200


>gi|208779943|ref|ZP_03247287.1| ribonuclease HII [Francisella novicida FTG]
 gi|208744398|gb|EDZ90698.1| ribonuclease HII [Francisella novicida FTG]
          Length = 187

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 80/185 (43%), Positives = 116/185 (62%), Gaps = 2/185 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             + GIDE GRG L+GPVV A +ILD + I  G+ DSKK++ KKR+ LY++I + A   +
Sbjct: 1   MIILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYT 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I   S Q ID+ NI +ATL A++    NL+      L+DG  +P +    + A++KGDS 
Sbjct: 61  IVEISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSK 119

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            + I+AASI+AKV RD +     + YP YGF  H GYPT +H + IK+ G   IHR +++
Sbjct: 120 IIEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYK 179

Query: 203 PLRNL 207
           P++ L
Sbjct: 180 PVQML 184


>gi|154491927|ref|ZP_02031553.1| hypothetical protein PARMER_01557 [Parabacteroides merdae ATCC
           43184]
 gi|154088168|gb|EDN87213.1| hypothetical protein PARMER_01557 [Parabacteroides merdae ATCC
           43184]
          Length = 199

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/179 (42%), Positives = 103/179 (57%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL P+     +NDSK++S KKR  L   I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPPDFHNEDLNDSKQLSEKKRYALRPIIEREAIAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + ID+ NI KA+  A++ A++ L+V P   LIDG         +   V+KGD   LS
Sbjct: 73  VTPEEIDRINILKASFLAMHRAIDQLKVKPEHLLIDGNRFTPYPGLKHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M    ++YP Y +  + GYPT  H++ I+E G +  HR TF  L
Sbjct: 133 IAAASILAKTYRDDYMDSLDREYPAYHWKENKGYPTKAHREAIRECGITPYHRKTFTLL 191


>gi|222151079|ref|YP_002560233.1| ribonuclease HII [Macrococcus caseolyticus JCSC5402]
 gi|254807980|sp|B9EBC6|RNH2_MACCJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|222120202|dbj|BAH17537.1| ribonuclease HII [Macrococcus caseolyticus JCSC5402]
          Length = 264

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 85/198 (42%), Positives = 126/198 (63%), Gaps = 5/198 (2%)

Query: 13  ELEAMV---REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           E E M+   R  N   V GIDEVGRG LAGPV+  A+IL+  +   G+NDSK++S  KR 
Sbjct: 55  EYEQMLEYERRYNGKVVCGIDEVGRGPLAGPVIACAVILNDGHHYIGLNDSKQLSKHKRA 114

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            LY+ +T S   +I +AS + IDK NI++AT  A++ A++ L V P   LID  ++   L
Sbjct: 115 SLYDALTQSVTYAIGAASVEEIDKFNIYEATKLAMHRAIDKLPVKPDVLLIDAMNLNTGL 174

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             ++  +IKGD+ S+SIAAAS+IAKV RD LM   H+++P Y F+ + GY T +H   + 
Sbjct: 175 IEES--IIKGDAKSVSIAAASVIAKVYRDHLMEEIHEEFPYYDFNRNAGYGTKRHLDGLM 232

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + G +  HR +F P++++
Sbjct: 233 QYGITAHHRKSFEPIKSM 250


>gi|218131835|ref|ZP_03460639.1| hypothetical protein BACEGG_03456 [Bacteroides eggerthii DSM 20697]
 gi|317474549|ref|ZP_07933823.1| ribonuclease HII [Bacteroides eggerthii 1_2_48FAA]
 gi|217986138|gb|EEC52477.1| hypothetical protein BACEGG_03456 [Bacteroides eggerthii DSM 20697]
 gi|316909230|gb|EFV30910.1| ribonuclease HII [Bacteroides eggerthii 1_2_48FAA]
          Length = 199

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/179 (43%), Positives = 106/179 (59%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++ K+R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + IDK NI  A+  A++ AV+ LQ+ P+  LIDG    +        V+KGD   LS
Sbjct: 73  VSPEEIDKINILNASFLAMHRAVDRLQLRPQHLLIDGNRFKKYRELPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H++YP Y ++ + GYPT KH+  I E+G S  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPYYDWNHNKGYPTKKHRAAIAERGTSPYHRMTFNLL 191


>gi|70726670|ref|YP_253584.1| ribonuclease HII [Staphylococcus haemolyticus JCSC1435]
 gi|97189319|sp|Q4L5U7|RNH2_STAHJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|68447394|dbj|BAE04978.1| ribonuclease HII [Staphylococcus haemolyticus JCSC1435]
          Length = 255

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/197 (39%), Positives = 116/197 (58%), Gaps = 4/197 (2%)

Query: 14  LEAMVREKN-MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
            E+ +   N    + GIDEVGRG LAGPVV  A+IL+  +   G++DSKK++  KR+ L 
Sbjct: 61  FESELLNNNPQALICGIDEVGRGPLAGPVVACAVILNEGHRYLGLDDSKKVTASKRQILN 120

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           +K+    +  +   AS + ID+ NI+ AT  A+  A+  L   P   LID  S+  D   
Sbjct: 121 KKLKDGVLEYAYGLASPEEIDELNIYNATQVAMNRALSQLVNRPDHLLIDAMSL--DTTI 178

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASI+AK  RD LM+    +YP Y F+ +VGY T  H   + + 
Sbjct: 179 PQTSIIKGDAKSVSIAAASIMAKEYRDDLMKEIADEYPGYEFEKNVGYGTKAHLDGLNKL 238

Query: 192 GPSCIHRLTFRPLRNLS 208
           G +  HR +F P+++++
Sbjct: 239 GITPYHRKSFEPIKSMT 255


>gi|229019032|ref|ZP_04175873.1| Ribonuclease [Bacillus cereus AH1273]
 gi|229025278|ref|ZP_04181698.1| Ribonuclease [Bacillus cereus AH1272]
 gi|228736031|gb|EEL86606.1| Ribonuclease [Bacillus cereus AH1272]
 gi|228742272|gb|EEL92431.1| Ribonuclease [Bacillus cereus AH1273]
          Length = 255

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 94/195 (48%), Positives = 127/195 (65%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA++L       G+NDSKK+S  KRE  Y+
Sbjct: 62  YEHALREKGIMYIAGIDEVGRGPLAGPVVTAAVVLPEEFYIPGLNDSKKLSEAKRERFYD 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   AI I +   S Q ID+ NI++AT  A+  AV NL   P   LID   +P  +P  
Sbjct: 122 EIKEHAIAIGVGIVSPQIIDEINIYQATKQAMLDAVANLSCTPEYLLIDAMKLPTSIP-- 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   KKYP YGF+ H+GY T +H + I+  G
Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGKKYPAYGFEQHMGYGTKQHLEAIESHG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 240 VLEEHRKSFAPIKDM 254


>gi|329964524|ref|ZP_08301578.1| ribonuclease HII [Bacteroides fluxus YIT 12057]
 gi|328524924|gb|EGF51976.1| ribonuclease HII [Bacteroides fluxus YIT 12057]
          Length = 205

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/179 (41%), Positives = 104/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++ K+R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S   ID+ NI  A+  A++ AV+ L + P+  L+DG    +        V+KGD   LS
Sbjct: 73  VSPGEIDQINILNASFLAMHRAVDQLNIRPQHLLVDGNRFKKYRDVPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H++YP Y ++ + GYPT KH+  I E+G +  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNGLHEEYPYYDWNHNKGYPTKKHRAAIAERGTTPYHRMTFNLL 191


>gi|314933425|ref|ZP_07840790.1| ribonuclease HII [Staphylococcus caprae C87]
 gi|313653575|gb|EFS17332.1| ribonuclease HII [Staphylococcus caprae C87]
          Length = 256

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 81/198 (40%), Positives = 123/198 (62%), Gaps = 4/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           H+E E ++   N   + G+DEVGRG LAGPVV  A+IL+ ++   G+NDSKK+  K+R  
Sbjct: 60  HYENE-ILNHNNEALICGVDEVGRGPLAGPVVACAVILNRDHHYLGLNDSKKVPAKQRSI 118

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L EK+  + +  +   A+ Q ID  NI++AT  A+  A++ L + P   LID   +  ++
Sbjct: 119 LNEKLKDNVMSYAYGIATPQEIDDLNIYRATQVAMQRAIDQLSIKPTHLLIDAMKLDNNI 178

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P    ++IKGD+ S+SIAAASI+AK  RD  M+    +YP+YGF+ +VGY T +H + I 
Sbjct: 179 P--QTSIIKGDAKSVSIAAASIMAKEYRDDYMKELANEYPNYGFEKNVGYGTKQHLEAID 236

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G    HR TF P++++
Sbjct: 237 TFGVIKEHRQTFEPIKSM 254


>gi|329893784|ref|ZP_08269872.1| Ribonuclease HII [gamma proteobacterium IMCC3088]
 gi|328923507|gb|EGG30821.1| Ribonuclease HII [gamma proteobacterium IMCC3088]
          Length = 193

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 81/191 (42%), Positives = 110/191 (57%), Gaps = 1/191 (0%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76
           M+    +  VAG+DEVGRG L G VV AA+ILD NN   G+ DSKK + K+   L E I 
Sbjct: 1   MLLAYEIGLVAGVDEVGRGPLVGNVVTAAVILDVNNPVEGLKDSKKCTEKQLHALNEDIQ 60

Query: 77  SSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135
           + A+  +   A+   ID+ NI  AT+ A+  AV  L + P   L+DG  +P  L   A  
Sbjct: 61  AKALCFAFGQATPAEIDELNILHATMLAMTRAVNGLSITPEHVLVDGNRVPRQLGVPATP 120

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
            IKGD     IAAASI+AKV RD  M    +++P+YGF  H GYPT +H+Q + + G   
Sbjct: 121 CIKGDGTYACIAAASILAKVARDAQMVDLDRRHPEYGFARHKGYPTLEHRQALIDHGVLI 180

Query: 196 IHRLTFRPLRN 206
            HR +F P++ 
Sbjct: 181 EHRKSFGPVQR 191


>gi|332828692|gb|EGK01384.1| ribonuclease HII [Dysgonomonas gadei ATCC BAA-286]
          Length = 199

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/176 (42%), Positives = 101/176 (57%), Gaps = 1/176 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL  +     +NDSK+++ K+R  L   I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGPVFAAAVILPKDFECEKLNDSKQLTEKERYNLRPLIEERALAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
             H+ IDK NI  A+  A+  AV +L++ P+  LIDG    +        V+KGD   L 
Sbjct: 73  VDHKEIDKINILNASFLAMQRAVASLKIRPQHLLIDGNRFKKYEDIPHTCVVKGDGKLLP 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           IAAAS++AK  RD  M   H +YP Y +D + GYPT KH+  IK  G +  HRLTF
Sbjct: 133 IAAASVLAKTYRDDYMEKLHGEYPLYDWDHNKGYPTKKHRLAIKAYGVTPYHRLTF 188


>gi|149196242|ref|ZP_01873297.1| ribonuclease HII [Lentisphaera araneosa HTCC2155]
 gi|149140503|gb|EDM28901.1| ribonuclease HII [Lentisphaera araneosa HTCC2155]
          Length = 209

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 84/204 (41%), Positives = 121/204 (59%), Gaps = 4/204 (1%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKIS 64
           +PE   F  E   R      + G+DEVGRG LAGPVV A  I+     +P G++DSKK+S
Sbjct: 1   MPEPDMFFFEEHYRLLGFQAIGGVDEVGRGPLAGPVVAACCIIREGVVLPEGVDDSKKLS 60

Query: 65  HKKREELYEKITSS--AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
            KKR  +Y+++        ++     + ID+ NI +A+  A+  AV+ ++V P   LIDG
Sbjct: 61  RKKRRLIYDQLLEVEGVNYALGIVEAEEIDEINILQASHLAMRKAVKAMKVKPDYLLIDG 120

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
             +P      + +++KGDS S+SIAAASI+AK  RD LM    KKYP+YGF+ H+GY T 
Sbjct: 121 LPVP-GFEQDSRSIVKGDSRSVSIAAASILAKEFRDDLMIEYSKKYPEYGFEKHMGYGTK 179

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRN 206
            H + +K  GP  +HR +F P+R 
Sbjct: 180 LHMEALKNCGPCPLHRRSFAPVRK 203


>gi|228986980|ref|ZP_04147106.1| Ribonuclease [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228772758|gb|EEM21198.1| Ribonuclease [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 257

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 92/195 (47%), Positives = 128/195 (65%), Gaps = 3/195 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA++L  +    G+NDSKK+S  KR+  Y+
Sbjct: 62  YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRDRFYD 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   AI I +   S Q ID+ NI++AT  A+  AV NL   P+  LID   +P   P  
Sbjct: 122 EIKVQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPT--PIP 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H + I+  G
Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEVHG 239

Query: 193 PSCIHRLTFRPLRNL 207
               HR +F P++++
Sbjct: 240 ILEEHRKSFAPIKDM 254


>gi|160872277|ref|ZP_02062409.1| ribonuclease HII [Rickettsiella grylli]
 gi|159121076|gb|EDP46414.1| ribonuclease HII [Rickettsiella grylli]
          Length = 191

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 84/187 (44%), Positives = 112/187 (59%), Gaps = 2/187 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DE GRG LAGPV  AA+ILD      G+ DSK+++ K RE   +KI   A   +
Sbjct: 4   QSVAGVDEAGRGPLAGPVFAAAVILDNKKKMTGLKDSKQLTAKSREYFAKKIQEKAKTWA 63

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I  A  + IDK NI  A L A+  AV  L +IP   L+DG+  P+ L   + A+IKGD  
Sbjct: 64  IGRAEVEEIDKLNIFHACLLAMKRAVCALALIPDFVLVDGKHCPQ-LSVPSKAIIKGDEK 122

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +I+AASI+AKV RD  M +   +YP YGF  H GY T +H   +K+ GPS IHR +F 
Sbjct: 123 ITAISAASILAKVHRDANMVLLDAEYPGYGFAQHKGYTTKQHLLALKKLGPSPIHRRSFA 182

Query: 203 PLRNLSV 209
           P+R+  +
Sbjct: 183 PIRHYEL 189


>gi|86156706|ref|YP_463491.1| ribonuclease HII [Anaeromyxobacter dehalogenans 2CP-C]
 gi|97182177|sp|Q2IMM4|RNH2_ANADE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|85773217|gb|ABC80054.1| ribonuclease H [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 283

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 80/195 (41%), Positives = 115/195 (58%), Gaps = 2/195 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              EA + E+ +  VAG+DE G   LAGPVV  A +L  +  P GI+DSK++   +RE L
Sbjct: 66  LRYEAELWERGLVHVAGVDEAGMAPLAGPVVAGACVLPRDYRPRGIDDSKQLDRAERERL 125

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            E I  +A+  +++ A  + ID+ N++ A + A+  AV+ L   P   L+D R +P DLP
Sbjct: 126 AEDIKRNAVCWAVARAEVEEIDRLNVYWAGMLALRRAVDGLSARPEHLLVDARKLP-DLP 184

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                ++ GD++SL+IAAASI+AK  RD LM      +P YGF  H GYPTA+H   +  
Sbjct: 185 FPQTPIVHGDALSLTIAAASILAKTARDALMAELDLAHPGYGFARHKGYPTAEHFDALGR 244

Query: 191 KGPSCIHRLTFRPLR 205
            G   IHR +F P+R
Sbjct: 245 LGACPIHRRSFAPVR 259


>gi|332665027|ref|YP_004447815.1| ribonuclease H [Haliscomenobacter hydrossis DSM 1100]
 gi|332333841|gb|AEE50942.1| Ribonuclease H [Haliscomenobacter hydrossis DSM 1100]
          Length = 199

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 71/185 (38%), Positives = 105/185 (56%), Gaps = 2/185 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL  +     +NDSK+++ ++R EL   I +SA   +++ 
Sbjct: 13  AGCDEAGRGCLAGPVFAAAVILPKDFRHPLLNDSKQLTEQQRLELRCIIKASATCWAVAQ 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
                ID+ NI  A+  A++ A++ L+  P   L+DG             +IKGD I +S
Sbjct: 73  VDPAEIDQVNILNASFLAMHRALDKLETPPELILVDGNRFTPYRNIAHRCIIKGDGIYMS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL- 204
           IAAASI+AK  RD  M    + +P YG+  + GYPT  H++ ++  G +  HR +FR L 
Sbjct: 133 IAAASILAKTYRDDYMADLAESHPQYGWSKNKGYPTKAHREALRHHGVTSHHRRSFRLLP 192

Query: 205 RNLSV 209
             LS+
Sbjct: 193 EQLSL 197


>gi|257089969|ref|ZP_05584330.1| ribonuclease HII [Enterococcus faecalis CH188]
 gi|256998781|gb|EEU85301.1| ribonuclease HII [Enterococcus faecalis CH188]
          Length = 255

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 90/196 (45%), Positives = 126/196 (64%), Gaps = 3/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E    +K    +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S KK+E LY
Sbjct: 61  QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKQETLY 120

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I   A+ I +  A    ID+ NI++AT  A+  A+++L   P   LID   +  D+P 
Sbjct: 121 NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLIDAMQL--DVPQ 178

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASIIAKVTRDRLM    + YP YGF ++ GY T +H   +++ 
Sbjct: 179 PQESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKY 238

Query: 192 GPSCIHRLTFRPLRNL 207
           G + IHR TF P++++
Sbjct: 239 GVTPIHRRTFAPIKDM 254


>gi|313667504|ref|YP_004047788.1| ribonuclease HII [Neisseria lactamica ST-640]
 gi|313004966|emb|CBN86394.1| ribonuclease HII [Neisseria lactamica 020-06]
          Length = 212

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 82/205 (40%), Positives = 113/205 (55%), Gaps = 3/205 (1%)

Query: 6   IPERPHFELEAMVREKNMWPV--AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           +P    F     +   N+  +  AG+DE GRG L G V  AA+IL       G+ DSKK+
Sbjct: 1   MPSETPFRRHRTIPTGNIMHILTAGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKL 60

Query: 64  SHKKREELYEKITSSAIISISSAS-HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           S KKR+ L + I + A     +A+  + I   NI  AT+ A+  A++ L V P    IDG
Sbjct: 61  SEKKRDALAKIIKNQAAAWHVAAAGPEEIASLNILHATMLAMKRAIDGLAVRPEKIFIDG 120

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
             IPE L   A AV+KGDS  + I+AAS++AK  RD  M    +++P YGFD H GY T 
Sbjct: 121 NRIPEHLNIPAEAVVKGDSKIIEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTK 180

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207
           +H + +K+ G    HR  F P+RNL
Sbjct: 181 QHLEALKQYGVLPEHRRDFAPVRNL 205


>gi|320107359|ref|YP_004182949.1| Ribonuclease H [Terriglobus saanensis SP1PR4]
 gi|319925880|gb|ADV82955.1| Ribonuclease H [Terriglobus saanensis SP1PR4]
          Length = 248

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 88/208 (42%), Positives = 129/208 (62%), Gaps = 13/208 (6%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF---GI 57
           + C+  P       E  +R      +AG+DEVGRGAL GPVV AA+IL          G+
Sbjct: 21  LVCSDAP-------EQALRHLGYLVIAGVDEVGRGALCGPVVAAAVILPEEMGWLATKGL 73

Query: 58  NDSKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116
            DSK+++ ++REEL  +I S A+  SI++   + ID+ NI++A+  A+  AV+ L V P 
Sbjct: 74  RDSKQLTREQREELDAEIRSVALAASIAAVDAETIDRVNIYQASRMAMQMAVDALTVRPD 133

Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
             LID   I +  PC    +I GDS+SLSIAAAS++AKV RD +MR   +++P YG +SH
Sbjct: 134 HLLIDAMRISD--PCAQTRLIYGDSLSLSIAAASVVAKVYRDAMMRKFAEEHPQYGMESH 191

Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            GY T +H++ +KE GP+ +HR +F P+
Sbjct: 192 KGYGTPEHRRALKEHGPTPLHRRSFAPV 219


>gi|110834018|ref|YP_692877.1| ribonuclease H [Alcanivorax borkumensis SK2]
 gi|123149533|sp|Q0VQE3|RNH2_ALCBS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|110647129|emb|CAL16605.1| ribonuclease H [Alcanivorax borkumensis SK2]
          Length = 220

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 90/188 (47%), Positives = 113/188 (60%), Gaps = 3/188 (1%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77
             +  M  VAG+DEVGRG L G VV AA+ILDP     G+ DSKKIS KKR  L  +I S
Sbjct: 25  FWQPGM-LVAGVDEVGRGPLVGAVVTAAVILDPKYPIVGLADSKKISEKKRLALESEIKS 83

Query: 78  SAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136
            A+  ++  A    ID+ NI  AT+ A+  AV  L V   + LIDG  +P  L C A AV
Sbjct: 84  HALGWALGRAESDEIDQLNILHATMLAMQRAVAALPVEAHAVLIDGNRVPA-LQCPAQAV 142

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           +KGD    +I+AASI+AKV RDR M   H +YP YGFD H GYPTA H   +++ G    
Sbjct: 143 VKGDGRVPAISAASILAKVARDREMYALHARYPQYGFDRHKGYPTAVHMAALEQHGALAE 202

Query: 197 HRLTFRPL 204
           HR +F P+
Sbjct: 203 HRRSFGPV 210


>gi|167764134|ref|ZP_02436261.1| hypothetical protein BACSTE_02517 [Bacteroides stercoris ATCC
           43183]
 gi|167698250|gb|EDS14829.1| hypothetical protein BACSTE_02517 [Bacteroides stercoris ATCC
           43183]
          Length = 201

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/179 (42%), Positives = 105/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++ K+R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEALAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S   IDK NI  A+  A++ AV+ LQ+ P+  LIDG    +        V+KGD   LS
Sbjct: 73  VSPGEIDKINILNASFLAMHRAVDRLQLRPQHLLIDGNRFKKYRDIPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H+++P Y ++ + GYPT KH+  I E+G +  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWNHNKGYPTKKHRAAIAERGTTPYHRMTFNLL 191


>gi|302344581|ref|YP_003809110.1| ribonuclease H [Desulfarculus baarsii DSM 2075]
 gi|301641194|gb|ADK86516.1| Ribonuclease H [Desulfarculus baarsii DSM 2075]
          Length = 217

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/196 (39%), Positives = 117/196 (59%), Gaps = 2/196 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E ++  +    +AG DE GRG LAGPVV AA++L  +    G++DSK++S  +RE L E+
Sbjct: 18  EMLLWRRGCRLLAGADEAGRGPLAGPVVAAAVMLRADWPDPGVDDSKRLSAARREFLAER 77

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I + A   +++      ID+ NIH A+L A+  AVE L+  P   L+DGR +   L    
Sbjct: 78  IKADAAGWAVAVVEADEIDRLNIHNASLLAMSRAVEQLRPRPDFLLVDGRFVTP-LDLPQ 136

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            AV+ GD+    IAAASI+AKV RD LM   H+++P Y F ++ GYPT +H++ +   GP
Sbjct: 137 KAVVGGDASCRCIAAASILAKVWRDGLMARLHERWPQYNFAANKGYPTPQHKEALARFGP 196

Query: 194 SCIHRLTFRPLRNLSV 209
             IHR ++  +  + +
Sbjct: 197 CPIHRRSYADVAQMPL 212


>gi|299147105|ref|ZP_07040172.1| ribonuclease HII [Bacteroides sp. 3_1_23]
 gi|298514990|gb|EFI38872.1| ribonuclease HII [Bacteroides sp. 3_1_23]
          Length = 200

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/179 (42%), Positives = 105/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++ K+R  L E I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEAIAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + ID+ NI +A+  A++ AV+ L   P+  LIDG    +        V+KGD   LS
Sbjct: 73  VSPEEIDEINILRASFLAMHRAVDQLSTRPQHLLIDGNRFTKYPGVPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H+++P Y +D + GYPT KH+  I E+G +  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRASIAERGTTPYHRMTFNLL 191


>gi|260910879|ref|ZP_05917522.1| ribonuclease HII [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634987|gb|EEX53034.1| ribonuclease HII [Prevotella sp. oral taxon 472 str. F0295]
          Length = 202

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/184 (37%), Positives = 107/184 (58%), Gaps = 1/184 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSKK++ K+R  L  +I + A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSVFAAAVILPTDYENALLNDSKKLTEKQRYALRTQIEADALAWAVGE 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            +   ID+ NI  A++ A++ A++ L++ P++ ++DG             ++KGD+  LS
Sbjct: 73  VTADEIDEINILNASILAMHRALDGLKLRPQAVIVDGNRFKPYGTLPHETIVKGDAKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           IAAASI+AK  RD  M     +YP Y +  + GYPT  H+  I+E G S  HR TF+ ++
Sbjct: 133 IAAASILAKTYRDDYMDNLALQYPAYQWKVNKGYPTKAHRAAIEEHGISPFHRKTFKGVK 192

Query: 206 NLSV 209
            + V
Sbjct: 193 EMLV 196


>gi|227890783|ref|ZP_04008588.1| ribonuclease HII [Lactobacillus salivarius ATCC 11741]
 gi|227867192|gb|EEJ74613.1| ribonuclease HII [Lactobacillus salivarius ATCC 11741]
          Length = 255

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/208 (41%), Positives = 134/208 (64%), Gaps = 3/208 (1%)

Query: 3   CNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62
              +  +   ++E  +  K +  +AG+DEVGRG LAGPVV AA+IL  +   F +NDSK+
Sbjct: 49  NEKLKFQNRLKIERDLWNKGIEYIAGVDEVGRGPLAGPVVTAAVILPHDFDIFEVNDSKQ 108

Query: 63  ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           +S KKREELY+KI   A+ +S+  + +  ID+ NI++AT  A+  A+E+L + P+  ++D
Sbjct: 109 LSEKKREELYKKILEKAVAVSVGLSDNNLIDEVNIYEATRLAMKQAIESLNITPQKIIVD 168

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
             +I  D       +IKGD+ S S+AAASI+AKVTRD LM+   + YP YGF+ + GY T
Sbjct: 169 AMTI--DTKIPQLRLIKGDAKSASVAAASIVAKVTRDHLMQFYARIYPGYGFEKNDGYGT 226

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNLSV 209
            +H + ++ KG + IHR +F P++ + +
Sbjct: 227 KQHLEGLENKGVTPIHRQSFEPVKKILL 254


>gi|325141206|gb|EGC63706.1| ribonuclease HII [Neisseria meningitidis CU385]
          Length = 194

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 82/182 (45%), Positives = 105/182 (57%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86
           AG+DE GRG L G V  AA+IL       G+ DSKK+S KKR+ L E I   A     +A
Sbjct: 6   AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKDQAAAWHVAA 65

Query: 87  -SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  + 
Sbjct: 66  ASPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P+R
Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185

Query: 206 NL 207
           NL
Sbjct: 186 NL 187


>gi|301300759|ref|ZP_07206943.1| ribonuclease HII [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851609|gb|EFK79309.1| ribonuclease HII [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 255

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/208 (41%), Positives = 135/208 (64%), Gaps = 3/208 (1%)

Query: 3   CNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62
              +  +   ++E  +  K +  +AG+DEVGRG LAGPVV AA+IL  +   F +NDSK+
Sbjct: 49  NEKLKFQNRLKIERDLWNKGIEYIAGVDEVGRGPLAGPVVTAAVILPHDFDIFEVNDSKQ 108

Query: 63  ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           +S KKREELY+KI   A+ +S+  + +  ID+ NI++AT  A+  A+E+L + P+  ++D
Sbjct: 109 LSEKKREELYKKILEKAVAVSVGLSDNNLIDEVNIYEATRLAMKQAIESLNITPQKIIVD 168

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
             +I  D       +IKGD+ S S+AAASI+AKVTRD LM+   + YP+YGF+ + GY T
Sbjct: 169 AMTI--DTKIPQLRLIKGDAKSASVAAASIVAKVTRDHLMQFYARIYPEYGFEKNDGYGT 226

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNLSV 209
            +H + ++ KG + IHR +F P++ + +
Sbjct: 227 KQHLEGLENKGVTPIHRQSFEPVKKILL 254


>gi|212692764|ref|ZP_03300892.1| hypothetical protein BACDOR_02262 [Bacteroides dorei DSM 17855]
 gi|237724942|ref|ZP_04555423.1| ribonuclease HII [Bacteroides sp. D4]
 gi|212664700|gb|EEB25272.1| hypothetical protein BACDOR_02262 [Bacteroides dorei DSM 17855]
 gi|229436680|gb|EEO46757.1| ribonuclease HII [Bacteroides dorei 5_1_36/D4]
          Length = 201

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/179 (41%), Positives = 106/179 (59%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++  +R  L E +   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPVDFKNELLNDSKQLTEHQRYALREIVEREALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + ID+ NI  A+  A++ AV+ L++ P+  LIDG    +        V+KGD   LS
Sbjct: 73  VTPEEIDEINILNASFLAMHRAVDQLKIRPQHLLIDGNRFKKYQDLPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   HK+YP Y ++S+ GYPT KH+  I+E G +  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNGLHKEYPFYDWNSNKGYPTKKHRAAIREYGTTPYHRMTFNLL 191


>gi|265754659|ref|ZP_06089711.1| ribonuclease HII [Bacteroides sp. 3_1_33FAA]
 gi|263234773|gb|EEZ20341.1| ribonuclease HII [Bacteroides sp. 3_1_33FAA]
          Length = 201

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/179 (41%), Positives = 106/179 (59%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++  +R  L E +   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPVDFKNELLNDSKQLTEHQRYALREIVEKEALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + ID+ NI  A+  A++ AV+ L++ P+  LIDG    +        V+KGD   LS
Sbjct: 73  VTPEEIDEINILNASFLAMHRAVDQLKIRPQHLLIDGNRFKKYQDLPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   HK+YP Y ++S+ GYPT KH+  I+E G +  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNGLHKEYPFYDWNSNKGYPTKKHRAAIREHGTTPYHRMTFNLL 191


>gi|114570742|ref|YP_757422.1| RNase HII [Maricaulis maris MCS10]
 gi|122315504|sp|Q0AMK3|RNH2_MARMM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|114341204|gb|ABI66484.1| RNase HII [Maricaulis maris MCS10]
          Length = 218

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 87/204 (42%), Positives = 123/204 (60%), Gaps = 7/204 (3%)

Query: 5   SIPERPHFELEAMVREKNMW---PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61
           +IP++ +      + +  M     +AG+DE GRG L+GPVV AA+ILDP     G+ DSK
Sbjct: 4   TIPQKDN----QSLNKAGMGNTVRIAGVDEAGRGPLSGPVVAAAVILDPTRPITGLGDSK 59

Query: 62  KISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
            +S ++R EL+  I ++A + I  A    ID+ NI  AT+ A+  AV  L V P   L+D
Sbjct: 60  ALSERRRRELFRLIRANAWVGIGIAEPAEIDRLNILHATMAAMRRAVARLPVRPTLVLVD 119

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           G  +P  LPC A A+IKGD+    I AASIIAK  RD LM  A +++P YGF+ H GYP+
Sbjct: 120 GNRLPPGLPCPAEAIIKGDAKEACIGAASIIAKTVRDDLMEQAARRFPGYGFEGHKGYPS 179

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLR 205
           A H+  ++  G   IHR ++ P+R
Sbjct: 180 AAHKAALETSGACPIHRRSYAPVR 203


>gi|254670416|emb|CBA05987.1| Ribonuclease HII [Neisseria meningitidis alpha153]
          Length = 194

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/182 (44%), Positives = 106/182 (58%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86
           AG+DE GRG L G V  AA+IL       G+ DSKK+S KKR+ L E I + A     +A
Sbjct: 6   AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKNQAAAWHVAA 65

Query: 87  -SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  + 
Sbjct: 66  ATPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P+R
Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185

Query: 206 NL 207
           NL
Sbjct: 186 NL 187


>gi|94310391|ref|YP_583601.1| ribonuclease HII [Cupriavidus metallidurans CH34]
 gi|189043647|sp|Q1LNE4|RNH2_RALME RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|93354243|gb|ABF08332.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Cupriavidus
           metallidurans CH34]
          Length = 226

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/188 (42%), Positives = 119/188 (63%), Gaps = 5/188 (2%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             + G+DE GRG LAGPV  AA++L+P     G+ DSK +S +KRE L+++I   A+   
Sbjct: 24  QRLCGVDEAGRGPLAGPVYAAAVVLNPARQIRGLADSKILSAEKREALFDRICDHALGWH 83

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLPCQAFAVIKG 139
           I+SAS + ID  NI  A++ A+  AV+ L    VIP    +DG   P+ +     A++KG
Sbjct: 84  IASASVEEIDSINILHASMLAMQRAVQGLAASGVIPDLVQVDGNRCPQ-VAFPVEAIVKG 142

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D+   +I+AASI+AKV RDR +   H++YP+YGFDSH GYPT +H   +++ G +  HR 
Sbjct: 143 DAKVRAISAASILAKVARDRELLKLHQEYPEYGFDSHFGYPTPQHFTALEQFGATPHHRR 202

Query: 200 TFRPLRNL 207
           +F P+R +
Sbjct: 203 SFAPVRKV 210


>gi|332678593|gb|AEE87722.1| Ribonuclease HII [Francisella cf. novicida Fx1]
          Length = 187

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/185 (43%), Positives = 116/185 (62%), Gaps = 2/185 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             + GIDE GRG L+GPVV A +ILD + I  G+ DSKK++ KKR+ LY++I + A   +
Sbjct: 1   MIILGIDEAGRGPLSGPVVAAGVILDRDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYT 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I   S Q ID+ NI +ATL A++    NL+      L+DG  +P +    + A++KGDS 
Sbjct: 61  IVEISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSK 119

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            + I+AASI+AKV RD +     + YP YGF  H GYPT +H + IK+ G   IHR +++
Sbjct: 120 IIEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYK 179

Query: 203 PLRNL 207
           P++ L
Sbjct: 180 PVQML 184


>gi|119898186|ref|YP_933399.1| ribonuclease HII [Azoarcus sp. BH72]
 gi|166225166|sp|A1K6Q7|RNH2_AZOSB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|119670599|emb|CAL94512.1| Ribonuclease H [Azoarcus sp. BH72]
          Length = 204

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/189 (41%), Positives = 112/189 (59%), Gaps = 2/189 (1%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
            + +  + G+DE GRG L GPVV AA+ILDP     G+ DSKK++ + R+ L   I   A
Sbjct: 4   SQRLRLICGVDEAGRGPLCGPVVAAAVILDPARPIDGLADSKKLTERARDRLAPLIRERA 63

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           +  +++ AS + ID+ NI  AT+ A+  AV  L V+P   LIDG   P  L   A AV+ 
Sbjct: 64  LAWAVAEASVEEIDRLNILHATMLAMQRAVSALSVLPGEVLIDGNRCPT-LAVPARAVVG 122

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD+   +I+AASI+AK  RD  M+  H++YP YG   H GYPTA H   ++  G +  +R
Sbjct: 123 GDASEPAISAASILAKTVRDAGMKALHEQYPHYGLADHKGYPTAGHLAALRRHGIADFYR 182

Query: 199 LTFRPLRNL 207
            +F P+R L
Sbjct: 183 RSFGPVREL 191


>gi|289550965|ref|YP_003471869.1| Ribonuclease HII [Staphylococcus lugdunensis HKU09-01]
 gi|289180497|gb|ADC87742.1| Ribonuclease HII [Staphylococcus lugdunensis HKU09-01]
          Length = 255

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 88/197 (44%), Positives = 124/197 (62%), Gaps = 4/197 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +E E +++++    + GIDEVGRG LAGPVV  A+IL+ N+   G+NDSKK+S   R +L
Sbjct: 61  YEQE-ILQQQPDAIICGIDEVGRGPLAGPVVACAVILNANHHYLGLNDSKKVSAVNRAQL 119

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            + + ++    +   AS   ID+ NI++AT  A+  A+  LQV P   LID  SI  D  
Sbjct: 120 NQDLMANVRGYAYGIASAAEIDQLNIYRATQVAMQRAINQLQVRPTHLLIDAMSI--DST 177

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               A+IKGD+ S+SIAAASI+AK  RD LMR   + YP YGFD +VGY T  H   +K+
Sbjct: 178 ISQTAIIKGDAKSVSIAAASIMAKEYRDHLMRDYAQVYPYYGFDKNVGYGTKAHLAGLKQ 237

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR TF P++++
Sbjct: 238 YGVTPIHRRTFEPVKSM 254


>gi|161870870|ref|YP_001600044.1| ribonuclease HII [Neisseria meningitidis 053442]
 gi|189043631|sp|A9M3R5|RNH2_NEIM0 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|161596423|gb|ABX74083.1| ribonuclease HII [Neisseria meningitidis 053442]
          Length = 194

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/182 (44%), Positives = 105/182 (57%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86
           AG+DE GRG L G V  AA+IL       G+ DSKK+S KKR+ L E I   A     +A
Sbjct: 6   AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKEQAAAWYVAA 65

Query: 87  -SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  + 
Sbjct: 66  ATPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLDIPAEAVVKGDSKIIE 125

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P+R
Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185

Query: 206 NL 207
           NL
Sbjct: 186 NL 187


>gi|56708338|ref|YP_170234.1| ribonuclease HII [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670809|ref|YP_667366.1| ribonuclease HII [Francisella tularensis subsp. tularensis FSC198]
 gi|134301623|ref|YP_001121591.1| ribonuclease HII [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|224457462|ref|ZP_03665935.1| ribonuclease HII [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254369606|ref|ZP_04985617.1| ribonuclease H [Francisella tularensis subsp. holarctica FSC022]
 gi|254370960|ref|ZP_04986964.1| ribonuclease H [Francisella tularensis subsp. tularensis FSC033]
 gi|254875160|ref|ZP_05247870.1| ribonuclease HII [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|81597296|sp|Q5NFF8|RNH2_FRATT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|123169324|sp|Q14GW0|RNH2_FRAT1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166225188|sp|A4IX19|RNH2_FRATW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|56604830|emb|CAG45911.1| Ribonuclease HII [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110321142|emb|CAL09294.1| Ribonuclease HII [Francisella tularensis subsp. tularensis FSC198]
 gi|134049400|gb|ABO46471.1| ribonuclease HII [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|151569202|gb|EDN34856.1| ribonuclease H [Francisella tularensis subsp. tularensis FSC033]
 gi|157122560|gb|EDO66695.1| ribonuclease H [Francisella tularensis subsp. holarctica FSC022]
 gi|254841159|gb|EET19595.1| ribonuclease HII [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159575|gb|ADA78966.1| ribonuclease HII [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 187

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/185 (43%), Positives = 116/185 (62%), Gaps = 2/185 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             + GIDE GRG L+GPVV A +ILD + I  G+ DSKK++ KKR+ LY++I + A   +
Sbjct: 1   MIILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYT 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I   S Q ID+ NI +ATL A++    NL+      L+DG  +P +    + A++KGDS 
Sbjct: 61  IVEISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSK 119

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            + I+AASI+AKV RD +     + YP YGF  H GYPT +H + IK+ G   IHR +++
Sbjct: 120 IIEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYK 179

Query: 203 PLRNL 207
           P++ L
Sbjct: 180 PVQVL 184


>gi|288800584|ref|ZP_06406042.1| ribonuclease HII [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332797|gb|EFC71277.1| ribonuclease HII [Prevotella sp. oral taxon 299 str. F0039]
          Length = 214

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/179 (41%), Positives = 105/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  N     +NDSK+++ K+R  L + I   AI  ++  
Sbjct: 26  AGCDEAGRGCLAGSVYAAAVILPQNYSHPYLNDSKQLTEKRRMILRKDIEKDAIAWAVGV 85

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + ID+ NI KA+  A++ A++ L+V P + +IDG             ++KGDS  LS
Sbjct: 86  VSPEEIDEINILKASFLAMHRAIDQLKVRPEALIIDGNRFTPYQNLPYTPIVKGDSKYLS 145

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H +YP Y +  + GYPT  H++ IK+ G +  HR++F  L
Sbjct: 146 IAAASILAKTYRDEYMEELHSQYPQYEWSKNKGYPTVAHREAIKKYGTTPFHRMSFNLL 204


>gi|221233322|ref|YP_002515758.1| ribonuclease HII [Caulobacter crescentus NA1000]
 gi|239977582|sp|B8GZ34|RNH2_CAUCN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|239977583|sp|P0CAW4|RNH2_CAUCR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|220962494|gb|ACL93850.1| ribonuclease HII [Caulobacter crescentus NA1000]
          Length = 211

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 95/201 (47%), Positives = 116/201 (57%), Gaps = 5/201 (2%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           +P  P   LE         PV G+DE GRG  AGPV   A+ILDP+ IP G+NDSKK+S 
Sbjct: 1   MPPGPDMTLELAC---GQAPVCGVDEAGRGPWAGPVSAGAVILDPDRIPKGLNDSKKLSA 57

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           K R  L E+I   AI   +  AS + I + NI  A   A+  AVE L V P  AL+DG  
Sbjct: 58  KARAALEEEIKDVAISWCVGLASIEEIAQLNILHAAGLAMRRAVEGLAVTPAFALVDGN- 116

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
               LPC    VIKGDS+S SIAAASI+AK  RDR+M  A   YP YGF  H GY    H
Sbjct: 117 YAFKLPCPVKTVIKGDSLSCSIAAASILAKEARDRIMIEADALYPGYGFAGHKGYHAKVH 176

Query: 185 QQVIKEKGPSCIHRLTFRPLR 205
            + ++  GPS IHRL + P++
Sbjct: 177 VEGLRRLGPSPIHRLGWAPVK 197


>gi|237747799|ref|ZP_04578279.1| ribonuclease HII [Oxalobacter formigenes OXCC13]
 gi|229379161|gb|EEO29252.1| ribonuclease HII [Oxalobacter formigenes OXCC13]
          Length = 219

 Score =  245 bits (627), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 82/190 (43%), Positives = 118/190 (62%), Gaps = 2/190 (1%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78
               +    G DE GRG +AGPV  AA+ILDP++   G+ DSKK+S  +R+EL  +I   
Sbjct: 23  YASGVTLFCGADEAGRGPIAGPVFAAAVILDPDHPIAGLKDSKKLSEHRRDELALEIKQY 82

Query: 79  A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137
           A   +I+  S + ID+ NI  A++ A+  A+E+L + P  ALIDG   P+ L   A A++
Sbjct: 83  ARAWAIAECSIEEIDELNILHASMLAMKRAIESLAIRPELALIDGNRCPK-LAIAAKAIV 141

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGD    +I+AASI+AK  RD +M   H++YP+YGFD H GYPTA H + +   G S +H
Sbjct: 142 KGDDKVPAISAASILAKTARDAVMLDLHRQYPEYGFDRHKGYPTAYHLEQLSIHGVSPVH 201

Query: 198 RLTFRPLRNL 207
           R T+ P+R +
Sbjct: 202 RKTYAPVRKI 211


>gi|325570947|ref|ZP_08146566.1| ribonuclease HII [Enterococcus casseliflavus ATCC 12755]
 gi|325156273|gb|EGC68457.1| ribonuclease HII [Enterococcus casseliflavus ATCC 12755]
          Length = 254

 Score =  245 bits (627), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 90/195 (46%), Positives = 123/195 (63%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E    ++    +AG+DEVGRG LAGPVV AA+IL       G+NDSK++S KKREEL+
Sbjct: 60  RFENEAFQQGARFIAGLDEVGRGPLAGPVVSAAVILPKECQILGLNDSKQLSAKKREELF 119

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I + A+ + I   S + ID+ NI++A+  A+  A+ +L V P   LID  +I  D+P 
Sbjct: 120 IEIQNKAVAVGIGVVSPEEIDRINIYQASRLAMKEALIDLAVKPEHLLIDAMTIETDIPQ 179

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           Q+  +IKGD+ S+SIAAASIIAKV RD LM+  H  YP YGFD + GY T  H + +   
Sbjct: 180 QS--LIKGDARSISIAAASIIAKVYRDNLMKDFHDVYPFYGFDQNAGYGTKVHLEGLAAH 237

Query: 192 GPSCIHRLTFRPLRN 206
           G   IHR TF P++ 
Sbjct: 238 GICPIHRKTFAPVKQ 252


>gi|258645842|ref|ZP_05733311.1| ribonuclease HII [Dialister invisus DSM 15470]
 gi|260403214|gb|EEW96761.1| ribonuclease HII [Dialister invisus DSM 15470]
          Length = 256

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 91/197 (46%), Positives = 134/197 (68%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +E E+   +K +  VAGIDEVGRG LAGPV VAA+IL P+    G+NDSKK++ ++REE+
Sbjct: 56  YEPESSFYKKGLEYVAGIDEVGRGPLAGPVTVAAVILKPHFFIAGLNDSKKVAPRRREEI 115

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            +KI  +A+ ISI S S + ID  NI+ AT++A+Y AV NL++ P++ ++D    P   P
Sbjct: 116 AKKIHETAVDISIVSLSPEEIDMRNIYAATMEAMYRAVRNLKIQPQAVIVDAM--PLHFP 173

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             + +++ GD+ S S+AAASI+AKV RD LM    K YP YGF  + GY TA+H + I+ 
Sbjct: 174 VPSLSLVHGDAKSASVAAASIVAKVHRDHLMDEYDKVYPGYGFSQNKGYGTAEHIEAIRT 233

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR +F P++++
Sbjct: 234 LGITPIHRKSFEPVKSM 250


>gi|218660707|ref|ZP_03516637.1| ribonuclease HII [Rhizobium etli IE4771]
          Length = 215

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 94/173 (54%), Positives = 128/173 (73%)

Query: 34  RGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDK 93
           RG LAGPVV AA+ILDP  IP G+NDSK++S ++REEL+ +I ++A +SI+S+S   ID+
Sbjct: 30  RGPLAGPVVAAAVILDPKRIPEGLNDSKQLSAQRREELFVQILATATVSIASSSSTRIDE 89

Query: 94  HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIA 153
            +I KA+LDA+  A+ +L V     L DG  +P  L C   AV+KGD+ S+SIAAASI+A
Sbjct: 90  TDIRKASLDAMRRAICSLAVPASYVLTDGLDVPPGLDCPGQAVVKGDARSVSIAAASIVA 149

Query: 154 KVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           KVTRDR+M  AH  +PDYGF +HVGY TA+H+  I++ GP  +HR++FRPLR 
Sbjct: 150 KVTRDRMMARAHNVFPDYGFAAHVGYGTAQHRAGIEKHGPCSLHRMSFRPLRK 202


>gi|103486453|ref|YP_616014.1| ribonuclease HII [Sphingopyxis alaskensis RB2256]
 gi|122985137|sp|Q1GUJ1|RNH2_SPHAL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|98976530|gb|ABF52681.1| Ribonuclease H [Sphingopyxis alaskensis RB2256]
          Length = 198

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/184 (41%), Positives = 112/184 (60%), Gaps = 2/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           + G+DE GRG LAGPVV AA++L       G++DSKK+S ++R  L   I +     I  
Sbjct: 16  IVGVDEAGRGPLAGPVVAAAVLLCEGG-IAGLDDSKKLSARRRGALESAIRAQCRWGIGE 74

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           AS + ID+ NI +AT  A+  AVE L   P   L+DG  +P     QA A++ GD++   
Sbjct: 75  ASVEEIDRINILQATFLAMTRAVEALGFEPAEVLVDGNRLPR-WRYQARAIVGGDALHPC 133

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AK  RDRLM  A + YP +G++S++GY TA+H   ++  GP+  HR +F P+ 
Sbjct: 134 ISAASILAKQHRDRLMIAAAQDYPAFGWESNMGYGTAQHLAALRRHGPTPHHRTSFAPVA 193

Query: 206 NLSV 209
            L +
Sbjct: 194 QLQL 197


>gi|224536639|ref|ZP_03677178.1| hypothetical protein BACCELL_01515 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521730|gb|EEF90835.1| hypothetical protein BACCELL_01515 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 201

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 75/179 (41%), Positives = 105/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++  +R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEHQRYALREVIEKEALAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + IDK NI  A+  A++ AV+ L++ P+  LIDG    +        VIKGD   LS
Sbjct: 73  VSPEEIDKINILNASFLAMHRAVDQLKMRPQHLLIDGNRFKKYQDLPHTTVIKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAAS++AK  RD  M   H+++P Y +D + GYPT KH+  I E+G +  HR+TF  L
Sbjct: 133 IAAASVLAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAISERGTTPYHRMTFNLL 191


>gi|237709459|ref|ZP_04539940.1| ribonuclease HII [Bacteroides sp. 9_1_42FAA]
 gi|229456515|gb|EEO62236.1| ribonuclease HII [Bacteroides sp. 9_1_42FAA]
          Length = 201

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/179 (41%), Positives = 106/179 (59%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++  +R  L E +   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPVDFKNELLNDSKQLTEHQRYVLREIVEREALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + ID+ NI  A+  A++ AV+ L++ P+  LIDG    +        V+KGD   LS
Sbjct: 73  VTPEEIDEINILNASFLAMHRAVDQLKIRPQHLLIDGNRFKKYQDLPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   HK+YP Y ++S+ GYPT KH+  I+E G +  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNGLHKEYPFYDWNSNKGYPTKKHRAAIREYGTTPYHRMTFNLL 191


>gi|329850294|ref|ZP_08265139.1| ribonuclease HII family protein [Asticcacaulis biprosthecum C19]
 gi|328840609|gb|EGF90180.1| ribonuclease HII family protein [Asticcacaulis biprosthecum C19]
          Length = 204

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 89/200 (44%), Positives = 115/200 (57%), Gaps = 5/200 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E  +       V G+DE GRG  AGP+ VAA+ILDP   P GI+DSK ++  +R +
Sbjct: 3   DFSHEQRIA----GLVCGVDEAGRGPCAGPLCVAAVILDPARTPEGIDDSKALTEARRFQ 58

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L   I  +AI  S+ + S   ID  NI  ATL+ +  AV  L      ALIDG   P+ L
Sbjct: 59  LEPLIKHAAIAWSVITMSTDDIDSMNILAATLEGMSRAVMALNPNAHHALIDGNRCPKQL 118

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              A AVI GD++SLSIAAASI+AK  RDR+M      YP YGF  H GY T  H + ++
Sbjct: 119 SISATAVIGGDALSLSIAAASILAKTARDRIMIELDAVYPQYGFKRHKGYQTGAHLEALR 178

Query: 190 EKGPSCIHRLTFRPLRNLSV 209
             GPS +HR ++  LR LS+
Sbjct: 179 VHGPSPVHRKSWATLRQLSL 198


>gi|325133106|gb|EGC55778.1| ribonuclease HII [Neisseria meningitidis M6190]
          Length = 194

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 81/182 (44%), Positives = 106/182 (58%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86
           AG+DE GRG L G V  AA+IL       G+ DSKK+S KKR+ L E I + A     +A
Sbjct: 6   AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKNQAAAWHVAA 65

Query: 87  -SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  + 
Sbjct: 66  ATPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHLGIPAEAVVKGDSKIIE 125

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P+R
Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185

Query: 206 NL 207
           NL
Sbjct: 186 NL 187


>gi|300113760|ref|YP_003760335.1| ribonuclease H [Nitrosococcus watsonii C-113]
 gi|299539697|gb|ADJ28014.1| Ribonuclease H [Nitrosococcus watsonii C-113]
          Length = 195

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 82/183 (44%), Positives = 110/183 (60%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DEVGRG LAGPV+  A+ILDP     G+ DSK+++   RE L   I   AI  ++ 
Sbjct: 10  IAGVDEVGRGPLAGPVIAGAVILDPERPISGVKDSKQLTAPARERLAALIQVQAIAWALG 69

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    ID+ NI +A+L A+  A+  L V+P   L+DGR  P  + C   A++KGD   +
Sbjct: 70  RAEAVEIDQLNIFQASLLAMERAIAALSVVPDLVLVDGRHCPLTV-CPVRAIVKGDQRVM 128

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I AASI+AKV RD  M    + YP YGF +H GYPT  H   +K  GP  IHR +FRP+
Sbjct: 129 AIGAASIVAKVARDAEMIAFEESYPGYGFGTHKGYPTRAHLAALKALGPCSIHRRSFRPV 188

Query: 205 RNL 207
           R  
Sbjct: 189 RRF 191


>gi|325954163|ref|YP_004237823.1| ribonuclease H [Weeksella virosa DSM 16922]
 gi|323436781|gb|ADX67245.1| Ribonuclease H [Weeksella virosa DSM 16922]
          Length = 199

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 71/182 (39%), Positives = 103/182 (56%), Gaps = 1/182 (0%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
           NM    G DE GRG LAGPV+ AA++         I DSK ++  KR  L E I ++ + 
Sbjct: 7   NMDYECGCDEAGRGCLAGPVIAAAVVFPNEFFDSTIIDSKLLTKIKRNNLRELINTNVLT 66

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             I    +Q ID+ NI  A+ +A++ A+  L + P   ++DG             ++KGD
Sbjct: 67  AEIGFVDNQEIDELNILNASFEAMHRAINKLSIEPDFIIVDGNRFKPYKNIPHECIVKGD 126

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           +  +SIAAASI+AK  RD  M+  HK+YP Y +D + GYPT +H++ I+E G S  HR +
Sbjct: 127 AKYISIAAASILAKTYRDEYMQKIHKEYPMYHWDKNKGYPTKQHREAIREFGVSPYHRTS 186

Query: 201 FR 202
           FR
Sbjct: 187 FR 188


>gi|256847171|ref|ZP_05552617.1| ribonuclease HII [Lactobacillus coleohominis 101-4-CHN]
 gi|256715835|gb|EEU30810.1| ribonuclease HII [Lactobacillus coleohominis 101-4-CHN]
          Length = 259

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 81/195 (41%), Positives = 117/195 (60%), Gaps = 3/195 (1%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F+ E  + +     VAG+DEVGRG LAGPVV  A+ILD       + DSK +S ++RE 
Sbjct: 60  RFKYERALWQAGNQYVAGMDEVGRGPLAGPVVTCAVILDDRFDLVEVTDSKMLSRRERER 119

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY +I   A+ +SI+  S   ID+ NI++AT DA+  AV  L+  P   ++D   +P  L
Sbjct: 120 LYLRIVDEAVEVSIAVNSPAVIDQLNIYRATQDAMIRAVHELRHQPSHLIVDA--VPLSL 177

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                 +IKGD  S+S+AAASI+AK  RD LM    + YP Y F++++GY T +H   ++
Sbjct: 178 SIPQTTLIKGDQKSISVAAASIVAKEYRDHLMADYARLYPGYDFENNMGYGTKQHLAGLE 237

Query: 190 EKGPSCIHRLTFRPL 204
           + G + IHR TF P+
Sbjct: 238 KHGVTPIHRRTFAPV 252


>gi|56551900|ref|YP_162739.1| ribonuclease H [Zymomonas mobilis subsp. mobilis ZM4]
 gi|81355085|sp|Q5NNT2|RNH2_ZYMMO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|56543474|gb|AAV89628.1| Ribonuclease H [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 215

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 87/202 (43%), Positives = 123/202 (60%), Gaps = 9/202 (4%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P    E  +       V G+DEVGRG LAGPV+  A+ L   +IP GINDSKK++ ++R 
Sbjct: 14  PDLSYEDRIE----GVVFGVDEVGRGPLAGPVMAGAVYLHREHIPEGINDSKKLTARRRH 69

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL----QVIPRSALIDGRSI 125
            L + + + A  +   A    ID+ NI +A+L A+  AVE L       P   L+DGR I
Sbjct: 70  LLSDMLHNQADYATGMADVHEIDRINIRQASLLAMKRAVEALIQKIGREPDCILVDGRDI 129

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P D P  +  +IKGDS+SLSIAAASI+AKV RD +M  A ++YP YG++ ++GYPT +H+
Sbjct: 130 P-DWPWPSLPIIKGDSLSLSIAAASIVAKVERDEIMVKASQEYPGYGWEHNMGYPTKEHR 188

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
           + I+   P+  HR +F P+R  
Sbjct: 189 EAIQRLKPTKFHRRSFSPIRQF 210


>gi|313675462|ref|YP_004053458.1| RNAse hii [Marivirga tractuosa DSM 4126]
 gi|312942160|gb|ADR21350.1| RNase HII [Marivirga tractuosa DSM 4126]
          Length = 209

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 84/192 (43%), Positives = 115/192 (59%), Gaps = 2/192 (1%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
            KN    AG DEVGRG LAGPVV +A+IL  N     + DSKK+S KKR EL + I   +
Sbjct: 8   NKNNKFEAGCDEVGRGCLAGPVVASAVILPTNFSHPYLTDSKKLSAKKRAELVDVIKKES 67

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           I  +I+  S + ID+ NI KA+  A++ A++ L+  P   L+DG             VIK
Sbjct: 68  IAWAIAECSPEEIDQVNILKASFWAMHKALDQLKQKPDFLLVDGNRFTPYPEIPHECVIK 127

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GDS   SIAAASI+AK  RD LMR   + +P YG++ +VGYPT +H+  I++ G +  HR
Sbjct: 128 GDSKYFSIAAASILAKEYRDNLMRDLAEIHPHYGWERNVGYPTKQHRAGIQKFGATEHHR 187

Query: 199 LTFRPL-RNLSV 209
            +F+ L R L +
Sbjct: 188 KSFQLLPRQLEI 199


>gi|300024712|ref|YP_003757323.1| ribonuclease H [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526533|gb|ADJ25002.1| Ribonuclease H [Hyphomicrobium denitrificans ATCC 51888]
          Length = 274

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 81/200 (40%), Positives = 113/200 (56%), Gaps = 2/200 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           R     E  + +  +  VAG+DE G   LAGPV  AA+I  P      ++DSKK+    R
Sbjct: 58  RKLLRFETSLWKTGVQFVAGVDEAGMSPLAGPVSAAAVIFAPGTRIADVDDSKKLDAATR 117

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           + L  +I ++AI  S+  A  + ID+ NI+ A L A+  AVE L   P+  LID R I +
Sbjct: 118 DRLAIEIKATAIAWSVGFAEVEEIDRINIYWAGLLAMRRAVEGLATQPQHVLIDARRI-K 176

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           DL      ++KGD+ SL+IAAASI+AK  RD LMR     +P YGF  H GYP  +H   
Sbjct: 177 DLAIPQQPIVKGDAKSLTIAAASILAKTARDALMRKLDGDHPGYGFSKHKGYPVREHLAA 236

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           + + G S +HR +F P+R +
Sbjct: 237 LTKLGASPVHRRSFAPVRAV 256


>gi|241668184|ref|ZP_04755762.1| ribonuclease HII [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876719|ref|ZP_05249429.1| ribonuclease HII [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842740|gb|EET21154.1| ribonuclease HII [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 185

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 80/185 (43%), Positives = 115/185 (62%), Gaps = 2/185 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             + GIDE GRG L+GPVV A +ILDP     G++DSKK++ KKR+ LYE IT+ A   +
Sbjct: 1   MIILGIDEAGRGPLSGPVVAAGVILDPEKTIDGLSDSKKLTEKKRQSLYEVITAHAKAYT 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I   S Q ID+ NI +ATL A+    +NL+      L+DG  +P +    + A++KGDS 
Sbjct: 61  IVEVSPQQIDQLNILQATLKAMNQVADNLKGQFDKVLVDGNKLP-NWDYNSEAIVKGDSK 119

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKV RD +     + +P YGF  H GYPT +H + I++ G   IHR +++
Sbjct: 120 VQEISAASILAKVHRDNICLEHDRLFPQYGFAKHKGYPTKEHLENIRKYGVLNIHRKSYK 179

Query: 203 PLRNL 207
           P++ L
Sbjct: 180 PIQLL 184


>gi|73748590|ref|YP_307829.1| ribonuclease HII [Dehalococcoides sp. CBDB1]
 gi|97182414|sp|Q3ZXD6|RNH2_DEHSC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|73660306|emb|CAI82913.1| ribonuclease HII [Dehalococcoides sp. CBDB1]
          Length = 212

 Score =  244 bits (625), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 83/202 (41%), Positives = 115/202 (56%), Gaps = 5/202 (2%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHK 66
           P    E ++R++    +AG+DE GRG LAGPVV  A+I+ P    +    + DSK +S  
Sbjct: 8   PSRAEEKLLRKQGFILIAGLDEAGRGCLAGPVVAGAVIMPPRLKGDWVEMVRDSKVLSPA 67

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           KRE LY  I S A+   + +  ++ ID   I  AT  A+  AVE+L   P   L+D   +
Sbjct: 68  KREYLYCHIVSMAVTFGVGAVDNEQIDSMGIAPATRLAMKQAVEDLTCQPDFLLVDYLKL 127

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P D+P     ++ GD++  SIA ASI+AKV+RDRLM     +YP Y    H GY TA H 
Sbjct: 128 P-DIPLPQKGIVNGDALCFSIACASIVAKVSRDRLMSKLDMEYPGYYLAKHKGYGTALHV 186

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
           + I +KG S IHR TF PL+ +
Sbjct: 187 ECICQKGISPIHRRTFAPLKGM 208


>gi|189464553|ref|ZP_03013338.1| hypothetical protein BACINT_00896 [Bacteroides intestinalis DSM
           17393]
 gi|189438343|gb|EDV07328.1| hypothetical protein BACINT_00896 [Bacteroides intestinalis DSM
           17393]
          Length = 201

 Score =  244 bits (625), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/179 (41%), Positives = 105/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++  +R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEHQRYALREVIEKEALAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + IDK NI  A+  A++ AV+ L++ P+  LIDG    +        V+KGD   LS
Sbjct: 73  VSPEEIDKINILNASFLAMHRAVDQLKMRPQHLLIDGNRFKKYQDLPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H++YP Y ++ + GYPT KH+  I E+G +  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPYYDWNHNKGYPTKKHRATIAERGTTPYHRMTFNLL 191


>gi|134094574|ref|YP_001099649.1| ribonuclease HII [Herminiimonas arsenicoxydans]
 gi|189043605|sp|A4G4T5|RNH2_HERAR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|133738477|emb|CAL61522.1| Ribonuclease HII (RNase HII) [Herminiimonas arsenicoxydans]
          Length = 211

 Score =  244 bits (625), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 85/184 (46%), Positives = 114/184 (61%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            + G+DE GRG LAGPV  AA+ILDP     G+ DSKK+S  +R+ L   I + A+  SI
Sbjct: 19  IICGVDEAGRGPLAGPVFAAAVILDPMRPIDGLCDSKKLSEVRRDALAIDIKAHALSWSI 78

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +  S Q ID  NI +AT+ A+  AVE L + P  ALIDG   P  +  +A A+IKGD   
Sbjct: 79  AQCSEQEIDSLNILQATMLAMRRAVEGLHIQPTLALIDGNRCPVMV-VRAEAIIKGDDKV 137

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AK  RD  + + H  YP Y FD H GYPTA H + ++E G S +HR ++ P
Sbjct: 138 QAISAASILAKTARDHALGLLHIAYPHYAFDQHKGYPTALHLERLREHGVSPVHRKSYAP 197

Query: 204 LRNL 207
           +R L
Sbjct: 198 VRAL 201


>gi|254373232|ref|ZP_04988721.1| ribonuclease HII [Francisella tularensis subsp. novicida GA99-3549]
 gi|151570959|gb|EDN36613.1| ribonuclease HII [Francisella novicida GA99-3549]
          Length = 185

 Score =  244 bits (625), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 80/185 (43%), Positives = 116/185 (62%), Gaps = 2/185 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             + GIDE GRG L+GPVV A +ILD + I  G+ DSKK++ KKR+ LY++I + A   +
Sbjct: 1   MIILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYT 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I   S Q ID+ NI +ATL A++    NL+      L+DG  +P +    + A++KGDS 
Sbjct: 61  IVEISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWNYNSEAIVKGDSK 119

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            + I+AASI+AKV RD +     + YP YGF  H GYPT +H + IK+ G   IHR +++
Sbjct: 120 IIEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYK 179

Query: 203 PLRNL 207
           P++ L
Sbjct: 180 PIQLL 184


>gi|241761783|ref|ZP_04759869.1| Ribonuclease H [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241373697|gb|EER63257.1| Ribonuclease H [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 215

 Score =  244 bits (625), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 87/202 (43%), Positives = 124/202 (61%), Gaps = 9/202 (4%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P    E  +       V G+DEVGRG LAGPV+  A+ L   +IP GINDSKK++ ++R 
Sbjct: 14  PDLSYEDRIE----GVVFGVDEVGRGPLAGPVMAGAVYLHREHIPEGINDSKKLTARRRH 69

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL----QVIPRSALIDGRSI 125
            L + + + A  +   A+   ID+ NI +A+L A+  AVE L       P   L+DGR I
Sbjct: 70  LLSDMLHNQADYATGMANVHEIDRINIRQASLLAMKRAVEALIQKIGREPDCILVDGRDI 129

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P D P  +  +IKGDS+SLSIAAASI+AKV RD +M  A ++YP YG++ ++GYPT +H+
Sbjct: 130 P-DWPWPSLPIIKGDSLSLSIAAASIVAKVERDEIMVKASQEYPGYGWEHNMGYPTKEHR 188

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
           + I+   P+  HR +F P+R  
Sbjct: 189 EAIQRLKPTKFHRRSFSPIRQF 210


>gi|46201021|ref|ZP_00055903.2| COG0164: Ribonuclease HII [Magnetospirillum magnetotacticum MS-1]
          Length = 201

 Score =  244 bits (625), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 88/200 (44%), Positives = 118/200 (59%), Gaps = 9/200 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKIS 64
            P   LE+ +       V GIDEVGRG LAGPVV AA+ILD   +P      ++DSKK+S
Sbjct: 1   MPDLALESEIG----GIVCGIDEVGRGPLAGPVVAAAVILDAARLPKALLDRLDDSKKLS 56

Query: 65  HKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
            + REEL E + ++A I    AS   ID+ NI +AT  A+  A + L      AL+DG  
Sbjct: 57  KRNREELAELVPATATIGFGEASVDEIDRLNILQATFLAMRRAYDALGRECGHALVDGNR 116

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
            P  LPC    V+ GD ISLSIAAAS++AKV RD LM      +P++G++ + GY TA+H
Sbjct: 117 -PPRLPCPIRCVVGGDGISLSIAAASVVAKVRRDGLMAELALAHPEFGWERNAGYGTAEH 175

Query: 185 QQVIKEKGPSCIHRLTFRPL 204
              +K  GP+  HR +F P+
Sbjct: 176 LDALKRLGPTPHHRRSFAPV 195


>gi|300311507|ref|YP_003775599.1| ribonuclease HII protein [Herbaspirillum seropedicae SmR1]
 gi|300074292|gb|ADJ63691.1| ribonuclease HII protein [Herbaspirillum seropedicae SmR1]
          Length = 210

 Score =  244 bits (625), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 78/184 (42%), Positives = 116/184 (63%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            + G+DE GRG LAGPV  AA+ILDP     G+ DSKK++   R+ L  +I +SA+  ++
Sbjct: 19  IICGVDEAGRGPLAGPVFAAAVILDPARPVKGLRDSKKLTEAARDSLALEIKASALAWAV 78

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +S + Q ID+ NI  A++ A+  AVE L  +P  ALIDG   P  +  ++ A++KGD   
Sbjct: 79  ASCNEQEIDELNILHASMLAMRRAVEALSTLPTLALIDGNRCPV-MSIRSEAIVKGDDKV 137

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AK  RD  + + H  YP YGFD H GYPT  H ++++  G S +HR ++ P
Sbjct: 138 PAISAASILAKTARDAALMVLHDTYPHYGFDRHKGYPTPLHLEMLRLHGVSPVHRRSYAP 197

Query: 204 LRNL 207
           ++ L
Sbjct: 198 VKAL 201


>gi|89256503|ref|YP_513865.1| ribonuclease HII [Francisella tularensis subsp. holarctica LVS]
 gi|115314935|ref|YP_763658.1| ribonuclease HII [Francisella tularensis subsp. holarctica OSU18]
 gi|156502614|ref|YP_001428679.1| ribonuclease HII [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|254367835|ref|ZP_04983855.1| ribonuclease HII [Francisella tularensis subsp. holarctica 257]
 gi|290953972|ref|ZP_06558593.1| ribonuclease HII [Francisella tularensis subsp. holarctica URFT1]
 gi|295312649|ref|ZP_06803399.1| ribonuclease HII [Francisella tularensis subsp. holarctica URFT1]
 gi|122325051|sp|Q0BLL3|RNH2_FRATO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|122500629|sp|Q2A337|RNH2_FRATH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166225186|sp|A7NCM0|RNH2_FRATF RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|89144334|emb|CAJ79621.1| Ribonuclease HII [Francisella tularensis subsp. holarctica LVS]
 gi|115129834|gb|ABI83021.1| ribonuclease H [Francisella tularensis subsp. holarctica OSU18]
 gi|134253645|gb|EBA52739.1| ribonuclease HII [Francisella tularensis subsp. holarctica 257]
 gi|156253217|gb|ABU61723.1| ribonuclease HII [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 187

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 81/185 (43%), Positives = 116/185 (62%), Gaps = 2/185 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             + GIDE GRG L+GPVV A +ILD + I  G+ DSKK++ KKR+ LY++I + A   +
Sbjct: 1   MIILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYT 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I   S Q ID+ NI +ATL AI+    NL+      L+DG  +P +    + A++KGDS 
Sbjct: 61  IVEISPQQIDELNILQATLKAIHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSK 119

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            + I+AASI+AKV RD +     + YP YGF  H GYPT +H + IK+ G   IHR +++
Sbjct: 120 IIEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYK 179

Query: 203 PLRNL 207
           P++ L
Sbjct: 180 PVQVL 184


>gi|187931769|ref|YP_001891754.1| ribonuclease HII [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|238691569|sp|B2SGW7|RNH2_FRATM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|187712678|gb|ACD30975.1| ribonuclease HII [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 187

 Score =  244 bits (624), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 79/185 (42%), Positives = 116/185 (62%), Gaps = 2/185 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             + GIDE GRG L+GPVV A +ILD + I  G+ DSKK++ KKR+ LY++I + A   +
Sbjct: 1   MIILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYT 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I   + Q ID+ NI +ATL A++    NL+      L+DG  +P +    + A++KGDS 
Sbjct: 61  IVEINPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSK 119

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            + I+AASI+AKV RD +     + YP YGF  H GYPT +H + IK+ G   IHR +++
Sbjct: 120 IIEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYK 179

Query: 203 PLRNL 207
           P++ L
Sbjct: 180 PVQVL 184


>gi|118497878|ref|YP_898928.1| ribonuclease HII [Francisella tularensis subsp. novicida U112]
 gi|194323851|ref|ZP_03057627.1| ribonuclease HII [Francisella tularensis subsp. novicida FTE]
 gi|166225187|sp|A0Q7F9|RNH2_FRATN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|118423784|gb|ABK90174.1| ribonuclease HII [Francisella novicida U112]
 gi|194322215|gb|EDX19697.1| ribonuclease HII [Francisella tularensis subsp. novicida FTE]
          Length = 185

 Score =  244 bits (624), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 80/185 (43%), Positives = 116/185 (62%), Gaps = 2/185 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             + GIDE GRG L+GPVV A +ILD + I  G+ DSKK++ KKR+ LY++I + A   +
Sbjct: 1   MIILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYT 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I   S Q ID+ NI +ATL A++    NL+      L+DG  +P +    + A++KGDS 
Sbjct: 61  IVEISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSK 119

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            + I+AASI+AKV RD +     + YP YGF  H GYPT +H + IK+ G   IHR +++
Sbjct: 120 IIEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYK 179

Query: 203 PLRNL 207
           P++ L
Sbjct: 180 PIQLL 184


>gi|269959037|ref|YP_003328826.1| ribonuclease HII [Anaplasma centrale str. Israel]
 gi|269848868|gb|ACZ49512.1| ribonuclease HII [Anaplasma centrale str. Israel]
          Length = 223

 Score =  244 bits (624), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 87/202 (43%), Positives = 121/202 (59%), Gaps = 3/202 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHK 66
            P F +E  ++   +  + G+DEVG GA+AGPVV AA+ L          I DSK +S K
Sbjct: 1   MPSFAIEDQLKSDTISVIVGVDEVGYGAIAGPVVAAAVYLPEREHGYIGDIKDSKMLSPK 60

Query: 67  KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           KR+EL+ KI S A   +  A    I+KHNI  A+  ++  A++NL V     L+DG   P
Sbjct: 61  KRDELFCKIVSHAKYGVGFARVCEIEKHNILVASHISMKRALQNLGVKADLVLVDGSRTP 120

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            +LP     ++ GDSIS SIAAASI+AKVTRDR M+  H+++P+YG++ + GY T  H  
Sbjct: 121 -NLPWAIKTIVGGDSISTSIAAASIVAKVTRDRFMKRLHEQHPEYGWNQNCGYGTKAHMI 179

Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208
            IK  G +  HR TF P++ LS
Sbjct: 180 SIKLHGKTTHHRSTFAPVKQLS 201


>gi|148656899|ref|YP_001277104.1| ribonuclease HII [Roseiflexus sp. RS-1]
 gi|189043651|sp|A5UX01|RNH2_ROSS1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|148569009|gb|ABQ91154.1| Ribonuclease H [Roseiflexus sp. RS-1]
          Length = 227

 Score =  244 bits (624), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 90/201 (44%), Positives = 120/201 (59%), Gaps = 7/201 (3%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN-----NIPFGINDSKKIS 64
           P  E E  +R      +AG+DE GRG LAGPVV AA+IL        ++  G+ DSK +S
Sbjct: 6   PTVEEERALRAAGYRAIAGLDEAGRGCLAGPVVAAAVILPDAVIDTPDVLDGVADSKMLS 65

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
             +R +L+E+ITS A+  ++ +     ID H I  AT  A+  A+  L     + LID  
Sbjct: 66  PAQRADLFERITSLAVAWAVGATPAHIIDSHGILPATRLAMQVALLRLPRPADALLIDAV 125

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           ++ ++ P    A+IKGD+  LSIAAASIIAKVTRDRLM      +P YGF SH GY T +
Sbjct: 126 TL-DNWPLPQRALIKGDARCLSIAAASIIAKVTRDRLMDALDACWPQYGFASHKGYGTVQ 184

Query: 184 HQQVIKEKGPSCIHRLTFRPL 204
           HQQ ++  GP+  HR TFRPL
Sbjct: 185 HQQALRRYGPTPHHRRTFRPL 205


>gi|308048683|ref|YP_003912249.1| RNase HII [Ferrimonas balearica DSM 9799]
 gi|307630873|gb|ADN75175.1| RNase HII [Ferrimonas balearica DSM 9799]
          Length = 191

 Score =  244 bits (624), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 85/184 (46%), Positives = 114/184 (61%), Gaps = 1/184 (0%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             +AG+DEVGRG L G VV AA+ILDPNN   G+ DSKK+S K+RE LY +I   A+   
Sbjct: 3   RLIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLRDSKKLSEKRREALYHEIREKALAWC 62

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           ++ AS   ID+ NI  AT+ A+  AV  L V P    +DG   P+     A A++KGD  
Sbjct: 63  VARASVAEIDQLNILHATMLAMQRAVAGLPVQPDFVRVDGNRCPDFGGIGAEALVKGDDK 122

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +I+AASI+AKVTRD  M+   +++P YGF +H GYPTA H   + E G    HR +F+
Sbjct: 123 EPAISAASILAKVTRDEEMKALDQRHPQYGFANHKGYPTAAHLAALAEHGALPEHRTSFK 182

Query: 203 PLRN 206
           P+R 
Sbjct: 183 PVRR 186


>gi|167627613|ref|YP_001678113.1| ribonuclease HII [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|189043598|sp|B0TYD6|RNH2_FRAP2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|167597614|gb|ABZ87612.1| Ribonuclease H [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 185

 Score =  244 bits (624), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 80/185 (43%), Positives = 114/185 (61%), Gaps = 2/185 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             + GIDE GRG L+GPVV A +ILDP     G+ DSKK++ KKR+ LYE IT+ A   +
Sbjct: 1   MIILGIDEAGRGPLSGPVVAAGVILDPEKTIDGLADSKKLTEKKRQSLYEVITAHAKAYT 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I   S Q ID+ NI +ATL A+    +NL+      L+DG  +P +    + A++KGDS 
Sbjct: 61  IVEVSPQQIDQLNILQATLKAMNQVADNLKGQFDKVLVDGNKLP-NWDYNSEAIVKGDSK 119

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKV RD +     + +P YGF  H GYPT +H + I++ G   IHR +++
Sbjct: 120 VQEISAASILAKVHRDNICLEHDRLFPQYGFAKHKGYPTKEHLENIRKYGVLNIHRKSYK 179

Query: 203 PLRNL 207
           P++ L
Sbjct: 180 PIQLL 184


>gi|314936593|ref|ZP_07843940.1| ribonuclease HII [Staphylococcus hominis subsp. hominis C80]
 gi|313655212|gb|EFS18957.1| ribonuclease HII [Staphylococcus hominis subsp. hominis C80]
          Length = 255

 Score =  244 bits (624), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 81/196 (41%), Positives = 117/196 (59%), Gaps = 4/196 (2%)

Query: 14  LEAMVREKN-MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
            E  + + N    + GIDEVGRG LAGPVV  A+IL+  +   G++DSKK+S  KR+ L 
Sbjct: 61  YENKILKDNPNALICGIDEVGRGPLAGPVVACAVILNKEHQYLGLDDSKKVSATKRKILN 120

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E++       +   AS + ID+ NI+ AT  A+  A+  L+  P   LID  ++   +P 
Sbjct: 121 EQLKEGVYDYAYGIASAEEIDEFNIYNATKLAMERAINQLKQQPNHLLIDAMTLDNAMP- 179

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASI+AK  RD LM     KYP Y F+ +VGY T  H Q +K+ 
Sbjct: 180 -QTSIIKGDAKSVSIAAASIMAKEYRDGLMAEVALKYPGYDFEKNVGYGTKSHLQGLKQL 238

Query: 192 GPSCIHRLTFRPLRNL 207
           G +  HR TF P++++
Sbjct: 239 GITPYHRKTFEPVKSM 254


>gi|261378092|ref|ZP_05982665.1| ribonuclease HII [Neisseria cinerea ATCC 14685]
 gi|269145542|gb|EEZ71960.1| ribonuclease HII [Neisseria cinerea ATCC 14685]
          Length = 194

 Score =  244 bits (624), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 80/182 (43%), Positives = 105/182 (57%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86
           AG+DE GRG L G V  AA+IL       G+ DSKK+S KKR+ L + I   A     +A
Sbjct: 6   AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAKMIKEQAAAWHVAA 65

Query: 87  -SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  + 
Sbjct: 66  ATPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLGIPAEAVVKGDSKIIE 125

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P+R
Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185

Query: 206 NL 207
           NL
Sbjct: 186 NL 187


>gi|262382588|ref|ZP_06075725.1| ribonuclease HII [Bacteroides sp. 2_1_33B]
 gi|262295466|gb|EEY83397.1| ribonuclease HII [Bacteroides sp. 2_1_33B]
          Length = 199

 Score =  244 bits (624), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 104/185 (56%), Gaps = 2/185 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK++S KKR +L   I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGAVFAAAVILPEDFKNQNLNDSKQLSEKKRYKLRPVIEREAIAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + IDK NI KA+  A++ A+E L+V P   LIDG             V+KGD   LS
Sbjct: 73  VSPEEIDKINILKASFLAMHRAIEQLKVRPEHLLIDGNRFTPYPDIPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL- 204
           IAAAS++AK  RD  M     +YP Y +  + GYPT  H++ I+E G +  HR TF  L 
Sbjct: 133 IAAASVLAKTYRDDYMNELALEYPAYHWLDNKGYPTKAHREAIRECGITPYHRKTFTLLP 192

Query: 205 RNLSV 209
             L++
Sbjct: 193 EQLTL 197


>gi|157803394|ref|YP_001491943.1| ribonuclease HII [Rickettsia canadensis str. McKiel]
 gi|166226648|sp|A8EXS5|RNH2_RICCK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157784657|gb|ABV73158.1| ribonuclease HII [Rickettsia canadensis str. McKiel]
          Length = 196

 Score =  244 bits (624), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 91/191 (47%), Positives = 120/191 (62%), Gaps = 5/191 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            + E   +E   + VAGIDE GRG LAGPVV +A+++D  NI  GI DSKK+S +KRE L
Sbjct: 6   LQYEKKYQE---YIVAGIDEAGRGPLAGPVVASAVVIDNTNIITGIKDSKKLSKRKRELL 62

Query: 72  YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           YE+ITS+ I S +  SH  ID+ NI +AT  A   A  NL + P   L+DG     D   
Sbjct: 63  YEQITSNYIWSTAIISHTEIDEINILEATKKACSIAAANLTIKPEIVLVDGNMQFND--K 120

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +  ++IKGD++SLSIAAASI+AK+TRDRLM     ++P Y +  + GY T +H Q I   
Sbjct: 121 RFVSIIKGDNLSLSIAAASIVAKITRDRLMLDLSTEFPQYLWYKNSGYGTKEHIQAINTH 180

Query: 192 GPSCIHRLTFR 202
           G S  HR +FR
Sbjct: 181 GLSPYHRKSFR 191


>gi|312130977|ref|YP_003998317.1| rnase hii [Leadbetterella byssophila DSM 17132]
 gi|311907523|gb|ADQ17964.1| RNase HII [Leadbetterella byssophila DSM 17132]
          Length = 192

 Score =  244 bits (623), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 76/177 (42%), Positives = 112/177 (63%), Gaps = 1/177 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG LAGPVV AA+IL P      +NDSK++S + R +L  +I + A+  ++  
Sbjct: 13  AGVDEAGRGCLAGPVVAAAVILPPGYENEWLNDSKQLSKEDRNQLRTEIENIAVAFAVGQ 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           ASH+ IDK NI +A+  A++ A+E L   P   LIDG             ++KGD+  ++
Sbjct: 73  ASHEEIDKINILQASFLAMHRAIEQLSTRPDHLLIDGNRFSPYPLIPHTCIVKGDAKFMN 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           IAAASI+AK  RD +M I  ++YP Y ++++ GYPT  H++ I+E G +  HR+TFR
Sbjct: 133 IAAASILAKTYRDEIMEILSQEYPQYKWEANAGYPTIFHRKAIQEHGFTPYHRMTFR 189


>gi|167463784|ref|ZP_02328873.1| Ribonuclease H [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322382568|ref|ZP_08056448.1| ribonuclease HII-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153484|gb|EFX45889.1| ribonuclease HII-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 227

 Score =  244 bits (623), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 88/197 (44%), Positives = 115/197 (58%), Gaps = 5/197 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            + E  +       +AGIDEVGRG L G VV AA+IL  ++    INDSKK++ KKRE L
Sbjct: 27  LQKEKELWAAGYTAIAGIDEVGRGCLFGDVVAAAVILPADSYIEEINDSKKLTEKKREAL 86

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +E I + A+ + I     Q I++ NI +A   A+  AVE L + P   LID   +  DL 
Sbjct: 87  FETIMNEAVAVGIGRVDVQTIERINIKQAARLAMKLAVEELALAPDYLLIDAEKV--DLS 144

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               AVI GD +S SIAAASI+AKVTRDRL       YP YG   H GY T +H++ I+ 
Sbjct: 145 FPQEAVIHGDELSQSIAAASIVAKVTRDRLCAEWDGLYPGYGIAGHKGYATKEHREQIRL 204

Query: 191 KGPSCIHRLTFRPLRNL 207
            GP+ +HR  F  LRN+
Sbjct: 205 LGPTPLHRSLF--LRNI 219


>gi|288928610|ref|ZP_06422456.1| ribonuclease HII [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329594|gb|EFC68179.1| ribonuclease HII [Prevotella sp. oral taxon 317 str. F0108]
          Length = 202

 Score =  244 bits (623), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 68/182 (37%), Positives = 107/182 (58%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSKK++ K+R  L  +I + A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSVFAAAVILPVDYENALLNDSKKLTEKQRYALRTQIETDALAWAVGE 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            +   IDK NI  A++ A++ A++ L++ P++ ++DG             ++KGD+  LS
Sbjct: 73  VTADEIDKINILNASILAMHRALDGLKLRPQAVIVDGNRFKPYGTLPHETIVKGDAKFLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           IAAAS++AK  RD  M     ++P Y +D + GYPT  H+  I+E G S  HR TF+ ++
Sbjct: 133 IAAASVLAKTYRDDYMNSLALQHPAYQWDVNKGYPTKAHRAAIEEHGISPFHRKTFKGVK 192

Query: 206 NL 207
            +
Sbjct: 193 EM 194


>gi|237716674|ref|ZP_04547155.1| ribonuclease HII [Bacteroides sp. D1]
 gi|262405448|ref|ZP_06081998.1| ribonuclease HII [Bacteroides sp. 2_1_22]
 gi|294646229|ref|ZP_06723883.1| ribonuclease HII [Bacteroides ovatus SD CC 2a]
 gi|294809104|ref|ZP_06767822.1| ribonuclease HII [Bacteroides xylanisolvens SD CC 1b]
 gi|229442657|gb|EEO48448.1| ribonuclease HII [Bacteroides sp. D1]
 gi|262356323|gb|EEZ05413.1| ribonuclease HII [Bacteroides sp. 2_1_22]
 gi|292638447|gb|EFF56811.1| ribonuclease HII [Bacteroides ovatus SD CC 2a]
 gi|294443658|gb|EFG12407.1| ribonuclease HII [Bacteroides xylanisolvens SD CC 1b]
          Length = 200

 Score =  244 bits (623), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 76/179 (42%), Positives = 103/179 (57%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL        +NDSK++S K+R  L E I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKGFKNELLNDSKQLSEKQRYALREVIEKEAIAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
              + ID+ NI +A+  A++ AV+ L   P+  LIDG    +        V+KGD   LS
Sbjct: 73  VLPEEIDEINILRASFLAMHRAVDQLTTRPQHLLIDGNRFTKYPGIPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H+++P Y +D + GYPT KH+  I E+G +  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTFNLL 191


>gi|91775869|ref|YP_545625.1| RNase HII [Methylobacillus flagellatus KT]
 gi|123078856|sp|Q1H153|RNH2_METFK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|91709856|gb|ABE49784.1| RNase HII [Methylobacillus flagellatus KT]
          Length = 193

 Score =  244 bits (623), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 78/184 (42%), Positives = 112/184 (60%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            + G+DE GRG LAG V  AA+ILDP +   G+ DSK +S KKR+ L  +I   A+  +I
Sbjct: 7   LICGVDEAGRGPLAGAVYAAAVILDPQHPIPGLADSKTLSEKKRDMLAIEIKQHALAWTI 66

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +S S + ID+ NI +A+L A+  A++ L ++P   L+DG   P  +   A  ++KGDS  
Sbjct: 67  ASCSAEEIDEINILQASLLAMKRAIDQLTIMPTQVLVDGLHCP-GIAIPAQGIVKGDSKV 125

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             IAAASI+AK  RD  M   H +YP Y F  H GYPTA H +++ E G   IHR ++ P
Sbjct: 126 QEIAAASILAKTARDHEMVEMHARYPQYDFAKHKGYPTAHHLRLLAEHGACEIHRRSYAP 185

Query: 204 LRNL 207
           ++ +
Sbjct: 186 VKKV 189


>gi|147669350|ref|YP_001214168.1| ribonuclease H [Dehalococcoides sp. BAV1]
 gi|289432616|ref|YP_003462489.1| ribonuclease H [Dehalococcoides sp. GT]
 gi|189043591|sp|A5FR86|RNH2_DEHSB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|146270298|gb|ABQ17290.1| Ribonuclease H [Dehalococcoides sp. BAV1]
 gi|288946336|gb|ADC74033.1| Ribonuclease H [Dehalococcoides sp. GT]
          Length = 212

 Score =  244 bits (623), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 83/202 (41%), Positives = 115/202 (56%), Gaps = 5/202 (2%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHK 66
           P    E ++R++    +AG+DE GRG LAGPVV  A+I+ P    +    + DSK +S  
Sbjct: 8   PSRAEEKLLRKQGFILIAGLDEAGRGCLAGPVVAGAVIMPPRLKGDWVEMVRDSKVLSPA 67

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           KRE LY  I S A+   + +  ++ ID   I  AT  A+  AVE+L   P   L+D   +
Sbjct: 68  KREYLYCHIVSMAVTFGVGAVDNEQIDSMGIAPATRLAMKQAVEDLTCQPDFLLVDYLKL 127

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P D+P     ++ GD++  SIA ASI+AKV+RDRLM     +YP Y    H GY TA H 
Sbjct: 128 P-DIPLPQKGIVDGDALCFSIACASIVAKVSRDRLMSKLDMEYPGYYLAKHKGYGTALHV 186

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
           + I +KG S IHR TF PL+ +
Sbjct: 187 ECICQKGISPIHRRTFAPLKGM 208


>gi|332188926|ref|ZP_08390627.1| ribonuclease HII family protein [Sphingomonas sp. S17]
 gi|332011037|gb|EGI53141.1| ribonuclease HII family protein [Sphingomonas sp. S17]
          Length = 198

 Score =  244 bits (623), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 79/185 (42%), Positives = 114/185 (61%), Gaps = 5/185 (2%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
            P+ G+DE GRG LAGPVV AA+IL   + P GINDSKK++ K R  L  +I S AI+ +
Sbjct: 8   MPLCGVDEAGRGPLAGPVVAAAVILPERDCPSGINDSKKLTEKTRARLCAEIRSCAIVGV 67

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVE----NLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
                + ID+ NI+ AT+ A+  AV+     L   P   L+DG  +P+     A A++ G
Sbjct: 68  GVVEPEEIDRLNIYWATMKAMTLAVDAVVAGLGRAPAHVLVDGNRLPK-WGYTATAIVGG 126

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D+ SL+I AASI+AK  RD +M  A + +P YG+ S+ GY +A H   ++E GP+ +HR 
Sbjct: 127 DAKSLAIGAASIVAKHVRDEMMIAAAEDWPAYGWHSNKGYGSATHLAALREHGPTPLHRR 186

Query: 200 TFRPL 204
           +F P+
Sbjct: 187 SFAPV 191


>gi|89365772|dbj|BAE86854.1| RNase HII [Shewanella sp. SIB1]
          Length = 212

 Score =  244 bits (623), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 86/182 (47%), Positives = 116/182 (63%), Gaps = 2/182 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S K+R  LY++I  +A+ +S
Sbjct: 22  GLVAGVDEVGRGPLIGDVVTAAVILDPNKPIVGLNDSKKLSEKRRNALYQQIMDNALSVS 81

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  AS   ID+ NI  AT+ A+  AV  L ++P   L+DG  +P D    + A+IKGD +
Sbjct: 82  VGRASPAEIDELNILHATMLAMQRAVAGLSILPERVLVDGNRVP-DFGIASHAIIKGDGL 140

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +I+AASIIAKVTRD  M +   +YP YGF  H GYPT  H + +   G    HR +F+
Sbjct: 141 VAAISAASIIAKVTRDAEMDMLDSQYPQYGFAKHKGYPTKAHFEALALYGVLPEHRKSFK 200

Query: 203 PL 204
           P+
Sbjct: 201 PV 202


>gi|218782471|ref|YP_002433789.1| ribonuclease H [Desulfatibacillum alkenivorans AK-01]
 gi|218763855|gb|ACL06321.1| Ribonuclease H [Desulfatibacillum alkenivorans AK-01]
          Length = 224

 Score =  244 bits (623), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 87/206 (42%), Positives = 120/206 (58%), Gaps = 5/206 (2%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           +      + P +  E    +K    +AG+DE GRG LAGPVV AA++L  N    G++DS
Sbjct: 14  LLDRDAMKDP-WSFENEAHKKGYTRIAGVDEAGRGPLAGPVVSAAVVLPGNADLPGVDDS 72

Query: 61  KKISHKKREELYEKITSSAIISISSA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           KK++ KKR+ L+E I   AI           ID+ NI +A+L ++  +VENL+  P   L
Sbjct: 73  KKLTPKKRDALFESIYEQAIGIGIGIIDPVEIDRINILQASLLSMLVSVENLEPAPDYLL 132

Query: 120 IDG-RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
           IDG   I   LP     +  GDS+S+SIAAASI+AKVTRDRLM    +++P +GF  H G
Sbjct: 133 IDGPFGIKSFLP--QTPIKHGDSLSISIAAASIVAKVTRDRLMERYDQEFPAFGFAKHKG 190

Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPL 204
           Y T  H++ I   GP  IHR +FR +
Sbjct: 191 YGTKAHREAISLNGPCSIHRFSFRGV 216


>gi|126728136|ref|ZP_01743952.1| ribonuclease HII [Sagittula stellata E-37]
 gi|126711101|gb|EBA10151.1| ribonuclease HII [Sagittula stellata E-37]
          Length = 219

 Score =  244 bits (623), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 86/195 (44%), Positives = 127/195 (65%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  +  + +  VAG+DEVGRG LAGPVV AA++L+  +IP G+NDSKK++ K+RE L 
Sbjct: 24  RFEEALWAQGVNRVAGVDEVGRGPLAGPVVAAAVVLNRASIPDGLNDSKKLTIKRREFLA 83

Query: 73  EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
             +  SA +SI  AS + ID+ NI +A+L A+  AVE L   P   L+DG   P  + C 
Sbjct: 84  PLLWQSAEVSIGQASVEEIDETNILQASLLAMRRAVEGLPKPPDHLLVDGNRAPGGISCD 143

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
           A  ++ GD  S SIAAASI+AK+ RD +M+ A  +YP YG++++ GYPT  H+  ++  G
Sbjct: 144 ATCIVGGDGRSPSIAAASIVAKIWRDDVMKRAATQYPGYGWETNAGYPTKCHKSALRNLG 203

Query: 193 PSCIHRLTFRPLRNL 207
            +  HR +F+P+R++
Sbjct: 204 ATPFHRRSFKPVRDI 218


>gi|295100799|emb|CBK98344.1| RNase HII [Faecalibacterium prausnitzii L2-6]
          Length = 214

 Score =  244 bits (623), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 85/191 (44%), Positives = 112/191 (58%), Gaps = 2/191 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +  +A +R +     AG+DE GRG L GPV VAA ILDP    +GINDSKK+S KKRE L
Sbjct: 14  YAYDADIRAQ-YGCFAGVDEAGRGPLCGPVCVAACILDPEAPVYGINDSKKLSEKKREAL 72

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +++I   A+   I       ID+ NI  AT+  +  AVE L ++P   L+DG  IP  L 
Sbjct: 73  FDQIVEKALAYRIVFVGPDIIDRDNILNATMGGMRQAVEGLDIVPNLVLVDGNRIPAGLT 132

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             A  V+KGD+ S SI AASI+AKV+RDR M    K+YP Y    H GY T  H ++I +
Sbjct: 133 MPAQPVVKGDATSASIGAASILAKVSRDRYMLELDKQYPQYQLAKHKGYGTKLHYELIAQ 192

Query: 191 KGPSCIHRLTF 201
            G    +R +F
Sbjct: 193 YGIQPFYRRSF 203


>gi|309379099|emb|CBX22230.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 194

 Score =  244 bits (623), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 79/182 (43%), Positives = 106/182 (58%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86
           AG+DE GRG L G V  AA+IL       G+ DSKK+S KKR+ L + I + A     +A
Sbjct: 6   AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAKIIKNQAAAWHVAA 65

Query: 87  S-HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           +  + I   NI  AT+ A+  A++ L V P    IDG  IPE L   A AV+KGDS  + 
Sbjct: 66  AGPEEIASLNILHATMLAMKRAIDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P+R
Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185

Query: 206 NL 207
           NL
Sbjct: 186 NL 187


>gi|223938652|ref|ZP_03630542.1| Ribonuclease H [bacterium Ellin514]
 gi|223892640|gb|EEF59111.1| Ribonuclease H [bacterium Ellin514]
          Length = 245

 Score =  244 bits (623), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 81/204 (39%), Positives = 115/204 (56%), Gaps = 10/204 (4%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-------NDSKKI 63
               E  + ++    VAG+DE G G LAGPVV AA++   + +  G+       NDSK++
Sbjct: 10  RLGFERELWQQGTTLVAGVDEAGCGPLAGPVVAAAVLFPCSWLEAGLFSKLRGLNDSKQL 69

Query: 64  SHKKREELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
              +RE+ Y  I +   I  +I+    + ID+ NI +A    +  A++ L   P+  L+D
Sbjct: 70  DEDQREKFYNIIVNHPEIRHAIAVIDVEMIDRINIRQAAWRGMNQALDQLNPKPQHVLVD 129

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           G  I + LP    A+++GD  S SIAAAS++AKVTRDRLM+   K+YP YGF  H GY T
Sbjct: 130 GLKI-KWLPYAQTALVQGDGKSYSIAAASVLAKVTRDRLMQDYDKQYPGYGFAEHKGYGT 188

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLR 205
            KH   I  +GP  IHR +F P R
Sbjct: 189 PKHLAAINAQGPCLIHRKSFAPFR 212


>gi|220906598|ref|YP_002481909.1| ribonuclease HII [Cyanothece sp. PCC 7425]
 gi|219863209|gb|ACL43548.1| Ribonuclease H [Cyanothece sp. PCC 7425]
          Length = 206

 Score =  244 bits (623), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 77/202 (38%), Positives = 121/202 (59%), Gaps = 3/202 (1%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKIS 64
           + + P  ++E    ++    + GIDEVGRG L+GPVV AA++L        G+ DSK +S
Sbjct: 1   MVQIPDLQVEQTFWQRGQLRLVGIDEVGRGCLSGPVVAAAVLLPAYCEPIPGVRDSKTLS 60

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            ++R+ L +KI   AI + I +AS   I++ NI +AT  A+  A++ +       LIDGR
Sbjct: 61  AQRRQVLDQKIRQQAIAVGIGAASVAEINQVNILQATYLAMQRALQRIGG-YDHLLIDGR 119

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +P   P    A+++GD+ S +IA ASI+AKV RDR M+   ++YP YG++ +VGY T +
Sbjct: 120 PVPVFEPEHHTAIVEGDASSYAIACASIVAKVRRDRFMQHLARRYPGYGWEQNVGYGTKQ 179

Query: 184 HQQVIKEKGPSCIHRLTFRPLR 205
           H   I   G +  HR +F+P++
Sbjct: 180 HLAAITSLGVTPHHRRSFKPVQ 201


>gi|332527884|ref|ZP_08403921.1| ribonuclease HII [Rubrivivax benzoatilyticus JA2]
 gi|332112461|gb|EGJ12254.1| ribonuclease HII [Rubrivivax benzoatilyticus JA2]
          Length = 214

 Score =  244 bits (623), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 87/205 (42%), Positives = 122/205 (59%), Gaps = 8/205 (3%)

Query: 2   FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61
           F  + PE+                VAG+DE G G LAGPVV AA+ILD      G+ DSK
Sbjct: 6   FSKAAPEQLDLGW------HPPGLVAGVDEAGCGPLAGPVVAAAVILDDQAPIAGLADSK 59

Query: 62  KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
            +S ++RE L+++I + A+ +SI+ AS + ID  NI  A L A+  AVE L+++P+  ++
Sbjct: 60  ALSARQRERLFDEIHARALCVSIALASVEEIDTLNILHARLLAMKRAVETLRLLPKRVMV 119

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG  +P  L   A AV+ GD+   +I+AASI+AKV RDRL    H ++PDYGFD H GYP
Sbjct: 120 DGNRLPV-LRFPAEAVVGGDAKVPAISAASIVAKVHRDRLCAELHARWPDYGFDGHKGYP 178

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLR 205
           T  H   ++  G    HR +F P+R
Sbjct: 179 TRVHLDALRRLGACPEHRRSFAPVR 203


>gi|297538517|ref|YP_003674286.1| Ribonuclease H [Methylotenera sp. 301]
 gi|297257864|gb|ADI29709.1| Ribonuclease H [Methylotenera sp. 301]
          Length = 194

 Score =  243 bits (622), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 83/189 (43%), Positives = 116/189 (61%), Gaps = 6/189 (3%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            + G DE GRG LAG V  AA+IL+P+    G+ DSKK+S KKR+ L  +I   A+  +I
Sbjct: 6   LICGADEAGRGPLAGAVYAAAVILNPDRPIIGLADSKKLSEKKRDLLSVEIKQYALAWAI 65

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVI----PRSALIDGRSIPEDLPCQAFAVIKG 139
           +S S Q ID+ NI +A+L A+  A+E +QV     P    +DG   P+ +     A++KG
Sbjct: 66  ASCSAQEIDEINILQASLLAMKRAIEAMQVQFGITPDLVQVDGNKCPK-ISLPCEAIVKG 124

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DS   +I+AASI+AKV RD  +    K YP YGF  H GYPTA H Q++   G + +HRL
Sbjct: 125 DSKVQAISAASILAKVARDAELYELDKIYPQYGFAKHKGYPTAFHLQMLDAHGVTPVHRL 184

Query: 200 TFRPLRNLS 208
           ++ P+R LS
Sbjct: 185 SYAPVRRLS 193


>gi|284032640|ref|YP_003382571.1| Ribonuclease H [Kribbella flavida DSM 17836]
 gi|283811933|gb|ADB33772.1| Ribonuclease H [Kribbella flavida DSM 17836]
          Length = 232

 Score =  243 bits (622), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 76/198 (38%), Positives = 107/198 (54%), Gaps = 4/198 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKRE 69
           +  E  +R   + P+AG+DE GRG  AGP+V AA+IL          + DSK ++ K RE
Sbjct: 17  YGYERALRRVGLDPIAGVDEAGRGPCAGPLVAAAVILPDGKRGQIPELADSKLLTAKARE 76

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
             Y++I   A+  S+ S      D+  +H A + A+  A+  L V P+  L DG  + + 
Sbjct: 77  RCYDEIRKRALAWSVVSIEADECDRLGMHVANVQALRRALFRLDVRPQYVLTDGFGV-DG 135

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L     A+ KGD ++  IAAAS++AKVTRDR+M      YP YGF  H GY T +HQ  +
Sbjct: 136 LGVPGLAIWKGDRVAACIAAASVVAKVTRDRIMEHWDTVYPQYGFAIHKGYCTPEHQAAL 195

Query: 189 KEKGPSCIHRLTFRPLRN 206
            E GP   HR  F  +R 
Sbjct: 196 DEYGPCPQHRRRFENVRR 213


>gi|114797072|ref|YP_761434.1| ribonuclease HII [Hyphomonas neptunium ATCC 15444]
 gi|123128500|sp|Q0BYK9|RNH2_HYPNA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|114737246|gb|ABI75371.1| ribonuclease HIII [Hyphomonas neptunium ATCC 15444]
          Length = 207

 Score =  243 bits (622), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 81/198 (40%), Positives = 105/198 (53%), Gaps = 15/198 (7%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            + G+DE GRG  AGPV  AA+ILDP     G+ DSKK+S K R+ L   I   A+   +
Sbjct: 6   LIIGVDEAGRGPWAGPVTAAAVILDPAQPIEGLTDSKKLSEKARDRLAPLIRERALAWCV 65

Query: 84  SSASHQYIDKHNIHKATLDAIYHAV--------------ENLQVIPRSALIDGRSIPEDL 129
           + AS + ID  NI +AT  A+  A+              E +       LIDG ++P DL
Sbjct: 66  AEASVEEIDTLNIRQATFLAMRRAILGQSRTDQDRSGQFETVSATAGLILIDGNALPGDL 125

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P  A A+IKGD    +I+AASI+AK  RD  M      YP YGF  H GY TA H   + 
Sbjct: 126 PAPARAIIKGDLTEPAISAASILAKTHRDAQMASLCNLYPGYGFSGHKGYGTAAHAAALT 185

Query: 190 EKGPSCIHRLTFRPLRNL 207
             GP  +HR +F P+R L
Sbjct: 186 RLGPCPVHRQSFAPVRAL 203


>gi|315924213|ref|ZP_07920439.1| ribonuclease HII [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622615|gb|EFV02570.1| ribonuclease HII [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 262

 Score =  243 bits (622), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 86/192 (44%), Positives = 115/192 (59%), Gaps = 3/192 (1%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           H  +E   R +    ++GIDEVGRG LAGPVV AA+IL   +   GI+DSKKIS K+RE 
Sbjct: 66  HQAIERAARAQGYALISGIDEVGRGPLAGPVVAAAVILPETSAIAGIDDSKKISAKRRET 125

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L   I   A+ I I     + ID  NI +AT  A+ +AV  L   P   LID   +P  +
Sbjct: 126 LNAAIRDEALAIGIGVVDPETIDAMNILEATKLAMTNAVAQLVPRPDLLLIDALKLPSQI 185

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P Q  AV+ GD+    I AASI+AKV RD LM+   + YP+YGF+ ++GY TA H + I+
Sbjct: 186 PVQ--AVVHGDARCYCIGAASIVAKVYRDHLMQEYARTYPEYGFERNMGYGTAAHIEAIQ 243

Query: 190 EKGPSCIHRLTF 201
             GP+ +HR +F
Sbjct: 244 TCGPTPVHRRSF 255


>gi|222100634|ref|YP_002535202.1| Ribonuclease [Thermotoga neapolitana DSM 4359]
 gi|221573024|gb|ACM23836.1| Ribonuclease [Thermotoga neapolitana DSM 4359]
          Length = 245

 Score =  243 bits (622), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 85/192 (44%), Positives = 112/192 (58%), Gaps = 5/192 (2%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77
              K    VAGIDE GRG LAGPVV AA+IL+ +     + DSK ++ K RE+L+++I  
Sbjct: 7   FYRKEYGVVAGIDEAGRGCLAGPVVAAAVILEYD--IEEVCDSKLLTSKTREKLFDEIME 64

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137
            A + I  A+ + ID  NI  AT  A+  A+ENL V P   +IDG+ +  DL      ++
Sbjct: 65  KAAVGIGMATPEEIDLQNIFNATKMAMNRALENLPVKPSFVIIDGKGL--DLGVPGTCLV 122

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
            GD  S  I AASIIAKV RDRLM   H  YP++ F  H GY T  H   I+  G   +H
Sbjct: 123 GGDRKSKLIGAASIIAKVVRDRLMEKLHDLYPEFSFHKHKGYATKDHLNEIRLHGVLPVH 182

Query: 198 RLTFRPL-RNLS 208
           R++FRP+  NLS
Sbjct: 183 RMSFRPVLENLS 194


>gi|281422598|ref|ZP_06253597.1| ribonuclease HII [Prevotella copri DSM 18205]
 gi|281403268|gb|EFB33948.1| ribonuclease HII [Prevotella copri DSM 18205]
          Length = 215

 Score =  243 bits (622), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 70/179 (39%), Positives = 105/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL P      +NDSKK++ KKR+ L E+I   A+  ++  
Sbjct: 26  AGCDEAGRGCLAGSVYAAAVILPPGYQNAELNDSKKLTDKKRKALREQIERDAVAWAVGI 85

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + IDK NI  A+  A++ A++ L+V P + ++DG             ++KGD   ++
Sbjct: 86  VTPEEIDKINILNASFLAMHRALDQLKVRPEAVIVDGNRFKPYKDLPYTTIVKGDGKYMA 145

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M    ++YP Y +  + GYPT KH+  I+E G +  HR+++  L
Sbjct: 146 IAAASILAKTYRDDYMDALAEEYPQYDWKGNKGYPTKKHRAAIREFGVTPYHRMSYNLL 204


>gi|78044826|ref|YP_360258.1| ribonuclease HII [Carboxydothermus hydrogenoformans Z-2901]
 gi|97182364|sp|Q3AC76|RNH2_CARHZ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|77996941|gb|ABB15840.1| ribonuclease HII [Carboxydothermus hydrogenoformans Z-2901]
          Length = 231

 Score =  243 bits (622), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 73/207 (35%), Positives = 123/207 (59%), Gaps = 4/207 (1%)

Query: 2   FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61
             N++P   + ++E  +       VAG DE GRG +AGPVV A +++ P      ++DSK
Sbjct: 18  LDNNLPF--NLQIENQLFSSGYELVAGGDEAGRGPVAGPVVAAIVVIKPGIYIPEVDDSK 75

Query: 62  KISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K+S KKRE+L+E+I +     S++      ID+ NI++AT  A   A+++L + P + ++
Sbjct: 76  KLSSKKREKLFEEIINLVTDWSVAVVGPDLIDRLNIYQATKFAFKAALDSLSIKPEALIL 135

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           D   +      +  +++K D IS ++A ASI+AKV RD++M    K +P YGF  + GY 
Sbjct: 136 DALKL-TGFSGKQVSMVKADEISFAVACASILAKVIRDKIMEQYDKDFPGYGFKKNKGYL 194

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           T +H++ ++  GPS IHR +F P+++ 
Sbjct: 195 TREHREALELLGPSPIHRKSFEPIKSF 221


>gi|242373537|ref|ZP_04819111.1| ribonuclease HII [Staphylococcus epidermidis M23864:W1]
 gi|242348900|gb|EES40502.1| ribonuclease HII [Staphylococcus epidermidis M23864:W1]
          Length = 256

 Score =  243 bits (622), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 77/191 (40%), Positives = 114/191 (59%), Gaps = 3/191 (1%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77
           +   +   + GIDEVGRG LAGPVV  A+IL+ ++   G+NDSKK+  K+R  L   + +
Sbjct: 66  LNHDSNALICGIDEVGRGPLAGPVVACAVILNKDHHYLGLNDSKKVPAKQRVALNNDLKA 125

Query: 78  SAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136
             +  +   AS + ID+ NI++AT  A+  A+  L   P   LID   +  D+P    ++
Sbjct: 126 GVLSYAYGIASSEEIDELNIYRATQVAMQRAIAQLDEQPTHLLIDAMKLDNDIP--QTSI 183

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           IKGD+ S+SIAAASI+AK  RD  M+     +PDYGF+ +VGY T +H + I   G    
Sbjct: 184 IKGDAKSVSIAAASIMAKEYRDDYMKALANHFPDYGFEKNVGYGTKQHLEAIDTYGVINE 243

Query: 197 HRLTFRPLRNL 207
           HR +F P+++L
Sbjct: 244 HRKSFEPIKSL 254


>gi|90961695|ref|YP_535611.1| ribonuclease HII [Lactobacillus salivarius UCC118]
 gi|122449076|sp|Q1WU07|RNH2_LACS1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|90820889|gb|ABD99528.1| Ribonuclease HII [Lactobacillus salivarius UCC118]
 gi|300214494|gb|ADJ78910.1| Ribonuclease HII (RNase HII) [Lactobacillus salivarius CECT 5713]
          Length = 255

 Score =  243 bits (622), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 86/208 (41%), Positives = 135/208 (64%), Gaps = 3/208 (1%)

Query: 3   CNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62
              +  +   ++E  + +K +  +AG+DEVGRG LAGPVV AA+IL  +   F +NDSK+
Sbjct: 49  NEKLEFQNRLKIERDLWDKGIEYIAGVDEVGRGPLAGPVVTAAVILPHDFDVFEVNDSKQ 108

Query: 63  ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           +S KKREELY+KI   A+ +S+  + +  ID+ NI++AT  A+  A+E+L + P+  ++D
Sbjct: 109 LSEKKREELYKKILEKAVAVSVGLSDNNLIDEVNIYEATRLAMKQAIESLNITPQKIIVD 168

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
             +I  D       +IKGD+ S S+AAASI+AKVTRD LM+   + YP YGF+ + GY T
Sbjct: 169 AMTI--DTKIPQLRLIKGDAKSASVAAASIVAKVTRDHLMQFYARIYPGYGFEKNDGYGT 226

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNLSV 209
            +H + ++ KG + IHR +F P++ + +
Sbjct: 227 KQHLEGLENKGVTPIHRQSFEPVKKILL 254


>gi|319900379|ref|YP_004160107.1| RNase HII [Bacteroides helcogenes P 36-108]
 gi|319415410|gb|ADV42521.1| RNase HII [Bacteroides helcogenes P 36-108]
          Length = 201

 Score =  243 bits (622), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 73/179 (40%), Positives = 104/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++ K+R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYLLREVIEKEALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + ID+ NI  A+  A++ A++ L V P+  LIDG    +        ++KGD   LS
Sbjct: 73  VSPEEIDRINILNASFLAMHRAIDGLSVHPQHLLIDGNRFKKYRDLPHTTIVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H++YP Y ++ + GYPT KH+  I  +G +  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNGLHEEYPYYDWNHNKGYPTKKHRAAIAVRGTTPYHRMTFNLL 191


>gi|73541556|ref|YP_296076.1| ribonuclease HII [Ralstonia eutropha JMP134]
 gi|97189223|sp|Q470F1|RNH2_RALEJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|72118969|gb|AAZ61232.1| RNase HII [Ralstonia eutropha JMP134]
          Length = 218

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 79/188 (42%), Positives = 113/188 (60%), Gaps = 6/188 (3%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-I 81
             + G+DE GRG LAGPV  AA++ DP      G+ DSK ++  KRE LY+KI   A+  
Sbjct: 23  RFLCGVDEAGRGPLAGPVYAAAVVFDPAKPMLRGLADSKVLTASKREALYDKICERALGW 82

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLPCQAFAVIK 138
            I+ A+ + ID  NI  A++ A+  AV+ L    V P    +DG   P+ +P    A++K
Sbjct: 83  HIAFATVEEIDTLNILHASMLAMQRAVQGLAEKGVTPDLVQVDGNRCPQ-VPFPVEAIVK 141

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GDS+  +I+AASI+AKV RDR +   H+ YP YGFD+H GYPT +H   + + G +  HR
Sbjct: 142 GDSLVKAISAASILAKVARDRELLTLHEVYPQYGFDAHSGYPTPQHLAALAQFGATPHHR 201

Query: 199 LTFRPLRN 206
            +F P+R 
Sbjct: 202 RSFAPVRE 209


>gi|307565732|ref|ZP_07628201.1| ribonuclease HII [Prevotella amnii CRIS 21A-A]
 gi|307345558|gb|EFN90926.1| ribonuclease HII [Prevotella amnii CRIS 21A-A]
          Length = 200

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 73/179 (40%), Positives = 103/179 (57%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL        +NDSKK+S K R  L + I  +A+  +I  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPKTYCNEHLNDSKKLSSKTRYALRKDIELNAVAWAIGK 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + ID+ NI  A++ A++ A++ L + P + +IDG             +IKGD   LS
Sbjct: 73  VTPEEIDRINILNASILAMHRALDQLIIRPEAIIIDGNRFKPYHNIPYTTIIKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M    KKYP Y ++ ++GYPT  H+Q I + G +  HR +F+ L
Sbjct: 133 IAAASILAKTYRDDYMCTLAKKYPQYEWEHNMGYPTKAHRQAIAKYGITPYHRKSFKLL 191


>gi|282881109|ref|ZP_06289796.1| ribonuclease HII [Prevotella timonensis CRIS 5C-B1]
 gi|281304913|gb|EFA96986.1| ribonuclease HII [Prevotella timonensis CRIS 5C-B1]
          Length = 200

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 70/181 (38%), Positives = 110/181 (60%), Gaps = 1/181 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG +  AA+IL  +     +NDSK+++ KKR EL E I  +A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSIFAAAVILPSDYDNHVLNDSKQLTRKKRNELREVIMQAAVAWAVGE 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S Q ID+ NI +A+  A++ A++ L+V P++ ++DG             ++KGD+   S
Sbjct: 73  VSPQEIDEINILRASFLAMHRALDQLKVRPQAIIVDGNRFTPYHDIPYTTIVKGDAKYQS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           IAAASI+AK  RD  M    ++YP Y ++S++GYPT +H+  I++ G +  HR ++  L 
Sbjct: 133 IAAASILAKTFRDDYMDRLAEEYPQYHWESNMGYPTREHRAAIQQYGVTPYHRRSYNLLG 192

Query: 206 N 206
           N
Sbjct: 193 N 193


>gi|257869680|ref|ZP_05649333.1| ribonuclease HII [Enterococcus gallinarum EG2]
 gi|257803844|gb|EEV32666.1| ribonuclease HII [Enterococcus gallinarum EG2]
          Length = 257

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 88/194 (45%), Positives = 127/194 (65%), Gaps = 3/194 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  + +K +  VAG+DEVGRG LAGPVV AA++L  N    G+NDSK++S KKREEL+ 
Sbjct: 63  FEQELYQKGLRFVAGLDEVGRGPLAGPVVAAAVVLPKNCGIIGLNDSKQLSAKKREELFI 122

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I + A+ I I  A H+ ID+ NI++A+ +A+  A+ +L + P   L+D  ++  D+P  
Sbjct: 123 EIQNKAVAIGIGIADHEEIDRVNIYQASKNAMKRALADLSITPEHLLVDAMTLDTDIP-- 180

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SIAAASI+AKV RD LM+  H  +P YGFD + GY T  H + +   G
Sbjct: 181 QTSLIKGDARSISIAAASIMAKVFRDNLMKDYHGVFPHYGFDQNAGYGTKTHLEGLAAHG 240

Query: 193 PSCIHRLTFRPLRN 206
              IHR TF P++ 
Sbjct: 241 ICPIHRKTFAPVKQ 254


>gi|319649582|ref|ZP_08003738.1| hypothetical protein HMPREF1013_00342 [Bacillus sp. 2_A_57_CT2]
 gi|317398744|gb|EFV79426.1| hypothetical protein HMPREF1013_00342 [Bacillus sp. 2_A_57_CT2]
          Length = 259

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 88/196 (44%), Positives = 118/196 (60%), Gaps = 3/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E   R +    +AGIDEVGRG LAGPVV AA+IL  +    G++DSKK+   KREE  
Sbjct: 61  QYEVRYRSQGFQFIAGIDEVGRGPLAGPVVAAAVILPEDFFLPGLDDSKKVPESKREEFS 120

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E I + A   S+     + ID+ NI +AT  A+  A+E L   P   L D   +    P 
Sbjct: 121 EIIKAKAAAFSVGIIDPEEIDRINIFEATKKAMLSAIEGLSPKPDFLLADAVKLLTPYPM 180

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +  A+IKGD  S+SIAAASIIAKVTRDR+M    K++P YGF+ ++GY T +H + I   
Sbjct: 181 E--AIIKGDGKSISIAAASIIAKVTRDRMMAEIGKEFPQYGFEKNMGYGTKEHLEAITLH 238

Query: 192 GPSCIHRLTFRPLRNL 207
           G S  HR +F P++NL
Sbjct: 239 GISPYHRKSFAPIKNL 254


>gi|217967913|ref|YP_002353419.1| Ribonuclease H [Dictyoglomus turgidum DSM 6724]
 gi|217337012|gb|ACK42805.1| Ribonuclease H [Dictyoglomus turgidum DSM 6724]
          Length = 203

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 84/193 (43%), Positives = 115/193 (59%), Gaps = 3/193 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E  +       +AG+DE GRGALAGPV   A+IL P +    +NDSK +S K+REEL+
Sbjct: 13  ERERELWYY-FRYIAGVDEAGRGALAGPVYAGAVILPPLSSIP-VNDSKLLSPKEREELF 70

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E I   A+  S   A+ + I++  I KATL A+  A+E L++ P   L+DG     ++  
Sbjct: 71  EIIKKEALCWSFGYATVEEIEELGILKATLLAMRRAIEKLEIKPEYLLVDGNIPIPNMDI 130

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               ++KGD   LSIA+ASI+AKV RDR M+   K+YP YGF  H GY T +H++ IK  
Sbjct: 131 PQETIVKGDRKCLSIASASIVAKVLRDRYMKELDKEYPGYGFSRHKGYATKEHREKIKSL 190

Query: 192 GPSCIHRLTFRPL 204
           G   IHR  F+ L
Sbjct: 191 GSLLIHRKGFKLL 203


>gi|300727476|ref|ZP_07060867.1| ribonuclease HII [Prevotella bryantii B14]
 gi|299775179|gb|EFI71780.1| ribonuclease HII [Prevotella bryantii B14]
          Length = 203

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 77/179 (43%), Positives = 106/179 (59%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK++S KKR  L E+I   A+  +I  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPADYNNPELNDSKQLSLKKRYALREQIQKDAVAWAIGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + IDK NI  A+  A++ A+E LQV P++ +IDG             ++KGDS   S
Sbjct: 73  VTPEEIDKINILHASFLAMHRAIEQLQVKPQALIIDGNHFDPYKDLPYTTIVKGDSKYQS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M+   ++YP Y + S+ GYPT KH+  I+E G S  HR ++  L
Sbjct: 133 IAAASILAKTYRDDYMKALAEEYPYYDWASNKGYPTKKHRLGIREHGVSPYHRKSYNLL 191


>gi|189459842|ref|ZP_03008627.1| hypothetical protein BACCOP_00472 [Bacteroides coprocola DSM 17136]
 gi|189433452|gb|EDV02437.1| hypothetical protein BACCOP_00472 [Bacteroides coprocola DSM 17136]
          Length = 200

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 74/179 (41%), Positives = 102/179 (56%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSKK++  +R  L E I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPSDYENQQLNDSKKLTEHQRYALREVIERDAIAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + Q IDK NI  A+  A++ A++ L+V P+  LIDG    +        V+KGD   LS
Sbjct: 73  VTPQEIDKINILNASFLAMHRAIDQLKVRPQHLLIDGNRFNKYEDLPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M    ++YP Y +  + GYPT KH++ I   G +  HR+T+  L
Sbjct: 133 IAAASILAKTYRDDYMNRLAEEYPLYDWQKNKGYPTKKHREAIARYGTTPYHRMTYNLL 191


>gi|17546137|ref|NP_519539.1| ribonuclease HII [Ralstonia solanacearum GMI1000]
 gi|39932439|sp|Q8XZH7|RNH2_RALSO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|17428433|emb|CAD15120.1| probable ribonuclease hII (rnase hII) protein [Ralstonia
           solanacearum GMI1000]
          Length = 236

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 76/194 (39%), Positives = 116/194 (59%), Gaps = 5/194 (2%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76
              ++    + G+DE GRG LAGPV  AA++L+P     G+ DSK ++ KKRE LY++I 
Sbjct: 20  AAGKRARRILCGVDEAGRGPLAGPVTAAAVVLNPRKPIQGLADSKVLTAKKREALYDEIV 79

Query: 77  SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLPCQ 132
             A+   ++ A+ + ID+ NI  AT+ A+  AV+ +    V+P    +DG   P+ +   
Sbjct: 80  EKALAWHVAEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVDGNRCPQ-VAFA 138

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             A++KGD++  +I+AASI+AKVTRDR +   H  +P YGFD H GY T +H   I+  G
Sbjct: 139 VEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPQYGFDVHAGYGTPQHLAAIERHG 198

Query: 193 PSCIHRLTFRPLRN 206
            +  HR +F P+R 
Sbjct: 199 VTPHHRRSFAPVRR 212


>gi|229174503|ref|ZP_04302035.1| Ribonuclease [Bacillus cereus MM3]
 gi|228609063|gb|EEK66353.1| Ribonuclease [Bacillus cereus MM3]
          Length = 257

 Score =  243 bits (620), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 94/194 (48%), Positives = 126/194 (64%), Gaps = 3/194 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  +REK +  +AGIDEVGRG LAGPVV AA++L  N    G+NDSKK+S  KRE  Y+
Sbjct: 62  YEIALREKGLTLIAGIDEVGRGPLAGPVVTAAVVLPENFYIPGLNDSKKLSEAKRERFYD 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I + AI I +   S Q ID+ NI++AT  A+  AV NL   P   LID   +P   P  
Sbjct: 122 EIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCAPEHLLIDAMKLPT--PIP 179

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T +H   I+  G
Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLGAIEAHG 239

Query: 193 PSCIHRLTFRPLRN 206
               HR +F P+++
Sbjct: 240 VLEEHRKSFAPIKD 253


>gi|319762189|ref|YP_004126126.1| ribonuclease h [Alicycliphilus denitrificans BC]
 gi|330825999|ref|YP_004389302.1| ribonuclease H [Alicycliphilus denitrificans K601]
 gi|317116750|gb|ADU99238.1| Ribonuclease H [Alicycliphilus denitrificans BC]
 gi|329311371|gb|AEB85786.1| Ribonuclease H [Alicycliphilus denitrificans K601]
          Length = 206

 Score =  243 bits (620), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 89/210 (42%), Positives = 128/210 (60%), Gaps = 9/210 (4%)

Query: 2   FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61
              S+PE+  F+            VAG+DE GRG LAGPVV AA+ILD      G+ DSK
Sbjct: 3   LPRSLPEQASFDW------HPGGLVAGVDEAGRGPLAGPVVAAAVILDDQQPIVGLADSK 56

Query: 62  KISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
            ++  +RE L+++I + A+  S++ AS + ID+ NI +ATL A+  AV+ L++ P  AL+
Sbjct: 57  ALTAARRERLFDEIRAKALCCSVAEASVEEIDRLNILQATLLAMRRAVQGLRLKPTLALV 116

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG  +P  L   A A++KGD+   +I+AASI+AKVTRDR     H +YP YGF  H GY 
Sbjct: 117 DGNRLPR-LDMPAEAIVKGDARVAAISAASILAKVTRDRWCAELHAQYPQYGFAGHKGYG 175

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPL-RNLSV 209
           TA+H   ++  G    HR +F P+ R L++
Sbjct: 176 TAEHLAALQAHGACPQHRRSFAPVARALAL 205


>gi|257867805|ref|ZP_05647458.1| ribonuclease HII [Enterococcus casseliflavus EC30]
 gi|257874132|ref|ZP_05653785.1| ribonuclease HII [Enterococcus casseliflavus EC10]
 gi|257876697|ref|ZP_05656350.1| ribonuclease HII [Enterococcus casseliflavus EC20]
 gi|257801888|gb|EEV30791.1| ribonuclease HII [Enterococcus casseliflavus EC30]
 gi|257808296|gb|EEV37118.1| ribonuclease HII [Enterococcus casseliflavus EC10]
 gi|257810863|gb|EEV39683.1| ribonuclease HII [Enterococcus casseliflavus EC20]
          Length = 254

 Score =  243 bits (620), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 89/195 (45%), Positives = 124/195 (63%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E    ++    +AG+DEVGRG LAGPVV AA+IL       G+NDSK++S KKREEL+
Sbjct: 60  RFENEAFQQGARFIAGLDEVGRGPLAGPVVSAAVILPKECQILGLNDSKQLSAKKREELF 119

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I + A+ + I   S + ID+ NI++A+  A+  A+ +L V P   LID  +I  ++P 
Sbjct: 120 IEIQNKAVAVGIGVVSPEEIDRINIYQASRLAMKEALIDLAVKPEYLLIDAMTIDTEIPQ 179

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           Q+  +IKGD+ S+SIAAASIIAKV RD LM+  H+ YP YGFD + GY T  H + +   
Sbjct: 180 QS--LIKGDARSISIAAASIIAKVYRDNLMKDFHEVYPFYGFDQNAGYGTKVHLEGLAAH 237

Query: 192 GPSCIHRLTFRPLRN 206
           G   IHR TF P++ 
Sbjct: 238 GICPIHRKTFAPVKQ 252


>gi|261419405|ref|YP_003253087.1| ribonuclease HII [Geobacillus sp. Y412MC61]
 gi|319766220|ref|YP_004131721.1| ribonuclease H [Geobacillus sp. Y412MC52]
 gi|261375862|gb|ACX78605.1| Ribonuclease H [Geobacillus sp. Y412MC61]
 gi|317111086|gb|ADU93578.1| Ribonuclease H [Geobacillus sp. Y412MC52]
          Length = 260

 Score =  243 bits (620), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 85/196 (43%), Positives = 121/196 (61%), Gaps = 3/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  +    +  +AGIDE GRG LAGPVV AA+IL  +    G++DSK+++ +KRE L+
Sbjct: 60  RYERELYAAGVRRIAGIDEAGRGPLAGPVVAAAVILPKDAYLPGLDDSKRLTPEKREALF 119

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I + A+ I I   S   ID+ NI++AT  A+  AV  L   P   L+D  ++P  LP 
Sbjct: 120 AQIEACAVAIGIGIVSAAEIDERNIYEATRQAMAKAVNALSPPPEHLLVDAMAVPCPLP- 178

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +IKGD+ S SIAAAS+IAKVTRDR M+   ++YP YGF  H+GY T +H + I+  
Sbjct: 179 -QQRLIKGDANSASIAAASVIAKVTRDRWMKELDRRYPQYGFARHMGYGTPEHFEAIRRY 237

Query: 192 GPSCIHRLTFRPLRNL 207
           G +  HR +F P+R +
Sbjct: 238 GVTPEHRRSFAPVREV 253


>gi|254805764|ref|YP_003083985.1| Ribonuclease HII [Neisseria meningitidis alpha14]
 gi|254669306|emb|CBA08298.1| Ribonuclease HII [Neisseria meningitidis alpha14]
          Length = 194

 Score =  243 bits (620), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 81/182 (44%), Positives = 105/182 (57%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86
           AG+DE GRG L G V  AA+IL       G+ DSKK+S KKR+ L E I   A     +A
Sbjct: 6   AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDTLAEMIKDQAAAWHVAA 65

Query: 87  -SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  + 
Sbjct: 66  ATPEEIASLNILHATMLAMKRAVDGLVVHPEKIFIDGNRIPEHLGIPAEAVVKGDSKIIE 125

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P+R
Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185

Query: 206 NL 207
           NL
Sbjct: 186 NL 187


>gi|228474964|ref|ZP_04059692.1| ribonuclease HII [Staphylococcus hominis SK119]
 gi|228270949|gb|EEK12337.1| ribonuclease HII [Staphylococcus hominis SK119]
          Length = 255

 Score =  243 bits (620), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 81/196 (41%), Positives = 117/196 (59%), Gaps = 4/196 (2%)

Query: 14  LEAMVREKN-MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
            E  + + N    + GIDEVGRG LAGPVV  A+IL+  +   G++DSKK+S  KR+ L 
Sbjct: 61  YENKILKDNPNALICGIDEVGRGPLAGPVVACAVILNKEHQYLGLDDSKKVSATKRKILN 120

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E++       +   AS + ID+ NI+ AT  A+  A+  L+  P   LID  ++   +P 
Sbjct: 121 EQLKEGVYDYAYGIASAEEIDEFNIYNATKLAMERAINQLKQQPNHLLIDAMTLDNAMP- 179

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASI+AK  RD LM     KYP Y F+ +VGY T  H Q +K+ 
Sbjct: 180 -QTSIIKGDAKSVSIAAASIMAKEYRDGLMAAVALKYPGYDFEKNVGYGTKSHLQGLKQL 238

Query: 192 GPSCIHRLTFRPLRNL 207
           G +  HR TF P++++
Sbjct: 239 GITPYHRKTFEPVKSM 254


>gi|260752544|ref|YP_003225437.1| ribonuclease H [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258551907|gb|ACV74853.1| Ribonuclease H [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 215

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 87/202 (43%), Positives = 125/202 (61%), Gaps = 9/202 (4%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P    E  ++      V G+DEVGRG LAGPV+  A+ L   +IP GINDSKK++ ++R 
Sbjct: 14  PDLSYEDRIK----GVVFGVDEVGRGPLAGPVMAGAVYLHREHIPEGINDSKKLTARRRH 69

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL----QVIPRSALIDGRSI 125
            L + + + A  +   A+   ID+ NI +A+L A+  AVE L       P   L+DGR I
Sbjct: 70  LLSDMLHNQADYATGMANVHEIDRINIRQASLLAMKRAVEALIQKIGREPDCILVDGRDI 129

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P D P  +  +IKGDS+SLSIAAASI+AKV RD +M  A ++YP YG++ ++GYPT +H+
Sbjct: 130 P-DWPWLSLPIIKGDSLSLSIAAASIVAKVERDEIMVKASQEYPGYGWEHNMGYPTKEHR 188

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
           + I+   P+  HR +F P+R  
Sbjct: 189 EAIQRLKPTKFHRRSFSPIRQF 210


>gi|255069909|ref|XP_002507036.1| ribonuclease HII [Micromonas sp. RCC299]
 gi|226522311|gb|ACO68294.1| ribonuclease HII [Micromonas sp. RCC299]
          Length = 262

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 83/200 (41%), Positives = 120/200 (60%), Gaps = 2/200 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P  + E          V G+DE GRG LAGPVV AA +   + +   INDSK+++ ++RE
Sbjct: 54  PSRDAERRCWSAGKKIVCGVDEAGRGPLAGPVVAAACVFPEDLVIDAINDSKQMTEEERE 113

Query: 70  ELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E+YE++ ++  +  S+    H+ ID+ NI +AT+ A+  +VE L       LIDG  +P 
Sbjct: 114 EVYEELMANDQVIKSVCVIDHERIDEINILEATMQAMAKSVEGLSTRADWVLIDGNRVPP 173

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            L  +A A++KGD+ S+ IAAAS++AKVTRDR+M   H +YP YGFD H GY    H   
Sbjct: 174 PLIDRAEAIVKGDAKSVCIAAASVLAKVTRDRMMVKIHDEYPVYGFDQHKGYGVKAHMDA 233

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           I + GP   HR TF P++ +
Sbjct: 234 IHKHGPCPYHRKTFAPMKYM 253


>gi|297530620|ref|YP_003671895.1| ribonuclease H [Geobacillus sp. C56-T3]
 gi|297253872|gb|ADI27318.1| Ribonuclease H [Geobacillus sp. C56-T3]
          Length = 260

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 85/196 (43%), Positives = 121/196 (61%), Gaps = 3/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  +    +  +AGIDE GRG LAGPVV AA+IL  +    G++DSK+++ +KRE L+
Sbjct: 60  RYERELYAAGVRRIAGIDEAGRGPLAGPVVAAAVILPKDAYLPGLDDSKRLTPEKREALF 119

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I + A+ I I   S   ID+ NI++AT  A+  AV  L   P   L+D  ++P  LP 
Sbjct: 120 AQIEACAVAIGIGIVSAAEIDERNIYEATRQAMAKAVNALSPPPEHLLVDAMAVPCPLP- 178

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +IKGD+ S SIAAAS+IAKVTRDR M+   ++YP YGF  H+GY T +H + I+  
Sbjct: 179 -QQRLIKGDANSASIAAASVIAKVTRDRWMKELDRRYPQYGFARHMGYGTPEHFEAIRRY 237

Query: 192 GPSCIHRLTFRPLRNL 207
           G +  HR +F P+R +
Sbjct: 238 GVTPEHRRSFAPVREV 253


>gi|56419740|ref|YP_147058.1| ribonuclease HII [Geobacillus kaustophilus HTA426]
 gi|81347633|sp|Q5L0P0|RNH2_GEOKA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|56379582|dbj|BAD75490.1| ribonuclease HII [Geobacillus kaustophilus HTA426]
          Length = 260

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 85/196 (43%), Positives = 121/196 (61%), Gaps = 3/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  +    +  +AGIDE GRG LAGPVV AA+IL  +    G++DSK+++ +KRE L+
Sbjct: 60  RYERELYAAGVRRIAGIDEAGRGPLAGPVVAAAVILPKDAYLPGLDDSKRLTPEKREALF 119

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I + A+ I I   S   ID+ NI++AT  A+  AV  L   P   L+D  ++P  LP 
Sbjct: 120 AQIEACAVAIGIGIVSAAEIDERNIYEATRQAMAKAVNALSPPPEHLLVDAMAVPCPLP- 178

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +IKGD+ S SIAAAS+IAKVTRDR M+   ++YP YGF  H+GY T +H + I+  
Sbjct: 179 -QQRLIKGDANSASIAAASVIAKVTRDRWMKELDRRYPQYGFARHMGYGTPEHFEAIRRY 237

Query: 192 GPSCIHRLTFRPLRNL 207
           G +  HR +F P+R +
Sbjct: 238 GVTPEHRRSFAPVREV 253


>gi|194289778|ref|YP_002005685.1| ribonuclease hii [Cupriavidus taiwanensis LMG 19424]
 gi|193223613|emb|CAQ69620.1| RIBONUCLEASE HII PROTEIN [Cupriavidus taiwanensis LMG 19424]
          Length = 258

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 81/188 (43%), Positives = 114/188 (60%), Gaps = 5/188 (2%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81
           +  + G+DE GRG LAGPV  AA++LDP     G+ DSK ++  KRE LYEKI   A+  
Sbjct: 26  IQRLCGVDEAGRGPLAGPVYAAAVVLDPKRPIRGLADSKILTAAKREALYEKICERALGW 85

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLPCQAFAVIK 138
            I+ A+ + ID  NI  A++ A+  AV+ L    V+P    +DG   P+ +     A++K
Sbjct: 86  HIAFATVEEIDTINILHASMLAMQRAVQGLAASGVVPDLVQVDGNRCPQ-VAYPVEAIVK 144

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD++  +I+AASI+AKV RDR +   H  YP YGFDSHVGY T +H   + E G +  HR
Sbjct: 145 GDALVKAISAASILAKVARDRALMELHAAYPQYGFDSHVGYGTPQHMAALAEFGATPHHR 204

Query: 199 LTFRPLRN 206
            +F P+R 
Sbjct: 205 RSFAPVRE 212


>gi|251797462|ref|YP_003012193.1| ribonuclease H [Paenibacillus sp. JDR-2]
 gi|247545088|gb|ACT02107.1| Ribonuclease H [Paenibacillus sp. JDR-2]
          Length = 203

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 86/192 (44%), Positives = 117/192 (60%), Gaps = 4/192 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            E E  +  +    +AG+DEVGRG L G VV AA+IL P+ +  G+NDSKK+S KKR EL
Sbjct: 2   LEYEERLWAEGYSAIAGVDEVGRGCLFGDVVAAAVILPPHLVLEGVNDSKKLSEKKRNEL 61

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I   +I  + +    + ID+ NI +A   A+  A+E+L+  P   L+D   +  DLP
Sbjct: 62  YDIIVDQSIAWAAARVDAETIDRINIKQAARLAMKIALESLKTEPDYFLVDAEKV--DLP 119

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMR-IAHKKYPDYGFDSHVGYPTAKHQQVIK 189
               A+IKGD+ S SIAAASIIAKVTRDRL      + YP+YG   H GY T  H++ + 
Sbjct: 120 KPQLAIIKGDATSQSIAAASIIAKVTRDRLCEKEWEQLYPEYGIAIHKGYATKLHRERLL 179

Query: 190 EKGPSCIHRLTF 201
           E G S +HR +F
Sbjct: 180 EYGASPLHRKSF 191


>gi|332184412|gb|AEE26666.1| Ribonuclease HII [Francisella cf. novicida 3523]
          Length = 185

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 82/185 (44%), Positives = 117/185 (63%), Gaps = 2/185 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             + GIDE GRG L+GPVV A ++LDPN I  G+ DSKK++ KKR+ LY++I S A   +
Sbjct: 1   MIILGIDEAGRGPLSGPVVAAGVVLDPNIIIDGLADSKKLTEKKRQSLYQQIISHAKAYT 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I   S   ID+ NI +ATL A++   +NL+      L+DG  +P +    + A++KGDS 
Sbjct: 61  IVEISSHQIDELNILQATLKAMHQVADNLKGQFDKILVDGNKLP-NWNYNSEAIVKGDSK 119

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            L I+AASI+AKV RD +     + YP YGF  H GYPT +H + IK+ G   IHR +++
Sbjct: 120 ILEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYK 179

Query: 203 PLRNL 207
           P++ L
Sbjct: 180 PVQIL 184


>gi|325139084|gb|EGC61630.1| ribonuclease HII [Neisseria meningitidis ES14902]
          Length = 194

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/182 (43%), Positives = 105/182 (57%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86
           AG+DE GRG   G V  AA+IL       G+ DSKK+S KKR+ L E I + A     +A
Sbjct: 6   AGVDEAGRGPFVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKNQAAAWHVAA 65

Query: 87  -SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + I   NI  AT+ A+  AV+ L V P    IDG  IPE L   A AV+KGDS  + 
Sbjct: 66  ATPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHLGIPAEAVVKGDSKIIE 125

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AAS++AK  RD  M    +++P YGFD H GY T +H + +K+ G    HR  F P+R
Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185

Query: 206 NL 207
           NL
Sbjct: 186 NL 187


>gi|261400117|ref|ZP_05986242.1| ribonuclease HII [Neisseria lactamica ATCC 23970]
 gi|269210350|gb|EEZ76805.1| ribonuclease HII [Neisseria lactamica ATCC 23970]
          Length = 194

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 79/182 (43%), Positives = 106/182 (58%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86
           AG+DE GRG L G V  AA+IL       G+ DSKK+S KKR+ L E I + A     +A
Sbjct: 6   AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKNQAAAWHVAA 65

Query: 87  S-HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           +  + I   NI  AT+ A+  A++ L V P    IDG  IPE L   A AV+KGDS  + 
Sbjct: 66  AGPEEIAGLNILHATMLAMKRAIDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AAS++AK  RD  M    +++P YGFD H GY T +H + +++ G    HR  F P+R
Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALEKYGVLPEHRRDFAPVR 185

Query: 206 NL 207
           NL
Sbjct: 186 NL 187


>gi|199599536|ref|ZP_03212924.1| Ribonuclease HII [Lactobacillus rhamnosus HN001]
 gi|258508404|ref|YP_003171155.1| ribonuclease HII [Lactobacillus rhamnosus GG]
 gi|199589577|gb|EDY97695.1| Ribonuclease HII [Lactobacillus rhamnosus HN001]
 gi|257148331|emb|CAR87304.1| Ribonuclease HII [Lactobacillus rhamnosus GG]
 gi|259649719|dbj|BAI41881.1| ribonuclease HII [Lactobacillus rhamnosus GG]
          Length = 252

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 85/194 (43%), Positives = 120/194 (61%), Gaps = 5/194 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  + +     VAG+DEVGRG LAGPVV AA+IL P+   + +NDSK+++  +R+ LY
Sbjct: 58  RYERKLWKM-YSHVAGLDEVGRGPLAGPVVTAAVIL-PHQFKWPVNDSKQLTAHERDVLY 115

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I + AI + I  A +  ID+ NI+ AT  A+  AV +L+V P   L+D   +P +LP 
Sbjct: 116 PHILTEAIAVGIGVADNHEIDRENIYHATELAMAQAVSHLRVAPEFLLVDAMHVPVNLP- 174

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +IKGD+ S+SIAAASI+AKV RDRLM +  + YP Y F  ++GY T  H   +   
Sbjct: 175 -QERLIKGDANSISIAAASIVAKVIRDRLMVMYDRVYPGYDFKDNMGYGTKAHLAGLATH 233

Query: 192 GPSCIHRLTFRPLR 205
           G + IHR +F P+R
Sbjct: 234 GVTPIHRRSFGPVR 247


>gi|114705285|ref|ZP_01438193.1| ribonuclease HII protein [Fulvimarina pelagi HTCC2506]
 gi|114540070|gb|EAU43190.1| ribonuclease HII protein [Fulvimarina pelagi HTCC2506]
          Length = 245

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 97/197 (49%), Positives = 131/197 (66%), Gaps = 1/197 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKR 68
           P F  E  + E     +AG+DEVGRG LAGPVV AA+I  +P  IP GINDSK+++ K R
Sbjct: 19  PDFSREHALLEAGAEWIAGVDEVGRGPLAGPVVAAAVIFENPRRIPVGINDSKQLTAKAR 78

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           E+L+  I ++A ++I+S S + ID  +I +ATL A+  A+  L + P  AL DGR +P  
Sbjct: 79  EQLFADILANAHVAIASVSAKEIDAIDIRQATLTAMTKALAQLVIRPCHALFDGRDVPPA 138

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
                 A++KGDSIS+SIAAASI+AKV RDR+M+ A   YP YGF ++VGY  A H   I
Sbjct: 139 WTANGTAIVKGDSISVSIAAASIVAKVQRDRMMQHACGLYPGYGFTTNVGYGCAAHLAAI 198

Query: 189 KEKGPSCIHRLTFRPLR 205
              GP+ IHR++F+PLR
Sbjct: 199 AALGPTPIHRMSFKPLR 215


>gi|114562462|ref|YP_749975.1| ribonuclease H [Shewanella frigidimarina NCIMB 400]
 gi|122300308|sp|Q085C8|RNH2_SHEFN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|114333755|gb|ABI71137.1| Ribonuclease H [Shewanella frigidimarina NCIMB 400]
          Length = 212

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 86/182 (47%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S K+R  LY++I  +A+ +S
Sbjct: 22  GLVAGVDEVGRGPLIGDVVTAAVILDPNKPIVGLNDSKKLSEKRRNALYQQIMDNALSVS 81

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  AS   ID+ NI  AT+ A+  AV  L ++P   L+DG  +P D    + A+IKGD +
Sbjct: 82  VGRASPAEIDELNILHATMLAMQRAVAGLSILPERVLVDGNRVP-DFGIASHAIIKGDGL 140

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +I+AASIIAKVTRD  M     +YP YGF  H GYPT  H + +   G    HR +F+
Sbjct: 141 VAAISAASIIAKVTRDAEMDTLDSQYPQYGFAKHKGYPTKAHFEALALYGVLPDHRKSFK 200

Query: 203 PL 204
           P+
Sbjct: 201 PV 202


>gi|228471979|ref|ZP_04056747.1| ribonuclease HII [Capnocytophaga gingivalis ATCC 33624]
 gi|228276591|gb|EEK15304.1| ribonuclease HII [Capnocytophaga gingivalis ATCC 33624]
          Length = 197

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 68/179 (37%), Positives = 102/179 (56%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL  +     +NDSK+++ K+R  L   I   A+  ++  
Sbjct: 11  AGTDEAGRGCLAGPVTAAAVILPEDFYHPLLNDSKQMTEKQRNLLRPIIEEQALSYAVVH 70

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + ID+ NI  A+++A++ A++ L + P   ++DG              +KGD   + 
Sbjct: 71  LSPERIDQINILNASIEAMHQALDKLTLTPEFVVVDGNRFKPYKEIPYSCQVKGDGRFMR 130

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAAS++AK  RD  M   HK+YP Y +D + GYPT +H++ I E G    HR TF+ +
Sbjct: 131 IAAASVLAKTYRDAYMETLHKQYPMYHWDKNKGYPTREHREAILEYGACEHHRKTFQLI 189


>gi|302771367|ref|XP_002969102.1| ribonuclease H11 [Selaginella moellendorffii]
 gi|300163607|gb|EFJ30218.1| ribonuclease H11 [Selaginella moellendorffii]
          Length = 195

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 93/192 (48%), Positives = 120/192 (62%), Gaps = 7/192 (3%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS--AIIS 82
            V G+DE GRG LAGPVV AA I+  +    GI+DSKK++ +KRE+LY +ITS+     S
Sbjct: 2   RVIGVDEAGRGPLAGPVVAAACIIPEDVDIQGIDDSKKLTAEKREQLYSQITSTPGVRFS 61

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENL----QVIPRSALIDGRSIPEDLPCQ-AFAVI 137
           I       ID+ NI +AT++A+   VE L    +  P   LIDG  IP  L  + A +V+
Sbjct: 62  ICVVDAPRIDEINILQATMEAMETCVEELTGNGRDHPPYILIDGNRIPGGLSGKHARSVV 121

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGD+ S  IAAASI+AKVTRDRLM    K++P YGF  H GY TA H   + + GP  IH
Sbjct: 122 KGDAESHVIAAASILAKVTRDRLMEDYDKRWPLYGFKDHKGYGTASHTAALLKHGPCDIH 181

Query: 198 RLTFRPLRNLSV 209
           R +F PLRNL +
Sbjct: 182 RRSFAPLRNLIL 193


>gi|255002889|ref|ZP_05277853.1| ribonuclease HII [Anaplasma marginale str. Puerto Rico]
          Length = 238

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 90/205 (43%), Positives = 124/205 (60%), Gaps = 3/205 (1%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKI 63
           +   P F +E  +R   +  + G+DEVG GA+AGPVV AA+ L     +    I DSK +
Sbjct: 1   MNRMPSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKAL 60

Query: 64  SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
           S KKREEL+ KIT+ A   +  A  + I++HNI  A+  ++   ++NL V     L+DG 
Sbjct: 61  SSKKREELFCKITAHAKYGVGFARVREIEQHNILVASHISMKT-LQNLGVKADLVLVDGS 119

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
             P  LP     ++KGDSIS SIAAASIIAKVTRDR MR  H++YP+Y ++ + GY T  
Sbjct: 120 RAPAGLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKA 179

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLS 208
           H Q +K  G +  HR TF P++ LS
Sbjct: 180 HMQSLKLYGKTAQHRSTFAPVKQLS 204


>gi|282879385|ref|ZP_06288128.1| ribonuclease HII [Prevotella buccalis ATCC 35310]
 gi|281298498|gb|EFA90924.1| ribonuclease HII [Prevotella buccalis ATCC 35310]
          Length = 203

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 71/179 (39%), Positives = 105/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL PN     +NDSK++S KKR+ L + I + A+  ++  
Sbjct: 16  AGCDEAGRGCLAGSVFAAAVILPPNYDNADLNDSKQLSRKKRDALRQAIINDAVAWAVGE 75

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + Q ID+ NI +A+  A++ A++ L   P++ ++DG             +IKGD     
Sbjct: 76  VTPQEIDEINILRASFLAMHRALDQLTTRPQAIIVDGNRFTPYHDLPYTTIIKGDGKYQD 135

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M    ++YP Y + S++GYPT KH++ I+  G +  HR +F  L
Sbjct: 136 IAAASILAKTFRDDYMDRLAQEYPQYDWQSNMGYPTRKHREAIRAYGITPYHRRSFNLL 194


>gi|189499018|ref|YP_001958488.1| ribonuclease HII [Chlorobium phaeobacteroides BS1]
 gi|189494459|gb|ACE03007.1| Ribonuclease H [Chlorobium phaeobacteroides BS1]
          Length = 207

 Score =  242 bits (618), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 87/201 (43%), Positives = 110/201 (54%), Gaps = 7/201 (3%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKKR 68
           + E          V GIDE GRG LAGPVV AA++      P G    +NDSK +  K+R
Sbjct: 7   DYEEKFW-HEHTCVCGIDEAGRGPLAGPVVAAAVMFPRYFKPEGVLTGLNDSKTLRPKQR 65

Query: 69  EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
             L E I S+A   SIS   H  ID  NI  AT+ A+  A E L+ +P   LIDG     
Sbjct: 66  SALAEAIQSAAECFSISIIDHTTIDSVNIFNATMLAMNAAAEKLEQLPGLLLIDGNRFVP 125

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            LP     ++KGD+  +SIAAASI+AK  RDR+M   H++YP+YGF  H GYPT  H   
Sbjct: 126 SLPIPYLTIVKGDTKVVSIAAASILAKTCRDRIMNEYHREYPEYGFAQHFGYPTQAHIAA 185

Query: 188 IKEKGPSCIHRLTFRPLRNLS 208
           I   G   IHR +FR ++ L 
Sbjct: 186 IARYGRCPIHRTSFR-VKQLG 205


>gi|299067473|emb|CBJ38672.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum CMR15]
          Length = 236

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 75/194 (38%), Positives = 115/194 (59%), Gaps = 5/194 (2%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76
              ++    + G+DE GRG LAGPV   A++L+P     G+ DSK ++ KKRE LY++I 
Sbjct: 20  AAGKRARRILCGVDEAGRGPLAGPVTAGAVVLNPRKPIQGLADSKVLTAKKREALYDEIV 79

Query: 77  SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLPCQ 132
             A+   ++ A+ + ID+ NI  AT+ A+  AV+ +    V+P    +DG   P+ +   
Sbjct: 80  EKALAWHVAEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVDGNRCPQ-VAFA 138

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             A++KGD++  +I+AASI+AKVTRDR +   H  +P YGFD H GY T +H   I+  G
Sbjct: 139 VEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPQYGFDVHAGYGTPQHLAAIERHG 198

Query: 193 PSCIHRLTFRPLRN 206
            +  HR +F P+R 
Sbjct: 199 VTPHHRRSFAPVRR 212


>gi|251810677|ref|ZP_04825150.1| ribonuclease HII [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805837|gb|EES58494.1| ribonuclease HII [Staphylococcus epidermidis BCM-HMP0060]
          Length = 260

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 78/184 (42%), Positives = 115/184 (62%), Gaps = 3/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            + GIDEVGRG LAGPVV  A+IL+ N+   G++DSKK+S K R  L + +  +    + 
Sbjct: 77  LICGIDEVGRGPLAGPVVACAVILEKNHHYIGLDDSKKVSPKNRARLNQNLKENVYQYAY 136

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             AS   ID+ NI++AT  A+  A+  L V P   LID  ++  D+     ++IKGD+ S
Sbjct: 137 GIASSVEIDELNIYRATQLAMLRAINQLDVTPTHLLIDAMTL--DIDIPQTSIIKGDAKS 194

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           +SIAAASI+AK  RD+ MR   K++P+YGFD + GY T +H + I + G    HR +F P
Sbjct: 195 VSIAAASIMAKEYRDQYMRQLSKQFPEYGFDKNAGYGTKQHLKAIDQVGIINEHRQSFEP 254

Query: 204 LRNL 207
           ++++
Sbjct: 255 IKSM 258


>gi|242242528|ref|ZP_04796973.1| ribonuclease HII [Staphylococcus epidermidis W23144]
 gi|242233955|gb|EES36267.1| ribonuclease HII [Staphylococcus epidermidis W23144]
          Length = 260

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 79/184 (42%), Positives = 115/184 (62%), Gaps = 3/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            + GIDEVGRG LAGPVV  A+IL+ N+   G++DSKK+S K R  L + +  +    + 
Sbjct: 77  LICGIDEVGRGPLAGPVVACAVILEKNHHYIGLDDSKKVSPKNRARLNQNLKENVYQYAY 136

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             AS   ID+ NI++AT  A+  A+ +L V P   LID  ++  D+     ++IKGD+ S
Sbjct: 137 GIASSVEIDELNIYRATQLAMLRAINHLDVTPTHLLIDAMTL--DIDIPQTSIIKGDAKS 194

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           +SIAAASI+AK  RD+ MR   K++PDYGFD + GY T +H + I   G    HR +F P
Sbjct: 195 VSIAAASIMAKEYRDQYMRQLSKQFPDYGFDKNAGYGTKQHLEAIDRVGFINEHRQSFEP 254

Query: 204 LRNL 207
           ++++
Sbjct: 255 IKSM 258


>gi|296444554|ref|ZP_06886518.1| Ribonuclease H [Methylosinus trichosporium OB3b]
 gi|296257822|gb|EFH04885.1| Ribonuclease H [Methylosinus trichosporium OB3b]
          Length = 200

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 97/198 (48%), Positives = 128/198 (64%), Gaps = 2/198 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           PHF LE  +    +WPVAG+DE GRG LAGPV  AA+ILDP  +P G++DSK ++ + R 
Sbjct: 3   PHFRLETRLLRDGLWPVAGVDEAGRGPLAGPVAAAAVILDPRRLPEGVDDSKALTAEARA 62

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
             +E+I +SA+ I ++  S + ID  NI +ATL A+  AV  L + PR ALIDG   P  
Sbjct: 63  AAFERIAASALAIGVAFVSAEEIDAMNIRQATLAAMARAVAALSLAPRHALIDGND-PPS 121

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L C A A++KGD+  LSIAAASI+AKV RDR MR   + YP YGF ++ GY T +H   I
Sbjct: 122 LACPAEAIVKGDASCLSIAAASIVAKVMRDRQMRRLAELYPAYGFAANAGYGTKEHLAAI 181

Query: 189 KEKGPSCIHRLTFRPLRN 206
              GP+  HR +F P+R 
Sbjct: 182 AALGPTPHHRTSFSPMRR 199


>gi|300704217|ref|YP_003745820.1| ribonuclease hII (RNAse hII) [Ralstonia solanacearum CFBP2957]
 gi|299071881|emb|CBJ43210.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum CFBP2957]
          Length = 236

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 78/207 (37%), Positives = 120/207 (57%), Gaps = 9/207 (4%)

Query: 8   ERPHFELEA----MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           E P F L         +++   + G+DE GRG LAGPV   A++L+P     G+ DSK +
Sbjct: 7   ETPQFALPLSQSPAAGKRSRRILCGVDEAGRGPLAGPVTAGAVVLNPRKPIKGLADSKVL 66

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSAL 119
           + K+RE LY++I   A+   ++ A+ + ID+ NI  AT+ A+  AV+ +    V+P    
Sbjct: 67  TAKRREALYDEIVEKALAWHVAEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQ 126

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           +DG   P+ +     A++KGD++  +I+AASI+AKVTRDR +   H  +P YGFD H GY
Sbjct: 127 VDGNRCPQ-VAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHVAFPHYGFDVHAGY 185

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRN 206
            T +H   I+  G +  HR +F P+R 
Sbjct: 186 GTPQHLAAIERHGVTPHHRRSFAPVRR 212


>gi|300691590|ref|YP_003752585.1| ribonuclease HII (RNase HII) [Ralstonia solanacearum PSI07]
 gi|299078650|emb|CBJ51308.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum PSI07]
          Length = 242

 Score =  241 bits (617), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 79/212 (37%), Positives = 120/212 (56%), Gaps = 9/212 (4%)

Query: 3   CNSIPERPHFELEAM----VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN 58
            +  P+ P   L          +    + G+DE GRG LAGPV  AA++L+P     G+ 
Sbjct: 8   ADDSPDAPQLALPLAQLPAAGRRARRILCGVDEAGRGPLAGPVTAAAVVLNPRKPIKGLA 67

Query: 59  DSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVI 114
           DSK ++ KKRE LY++I   A+   ++ A+ + ID+ NI  AT+ A+  AV+ +    V+
Sbjct: 68  DSKVLTAKKREALYDEIVEKALAWHVAEATVEEIDRINILHATMLAMQRAVQGVAAQGVL 127

Query: 115 PRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174
           P    +DG   P+ +     A++KGD++  +I+AASI+AKVTRDR +   H  +P YGFD
Sbjct: 128 PDLVQVDGNRCPQ-VAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFD 186

Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
            H GY T +H   I+  G +  HR +F P+R 
Sbjct: 187 VHAGYGTPQHLAAIELHGVTPHHRRSFAPVRR 218


>gi|329954154|ref|ZP_08295249.1| ribonuclease HII [Bacteroides clarus YIT 12056]
 gi|328528131|gb|EGF55111.1| ribonuclease HII [Bacteroides clarus YIT 12056]
          Length = 199

 Score =  241 bits (617), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 75/179 (41%), Positives = 105/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK+++ K+R  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPKDFENDLLNDSKQLTEKQRYALREVIEKEALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + IDK NI  A+  A++ AV+ LQ+ P+  LIDG    +        V+KGD   LS
Sbjct: 73  VSPKEIDKINILNASFLAMHRAVDRLQLRPQHLLIDGNRFRKYGDIPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H+++P Y ++ + GYPT KH+  I  +G +  HR+TF  L
Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWNHNKGYPTKKHRAAIAGRGTTPYHRMTFNLL 191


>gi|325269676|ref|ZP_08136289.1| ribonuclease HII [Prevotella multiformis DSM 16608]
 gi|324988044|gb|EGC20014.1| ribonuclease HII [Prevotella multiformis DSM 16608]
          Length = 200

 Score =  241 bits (617), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 70/179 (39%), Positives = 103/179 (57%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL P      ++DSKK++  KR  L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPPGYRNCELDDSKKLTPGKRYALRETIEHDALAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + ID+ NI  A+  A++ A++ L+V P + ++DG             ++KGD   LS
Sbjct: 73  VTPEEIDRINILNASFLAMHRALDQLKVRPEAVIVDGNRFTPYRKLPFATIVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M    ++YP Y +  ++GYPT KH+Q I+E G +  HR ++  L
Sbjct: 133 IAAASILAKTYRDDYMCSLAEEYPQYDWQKNMGYPTKKHRQAIREYGITPYHRKSYNLL 191


>gi|330813681|ref|YP_004357920.1| ribonuclease HII [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486776|gb|AEA81181.1| ribonuclease HII [Candidatus Pelagibacter sp. IMCC9063]
          Length = 199

 Score =  241 bits (617), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 80/199 (40%), Positives = 120/199 (60%), Gaps = 4/199 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           +F+ E  +       + G+DEVGRG LAGPVV AA+IL+P+     INDSKKIS KKR  
Sbjct: 3   NFKRELQISNN----IIGVDEVGRGPLAGPVVAAAVILNPDICLKEINDSKKISKKKRNN 58

Query: 71  LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++ KI + +  +I  +S + I+K+NI +A+L A+  AV +L  +  + L+DG    +   
Sbjct: 59  VFFKIINHSKFAIGFSSVEEIEKYNILQASLTAMKRAVTSLGTLKSTILVDGIHSFDKKN 118

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            +    +KGD    SIAAASI+AKV RD  M I  KKY  YG++ + GY T++H   +K+
Sbjct: 119 KKILTFVKGDEQFPSIAAASILAKVLRDNYMCILAKKYKGYGWEKNSGYGTSEHMGAMKK 178

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            G + +HR  F P+  + +
Sbjct: 179 FGLTPLHRKNFAPVHKMLL 197


>gi|126655902|ref|ZP_01727341.1| Ribonuclease HII/HIII [Cyanothece sp. CCY0110]
 gi|126623381|gb|EAZ94086.1| Ribonuclease HII/HIII [Cyanothece sp. CCY0110]
          Length = 199

 Score =  241 bits (617), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 80/194 (41%), Positives = 115/194 (59%), Gaps = 5/194 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69
           + A +   +   +AG+DEVGRG L GPVV AA++L+ ++IP     G+ DSKK+S K+RE
Sbjct: 1   MSAQLFSHSQILIAGVDEVGRGCLFGPVVAAAVVLEKSSIPQLQEIGVKDSKKLSAKRRE 60

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            L   I + AI   IS AS Q ID+ NI  A+L A+  ++  L + P+  LIDG     +
Sbjct: 61  TLATAIKNRAISYHISYASSQEIDRLNILNASLLAMKRSITKLSITPQLCLIDGNQKVPN 120

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L      +I GD  S  IAAASI+AKV RD+L+     KYP Y  +++ GY T KH+  +
Sbjct: 121 LTIPQETIIGGDKSSPLIAAASILAKVWRDQLIVRLAAKYPHYDLENNKGYGTKKHRLAL 180

Query: 189 KEKGPSCIHRLTFR 202
           ++ G    HR +F+
Sbjct: 181 QQYGLCFHHRRSFK 194


>gi|332884737|gb|EGK04993.1| ribonuclease HII [Dysgonomonas mossii DSM 22836]
          Length = 199

 Score =  241 bits (617), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 72/176 (40%), Positives = 103/176 (58%), Gaps = 1/176 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  + I   +NDSK+++ K+R  L   I   A+  +I  
Sbjct: 13  AGCDEAGRGCLAGAVFAAAVILPKDFICEKLNDSKQLTEKERYALRPLIEEQALAWAIGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + ID+ NI  A+  A+  AV +L+  P+  LIDG    +        V+KGD   L 
Sbjct: 73  VNQKEIDEINILNASFLAMQRAVASLKTRPQHLLIDGNRFRKYEDIPHTCVVKGDGKLLP 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           IAAAS++AK  RD  M   H+++P Y +D + GYPT KH++ I++ G +  HRLTF
Sbjct: 133 IAAASVLAKTYRDDYMLNLHREHPLYDWDHNKGYPTKKHREAIEKYGVTPYHRLTF 188


>gi|195978102|ref|YP_002123346.1| ribonuclease HII [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|259494073|sp|B4U2W6|RNH2_STREM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|195974807|gb|ACG62333.1| ribonuclease HII RnhB [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 260

 Score =  241 bits (617), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 84/202 (41%), Positives = 122/202 (60%), Gaps = 6/202 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +K    +AGIDEVGRG LAGP+V A +IL       G+NDSKKI   K E +
Sbjct: 60  LTYEQALYQKGFQAIAGIDEVGRGPLAGPIVAACVILPKGCTIKGLNDSKKIPKAKHEAI 119

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127
           Y+ I   A+ I +    +  ID+ NI++AT  A+  A+  L+     P   LID  ++  
Sbjct: 120 YQAIQKKALGIGLGIIDNHTIDRVNIYEATKLAMIAAINQLKGSVSKPDYLLIDAMTL-- 177

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           ++P    A+IKGD+ S+SIAAASI+AKVTRDRLM    K +P YGF  + GY T +H Q 
Sbjct: 178 EVPIPQQAIIKGDASSMSIAAASIVAKVTRDRLMLDYDKAFPGYGFAKNAGYGTKEHLQG 237

Query: 188 IKEKGPSCIHRLTFRPLRNLSV 209
           + + G + IHR +F P++++++
Sbjct: 238 LHQYGITPIHRQSFEPIKSMTL 259


>gi|293366790|ref|ZP_06613466.1| ribonuclease HII [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291319091|gb|EFE59461.1| ribonuclease HII [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 260

 Score =  241 bits (617), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 77/184 (41%), Positives = 114/184 (61%), Gaps = 3/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            + GIDEVGRG LAGPVV  A+IL+ N+   G++DSKK+S   R  L + +  +    + 
Sbjct: 77  LICGIDEVGRGPLAGPVVACAVILEKNHHYIGLDDSKKVSPNNRARLNQNLKENVYQYAY 136

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             AS   ID+ NI++AT  A+  A+  L V P   LID  ++  D+     ++IKGD+ S
Sbjct: 137 GIASSVEIDELNIYRATQLAMLRAINQLDVTPTHLLIDAMTL--DIDIPQTSIIKGDAKS 194

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           +SIAAASI+AK  RD+ MR   K++P+YGFD + GY T +H + I + G    HR +F P
Sbjct: 195 VSIAAASIMAKEYRDQYMRQLSKQFPEYGFDKNAGYGTKQHLKAIDQVGIINEHRQSFEP 254

Query: 204 LRNL 207
           ++++
Sbjct: 255 IKSM 258


>gi|319401464|gb|EFV89674.1| ribonuclease HII [Staphylococcus epidermidis FRI909]
          Length = 256

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 78/184 (42%), Positives = 115/184 (62%), Gaps = 3/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            + GIDEVGRG LAGPVV  A+IL+ N+   G++DSKK+S K R  L + +  +    + 
Sbjct: 73  LICGIDEVGRGPLAGPVVACAVILEKNHHYIGLDDSKKVSPKNRARLNQNLKENVYQYAY 132

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             AS   ID+ NI++AT  A+  A+ +L V P   LID  ++  D+     ++IKGD+ S
Sbjct: 133 GIASSVEIDELNIYRATQLAMLRAINHLDVTPTHLLIDAMTL--DIDIPQTSIIKGDAKS 190

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           +SIAAASI+AK  RD+ M+   K++PDYGFD + GY T +H + I   G    HR +F P
Sbjct: 191 VSIAAASIMAKEYRDQYMKQLSKQFPDYGFDKNAGYGTKQHLEAIDRVGFINEHRQSFEP 250

Query: 204 LRNL 207
           ++++
Sbjct: 251 IKSM 254


>gi|225868570|ref|YP_002744518.1| ribonuclease HII [Streptococcus equi subsp. zooepidemicus]
 gi|225701846|emb|CAW99303.1| ribonuclease HII [Streptococcus equi subsp. zooepidemicus]
          Length = 257

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 84/202 (41%), Positives = 120/202 (59%), Gaps = 6/202 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +K    +AGIDEVGRG LAGPVV A +IL       G+NDSKKI   K E +
Sbjct: 57  LTYEQALYQKGFQAIAGIDEVGRGPLAGPVVAACVILPKGCTIKGLNDSKKIPKAKHEAI 116

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127
           Y+ I   A+ I +    +  ID+ NI++AT  A+  A+  L+     P   LID  ++  
Sbjct: 117 YQAIQKKALGIGLGIIDNHTIDRVNIYEATKLAMIAAINQLKGSVSKPDYLLIDAMTL-- 174

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           ++     A+IKGD+ S+SIAAASI+AKVTRDRLM    K +P YGF  + GY T +H Q 
Sbjct: 175 EVSIPQQAIIKGDASSMSIAAASIVAKVTRDRLMLDYDKTFPGYGFAKNAGYGTKEHLQG 234

Query: 188 IKEKGPSCIHRLTFRPLRNLSV 209
           + + G + IHR +F P++++ +
Sbjct: 235 LHQYGVTPIHRQSFEPIKSMIL 256


>gi|206900540|ref|YP_002251240.1| ribonuclease HII [Dictyoglomus thermophilum H-6-12]
 gi|206739643|gb|ACI18701.1| ribonuclease HII [Dictyoglomus thermophilum H-6-12]
          Length = 203

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 83/193 (43%), Positives = 116/193 (60%), Gaps = 3/193 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E  +       +AG+DE GRGALAGPV   A+IL P +    +NDSK ++ ++REEL+
Sbjct: 13  ERERELWYY-FKYIAGVDEAGRGALAGPVYSGAVILPPFSSIP-VNDSKLLTPREREELF 70

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E I   ++  S   A+ + I+K  I +AT  A+  AVE L++ P   LIDG     D+  
Sbjct: 71  EIIKKESLCWSFGYATVEEIEKFGILQATFLAMKRAVEGLEIKPEYLLIDGNIPIPDIDI 130

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               V+KGD   LSIA+ASI+AKV RD+ M+   K+YP+YGF  H GY T +H++ IK+ 
Sbjct: 131 PQETVVKGDRRCLSIASASIVAKVLRDKYMKELDKEYPEYGFGKHKGYATKEHREKIKDL 190

Query: 192 GPSCIHRLTFRPL 204
           G   IHR  F+ L
Sbjct: 191 GTLVIHRKGFKLL 203


>gi|114776989|ref|ZP_01452009.1| ribonuclease HII [Mariprofundus ferrooxydans PV-1]
 gi|114552510|gb|EAU54970.1| ribonuclease HII [Mariprofundus ferrooxydans PV-1]
          Length = 185

 Score =  241 bits (616), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 85/184 (46%), Positives = 114/184 (61%), Gaps = 3/184 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAI-ISI 83
           +AG+DEVGRG LAGPVV AA+IL P++   G   DSKK++ KKR +LY  I   A+  ++
Sbjct: 2   LAGVDEVGRGPLAGPVVTAAVILSPDDPYLGQYRDSKKVAEKKRLKLYHHIRKHAVAYTV 61

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A+ + ID  NI  AT+ ++  +VE L V P   ++DG  IP DL   A A+I GD + 
Sbjct: 62  TMATVEEIDHLNILHATMLSMRRSVEGLAVRPVRVVVDGNRIP-DLTMPAEAIIGGDDLV 120

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             IAAASIIAKV RDRLM +   ++P Y F  H GY T  H   ++E GP   HR +F P
Sbjct: 121 QEIAAASIIAKVVRDRLMAMLDVRHPGYQFTKHKGYGTKVHMDALREHGPCPAHRRSFAP 180

Query: 204 LRNL 207
           +  L
Sbjct: 181 VTKL 184


>gi|27467840|ref|NP_764477.1| RNase HII [Staphylococcus epidermidis ATCC 12228]
 gi|57866704|ref|YP_188394.1| ribonuclease HII [Staphylococcus epidermidis RP62A]
 gi|282876322|ref|ZP_06285189.1| ribonuclease HII [Staphylococcus epidermidis SK135]
 gi|38258563|sp|Q8CPH6|RNH2_STAES RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|71153705|sp|Q5HPU6|RNH2_STAEQ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|27315385|gb|AAO04519.1|AE016747_16 RNase HII [Staphylococcus epidermidis ATCC 12228]
 gi|57637362|gb|AAW54150.1| ribonuclease HII [Staphylococcus epidermidis RP62A]
 gi|281295347|gb|EFA87874.1| ribonuclease HII [Staphylococcus epidermidis SK135]
 gi|329724332|gb|EGG60844.1| ribonuclease HII [Staphylococcus epidermidis VCU144]
 gi|329736260|gb|EGG72532.1| ribonuclease HII [Staphylococcus epidermidis VCU028]
 gi|329736540|gb|EGG72806.1| ribonuclease HII [Staphylococcus epidermidis VCU045]
          Length = 256

 Score =  241 bits (616), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 78/184 (42%), Positives = 115/184 (62%), Gaps = 3/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            + GIDEVGRG LAGPVV  A+IL+ N+   G++DSKK+S K R  L + +  +    + 
Sbjct: 73  LICGIDEVGRGPLAGPVVACAVILEKNHHYIGLDDSKKVSPKNRARLNQNLKENVYQYAY 132

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             AS   ID+ NI++AT  A+  A+  L V P   LID  ++  D+     ++IKGD+ S
Sbjct: 133 GIASSVEIDELNIYRATQLAMLRAINQLDVTPTHLLIDAMTL--DIDIPQTSIIKGDAKS 190

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           +SIAAASI+AK  RD+ MR   K++P+YGFD + GY T +H + I + G    HR +F P
Sbjct: 191 VSIAAASIMAKEYRDQYMRQLSKQFPEYGFDKNAGYGTKQHLKAIDQVGIINEHRQSFEP 250

Query: 204 LRNL 207
           ++++
Sbjct: 251 IKSM 254


>gi|138894726|ref|YP_001125179.1| ribonuclease HII [Geobacillus thermodenitrificans NG80-2]
 gi|196247655|ref|ZP_03146357.1| Ribonuclease H [Geobacillus sp. G11MC16]
 gi|166225189|sp|A4IM80|RNH2_GEOTN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|134266239|gb|ABO66434.1| Ribonuclease HII [Geobacillus thermodenitrificans NG80-2]
 gi|196212439|gb|EDY07196.1| Ribonuclease H [Geobacillus sp. G11MC16]
          Length = 259

 Score =  241 bits (616), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 85/195 (43%), Positives = 116/195 (59%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  +    +  +AGIDE GRG LAGPVV AA+IL  +    G++DSK+++  KRE L+
Sbjct: 61  RYERELYAAGIERIAGIDEAGRGPLAGPVVAAAVILPKDAYLPGLDDSKRLTPAKREALF 120

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I   A+ I +   S   ID+ NI++AT  A+  AV  L   P   L+D  ++P  LP 
Sbjct: 121 AQIEECAVAIGVGIVSAAEIDEWNIYEATKQAMAKAVAALSPSPEHLLVDAMTVPCALP- 179

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +IKGD+ S SIAAASIIAKVTRDR M    ++YP YGF  H+GY T +H   I+  
Sbjct: 180 -QQRLIKGDANSASIAAASIIAKVTRDRWMHELDRRYPQYGFARHMGYGTPEHLAAIRRY 238

Query: 192 GPSCIHRLTFRPLRN 206
           G +  HR +F P+R 
Sbjct: 239 GVTDEHRRSFAPVRE 253


>gi|289675278|ref|ZP_06496168.1| ribonuclease HII [Pseudomonas syringae pv. syringae FF5]
          Length = 198

 Score =  241 bits (616), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 82/174 (47%), Positives = 108/174 (62%), Gaps = 2/174 (1%)

Query: 33  GRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYI 91
           GRG L G VV AA+ILDP     G+NDSKK++  +RE+L+ +I   A+   I+ A  + I
Sbjct: 2   GRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKLFVEIQEKALCWFIARAEVEEI 61

Query: 92  DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASI 151
           D+ NI  AT+ A+  AVE L + PR ALIDG   P+ L   +  V+KGDS   +IAAASI
Sbjct: 62  DQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQ-LSVPSAPVVKGDSKVPAIAAASI 120

Query: 152 IAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           +AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P+R
Sbjct: 121 LAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPVR 174


>gi|224476370|ref|YP_002633976.1| ribonuclease HII [Staphylococcus carnosus subsp. carnosus TM300]
 gi|254807988|sp|B9DPH3|RNH2_STACT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|222420977|emb|CAL27791.1| putative RNase HII [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 261

 Score =  241 bits (616), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 83/204 (40%), Positives = 123/204 (60%), Gaps = 4/204 (1%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
            E   +E E ++ +     + GIDEVGRG LAGPVV  A+IL+ ++  +G++DSKK+S  
Sbjct: 56  EEMTRYE-ENILSDNPEAVICGIDEVGRGPLAGPVVACAVILNADHAYYGLDDSKKVSAA 114

Query: 67  KREELYE-KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
            R++L E  I  +   +   A+ + ID  NI++AT  A+  A+ENL V P   LID   +
Sbjct: 115 NRQKLSEALIEKTTAYAYGIATPEEIDDLNIYQATQVAMMRAIENLNVTPTHLLIDAMEL 174

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  L     ++IKGD+ S+SIAAASI+AK  RD  MR   ++YP Y F+ +VGY T  H 
Sbjct: 175 P--LDIAQTSIIKGDAKSVSIAAASILAKEHRDTYMRQLAEQYPGYDFEHNVGYGTKAHL 232

Query: 186 QVIKEKGPSCIHRLTFRPLRNLSV 209
           + IK  G    HR +F P++++ +
Sbjct: 233 EGIKRLGIIPEHRKSFEPIKSIVL 256


>gi|327313027|ref|YP_004328464.1| ribonuclease HII [Prevotella denticola F0289]
 gi|326944091|gb|AEA19976.1| ribonuclease HII [Prevotella denticola F0289]
          Length = 200

 Score =  241 bits (616), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 70/179 (39%), Positives = 104/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL P      ++DSKK++ +KR  L + I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPPGYQNSLLDDSKKLTARKRYALRDTIEHDAVAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + ID+ NI  A+  A++ A++ L+V P + ++DG             +IKGD   LS
Sbjct: 73  VTPEEIDRINILNASFLAMHRALDQLKVRPEAVIVDGNRFTPYRKLPFATIIKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M    ++YP Y +  ++GYPT KH+Q I+E G +  HR ++  L
Sbjct: 133 IAAASILAKTYRDDYMCSLAEEYPQYDWQKNMGYPTKKHRQAIREYGITPYHRRSYNLL 191


>gi|150390501|ref|YP_001320550.1| ribonuclease H [Alkaliphilus metalliredigens QYMF]
 gi|189043609|sp|A6TRS3|RNH2_ALKMQ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|149950363|gb|ABR48891.1| Ribonuclease H [Alkaliphilus metalliredigens QYMF]
          Length = 204

 Score =  241 bits (616), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 82/198 (41%), Positives = 115/198 (58%), Gaps = 9/198 (4%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
             E+E  + E+    +AG DEVGRG L G V+ A +IL    +  G+ DSKK+S K+REE
Sbjct: 3   RLEIENQLWEEGYESIAGCDEVGRGCLFGSVLAATVILPKGLLIEGVKDSKKLSPKRREE 62

Query: 71  LYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENL------QVIPRSALIDGR 123
           LYE I  +AI   +   S + ID+ NI +A+  A+  +V +L        IP   L+D  
Sbjct: 63  LYEVIKKNAIAMGVGIISAEVIDQINIRQASRLAMKKSVLSLTTIDGESKIPDYILVDAE 122

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           +I  D+     A+IKGD  S  IAAASI+AKV RDRL     ++YP+YG   H GY T  
Sbjct: 123 NI--DIAIPQSAIIKGDDRSQGIAAASIVAKVIRDRLCIRWDEEYPNYGIAQHKGYGTKL 180

Query: 184 HQQVIKEKGPSCIHRLTF 201
           H++ + + GPS +HR +F
Sbjct: 181 HREALLKYGPSELHRRSF 198


>gi|241662957|ref|YP_002981317.1| ribonuclease HII [Ralstonia pickettii 12D]
 gi|309782124|ref|ZP_07676854.1| ribonuclease HII [Ralstonia sp. 5_7_47FAA]
 gi|240864984|gb|ACS62645.1| Ribonuclease H [Ralstonia pickettii 12D]
 gi|308919190|gb|EFP64857.1| ribonuclease HII [Ralstonia sp. 5_7_47FAA]
          Length = 232

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 80/205 (39%), Positives = 117/205 (57%), Gaps = 6/205 (2%)

Query: 7   PERPHFELEAMVREKNMWPV-AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           P++    L      K    +  G+DE GRG LAGPV  AA++L+P     G+ DSK ++ 
Sbjct: 8   PDQLGLLLSQEPAAKRARRILCGVDEAGRGPLAGPVTAAAVVLNPRKPIKGLADSKILTA 67

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAV---ENLQVIPRSALID 121
           KKRE LY++I   A+   ++ A+ + ID+ NI  AT+ A+  AV     L  +P    +D
Sbjct: 68  KKREALYDEIVEKALAWHVAEATVEEIDRINILHATMLAMQRAVHGVAALGTLPDLVQVD 127

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           G   P+ +     AV+KGD++  +I+AASI+AKVTRDR +   H ++P YGFD H GY T
Sbjct: 128 GNRCPQ-VAFAVEAVVKGDALVPAISAASILAKVTRDRQLAALHVEFPLYGFDVHAGYGT 186

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRN 206
            +H   I   G +  HR +F P+R 
Sbjct: 187 PQHLAAIDLHGVTPHHRRSFAPVRR 211


>gi|219669769|ref|YP_002460204.1| ribonuclease HII [Desulfitobacterium hafniense DCB-2]
 gi|254807972|sp|B8FRK8|RNH2_DESHD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|219540029|gb|ACL21768.1| Ribonuclease H [Desulfitobacterium hafniense DCB-2]
          Length = 260

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 86/196 (43%), Positives = 114/196 (58%), Gaps = 2/196 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  +       +AGIDE GRG LAGPVV A  IL       G+NDSKK++  KRE+L
Sbjct: 61  LREEKQLWLNGYLHIAGIDEAGRGPLAGPVVAATCILPAKFNLPGLNDSKKLTESKREKL 120

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +++I   AI  ++ SA    ID  NI +AT  A+  AVE L+V P   LID   +P  L 
Sbjct: 121 FQQIKEQAIGYAVGSAEPAEIDGLNILQATKLAMKRAVEGLKVRPHFLLIDALELP-SLK 179

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +I GD++S SIAAASI+AKV+RD LM    K YP+YGF  + GY T +H   ++ 
Sbjct: 180 IPQKGIIDGDALSASIAAASILAKVSRDHLMGELDKLYPEYGFAKNKGYGTREHLMALRR 239

Query: 191 KGPSCIHRLTFRPLRN 206
            G S IHR +F P++ 
Sbjct: 240 HGVSPIHRRSFAPVQQ 255


>gi|192358895|ref|YP_001981622.1| ribonuclease HII [Cellvibrio japonicus Ueda107]
 gi|190685060|gb|ACE82738.1| ribonuclease HII [Cellvibrio japonicus Ueda107]
          Length = 204

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 87/194 (44%), Positives = 122/194 (62%), Gaps = 2/194 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E  +       +AG DEVGRG LAG VV AA+ILDP     G++DSKK++ KKRE+L+
Sbjct: 3   QFEPFISVYQGHLLAGCDEVGRGPLAGDVVAAAVILDPGQSIIGLDDSKKLTEKKREQLF 62

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           ++I + A+   I+ AS + ID+ NI +A+L A+  AV+ L + P   L+DG  +P+    
Sbjct: 63  DEIRAKALSWCIARASVEEIDRLNILQASLLAMTRAVQGLAIQPEHVLVDGNKLPK-WHY 121

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
            A AV+KGDS   +I+AASI+AKVTRDR M      YP YGF  H GYPT  H   ++  
Sbjct: 122 SAEAVVKGDSRVAAISAASILAKVTRDREMVEMDSYYPGYGFAGHKGYPTKVHLDALERL 181

Query: 192 GPSCIHRLTFRPLR 205
           G S IHR ++ P++
Sbjct: 182 GVSPIHRSSYAPVK 195


>gi|16124634|ref|NP_419198.1| ribonuclease HII [Caulobacter crescentus CB15]
 gi|13421536|gb|AAK22366.1| ribonuclease HII [Caulobacter crescentus CB15]
          Length = 205

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 91/185 (49%), Positives = 111/185 (60%), Gaps = 2/185 (1%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
              PV G+DE GRG  AGPV   A+ILDP+ IP G+NDSKK+S K R  L E+I   AI 
Sbjct: 8   GQAPVCGVDEAGRGPWAGPVSAGAVILDPDRIPKGLNDSKKLSAKARAALEEEIKDVAIS 67

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             +  AS + I + NI  A   A+  AVE L V P  AL+DG      LPC    VIKGD
Sbjct: 68  WCVGLASIEEIAQLNILHAAGLAMRRAVEGLAVTPAFALVDGN-YAFKLPCPVKTVIKGD 126

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S+S SIAAASI+AK  RDR+M  A   YP YGF  H GY    H + ++  GPS IHRL 
Sbjct: 127 SLSCSIAAASILAKEARDRIMIEADALYPGYGFAGHKGYHAKVHVEGLRRLGPSPIHRLG 186

Query: 201 FRPLR 205
           + P++
Sbjct: 187 WAPVK 191


>gi|163856833|ref|YP_001631131.1| ribonuclease HII [Bordetella petrii DSM 12804]
 gi|163260561|emb|CAP42863.1| rnhB [Bordetella petrii]
          Length = 187

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 83/181 (45%), Positives = 111/181 (61%), Gaps = 2/181 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG LAG V  AA+ILDP     G+ DSK ++ ++REEL   I   A+   ++S
Sbjct: 2   AGVDEAGRGPLAGGVYAAAVILDPGRPVDGLADSKVLTAERREELAAHIQERALAWCVAS 61

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A+   ID  NI +ATL A+  AV+ L   P+ A++DG   P  L C    VIKGD++  +
Sbjct: 62  ATVLEIDTLNILRATLLAMQRAVDGLGQAPQVAMVDGNQAPT-LRCTVQTVIKGDALVPA 120

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AK  RD  ++  H  YP YGFD H GY TA H Q ++E GP   HR +F P+R
Sbjct: 121 ISAASILAKTARDADLQRLHALYPQYGFDQHKGYGTALHMQRLREHGPCPEHRRSFAPVR 180

Query: 206 N 206
            
Sbjct: 181 E 181


>gi|332878922|ref|ZP_08446637.1| ribonuclease HII [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332683273|gb|EGJ56155.1| ribonuclease HII [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 198

 Score =  241 bits (615), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 69/186 (37%), Positives = 105/186 (56%), Gaps = 3/186 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL P+     + DSK+++ K+R++L   I   A+  ++  
Sbjct: 12  AGTDEAGRGCLAGPVTAAAVILPPDFHNELLTDSKQLTEKQRDQLRPIIEREAVAYAVCH 71

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
                ID+ NI +A++ A++ A+  L V+P    +DG             V+KGD    +
Sbjct: 72  VLPAEIDELNILRASITAMHRAIAQLSVVPTFIAVDGNKFVRYAQIPYACVVKGDGKIQT 131

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR--P 203
           IAAASI+AK  RD  M     ++P+Y +  + GYPT +H++ I E G +  HR TF+  P
Sbjct: 132 IAAASILAKTYRDAYMSDLALQFPEYHWQQNKGYPTPEHRRAIAEYGATPHHRKTFQLLP 191

Query: 204 LRNLSV 209
           +  LS+
Sbjct: 192 VEQLSL 197


>gi|33592531|ref|NP_880175.1| ribonuclease HII [Bordetella pertussis Tohama I]
 gi|33596188|ref|NP_883831.1| ribonuclease HII [Bordetella parapertussis 12822]
 gi|33601596|ref|NP_889156.1| ribonuclease HII [Bordetella bronchiseptica RB50]
 gi|39932320|sp|Q7VYB6|RNH2_BORPE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|39932326|sp|Q7WA46|RNH2_BORPA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|39932331|sp|Q7WJ80|RNH2_BORBR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|33572177|emb|CAE41723.1| ribonuclease HII [Bordetella pertussis Tohama I]
 gi|33573191|emb|CAE36843.1| ribonuclease HII [Bordetella parapertussis]
 gi|33576032|emb|CAE33112.1| ribonuclease HII [Bordetella bronchiseptica RB50]
 gi|332381949|gb|AEE66796.1| ribonuclease HII [Bordetella pertussis CS]
          Length = 201

 Score =  241 bits (615), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 80/182 (43%), Positives = 113/182 (62%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DE GRG LAG V  AA+ILDP+    G+ DSK +  ++RE L  +I + A+   +
Sbjct: 16  IIAGVDEAGRGPLAGAVYAAAVILDPDRPVDGLADSKVLKAEQREALAVQIRAQALAWFV 75

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS Q ID  NI +AT+ A+  AV  L + P  A++DG   P+ L C    VIKGD++ 
Sbjct: 76  ASASVQEIDSLNILRATMLAMQRAVAGLAMAPELAMVDGNQAPK-LRCAVQTVIKGDALV 134

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AK  RD  +   H  YP YGFD H GY T +H  +++E GP   HR +F P
Sbjct: 135 PAISAASILAKTARDADLLRLHALYPQYGFDQHKGYGTPQHLSLLREHGPCPEHRRSFAP 194

Query: 204 LR 205
           ++
Sbjct: 195 IK 196


>gi|261364835|ref|ZP_05977718.1| ribonuclease HII [Neisseria mucosa ATCC 25996]
 gi|288566876|gb|EFC88436.1| ribonuclease HII [Neisseria mucosa ATCC 25996]
          Length = 196

 Score =  241 bits (615), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 77/184 (41%), Positives = 109/184 (59%), Gaps = 1/184 (0%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
            +AG+DE GRG L G V  AA+IL       G+ DSKK+S KKR+ L   I   A+    
Sbjct: 5   LLAGVDEAGRGPLVGSVFAAAVILPERYDLPGLTDSKKLSEKKRDTLAVLIKEQAVSWSV 64

Query: 85  SASH-QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +++  + I + NI  AT+ A+  AV+ L V+P   LIDG  +P+DL   A A++KGDS  
Sbjct: 65  ASASSEEIAELNILHATMLAMTRAVQGLVVVPDKVLIDGNRVPKDLGIPAEAIVKGDSKI 124

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           + I+AAS++AK  RD  M    ++YP YGFD H GY TA+H   +++ G    HR  F P
Sbjct: 125 IEISAASVLAKTARDAEMYALAERYPQYGFDQHKGYGTAQHLAALQKYGVLPEHRRDFAP 184

Query: 204 LRNL 207
           ++ L
Sbjct: 185 VKAL 188


>gi|297584021|ref|YP_003699801.1| ribonuclease H [Bacillus selenitireducens MLS10]
 gi|297142478|gb|ADH99235.1| Ribonuclease H [Bacillus selenitireducens MLS10]
          Length = 258

 Score =  241 bits (615), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 83/197 (42%), Positives = 114/197 (57%), Gaps = 5/197 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  +R      +AG+DEVGRG LAGPV  A +IL  +    G+ DSKK+S  KR    
Sbjct: 58  SFERSLRLSGYRLIAGVDEVGRGPLAGPVTAACVILPESPDLKGLTDSKKLSEAKRHFYA 117

Query: 73  EKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVI--PRSALIDGRSIPEDL 129
            +I   AI +    AS + ID+ NI++A+  A+  AV  +Q        LID  ++P DL
Sbjct: 118 AEIQKVAIAAETGEASPEEIDRLNIYEASKLAMRRAVAAVQQKTAIDFLLIDAMTLPIDL 177

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P    ++IKGD+ SLSIAAAS+IAKV RD  M+   + +P+YG  SH+GY T +H   + 
Sbjct: 178 P--QESLIKGDARSLSIAAASVIAKVERDNQMKELDRAFPEYGLASHMGYGTREHLAALD 235

Query: 190 EKGPSCIHRLTFRPLRN 206
           E GP   HR +F P+R 
Sbjct: 236 EHGPQFFHRKSFSPVRE 252


>gi|332981643|ref|YP_004463084.1| Ribonuclease H [Mahella australiensis 50-1 BON]
 gi|332699321|gb|AEE96262.1| Ribonuclease H [Mahella australiensis 50-1 BON]
          Length = 191

 Score =  241 bits (615), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 82/178 (46%), Positives = 113/178 (63%), Gaps = 2/178 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG LAGPV+ AA+IL       G+ DSKK++ K+R+ L++ I   A+ ++I
Sbjct: 5   YVAGVDEVGRGPLAGPVMAAAVILPAGLHIDGLRDSKKLTPKQRQYLHDIILDKALAVAI 64

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +S  H+ ID+ NI  A L+ +  AV +L + P   ++DGR    D+     AVI GD + 
Sbjct: 65  ASVDHERIDEINIRMAALEVMKQAVLSLSIQPDRVMVDGRDT-LDITIPQQAVIGGDDLV 123

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             I+AAS++AKVTRDRLM   H KYP Y F  + GY T KH + I+E G   IHR+TF
Sbjct: 124 ACISAASVVAKVTRDRLMVQYHDKYPQYDFIHNKGYGTQKHIEAIREYGICPIHRITF 181


>gi|158320503|ref|YP_001513010.1| ribonuclease H [Alkaliphilus oremlandii OhILAs]
 gi|189043610|sp|A8MHC7|RNH2_ALKOO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|158140702|gb|ABW19014.1| Ribonuclease H [Alkaliphilus oremlandii OhILAs]
          Length = 203

 Score =  241 bits (615), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 85/200 (42%), Positives = 120/200 (60%), Gaps = 9/200 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
            P  ++E+ +       +A  DEVGRG L G V+ AA+I+  + I  G+ DSKK+SHKKR
Sbjct: 1   MPTIDIESAIWNSGYENIACCDEVGRGCLFGSVLAAAVIMPKDVIIDGVKDSKKLSHKKR 60

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALID 121
           E+LYE I   ++ I + + S + IDK NI  AT  A+  A+ +L+      V P   LID
Sbjct: 61  EQLYEIIKEKSLAIGVGTVSSEIIDKINIKNATRLAMKKAILSLKDKDGNIVAPDYILID 120

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
              I  D+P    AVIKGD +   IAAASI+AKV RDRL +   +++P+YG   + GY T
Sbjct: 121 AEEI--DVPTPQSAVIKGDDLCHGIAAASIVAKVLRDRLCQRWEEEHPNYGIGQNKGYGT 178

Query: 182 AKHQQVIKEKGPSCIHRLTF 201
             H++ +KE GPS +HR +F
Sbjct: 179 KAHREALKEHGPSPMHRKSF 198


>gi|254414639|ref|ZP_05028404.1| ribonuclease HII [Microcoleus chthonoplastes PCC 7420]
 gi|196178487|gb|EDX73486.1| ribonuclease HII [Microcoleus chthonoplastes PCC 7420]
          Length = 211

 Score =  241 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 85/186 (45%), Positives = 118/186 (63%), Gaps = 5/186 (2%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI 80
            +AG+DEVGRGAL GPVV AA+IL  + +P     G+ DSK+++  +R++L ++I   A+
Sbjct: 21  LIAGVDEVGRGALFGPVVAAAVILPASTLPNLAGSGMKDSKQLTRLRRQKLAQEIQELAV 80

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             SI  A+   ID+ NI +A+L A+  AV  L+V P   LIDGR     LP    ++IKG
Sbjct: 81  DWSIGYATSTEIDQINILQASLLAMKRAVLKLKVQPDLCLIDGRQALVGLPVPQKSLIKG 140

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D  SL IAAASI+AKV RD L+     KYPDY   ++ GY T +H+  ++E GPS  HR 
Sbjct: 141 DQRSLEIAAASIVAKVWRDDLVGRLATKYPDYDLAANKGYGTERHRLALQEFGPSPQHRR 200

Query: 200 TFRPLR 205
           +FRP +
Sbjct: 201 SFRPCQ 206


>gi|229552204|ref|ZP_04440929.1| ribonuclease H [Lactobacillus rhamnosus LMS2-1]
 gi|258539618|ref|YP_003174117.1| ribonuclease HII [Lactobacillus rhamnosus Lc 705]
 gi|229314426|gb|EEN80399.1| ribonuclease H [Lactobacillus rhamnosus LMS2-1]
 gi|257151294|emb|CAR90266.1| Ribonuclease HII [Lactobacillus rhamnosus Lc 705]
          Length = 252

 Score =  241 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 85/194 (43%), Positives = 119/194 (61%), Gaps = 5/194 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  +       VAG+DEVGRG LAGPVV AA+IL P+   + +NDSK+++  +R+ LY
Sbjct: 58  RYERKLWTM-YSHVAGLDEVGRGPLAGPVVTAAVIL-PHQFKWPVNDSKQLTAHERDVLY 115

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I + AI + I  A +  ID+ NI+ AT  A+  AV +L+V P   L+D   +P +LP 
Sbjct: 116 PHILTEAIAVGIGVADNHEIDRENIYHATELAMAQAVSHLRVAPEFLLVDAMHVPVNLP- 174

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +IKGD+ S+SIAAASI+AKV RDRLM +  + YP Y F  ++GY T  H   +   
Sbjct: 175 -QERLIKGDANSISIAAASIVAKVIRDRLMVMYDQVYPGYDFKDNMGYGTKAHLAGLAAH 233

Query: 192 GPSCIHRLTFRPLR 205
           G + IHR +F P+R
Sbjct: 234 GVTPIHRRSFGPVR 247


>gi|256819586|ref|YP_003140865.1| ribonuclease HII [Capnocytophaga ochracea DSM 7271]
 gi|256581169|gb|ACU92304.1| Ribonuclease H [Capnocytophaga ochracea DSM 7271]
          Length = 198

 Score =  241 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 69/186 (37%), Positives = 103/186 (55%), Gaps = 3/186 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL P+     + DSK+++ K+R  L   I S A+  ++  
Sbjct: 12  AGTDEAGRGCLAGPVTAAAVILPPDFKNDLLTDSKQLTEKQRNLLRPIIESEAVAYAVCH 71

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
                ID+ NI +A++ A++ A+  L   P    +DG             V+KGD    +
Sbjct: 72  VLPAEIDELNILRASITAMHRAIAQLSPTPEFIAVDGNKFVPYQKIPYACVVKGDGKIQT 131

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR--P 203
           IAAASI+AK  RD  M    +++P+Y +  + GYPT +H++ I E G +  HR TF+  P
Sbjct: 132 IAAASILAKTYRDAYMEDLAQQFPEYHWQQNKGYPTPEHRKAIAEYGATEHHRKTFQLLP 191

Query: 204 LRNLSV 209
           +  LS+
Sbjct: 192 VEQLSL 197


>gi|332519701|ref|ZP_08396165.1| Ribonuclease H [Lacinutrix algicola 5H-3-7-4]
 gi|332044260|gb|EGI80454.1| Ribonuclease H [Lacinutrix algicola 5H-3-7-4]
          Length = 199

 Score =  240 bits (614), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 73/195 (37%), Positives = 102/195 (52%), Gaps = 12/195 (6%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            FE E            G DE GRG LAGPV  AA+IL        +NDSKK+S  KRE 
Sbjct: 8   SFEFE-----------CGTDEAGRGCLAGPVTAAAVILPKKFKNNILNDSKKLSKGKREL 56

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L   I + AI  + +      ID+ NI  A++ A+  ++  L   P   ++DG       
Sbjct: 57  LKPIIENEAICYAFTHVYENEIDEINILNASILAMQRSILELNPKPEFIIVDGNRFKPLN 116

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                 +IKGDS  LSIAAAS++AK  RD  M   H+++P Y +  + GYPT +H++ I+
Sbjct: 117 NIPFETIIKGDSKYLSIAAASVLAKTYRDAYMLKIHEEFPMYNWKKNKGYPTKEHREAIR 176

Query: 190 EKGPSCIHRLTFRPL 204
           + G +  HR +FR L
Sbjct: 177 KYGITKYHRKSFRLL 191


>gi|187928381|ref|YP_001898868.1| ribonuclease HII [Ralstonia pickettii 12J]
 gi|238691815|sp|B2UBB5|RNH2_RALPJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|187725271|gb|ACD26436.1| Ribonuclease H [Ralstonia pickettii 12J]
          Length = 232

 Score =  240 bits (614), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 78/205 (38%), Positives = 118/205 (57%), Gaps = 6/205 (2%)

Query: 7   PERPHFELEAMVREKNMWPV-AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           P++    L      K    +  G+DE GRG LAGPV  AA++L+P     G+ DSK ++ 
Sbjct: 8   PDQLGLLLSQEPAAKRARRILCGVDEAGRGPLAGPVTAAAVVLNPRKPIKGLADSKILTA 67

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVEN---LQVIPRSALID 121
           +KRE LY++I   A+   ++ A+ + ID+ NI  AT+ A+  AV+    L  +P    +D
Sbjct: 68  RKREALYDEIVEKALAWHVAEATVEEIDRINILHATMLAMQRAVQGVAALGTLPDLVQVD 127

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           G   P+ +     A++KGD++  +I+AASI+AKVTRDR +   H ++P YGFD H GY T
Sbjct: 128 GNRCPQ-VAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIEFPLYGFDVHAGYGT 186

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRN 206
            +H   I   G +  HR +F P+R 
Sbjct: 187 PQHLAAIDLHGVTPHHRRSFAPVRR 211


>gi|191638395|ref|YP_001987561.1| ribonuclease HII [Lactobacillus casei BL23]
 gi|238693037|sp|B3WEA2|RNH2_LACCB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|190712697|emb|CAQ66703.1| Ribonuclease HII (RNase HII) [Lactobacillus casei BL23]
 gi|327382424|gb|AEA53900.1| hypothetical protein LC2W_1567 [Lactobacillus casei LC2W]
 gi|327385624|gb|AEA57098.1| hypothetical protein LCBD_1601 [Lactobacillus casei BD-II]
          Length = 252

 Score =  240 bits (614), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 86/195 (44%), Positives = 120/195 (61%), Gaps = 5/195 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  +       VAG+DEVGRG LAGPVV AA+IL  +   + +NDSK+++  +R  LY
Sbjct: 58  RYERQLWGT-YEYVAGLDEVGRGPLAGPVVTAAVILPHHF-QWPVNDSKQLTAHERNVLY 115

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I + AI + I  A ++ ID+ NI+ AT  A+  AV++L+V P   L+D   +P DLP 
Sbjct: 116 PHILTEAIAVGIGVADNRTIDRENIYHATELAMAQAVDHLRVAPECLLVDAMHVPVDLP- 174

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +IKGD+ S+SIAAASI+AKV RDRLM +  K YP Y F  ++GY T  H   +   
Sbjct: 175 -QKRLIKGDANSISIAAASIVAKVIRDRLMMMYDKIYPGYDFKDNMGYGTKAHLAGLAAH 233

Query: 192 GPSCIHRLTFRPLRN 206
           G + IHR +F P+R+
Sbjct: 234 GVTPIHRRSFGPVRD 248


>gi|78485616|ref|YP_391541.1| ribonuclease H [Thiomicrospira crunogena XCL-2]
 gi|97189437|sp|Q31G56|RNH2_THICR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|78363902|gb|ABB41867.1| RNase HII [Thiomicrospira crunogena XCL-2]
          Length = 207

 Score =  240 bits (614), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 78/184 (42%), Positives = 113/184 (61%), Gaps = 3/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            + G+DEVGRG L G VV AA+IL        + DSKK+S  KRE +  +I   AI   I
Sbjct: 19  FIVGVDEVGRGPLVGDVVAAAVILPKGCELL-LKDSKKLSESKRELIAHQIQQEAIDFCI 77

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           ++AS   ID  NI  AT+ A+  AVE L    +  L+DG   P ++P +  A++KGD   
Sbjct: 78  ATASPDEIDSLNILHATMLAMKRAVEGLNNPIKKVLVDGNRCP-NVPYECEAIVKGDGKV 136

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKV RD+ M++ H+ YP+YGFD+H GYPT  H + + + G    +R +F+P
Sbjct: 137 PVISAASILAKVHRDQQMQVLHEAYPEYGFDAHKGYPTKLHLEKLSQHGLIPGYRRSFKP 196

Query: 204 LRNL 207
           ++N+
Sbjct: 197 VKNI 200


>gi|152995315|ref|YP_001340150.1| ribonuclease H [Marinomonas sp. MWYL1]
 gi|189043694|sp|A6VUT6|RNH2_MARMS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|150836239|gb|ABR70215.1| Ribonuclease H [Marinomonas sp. MWYL1]
          Length = 199

 Score =  240 bits (614), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 88/184 (47%), Positives = 121/184 (65%), Gaps = 1/184 (0%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG DE GRG LAG VV AA+ILDP     G+ DSKK+S KKRE L+ +I   A+   I
Sbjct: 13  LLAGTDEAGRGPLAGEVVAAAVILDPAQPITGLADSKKLSEKKREALFVEIQEKALAYGI 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A+ + ID+ NI  A++ A+  AV  L + P   L+DG  IP +LPC A AV+KGD+  
Sbjct: 73  ARATIEEIDELNILHASMLAMSRAVALLSIEPEYVLVDGNRIPPNLPCSAEAVVKGDARH 132

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AKVTRDR +    + YP+YGF+ H GYPTA H + I+  G + IHR +F P
Sbjct: 133 AAISAASILAKVTRDRDIVQVAQIYPEYGFEKHKGYPTALHLEAIRLHGITPIHRRSFGP 192

Query: 204 LRNL 207
           ++ +
Sbjct: 193 VKKI 196


>gi|294661258|ref|YP_003573134.1| hypothetical protein Aasi_1724 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|227336409|gb|ACP21006.1| hypothetical protein Aasi_1724 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 196

 Score =  240 bits (614), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 78/182 (42%), Positives = 104/182 (57%), Gaps = 1/182 (0%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG DEVGRG LAGPVV AA+IL      F + DSKK++ K+R E+   I   AI  +
Sbjct: 7   QLVAGCDEVGRGCLAGPVVAAAVILPLQYYYFLLKDSKKLTPKQRIEIAAIIKKEAIDWA 66

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I  A+ + ID+ NI  AT  A++ A+  L V P   LIDG         +   ++KGD  
Sbjct: 67  IGCATPEEIDQVNISNATHLAMHRAINKLIVKPELLLIDGNKFLPYPNIEHECIVKGDKK 126

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             SIAAASII KV RD  M+   ++ P Y ++ ++GYPT +H Q I E G S  HR +F 
Sbjct: 127 VNSIAAASIIDKVYRDEYMQELAEREPGYNWEINMGYPTKEHYQAIYELGMSFHHRKSFS 186

Query: 203 PL 204
            +
Sbjct: 187 LV 188


>gi|301103372|ref|XP_002900772.1| ribonuclease HII [Phytophthora infestans T30-4]
 gi|262101527|gb|EEY59579.1| ribonuclease HII [Phytophthora infestans T30-4]
          Length = 249

 Score =  240 bits (613), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 89/199 (44%), Positives = 112/199 (56%), Gaps = 7/199 (3%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E     K    V G+DE GRG LAGPVV AA  +  +    GI+DSKKI   +RE L+E
Sbjct: 35  FETRYEAKGYTTVIGVDEAGRGPLAGPVVAAACHVPLDVTIAGIDDSKKILEPQREALFE 94

Query: 74  KITSSA--IISISSASHQYIDKHNIHKATLDAIYHAVENLQVI-----PRSALIDGRSIP 126
            +TS      ++   S Q ID  NI +A+L+++  +V  +            L+DG  +P
Sbjct: 95  LLTSHPNITYAVHVNSPQRIDDINILQASLESMTKSVNEVAQQLQQKDKTFVLVDGNKLP 154

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             L   A AV+KGDS   SIAAASIIAKVTRDRLMR    K+P YG   H GYPT  H  
Sbjct: 155 PTLELPAEAVVKGDSKVYSIAAASIIAKVTRDRLMREYDVKFPQYGLAQHKGYPTRDHVA 214

Query: 187 VIKEKGPSCIHRLTFRPLR 205
            I + GP  IHR+TF PL+
Sbjct: 215 AIAKHGPCEIHRMTFAPLK 233


>gi|239631517|ref|ZP_04674548.1| ribonuclease HII [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239525982|gb|EEQ64983.1| ribonuclease HII [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 252

 Score =  240 bits (613), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 86/195 (44%), Positives = 121/195 (62%), Gaps = 5/195 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  +       VAG+DEVGRG LAGPVV AA+IL  +   + +NDSK+++  +R  LY
Sbjct: 58  RYERQLWGT-YEYVAGLDEVGRGPLAGPVVTAAVILPHHF-QWPVNDSKQLTAHERNVLY 115

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I + AI + I  A ++ ID+ NI+ AT  A+  AV++L+V P   L+D   +P DLP 
Sbjct: 116 PHILTEAIAVGIGVADNRTIDRENIYHATELAMAQAVDHLRVAPECLLVDAMHVPVDLP- 174

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +IKGD+ S+SIAAASI+AKV RDRLM++  K YP Y F  ++GY T  H   +   
Sbjct: 175 -QKRLIKGDANSISIAAASIVAKVIRDRLMKMYDKIYPGYDFKDNMGYGTKAHLAGLAAH 233

Query: 192 GPSCIHRLTFRPLRN 206
           G + IHR +F P+R+
Sbjct: 234 GVTPIHRRSFGPVRD 248


>gi|260591769|ref|ZP_05857227.1| ribonuclease HII [Prevotella veroralis F0319]
 gi|260536053|gb|EEX18670.1| ribonuclease HII [Prevotella veroralis F0319]
          Length = 200

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 73/179 (40%), Positives = 105/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  N     +NDSKK+S KKR  L + I   AI  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPTNYKNDLLNDSKKLSAKKRYALRKIIEHDAIAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + IDK NI  A+  A++ A++ L++ P + ++DG             ++KGD   LS
Sbjct: 73  VTPEEIDKINILNASFLAMHRALDQLKMRPEAIIVDGNRFTPYQDLPFTTIVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M    +KYP Y + S++GYPT KH++ I++ G +  HR ++  L
Sbjct: 133 IAAASILAKTYRDDYMLSLAEKYPQYDWQSNMGYPTKKHREAIRQYGITPFHRKSYNLL 191


>gi|82701801|ref|YP_411367.1| ribonuclease H [Nitrosospira multiformis ATCC 25196]
 gi|97189026|sp|Q2YB96|RNH2_NITMU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|82409866|gb|ABB73975.1| RNase HII [Nitrosospira multiformis ATCC 25196]
          Length = 199

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 78/189 (41%), Positives = 108/189 (57%), Gaps = 2/189 (1%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
                 V G+DE GRG LAGPV  A +ILDP +   G+ DSK ++  KR  L   I + +
Sbjct: 3   SNEYPWVCGVDEAGRGPLAGPVFAACVILDPASPIDGLADSKTLTEGKRNSLTLAIKAYS 62

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           I  +I  AS + ID+ NI +A+L A+  A+  L V P   L+DG   P  L      +++
Sbjct: 63  IAWAIGFASVREIDRLNILQASLLAMKRAIGKLPVTPARVLVDGNHSPR-LKFPVTTIVR 121

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GDS+   I+AASI+AK  RD  M   H+++P YGFD H GY T +H   +K  G S +HR
Sbjct: 122 GDSLVPEISAASILAKTARDAEMMALHRRFPRYGFDQHKGYSTEQHLAALKIHGVSIVHR 181

Query: 199 LTFRPLRNL 207
            +F P+R L
Sbjct: 182 RSFAPVREL 190


>gi|168061299|ref|XP_001782627.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665860|gb|EDQ52530.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 655

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 86/238 (36%), Positives = 114/238 (47%), Gaps = 36/238 (15%)

Query: 4   NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIND---- 59
            S+ + P  +LE  + E     VAG+DE GRG LAGPVV AA I+  +    G       
Sbjct: 411 KSLKKFPSRDLEMKLWELGFRNVAGVDEAGRGPLAGPVVAAACIIPASATIPGKICFCVS 470

Query: 60  --SKKISHKKREELYEKITSSAIIS------------------------ISSASHQYIDK 93
             S + S   +EE Y ++   A                           I       ID+
Sbjct: 471 QWSCRASGPCQEEPYVRLNGVAQWKETFTVHHLWMSRELWCSWFRVAGQIHVVDAAKIDE 530

Query: 94  HNIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL-PCQAFAVIKGDSISLSIA 147
            NI +ATL A+   V+ L        P   LIDG  IP++L   +A  VIKGD+    IA
Sbjct: 531 INILQATLLAMSTCVKKLRKERGGEAPDYILIDGNRIPDELSKEEAQFVIKGDAECHVIA 590

Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           AASI+AKVTRDR+M    +++P YGF +H GY TA H   +   GP  IHR +F PL+
Sbjct: 591 AASILAKVTRDRMMVDYDRRWPVYGFKAHKGYGTAAHIGALLNHGPCDIHRRSFAPLK 648


>gi|188994631|ref|YP_001928883.1| ribonuclease HII [Porphyromonas gingivalis ATCC 33277]
 gi|238691470|sp|B2RIU1|RNH2_PORG3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|188594311|dbj|BAG33286.1| putative ribonuclease HII [Porphyromonas gingivalis ATCC 33277]
          Length = 201

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 75/179 (41%), Positives = 100/179 (55%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
            G DE GRG LAGPV  AA+IL  +     +NDSK++S K+R  L   I S AI   I  
Sbjct: 14  CGCDEAGRGCLAGPVYAAAVILPADFSHPLLNDSKQLSEKQRYTLRPVIESEAIGWGIGI 73

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S Q ID+ NI +A+  A++ A+E L   P   LIDG             ++ GD+   S
Sbjct: 74  VSPQEIDEINILRASFLAMHRAIEQLPFRPERLLIDGNRFDPFEQIPHHCIVGGDARYRS 133

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   +K +P YG++ + GYP+  H+  I+  G S  HRLTFR +
Sbjct: 134 IAAASILAKTYRDDSMLRLNKDFPMYGWERNKGYPSPAHKSAIRRFGVSPHHRLTFRGV 192


>gi|298372107|ref|ZP_06982097.1| ribonuclease HII [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275011|gb|EFI16562.1| ribonuclease HII [Bacteroidetes oral taxon 274 str. F0058]
          Length = 207

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 72/179 (40%), Positives = 110/179 (61%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA++L  +     +NDSK+++ K+R+ +   I  +A+  +++ 
Sbjct: 19  AGCDEAGRGCLAGPVFAAAVVLSADFECPHLNDSKQLTEKQRQNIRLVIEQNALAWAVAR 78

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
              + ID  NI KA++  ++ A++NL +IP   +IDG    +    +   ++KGD   LS
Sbjct: 79  IDAEEIDNINILKASILCMHKALDNLSIIPEHIIIDGNKFIQYRDVEYKTIVKGDGKYLS 138

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAAS++AK  RD  M   H +YP Y ++ + GYPT+KH+Q IKE G S  HR +F+ L
Sbjct: 139 IAAASVLAKTHRDDYMSYLHLQYPHYQWNINKGYPTSKHRQAIKEFGISPYHRRSFKLL 197


>gi|227535118|ref|ZP_03965167.1| ribonuclease HII [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227187259|gb|EEI67326.1| ribonuclease HII [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 252

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 86/195 (44%), Positives = 120/195 (61%), Gaps = 5/195 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  +       VAG+DEVGRG LAGPVV AA+IL  +   + +NDSK+++  +R  LY
Sbjct: 58  RYERQLWGT-YEYVAGLDEVGRGPLAGPVVTAAVILPHHF-QWPVNDSKQLTAHERNVLY 115

Query: 73  EKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I + AI+  I  A ++ ID+ NI+ AT  A+  AV++L+V P   L+D   +P DLP 
Sbjct: 116 PHILTEAIVVGIGVADNRTIDRENIYHATELAMAQAVDHLRVAPECLLVDAMHVPVDLP- 174

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +IKGD+ S+SIAAASI+AKV RDRLM +  K YP Y F  ++GY T  H   +   
Sbjct: 175 -QKRLIKGDANSISIAAASIVAKVIRDRLMMMYDKIYPGYDFKDNMGYGTKAHLAGLAAH 233

Query: 192 GPSCIHRLTFRPLRN 206
           G + IHR +F P+R+
Sbjct: 234 GVTPIHRRSFGPVRD 248


>gi|78224061|ref|YP_385808.1| ribonuclease HII [Geobacter metallireducens GS-15]
 gi|97182538|sp|Q39RP1|RNH2_GEOMG RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|78195316|gb|ABB33083.1| RNase HII [Geobacter metallireducens GS-15]
          Length = 213

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 96/207 (46%), Positives = 124/207 (59%), Gaps = 4/207 (1%)

Query: 2   FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61
             + I ER  +  E +V       VAG+DE GRG LAGPVV AA+IL       G++DSK
Sbjct: 5   LFDDIGERSLWTFENLVSRNGFHAVAGVDEAGRGPLAGPVVAAAVILPQGAELPGVDDSK 64

Query: 62  KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K+S  KRE L+  I+  A+ + +  A H  ID+ NI +ATL A+  AV  L V P   LI
Sbjct: 65  KLSAPKREHLFGLISGCALAVGVGVADHACIDRINILQATLRAMAEAVGQLAVPPDYLLI 124

Query: 121 DGR-SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           DG  +IP +LP     + KGDS S+SIA+ASI+AKVTRDR+M    +++P YGF  H GY
Sbjct: 125 DGISTIPLNLP--QKTIKKGDSSSISIASASIVAKVTRDRMMMEYDQQFPGYGFAEHKGY 182

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRN 206
             A H   I E GP  IHR TFR ++ 
Sbjct: 183 GCASHLAAIAELGPCPIHRKTFRGVKE 209


>gi|325299103|ref|YP_004259020.1| Ribonuclease H [Bacteroides salanitronis DSM 18170]
 gi|324318656|gb|ADY36547.1| Ribonuclease H [Bacteroides salanitronis DSM 18170]
          Length = 200

 Score =  239 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 75/179 (41%), Positives = 101/179 (56%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL        +NDSKK++ ++R +L   I S A+  ++  
Sbjct: 13  AGCDEAGRGCLAGAVYAAAVILPSGYQNELLNDSKKLTERQRYKLRNIIESDALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S   ID+ NI  A+  A++ AVE L V P+  LIDG             V+KGD   LS
Sbjct: 73  VSPAEIDQINILNASFLAMHRAVEQLAVRPQHLLIDGNRFNPYPGIPHTTVVKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H +YP Y +  + GYPT KH++ I+  G +  HR++F  L
Sbjct: 133 IAAASILAKTYRDDYMNCLHDEYPLYDWKGNKGYPTRKHREAIRLYGTTPYHRMSFNLL 191


>gi|306821648|ref|ZP_07455246.1| ribonuclease HII [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304550393|gb|EFM38386.1| ribonuclease HII [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 263

 Score =  239 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 90/198 (45%), Positives = 120/198 (60%), Gaps = 4/198 (2%)

Query: 12  FELEAMVRE-KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           +E E  +RE +N   +  IDEVGRG LAGP+VV  ++LD N     ++DSKK+S KKR+E
Sbjct: 67  YEYEKNIRESENKQNILCIDEVGRGPLAGPLVVCGVMLDENPEILYVDDSKKLSEKKRKE 126

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           ++E+I    I   I +     ID+ NI  AT  A+ H  +N  V     L+DG  I +D+
Sbjct: 127 IFEQIMQKNIRYEIMTVEVDKIDELNIFNATYRAMSHIAKNFPVKIDHILVDGNQILKDV 186

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                AVIKGDS  L IA ASIIAKVTRD +M    K YP Y F S+ GY T+KH + IK
Sbjct: 187 NIDQTAVIKGDSKVLGIAIASIIAKVTRDAMMIDYDKIYPMYDFASNKGYGTSKHIEGIK 246

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + G   IHR++F  L+N+
Sbjct: 247 KYGTCPIHRMSF--LKNI 262


>gi|295696077|ref|YP_003589315.1| Ribonuclease H [Bacillus tusciae DSM 2912]
 gi|295411679|gb|ADG06171.1| Ribonuclease H [Bacillus tusciae DSM 2912]
          Length = 240

 Score =  239 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 85/203 (41%), Positives = 125/203 (61%), Gaps = 5/203 (2%)

Query: 6   IPERP---HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62
           IP RP    +  E     K    +AG+DE G G LAGPVV AA++L  +    G+ DSK+
Sbjct: 9   IPTRPPGLGWNWEQYWWTKGYSRIAGVDEAGVGPLAGPVVAAAVVLPKDFDVAGLGDSKR 68

Query: 63  ISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           ++ ++REE ++++   A+   ++      ID+ NI +A   A+  AV  L     + L+D
Sbjct: 69  LTARQREEQFKRLRRDAVALEVAVVDADLIDRLNILQAARLAMRRAVAALGERCEAVLVD 128

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           GR++P D+P  + AV++GD+ S SIAAASI+AKVTRDRLM    ++YP YGF+ H GYPT
Sbjct: 129 GRTVP-DMPAPSLAVVRGDAQSPSIAAASIVAKVTRDRLMVEYGQRYPGYGFERHKGYPT 187

Query: 182 AKHQQVIKEKGPSCIHRLTFRPL 204
           A H + ++  GP  IHR +F P+
Sbjct: 188 AAHLEALERLGPCPIHRRSFGPV 210


>gi|167648321|ref|YP_001685984.1| ribonuclease HII [Caulobacter sp. K31]
 gi|189043575|sp|B0SZF7|RNH2_CAUSK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|167350751|gb|ABZ73486.1| Ribonuclease H [Caulobacter sp. K31]
          Length = 230

 Score =  239 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 90/197 (45%), Positives = 118/197 (59%), Gaps = 5/197 (2%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P   LEA         V G+DE GRG  AGPV  AA+ILDP+ +P G++DSKK+S K R 
Sbjct: 19  PDMMLEAAC---GPGLVCGVDEAGRGPWAGPVSAAAVILDPSRVPKGLDDSKKLSAKARA 75

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            L  +I   A+   +  AS + I++ NI  A   A+  A++ L V P  AL+DG    E 
Sbjct: 76  VLEIEIKQVAVAWCVGLASIEEIEELNILHAAGLAMCRAIDGLSVKPDIALVDGNYRFE- 134

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LPC    VIKGDS+S SIAAASI+AK  RDR+M      +P YGF SH GY  A H + +
Sbjct: 135 LPCPIKTVIKGDSLSCSIAAASILAKEARDRIMVEMDALHPGYGFASHKGYHAAIHVEGL 194

Query: 189 KEKGPSCIHRLTFRPLR 205
           +  GPS IHRL++ P++
Sbjct: 195 RRLGPSPIHRLSWAPVK 211


>gi|149371924|ref|ZP_01891243.1| ribonuclease HII [unidentified eubacterium SCB49]
 gi|149355064|gb|EDM43625.1| ribonuclease HII [unidentified eubacterium SCB49]
          Length = 199

 Score =  239 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 76/179 (42%), Positives = 101/179 (56%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
            G DE GRG L+GPV  AA+IL  N     + DSK++SHKKR EL   I  +AI   +  
Sbjct: 13  CGTDEAGRGCLSGPVTAAAVILPDNFSHPWLTDSKQLSHKKRMELKPIIEEAAISYGVCH 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
                IDK NI  A++ A++ +++ L   P+   IDG             VIKGD   L 
Sbjct: 73  VMMDEIDKINILNASILAMHRSIDKLTTAPQFIAIDGNRFKPYAEIPYECVIKGDGKFLH 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M+  H+K+P Y +  + GYPT +H+  I+E GPS  HR +FR L
Sbjct: 133 IAAASILAKTHRDLYMQELHEKFPMYNWQKNKGYPTKEHRAAIREHGPSPYHRKSFRLL 191


>gi|288925319|ref|ZP_06419253.1| ribonuclease HII [Prevotella buccae D17]
 gi|315606714|ref|ZP_07881724.1| ribonuclease HII [Prevotella buccae ATCC 33574]
 gi|288337790|gb|EFC76142.1| ribonuclease HII [Prevotella buccae D17]
 gi|315251569|gb|EFU31548.1| ribonuclease HII [Prevotella buccae ATCC 33574]
          Length = 201

 Score =  239 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 71/179 (39%), Positives = 106/179 (59%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK++SHK+R EL E+I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPRDYNNPALNDSKQLSHKRRNELREQIMHDAVAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + ID+ NI KA+  A++ A++ L V P + ++DG            A++KGD    S
Sbjct: 73  VTPEEIDRINILKASFLAMHRALDALNVRPEAVIVDGNRFVPYGDLPYTAIVKGDGKYQS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M    ++YP Y ++ ++GYPT KH++ I+  G    HR ++  L
Sbjct: 133 IAAASILAKTFRDDYMCDLARRYPYYDWEHNMGYPTKKHREGIRLHGICPYHRKSYNLL 191


>gi|116494884|ref|YP_806618.1| ribonuclease HII [Lactobacillus casei ATCC 334]
 gi|301066445|ref|YP_003788468.1| ribonuclease HII [Lactobacillus casei str. Zhang]
 gi|122263698|sp|Q039E6|RNH2_LACC3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|116105034|gb|ABJ70176.1| RNase HII [Lactobacillus casei ATCC 334]
 gi|300438852|gb|ADK18618.1| Ribonuclease HII [Lactobacillus casei str. Zhang]
          Length = 252

 Score =  239 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 86/195 (44%), Positives = 120/195 (61%), Gaps = 5/195 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  +       VAG+DEVGRG LAGPVV AA+IL  +   + +NDSK+++  +R  LY
Sbjct: 58  RYERQLWGT-YEYVAGLDEVGRGPLAGPVVTAAVILPHHF-QWPVNDSKQLTAHERNVLY 115

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I + AI + I  A ++ ID+ NI+ AT  A+  AV++L+V P   L+D   +P DLP 
Sbjct: 116 PHILTEAIAVGIGVADNRTIDRENIYHATELAMAQAVDHLRVAPECLLVDAMHVPVDLP- 174

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +IKGD+ S+SIAAASI+AKV RDRLM +  K YP Y F  ++GY T  H   +   
Sbjct: 175 -QKRLIKGDANSISIAAASIVAKVIRDRLMMMYDKIYPGYDFKDNMGYGTKAHLAGLAAH 233

Query: 192 GPSCIHRLTFRPLRN 206
           G + IHR +F P+R+
Sbjct: 234 GVTPIHRRSFGPVRD 248


>gi|239636276|ref|ZP_04677278.1| putative ribonuclease HII [Staphylococcus warneri L37603]
 gi|239597631|gb|EEQ80126.1| putative ribonuclease HII [Staphylococcus warneri L37603]
          Length = 256

 Score =  239 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 77/191 (40%), Positives = 116/191 (60%), Gaps = 3/191 (1%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77
           + + N   + GIDEVGRG LAGPVV  A+IL+P +   G+NDSKK+S K R  L +++  
Sbjct: 66  LAQNNKAIICGIDEVGRGPLAGPVVTCAVILNPGHRYLGLNDSKKVSAKNRVILNQQLKE 125

Query: 78  -SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136
                +   A+   ID+ NI++AT  A+  A++ L + P   LID  ++  ++     ++
Sbjct: 126 GVTDYAYGIATSAEIDEMNIYQATRLAMQRAIDQLNIRPTQLLIDAMTLDNEIS--QTSI 183

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           IKGD+ S+SIAAASI+AK  RD  M+   K+YP Y F+ +VGY T  H + I + G    
Sbjct: 184 IKGDAKSVSIAAASIMAKEYRDHYMKELAKQYPGYDFEKNVGYGTKAHLEGIAQNGVISE 243

Query: 197 HRLTFRPLRNL 207
           HR TF P++++
Sbjct: 244 HRKTFEPIKSI 254


>gi|255657930|ref|ZP_05403339.1| ribonuclease HII [Mitsuokella multacida DSM 20544]
 gi|260850123|gb|EEX70130.1| ribonuclease HII [Mitsuokella multacida DSM 20544]
          Length = 259

 Score =  239 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 92/198 (46%), Positives = 130/198 (65%), Gaps = 2/198 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +  E     +    VAG+DE GRG LAGPV VAA+IL  +     +NDSKK+S K REEL
Sbjct: 58  YAYEHAAWARGHEIVAGVDEAGRGPLAGPVSVAAVILPHDLCLPKLNDSKKLSAKVREEL 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +++I   AI +  +    Q ID+ NI++AT++ +Y A+ +LQ  P+  LID   + + LP
Sbjct: 118 FDEIQEKAIAVGTALIDAQTIDRVNIYQATINGMYEAIFSLQPAPQEVLIDAVPL-DRLP 176

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             + ++IKGD+ S SI+AASIIAKVTRDRLM    K YP+YGF  H GY TA+H + +K+
Sbjct: 177 MPSESIIKGDAKSASISAASIIAKVTRDRLMDEYDKIYPEYGFAQHKGYGTAQHIEALKK 236

Query: 191 KGPSCIHRLTFRPLRNLS 208
            GP  IHR +F P+R+++
Sbjct: 237 YGPCPIHRRSFEPVRSIA 254


>gi|88801501|ref|ZP_01117029.1| ribonuclease HII [Polaribacter irgensii 23-P]
 gi|88782159|gb|EAR13336.1| ribonuclease HII [Polaribacter irgensii 23-P]
          Length = 196

 Score =  239 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 70/188 (37%), Positives = 106/188 (56%), Gaps = 1/188 (0%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77
           +        AG DE GRG L GPVV AA+IL  +     +NDSK +S KKRE +   I  
Sbjct: 4   LNYSGFSLEAGTDEAGRGCLCGPVVAAAVILSKDFTHPFLNDSKLLSEKKREAVRPFIEE 63

Query: 78  SAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136
           +A+  S+S    Q +D+ N+ +A+++ ++ A+  L++ P   ++DG    +        +
Sbjct: 64  NALAFSVSFIWQQEVDEINVLQASIEGMHRAIAGLKITPEFIIVDGNKFRDYKEIPHQTI 123

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           +KGDS  LSIAAAS++AK  RD  M   H ++P Y +  + GYPT +H+  I+  G +  
Sbjct: 124 VKGDSKYLSIAAASVLAKTYRDDYMAKIHLEFPMYNWAKNKGYPTKEHRNAIRNFGATEY 183

Query: 197 HRLTFRPL 204
           HR TFR L
Sbjct: 184 HRKTFRLL 191


>gi|15827847|ref|NP_302110.1| ribonuclease HII [Mycobacterium leprae TN]
 gi|221230324|ref|YP_002503740.1| ribonuclease HII [Mycobacterium leprae Br4923]
 gi|7227915|sp|O33022|RNH2_MYCLE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807982|sp|B8ZRW3|RNH2_MYCLB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|2251163|emb|CAB10634.1| ribonuclease HII [Mycobacterium leprae]
 gi|13093399|emb|CAC30562.1| ribonuclease HII [Mycobacterium leprae]
 gi|219933431|emb|CAR71706.1| ribonuclease HII [Mycobacterium leprae Br4923]
          Length = 240

 Score =  239 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 79/200 (39%), Positives = 113/200 (56%), Gaps = 2/200 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           R  + LE  ++   + PVAG+DEVGRGA AGP+VVAA +L P  +   ++DSKK+S K R
Sbjct: 18  RGMWTLEYELQRSGLGPVAGVDEVGRGACAGPLVVAACVLGPGRLEESLDDSKKLSAKGR 77

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E L+  I   A+   +       +D+H +  A ++ +  AV  L V P   L DG  +P 
Sbjct: 78  EMLFPLICRYALAYHVVFIPSVEVDRHGVQVANIEGMRRAVAGLSVRPGYVLSDGFRVP- 136

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            L   +  V+ GD++   IAAAS++AKV+RDRLM      YP YGF +H GY T  H   
Sbjct: 137 GLSVPSLPVVGGDAVVACIAAASVLAKVSRDRLMVAMDADYPGYGFAAHKGYCTRAHSLA 196

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           + + GP   HR +F  +R +
Sbjct: 197 LTQLGPCPEHRYSFINVRRI 216


>gi|225870570|ref|YP_002746517.1| ribonuclease HII [Streptococcus equi subsp. equi 4047]
 gi|225699974|emb|CAW93945.1| ribonuclease HII [Streptococcus equi subsp. equi 4047]
          Length = 257

 Score =  239 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 84/202 (41%), Positives = 120/202 (59%), Gaps = 6/202 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + +K    +AGIDEVGRG LAGPVV A +IL       G+NDSKKI   K E +
Sbjct: 57  LTYEQALYQKGFQAIAGIDEVGRGPLAGPVVAACVILPKGCTIKGLNDSKKIPKAKHEAI 116

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127
           Y+ I   A+ I +    +  ID+ NI++AT  A+  A+  L+     P   LID  ++  
Sbjct: 117 YQAIQKKALGIGLGIIDNHTIDRVNIYEATKLAMTAAINQLEGSVSKPDYLLIDAMTL-- 174

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           ++     A+IKGD+ S+SIAAASI+AKVTRDRLM    K +P YGF  + GY T +H Q 
Sbjct: 175 EVSIPQQAIIKGDASSMSIAAASIVAKVTRDRLMLDYDKAFPGYGFAKNAGYGTKEHLQG 234

Query: 188 IKEKGPSCIHRLTFRPLRNLSV 209
           + + G + IHR +F P++++ +
Sbjct: 235 LHQYGVTPIHRQSFEPIKSMIL 256


>gi|89890457|ref|ZP_01201967.1| ribonuclease HII, RNase HII [Flavobacteria bacterium BBFL7]
 gi|89517372|gb|EAS20029.1| ribonuclease HII, RNase HII [Flavobacteria bacterium BBFL7]
          Length = 199

 Score =  239 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 73/179 (40%), Positives = 105/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
            G DE GRG L GPV  AA+IL P+     ++DSKK+S K+R +L   I   AI   +S 
Sbjct: 13  CGTDEAGRGCLCGPVTAAAVILPPDFKSDLLDDSKKLSRKRRYQLRSLIEEHAISYHVSH 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
              + ID+ NI  A++ A++ A++ L++ P    +DG         QA  VIKGD   L 
Sbjct: 73  VMMETIDEINILNASILAMHQAIDGLKINPEHIAVDGNRFKPYADIQATTVIKGDGKYLH 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M    +++P+Y +  + GYPT KH++ IK+ G +  HR+TF+ L
Sbjct: 133 IAAASILAKTYRDDYMEKIAREHPEYDWHKNQGYPTKKHREAIKKYGTTPYHRMTFKLL 191


>gi|119774290|ref|YP_927030.1| ribonuclease HII [Shewanella amazonensis SB2B]
 gi|189043657|sp|A1S4Q4|RNH2_SHEAM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|119766790|gb|ABL99360.1| Ribonuclease H [Shewanella amazonensis SB2B]
          Length = 206

 Score =  239 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 91/184 (49%), Positives = 116/184 (63%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG L G VV AA+ILDPN    G+NDSKK++ KKR+ LY +I   A+ +S
Sbjct: 18  GRVAGVDEVGRGPLVGDVVTAAVILDPNKPIAGLNDSKKLTEKKRDALYLEIMDKALAVS 77

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  AS   ID+ NI  AT+ A+  AV  L ++P S L+DG   P D    A AV+KGD +
Sbjct: 78  VGRASPTEIDELNILHATMLAMQRAVAGLTIVPESVLVDGNRTP-DFGVPAHAVVKGDGL 136

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +I+AAS+IAKVTRDR M     +YP YGF  H GYPT  H + I   G    HR +FR
Sbjct: 137 IAAISAASVIAKVTRDREMGELDARYPQYGFAGHKGYPTKAHFEAISAHGVLAEHRRSFR 196

Query: 203 PLRN 206
           P+R 
Sbjct: 197 PVRE 200


>gi|332967913|gb|EGK07003.1| ribonuclease HII [Kingella kingae ATCC 23330]
          Length = 219

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 78/184 (42%), Positives = 110/184 (59%), Gaps = 1/184 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG L G V  AA++L  +    G+ DSKK+S KKR+ L  +I   AI  S+++
Sbjct: 30  AGVDEAGRGCLVGSVFAAAVMLPTDYALHGLTDSKKLSEKKRDALAVEIKQQAIAWSVAA 89

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           AS   I ++NI +ATL A+  A+  L   P    IDG  +P++L   A AV++GDS   +
Sbjct: 90  ASPAEIAQYNILQATLLAMTRAIAGLAKQPAFVWIDGNCVPKNLTMPAQAVVQGDSKIAT 149

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AK  RD  M   H++YP YGF  H GY TA H   +++ G    HR  F P++
Sbjct: 150 ISAASILAKTARDAEMYALHERYPQYGFAQHKGYGTAAHLAALQQFGALAEHRADFAPVK 209

Query: 206 NLSV 209
            + V
Sbjct: 210 AVLV 213


>gi|260887868|ref|ZP_05899131.1| ribonuclease HII [Selenomonas sputigena ATCC 35185]
 gi|330838733|ref|YP_004413313.1| Ribonuclease H [Selenomonas sputigena ATCC 35185]
 gi|260862374|gb|EEX76874.1| ribonuclease HII [Selenomonas sputigena ATCC 35185]
 gi|329746497|gb|AEB99853.1| Ribonuclease H [Selenomonas sputigena ATCC 35185]
          Length = 255

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 91/198 (45%), Positives = 129/198 (65%), Gaps = 3/198 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +  E + REK    VAG+DE GRG LAGPVVVAA+IL        +NDSKK+S   RE+L
Sbjct: 57  YHYEFLAREKGCTLVAGVDEAGRGPLAGPVVVAAVILPLGFFLPHLNDSKKLSAAMREKL 116

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  IT  A+ + I S S + ID+ NI++AT   +   V +L+  P+  L+D   +P  LP
Sbjct: 117 FSAITEGAVAVEIVSISEKIIDEKNIYQATKQGMCEVVASLRPQPQHVLLDA--VPLKLP 174

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +F+++ GD+ S SIAAASI+AKVTRDRLM    ++YP YGF  H GY TA+H + +++
Sbjct: 175 MTSFSIVHGDAKSASIAAASIMAKVTRDRLMLKYDEEYPQYGFKKHKGYGTAEHLEALQK 234

Query: 191 KGPSCIHRLTFRPLRNLS 208
            GP  IHR +F P+R+++
Sbjct: 235 YGPCPIHRRSFEPIRSMA 252


>gi|83749784|ref|ZP_00946758.1| Ribonuclease HII [Ralstonia solanacearum UW551]
 gi|207743230|ref|YP_002259622.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum
           IPO1609]
 gi|83723541|gb|EAP70745.1| Ribonuclease HII [Ralstonia solanacearum UW551]
 gi|206594627|emb|CAQ61554.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum
           IPO1609]
          Length = 236

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 76/194 (39%), Positives = 116/194 (59%), Gaps = 5/194 (2%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76
            V ++    + G+DE GRG LAGPV   A++L+P     G+ DSK ++ KKRE LY++I 
Sbjct: 20  AVGKRARRILCGVDEAGRGPLAGPVTAGAVVLNPRKPIKGLADSKVLTAKKREALYDEIV 79

Query: 77  SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLPCQ 132
             A+   ++ A+ + ID+ NI  AT+ A+  AV+ +    V+P    +DG   P+ +   
Sbjct: 80  EKALAWHVAEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVDGNRCPQ-VAFA 138

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             A++KGD++  +I+AASI+AKVTRDR +   H  +P YGFD H GY T +H   I+  G
Sbjct: 139 VEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAGYGTPQHLAAIERHG 198

Query: 193 PSCIHRLTFRPLRN 206
            +  HR +F P+R 
Sbjct: 199 VTPHHRRSFAPVRR 212


>gi|71082816|ref|YP_265535.1| ribonuclease HII (RNase HII) [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|97189139|sp|Q4FPF7|RNH2_PELUB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|71061929|gb|AAZ20932.1| Ribonuclease HII (RNase HII) [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 186

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 79/185 (42%), Positives = 118/185 (63%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82
           M  +AG+DEVGRG+L GPV  AA+IL+ +     + DSK ++  KREEL + I  ++I +
Sbjct: 1   MKILAGVDEVGRGSLIGPVYAAAVILNNSIDKKLLKDSKTLTKDKREELEKYIKKNSIWA 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I  AS + I+K NI  A+L A+  A+  L++ P   LIDG  +P+    +   VIKGD  
Sbjct: 61  IGQASTKEIEKINILHASLLAMKRAILKLKIKPSLVLIDGNKLPDLKNYKLEYVIKGDQK 120

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             SI+AASIIAKV+RD+ +    K++ +YG+D++ GY T +H + IK+ G +  HR TF 
Sbjct: 121 IPSISAASIIAKVSRDKFITKLSKEFNNYGWDTNSGYGTKEHLKAIKQFGITKYHRKTFS 180

Query: 203 PLRNL 207
           P+ +L
Sbjct: 181 PISDL 185


>gi|315225093|ref|ZP_07866910.1| ribonuclease HII [Capnocytophaga ochracea F0287]
 gi|314944776|gb|EFS96808.1| ribonuclease HII [Capnocytophaga ochracea F0287]
          Length = 198

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 3/186 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL  +     + DSK+++ K+R  L   I   A+  ++  
Sbjct: 12  AGTDEAGRGCLAGPVTAAAVILPSDFKNDLLTDSKQLTEKQRNLLRPIIEREAVAYAVCH 71

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
                ID+ NI +A++ A++ A+  L++ P    +DG             V+KGD    +
Sbjct: 72  VLPAEIDELNILRASITAMHRAIAQLKITPDFIAVDGNKFVPYQKIPYACVVKGDGKIQT 131

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR--P 203
           IAAASI+AK  RD  M    +++P+Y +  + GYPT +H++ I E G +  HR TF+  P
Sbjct: 132 IAAASILAKTYRDAYMEDLAQQFPEYHWQQNKGYPTPEHRKAIAEYGATKHHRKTFQLLP 191

Query: 204 LRNLSV 209
           +  LS+
Sbjct: 192 VEQLSL 197


>gi|289548139|ref|YP_003473127.1| ribonuclease H [Thermocrinis albus DSM 14484]
 gi|289181756|gb|ADC89000.1| Ribonuclease H [Thermocrinis albus DSM 14484]
          Length = 203

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 82/195 (42%), Positives = 111/195 (56%), Gaps = 5/195 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E    EK +  VAG+DE GRG LAGP+V  A+IL P   PF   DSKK+S  +REE Y 
Sbjct: 5   YELPFWEKGL-LVAGVDEAGRGPLAGPLVACAVILPPYTEPFLKGDSKKLSPSEREEAYR 63

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   A+ I  +    + ID+ NI +AT  A+  A+E+L+      + D   +  D    
Sbjct: 64  IIKERALSIGTAVVDSEVIDRINILQATRLAMKRALEDLKHPYDVVITDWVKLDVD---N 120

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             A+ KGD  SL  A AS++AKV RD++M   H+ YP Y F SH GYPT +H Q + +  
Sbjct: 121 CIAIPKGDERSLCCACASVVAKVLRDKIMEHYHRLYPQYDFASHKGYPTKEHLQRLLQYR 180

Query: 193 PSCIHRLTFRPLRNL 207
            S IHR +FRP++ L
Sbjct: 181 ESPIHRKSFRPVKAL 195


>gi|237737692|ref|ZP_04568173.1| ribonuclease HII [Fusobacterium mortiferum ATCC 9817]
 gi|229419572|gb|EEO34619.1| ribonuclease HII [Fusobacterium mortiferum ATCC 9817]
          Length = 206

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 84/194 (43%), Positives = 112/194 (57%), Gaps = 10/194 (5%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREE 70
           F+LE          + G+DE GRG LAG VV AA+ L   +     INDSKK++ KKRE+
Sbjct: 9   FDLEK------GKEIIGVDEAGRGPLAGSVVAAAVKLKRYSEELQEINDSKKLTEKKREK 62

Query: 71  LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI---PRSALIDGRSIPE 127
           L++ I  +  + I  AS Q ID+ NI  AT  A+  A+E L          L+DG     
Sbjct: 63  LFDIIMENFEVGIGIASVQEIDELNILNATFLAMRRAIEELDKKTNTDVLVLVDGNFKIR 122

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           +   +   +IKGD+ SLSIAAASIIAKVTRDR +    KKYP+Y F+ H GY T  H++ 
Sbjct: 123 EYIGKQEPIIKGDAKSLSIAAASIIAKVTRDRQLVEEGKKYPEYHFEKHKGYGTKAHREA 182

Query: 188 IKEKGPSCIHRLTF 201
           + + G + IHR TF
Sbjct: 183 LLQYGVTPIHRKTF 196


>gi|325856482|ref|ZP_08172171.1| ribonuclease HII [Prevotella denticola CRIS 18C-A]
 gi|325483451|gb|EGC86424.1| ribonuclease HII [Prevotella denticola CRIS 18C-A]
          Length = 200

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 69/179 (38%), Positives = 103/179 (57%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG L G V  AA+IL P      ++DSKK++ +KR  L + I   A+  ++  
Sbjct: 13  AGCDEAGRGCLVGSVYAAAVILPPGYQNSLLDDSKKLTARKRYALRDTIEHDAVAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + ID+ NI  A+  A++ A++ L+V P + ++DG             +IKGD   LS
Sbjct: 73  VTPEEIDRINILNASFLAMHRALDQLKVRPEAVIVDGNRFTPYRKLPFATIIKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M    ++YP Y +  ++GYPT KH+Q I+E G +  HR ++  L
Sbjct: 133 IAAASILAKTYRDDYMCSLAEEYPQYDWQKNMGYPTKKHRQAIREYGITPYHRRSYNLL 191


>gi|319937633|ref|ZP_08012037.1| ribonuclease [Coprobacillus sp. 29_1]
 gi|319807275|gb|EFW03887.1| ribonuclease [Coprobacillus sp. 29_1]
          Length = 210

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 77/195 (39%), Positives = 116/195 (59%), Gaps = 3/195 (1%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
               E          + G+DE GRG +AGP+VVA +I +       INDSK++S KKRE 
Sbjct: 4   RLRYEKAAYALGKSYIIGLDEAGRGPMAGPLVVAGVIFEKGYYHEAINDSKQLSEKKRES 63

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY+ I   A+   I     + +D+ N+++A+   +  A+ ++ + P  AL D    P   
Sbjct: 64  LYDLIIRDALAYQIEIIDVEDVDRLNVYQASKKGMIDAIHHIAIQPDFALSDAM--PLGD 121

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                A+IKGDS+S+SI AASI+AKVTRDR+M+    +YP+YGF  H GYPT +H++++K
Sbjct: 122 EIAHNAIIKGDSLSMSIGAASILAKVTRDRIMKKYDLQYPEYGFAQHKGYPTKQHKELLK 181

Query: 190 EKGPSCIHRLTFRPL 204
             G + IHR +F+P+
Sbjct: 182 MYGVTPIHRRSFQPV 196


>gi|169350423|ref|ZP_02867361.1| hypothetical protein CLOSPI_01191 [Clostridium spiroforme DSM 1552]
 gi|169292743|gb|EDS74876.1| hypothetical protein CLOSPI_01191 [Clostridium spiroforme DSM 1552]
          Length = 206

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 80/197 (40%), Positives = 112/197 (56%), Gaps = 4/197 (2%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
              +E E          + G+DE GRG +AG +VVA +I         INDSK++S+KKR
Sbjct: 1   MKRYEYENKYYNLGYDYIIGLDEAGRGPMAGELVVAGVIFPKGYYDERINDSKQLSNKKR 60

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           EELY  I  +A+   I   S + +DK N+++A+  A+   + NL      AL D   +  
Sbjct: 61  EELYGLIVENALAYDIEIVSVEDVDKLNVYQASKQAMEKCISNLMRDKMFALSDAMPLSY 120

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
                  A+IKGD+ S+SI AASI+AKVTRD LM    K YP+YGFD H GY T  H++ 
Sbjct: 121 ---FNHEAIIKGDAKSISIGAASILAKVTRDHLMEEYAKIYPEYGFDKHKGYVTKMHKEA 177

Query: 188 IKEKGPSCIHRLTFRPL 204
           +++ GP  IHR +F P+
Sbjct: 178 LEKYGPCPIHRKSFAPV 194


>gi|207723368|ref|YP_002253767.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum MolK2]
 gi|206588567|emb|CAQ35530.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum MolK2]
          Length = 236

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 75/194 (38%), Positives = 115/194 (59%), Gaps = 5/194 (2%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76
              ++    + G+DE GRG LAGPV   A++L+P     G+ DSK ++ KKRE LY++I 
Sbjct: 20  AAGKRARRILCGVDEAGRGPLAGPVTAGAVVLNPRKPIKGLADSKVLTAKKREALYDEIV 79

Query: 77  SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLPCQ 132
             A+   ++ A+ + ID+ NI  AT+ A+  AV+ +    V+P    +DG   P+ +   
Sbjct: 80  EKALAWHVAEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVDGNRCPQ-VAFA 138

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             A++KGD++  +I+AASI+AKVTRDR +   H  +P YGFD H GY T +H   I+  G
Sbjct: 139 VEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAGYGTPQHLAAIERHG 198

Query: 193 PSCIHRLTFRPLRN 206
            +  HR +F P+R 
Sbjct: 199 VTPHHRRSFAPVRR 212


>gi|163785164|ref|ZP_02179855.1| RNase HII [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879566|gb|EDP73379.1| RNase HII [Hydrogenivirga sp. 128-5-R1-1]
          Length = 190

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 82/192 (42%), Positives = 109/192 (56%), Gaps = 5/192 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           FE+E  + +K    + GIDE GRG LAGPVV AA+I   N   F   DSKK+S KKRE L
Sbjct: 2   FEIEKSLYQKGFKKIVGIDEAGRGPLAGPVVSAAVIFPSNIDIFITKDSKKLSPKKREIL 61

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +E+I   A+ + I       IDK NI+ AT  A+  A+  L+      + D        P
Sbjct: 62  FEEIKKKALAVGIGVVDSCEIDKVNIYNATKLAMKRALFTLKSDFDYIITDYVKFD---P 118

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               +V K D  S+S+AAASIIAKV RD++M    + YP   FD H GYPT  H++ IK+
Sbjct: 119 YPHISVKKADEKSISVAAASIIAKVYRDKIMEYFSEIYPH-SFDKHKGYPTKLHKEEIKK 177

Query: 191 KGPSCIHRLTFR 202
            G + IHR +F+
Sbjct: 178 FGITPIHRKSFK 189


>gi|163786300|ref|ZP_02180748.1| ribonuclease HII [Flavobacteriales bacterium ALC-1]
 gi|159878160|gb|EDP72216.1| ribonuclease HII [Flavobacteriales bacterium ALC-1]
          Length = 200

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 72/179 (40%), Positives = 104/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
            G DE GRG LAGPV  AA+IL  +     +NDSK++S K R  L   I + A+  ++  
Sbjct: 14  CGTDEAGRGCLAGPVTAAAVILPQSFNNKKLNDSKQLSEKNRNLLKPIIETEALSFAVHH 73

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
                ID  NI  A++ A++H+++ L++ P   ++DG         Q   +IKGDS  LS
Sbjct: 74  IFESEIDTINILNASIKAMHHSIDKLKITPNYIIVDGNKFKPYRDIQHKTIIKGDSKYLS 133

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M+  H+++P Y +  + GYPT +H+  IKE G +  HR +FR L
Sbjct: 134 IAAASILAKTYRDEYMKKIHEEFPMYNWKQNKGYPTKEHRAAIKEFGITKYHRKSFRLL 192


>gi|330997790|ref|ZP_08321625.1| ribonuclease HII [Paraprevotella xylaniphila YIT 11841]
 gi|329569678|gb|EGG51443.1| ribonuclease HII [Paraprevotella xylaniphila YIT 11841]
          Length = 207

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 71/179 (39%), Positives = 104/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG LAG V  AA+IL  +     +NDSK++S KKR  L  +I   A+  ++  
Sbjct: 13  AGLDEAGRGCLAGAVYAAAVILPKDYRNEMLNDSKQLSEKKRYLLRGQIERDALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + Q ID+ NI  A+  A++ A++ L V P + L+DG             V+KGD   +S
Sbjct: 73  VTPQEIDEINILNASFLAMHRALDQLAVRPEALLVDGNRFKPYRDLPHTTVVKGDGKYMS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H++YP Y +DS+ GYP   H++ I+  G +  HR+++  L
Sbjct: 133 IAAASILAKTYRDDYMLRLHEEYPVYHWDSNKGYPAKAHREAIRRHGVTPYHRMSYNLL 191


>gi|254179336|ref|ZP_04885935.1| ribonuclease HII [Burkholderia pseudomallei 1655]
 gi|184209876|gb|EDU06919.1| ribonuclease HII [Burkholderia pseudomallei 1655]
          Length = 214

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 88/183 (48%), Positives = 124/183 (67%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            V G+DE GRG LAGPVV AA++LDP     G++DSK +S KKRE L+++I + A+  S+
Sbjct: 27  IVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAHALAYSV 86

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS + ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  ++ A++ GD++ 
Sbjct: 87  ASASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM-LAIRSEAIVGGDALV 145

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+++P YGFD+H GY T +H   ++E GP   HR +F P
Sbjct: 146 PSISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAP 205

Query: 204 LRN 206
           +R 
Sbjct: 206 VRE 208


>gi|302038368|ref|YP_003798690.1| ribonuclease HII [Candidatus Nitrospira defluvii]
 gi|300606432|emb|CBK42765.1| Ribonuclease HII [Candidatus Nitrospira defluvii]
          Length = 224

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 87/201 (43%), Positives = 119/201 (59%), Gaps = 2/201 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P  E E   R +    +AG+DE GRG LAGPVV AA++L       G+NDSK++    R 
Sbjct: 12  PTEEFEVEARCRGYRHIAGLDEAGRGPLAGPVVAAAVVLPRRCSLPGLNDSKQVGESDRV 71

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            L+ +I   A  + I +A+   ID+ NI  AT  A+  A+E L + P   L+D  ++   
Sbjct: 72  RLFVEIVRRATGVGIGAATEAEIDQLNILHATRLAMRRALEALPLQPDFLLLDAVTL-SG 130

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L     ++IKGD +S SIAAASIIAKVTRDRLM   H+ YP Y F  H GY T +H +++
Sbjct: 131 LSIPQRSIIKGDGLSCSIAAASIIAKVTRDRLMVEYHRWYPQYNFAEHKGYGTPEHLRLL 190

Query: 189 KEKGPSCIHRLTFRPLRNLSV 209
           +E GP  IHR +F P++ L V
Sbjct: 191 REHGPCAIHRRSFAPVQQLCV 211


>gi|197104042|ref|YP_002129419.1| ribonuclease HII [Phenylobacterium zucineum HLK1]
 gi|196477462|gb|ACG76990.1| ribonuclease HII [Phenylobacterium zucineum HLK1]
          Length = 230

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 91/199 (45%), Positives = 113/199 (56%), Gaps = 7/199 (3%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKK 67
           P   LE         PV G+DE GRG  AGPV   A+ILD  P  +P G++DSKK+S K 
Sbjct: 13  PTLLLEKAFVG---GPVCGVDEAGRGPWAGPVCAGAVILDSNPRKVPKGLDDSKKLSAKA 69

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           RE L E+I   A+   +  AS   I   NI  AT  A+  A+E + V P  AL+DG    
Sbjct: 70  REALEEEIKEKAVAWGVGFASVSEIASLNILHATGLAMCRAIEAMAVQPAFALVDGN-YR 128

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            DLPC+   V+ GD+ S SIAAASI+AKV RDRLM      YP YGF SH GY    H +
Sbjct: 129 FDLPCEVTTVVGGDAKSKSIAAASILAKVARDRLMVEMDALYPGYGFASHKGYNAPSHVE 188

Query: 187 VIKEKGPSCIHRLTFRPLR 205
            +   GP  IHRL +RP++
Sbjct: 189 ALVSLGPCEIHRLAWRPVK 207


>gi|225009987|ref|ZP_03700459.1| Ribonuclease H [Flavobacteria bacterium MS024-3C]
 gi|225005466|gb|EEG43416.1| Ribonuclease H [Flavobacteria bacterium MS024-3C]
          Length = 193

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 71/184 (38%), Positives = 107/184 (58%), Gaps = 1/184 (0%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG DE GRG L+GPV  AA+IL  N     ++DSKK+S K+R  L   I   A+   +
Sbjct: 10  LIAGTDEAGRGCLSGPVTAAAVILPKNFYHPMLDDSKKLSAKQRAILAPIIKQEAVSYGV 69

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           S      ID+ NI +A++ A++ ++  L+ IP   ++DG      L      V+KGD   
Sbjct: 70  SHVFPHVIDRINILQASILAMHKSIAKLKTIPEKIIVDGNKFNPYLSIPHETVVKGDGKF 129

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAAS++AK  RD  M   H+K+P Y ++ ++GYPTAKH+  I   G +  HR TF+ 
Sbjct: 130 YAIAAASVLAKTARDEYMMELHQKFPLYQWNKNMGYPTAKHRNAIATYGITPHHRKTFKG 189

Query: 204 LRNL 207
           +++L
Sbjct: 190 VKDL 193


>gi|42560965|ref|NP_975416.1| ribonuclease H II [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|81829391|sp|Q6MTH8|RNH2_MYCMS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|42492462|emb|CAE77058.1| ribonuclease H II [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|301321294|gb|ADK69937.1| ribonuclease HII [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 207

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 76/189 (40%), Positives = 115/189 (60%), Gaps = 1/189 (0%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
            N+  ++G DE GRG LAGP+VVA++IL P+     I DSKK++ K R+ LY++I  + +
Sbjct: 15  HNITYLSGSDEAGRGCLAGPLVVASVILKPDYFNPLIKDSKKLNPKTRQVLYDEIIKNCL 74

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
              I   S + +D+ N  +A+L      + NL++ P  ALIDG    E    +   +IKG
Sbjct: 75  DYQIIIISSKQVDELNPLQASLLGFKTTINNLKITPDLALIDGNQNIELTNIKTLQIIKG 134

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D  S SIA +SI+AKVTRD+++    + YP+Y F SH GY T KH   I++ G   IHR 
Sbjct: 135 DDKSFSIACSSILAKVTRDKILDEYDQIYPNYDFKSHKGYCTKKHLLAIQKYGILDIHRK 194

Query: 200 TFRPLRNLS 208
           +++P++ +S
Sbjct: 195 SYKPIKKIS 203


>gi|330685675|gb|EGG97316.1| ribonuclease HII [Staphylococcus epidermidis VCU121]
          Length = 256

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 79/196 (40%), Positives = 119/196 (60%), Gaps = 4/196 (2%)

Query: 14  LEAMVREKNMW-PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
            E  +  +N    + GIDEVGRG LAGPVV  A+IL+P +   G+NDSKK+S K R  L 
Sbjct: 61  YENDILAQNSKAFICGIDEVGRGPLAGPVVACAVILNPGHRYLGLNDSKKVSAKNRAVLN 120

Query: 73  EKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           +++       +   A+   ID+ NI++AT  A+  A++ L+V P   LID  ++  ++  
Sbjct: 121 QQLIDGVTDYAYGIATSAEIDEMNIYQATRLAMQRAIDQLKVQPTHLLIDAMTLDNEI-- 178

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASI+AK  RD  M+   K+YP Y F+++VGY T  H + I + 
Sbjct: 179 NQTSIIKGDAKSVSIAAASIMAKEYRDNYMKDIAKQYPGYDFENNVGYGTKAHLEGIAQN 238

Query: 192 GPSCIHRLTFRPLRNL 207
           G    HR TF P++++
Sbjct: 239 GVISEHRKTFEPIKSI 254


>gi|311105997|ref|YP_003978850.1| ribonuclease HII [Achromobacter xylosoxidans A8]
 gi|310760686|gb|ADP16135.1| ribonuclease HII [Achromobacter xylosoxidans A8]
          Length = 202

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 81/191 (42%), Positives = 113/191 (59%), Gaps = 2/191 (1%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
           E+     AG+DE GRG LAG V  AA+IL+P     G+ DSK +    RE L  +I   +
Sbjct: 11  EQPAMVTAGVDEAGRGPLAGAVYAAAVILNPARPIAGLADSKVLKAATREALALEIQEFS 70

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           +   I+SAS   ID  NI +AT+ A+  AV+ L  +P+ AL+DG   P+ L C    VIK
Sbjct: 71  LAWCIASASVAEIDSMNILRATMLAMQRAVQGLSTMPQLALVDGNQAPK-LGCTVQTVIK 129

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD++  +I+AASI+AK  RD  +   H  YP Y FD H GY TA H ++++E GP   HR
Sbjct: 130 GDALVPAISAASILAKTARDADLLRLHALYPQYAFDQHKGYGTALHLEMLREHGPCAEHR 189

Query: 199 LTFRPLRNLSV 209
            +F P++  S+
Sbjct: 190 RSFAPIKAFSL 200


>gi|119510873|ref|ZP_01629997.1| Ribonuclease HII/HIII [Nodularia spumigena CCY9414]
 gi|119464482|gb|EAW45395.1| Ribonuclease HII/HIII [Nodularia spumigena CCY9414]
          Length = 244

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 85/187 (45%), Positives = 113/187 (60%), Gaps = 5/187 (2%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
             VAGIDEVGRGAL GPVV AA+IL    +P      I DSKK+S  +R +L ++I   A
Sbjct: 55  GLVAGIDEVGRGALFGPVVAAAVILPACALPKLMAAEIKDSKKLSSSRRTQLSQQICDLA 114

Query: 80  -IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
              +I  AS   ID+ NI +ATL A+  AV  L+V P+  L+DG    +DL      ++K
Sbjct: 115 TDWNIGFASSAEIDQINILQATLLAMRRAVLKLKVQPQLCLVDGNQPIKDLLIPQETIVK 174

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD  SL+IAAASI+AKV RD L+     KYP Y    + GY + KH   +++ GPS +HR
Sbjct: 175 GDERSLTIAAASIVAKVWRDELVMRLALKYPLYNLKDNKGYGSQKHLVALQKYGPSRLHR 234

Query: 199 LTFRPLR 205
            +FRP +
Sbjct: 235 KSFRPCQ 241


>gi|313633474|gb|EFS00298.1| ribonuclease HII [Listeria seeligeri FSL N1-067]
          Length = 261

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 89/195 (45%), Positives = 118/195 (60%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E  + ++    +AG+DEVGRG LAGPVV AA+IL  N    GINDSK++S  KRE L+
Sbjct: 60  QYENDLYQQGYKFIAGVDEVGRGPLAGPVVAAAVILPENFSVVGINDSKQLSELKRETLF 119

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E I   AI + +    H  ID+ NI++AT  A+  A++ L   P   LID    P     
Sbjct: 120 ELIKQQAIAVGVGIVEHDVIDEVNIYEATKLAMRMALDELNPSPDFILIDAM--PLKYTE 177

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASIIAKVTRDRLM+     YP Y F S++GY T KH   +   
Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRLMKDYDVAYPGYDFASNMGYGTKKHLIGLDTI 237

Query: 192 GPSCIHRLTFRPLRN 206
           G   IHRL+F P++ 
Sbjct: 238 GVCPIHRLSFAPVKE 252


>gi|186684020|ref|YP_001867216.1| ribonuclease HII [Nostoc punctiforme PCC 73102]
 gi|186466472|gb|ACC82273.1| ribonuclease HII/HIII [Nostoc punctiforme PCC 73102]
          Length = 218

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 85/187 (45%), Positives = 115/187 (61%), Gaps = 5/187 (2%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
             VAG+DEVGRGAL GPVV AA+IL  + +P      I DSKK+S  +R +L ++I + A
Sbjct: 25  GLVAGVDEVGRGALFGPVVAAAVILPDHALPILIAAKIKDSKKLSSSRRTQLAQQICALA 84

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           I   I  AS   IDK NI +ATL A+  AV  L+V P   L+DG    +DL      +IK
Sbjct: 85  IDWKIGFASTAEIDKINILQATLLAMKRAVLKLKVQPAICLVDGNQSIKDLLLPQQTIIK 144

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD  SL+IA+ASI+AKV RD L+     KYP Y  + + GY + +H   +++ GPS +HR
Sbjct: 145 GDERSLAIASASIVAKVWRDDLVLRLALKYPMYNLERNKGYGSQRHLLALQQYGPSPLHR 204

Query: 199 LTFRPLR 205
            +FRP +
Sbjct: 205 QSFRPCQ 211


>gi|167720149|ref|ZP_02403385.1| ribonuclease HII [Burkholderia pseudomallei DM98]
 gi|167739156|ref|ZP_02411930.1| ribonuclease HII [Burkholderia pseudomallei 14]
 gi|167824746|ref|ZP_02456217.1| ribonuclease HII [Burkholderia pseudomallei 9]
 gi|167903248|ref|ZP_02490453.1| ribonuclease HII [Burkholderia pseudomallei NCTC 13177]
 gi|167911490|ref|ZP_02498581.1| ribonuclease HII [Burkholderia pseudomallei 112]
 gi|226200132|ref|ZP_03795678.1| ribonuclease HII [Burkholderia pseudomallei Pakistan 9]
 gi|254297220|ref|ZP_04964673.1| ribonuclease HII [Burkholderia pseudomallei 406e]
 gi|157807288|gb|EDO84458.1| ribonuclease HII [Burkholderia pseudomallei 406e]
 gi|225927816|gb|EEH23857.1| ribonuclease HII [Burkholderia pseudomallei Pakistan 9]
          Length = 214

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 88/183 (48%), Positives = 124/183 (67%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            V G+DE GRG LAGPVV AA++LDP     G++DSK +S KKRE L+++I + A+  S+
Sbjct: 27  IVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAHALAYSV 86

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS + ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  ++ A++ GD++ 
Sbjct: 87  ASASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM-LAIRSEAIVGGDALV 145

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+++P YGFD+H GY T +H   ++E GP   HR +F P
Sbjct: 146 PSISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAP 205

Query: 204 LRN 206
           +R 
Sbjct: 206 VRE 208


>gi|253702077|ref|YP_003023266.1| ribonuclease HII [Geobacter sp. M21]
 gi|259494065|sp|C6E5I4|RNH2_GEOSM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|251776927|gb|ACT19508.1| Ribonuclease H [Geobacter sp. M21]
          Length = 230

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 98/210 (46%), Positives = 130/210 (61%), Gaps = 7/210 (3%)

Query: 1   MFCNSIPERP--HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN 58
           +F ++ P+ P     LE     +  + +AGIDE GRG LAGPVV AA+IL P  +  G+N
Sbjct: 4   LFPDN-PKSPIDLLALEGQALRRGFFRIAGIDEAGRGPLAGPVVAAAVILPPGLLLPGVN 62

Query: 59  DSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117
           DSK+++ +KREEL++ I   A+ + +    H  +D+ NI +ATL A+  AV  L + P  
Sbjct: 63  DSKQLTEEKREELFDVIHREALAVGVGIGDHALVDRINILQATLSAMRDAVRALSMTPGF 122

Query: 118 ALIDGRS-IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
            LIDG S IP ++P     V KGDS+SLSIA+ASIIAKVTRDR+M     +YP YGF SH
Sbjct: 123 LLIDGISNIPMNIP--QRTVKKGDSLSLSIASASIIAKVTRDRMMVEYDAQYPGYGFASH 180

Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
            GY  A H   I E GP  IHR TF  ++ 
Sbjct: 181 KGYGAASHLAAIAELGPCPIHRKTFSGVKE 210


>gi|291614100|ref|YP_003524257.1| ribonuclease H [Sideroxydans lithotrophicus ES-1]
 gi|291584212|gb|ADE11870.1| Ribonuclease H [Sideroxydans lithotrophicus ES-1]
          Length = 191

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 82/184 (44%), Positives = 117/184 (63%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            + G+DE GRG LAGPV  AA+ILD +    G+ DSKK+S ++R++L   I   A+  ++
Sbjct: 6   LICGVDEAGRGPLAGPVSAAAVILDKSRPIEGLADSKKLSERQRDQLAPLIRERALAWAV 65

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI +ATL A+  AV  L   P+  L+DG   P+     + A++KGDS  
Sbjct: 66  AYAEVEEIDRLNILQATLLAMKRAVLALHTQPQQVLVDGLYCPQT-GIPSQAIVKGDSKV 124

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AK  RD LM   H++YP YGFD H GYPTA H   +++ G S +HR +FRP
Sbjct: 125 AAISAASILAKTARDELMLKMHEQYPQYGFDGHKGYPTAAHLAALRQHGVSDVHRRSFRP 184

Query: 204 LRNL 207
           +R L
Sbjct: 185 VREL 188


>gi|310641522|ref|YP_003946280.1| ribonuclease hii [Paenibacillus polymyxa SC2]
 gi|309246472|gb|ADO56039.1| Ribonuclease HII [Paenibacillus polymyxa SC2]
          Length = 229

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 86/192 (44%), Positives = 114/192 (59%), Gaps = 4/192 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E    E++   +AGIDEVGRG L G VV AA+IL    +  G++DSKK++ KKRE  
Sbjct: 26  LHYEKKCWEQSCERIAGIDEVGRGCLFGDVVAAAVILPVGELLEGVDDSKKLTDKKREAY 85

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           YE I   AI + +     + ID+ NI +A   A+  AVE L V P   L+D   +  D+P
Sbjct: 86  YELIMEKAIAVGVGHVDARMIDEINIKQAARLAMKKAVEALHVSPDYLLVDAEKV--DVP 143

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMR-IAHKKYPDYGFDSHVGYPTAKHQQVIK 189
               ++IKGD+ S SIAAASIIAKVTRDRL +     KYP+YG   H GY T  H++ I 
Sbjct: 144 IPQLSIIKGDANSQSIAAASIIAKVTRDRLCKGEWDAKYPEYGIGIHKGYATKLHREQIL 203

Query: 190 EKGPSCIHRLTF 201
             GP+ +HR +F
Sbjct: 204 ALGPTEMHRRSF 215


>gi|120437251|ref|YP_862937.1| ribonuclease HII [Gramella forsetii KT0803]
 gi|189043601|sp|A0M5H5|RNH2_GRAFK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|117579401|emb|CAL67870.1| ribonuclease HII [Gramella forsetii KT0803]
          Length = 198

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 70/180 (38%), Positives = 101/180 (56%), Gaps = 1/180 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAG DE GRG LAGPV  AA+IL        +NDSK ++ K R  L   I   AI   ++
Sbjct: 11  VAGADEAGRGCLAGPVTAAAVILPIEFKNAVLNDSKTLNLKNRNFLKSLIEDEAITYGVA 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
               + ID+ NI  A++ A++ A++ L+  P   ++DG             +IKGD   +
Sbjct: 71  HVFMKEIDEINILNASILAMHRALQVLKFDPDHIIVDGNRFKPYQKIPHECIIKGDGKYM 130

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASI+AK  RD  M   H+++PDY +  + GYPT +H+  IK+ G +  HR +F+ L
Sbjct: 131 SIAAASILAKTYRDEFMEKIHEEFPDYNWKKNKGYPTKEHRAAIKKYGVTKYHRKSFKLL 190


>gi|313638164|gb|EFS03420.1| ribonuclease HII [Listeria seeligeri FSL S4-171]
          Length = 261

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 89/195 (45%), Positives = 118/195 (60%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E  + ++    +AG+DEVGRG LAGPVV AA+IL  N    GINDSK++S  KRE L+
Sbjct: 60  QYENDLYQQGYKFIAGVDEVGRGPLAGPVVAAAVILPENFSVVGINDSKQLSELKRETLF 119

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E I   AI + +    H  ID+ NI++AT  A+  A++ L   P   LID    P     
Sbjct: 120 ELIKQQAIAVGVGIIEHDVIDEVNIYEATKLAMRMALDELNPSPDFILIDAM--PLKYTE 177

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASIIAKVTRDRLM+     YP Y F S++GY T KH   +   
Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRLMKDYDVAYPGYDFASNMGYGTKKHLIGLDTI 237

Query: 192 GPSCIHRLTFRPLRN 206
           G   IHRL+F P++ 
Sbjct: 238 GVCPIHRLSFAPVKE 252


>gi|134277824|ref|ZP_01764539.1| ribonuclease HII [Burkholderia pseudomallei 305]
 gi|134251474|gb|EBA51553.1| ribonuclease HII [Burkholderia pseudomallei 305]
          Length = 214

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 88/183 (48%), Positives = 124/183 (67%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            V G+DE GRG LAGPVV AA++LDP     G++DSK +S KKRE L+++I + A+  S+
Sbjct: 27  IVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAHALAYSV 86

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS + ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  ++ A++ GD++ 
Sbjct: 87  ASASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM-LAIRSEAIVGGDALV 145

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+++P YGFD+H GY T +H   ++E GP   HR +F P
Sbjct: 146 PSISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAP 205

Query: 204 LRN 206
           +R 
Sbjct: 206 VRE 208


>gi|312865274|ref|ZP_07725502.1| ribonuclease HII [Streptococcus downei F0415]
 gi|311099385|gb|EFQ57601.1| ribonuclease HII [Streptococcus downei F0415]
          Length = 255

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 86/197 (43%), Positives = 121/197 (61%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  +    +  +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKKI  K+   +
Sbjct: 58  LAYEKALYADGLELIAGIDEVGRGPLAGPVVAAAVILPKDCKIKGLNDSKKIPKKRHGLI 117

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y ++   A+ + I   S++ ID  NI++AT  A+  AV  L + P+  LID   +  DL 
Sbjct: 118 YNQVMDQALAVGIGLKSNEVIDHVNIYEATKLAMLEAVGQLALRPQHLLIDAMDL--DLE 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ SLSIAAASI+AKVTRDRLM    +K+P Y F  + GY T  H + +K+
Sbjct: 176 IPQTSIIKGDASSLSIAAASIVAKVTRDRLMADYDEKFPGYDFSHNAGYGTKSHLEGLKK 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            G S IHR +F P++++
Sbjct: 236 WGVSPIHRRSFEPVKSM 252


>gi|332881721|ref|ZP_08449369.1| ribonuclease HII [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332680360|gb|EGJ53309.1| ribonuclease HII [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 207

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 72/179 (40%), Positives = 105/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG LAG V  AA+IL  +     +NDSK++S KKR  L E+I   A+  ++  
Sbjct: 13  AGLDEAGRGCLAGAVYAAAVILQKDYRNEMLNDSKQLSEKKRYLLREQIERDALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + Q ID+ NI  A+  A++ A++ L V P + L+DG             V+KGD   +S
Sbjct: 73  VTPQEIDEINILNASFLAMHRALDQLAVRPEALLVDGNRFKPYRDLPHTTVVKGDGKYMS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H++YP Y +DS+ GYP   H++ I+  G +  HR+++  L
Sbjct: 133 IAAASILAKTYRDDYMLRLHEEYPVYHWDSNKGYPAKAHREAIRRHGVTPYHRMSYNLL 191


>gi|313204705|ref|YP_004043362.1| RNAse hii [Paludibacter propionicigenes WB4]
 gi|312444021|gb|ADQ80377.1| RNase HII [Paludibacter propionicigenes WB4]
          Length = 220

 Score =  238 bits (608), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 67/176 (38%), Positives = 103/176 (58%), Gaps = 1/176 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
            G DE GRG LAGPVV AA+IL  +     +NDSK++S ++R+ L   I   A+   ++ 
Sbjct: 14  CGCDEAGRGCLAGPVVAAAVILPADFDCPLLNDSKQLSEQERDTLRPIIEQQALAWGVAL 73

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
                ID+ NI  A++ A++ A++ L + P   ++DG             ++KGDS  LS
Sbjct: 74  VDSGEIDEINILNASILAMHRAIDKLNIRPEFIIVDGNKFKSYADIPYQTIVKGDSKYLS 133

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           IAAAS++AK  RD +M+  H +YP Y +D +  YPT KH+  I++ G +  HRL++
Sbjct: 134 IAAASVLAKTHRDEMMQQLHAEYPHYDWDKNKAYPTVKHRNAIRKFGTTPYHRLSY 189


>gi|213962065|ref|ZP_03390330.1| ribonuclease HII [Capnocytophaga sputigena Capno]
 gi|213955418|gb|EEB66735.1| ribonuclease HII [Capnocytophaga sputigena Capno]
          Length = 198

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 67/186 (36%), Positives = 101/186 (54%), Gaps = 3/186 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  A +IL P+     + DSK+++ K+R  L   I   A+  ++  
Sbjct: 12  AGTDEAGRGCLAGPVTAAGVILPPDFKNDLLTDSKQLTEKQRNLLRPIIEREAVAYAVCH 71

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
                ID+ NI +A++ A++ A+  L   P    +DG             V+KGD    +
Sbjct: 72  VLPAEIDELNILRASITAMHRAIAQLSPTPEFIAVDGNKFVPYQKIPYACVVKGDGKIQT 131

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR--P 203
           IAAASI+AK  RD  M    +++P+Y +  + GYPT +H++ I E G +  HR TF+  P
Sbjct: 132 IAAASILAKTYRDAYMEDLAQQFPEYHWQQNKGYPTPEHRKAIAEHGATEHHRKTFQLLP 191

Query: 204 LRNLSV 209
           +  LS+
Sbjct: 192 VEQLSL 197


>gi|83319843|ref|YP_424513.1| ribonuclease HII, putative [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|97182957|sp|Q2SRV0|RNH2_MYCCT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|83283729|gb|ABC01661.1| ribonuclease HII, putative [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 207

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 77/204 (37%), Positives = 123/204 (60%), Gaps = 2/204 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           +  R  F+ + +  + N+  ++G DE GRG LAGP+VVA++IL P+     I DSKK++ 
Sbjct: 1   MINRKSFD-DQIKLDHNITYLSGSDEAGRGCLAGPLVVASVILKPDYFNPLIKDSKKLNP 59

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           K R+ L+++I  + +   I   S + +D+ N  +A+L      + NL++ P  ALIDG  
Sbjct: 60  KTRQVLFDEIIKNCLDYQIMIISSKQVDELNPLQASLLGFKTTISNLKITPDLALIDGNQ 119

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
                  +  ++IKGD  S SIA +SI+AKVTRD+++    + YP+YGF SH GY T KH
Sbjct: 120 NINLENIKTLSIIKGDDNSFSIACSSILAKVTRDKILDQYDQIYPNYGFKSHKGYCTKKH 179

Query: 185 QQVIKEKGPSCIHRLTFRPLRNLS 208
              I++ G   IHR +++P++ +S
Sbjct: 180 LLAIQKYGVLDIHRKSYKPIKKIS 203


>gi|258406140|ref|YP_003198882.1| Ribonuclease H [Desulfohalobium retbaense DSM 5692]
 gi|257798367|gb|ACV69304.1| Ribonuclease H [Desulfohalobium retbaense DSM 5692]
          Length = 197

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 76/182 (41%), Positives = 104/182 (57%), Gaps = 2/182 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
           + VAG+DE GRG LAGPVV AA+IL       G+ DSK++S K+RE L   I   A+  +
Sbjct: 5   YRVAGVDEAGRGCLAGPVVAAAVILPKTWDLPGMTDSKQLSAKRREVLAGAIKEQALYWA 64

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +       ID  NI ++T  A+  A+E L  +P    IDG   P        +++ GDS 
Sbjct: 65  LGVVWPPVIDTINILQSTKRAMLTAIERLGHVPDMVYIDGNQ-PVPTSLPQKSIVGGDSS 123

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              IAAASI+AK  RDR+M    ++YP YGF  H GY T  H + ++  GPS +HRLTF+
Sbjct: 124 EPCIAAASIVAKTFRDRVMVSLERRYPGYGFARHKGYGTRAHLEALRRLGPSRMHRLTFK 183

Query: 203 PL 204
            +
Sbjct: 184 GV 185


>gi|89895335|ref|YP_518822.1| hypothetical protein DSY2589 [Desulfitobacterium hafniense Y51]
 gi|122482323|sp|Q24UB4|RNH2_DESHY RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|89334783|dbj|BAE84378.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 260

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 86/196 (43%), Positives = 114/196 (58%), Gaps = 2/196 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  +       +AGIDE GRG LAGPVV A  IL       G+NDSKK++  KRE+L
Sbjct: 61  LREEKQLWLNGYLHIAGIDEAGRGPLAGPVVAATCILPAKFNLPGLNDSKKLTESKREKL 120

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +++I   AI  ++ SA    ID  NI +AT  A+  AVE L+V P   LID   +P  L 
Sbjct: 121 FQQIKEQAIGYAVGSAEPAEIDGLNILQATKLAMKRAVEGLKVRPHFLLIDALELP-SLK 179

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +I GD++S SIAAASI+AKV+RD LM    K YP+YGF  + GY T +H   ++ 
Sbjct: 180 IPQKGIIDGDALSASIAAASILAKVSRDHLMGELDKLYPEYGFAKNKGYGTREHLMALRR 239

Query: 191 KGPSCIHRLTFRPLRN 206
            G S IHR +F P++ 
Sbjct: 240 CGVSPIHRRSFAPVQQ 255


>gi|163754098|ref|ZP_02161221.1| ribonuclease HII [Kordia algicida OT-1]
 gi|161326312|gb|EDP97638.1| ribonuclease HII [Kordia algicida OT-1]
          Length = 198

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 70/179 (39%), Positives = 102/179 (56%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL  +     +NDSK++S KKRE L   I   A+   ++ 
Sbjct: 12  AGTDEAGRGCLAGPVTAAAVILPKDFSNEILNDSKQLSEKKREILRPVIELEALTFGVAH 71

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
                IDK NI  A++  ++ A+  L  +P   ++DG             +IKGD   L+
Sbjct: 72  IYPVEIDKINILNASILGMHQAIAKLSTVPEHIIVDGNKFKPYKDIPYQTIIKGDGKYLN 131

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAAS++AK  RD  M   H+++P Y +  + GYPT +H++ IK+ G +  HR++FR L
Sbjct: 132 IAAASVLAKTYRDAYMEKIHEEFPMYNWKKNKGYPTVEHREAIKKYGTTKYHRMSFRLL 190


>gi|260061789|ref|YP_003194869.1| ribonuclease HII [Robiginitalea biformata HTCC2501]
 gi|88785921|gb|EAR17090.1| ribonuclease HII [Robiginitalea biformata HTCC2501]
          Length = 198

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 73/179 (40%), Positives = 107/179 (59%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85
           AG DE GRG LAGPV  AA+IL        +NDSKK+S  +RE L  KI   A+   ++ 
Sbjct: 12  AGTDEAGRGCLAGPVTAAAVILPERFEDPLLNDSKKLSADQRERLAPKILREALATGVAH 71

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
                ID+ NI +A+L A++ A++ L + P +  +DG             +++GD   L+
Sbjct: 72  IPPATIDEINILQASLQAMHRALDQLGMRPEAIAVDGNRFLPYEGIPYQCLVRGDGRYLN 131

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAAS++AK  RD  MR  H++YP YG+D + GYPT +H++ +++ GPS  HR +FR L
Sbjct: 132 IAAASVLAKTARDARMRELHREYPQYGWDRNKGYPTQEHREALRKHGPSPYHRQSFRLL 190


>gi|157964267|ref|YP_001499091.1| ribonuclease HII [Rickettsia massiliae MTU5]
 gi|189043648|sp|A8F0V8|RNH2_RICM5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157844043|gb|ABV84544.1| Ribonuclease HII [Rickettsia massiliae MTU5]
          Length = 194

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 88/178 (49%), Positives = 113/178 (63%), Gaps = 2/178 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
            VAGIDE GRG LAGPVV +A+I+D  NI  GI DSKK+S K RE LYE+ITS+ + + +
Sbjct: 17  IVAGIDEAGRGPLAGPVVASAVIIDNANIITGIKDSKKLSKKTRELLYEQITSNYVWATA 76

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             SH  ID  NI +AT  A   AV NL + P   L+DG    +D   +  ++I GD++SL
Sbjct: 77  IISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKD--ERFVSIINGDNLSL 134

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           SIAAASI+AKVTRDRLM     + P Y +  + GY T +H + I   G S  HR +FR
Sbjct: 135 SIAAASIVAKVTRDRLMLDLSAELPQYLWHKNSGYGTKEHIEAINIHGLSPYHRRSFR 192


>gi|22298205|ref|NP_681452.1| ribonuclease H [Thermosynechococcus elongatus BP-1]
 gi|39932394|sp|Q8DL36|RNH2_THEEB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|22294384|dbj|BAC08214.1| ribonuclease H [Thermosynechococcus elongatus BP-1]
          Length = 214

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 82/202 (40%), Positives = 117/202 (57%), Gaps = 5/202 (2%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHK 66
           E      E    ++    V G+DEVGRG LAGPVV AA+IL  + +P   + DSK+++ +
Sbjct: 2   EPLSLIYEQAYWQQGYSRVVGVDEVGRGCLAGPVVAAAVILPVDCVPLPEVRDSKQLTAR 61

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R  L+ +I   AI I I SAS   ID+ NI +AT  A+  A+  +      ALIDG+  
Sbjct: 62  QRSRLFAQIYHQAIAIGIGSASVAEIDQVNILQATYRAMARALGRVAPW-DHALIDGKLT 120

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
                 +  A+I GD  S SIA ASIIAKV RDR M    ++YP YG++ +VGY T +H+
Sbjct: 121 KTAPFERVTAIIGGDRHSYSIACASIIAKVRRDRFMARLARRYPQYGWERNVGYGTPEHR 180

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
           Q + + G +  HR +F  L++L
Sbjct: 181 QALDQYGLTPWHRRSF--LKSL 200


>gi|34540527|ref|NP_905006.1| ribonuclease HII [Porphyromonas gingivalis W83]
 gi|38605679|sp|Q51832|RNH2_PORGI RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|34396840|gb|AAQ65905.1| ribonuclease HII [Porphyromonas gingivalis W83]
          Length = 201

 Score =  238 bits (607), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 74/179 (41%), Positives = 99/179 (55%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
            G DE GRG LAGPV  AA+IL  +     +NDSK++S K+R  L   I S  I   I  
Sbjct: 14  CGCDEAGRGCLAGPVYAAAVILPADFSHPLLNDSKQLSEKQRYTLRPVIESETIGWGIGI 73

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S Q ID+ NI +A+  A++ A+E L   P   LIDG             ++ GD+   S
Sbjct: 74  VSPQEIDEINILRASFLAMHRAIEQLPFRPERLLIDGNRFDPFEQIPHHCIVGGDARYRS 133

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   +K +P YG++ + GYP+  H+  I+  G S  HRLTFR +
Sbjct: 134 IAAASILAKTYRDDSMLRLNKDFPMYGWERNKGYPSPAHKSAIRRFGVSPHHRLTFRGV 192


>gi|317406254|gb|EFV86498.1| ribonuclease HII [Achromobacter xylosoxidans C54]
          Length = 202

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 83/184 (45%), Positives = 111/184 (60%), Gaps = 2/184 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG LAG V  AA+ILDP     G+ DSK +    RE L  +I + A+   ++S
Sbjct: 18  AGVDEAGRGPLAGAVYAAAVILDPARPIDGLADSKVLKAATREALALEIQAHALAWCVAS 77

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           AS   ID  NI +ATL A+  AVE L + P+ AL+DG   P+ L C    VIKGD++  +
Sbjct: 78  ASVAEIDSLNILRATLLAMRRAVEGLSLAPQLALVDGNQAPK-LGCTVQTVIKGDALVPA 136

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AK  RD  +   H  YP Y FD H GY TA H Q+++E GP   HR +F P++
Sbjct: 137 ISAASILAKTARDADLLRLHSLYPQYAFDQHKGYGTALHLQMLREHGPCAEHRRSFAPIK 196

Query: 206 NLSV 209
              +
Sbjct: 197 AFGL 200


>gi|20372971|dbj|BAB91155.1| ribonuclease HII [Geobacillus stearothermophilus]
          Length = 259

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 83/195 (42%), Positives = 121/195 (62%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  +    +  +AGIDE GRG LAGPVV A++IL P+    G++DSK+++  KRE L+
Sbjct: 61  RYERELYAAGIERIAGIDEAGRGPLAGPVVAASVILPPDAYLPGLDDSKRLTAAKREALF 120

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I + A+ + I   S   ID+ NI++AT  A+  AV  L   P   L+D  ++P  LP 
Sbjct: 121 AQIEACAVAVGIGIVSAAEIDERNIYEATKQAMAKAVSALSPPPDYLLVDAMAVPCALP- 179

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               ++KGD+ S SIAAASI+AKVTRDRLM+   ++YP YGF  H+GY T +H + I+  
Sbjct: 180 -QRRLMKGDANSASIAAASIMAKVTRDRLMKELDRRYPQYGFARHMGYGTPEHLEAIRRY 238

Query: 192 GPSCIHRLTFRPLRN 206
           G +  HR +F P++ 
Sbjct: 239 GITPEHRRSFAPVKE 253


>gi|323700101|ref|ZP_08112013.1| Ribonuclease H [Desulfovibrio sp. ND132]
 gi|323460033|gb|EGB15898.1| Ribonuclease H [Desulfovibrio desulfuricans ND132]
          Length = 213

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 104/185 (56%), Gaps = 5/185 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DE GRG LAGPVV  A IL       G++DSKK++  KRE LY +I   A+   + 
Sbjct: 17  IAGVDEAGRGCLAGPVVAGACILPAEYDLPGLDDSKKLTAAKREALYPRIREQAVAWGLG 76

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED----LPCQAFAVIKGD 140
            A    ID+ NI +AT  A+  AV  L+  PR   IDG  +              V++GD
Sbjct: 77  VAWPWEIDEINILQATFRAMSRAVWALKAEPRFLRIDGDKLIPGHALQRDIPQECVVQGD 136

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
               +I+AAS++AK  RDRLM    ++YP YG   H+GY T  H   I+E GP  +HRLT
Sbjct: 137 GKVPAISAASVLAKTFRDRLMVRLARRYPGYGLAKHMGYGTEAHVAAIRELGPCRLHRLT 196

Query: 201 FRPLR 205
           FR +R
Sbjct: 197 FRKVR 201


>gi|53723725|ref|YP_103181.1| ribonuclease HII [Burkholderia mallei ATCC 23344]
 gi|67641696|ref|ZP_00440465.1| ribonuclease HII [Burkholderia mallei GB8 horse 4]
 gi|121600420|ref|YP_993357.1| ribonuclease HII [Burkholderia mallei SAVP1]
 gi|124383370|ref|YP_001029206.1| ribonuclease HII [Burkholderia mallei NCTC 10229]
 gi|126448047|ref|YP_001080864.1| ribonuclease HII [Burkholderia mallei NCTC 10247]
 gi|126454836|ref|YP_001066737.1| ribonuclease HII [Burkholderia pseudomallei 1106a]
 gi|167816367|ref|ZP_02448047.1| ribonuclease HII [Burkholderia pseudomallei 91]
 gi|167846278|ref|ZP_02471786.1| ribonuclease HII [Burkholderia pseudomallei B7210]
 gi|167894859|ref|ZP_02482261.1| ribonuclease HII [Burkholderia pseudomallei 7894]
 gi|167919499|ref|ZP_02506590.1| ribonuclease HII [Burkholderia pseudomallei BCC215]
 gi|217421612|ref|ZP_03453116.1| ribonuclease HII [Burkholderia pseudomallei 576]
 gi|242316504|ref|ZP_04815520.1| ribonuclease HII [Burkholderia pseudomallei 1106b]
 gi|254177550|ref|ZP_04884205.1| ribonuclease HII [Burkholderia mallei ATCC 10399]
 gi|254200133|ref|ZP_04906499.1| ribonuclease HII [Burkholderia mallei FMH]
 gi|254206471|ref|ZP_04912823.1| ribonuclease HII [Burkholderia mallei JHU]
 gi|254358121|ref|ZP_04974394.1| ribonuclease HII [Burkholderia mallei 2002721280]
 gi|81604828|sp|Q62JD8|RNH2_BURMA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166225173|sp|A3MKS8|RNH2_BURM7 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166225174|sp|A2SB87|RNH2_BURM9 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166225175|sp|A1V554|RNH2_BURMS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166225176|sp|A3NWL6|RNH2_BURP0 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|52427148|gb|AAU47741.1| ribonuclease HII [Burkholderia mallei ATCC 23344]
 gi|121229230|gb|ABM51748.1| ribonuclease HII [Burkholderia mallei SAVP1]
 gi|124291390|gb|ABN00659.1| ribonuclease HII [Burkholderia mallei NCTC 10229]
 gi|126228478|gb|ABN92018.1| ribonuclease HII [Burkholderia pseudomallei 1106a]
 gi|126240917|gb|ABO04010.1| ribonuclease HII [Burkholderia mallei NCTC 10247]
 gi|147749729|gb|EDK56803.1| ribonuclease HII [Burkholderia mallei FMH]
 gi|147753914|gb|EDK60979.1| ribonuclease HII [Burkholderia mallei JHU]
 gi|148027248|gb|EDK85269.1| ribonuclease HII [Burkholderia mallei 2002721280]
 gi|160698589|gb|EDP88559.1| ribonuclease HII [Burkholderia mallei ATCC 10399]
 gi|217395354|gb|EEC35372.1| ribonuclease HII [Burkholderia pseudomallei 576]
 gi|238522657|gb|EEP86100.1| ribonuclease HII [Burkholderia mallei GB8 horse 4]
 gi|242139743|gb|EES26145.1| ribonuclease HII [Burkholderia pseudomallei 1106b]
          Length = 214

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 88/183 (48%), Positives = 124/183 (67%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            V G+DE GRG LAGPVV AA++LDP     G++DSK +S KKRE L+++I + A+  S+
Sbjct: 27  IVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAYALAYSV 86

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS + ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  ++ A++ GD++ 
Sbjct: 87  ASASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM-LAIRSEAIVGGDALV 145

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+++P YGFD+H GY T +H   ++E GP   HR +F P
Sbjct: 146 PSISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAP 205

Query: 204 LRN 206
           +R 
Sbjct: 206 VRE 208


>gi|257126162|ref|YP_003164276.1| ribonuclease H [Leptotrichia buccalis C-1013-b]
 gi|257050101|gb|ACV39285.1| Ribonuclease H [Leptotrichia buccalis C-1013-b]
          Length = 214

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 80/188 (42%), Positives = 113/188 (60%), Gaps = 3/188 (1%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKI 75
              EK    V G+DE GRG LAGPVV  A+I+  +      INDSKK++ KKRE L+E I
Sbjct: 15  EFDEKYNKIVVGVDEAGRGPLAGPVVAGAVIVIQDFPELQEINDSKKLTEKKRERLFEAI 74

Query: 76  TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIPEDLPCQA 133
             + I+ I  AS + ID+ NI  AT  A+  A+  +  +      L+DG  +  +   + 
Sbjct: 75  EKNCIVGIGIASEKEIDEMNILNATFLAMRRAINQVAEKSAFDIVLVDGNHLIREYEGEQ 134

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             ++KGDS SL+IA ASI+AKVTRDR++    K++P+Y F+ H GY T KH++++ EKG 
Sbjct: 135 ECIVKGDSKSLAIATASIVAKVTRDRMLCEIAKEFPEYQFEKHKGYGTKKHREILLEKGA 194

Query: 194 SCIHRLTF 201
              HR TF
Sbjct: 195 CRYHRKTF 202


>gi|113474350|ref|YP_720411.1| ribonuclease HII [Trichodesmium erythraeum IMS101]
 gi|123352730|sp|Q118Y6|RNH2_TRIEI RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|110165398|gb|ABG49938.1| RNase HII [Trichodesmium erythraeum IMS101]
          Length = 211

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 85/184 (46%), Positives = 109/184 (59%), Gaps = 5/184 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA-II 81
           AG+DEVGRGAL GPVV AA+IL  + +      G+ DSKK++ K+R  L   I + A   
Sbjct: 20  AGVDEVGRGALFGPVVAAAVILPEDVLDDLASTGVTDSKKLTEKRRCHLASLIRTVAWDC 79

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
            I  AS + ID+ NI KA+L A+  AV  L++ P   L+DG     DL      V+KGDS
Sbjct: 80  QIGIASVREIDRLNILKASLLAMKRAVLRLKLRPDLVLVDGNQEIRDLFIPQRTVVKGDS 139

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             L+IAAASI+AKV RD L+    KKYP Y    + GY T KH+Q I   G S  HRL+F
Sbjct: 140 KCLAIAAASIVAKVWRDTLIMRLAKKYPVYDLTKNKGYGTKKHKQGIINYGVSPQHRLSF 199

Query: 202 RPLR 205
            P +
Sbjct: 200 SPCQ 203


>gi|331703424|ref|YP_004400111.1| ribonuclease H II [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328801979|emb|CBW54133.1| Ribonuclease H II [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 207

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 75/204 (36%), Positives = 123/204 (60%), Gaps = 2/204 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           + +R  F+ + +  + N+  ++G DE GRG LAGP+VVA++IL P+     I DSKK++ 
Sbjct: 1   MIDRKLFD-DQIKLDHNITYLSGSDEAGRGCLAGPLVVASVILKPDYFNPLIKDSKKLNP 59

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           K R+ L+++I  + +   I   S + +D+ N  +A+L      + NL++ P   LIDG  
Sbjct: 60  KTRQILFDEIIKNCLDYQIIVISSKQVDELNPLQASLLGFKTTISNLKITPDLGLIDGNQ 119

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
                  +  ++IKGD  S SIA +SI+AKVTRD+++    + YP+YGF SH GY T +H
Sbjct: 120 NINLENIKTLSIIKGDDKSFSIACSSILAKVTRDKILDEYDQIYPNYGFKSHKGYCTKQH 179

Query: 185 QQVIKEKGPSCIHRLTFRPLRNLS 208
              I++ G   IHR +++P++ +S
Sbjct: 180 LLAIQKYGVLDIHRKSYKPIKKIS 203


>gi|158424022|ref|YP_001525314.1| ribonuclease HII [Azorhizobium caulinodans ORS 571]
 gi|189043564|sp|A8I6E6|RNH2_AZOC5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|158330911|dbj|BAF88396.1| ribonuclease H [Azorhizobium caulinodans ORS 571]
          Length = 259

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 94/195 (48%), Positives = 126/195 (64%), Gaps = 1/195 (0%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F+ E  V +  M PVAG DE GRG LAGPVV AA+ILDP  IP G++DSKK++  +RE 
Sbjct: 42  SFKRERAVLKSGMAPVAGADEAGRGPLAGPVVAAAVILDPKRIPAGLDDSKKLTATRREA 101

Query: 71  LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           L+++I ++A +S+  A    ID+ NI +ATL A+ +AV+ L   PR   +DG   P  L 
Sbjct: 102 LFDEICATAEVSVVMAPPSRIDRDNIRQATLWALANAVKGLPEDPRLVFVDGNDRPP-LE 160

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
           C+   VI GD +  SIAAASI+AKVTRDRLM      +P YGF+ H+GY TA+H   ++ 
Sbjct: 161 CEVEMVIGGDGLIASIAAASIVAKVTRDRLMVGLGAAFPGYGFERHMGYGTAEHGAALRR 220

Query: 191 KGPSCIHRLTFRPLR 205
            GP   HR +F P+R
Sbjct: 221 LGPCRHHRTSFAPVR 235


>gi|225849921|ref|YP_002730155.1| ribonuclease HII [Persephonella marina EX-H1]
 gi|225645751|gb|ACO03937.1| ribonuclease HII [Persephonella marina EX-H1]
          Length = 198

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 77/192 (40%), Positives = 108/192 (56%), Gaps = 5/192 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            ++E  +  K    +AGIDE GRG +AGPVV A++I   N  PF   DSKK++ K+REEL
Sbjct: 2   LQIEKELWSKGFKNIAGIDEAGRGPVAGPVVAASVIFPQNIEPFIFKDSKKLTKKQREEL 61

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           + +I   A+ + I    +  ID+ NI+ AT  A+  A+E++       + D        P
Sbjct: 62  FTQIKERALAVGIGIVDNSVIDRINIYNATKLAMKRAIEDMNHNFDYLITDYVKFD---P 118

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++ K D  SLS+AAASIIAKV RDR+M    K YP   FD H GY T  H++ I  
Sbjct: 119 YPHISLKKADEKSLSVAAASIIAKVFRDRIMEEFSKYYPH-SFDKHKGYLTELHREEIIR 177

Query: 191 KGPSCIHRLTFR 202
            G + IHR +F+
Sbjct: 178 YGLTPIHRKSFK 189


>gi|168216993|ref|ZP_02642618.1| ribonuclease HII [Clostridium perfringens NCTC 8239]
 gi|182380928|gb|EDT78407.1| ribonuclease HII [Clostridium perfringens NCTC 8239]
          Length = 272

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 89/189 (47%), Positives = 114/189 (60%), Gaps = 7/189 (3%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA 79
              VAG+DEVGRG LAGP+V AA+ILD    ++I   INDSKK+S  KREEL E I   A
Sbjct: 86  YKYVAGVDEVGRGPLAGPIVSAAVILDSSDLDDIILYINDSKKLSEHKREELSEIIKEKA 145

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           +  SIS    + ID+  I     D    A E L + P   L DG  + ++   +   VIK
Sbjct: 146 LSYSISMCDSKEIDEKGIGYCNNDVFIKACEGLSIKPDLVLSDGY-LIKNFNGENKHVIK 204

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD+ S  IA ASIIAKV RD +M+  HKKYP Y F+ +VGY T  H   +KE GP+ IHR
Sbjct: 205 GDTKSACIACASIIAKVYRDNIMKEYHKKYPQYDFEKNVGYGTKTHVDALKEVGPTEIHR 264

Query: 199 LTFRPLRNL 207
           ++F  L+N+
Sbjct: 265 MSF--LKNI 271


>gi|46398973|gb|AAS92172.1| RNase H ribonuclease [Legionella pneumophila]
 gi|46398975|gb|AAS92173.1| RNase H ribonuclease [Legionella pneumophila]
          Length = 191

 Score =  238 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 80/184 (43%), Positives = 110/184 (59%), Gaps = 4/184 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DEVGRG LAG VV AA+IL       G+ DSKK+S K+R  L  +I   A+  +   
Sbjct: 10  AGVDEVGRGPLAGAVVTAAVILKK--PIDGLTDSKKLSPKQRNLLAVRIKEEALAFAYGR 67

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A  + ID+ NIH ATL A+  AVE L + P + ++DG   P+ L     A+++GDS+   
Sbjct: 68  AEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVVVDGAFTPQ-LNIPCKAIVQGDSLIPE 126

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AKV RD  M    K YP YGF  H GY T  H++ +   GP  IHR ++ P+ 
Sbjct: 127 ISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYSPVA 186

Query: 206 NLSV 209
           +L +
Sbjct: 187 DLIL 190


>gi|163782691|ref|ZP_02177688.1| 5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882264|gb|EDP75771.1| 5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 190

 Score =  238 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 83/191 (43%), Positives = 117/191 (61%), Gaps = 5/191 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E     + +  VAG+DE GRG LAGPVV +A+IL P   PF   DSKK+S K+REELY
Sbjct: 3   EHEEKFWREGL-LVAGVDEAGRGPLAGPVVASAVILPPFTEPFLKGDSKKLSRKEREELY 61

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E I  +A+ +  +      ID+ NI++AT  A+  A+++L+      + D   + E    
Sbjct: 62  ELIKETALAVGTAVVDSAVIDRINIYQATKLAMKRALDDLKHPFDVVISDYVKLEE---F 118

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               ++KGD  SLS A AS++AKV RDR+M   H+ YP+Y F  H GYPT KH+++IK+ 
Sbjct: 119 NCLPLVKGDERSLSCACASVVAKVLRDRIMERFHEVYPEYEFVKHKGYPTKKHRELIKKF 178

Query: 192 GPSCIHRLTFR 202
           G + IHR +FR
Sbjct: 179 GITEIHRRSFR 189


>gi|16803313|ref|NP_464798.1| ribonuclease HII [Listeria monocytogenes EGD-e]
 gi|47097416|ref|ZP_00234965.1| ribonuclease HII [Listeria monocytogenes str. 1/2a F6854]
 gi|254829970|ref|ZP_05234625.1| ribonuclease HII [Listeria monocytogenes 10403S]
 gi|254898562|ref|ZP_05258486.1| ribonuclease HII [Listeria monocytogenes J0161]
 gi|254911948|ref|ZP_05261960.1| ribonuclease HII [Listeria monocytogenes J2818]
 gi|254936274|ref|ZP_05267971.1| rnhB [Listeria monocytogenes F6900]
 gi|284801658|ref|YP_003413523.1| hypothetical protein LM5578_1411 [Listeria monocytogenes 08-5578]
 gi|284994800|ref|YP_003416568.1| hypothetical protein LM5923_1364 [Listeria monocytogenes 08-5923]
 gi|38258623|sp|Q8Y7K4|RNH2_LISMO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|16410689|emb|CAC99351.1| rnhB [Listeria monocytogenes EGD-e]
 gi|47014215|gb|EAL05199.1| ribonuclease HII [Listeria monocytogenes str. 1/2a F6854]
 gi|258608863|gb|EEW21471.1| rnhB [Listeria monocytogenes F6900]
 gi|284057220|gb|ADB68161.1| hypothetical protein LM5578_1411 [Listeria monocytogenes 08-5578]
 gi|284060267|gb|ADB71206.1| hypothetical protein LM5923_1364 [Listeria monocytogenes 08-5923]
 gi|293589909|gb|EFF98243.1| ribonuclease HII [Listeria monocytogenes J2818]
          Length = 261

 Score =  237 bits (606), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 88/195 (45%), Positives = 121/195 (62%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E  + ++    +AG+DEVGRG LAGPVV AA+IL  +    GINDSK++S  KR+ L+
Sbjct: 60  QYETDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALF 119

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           EKI   AI I +    H  ID+ NI++AT  A+  A+  L   P   LID    P     
Sbjct: 120 EKIKKEAIAIGVGIIEHDVIDQVNIYEATKLAMCEALNQLTPEPDFVLIDAM--PLRYTE 177

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASIIAKVTRDRLM++  +KYP Y F +++GY T KH   +   
Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGTKKHLLGLDTI 237

Query: 192 GPSCIHRLTFRPLRN 206
           G   IHR++F P++ 
Sbjct: 238 GICPIHRMSFSPVKE 252


>gi|255037595|ref|YP_003088216.1| Ribonuclease H [Dyadobacter fermentans DSM 18053]
 gi|254950351|gb|ACT95051.1| Ribonuclease H [Dyadobacter fermentans DSM 18053]
          Length = 208

 Score =  237 bits (606), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 76/181 (41%), Positives = 112/181 (61%), Gaps = 1/181 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY-EKITSSAIISISS 85
           AG+DEVGRG LAGPVV AA+IL  +     +NDSK+++  +R EL  E I  S   +++ 
Sbjct: 13  AGLDEVGRGCLAGPVVAAAVILPRDYKHSFLNDSKQLTKAQRLELEKEIIRESVCWAVAE 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
             +  ID+ NI KA+  A++ AV+ L+V P   L+DG             +IKGD+  LS
Sbjct: 73  VDNLEIDRINILKASFLAMHRAVDKLRVRPEHLLVDGNRFTPYPMIPHTCIIKGDAHYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           IAAAS++AK  RD LM    +++P YG++ +VGYPT  H++ I   GP   HR+TF+ ++
Sbjct: 133 IAAASVLAKNYRDELMSNLSRQFPHYGWEQNVGYPTIHHRKAIVLHGPCSYHRMTFKLIK 192

Query: 206 N 206
           +
Sbjct: 193 S 193


>gi|325285587|ref|YP_004261377.1| Ribonuclease H [Cellulophaga lytica DSM 7489]
 gi|324321041|gb|ADY28506.1| Ribonuclease H [Cellulophaga lytica DSM 7489]
          Length = 208

 Score =  237 bits (606), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 73/178 (41%), Positives = 103/178 (57%), Gaps = 1/178 (0%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSA 86
           G DE GRG LAGPV  AAIIL  N     +NDSK +S KKRE L   I   AI   ++  
Sbjct: 23  GTDEAGRGCLAGPVTAAAIILPENFKNDILNDSKLLSEKKRELLKPIIEEQAICYGVTHI 82

Query: 87  SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSI 146
             + ID+ NI  A++ A++ +++ L   P   ++DG         +   +IKGDS  LSI
Sbjct: 83  YPKKIDEINILNASILAMHKSIDKLTTKPEFIIVDGNRFKPYKKIKHECIIKGDSKFLSI 142

Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           AAAS++AK  RD  M   HK++P Y +  + GYPT +H++ I+E G +  HR +F+ L
Sbjct: 143 AAASVLAKTYRDAYMEKIHKEFPMYNWKKNKGYPTKEHREAIREFGLTKYHRKSFKQL 200


>gi|310828460|ref|YP_003960817.1| hypothetical protein ELI_2873 [Eubacterium limosum KIST612]
 gi|308740194|gb|ADO37854.1| hypothetical protein ELI_2873 [Eubacterium limosum KIST612]
          Length = 262

 Score =  237 bits (606), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 82/196 (41%), Positives = 118/196 (60%), Gaps = 5/196 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
            +E     +    + G DEVGRG LAGPVV AA+IL  ++    ++DSKK+S K RE L 
Sbjct: 70  AVEEGFYGEGFQRIGGSDEVGRGPLAGPVVCAAVILPRDSAILHVDDSKKLSAKMREALD 129

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I + A+ ++I   + + ID  NI +AT  A+  AV  L   P   LID  +I  +   
Sbjct: 130 VQIRAEALSVAIGLRTPEQIDALNILEATKSAMSEAVSQLDPQPDLMLIDALTI--ETQA 187

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   ++ GD+   SIAAASI+AKV RD+LM   H++YP+YGFD +VGY TA+H   IK+ 
Sbjct: 188 EVRGIVHGDATCYSIAAASIVAKVYRDKLMHAYHEQYPEYGFDRNVGYGTAEHIAAIKKY 247

Query: 192 GPSCIHRLTFRPLRNL 207
           G + IHR +F  ++N 
Sbjct: 248 GLTPIHRRSF--VKNF 261


>gi|260425244|ref|ZP_05779224.1| ribonuclease HII [Citreicella sp. SE45]
 gi|260423184|gb|EEX16434.1| ribonuclease HII [Citreicella sp. SE45]
          Length = 191

 Score =  237 bits (606), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 86/181 (47%), Positives = 126/181 (69%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86
           AG+DEVGRG LAGPVV AA++LDP  +P G+NDSKK++ K+R  L   +   A +SI SA
Sbjct: 2   AGVDEVGRGPLAGPVVAAAVVLDPRWVPPGLNDSKKLTAKRRARLSAWLWECAEVSIGSA 61

Query: 87  SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSI 146
           S + ID+ NI +A+L A++ AV  L+  P   L+DGR +P  LPC+A  +IKGD  S+SI
Sbjct: 62  SVEEIDQLNILQASLLAMHRAVTGLENAPGHVLVDGRFLPPQLPCEATPIIKGDGRSVSI 121

Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           AAAS++AK+ RDRLMR   + +P YG++++ GY +  H+  ++  G +  HR +F+P+ N
Sbjct: 122 AAASVVAKIWRDRLMRDLAQHHPGYGWETNAGYGSKSHKLALQNLGVTPHHRRSFKPIHN 181

Query: 207 L 207
           +
Sbjct: 182 I 182


>gi|53719754|ref|YP_108740.1| ribonuclease HII [Burkholderia pseudomallei K96243]
 gi|126441923|ref|YP_001059454.1| ribonuclease HII [Burkholderia pseudomallei 668]
 gi|237812793|ref|YP_002897244.1| ribonuclease HII [Burkholderia pseudomallei MSHR346]
 gi|254197441|ref|ZP_04903863.1| ribonuclease HII [Burkholderia pseudomallei S13]
 gi|81379508|sp|Q63T26|RNH2_BURPS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166225177|sp|A3NAT3|RNH2_BURP6 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|52210168|emb|CAH36147.1| ribonuclease HII [Burkholderia pseudomallei K96243]
 gi|126221416|gb|ABN84922.1| ribonuclease HII [Burkholderia pseudomallei 668]
 gi|169654182|gb|EDS86875.1| ribonuclease HII [Burkholderia pseudomallei S13]
 gi|237504589|gb|ACQ96907.1| ribonuclease HII [Burkholderia pseudomallei MSHR346]
          Length = 214

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 88/183 (48%), Positives = 123/183 (67%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            V G+DE GRG LAGPVV AA++LDP     G++DSK +S KKRE L+++I   A+  S+
Sbjct: 27  IVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVVHALAYSV 86

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS + ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  ++ A++ GD++ 
Sbjct: 87  ASASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM-LAIRSEAIVGGDALV 145

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+++P YGFD+H GY T +H   ++E GP   HR +F P
Sbjct: 146 PSISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAP 205

Query: 204 LRN 206
           +R 
Sbjct: 206 VRE 208


>gi|300087868|ref|YP_003758390.1| ribonuclease H [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527601|gb|ADJ26069.1| Ribonuclease H [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 212

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 82/200 (41%), Positives = 114/200 (57%), Gaps = 5/200 (2%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN---IPFGINDSKKISHK 66
           P F  E+ +       +AG+DE GRGALAGPVV AA+IL           + DSK +S  
Sbjct: 8   PGFREESKLHGNGYRLIAGVDEAGRGALAGPVVAAAVILGRRRRSGWLKAVRDSKLLSPA 67

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
            R+ LY  IT +A+   +   SH +ID+H I   T  A+  A+ENL   P + LID  ++
Sbjct: 68  NRDRLYGLITENALSWGVGVVSHHFIDRHGIVPGTRLAMALALENLDPSPEALLIDYLTL 127

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  +      +I GD++ +SIA AS+IAKVTRDRLM     +YP Y F  H GY TA+H 
Sbjct: 128 PA-VTLPQKGIIDGDAVCVSIACASVIAKVTRDRLMIGLDNRYPGYRFGRHKGYGTAEHL 186

Query: 186 QVIKEKGPSCIHRLTFRPLR 205
             ++  GP  +HR +F P++
Sbjct: 187 DCLERLGPCSVHRRSFAPVQ 206


>gi|73662831|ref|YP_301612.1| ribonuclease HII [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|97189330|sp|Q49X31|RNH2_STAS1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|72495346|dbj|BAE18667.1| ribonuclease HII [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 256

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 83/197 (42%), Positives = 124/197 (62%), Gaps = 4/197 (2%)

Query: 13  ELEAM-VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           E E   + E     + GIDEVGRG LAGPVV  A+IL+ N+   G+NDSKK+S K+R  +
Sbjct: 60  EFENSILAENPDALICGIDEVGRGPLAGPVVTCAVILNKNHHFTGLNDSKKLSAKQRHSI 119

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
             K+ +     +   AS + ID+ NI++AT  A++ A+E L++ P   L+D  ++  D+ 
Sbjct: 120 ESKLLNDVYAYAYGYASVEEIDEINIYEATKLAMHRAIEGLRIKPTHLLVDAMTL--DID 177

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ S+SIAAAS++AK  RD+ MR   +KYP Y F+++VGY T +H   IK+
Sbjct: 178 IPQTSLIKGDAKSVSIAAASVLAKEHRDQYMRDLGRKYPGYSFENNVGYGTQQHLDGIKK 237

Query: 191 KGPSCIHRLTFRPLRNL 207
            G    HR TF P+++L
Sbjct: 238 YGILNEHRKTFEPIKSL 254


>gi|326336306|ref|ZP_08202477.1| ribonuclease HII [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691480|gb|EGD33448.1| ribonuclease HII [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 197

 Score =  237 bits (605), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 69/179 (38%), Positives = 102/179 (56%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL  +     +NDSK+++ K+R EL   I   A+  ++  
Sbjct: 11  AGTDEAGRGCLAGPVTAAAVILPEDFYHPLLNDSKQMTEKQRNELRSIIEMQALSYAVVH 70

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S Q ID+ NI  A+++A+  A++ L + P   ++DG              +KGD+  + 
Sbjct: 71  LSPQRIDQINILNASIEAMQQALDKLSLTPEFIVVDGNRFKPYKEIPYSCQVKGDARFMR 130

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAAS++AK  RD  M   HK++P Y +D + GYPT +H+  I E G    HR TF+ +
Sbjct: 131 IAAASVLAKTHRDAYMESLHKQFPMYHWDKNKGYPTREHRAAILEFGACEYHRKTFQLI 189


>gi|76809916|ref|YP_333960.1| ribonuclease HII [Burkholderia pseudomallei 1710b]
 gi|254189278|ref|ZP_04895789.1| ribonuclease HII [Burkholderia pseudomallei Pasteur 52237]
 gi|254259229|ref|ZP_04950283.1| ribonuclease HII [Burkholderia pseudomallei 1710a]
 gi|97182323|sp|Q3JR43|RNH2_BURP1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|76579369|gb|ABA48844.1| ribonuclease HII [Burkholderia pseudomallei 1710b]
 gi|157936957|gb|EDO92627.1| ribonuclease HII [Burkholderia pseudomallei Pasteur 52237]
 gi|254217918|gb|EET07302.1| ribonuclease HII [Burkholderia pseudomallei 1710a]
          Length = 214

 Score =  237 bits (605), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 88/183 (48%), Positives = 123/183 (67%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            V G+DE GRG LAGPVV AA++LDP     G++DSK +S KKRE L+++I + A+  S+
Sbjct: 27  IVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAHALAYSV 86

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS + ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  ++ A++ GD++ 
Sbjct: 87  ASASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM-LAIRSEAIVGGDALV 145

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR +   H+++P YGFD+H GY T +H   ++E GP   HR +F P
Sbjct: 146 PSISAASILAKVTRDRTLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAP 205

Query: 204 LRN 206
           +R 
Sbjct: 206 VRE 208


>gi|284040939|ref|YP_003390869.1| ribonuclease H [Spirosoma linguale DSM 74]
 gi|283820232|gb|ADB42070.1| Ribonuclease H [Spirosoma linguale DSM 74]
          Length = 191

 Score =  237 bits (605), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 81/179 (45%), Positives = 114/179 (63%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DEVGRG LAGPVV AA+IL  +     +NDSK++SH++RE L + I   AI  +++ 
Sbjct: 13  AGLDEVGRGCLAGPVVAAAVILPKDYTHPILNDSKQLSHRQRELLKQDIERDAIAWAVAE 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            SH+ ID+ NI KA+  A++ AV+ L V P   L+DG             +IKGD+  LS
Sbjct: 73  VSHEDIDRINILKASFLAMHRAVDALTVKPEHLLVDGNRFVPYPMTPHTCIIKGDAHYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAAS++AK  RD LM     ++P YG+  +VGYPT  H+  I++ GP+  HR++FR L
Sbjct: 133 IAAASVLAKTYRDDLMAQLGLEFPAYGWAQNVGYPTPIHRAAIRQFGPTKYHRMSFRLL 191


>gi|307610074|emb|CBW99613.1| hypothetical protein LPW_13821 [Legionella pneumophila 130b]
          Length = 191

 Score =  237 bits (605), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 81/182 (44%), Positives = 109/182 (59%), Gaps = 4/182 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DEVGRG LAG VV AA+IL       G+ DSKK+S K+R  L  +I   A+  +   
Sbjct: 10  AGVDEVGRGPLAGAVVTAAVILKK--PIDGLTDSKKLSPKQRNLLAIRIKEEALAFAYGR 67

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A  + ID+ NIH ATL A+  AVE L + P + L+DG   P+ L     A+++GDS+   
Sbjct: 68  AEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVLVDGAFTPQ-LNIPCKAIVQGDSLIPE 126

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AKV RD  M    K YP YGF  H GY T  H++ +   GP  IHR ++ P+ 
Sbjct: 127 ISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYSPVA 186

Query: 206 NL 207
           +L
Sbjct: 187 DL 188


>gi|167000564|ref|ZP_02266375.1| ribonuclease HII [Burkholderia mallei PRL-20]
 gi|243063495|gb|EES45681.1| ribonuclease HII [Burkholderia mallei PRL-20]
          Length = 214

 Score =  237 bits (605), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 88/183 (48%), Positives = 124/183 (67%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            V G+DE GRG LAGPVV AA++LDP     G++DSK +S KKRE L+++I + A+  S+
Sbjct: 27  IVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIAAYALAYSV 86

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS + ID  NI  AT+ A+  AVE L V+P  A IDG   P  L  ++ A++ GD++ 
Sbjct: 87  ASASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM-LAIRSEAIVGGDALV 145

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+++P YGFD+H GY T +H   ++E GP   HR +F P
Sbjct: 146 PSISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAP 205

Query: 204 LRN 206
           +R 
Sbjct: 206 VRE 208


>gi|24373211|ref|NP_717254.1| ribonuclease HII [Shewanella oneidensis MR-1]
 gi|39932406|sp|Q8EGG1|RNH2_SHEON RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|24347435|gb|AAN54698.1|AE015610_2 ribonuclease HII [Shewanella oneidensis MR-1]
          Length = 209

 Score =  237 bits (605), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 87/188 (46%), Positives = 116/188 (61%), Gaps = 5/188 (2%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDPN    G+NDSKK++ K+RE L+++I   A+   +
Sbjct: 19  LVAGVDEVGRGPLVGDVVTAAVILDPNRPILGLNDSKKLTEKRREALFDEICEKALSFHV 78

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP----EDLPCQAFAVIKG 139
             AS   ID+ NI  AT+ A+  AV  L++ P   L+DG   P    + L   + ++IKG
Sbjct: 79  GRASPAEIDELNILHATMLAMQRAVSGLKLTPALVLVDGNRSPAFTHQGLSLASHSIIKG 138

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D +  SI+AASIIAKVTRDR M      YP YGF  H GYPT  H + I E G    +R 
Sbjct: 139 DGLIASISAASIIAKVTRDREMDALDAAYPQYGFAKHKGYPTKAHFEAIAEHGVFDQYRK 198

Query: 200 TFRPLRNL 207
           +F+P++ L
Sbjct: 199 SFKPVKAL 206


>gi|256831070|ref|YP_003159798.1| Ribonuclease H [Desulfomicrobium baculatum DSM 4028]
 gi|256580246|gb|ACU91382.1| Ribonuclease H [Desulfomicrobium baculatum DSM 4028]
          Length = 207

 Score =  237 bits (605), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 75/180 (41%), Positives = 107/180 (59%), Gaps = 4/180 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG LAGPVV  A+IL P+    G+ DSKK+S ++R  L + I + A+  ++  
Sbjct: 16  AGVDEAGRGCLAGPVVAGAVILPPDFDLPGLTDSKKLSSRRRVVLAQAIKAQAVSWALGF 75

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPEDLPCQAFAVIKGDSISL 144
           +    ID+ NI +A+L A+  AVE L+V P   L+DG    P  LP     V+ GD++  
Sbjct: 76  SWPGEIDRINILQASLAAMARAVEALRVSPGLVLVDGNQRFPSSLP--QKTVVGGDALHP 133

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I+AASI+AK  RD L+    ++YP YG   H GY T  H   ++  GPS  HR++FR +
Sbjct: 134 CISAASILAKTFRDDLLLCMDQRYPGYGLAVHKGYGTKAHLDALRRLGPSPAHRVSFRGV 193


>gi|54294259|ref|YP_126674.1| hypothetical protein lpl1324 [Legionella pneumophila str. Lens]
 gi|81368717|sp|Q5WWX5|RNH2_LEGPL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|53754091|emb|CAH15564.1| hypothetical protein lpl1324 [Legionella pneumophila str. Lens]
          Length = 191

 Score =  237 bits (605), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 81/182 (44%), Positives = 109/182 (59%), Gaps = 4/182 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DEVGRG LAG VV AA+IL       G+ DSKK+S K+R  L  +I   A+  +   
Sbjct: 10  AGVDEVGRGPLAGAVVTAAVILKK--PIDGLTDSKKLSPKQRNLLAIRIKEEALAFAYGR 67

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A  + ID+ NIH ATL A+  AVE L + P + L+DG   P+ L     A+++GDS+   
Sbjct: 68  AEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVLVDGAFTPQ-LNMPCKAIVQGDSLIPE 126

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AKV RD  M    K YP YGF  H GY T  H++ +   GP  IHR ++ P+ 
Sbjct: 127 ISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYSPVA 186

Query: 206 NL 207
           +L
Sbjct: 187 DL 188


>gi|46398977|gb|AAS92174.1| RNase H ribonuclease [Legionella pneumophila]
          Length = 191

 Score =  237 bits (605), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 80/184 (43%), Positives = 110/184 (59%), Gaps = 4/184 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DEVGRG LAG VV AA+IL       G+ DSKK+S K+R  L  +I   A+  +   
Sbjct: 10  AGVDEVGRGPLAGAVVTAAVILKK--PIDGLTDSKKLSPKQRNLLAIRIKEEALAFAYGR 67

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A  + ID+ NIH ATL A+  AVE L + P + ++DG   P+ L     A+++GDS+   
Sbjct: 68  AEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVVVDGAFTPQ-LNIPCKAIVQGDSLIPE 126

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AKV RD  M    K YP YGF  H GY T  H++ +   GP  IHR ++ P+ 
Sbjct: 127 ISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYSPVA 186

Query: 206 NLSV 209
           +L +
Sbjct: 187 DLIL 190


>gi|315648159|ref|ZP_07901260.1| ribonuclease HII [Paenibacillus vortex V453]
 gi|315276805|gb|EFU40148.1| ribonuclease HII [Paenibacillus vortex V453]
          Length = 205

 Score =  237 bits (605), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 87/198 (43%), Positives = 118/198 (59%), Gaps = 7/198 (3%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E          +AGIDEVGRG L G VV AA+IL    +  GI+DSKK+S KKRE LY+
Sbjct: 7   YERDYWNH-YIHIAGIDEVGRGCLFGDVVAAAVILPEGLVIEGIDDSKKLSAKKRETLYD 65

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   A+ + +     + ID+ NI +A   A+  AVE L V P+  L+D   +  D+P  
Sbjct: 66  LIMEDALAVGVGLVDAETIDRINIKQAARLAMKMAVEQLAVTPQFLLVDAEKVDCDIP-- 123

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMR-IAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
             A+IKGD+ S SIAAASIIAKVTRDRL       +YP+YG   H GY T  H++ ++  
Sbjct: 124 QRAIIKGDANSQSIAAASIIAKVTRDRLCEREWEARYPEYGIAVHKGYATKFHREQLQLH 183

Query: 192 GPSCIHRLTFRPLRNLSV 209
           GP+ +HR +F  L+N+ +
Sbjct: 184 GPTSMHRRSF--LKNMEI 199


>gi|110801760|ref|YP_698993.1| ribonuclease HII [Clostridium perfringens SM101]
 gi|123047313|sp|Q0SSB4|RNH2_CLOPS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|110682261|gb|ABG85631.1| ribonuclease HII [Clostridium perfringens SM101]
          Length = 272

 Score =  237 bits (605), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 88/189 (46%), Positives = 113/189 (59%), Gaps = 7/189 (3%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA 79
              VAG+DEVGRG LAGP+V AA+ILD    ++I   INDSKK+S  KREEL E I   A
Sbjct: 86  YKYVAGVDEVGRGPLAGPIVSAAVILDSSNLDDIILYINDSKKLSEHKREELSEIIKEKA 145

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           +  SIS    + ID+  I          A E L + P   L DG  + ++   +   VIK
Sbjct: 146 LSYSISMCDSKEIDEKGIGYCNNHVFIKACEGLNIKPDLVLSDGY-LIKNFNGENKHVIK 204

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD+ S  IA ASIIAKV RD +M+  HKKYP Y F+ +VGY T  H   +KE GP+ IHR
Sbjct: 205 GDTKSACIACASIIAKVYRDNIMKEYHKKYPQYDFEKNVGYGTKTHVDALKEVGPTEIHR 264

Query: 199 LTFRPLRNL 207
           ++F  L+N+
Sbjct: 265 MSF--LKNI 271


>gi|328544974|ref|YP_004305083.1| ribonuclease HII [polymorphum gilvum SL003B-26A1]
 gi|326414716|gb|ADZ71779.1| Ribonuclease HII [Polymorphum gilvum SL003B-26A1]
          Length = 219

 Score =  237 bits (605), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 127/202 (62%), Gaps = 2/202 (0%)

Query: 5   SIPERPHFE--LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62
            +P  P F+  LE          +AG+DE GRG  AGPVV AA++LD   +P G++DSK+
Sbjct: 11  DLPFGPSFDATLEERHAALFGGRLAGVDEAGRGPWAGPVVTAAVVLDYRRLPAGLDDSKR 70

Query: 63  ISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           +S  +RE LYE+I +SA ++++SA    ID+ NI  ATL A+  AV+ L +     LIDG
Sbjct: 71  LSEVQREALYEEICASACVAVASACPTSIDRDNIRTATLAAMTRAVDALALTAGIVLIDG 130

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
           R +P  L  +  A++KGD   L++AAASI+AKVTRDR+MR+     P YGF +H GY   
Sbjct: 131 RDVPPGLAGRGQALVKGDQRCLAVAAASIVAKVTRDRMMRLLDGCCPGYGFSAHKGYGVP 190

Query: 183 KHQQVIKEKGPSCIHRLTFRPL 204
            H Q +   GPS  HRL+F+P+
Sbjct: 191 AHAQALLRLGPSPHHRLSFKPV 212


>gi|168207943|ref|ZP_02633948.1| ribonuclease HII [Clostridium perfringens E str. JGS1987]
 gi|170660752|gb|EDT13435.1| ribonuclease HII [Clostridium perfringens E str. JGS1987]
          Length = 272

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 88/189 (46%), Positives = 113/189 (59%), Gaps = 7/189 (3%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA 79
              VAG+DEVGRG LAGP+V AA+ILD    ++I   INDSKK+S  KREEL E I   A
Sbjct: 86  YKYVAGVDEVGRGPLAGPIVSAAVILDSSDLDDIILYINDSKKLSEHKREELSEIIKEKA 145

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           +  SIS    + ID+  I          A E L + P   L DG  + ++   +   VIK
Sbjct: 146 LSYSISMCDSKEIDEKGIGYCNNHVFIKACEGLSIKPDLVLSDGY-LIKNFNGENKHVIK 204

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD+ S  IA ASIIAKV RD +M+  HKKYP Y F+ +VGY T  H   +KE GP+ IHR
Sbjct: 205 GDTKSACIACASIIAKVYRDNIMKEYHKKYPQYDFEKNVGYGTKTHVDALKEVGPTEIHR 264

Query: 199 LTFRPLRNL 207
           ++F  L+N+
Sbjct: 265 MSF--LKNI 271


>gi|83647902|ref|YP_436337.1| ribonuclease HII [Hahella chejuensis KCTC 2396]
 gi|97182857|sp|Q2SBR2|RNH2_HAHCH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|83635945|gb|ABC31912.1| Ribonuclease HII [Hahella chejuensis KCTC 2396]
          Length = 204

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 88/185 (47%), Positives = 121/185 (65%), Gaps = 2/185 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG LAGPVV AA+IL+P     G+NDSKK+SH++R  L ++I   A+  +
Sbjct: 17  QLVAGVDEVGRGPLAGPVVAAAVILNPEKPIEGLNDSKKLSHRQRVALSQEIREKALAWA 76

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
              A+ + ID+ NI +A+L A+  AV  LQV P  ALIDG  IP+ L   A A++KGDS 
Sbjct: 77  TGWATVEEIDQINILQASLLAMQRAVAGLQVAPDLALIDGNKIPK-LDMPAEAIVKGDSK 135

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +IAAASI+AKV RD  +      +P YG   H GYPTA+H   ++E G + IHR +++
Sbjct: 136 VAAIAAASILAKVERDEELDRLDVIFPGYGLAGHKGYPTAQHLSALRELGVTDIHRRSYK 195

Query: 203 PLRNL 207
           P++ L
Sbjct: 196 PVQQL 200


>gi|293605073|ref|ZP_06687465.1| ribonuclease HII [Achromobacter piechaudii ATCC 43553]
 gi|292816476|gb|EFF75565.1| ribonuclease HII [Achromobacter piechaudii ATCC 43553]
          Length = 202

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 81/184 (44%), Positives = 110/184 (59%), Gaps = 2/184 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG LAG V  AA+IL+P     G+ DSK +    RE L  +I   A+   I+S
Sbjct: 18  AGVDEAGRGPLAGAVYAAAVILNPARPIDGLADSKVLKAATREALALEIQEHALAWCIAS 77

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           AS Q ID  NI +AT+ A+  AV+ L V  + AL+DG   P+ L C    VIKGD++  +
Sbjct: 78  ASVQEIDTLNILRATMLAMQRAVQGLSVPAQLALVDGNQAPK-LACTVQTVIKGDALVPA 136

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AK  RD  +   H  YP Y F+ H GY TA H Q+++E GP   HR +F P++
Sbjct: 137 ISAASILAKTARDADLVRLHGLYPQYAFNQHKGYGTALHLQMLREHGPCAEHRRSFAPIK 196

Query: 206 NLSV 209
              +
Sbjct: 197 AFGL 200


>gi|83816348|ref|YP_446472.1| ribonuclease HII [Salinibacter ruber DSM 13855]
 gi|97189257|sp|Q2S009|RNH2_SALRD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|83757742|gb|ABC45855.1| ribonuclease HII [Salinibacter ruber DSM 13855]
          Length = 200

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 79/199 (39%), Positives = 108/199 (54%), Gaps = 4/199 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  +       VAG+DE GRG LAGPVV AA+I+ P      I DSK +S  +R + 
Sbjct: 2   LSHERRLWADGYERVAGLDEAGRGCLAGPVVAAAVIMPPQVEITAIQDSKALSEGQRLDA 61

Query: 72  YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL- 129
              I   A+  SI+  S   ID  NI +A L+A+  A    +  P   L+DG     +L 
Sbjct: 62  RATIEDEAVAASIARCSPTEIDDRNILQAALEAMRRAASGCRPPPDFVLVDGNQWDRNLV 121

Query: 130 --PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
             P     V+KGD+ S SIAAASI+AK  RD LMR  H+ +P+Y + S+VGYPT +H   
Sbjct: 122 DAPWPHETVVKGDAKSQSIAAASILAKTERDALMRDLHEAHPEYDWASNVGYPTQQHYDA 181

Query: 188 IKEKGPSCIHRLTFRPLRN 206
           ++E G +  HR +F   R+
Sbjct: 182 LREHGATPHHRQSFTLFRD 200


>gi|298207692|ref|YP_003715871.1| putative ribonuclease HII [Croceibacter atlanticus HTCC2559]
 gi|83850329|gb|EAP88197.1| putative ribonuclease HII [Croceibacter atlanticus HTCC2559]
          Length = 199

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 70/179 (39%), Positives = 101/179 (56%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
            G DE GRG LAGPV  AA+IL  +     +NDSKK++HK+R+ L   I + A+  S+  
Sbjct: 13  CGTDEAGRGCLAGPVTAAAVILPQDFNNPVLNDSKKLTHKQRDLLRPIIETEAVSFSVIH 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
                IDK NI  A++  +  ++ +LQ  P    +DG             +IKGD   L+
Sbjct: 73  IDIDTIDKINILNASILGMQESIRSLQTKPEHIAVDGNRFKPCDDIPYKCIIKGDGKYLN 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IA+ASI+AK  RD  M   H+++P Y +  + GYPT +H++ I+  GPS  HR +FR L
Sbjct: 133 IASASILAKTYRDNYMEKIHEEFPMYNWKQNKGYPTKEHREAIRTHGPSKYHRKSFRLL 191


>gi|30249669|ref|NP_841739.1| ribonuclease HII and HIII [Nitrosomonas europaea ATCC 19718]
 gi|39932358|sp|Q82U06|RNH2_NITEU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|30180706|emb|CAD85618.1| Ribonuclease HII and HIII [Nitrosomonas europaea ATCC 19718]
          Length = 217

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 82/187 (43%), Positives = 116/187 (62%), Gaps = 3/187 (1%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78
             ++   + G+DE GRG LAGPV  A ++LDP ++  G+ DSK++S KKR  L ++I   
Sbjct: 12  YAQDGKVIYGVDEAGRGPLAGPVYAACVVLDPADVIEGLADSKQLSEKKRISLADQIKQR 71

Query: 79  A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-ALIDGRSIPEDLPCQAFAV 136
           A   +I+SAS + ID+ NI +A+L A+  AV +L+ I  +  L+DG   P  L C+   V
Sbjct: 72  ARAWAIASASVEEIDRLNILQASLLAMQRAVVSLRPISNALVLVDGNHAPR-LDCEVQTV 130

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           I+GDS+   I+AASI+AK  RD  M   H+ YP YGFD H GYPT  H + I+  G + I
Sbjct: 131 IRGDSLVAEISAASILAKTARDIEMLRLHEAYPVYGFDRHKGYPTKAHLEAIRLHGITDI 190

Query: 197 HRLTFRP 203
           HR +F P
Sbjct: 191 HRRSFAP 197


>gi|254828636|ref|ZP_05233323.1| rnhB [Listeria monocytogenes FSL N3-165]
 gi|258601035|gb|EEW14360.1| rnhB [Listeria monocytogenes FSL N3-165]
          Length = 261

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 88/195 (45%), Positives = 120/195 (61%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E  + ++    +AG+DEVGRG LAGPVV AA+IL  +    GINDSK++S  KR+ L+
Sbjct: 60  QYETDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALF 119

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           EKI   AI I +    H  ID+ NI++AT  A+  A+  L   P   LID    P     
Sbjct: 120 EKIKKEAIAIGVGIIEHDVIDQVNIYEATKLAMCEALNQLTPEPDFVLIDAM--PLRYTE 177

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASIIAKVTRDRLM +  +KYP Y F +++GY T KH   +   
Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRLMLMYDEKYPGYDFANNMGYGTKKHLLGLDTI 237

Query: 192 GPSCIHRLTFRPLRN 206
           G   IHR++F P++ 
Sbjct: 238 GICPIHRMSFSPVKE 252


>gi|168210661|ref|ZP_02636286.1| ribonuclease HII [Clostridium perfringens B str. ATCC 3626]
 gi|170711299|gb|EDT23481.1| ribonuclease HII [Clostridium perfringens B str. ATCC 3626]
          Length = 272

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 88/189 (46%), Positives = 113/189 (59%), Gaps = 7/189 (3%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA 79
              VAG+DEVGRG LAGP+V AA+ILD    ++I   INDSKK+S  KREEL E I   A
Sbjct: 86  YKYVAGVDEVGRGPLAGPIVSAAVILDSSDLDDIILYINDSKKLSEHKREELSEIIKEKA 145

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           +  SIS    + ID+  I          A E L + P   L DG  + ++   +   VIK
Sbjct: 146 LSYSISMCDSKEIDEKGIGYCNNHVFIKACEGLSIKPDLVLSDGY-LIKNFNGENKHVIK 204

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD+ S  IA ASIIAKV RD +M+  HKKYP Y F+ +VGY T  H   +KE GP+ IHR
Sbjct: 205 GDTKSACIACASIIAKVYRDNIMKEYHKKYPQYDFEKNVGYGTKTHVDALKEVGPTEIHR 264

Query: 199 LTFRPLRNL 207
           ++F  L+N+
Sbjct: 265 MSF--LKNI 271


>gi|119713524|gb|ABL97577.1| ribonuclease [uncultured marine bacterium EB0_35D03]
          Length = 191

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 80/192 (41%), Positives = 107/192 (55%), Gaps = 11/192 (5%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
             + G+DE GRG L G V+ AA+    N    G+ DSKK++ KKRE  Y +I      S+
Sbjct: 1   MIIIGVDEAGRGPLVGSVIAAAVAFPENFYLEGLTDSKKLTEKKRESFYSQIVQKCNWSV 60

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPR--------SALIDGRSIPEDLPCQAFA 135
             AS   ID+ NI +AT+ A+  AV NLQ+             L+DG   P+   CQ  A
Sbjct: 61  GEASSIEIDQINILQATMLAMKRAVNNLQLELSISDKDDQFKVLVDGNQCPDVGNCQ--A 118

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           ++KGD I   I+AAS+IAKVTRDR M+     YP YGF  H GY T +H   + + GP  
Sbjct: 119 IVKGDLIEPVISAASVIAKVTRDRQMKELDLNYPGYGFAKHKGYGTREHLDALNKFGPIK 178

Query: 196 -IHRLTFRPLRN 206
            IHR +F P++N
Sbjct: 179 GIHRASFAPIKN 190


>gi|253999106|ref|YP_003051169.1| Ribonuclease H [Methylovorus sp. SIP3-4]
 gi|253985785|gb|ACT50642.1| Ribonuclease H [Methylovorus sp. SIP3-4]
          Length = 188

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 78/184 (42%), Positives = 114/184 (61%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            + G+DE GRG LAG V  AA+IL+P     G+ DSKK+S KKR+ L  +I   A+  +I
Sbjct: 5   IICGVDEAGRGPLAGAVYAAAVILNPARPIPGLADSKKLSEKKRDALTLEIKQHALAWAI 64

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + ++ + ID  NI +A+L A+  AVE L + P   L+DG   PE +   A A++ GDS  
Sbjct: 65  AHSTVEEIDSINILQASLLAMRRAVEQLGIQPHKLLVDGLHCPE-VSMVAEAIVDGDSKV 123

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AK  RD+ +    ++YP YGF  H GYPTA H  ++ E G S +HR ++ P
Sbjct: 124 EAISAASILAKTARDKELYALDQQYPHYGFAKHKGYPTAFHMAMLIEHGVSPVHRRSYAP 183

Query: 204 LRNL 207
           ++ L
Sbjct: 184 VKKL 187


>gi|168215356|ref|ZP_02640981.1| ribonuclease HII [Clostridium perfringens CPE str. F4969]
 gi|170713265|gb|EDT25447.1| ribonuclease HII [Clostridium perfringens CPE str. F4969]
          Length = 272

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 89/189 (47%), Positives = 114/189 (60%), Gaps = 7/189 (3%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA 79
              VAG+DEVGRG LAGP+V AA+ILD    ++I   INDSKK+S  KREEL E I   A
Sbjct: 86  YKYVAGVDEVGRGPLAGPIVSAAVILDSSDLDDIILYINDSKKLSEHKREELSEIIKEKA 145

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           +  SIS    + ID+  I     D    A E L + P   L DG  + ++   +   VIK
Sbjct: 146 LSYSISMCDSKEIDEKGIGYCNNDVFIKACEGLSIKPDLVLSDGY-LIKNFNGENKHVIK 204

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD+ S  IA ASIIAKV RD +M+  HKKYP Y F+ +VGY T  H   +KE GP+ IHR
Sbjct: 205 GDTKSACIACASIIAKVYRDNIMKKYHKKYPQYDFEKNVGYGTKTHVDALKEVGPTEIHR 264

Query: 199 LTFRPLRNL 207
           ++F  L+N+
Sbjct: 265 MSF--LKNI 271


>gi|298290630|ref|YP_003692569.1| ribonuclease H [Starkeya novella DSM 506]
 gi|296927141|gb|ADH87950.1| Ribonuclease H [Starkeya novella DSM 506]
          Length = 221

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 93/199 (46%), Positives = 124/199 (62%), Gaps = 1/199 (0%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           ++P F  E    +    PVAG+DEVGRG LAGPVV  A++LDP  +P G++DSKK++  +
Sbjct: 6   QKPDFSTERAAWKAGDVPVAGVDEVGRGPLAGPVVACAVVLDPKRVPKGLDDSKKLTAVQ 65

Query: 68  REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           RE L+E I ++A +S++ A    ID HNI +ATL A   AV  L   PR  L+DG   P 
Sbjct: 66  REALFEVICATAEVSLAFAPPARIDGHNIRQATLWAQAKAVAGLPCTPRLVLVDGND-PP 124

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            + C   A+I GD +  SIAAASI+AKVTRDRLM      +P YGF+ H+GY T +HQQ 
Sbjct: 125 PIGCAVRAIIGGDGLVASIAAASIVAKVTRDRLMASLGLAHPGYGFERHMGYSTPEHQQA 184

Query: 188 IKEKGPSCIHRLTFRPLRN 206
           +   G    HR +F P+R 
Sbjct: 185 LAALGACRHHRTSFAPVRE 203


>gi|189425513|ref|YP_001952690.1| ribonuclease HII [Geobacter lovleyi SZ]
 gi|189421772|gb|ACD96170.1| Ribonuclease H [Geobacter lovleyi SZ]
          Length = 208

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 91/208 (43%), Positives = 122/208 (58%), Gaps = 4/208 (1%)

Query: 1   MFCNSIPERPH--FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN 58
           M      + PH  +  E   R      VAGIDE GRG LAGPV+ AA+IL+P+    G+N
Sbjct: 1   MQDLLFEQPPHDLYHFERQARAAGYTFVAGIDEAGRGPLAGPVIAAAVILNPDAPVEGVN 60

Query: 59  DSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117
           DSKK++ ++RE L+E I + A+ + +       ID+ NI +AT  A+  AV+ L   P  
Sbjct: 61  DSKKLTEQRRERLFELIMARALAVGVGQVDAATIDQINILQATRRAMLAAVQALSASPDL 120

Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
            LIDG +     P     + +GDS S SIAAASIIAKVTRDR+M    K YPDYGF  H 
Sbjct: 121 LLIDGITTIAS-PLPQQTIKQGDSRSASIAAASIIAKVTRDRMMGAYDKLYPDYGFLRHK 179

Query: 178 GYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           GY +A H   +++ GP  IHR+TF  ++
Sbjct: 180 GYGSAVHLAALRQHGPCPIHRMTFAGVK 207


>gi|315023047|gb|EFT36060.1| Ribonuclease HII [Riemerella anatipestifer RA-YM]
          Length = 194

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 81/185 (43%), Positives = 114/185 (61%), Gaps = 2/185 (1%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78
             KN   V G DE GRG L GPVV AA+ILD N     INDSKK+S K R EL   I ++
Sbjct: 7   WSKNYIEV-GCDEAGRGCLCGPVVAAAVILDENFEQNLINDSKKLSFKTRNELDLYIKNN 65

Query: 79  AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137
           A+  +I+  S  +ID+HNI  A++ A++ A++ L + P   L+DG             +I
Sbjct: 66  ALDYAIAELSPAFIDEHNILNASIHAMHLALDKLAIRPELILVDGNRFKPYPFTPHECII 125

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGDS  LSIAAASI+AK  RD +M   H++YP+YG++ + GY T +H++ + + GP+  H
Sbjct: 126 KGDSKVLSIAAASILAKNYRDHIMIKLHEEYPEYGWNKNFGYATKQHREALNKLGPTIYH 185

Query: 198 RLTFR 202
           R +FR
Sbjct: 186 RKSFR 190


>gi|169342697|ref|ZP_02863738.1| ribonuclease HII [Clostridium perfringens C str. JGS1495]
 gi|169299203|gb|EDS81273.1| ribonuclease HII [Clostridium perfringens C str. JGS1495]
          Length = 272

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 87/189 (46%), Positives = 113/189 (59%), Gaps = 7/189 (3%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA 79
              VAG+DEVGRG LAGP+V AA+ILD    ++I   INDSKK+S  KREEL E I   A
Sbjct: 86  YKYVAGVDEVGRGPLAGPIVSAAVILDSSNLDDIILYINDSKKLSEHKREELSEIIKEKA 145

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           +  SIS    + ID+  I          A E L + P   L DG  + ++   +   VIK
Sbjct: 146 LSYSISMCDSKEIDEKGIGYCNNHVFIKACEGLNIKPDLVLSDGY-LIKNFNGENKHVIK 204

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD+ S  IA ASIIAKV RD +M+  HKKYP Y F+ +VGY T  H   +K+ GP+ IHR
Sbjct: 205 GDTKSACIACASIIAKVYRDNIMKEYHKKYPQYDFEKNVGYGTKTHVDALKKVGPTEIHR 264

Query: 199 LTFRPLRNL 207
           ++F  L+N+
Sbjct: 265 MSF--LKNI 271


>gi|117928761|ref|YP_873312.1| ribonuclease H [Acidothermus cellulolyticus 11B]
 gi|189043529|sp|A0LV66|RNH2_ACIC1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|117649224|gb|ABK53326.1| Ribonuclease H [Acidothermus cellulolyticus 11B]
          Length = 307

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 83/198 (41%), Positives = 111/198 (56%), Gaps = 4/198 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKRE 69
           +  E  +    + PVAG+DE GRGA AGP+VVAA+IL  D  N   G+ DSK+++   RE
Sbjct: 32  YRYERRLARLGLEPVAGVDEAGRGACAGPLVVAAVILGSDRRNRIAGLADSKQLTPAARE 91

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            +Y +I S A+  S+       +D+  +H A +  +  AV  L V P   L DG SI   
Sbjct: 92  SIYNEIISRALAWSVVVIPSSEVDELGVHAANITGMRRAVAGLAVRPAYVLTDGFSI-AG 150

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L     AV KGD     IAAAS++AKVTRDRLM   H+K+P Y F +H GY TA H+  +
Sbjct: 151 LNAPGLAVCKGDEAVACIAAASVVAKVTRDRLMVELHEKFPMYEFATHKGYVTAGHRAAL 210

Query: 189 KEKGPSCIHRLTFRPLRN 206
              GP   HR +F  +R 
Sbjct: 211 ARHGPCPEHRRSFVTVRR 228


>gi|116621683|ref|YP_823839.1| RNase HII [Candidatus Solibacter usitatus Ellin6076]
 gi|122254551|sp|Q024M2|RNH2_SOLUE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|116224845|gb|ABJ83554.1| RNase HII [Candidatus Solibacter usitatus Ellin6076]
          Length = 228

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 81/193 (41%), Positives = 115/193 (59%), Gaps = 3/193 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
           LE  +R +    VAG+DEVGRGAL G V   A+IL       G+NDSK++  ++RE L  
Sbjct: 16  LERELRARGFRAVAGVDEVGRGALFGAVFAGAVILSEERPIRGLNDSKQLDPERREVLAG 75

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   A+  SI++     ID  NI++A+  A+  AV  L   P   L+D   +P +    
Sbjct: 76  RIRERAVAWSIAAVDASTIDSINIYQASRMAMRIAVSRLSPAPDFLLVDA--VPLEFAVP 133

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             A+IKGD    +IAAASI+AKV RD  MR+  K +P+YG  SH GY T +H + I++ G
Sbjct: 134 QRALIKGDERCHAIAAASILAKVARDECMRVWDKVFPEYGLASHKGYSTPEHYRAIEQYG 193

Query: 193 PSCIHRLTFRPLR 205
           P+ +HRL+F P+R
Sbjct: 194 PTPLHRLSFEPVR 206


>gi|299140089|ref|ZP_07033258.1| Ribonuclease H [Acidobacterium sp. MP5ACTX8]
 gi|298597935|gb|EFI54104.1| Ribonuclease H [Acidobacterium sp. MP5ACTX8]
          Length = 257

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 82/208 (39%), Positives = 119/208 (57%), Gaps = 13/208 (6%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF---GI 57
           + C+  P       E  +R +    +AG+DEVGRGAL GPVV AA+IL          G+
Sbjct: 26  LICSDAP-------EQALRYQGFQSIAGVDEVGRGALFGPVVAAAVILPEKTGILARMGL 78

Query: 58  NDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116
            DSK+++ + RE L  KI + A+ ++I+      ID+ NI++A+  A+  AV+ L + P 
Sbjct: 79  KDSKQLTREDRERLDRKIRTMALAVAIAEVDAATIDRVNIYQASRMAMLMAVQQLGIAPD 138

Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
             +ID   I  D PC    +  GD++ LSIAAAS++AKV RD L+R     YP YG  SH
Sbjct: 139 HLIIDAMRI--DHPCPQTKLYYGDALCLSIAAASVVAKVYRDGLLREFDTVYPQYGLASH 196

Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            GY T +H++ +   GP  +HR TF P+
Sbjct: 197 KGYGTPEHRRALVAHGPCELHRHTFAPV 224


>gi|182625835|ref|ZP_02953601.1| ribonuclease HII [Clostridium perfringens D str. JGS1721]
 gi|177908869|gb|EDT71361.1| ribonuclease HII [Clostridium perfringens D str. JGS1721]
          Length = 272

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 88/189 (46%), Positives = 113/189 (59%), Gaps = 7/189 (3%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA 79
              VAG+DEVGRG LAGP+V AA+ILD    ++I   INDSKK+S  KREEL E I   A
Sbjct: 86  YKYVAGVDEVGRGPLAGPIVSAAVILDSSDLDDIILYINDSKKLSEHKREELSEIIKEKA 145

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           +  SIS    + ID+  I          A E L + P   L DG  + ++   +   VIK
Sbjct: 146 LSYSISMCDSKEIDEKGIGYCNNHVFIKACEGLNIKPDLVLSDGY-LIKNFNGENKHVIK 204

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD+ S  IA ASIIAKV RD +M+  HKKYP Y F+ +VGY T  H   +KE GP+ IHR
Sbjct: 205 GDTKSACIACASIIAKVYRDNIMKEYHKKYPQYDFEKNVGYGTKTHVDALKEVGPTEIHR 264

Query: 199 LTFRPLRNL 207
           ++F  L+N+
Sbjct: 265 MSF--LKNI 271


>gi|294508407|ref|YP_003572465.1| Ribonuclease HII [Salinibacter ruber M8]
 gi|294344735|emb|CBH25513.1| Ribonuclease HII [Salinibacter ruber M8]
          Length = 200

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 79/199 (39%), Positives = 108/199 (54%), Gaps = 4/199 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  +       VAG+DE GRG LAGPVV AA+I+ P      I DSK +S  +R + 
Sbjct: 2   LSHERRLWADGYERVAGLDEAGRGCLAGPVVAAAVIMPPQVEITAIQDSKALSEGQRLDA 61

Query: 72  YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL- 129
              I   A+  SI+  S   ID  NI +A L+A+  A    +  P   L+DG     +L 
Sbjct: 62  RATIEDEAVAASIARCSPTEIDDCNILQAALEAMRRAASGCRPPPDFVLVDGNQWDRNLV 121

Query: 130 --PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
             P     V+KGD+ S SIAAASI+AK  RD LMR  H+ +P+Y + S+VGYPT +H   
Sbjct: 122 DAPWPHETVVKGDAKSQSIAAASILAKTERDALMRDLHEAHPEYDWASNVGYPTQQHYDA 181

Query: 188 IKEKGPSCIHRLTFRPLRN 206
           ++E G +  HR +F   R+
Sbjct: 182 LREHGATPHHRQSFTLFRD 200


>gi|304440378|ref|ZP_07400267.1| ribonuclease HII [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371130|gb|EFM24747.1| ribonuclease HII [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 203

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 90/203 (44%), Positives = 120/203 (59%), Gaps = 12/203 (5%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E+E    +K +  V GIDEVGRG L G VV AA+I+    IP G+NDSKK++  +R ELY
Sbjct: 3   EIEKNYYDKGLDLVCGIDEVGRGCLFGDVVAAAVIMPKTRIP-GVNDSKKLTELRRAELY 61

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL------QVIPRSALIDGRSI 125
           +KI SS +   I       IDK NI  AT  A+  AV+NL      +V P   LID   +
Sbjct: 62  DKILSSCVAYGIGIMDSVTIDKINIKMATHLAMLLAVQNLRAKDGSKVDPNVLLIDAEHL 121

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
             D+P    +++KGD    SIA ASI+AKV RDRL     K+YP Y  + H GY T KH+
Sbjct: 122 ETDIP--QESIVKGDEKVYSIACASIVAKVYRDRLCEKWGKEYPGYEIEKHKGYGTKKHR 179

Query: 186 QVIKEKGPSCIHRLTFRPLRNLS 208
           +++ EKGP+  HR +F  L+N+ 
Sbjct: 180 EILLEKGPTPHHRKSF--LKNME 200


>gi|253581825|ref|ZP_04859049.1| ribonuclease HII [Fusobacterium varium ATCC 27725]
 gi|251836174|gb|EES64711.1| ribonuclease HII [Fusobacterium varium ATCC 27725]
          Length = 239

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 86/180 (47%), Positives = 111/180 (61%), Gaps = 4/180 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           + G+DE GRG LAGPVV AA+ I D N+    INDSK++S KKRE+LY+ +     I I 
Sbjct: 54  IIGVDEAGRGPLAGPVVAAAVKIKDYNSELDEINDSKQLSEKKREKLYDVVKEHFYIGIG 113

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPR---SALIDGRSIPEDLPCQAFAVIKGDS 141
            A  + ID+ NI  AT  A+  A+ENL+         L+DG     +   +   VIKGD 
Sbjct: 114 VADSKEIDEINILNATFLAMRRALENLKKECSGEYLVLVDGNFKIREYKGRQEPVIKGDG 173

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            SLSIAAASIIAKVTRDR+MR    KYP YGF+ H GY T +H+  I++ G   +HR +F
Sbjct: 174 KSLSIAAASIIAKVTRDRIMREEAIKYPLYGFEKHKGYGTKQHRDAIEKYGVLEMHRKSF 233


>gi|258647683|ref|ZP_05735152.1| ribonuclease HII [Prevotella tannerae ATCC 51259]
 gi|260852512|gb|EEX72381.1| ribonuclease HII [Prevotella tannerae ATCC 51259]
          Length = 203

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 74/179 (41%), Positives = 108/179 (60%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA++L        +NDSK++S  +R  L E+I   A+  S+ +
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVVLPEGYANARLNDSKQLSPTRRYHLREEILRDAVAWSVGT 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S   ID+ NI  A++ A++ A++ L+V P   L+DG             ++KGD+  LS
Sbjct: 73  VSASEIDEINILNASILAMHRALDGLKVRPAFILVDGNRFKPYGSTPFATIVKGDAKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  MR  H++YP YG+D + GYPT +H++ I++ G +  HR +FR L
Sbjct: 133 IAAASILAKTFRDDEMRRLHEQYPWYGWDHNAGYPTREHRRGIEQHGLTPYHRRSFRLL 191


>gi|261408005|ref|YP_003244246.1| Ribonuclease H [Paenibacillus sp. Y412MC10]
 gi|329924283|ref|ZP_08279438.1| ribonuclease HII [Paenibacillus sp. HGF5]
 gi|261284468|gb|ACX66439.1| Ribonuclease H [Paenibacillus sp. Y412MC10]
 gi|328940765|gb|EGG37080.1| ribonuclease HII [Paenibacillus sp. HGF5]
          Length = 205

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 85/198 (42%), Positives = 118/198 (59%), Gaps = 7/198 (3%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E     +    +AGIDEVGRG L G VV AA+I+    +  GINDSKK+S KKRE LY+
Sbjct: 7   YEREYWSR-YIHIAGIDEVGRGCLFGDVVAAAVIMPEGLVIEGINDSKKLSAKKRETLYD 65

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   A+ + +     + ID+ NI +A   A+  A+E L V P+  L+D   +  D+P  
Sbjct: 66  LIMEQALAVGVGLVDAETIDRINIKQAARLAMKKAIEQLAVPPQFLLVDAEKVDCDIP-- 123

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMR-IAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
             A+IKGD+ S SI AASIIAKVTRDRL       +YP+YG   H GY T  H++ ++  
Sbjct: 124 QRAIIKGDANSQSIGAASIIAKVTRDRLCEGEWEARYPEYGIAVHKGYATKFHREQLQLH 183

Query: 192 GPSCIHRLTFRPLRNLSV 209
           GP+ +HR +F  L+N+ +
Sbjct: 184 GPTAMHRRSF--LKNMEI 199


>gi|110800212|ref|YP_696393.1| ribonuclease HII [Clostridium perfringens ATCC 13124]
 gi|123049754|sp|Q0TPP7|RNH2_CLOP1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|110674859|gb|ABG83846.1| ribonuclease HII [Clostridium perfringens ATCC 13124]
          Length = 272

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 88/189 (46%), Positives = 113/189 (59%), Gaps = 7/189 (3%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA 79
              VAG+DEVGRG LAGP+V AA+ILD    ++I   INDSKK+S  KREEL E I   A
Sbjct: 86  YKYVAGVDEVGRGPLAGPIVSAAVILDSSDLDDIILYINDSKKLSEHKREELSEIIKEKA 145

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           +  SIS    + ID+  I          A E L + P   L DG  + ++   +   VIK
Sbjct: 146 LSYSISMCDSKEIDEKGIGYCNNHVFIKACEGLSIKPDLVLSDGY-LIKNFNGENKHVIK 204

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD+ S  IA ASIIAKV RD +M+  HKKYP Y F+ +VGY T  H   +KE GP+ IHR
Sbjct: 205 GDTKSACIACASIIAKVYRDNIMKEYHKKYPQYDFEKNVGYGTKTHVDALKEVGPTEIHR 264

Query: 199 LTFRPLRNL 207
           ++F  L+N+
Sbjct: 265 MSF--LKNI 271


>gi|260889965|ref|ZP_05901228.1| ribonuclease HII [Leptotrichia hofstadii F0254]
 gi|260860571|gb|EEX75071.1| ribonuclease HII [Leptotrichia hofstadii F0254]
          Length = 198

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 81/188 (43%), Positives = 113/188 (60%), Gaps = 3/188 (1%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKI 75
              EK    V G+DE GRG LAGPVV  A+I+  +      INDSKK++ KKRE L+E I
Sbjct: 2   EFDEKYNKIVVGVDEAGRGPLAGPVVAGAVIVIQDFPELQEINDSKKLTEKKRERLFEAI 61

Query: 76  TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIPEDLPCQA 133
             + I+ I  AS + ID+ NI  AT  A+  A+  +  +      L+DG  +  +   + 
Sbjct: 62  EKNCIVGIGIASEKEIDEMNILNATFLAMRRAINQVAEKSAFDIVLVDGNHLIREYEGEQ 121

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             ++KGDS SL+IA ASI+AKVTRDR++    K++P+Y F+ H GY T KH+Q++ EKG 
Sbjct: 122 ECIVKGDSKSLAIATASIVAKVTRDRILCEIAKEFPEYEFEKHKGYGTKKHRQILLEKGA 181

Query: 194 SCIHRLTF 201
              HR TF
Sbjct: 182 CKYHRKTF 189


>gi|118586886|ref|ZP_01544320.1| ribonuclease HII [Oenococcus oeni ATCC BAA-1163]
 gi|118432718|gb|EAV39450.1| ribonuclease HII [Oenococcus oeni ATCC BAA-1163]
          Length = 209

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 80/200 (40%), Positives = 120/200 (60%), Gaps = 3/200 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           R  F+ E  + ++    +AGIDEVGRG +AGPVV  + IL  N       DSK+ + ++R
Sbjct: 11  RIRFKFENELNDEGYQIIAGIDEVGRGCVAGPVVACSCILPANFNVSETYDSKRFNKRQR 70

Query: 69  EELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
             L E+I   S + +   AS   ID+ NI+++   A+  +V NL  +P + LID  ++  
Sbjct: 71  FLLEEEIKKTSCLFAFGEASVTEIDRINIYQSARLAMKRSVMNLLQMPDALLIDAMAV-- 128

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           DL  +   +I GD +S SIAAASI+AK  RDR+M    +KYP+YGF+ +VGY T++ ++ 
Sbjct: 129 DLNLKQLKIIHGDQLSNSIAAASILAKCHRDRIMIKMAEKYPEYGFERNVGYLTSEAKKA 188

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           + E G + IHR TF P+  L
Sbjct: 189 LLEYGITPIHRKTFAPISKL 208


>gi|289164797|ref|YP_003454935.1| ribonuclease HII [Legionella longbeachae NSW150]
 gi|288857970|emb|CBJ11830.1| putative ribonuclease HII [Legionella longbeachae NSW150]
          Length = 187

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 86/186 (46%), Positives = 110/186 (59%), Gaps = 4/186 (2%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81
           +  +AG+DEVGRG LAG VV AA+IL   +   G+ DSKK+S KKRE L   I   A+  
Sbjct: 4   IMLIAGVDEVGRGPLAGAVVTAAVILK--SPIEGLADSKKLSAKKRELLSLLIKEQALAY 61

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           +   A    ID  NIH ATL A+  AVE L V P   L+DG  IP+ L     A+++GD 
Sbjct: 62  AYGRAEVDEIDALNIHHATLLAMQRAVEALPVKPDQVLVDGIHIPK-LNIPCKAIVQGDD 120

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +   I+AASI+AKV RD  M      YP YGF  H GYPT  H++ +K  GPS IHR +F
Sbjct: 121 LIPEISAASILAKVFRDAEMEALDAIYPGYGFAGHKGYPTVAHREALKRLGPSQIHRKSF 180

Query: 202 RPLRNL 207
             + +L
Sbjct: 181 ALIGSL 186


>gi|172038236|ref|YP_001804737.1| ribonuclease HII [Cyanothece sp. ATCC 51142]
 gi|171699690|gb|ACB52671.1| ribonuclease HII [Cyanothece sp. ATCC 51142]
          Length = 202

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 80/194 (41%), Positives = 112/194 (57%), Gaps = 5/194 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKRE 69
           + A +   +   +AG+DEVGRG L GPVV AA++ +   I      G+ DSK++S K+RE
Sbjct: 7   MSAQLFSHSQILMAGVDEVGRGCLFGPVVAAAVVFNFTTIAQLQDIGVKDSKQLSVKRRE 66

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            L  +I + AI   IS AS Q ID+ NI  A+L A+  ++  L V P   LIDG     D
Sbjct: 67  SLVTEIKNRAISYQISYASSQEIDRLNILNASLLAMKRSITKLSVTPELCLIDGNQKIPD 126

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L      +I GD  S  IAAASI+AKV RD+L+     KYP Y  +++ GY T KH+  +
Sbjct: 127 LTIAQETIIGGDRTSPIIAAASILAKVWRDQLIVRLAAKYPHYDLENNKGYGTKKHRMGL 186

Query: 189 KEKGPSCIHRLTFR 202
           ++ GP   HR +F+
Sbjct: 187 QQYGPCFHHRRSFK 200


>gi|282859032|ref|ZP_06268168.1| ribonuclease HII [Prevotella bivia JCVIHMP010]
 gi|282588200|gb|EFB93369.1| ribonuclease HII [Prevotella bivia JCVIHMP010]
          Length = 201

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 69/179 (38%), Positives = 99/179 (55%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85
           AG DE GRG LAG V  AA+IL  N     +NDSK++S K R  L ++I   A   ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPENYHNDRLNDSKQLSAKARYALRKEIERDAMAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            +   IDK NI  A++ A++ A++ L + P + ++DG             +IKGD   LS
Sbjct: 73  VTPAEIDKINILNASILAMHRALDQLTLRPEAIIVDGNRFKAYHDIPHTTIIKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M    K+YP Y +  ++GYPT  H+  I + G +  HR ++  L
Sbjct: 133 IAAASILAKTYRDDYMLKLAKEYPIYDWQHNMGYPTKAHRAAIAQYGITPYHRKSYNLL 191


>gi|270156755|ref|ZP_06185412.1| ribonuclease HII [Legionella longbeachae D-4968]
 gi|269988780|gb|EEZ95034.1| ribonuclease HII [Legionella longbeachae D-4968]
          Length = 183

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 86/185 (46%), Positives = 109/185 (58%), Gaps = 4/185 (2%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             +AG+DEVGRG LAG VV AA+IL   +   G+ DSKK+S KKRE L   I   A+  +
Sbjct: 1   MLIAGVDEVGRGPLAGAVVTAAVILK--SPIEGLADSKKLSAKKRELLSLLIKEQALAYA 58

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
              A    ID  NIH ATL A+  AVE L V P   L+DG  IP+ L     A+++GD +
Sbjct: 59  YGRAEVDEIDALNIHHATLLAMQRAVEALPVKPDQVLVDGIHIPK-LNIPCKAIVQGDDL 117

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKV RD  M      YP YGF  H GYPT  H++ +K  GPS IHR +F 
Sbjct: 118 IPEISAASILAKVFRDAEMEALDAIYPGYGFAGHKGYPTVAHREALKRLGPSQIHRKSFA 177

Query: 203 PLRNL 207
            + +L
Sbjct: 178 LIGSL 182


>gi|325281756|ref|YP_004254298.1| Ribonuclease H [Odoribacter splanchnicus DSM 20712]
 gi|324313565|gb|ADY34118.1| Ribonuclease H [Odoribacter splanchnicus DSM 20712]
          Length = 199

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 69/179 (38%), Positives = 104/179 (58%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL  N     +NDSK++S K+R  L   I   A+  +++S
Sbjct: 13  AGCDEAGRGCLAGPVFAAAVILPDNFSDELLNDSKQLSEKQRAGLRPVIEREALAWAVAS 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
             +  IDK NI  A++ A++ A++ L+V P   ++DG    +        ++KGD   +S
Sbjct: 73  VDNHEIDKINILNASILAMHRALDQLKVRPGHIIVDGNRFKKYRDIPHLCIVKGDGKYMS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAAS++AK  RD  M   H  +P Y +  + GYPT +H++ I++ G +  HR +F  L
Sbjct: 133 IAAASVLAKTHRDEYMENLHALFPVYNWKKNKGYPTQEHRKGIEQAGVTEFHRTSFTLL 191


>gi|289434557|ref|YP_003464429.1| Ribonuclease HII [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289170801|emb|CBH27343.1| rnhB [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 261

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 86/195 (44%), Positives = 117/195 (60%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E  + ++    +AG+DEVGRG LAGPVV AA+IL  +    GINDSK++S  KRE L+
Sbjct: 60  QYENDLYQQGYKCIAGVDEVGRGPLAGPVVAAAVILPEDFSVVGINDSKQLSELKRETLF 119

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E I   AI + +    H  ID+ NI++AT  A+  A++ L   P   LID    P     
Sbjct: 120 ELIQQQAIAVGVGIIEHDVIDEVNIYEATKLAMRKALDELNPSPDFVLIDAM--PLKYTE 177

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASIIAKVTRDRLM+     YP Y F +++GY T  H   +   
Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRLMKDYDVAYPGYDFVNNMGYGTKNHLNGLDTI 237

Query: 192 GPSCIHRLTFRPLRN 206
           G   IHRL+F P++ 
Sbjct: 238 GVCPIHRLSFAPVKE 252


>gi|158337229|ref|YP_001518404.1| ribonuclease HII [Acaryochloris marina MBIC11017]
 gi|189043525|sp|B0CAM1|RNH2_ACAM1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|158307470|gb|ABW29087.1| ribonuclease HII [Acaryochloris marina MBIC11017]
          Length = 198

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 80/185 (43%), Positives = 110/185 (59%), Gaps = 5/185 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI- 80
           +AG+DEVGRGAL GPVV A +IL    I      G+ DSKK+S ++R  L  +I   A  
Sbjct: 8   IAGVDEVGRGALFGPVVAATVILSDGAIEQLVAQGMTDSKKLSPQRRMILMNQIREVATG 67

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             +  AS   ID+ NI +A+L A+  AV  L   P+  L+DG     +LP     V+KGD
Sbjct: 68  FRVGMASVYEIDRLNILQASLLAMRRAVLGLPSTPQLCLVDGNQRIPNLPVPQRTVVKGD 127

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
                IAAASI+AKV RD+L+    ++YP Y   S+ GY +AKH+Q ++E GP+  HRL+
Sbjct: 128 QSEPEIAAASILAKVWRDQLIVRLDQRYPGYDLASNKGYGSAKHRQALRELGPTRQHRLS 187

Query: 201 FRPLR 205
           F P +
Sbjct: 188 FAPCQ 192


>gi|305666398|ref|YP_003862685.1| ribonuclease HII [Maribacter sp. HTCC2170]
 gi|88708390|gb|EAR00627.1| ribonuclease HII [Maribacter sp. HTCC2170]
          Length = 198

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 70/185 (37%), Positives = 105/185 (56%), Gaps = 2/185 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85
            G DE GRG LAGPV  AA+IL  +     +NDSK++S  KR  L   I  SA+   ++ 
Sbjct: 12  VGTDEAGRGCLAGPVTAAALILPKDFKNVMLNDSKQLSENKRTILKPIIEQSAVCFGVAH 71

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
              + IDK NI  A++ A++ A++ L    +  ++DG             +IKGDS  +S
Sbjct: 72  IFPEEIDKINILNASILAMHKAIDQLTDDLKFIIVDGNRFKPYHDIPFECIIKGDSKYMS 131

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL- 204
           IAAAS++AK  RD  M   H+++P Y +  + GYPT +H++ I+E G +  HR +FR L 
Sbjct: 132 IAAASVLAKTYRDGYMEQLHEEFPMYNWKKNKGYPTKEHREAIREYGITKYHRKSFRQLP 191

Query: 205 RNLSV 209
             L++
Sbjct: 192 EQLTL 196


>gi|18310688|ref|NP_562622.1| ribonuclease HII [Clostridium perfringens str. 13]
 gi|39932438|sp|Q8XJQ0|RNH2_CLOPE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|18145369|dbj|BAB81412.1| ribonuclease HII [Clostridium perfringens str. 13]
          Length = 272

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 87/189 (46%), Positives = 114/189 (60%), Gaps = 7/189 (3%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA 79
              VAG+DEVGRG LAGP+V AA+ILD    ++I   INDSKK+S  KREEL E I   A
Sbjct: 86  YKYVAGVDEVGRGPLAGPIVSAAVILDSSDLDDIILYINDSKKLSEHKREELSEIIKEKA 145

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           +  SIS    + ID+  I     +    A E L + P   L DG  + ++   +   VIK
Sbjct: 146 LSYSISMCDSKEIDEKGIGYCNNEVFIKACEGLSIKPDLVLSDGY-LIKNFNGENKHVIK 204

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD+ S  IA ASIIAKV RD +M+  +KKYP Y F+ +VGY T  H   +KE GP+ IHR
Sbjct: 205 GDTKSACIACASIIAKVYRDNIMKEYNKKYPQYDFEKNVGYGTKTHVDALKEVGPTEIHR 264

Query: 199 LTFRPLRNL 207
           ++F  L+N+
Sbjct: 265 MSF--LKNI 271


>gi|332711237|ref|ZP_08431170.1| RNase HII [Lyngbya majuscula 3L]
 gi|332350051|gb|EGJ29658.1| RNase HII [Lyngbya majuscula 3L]
          Length = 209

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 84/184 (45%), Positives = 117/184 (63%), Gaps = 5/184 (2%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI 80
            VAG+DEVGRGAL GPVV AA+IL  + +P     G+ DSKK+S K+R+ L E+I   A+
Sbjct: 21  LVAGVDEVGRGALFGPVVAAAVILPVSVLPQLALAGVKDSKKLSRKRRQRLSEEIQGLAL 80

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             +I  A+   ID+ NI +A+L A+  AV  L+V P   LIDG  +  DLP     ++KG
Sbjct: 81  DWTIGYATSAEIDQLNILQASLLAMKRAVLKLKVKPDICLIDGLQVLPDLPIAQRNLVKG 140

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D  SL IAAASI+AKV RD L+     KY +Y   +++GY T KH+  +++ GP  +HR+
Sbjct: 141 DQRSLHIAAASIVAKVWRDDLIIRLAAKYSEYDLTANMGYGTKKHRLALQKYGPCRLHRM 200

Query: 200 TFRP 203
           +F P
Sbjct: 201 SFSP 204


>gi|315302908|ref|ZP_07873644.1| ribonuclease HII [Listeria ivanovii FSL F6-596]
 gi|313628722|gb|EFR97119.1| ribonuclease HII [Listeria ivanovii FSL F6-596]
          Length = 261

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 87/195 (44%), Positives = 121/195 (62%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E  + ++ +  +AG+DEVGRG LAGPVV AA+IL  +    GINDSK++S  KR+ L+
Sbjct: 60  QYETDLYKRGVKYIAGVDEVGRGPLAGPVVAAAVILPEHFSVIGINDSKQLSEAKRDILF 119

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           + IT  A+ + I    H  ID+ NI++AT  A+  A++ L   P   LID    P     
Sbjct: 120 DLITEQALAVGIGIIEHDVIDQVNIYEATKLAMRKALDELNPKPDFVLIDAM--PLKYTE 177

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASIIAKVTRD+LM+   K YP Y F S++GY T KH   +   
Sbjct: 178 SELSLIKGDTKSISIAAASIIAKVTRDKLMKEYEKTYPGYDFASNMGYGTKKHLYGLDTI 237

Query: 192 GPSCIHRLTFRPLRN 206
           G   IHRL+F P++ 
Sbjct: 238 GICPIHRLSFSPVKE 252


>gi|303228938|ref|ZP_07315748.1| ribonuclease HII [Veillonella atypica ACS-134-V-Col7a]
 gi|302516352|gb|EFL58284.1| ribonuclease HII [Veillonella atypica ACS-134-V-Col7a]
          Length = 266

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 88/197 (44%), Positives = 134/197 (68%), Gaps = 2/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           ++ E M  ++ ++ VAG+DEVGRG +AGPV VAA+IL P  +  G+NDSKK++ +KRE L
Sbjct: 63  YDYEGMFYDEGLYHVAGVDEVGRGPIAGPVTVAAVILPPMTLISGLNDSKKLTEEKREAL 122

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I + A+ +S  S S + ID+ NI++AT  A+Y A+  L V   + + D   +P DL 
Sbjct: 123 YDIIMNEAVAVSCISYSPEKIDELNIYEATRQAMYEAIRTLDVPAEAVVADAMKLP-DLT 181

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGDS S +IAAASIIAKVTRDR M+   ++YP YGF  H GY T  H++ +++
Sbjct: 182 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDEEYPGYGFGIHKGYYTELHKEALEQ 241

Query: 191 KGPSCIHRLTFRPLRNL 207
           +G + +HR +F P++++
Sbjct: 242 QGVTPLHRKSFEPIKSI 258


>gi|258593814|emb|CBE70155.1| Ribonuclease HII (RNase HII) [NC10 bacterium 'Dutch sediment']
          Length = 195

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 81/194 (41%), Positives = 109/194 (56%), Gaps = 2/194 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
           +E+ +R      +AG+DE GRG+LAGPVV AA+IL P     G++DSK +S ++RE L  
Sbjct: 1   MESCLRAAGYRLIAGVDEAGRGSLAGPVVAAAVILSPTCAIKGVDDSKALSAQQRERLDL 60

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I S A+ +       + ID  NI +AT+ A+  AVE L   P   LIDG   P      
Sbjct: 61  AIMSEAVAVGFGVVQEEMIDALNILQATMLAMRRAVEALNPPPGFVLIDGDQSPRC-AIP 119

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              +  GD +  SI+AASI+AKV RDR+MR      P YGF  H GY T++H   I   G
Sbjct: 120 CRLIPSGDRLCFSISAASILAKVARDRIMRAYDLALPHYGFGRHKGYGTSEHLSTIARFG 179

Query: 193 PSCIHRLTFRPLRN 206
            S IHR +F+ +R 
Sbjct: 180 VSPIHRKSFKGVRE 193


>gi|225011416|ref|ZP_03701854.1| Ribonuclease H [Flavobacteria bacterium MS024-2A]
 gi|225003919|gb|EEG41891.1| Ribonuclease H [Flavobacteria bacterium MS024-2A]
          Length = 196

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 67/181 (37%), Positives = 105/181 (58%), Gaps = 1/181 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL   N    +NDSKK++ K+R  L  +I   A+  +++ 
Sbjct: 12  AGTDEAGRGCLAGPVTAAAVILPKKNNLPLLNDSKKLTEKQRYALRPEIEKQALAYAVAH 71

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
              + ID+ NI  A++ A++ A++ L +IP   ++DG    +        V+KGD    +
Sbjct: 72  VYQEEIDEINILNASIKAMHLALKQLSLIPEFIVVDGNRFKQFEDIPHACVVKGDGKYQN 131

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           IAAAS++AK  RD  M+    ++P Y ++ + GYPT KH++ I   G +  HR++F+ L 
Sbjct: 132 IAAASVLAKTYRDDYMKKLDTEFPQYNWNKNKGYPTKKHREAIATFGITVHHRISFQLLS 191

Query: 206 N 206
            
Sbjct: 192 K 192


>gi|313201207|ref|YP_004039865.1| ribonuclease h [Methylovorus sp. MP688]
 gi|312440523|gb|ADQ84629.1| Ribonuclease H [Methylovorus sp. MP688]
          Length = 188

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 76/184 (41%), Positives = 114/184 (61%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            + G+DE GRG LAG V  AA+IL+P     G+ DSKK+S KKR+ L  +I   A+  +I
Sbjct: 5   IICGVDEAGRGPLAGAVYAAAVILNPARPIPGLADSKKLSEKKRDALTLEIKQHALAWAI 64

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + ++ + ID  NI +A++ A+  AVE L + P   L+DG   P+ +   A A++ GDS  
Sbjct: 65  AHSTVEEIDSINILQASMLAMRRAVEQLGIQPHKLLVDGLHCPQ-VSMVAEAIVDGDSKV 123

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AK  RD+ +    ++YP YGF  H GYPTA H  ++ E G S +HR ++ P
Sbjct: 124 EAISAASILAKTARDKELYALDQQYPHYGFAKHKGYPTAFHMAMLIEHGVSPVHRRSYAP 183

Query: 204 LRNL 207
           ++ L
Sbjct: 184 VKKL 187


>gi|304409576|ref|ZP_07391196.1| Ribonuclease H [Shewanella baltica OS183]
 gi|307303934|ref|ZP_07583687.1| Ribonuclease H [Shewanella baltica BA175]
 gi|304352094|gb|EFM16492.1| Ribonuclease H [Shewanella baltica OS183]
 gi|306912832|gb|EFN43255.1| Ribonuclease H [Shewanella baltica BA175]
          Length = 210

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 88/199 (44%), Positives = 118/199 (59%), Gaps = 6/199 (3%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           EA +   +   +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S K+RE L+++
Sbjct: 9   EADLLAFSTGLIAGVDEVGRGPLVGDVVTAAVILDPNKPISGLNDSKKLSEKRREALFDE 68

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-----ED 128
           I   A+   +  AS   ID+ NI  AT+ A+  AV  L + P   L+DG   P       
Sbjct: 69  ICDKALCYHVGRASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRSPIFVAHNG 128

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
               + ++IKGD +  SI+AASIIAKVTRDR M +    YP YGF  H GYPT  H + I
Sbjct: 129 AGLTSHSIIKGDGLIASISAASIIAKVTRDREMDVLDAAYPQYGFAKHKGYPTKAHFEAI 188

Query: 189 KEKGPSCIHRLTFRPLRNL 207
            E G    +R +F+P++ L
Sbjct: 189 AEHGVFDQYRKSFKPVKAL 207


>gi|73666806|ref|YP_302822.1| ribonuclease H [Ehrlichia canis str. Jake]
 gi|97182460|sp|Q3YST1|RNH2_EHRCJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|72393947|gb|AAZ68224.1| Ribonuclease H [Ehrlichia canis str. Jake]
          Length = 209

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 88/205 (42%), Positives = 120/205 (58%), Gaps = 6/205 (2%)

Query: 9   RPHFELEAMVRE---KNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKI 63
            P F +E  + +   K    + G+DEVG G+LAGPVV AA       N I + I DSKK+
Sbjct: 1   MPDFSIENEISKSINKKNCIIVGVDEVGYGSLAGPVVSAASFFLRHDNEIIYNIKDSKKL 60

Query: 64  SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
           + KKR E+Y  ITS    SI  A    ID+HNI  AT  A+  A+  L       ++DG 
Sbjct: 61  TPKKRIEVYNTITSIVKWSIGFADVYEIDQHNILNATHLAMQRALNGLNCDIDYVIVDGN 120

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +P DLP    A++ GD+IS+SIAAASIIAKVTRD+LM   H +YP+Y ++ + GY T  
Sbjct: 121 KVP-DLPWNRKAIVDGDNISVSIAAASIIAKVTRDKLMETLHTQYPEYQWNKNKGYGTKH 179

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLS 208
           H + + + G +  HR TF PL  ++
Sbjct: 180 HLESLYKYGKTIHHRNTFAPLPGIT 204


>gi|148358904|ref|YP_001250111.1| ribonuclease HII [Legionella pneumophila str. Corby]
 gi|296106952|ref|YP_003618652.1| ribonuclease HII [Legionella pneumophila 2300/99 Alcoy]
 gi|166226623|sp|A5IBL5|RNH2_LEGPC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|148280677|gb|ABQ54765.1| ribonuclease HII [Legionella pneumophila str. Corby]
 gi|295648853|gb|ADG24700.1| ribonuclease HII [Legionella pneumophila 2300/99 Alcoy]
          Length = 191

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 80/182 (43%), Positives = 109/182 (59%), Gaps = 4/182 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DEVGRG LAG VV AA+IL       G+ DSKK+S K+R  L  +I   A+  +   
Sbjct: 10  AGVDEVGRGPLAGAVVTAAVILKK--PIDGLTDSKKLSPKQRNLLAIRIKEEALAFAYGR 67

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A  + ID+ NIH ATL A+  AVE L + P + ++DG   P+ L     A+++GDS+   
Sbjct: 68  AEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVVVDGAFTPQ-LNIPCKAIVQGDSLVPE 126

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AKV RD  M    K YP YGF  H GY T  H++ +   GP  IHR ++ P+ 
Sbjct: 127 ISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCRIHRRSYSPVA 186

Query: 206 NL 207
           +L
Sbjct: 187 DL 188


>gi|154250014|ref|YP_001410839.1| ribonuclease HII [Fervidobacterium nodosum Rt17-B1]
 gi|154153950|gb|ABS61182.1| Ribonuclease H [Fervidobacterium nodosum Rt17-B1]
          Length = 245

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 80/189 (42%), Positives = 114/189 (60%), Gaps = 7/189 (3%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
           + + G+DE GRG + GPVV AA+  D      GI DSKK+S  KREELYEKI+ SA   I
Sbjct: 9   YSIIGVDEAGRGPIFGPVVAAAVFFDEGIYIEGITDSKKLSESKREELYEKISFSAKFGI 68

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPCQAFAVIK 138
             A+   ID +NI  AT  A+  A+E L    +        +DG+ +  + P +   ++K
Sbjct: 69  GIATPDEIDVYNILHATELAMNRALEILSYYIKIDEGKNIYVDGKDLRLNFPSK--CIVK 126

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD     I+AASI+AKVTRDR+M+   K++P+Y    H GY T++H +++K+ GP+  HR
Sbjct: 127 GDEKVYQISAASILAKVTRDRIMKKFDKEFPEYNLSKHKGYATSEHIELLKKYGPTPYHR 186

Query: 199 LTFRPLRNL 207
           LTF P+  L
Sbjct: 187 LTFDPVFQL 195


>gi|54297282|ref|YP_123651.1| ribonuclease HII [Legionella pneumophila str. Paris]
 gi|81370660|sp|Q5X5J3|RNH2_LEGPA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|46398979|gb|AAS92175.1| RNase H ribonuclease [Legionella pneumophila]
 gi|46398981|gb|AAS92176.1| RNase H ribonuclease [Legionella pneumophila]
 gi|46398983|gb|AAS92177.1| RNase H ribonuclease [Legionella pneumophila]
 gi|46398985|gb|AAS92178.1| RNase H ribonuclease [Legionella pneumophila]
 gi|53751067|emb|CAH12478.1| hypothetical protein lpp1327 [Legionella pneumophila str. Paris]
          Length = 191

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 80/182 (43%), Positives = 109/182 (59%), Gaps = 4/182 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DEVGRG LAG VV AA+IL       G+ DSKK+S K+R  L  +I   A+  +   
Sbjct: 10  AGVDEVGRGPLAGAVVTAAVILKK--PIDGLTDSKKLSPKQRNLLAIRIKEEALAFAYGR 67

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A  + ID+ NIH ATL A+  AVE L + P + ++DG   P+ L     A+++GDS+   
Sbjct: 68  AEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVVVDGAFTPQ-LNIPCKAIVQGDSLIPE 126

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AKV RD  M    K YP YGF  H GY T  H++ +   GP  IHR ++ P+ 
Sbjct: 127 ISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYSPVA 186

Query: 206 NL 207
           +L
Sbjct: 187 DL 188


>gi|221133301|ref|ZP_03559606.1| ribonuclease H [Glaciecola sp. HTCC2999]
          Length = 189

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 78/182 (42%), Positives = 108/182 (59%), Gaps = 2/182 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             +AG+DEVGRG L G VV AA+ILDP      +NDSKK+S KKRE LY  I   A+  +
Sbjct: 1   MLIAGVDEVGRGPLVGDVVTAAVILDPARPIAALNDSKKLSEKKREALYPIIKEQALAWA 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I  A+   ID+ NI +AT+ A+  AV  L + P    +DG  +P D    + A++KGD  
Sbjct: 61  IGRATPAEIDELNILRATILAMTRAVAGLGIRPDFVQVDGNRLP-DWDYASEAIVKGDGS 119

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AKV RD+ M +  K +P+YGF  H GYPT  H   ++       +R +F+
Sbjct: 120 IACISAASILAKVVRDQEMVVLDKLHPEYGFAQHKGYPTKAHLACLEHLPILSCYRKSFK 179

Query: 203 PL 204
           P+
Sbjct: 180 PV 181


>gi|116872706|ref|YP_849487.1| ribonuclease HII [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|123458431|sp|A0AI76|RNH2_LISW6 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|116741584|emb|CAK20708.1| ribonuclease HII [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 261

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 84/195 (43%), Positives = 117/195 (60%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E  +  +    +AG+DEVGRG LAGPVV AA+IL  +    GINDSK++S  KR+ L+
Sbjct: 60  QYETNLSTQGFQYIAGVDEVGRGPLAGPVVAAAVILPADFSLLGINDSKQLSEAKRDMLF 119

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E I   A+ I +    H  ID+ NI++AT  A+  A++ L   P   L+D    P     
Sbjct: 120 EIIKKEALSIGVGIIEHDMIDQVNIYEATKLAMSEALDQLNPAPDFILVDAM--PLKYSE 177

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASIIAKVTRDR+M+     YP Y F +++GY T KH   +   
Sbjct: 178 SELSLIKGDTKSISIAAASIIAKVTRDRMMQHYDALYPGYDFANNMGYGTKKHLNGLDTI 237

Query: 192 GPSCIHRLTFRPLRN 206
           G   IHRL+F P++ 
Sbjct: 238 GVCPIHRLSFSPVKE 252


>gi|257468837|ref|ZP_05632931.1| ribonuclease HII [Fusobacterium ulcerans ATCC 49185]
          Length = 239

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 84/180 (46%), Positives = 109/180 (60%), Gaps = 4/180 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           + G+DE GRG LAG VV AA+ I D N+    INDSK+IS KKRE LY+ +     + + 
Sbjct: 54  IIGVDEAGRGPLAGSVVAAAVKIKDYNSDLDEINDSKQISEKKRERLYDVVKEHFYVGVG 113

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPR---SALIDGRSIPEDLPCQAFAVIKGDS 141
            A  + ID+ NI  AT  A+  A+ENL+         L+DG     +   +   ++KGD 
Sbjct: 114 VADAKEIDEINILNATFLAMRRALENLKKECEGEYLVLVDGNFKIREYKGRQEPIVKGDG 173

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            SLSIAAASIIAKVTRDR+MR    KYP YGF+ H GY T +H+  I+E G   IHR +F
Sbjct: 174 KSLSIAAASIIAKVTRDRMMREEAVKYPLYGFEKHKGYGTKQHRDAIEEHGVLDIHRKSF 233


>gi|52841603|ref|YP_095402.1| ribonuclease HII [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|81377550|sp|Q5ZVR7|RNH2_LEGPH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|46398969|gb|AAS92170.1| RNase H ribonuclease [Legionella pneumophila]
 gi|46398971|gb|AAS92171.1| RNase H ribonuclease [Legionella pneumophila]
 gi|52628714|gb|AAU27455.1| ribonuclease HII [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 191

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 80/182 (43%), Positives = 108/182 (59%), Gaps = 4/182 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DEVGRG LAG VV AA+IL       G+ DSKK+S K+R  L  +I   A+  +   
Sbjct: 10  AGVDEVGRGPLAGAVVTAAVILKK--PIDGLTDSKKLSPKQRNLLAIRIKEEALAFAYGR 67

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A  + ID+ NIH ATL A+  AVE L + P +  +DG   P+ L     A+++GDS+   
Sbjct: 68  AEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVFVDGAFTPQ-LNIPCKAIVQGDSLIPE 126

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AKV RD  M    K YP YGF  H GY T  H++ +   GP  IHR ++ P+ 
Sbjct: 127 ISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYSPVA 186

Query: 206 NL 207
           +L
Sbjct: 187 DL 188


>gi|329733653|gb|EGG69981.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 21193]
          Length = 255

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +++E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115

Query: 68  REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP    ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ + GY T +H  
Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKNYPEYGFEKNAGYGTKQHLL 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G    HR +F P+++L
Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254


>gi|16800380|ref|NP_470648.1| ribonuclease HII [Listeria innocua Clip11262]
 gi|38258629|sp|Q92C79|RNH2_LISIN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|16413785|emb|CAC96543.1| rnhB [Listeria innocua Clip11262]
          Length = 261

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 86/195 (44%), Positives = 118/195 (60%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  + ++    +AG+DEVGRG LAGPVV AA+IL  +    GINDSK+++  KR+ L+
Sbjct: 60  RYETDLFKQGFQYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLNEAKRDILF 119

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           + I   AI I I    H  ID+ NI++AT  A+  A+E L   P   LID    P     
Sbjct: 120 DVIKEEAISIGIGIIDHDVIDQVNIYEATKIAMRTALEELNPAPDFVLIDAM--PLKYSE 177

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASIIAKVTRDR+M+   + YP Y F +++GY T KH   +   
Sbjct: 178 SELSLIKGDTKSISIAAASIIAKVTRDRMMQQYDELYPGYDFANNMGYGTKKHLNGLDTI 237

Query: 192 GPSCIHRLTFRPLRN 206
           G   IHRL+F P++ 
Sbjct: 238 GICPIHRLSFSPVKE 252


>gi|160874612|ref|YP_001553928.1| ribonuclease HII [Shewanella baltica OS195]
 gi|189043658|sp|A9KUL9|RNH2_SHEB9 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|160860134|gb|ABX48668.1| Ribonuclease H [Shewanella baltica OS195]
 gi|315266853|gb|ADT93706.1| Ribonuclease H [Shewanella baltica OS678]
          Length = 210

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 88/199 (44%), Positives = 118/199 (59%), Gaps = 6/199 (3%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           EA +   +   +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S K+RE L+++
Sbjct: 9   EADLLAFSTGLIAGVDEVGRGPLVGDVVTAAVILDPNKPISGLNDSKKLSEKRREALFDE 68

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-----ED 128
           I   A+   +  AS   ID+ NI  AT+ A+  AV  L + P   L+DG   P       
Sbjct: 69  ICDKALCYHVGRASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRSPIFVAHNG 128

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
               + ++IKGD +  SI+AASIIAKVTRDR M +    YP YGF  H GYPT  H + I
Sbjct: 129 AGLTSHSIIKGDGLIASISAASIIAKVTRDREMDVLDAAYPQYGFAKHKGYPTKAHFEAI 188

Query: 189 KEKGPSCIHRLTFRPLRNL 207
            E G    +R +F+P++ L
Sbjct: 189 AEHGVFDQYRKSFKPVKAL 207


>gi|323343781|ref|ZP_08084008.1| ribonuclease HII [Prevotella oralis ATCC 33269]
 gi|323095600|gb|EFZ38174.1| ribonuclease HII [Prevotella oralis ATCC 33269]
          Length = 212

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 69/181 (38%), Positives = 102/181 (56%), Gaps = 1/181 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85
           AG DE GRG LAG V  AA+IL  +     +NDSK++S K R EL  +I   A   ++  
Sbjct: 23  AGCDEAGRGCLAGSVYAAAVILPKDYDNPLLNDSKQLSVKLRYELRSQIERDATAWAVGI 82

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + ID+ NI KA+  A++ A++ L V P++ ++DG            A++KGD    +
Sbjct: 83  VTPEEIDRINILKASFLAMHRALDQLAVRPQAVIVDGNLFIPYQDLPYTAIVKGDGKYQA 142

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           IAAASI+AK  RD  M     +YP Y +  + GYPT+KH+  I+  G +  HR ++  L 
Sbjct: 143 IAAASILAKTYRDDYMEELALEYPQYDWQHNKGYPTSKHRAAIRLHGITPYHRKSYNLLG 202

Query: 206 N 206
           N
Sbjct: 203 N 203


>gi|119355888|ref|YP_910532.1| ribonuclease H [Chlorobium phaeobacteroides DSM 266]
 gi|166225181|sp|A1BCI1|RNH2_CHLPD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|119353237|gb|ABL64108.1| Ribonuclease H [Chlorobium phaeobacteroides DSM 266]
          Length = 205

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 78/202 (38%), Positives = 116/202 (57%), Gaps = 8/202 (3%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-----FGINDSKKISHKK 67
           + E  +    +  ++GIDE GRG LAGPVV AA+I      P       ++DSKK+S   
Sbjct: 4   DYEYSLWPT-LSLISGIDEAGRGPLAGPVVAAAVIFPRWFRPRHAGLDKLDDSKKLSPNL 62

Query: 68  REELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           RE+L   I + +A  +++      ID+ NI +AT+ A+ +AV +L   P   L+DG    
Sbjct: 63  REQLAPTIKTFAAFWAVAVIEPDIIDRINIFQATMQAMNNAVASLHQPPELILVDGNRFM 122

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            + P     ++KGD+   SIAAAS++AK  RD +M    K+YP+YGF+ H GYPTA H +
Sbjct: 123 PNAPIPYETIVKGDAKVFSIAAASVLAKTHRDAIMTAYGKEYPEYGFERHFGYPTASHIK 182

Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208
            I+  G + +HR +FR L+ L 
Sbjct: 183 AIETFGRTPVHRKSFR-LKQLG 203


>gi|253733518|ref|ZP_04867683.1| ribonuclease HII [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728572|gb|EES97301.1| ribonuclease HII [Staphylococcus aureus subsp. aureus TCH130]
          Length = 255

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +++E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115

Query: 68  REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAFAYGIATSEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP    ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ + GY T +H  
Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G    HR +F P+++L
Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254


>gi|217964584|ref|YP_002350262.1| ribonuclease HII (RNase HII) [Listeria monocytogenes HCC23]
 gi|254807979|sp|B8DHN2|RNH2_LISMH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|217333854|gb|ACK39648.1| ribonuclease HII (RNase HII) [Listeria monocytogenes HCC23]
 gi|307570852|emb|CAR84031.1| rnhB [Listeria monocytogenes L99]
          Length = 261

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 88/195 (45%), Positives = 123/195 (63%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E  + ++    +AG+DEVGRG LAGPVV AA+IL  +    GINDSK++S  KR+ LY
Sbjct: 60  QYETDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPDDFSVVGINDSKQLSEAKRDALY 119

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E I + AI + +    H  ID+ NI++AT  A+  A++ LQ  P   LID    P     
Sbjct: 120 ETIQTEAIAVGVGIIEHNVIDQVNIYEATKLAMRAALDQLQPEPDFVLIDAM--PLKYTE 177

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASIIAKVTRDRLM++  +KYP Y F +++GY T KH   +   
Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGTKKHLHGLDTI 237

Query: 192 GPSCIHRLTFRPLRN 206
           G   IHR++F P++ 
Sbjct: 238 GICPIHRISFAPVKE 252


>gi|116491049|ref|YP_810593.1| RNase HII [Oenococcus oeni PSU-1]
 gi|290890530|ref|ZP_06553605.1| hypothetical protein AWRIB429_0995 [Oenococcus oeni AWRIB429]
 gi|116091774|gb|ABJ56928.1| RNase HII [Oenococcus oeni PSU-1]
 gi|290479926|gb|EFD88575.1| hypothetical protein AWRIB429_0995 [Oenococcus oeni AWRIB429]
          Length = 209

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 80/200 (40%), Positives = 119/200 (59%), Gaps = 3/200 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           R  F+ E  + ++    +AGIDEVGRG +AGPVV  + IL  N       DSK+ + ++R
Sbjct: 11  RIRFKFENELNDEGYQIIAGIDEVGRGCVAGPVVACSCILPANFNVSETYDSKRFNKRQR 70

Query: 69  EELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
             L E+I   S + +   AS   ID  NI+++   A+  +V NL  +P + LID  ++  
Sbjct: 71  FLLEEEIKKTSCLFAFGEASVTEIDLINIYQSARLAMKRSVMNLLQMPDALLIDAMAV-- 128

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           DL  +   +I GD +S SIAAASI+AK  RDR+M    +KYP+YGF+ +VGY T++ ++ 
Sbjct: 129 DLNLKQLKIIHGDQLSNSIAAASILAKCHRDRIMIKMAEKYPEYGFERNVGYLTSEAKKA 188

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           + E G + IHR TF P+  L
Sbjct: 189 LLEYGITPIHRKTFAPISKL 208


>gi|253996523|ref|YP_003048587.1| Ribonuclease H [Methylotenera mobilis JLW8]
 gi|253983202|gb|ACT48060.1| Ribonuclease H [Methylotenera mobilis JLW8]
          Length = 199

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 75/196 (38%), Positives = 114/196 (58%), Gaps = 12/196 (6%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81
           M  + G+DE GRG LAG V  AA+ILDP     G+ DSKK+S KKR+ L  +I + A+  
Sbjct: 1   MQLICGVDEAGRGPLAGAVYAAAVILDPAKPIHGLADSKKLSEKKRDALALEIKTHALAW 60

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR----------SALIDGRSIPEDLPC 131
            ++ ++ + ID  NI +A+L A+  A+E++Q                 +DG   P+ +  
Sbjct: 61  GVAHSTVEEIDAINILQASLLAMQRAIESIQNSQAVQASLTNMQLLVQVDGNKCPK-ISL 119

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              A++KGDS   +I+AASI+AK  RD  +    ++YP YGF  H GYPTA H  ++++ 
Sbjct: 120 PCEAIVKGDSKVQAISAASILAKTARDAALYELDQQYPMYGFAQHKGYPTAAHMALLRQH 179

Query: 192 GPSCIHRLTFRPLRNL 207
           G S +HR ++ P+R L
Sbjct: 180 GVSPVHRRSYAPVRAL 195


>gi|88812391|ref|ZP_01127641.1| Ribonuclease H [Nitrococcus mobilis Nb-231]
 gi|88790398|gb|EAR21515.1| Ribonuclease H [Nitrococcus mobilis Nb-231]
          Length = 218

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 87/200 (43%), Positives = 118/200 (59%), Gaps = 8/200 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           RP  +  A          AGIDE GRG LAGPV+ AA+IL P     GI DSK++S  +R
Sbjct: 2   RPTLDFPAPAA-----WTAGIDEAGRGPLAGPVLAAAVILPP-APIAGIADSKRLSAARR 55

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
            EL   I + A+  +I  A  + ID+ NI +A+L A+  AV  L   P  AL+DGR  P 
Sbjct: 56  SELATIIRNRAVGWAIGRAEVEEIDRLNILQASLLAMQRAVAVLTPKPSLALVDGRDKPR 115

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            LPC+  A++ GD+  L+I AASI+AKV RD  M +  ++YP YG   H GY T +H   
Sbjct: 116 -LPCRVEAIVGGDASVLAIGAASILAKVARDAEMIMLEQRYPGYGLARHKGYGTREHLAA 174

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           ++  GP+ IHR +F+P+R L
Sbjct: 175 LRRLGPAPIHRRSFKPVRTL 194


>gi|271963370|ref|YP_003337566.1| ribonuclease H [Streptosporangium roseum DSM 43021]
 gi|270506545|gb|ACZ84823.1| Ribonuclease H [Streptosporangium roseum DSM 43021]
          Length = 228

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 75/194 (38%), Positives = 115/194 (59%), Gaps = 4/194 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +  E  +  + + PVAG+DE GRGA AGP+VVAA++L       G++DSK ++  +RE L
Sbjct: 19  YGYERALARRGLGPVAGVDEAGRGACAGPLVVAAVVL--GRRIDGLSDSKLLTAARRESL 76

Query: 72  YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           YE+IT++A  +S+       ID   +H++ ++ +  AV  L       L DG  +P  LP
Sbjct: 77  YERITATAGAVSVVVIEPAEIDARGLHRSNIEGMRRAVARLSCDLGYVLTDGFPVP-GLP 135

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  V KGD ++  +AAASI+AKVTRDR+M     ++P+YGF  H GY T  H++ ++ 
Sbjct: 136 VPSLGVWKGDQVAACVAAASIVAKVTRDRMMTALGDRHPEYGFAVHKGYGTVGHRRALET 195

Query: 191 KGPSCIHRLTFRPL 204
            GP   HR +F  +
Sbjct: 196 YGPCPAHRFSFATV 209


>gi|238022898|ref|ZP_04603324.1| hypothetical protein GCWU000324_02819 [Kingella oralis ATCC 51147]
 gi|237865706|gb|EEP66844.1| hypothetical protein GCWU000324_02819 [Kingella oralis ATCC 51147]
          Length = 200

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 73/182 (40%), Positives = 105/182 (57%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85
           AG+DE GRG L G V  AA++L  +    G+ DSKK+S  KR+ L  +I   A + +++S
Sbjct: 11  AGVDEAGRGCLVGSVFAAAVMLPVHYDLPGLTDSKKLSEAKRDALAAQIKRQATVWAVAS 70

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A+   I + NI  AT+ A+  AV  L   P    IDG  +P DL   A AV+KGD+   +
Sbjct: 71  ANPAEIQRLNILHATMLAMCRAVAALPRQPEKVWIDGNRVPPDLAVPAEAVVKGDAKIAA 130

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           ++AASI+AK  RD  M   H+++P+YGF  H GY TA H   ++  G    HR  F P++
Sbjct: 131 VSAASILAKTARDAEMYALHERHPEYGFAQHKGYGTAAHLAALQRYGALPEHRADFAPVK 190

Query: 206 NL 207
            +
Sbjct: 191 QI 192


>gi|298694537|gb|ADI97759.1| ribonuclease HII [Staphylococcus aureus subsp. aureus ED133]
          Length = 255

 Score =  235 bits (601), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +++E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115

Query: 68  REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAYAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP    ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ + GY T +H  
Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G    HR +F P+++L
Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254


>gi|295687798|ref|YP_003591491.1| Ribonuclease H [Caulobacter segnis ATCC 21756]
 gi|295429701|gb|ADG08873.1| Ribonuclease H [Caulobacter segnis ATCC 21756]
          Length = 209

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 91/186 (48%), Positives = 117/186 (62%), Gaps = 4/186 (2%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
              PV G+DE GRG  AGPV  AA+ILDP+ +P G+NDSKK++ K R  L E+I + AI 
Sbjct: 8   GQGPVCGVDEAGRGPWAGPVSAAAVILDPDRVPKGLNDSKKLTAKARAALEEEIKAVAIA 67

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPEDLPCQAFAVIKG 139
             +  AS + I ++NI  AT  A+  A+E L V P  AL+DG    P  LPC+   V+KG
Sbjct: 68  WCVDMASIEEIAEYNILHATGRAMCRAIEGLSVTPAIALVDGNYRFP--LPCEIKTVVKG 125

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DS+S SIAAASI+AK  RDRLM      YP YGF SH GY    H + + + GPS IHRL
Sbjct: 126 DSLSCSIAAASILAKEARDRLMIEMDAVYPGYGFASHKGYHARIHVEGLVKLGPSPIHRL 185

Query: 200 TFRPLR 205
            + P++
Sbjct: 186 GWAPVK 191


>gi|317504209|ref|ZP_07962202.1| ribonuclease HII [Prevotella salivae DSM 15606]
 gi|315664660|gb|EFV04334.1| ribonuclease HII [Prevotella salivae DSM 15606]
          Length = 220

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 74/193 (38%), Positives = 110/193 (56%), Gaps = 11/193 (5%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG VV AA+IL  + +   +NDSKK++ K+R  L E+I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGNVVAAAVILPTDYVNPLLNDSKKLTAKQRYALREQIEHEALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-----DLP-----CQAFA 135
           A+ + ID  NI  A+  A++ A++ L++ P + ++DG           LP          
Sbjct: 73  ATPEEIDNINILHASFLAMHRALDQLKLRPEAVIVDGNHFDPYVIGKGLPDEGKILPHTC 132

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           ++KGD   LSIAAASI+AK  RD  M    +++P YG++ + GYPT  H Q I++ G   
Sbjct: 133 IVKGDGKYLSIAAASILAKTYRDDYMTEQAERFPFYGWEKNKGYPTKTHYQGIEKHGLCA 192

Query: 196 IHRLTFRPLRNLS 208
           +HR +F    NLS
Sbjct: 193 LHRKSFNTHPNLS 205


>gi|302332850|gb|ADL23043.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 255

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +++E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115

Query: 68  REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAFAFGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP    ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ + GY T +H  
Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G    HR +F P+++L
Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254


>gi|329912123|ref|ZP_08275683.1| Ribonuclease HII [Oxalobacteraceae bacterium IMCC9480]
 gi|327545705|gb|EGF30849.1| Ribonuclease HII [Oxalobacteraceae bacterium IMCC9480]
          Length = 188

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 80/182 (43%), Positives = 113/182 (62%), Gaps = 2/182 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
            G+DE GRG LAGPV  AA+ILDP +   G+ DSKK++  +R+ L  +I + A+  SI+ 
Sbjct: 2   CGVDEAGRGPLAGPVFAAAVILDPAHPIAGLRDSKKLTEARRDALAIEIKAHALAWSIAE 61

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            SH  ID  NI +A+L A+  AV+ L   P  ALIDG   P  +  ++ A++ GD    +
Sbjct: 62  CSHHEIDAINILQASLLAMKRAVDTLPTTPTLALIDGNRCPV-MTVRSIAIVGGDDKVDA 120

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AK  RD  + + H  YPDY FD H GYPTA H + ++  G S +HR ++ P+R
Sbjct: 121 ISAASILAKTARDAALVVLHADYPDYAFDRHKGYPTALHLERLRLHGVSPVHRRSYAPVR 180

Query: 206 NL 207
            L
Sbjct: 181 RL 182


>gi|322435742|ref|YP_004217954.1| Ribonuclease H [Acidobacterium sp. MP5ACTX9]
 gi|321163469|gb|ADW69174.1| Ribonuclease H [Acidobacterium sp. MP5ACTX9]
          Length = 247

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 85/211 (40%), Positives = 123/211 (58%), Gaps = 13/211 (6%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI---PFGI 57
           + C+  P       E  +R +    +AG+DEVGRGAL GPVV AA+IL          G+
Sbjct: 17  LVCSDAP-------EQALRYRGARSIAGVDEVGRGALFGPVVAAAVILPAGLASLAKAGL 69

Query: 58  NDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116
            DSK+++ ++RE L ++I   AI +S++    + ID+ NI++AT  A+  AVE L + P 
Sbjct: 70  TDSKQLTREERESLDKRIRRMAIAVSVAEIDAETIDRVNIYQATRLAMLQAVEGLAIAPD 129

Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
             LID   +    PC    +  GD++SLSIAAAS++AKV RD LMR     +P YG  SH
Sbjct: 130 HLLIDAMVVSH--PCPQTKLFYGDALSLSIAAASVVAKVHRDGLMRELDLVHPQYGLASH 187

Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
            GY T +H++ + E G   +HR +F P+R L
Sbjct: 188 KGYATPEHRRALLEHGACALHRHSFAPVRAL 218


>gi|94986666|ref|YP_594599.1| ribonuclease HII [Lawsonia intracellularis PHE/MN1-00]
 gi|189043608|sp|Q1MRU8|RNH2_LAWIP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|94730915|emb|CAJ54278.1| ribonuclease HII [Lawsonia intracellularis PHE/MN1-00]
          Length = 224

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 85/211 (40%), Positives = 118/211 (55%), Gaps = 14/211 (6%)

Query: 4   NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
            S+P  PH     +V +      AG+DEVGRG LAGPVV  A+IL       G+ DSK I
Sbjct: 15  QSLPITPH----ELVYDNLSLLTAGLDEVGRGCLAGPVVAGAVILPDTISIDGLADSKTI 70

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           S  +R  L +KI  +AI   I     + ID+ NI +A+L A+ HA   L+  P   LIDG
Sbjct: 71  SSNRRYILAKKIYETAISWGIGVVWPKEIDEINILQASLKAMAHAATVLKTFPELLLIDG 130

Query: 123 RS-IPEDLPCQ--------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173
              IP+    Q          ++IKGD+   +I+AASIIAK  RD LM    K+YP Y F
Sbjct: 131 NKAIPQKFFIQFGWNFLPIQHSIIKGDASIPAISAASIIAKTFRDTLMSKLDKRYPQYNF 190

Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
             + GY +  H++++++ GPS IHR+TF+ +
Sbjct: 191 SKNKGYGSKTHREILQKIGPSPIHRMTFKGV 221


>gi|325106085|ref|YP_004275739.1| RNase HII [Pedobacter saltans DSM 12145]
 gi|324974933|gb|ADY53917.1| RNase HII [Pedobacter saltans DSM 12145]
          Length = 198

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 71/177 (40%), Positives = 100/177 (56%), Gaps = 1/177 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL  +     + DSK+++ K R+ L  +I   A+  +++ 
Sbjct: 13  AGCDEAGRGCLAGPVFAAAVILPKDFFHPLLTDSKQLTDKDRKALRIEIEEKALAFAVAP 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
             H+ ID+ NI  A+  A++ A++ L + P   +IDG             VIKGD    S
Sbjct: 73  VDHEEIDRINILNASFLAMHKALDKLTIRPEFIIIDGNRFKSYNNIGHQCVIKGDGKYYS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           IAAASI+AK  RD  M   H+++P Y ++ + GYPT KH+  I E G    HR TFR
Sbjct: 133 IAAASILAKTYRDDYMDALHEEFPLYDWNKNKGYPTTKHRLAILEHGICTYHRKTFR 189


>gi|15604075|ref|NP_220590.1| ribonuclease HII [Rickettsia prowazekii str. Madrid E]
 gi|7227932|sp|Q9ZDW3|RNH2_RICPR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|3860766|emb|CAA14667.1| RIBONUCLEASE HII (rnhB) [Rickettsia prowazekii]
 gi|292571798|gb|ADE29713.1| Ribonuclease HII [Rickettsia prowazekii Rp22]
          Length = 193

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 87/191 (45%), Positives = 119/191 (62%), Gaps = 5/191 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            + E        + VAG+DE GRG+L GPVV +A+I+D  +I  GI DSKK+S  KRE L
Sbjct: 6   LQYEKKYHN---YIVAGVDEAGRGSLVGPVVASAVIIDKADIIPGIKDSKKLSKNKREIL 62

Query: 72  YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           YE+ITS+ + S +  +H  ID  NI +AT  A   AV NL + P+  L+DG     D+  
Sbjct: 63  YERITSNYVWSTAIIAHTEIDNINILEATKKACAIAVANLSLKPQKILVDGNMKFSDI-- 120

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +  ++I GD++SLSIAAASIIAKVTRDRLM     ++P Y +  + GY T +H + IK  
Sbjct: 121 RFISIINGDNLSLSIAAASIIAKVTRDRLMLELSAEFPQYLWHKNYGYGTREHIEAIKTH 180

Query: 192 GPSCIHRLTFR 202
           G S  HR +F+
Sbjct: 181 GLSSYHRRSFK 191


>gi|220905054|ref|YP_002480366.1| Ribonuclease H [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219869353|gb|ACL49688.1| Ribonuclease H [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 230

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 76/193 (39%), Positives = 108/193 (55%), Gaps = 16/193 (8%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AGIDE GRG LAGPVV  A+IL P     G+ DSK  + ++R  L  +I  SA+   +  
Sbjct: 27  AGIDEAGRGCLAGPVVAGAVILPPEYDLPGLADSKACTARQRGLLAPRIKKSALAWGLGI 86

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED--------------LPC 131
                ID+ NI +AT +A+  AV +L++ P+  L+DG  +  +              LP 
Sbjct: 87  VWPDRIDRINILQATFEAMSMAVRHLRITPQILLVDGNKVIPEPALAPQWLRAHGDTLPL 146

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           Q  A++ GD+   +I+AASI+AK  RD LM    K++P YGF  H GY T +H + ++  
Sbjct: 147 Q-RAIVGGDAAEPAISAASILAKTCRDTLMTSLDKRWPGYGFAIHKGYGTKEHYEALRRL 205

Query: 192 GPSCIHRLTFRPL 204
           GP   HRLTFR +
Sbjct: 206 GPCPQHRLTFRGV 218


>gi|149277087|ref|ZP_01883229.1| ribonuclease HII [Pedobacter sp. BAL39]
 gi|149231964|gb|EDM37341.1| ribonuclease HII [Pedobacter sp. BAL39]
          Length = 203

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 74/177 (41%), Positives = 99/177 (55%), Gaps = 1/177 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL P+ IP  + DSKK++HK+R  L   I   A+  +++S
Sbjct: 13  AGCDEAGRGCLAGPVFAAAVILPPDFIPGELTDSKKLNHKQRAALRIIIEQEALAWAVAS 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
             H+ IDK NI  A+  A++ A+E L + P    IDG             ++KGD   L+
Sbjct: 73  VDHEEIDKINILNASFLAMHRAIEQLSLKPEYLSIDGNRFKAYTGIPHSCIVKGDGKYLN 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           IAAASI+AK  RD  M     +YP Y +  + GYPT  H++     G S  HR TF 
Sbjct: 133 IAAASILAKTHRDEHMEQLALEYPVYQWAQNKGYPTIVHRKAALAHGLSPYHRKTFS 189


>gi|323441022|gb|EGA98729.1| ribonuclease HII [Staphylococcus aureus O11]
 gi|323442339|gb|EGA99969.1| ribonuclease HII [Staphylococcus aureus O46]
          Length = 255

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +++E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115

Query: 68  REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAFAFGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP    ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ + GY T +H  
Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G    HR +F P+++L
Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254


>gi|282916494|ref|ZP_06324256.1| ribonuclease HII [Staphylococcus aureus subsp. aureus D139]
 gi|283770307|ref|ZP_06343199.1| ribonuclease HII [Staphylococcus aureus subsp. aureus H19]
 gi|282319934|gb|EFB50282.1| ribonuclease HII [Staphylococcus aureus subsp. aureus D139]
 gi|283460454|gb|EFC07544.1| ribonuclease HII [Staphylococcus aureus subsp. aureus H19]
          Length = 255

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +++E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115

Query: 68  REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP    ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ + GY T +H  
Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G    HR +F P+++L
Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254


>gi|75907505|ref|YP_321801.1| ribonuclease HII [Anabaena variabilis ATCC 29413]
 gi|97182199|sp|Q3MDN0|RNH2_ANAVT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|75701230|gb|ABA20906.1| RNase HII [Anabaena variabilis ATCC 29413]
          Length = 225

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 83/187 (44%), Positives = 119/187 (63%), Gaps = 5/187 (2%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
             VAG+DEVGRGAL GPVV A++IL  ++ P      I DSKK+SH +R +L ++I++ A
Sbjct: 35  GLVAGVDEVGRGALFGPVVAASVILPASSFPQLMTAEIKDSKKLSHSRRVQLAQQISTLA 94

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           I   I  A+   ID+ NI +ATL A+  +V+ L++ P   L+DG    +DLP     ++K
Sbjct: 95  IDWRIGYATTAEIDRINILQATLLAMRRSVKKLKLQPILCLVDGNQPVQDLPILQQTIVK 154

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD  SL+IAAASI+AKV RD L++    KYP Y   S+ GY + KH   +++ G S +HR
Sbjct: 155 GDERSLNIAAASIMAKVWRDDLIQRLSTKYPMYDLKSNKGYGSKKHLLALEKHGASPLHR 214

Query: 199 LTFRPLR 205
            +FRP +
Sbjct: 215 QSFRPCQ 221


>gi|91218354|ref|ZP_01255298.1| ribonuclease HII [Psychroflexus torquis ATCC 700755]
 gi|91183492|gb|EAS69891.1| ribonuclease HII [Psychroflexus torquis ATCC 700755]
          Length = 197

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 70/179 (39%), Positives = 100/179 (55%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
            G DE GRG LAGPV  AA+IL  +     + DSK +S  KRE L   +  S++   I+ 
Sbjct: 13  CGTDEAGRGCLAGPVTAAAVILPKDFKNELLTDSKLLSSSKREFLEVILKESSVSFGIAH 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
              + ID+ NI  A++ A++ +++ L   P   L+DG             +IKGDS  LS
Sbjct: 73  IMMETIDEINILNASIKAMHASIQQLTPDPELILVDGNRFHTYPNIPHQCIIKGDSKFLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI AK  RD  M+   K++P YG+  + GYPT  H++ I+E G +  HR +F+ L
Sbjct: 133 IAAASIFAKTARDAYMKTIDKEFPMYGWAQNKGYPTKAHRKAIREYGITKYHRQSFKLL 191


>gi|42523584|ref|NP_968964.1| ribonuclease HII (RNase HII) [Bdellovibrio bacteriovorus HD100]
 gi|81617170|sp|Q6MLA0|RNH2_BDEBA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|39575790|emb|CAE79957.1| ribonuclease HII (RNase HII) [Bdellovibrio bacteriovorus HD100]
          Length = 221

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 82/183 (44%), Positives = 110/183 (60%), Gaps = 1/183 (0%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           P+ G+DEVGRG LAGPV  AA+I   + +   + DSK +S K+REEL + I    I+ I 
Sbjct: 37  PIIGVDEVGRGCLAGPVYAAAVIFKSDALNDLVTDSKLLSEKRREELADLILKEHIVGIG 96

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC-QAFAVIKGDSIS 143
           SAS + ID+ NI  A+L A+  AVE L V     L+DG     +L   +   ++KGD   
Sbjct: 97  SASVEEIDEINILNASLLAMKRAVEKLGVKSGHVLVDGNKKIPNLKGFEQSTIVKGDLRV 156

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRDRLM+    KYP YGF+ H GY T  H+Q I + GP   HR +F  
Sbjct: 157 APISAASIVAKVTRDRLMKDLGVKYPHYGFEIHKGYSTPVHKQSIVDHGPCIAHRRSFAG 216

Query: 204 LRN 206
           ++ 
Sbjct: 217 VKE 219


>gi|300767456|ref|ZP_07077368.1| ribonuclease HII [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308180667|ref|YP_003924795.1| ribonuclease HII [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|300495275|gb|EFK30431.1| ribonuclease HII [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308046158|gb|ADN98701.1| ribonuclease HII [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 255

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 89/197 (45%), Positives = 119/197 (60%), Gaps = 3/197 (1%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           H  LE          VAGIDEVGRG LAGPVV AA++LD +     +NDSK+++ KKR  
Sbjct: 57  HMRLERDFWAHGGQYVAGIDEVGRGPLAGPVVTAAVVLDDHFDLLEVNDSKQLTAKKRAA 116

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L  +I   A+ + I  A  Q ID+ NI++AT  A+  AV NL V P   L+D   +P  +
Sbjct: 117 LMPRILEEAVAVGIGVADAQQIDQLNIYEATRVAMAQAVRNLSVRPTRLLVDAMQVP--V 174

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P +   +IKGD+ S SI+AASI+AKV RD LM +  + YP Y F  ++GY TAKH   + 
Sbjct: 175 PIEQTRLIKGDAKSASISAASIVAKVVRDHLMTMYDQVYPGYDFADNMGYGTAKHLAGLA 234

Query: 190 EKGPSCIHRLTFRPLRN 206
             G + IHR +F P+RN
Sbjct: 235 SLGATPIHRQSFSPVRN 251


>gi|58696709|ref|ZP_00372256.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila simulans]
 gi|58698315|ref|ZP_00373232.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58535188|gb|EAL59270.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58537106|gb|EAL60222.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila simulans]
          Length = 180

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 80/179 (44%), Positives = 113/179 (63%), Gaps = 2/179 (1%)

Query: 29  IDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87
           +DEVGRG LAGPV+ AA++  D N I  GINDSKK++ + R+ LYEKI S A   I  AS
Sbjct: 1   MDEVGRGPLAGPVISAAVVFIDRNTIIDGINDSKKLTPQCRQVLYEKIISVAKFGIGMAS 60

Query: 88  HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147
            + I+ +NI +AT  ++  A+ +L +     L+DG   PE +  Q  +++ GD++S SIA
Sbjct: 61  VEEINSYNILQATKLSMKRALIDLDLELDYVLVDGNQPPE-VKWQVKSIVNGDNLSTSIA 119

Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           AASI+AKVTRDRLM+  H K+P+Y +  + GY T +H   I   G +  HR  F P+  
Sbjct: 120 AASIVAKVTRDRLMQELHNKHPEYNWYKNKGYGTKEHLNAIGLYGITEHHRRNFAPISR 178


>gi|57651813|ref|YP_186119.1| ribonuclease HII [Staphylococcus aureus subsp. aureus COL]
 gi|87160122|ref|YP_493834.1| ribonuclease HII [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194952|ref|YP_499752.1| ribonuclease HII [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151221366|ref|YP_001332188.1| ribonuclease HII [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161509410|ref|YP_001575069.1| ribonuclease HII [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142034|ref|ZP_03566527.1| ribonuclease HII [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|258452543|ref|ZP_05700549.1| ribonuclease HII [Staphylococcus aureus A5948]
 gi|262048142|ref|ZP_06021029.1| RNase HII [Staphylococcus aureus D30]
 gi|282920028|ref|ZP_06327757.1| ribonuclease HII [Staphylococcus aureus A9765]
 gi|284024237|ref|ZP_06378635.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 132]
 gi|294848239|ref|ZP_06788986.1| ribonuclease HII [Staphylococcus aureus A9754]
 gi|304381192|ref|ZP_07363845.1| ribonuclease HII [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|71153704|sp|Q5HGI8|RNH2_STAAC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|97189306|sp|Q2FHJ4|RNH2_STAA3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|122539702|sp|Q2FZ38|RNH2_STAA8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|172048860|sp|A6QGE4|RNH2_STAAE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|189043665|sp|A8Z3S4|RNH2_STAAT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|57285999|gb|AAW38093.1| ribonuclease HII [Staphylococcus aureus subsp. aureus COL]
 gi|87126096|gb|ABD20610.1| ribonuclease HII [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202510|gb|ABD30320.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150374166|dbj|BAF67426.1| ribonuclease HII [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368219|gb|ABX29190.1| ribonuclease H [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|257859761|gb|EEV82603.1| ribonuclease HII [Staphylococcus aureus A5948]
 gi|259163708|gb|EEW48263.1| RNase HII [Staphylococcus aureus D30]
 gi|269940736|emb|CBI49117.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282594744|gb|EFB99728.1| ribonuclease HII [Staphylococcus aureus A9765]
 gi|294825039|gb|EFG41461.1| ribonuclease HII [Staphylococcus aureus A9754]
 gi|302751067|gb|ADL65244.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340175|gb|EFM06116.1| ribonuclease HII [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315198484|gb|EFU28813.1| ribonuclease H [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140940|gb|EFW32787.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144345|gb|EFW36111.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329313913|gb|AEB88326.1| Ribonuclease HII [Staphylococcus aureus subsp. aureus T0131]
 gi|329728949|gb|EGG65363.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 21189]
          Length = 255

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +++E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115

Query: 68  REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP    ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ + GY T +H  
Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G    HR +F P+++L
Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254


>gi|331009297|gb|EGH89353.1| ribonuclease HII [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 217

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 88/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK++  +RE+LY +I   A+   I
Sbjct: 13  LVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLYVEIQEKALCWFI 72

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + A  + ID+ NI  AT+ A+  AVE L + P+ ALIDG   P+ L   +  V+KGDS  
Sbjct: 73  ARAEVEEIDQLNILHATMLAMKRAVEGLSITPKLALIDGNRCPQ-LSVPSAPVVKGDSRV 131

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +IAAASI+AKV+RDR M      YP YG   H GYPT  H + +   GP+ IHR +F P
Sbjct: 132 AAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 191

Query: 204 LR 205
           +R
Sbjct: 192 VR 193


>gi|317486906|ref|ZP_07945716.1| ribonuclease HII [Bilophila wadsworthia 3_1_6]
 gi|316921781|gb|EFV43057.1| ribonuclease HII [Bilophila wadsworthia 3_1_6]
          Length = 237

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 80/191 (41%), Positives = 110/191 (57%), Gaps = 12/191 (6%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAGIDE GRG LAGPVV AA+IL    +  G+ DSK +S  +R+ L  +I + A+   + 
Sbjct: 34  VAGIDEAGRGCLAGPVVAAAVILPEGAVIPGLADSKVLSPTRRDGLAAEIGAVALAWGLG 93

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPEDL----------PCQA 133
                 ID+ NI +ATL A+ HA   L+V P+  LIDG  +IPE L            + 
Sbjct: 94  VVWPPEIDRINILQATLKAMCHAASVLKVRPKGLLIDGNQTIPEPLFRQRAACWPSSPRQ 153

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            +++ GD++   I+AASIIAK  RD LM     +YP YGF  H GY + +H   ++E GP
Sbjct: 154 KSIVDGDALVPVISAASIIAKTFRDMLMDKLDHRYPGYGFAKHKGYGSKEHFAALRELGP 213

Query: 194 SCIHRLTFRPL 204
             +HR TFR +
Sbjct: 214 CPMHRKTFRGV 224


>gi|83721502|ref|YP_442565.1| ribonuclease HII [Burkholderia thailandensis E264]
 gi|167581492|ref|ZP_02374366.1| ribonuclease HII [Burkholderia thailandensis TXDOH]
 gi|167619603|ref|ZP_02388234.1| ribonuclease HII [Burkholderia thailandensis Bt4]
 gi|257138774|ref|ZP_05587036.1| ribonuclease HII [Burkholderia thailandensis E264]
 gi|97182353|sp|Q2SWY4|RNH2_BURTA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|83655327|gb|ABC39390.1| ribonuclease HII [Burkholderia thailandensis E264]
          Length = 214

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 87/183 (47%), Positives = 122/183 (66%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            V G+DE GRG LAGPVV AA++LDP     G++DSK +S KKRE L+++I + A+   +
Sbjct: 27  IVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAHALAYCV 86

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS + ID  NI  AT+ A+  AVE L V P  A IDG   P  L  ++ A++ GD++ 
Sbjct: 87  ASASVEEIDTLNILHATMLAMKRAVEGLAVRPTLAKIDGNRCPM-LAIRSEAIVGGDALV 145

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+++P YGFD+H GY T +H   ++E GP   HR +F P
Sbjct: 146 PSISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAP 205

Query: 204 LRN 206
           +R 
Sbjct: 206 VRE 208


>gi|283470457|emb|CAQ49668.1| ribonuclease HII (RNase HII) [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 255

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +++E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115

Query: 68  REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP    ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ + GY T +H  
Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKNYPEYGFEKNAGYGTKQHLL 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G    HR +F P+++L
Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254


>gi|46907500|ref|YP_013889.1| ribonuclease HII [Listeria monocytogenes serotype 4b str. F2365]
 gi|226223876|ref|YP_002757983.1| ribonuclease H rnh [Listeria monocytogenes Clip81459]
 gi|254824666|ref|ZP_05229667.1| ribonuclease HII [Listeria monocytogenes FSL J1-194]
 gi|254852673|ref|ZP_05242021.1| ribonuclease HII [Listeria monocytogenes FSL R2-503]
 gi|254932410|ref|ZP_05265769.1| rnhB [Listeria monocytogenes HPB2262]
 gi|255520255|ref|ZP_05387492.1| ribonuclease HII [Listeria monocytogenes FSL J1-175]
 gi|300765309|ref|ZP_07075293.1| ribonuclease HII [Listeria monocytogenes FSL N1-017]
 gi|67461454|sp|Q720E8|RNH2_LISMF RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|259494069|sp|C1L2I1|RNH2_LISMC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|46880768|gb|AAT04066.1| ribonuclease HII [Listeria monocytogenes serotype 4b str. F2365]
 gi|225876338|emb|CAS05047.1| Putative ribonuclease H rnh [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|258605991|gb|EEW18599.1| ribonuclease HII [Listeria monocytogenes FSL R2-503]
 gi|293583967|gb|EFF95999.1| rnhB [Listeria monocytogenes HPB2262]
 gi|293593905|gb|EFG01666.1| ribonuclease HII [Listeria monocytogenes FSL J1-194]
 gi|300513992|gb|EFK41055.1| ribonuclease HII [Listeria monocytogenes FSL N1-017]
 gi|328468563|gb|EGF39563.1| ribonuclease HII [Listeria monocytogenes 1816]
 gi|328475117|gb|EGF45901.1| ribonuclease HII [Listeria monocytogenes 220]
 gi|332311718|gb|EGJ24813.1| Ribonuclease HII [Listeria monocytogenes str. Scott A]
          Length = 261

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 87/195 (44%), Positives = 121/195 (62%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E  + ++    +AG+DEVGRG LAGPVV AA+IL  +    GINDSK++S  KR+ L+
Sbjct: 60  QYETDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALF 119

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E I   AI I +    H  ID+ NI++AT  A+  A++ L   P   LID    P     
Sbjct: 120 ETIKKEAIAIGVGIIEHDVIDQVNIYEATKLAMREALDQLTPEPDFVLIDAM--PLRYTE 177

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASIIAKVTRDRLM++  +KYP Y F +++GY T KH   +   
Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGTKKHLLGLDTI 237

Query: 192 GPSCIHRLTFRPLRN 206
           G   IHR++F P++ 
Sbjct: 238 GICPIHRISFAPVKE 252


>gi|258423915|ref|ZP_05686800.1| ribonuclease HII [Staphylococcus aureus A9635]
 gi|257845944|gb|EEV69973.1| ribonuclease HII [Staphylococcus aureus A9635]
          Length = 255

 Score =  234 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 85/201 (42%), Positives = 121/201 (60%), Gaps = 4/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +++E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115

Query: 68  REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             L     ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ + GY T +H  
Sbjct: 176 NAL--TQVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G    HR +F P+++L
Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254


>gi|253731863|ref|ZP_04866028.1| ribonuclease HII [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724273|gb|EES93002.1| ribonuclease HII [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 255

 Score =  234 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +++E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115

Query: 68  REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP    ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ + GY T +H  
Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKNYPEYGFEKNAGYGTKQHLL 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G    HR +F P+++L
Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254


>gi|126173702|ref|YP_001049851.1| ribonuclease HII [Shewanella baltica OS155]
 gi|166226650|sp|A3D2L9|RNH2_SHEB5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|125996907|gb|ABN60982.1| RNase HII [Shewanella baltica OS155]
          Length = 210

 Score =  234 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 88/199 (44%), Positives = 118/199 (59%), Gaps = 6/199 (3%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           EA +   +   +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S K+RE L+++
Sbjct: 9   EADLLAFSTGLIAGVDEVGRGPLVGDVVTAAVILDPNKPISGLNDSKKLSEKRREALFDE 68

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-----ED 128
           I   A+   +  AS   ID+ NI  AT+ A+  AV  L + P   L+DG   P       
Sbjct: 69  ICDKALCYHVGRASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRSPIFVAHNG 128

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
               + ++IKGD +  SI+AASIIAKVTRDR M +    YP YGF  H GYPT  H + I
Sbjct: 129 AELTSHSIIKGDGLIASISAASIIAKVTRDREMDVLDAAYPQYGFAKHKGYPTKAHFEAI 188

Query: 189 KEKGPSCIHRLTFRPLRNL 207
            E G    +R +F+P++ L
Sbjct: 189 AEHGVFDQYRKSFKPVKAL 207


>gi|256383963|gb|ACU78533.1| ribonuclease HII [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384795|gb|ACU79364.1| ribonuclease HII [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455877|gb|ADH22112.1| ribonuclease HII [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 207

 Score =  234 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 74/204 (36%), Positives = 122/204 (59%), Gaps = 2/204 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           + +R  F+ + +  + N+  ++G DE GRG LAGP+VVA++IL  +     I DSKK++ 
Sbjct: 1   MIDRKLFD-DQIKLDHNITYLSGSDEAGRGCLAGPLVVASVILKADYFNPLIKDSKKLNP 59

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           K R+ L+++I  + +   I   S + +D+ N  +A+L      + NL++ P   LIDG  
Sbjct: 60  KTRQLLFDEIIKNCLDYQIIVISSKQVDELNPLQASLLGFKTTISNLKITPDLGLIDGNQ 119

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
                  +  ++IKGD  S SIA +SI+AKVTRD+++    + YP+YGF SH GY T +H
Sbjct: 120 NINLENIKTLSIIKGDDKSFSIACSSILAKVTRDKILDQYDQIYPNYGFKSHKGYCTKQH 179

Query: 185 QQVIKEKGPSCIHRLTFRPLRNLS 208
              I++ G   IHR +++P++ +S
Sbjct: 180 LLAIQKYGILDIHRKSYKPIKKIS 203


>gi|15924234|ref|NP_371768.1| ribonuclease HII [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926827|ref|NP_374360.1| ribonuclease HII [Staphylococcus aureus subsp. aureus N315]
 gi|148267735|ref|YP_001246678.1| ribonuclease HII [Staphylococcus aureus subsp. aureus JH9]
 gi|150393793|ref|YP_001316468.1| ribonuclease HII [Staphylococcus aureus subsp. aureus JH1]
 gi|156979565|ref|YP_001441824.1| ribonuclease HII [Staphylococcus aureus subsp. aureus Mu3]
 gi|255006031|ref|ZP_05144632.2| ribonuclease HII [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257795700|ref|ZP_05644679.1| ribonuclease HII [Staphylococcus aureus A9781]
 gi|258415924|ref|ZP_05682194.1| ribonuclease HII [Staphylococcus aureus A9763]
 gi|258421686|ref|ZP_05684610.1| ribonuclease HII [Staphylococcus aureus A9719]
 gi|258434842|ref|ZP_05688916.1| ribonuclease HII [Staphylococcus aureus A9299]
 gi|258444582|ref|ZP_05692911.1| ribonuclease HII [Staphylococcus aureus A8115]
 gi|258447585|ref|ZP_05695729.1| ribonuclease HII [Staphylococcus aureus A6300]
 gi|258449427|ref|ZP_05697530.1| ribonuclease HII [Staphylococcus aureus A6224]
 gi|258454806|ref|ZP_05702770.1| ribonuclease HII [Staphylococcus aureus A5937]
 gi|269202860|ref|YP_003282129.1| ribonuclease HII [Staphylococcus aureus subsp. aureus ED98]
 gi|282892732|ref|ZP_06300967.1| ribonuclease HII [Staphylococcus aureus A8117]
 gi|282927586|ref|ZP_06335202.1| ribonuclease HII [Staphylococcus aureus A10102]
 gi|295406179|ref|ZP_06815986.1| ribonuclease HII [Staphylococcus aureus A8819]
 gi|296274801|ref|ZP_06857308.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MR1]
 gi|297244407|ref|ZP_06928290.1| ribonuclease HII [Staphylococcus aureus A8796]
 gi|54039252|sp|P66676|RNH2_STAAN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|54042175|sp|P66675|RNH2_STAAM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166226657|sp|A7X1L7|RNH2_STAA1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|189043663|sp|A6U163|RNH2_STAA2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|189043664|sp|A5ISC9|RNH2_STAA9 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|13701044|dbj|BAB42339.1| RNase HII [Staphylococcus aureus subsp. aureus N315]
 gi|14247014|dbj|BAB57406.1| RNase HII [Staphylococcus aureus subsp. aureus Mu50]
 gi|147740804|gb|ABQ49102.1| RNase HII [Staphylococcus aureus subsp. aureus JH9]
 gi|149946245|gb|ABR52181.1| Ribonuclease H [Staphylococcus aureus subsp. aureus JH1]
 gi|156721700|dbj|BAF78117.1| RNase HII [Staphylococcus aureus subsp. aureus Mu3]
 gi|257789672|gb|EEV28012.1| ribonuclease HII [Staphylococcus aureus A9781]
 gi|257839260|gb|EEV63734.1| ribonuclease HII [Staphylococcus aureus A9763]
 gi|257842372|gb|EEV66797.1| ribonuclease HII [Staphylococcus aureus A9719]
 gi|257849203|gb|EEV73185.1| ribonuclease HII [Staphylococcus aureus A9299]
 gi|257850075|gb|EEV74028.1| ribonuclease HII [Staphylococcus aureus A8115]
 gi|257853776|gb|EEV76735.1| ribonuclease HII [Staphylococcus aureus A6300]
 gi|257857415|gb|EEV80313.1| ribonuclease HII [Staphylococcus aureus A6224]
 gi|257863189|gb|EEV85953.1| ribonuclease HII [Staphylococcus aureus A5937]
 gi|262075150|gb|ACY11123.1| ribonuclease HII [Staphylococcus aureus subsp. aureus ED98]
 gi|282590589|gb|EFB95666.1| ribonuclease HII [Staphylococcus aureus A10102]
 gi|282764729|gb|EFC04854.1| ribonuclease HII [Staphylococcus aureus A8117]
 gi|285816926|gb|ADC37413.1| Ribonuclease HII [Staphylococcus aureus 04-02981]
 gi|294968767|gb|EFG44789.1| ribonuclease HII [Staphylococcus aureus A8819]
 gi|297178437|gb|EFH37683.1| ribonuclease HII [Staphylococcus aureus A8796]
 gi|312829638|emb|CBX34480.1| ribonuclease HII (RNase HII) [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315131038|gb|EFT87022.1| RNase HII [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727171|gb|EGG63627.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 21172]
          Length = 255

 Score =  234 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +++E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPITK 115

Query: 68  REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP    ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ + GY T +H  
Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G    HR +F P+++L
Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254


>gi|56750670|ref|YP_171371.1| ribonuclease HII [Synechococcus elongatus PCC 6301]
 gi|81299688|ref|YP_399896.1| ribonuclease HII [Synechococcus elongatus PCC 7942]
 gi|81596478|sp|Q5N4B8|RNH2_SYNP6 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|97189413|sp|Q31PW0|RNH2_SYNE7 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|56685629|dbj|BAD78851.1| ribonuclease HII [Synechococcus elongatus PCC 6301]
 gi|81168569|gb|ABB56909.1| RNase HII [Synechococcus elongatus PCC 7942]
          Length = 215

 Score =  234 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 80/189 (42%), Positives = 109/189 (57%), Gaps = 7/189 (3%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA 79
             VAG+DEVGRG L GPVV AA+IL    I      G+ DSK++S ++R++LY  I   A
Sbjct: 19  QTVAGVDEVGRGCLFGPVVTAAVILPETAIAPLQQAGVTDSKRLSQRQRQQLYPLICEVA 78

Query: 80  II-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           +      AS   I++ NI +AT  A+  A+  L       LIDG      L      VI+
Sbjct: 79  LATGWGLASVAEIERWNILQATFLAMRRAIAKLDRPISRCLIDGNQQVPQLTYPQTTVIQ 138

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD   ++IAAASI+AKV RDRL+    ++YP Y    H GY TA+H+Q I + GP+ +HR
Sbjct: 139 GDRHCITIAAASILAKVWRDRLIERLDERYPGYALGRHKGYGTAQHRQAILQLGPTPLHR 198

Query: 199 LTFRPLRNL 207
           + F  LR+L
Sbjct: 199 IRF--LRSL 205


>gi|238019255|ref|ZP_04599681.1| hypothetical protein VEIDISOL_01119 [Veillonella dispar ATCC 17748]
 gi|237863954|gb|EEP65244.1| hypothetical protein VEIDISOL_01119 [Veillonella dispar ATCC 17748]
          Length = 265

 Score =  234 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 88/197 (44%), Positives = 131/197 (66%), Gaps = 2/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           ++ E M  ++ M+ VAG+DEVGRG +AGPV VAA+IL P  +  G+NDSKK++ +KRE L
Sbjct: 63  YDYEGMFYDQGMYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKRETL 122

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I   A+ +S  S   + ID+ NI++AT  A+Y A+  L V   + + D   +P DL 
Sbjct: 123 YDIIMKEAVAVSCISYGPEKIDELNIYEATRQAMYEAIRTLSVPAEAVVADAMKLP-DLT 181

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGDS S +IAAASIIAKVTRDR M+    +YP YGF  H GY T  H++ +++
Sbjct: 182 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDDEYPGYGFGIHKGYYTELHKEAVEQ 241

Query: 191 KGPSCIHRLTFRPLRNL 207
           +G + +HR +F P++++
Sbjct: 242 QGVTPLHRKSFEPIKSI 258


>gi|28378510|ref|NP_785402.1| ribonuclease HII [Lactobacillus plantarum WCFS1]
 gi|38258518|sp|Q88W20|RNH2_LACPL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|28271346|emb|CAD64251.1| ribonuclease HII [Lactobacillus plantarum WCFS1]
          Length = 255

 Score =  234 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 89/197 (45%), Positives = 119/197 (60%), Gaps = 3/197 (1%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           H  LE          VAGIDEVGRG LAGPVV AA++LD +     +NDSK+++ KKR  
Sbjct: 57  HMRLERDFWAHGGQYVAGIDEVGRGPLAGPVVTAAVVLDDHFDLLEVNDSKQLTAKKRAA 116

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L  +I   A+ + I  A  Q ID+ NI++AT  A+  AV NL V P   L+D   +P  +
Sbjct: 117 LMPRILEEAVAVGIGVADAQQIDQLNIYEATRVAMAQAVRNLSVRPTRLLVDAMQVP--V 174

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P +   +IKGD+ S SI+AASI+AKV RD LM +  + YP Y F  ++GY TAKH   + 
Sbjct: 175 PIEQTRLIKGDAKSASISAASIVAKVVRDHLMTMYDQVYPGYDFADNMGYGTAKHLAGLA 234

Query: 190 EKGPSCIHRLTFRPLRN 206
             G + IHR +F P+RN
Sbjct: 235 SLGATPIHRQSFSPVRN 251


>gi|49483407|ref|YP_040631.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425298|ref|ZP_05601723.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427958|ref|ZP_05604356.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430591|ref|ZP_05606973.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433352|ref|ZP_05609710.1| ribonuclease HII [Staphylococcus aureus subsp. aureus E1410]
 gi|257436194|ref|ZP_05612241.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M876]
 gi|282903799|ref|ZP_06311687.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C160]
 gi|282905562|ref|ZP_06313417.1| ribonuclease HII [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908537|ref|ZP_06316367.1| ribonuclease HII [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910816|ref|ZP_06318619.1| ribonuclease HII [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914021|ref|ZP_06321808.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M899]
 gi|282918943|ref|ZP_06326678.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C427]
 gi|282924066|ref|ZP_06331742.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C101]
 gi|283957987|ref|ZP_06375438.1| ribonuclease HII [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293501052|ref|ZP_06666903.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510014|ref|ZP_06668722.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M809]
 gi|293526601|ref|ZP_06671286.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M1015]
 gi|295427731|ref|ZP_06820363.1| ribonuclease HII [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297591311|ref|ZP_06949949.1| ribonuclease H [Staphylococcus aureus subsp. aureus MN8]
 gi|56749568|sp|Q6GHJ1|RNH2_STAAR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|49241536|emb|CAG40222.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271755|gb|EEV03893.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274799|gb|EEV06286.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278719|gb|EEV09338.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281445|gb|EEV11582.1| ribonuclease HII [Staphylococcus aureus subsp. aureus E1410]
 gi|257284476|gb|EEV14596.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M876]
 gi|282314038|gb|EFB44430.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C101]
 gi|282316753|gb|EFB47127.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C427]
 gi|282322089|gb|EFB52413.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M899]
 gi|282325421|gb|EFB55730.1| ribonuclease HII [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327599|gb|EFB57882.1| ribonuclease HII [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330854|gb|EFB60368.1| ribonuclease HII [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595417|gb|EFC00381.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C160]
 gi|283790136|gb|EFC28953.1| ribonuclease HII [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290920673|gb|EFD97736.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M1015]
 gi|291096057|gb|EFE26318.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466958|gb|EFF09476.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M809]
 gi|295128089|gb|EFG57723.1| ribonuclease HII [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297576197|gb|EFH94913.1| ribonuclease H [Staphylococcus aureus subsp. aureus MN8]
 gi|312438378|gb|ADQ77449.1| ribonuclease HII [Staphylococcus aureus subsp. aureus TCH60]
 gi|315194133|gb|EFU24526.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 255

 Score =  234 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 86/201 (42%), Positives = 121/201 (60%), Gaps = 4/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E ++ E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILTENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115

Query: 68  REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP    ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ + GY T +H  
Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G    HR +F P+++L
Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254


>gi|21282856|ref|NP_645944.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MW2]
 gi|49486083|ref|YP_043304.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297208110|ref|ZP_06924541.1| ribonuclease H [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300912191|ref|ZP_07129634.1| ribonuclease H [Staphylococcus aureus subsp. aureus TCH70]
 gi|38258614|sp|Q8NX02|RNH2_STAAW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|56749521|sp|Q6G9W9|RNH2_STAAS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|21204295|dbj|BAB94992.1| RNase HII [Staphylococcus aureus subsp. aureus MW2]
 gi|49244526|emb|CAG42955.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296887353|gb|EFH26255.1| ribonuclease H [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300886437|gb|EFK81639.1| ribonuclease H [Staphylococcus aureus subsp. aureus TCH70]
          Length = 255

 Score =  234 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +++E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115

Query: 68  REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP    ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ + GY T +H  
Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G    HR +F P+++L
Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254


>gi|217970566|ref|YP_002355800.1| ribonuclease HII [Thauera sp. MZ1T]
 gi|217507893|gb|ACK54904.1| Ribonuclease H [Thauera sp. MZ1T]
          Length = 203

 Score =  234 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 80/184 (43%), Positives = 108/184 (58%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            + G+DE GRG L GPVV AA+ILDP     G+ DSKK+S   RE L   I + A+  ++
Sbjct: 15  LICGVDEAGRGPLCGPVVAAAVILDPARPIEGLADSKKLSEAARERLAPLIRARALAWAV 74

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + AS + ID+ NI  AT+ A+  AV  L + P    IDG   P+ LP  A A++KGD+  
Sbjct: 75  AEASVEEIDRLNILHATMLAMQRAVMALGIAPAEVRIDGNRCPK-LPYPARAIVKGDATE 133

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AK  RD  MR    ++P YG  +H GYPTA H   +   G    HR +F P
Sbjct: 134 PSISAASILAKTARDAAMRELDAQWPQYGLAAHKGYPTAAHLAALAAHGVQAFHRRSFAP 193

Query: 204 LRNL 207
           ++ L
Sbjct: 194 VKKL 197


>gi|313888218|ref|ZP_07821892.1| ribonuclease HII [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845908|gb|EFR33295.1| ribonuclease HII [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 205

 Score =  234 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 87/203 (42%), Positives = 116/203 (57%), Gaps = 11/203 (5%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +  E    EK    + GIDEVGRG L G VV  A+I+       G+NDSKK+S KKRE L
Sbjct: 4   YNFEEEYYEKGYKNICGIDEVGRGCLFGDVVSCAVIMPRGKYIEGVNDSKKLSPKKREAL 63

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL------QVIPRSALIDGRS 124
           Y KI  SAI + I  A+   IDK NI  AT  ++ +A+ENL      ++     LID  +
Sbjct: 64  YLKILESAIAVGIGRANADIIDKVNIRMATHISMINALENLRDSENNKIEADCVLIDAET 123

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           I   +     A++KGD    SIA ASI+AKV RD L +   ++YP YG + H GY T  H
Sbjct: 124 IETGIF--QKAIVKGDESCYSIACASIVAKVYRDNLCKKWAEEYPQYGLEKHKGYATKYH 181

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
           ++ +K  GPS +HR TF  L+N+
Sbjct: 182 REALKAYGPSDMHRKTF--LKNI 202


>gi|254556724|ref|YP_003063141.1| ribonuclease HII [Lactobacillus plantarum JDM1]
 gi|254045651|gb|ACT62444.1| ribonuclease HII [Lactobacillus plantarum JDM1]
          Length = 255

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 89/197 (45%), Positives = 119/197 (60%), Gaps = 3/197 (1%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           H  LE          VAGIDEVGRG LAGPVV AA++LD +     +NDSK+++ KKR  
Sbjct: 57  HMRLERDFWAHGGQYVAGIDEVGRGPLAGPVVTAAVVLDDHFDLLEVNDSKQLTAKKRAA 116

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L  +I   A+ + I  A  Q ID+ NI++AT  A+  AV NL V P   L+D   +P  +
Sbjct: 117 LMPRILEEAVAVGIGVADAQQIDQLNIYEATRVAMAQAVRNLSVRPTRLLVDAMQVP--V 174

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P +   +IKGD+ S SI+AASI+AKV RD LM +  + YP Y F  ++GY TAKH   + 
Sbjct: 175 PIEQTRLIKGDAKSASISAASIVAKVVRDHLMTMYDQVYPGYDFADNMGYGTAKHLAGLA 234

Query: 190 EKGPSCIHRLTFRPLRN 206
             G + IHR +F P+RN
Sbjct: 235 SLGATPIHRQSFSPVRN 251


>gi|187251038|ref|YP_001875520.1| ribonuclease H [Elusimicrobium minutum Pei191]
 gi|186971198|gb|ACC98183.1| Ribonuclease H [Elusimicrobium minutum Pei191]
          Length = 210

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 91/207 (43%), Positives = 121/207 (58%), Gaps = 6/207 (2%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKI 63
           + E   F+ E  + +KN   + GIDE GRG LAGPVV  A+       ++   +NDSKK+
Sbjct: 1   MNELQRFDCE--ILQKNSCALIGIDEAGRGPLAGPVVACAVCAPKEIYHLFEDVNDSKKL 58

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSALID 121
           +  KRE++Y +I    I   +  AS + ID+ NI +AT  A+  A +  L +    AL+D
Sbjct: 59  TDVKREKIYARINGYKIAYGVGFASAKEIDEINILQATFLAMRRACQKFLDINEALALVD 118

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           G    +D       VI GD+ S SIA AS+IAKV RDR MR AH+ YP YGFD H GY +
Sbjct: 119 GNHKIKDFLLPQQTVIDGDAKSFSIAMASVIAKVHRDRYMRKAHELYPVYGFDGHKGYGS 178

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNLS 208
            KH   IKE GP   HR+TF PL+NL+
Sbjct: 179 GKHIAAIKEHGPCKEHRMTFAPLKNLN 205


>gi|91762761|ref|ZP_01264726.1| Ribonuclease HII (RNase HII) [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718563|gb|EAS85213.1| Ribonuclease HII  (RNase HII) [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 186

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 80/185 (43%), Positives = 117/185 (63%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82
           M  +AG+DEVGRG+L GPV  AAIIL+ +     + DSK ++  KREEL + I  ++I +
Sbjct: 1   MKILAGVDEVGRGSLIGPVYAAAIILNNSIDKKLLKDSKTLTKDKREELEKYIKKNSIWA 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I  AS + I+K NI +A+L A+  A+  L+  P   LIDG  +P+    +   VIKGD  
Sbjct: 61  IGQASTKEIEKINILQASLLAMKRAILKLKTKPSLVLIDGNKLPDLKNYKLKYVIKGDQK 120

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             SI+AASI+AKV+RD+ +    KK+ +YG+D++ GY T +H   IK+ G +  HR TF 
Sbjct: 121 IPSISAASIVAKVSRDKFITKLSKKFNNYGWDTNSGYGTKEHLNAIKKFGITKYHRKTFS 180

Query: 203 PLRNL 207
           P+ +L
Sbjct: 181 PICDL 185


>gi|46398965|gb|AAS92168.1| RNase H ribonuclease [Legionella pneumophila]
 gi|46398967|gb|AAS92169.1| RNase H ribonuclease [Legionella pneumophila]
          Length = 191

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 80/182 (43%), Positives = 109/182 (59%), Gaps = 4/182 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DEVGRG LAG VV AA+IL       G+ DSKK+S K+R  L  +I   A+  +   
Sbjct: 10  AGVDEVGRGPLAGAVVTAAVILKK--PIDGLTDSKKLSSKQRNLLAIRIKEEALAFAYGR 67

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A  + ID+ NIH ATL A+  AVE L + P + ++DG   P+ L     A+++GDS+   
Sbjct: 68  AEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVVVDGAFTPQ-LNVPCKAIVQGDSLIPE 126

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AKV RD  M    K YP YGF  H GY T  H++ +   GP  IHR ++ P+ 
Sbjct: 127 ISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYSPVA 186

Query: 206 NL 207
           +L
Sbjct: 187 DL 188


>gi|39995755|ref|NP_951706.1| ribonuclease HII [Geobacter sulfurreducens PCA]
 gi|81703214|sp|Q74FG0|RNH2_GEOSL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|39982519|gb|AAR33979.1| ribonuclease HII [Geobacter sulfurreducens PCA]
          Length = 217

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 95/201 (47%), Positives = 123/201 (61%), Gaps = 2/201 (0%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           P+   ++ E+    +    +AGIDE GRG LAGPVV AA+IL       G++DSKK++  
Sbjct: 10  PQPAVWDFESRAARRGYRTIAGIDEAGRGPLAGPVVAAAVILPFGTDLPGVDDSKKLTPA 69

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R++L+  I  +A+ I +  A H+ ID+ NI +ATL A+  AVE L   P   L+DG S 
Sbjct: 70  RRDDLFTLIQGTALAIGVGVADHKVIDRINILQATLAAMREAVECLTDPPDYLLVDGIS- 128

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  LP     + KGDS S+SIAAASIIAKVTRDRLM    + YP YGF  H GY +A H 
Sbjct: 129 PVPLPVAQQTIKKGDSASISIAAASIIAKVTRDRLMAEYDQLYPGYGFAEHKGYGSASHM 188

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
             I   GPS IHR TFR +R 
Sbjct: 189 AAIAALGPSPIHRTTFRGVRE 209


>gi|323484795|ref|ZP_08090152.1| ribonuclease HII [Clostridium symbiosum WAL-14163]
 gi|323401901|gb|EGA94242.1| ribonuclease HII [Clostridium symbiosum WAL-14163]
          Length = 219

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 83/190 (43%), Positives = 109/190 (57%), Gaps = 3/190 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E    E     + GIDE GRG LAGPVV AA +L  + +   +NDSKK+S ++REEL+
Sbjct: 21  EYERKYEE--YSVICGIDEAGRGPLAGPVVAAAAVLPKDAVILWLNDSKKLSERRREELF 78

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I   A+   +   S   ID+ NI +AT +A+  AV  L   P   L D   IP     
Sbjct: 79  LEIREKAVAYGVGIVSPAVIDEINILQATYEAMRQAVSQLPAEPDIFLNDAVMIPGINDK 138

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   +IKGD+ S+SIAAAS++AKVTRD +M    K YP+YGF  H GY T  H   I+E 
Sbjct: 139 KQVRIIKGDAKSVSIAAASVLAKVTRDHMMEEYDKLYPEYGFAKHKGYGTKAHMDAIREF 198

Query: 192 GPSCIHRLTF 201
           G   IHR +F
Sbjct: 199 GVCPIHRRSF 208


>gi|308068634|ref|YP_003870239.1| ribonuclease HII [Paenibacillus polymyxa E681]
 gi|305857913|gb|ADM69701.1| Ribonuclease HII (RNase HII) [Paenibacillus polymyxa E681]
          Length = 215

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 86/203 (42%), Positives = 114/203 (56%), Gaps = 4/203 (1%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           M    I  +     E    E++   +AGIDEVGRG L G VV AA+IL    +  G++DS
Sbjct: 1   MENKEIVAKDMLHYEKKCWEQSCERIAGIDEVGRGCLFGDVVAAAVILPVGELLEGVDDS 60

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           KK++ KKRE  YE I   AI + +       ID  NI +A   A+  A+E L V P   L
Sbjct: 61  KKLTDKKREAYYELIMEKAIAVGVGYVDAHTIDDINIKQAARLAMKQAIEALHVSPDYLL 120

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR-IAHKKYPDYGFDSHVG 178
           +D   +  D+     ++IKGD+ S SIAAASIIAKVTRDRL +     KYP+YG   H G
Sbjct: 121 VDAEKV--DVSIPQLSIIKGDANSQSIAAASIIAKVTRDRLCKGEWDAKYPEYGIGIHKG 178

Query: 179 YPTAKHQQVIKEKGPSCIHRLTF 201
           Y T  H++ I   GP+ +HR +F
Sbjct: 179 YATKLHREQILALGPTEMHRRSF 201


>gi|126641188|ref|YP_001084172.1| ribonuclease HII [Acinetobacter baumannii ATCC 17978]
          Length = 174

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 107/169 (63%), Gaps = 1/169 (0%)

Query: 39  GPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIH 97
           G VV AA+ILDPNN   G+NDSKK++ KKRE+L+ +I   A+  SI+ A+H  ID+ NI 
Sbjct: 2   GSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWSIAEATHAEIDELNIL 61

Query: 98  KATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTR 157
           +AT  A+  AVE L+  P+  ++DG  IP+ +     A++ GD+    I+AASI+AKVTR
Sbjct: 62  QATFLAMQRAVEGLKTQPQKVIVDGNQIPKGIIIPCEAIVGGDASHAEISAASILAKVTR 121

Query: 158 DRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           DR M    ++YP +GF  H GYPT  H + I   G    HR ++ P++ 
Sbjct: 122 DRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYAPVKR 170


>gi|317152482|ref|YP_004120530.1| Ribonuclease H [Desulfovibrio aespoeensis Aspo-2]
 gi|316942733|gb|ADU61784.1| Ribonuclease H [Desulfovibrio aespoeensis Aspo-2]
          Length = 207

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 80/185 (43%), Positives = 106/185 (57%), Gaps = 5/185 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DE GRG LAGPVV  A IL       G+NDSK++S  KRE LY  I S A+  ++ 
Sbjct: 11  IAGVDEAGRGCLAGPVVAGACILPQTYDLPGLNDSKQLSAAKRETLYPLIRSQAVAWAVG 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE----DLPCQAFAVIKGD 140
            +    ID+ NI +AT  A+  AV  L++ PR   IDG  I       L      VI GD
Sbjct: 71  LSWPGEIDRVNILQATFLAMGRAVRALKLSPRFLRIDGNKIIPAHALGLGVSQEWVIGGD 130

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
               +I+AAS++AK  RDRLM     +YP YG + H+GY T +H + +   GP  +HRLT
Sbjct: 131 GSVPAISAASVLAKTFRDRLMVKLAARYPGYGLERHMGYGTKEHMEAVARLGPCAMHRLT 190

Query: 201 FRPLR 205
           FR +R
Sbjct: 191 FRGVR 195


>gi|326798587|ref|YP_004316406.1| ribonuclease H [Sphingobacterium sp. 21]
 gi|326549351|gb|ADZ77736.1| Ribonuclease H [Sphingobacterium sp. 21]
          Length = 200

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 71/183 (38%), Positives = 104/183 (56%), Gaps = 1/183 (0%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +N    AG DE GRG LAGPV  AA+I   +     +NDSK +S  +R +L E I + A+
Sbjct: 7   QNELIEAGCDEAGRGCLAGPVFAAAVIFSSSFKHGILNDSKILSAAQRYDLREMIENEAL 66

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             +++SAS + ID+ NI  A+  A++ A++ L++     L+DG             VIKG
Sbjct: 67  AFAVASASAEEIDQINILNASFLAMHRALDALKMQAEYILVDGNRFRRYQNIPHQCVIKG 126

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D   LSIAAASI+AK  RD  M     ++P+Y +  + GYPT +H+  + + G +  HR 
Sbjct: 127 DGKYLSIAAASILAKTYRDDYMDNLANEHPEYDWLKNKGYPTKRHRDAVLKYGLTPHHRK 186

Query: 200 TFR 202
           TFR
Sbjct: 187 TFR 189


>gi|298504765|gb|ADI83488.1| ribonuclease HII [Geobacter sulfurreducens KN400]
          Length = 211

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 95/201 (47%), Positives = 123/201 (61%), Gaps = 2/201 (0%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           P+   ++ E+    +    +AGIDE GRG LAGPVV AA+IL       G++DSKK++  
Sbjct: 10  PQPAVWDFESRAARRGYRTIAGIDEAGRGPLAGPVVAAAVILPFGTDLPGVDDSKKLTPA 69

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R++L+  I  +A+ I +  A H+ ID+ NI +ATL A+  AVE L   P   L+DG S 
Sbjct: 70  RRDDLFTLIQGTALAIGVGVADHKVIDRINILQATLAAMREAVECLTDPPDYLLVDGIS- 128

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  LP     + KGDS S+SIAAASIIAKVTRDRLM    + YP YGF  H GY +A H 
Sbjct: 129 PVPLPVAQQTIKKGDSASISIAAASIIAKVTRDRLMAEYDQLYPGYGFAEHKGYGSASHM 188

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
             I   GPS IHR TFR +R 
Sbjct: 189 AAIAALGPSPIHRTTFRGVRE 209


>gi|153831009|ref|ZP_01983676.1| ribonuclease HII [Vibrio cholerae 623-39]
 gi|148873517|gb|EDL71652.1| ribonuclease HII [Vibrio cholerae 623-39]
          Length = 180

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 86/181 (47%), Positives = 111/181 (61%), Gaps = 2/181 (1%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           + ++P  EL           +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S 
Sbjct: 1   MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSE 60

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           KKR  L+ +I   A+  ++   S Q ID+ NI +AT+ A+  AV  L++ P   LIDG  
Sbjct: 61  KKRLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK 120

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           IP+ LP  A AV+KGD     I+AASIIAKV RD+ M    K+YP +GF  H GYPTA H
Sbjct: 121 IPK-LPMAAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179

Query: 185 Q 185
            
Sbjct: 180 L 180


>gi|152999991|ref|YP_001365672.1| ribonuclease HII [Shewanella baltica OS185]
 gi|166226651|sp|A6WLC0|RNH2_SHEB8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|151364609|gb|ABS07609.1| Ribonuclease H [Shewanella baltica OS185]
          Length = 210

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 87/199 (43%), Positives = 118/199 (59%), Gaps = 6/199 (3%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           EA +   +   +AG+DEVGRG L G VV AA+ILDP+    G+NDSKK+S K+RE L+++
Sbjct: 9   EADLLAFSTGLIAGVDEVGRGPLVGDVVTAAVILDPSKPISGLNDSKKLSEKRREALFDE 68

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-----ED 128
           I   A+   +  AS   ID+ NI  AT+ A+  AV  L + P   L+DG   P       
Sbjct: 69  ICDKALCYQVGRASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRSPIFVAHNG 128

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
               + ++IKGD +  SI+AASIIAKVTRDR M +    YP YGF  H GYPT  H + I
Sbjct: 129 AELTSHSIIKGDGLIASISAASIIAKVTRDREMDVLDAAYPQYGFAKHKGYPTKAHFEAI 188

Query: 189 KEKGPSCIHRLTFRPLRNL 207
            E G    +R +F+P++ L
Sbjct: 189 AEHGVFDQYRKSFKPVKAL 207


>gi|188586001|ref|YP_001917546.1| RNase HII [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|229470478|sp|B2A2P0|RNH2_NATTJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|179350688|gb|ACB84958.1| RNase HII [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 198

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 82/187 (43%), Positives = 115/187 (61%), Gaps = 3/187 (1%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSSAI- 80
           M    GIDE G GA A  V V+A +LDP       + DSK+++ KKRE L E+I   A+ 
Sbjct: 1   MMYYCGIDEAGFGAGAAQVYVSACVLDPQKPINESLTDSKQLTPKKRELLAEEIKQDALT 60

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             I++AS + I+K NI KAT+ A+  ++E L V P    IDG + PE +P     V+KGD
Sbjct: 61  WCIATASVEEIEKLNIRKATILAMKRSLEGLTVKPDMVYIDGINSPE-VPFPVETVVKGD 119

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S   +I+AASI+AKV RD  M    ++YP+YGF  H GY T  H + I++ GPS IHR T
Sbjct: 120 SKIPAISAASILAKVARDNRMLEYDEQYPEYGFKDHKGYLTKNHIKAIQKYGPSPIHRKT 179

Query: 201 FRPLRNL 207
           ++P++ +
Sbjct: 180 YKPIKKI 186


>gi|83945341|ref|ZP_00957689.1| ribonuclease HII [Oceanicaulis alexandrii HTCC2633]
 gi|83851175|gb|EAP89032.1| ribonuclease HII [Oceanicaulis alexandrii HTCC2633]
          Length = 202

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 77/183 (42%), Positives = 107/183 (58%), Gaps = 1/183 (0%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISI 83
            +AG+DE GRG LAGPVV AA+IL  N      ++DSKK+S K+R  L   I + A + +
Sbjct: 9   LIAGVDEAGRGPLAGPVVCAAVILPANFSALDQLDDSKKLSEKRRAALSAIIRAEARVGV 68

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID+ N+  AT+ A+  AVE L VIP   LIDG  +P  L   A A++ GD   
Sbjct: 69  GIAEPVEIDRLNVLHATMAAMVRAVEGLGVIPDEILIDGNRVPAGLSAPARAIVGGDGRE 128

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I AASIIAK  RD++M  A  ++  YG   H GYP+  H+  ++  G + IHRL++ P
Sbjct: 129 ACIGAASIIAKTLRDQIMIEAENRFSGYGLAGHKGYPSPSHKAALENLGAAPIHRLSYAP 188

Query: 204 LRN 206
           ++ 
Sbjct: 189 VQQ 191


>gi|71275625|ref|ZP_00651910.1| Ribonuclease H [Xylella fastidiosa Dixon]
 gi|71899522|ref|ZP_00681679.1| Ribonuclease H [Xylella fastidiosa Ann-1]
 gi|170729566|ref|YP_001774999.1| ribonuclease HII [Xylella fastidiosa M12]
 gi|238687911|sp|B0U235|RNH2_XYLFM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|71163516|gb|EAO13233.1| Ribonuclease H [Xylella fastidiosa Dixon]
 gi|71730742|gb|EAO32816.1| Ribonuclease H [Xylella fastidiosa Ann-1]
 gi|167964359|gb|ACA11369.1| Ribonuclease H [Xylella fastidiosa M12]
          Length = 234

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 87/194 (44%), Positives = 117/194 (60%), Gaps = 2/194 (1%)

Query: 16  AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEK 74
             +   N   VAG+DE GRG LAGPVVVAA++ DP+     G+NDSK++S   RE LY  
Sbjct: 8   QHLLNSNTALVAGVDEAGRGPLAGPVVVAAVVFDPSQPRINGLNDSKQLSPACRERLYAH 67

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   A+   +       ID  NI++AT+  +  AVE +  + +SA IDG  +P++LPC A
Sbjct: 68  IVERALAYKVVMIDSTQIDTLNIYQATMLGMRLAVEGVAHVAKSARIDGNRLPKNLPCPA 127

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            A++ GD+   +I AASI+AKVTRDR M   H +YP YGFD H GY T  H   + E GP
Sbjct: 128 EALVGGDARDPTIMAASILAKVTRDRHMVELHLQYPHYGFDKHKGYGTPAHLAALAEHGP 187

Query: 194 SCIHRLTFRPLRNL 207
              HR +F P+R +
Sbjct: 188 CLEHRQSFAPVRRM 201


>gi|290894532|ref|ZP_06557482.1| rnhB protein [Listeria monocytogenes FSL J2-071]
 gi|290555913|gb|EFD89477.1| rnhB protein [Listeria monocytogenes FSL J2-071]
          Length = 261

 Score =  234 bits (597), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 87/195 (44%), Positives = 122/195 (62%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E  + ++    +AG+DEVGRG LAGPVV AA+IL  +    GINDSK++S  KR+ LY
Sbjct: 60  QYETDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALY 119

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E I + AI + +    H  ID+ NI++AT  A+  A++ LQ  P   LID    P     
Sbjct: 120 ETIQTEAIAVGVGIIEHNVIDQVNIYEATKLAMRAALDQLQPEPDFVLIDAM--PLKYSD 177

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASIIAKVTRDRLM++  + YP Y F +++GY T KH   +   
Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDETYPGYDFANNMGYGTKKHLHGLDTI 237

Query: 192 GPSCIHRLTFRPLRN 206
           G   IHR++F P++ 
Sbjct: 238 GICPIHRISFAPVKE 252


>gi|306842323|ref|ZP_07474982.1| ribonuclease HII [Brucella sp. BO2]
 gi|306287539|gb|EFM58998.1| ribonuclease HII [Brucella sp. BO2]
          Length = 220

 Score =  234 bits (597), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 97/203 (47%), Positives = 137/203 (67%), Gaps = 2/203 (0%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
            +P  P F  E  + ++ +  +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++
Sbjct: 13  DLPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLT 72

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
             +RE LYE I + AI +S++S S + ID  +I KA L+A+  AV  L + P  AL+DGR
Sbjct: 73  AARREALYEIILTKAITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGR 132

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +P  LPC   A++KGD  S+SIAAASI+AKVTRDR+M  A   +P YG + H GY T K
Sbjct: 133 DVPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYGTQK 192

Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205
           H+  I+ +GP   +HR TF P++
Sbjct: 193 HRAAIESEGPVPGLHRYTFAPIK 215


>gi|220928167|ref|YP_002505076.1| ribonuclease HII [Clostridium cellulolyticum H10]
 gi|254807971|sp|B8I7T9|RNH2_CLOCE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|219998495|gb|ACL75096.1| ribonuclease HII/HIII [Clostridium cellulolyticum H10]
          Length = 255

 Score =  234 bits (597), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 86/200 (43%), Positives = 119/200 (59%), Gaps = 4/200 (2%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +     E     +    +AG+DE GRG LAGPVV AA++L       GINDSKK+S  +R
Sbjct: 57  QKMLSFERQAISEGFNYIAGVDEAGRGPLAGPVVAAAVVLPNGLTIEGINDSKKLSESQR 116

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E+L+ +I   A+   IS    +YID+ NI  AT  A+  A+  L+      L+D   + +
Sbjct: 117 EKLFSEIKEKALSYGISVIDEKYIDEVNILNATKRAMTEALSQLEPTADCILLDAVRL-D 175

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           ++  +   +IKGDS+SLSIAAASI+AKVTRDRL+     KYP YGF +H GY T +H   
Sbjct: 176 NISTKQVPIIKGDSLSLSIAAASILAKVTRDRLLTEYDAKYPQYGFAAHKGYGTPQHISA 235

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           IK+ G   IHRL+F  ++N 
Sbjct: 236 IKKFGLCPIHRLSF--VKNF 253


>gi|294791913|ref|ZP_06757061.1| ribonuclease HII [Veillonella sp. 6_1_27]
 gi|294457143|gb|EFG25505.1| ribonuclease HII [Veillonella sp. 6_1_27]
          Length = 279

 Score =  234 bits (597), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 87/197 (44%), Positives = 131/197 (66%), Gaps = 2/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           ++ E M  ++ ++ VAG+DEVGRG +AGPV VAA+IL P  +  G+NDSKK++ +KRE L
Sbjct: 77  YDYEGMFYDQGIYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREAL 136

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I   A+ +S  S   + ID+ NI++AT  A+Y A+  L V   + + D   +P DL 
Sbjct: 137 YDIIMDEAVAVSCISYGPEKIDELNIYEATRQAMYEAIRTLSVPAEAVVADAMKLP-DLR 195

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGDS S +IAAASIIAKVTRDR M+    ++P YGF  H GY T  H++ I++
Sbjct: 196 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDDEFPGYGFGIHKGYYTELHKEAIEQ 255

Query: 191 KGPSCIHRLTFRPLRNL 207
           +G + +HR +F P++++
Sbjct: 256 QGVTPLHRKSFEPIKSI 272


>gi|117619478|ref|YP_855728.1| ribonuclease HII [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117560885|gb|ABK37833.1| ribonuclease HII [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 211

 Score =  234 bits (597), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 89/184 (48%), Positives = 119/184 (64%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG L G VV AA+ILDP N   G+NDSKK+S KKR  L+++I   A+  S
Sbjct: 24  RLVAGVDEVGRGPLVGDVVTAAVILDPANPIIGLNDSKKLSEKKRLALFDEIKEKALAWS 83

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  AS   ID+ NI  AT+ A+  AV  L + P    IDG   P  L  +A AV+KGDS+
Sbjct: 84  VGRASPAEIDELNILHATMLAMQRAVAGLSIAPELVFIDGNRCP-SLSMEARAVVKGDSL 142

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +I+AASI+AKVTRD  M     ++P+YGF  H GYPTA+H  ++ E+GP   +R +F+
Sbjct: 143 VAAISAASILAKVTRDAEMTELDSRHPEYGFARHKGYPTAEHLAILAERGPLPEYRKSFK 202

Query: 203 PLRN 206
           P+R 
Sbjct: 203 PVRR 206


>gi|167837027|ref|ZP_02463910.1| ribonuclease HII [Burkholderia thailandensis MSMB43]
          Length = 214

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 87/182 (47%), Positives = 121/182 (66%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            V G+DE GRG LAGPVV AA++LDP     G++DSK +S KKRE L+++I + A+   I
Sbjct: 27  IVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAHALGYCI 86

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS + ID  NI  AT+ A+  AVE L V P  A IDG   P  L  ++ A++ GD++ 
Sbjct: 87  ASASVEEIDTLNILHATMLAMKRAVEGLAVRPTLAKIDGNRCPA-LAIRSEAIVGGDALV 145

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+++P YGFD+H GY T +H   ++  GP   HR +F P
Sbjct: 146 PSISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALRAHGPCEHHRRSFAP 205

Query: 204 LR 205
           +R
Sbjct: 206 VR 207


>gi|317063087|ref|ZP_07927572.1| ribonuclease HII [Fusobacterium ulcerans ATCC 49185]
 gi|313688763|gb|EFS25598.1| ribonuclease HII [Fusobacterium ulcerans ATCC 49185]
          Length = 216

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 84/180 (46%), Positives = 109/180 (60%), Gaps = 4/180 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           + G+DE GRG LAG VV AA+ I D N+    INDSK+IS KKRE LY+ +     + + 
Sbjct: 31  IIGVDEAGRGPLAGSVVAAAVKIKDYNSDLDEINDSKQISEKKRERLYDVVKEHFYVGVG 90

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPR---SALIDGRSIPEDLPCQAFAVIKGDS 141
            A  + ID+ NI  AT  A+  A+ENL+         L+DG     +   +   ++KGD 
Sbjct: 91  VADAKEIDEINILNATFLAMRRALENLKKECEGEYLVLVDGNFKIREYKGRQEPIVKGDG 150

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            SLSIAAASIIAKVTRDR+MR    KYP YGF+ H GY T +H+  I+E G   IHR +F
Sbjct: 151 KSLSIAAASIIAKVTRDRMMREEAVKYPLYGFEKHKGYGTKQHRDAIEEHGVLDIHRKSF 210


>gi|113970962|ref|YP_734755.1| ribonuclease HII [Shewanella sp. MR-4]
 gi|123029487|sp|Q0HGW9|RNH2_SHESM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|113885646|gb|ABI39698.1| RNase HII [Shewanella sp. MR-4]
          Length = 209

 Score =  233 bits (596), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 85/189 (44%), Positives = 113/189 (59%), Gaps = 5/189 (2%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG L G VV AA+ILDPN    G+NDSKK++ K+RE L+++I   A+   
Sbjct: 18  GLVAGVDEVGRGPLVGDVVTAAVILDPNRPIAGLNDSKKLTEKRREALFDEICEKALSYH 77

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP----EDLPCQAFAVIK 138
           +  A+   ID+ NI  AT+ A+  AV  L   P   L+DG   P    + L   + +++K
Sbjct: 78  VGRATPSEIDELNILHATMLAMQRAVAGLARTPELVLVDGNRSPAFTHQGLSLTSHSIVK 137

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD +  SI+AASIIAKVTRDR M      YP YGF  H GYPT  H   I E G    +R
Sbjct: 138 GDGLIASISAASIIAKVTRDREMDALDAAYPQYGFAKHKGYPTKAHFDAIAEHGVFDQYR 197

Query: 199 LTFRPLRNL 207
            +F+P++ L
Sbjct: 198 KSFKPVKAL 206


>gi|15837643|ref|NP_298331.1| ribonuclease HII [Xylella fastidiosa 9a5c]
 gi|11387105|sp|Q9PEI7|RNH2_XYLFA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|9105983|gb|AAF83851.1|AE003941_5 ribonuclease HII [Xylella fastidiosa 9a5c]
          Length = 234

 Score =  233 bits (596), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 87/194 (44%), Positives = 117/194 (60%), Gaps = 2/194 (1%)

Query: 16  AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEK 74
             +   N   VAG+DE GRG LAGPVVVAA++ DP+     G+NDSK++S   RE LY  
Sbjct: 8   QHLPSSNTALVAGVDEAGRGPLAGPVVVAAVVFDPSQPRINGLNDSKQLSPACRERLYAH 67

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   A+   +       ID  NI++AT+  +  AVE +  + +SA IDG  +P++LPC A
Sbjct: 68  IVERALAYKVVMIDSTQIDTLNIYQATMLGMRLAVEGVAHVAKSARIDGNRLPKNLPCPA 127

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            A++ GD+   +I AASI+AKVTRDR M   H +YP YGFD H GY T  H   + E GP
Sbjct: 128 EALVGGDARDRTIMAASILAKVTRDRHMVELHLQYPHYGFDKHKGYGTPAHLAALAEHGP 187

Query: 194 SCIHRLTFRPLRNL 207
              HR +F P+R +
Sbjct: 188 CLEHRRSFAPVRKM 201


>gi|261366997|ref|ZP_05979880.1| ribonuclease HII [Subdoligranulum variabile DSM 15176]
 gi|282571115|gb|EFB76650.1| ribonuclease HII [Subdoligranulum variabile DSM 15176]
          Length = 201

 Score =  233 bits (596), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 90/191 (47%), Positives = 116/191 (60%), Gaps = 4/191 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F+ E   R      V G+DE GRG L GPV  AA+ILDP++   GINDSKK+S K+RE L
Sbjct: 4   FDAEQCAR---FGVVCGVDEAGRGPLCGPVCCAAVILDPDDPIEGINDSKKLSEKRREAL 60

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +E+IT  A+   I   S Q ID+ NI  AT+D +  AV  L   P   LIDG   P DL 
Sbjct: 61  FEEITQRAVAYQIVFISPQEIDERNILWATMDGMSQAVAGLNPQPEYVLIDGNRCPPDLS 120

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             A AV+KGD+ S SIAAASI+AKV+RDR M+   +++P Y    H GYPT  H ++I +
Sbjct: 121 HPAKAVVKGDATSASIAAASILAKVSRDRYMKELDQQFPQYQLAKHKGYPTKLHYELIAQ 180

Query: 191 KGPSCIHRLTF 201
            G    +R +F
Sbjct: 181 YGIQPFYRRSF 191


>gi|117921242|ref|YP_870434.1| ribonuclease HII [Shewanella sp. ANA-3]
 gi|166226654|sp|A0KZ09|RNH2_SHESA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|117613574|gb|ABK49028.1| RNase HII [Shewanella sp. ANA-3]
          Length = 209

 Score =  233 bits (596), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 87/189 (46%), Positives = 113/189 (59%), Gaps = 5/189 (2%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S K+RE L+++I   A+   
Sbjct: 18  GLVAGVDEVGRGPLVGDVVTAAVILDPNRPIAGLNDSKKLSEKRREALFDEICEKALSYH 77

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP----EDLPCQAFAVIK 138
           +  AS   ID+ NI  AT+ A+  AV  L   P   L+DG   P    + L   + +++K
Sbjct: 78  VGRASPLEIDELNILHATMLAMQRAVAGLARAPELVLVDGNRSPAFTHQGLTLISHSIVK 137

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD +  SI+AASIIAKVTRDR M      YP YGF  H GYPT  H   I E G    +R
Sbjct: 138 GDGLIASISAASIIAKVTRDREMDALDAAYPQYGFAKHKGYPTKAHFDAIAEHGVFDQYR 197

Query: 199 LTFRPLRNL 207
            +F+P++ L
Sbjct: 198 KSFKPVKAL 206


>gi|330830741|ref|YP_004393693.1| ribonuclease HII [Aeromonas veronii B565]
 gi|328805877|gb|AEB51076.1| Ribonuclease HII [Aeromonas veronii B565]
          Length = 196

 Score =  233 bits (596), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 91/183 (49%), Positives = 121/183 (66%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP N   G+NDSKK+S KKR  L+++I   A+  +I
Sbjct: 10  LVAGVDEVGRGPLVGDVVTAAVILDPANPIAGLNDSKKLSEKKRLALFDEIKEKALAWAI 69

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             AS   ID+ NI  AT+ A+  AV  L+V P    IDG   P  LP +A AV+KGDS+ 
Sbjct: 70  GRASPAEIDELNILHATMLAMQRAVAGLKVTPELVFIDGNRCPA-LPMEARAVVKGDSLV 128

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AKVTRD  M     ++P+YGF  H GYPTA+H  ++ E+GP   +R +F+P
Sbjct: 129 AAISAASILAKVTRDGEMTELDSRHPEYGFARHKGYPTAEHLAILAERGPLPEYRKSFKP 188

Query: 204 LRN 206
           +R 
Sbjct: 189 VRR 191


>gi|120599538|ref|YP_964112.1| ribonuclease HII [Shewanella sp. W3-18-1]
 gi|146292465|ref|YP_001182889.1| ribonuclease HII [Shewanella putrefaciens CN-32]
 gi|166226653|sp|A4Y557|RNH2_SHEPC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166226655|sp|A1RLL3|RNH2_SHESW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|120559631|gb|ABM25558.1| RNase HII [Shewanella sp. W3-18-1]
 gi|145564155|gb|ABP75090.1| RNase HII [Shewanella putrefaciens CN-32]
          Length = 209

 Score =  233 bits (596), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 87/189 (46%), Positives = 114/189 (60%), Gaps = 5/189 (2%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S K+RE L+++I   A+   
Sbjct: 18  GLIAGVDEVGRGPLVGDVVTAAVILDPNQPISGLNDSKKLSEKRREALFDEICEKALCYH 77

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP----EDLPCQAFAVIK 138
           I  AS   ID+ NI  AT+ A+  AV  L + P+  L+DG   P          + ++IK
Sbjct: 78  IGRASPAEIDELNILHATMLAMQRAVAGLNLAPKLVLVDGNRSPFFSHNSQSIVSHSIIK 137

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD +  SI+AASIIAKVTRDR M      YP YGF  H GYPT  H + I E G    +R
Sbjct: 138 GDGLIASISAASIIAKVTRDREMDALDAAYPQYGFAKHKGYPTKAHFEAIAEHGVFDQYR 197

Query: 199 LTFRPLRNL 207
            +F+P++ L
Sbjct: 198 KSFKPVKAL 206


>gi|28198242|ref|NP_778556.1| ribonuclease HII [Xylella fastidiosa Temecula1]
 gi|182680879|ref|YP_001829039.1| ribonuclease HII [Xylella fastidiosa M23]
 gi|32129977|sp|Q87EI6|RNH2_XYLFT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238691079|sp|B2I7N7|RNH2_XYLF2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|28056312|gb|AAO28205.1| ribonuclease HII [Xylella fastidiosa Temecula1]
 gi|182630989|gb|ACB91765.1| Ribonuclease H [Xylella fastidiosa M23]
 gi|307579347|gb|ADN63316.1| ribonuclease HII [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 234

 Score =  233 bits (596), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 87/194 (44%), Positives = 117/194 (60%), Gaps = 2/194 (1%)

Query: 16  AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEK 74
             +   N   VAG+DE GRG LAGPVVVAA++ DP+     G+NDSK++S   RE LY  
Sbjct: 8   QHLLNSNTALVAGVDEAGRGPLAGPVVVAAVVFDPSQPHINGLNDSKQLSPACRERLYAH 67

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   A+   +       ID  NI++AT+  +  AVE +  + +SA IDG  +P++LPC A
Sbjct: 68  IVERALAYKVVMIDSTQIDTLNIYQATMLGMRLAVEGVAHVAKSARIDGNRLPKNLPCPA 127

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            A++ GD+   +I AASI+AKVTRDR M   H +YP YGFD H GY T  H   + E GP
Sbjct: 128 EALVGGDARDPTIMAASILAKVTRDRHMVELHLQYPHYGFDKHKGYGTPAHLAALAEHGP 187

Query: 194 SCIHRLTFRPLRNL 207
              HR +F P+R +
Sbjct: 188 CLEHRQSFAPVRRM 201


>gi|71899396|ref|ZP_00681555.1| Ribonuclease H [Xylella fastidiosa Ann-1]
 gi|71730805|gb|EAO32877.1| Ribonuclease H [Xylella fastidiosa Ann-1]
          Length = 234

 Score =  233 bits (596), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 87/194 (44%), Positives = 117/194 (60%), Gaps = 2/194 (1%)

Query: 16  AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEK 74
             +   N   VAG+DE GRG LAGPVVVAA++ DP+     G+NDSK++S   RE LY  
Sbjct: 8   QHLLNSNTALVAGVDEAGRGPLAGPVVVAAVVFDPSQPHINGLNDSKQLSPACRERLYAH 67

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   A+   +       ID  NI++AT+  +  AVE +  + +SA IDG  +P++LPC A
Sbjct: 68  IVERALAYKVVMIDSTQIDTLNIYQATMLGMRLAVEGVAHVAKSARIDGNRLPKNLPCPA 127

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            A++ GD+   +I AASI+AKVTRDR M   H +YP YGFD H GY T  H   + E GP
Sbjct: 128 EALVGGDTRDPTIMAASILAKVTRDRHMVELHLQYPHYGFDKHKGYGTPAHLAALAEHGP 187

Query: 194 SCIHRLTFRPLRNL 207
              HR +F P+R +
Sbjct: 188 CLEHRQSFAPVRRM 201


>gi|288818751|ref|YP_003433099.1| ribonuclease HII [Hydrogenobacter thermophilus TK-6]
 gi|288788151|dbj|BAI69898.1| ribonuclease HII [Hydrogenobacter thermophilus TK-6]
 gi|308752338|gb|ADO45821.1| Ribonuclease H [Hydrogenobacter thermophilus TK-6]
          Length = 198

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 87/194 (44%), Positives = 116/194 (59%), Gaps = 5/194 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E    EK +  VAG+DE GRG LAGPVV  A+IL P   PF   DSK++S ++REE Y
Sbjct: 3   EYELPFWEKGL-LVAGVDEAGRGPLAGPVVACALILPPFTEPFIDRDSKRMSAREREEAY 61

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E I S AI I  +      ID+ NIH+A   A+  A+E+L+      + D   + E   C
Sbjct: 62  ELIKSKAIAIGTAVVDSVVIDRINIHRAVKLAMKRALEDLKHPFDVVITDFVKL-EGYNC 120

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               ++KGD  SLS A AS++AKV RDR+M   HK +P Y F  H GYPT +H+++IK  
Sbjct: 121 --LPLVKGDEKSLSCACASVVAKVLRDRIMEHYHKVFPQYEFAQHKGYPTRRHRELIKTY 178

Query: 192 GPSCIHRLTFRPLR 205
           G + IHR +F+ LR
Sbjct: 179 GFTEIHRRSFKTLR 192


>gi|72162544|ref|YP_290201.1| ribonuclease HII [Thermobifida fusca YX]
 gi|97189430|sp|Q47MZ1|RNH2_THEFY RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|71916276|gb|AAZ56178.1| ribonuclease H [Thermobifida fusca YX]
          Length = 231

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 72/199 (36%), Positives = 112/199 (56%), Gaps = 1/199 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P +++E  +       VAG+DEVGRGA AGPV+V A I D +  P G+ DSK+++ ++R 
Sbjct: 11  PTYDVEQELIAAGARVVAGLDEVGRGAWAGPVLVCAAITDGSPPPEGLTDSKRLTPRRRT 70

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            + E++ S     +   AS   ID+  + +A   A + A++ L V P + ++DG+     
Sbjct: 71  AMAEQVRSWVRGYAFGQASPAEIDRLGMTEALRLAAHRALDALPVRPDAVIVDGKHDYVG 130

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
            P      +K D   +S+AAAS++AKV RD LM     +YP YGF +  GYP+  H+  +
Sbjct: 131 APWTVRTHVKADLTCVSVAAASVLAKVHRDALMAELDAEYPGYGFATGAGYPSPVHRAAL 190

Query: 189 KEKGPSCIHRLTFRPLRNL 207
            E GP+  HRL++  L  L
Sbjct: 191 AEHGPTPHHRLSWSYLDRL 209


>gi|330752803|emb|CBL88322.1| ribonuclease HII [uncultured Dokdonia sp.]
          Length = 212

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 72/186 (38%), Positives = 101/186 (54%), Gaps = 8/186 (4%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
            G DE GRG LAGPV  AA++L  + I   + DSK+++ KKR+ L   I   AI  S S 
Sbjct: 13  CGTDEAGRGCLAGPVTAAAVMLPDSFINEILTDSKQLTEKKRDLLKPIIEQQAIAYSFSH 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENL-------QVIPRSALIDGRSIPEDLPCQAFAVIK 138
              + ID  NI  A++ A++ ++E +       Q  P+  L+DG             VIK
Sbjct: 73  VMMEEIDDINILNASITAMHRSIEGMIGTLSRKQKKPQHILVDGNRFKPFTGIDHTTVIK 132

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD   L IAAASIIAK  RD  M   H++YP Y +  + GYPT +H++ I+  G +  HR
Sbjct: 133 GDGKYLPIAAASIIAKTERDLFMDRIHEEYPMYNWKKNKGYPTKEHREAIRTYGITKYHR 192

Query: 199 LTFRPL 204
            +F+ L
Sbjct: 193 KSFKLL 198


>gi|58578839|ref|YP_197051.1| ribonuclease HII [Ehrlichia ruminantium str. Welgevonden]
 gi|58616897|ref|YP_196096.1| ribonuclease HII [Ehrlichia ruminantium str. Gardel]
 gi|75356600|sp|Q5FFD4|RNH2_EHRRG RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|58416509|emb|CAI27622.1| Ribonuclease HII [Ehrlichia ruminantium str. Gardel]
 gi|58417465|emb|CAI26669.1| Ribonuclease HII [Ehrlichia ruminantium str. Welgevonden]
          Length = 220

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 86/207 (41%), Positives = 118/207 (57%), Gaps = 8/207 (3%)

Query: 9   RPHFELEAM---VREKNMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKI 63
            P F +E     ++      + G+DEVG G+LAGPVV AA+      N     INDSKK+
Sbjct: 9   MPDFSIENEILKLKNNKECIIVGVDEVGYGSLAGPVVSAAVFFPNYNNETTQDINDSKKL 68

Query: 64  SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ--VIPRSALID 121
           + K R+++Y KI +    SI  A    ID++NI  AT  A+  A+  L   +     +ID
Sbjct: 69  TPKTRQKIYNKIITRVKWSIGFAHIFEIDEYNILNATHIAMKRALTGLNAHIDIDYVIID 128

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           G  IP ++P  A A+I GD+IS SIAAASIIAKVTRDRLM   H +YP Y ++ + GY T
Sbjct: 129 GNKIP-NIPWNAQAIIGGDTISTSIAAASIIAKVTRDRLMETLHIQYPQYNWNKNKGYGT 187

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNLS 208
             H   + + G +  HR TF P+  +S
Sbjct: 188 KDHITSLYKYGKTIHHRNTFTPISKIS 214


>gi|217974046|ref|YP_002358797.1| ribonuclease HII [Shewanella baltica OS223]
 gi|254807987|sp|B8E7Q2|RNH2_SHEB2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|217499181|gb|ACK47374.1| Ribonuclease H [Shewanella baltica OS223]
          Length = 210

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 88/199 (44%), Positives = 118/199 (59%), Gaps = 6/199 (3%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           EA +   +   +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S K+RE L+++
Sbjct: 9   EADLLSFSTGLIAGVDEVGRGPLVGDVVTAAVILDPNKPISGLNDSKKLSEKRREALFDE 68

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-----ED 128
           I   A+   +  AS   ID+ NI  AT+ A+  AV  L + P   L+DG   P       
Sbjct: 69  ICDKALCYQVGRASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRSPIFVAHNG 128

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
               + ++IKGD +  SI+AASIIAKVTRDR M +    YP YGF  H GYPT  H + I
Sbjct: 129 AGLTSHSIIKGDGLIASISAASIIAKVTRDREMDVLDAAYPQYGFAKHRGYPTKAHFEAI 188

Query: 189 KEKGPSCIHRLTFRPLRNL 207
            E G    +R +F+P++ L
Sbjct: 189 AEHGVFDQYRKSFKPVKAL 207


>gi|67920299|ref|ZP_00513819.1| Ribonuclease H [Crocosphaera watsonii WH 8501]
 gi|67857783|gb|EAM53022.1| Ribonuclease H [Crocosphaera watsonii WH 8501]
          Length = 196

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 77/194 (39%), Positives = 111/194 (57%), Gaps = 5/194 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKRE 69
           + A +   +   +AG+DEVGRG L GPVV AA++ +   I      G+ DSK++S K+RE
Sbjct: 1   MSAQLFSDSQILIAGVDEVGRGCLFGPVVAAAVVFEKAAISQLPEIGVKDSKQLSAKRRE 60

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            L  +I + AI   IS AS + ID+ NI  A+L A+  +V  L V P   L+DG     +
Sbjct: 61  ILATEIKNRAISYYISYASAREIDRLNILNASLLAMQRSVTKLSVTPELCLVDGNKKIPN 120

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           +      +I GD  S  IAAASI+AKV RD+L+     KYP Y  +++ GY T KH+  +
Sbjct: 121 ITIPQETIIGGDRTSPIIAAASILAKVWRDKLIIRLATKYPHYDLENNKGYGTKKHRLAL 180

Query: 189 KEKGPSCIHRLTFR 202
           +E  P   HR +F+
Sbjct: 181 QEYAPCFHHRHSFK 194


>gi|315282093|ref|ZP_07870581.1| ribonuclease HII [Listeria marthii FSL S4-120]
 gi|313614263|gb|EFR87919.1| ribonuclease HII [Listeria marthii FSL S4-120]
          Length = 262

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 87/195 (44%), Positives = 122/195 (62%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + EA + ++    +AG+DEVGRG LAGPVV AA+IL  +    GINDSK++S  KR+ L+
Sbjct: 60  QYEADLFQQGYQYIAGVDEVGRGPLAGPVVAAAVILPADFSIVGINDSKQLSEAKRDALF 119

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E I + AI I +    H  ID+ NI++AT  A+  +++ L   P   LID    P     
Sbjct: 120 ETIKAEAIAIGVGIIEHDVIDQVNIYEATKLAMRESLDQLVPKPDFVLIDAM--PLKYME 177

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASIIAKVTRDRLM++  +KYP Y F +++GY T  H   +   
Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGTKNHLTGLDSI 237

Query: 192 GPSCIHRLTFRPLRN 206
           G   IHRL+F P++ 
Sbjct: 238 GICPIHRLSFSPVKE 252


>gi|225621120|ref|YP_002722378.1| ribonuclease HII [Brachyspira hyodysenteriae WA1]
 gi|225215940|gb|ACN84674.1| ribonuclease HII [Brachyspira hyodysenteriae WA1]
          Length = 226

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 88/217 (40%), Positives = 120/217 (55%), Gaps = 15/217 (6%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII----------LDP 50
           MF ++  ++  F  E          + GIDEVGRG L GPV VAA+I          L  
Sbjct: 3   MFLDNKADK--FVYEKEYLSLGYKYICGIDEVGRGCLFGPVTVAAVIMPLELYNENELKK 60

Query: 51  NNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVE 109
            NI   I+DSKKIS KKREELY+KI   A+  SI S   + ID+ NI+ A   A+ +AV 
Sbjct: 61  ENIVEEIDDSKKISAKKREELYDKIIDKALCYSIYSVDSKTIDEINIYNAVKLAMVNAVN 120

Query: 110 NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
           NL + P   LID   +  D+  +  ++ KGD+ S SI  ASI+AKV RDR+M      Y 
Sbjct: 121 NLNIKPDILLIDAVKL--DINIKQCSITKGDAKSYSIGCASIVAKVYRDRMMNELPDFYQ 178

Query: 170 DYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
            Y    + GY T +H + I+  GPS +HR +F P+++
Sbjct: 179 KYKVSKNKGYGTKEHMKTIEMYGPSDMHRYSFEPIKS 215


>gi|238926779|ref|ZP_04658539.1| ribonuclease HII [Selenomonas flueggei ATCC 43531]
 gi|238885311|gb|EEQ48949.1| ribonuclease HII [Selenomonas flueggei ATCC 43531]
          Length = 259

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 92/199 (46%), Positives = 123/199 (61%), Gaps = 2/199 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +  E    E+    VAGIDE GRG LAGPV VAA+IL    +   +NDSKK+S K REEL
Sbjct: 52  YSYERCAAERGNCIVAGIDEAGRGPLAGPVAVAAVILPQEYLLLRLNDSKKLSEKVREEL 111

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           YE I S A+   +     + ID+ NI +AT   +Y AV  L   P+  LID  ++P  L 
Sbjct: 112 YETIVSDAVSYHVELIDAETIDRMNILEATRRGMYDAVAALLPTPQEVLIDAVALPR-LR 170

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             + +++KGD+ S SIAAASI+AKVTRDRLM    K+YP YGF  H GY T +H + I++
Sbjct: 171 MASQSIVKGDAKSASIAAASILAKVTRDRLMLTYDKEYPVYGFAQHKGYGTREHIEAIRK 230

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            G   +HR TF P+R++ +
Sbjct: 231 YGICPLHRKTFEPIRSMII 249


>gi|282850261|ref|ZP_06259640.1| ribonuclease HII [Veillonella parvula ATCC 17745]
 gi|282579754|gb|EFB85158.1| ribonuclease HII [Veillonella parvula ATCC 17745]
          Length = 265

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 87/197 (44%), Positives = 131/197 (66%), Gaps = 2/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           ++ E M  ++ ++ VAG+DEVGRG +AGPV VAA+IL P  +  G+NDSKK++ +KRE L
Sbjct: 63  YDYEGMFYDQGIYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREAL 122

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I   A+ +S  S   + ID+ NI++AT  A+Y A+  L V   + + D   +P DL 
Sbjct: 123 YDIIMDEAVAVSCISYGPEKIDELNIYEATRQAMYEAIRTLSVPAEAVVADAMKLP-DLR 181

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGDS S +IAAASIIAKVTRDR M+    ++P YGF  H GY T  H++ I++
Sbjct: 182 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDDEFPGYGFGIHKGYYTELHKEAIEQ 241

Query: 191 KGPSCIHRLTFRPLRNL 207
           +G + +HR +F P++++
Sbjct: 242 QGVTPLHRKSFEPIKSI 258


>gi|320354477|ref|YP_004195816.1| RNase HII [Desulfobulbus propionicus DSM 2032]
 gi|320122979|gb|ADW18525.1| RNase HII [Desulfobulbus propionicus DSM 2032]
          Length = 224

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 88/213 (41%), Positives = 126/213 (59%), Gaps = 10/213 (4%)

Query: 1   MFCNSIPERPH---FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI 57
           +F + +P  PH   F  E  ++ +    VAG+DE GRG LAGPVV A +IL  +      
Sbjct: 6   LFADLLPFSPHTDTFYFERQLQRQGFARVAGVDEAGRGPLAGPVVAACVILPADGDFTPY 65

Query: 58  NDSKKISHKKREELYEKI-TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP- 115
            DSK ++ ++RE L+E + T+ A I +  AS + I++ NI +A+L A+  A+E    +P 
Sbjct: 66  VDSKTLTRRQRERLFELLSTNGARIGVGEASPREIEQVNILQASLLAMKRAMEACGQVPP 125

Query: 116 ----RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171
                  L+DG      +P     ++KG+S S SIAAASI+AKVTRDR+M  AH  +P Y
Sbjct: 126 GGVPDFLLVDG-RFEVPVPVGQRTLVKGESKSASIAAASIVAKVTRDRMMADAHALFPQY 184

Query: 172 GFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           GFD H GYPT  H++ I+  GP  +HR TFR +
Sbjct: 185 GFDRHQGYPTKAHREAIRNHGPCPLHRRTFRGV 217


>gi|332292284|ref|YP_004430893.1| Ribonuclease H [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170370|gb|AEE19625.1| Ribonuclease H [Krokinobacter diaphorus 4H-3-7-5]
          Length = 212

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 70/186 (37%), Positives = 100/186 (53%), Gaps = 8/186 (4%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
            G DE GRG LAGPV  AA++L  + I   + DSK ++ KKRE L   I   AI I  + 
Sbjct: 13  CGTDEAGRGCLAGPVTAAAVMLPDDFINEILTDSKLLTEKKRELLKPIIEEQAIAIGFAH 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENL-------QVIPRSALIDGRSIPEDLPCQAFAVIK 138
                ID  NI  A++  ++ ++E++       Q  P+  L+DG             VIK
Sbjct: 73  VMMSEIDDINILNASILGMHRSIESMIGTLSRKQKKPQHILVDGNRFKPFPKIDHTTVIK 132

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD   L IAAASIIAK  RD  M + H+++P Y +  + GYPT +H++ I+  G +  HR
Sbjct: 133 GDGKYLPIAAASIIAKTARDEYMNLIHEEFPMYNWKKNKGYPTKEHREAIRRYGITKYHR 192

Query: 199 LTFRPL 204
            +F+ L
Sbjct: 193 KSFKLL 198


>gi|262038337|ref|ZP_06011718.1| ribonuclease HII [Leptotrichia goodfellowii F0264]
 gi|261747641|gb|EEY35099.1| ribonuclease HII [Leptotrichia goodfellowii F0264]
          Length = 205

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 81/180 (45%), Positives = 110/180 (61%), Gaps = 3/180 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAIISI 83
            + G+DE GRG LAGPVV AA+I+         INDSKK+S KKRE+L+E I    I+  
Sbjct: 14  IIVGVDEAGRGPLAGPVVAAAVIIIQYFKELDEINDSKKLSEKKREQLFELIKEKCIVGT 73

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS--ALIDGRSIPEDLPCQAFAVIKGDS 141
             A  + ID+ NI  AT  A+  A+  ++        L+DG         +  AVIKGDS
Sbjct: 74  GIADEKEIDEINILNATFSAMRKAINEVKEKSDFDIVLVDGNHKIRKYEGEQEAVIKGDS 133

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            SLSIAAASI+AKVTRD++M+   +++P+Y FD H GY T  H++++ +KGP   HR TF
Sbjct: 134 KSLSIAAASIVAKVTRDKMMKEMSEEFPEYRFDKHKGYATKLHREILLKKGPCKYHRKTF 193


>gi|57238907|ref|YP_180043.1| ribonuclease HII [Ehrlichia ruminantium str. Welgevonden]
 gi|81637940|sp|Q5HC01|RNH2_EHRRW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|57160986|emb|CAH57892.1| ribonuclease HII [Ehrlichia ruminantium str. Welgevonden]
          Length = 212

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 86/207 (41%), Positives = 118/207 (57%), Gaps = 8/207 (3%)

Query: 9   RPHFELEAM---VREKNMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKI 63
            P F +E     ++      + G+DEVG G+LAGPVV AA+      N     INDSKK+
Sbjct: 1   MPDFSIENEILKLKNNKECIIVGVDEVGYGSLAGPVVSAAVFFPNYNNETTQDINDSKKL 60

Query: 64  SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ--VIPRSALID 121
           + K R+++Y KI +    SI  A    ID++NI  AT  A+  A+  L   +     +ID
Sbjct: 61  TPKTRQKIYNKIITRVKWSIGFAHIFEIDEYNILNATHIAMKRALTGLNAHIDIDYVIID 120

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           G  IP ++P  A A+I GD+IS SIAAASIIAKVTRDRLM   H +YP Y ++ + GY T
Sbjct: 121 GNKIP-NIPWNAQAIIGGDTISTSIAAASIIAKVTRDRLMETLHIQYPQYNWNKNKGYGT 179

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNLS 208
             H   + + G +  HR TF P+  +S
Sbjct: 180 KDHITSLYKYGKTIHHRNTFTPISKIS 206


>gi|51473401|ref|YP_067158.1| ribonuclease HII [Rickettsia typhi str. Wilmington]
 gi|73917831|sp|Q68XG6|RNH2_RICTY RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|51459713|gb|AAU03676.1| Endoribonuclease H [Rickettsia typhi str. Wilmington]
          Length = 193

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 86/191 (45%), Positives = 115/191 (60%), Gaps = 5/191 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            + E        + VAG+DE GRG+L GPVV +A+I+D  +I  GI DSKK+S  KR+ L
Sbjct: 6   LQYEQKYHN---YIVAGVDEAGRGSLVGPVVASAVIIDKVDIISGIKDSKKLSKNKRDIL 62

Query: 72  YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           YE+ITS+ + S +   H  ID  NI +AT  A   AV NL + P   L+DG     D   
Sbjct: 63  YEQITSNYVWSTAIIEHTEIDDINILEATKKACTIAVANLSLKPEKILVDGNMKFSD--V 120

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +  ++I GD++SLSIAAASIIAKVTRDRLM     +YP Y +  + GY T +H + I   
Sbjct: 121 RFISIINGDNLSLSIAAASIIAKVTRDRLMLELSAEYPQYLWHKNYGYGTREHIEAINTH 180

Query: 192 GPSCIHRLTFR 202
           G S  HR +F+
Sbjct: 181 GLSSYHRKSFK 191


>gi|299822635|ref|ZP_07054521.1| ribonuclease H [Listeria grayi DSM 20601]
 gi|299816164|gb|EFI83402.1| ribonuclease H [Listeria grayi DSM 20601]
          Length = 259

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 90/194 (46%), Positives = 123/194 (63%), Gaps = 3/194 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E+   +     +AG+DEVGRG LAGPVV AA+IL  +    GINDSK++S +KR+  Y
Sbjct: 61  QFESEYLKAGYSRIAGVDEVGRGPLAGPVVAAAVILPNDFSVTGINDSKQLSEEKRQYYY 120

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           + I   A+ I IS  SH+ ID+ NI++AT  A+  A++NL   P   LID   +      
Sbjct: 121 DIIREQAVSIGISIQSHEVIDQVNIYEATKLAMAEALDNLDPAPDFTLIDAMKL--GYSK 178

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           Q  A+IKGD+ S+SIAAASIIAKVTRD LM+ A + YP Y F  ++GY T  H   + ++
Sbjct: 179 QELAIIKGDTKSISIAAASIIAKVTRDSLMKEAEQLYPGYDFAHNMGYGTKLHLAGLDQQ 238

Query: 192 GPSCIHRLTFRPLR 205
           G   IHRLTF P++
Sbjct: 239 GVCPIHRLTFAPVK 252


>gi|189043616|sp|A0KHH7|RNH2_AERHH RecName: Full=Ribonuclease HII; Short=RNase HII
          Length = 196

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 89/184 (48%), Positives = 119/184 (64%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG L G VV AA+ILDP N   G+NDSKK+S KKR  L+++I   A+  S
Sbjct: 9   RLVAGVDEVGRGPLVGDVVTAAVILDPANPIIGLNDSKKLSEKKRLALFDEIKEKALAWS 68

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  AS   ID+ NI  AT+ A+  AV  L + P    IDG   P  L  +A AV+KGDS+
Sbjct: 69  VGRASPAEIDELNILHATMLAMQRAVAGLSIAPELVFIDGNRCP-SLSMEARAVVKGDSL 127

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +I+AASI+AKVTRD  M     ++P+YGF  H GYPTA+H  ++ E+GP   +R +F+
Sbjct: 128 VAAISAASILAKVTRDAEMTELDSRHPEYGFARHKGYPTAEHLAILAERGPLPEYRKSFK 187

Query: 203 PLRN 206
           P+R 
Sbjct: 188 PVRR 191


>gi|298490081|ref|YP_003720258.1| ribonuclease H ['Nostoc azollae' 0708]
 gi|298231999|gb|ADI63135.1| Ribonuclease H ['Nostoc azollae' 0708]
          Length = 221

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 83/205 (40%), Positives = 120/205 (58%), Gaps = 7/205 (3%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSK 61
           +PE   +EL        +  VAG+DEVGRGAL GPVV AA++L  + +P      I DSK
Sbjct: 17  LPESSWWELSTCANIHGL--VAGVDEVGRGALFGPVVAAAVMLSADALPKLMAAKIKDSK 74

Query: 62  KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K+S  +R +L ++I    +   I  A+   ID+ NI +ATL A+  AV  L+V P   L+
Sbjct: 75  KLSASRRTQLAQQINGLVLDWKIGYATTAEIDQFNILQATLLAMKRAVLKLKVPPALCLV 134

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG  + +DL      +IKGD  SL+IA+ASI+AKV RD L+     KYP Y  + + GY 
Sbjct: 135 DGNQLVKDLLIPQETMIKGDERSLNIASASIMAKVWRDDLLLRLASKYPMYELERNKGYG 194

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLR 205
           + +H   +++ G S +HR +FRP +
Sbjct: 195 SQRHLLALRKYGASPLHRRSFRPCQ 219


>gi|86134237|ref|ZP_01052819.1| Ribonuclease HII [Polaribacter sp. MED152]
 gi|85821100|gb|EAQ42247.1| Ribonuclease HII [Polaribacter sp. MED152]
          Length = 199

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 68/184 (36%), Positives = 105/184 (57%), Gaps = 1/184 (0%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81
                AG DE GRG L+GPVV AA+IL  N     +NDSK++S K R+ L   I  +AI 
Sbjct: 8   GCLLEAGTDEAGRGCLSGPVVAAAVILPKNFSHPLLNDSKQLSEKNRQILKPIIEENAIA 67

Query: 82  -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            ++S    + +DK N+ +A++  ++ A+E L V P   ++DG             ++KGD
Sbjct: 68  HAVSFVYQEEVDKINVLQASITGMHRAIEALDVTPEFIIVDGNKFRNYKEIPHETIVKGD 127

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           +  LSIAAAS++AK  RD  M   H+++  Y +  + GYPT +H+  I++ G +  HR +
Sbjct: 128 AKFLSIAAASVLAKTYRDDYMEKIHQEFSMYNWQKNKGYPTKEHRDAIRKFGATIHHRKS 187

Query: 201 FRPL 204
           F+ L
Sbjct: 188 FKLL 191


>gi|319425767|gb|ADV53841.1| Ribonuclease H [Shewanella putrefaciens 200]
          Length = 209

 Score =  233 bits (594), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 87/189 (46%), Positives = 114/189 (60%), Gaps = 5/189 (2%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             +AG+DEVGRG L G VV AA+ILDPN    G+NDSKK+S K+RE L+++I   A+   
Sbjct: 18  GLIAGVDEVGRGPLVGDVVTAAVILDPNQSISGLNDSKKLSEKRREALFDEICEKALCYH 77

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP----EDLPCQAFAVIK 138
           I  AS   ID+ NI  AT+ A+  AV  L + P+  L+DG   P          + ++IK
Sbjct: 78  IGRASPAEIDELNILHATMLAMQRAVAGLNLAPKLVLVDGNRSPVFSHNSQSIVSHSIIK 137

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD +  SI+AASIIAKVTRDR M      YP YGF  H GYPT  H + I E G    +R
Sbjct: 138 GDGLIASISAASIIAKVTRDREMDALDAVYPQYGFAKHKGYPTKAHFEAIAEHGVFDQYR 197

Query: 199 LTFRPLRNL 207
            +F+P++ L
Sbjct: 198 KSFKPVKAL 206


>gi|108762969|ref|YP_630793.1| ribonuclease HII [Myxococcus xanthus DK 1622]
 gi|123247896|sp|Q1D980|RNH2_MYXXD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|108466849|gb|ABF92034.1| ribonuclease HII [Myxococcus xanthus DK 1622]
          Length = 293

 Score =  233 bits (594), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 90/200 (45%), Positives = 118/200 (59%), Gaps = 3/200 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI-SHKK 67
           R     E  + E+    +AG+DE G   LAGPVV AA +L       G++DSKKI   +K
Sbjct: 66  RKLLRFETELWEQGHTHIAGVDEAGMAPLAGPVVAAAAVLPKGFRLKGLDDSKKILDAEK 125

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           RE L E I   A+  ++  A  + ID+ NI+ A L A+  AVE L V P   L+D R++P
Sbjct: 126 RESLAEAIKRDAVAWAVGRAEVEEIDRINIYHAGLLAMRRAVEGLSVKPDHLLVDARTVP 185

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           E        +IKGD++SLSIAAASI+AK TRDR M     +YP YG  +H GYPT  H Q
Sbjct: 186 EC-SVPQKGIIKGDALSLSIAAASILAKTTRDRWMAELDDQYPGYGLAAHKGYPTPHHLQ 244

Query: 187 VIKEKGPSCIHRLTFRPLRN 206
           V++EKG   IHR +F P+R 
Sbjct: 245 VLREKGVLPIHRRSFAPVRE 264


>gi|156742530|ref|YP_001432659.1| ribonuclease HII [Roseiflexus castenholzii DSM 13941]
 gi|189043650|sp|A7NM86|RNH2_ROSCS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|156233858|gb|ABU58641.1| Ribonuclease H [Roseiflexus castenholzii DSM 13941]
          Length = 224

 Score =  233 bits (594), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 84/205 (40%), Positives = 114/205 (55%), Gaps = 7/205 (3%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN-----NIPFGINDSKKIS 64
           P  E E  +       +AGIDE GRG  AGPVV AA+IL         +  G+ DSK ++
Sbjct: 7   PTVEEERALCAVGYRAIAGIDEAGRGCWAGPVVAAAVILPERVIAKPELLDGVADSKMLT 66

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
             +R  L+E+ITS A+  ++ S     ID H I  AT  A+  A+  L +     LID  
Sbjct: 67  PAQRVALFERITSLAVAWAVGSVPAHVIDSHGILPATRLAMQVALLRLPLPADVLLIDAV 126

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            + +  P     ++KGD   LSIAAASIIAKV RDR M    + +  YGF +H GY TA 
Sbjct: 127 RL-DGWPLPQRVLVKGDVRCLSIAAASIIAKVMRDRFMEGLGRYWTRYGFAAHKGYGTAA 185

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLS 208
           HQ+ ++  GP+  HRLTFRPL +++
Sbjct: 186 HQEALRRYGPTPHHRLTFRPLCDMA 210


>gi|86132077|ref|ZP_01050673.1| Ribonuclease HII [Dokdonia donghaensis MED134]
 gi|85817411|gb|EAQ38591.1| Ribonuclease HII [Dokdonia donghaensis MED134]
          Length = 212

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 72/186 (38%), Positives = 101/186 (54%), Gaps = 8/186 (4%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
            G DE GRG LAGPV  AA++L  + I   + DSK+++ KKR+ L   I   AI  S S 
Sbjct: 13  CGTDEAGRGCLAGPVTAAAVMLPDSFINEILTDSKQLTEKKRDLLKPIIEQQAIAYSFSH 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENL-------QVIPRSALIDGRSIPEDLPCQAFAVIK 138
              + ID  NI  A++ A++ ++E +       Q  P+  L+DG             VIK
Sbjct: 73  VMMEEIDDINILNASITAMHRSIEGMISTLSRKQKKPQHILVDGNRFKPFTGLDHTTVIK 132

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD   L IAAASIIAK  RD  M   H++YP Y +  + GYPT +H++ I+  G +  HR
Sbjct: 133 GDGKYLPIAAASIIAKTERDLFMDRIHEEYPMYNWKKNKGYPTKEHREAIRTYGITKYHR 192

Query: 199 LTFRPL 204
            +F+ L
Sbjct: 193 KSFKLL 198


>gi|145300047|ref|YP_001142888.1| ribonuclease HII [Aeromonas salmonicida subsp. salmonicida A449]
 gi|166225165|sp|A4SQG8|RNH2_AERS4 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|142852819|gb|ABO91140.1| ribonuclease HII [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 196

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 88/182 (48%), Positives = 119/182 (65%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP N   G+ DSKK+S KKR  L+++I   A+  +I
Sbjct: 10  LVAGVDEVGRGPLVGDVVTAAVILDPANPITGLADSKKLSEKKRLALFDEIKQKALAWAI 69

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             AS + ID+ NI  AT+ A+  AV  L + P    IDG   P  LP +A AV+KGDS+ 
Sbjct: 70  GRASPEEIDELNILHATMLAMQRAVAGLSITPELVFIDGNRCP-SLPMEARAVVKGDSLV 128

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AKVTRD  M     ++P+YGF  H GYPT +H  ++ E+GP   +R +F+P
Sbjct: 129 AAISAASILAKVTRDAEMTELDSRHPEYGFARHKGYPTPEHLAILAERGPLPAYRKSFKP 188

Query: 204 LR 205
           +R
Sbjct: 189 VR 190


>gi|295132562|ref|YP_003583238.1| ribonuclease HII [Zunongwangia profunda SM-A87]
 gi|294980577|gb|ADF51042.1| ribonuclease HII [Zunongwangia profunda SM-A87]
          Length = 199

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 65/177 (36%), Positives = 100/177 (56%), Gaps = 1/177 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT-SSAIISISS 85
            G DE GRG +AGPV  AA+IL  +     + DSKK++H+KR  L + I    A   I+ 
Sbjct: 13  CGTDEAGRGCIAGPVTAAAVILPKHFENEFLRDSKKLTHQKRLLLKKIIENDCASYGITH 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
              + ID+ NI  +++ A++ ++E L   P   ++DG             ++KGD   LS
Sbjct: 73  IFMETIDEINILNSSILAMHKSIEKLSPEPEHIIVDGNRFKPFKNIAYECIVKGDDKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           IAAASI+AK  RD  M   H++YP Y +  + GYPT +H++ I++ G +  HR +F+
Sbjct: 133 IAAASILAKTYRDEYMESIHEEYPMYNWKKNKGYPTKEHREAIRKYGITKYHRKSFK 189


>gi|303231457|ref|ZP_07318188.1| ribonuclease HII [Veillonella atypica ACS-049-V-Sch6]
 gi|302513894|gb|EFL55905.1| ribonuclease HII [Veillonella atypica ACS-049-V-Sch6]
          Length = 266

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 87/197 (44%), Positives = 132/197 (67%), Gaps = 2/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           ++ E M  ++ ++ VAG+DEVGRG +AGPV VAA+IL P  +  G+NDSKK++ +KRE L
Sbjct: 63  YDYEGMFYDEGLYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREVL 122

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I   A+ +S  S   + ID+ NI++AT  A+Y A+  L V   + + D   +P DL 
Sbjct: 123 YDIIMEEAVAVSCISYGPEKIDELNIYEATRQAMYEAIRTLDVPAEAVVADAMKLP-DLT 181

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGDS S +IAAASIIAKVTRDR M+   ++YP YGF  H GY T  H++ +++
Sbjct: 182 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDEEYPGYGFGIHKGYYTELHKEAVEQ 241

Query: 191 KGPSCIHRLTFRPLRNL 207
           +G + +HR +F P++++
Sbjct: 242 QGVTPLHRKSFEPIKSI 258


>gi|313665432|ref|YP_004047303.1| ribonuclease HII [Mycoplasma leachii PG50]
 gi|312949606|gb|ADR24202.1| ribonuclease HII [Mycoplasma leachii PG50]
          Length = 207

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 74/189 (39%), Positives = 113/189 (59%), Gaps = 1/189 (0%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
            N+  ++G DE GRG LAG +VVA++IL  +     I DSKK++ K R+ LY++I  + +
Sbjct: 15  HNITYLSGSDEAGRGCLAGSLVVASVILKLDYFNPLIKDSKKLNPKTRQVLYDEIIKNCL 74

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
              I   S + +D+ N  +A+L      + NL++ P  ALIDG    E    +   +IKG
Sbjct: 75  DYQIIIISSKQVDEFNPLQASLLGFKTTINNLKITPDLALIDGNQNIELTNIKTLPIIKG 134

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D  S SIA +SI+AKVTRD+++    + YP+Y F SH GY T KH   I++ G   IHR 
Sbjct: 135 DDKSFSIACSSILAKVTRDKILDEYDQIYPNYDFKSHKGYCTKKHLLAIQKYGILDIHRK 194

Query: 200 TFRPLRNLS 208
           +++P++ +S
Sbjct: 195 SYKPIKKIS 203


>gi|153812956|ref|ZP_01965624.1| hypothetical protein RUMOBE_03363 [Ruminococcus obeum ATCC 29174]
 gi|149830903|gb|EDM85993.1| hypothetical protein RUMOBE_03363 [Ruminococcus obeum ATCC 29174]
          Length = 251

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 88/199 (44%), Positives = 126/199 (63%), Gaps = 6/199 (3%)

Query: 8   ERPHFELEAMV----REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           E+    +E M+    + +++  + GIDEVGRG LAGPVV  A+IL  ++    +NDSKK+
Sbjct: 49  EKEKLRMEQMMQFEHKYEHLGYLCGIDEVGRGPLAGPVVACAVILPKDHPILYLNDSKKL 108

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           +  KREELY+ I   A+ + +  AS   ID+ NI +AT +A+  AV  L V+P+  L D 
Sbjct: 109 TAHKREELYDVIMREAVAVGLGMASPARIDEINILQATYEAMRQAVSKLAVMPQLLLNDA 168

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
            +IP  +      +IKGD+ S SIAAASI+AKVTRDRLM    K  P+YGF S+ GY +A
Sbjct: 169 VTIP-GIEIPQVPIIKGDAKSASIAAASIVAKVTRDRLMVEYDKTMPEYGFASNKGYGSA 227

Query: 183 KHQQVIKEKGPSCIHRLTF 201
           +H   +++ GP+ IHR +F
Sbjct: 228 EHIAALQKYGPTPIHRASF 246


>gi|167563174|ref|ZP_02356090.1| ribonuclease HII [Burkholderia oklahomensis EO147]
 gi|167570357|ref|ZP_02363231.1| ribonuclease HII [Burkholderia oklahomensis C6786]
          Length = 214

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 84/182 (46%), Positives = 120/182 (65%), Gaps = 2/182 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            V G+DE GRG LAGPVV AA++LDP     G++DSK +S KKRE L+++I + ++   +
Sbjct: 27  IVCGVDEAGRGPLAGPVVAAAVVLDPARPIEGLDDSKALSAKKRERLFDEIVAHSLAYCV 86

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS + ID  NI  AT+ A+  AVE L + P  A IDG   P  L  ++ A++ GD++ 
Sbjct: 87  ASASVEEIDTLNILHATMLAMKRAVEGLAMRPTLAKIDGNRCPT-LSIRSVAIVGGDALV 145

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SI+AASI+AKVTRDR++   H+ +P YGF+ H GY T +H   ++E GP   HR +F P
Sbjct: 146 PSISAASILAKVTRDRMLVDLHQLFPMYGFNVHAGYGTPRHLAALREHGPCEHHRRSFAP 205

Query: 204 LR 205
           +R
Sbjct: 206 VR 207


>gi|134299893|ref|YP_001113389.1| ribonuclease HII [Desulfotomaculum reducens MI-1]
 gi|189043592|sp|A4J661|RNH2_DESRM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|134052593|gb|ABO50564.1| Ribonuclease H [Desulfotomaculum reducens MI-1]
          Length = 198

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 81/184 (44%), Positives = 117/184 (63%), Gaps = 2/184 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
            G+DE GRG+    +  +A ILDP +   G+ DSKK+S +KRE L E+I   A+   I+ 
Sbjct: 5   CGVDETGRGSCISGIYASACILDPAHPIEGLRDSKKLSARKREILAEEIKQYALSWCIAQ 64

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           AS + +++ N+H ATL A+  A+E L +      +DG  +PE +   A A++KGD +  +
Sbjct: 65  ASLEEVEQLNVHHATLLAMKRAIEGLSIRANKVYVDGIHLPE-VDIPAEAIVKGDDLIPA 123

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AKV RD  M   H+KYP YGF+SH GY T  H++ +K+ GPS IHR T+ P+R
Sbjct: 124 ISAASILAKVARDGAMLEYHEKYPQYGFNSHKGYLTKAHREALKKYGPSPIHRKTYAPIR 183

Query: 206 NLSV 209
            L V
Sbjct: 184 ELLV 187


>gi|88607606|ref|YP_505581.1| ribonuclease HII [Anaplasma phagocytophilum HZ]
 gi|123494580|sp|Q2GJ70|RNH2_ANAPZ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|88598669|gb|ABD44139.1| ribonuclease HII [Anaplasma phagocytophilum HZ]
          Length = 210

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/201 (38%), Positives = 118/201 (58%), Gaps = 4/201 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHK 66
            P+F  E      +   V G+DEVG G++AGPVV AA+ +   N+     I DSK ++ K
Sbjct: 1   MPNFSYEDSFSHGSNAIVVGVDEVGYGSIAGPVVAAAVYIPDRNVECIPNIKDSKLLTPK 60

Query: 67  KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI-PRSALIDGRSI 125
           KR+ LY+++ S  +     AS   I++HNI  A+  A+  A+ENL +      L+DG   
Sbjct: 61  KRDALYKELLSHTVCGTGLASIDEIEEHNILVASHMAMRRALENLNLQRIDLVLVDGSR- 119

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
                  + ++I GD +S+SIAAASI+AKVTRD +MR  H +YP+Y ++ + GY TA H 
Sbjct: 120 ELKSQWPSKSIINGDELSISIAAASIVAKVTRDNMMRELHDQYPEYHWNKNCGYGTAAHI 179

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
             +K+ G + +HR TF P++ 
Sbjct: 180 LALKQHGATPLHRKTFAPVKK 200


>gi|323691868|ref|ZP_08106122.1| ribonuclease [Clostridium symbiosum WAL-14673]
 gi|323504075|gb|EGB19883.1| ribonuclease [Clostridium symbiosum WAL-14673]
          Length = 219

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/190 (43%), Positives = 109/190 (57%), Gaps = 3/190 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E    E     + GIDE GRG LAGPVV AA +L  + +   +NDSKK+S ++REEL+
Sbjct: 21  EYERKYEE--YSVICGIDEAGRGPLAGPVVAAAAVLPKDAVILWLNDSKKLSERRREELF 78

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I   A+   +   S   ID+ NI +AT +A+  AV  L   P   L D   IP     
Sbjct: 79  LEIREKAVAYGVGIVSPAVIDEINILQATYEAMRQAVSQLPAEPDIFLNDAVMIPGIDDK 138

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   +IKGD+ S+SIAAAS++AKVTRD +M    K YP+YGF  H GY T  H   I+E 
Sbjct: 139 KQVRIIKGDAKSVSIAAASVLAKVTRDHMMEEYDKLYPEYGFAKHKGYGTKAHMVAIREF 198

Query: 192 GPSCIHRLTF 201
           G   IHR +F
Sbjct: 199 GVCPIHRRSF 208


>gi|47093922|ref|ZP_00231661.1| ribonuclease HII [Listeria monocytogenes str. 4b H7858]
 gi|47017708|gb|EAL08502.1| ribonuclease HII [Listeria monocytogenes str. 4b H7858]
          Length = 204

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 87/195 (44%), Positives = 121/195 (62%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E  + ++    +AG+DEVGRG LAGPVV AA+IL  +    GINDSK++S  KR+ L+
Sbjct: 3   QYETDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALF 62

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E I   AI I +    H  ID+ NI++AT  A+  A++ L   P   LID    P     
Sbjct: 63  ETIKKEAIAIGVGIIEHDVIDQVNIYEATKLAMREALDQLTPEPDFVLIDAM--PLRYTE 120

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASIIAKVTRDRLM++  +KYP Y F +++GY T KH   +   
Sbjct: 121 AELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGTKKHLLGLDTI 180

Query: 192 GPSCIHRLTFRPLRN 206
           G   IHR++F P++ 
Sbjct: 181 GICPIHRISFAPVKE 195


>gi|312143696|ref|YP_003995142.1| Ribonuclease H [Halanaerobium sp. 'sapolanicus']
 gi|311904347|gb|ADQ14788.1| Ribonuclease H [Halanaerobium sp. 'sapolanicus']
          Length = 265

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 87/196 (44%), Positives = 122/196 (62%), Gaps = 4/196 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
            L+  +       V GIDE GRG LAGPVV AA++LD     +G++DSKK+S +KRE+L 
Sbjct: 68  SLQEKLESNGYQAVIGIDEAGRGPLAGPVVAAAVLLDSTKPIYGLDDSKKLSREKREKLL 127

Query: 73  EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL----QVIPRSALIDGRSIPED 128
           E+I   A + I  AS + IDK+NI +AT  A+  AV+NL    +  P   L+DG ++  D
Sbjct: 128 EEIKKKAKVGIGQASSKEIDKYNIREATFAAMKRAVKNLLPQLEEKPDLLLVDGNTVIPD 187

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L     AVI GD+   SIAAASI AKV+RD+++    ++YP+Y F S+ GY TA+H   +
Sbjct: 188 LKIDQKAVIDGDAKINSIAAASIAAKVSRDQIIFEYAEEYPEYNFKSNKGYGTAEHIAAL 247

Query: 189 KEKGPSCIHRLTFRPL 204
           +E G S IHR +F  +
Sbjct: 248 EEHGSSPIHRKSFGRV 263


>gi|300933906|ref|ZP_07149162.1| ribonuclease HII [Corynebacterium resistens DSM 45100]
          Length = 212

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/195 (38%), Positives = 106/195 (54%), Gaps = 4/195 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREE 70
           ++EA +    + PVAG+DE GRGA  GP+ +AA IL   +IP    + DSKK++ K+REE
Sbjct: 2   DMEAQLVAAGLGPVAGVDEAGRGACCGPISIAACILPEGDIPELARLTDSKKLTEKRREE 61

Query: 71  LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L+  I   A   +I   S + IDK  I  A +  +  AV NL + P   L D   +P  L
Sbjct: 62  LFGVIQEVANSYAIIHISAEEIDKLGIQHANVSGMRRAVANLDIEPGYVLTDAVQVP-GL 120

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                 V+KGD +   I+AAS++AKV+RDR MR    +YP YG   H GY T  H   + 
Sbjct: 121 AQPHLPVVKGDLMVRCISAASVLAKVSRDRFMRELDHEYPGYGLAGHKGYGTKAHMDAVS 180

Query: 190 EKGPSCIHRLTFRPL 204
             G +  HR T+  +
Sbjct: 181 LHGATPYHRYTYSNV 195


>gi|116333443|ref|YP_794970.1| ribonuclease HII [Lactobacillus brevis ATCC 367]
 gi|122269870|sp|Q03S83|RNH2_LACBA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|116098790|gb|ABJ63939.1| RNase HII [Lactobacillus brevis ATCC 367]
          Length = 257

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 87/198 (43%), Positives = 121/198 (61%), Gaps = 4/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
               E     +    VAGIDEVGRG LAGPVV +A+IL P+     +NDSK+++ K+RE 
Sbjct: 60  RLHYERPFWARG-ERVAGIDEVGRGPLAGPVVTSAVILPPDFDIPLVNDSKQLTAKERER 118

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY  I + A  +SI   S   ID+ NI++AT  A+  AV  L + P+  ++D   IP D+
Sbjct: 119 LYPLILAQAQSVSIGIGSPALIDQINIYQATRVAMQRAVLGLGLAPQQLIVDAMQIPVDV 178

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +IKGD+ S S+AAASI+AKV RD LM    + YP YGF  + GY TA+H Q + 
Sbjct: 179 P--QIRLIKGDAKSASVAAASIVAKVYRDHLMATYDELYPGYGFAQNAGYGTAEHLQGLA 236

Query: 190 EKGPSCIHRLTFRPLRNL 207
           ++G + IHR TF P++ +
Sbjct: 237 DRGVTPIHRRTFSPVQKI 254


>gi|295396862|ref|ZP_06806990.1| ribonuclease HII [Aerococcus viridans ATCC 11563]
 gi|294974888|gb|EFG50587.1| ribonuclease HII [Aerococcus viridans ATCC 11563]
          Length = 269

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/193 (43%), Positives = 113/193 (58%), Gaps = 1/193 (0%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +R++    +AG+DEVGRG LAGPVV +A+IL  +  P   NDSK++SH KR+ L   
Sbjct: 75  ENELRQQGYQLIAGVDEVGRGPLAGPVVTSAVILPSDMPPVYFNDSKQLSHTKRQALVAD 134

Query: 75  ITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI  +I   + + ID+ NI  AT  A+  A+  L   P   LID   + +      
Sbjct: 135 IEKYAIAKTIGIQTAEDIDQSNILIATKQAMMSALNQLHPAPDYVLIDAVHLNDYKKAPQ 194

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            A+IKGD+   +IAAASI AK  RD LM      YP YGF+++ GY T +H   +K+ GP
Sbjct: 195 EAIIKGDATVYAIAAASIYAKEYRDNLMAEYADLYPGYGFEANAGYGTKQHLDGLKKYGP 254

Query: 194 SCIHRLTFRPLRN 206
           S IHR TF P++N
Sbjct: 255 SPIHRKTFAPVKN 267


>gi|269121650|ref|YP_003309827.1| ribonuclease H [Sebaldella termitidis ATCC 33386]
 gi|268615528|gb|ACZ09896.1| Ribonuclease H [Sebaldella termitidis ATCC 33386]
          Length = 197

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/178 (44%), Positives = 107/178 (60%), Gaps = 2/178 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISI 83
            +AG+DE GRG LAGPVV AA+I++        INDSKK++ KKRE+LY  I     + I
Sbjct: 14  IIAGVDEAGRGPLAGPVVAAAVIIEDYFEELEEINDSKKLTEKKREKLYAVIREKRKVGI 73

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
            +A  + IDK NI  AT  A+  A+E +       L+DG     +   +   +IKGD  S
Sbjct: 74  GTADEKEIDKINILNATFLAMRRALEQIDN-YDIVLVDGNHKIREYSGRQEEIIKGDGRS 132

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           LSIAAASI+AKV RD +M+   ++YPDY F+ H GY T  H++++   G   IHR TF
Sbjct: 133 LSIAAASIVAKVYRDNIMKDFARQYPDYRFEKHKGYGTKLHRELLHAHGACKIHRKTF 190


>gi|255524250|ref|ZP_05391209.1| Ribonuclease H [Clostridium carboxidivorans P7]
 gi|296185372|ref|ZP_06853782.1| ribonuclease HII [Clostridium carboxidivorans P7]
 gi|255512075|gb|EET88356.1| Ribonuclease H [Clostridium carboxidivorans P7]
 gi|296050206|gb|EFG89630.1| ribonuclease HII [Clostridium carboxidivorans P7]
          Length = 293

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/192 (41%), Positives = 114/192 (59%), Gaps = 9/192 (4%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIIL-----DPNNIPFGINDSKKISHKKREELYEKIT 76
           N   +AG+DEVGRG LAGP+   +++L     D  ++  GI DSKK+SH  RE L + I 
Sbjct: 98  NYVYIAGVDEVGRGPLAGPIAAGSVVLNLRSHDFKDLLLGIKDSKKLSHDTRERLSKLIK 157

Query: 77  SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135
           + +I  +IS  ++  ID+  I     + +  A   L++ P   L DG ++ ++L  +   
Sbjct: 158 AKSISYNISVINNAEIDERGIAWCNNEVLRRAASGLKITPDLVLSDGYAV-KNLNIENEF 216

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           VIKGD+ S SIA ASIIAKV RD LM+   K YP YGF+ + GY T +H + IK+ G   
Sbjct: 217 VIKGDAKSASIACASIIAKVYRDNLMQEYAKIYPQYGFERNSGYGTEEHIEAIKKYGICK 276

Query: 196 IHRLTFRPLRNL 207
           IHR +F  L+N+
Sbjct: 277 IHRKSF--LKNI 286


>gi|254693174|ref|ZP_05155002.1| ribonuclease HII [Brucella abortus bv. 3 str. Tulya]
 gi|261213414|ref|ZP_05927695.1| ribonuclease HII [Brucella abortus bv. 3 str. Tulya]
 gi|260915021|gb|EEX81882.1| ribonuclease HII [Brucella abortus bv. 3 str. Tulya]
          Length = 220

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 96/203 (47%), Positives = 136/203 (66%), Gaps = 2/203 (0%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
            +P  P F  E  + ++ +  +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++
Sbjct: 13  DLPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLT 72

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
             +RE LYE I + AI +S++S S + ID  +I KA L+A+  AV  L + P  AL+DGR
Sbjct: 73  AARREALYEIILTKAITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGR 132

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +P  LPC   A++KGD   +SIAAASI+AKVTRDR+M  A   +P YG + H GY T K
Sbjct: 133 DVPPGLPCPGSALVKGDQRCVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQK 192

Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205
           H+  I+ +GP   +HR TF P++
Sbjct: 193 HRAAIESEGPVPGLHRYTFAPIK 215


>gi|269798033|ref|YP_003311933.1| ribonuclease HII/HIII [Veillonella parvula DSM 2008]
 gi|269094662|gb|ACZ24653.1| ribonuclease HII/HIII [Veillonella parvula DSM 2008]
          Length = 265

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 86/197 (43%), Positives = 130/197 (65%), Gaps = 2/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           ++ E M  ++ ++ VAG+DEVGRG +AGPV VAA+IL P  +  G+NDSKK++ +KRE L
Sbjct: 63  YDYEGMFYDQGIYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREAL 122

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I   A+ +S  S   + ID+ NI++ T  A+Y A+  L V   + + D   +P DL 
Sbjct: 123 YDIIMDEAVAVSCISYGPEKIDELNIYEVTRQAMYEAIRTLSVPAEAVVADAMKLP-DLT 181

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGDS S +IAAASIIAKVTRDR M+    ++P YGF  H GY T  H++ I++
Sbjct: 182 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDDEFPGYGFGIHKGYYTELHKEAIEQ 241

Query: 191 KGPSCIHRLTFRPLRNL 207
           +G + +HR +F P++++
Sbjct: 242 QGVTPLHRKSFEPIKSI 258


>gi|124515656|gb|EAY57165.1| ribonuclease HII [Leptospirillum rubarum]
 gi|206602288|gb|EDZ38770.1| Ribonuclease HII [Leptospirillum sp. Group II '5-way CG']
          Length = 228

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 90/209 (43%), Positives = 114/209 (54%), Gaps = 9/209 (4%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISHK 66
           P  +LE    +K    VAG+DEVGRGALAGPVV AA+IL          GI DSK +S  
Sbjct: 4   PQADLEREFYKKGFLRVAGVDEVGRGALAGPVVAAAVILPMPLEFFENIGIRDSKLLSPS 63

Query: 67  KREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           KR  L +++ S     S+  ++   I+  NI +ATL A+  AVE L   P   L+DGR I
Sbjct: 64  KRVALSDRLRSLLFSWSVGESTVSEINALNIRRATLLAMKRAVEGLPEFPDILLVDGREI 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
             DL C+  +   GD   LSIAAASIIAKV RD +M      Y  YG   + GY TA+H+
Sbjct: 124 VPDLVCKQESFTGGDRRILSIAAASIIAKVYRDNMMSELDNAYAGYGLAENKGYGTAQHR 183

Query: 186 QVIKEKGPSCIHR----LTF-RPLRNLSV 209
             +  +G S IHR     TF  P R  S+
Sbjct: 184 DGLLLRGVSSIHRAVFCKTFLEPFRKKSI 212


>gi|163842670|ref|YP_001627074.1| ribonuclease HII [Brucella suis ATCC 23445]
 gi|189043569|sp|B0CK74|RNH2_BRUSI RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|163673393|gb|ABY37504.1| Ribonuclease HII [Brucella suis ATCC 23445]
          Length = 220

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 98/203 (48%), Positives = 138/203 (67%), Gaps = 2/203 (0%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
            +P  P F  E  + ++ +  +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++
Sbjct: 13  DLPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLT 72

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
             +RE LYE I + AI +S++S S + ID  +IHKA L+A+  AV  L + P  AL+DGR
Sbjct: 73  AARREALYEIILTKAITVSVASLSARSIDASDIHKAALEAMRRAVIGLTLKPCHALVDGR 132

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +P  LPC   A++KGD  S+SIAAASI+AKVTRDR+M  A   +P YG + H GY T K
Sbjct: 133 DVPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQK 192

Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205
           H+  I+ +GP   +HR TF P++
Sbjct: 193 HRAAIESEGPVPGLHRYTFAPIK 215


>gi|110633060|ref|YP_673268.1| ribonuclease HII [Mesorhizobium sp. BNC1]
 gi|110284044|gb|ABG62103.1| RNase HII [Chelativorans sp. BNC1]
          Length = 258

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 97/203 (47%), Positives = 135/203 (66%), Gaps = 2/203 (0%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
            +P RP F +E  +  + + PVAG+DE GRG LAGPVV AA++LDP+ IP G++DSK+++
Sbjct: 18  DLPVRPDFTIEWKIMREGLAPVAGLDEAGRGPLAGPVVAAAVVLDPDRIPEGLDDSKRLT 77

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            + RE L ++I   A  +S++S     ID+ NI KA+L+A+  A++ L V P  AL DGR
Sbjct: 78  AEARERLVQEIFEVAAAVSVASLCAASIDESNILKASLEAMRRALDGLCVRPAYALADGR 137

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            IP  LPC   AV+KGD  S SIAAAS++AKV RDR+M       P YGF SHVGY T +
Sbjct: 138 DIPPGLPCPCRAVVKGDQRSQSIAAASMVAKVVRDRMMVRTGTLMPHYGFHSHVGYATER 197

Query: 184 HQQVIKEKGP-SCIHRLTFRPLR 205
           H++ I   GP + +HR++F P +
Sbjct: 198 HREAITAYGPVTRLHRMSFSPFK 220


>gi|254718570|ref|ZP_05180381.1| ribonuclease HII [Brucella sp. 83/13]
 gi|265983545|ref|ZP_06096280.1| ribonuclease HII [Brucella sp. 83/13]
 gi|264662137|gb|EEZ32398.1| ribonuclease HII [Brucella sp. 83/13]
          Length = 220

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 97/203 (47%), Positives = 136/203 (66%), Gaps = 2/203 (0%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
            +P  P F  E  + ++    +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++
Sbjct: 13  DLPLAPDFSQEQQLMKRGSKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLT 72

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
             +RE LYE I + AI +S++S S + ID  +I KA L+A+  AV  L + P  AL+DGR
Sbjct: 73  AARREALYEIILAKAIAVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGR 132

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +P  LPC   A++KGD  S+SIAAASI+AKVTRDR+M  A   +P YG + H GY T K
Sbjct: 133 DVPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYGTQK 192

Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205
           H+  I+ +GP   +HR TF P++
Sbjct: 193 HRAAIESEGPVPGLHRYTFAPIK 215


>gi|71907386|ref|YP_284973.1| ribonuclease HII/HIII [Dechloromonas aromatica RCB]
 gi|97182398|sp|Q47F78|RNH2_DECAR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|71847007|gb|AAZ46503.1| RNase HII [Dechloromonas aromatica RCB]
          Length = 196

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 94/188 (50%), Positives = 121/188 (64%), Gaps = 3/188 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             V GIDE GRG LAGPVV AA+ILDP     G+NDSKK+S KKR+ L E I   A+  +
Sbjct: 9   GLVCGIDEAGRGPLAGPVVAAAVILDPERPIVGLNDSKKLSEKKRDALAEIIRERALAWA 68

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           ++ A+ + ID+ NI +AT+ A+  AV  LQV   SAL+DG   P+ L     AV+KGD  
Sbjct: 69  VAEATVEEIDRLNILQATMLAMQRAVAALQVKAESALVDGNRCPK-LDIPCEAVVKGDGK 127

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             SIAAASI+AK  RD  M + H +YP YGFD H+GYPTA H   ++  G S +HR +F 
Sbjct: 128 IASIAAASILAKTVRDAGMLVLHAQYPHYGFDRHMGYPTAAHFAALEAHGASPVHRRSFG 187

Query: 203 PL-RNLSV 209
           P+ R LS+
Sbjct: 188 PVARQLSL 195


>gi|295094900|emb|CBK83991.1| Ribonuclease HII [Coprococcus sp. ART55/1]
          Length = 251

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 90/197 (45%), Positives = 125/197 (63%), Gaps = 6/197 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           FE E    +K    + GIDEVGRG LAGPVV AA+IL  +     +NDSK+++ KKRE L
Sbjct: 59  FEFERKYADKGY--ICGIDEVGRGPLAGPVVAAAVILPKDCDILYLNDSKQLTPKKREAL 116

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y++I + A+ + +  A+ + ID+ N+  A  +A+  A+  LQV P+  L D  +IP  + 
Sbjct: 117 YDEIMAKAVAVGVGMANEKVIDEINVLNADYEAMKQAISKLQVKPQLLLNDAVNIP-GVD 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            +   +IKGD++S SIAAASIIAKVTRDRLM      YP YGF  ++GY TA+H   +K+
Sbjct: 176 IEQVGIIKGDTLSASIAAASIIAKVTRDRLMVEYDSLYPGYGFAKNMGYGTAEHIDALKK 235

Query: 191 KGPSCIHRLTFRPLRNL 207
            GP  IHR TF  ++N 
Sbjct: 236 IGPCAIHRRTF--IKNF 250


>gi|205373355|ref|ZP_03226159.1| ribonuclease HII [Bacillus coahuilensis m4-4]
          Length = 253

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 88/196 (44%), Positives = 129/196 (65%), Gaps = 3/196 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E  + E  +  +AG+DEVGRG LAGPVV AA+IL  +    G++DSKK++  K+EE++
Sbjct: 58  QYEKKLWEGGIKRIAGVDEVGRGPLAGPVVAAAVILPQSFYYPGLDDSKKLTESKKEEMF 117

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           + I ++AI +S+S  +H  ID  NI++AT  A+  A+  L + P   LID   +   +  
Sbjct: 118 DYINATAISVSVSIINHDVIDTVNIYEATKLAMQQAINGLDLTPEYLLIDAMKL--SMGI 175

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +  ++IKGDS S+SIAAASIIAKVTRDRLM+     YP Y F+ ++GY T +H + +K  
Sbjct: 176 EEESIIKGDSKSISIAAASIIAKVTRDRLMKEYATTYPHYAFERNMGYGTTEHLEGLKSV 235

Query: 192 GPSCIHRLTFRPLRNL 207
           GPS IHR +F P++ L
Sbjct: 236 GPSPIHRRSFAPIKEL 251


>gi|313619218|gb|EFR90981.1| ribonuclease HII [Listeria innocua FSL S4-378]
          Length = 261

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 86/195 (44%), Positives = 117/195 (60%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  + ++    +AG+DEVGRG LAGPVV AA+IL  +    GINDSK+++  KR+ L+
Sbjct: 60  RYETDLFKQGFQYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLNEAKRDILF 119

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           + I   AI I I    H  ID+ NI++AT  A+  A+E L   P   LID    P     
Sbjct: 120 DVIKEEAISIGIGIIDHDVIDQVNIYEATKIAMRTALEELNPAPDFVLIDAM--PLKYSE 177

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASIIAKVTRDR+M+     YP Y F +++GY T KH   +   
Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRMMQQYDALYPGYDFVNNMGYGTKKHLNGLDTI 237

Query: 192 GPSCIHRLTFRPLRN 206
           G   IHRL+F P++ 
Sbjct: 238 GICPIHRLSFSPVKE 252


>gi|313892616|ref|ZP_07826203.1| ribonuclease HII [Dialister microaerophilus UPII 345-E]
 gi|313119013|gb|EFR42218.1| ribonuclease HII [Dialister microaerophilus UPII 345-E]
          Length = 264

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 86/199 (43%), Positives = 128/199 (64%), Gaps = 3/199 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           + +E+   ++ M  V GIDEVGRG LAGPV VAA+IL P+     +NDSKK+S +KRE +
Sbjct: 56  YAVESEFYKQGMQYVVGIDEVGRGPLAGPVTVAAVILKPHWFVENLNDSKKVSKEKREII 115

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            +KI   A+ ISI+  S + ID  NI++AT+ A+Y AV+ L++ P++ ++D    P    
Sbjct: 116 SKKIHEEALAISITDLSVEEIDTLNIYQATMLAMYQAVKKLEIKPQAVIVDAM--PLHFQ 173

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++I GDS S S+AAASI+AKV RD +M    K YP Y F+ + GY T KH + I E
Sbjct: 174 VPCKSLIHGDSKSASVAAASIVAKVHRDHIMDEYAKIYPGYDFEDNKGYGTKKHMEAIYE 233

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            G + IHR ++ P++++ +
Sbjct: 234 LGITPIHRKSYEPVKSIVL 252


>gi|281424964|ref|ZP_06255877.1| ribonuclease HII [Prevotella oris F0302]
 gi|281400808|gb|EFB31639.1| ribonuclease HII [Prevotella oris F0302]
          Length = 223

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 72/186 (38%), Positives = 103/186 (55%), Gaps = 11/186 (5%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL P+     +NDSKK+S ++R  L E+I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPPDYDNPALNDSKKLSVRQRYALREQIEHDALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-----DLP-----CQAFA 135
           A+ + ID+ NI  A+  A++ A++ L++ P + ++DG           LP          
Sbjct: 73  ATPEEIDEINILHASFLAMHRALDQLKIRPEAVIVDGNHFDPYVVGKGLPNAGKQLPHTC 132

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           VIKGD    +IAAASI+AK  RD  M    K YP Y ++ + GYPT KH   I E G   
Sbjct: 133 VIKGDGKYQNIAAASILAKTYRDDYMTEQAKLYPFYDWEKNKGYPTKKHYAGIAEHGICE 192

Query: 196 IHRLTF 201
           +HR ++
Sbjct: 193 LHRRSY 198


>gi|328952474|ref|YP_004369808.1| Ribonuclease H [Desulfobacca acetoxidans DSM 11109]
 gi|328452798|gb|AEB08627.1| Ribonuclease H [Desulfobacca acetoxidans DSM 11109]
          Length = 215

 Score =  231 bits (591), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 81/197 (41%), Positives = 114/197 (57%), Gaps = 6/197 (3%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           +LE   R + +  +AG+DEVGRG LAGPVV AA+IL  +++   + DSK+++  +RE   
Sbjct: 19  DLEEAYRRQGIRFIAGVDEVGRGPLAGPVVAAAVILASDSVFPRLTDSKQLTPARREFFD 78

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            ++   A+  +I       I+   I  A+L A+  AV++L + P   LIDG   P  L  
Sbjct: 79  RQVRDQALAFAIQEVGVPEIESLGILSASLKAMALAVQSLVLKPELVLIDG---PWGLQI 135

Query: 132 QAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           Q       KGD   LSIAAAS++AKV RDR M+  H+ YP Y F SH GY T +H + I+
Sbjct: 136 QVQQQPIIKGDQRCLSIAAASVLAKVYRDRQMQAIHELYPHYNFASHKGYGTREHLEAIR 195

Query: 190 EKGPSCIHRLTFRPLRN 206
             GP  +HR TFR +R 
Sbjct: 196 RWGPCPVHRRTFRGVRE 212


>gi|114048186|ref|YP_738736.1| ribonuclease HII [Shewanella sp. MR-7]
 gi|123131228|sp|Q0HT76|RNH2_SHESR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|113889628|gb|ABI43679.1| RNase HII [Shewanella sp. MR-7]
          Length = 209

 Score =  231 bits (591), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 85/189 (44%), Positives = 112/189 (59%), Gaps = 5/189 (2%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG L G VV AA+ILDPN    G+NDSKK++ K+RE L+++I   A+   
Sbjct: 18  GLVAGVDEVGRGPLVGDVVTAAVILDPNRPIAGLNDSKKLTEKRREALFDEICEKALSFH 77

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE----DLPCQAFAVIK 138
           +  AS   ID+ NI  AT+ A+  AV  L + P   L+DG   P          + +++K
Sbjct: 78  VGRASPAEIDELNILHATMLAMQRAVAGLSLTPELVLVDGNRSPAFNHAGQALTSHSIVK 137

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD +  SI+AASIIAKVTRDR M      YP YGF  H GYPT  H   I E G    +R
Sbjct: 138 GDGLIASISAASIIAKVTRDREMDALDAAYPQYGFAKHKGYPTKAHFDAIAEHGVFDQYR 197

Query: 199 LTFRPLRNL 207
            +F+P++ L
Sbjct: 198 KSFKPVKAL 206


>gi|313206271|ref|YP_004045448.1| ribonuclease h [Riemerella anatipestifer DSM 15868]
 gi|312445587|gb|ADQ81942.1| Ribonuclease H [Riemerella anatipestifer DSM 15868]
 gi|325336287|gb|ADZ12561.1| Ribonuclease HII [Riemerella anatipestifer RA-GD]
          Length = 194

 Score =  231 bits (591), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 77/177 (43%), Positives = 109/177 (61%), Gaps = 1/177 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG L GPVV AA+ILD N     INDSKK++ K R EL   I   A+  +I+ 
Sbjct: 14  AGCDEAGRGCLCGPVVAAAVILDENFEQNLINDSKKLNFKTRNELDLYIKDYALDYAIAE 73

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
               +ID+HNI  A++ A++ A++ L + P   L+DG             +IKGDS  LS
Sbjct: 74  LPPSFIDEHNILNASIHAMHLALDKLTIRPELILVDGNRFKPYPFTPHECIIKGDSKVLS 133

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           IAAASI+AK  RD +M   H++YP+YG++ + GY T +H++ + + GP+  HR +FR
Sbjct: 134 IAAASILAKNYRDHVMIKLHEEYPEYGWNKNFGYATKQHREALNKLGPTIHHRKSFR 190


>gi|62289376|ref|YP_221169.1| ribonuclease HII [Brucella abortus bv. 1 str. 9-941]
 gi|82699301|ref|YP_413875.1| ribonuclease HII [Brucella melitensis biovar Abortus 2308]
 gi|237814863|ref|ZP_04593861.1| Ribonuclease HII [Brucella abortus str. 2308 A]
 gi|254688691|ref|ZP_05151945.1| ribonuclease HII [Brucella abortus bv. 6 str. 870]
 gi|254696818|ref|ZP_05158646.1| ribonuclease HII [Brucella abortus bv. 2 str. 86/8/59]
 gi|254729725|ref|ZP_05188303.1| ribonuclease HII [Brucella abortus bv. 4 str. 292]
 gi|256256938|ref|ZP_05462474.1| ribonuclease HII [Brucella abortus bv. 9 str. C68]
 gi|260545871|ref|ZP_05821612.1| ribonuclease HII [Brucella abortus NCTC 8038]
 gi|260754167|ref|ZP_05866515.1| ribonuclease HII [Brucella abortus bv. 6 str. 870]
 gi|260757387|ref|ZP_05869735.1| ribonuclease HII [Brucella abortus bv. 4 str. 292]
 gi|260761211|ref|ZP_05873554.1| ribonuclease HII [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883192|ref|ZP_05894806.1| ribonuclease HII [Brucella abortus bv. 9 str. C68]
 gi|297247789|ref|ZP_06931507.1| ribonuclease HII [Brucella abortus bv. 5 str. B3196]
 gi|73917601|sp|Q57EX6|RNH2_BRUAB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|97182300|sp|Q2YMC3|RNH2_BRUA2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|62195508|gb|AAX73808.1| RnhB, ribonuclease HII [Brucella abortus bv. 1 str. 9-941]
 gi|82615402|emb|CAJ10371.1| Ribonuclease HII/HIII [Brucella melitensis biovar Abortus 2308]
 gi|237789700|gb|EEP63910.1| Ribonuclease HII [Brucella abortus str. 2308 A]
 gi|260097278|gb|EEW81153.1| ribonuclease HII [Brucella abortus NCTC 8038]
 gi|260667705|gb|EEX54645.1| ribonuclease HII [Brucella abortus bv. 4 str. 292]
 gi|260671643|gb|EEX58464.1| ribonuclease HII [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674275|gb|EEX61096.1| ribonuclease HII [Brucella abortus bv. 6 str. 870]
 gi|260872720|gb|EEX79789.1| ribonuclease HII [Brucella abortus bv. 9 str. C68]
 gi|297174958|gb|EFH34305.1| ribonuclease HII [Brucella abortus bv. 5 str. B3196]
          Length = 220

 Score =  231 bits (591), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 97/203 (47%), Positives = 137/203 (67%), Gaps = 2/203 (0%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
            +P  P F  E  + ++ +  +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++
Sbjct: 13  DLPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLT 72

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
             +RE LYE I + AI +S++S S + ID  +I KA L+A+  AV  L + P  AL+DGR
Sbjct: 73  AARREALYEIILTKAITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGR 132

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +P  LPC   A++KGD  S+SIAAASI+AKVTRDR+M  A   +P YG + H GY T K
Sbjct: 133 DVPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQK 192

Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205
           H+  I+ +GP   +HR TF P++
Sbjct: 193 HRAAIESEGPVPGLHRYTFAPIK 215


>gi|189043695|sp|Q11KH2|RNH2_MESSB RecName: Full=Ribonuclease HII; Short=RNase HII
          Length = 253

 Score =  231 bits (591), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 97/203 (47%), Positives = 135/203 (66%), Gaps = 2/203 (0%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
            +P RP F +E  +  + + PVAG+DE GRG LAGPVV AA++LDP+ IP G++DSK+++
Sbjct: 13  DLPVRPDFTIEWKIMREGLAPVAGLDEAGRGPLAGPVVAAAVVLDPDRIPEGLDDSKRLT 72

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            + RE L ++I   A  +S++S     ID+ NI KA+L+A+  A++ L V P  AL DGR
Sbjct: 73  AEARERLVQEIFEVAAAVSVASLCAASIDESNILKASLEAMRRALDGLCVRPAYALADGR 132

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            IP  LPC   AV+KGD  S SIAAAS++AKV RDR+M       P YGF SHVGY T +
Sbjct: 133 DIPPGLPCPCRAVVKGDQRSQSIAAASMVAKVVRDRMMVRTGTLMPHYGFHSHVGYATER 192

Query: 184 HQQVIKEKGP-SCIHRLTFRPLR 205
           H++ I   GP + +HR++F P +
Sbjct: 193 HREAITAYGPVTRLHRMSFSPFK 215


>gi|330836476|ref|YP_004411117.1| Ribonuclease H [Spirochaeta coccoides DSM 17374]
 gi|329748379|gb|AEC01735.1| Ribonuclease H [Spirochaeta coccoides DSM 17374]
          Length = 210

 Score =  231 bits (591), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 77/180 (42%), Positives = 101/180 (56%), Gaps = 4/180 (2%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
            + GIDE GRG LAGPV  AA+IL P+     + DSKK+S K+R      I   A+  I 
Sbjct: 19  RICGIDEAGRGPLAGPVCAAAVILPPDFPRDILGDSKKLSEKQRLAAEIIIREQAVWGIG 78

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
            AS Q ID++NI +AT  A+  AVE +          LIDG          + A+IKGDS
Sbjct: 79  WASAQEIDRYNILQATFRAMRRAVEKVIAQDRQVELLLIDGNRTFPH-AIPSAAIIKGDS 137

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
               I AASI+AK  RDR MR   +K+P+Y F+ H GYP+ +H    +  GP  +HRL+F
Sbjct: 138 KVPEIMAASILAKTARDRFMRRMAEKWPEYNFEQHKGYPSRQHVSAYRTHGPCPLHRLSF 197


>gi|330444662|ref|YP_004377648.1| ribonuclease HII [Chlamydophila pecorum E58]
 gi|328807772|gb|AEB41945.1| ribonuclease HII [Chlamydophila pecorum E58]
          Length = 209

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 86/195 (44%), Positives = 122/195 (62%), Gaps = 4/195 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  + ++    VAG+DE GRG LAGPVV  A IL  N +  GINDSK+++ K+R  + 
Sbjct: 11  AFERELAQEGFTLVAGVDEAGRGPLAGPVVAGACILPKNKVFLGINDSKQLTPKQRGLIR 70

Query: 73  EKIT--SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           E +   S  I  I   S + ID+ NI +AT +A++ A+ +L ++P   L+DG  +   +P
Sbjct: 71  ETLLCDSEVISGIGVVSVERIDEINILEATKEAMHQAIASLSLVPDFLLVDGLHLSHRVP 130

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
           C+   +IKGD+ S SIAAASI+AK  RD LMR  H+KYP+YGFD H GY TA H + ++ 
Sbjct: 131 CK--KIIKGDARSASIAAASILAKEHRDDLMRDLHQKYPEYGFDKHKGYGTAAHMEALRR 188

Query: 191 KGPSCIHRLTFRPLR 205
            G S  HR +F P++
Sbjct: 189 YGASPCHRRSFSPVK 203


>gi|51893167|ref|YP_075858.1| ribonuclease HII [Symbiobacterium thermophilum IAM 14863]
 gi|81388613|sp|Q67MS9|RNH22_SYMTH RecName: Full=Ribonuclease HII 2; Short=RNase HII 2
 gi|51856856|dbj|BAD41014.1| ribonuclease HII [Symbiobacterium thermophilum IAM 14863]
          Length = 211

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 78/203 (38%), Positives = 109/203 (53%), Gaps = 11/203 (5%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
                LE ++       V G+DE GRG LAGPVV AA IL P+    G++DSK+++ K+R
Sbjct: 1   MADLRLERVLWRHGCQ-VIGVDEAGRGPLAGPVVAAACILPPDAALPGVDDSKRMTEKRR 59

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS---------A 118
           E  +  I + A+   I       ID+ NI +AT +A+  AVE  + +  +          
Sbjct: 60  EAAFAAIQAVAVGWGIGIVDAARIDEINILQATFEAMAQAVEGARAMAAARPGRTAEAAL 119

Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
           L+DG       P     V+ GD  SLSIAAASI+AKVTRDR+M      YP+YGF  + G
Sbjct: 120 LVDGNRPLPLWPGWQRTVVGGDHKSLSIAAASILAKVTRDRMMIEYDAHYPEYGFARNKG 179

Query: 179 YPTAKHQQVIKEKGPSCIHRLTF 201
           Y + +H   ++  GP  +HR TF
Sbjct: 180 YGSREHWDALERYGPCPLHRRTF 202


>gi|146328634|ref|YP_001209596.1| ribonuclease HII [Dichelobacter nodosus VCS1703A]
 gi|189043593|sp|A5EV63|RNH2_DICNV RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|146232104|gb|ABQ13082.1| ribonuclease HII [Dichelobacter nodosus VCS1703A]
          Length = 189

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 84/183 (45%), Positives = 113/183 (61%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           +AG+DE GRGA  G VV AA+IL  +     + DSKK+S  KRE L   I   AI ++ +
Sbjct: 2   IAGVDEAGRGAWIGNVVAAAVILPNDYDLPDLTDSKKLSAAKRERLCAAIYEQAIAVACA 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S + ID+ NIH ATL A+  AV  L+V P   LIDG+  PE LP     +I GD++  
Sbjct: 62  WCSPEEIDQLNIHYATLCAMKKAVITLKVAPTEVLIDGKFAPE-LPFPTRTIIGGDALEP 120

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AKVTRD+ M      YPDYGF +H GY T KHQQ +++ G   +HR ++ P+
Sbjct: 121 AISAASIVAKVTRDKQMIALDALYPDYGFAAHKGYGTQKHQQALRQFGVLPLHRRSYAPI 180

Query: 205 RNL 207
             L
Sbjct: 181 AAL 183


>gi|296127016|ref|YP_003634268.1| ribonuclease H [Brachyspira murdochii DSM 12563]
 gi|296018832|gb|ADG72069.1| Ribonuclease H [Brachyspira murdochii DSM 12563]
          Length = 232

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 84/206 (40%), Positives = 114/206 (55%), Gaps = 13/206 (6%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----------PNNIPFGINDSK 61
           F  E          + GIDEVGRG L GPV VAA+I+             NI    +DSK
Sbjct: 16  FAYEKEYLSLGYKYICGIDEVGRGCLFGPVTVAAVIMPLELNNDVEVARENIVEEADDSK 75

Query: 62  KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           KIS KKREELY+KI S A+  S+ S   + ID+ NI+ AT  A+ +AV NL + P   LI
Sbjct: 76  KISAKKREELYDKIISKALCYSVYSVDAKTIDEINIYNATKLAMVNAVRNLNIKPDILLI 135

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           D   +  D+  +  ++ KGD  S SI  ASI+AKV RDR+M    + Y  Y    + GY 
Sbjct: 136 DAVKL--DIDIKQCSITKGDFKSYSIGCASIVAKVERDRMMNELPEVYQKYKVAKNKGYG 193

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206
           T +H + I+  G S +HR +F P+++
Sbjct: 194 TKEHMKAIEMYGASDMHRYSFEPIKS 219


>gi|82750847|ref|YP_416588.1| ribonuclease HII [Staphylococcus aureus RF122]
 gi|97189311|sp|Q2YXM2|RNH2_STAAB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|82656378|emb|CAI80797.1| ribonuclease HII [Staphylococcus aureus RF122]
          Length = 255

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +++E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACAPILNSNHNYLGLDDSKKVPVTK 115

Query: 68  REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAFAFGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP    ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ + GY T +H  
Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            I + G    HR +F P+++L
Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254


>gi|254455368|ref|ZP_05068797.1| ribonuclease HII [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082370|gb|EDZ59796.1| ribonuclease HII [Candidatus Pelagibacter sp. HTCC7211]
          Length = 190

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 82/184 (44%), Positives = 109/184 (59%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82
           M  +AG+DEVGRG+L GPV  AA+IL+ N     + DSK IS  KRE L   I  ++I  
Sbjct: 1   MKIIAGVDEVGRGSLIGPVYAAAVILNKNIDKKLLKDSKTISKIKRELLSNYIKKNSIWV 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I  AS + IDK NI +A+L A+  A++ L+  P   LIDG  +P+       A+IKGD  
Sbjct: 61  IGKASVKEIDKINILQASLLAMKRAIKKLKKKPTQILIDGNKVPDIKNYNLKAIIKGDKK 120

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             SI+AASIIAKV RD+ +    K    Y +D + GY T +H + IK+ G S  HR TF 
Sbjct: 121 IPSISAASIIAKVARDKFITSLAKTNKGYHWDQNFGYGTKQHLKAIKKLGISKHHRKTFS 180

Query: 203 PLRN 206
           P+ N
Sbjct: 181 PINN 184


>gi|17987825|ref|NP_540459.1| ribonuclease HII [Brucella melitensis bv. 1 str. 16M]
 gi|23501290|ref|NP_697417.1| ribonuclease HII [Brucella suis 1330]
 gi|161618362|ref|YP_001592249.1| ribonuclease HII [Brucella canis ATCC 23365]
 gi|225626901|ref|ZP_03784940.1| Ribonuclease HII [Brucella ceti str. Cudo]
 gi|225851926|ref|YP_002732159.1| ribonuclease HII [Brucella melitensis ATCC 23457]
 gi|254701198|ref|ZP_05163026.1| ribonuclease HII [Brucella suis bv. 5 str. 513]
 gi|254703743|ref|ZP_05165571.1| ribonuclease HII [Brucella suis bv. 3 str. 686]
 gi|254707877|ref|ZP_05169705.1| ribonuclease HII [Brucella pinnipedialis M163/99/10]
 gi|254709539|ref|ZP_05171350.1| ribonuclease HII [Brucella pinnipedialis B2/94]
 gi|254713044|ref|ZP_05174855.1| ribonuclease HII [Brucella ceti M644/93/1]
 gi|254716603|ref|ZP_05178414.1| ribonuclease HII [Brucella ceti M13/05/1]
 gi|256031033|ref|ZP_05444647.1| ribonuclease HII [Brucella pinnipedialis M292/94/1]
 gi|256044108|ref|ZP_05447019.1| ribonuclease HII [Brucella melitensis bv. 1 str. Rev.1]
 gi|256060525|ref|ZP_05450694.1| ribonuclease HII [Brucella neotomae 5K33]
 gi|256112906|ref|ZP_05453822.1| ribonuclease HII [Brucella melitensis bv. 3 str. Ether]
 gi|256159091|ref|ZP_05456917.1| ribonuclease HII [Brucella ceti M490/95/1]
 gi|256254436|ref|ZP_05459972.1| ribonuclease HII [Brucella ceti B1/94]
 gi|256264562|ref|ZP_05467094.1| ribonuclease HII [Brucella melitensis bv. 2 str. 63/9]
 gi|256368842|ref|YP_003106348.1| ribonuclease HII [Brucella microti CCM 4915]
 gi|260168165|ref|ZP_05754976.1| ribonuclease HII [Brucella sp. F5/99]
 gi|260563467|ref|ZP_05833953.1| ribonuclease HII [Brucella melitensis bv. 1 str. 16M]
 gi|260567002|ref|ZP_05837472.1| ribonuclease HII [Brucella suis bv. 4 str. 40]
 gi|261218402|ref|ZP_05932683.1| ribonuclease HII [Brucella ceti M13/05/1]
 gi|261221604|ref|ZP_05935885.1| ribonuclease HII [Brucella ceti B1/94]
 gi|261315368|ref|ZP_05954565.1| ribonuclease HII [Brucella pinnipedialis M163/99/10]
 gi|261317065|ref|ZP_05956262.1| ribonuclease HII [Brucella pinnipedialis B2/94]
 gi|261320749|ref|ZP_05959946.1| ribonuclease HII [Brucella ceti M644/93/1]
 gi|261324519|ref|ZP_05963716.1| ribonuclease HII [Brucella neotomae 5K33]
 gi|261751735|ref|ZP_05995444.1| ribonuclease HII [Brucella suis bv. 5 str. 513]
 gi|261754388|ref|ZP_05998097.1| ribonuclease HII [Brucella suis bv. 3 str. 686]
 gi|261757623|ref|ZP_06001332.1| ribonuclease HII [Brucella sp. F5/99]
 gi|265988103|ref|ZP_06100660.1| ribonuclease HII [Brucella pinnipedialis M292/94/1]
 gi|265990520|ref|ZP_06103077.1| ribonuclease HII [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994348|ref|ZP_06106905.1| ribonuclease HII [Brucella melitensis bv. 3 str. Ether]
 gi|265997568|ref|ZP_06110125.1| ribonuclease HII [Brucella ceti M490/95/1]
 gi|61234184|sp|P0A4D9|RNH2_BRUME RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|61234188|sp|P0A4E0|RNH2_BRUSU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|189043568|sp|A9M8G2|RNH2_BRUC2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807968|sp|C0RH97|RNH2_BRUMB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|2984785|gb|AAC08032.1| ribonuclease HII [Brucella melitensis]
 gi|17983553|gb|AAL52723.1| ribonuclease hii [Brucella melitensis bv. 1 str. 16M]
 gi|23347178|gb|AAN29332.1| ribonuclease HII [Brucella suis 1330]
 gi|161335173|gb|ABX61478.1| Ribonuclease HII [Brucella canis ATCC 23365]
 gi|225618558|gb|EEH15601.1| Ribonuclease HII [Brucella ceti str. Cudo]
 gi|225640291|gb|ACO00205.1| Ribonuclease HII [Brucella melitensis ATCC 23457]
 gi|255999000|gb|ACU47399.1| ribonuclease HII [Brucella microti CCM 4915]
 gi|260153483|gb|EEW88575.1| ribonuclease HII [Brucella melitensis bv. 1 str. 16M]
 gi|260156520|gb|EEW91600.1| ribonuclease HII [Brucella suis bv. 4 str. 40]
 gi|260920188|gb|EEX86841.1| ribonuclease HII [Brucella ceti B1/94]
 gi|260923491|gb|EEX90059.1| ribonuclease HII [Brucella ceti M13/05/1]
 gi|261293439|gb|EEX96935.1| ribonuclease HII [Brucella ceti M644/93/1]
 gi|261296288|gb|EEX99784.1| ribonuclease HII [Brucella pinnipedialis B2/94]
 gi|261300499|gb|EEY03996.1| ribonuclease HII [Brucella neotomae 5K33]
 gi|261304394|gb|EEY07891.1| ribonuclease HII [Brucella pinnipedialis M163/99/10]
 gi|261737607|gb|EEY25603.1| ribonuclease HII [Brucella sp. F5/99]
 gi|261741488|gb|EEY29414.1| ribonuclease HII [Brucella suis bv. 5 str. 513]
 gi|261744141|gb|EEY32067.1| ribonuclease HII [Brucella suis bv. 3 str. 686]
 gi|262552036|gb|EEZ08026.1| ribonuclease HII [Brucella ceti M490/95/1]
 gi|262765461|gb|EEZ11250.1| ribonuclease HII [Brucella melitensis bv. 3 str. Ether]
 gi|263001304|gb|EEZ13879.1| ribonuclease HII [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094927|gb|EEZ18635.1| ribonuclease HII [Brucella melitensis bv. 2 str. 63/9]
 gi|264660300|gb|EEZ30561.1| ribonuclease HII [Brucella pinnipedialis M292/94/1]
 gi|326408425|gb|ADZ65490.1| ribonuclease HII [Brucella melitensis M28]
 gi|326538139|gb|ADZ86354.1| ribonuclease HII [Brucella melitensis M5-90]
          Length = 220

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 97/203 (47%), Positives = 137/203 (67%), Gaps = 2/203 (0%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
            +P  P F  E  + ++ +  +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++
Sbjct: 13  DLPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLT 72

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
             +RE LYE I + AI +S++S S + ID  +I KA L+A+  AV  L + P  AL+DGR
Sbjct: 73  AARREALYEIILTKAITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGR 132

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +P  LPC   A++KGD  S+SIAAASI+AKVTRDR+M  A   +P YG + H GY T K
Sbjct: 133 DVPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQK 192

Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205
           H+  I+ +GP   +HR TF P++
Sbjct: 193 HRAAIESEGPVPGLHRYTFAPIK 215


>gi|167747194|ref|ZP_02419321.1| hypothetical protein ANACAC_01908 [Anaerostipes caccae DSM 14662]
 gi|167654154|gb|EDR98283.1| hypothetical protein ANACAC_01908 [Anaerostipes caccae DSM 14662]
          Length = 225

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 88/191 (46%), Positives = 113/191 (59%), Gaps = 4/191 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F  E          + GIDEVGRG  AGPVV AA+IL  +     +NDSKK+S KKRE L
Sbjct: 33  FSYEREYER--YSHICGIDEVGRGPFAGPVVAAAVILPRDCDILYLNDSKKVSPKKREAL 90

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y++I   A+ + I  AS + ID+ NI  AT +A+  AV NL V P   L D  +IP  + 
Sbjct: 91  YDEIYEKALAVGIGMASEKVIDEINILNATYEAMRTAVSNLPVKPDLLLNDAVTIP-GIG 149

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            +   +IKGD+ S SIAAASI+AKVTRDR+M    + YP Y F  + GY T  H + IKE
Sbjct: 150 TEQVPIIKGDAKSASIAAASIVAKVTRDRMMEEYDQLYPQYQFAKNKGYGTKAHIEAIKE 209

Query: 191 KGPSCIHRLTF 201
            G   +HR +F
Sbjct: 210 YGICTLHRKSF 220


>gi|170727606|ref|YP_001761632.1| ribonuclease HII [Shewanella woodyi ATCC 51908]
 gi|238688705|sp|B1KNS9|RNH2_SHEWM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|169812953|gb|ACA87537.1| Ribonuclease H [Shewanella woodyi ATCC 51908]
          Length = 213

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 87/188 (46%), Positives = 116/188 (61%), Gaps = 8/188 (4%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DEVGRG L G VV AA+ILDPNN   G+NDSKK++ KKRE L+ +I   A+ I++  
Sbjct: 21  AGVDEVGRGPLVGNVVTAAVILDPNNPITGLNDSKKLTEKKRELLFAEIHEKALCINVGH 80

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL-------PCQAFAVIK 138
           A+   ID+ NI  AT+ A+  AV  L + P S L+DG   P            +A AV+K
Sbjct: 81  ATPDEIDELNILHATMLAMQRAVAGLDIKPLSVLVDGNRTPAFYHGEETEDRIEAHAVVK 140

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD +  +I+AASIIAKV RDR M +   +YP YGF  H GYPT  H + ++  G    HR
Sbjct: 141 GDGLISAISAASIIAKVIRDREMDLLDMEYPQYGFAKHKGYPTKAHFEALELHGVLPEHR 200

Query: 199 LTFRPLRN 206
            +FRP++ 
Sbjct: 201 KSFRPVKE 208


>gi|311694071|gb|ADP96944.1| ribonuclease HII [marine bacterium HP15]
          Length = 228

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 80/184 (43%), Positives = 113/184 (61%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG L G VV AA+ILDP+    G+ DSKK++ K+R  LY++I   A   SI
Sbjct: 17  LLAGVDEVGRGPLIGAVVTAAVILDPDRPIAGLADSKKLTEKRRNALYDQILEHAKAWSI 76

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
                  ID+ NI++AT+ A+  AV  L V+P   L+DG   P+     +  V+KGDS  
Sbjct: 77  GRCESHEIDRLNIYQATMLAMERAVSGLAVVPEYVLVDGNRCPK-WRWPSEPVVKGDSRV 135

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASIIAKVTRDR M     ++P +G   H GYPT  H + ++  G +  HR +FRP
Sbjct: 136 AAISAASIIAKVTRDREMEALEARFPGFGLAQHKGYPTPVHLEALRRLGATIEHRRSFRP 195

Query: 204 LRNL 207
           ++ +
Sbjct: 196 VQEV 199


>gi|260655674|ref|ZP_05861147.1| ribonuclease HII [Jonquetella anthropi E3_33 E1]
 gi|260629591|gb|EEX47785.1| ribonuclease HII [Jonquetella anthropi E3_33 E1]
          Length = 195

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 75/183 (40%), Positives = 106/183 (57%), Gaps = 5/183 (2%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS-S 78
             +AG+DE GRG LAGPV+ AA+IL P         G+ DSKK+S KKRE+L+  +    
Sbjct: 1   MILAGVDEAGRGPLAGPVMAAAVILSPEQKNVLVQSGLRDSKKLSAKKREKLFGLMQELG 60

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
            +  + +AS + ID+ NI +ATL A+  AV  L   P    +DG      +     A++ 
Sbjct: 61  VVWRLQAASRRRIDRMNILQATLWAMARAVNRLPATPDGVAVDGSQEIPGISLYQQAIVG 120

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD +   I+AAS++AKV RDRLM    + YP YG   H GY TA+HQ+ +   GP+ +HR
Sbjct: 121 GDDLYPEISAASVVAKVVRDRLMTALDRLYPGYGLAQHKGYGTAQHQEALLRLGPTPLHR 180

Query: 199 LTF 201
            +F
Sbjct: 181 RSF 183


>gi|210622543|ref|ZP_03293236.1| hypothetical protein CLOHIR_01184 [Clostridium hiranonis DSM 13275]
 gi|210154178|gb|EEA85184.1| hypothetical protein CLOHIR_01184 [Clostridium hiranonis DSM 13275]
          Length = 256

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 88/196 (44%), Positives = 118/196 (60%), Gaps = 4/196 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E    EK    +AG+DE GRG LAGPVV A ++L       GINDSKK+S  KR EL+
Sbjct: 62  AYENEGYEKGYTYIAGVDEAGRGPLAGPVVAAVVVLKQGTKIPGINDSKKLSEDKRNELF 121

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           + I   A+   I    ++ ID++NI  AT  A+  A+  L+  P   L D   IP D+  
Sbjct: 122 DIIKEEALDYGIGIVGNEEIDEYNILNATYMAMRKALNCLKKQPDYILADAVHIP-DVDI 180

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +  ++IKGD+ S+SIAAASI+AKVTRD LM    + YP+YGF  H GY TA+H + I E 
Sbjct: 181 EQNSIIKGDAKSISIAAASILAKVTRDSLMYQYDEIYPEYGFAHHKGYGTAEHYKAIDEN 240

Query: 192 GPSCIHRLTFRPLRNL 207
           G + IHR +F  L+N+
Sbjct: 241 GITPIHRKSF--LKNV 254


>gi|302389636|ref|YP_003825457.1| RNase HII [Thermosediminibacter oceani DSM 16646]
 gi|302200264|gb|ADL07834.1| RNase HII [Thermosediminibacter oceani DSM 16646]
          Length = 237

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 90/192 (46%), Positives = 120/192 (62%), Gaps = 2/192 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F  E ++ E+    +AG+DE GRG LAGPVV AA+IL  +     +NDSK +S K+RE +
Sbjct: 38  FARERLLSERGYRYIAGVDEAGRGPLAGPVVAAAVILPLDVFILKLNDSKLLSEKQREAV 97

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           YE+I   A+ ++ S    +YID+HNI  ATL A+  AV+ L V P   L+D   IP  L 
Sbjct: 98  YEEIKQKAVAVNFSVVDEKYIDEHNILNATLHAMQKAVQGLSVKPDIVLVDALKIP-GLD 156

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            Q   +I GD +  SIAAASIIAKV RDR+M+  H+ YP Y F ++ GY T KH + IK+
Sbjct: 157 VQQENIIHGDRLCASIAAASIIAKVERDRIMKNYHELYPHYDFCNNKGYCTKKHVESIKK 216

Query: 191 KGPSCIHRLTFR 202
            G S IHR +F 
Sbjct: 217 YGLSPIHRRSFS 228


>gi|110004283|emb|CAK98621.1| putative ribonuclease h II protein [Spiroplasma citri]
          Length = 207

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 81/196 (41%), Positives = 117/196 (59%), Gaps = 3/196 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           FE E ++   N   +AG DE GRG LAGP+VV+A+IL  + +   I DSKKI+ K+R +L
Sbjct: 4   FEKEILISYPNTTILAGTDEAGRGCLAGPLVVSAVILPLDYVNDEIKDSKKITAKQRIKL 63

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            ++I S AI  +I   S    ++ N  +A++  +  A++NL V     L D   +     
Sbjct: 64  ADEIMSIAISYTIEIISVAMFEELNPKQASIFGMQQAIDNLMVKSDIILTDAEKLGPSYN 123

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            Q  A+IKGDS+S SI AASI+AKVTRD LM    + YP Y F ++ GY T KH   +++
Sbjct: 124 HQ--AIIKGDSLSQSIVAASILAKVTRDNLMLKFDQDYPQYDFKNNKGYGTKKHLLALQQ 181

Query: 191 KGPSCIHRLTFRPLRN 206
            G + +HR T+RP+R 
Sbjct: 182 FGITSLHRKTYRPVRE 197


>gi|302670910|ref|YP_003830870.1| ribonuclease HII RnhB [Butyrivibrio proteoclasticus B316]
 gi|302395383|gb|ADL34288.1| ribonuclease HII RnhB [Butyrivibrio proteoclasticus B316]
          Length = 253

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 94/195 (48%), Positives = 127/195 (65%), Gaps = 5/195 (2%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E   +E E       +  + GIDEVGRG LAGPV  AA+IL  ++  + +NDSKK+S KK
Sbjct: 58  EMKKYERENA----GLGLLCGIDEVGRGPLAGPVYAAAVILPTDSEIYYLNDSKKLSEKK 113

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           REELY+ I   AI + I  ++ + ID+ NI +AT +A+  AV +L V P   LID   IP
Sbjct: 114 REELYDVIMDKAISVGIGYSTCERIDEINILQATYEAMTKAVNSLSVKPGGLLIDAVHIP 173

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           +    +  ++IKGD+ S SIAAASIIAKVTRDR+M+   K+YP+YGFDS+ GY +A H  
Sbjct: 174 QLEEYKQISIIKGDAKSASIAAASIIAKVTRDRIMKDYAKEYPEYGFDSNKGYGSADHIA 233

Query: 187 VIKEKGPSCIHRLTF 201
            +K+ GP  IHR +F
Sbjct: 234 ALKKYGPCPIHRRSF 248


>gi|320527486|ref|ZP_08028667.1| ribonuclease HII [Solobacterium moorei F0204]
 gi|320132199|gb|EFW24748.1| ribonuclease HII [Solobacterium moorei F0204]
          Length = 208

 Score =  231 bits (589), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 8/193 (4%)

Query: 19  REKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
            E   WP    + GIDE GRG LAGP+ VA ++         I DSK IS KKR+ L+E+
Sbjct: 11  YEHQYWPLEKLIIGIDEAGRGPLAGPLTVAGVVFPIGYENPDIYDSKSISEKKRDALFEQ 70

Query: 75  ITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   A+   I   S + IDK+NI++A   A+      +       L D   +  +   + 
Sbjct: 71  IQEDALWFEIIQVSPEDIDKYNIYRADQLAMEQI--AIHSDAEIVLTDAMPLIIE-GKEI 127

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             ++KGD  S+SIAAASI+AKVTRDR+M    K+YP+YGF  H GYPT +H + +   G 
Sbjct: 128 IPLVKGDQKSISIAAASILAKVTRDRVMLEYDKEYPEYGFAKHKGYPTKQHMEALHTYGV 187

Query: 194 SCIHRLTFRPLRN 206
           + IHR +F P+R 
Sbjct: 188 TKIHRKSFGPVRE 200


>gi|291459085|ref|ZP_06598475.1| ribonuclease HII [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418339|gb|EFE92058.1| ribonuclease HII [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 247

 Score =  231 bits (589), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 78/191 (40%), Positives = 113/191 (59%), Gaps = 8/191 (4%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
           N+  + G+DE GRG LAGPVV A  +L  + +   ++DSKK+S K+RE L+ +IT  A+ 
Sbjct: 34  NLSLIGGVDEAGRGPLAGPVVAACCVLPKDALILYLDDSKKLSEKRRELLFPEITKKALA 93

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVEN----LQVIPRSALIDGRSIPEDLPCQAFAV 136
             +     + ID+ NI  A+ +A+  ++ +    L   P   L D  +IP  +      +
Sbjct: 94  FGVGIVGEKRIDEINILNASYEAMRLSILSVSSKLGRPPELLLNDAVTIP-GIEIPQLPI 152

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           I+GDS SLSIAAAS+IAKV RDRLM    +++P YGF  H GY TA H++ I  KG   I
Sbjct: 153 IRGDSKSLSIAAASVIAKVIRDRLMLRYDREFPGYGFARHKGYGTALHREKILSKGLCRI 212

Query: 197 HRLTFRPLRNL 207
           HR +F  ++ L
Sbjct: 213 HRRSF--VKKL 221


>gi|45644754|gb|AAS73142.1| predicted ribonuclease H [uncultured marine gamma proteobacterium
           EBAC20E09]
          Length = 180

 Score =  231 bits (589), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 82/179 (45%), Positives = 103/179 (57%), Gaps = 3/179 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           +AG DEVGRG LAGPVV AA+IL  +    G+ DSKKIS KKRE L + I   +  +   
Sbjct: 2   IAGTDEVGRGCLAGPVVAAAVILKED--IPGLTDSKKISPKKREFLADLILEKSFFAYGV 59

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S+  IDK NI  A+L A+  A+ NL V P   L+DG +   DL     A+I GDS   +
Sbjct: 60  VSNNKIDKINILNASLLAMKRAILNLPVRPSMVLVDG-TFKPDLDIPMRAIIGGDSSENA 118

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           I+AASIIAKV RD LM      +P Y    + GY T KH + +K  G   IHR TF  +
Sbjct: 119 ISAASIIAKVYRDNLMIKYDSIFPVYDLKGNKGYGTKKHLEALKSFGHCEIHRTTFNGV 177


>gi|15606955|ref|NP_214337.1| RNase HII [Aquifex aeolicus VF5]
 gi|7227919|sp|O67768|RNH2_AQUAE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|2984206|gb|AAC07736.1| RNase HII [Aquifex aeolicus VF5]
          Length = 196

 Score =  231 bits (589), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 80/196 (40%), Positives = 117/196 (59%), Gaps = 5/196 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + EK +  VAG+DE GRG LAGPVV AA+IL P   PF   DSKK++ K+REE 
Sbjct: 2   LNYELELWEKGL-LVAGVDEAGRGPLAGPVVAAAVILPPFTEPFIKGDSKKLTKKEREEA 60

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           YE+I + A+ +  +      ID+ NI +AT  A+  A+++L+      + D   +  +  
Sbjct: 61  YEEIKNKALAVGTAVVDSAVIDRVNILRATKLAMKRALKDLKYHYDIVITDYVKLEGE-- 118

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                ++KGD  SL+ A ASIIAKV RD++M I HK YPD+ F S+ GYP+  H + +++
Sbjct: 119 -NCMPLVKGDEKSLNCACASIIAKVIRDKIMEIYHKIYPDFNFASNKGYPSKTHLEKVEK 177

Query: 191 KGPSCIHRLTFRPLRN 206
              + IHR +F PL+ 
Sbjct: 178 GEYTEIHRKSFSPLKK 193


>gi|119485462|ref|ZP_01619790.1| ribonuclease HII [Lyngbya sp. PCC 8106]
 gi|119457218|gb|EAW38344.1| ribonuclease HII [Lyngbya sp. PCC 8106]
          Length = 199

 Score =  231 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 81/187 (43%), Positives = 109/187 (58%), Gaps = 5/187 (2%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79
             +AGIDEVGRGAL GPVV  A+IL    I      G+ DSK++    R+ L ++I + A
Sbjct: 3   QLIAGIDEVGRGALFGPVVAGAVILSDEAITALTAAGVRDSKQLRPPMRKRLAQEIRAMA 62

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           +   ++ AS Q ID+ NI +ATL A+  ++  L+  P   LIDG     DL      VIK
Sbjct: 63  LSCQVAVASVQEIDRLNILQATLLAMKRSILKLKPPPDLCLIDGNQPIRDLLIPQQTVIK 122

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD  S  IAAASI+AKV RD L+     KY +Y   ++ GY T KH+Q ++  GPS  HR
Sbjct: 123 GDQTSTVIAAASIVAKVWRDELIVRLADKYREYDLSNNKGYGTKKHRQALQRYGPSRQHR 182

Query: 199 LTFRPLR 205
           L+F P +
Sbjct: 183 LSFAPCQ 189


>gi|297626589|ref|YP_003688352.1| ribonuclease HII [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922354|emb|CBL56926.1| Ribonuclease HII [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 211

 Score =  231 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 75/196 (38%), Positives = 113/196 (57%), Gaps = 4/196 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREEL 71
            E  +      PVAG DE GRGA AGP+V AA+IL  DP +    ++DSK ++ ++RE  
Sbjct: 10  YEQALAASGFGPVAGADEAGRGACAGPLVAAAVILSEDPQDHIEDLHDSKTLTARRRERA 69

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +++I + A+  S+        D+  + +A L  +  A+  L   P  AL DG ++   LP
Sbjct: 70  FDQIKAHALSWSVVCVGPAECDRLGMQEADLQGLRRALLRLDPSPGFALTDGFAV-AGLP 128

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                + KGD +   ++AASI+AKVTRDRLM  A +++P YGF+ H GY T  HQ+ ++ 
Sbjct: 129 VPGLGMWKGDRVCACVSAASIVAKVTRDRLMVRAAQQFPVYGFEIHKGYATKLHQERLEA 188

Query: 191 KGPSCIHRLTFRPLRN 206
            GPS IHR ++  +R 
Sbjct: 189 LGPSAIHRRSYANVRR 204


>gi|17231824|ref|NP_488372.1| ribonuclease HII [Nostoc sp. PCC 7120]
 gi|39932442|sp|Q8YP68|RNH2_ANASP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|17133468|dbj|BAB76031.1| ribonuclease HII [Nostoc sp. PCC 7120]
          Length = 225

 Score =  231 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 83/187 (44%), Positives = 116/187 (62%), Gaps = 5/187 (2%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
             VAG+DEVGRGAL GPVV A++IL  +  P      I DSKK+SH +R +L ++I++ A
Sbjct: 35  GLVAGVDEVGRGALFGPVVAASVILPASAFPHLMTAEIKDSKKLSHSRRVQLAQQISTLA 94

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           I   I  A+   ID+ NI +ATL A+  +V+ L++ P   LIDG    +DL      ++K
Sbjct: 95  IDWRIGYATTAEIDRINILQATLLAMKRSVKKLKLQPILCLIDGNQPVQDLLMLQQTIVK 154

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD  SL+IAAASI+AKV RD L++    KYP Y   S+ GY + KH   + + G S +HR
Sbjct: 155 GDERSLNIAAASIMAKVWRDDLIQRLATKYPMYDLKSNKGYGSKKHLLALAQHGASPLHR 214

Query: 199 LTFRPLR 205
            +FRP +
Sbjct: 215 QSFRPCQ 221


>gi|29840412|ref|NP_829518.1| ribonuclease HII [Chlamydophila caviae GPIC]
 gi|33301616|sp|Q822M7|RNH2_CHLCV RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|29834761|gb|AAP05396.1| ribonuclease HII [Chlamydophila caviae GPIC]
          Length = 212

 Score =  230 bits (588), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 90/196 (45%), Positives = 120/196 (61%), Gaps = 4/196 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  V  +    +AG+DEVGRG LAGPVV  A IL    I  G+NDSKK++ K+R ++ +
Sbjct: 18  FEEEVYGEGFSIIAGVDEVGRGPLAGPVVAGACILPRGKIFAGVNDSKKLTPKERGKIRD 77

Query: 74  KITSS--AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            + +       I   S + ID+ NI +AT +A+  A+ NL V P   LIDG  +P  +PC
Sbjct: 78  ILLNDPDVCYGIGVVSVERIDEINILEATKEAMAKAIANLSVHPDFLLIDGLHLPHKIPC 137

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   +IKGDS S SIAAASIIAK  RD LMR  H++YP+YGFD H GY TA H   ++  
Sbjct: 138 K--KIIKGDSKSASIAAASIIAKEYRDDLMRELHQRYPNYGFDKHKGYGTAAHLAALRAF 195

Query: 192 GPSCIHRLTFRPLRNL 207
           GP   HR +F P+R +
Sbjct: 196 GPCDCHRKSFAPIRQV 211


>gi|326204815|ref|ZP_08194669.1| Ribonuclease H [Clostridium papyrosolvens DSM 2782]
 gi|325985027|gb|EGD45869.1| Ribonuclease H [Clostridium papyrosolvens DSM 2782]
          Length = 255

 Score =  230 bits (588), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 87/195 (44%), Positives = 120/195 (61%), Gaps = 4/195 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E     +    +AG+DE GRG LAGPVV AA++L       G+NDSKK+S  +RE+L++
Sbjct: 62  FERQAISEGFDYIAGVDEAGRGPLAGPVVAAAVVLPKGLTIEGVNDSKKLSEAQREKLFD 121

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   A+   IS    +YID+ NI  AT  A+  A+  L  I    L+D  S+ +++  +
Sbjct: 122 EIKEKALSYGISVVDEKYIDEVNILNATKMAMTEALNRLDPIADCILLDAVSL-DNISTK 180

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              +IKGDS+SLSIAAASI+AKVTRDRL+     KYP YGF +H GY T +H   IK+ G
Sbjct: 181 QVPIIKGDSLSLSIAAASILAKVTRDRLLMEYDAKYPQYGFAAHKGYGTPQHISAIKKFG 240

Query: 193 PSCIHRLTFRPLRNL 207
              IHRL+F  ++N 
Sbjct: 241 LCPIHRLSF--VKNF 253


>gi|303241143|ref|ZP_07327651.1| Ribonuclease H [Acetivibrio cellulolyticus CD2]
 gi|302591270|gb|EFL61010.1| Ribonuclease H [Acetivibrio cellulolyticus CD2]
          Length = 260

 Score =  230 bits (588), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 93/190 (48%), Positives = 114/190 (60%), Gaps = 2/190 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E          +AGIDE GRG LAGPVV AA+IL  N    G+NDSKK+S K+REELY
Sbjct: 66  RFEKEAYVMGAKFIAGIDEAGRGPLAGPVVAAAVILPENVFINGLNDSKKLSEKQREELY 125

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             IT  AI   +     + ID+ NI  AT  A+  AVE L+V P   LID   + + L  
Sbjct: 126 SIITEKAIAYDVGIVDEKVIDELNILNATKMAMEIAVEGLKVKPDILLIDAVKL-DSLKI 184

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +  ++IKGD++S+SIAAASIIAKVTRDR +      YPDYGF  H GY T +H   IK+ 
Sbjct: 185 KQESIIKGDALSISIAAASIIAKVTRDRYIDQMDSVYPDYGFRKHKGYGTKEHIDAIKKF 244

Query: 192 GPSCIHRLTF 201
           G   IHR TF
Sbjct: 245 GICPIHRTTF 254


>gi|323339885|ref|ZP_08080154.1| ribonuclease HII [Lactobacillus ruminis ATCC 25644]
 gi|323092758|gb|EFZ35361.1| ribonuclease HII [Lactobacillus ruminis ATCC 25644]
          Length = 256

 Score =  230 bits (588), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 83/197 (42%), Positives = 120/197 (60%), Gaps = 3/197 (1%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
             +LE       +  V GIDEVGRG LAGPV+   +IL  +     +NDSK+++ +KRE+
Sbjct: 58  RLKLERAYWNFGIENVGGIDEVGRGPLAGPVIACCVILPHDFDLIDVNDSKQLTAEKREK 117

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY  I   AI + I    ++ ID+ NI++A   A+  AVE+L++ P   LID   I  D+
Sbjct: 118 LYGLILERAIDVGIGCVDNRMIDRINIYEAARVAMKQAVESLRIKPEQLLIDAMQIETDI 177

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     +IKGD+ S SI+AASI+AKV RD LM+   + YP YGF  + GY T +H   ++
Sbjct: 178 P--QKKLIKGDAKSASISAASIVAKVNRDHLMQFYDRIYPGYGFSKNDGYGTKEHLAGLE 235

Query: 190 EKGPSCIHRLTFRPLRN 206
           + GP  IHR+TF P+++
Sbjct: 236 KLGPCPIHRMTFEPIKS 252


>gi|300776110|ref|ZP_07085969.1| ribonuclease H [Chryseobacterium gleum ATCC 35910]
 gi|300505243|gb|EFK36382.1| ribonuclease H [Chryseobacterium gleum ATCC 35910]
          Length = 194

 Score =  230 bits (588), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 80/190 (42%), Positives = 117/190 (61%), Gaps = 1/190 (0%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
           +E +    N++  AG DEVGRG L+GPVV AA+ILD       +NDSKK++ K R EL  
Sbjct: 1   MELIKNWSNLYIEAGCDEVGRGCLSGPVVAAAVILDEGFEQNLVNDSKKLTFKTRMELDS 60

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I  +    +I+     +ID+HNI  A++ A++ A++ L + P   L+DG          
Sbjct: 61  YIKDNVKNYAIAELPASFIDEHNILNASIHAMHRALDKLTITPELILVDGNKFHPYNYIP 120

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              +IKGDS  LSIAAASI+AK  RD+LM   H+++P+YG+D++ GY T KHQ+ + + G
Sbjct: 121 HQCIIKGDSKVLSIAAASILAKNYRDKLMMQLHEEHPEYGWDTNFGYATKKHQEALIKHG 180

Query: 193 PSCIHRLTFR 202
           P+  HR +FR
Sbjct: 181 PTIYHRQSFR 190


>gi|162447204|ref|YP_001620336.1| ribonuclease HII [Acholeplasma laidlawii PG-8A]
 gi|189043526|sp|A9NF30|RNH2_ACHLI RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|161985311|gb|ABX80960.1| ribonuclease HII [Acholeplasma laidlawii PG-8A]
          Length = 202

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 87/198 (43%), Positives = 115/198 (58%), Gaps = 4/198 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           +   E  + +K    + G+DE GRG LAGPVV AA+I +       INDSK +S KKRE 
Sbjct: 5   NLAFEKALYDKGYTYICGVDEAGRGPLAGPVVAAAVIFEKGFYHEDINDSKTLSAKKRET 64

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L+E I   A+ I +S  +H+ IDK NI +A   A+  A+  L++ P+ AL D   I    
Sbjct: 65  LFELIKQHALAIGVSVVNHEVIDKINILEAARHAMEDAISKLKIKPQYALTDHMDIK--- 121

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                ++  GD +S+SIAAASIIAKVTRD+LM    + YP YGF  H GY T KH + + 
Sbjct: 122 GIPYTSIKHGDQLSISIAAASIIAKVTRDKLMVDYDEVYPQYGFKDHKGYGTRKHLEALN 181

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G S IHR TF P+  L
Sbjct: 182 LYGVSPIHRKTFAPVAKL 199


>gi|294781869|ref|ZP_06747201.1| ribonuclease HII [Fusobacterium sp. 1_1_41FAA]
 gi|294481680|gb|EFG29449.1| ribonuclease HII [Fusobacterium sp. 1_1_41FAA]
          Length = 217

 Score =  230 bits (587), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 85/191 (44%), Positives = 118/191 (61%), Gaps = 7/191 (3%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKIT 76
           + +     V G+DE GRG LAGPVV AA+IL   +     INDSKK++ KKRE+LY+ I 
Sbjct: 7   LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKQYSEELDEINDSKKLTEKKREKLYDIIL 66

Query: 77  SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPC 131
           ++  +++  AS + IDK NI  A   A+  A+++L+    +      L+DG    ++   
Sbjct: 67  NNFNVAVGIASVEEIDKLNILNADFLAMRRALKDLEKFYETKKDYIVLVDGNLKIKEYEG 126

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           + F ++KGD+ SLSIAAASIIAKVTRDR+M+    KYPDY F+ + GY T KH + IK K
Sbjct: 127 KQFPIVKGDAKSLSIAAASIIAKVTRDRIMKDLGLKYPDYDFEKNKGYGTKKHVEAIKTK 186

Query: 192 GPSC-IHRLTF 201
           G    IHR  F
Sbjct: 187 GVLKNIHRKVF 197


>gi|300771702|ref|ZP_07081577.1| ribonuclease H [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761691|gb|EFK58512.1| ribonuclease H [Sphingobacterium spiritivorum ATCC 33861]
          Length = 198

 Score =  230 bits (587), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 74/177 (41%), Positives = 98/177 (55%), Gaps = 1/177 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+I   +     +NDSKK+S KKR  L   I   A+  +++S
Sbjct: 13  AGCDEAGRGCLAGPVFAAAVIFPKDYHHDLLNDSKKLSEKKRMALRPIIEQEALAFAVAS 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + IDK NIH A+  A++ A++ LQV     ++DG             +IKGD   LS
Sbjct: 73  VSAEEIDKINIHNASYLAMHRALDQLQVKAEYIIVDGNRFIPYPEVSHTCIIKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           IAAASI+AK  RD  M      +P Y +  + GYPT KH+  +   G +  HR TFR
Sbjct: 133 IAAASILAKTYRDEYMESIACDFPAYDWLQNKGYPTVKHRNAVLAYGLTPHHRKTFR 189


>gi|317473605|ref|ZP_07932894.1| ribonuclease HII [Anaerostipes sp. 3_2_56FAA]
 gi|316898895|gb|EFV20920.1| ribonuclease HII [Anaerostipes sp. 3_2_56FAA]
          Length = 225

 Score =  230 bits (587), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 90/191 (47%), Positives = 113/191 (59%), Gaps = 4/191 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F  E          + GIDEVGRG  AGPVV AA+IL  +     +NDSKKIS KKRE L
Sbjct: 33  FSYEREYER--YSHICGIDEVGRGPFAGPVVAAAVILPRDCDILYLNDSKKISPKKREAL 90

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+KI   A+ + I  AS + ID+ NI  AT +A+  AV NL V P   L D  +IP  + 
Sbjct: 91  YDKIYEKALAVGIGMASEKVIDEINILNATYEAMRTAVSNLPVEPDLLLNDAVTIP-GIG 149

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            +   +IKGD+ S SIAAASI+AKVTRDR+M    + YP Y F  + GY T  H + IKE
Sbjct: 150 TEQVPIIKGDAKSASIAAASIVAKVTRDRMMEEYDQLYPQYQFAKNKGYGTKAHIEAIKE 209

Query: 191 KGPSCIHRLTF 201
            G   +HR +F
Sbjct: 210 YGICTLHRKSF 220


>gi|254797053|ref|YP_003081891.1| ribonuclease HII [Neorickettsia risticii str. Illinois]
 gi|254590300|gb|ACT69662.1| ribonuclease HII [Neorickettsia risticii str. Illinois]
          Length = 195

 Score =  230 bits (587), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 78/194 (40%), Positives = 110/194 (56%), Gaps = 4/194 (2%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77
            R+     +AG+DEVGRG LAGPVV  A+IL  N    G  DSK +S   R   YEKI S
Sbjct: 3   YRKSENGLIAGVDEVGRGCLAGPVVACAVILTENLAIPG--DSKVLSPAARLSWYEKIMS 60

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC--QAFA 135
           ++  +I  ++ + I+  NI  ATL A+  A+E L V+P + LIDGR I  +     +  +
Sbjct: 61  NSYNAIGMSTVKEIETMNILNATLLAMERALERLPVVPTTVLIDGRDIINNAAKYKEVKS 120

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           V+ GD I   I AASI+AKVTRDR M      YP Y +  + GY T +H + + + G + 
Sbjct: 121 VVSGDKIYEEIKAASIVAKVTRDRWMEELDLTYPYYRWRFNKGYGTKEHLEALAKYGVTD 180

Query: 196 IHRLTFRPLRNLSV 209
            HR  F P++ + +
Sbjct: 181 HHRRKFAPVKRMLL 194


>gi|323135966|ref|ZP_08071049.1| Ribonuclease H [Methylocystis sp. ATCC 49242]
 gi|322399057|gb|EFY01576.1| Ribonuclease H [Methylocystis sp. ATCC 49242]
          Length = 204

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 94/198 (47%), Positives = 133/198 (67%), Gaps = 2/198 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F LE  +R + +WPVAG+DEVGRG LAGPV  AA+ILDP  +P G+NDSK +  ++RE
Sbjct: 6   PDFRLEGRLRRQGVWPVAGVDEVGRGPLAGPVAAAAVILDPARLPLGVNDSKALGPRERE 65

Query: 70  ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
             +E+I S+A  +S++  +   ID  NI +A+L A+  AV  L + P   L+DGR  P  
Sbjct: 66  AAFERILSTAQAVSVAFVTPPEIDAMNIRQASLAAMARAVAGLSLAPAFVLVDGRD-PPP 124

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L C   A++KGD+++LSIAAASI+AKV RD +MR     YPDYGF+++ GY   +H   +
Sbjct: 125 LACHCRAIVKGDALALSIAAASIVAKVARDGMMRRLAAAYPDYGFETNAGYGARRHLDAL 184

Query: 189 KEKGPSCIHRLTFRPLRN 206
           +  GP+ +HR +F PLR+
Sbjct: 185 ERIGPTPVHRFSFAPLRD 202


>gi|329121228|ref|ZP_08249855.1| ribonuclease HII [Dialister micraerophilus DSM 19965]
 gi|327470162|gb|EGF15625.1| ribonuclease HII [Dialister micraerophilus DSM 19965]
          Length = 264

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 84/199 (42%), Positives = 128/199 (64%), Gaps = 3/199 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           + +E+   ++ +  V GIDEVGRG LAGPV VAA+IL P+     +NDSKK+S +KRE +
Sbjct: 56  YAVESEFYKQGIQYVVGIDEVGRGPLAGPVTVAAVILKPHWFIENLNDSKKVSKEKREII 115

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            +K+   A+ ISI+  S + ID  NI++AT+ A+Y AV+ L++ P++ ++D    P    
Sbjct: 116 SKKVHEEALAISITDLSVEEIDTLNIYQATMLAMYQAVKKLEIKPQAVIVDAM--PLHFQ 173

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++I GDS S S+AAASI+AKV RD +M    K YP Y F+ + GY T KH + I E
Sbjct: 174 VPCKSLIHGDSKSASVAAASIVAKVHRDHIMDEYAKIYPGYDFEDNKGYGTKKHMEAIYE 233

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            G + IHR ++ P++++ +
Sbjct: 234 LGITPIHRKSYEPVKSIVL 252


>gi|294625960|ref|ZP_06704572.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|294666389|ref|ZP_06731635.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292599755|gb|EFF43880.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292603831|gb|EFF47236.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 248

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 83/200 (41%), Positives = 125/200 (62%), Gaps = 2/200 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHK 66
           + P F+   +   ++   +AG+DE GRG LAGPV VAA++ DP      G++DSK+++ +
Sbjct: 19  QSPLFDQSQIPNVESRRLIAGVDEAGRGPLAGPVAVAAVVFDPGKPRINGLDDSKQLTAE 78

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +RE+LY +I   A+  S+     + ID+ NI++AT+  +  AVE +  +   A IDG  +
Sbjct: 79  RREQLYARIVDRALAWSVVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRV 138

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P+ LPC A A+I GD++  +I AASI+AKVTRDRLM   H ++P+Y FD H GY T  H 
Sbjct: 139 PKGLPCPAEALIGGDALDRAIMAASIVAKVTRDRLMHELHARHPEYRFDQHKGYSTPVHL 198

Query: 186 QVIKEKGPSCIHRLTFRPLR 205
             ++  GP   HR +F P+R
Sbjct: 199 AALQTHGPCPQHRRSFAPVR 218


>gi|282883154|ref|ZP_06291753.1| ribonuclease HII [Peptoniphilus lacrimalis 315-B]
 gi|281296966|gb|EFA89463.1| ribonuclease HII [Peptoniphilus lacrimalis 315-B]
          Length = 205

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 84/196 (42%), Positives = 114/196 (58%), Gaps = 9/196 (4%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E   R+K    +AGIDEVGRG+L G V+  AII+  ++   G+NDSKK++ KKR+ELY
Sbjct: 5   AYEKDYRKKGSKLIAGIDEVGRGSLFGDVLSCAIIMKEDSNIEGVNDSKKLTAKKRKELY 64

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALIDGRSI 125
            KI   ++ + I  A  + IDK NI  AT  ++  A+ENL+      V+P   LID  +I
Sbjct: 65  NKILEDSLAVGIGRADAKTIDKLNIKMATHLSMVRAIENLRDSQGNLVVPDLVLIDAENI 124

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
              +     ++IKGD    SIA ASIIAKV RD L       YP YG + H GY T  H+
Sbjct: 125 ETTIF--QHSIIKGDENCYSIACASIIAKVYRDSLCDKWATIYPGYGIEKHKGYGTKFHR 182

Query: 186 QVIKEKGPSCIHRLTF 201
           + +K  GPS +HR +F
Sbjct: 183 EALKAYGPSPMHRKSF 198


>gi|146299683|ref|YP_001194274.1| ribonuclease HII [Flavobacterium johnsoniae UW101]
 gi|189043596|sp|A5FIL7|RNH2_FLAJO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|146154101|gb|ABQ04955.1| Ribonuclease H [Flavobacterium johnsoniae UW101]
          Length = 221

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 70/209 (33%), Positives = 102/209 (48%), Gaps = 21/209 (10%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76
            +         G DE GRG LAGPV  AA+IL        +NDSK++S K R  L   I 
Sbjct: 3   QLNYSGFTLETGTDEAGRGCLAGPVTAAAVILPSVFENNILNDSKQLSEKARALLKPIIE 62

Query: 77  SSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS----------- 124
             A+  S++      ID+ NI  A++  +   +  L+ IP   ++DG             
Sbjct: 63  EQALCFSVTHLFPDEIDEINILNASMKGMQECILKLKHIPEYIIVDGNRSLNAKLGLKNT 122

Query: 125 ---------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
                    I         ++IKGD+  LSIAAASI+AK  RD  M   H+++P Y +  
Sbjct: 123 FGKQFSKEEIELLKSIPNQSIIKGDAKFLSIAAASILAKTYRDEYMDQIHEEFPMYNWKQ 182

Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           + GYPT +H++ IK+ G +  HR++FR L
Sbjct: 183 NKGYPTKEHREAIKKYGTTKYHRMSFRLL 211


>gi|126666166|ref|ZP_01737146.1| ribonuclease HII [Marinobacter sp. ELB17]
 gi|126629488|gb|EBA00106.1| ribonuclease HII [Marinobacter sp. ELB17]
          Length = 217

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 81/183 (44%), Positives = 110/183 (60%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83
            +AG+DEVGRG L G VV AA+IL+P      + DSKK+S KKR +L+++I   A   S+
Sbjct: 18  LLAGVDEVGRGPLIGAVVTAAVILNPARPIKDLADSKKLSEKKRNQLFDEIIEKATAWSL 77

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
                + ID+ NI +AT+ A+  AVE L   P   L+DG   P D    A AV+KGD   
Sbjct: 78  GRCEAEEIDRLNIFQATMVAMTRAVEGLNPQPEYVLVDGNRCP-DWRWPAAAVVKGDMRI 136

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AKVTRDR ++   + YP YG   H GYPT  H + +   G +  HR +FRP
Sbjct: 137 AAISAASILAKVTRDRELQALDQLYPGYGLAQHKGYPTTAHMEALARLGVTPQHRRSFRP 196

Query: 204 LRN 206
           +R 
Sbjct: 197 VRE 199


>gi|304436821|ref|ZP_07396787.1| ribonuclease H [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370193|gb|EFM23852.1| ribonuclease H [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 259

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 89/197 (45%), Positives = 120/197 (60%), Gaps = 2/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +  E    E+    VAG+DE GRG LAGPV VAA+IL    +   ++DSKK+S K REEL
Sbjct: 52  YAYERCAAERGHCIVAGVDEAGRGPLAGPVAVAAVILPQEYLLLRLDDSKKLSEKVREEL 111

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           YE+I S A+   +     + ID+ NI +AT   +Y AV  L   P+  LID  ++P  L 
Sbjct: 112 YERIVSDAVSYHVELIDAETIDRMNILEATRKGMYDAVAALLPTPQEVLIDAVALPH-LR 170

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             + +++KGD+ S SIAAASI+AKVTRDRLM    + YP YGF  H GY T +H   I+ 
Sbjct: 171 MASQSIVKGDAKSASIAAASILAKVTRDRLMLTYDEAYPVYGFAKHKGYGTQEHIDAIRN 230

Query: 191 KGPSCIHRLTFRPLRNL 207
            G   +HR TF P+R++
Sbjct: 231 YGICPLHRKTFEPIRSM 247


>gi|330752106|emb|CBL87067.1| ribonuclease HII [uncultured Flavobacteria bacterium]
          Length = 194

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 70/179 (39%), Positives = 103/179 (57%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL  +     +NDSKK++ K+R  L   I   A+  +++ 
Sbjct: 12  AGTDEAGRGCLAGPVTAAAVILPADFNEPLLNDSKKLTEKQRFYLRPIIEKHAVAFAVAH 71

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            + + +D+ NI  A + A++ A++ L+  P   L+DG             +I+GD    +
Sbjct: 72  CTPKKVDEINILNAAIKAMHKAIQKLKPTPIHILVDGNRFHPFKKIPHQCIIRGDGKYQN 131

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD LM    KK+P Y + ++ GYPT KH++ I+  G +  HR TFR L
Sbjct: 132 IAAASILAKTYRDDLMLTLDKKHPKYDWKNNKGYPTKKHREAIRANGITSHHRKTFRLL 190


>gi|227535995|ref|ZP_03966044.1| ribonuclease H [Sphingobacterium spiritivorum ATCC 33300]
 gi|227244238|gb|EEI94253.1| ribonuclease H [Sphingobacterium spiritivorum ATCC 33300]
          Length = 198

 Score =  229 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 73/177 (41%), Positives = 98/177 (55%), Gaps = 1/177 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+I   +     +NDSKK+S KKR  L   I   A+  +++S
Sbjct: 13  AGCDEAGRGCLAGPVFAAAVIFPKDYHHDLLNDSKKLSEKKRMALRPIIEQEALAFAVAS 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + IDK NIH A+  A++ A++ L+V     ++DG             +IKGD   LS
Sbjct: 73  VSAEEIDKINIHNASYLAMHRALDQLKVKAEYIIVDGNRFIPYPEVSHTCIIKGDGKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           IAAASI+AK  RD  M      +P Y +  + GYPT KH+  +   G +  HR TFR
Sbjct: 133 IAAASILAKTYRDEYMESIACDFPAYDWLQNKGYPTVKHRNAVLAYGLTPHHRKTFR 189


>gi|261881041|ref|ZP_06007468.1| ribonuclease HII [Prevotella bergensis DSM 17361]
 gi|270332223|gb|EFA43009.1| ribonuclease HII [Prevotella bergensis DSM 17361]
          Length = 226

 Score =  229 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 102/206 (49%), Gaps = 23/206 (11%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL  +      NDSK++S KKR  L E+I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSVFAAAVILPKDYDNPDFNDSKQLSKKKRYALREQIIRDAVAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC-------------- 131
            +   ID+ NI  A+  A++ A++ L V P + +IDG       P               
Sbjct: 73  VTPAEIDRINILHASFLAMHRAIDQLAVRPEALIIDGNRFDPYKPLSENATEGRKERVVT 132

Query: 132 --------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
                       ++KGD    +IAAASI+AK  RD  M   H +YP Y ++S+ GYPT  
Sbjct: 133 RPDDPAVLPWQCIVKGDGKYQNIAAASILAKTFRDDYMDELHLQYPMYHWNSNKGYPTRI 192

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLSV 209
           H++ I   G +  HR ++  L N  +
Sbjct: 193 HREAIARYGITPFHRKSYNLLGNRQL 218


>gi|254499206|ref|ZP_05111886.1| RNase H ribonuclease [Legionella drancourtii LLAP12]
 gi|254351596|gb|EET10451.1| RNase H ribonuclease [Legionella drancourtii LLAP12]
          Length = 187

 Score =  229 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 82/184 (44%), Positives = 107/184 (58%), Gaps = 4/184 (2%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DEVGRG LAG VV AA+IL       G+ DSKK++ KKR+ L  +I   A+  + 
Sbjct: 6   LIAGVDEVGRGPLAGAVVTAAVILKE--PIEGLADSKKLTPKKRKLLSLQIQERALAFAY 63

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID  NIH+ATL A+  AVE L + P   L+DG   P  L     A+I+GDS+ 
Sbjct: 64  GRAEVDEIDALNIHQATLLAMRRAVEALPIKPDEVLVDGAHAPR-LAVPCRAIIQGDSLI 122

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKV RD  M      YP YGF  H GYPT  H++ +   GP  IHR ++ P
Sbjct: 123 PEISAASILAKVLRDEEMEALDAIYPGYGFAGHKGYPTVAHREALVHLGPCVIHRRSYAP 182

Query: 204 LRNL 207
           +  L
Sbjct: 183 VAAL 186


>gi|74316817|ref|YP_314557.1| RNase HII [Thiobacillus denitrificans ATCC 25259]
 gi|97189444|sp|Q3SKM7|RNH2_THIDA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|74056312|gb|AAZ96752.1| ribonuclease H [Thiobacillus denitrificans ATCC 25259]
          Length = 204

 Score =  229 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 80/183 (43%), Positives = 109/183 (59%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           + G+DE GRG LAGPVV AA++LDP     G+ DSKK++   RE L ++I + A+   ++
Sbjct: 16  LCGVDEAGRGPLAGPVVAAAVMLDPKRPIKGLRDSKKLTPAARERLADEIRARALAWCVA 75

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS   ID+ NI  AT+ A+  AV  +   P    +DG   PE    ++ AV++GD    
Sbjct: 76  EASVAEIDRLNILHATMLAMQRAVAGMSHAPDDVWVDGDRCPE-WTWRSQAVVQGDDKVA 134

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AK  RD LMR  H+ YP YGF  H+GY TA H   +K  G    HR +F P+
Sbjct: 135 AIAAASILAKTVRDELMRGLHEAYPLYGFAQHMGYATAAHLAALKANGACPHHRRSFAPV 194

Query: 205 RNL 207
           R L
Sbjct: 195 RLL 197


>gi|311748115|ref|ZP_07721900.1| ribonuclease HII [Algoriphagus sp. PR1]
 gi|126574759|gb|EAZ79140.1| ribonuclease HII [Algoriphagus sp. PR1]
          Length = 200

 Score =  229 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 85/185 (45%), Positives = 114/185 (61%), Gaps = 2/185 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DEVGRG LAGPVV AA+IL  +     INDSKK+  K+R++L E+I   ++   ++ 
Sbjct: 14  AGCDEVGRGCLAGPVVAAAVILPSDYSNEWINDSKKLGKKQRQDLIEEIKEKSLSWKVAE 73

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           AS + ID+ NI  A+  A+  A+E L+V P   LIDG      L      VIKGD    S
Sbjct: 74  ASVEEIDQINILNASFLAMSRAIEGLEVSPEHLLIDGNRFKSHLTLPFTCVIKGDGKFAS 133

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL- 204
           IAAASI+AKV RD LM     ++P YG++ +VGYPT  H++ I+E GP   HR +F+ L 
Sbjct: 134 IAAASILAKVYRDELMEKLALEHPHYGWERNVGYPTKAHREGIREHGPCIWHRKSFQLLP 193

Query: 205 RNLSV 209
           R L +
Sbjct: 194 RQLDL 198


>gi|62185237|ref|YP_220022.1| ribonuclease HII [Chlamydophila abortus S26/3]
 gi|73917604|sp|Q5L5M0|RNH2_CHLAB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|62148304|emb|CAH64071.1| ribonuclease HII [Chlamydophila abortus S26/3]
          Length = 212

 Score =  229 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 89/196 (45%), Positives = 119/196 (60%), Gaps = 4/196 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  V  +    +AGIDEVGRG LAGPVV  A IL    +  G+NDSKK++ K+R ++ +
Sbjct: 18  FEEEVFHEGFSLIAGIDEVGRGPLAGPVVAGACILPRGKVFAGVNDSKKLTPKERGKIRD 77

Query: 74  KIT--SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +   S     +   S + ID+ NI +AT +A+  A+ NL + P   L+DG  +P  +PC
Sbjct: 78  ILVNDSEVYYGLGVVSVERIDEINILEATKEAMAAAIANLPIHPDFLLVDGLHLPHKIPC 137

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   +IKGDS S SIAAASI+AK  RD LMR  H+ YPDYGFD H GY TA H   +K  
Sbjct: 138 K--KIIKGDSKSASIAAASILAKEYRDDLMRELHQLYPDYGFDKHKGYGTAAHLAALKAF 195

Query: 192 GPSCIHRLTFRPLRNL 207
           GP   HR +F P+R +
Sbjct: 196 GPCDCHRKSFAPVRQV 211


>gi|254448807|ref|ZP_05062264.1| ribonuclease HII [gamma proteobacterium HTCC5015]
 gi|198261648|gb|EDY85936.1| ribonuclease HII [gamma proteobacterium HTCC5015]
          Length = 202

 Score =  229 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 93/182 (51%), Positives = 119/182 (65%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84
           +AG DE GRG LAG VV AA++LDP     G+NDSKK+S K+RE LYE+I + A    I+
Sbjct: 17  IAGADEAGRGPLAGSVVAAAVVLDPKRPIPGLNDSKKLSEKRREALYEEICAEASDWCIA 76

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            AS + ID  NI  A++ A+  A+E LQ  P  ALIDG   P D+   A A++KGD    
Sbjct: 77  RASVEEIDDLNILHASMLAMKRAIEGLQHPPEQALIDGNRCP-DVSMPAQAIVKGDGRVA 135

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I AASI+AKV RDR M + H+ YPDYGFD H GYPTA HQ+ +K  GP+  HR +F P+
Sbjct: 136 CIGAASILAKVARDRDMLLLHEAYPDYGFDRHKGYPTALHQERLKALGPTEHHRRSFGPV 195

Query: 205 RN 206
           + 
Sbjct: 196 KK 197


>gi|325916627|ref|ZP_08178890.1| RNase HII [Xanthomonas vesicatoria ATCC 35937]
 gi|325537181|gb|EGD08914.1| RNase HII [Xanthomonas vesicatoria ATCC 35937]
          Length = 241

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 83/185 (44%), Positives = 120/185 (64%), Gaps = 2/185 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-I 81
             VAG+DE GRG LAGPV VAA++ DP+     G++DSK+++ ++RE+LY +I   A+  
Sbjct: 31  RLVAGVDEAGRGPLAGPVAVAAVVFDPSKPRINGLDDSKQLTAERREQLYARIVDRALAW 90

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           S+   + + ID+ NI++AT+  +  AVE +  +   A IDG  +P+ LPC A A+I GD+
Sbjct: 91  SVVLIASEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDA 150

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +  SI AASI+AKVTRDRLM   H ++P+Y FD H GY T  H   ++  GP   HR +F
Sbjct: 151 LDRSIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYATPVHLAALRSHGPCPQHRRSF 210

Query: 202 RPLRN 206
            P+R 
Sbjct: 211 APVRR 215


>gi|253682672|ref|ZP_04863469.1| ribonuclease HII (RNase HII) [Clostridium botulinum D str. 1873]
 gi|253562384|gb|EES91836.1| ribonuclease HII (RNase HII) [Clostridium botulinum D str. 1873]
          Length = 269

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 81/199 (40%), Positives = 112/199 (56%), Gaps = 8/199 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKI 63
           +  ++ ++     N   +AG DEVGRG LAGP+V AA+ILD      + +   INDSKKI
Sbjct: 65  KTMYQFDSQYISTN-GYLAGCDEVGRGPLAGPIVAAAVILDLEFANNDKLILKINDSKKI 123

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
             + REEL E I   AI   I+   +  ID   I     + +  +V  L+V P  AL DG
Sbjct: 124 KPELREELAEIIKEKAISYCIAEIDNLEIDNKGIAWCNNEVLQRSVNGLRVKPNLALSDG 183

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
             I ++       V+KGD+ S SIA ASIIAKV RD+LM+   + Y +Y FD ++GY T 
Sbjct: 184 YKI-KNCSIDNKFVVKGDAKSASIACASIIAKVHRDKLMQKYSEIYKEYAFDKNMGYGTK 242

Query: 183 KHQQVIKEKGPSCIHRLTF 201
           +H   IK+ G + IHR +F
Sbjct: 243 EHIDSIKKYGYTPIHRKSF 261


>gi|21242160|ref|NP_641742.1| ribonuclease HII [Xanthomonas axonopodis pv. citri str. 306]
 gi|39932428|sp|Q8PML9|RNH2_XANAC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|21107575|gb|AAM36278.1| ribonuclease HII [Xanthomonas axonopodis pv. citri str. 306]
          Length = 244

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 81/184 (44%), Positives = 118/184 (64%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-I 81
             +AG+DE GRG LAGPV VAA++ DP      G++DSK+++ ++RE+LY +I   A+  
Sbjct: 31  RLIAGVDEAGRGPLAGPVAVAAVVFDPGKPRINGLDDSKQLTAERREQLYARIVDRALAW 90

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           S+     + ID+ NI++AT+  +  AVE +  +   A IDG  +P+ LPC A A+I GD+
Sbjct: 91  SVVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDA 150

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +  +I AASI+AKVTRDRLM   H ++P+Y FD H GY T  H   ++  GP   HR +F
Sbjct: 151 LDRAIMAASIVAKVTRDRLMHELHTRHPEYRFDQHKGYSTPVHLAALQTHGPCPQHRRSF 210

Query: 202 RPLR 205
            P+R
Sbjct: 211 APVR 214


>gi|284047854|ref|YP_003398193.1| Ribonuclease H [Acidaminococcus fermentans DSM 20731]
 gi|283952075|gb|ADB46878.1| Ribonuclease H [Acidaminococcus fermentans DSM 20731]
          Length = 270

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 84/199 (42%), Positives = 126/199 (63%), Gaps = 4/199 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           +LE     + M  VAG DE GRG LAGP+V AA+IL  +    G+NDSKK++  +RE LY
Sbjct: 60  DLERAFWARGMDQVAGCDEAGRGPLAGPLVTAAVILPHSIWLPGLNDSKKVTAARREILY 119

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP- 130
            +I   A+ +++S    + ID+ NI++A   A+   + +L+V P++A+ D    P ++P 
Sbjct: 120 GEILEQAVSVTVSILGPREIDRLNIYQAAKTAMTLCLTHLKVRPQAAVTDAM--PLEIPG 177

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            +   ++ GDS S ++AAASIIAKVTRD LM    ++YP YGF  H GY TA+H Q I +
Sbjct: 178 MEVEDLVHGDSRSAAVAAASIIAKVTRDHLMEDMDRQYPQYGFAKHKGYGTARHIQAILD 237

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            GP+  HR +F PL+++ +
Sbjct: 238 CGPTPWHRRSFEPLKSMDL 256


>gi|312890316|ref|ZP_07749853.1| RNase HII [Mucilaginibacter paludis DSM 18603]
 gi|311297086|gb|EFQ74218.1| RNase HII [Mucilaginibacter paludis DSM 18603]
          Length = 198

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 70/177 (39%), Positives = 105/177 (59%), Gaps = 1/177 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL P+     +NDSK+I  + R EL  +I   A+  +++S
Sbjct: 13  AGCDEAGRGCLAGPVFAAAVILPPDFEHGLLNDSKQIDEQTRYELRAEIEQKAVAFAVAS 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
             ++ ID+ NI  A+  A++ A++ L + P   +IDG    +        +I+GD    S
Sbjct: 73  VDNEEIDEINILNASFLAMHRAIDQLHIAPELLIIDGNRFNKYRAIPHHCIIQGDGKYFS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           IAAASI+AK  RD  M+    ++P+Y + ++ GYPT KH+ ++ E G +  HR TFR
Sbjct: 133 IAAASILAKTYRDDYMKKIALEHPEYDWHTNKGYPTIKHRNMVVELGYTPYHRRTFR 189


>gi|289670236|ref|ZP_06491311.1| ribonuclease HII [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 242

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 83/184 (45%), Positives = 119/184 (64%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-I 81
             VAG+DE GRG LAGPV VAA++ DP+     G++DSK+++ ++RE+LY +I   A+  
Sbjct: 31  RLVAGVDEAGRGPLAGPVAVAAVVFDPSKPRINGLDDSKQLTAERREQLYARIVDRALAW 90

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           S+     + ID+ NI++AT+  +  AVE +  +   A IDG  +P+ LPC A A+I GD+
Sbjct: 91  SVVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDA 150

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +  +I AASI+AKVTRDRLM   H ++P+Y FD H GY T  H   +K  GP   HR +F
Sbjct: 151 LDRAIMAASIVAKVTRDRLMHELHTQHPEYRFDQHKGYSTPVHLAALKTHGPCPQHRRSF 210

Query: 202 RPLR 205
            P+R
Sbjct: 211 APVR 214


>gi|160892722|ref|ZP_02073512.1| hypothetical protein CLOL250_00252 [Clostridium sp. L2-50]
 gi|156865763|gb|EDO59194.1| hypothetical protein CLOL250_00252 [Clostridium sp. L2-50]
          Length = 257

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 91/191 (47%), Positives = 116/191 (60%), Gaps = 4/191 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           FE E      +   + GIDEVGRG LAGPVV AA+IL  N     +NDSK++S KKREEL
Sbjct: 63  FEYERQ--HADCQYICGIDEVGRGPLAGPVVAAAVILPENCDILYLNDSKQLSEKKREEL 120

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y++IT  A+   I  A  + ID+ NI  A  +A+  A+  L V P   L D   IPE + 
Sbjct: 121 YDEITEKAVAYGIGMADEKLIDQINILNADYEAMRIAIHKLAVKPDLLLNDAVRIPE-VE 179

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD+ S SIAAASIIAKVTRDRLM    + YP YGF  + GY + +H + +K 
Sbjct: 180 IPQVSIIKGDAKSASIAAASIIAKVTRDRLMVAYDEIYPGYGFAKNKGYGSKEHIEALKT 239

Query: 191 KGPSCIHRLTF 201
            GP  IHR +F
Sbjct: 240 IGPCEIHRRSF 250


>gi|330752641|emb|CBL87585.1| ribonuclease HII [uncultured Flavobacteria bacterium]
          Length = 199

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 108/185 (58%), Gaps = 1/185 (0%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78
           R  +     GIDE GRG LAGPV  AA+IL  N     I+DSKK+S  KREEL + I  +
Sbjct: 5   RYSDYDLECGIDEAGRGCLAGPVTAAAVILKANFKHDLIDDSKKLSKIKREELSKIIKEN 64

Query: 79  AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137
           +I  SI     + ID+ NI  A++ A++  ++NL V P   +IDG    +        VI
Sbjct: 65  SIAYSIQFIDSRKIDEVNILNASILAMHKCIKNLSVKPEFLIIDGNRFKKYKDIPHETVI 124

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGD   L+IA+ASI+AK  RD  M+   KK+P+Y +  + GYPT  H++ IK+ G +  H
Sbjct: 125 KGDGKYLNIASASILAKHARDYYMQKISKKFPNYHWFKNNGYPTKHHKEAIKKHGLTKYH 184

Query: 198 RLTFR 202
           R +F+
Sbjct: 185 RKSFK 189


>gi|225572008|ref|ZP_03780872.1| hypothetical protein RUMHYD_00302 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040541|gb|EEG50787.1| hypothetical protein RUMHYD_00302 [Blautia hydrogenotrophica DSM
           10507]
          Length = 251

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 89/191 (46%), Positives = 118/191 (61%), Gaps = 4/191 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F  E          + GIDE GRG LAGPVV  A+IL  N     +NDSKK+S  +REEL
Sbjct: 59  FAYEREYEHLGY--ICGIDEAGRGPLAGPVVAGAVILQKNCGILYLNDSKKLSAARREEL 116

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y +I   A+ + +  AS Q ID+ NI +AT +A+  A++ L++ P+  L D  +IP  + 
Sbjct: 117 YRQIVEEAVAVGVGYASPQRIDEINILQATYEAMREAIQKLKIKPQILLNDAVTIP-GVS 175

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
           C    +IKGD+ S SIAAASI+AKVTRDRLM    +  P+YGF SH GY  A H + +K+
Sbjct: 176 CPQVPIIKGDAKSASIAAASIVAKVTRDRLMVEYDRLMPEYGFASHKGYGAAAHIEALKK 235

Query: 191 KGPSCIHRLTF 201
            GPS IHR +F
Sbjct: 236 YGPSPIHRKSF 246


>gi|227486581|ref|ZP_03916897.1| ribonuclease H [Anaerococcus lactolyticus ATCC 51172]
 gi|227235399|gb|EEI85414.1| ribonuclease H [Anaerococcus lactolyticus ATCC 51172]
          Length = 207

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 82/190 (43%), Positives = 118/190 (62%), Gaps = 4/190 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E++  + E     +AGIDEVGRG LAGPVV  A+I+  N+   G+ DSKK+S KK   L 
Sbjct: 9   EIKKEIYET-YDLIAGIDEVGRGPLAGPVVTCAVIMKKNSHIEGVTDSKKLSRKKMLVLK 67

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           EKI + A+ +S   A+ + ID+ NI +ATL A+  A+++L++ P   LID   I  DLP 
Sbjct: 68  EKILADALAVSYGFANSRKIDQINIRQATLQAMKDALDHLEIRPDIVLIDAERIDTDLP- 126

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               ++KGD    +I+ ASI+AKV RD +M    K YP YGF+++ GY T  H Q +++ 
Sbjct: 127 -QLNIVKGDLNEYAISCASILAKVRRDDIMINFSKIYPGYGFETNFGYGTKAHYQGLEQH 185

Query: 192 GPSCIHRLTF 201
           G + IHR +F
Sbjct: 186 GETPIHRQSF 195


>gi|148560173|ref|YP_001258413.1| ribonuclease HII [Brucella ovis ATCC 25840]
 gi|294851769|ref|ZP_06792442.1| ribonuclease HII [Brucella sp. NVSL 07-0026]
 gi|166225171|sp|A5VNW6|RNH2_BRUO2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|148371430|gb|ABQ61409.1| ribonuclease HII [Brucella ovis ATCC 25840]
 gi|294820358|gb|EFG37357.1| ribonuclease HII [Brucella sp. NVSL 07-0026]
          Length = 220

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 96/203 (47%), Positives = 136/203 (66%), Gaps = 2/203 (0%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
            +P  P F  E  + ++ +  +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++
Sbjct: 13  DLPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLT 72

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
             +RE LYE I + AI +S++S S + ID  +I KA L+A+  AV  L + P  AL+DGR
Sbjct: 73  AARREALYEIILTKAITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGR 132

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +P  L C   A++KGD  S+SIAAASI+AKVTRDR+M  A   +P YG + H GY T K
Sbjct: 133 DVPPGLSCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQK 192

Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205
           H+  I+ +GP   +HR TF P++
Sbjct: 193 HRAAIESEGPVPGLHRYTFAPIK 215


>gi|299142243|ref|ZP_07035376.1| ribonuclease HII [Prevotella oris C735]
 gi|298576332|gb|EFI48205.1| ribonuclease HII [Prevotella oris C735]
          Length = 220

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 72/188 (38%), Positives = 102/188 (54%), Gaps = 11/188 (5%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL P+     +NDSKK+S ++R  L E+I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPPDYDNPALNDSKKLSVRQRYALREQIEHDALAWAVGV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-----DLP-----CQAFA 135
           A+ + ID+ NI  A+  A++ A++ L+  P + ++DG           LP          
Sbjct: 73  ATPEEIDEINILHASFLAMHRALDQLKKRPEAVIVDGNHFDPYVVGRGLPNAGKQLPHTC 132

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           VIKGD    +IAAASI+AK  RD  M    K YP Y ++ + GYPT KH   I E G   
Sbjct: 133 VIKGDGKYQNIAAASILAKTYRDDYMTEQAKLYPFYDWEKNKGYPTKKHYAGIAEHGICE 192

Query: 196 IHRLTFRP 203
           +HR ++  
Sbjct: 193 LHRRSYNT 200


>gi|150025268|ref|YP_001296094.1| ribonuclease HII [Flavobacterium psychrophilum JIP02/86]
 gi|189043597|sp|A6GYW0|RNH2_FLAPJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|149771809|emb|CAL43283.1| Ribonuclease HII [Flavobacterium psychrophilum JIP02/86]
          Length = 219

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 76/199 (38%), Positives = 105/199 (52%), Gaps = 21/199 (10%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL  N     +NDSK++S K RE+L   I + AI  S++ 
Sbjct: 13  AGTDEAGRGCLAGPVTAAAVILPENFESKILNDSKQLSEKTREQLKPIIEALAISFSVTH 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS--------------------I 125
                ID+ NI  A+L A+   V  L   P   + DG                      I
Sbjct: 73  LDPLIIDEINILNASLKAMQECVLQLNPTPLYIIADGNRPLLSKNSFKKCSGKIFTNREI 132

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
                  + ++IKGDS  LSIAAAS++AK  RD  M   H+++P Y +  + GYPT +H+
Sbjct: 133 EILQSIPSSSIIKGDSKYLSIAAASVLAKTYRDEYMNTIHEEFPMYNWKKNKGYPTKEHR 192

Query: 186 QVIKEKGPSCIHRLTFRPL 204
           + I++ G +  HR+TFR L
Sbjct: 193 EAIRKYGVTKYHRMTFRLL 211


>gi|19704706|ref|NP_604268.1| ribonuclease HII [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|39932432|sp|Q8RDX3|RNH2_FUSNN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|19715020|gb|AAL95567.1| Ribonuclease HII [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 215

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 84/207 (40%), Positives = 119/207 (57%), Gaps = 11/207 (5%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GIND 59
           M    I + P +     + +     V G+DE GRG LAGPVV AA+IL         IND
Sbjct: 1   MLMEEIMDNPLY-----LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKEYTEELDEIND 55

Query: 60  SKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-- 117
           SKK++ KKRE+LY+ I  +  +++  ++ + IDK NI  A   A+  A+++L+ +     
Sbjct: 56  SKKLTEKKREKLYDIIMKNFDVAVGISTVEEIDKLNILNADFLAMRRALKDLKSLKNEKE 115

Query: 118 --ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
              L+DG    ++   +   ++KGD+ SLSIAAASIIAKVTRDRLM+     YPDY F+ 
Sbjct: 116 YTVLVDGNLKIKEYIGKQLPIVKGDAKSLSIAAASIIAKVTRDRLMKDLANIYPDYSFEK 175

Query: 176 HVGYPTAKHQQVIKEKGPSC-IHRLTF 201
           H GY T  H + IK+KG    +HR  F
Sbjct: 176 HKGYGTKTHIEAIKDKGAIEGVHRKVF 202


>gi|153954034|ref|YP_001394799.1| ribonuclease HII [Clostridium kluyveri DSM 555]
 gi|189043584|sp|A5N820|RNH2_CLOK5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|146346915|gb|EDK33451.1| Hypothetical protein CKL_1409 [Clostridium kluyveri DSM 555]
          Length = 288

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 87/192 (45%), Positives = 117/192 (60%), Gaps = 9/192 (4%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELYEKIT 76
           N   VAG DEVGRG LAGP+V AA+IL+ N      +  G+ DSKK++ K R EL + I 
Sbjct: 99  NYIYVAGTDEVGRGPLAGPIVAAAVILNLNYVEDKKLILGVKDSKKLTQKARYELSQTIK 158

Query: 77  SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135
             A+  SI+  +++ IDK  I     + +  AV  L++     L DG ++ ++LP +   
Sbjct: 159 EKALSYSIAVINNKEIDKRGISWCNNEVLRKAVLGLKLPVELVLSDGYAV-KNLPVRNEF 217

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           VIKGDS S+SIA+ASIIAKV RD LMR   K Y +Y F S+ GY T +H   IK+ G   
Sbjct: 218 VIKGDSKSVSIASASIIAKVYRDELMREYSKVYTEYNFQSNSGYGTKEHIGAIKKYGTCK 277

Query: 196 IHRLTFRPLRNL 207
           IHRL+F  LRN+
Sbjct: 278 IHRLSF--LRNI 287


>gi|89898164|ref|YP_515274.1| ribonuclease HII [Chlamydophila felis Fe/C-56]
 gi|123483565|sp|Q255A9|RNH2_CHLFF RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|89331536|dbj|BAE81129.1| ribonuclease HII [Chlamydophila felis Fe/C-56]
          Length = 209

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 91/195 (46%), Positives = 117/195 (60%), Gaps = 4/195 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  V  +    +AG+DEVGRG LAGPVV  A IL    I  G+NDSKK+S K+R  + +
Sbjct: 16  FEEEVFSEGFSIIAGVDEVGRGPLAGPVVAGACILPRGKIFAGVNDSKKLSPKERGRMRD 75

Query: 74  KITSS--AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            + +       I   S + ID+ NI +AT +A+  A+ NL V P   L+DG  +P  +PC
Sbjct: 76  ILVNDPDVYYGIGVVSVERIDEINILEATKEAMAVAIANLPVHPDFLLVDGLHLPHKIPC 135

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   +IKGDS   SIAAASIIAK  RD LMR  H++YPDYGFD H GY TA H   +K  
Sbjct: 136 K--KIIKGDSKVASIAAASIIAKEYRDDLMRELHQRYPDYGFDKHKGYGTAAHLAALKAF 193

Query: 192 GPSCIHRLTFRPLRN 206
           GP   HR +F P+R 
Sbjct: 194 GPCDCHRKSFAPIRR 208


>gi|58581586|ref|YP_200602.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|75435665|sp|Q5H1F4|RNH2_XANOR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|58426180|gb|AAW75217.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 252

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 83/183 (45%), Positives = 119/183 (65%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-IS 82
            VAG+DE GRG LAGPV VAA++ DPN     G++DSK+++ ++RE+LY +I   A+  S
Sbjct: 42  LVAGVDEAGRGPLAGPVAVAAVVFDPNKPRINGLDDSKQLTAERREQLYARIVDRALSWS 101

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +     + ID+ NI++AT+  +  AVE +  +   A IDG  +P+ LPC A A+I GD++
Sbjct: 102 VVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDAL 161

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +I AASI+AKVTRDRLM   H ++P+Y FD H GY T  H   ++  GP   HR +F 
Sbjct: 162 DRAIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYSTPMHLAALQTHGPCPQHRRSFA 221

Query: 203 PLR 205
           P+R
Sbjct: 222 PVR 224


>gi|219854648|ref|YP_002471770.1| hypothetical protein CKR_1305 [Clostridium kluyveri NBRC 12016]
 gi|219568372|dbj|BAH06356.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 290

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 87/192 (45%), Positives = 117/192 (60%), Gaps = 9/192 (4%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELYEKIT 76
           N   VAG DEVGRG LAGP+V AA+IL+ N      +  G+ DSKK++ K R EL + I 
Sbjct: 101 NYIYVAGTDEVGRGPLAGPIVAAAVILNLNYVEDKKLILGVKDSKKLTQKARYELSQTIK 160

Query: 77  SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135
             A+  SI+  +++ IDK  I     + +  AV  L++     L DG ++ ++LP +   
Sbjct: 161 EKALSYSIAVINNKEIDKRGISWCNNEVLRKAVLGLKLPVELVLSDGYAV-KNLPVRNEF 219

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           VIKGDS S+SIA+ASIIAKV RD LMR   K Y +Y F S+ GY T +H   IK+ G   
Sbjct: 220 VIKGDSKSVSIASASIIAKVYRDELMREYSKVYTEYNFQSNSGYGTKEHIGAIKKYGTCK 279

Query: 196 IHRLTFRPLRNL 207
           IHRL+F  LRN+
Sbjct: 280 IHRLSF--LRNI 289


>gi|118444390|ref|YP_878279.1| ribonuclease HII [Clostridium novyi NT]
 gi|189043585|sp|A0Q0X7|RNH2_CLONN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|118134846|gb|ABK61890.1| ribonuclease H [Clostridium novyi NT]
          Length = 269

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 87/205 (42%), Positives = 119/205 (58%), Gaps = 10/205 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKI 63
           R  +E +    +     +AG DEVGRG LAGP+V AA++LD       N+   INDSKKI
Sbjct: 65  RNMYEFDKKYIKSG-TYLAGADEVGRGPLAGPIVAAAVVLDLDIINDENLILRINDSKKI 123

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           S + REEL + I   A+  SI   S + ID+  I     + +  +V NL+V P   L DG
Sbjct: 124 SFEVREELSKIIKERAVSYSIQEISSEEIDEKGIAWCNNEVLKRSVCNLKVDPDLVLSDG 183

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
             I ++       V+KGD+ S SIA ASIIAKV RD LM    KKYP+Y F+ ++GY T 
Sbjct: 184 YKI-KNCTINNEFVVKGDAKSASIACASIIAKVYRDNLMIEYSKKYPEYMFNKNMGYGTK 242

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207
           +H + IK+ G + IHR +F  L+N+
Sbjct: 243 EHIEAIKKFGCTKIHRKSF--LKNI 265


>gi|88608875|ref|YP_506577.1| ribonuclease HII [Neorickettsia sennetsu str. Miyayama]
 gi|123491623|sp|Q2GD69|RNH2_NEOSM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|88601044|gb|ABD46512.1| ribonuclease HII [Neorickettsia sennetsu str. Miyayama]
          Length = 195

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 79/194 (40%), Positives = 111/194 (57%), Gaps = 4/194 (2%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77
            R+     +AG+DEVGRG LAGPVV  A+IL  N    G  DSK +S   R   YE+I S
Sbjct: 3   YRKSENGLIAGVDEVGRGCLAGPVVACAVILTENLAIPG--DSKVLSRAVRLSWYEEIIS 60

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC--QAFA 135
           ++  +I  +S + I+  NI  ATL A+  A+E L V+P + LIDGR I  +     +  +
Sbjct: 61  NSYNAIGMSSVKEIETMNILNATLLAMERALERLPVVPTTVLIDGRDIINNAAKYKEVKS 120

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           V+ GD I   I AASI+AKVTRDRLM      YP Y +  + GY T +H + + + G + 
Sbjct: 121 VVSGDKIYGEIKAASIVAKVTRDRLMEGLDLTYPYYRWKFNKGYGTKEHLEALAKYGVTD 180

Query: 196 IHRLTFRPLRNLSV 209
            HR  F P++ + +
Sbjct: 181 HHRRKFAPVKRMLL 194


>gi|281491813|ref|YP_003353793.1| ribonuclease HII [Lactococcus lactis subsp. lactis KF147]
 gi|281375527|gb|ADA65037.1| Ribonuclease HII [Lactococcus lactis subsp. lactis KF147]
          Length = 258

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 83/197 (42%), Positives = 118/197 (59%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            E E  +  + +  +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKK+   K   +
Sbjct: 59  LEFEKELYGQGIQLIAGIDEVGRGPLAGPVVTAAVILPNNCKIRGLNDSKKVPKSKHHAI 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
             +I   A+ I I     + ID+ NI++AT  A+  AV  L V P   LID   +  DLP
Sbjct: 119 LSEIQEKALAIGIGIVDAEKIDEVNIYEATKIAMIQAVSKLSVKPEHLLIDAMVL--DLP 176

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +I GD+ S SIAAASI+AKVTRD +M+    ++P+Y F+ + GY TAKH + + +
Sbjct: 177 IAQTKIIHGDARSASIAAASIVAKVTRDEMMKEFALEFPEYDFEHNAGYGTAKHLEALTK 236

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR ++ P++ +
Sbjct: 237 YGITRIHRKSYEPIKTM 253


>gi|166712746|ref|ZP_02243953.1| ribonuclease HII [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 251

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 83/183 (45%), Positives = 118/183 (64%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-IS 82
            VAG+DE GRG LAGPV VAA++ DPN     G++DSK+++ ++RE LY +I   A+  S
Sbjct: 41  LVAGVDEAGRGPLAGPVAVAAVVFDPNKPRINGLDDSKQLTAERREHLYARIVDRALAWS 100

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +     + ID+ NI++AT+  +  AVE +  +   A IDG  +P+ LPC A A+I GD++
Sbjct: 101 VVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDAL 160

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +I AASI+AKVTRDRLM   H ++P+Y FD H GY T  H   ++  GP   HR +F 
Sbjct: 161 DRTIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYSTPMHLAALQTHGPCPQHRRSFA 220

Query: 203 PLR 205
           P+R
Sbjct: 221 PVR 223


>gi|84623510|ref|YP_450882.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|97189477|sp|Q2P4B9|RNH2_XANOM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|84367450|dbj|BAE68608.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 246

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 83/183 (45%), Positives = 119/183 (65%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-IS 82
            VAG+DE GRG LAGPV VAA++ DPN     G++DSK+++ ++RE+LY +I   A+  S
Sbjct: 36  LVAGVDEAGRGPLAGPVAVAAVVFDPNKPRINGLDDSKQLTAERREQLYARIVDRALAWS 95

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +     + ID+ NI++AT+  +  AVE +  +   A IDG  +P+ LPC A A+I GD++
Sbjct: 96  VVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDAL 155

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +I AASI+AKVTRDRLM   H ++P+Y FD H GY T  H   ++  GP   HR +F 
Sbjct: 156 DRAIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYSTPMHLAALQTHGPCPQHRRSFA 215

Query: 203 PLR 205
           P+R
Sbjct: 216 PVR 218


>gi|239617249|ref|YP_002940571.1| Ribonuclease H [Kosmotoga olearia TBF 19.5.1]
 gi|239506080|gb|ACR79567.1| Ribonuclease H [Kosmotoga olearia TBF 19.5.1]
          Length = 227

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 89/207 (42%), Positives = 123/207 (59%), Gaps = 7/207 (3%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           M C +  E   F+   M  EK    +AG+DE GRG LAGPVV AA+IL       G+ DS
Sbjct: 1   MRCENTEELLDFD--RMYIEK-FGVIAGLDEAGRGPLAGPVVAAAVIL--GEKIEGLFDS 55

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K ++ K REEL++KI   A + I  +S   ID  NI +AT  A+  A++ L + P   +I
Sbjct: 56  KALTEKVREELFDKIIKKAKVGIGLSSPDEIDTFNIFEATKLAMNRAIKKLPIQPDYVII 115

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG+ +   L  +   ++ GD  S SIAAASI+AKV RDRLM+     YP+Y +D + GY 
Sbjct: 116 DGKHLK--LNNRGECIVSGDQKSASIAAASIVAKVFRDRLMKALAVLYPEYSWDKNKGYG 173

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           TA+H + +K  GP+  HRLTF P++ L
Sbjct: 174 TAEHLKALKIYGPTLWHRLTFSPVKAL 200


>gi|167753859|ref|ZP_02425986.1| hypothetical protein ALIPUT_02144 [Alistipes putredinis DSM 17216]
 gi|167658484|gb|EDS02614.1| hypothetical protein ALIPUT_02144 [Alistipes putredinis DSM 17216]
          Length = 198

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 65/176 (36%), Positives = 98/176 (55%), Gaps = 1/176 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA++L P+     +NDSK+++ ++R+ L   +   A+   + +
Sbjct: 13  AGCDEAGRGCLAGPVFAAAVMLPPDFSHPLLNDSKQMTARQRDLLRAIVEREALAWVVKA 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + ID+ NI  A+ + +  AV  L + P    IDG      L      ++KGD     
Sbjct: 73  VSAERIDQINILNASFEGMSLAVAELPIRPGFLAIDGNRFRTTLDIPYRCIVKGDGKYAD 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           IAAAS++AK  RD  M      +P+YG++ + GYPT +H+  I+  G +  HRLTF
Sbjct: 133 IAAASVLAKTHRDEYMERLAGDFPEYGWERNKGYPTREHRLAIRRYGLTPHHRLTF 188


>gi|297564923|ref|YP_003683895.1| Ribonuclease H [Meiothermus silvanus DSM 9946]
 gi|296849372|gb|ADH62387.1| Ribonuclease H [Meiothermus silvanus DSM 9946]
          Length = 216

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 81/198 (40%), Positives = 111/198 (56%), Gaps = 7/198 (3%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
           LE    E  +  VAG+DE GRGA AGPVVVAA+IL     PF   DSK +S ++RE L  
Sbjct: 10  LERDWWEAGLR-VAGVDEAGRGAWAGPVVVAAVILPRGEHPF--RDSKTLSARQREALEA 66

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           ++ + A+   +  A+   I++  I KAT  A   A+E L V+P + + D   +  +    
Sbjct: 67  RVKAVALGWGVGLAAVDEIERLGILKATHRAAQRALECLAVLPDALITDYLRLEREWRGP 126

Query: 133 A---FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           A       K D  S ++AAASI+AKV RDR M     +YP YGF +H GY T  H++ + 
Sbjct: 127 ASLLRCPPKADRDSPTVAAASILAKVARDRHMLELEAQYPGYGFATHKGYGTTLHRENLI 186

Query: 190 EKGPSCIHRLTFRPLRNL 207
             GPS +HR TF P+R L
Sbjct: 187 RLGPSPVHRKTFAPVRCL 204


>gi|304316917|ref|YP_003852062.1| ribonuclease H [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302778419|gb|ADL68978.1| Ribonuclease H [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 245

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 82/190 (43%), Positives = 111/190 (58%), Gaps = 2/190 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E  + + N   + G+DEVGRG LAGPVV   ++L  +     +NDSKK+  +KRE L 
Sbjct: 47  QYERELYKLNYKAIGGVDEVGRGPLAGPVVAGCVVLPKDVFIPDVNDSKKLGEEKRELLS 106

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E I  +AI   I    ++YID  NI  +T +A+  A+  + V     LID   IP ++  
Sbjct: 107 EVIKKNAIAYGIGIIDNEYIDSVNILNSTYEAMRIAISKIDVEIDCLLIDAVKIP-NIDI 165

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               +IKGD  S+SIAAASIIAKV RD LM+   + YP YGF  + GY T +H + IK+ 
Sbjct: 166 MQKPIIKGDMKSISIAAASIIAKVERDNLMKKYDELYPQYGFKKNKGYGTKEHIEAIKKY 225

Query: 192 GPSCIHRLTF 201
           GP  IHR TF
Sbjct: 226 GPCPIHRKTF 235


>gi|159896757|ref|YP_001543004.1| ribonuclease H [Herpetosiphon aurantiacus ATCC 23779]
 gi|238687141|sp|A9B6H3|RNH2_HERA2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|159889796|gb|ABX02876.1| Ribonuclease H [Herpetosiphon aurantiacus ATCC 23779]
          Length = 207

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 83/196 (42%), Positives = 116/196 (59%), Gaps = 7/196 (3%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-----FGINDSKKISHKKRE 69
           E  +       VAG+DEVGRG  AGPVV AA+    + +       GINDSK +S + R+
Sbjct: 8   EQQLWRNGARIVAGVDEVGRGCWAGPVVAAAVSFPTHLLNDPVALAGINDSKTLSAEARQ 67

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            + ++I   A  I +   S   ID   I +AT  A+ HAV +L  +P   +ID   +PE 
Sbjct: 68  AMAQQIRHLASGIGLGVVSAHLIDLFGIAEATKWAMMHAVLSLPSLPDGLVIDWVKLPE- 126

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LP    ++ KGD+IS+S+AAASIIAKV RD LM    ++ P YG+ +H GY TA+HQ+ +
Sbjct: 127 LPLLQRSLPKGDAISISVAAASIIAKVYRDNLMHEYDQRDPRYGWAAHKGYGTAQHQRAL 186

Query: 189 KEKGPSCIHRLTFRPL 204
              GPS +HR +F+PL
Sbjct: 187 AAHGPSGLHRRSFKPL 202


>gi|325929586|ref|ZP_08190700.1| RNase HII [Xanthomonas perforans 91-118]
 gi|325540096|gb|EGD11724.1| RNase HII [Xanthomonas perforans 91-118]
          Length = 245

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 83/200 (41%), Positives = 125/200 (62%), Gaps = 2/200 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHK 66
           + P F+   +   ++   +AG+DE GRG LAGPV VAA++ DP      G++DSK+++ +
Sbjct: 19  QSPLFDQSQIPNVESRRLIAGVDEAGRGPLAGPVAVAAVVFDPGKPRINGLDDSKQLTAE 78

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +RE+LY +I   A+  S+     + ID+ NI++AT+  +  AVE +  +   A IDG  +
Sbjct: 79  RREQLYARIVDRALAWSVVLIHSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRV 138

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P+ LPC A A+I GD++  +I AASI+AKVTRDRLM   H ++P+Y FD H GY T  H 
Sbjct: 139 PKGLPCPAEALIGGDALDRAIMAASIVAKVTRDRLMYELHTRHPEYRFDQHKGYSTPVHL 198

Query: 186 QVIKEKGPSCIHRLTFRPLR 205
             ++  GP   HR +F P+R
Sbjct: 199 AALQTHGPCPQHRRSFAPVR 218


>gi|282899032|ref|ZP_06307014.1| Ribonuclease HII/HIII [Cylindrospermopsis raciborskii CS-505]
 gi|281196172|gb|EFA71087.1| Ribonuclease HII/HIII [Cylindrospermopsis raciborskii CS-505]
          Length = 213

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 78/192 (40%), Positives = 111/192 (57%), Gaps = 6/192 (3%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK 74
             +  W +AG+DEVGRGAL GPVV AA+IL  + +       I DSK++S  +R  L ++
Sbjct: 12  WNQEGW-IAGVDEVGRGALFGPVVAAAVILPNSALSILVESKIKDSKQLSVSRRHYLAQQ 70

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           +   A+   I  A+   ID+ NI +ATL A+  AV  L+  P   L+DG     DL  + 
Sbjct: 71  VAQLAVEWKIGYATTAEIDRLNILQATLLAMKRAVLKLKSQPSLCLVDGNQFIRDLLIEQ 130

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +I+GD  SL+IAAASI+AKV RD L+    KKY  Y    + GY + KH   +++ GP
Sbjct: 131 QTIIQGDRRSLNIAAASIMAKVWRDDLVVRLGKKYDMYDLHRNKGYGSRKHLLALQKYGP 190

Query: 194 SCIHRLTFRPLR 205
           S +HR +F P +
Sbjct: 191 SPLHRRSFSPCQ 202


>gi|313159708|gb|EFR59065.1| ribonuclease HII [Alistipes sp. HGB5]
          Length = 203

 Score =  228 bits (582), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 67/176 (38%), Positives = 98/176 (55%), Gaps = 1/176 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA++L P+     +NDSK+++ + RE+L   I   A+  ++ +
Sbjct: 17  AGCDEAGRGCLAGPVFAAAVMLPPDFHDPLLNDSKQMTERNREKLRTIIEHEAVAWAVEA 76

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + ID+ NI  A+ + +  A   L   P    IDG      L      ++KGD     
Sbjct: 77  VSAERIDEINILNASFEGMSLAAARLDPAPGFLAIDGNRFRTRLELPYRCIVKGDGKYAD 136

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           IAAAS++AK  RD  M    +++P YG+  + GYPT +H+  I+E G +  HRLTF
Sbjct: 137 IAAASVLAKTHRDEYMLRLAEEFPQYGWRKNKGYPTREHRLAIREYGLTPHHRLTF 192


>gi|297569140|ref|YP_003690484.1| ribonuclease H [Desulfurivibrio alkaliphilus AHT2]
 gi|296925055|gb|ADH85865.1| Ribonuclease H [Desulfurivibrio alkaliphilus AHT2]
          Length = 218

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 77/196 (39%), Positives = 108/196 (55%), Gaps = 3/196 (1%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
               E  +  +    VAGIDE GRG LAGPVV A ++L          DSK++  + R  
Sbjct: 15  SLAFERSLESQGYRLVAGIDEAGRGPLAGPVVAACVVLPAGCEASRFRDSKQLKPELRCR 74

Query: 71  LYEKITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           L  +I +       +   +   ID+ NI +A+L A+  AV  L   P   L+DG+     
Sbjct: 75  LAAEIEALPGVYWGVGVVAPAEIDRLNILQASLLAMQKAVAALAAEPDFLLVDGKH-QLP 133

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LP    A+++GDS S SIAAASIIAKV RD +M   H++YP Y F  H GY TA+H  ++
Sbjct: 134 LPLPQQALVRGDSRSASIAAASIIAKVRRDEIMADYHRRYPQYNFHRHKGYGTAEHLHLL 193

Query: 189 KEKGPSCIHRLTFRPL 204
           ++ GP  IHR +F+P+
Sbjct: 194 RQHGPCPIHRRSFKPV 209


>gi|89900787|ref|YP_523258.1| ribonuclease HII [Rhodoferax ferrireducens T118]
 gi|122479254|sp|Q21WX6|RNH2_RHOFD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|89345524|gb|ABD69727.1| Ribonuclease H [Rhodoferax ferrireducens T118]
          Length = 207

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 81/182 (44%), Positives = 116/182 (63%), Gaps = 2/182 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS- 82
             VAG+DE GRG LAGPVV AA+ILD      G+ DSK +S ++RE+L+++I + A+   
Sbjct: 18  GLVAGVDEAGRGPLAGPVVAAAVILDDLQPIKGLADSKILSARRREQLFDEIRAKALCCC 77

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+ AS + I++ NI +ATL A+  AVE L++ P   L+DG  +P  L  +A A++KGD++
Sbjct: 78  IAQASVEEIERLNILQATLLAMRRAVEGLRLKPALVLVDGNRLPV-LTMRAEAIVKGDAL 136

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +I+AASI+AKV RDR       +YP YGF  H GY T +H   + + G    HR TF 
Sbjct: 137 VAAISAASILAKVHRDRWCAEVDVQYPQYGFARHKGYGTVQHLAALTKHGACPQHRKTFG 196

Query: 203 PL 204
           P+
Sbjct: 197 PV 198


>gi|91205326|ref|YP_537681.1| ribonuclease HII [Rickettsia bellii RML369-C]
 gi|157826929|ref|YP_001495993.1| ribonuclease HII [Rickettsia bellii OSU 85-389]
 gi|122425777|sp|Q1RJ72|RNH2_RICBR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166226647|sp|A8GVS9|RNH2_RICB8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|91068870|gb|ABE04592.1| Ribonuclease HII [Rickettsia bellii RML369-C]
 gi|157802233|gb|ABV78956.1| ribonuclease HII [Rickettsia bellii OSU 85-389]
          Length = 196

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 95/178 (53%), Positives = 117/178 (65%), Gaps = 2/178 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
           + +AGIDE GRG LAGPVV AA+I+D NNI  GI DSKK+S KKRE LYE+IT++ I + 
Sbjct: 15  FILAGIDEAGRGPLAGPVVAAAVIVDQNNIIAGIKDSKKLSKKKRELLYEQITANYIWAT 74

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
              SH  IDK NI +AT  A   A ENL   P   L+DG     D   +  ++I GD++S
Sbjct: 75  GIISHTEIDKINILEATKKACILAAENLSTKPEIVLVDGNMQFSD--KRFISIINGDNLS 132

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           LSIAAASIIAKVTRDRLM     ++P Y +  + GY T +H Q IKE G S  HRL+F
Sbjct: 133 LSIAAASIIAKVTRDRLMLELSNEFPQYLWHKNSGYGTKEHAQAIKEYGLSPYHRLSF 190


>gi|92118687|ref|YP_578416.1| ribonuclease HII [Nitrobacter hamburgensis X14]
 gi|122417043|sp|Q1QIJ1|RNH2_NITHX RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|91801581|gb|ABE63956.1| RNase HII [Nitrobacter hamburgensis X14]
          Length = 267

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 96/195 (49%), Positives = 129/195 (66%), Gaps = 1/195 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F+ E  + ++ +WPVAG DEVGRG LAGPVV AA++LDP  IP GI+DSK+++  +RE
Sbjct: 43  PSFQHERALLKRGVWPVAGCDEVGRGPLAGPVVAAAVVLDPKRIPKGIDDSKRLTAARRE 102

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           EL+E+IT++A  +++ AS   ID+ NI +A+L A+  AV  L  +PR   +DGR   E +
Sbjct: 103 ELFEEITATASFAVAFASTARIDRDNILRASLWALARAVHALPDMPRHVFVDGRDRIE-I 161

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C    VI GD I LSIAAASI+AKVTRDRLM    +  P YGF++H GY    H + + 
Sbjct: 162 ACACEPVIGGDGIVLSIAAASIVAKVTRDRLMCKLAQDCPGYGFETHKGYGVPAHLEALG 221

Query: 190 EKGPSCIHRLTFRPL 204
             GPS  HR  F P+
Sbjct: 222 RLGPSPHHRSFFAPV 236


>gi|291514820|emb|CBK64030.1| RNase HII [Alistipes shahii WAL 8301]
          Length = 199

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 68/176 (38%), Positives = 98/176 (55%), Gaps = 1/176 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA++L P+     +NDSK+++ + RE+L   I   A+  ++ +
Sbjct: 13  AGCDEAGRGCLAGPVFAAAVMLPPDFHDPLLNDSKQMTERNREKLRAVIEREAVAWAVEA 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S   ID+ NI  A+ + +  AV  L   P    IDG      L      ++KGD     
Sbjct: 73  VSAARIDEINILNASFEGMSLAVARLDPAPAFLAIDGNRFRTRLEIPWRCIVKGDGKYAD 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           IAAAS++AK  RD  M    +++P YG+  + GYPT +H+  I+E G +  HRLTF
Sbjct: 133 IAAASVLAKTHRDEYMLCIAEEFPQYGWAKNKGYPTREHRLAIREHGLTPHHRLTF 188


>gi|46579247|ref|YP_010055.1| ribonuclease HII [Desulfovibrio vulgaris str. Hildenborough]
 gi|81404983|sp|Q72DU5|RNH2_DESVH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|46448661|gb|AAS95314.1| ribonuclease HII [Desulfovibrio vulgaris str. Hildenborough]
 gi|311233076|gb|ADP85930.1| Ribonuclease H [Desulfovibrio vulgaris RCH1]
          Length = 220

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 85/190 (44%), Positives = 108/190 (56%), Gaps = 11/190 (5%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AGIDE GRG LAGPVV AA+IL       G+ DSKK++  +RE L E I S A+   I  
Sbjct: 19  AGIDEAGRGCLAGPVVAAAVILPQEYALPGLTDSKKLTAARRESLAEGIRSCAVTWGIGV 78

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPE----DLPC-----QAFA 135
              + ID+ NI +AT  A+  AV  L+  P + LIDG +++P      L C        A
Sbjct: 79  VWPRDIDRINILQATFRAMARAVRVLRQPPPAILIDGDKTLPPHVLTSLSCDGHLPTQRA 138

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           +I GD    +I+AASI+AK  RDRLM    ++Y  YGF  H GY TA+H   I   GP  
Sbjct: 139 IIGGDGCIPAISAASILAKTFRDRLMDTLDRRYHGYGFAKHKGYGTAEHLAAIAAHGPCA 198

Query: 196 IHRLTFRPLR 205
            HRLTFR +R
Sbjct: 199 QHRLTFRGVR 208


>gi|240142860|ref|YP_002967373.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Methylobacterium
           extorquens AM1]
 gi|240012807|gb|ACS44032.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Methylobacterium
           extorquens AM1]
          Length = 222

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 83/200 (41%), Positives = 116/200 (58%), Gaps = 6/200 (3%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHK 66
           RP +E E    +     VAG+DE GRG LAG V  AA+++          + DSK ++  
Sbjct: 4   RPTYERERAAGK----VVAGVDECGRGCLAGEVWAAAVVIPDWAAAGVSAVADSKILAAA 59

Query: 67  KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           KRE+L E + +S   +I +AS + I++ NI +AT+ A+  AV  L V P   L+DG  +P
Sbjct: 60  KREQLCEMLRTSCHAAIGTASLEEIERLNILQATMLAMSRAVAALPVRPDHVLVDGNRVP 119

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           + LPC A AV+ GD+   +IAAASI+AKV RD  M   H  +P YG+D + GY T +H  
Sbjct: 120 KGLPCAATAVVGGDATVRAIAAASIVAKVGRDAAMASLHLAHPAYGWDRNAGYGTPEHLA 179

Query: 187 VIKEKGPSCIHRLTFRPLRN 206
            I+  GPS  HR TF  +R 
Sbjct: 180 AIRTHGPSPHHRRTFAGVRE 199


>gi|255530318|ref|YP_003090690.1| ribonuclease HII [Pedobacter heparinus DSM 2366]
 gi|255343302|gb|ACU02628.1| Ribonuclease H [Pedobacter heparinus DSM 2366]
          Length = 203

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 72/176 (40%), Positives = 100/176 (56%), Gaps = 1/176 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPV  AA+IL P+ I   +NDSK+++H++R+ L   I   AI  +++ 
Sbjct: 13  AGCDEAGRGCLAGPVFAAAVILPPDFIAGELNDSKQLNHQQRKRLRIIIEKEAIAWAVAE 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
             +  ID+ NI  A+  A++ A+E L V P+   IDG    +        ++KGD   L+
Sbjct: 73  VDNIEIDQINILNASFLAMHRAIEKLLVKPQYLSIDGNRFKKYPDIPHACIVKGDGKYLN 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           IAAASI+AK  RD  M     +YP Y +  + GYPT  H+    E G S  HR TF
Sbjct: 133 IAAASILAKTHRDEFMERISDEYPHYQWHQNKGYPTVVHRSAALEHGLSPYHRKTF 188


>gi|302878990|ref|YP_003847554.1| Ribonuclease H [Gallionella capsiferriformans ES-2]
 gi|302581779|gb|ADL55790.1| Ribonuclease H [Gallionella capsiferriformans ES-2]
          Length = 204

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 89/194 (45%), Positives = 125/194 (64%), Gaps = 2/194 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  + ++    + G+DE GRG LAGPV  AA+ILDPNN   G+NDSKK+S K+RE+L   
Sbjct: 8   EMALNDEKFTLICGVDEAGRGPLAGPVSAAAVILDPNNPIPGLNDSKKLSEKQREKLASL 67

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   A+  +++ A+ + ID+ NI +ATL A+  AV+ LQV P+  L+DG   P D    +
Sbjct: 68  IRECALAWAVAYATVEEIDRLNILQATLLAMRRAVQALQVQPQLVLVDGLYCP-DTGIAS 126

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            A++KGDS   +I+AASI+AK  RD LM    ++YP YGF  H GYPTA H   ++  G 
Sbjct: 127 EAIVKGDSKVAAISAASILAKTDRDALMLQLDEQYPHYGFALHKGYPTAAHLAALQAHGV 186

Query: 194 SCIHRLTFRPLRNL 207
           S +HR +F+P+R L
Sbjct: 187 SVVHRRSFKPVRVL 200


>gi|220931581|ref|YP_002508489.1| Ribonuclease H [Halothermothrix orenii H 168]
 gi|219992891|gb|ACL69494.1| Ribonuclease H [Halothermothrix orenii H 168]
          Length = 308

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 81/202 (40%), Positives = 118/202 (58%), Gaps = 15/202 (7%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII-------LDPNNIPFGINDSKKISH 65
            L+  + ++    +AG+DE GRG LAGP                P     G++DSKK++ 
Sbjct: 62  SLQNNLFKEGFHFIAGVDEAGRGPLAGP-------VVAAAVVFKPETKVLGLDDSKKLTA 114

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           K+RE L+E+I   A+ I +    ++ IDK NI  A+L A+  A+++L       LIDG++
Sbjct: 115 KERETLFEEIYDRALSIGVGIVDNKDIDKLNILNASLKAMKKALDSLSCPVDYILIDGKN 174

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
              +L  +  AVI GD+    IAAASIIAKVTRDR++   HKKYP+YGF ++ GY T +H
Sbjct: 175 KLSELNIKQQAVIDGDNKVNVIAAASIIAKVTRDRILDKLHKKYPEYGFINNKGYGTREH 234

Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206
            + +K  GPS IHR +F  +R 
Sbjct: 235 IEALKAYGPSPIHRYSFSLVRE 256


>gi|120603190|ref|YP_967590.1| ribonuclease HII [Desulfovibrio vulgaris DP4]
 gi|166225183|sp|A1VFE7|RNH2_DESVV RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|120563419|gb|ABM29163.1| RNase HII [Desulfovibrio vulgaris DP4]
          Length = 220

 Score =  228 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 84/190 (44%), Positives = 108/190 (56%), Gaps = 11/190 (5%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AGIDE GRG LAGPVV AA+IL       G+ DSKK++  +RE L E I S A+   +  
Sbjct: 19  AGIDEAGRGCLAGPVVAAAVILPQEYTLPGLTDSKKLTAARRESLAEGIRSCAVTWGLGV 78

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPED----LPC-----QAFA 135
              + ID+ NI +AT  A+  AV  L+  P + LIDG +++P      L C        A
Sbjct: 79  VWPRDIDRINILQATFRAMARAVRVLRQPPPALLIDGDKTLPPHVLTTLSCDGHLPTQRA 138

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           +I GD    +I+AASI+AK  RDRLM    ++Y  YGF  H GY TA+H   I   GP  
Sbjct: 139 IIGGDGCIPAISAASILAKTFRDRLMDTLDRRYHGYGFAKHKGYGTAEHLAAIAAHGPCA 198

Query: 196 IHRLTFRPLR 205
            HRLTFR +R
Sbjct: 199 QHRLTFRGVR 208


>gi|282896399|ref|ZP_06304420.1| Ribonuclease HII/HIII [Raphidiopsis brookii D9]
 gi|281198687|gb|EFA73567.1| Ribonuclease HII/HIII [Raphidiopsis brookii D9]
          Length = 210

 Score =  228 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 85/210 (40%), Positives = 116/210 (55%), Gaps = 7/210 (3%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFG 56
           M   S+ E    EL     +K    VAG+DEVGRGAL GPVV AA+IL  + +       
Sbjct: 1   MHKGSVKESNWQELSDHWHQKG--WVAGVDEVGRGALFGPVVAAAVILPNSALSILVESK 58

Query: 57  INDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP 115
           I DSK++S   R  L ++I   A+   I  A+   ID+ NI +ATL A+  AV  L+  P
Sbjct: 59  IKDSKQLSVSHRRYLAQQIAQLAVEWKIGYATTAEIDRLNILQATLLAMKRAVLKLKSQP 118

Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
              L+DG     DL  +  A+I+GD  SL+IAAASI+AKV RD L+    KKY  Y    
Sbjct: 119 SLCLVDGNQFIRDLLIEQQAIIQGDRRSLNIAAASIMAKVWRDDLVVRLGKKYDMYDLHQ 178

Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           + GY + KH   +++ G S +HR +F P +
Sbjct: 179 NKGYGSQKHLLALQKHGASPLHRQSFSPCQ 208


>gi|167756891|ref|ZP_02429018.1| hypothetical protein CLORAM_02440 [Clostridium ramosum DSM 1402]
 gi|167703066|gb|EDS17645.1| hypothetical protein CLORAM_02440 [Clostridium ramosum DSM 1402]
          Length = 206

 Score =  228 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 74/189 (39%), Positives = 111/189 (58%), Gaps = 4/189 (2%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
           +     + G+DE GRG +AG +VVA ++         INDSK++S KKRE LY+ I  +A
Sbjct: 12  QAGYDYIIGLDEAGRGPMAGELVVAGVVFPKGFYDERINDSKQLSAKKREVLYDLIIENA 71

Query: 80  IIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           +   I   S   +D+ N+++A+   +   +E L+     AL D    P D P    ++IK
Sbjct: 72  LYYDIEIISVADVDRLNVYQASKQGMEKCLELLKKEKMFALTDAM--PIDYP-DHLSIIK 128

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD+ S+SIA ASI+AKVTRDRLM     +YP+YGF+ H GY T  H++ + + G   IHR
Sbjct: 129 GDAKSISIAGASILAKVTRDRLMEAYALEYPEYGFEKHKGYVTKAHKEALGKYGVCPIHR 188

Query: 199 LTFRPLRNL 207
            +F P++ +
Sbjct: 189 KSFGPVQKI 197


>gi|237734601|ref|ZP_04565082.1| ribonuclease HII [Mollicutes bacterium D7]
 gi|229382421|gb|EEO32512.1| ribonuclease HII [Coprobacillus sp. D7]
          Length = 206

 Score =  228 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 75/189 (39%), Positives = 112/189 (59%), Gaps = 4/189 (2%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
           +     + G+DEVGRG +AG +VVA ++         INDSK++S KKRE LY+ I  +A
Sbjct: 12  QAGYDYIIGLDEVGRGPMAGELVVAGVVFPKGFYDERINDSKQLSAKKREVLYDLIIENA 71

Query: 80  IIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           +   I   S   +D+ N+++A+   +   +E L+     AL D    P D P    ++IK
Sbjct: 72  LYYDIEIISVADVDRLNVYQASKQGMEKCLELLKKEKMFALTDAM--PIDYP-DHLSIIK 128

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD+ S+SIA ASI+AKVTRDRLM     +YP+YGF+ H GY T  H++ + + G   IHR
Sbjct: 129 GDAKSISIAGASILAKVTRDRLMEAYALEYPEYGFEKHKGYVTKAHKEALGKYGVCPIHR 188

Query: 199 LTFRPLRNL 207
            +F P++ +
Sbjct: 189 KSFGPVQKI 197


>gi|108798940|ref|YP_639137.1| ribonuclease HII [Mycobacterium sp. MCS]
 gi|119868055|ref|YP_938007.1| ribonuclease HII [Mycobacterium sp. KMS]
 gi|123070330|sp|Q1BAK3|RNH2_MYCSS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166226628|sp|A1UEF9|RNH2_MYCSK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|108769359|gb|ABG08081.1| RNase HII [Mycobacterium sp. MCS]
 gi|119694144|gb|ABL91217.1| RNase HII [Mycobacterium sp. KMS]
          Length = 239

 Score =  228 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 80/197 (40%), Positives = 115/197 (58%), Gaps = 4/197 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE+ +    + PVAG+DEVGRGA AGP+VVAA +L PN +     ++DSKK+  K+RE L
Sbjct: 20  LESALYRNGLGPVAGVDEVGRGACAGPLVVAACVLGPNRLESLAALDDSKKLGEKERERL 79

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+   +     + +D+  +H A ++ +  AV  L V P   L DG  +P  LP
Sbjct: 80  FPVIRRYALAYHVVFIPSEEVDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP-GLP 138

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  V+ GD+ +  IAAAS++AKV+RDRLM    +++P YGF  H GY T  H   + E
Sbjct: 139 MPSLPVVGGDAAAACIAAASVLAKVSRDRLMVAMEREHPGYGFAEHKGYSTPAHTAALAE 198

Query: 191 KGPSCIHRLTFRPLRNL 207
            GP   HR +F  +R L
Sbjct: 199 LGPCAQHRYSFINVRRL 215


>gi|21230816|ref|NP_636733.1| ribonuclease HII [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66769185|ref|YP_243947.1| ribonuclease HII [Xanthomonas campestris pv. campestris str. 8004]
 gi|39932426|sp|Q8PAW7|RNH2_XANCP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|81304856|sp|Q4USP6|RNH2_XANC8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|21112418|gb|AAM40657.1| ribonuclease HII [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66574517|gb|AAY49927.1| ribonuclease HII [Xanthomonas campestris pv. campestris str. 8004]
          Length = 240

 Score =  228 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 83/185 (44%), Positives = 118/185 (63%), Gaps = 2/185 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-I 81
             +AG+DE GRG LAGPV VAA++ DP      G++DSK++S ++RE+LY +I   A+  
Sbjct: 31  RLIAGVDEAGRGPLAGPVAVAAVVFDPAKPRINGLDDSKQLSAERREQLYARIVDRALAW 90

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           S+     + ID+ NI++AT+  +  AVE +  +   A IDG  +P+ LPC A A+I GD+
Sbjct: 91  SVVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDA 150

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +  +I AASI+AKVTRDRLMR  H ++P Y FD H GY T  H   ++  GP   HR +F
Sbjct: 151 LDRAIMAASIVAKVTRDRLMRELHAQHPQYRFDLHKGYSTPAHLAALQTHGPCPQHRRSF 210

Query: 202 RPLRN 206
            P+R 
Sbjct: 211 APVRR 215


>gi|15673275|ref|NP_267449.1| ribonuclease HII [Lactococcus lactis subsp. lactis Il1403]
 gi|13878721|sp|Q9CG17|RNH2_LACLA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|12724270|gb|AAK05391.1|AE006361_7 ribonuclease HII [Lactococcus lactis subsp. lactis Il1403]
 gi|326406831|gb|ADZ63902.1| ribonuclease HII [Lactococcus lactis subsp. lactis CV56]
          Length = 258

 Score =  228 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 82/197 (41%), Positives = 117/197 (59%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            E E  +  + +  +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKK+   K   +
Sbjct: 59  LEFEKELYGQEIQLIAGIDEVGRGPLAGPVVTAAVILPKNCKIRGLNDSKKVPKSKHHAI 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
             +I   A+ I I     + ID+ NI++AT  A+  AV  L V P   LID   +  D P
Sbjct: 119 LSEIQEKALAIGIGIVDAEKIDEVNIYEATKIAMIQAVSKLSVKPEHLLIDAMVL--DFP 176

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +I GD+ S SIAAASI+AKVTRD +M+    ++P+Y F+ + GY TAKH + + +
Sbjct: 177 IAQTKIIHGDARSASIAAASIVAKVTRDEMMKEFALEFPEYDFEHNAGYGTAKHLEALTK 236

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR ++ P++ +
Sbjct: 237 YGITRIHRKSYEPIKTM 253


>gi|229918612|ref|YP_002887258.1| ribonuclease H [Exiguobacterium sp. AT1b]
 gi|229470041|gb|ACQ71813.1| Ribonuclease H [Exiguobacterium sp. AT1b]
          Length = 250

 Score =  228 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 80/203 (39%), Positives = 116/203 (57%), Gaps = 7/203 (3%)

Query: 9   RPHFE----LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           R  FE     E   + K    V G+DEVGRG LAGPVV AA++L       G+NDSKK++
Sbjct: 51  REDFERRMIYEREWKHKGYTRVVGVDEVGRGPLAGPVVAAAVLLPDGFYLPGLNDSKKMT 110

Query: 65  HKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
              R+  Y  I   A + +       ID+ NI++AT  A+  A+  +  +  + LID   
Sbjct: 111 KSARDAAYAHIIEVAEVGVGIVEPAIIDEINIYEATKLAMTEAIHQVGEV-DALLIDAMK 169

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +  D+P Q+  +IKGD++S+SIAAAS++AKV RDR+M      YP YGF  + GY T  H
Sbjct: 170 LELDIPQQS--LIKGDTLSVSIAAASVVAKVVRDRMMEEYDLTYPGYGFAKNAGYGTETH 227

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
            + ++  G + IHR TF P++ +
Sbjct: 228 LEGLRRLGVTPIHRRTFAPIKYM 250


>gi|319952346|ref|YP_004163613.1| ribonuclease h [Cellulophaga algicola DSM 14237]
 gi|319421006|gb|ADV48115.1| Ribonuclease H [Cellulophaga algicola DSM 14237]
          Length = 198

 Score =  228 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 68/179 (37%), Positives = 98/179 (54%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
            G DE GRG LAGPV  AA++L  N     +NDSKK+S  KR  L   I   A+  +++ 
Sbjct: 12  IGTDEAGRGCLAGPVTAAAVVLPENFTNTLLNDSKKLSEIKRFSLKPIIEEFALSFAVTH 71

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
                ID  NI  A++ A+  +V  L    R  ++DG             +IKGD   +S
Sbjct: 72  IEPLIIDDINILNASILAMQKSVLKLDTTARHIIVDGNRFKPMKNYSYDCIIKGDGKYMS 131

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD +M + H+++P Y +  + GYPT +H+  I++ G +  HR +FR L
Sbjct: 132 IAAASILAKTYRDEVMNVLHEEFPMYNWKQNKGYPTKEHRAAIRKYGITKYHRKSFRQL 190


>gi|34763383|ref|ZP_00144335.1| Ribonuclease HII [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|294786017|ref|ZP_06751304.1| ribonuclease HII [Fusobacterium sp. 3_1_27]
 gi|27886956|gb|EAA24076.1| Ribonuclease HII [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|294486354|gb|EFG33717.1| ribonuclease HII [Fusobacterium sp. 3_1_27]
          Length = 214

 Score =  227 bits (580), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 81/191 (42%), Positives = 115/191 (60%), Gaps = 7/191 (3%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKIT 76
           + +     V G+DE GRG LAGPVV AA+IL   +     INDSKK++ K RE+LY+ I 
Sbjct: 11  LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSKKLTEKTREKLYDIIM 70

Query: 77  SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPC 131
            +  +++  ++ + IDK NI  A   A+  A+++L+ I +       L+DG    ++   
Sbjct: 71  KNFYVAVGVSTVEEIDKLNILNADFLAMRRALKDLENIKKDKKEYTVLVDGNLKIKEYTG 130

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   ++KGD+ SLSIAAASIIAKVTRDRLM+     YPDY F+ H GY T  H + IK+K
Sbjct: 131 KQLPIVKGDAKSLSIAAASIIAKVTRDRLMKDLASVYPDYHFEKHKGYGTKAHIEAIKDK 190

Query: 192 GPSC-IHRLTF 201
           G    +HR  F
Sbjct: 191 GAIEGVHRKVF 201


>gi|269303000|gb|ACZ33100.1| ribonuclease HII [Chlamydophila pneumoniae LPCoLN]
          Length = 214

 Score =  227 bits (580), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 84/197 (42%), Positives = 120/197 (60%), Gaps = 4/197 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  +  +    VAGIDE GRG LAGPVV +A IL    +  G+NDSKK+S K+R ++ 
Sbjct: 16  AFEKELVSEGFSVVAGIDEAGRGPLAGPVVASACILPKGKVFPGVNDSKKLSPKQRAQVR 75

Query: 73  EKITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           + +         I   S + ID+ NI +AT +A+  A+ +L + P   L+DG  +P D+P
Sbjct: 76  DALMQDPEVCFGIGVISVERIDQVNILEATKEAMLQAISSLPISPDILLVDGLYLPHDIP 135

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
           C+   +I+GD+ S SIAAASI+AK  RD LM   H+ YP+YGFD H GY T+ H + I+ 
Sbjct: 136 CK--KIIQGDAKSASIAAASILAKEHRDDLMLQLHRLYPEYGFDRHKGYGTSLHVEAIRR 193

Query: 191 KGPSCIHRLTFRPLRNL 207
            GPS  HR +F P++ +
Sbjct: 194 YGPSPCHRKSFSPIKQM 210


>gi|326791381|ref|YP_004309202.1| ribonuclease H [Clostridium lentocellum DSM 5427]
 gi|326542145|gb|ADZ84004.1| Ribonuclease H [Clostridium lentocellum DSM 5427]
          Length = 254

 Score =  227 bits (580), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 80/202 (39%), Positives = 120/202 (59%), Gaps = 11/202 (5%)

Query: 11  HFELEAMVRE----------KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
            +E E  + +           N + + GIDEVGRG LAGPVV AA+IL  +    G+ DS
Sbjct: 46  TYENELALWQLKCEFDSIFHDNQYILVGIDEVGRGPLAGPVVAAAVILPYDTNLVGLKDS 105

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           KK++  KRE+LY++I S+A+ I I       ID+ NI +AT +A+ HA+  L++     L
Sbjct: 106 KKLTEPKREKLYDQIQSNALGIGIGIVDADRIDEINILQATFEAMRHALSELKIDYDRVL 165

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           +DG  +   +  +  A+I GD  S SIAAAS+IAKVTRDR+M+     Y  Y ++++ GY
Sbjct: 166 VDGDKVIPKIQIRQEAIIGGDDKSASIAAASVIAKVTRDRMMKAYANTYDKYDWENNKGY 225

Query: 180 PTAKHQQVIKEKGPSCIHRLTF 201
            + KH + I+  G + +HR +F
Sbjct: 226 GSQKHYEAIRNYGITPLHRKSF 247


>gi|331269647|ref|YP_004396139.1| ribonuclease H [Clostridium botulinum BKT015925]
 gi|329126197|gb|AEB76142.1| ribonuclease H [Clostridium botulinum BKT015925]
          Length = 269

 Score =  227 bits (580), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 79/183 (43%), Positives = 105/183 (57%), Gaps = 7/183 (3%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKKREELYEKITSSA 79
            +AG DEVGRG LAGP+V AA+ILD      + +   INDSKKI  + REEL E I   A
Sbjct: 80  YLAGCDEVGRGPLAGPIVAAAVILDLEFANNDKLILKINDSKKIKPELREELAEIIKEKA 139

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           I   ++   +  ID   I     + +  +V  L+V P   L DG  I ++       V+K
Sbjct: 140 IAYCVAEIDNSEIDNKGIAWCNNEVLQRSVNGLKVKPDLVLSDGYKI-KNCSIDNKFVVK 198

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD+ S SIA ASIIAKV RD+LM+   + Y DY FD ++GY T +H   IK+ G + IHR
Sbjct: 199 GDAKSASIACASIIAKVYRDKLMQKYSEIYKDYAFDKNMGYGTKEHIDSIKKYGCTPIHR 258

Query: 199 LTF 201
            +F
Sbjct: 259 KSF 261


>gi|166031980|ref|ZP_02234809.1| hypothetical protein DORFOR_01682 [Dorea formicigenerans ATCC
           27755]
 gi|166028433|gb|EDR47190.1| hypothetical protein DORFOR_01682 [Dorea formicigenerans ATCC
           27755]
          Length = 219

 Score =  227 bits (580), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 93/192 (48%), Positives = 122/192 (63%), Gaps = 6/192 (3%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            FE E     K+   + GIDEVGRG LAGPVV  A+IL  +++   +NDSKK+S KKRE 
Sbjct: 28  TFEEE----YKDYPYICGIDEVGRGPLAGPVVAGAVILPKDDMILYLNDSKKLSEKKREM 83

Query: 71  LYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY++I + A+   I  AS   ID+ NI +AT +A+  A++NL+V P   L D  +IP+ +
Sbjct: 84  LYDEIMNRAVATGIGMASPARIDEINILQATYEAMRMAIDNLKVRPDILLNDAVTIPQ-V 142

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                 +IKGD+ S+SIAAASIIAKVTRDRLM    K  P Y F S+ GY T  H   +K
Sbjct: 143 DILQVPIIKGDAKSISIAAASIIAKVTRDRLMVEYDKVLPGYDFASNKGYGTKAHIAGLK 202

Query: 190 EKGPSCIHRLTF 201
           E GP+ IHR +F
Sbjct: 203 ELGPTPIHRRSF 214


>gi|255534413|ref|YP_003094784.1| Ribonuclease HII [Flavobacteriaceae bacterium 3519-10]
 gi|255340609|gb|ACU06722.1| Ribonuclease HII [Flavobacteriaceae bacterium 3519-10]
          Length = 218

 Score =  227 bits (580), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 71/177 (40%), Positives = 106/177 (59%), Gaps = 1/177 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DEVGRG L GPVV AA+ILD   +   ++DSKK++ K R  L   I  +    +++ 
Sbjct: 26  AGCDEVGRGCLCGPVVAAAVILDEKFVQNLVDDSKKLNFKTRIYLDAYIKDNVKEYAVAE 85

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
               +ID+HNI  A++ A++ A++ LQ  P   L+DG             +IKGD+  LS
Sbjct: 86  LPPSHIDEHNILNASIHAMHRALDQLQTRPELILVDGNRFHPYNFIPHQCIIKGDASILS 145

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           IA ASI+AK  RD+LM   H ++P YG+ +++GY T +H++ +   GP+  HR +FR
Sbjct: 146 IACASILAKNYRDQLMIKLHDEFPHYGWKTNMGYATKEHREALNRYGPTEHHRRSFR 202


>gi|237756157|ref|ZP_04584727.1| ribonuclease HII [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691683|gb|EEP60721.1| ribonuclease HII [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 197

 Score =  227 bits (580), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 79/188 (42%), Positives = 113/188 (60%), Gaps = 3/188 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +  +    + GIDE GRG LAGP+V+A++I   +  PF  +DSK +S K+RE L+EK
Sbjct: 5   EKELFSQGYEKIVGIDEAGRGPLAGPLVIASVIFPKHQKPFIHSDSKGLSEKEREYLFEK 64

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   A  I+I+   +  IDK  I  A    + + +++L+     AL+D   + E +    
Sbjct: 65  IHDYAEEINITIIENTEIDKLGISNAAKIYMENNLKSLKSKWDIALVDFVKLDESI--NH 122

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGD IS +IAAASIIAKV RDR+M    +KYP++ FD H GY T +H Q IK+ G 
Sbjct: 123 LPLIKGDEISHTIAAASIIAKVVRDRIMIEYKEKYPNFSFDKHKGYATKQHYQEIKKFGI 182

Query: 194 SCIHRLTF 201
           + IHR +F
Sbjct: 183 TPIHRRSF 190


>gi|284008506|emb|CBA75018.1| ribonuclease HII [Arsenophonus nasoniae]
          Length = 174

 Score =  227 bits (580), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 74/168 (44%), Positives = 100/168 (59%), Gaps = 2/168 (1%)

Query: 41  VVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKA 99
           +V AA+ILDP     G+ DSKK++ K+R  L  +I   A+  SI  A  + IDK NI +A
Sbjct: 1   MVTAAVILDPKQPIIGLADSKKLTEKRRNALCIEILDKALCWSIGRAEPEEIDKINILQA 60

Query: 100 TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR 159
           T  A+  AV  L   P   L+DG   P   P  + A+IKGDS+   I+AASI+AKVTRDR
Sbjct: 61  TFLAMRRAVAGLTTRPDIVLVDGNKSP-GFPVPSQAIIKGDSLVQEISAASILAKVTRDR 119

Query: 160 LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
            MR     +P+YGF  H GYPTA H + + + G +  HR +F P+R +
Sbjct: 120 EMRELDILFPEYGFAQHKGYPTAFHLEKLAQHGATQFHRKSFAPVRRV 167


>gi|242277680|ref|YP_002989809.1| ribonuclease H [Desulfovibrio salexigens DSM 2638]
 gi|242120574|gb|ACS78270.1| Ribonuclease H [Desulfovibrio salexigens DSM 2638]
          Length = 218

 Score =  227 bits (580), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 73/185 (39%), Positives = 105/185 (56%), Gaps = 7/185 (3%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AGIDE GRG LAGPVV  A+IL       G+ DSKK+    R+ L  +I   A+  ++  
Sbjct: 17  AGIDEAGRGCLAGPVVAGAVILPEEYDLPGLTDSKKLDEAARDRLAVEIKKQAVCWALGV 76

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED------LPCQAFAVIKG 139
           +  Q +D+ NI +AT  A+  +V +L+V P+  ++DG               +  AV+KG
Sbjct: 77  SRAQVVDQINILQATFRAMGRSVLHLKVKPQMLMVDGNKTIPAPHLNGVAGFRQEAVVKG 136

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D    +I+AASI+AK  RD+LM    K+Y  YGF+ H GY T  H   +KE GP  +HR+
Sbjct: 137 DLKIPAISAASILAKTFRDKLMVQLAKRYAAYGFEIHKGYGTKVHLDALKEHGPCAVHRM 196

Query: 200 TFRPL 204
           TF+ +
Sbjct: 197 TFKGV 201


>gi|188996137|ref|YP_001930388.1| Ribonuclease H [Sulfurihydrogenibium sp. YO3AOP1]
 gi|229564299|sp|B2V752|RNH2_SULSY RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|188931204|gb|ACD65834.1| Ribonuclease H [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 197

 Score =  227 bits (580), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 79/188 (42%), Positives = 112/188 (59%), Gaps = 3/188 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E  +  +    + GIDE GRG LAGP+V+A++I   +  PF   DSK +S K+RE L+EK
Sbjct: 5   EKELFSQGYEKIVGIDEAGRGPLAGPLVIASVIFPKHQKPFIHTDSKGLSEKEREYLFEK 64

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   A  I+I+   +  IDK  I  A    + + +++L+     AL+D   + E +    
Sbjct: 65  IHDYAEEINITIVENTEIDKFGISNAAKIYMENNLKSLKSKWDIALVDFVKLDESI--NH 122

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGD IS +IAAASIIAKV RDR+M    +KYP++ FD H GY T +H Q IK+ G 
Sbjct: 123 LPLIKGDEISHTIAAASIIAKVVRDRIMIEYKEKYPNFSFDKHKGYATKQHYQEIKKFGI 182

Query: 194 SCIHRLTF 201
           + IHR +F
Sbjct: 183 TPIHRRSF 190


>gi|110639206|ref|YP_679415.1| RNase HII [Cytophaga hutchinsonii ATCC 33406]
 gi|123163320|sp|Q11R91|RNH2_CYTH3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|110281887|gb|ABG60073.1| RNase HII [Cytophaga hutchinsonii ATCC 33406]
          Length = 202

 Score =  227 bits (580), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 77/187 (41%), Positives = 115/187 (61%), Gaps = 5/187 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG +AGPVV AA+IL PN     +NDSKK++ K+RE L + I   A+   ++ 
Sbjct: 16  AGLDEAGRGCMAGPVVAAAVILPPNYKHSLLNDSKKLTIKQRELLRQDIIRDALDYHVAE 75

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQ-VIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            SH  ID+ NI  AT+ A++ AV+ L+   P   LIDG    +    +   +++GD + L
Sbjct: 76  VSHTVIDQINILNATMKAMHKAVKGLKKQQPNLLLIDGNRFKQYTGIEHVCIVQGDGLYL 135

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT--FR 202
           SIAAAS++AK  RD LM    K++P+YG+D + GY T KH+  ++  G +  HR +  F+
Sbjct: 136 SIAAASVLAKTHRDSLMERLAKEHPEYGWDVNAGYATEKHRLAMETHGLTPYHRTSFHFK 195

Query: 203 PLRNLSV 209
           P + L +
Sbjct: 196 P-KQLDL 201


>gi|289662893|ref|ZP_06484474.1| ribonuclease HII [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 242

 Score =  227 bits (579), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 82/184 (44%), Positives = 118/184 (64%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-I 81
             VAG+DE GRG LAGPV VAA++ DP+     G++DSK+++ ++RE+LY +I   A+  
Sbjct: 31  RLVAGVDEAGRGPLAGPVAVAAVVFDPSKPRINGLDDSKQLTAERREQLYARIVDRALAW 90

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           S+     + ID+ NI++AT+  +  AVE +  +   A IDG  +P+ LPC A A+I GD+
Sbjct: 91  SVVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDA 150

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +  +I AASI+AKVTRDRLM   H ++P Y FD H GY T  H   ++  GP   HR +F
Sbjct: 151 LDRAIMAASIVAKVTRDRLMHALHAQHPQYRFDQHKGYSTPVHLAALQTHGPCPQHRRSF 210

Query: 202 RPLR 205
            P+R
Sbjct: 211 APVR 214


>gi|303327966|ref|ZP_07358405.1| ribonuclease HII [Desulfovibrio sp. 3_1_syn3]
 gi|302861792|gb|EFL84727.1| ribonuclease HII [Desulfovibrio sp. 3_1_syn3]
          Length = 230

 Score =  227 bits (579), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 80/207 (38%), Positives = 108/207 (52%), Gaps = 14/207 (6%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F  E +   +   PVAGIDE GRG LAGPVV AA+IL       G+ DSK +S K R+ L
Sbjct: 11  FGPEDIPFGRRSGPVAGIDEAGRGCLAGPVVAAAVILPAVYELPGLTDSKALSAKARDIL 70

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL- 129
             +I   A+   +     + I++ NI +AT +A+  AV  L++ P   LIDG  +  D  
Sbjct: 71  APRIRECALAWGLGVVWPRRIERINILQATFEAMSRAVGVLRLTPGRLLIDGNKVLPDAV 130

Query: 130 ------------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                       P    AV+ GD     I+AASI+AK  RDRLM    +++P YG + H 
Sbjct: 131 LTLFWRTGHTAPPPLQQAVVGGDKSEDVISAASILAKTFRDRLMLHLGRRWPGYGLEEHK 190

Query: 178 GYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           GY T  H   ++  GP   HRLTFR +
Sbjct: 191 GYGTKAHYAALRRLGPCPQHRLTFRGV 217


>gi|329942999|ref|ZP_08291773.1| ribonuclease HII family protein [Chlamydophila psittaci Cal10]
 gi|332287581|ref|YP_004422482.1| ribonuclease HII [Chlamydophila psittaci 6BC]
 gi|313848155|emb|CBY17156.1| ribonuclease HII [Chlamydophila psittaci RD1]
 gi|325506940|gb|ADZ18578.1| ribonuclease HII [Chlamydophila psittaci 6BC]
 gi|328814546|gb|EGF84536.1| ribonuclease HII family protein [Chlamydophila psittaci Cal10]
 gi|328914832|gb|AEB55665.1| ribonuclease HII [Chlamydophila psittaci 6BC]
          Length = 212

 Score =  227 bits (579), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 88/196 (44%), Positives = 120/196 (61%), Gaps = 4/196 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E  V  +    +AGIDEVGRG LAGPVV AA IL    +  G+NDSKK++ K+R ++ +
Sbjct: 18  FEEEVFREGFSLIAGIDEVGRGPLAGPVVAAACILPRGKVFAGVNDSKKLTPKERGKIRD 77

Query: 74  KITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            + +       +   S + ID+ NI +AT +A+  A+ NL + P   L+DG  +P  +PC
Sbjct: 78  ILVNDPEVYYGLGVVSVERIDEINILEATKEAMAVAIANLPIHPDFLLVDGLHLPHKIPC 137

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   +I+GDS S SIAAASIIAK  RD LMR  H+ YP+YGFD H GY TA H   +K  
Sbjct: 138 K--KIIQGDSKSASIAAASIIAKEYRDDLMRELHQLYPNYGFDKHKGYGTAAHLAALKAF 195

Query: 192 GPSCIHRLTFRPLRNL 207
           GP   HR +F P+R +
Sbjct: 196 GPCDCHRKSFAPVRQV 211


>gi|320449238|ref|YP_004201334.1| ribonuclease HII [Thermus scotoductus SA-01]
 gi|320149407|gb|ADW20785.1| ribonuclease HII [Thermus scotoductus SA-01]
          Length = 205

 Score =  227 bits (579), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 81/192 (42%), Positives = 108/192 (56%), Gaps = 6/192 (3%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
           LEA      +  VAG+DE GRGA AGP+VV A+IL P   PF   DSK +  K+RE L E
Sbjct: 8   LEASFWSLGLR-VAGVDEAGRGAWAGPIVVGAVILPPGRYPF--RDSKLLRPKERERLAE 64

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           ++   A+  ++  A    +D+  + KATL A   A++ L   P + + D   +   LP  
Sbjct: 65  EVRRVALAYALGVAEVGEVDRLGVLKATLLAAQRALDLLDPPPEALVTDYLQVATSLPL- 123

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             A  K D  S S+AAASI+AKV RDRLM    + YP YGF  H GY T +HQ+ +   G
Sbjct: 124 -LAPPKADQNSPSVAAASILAKVHRDRLMVELDRLYPGYGFARHKGYGTPEHQEALLVLG 182

Query: 193 PSCIHRLTFRPL 204
           PS +HR  F P+
Sbjct: 183 PSPVHRRCFAPV 194


>gi|187778966|ref|ZP_02995439.1| hypothetical protein CLOSPO_02561 [Clostridium sporogenes ATCC
           15579]
 gi|187772591|gb|EDU36393.1| hypothetical protein CLOSPO_02561 [Clostridium sporogenes ATCC
           15579]
          Length = 269

 Score =  227 bits (579), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 85/188 (45%), Positives = 118/188 (62%), Gaps = 6/188 (3%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEK 74
           R  N + +AG+DEVGRG LAGP+V AA++LD N    +    I DSKK+S KKREEL   
Sbjct: 78  RYGNSYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMHRILNIKDSKKLSEKKREELDII 137

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI  +I+   ++ ID+  I  +  + +  AVE L V P   L DG ++ ++L  + 
Sbjct: 138 IREKAISYNIALVDNRTIDERGIAWSNNEVLKRAVEGLNVKPDLVLSDGYAV-KNLNIRN 196

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGDS S+SIA+ASIIAKV RD +M+   K+   YGF+ + GY T +H Q IK+ G 
Sbjct: 197 EFIIKGDSKSVSIASASIIAKVYRDNMMKEYSKELSMYGFNHNAGYGTEEHIQAIKKYGT 256

Query: 194 SCIHRLTF 201
           S IHR++F
Sbjct: 257 SKIHRMSF 264


>gi|167768005|ref|ZP_02440058.1| hypothetical protein CLOSS21_02548 [Clostridium sp. SS2/1]
 gi|167710334|gb|EDS20913.1| hypothetical protein CLOSS21_02548 [Clostridium sp. SS2/1]
 gi|291561007|emb|CBL39807.1| Ribonuclease HII [butyrate-producing bacterium SSC/2]
          Length = 218

 Score =  227 bits (579), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 88/191 (46%), Positives = 115/191 (60%), Gaps = 4/191 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F  E      N   + GIDEVGRG  AGPVV AA+IL  +     +NDSKK+S KKRE L
Sbjct: 26  FSFEREY--GNHQAICGIDEVGRGPFAGPVVAAAVILPKDCDILYLNDSKKLSEKKRELL 83

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y++I   A+ I I  +S + ID+ NI +AT  A+  A+  L + P   L D  +IP D+ 
Sbjct: 84  YDEIYEKAVAIGIGMSSEEVIDEINILQATYKAMQQAISKLSIKPDLLLNDAVTIP-DVE 142

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            +   +IKGD+ S SIAAASI+AKVTRDR+M+     YP Y F  + GY T  H + IK+
Sbjct: 143 IEQIPIIKGDAKSASIAAASIVAKVTRDRMMKEYDIIYPGYDFAKNKGYGTKAHIEGIKK 202

Query: 191 KGPSCIHRLTF 201
           +G   IHR TF
Sbjct: 203 QGICDIHRRTF 213


>gi|237738859|ref|ZP_04569340.1| ribonuclease HII [Fusobacterium sp. 2_1_31]
 gi|229423962|gb|EEO39009.1| ribonuclease HII [Fusobacterium sp. 2_1_31]
          Length = 217

 Score =  227 bits (579), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 84/191 (43%), Positives = 116/191 (60%), Gaps = 7/191 (3%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKIT 76
           + +     V G+DE GRG LAGPVV AA+IL   +     INDSKK++ KKRE+LY+ I 
Sbjct: 7   LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKQYSEELDEINDSKKLTEKKREKLYDIIL 66

Query: 77  SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR-----SALIDGRSIPEDLPC 131
           ++  +++  AS + IDK NI  A   A+  A+++L+           L+DG    ++   
Sbjct: 67  NNFNVAVGIASVEEIDKLNILNADFLAMRRALKDLEKFHEVDKDYIVLVDGNLKIKEYEG 126

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   V+KGD+ SLSIAAASIIAKVTRDR+M+    KYPDY F+ + GY T KH + IK K
Sbjct: 127 KQLPVVKGDAKSLSIAAASIIAKVTRDRIMKDLGLKYPDYDFEKNKGYGTKKHVEAIKTK 186

Query: 192 GPSC-IHRLTF 201
           G    +HR  F
Sbjct: 187 GVLKNVHRKVF 197


>gi|296136565|ref|YP_003643807.1| Ribonuclease H [Thiomonas intermedia K12]
 gi|295796687|gb|ADG31477.1| Ribonuclease H [Thiomonas intermedia K12]
          Length = 214

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 82/184 (44%), Positives = 115/184 (62%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG DEVGRG  AGPVV AA++LDP +   G+ DSK +S ++REEL  +I + ++  SI
Sbjct: 17  LIAGCDEVGRGPWAGPVVAAAVVLDPAHPIAGLADSKLLSARRREELDAQIRAHSLGWSI 76

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + +S + ID+ NI +ATL A+  AV  L       L+DG   P+ +     A++ GD+  
Sbjct: 77  AESSVEEIDQRNILQATLLAMQRAVAALPCKIDLLLVDGNQTPQ-VAMPCRAIVGGDAAE 135

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASIIAKV RDRLM    ++YP YGF+ H GY TA H+  +   GP   HR +F P
Sbjct: 136 PAISAASIIAKVYRDRLMAELAQRYPGYGFERHSGYGTAAHRAALLTLGPCAEHRRSFAP 195

Query: 204 LRNL 207
           +R L
Sbjct: 196 IRRL 199


>gi|291294813|ref|YP_003506211.1| ribonuclease H [Meiothermus ruber DSM 1279]
 gi|290469772|gb|ADD27191.1| Ribonuclease H [Meiothermus ruber DSM 1279]
          Length = 215

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 80/208 (38%), Positives = 109/208 (52%), Gaps = 17/208 (8%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREE 70
            LE+   +  +  VAG+DE GRGALAGPVV AA+IL P   P      DSK ++ + RE 
Sbjct: 3   ALESDWWKLGLR-VAGVDEAGRGALAGPVVAAAVILPPPKEPALYPFRDSKTLTPRAREH 61

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L E++ + A+   +  A    ID+  I +AT  A   A+E L+V P + L D   + ++ 
Sbjct: 62  LAEQVRAVALAWGVGWAEVAEIDRLGILRATHLAAARALEQLKVSPEALLTDYLRLEQEW 121

Query: 130 -------------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
                        P    A  K D  S ++AAASI+AKV RDR M    ++YP YGF  H
Sbjct: 122 QQYLRNNPSRPDAPHLLRAPPKADRHSPTVAAASILAKVARDRYMEALEQRYPGYGFAQH 181

Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            GY T  H + +K  GP   HR TF P+
Sbjct: 182 KGYGTTLHLRALKALGPCGAHRRTFAPV 209


>gi|218283550|ref|ZP_03489540.1| hypothetical protein EUBIFOR_02130 [Eubacterium biforme DSM 3989]
 gi|218215818|gb|EEC89356.1| hypothetical protein EUBIFOR_02130 [Eubacterium biforme DSM 3989]
          Length = 202

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 77/196 (39%), Positives = 110/196 (56%), Gaps = 5/196 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
           LE    ++N   V G+DE GRG +AGP++VA +I         I+DSKK+S KKRE L++
Sbjct: 6   LEHDYWDQN-QSVLGMDEAGRGPIAGPLMVAGVIFPKGYHNELIDDSKKLSEKKREALFK 64

Query: 74  KITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I   A+   I     + IDK NI++AT +A+       +      L D   +P D+   
Sbjct: 65  TIIQDALYYQILVVDEKTIDKKNIYRATQEAMMEIAN--KAQCDFVLSDAMPLP-DIDKP 121

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             A++KGD  SLSIAAASI+AKVTRDR M+   + YP YG   H GYPT  H + + + G
Sbjct: 122 FQAIVKGDQKSLSIAAASILAKVTRDRWMKKLDEMYPQYGLAKHKGYPTKAHIEALNQYG 181

Query: 193 PSCIHRLTFRPLRNLS 208
               +R ++ P++ L 
Sbjct: 182 LQDFYRRSYGPVKKLE 197


>gi|15643677|ref|NP_228723.1| ribonuclease HII [Thermotoga maritima MSB8]
 gi|7227928|sp|Q9X017|RNH2_THEMA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|4981451|gb|AAD35996.1|AE001755_19 ribonuclease HII [Thermotoga maritima MSB8]
          Length = 238

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 82/198 (41%), Positives = 108/198 (54%), Gaps = 18/198 (9%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGP-------VVVAAIILDPNNIPFGINDSKKISHKKRE 69
            + +K    VAG+DE GRG LAGP       +              GINDSK++S  KRE
Sbjct: 5   ELYKKEFGIVAGVDEAGRGCLAGPVVAAAVVL---------EKEIEGINDSKQLSPAKRE 55

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L ++I   A + I  AS + ID +NI  AT  A+  A+ENL V P   L+DG+ I  +L
Sbjct: 56  RLLDEIMEKAAVGIGIASPEEIDLYNIFNATKLAMNRALENLSVKPSFVLVDGKGI--EL 113

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                 ++KGD  S  I AASI+AKV RDRLM   H+ YP + F  H GY T +H   I+
Sbjct: 114 SVPGTCLVKGDQKSKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKHKGYATKEHLNEIR 173

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + G   IHRL+F P+  L
Sbjct: 174 KNGVLPIHRLSFEPVLEL 191


>gi|148269157|ref|YP_001243617.1| ribonuclease HII [Thermotoga petrophila RKU-1]
 gi|170287819|ref|YP_001738057.1| ribonuclease H [Thermotoga sp. RQ2]
 gi|281411455|ref|YP_003345534.1| Ribonuclease H [Thermotoga naphthophila RKU-10]
 gi|166226666|sp|A5IIL8|RNH2_THEP1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|238688861|sp|B1LC19|RNH2_THESQ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|147734701|gb|ABQ46041.1| RNase HII [Thermotoga petrophila RKU-1]
 gi|170175322|gb|ACB08374.1| Ribonuclease H [Thermotoga sp. RQ2]
 gi|281372558|gb|ADA66120.1| Ribonuclease H [Thermotoga naphthophila RKU-10]
          Length = 238

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 83/198 (41%), Positives = 109/198 (55%), Gaps = 18/198 (9%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGP-------VVVAAIILDPNNIPFGINDSKKISHKKRE 69
            + +K    VAG+DE GRG LAGP       +              GINDSK++S  KRE
Sbjct: 5   ELYKKEFGIVAGVDEAGRGCLAGPVVAAAVVL---------EKEIEGINDSKQLSPAKRE 55

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L+++I   A + I  AS + ID HNI  AT  A+  A+ENL V P   L+DG+ I  +L
Sbjct: 56  RLFDEIMGKAAVGIGIASPEEIDLHNIFNATKLAMNRALENLSVGPSFVLVDGKGI--EL 113

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                 ++KGD  S  I AASI+AKV RDRLM   HK YP + F  H GY T +H   I+
Sbjct: 114 RVPGTCLVKGDQKSKLIGAASIVAKVFRDRLMSEFHKMYPQFSFHKHKGYATKEHLNEIR 173

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + G   IHR++F P+  L
Sbjct: 174 KNGVLPIHRMSFEPVLEL 191


>gi|255319657|ref|ZP_05360866.1| ribonuclease HII [Acinetobacter radioresistens SK82]
 gi|262378546|ref|ZP_06071703.1| ribonuclease HII [Acinetobacter radioresistens SH164]
 gi|255303274|gb|EET82482.1| ribonuclease HII [Acinetobacter radioresistens SK82]
 gi|262299831|gb|EEY87743.1| ribonuclease HII [Acinetobacter radioresistens SH164]
          Length = 191

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 77/192 (40%), Positives = 107/192 (55%), Gaps = 19/192 (9%)

Query: 26  VAGIDEVGRGALAGPVVVAAI---------ILDPNNIPFGINDSKKISHKKREELYEKIT 76
           +AG+DE GRG L                  ILDP     G+NDSKK++ KKRE+L+ +I 
Sbjct: 3   IAGVDEAGRGPL---------VGAVVAAAVILDPARPIEGLNDSKKLTEKKREKLFVEIQ 53

Query: 77  SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135
             A+   I+ AS   ID+ NI +A+L A+  AVE L + P   L+DG   P  L     A
Sbjct: 54  EKALAWYIAEASATEIDEINILQASLLAMRRAVEGLSIQPDKVLVDGNKEPAGLQMSCEA 113

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           V+ GD++   I+AASI+AKV RDR M +  ++YP YGF  H GYPT  H + I   G   
Sbjct: 114 VVGGDALYQEISAASILAKVARDRQMVLLDQRYPHYGFAKHKGYPTKAHFEAIGIHGVID 173

Query: 196 IHRLTFRPLRNL 207
            HR ++ P++ +
Sbjct: 174 EHRRSYAPVKKV 185


>gi|262067279|ref|ZP_06026891.1| ribonuclease HII [Fusobacterium periodonticum ATCC 33693]
 gi|291379005|gb|EFE86523.1| ribonuclease HII [Fusobacterium periodonticum ATCC 33693]
          Length = 217

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 84/191 (43%), Positives = 117/191 (61%), Gaps = 7/191 (3%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKIT 76
           + +     V G+DE GRG LAGPVV AA+IL   +     INDSKK++ KKRE+LY+ I 
Sbjct: 7   LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKQYSEELDEINDSKKLTEKKREKLYDIIL 66

Query: 77  SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPC 131
           ++  +++  AS + IDK NI  A   A+  A+++L+    +      L+DG    ++   
Sbjct: 67  NNFNVAVGIASVEEIDKLNILNADFLAMRRALKDLEKFHEANKDYIVLVDGNLKIKEYEG 126

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   V+KGD+ SLSIAAASIIAKVTRDR+M+    KYPDY F+ + GY T KH + IK K
Sbjct: 127 KQLPVVKGDAKSLSIAAASIIAKVTRDRIMKGLGLKYPDYDFEKNKGYGTKKHVEAIKTK 186

Query: 192 GPSC-IHRLTF 201
           G    +HR  F
Sbjct: 187 GVLKNVHRKVF 197


>gi|111023503|ref|YP_706475.1| ribonuclease HII [Rhodococcus jostii RHA1]
 gi|122955111|sp|Q0S2B9|RNH2_RHOSR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|110823033|gb|ABG98317.1| ribonuclease H [Rhodococcus jostii RHA1]
          Length = 226

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 77/197 (39%), Positives = 115/197 (58%), Gaps = 4/197 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREEL 71
           +E+ +    + PVAG+DE GRGA AGP+VVAA +L P   P    ++DSKK++ + REEL
Sbjct: 19  MESALVRSGLGPVAGVDEAGRGACAGPLVVAACVLAPKPYPALARLDDSKKLTERTREEL 78

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  IT  A+  S+ S   + +D+  +H A ++ +  AV  L   P   L DG  +P  LP
Sbjct: 79  FPAITRLAVAWSVVSFPAEEVDRMGVHVANIEGMRRAVAGLSTTPGYVLTDGFRVP-GLP 137

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD+ +  IAAAS++AKV+RDR+M    + +P YGF  H GY T  H   +++
Sbjct: 138 APSLPVIGGDAAAACIAAASVLAKVSRDRVMVAMDETHPGYGFAIHKGYNTPAHLTALEK 197

Query: 191 KGPSCIHRLTFRPLRNL 207
            GP   HR ++  +  L
Sbjct: 198 LGPCPEHRRSWSNVAAL 214


>gi|296284404|ref|ZP_06862402.1| ribonuclease HII [Citromicrobium bathyomarinum JL354]
          Length = 212

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 73/188 (38%), Positives = 107/188 (56%), Gaps = 9/188 (4%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
            V G+DE GRG LAGPVV +A+ L     P G++DSKK+   KR  L E++       ++
Sbjct: 19  LVVGVDEAGRGPLAGPVVASAVALCKPR-PAGLDDSKKLGALKRSALDEQVRRRCAWGVA 77

Query: 85  SASHQYIDKHNIHKATLDAIYHAV----ENLQVIPRSALIDGRSIP----EDLPCQAFAV 136
               + ID+ NI  AT+ A+  AV    + +   P   L+DG   P    E     A A+
Sbjct: 78  VVEPEEIDRLNIFGATMLAMTLAVTRVAQAMGRAPDMVLVDGNLTPSGRCEGWCWPARAI 137

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           + GD+   +I+AASI+AK  RDRLM  A ++YP YG++ + GY TA+H   ++E GP  +
Sbjct: 138 VGGDAKEPAISAASIVAKEWRDRLMIAAAREYPHYGWERNKGYGTAEHLSALREHGPCAL 197

Query: 197 HRLTFRPL 204
           HR +F P+
Sbjct: 198 HRRSFAPV 205


>gi|296394368|ref|YP_003659252.1| ribonuclease H [Segniliparus rotundus DSM 44985]
 gi|296181515|gb|ADG98421.1| Ribonuclease H [Segniliparus rotundus DSM 44985]
          Length = 221

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 72/195 (36%), Positives = 107/195 (54%), Gaps = 4/195 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREE 70
             EA +R      VAG+DE GRGA AGP+VVA+ +L P       G++DSK+++ +KRE 
Sbjct: 23  AFEAALRRAGYTSVAGVDEAGRGACAGPLVVASCVLKPRSARALPGLDDSKRLTAQKREW 82

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L  +I   ++   +       +D   +H+A L+ +  AV  L   P   L+DG  +P  +
Sbjct: 83  LEPRIREQSLGWHVVVMPPAEVDAMGVHQANLEGMRRAVAGLAQPPDYVLMDGFDVP-GM 141

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P  A  V+ GD +   IAAAS++AKV RDR+M    +    YGF +H GY TA H   + 
Sbjct: 142 PSPAQRVVGGDRLVACIAAASVLAKVARDRIMVALDQSRSGYGFAAHKGYCTAAHMSALA 201

Query: 190 EKGPSCIHRLTFRPL 204
           + GP   HR ++ P+
Sbjct: 202 QFGPCEHHRYSYAPV 216


>gi|296536589|ref|ZP_06898669.1| ribonuclease H [Roseomonas cervicalis ATCC 49957]
 gi|296263085|gb|EFH09630.1| ribonuclease H [Roseomonas cervicalis ATCC 49957]
          Length = 205

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 87/209 (41%), Positives = 125/209 (59%), Gaps = 13/209 (6%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISH 65
            P + LE     +    VAG+DE GRG LAGPV+ AA++     P+ +   ++DSKK+S 
Sbjct: 1   MPDYTLELAAGGR----VAGVDEAGRGPLAGPVMAAAVMFHGAPPDTLAMLLDDSKKLSA 56

Query: 66  KKREELYEKITSSAIISI-----SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           +KRE  +  + ++A   +     ++AS   I + NI +AT  A++ AV  L  +P   L+
Sbjct: 57  EKREAAFAVLRAAARAGVLDYAIAAASAAEIGRLNILRATHLAMWRAVSRLPALPDLVLV 116

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG + P  LPC    V+KGDS+SLSIAAASI+AKVTRDR M     ++P YGF  H GYP
Sbjct: 117 DGNAAPR-LPCATRCVVKGDSLSLSIAAASILAKVTRDRAMIRLDGRWPGYGFARHAGYP 175

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209
           TA H+  +++ GP   HR  F P+  L++
Sbjct: 176 TAAHRAALEKLGPCPHHRRGFAPVDQLAL 204


>gi|188577177|ref|YP_001914106.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521629|gb|ACD59574.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 211

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 83/182 (45%), Positives = 119/182 (65%), Gaps = 2/182 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-ISI 83
           VAG+DE GRG LAGPV VAA++ DPN     G++DSK+++ ++RE+LY +I   A+  S+
Sbjct: 2   VAGVDEAGRGPLAGPVAVAAVVFDPNKPRINGLDDSKQLTAERREQLYARIVDRALSWSV 61

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
                + ID+ NI++AT+  +  AVE +  +   A IDG  +P+ LPC A A+I GD++ 
Sbjct: 62  VLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALD 121

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I AASI+AKVTRDRLM   H ++P+Y FD H GY T  H   ++  GP   HR +F P
Sbjct: 122 RAIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYSTPMHLAALQTHGPCPQHRRSFAP 181

Query: 204 LR 205
           +R
Sbjct: 182 VR 183


>gi|125624006|ref|YP_001032489.1| ribonuclease HII [Lactococcus lactis subsp. cremoris MG1363]
 gi|146345506|sp|O30415|RNH2_LACLM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|124492814|emb|CAL97769.1| RnhB protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070776|gb|ADJ60176.1| ribonuclease HII [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 257

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 81/197 (41%), Positives = 118/197 (59%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            E E  +  + +  +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKK+   K   +
Sbjct: 59  LEFEKELYSQEIELIAGIDEVGRGPLAGPVVTAAVILPKNCKIRGLNDSKKVPKSKHHAI 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
             +I   A+ I +     + ID+ NI++AT  A+  AV  L + P   LID   +  DLP
Sbjct: 119 LSEIQEKALAIGVGIVDAEKIDEVNIYEATKIAMIQAVSKLSLKPEHLLIDAMVL--DLP 176

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +I GD+ S SIAAASI+AKVTRD +M+    ++P+Y F+ + GY TAKH   + +
Sbjct: 177 IAQTKIIHGDARSASIAAASIVAKVTRDEMMKDFALEFPEYDFEHNAGYGTAKHLAALTK 236

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR ++ P++++
Sbjct: 237 YGITRIHRKSYEPIKSM 253


>gi|126434540|ref|YP_001070231.1| ribonuclease HII [Mycobacterium sp. JLS]
 gi|166226627|sp|A3PXW3|RNH2_MYCSJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|126234340|gb|ABN97740.1| RNase HII [Mycobacterium sp. JLS]
          Length = 239

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 80/197 (40%), Positives = 114/197 (57%), Gaps = 4/197 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE+ +    + PVAG+DEVGRGA AGP+VVAA +L PN +     ++DSKK+  K+RE L
Sbjct: 20  LESALYRNGLGPVAGVDEVGRGACAGPLVVAACVLGPNRLESLAALDDSKKLGEKERERL 79

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+   +       +D+  +H A ++ +  AV  L V P   L DG  +P  LP
Sbjct: 80  FPVIRRYALAYHVVFIPSGEVDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP-GLP 138

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  V+ GD+ +  IAAAS++AKV+RDRLM    +++P YGF  H GY T  H   + E
Sbjct: 139 MPSLPVVGGDAAAACIAAASVLAKVSRDRLMVAMEREHPGYGFAEHKGYSTPAHTAALAE 198

Query: 191 KGPSCIHRLTFRPLRNL 207
            GP   HR +F  +R L
Sbjct: 199 LGPCAQHRYSFINVRRL 215


>gi|169338113|ref|ZP_02622674.2| ribonuclease HII [Clostridium botulinum C str. Eklund]
 gi|169294134|gb|EDS76267.1| ribonuclease HII [Clostridium botulinum C str. Eklund]
          Length = 272

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 82/199 (41%), Positives = 114/199 (57%), Gaps = 8/199 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKI 63
           R  +E +          +AG DEVGRG LAGP+V A+++LD      +N+   INDSKKI
Sbjct: 68  RNMYEFDKKYINGG-TYLAGADEVGRGPLAGPIVAASVVLDLDTINDDNLILRINDSKKI 126

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           S + REEL + I   A+  SI   S++ IDK  I     + +  +V  L++ P   L DG
Sbjct: 127 SFEVREELSKIIRKRAVSYSIQEISNEEIDKKGIAWCNNEVLKRSVCELKISPDLVLSDG 186

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
             I ++       V+KGD+ S SIA ASIIAKV RD LM    K YP+Y F+ ++GY T 
Sbjct: 187 YKI-KNCTISNEFVVKGDAKSASIACASIIAKVYRDNLMIEYSKIYPEYMFNKNMGYGTK 245

Query: 183 KHQQVIKEKGPSCIHRLTF 201
           +H + IK+ G + IHR +F
Sbjct: 246 EHIEAIKKFGCTPIHRKSF 264


>gi|317498401|ref|ZP_07956696.1| ribonuclease HII [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894295|gb|EFV16482.1| ribonuclease HII [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 218

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 87/191 (45%), Positives = 115/191 (60%), Gaps = 4/191 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           F  E    +     + GIDEVGRG  AGPVV AA+IL  +     +NDSKK+S KKRE L
Sbjct: 26  FSFEREYGDH--QAICGIDEVGRGPFAGPVVAAAVILPKDCDILYLNDSKKLSEKKRELL 83

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y++I   A+ I I  +S + ID+ NI +AT  A+  A+  L + P   L D  +IP D+ 
Sbjct: 84  YDEIYEKAVAIGIGMSSEEVIDEINILQATYKAMQQAISKLSIKPDLLLNDAVTIP-DVE 142

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            +   +IKGD+ S SIAAASI+AKVTRDR+M+     YP Y F  + GY T  H + IK+
Sbjct: 143 IEQVPIIKGDAKSASIAAASIVAKVTRDRMMKEYDTIYPGYDFAKNKGYGTKAHIEGIKK 202

Query: 191 KGPSCIHRLTF 201
           +G   IHR TF
Sbjct: 203 QGICDIHRRTF 213


>gi|254304340|ref|ZP_04971698.1| ribonuclease H [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148324532|gb|EDK89782.1| ribonuclease H [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 217

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 83/190 (43%), Positives = 114/190 (60%), Gaps = 6/190 (3%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKIT 76
           + +     V G+DE GRG LAGPVV AA+IL         INDSKK++ KKRE+LY+ I 
Sbjct: 11  LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKEYTEELNEINDSKKLTEKKREKLYDIIM 70

Query: 77  SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS----ALIDGRSIPEDLPCQ 132
            +  +++  ++ + IDK NI  A   A+  A+ +L+ I        L+DG    ++   +
Sbjct: 71  KNFDVAVGISTVEEIDKLNILNADFLAMRRALNDLKNIKNEKEYTVLVDGNLKIKEYVGK 130

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
            F ++KGD+ SLSIAAASIIAKVTRDR M+     YPDY F+ H GY T  H +VIK+KG
Sbjct: 131 QFPIVKGDAKSLSIAAASIIAKVTRDRFMKDLASIYPDYCFEKHKGYGTKAHIEVIKDKG 190

Query: 193 PSC-IHRLTF 201
               +HR  F
Sbjct: 191 AIEGVHRKVF 200


>gi|300870469|ref|YP_003785340.1| ribonuclease HII [Brachyspira pilosicoli 95/1000]
 gi|300688168|gb|ADK30839.1| ribonuclease HII (RNase HII) [Brachyspira pilosicoli 95/1000]
          Length = 221

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 83/201 (41%), Positives = 116/201 (57%), Gaps = 7/201 (3%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD-PNNIPFGINDSKKISHKKREE 70
              E    +     + GIDEVGRG+L G V   A+I+   ++I    NDSKK++ KKREE
Sbjct: 15  LHYEKYYLDLGYKYICGIDEVGRGSLFGEVTACAVIMPLDDDIIKEANDSKKLTAKKREE 74

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY+ I   A+  S+ S +   IDK NI+ AT  A+  AVE L + P   LID   I  D 
Sbjct: 75  LYKIIIQKALSYSVYSVAANTIDKINIYNATKLAMLKAVEGLSIKPDILLIDAMKI--DT 132

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH---KKYPDYGFDSHVGYPTAKHQQ 186
             +  ++IKGD  S SIA ASI+AKV+RD+ M I     K+Y  Y    + GY T +H +
Sbjct: 133 EIKQESIIKGDLKSYSIACASIVAKVSRDKAMNILSEKNKEYDKYKISKNKGYGTKEHIE 192

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            IK+ G S +HRL+F P++++
Sbjct: 193 AIKKYGASDLHRLSFEPIKSI 213


>gi|94266071|ref|ZP_01289789.1| Ribonuclease H [delta proteobacterium MLMS-1]
 gi|93453354|gb|EAT03785.1| Ribonuclease H [delta proteobacterium MLMS-1]
          Length = 236

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 84/200 (42%), Positives = 118/200 (59%), Gaps = 6/200 (3%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
               E  +  +    VAG DE GRG LAGPVV A ++L  +       DSK++S  +R E
Sbjct: 18  TLAFERSLWAQGYRLVAGTDEAGRGPLAGPVVAACVVLPVDCRSP-FQDSKQLSASRRRE 76

Query: 71  LYEKITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPE 127
           L  ++ +   A + +  AS   ID  NI +A+L A+  AV  LQ  P   L+DG+ ++P 
Sbjct: 77  LEAELNALPGAAVGVGIASVAEIDGLNILQASLLAMRKAVTALQPPPDFLLVDGKFTVPL 136

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           +LP    A+IKGDS S SIAAASI+AK  RD+LM   H++YP Y F  H GY TA+H+++
Sbjct: 137 ELP--QQALIKGDSRSASIAAASIVAKERRDQLMADLHRQYPQYNFIQHKGYATAEHRRL 194

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           +   GP   HR +F+P+R L
Sbjct: 195 LHRFGPCPEHRRSFKPVREL 214


>gi|68536259|ref|YP_250964.1| ribonuclease HII [Corynebacterium jeikeium K411]
 gi|260578959|ref|ZP_05846862.1| ribonuclease HII [Corynebacterium jeikeium ATCC 43734]
 gi|97182389|sp|Q4JV11|RNH2_CORJK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|68263858|emb|CAI37346.1| rnhB [Corynebacterium jeikeium K411]
 gi|258602933|gb|EEW16207.1| ribonuclease HII [Corynebacterium jeikeium ATCC 43734]
          Length = 208

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 73/195 (37%), Positives = 109/195 (55%), Gaps = 5/195 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN---DSKKISHKKREE 70
           +E  +    + PVAG+DE GRGA  GP+ +AA IL  +    G++   DSKK++ K RE 
Sbjct: 1   MERELESAGLGPVAGVDEAGRGACCGPISIAACILPSDLDGVGLDRLTDSKKLTEKTRER 60

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           LY+ I   A+  SI   S + ID+  I  A +  +  AV  L V P   L D   +P  L
Sbjct: 61  LYDVIRDVAVSYSIIHISAEDIDRFGIQHANVSGMRRAVAALDVQPGYVLTDAVKVP-GL 119

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P     V+KGD ++  I+AAS++AKV+RDR++R   +++P YG  SH GY T  H   + 
Sbjct: 120 PMPHLPVVKGDQMAKCISAASVLAKVSRDRVLRTLDEEFPGYGLASHKGYGTKAHMTAVS 179

Query: 190 EKGPSCIHRLTFRPL 204
             G +  HR +++ +
Sbjct: 180 LHGGTPYHRYSYKNV 194


>gi|121533787|ref|ZP_01665614.1| Ribonuclease H [Thermosinus carboxydivorans Nor1]
 gi|121307778|gb|EAX48693.1| Ribonuclease H [Thermosinus carboxydivorans Nor1]
          Length = 265

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 84/196 (42%), Positives = 118/196 (60%), Gaps = 2/196 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +  E++  E+ +  +AG+DE GRG LAGPVVVAA+IL        +NDSKK+S  +R  L
Sbjct: 66  YLYESVFYEQGLDLIAGVDEAGRGPLAGPVVVAAVILPKRQHLPMLNDSKKLSPHQRSLL 125

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           YEKI  +A+ ++        ID  NI++ATL  +Y  +ENL   P+ ALID   +   + 
Sbjct: 126 YEKIIGTAVAVNHVVIPVCQIDSMNIYQATLQGMYRVLENLSPKPQVALIDAMPL-RKIV 184

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++I GD++S SIAAASI+AKV RDR M      YP YGF  H GY T +H   ++ 
Sbjct: 185 LPHMSIINGDALSASIAAASIVAKVVRDRYMDEMDVLYPGYGFAKHKGYATPEHLAALRR 244

Query: 191 KGPSCIHRLTFRPLRN 206
            GP  IHR +F P+++
Sbjct: 245 LGPCPIHRRSFEPIKS 260


>gi|254785187|ref|YP_003072615.1| ribonuclease HII [Teredinibacter turnerae T7901]
 gi|237686020|gb|ACR13284.1| ribonuclease HII [Teredinibacter turnerae T7901]
          Length = 191

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 85/185 (45%), Positives = 115/185 (62%), Gaps = 2/185 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82
             +AG+DEVGRG LAG VV AA++L  N+   G+ DSKK+S KKRE L+ +I   A    
Sbjct: 1   MIIAGVDEVGRGPLAGDVVAAAVVLGENHGIVGLADSKKLSEKKREALFVQIQQQAECFC 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+ AS   ID+ NI +A+L A+  AVE L++ P   L+DG  +P      A A++KGDS 
Sbjct: 61  IARASVAEIDEINILQASLLAMKRAVEGLKIEPEHVLVDGNRLPR-WRYSAEAIVKGDSK 119

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +I+AASI+AKVTRDR M     +YP YGF  H GYPT  H   +   G + IHR ++ 
Sbjct: 120 VEAISAASILAKVTRDREMVAFEAQYPGYGFAGHKGYPTKLHMDALARLGVTPIHRTSYA 179

Query: 203 PLRNL 207
           P++ L
Sbjct: 180 PVKAL 184


>gi|172040491|ref|YP_001800205.1| hypothetical protein cur_0811 [Corynebacterium urealyticum DSM
           7109]
 gi|171851795|emb|CAQ04771.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
          Length = 241

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 78/190 (41%), Positives = 110/190 (57%), Gaps = 4/190 (2%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREELYEKI 75
           +R      VAG+DE GRGA  GP+ +A+ IL  + +P   G+NDSKK++ K+RE L+  I
Sbjct: 33  LRFHGFSHVAGVDEAGRGACCGPITIASCILPDHGVPELAGLNDSKKLTPKRRERLFGAI 92

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
           T  A+   I       ID+  I  A ++ +Y  V  L V P   L D   +PE L C+  
Sbjct: 93  TEHAVAYEIVHIPAAEIDQRGIQYANINGMYRVVAGLGVEPDVVLTDAVHLPE-LACEHA 151

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            ++KGD++S +I+AASI+AKV+RDRLM    +KYP YG   H GY TAKH   ++  G  
Sbjct: 152 PLVKGDALSPAISAASILAKVSRDRLMVEMAEKYPGYGLAGHKGYGTAKHMAAVRLHGAC 211

Query: 195 CIHRLTFRPL 204
             HR T+  +
Sbjct: 212 PEHRYTYSNV 221


>gi|240170577|ref|ZP_04749236.1| ribonuclease HII [Mycobacterium kansasii ATCC 12478]
          Length = 239

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/198 (40%), Positives = 114/198 (57%), Gaps = 4/198 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE+ +    + PVAG+DEVGRGA AGP+VVAA +L PN +     ++DSKK++ K RE+L
Sbjct: 20  LESALHRSGLGPVAGVDEVGRGACAGPLVVAACVLGPNRLESLAALDDSKKLTEKAREKL 79

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+   +       +D+  +H A ++ +  AV  L V P   L DG  +P  LP
Sbjct: 80  FPLICRYALAYHVVFIPSVEVDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVP-GLP 138

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD+ +  IAAAS++AKV+RDRLM     +YP YGF  H GY T  H   +  
Sbjct: 139 MPSLPVIGGDAAAACIAAASVLAKVSRDRLMVAMDAQYPGYGFAEHKGYSTPAHTLALAR 198

Query: 191 KGPSCIHRLTFRPLRNLS 208
            GP   HR +F  +R ++
Sbjct: 199 LGPCPEHRYSFINVRRVA 216


>gi|189219283|ref|YP_001939924.1| Ribonuclease HII [Methylacidiphilum infernorum V4]
 gi|189186141|gb|ACD83326.1| Ribonuclease HII [Methylacidiphilum infernorum V4]
          Length = 226

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 73/202 (36%), Positives = 113/202 (55%), Gaps = 4/202 (1%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKRE 69
               E  +  K    +AGIDEVGRGA+AGPVV AA+IL  +      + DSK +  KKR+
Sbjct: 5   DLSYEKRLLTKGYRVIAGIDEVGRGAIAGPVVAAAVILPQDLPFHKYLKDSKAVEEKKRK 64

Query: 70  ELYEKITSSAIIS--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           ++ + +     IS  +  +  + I++ NIH + L A+  A+  L+  P   L+DG   P 
Sbjct: 65  QVVQWLLKEGRISFGLGFSFVEEIERINIHGSCLLAMRRAISCLEERPDILLVDGIFSPP 124

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            L   +  ++ GD+   SIAAAS++AKV+RD  M      YP+YG++ + GY TA H + 
Sbjct: 125 HLSIPSLTIVGGDAKVASIAAASLVAKVSRDGWMVKLSSLYPEYGWEKNKGYGTANHFES 184

Query: 188 IKEKGPSCIHRLTFRPLRNLSV 209
           ++ KG S  HR +F  ++ L +
Sbjct: 185 LRTKGLSPYHRKSF-LVKRLHL 205


>gi|295110185|emb|CBL24138.1| Ribonuclease HII [Ruminococcus obeum A2-162]
          Length = 251

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 88/205 (42%), Positives = 126/205 (61%), Gaps = 8/205 (3%)

Query: 8   ERPHFELEAMV----REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           E     +E M+    + +++  + GIDEVGRG LAGPVV  A+IL  ++    +NDSKK+
Sbjct: 49  EAEKLRMEQMMQYEHKYEHLGYLCGIDEVGRGPLAGPVVACAVILPADHQILYLNDSKKL 108

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           +  KREELY+ I   A+ + I       ID+ NI +AT +A+  A+  L+V P+  L D 
Sbjct: 109 TAHKREELYDVILREAVAVGIGMVGPAKIDEINILQATYEAMRQAISKLKVTPQLLLNDA 168

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
            +IP  +      +IKGD+ S SIAAASI+AKVTRDRLM    K  P YGF S+ GY + 
Sbjct: 169 VTIP-GVEVPQVPIIKGDAKSASIAAASIVAKVTRDRLMVEYDKTLPGYGFASNKGYGST 227

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207
           +H + +K+ GP+ IHR+TF  ++N 
Sbjct: 228 EHIEALKKFGPTPIHRVTF--IKNF 250


>gi|296327674|ref|ZP_06870216.1| ribonuclease H [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296155205|gb|EFG95980.1| ribonuclease H [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 213

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 81/186 (43%), Positives = 112/186 (60%), Gaps = 6/186 (3%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI 80
               V G+DE GRG LAGPVV AA+IL         INDSKK++ KKRE+LY+ I  +  
Sbjct: 15  EYKNVIGVDEAGRGPLAGPVVAAAVILKEYTEELDEINDSKKLTEKKREKLYDIIMKNFD 74

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS----ALIDGRSIPEDLPCQAFAV 136
           +++  ++ + IDK NI  A   A+  A+++L+ +        L+DG    ++   +   +
Sbjct: 75  VAVGISTVEEIDKLNILNADFLAMRRALKDLKSLKNEKEYTVLVDGNLKIKEYIGKQLPI 134

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC- 195
           +KGD+ SLSIAAASIIAKVTRDRLM+     YPDY F+ H GY T  H + IK+KG    
Sbjct: 135 VKGDAKSLSIAAASIIAKVTRDRLMKDLANIYPDYSFEKHKGYGTKTHIEAIKDKGAIEG 194

Query: 196 IHRLTF 201
           +HR  F
Sbjct: 195 VHRKVF 200


>gi|212703538|ref|ZP_03311666.1| hypothetical protein DESPIG_01583 [Desulfovibrio piger ATCC 29098]
 gi|212673038|gb|EEB33521.1| hypothetical protein DESPIG_01583 [Desulfovibrio piger ATCC 29098]
          Length = 211

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/195 (41%), Positives = 105/195 (53%), Gaps = 18/195 (9%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AGIDE GRG LAGPVV AA+IL       G+ DSK +S  +RE L   I   A+   +  
Sbjct: 2   AGIDEAGRGCLAGPVVAAAVILPEAYDLPGLTDSKALSAAQREHLAPLIRQCALAWGLGV 61

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS-IPE---------------DL 129
                ID+ NI +AT +A+  AV +L+  P   L+DG   +PE               DL
Sbjct: 62  VWPATIDRINILQATFEAMSRAVASLKRRPNLLLVDGNKTVPEPVLLPHWRKRHADATDL 121

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P +  AV+ GDS   +I+AAS++AK  RD LM    + +P YGF  H GY TA H + + 
Sbjct: 122 P-RQNAVVGGDSSVPAISAASVLAKTYRDMLMEHLDRHHPGYGFARHKGYGTADHYEALH 180

Query: 190 EKGPSCIHRLTFRPL 204
             GP   HRLTFR +
Sbjct: 181 RLGPCRQHRLTFRGV 195


>gi|31794078|ref|NP_856571.1| ribonuclease HII [Mycobacterium bovis AF2122/97]
 gi|39932282|sp|Q7TXM7|RNH2_MYCBO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|31619673|emb|CAD96613.1| PROBABLE RIBONUCLEASE HII PROTEIN RNHB (RNASE HII) [Mycobacterium
           bovis AF2122/97]
          Length = 264

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 79/198 (39%), Positives = 114/198 (57%), Gaps = 4/198 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREEL 71
           LE+ +    + PVAG+DEVGRGA AGP+VVAA +L P  I     ++DSKK+S + RE+L
Sbjct: 23  LESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDDSKKLSEQAREKL 82

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+   +       +D+H +H A ++ +  AV  L V P   L DG  +P  LP
Sbjct: 83  FPLICRYAVAYHVVFIPSAEVDRHGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVP-GLP 141

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD+ +  IAAAS++AKV+RDR+M      +P YGF  H GY T  H + +  
Sbjct: 142 MPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAHSRALAR 201

Query: 191 KGPSCIHRLTFRPLRNLS 208
            GP   HR +F  +R ++
Sbjct: 202 LGPCPQHRYSFINVRRVA 219


>gi|294340693|emb|CAZ89085.1| Ribonuclease HII (RNase HII) [Thiomonas sp. 3As]
          Length = 214

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 82/184 (44%), Positives = 116/184 (63%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG DEVGRG  AGPVV AA++LDP +   G+ DSK +S ++REEL   I + ++  SI
Sbjct: 17  LIAGCDEVGRGPWAGPVVAAAVVLDPAHPIAGLADSKLLSARRREELDAHIRAYSLAWSI 76

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           + +S + ID+ NI +ATL A+  AV  L       L+DG   P+ +     A++ GD++ 
Sbjct: 77  AESSVEEIDQRNILQATLLAMQRAVAALPCKIDLLLVDGNQTPQ-VAMPCRAIVGGDAVQ 135

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASIIAKV RDRLM    ++YP YGF+ H GY TA H+  +   GP  +HR +F P
Sbjct: 136 PAISAASIIAKVYRDRLMTELAQRYPGYGFERHSGYGTAAHRAALLTLGPCAVHRRSFAP 195

Query: 204 LRNL 207
           +R L
Sbjct: 196 IRRL 199


>gi|94267010|ref|ZP_01290655.1| Ribonuclease H [delta proteobacterium MLMS-1]
 gi|93452284|gb|EAT02925.1| Ribonuclease H [delta proteobacterium MLMS-1]
          Length = 236

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 85/200 (42%), Positives = 118/200 (59%), Gaps = 6/200 (3%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
               E  +  +    VAG DE GRG LAGPVV A ++L  +       DSK++S  +R E
Sbjct: 18  TLAFERSLWAQGYRLVAGTDEAGRGPLAGPVVAACVVLPVDCRSP-FQDSKQLSASRRRE 76

Query: 71  LYEKITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPE 127
           L  ++ +   A + +  AS   ID  NI +A+L A+  AV  LQ  P   L+DG+ +IP 
Sbjct: 77  LEAELNALPGAAVGVGIASVAEIDGLNILQASLLAMRKAVTALQPAPDFLLVDGKFTIPL 136

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           +LP    A+IKGDS S SIAAASI+AK  RD+LM   H++YP Y F  H GY TA+H+++
Sbjct: 137 ELP--QQALIKGDSRSASIAAASIVAKERRDQLMADLHRQYPQYNFIQHKGYATAEHRRL 194

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           +   GP   HR +F+P+R L
Sbjct: 195 LHRFGPCPEHRRSFKPVREL 214


>gi|227488611|ref|ZP_03918927.1| ribonuclease HII [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227543214|ref|ZP_03973263.1| ribonuclease HII [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227091505|gb|EEI26817.1| ribonuclease HII [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181023|gb|EEI61995.1| ribonuclease HII [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 208

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 76/195 (38%), Positives = 106/195 (54%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREELY 72
           E  + +  + PVAG+DE GRGA AGP+ +AA IL    IP    ++DSKK++  +R  L+
Sbjct: 5   EVALAKAGLGPVAGVDEAGRGACAGPITIAACILPDQFIPELELLDDSKKLTPARRAHLF 64

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   AI   I   S   ID+  I  A +  +  AV  L V P   L D   +P     
Sbjct: 65  PLIKRHAIAWHIVHISAHDIDERGITDANISGMRRAVGGLAVRPGYVLTDAWWVP-GFAQ 123

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
            +  VI GD+ +  IAAAS++AK +RD++M     +YP YGF  H GY TAKH   ++  
Sbjct: 124 PSLPVIGGDATARCIAAASVLAKYSRDQIMIDYDAQYPGYGFAGHKGYGTAKHMDAVRHH 183

Query: 192 GPSCIHRLTFRPLRN 206
           G S IHR ++  +RN
Sbjct: 184 GASPIHRYSYSNVRN 198


>gi|313754412|pdb|3O3G|A Chain A, T. Maritima Rnase H2 In Complex With Nucleic Acid
           Substrate And Calcium Ions
          Length = 222

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 82/198 (41%), Positives = 108/198 (54%), Gaps = 18/198 (9%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGP-------VVVAAIILDPNNIPFGINDSKKISHKKRE 69
            + +K    VAG+DE GRG LAGP       +              GINDSK++S  KRE
Sbjct: 4   ELYKKEFGIVAGVDEAGRGCLAGPVVAAAVVL---------EKEIEGINDSKQLSPAKRE 54

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L ++I   A + I  AS + ID +NI  AT  A+  A+ENL V P   L+DG+ I  +L
Sbjct: 55  RLLDEIMEKAAVGIGIASPEEIDLYNIFNATKLAMNRALENLSVKPSFVLVDGKGI--EL 112

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                 ++KGD  S  I AASI+AKV RDRLM   H+ YP + F  H GY T +H   I+
Sbjct: 113 SVPGTCLVKGDQKSKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKHKGYATKEHLNEIR 172

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + G   IHRL+F P+  L
Sbjct: 173 KNGVLPIHRLSFEPVLEL 190


>gi|115526417|ref|YP_783328.1| ribonuclease HII [Rhodopseudomonas palustris BisA53]
 gi|122294758|sp|Q07I86|RNH2_RHOP5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|115520364|gb|ABJ08348.1| RNase HII [Rhodopseudomonas palustris BisA53]
          Length = 278

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 1/195 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E  + ++ +WPVAG DE GRG LAGPVV AA++LDP  IP G++DSKK++ +KRE
Sbjct: 57  PSFRRERALLKRGIWPVAGCDEAGRGPLAGPVVAAAVVLDPKRIPKGLDDSKKLTAEKRE 116

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L+E+I ++A  +++ AS   I++ NI +A+L A+  AV+ L   P+   +DGR      
Sbjct: 117 ALFEEICATASFAVAYASPARIERDNILRASLWALARAVQALPEPPKHVFVDGRD-KIIT 175

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           PC   AVI GD++ LSIAAASIIAKV RDRLM    +  P YGFD H GY   +H   + 
Sbjct: 176 PCDCDAVIGGDALVLSIAAASIIAKVARDRLMCRLAEDCPGYGFDHHKGYGVPEHLAALD 235

Query: 190 EKGPSCIHRLTFRPL 204
             GP+  HR  F P+
Sbjct: 236 RLGPTKHHRKLFAPV 250


>gi|325971128|ref|YP_004247319.1| ribonuclease H [Spirochaeta sp. Buddy]
 gi|324026366|gb|ADY13125.1| Ribonuclease H [Spirochaeta sp. Buddy]
          Length = 209

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 83/199 (41%), Positives = 112/199 (56%), Gaps = 9/199 (4%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           + E   F  EA         + G+DE GRG LAGPVV AA+IL P+     +NDSKK+S 
Sbjct: 1   MEESLLFSFEAE-----NQVLCGLDEAGRGPLAGPVVAAAVILGPDFPTEILNDSKKLSE 55

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDG 122
           K+R E    I   A+  ++  A+ Q ID+ NI +A+L A+  A E +  Q+    AL+DG
Sbjct: 56  KQRLEAEIVIKQKALYWAVGLATAQEIDRINILQASLLAMKRAYEKISSQIHVDVALVDG 115

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
              P +L C   A++ GD++   I AASI+AK  RDR M + H K+P Y F  H GYPT 
Sbjct: 116 NQRP-NLDCITQAIVGGDALIPQIMAASILAKNQRDRYMVLCHTKWPFYNFAKHKGYPTE 174

Query: 183 KHQQVIKEKGPSCIHRLTF 201
           +H+      G S IHR TF
Sbjct: 175 EHRSACLLYGLSPIHRRTF 193


>gi|326803548|ref|YP_004321366.1| ribonuclease HII [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651055|gb|AEA01238.1| ribonuclease HII [Aerococcus urinae ACS-120-V-Col10a]
          Length = 258

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 81/195 (41%), Positives = 120/195 (61%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           ++EA +  K    +AG+DEVGRG LAGPVV AA+IL P    F + DSK++S  +R+ L 
Sbjct: 64  QIEADLHAKGFQYIAGVDEVGRGPLAGPVVTAAVILKPKRPLFDLRDSKQLSQVQRQNLI 123

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I  +++ I+I    ++ ID++NI  AT  ++ ++++ L       LID   +   L  
Sbjct: 124 PLIKENSVAIAIDVQDNEAIDRYNILNATKRSMMNSIKKLSPQAEYVLIDAVDL--SLNI 181

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD    +IAAASIIAK  RD++MR   K+YP YGFD +VGY T +H + I+  
Sbjct: 182 PHSSLIKGDDRVSAIAAASIIAKEYRDQIMRDYAKRYPAYGFDRNVGYGTKEHLKAIETY 241

Query: 192 GPSCIHRLTFRPLRN 206
           GP  IHR +F P++N
Sbjct: 242 GPCPIHRKSFAPIKN 256


>gi|262276832|ref|ZP_06054625.1| ribonuclease HII [alpha proteobacterium HIMB114]
 gi|262223935|gb|EEY74394.1| ribonuclease HII [alpha proteobacterium HIMB114]
          Length = 199

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 74/184 (40%), Positives = 105/184 (57%), Gaps = 1/184 (0%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
            V G+DEVGRG LAGPVV AA+IL  +     ++DSKK+S  KRE+ +E +   +   + 
Sbjct: 13  FVVGVDEVGRGPLAGPVVSAAVILPLDFDYKCLDDSKKLSKVKREKAFEILKKKSKFKLG 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-ALIDGRSIPEDLPCQAFAVIKGDSIS 143
            A    IDK NI +A+L ++  AV+   +      L+DG    +         IKGD+  
Sbjct: 73  IAEVDEIDKINILQASLISMKRAVDQFDLPKDHKILVDGPWSFDKTNQNIITKIKGDAKY 132

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SIAAASIIAKV RD++M    K +  Y +D++ GY T KH + IKE G +  HR +F P
Sbjct: 133 PSIAAASIIAKVYRDQIMSKLSKNFVQYSWDTNSGYGTQKHLKAIKEHGITVHHRKSFAP 192

Query: 204 LRNL 207
           +  +
Sbjct: 193 IHKI 196


>gi|237740891|ref|ZP_04571372.1| ribonuclease HII [Fusobacterium sp. 4_1_13]
 gi|256846832|ref|ZP_05552287.1| ribonuclease HII [Fusobacterium sp. 3_1_36A2]
 gi|229431188|gb|EEO41400.1| ribonuclease HII [Fusobacterium sp. 4_1_13]
 gi|256717798|gb|EEU31356.1| ribonuclease HII [Fusobacterium sp. 3_1_36A2]
          Length = 214

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 82/191 (42%), Positives = 116/191 (60%), Gaps = 7/191 (3%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKIT 76
           + +     V G+DE GRG LAGPVV AA+IL   +     INDSKK++ K RE+LY+ I 
Sbjct: 11  LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSKKLTEKTREKLYDIIM 70

Query: 77  SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPC 131
            +  +++  ++ + IDK NI  A   A+  A+++L+ I +       L+DG    ++   
Sbjct: 71  KNFYVAVGVSTVEEIDKLNILNADFLAMRRALKDLENIKKDKKEYTVLVDGNLKIKEYTG 130

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   ++KGD+ SLSIAAASIIAKVTRDRLM+     YPDY F+ H GY T  H +VIK+K
Sbjct: 131 KQLPIVKGDAKSLSIAAASIIAKVTRDRLMKDLASVYPDYHFEKHKGYGTKVHIEVIKDK 190

Query: 192 GPSC-IHRLTF 201
           G    +HR  F
Sbjct: 191 GAIEGVHRKVF 201


>gi|118617628|ref|YP_905960.1| ribonuclease HII [Mycobacterium ulcerans Agy99]
 gi|166226630|sp|A0PQ70|RNH2_MYCUA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|118569738|gb|ABL04489.1| ribonuclease HII protein RnhB [Mycobacterium ulcerans Agy99]
          Length = 239

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 79/198 (39%), Positives = 113/198 (57%), Gaps = 4/198 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE+ ++   + PVAG+DEVGRGA AGP+VVAA  L PN       ++DSKK++ K RE+L
Sbjct: 20  LESALQRSGLGPVAGVDEVGRGACAGPLVVAACALGPNRYESLAALDDSKKLTEKTREKL 79

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+   +       +D+  +H A ++ +  AV  L V P   L DG  +P  L 
Sbjct: 80  FPLICRYALAYHVVFIPSVEVDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP-GLS 138

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD+ +  IAAAS++AKV+RDRLM     +YP YGF  H GY T  H   + +
Sbjct: 139 VPSLPVIGGDAAAACIAAASVLAKVSRDRLMVAMDTQYPGYGFAEHKGYSTRAHTLALTQ 198

Query: 191 KGPSCIHRLTFRPLRNLS 208
            GP   HR +F  +R ++
Sbjct: 199 LGPCPEHRRSFINVRRVA 216


>gi|169830848|ref|YP_001716830.1| ribonuclease HII [Candidatus Desulforudis audaxviator MP104C]
 gi|169637692|gb|ACA59198.1| Ribonuclease H [Candidatus Desulforudis audaxviator MP104C]
          Length = 267

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 78/191 (40%), Positives = 109/191 (57%), Gaps = 1/191 (0%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +  E  +      PVAG DE GRG LAGPVV AA++L        + DSK+++   R  L
Sbjct: 65  YGYERALEAAGCGPVAGTDEAGRGPLAGPVVAAAVVLSRGAAIPELKDSKQLTGPARSRL 124

Query: 72  YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            ++I +      I  A    I + NI +A+L A+  A++ L  IP   L+DG       P
Sbjct: 125 ADEIRARCHAWGIGVADVGEIARLNILRASLLAMRRALDGLGFIPGWVLVDGSFTVPLFP 184

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               A++KGD +S S+AAASI+AKV RD LM   H+ YP+YGFD H GYPT +H Q ++ 
Sbjct: 185 GPQTALVKGDRVSASVAAASILAKVYRDELMERLHRLYPEYGFDRHKGYPTPEHYQALER 244

Query: 191 KGPSCIHRLTF 201
            GP  +HR++F
Sbjct: 245 YGPCPLHRVSF 255


>gi|296117635|ref|ZP_06836219.1| ribonuclease HII [Corynebacterium ammoniagenes DSM 20306]
 gi|295969366|gb|EFG82607.1| ribonuclease HII [Corynebacterium ammoniagenes DSM 20306]
          Length = 223

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 79/194 (40%), Positives = 107/194 (55%), Gaps = 4/194 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
            E  + +  + PVAG+DE GRGA AGP+ +AA IL    IP    + DSKK+S K+REEL
Sbjct: 10  YEVALSKAGLGPVAGVDEAGRGACAGPITIAACILPEKIIPSLATLTDSKKLSAKQREEL 69

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I  +A+  SI       IDKH I  A +  +  AV  L+V PR  L D   +     
Sbjct: 70  FPAIQRNALAYSIVHIDPGDIDKHGIQHANVSGMRRAVARLEVRPRYILTDALKV-SGFT 128

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                V+ GD     IAAAS++AKV+RD +M    +KYP YG   H GY TA H + IK 
Sbjct: 129 APYLPVVGGDFAIRCIAAASVLAKVSRDHIMEELEEKYPGYGLGKHKGYGTAVHTEAIKT 188

Query: 191 KGPSCIHRLTFRPL 204
            G + IHR+++  +
Sbjct: 189 LGATAIHRMSYSNV 202


>gi|256028260|ref|ZP_05442094.1| ribonuclease HII [Fusobacterium sp. D11]
          Length = 234

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 80/194 (41%), Positives = 115/194 (59%), Gaps = 10/194 (5%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKIT 76
           + +     V G+DE GRG LAGPVV AA+IL   +     INDSKK++ KKRE+LY+ I 
Sbjct: 28  LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSKKLTEKKREKLYDIIM 87

Query: 77  SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS--------ALIDGRSIPED 128
            +  +++  ++ + IDK NI  A   A+  A+++L+ I +          L+DG    ++
Sbjct: 88  KNFYVAVGISTVEEIDKMNILNADFLAMRRALKDLENIKKDKKDKKEYIVLVDGNLKIKE 147

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
              +   ++KGD+ SLS+AAASIIAKVTRDR M+     YPDY F+ H GY T  H + I
Sbjct: 148 YSGKQLPIVKGDAKSLSVAAASIIAKVTRDRFMKDLANIYPDYSFEKHKGYGTKAHIEAI 207

Query: 189 KEKGPSC-IHRLTF 201
           K+KG    +HR  F
Sbjct: 208 KDKGAIEGVHRKVF 221


>gi|237745358|ref|ZP_04575839.1| ribonuclease HII [Fusobacterium sp. 7_1]
 gi|229432587|gb|EEO42799.1| ribonuclease HII [Fusobacterium sp. 7_1]
          Length = 214

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 80/191 (41%), Positives = 115/191 (60%), Gaps = 7/191 (3%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKIT 76
           + +     V G+DE GRG LAGPVV AA+IL   +     INDSKK++ KKRE+LY+ I 
Sbjct: 11  LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSKKLTEKKREKLYDIIM 70

Query: 77  SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPC 131
            +  +++  ++ + IDK NI  A   A+  A+++L+ I +       L+DG    ++   
Sbjct: 71  KNFYVAVGISTVEEIDKMNILNADFLAMRRALKDLENIKKDKKEYIVLVDGNLKIKEYSG 130

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   ++KGD+ SLS+AAASIIAKVTRDR M+     YPDY F+ H GY T  H + IK+K
Sbjct: 131 KQLPIVKGDAKSLSVAAASIIAKVTRDRFMKDLANIYPDYSFEKHKGYGTKAHIEAIKDK 190

Query: 192 GPSC-IHRLTF 201
           G    +HR  F
Sbjct: 191 GAIEGVHRKVF 201


>gi|163814002|ref|ZP_02205395.1| hypothetical protein COPEUT_00154 [Coprococcus eutactus ATCC 27759]
 gi|158450696|gb|EDP27691.1| hypothetical protein COPEUT_00154 [Coprococcus eutactus ATCC 27759]
          Length = 255

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 87/191 (45%), Positives = 115/191 (60%), Gaps = 4/191 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           FE E    +     + GIDEVGRG LAGPVV AA+IL        +NDSK+IS +KRE L
Sbjct: 63  FEYERKYSDNEF--ICGIDEVGRGPLAGPVVAAAVILPKECDILYLNDSKQISAQKRELL 120

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y++I   A+ + +  A+   ID  NI  A  +A+  A+  L V P+  L D  +IP  + 
Sbjct: 121 YDEIMEKAVAVGVGMANQDVIDDINILNADYEAMKQAISKLSVRPQLLLNDAVNIP-GVD 179

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +IKGD++S SIAAASIIAKVTRDRLM      YP YGF  ++GY TA+H + ++ 
Sbjct: 180 IPQVGIIKGDTLSASIAAASIIAKVTRDRLMVEYDSIYPGYGFARNMGYGTAEHIKALET 239

Query: 191 KGPSCIHRLTF 201
            GP  IHR +F
Sbjct: 240 IGPCAIHRRSF 250


>gi|15618043|ref|NP_224327.1| ribonuclease HII [Chlamydophila pneumoniae CWL029]
 gi|15835655|ref|NP_300179.1| ribonuclease HII [Chlamydophila pneumoniae J138]
 gi|16752925|ref|NP_445196.1| ribonuclease HII [Chlamydophila pneumoniae AR39]
 gi|33241455|ref|NP_876396.1| ribonuclease HII [Chlamydophila pneumoniae TW-183]
 gi|7227930|sp|Q9Z962|RNH2_CHLPN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|4376382|gb|AAD18272.1| Ribonuclease HII [Chlamydophila pneumoniae CWL029]
 gi|8163472|gb|AAF73691.1| ribonuclease HII [Chlamydophila pneumoniae AR39]
 gi|8978493|dbj|BAA98330.1| ribonuclease HII [Chlamydophila pneumoniae J138]
 gi|33235963|gb|AAP98053.1| ribonuclease H II [Chlamydophila pneumoniae TW-183]
          Length = 214

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 84/197 (42%), Positives = 121/197 (61%), Gaps = 4/197 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  +  ++   VAGIDE GRG LAGPVV +A IL    +  G+NDSKK+S K+R ++ 
Sbjct: 16  AFEKELVSEDFSVVAGIDEAGRGPLAGPVVASACILPKGKVFPGVNDSKKLSPKQRAQVR 75

Query: 73  EKITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           + +         I   S + ID+ NI +AT +A+  A+ +L + P   L+DG  +P D+P
Sbjct: 76  DALMQDPEVCFGIGVISVERIDQVNILEATKEAMLQAISSLPISPDILLVDGLYLPHDIP 135

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
           C+   +I+GD+ S SIAAASI+AK  RD LM   H+ YP+YGFD H GY T+ H + I+ 
Sbjct: 136 CK--KIIQGDAKSASIAAASILAKEHRDDLMLQLHRLYPEYGFDRHKGYGTSLHVEAIRR 193

Query: 191 KGPSCIHRLTFRPLRNL 207
            GPS  HR +F P++ +
Sbjct: 194 YGPSPCHRKSFSPIKQM 210


>gi|303246153|ref|ZP_07332434.1| Ribonuclease H [Desulfovibrio fructosovorans JJ]
 gi|302492549|gb|EFL52420.1| Ribonuclease H [Desulfovibrio fructosovorans JJ]
          Length = 206

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 80/188 (42%), Positives = 107/188 (56%), Gaps = 8/188 (4%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            +AG+DE GRG LAGPVV  A+IL        + DSKK+S  +RE L   I + AI  ++
Sbjct: 6   LIAGVDEAGRGCLAGPVVAGAVILPEAYDLPFLTDSKKLSAARREGLAPAIKAQAIAWAV 65

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPED------LPCQAFAV 136
             A    ID+ NI +AT  A+  AV  L+V P +  IDG   IP         P    A+
Sbjct: 66  GMAWPVEIDRINILQATFAAMSRAVRALRVRPEALKIDGNKRIPAAHLANIAAPPPQEAI 125

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           I GD    +I+AASI+AK +RD+LM I  +++P YGF SH GY    H   ++E GP  +
Sbjct: 126 IGGDLSVPAISAASILAKTSRDKLMTIFDRQFPGYGFASHKGYGAKAHLAALRELGPCRL 185

Query: 197 HRLTFRPL 204
           HRLTFR +
Sbjct: 186 HRLTFRGV 193


>gi|15610039|ref|NP_217418.1| ribonuclease HII [Mycobacterium tuberculosis H37Rv]
 gi|15842445|ref|NP_337482.1| ribonuclease HII [Mycobacterium tuberculosis CDC1551]
 gi|121638783|ref|YP_979007.1| ribonuclease HII [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148662746|ref|YP_001284269.1| ribonuclease HII [Mycobacterium tuberculosis H37Ra]
 gi|148824091|ref|YP_001288845.1| ribonuclease HII [Mycobacterium tuberculosis F11]
 gi|167969531|ref|ZP_02551808.1| ribonuclease HII [Mycobacterium tuberculosis H37Ra]
 gi|215404876|ref|ZP_03417057.1| ribonuclease HII [Mycobacterium tuberculosis 02_1987]
 gi|215412745|ref|ZP_03421457.1| ribonuclease HII [Mycobacterium tuberculosis 94_M4241A]
 gi|215428343|ref|ZP_03426262.1| ribonuclease HII [Mycobacterium tuberculosis T92]
 gi|215431850|ref|ZP_03429769.1| ribonuclease HII [Mycobacterium tuberculosis EAS054]
 gi|215447164|ref|ZP_03433916.1| ribonuclease HII [Mycobacterium tuberculosis T85]
 gi|218754655|ref|ZP_03533451.1| ribonuclease HII [Mycobacterium tuberculosis GM 1503]
 gi|219558926|ref|ZP_03538002.1| ribonuclease HII [Mycobacterium tuberculosis T17]
 gi|224991275|ref|YP_002645964.1| ribonuclease HII [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798010|ref|YP_003031011.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis KZN 1435]
 gi|254365542|ref|ZP_04981587.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254551974|ref|ZP_05142421.1| ribonuclease HII [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260187921|ref|ZP_05765395.1| ribonuclease HII [Mycobacterium tuberculosis CPHL_A]
 gi|260202037|ref|ZP_05769528.1| ribonuclease HII [Mycobacterium tuberculosis T46]
 gi|260206220|ref|ZP_05773711.1| ribonuclease HII [Mycobacterium tuberculosis K85]
 gi|289444457|ref|ZP_06434201.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T46]
 gi|289448567|ref|ZP_06438311.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis CPHL_A]
 gi|289553309|ref|ZP_06442519.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis KZN 605]
 gi|289571090|ref|ZP_06451317.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T17]
 gi|289575607|ref|ZP_06455834.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis K85]
 gi|289746701|ref|ZP_06506079.1| ribonuclease HII [Mycobacterium tuberculosis 02_1987]
 gi|289751567|ref|ZP_06510945.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T92]
 gi|289755014|ref|ZP_06514392.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis EAS054]
 gi|289759022|ref|ZP_06518400.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T85]
 gi|289763078|ref|ZP_06522456.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium
           tuberculosis GM 1503]
 gi|294994002|ref|ZP_06799693.1| ribonuclease HII [Mycobacterium tuberculosis 210]
 gi|297635520|ref|ZP_06953300.1| ribonuclease HII [Mycobacterium tuberculosis KZN 4207]
 gi|297732519|ref|ZP_06961637.1| ribonuclease HII [Mycobacterium tuberculosis KZN R506]
 gi|298526371|ref|ZP_07013780.1| ribonuclease HII [Mycobacterium tuberculosis 94_M4241A]
 gi|306777190|ref|ZP_07415527.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu001]
 gi|306781097|ref|ZP_07419434.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu002]
 gi|306785737|ref|ZP_07424059.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu003]
 gi|306789776|ref|ZP_07428098.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu004]
 gi|306794590|ref|ZP_07432892.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu005]
 gi|306798833|ref|ZP_07437135.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu006]
 gi|306804679|ref|ZP_07441347.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu008]
 gi|306808871|ref|ZP_07445539.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu007]
 gi|306968970|ref|ZP_07481631.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu009]
 gi|306973307|ref|ZP_07485968.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu010]
 gi|307081015|ref|ZP_07490185.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu011]
 gi|307085614|ref|ZP_07494727.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu012]
 gi|313659851|ref|ZP_07816731.1| ribonuclease HII [Mycobacterium tuberculosis KZN V2475]
 gi|1710612|sp|Q10793|RNH2_MYCTU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166226625|sp|A1KMP6|RNH2_MYCBP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166226629|sp|A5U6Q7|RNH2_MYCTA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807981|sp|C1AG17|RNH2_MYCBT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|1403423|emb|CAA98340.1| PROBABLE RIBONUCLEASE HII PROTEIN RNHB (RNASE HII) [Mycobacterium
           tuberculosis H37Rv]
 gi|13882748|gb|AAK47296.1| ribonuclease HII [Mycobacterium tuberculosis CDC1551]
 gi|121494431|emb|CAL72912.1| Probable ribonuclease HII protein rnhB [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|134151055|gb|EBA43100.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148506898|gb|ABQ74707.1| ribonuclease HII [Mycobacterium tuberculosis H37Ra]
 gi|148722618|gb|ABR07243.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium
           tuberculosis F11]
 gi|224774390|dbj|BAH27196.1| ribonuclease HII [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319513|gb|ACT24116.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis KZN 1435]
 gi|289417376|gb|EFD14616.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T46]
 gi|289421525|gb|EFD18726.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis CPHL_A]
 gi|289437941|gb|EFD20434.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis KZN 605]
 gi|289540038|gb|EFD44616.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis K85]
 gi|289544844|gb|EFD48492.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T17]
 gi|289687229|gb|EFD54717.1| ribonuclease HII [Mycobacterium tuberculosis 02_1987]
 gi|289692154|gb|EFD59583.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T92]
 gi|289695601|gb|EFD63030.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis EAS054]
 gi|289710584|gb|EFD74600.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium
           tuberculosis GM 1503]
 gi|289714586|gb|EFD78598.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T85]
 gi|298496165|gb|EFI31459.1| ribonuclease HII [Mycobacterium tuberculosis 94_M4241A]
 gi|308214472|gb|EFO73871.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu001]
 gi|308326083|gb|EFP14934.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu002]
 gi|308329647|gb|EFP18498.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu003]
 gi|308333786|gb|EFP22637.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu004]
 gi|308337180|gb|EFP26031.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu005]
 gi|308340911|gb|EFP29762.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu006]
 gi|308344823|gb|EFP33674.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu007]
 gi|308348771|gb|EFP37622.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu008]
 gi|308353472|gb|EFP42323.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu009]
 gi|308357337|gb|EFP46188.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu010]
 gi|308361221|gb|EFP50072.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu011]
 gi|308364841|gb|EFP53692.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu012]
 gi|323718512|gb|EGB27683.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis CDC1551A]
 gi|326904516|gb|EGE51449.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis W-148]
 gi|328457784|gb|AEB03207.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis KZN 4207]
          Length = 264

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 78/198 (39%), Positives = 113/198 (57%), Gaps = 4/198 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREEL 71
           LE+ +    + PVAG+DEVGRGA AGP+VVAA +L P  I     ++DSKK+S + RE+L
Sbjct: 23  LESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDDSKKLSEQAREKL 82

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+   +       +D+  +H A ++ +  AV  L V P   L DG  +P  LP
Sbjct: 83  FPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVP-GLP 141

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD+ +  IAAAS++AKV+RDR+M      +P YGF  H GY T  H + +  
Sbjct: 142 MPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAHSRALAR 201

Query: 191 KGPSCIHRLTFRPLRNLS 208
            GP   HR +F  +R ++
Sbjct: 202 LGPCPQHRYSFINVRRVA 219


>gi|260495645|ref|ZP_05815769.1| ribonuclease HII [Fusobacterium sp. 3_1_33]
 gi|260196828|gb|EEW94351.1| ribonuclease HII [Fusobacterium sp. 3_1_33]
          Length = 214

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 82/191 (42%), Positives = 116/191 (60%), Gaps = 7/191 (3%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKIT 76
           + +     V G+DE GRG LAGPVV AA+IL   +     INDSKK++ KKRE+LY+ I 
Sbjct: 11  LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSKKLTEKKREKLYDIIM 70

Query: 77  SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPC 131
            +  +++  ++ + IDK NI  A   A+  A+++L+ I +       L+DG    ++   
Sbjct: 71  KNFYVAVGISTVEEIDKMNILNADFLAMRRALKDLENIKKDKKEYIVLVDGNLKIKEYSG 130

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   ++KGD+ SLS+AAASIIAKVTRDRLM+     YPDY F+ H GY T  H +VIK K
Sbjct: 131 KQLPIVKGDAKSLSVAAASIIAKVTRDRLMKDLANTYPDYSFEKHKGYGTKAHIEVIKNK 190

Query: 192 GPSC-IHRLTF 201
           G    +HR  F
Sbjct: 191 GAIEGVHRKVF 201


>gi|188992332|ref|YP_001904342.1| ribonuclease HII [Xanthomonas campestris pv. campestris str. B100]
 gi|189043675|sp|B0RW80|RNH2_XANCB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|167734092|emb|CAP52298.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 240

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 82/185 (44%), Positives = 118/185 (63%), Gaps = 2/185 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-I 81
             +AG+DE GRG LAGPV VAA++ DP      G++DSK++S ++RE+LY +I   A+  
Sbjct: 31  RLIAGVDEAGRGPLAGPVAVAAVVFDPAKPRINGLDDSKQLSAERREQLYARIVDRALAW 90

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           S+     + ID+ NI++AT+  +  AVE +  +   A IDG  +P+ LP  A A+I GD+
Sbjct: 91  SVVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPFPAEALIGGDA 150

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +  +I AASI+AKVTRDRLMR  H ++P+Y FD H GY T  H   ++  GP   HR +F
Sbjct: 151 LDRAIMAASIVAKVTRDRLMRELHAQHPEYRFDLHKGYSTPAHLAALQTHGPCPQHRRSF 210

Query: 202 RPLRN 206
            P+R 
Sbjct: 211 APVRR 215


>gi|225848014|ref|YP_002728177.1| ribonuclease HII [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644327|gb|ACN99377.1| ribonuclease HII [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 193

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 3/191 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
            LE  + +     + GIDE GRG +AGP+V++A+I   N  PF   DSKK+S K+R+ LY
Sbjct: 3   SLEKKIYKNGYKYIVGIDEAGRGPIAGPLVISAVIFKYNQKPFVYADSKKLSPKERDSLY 62

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I  +A+  SI    ++ ID   I  A  + IY A+E L + P  A++D  +I  DL  
Sbjct: 63  NEILENALDYSIVVVDNEKIDSLGISSALKEGIYKAIEKLYIKPDYAILDFINI--DLDF 120

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
            + ++ K D +S ++AAASI++K+TRDR+M    K YP++ FD H GYPT +H Q IK  
Sbjct: 121 DSISIPKADEVSHTVAAASILSKITRDRIMEDYSKIYPNFSFDKHKGYPTKQHYQEIKMY 180

Query: 192 GPSCIHRLTFR 202
           G + IHR ++R
Sbjct: 181 GITPIHRKSYR 191


>gi|307152014|ref|YP_003887398.1| Ribonuclease H [Cyanothece sp. PCC 7822]
 gi|306982242|gb|ADN14123.1| Ribonuclease H [Cyanothece sp. PCC 7822]
          Length = 215

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 83/212 (39%), Positives = 129/212 (60%), Gaps = 7/212 (3%)

Query: 5   SIPERPHFELEAMVR-EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGIND 59
           + P  P F++  +   +     +AG+DEVGRGAL GPV   A+I+  + +P     G+ D
Sbjct: 2   TKPILPTFDISLLPEVKSQETLIAGVDEVGRGALFGPVAAGAVIIPVSALPQLTALGVKD 61

Query: 60  SKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118
           SK++S KKR EL  +I + A+   +S A+   ID+ NI +A+L A+Y AV  L+V     
Sbjct: 62  SKQLSPKKRSELAAQIKAMALDFHVSFATVMDIDRINILQASLLAMYRAVAKLKVEAAVC 121

Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
           L+DG+    +L  +   +++GD  S  IAAASI+AKV RD+L+    +KYP Y   ++ G
Sbjct: 122 LVDGKQPIPNLAIRQENIVRGDERSPVIAAASILAKVWRDQLIVRLARKYPHYDLIANKG 181

Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPL-RNLSV 209
           Y T +H++ + + GPS  HRL+FRP  ++LS+
Sbjct: 182 YGTIRHREALLKYGPSPQHRLSFRPCQKSLSI 213


>gi|332799159|ref|YP_004460658.1| Ribonuclease H [Tepidanaerobacter sp. Re1]
 gi|332696894|gb|AEE91351.1| Ribonuclease H [Tepidanaerobacter sp. Re1]
          Length = 210

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 89/199 (44%), Positives = 119/199 (59%), Gaps = 3/199 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           ++ E  ++++    VAG+DE GRG LAGPVV AA+IL  +     + DSKKIS KKRE++
Sbjct: 14  YDRERKLKQEGFTLVAGVDEAGRGPLAGPVVAAAVILVLDTEILNLKDSKKISEKKREKV 73

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           YE I   A+  +       YID HNI  +TL A+ +AVE L V P   L+D   IP D+ 
Sbjct: 74  YEDIKGKAVAYAYDVIDADYIDNHNILNSTLMAMKNAVEKLPVKPEYILVDALKIP-DIT 132

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                VI GD+I   IAAASIIAKV RDR+MR     YP+YGF  + GY T +H   I++
Sbjct: 133 IPQEFVIHGDNICACIAAASIIAKVERDRIMRKYDLVYPEYGFIKNKGYGTKEHIDSIRK 192

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            G   IHR +F  ++ L +
Sbjct: 193 HGICPIHRRSFS-VKGLEI 210


>gi|153007852|ref|YP_001369067.1| ribonuclease HII [Ochrobactrum anthropi ATCC 49188]
 gi|166226633|sp|A6WW84|RNH2_OCHA4 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|151559740|gb|ABS13238.1| Ribonuclease H [Ochrobactrum anthropi ATCC 49188]
          Length = 220

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 99/203 (48%), Positives = 132/203 (65%), Gaps = 2/203 (0%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
            IP  P F  E  +  + +  + GIDE GRG LAGPVV AA++LD +N+P G++DSK+++
Sbjct: 13  DIPLAPDFSEEKRLLARGLKHIVGIDEAGRGPLAGPVVAAAVVLDIDNLPNGLDDSKRLT 72

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
             KRE LYE I   AI +S++S S + ID  +I KA L+A+  A   L + P  ALIDGR
Sbjct: 73  AVKREALYETILEKAITVSVASLSARSIDASDIRKAALEAMRRASVGLTLQPCHALIDGR 132

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +P  LPC   A++KGD  S+SIAAASI+AKVTRDR+M  A   +P YG + H GY T K
Sbjct: 133 DVPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATVK 192

Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205
           H+  I+  GP   IHR TF P++
Sbjct: 193 HRAAIETTGPVPGIHRYTFAPIK 215


>gi|157825403|ref|YP_001493123.1| ribonuclease HII [Rickettsia akari str. Hartford]
 gi|166226646|sp|A8GMJ0|RNH2_RICAH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157799361|gb|ABV74615.1| ribonuclease HII [Rickettsia akari str. Hartford]
          Length = 193

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 89/191 (46%), Positives = 117/191 (61%), Gaps = 5/191 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E        + VAGIDE GRG LAGPVV +A+I+D  NI  GI DSKK+S KKR  L
Sbjct: 6   LHFEKKYHN---YIVAGIDEAGRGPLAGPVVASAVIIDNANIIHGIKDSKKLSKKKRALL 62

Query: 72  YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           YE+ITS+ + +++  +H  IDK NI +AT  A   A  NL V P   L+DG     D   
Sbjct: 63  YEQITSNYVWAVAIITHTEIDKINILEATKKACSIAAANLNVKPEIVLVDGNMQFSD--E 120

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +  +++ GD++SLSIAAASIIAKVTRDRLM     K+P Y +  + GY T +H + I + 
Sbjct: 121 RFISIVNGDNLSLSIAAASIIAKVTRDRLMLELSAKFPQYLWHKNSGYGTKEHLEAINKY 180

Query: 192 GPSCIHRLTFR 202
           G S  HR +F+
Sbjct: 181 GLSPYHRKSFK 191


>gi|124267155|ref|YP_001021159.1| ribonuclease HII [Methylibium petroleiphilum PM1]
 gi|189043524|sp|A2SH85|RNH22_METPP RecName: Full=Ribonuclease HII 2; Short=RNase HII 2
 gi|124259930|gb|ABM94924.1| RNase HII [Methylibium petroleiphilum PM1]
          Length = 217

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 82/187 (43%), Positives = 115/187 (61%), Gaps = 2/187 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS- 82
             +AG+DE GRG LAGPVV AA+ILD      G+ DSK +S + RE L+++I + A+   
Sbjct: 28  GLLAGVDEAGRGPLAGPVVAAAVILDDVQPIRGLGDSKVLSERVRERLFDEIRAKALCCC 87

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+ AS + ID  NI +ATL A+  AV  L++ P   L+DG  +P  L   A A++KGD+ 
Sbjct: 88  IAEASVEEIDTLNILQATLLAMRRAVAGLRLRPNKVLVDGNRLPV-LQVPAEAIVKGDAK 146

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +I+AASI+AKV RDRL    H+ +P YGF  H GYPT  H   ++  G    HR +F 
Sbjct: 147 VAAISAASILAKVHRDRLCLALHEAHPQYGFAGHKGYPTPDHLAALRVHGACGAHRRSFA 206

Query: 203 PLRNLSV 209
           P+R + +
Sbjct: 207 PVREVLL 213


>gi|323143575|ref|ZP_08078252.1| ribonuclease HII [Succinatimonas hippei YIT 12066]
 gi|322416638|gb|EFY07295.1| ribonuclease HII [Succinatimonas hippei YIT 12066]
          Length = 213

 Score =  224 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 77/184 (41%), Positives = 107/184 (58%), Gaps = 1/184 (0%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            V G DE GRG L G VV A +ILDP+    G+ DSKK+S KKR+ L  +I  +A+   I
Sbjct: 19  LVCGADEAGRGPLVGNVVAACVILDPSRPISGLADSKKLSEKKRDALALQIKENALAYGI 78

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
              + + ID+ NI  A+L+A+  A  N+       LIDG  +  D P    AV+KGD+  
Sbjct: 79  GQCTPKEIDRMNILYASLEAMRRAYVNMHKTCELMLIDGNKLIPDFPLAMQAVVKGDARV 138

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AK  RD  +    K+YP+YGF  H GYPTA H +V+ +      +R+T+ P
Sbjct: 139 PEISAASILAKTERDAQLYALDKQYPEYGFARHKGYPTAAHFEVLHKLPLLSCYRMTYAP 198

Query: 204 LRNL 207
           +R L
Sbjct: 199 IRKL 202


>gi|256545488|ref|ZP_05472850.1| ribonuclease HII [Anaerococcus vaginalis ATCC 51170]
 gi|256398884|gb|EEU12499.1| ribonuclease HII [Anaerococcus vaginalis ATCC 51170]
          Length = 210

 Score =  224 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 83/200 (41%), Positives = 120/200 (60%), Gaps = 9/200 (4%)

Query: 8   ERPHFE-----LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62
           ++P +      ++  + EK    +AGIDEVGRG LAGPVV  A+I+  ++   G+ DSKK
Sbjct: 2   KKPRYSEFNDKIKNEIHEK-YELIAGIDEVGRGPLAGPVVACAVIMKKDSHIEGVTDSKK 60

Query: 63  ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           +S K+  ELY+KI   +I  S   A++  IDK NI +AT  A+  A+E L+  P+  LID
Sbjct: 61  LSKKRMNELYQKIIDDSISYSFGYANNILIDKINIKEATKLAMKDALEGLEKKPQIVLID 120

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
              I  D   +   ++KGD    +I+ ASI+AKV RD++M    K YP Y F+S+VGY T
Sbjct: 121 AERI--DTHIKQLNIVKGDLYEYAISCASILAKVRRDKIMENFSKIYPYYSFESNVGYGT 178

Query: 182 AKHQQVIKEKGPSCIHRLTF 201
            KH + +++ G   IHR TF
Sbjct: 179 KKHYEGLEKFGECPIHRKTF 198


>gi|114331990|ref|YP_748212.1| ribonuclease H [Nitrosomonas eutropha C91]
 gi|122313303|sp|Q0AEI5|RNH2_NITEC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|114309004|gb|ABI60247.1| RNase HII [Nitrosomonas eutropha C91]
          Length = 219

 Score =  224 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 79/180 (43%), Positives = 109/180 (60%), Gaps = 3/180 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84
           + G+DE GRG LAGPV  A ++LD   +  G+ DSK++S K+R  L E+I   A   +I+
Sbjct: 34  IYGVDEAGRGPLAGPVYAACVVLDSCYVINGLADSKQLSEKRRASLAEQIKQHARAWAIA 93

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENL-QVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           SAS + ID+ NI +A++ A+  AV  L  V     L+DG  +P+ L  +  AVI+GDS+ 
Sbjct: 94  SASVEEIDRLNILQASMLAMRRAVIELMPVSNALILVDGTHVPQ-LDYEVQAVIRGDSLV 152

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AK  RD  M   H+ YP YGFD H GYPT  H   I+  G +  HR +F P
Sbjct: 153 AEISAASILAKTARDAEMLRLHEIYPIYGFDRHKGYPTRVHLDAIRLHGITATHRKSFAP 212


>gi|328794509|ref|XP_003252082.1| PREDICTED: ribonuclease HII-like, partial [Apis mellifera]
          Length = 169

 Score =  224 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 81/167 (48%), Positives = 101/167 (60%), Gaps = 2/167 (1%)

Query: 42  VVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKAT 100
           V AA+ILDPNN   G+ DSKK+S KKRE L+E I   A+  +I+ AS   ID+ NI  AT
Sbjct: 1   VTAAVILDPNNPIEGLADSKKLSEKKREYLFEVIKEKALAWNIARASVSEIDQLNILHAT 60

Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160
           + A+  AV  L + P   L+DG   P D    A AV+KGDS+   I AASI+AKVTRDR 
Sbjct: 61  MLAMQRAVAGLSIKPNLVLVDGNRAP-DFGIAAQAVVKGDSLVQEIGAASILAKVTRDRE 119

Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           M    K YP YG   H GYPT  H   I E G + I+R +F P++ L
Sbjct: 120 MAELDKIYPQYGLSKHKGYPTQAHLAAIIEHGVNDIYRKSFAPVKRL 166


>gi|116512136|ref|YP_809352.1| ribonuclease HII [Lactococcus lactis subsp. cremoris SK11]
 gi|123025377|sp|Q02YP2|RNH2_LACLS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|116107790|gb|ABJ72930.1| RNase HII [Lactococcus lactis subsp. cremoris SK11]
          Length = 258

 Score =  224 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 83/197 (42%), Positives = 119/197 (60%), Gaps = 3/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            E E  +  + +  +AGIDEVGRGALAGPVV AA+IL  N    G+NDSKK+   K   +
Sbjct: 59  LEFEKELYSQEIELIAGIDEVGRGALAGPVVTAAVILPKNCKIRGLNDSKKVPKSKHHAI 118

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
             +I   A+ I I     + ID+ NI++AT  A+  AV  L + P   LID   +  DLP
Sbjct: 119 LSEIQEKALAIGIGIVDAEKIDEVNIYEATKIAMIQAVSKLSLKPEHLLIDAMVL--DLP 176

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +I GD+ S SIAAASI+AKVTRD +M+    ++P+Y F+ + GY TAKH   + +
Sbjct: 177 IAQTKIIHGDARSASIAAASIVAKVTRDEMMKDFALEFPEYDFEHNAGYGTAKHLAALTK 236

Query: 191 KGPSCIHRLTFRPLRNL 207
            G + IHR ++ P++++
Sbjct: 237 YGITRIHRKSYEPIKSM 253


>gi|317508413|ref|ZP_07966083.1| ribonuclease HII [Segniliparus rugosus ATCC BAA-974]
 gi|316253260|gb|EFV12660.1| ribonuclease HII [Segniliparus rugosus ATCC BAA-974]
          Length = 215

 Score =  224 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 74/195 (37%), Positives = 111/195 (56%), Gaps = 4/195 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREE 70
             E+++R   +  VAG+DE GRGA AGP+VVA+ +L P       G++DSK+++ +KRE 
Sbjct: 3   AFESVLRRAGLAAVAGVDEAGRGACAGPLVVASCVLKPRSARALPGLDDSKRLTAQKREW 62

Query: 71  LYEKI-TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L  +I   +A   +       +D   +H+A L+ +  AV  L  +P   L+DG  +P  L
Sbjct: 63  LEPRIFQQAASWHVVVMPPGEVDAMGVHQANLEGMRRAVAGLAEVPDYVLLDGFEVPR-L 121

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              A  V+ GD +   IAAAS++AKV RDR+M    + +P YGF +H GY TA H   + 
Sbjct: 122 GAPARRVVGGDRLVACIAAASVLAKVARDRIMAELDEAHPGYGFATHKGYCTAAHMAALA 181

Query: 190 EKGPSCIHRLTFRPL 204
           E GP   HR ++ P+
Sbjct: 182 ELGPCDQHRYSYAPV 196


>gi|183981819|ref|YP_001850110.1| ribonuclease HII protein RnhB [Mycobacterium marinum M]
 gi|238689245|sp|B2HJL9|RNH2_MYCMM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|183175145|gb|ACC40255.1| ribonuclease HII protein RnhB [Mycobacterium marinum M]
          Length = 239

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 79/198 (39%), Positives = 113/198 (57%), Gaps = 4/198 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE+ ++   + PVAG+DEVGRGA AGP+VVAA  L PN       ++DSKK++ K RE+L
Sbjct: 20  LESALQRSGLGPVAGVDEVGRGACAGPLVVAACALGPNRYESLAALDDSKKLTEKTREKL 79

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+   +       +D+  +H A ++ +  AV  L V P   L DG  +P  L 
Sbjct: 80  FPLICRYALAYHVVFIPSVEVDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP-GLS 138

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD+ +  IAAAS++AKV+RDRLM     +YP YGF  H GY T  H   + +
Sbjct: 139 VPSLPVIGGDAAAACIAAASVLAKVSRDRLMVAMDTQYPGYGFAEHKGYSTRAHTLALTQ 198

Query: 191 KGPSCIHRLTFRPLRNLS 208
            GP   HR +F  +R ++
Sbjct: 199 LGPCPEHRRSFINVRRVA 216


>gi|34497665|ref|NP_901880.1| ribonuclease HII [Chromobacterium violaceum ATCC 12472]
 gi|39932273|sp|Q7NPS3|RNH2_CHRVO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|34331005|gb|AAQ64053.1| ribonuclease HII [Chromobacterium violaceum ATCC 12472]
          Length = 198

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 83/182 (45%), Positives = 109/182 (59%), Gaps = 1/182 (0%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DE GRG LAG V  AA+ILDP     G+ DSK +S  +R+EL   I   A+   +
Sbjct: 6   RVAGVDEAGRGPLAGAVFAAAVILDPAKPIAGLADSKVLSEAQRDELAVLIKRDALAWCV 65

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +SAS + IDK NI  AT+ A+  AVE L V P  A IDG  +P+ LP    A++KGD+  
Sbjct: 66  ASASVEEIDKLNILHATMLAMTRAVEGLPVRPDLAQIDGNRVPKHLPVPGEAIVKGDAKV 125

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AASI+AK  RD  +      +P YGF  H GYPTA+H   I+  G    HR TF P
Sbjct: 126 AAISAASILAKTARDAELVALDALHPQYGFARHKGYPTAEHLAAIEAHGVLPAHRKTFGP 185

Query: 204 LR 205
           ++
Sbjct: 186 VK 187


>gi|332284293|ref|YP_004416204.1| ribonuclease HII [Pusillimonas sp. T7-7]
 gi|330428246|gb|AEC19580.1| ribonuclease HII [Pusillimonas sp. T7-7]
          Length = 220

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 87/183 (47%), Positives = 114/183 (62%), Gaps = 1/183 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84
           VAGIDE GRG LAGPV  AA+ILDP     G++DSKK+S  +RE L   +   A+   I+
Sbjct: 21  VAGIDEAGRGPLAGPVFAAAVILDPARPIKGLDDSKKLSPARREGLALAVREYALAWYIA 80

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           SA+ + ID  NI +AT+ A+  A E L +    ALIDG  +P+ LPC A A+I GD+   
Sbjct: 81  SATVEEIDTLNILQATMLAMRRACEGLSLPLAQALIDGNRVPKGLPCAAQAIIGGDASVA 140

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +I+AASI+AK  RD    + H+ YPDY FD H GY TA H   ++  GP   HR TF P+
Sbjct: 141 AISAASILAKTARDADCLLLHQAYPDYCFDQHKGYGTALHLARLQAYGPCPAHRRTFAPV 200

Query: 205 RNL 207
           + L
Sbjct: 201 KRL 203


>gi|15895039|ref|NP_348388.1| ribonuclease HII [Clostridium acetobutylicum ATCC 824]
 gi|39932446|sp|Q97I90|RNH2_CLOAB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|15024732|gb|AAK79728.1|AE007685_4 Ribonuclease HII [Clostridium acetobutylicum ATCC 824]
 gi|325509176|gb|ADZ20812.1| ribonuclease HII [Clostridium acetobutylicum EA 2018]
          Length = 254

 Score =  224 bits (572), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 83/205 (40%), Positives = 121/205 (59%), Gaps = 12/205 (5%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN-----NIPFGINDSKKI 63
           +  +E +          +AG+DEVGRG LAGP+V AA+IL+ N     ++  GINDSKK+
Sbjct: 55  KKLYEFDKQF---GNIVIAGVDEVGRGPLAGPIVGAAVILELNVEKDLDLILGINDSKKL 111

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           S KKR+EL E I   A+   I+S  +  IDK  I     +    A+  L+ +P   + DG
Sbjct: 112 SSKKRQELSEIIKEKALAWEIASLDNNEIDKKGISWCNNEIFKIAISKLKKVPELVISDG 171

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
            ++ + +  +   ++KGD+ S SIA ASIIAKV RD LM    K Y +YGF+S+VGY + 
Sbjct: 172 YAV-KGIGIKNHYIVKGDAQSASIACASIIAKVYRDNLMGEYAKSYSEYGFESNVGYGSK 230

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207
            H   IK+ G + IHR++F  L+N+
Sbjct: 231 DHIDAIKKFGTTPIHRMSF--LKNI 253


>gi|226366005|ref|YP_002783788.1| ribonuclease HII [Rhodococcus opacus B4]
 gi|254807984|sp|C1B2S6|RNH2_RHOOB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|226244495|dbj|BAH54843.1| ribonuclease HII [Rhodococcus opacus B4]
          Length = 226

 Score =  224 bits (572), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 77/197 (39%), Positives = 113/197 (57%), Gaps = 4/197 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREEL 71
           +E+ +    + PVAG+DE GRGA AGP+VVAA +L P   P    ++DSKK++ + REEL
Sbjct: 19  MESALVRSGLGPVAGVDEAGRGACAGPLVVAACVLAPKPYPALARLDDSKKLTERTREEL 78

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  IT  A+  S+ S     +D+  +H A ++ +  AV  L   P   L DG  +P  LP
Sbjct: 79  FPAITRLAVAWSVVSFPADEVDRMGVHVANIEGMRRAVAGLTTTPGYVLTDGFRVP-GLP 137

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD+ +  IAAAS++AKV+RDR+M    + +P YGF  H GY T  H   ++ 
Sbjct: 138 APSLPVIGGDAAAACIAAASVLAKVSRDRVMVAMDETHPGYGFAIHKGYNTPAHLAALEV 197

Query: 191 KGPSCIHRLTFRPLRNL 207
            GP   HR ++  +  L
Sbjct: 198 LGPCPEHRRSWSNVAAL 214


>gi|254232994|ref|ZP_04926321.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium
           tuberculosis C]
 gi|124602053|gb|EAY61063.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium
           tuberculosis C]
          Length = 264

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 78/198 (39%), Positives = 113/198 (57%), Gaps = 4/198 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREEL 71
           LE+ +    + PVAG+DEVGRGA AGP+VVAA +L P  I     ++DSKK+S + RE+L
Sbjct: 23  LESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDDSKKLSEQAREKL 82

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+   +       +D+  +H A ++ +  AV  L V P   L DG  +P  LP
Sbjct: 83  FSLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVP-GLP 141

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD+ +  IAAAS++AKV+RDR+M      +P YGF  H GY T  H + +  
Sbjct: 142 MPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAHSRALAR 201

Query: 191 KGPSCIHRLTFRPLRNLS 208
            GP   HR +F  +R ++
Sbjct: 202 LGPCPQHRYSFINVRRVA 219


>gi|213964538|ref|ZP_03392738.1| ribonuclease HII [Corynebacterium amycolatum SK46]
 gi|213952731|gb|EEB64113.1| ribonuclease HII [Corynebacterium amycolatum SK46]
          Length = 205

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 76/195 (38%), Positives = 105/195 (53%), Gaps = 4/195 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREEL 71
           +E  + ++ + PVAG+DE GRGA AGP+V+AA  L    I     + DSKK++   RE L
Sbjct: 1   MEVALAKRGLGPVAGVDEAGRGACAGPIVIAACCLPERPIAELDKLTDSKKLTPAARERL 60

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   AI   +++    YID+  I  A +  +  AV  L+  P   L D   +     
Sbjct: 61  FPLIQRFAISFCVTTIPASYIDQFGIQDANVTGMRRAVAGLEQRPGYVLTDALKV-SGFT 119

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                VI GDS    IAAAS++AKVTRDR+M    +KYPDYG   H GY TA H + I  
Sbjct: 120 APYLPVIGGDSTCRCIAAASVLAKVTRDRIMVDLSEKYPDYGLAGHKGYGTASHMEAISR 179

Query: 191 KGPSCIHRLTFRPLR 205
            G +  HR ++R +R
Sbjct: 180 HGATPEHRWSYRNVR 194


>gi|239948099|ref|ZP_04699852.1| ribonuclease HII [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239922375|gb|EER22399.1| ribonuclease HII [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 193

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 89/179 (49%), Positives = 114/179 (63%), Gaps = 2/179 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
           + VAGIDE GRG LAGPVV +A+I+D  NI  GI DSKK+S KKRE LYE+ITS+ + S 
Sbjct: 15  YIVAGIDEAGRGPLAGPVVASAVIIDNANIITGIKDSKKLSKKKRELLYEQITSNYVWSA 74

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +  SH  ID+ NI +AT  A   A  NL   P   L+DG     D   +  +++ GD++S
Sbjct: 75  AIISHTEIDEINILEATKKACSIAAANLTTKPEIVLVDGNMQFND--ERFVSIVNGDNLS 132

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           LSIAAASIIAKVTRDRLM     ++P Y +  + GY T +H + I   G S  HR +FR
Sbjct: 133 LSIAAASIIAKVTRDRLMLDLSAEFPQYLWHKNSGYGTKEHIEAINTHGLSPYHRRSFR 191


>gi|291278613|ref|YP_003495448.1| ribonuclease HII [Deferribacter desulfuricans SSM1]
 gi|290753315|dbj|BAI79692.1| ribonuclease HII [Deferribacter desulfuricans SSM1]
          Length = 187

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 77/176 (43%), Positives = 106/176 (60%), Gaps = 1/176 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
            G+DEVGRG  AGP+VV+A+IL P+     I DSKKIS K+RE+L + I   A+  S++ 
Sbjct: 7   VGLDEVGRGCFAGPLVVSAVILPPDFKDERIIDSKKISEKQREKLAQYIKDIALDYSVAV 66

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
             ++ IDK NI +AT  A++ A+  L        ID   +     C+   V KG+S   +
Sbjct: 67  VCNKVIDKINILQATKQAMHIAISRLNNQYSFIAIDAVKLKNFYGCKINPVNKGESKFQN 126

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           IAAASIIAKV RD LM+  H KYP+Y +  + GY T +H + IK+ G   +HR TF
Sbjct: 127 IAAASIIAKVYRDNLMKKLHLKYPEYNWYKNKGYGTKEHIEAIKKYGICELHRKTF 182


>gi|13476167|ref|NP_107737.1| ribonuclease HII [Mesorhizobium loti MAFF303099]
 gi|39932447|sp|Q986D0|RNH2_RHILO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|14026927|dbj|BAB53523.1| ribonuclease HII [Mesorhizobium loti MAFF303099]
          Length = 231

 Score =  224 bits (571), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 102/202 (50%), Positives = 137/202 (67%), Gaps = 2/202 (0%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           I E+P F  E       +WPVAG+DE GRG LAGPVV AA++LDP NIP G++DSK++SH
Sbjct: 14  IVEKPDFSFETKAMADGLWPVAGMDEAGRGPLAGPVVAAAVVLDPANIPEGLDDSKRLSH 73

Query: 66  KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
            +RE L+ +I  SA  +S++S S + ID  NI KA+L+A+  A+  L V P+ AL DGR 
Sbjct: 74  FQREALFLRILGSAQAVSMASISAEGIDGSNILKASLEAMRRALVGLSVRPKLALADGRD 133

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +P  LPC   A+IKGD  S SIAAASI+AKV RDR+M      +  YGF+ H+GY TA+H
Sbjct: 134 VPPGLPCDGRALIKGDQRSQSIAAASIVAKVMRDRMMCGCGSHHDRYGFEVHMGYATARH 193

Query: 185 QQVIKEKGP-SCIHRLTFRPLR 205
           +  I+  GP + +HR++F P R
Sbjct: 194 RTAIETHGPVARLHRVSFAPFR 215


>gi|313754409|pdb|3O3F|A Chain A, T. Maritima Rnase H2 D107n In Complex With Nucleic Acid
           Substrate And Magnesium Ions
 gi|313754415|pdb|3O3H|A Chain A, T. Maritima Rnase H2 D107n In Complex With Nucleic Acid
           Substrate And Manganese Ions
          Length = 222

 Score =  224 bits (571), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 81/198 (40%), Positives = 108/198 (54%), Gaps = 18/198 (9%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGP-------VVVAAIILDPNNIPFGINDSKKISHKKRE 69
            + +K    VAG+DE GRG LAGP       +              GINDSK++S  KRE
Sbjct: 4   ELYKKEFGIVAGVDEAGRGCLAGPVVAAAVVL---------EKEIEGINDSKQLSPAKRE 54

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L ++I   A + I  AS + ID +NI  AT  A+  A+ENL V P   L++G+ I  +L
Sbjct: 55  RLLDEIMEKAAVGIGIASPEEIDLYNIFNATKLAMNRALENLSVKPSFVLVNGKGI--EL 112

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                 ++KGD  S  I AASI+AKV RDRLM   H+ YP + F  H GY T +H   I+
Sbjct: 113 SVPGTCLVKGDQKSKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKHKGYATKEHLNEIR 172

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + G   IHRL+F P+  L
Sbjct: 173 KNGVLPIHRLSFEPVLEL 190


>gi|296171466|ref|ZP_06852752.1| ribonuclease HII [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894152|gb|EFG73912.1| ribonuclease HII [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 242

 Score =  224 bits (571), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 76/199 (38%), Positives = 114/199 (57%), Gaps = 4/199 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE+ +    + PVAG+DEVGRGA AGP+VVAA +L P  +     ++DSKK++   RE+L
Sbjct: 20  LESALYRSGLGPVAGVDEVGRGACAGPLVVAACVLGPGRLESLAALDDSKKLTEGAREKL 79

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+   +       +D+  +H A ++ +  AV  L + P   L DG  +P  LP
Sbjct: 80  FPLIRRYALAYHVVFIPPAEVDRRGVHVANIEGMRRAVAGLSLRPGYVLSDGFRVP-GLP 138

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD+++  IAAAS++AKV+RDRLM      +P YGF  H GY T  H   + +
Sbjct: 139 VPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMDADHPGYGFAEHKGYSTPAHSTALTQ 198

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            GP   HR +F  +R +++
Sbjct: 199 LGPCPEHRRSFINVRRVAL 217


>gi|300858737|ref|YP_003783720.1| ribonuclease HII [Corynebacterium pseudotuberculosis FRC41]
 gi|300686191|gb|ADK29113.1| Ribonuclease HII [Corynebacterium pseudotuberculosis FRC41]
 gi|302206444|gb|ADL10786.1| Ribonuclease HII [Corynebacterium pseudotuberculosis C231]
 gi|302331000|gb|ADL21194.1| ribonuclease HII [Corynebacterium pseudotuberculosis 1002]
          Length = 240

 Score =  224 bits (571), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 72/195 (36%), Positives = 104/195 (53%), Gaps = 4/195 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREEL 71
            E  + +  + PVAGIDE GRG+  GP+ +AA IL    I     + DSKK+S + REEL
Sbjct: 31  FEGTLEKWGLGPVAGIDEAGRGSCCGPITIAACILPSRPIAALATLTDSKKLSSRMREEL 90

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y  I   A+  SI   S   ID++ I  A +  +  A+  L   P   LID   +P  L 
Sbjct: 91  YPLIKKYAVAWSILHISASEIDRYGIQHANISGMRRAIALLSKQPGYVLIDAMRVP-GLT 149

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
           C +  +I GD+ +  IAAAS++AK +RD LM    ++YP YG   H GY T  H   ++ 
Sbjct: 150 CPSLPIIGGDTAARCIAAASVLAKQSRDELMIDLDREYPGYGLGDHKGYGTKSHIDAVRR 209

Query: 191 KGPSCIHRLTFRPLR 205
            G +  HR ++  ++
Sbjct: 210 HGGTPEHRYSYANVK 224


>gi|239831265|ref|ZP_04679594.1| Ribonuclease HII [Ochrobactrum intermedium LMG 3301]
 gi|239823532|gb|EEQ95100.1| Ribonuclease HII [Ochrobactrum intermedium LMG 3301]
          Length = 281

 Score =  224 bits (571), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 96/204 (47%), Positives = 133/204 (65%), Gaps = 2/204 (0%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
            IP  P F  E  +  + +  + GIDE GRG LAGPVV AA++LD +N+P G++DSK+++
Sbjct: 74  DIPIAPDFSEEKRLLSRGLKHIVGIDEAGRGPLAGPVVAAAVVLDIDNLPDGLDDSKRLT 133

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
             +RE LYE I + AI +S++S S + ID  +I KA L+A+  A   L + P  ALIDGR
Sbjct: 134 AARREALYEIILAKAITVSVASLSARSIDGSDIRKAALEAMRRASIGLTLRPCHALIDGR 193

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +P  L C   A++KGD  S+SIAAASI+AKVTRDR+M  A   +P YG + H GY T +
Sbjct: 194 DVPPGLACPGSALVKGDQRSISIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATER 253

Query: 184 HQQVIKEKGPSC-IHRLTFRPLRN 206
           H+  I+  GP   IHR TF P+++
Sbjct: 254 HRAAIETAGPVPGIHRYTFAPIKD 277


>gi|325923964|ref|ZP_08185553.1| RNase HII [Xanthomonas gardneri ATCC 19865]
 gi|325545547|gb|EGD16812.1| RNase HII [Xanthomonas gardneri ATCC 19865]
          Length = 242

 Score =  224 bits (571), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 80/185 (43%), Positives = 118/185 (63%), Gaps = 2/185 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-I 81
             +AG+DE GRG LAGPV VAA++ DP+     G++DSK+++ ++RE+ Y +I   A+  
Sbjct: 31  RLIAGVDEAGRGPLAGPVAVAAVVFDPSKPRINGLDDSKQLTAERREQAYARIVERALAW 90

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           S+     + ID+ NI++AT+  +  AVE +  +   A IDG  +P+ LPC A A+I GD+
Sbjct: 91  SVVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDA 150

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +  +I AASI+AKVTRDRLM   H ++P+Y FD H GY T  H   ++  GP   HR +F
Sbjct: 151 LDRAIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYATPVHLAALQTHGPCPQHRRSF 210

Query: 202 RPLRN 206
            P+R 
Sbjct: 211 APVRR 215


>gi|319786395|ref|YP_004145870.1| ribonuclease H [Pseudoxanthomonas suwonensis 11-1]
 gi|317464907|gb|ADV26639.1| Ribonuclease H [Pseudoxanthomonas suwonensis 11-1]
          Length = 233

 Score =  223 bits (570), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 84/187 (44%), Positives = 114/187 (60%), Gaps = 1/187 (0%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +    VAG+DE GRG LAGPV VAA++LDP     G++DSKK+SH +RE+LY +I   A+
Sbjct: 26  RKQLRVAGVDEAGRGPLAGPVAVAAVVLDPRRRIRGLDDSKKLSHAQREDLYPRIVERAL 85

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
              +       ID+ NI +ATL+ +   V  L    + A IDG  +P  LPC A A+I G
Sbjct: 86  AWHVELVPVDEIDRLNILQATLEGMRRCVLALGEHAQLARIDGNMLPRSLPCMAEAIIGG 145

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D++  +I AASI+AKV+RDRLM   H+++P YGF  H GY T  H   +   GP   HR 
Sbjct: 146 DALEPAIMAASILAKVSRDRLMCQLHEEFPVYGFAEHKGYATPAHLAALASHGPCVHHRR 205

Query: 200 TFRPLRN 206
           +F P+R 
Sbjct: 206 SFAPVRQ 212


>gi|294668304|ref|ZP_06733408.1| hypothetical protein NEIELOOT_00217 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309758|gb|EFE51001.1| hypothetical protein NEIELOOT_00217 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 196

 Score =  223 bits (570), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 82/182 (45%), Positives = 108/182 (59%), Gaps = 1/182 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG L G V  AA+IL P+    G+ DSKK+S KKR+ L E+I   A+   ++S
Sbjct: 7   AGVDEAGRGPLVGSVFAAAVILPPDYDLAGLADSKKLSEKKRDALAEEIRRQAVGWCVAS 66

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A    I + NI  A + A+  AVE L V P+   IDG  +PE L  +A AV+KGD    +
Sbjct: 67  ADVAEIAELNILHAAMLAMRRAVEGLAVPPQKVWIDGNRVPEGLAVEAEAVVKGDDKIAA 126

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AASI+AK  RD  M    ++YP YGF+ H GY TA H   +K+ G    HR  F P+R
Sbjct: 127 ISAASILAKTARDAEMYALAERYPQYGFEKHKGYGTATHLAALKQYGALPEHRAGFAPVR 186

Query: 206 NL 207
            L
Sbjct: 187 EL 188


>gi|289766192|ref|ZP_06525570.1| ribonuclease HII [Fusobacterium sp. D11]
 gi|289717747|gb|EFD81759.1| ribonuclease HII [Fusobacterium sp. D11]
          Length = 213

 Score =  223 bits (570), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 80/194 (41%), Positives = 115/194 (59%), Gaps = 10/194 (5%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKIT 76
           + +     V G+DE GRG LAGPVV AA+IL   +     INDSKK++ KKRE+LY+ I 
Sbjct: 7   LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSKKLTEKKREKLYDIIM 66

Query: 77  SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS--------ALIDGRSIPED 128
            +  +++  ++ + IDK NI  A   A+  A+++L+ I +          L+DG    ++
Sbjct: 67  KNFYVAVGISTVEEIDKMNILNADFLAMRRALKDLENIKKDKKDKKEYIVLVDGNLKIKE 126

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
              +   ++KGD+ SLS+AAASIIAKVTRDR M+     YPDY F+ H GY T  H + I
Sbjct: 127 YSGKQLPIVKGDAKSLSVAAASIIAKVTRDRFMKDLANIYPDYSFEKHKGYGTKAHIEAI 186

Query: 189 KEKGPSC-IHRLTF 201
           K+KG    +HR  F
Sbjct: 187 KDKGAIEGVHRKVF 200


>gi|58038820|ref|YP_190784.1| ribonuclease HII [Gluconobacter oxydans 621H]
 gi|81352528|sp|Q5FU18|RNH2_GLUOX RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|58001234|gb|AAW60128.1| Ribonuclease HII [Gluconobacter oxydans 621H]
          Length = 207

 Score =  223 bits (570), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 88/204 (43%), Positives = 120/204 (58%), Gaps = 10/204 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISH 65
            P + LEA     +   V GIDEVGRG LAGPVV +A+         +   ++DSKK++ 
Sbjct: 1   MPDYALEAA----HGGLVVGIDEVGRGPLAGPVVASAVAFTAPPSETLSSLLDDSKKLTA 56

Query: 66  KKREELYEKIT--SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
           ++R   YE +     A+I I +AS   I++ NI +A   A+  A+  L   P  AL+DG+
Sbjct: 57  RRRMLAYEALMADEQALIGIGAASVAEIERINIAQACYLAMRRALSRLGCTPDLALVDGK 116

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
             P+ LPC    VI GD ISLSIAAASIIAKVTRDRLM     ++  YG++ + GY TA 
Sbjct: 117 HAPK-LPCPIKMVIGGDGISLSIAAASIIAKVTRDRLMVRLAVRHDAYGWERNAGYGTAA 175

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H Q +K +G +  HR  F P+RN+
Sbjct: 176 HMQGLKLRGVTPHHRRGFAPIRNM 199


>gi|145589618|ref|YP_001156215.1| ribonuclease H [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|189043639|sp|A4SYT7|RNH2_POLSQ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|145048024|gb|ABP34651.1| RNase HII [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 196

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 85/201 (42%), Positives = 110/201 (54%), Gaps = 26/201 (12%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAII----------LDPNNIPFGINDSKKISHKKREEL 71
           NM  V G+DE GRG L                    LDP N   G+ DSKK+S  +RE L
Sbjct: 2   NMIWVCGVDEAGRGPL----------VGAVVAGAVVLDPENPIEGLKDSKKLSAVRREFL 51

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL----QVIPRSALIDGRSIP 126
           YE+I   A    +  AS   ID  NI +AT+ A+  AVE+L       P  ALIDG   P
Sbjct: 52  YEQIMEKAKAWGVGEASPTEIDSINILQATMLAMRRAVEDLAARLGEWPSKALIDGNRCP 111

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           E L   A A++KGD+   +I+AASI+AKVTRDR M   H+++P YGF  H+GYPT  H  
Sbjct: 112 E-LSIAAEAIVKGDTKEPAISAASIVAKVTRDRQMIALHEQHPQYGFSQHMGYPTEAHFA 170

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            +K+ G    HR +F P+R +
Sbjct: 171 ALKQYGVCTEHRKSFAPVRRV 191


>gi|330752580|emb|CBL87526.1| ribonuclease HII [uncultured Flavobacteria bacterium]
          Length = 191

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 68/179 (37%), Positives = 101/179 (56%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG LAGPV  A +IL        INDSK ++ KKR  L   I   AI   ++ 
Sbjct: 12  AGVDEAGRGCLAGPVTAAVVILPKGITLPQINDSKILTEKKRYNLRSLIEKCAIDFQVAH 71

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
                IDK NI  +T+ A++ A++ L+  P+  ++DG             ++KGD    +
Sbjct: 72  VFQDEIDKINILNSTIKAMHLAIKKLKETPQYIIVDGNKFYPYKDVPYKCIVKGDGKYQN 131

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  MR    ++P+YG++ + GYPT  H++ I++ G +  HR +F+ L
Sbjct: 132 IAAASILAKTYRDDYMRKIEYEFPEYGWNKNKGYPTVTHRKAIEKFGITEHHRNSFKLL 190


>gi|325680872|ref|ZP_08160410.1| ribonuclease HII [Ruminococcus albus 8]
 gi|324107652|gb|EGC01930.1| ribonuclease HII [Ruminococcus albus 8]
          Length = 204

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 87/184 (47%), Positives = 115/184 (62%), Gaps = 2/184 (1%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78
                  V G DE GRG LAG V  AA++ D + +  GINDSKK++ KKREEL+E I   
Sbjct: 10  YRDKYDVVCGCDEAGRGPLAGDVFAAAVVFDKDTVIEGINDSKKLTAKKREELFEVIVEK 69

Query: 79  AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137
           A+  SI  A+ + I+K NI    + A+  AVE++++ P   LIDG   PE L C A AV+
Sbjct: 70  ALDFSIQCATVEEIEKFNILNCAMLAMKRAVESMKIKPDVCLIDGNKTPE-LECDAIAVV 128

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGD+ S +IAAASI+AKV RDR M    KK+P++ F+ H GY T  H Q+I + G S IH
Sbjct: 129 KGDAQSQAIAAASILAKVARDRYMLEMAKKFPEWQFEKHKGYGTKLHYQMIDKYGESPIH 188

Query: 198 RLTF 201
           R +F
Sbjct: 189 RPSF 192


>gi|150021773|ref|YP_001307127.1| ribonuclease HII [Thermosipho melanesiensis BI429]
 gi|189043672|sp|A6LP91|RNH2_THEM4 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|149794294|gb|ABR31742.1| Ribonuclease H [Thermosipho melanesiensis BI429]
          Length = 216

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 76/186 (40%), Positives = 115/186 (61%), Gaps = 6/186 (3%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
             VAG+DE GRG L GPVV +A++L      +GI DSKK++ K+REEL+ +I  ++   I
Sbjct: 1   MIVAGVDEAGRGPLFGPVVASAVVLKKE--IYGITDSKKLTLKQREELFMEIIRNSYFGI 58

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
             AS   IDK NI  AT  A+  A+  L  ++     L+DG+++  D   ++  ++KGD 
Sbjct: 59  GFASSSEIDKLNILHATELAMNRALAMLERKIRFDMVLVDGKNLKLDY--KSKCIVKGDV 116

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +   I+AASIIAKV RD++M    KK+ +Y  + H GYPT  H ++I++ G +  HRLTF
Sbjct: 117 LIKEISAASIIAKVVRDKIMTFYSKKFSNYALEKHKGYPTKDHIKLIEKYGLTPEHRLTF 176

Query: 202 RPLRNL 207
           +P+  +
Sbjct: 177 KPITKM 182


>gi|325266705|ref|ZP_08133381.1| ribonuclease HII [Kingella denitrificans ATCC 33394]
 gi|324981814|gb|EGC17450.1| ribonuclease HII [Kingella denitrificans ATCC 33394]
          Length = 202

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 77/180 (42%), Positives = 104/180 (57%), Gaps = 1/180 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG L G V  AA+IL  +    G+ DSKK+S KKR+EL  +I + A    I+ 
Sbjct: 13  AGVDEAGRGCLVGSVFAAAVILPAHFDLRGLTDSKKLSEKKRDELAVQIKAQAAAYCIAR 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A    I + NI  AT+ A+  AV+ L+  P    IDG  +P DL   A  V+KGD+   +
Sbjct: 73  ADVGEIAQLNILHATMLAMKRAVQGLEKQPAKVWIDGNRMPPDLGVPAECVVKGDAKIAA 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           I+AAS++AKV RD  M   H++YP YGF  H GY TA H   + + G    HR  F P++
Sbjct: 133 ISAASVLAKVARDAEMYALHERYPQYGFAQHKGYGTAAHLAALAQFGALPEHRADFAPVK 192


>gi|51246658|ref|YP_066542.1| ribonuclease HII [Desulfotalea psychrophila LSv54]
 gi|81641223|sp|Q6AJE5|RNH2_DESPS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|50877695|emb|CAG37535.1| probable ribonuclease HII [Desulfotalea psychrophila LSv54]
          Length = 225

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 91/201 (45%), Positives = 127/201 (63%), Gaps = 7/201 (3%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           +F LE  +       +AG DEVGRG LAGPV+ AA+IL  +       DSK +SHKKR  
Sbjct: 15  NFFLERSLHNLGYDIIAGTDEVGRGPLAGPVIAAAVILPADCDHHLFQDSKILSHKKRVH 74

Query: 71  LYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGR-SI 125
           L++ +T   A I I + S + ID+ NI +A+L A+  A+E+L      P   L+DG+  +
Sbjct: 75  LFQLLTEIDAFIGIGTVSEKIIDEINILQASLLAMKLAIEDLASNCSRPSFLLVDGKFKV 134

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P DL     A+IKG+S S SIAAASI+AKVTRDR M+  H +YP YGF+++ GYPT KH+
Sbjct: 135 PIDLA--QVALIKGESKSASIAAASIVAKVTRDRYMQDLHSQYPQYGFNTNSGYPTKKHR 192

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
           + I E G +C HR +F+ ++ 
Sbjct: 193 EAIGEFGITCYHRRSFKGVKE 213


>gi|171463285|ref|YP_001797398.1| Ribonuclease H [Polynucleobacter necessarius subsp. necessarius
           STIR1]
 gi|238689054|sp|B1XTV7|RNH2_POLNS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|171192823|gb|ACB43784.1| Ribonuclease H [Polynucleobacter necessarius subsp. necessarius
           STIR1]
          Length = 197

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 84/197 (42%), Positives = 110/197 (55%), Gaps = 26/197 (13%)

Query: 25  PVAGIDEVGRGALAGPVVVAAII----------LDPNNIPFGINDSKKISHKKREELYEK 74
            V G+DE GRG L                    LDPNN   G+ DSKK++  +RE LYE+
Sbjct: 5   WVCGVDEAGRGPL----------VGAVVAGAVVLDPNNPIEGLKDSKKLTAARREYLYEQ 54

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL----QVIPRSALIDGRSIPEDL 129
           I   A    +  AS   ID+ NI +AT+ A+  A+E+L       P  ALIDG   PE L
Sbjct: 55  IMEKAKAWGVGEASPTEIDEINILQATMLAMRRAIEDLATRLGAWPDKALIDGNRCPE-L 113

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P  A A+IKGD+   +I+AASI+AKVTRDR M   H+++P+YGF  H+GYPT  H   +K
Sbjct: 114 PIAAEAIIKGDTKEPAISAASIVAKVTRDRQMMSLHERHPEYGFAQHMGYPTEAHFAALK 173

Query: 190 EKGPSCIHRLTFRPLRN 206
           + G    HR  F P+R 
Sbjct: 174 QYGACDQHRRCFSPVRK 190


>gi|77919812|ref|YP_357627.1| ribonuclease HII [Pelobacter carbinolicus DSM 2380]
 gi|97189130|sp|Q3A2F0|RNH2_PELCD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|77545895|gb|ABA89457.1| RNase HII [Pelobacter carbinolicus DSM 2380]
          Length = 209

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 81/203 (39%), Positives = 108/203 (53%), Gaps = 20/203 (9%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN---------NIPFGINDSKKIS 64
            E  +  +    +AGIDE GRG LAG                         G+NDSKKIS
Sbjct: 15  FEQRLSRQGYRRIAGIDEAGRGPLAG---------PVVAAAVVLPPVFDLPGLNDSKKIS 65

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            K RE+L+ +I   A+   I  AS Q +D  N+ +ATL A+  A++ L       L+DG 
Sbjct: 66  AKLREKLFPQIRRQALDYGIGLASAQEVDGLNVLQATLLAMRRALDRLAQPADYLLVDGI 125

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           + P  LP     + +GDS SLSIAAAS++AKV RDRLM     ++P+YGF  H GY +A 
Sbjct: 126 T-PVPLPLPQKTLKQGDSRSLSIAAASVLAKVVRDRLMTTYDARFPEYGFAGHKGYGSAA 184

Query: 184 HQQVIKEKGPSCIHRLTFRPLRN 206
           H+  I   GP  +HR TFR +R 
Sbjct: 185 HRAAIARLGPCPLHRATFRGVRE 207


>gi|38234094|ref|NP_939861.1| ribonuclease HII [Corynebacterium diphtheriae NCTC 13129]
 gi|73917606|sp|Q6NGJ8|RNH2_CORDI RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|38200356|emb|CAE50042.1| ribonuclease HII [Corynebacterium diphtheriae]
          Length = 229

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 71/195 (36%), Positives = 103/195 (52%), Gaps = 4/195 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREEL 71
            E  + +  + PVAG+DE GRG+  GP+ +AA I+    I     + DSKK+S  KR EL
Sbjct: 24  FEVTLDKHGLGPVAGVDEAGRGSCCGPITIAACIMPQRPIAQLQALTDSKKLSAAKRAEL 83

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y  I   A+  SI   S   ID+  I  A +  +  A+E L V P   L D   +P  L 
Sbjct: 84  YPLIKKYALAWSIIHISAAEIDREGIQHANIFGMRRAIEKLDVAPGYVLTDAMKVP-GLR 142

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
           C +  +I GD+    IAAAS++AK +RD +M     KYP+YG + H GY T  H   ++ 
Sbjct: 143 CPSLPIIGGDAAVRCIAAASVLAKHSRDLIMDDLGGKYPEYGLEDHKGYGTKSHMDAVRH 202

Query: 191 KGPSCIHRLTFRPLR 205
            G +  HR ++  ++
Sbjct: 203 HGATPEHRYSYSNVK 217


>gi|313896353|ref|ZP_07829906.1| ribonuclease HII [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975152|gb|EFR40614.1| ribonuclease HII [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 258

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 93/212 (43%), Positives = 118/212 (55%), Gaps = 18/212 (8%)

Query: 13  ELEAMVREK----------------NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG 56
             E M RE+                    VAG+DE GRG LAGPV VAA IL        
Sbjct: 43  RYERMYRERKRLAAMYAYERAAAARGHILVAGVDEAGRGPLAGPVAVAAAILPKELYLPR 102

Query: 57  INDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP 115
           +NDSKK+S K R EL+E+IT  AI   ++      ID+ NI +AT   +Y AV  L   P
Sbjct: 103 LNDSKKLSAKVRAELFEEITEKAIAYHVTLIDAAEIDRINILQATRCGMYEAVAALTPAP 162

Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
              L+D   +P+ L     ++IKGD+ S SIAAASI+AKVTRDRLM     +YP YGF  
Sbjct: 163 EEVLVDAVELPQ-LRMPVQSIIKGDAKSASIAAASILAKVTRDRLMERYDTEYPGYGFAG 221

Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           H GY TA+H   I+  G + IHR TF P+R++
Sbjct: 222 HKGYGTAEHIAAIRALGVTPIHRRTFEPIRSM 253


>gi|290968507|ref|ZP_06560046.1| ribonuclease HII [Megasphaera genomosp. type_1 str. 28L]
 gi|290781503|gb|EFD94092.1| ribonuclease HII [Megasphaera genomosp. type_1 str. 28L]
          Length = 264

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 93/197 (47%), Positives = 126/197 (63%), Gaps = 2/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +E E M   + ++ +AGIDE GRG +AGPV++AA+IL P     G+NDSKKI+  KRE L
Sbjct: 62  YEPENMFYRQGIYEIAGIDEAGRGPVAGPVMIAAVILPPFWECAGLNDSKKIAPSKREAL 121

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           YEKI   A+ +S  +     ID  +I+ AT   +Y AV+ L V P++ L+D   + E L 
Sbjct: 122 YEKIMQEAVAVSCIAKERAEIDVADIYHATRQGMYEAVQALAVPPKAVLVDAMPLSE-LT 180

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++I GD+IS SIAAASIIAKVTRDR+MR   K YP YGF  H GY T  H   I++
Sbjct: 181 VPHRSLIHGDAISASIAAASIIAKVTRDRVMREYDKVYPQYGFAVHKGYLTQAHADAIRK 240

Query: 191 KGPSCIHRLTFRPLRNL 207
            GP  IHR +F P++++
Sbjct: 241 FGPCPIHRHSFEPIKSI 257


>gi|167630260|ref|YP_001680759.1| ribonuclease hii [Heliobacterium modesticaldum Ice1]
 gi|167593000|gb|ABZ84748.1| ribonuclease hii [Heliobacterium modesticaldum Ice1]
          Length = 205

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 80/195 (41%), Positives = 112/195 (57%), Gaps = 1/195 (0%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E+++R K    +AG+DE GRG+LAGPVV AA+IL    +  G+NDSKK+S  +RE L 
Sbjct: 7   ERESLLRRKGFHVIAGVDEAGRGSLAGPVVAAAVILPLGCMMEGLNDSKKLSPARREALA 66

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I   A+   I   S Q ID+  I  +T  A+  A++ L   P   ++DG         
Sbjct: 67  VEIKRLALAWGIGIVSSQVIDRIGIVPSTFRAMSLAIDRLGDRPDYLIVDGNQKVPGYEG 126

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              A+I GD+++  +AAASI+AKV RD LM+     +P YGF+ H GY T  H+  I E+
Sbjct: 127 TQEALIDGDALAAPVAAASILAKVVRDGLMKRYSLFFPGYGFEQHKGYGTQAHRSAILEQ 186

Query: 192 GPSCIHRLTFRPLRN 206
           G   +HR TF  LR 
Sbjct: 187 GTCLLHRETFVHLRR 201


>gi|83589825|ref|YP_429834.1| ribonuclease H [Moorella thermoacetica ATCC 39073]
 gi|97182952|sp|Q2RJU8|RNH2_MOOTA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|83572739|gb|ABC19291.1| RNase HII [Moorella thermoacetica ATCC 39073]
          Length = 206

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 74/192 (38%), Positives = 108/192 (56%), Gaps = 2/192 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +  E  ++ + +  +AG+DE GRG LAGPV  AA+IL P     G+NDSKK+   +R EL
Sbjct: 15  YAWERRLQRQGVARIAGVDEAGRGPLAGPVTAAAVILPPGLFIAGLNDSKKVPPARRREL 74

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
              I   ++   I   S + ID  NI  A+  A+  A+  L + P   LIDG  +P  L 
Sbjct: 75  AAVIKKESLAWGIGWVSVKEIDCLNILAASRWAMRRALSALAIRPDHVLIDGMELP-GLK 133

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                ++ GD++S SIAAASI+AKV RD LM      +  YG   + GYPT +H++ ++ 
Sbjct: 134 IPQTPLVGGDALSASIAAASILAKVARDELMVAYDAVFQGYGLAGNKGYPTREHREALRR 193

Query: 191 KGPSCIHRLTFR 202
            GP  +HR +F+
Sbjct: 194 LGPCALHRRSFK 205


>gi|296268970|ref|YP_003651602.1| ribonuclease H [Thermobispora bispora DSM 43833]
 gi|296091757|gb|ADG87709.1| Ribonuclease H [Thermobispora bispora DSM 43833]
          Length = 241

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 79/198 (39%), Positives = 118/198 (59%), Gaps = 4/198 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +  E  +  K   PVAG+DE GRGA AGP+VVA++IL       G+ DSK +    RE L
Sbjct: 19  YGYERALARKGFAPVAGVDEAGRGACAGPLVVASVIL--GRRIAGLADSKLLGEPVRERL 76

Query: 72  YEKITSSAIISISS-ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           ++++ ++A            ID+H +HK  +  +  AV  L + P   L+DG  +P  LP
Sbjct: 77  HDRVVAAAQAVSVVVIPPGEIDEHGLHKCNVAGVRRAVAGLGLEPGYILVDGFPVP-GLP 135

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             + A+ KGD ++  +AAASI+AKVTRDRLMR  H++YP+YGFD++ GY TA H++ +  
Sbjct: 136 APSLAMWKGDRVAACVAAASIVAKVTRDRLMRRLHERYPEYGFDTNKGYVTAAHRRALAR 195

Query: 191 KGPSCIHRLTFRPLRNLS 208
            GP   HR +F  +  ++
Sbjct: 196 YGPCPEHRFSFVTVARVT 213


>gi|120403186|ref|YP_953015.1| ribonuclease HII [Mycobacterium vanbaalenii PYR-1]
 gi|166226631|sp|A1T759|RNH2_MYCVP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|119956004|gb|ABM13009.1| RNase HII [Mycobacterium vanbaalenii PYR-1]
          Length = 249

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 79/197 (40%), Positives = 114/197 (57%), Gaps = 4/197 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE+ +    + PVAG+DEVGRGA AGP+VVAA +L PN +     ++DSKK++  +RE L
Sbjct: 20  LESALYRAGLGPVAGVDEVGRGACAGPLVVAACVLGPNRLESLAALDDSKKLNENERERL 79

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+   +     Q +D+  +H A ++ +  AV  L + P   L DG  +P  LP
Sbjct: 80  FPLIRRYALAYHVVFIPSQEVDRRGVHVANIEGMRRAVAGLSLRPGYVLSDGFRVP-GLP 138

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  V+ GD+ +  IAAAS++AKV+RDRLM     ++P YGF  H GY T  H   +  
Sbjct: 139 MPSLPVVGGDAAAACIAAASVLAKVSRDRLMVAMEDEHPGYGFAEHKGYSTRAHSAALAR 198

Query: 191 KGPSCIHRLTFRPLRNL 207
            GPS  HR +F  +R L
Sbjct: 199 LGPSSQHRYSFINVRRL 215


>gi|67459453|ref|YP_247077.1| ribonuclease HII [Rickettsia felis URRWXCal2]
 gi|73917830|sp|Q4UKL5|RNH2_RICFE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|67004986|gb|AAY61912.1| Ribonuclease HII [Rickettsia felis URRWXCal2]
          Length = 193

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 88/191 (46%), Positives = 117/191 (61%), Gaps = 5/191 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E        + VAGIDE GRG LAGPVV +A+I+D  NI  GI DSKK+S KKRE L
Sbjct: 6   LHFEKKYHN---YIVAGIDEAGRGPLAGPVVASAVIIDNTNIIPGIKDSKKLSKKKRELL 62

Query: 72  YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           YE+ITS+ + + +  SH  ID+ NI +AT  A   A  NL + P   L+DG    +D   
Sbjct: 63  YEQITSNYVWAAAIISHIEIDEINILEATKKACSIAAANLSLKPEIVLVDGNMPFKD--K 120

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +  ++I GD++SLSIAAASI+AKVTRDRLM     ++P Y +  + GY T +H + I   
Sbjct: 121 RFVSMINGDNLSLSIAAASIVAKVTRDRLMLDLSTEFPQYLWHKNSGYGTKEHIEAINMH 180

Query: 192 GPSCIHRLTFR 202
           G S  HR +F+
Sbjct: 181 GLSPYHRRSFK 191


>gi|283768287|ref|ZP_06341199.1| ribonuclease HII [Bulleidia extructa W1219]
 gi|283104679|gb|EFC06051.1| ribonuclease HII [Bulleidia extructa W1219]
          Length = 200

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 73/196 (37%), Positives = 109/196 (55%), Gaps = 6/196 (3%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E      +   V GIDE GRG LAG + VA +I         I DSK IS KKRE L+
Sbjct: 7   EYEKKAWFSSKRLV-GIDEAGRGPLAGSLFVAGVIFPIGYENEEIYDSKAISEKKREHLF 65

Query: 73  EKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           ++I   AI   I     + ID+ NI++AT +A+    +  +      L D    P +L  
Sbjct: 66  KQIQQDAIWFQIIEVPVEVIDEKNIYQATKEAMLEIAQ--KAPCEVVLTDAM--PLNLDK 121

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   ++KGD  S+SIAAASI+AKV+RD +M    +++P YG   + GYPT +H++ +K  
Sbjct: 122 EVHDLVKGDQKSISIAAASILAKVSRDHVMVELDRQFPGYGLAKNKGYPTKEHREALKAL 181

Query: 192 GPSCIHRLTFRPLRNL 207
           G + IHR ++ P++ +
Sbjct: 182 GITKIHRRSYGPVKKI 197


>gi|295098996|emb|CBK88085.1| RNase HII [Eubacterium cylindroides T2-87]
          Length = 202

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 78/183 (42%), Positives = 106/183 (57%), Gaps = 4/183 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84
           V GIDE GRG +AGP+VVA +  +       I+DSKK++ KKRE L+  IT+ A+   I 
Sbjct: 17  VLGIDEAGRGPIAGPLVVAGVCFEKGFTNEMIDDSKKLTEKKREALFSLITNEALWYQIL 76

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
               + IDK NI++ T +A+     N  V     L D   +P  L  +  +VIKGD  SL
Sbjct: 77  VIEEKIIDKKNIYRTTQEAMLEIAHNAPV--DIVLSDAMPLP-SLDKEWESVIKGDQKSL 133

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           SIAAASI+AKVTRDR M+   + YP YGF  H GYPT  H + +   G    HR ++ P+
Sbjct: 134 SIAAASILAKVTRDRYMKKLDELYPMYGFSKHKGYPTKAHIEALNIYGVLDCHRRSYGPV 193

Query: 205 RNL 207
           + +
Sbjct: 194 QKM 196


>gi|239908101|ref|YP_002954842.1| ribonuclease HII [Desulfovibrio magneticus RS-1]
 gi|239797967|dbj|BAH76956.1| ribonuclease HII [Desulfovibrio magneticus RS-1]
          Length = 210

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 77/189 (40%), Positives = 108/189 (57%), Gaps = 8/189 (4%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DE GRG LAGPV   A+IL       G+ DSKK++  KRE L   I + A+  +
Sbjct: 8   RLVAGVDEAGRGCLAGPVAAGAVILPEIYELPGLTDSKKLTPAKREALAPAIKAQALAWA 67

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-PEDL------PCQAFA 135
           ++      ID+ NI +AT  A+  A+ +L++ P  A IDG  I PE          +   
Sbjct: 68  VAFVWPGEIDRINILQATFAAMAKALAHLRLFPGLACIDGNKIIPEAYLGLLAGRLRQEC 127

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           VI GD+   +I+AASI+AK  RDRL+ +  +++P YGF +H GY  A H   ++  GP  
Sbjct: 128 VIGGDASVPAISAASILAKTARDRLLDLYDRRHPGYGFAAHKGYGVAVHLDALRRLGPCS 187

Query: 196 IHRLTFRPL 204
           IHRLTFR +
Sbjct: 188 IHRLTFRGV 196


>gi|41409068|ref|NP_961904.1| ribonuclease HII [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|81413495|sp|Q73VP3|RNH2_MYCPA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|41397427|gb|AAS05287.1| RnhB [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 239

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 75/198 (37%), Positives = 111/198 (56%), Gaps = 4/198 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE+ +    + PVAG+DEVGRGA AGP+VVAA +L P  +     ++DSKK++   RE L
Sbjct: 20  LESALYRSGLGPVAGVDEVGRGACAGPLVVAACVLGPGKLESLAALDDSKKLTESVRERL 79

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+   +       +D+  +H A ++ +  AV  L + P   L DG  +P  L 
Sbjct: 80  FPVIRRYALAYHVVFIPPAEVDRRGVHVANIEGMRRAVAGLSLRPGYVLSDGFRVP-GLA 138

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD+++  IAAAS++AKV+RDRLM     ++P YGF  H GY T  H   +  
Sbjct: 139 VPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMDAEHPGYGFADHKGYSTPAHSAALAR 198

Query: 191 KGPSCIHRLTFRPLRNLS 208
            GP   HR +F  +R ++
Sbjct: 199 LGPCPQHRHSFINVRRVA 216


>gi|307546380|ref|YP_003898859.1| ribonuclease HII [Halomonas elongata DSM 2581]
 gi|307218404|emb|CBV43674.1| ribonuclease HII [Halomonas elongata DSM 2581]
          Length = 203

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 85/195 (43%), Positives = 116/195 (59%), Gaps = 2/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           EL  +V E     +AG+DEVGRG L GPVV AA+ILDP +   G+ DSKK+S K+RE L 
Sbjct: 5   ELPPLVIEYQGERLAGVDEVGRGPLVGPVVAAAVILDPRDPIDGLTDSKKLSAKRRESLD 64

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I   A+  S++ AS   ID  NI+ AT  A+  A++ L       L+DG  +P     
Sbjct: 65  AEIRERALAWSVAEASADEIDALNIYHATHLAMRRAIDALNPAAEYLLVDGNRLP-GHHV 123

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              AV+KGD+   +IAAASI+AKV RD  M+    ++PDYGF  H GYPT +H   ++  
Sbjct: 124 PGQAVVKGDARHAAIAAASILAKVARDAGMQTLDTRHPDYGFARHKGYPTREHLAALERL 183

Query: 192 GPSCIHRLTFRPLRN 206
           GP   HR +F P++ 
Sbjct: 184 GPLPEHRRSFGPVKR 198


>gi|189502530|ref|YP_001958247.1| hypothetical protein Aasi_1185 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497971|gb|ACE06518.1| hypothetical protein Aasi_1185 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 194

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 78/179 (43%), Positives = 107/179 (59%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DEVGRG LAGPVV AA+IL  N     +NDSKK+S  KR  L   I   AI  +I  
Sbjct: 13  AGCDEVGRGCLAGPVVAAAVILPKNYYHPLLNDSKKLSTAKRILLDSIIKEVAIAWAIGE 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A+H+ ID+ NI  A+  A++ A+  L  +P+  LIDG+            +I GD+   +
Sbjct: 73  ATHEEIDQINIFNASCLAMHRAISQLGQLPQLLLIDGKYFNPYPNIPHQCIIDGDAQFNA 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M     +YPDYG++ +VGYPT  H++ I+E G +  HR +++ L
Sbjct: 133 IAAASILAKTYRDAYMHQLSIQYPDYGWEKNVGYPTVTHRKAIQELGLTPYHRKSYKLL 191


>gi|193211692|ref|YP_001997645.1| ribonuclease HII [Chlorobaculum parvum NCIB 8327]
 gi|238692672|sp|B3QQY0|RNH2_CHLP8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|193085169|gb|ACF10445.1| Ribonuclease H [Chlorobaculum parvum NCIB 8327]
          Length = 205

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 88/201 (43%), Positives = 116/201 (57%), Gaps = 7/201 (3%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKKR 68
           E E  + E N+  V GIDE GRG LAGPVV AA+    +  P G    ++DSKK++ + R
Sbjct: 5   EFETPLWE-NLSRVCGIDEAGRGPLAGPVVAAAVAFPRHFKPTGILEKLDDSKKLTAELR 63

Query: 69  EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           EEL   I  SA   +++    + ID+ NI +AT+ A+  AVE+L   P   L+DG     
Sbjct: 64  EELAPAIRESAEAWAVAVVDAEIIDRINILQATMLAMNQAVESLAATPELLLVDGNRFRP 123

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            LP     ++KGDS   SIAAAS++AK  RD LM     +YP YGFD H GYPTA+H + 
Sbjct: 124 VLPIPYQTIVKGDSKVFSIAAASVLAKTRRDELMVAYAAEYPAYGFDLHFGYPTARHVEA 183

Query: 188 IKEKGPSCIHRLTFRPLRNLS 208
           I   G   IHR +F+ LR L 
Sbjct: 184 IARHGRCAIHRKSFK-LRKLG 203


>gi|319790514|ref|YP_004152147.1| Ribonuclease H [Thermovibrio ammonificans HB-1]
 gi|317115016|gb|ADU97506.1| Ribonuclease H [Thermovibrio ammonificans HB-1]
          Length = 242

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 79/200 (39%), Positives = 115/200 (57%), Gaps = 2/200 (1%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           + ++    +E  +  K    VAG+DE GRG LAGPVV AA++  P+  PF   DSKK++ 
Sbjct: 1   MDDQEIISIEKSLWSKGYRFVAGVDEAGRGPLAGPVVAAAVVFSPHVKPFLFRDSKKLTK 60

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           ++RE L+ +I  SA  + +  A    ID+ NI++ATL A   A+E L + P   + D   
Sbjct: 61  RERERLFREILKSAYAVGVGFADSTEIDELNIYRATLLAAERAIEELPLKPDYLITDYLK 120

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           IP+    +  A+ KGD  S S A AS++AKV RD +M   H  +P+YGF+ H GYPT  H
Sbjct: 121 IPK-FAGRLIAIPKGDERSFSCACASVVAKVVRDFIMEELHTLFPNYGFNKHKGYPTKTH 179

Query: 185 QQVIKEKGPSCIHRLTFRPL 204
              ++  G S +HR +F  L
Sbjct: 180 YGAVRSFGLSPVHRRSFGKL 199


>gi|203287517|ref|YP_002222532.1| ribonuclease H [Borrelia recurrentis A1]
 gi|238690580|sp|B5RQM7|RNH2_BORRA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|201084737|gb|ACH94311.1| ribonuclease H [Borrelia recurrentis A1]
          Length = 181

 Score =  221 bits (565), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 80/181 (44%), Positives = 111/181 (61%), Gaps = 3/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
           + GIDEVGRG + GPV+ AA+I    PN +   ++DSKK++  KRE L   I  +A  + 
Sbjct: 2   ICGIDEVGRGCIFGPVLSAAVIFKTKPNFLNE-LDDSKKLTKTKREYLSSLILENAYYAF 60

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +  S++ IDK NIH A+L A+  A + L +     L+DG+ IP+    Q  A+IKGDS+ 
Sbjct: 61  ADISNEIIDKINIHNASLLAMQIAYQKLNIECNLVLVDGKFIPKIQAKQIRAIIKGDSMI 120

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I AASIIAKV RD+LM    K YP YG   + GYPT +H+  IK+ G   +HR +FR 
Sbjct: 121 DEIKAASIIAKVQRDKLMVEYDKIYPLYGLKKNKGYPTKEHKDAIKKHGILSLHRKSFRL 180

Query: 204 L 204
           +
Sbjct: 181 I 181


>gi|323341686|ref|ZP_08081919.1| ribonuclease HII [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464111|gb|EFY09304.1| ribonuclease HII [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 204

 Score =  221 bits (565), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 75/191 (39%), Positives = 111/191 (58%), Gaps = 5/191 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E    E+    V GIDE GRG +AGP VV+ +I         INDSK++S K+R+EL 
Sbjct: 7   EFEVNYWEQG-KLVVGIDEAGRGPMAGPCVVSGVIFPKGYYDARINDSKQLSEKQRDELV 65

Query: 73  EKITSSAIISISSASH-QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I S+A+ + +       ID+ NI++AT +A+      ++      L D   + +D+  
Sbjct: 66  SNIESNALWTFTEIIPVDIIDRDNIYRATQNAMKKI--AIESKADIVLTDAMPL-DDIAI 122

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              A++KGD+ SLSIAAASI+AK  RD LM++   ++P+YGF  H GY T +H++ I + 
Sbjct: 123 PVEAIVKGDARSLSIAAASILAKTVRDGLMKVYDLEFPEYGFAKHKGYGTKQHKEAILKF 182

Query: 192 GPSCIHRLTFR 202
           G   IHR +FR
Sbjct: 183 GRCPIHRKSFR 193


>gi|260772236|ref|ZP_05881152.1| ribonuclease HII [Vibrio metschnikovii CIP 69.14]
 gi|260611375|gb|EEX36578.1| ribonuclease HII [Vibrio metschnikovii CIP 69.14]
          Length = 170

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 73/167 (43%), Positives = 98/167 (58%), Gaps = 2/167 (1%)

Query: 41  VVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKA 99
           +V AA+ILDP     G+NDSKK+S KKR  L  +I + A+  S+   S   ID+ NI +A
Sbjct: 1   MVTAAVILDPAQPINGLNDSKKLSEKKRLALLPEIQAKALAWSVGRCSPSEIDQLNIFQA 60

Query: 100 TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR 159
           T+ A+  AV  L + P   L+DG  +P+ LP  A AV+KGD     I+AASIIAKV RD+
Sbjct: 61  TMLAMQRAVAGLAIQPDLVLVDGNKVPK-LPMAAEAVVKGDLRVAQISAASIIAKVVRDQ 119

Query: 160 LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
            M      YP +GF  H GYPT  H   I++ G    HR +F P++ 
Sbjct: 120 EMAELDLLYPQFGFAQHKGYPTKAHFAAIEQHGVIDQHRRSFSPVKR 166


>gi|223998909|ref|XP_002289127.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220974335|gb|EED92664.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 183

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 89/185 (48%), Positives = 117/185 (63%), Gaps = 7/185 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK-REELYEKITSSA--IIS 82
           V G+DE GRG LAGPVV AA I+  N    G+ DSKKI+ ++ RE LYE++ SS     +
Sbjct: 1   VVGVDEAGRGPLAGPVVAAAAIVPTN--IEGVIDSKKITKEEDRERLYEELVSSPGIRYA 58

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS--ALIDGRSIPEDLPCQAFAVIKGD 140
           ++  S Q ID+ NI +ATL+ +  AV+ +  +     ALIDG  IP+D+PC + ++ KGD
Sbjct: 59  VAIVSAQRIDEINILQATLEGMRMAVQGVMDMDSYYFALIDGNKIPKDMPCSSESITKGD 118

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
               SI AASIIAKVTRDRLM     KYP+Y    H GYPT  H   +++ G S IHR T
Sbjct: 119 GREYSIGAASIIAKVTRDRLMHEYDAKYPEYNLKQHKGYPTVAHMSAVRKHGASLIHRRT 178

Query: 201 FRPLR 205
           F PL+
Sbjct: 179 FAPLK 183


>gi|157363760|ref|YP_001470527.1| ribonuclease HII [Thermotoga lettingae TMO]
 gi|189043671|sp|A8F5M9|RNH2_THELT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157314364|gb|ABV33463.1| Ribonuclease H [Thermotoga lettingae TMO]
          Length = 224

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 87/193 (45%), Positives = 121/193 (62%), Gaps = 6/193 (3%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77
             ++N   V G+DE GRG LAGPVV AA+IL+   +   + DSK+++ +KREEL+ +I +
Sbjct: 11  FYKQNFGTVIGVDEAGRGCLAGPVVAAAVILE---VQLDVFDSKQLTAQKREELFLQIMN 67

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137
           SA + I  A+ + ID +NI  AT  A+  A+ +L       L+DG+S+  +L  Q   ++
Sbjct: 68  SAEVGIGIATPEEIDLYNIFNATKIAMNRALASLNKKDAYVLVDGKSL--NLSQQGVCIV 125

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGD  S SIAAASI+AKV RDR+M    + YP YGF  H GY T  H   I+E GP+  H
Sbjct: 126 KGDEKSASIAAASIVAKVLRDRIMVAHDRIYPCYGFSKHKGYGTVHHLNAIREFGPTVFH 185

Query: 198 RLTFRPL-RNLSV 209
           RL+F P+  NLSV
Sbjct: 186 RLSFSPVLSNLSV 198


>gi|309775665|ref|ZP_07670664.1| ribonuclease HII [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916571|gb|EFP62312.1| ribonuclease HII [Erysipelotrichaceae bacterium 3_1_53]
          Length = 207

 Score =  221 bits (564), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 73/197 (37%), Positives = 107/197 (54%), Gaps = 4/197 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E    ++    + GIDE GRG +AGP+VVAA+   P      I DSKK+S KKR  L+
Sbjct: 6   EYEQAWWQQGKTCIVGIDEAGRGPIAGPLVVAAVAFPPGYFHEEIYDSKKLSDKKRRALF 65

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           + +   A    I+      ID+ NI++AT +A+    E   +     L D   +P +   
Sbjct: 66  QDVIHQAKEYHIAIIEPAIIDELNIYRATQNAMQTLSEQFSM-ADGVLTDAMPLPGNTK- 123

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              +++KGD  S+SIAAASI+AKVTRD +M    K+YP YGF  H GYPT  H + +   
Sbjct: 124 DVISLVKGDQKSVSIAAASILAKVTRDCIMEAYDKQYPQYGFARHKGYPTKAHIEALHTY 183

Query: 192 GPSC-IHRLTFRPLRNL 207
           G    ++R ++ P+  +
Sbjct: 184 GVVKGLYRESYGPVAAM 200


>gi|84502790|ref|ZP_01000903.1| ribonuclease HII [Oceanicola batsensis HTCC2597]
 gi|84388773|gb|EAQ01643.1| ribonuclease HII [Oceanicola batsensis HTCC2597]
          Length = 188

 Score =  221 bits (564), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 84/179 (46%), Positives = 117/179 (65%)

Query: 29  IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASH 88
           +DEVGRG LAGPV  AA+ILD   IP G+NDSKK++  +R  L E++ + A+IS++ AS 
Sbjct: 1   MDEVGRGPLAGPVTAAAVILDATCIPVGLNDSKKLTEPRRLALLEELRTCAMISVAHASV 60

Query: 89  QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAA 148
           + ID  NI +A+  A+  AV  L V P   LIDG  IP  L   A AVI GD+  LSIAA
Sbjct: 61  EEIDDLNILRASHLAMERAVAGLPVRPAHLLIDGNMIPRGLDIPATAVIGGDARCLSIAA 120

Query: 149 ASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           ASI AK+ RD +MR   +++  YG+D++VGYP+  H   ++  G +  HR +F+P+ N+
Sbjct: 121 ASIAAKIARDTIMRDLAQQFAGYGWDTNVGYPSKSHISALQSIGVTPHHRKSFKPVHNI 179


>gi|229586446|ref|YP_002844947.1| ribonuclease HII [Rickettsia africae ESF-5]
 gi|259494072|sp|C3PMP4|RNH2_RICAE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|228021496|gb|ACP53204.1| Ribonuclease HII [Rickettsia africae ESF-5]
          Length = 193

 Score =  221 bits (564), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 89/178 (50%), Positives = 115/178 (64%), Gaps = 2/178 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
            VAGIDE GRG LAGPVV +A+I+D  NI  GI DSKK+S KKRE LYE+ITS+ + + +
Sbjct: 16  IVAGIDEAGRGPLAGPVVASAVIVDNANIITGIKDSKKLSKKKRELLYEQITSNYVWATA 75

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             SH  ID  NI +AT  A   AV NL + P   L+DG    +D   +  ++I GD++SL
Sbjct: 76  IISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKD--ERFVSIINGDNLSL 133

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           SIAAASI+AKVTRDRLM     ++P Y +  + GY T +H + I   G S  HR +FR
Sbjct: 134 SIAAASIVAKVTRDRLMLDLSAEFPQYLWHKNSGYGTKEHIEAINIYGLSPYHRRSFR 191


>gi|269123118|ref|YP_003305695.1| Ribonuclease H [Streptobacillus moniliformis DSM 12112]
 gi|268314444|gb|ACZ00818.1| Ribonuclease H [Streptobacillus moniliformis DSM 12112]
          Length = 199

 Score =  221 bits (564), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 80/200 (40%), Positives = 116/200 (58%), Gaps = 10/200 (5%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHKKREE 70
           ++ +   + +    + G+DE GRG LAGPVV A + ++  +     +NDSKK++ KKR E
Sbjct: 3   WKFDKSFKRR----IIGVDEAGRGPLAGPVVAACVCINKYSKKLEELNDSKKLTDKKRRE 58

Query: 71  LYEKITSSA--IISISSASHQYIDKHNIHKATLDAIYHAVENL-QVIPRSALIDGRSIPE 127
           L+  +T++    I +     + ID+ NI  AT  A+ +A++N+ +      L+DG    +
Sbjct: 59  LFNYLTTNDDIKIGVGIVDEKVIDEINILNATFLAMNNALDNMEKDEKDLVLVDGNKEIK 118

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
               +  A++KGD  SLSIAAASIIAKVTRD +M      YP Y F  H GY T  H + 
Sbjct: 119 GYLGKQEAIVKGDGKSLSIAAASIIAKVTRDNIMEEYDLIYPGYEFAKHKGYGTKMHYEC 178

Query: 188 IKEKGPSCIHRLTFRPLRNL 207
           IKEKG   IHRL+F  L+NL
Sbjct: 179 IKEKGRCYIHRLSF--LKNL 196


>gi|15892187|ref|NP_359901.1| ribonuclease HII [Rickettsia conorii str. Malish 7]
 gi|20139552|sp|Q92J05|RNH2_RICCN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|15619319|gb|AAL02802.1| ribonuclease HII [Rickettsia conorii str. Malish 7]
          Length = 193

 Score =  221 bits (564), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 89/178 (50%), Positives = 115/178 (64%), Gaps = 2/178 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
            VAGIDE GRG LAGPVV +A+I+D  NI  GI DSKK+S KKRE LYE+ITS+ + + +
Sbjct: 16  IVAGIDEAGRGPLAGPVVASAVIVDNANIITGIKDSKKLSKKKRELLYEQITSNYVWATA 75

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             SH  ID  NI +AT  A   AV NL + P   L+DG    +D   +  ++I GD++SL
Sbjct: 76  IISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKD--ERFVSIINGDNLSL 133

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           SIAAASI+AKVTRDRLM     ++P Y +  + GY T +H + I   G S  HR +FR
Sbjct: 134 SIAAASIVAKVTRDRLMLDLSAEFPQYLWHKNSGYGTKEHIEAINIHGLSPYHRRSFR 191


>gi|118466028|ref|YP_882929.1| ribonuclease HII [Mycobacterium avium 104]
 gi|189043629|sp|A0QJ41|RNH2_MYCA1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|118167315|gb|ABK68212.1| ribonuclease HII [Mycobacterium avium 104]
          Length = 230

 Score =  221 bits (564), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 75/198 (37%), Positives = 111/198 (56%), Gaps = 4/198 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE+ +    + PVAG+DEVGRGA AGP+VVAA +L P  +     ++DSKK++   RE L
Sbjct: 11  LESALYRSGLGPVAGVDEVGRGACAGPLVVAACVLGPGKLESLAALDDSKKLTESVRERL 70

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+   +       +D+  +H A ++ +  AV  L + P   L DG  +P  L 
Sbjct: 71  FPVIRRYALAYHVVFIPPAEVDRRGVHVANIEGMRRAVAGLSLRPGYVLSDGFRVP-GLA 129

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD+++  IAAAS++AKV+RDRLM     ++P YGF  H GY T  H   +  
Sbjct: 130 VPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMDAEHPGYGFADHKGYSTPAHSAALAR 189

Query: 191 KGPSCIHRLTFRPLRNLS 208
            GP   HR +F  +R ++
Sbjct: 190 LGPCPQHRHSFINVRRVA 207


>gi|34580789|ref|ZP_00142269.1| ribonuclease HII [Rickettsia sibirica 246]
 gi|28262174|gb|EAA25678.1| ribonuclease HII [Rickettsia sibirica 246]
          Length = 193

 Score =  221 bits (564), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 89/178 (50%), Positives = 115/178 (64%), Gaps = 2/178 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
            VAGIDE GRG LAGPVV +A+I+D  NI  GI DSKK+S KKRE LYE+ITS+ + + +
Sbjct: 16  IVAGIDEAGRGPLAGPVVASAVIVDNANIITGIKDSKKLSKKKRELLYEQITSNYVWATA 75

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             SH  ID  NI +AT  A   AV NL + P   L+DG    +D   +  ++I GD++SL
Sbjct: 76  IISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKD--ERFVSIINGDNLSL 133

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           SIAAASI+AKVTRDRLM     ++P Y +  + GY T +H + I   G S  HR +FR
Sbjct: 134 SIAAASIVAKVTRDRLMLDLSAEFPQYLWHKNSGYGTKEHIEAINIHGLSPYHRRSFR 191


>gi|148292195|dbj|BAF62910.1| putative ribonuclease H [uncultured bacterium]
          Length = 229

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 76/218 (34%), Positives = 115/218 (52%), Gaps = 17/218 (7%)

Query: 2   FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAA-IILD--PNNIPFGIN 58
           F ++  + P + LE+         V G+DE GRG  AGPV  AA  I     +++P  + 
Sbjct: 9   FNDTASDLPDYTLESA--ASGNGAVIGVDEAGRGPWAGPVTAAAFWIYPAAKDSLPASLT 66

Query: 59  DSKKISHKKREELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYHAVENL---- 111
           DSKK+S  KR+++ + + +     + ++  +S   ID   I  AT  A+  AV  L    
Sbjct: 67  DSKKLSASKRQQIEQALCAPHSQHLWAVKHSSVNQIDTCGILPATFAAMAEAVAELAKTL 126

Query: 112 ----QVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                +     L+DG  +P  L     AV++GDS SLSIAAASI+AK +RD +M      
Sbjct: 127 QKRHNLPVAMVLVDGNLLPP-LDFPCQAVVRGDSRSLSIAAASILAKQSRDEVMTELASH 185

Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           YPDYG+ ++ GY T  HQQ ++  G +  HR +F P++
Sbjct: 186 YPDYGWQTNAGYGTKAHQQALQRCGITPHHRKSFAPIK 223


>gi|258511350|ref|YP_003184784.1| Ribonuclease H [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478076|gb|ACV58395.1| Ribonuclease H [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 216

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 76/200 (38%), Positives = 114/200 (57%), Gaps = 8/200 (4%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHK 66
            + L+  +        AG+DEVGRG +AGPVV A+++L      +     + DSK++   
Sbjct: 7   RYRLDLAL--SGGCRTAGVDEVGRGCIAGPVVAASVVLPLERETYEELKDVMDSKQLKPD 64

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
            RE L ++I + A+ + I  AS + ID+ NI +AT  A+  +++ L +    AL+DG   
Sbjct: 65  VRERLADRIRAKALAVGIGMASPEEIDRLNILQATQLAMKRSLDALDIPVDLALVDGNRG 124

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
                     V+ GD+ SL +AAAS+IAKV RDRLM    + +P YGF  HVGY T  H 
Sbjct: 125 FRHR-VPVLPVVDGDARSLLVAAASVIAKVFRDRLMAKLDEGFPGYGFSEHVGYGTRAHL 183

Query: 186 QVIKEKGPSCIHRLTFRPLR 205
           + ++  GPS +HRL+F P+R
Sbjct: 184 EALRRLGPSVVHRLSFAPVR 203


>gi|254776202|ref|ZP_05217718.1| ribonuclease HII [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 239

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 75/198 (37%), Positives = 111/198 (56%), Gaps = 4/198 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE+ +    + PVAG+DEVGRGA AGP+VVAA +L P  +     ++DSKK++   RE L
Sbjct: 20  LESALYRSGLGPVAGVDEVGRGACAGPLVVAACVLGPAKLESLAALDDSKKLTESVRERL 79

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+   +       +D+  +H A ++ +  AV  L + P   L DG  +P  L 
Sbjct: 80  FPVIRRYALAYHVVFIPPAEVDRRGVHVANIEGMRRAVAGLSLRPGYVLSDGFRVP-GLA 138

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD+++  IAAAS++AKV+RDRLM     ++P YGF  H GY T  H   +  
Sbjct: 139 VPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMDAEHPGYGFADHKGYSTPAHSAALAR 198

Query: 191 KGPSCIHRLTFRPLRNLS 208
            GP   HR +F  +R ++
Sbjct: 199 LGPCPQHRHSFINVRRVA 216


>gi|307244425|ref|ZP_07526536.1| ribonuclease HII [Peptostreptococcus stomatis DSM 17678]
 gi|306492244|gb|EFM64286.1| ribonuclease HII [Peptostreptococcus stomatis DSM 17678]
          Length = 263

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 93/195 (47%), Positives = 122/195 (62%), Gaps = 4/195 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E    +     VAG+DEVGRG LAGPVV A ++L PN    GINDSKK+S +KR+ LY+
Sbjct: 72  YENECYKNGAIFVAGLDEVGRGPLAGPVVAAVVVLKPNARIEGINDSKKLSEEKRDALYD 131

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
            I + AI   I  A +  ID+HNI  AT  A+  A+E L+V     L D   IP  +   
Sbjct: 132 IIINEAIDYGIGMADNFEIDEHNILNATYIAMRRALEKLEVEVDCLLNDAVRIP-GVDIP 190

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              +IKGD+ S+SIAAASI+AKVTRDR+M    K+YP YGF S+ GY T+ H Q +++ G
Sbjct: 191 QMPIIKGDAKSISIAAASIVAKVTRDRMMVDYDKEYPGYGFASNKGYGTSDHYQGLEKFG 250

Query: 193 PSCIHRLTFRPLRNL 207
            + IHR +F  L+NL
Sbjct: 251 RTKIHRNSF--LKNL 263


>gi|187917927|ref|YP_001883490.1| ribonuclease HII [Borrelia hermsii DAH]
 gi|238689305|sp|B2S1N3|RNH2_BORHD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|119860775|gb|AAX16570.1| ribonuclease HII [Borrelia hermsii DAH]
          Length = 181

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 79/179 (44%), Positives = 112/179 (62%), Gaps = 3/179 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
           + GIDEVGRG + GPV+ AA+I    PN +   ++DSKK+   KRE L   I  ++  + 
Sbjct: 2   ICGIDEVGRGCIFGPVLSAAVIFKGNPNFLNE-LDDSKKLKKAKREYLSSLILENSYYAF 60

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +  S++ IDK NIH A+L A+  A E L +     L+DG+ IP+    +  A+IKGDSI 
Sbjct: 61  AEVSNETIDKINIHHASLLAMQIAYEKLDINCDLVLVDGKFIPKIKAKKIQAIIKGDSII 120

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             I AASIIAKV RD+LM   +K YP Y  + + GYPT +H++ IK+ G S +HR +F+
Sbjct: 121 NEIKAASIIAKVQRDKLMDEYNKIYPLYALNKNKGYPTKEHKEAIKKHGISNLHRRSFK 179


>gi|145224747|ref|YP_001135425.1| ribonuclease HII [Mycobacterium gilvum PYR-GCK]
 gi|315445077|ref|YP_004077956.1| RNase HII [Mycobacterium sp. Spyr1]
 gi|189043630|sp|A4TE84|RNH2_MYCGI RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|145217233|gb|ABP46637.1| RNase HII [Mycobacterium gilvum PYR-GCK]
 gi|315263380|gb|ADU00122.1| RNase HII [Mycobacterium sp. Spyr1]
          Length = 253

 Score =  220 bits (562), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 81/199 (40%), Positives = 116/199 (58%), Gaps = 4/199 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREEL 71
           LE+ +    + PVAG+DEVGRGA AGP+VVAA IL PN +     ++DSKK++  +RE L
Sbjct: 20  LESALYRAGLGPVAGVDEVGRGACAGPLVVAACILGPNRLESLSALDDSKKLNESERERL 79

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+   +       +D+  +H A ++ +  AV  L V P   L DG  +P  LP
Sbjct: 80  FPLIRRYAVAFHVVFIPSVEVDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVP-GLP 138

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  V+ GD+ +  IAAAS++AKV+RDRLM    +++P YGF  H GY T  H   + +
Sbjct: 139 MPSLPVVGGDAAAACIAAASVLAKVSRDRLMVAMDQEHPGYGFADHKGYSTRAHSAALND 198

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            GPS  HR +F  +R L V
Sbjct: 199 LGPSTQHRFSFINVRRLVV 217


>gi|83754963|pdb|2ETJ|A Chain A, Crystal Structure Of Ribonuclease Hii (Ec 3.1.26.4) (Rnase
           Hii) (Tm0915) From Thermotoga Maritima At 1.74 A
           Resolution
          Length = 250

 Score =  220 bits (562), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 81/198 (40%), Positives = 106/198 (53%), Gaps = 18/198 (9%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGP-------VVVAAIILDPNNIPFGINDSKKISHKKRE 69
            + +K    VAG+DE GRG LAGP       +              GINDSK++S  KRE
Sbjct: 17  ELYKKEFGIVAGVDEAGRGCLAGPVVAAAVVL---------EKEIEGINDSKQLSPAKRE 67

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L ++I   A + I  AS + ID +NI  AT  A   A+ENL V P   L+DG+ I  +L
Sbjct: 68  RLLDEIXEKAAVGIGIASPEEIDLYNIFNATKLAXNRALENLSVKPSFVLVDGKGI--EL 125

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                 ++KGD  S  I AASI+AKV RDRL    H+ YP + F  H GY T +H   I+
Sbjct: 126 SVPGTCLVKGDQKSKLIGAASIVAKVFRDRLXSEFHRXYPQFSFHKHKGYATKEHLNEIR 185

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + G   IHRL+F P+  L
Sbjct: 186 KNGVLPIHRLSFEPVLEL 203


>gi|227833393|ref|YP_002835100.1| Ribonuclease HII [Corynebacterium aurimucosum ATCC 700975]
 gi|262184381|ref|ZP_06043802.1| ribonuclease HII [Corynebacterium aurimucosum ATCC 700975]
 gi|227454409|gb|ACP33162.1| Ribonuclease HII [Corynebacterium aurimucosum ATCC 700975]
          Length = 213

 Score =  220 bits (562), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 75/194 (38%), Positives = 107/194 (55%), Gaps = 4/194 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
            E  + +  + PVAG+DE GRGA  GPV +AA IL    +P    ++DSKK++   RE+L
Sbjct: 10  YEVALSKAGLGPVAGVDEAGRGACCGPVTIAACILPDRILPGLEWLDDSKKLTPAAREKL 69

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
              I   A+  S+     + ID   I  A L  +  AV  L + P   L D   +P  LP
Sbjct: 70  EPVIKRRALAWSVVHIGAKGIDAFGIQHANLSGMRRAVAQLGIRPGYVLSDALFVP-GLP 128

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +I GD+ +  IAAAS++AKV+RDRLM    K+YP Y  ++H GY TA HQ+ I  
Sbjct: 129 APQLPIIGGDTAARCIAAASVLAKVSRDRLMADVAKQYPGYALETHKGYGTAVHQEAIAR 188

Query: 191 KGPSCIHRLTFRPL 204
            G +  HR+++R +
Sbjct: 189 LGATPEHRMSYRNV 202


>gi|94985723|ref|YP_605087.1| ribonuclease H [Deinococcus geothermalis DSM 11300]
 gi|94556004|gb|ABF45918.1| Ribonuclease H [Deinococcus geothermalis DSM 11300]
          Length = 224

 Score =  220 bits (562), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 71/199 (35%), Positives = 107/199 (53%), Gaps = 3/199 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P +  E     +  + VAG+DE GRGA AGPV VAA+IL      +   DSK+++  +RE
Sbjct: 23  PDWAFEREHWRRGYFRVAGVDEAGRGAWAGPVTVAAVILPGLATEYPFRDSKQLTPAQRE 82

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            L  ++   A+  ++  A  + I++ NI  AT  A   A+  L   P++ + D   +   
Sbjct: 83  ALAAQVRQVAVAWAVEHAWPEEIERLNILGATHAAAARALARLDPPPQALVTDYLRLRTA 142

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LP    A  K D++S S+AAAS++AK  RDRLM     +YP YGF +H GY    H+  +
Sbjct: 143 LPL--LAPPKADALSYSVAAASLLAKTERDRLMAELDARYPGYGFAAHKGYGAPAHRAAL 200

Query: 189 KEKGPSCIHRLTFRPLRNL 207
           +  G S +HR  + P+  L
Sbjct: 201 ERLGVSELHRRGYAPIARL 219


>gi|15806947|ref|NP_295672.1| ribonuclease HII [Deinococcus radiodurans R1]
 gi|6459735|gb|AAF11501.1|AE002033_9 ribonuclease HII [Deinococcus radiodurans R1]
          Length = 212

 Score =  220 bits (562), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 72/199 (36%), Positives = 112/199 (56%), Gaps = 3/199 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P +  E     +  + VAG+DE GRGA AGP+ VAA+IL   +  +   DSK++S   RE
Sbjct: 8   PDWAYEREHWRRGHFRVAGVDEAGRGAWAGPLTVAAVILPGTSQEYPFRDSKQLSPAARE 67

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           E   ++   A+  ++  A  + ID+ N+  AT  A   A+  L+  P++ + D   +  D
Sbjct: 68  EYAAEVRRVAVAWAVEHAWPEEIDRLNVLGATHAAALRAIARLEPPPQALVTDYLRLRAD 127

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LP    A  + D++S S+AAAS++AK  RDRLMR    ++P YGF +H GY    H+  +
Sbjct: 128 LPLS--APPRADALSYSVAAASLLAKTERDRLMRELDAEFPGYGFAAHKGYGAPAHRAAL 185

Query: 189 KEKGPSCIHRLTFRPLRNL 207
           +E G +  HR ++ P+R L
Sbjct: 186 RELGVTEQHRRSYAPIRAL 204


>gi|203283974|ref|YP_002221714.1| ribonuclease H [Borrelia duttonii Ly]
 gi|238690551|sp|B5RKU7|RNH2_BORDL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|201083417|gb|ACH93008.1| ribonuclease H [Borrelia duttonii Ly]
          Length = 181

 Score =  220 bits (562), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 79/181 (43%), Positives = 111/181 (61%), Gaps = 3/181 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
           + GIDEVGRG + GPV+ AA+I    PN +   ++DSKK++  KRE L   I  +A  + 
Sbjct: 2   ICGIDEVGRGCIFGPVLSAAVIFKSKPNFLNE-LDDSKKLTKTKREYLSALILENAYYAF 60

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
           +  S++ IDK NIH A+L A+  A + L +     L+DG+ IP+    Q  A+IKGDS+ 
Sbjct: 61  ADISNEIIDKINIHNASLLAMQIAYQKLNIECNLVLVDGKFIPKIQAKQIRAIIKGDSMI 120

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I AASIIAKV RD+LM    K YP YG   + GYPT +H+  IK+ G   +HR +F+ 
Sbjct: 121 DEIKAASIIAKVQRDKLMVEYDKIYPLYGLKKNKGYPTKEHKDAIKKHGILSLHRKSFQL 180

Query: 204 L 204
           +
Sbjct: 181 I 181


>gi|237785759|ref|YP_002906464.1| Ribonuclease HII [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758671|gb|ACR17921.1| Ribonuclease HII [Corynebacterium kroppenstedtii DSM 44385]
          Length = 261

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 73/202 (36%), Positives = 107/202 (52%), Gaps = 6/202 (2%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKI 63
           +P+   +  E  + +  + PVAG+DE GRGA  GP+ +AA IL   P +    + DSKK+
Sbjct: 50  MPQARTY--EDALVKAGLGPVAGVDEAGRGACCGPMAIAACILPAKPIHPLDKLTDSKKL 107

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           S   RE+L+  I  SA   S+       IDK+ +    +  +  AV  L   P   L D 
Sbjct: 108 SPTMREKLFPIIKDSAESWSVILIPAADIDKYGVQAMNIAGMRRAVGVLDQRPHYVLTDA 167

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
             + + L      +I GDS +  IAAAS++AKVTRDR M    ++YP YG + H GY TA
Sbjct: 168 MRV-DGLTQPHLPIIGGDSAARCIAAASVLAKVTRDRYMCDLAERYPGYGLEKHKGYGTA 226

Query: 183 KHQQVIKEKGPSCIHRLTFRPL 204
           +H   ++  G +  HR T+R +
Sbjct: 227 QHIDAVRLHGGTPEHRYTYRNV 248


>gi|269469003|gb|EEZ80571.1| Ribonuclease HII [uncultured SUP05 cluster bacterium]
          Length = 171

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 98/170 (57%), Gaps = 3/170 (1%)

Query: 39  GPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHK 98
           G V+  A+IL  +     + DSKK+S KKRE LY  IT     ++  A+ Q +D+ NI +
Sbjct: 2   GSVIAGAVILPNDFNLPELTDSKKLSEKKREILYTLITQQCQWAVGEANTQEVDEINILQ 61

Query: 99  ATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD 158
           AT+ A+  AVENL       L+DG   P+   C   A+IKGD     I+AASIIAKVTRD
Sbjct: 62  ATMLAMRRAVENLNSQYDQVLVDGNRCPKLKNC--TAIIKGDLTEPVISAASIIAKVTRD 119

Query: 159 RLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC-IHRLTFRPLRNL 207
           R M +   +YP+YGF  H GY T  H Q +++ G     HR +F P+R L
Sbjct: 120 RQMILLDAQYPEYGFAQHKGYGTRVHLQALEKFGAIKGQHRYSFAPVRKL 169


>gi|308190329|ref|YP_003923260.1| ribonuclease H [Mycoplasma fermentans JER]
 gi|319777726|ref|YP_004137377.1| ribonuclease [Mycoplasma fermentans M64]
 gi|307625071|gb|ADN69376.1| ribonuclease H [Mycoplasma fermentans JER]
 gi|318038801|gb|ADV35000.1| Ribonuclease [Mycoplasma fermentans M64]
          Length = 198

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 63/183 (34%), Positives = 103/183 (56%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
            + G+DE GRG  AGP+VV  +I+  N     I DSK++S K+REE  E I  +AI +++
Sbjct: 14  LIVGLDEAGRGCCAGPLVVGCVIMPQNFNHPLIKDSKQLSQKQREEALEIILENAIETVT 73

Query: 85  -SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
              + Q +D+ N  +A+   +   +  L   P   + D   I  D+      ++KGD +S
Sbjct: 74  TIINAQEVDQLNPKQASRIGMQRCINKLNTKPELVITDFEKI-NDINIPQINLVKGDQLS 132

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           +++AAASI+AKVTRD +M    KK+P Y F  + GY T +H+  + + G    HR +++ 
Sbjct: 133 INVAAASILAKVTRDLIMVGIDKKFPMYNFKKNKGYCTKEHEAAMSQYGICEFHRKSYKN 192

Query: 204 LRN 206
           ++ 
Sbjct: 193 VKK 195


>gi|238810213|dbj|BAH70003.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 217

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 63/183 (34%), Positives = 103/183 (56%), Gaps = 2/183 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
            + G+DE GRG  AGP+VV  +I+  N     I DSK++S K+REE  E I  +AI +++
Sbjct: 33  LIVGLDEAGRGCCAGPLVVGCVIMPQNFNHPLIKDSKQLSQKQREEALEIILENAIETVT 92

Query: 85  -SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
              + Q +D+ N  +A+   +   +  L   P   + D   I  D+      ++KGD +S
Sbjct: 93  TIINAQEVDQLNPKQASRIGMQRCINKLNTKPELVITDFEKI-NDINIPQINLVKGDQLS 151

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           +++AAASI+AKVTRD +M    KK+P Y F  + GY T +H+  + + G    HR +++ 
Sbjct: 152 INVAAASILAKVTRDLIMVGIDKKFPMYNFKKNKGYCTKEHEAAMSQYGICEFHRKSYKN 211

Query: 204 LRN 206
           ++ 
Sbjct: 212 VKK 214


>gi|297562257|ref|YP_003681231.1| ribonuclease H [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296846705|gb|ADH68725.1| Ribonuclease H [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 232

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 70/197 (35%), Positives = 112/197 (56%), Gaps = 1/197 (0%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +ELE  +R      VAG+DEVGRGA AGP++V A +      P G+ DSK+++ K+R E+
Sbjct: 16  YELEDELRSSGARVVAGVDEVGRGAWAGPLLVCAAVPGEGAPPPGLTDSKRLTPKRRREI 75

Query: 72  YEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            +++    A  +   +S + ID+  + +A   A   A++ L   P + ++DGR      P
Sbjct: 76  ADQLRPWVADHAFGWSSPEEIDEVGMTEALHRASRRALDALSPRPDAVILDGRHDFIGRP 135

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            +    +KGD   +S+AAA+I+AKV RD LM      +P YGF+   GYP+  H+  + E
Sbjct: 136 WRVRTCVKGDLACVSVAAAAILAKVRRDALMAELAADHPGYGFERAAGYPSPVHRAALAE 195

Query: 191 KGPSCIHRLTFRPLRNL 207
            GP+  HR+++  L +L
Sbjct: 196 SGPTPHHRMSWSYLDDL 212


>gi|169824229|ref|YP_001691840.1| ribonuclease HII [Finegoldia magna ATCC 29328]
 gi|167831034|dbj|BAG07950.1| ribonuclease HII [Finegoldia magna ATCC 29328]
          Length = 207

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 81/203 (39%), Positives = 112/203 (55%), Gaps = 19/203 (9%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREEL 71
           E E  +       + GIDEVGRG LAGPVV  AII+  N  I  G+ DSKK+S KKR + 
Sbjct: 8   EFEEEL-------ICGIDEVGRGPLAGPVVTCAIIMPKNCEIIEGVTDSKKLSEKKRIKF 60

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALIDGRS 124
            + I + A+  S++      ID+ NI +AT  ++  AVE+L+      + P   +ID   
Sbjct: 61  KDMILNQALAYSVNFVDQGVIDEINIKQATRLSMKRAVESLKTKDNKFIKPDLIVIDAEE 120

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           I  D+  +  + +KGD     I+ ASI+AKV RD  M+     YP YGF+ H GY T  H
Sbjct: 121 IDTDI--KQMSFVKGDEKLYPISCASIVAKVIRDEYMKEMAVIYPQYGFEKHKGYGTKLH 178

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
           +++I E G   +HR TF  LR L
Sbjct: 179 REMILEHGECPLHRKTF--LRKL 199


>gi|319784761|ref|YP_004144237.1| ribonuclease H [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317170649|gb|ADV14187.1| Ribonuclease H [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 233

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 99/200 (49%), Positives = 137/200 (68%), Gaps = 2/200 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E+P F  E     + +WPVAG+DE GRG LAGPVV AA++LDP NIP G++DSK++SH +
Sbjct: 16  EKPDFSFETKAMAEGLWPVAGMDEAGRGPLAGPVVAAAVVLDPANIPDGLDDSKRLSHLQ 75

Query: 68  REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           RE L+ +I  SA  +S++S S + ID  NI KA+L+A+  A+  L + P+ AL DGR +P
Sbjct: 76  REALFLRILGSAQAVSMASISAEGIDGSNILKASLEAMRRALVGLSIRPKLALADGRDVP 135

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LPC+  A+IKGD  S SIAAASI+AKV RDR+M      +  YGF+ H+GY T +H+ 
Sbjct: 136 PGLPCEGRALIKGDQRSQSIAAASIVAKVMRDRMMCGCGNHHDRYGFEVHMGYATVRHRT 195

Query: 187 VIKEKGP-SCIHRLTFRPLR 205
            I+  GP + +HR++F P R
Sbjct: 196 AIEAHGPVARLHRVSFAPFR 215


>gi|198283300|ref|YP_002219621.1| Ribonuclease H [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665608|ref|YP_002425888.1| ribonuclease HII [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247821|gb|ACH83414.1| Ribonuclease H [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517821|gb|ACK78407.1| ribonuclease HII [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 196

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 73/179 (40%), Positives = 105/179 (58%), Gaps = 5/179 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG+DE GRG LAGPVV AA+IL       G++DSKK++   R     +I + A+  S++ 
Sbjct: 15  AGVDEAGRGPLAGPVVAAAVIL--RVPLHGLDDSKKMTAAARTHWAARIRNEALAWSVAR 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A+   I+++NI +A+L A+  A+  L   PR  L+DG   P     Q   ++ GD    +
Sbjct: 73  AAVWEIERYNILQASLRAMARAIVGLPRQPRRILVDGNQSPPGW--QVETLVGGDGRVDA 130

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAA I+AKVTRD  M++  + YP YG   H+GY TA H Q ++  GP  +HR  F P+
Sbjct: 131 IAAAGILAKVTRDEEMQLLDRYYPQYGLARHMGYGTAVHLQALRRWGPCALHRRGFGPV 189


>gi|157828142|ref|YP_001494384.1| ribonuclease HII [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165932842|ref|YP_001649631.1| ribonuclease HII [Rickettsia rickettsii str. Iowa]
 gi|166226649|sp|A8GR51|RNH2_RICRS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|189043649|sp|B0BWJ9|RNH2_RICRO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157800623|gb|ABV75876.1| ribonuclease HII [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165907929|gb|ABY72225.1| ribonuclease HII [Rickettsia rickettsii str. Iowa]
          Length = 193

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 90/178 (50%), Positives = 114/178 (64%), Gaps = 2/178 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
            VAGIDE GRG LAGPVV +A+I+D  NI  GI DSKK+S KKRE LYE+ITS+   + +
Sbjct: 16  IVAGIDEAGRGPLAGPVVASAVIVDNANIITGIKDSKKLSKKKRELLYEQITSNYAWATA 75

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             SH  ID  NI +AT  A   AV NL + P   L+DG    +D   +  ++I GD++SL
Sbjct: 76  IISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKD--ERFVSIINGDNLSL 133

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           SIAAASIIAKVTRDRLM     ++P Y +  + GY T +H + I   G S  HR +FR
Sbjct: 134 SIAAASIIAKVTRDRLMLDLSAEFPQYLWHKNSGYGTKEHIEAINIHGLSPYHRRSFR 191


>gi|313836667|gb|EFS74381.1| ribonuclease HII [Propionibacterium acnes HL037PA2]
 gi|314928174|gb|EFS92005.1| ribonuclease HII [Propionibacterium acnes HL044PA1]
 gi|314972173|gb|EFT16270.1| ribonuclease HII [Propionibacterium acnes HL037PA3]
          Length = 204

 Score =  219 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 74/195 (37%), Positives = 109/195 (55%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELY 72
           E  +    + PVAG DE GRGA AGP+V AA+ILD        G+ DSK +S  KRE L+
Sbjct: 4   ERALTRAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRITGLADSKTLSAAKREALF 63

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           + I + A+ +S         D+  + +A +  +  AV  L + P   L DG  + + L  
Sbjct: 64  DVIINKALAVSWVRVEADECDRLGMQEADISGLRRAVARLGIEPGYVLSDGFPV-DGLTV 122

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               + KGDS+   +AAASI+AKV RDR+M    ++ P Y F  H GY TA H++ ++E 
Sbjct: 123 PDLGMWKGDSVCACVAAASIVAKVVRDRIMIAMDREVPGYDFAVHKGYATALHRRRLEEL 182

Query: 192 GPSCIHRLTFRPLRN 206
           GPSC HR+++  ++ 
Sbjct: 183 GPSCQHRMSYANVQR 197


>gi|226356414|ref|YP_002786154.1| ribonuclease HII [Deinococcus deserti VCD115]
 gi|226318404|gb|ACO46400.1| putative Ribonuclease H (RNase HII) [Deinococcus deserti VCD115]
          Length = 218

 Score =  219 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 69/199 (34%), Positives = 107/199 (53%), Gaps = 3/199 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P +  E     +  + VAG+DE GRGA AGPV VAA+IL      +   DSK++S  +RE
Sbjct: 8   PDWAYEREHWRRGYFRVAGVDEAGRGAWAGPVTVAAVILPGLAQEYPFRDSKQLSASQRE 67

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
              +++   A+  ++  A  + I++ NI  AT  A   A+  L   P++ + D   +   
Sbjct: 68  ACAQEVRRVALSYAVEHAWPEEIERLNILGATHAAAARALARLDPAPQALITDYLKLRTS 127

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LP    A  + D++S ++AAAS++AK  RD LM     ++P YGF  H GY    H+  +
Sbjct: 128 LPLS--APPRADALSYTVAAASLLAKTERDHLMLELDLQHPGYGFAGHKGYGAPAHRAAL 185

Query: 189 KEKGPSCIHRLTFRPLRNL 207
            E G S +HR ++ P+R L
Sbjct: 186 AELGVSPVHRRSYAPIRAL 204


>gi|149926572|ref|ZP_01914833.1| Ribonuclease H [Limnobacter sp. MED105]
 gi|149824935|gb|EDM84149.1| Ribonuclease H [Limnobacter sp. MED105]
          Length = 218

 Score =  219 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 76/198 (38%), Positives = 116/198 (58%), Gaps = 8/198 (4%)

Query: 16  AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
               E++   V G+DE GRG L GPVV  A +L+  N   G+  SK +S KKR+ L   I
Sbjct: 11  QAYAEQHSLQVIGVDEAGRGPLCGPVVAGAALLNQPNTIDGLACSKTLSAKKRDSLETAI 70

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVE------NLQVIPRSALIDGRSIPED 128
             +A   +++ A+ + ID+ NI +A+L A++ AV+       L+       +DG  +P+ 
Sbjct: 71  RRNAKACAVAHATVEEIDRLNILQASLLAMWRAVDLVLDQTGLKPKQCLIAVDGNKLPK- 129

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
            P QA AV+KGD+   +I+AASI+AKV RD   +    ++P Y  D H+GYPTA+H  ++
Sbjct: 130 WPYQAIAVVKGDTKIPAISAASILAKVARDEWCKTHALQFPQYELDIHMGYPTARHMALL 189

Query: 189 KEKGPSCIHRLTFRPLRN 206
            E G + +HR +FRP+R 
Sbjct: 190 LEHGATQLHRKSFRPVRE 207


>gi|254513857|ref|ZP_05125918.1| ribonuclease HII [gamma proteobacterium NOR5-3]
 gi|219676100|gb|EED32465.1| ribonuclease HII [gamma proteobacterium NOR5-3]
          Length = 204

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 86/201 (42%), Positives = 126/201 (62%), Gaps = 3/201 (1%)

Query: 9   RPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
            P  + EA + +      + G+DEVGRG LAG VV AA++L+  +   G+ DSKK++ ++
Sbjct: 1   MPLSDWEAALGDLPEEACIVGVDEVGRGPLAGDVVAAAVVLNSADPIDGLADSKKLTARR 60

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           RE L E++   A  +++  A+ + ID  NI +A+L A++ AV+ L + P   L+DGR +P
Sbjct: 61  REALSEQLHLRAHGVALGLATPEEIDDLNILQASLLAMWRAVDALGMTPDLVLVDGRQLP 120

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
                 + AVIKGDS    IAAASI+AKV RDR M   H ++P YGFD+H GYPTA H  
Sbjct: 121 R-WNHPSIAVIKGDSRVPQIAAASIVAKVARDRYMCEQHLRWPMYGFDAHKGYPTAAHLA 179

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            ++E G S +HR +F P+R +
Sbjct: 180 ALREHGVSPLHRRSFAPVRAV 200


>gi|291320659|ref|YP_003515924.1| ribonuclease H II [Mycoplasma agalactiae]
 gi|290752995|emb|CBH40971.1| Ribonuclease H II [Mycoplasma agalactiae]
          Length = 207

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 72/185 (38%), Positives = 112/185 (60%), Gaps = 2/185 (1%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81
              +AG+DE GRG  AGP+VVA++I+  N     INDSKK+S K+R+ L+++I +  I  
Sbjct: 12  YKLIAGVDEAGRGCCAGPLVVASVIMPKNYNNERINDSKKLSAKQRDILFDEILNVCIDY 71

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
            I +    Y+DK+N  K++ + +   +++L   P   + D   I E L  +   ++KGDS
Sbjct: 72  HIVTLPSSYVDKYNPKKSSKNGMKICIDSLNTKPDLVITDFEKIDE-LAIKQVNLVKGDS 130

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           IS ++A ASI+AKVTRDR M     KY +Y F+ H GY T +H + I + G +  HRLT+
Sbjct: 131 ISFNVACASILAKVTRDRFMIKIANKYKEYEFEKHKGYCTKRHTESIIQYGATPEHRLTY 190

Query: 202 RPLRN 206
           + ++ 
Sbjct: 191 KNVKK 195


>gi|313901245|ref|ZP_07834733.1| ribonuclease HII [Clostridium sp. HGF2]
 gi|312954203|gb|EFR35883.1| ribonuclease HII [Clostridium sp. HGF2]
          Length = 207

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 71/197 (36%), Positives = 111/197 (56%), Gaps = 4/197 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E +  ++    + GIDE GRG +AGP+VVAA+   P      I DSKK+S KKR  L+
Sbjct: 6   EYEQVWWQQGKRCIVGIDEAGRGPIAGPLVVAAVAFPPGYSHPEIYDSKKLSDKKRRALF 65

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            ++ + A+   I     + ID+ NI++AT  A+   + ++       L D   +P +   
Sbjct: 66  HEVVAQALEYHIRIIEPKIIDELNIYRATQRAMQD-ISDMFAHADGVLTDAMPLPHN-ER 123

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              +++KGD  S+SIAAASI+AKVTRD +M    ++YP YGF  H GYPT  H + +   
Sbjct: 124 DVISLVKGDQKSVSIAAASILAKVTRDCMMEAYDRQYPQYGFARHKGYPTKAHIEALHTY 183

Query: 192 GP-SCIHRLTFRPLRNL 207
           G  + ++R ++ P+  +
Sbjct: 184 GVITGLYRESYGPVAAM 200


>gi|291543926|emb|CBL17035.1| RNase HII [Ruminococcus sp. 18P13]
          Length = 205

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 82/198 (41%), Positives = 121/198 (61%), Gaps = 5/198 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           FE +  VR        G+DE GRG LAG V  AA++L P+ +  G++DSKK++ K+RE L
Sbjct: 12  FEYDEAVRNS-YPVFCGVDEAGRGPLAGDVYAAAVVLPPDVVIPGLDDSKKLTEKRREAL 70

Query: 72  YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y++I + A    I++A+ + I++ NI +A + A+  AV  L +  +  LIDG  +P  + 
Sbjct: 71  YDEIIAKASACCIAAATVEEIEQLNILQAAMLAMTRAVSGLDIPVQCVLIDGNRLPR-MN 129

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               AVI GD+ S SIAAAS++AKV RDR M    ++YP+YGF  H GY T  H + +  
Sbjct: 130 LPMQAVIHGDATSASIAAASVLAKVARDRYMLALDQQYPEYGFCKHKGYGTKAHYEALAA 189

Query: 191 KGPSCIHRLTFRPLRNLS 208
            G S +HR +F  L+NL+
Sbjct: 190 HGISPVHRRSF--LKNLT 205


>gi|289427787|ref|ZP_06429498.1| ribonuclease HII [Propionibacterium acnes J165]
 gi|289159051|gb|EFD07244.1| ribonuclease HII [Propionibacterium acnes J165]
          Length = 217

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELY 72
           E  +    + PVAG DE GRGA AGP+V AA+ILD        G+ DSK +S  KRE L+
Sbjct: 17  ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 76

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   A+ +S         D+  + +A +  +  AV  L V P   L DG  + + L  
Sbjct: 77  NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 135

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               + KGDS+   +AAASI+AKV RDR+M     + P Y F  H GY TA HQ+ +KE 
Sbjct: 136 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 195

Query: 192 GPSCIHRLTFRPLRN 206
           GPS  HR+++  +R 
Sbjct: 196 GPSRQHRMSYANVRR 210


>gi|325479041|gb|EGC82142.1| ribonuclease HII [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 209

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 81/180 (45%), Positives = 109/180 (60%), Gaps = 3/180 (1%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81
              +AGIDEVGRG LAGPVV  A+I+  ++   GI DSKK+S KK   L EKI    I  
Sbjct: 18  YKLIAGIDEVGRGPLAGPVVTCAVIMKSDSAIDGITDSKKLSRKKMLNLKEKILEDTICY 77

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           +   A+ + ID+ NI  AT  A+  A+ NL++ P   LID   I  D+P     ++KGD 
Sbjct: 78  AYGYANPRLIDRVNIKNATHKAMEDALNNLKIKPEIVLIDAERIDTDIP--QLNIVKGDL 135

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
               I+ ASI+AK+ RD +M    K YP+YGFD+++GY T KH Q ++E G + IHR TF
Sbjct: 136 NEYVISCASILAKIRRDDIMINFSKLYPNYGFDTNMGYGTKKHYQGLEEYGETSIHRQTF 195


>gi|282854576|ref|ZP_06263911.1| ribonuclease HII [Propionibacterium acnes J139]
 gi|282582158|gb|EFB87540.1| ribonuclease HII [Propionibacterium acnes J139]
          Length = 217

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELY 72
           E  +    + PVAG DE GRGA AGP+V AA+ILD        G+ DSK +S  KRE L+
Sbjct: 17  ERALTRAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 76

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   A+ +S         D+  + +A +  +  AV  L V P   L DG  + + L  
Sbjct: 77  NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 135

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               + KGDS+   +AAASI+AKV RDR+M     + P Y F  H GY TA HQ+ +KE 
Sbjct: 136 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 195

Query: 192 GPSCIHRLTFRPLRN 206
           GPS  HR+++  +R 
Sbjct: 196 GPSRQHRMSYANVRR 210


>gi|314923942|gb|EFS87773.1| ribonuclease HII [Propionibacterium acnes HL001PA1]
 gi|314966113|gb|EFT10212.1| ribonuclease HII [Propionibacterium acnes HL082PA2]
 gi|315094908|gb|EFT66884.1| ribonuclease HII [Propionibacterium acnes HL060PA1]
 gi|315104180|gb|EFT76156.1| ribonuclease HII [Propionibacterium acnes HL050PA2]
 gi|327328010|gb|EGE69779.1| ribonuclease HII [Propionibacterium acnes HL103PA1]
          Length = 204

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELY 72
           E  +    + PVAG DE GRGA AGP+V AA+ILD        G+ DSK +S  KRE L+
Sbjct: 4   ERALTRAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 63

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   A+ +S         D+  + +A +  +  AV  L V P   L DG  + + L  
Sbjct: 64  NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 122

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               + KGDS+   +AAASI+AKV RDR+M     + P Y F  H GY TA HQ+ +KE 
Sbjct: 123 PDLGMWKGDSVCACVAAASIVAKVARDRIMIALDAEIPGYDFAVHKGYATALHQRRLKEL 182

Query: 192 GPSCIHRLTFRPLRN 206
           GPS  HR+++  +R 
Sbjct: 183 GPSRQHRMSYANVRR 197


>gi|317058954|ref|ZP_07923439.1| ribonuclease HII [Fusobacterium sp. 3_1_5R]
 gi|313684630|gb|EFS21465.1| ribonuclease HII [Fusobacterium sp. 3_1_5R]
          Length = 211

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 82/200 (41%), Positives = 115/200 (57%), Gaps = 10/200 (5%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHK 66
           E+  ++ +    EK    + G+DE GRG LAGPVV AA +L   +     I DSKK++ K
Sbjct: 7   EQSLYDFDVEKGEK----IVGVDEAGRGPLAGPVVAAATLLKQYDRSLDSIQDSKKLTEK 62

Query: 67  KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ----VIPRSALIDG 122
           KRE L+  I     + I  AS + I+K+NI  AT  A+  A+ NL+    +   + L+DG
Sbjct: 63  KREALFSVIPQFFYVGIGQASVEEIEKYNILNATFLAMRRALANLEEQVEIQDATILVDG 122

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
                +   +  AV+KGD+ SLSIAAASI+AKVTRD  +    K+YPDY F+ H GY T 
Sbjct: 123 NFTIRECQRKQEAVVKGDAKSLSIAAASIMAKVTRDHKLVELAKQYPDYLFEKHKGYGTK 182

Query: 183 KHQQVIKEKGPSC-IHRLTF 201
            H++ I   GP   +HR +F
Sbjct: 183 VHREKILSLGPIPGVHRDSF 202


>gi|257452411|ref|ZP_05617710.1| ribonuclease HII [Fusobacterium sp. 3_1_5R]
          Length = 210

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 82/200 (41%), Positives = 115/200 (57%), Gaps = 10/200 (5%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHK 66
           E+  ++ +    EK    + G+DE GRG LAGPVV AA +L   +     I DSKK++ K
Sbjct: 6   EQSLYDFDVEKGEK----IVGVDEAGRGPLAGPVVAAATLLKQYDRSLDSIQDSKKLTEK 61

Query: 67  KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ----VIPRSALIDG 122
           KRE L+  I     + I  AS + I+K+NI  AT  A+  A+ NL+    +   + L+DG
Sbjct: 62  KREALFSVIPQFFYVGIGQASVEEIEKYNILNATFLAMRRALANLEEQVEIQDATILVDG 121

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
                +   +  AV+KGD+ SLSIAAASI+AKVTRD  +    K+YPDY F+ H GY T 
Sbjct: 122 NFTIRECQRKQEAVVKGDAKSLSIAAASIMAKVTRDHKLVELAKQYPDYLFEKHKGYGTK 181

Query: 183 KHQQVIKEKGPSC-IHRLTF 201
            H++ I   GP   +HR +F
Sbjct: 182 VHREKILSLGPIPGVHRDSF 201


>gi|295130970|ref|YP_003581633.1| ribonuclease HII [Propionibacterium acnes SK137]
 gi|291377067|gb|ADE00922.1| ribonuclease HII [Propionibacterium acnes SK137]
          Length = 217

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELY 72
           E  +    + PVAG DE GRGA AGP+V AA+ILD        G+ DSK +S  KRE L+
Sbjct: 17  ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 76

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   A+ +S         D+  + +A +  +  AV  L V P   L DG  + + L  
Sbjct: 77  NVIMDKALAVSWVGVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 135

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               + KGDS+   +AAASI+AKV RDR+M     + P Y F  H GY TA HQ+ +KE 
Sbjct: 136 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 195

Query: 192 GPSCIHRLTFRPLRN 206
           GPS  HR+++  +R 
Sbjct: 196 GPSRQHRMSYANVRR 210


>gi|118471655|ref|YP_886782.1| ribonuclease HII [Mycobacterium smegmatis str. MC2 155]
 gi|166226626|sp|A0QV44|RNH2_MYCS2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|118172942|gb|ABK73838.1| ribonuclease HII [Mycobacterium smegmatis str. MC2 155]
          Length = 272

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 77/196 (39%), Positives = 111/196 (56%), Gaps = 4/196 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE+ +    + PVAG+DEVGRGA AGP+VVAA +L PN +     ++DSKK+  K+RE L
Sbjct: 20  LESALYRNGLGPVAGVDEVGRGACAGPLVVAACVLGPNRLESLAALDDSKKLGEKERERL 79

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+   +       +D+  +H A ++ +  AV  L V P   L DG  +P  L 
Sbjct: 80  FPLIRRYALAYHVVFIPSHEVDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP-GLS 138

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD+ +  IAAAS++AKV+RDRLM    +++P YGF  H GY T  H   +  
Sbjct: 139 VPSLPVIGGDAAAACIAAASVLAKVSRDRLMVEMEEQHPGYGFAEHKGYITPAHTAALTR 198

Query: 191 KGPSCIHRLTFRPLRN 206
            GP   HR ++  +R 
Sbjct: 199 HGPCVEHRYSYVNVRR 214


>gi|148377935|ref|YP_001256811.1| ribonuclease H II [Mycoplasma agalactiae PG2]
 gi|148291981|emb|CAL59373.1| Ribonuclease H II [Mycoplasma agalactiae PG2]
          Length = 206

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 74/196 (37%), Positives = 112/196 (57%), Gaps = 3/196 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            + E          +AG+DE GRG  AGP+VVA++I+    I   I DSKK+S K+R+ L
Sbjct: 2   LDYELKNWND-YKLIAGVDEAGRGCCAGPLVVASVIMPNGYINENIKDSKKLSAKQRDIL 60

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +++I    I   I +    Y+DK+N  K++ + +   +++L   P   + D   I E L 
Sbjct: 61  FDEILKVCIDYHIVTLPSSYVDKYNPKKSSKNGMKICIDSLNTKPDLVITDFEKIDE-LA 119

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            +   ++KGDSIS ++A ASI+AKVTRDR M     KY +Y F+ H GY T +H + I +
Sbjct: 120 IKQVNLVKGDSISFNVACASILAKVTRDRYMIKIANKYKEYEFEKHKGYCTKRHTESIIK 179

Query: 191 KGPSCIHRLTFRPLRN 206
            G S  HRLT++ +R 
Sbjct: 180 YGASPEHRLTYKNVRE 195


>gi|268611246|ref|ZP_06144973.1| ribonuclease HII [Ruminococcus flavefaciens FD-1]
          Length = 208

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 90/201 (44%), Positives = 127/201 (63%), Gaps = 5/201 (2%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F+ ++ +R K+   + GIDE GRG LAG V  AA+IL+ + +   +NDSKKIS K+R
Sbjct: 8   KELFDYDSELR-KDYPVIVGIDEAGRGPLAGDVYAAAVILNDDTLINYLNDSKKISEKRR 66

Query: 69  EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E LY+++   A   SI++AS + ID+ NI +AT  A+  A E L V     L+DG  +P 
Sbjct: 67  ELLYDEVIEKAEKYSIATASVKEIDELNILQATFLAMKRAYEGLGVRADLVLVDGNKLP- 125

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           D+  +   VIKGD+ S SI+AASI+AKV RDR MR   +KYP Y FD H GY T  H + 
Sbjct: 126 DIDAEMRYVIKGDATSASISAASILAKVARDRYMRDLAEKYPQYEFDRHKGYGTKLHYEK 185

Query: 188 IKEKGPSCIHRLTFRPLRNLS 208
           ++E G S +HR +F  L+ L+
Sbjct: 186 LEEFGISEVHRRSF--LKKLT 204


>gi|297587481|ref|ZP_06946125.1| ribonuclease H [Finegoldia magna ATCC 53516]
 gi|297574170|gb|EFH92890.1| ribonuclease H [Finegoldia magna ATCC 53516]
          Length = 207

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 79/203 (38%), Positives = 110/203 (54%), Gaps = 19/203 (9%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREEL 71
           E E  +       + G+DEVGRG LAGPVV  AII+  N  I  G+ DSKK+S KKR + 
Sbjct: 8   EFEEEL-------ICGVDEVGRGPLAGPVVTCAIIMPKNCEIIDGVTDSKKLSEKKRIKF 60

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALIDGRS 124
            + I   A+  S++      ID+ NI +A   ++  AVE+L+      + P   +ID   
Sbjct: 61  KDMILDQALAYSVNFVDQSVIDEINIKQANRLSMKRAVESLKTKDNKFIKPDLIVIDAEK 120

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           I  D+  +  + +KGD     I+ ASI+AKV RD  M+     YP YGF+ H GY T  H
Sbjct: 121 IDTDI--KQMSFVKGDEKLYPISCASIVAKVIRDEYMKDMAVIYPQYGFEKHKGYGTKLH 178

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
           +++I E G   +HR TF  LR L
Sbjct: 179 REMILEHGECPLHRKTF--LRKL 199


>gi|226939651|ref|YP_002794724.1| ribonuclease HII [Laribacter hongkongensis HLHK9]
 gi|259494068|sp|C1D4C1|RNH2_LARHH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|226714577|gb|ACO73715.1| Rnh2 [Laribacter hongkongensis HLHK9]
          Length = 198

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 107/185 (57%), Gaps = 2/185 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             V G+DE GRG LAG V  AA+ILDP     G+ DSKK+S  +RE L   I   A+   
Sbjct: 3   RRVCGVDEAGRGPLAGGVYAAAVILDPARPVEGLADSKKLSAARREALAPLIRERALAWC 62

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED-LPCQAFAVIKGDS 141
           ++ A+ + ID+ NI  AT+ A+  AV+ L V P +  +DG  +P   L   A A++KGD+
Sbjct: 63  VAWATVEEIDRLNILHATMLAMCRAVDGLAVPPDAIEVDGNRVPPFVLDIPARAIVKGDA 122

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
              +I+AASI+AK  RD        +YP YGF +H GYPTA H   I+  G   +HR +F
Sbjct: 123 TVAAISAASILAKTARDAECLELDARYPGYGFAAHKGYPTAAHVAAIERLGVLPVHRRSF 182

Query: 202 RPLRN 206
            P++ 
Sbjct: 183 GPVKR 187


>gi|254821206|ref|ZP_05226207.1| ribonuclease HII [Mycobacterium intracellulare ATCC 13950]
          Length = 239

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/198 (38%), Positives = 111/198 (56%), Gaps = 4/198 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           LE+ +    + PVAG+DEVGRGA AGP+VVAA +L P  +     ++DSKK++   RE+L
Sbjct: 20  LESALYRNGLGPVAGVDEVGRGACAGPLVVAACVLGPGRMESLAALDDSKKLTEAAREKL 79

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+   +       +D+  +H A ++ +  AV  L V P   L DG  +P  L 
Sbjct: 80  FPLIRRYALAYHVVFIPPAEVDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP-GLA 138

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD+++  IAAAS++AKV+RDRLM      +P YGF  H GY T  H   +  
Sbjct: 139 VPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMEADHPGYGFALHKGYSTPAHSTALAR 198

Query: 191 KGPSCIHRLTFRPLRNLS 208
            GP   HR +F  +R ++
Sbjct: 199 LGPCPEHRYSFINVRRVA 216


>gi|88706742|ref|ZP_01104444.1| Ribonuclease HII [Congregibacter litoralis KT71]
 gi|88699063|gb|EAQ96180.1| Ribonuclease HII [Congregibacter litoralis KT71]
          Length = 204

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 89/197 (45%), Positives = 124/197 (62%), Gaps = 3/197 (1%)

Query: 13  ELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           + EA + E  +   + G+DEVGRG LAG VV AA +LDP N   G+ DSKK++ K+RE L
Sbjct: 5   DWEAAIAELPDDACIVGVDEVGRGPLAGDVVAAAAVLDPANPIVGLTDSKKLTAKRREVL 64

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            E++ + A  I++  AS   ID  NI +A+L A++ AV+ L + P   L+DGR +P    
Sbjct: 65  REELLTRARGIALGRASPVEIDTLNILQASLLAMWRAVDALGLEPDLVLVDGRQLP-SWD 123

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             + AV+KGD+   +IAAASI+AKV RD+ M   H  +P YGFD H GYPTA H   +K 
Sbjct: 124 YASIAVVKGDARVPAIAAASIVAKVARDQYMCEQHALWPHYGFDRHKGYPTAAHMAALKT 183

Query: 191 KGPSCIHRLTFRPLRNL 207
            G S +HR +F P+R +
Sbjct: 184 YGVSPLHRRSFAPVRAV 200


>gi|226305946|ref|YP_002765906.1| ribonuclease HII [Rhodococcus erythropolis PR4]
 gi|259494071|sp|C0ZXT2|RNH2_RHOE4 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|226185063|dbj|BAH33167.1| putative ribonuclease HII [Rhodococcus erythropolis PR4]
          Length = 226

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 76/194 (39%), Positives = 110/194 (56%), Gaps = 4/194 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREEL 71
           +E+ +    + PVAG+DE GRGA AGP+V+AA +L   P      ++DSKK++ + REEL
Sbjct: 19  MESALARTGLGPVAGVDEAGRGACAGPLVIAACVLAPKPQAALARLDDSKKLTERAREEL 78

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+  S+ S     +D+  IH A ++ +  AV  L + P   L DG  +P  L 
Sbjct: 79  FPAIKRLALAWSVVSVPAAEVDQIGIHVANIEGMRRAVAGLDLEPGYVLTDGFRVP-GLT 137

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD  +  IAAAS++AKVTRDR+M    + +P YGF  H GY T  H   + E
Sbjct: 138 APSLPVIGGDGAAACIAAASVLAKVTRDRVMTEMDETHPGYGFAIHKGYSTPLHMDALDE 197

Query: 191 KGPSCIHRLTFRPL 204
            GP   HR+T+  +
Sbjct: 198 LGPCPEHRMTYANV 211


>gi|227499923|ref|ZP_03930016.1| ribonuclease H [Anaerococcus tetradius ATCC 35098]
 gi|227218032|gb|EEI83305.1| ribonuclease H [Anaerococcus tetradius ATCC 35098]
          Length = 209

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 78/190 (41%), Positives = 113/190 (59%), Gaps = 4/190 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           +++  V EK    +AGIDEVGRG LAGPVV  A+I+  ++   G+ DSKK++ KK   L 
Sbjct: 9   DIKRKVHEK-YELIAGIDEVGRGPLAGPVVTCALIMKKDSKIEGVTDSKKLTRKKMLVLK 67

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           +KI +  +  +   A+   IDK NI  AT  A+  A+ NL++ P   LID   I  DLP 
Sbjct: 68  DKILADCLTYAYGYANSLLIDKLNIKNATHKAMEDALNNLKIRPEIVLIDAERINTDLP- 126

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               ++KGD     I+ ASI+AK+ RD +M    K Y  YGF++++GY T KH + +++ 
Sbjct: 127 -QMNIVKGDLNEYVISCASILAKIRRDDIMINFSKIYKGYGFETNMGYGTKKHYEGLEKY 185

Query: 192 GPSCIHRLTF 201
           G + IHR TF
Sbjct: 186 GETPIHRQTF 195


>gi|323141923|ref|ZP_08076783.1| ribonuclease HII [Phascolarctobacterium sp. YIT 12067]
 gi|322413590|gb|EFY04449.1| ribonuclease HII [Phascolarctobacterium sp. YIT 12067]
          Length = 283

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 80/199 (40%), Positives = 123/199 (61%), Gaps = 2/199 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            +LE  + ++    +AG+DE GRG LAGP+V+AA+IL  +    G+NDSK++S  KR+ L
Sbjct: 62  LKLERELYDEGCELIAGVDEAGRGPLAGPLVIAAVILPKDVFISGLNDSKQLSAAKRDML 121

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y ++ + A+ I ++  S   ID+ NI+ AT   +   +ENL   P++ALID   +     
Sbjct: 122 YNEVMAKALDIEVNIVSVSNIDELNIYYATQQGMAQVLENLHCRPQAALIDAMPVKVP-G 180

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            +  +V+ GD++S SIAAASIIAKVTRDR+M      YP YGF  + GY +  H Q + E
Sbjct: 181 MKIESVVHGDALSASIAAASIIAKVTRDRIMERLDLVYPAYGFAHNKGYGSGAHMQAVSE 240

Query: 191 KGPSCIHRLTFRPLRNLSV 209
            G +  HR +F P++++ +
Sbjct: 241 LGATRWHRRSFEPVKSMQL 259


>gi|271970454|ref|YP_003344650.1| ribonuclease H [Streptosporangium roseum DSM 43021]
 gi|270513629|gb|ACZ91907.1| Ribonuclease H [Streptosporangium roseum DSM 43021]
          Length = 222

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 76/199 (38%), Positives = 108/199 (54%), Gaps = 3/199 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P + LE ++       VAG+DEVGRGA AGPV V A++ D +  P G+ DSK +S  +R 
Sbjct: 3   PSYALERLLSADGTKLVAGVDEVGRGAWAGPVAVCAVVTDLSEPPAGLTDSKMLSPARRT 62

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            +  +IT  A  I    ASH+ ID   + +A   A   A+  L V P + ++DG+     
Sbjct: 63  SMVAEITGWAAGIGYGEASHEEIDALGMTEALRRAAGRALAGLPVRPDAVILDGKHDYLG 122

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
            P      IKGD   +S+AAAS+IAKV RD  M     +  +YGF  + GYP+  HQ  +
Sbjct: 123 APWPVRCEIKGDLSCVSVAAASVIAKVRRDAYMASLGLE--EYGFADNAGYPSPVHQAAL 180

Query: 189 KEKGPSCIHRLTFRPLRNL 207
              GP+  HRL++  L +L
Sbjct: 181 ASLGPTAHHRLSWSYLDDL 199


>gi|313623979|gb|EFR94078.1| ribonuclease HII [Listeria innocua FSL J1-023]
          Length = 261

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 86/195 (44%), Positives = 117/195 (60%), Gaps = 3/195 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E  + ++    +AG+DEVGRG LAGPVV AA+IL  +    GINDSK+++  KR+ L+
Sbjct: 60  RYETDLFKQGFQYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLNEAKRDMLF 119

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           E I   AI I I    H  ID+ NI++AT  A+  A+  L   P   LID    P     
Sbjct: 120 EVIKKEAISIGIGIIDHDIIDQVNIYEATKIAMREALVKLNPAPDFVLIDAM--PLKYSE 177

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              ++IKGD+ S+SIAAASIIAKVTRDR+M+   + YP Y F +++GY T KH   +   
Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRMMQQYDELYPGYDFANNMGYGTKKHLNGLDTI 237

Query: 192 GPSCIHRLTFRPLRN 206
           G   IHRL+F P++ 
Sbjct: 238 GICPIHRLSFSPVKE 252


>gi|313678810|ref|YP_004056550.1| ribonuclease HIII [Mycoplasma bovis PG45]
 gi|312950535|gb|ADR25130.1| ribonuclease HIII [Mycoplasma bovis PG45]
          Length = 207

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 74/201 (36%), Positives = 120/201 (59%), Gaps = 6/201 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            +E +     K+   +AG+DE GRG  AGP+VVA++I+  N +   INDSKK+S K+RE 
Sbjct: 3   DYEFKNF---KDYKLIAGVDEAGRGCCAGPLVVASVIMPKNYVNERINDSKKLSPKQREI 59

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L+++I  + I   I +    Y+D++N  +++ + +   +++L   P   + D   I + L
Sbjct: 60  LFDEIIDNCIDYYILTLPASYVDEYNPKQSSKNGMKICIDSLNAKPEVVITDFEKI-DHL 118

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             +   ++KGDSIS ++A ASI+AKVTRDR M     KY +Y F+ H GY T KH   I 
Sbjct: 119 DIKQINLVKGDSISFNVACASILAKVTRDRYMIKIADKYKEYEFEKHKGYCTKKHTDAII 178

Query: 190 EKGPSCIHRLTFRPL-RNLSV 209
           + G +  HRLT++ + + +S+
Sbjct: 179 KYGVTAEHRLTYKNVIKAMSI 199


>gi|315917438|ref|ZP_07913678.1| ribonuclease HII [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691313|gb|EFS28148.1| ribonuclease HII [Fusobacterium gonidiaformans ATCC 25563]
          Length = 211

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 80/200 (40%), Positives = 115/200 (57%), Gaps = 10/200 (5%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHK 66
           E+  ++ +    EK    + G+DE GRG LAGPVV AA +L   +     I DSKK++ K
Sbjct: 7   EQSLYDFDVEKGEK----IVGVDEAGRGPLAGPVVAAAALLKQYDRSLEPIQDSKKLTEK 62

Query: 67  KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ----VIPRSALIDG 122
           KRE L+  I     + I  AS + I+K+NI  AT  A+  A+ NL+    +   + L+DG
Sbjct: 63  KREALFSVIPQFFYVGIGQASVEEIEKYNILNATFLAMRRALGNLEEQVEIQDATILVDG 122

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
                +   +  A++KGD+ SLSIAAASI+AKVTRD  +    ++YPDY F+ H GY T 
Sbjct: 123 NFTIRECERKQEAIVKGDAKSLSIAAASIMAKVTRDHELVELAEQYPDYFFEKHKGYGTK 182

Query: 183 KHQQVIKEKGPSC-IHRLTF 201
            H++ I   GP   +HR +F
Sbjct: 183 VHREKILSLGPIPGVHRDSF 202


>gi|303234893|ref|ZP_07321518.1| ribonuclease HII [Finegoldia magna BVS033A4]
 gi|302494011|gb|EFL53792.1| ribonuclease HII [Finegoldia magna BVS033A4]
          Length = 207

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 81/203 (39%), Positives = 112/203 (55%), Gaps = 19/203 (9%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREEL 71
           E E  +       + GIDEVGRG LAGPVV  AII+  N  I  G+ DSKK+S KKR + 
Sbjct: 8   EFEEEL-------ICGIDEVGRGPLAGPVVTCAIIMPKNCEIIDGVTDSKKLSEKKRIKF 60

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALIDGRS 124
            + I + A+  S++      ID+ NI +AT  ++  AVE+L+      + P   +ID   
Sbjct: 61  KDMILNQALAYSVNFVDQGVIDEINIKQATRLSMKRAVESLKTKDNKFIKPDLIVIDAEE 120

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           I  D+  +  + +KGD     I+ ASI+AKV RD  M+     YP YGF+ H GY T  H
Sbjct: 121 IDTDI--KQMSFVKGDEKLYPISCASIVAKVIRDEYMKDMAVIYPQYGFEKHKGYGTKLH 178

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
           +++I E G   +HR TF  LR L
Sbjct: 179 REMILEHGECPLHRKTF--LRKL 199


>gi|257466281|ref|ZP_05630592.1| ribonuclease HII [Fusobacterium gonidiaformans ATCC 25563]
          Length = 210

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 80/200 (40%), Positives = 115/200 (57%), Gaps = 10/200 (5%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHK 66
           E+  ++ +    EK    + G+DE GRG LAGPVV AA +L   +     I DSKK++ K
Sbjct: 6   EQSLYDFDVEKGEK----IVGVDEAGRGPLAGPVVAAAALLKQYDRSLEPIQDSKKLTEK 61

Query: 67  KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ----VIPRSALIDG 122
           KRE L+  I     + I  AS + I+K+NI  AT  A+  A+ NL+    +   + L+DG
Sbjct: 62  KREALFSVIPQFFYVGIGQASVEEIEKYNILNATFLAMRRALGNLEEQVEIQDATILVDG 121

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
                +   +  A++KGD+ SLSIAAASI+AKVTRD  +    ++YPDY F+ H GY T 
Sbjct: 122 NFTIRECERKQEAIVKGDAKSLSIAAASIMAKVTRDHELVELAEQYPDYFFEKHKGYGTK 181

Query: 183 KHQQVIKEKGPSC-IHRLTF 201
            H++ I   GP   +HR +F
Sbjct: 182 VHREKILSLGPIPGVHRDSF 201


>gi|163791099|ref|ZP_02185519.1| ribonuclease HII [Carnobacterium sp. AT7]
 gi|159873655|gb|EDP67739.1| ribonuclease HII [Carnobacterium sp. AT7]
          Length = 257

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 93/202 (46%), Positives = 128/202 (63%), Gaps = 3/202 (1%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
            +    ++E    E+    +AGIDEVGRG LAGPVV AA++L  +    GINDSK++S  
Sbjct: 56  KQEEMLQIERYFWEQGTQYIAGIDEVGRGPLAGPVVAAAVVLPKDFDVLGINDSKQLSSA 115

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           KRE L+E+I  +A+ I I    H  IDK NI++AT  A+  A++ L V P   LID   +
Sbjct: 116 KREALFEQIQEAAVAIGIGVKDHHIIDKVNIYEATKLAMIEAIQQLPVQPEQLLIDAMHL 175

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  +P ++F  IKGD+ S+SIAAASIIAKVTRDR+M      YP YGF  + GY T  H 
Sbjct: 176 PVSIPQESF--IKGDAKSISIAAASIIAKVTRDRMMADYDDLYPGYGFAKNAGYGTKVHL 233

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
           + ++++G   IHR TF P++N+
Sbjct: 234 EGLEKQGACPIHRKTFAPVKNV 255


>gi|126663331|ref|ZP_01734329.1| ribonuclease HII [Flavobacteria bacterium BAL38]
 gi|126624989|gb|EAZ95679.1| ribonuclease HII [Flavobacteria bacterium BAL38]
          Length = 219

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 21/204 (10%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
           N+    G DE GRG LAGPV  AAI+L  +     +NDSK++S K R++L   +   AI 
Sbjct: 8   NLTLEIGTDEAGRGCLAGPVTAAAILLPEHFENTLLNDSKQLSEKNRKKLRPILEELAIS 67

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL----------- 129
            +++      ID+ NI  A++ A+  ++  L   P   ++DG                  
Sbjct: 68  YAVTHIFSNEIDEINILNASMKAMQKSILQLNTKPEYIIVDGNRPLNGKLGMKQKTGKIF 127

Query: 130 ---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
                         +++KGD+  LSIAAAS++AK  RD  M   H+++P Y +  + GYP
Sbjct: 128 SEEEIQFLKSIPNTSIVKGDAKYLSIAAASVLAKTYRDDYMDAIHEEFPMYNWKKNKGYP 187

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPL 204
           T +H++ IK+ G    HR++FR L
Sbjct: 188 TVEHREAIKKYGACKYHRMSFRLL 211


>gi|114328522|ref|YP_745679.1| ribonuclease HII [Granulibacter bethesdensis CGDNIH1]
 gi|122326524|sp|Q0BQZ6|RNH2_GRABC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|114316696|gb|ABI62756.1| ribonuclease HII [Granulibacter bethesdensis CGDNIH1]
          Length = 219

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 87/206 (42%), Positives = 116/206 (56%), Gaps = 11/206 (5%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKI 63
           + P   LE          VAG+DEVGRG LAGPVV AA++L  +  P  +    +DSKK+
Sbjct: 10  QMPDDRLEREAG----GLVAGVDEVGRGPLAGPVVAAAVLLPASGFPAHLAGLIDDSKKL 65

Query: 64  SHKKREELYEKITSSA--IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
               R+  +  + +     I I +AS   I + NI  A++ A+  AVE L  IP  AL+D
Sbjct: 66  DAAARDRAFAALLAEPGITIGIGAASVTEIGRLNILHASMLAMRRAVERLPTIPDLALVD 125

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           G   P  LPC A  V+ GD+  LSIAAASIIAKV RDR M    ++YP YG++ + GYPT
Sbjct: 126 GNRAPA-LPCAARCVVGGDAKCLSIAAASIIAKVVRDRAMARLARRYPVYGWERNAGYPT 184

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207
             H+  + E GP+  HR  F  +R L
Sbjct: 185 PAHRAGLTEFGPTPHHRTAFGLVRQL 210


>gi|330993887|ref|ZP_08317819.1| Ribonuclease HII [Gluconacetobacter sp. SXCC-1]
 gi|329759155|gb|EGG75667.1| Ribonuclease HII [Gluconacetobacter sp. SXCC-1]
          Length = 217

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 82/204 (40%), Positives = 119/204 (58%), Gaps = 10/204 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISH 65
            P + LE      +   VAG+DEVGRG LAGPVV AA++     P  +   ++DSKK+  
Sbjct: 1   MPDYTLEHA----HGGRVAGVDEVGRGPLAGPVVAAAVMFPGSVPGVLADRLDDSKKLKP 56

Query: 66  KKREELYEKITSS--AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
             R  LY+ + +S   +I + +AS   I+++NI +A+  A+  AV  L   P   L+DG 
Sbjct: 57  ALRARLYDVLLASPDVLIGVGAASVAEIERYNILRASWLAMQRAVGRLPRSPEFILVDGN 116

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           + P D  C A  V+ GD ISLSIAAAS++AKV RDRLM    +++P YG++ + GY TA 
Sbjct: 117 AAP-DFGCPAQCVVGGDGISLSIAAASVVAKVIRDRLMARLARRWPAYGWERNAGYGTAI 175

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H+  +  +G S  HR  F  +R +
Sbjct: 176 HRAGLLAQGASPHHRAAFGTVRRI 199


>gi|289208655|ref|YP_003460721.1| ribonuclease H [Thioalkalivibrio sp. K90mix]
 gi|288944286|gb|ADC71985.1| Ribonuclease H [Thioalkalivibrio sp. K90mix]
          Length = 226

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 86/181 (47%), Positives = 111/181 (61%), Gaps = 2/181 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG LAGPVV AA+IL  +    G+ DSKK+S  +R+ L  +I   A+  ++
Sbjct: 35  WVAGVDEVGRGPLAGPVVAAAVILPESFAAPGLTDSKKLSAGRRQALDVEIRERAVAWAL 94

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID  NIH+ATL A+  AV  L   P   L+DGR  PE  P  A A++ GD   
Sbjct: 95  GRAEAAEIDALNIHRATLLAMQRAVAALSQAPDHLLVDGRFTPEG-PWSAEAIVGGDGSV 153

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +I+AAS+IAKV RD  M   H++YPDYGFD H GYPTA H+  +   GP   HR +F P
Sbjct: 154 AAISAASVIAKVARDAEMTALHERYPDYGFDRHAGYPTAYHRDALARLGPCVEHRRSFGP 213

Query: 204 L 204
           +
Sbjct: 214 V 214


>gi|217076334|ref|YP_002334050.1| ribonuclease HII [Thermosipho africanus TCF52B]
 gi|226736825|sp|B7IF45|RNH2_THEAB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|217036187|gb|ACJ74709.1| ribonuclease HII [Thermosipho africanus TCF52B]
          Length = 220

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 80/186 (43%), Positives = 118/186 (63%), Gaps = 6/186 (3%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
             VAG+DE GRG L GPVV AA+IL  N    G++DSKK++ +KRE+L+ +I   +  +I
Sbjct: 1   MIVAGVDEAGRGPLFGPVVAAAVIL--NEEIDGLDDSKKLTSRKREKLFLEIIKKSYFAI 58

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           S A+   IDK NI  AT  A+  A+E L  ++    A +DG+++    P +   ++KGDS
Sbjct: 59  SIATADEIDKFNILHATEIAMDRALERLRKKINFDIAFVDGKNLNLKFPFK--CIVKGDS 116

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +   I+AASI+AKV RDR++    KK+  Y  + H GYPT  H ++IKE G + +HRLT+
Sbjct: 117 LVKEISAASILAKVVRDRIIVSYAKKFSSYMLEKHKGYPTQLHLKLIKEHGLTPLHRLTY 176

Query: 202 RPLRNL 207
           +P+  L
Sbjct: 177 KPVMEL 182


>gi|313819655|gb|EFS57369.1| ribonuclease HII [Propionibacterium acnes HL046PA2]
          Length = 213

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELY 72
           E  +    + PVAG DE GRGA AGP+V AA+ILD        G+ DSK +S  KRE L+
Sbjct: 13  ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 72

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   A+ +S         D+  + +A +  +  AV  L V P   L DG  + + L  
Sbjct: 73  NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 131

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               + KGDS+   +AAASI+AKV RDR+M     + P Y F  H GY TA HQ+ +KE 
Sbjct: 132 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 191

Query: 192 GPSCIHRLTFRPLRN 206
           GPS  HR+++  +R 
Sbjct: 192 GPSRQHRMSYANVRR 206


>gi|313811659|gb|EFS49373.1| ribonuclease HII [Propionibacterium acnes HL083PA1]
          Length = 204

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELY 72
           E  +    + PVAG DE GRGA AGP+V AA+ILD        G+ DSK +S  KRE L+
Sbjct: 4   ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 63

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   A+ +S         D+  + +A +  +  AV  L V P   L DG  + + L  
Sbjct: 64  NVIMDKALAVSWVGVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFQV-DGLTV 122

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               + KGDS+   +AAASI+AKV RDR+M     + P Y F  H GY TA HQ+ +KE 
Sbjct: 123 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 182

Query: 192 GPSCIHRLTFRPLRN 206
           GPS  HR+++  +R 
Sbjct: 183 GPSRQHRMSYANVRR 197


>gi|296116694|ref|ZP_06835304.1| ribonuclease HII [Gluconacetobacter hansenii ATCC 23769]
 gi|295976906|gb|EFG83674.1| ribonuclease HII [Gluconacetobacter hansenii ATCC 23769]
          Length = 235

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 80/205 (39%), Positives = 117/205 (57%), Gaps = 10/205 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISH 65
            P +  E      +   VAG+DEVGRG LAGPVV AA++     P+++   ++DSKK+  
Sbjct: 1   MPDYTREKA----HGGRVAGVDEVGRGPLAGPVVAAAVMFMHGVPDDLASRLDDSKKLRP 56

Query: 66  KKREELYEKITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
             R   + ++ +  S +I +++AS   I++HNI +A   A+  AV  L   P   L+DG 
Sbjct: 57  AARLRAFAELRALPSVLIGVAAASVTEIERHNILRAAHIAMQRAVARLPQRPDLVLVDGN 116

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           + P D  C    V+ GDS SLSIAAASI+AKV RDRLM     ++P YG++ + GY TA 
Sbjct: 117 ATP-DFGCATQCVVGGDSKSLSIAAASIVAKVIRDRLMERLSVRWPGYGWERNAGYGTAA 175

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLS 208
           H+  +   G +  HR  F  +R L+
Sbjct: 176 HRAALCAVGITPHHRAAFGTVRALA 200


>gi|299536766|ref|ZP_07050074.1| ribonuclease HII [Lysinibacillus fusiformis ZC1]
 gi|298727778|gb|EFI68345.1| ribonuclease HII [Lysinibacillus fusiformis ZC1]
          Length = 253

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 113/185 (61%), Gaps = 4/185 (2%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-IS 82
            +AG+DE GRG LAGPVV AA+IL  N     G+NDSK++S  KR      +   A+   
Sbjct: 69  FIAGVDEAGRGPLAGPVVTAAVILPTNCEALVGLNDSKQLSKDKRNCFATLVKEHAVSYF 128

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I   S Q ID+ NI++AT  ++  +VE+L   P   L+D  ++P  +     ++IKGD+ 
Sbjct: 129 IHFQSAQQIDELNIYEATKQSMKVSVESLSTKPDVVLVDAMTLP--ITIPQDSIIKGDAK 186

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           SL+IAAASI+AK  RD  M    +++P YGF  H GY T +H + ++E GP+  HR +F 
Sbjct: 187 SLAIAAASILAKTARDEYMEQLDEEFPMYGFGQHAGYGTKQHLKALEEFGPTIHHRKSFE 246

Query: 203 PLRNL 207
           P++++
Sbjct: 247 PIKSM 251


>gi|293400516|ref|ZP_06644661.1| ribonuclease HII [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305542|gb|EFE46786.1| ribonuclease HII [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 207

 Score =  218 bits (555), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 75/198 (37%), Positives = 108/198 (54%), Gaps = 4/198 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
             E    ++    + GIDE GRG +AGP+VVAA+          I DSKK+S KKR+ L+
Sbjct: 6   AYEIAWWKEGKKKIIGIDEAGRGPIAGPLVVAAVSFPVGFSHESIYDSKKLSEKKRKALF 65

Query: 73  EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           ++I   A    I   S Q ID+ NI++AT  A+   + N        L D   +P +   
Sbjct: 66  QEIIQLASEYHIKIVSPQIIDEQNIYRATQLAMLE-LSNSFHDADGVLTDAMPLP-NASL 123

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              +++KGD  S+SIAAASI+AKVTRD +M    K+YP YGF  H GYPT  H + +   
Sbjct: 124 DVISLVKGDQKSVSIAAASILAKVTRDCIMCAYDKQYPQYGFAKHKGYPTKGHLEAMHTY 183

Query: 192 GP-SCIHRLTFRPLRNLS 208
           G  + I+R ++ P+  + 
Sbjct: 184 GVINDIYRKSYGPVAAMQ 201


>gi|314981831|gb|EFT25924.1| ribonuclease HII [Propionibacterium acnes HL110PA3]
 gi|315090696|gb|EFT62672.1| ribonuclease HII [Propionibacterium acnes HL110PA4]
          Length = 204

 Score =  218 bits (555), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELY 72
           E  +    + PVAG DE GRGA AGP+V AA+ILD        G+ DSK +S  KRE L+
Sbjct: 4   ERALTRAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 63

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   A+ +S         D+  + +A +  +  AV  L V P   L DG  + + L  
Sbjct: 64  NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 122

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               + KGDS+   +AAASI+AKV RDR+M     + P Y F  H GY TA HQ+ +KE 
Sbjct: 123 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 182

Query: 192 GPSCIHRLTFRPLRN 206
           GPS  HR+++  +R 
Sbjct: 183 GPSRQHRMSYANVRR 197


>gi|302380879|ref|ZP_07269341.1| ribonuclease HII [Finegoldia magna ACS-171-V-Col3]
 gi|302311257|gb|EFK93276.1| ribonuclease HII [Finegoldia magna ACS-171-V-Col3]
          Length = 207

 Score =  218 bits (555), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 81/203 (39%), Positives = 111/203 (54%), Gaps = 19/203 (9%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREEL 71
           E E  +       + GIDEVGRG LAGPVV  AII+  N  I  G+ DSKK+S KKR + 
Sbjct: 8   EFEEEL-------ICGIDEVGRGPLAGPVVTCAIIMPKNCEIIEGVTDSKKLSEKKRIKF 60

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALIDGRS 124
            + I + A+  S+       ID+ NI +AT  ++  AVE+L+      + P   +ID   
Sbjct: 61  KDMILNQALAYSVDFVDQGVIDEINIKQATRLSMKKAVESLKTKDNKFIKPDLIVIDAEE 120

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           I  D+  +  + +KGD     I+ ASI+AKV RD  M+     YP YGF+ H GY T  H
Sbjct: 121 IDTDI--KQMSFVKGDEKLYPISCASIVAKVIRDEYMKEMAVIYPQYGFEKHKGYGTKLH 178

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
           +++I E G   +HR TF  LR L
Sbjct: 179 REMILEYGECPLHRKTF--LRKL 199


>gi|229491398|ref|ZP_04385222.1| ribonuclease HII [Rhodococcus erythropolis SK121]
 gi|229321683|gb|EEN87480.1| ribonuclease HII [Rhodococcus erythropolis SK121]
          Length = 226

 Score =  218 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 76/194 (39%), Positives = 110/194 (56%), Gaps = 4/194 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREEL 71
           +E+ +    + PVAG+DE GRGA AGP+V+AA +L   P      ++DSKK++ + REEL
Sbjct: 19  MESALARTGLGPVAGVDEAGRGACAGPLVIAACVLAPKPQAALARLDDSKKLTERAREEL 78

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+  S+ S     +D+  IH A ++ +  AV +L + P   L DG  +P  L 
Sbjct: 79  FPAIKRLALAWSVISVPAAEVDQIGIHVANIEGMRRAVASLDLEPGYVLTDGFRVP-GLT 137

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD  +  IAAAS++AKVTRDR+M      +P YGF  H GY T  H   + E
Sbjct: 138 APSLPVIGGDGAAACIAAASVLAKVTRDRVMTEMDDTHPGYGFAIHKGYSTPLHMDALDE 197

Query: 191 KGPSCIHRLTFRPL 204
            GP   HR+T+  +
Sbjct: 198 LGPCPEHRMTYANV 211


>gi|218961310|ref|YP_001741085.1| ribonuclease HII [Candidatus Cloacamonas acidaminovorans]
 gi|167729967|emb|CAO80879.1| ribonuclease HII [Candidatus Cloacamonas acidaminovorans]
          Length = 204

 Score =  217 bits (554), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 97/177 (54%), Positives = 118/177 (66%), Gaps = 1/177 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AGIDE GRGALAGPVV AA+IL+ N +  GINDSK ++ KKREELY +I  SAI  SI  
Sbjct: 21  AGIDEAGRGALAGPVVTAAVILNYNTLIEGINDSKLLTPKKREELYWQIVESAIDYSIVE 80

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S  YID++NI +ATL     A   L+  PR  LIDGR I  +L   A A+IKGD +  S
Sbjct: 81  ISPAYIDRYNILRATLLGFKKAFFQLKSKPRYCLIDGRDIHSELKPYAKAIIKGDQLYAS 140

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           IAAASI+AKV RD+LM      YP+YGF S+ GY TA H ++I   G S IHR +F+
Sbjct: 141 IAAASILAKVHRDKLMLAYDDIYPEYGFASNKGYGTAYHAKMICSYGLSPIHRKSFK 197


>gi|50842913|ref|YP_056140.1| ribonuclease HII [Propionibacterium acnes KPA171202]
 gi|81611490|sp|Q6A7T3|RNH2_PROAC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|50840515|gb|AAT83182.1| ribonuclease HII [Propionibacterium acnes KPA171202]
 gi|313763669|gb|EFS35033.1| ribonuclease HII [Propionibacterium acnes HL013PA1]
 gi|313794063|gb|EFS42087.1| ribonuclease HII [Propionibacterium acnes HL110PA1]
 gi|313801450|gb|EFS42701.1| ribonuclease HII [Propionibacterium acnes HL110PA2]
 gi|313807870|gb|EFS46351.1| ribonuclease HII [Propionibacterium acnes HL087PA2]
 gi|313813532|gb|EFS51246.1| ribonuclease HII [Propionibacterium acnes HL025PA1]
 gi|313816846|gb|EFS54560.1| ribonuclease HII [Propionibacterium acnes HL059PA1]
 gi|313822239|gb|EFS59953.1| ribonuclease HII [Propionibacterium acnes HL036PA1]
 gi|313823528|gb|EFS61242.1| ribonuclease HII [Propionibacterium acnes HL036PA2]
 gi|313825855|gb|EFS63569.1| ribonuclease HII [Propionibacterium acnes HL063PA1]
 gi|313829535|gb|EFS67249.1| ribonuclease HII [Propionibacterium acnes HL063PA2]
 gi|313839830|gb|EFS77544.1| ribonuclease HII [Propionibacterium acnes HL086PA1]
 gi|314914671|gb|EFS78502.1| ribonuclease HII [Propionibacterium acnes HL005PA4]
 gi|314919216|gb|EFS83047.1| ribonuclease HII [Propionibacterium acnes HL050PA1]
 gi|314920874|gb|EFS84705.1| ribonuclease HII [Propionibacterium acnes HL050PA3]
 gi|314924571|gb|EFS88402.1| ribonuclease HII [Propionibacterium acnes HL036PA3]
 gi|314930442|gb|EFS94273.1| ribonuclease HII [Propionibacterium acnes HL067PA1]
 gi|314954505|gb|EFS98911.1| ribonuclease HII [Propionibacterium acnes HL027PA1]
 gi|314957375|gb|EFT01478.1| ribonuclease HII [Propionibacterium acnes HL002PA1]
 gi|314962003|gb|EFT06104.1| ribonuclease HII [Propionibacterium acnes HL002PA2]
 gi|314963583|gb|EFT07683.1| ribonuclease HII [Propionibacterium acnes HL082PA1]
 gi|314968585|gb|EFT12683.1| ribonuclease HII [Propionibacterium acnes HL037PA1]
 gi|314978796|gb|EFT22890.1| ribonuclease HII [Propionibacterium acnes HL072PA2]
 gi|314986438|gb|EFT30530.1| ribonuclease HII [Propionibacterium acnes HL005PA2]
 gi|314990798|gb|EFT34889.1| ribonuclease HII [Propionibacterium acnes HL005PA3]
 gi|315079437|gb|EFT51430.1| ribonuclease HII [Propionibacterium acnes HL053PA2]
 gi|315083537|gb|EFT55513.1| ribonuclease HII [Propionibacterium acnes HL027PA2]
 gi|315087217|gb|EFT59193.1| ribonuclease HII [Propionibacterium acnes HL002PA3]
 gi|315089391|gb|EFT61367.1| ribonuclease HII [Propionibacterium acnes HL072PA1]
 gi|315099296|gb|EFT71272.1| ribonuclease HII [Propionibacterium acnes HL059PA2]
 gi|315100529|gb|EFT72505.1| ribonuclease HII [Propionibacterium acnes HL046PA1]
 gi|315106699|gb|EFT78675.1| ribonuclease HII [Propionibacterium acnes HL030PA1]
 gi|315108924|gb|EFT80900.1| ribonuclease HII [Propionibacterium acnes HL030PA2]
 gi|327329811|gb|EGE71567.1| ribonuclease HII [Propionibacterium acnes HL096PA3]
 gi|327334326|gb|EGE76040.1| ribonuclease HII [Propionibacterium acnes HL097PA1]
 gi|327446256|gb|EGE92910.1| ribonuclease HII [Propionibacterium acnes HL013PA2]
 gi|327451918|gb|EGE98572.1| ribonuclease HII [Propionibacterium acnes HL092PA1]
 gi|327455047|gb|EGF01702.1| ribonuclease HII [Propionibacterium acnes HL087PA3]
 gi|327457665|gb|EGF04320.1| ribonuclease HII [Propionibacterium acnes HL083PA2]
 gi|328755121|gb|EGF68737.1| ribonuclease HII [Propionibacterium acnes HL087PA1]
 gi|328758100|gb|EGF71716.1| ribonuclease HII [Propionibacterium acnes HL025PA2]
 gi|332675850|gb|AEE72666.1| ribonuclease HII [Propionibacterium acnes 266]
          Length = 204

 Score =  217 bits (554), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELY 72
           E  +    + PVAG DE GRGA AGP+V AA+ILD        G+ DSK +S  KRE L+
Sbjct: 4   ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 63

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   A+ +S         D+  + +A +  +  AV  L V P   L DG  + + L  
Sbjct: 64  NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 122

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               + KGDS+   +AAASI+AKV RDR+M     + P Y F  H GY TA HQ+ +KE 
Sbjct: 123 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 182

Query: 192 GPSCIHRLTFRPLRN 206
           GPS  HR+++  +R 
Sbjct: 183 GPSRQHRMSYANVRR 197


>gi|313831400|gb|EFS69114.1| ribonuclease HII [Propionibacterium acnes HL007PA1]
 gi|313835012|gb|EFS72726.1| ribonuclease HII [Propionibacterium acnes HL056PA1]
 gi|314974275|gb|EFT18371.1| ribonuclease HII [Propionibacterium acnes HL053PA1]
 gi|314976720|gb|EFT20815.1| ribonuclease HII [Propionibacterium acnes HL045PA1]
 gi|314984422|gb|EFT28514.1| ribonuclease HII [Propionibacterium acnes HL005PA1]
 gi|315081336|gb|EFT53312.1| ribonuclease HII [Propionibacterium acnes HL078PA1]
 gi|315095246|gb|EFT67222.1| ribonuclease HII [Propionibacterium acnes HL038PA1]
 gi|327328324|gb|EGE70086.1| ribonuclease HII [Propionibacterium acnes HL096PA2]
 gi|327444349|gb|EGE91003.1| ribonuclease HII [Propionibacterium acnes HL043PA2]
 gi|327445013|gb|EGE91667.1| ribonuclease HII [Propionibacterium acnes HL043PA1]
 gi|328760136|gb|EGF73714.1| ribonuclease HII [Propionibacterium acnes HL099PA1]
          Length = 204

 Score =  217 bits (554), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELY 72
           E  +    + PVAG DE GRGA AGP+V AA+ILD        G+ DSK +S  KRE L+
Sbjct: 4   ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 63

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   A+ +S         D+  + +A +  +  AV  L V P   L DG  + + L  
Sbjct: 64  NVIMDKALAVSWVGVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 122

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               + KGDS+   +AAASI+AKV RDR+M     + P Y F  H GY TA HQ+ +KE 
Sbjct: 123 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 182

Query: 192 GPSCIHRLTFRPLRN 206
           GPS  HR+++  +R 
Sbjct: 183 GPSRQHRMSYANVRR 197


>gi|257066780|ref|YP_003153036.1| Ribonuclease H [Anaerococcus prevotii DSM 20548]
 gi|256798660|gb|ACV29315.1| Ribonuclease H [Anaerococcus prevotii DSM 20548]
          Length = 209

 Score =  217 bits (554), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 76/182 (41%), Positives = 108/182 (59%), Gaps = 3/182 (1%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           ++   +AGIDEVGRG LAGPVV  A+I+  ++   G+ DSKK++ KK   L EKI   AI
Sbjct: 16  EDYELIAGIDEVGRGPLAGPVVTCAVIMKRDSNIGGVTDSKKLTRKKMLSLKEKILDDAI 75

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             +   A+   ID+ NI  AT  A+  A+  L++ P   LID   I  D+P     ++KG
Sbjct: 76  DFAYGYANPSLIDELNIKNATHKAMEDALNKLKIRPEIVLIDAERINTDIP--QMNIVKG 133

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D     I+ ASI+AKV RD +M    K YP Y F++++GY T KH + +++ G + IHR 
Sbjct: 134 DLNEYVISCASILAKVRRDDIMINFSKIYPGYSFETNMGYGTKKHYEGLEKYGETPIHRQ 193

Query: 200 TF 201
           TF
Sbjct: 194 TF 195


>gi|327404332|ref|YP_004345170.1| RNase HII [Fluviicola taffensis DSM 16823]
 gi|327319840|gb|AEA44332.1| RNase HII [Fluviicola taffensis DSM 16823]
          Length = 202

 Score =  217 bits (554), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 70/179 (39%), Positives = 91/179 (50%), Gaps = 1/179 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAGPVV A++IL        +NDSK++S K R  L   I   A+  S+  
Sbjct: 14  AGCDEAGRGCLAGPVVCASVILPKGFSHPLLNDSKQLSEKSRNLLRPIIEQEALAFSVQF 73

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
                I   NI KA+L  ++ A   L++ P   LIDG          + A IKGD    S
Sbjct: 74  LQPDEIVVLNILKASLTGMHRAAMALKIRPELLLIDGNKTLLSNEIPSIAFIKGDGKYKS 133

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           IAAASI+AK  RD  M   H+ +  Y +  + GYPT  H++ I+  G    HR  F  L
Sbjct: 134 IAAASILAKTYRDEYMEKLHEDFTHYDWKINKGYPTKAHRKAIEIHGACIHHRPGFNLL 192


>gi|169827106|ref|YP_001697264.1| ribonuclease HII [Lysinibacillus sphaericus C3-41]
 gi|168991594|gb|ACA39134.1| Ribonuclease HII [Lysinibacillus sphaericus C3-41]
          Length = 253

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 80/185 (43%), Positives = 114/185 (61%), Gaps = 4/185 (2%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-IS 82
            +AG+DE GRG LAGPVV AA+IL  N+    G+NDSK++S  KR      I   AI   
Sbjct: 69  LIAGVDEAGRGPLAGPVVTAAVILPTNSEALVGLNDSKQLSKDKRNAFAALIKKHAISYF 128

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I   S Q ID+ NI++AT  ++  +VE+L   P   L+D  ++P  +P    ++IKGD+ 
Sbjct: 129 IHFQSAQQIDELNIYEATKQSMKASVESLSRKPDYVLVDAMTLPMAIP--QDSIIKGDAK 186

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           SL+IAAASI+AK  RD  M    K +P YGF  H GY T +H + ++E GP+  HR +F 
Sbjct: 187 SLAIAAASILAKTARDDYMEQLDKDFPMYGFAQHAGYGTKQHLKALEEYGPTIHHRKSFE 246

Query: 203 PLRNL 207
           P++++
Sbjct: 247 PIKSM 251


>gi|221633032|ref|YP_002522257.1| ribonuclease HII [Thermomicrobium roseum DSM 5159]
 gi|221155904|gb|ACM05031.1| ribonuclease HII [Thermomicrobium roseum DSM 5159]
          Length = 219

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 80/196 (40%), Positives = 117/196 (59%), Gaps = 3/196 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHK 66
           ERP FELE  + +     VAG+DEVGRGALAGPVV AA I +P+  +P  + DSK+++  
Sbjct: 16  ERPTFELEQALWQAGNRWVAGVDEVGRGALAGPVVAAACIFEPSTELPDQLRDSKRLTDP 75

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R  L + +   ++  +I +ASH+ +D+  I +AT  A+  A++ L  +    L DG  +
Sbjct: 76  QRRALADWVRQYSLRWAIGAASHREVDRLGIVRATALAMLRALQRLGPV-DHVLYDGLPL 134

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
            E       AV+ GD    SIAAASI+AKV RD LM     +YP YG++ + GY T  H+
Sbjct: 135 TEFERLPGTAVVHGDMRCASIAAASILAKVIRDDLMARLAVRYPGYGWEENAGYGTPSHR 194

Query: 186 QVIKEKGPSCIHRLTF 201
           + I+E G +  HR +F
Sbjct: 195 RAIRELGSTPFHRRSF 210


>gi|312112873|ref|YP_004010469.1| ribonuclease H [Rhodomicrobium vannielii ATCC 17100]
 gi|311218002|gb|ADP69370.1| Ribonuclease H [Rhodomicrobium vannielii ATCC 17100]
          Length = 239

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 82/197 (41%), Positives = 121/197 (61%), Gaps = 2/197 (1%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           ++     +  ++ K    +AG+DE GRG  AGPVV AA+I      P G+NDSKK++  +
Sbjct: 35  QKLTRRPDLALQRKYGGLIAGVDEAGRGPWAGPVVAAAVIFH-GKPPAGVNDSKKLAPAE 93

Query: 68  REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           RE L+ KI ++A + I  A  + ID+ NI+ AT  A+  A+  L   P +ALIDG   P+
Sbjct: 94  RENLFSKIFAAAHVGIGIAPVELIDEINIYHATHRAMCDAISALAFAPNAALIDGNRCPK 153

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            L   + A++ GD++S+SIAAASIIAKVTRDR+M      +P Y ++ + GY TA H   
Sbjct: 154 -LDIPSEALVSGDALSISIAAASIIAKVTRDRMMTELASTFPPYRWERNKGYGTADHASA 212

Query: 188 IKEKGPSCIHRLTFRPL 204
           ++E G +  HR +FRP+
Sbjct: 213 LREYGVTLHHRRSFRPV 229


>gi|229824250|ref|ZP_04450319.1| hypothetical protein GCWU000282_01554 [Catonella morbi ATCC 51271]
 gi|229786604|gb|EEP22718.1| hypothetical protein GCWU000282_01554 [Catonella morbi ATCC 51271]
          Length = 262

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 83/202 (41%), Positives = 121/202 (59%), Gaps = 5/202 (2%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHK 66
           +     E    E     +AG+DEVGRG LAGPVVVAA++L  +      G+ DSK++SH 
Sbjct: 57  QKRLIHEMAAYEAGYQVIAGLDEVGRGPLAGPVVVAAVVLPRDCQHLLVGVTDSKQLSHA 116

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           KR E   +I   A+ + I +     ID+ NI++AT   +  AVE L+V P   L+D  +I
Sbjct: 117 KRLEFARQIREVALDLKIVAIPPAIIDRENIYQATRQGMKAAVEALRVKPDYLLLDAITI 176

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
             DLP    +++KGD  SLSIAAASI+AKV RD LM    + YP++GF+ ++GY T +H 
Sbjct: 177 DSDLP--QESLVKGDQRSLSIAAASIVAKVYRDELMVQYSQTYPEFGFERNMGYGTKEHL 234

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
             +   G + IHR +F P++++
Sbjct: 235 VALDRVGYTPIHRRSFEPVKSM 256


>gi|294675016|ref|YP_003575632.1| ribonuclease HII [Prevotella ruminicola 23]
 gi|294473926|gb|ADE83315.1| ribonuclease HII [Prevotella ruminicola 23]
          Length = 209

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 71/185 (38%), Positives = 105/185 (56%), Gaps = 7/185 (3%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG LAG V  AA+IL        +NDSK++S KKR +L E I   A+  ++  
Sbjct: 13  AGCDEAGRGCLAGSVYAAAVILPEGYQNELLNDSKQLSEKKRYQLREMIERDAVAWAVGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE------DLPCQAFAVIKG 139
            + + IDK NI  A++ A++ A++ L+V P + ++DG                   ++KG
Sbjct: 73  VTPEEIDKINILNASILAMHRALDQLKVRPEAIIVDGNRFKPYKEPANGETLPHTTIVKG 132

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D   L+IAAASI+AK  RD  M    ++YP Y + S+ GYPT KH++ IK+ G +  HR 
Sbjct: 133 DGKYLAIAAASILAKTYRDDYMNQLAEEYPQYDWRSNKGYPTKKHREAIKQHGITPYHRK 192

Query: 200 TFRPL 204
           ++  L
Sbjct: 193 SYNLL 197


>gi|306845020|ref|ZP_07477601.1| ribonuclease HII [Brucella sp. BO1]
 gi|306274652|gb|EFM56441.1| ribonuclease HII [Brucella sp. BO1]
          Length = 194

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 93/188 (49%), Positives = 131/188 (69%), Gaps = 2/188 (1%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
           ++ +  +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++  +RE LYE I + A
Sbjct: 2   KRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTAARREALYEIILAKA 61

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           I +S++S S + ID  +I KA L+A+  AV  L + P  AL+DGR +P  LPC   A++K
Sbjct: 62  ITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRDVPPGLPCPGSALVK 121

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC-IH 197
           GD  S+SIAAASI+AKVTRDR+M  A   +P YG + H GY T KH+  I+ +GP   +H
Sbjct: 122 GDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYGTQKHRAAIESEGPVPGLH 181

Query: 198 RLTFRPLR 205
           R TF P++
Sbjct: 182 RYTFAPIK 189


>gi|218288272|ref|ZP_03492571.1| Ribonuclease H [Alicyclobacillus acidocaldarius LAA1]
 gi|218241631|gb|EED08804.1| Ribonuclease H [Alicyclobacillus acidocaldarius LAA1]
          Length = 207

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/198 (38%), Positives = 111/198 (56%), Gaps = 8/198 (4%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHK 66
            + L+  +        AG+DEVGRG +AGPVV A+++L            + DSK++   
Sbjct: 7   RYRLDLAL--SGGCRTAGVDEVGRGCIAGPVVAASVVLPLELETYEELKDVMDSKQLKSD 64

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
            RE L ++I + A+ + I  AS + ID+ NI +AT  A+  +++ L +    AL+DG   
Sbjct: 65  VRERLADRIRAKALAVGIGMASPEEIDRLNILQATQLAMKRSLDALDIPVDLALVDGNRA 124

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
                     V+ GD+ SL IAAAS+IAKV RDRLM    + +P YGF  HVGY T  H 
Sbjct: 125 FRHR-VPVLPVVDGDARSLPIAAASVIAKVFRDRLMAKLDEGFPGYGFSEHVGYGTRAHL 183

Query: 186 QVIKEKGPSCIHRLTFRP 203
           + ++  GPS +HRL+F P
Sbjct: 184 EALRRLGPSVVHRLSFAP 201


>gi|78185903|ref|YP_373946.1| ribonuclease H [Chlorobium luteolum DSM 273]
 gi|97189134|sp|Q3B6X8|RNH2_PELLD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|78165805|gb|ABB22903.1| RNase HII [Chlorobium luteolum DSM 273]
          Length = 208

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 79/200 (39%), Positives = 113/200 (56%), Gaps = 8/200 (4%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-----INDSKKISHKKRE 69
           E ++       V GIDE GRG LAGPVV AA++      P       +NDSKK++   R 
Sbjct: 9   EYLLWND-FLRVCGIDEAGRGPLAGPVVAAAVVFPRWFSPDEGILRRLNDSKKLTPSLRR 67

Query: 70  ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           EL   I   A   ++ +  H+ ID+ NI +AT+ A+  A E+L   P   LIDG     +
Sbjct: 68  ELAPAIREEAECWAVEAVDHETIDRINILRATMLAMNRAAESLPRQPDLLLIDGNRFTPN 127

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           +P     ++ GD++  SIAAAS++AK  RDR+M    ++YP+YGF+ + GY T +H + I
Sbjct: 128 IPVPYQTIVGGDALVFSIAAASVLAKTERDRMMEEYAERYPEYGFERNAGYGTREHVEAI 187

Query: 189 KEKGPSCIHRLTFRPLRNLS 208
           +  G S IHR +FR LR L 
Sbjct: 188 RRHGRSPIHRTSFR-LRQLG 206


>gi|289449974|ref|YP_003475451.1| ribonuclease HII [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184521|gb|ADC90946.1| ribonuclease HII [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 228

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 80/191 (41%), Positives = 111/191 (58%), Gaps = 2/191 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            + E    ++    +AG DE GRG +AGP+  AA+++DP    +G+NDSKK+S K+REEL
Sbjct: 35  LKFEEQAAQQGFTCIAGTDEAGRGPVAGPIFAAAVVIDPRRPLYGVNDSKKLSPKRREEL 94

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A   SI+  + + ID+  I  A    +  AV  + +     L+D   + +D  
Sbjct: 95  FNIICERAAAYSIAMVTAKVIDQIGIGPANDLVLKQAVGRMSIKADYVLVDYFKL-KDYA 153

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               A+ KGDS+S SIAAASI+AKV+RDR M    K YP YGF +H GY TA H+Q IKE
Sbjct: 154 IPYLAITKGDSLSASIAAASILAKVSRDRYMVQQDKIYPQYGFAAHKGYGTAAHRQAIKE 213

Query: 191 KGPSCIHRLTF 201
            G    HR +F
Sbjct: 214 YGLCPEHRRSF 224


>gi|119717477|ref|YP_924442.1| ribonuclease HII [Nocardioides sp. JS614]
 gi|189043632|sp|A1SLS0|RNH2_NOCSJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|119538138|gb|ABL82755.1| Ribonuclease H [Nocardioides sp. JS614]
          Length = 240

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/198 (38%), Positives = 108/198 (54%), Gaps = 4/198 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69
           +  E  +R   + P+AG+DE GRGA AGP+V  A IL P    I  G+ DSK ++ + RE
Sbjct: 17  YGYERALRRHGIEPIAGVDEAGRGACAGPLVAGAAILPPGKAGIVPGLADSKLLTERARE 76

Query: 70  ELYEKITSSAIISISSAS-HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
             YE+I   A+        H+  D+  +H A ++A+  AV  L + P   L DG  + + 
Sbjct: 77  RCYEQIVRRAVSWSVVVVSHEECDRLGMHVANVEALRRAVALLDLPPAYVLTDGFPV-DG 135

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L     AV KGD ++  I+AAS++AKVTRDR+M      +P Y F +H GY T  H   +
Sbjct: 136 LGVPGLAVWKGDRVAACISAASVLAKVTRDRIMTELDASWPAYDFKTHKGYITEVHSAAL 195

Query: 189 KEKGPSCIHRLTFRPLRN 206
              GPS IHR+ F  +R 
Sbjct: 196 TAHGPSPIHRMRFVNVRR 213


>gi|325474109|gb|EGC77297.1| ribonuclease HII [Treponema denticola F0402]
          Length = 198

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 77/198 (38%), Positives = 108/198 (54%), Gaps = 17/198 (8%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS--SAIISI 83
           + GIDE GRG LAGPV  AA+IL        + DSKK++ KKREE+ + I +  + + SI
Sbjct: 2   LCGIDEAGRGPLAGPVTAAAVILPSRFDFSILKDSKKLTEKKREEVRKTIYADPNVLWSI 61

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENL-------------QVIPRSALIDGRSIPEDLP 130
             AS+  ID+ NI +AT  A+  A E L             + I    ++DG  IP    
Sbjct: 62  GWASNYEIDEINILQATFLAMERAYEGLYLKLQEFCKLNNDKFIEPDIIVDGNFIPNIKN 121

Query: 131 CQAF-AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           C +  A++K D     + AASI+AK  RDR+M      YP+YG++ H GY T KH + I+
Sbjct: 122 CSSIKALVKADDSVYEVMAASILAKTARDRMMIRYSWLYPEYGYEKHKGYGTKKHIEAIR 181

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G S I R +F  ++NL
Sbjct: 182 FNGYSPIQRRSF-FVKNL 198


>gi|78189946|ref|YP_380284.1| ribonuclease HII [Chlorobium chlorochromatii CaD3]
 gi|97182370|sp|Q3AP34|RNH2_CHLCH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|78172145|gb|ABB29241.1| RNase HII [Chlorobium chlorochromatii CaD3]
          Length = 206

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 85/201 (42%), Positives = 119/201 (59%), Gaps = 8/201 (3%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-----INDSKKISHKKR 68
            E  +  ++   + GIDEVGRG LAGPVV AA++      P       +NDSKK+S K+R
Sbjct: 5   YEEPLW-QHYEFICGIDEVGRGPLAGPVVAAAVVFPRWFQPTEALLTLLNDSKKLSAKER 63

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E L   I + A+  +++   H  ID+ NI +AT+ A+ +AV+ L +IP   L+DG     
Sbjct: 64  ESLVPAIKAQALHWALAEVQHNVIDEVNILQATMLAMNNAVKALPIIPSLLLVDGNRFTT 123

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           DL      ++KGDS   SIAAAS++AKV RD LM +    YP YGF+ H GYPT+ H + 
Sbjct: 124 DLAIPYKTIVKGDSHVFSIAAASVLAKVHRDALMCVYATHYPHYGFERHAGYPTSAHIEA 183

Query: 188 IKEKGPSCIHRLTFRPLRNLS 208
           I++ G   IHR +F+ LR L 
Sbjct: 184 IRQHGRCPIHRQSFK-LRQLG 203


>gi|163796461|ref|ZP_02190421.1| Ribonuclease HII [alpha proteobacterium BAL199]
 gi|159178311|gb|EDP62855.1| Ribonuclease HII [alpha proteobacterium BAL199]
          Length = 222

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 80/213 (37%), Positives = 117/213 (54%), Gaps = 10/213 (4%)

Query: 2   FCNSIPE-RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFG 56
           F  SIP+ RP  +LE          V G+DEVGRG  AGPVV  A +LD    P ++   
Sbjct: 3   FMPSIPKTRPTDDLERAAGALEGALVIGVDEVGRGPWAGPVVAGAAVLDLVAMPTHVAAL 62

Query: 57  INDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL----Q 112
           I DSK +S  +R +     T  A I++  A  + ID  NI +A+L A+  AV+ L     
Sbjct: 63  IADSKALSAPRRADALAAFTPYAAIALGRAEVEEIDAVNILQASLLAMRRAVDALLATLA 122

Query: 113 VIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172
             P   L+DG  +P   P  + A++KGD+  LSI+ A+I AK+ RD  M    +++P YG
Sbjct: 123 GPPALILVDGNRLPH-WPHPSRAIVKGDASCLSISVAAIAAKLARDAEMAALAEQHPGYG 181

Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           ++ + GY T +HQ  ++  GP+  HR +F P+R
Sbjct: 182 WERNAGYGTPEHQVALRRLGPTIHHRRSFAPVR 214


>gi|169630303|ref|YP_001703952.1| ribonuclease HII [Mycobacterium abscessus ATCC 19977]
 gi|238688907|sp|B1MDH9|RNH2_MYCA9 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|169242270|emb|CAM63298.1| Ribonuclease HII (RNase HII) [Mycobacterium abscessus]
          Length = 234

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 79/196 (40%), Positives = 111/196 (56%), Gaps = 4/196 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREEL 71
           LE  +    + PVAG+DE GRGA AGP+V+AA +L  +       +NDSKK++ K RE L
Sbjct: 20  LELTLDRVGLGPVAGVDEAGRGACAGPLVIAACVLGSNQRKSLAALNDSKKLTEKMRETL 79

Query: 72  YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A    + S     +D+  +H A ++ +  AV  L V P   L DG  +P  LP
Sbjct: 80  FPLICRYAEAYHVVSVPADEVDRIGVHVANIEGMRRAVAGLGVKPGYVLTDGFRVP-GLP 138

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD+ +  IAAAS++AKV+RDR+M      +P YGF  H GY TA H + ++ 
Sbjct: 139 VPSLPVIGGDASAACIAAASVLAKVSRDRVMVNMDSDHPGYGFAVHKGYSTAVHTEALRR 198

Query: 191 KGPSCIHRLTFRPLRN 206
            GPS  HR +F  +RN
Sbjct: 199 LGPSAQHRQSFVNVRN 214


>gi|75676782|ref|YP_319203.1| ribonuclease HII/HIII [Nitrobacter winogradskyi Nb-255]
 gi|97189098|sp|Q3SPE0|RNH2_NITWN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|74421652|gb|ABA05851.1| RNase HII [Nitrobacter winogradskyi Nb-255]
          Length = 258

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 95/204 (46%), Positives = 130/204 (63%), Gaps = 1/204 (0%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           +   +I   P F  E  + E  +WPVAG DEVGRG LAGPVV AA++LDPN+IP GI+DS
Sbjct: 25  LKAGTINVAPSFMRERDLMECGVWPVAGCDEVGRGPLAGPVVAAAVVLDPNHIPKGIDDS 84

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K+++  +REEL+E+I ++A  +++ A  + ID+ NI +A+L A+  AV  L   P+   +
Sbjct: 85  KRLTAARREELFEEIVATASFAVACAPIERIDRDNILRASLWALARAVHALPDTPKHVFV 144

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DGR    D+ C    VI GD + LSIAAASI+AKVTRDRLM    +  P YGF++H GY 
Sbjct: 145 DGRD-RIDIACACEPVIGGDGLVLSIAAASIVAKVTRDRLMCKLARDCPGYGFETHKGYA 203

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPL 204
              H + +   GPS  HR  F P+
Sbjct: 204 VPGHLEALGRLGPSSHHRSFFAPV 227


>gi|328949830|ref|YP_004367165.1| Ribonuclease H [Marinithermus hydrothermalis DSM 14884]
 gi|328450154|gb|AEB11055.1| Ribonuclease H [Marinithermus hydrothermalis DSM 14884]
          Length = 199

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/192 (40%), Positives = 107/192 (55%), Gaps = 6/192 (3%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
           LE  +    +  V G+DE GRGALAGP+VV A+IL P   PF   DSK    K RE L  
Sbjct: 4   LELPLWRDGL-VVCGVDEAGRGALAGPIVVGAVILPPGPHPF--RDSKACPPKTREALLA 60

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           ++  +A+  ++  A    +D   + KAT  A + A+  L+  P   + D   +  DLP  
Sbjct: 61  RLERTALAYAVGVAEAGEVDALGVLKATHLAAHRALAALEARPDHLITDYLFLETDLPL- 119

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             AV K +  S+++AAASI+AKVTRDR+MR   + YP YGF  H GY T  H + +   G
Sbjct: 120 -TAVPKAEEKSVTVAAASILAKVTRDRIMRELDRAYPGYGFAQHKGYGTRAHLEALARLG 178

Query: 193 PSCIHRLTFRPL 204
           PS +HR  F P+
Sbjct: 179 PSPVHRRRFAPV 190


>gi|126654070|ref|ZP_01725896.1| ribonuclease HII [Bacillus sp. B14905]
 gi|126589450|gb|EAZ83597.1| ribonuclease HII [Bacillus sp. B14905]
          Length = 253

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 79/185 (42%), Positives = 113/185 (61%), Gaps = 4/185 (2%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-IS 82
            +AG+DE GRG LAGPVV AA+IL  N+    G+NDSK++S  KR      I   AI   
Sbjct: 69  LIAGVDEAGRGPLAGPVVTAAVILPTNSEALVGLNDSKQLSKDKRNAFAALIKEHAISYF 128

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I     Q ID+ NI++AT  ++  +VE+L   P   L+D  ++P  +P    ++IKGD+ 
Sbjct: 129 IHFQPAQQIDELNIYEATKQSMKASVESLSRKPDYVLVDAMTLPMAIP--QDSIIKGDAK 186

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           SL+IAAASI+AK  RD  M    K +P YGF  H GY T +H + ++E GP+  HR +F 
Sbjct: 187 SLAIAAASILAKTARDDYMEQLDKDFPMYGFAQHAGYGTKQHLKALEEYGPTIHHRKSFE 246

Query: 203 PLRNL 207
           P++++
Sbjct: 247 PVKSM 251


>gi|327441071|dbj|BAK17436.1| ribonuclease HII [Solibacillus silvestris StLB046]
          Length = 257

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 77/198 (38%), Positives = 118/198 (59%), Gaps = 4/198 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREE 70
            + +A         +AG DE GRG LAGPVV AA+IL  +     G+NDSK++S +KR +
Sbjct: 57  LQFDASYLPYEHAYIAGTDEAGRGPLAGPVVTAAVILPNHCQELLGVNDSKQLSKEKRNQ 116

Query: 71  LYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
             E+I   A+  ++   S + ID+ NI++AT  ++  ++E L+V P   L D  ++   +
Sbjct: 117 FAERIKKHALYYAVHFQSAEEIDRLNIYEATRQSMLKSIEALEVTPNYILADAMTLSTSI 176

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P    ++IKGD+ SL+IAAASI+AK  RD  M     ++P YGF  H GY T +H + I 
Sbjct: 177 P--QASIIKGDARSLAIAAASILAKTARDDYMEKLDLEFPQYGFAQHAGYGTKQHLEAIA 234

Query: 190 EKGPSCIHRLTFRPLRNL 207
           + GP+  HR TF P++++
Sbjct: 235 QYGPTIHHRKTFEPIKSI 252


>gi|284992383|ref|YP_003410937.1| Ribonuclease H [Geodermatophilus obscurus DSM 43160]
 gi|284065628|gb|ADB76566.1| Ribonuclease H [Geodermatophilus obscurus DSM 43160]
          Length = 257

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/205 (36%), Positives = 109/205 (53%), Gaps = 6/205 (2%)

Query: 5   SIPERPH--FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDS 60
           S+ +RP   +++E  +  +    VAG DE GRGA AGP+V AA +L         G+ DS
Sbjct: 20  SVDDRPDALWDMERSLHRRGFPAVAGADEAGRGACAGPLVAAACVLPAGRRGRVPGLADS 79

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           K ++   RE +YE++   A+  S+       +D   +H   ++A+  AV  L       L
Sbjct: 80  KLLTVAARERVYEEVVDRAVAWSVVLLPVADLDARGMHVTNIEALRRAVWALDPGADYVL 139

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
            DG  +P  L     AV KGD I+  +AAAS++AKVTRDR+M   H+++P+Y F  H GY
Sbjct: 140 TDGFPVP-GLARPTLAVWKGDRIAACVAAASVLAKVTRDRIMLDLHERWPEYDFAVHKGY 198

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPL 204
            TA H   ++  GP   HR  F  +
Sbjct: 199 STAAHDAALQRYGPCPEHRKRFVNV 223


>gi|304383864|ref|ZP_07366321.1| ribonuclease HII [Prevotella marshii DSM 16973]
 gi|304334942|gb|EFM01215.1| ribonuclease HII [Prevotella marshii DSM 16973]
          Length = 198

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 75/177 (42%), Positives = 110/177 (62%), Gaps = 1/177 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
           AG DE GRG+LAG V  AA+IL P+     INDSKK++ ++R  L E I + AI  +I  
Sbjct: 13  AGCDEAGRGSLAGSVYAAAVILPPDYRNDAINDSKKLTPRQRYALREVIQTDAIAWAIGI 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           A+ + ID+ NI  A++ A++ A++ L + P + +IDG             ++KGD+  LS
Sbjct: 73  ATAEEIDRINILNASILAMHRALDGLHLRPEAVIIDGNRFQPYRNLPCQTIVKGDAKYLS 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           IAAA+I+AK  RD  M    ++YP Y + S+ GYPT +H+Q IK+ G S +HR +FR
Sbjct: 133 IAAAAILAKTYRDDYMDALAEEYPVYEWHSNKGYPTKRHRQAIKDYGASPLHRQSFR 189


>gi|325282798|ref|YP_004255339.1| Ribonuclease H [Deinococcus proteolyticus MRP]
 gi|324314607|gb|ADY25722.1| Ribonuclease H [Deinococcus proteolyticus MRP]
          Length = 215

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 73/196 (37%), Positives = 108/196 (55%), Gaps = 3/196 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P + LE     +  + VAG+DE GRGA AGPV VAA+IL          DSK ++ ++RE
Sbjct: 11  PDWSLERQHWVRGYFRVAGVDEAGRGAWAGPVTVAAVILPNTGAELPFADSKTLTARQRE 70

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            L E++   A+  ++  A    I++ NI  AT  A   A+  L   P++ + D   +   
Sbjct: 71  MLAEEVRRVAVAWAVEYAWPDEIERLNILGATHAAAARALAALDPEPQALVTDYLRLRTP 130

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LP    A  + D++S S+AAAS++AK  RD LM     +YP YGF +H GY   +H+  +
Sbjct: 131 LPI--LAPPRADALSYSVAAASLLAKTERDALMTRLDAQYPGYGFAAHKGYGAPQHRAAL 188

Query: 189 KEKGPSCIHRLTFRPL 204
            E G S +HR +FRP+
Sbjct: 189 DELGVSAVHRRSFRPI 204


>gi|160915179|ref|ZP_02077392.1| hypothetical protein EUBDOL_01187 [Eubacterium dolichum DSM 3991]
 gi|158432978|gb|EDP11267.1| hypothetical protein EUBDOL_01187 [Eubacterium dolichum DSM 3991]
          Length = 208

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 75/197 (38%), Positives = 107/197 (54%), Gaps = 4/197 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E    ++    + GIDE GRG +AGP+VVAA+    +     I DSKK+S KKRE L+
Sbjct: 6   EYEKAWYKEGKQAIVGIDEAGRGPIAGPLVVAAVSFPDDYDDDEIYDSKKLSEKKRELLF 65

Query: 73  EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            KI   A    I     + ID  NI++AT +A+    +  Q+I    L D   +P     
Sbjct: 66  RKIIKEAREYHILIVDTKTIDTENIYRATQNAMQRLCDEFQMI-DGVLTDAMPLPFC-KQ 123

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              +++KGD  S+SIAAASI+AKVTRD +M     +YP YGF  H GYPT  H + +   
Sbjct: 124 DCISLVKGDQKSVSIAAASILAKVTRDHIMMAYDLQYPQYGFAKHKGYPTKVHLEALHRY 183

Query: 192 GPSC-IHRLTFRPLRNL 207
           G    ++R ++ P+  +
Sbjct: 184 GVIDGLYRHSYGPVAKM 200


>gi|269125835|ref|YP_003299205.1| Ribonuclease H [Thermomonospora curvata DSM 43183]
 gi|268310793|gb|ACY97167.1| Ribonuclease H [Thermomonospora curvata DSM 43183]
          Length = 250

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 73/211 (34%), Positives = 113/211 (53%), Gaps = 10/211 (4%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP---------FGI 57
           P R   E+E  +RE     +AG+DEVGRGA AGPVVV A I  P   P           +
Sbjct: 18  PRRAGDEIERRLREAGAVRIAGVDEVGRGAWAGPVVVCAAIAGPGAPPSLPGRGGGTVHL 77

Query: 58  NDSKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116
            DSK ++  +RE   E + +     ++ +A    ID+  + +A   A   A++ L   P 
Sbjct: 78  TDSKLLTRAQREAFAEILPAWLEAHALGAAEPAEIDRVGMTEALRRAAVRALQALPHRPD 137

Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
           + ++DG+      P +    +  D  S+S+AAAS++AKV RDRLM    +++P YGF   
Sbjct: 138 AVILDGKHDVPGAPWRVHCQVGADRRSVSVAAASVLAKVHRDRLMARLEEEFPGYGFADS 197

Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
            GYP+  H++ ++E GP+  HRL++  L +L
Sbjct: 198 AGYPSPAHRRALQEHGPTPHHRLSWSYLDDL 228


>gi|320334228|ref|YP_004170939.1| Ribonuclease H [Deinococcus maricopensis DSM 21211]
 gi|319755517|gb|ADV67274.1| Ribonuclease H [Deinococcus maricopensis DSM 21211]
          Length = 210

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 72/200 (36%), Positives = 107/200 (53%), Gaps = 3/200 (1%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F LE     +  + VAG+DE GRGA AGP+ VAA+IL          DSK +S  +RE
Sbjct: 3   PDFSLERQHWARGFFRVAGVDEAGRGAWAGPLTVAAVILPATPTDLPFRDSKTLSAAQRE 62

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            L  ++   A+  ++  A    ID+ N+  AT  A   A+  L+V P++ + D   +  D
Sbjct: 63  ALAAEVRRVAVAWAVEFAEADEIDRLNVLGATHAAALRALRRLEVAPQALITDYLRLRTD 122

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LP    A  + D++S S+AAAS++AK  RDR M      +P YGF +H GY  + H+  +
Sbjct: 123 LPL--LAPPRADALSYSVAAASLLAKTERDRRMVELDALHPGYGFAAHKGYGVSAHRAAL 180

Query: 189 KEKGPSCIHRLTFRPLRNLS 208
              G S  HR +F P+  ++
Sbjct: 181 DRLGVSDEHRRSFGPVARVA 200


>gi|238796623|ref|ZP_04640130.1| Ribonuclease HII [Yersinia mollaretii ATCC 43969]
 gi|238719601|gb|EEQ11410.1| Ribonuclease HII [Yersinia mollaretii ATCC 43969]
          Length = 166

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 71/162 (43%), Positives = 97/162 (59%), Gaps = 2/162 (1%)

Query: 47  ILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIY 105
           ILDP     G+ DSKK+S K+R  LY++IT  A+  S+  A  + ID  NI  AT+ A+ 
Sbjct: 2   ILDPKRPIVGLADSKKLSEKRRLSLYDEITDKALSWSLGRAEPEEIDSLNILHATMLAMQ 61

Query: 106 HAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165
            AV  L + P   LIDG   P+ L   + AV+KGDS    I+AASI+AKVTRDR M    
Sbjct: 62  RAVAGLHITPDYVLIDGNRCPK-LAMPSLAVVKGDSRVAEISAASILAKVTRDREMTELD 120

Query: 166 KKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           + +P+YGF  H GYPTA H + +   G +  HR +F P++ +
Sbjct: 121 RDFPEYGFAQHKGYPTAVHLEKLYAFGATEHHRRSFGPVKRV 162


>gi|302831956|ref|XP_002947543.1| hypothetical protein VOLCADRAFT_87765 [Volvox carteri f.
           nagariensis]
 gi|300267407|gb|EFJ51591.1| hypothetical protein VOLCADRAFT_87765 [Volvox carteri f.
           nagariensis]
          Length = 678

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 84/247 (34%), Positives = 121/247 (48%), Gaps = 48/247 (19%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGAL----------------AGPVVVAAIILDPNNI 53
           P  ++E  +R +    V G DE GRG L                 G + V A    P   
Sbjct: 226 PTQDMETQLRAQGYLAVGGADEAGRGPLAGPVVAAVVVLPPRSDPGLMGVGAEGDAPWQP 285

Query: 54  PFGINDSKKISHKKREELYEKITS--SAIISISSASHQYIDKHNIHKATLDAIYH-AVEN 110
           P G+NDSK +S ++RE +YE++T+      ++S   H+ ID+ NI +A L A+   AV+ 
Sbjct: 286 PPGLNDSKAMSEEEREAVYEQLTTDPRVKWAVSVVEHEEIDRINILQAALGAMRESAVKL 345

Query: 111 LQVIP-----------------------------RSALIDGRSIPEDLPCQAFAVIKGDS 141
           LQ                                   L+DG  +P+DLP    AV+KGD+
Sbjct: 346 LQQKQQQGQQQQQQQDAGSAAADPPSAPPPSPALDFLLVDGNRLPKDLPVPGRAVVKGDA 405

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
               IAAAS IAKVTRDRLM    ++YP YGF  H GY    H + I++ GPS +HR +F
Sbjct: 406 TVSCIAAASCIAKVTRDRLMMKLDEQYPQYGFAQHKGYGVPAHMEAIRKYGPSAVHRRSF 465

Query: 202 RPLRNLS 208
            P+++++
Sbjct: 466 EPVKSMT 472


>gi|319788756|ref|YP_004090071.1| Ribonuclease H [Ruminococcus albus 7]
 gi|315450623|gb|ADU24185.1| Ribonuclease H [Ruminococcus albus 7]
          Length = 204

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 83/185 (44%), Positives = 114/185 (61%), Gaps = 2/185 (1%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77
           +  +    V G DE GRG LAG V  AA++ D + +  GINDSKK++ KKRE+L+++I  
Sbjct: 9   IYREKYEVVCGCDEAGRGPLAGDVFAAAVVFDKDTVIEGINDSKKLTAKKREKLFDEIIE 68

Query: 78  SA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136
            A   SI  A+   I+  NI    + A+  +VE +++ P   LIDG   P DL C A AV
Sbjct: 69  KAQDFSIQCATVAEIEDINILNCAMLAMKRSVEAMKIKPNVCLIDGNKTP-DLECDAIAV 127

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           +KGD+ S +IAAASI+AKV RDR M    +KYP++ F+ H GY T  H Q+I + G S I
Sbjct: 128 VKGDAQSQAIAAASILAKVARDRYMLQMAEKYPEWQFEKHKGYGTKLHYQMIDKYGESPI 187

Query: 197 HRLTF 201
           HR +F
Sbjct: 188 HRPSF 192


>gi|119952851|ref|YP_945060.1| ribonuclease HII [Borrelia turicatae 91E135]
 gi|119861622|gb|AAX17390.1| ribonuclease HII [Borrelia turicatae 91E135]
          Length = 182

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 77/180 (42%), Positives = 108/180 (60%), Gaps = 1/180 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAIISIS 84
           + GIDEVGRG + GPV+ AA+I   N      ++DSKK++  KRE L   I  ++  + +
Sbjct: 3   ICGIDEVGRGCIFGPVLSAAVIFKGNPKFLNALDDSKKLNKSKREYLSSLILENSYYAFA 62

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
              ++ IDK NIH A+L A+  A E L +     L+DG+ IP+    +  A+IKGDSI  
Sbjct: 63  EVPNEIIDKINIHHASLLAMQIAYEKLNIECNLVLVDGKFIPKIKAKKIQAIIKGDSIIN 122

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I AASIIAKV RD+LM    K YP Y    + GYPT +H+  IK+ G S +HR +F+ +
Sbjct: 123 EIKAASIIAKVQRDKLMDEYDKIYPLYALKKNKGYPTKEHKDAIKKYGISRLHRRSFQLI 182


>gi|55980167|ref|YP_143464.1| ribonuclease HII [Thermus thermophilus HB8]
 gi|73917835|sp|Q5SLU5|RNH2_THET8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|55771580|dbj|BAD70021.1| ribonuclease HII [Thermus thermophilus HB8]
          Length = 203

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 81/192 (42%), Positives = 111/192 (57%), Gaps = 6/192 (3%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
           LEA    K +  VAG+DE GRGA AGP+VV A++L P   PF   DSK +S K RE L E
Sbjct: 6   LEAPFWRKGL-LVAGLDEAGRGAWAGPIVVGAVVLPPGEYPF--RDSKLLSPKARERLAE 62

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           K+   A+  ++  A    +D+  + KATL A   A+ +L + P + + D   +P  LP  
Sbjct: 63  KVKEVALAFALGVAEAAEVDRLGVLKATLLAAERALLSLPLAPEALVTDYLPLPTPLPLL 122

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
           +    K D  S ++AAASI+AKV RDR+M    + YP YGF  H GY T +HQ+ +   G
Sbjct: 123 SPP--KADEKSPTVAAASILAKVHRDRIMDELDRLYPGYGFARHKGYGTQEHQEALLALG 180

Query: 193 PSCIHRLTFRPL 204
           PS +HR  F P+
Sbjct: 181 PSPVHRKRFAPV 192


>gi|326559868|gb|EGE10268.1| ribonuclease HII [Moraxella catarrhalis 7169]
 gi|326570127|gb|EGE20172.1| ribonuclease HII [Moraxella catarrhalis BC8]
 gi|326570865|gb|EGE20889.1| ribonuclease HII [Moraxella catarrhalis BC7]
 gi|326576404|gb|EGE26313.1| ribonuclease HII [Moraxella catarrhalis O35E]
          Length = 248

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 87/208 (41%), Positives = 115/208 (55%), Gaps = 25/208 (12%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDP------------NNIPFGINDSKKISHKKREELY 72
           P+ GIDEVGRGAL G + V A+IL              N     +NDSKK+S K+RE+L+
Sbjct: 28  PIVGIDEVGRGALFGNMTVGAVILPNELSGRFDEIDLTNTKISLLNDSKKLSEKRREQLF 87

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVE------NLQVIPRSALIDGRSI 125
           + IT  A+  +I       ID+ NI++AT+  +  A+E      NL     + LIDG  +
Sbjct: 88  DIITDLALDYAIVDVPSTIIDQINIYQATMLGMKIAIETIIIKNNLNEKNTTILIDGNQL 147

Query: 126 PE------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           P       +   Q +A+IKGD+   SIA ASI+AKV RDRLM    K YP+Y  D H GY
Sbjct: 148 PSMDGSLGEHFHQIYAMIKGDATHSSIACASILAKVHRDRLMIQHAKSYPEYLLDKHKGY 207

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
            TAKH+  I E G    HR +F P+R L
Sbjct: 208 LTAKHKAAILEYGILPEHRRSFSPIREL 235


>gi|189023629|ref|YP_001934397.1| ribonuclease HII [Brucella abortus S19]
 gi|189019201|gb|ACD71923.1| Ribonuclease HII/HIII [Brucella abortus S19]
          Length = 194

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 93/188 (49%), Positives = 131/188 (69%), Gaps = 2/188 (1%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
           ++ +  +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++  +RE LYE I + A
Sbjct: 2   KRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTAARREALYEIILTKA 61

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           I +S++S S + ID  +I KA L+A+  AV  L + P  AL+DGR +P  LPC   A++K
Sbjct: 62  ITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRDVPPGLPCPGSALVK 121

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC-IH 197
           GD  S+SIAAASI+AKVTRDR+M  A   +P YG + H GY T KH+  I+ +GP   +H
Sbjct: 122 GDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQKHRAAIESEGPVPGLH 181

Query: 198 RLTFRPLR 205
           R TF P++
Sbjct: 182 RYTFAPIK 189


>gi|42527055|ref|NP_972153.1| ribonuclease HII [Treponema denticola ATCC 35405]
 gi|81412195|sp|Q73MG1|RNH2_TREDE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|41817479|gb|AAS12064.1| ribonuclease HII [Treponema denticola ATCC 35405]
          Length = 198

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 77/198 (38%), Positives = 109/198 (55%), Gaps = 17/198 (8%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS--SAIISI 83
           + GIDE GRG LAGPV  AA+IL  +     + DSKK++ KKREE+ + I +  + I +I
Sbjct: 2   LCGIDEAGRGPLAGPVTAAAVILPSSFDFSILKDSKKLTEKKREEVRKTIYADPNVIWAI 61

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENL-------------QVIPRSALIDGRSIPEDLP 130
             AS+  ID+ NI +AT  A+  A E L             + I    ++DG  IP    
Sbjct: 62  GWASNYEIDEINILQATFLAMERAYEGLYLKLQEFCKLNNDKFIEPDIIVDGNFIPNIKN 121

Query: 131 CQAF-AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           C +  A++K D     + AASI+AK  RDR+M      YP+YG++ H GY T KH + I+
Sbjct: 122 CSSIKALVKADDSVYEVMAASILAKTARDRMMIRYSWIYPEYGYEKHKGYGTKKHIEAIR 181

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G S I R +F  ++NL
Sbjct: 182 FNGYSPIQRRSF-FVKNL 198


>gi|257094431|ref|YP_003168072.1| ribonuclease HII [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257046955|gb|ACV36143.1| Ribonuclease H [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 198

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 92/189 (48%), Positives = 120/189 (63%), Gaps = 6/189 (3%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
             V GIDE GRG LAGPVV AA+ILDP+    G+NDSKK+S ++RE L E I + A+   
Sbjct: 8   GLVCGIDEAGRGPLAGPVVAAAVILDPSRPIAGLNDSKKLSARRREVLAEAIRARALAWA 67

Query: 84  SSA-SHQYIDKHNIHKATLDAIYHAVENL----QVIPRSALIDGRSIPEDLPCQAFAVIK 138
            +A S + ID+ NI +A+L A+  AV  L       P  AL+DG+  P+ LPC A A++ 
Sbjct: 68  VAAASVEEIDRINILQASLLAMQRAVAALAGGHGAWPVHALVDGQHCPQ-LPCSAEAIVG 126

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD    SIAAASI+AK +RD  MR  H  YP YGFD H+GYPTA H + ++E G S  HR
Sbjct: 127 GDGRIASIAAASILAKTSRDAGMRELHATYPQYGFDRHMGYPTAFHLRALEEHGVSPHHR 186

Query: 199 LTFRPLRNL 207
            ++ P+  L
Sbjct: 187 RSYAPVARL 195


>gi|158313006|ref|YP_001505514.1| ribonuclease HII [Frankia sp. EAN1pec]
 gi|238686844|sp|A8L6C6|RNH2_FRASN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|158108411|gb|ABW10608.1| Ribonuclease H [Frankia sp. EAN1pec]
          Length = 240

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 81/200 (40%), Positives = 118/200 (59%), Gaps = 4/200 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI--NDSKKISHKKRE 69
           F  E  +  + + PVAG+DE GRGA AGP+VVAA++LD   +       DSK ++ + RE
Sbjct: 15  FGYERALVRRGLGPVAGVDEAGRGACAGPMVVAAVVLDQRRLGLLRRLADSKLLTERVRE 74

Query: 70  EL-YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           E+  + + ++A +S        ID++ +H A +  +  AV  L V PR  L DG ++   
Sbjct: 75  EVHADVLAAAAAVSTIVIPAAEIDRNGVHVANIMGMRRAVAVLDVRPRYVLTDGFAV-AG 133

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L  ++ AVIKGD +   IAAAS++AKVTRDR+MR  HK+YP+Y F  H GY TA H   +
Sbjct: 134 LGAESLAVIKGDLMVGCIAAASVVAKVTRDRIMRSLHKRYPEYDFAQHKGYVTAAHTAAM 193

Query: 189 KEKGPSCIHRLTFRPLRNLS 208
              GP   HRL++  +  L+
Sbjct: 194 TRYGPCEQHRLSYVNVAALA 213


>gi|218295991|ref|ZP_03496771.1| Ribonuclease H [Thermus aquaticus Y51MC23]
 gi|218243729|gb|EED10257.1| Ribonuclease H [Thermus aquaticus Y51MC23]
          Length = 200

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 80/193 (41%), Positives = 111/193 (57%), Gaps = 6/193 (3%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
           LEA      +  VAG+DE GRGA AGP+VV A+IL P   PF   DSK ++ K RE L E
Sbjct: 4   LEAGFWALGLR-VAGVDEAGRGAWAGPIVVGAVILPPGRYPF--KDSKLLTPKAREALAE 60

Query: 74  KITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           ++   A+  ++  A  + +D+  +++ATL A   A+  L + P + + D   +   LP  
Sbjct: 61  EVRRVALAHALGLAEVEEVDRLGVYRATLLAAKRALSALALPPEALVTDYLPLSTPLPLL 120

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
           A    + D  S S+AAASI+AKV RDRLM    + YP YGF  H GY T +HQ+ +   G
Sbjct: 121 APP--RADRESPSVAAASILAKVHRDRLMAELDRLYPGYGFAQHKGYGTPEHQEALLALG 178

Query: 193 PSCIHRLTFRPLR 205
           PS +HR  F P+R
Sbjct: 179 PSPVHRRRFTPVR 191


>gi|148243275|ref|YP_001228432.1| ribonuclease HII [Synechococcus sp. RCC307]
 gi|189043670|sp|A5GW20|RNH2_SYNR3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|147851585|emb|CAK29079.1| Ribonuclease HII [Synechococcus sp. RCC307]
          Length = 202

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 72/183 (39%), Positives = 99/183 (54%), Gaps = 5/183 (2%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA 79
             VAG+DEVGRG L GPV  AA+IL           G+ DSK +S K+R+ L  +I S  
Sbjct: 1   MIVAGVDEVGRGCLFGPVWAAAVILKAEAFDRLPALGVTDSKALSAKRRQALLPEIHSHC 60

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           +   +  AS   ID   I  AT  A+  A++ L   P   L+DG       P     V+ 
Sbjct: 61  LSYGLGQASAACIDAVGIRAATELAMCRALQRLCHSPDHVLVDGSLPLRPWPGSQETVVA 120

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GDS  L+IA ASI+AK  RD L++   +++P YG  SH GY T  H+  + + GP+ +HR
Sbjct: 121 GDSHCLAIACASILAKEGRDALLQRLDQRWPGYGLASHKGYGTKAHRTALLQWGPTPLHR 180

Query: 199 LTF 201
           L+F
Sbjct: 181 LSF 183


>gi|25028481|ref|NP_738535.1| ribonuclease HII [Corynebacterium efficiens YS-314]
 gi|259507538|ref|ZP_05750438.1| ribonuclease HII [Corynebacterium efficiens YS-314]
 gi|39932418|sp|Q8FP63|RNH2_COREF RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|23493766|dbj|BAC18735.1| putative ribonuclease HII [Corynebacterium efficiens YS-314]
 gi|259164858|gb|EEW49412.1| ribonuclease HII [Corynebacterium efficiens YS-314]
          Length = 231

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 68/194 (35%), Positives = 98/194 (50%), Gaps = 4/194 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREEL 71
            E  +    + PVAG+DE GRGA  GP+ +AA IL    I     + DSK++S   R  L
Sbjct: 13  YEVALSRHGLGPVAGVDEAGRGACCGPISIAACILPDRPIADLAVLTDSKQLSPPVRARL 72

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
              +   A+  S+   S   ID+  I  A +  +  AV  L+V P   L D   IP  LP
Sbjct: 73  MPLVKKHAVAWSVIHISAADIDRFGIQHANISGMRRAVAALEVRPGYVLTDAFRIP-GLP 131

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
           C +  +  GD+ +  IAAAS++AK TRD +M    +++P YG   H GY T  H   ++ 
Sbjct: 132 CPSLPIPGGDASARCIAAASVLAKQTRDEIMTDMAQQFPQYGLAGHKGYSTKVHMDAVRR 191

Query: 191 KGPSCIHRLTFRPL 204
            G S  HR ++  +
Sbjct: 192 HGASPQHRYSYANV 205


>gi|189184531|ref|YP_001938316.1| ribonuclease HII [Orientia tsutsugamushi str. Ikeda]
 gi|238692024|sp|B3CUN5|RNH2_ORITI RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|189181302|dbj|BAG41082.1| ribonuclease HII [Orientia tsutsugamushi str. Ikeda]
          Length = 205

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 85/193 (44%), Positives = 124/193 (64%), Gaps = 5/193 (2%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P+  +E     +    +AG+DE GRG LAGPVV AA++++ + +   I DSK +S  KRE
Sbjct: 3   PNLNIEQDNASE---IIAGVDEAGRGPLAGPVVAAAVVVNQSIMIDDIKDSKVLSKSKRE 59

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
             Y+KIT++   SI  AS Q IDK+NI +AT  A   AV+NL +IP   L+DG     D 
Sbjct: 60  SCYDKITNNYYYSIGIASVQEIDKYNILEATKLACIRAVKNLAIIPTKVLVDGNMNFTD- 118

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             +  ++++GD I  SIA+ASI+AKVTRDR+M+I H++YP YG++ + GY T  H + IK
Sbjct: 119 -NRFISIVRGDQICYSIASASIVAKVTRDRMMQILHQEYPVYGWNQNCGYGTKLHIEAIK 177

Query: 190 EKGPSCIHRLTFR 202
             G +  HR++F+
Sbjct: 178 TYGQTIHHRVSFK 190


>gi|21675069|ref|NP_663134.1| ribonuclease HII [Chlorobium tepidum TLS]
 gi|39932423|sp|Q8KAA5|RNH2_CHLTE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|21648308|gb|AAM73476.1| ribonuclease HII [Chlorobium tepidum TLS]
          Length = 205

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 84/201 (41%), Positives = 117/201 (58%), Gaps = 7/201 (3%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKKR 68
           + E  + E  +  V GIDE GRG LAGPVV AA++   +  P G    ++DSKK++ + R
Sbjct: 5   DFEYPLWES-LSQVCGIDEAGRGPLAGPVVAAAVVFPRHFRPTGIFAKLDDSKKLTAELR 63

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           +EL   I  SA   ++     + ID+ NI +AT+ A+  AVE+L   P   L+DG     
Sbjct: 64  DELALAIRESAESWALGVVDAETIDRINILQATMLAMNLAVESLGSTPEFLLVDGNRFRP 123

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            LP     ++KGDS   SIAAAS++AK  RD LM  +  +YP+YGF+ H GYPTA+H + 
Sbjct: 124 VLPIPYQTIVKGDSKVFSIAAASVLAKTHRDELMTTSAAEYPEYGFEVHFGYPTARHVEA 183

Query: 188 IKEKGPSCIHRLTFRPLRNLS 208
           I   G   IHR +F+ LR L 
Sbjct: 184 IARHGRCAIHRQSFK-LRKLG 203


>gi|296113384|ref|YP_003627322.1| ribonuclease HII [Moraxella catarrhalis RH4]
 gi|295921078|gb|ADG61429.1| ribonuclease HII [Moraxella catarrhalis RH4]
 gi|326559229|gb|EGE09660.1| ribonuclease HII [Moraxella catarrhalis 46P47B1]
 gi|326560783|gb|EGE11150.1| ribonuclease HII [Moraxella catarrhalis 103P14B1]
 gi|326563524|gb|EGE13783.1| ribonuclease HII [Moraxella catarrhalis 12P80B1]
 gi|326569646|gb|EGE19698.1| ribonuclease HII [Moraxella catarrhalis BC1]
 gi|326574415|gb|EGE24357.1| ribonuclease HII [Moraxella catarrhalis 101P30B1]
          Length = 239

 Score =  214 bits (547), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 87/208 (41%), Positives = 115/208 (55%), Gaps = 25/208 (12%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDP------------NNIPFGINDSKKISHKKREELY 72
           P+ GIDEVGRGAL G + V A+IL              N     +NDSKK+S K+RE+L+
Sbjct: 19  PIVGIDEVGRGALFGNMTVGAVILPNELSGRFDEIDLTNTKISLLNDSKKLSEKRREQLF 78

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVE------NLQVIPRSALIDGRSI 125
           + IT  A+  +I       ID+ NI++AT+  +  A+E      NL     + LIDG  +
Sbjct: 79  DIITDLALDYAIVDVPSTIIDQINIYQATMLGMKIAIETIIIKNNLNEKNTTILIDGNQL 138

Query: 126 PE------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           P       +   Q +A+IKGD+   SIA ASI+AKV RDRLM    K YP+Y  D H GY
Sbjct: 139 PSMDGSLGEHFHQIYAMIKGDATHSSIACASILAKVHRDRLMIQHAKSYPEYLLDKHKGY 198

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
            TAKH+  I E G    HR +F P+R L
Sbjct: 199 LTAKHKAAILEYGILPEHRRSFSPIREL 226


>gi|313681315|ref|YP_004059053.1| RNAase hii [Sulfuricurvum kujiense DSM 16994]
 gi|313154175|gb|ADR32853.1| RNase HII [Sulfuricurvum kujiense DSM 16994]
          Length = 182

 Score =  214 bits (547), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 71/177 (40%), Positives = 97/177 (54%), Gaps = 6/177 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           + GIDE GRG LAGP+ +A +IL  NN   G+NDSKK++ KKRE LYE I  ++I  I+ 
Sbjct: 3   LCGIDEAGRGPLAGPLTIAGVIL--NNPIEGLNDSKKLTEKKRESLYELICENSIYHIAR 60

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
                ID+  + +     +   +  L       L DG S       +   ++K D+    
Sbjct: 61  FDAAQIDELGLSQCLATGLREIMSALGEA--DYLYDGNSKFGVSGLR--TMVKADATVPE 116

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           ++AASI+AKVTRDR M      YP YGFD H GY  A H + I++ G   IHR TF+
Sbjct: 117 VSAASILAKVTRDREMIQLASLYPQYGFDGHKGYGCAAHIEAIRQYGYCEIHRKTFK 173


>gi|90425833|ref|YP_534203.1| ribonuclease HII [Rhodopseudomonas palustris BisB18]
 gi|122475150|sp|Q20YA2|RNH2_RHOPB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|90107847|gb|ABD89884.1| RNase HII [Rhodopseudomonas palustris BisB18]
          Length = 266

 Score =  214 bits (547), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 1/195 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E  + ++ +WPVAG DE GRG LAGPVV AA++LDP  IP G++DSK+++  KRE
Sbjct: 44  PSFRRERALLKRGVWPVAGCDEAGRGPLAGPVVAAAVVLDPKRIPKGLDDSKRLTADKRE 103

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           +L+E+I ++A  +++ AS   ID+ NI +A+L A+  AV  L  +PR   +DGR      
Sbjct: 104 QLFEQICATAAFAVAYASPARIDRDNILRASLWALAKAVHALPEMPRHVFVDGRD-KIAT 162

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C   AVI GD + LSIAAASIIAKV+RDRLM    +  P YGF++H GY   +H   + 
Sbjct: 163 SCDCDAVIGGDGLVLSIAAASIIAKVSRDRLMCRLAEDCPGYGFENHKGYGVPEHLAALD 222

Query: 190 EKGPSCIHRLTFRPL 204
             GPS  HR  F P+
Sbjct: 223 RLGPSKHHRRLFAPV 237


>gi|254429946|ref|ZP_05043653.1| ribonuclease HII [Alcanivorax sp. DG881]
 gi|196196115|gb|EDX91074.1| ribonuclease HII [Alcanivorax sp. DG881]
          Length = 220

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 86/190 (45%), Positives = 116/190 (61%), Gaps = 2/190 (1%)

Query: 16  AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           +    +    VAG+DEVGRG L G VV AA++LDP +   G+ DSKKIS KKR  L  +I
Sbjct: 22  SAFAWQPGMLVAGVDEVGRGPLVGAVVTAAVVLDPQHPIAGLADSKKISEKKRLALEAEI 81

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
            S A+  ++  A    ID+ NI  AT+ A+  AV  L +  ++ L+DG  +P  LPC + 
Sbjct: 82  KSHALGWALGRAEPAEIDELNILHATMLAMQRAVAGLPMAAQAVLVDGNRVPA-LPCPSQ 140

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
           AV+KGD    +I+AASI+AKV RDR M   H +YP YGFD H GYPTA H   +++ G  
Sbjct: 141 AVVKGDGRVPAISAASILAKVARDREMHALHARYPQYGFDRHKGYPTAVHMAALEQHGAL 200

Query: 195 CIHRLTFRPL 204
             HR +F P+
Sbjct: 201 AEHRRSFGPV 210


>gi|223986426|ref|ZP_03636431.1| hypothetical protein HOLDEFILI_03743 [Holdemania filiformis DSM
           12042]
 gi|223961622|gb|EEF66129.1| hypothetical protein HOLDEFILI_03743 [Holdemania filiformis DSM
           12042]
          Length = 207

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 72/198 (36%), Positives = 104/198 (52%), Gaps = 5/198 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
            E E    ++    V GIDE GRG +AGP+VVA  + D       I DSK +S KKRE+L
Sbjct: 7   LEYERSFWDQG-KHVVGIDEAGRGPIAGPLVVAGAVFDIGYANSEIYDSKALSEKKREKL 65

Query: 72  YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A    I   + + ID  NI++AT  A+       ++   + L D   +     
Sbjct: 66  FSLILREARCYKIKIVTPEEIDTLNIYRATQKAMEEI--ACEINAEAVLTDAMPL-LHCS 122

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               ++IKGD  SLSIAA SI+AKV RD +M    + YPDYGF  H GYPT  H + +++
Sbjct: 123 KPTLSIIKGDQKSLSIAAGSILAKVVRDHIMLGYDRLYPDYGFARHKGYPTKAHLEAMEK 182

Query: 191 KGPSCIHRLTFRPLRNLS 208
            G    +R ++ P+  ++
Sbjct: 183 YGVLPFYRKSYGPVARMN 200


>gi|306837307|ref|ZP_07470190.1| ribonuclease HII [Brucella sp. NF 2653]
 gi|306407620|gb|EFM63816.1| ribonuclease HII [Brucella sp. NF 2653]
          Length = 194

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 93/188 (49%), Positives = 130/188 (69%), Gaps = 2/188 (1%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
           ++    +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++  +RE LYE I + A
Sbjct: 2   KRGSKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTAARREALYEIILAKA 61

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           I +S++S S + ID  +I KA L+A+  AV  L + P  AL+DGR +P  LPC   A++K
Sbjct: 62  IAVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRDVPPGLPCPGSALVK 121

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC-IH 197
           GD  S+SIAAASI+AKVTRDR+M  A   +P YG + H GY T KH+  I+ +GP   +H
Sbjct: 122 GDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYGTQKHRAAIESEGPVPGLH 181

Query: 198 RLTFRPLR 205
           R TF P++
Sbjct: 182 RYTFAPIK 189


>gi|269926380|ref|YP_003323003.1| Ribonuclease H [Thermobaculum terrenum ATCC BAA-798]
 gi|269790040|gb|ACZ42181.1| Ribonuclease H [Thermobaculum terrenum ATCC BAA-798]
          Length = 219

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 73/197 (37%), Positives = 105/197 (53%), Gaps = 8/197 (4%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN-----NIPFGINDSKKISHKKR 68
            E  +  +    VAG+DE GRGA AGPV  A ++L P+     ++   + DSK +S  +R
Sbjct: 16  FEPTLWRQGYAYVAGLDEAGRGAWAGPVFGAVVVLPPDLSTLESLAEVVRDSKVLSPNRR 75

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E  YE I +SA+ I I +++   ID   I +AT  A   A+ +   +P   LID   I  
Sbjct: 76  ELAYEAIKASALYIGIGASTPDEIDTLGISRATELAWLRALRDAD-LPDVLLIDAFKI-R 133

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
                  A++ GD++ LSIAAAS++AKV RDR M    +  P + F  H GY T +HQ  
Sbjct: 134 ACSINQVAIVDGDALCLSIAAASVVAKVLRDRYMADLTEYVPGFSFHKHKGYGTREHQAE 193

Query: 188 IKEKGPSCIHRLTFRPL 204
           I   G +  HR +F P+
Sbjct: 194 IAIYGVTPQHRRSFAPI 210


>gi|241896010|ref|ZP_04783306.1| ribonuclease HII [Weissella paramesenteroides ATCC 33313]
 gi|241870741|gb|EER74492.1| ribonuclease HII [Weissella paramesenteroides ATCC 33313]
          Length = 254

 Score =  214 bits (546), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 18/206 (8%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII-------LDPNNIPFGINDSKK 62
                E    ++    VAGIDEVGRG LAGP              +D +     ++DSK+
Sbjct: 57  KRLNFERKAWQQG-KVVAGIDEVGRGPLAGP-------VVAAAVVIDDSFDMTIVHDSKQ 108

Query: 63  ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           +S K R+ +  +I    +  +      + ID+ NI++A+  A+  +VE L V     LID
Sbjct: 109 LSEKTRQSIDTEIREKVVDFAFGVVDAKDIDRLNIYEASRVAMRQSVEALSVPIDGLLID 168

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
             ++  DL      +IKGD  S+SI AASI+AK  RD LM+   +++P YGF+ + GY T
Sbjct: 169 AMTV--DLEIPQEKLIKGDDRSISIGAASILAKNYRDNLMKDFAQQFPGYGFEHNAGYGT 226

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207
           A+H   +   G + IHR +F P++  
Sbjct: 227 AEHLAGLNTLGITPIHRKSFAPVKKF 252


>gi|54026116|ref|YP_120358.1| ribonuclease HII [Nocardia farcinica IFM 10152]
 gi|81373729|sp|Q5YS47|RNH2_NOCFA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|54017624|dbj|BAD58994.1| putative RNase HII [Nocardia farcinica IFM 10152]
          Length = 251

 Score =  214 bits (546), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 81/196 (41%), Positives = 112/196 (57%), Gaps = 4/196 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREEL 71
           LEA +    + PVAG+DE GRG  AGP+VVAA +L P   +   G++DSKK++   REEL
Sbjct: 22  LEAALIRGGLGPVAGVDEAGRGPCAGPLVVAACLLAPKAYDRLAGLDDSKKLTEAAREEL 81

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y  IT  A+   +       ID   IH A ++ +  AV  L+  P   L DG  +P  L 
Sbjct: 82  YPVITRLALAWEVVVIPAWEIDAIGIHVANIEGMRRAVAGLRQRPGYVLTDGFRVP-GLA 140

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD+ +  IAAASI+AKVTRDR+M     ++P YGF +H GY T +H   ++ 
Sbjct: 141 APSLPVIGGDAAAACIAAASILAKVTRDRIMVELDSRHPGYGFAAHKGYNTPEHTAALQR 200

Query: 191 KGPSCIHRLTFRPLRN 206
            GP   HR ++R +R 
Sbjct: 201 LGPCSEHRRSWRNVRE 216


>gi|319441364|ref|ZP_07990520.1| ribonuclease HII [Corynebacterium variabile DSM 44702]
          Length = 227

 Score =  214 bits (546), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 107/204 (52%), Gaps = 6/204 (2%)

Query: 4   NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSK 61
            S+PE     LE  V +  + PVAG+DE GRGA  GPV +AA IL P  +P   G+ DSK
Sbjct: 7   RSMPE--GRTLEWAVHKAGLDPVAGVDEAGRGACCGPVTIAACILPPGPLPELDGLTDSK 64

Query: 62  KISHKKREELYEKITSSAIISIS-SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K++ KKR+ L++ I   A+          Y+D   I  A L  +  AV  L V P   L 
Sbjct: 65  KLTAKKRDRLFDIIVDVAVDYAVVHVPASYVDDWGIQHANLGGMRRAVARLDVRPGYILT 124

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           D   I +        V+KGD I   I+AAS++AKV+RDR+M     +YP YG   H GY 
Sbjct: 125 DAMKI-DGFTRPHLPVVKGDLICRCISAASVLAKVSRDRMMVDLDARYPGYGLAGHKGYG 183

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPL 204
           TA H + +   G +  HR T+  +
Sbjct: 184 TAAHMESVCLLGGTPEHRYTYSNV 207


>gi|114321001|ref|YP_742684.1| RNase HII [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311401|sp|Q0A7J3|RNH2_ALHEH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|114227395|gb|ABI57194.1| RNase HII [Alkalilimnicola ehrlichii MLHE-1]
          Length = 198

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 78/192 (40%), Positives = 109/192 (56%), Gaps = 20/192 (10%)

Query: 25  PVAGIDEVGRGALAGPVVVAAI---------ILDPNNIPFGINDSKKISHKKREELYEKI 75
            +AG+DEVGRG L                  ILDP+    G+ DSK++S  +R EL  +I
Sbjct: 13  LLAGVDEVGRGPL---------AGAVVAAAVILDPDRPIAGLRDSKRLSAARRSELDRRI 63

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
            + A+ +S+  A    ID+ NI +A++ A+  AV  L   P  AL+DG   P  LPC A 
Sbjct: 64  RAQALAVSLGRAEVAEIDRLNILQASMLAMQRAVAGLDPAPVQALVDGNRAPA-LPCPAQ 122

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
           A++KGD    +IAAASI+AK  RD  MR   ++YP YGF+ H+GYPT +H Q ++  G  
Sbjct: 123 AIVKGDDRVPAIAAASILAKQARDAEMRALAEQYPGYGFERHMGYPTTEHLQALRTLGAC 182

Query: 195 CIHRLTFRPLRN 206
             HR +F P+R 
Sbjct: 183 PAHRRSFAPVRR 194


>gi|332295819|ref|YP_004437742.1| Ribonuclease H [Thermodesulfobium narugense DSM 14796]
 gi|332178922|gb|AEE14611.1| Ribonuclease H [Thermodesulfobium narugense DSM 14796]
          Length = 210

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 79/180 (43%), Positives = 104/180 (57%), Gaps = 1/180 (0%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-II 81
            +P  G+DEVGRGALAGP+VV A+  D + +  G+ DSK +  ++R EL + I   A   
Sbjct: 19  FFPSLGMDEVGRGALAGPLVVGAVYFDKDYMIDGLKDSKLLKDQERRELCDIIKRKASYW 78

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           SI  A H  IDK NI+ A + A   A+ N+  +P +   DG    +  P +     K D 
Sbjct: 79  SIGWAYHWEIDKLNIYSALVLACKRAILNMNFLPEAIFFDGSLKLKTFPFKHIVFPKADR 138

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +  S+AAASIIAKV RD  M    K YPDY FD H GY T  H +V+++KG S IHR TF
Sbjct: 139 LVPSVAAASIIAKVARDDYMINISKYYPDYLFDIHKGYGTKFHLEVLEKKGLSKIHRKTF 198


>gi|50365354|ref|YP_053779.1| ribonuclease HII, primer excision [Mesoplasma florum L1]
 gi|50363910|gb|AAT75895.1| Ribonuclease HII, primer excision [Mesoplasma florum L1]
          Length = 208

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 82/197 (41%), Positives = 117/197 (59%), Gaps = 5/197 (2%)

Query: 14  LEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
            ++ +REK     ++G DE GRGA+AGPVVVA++IL  +     I DSKK+S K+RE L 
Sbjct: 9   FDSQIREKYKTDFISGSDEAGRGAMAGPVVVASVILPKDYKNCLIRDSKKLSKKQRESLC 68

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLP 130
           E+I S AI  +I       +D  N  +A+   +  ++ NL+  P   LID    I ++  
Sbjct: 69  EEIKSVAISYAIEIIEADEVDILNPKQASRIGMTKSIMNLKPKPDLCLIDAENIIIQEYV 128

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
           C  F  IKGD +S SIAAASI+AK TRD +M    K YP+Y F+SH GY   +H +  K 
Sbjct: 129 CAPF--IKGDDLSQSIAAASILAKTTRDNIMLDYAKIYPEYNFESHKGYCVKEHVEKTKM 186

Query: 191 KGPSCIHRLTFRPLRNL 207
            G   IHR T++P++++
Sbjct: 187 LGVLPIHRKTYKPIKDI 203


>gi|227824335|ref|ZP_03989167.1| ribonuclease HII [Acidaminococcus sp. D21]
 gi|226904834|gb|EEH90752.1| ribonuclease HII [Acidaminococcus sp. D21]
          Length = 270

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 77/197 (39%), Positives = 113/197 (57%), Gaps = 2/197 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E +  E+    VAG DE GRG LAGP+V AA+IL       G+NDSKK+  K+RE LY
Sbjct: 57  EPERIFWEQGFVHVAGTDEAGRGPLAGPLVTAAVILPHEIDLPGLNDSKKVPPKRREALY 116

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           ++I   A+ +++     Q ID  NI++A   ++   + +L   P +AL D   +   +  
Sbjct: 117 DEILQQALAVTVRILGPQEIDTLNIYQAAKQSMQMCLTHLSAAPDAALTDAMPLSL-VGI 175

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               ++ GD+ S +IAAASIIAKVTRDR+M    + YP YGF S+ GY +  H   +   
Sbjct: 176 PVKDLVHGDARSAAIAAASIIAKVTRDRIMVELDQTYPGYGFSSNKGYGSKAHLDALAAL 235

Query: 192 GPSCIHRLTFRPLRNLS 208
           G +  HR T+ P++ L+
Sbjct: 236 GVTPWHRRTYEPIKGLA 252


>gi|159470503|ref|XP_001693396.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158282899|gb|EDP08650.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 197

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 84/193 (43%), Positives = 116/193 (60%), Gaps = 10/193 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN-----NIPFGINDSKKISHKKREELYEKIT--SS 78
           V G DE GRG LAGPVV A  +L         +P G+NDSK I+  +RE ++E +T  S 
Sbjct: 1   VGGADEAGRGPLAGPVVAAVCVLPHQSDTSWQMPAGLNDSKAITEDEREAIFEALTTDSR 60

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP---RSALIDGRSIPEDLPCQAFA 135
              ++S   H+ ID+ NI +A L A+ ++  ++          L+DG  +P+DLPC A A
Sbjct: 61  VRWAVSIIDHETIDRINILQAALSAMRNSALDVHGQAPGLDYLLVDGNKLPKDLPCPARA 120

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           V+KGD+    IAAASIIAKVTRDRLM    K+YP YGF  H GY   +H   I   GPS 
Sbjct: 121 VVKGDATVACIAAASIIAKVTRDRLMLELDKQYPQYGFAQHKGYGVPQHMAAIHTHGPSA 180

Query: 196 IHRLTFRPLRNLS 208
           +HR +F P+++++
Sbjct: 181 VHRRSFEPVKSMT 193


>gi|157737860|ref|YP_001490544.1| ribonuclease HII [Arcobacter butzleri RM4018]
 gi|189043562|sp|A8EVA1|RNH2_ARCB4 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157699714|gb|ABV67874.1| ribonuclease HII [Arcobacter butzleri RM4018]
          Length = 192

 Score =  214 bits (545), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 77/187 (41%), Positives = 105/187 (56%), Gaps = 7/187 (3%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82
           M  + GIDE GRG LAGP+VVA +IL  +    G+NDSK +S KKRE+L+++I   +   
Sbjct: 1   MKNLCGIDEAGRGPLAGPLVVAGVILLED--IVGLNDSKVLSEKKREKLFDEIKEKSKYH 58

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA-FAVIKGDS 141
           I  +  + ID+  I      +I   +ENL+    S L+DG +   +   Q     IK D+
Sbjct: 59  IVFSDAKLIDEKGISFCLKSSILEIIENLKEFSNSFLMDGNT---NFGIQILQKEIKADA 115

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
               ++AASI+AKV+RDR M      YP Y F  H GY T  H + IKE G S IHR TF
Sbjct: 116 KYAQVSAASILAKVSRDRFMDEISPLYPKYDFHKHKGYGTKAHIEAIKEFGRSDIHRHTF 175

Query: 202 RPLRNLS 208
           + L+ L 
Sbjct: 176 K-LKALG 181


>gi|53803396|ref|YP_114857.1| ribonuclease HII [Methylococcus capsulatus str. Bath]
 gi|81681269|sp|Q604U3|RNH2_METCA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|53757157|gb|AAU91448.1| ribonuclease HII [Methylococcus capsulatus str. Bath]
          Length = 193

 Score =  214 bits (545), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 75/184 (40%), Positives = 103/184 (55%), Gaps = 2/184 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAGIDEVGRG +AGPV+ AA+I  P     G+ DSK++   +R  L  +I S ++  ++
Sbjct: 4   LVAGIDEVGRGCIAGPVIAAAVIFAPGQDTHGLADSKRLRPDRRLVLAGRICSESLAWAV 63

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID+ NI +AT  A+  AV  L V+P    +DG   P  L C   A++ GD+  
Sbjct: 64  GRAEVSEIDQLNILRATHLAMCRAVAALPVLPDWVRVDGNRYPP-LDCPGEAIVGGDASV 122

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             IAAASI+AKV RDR M +  +  P Y    H GYPT  H   +  +G S  HR +F P
Sbjct: 123 AEIAAASILAKVFRDREMEVLDRLCPGYALGVHKGYPTRLHIDRLASRGASFFHRRSFAP 182

Query: 204 LRNL 207
           +R +
Sbjct: 183 VRAV 186


>gi|320159510|ref|YP_004172734.1| ribonuclease HII [Anaerolinea thermophila UNI-1]
 gi|319993363|dbj|BAJ62134.1| ribonuclease HII [Anaerolinea thermophila UNI-1]
          Length = 224

 Score =  214 bits (545), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 114/222 (51%), Gaps = 31/222 (13%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAI------------ILDPNN 52
            +P  P    E  + +  +  VAG+DE GR                        IL   +
Sbjct: 8   DLPHDPTLAFEQSLWQAGVLHVAGVDEAGR------------GAWAGPVAAAAVILPSGD 55

Query: 53  IPF-----GINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYH 106
                   G+ DSK+++ K RE   E I  +A+   +  AS + I+   I  AT  A+  
Sbjct: 56  SALLERLHGVRDSKQMTAKAREGFAEVIRQTALAWGVGFASVEEIETQGIVPATRLAMMR 115

Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166
           A++   + P   LID   +PE +P    ++IKGD+ SLSIAAAS++AK  RD LMR   +
Sbjct: 116 ALQACALSPTHLLIDALRLPE-IPLPQTSLIKGDARSLSIAAASVLAKTARDALMRDLAR 174

Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNLS 208
           +YP YGF+ H GY TA+H+  +++ GP  +HR T+RP+ +LS
Sbjct: 175 QYPQYGFELHKGYGTARHRAALEQWGPCPLHRRTYRPVMHLS 216


>gi|225021101|ref|ZP_03710293.1| hypothetical protein CORMATOL_01113 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946101|gb|EEG27310.1| hypothetical protein CORMATOL_01113 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 236

 Score =  214 bits (545), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 70/197 (35%), Positives = 100/197 (50%), Gaps = 4/197 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKR 68
           H   E  + +  + PVAG+DE GRGA AGP+ +AA IL   P      + DSKK+S   R
Sbjct: 7   HRTFEVALHQAGLGPVAGVDEAGRGACAGPITIAACILPSQPLAALSRLTDSKKLSAATR 66

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
             L+  I   A+  SI   S   ID++ I  A +  +  AV  L V P   L D   + +
Sbjct: 67  AALFPLIQHHAVAWSILHISAADIDQYGIQHANVFGMRRAVALLDVQPGYVLTDALKV-D 125

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
              C    +I GD+ +  I+AAS++AK  RD +M    + YP Y F SH GY T  H   
Sbjct: 126 GFACSYLPIIGGDAAARCISAASVLAKHARDLVMAELAETYPRYEFASHKGYGTKVHMTA 185

Query: 188 IKEKGPSCIHRLTFRPL 204
           ++  G S +HR ++  +
Sbjct: 186 VRRYGASPVHRYSYANV 202


>gi|94969905|ref|YP_591953.1| RNase HII [Candidatus Koribacter versatilis Ellin345]
 gi|189043528|sp|Q1IMM1|RNH2_ACIBL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|94551955|gb|ABF41879.1| RNase HII [Candidatus Koribacter versatilis Ellin345]
          Length = 254

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 85/192 (44%), Positives = 114/192 (59%), Gaps = 3/192 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E +  +     +AGIDEVGRGAL GPVV AA+ILDPN    G+ DSK +  + RE L +
Sbjct: 36  YEKLAADSGAKLIAGIDEVGRGALFGPVVAAAVILDPNYRIKGLRDSKLLPAETREILSK 95

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I    I  SI++     ID+ NI+ A+  A+ HAV  L   P   LID   +  DL C 
Sbjct: 96  RIREHCIAWSIAAVDVARIDQLNIYWASNLAMKHAVRGLSCQPDHLLIDAMKL--DLDCA 153

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              +I GD++S SIAAASIIAKV RD L+R     +P+Y   S+ GY   KH + ++E G
Sbjct: 154 QTPIIHGDALSASIAAASIIAKVHRDALIREWAPIFPEYDLASNKGYSAPKHIKALREFG 213

Query: 193 PSCIHRLTFRPL 204
           PS +HR +F P+
Sbjct: 214 PSPLHRQSFAPV 225


>gi|300783884|ref|YP_003764175.1| ribonuclease HII [Amycolatopsis mediterranei U32]
 gi|299793398|gb|ADJ43773.1| ribonuclease HII [Amycolatopsis mediterranei U32]
          Length = 280

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 75/201 (37%), Positives = 114/201 (56%), Gaps = 4/201 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69
           + L+  +  + + PVAG+DE G GA AGP+VVAA +L   +      + DSK ++ K R+
Sbjct: 8   WGLQGALDRRGLGPVAGVDEAGAGACAGPLVVAACVLKQGDAAKLIELTDSKMMTAKARD 67

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            +Y+ + + A+  S+     + +D + I    L+ +  A   L+V P   L DG  +P  
Sbjct: 68  RVYDLVLARAVDYSVIVIPTEEVDLYGIRVMNLEGMRRAAAALRVQPGYVLTDGFRVP-G 126

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L     AVIKGD     IAAAS++AKVTRDR+M   H  +P YGFD H GY T+ H   +
Sbjct: 127 LTAPNTAVIKGDRSVACIAAASVLAKVTRDRIMAGYHDDFPHYGFDVHKGYSTSDHLAAL 186

Query: 189 KEKGPSCIHRLTFRPLRNLSV 209
           +E GPS +HR ++  +  ++V
Sbjct: 187 REHGPSDVHRWSYTNVATVAV 207


>gi|311898762|dbj|BAJ31170.1| putative ribonuclease HII [Kitasatospora setae KM-6054]
          Length = 227

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 69/201 (34%), Positives = 108/201 (53%), Gaps = 1/201 (0%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           + P   +E  + +     VAG+DEVGRGA AGPV+V A +      P G+ DSK ++ ++
Sbjct: 4   DPPTHAVERSLHQAGARVVAGLDEVGRGAWAGPVMVGAAVTGLRRPPEGLTDSKLLTERR 63

Query: 68  REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R  L   +       +I SAS    D+  +  A   A   A+E L V P + ++DG+   
Sbjct: 64  RAALAPVLEEWVTAYAIGSASALECDELGMTAALRLAAVRALEELPVRPDAVILDGKHDY 123

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
              P +   VIKGD   + ++AAS++AKV RD LM      +P++ F  + GYP+  H+ 
Sbjct: 124 LGGPWRVRTVIKGDQSCVCVSAASVLAKVRRDALMAELGSGHPEFAFAENAGYPSPTHRA 183

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            ++E GP+  HRL++  L +L
Sbjct: 184 ALEEHGPTEHHRLSWAYLDDL 204


>gi|296139349|ref|YP_003646592.1| ribonuclease H [Tsukamurella paurometabola DSM 20162]
 gi|296027483|gb|ADG78253.1| Ribonuclease H [Tsukamurella paurometabola DSM 20162]
          Length = 228

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 81/195 (41%), Positives = 113/195 (57%), Gaps = 4/195 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71
           +E+++    + PVAGIDE GRGA AGP+ VAA IL     P    ++DSKK+S   RE L
Sbjct: 20  MESVLGRAGLGPVAGIDEAGRGACAGPMTVAACILPRKIPPSLARLDDSKKLSEIARERL 79

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y +I   A+  S+ +     +D+  +H A +  +  A+  LQV P   LIDG ++P  L 
Sbjct: 80  YPEILKHAVSWSVVTIPAAEVDRLGVHVANISGMRRAIATLQVTPGYVLIDGFTVP-GLG 138

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD+ +  IAAAS++AKVTRDR+M      Y  YGF  H GY TA H   + E
Sbjct: 139 IPSLPVIGGDASASCIAAASVLAKVTRDRVMAELDADYDGYGFAVHKGYSTAAHMAALGE 198

Query: 191 KGPSCIHRLTFRPLR 205
            GPS  HR+ ++ +R
Sbjct: 199 LGPSDQHRMRYQNVR 213


>gi|305680699|ref|ZP_07403506.1| ribonuclease HII [Corynebacterium matruchotii ATCC 14266]
 gi|305658904|gb|EFM48404.1| ribonuclease HII [Corynebacterium matruchotii ATCC 14266]
          Length = 236

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 69/197 (35%), Positives = 100/197 (50%), Gaps = 4/197 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKR 68
           H   E  + +  + PVAG+DE GRGA AGP+ +AA IL P  +     + DSKK+S   R
Sbjct: 7   HRTFEVALHQAGLGPVAGVDEAGRGACAGPITIAACILPPQPLAALSRLTDSKKLSAATR 66

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
             L+  I   A+  SI   S   ID++ I  A +  +   V  L V P   L D   + +
Sbjct: 67  AALFPLIQHHAVAWSILHISAADIDQYGIQHANVFGMRRVVALLDVQPGYVLTDALKV-D 125

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
              C    +I GD+ +  I+AAS++AK  RD +M    + YP Y F SH GY T  H   
Sbjct: 126 GFACSYLPIIGGDAAARCISAASVLAKHARDLVMAELAETYPRYEFASHKGYGTKVHMTA 185

Query: 188 IKEKGPSCIHRLTFRPL 204
           ++  G S +HR ++  +
Sbjct: 186 VRRYGASPVHRYSYANV 202


>gi|19553236|ref|NP_601238.1| ribonuclease HII [Corynebacterium glutamicum ATCC 13032]
 gi|62390872|ref|YP_226274.1| ribonuclease HII [Corynebacterium glutamicum ATCC 13032]
 gi|41326211|emb|CAF20373.1| PROBABLE RIBONUCLEASE HII PROTEIN [Corynebacterium glutamicum ATCC
           13032]
          Length = 222

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 69/194 (35%), Positives = 95/194 (48%), Gaps = 4/194 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREEL 71
            E  +    + PVAG+DE GRGA  GP+ +AA IL    I     + DSKK+S   RE+L
Sbjct: 10  FEVTLSRNGLGPVAGVDEAGRGACCGPISIAACILPDKPIQELAALTDSKKLSASTREKL 69

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
              I   A+  S+   S Q ID+  I  A +  +  AV  L   P   L D   +P    
Sbjct: 70  MPLIKKHALAWSVIVISAQDIDRFGIQHANISGMRRAVAALGTQPGYVLTDAMKVP-GFT 128

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +I GD+ +  IAAAS++AK TRD +M      YP YG + H GY T  H   ++ 
Sbjct: 129 VPYLPIIGGDASARCIAAASVLAKQTRDDIMTDMANDYPHYGLEIHKGYSTKIHMDAVRH 188

Query: 191 KGPSCIHRLTFRPL 204
            G S  HR ++  +
Sbjct: 189 HGASPEHRYSYANV 202


>gi|254465727|ref|ZP_05079138.1| ribonuclease HII [Rhodobacterales bacterium Y4I]
 gi|206686635|gb|EDZ47117.1| ribonuclease HII [Rhodobacterales bacterium Y4I]
          Length = 180

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 82/175 (46%), Positives = 115/175 (65%)

Query: 33  GRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYID 92
           GRG LAGPV  AA++LD   IP G+NDSKK+S KKRE L   I S A  +I+ A+ + ID
Sbjct: 2   GRGPLAGPVTAAAVVLDAAAIPDGLNDSKKLSLKKREALEGAILSCAQTAIAHATVEEID 61

Query: 93  KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASII 152
             NI +A+  A+  AV  L   P   LIDG  IP+ L     AV+KGD+ SLSIAAASII
Sbjct: 62  SLNILRASHLAMERAVAALDPAPDYLLIDGNLIPKGLLLPCEAVVKGDAKSLSIAAASII 121

Query: 153 AKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           AK+ RDR+M    +++P YG++ + GYP+ +H++ + + G +  HR +F+P+ N+
Sbjct: 122 AKLARDRIMVDLAQQFPGYGWEKNAGYPSKQHREALVQLGVTPHHRRSFKPVHNI 176


>gi|317125409|ref|YP_004099521.1| ribonuclease H [Intrasporangium calvum DSM 43043]
 gi|315589497|gb|ADU48794.1| Ribonuclease H [Intrasporangium calvum DSM 43043]
          Length = 264

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 106/221 (47%), Gaps = 19/221 (8%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGIN 58
           M   +  ++P   +E  ++      +AG+DEVGRGALAGPV V  +++D    + P G+ 
Sbjct: 1   MAVRTPSKKPSLRVERQLQRAGHRLLAGMDEVGRGALAGPVSVGVVVIDETVRSAPTGVK 60

Query: 59  DSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117
           DSK ++ + R  L  +I   A+  S+  AS   ID   I  A   A   A+  L+V+P  
Sbjct: 61  DSKLLTERARRGLVPRIQRWAVAYSVGHASPAEIDDIGIMAALRLAGLRALATLEVVPDL 120

Query: 118 ALIDGRSIPEDLPC----------------QAFAVIKGDSISLSIAAASIIAKVTRDRLM 161
            ++DG       P                     +IK D    S+AAAS+IAKV RD LM
Sbjct: 121 VILDGNHDWLTAPYEVGLLAFADAAGPTTPPVTTMIKADLKCSSVAAASVIAKVERDELM 180

Query: 162 RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
                ++P YG+  + GY   +H   +   GP  +HR ++R
Sbjct: 181 VRLGAEHPAYGWTLNKGYSAPEHIDALARIGPCELHRRSWR 221


>gi|227549010|ref|ZP_03979059.1| ribonuclease HII [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078920|gb|EEI16883.1| ribonuclease HII [Corynebacterium lipophiloflavum DSM 44291]
          Length = 213

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/196 (36%), Positives = 101/196 (51%), Gaps = 4/196 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREEL 71
            E  + +  + PVAG+DE GRGA  GPV VAA +L P  +    G+ DSK++    R  L
Sbjct: 10  YEVALDKAGLGPVAGVDEAGRGACFGPVTVAACVLPPRPLAQLDGLTDSKQLRPVARASL 69

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I   A+  ++       ID+  I  A +D    AV  L   P   L+D   +P  L 
Sbjct: 70  YDAICDVALSFAVVHIPAAEIDRRGIQVANVDGARRAVAKLGARPGYVLVDALRVP-GLT 128

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +I GDS +  IAAAS++AKV+RDRL+    ++Y DYG   H GY T  H   ++ 
Sbjct: 129 APQLPIIGGDSTARCIAAASVLAKVSRDRLVTEMAQRYADYGIAGHKGYGTQAHMAAVRR 188

Query: 191 KGPSCIHRLTFRPLRN 206
            G S  HR ++  +R 
Sbjct: 189 YGASDEHRYSYANVRQ 204


>gi|294155904|ref|YP_003560288.1| ribonuclease HII [Mycoplasma crocodyli MP145]
 gi|291599929|gb|ADE19425.1| ribonuclease HII [Mycoplasma crocodyli MP145]
          Length = 204

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 71/187 (37%), Positives = 108/187 (57%), Gaps = 2/187 (1%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           K    + G+DE GRGALAGP+VVA +I   N     INDSKK++ K+RE L+ KI   AI
Sbjct: 10  KRFEKILGMDEAGRGALAGPLVVAGVIFPANYKNDEINDSKKLTSKQRENLFFKIQEDAI 69

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
              I   S+  +D+ N  KA++  +      L       + D   +      +   ++KG
Sbjct: 70  AYEIIELSNFEVDELNPKKASIVGMEKIANLLADKYDVVITDFEKLNLQ-DKKQINLVKG 128

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D+IS+S+AAASI+AK  RD++MR  H KYP + +D + GY T  H + +++ G S  HRL
Sbjct: 129 DTISISVAAASILAKHYRDQVMRKLHLKYPMFSWDKNKGYGTKLHLEGLRKNGVSPFHRL 188

Query: 200 TFRPLRN 206
           +++P++ 
Sbjct: 189 SYKPVKQ 195


>gi|328752252|gb|EGF65868.1| ribonuclease HII [Propionibacterium acnes HL020PA1]
          Length = 204

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 76/195 (38%), Positives = 104/195 (53%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELY 72
           E  +    + PVAG DE GRGA AGP+V AA+ILD        G+ DSK +S  KRE L+
Sbjct: 4   ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 63

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   A+ +S         D+  + +A +  +  AV  L V P   L DG  + + L  
Sbjct: 64  NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 122

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               + KGDS+   +AAASI+AKV RDR+M     + P Y F  H GY TA  Q+ +KE 
Sbjct: 123 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALQQRRLKEL 182

Query: 192 GPSCIHRLTFRPLRN 206
           GPS  HR+++  +R 
Sbjct: 183 GPSRQHRMSYANVRR 197


>gi|167750814|ref|ZP_02422941.1| hypothetical protein EUBSIR_01796 [Eubacterium siraeum DSM 15702]
 gi|167656249|gb|EDS00379.1| hypothetical protein EUBSIR_01796 [Eubacterium siraeum DSM 15702]
          Length = 219

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 89/196 (45%), Positives = 116/196 (59%), Gaps = 2/196 (1%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
            E+    L       +   + GIDE GRG LAG V  AA+IL  + I  GINDSKK++ K
Sbjct: 13  EEKKDLFLYDKEMRTHCGVICGIDEAGRGPLAGDVYAAAVILPDDIIIDGINDSKKLTEK 72

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           KRE L++ I   A+   I++AS + ID  NI  A + A+  A + L V P +ALIDG   
Sbjct: 73  KREALFDIIREKAVSYCIATASVEEIDSMNILNAAMLAMKRAYDGLDVKPDTALIDGNKT 132

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  L     AV+KGD+ S SIAAASI+AKV RDR M+   +KYP Y F+ H GY T  H 
Sbjct: 133 P-GLDIPETAVVKGDATSASIAAASILAKVARDRYMKELAEKYPQYMFEKHKGYGTKLHY 191

Query: 186 QVIKEKGPSCIHRLTF 201
           +++ + G S IHR TF
Sbjct: 192 EMLDKYGASDIHRKTF 207


>gi|148284488|ref|YP_001248578.1| ribonuclease HII [Orientia tsutsugamushi str. Boryong]
 gi|189043633|sp|A5CDI4|RNH2_ORITB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|146739927|emb|CAM79925.1| ribonuclease HII [Orientia tsutsugamushi str. Boryong]
          Length = 205

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 87/193 (45%), Positives = 123/193 (63%), Gaps = 5/193 (2%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P+  +E     +    VAG+DE GRG LAGPVV AA++++ + +   I DSK +S  KRE
Sbjct: 3   PNLNIEQDNASE---IVAGVDEAGRGPLAGPVVAAAVVVNQSIMIDDIKDSKVLSKSKRE 59

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
             Y+KIT+S   SI  AS Q IDK+NI +AT  A   AV+NL +IP   L+DG     D 
Sbjct: 60  SCYDKITNSYYYSIGIASVQEIDKYNILEATKLACIRAVKNLAIIPTKVLVDGNMNFTD- 118

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             +  ++++GD I  SI++ASI+AKVTRDR+M+I HK+YP YG++ + GY T  H   IK
Sbjct: 119 -NRFISIVRGDQICYSISSASIVAKVTRDRIMQILHKEYPVYGWNQNCGYGTKLHIDAIK 177

Query: 190 EKGPSCIHRLTFR 202
             G +  HR++F+
Sbjct: 178 TYGQTIHHRVSFK 190


>gi|238650442|ref|YP_002916294.1| ribonuclease HII [Rickettsia peacockii str. Rustic]
 gi|238624540|gb|ACR47246.1| ribonuclease HII [Rickettsia peacockii str. Rustic]
          Length = 188

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 87/178 (48%), Positives = 113/178 (63%), Gaps = 2/178 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
            VAGIDE GRG LAGPVV + +I+D  NI  GI DSKK+S KKRE LYE+ITS+ + + +
Sbjct: 11  IVAGIDEAGRGPLAGPVVASTVIVDNANIITGIKDSKKLSKKKRELLYEQITSNYVWATA 70

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             SH  ID  NI +AT  A   AV NL + P   L+DG    +D   +  ++I GD++SL
Sbjct: 71  IISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKD--ERFVSIINGDNLSL 128

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           SIAAASI+AKVTRDRLM     ++P Y +  + GY   +H + I   G S  HR +FR
Sbjct: 129 SIAAASIVAKVTRDRLMLDLSAEFPQYLWHKNSGYGIKEHIEAINIHGLSPYHRRSFR 186


>gi|302525179|ref|ZP_07277521.1| ribonuclease HII [Streptomyces sp. AA4]
 gi|302434074|gb|EFL05890.1| ribonuclease HII [Streptomyces sp. AA4]
          Length = 257

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 75/201 (37%), Positives = 116/201 (57%), Gaps = 4/201 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69
           + L+  +  + + PVAG+DE G GA AGP+VVA+ +L P +      + DSK ++ K R+
Sbjct: 3   WGLQGALERRGLGPVAGVDEAGAGACAGPLVVASCVLRPGDAARLPELTDSKMLTAKARD 62

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            +Y+++   A+  S+     + +D   I    L+ +  AV  L+  P   L DG  +P  
Sbjct: 63  RVYDRVLQRALDYSVIVIPSEQVDLLGIRVMNLEGMRRAVAGLRTHPGYVLTDGFPVP-G 121

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           +P    AVIKGD    SIAAAS++AKVTRDR+M   H++ P YGFD H GY T+ H   +
Sbjct: 122 IPAPNVAVIKGDRSVASIAAASVLAKVTRDRIMAGLHEELPVYGFDVHKGYSTSDHLAAL 181

Query: 189 KEKGPSCIHRLTFRPLRNLSV 209
            E GPS +HR ++  +  +++
Sbjct: 182 SEHGPSPVHRWSYTNVATVAL 202


>gi|312139224|ref|YP_004006560.1| ribonuclease hii rnhb [Rhodococcus equi 103S]
 gi|311888563|emb|CBH47875.1| ribonuclease HII RnhB [Rhodococcus equi 103S]
          Length = 230

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 76/194 (39%), Positives = 111/194 (57%), Gaps = 4/194 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREEL 71
           +E+ +    + PVAG+DE GRGA AGP+VVAA +L   P+     ++DSKK++ K R+EL
Sbjct: 19  MESALVRSGLGPVAGVDEAGRGACAGPLVVAACVLGSKPHAALARLDDSKKLTEKVRDEL 78

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+  S+       +D+  +H A ++ +  AV  L V P   L DG  +P  LP
Sbjct: 79  FPVIKRLALAWSVVEIPAAEVDRIGVHVANIEGMRRAVAGLTVAPGYVLTDGFRVP-GLP 137

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD+ +  IAAAS++AKV+RDR M     + P YGF  H GY TA H   + E
Sbjct: 138 APSLPVIGGDASAACIAAASVLAKVSRDRTMVALDDELPGYGFAGHKGYSTAVHTAALNE 197

Query: 191 KGPSCIHRLTFRPL 204
            GP   HR+++  +
Sbjct: 198 LGPCREHRMSYANV 211


>gi|317059895|ref|ZP_07924380.1| ribonuclease HII [Fusobacterium sp. D12]
 gi|313685571|gb|EFS22406.1| ribonuclease HII [Fusobacterium sp. D12]
          Length = 210

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/182 (40%), Positives = 104/182 (57%), Gaps = 6/182 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           + G+DE GRG LAGPVV AA +L   +     I DSKK++ KKRE L+  I +   + I 
Sbjct: 21  IIGVDEAGRGPLAGPVVAAATLLKKYDASLEEIQDSKKLTEKKREALFSMIPNYFYVGIG 80

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQ----VIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            AS + I+ +NI  AT  A+  A+  L+    +     L+DG     +   +  A++KGD
Sbjct: 81  RASVEEIEAYNILNATFLAMRRAIAQLEEQISIEDAIILVDGNFKIRECQRKQEAIVKGD 140

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC-IHRL 199
           + SLSIA ASI+AKVTRD  +    K+YP+Y F+ H GY T  H++ I   G    +HR 
Sbjct: 141 AKSLSIATASIMAKVTRDHELLELAKQYPEYHFEKHKGYGTKMHREQILTLGAIPGVHRN 200

Query: 200 TF 201
           +F
Sbjct: 201 SF 202


>gi|257462226|ref|ZP_05626643.1| ribonuclease HII [Fusobacterium sp. D12]
          Length = 209

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/182 (40%), Positives = 104/182 (57%), Gaps = 6/182 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           + G+DE GRG LAGPVV AA +L   +     I DSKK++ KKRE L+  I +   + I 
Sbjct: 20  IIGVDEAGRGPLAGPVVAAATLLKKYDASLEEIQDSKKLTEKKREALFSMIPNYFYVGIG 79

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQ----VIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            AS + I+ +NI  AT  A+  A+  L+    +     L+DG     +   +  A++KGD
Sbjct: 80  RASVEEIEAYNILNATFLAMRRAIAQLEEQISIEDAIILVDGNFKIRECQRKQEAIVKGD 139

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC-IHRL 199
           + SLSIA ASI+AKVTRD  +    K+YP+Y F+ H GY T  H++ I   G    +HR 
Sbjct: 140 AKSLSIATASIMAKVTRDHELLELAKQYPEYHFEKHKGYGTKMHREQILTLGAIPGVHRN 199

Query: 200 TF 201
           +F
Sbjct: 200 SF 201


>gi|326575992|gb|EGE25915.1| ribonuclease HII [Moraxella catarrhalis CO72]
          Length = 248

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 86/208 (41%), Positives = 113/208 (54%), Gaps = 25/208 (12%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDP------------NNIPFGINDSKKISHKKREELY 72
           P+ GIDEVGRG L G + V A+IL              N     +NDSKK+S K+RE+L+
Sbjct: 28  PIVGIDEVGRGTLFGNMTVGAVILPNELSGRFDEIDLTNTKISLLNDSKKLSEKRREQLF 87

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVE------NLQVIPRSALIDGRSI 125
           + IT  A+  +I       ID+ NI++AT+  +  A+E      NL     + LIDG  +
Sbjct: 88  DIITDLALDYAIVDVPSTIIDQINIYQATMLGMKIAIETIIIKNNLNEKNTTILIDGNQL 147

Query: 126 PE------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           P       +   Q +A+IKGD+   SIA ASI+AKV RDRLM    K YP Y  D H GY
Sbjct: 148 PSMDGSLGEHFHQIYAMIKGDATHSSIACASILAKVHRDRLMIQHAKSYPKYLLDKHKGY 207

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
            TAKH+  I E G    HR +F P+R L
Sbjct: 208 LTAKHKAAILEYGILPEHRRSFSPIREL 235


>gi|329768911|ref|ZP_08260338.1| ribonuclease HII [Gemella sanguinis M325]
 gi|328836628|gb|EGF86286.1| ribonuclease HII [Gemella sanguinis M325]
          Length = 175

 Score =  211 bits (539), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 73/167 (43%), Positives = 110/167 (65%), Gaps = 2/167 (1%)

Query: 42  VVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKAT 100
           + AA+IL  ++   G+NDSKK+S KKREELY+KI + A+  +I   +++ I+K+NI+ A 
Sbjct: 1   MAAAVILKKDSYFEGLNDSKKLSEKKREELYDKIRNEAVAYAICEVNNEEIEKYNIYNAA 60

Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160
             A+  AVE L V P   LID     E+ P   ++++KGD  S+SIAAAS+IAKV RD L
Sbjct: 61  RIAMQRAVEKLDVKPDFLLIDAMPF-ENYPIPNYSMVKGDEKSVSIAAASVIAKVYRDNL 119

Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           M+    KYP Y F+++ GY T KH + +++ G + IHR  F P++++
Sbjct: 120 MKKYASKYPYYDFENNAGYGTKKHLEGLRKYGITPIHRRDFEPIKSM 166


>gi|318059574|ref|ZP_07978297.1| ribonuclease HII [Streptomyces sp. SA3_actG]
 gi|318075436|ref|ZP_07982768.1| ribonuclease HII [Streptomyces sp. SA3_actF]
          Length = 233

 Score =  211 bits (539), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 74/202 (36%), Positives = 108/202 (53%), Gaps = 2/202 (0%)

Query: 8   ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           E P   +E  +R       VAGIDEVGRGA AGPV V A +      P G+ DSK ++ K
Sbjct: 4   EAPTHSVERSLRATTGAKVVAGIDEVGRGAWAGPVSVCAAVTGLRRPPEGLTDSKLLTPK 63

Query: 67  KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R  L  ++       S+  AS + ID+  +  A   A   A++ L V P   ++DG   
Sbjct: 64  RRVALVVELERWVTAHSLGHASPEEIDELGMTAALRLAAGRALDGLPVRPDWVILDGNHD 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
               P     VIKGD   +S+AAAS++AKV RDRLM     ++ D+ F ++ GYP+  H+
Sbjct: 124 YLGAPWNVRTVIKGDQSCVSVAAASVLAKVARDRLMAELGAQHEDFAFAANAGYPSPAHK 183

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
             + E+GP+  HRL++  L  +
Sbjct: 184 TALAERGPTPYHRLSWSYLDAM 205


>gi|256784763|ref|ZP_05523194.1| ribonuclease HII [Streptomyces lividans TK24]
 gi|289768650|ref|ZP_06528028.1| ribonuclease HII [Streptomyces lividans TK24]
 gi|289698849|gb|EFD66278.1| ribonuclease HII [Streptomyces lividans TK24]
          Length = 233

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 73/202 (36%), Positives = 112/202 (55%), Gaps = 2/202 (0%)

Query: 8   ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           E P   +E  +R       +AG+DEVGRGA AGPV V A I      P G+ DSK ++ K
Sbjct: 4   EPPTHTVERSLRATTGAKIIAGVDEVGRGAWAGPVTVCAAITGLRRPPVGLTDSKLLTIK 63

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R EL  ++ +     ++  AS + ID   +  A   A   A+E L V P + ++DG+  
Sbjct: 64  RRTELEVELRTWVTSYALGHASPEEIDAMGMTAALRLAAVRALETLPVRPDAVILDGKHD 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
               P +   VIKGD   +++AAAS++AKV RD++M      + D+GF  + GYP+  H+
Sbjct: 124 YLGAPWRVRTVIKGDQSCIAVAAASVLAKVQRDKMMAELGVDHADFGFADNAGYPSPVHK 183

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
             ++E+GP+  HRL++  L  L
Sbjct: 184 AALEERGPTPHHRLSWAYLDAL 205


>gi|315637651|ref|ZP_07892857.1| ribonuclease HII [Arcobacter butzleri JV22]
 gi|315478105|gb|EFU68832.1| ribonuclease HII [Arcobacter butzleri JV22]
          Length = 192

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 77/187 (41%), Positives = 105/187 (56%), Gaps = 7/187 (3%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82
           M  + GIDE GRG LAGP+VVA +IL  +    G+NDSK +S KKRE+L+++I   +   
Sbjct: 1   MKNLCGIDEAGRGPLAGPLVVAGVILLED--IVGLNDSKVLSEKKREKLFDEIKEKSKHH 58

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA-FAVIKGDS 141
           I  +  + ID+  I      +I   +ENL+    S L+DG +   +   Q     IK D+
Sbjct: 59  IVFSDAKLIDEKGISFCLKSSILEIIENLKEFSNSFLMDGNT---NFGIQILQKEIKADA 115

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
               ++AASI+AKV+RDR M      YP Y F  H GY T  H + IKE G S IHR TF
Sbjct: 116 KYAQVSAASILAKVSRDRFMDEISPLYPKYDFHKHKGYGTKAHIEAIKEFGRSDIHRHTF 175

Query: 202 RPLRNLS 208
           + L+ L 
Sbjct: 176 K-LKALG 181


>gi|189345575|ref|YP_001942104.1| ribonuclease HII [Chlorobium limicola DSM 245]
 gi|189339722|gb|ACD89125.1| Ribonuclease H [Chlorobium limicola DSM 245]
          Length = 299

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 78/202 (38%), Positives = 112/202 (55%), Gaps = 8/202 (3%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHKK 67
           + E     +N   + GIDE GRG LAGPVV AA++      P       +NDSKK+S   
Sbjct: 98  DYEYPFW-RNTELLCGIDEAGRGPLAGPVVAAAVVFPRWFTPETDRLSLLNDSKKLSPGL 156

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL   I ++A+  + +    + ID+ NI  AT+ A+ +AV +L   P   L+DG    
Sbjct: 157 RTELASSIKAAALHWATALIEPETIDRINIFHATMLAMNNAVTSLSETPELLLVDGNRFR 216

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             LP     ++KGD+   SIAAAS++AK  RD +M+     YP YGF+ H GYPT +H +
Sbjct: 217 PLLPIPYETIVKGDAKVFSIAAASVLAKTCRDTIMKEYALLYPQYGFEHHFGYPTGEHIR 276

Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208
            + + G S IHR +F+ L+ L 
Sbjct: 277 AVAQYGRSPIHRKSFK-LKQLG 297


>gi|111114868|ref|YP_709486.1| ribonuclease H [Borrelia afzelii PKo]
 gi|122956434|sp|Q0SPB8|RNH2_BORAP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|110890142|gb|ABH01310.1| ribonuclease H [Borrelia afzelii PKo]
          Length = 181

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 74/180 (41%), Positives = 106/180 (58%), Gaps = 1/180 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           + GIDEVGRG + GP++ AA++     N    ++DSKK++ +KRE L   I  ++  +  
Sbjct: 2   ICGIDEVGRGCIFGPILSAAVVFKKKPNFIKELDDSKKLTKEKREYLSSLILENSYYAFG 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S+  I+K NIH A+L A+  A ENL++      IDG+ +P+       A+IKGDSI  
Sbjct: 62  EISNITIEKINIHNASLLAMQTAYENLKLNCNLVFIDGKFVPKISAKNVKAIIKGDSIID 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I AASIIAKV RD+LM    K YP Y    + GYPT +H+  IK+ G   +HR  F+ +
Sbjct: 122 EIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFKLI 181


>gi|33519750|ref|NP_878582.1| ribonuclease HII [Candidatus Blochmannia floridanus]
 gi|39932315|sp|Q7VRD2|RNH2_BLOFL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|33504095|emb|CAD83356.1| ribonuclease HII [Candidatus Blochmannia floridanus]
          Length = 205

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 77/197 (39%), Positives = 109/197 (55%), Gaps = 5/197 (2%)

Query: 16  AMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISHKKREELY 72
                K    VAG+DEVG G+L G VV +A+++   D   +  G+ DSK +S+KKR    
Sbjct: 5   KYFLSKKATIVAGVDEVGCGSLVGAVVASAVLMLYPDQEQLFSGLIDSKALSNKKRLRFC 64

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLP 130
             I   ++  SI   +   ID+ NI +A L +I  A+ NL +IP   LIDG+  P  +  
Sbjct: 65  NYIQKYSLHWSIGMVNVTEIDQLNIFQARLLSIKRAICNLSMIPDLVLIDGKHAPSLNKN 124

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                 +KGDS    I+AASIIAKVTRD+ M + H +YP YGF  + GY T  H + +  
Sbjct: 125 ILYQCFVKGDSRIPVISAASIIAKVTRDQAMMMLHTQYPKYGFHRNKGYATVFHLKQLDL 184

Query: 191 KGPSCIHRLTFRPLRNL 207
            GP+  HR TF P++ +
Sbjct: 185 YGPTIYHRKTFAPVKYM 201


>gi|145218837|ref|YP_001129546.1| ribonuclease H [Prosthecochloris vibrioformis DSM 265]
 gi|189043641|sp|A4SC35|RNH2_PROVI RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|145205001|gb|ABP36044.1| RNase HII [Chlorobium phaeovibrioides DSM 265]
          Length = 205

 Score =  211 bits (538), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 76/208 (36%), Positives = 105/208 (50%), Gaps = 20/208 (9%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAI----------ILDPNNIPFG-INDSK 61
           + E  +    M  + GIDE GRG LAGP                   P     G +NDSK
Sbjct: 4   DYEEQLWNS-MERICGIDEAGRGPLAGP------VVAAAVVFPRWFRPGKGILGRMNDSK 56

Query: 62  KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K+S   R E+   I  +A+  S+S    Q ID+ NI  AT+ A+  AV  L + P   L+
Sbjct: 57  KLSPSLRREMAPAIQDAALAWSVSVVDAQTIDRINILSATMLAMNRAVGGLGLTPDMLLV 116

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG     + P     ++ GD+   SIAAAS++AK  RD +M    + YP+YGF  H GYP
Sbjct: 117 DGNRFSPETPVAYRTLVGGDAYIYSIAAASVLAKTARDAIMSSYDRDYPEYGFARHAGYP 176

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNLS 208
           TA H   I++ G   IHR +F+ +R L+
Sbjct: 177 TAMHISAIRQHGRCPIHRFSFK-VRRLN 203


>gi|167949995|ref|ZP_02537069.1| ribonuclease HII [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 162

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 77/158 (48%), Positives = 104/158 (65%), Gaps = 2/158 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG LAGPVV AA+ILDP     G+ DSKK+S K+RE+L E+I + ++  ++
Sbjct: 6   FVAGVDEVGRGPLAGPVVAAAVILDPAQPIEGLADSKKLSEKRREQLAEQIRTQSLAWAL 65

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A  + ID+ NI +A+L A+  AVE L + P+  L+DG+  P+ L C   A+I GDS  
Sbjct: 66  GRAEVEEIDQINILQASLLAMRRAVEALALTPQRVLVDGKHAPQ-LACPVEAIIGGDSSV 124

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
            +I+AASIIA V RDR M    + +P YG   H GYPT
Sbjct: 125 EAISAASIIANVARDREMVELDQHHPGYGLARHKGYPT 162


>gi|332638611|ref|ZP_08417474.1| ribonuclease HII [Weissella cibaria KACC 11862]
          Length = 254

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 78/199 (39%), Positives = 108/199 (54%), Gaps = 4/199 (2%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +     E     + +  +AG+DEVGRG LAGPVV AA+++D       ++DSK++S K R
Sbjct: 56  QARLSFERDAWSEGL-VLAGVDEVGRGPLAGPVVAAAVVIDDQFDLLAVHDSKQLSEKAR 114

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
             L   I    +  +        ID  NI++A+  A+  A+ENL V     LID  ++  
Sbjct: 115 LALDAAIKEEVVAFAFGVVDAAAIDTLNIYEASRVAMKQAIENLSVQVDGLLIDAMTV-- 172

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           DLP     +IKGD  S+SI AASI+AK  RD LM      YP YGFD + GY TA+H   
Sbjct: 173 DLPLPQEKLIKGDDRSISIGAASILAKNFRDDLMAAYAVDYPGYGFDHNAGYGTAEHLAG 232

Query: 188 IKEKGPSCIHRLTFRPLRN 206
           +   G + IHR TF P++ 
Sbjct: 233 LAAYGVTPIHRRTFAPVKQ 251


>gi|226227701|ref|YP_002761807.1| ribonuclease HII [Gemmatimonas aurantiaca T-27]
 gi|226090892|dbj|BAH39337.1| ribonuclease HII [Gemmatimonas aurantiaca T-27]
          Length = 228

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 70/194 (36%), Positives = 113/194 (58%), Gaps = 7/194 (3%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELY 72
           +E  +R +    + G+DEVGRG LAGPVV  AI++  +     G++DSK++ H+ R  L 
Sbjct: 7   IERTLRAQYGSLLVGVDEVGRGPLAGPVVACAIVMPADRRAIAGVDDSKRLDHRTRVTLA 66

Query: 73  EKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAV----ENLQVIPRSALIDGRSIPE 127
            +I   A+  S+ +AS + +D+ NI+ AT+ A+  A+    + L   P   ++DG+ +  
Sbjct: 67  ARIRDHALALSLGAASAREVDRLNIYHATVLAMQRALARIPQRLGAEPHHVVVDGKPL-R 125

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            L     AV+KGD+    IA ASI+AKVTRDRLM    +++  Y ++ + GY T +H+  
Sbjct: 126 TLGVVHTAVVKGDAKCYGIACASIVAKVTRDRLMTALAQRHGHYAWERNAGYGTTQHRDG 185

Query: 188 IKEKGPSCIHRLTF 201
           I + G +  HR +F
Sbjct: 186 ISQHGLTAHHRRSF 199


>gi|224534867|ref|ZP_03675436.1| ribonuclease HII [Borrelia spielmanii A14S]
 gi|224513807|gb|EEF84132.1| ribonuclease HII [Borrelia spielmanii A14S]
          Length = 181

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 73/180 (40%), Positives = 107/180 (59%), Gaps = 1/180 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           + GIDEVGRG + GP++ AA++     N    ++DSKK+  +KRE L   I  ++  + +
Sbjct: 2   ICGIDEVGRGCIFGPILSAAVVFKKKPNFIKELDDSKKLKKEKREYLSSLILENSYYAFA 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S+  I+K NIH A+L A+  A ENL++      +DG+ +P+       A+IKGDSI  
Sbjct: 62  EISNITIEKINIHNASLLAMQTAYENLKLNCSLVFVDGKFVPKITAKTVKAIIKGDSIID 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I AASIIAKV RD+LM    K YP Y    + GYPT +H+  IK+ G   +HR +F+ +
Sbjct: 122 EIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKHGVLSLHRKSFKLI 181


>gi|325846098|ref|ZP_08169192.1| ribonuclease HII [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481691|gb|EGC84726.1| ribonuclease HII [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 210

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 86/200 (43%), Positives = 121/200 (60%), Gaps = 9/200 (4%)

Query: 8   ERPHF-----ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62
           ++P +     E++  + EK    +AGIDEVGRG LAGPVV  A+I+  ++   GI DSKK
Sbjct: 2   KKPRYSEFNDEIKNEIHEK-YDLIAGIDEVGRGPLAGPVVACAVIMKKDSHIEGITDSKK 60

Query: 63  ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           +S KK +ELY KI   +I  S   A++  IDK NI +AT  A+  A+E L+  P+  LID
Sbjct: 61  LSKKKMKELYGKIIDDSISYSFGYANNILIDKINIKEATKLAMKDALEGLEKTPQIVLID 120

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
              I  D+  +   ++KGD    +I+ ASI+AKV RD++M    K YP Y F+++ GY T
Sbjct: 121 AERIDTDI--KQLNIVKGDLYEYAISCASILAKVRRDKIMENFSKIYPYYSFETNAGYGT 178

Query: 182 AKHQQVIKEKGPSCIHRLTF 201
            KH Q I++ G   IHR TF
Sbjct: 179 KKHYQGIEKYGECPIHRRTF 198


>gi|269127623|ref|YP_003300993.1| Ribonuclease H [Thermomonospora curvata DSM 43183]
 gi|268312581|gb|ACY98955.1| Ribonuclease H [Thermomonospora curvata DSM 43183]
          Length = 232

 Score =  211 bits (537), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 79/200 (39%), Positives = 114/200 (57%), Gaps = 4/200 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69
           + LE  ++     PVAG+DE GRGA AGP+VVAA+IL      +  G+ DSK ++ ++RE
Sbjct: 16  YGLERALQHAGFSPVAGVDEAGRGACAGPLVVAAVILPSGRRALIDGLTDSKLLTARRRE 75

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           ELY +I   A+  +        ID+  +H+  +  +  A+  L+V P   L DG  +P  
Sbjct: 76  ELYAQIVERAVAWATVIIPRHDIDRLGLHQCNITGMRRALAQLEVRPGYVLSDGFRVP-G 134

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L     AV KGD ++  +AAAS++AKVTRDRLM   H++YP YGF  H GY T +H   +
Sbjct: 135 LDVPGLAVPKGDCVAACVAAASVVAKVTRDRLMVELHERYPQYGFAVHKGYVTREHTAAL 194

Query: 189 KEKGPSCIHRLTFRPLRNLS 208
              GP   HRL+F  +  + 
Sbjct: 195 SAHGPCPEHRLSFVNVARVG 214


>gi|292670872|ref|ZP_06604298.1| ribonuclease HII [Selenomonas noxia ATCC 43541]
 gi|292647493|gb|EFF65465.1| ribonuclease HII [Selenomonas noxia ATCC 43541]
          Length = 251

 Score =  211 bits (537), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 88/197 (44%), Positives = 116/197 (58%), Gaps = 2/197 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +  E    E     VAG+DE GRG LAGPV VAA++L        +NDSKK+SH  REEL
Sbjct: 52  YTYERAAIEAGHLIVAGVDEAGRGPLAGPVAVAAVVLPMECHLSHLNDSKKLSHAVREEL 111

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           + +IT  A    IS    + ID+ NI +AT   +Y A+  L   P   LID   +P+ L 
Sbjct: 112 FAQITEQAFSYHISLIDAETIDRMNILQATRMGMYEAIAALTPAPDEVLIDAVELPK-LS 170

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             + ++IKGD+ S SIAAASI+AKVTRD LM     +YP YGF  H GY T +H   I++
Sbjct: 171 MSSKSIIKGDAKSASIAAASILAKVTRDHLMEQYDTEYPHYGFAKHKGYGTQEHIDAIRK 230

Query: 191 KGPSCIHRLTFRPLRNL 207
            G   IHR +F P+R++
Sbjct: 231 YGVCPIHRKSFEPIRSM 247


>gi|302338381|ref|YP_003803587.1| ribonuclease H [Spirochaeta smaragdinae DSM 11293]
 gi|301635566|gb|ADK80993.1| Ribonuclease H [Spirochaeta smaragdinae DSM 11293]
          Length = 190

 Score =  211 bits (537), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 70/180 (38%), Positives = 99/180 (55%), Gaps = 4/180 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86
            GIDE GRG LAGPV  AA+IL        ++DSKK+S  KR    ++I SS    +   
Sbjct: 7   CGIDEAGRGPLAGPVTAAAVILPAAFPVGLLDDSKKLSPAKRNIALKEILSSCSYGVGWV 66

Query: 87  SHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL----IDGRSIPEDLPCQAFAVIKGDSI 142
             + ID+ NIH A+L A+  A E +    R+ +    +DG+  P+    +  A+I+GD  
Sbjct: 67  WPEEIDRINIHNASLLAMKRAFEAIDQKARTLVQIVQVDGKFPPKLDHPRIEAIIRGDQT 126

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I AASI+AK  RDR M       P + F+ H GYPT  H+++ ++ G S IHR +FR
Sbjct: 127 HPHIQAASILAKEARDRWMIRYSWIEPAWHFERHKGYPTKLHRELCRQYGLSEIHRKSFR 186


>gi|88658621|ref|YP_507735.1| ribonuclease HII [Ehrlichia chaffeensis str. Arkansas]
 gi|123492872|sp|Q2GFP8|RNH2_EHRCR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|88600078|gb|ABD45547.1| ribonuclease HII [Ehrlichia chaffeensis str. Arkansas]
          Length = 209

 Score =  210 bits (536), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 85/200 (42%), Positives = 116/200 (58%), Gaps = 6/200 (3%)

Query: 9   RPHFELEAM---VREKNMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKI 63
            P F +E     +       + G+DEVG G+LAGPVV AA+      N+I + I DSKK+
Sbjct: 1   MPDFSIENEISKLINNKHCTIVGVDEVGYGSLAGPVVSAAVFFPKHDNHITYNIQDSKKL 60

Query: 64  SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
           + KKR E+Y  IT     SI  A    ID++NI  AT  A+  A+  L       ++DG 
Sbjct: 61  TPKKRLEIYNIITPMVKWSIGLAEVHEIDQYNILNATHIAMQRALRGLNSNIDYVIVDGN 120

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +PE LP  A AV+ GD+IS+SIAAASIIAKVTRD+LM   H ++P Y ++ + GY T  
Sbjct: 121 KVPE-LPWNAKAVVDGDNISISIAAASIIAKVTRDKLMETLHIQFPQYNWNKNKGYGTKH 179

Query: 184 HQQVIKEKGPSCIHRLTFRP 203
           H + + + G +  HR TF P
Sbjct: 180 HLESLHKYGKTIHHRNTFAP 199


>gi|261417089|ref|YP_003250772.1| Ribonuclease H [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261373545|gb|ACX76290.1| Ribonuclease H [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326679|gb|ADL25880.1| ribonuclease HII [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 247

 Score =  210 bits (536), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 110/222 (49%), Gaps = 34/222 (15%)

Query: 16  AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
                +N   V GIDEVGRG LAGPVV  A +L   +    +NDSKK+S  KRE +++ +
Sbjct: 23  RKFAAENSAIVVGIDEVGRGPLAGPVVACAAVLKSPDALLTLNDSKKLSRPKREAMFDAV 82

Query: 76  T-SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ---------------------V 113
             + A  +I+SAS + ID+ NI +A   A+  A++ L                      V
Sbjct: 83  KDACACYAIASASVEEIDEINILEADFLAMRRALQALGFPGLNESAPEIPIEVKGSLNDV 142

Query: 114 IPRSAL-----------IDGRSIPEDLPCQ-AFAVIKGDSISLSIAAASIIAKVTRDRLM 161
           +P S             +DG      +P +    ++KGD    SI+AASI+AKV RDR M
Sbjct: 143 MPDSVPASALSSNVLIAVDGNLKIRGVPAENQMPIVKGDGRIASISAASILAKVFRDRYM 202

Query: 162 RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
               + YP YGFD H GY T  H   I+ +G S  HR +F P
Sbjct: 203 DKLEELYPGYGFDKHAGYGTKAHLDAIRRQGFSPAHRKSFHP 244


>gi|319955897|ref|YP_004167160.1| rnase hii [Nitratifractor salsuginis DSM 16511]
 gi|319418301|gb|ADV45411.1| RNase HII [Nitratifractor salsuginis DSM 16511]
          Length = 205

 Score =  210 bits (536), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 71/190 (37%), Positives = 104/190 (54%), Gaps = 7/190 (3%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
           E+  + + GIDE GRG LAGP+VVA +IL       G+ DSK++S ++RE+LY +I   +
Sbjct: 16  EEEAFTLCGIDEAGRGPLAGPLVVAGVIL--LRRINGLQDSKRLSAQEREKLYGRIVERS 73

Query: 80  IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA-VIK 138
              +       ID   I +    A+   VE L       L DG S          A ++K
Sbjct: 74  RYHLVIIEASRIDDWGISRCLRKALEEIVEVLGGEGVHFLFDGNS---RYGVPGIATMVK 130

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
            D     ++AASI+AKVTRDR+M    ++YP+YGF+ H GY TA+H + I+  G   IHR
Sbjct: 131 ADGKVKEVSAASILAKVTRDRIMEALAREYPEYGFEEHKGYGTARHLEAIERFGCCPIHR 190

Query: 199 LTFRPLRNLS 208
            +F+ ++  S
Sbjct: 191 RSFQ-VKKFS 199


>gi|325673470|ref|ZP_08153161.1| ribonuclease HII [Rhodococcus equi ATCC 33707]
 gi|325555491|gb|EGD25162.1| ribonuclease HII [Rhodococcus equi ATCC 33707]
          Length = 212

 Score =  210 bits (536), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 76/194 (39%), Positives = 111/194 (57%), Gaps = 4/194 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREEL 71
           +E+ +    + PVAG+DE GRGA AGP+VVAA +L   P+     ++DSKK++ K R+EL
Sbjct: 1   MESALVRSGLGPVAGVDEAGRGACAGPLVVAACVLGSKPHAALARLDDSKKLTEKVRDEL 60

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+  S+       +D+  +H A ++ +  AV  L V P   L DG  +P  LP
Sbjct: 61  FPVIKRLAVAWSVVEIPAAEVDRIGVHVANIEGMRRAVAGLTVAPGYVLTDGFRVP-GLP 119

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD+ +  IAAAS++AKV+RDR M     + P YGF  H GY TA H   + E
Sbjct: 120 APSLPVIGGDASAACIAAASVLAKVSRDRTMVALDDELPGYGFAGHKGYSTAVHTAALNE 179

Query: 191 KGPSCIHRLTFRPL 204
            GP   HR+++  +
Sbjct: 180 LGPCREHRMSYANV 193


>gi|85373281|ref|YP_457343.1| ribonuclease HII [Erythrobacter litoralis HTCC2594]
 gi|122545127|sp|Q2NCP5|RNH2_ERYLH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|84786364|gb|ABC62546.1| ribonuclease HII [Erythrobacter litoralis HTCC2594]
          Length = 212

 Score =  210 bits (536), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 72/196 (36%), Positives = 104/196 (53%), Gaps = 23/196 (11%)

Query: 24  WPVAGIDEVGRGALAGP-------VVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76
             V G+DE GRG LAGP       +         +  P G++DSKK++ K+R  L E I 
Sbjct: 18  GCVFGVDEAGRGPLAGPVVAAAVVL--------GDAYPKGLDDSKKLTAKRRAVLDEDIR 69

Query: 77  SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI----PRSALIDGRSIPED---- 128
            +    +     + ID  NI  AT+ A+  AV+ L       P   LIDG   P      
Sbjct: 70  KTCGWGVGVVDVEEIDTLNILGATMRAMSLAVQGLAAKLGGDPDMVLIDGNLTPHGRCDL 129

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
              +A A+I GD I  +I+AASI+AK  RDR+M  A + YP+YG+ S+ GY TA+H + +
Sbjct: 130 WQWEAQAIIGGDGIEPAISAASIVAKEWRDRIMTEAAQDYPEYGWLSNKGYGTAQHLEAL 189

Query: 189 KEKGPSCIHRLTFRPL 204
           +  GP+ +HR +F P+
Sbjct: 190 RLHGPTPLHRRSFAPV 205


>gi|300780923|ref|ZP_07090777.1| ribonuclease H [Corynebacterium genitalium ATCC 33030]
 gi|300532630|gb|EFK53691.1| ribonuclease H [Corynebacterium genitalium ATCC 33030]
          Length = 215

 Score =  210 bits (536), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 76/194 (39%), Positives = 106/194 (54%), Gaps = 4/194 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREEL 71
            E  + +  + PVAGIDE GRGA  GPV +AA +L    IP   G+ DSKK++  KR  L
Sbjct: 10  YEVALSKAGLGPVAGIDEAGRGACFGPVTIAACVLPDKPIPALDGLTDSKKLTPAKRASL 69

Query: 72  YEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I +S+    +       +D+  IH A LD    AV  L + P   L+D   +P  L 
Sbjct: 70  YDAILTSSDAHCVVHIPAAEVDRRGIHNANLDGARLAVAGLGLAPGFTLVDAFRVP-GLT 128

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +I GD  +  IAAAS++AKV+RDRL+    + +PDYG +SH GY TA H   ++ 
Sbjct: 129 MPQLPIIGGDYTARCIAAASVLAKVSRDRLITKMAETFPDYGLESHKGYGTAAHMDAVRR 188

Query: 191 KGPSCIHRLTFRPL 204
            G S  HR T+  +
Sbjct: 189 HGASAEHRYTYANV 202


>gi|310831397|ref|YP_003970040.1| putative ribonuclease HII [Cafeteria roenbergensis virus BV-PW1]
 gi|309386581|gb|ADO67441.1| putative ribonuclease HII [Cafeteria roenbergensis virus BV-PW1]
          Length = 202

 Score =  210 bits (536), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 65/191 (34%), Positives = 99/191 (51%), Gaps = 10/191 (5%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86
            G+DE GRG   GPV   A++   N     + DSKK++ KKR  LY  I    +  I  A
Sbjct: 11  VGLDEAGRGCWWGPVTAGAVMWPENLTHPYLTDSKKLTEKKRNVLYTWILEKCLCGIGEA 70

Query: 87  SHQYIDKHNIHKATLDAIYHAVENLQ-------VIPRSALIDG-RSIPEDLPCQAFAVIK 138
           +   ID   I +AT  A+  A++NL+       +   + +IDG     +D P    +++K
Sbjct: 71  TSYEIDTIGILEATKLAMNRAIKNLEKNITMSSIKINNLIIDGINWKEKDFPYPITSIVK 130

Query: 139 GDSISLSIAAASIIAKVTRDRLM--RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           GD    SIAAAS++AKV RD     +     +  Y  D H GY T  H++++ + GP+  
Sbjct: 131 GDGKYYSIAAASVLAKVYRDNYCYKKALEDNFKTYLLDKHKGYGTKIHKEMLDKYGPTEE 190

Query: 197 HRLTFRPLRNL 207
           HR +F+P+ N+
Sbjct: 191 HRHSFKPICNM 201


>gi|216264047|ref|ZP_03436041.1| ribonuclease HII [Borrelia afzelii ACA-1]
 gi|215980091|gb|EEC20913.1| ribonuclease HII [Borrelia afzelii ACA-1]
          Length = 181

 Score =  210 bits (536), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 74/180 (41%), Positives = 107/180 (59%), Gaps = 1/180 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           + GIDEVGRG + GP++ AA++     N    ++DSKK++ +KRE L   I  ++  + +
Sbjct: 2   ICGIDEVGRGCIFGPILSAAVVFKKKPNFIKELDDSKKLTKEKREYLSSLILENSYYAFA 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S+  I+K NIH A+L A+  A ENL++      IDG+ +P+       A+IKGDSI  
Sbjct: 62  EISNITIEKINIHNASLLAMQTAYENLKLNCNLVFIDGKFVPKISAKNVKAIIKGDSIID 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I AASIIAKV RD+LM    K YP Y    + GYPT +H+  IK+ G   +HR  F+ +
Sbjct: 122 EIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFKLI 181


>gi|51598308|ref|YP_072496.1| ribonuclease HII [Borrelia garinii PBi]
 gi|73917600|sp|Q662W7|RNH2_BORGA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|51572879|gb|AAU06904.1| ribonuclease H [Borrelia garinii PBi]
          Length = 181

 Score =  210 bits (536), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 75/180 (41%), Positives = 106/180 (58%), Gaps = 1/180 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           + GIDEVGRG + GPV+ AA++     N    ++DSKK+  +KRE L   I  ++  + +
Sbjct: 2   ICGIDEVGRGCIFGPVLSAAVVFKKKPNFIKELDDSKKLKKEKREYLSSLILENSYYAFA 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S+  I+K NIH ATL A+  A ENL++      +DG+ +P+       A+IKGDSI  
Sbjct: 62  EISNIIIEKINIHNATLLAMQTAYENLKLNCSLVFVDGKFVPKITAKTVKAIIKGDSIID 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I AASIIAKV RD+LM    K YP Y    + GYPT +H+  IK+ G   +HR  F+ +
Sbjct: 122 EIKAASIIAKVKRDKLMDEYDKIYPLYLLRKNKGYPTKEHKNAIKKYGVLSLHRRNFKLI 181


>gi|311739721|ref|ZP_07713556.1| ribonuclease HII [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305537|gb|EFQ81605.1| ribonuclease HII [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 213

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 71/201 (35%), Positives = 103/201 (51%), Gaps = 4/201 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHK 66
           +     E  + +  + PVAG+DE GRGA  GP+ +AA ++    I     + DSKK++ K
Sbjct: 5   KQRRTYEVALSKAGLGPVAGVDEAGRGACCGPITIAACVMPDRPIKELAQLTDSKKLTPK 64

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +RE+L+  I   A+  S+       IDK  I  A +  +  AV  L+  P   L D   I
Sbjct: 65  QREKLFPLIKDKAVDWSVVHIGAGDIDKRGIQHANISGMRRAVARLEARPGYVLTDALFI 124

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  L      +I GD+ +  IAAAS++AKV+RD LM     +YP YG  SH GY T  H+
Sbjct: 125 P-GLTQPHLPIIGGDAAARCIAAASVLAKVSRDHLMHELDVRYPGYGLASHKGYGTKAHE 183

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
             I   G    HR+++  +R 
Sbjct: 184 AAIAALGACPEHRMSYENVRR 204


>gi|319779558|ref|YP_004130471.1| Ribonuclease HII [Taylorella equigenitalis MCE9]
 gi|317109582|gb|ADU92328.1| Ribonuclease HII [Taylorella equigenitalis MCE9]
          Length = 212

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 74/203 (36%), Positives = 113/203 (55%), Gaps = 21/203 (10%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            V G+DE GRG LAG V   A++L  +    G+ DSKK+S KKREEL   I  +++   +
Sbjct: 5   LVIGVDEAGRGPLAGDVFAGAVLLG-SPEIVGLTDSKKLSPKKREELEVLIKGASVSYFV 63

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVEN-LQVIP-------RSALIDGRSIP--------- 126
           + ++ + ID  NI  ATL A+  A++  L  +P          +IDG  IP         
Sbjct: 64  ACSTVEEIDSLNILNATLLAMNRAIDGVLGALPPKYQSSQIKVIIDGNQIPNPLKREGIF 123

Query: 127 --EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
             +    +  + IKGD ++ +++AASI+AK  RDR +   H+  P Y F+ H GY TA H
Sbjct: 124 DYQGFKIEVKSQIKGDLLTPTVSAASILAKTARDRHILQLHESVPQYKFNEHKGYGTALH 183

Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207
            ++I++ GPS  HR +F P+++L
Sbjct: 184 LEMIRKYGPSIFHRKSFNPVKSL 206


>gi|21224156|ref|NP_629935.1| ribonuclease HII [Streptomyces coelicolor A3(2)]
 gi|7227921|sp|O69989|RNH2_STRCO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|3036877|emb|CAA18510.1| probable ribonuclease HII [Streptomyces coelicolor A3(2)]
          Length = 233

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/202 (35%), Positives = 111/202 (54%), Gaps = 2/202 (0%)

Query: 8   ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           E P   +E  +R       +AG+DEVGRGA AGPV V A I      P G+ DSK ++ K
Sbjct: 4   EPPTHTVERSLRATTGAKIIAGVDEVGRGAWAGPVTVCAAITGLRRPPVGLTDSKLLTIK 63

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R EL  ++ +     ++  AS + ID   +  A   A   A+  L V P + ++DG+  
Sbjct: 64  RRTELEVELRTWVTSYALGHASPEEIDAMGMTAALRLAAVRALGTLPVRPDAVILDGKHD 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
               P +   VIKGD   +++AAAS++AKV RD++M      + D+GF  + GYP+  H+
Sbjct: 124 YLGAPWRVRTVIKGDQSCIAVAAASVLAKVQRDKMMAELGVDHADFGFADNAGYPSPVHK 183

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
             ++E+GP+  HRL++  L  L
Sbjct: 184 AALEERGPTPHHRLSWAYLDAL 205


>gi|86748206|ref|YP_484702.1| ribonuclease HII [Rhodopseudomonas palustris HaA2]
 gi|123293064|sp|Q2J169|RNH2_RHOP2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|86571234|gb|ABD05791.1| RNase HII [Rhodopseudomonas palustris HaA2]
          Length = 284

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 93/195 (47%), Positives = 128/195 (65%), Gaps = 1/195 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E  + ++ +WPVAG DE GRG LAGPVV AA++LDP  +P G++DSK++S +KRE
Sbjct: 57  PSFRRERALIKRGIWPVAGCDEAGRGPLAGPVVAAAVVLDPKRVPKGLDDSKRLSAEKRE 116

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           EL+E+I +SA +S++ AS + I++ NI +A+L A+  AV  L  +P+   +DGR      
Sbjct: 117 ELFEEICASAQVSVACASPERINRDNILRASLWALTRAVHALPDLPQHVFVDGRD-RLAT 175

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C++ AVI GD +  SIAAASIIAKVTRDRLM    +  P YGF+ H GY   +H   + 
Sbjct: 176 RCESEAVIGGDGLIASIAAASIIAKVTRDRLMCRLAQDCPGYGFEQHKGYGVPEHLAALA 235

Query: 190 EKGPSCIHRLTFRPL 204
             GPS  HR  F P+
Sbjct: 236 RLGPSVHHRRFFAPV 250


>gi|261855823|ref|YP_003263106.1| ribonuclease H [Halothiobacillus neapolitanus c2]
 gi|261836292|gb|ACX96059.1| Ribonuclease H [Halothiobacillus neapolitanus c2]
          Length = 216

 Score =  209 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 84/215 (39%), Positives = 123/215 (57%), Gaps = 18/215 (8%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           +P+ P FE++           AG+DE GRG LAGPVV AAI+L P++   G+NDSKK++ 
Sbjct: 1   MPQLPLFEMQTP-----GLIYAGVDEAGRGPLAGPVVAAAIVLYPDDPIVGVNDSKKLTE 55

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL-------QVIPRS 117
           ++R +L+++IT  A   +I+ A+   ID  NI +A+L A+  AV  +             
Sbjct: 56  RQRVKLFDEITRRAQSFAIAEATVHEIDTINILQASLLAMRRAVMAVYDQMKTQGQTLGR 115

Query: 118 ALIDGRSIPEDLP-----CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172
             +DG   P+         +  A+I GD+   +IA+ASI+AKVTRDRLM    K YP Y 
Sbjct: 116 IHVDGNRCPDLNDPDAGFMECHALIGGDARDAAIASASILAKVTRDRLMLDMDKLYPQYE 175

Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           F  H GYPTA+H+ ++ E G    HR +F P+R +
Sbjct: 176 FAKHKGYPTARHRDLLIEFGACPEHRSSFAPVRAI 210


>gi|110598302|ref|ZP_01386577.1| Ribonuclease H [Chlorobium ferrooxidans DSM 13031]
 gi|110340110|gb|EAT58610.1| Ribonuclease H [Chlorobium ferrooxidans DSM 13031]
          Length = 205

 Score =  209 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 74/210 (35%), Positives = 114/210 (54%), Gaps = 24/210 (11%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-------------DPNNIPFGIND 59
             E  + + +   V GIDE GRG LAGP                        +I   +ND
Sbjct: 4   SYEWPLWQTS-EFVCGIDEAGRGPLAGP--------VVAAAVVFSRWFSPEGSILEKLND 54

Query: 60  SKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118
           SKK+S + REEL   I ++A+  +++    + ID+ NI +AT+ A+  ++E L ++P   
Sbjct: 55  SKKLSSRVREELAPAIKAAALYWAVTEIEPEIIDRINIFQATMLAMNRSIEALGMLPELL 114

Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
           L+DG      LP     ++KGD+   SIAAAS++AK  RD +M    + +P+YGFD H G
Sbjct: 115 LVDGNRFRPHLPIPYETIVKGDAKVFSIAAASVLAKTRRDEIMTACSRSWPEYGFDRHFG 174

Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPLRNLS 208
           Y TA+H + I++ G   +HR++FR L+ L 
Sbjct: 175 YATAEHVRAIRQYGRCPLHRVSFR-LKELG 203


>gi|85707870|ref|ZP_01038936.1| ribonuclease HII [Erythrobacter sp. NAP1]
 gi|85689404|gb|EAQ29407.1| ribonuclease HII [Erythrobacter sp. NAP1]
          Length = 206

 Score =  209 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 76/193 (39%), Positives = 113/193 (58%), Gaps = 9/193 (4%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
            + G+DE GRG LAGPVV AA++L    +P GI DSKK+S K+R  L E++ +    +++
Sbjct: 14  IIIGVDEAGRGPLAGPVVAAAVVLGEG-LPAGIGDSKKLSAKRRAALDEELRACCKWAVA 72

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVI----PRSALIDGRSIPE----DLPCQAFAV 136
                 ID+ NI +AT++A+   V +L       P   LIDG   PE    +    A A+
Sbjct: 73  VVEADEIDRLNIFQATMEAMTRCVRDLAAQLPGSPDIVLIDGNQTPERRCAEWRWPARAI 132

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           + GD I  SI AASIIAK  RDR+M  A + +P YG++ + GY T +H + ++  GP+ +
Sbjct: 133 VGGDGIEPSIGAASIIAKEWRDRMMIAAARAHPAYGWERNKGYGTKEHMEALRLHGPTSL 192

Query: 197 HRLTFRPLRNLSV 209
           HR +F P+   S+
Sbjct: 193 HRQSFAPVAQASL 205


>gi|218458163|ref|ZP_03498254.1| ribonuclease HII [Rhizobium etli Kim 5]
          Length = 161

 Score =  209 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 85/161 (52%), Positives = 113/161 (70%)

Query: 4   NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           ++ P  P F LE   R+   WPVAG DE GRG LAGPVV AA+ILDP  IP G+NDSK++
Sbjct: 1   DTAPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDSKQL 60

Query: 64  SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
           S ++REEL+ +I ++A +SI+S+S   ID+ +I KA+LDA+  A+ +L V     L DG 
Sbjct: 61  SAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAVPASYVLTDGL 120

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA 164
            +P  L C   AV+KGD+ S+SIAAASI+AKVTRDR+M  A
Sbjct: 121 DVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMARA 161


>gi|310779317|ref|YP_003967650.1| Ribonuclease H [Ilyobacter polytropus DSM 2926]
 gi|309748640|gb|ADO83302.1| Ribonuclease H [Ilyobacter polytropus DSM 2926]
          Length = 203

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 80/194 (41%), Positives = 112/194 (57%), Gaps = 11/194 (5%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREE 70
           F++E          + GIDE GRG LAGPVV AA+ +      F  INDSKK+S KKRE 
Sbjct: 7   FDME-------YGDIIGIDEAGRGPLAGPVVAAAVKIKKYVKEFDMINDSKKLSEKKREL 59

Query: 71  LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPE 127
           L++ I  +  + +   + + ID +NI  AT   +  A+E++    +   + L+DG     
Sbjct: 60  LFDVIIENCHVGVGVVNEKDIDNYNILNATFMGMIKAIEDISEEGISFENVLVDGNHKIR 119

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           +   +   +IKGD  SL+IAAASIIAKVTRDR+M    +KYP+YGF  H GY T +H++ 
Sbjct: 120 EYNNRQTPIIKGDGKSLAIAAASIIAKVTRDRIMVKYDEKYPEYGFAKHKGYGTKQHREA 179

Query: 188 IKEKGPSCIHRLTF 201
           I + G    HR TF
Sbjct: 180 ILKNGACQCHRKTF 193


>gi|227504791|ref|ZP_03934840.1| ribonuclease HII [Corynebacterium striatum ATCC 6940]
 gi|227198641|gb|EEI78689.1| ribonuclease HII [Corynebacterium striatum ATCC 6940]
          Length = 213

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 74/196 (37%), Positives = 102/196 (52%), Gaps = 4/196 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREEL 71
            E  + +  + PVAG+DE GRGA  GP+ +AA IL    IP    + DSKK+S   RE L
Sbjct: 10  YEVALSKAGLGPVAGVDEAGRGACCGPITIAACILPDKIIPELDKLTDSKKLSPATRERL 69

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+  S+     + IDK  I  A +  +  AV  L V P   L D   +P  +P
Sbjct: 70  FPIIKDKAVAWSVVHIDARDIDKRGIQHANVSGMRRAVARLDVRPHYVLSDALKVP-GMP 128

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +I GD+ +  IAAAS++AKV+RD +M      YP YG   H GY TA HQ  I +
Sbjct: 129 APQLPIIGGDAAARCIAAASVLAKVSRDHIMDELDVAYPGYGLAGHKGYGTAAHQAAIVK 188

Query: 191 KGPSCIHRLTFRPLRN 206
            G +  HR+ +  + N
Sbjct: 189 LGATPEHRMGYANVAN 204


>gi|328948714|ref|YP_004366051.1| ribonuclease H [Treponema succinifaciens DSM 2489]
 gi|328449038|gb|AEB14754.1| Ribonuclease H [Treponema succinifaciens DSM 2489]
          Length = 199

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/198 (36%), Positives = 103/198 (52%), Gaps = 18/198 (9%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82
           M  + GIDE GRG LAGPV    ++L  +     +NDSKK+S KKRE   + I   +   
Sbjct: 1   MDFLVGIDEAGRGPLAGPVTAGCVLLPIDFPVEILNDSKKLSEKKREAASDVIREKSCWG 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIP-----------------RSALIDGRSI 125
           I   S + ID+ NI +A   A+  A + +++                      ++DG  +
Sbjct: 61  IGIVSEKIIDEINILQADFKAMKIAFDMMRMKLPAWCEKNKFNFEQCKNSMQIIVDGNML 120

Query: 126 P-EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           P  D      AVIK DS    + AASI+AKV RD++M    K YP+YG+  H GYPT  H
Sbjct: 121 PFTDKNLDIKAVIKADSKFPCVMAASILAKVQRDKIMIDYDKLYPEYGYAKHKGYPTLAH 180

Query: 185 QQVIKEKGPSCIHRLTFR 202
           +++ +  GPS I RL+F+
Sbjct: 181 KEICRRLGPSPIQRLSFK 198


>gi|68171965|ref|ZP_00545273.1| Ribonuclease H [Ehrlichia chaffeensis str. Sapulpa]
 gi|67998612|gb|EAM85357.1| Ribonuclease H [Ehrlichia chaffeensis str. Sapulpa]
          Length = 209

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 85/200 (42%), Positives = 116/200 (58%), Gaps = 6/200 (3%)

Query: 9   RPHFELEAM---VREKNMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKI 63
            P F +E     +       + G+DEVG G+LAGPVV AA+      N+I + I DSKK+
Sbjct: 1   MPDFSIENEISKLINNKHCTIVGVDEVGYGSLAGPVVSAAVFFPKHDNHITYNIQDSKKL 60

Query: 64  SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
           + KKR E+Y  IT     SI  A    ID++NI  AT  A+  A+  L       ++DG 
Sbjct: 61  TPKKRLEIYNIITPMVKWSIGLAEVHEIDQYNILNATHIAMQRALRGLNSNINYVIVDGN 120

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +PE LP  A AV+ GD+IS+SIAAASIIAKVTRD+LM   H ++P Y ++ + GY T  
Sbjct: 121 KVPE-LPWNAKAVVDGDNISISIAAASIIAKVTRDKLMETLHIQFPQYNWNKNKGYGTKH 179

Query: 184 HQQVIKEKGPSCIHRLTFRP 203
           H + + + G +  HR TF P
Sbjct: 180 HLESLHKYGKTIHHRNTFAP 199


>gi|306836387|ref|ZP_07469365.1| ribonuclease HII [Corynebacterium accolens ATCC 49726]
 gi|304567747|gb|EFM43334.1| ribonuclease HII [Corynebacterium accolens ATCC 49726]
          Length = 213

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 68/196 (34%), Positives = 100/196 (51%), Gaps = 4/196 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREEL 71
            E  +    + PVAG+DE GRGA  GP+ +AA IL          + DSKK++ ++RE+L
Sbjct: 10  FEVALARAGLGPVAGVDEAGRGACCGPITIAACILPERIVGELDTLTDSKKLTPRQREKL 69

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+  S+       IDK  I  A    +  AV  L+  P   L D   IP  L 
Sbjct: 70  FPIIKDKAVDWSVVHIGAGDIDKRGIQHANTSGMRRAVARLEQRPGYVLSDALFIP-GLT 128

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                ++ GD+ +  IAAAS++AKV+RD LM    +++P YG   H GY T  H+  I  
Sbjct: 129 QPHLPIVGGDAAARCIAAASVLAKVSRDHLMLDLDERFPGYGLAGHKGYGTKAHEAAIAA 188

Query: 191 KGPSCIHRLTFRPLRN 206
            G S  HR+++  ++ 
Sbjct: 189 LGASPEHRMSYSNVQR 204


>gi|33866676|ref|NP_898235.1| ribonuclease HII [Synechococcus sp. WH 8102]
 gi|33633454|emb|CAE08659.1| ribonuclease HII [Synechococcus sp. WH 8102]
          Length = 239

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 69/181 (38%), Positives = 103/181 (56%), Gaps = 5/181 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-I 80
           VAG+DEVGRG L GPV   A++L+  N       G+ DSK++S ++R +L   I   A  
Sbjct: 53  VAGVDEVGRGCLFGPVFAGAVVLEAANASRLQQEGLTDSKRLSARRRGDLVPLIEHEAEA 112

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             +  +S + ID+  I  AT  A+  A++ L   P   L+DG         +  +++ GD
Sbjct: 113 WGLGQSSTREIDRLGIRPATELAMLRALQRLPNRPELVLVDGNLPLRPWTGEQRSIVAGD 172

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
             SL+IAAAS+IAK  RD LM+   +++P YG + H GY TA H+  + + GPS +HR +
Sbjct: 173 QHSLAIAAASVIAKQCRDALMQRLSQRFPGYGLERHAGYGTALHRAALLDLGPSALHRRS 232

Query: 201 F 201
           F
Sbjct: 233 F 233


>gi|148238709|ref|YP_001224096.1| ribonuclease HII [Synechococcus sp. WH 7803]
 gi|189043669|sp|A5GIN4|RNH2_SYNPW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|147847248|emb|CAK22799.1| Ribonuclease HII [Synechococcus sp. WH 7803]
          Length = 194

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/180 (40%), Positives = 102/180 (56%), Gaps = 5/180 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSSA-II 81
            G+DEVGRG L GPV  AA+ L    D      G+ DSK +S K+R +L   I + A   
Sbjct: 3   VGVDEVGRGCLFGPVFAAAVSLTGAADAELTALGLTDSKALSAKRRADLVPHIQAKASAW 62

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           ++   S + ID H I  AT  A+  A++ L + P   L+DG       P     +++GDS
Sbjct: 63  ALGQGSAREIDAHGIRVATELAMLRALQKLPIQPELVLVDGVLPLRLWPGAQRTIVRGDS 122

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
              SIAAAS++AKV RD LM    +++P+YGF+ H GY TA H+Q +   GP+ +HR +F
Sbjct: 123 QEASIAAASVLAKVARDGLMCRLAERFPEYGFERHAGYGTALHRQALITSGPTALHRKSF 182


>gi|227503370|ref|ZP_03933419.1| ribonuclease HII [Corynebacterium accolens ATCC 49725]
 gi|227075873|gb|EEI13836.1| ribonuclease HII [Corynebacterium accolens ATCC 49725]
          Length = 213

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 68/196 (34%), Positives = 101/196 (51%), Gaps = 4/196 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREEL 71
            E  + +  + PVAG+DE GRGA  GP+ +AA IL          + DSKK++ ++RE+L
Sbjct: 10  FEVALAKAGLGPVAGVDEAGRGACCGPITIAACILPERIVGELDTLTDSKKLTPRQREKL 69

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  I   A+  S+       IDK  I  A    +  AV  L+  P   L D   IP  L 
Sbjct: 70  FPIIKDKAVDWSVVHIGAGDIDKRGIQHANTSGMRRAVARLEQRPGYVLSDALFIP-GLT 128

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                ++ GD+ +  IAAAS++AKV+RD LM    +++P YG   H GY T  H+  I  
Sbjct: 129 QPHLPIVGGDAAARCIAAASVLAKVSRDHLMLDLDERFPGYGLAGHKGYGTKAHEAAIAA 188

Query: 191 KGPSCIHRLTFRPLRN 206
            G S  HR+++  ++ 
Sbjct: 189 LGASPEHRMSYSNVQR 204


>gi|71892067|ref|YP_277797.1| ribonuclease HII [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|97182291|sp|Q493B8|RNH2_BLOPB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|71796173|gb|AAZ40924.1| ribonuclease HII [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 217

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 82/204 (40%), Positives = 112/204 (54%), Gaps = 1/204 (0%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64
           SI +  + E+   +  K    +AG+DE G G+L G V+ AA+IL       G+ DSK ++
Sbjct: 6   SIVQVKNNEIPKTLSIKKFKLIAGVDESGCGSLVGSVIAAAVILHSIQPISGLADSKTLN 65

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
             KR  LY+ I  +A+  SI  A    ID+ NI +A L A+  AV NL V P   LIDG 
Sbjct: 66  KNKRLNLYKNIIKNALAWSIGYADVTEIDRSNILEARLLAMKRAVHNLSVKPDLILIDGN 125

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
             P           KGD+    I+AASIIAKVTRD+ M I  K+YP YGF  + GYPT  
Sbjct: 126 RSPGFTEIPYQCFNKGDARIAIISAASIIAKVTRDQDMIILDKQYPKYGFAQNKGYPTFF 185

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
           H + +   GP   HR +F P++++
Sbjct: 186 HLKQLALYGPISQHRKSFAPVKHV 209


>gi|194332870|ref|YP_002014730.1| ribonuclease HII [Prosthecochloris aestuarii DSM 271]
 gi|194310688|gb|ACF45083.1| Ribonuclease H [Prosthecochloris aestuarii DSM 271]
          Length = 206

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 86/202 (42%), Positives = 117/202 (57%), Gaps = 10/202 (4%)

Query: 16  AMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKK 67
             + E+  WP    V GIDE GRG LAGPVV AA++   +  P G    +NDSK I  ++
Sbjct: 4   TTLYEQQFWPDLQRVCGIDEAGRGPLAGPVVAAAVVFPRHFRPHGFISTLNDSKTIPPRR 63

Query: 68  REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R+EL + I   A   +I+   H  ID+ NI +AT+ A+ +A  +L+  P   LIDG    
Sbjct: 64  RKELAQAIIQEAEDYAIAEVDHIEIDRINILQATMLAMNNAAGSLEHSPSLLLIDGNRFH 123

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
              P     ++KGD+   SIAAASI+AK  RD +M  A   YP+YGF+ H GYPT +H +
Sbjct: 124 PARPVAFRTIVKGDASVFSIAAASILAKTHRDAIMTEAALLYPEYGFEKHFGYPTREHIE 183

Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208
            I+  G S IHR++FR LR L 
Sbjct: 184 AIRNHGRSPIHRMSFR-LRQLG 204


>gi|256827134|ref|YP_003151093.1| ribonuclease HII [Cryptobacterium curtum DSM 15641]
 gi|256583277|gb|ACU94411.1| ribonuclease HII [Cryptobacterium curtum DSM 15641]
          Length = 262

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 69/179 (38%), Positives = 96/179 (53%), Gaps = 6/179 (3%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
            G+DEVGRG LAGP+ VAA++L        +NDSK++S  +REE+   +   AI  S+  
Sbjct: 76  VGLDEVGRGPLAGPLTVAAVVLPEAPHIAHLNDSKQLSASRREEVAAAVKDVAIAWSVQH 135

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
            + + ID   +      A   AV  +    V     L+DG   P     +    IKGD+ 
Sbjct: 136 IAPEDIDDAGMSACLRRAFGRAVAAVETAGVAIDVVLLDGN--PLHFDVRERTFIKGDAR 193

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
              IAAAS++AKV RD LM  A + YP YGFD + GY +A+H   IK+ G   +HR +F
Sbjct: 194 LACIAAASVVAKVERDELMTQAAQTYPVYGFDRNKGYGSAEHIAAIKKYGLCPLHRRSF 252


>gi|285018804|ref|YP_003376515.1| ribonuclease hII (rnase hII, degrades rna of DNA-rna hybrids)
           protein [Xanthomonas albilineans GPE PC73]
 gi|283474022|emb|CBA16523.1| probable ribonuclease hII (rnase hII, degrades rna of dna-rna
           hybrids) protein [Xanthomonas albilineans]
          Length = 219

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 86/208 (41%), Positives = 121/208 (58%), Gaps = 13/208 (6%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGIND 59
           +F   +P  P   L            AG+DE GRG LAGPV VAA++ DPN     G++D
Sbjct: 10  LFPEPLPPDPDSRL-----------YAGVDEAGRGPLAGPVAVAAVVFDPNQPRINGLDD 58

Query: 60  SKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118
           SK+++  +RE LY +I   A+   +     + ID+ NI++AT+  +  AVE +  +   A
Sbjct: 59  SKQLTAARRETLYPRIIERALAWQVVLIEAEEIDRLNIYQATMLGMRRAVEGVAHVAGFA 118

Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
            IDG  +P+ LPC A A+I GD++  +I AASIIAKVTRDR+M+  H ++P YGFD H G
Sbjct: 119 RIDGNRVPKGLPCPAEALIGGDALDRAIMAASIIAKVTRDRIMQHLHAEHPHYGFDLHKG 178

Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           Y T  H   +   GP   HR +F P+R 
Sbjct: 179 YATPAHLAALAAHGPCPQHRRSFAPVRK 206


>gi|39932283|sp|Q7U4C6|RNH2_SYNPX RecName: Full=Ribonuclease HII; Short=RNase HII
          Length = 224

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 69/181 (38%), Positives = 103/181 (56%), Gaps = 5/181 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-I 80
           VAG+DEVGRG L GPV   A++L+  N       G+ DSK++S ++R +L   I   A  
Sbjct: 38  VAGVDEVGRGCLFGPVFAGAVVLEAANASRLQQEGLTDSKRLSARRRGDLVPLIEHEAEA 97

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             +  +S + ID+  I  AT  A+  A++ L   P   L+DG         +  +++ GD
Sbjct: 98  WGLGQSSTREIDRLGIRPATELAMLRALQRLPNRPELVLVDGNLPLRPWTGEQRSIVAGD 157

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
             SL+IAAAS+IAK  RD LM+   +++P YG + H GY TA H+  + + GPS +HR +
Sbjct: 158 QHSLAIAAASVIAKQCRDALMQRLSQRFPGYGLERHAGYGTALHRAALLDLGPSALHRRS 217

Query: 201 F 201
           F
Sbjct: 218 F 218


>gi|7240593|gb|AAB33869.2| RNase HII [Caulobacter vibrioides]
          Length = 192

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 84/174 (48%), Positives = 103/174 (59%), Gaps = 3/174 (1%)

Query: 33  GRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYI 91
           GR   AGPV   A+ILDP+ IP G+NDSKK+S K R  L E+I   AI   +  AS + I
Sbjct: 7   GRAPWAGPVSAGAVILDPDRIPKGLNDSKKLSAKARAALEEEIKDVAISWCVGLASIEEI 66

Query: 92  DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASI 151
            + NI  A   A+  AVE L V P  AL+DG      LPC    VIKGDS+S SIAAASI
Sbjct: 67  AQLNILHAAGLAMRRAVEGLAVTPAFALVDGN-YAFKLPCPVKTVIKGDSLSCSIAAASI 125

Query: 152 IAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           +AK  RDR+M  A   YP Y F  H GY    H + ++  GPS IHRL + P++
Sbjct: 126 LAKEARDRIMIEADALYPGY-FAGHKGYHAKVHVEGLRRLGPSPIHRLGWAPVK 178


>gi|225552167|ref|ZP_03773107.1| ribonuclease HII [Borrelia sp. SV1]
 gi|225371165|gb|EEH00595.1| ribonuclease HII [Borrelia sp. SV1]
          Length = 181

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 73/180 (40%), Positives = 106/180 (58%), Gaps = 1/180 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAIISIS 84
           + GIDEVGRG + GP++ AA++          ++DSKK+  +KRE L   I  ++  + +
Sbjct: 2   ICGIDEVGRGCIFGPILSAAVVFKKKTSFINELDDSKKLKKEKREYLSSLILENSYYAFA 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S+  I+K NIH A+L A+  A ENL++     L+DG+ +P+       A+IKGDSI  
Sbjct: 62  EISNITIEKINIHNASLLAMQTAYENLKLNCSLVLVDGKFVPKITAKNVKAIIKGDSIID 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I AASIIAKV RD+LM    K YP Y    + GYPT +H+  IK+ G   +HR  F+ +
Sbjct: 122 EIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFKLI 181


>gi|260460365|ref|ZP_05808617.1| Ribonuclease H [Mesorhizobium opportunistum WSM2075]
 gi|259034010|gb|EEW35269.1| Ribonuclease H [Mesorhizobium opportunistum WSM2075]
          Length = 205

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 97/188 (51%), Positives = 131/188 (69%), Gaps = 2/188 (1%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
              +WPVAG+DE GRG LAGPVV AA++LDP NIP G++DSK++SH +RE L+ +I  SA
Sbjct: 2   ADGLWPVAGMDEAGRGPLAGPVVAAAVVLDPANIPEGLDDSKRLSHLQREALFLRILGSA 61

Query: 80  -IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
             +S++S S + ID  NI KA+L+A+  A+  L V P+ AL DGR +P  LPC+  A+IK
Sbjct: 62  QAVSMASISAEGIDGSNILKASLEAMRRALVGLSVRPKLALADGRDVPPGLPCEGRALIK 121

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIH 197
           GD  S SIAAASI+AKV RDR+M         YGF+ H+GY TA+H+  I+  GP + +H
Sbjct: 122 GDQRSQSIAAASIVAKVMRDRMMCGCGSHNGRYGFEVHMGYATARHRTAIEAHGPVARLH 181

Query: 198 RLTFRPLR 205
           R++F P R
Sbjct: 182 RVSFSPFR 189


>gi|85714250|ref|ZP_01045238.1| ribonuclease HII/HIII [Nitrobacter sp. Nb-311A]
 gi|85698697|gb|EAQ36566.1| ribonuclease HII/HIII [Nitrobacter sp. Nb-311A]
          Length = 215

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 90/185 (48%), Positives = 120/185 (64%), Gaps = 1/185 (0%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
            + +WPVAG DE GRG LAGPVV AA++LDPN IP GI+DSK+++  +REEL+E+IT++A
Sbjct: 2   RRGVWPVAGCDEAGRGPLAGPVVAAAVVLDPNRIPEGIDDSKRLTAARREELFEEITATA 61

Query: 80  IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             +I+ A    ID+ NI +A+L A+  AV  L        +DGR   E + C+   VI G
Sbjct: 62  SFAIAVAPIARIDRDNILRASLWALARAVHALPDAAEHVFVDGRDRIE-VACECEPVIGG 120

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D + LSIAAASI+AKVTRDRLM       P YGF++H GY   +H + +   GPS  HR 
Sbjct: 121 DGLVLSIAAASIVAKVTRDRLMCRLALDCPGYGFETHKGYAVPEHLEALGRLGPSPHHRS 180

Query: 200 TFRPL 204
            F P+
Sbjct: 181 FFAPV 185


>gi|304319995|ref|YP_003853638.1| ribonuclease HII [Parvularcula bermudensis HTCC2503]
 gi|303298898|gb|ADM08497.1| ribonuclease HII [Parvularcula bermudensis HTCC2503]
          Length = 209

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 79/199 (39%), Positives = 111/199 (55%), Gaps = 5/199 (2%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREEL 71
           + E    ++   P+ GIDE GRGA AGPVV AA+I  D    P  + DSK +   +RE L
Sbjct: 6   DTELAFADEIGGPICGIDEAGRGAWAGPVVAAAVICGDVKAYPEDLADSKTLREARREHL 65

Query: 72  YEKI--TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           ++ +       + +  AS   ID+  + KA   A+  AV+ L   P  AL+DG   P  L
Sbjct: 66  FDLLSARQDLRVGVGVASVAEIDRMGVGKANWLAMARAVKALPSPPLGALVDGNYAPA-L 124

Query: 130 PCQ-AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           PC     ++KGD   L IAAASI+AKVTRDR+MR    ++P Y + ++ GYP   H+  +
Sbjct: 125 PCPDIRPIVKGDGSCLVIAAASIVAKVTRDRIMRSLCPEHPAYRWSANKGYPAPVHRAAL 184

Query: 189 KEKGPSCIHRLTFRPLRNL 207
           +E GPS  HR +F P+  L
Sbjct: 185 EEIGPSAHHRHSFAPIAAL 203


>gi|229496858|ref|ZP_04390566.1| ribonuclease HII [Porphyromonas endodontalis ATCC 35406]
 gi|229316176|gb|EEN82101.1| ribonuclease HII [Porphyromonas endodontalis ATCC 35406]
          Length = 198

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 73/176 (41%), Positives = 103/176 (58%), Gaps = 1/176 (0%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85
            G DE GRG+L G V  AA+IL  +     +NDSKK++ + R  L  +I   A+  ++  
Sbjct: 14  CGCDEAGRGSLVGDVFAAAVILPEDFCLPELNDSKKLTERTRYRLRPQIEEQAVAWAVGR 73

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
           AS + ID +NI  A+  A++ A+  L + P+  LIDG      L      ++KGDS   S
Sbjct: 74  ASAEEIDTYNILHASFLAMHRAIAALGITPQRLLIDGNHFDPYLDIPHECIVKGDSRLAS 133

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           IAAASI+AK  RD  M  AHK++P YG+D + GYPT  H+Q I++ G S + R TF
Sbjct: 134 IAAASILAKTYRDDYMLAAHKRFPVYGWDRNKGYPTPAHRQAIEKMGHSPLQRFTF 189


>gi|212695498|ref|ZP_03303626.1| hypothetical protein ANHYDRO_00014 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677498|gb|EEB37105.1| hypothetical protein ANHYDRO_00014 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 210

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 83/200 (41%), Positives = 121/200 (60%), Gaps = 9/200 (4%)

Query: 8   ERPHF-----ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62
           ++P +     E++  + E+    +AGIDEVGRG LAGPVV  A+++  ++   G+ DSKK
Sbjct: 2   KKPRYSEFNDEIKNEIHER-YDLIAGIDEVGRGPLAGPVVACAVVMKKDSHIEGVTDSKK 60

Query: 63  ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           +S KK +ELY KI   +I  S   A++  IDK NI +AT  A+  A+E L+  P+  LID
Sbjct: 61  LSKKKMKELYGKIIDDSISYSFGYANNVLIDKINIKEATKLAMKDALERLEKTPQIVLID 120

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
              I  D+  +   ++KGD    +I+ ASI+AKV RD++M    K YP Y F+++ GY T
Sbjct: 121 AERIDTDI--KQLNIVKGDLYEYAISCASILAKVRRDKIMENFSKIYPYYSFETNAGYGT 178

Query: 182 AKHQQVIKEKGPSCIHRLTF 201
            KH Q I++ G   IHR TF
Sbjct: 179 KKHYQGIEKYGECPIHRKTF 198


>gi|162149133|ref|YP_001603594.1| ribonuclease HII [Gluconacetobacter diazotrophicus PAl 5]
 gi|189043600|sp|A9H3E2|RNH2_GLUDA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|161787710|emb|CAP57306.1| Ribonuclease HII [Gluconacetobacter diazotrophicus PAl 5]
          Length = 224

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 80/206 (38%), Positives = 117/206 (56%), Gaps = 10/206 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISH 65
            P +  E     ++   VAG+DEVGRG LAGPVV AA++ D   P  +   ++DSKK++ 
Sbjct: 1   MPDYTREM----QHGGRVAGVDEVGRGPLAGPVVAAAVMFDSGVPRRLVTQLDDSKKLTE 56

Query: 66  KKREELYEKITSS--AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
             R   Y  + ++    I++++AS   I + NI +A   A+  AV  L   P   L+DG 
Sbjct: 57  AARLRAYAALHAARGVHIAVAAASVSEIARLNILRAAFLAMRRAVARLPHQPDMVLVDGN 116

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           + P D  C A  V+ GD  SLSIAAASI+AKV RDRLM     ++P YG++ + GY TA+
Sbjct: 117 AAP-DFGCPAQCVVGGDGESLSIAAASIVAKVVRDRLMARLSCRWPGYGWERNAGYGTAE 175

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLSV 209
           H+  +   G +  HR  F  +R L++
Sbjct: 176 HRAALCRAGTTPHHREAFGLVRQLTL 201


>gi|84498367|ref|ZP_00997164.1| ribonuclease HII [Janibacter sp. HTCC2649]
 gi|84381867|gb|EAP97750.1| ribonuclease HII [Janibacter sp. HTCC2649]
          Length = 261

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 67/220 (30%), Positives = 105/220 (47%), Gaps = 18/220 (8%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGIN 58
           M   S   +P   +E  ++      +AG+DEVGRGALAGPV V  +++D      P G+ 
Sbjct: 1   MPPASRSRKPSLRVERALQRDGYRLLAGMDEVGRGALAGPVSVGVVVIDETCRSAPQGVR 60

Query: 59  DSKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117
           DSK +    RE +  +I   A   ++  AS   ID+  I  A   A   A+ +L V+P  
Sbjct: 61  DSKLLQPSARELMVPRIRRWAFAHAVGHASPAEIDEVGIIAALRLAGRRALASLDVVPDL 120

Query: 118 ALIDGRSIPEDLP---------------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162
            ++DG       P                    +IK D    S+A+AS++AKV RDR+M 
Sbjct: 121 VILDGNHDWLTAPDEVGLLAFTSDDVHTPPVTTMIKADMKCSSVASASVLAKVERDRMMV 180

Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
                +  Y ++ + GY   +H   ++E GP+ +HR ++R
Sbjct: 181 DLAPDHAAYRWELNKGYAAPEHMDALREHGPTELHRRSWR 220


>gi|288573052|ref|ZP_06391409.1| Ribonuclease H [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568793|gb|EFC90350.1| Ribonuclease H [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 194

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 74/181 (40%), Positives = 101/181 (55%), Gaps = 6/181 (3%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS-SAII 81
           AG+DE GRG +AGPVV AA IL           G+ DSKK++  +RE+++  +     I 
Sbjct: 8   AGVDEAGRGPMAGPVVAAAAILTEEQSERLVSAGLRDSKKMTPLRREKVFSLMGELGVIW 67

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENL-QVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
           +  +AS + IDK NI +ATL A+  +VE L   +    L+DG     DL         GD
Sbjct: 68  AAQAASVERIDKINILRATLWAMRRSVERLPSRLFDGVLVDGDKEIPDLIWPQRVCPHGD 127

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
            +   I+AAS++AKV RDR M    + YP YGF SH GY T  H+  ++  GPS IHR +
Sbjct: 128 DVYPQISAASVVAKVLRDRAMVALDRLYPAYGFASHKGYGTKAHRNALEAMGPSPIHRKS 187

Query: 201 F 201
           F
Sbjct: 188 F 188


>gi|295836133|ref|ZP_06823066.1| ribonuclease HII [Streptomyces sp. SPB74]
 gi|197695228|gb|EDY42161.1| ribonuclease HII [Streptomyces sp. SPB74]
          Length = 233

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 74/202 (36%), Positives = 107/202 (52%), Gaps = 2/202 (0%)

Query: 8   ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           E P   +E  +R       VAGIDEVGRGA AGPV V A +      P G+ DSK ++ K
Sbjct: 4   EAPTHSVERSLRATTGAKVVAGIDEVGRGAWAGPVSVCAAVTGLRRAPEGLTDSKLLTPK 63

Query: 67  KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R  L  ++       S+  AS + ID   +  A   A   A++ L V P   ++DG   
Sbjct: 64  RRAALVVELEKWVTAHSLGHASPEEIDALGMTAALRLAAVRALDGLPVRPDWVILDGNHD 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
               P     VIKGD   +S+AAAS++AKV RDRLM     ++ D+ F ++ GYP+  H+
Sbjct: 124 YLGAPWNVRTVIKGDQSCVSVAAASVLAKVARDRLMAELGAQHEDFAFAANAGYPSPAHK 183

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
             + E+GP+  HRL++  L  +
Sbjct: 184 TALAERGPTPYHRLSWSYLDAM 205


>gi|209545123|ref|YP_002277352.1| ribonuclease HII [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532800|gb|ACI52737.1| Ribonuclease H [Gluconacetobacter diazotrophicus PAl 5]
          Length = 224

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 80/206 (38%), Positives = 117/206 (56%), Gaps = 10/206 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISH 65
            P +  E     ++   VAG+DEVGRG LAGPVV AA++ D   P  +   ++DSKK++ 
Sbjct: 1   MPDYTREM----QHGGRVAGVDEVGRGPLAGPVVAAAVMFDSGVPRRLATQLDDSKKLTE 56

Query: 66  KKREELYEKITSS--AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
             R   Y  + ++    I++++AS   I + NI +A   A+  AV  L   P   L+DG 
Sbjct: 57  AARLRAYAALHAARGVHIAVAAASVSEIARLNILRAAFLAMRRAVARLPHQPDMVLVDGN 116

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           + P D  C A  V+ GD  SLSIAAASI+AKV RDRLM     ++P YG++ + GY TA+
Sbjct: 117 AAP-DFGCPAQCVVGGDGESLSIAAASIVAKVVRDRLMARLSCRWPGYGWERNAGYGTAE 175

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLSV 209
           H+  +   G +  HR  F  +R L++
Sbjct: 176 HRAALCRAGTTPHHREAFGLVRQLTL 201


>gi|257455290|ref|ZP_05620525.1| ribonuclease HII [Enhydrobacter aerosaccus SK60]
 gi|257447252|gb|EEV22260.1| ribonuclease HII [Enhydrobacter aerosaccus SK60]
          Length = 240

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 105/222 (47%), Gaps = 40/222 (18%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDP------------------------NNIPFGINDS 60
            + G+DEVGRG L G VVV A+I D                         N+    + DS
Sbjct: 5   FIIGVDEVGRGPLLGDVVVCALIFDKAILSIKEDSLSTDLPTADSVSISHNHPLSALTDS 64

Query: 61  KKISHKKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVEN-----LQVI 114
           KK+S KKRE L+  I  +A    +   S   ID+ NI +ATL  +  AV       L   
Sbjct: 65  KKLSEKKREALFSLIEQTASAHQVVKISASLIDQLNILQATLLGMKQAVAGVMAQMLAQY 124

Query: 115 PRS---ALIDGRSIPEDLPCQA-------FAVIKGDSISLSIAAASIIAKVTRDRLMRIA 164
           P +    ++DG  +P               A++KGD     I+ AS+IAKVTRDR M   
Sbjct: 125 PTATFSVMVDGNKLPVLFDLPNYQQITHEQAIVKGDGKHACISGASVIAKVTRDRDMVAL 184

Query: 165 HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
            K YPDYG + H GYPTA H Q I+  G   +HR +F P++ 
Sbjct: 185 SKLYPDYGIEQHKGYPTAAHIQAIEHYGILPMHRKSFAPIKQ 226


>gi|307297954|ref|ZP_07577758.1| Ribonuclease H [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916040|gb|EFN46423.1| Ribonuclease H [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 241

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 76/191 (39%), Positives = 114/191 (59%), Gaps = 4/191 (2%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76
                +   +AG+DE GRG LAGPVV AA+I+   N   G+ DSK +  K RE L+ +I 
Sbjct: 23  AAYRADHRVIAGVDEAGRGPLAGPVVAAAVIV--LNPVDGVYDSKALCRKTRELLFGQIL 80

Query: 77  SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136
            ++I+ I   S + +D  N+  AT  A+  A+  L   P   ++DG+S+  D+  +   +
Sbjct: 81  ENSIVGIGLCSPEEVDILNVFAATRLAMNRALRILSRKPDYVIVDGKSLRLDISGE--CI 138

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           + GD  S +IA+ASI+AKV RDR+M      YP+YG+ +H GY T  H + +++ GP+  
Sbjct: 139 VGGDRRSAAIASASIVAKVFRDRIMDSLDILYPEYGYRNHKGYCTDMHLRALRKYGPTTW 198

Query: 197 HRLTFRPLRNL 207
           HRLTFRP+R L
Sbjct: 199 HRLTFRPVREL 209


>gi|288922428|ref|ZP_06416616.1| Ribonuclease H [Frankia sp. EUN1f]
 gi|288346231|gb|EFC80572.1| Ribonuclease H [Frankia sp. EUN1f]
          Length = 240

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 80/196 (40%), Positives = 111/196 (56%), Gaps = 4/196 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKRE 69
           F  E  +    + PVAG+DE GRGA AGP+VVAA+IL P        +NDSK ++ + RE
Sbjct: 15  FGYERALTRCGLGPVAGVDEAGRGACAGPLVVAAVILRPGRTRRLARLNDSKLLTERVRE 74

Query: 70  ELYEKITSSAIISISSASHQY-IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           E+Y  + +SA    +       ID+  +H A +  +  AV  L V P   L DG ++ E 
Sbjct: 75  EVYADVQASAAAVATVVVPAADIDRIGVHVANIMGMRRAVARLGVSPGYVLTDGFAV-EG 133

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
              ++ AVIKGD     IAAAS++AKVTRDR+MR  H++Y +Y F  H GY TA H   +
Sbjct: 134 FGVESLAVIKGDRAVGCIAAASVVAKVTRDRIMRCLHEQYAEYDFAQHKGYVTAAHTAAL 193

Query: 189 KEKGPSCIHRLTFRPL 204
              GP   HRL++  +
Sbjct: 194 ARYGPCAEHRLSYVNV 209


>gi|302522312|ref|ZP_07274654.1| ribonuclease HII [Streptomyces sp. SPB78]
 gi|302431207|gb|EFL03023.1| ribonuclease HII [Streptomyces sp. SPB78]
          Length = 233

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 73/202 (36%), Positives = 107/202 (52%), Gaps = 2/202 (0%)

Query: 8   ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           E P   +E  +R       VAGIDEVGRGA AGPV V A +      P G+ DSK ++ K
Sbjct: 4   EAPTHSVERSLRATTGAKVVAGIDEVGRGAWAGPVSVCAAVTGLRRPPEGLTDSKLLTPK 63

Query: 67  KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R  L  ++       S+  AS + ID+  +  A   A   A++ L V P   ++DG   
Sbjct: 64  RRAALVVELEQWVTAHSLGHASPEEIDELGMTAALRLAAGRALDGLPVRPDWVILDGNHD 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
               P     VIKGD   +S+AAAS++AKV RDRLM     ++ D+ F ++ GY +  H+
Sbjct: 124 YLGAPWNVRTVIKGDQSCVSVAAASVLAKVARDRLMAELGAQHEDFAFAANAGYHSPAHK 183

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
             + E+GP+  HRL++  L  +
Sbjct: 184 TALAERGPTPYHRLSWSYLDAM 205


>gi|209966435|ref|YP_002299350.1| ribonucleasehII [Rhodospirillum centenum SW]
 gi|209959901|gb|ACJ00538.1| ribonucleasehII [Rhodospirillum centenum SW]
          Length = 218

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 76/209 (36%), Positives = 107/209 (51%), Gaps = 22/209 (10%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALA------------GPVVVAAIILDPNNIPFG 56
            P   LE          V G+DE GRG LA            GP       L       G
Sbjct: 5   MPDLTLEHRHGHAAGRIVCGVDEAGRGPLAGPVVAAAVVLPGGP-------LPDWC--AG 55

Query: 57  INDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ-VIP 115
           I+DSK++S  +RE L   I + A + +  A    ID  NI +AT  A+  AVE L   +P
Sbjct: 56  IDDSKRLSAARREALCGLIRAQARVGVGIADVAEIDTLNILRATFLAMRRAVEGLGAPLP 115

Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
             AL+DG   P        A++ GD++ LSIAAASI+AKVTRDR+M    +++P YG++ 
Sbjct: 116 AVALVDGNQRPPLPCAIVEAIVDGDALCLSIAAASIVAKVTRDRIMAELAERHPGYGWER 175

Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           + GY TA H++ ++  G +  HR +F P+
Sbjct: 176 NAGYGTAAHREALRRLGATPEHRRSFAPV 204


>gi|223889172|ref|ZP_03623761.1| ribonuclease HII [Borrelia burgdorferi 64b]
 gi|223885421|gb|EEF56522.1| ribonuclease HII [Borrelia burgdorferi 64b]
          Length = 181

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 73/180 (40%), Positives = 107/180 (59%), Gaps = 1/180 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           + GIDEVGRG + GP++ AA++     +    ++DSKK+  +KRE L   I  ++  + +
Sbjct: 2   ICGIDEVGRGCIFGPILSAAVVFKKKPSFIKELDDSKKLKKEKREYLSSLILENSYYAFA 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S+  I+K NIH A+L A+  A ENL++     L+DG+ +P+       A+IKGDSI  
Sbjct: 62  EISNITIEKINIHNASLLAMQTAYENLKLNCSLVLVDGKFVPKITAKNVKAIIKGDSIID 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I AASIIAKV RD+LM    K YP Y    + GYPT +H+  IK+ G   +HR  F+ +
Sbjct: 122 EIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFKLI 181


>gi|323702665|ref|ZP_08114326.1| Ribonuclease H [Desulfotomaculum nigrificans DSM 574]
 gi|323532328|gb|EGB22206.1| Ribonuclease H [Desulfotomaculum nigrificans DSM 574]
          Length = 214

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 78/207 (37%), Positives = 107/207 (51%), Gaps = 27/207 (13%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAG---------PVVVAAIILDPNNIPFGINDSK 61
             ELE  + ++ +  VA  DEVGRG L G         PV           +  G++DSK
Sbjct: 3   SLELEQKLWQQGIKLVAFCDEVGRGPLLGSVVAAAVVLPV---------GLLIEGVDDSK 53

Query: 62  KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL------QVI 114
           K++ KKRE L   I   A+ + I    +  ID+ NI +A+  A+  AV NL      +V 
Sbjct: 54  KLTPKKRETLCRYIYDQALAVGIGEVDNNLIDQINIRQASRLAMKQAVMNLRSKEGHKVT 113

Query: 115 PRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174
           P   LID  SI  DL     ++I GD++S  IAAASI+AKV RD +     + YPDYG  
Sbjct: 114 PDYLLIDAESI--DLDIPQQSIIHGDAVSHGIAAASIVAKVFRDSMCMEWDQMYPDYGIA 171

Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           SH GY T  H + + + G + +HR TF
Sbjct: 172 SHKGYATKAHIEALLKLGATPLHRRTF 198


>gi|255325247|ref|ZP_05366353.1| ribonuclease HII [Corynebacterium tuberculostearicum SK141]
 gi|255297812|gb|EET77123.1| ribonuclease HII [Corynebacterium tuberculostearicum SK141]
          Length = 213

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 71/201 (35%), Positives = 102/201 (50%), Gaps = 4/201 (1%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHK 66
           +     E  + +  + PVAG DE GRGA  GP+ +AA ++    I     + DSKK++ K
Sbjct: 5   KQRRTYEVALSKAGLGPVAGADEAGRGACCGPITIAACVMPDRPIKELAALTDSKKLTPK 64

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +RE+L+  I   A+  S+       IDK  I  A +  +  AV  L+  P   L D   I
Sbjct: 65  QREKLFPLIKDKAVDWSVVHIGAGDIDKRGIQHANISGMRRAVARLETRPGYVLTDALFI 124

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
           P  L      +I GD+ +  IAAAS++AKV+RD LM     +YP YG  SH GY T  H+
Sbjct: 125 P-GLTQPHLPIIGGDAAARCIAAASVLAKVSRDHLMHELDARYPGYGLASHKGYGTKAHE 183

Query: 186 QVIKEKGPSCIHRLTFRPLRN 206
             I   G    HR+++  +R 
Sbjct: 184 AAIAALGACPEHRMSYENVRR 204


>gi|294085233|ref|YP_003551993.1| Ribonuclease H [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664808|gb|ADE39909.1| Ribonuclease H [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 230

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 82/217 (37%), Positives = 115/217 (52%), Gaps = 25/217 (11%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHK 66
           P    E            GIDE GRG  AGPV VAA+ LDP   +++P G++DSKK+   
Sbjct: 12  PDLSREQAFE----GLTIGIDEAGRGPWAGPVTVAAVWLDPKCYDDLPAGLDDSKKLKAD 67

Query: 67  KREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA------- 118
           KR  LY+ +T++  I S+ S     ID  NI + TL A++   E+L      A       
Sbjct: 68  KRAALYDALTTNTHIYSVISVPPAIIDAGNILQVTLQAMHDCAEDLAGQLAQAGYKSALH 127

Query: 119 -LIDGRSIPEDLPCQ--------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
            L+DG  +P  +P            AVI GD +SLSIAAASIIAK TRD +M      YP
Sbjct: 128 MLVDGSIMPP-IPAPPVDGGLFTGEAVIGGDGLSLSIAAASIIAKHTRDGIMTELDAAYP 186

Query: 170 DYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
            YG+ +++GY T  HQ+ +   G +  HR +++P++ 
Sbjct: 187 GYGWATNMGYGTKAHQEGLATLGVTPHHRKSYKPVKR 223


>gi|313901979|ref|ZP_07835395.1| Ribonuclease H [Thermaerobacter subterraneus DSM 13965]
 gi|313467768|gb|EFR63266.1| Ribonuclease H [Thermaerobacter subterraneus DSM 13965]
          Length = 271

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 76/181 (41%), Positives = 106/181 (58%), Gaps = 2/181 (1%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
               VAG+DEVGRG LAGPVV  A+IL       G++DSK++    RE+L  +I   A+ 
Sbjct: 86  GDLQVAGVDEVGRGCLAGPVVAGAVILPAGAHLLGLDDSKRLPPAAREQLAARIRQQAVA 145

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            ++  A+ Q ID  NI  AT  A+  A++ L V+P+  L+DG   P DL     A++ GD
Sbjct: 146 WAVGLATPQEIDALNIWHATRLAMRRALDALAVMPQRVLVDG-RPPGDLGYPLDALVDGD 204

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           +   +IAAAS++AKV RD  M    ++YP YGF  H GY TA H++ +   GP   HR +
Sbjct: 205 ARYAAIAAASVVAKVYRDAWMSRLDREYPAYGFAQHKGYATAAHRRALARYGPCPEHRRS 264

Query: 201 F 201
           F
Sbjct: 265 F 265


>gi|254523247|ref|ZP_05135302.1| ribonuclease HII [Stenotrophomonas sp. SKA14]
 gi|219720838|gb|EED39363.1| ribonuclease HII [Stenotrophomonas sp. SKA14]
          Length = 221

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 113/185 (61%), Gaps = 2/185 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-I 81
             +AG+DE GRG LAGPV VAA++ DP+     G++DSK+++  +RE+L+++I   A+  
Sbjct: 24  RLIAGVDEAGRGPLAGPVAVAAVVFDPSRPRINGLDDSKQLTAARREQLHDRIIERALAW 83

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
            +       ID+ NI++ATL  +   V  +  +   A IDG  +P+ L   A A+I GD 
Sbjct: 84  HVVLVDVDTIDRLNIYQATLQGMREVVAAVAHVAGFARIDGNVVPKGLVLPAQALIGGDG 143

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           I  +I AASI+AKV+RDR M+  H ++P YGF+ H GY T  H   ++E GP   HR +F
Sbjct: 144 IDRAIMAASILAKVSRDRYMQDVHARHPQYGFEQHKGYGTPAHLAALREHGPCLEHRRSF 203

Query: 202 RPLRN 206
            P+R 
Sbjct: 204 APVRE 208


>gi|159028469|emb|CAO87276.1| rnhB [Microcystis aeruginosa PCC 7806]
          Length = 207

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 79/197 (40%), Positives = 109/197 (55%), Gaps = 20/197 (10%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD------------PNNIPFGINDSKKISHKKREELY 72
            +AG+DEVGRGAL GP                     P     G+ DSK++S +KR++L 
Sbjct: 6   LIAGVDEVGRGALFGP--------VVAAVVVTVPSGFPQLWELGVKDSKQLSPQKRQKLS 57

Query: 73  EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           ++I    +  I  A+ + ID+ NI  A+L A+  A+  L + P   LIDG+ I +DL   
Sbjct: 58  QQIQRDFVCRIGYATVKEIDRLNILHASLLAMSRAIGKLPLSPSLCLIDGKHIIKDLSIP 117

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             AVI+GD  S  IAAASI+AKV RD L+   H +YPDYG   H GY TA+H + I   G
Sbjct: 118 QKAVIQGDQQSPVIAAASIVAKVWRDDLIARWHGRYPDYGLPRHKGYGTAQHLEAIGNHG 177

Query: 193 PSCIHRLTFRPLRNLSV 209
            +  HRL+F P + + V
Sbjct: 178 LTSQHRLSFSPCQQIRV 194


>gi|39932425|sp|Q8NNZ4|RNH2_CORGL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|21324803|dbj|BAB99426.1| Ribonuclease HII [Corynebacterium glutamicum ATCC 13032]
          Length = 209

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 68/188 (36%), Positives = 93/188 (49%), Gaps = 4/188 (2%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITS 77
              + PVAG+DE GRGA  GP+ +AA IL    I     + DSKK+S   RE+L   I  
Sbjct: 3   RNGLGPVAGVDEAGRGACCGPISIAACILPDKPIQELAALTDSKKLSASTREKLMPLIKK 62

Query: 78  SAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136
            A+  S+   S Q ID+  I  A +  +  AV  L   P   L D   +P         +
Sbjct: 63  HALAWSVIVISAQDIDRFGIQHANISGMRRAVAALGTQPGYVLTDAMKVP-GFTVPYLPI 121

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           I GD+ +  IAAAS++AK TRD +M      YP YG + H GY T  H   ++  G S  
Sbjct: 122 IGGDASARCIAAASVLAKQTRDDIMTDMANDYPHYGLEIHKGYSTKIHMDAVRHHGASPE 181

Query: 197 HRLTFRPL 204
           HR ++  +
Sbjct: 182 HRYSYANV 189


>gi|91975688|ref|YP_568347.1| ribonuclease HII [Rhodopseudomonas palustris BisB5]
 gi|122969169|sp|Q13BU3|RNH2_RHOPS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|91682144|gb|ABE38446.1| RNase HII [Rhodopseudomonas palustris BisB5]
          Length = 298

 Score =  207 bits (529), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 87/196 (44%), Positives = 130/196 (66%), Gaps = 1/196 (0%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +P F  E  + ++ +WPVAG DE GRG LAGPVV AA++LDP  +P G++DSK+++  +R
Sbjct: 70  QPSFRRERALIKRGVWPVAGCDEAGRGPLAGPVVAAAVVLDPKRVPKGLDDSKRLTADRR 129

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           EEL+E+I ++A ++++ AS + I++ NI +A+L A+  AV  L  +P+   +DGR     
Sbjct: 130 EELFEEICATAQVAVAYASPERINRDNILRASLWALTRAVHALPDLPQHVFVDGRD-RLA 188

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
             C++ AV+ GD +  SIAAASIIAKV+RDRLM    ++ P YGF+SH GY   +H   +
Sbjct: 189 TRCESEAVVGGDGLIASIAAASIIAKVSRDRLMCRLAQECPGYGFESHKGYGVPEHLAAL 248

Query: 189 KEKGPSCIHRLTFRPL 204
              GP+  HR  F P+
Sbjct: 249 ARLGPTVHHRRFFAPV 264


>gi|224533903|ref|ZP_03674488.1| ribonuclease HII [Borrelia burgdorferi CA-11.2a]
 gi|225549198|ref|ZP_03770171.1| ribonuclease HII [Borrelia burgdorferi 94a]
 gi|224512906|gb|EEF83272.1| ribonuclease HII [Borrelia burgdorferi CA-11.2a]
 gi|225370056|gb|EEG99496.1| ribonuclease HII [Borrelia burgdorferi 94a]
          Length = 181

 Score =  207 bits (528), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 73/180 (40%), Positives = 106/180 (58%), Gaps = 1/180 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAIISIS 84
           + GIDEVGRG + GP++ AA++          ++DSKK+  +KRE L   I  ++  + +
Sbjct: 2   ICGIDEVGRGCIFGPILSAAVVFKKKLGFIKELDDSKKLKKEKREYLSSLILENSYYAFA 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S+  I+K NIH A+L A+  A ENL++     L+DG+ +P+       A+IKGDSI  
Sbjct: 62  EISNITIEKINIHNASLLAMQTAYENLKLNCSLVLVDGKFVPKITAKNVKAIIKGDSIID 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I AASIIAKV RD+LM    K YP Y    + GYPT +H+  IK+ G   +HR  F+ +
Sbjct: 122 EIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFKLI 181


>gi|218249357|ref|YP_002374579.1| ribonuclease HII [Borrelia burgdorferi ZS7]
 gi|221217459|ref|ZP_03588930.1| ribonuclease HII [Borrelia burgdorferi 72a]
 gi|224533017|ref|ZP_03673623.1| ribonuclease HII [Borrelia burgdorferi WI91-23]
 gi|225549702|ref|ZP_03770667.1| ribonuclease HII [Borrelia burgdorferi 118a]
 gi|226320780|ref|ZP_03796336.1| ribonuclease HII [Borrelia burgdorferi 29805]
 gi|226322040|ref|ZP_03797565.1| ribonuclease HII [Borrelia burgdorferi Bol26]
 gi|226736816|sp|B7J0Y4|RNH2_BORBZ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|218164545|gb|ACK74606.1| ribonuclease HII [Borrelia burgdorferi ZS7]
 gi|221192737|gb|EEE18953.1| ribonuclease HII [Borrelia burgdorferi 72a]
 gi|224512011|gb|EEF82406.1| ribonuclease HII [Borrelia burgdorferi WI91-23]
 gi|225369662|gb|EEG99110.1| ribonuclease HII [Borrelia burgdorferi 118a]
 gi|226232630|gb|EEH31384.1| ribonuclease HII [Borrelia burgdorferi Bol26]
 gi|226233835|gb|EEH32560.1| ribonuclease HII [Borrelia burgdorferi 29805]
 gi|312149652|gb|ADQ29723.1| ribonuclease HII [Borrelia burgdorferi N40]
          Length = 181

 Score =  207 bits (528), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 73/180 (40%), Positives = 107/180 (59%), Gaps = 1/180 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           + GIDEVGRG + GP++ AA++     +    ++DSKK+  +KRE L   I  ++  + +
Sbjct: 2   ICGIDEVGRGCIFGPILSAAVVFKKKPSFIKELDDSKKLKKEKREYLSSLILKNSYYAFA 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S+  I+K NIH A+L A+  A ENL++     L+DG+ +P+       A+IKGDSI  
Sbjct: 62  EISNITIEKINIHNASLLAMQTAYENLKLNCSLVLVDGKFVPKITAKNVKAIIKGDSIID 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I AASIIAKV RD+LM    K YP Y    + GYPT +H+  IK+ G   +HR  F+ +
Sbjct: 122 EIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFKLI 181


>gi|320536890|ref|ZP_08036883.1| ribonuclease HII [Treponema phagedenis F0421]
 gi|320146273|gb|EFW37896.1| ribonuclease HII [Treponema phagedenis F0421]
          Length = 199

 Score =  207 bits (528), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 82/193 (42%), Positives = 104/193 (53%), Gaps = 13/193 (6%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81
           M  + GIDE GRG LAGPV  AA+IL P+     +NDSKK+S +KRE     I + A+ I
Sbjct: 1   MTLICGIDEAGRGPLAGPVTAAAVILPPDFASTLLNDSKKLSPQKREACRALIQAQALFI 60

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENL---------QVIPRSALIDGRSIPEDLP-- 130
               A H  ID  NI +ATL A+  A ++L         +      ++DG  +P+ L   
Sbjct: 61  GEGRADHIEIDAINILQATLLAMKRAFDDLYQKVLTSECRAASIRIIVDGNKLPDFLNPS 120

Query: 131 -CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              A A  K D+    + AASIIAK TRD  M    KKYP YG++ H GY TA H Q IK
Sbjct: 121 IIAAAAEPKADAKYPEVMAASIIAKTTRDMEMLEWAKKYPQYGYEKHKGYCTAAHVQAIK 180

Query: 190 EKGPSCIHRLTFR 202
             G S I R TF+
Sbjct: 181 NFGFSPIQRKTFK 193


>gi|326382879|ref|ZP_08204569.1| ribonuclease HII [Gordonia neofelifaecis NRRL B-59395]
 gi|326198469|gb|EGD55653.1| ribonuclease HII [Gordonia neofelifaecis NRRL B-59395]
          Length = 219

 Score =  207 bits (528), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 77/196 (39%), Positives = 113/196 (57%), Gaps = 4/196 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREEL 71
           LE  +  + + PVAG+DE GRGA AGP+VVAA +L    +     ++DSKK+S   RE L
Sbjct: 22  LEFTLARQGLGPVAGVDEAGRGACAGPLVVAACVLGAAQLKSLASLDDSKKLSEATRERL 81

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y  +   A+  ++ +     +D+  +H A ++ +  AV  L V P   L DG  +P  LP
Sbjct: 82  YTAVVRHAVSWNVVAIPAAEVDRLGVHVANIEGMRRAVAGLSVRPGYVLSDGFQVP-GLP 140

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD+ +  IAAAS++AKVTRDR+M     + P Y F  H GY TA H   +  
Sbjct: 141 APSLPVIGGDANAACIAAASVLAKVTRDRMMVALDAELPGYEFAVHKGYSTALHMACLDA 200

Query: 191 KGPSCIHRLTFRPLRN 206
           +GPS  HR+++R +R+
Sbjct: 201 RGPSVEHRMSYRNVRD 216


>gi|224532055|ref|ZP_03672687.1| ribonuclease HII [Borrelia valaisiana VS116]
 gi|224511520|gb|EEF81926.1| ribonuclease HII [Borrelia valaisiana VS116]
          Length = 181

 Score =  207 bits (528), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 73/180 (40%), Positives = 107/180 (59%), Gaps = 1/180 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           + GIDEVGRG + GP++ AA++     +    ++DSKK+  +KRE LY  I  ++  + +
Sbjct: 2   ICGIDEVGRGCIFGPILSAAVVFKKKPSFVKELDDSKKLKKEKREYLYSLILENSYYAFA 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S+  I+K NIH A+L A+  A ENL++      +DG+ +P+       A+IKGDSI  
Sbjct: 62  EISNITIEKINIHNASLLAMQTAYENLKLNCSLVFVDGKFVPKITAKTVKAIIKGDSIID 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I AASIIAKV RD+LM    K YP Y    + GYPT +H+  IK+ G   +HR  F+ +
Sbjct: 122 EIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFKLI 181


>gi|219684853|ref|ZP_03539795.1| ribonuclease HII [Borrelia garinii PBr]
 gi|219685363|ref|ZP_03540182.1| ribonuclease HII [Borrelia garinii Far04]
 gi|219671798|gb|EED28853.1| ribonuclease HII [Borrelia garinii PBr]
 gi|219673136|gb|EED30156.1| ribonuclease HII [Borrelia garinii Far04]
          Length = 181

 Score =  207 bits (528), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 74/180 (41%), Positives = 106/180 (58%), Gaps = 1/180 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           + GIDEVGRG + GPV+ AA++     N    ++DSKK+  +KRE L   I  ++  + +
Sbjct: 2   ICGIDEVGRGCIFGPVLSAAVVFKKKPNFIKELDDSKKLKKEKREYLSSLILENSYYAFA 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S+  I+K NIH ATL A+  A ENL++      +DG+ +P+       A+IKGDSI  
Sbjct: 62  EISNIIIEKINIHNATLLAMQTAYENLKLNCSLVFVDGKFVPKITAKTVKAIIKGDSIID 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I AASIIAKV RD+L+    K YP Y    + GYPT +H+  IK+ G   +HR  F+ +
Sbjct: 122 EIKAASIIAKVKRDKLIDEYDKIYPLYLLRKNKGYPTKEHKNAIKKYGVLSLHRKNFKLI 181


>gi|15594392|ref|NP_212180.1| ribonuclease HII [Borrelia burgdorferi B31]
 gi|195941785|ref|ZP_03087167.1| ribonuclease H (rnhB) [Borrelia burgdorferi 80a]
 gi|216264713|ref|ZP_03436705.1| ribonuclease HII [Borrelia burgdorferi 156a]
 gi|7227916|sp|O51075|RNH2_BORBU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|2687927|gb|AAC66435.1| ribonuclease H (rnhB) [Borrelia burgdorferi B31]
 gi|215981186|gb|EEC21993.1| ribonuclease HII [Borrelia burgdorferi 156a]
 gi|312148276|gb|ADQ30935.1| ribonuclease HII [Borrelia burgdorferi JD1]
          Length = 181

 Score =  207 bits (528), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 73/180 (40%), Positives = 107/180 (59%), Gaps = 1/180 (0%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           + GIDEVGRG + GP++ AA++     +    ++DSKK+  +KRE L   I  ++  + +
Sbjct: 2   ICGIDEVGRGCIFGPILSAAVVFKKKPSFIKELDDSKKLKKEKREYLSSLILENSYYAFA 61

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
             S+  I+K NIH A+L A+  A ENL++     L+DG+ +P+       A+IKGDSI  
Sbjct: 62  EISNITIEKINIHNASLLAMQTAYENLKLNCSLVLVDGKFVPKITAKNVKAIIKGDSIID 121

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            I AASIIAKV RD+LM    K YP Y    + GYPT +H+  IK+ G   +HR  F+ +
Sbjct: 122 EIKAASIIAKVKRDKLMDKYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFKLI 181


>gi|317968686|ref|ZP_07970076.1| ribonuclease HII [Synechococcus sp. CB0205]
          Length = 191

 Score =  207 bits (527), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 68/184 (36%), Positives = 97/184 (52%), Gaps = 6/184 (3%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
             +AG+DEVGRG   GPV   A++L           G+ DSK +S K+R +L   I   A
Sbjct: 1   MRIAGVDEVGRGCWFGPVFAGAVVLSDAARETLSAAGLTDSKALSAKRRSQLVPLILEQA 60

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ-VIPRSALIDGRSIPEDLPCQAFAVI 137
              ++  AS Q +D   I  AT  A+  A++ L    P   L+DG             V+
Sbjct: 61  ESWALGQASAQEVDGLGIRSATERAMLRALQRLGSPAPDHVLVDGNLPLRLWSGSQETVV 120

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           +GDS  L IAAAS++AK  RD L+    ++YP YGF+ H GY TA+H+  +   GP+ +H
Sbjct: 121 RGDSAHLEIAAASVLAKQARDALLVRLGQRYPGYGFERHAGYGTAQHRAAVLSLGPTQLH 180

Query: 198 RLTF 201
           R +F
Sbjct: 181 RRSF 184


>gi|940885|gb|AAC44577.1| RnhB [Vibrio cholerae C6706]
          Length = 162

 Score =  207 bits (527), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 72/158 (45%), Positives = 98/158 (62%), Gaps = 2/158 (1%)

Query: 50  PNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAV 108
           PN    G+NDSKK+S KKR  L+ +I   A+  ++   S Q ID+ NI +AT+ A+  AV
Sbjct: 1   PNRPIMGLNDSKKLSEKKRLALFPEIQVKALAWAVGRCSPQEIDELNIFQATMVAMQRAV 60

Query: 109 ENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
             L++ P   LIDG  IP+ LP +A AV+KGD     I+AASIIAKV RD+ M    K+Y
Sbjct: 61  AGLRIQPDLVLIDGNKIPK-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQY 119

Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           P +GF +H GYPTA H   I++ G    HR +F P++ 
Sbjct: 120 PQFGFANHKGYPTAAHFAAIEQHGVIEQHRKSFGPVKR 157


>gi|149185908|ref|ZP_01864223.1| Ribonuclease H [Erythrobacter sp. SD-21]
 gi|148830469|gb|EDL48905.1| Ribonuclease H [Erythrobacter sp. SD-21]
          Length = 211

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 71/188 (37%), Positives = 106/188 (56%), Gaps = 9/188 (4%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
            + G+DE GRG LAGPVV AA++L     P G++DSKK+S  KR +L  +I       ++
Sbjct: 15  LIVGVDEAGRGPLAGPVVAAAVVLCKPC-PGGLDDSKKLSAAKRSKLEPQIQRRCAWGLA 73

Query: 85  SASHQYIDKHNIHKATLDAI----YHAVENLQVIPRSALIDGRSIP----EDLPCQAFAV 136
               + ID+ NI  AT+ A+       +E L   P   LIDG   P    E+    A A+
Sbjct: 74  VVEPEVIDRLNIFGATMLAMTLATQRCIEALGAEPAEVLIDGNMTPHGRREEWRWPARAI 133

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           + GD     I+AASI+AK  RDR+M  A K +P YG++++ GY +  H + ++  GP+ +
Sbjct: 134 VGGDGKEACISAASILAKEYRDRIMVEAAKAHPHYGWENNKGYGSKSHMEALRLHGPTPL 193

Query: 197 HRLTFRPL 204
           HR +F P+
Sbjct: 194 HRRSFAPV 201


>gi|78356141|ref|YP_387590.1| ribonuclease HII [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|97182419|sp|Q313K1|RNH2_DESDG RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|78218546|gb|ABB37895.1| RNase HII [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 263

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 80/207 (38%), Positives = 109/207 (52%), Gaps = 29/207 (14%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPF---------GINDSKKISHKKREELYEKITSS 78
           GIDE GRG LAGPVV AA+IL P   P          G+ DSKK+S K+R  L   I S 
Sbjct: 43  GIDEAGRGCLAGPVVAAAVILPPAGAPAAPHIAAALSGLTDSKKLSEKRRLTLEPAIKSC 102

Query: 79  AI-ISISSASHQYIDKHNIHKATLDAIYHAVENL-----------QVIPRSALIDG-RSI 125
           A+   +     Q ID+ NI +AT  A+  AV +L            + P    +DG ++I
Sbjct: 103 AVRWGVGVVWPQVIDRINILQATYRAMSLAVRHLRGGGAAASMPAGLPPVFLAVDGDKTI 162

Query: 126 P-------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
           P         L     A++ GD   ++I+AAS++AK  RDRLM    K+Y  YGF +H G
Sbjct: 163 PGQVLQAVTGLSVPQEAIVGGDGCVMAISAASVLAKTFRDRLMTALDKRYSGYGFATHKG 222

Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           Y TA H + I+  GP  +HRL+F  ++
Sbjct: 223 YGTAAHIEAIRRLGPCRMHRLSFAKVK 249


>gi|145295936|ref|YP_001138757.1| ribonuclease HII [Corynebacterium glutamicum R]
 gi|189043588|sp|A4QF39|RNH2_CORGB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|140845856|dbj|BAF54855.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 209

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 67/188 (35%), Positives = 92/188 (48%), Gaps = 4/188 (2%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITS 77
              + PVAG+DE GRGA  GP+ +AA IL    I     + DSK +S   RE+L   I  
Sbjct: 3   RNGLGPVAGVDEAGRGACCGPISIAACILPDKPIQELAALTDSKNLSASTREKLMPLIKK 62

Query: 78  SAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136
            A+  S+   S Q ID+  I  A +  +  AV  L   P   L D   +P         +
Sbjct: 63  HALAWSVIVISAQDIDRFGIQHANISGMRRAVAALDTQPGYVLTDAMKVP-GFTVPYLPI 121

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           I GD+ +  IAAAS++AK TRD +M      YP YG + H GY T  H   ++  G S  
Sbjct: 122 IGGDASARCIAAASVLAKQTRDDIMTDMANDYPHYGLEIHKGYSTKIHMDAVRHHGASPE 181

Query: 197 HRLTFRPL 204
           HR ++  +
Sbjct: 182 HRYSYANV 189


>gi|111225146|ref|YP_715940.1| ribonuclease HII [Frankia alni ACN14a]
 gi|123043979|sp|Q0RDP7|RNH2_FRAAA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|111152678|emb|CAJ64419.1| Endoribonuclease H. RNase H (RnhB) [Frankia alni ACN14a]
          Length = 241

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/197 (37%), Positives = 111/197 (56%), Gaps = 5/197 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN---NIPFGINDSKKISHKKR 68
           F  E  +    + PVAG+DE GRGA AGP+VVAA++L P+    +   + DSK ++ + R
Sbjct: 15  FGYERALVRCGLGPVAGVDEAGRGACAGPLVVAAVVLGPDGRRRLSPRLADSKLLTEQVR 74

Query: 69  EELYEK-ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E L+++ + ++A  S        ID+  +H A +  +  AV  L   P   L DG ++  
Sbjct: 75  EGLFDEVLRAAADWSAVVIPAAEIDRTGVHVANITGMRRAVARLGHRPGYVLTDGFAV-A 133

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
               ++ AV+KGD ++  IAAASI+AKVTRDR+MR  H +Y +Y F  H GY TA H   
Sbjct: 134 GFGTESLAVVKGDRVAACIAAASIVAKVTRDRIMRALHTRYAEYDFAQHKGYVTAAHAAA 193

Query: 188 IKEKGPSCIHRLTFRPL 204
           +   GP   HR ++  +
Sbjct: 194 LARYGPCDEHRKSYVNV 210


>gi|313773607|gb|EFS39573.1| ribonuclease HII [Propionibacterium acnes HL074PA1]
          Length = 204

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/195 (37%), Positives = 103/195 (52%), Gaps = 4/195 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELY 72
           E  +    + PVAG DE GRGA AGP+V AA+ILD        G+ DSK +S  KRE L+
Sbjct: 4   ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 63

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   A+ +S         D+  + +A +  +  AV  L V P   L DG  + + L  
Sbjct: 64  NVIMDKALAVSWVGVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 122

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               + KGDS+   +AA+ + A+V RDR+M     + P Y F  H GY TA HQ+ +KE 
Sbjct: 123 PDLGMWKGDSVCACVAASPLAAQVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 182

Query: 192 GPSCIHRLTFRPLRN 206
           GPS  HR+++  +R 
Sbjct: 183 GPSRQHRMSYANVRR 197


>gi|324998958|ref|ZP_08120070.1| ribonuclease HII [Pseudonocardia sp. P1]
          Length = 234

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 5/189 (2%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITS 77
              + PVAG+DE GRGA AGP+VVAA +L P +     G+ DSK ++   RE  Y +I  
Sbjct: 1   RHGLGPVAGVDEAGRGASAGPLVVAACVLRPADAAALDGLTDSKLLTASAREHWYGRIRK 60

Query: 78  SAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ-VIPRSALIDGRSIPEDLPCQAFA 135
            A+ +++       +D+  +H A ++ +  AV  L  V P   L DG ++       A A
Sbjct: 61  RALDLAVVVIPPAEVDRRGVHIANIEGMRRAVAALTTVPPGYVLTDGFAV-RGFGRPALA 119

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           V KGD ++  IAAAS++AKVTRDR+M     ++  YGF  H GY T +H+  ++  GP  
Sbjct: 120 VPKGDRVAACIAAASVLAKVTRDRIMTELDAEHAAYGFAVHKGYNTPEHEGALRAHGPCP 179

Query: 196 IHRLTFRPL 204
            HR +F  +
Sbjct: 180 EHRFSFANV 188


>gi|307325020|ref|ZP_07604224.1| Ribonuclease H [Streptomyces violaceusniger Tu 4113]
 gi|306889166|gb|EFN20148.1| Ribonuclease H [Streptomyces violaceusniger Tu 4113]
          Length = 233

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 72/197 (36%), Positives = 107/197 (54%), Gaps = 2/197 (1%)

Query: 8   ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           E P   +E  +R       V GIDEVGRGA AGPV V A +      P G+ DSK +S K
Sbjct: 4   EPPTHSVERSLRATTGAKIVVGIDEVGRGAWAGPVTVCAAVTGLRRPPTGLTDSKLLSPK 63

Query: 67  KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           KR  L +++ S     ++  +S + ID   +  A   A   A++ L V P + ++DG+  
Sbjct: 64  KRTTLAQELHSWVTAHALGHSSPEEIDGLGMTAALRLAATRALDALPVRPDAVILDGKHD 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
               P     VIKGD   +S+AAAS+IAKV RD +M     ++ D+ F+ + GYP+  H+
Sbjct: 124 YLGTPWAVRTVIKGDQSCVSVAAASVIAKVRRDAMMAELGAEHMDFCFEDNAGYPSPVHR 183

Query: 186 QVIKEKGPSCIHRLTFR 202
             ++E GP+  HRL++ 
Sbjct: 184 AALRELGPTPHHRLSWA 200


>gi|170079067|ref|YP_001735705.1| ribonuclease HII [Synechococcus sp. PCC 7002]
 gi|169886736|gb|ACB00450.1| ribonuclease HII [Synechococcus sp. PCC 7002]
          Length = 200

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 75/191 (39%), Positives = 105/191 (54%), Gaps = 17/191 (8%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAI----------ILDPNNIPFGINDSKKISHKKREELY 72
           M  +AG+DEVGRG L GP                I +      G+ DSKK+S K+RE L 
Sbjct: 1   MVLLAGVDEVGRGCLFGP------VVAAVVVVNTIQEQALGELGVTDSKKLSAKRRETLV 54

Query: 73  EKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
            +I +     +I+SAS   ID+ NI +AT  A+  AVE LQ+ P    +DGR     L  
Sbjct: 55  PQIQALVTDWAIASASVAEIDQLNILQATFLAMTRAVEKLQIKPTEIFVDGRQTIPKLNY 114

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
              A+I+GDS   +IAAASI+AKV RD+ +    + YP+Y   ++ GY T KH+Q I + 
Sbjct: 115 PQQAIIQGDSKVKAIAAASILAKVQRDQDIIQLAEHYPEYDLANNKGYGTQKHRQAIWQY 174

Query: 192 GPSCIHRLTFR 202
           G +  HR +F+
Sbjct: 175 GLTPHHRQSFK 185


>gi|152989967|ref|YP_001355689.1| ribonuclease HII [Nitratiruptor sp. SB155-2]
 gi|151421828|dbj|BAF69332.1| ribonuclease HII [Nitratiruptor sp. SB155-2]
          Length = 182

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 69/179 (38%), Positives = 98/179 (54%), Gaps = 8/179 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           + GIDE GRG LAGP+V+A ++       + ++DSKK+S + RE+LYEKI ++   +I  
Sbjct: 3   ICGIDEAGRGPLAGPLVMAGVVFTQR--VYKLDDSKKLSPQAREKLYEKIINATQYTIVI 60

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ-AFAVIKGDSISL 144
             +  ID+  I       +   +  L       + DG S       +    VIK D    
Sbjct: 61  IDNDTIDQIGISACISQGLKEIISALHAK--RYIFDGNS---KFGVENIEPVIKADQTIK 115

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            + AASI+AKVTRDR+M    K+YP+YGF  H GY T +H + I+  G S IHR +FRP
Sbjct: 116 EVMAASILAKVTRDRIMCEMDKEYPEYGFCKHKGYGTKEHIEAIQRYGFSPIHRKSFRP 174


>gi|51892612|ref|YP_075303.1| ribonuclease HII [Symbiobacterium thermophilum IAM 14863]
 gi|81388972|sp|Q67PD4|RNH21_SYMTH RecName: Full=Ribonuclease HII 1; Short=RNase HII 1
 gi|51856301|dbj|BAD40459.1| ribonuclease HII [Symbiobacterium thermophilum IAM 14863]
          Length = 259

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 75/189 (39%), Positives = 107/189 (56%), Gaps = 2/189 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           +  E  +       +AGIDEVGRG LAGPVV AA+IL       GI ++K++S ++R EL
Sbjct: 56  YNYERQLWSMGYRHIAGIDEVGRGPLAGPVVAAAVILPGEVELPGIEEAKRLSDRRRMEL 115

Query: 72  YEKITSSAIISISSAS-HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y +I   A+         + ID+ ++  AT  A+  AV +L V P   LIDG  +P ++ 
Sbjct: 116 YRRIREVAVAVGVGLVQPEGIDEASVVVATYKAMMKAVADLPVTPDYLLIDGVHLP-NVS 174

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                V+ G+++S SIAAA+++AKV RD  M     KYP YGF  H GY T +H+  ++ 
Sbjct: 175 QPQVPVVGGETLSCSIAAAAVVAKVVRDEYMVEMDAKYPAYGFAHHKGYGTPEHRLALER 234

Query: 191 KGPSCIHRL 199
            GP  IHR 
Sbjct: 235 YGPCPIHRK 243


>gi|308810146|ref|XP_003082382.1| putative ribonuclease HII (ISS) [Ostreococcus tauri]
 gi|116060850|emb|CAL57328.1| putative ribonuclease HII (ISS) [Ostreococcus tauri]
          Length = 299

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 74/200 (37%), Positives = 116/200 (58%), Gaps = 9/200 (4%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P    E    +     V G+DE GRG LAGPVV AA  +  + +   +NDSK+++ + RE
Sbjct: 98  PDRSHEKKHWDAGRHRVVGVDEAGRGPLAGPVVAAACFVPKDCVVDCVNDSKQLTEEGRE 157

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           E++E++ ++  I             NI + T++A+  +  ++  +    LIDG  +P+ L
Sbjct: 158 EIFEELMANKEI--------EYRGINILECTMEAMTRSALDVPNV-DWVLIDGNRVPKPL 208

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
             +A A++KGD+ +++IAAASIIAKVTRDR+M    K++P YGF  H GY T  H   I 
Sbjct: 209 EGKAEAIVKGDAKNVAIAAASIIAKVTRDRMMVEIDKEFPMYGFKDHKGYGTKAHMAAID 268

Query: 190 EKGPSCIHRLTFRPLRNLSV 209
           + GP   HR TF P++++ +
Sbjct: 269 KYGPCVYHRKTFAPIKHMDL 288


>gi|192289636|ref|YP_001990241.1| ribonuclease HII [Rhodopseudomonas palustris TIE-1]
 gi|238692592|sp|B3QHK8|RNH2_RHOPT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|192283385|gb|ACE99765.1| Ribonuclease H [Rhodopseudomonas palustris TIE-1]
          Length = 281

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 89/195 (45%), Positives = 125/195 (64%), Gaps = 1/195 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E  + ++ +WP+AG DE GRG LAGPVV AA++LDP  +P G++DSK++S +KRE
Sbjct: 59  PSFRRERALIKRGIWPIAGCDEAGRGPLAGPVVAAAVVLDPKRVPKGLDDSKRLSAEKRE 118

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L+E+I ++A +S+  AS + I++ NI +A+L A+  AV  L  +PR   +DGR      
Sbjct: 119 ALFEEICATAQVSVVYASPERINRDNILRASLWALTRAVHALPDLPRHVFVDGRD-RLAT 177

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C   AVI GD +  SIAAASIIAKV+RDRLM    ++ P YGF+ H GY   +H   + 
Sbjct: 178 KCDCEAVIGGDGLIASIAAASIIAKVSRDRLMCKLAEQCPGYGFEQHKGYGVPEHLDALA 237

Query: 190 EKGPSCIHRLTFRPL 204
             GP+  HR  F P+
Sbjct: 238 RLGPTVHHRRFFAPV 252


>gi|291004125|ref|ZP_06562098.1| ribonuclease HII [Saccharopolyspora erythraea NRRL 2338]
          Length = 238

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 80/197 (40%), Positives = 116/197 (58%), Gaps = 4/197 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKR 68
           ++ L++ +  + + PVAG+DE GRGA AGP+VVAA  L P       G+ DSK +S  +R
Sbjct: 8   NWALQSALDRRGLGPVAGVDEAGRGACAGPLVVAACALKPGDGRRFEGLTDSKVLSPAER 67

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E LY+ I + A+ +S+       +D   IH A L+ +  AV  L V P   L DG  +P 
Sbjct: 68  ERLYDVIQAKALSLSVIVIPADEVDALGIHVANLEGMRRAVAQLSVAPGYVLTDGFRVP- 126

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            L   + AV+KGD ++  +AAAS++AKVTRDR+M   H+++P YGFD H GY T+ H   
Sbjct: 127 GLGAPSVAVVKGDLVAACVAAASVLAKVTRDRIMTGLHEQFPVYGFDEHKGYCTSDHTAR 186

Query: 188 IKEKGPSCIHRLTFRPL 204
           + E GP   HR  +  +
Sbjct: 187 LTEHGPCEEHRWCYANV 203


>gi|302874784|ref|YP_003843417.1| Ribonuclease H [Clostridium cellulovorans 743B]
 gi|307690600|ref|ZP_07633046.1| ribonuclease HII [Clostridium cellulovorans 743B]
 gi|302577641|gb|ADL51653.1| Ribonuclease H [Clostridium cellulovorans 743B]
          Length = 261

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 85/196 (43%), Positives = 125/196 (63%), Gaps = 10/196 (5%)

Query: 19  REKNMWPV-AGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKKREELY 72
           R++ ++ + AG+DEVGRG LAGP+V AA++LD       N+  GI DSKK+S KKREEL 
Sbjct: 67  RDQGVYAITAGVDEVGRGPLAGPIVAAAVVLDLYDLKDENLILGIKDSKKLSAKKREELD 126

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           + I   A+  +I  A +  ID+  I     +    A++ L+V P   + DG  +   + C
Sbjct: 127 KLIKERAVSYAIGIADNNEIDEKGIAWCNNEVFKRAIKGLKVRPDLVISDGFPV-SGIEC 185

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +     KGD++S+SIAAASIIAKV RD +M+  HKKYP+Y F+++VGY T +H + IK  
Sbjct: 186 ENKYYYKGDNLSISIAAASIIAKVFRDEIMQDYHKKYPNYNFEANVGYGTEEHVRAIKMF 245

Query: 192 GPSCIHRLTFRPLRNL 207
           G + IHR++F  L+N+
Sbjct: 246 GITPIHRMSF--LKNI 259


>gi|194365030|ref|YP_002027640.1| Ribonuclease H [Stenotrophomonas maltophilia R551-3]
 gi|194347834|gb|ACF50957.1| Ribonuclease H [Stenotrophomonas maltophilia R551-3]
          Length = 224

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 111/185 (60%), Gaps = 2/185 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-I 81
             VAG+DE GRG LAGPV VAA++ DP      G++DSK+++  +RE+L+++I   A+  
Sbjct: 24  RLVAGVDEAGRGPLAGPVAVAAVVFDPARPRINGLDDSKQLTAARREQLHDRIIERALAW 83

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
            +       ID+ NI++ATL  +   V  +  +   A IDG  +P+ L   A A++ GD 
Sbjct: 84  HVVLVDVDTIDRLNIYQATLQGMRDVVAAVAHVAGFARIDGNVVPKGLVLPAQALVGGDG 143

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           I  +I AASI+AKV+RDR M   H ++P YGF+ H GY T  H   ++E GP   HR +F
Sbjct: 144 IDRAIMAASILAKVSRDRYMLDVHSRHPQYGFEQHKGYGTPAHLAALREHGPCVEHRRSF 203

Query: 202 RPLRN 206
            P+R 
Sbjct: 204 APVRE 208


>gi|332298244|ref|YP_004440166.1| Ribonuclease H [Treponema brennaborense DSM 12168]
 gi|332181347|gb|AEE17035.1| Ribonuclease H [Treponema brennaborense DSM 12168]
          Length = 197

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 72/192 (37%), Positives = 102/192 (53%), Gaps = 16/192 (8%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
            + G+DE GRG LAGPV   A+IL P+     +NDSKK+S K+R  L   I   A   ++
Sbjct: 5   LICGLDEAGRGPLAGPVSAGAVILPPDFPVELLNDSKKLSEKRRAVLESLIKERACWGVA 64

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRS---------------ALIDGRSIPEDL 129
              H  ID+ NI +A+L A+  A + ++    +               A+ DG   P D+
Sbjct: 65  LVDHTVIDEINILQASLLAMKLAFDQMRQKLPAFCASRFGSCAQPLVSAIADGTFCP-DI 123

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                A  K D+   ++ AASI+AK  RDR+M    + YP YG++ H GYPT  H+++ K
Sbjct: 124 RVPCVARPKADATESAVMAASILAKTERDRVMIAYGQLYPQYGYEKHKGYPTKAHRELCK 183

Query: 190 EKGPSCIHRLTF 201
             GPS I RLTF
Sbjct: 184 LLGPSPIQRLTF 195


>gi|257459902|ref|ZP_05625008.1| ribonuclease HII [Campylobacter gracilis RM3268]
 gi|257442754|gb|EEV17891.1| ribonuclease HII [Campylobacter gracilis RM3268]
          Length = 187

 Score =  204 bits (521), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 95/185 (51%), Gaps = 5/185 (2%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
             + GIDE GRG LAGP+ VA  +L       G+ DSKK+S K+REELY +I  ++   I
Sbjct: 3   GQICGIDEAGRGCLAGPLCVAGCVL--QREIAGLADSKKLSEKRREELYARIIENSRYKI 60

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
              S   +D+  +      A+   +          + DG +       Q   ++K D+  
Sbjct: 61  VEISSAQVDEAGLSSCLRSALEQILAYFMGFSGQIIYDGNATFGVRGLQ--TLVKADAQI 118

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             ++AASI+AKVTRDR M    ++YP YGF  + GY +  H   I+  G +  HR +++ 
Sbjct: 119 AEVSAASILAKVTRDRTMNELARRYPQYGFAQNKGYGSRAHIAAIERYGLTPFHRASYK- 177

Query: 204 LRNLS 208
           +++L 
Sbjct: 178 IKSLQ 182


>gi|33241107|ref|NP_876049.1| ribonuclease HII [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|39932302|sp|Q7VA11|RNH2_PROMA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|33238637|gb|AAQ00702.1| Ribonuclease HII [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 191

 Score =  204 bits (521), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 77/180 (42%), Positives = 102/180 (56%), Gaps = 5/180 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILD---PNNIP-FGINDSKKISHKKREELYEKITSSA-II 81
           AG+DEVGRGAL GPV   A+ILD    + +   G+ DSKK+S  KR  L   I   +   
Sbjct: 7   AGLDEVGRGALFGPVFAGAVILDNQAEDQLIDAGLKDSKKLSALKRSNLVPLIKKISHCW 66

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           +I  +S + ID   I  AT  A+  AV  L+  P   LIDG         +   VIKG+ 
Sbjct: 67  AIGQSSAREIDLLGIRNATEKAMIRAVHRLEKQPDVLLIDGCLNLRLWHGEQKTVIKGED 126

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +  SIAAAS++AKV RD L++   +KYP YG + HVGY TA H+  I + G + +HR TF
Sbjct: 127 LYPSIAAASVLAKVARDDLIKRMAEKYPQYGLEKHVGYGTALHRAAISKFGKTKLHRKTF 186


>gi|256390717|ref|YP_003112281.1| ribonuclease H [Catenulispora acidiphila DSM 44928]
 gi|256356943|gb|ACU70440.1| Ribonuclease H [Catenulispora acidiphila DSM 44928]
          Length = 224

 Score =  204 bits (521), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 71/200 (35%), Positives = 111/200 (55%), Gaps = 4/200 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69
           +  E  +       VAG DE GRGA AGP+V AA+IL P       G++DSK ++ + R+
Sbjct: 22  YGYERALARAGFAQVAGTDEAGRGACAGPLVAAAVILRPGASGRIPGLSDSKLLTERARD 81

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            +  +I   A+  +  +     +D   +H+A ++A+  +V  L V P   L DG  + + 
Sbjct: 82  RVRVEIEKRALSYAWVAIPAPEVDSRGLHQANIEALRRSVARLDVAPDYVLSDGFRV-DG 140

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LPC + A+ KGD ++  +AAAS++AK  RD +M    +++P YGF+ H GY T  HQ  +
Sbjct: 141 LPCPSLAMWKGDQVAACVAAASVLAKTVRDAMMTELAQRHPAYGFEIHKGYSTPAHQAAL 200

Query: 189 KEKGPSCIHRLTFRPLRNLS 208
            E GP   HR T+  + N+S
Sbjct: 201 TEHGPCPEHRFTYANVANVS 220


>gi|39934109|ref|NP_946385.1| ribonuclease HII [Rhodopseudomonas palustris CGA009]
 gi|81563831|sp|Q6NAZ6|RNH2_RHOPA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|39647957|emb|CAE26477.1| possible ribonuclease HII [Rhodopseudomonas palustris CGA009]
          Length = 304

 Score =  204 bits (521), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 89/195 (45%), Positives = 125/195 (64%), Gaps = 1/195 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E  + ++ +WP+AG DE GRG LAGPVV AA++LDP  +P G++DSK++S +KRE
Sbjct: 82  PSFRRERALIKRGIWPIAGCDEAGRGPLAGPVVAAAVVLDPKRVPKGLDDSKRLSAEKRE 141

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L+E+I ++A +S+  AS + I++ NI +A+L A+  AV  L  +PR   +DGR      
Sbjct: 142 ALFEEICATAQVSVVYASPERINRDNILRASLWALTRAVHALPDLPRHVFVDGRD-RLAT 200

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C   AVI GD +  SIAAASIIAKV+RDRLM    ++ P YGF+ H GY   +H   + 
Sbjct: 201 QCDCEAVIGGDGLIASIAAASIIAKVSRDRLMCKLAEQCPGYGFEQHKGYGVPEHLDALA 260

Query: 190 EKGPSCIHRLTFRPL 204
             GP+  HR  F P+
Sbjct: 261 RLGPTVHHRRFFAPV 275


>gi|298707143|emb|CBJ29916.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 350

 Score =  204 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 113/221 (51%), Gaps = 29/221 (13%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS-HKKREELYE 73
           E     +    V G+DE GRG  AGPVV AA ++ P+    GI DSKKI+ H  RE L++
Sbjct: 121 ENRKLAEGFDAVIGVDEAGRGPFAGPVVAAACMIPPDVNILGIQDSKKITQHSDRETLFK 180

Query: 74  KITSS--AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI----------------- 114
           ++T +   + + S      ID+ NI +AT +A+ + V  +                    
Sbjct: 181 ELTETPGVVWAASEVGSSRIDEINILEATKEAMTNCVLEVCSKSVEASANKSTNTKKKKN 240

Query: 115 ----PRSALIDGRSIPEDL---PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                   L+DG   P  L     +A  V+ GD +   IAAASIIAKVTRDRLM    ++
Sbjct: 241 TSDKKPFVLVDGNFTPPGLGDAKVEAECVVGGDGLEYCIAAASIIAKVTRDRLMIEFGER 300

Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNLS 208
           +P +GF+ H GY TA H+  I+E G   IHR +F  L+N+ 
Sbjct: 301 WPVFGFERHKGYGTAAHRDAIREHGMVEIHRRSF--LKNME 339


>gi|291288314|ref|YP_003505130.1| Ribonuclease H [Denitrovibrio acetiphilus DSM 12809]
 gi|290885474|gb|ADD69174.1| Ribonuclease H [Denitrovibrio acetiphilus DSM 12809]
          Length = 184

 Score =  204 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 70/179 (39%), Positives = 100/179 (55%), Gaps = 2/179 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             + GIDEVGRG LAGPVV  A++L  N     + DSKKIS KKR+ +   + ++AI   
Sbjct: 1   MLIVGIDEVGRGCLAGPVVAGAVLLPENFSDERLVDSKKISEKKRKIMDGVVRANAIAFG 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I + S++ ID++ I   T  A+  A+E + V     ++D   + E +        K +  
Sbjct: 61  IGAVSNEDIDRYGIVPCTKKAMMLALEQISVSYDKVIVDAVKL-EGVKVPLEHPFKAEDK 119

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
              +AAASIIAKV RD LM   H  +PDYG+ S+ GY    H + IKE G + +HR +F
Sbjct: 120 FQCVAAASIIAKVYRDALMTKLHINHPDYGWYSNKGYGAKVHIEKIKEIGLTPLHRRSF 178


>gi|73852875|ref|YP_294159.1| putative ribonuclease [Emiliania huxleyi virus 86]
 gi|72415591|emb|CAI65828.1| putative ribonuclease [Emiliania huxleyi virus 86]
          Length = 209

 Score =  204 bits (520), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 72/193 (37%), Positives = 102/193 (52%), Gaps = 8/193 (4%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKIT--SS 78
               V G+DE GRG LAGPVV  A  +  N      I DSKK++ K+R E +E +T  S+
Sbjct: 18  GDNIVVGVDEAGRGCLAGPVVAGACFVPENEPIHPLIKDSKKMTEKQRMEAFEYLTLNSN 77

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--PCQAFAV 136
                S      ID  NI  AT+ A+ + +   +     AL+DG   P+      +    
Sbjct: 78  IKCYASFIEPYEIDDINILNATMKAMGNVIN--ESGANLALVDGDKTPKMFVDTSEIQTF 135

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC- 195
           IKGDS   SI+ AS+IAKV+RD  M    K YP+YGF +H+GY T  H   I++ GP   
Sbjct: 136 IKGDSRMYSISCASVIAKVSRDLYMEELSKTYPEYGFANHMGYGTQAHMAAIEKNGPIPF 195

Query: 196 IHRLTFRPLRNLS 208
           +HR ++ P++  +
Sbjct: 196 VHRYSYAPIKKFT 208


>gi|302335674|ref|YP_003800881.1| RNase HII [Olsenella uli DSM 7084]
 gi|301319514|gb|ADK68001.1| RNase HII [Olsenella uli DSM 7084]
          Length = 259

 Score =  204 bits (520), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 71/191 (37%), Positives = 99/191 (51%), Gaps = 5/191 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           + LE  +       + G+DEVGRGALAGP+   A+ L    I +G+NDSK++S  +R  L
Sbjct: 62  YALEREL--GGEGVIVGVDEVGRGALAGPLTACAVALPGEPIIWGLNDSKQLSPARRGAL 119

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
              I   AI I ++      ID   +  A   A+  A+ +  V     LIDG   P  + 
Sbjct: 120 GATIAEHAIAIGVAHVEPASIDAVGMSVALRMAMGQAIADAGVDADCVLIDGN--PVHVH 177

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
            Q  A++KGD+    IAAASI+AKVTRD LM     +YP Y      GY +  H   I+ 
Sbjct: 178 PQERALVKGDARVACIAAASIVAKVTRDSLMVAYDSEYPGYHLAECKGYGSPAHIDAIRR 237

Query: 191 KGPSCIHRLTF 201
            G + IHR++F
Sbjct: 238 LGLTPIHRVSF 248


>gi|254519206|ref|ZP_05131262.1| ribonuclease HII [Clostridium sp. 7_2_43FAA]
 gi|226912955|gb|EEH98156.1| ribonuclease HII [Clostridium sp. 7_2_43FAA]
          Length = 270

 Score =  204 bits (520), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 81/190 (42%), Positives = 114/190 (60%), Gaps = 8/190 (4%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSS 78
              +AG+DEVGRG LAGP+V  A+ILD     + +   +NDSKK+S KKRE L E I   
Sbjct: 83  HTYIAGVDEVGRGPLAGPIVACAVILDLNVIEDELILWLNDSKKLSEKKREALAEIIKEK 142

Query: 79  AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137
           A+   IS +S+  ID+  I     +    A  ++++ P   L DG  + + +     +VI
Sbjct: 143 ALAYFISESSNDEIDEKGIAYCNNNIFLEACTSMKIKPELVLSDGY-LIKGINIPNKSVI 201

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGD+ S SIAAASI+AKV RD LM+   K+YP Y F+ + GY T+KH + +KE G   IH
Sbjct: 202 KGDAKSASIAAASILAKVYRDNLMKDYSKEYPHYAFEENAGYGTSKHIEGLKEFGACKIH 261

Query: 198 RLTFRPLRNL 207
           R +F  L+N+
Sbjct: 262 RRSF--LKNI 269


>gi|283481616|emb|CAZ69732.1| putative ribonuclease [Emiliania huxleyi virus 99B1]
          Length = 209

 Score =  204 bits (519), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 73/193 (37%), Positives = 103/193 (53%), Gaps = 8/193 (4%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKIT--SS 78
               V G+DE GRG LAGPVV  A  +  N      I DSKK++ K+R E +E +T  S+
Sbjct: 18  GDNIVVGVDEAGRGCLAGPVVAGACFVPENEPIHPLIKDSKKMTEKQRMEAFEYLTLNSN 77

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--PCQAFAV 136
                S      ID  NI KAT+ A+ + +   +     AL+DG   P+      +    
Sbjct: 78  IKCYASFIEPYEIDDINILKATMKAMGNVIN--ESGANLALVDGDKTPKMFVDTSEIQTF 135

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC- 195
           IKGDS   SI+ AS+IAKV+RD  M    K YP+YGF +H+GY T  H   I++ GP   
Sbjct: 136 IKGDSRMYSISCASVIAKVSRDLYMEELSKTYPEYGFSNHMGYGTQAHMAAIEKNGPIPF 195

Query: 196 IHRLTFRPLRNLS 208
           +HR ++ P++  +
Sbjct: 196 VHRYSYAPIKKFT 208


>gi|166364262|ref|YP_001656535.1| ribonuclease HII [Microcystis aeruginosa NIES-843]
 gi|189043628|sp|B0JV09|RNH2_MICAN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166086635|dbj|BAG01343.1| ribonuclease HII [Microcystis aeruginosa NIES-843]
          Length = 208

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 76/192 (39%), Positives = 106/192 (55%), Gaps = 18/192 (9%)

Query: 25  PVAGIDEVGRGALAGPV-----------VVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            +AG+DEVGRGAL GPV                         G+ DSK++S +KR++L  
Sbjct: 6   LIAGVDEVGRGALFGPVVAAVVVTVPSGFA-------RLWELGVKDSKQLSPQKRQKLSR 58

Query: 74  KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           +I    +  I  A+ + ID+ NI  A+L A+  A+  L + P    +DG+ I +DL    
Sbjct: 59  QIQRDFVCRIGYATVKEIDRLNIFHASLLAMSRAIGKLPLSPSLCWVDGKHIIKDLSIPQ 118

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            AVI+GD  S  IAAASI+AKV RD L+   H++YPDYG   H GY TA+H + I   G 
Sbjct: 119 KAVIQGDQQSPVIAAASIVAKVWRDDLITRWHRRYPDYGLARHKGYGTAQHLEAIGNYGL 178

Query: 194 SCIHRLTFRPLR 205
           +  HRL+F P +
Sbjct: 179 TSQHRLSFSPCQ 190


>gi|256419897|ref|YP_003120550.1| ribonuclease H [Chitinophaga pinensis DSM 2588]
 gi|256034805|gb|ACU58349.1| Ribonuclease H [Chitinophaga pinensis DSM 2588]
          Length = 220

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 1/190 (0%)

Query: 16  AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
               +K++   AG DE GRG LAGPV  AA+IL P      +NDSK++    R++L E +
Sbjct: 3   RSYHQKDIAFEAGCDEAGRGCLAGPVFAAAVILPPKFRNKLLNDSKQLKASDRDKLREVV 62

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
              AI  +++S  +  ID+ NI KA+  A++ A++ L+  P   L+DG            
Sbjct: 63  EKEAIAYAVASVDNLEIDRINILKASFRAMHLALDQLKQQPGYILVDGNRFVPYGKTPHA 122

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            ++KGD I  SIAAASI+AK  RD  M   H++YP +G+  + GYPT  H+  I+  G +
Sbjct: 123 CIVKGDGIYASIAAASILAKTYRDEYMHKLHQEYPHFGWLENKGYPTLFHRDAIRAHGET 182

Query: 195 CIHRLTFRPL 204
             HR TFR L
Sbjct: 183 PYHRKTFRLL 192


>gi|319950993|ref|ZP_08024863.1| ribonuclease HII [Dietzia cinnamea P4]
 gi|319435336|gb|EFV90586.1| ribonuclease HII [Dietzia cinnamea P4]
          Length = 235

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 80/199 (40%), Positives = 119/199 (59%), Gaps = 4/199 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKR 68
              LEA +  + + PVAG+DE GRG+ AGP+VVAA +L     P    ++DSKK++   R
Sbjct: 27  RLALEAALTRRGLGPVAGVDEAGRGSCAGPLVVAACVLGDRLHPELADLDDSKKLTAAAR 86

Query: 69  EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           + L++ +   A  +S+       ID   IH+  ++ +  AV  L   P   L DG ++ +
Sbjct: 87  DRLHDAVLRRARAVSVVVIEPDRIDARGIHRCNIEGMRRAVAALDPRPGFVLTDGFAV-D 145

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            L CQ+ AVI GD++  SIAAAS++AKVTRDR+M     +YP YGF +H GY T  H + 
Sbjct: 146 GLGCQSTAVIGGDAVVASIAAASVLAKVTRDRIMVDLDSRYPGYGFAAHKGYSTTGHARA 205

Query: 188 IKEKGPSCIHRLTFRPLRN 206
           I++ GPS IHR+++  +R 
Sbjct: 206 IEQLGPSDIHRMSYANVRR 224


>gi|291299696|ref|YP_003510974.1| ribonuclease H [Stackebrandtia nassauensis DSM 44728]
 gi|290568916|gb|ADD41881.1| Ribonuclease H [Stackebrandtia nassauensis DSM 44728]
          Length = 211

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 74/196 (37%), Positives = 109/196 (55%), Gaps = 4/196 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKRE 69
           + LE  +R +    VAG DE GRGA AGP+VVAA IL         G+ DSK ++ + RE
Sbjct: 2   YVLENALRRRGFTLVAGADEAGRGACAGPLVVAAAILPDGARGQIAGLTDSKLLTERARE 61

Query: 70  ELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           ++Y ++   A+  +I   S   +D+  +  + L  +  A+  L  +P  AL DG  +P  
Sbjct: 62  DIYAQVVDRAVAHAIVVISPAEVDRLGVGASNLSGMRRALARLDPMPAYALTDGFPVP-G 120

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           LP     V KGD ++  +AAAS++AKVTRDR+M    + +P YGF  H GY TA H   +
Sbjct: 121 LPVPGLGVWKGDRVAACVAAASVLAKVTRDRIMTELEQNHPGYGFAEHKGYGTAAHTHAL 180

Query: 189 KEKGPSCIHRLTFRPL 204
           +  GP   HRL++  +
Sbjct: 181 RTLGPCPQHRLSYANV 196


>gi|87199856|ref|YP_497113.1| ribonuclease H [Novosphingobium aromaticivorans DSM 12444]
 gi|97189114|sp|Q2G794|RNH2_NOVAD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|87135537|gb|ABD26279.1| RNase HII [Novosphingobium aromaticivorans DSM 12444]
          Length = 196

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/200 (35%), Positives = 101/200 (50%), Gaps = 25/200 (12%)

Query: 27  AGIDEVGRGALAGP-------VVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
            G+DE GRG LAGP       +        P   P G++DSKK+S  +R EL EKI    
Sbjct: 4   IGVDEAGRGPLAGPVVAAAVVL------CKPR--PSGLDDSKKLSAARRAELEEKIKRRC 55

Query: 80  IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS------ALIDGRSIP----EDL 129
             ++       ID+ NI  AT+ A+  AV  L             L+DG   P     + 
Sbjct: 56  RWAVGVVEPDEIDRLNIFGATMLAMTLAVGALCEQLAHDEDVGEVLVDGNLTPHGRRPEW 115

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
              A  ++ GD++   I+AASIIAK  RDRLMR A   +P YG++ + GY T +H   ++
Sbjct: 116 CWPARPIVGGDALEPCISAASIIAKEHRDRLMREAALAHPHYGWERNAGYGTPEHLAALR 175

Query: 190 EKGPSCIHRLTFRPLRNLSV 209
           E GP+ +HR +F P+  L +
Sbjct: 176 EHGPTPLHRRSFAPVAQLQL 195


>gi|190573489|ref|YP_001971334.1| putative ribonuclease HII [Stenotrophomonas maltophilia K279a]
 gi|190011411|emb|CAQ45029.1| putative ribonuclease HII [Stenotrophomonas maltophilia K279a]
          Length = 223

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 112/185 (60%), Gaps = 2/185 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-I 81
             VAG+DE GRG LAGPV VAA++ DP      G++DSK+++  +RE+L+++I   A+  
Sbjct: 24  RLVAGVDEAGRGPLAGPVAVAAVVFDPARPRINGLDDSKQLTAARREQLHDRIIERALAW 83

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
            +       ID+ NI++ATL  +   V  +  +   A IDG  +P+ L   A A++ GD 
Sbjct: 84  HVVLVDVDTIDRLNIYQATLQGMRDVVAAVAHVAGFARIDGNVVPKGLVLPAQALVGGDG 143

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           I  +I AASI+AKV+RDR M+  H ++P YGF+ H GY T  H   ++E GP   HR +F
Sbjct: 144 IDRAIMAASILAKVSRDRYMQDVHARHPQYGFEHHKGYGTPAHLAALREHGPCMEHRRSF 203

Query: 202 RPLRN 206
            P+R 
Sbjct: 204 APVRE 208


>gi|239982734|ref|ZP_04705258.1| ribonuclease HII [Streptomyces albus J1074]
 gi|291454583|ref|ZP_06593973.1| ribonuclease HII [Streptomyces albus J1074]
 gi|291357532|gb|EFE84434.1| ribonuclease HII [Streptomyces albus J1074]
          Length = 233

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/202 (35%), Positives = 105/202 (51%), Gaps = 2/202 (0%)

Query: 8   ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           E P   +E  +R       VAG+DEVGRGA AGPV V A +      P G+ DSK ++ K
Sbjct: 4   ESPTHTVERSLRATTGAKIVAGVDEVGRGAWAGPVSVCAAVTGLRRAPEGLTDSKLLAPK 63

Query: 67  KREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R  L  ++       +   +S + ID   +  A   A   A+E L V P + ++DG+  
Sbjct: 64  RRTALAGELEGWVTAYAFGHSSPEEIDDLGMTAALRLAAVRALEGLPVRPDAVILDGKHD 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
               P +   VIKGD   + +AAAS++AKV RD +M      + D+ F  + GYP+  HQ
Sbjct: 124 YLGAPWKVRTVIKGDQSCVCVAAASVLAKVRRDAMMAELGVGHEDFCFADNAGYPSPAHQ 183

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
             + E+GP+  HRL++  L  L
Sbjct: 184 AALAERGPTPYHRLSWAYLDAL 205


>gi|121998236|ref|YP_001003023.1| ribonuclease HII [Halorhodospira halophila SL1]
 gi|189043603|sp|A1WX09|RNH2_HALHL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|121589641|gb|ABM62221.1| RNase HII [Halorhodospira halophila SL1]
          Length = 195

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/191 (39%), Positives = 106/191 (55%), Gaps = 5/191 (2%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
            +  W V G+DE GRG  AGP  V A  +       G+ DSK++S + RE     I S A
Sbjct: 4   SRGAWGVVGVDEAGRGPWAGP--VVAAAVVLAEPIAGVTDSKRLSARSRERAAALIRSEA 61

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQV--IPRSALIDGRSIPEDLPCQAFAV 136
           +   +  A    ID  NI +AT  A+  AV  +         L+DGR IP+DLP  A  V
Sbjct: 62  VAWGVGRADVTEIDALNIRRATFLAMARAVAVVAETSPIAEVLVDGREIPDDLPAPARPV 121

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           + GD++  +I+AASI+AK  RD  M +  + YP YGF  H GY TA+H++ ++E GP  +
Sbjct: 122 VGGDALEPAISAASILAKTLRDAEMVLLDEAYPGYGFGRHKGYGTAEHRRALEELGPCPM 181

Query: 197 HRLTFRPLRNL 207
           HR +F P+R L
Sbjct: 182 HRRSFAPVRRL 192


>gi|318042659|ref|ZP_07974615.1| ribonuclease HII [Synechococcus sp. CB0101]
          Length = 200

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/185 (36%), Positives = 99/185 (53%), Gaps = 6/185 (3%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS 78
           +  +AG+DEVGRG   GPV   A+IL  +        G+ DSKK++ ++R +L   I   
Sbjct: 9   LQRIAGVDEVGRGCWFGPVFAGAVILPASARSALAAAGLTDSKKLTARRRAQLVPLIQQH 68

Query: 79  AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ-VIPRSALIDGRSIPEDLPCQAFAV 136
           A   ++  AS + ID+  I  AT  A+  A++ L    P   L+DG             V
Sbjct: 69  AESWALGQASAREIDQVGIRAATERAMLRALQRLSAPPPGLVLVDGVLPLRLWEGPQQTV 128

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           ++GDS  L IAAAS++AK  RD L+     +YP YG + H GY TA H+  + E GP+ +
Sbjct: 129 VRGDSEHLEIAAASVLAKQARDALITRLAARYPAYGLERHAGYGTALHRAAVLEAGPTPL 188

Query: 197 HRLTF 201
           HR +F
Sbjct: 189 HRRSF 193


>gi|317121802|ref|YP_004101805.1| ribonuclease H [Thermaerobacter marianensis DSM 12885]
 gi|315591782|gb|ADU51078.1| Ribonuclease H [Thermaerobacter marianensis DSM 12885]
          Length = 327

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 79/184 (42%), Positives = 109/184 (59%), Gaps = 2/184 (1%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
             VAG+DEVGRG LAGPVV AA+IL  +    G++DSK++    R+ L   +   A+  +
Sbjct: 112 GRVAGVDEVGRGCLAGPVVAAAVILSGDACLPGLDDSKRLKPAARDGLAAAVRRQALAWA 171

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +  A+   ID  NI  AT  A+  A++ L V P+  ++DGRS P DL     AV+ GD+ 
Sbjct: 172 VGIATPAEIDALNIWHATRLAMRRALDALPVPPQRVVVDGRS-PGDLGYPVEAVVDGDAR 230

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             +IAAAS++AKV RD  M    + YP YGF  H GY TA+H+Q +   GP   HR +F 
Sbjct: 231 FAAIAAASVVAKVFRDAWMARLDRVYPVYGFARHKGYATAEHRQALALYGPCPEHRRSFL 290

Query: 203 PLRN 206
           P+R 
Sbjct: 291 PVRQ 294


>gi|298530722|ref|ZP_07018124.1| Ribonuclease H [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510096|gb|EFI34000.1| Ribonuclease H [Desulfonatronospira thiodismutans ASO3-1]
          Length = 214

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 73/198 (36%), Positives = 103/198 (52%), Gaps = 24/198 (12%)

Query: 20  EKNMWPV--AGIDEVGRGALAGPVVVAAIILDP---------NNIPFGINDSKKISHKKR 68
           +    PV  AG+DE GRG LAG                    +     + DSKKI+ K R
Sbjct: 14  QSGFDPVPPAGLDEAGRGCLAG---------PVVAAVVVLPLDAQIARLTDSKKITSKVR 64

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIP 126
           E L  +I S+ +  S+  A  + ID+ NI +AT+ A+  AV +L + P   L+DG   IP
Sbjct: 65  ESLIPEIKSTCLAWSLGLAWPREIDRINILQATMTAMKRAVLHLGLTPGQLLVDGNQKIP 124

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            ++P     ++ GD     I+AASI+AK  RD LM    ++YP YGF  H GY T KH Q
Sbjct: 125 LNIP--QKCIVGGDMTEPCISAASILAKTFRDMLMTKLDRRYPGYGFGQHKGYGTRKHLQ 182

Query: 187 VIKEKGPSCIHRLTFRPL 204
            +K  G S +HR +F+ +
Sbjct: 183 ALKSLGASPMHRKSFKGV 200


>gi|72382906|ref|YP_292261.1| ribonuclease HII [Prochlorococcus marinus str. NATL2A]
 gi|97189164|sp|Q46IX0|RNH2_PROMT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|72002756|gb|AAZ58558.1| RNase HII [Prochlorococcus marinus str. NATL2A]
          Length = 195

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/182 (37%), Positives = 102/182 (56%), Gaps = 5/182 (2%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI 80
            +AG+DEVG+G L GPV  AA+IL   N       G+ DSKK+S ++R  L   I +++I
Sbjct: 7   LIAGVDEVGKGCLFGPVFAAAVILSKKNEIELLNQGLKDSKKLSQRQRHNLVPLIKTNSI 66

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             +I  AS + ID   I  AT  A+  A+E     P   L+DG       P +    ++G
Sbjct: 67  AWTIGQASAREIDVMGIRDATEKAMLRALEKFSSPPDLILVDGILPIRLWPGKQKTQVRG 126

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           +S   SIAAAS++AK TRD L++   +KY  YG + + GY T  H+  + ++G + +HR 
Sbjct: 127 ESHFASIAAASVLAKETRDELIKRLARKYNCYGLEKNKGYGTEIHRTKLIKEGATKLHRK 186

Query: 200 TF 201
           +F
Sbjct: 187 SF 188


>gi|257055033|ref|YP_003132865.1| RNase HII [Saccharomonospora viridis DSM 43017]
 gi|256584905|gb|ACU96038.1| RNase HII [Saccharomonospora viridis DSM 43017]
          Length = 275

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 77/194 (39%), Positives = 111/194 (57%), Gaps = 4/194 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKR 68
            + L+A +  + + PV G+DE GRGA AGP+VVAA +L P +      + DSK ++   R
Sbjct: 16  SWALQAALDRRGLGPVVGVDEAGRGACAGPLVVAACVLRPGDGAKLPELADSKSLTPLAR 75

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           + +YE+I   A+  SI       ID   +H A ++ +  AV  L   P   L+DG  +P 
Sbjct: 76  DRVYERILRRALDYSIVVIPPAEIDVQGVHTANIEGMRRAVAALSQRPGYVLLDGFRVP- 134

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            LP  +  V+KGD     +AAAS++AKVTRDR+M   H +YP YGF+ H GY T +H+  
Sbjct: 135 GLPAPSVPVLKGDRAVACVAAASVLAKVTRDRIMVGLHAEYPVYGFEVHKGYTTVEHRTA 194

Query: 188 IKEKGPSCIHRLTF 201
           + E GP   HR +F
Sbjct: 195 LAEHGPCEAHRWSF 208


>gi|88807950|ref|ZP_01123461.1| Ribonuclease HII and HIII [Synechococcus sp. WH 7805]
 gi|88787989|gb|EAR19145.1| Ribonuclease HII and HIII [Synechococcus sp. WH 7805]
          Length = 194

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/181 (37%), Positives = 102/181 (56%), Gaps = 5/181 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA-I 80
           + G+DEVGRG L GPV  AA+ L  +        G+ DSK +S ++R +L  +I + A  
Sbjct: 2   IVGVDEVGRGCLFGPVFAAAVSLTESAAAELTALGLTDSKALSARRRVDLVPQIQAKASA 61

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            ++   S + ID H I  AT  A+  A++ L   P   L+DG            ++++GD
Sbjct: 62  WALGQGSAREIDAHGIRVATELAMLRALQKLPKHPELVLVDGVLPLRLWAGDQRSIVRGD 121

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S   SIAAAS++AKVTRD LM+   +++P YG + H GY T  H+Q +   GP+ +HR +
Sbjct: 122 SKEASIAAASVLAKVTRDGLMQRLAERFPGYGLERHAGYGTVLHRQSLLAAGPTSMHRRS 181

Query: 201 F 201
           F
Sbjct: 182 F 182


>gi|16329251|ref|NP_439979.1| ribonuclease HII [Synechocystis sp. PCC 6803]
 gi|7227925|sp|P72657|RNH2_SYNY3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|1651731|dbj|BAA16659.1| ribonuclease HII [Synechocystis sp. PCC 6803]
          Length = 190

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 72/177 (40%), Positives = 105/177 (59%), Gaps = 5/177 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI-I 81
           AG+DEVGRGAL GPVV AA+++    I      G+ DSK++S + R +L + +       
Sbjct: 2   AGVDEVGRGALFGPVVAAAVLVPIEAINQLQALGVKDSKQLSPQHRSQLAQALPDYVHSY 61

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
            IS A    I++ NI +A+L A+  AV+ L V+P   L+DGR     +     AV  GD 
Sbjct: 62  GISFADVPTINRVNIRQASLLAMERAVQKLPVMPAWVLVDGRDTLPHIAMAQMAVTGGDR 121

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
            SL I+AASI+AKV RD L+    +++P Y   S+ GY TAKH+Q +++ G + +HR
Sbjct: 122 KSLLISAASILAKVWRDTLITRLAERFPGYDLASNKGYGTAKHRQGLRQYGATPLHR 178


>gi|326387694|ref|ZP_08209300.1| ribonuclease H [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207740|gb|EGD58551.1| ribonuclease H [Novosphingobium nitrogenifigens DSM 19370]
          Length = 198

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 73/189 (38%), Positives = 104/189 (55%), Gaps = 9/189 (4%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
             V G+DE GRG LAGPVV AA+IL     P G+ DSKK++ ++R  L   I  +    +
Sbjct: 5   GLVVGVDEAGRGPLAGPVVAAAVILGAGA-PQGLADSKKLTARRRAWLEVGIKETCRWGL 63

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENL----QVIPRSALIDGRSIP----EDLPCQAFA 135
                  ID+ NI  AT+ A+  AV +L      +    LIDG   P          A A
Sbjct: 64  GVVEADEIDRINIFAATMKAMTLAVADLLDRDGGVVEMVLIDGNKTPAGRDPGWVWPARA 123

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           ++ GD+   +I+AASI+AK  RDR+MR A +K+P YG++ + GY T +H   ++E GP  
Sbjct: 124 IVGGDATEAAISAASILAKEHRDRIMRDAAQKWPQYGWERNAGYGTPEHLAALREHGPCV 183

Query: 196 IHRLTFRPL 204
            HR +F P+
Sbjct: 184 FHRRSFAPV 192


>gi|124026648|ref|YP_001015763.1| ribonuclease HII and HIII [Prochlorococcus marinus str. NATL1A]
 gi|166226636|sp|A2C4T9|RNH2_PROM1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|123961716|gb|ABM76499.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. NATL1A]
          Length = 195

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 69/182 (37%), Positives = 103/182 (56%), Gaps = 5/182 (2%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI 80
            +AG+DEVG+G L GPV  AA+IL   N       G+ DSKK+SH++R  L   I +++I
Sbjct: 7   LIAGVDEVGKGCLFGPVFAAAVILSKENEIELLNQGLKDSKKLSHRQRHNLVPLIKTNSI 66

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
             +I  AS + ID   I  AT  A+  A+E     P   L+DG       P +    ++G
Sbjct: 67  AWTIGQASAREIDVIGIRDATEKAMLRALEKFSSPPDLILVDGILPIRLWPGKQKTQVRG 126

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           +S   SIAAAS++AK TRD L++   +KY  YG + + GY T  H+  + ++G + +HR 
Sbjct: 127 ESHFASIAAASVLAKETRDELIKRLARKYNCYGLEKNKGYGTEIHRTNLIKEGATKLHRK 186

Query: 200 TF 201
           +F
Sbjct: 187 SF 188


>gi|262167732|ref|ZP_06035434.1| ribonuclease HII [Vibrio cholerae RC27]
 gi|262023797|gb|EEY42496.1| ribonuclease HII [Vibrio cholerae RC27]
          Length = 157

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 70/153 (45%), Positives = 95/153 (62%), Gaps = 2/153 (1%)

Query: 55  FGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQV 113
            G+NDSKK+S KKR  L+ +I   A+  ++   S Q ID+ NI +AT+ A+  AV  L++
Sbjct: 1   MGLNDSKKLSEKKRLALFPEIQVKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRI 60

Query: 114 IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173
            P   LIDG  IP+ LP +A AV+KGD     I+AASIIAKV RD+ M    K+YP +GF
Sbjct: 61  QPDLVLIDGNKIPK-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGF 119

Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
             H GYPTA H   I++ G    HR +F P++ 
Sbjct: 120 AKHKGYPTAAHFAAIEQHGVIEQHRKSFGPVKR 152


>gi|157164148|ref|YP_001467724.1| ribonuclease HII [Campylobacter concisus 13826]
 gi|189043572|sp|A7ZG16|RNH2_CAMC1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|112800307|gb|EAT97651.1| ribonuclease HII [Campylobacter concisus 13826]
          Length = 184

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 73/179 (40%), Positives = 100/179 (55%), Gaps = 7/179 (3%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82
           M  + GIDE GRGALAGP+ VAA +L  N+   G+NDSKK++ K+REEL++KIT S+   
Sbjct: 1   MAKICGIDEAGRGALAGPLSVAACVL--NSEISGLNDSKKLTAKRREELFKKITKSSNFL 58

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           I+  S+  ID+  + +    A+     + +      + DG     D       +IK D  
Sbjct: 59  IAYFSNAQIDELGLSECLRRALKLFKAHFESF--EIIYDGN---LDYGVGITTMIKADGK 113

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
              ++AASI+AKV+RDRLM    K YP YGF  H GY T  H   I + G S  HR +F
Sbjct: 114 VAGVSAASILAKVSRDRLMNGWDKFYPAYGFAGHKGYGTKSHLDAIAKFGYSDFHRKSF 172


>gi|282856252|ref|ZP_06265535.1| ribonuclease HII [Pyramidobacter piscolens W5455]
 gi|282586011|gb|EFB91296.1| ribonuclease HII [Pyramidobacter piscolens W5455]
          Length = 186

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 69/187 (36%), Positives = 103/187 (55%), Gaps = 11/187 (5%)

Query: 24  WPVAGIDEVGRGALAGP-------VVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76
             + G+DE GRG LAGP       +  A      + +  G+ DSKK++  +RE+++ ++ 
Sbjct: 1   MILVGVDEAGRGPLAGPVVAAAVVLTEA---QREDLVGLGLRDSKKMTPPRREKVFARML 57

Query: 77  S-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135
             + +   +SA  + ID+ NI +ATL A+  AVE L +     ++DG      L     A
Sbjct: 58  ELNVVWRAASAPAERIDRLNILRATLWAMRRAVEKLPLDVDGVIVDGNQEIPGLSVYQQA 117

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           +I GD I   I+AAS++AKV RDR+M +    YPDY F  H GY T  H++ I E GP+ 
Sbjct: 118 IIGGDDIYPQISAASVVAKVLRDRVMTVYDGIYPDYDFARHKGYGTEAHRRAIAELGPTP 177

Query: 196 IHRLTFR 202
           IHR +F 
Sbjct: 178 IHRRSFS 184


>gi|152993838|ref|YP_001359559.1| ribonuclease HII [Sulfurovum sp. NBC37-1]
 gi|189043667|sp|A6QCJ3|RNH2_SULNB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|151425699|dbj|BAF73202.1| ribonuclease HII [Sulfurovum sp. NBC37-1]
          Length = 188

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 66/183 (36%), Positives = 94/183 (51%), Gaps = 7/183 (3%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           P+ GIDE GRG LAG +V+A ++L       G+ DSKK++ K+RE LY  +  +A   I 
Sbjct: 7   PLCGIDEAGRGPLAGALVMAGVVLKK--PIDGLMDSKKLTEKRREALYTIVLENAEYHIV 64

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           S S + +D   I K     +      L       L DG S           ++K D    
Sbjct: 65  SFSAKEVDDLGISKCLQKGLQSIQNALDG--CKYLFDGNSTFGV--DNVSTMVKADDKVP 120

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            ++AASI+AKVTRDR M    + YP+YGF+ H GY T  H + + +     IHR +FR +
Sbjct: 121 EVSAASILAKVTRDREMIKMAEIYPEYGFEKHKGYGTKAHIEALMKYDRCEIHRRSFR-V 179

Query: 205 RNL 207
           + L
Sbjct: 180 KGL 182


>gi|83594539|ref|YP_428291.1| ribonuclease HII [Rhodospirillum rubrum ATCC 11170]
 gi|97189243|sp|Q2RPE1|RNH2_RHORT RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|83577453|gb|ABC24004.1| Ribonuclease H [Rhodospirillum rubrum ATCC 11170]
          Length = 218

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 80/204 (39%), Positives = 113/204 (55%), Gaps = 11/204 (5%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKIS 64
            P   LE     +    VAG+DEVGRG LAGPVV AA+++D       +   ++DSKK+S
Sbjct: 1   MPDLSLERACGGR----VAGVDEVGRGPLAGPVVAAAVVIDAGRADPALLARLDDSKKLS 56

Query: 65  HKKREELYEKITSS--AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
              R+ L   + +     + +  AS   ID+ NI +AT  A+  A+  L      AL+DG
Sbjct: 57  AALRQRLATALLADPGVEVGLGEASVAEIDRINILQATFLAMGRALAKLAPPVDLALVDG 116

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
             +P  LPC   AV++GD +SLSIAAASI+AKV RD  M    +  P YG++ + GY TA
Sbjct: 117 NRLPP-LPCPGQAVVRGDGLSLSIAAASIVAKVHRDAAMATLAQALPGYGWERNAGYGTA 175

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRN 206
           +H   +   G +  HR +F P+R 
Sbjct: 176 EHLAALDRLGATPHHRASFAPVRE 199


>gi|154148444|ref|YP_001406026.1| ribonuclease HII [Campylobacter hominis ATCC BAA-381]
 gi|189043574|sp|A7I0I5|RNH2_CAMHC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|153804453|gb|ABS51460.1| ribonuclease HII [Campylobacter hominis ATCC BAA-381]
          Length = 185

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 66/177 (37%), Positives = 94/177 (53%), Gaps = 6/177 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           + GIDE GRG LAGP+ +A  IL  N    G+ DSKK+S K+RE LYE+I  ++   I  
Sbjct: 3   ICGIDEAGRGPLAGPLHIAGCIL--NKQIEGLKDSKKLSEKRREILYEEIIKNSTYKIVK 60

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF-AVIKGDSISL 144
            S   IDK  + K     +   V+         + DG S       + F  ++K D    
Sbjct: 61  FSAAQIDKFGLSKCLKLGLNELVDFFAPFEVKIIFDGNS---KFGAEGFETMVKADDKIK 117

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            ++AASI+AKV+RDR+MR    K+P Y F  + GY +  H + I++ G   IHR +F
Sbjct: 118 EVSAASILAKVSRDRVMRNFDIKFPFYDFAKNKGYGSKAHIEAIQKYGYCEIHRKSF 174


>gi|150016066|ref|YP_001308320.1| ribonuclease HII [Clostridium beijerinckii NCIMB 8052]
 gi|189043579|sp|A6LSN4|RNH2_CLOB8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|149902531|gb|ABR33364.1| Ribonuclease H [Clostridium beijerinckii NCIMB 8052]
          Length = 270

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 86/216 (39%), Positives = 126/216 (58%), Gaps = 20/216 (9%)

Query: 5   SIPERPHFELEAMVRE--------------KNMWPVAGIDEVGRGALAGPVVVAAIILD- 49
           S+ E+   +LE+ + E               +   +AG+DEVGRG LAGP+V  ++ILD 
Sbjct: 51  SLKEKIEKDLESYLNEVKRVKTMYEFDKSFGSYRYIAGVDEVGRGPLAGPIVACSVILDL 110

Query: 50  ---PNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIY 105
                ++   INDSKK+   KREEL E I   A+   I+ +S++ ID+  I  A      
Sbjct: 111 NVLEKDLILYINDSKKVKEHKREELSEIIKEKALSYQIAVSSNKEIDEKGIAFANNKVFL 170

Query: 106 HAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165
            +  +L + P   L DG  + +++  +  +VIKGD+ S SIAAASI+AKV RDRLM+   
Sbjct: 171 ESCNSLSIKPDLVLSDGY-LIKNIGIENKSVIKGDTKSASIAAASIVAKVYRDRLMKEYA 229

Query: 166 KKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           KKYP Y F+++VGY T+KH + +K+ G S IHR +F
Sbjct: 230 KKYPHYDFENNVGYGTSKHIEGLKKYGKSDIHRNSF 265


>gi|159904166|ref|YP_001551510.1| ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9211]
 gi|159889342|gb|ABX09556.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9211]
          Length = 196

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 68/181 (37%), Positives = 109/181 (60%), Gaps = 5/181 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI- 80
           +AG+DEVG+G L GPV  AA++L+ ++       G+ DSK ++  KR +L+ +I   A  
Sbjct: 7   IAGLDEVGKGCLFGPVFAAAVMLNNSSENQLLDAGLKDSKLLTKAKRAQLFPEILKLADN 66

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             I  AS + ID   I KAT  A+  A+  L + P   LIDG             +I+G+
Sbjct: 67  WGIGQASAKEIDSQGIRKATEKAMLRAIHKLTIHPSLLLIDGSLPLRLWKGNQENLIRGE 126

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S S +IAAAS+IAK +RD++++   K++P YG +++VGY T+ H++ + + GP+ +HR +
Sbjct: 127 SKSPAIAAASVIAKESRDQVIKRLAKQFPGYGLETNVGYGTSNHRKALIKSGPTQLHRKS 186

Query: 201 F 201
           F
Sbjct: 187 F 187


>gi|330466295|ref|YP_004404038.1| ribonuclease H [Verrucosispora maris AB-18-032]
 gi|328809266|gb|AEB43438.1| ribonuclease H [Verrucosispora maris AB-18-032]
          Length = 270

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 71/200 (35%), Positives = 110/200 (55%), Gaps = 4/200 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69
           + LE  ++ +    VAG DE GRGA AGP+V AA +L         G+ DSK ++   RE
Sbjct: 16  YALERALQRRGFRYVAGADEAGRGACAGPLVAAAAVLPEGRRGEIDGLADSKLLTPASRE 75

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            +Y+++ + A+  ++     + +D   +H   L A+  A+ +L V P   L DG  + + 
Sbjct: 76  RVYDEVVARALAYAVVVIPAEEVDARGLHVCNLAAMRRALASLTVRPEYVLTDGFGV-DG 134

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L     AV KGD ++  +AAAS++AKVTRDR+M     ++P YGF  H GY TA H   +
Sbjct: 135 LDVPGLAVWKGDRVAACVAAASVLAKVTRDRIMVDLDAEHPGYGFAEHKGYITADHTAAL 194

Query: 189 KEKGPSCIHRLTFRPLRNLS 208
           +E GP   HR ++  +  +S
Sbjct: 195 REHGPCREHRFSYVNVAAVS 214


>gi|134102484|ref|YP_001108145.1| ribonuclease HII [Saccharopolyspora erythraea NRRL 2338]
 gi|189043652|sp|A4FME5|RNH2_SACEN RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|133915107|emb|CAM05220.1| ribonuclease HII [Saccharopolyspora erythraea NRRL 2338]
          Length = 228

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 79/194 (40%), Positives = 114/194 (58%), Gaps = 4/194 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREEL 71
           +++ +  + + PVAG+DE GRGA AGP+VVAA  L P       G+ DSK +S  +RE L
Sbjct: 1   MQSALDRRGLGPVAGVDEAGRGACAGPLVVAACALKPGDGRRFEGLTDSKVLSPAERERL 60

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y+ I + A+ +S+       +D   IH A L+ +  AV  L V P   L DG  +P  L 
Sbjct: 61  YDVIQAKALSLSVIVIPADEVDALGIHVANLEGMRRAVAQLSVAPGYVLTDGFRVP-GLG 119

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             + AV+KGD ++  +AAAS++AKVTRDR+M   H+++P YGFD H GY T+ H   + E
Sbjct: 120 APSVAVVKGDLVAACVAAASVLAKVTRDRIMTGLHEQFPVYGFDEHKGYCTSDHTARLTE 179

Query: 191 KGPSCIHRLTFRPL 204
            GP   HR  +  +
Sbjct: 180 HGPCEEHRWCYANV 193


>gi|152965373|ref|YP_001361157.1| ribonuclease H [Kineococcus radiotolerans SRS30216]
 gi|189043607|sp|A6W7V4|RNH2_KINRD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|151359890|gb|ABS02893.1| Ribonuclease H [Kineococcus radiotolerans SRS30216]
          Length = 262

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 71/219 (32%), Positives = 99/219 (45%), Gaps = 26/219 (11%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKK 67
           P   LE          VAG+DEVGRG+LAGPV V  +++D      P G+ DSK ++   
Sbjct: 10  PSLRLERQFLRAGHALVAGVDEVGRGSLAGPVSVGVLVVDAATRTAPTGLRDSKLLTPAA 69

Query: 68  REELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI- 125
           RE L  K+   A+ S +  A    ID   I  A   A   A+  L V P   ++DG    
Sbjct: 70  REALAPKVRRWAVASAVGHAEPGEIDAVGIVAALRLAGRRALAQLPVPPDLVILDGNHDW 129

Query: 126 -------------------PEDLPCQAFAV---IKGDSISLSIAAASIIAKVTRDRLMRI 163
                                 LPC A AV   +K D    ++A AS++AK TRD LM  
Sbjct: 130 LSDPREPSLLDALDGLGDPAAGLPCPAPAVTTRVKADVTCAAVAGASVLAKTTRDALMTA 189

Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            H+++P YG+  + GY    H + +   G    HR ++R
Sbjct: 190 RHEEFPHYGWAGNKGYSAPDHLEALAAHGACPQHRRSWR 228


>gi|238063313|ref|ZP_04608022.1| ribonuclease HII [Micromonospora sp. ATCC 39149]
 gi|237885124|gb|EEP73952.1| ribonuclease HII [Micromonospora sp. ATCC 39149]
          Length = 270

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 71/200 (35%), Positives = 109/200 (54%), Gaps = 4/200 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69
           + LE  ++ +    VAG DE GRGA AGP+V AA +L         G+ DSK ++   RE
Sbjct: 16  YALERALQRRGFRHVAGADEAGRGACAGPLVAAAAVLPEGRRGEIDGLADSKLLTPASRE 75

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            +Y+++ +SA+  ++       +D   +H   L A+  A+ +L   P   L DG  + + 
Sbjct: 76  RVYDQVVASALAYAVVVIPADEVDARGLHVCNLAAMRRALASLTTRPDYVLTDGFGV-DG 134

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L     AV KGD ++  +AAAS++AKVTRDR+M      +P YGF  H GY TA+H   +
Sbjct: 135 LDVPGLAVWKGDRVAACVAAASVLAKVTRDRIMVELDASFPGYGFAEHKGYITAEHTAAL 194

Query: 189 KEKGPSCIHRLTFRPLRNLS 208
           +E GP   HR ++  +  +S
Sbjct: 195 REHGPCLEHRFSYVNVATVS 214


>gi|159036847|ref|YP_001536100.1| ribonuclease HII [Salinispora arenicola CNS-205]
 gi|189043653|sp|A8M684|RNH2_SALAI RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157915682|gb|ABV97109.1| Ribonuclease H [Salinispora arenicola CNS-205]
          Length = 269

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 70/200 (35%), Positives = 108/200 (54%), Gaps = 4/200 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69
           + LE  ++ +    VAG DE GRGA AGP+V AA +L         G+ DSK ++   RE
Sbjct: 16  YALERALQRRGFRHVAGADEAGRGACAGPLVAAAAVLPEGRRGEIDGLADSKLLTPASRE 75

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            +Y ++ + A+  ++       +D   +H   L A+  A+ +L   P   L DG  + + 
Sbjct: 76  RVYAEVVARALAYAVVVIPAAEVDLRGLHVCNLAAMRRALASLATAPEYVLTDGFGV-DG 134

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L     AV KGD ++  +AAAS++AKVTRDR+M      +P YGF  H GY TA+H   +
Sbjct: 135 LDVPGLAVWKGDRVAACVAAASVLAKVTRDRIMVELDTTFPGYGFAEHKGYITAEHSAAL 194

Query: 189 KEKGPSCIHRLTFRPLRNLS 208
           +E+GP   HR ++  +  +S
Sbjct: 195 RERGPCPEHRFSYVNVATVS 214


>gi|123966915|ref|YP_001011996.1| ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9515]
 gi|166226637|sp|A2BYM8|RNH2_PROM5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|123201281|gb|ABM72889.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9515]
          Length = 209

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 77/198 (38%), Positives = 106/198 (53%), Gaps = 5/198 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREE 70
           E  ++  N     GIDEVGRGA+ GPV  AA++L   N       G+ DSKK++ KKR+ 
Sbjct: 11  EDHLQVLNKQLEIGIDEVGRGAVFGPVFSAAVVLTEKNGYTLKQLGVTDSKKLTEKKRKL 70

Query: 71  LYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L  KI S S+  S+  +S + ID+  I  AT  ++  A++ L+  P   +IDG       
Sbjct: 71  LLPKIISLSSDYSLGQSSAREIDQLGIRYATELSMIRAIKKLKSKPYEVIIDGPLSLRLW 130

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                 +I GDS   SIAAASI+AKVTRD LM    KK+  Y    + GY T +H   +K
Sbjct: 131 KSHQRNIIAGDSKFTSIAAASIVAKVTRDFLMERLEKKFSGYFIFKNKGYGTKEHLLSLK 190

Query: 190 EKGPSCIHRLTFRPLRNL 207
             G + +HR +F    NL
Sbjct: 191 ANGVTNLHRKSFLTKLNL 208


>gi|316932574|ref|YP_004107556.1| ribonuclease H [Rhodopseudomonas palustris DX-1]
 gi|315600288|gb|ADU42823.1| Ribonuclease H [Rhodopseudomonas palustris DX-1]
          Length = 299

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 89/195 (45%), Positives = 124/195 (63%), Gaps = 1/195 (0%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P F  E  + ++ +WPVAG DE GRG LAGPVV AA++LDP  IP G++DSK++S +KRE
Sbjct: 77  PSFRRERALIKRGIWPVAGCDEAGRGPLAGPVVAAAVVLDPKRIPKGLDDSKRLSAEKRE 136

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            L+E+I ++A +++  AS + I++ NI +A+L A+  AV  L  +P+   +DGR      
Sbjct: 137 ALFEEICATAQVAVVYASPERINRDNILRASLWALTRAVHALPELPKQVFVDGRD-RLAT 195

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C   AVI GD +  SIAAASIIAKV+RDRLM    ++ P YGF+ H GY    H   + 
Sbjct: 196 RCDCEAVIGGDGLIASIAAASIIAKVSRDRLMCRLAEQCPGYGFEQHKGYGVPDHLDALA 255

Query: 190 EKGPSCIHRLTFRPL 204
             GP+  HR  F P+
Sbjct: 256 RLGPTVHHRRAFAPV 270


>gi|187933770|ref|YP_001885450.1| ribonuclease HII [Clostridium botulinum B str. Eklund 17B]
 gi|187721923|gb|ACD23144.1| ribonuclease HII [Clostridium botulinum B str. Eklund 17B]
          Length = 271

 Score =  200 bits (510), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 80/195 (41%), Positives = 113/195 (57%), Gaps = 8/195 (4%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKK 67
           +E +    E     +AG+DEVGRG LAGP+V  A+ILD       +   +NDSKK++H K
Sbjct: 75  YEFDKSFGE--FKYIAGVDEVGRGPLAGPIVACAVILDLNVIDEELILYLNDSKKLNHTK 132

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           REEL   I   A+   IS +S++ ID+  I  +  +    +  NL V P   L DG  + 
Sbjct: 133 REELSAIIKEKALAYYISLSSNKEIDERGIAFSNNNVFLDSCNNLSVRPDLVLSDGYLV- 191

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           +++      +IKGD+ S SIAAASI+AKV RD LM+    KYP Y F++++GY T KH  
Sbjct: 192 KNIEITNKFIIKGDTKSASIAAASILAKVYRDNLMKEYSIKYPHYDFENNMGYGTPKHID 251

Query: 187 VIKEKGPSCIHRLTF 201
            +K+ G   IHR +F
Sbjct: 252 GLKKYGKCEIHRNSF 266


>gi|331698498|ref|YP_004334737.1| Ribonuclease H [Pseudonocardia dioxanivorans CB1190]
 gi|326953187|gb|AEA26884.1| Ribonuclease H [Pseudonocardia dioxanivorans CB1190]
          Length = 265

 Score =  200 bits (510), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 75/197 (38%), Positives = 111/197 (56%), Gaps = 4/197 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKR 68
           ++ L++ +    + PVAG+DE GRGA AGP+VVAA +L P +     G+ DSK ++   R
Sbjct: 35  NWTLQSTLHRHGLGPVAGVDEAGRGACAGPLVVAACVLRPGDAQRLAGLTDSKLLTAAAR 94

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           EE +E +T  A+ +S+     + ID+  +H A ++ +  AV  L   P   L DG  +  
Sbjct: 95  EEYFELLTRRAVDLSVVVIPPREIDRRGVHAANIEGMRRAVAGLAQRPGYVLTDGFPV-R 153

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
                A AV KGD ++  +AAAS++AKVTRDR+M    ++ P YGF  H GY T  H   
Sbjct: 154 GFGAPALAVPKGDLVAACVAAASVLAKVTRDRIMVELDERLPQYGFAVHKGYCTPVHDAA 213

Query: 188 IKEKGPSCIHRLTFRPL 204
           +   GPS  HR +F  +
Sbjct: 214 LAAHGPSAEHRYSFVNV 230


>gi|228470569|ref|ZP_04055426.1| ribonuclease HII [Porphyromonas uenonis 60-3]
 gi|228307696|gb|EEK16672.1| ribonuclease HII [Porphyromonas uenonis 60-3]
          Length = 204

 Score =  200 bits (510), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 71/181 (39%), Positives = 102/181 (56%), Gaps = 2/181 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85
            G DE GRGALAG +  AA+I         + DSKK++ K+REEL   I   A   ++  
Sbjct: 15  CGCDEAGRGALAGDLYAAAVIWPDTLDHPHLRDSKKLTAKQREELRHFIEEHATAWAVGV 74

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-PEDLPCQAFAVIKGDSISL 144
           A+ Q I + NI  A++ A+  A+E L   P   LIDG    P     +   ++KGD   L
Sbjct: 75  ATVQEIQQINILHASMLAMQRAIEALSCTPERLLIDGNYYDPRPDEVEYHTIVKGDDRYL 134

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AK  RD  M     +YP YG++ + GYPTA+H++ I++ G   +HR  F+ L
Sbjct: 135 AIAAASILAKTHRDEYMTQQALEYPHYGWEQNKGYPTAQHREGIRQHGSCPLHRQGFQLL 194

Query: 205 R 205
           +
Sbjct: 195 Q 195


>gi|160903112|ref|YP_001568693.1| ribonuclease H [Petrotoga mobilis SJ95]
 gi|160360756|gb|ABX32370.1| Ribonuclease H [Petrotoga mobilis SJ95]
          Length = 208

 Score =  200 bits (510), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 75/201 (37%), Positives = 106/201 (52%), Gaps = 10/201 (4%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKRE 69
           +E  +  K    + GIDE GRG LAGPV V A++++       +     DSK +S K+RE
Sbjct: 5   IEITLLNK-YKKIIGIDEAGRGPLAGPVFVGAVVIESKKEGELLAKIGKDSKSLSPKQRE 63

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIP 126
             Y +IT +     + ++ Q ID+ NI KAT  A+   +E +          +IDG+   
Sbjct: 64  RRYFQITRNFKYYSNFSTSQLIDEINIFKATELAMIKLLEKIVEENANDYYVIIDGKFFK 123

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
            D       ++KGD  S  I AASI+AK  RD  M   H+ YP+YGF +H GYPT KH +
Sbjct: 124 LDYNYD--CIVKGDQTSPLIGAASIVAKYERDIYMNQLHELYPNYGFITHKGYPTRKHIE 181

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            IK+ G    HR TF P++  
Sbjct: 182 SIKKYGIISEHRKTFNPIKRF 202


>gi|170760432|ref|YP_001787753.1| ribonuclease HII [Clostridium botulinum A3 str. Loch Maree]
 gi|189043583|sp|B1KWN1|RNH2_CLOBM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|169407421|gb|ACA55832.1| ribonuclease HII [Clostridium botulinum A3 str. Loch Maree]
          Length = 269

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 86/188 (45%), Positives = 120/188 (63%), Gaps = 6/188 (3%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEK 74
           R  N + +AG+DEVGRG LAGP+V AA++LD N       F I DSKK+S KKREEL   
Sbjct: 78  RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREELDII 137

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI  +I+   ++ ID+  I  +  + +  AVE L+V P   L DG ++ ++L  + 
Sbjct: 138 IREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAV-KNLNIRN 196

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGDS S+SIA++SIIAKV RD +M+   K+   YGF+ + GY T +H Q IK+ GP
Sbjct: 197 EFIIKGDSKSISIASSSIIAKVYRDNMMKEYSKELNMYGFNHNAGYGTEEHVQAIKKYGP 256

Query: 194 SCIHRLTF 201
           S IHR++F
Sbjct: 257 SKIHRMSF 264


>gi|258546183|ref|ZP_05706417.1| ribonuclease HII [Cardiobacterium hominis ATCC 15826]
 gi|258518608|gb|EEV87467.1| ribonuclease HII [Cardiobacterium hominis ATCC 15826]
          Length = 190

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 81/183 (44%), Positives = 109/183 (59%), Gaps = 2/183 (1%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           +AG+DE GRGAL G V+ AA+IL  +     + DSKK+S ++RE LY  IT+ A+   ++
Sbjct: 2   IAGVDEAGRGALVGNVIAAAVILPASYELPDLTDSKKLSARQREALYAAITAQAVAWSAA 61

Query: 86  ASHQ-YIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           A+    ID  NIH ATL A+  A+  L   P  ALIDG+  P  L   A A++ GD+   
Sbjct: 62  AATPAEIDTLNIHHATLLAMQRALAALNPPPSQALIDGKFTPT-LAIPARAIVGGDASEA 120

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            IAAASIIAKVTRDR M     +YP YGF +H GY T  H   +   G +  HR ++ P+
Sbjct: 121 CIAAASIIAKVTRDREMLALEARYPGYGFATHKGYGTQAHLAALARLGATPEHRRSYAPV 180

Query: 205 RNL 207
           R +
Sbjct: 181 RAV 183


>gi|255603855|ref|XP_002538125.1| ribonuclease hii, putative [Ricinus communis]
 gi|223513694|gb|EEF24259.1| ribonuclease hii, putative [Ricinus communis]
          Length = 168

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/169 (42%), Positives = 95/169 (56%), Gaps = 6/169 (3%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81
           M  + GIDE GRG LAG V  AA+IL+P     G+ DSKK+S  KR+ L  +I + A+  
Sbjct: 1   MQRLCGIDEAGRGPLAGAVYAAAVILNPERPIAGLADSKKLSEAKRDALAIEIKAHALAW 60

Query: 82  SISSASHQYIDKHNIHKATLDAIYHA----VENLQVIPRSALIDGRSIPEDLPCQAFAVI 137
            I+S S Q ID+ NI +A+L A+  A    VE   +      +DG   P+       A++
Sbjct: 61  GIASVSAQEIDEINILQASLLAMQRAYQAMVEQFGLHATLIQVDGNRCPK-FELPCEAIV 119

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           KGDS    I+AASI+AK  RD  + +   +YP YGF  H GYPTA H  
Sbjct: 120 KGDSKVAEISAASILAKTARDASLLVLDAEYPQYGFAQHKGYPTALHLA 168


>gi|145593863|ref|YP_001158160.1| ribonuclease HII [Salinispora tropica CNB-440]
 gi|189043656|sp|A4X4I2|RNH2_SALTO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|145303200|gb|ABP53782.1| RNase HII [Salinispora tropica CNB-440]
          Length = 270

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 72/200 (36%), Positives = 109/200 (54%), Gaps = 4/200 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69
           + LE  ++ +    VAG DE GRGA AGP+V AA IL P       G+ DSK ++   RE
Sbjct: 16  YALERALQRRGFRQVAGADEAGRGACAGPLVAAAAILPPGRRGEVDGLADSKLLTPASRE 75

Query: 70  ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            +Y ++ + A   ++       +D   +H   L A+  A+ +L   P   L DG  + + 
Sbjct: 76  RVYAEVIARASAYAVVVIPAAEVDLRGLHVCNLAAMRRALASLATPPEYVLTDGFGV-DG 134

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L     AV KGD ++  +AAAS++AKVTRDR+M     ++P YGF  H GY TA+H   +
Sbjct: 135 LDVPGLAVWKGDRVAACVAAASVLAKVTRDRIMVELDLEFPGYGFAEHKGYITAEHSAAL 194

Query: 189 KEKGPSCIHRLTFRPLRNLS 208
           +E+GP   HR ++  +  +S
Sbjct: 195 RERGPCPEHRFSYVNVATVS 214


>gi|163846616|ref|YP_001634660.1| ribonuclease HII [Chloroflexus aurantiacus J-10-fl]
 gi|222524413|ref|YP_002568884.1| ribonuclease HII [Chloroflexus sp. Y-400-fl]
 gi|189043577|sp|A9WIH1|RNH2_CHLAA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|254807970|sp|B9LAL2|RNH2_CHLSY RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|163667905|gb|ABY34271.1| Ribonuclease H [Chloroflexus aurantiacus J-10-fl]
 gi|222448292|gb|ACM52558.1| Ribonuclease H [Chloroflexus sp. Y-400-fl]
          Length = 212

 Score =  199 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 75/212 (35%), Positives = 109/212 (51%), Gaps = 29/212 (13%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAG----------------PVVVAAIILDPNNI 53
           P   +E  ++ +    +AGIDE GRG  AG                P           ++
Sbjct: 3   PDLSIEHDLQRRGYANLAGIDEAGRGCWAGPVVAAAVVLSPAVYRQP-----------DL 51

Query: 54  PFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ 112
             G+NDSK+++   RE +Y  I + A+ + +       ID + I  AT  A+  A+  L 
Sbjct: 52  LAGVNDSKQLTAGARERIYTSIQTHALGVGVGIVPAFLIDAYGILPATRLAMIQALLALP 111

Query: 113 VIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172
               + +ID   +P  +     A+++GD  SLSIAAASIIAKVTRDRLM  A   +P YG
Sbjct: 112 CAVDALIIDAVQLP-GISLPQTALVRGDERSLSIAAASIIAKVTRDRLMATADHCFPHYG 170

Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           F  H GY TA H++ + + GPS +HR TF+P+
Sbjct: 171 FALHKGYGTAVHRRALAQYGPSPLHRRTFQPV 202


>gi|148652730|ref|YP_001279823.1| ribonuclease H [Psychrobacter sp. PRwf-1]
 gi|189043644|sp|A5WDY2|RNH2_PSYWF RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|148571814|gb|ABQ93873.1| Ribonuclease H [Psychrobacter sp. PRwf-1]
          Length = 302

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/253 (29%), Positives = 108/253 (42%), Gaps = 55/253 (21%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP------------NNIPFG 56
           +  F  +   +        G+DEVGRG L G VVVAA IL              +     
Sbjct: 38  KALFSPDNQSQSGGFEFEIGVDEVGRGPLYGSVVVAAAILPKAWSGETEVGLLQDTPLAI 97

Query: 57  INDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP 115
           + DSKK++ +KRE+L+E +   A+   +       ID+ NI +AT+  +  A E L V  
Sbjct: 98  LTDSKKLTERKREKLFEPVKQHALAYLVVEVPAGVIDEINILQATILGMRVACEQLMVEI 157

Query: 116 RSA-------------------LIDGRSIPEDLPCQ-----------------------A 133
                                 LIDG  +P+    +                       A
Sbjct: 158 TKVWRDASELPTAPSTPLGFKLLIDGNKVPDLDEARLATHGICLADMTVTQPAGMVKFCA 217

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            A +KGD+   +IAAAS++AKV RDR +     +YP YG + H GYPT  H + I   G 
Sbjct: 218 EAWVKGDARHNAIAAASVLAKVYRDRQLIADGARYPGYGLEGHKGYPTKAHVEAIARLGV 277

Query: 194 SCIHRLTFRPLRN 206
              HR +F+P++ 
Sbjct: 278 LPEHRRSFKPVQQ 290


>gi|116750425|ref|YP_847112.1| ribonuclease HII [Syntrophobacter fumaroxidans MPOB]
 gi|116750467|ref|YP_847154.1| ribonuclease HII [Syntrophobacter fumaroxidans MPOB]
 gi|189043668|sp|A0LMM5|RNH2_SYNFM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|116699489|gb|ABK18677.1| Ribonuclease H [Syntrophobacter fumaroxidans MPOB]
 gi|116699531|gb|ABK18719.1| RNase HII [Syntrophobacter fumaroxidans MPOB]
          Length = 233

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 80/206 (38%), Positives = 100/206 (48%), Gaps = 24/206 (11%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-----------PFGINDS 60
              E     +    VAGIDEVGRG L               +             G+ DS
Sbjct: 14  LHFEKQAYRQGFQLVAGIDEVGRGPL-----------AGPVVAAAVVVPAGVRLPGVADS 62

Query: 61  KKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           KK+S  +RE   E I S    + I       ID+ NI +AT  A+  AV  L+  P   L
Sbjct: 63  KKLSAGQRESCCEDILSCGCDVGIGRVEPSEIDRVNILQATFQAMIAAVAGLKTPPHCLL 122

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           IDG      L      + +GD+ SLSIAAASI+AKV RDRLM   H KYP YGFD + GY
Sbjct: 123 IDG-PYELPLFIAQKGIPQGDAKSLSIAAASIVAKVHRDRLMCEYHLKYPVYGFDRNKGY 181

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLR 205
            TA+H   ++  GP  IHRL+F  +R
Sbjct: 182 GTARHLDALRRYGPCPIHRLSFGGVR 207


>gi|296273902|ref|YP_003656533.1| ribonuclease H [Arcobacter nitrofigilis DSM 7299]
 gi|296098076|gb|ADG94026.1| Ribonuclease H [Arcobacter nitrofigilis DSM 7299]
          Length = 178

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/178 (38%), Positives = 103/178 (57%), Gaps = 6/178 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           + GIDE GRG LAGP+ VA ++L   N   G+NDSKK+S K+RE+L+++I  ++   I  
Sbjct: 2   LCGIDEAGRGPLAGPLCVAGVVLK--NPIEGLNDSKKLSEKRREKLFDEIILNSYYHIVF 59

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + +D+  +     ++I   ++N  V     L+DG +       +    IK D+    
Sbjct: 60  TSAKTLDELGLSLCLKNSIEEIMQN--VKANEYLMDGNTSFGIEGLKHE--IKADANYEE 115

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           ++AASI+AKV+RDR M    +KYP+Y F+ H GY T  H  +IKE G S  HR +F+ 
Sbjct: 116 VSAASILAKVSRDRYMVEISQKYPNYLFEKHKGYGTKAHIDLIKEFGRSEEHRYSFKT 173


>gi|154245214|ref|YP_001416172.1| ribonuclease HII [Xanthobacter autotrophicus Py2]
 gi|238686707|sp|A7IES2|RNH2_XANP2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|154159299|gb|ABS66515.1| Ribonuclease H [Xanthobacter autotrophicus Py2]
          Length = 249

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 90/196 (45%), Positives = 123/196 (62%), Gaps = 1/196 (0%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
            F  E  +      PVAG DEVGRG LAGPVV AA++LDP  +P G++DSKK++  KRE 
Sbjct: 39  DFTRERALYADGRAPVAGADEVGRGPLAGPVVAAAVVLDPARVPQGLDDSKKLTRAKRES 98

Query: 71  LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           LY +I ++A ++I+ A  + ID+ NI +ATL A+ +AV  L   P   L+DG   P  + 
Sbjct: 99  LYLEICATAEVAIALAPPERIDRDNIRQATLWALANAVRGLPCRPAFLLVDGND-PPRVD 157

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
           C+  A++ GD +  SIAAASI+AKV RDRLM      +P YGF+ H+GY T +H   +K 
Sbjct: 158 CEVEAIVGGDGLVASIAAASIVAKVVRDRLMAGVGAAFPAYGFERHMGYGTREHGAALKA 217

Query: 191 KGPSCIHRLTFRPLRN 206
            GP   HR +F P+R 
Sbjct: 218 HGPCLHHRRSFAPVRE 233


>gi|33862058|ref|NP_893619.1| ribonuclease HII and HIII [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|39932293|sp|Q7UZZ2|RNH2_PROMP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|33634276|emb|CAE19961.1| Ribonuclease HII and HIII [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 209

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 70/180 (38%), Positives = 101/180 (56%), Gaps = 5/180 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS-SAII 81
            GIDEVGRG++ GPV   A++L   +       G+NDSKK++ KKR++ + KI + S+  
Sbjct: 23  IGIDEVGRGSVFGPVFSVAVVLSKKSGLTLKKLGVNDSKKLTPKKRKDFFPKIIALSSDY 82

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           ++  +S + ID   I  AT  ++  AV+ L+ +P   LIDG             +I GDS
Sbjct: 83  ALGQSSVREIDLLGIRHATELSMIRAVKKLKHMPSELLIDGPLTLRLWEGNQRNIISGDS 142

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             +SIA ASIIAKV RD LM     KYP Y    + GY T +H   +K+ G + +HR +F
Sbjct: 143 KFISIATASIIAKVMRDSLMERLESKYPGYFIFKNKGYGTKQHFSSLKKHGLTNLHRKSF 202


>gi|145352696|ref|XP_001420674.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580909|gb|ABO98967.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 189

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 75/189 (39%), Positives = 114/189 (60%), Gaps = 3/189 (1%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74
           E    E     V G+DE GRG LAGPVV AA  +  + +   +NDSK+++ + REE++E+
Sbjct: 2   EKKHWEAGRHRVVGVDEAGRGPLAGPVVAAACFVPKDCVVDCVNDSKQLTEEGREEIFEE 61

Query: 75  ITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           + ++  I   +       ID+ NI + T++A++ +  ++  +    LIDG  +P+ L  +
Sbjct: 62  LMANKDIEYGVCVIDQDRIDEINILECTMEAMHRSAADVPNV-DWVLIDGNRVPKPLEGK 120

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
           A A++KGD+ +++IAAASIIAKVTRDR+M    K++P YGF  H GY T  H   I + G
Sbjct: 121 AEAIVKGDAKNVAIAAASIIAKVTRDRMMLEIDKEFPMYGFKDHKGYGTKAHMAAIDKHG 180

Query: 193 PSCIHRLTF 201
           P   HR TF
Sbjct: 181 PCVYHRKTF 189


>gi|317014714|gb|ADU82150.1| ribonuclease HII [Helicobacter pylori Gambia94/24]
          Length = 201

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 66/191 (34%), Positives = 97/191 (50%), Gaps = 11/191 (5%)

Query: 28  GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAIIS- 82
           GIDE GRG LAG + VA ++ +       +  G+ DSKK+S KKR  L +KI +   +  
Sbjct: 4   GIDEAGRGCLAGSLFVAGVVCNEKTALEFLKMGLKDSKKLSPKKRFFLEDKIKTHDEVGF 63

Query: 83  -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138
            +   S   IDK  +      AI   VEN   +     IDG +   + +  P     +IK
Sbjct: 64  FVVKKSANEIDKLGLGACLKLAIQEIVENGCSLADEIKIDGNTAFGLNKRYPHIQ-TIIK 122

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD     IA AS++AK  +DR M   H  + +YG+D + GY T +H + I + G +  HR
Sbjct: 123 GDEKVAQIAMASVLAKAAKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHR 182

Query: 199 LTFRPLRNLSV 209
            +F  L+N S+
Sbjct: 183 HSF-TLKNRSL 192


>gi|255025707|ref|ZP_05297693.1| ribonuclease HII [Listeria monocytogenes FSL J2-003]
 gi|255028970|ref|ZP_05300921.1| ribonuclease HII [Listeria monocytogenes LO28]
          Length = 233

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 80/171 (46%), Positives = 108/171 (63%), Gaps = 3/171 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E  + ++    +AG+DEVGRG LAGPVV AA+IL  +    GINDSK++S  KR+ L+
Sbjct: 60  QYETDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALF 119

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
           EKI   AI I +    H  ID+ NI++AT  A+  A+  L   P   LID    P     
Sbjct: 120 EKIKKEAIAIGVGIIEHDVIDQVNIYEATKLAMCEALNQLTPEPDFVLIDAM--PLRYTE 177

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
              ++IKGD+ S+SIAAASIIAKVTRDRLM++  +KYP Y F +++GY T 
Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGTK 228


>gi|218245925|ref|YP_002371296.1| Ribonuclease H [Cyanothece sp. PCC 8801]
 gi|257058973|ref|YP_003136861.1| ribonuclease H [Cyanothece sp. PCC 8802]
 gi|218166403|gb|ACK65140.1| Ribonuclease H [Cyanothece sp. PCC 8801]
 gi|256589139|gb|ACV00026.1| Ribonuclease H [Cyanothece sp. PCC 8802]
          Length = 205

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 76/193 (39%), Positives = 102/193 (52%), Gaps = 23/193 (11%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNI-------------PFGINDSKKISHKKREEL 71
            +AG+DEVGRG L G                             G+ DSK++S KKR +L
Sbjct: 13  LIAGVDEVGRGTLFG---------PVVAAVVVIPVSSTTYLQEIGVKDSKQLSAKKRLKL 63

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            ++I   A    IS AS + ID+ NI +A+L A+  AV +L V P   L+DGR    DL 
Sbjct: 64  AQEIKIVAKGYHISYASVKEIDRLNILQASLLAMKRAVLHLSVEPAICLVDGRQKIPDLT 123

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
                +I GD +S  IAAASI+AKV RD L+     KYP Y   ++ GY T KH+  +++
Sbjct: 124 IPQQTIIGGDRLSPIIAAASILAKVWRDELIIRLDAKYPQYDLANNKGYGTLKHRLALEK 183

Query: 191 KGPSCIHRLTFRP 203
            G S  HRL+FRP
Sbjct: 184 YGVSPQHRLSFRP 196


>gi|87125028|ref|ZP_01080875.1| Ribonuclease HII and HIII [Synechococcus sp. RS9917]
 gi|86167348|gb|EAQ68608.1| Ribonuclease HII and HIII [Synechococcus sp. RS9917]
          Length = 205

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 69/184 (37%), Positives = 102/184 (55%), Gaps = 7/184 (3%)

Query: 29  IDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSA-IISI 83
           +DEVGRG   GPV+ AA++L        +  G+ DSK++S ++R +L   I + A   ++
Sbjct: 1   MDEVGRGCWFGPVLAAAVVLSEPAASRLLAQGLTDSKRLSQRRRAQLVPLIEAEACAWAL 60

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             AS Q ID   I  AT  A+  A++ L   P   L+DG             +++GDS  
Sbjct: 61  GQASAQDIDSGGIRAATELAMLRALQRLPRCPDQVLVDGVLPLRLWLGPQETIVRGDSHC 120

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            SIAAAS++AK  RD L++     +P+YG + H GY TA+H+Q +   GP+ +HR TF  
Sbjct: 121 ASIAAASVLAKQARDGLIQRLACHFPEYGLERHAGYGTARHRQALLRHGPTPLHRRTF-- 178

Query: 204 LRNL 207
           LR L
Sbjct: 179 LRKL 182


>gi|168184647|ref|ZP_02619311.1| ribonuclease HII [Clostridium botulinum Bf]
 gi|237795877|ref|YP_002863429.1| ribonuclease HII [Clostridium botulinum Ba4 str. 657]
 gi|182672292|gb|EDT84253.1| ribonuclease HII [Clostridium botulinum Bf]
 gi|229260950|gb|ACQ51983.1| ribonuclease HII [Clostridium botulinum Ba4 str. 657]
          Length = 269

 Score =  198 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 86/188 (45%), Positives = 119/188 (63%), Gaps = 6/188 (3%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEK 74
           R  N + +AG+DEVGRG LAGP+V AA++LD N       F I DSKK+S KKREEL   
Sbjct: 78  RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREELDII 137

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI  +I+   ++ ID+  I  +  + +  AVE L+V P   L DG ++ ++L  + 
Sbjct: 138 IREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAV-KNLNIRN 196

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGDS S+SIA++SIIAKV RD +M+   K    YGF+ + GY T +H Q IK+ GP
Sbjct: 197 EFIIKGDSKSISIASSSIIAKVYRDNMMKEYSKGLNMYGFNHNAGYGTEEHVQAIKKYGP 256

Query: 194 SCIHRLTF 201
           S IHR++F
Sbjct: 257 SKIHRMSF 264


>gi|226949794|ref|YP_002804885.1| ribonuclease HII [Clostridium botulinum A2 str. Kyoto]
 gi|226842944|gb|ACO85610.1| ribonuclease HII [Clostridium botulinum A2 str. Kyoto]
 gi|322806706|emb|CBZ04275.1| ribonuclease HII [Clostridium botulinum H04402 065]
          Length = 269

 Score =  198 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 86/188 (45%), Positives = 119/188 (63%), Gaps = 6/188 (3%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEK 74
           R  N + +AG+DEVGRG LAGP+V AA++LD N       F I DSKK+S KKREEL   
Sbjct: 78  RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREELDII 137

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI  +I+   ++ ID+  I  +  + +  AVE L+V P   L DG ++ ++L  + 
Sbjct: 138 IREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAV-KNLNIRN 196

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGDS S+SIA++SIIAKV RD +M+   K    YGF+ + GY T +H Q IK+ GP
Sbjct: 197 EFIIKGDSKSISIASSSIIAKVYRDNMMKEYSKGLNMYGFNHNAGYGTEEHVQAIKKHGP 256

Query: 194 SCIHRLTF 201
           S IHR++F
Sbjct: 257 SKIHRMSF 264


>gi|308234480|ref|ZP_07665217.1| Ribonuclease H [Atopobium vaginae DSM 15829]
 gi|328944073|ref|ZP_08241538.1| ribonuclease HII [Atopobium vaginae DSM 15829]
 gi|327492042|gb|EGF23816.1| ribonuclease HII [Atopobium vaginae DSM 15829]
          Length = 270

 Score =  198 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 74/181 (40%), Positives = 101/181 (55%), Gaps = 3/181 (1%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-I 80
            +  + G+DEVGRG LAGP+ VAA+IL      +G+NDSKK++  +RE L  +I + A  
Sbjct: 85  GVGTIMGVDEVGRGPLAGPLAVAAVILPQEPHIWGLNDSKKLTSLERERLDTQIRAHARA 144

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
           + I+  S + ID+  I     + +  A+    V P   LIDG   P     +   +IKGD
Sbjct: 145 VGIAFTSPEDIDRFGIVSCLRETMKCAILQTGVEPDCVLIDGN--PIHAHPKEKTLIKGD 202

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S   SIAAASI+AKV RDRLM+     YP Y F  + GY +  H   IK  G S +HR +
Sbjct: 203 SRIASIAAASIVAKVARDRLMQDLDVCYPQYHFAENKGYGSKAHIDAIKTYGLSPVHRKS 262

Query: 201 F 201
           F
Sbjct: 263 F 263


>gi|325963707|ref|YP_004241613.1| ribonuclease HII [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469794|gb|ADX73479.1| ribonuclease HII [Arthrobacter phenanthrenivorans Sphe3]
          Length = 248

 Score =  198 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 74/217 (34%), Positives = 112/217 (51%), Gaps = 22/217 (10%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVA-AII-LDPNNIPFGINDSKKISH 65
           + P    E   + + +  +AG+DEVGRGALAGPV V  A++ L+      G+ DSK ++ 
Sbjct: 6   KAPTLRHERTFKAQGIRYLAGVDEVGRGALAGPVSVGIAVVDLEHQKPLAGVRDSKLLTP 65

Query: 66  KKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALID 121
            +RE L   +   ++ S +  AS Q ID   I  A   A   A +++    + P + L+D
Sbjct: 66  SERERLEPLVRRWSVASAVGHASAQEIDSIGIIAALRLAGTRAWQDILAAGIRPEAVLLD 125

Query: 122 GRSI---PEDLP-------------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165
           G      P   P                   +K D   LS+AAAS+IAKV RDR MR  H
Sbjct: 126 GSHNWLSPAGQPSLFDEPVFEASCDAPVHTKVKADMQCLSVAAASVIAKVERDRTMRELH 185

Query: 166 KKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            ++PD+G+D + GY T  H+ V++  GP+  HR+++R
Sbjct: 186 AEFPDFGWDINKGYATVLHRDVLRAAGPTPYHRVSWR 222


>gi|269215611|ref|ZP_06159465.1| ribonuclease HII [Slackia exigua ATCC 700122]
 gi|269131098|gb|EEZ62173.1| ribonuclease HII [Slackia exigua ATCC 700122]
          Length = 259

 Score =  198 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 69/197 (35%), Positives = 104/197 (52%), Gaps = 8/197 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           R  ++ +  +    +    G+DEVGRG LAGP+ V A++L       GI+DSKK++   R
Sbjct: 56  RSLYDFQRELAHGGVA--VGLDEVGRGPLAGPLAVGAVVLPDEPRIEGIDDSKKLAPSAR 113

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRS 124
           EEL   I ++A+   +       ID+  I      A   AV  +    V   + L+DG  
Sbjct: 114 EELSAVIRATAVAWDVEFIGPHDIDELGISACLKAAFSRAVAAIECAGVRIDAILLDGN- 172

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
            P  +  +   V+KGD+   +I+ ASIIAKV RD  MR     YP YGF+ + GY +A+H
Sbjct: 173 -PLHIDDREVNVVKGDARCAAISCASIIAKVERDAYMRSQAVAYPAYGFEENKGYGSAQH 231

Query: 185 QQVIKEKGPSCIHRLTF 201
            + IK+ G + +HR +F
Sbjct: 232 IEAIKKHGLTPLHRASF 248


>gi|154174298|ref|YP_001409163.1| ribonuclease HII [Campylobacter curvus 525.92]
 gi|189043573|sp|A7H121|RNH2_CAMC5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|112802182|gb|EAT99526.1| ribonuclease HII [Campylobacter curvus 525.92]
          Length = 183

 Score =  198 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 66/176 (37%), Positives = 99/176 (56%), Gaps = 7/176 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           V GIDE GRGALAGP+ VAA +L+      G+NDSKK++ K+R+EL+  IT ++   I  
Sbjct: 3   VCGIDEAGRGALAGPMAVAACVLNAG--ISGLNDSKKLTPKRRKELFHLITQNSRYLIVY 60

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S++ ID+  + +    A+   +  L       L DG    ++       ++K D+    
Sbjct: 61  FSNEQIDELGLSECLRRALN--LFKLYFAGCELLYDGN---QNYGTGVQTMVKADAKVEE 115

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           + AASI+AKV+RD LM    K YP++G+ SH GY T  H + I + G + I R +F
Sbjct: 116 VGAASILAKVSRDELMCAWDKIYPNFGYKSHKGYGTKAHLEAITKYGQNEISRKSF 171


>gi|308276686|gb|ADO26585.1| ribonuclease HII [Corynebacterium pseudotuberculosis I19]
          Length = 204

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 69/174 (39%), Positives = 94/174 (54%), Gaps = 4/174 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREEL 71
            E  + +  + PVAGIDE GRG+  GP+ +AA IL    I     + DSKK+S + REEL
Sbjct: 31  FEGTLEKWGLGPVAGIDEAGRGSCCGPITIAACILPSRPIAALATLTDSKKLSSRMREEL 90

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y  I   A+  SI   S   ID++ I  A +  +  A+  L   P   LID   +P  L 
Sbjct: 91  YPLIKKYAVAWSILHISASEIDRYGIQHANISGMRRAIALLSKQPGYVLIDAMRVP-GLT 149

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           C +  +I GD+ +  IAAAS++AK +RD LM    ++YP YG   H GY T  H
Sbjct: 150 CPSLPIIGGDTAARCIAAASVLAKQSRDELMIDLDREYPGYGLGDHKGYGTKSH 203


>gi|153940580|ref|YP_001391739.1| ribonuclease HII [Clostridium botulinum F str. Langeland]
 gi|170755844|ref|YP_001781984.1| ribonuclease HII [Clostridium botulinum B1 str. Okra]
 gi|189043581|sp|B1II72|RNH2_CLOBK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|189043582|sp|A7GG29|RNH2_CLOBL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|152936476|gb|ABS41974.1| ribonuclease HII [Clostridium botulinum F str. Langeland]
 gi|169121056|gb|ACA44892.1| ribonuclease HII [Clostridium botulinum B1 str. Okra]
 gi|295319764|gb|ADG00142.1| ribonuclease HII [Clostridium botulinum F str. 230613]
          Length = 269

 Score =  198 bits (504), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 86/188 (45%), Positives = 119/188 (63%), Gaps = 6/188 (3%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEK 74
           R  N + +AG+DEVGRG LAGP+V AA++LD N       F I DSKK+S KKREEL   
Sbjct: 78  RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREELDII 137

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI  +I+   ++ ID+  I  +  + +  AVE L+V P   L DG ++ ++L  + 
Sbjct: 138 IREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAV-KNLNIRN 196

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGDS S+SIA++SIIAKV RD +M+   K    YGF+ + GY T +H Q IK+ GP
Sbjct: 197 EFIIKGDSKSISIASSSIIAKVYRDNMMKEYSKGLNMYGFNHNAGYGTEEHVQAIKKYGP 256

Query: 194 SCIHRLTF 201
           S IHR++F
Sbjct: 257 SKIHRMSF 264


>gi|219118288|ref|XP_002179922.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408975|gb|EEC48908.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 189

 Score =  197 bits (503), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 84/191 (43%), Positives = 112/191 (58%), Gaps = 11/191 (5%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS-HKKREELYEKITS--SAI 80
             V G+DE GRG LAGPVV AA ++  +    GI DSK ++    REELYEKI S  +  
Sbjct: 1   QYVIGVDEAGRGPLAGPVVAAAAVVPID--IVGIADSKTLTRESVREELYEKIVSSDNVR 58

Query: 81  ISISSASHQYIDKHNIHKATLDAIY---HAVENLQVIPR---SALIDGRSIPEDLPCQAF 134
            +++      ID+ NI +ATL  +     AV  +  +P     AL+DG  +P+ +  +  
Sbjct: 59  WAVAVIDSARIDEVNILQATLQGMRLAASAVAGISEVPDNAFYALLDGNRLPKKMAMRVE 118

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            ++KGDS   SIAAASI+AKVTRDRLM    K YP+Y    H GYPTA H   +++ G S
Sbjct: 119 TMVKGDSREYSIAAASILAKVTRDRLMHGYDKLYPEYNLAQHKGYPTAAHMDAVRKYGAS 178

Query: 195 CIHRLTFRPLR 205
            IHR TF PL+
Sbjct: 179 PIHRRTFAPLK 189


>gi|219848742|ref|YP_002463175.1| ribonuclease HII [Chloroflexus aggregans DSM 9485]
 gi|254807969|sp|B8GBB1|RNH2_CHLAD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|219543001|gb|ACL24739.1| Ribonuclease H [Chloroflexus aggregans DSM 9485]
          Length = 212

 Score =  197 bits (503), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 72/217 (33%), Positives = 107/217 (49%), Gaps = 33/217 (15%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALA------------------GPVVVAAIILDPN 51
           P   +E  +  +    +AGIDE GRG  A                  G            
Sbjct: 3   PDLSIEQTLLARGYRVLAGIDEAGRGCWAGPVVAAAVVLAPIVYERPG------------ 50

Query: 52  NIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVEN 110
            +   ++DSK+++   RE  Y  +   A  I + +     +D + I  AT  A+  A+ +
Sbjct: 51  -LLDAVDDSKQLTAVARERAYTLVQRYARGIGVGTVPAFLVDAYGILPATRLAMTLALLS 109

Query: 111 LQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170
           L     + LID   +P  +     ++++GD+ SLSIAAASIIAKVTRDRLM+ A + YP 
Sbjct: 110 LPCSVDALLIDAERLP-GIRVPQESLVRGDARSLSIAAASIIAKVTRDRLMQTADRCYPQ 168

Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           YGF  H GY T  H++ +++ GPS  HR TF+P+  L
Sbjct: 169 YGFALHKGYGTPVHRRALRQYGPSPFHRRTFQPVLEL 205


>gi|262202029|ref|YP_003273237.1| ribonuclease H [Gordonia bronchialis DSM 43247]
 gi|262085376|gb|ACY21344.1| Ribonuclease H [Gordonia bronchialis DSM 43247]
          Length = 228

 Score =  197 bits (503), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 80/194 (41%), Positives = 107/194 (55%), Gaps = 4/194 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREEL 71
            E  +    + PVAG+DE GRGA AGP+VVAA +L P  +     ++DSK+++ + RE L
Sbjct: 19  FEFALHRNGLGPVAGVDEAGRGACAGPLVVAACVLKPTQLTSLADLDDSKRLTERTRETL 78

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           Y  +T  A   S        ID+  IH A ++ +  AV  L V P   L DG  +P  L 
Sbjct: 79  YRAVTRYAHSWSAVIIDAAEIDRIGIHVANIEGMRRAVAALDVTPGYVLSDGFKVP-GLT 137

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
             +  VI GD  +  IAAASIIAKVTRDR+M     ++P Y F  H GY TA H   I  
Sbjct: 138 APSLPVIGGDGAAACIAAASIIAKVTRDRIMVAMDDEHPGYDFAVHKGYSTAHHMSRIDT 197

Query: 191 KGPSCIHRLTFRPL 204
            GPS  HR+++R +
Sbjct: 198 AGPSPQHRMSYRNV 211


>gi|148380399|ref|YP_001254940.1| ribonuclease HII [Clostridium botulinum A str. ATCC 3502]
 gi|168180678|ref|ZP_02615342.1| ribonuclease HII [Clostridium botulinum NCTC 2916]
 gi|189043580|sp|A5I4L9|RNH2_CLOBH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|148289883|emb|CAL83991.1| putative ribonuclease HII [Clostridium botulinum A str. ATCC 3502]
 gi|182668376|gb|EDT80355.1| ribonuclease HII [Clostridium botulinum NCTC 2916]
          Length = 269

 Score =  197 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 86/188 (45%), Positives = 119/188 (63%), Gaps = 6/188 (3%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEK 74
           R  N + +AG+DEVGRG LAGP+V AA++LD N       F I DSKK+S KKREEL   
Sbjct: 78  RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREELDII 137

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI  +I+   ++ ID+  I  +  + +  AVE L+V P   L DG ++ ++L  + 
Sbjct: 138 IREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAV-KNLNIRN 196

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGDS S+SIA++SIIAKV RD +M+   K    YGF+ + GY T +H Q IK+ GP
Sbjct: 197 EFIIKGDSKSISIASSSIIAKVYRDSMMKEYSKGLNMYGFNHNAGYGTEEHVQAIKKHGP 256

Query: 194 SCIHRLTF 201
           S IHR++F
Sbjct: 257 SKIHRMSF 264


>gi|269792962|ref|YP_003317866.1| Ribonuclease H [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100597|gb|ACZ19584.1| Ribonuclease H [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 188

 Score =  197 bits (502), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 81/184 (44%), Positives = 111/184 (60%), Gaps = 5/184 (2%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS-S 78
             VAG+DE GRG LAGPVV AA +L  +     +  G+ DSK +S ++RE L+E I S +
Sbjct: 1   MTVAGVDEAGRGPLAGPVVAAAAVLTRDQARELMALGLKDSKALSPRRREALFEAIRSLN 60

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
                 +AS   ID+ ++ KA+L A+  AV  L V P+  L+DG    E L      V+K
Sbjct: 61  VQWRAQAASWGRIDRTHVLKASLWAMGMAVMALPVRPQLVLVDGSVPIEGLRIPQRCVVK 120

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GDS   SI AAS+IAKV RDR+M    + YP Y F SH GYPT +H++++ + GPS +HR
Sbjct: 121 GDSKVPSIMAASVIAKVLRDRVMLALDRLYPQYRFASHKGYPTEEHRRILSQLGPSPVHR 180

Query: 199 LTFR 202
            +F 
Sbjct: 181 RSFS 184


>gi|157414103|ref|YP_001484969.1| ribonuclease HII [Prochlorococcus marinus str. MIT 9215]
 gi|166991069|sp|A8G702|RNH2_PROM2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157388678|gb|ABV51383.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9215]
          Length = 205

 Score =  197 bits (502), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 71/201 (35%), Positives = 109/201 (54%), Gaps = 8/201 (3%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSK 61
           + E+   +L+  + + +     GIDEVGRGA+ GPV  A ++L   N       G+ DSK
Sbjct: 1   MQEKKEEDLQQALNKVSE---VGIDEVGRGAIFGPVFSAVVVLTEKNKFLLKQLGVKDSK 57

Query: 62  KISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K++ KKR+ L  KI   S+   I  +S + ID   I  AT  ++  A++ L+  P   ++
Sbjct: 58  KLTPKKRKFLVPKILLLSSDYGIGQSSVREIDNLGIRVATELSMIRALKKLKEKPSELIV 117

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG  +          ++ GDS  +SIA+ASI+AKV+RD LM    KKY  Y    + GY 
Sbjct: 118 DGPLLLRPWRGTQKNIVSGDSKFISIASASIVAKVSRDNLMMKLEKKYSGYLIFKNKGYG 177

Query: 181 TAKHQQVIKEKGPSCIHRLTF 201
           T +H  +IK+ G + +HR +F
Sbjct: 178 TREHLSLIKKNGVTNLHRKSF 198


>gi|78776481|ref|YP_392796.1| ribonuclease HII [Sulfurimonas denitrificans DSM 1251]
 gi|78497021|gb|ABB43561.1| RNase HII [Sulfurimonas denitrificans DSM 1251]
          Length = 188

 Score =  197 bits (502), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 72/183 (39%), Positives = 101/183 (55%), Gaps = 7/183 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           + GIDE GRG +AG +VVA  IL  N+   G+NDSKK++ KKRE LYE I  ++   I  
Sbjct: 5   LCGIDEAGRGPIAGDLVVAGCIL--NSHVDGLNDSKKLNEKKREALYEIIIKNSSYHIVK 62

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + ID + I      A+   ++NL         +      +LP     +IK D     
Sbjct: 63  FSAKEIDDNGISICMKKALLEIMKNLTCKEYLFDGNTNFGINNLP----TMIKADGKIPE 118

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           ++AASI+AKVT DR +    KKYP Y F  H GY TA H ++IK+ G   IHR +++ L+
Sbjct: 119 VSAASILAKVTHDRNIINDAKKYPQYQFQKHKGYGTALHVEMIKKYGYCEIHRKSYK-LK 177

Query: 206 NLS 208
            L+
Sbjct: 178 ALN 180


>gi|28210941|ref|NP_781885.1| ribonuclease HII [Clostridium tetani E88]
 gi|39932379|sp|Q895L8|RNH2_CLOTE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|28203380|gb|AAO35822.1| ribonuclease HII [Clostridium tetani E88]
          Length = 271

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 78/199 (39%), Positives = 112/199 (56%), Gaps = 9/199 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-----FGINDSKKI 63
           +  ++ +      N   +AG+DEVGRG LAGP+V AA+ILD N        +G+ DSKK+
Sbjct: 71  KKMYDFDKKFA--NNVLIAGVDEVGRGPLAGPIVAAAVILDLNYKNHNDLFYGLKDSKKL 128

Query: 64  SHKKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
             K+RE L   I   A+   I    +  ID   I     + +  +   L+V P   + DG
Sbjct: 129 RAKERENLSHIIKDKALYYNIFELDNHMIDTSGIAWCNNEVLKKSTLGLEVTPGIVISDG 188

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
            SI +++  +   +IKGD+ S SIAAASIIAKV RD+ M    K YP YGF+ + GY T 
Sbjct: 189 FSI-KNINIKNEYIIKGDAKSASIAAASIIAKVYRDKKMEEYSKIYPHYGFEKNSGYGTD 247

Query: 183 KHQQVIKEKGPSCIHRLTF 201
           +H + +K+ GP  IHR++F
Sbjct: 248 EHTKALKKYGPCPIHRMSF 266


>gi|26554469|ref|NP_758403.1| ribonuclease HII [Mycoplasma penetrans HF-2]
 gi|26454479|dbj|BAC44807.1| ribonuclease HII [Mycoplasma penetrans HF-2]
          Length = 218

 Score =  196 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 78/213 (36%), Positives = 115/213 (53%), Gaps = 10/213 (4%)

Query: 1   MFCN-----SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF 55
           MF N     +I +   F+ +  +REK    + G+DEVGRG +AGP+VV  +IL+PN    
Sbjct: 1   MFLNIVVRINIMKNKLFDFDNSLREK-YKNIIGLDEVGRGCIAGPLVVVGVILNPNFFDD 59

Query: 56  GINDSKKI-SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQV 113
            I DSK I S + R+EL   I  ++I   I   +   +D+    +A++  +      L  
Sbjct: 60  RIKDSKLIKSIELRKELKNLILKNSISYQIEVVNSNIVDQLGPKQASVKGMTKIANGLIN 119

Query: 114 IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173
                L D   I +DL      ++KGD+ S +IA ASIIAK TRD  M     KYP+Y F
Sbjct: 120 DYDLCLTDFEKI-KDLEKPQMNLVKGDNTSFTIACASIIAKSTRDDYMEELDNKYPNYLF 178

Query: 174 DSHVGYPTAKHQQVIKEKGP-SCIHRLTFRPLR 205
            +H GY T KH Q+I + GP   +HR +++P++
Sbjct: 179 KNHQGYLTKKHLQLIHQYGPIKEVHRFSYKPIK 211


>gi|251772986|gb|EES53543.1| Ribonuclease HII [Leptospirillum ferrodiazotrophum]
          Length = 195

 Score =  196 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/181 (37%), Positives = 92/181 (50%), Gaps = 9/181 (4%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
            G+DEVGRG LAGPVV A +            GI DSK +S  +R+EL   I + A  +S
Sbjct: 1   MGVDEVGRGPLAGPVVAACVFFSAPVSRLSRLGIADSKSLSSDRRDELSRLIHTEADHVS 60

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPCQAFAVI 137
           +  +S   +++ N+ +AT  A+  A++ L             +DGR     +  Q   V+
Sbjct: 61  LGWSSVDEVNELNVRQATFLAMNRALQQLPPFLMRDSRLCVAVDGRDKIPGVEIQQRTVV 120

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
            GD   LS+AAASI+AKV RD  M      +P YGF  H GY T +H+  I   G S  H
Sbjct: 121 GGDRTVLSVAAASIVAKVARDSYMEKLDALFPGYGFAKHKGYGTEEHRNAILRLGLSPHH 180

Query: 198 R 198
           R
Sbjct: 181 R 181


>gi|46203286|ref|ZP_00051740.2| COG0164: Ribonuclease HII [Magnetospirillum magnetotacticum MS-1]
          Length = 200

 Score =  196 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 75/188 (39%), Positives = 106/188 (56%), Gaps = 5/188 (2%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYE 73
            R      V G DEVGRGAL+GPV+VAA+  DP   P  +    +DSK++    R  L  
Sbjct: 7   ARAATYPAVIGCDEVGRGALSGPVMVAAVWFDPLAFPPELLARLDDSKRLDKATRTALTP 66

Query: 74  KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
            I S A ++++++S + +D+ N+  ATLDA+  AV  L +     L+DGR     L    
Sbjct: 67  LIRSHARVALAASSRRLVDRINVRAATLDAMRRAVTRLGLDAP-VLVDGRDTIPGLTQTC 125

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            AVI GD +   IAAASIIAK  RD +MR    ++P YG++ + GY TA H   +  +G 
Sbjct: 126 RAVIGGDRLVPQIAAASIIAKTLRDDIMRRLAPRHPAYGWERNAGYGTAVHLAGLSAQGC 185

Query: 194 SCIHRLTF 201
           S  HR++F
Sbjct: 186 SPHHRVSF 193


>gi|251780020|ref|ZP_04822940.1| ribonuclease HII [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243084335|gb|EES50225.1| ribonuclease HII [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 271

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 81/195 (41%), Positives = 113/195 (57%), Gaps = 8/195 (4%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKK 67
           +E +    E     VAG+DEVGRG LAGP+V  ++ILD       +   +NDSKK++H K
Sbjct: 75  YEFDKSFGE--FKYVAGVDEVGRGPLAGPIVACSVILDLNVIDEELILYLNDSKKLNHIK 132

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           REEL   I   A+  SIS +S++ ID+  I     +    +  NL + P   L DG  + 
Sbjct: 133 REELAIIIKEKALAYSISLSSNKEIDERGIAYCNNNVFLDSCNNLSIKPELVLSDGYLV- 191

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           +++      VIKGD+ S SIAAASI+AKV RD LM+    KYP Y F++++GY T KH  
Sbjct: 192 KNIDIANKFVIKGDTKSASIAAASILAKVYRDNLMKEYSIKYPHYDFENNMGYGTQKHID 251

Query: 187 VIKEKGPSCIHRLTF 201
            +K+ G   IHR +F
Sbjct: 252 GLKKYGKCEIHRNSF 266


>gi|313886392|ref|ZP_07820115.1| ribonuclease HII [Porphyromonas asaccharolytica PR426713P-I]
 gi|332300172|ref|YP_004442093.1| Ribonuclease H [Porphyromonas asaccharolytica DSM 20707]
 gi|312924168|gb|EFR34954.1| ribonuclease HII [Porphyromonas asaccharolytica PR426713P-I]
 gi|332177235|gb|AEE12925.1| Ribonuclease H [Porphyromonas asaccharolytica DSM 20707]
          Length = 204

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 69/181 (38%), Positives = 103/181 (56%), Gaps = 2/181 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85
            G DE GRGALAG +  AA++         + DSKK++ ++REEL   I   A   ++  
Sbjct: 15  CGCDEAGRGALAGDLYAAAVVWPDTLDHPHLRDSKKLTARQREELRLFIEEHATAWAVGV 74

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-PEDLPCQAFAVIKGDSISL 144
           A+ Q I + NI  A++ A+  A+E L   P   LIDG    P     +   ++KGD   L
Sbjct: 75  ATIQEIQQINILHASMLAMQRAIEALPCTPERLLIDGNYYDPRPDEVEYHTIVKGDDRYL 134

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +IAAASI+AK  RD  M    ++YP YG++ + GYPTA+H++ I++ G   +HR  F+ L
Sbjct: 135 AIAAASILAKTHRDAYMTQQAQEYPHYGWEQNKGYPTAQHREGIRQYGSCPLHRQGFQLL 194

Query: 205 R 205
           +
Sbjct: 195 Q 195


>gi|302865895|ref|YP_003834532.1| ribonuclease H [Micromonospora aurantiaca ATCC 27029]
 gi|302568754|gb|ADL44956.1| Ribonuclease H [Micromonospora aurantiaca ATCC 27029]
          Length = 291

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 68/200 (34%), Positives = 108/200 (54%), Gaps = 4/200 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69
           + LE  ++ +    VAG DE GRGA AGP+V AA IL          + DSK ++   RE
Sbjct: 16  YALERALQRRGFRHVAGADEAGRGACAGPLVAAAAILPEGRRGEIDELADSKLLTPAARE 75

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            +++++ + A+  ++     + +D   +H   L A+  A+ +L   P   L DG  + + 
Sbjct: 76  RVHDEVVARALAYAVVVIPAEEVDARGLHVCNLAAMRRALASLTTRPEYVLTDGFGV-DG 134

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L     AV KGD ++  +AAAS++AKVTRDR+M     ++P YGF  H GY TA+H   +
Sbjct: 135 LDVPGLAVWKGDRVAACVAAASVLAKVTRDRIMVELDGRFPGYGFAEHKGYITAEHSAAL 194

Query: 189 KEKGPSCIHRLTFRPLRNLS 208
           +  GP   HR ++  +  +S
Sbjct: 195 RALGPCREHRFSYVNVAAVS 214


>gi|34558029|ref|NP_907844.1| ribonuclease HII RNase HII [Wolinella succinogenes DSM 1740]
 gi|34483747|emb|CAE10744.1| RIBONUCLEASE HII RNASE HII [Wolinella succinogenes]
          Length = 183

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/185 (36%), Positives = 98/185 (52%), Gaps = 9/185 (4%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
             + GIDE GRG LAG + VA ++L       G+ DSKK+S K R  LY++I  +A   I
Sbjct: 1   MRICGIDEAGRGTLAGSLFVAGVVL--EIEIEGLRDSKKLSKKNRFRLYDEIVQNASFHI 58

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ-AFAVIKGDSI 142
             +S Q +D   +     ++I       QV   S ++DG +       Q    +I+GDS+
Sbjct: 59  VESSAQKVDSLGLGICLRESILEICT--QVSADSYIMDGNT---SFGVQGVETLIRGDSL 113

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              I+AASI+AK ++DR M    + +P+YGF  H GY T  H + I   G S  HR +F+
Sbjct: 114 LPCISAASILAKASKDREMERLDRLHPEYGFAKHCGYGTKAHLEAILHLGYSPFHRQSFK 173

Query: 203 PLRNL 207
            L+ L
Sbjct: 174 -LKRL 177


>gi|188588936|ref|YP_001920597.1| ribonuclease HII [Clostridium botulinum E3 str. Alaska E43]
 gi|188499217|gb|ACD52353.1| ribonuclease HII [Clostridium botulinum E3 str. Alaska E43]
          Length = 271

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 81/195 (41%), Positives = 113/195 (57%), Gaps = 8/195 (4%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKK 67
           +E +    E     VAG+DEVGRG LAGP+V  ++ILD       +   +NDSKK++H K
Sbjct: 75  YEFDKSFGE--FKYVAGVDEVGRGPLAGPIVACSVILDLNVIDEELILYLNDSKKLNHIK 132

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           REEL   I   A+  SIS +S++ ID+  I     +    +  NL + P   L DG  + 
Sbjct: 133 REELAIIIKEKALAYSISLSSNKEIDERGIAYCNNNVFLDSCNNLSIKPELVLSDGYLV- 191

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           +++      VIKGD+ S SIAAASI+AKV RD LM+    KYP Y F++++GY T KH  
Sbjct: 192 KNIDIANKFVIKGDTKSASIAAASILAKVYRDNLMKEYSIKYPHYDFENNMGYGTQKHID 251

Query: 187 VIKEKGPSCIHRLTF 201
            +K+ G   IHR +F
Sbjct: 252 GLKKYGKCEIHRNSF 266


>gi|153934073|ref|YP_001384616.1| ribonuclease HII [Clostridium botulinum A str. ATCC 19397]
 gi|153935357|ref|YP_001388133.1| ribonuclease HII [Clostridium botulinum A str. Hall]
 gi|189043578|sp|A7FW05|RNH2_CLOB1 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|152930117|gb|ABS35617.1| ribonuclease HII [Clostridium botulinum A str. ATCC 19397]
 gi|152931271|gb|ABS36770.1| ribonuclease HII [Clostridium botulinum A str. Hall]
          Length = 269

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 86/188 (45%), Positives = 119/188 (63%), Gaps = 6/188 (3%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEK 74
           R  N + +AG+DEVGRG LAGP+V AA++LD N       F I DSKK+S KKREEL   
Sbjct: 78  RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRVFNIKDSKKLSEKKREELDII 137

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
           I   AI  +I+   ++ ID+  I  +  + +  AVE L+V P   L DG ++ ++L  + 
Sbjct: 138 IREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAV-KNLNIRN 196

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
             +IKGDS S+SIA++SIIAKV RD +M+   K    YGF+ + GY T +H Q IK+ GP
Sbjct: 197 EFIIKGDSKSISIASSSIIAKVYRDSMMKEYSKGLNMYGFNHNAGYGTEEHVQAIKKHGP 256

Query: 194 SCIHRLTF 201
           S IHR++F
Sbjct: 257 SKIHRMSF 264


>gi|281357062|ref|ZP_06243552.1| Ribonuclease H [Victivallis vadensis ATCC BAA-548]
 gi|281316620|gb|EFB00644.1| Ribonuclease H [Victivallis vadensis ATCC BAA-548]
          Length = 223

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 84/198 (42%), Positives = 113/198 (57%), Gaps = 4/198 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E    ++    VAG+DEVGRG LAGPVV AA++        G+ DSK++    RE L
Sbjct: 16  LRPECECWQEGFCFVAGVDEVGRGPLAGPVVAAAVVFPRGVPWPGVYDSKQLKAADRERL 75

Query: 72  YEKITSS--AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
             +I S     I I     + ID+ NI  AT  A+  AV     +    L+DGR + ++L
Sbjct: 76  DREIRSVPGVRIGIGEVPVEEIDRINILNATHRAMREAVLAAGEV-DFILVDGRPV-KNL 133

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           PC + A++KGDS S SIAAASI+AKV RDRLM     ++P YGF  H GY TA H + ++
Sbjct: 134 PCPSRALVKGDSRSASIAAASIVAKVYRDRLMDELDLRWPGYGFKEHKGYGTAAHLESLR 193

Query: 190 EKGPSCIHRLTFRPLRNL 207
             GP   HR +FRP+R +
Sbjct: 194 RLGPCPAHRKSFRPVREI 211


>gi|308183433|ref|YP_003927560.1| ribonuclease HII [Helicobacter pylori PeCan4]
 gi|308065618|gb|ADO07510.1| ribonuclease HII [Helicobacter pylori PeCan4]
          Length = 204

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 64/190 (33%), Positives = 95/190 (50%), Gaps = 11/190 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII 81
           V GIDE GRG LAG + VA ++         +  G+ DSKK+S KKR  L  KI +   +
Sbjct: 2   VLGIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLENKIKTHGEV 61

Query: 82  S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136
              +   S + ID   +      AI   +EN + +     IDG +   + +  P     +
Sbjct: 62  GFFVVKKSAEAIDNLGLGACLKLAIQEILENNRSLANQIKIDGNTAFGLNKRYP-NIQTI 120

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           IKGD     IA AS++AK  +DR M   H  + +YG+D + GY T +H + I + G +  
Sbjct: 121 IKGDEKVAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPF 180

Query: 197 HRLTFRPLRN 206
           HR +F  L+N
Sbjct: 181 HRRSF-TLKN 189


>gi|315502439|ref|YP_004081326.1| ribonuclease h [Micromonospora sp. L5]
 gi|315409058|gb|ADU07175.1| Ribonuclease H [Micromonospora sp. L5]
          Length = 291

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 68/200 (34%), Positives = 108/200 (54%), Gaps = 4/200 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69
           + LE  ++ +    VAG DE GRGA AGP+V AA IL          + DSK ++   RE
Sbjct: 16  YALERALQRRGFRHVAGADEAGRGACAGPLVAAAAILPEGRRGEIDELADSKLLTPAARE 75

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            +++++ + A+  ++     + +D   +H   L A+  A+ +L   P   L DG  + + 
Sbjct: 76  RVHDEVVARALAYAVVVIPAEEVDARGLHVCNLAAMRRALASLTTRPEYVLTDGFGV-DG 134

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           L     AV KGD ++  +AAAS++AKVTRDR+M     ++P YGF  H GY TA+H   +
Sbjct: 135 LDVPGLAVWKGDRVAACVAAASVLAKVTRDRMMVELDGRFPGYGFAEHKGYITAEHSAAL 194

Query: 189 KEKGPSCIHRLTFRPLRNLS 208
           +  GP   HR ++  +  +S
Sbjct: 195 RALGPCREHRFSYVNVAAVS 214


>gi|116328318|ref|YP_798038.1| ribonuclease H [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116331044|ref|YP_800762.1| ribonuclease H [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116121062|gb|ABJ79105.1| Ribonuclease H [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116124733|gb|ABJ76004.1| Ribonuclease H [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 223

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 87/218 (39%), Positives = 110/218 (50%), Gaps = 23/218 (10%)

Query: 6   IPE--RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--------F 55
           +PE    HFE E         P  GIDE GRG  AGP+ VA +    N +          
Sbjct: 1   MPESFFTHFEPEEYRFYSESIP-CGIDEAGRGPYAGPLSVALVSFSQNTLHQILEGKLLK 59

Query: 56  GINDSKKISHKKREELYEKITSSAIISIS-SASHQYIDKHNIHKATLD----AIYHAVEN 110
           G+ DSKK+S KKRE LY +I   A IS     S  YID+  I++A L+        A+  
Sbjct: 60  GLTDSKKLSEKKREALYPEILKIAQISCQTFLSPNYIDREGINRAVLEGIRKCAKMAIRG 119

Query: 111 LQ-VIPRSALIDGRSIPEDLP------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163
           +   +P   LIDG       P       ++    KGD   +SIAAASI+AKV+RDR M  
Sbjct: 120 VSSTLPLQLLIDGNYNFNRYPEWNYFKNRSSFYTKGDLRIVSIAAASILAKVSRDRYMTS 179

Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             KKYPDY FD H GY T  H+++I   G S IHR +F
Sbjct: 180 ISKKYPDYRFDRHKGYGTKLHEELILRYGLSDIHRRSF 217


>gi|258542064|ref|YP_003187497.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-01]
 gi|256633142|dbj|BAH99117.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-01]
 gi|256636199|dbj|BAI02168.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-03]
 gi|256639254|dbj|BAI05216.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-07]
 gi|256642308|dbj|BAI08263.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-22]
 gi|256645363|dbj|BAI11311.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-26]
 gi|256648418|dbj|BAI14359.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-32]
 gi|256651471|dbj|BAI17405.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654462|dbj|BAI20389.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-12]
          Length = 215

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 80/218 (36%), Positives = 107/218 (49%), Gaps = 40/218 (18%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGAL------------------AGPVVVAAIILDP 50
            P F  E  +       VAG+DEVGRG L                        AA+I   
Sbjct: 6   MPDFTREQQLG----GRVAGVDEVGRGPLAGPVVAAAVVFGAGVPADL-----AAVI--- 53

Query: 51  NNIPFGINDSKKISHKKREELYEKITSSA--IISISSASHQYIDKHNIHKATLDAIYHAV 108
                  +DSKK+    RE + E++       I I +AS   IDK NIH A   A+  AV
Sbjct: 54  -------DDSKKLKPAVREAIAERLPQVPGIEIGIGAASTAEIDKLNIHHAAHLAMQRAV 106

Query: 109 ENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
             L  +P   L+DG  +P D  C A A++ GD +SLSIAAASI+AKV RDR M     ++
Sbjct: 107 GRLPRLPDHVLVDGNKLP-DFGCDAQAIVGGDRVSLSIAAASIVAKVVRDRAMARLDARW 165

Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           PDYG++ + GY TA H++ +   G +  HR TF  +R 
Sbjct: 166 PDYGWEKNAGYGTAVHRKALISVGITPHHRKTFGTVRR 203


>gi|182416696|ref|ZP_02948097.1| ribonuclease HII [Clostridium butyricum 5521]
 gi|237668559|ref|ZP_04528543.1| ribonuclease HII (RNase HII) [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182379458|gb|EDT76951.1| ribonuclease HII [Clostridium butyricum 5521]
 gi|237656907|gb|EEP54463.1| ribonuclease HII (RNase HII) [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 273

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 81/190 (42%), Positives = 109/190 (57%), Gaps = 8/190 (4%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSS 78
              +AG+DEVGRG LAGP+V   ++LD     + +   +NDSKK+   KREEL E I   
Sbjct: 83  YKHIAGVDEVGRGPLAGPIVACCVMLDLNVLDDELILYLNDSKKLKESKREELAEIIKEK 142

Query: 79  AII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137
           A+   IS  S+  ID+  I  A       +  +L + P   L DG  + + +  +  +VI
Sbjct: 143 AVCFKISECSNYEIDEIGIGVANNKVFLESCNSLSIKPDLVLSDGYLV-KGIEIENKSVI 201

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGD+ S  IAAASIIAKV RD LM+   KKY  Y F+++ GY TAKH   I+E G   IH
Sbjct: 202 KGDTKSACIAAASIIAKVYRDNLMKEYAKKYSCYDFENNAGYGTAKHMNAIREHGKCEIH 261

Query: 198 RLTFRPLRNL 207
           R +F  L+NL
Sbjct: 262 RNSF--LKNL 269


>gi|208435220|ref|YP_002266886.1| ribonuclease HII [Helicobacter pylori G27]
 gi|238056779|sp|B5Z8X1|RNH2_HELPG RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|208433149|gb|ACI28020.1| ribonuclease HII [Helicobacter pylori G27]
          Length = 204

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 64/190 (33%), Positives = 95/190 (50%), Gaps = 11/190 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG LAG + VA +  D       +  G+ DSKK+S KKR  L +KI +   +
Sbjct: 2   ILGIDEAGRGCLAGSLFVAGVACDDQTALEFLKMGLKDSKKLSPKKRFFLEDKIKTHGEV 61

Query: 82  S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136
              +   S   ID   +      A+   +EN   +     IDG +   + +  P     +
Sbjct: 62  GFFVVKKSANEIDSLGLGACLKLAVQEILENGCSLANEIKIDGNTAFGLNKRYP-NIQTI 120

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           IKGD     IA AS++AK  +DR MR  H  + +YG+D + GY T +H + I + G +  
Sbjct: 121 IKGDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAISKLGATPF 180

Query: 197 HRLTFRPLRN 206
           HR +F  L+N
Sbjct: 181 HRHSF-TLKN 189


>gi|93006331|ref|YP_580768.1| ribonuclease H [Psychrobacter cryohalolentis K5]
 gi|122415238|sp|Q1QAL9|RNH2_PSYCK RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|92394009|gb|ABE75284.1| RNase HII [Psychrobacter cryohalolentis K5]
          Length = 286

 Score =  195 bits (496), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 70/219 (31%), Positives = 99/219 (45%), Gaps = 39/219 (17%)

Query: 27  AGIDEVGRGALAGPVVVAAIILD------------PNNIPFGINDSKKISHKKREELYEK 74
            G+DE GRG L G V VA+ IL              +     + DSK++S KKR+ LY  
Sbjct: 64  IGVDEAGRGPLLGSVNVASAILPRAWSGLIEGQPLKDTPLSILTDSKQLSEKKRDMLYPL 123

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHA---------------VENLQVIPRSA 118
           +   AI   I+      ID+ NI +AT+  +                   +++  +    
Sbjct: 124 VQQHAIGYVIADIPAAVIDQVNILQATMLGMRLCTEVMLEVIAYHLNDMAQDVHQLHAEV 183

Query: 119 LIDGRSIPE-----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
           L DG   PE           +      A IKGD+   SIAAASI+AKV+RD+ M     +
Sbjct: 184 LFDGNRCPELNYARLVELGVEEKVDCQAWIKGDARHTSIAAASILAKVSRDKTMYALDAQ 243

Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           +P+YG   H GYPT  H + I+  G    HR +F P+R 
Sbjct: 244 HPEYGIAKHKGYPTRAHMEAIETYGVLAAHRRSFAPVRK 282


>gi|148259652|ref|YP_001233779.1| ribonuclease H [Acidiphilium cryptum JF-5]
 gi|166225163|sp|A5FW78|RNH2_ACICJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|146401333|gb|ABQ29860.1| RNase HII [Acidiphilium cryptum JF-5]
          Length = 199

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 88/200 (44%), Positives = 112/200 (56%), Gaps = 9/200 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG---INDSKKISH 65
            P F  E  +       VAG+DEVGRG LAGPVV AA IL  +  P     I+DSK++S 
Sbjct: 1   MPDFSRELALG----GVVAGVDEVGRGPLAGPVVAAAAILPADLPPEIAALIDDSKRLSP 56

Query: 66  KKREE-LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
            +RE  L   I S A IS ++AS   I + NI +A+L A+  AV  L V P   L+DG  
Sbjct: 57  AQREAALAALIESGAAISAAAASVAEIARLNILQASLLAMRRAVARLAVRPDHVLVDG-Q 115

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +  DLP     V+ GD +SLSIAAASI AK+ RDR M    ++YP YG+  + GY T  H
Sbjct: 116 VAPDLPMPCTPVVGGDGLSLSIAAASIAAKLVRDRAMSRLDRRYPGYGWARNSGYGTKTH 175

Query: 185 QQVIKEKGPSCIHRLTFRPL 204
           +  I   G +  HR  F PL
Sbjct: 176 RDAILGLGITPHHRRGFGPL 195


>gi|313673941|ref|YP_004052052.1| ribonuclease h [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940697|gb|ADR19889.1| Ribonuclease H [Calditerrivibrio nitroreducens DSM 19672]
          Length = 178

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 66/174 (37%), Positives = 93/174 (53%), Gaps = 2/174 (1%)

Query: 29  IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSAS 87
           +DEVGRG  AGPVV  AI+L        I DSKK++  KR  L E I  + +   I    
Sbjct: 1   MDEVGRGCFAGPVVAVAILLKDGFYDKRIIDSKKLAENKRVVLAELIKENMLDCGIGVVC 60

Query: 88  HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147
              IDK NI +AT  A+  A+  ++V     +ID   +  +L     A IK +   + +A
Sbjct: 61  AGLIDKLNILRATKQAMQVAISRIRVGYDRVVIDAVKL-NNLNTPHEAHIKAEDKFMEVA 119

Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           AASI+AKV RD LM+  H  +P Y +  + GY T  H + I++ G + +HR TF
Sbjct: 120 AASIVAKVYRDNLMKDMHYLFPQYNWYKNKGYGTPDHIEAIRKFGITPLHRKTF 173


>gi|71065472|ref|YP_264199.1| ribonuclease HII [Psychrobacter arcticus 273-4]
 gi|97189215|sp|Q4FT93|RNH2_PSYA2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|71038457|gb|AAZ18765.1| probable ribonuclease HII [Psychrobacter arcticus 273-4]
          Length = 287

 Score =  194 bits (495), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 100/220 (45%), Gaps = 40/220 (18%)

Query: 27  AGIDEVGRGALAGPVVVAAIILD------------PNNIPFGINDSKKISHKKREELYEK 74
            G+DE GRG L G V VA+ IL              +     + DSK++S KKR+ LY  
Sbjct: 64  IGVDEAGRGPLLGSVNVASAILPRAWSGLIEAQLLKDTPLSILTDSKQLSEKKRDLLYPL 123

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHA---------------VENLQVIPRSA 118
           +   AI   I+      ID+ NI +AT+  +                   +++  +  + 
Sbjct: 124 VQQYAIGYIIADIPAAVIDQINILQATMLGMRLCTEILLEVIAHHLNDMAQDIHQLQTAV 183

Query: 119 LIDGRSIPE------------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166
           L DG   PE            +      A +KGD+   SIAAASI+AKV+RD+ M     
Sbjct: 184 LFDGNRCPELNYTSLAQLGIKESMIDCQAWVKGDARHTSIAAASILAKVSRDKTMYALDT 243

Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           ++P+YG   H GYPT  H + I+  G    HR +F P+R 
Sbjct: 244 EHPEYGIAKHKGYPTRAHMEAIETYGVLSAHRRSFAPVRK 283


>gi|294056229|ref|YP_003549887.1| Ribonuclease H [Coraliomargarita akajimensis DSM 45221]
 gi|293615562|gb|ADE55717.1| Ribonuclease H [Coraliomargarita akajimensis DSM 45221]
          Length = 238

 Score =  194 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 75/214 (35%), Positives = 100/214 (46%), Gaps = 34/214 (15%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--------FGINDSKKISHKKRE--- 69
           + +  + GIDE GRG LAGPVV  A +L  +             INDSK++S   RE   
Sbjct: 13  QELDWLIGIDEAGRGCLAGPVVAGACVLADDFFDNVSALERSARINDSKQLSADAREGQY 72

Query: 70  ELYEKITSSAIISISSAS--HQYIDKHNIHKATLDAIYHAVENLQVIPR----------- 116
            L E +    +I  + AS     I + NI  A   A+  AV+ L V              
Sbjct: 73  RLLEDLQGEGLIDFAVASGTVTEIAELNILGANRLAMQRAVDALAVRATGWELPVLGAED 132

Query: 117 ---------SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                      ++DGR +    P     ++KGD  SL+IA ASI AKVTRDRLM    ++
Sbjct: 133 PLFAAQAAVKLIVDGRPLKP-WPYAHEGIVKGDGKSLAIAMASIAAKVTRDRLMLELDQQ 191

Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           YP YGF  H GY T +H+  +  +GP   HR  F
Sbjct: 192 YPQYGFAQHKGYGTKQHRHALAAEGPCPEHRELF 225


>gi|47459459|ref|YP_016321.1| ribonuclease HII [Mycoplasma mobile 163K]
 gi|47458789|gb|AAT28110.1| ribonuclease HII [Mycoplasma mobile 163K]
          Length = 205

 Score =  194 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 64/196 (32%), Positives = 99/196 (50%), Gaps = 2/196 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
           ++ +     +    +   DEVGRG+LAGP+VVA + L PN     + DSKK++ ++REEL
Sbjct: 11  YDFDKRFYNE-FESIIACDEVGRGSLAGPIVVACVNLKPNFFNEKVRDSKKLNPRQREEL 69

Query: 72  YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
              I  +        + + ID  N  +AT  A    +   +      ++           
Sbjct: 70  SILIKENGSFHFCYINSKEIDLLNPLEATKKATTSCLNKFEEKGSQIILLDYLSNFSYSK 129

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA-HKKYPDYGFDSHVGYPTAKHQQVIKE 190
           +   + KGD+ S SIA+ASI+AKV RD  M    + ++  Y F  + GY T  H + IK 
Sbjct: 130 KFINIKKGDNTSFSIASASILAKVERDNFMINLNNDEFDIYDFFKNKGYGTKNHLEAIKI 189

Query: 191 KGPSCIHRLTFRPLRN 206
            GPS IHRL+++PL+ 
Sbjct: 190 FGPSKIHRLSYKPLKK 205


>gi|116671022|ref|YP_831955.1| ribonuclease HII [Arthrobacter sp. FB24]
 gi|189043563|sp|A0JXT5|RNH2_ARTS2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|116611131|gb|ABK03855.1| Ribonuclease H [Arthrobacter sp. FB24]
          Length = 221

 Score =  194 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 72/218 (33%), Positives = 106/218 (48%), Gaps = 22/218 (10%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKI 63
           +   P  + E          +AGIDEVGRGA+AGPV V   ++D +       + DSK +
Sbjct: 1   MSVAPTLDYEHRFLSSGARLLAGIDEVGRGAIAGPVTVGITVVDLSRPVLLDDVRDSKLL 60

Query: 64  SHKKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHA---VENLQVIPRSAL 119
               RE L   + + ++ S +  AS   ID   I  A   A   A   +    V P   L
Sbjct: 61  KESDRERLEPLVRNWSVASAVGHASAGEIDALGIIAALRTAGTRAWLQILAAGVTPDVVL 120

Query: 120 IDGRS----------IPEDLPC------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163
           +DG            + +D P           ++K D   LS+AAASI+AKV RDR+MR 
Sbjct: 121 LDGSHNWLSPETQASLFDDAPAGPGCDAPVHTLVKADMQCLSVAAASILAKVERDRIMRS 180

Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            H +YP +G+D + GY TA H++ ++  GPS  HR+++
Sbjct: 181 LHGEYPAFGWDENKGYGTASHKEALRAAGPSPYHRVSW 218


>gi|329114181|ref|ZP_08242943.1| Ribonuclease HII [Acetobacter pomorum DM001]
 gi|326696257|gb|EGE47936.1| Ribonuclease HII [Acetobacter pomorum DM001]
          Length = 215

 Score =  194 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 80/218 (36%), Positives = 107/218 (49%), Gaps = 40/218 (18%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGAL------------------AGPVVVAAIILDP 50
            P F  E  +       VAG+DEVGRG L                        AA+I   
Sbjct: 6   MPDFTREQQLG----GRVAGVDEVGRGPLAGPVVAAAVVFGAGVPADL-----AAVI--- 53

Query: 51  NNIPFGINDSKKISHKKREELYEKITSSA--IISISSASHQYIDKHNIHKATLDAIYHAV 108
                  +DSKK+    RE + E++       I I +AS   IDK NIH A   A+  AV
Sbjct: 54  -------DDSKKLKPAVREAIAERLPQVPGIEIGIGAASTAEIDKLNIHHAAHLAMQRAV 106

Query: 109 ENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
             L  +P   L+DG  +P D  C A A++ GD +SLSIAAASI+AKV RDR M     ++
Sbjct: 107 GRLPRLPDHVLVDGNKLP-DFGCAAQAIVGGDRVSLSIAAASIVAKVVRDRAMARLDARW 165

Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           PDYG++ + GY TA H++ +   G +  HR TF  +R 
Sbjct: 166 PDYGWEKNAGYGTAVHRKALISVGITPHHRKTFGTVRR 203


>gi|163851219|ref|YP_001639262.1| ribonuclease H [Methylobacterium extorquens PA1]
 gi|163662824|gb|ABY30191.1| Ribonuclease H [Methylobacterium extorquens PA1]
          Length = 216

 Score =  194 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 74/183 (40%), Positives = 103/183 (56%), Gaps = 5/183 (2%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKKREELYEKITSS 78
              V G DEVGRGAL GPV+VAA+  DP   P      ++DSK++    RE L   I + 
Sbjct: 22  YPAVIGCDEVGRGALCGPVMVAAVWFDPVAFPPEILARLDDSKRLDRAAREALTPLIRAH 81

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           A +S+++ S   +D+ N+  ATLDA+  AV  L +   + L+DGR     L     AVI 
Sbjct: 82  ARVSLAAGSRALVDRVNVRGATLDAMRRAVLGLGLDA-TVLVDGRDPIPGLTQGCRAVIG 140

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD +   IAAASI+AK  RD +MR    ++P Y ++ + GY TA H   +  +G S  HR
Sbjct: 141 GDRLVPQIAAASIVAKTFRDEIMRRLAPRHPAYAWERNAGYGTAAHLAGLTAQGRSPHHR 200

Query: 199 LTF 201
           L+F
Sbjct: 201 LSF 203


>gi|317182569|dbj|BAJ60353.1| ribonuclease HII [Helicobacter pylori F57]
          Length = 204

 Score =  194 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 65/187 (34%), Positives = 93/187 (49%), Gaps = 9/187 (4%)

Query: 28  GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII-- 81
           GIDE GRG LAG + VA ++         +  G+ DSKK+S KKR  L +KI +   I  
Sbjct: 4   GIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEIKF 63

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139
            +   S   ID   +      AI   +ENL   P +  IDG +             +IKG
Sbjct: 64  WVVKKSANEIDNLGLGACLKLAIQEILENLSASPHAIKIDGNTAFGLNKRYSNIETIIKG 123

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D     IA AS++AK  +DR MR  H  + +YG+D + GY T +H + + + G +  HR 
Sbjct: 124 DEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPFHRH 183

Query: 200 TFRPLRN 206
           +F  L+N
Sbjct: 184 SF-TLKN 189


>gi|240138372|ref|YP_002962844.1| RNAse HII [Methylobacterium extorquens AM1]
 gi|240008341|gb|ACS39567.1| RNAse HII [Methylobacterium extorquens AM1]
          Length = 216

 Score =  194 bits (494), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 74/183 (40%), Positives = 103/183 (56%), Gaps = 5/183 (2%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKKREELYEKITSS 78
              V G DEVGRGAL GPV+VAA+  DP   P      ++DSK++    RE L   I + 
Sbjct: 22  YPAVIGCDEVGRGALCGPVMVAAVWFDPVAFPPEILARLDDSKRLDRAAREALTPLIRAH 81

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           A +S+++ S   +D+ N+  ATLDA+  AV  L +   + L+DGR     L     AVI 
Sbjct: 82  ARVSLAAGSRALVDRVNVRGATLDAMRRAVLGLGLDA-TVLVDGRDPIPGLTQGCRAVIG 140

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD +   IAAASI+AK  RD +MR    ++P Y ++ + GY TA H   +  +G S  HR
Sbjct: 141 GDRLVPQIAAASIVAKTFRDEIMRRLAPRHPAYAWERNAGYGTAAHLAGLTAQGRSPHHR 200

Query: 199 LTF 201
           L+F
Sbjct: 201 LSF 203


>gi|188580997|ref|YP_001924442.1| ribonuclease H [Methylobacterium populi BJ001]
 gi|179344495|gb|ACB79907.1| Ribonuclease H [Methylobacterium populi BJ001]
          Length = 232

 Score =  194 bits (494), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 74/188 (39%), Positives = 104/188 (55%), Gaps = 5/188 (2%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKKREELYE 73
            R      V G DEVGRGAL GPV+VAA+  DP   P      ++DSK++    RE L  
Sbjct: 27  ARAATYPAVIGCDEVGRGALCGPVMVAAVWFDPLAFPAEILARLDDSKRLDRATREALTP 86

Query: 74  KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133
            I + A +S+++ S   +D+ N+  ATLDA+  AV  L +   + L+DGR     L    
Sbjct: 87  LIRAHARVSLAAGSRALVDRVNVRGATLDAMRRAVAGLGLDA-AVLVDGRDGIPGLVQPC 145

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193
            AV+ GD +   IAAASI+AK  RD LMR    ++P Y ++ + GY TA H   +  +G 
Sbjct: 146 RAVVGGDRLVPQIAAASIVAKTCRDDLMRRLALRHPAYAWERNAGYGTAAHLAGLTAQGR 205

Query: 194 SCIHRLTF 201
           S  HR++F
Sbjct: 206 SPHHRVSF 213


>gi|254560918|ref|YP_003068013.1| RNAse HII [Methylobacterium extorquens DM4]
 gi|254268196|emb|CAX24115.1| RNAse HII [Methylobacterium extorquens DM4]
          Length = 216

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 74/183 (40%), Positives = 103/183 (56%), Gaps = 5/183 (2%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKKREELYEKITSS 78
              V G DEVGRGAL GPV+VAA+  DP   P      ++DSK++    RE L   I + 
Sbjct: 22  YPAVIGCDEVGRGALCGPVMVAAVWFDPVAFPPEILARLDDSKRLDRAAREALTPLIRAH 81

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           A +S+++ S   +D+ N+  ATLDA+  AV  L +   + L+DGR     L     AVI 
Sbjct: 82  ARVSLAAGSRALVDRVNVRGATLDAMRRAVLGLGLDA-TVLVDGRDPIPGLTQGCRAVIG 140

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD +   IAAASI+AK  RD +MR    ++P Y ++ + GY TA H   +  +G S  HR
Sbjct: 141 GDRLVPQIAAASIVAKTFRDEIMRRLAPRHPAYAWERNAGYGTAAHLAGLTAQGRSPHHR 200

Query: 199 LTF 201
           L+F
Sbjct: 201 LSF 203


>gi|170750072|ref|YP_001756332.1| ribonuclease H [Methylobacterium radiotolerans JCM 2831]
 gi|170656594|gb|ACB25649.1| Ribonuclease H [Methylobacterium radiotolerans JCM 2831]
          Length = 232

 Score =  194 bits (493), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 81/179 (45%), Positives = 110/179 (61%), Gaps = 7/179 (3%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAIIS 82
            G DEVGRGAL GPVVVAA+  DP  IP      ++DSK++    RE L   I + A ++
Sbjct: 52  IGCDEVGRGALCGPVVVAAVWFDPTAIPPDLLAALDDSKRVPEPVRERLAPLIRAHARVA 111

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142
           +++ S   ID+ NI  ATLDA+  AV  L +     L+DGR     LP +  AVI GD +
Sbjct: 112 VAAGSRALIDRINIRGATLDAMARAVARLGLAAP-VLVDGRDALPGLPGR--AVIGGDHL 168

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
              IAAASI+AKV RD+LMR   +++P YG++ +VGY TA H+  + + G S  HRL+F
Sbjct: 169 VPQIAAASIVAKVLRDQLMRRLARRHPGYGWERNVGYGTAVHRAGLTQLGRSAHHRLSF 227


>gi|158522314|ref|YP_001530184.1| ribonuclease H [Desulfococcus oleovorans Hxd3]
 gi|158511140|gb|ABW68107.1| Ribonuclease H [Desulfococcus oleovorans Hxd3]
          Length = 195

 Score =  194 bits (493), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 88/194 (45%), Positives = 115/194 (59%), Gaps = 5/194 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E   R      +AG+DE GRG LAGPVV AA++   +     I DSKK+S KKR  LY+
Sbjct: 4   YEDSARSDGFSIIAGLDEAGRGPLAGPVVAAAVVFPDDYTNDRITDSKKLSAKKRASLYD 63

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLPC 131
            I   A+ + I       ID+ NI +A+L A+  AVENL   P   LIDG  +IP   P 
Sbjct: 64  DIYRDALTVGIGIVDAVEIDRINILQASLLAMAMAVENLFPQPDFLLIDGTFTIPR--PV 121

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
               ++KGDS S+SIAAASI+AKV+RD +M   H  YP++GF  H GYPT  H+  I + 
Sbjct: 122 GQRPIVKGDSASISIAAASIVAKVSRDNMMERYHLDYPEFGFSQHKGYPTKAHRNAIFQY 181

Query: 192 GPSCIHRLTFRPLR 205
           GP+ IHR +F  +R
Sbjct: 182 GPTLIHRASF-TVR 194


>gi|297202855|ref|ZP_06920252.1| ribonuclease HII [Streptomyces sviceus ATCC 29083]
 gi|197717340|gb|EDY61374.1| ribonuclease HII [Streptomyces sviceus ATCC 29083]
          Length = 233

 Score =  194 bits (493), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 74/202 (36%), Positives = 113/202 (55%), Gaps = 2/202 (0%)

Query: 8   ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           E P   +E  +R       +AG+DEVGRGA AGPV V A +      P G+ DSK +S K
Sbjct: 4   EPPTHTVERSLRATTGAKIIAGVDEVGRGAWAGPVTVCAAVTGLRRPPQGLTDSKLLSVK 63

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R EL E++ +     ++  AS + ID   +  A   A   A+E L V P + ++DG+  
Sbjct: 64  RRTELAEELRTWVTSYALGHASPEEIDHMGMTAALRIAAVRALEALPVRPDAVILDGKHD 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
               P +   VIKGD   +++AAAS+IAKV RD++M      + D+GF ++ GYP+  H+
Sbjct: 124 YLGTPWKVRTVIKGDQSCVAVAAASVIAKVQRDKMMAELGIDHADFGFAANAGYPSPVHK 183

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
             ++ +GP+  HRL++  L  L
Sbjct: 184 AALEVRGPTPYHRLSWAYLDAL 205


>gi|217032077|ref|ZP_03437577.1| hypothetical protein HPB128_16g37 [Helicobacter pylori B128]
 gi|298735652|ref|YP_003728177.1| ribonuclease HII [Helicobacter pylori B8]
 gi|216946225|gb|EEC24833.1| hypothetical protein HPB128_16g37 [Helicobacter pylori B128]
 gi|298354841|emb|CBI65713.1| ribonuclease HII [Helicobacter pylori B8]
          Length = 204

 Score =  194 bits (493), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 65/190 (34%), Positives = 96/190 (50%), Gaps = 11/190 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII 81
           V GIDE GRG LAG + VA +  D       +  G+ DSKK+S KKR  L +KI +   +
Sbjct: 2   VLGIDEAGRGCLAGSLFVAGVACDEKTALEFLKMGLKDSKKLSPKKRFFLEDKIKTHGEV 61

Query: 82  S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136
              +   S   ID   +      +I   +EN   +     IDG +   + +  P     +
Sbjct: 62  GFFVVKKSANEIDSLGLGACLRLSIEEILENGCSLANEIKIDGNTAFGLNKRYPHIQ-TI 120

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           IKGD     IA AS++AK ++DR MR  H  + +YG+D + GY T +H + I + G +  
Sbjct: 121 IKGDEKIAQIAMASVLAKASKDREMRQLHALFKEYGWDKNCGYGTKQHIEAIIKLGATPF 180

Query: 197 HRLTFRPLRN 206
           HR +F  L+N
Sbjct: 181 HRRSF-TLKN 189


>gi|296270667|ref|YP_003653299.1| ribonuclease H [Thermobispora bispora DSM 43833]
 gi|296093454|gb|ADG89406.1| Ribonuclease H [Thermobispora bispora DSM 43833]
          Length = 253

 Score =  193 bits (492), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 10/206 (4%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG---------INDSKK 62
           + +E  +R      +AG+DEVGRGA AGPVVV   + D +  P           + DSK 
Sbjct: 28  YAIEEELRAAGAVRIAGLDEVGRGAWAGPVVVCVAVTDLSPPPELPGRGGRSVRLTDSKL 87

Query: 63  ISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           ++   RE   E +        I  +S Q ID+  + +A   A   A+  L   P + ++D
Sbjct: 88  LTRASREAFAEVLPGWLNCHGIGESSPQEIDELGMTEALRLAAERALAALPYRPDAIILD 147

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           G+      P  A   ++ D  S+S+AAAS++AKV RDRLM    +++P+YGF  + GYP+
Sbjct: 148 GKHDFLRGPWTARCEVQADRRSVSVAAASVLAKVYRDRLMAALGEEHPEYGFADNAGYPS 207

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207
             H++ + E GP+  HRL++  L  L
Sbjct: 208 PVHRRALAEHGPTPHHRLSWSYLDAL 233


>gi|261840038|gb|ACX99803.1| ribonuclease HII [Helicobacter pylori 52]
          Length = 204

 Score =  193 bits (492), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 11/190 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG LAG + VA ++         +  G+ DSKK+S KKR  L +KI +   +
Sbjct: 2   ILGIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEV 61

Query: 82  --SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136
              +   S   ID+  +      AI   +EN + +     IDG +   + +  P     +
Sbjct: 62  EFWVVKKSANEIDRLGLGACLKLAIQEILENNRSLANGIKIDGNTAFGLNKRYP-NIQTI 120

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           IKGD     IA AS++AK  +DR MR  H  + +YG+D + GY T +H + + + G +  
Sbjct: 121 IKGDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPF 180

Query: 197 HRLTFRPLRN 206
           HR +F  L+N
Sbjct: 181 HRHSF-TLKN 189


>gi|319760422|ref|YP_004124360.1| ribonuclease HII [Candidatus Blochmannia vafer str. BVAF]
 gi|318039136|gb|ADV33686.1| ribonuclease HII [Candidatus Blochmannia vafer str. BVAF]
          Length = 208

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 81/189 (42%), Positives = 109/189 (57%), Gaps = 6/189 (3%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNI-----PFGINDSKKISHKKREELYEKITSSA 79
            +AG+DEVG GAL GP++ +A+I  P N        G+ DSK ++ KKR +LY+ I   +
Sbjct: 16  LIAGVDEVGCGALMGPIIASAVIFPPFNNQKKINVAGLVDSKTLNSKKRVKLYKDIQKYS 75

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           +  SI   S   IDK N+ KA L A+  AV NL +IP   L+DG   P          IK
Sbjct: 76  LSWSIGVVSVSEIDKLNVLKARLLAMKRAVLNLSIIPDLILVDGNKAPFFKNIFYQCFIK 135

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD     I+AASIIAKV RDR M I + +YP YG + + GYPT  H Q +   GP+  HR
Sbjct: 136 GDVYIPIISAASIIAKVIRDRAMIILNTQYPQYGLNHNKGYPTNFHIQQLYFYGPTIYHR 195

Query: 199 LTFRPLRNL 207
            TF P++++
Sbjct: 196 KTFSPVKHM 204


>gi|15612308|ref|NP_223961.1| ribonuclease HII [Helicobacter pylori J99]
 gi|7227933|sp|Q9ZJR1|RNH2_HELPJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|4155855|gb|AAD06828.1| RIBONUCLEASE HII [Helicobacter pylori J99]
          Length = 209

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 64/188 (34%), Positives = 95/188 (50%), Gaps = 11/188 (5%)

Query: 28  GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAIIS- 82
           GIDE GRG LAG + VA ++ +       +  G+ DSKK+S KKR  L +KI +   +  
Sbjct: 9   GIDEAGRGCLAGSLFVAGVVCNEKIALEFLKMGLKDSKKLSPKKRFFLEDKIKTHGEVGF 68

Query: 83  -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138
            +   S   ID   +      AI   VEN   +     IDG +   + +  P     +IK
Sbjct: 69  FVVKKSANEIDHLGLGACLKLAIEEIVENGCSLANEIKIDGNTAFGLNKRYP-NIQTIIK 127

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD     IA AS++AK ++DR M   H  + +YG+D + GY T +H + I + G +  HR
Sbjct: 128 GDETIAQIAMASVLAKASKDREMLELHALFKEYGWDKNCGYGTKQHIEAINKLGATPFHR 187

Query: 199 LTFRPLRN 206
            +F  L+N
Sbjct: 188 HSF-TLKN 194


>gi|317013110|gb|ADU83718.1| ribonuclease HII [Helicobacter pylori Lithuania75]
          Length = 204

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 9/187 (4%)

Query: 28  GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS--AII 81
           GIDE GRG LAG + VA ++ +       +  G+ DSKK+S KKR  L +KI +      
Sbjct: 4   GIDEAGRGCLAGSLFVAGVVCNDQTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEVKF 63

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139
            +   S   ID   +      A+   +EN   +     IDG +             +IKG
Sbjct: 64  FVVKKSTNEIDNLGLGACLKLAMQEILENGCSLANEIKIDGNTAFGLNKRYSNIQTIIKG 123

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D     IA AS++AK  +DR M   H  + +YG+D + GY T +H + I + G +  HR 
Sbjct: 124 DEKIAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHRH 183

Query: 200 TFRPLRN 206
           +F  L+N
Sbjct: 184 SF-TLKN 189


>gi|293363996|ref|ZP_06610732.1| ribonuclease HII [Mycoplasma alligatoris A21JP2]
 gi|292552486|gb|EFF41260.1| ribonuclease HII [Mycoplasma alligatoris A21JP2]
          Length = 199

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 64/195 (32%), Positives = 111/195 (56%), Gaps = 5/195 (2%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E+++ +K    + G+DEVGR +LAGP+VVA ++   N     I DSK+++  +R+  Y+
Sbjct: 4   YESVLLQK-YEKILGLDEVGRDSLAGPIVVACVMFPKNYHNPLIKDSKELTKDQRDIAYK 62

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQV-IPRSALIDGRSIPEDLPC 131
           +I   AI          ++D HN  K+++  +   +++ ++      + D   +      
Sbjct: 63  EIIKDAITYKYIFLDKDFVDLHNPKKSSIIGMEKLIDSYELDQIDYVITDYEKVNTKF-- 120

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           Q+ A+  GD  S++IAAASI+AKV RD  M     +YP Y FD + GY T  H + +K+ 
Sbjct: 121 QSRAIKFGDKYSITIAAASIVAKVIRDEYMDKMSLEYPIYAFDKNKGYGTKVHLEALKKY 180

Query: 192 GPSCIHRLTFRPLRN 206
           GPS IHR++++P+++
Sbjct: 181 GPSPIHRISYKPVKD 195


>gi|218437055|ref|YP_002375384.1| ribonuclease H [Cyanothece sp. PCC 7424]
 gi|218169783|gb|ACK68516.1| Ribonuclease H [Cyanothece sp. PCC 7424]
          Length = 212

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 78/210 (37%), Positives = 112/210 (53%), Gaps = 26/210 (12%)

Query: 10  PHFELEAMVREKN-MWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-------------- 54
           P F++  +   K     +AG+DEVGRGAL            P                  
Sbjct: 7   PSFDVFLLPEVKGQETLIAGVDEVGRGAL----------FGPVVAGAVVVPVSAIDQLTQ 56

Query: 55  FGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQV 113
            G+ DSK++S K+R EL ++I   AI   +S A+   ID+ NI +A+L A+Y AV  L++
Sbjct: 57  LGVKDSKQLSPKRRVELAQQIKGLAIDSHVSFATVGEIDQINILQASLKAMYRAVVKLKI 116

Query: 114 IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173
            P   L+DGR    +L  +   +IKGD  S  IAAASI+AKV RD L+    +KYP Y  
Sbjct: 117 NPAVCLVDGRHPLPNLEIRQENIIKGDERSPVIAAASILAKVWRDNLIVRLAQKYPQYDL 176

Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            ++ GY T +H++ + + G S  HRL+FRP
Sbjct: 177 IANKGYGTLRHREALLKYGASPQHRLSFRP 206


>gi|308185075|ref|YP_003929208.1| ribonuclease HII [Helicobacter pylori SJM180]
 gi|308060995|gb|ADO02891.1| ribonuclease HII [Helicobacter pylori SJM180]
          Length = 204

 Score =  192 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 63/190 (33%), Positives = 95/190 (50%), Gaps = 11/190 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG LAG + VA ++         +  G+ DSKK+S KKR  L +KI +   +
Sbjct: 2   ILGIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEV 61

Query: 82  S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136
              +   S + ID   +      AI   +EN   +     IDG +   + +  P     +
Sbjct: 62  GFFVVKKSAEAIDSLGLGACLKLAIQEILENGCSLANEIKIDGNTAFGLDKRYP-NIQTI 120

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           IKGD     IA AS++AK  +DR M   H  + +YG+D + GY T +H + I + G +  
Sbjct: 121 IKGDETIAQIAMASVLAKTAKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPF 180

Query: 197 HRLTFRPLRN 206
           HR +F  L+N
Sbjct: 181 HRHSF-TLKN 189


>gi|242309717|ref|ZP_04808872.1| ribonuclease [Helicobacter pullorum MIT 98-5489]
 gi|239523718|gb|EEQ63584.1| ribonuclease [Helicobacter pullorum MIT 98-5489]
          Length = 204

 Score =  192 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 96/206 (46%), Gaps = 18/206 (8%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI---PFGI 57
           M  N++ E P +         N   + GIDE GRG + G + V  +IL P         +
Sbjct: 1   MKQNNLLELPLY---------NPLEICGIDEAGRGCIGGSLFVCGVILTPTFPKILLEQL 51

Query: 58  NDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117
            DSKK+S K R+ L  +I   A   +   S + ID   +     +++   + NLQ     
Sbjct: 52  QDSKKLSQKTRDNLAPQIQKYAKFHLVKKSAEEIDTKGLSLCIKESLQEILTNLQAP--H 109

Query: 118 ALIDGRSIPEDLPCQA-FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
            L DG     +    +   +IKGDS   SI+AASI+AK  +D+        YP YGF SH
Sbjct: 110 YLFDGNC---NFGIHSLQTLIKGDSKIPSISAASILAKNAKDKESAKLDNLYPQYGFKSH 166

Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFR 202
            GY T +H + I + G    HR +++
Sbjct: 167 KGYGTKEHLKAILDFGYCKEHRKSYK 192


>gi|45657433|ref|YP_001519.1| ribonuclease HII [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|45600672|gb|AAS70156.1| ribonuclease HII [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 231

 Score =  192 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/210 (41%), Positives = 108/210 (51%), Gaps = 21/210 (10%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--------NIPFGINDSKKI 63
           FELE         P  GIDE GRG  AGP+ VA +    N         I  G+ DSKK+
Sbjct: 10  FELEEHRFYSESIP-CGIDEAGRGPYAGPLSVALVSFSQNSLTQILEGKILKGLTDSKKL 68

Query: 64  SHKKREELYEKITSSAIISIS-SASHQYIDKHNIHKATLDAIYHAVENLQ-----VIPRS 117
           S KKRE LY +I  +A  S     S  YID+  I++A L+ I    + +        P  
Sbjct: 69  SEKKRESLYPEIIKAAQFSYQTFISPNYIDRKGINRAVLEGILKCTKLINRFTQSKFPLK 128

Query: 118 ALIDGR----SIPE--DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171
            LIDG       PE  +L   +   IKGD   +SIAAASI+AKV+RDR M    KKYP Y
Sbjct: 129 LLIDGNYNFNRYPEWMNLKGCSTFYIKGDLRIVSIAAASILAKVSRDRYMISVSKKYPIY 188

Query: 172 GFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            FD H GY T  H+++I   G S IHR +F
Sbjct: 189 RFDQHKGYGTKLHEELILLHGLSDIHRRSF 218


>gi|297624822|ref|YP_003706256.1| Ribonuclease H [Truepera radiovictrix DSM 17093]
 gi|297166002|gb|ADI15713.1| Ribonuclease H [Truepera radiovictrix DSM 17093]
          Length = 211

 Score =  192 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 65/216 (30%), Positives = 100/216 (46%), Gaps = 29/216 (13%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-------- 56
           +IP  P + LE  + ++    +AG+DE GRG                             
Sbjct: 2   TIPTPPDWRLEHTLWQRGYGVLAGVDEAGRG-------------ALAGPVVAAAVVLPRG 48

Query: 57  ---INDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL- 111
                DSK +S   RE L E++   A+  ++  AS   +D+ N+ +AT  A   A+  L 
Sbjct: 49  DHPFRDSKTLSPAARETLAEEVRRRALAWAVGCASASEVDRLNVLQATHLAAQRALCALA 108

Query: 112 -QVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170
            +V     + D   +P   P    AV K D+ S+ +AAAS++AK  RD LMR   ++YP 
Sbjct: 109 GRVAVDGLVTDFLKLP--FPGPVLAVPKADATSVQVAAASLLAKTVRDALMRRLGERYPA 166

Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           YGF  H GY ++ H + +   GP   HR +F P++ 
Sbjct: 167 YGFARHKGYGSSTHLRALAAHGPCPEHRRSFGPVQR 202


>gi|294828096|ref|NP_712567.2| ribonuclease H II [Leptospira interrogans serovar Lai str. 56601]
 gi|293385944|gb|AAN49585.2| ribonuclease H II [Leptospira interrogans serovar Lai str. 56601]
          Length = 231

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 86/210 (40%), Positives = 108/210 (51%), Gaps = 21/210 (10%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--------NIPFGINDSKKI 63
           FELE         P  GIDE GRG  AGP+ VA +    N         I  G+ DSKK+
Sbjct: 10  FELEEHRFYSESIP-CGIDEAGRGPYAGPLSVALVSFSQNSLTQILEGKILKGLTDSKKL 68

Query: 64  SHKKREELYEKITSSAIISIS-SASHQYIDKHNIHKATLDAIYHAVENLQ-----VIPRS 117
           S KKRE LY +I  +A  S     S  YID+  I++A L+ I    + +        P  
Sbjct: 69  SEKKRESLYPEIIKAAQFSYQTFISPNYIDRKGINRAVLEGILKCTKLINRFTQSKFPLK 128

Query: 118 ALIDGR----SIPEDLPCQ--AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171
            LIDG       PE +  +  +   IKGD   +SIAAASI+AKV+RDR M    KKYP Y
Sbjct: 129 LLIDGNYNFNRYPEWMNLKDCSTFYIKGDLRIVSIAAASILAKVSRDRYMISVSKKYPIY 188

Query: 172 GFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            FD H GY T  H+++I   G S IHR +F
Sbjct: 189 RFDQHKGYGTKLHEELILLHGLSDIHRRSF 218


>gi|308064100|gb|ADO05987.1| ribonuclease HII [Helicobacter pylori Sat464]
          Length = 204

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 63/190 (33%), Positives = 95/190 (50%), Gaps = 11/190 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG LAG + VA ++         +  G+ DSKK+S KKR  L +KI +   I
Sbjct: 2   ILGIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEI 61

Query: 82  --SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136
              +   S   ID   +      A+   +EN   +     IDG +   + +  P     +
Sbjct: 62  KFWVVKKSANEIDNLGLGACLKLAVQEILENDHSLANQIKIDGNTAFGLNKRYP-NIQTI 120

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           IKGD     IA AS++AK  +DR MR  H  + +YG+D + GY T +H + + + G +  
Sbjct: 121 IKGDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPF 180

Query: 197 HRLTFRPLRN 206
           HR +F  L+N
Sbjct: 181 HRHSF-TLKN 189


>gi|109946755|ref|YP_663983.1| ribonuclease HII [Helicobacter acinonychis str. Sheeba]
 gi|123173609|sp|Q17ZE2|RNH2_HELAH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|109713976|emb|CAJ98984.1| rnhB [Helicobacter acinonychis str. Sheeba]
          Length = 193

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 92/187 (49%), Gaps = 9/187 (4%)

Query: 28  GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS--AII 81
           GIDE GRG L G + VA ++       + +  G+ DSKK+S  KR  L +KI S      
Sbjct: 4   GIDEAGRGCLVGSLFVAGVVCGEKIALDFLKMGLKDSKKLSQNKRFFLEDKIKSHDEVKF 63

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139
            +   S   ID  ++      A+   +E L  + ++  IDG +             +IKG
Sbjct: 64  CVIKKSAGEIDSLSLGVCLKLAVQEILEKLSPLAQTINIDGNTAFGLNKRYSNLKTIIKG 123

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D     IA AS++AK ++DR M   H  + +YG+D + GY T KH + I + G +  HR 
Sbjct: 124 DEKIAQIAMASVLAKTSKDREMLELHALFKEYGWDKNCGYGTKKHIEAIAKLGATPFHRH 183

Query: 200 TFRPLRN 206
           +F  L+N
Sbjct: 184 SFA-LKN 189


>gi|332978396|gb|EGK15114.1| ribonuclease HII [Psychrobacter sp. 1501(2011)]
          Length = 308

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 73/237 (30%), Positives = 103/237 (43%), Gaps = 57/237 (24%)

Query: 27  AGIDEVGRGALAGPVVVAAIILD------------PNNIPFGINDSKKISHKKREELYEK 74
            GIDEVGRG L G VVV+  IL              +     + DSKK++  KRE L+E 
Sbjct: 65  IGIDEVGRGPLYGSVVVSGAILPCQWSAEIEQNPLQDTPLAILTDSKKLTEAKRERLFEP 124

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---------------------- 111
           I   A+   I       ID+ NI +ATL  +  A E +                      
Sbjct: 125 IKQQALAYMIVEIPASVIDEVNILQATLMGMRLACEQIMIEMVQALQSNLDKSLEVEGFL 184

Query: 112 -------QVIPRSALIDGRSIPE---------------DLPCQAFAVIKGDSISLSIAAA 149
                    I  + LIDG  +P+                    A A +KGD+   +IAAA
Sbjct: 185 DIHSSSQNHIAFNLLIDGNKVPDLDSQLLQHYNIGPELKHSVNAEAWVKGDARHSAIAAA 244

Query: 150 SIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           S++AKV+RDR +      +P YG + H GYPT  H + I++ G    HR +F+P++ 
Sbjct: 245 SVLAKVSRDRQLIKDGAAHPGYGLEGHKGYPTKAHIEAIQKLGVLPQHRRSFKPVQE 301


>gi|119963253|ref|YP_948173.1| ribonuclease HII [Arthrobacter aurescens TC1]
 gi|119950112|gb|ABM09023.1| putative ribonuclease HII [Arthrobacter aurescens TC1]
          Length = 256

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/214 (32%), Positives = 108/214 (50%), Gaps = 22/214 (10%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVA-AII-LDPNNIPFGINDSKKISHKK 67
           P  ++E       +  +AG+DEVGRGALAGPV V  A++ L+ + +   + DSK +  + 
Sbjct: 35  PTLDVERSFLSSGVRLLAGVDEVGRGALAGPVSVGIAVVNLENHGLLADVRDSKLLKPED 94

Query: 68  REELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHA---VENLQVIPRSALIDG- 122
           R+ L   +   A+ S +  AS + ID+  I  A   A   A   +    + P   L+DG 
Sbjct: 95  RDRLEPLVREWAVASAVGHASSREIDQIGIIAALRLAGTRAWFEILAGGITPDVVLLDGS 154

Query: 123 ------------RSIPEDLPC---QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                          P+  P         +K D   LS+AAAS++AKV RDR+M   H +
Sbjct: 155 HNWLSPDVQASLFDTPDSGPWCEAPVHTRVKADMSCLSVAAASVLAKVARDRIMVDLHSE 214

Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            P YG++ + GY T+ H+ VI+ +GPS  HR ++
Sbjct: 215 IPSYGWNVNKGYATSAHRDVIRLQGPSAHHRTSW 248


>gi|218530087|ref|YP_002420903.1| ribonuclease H [Methylobacterium chloromethanicum CM4]
 gi|218522390|gb|ACK82975.1| Ribonuclease H [Methylobacterium chloromethanicum CM4]
          Length = 216

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 74/183 (40%), Positives = 103/183 (56%), Gaps = 5/183 (2%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKKREELYEKITSS 78
              V G DEVGRGAL GPV+VAA+  DP   P      ++DSK++    RE L   I + 
Sbjct: 22  YPAVIGCDEVGRGALCGPVMVAAVWFDPVAFPPEILARLDDSKRLDRAAREALTPLIRAH 81

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           A +S+++ S   +D+ N+  ATLDA+  AV  L +   + L+DGR     L     AVI 
Sbjct: 82  ARVSLAAGSRALVDRVNVRGATLDAMRRAVLGLGLDA-TVLVDGRDPIPGLTQGCRAVIG 140

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD +   IAAASI+AK  RD +MR    ++P Y ++ + GY TA H   +  +G S  HR
Sbjct: 141 GDRLVPQIAAASIVAKTFRDEIMRRLAPRHPAYAWERNAGYGTAAHLAGLTAQGRSQHHR 200

Query: 199 LTF 201
           L+F
Sbjct: 201 LSF 203


>gi|317011523|gb|ADU85270.1| ribonuclease HII [Helicobacter pylori SouthAfrica7]
          Length = 204

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 65/188 (34%), Positives = 96/188 (51%), Gaps = 11/188 (5%)

Query: 28  GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAIIS- 82
           GIDE GRG LAG + VA ++ D       +  G+ DSKK+S KKR  L +KI S   +  
Sbjct: 4   GIDEAGRGCLAGSLFVAGVVCDEKTALEFLKMGLKDSKKLSPKKRFFLEDKIKSHDEVGF 63

Query: 83  -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138
            +   S + ID   +      AI   +EN + +     IDG +   + +  P     +IK
Sbjct: 64  FVVKKSAESIDSLGLGACLKLAIQEILENGRSLANEIKIDGNTAFGLDKRYPHIQ-TIIK 122

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD     IA AS++AK  +DR M   H  + +YG+D + GY T +H + I + G +  HR
Sbjct: 123 GDETIAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHR 182

Query: 199 LTFRPLRN 206
            +F  L+N
Sbjct: 183 HSF-TLKN 189


>gi|308235361|ref|ZP_07666098.1| ribonuclease HII [Gardnerella vaginalis ATCC 14018]
 gi|311115100|ref|YP_003986321.1| ribonuclease HII [Gardnerella vaginalis ATCC 14019]
 gi|310946594|gb|ADP39298.1| ribonuclease HII [Gardnerella vaginalis ATCC 14019]
          Length = 227

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 109/220 (49%), Gaps = 28/220 (12%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-----PFGINDSKKIS 64
           P F  E  + +     V G+DEVGRG+LAGPV+V A +   + I     P G+ DSK I+
Sbjct: 5   PSFNFEQDLLKSGFDWVIGLDEVGRGSLAGPVMVGAALFGADKINSGYFPDGLADSKLIN 64

Query: 65  HKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVEN--------LQVIP 115
             KRE L E + +     ++ S +++ ID+  I  A   A   A+ +        L+   
Sbjct: 65  AHKREGLLEPLENWCDAFAVGSCTNREIDEWGISYALGVAAIRAISDVQNSMRYKLENAH 124

Query: 116 RSALIDG-----------RSIPE-DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163
            +A++DG              P  D P +   ++K D    S++AAS+IAKVTRD LM  
Sbjct: 125 IAAILDGPFNYIGKVSGTFDAPSIDFPVKVHTLVKADQKCASVSAASVIAKVTRDSLMTS 184

Query: 164 A--HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
                KY  Y +  + GY +  H+  I E GPS +HR+++
Sbjct: 185 LSDDPKYKIYDWAHNKGYGSKSHRAAILEYGPSDLHRISW 224


>gi|254779865|ref|YP_003057971.1| ribonuclease HII [Helicobacter pylori B38]
 gi|254001777|emb|CAX30008.1| Ribonuclease HII (RNase HII) [Helicobacter pylori B38]
          Length = 204

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 62/192 (32%), Positives = 93/192 (48%), Gaps = 9/192 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII 81
           V GIDE GRG LAG + VA ++         +  G+ DSKK+S KKR  L +KI +   +
Sbjct: 2   VLGIDEAGRGCLAGSLFVAGVVCSEKTALEFLKMGLKDSKKLSPKKRFFLEDKIKTHGEV 61

Query: 82  S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVI 137
              +   S   ID   +      AI   +EN   +     IDG +             +I
Sbjct: 62  GFFVVKKSANEIDSLGLGACLKLAIQEILENGCSLANEIKIDGNTAFGLNKRYSNIQTII 121

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGD     IA AS++AK  +DR M   H  + +YG+D + GY T +H + + + G +  H
Sbjct: 122 KGDETIAQIAMASVLAKAAKDREMLELHALFKEYGWDKNCGYGTKQHIEAMSKLGATPFH 181

Query: 198 RLTFRPLRNLSV 209
           R +F  L+N ++
Sbjct: 182 RHSF-TLKNRTL 192


>gi|255321778|ref|ZP_05362933.1| ribonuclease HII [Campylobacter showae RM3277]
 gi|255301258|gb|EET80520.1| ribonuclease HII [Campylobacter showae RM3277]
          Length = 191

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 61/183 (33%), Positives = 98/183 (53%), Gaps = 8/183 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           + GIDE GRGALAGP+ VAA +L  +    G+NDSKK++ K+REEL ++I  ++   I+ 
Sbjct: 9   ICGIDEAGRGALAGPMAVAACVLKRD--IAGLNDSKKLTEKRREELLKEIIKNSEFLIAY 66

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S++ ID+  + +    A+   +          L DG +   +       ++  D     
Sbjct: 67  FSNEQIDELGLSECLRRALR--LFKAHFTDCELLYDGNA---NYGTGIKTMVGADGKVAQ 121

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           ++AASI+AKV+RD LM+     +  YG+ +H GY T  H   I   G S + R +FR ++
Sbjct: 122 VSAASILAKVSRDALMQAWDGVHSGYGYATHKGYGTKAHLDAIARLGDSPLQRRSFR-VK 180

Query: 206 NLS 208
           +  
Sbjct: 181 SFE 183


>gi|301167133|emb|CBW26712.1| ribonuclease HII [Bacteriovorax marinus SJ]
          Length = 227

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 116/225 (51%), Gaps = 32/225 (14%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF---------GINDSKK 62
           F+LE +    +   +AG DEVGRG LAGPVV   +++D +++           GI DSKK
Sbjct: 2   FDLEEI---GDFDFLAGCDEVGRGPLAGPVVGCCVLVDRDSLTVENVDFLLSHGITDSKK 58

Query: 63  ISHKKREEL--------YEKITSSAI---------ISISSASHQYIDKHNIHKATLDAIY 105
           IS  KR+++        YE  + +++          S+   S++ ID+ NI +A+L A+ 
Sbjct: 59  ISATKRKKILKSLGIEKYELASKNSLTLNKNLKISFSVREISNESIDQLNILRASLKAMG 118

Query: 106 HA-VENLQVIPRSALIDGRS-IPEDL-PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162
            A ++         LIDG   I   L       VIKGDS S  I  ASIIAK  RD LM 
Sbjct: 119 DAFIDCFSGERTKLLIDGNKYIDLGLENVSEEFVIKGDSKSALIGLASIIAKEYRDNLMI 178

Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
              KKYP YG + H GYPT  H+  I + G + IHR +F+ ++  
Sbjct: 179 EMGKKYPGYGLEKHAGYPTKFHKDAISKLGVTPIHRKSFKGVKEF 223


>gi|288962307|ref|YP_003452602.1| ribonuclease HII [Azospirillum sp. B510]
 gi|288914573|dbj|BAI76058.1| ribonuclease HII [Azospirillum sp. B510]
          Length = 221

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 85/214 (39%), Positives = 113/214 (52%), Gaps = 27/214 (12%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII-------------LDPNNIP 54
           +RP   LEA         V GIDEVGRG L G                     L P  I 
Sbjct: 14  QRPDLSLEAGFGAG--RRVCGIDEVGRGPLCG--------PVVAAAVVLPAEGLPPE-IA 62

Query: 55  FGINDSKKISHKKREELYEKITSSAIISISSASHQYI-DKHNIHKATLDAIYHAVENL-Q 112
             I+DSK ++ + REE+   I + A+    + +     D+ NIH+ATL A+  A E L  
Sbjct: 63  AQIDDSKAVTRRLREEIEPAIRAHALAFAIAEASAAEIDELNIHRATLLAMRRAYEALPG 122

Query: 113 VIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172
           V P +ALIDG+  P D+ C+  AV+KGDS SLSIAAASI+AKV RD  M      YP YG
Sbjct: 123 VPPDAALIDGKFTP-DIACERVAVVKGDSRSLSIAAASILAKVARDSEMLRLSAVYPHYG 181

Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           +D + GYPT +H   +   G +  HR++F P++ 
Sbjct: 182 WDRNAGYPTPEHLDALTRHGVTPHHRVSFAPVKR 215


>gi|224372133|ref|YP_002606505.1| ribonuclease HII [Nautilia profundicola AmH]
 gi|223589086|gb|ACM92822.1| ribonuclease HII [Nautilia profundicola AmH]
          Length = 196

 Score =  191 bits (487), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 73/194 (37%), Positives = 101/194 (52%), Gaps = 17/194 (8%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN----------NIPFGINDSKKISHKKREELYEKI 75
           + GIDE GRG +AGP+VVA  I              N    +NDSKK++ KKREEL+E I
Sbjct: 5   ICGIDEAGRGPIAGPLVVAGCIFKNEKLKVKSEKWENFLQKLNDSKKLNAKKREELFEII 64

Query: 76  TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ-AF 134
             +    I    ++ ID+  +  A   A+    + L+      L DG S   +   +   
Sbjct: 65  QETCEYHIVFVDNKTIDEKGLSFAINYALNEIKKTLK--ANKYLFDGNS---NFGVKGIE 119

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            +IKGD     I+AASI+AKV+RD+ M     KYP Y F  H GY T +H + IK+ G S
Sbjct: 120 TLIKGDGKIKQISAASILAKVSRDKYMLEIADKYPMYNFKKHKGYITKEHIEEIKKNGFS 179

Query: 195 CIHRLTFRPLRNLS 208
            IHR ++R L+ L 
Sbjct: 180 DIHRKSYR-LKALE 192


>gi|220912962|ref|YP_002488271.1| ribonuclease HII [Arthrobacter chlorophenolicus A6]
 gi|219859840|gb|ACL40182.1| Ribonuclease H [Arthrobacter chlorophenolicus A6]
          Length = 260

 Score =  191 bits (487), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 76/219 (34%), Positives = 112/219 (51%), Gaps = 22/219 (10%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVA-AII-LDPNNIPFGINDSKKISH 65
           + P    E   + + +  +AG+DEVGRGALAGPV V  A++ L+      G+ DSK +  
Sbjct: 28  KAPTLRHERTFKAQGVRFLAGVDEVGRGALAGPVSVGIAVVDLERQKPLAGVRDSKLLRA 87

Query: 66  KKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALID 121
            +RE L   +   ++ S +  AS   ID   I  A   A   A +++    VIP   L+D
Sbjct: 88  TERERLEPLVRRWSVASAVGHASAHEIDALGIIAALRLAGTRAWQDILAAGVIPDMVLLD 147

Query: 122 GRS-----------IPEDLP-----CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165
           G               ++ P           +K D   LS+AAAS+IAKV RDR MR  H
Sbjct: 148 GSHNWLSPAEQLSLFDQEAPEAACDAPVHTKVKADMQCLSVAAASVIAKVERDRTMRELH 207

Query: 166 KKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            +YPD+G+D + GY T  H+ V++  GP+  HR+++R L
Sbjct: 208 AEYPDFGWDINNGYATVLHRDVLRAAGPTPYHRVSWRLL 246


>gi|1296968|emb|CAA65177.1| rnhB [Porphyromonas gingivalis]
          Length = 168

 Score =  191 bits (487), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 61/159 (38%), Positives = 85/159 (53%), Gaps = 1/159 (0%)

Query: 47  ILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIY 105
           IL  +     +NDSK++S K+R  L   I S  I   I   S Q ID+ NI +A+  A++
Sbjct: 1   ILPADFSHPLLNDSKQLSEKQRYTLRPVIESETIGWGIGIVSPQEIDEINILRASFLAMH 60

Query: 106 HAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165
            A+E L   P   LIDG             ++ GD+   SIAAASI+AK  RD  M   +
Sbjct: 61  RAIEQLPFRPERLLIDGNRFDPFEQIPHHCIVGGDARYRSIAAASILAKTYRDDSMLRLN 120

Query: 166 KKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           K +P YG++ + GYP+  H+  I+  G S  HRLTFR +
Sbjct: 121 KDFPMYGWERNKGYPSPAHKSAIRRFGVSPHHRLTFRGV 159


>gi|92112710|ref|YP_572638.1| RNase HII [Chromohalobacter salexigens DSM 3043]
 gi|122420710|sp|Q1R019|RNH2_CHRSD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|91795800|gb|ABE57939.1| RNase HII [Chromohalobacter salexigens DSM 3043]
          Length = 200

 Score =  191 bits (486), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 70/195 (35%), Positives = 97/195 (49%), Gaps = 20/195 (10%)

Query: 25  PVAGIDEVGRGALAGPVVVAAI---------ILDPNNIPFGINDSKKISHKKREELYEKI 75
            +AG+DEVGRG L                  ILDP     G+ DSK +S K+R  L + I
Sbjct: 15  RLAGVDEVGRGPL---------VGAVVAAAVILDPARPIEGLADSKTLSEKRRLALADAI 65

Query: 76  TSSAIISISSASHQY-IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
              A     + +    ID  NI  AT  A+  A++ L V     L+DG  +P        
Sbjct: 66  REQAAACAVAEASAEEIDALNIFHATHLAMRRAIDALPVTAEYLLVDGNRMP-GHHVPGQ 124

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
            V+KGD    +I AASI+AKVTRD  M   H+++P+YGF  H GYPT +H   ++  GP 
Sbjct: 125 CVVKGDRRHAAIGAASILAKVTRDAQMVALHERHPEYGFARHKGYPTREHLAALERLGPL 184

Query: 195 CIHRLTFRPLRNLSV 209
             HR +F P++   +
Sbjct: 185 EEHRRSFAPVKQWQL 199


>gi|257784502|ref|YP_003179719.1| Ribonuclease H [Atopobium parvulum DSM 20469]
 gi|257473009|gb|ACV51128.1| Ribonuclease H [Atopobium parvulum DSM 20469]
          Length = 257

 Score =  191 bits (486), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 82/194 (42%), Positives = 113/194 (58%), Gaps = 7/194 (3%)

Query: 13  ELEAMVREK----NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
            +E M R +        V G+DEVGRG++AGP+ V A+ L    I +G+NDSKK++  KR
Sbjct: 55  RVEEMYRFQKEFSGGGLVVGVDEVGRGSVAGPLTVCAVCLPDEPIIYGLNDSKKLTATKR 114

Query: 69  EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           E L E+I   A  I I+  S Q ID+  + +   DA+  AV+N  + P   LIDG   P 
Sbjct: 115 EILAEQIQEVATAIGIAHISPQRIDEVGMAQCLRDAMLQAVKNTGIEPDCVLIDGN--PM 172

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +  +   ++KGD+   SIAAASI+AKVTRD LM    ++YP Y      GY +A+H + 
Sbjct: 173 HIHPKEKTLVKGDARIASIAAASIVAKVTRDALMVAYDEEYPGYYLAECKGYASAEHIKA 232

Query: 188 IKEKGPSCIHRLTF 201
           I EKG S IHR +F
Sbjct: 233 IGEKGLSPIHRASF 246


>gi|227495319|ref|ZP_03925635.1| possible ribonuclease H [Actinomyces coleocanis DSM 15436]
 gi|226831189|gb|EEH63572.1| possible ribonuclease H [Actinomyces coleocanis DSM 15436]
          Length = 228

 Score =  191 bits (486), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 70/216 (32%), Positives = 105/216 (48%), Gaps = 27/216 (12%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           E E  +  +    V GIDEVGRGALAGPV V A +      P G+ DSK +S K+RE   
Sbjct: 16  EFERQLASQ-YGTVIGIDEVGRGALAGPVGVGACVAGLGEPPLGLTDSKALSLKQREHFV 74

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSI--- 125
                 A   +++ AS++ +D+  I  A   A   A+EN++   V+    L+DG      
Sbjct: 75  SLAQEWAYPWAVTYASNREVDELGIITALRLAGIRALENIKEAGVVADVVLLDGSHDWLT 134

Query: 126 -PEDLPC----------------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
            P+DL                       +K D+    +AAAS++AKV RD+LM       
Sbjct: 135 PPQDLFSFDTAPLVERFQAVGAPPVVMKVKADASCSVVAAASVMAKVARDKLMEELPD-- 192

Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           P YG+  + GY +A H++ I+  G S  HR +++ +
Sbjct: 193 PGYGWAKNKGYGSAAHREAIRSLGVSQWHRTSWKLV 228


>gi|217033640|ref|ZP_03439068.1| hypothetical protein HP9810_899g76 [Helicobacter pylori 98-10]
 gi|216943986|gb|EEC23420.1| hypothetical protein HP9810_899g76 [Helicobacter pylori 98-10]
          Length = 204

 Score =  191 bits (485), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 11/188 (5%)

Query: 28  GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS--AII 81
           GIDE GRG LAG + VA ++         +  G+ DSKK+S KKR  L ++I S      
Sbjct: 4   GIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEKEIRSHDEVKF 63

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138
            +   S   ID   +      AI   +EN + +     IDG +   + +  P     +IK
Sbjct: 64  WVVKKSANEIDNLGLGACLKLAIQEILENGRSLANGIKIDGNTAFGLNKRYP-NIQTIIK 122

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD     IA AS++AK  +DR MR  H  + +YG+D + GY T +H + + + G +  HR
Sbjct: 123 GDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPFHR 182

Query: 199 LTFRPLRN 206
            +F  L+N
Sbjct: 183 HSF-TLKN 189


>gi|225677449|ref|ZP_03788413.1| ribonuclease HII [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225590507|gb|EEH11770.1| ribonuclease HII [Wolbachia endosymbiont of Muscidifurax uniraptor]
          Length = 149

 Score =  191 bits (485), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 61/148 (41%), Positives = 90/148 (60%), Gaps = 1/148 (0%)

Query: 59  DSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118
           DSKK++ + R+ LYEKI S A   I  AS + I+ +NI +AT  ++  A+ +L +     
Sbjct: 1   DSKKLTPQCRQVLYEKIISVAKFGIGMASVEEINSYNILQATKLSMKRALIDLDLELDYV 60

Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
           L+DG   PE +  Q  +++ GD++S SIAAASI+AKVTRDRLM+  H K+P+Y +  + G
Sbjct: 61  LVDGNQPPE-VKWQVKSIVNGDNLSTSIAAASIVAKVTRDRLMQELHNKHPEYNWYKNKG 119

Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           Y T +H   I   G +  HR  F P+  
Sbjct: 120 YGTKEHLNAIGLYGITEHHRKNFAPISR 147


>gi|300854482|ref|YP_003779466.1| putative ribonuclease HII [Clostridium ljungdahlii DSM 13528]
 gi|300434597|gb|ADK14364.1| predicted ribonuclease HII [Clostridium ljungdahlii DSM 13528]
          Length = 285

 Score =  191 bits (485), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 82/205 (40%), Positives = 116/205 (56%), Gaps = 11/205 (5%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKI 63
           R  +E +      N    AG+DEVGRG LAGP+   A+IL+ N      +  GI DSKK+
Sbjct: 85  RKMYEFDKSF--GNHIYTAGVDEVGRGPLAGPIAAGAVILNLNYNEDRELILGIKDSKKL 142

Query: 64  SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           + K+R EL + I   A+  +I+  ++  IDK  I     + +  AVE L++    AL DG
Sbjct: 143 TPKRRCELAKVIKERALAYNIAVINNIEIDKRGISWCNNEVLKRAVEGLKLPVTMALSDG 202

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
            ++ ++L      VIKGD+ S SIAAASIIAKV RD LM      Y +Y F+ + GY T 
Sbjct: 203 YAV-KNLSTNNEFVIKGDTKSASIAAASIIAKVYRDSLMEEYSHLYTNYKFEQNSGYGTK 261

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207
            H + IK+ G   IHR++F  L+N+
Sbjct: 262 DHIESIKKYGICKIHRVSF--LKNI 284


>gi|289426375|ref|ZP_06428118.1| ribonuclease HII [Propionibacterium acnes SK187]
 gi|289153103|gb|EFD01821.1| ribonuclease HII [Propionibacterium acnes SK187]
          Length = 188

 Score =  191 bits (485), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 68/173 (39%), Positives = 89/173 (51%), Gaps = 4/173 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELY 72
           E  +    + PVAG DE GRGA AGP+V AA+ILD        G+ DSK +S  KRE L+
Sbjct: 17  ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 76

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131
             I   A+ +S         D+  + +A +  +  AV  L V P   L DG  +   L  
Sbjct: 77  NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-HGLTV 135

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
               + KGDS+   +AAASI+AKV RDR+M     + P Y F  H GY TA H
Sbjct: 136 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALH 188


>gi|221194830|ref|ZP_03567887.1| putative ribonuclease HII [Atopobium rimae ATCC 49626]
 gi|221185734|gb|EEE18124.1| putative ribonuclease HII [Atopobium rimae ATCC 49626]
          Length = 263

 Score =  191 bits (485), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 70/181 (38%), Positives = 102/181 (56%), Gaps = 3/181 (1%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80
               + G+DEVGRG +AGP+ V A++L    +  G+NDSKK+S  +RE +  +I   A+ 
Sbjct: 74  GSGIIVGVDEVGRGPVAGPLTVGAVVLSDTPLIDGLNDSKKLSAARRETIAARIAKVALA 133

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
           I ++      ID+  +  A   A+  A+E   V P   LIDG   P  +  +   ++KGD
Sbjct: 134 IGMAFIEPAEIDEIGMSAALRKAMEIAIEQTGVDPDCVLIDGN--PVHVHPREKTIVKGD 191

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           +   SIAAASI+AKV+RD LM     +YP Y F  + GY +A H + I + G + IHR T
Sbjct: 192 AKIASIAAASIVAKVSRDALMVDYDAQYPAYHFAQNKGYASADHIKAIADYGLTPIHRTT 251

Query: 201 F 201
           F
Sbjct: 252 F 252


>gi|254424377|ref|ZP_05038095.1| ribonuclease HII [Synechococcus sp. PCC 7335]
 gi|196191866|gb|EDX86830.1| ribonuclease HII [Synechococcus sp. PCC 7335]
          Length = 199

 Score =  191 bits (485), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 72/178 (40%), Positives = 102/178 (57%), Gaps = 4/178 (2%)

Query: 29  IDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISIS 84
           +DEVGRGAL GPVV AA+I+  + I      G+ DSK +S K+R +L  +I S     I 
Sbjct: 1   MDEVGRGALFGPVVAAAVIVPDSAIASLVSAGVTDSKALSAKRRTQLAVEIRSLTAFGIG 60

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            ++   ID+ NI +A+L A+  A+  L  +P   LIDG     DLP +   +++GD   L
Sbjct: 61  LSTVYEIDRINILQASLLAMRRAIFQLPWMPDKCLIDGNQRIFDLPIEQETIVRGDQSVL 120

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           +IAAASI+AKV RD L+    + YP Y   S+ GY +A H+  I   G    HR +F+
Sbjct: 121 AIAAASILAKVWRDDLVSRLDRHYPGYDLVSNKGYGSANHRAGIARYGICRQHRQSFK 178


>gi|317181045|dbj|BAJ58831.1| ribonuclease HII [Helicobacter pylori F32]
          Length = 204

 Score =  190 bits (484), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 63/187 (33%), Positives = 92/187 (49%), Gaps = 9/187 (4%)

Query: 28  GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII-- 81
           GIDE GRG LAG + VA ++         +  G+ DSKK+S KKR  L +KI +   I  
Sbjct: 4   GIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEIKF 63

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139
            +   S   ID   +      AI   +EN + +     IDG +             +IKG
Sbjct: 64  WVVKKSANEIDNLGLGACLKLAIQEILENDRSLANQIKIDGNTAFGLNKRYSNIQTIIKG 123

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D     IA AS++AK  +DR MR  H  + +YG+D + GY T +H + + + G +  HR 
Sbjct: 124 DEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPFHRH 183

Query: 200 TFRPLRN 206
           +F  L+N
Sbjct: 184 SF-TLKN 189


>gi|317178062|dbj|BAJ55851.1| ribonuclease HII [Helicobacter pylori F16]
          Length = 204

 Score =  190 bits (484), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 62/189 (32%), Positives = 93/189 (49%), Gaps = 9/189 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG LAG + VA ++         +  G+ DSKK+S KKR  L +KI +   +
Sbjct: 2   ILGIDEAGRGCLAGSLFVAGVVCSEKTASEFLSMGLKDSKKLSPKKRFFLEDKIKTHGEV 61

Query: 82  --SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVI 137
              +   S   ID   +      AI   +EN + +     IDG +             +I
Sbjct: 62  EFWVVKKSANEIDSLGLGACLKLAIQEILENGRSLANGIKIDGNTAFGLNKRHSNIQTII 121

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGD     IA AS++AK  +DR MR  H  + +YG+D + GY T +H + + + G +  H
Sbjct: 122 KGDEKIAQIAMASVLAKAFKDREMRQLHALFEEYGWDKNCGYGTKQHIEAMIKLGATPFH 181

Query: 198 RLTFRPLRN 206
           R +F  L+N
Sbjct: 182 RHSF-TLKN 189


>gi|149194772|ref|ZP_01871867.1| Ribonuclease H [Caminibacter mediatlanticus TB-2]
 gi|149135195|gb|EDM23676.1| Ribonuclease H [Caminibacter mediatlanticus TB-2]
          Length = 192

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 69/191 (36%), Positives = 101/191 (52%), Gaps = 13/191 (6%)

Query: 26  VAGIDEVGRGALAGPVVVAAIIL--------DPNNIPFGINDSKKISHKKREELYEKITS 77
           + GIDE GRG +AGP+V+A ++           N     + DSKK+S KKREEL+E I  
Sbjct: 3   ICGIDEAGRGPIAGPLVMAGVMFLMENGKWKMSNEYFEKLTDSKKLSPKKREELFEVIKE 62

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137
           ++I  I    ++ IDK  +  A    +   +   ++  +  L DG +       +     
Sbjct: 63  NSIYHIVFIDNETIDKKGLSFAIKFGLNEIIS--KINAKEYLFDGNTNFGIKKIKPIIK- 119

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
            GD     I+AASI+AKV+RDR M    KKYP+Y F  H GY T +H  +IK+ G S IH
Sbjct: 120 -GDLKIKEISAASILAKVSRDRFMIEIDKKYPEYNFKKHKGYITKEHINLIKKYGFSDIH 178

Query: 198 RLTFRPLRNLS 208
           R +++ L+ L 
Sbjct: 179 RKSYK-LKALE 188


>gi|87301873|ref|ZP_01084707.1| ribonuclease HII [Synechococcus sp. WH 5701]
 gi|87283441|gb|EAQ75396.1| ribonuclease HII [Synechococcus sp. WH 5701]
          Length = 198

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 67/184 (36%), Positives = 98/184 (53%), Gaps = 5/184 (2%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS 78
              +AG+DEVGRG L GPV  AA++L           G+ DSK +  + R+ L   IT+ 
Sbjct: 3   HRVLAGVDEVGRGCLFGPVFAAAVVLPAQAAAPLAAAGLTDSKALRPRHRQRLVPLITAQ 62

Query: 79  A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137
           A   ++  AS   ID   I  AT  A+  A++ L   P   ++DG       P +   ++
Sbjct: 63  AEAWALGQASAADIDHIGIRAATEKAMVRALQRLPQAPALVVVDGVLPLRLWPGRQRTLV 122

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
            GD   L+IAAAS++AK  RD L+    + +P YG + H GY TA H++ +   GPS +H
Sbjct: 123 HGDRRCLAIAAASVLAKQARDALIVRLAEGFPGYGLERHAGYGTALHREALIRLGPSRLH 182

Query: 198 RLTF 201
           RL+F
Sbjct: 183 RLSF 186


>gi|308062608|gb|ADO04496.1| ribonuclease HII [Helicobacter pylori Cuz20]
          Length = 204

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 62/190 (32%), Positives = 94/190 (49%), Gaps = 11/190 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG LAG + VA ++         +  G+ DSKK+  KKR  L +KI +   I
Sbjct: 2   ILGIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLGPKKRFFLEDKIKTHGEI 61

Query: 82  --SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136
              +   S   ID   +      A+   +EN   +     IDG +   + +  P     +
Sbjct: 62  KFWVVKKSANEIDNLGLGVCLKLAVQEILENDHSLANQIKIDGNTAFGLNKRYP-NIQTI 120

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           IKGD     IA AS++AK  +DR MR  H  + +YG+D + GY T +H + + + G +  
Sbjct: 121 IKGDERIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPF 180

Query: 197 HRLTFRPLRN 206
           HR +F  L+N
Sbjct: 181 HRHSF-TLKN 189


>gi|312879567|ref|ZP_07739367.1| RNase HII [Aminomonas paucivorans DSM 12260]
 gi|310782858|gb|EFQ23256.1| RNase HII [Aminomonas paucivorans DSM 12260]
          Length = 189

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 72/184 (39%), Positives = 103/184 (55%), Gaps = 5/184 (2%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS-S 78
             VAG DE GRG LAGPVV AA +L P+     +  G+ DSK ++ ++RE L+  +    
Sbjct: 1   MIVAGTDEAGRGPLAGPVVAAAAVLTPDQRRRLMQRGLGDSKALTPRRRESLFALMEELG 60

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
            +    +AS   ID  NI  A+L A+  A   L   P   ++DG +    L      +  
Sbjct: 61  VLWRAQAASAARIDGTNILAASLWAMGRATVALDPPPDLVVVDGNARIPGLSLPQRCLPG 120

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD++  ++ AAS++AKV RDR M    + YP YGF  H GYPTA+H++ ++  GPS +HR
Sbjct: 121 GDALVPAVMAASVVAKVLRDRAMESLDRLYPGYGFAKHKGYPTAEHRRALERLGPSPVHR 180

Query: 199 LTFR 202
            TFR
Sbjct: 181 ATFR 184


>gi|312194955|ref|YP_004015016.1| ribonuclease H [Frankia sp. EuI1c]
 gi|311226291|gb|ADP79146.1| Ribonuclease H [Frankia sp. EuI1c]
          Length = 240

 Score =  189 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 77/201 (38%), Positives = 115/201 (57%), Gaps = 4/201 (1%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKRE 69
           F  E  +  + + PVAG+DE GRGA AGP+VVAA+ILDP        + DSK ++ + RE
Sbjct: 15  FGYERALARRGLGPVAGVDEAGRGACAGPLVVAAVILDPRRTGRLAELADSKLLTERIRE 74

Query: 70  ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            +YE + + A   S+       ID+H +H   +  +  AV  L + P   L+DG  +P  
Sbjct: 75  RVYEDVLAVASAWSVVVIPAAEIDRHGLHVMNITGMRRAVARLAIHPGYVLVDGFPVP-G 133

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           +   + AV KGD ++  +AAAS++AKVTRDR+M    ++Y +Y F  H GY TA H   +
Sbjct: 134 IDTPSLAVRKGDRVAACVAAASVVAKVTRDRIMCQLDERYGEYDFAQHKGYVTAAHAAAL 193

Query: 189 KEKGPSCIHRLTFRPLRNLSV 209
              GP   HRL++  +++L V
Sbjct: 194 ARHGPCEEHRLSYANVQSLIV 214


>gi|289523589|ref|ZP_06440443.1| ribonuclease HII [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503281|gb|EFD24445.1| ribonuclease HII [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 193

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 73/192 (38%), Positives = 100/192 (52%), Gaps = 21/192 (10%)

Query: 24  WPVAGIDEVGRGALAGP------------VVVAAIILDPNNIPFGINDSKKISHKKREEL 71
             V G+DE GRG LAGP            +     +L       G+ DSK +S K+REE+
Sbjct: 1   MIVVGVDEAGRGPLAGPVVAAAVAATREKMS----LLKS----VGVTDSKALSSKRREEI 52

Query: 72  YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
           +  +     I    +A+  +ID+ NI +ATL A+  AV +L + P   ++DG      LP
Sbjct: 53  FLLLRRYGFIYRAQAANPWFIDRANILQATLWAMEKAVSSLSLSPDIVIVDGNQKIPGLP 112

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
               A+ K D   L + AASI+AKV RDR+M    K YP YGF  H GYPT +H+  +  
Sbjct: 113 FPQKALPKADKNVLVVGAASIVAKVIRDRVMCAYDKLYPGYGFAVHKGYPTKEHRIALAL 172

Query: 191 KGPSCIHRLTFR 202
            G S IHR TF+
Sbjct: 173 MGASPIHRKTFK 184


>gi|313141283|ref|ZP_07803476.1| ribonuclease [Helicobacter canadensis MIT 98-5491]
 gi|313130314|gb|EFR47931.1| ribonuclease [Helicobacter canadensis MIT 98-5491]
          Length = 194

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 87/185 (47%), Gaps = 9/185 (4%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI---PFGINDSKKISHKKREELYEKITS 77
            N   + GIDE GRG + G + V  +IL  +        + DSKK+S K R+ L  +I  
Sbjct: 2   HNPLEICGIDEAGRGCIGGSLFVCGVILGKSFPQSLLSQLQDSKKLSPKVRDTLAPQIKQ 61

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA-FAV 136
            A   +   + Q ID   +     +A+   +  L+      L DG     +   Q+   +
Sbjct: 62  YAQFHLVKKTAQEIDLKGLSLCLKEALQEILTYLKSA--HYLFDGNC---NFKIQSLQTL 116

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           IKGDS   +I+AASI+AK  +D+        YP YGF SH GY T  H + I + G    
Sbjct: 117 IKGDSKVYAISAASILAKNAKDKESMELDLIYPQYGFKSHKGYGTKAHIEAISKFGYCKE 176

Query: 197 HRLTF 201
           HR ++
Sbjct: 177 HRKSY 181


>gi|224417741|ref|ZP_03655747.1| ribonuclease HII RNase HII [Helicobacter canadensis MIT 98-5491]
 gi|253827085|ref|ZP_04869970.1| ribonuclease HII [Helicobacter canadensis MIT 98-5491]
 gi|253510491|gb|EES89150.1| ribonuclease HII [Helicobacter canadensis MIT 98-5491]
          Length = 204

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 87/185 (47%), Gaps = 9/185 (4%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI---PFGINDSKKISHKKREELYEKITS 77
            N   + GIDE GRG + G + V  +IL  +        + DSKK+S K R+ L  +I  
Sbjct: 12  HNPLEICGIDEAGRGCIGGSLFVCGVILGKSFPQSLLSQLQDSKKLSPKVRDTLAPQIKQ 71

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA-FAV 136
            A   +   + Q ID   +     +A+   +  L+      L DG     +   Q+   +
Sbjct: 72  YAQFHLVKKTAQEIDLKGLSLCLKEALQEILTYLKSA--HYLFDGNC---NFKIQSLQTL 126

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           IKGDS   +I+AASI+AK  +D+        YP YGF SH GY T  H + I + G    
Sbjct: 127 IKGDSKVYAISAASILAKNAKDKESMELDLIYPQYGFKSHKGYGTKAHIEAISKFGYCKE 186

Query: 197 HRLTF 201
           HR ++
Sbjct: 187 HRKSY 191


>gi|188528111|ref|YP_001910798.1| ribonuclease HII [Helicobacter pylori Shi470]
 gi|238691950|sp|B2UV86|RNH2_HELPS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|188144351|gb|ACD48768.1| ribonuclease HII [Helicobacter pylori Shi470]
          Length = 204

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/190 (32%), Positives = 95/190 (50%), Gaps = 11/190 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG LAG + VA ++         +  G+ DSKK+  KKR  L +KI +   I
Sbjct: 2   ILGIDEAGRGCLAGSLFVAGVVCGEKTALEFLEMGLKDSKKLGPKKRFFLEDKIKTHGEI 61

Query: 82  --SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136
              +   S   ID   +      A+   +EN + +     IDG +   + +  P     +
Sbjct: 62  KFWVVKKSANEIDNLGLGACLKLAVQEILENGRSLANQIKIDGNTAFGLNKRYP-NIQTI 120

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           IKGD     IA AS++AK  +DR MR  H  + +YG+D + GY T +H + + + G +  
Sbjct: 121 IKGDERIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPF 180

Query: 197 HRLTFRPLRN 206
           HR +F  L+N
Sbjct: 181 HRHSF-TLKN 189


>gi|332674122|gb|AEE70939.1| ribonuclease HII [Helicobacter pylori 83]
          Length = 204

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/187 (33%), Positives = 92/187 (49%), Gaps = 9/187 (4%)

Query: 28  GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII-- 81
           GIDE GRG LAG + VA ++ +       +  G+ DSKK+S KKR  L +KI +   I  
Sbjct: 4   GIDEAGRGCLAGSLFVAGVVCNEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEIKF 63

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139
            +   S   ID   +      AI   +EN + +     IDG +             +IKG
Sbjct: 64  WVVKKSANEIDNLGLGVCLKLAIQEILENGRSLTNKIKIDGNTAFGLNKRYSNIQTIIKG 123

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D     IA AS++AK  +DR M   H  + +YG+D + GY T +H + + + G +  HR 
Sbjct: 124 DEKIAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAMIKLGATPFHRH 183

Query: 200 TFRPLRN 206
           +F  L+N
Sbjct: 184 SF-TLKN 189


>gi|294867798|ref|XP_002765242.1| ribonuclease hii, putative [Perkinsus marinus ATCC 50983]
 gi|239865237|gb|EEQ97959.1| ribonuclease hii, putative [Perkinsus marinus ATCC 50983]
          Length = 630

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 84/201 (41%), Positives = 113/201 (56%), Gaps = 16/201 (7%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKK-REELYEKITSS 78
           K +  V G+DE GRG L GPVV AA+ ++ +  IP+GI DSK IS+++ R+ +YE++T++
Sbjct: 5   KAVDIVIGVDEAGRGPLCGPVVAAAVYINQDTYIPYGICDSKTISNEEYRDMMYEQLTNN 64

Query: 79  --AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR------SALIDGRSIPE--- 127
                S+    ++ ID  NI +AT  A   AV  L             LIDG  +P    
Sbjct: 65  KGVKWSVGIVDNKVIDTINILQATFTAKTEAVLKLTKDGEGRKSKYHVLIDGNRVPPQLL 124

Query: 128 ---DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
              ++  Q   ++KGDS    IAAASIIAKVTRDR+M   H   P Y    H GYPT  H
Sbjct: 125 NNNNINLQCTPIVKGDSKEYIIAAASIIAKVTRDRIMHHIHNNIPQYNVSQHKGYPTTAH 184

Query: 185 QQVIKEKGPSCIHRLTFRPLR 205
             ++K  GPS  HRLTF PL+
Sbjct: 185 IALLKRLGPSKYHRLTFAPLK 205


>gi|308177303|ref|YP_003916709.1| ribonuclease HII [Arthrobacter arilaitensis Re117]
 gi|307744766|emb|CBT75738.1| ribonuclease HII [Arthrobacter arilaitensis Re117]
          Length = 241

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 66/221 (29%), Positives = 103/221 (46%), Gaps = 22/221 (9%)

Query: 3   CNSIPERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GIND 59
            +S  +    E E  +  K  +  +A +DEVGRGALAGP+ V   ++D   +     + D
Sbjct: 2   ADSKSKATTLEHERALAAKHGVRYIAAVDEVGRGALAGPITVGMTVIDIQQVTEFPALRD 61

Query: 60  SKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118
           SK +S   R  L + +   A+   +  AS   ID+  +  A   A   A+    + P +A
Sbjct: 62  SKLLSPDTRMALVDPVRQWAVGYGVGHASATEIDELGVTGALRLAGSRAMVQCAIQPEAA 121

Query: 119 LIDGR------------------SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160
           L+DG                     P  L      ++KGD    +IA ASI+AKV RD +
Sbjct: 122 LLDGSYDWLTAPEPDLFDILADDREPVGLRIPVATIVKGDMTCQAIAGASILAKVERDVI 181

Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           M     ++PD+G++ + GY TA H+  I  +GP   HR ++
Sbjct: 182 MVGLATEHPDFGWEINKGYATAAHRAAIVAQGPCDYHRKSW 222


>gi|256379913|ref|YP_003103573.1| ribonuclease H [Actinosynnema mirum DSM 43827]
 gi|255924216|gb|ACU39727.1| Ribonuclease H [Actinosynnema mirum DSM 43827]
          Length = 258

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 70/197 (35%), Positives = 110/197 (55%), Gaps = 4/197 (2%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKR 68
            +  +A +  + + PVAG+DE GRGA AGP+VVAA +L   +     G+ DSK ++   R
Sbjct: 16  TWAFQAALDRRGLGPVAGVDEAGRGACAGPLVVAAAVLRTGDAARFAGLTDSKLLTAAAR 75

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           + +++ +   A+  ++       +D   +H A ++ +  AV  L   P   L DG  +P 
Sbjct: 76  DRMHDLVLERALDHAVVVVPADEVDAIGVHVANVEGMRRAVARLGTHPGYVLTDGFPVP- 134

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            L      ++KGD ++  +AAAS++AKVTRDR+M   H++ P YGFD H GY TA H   
Sbjct: 135 GLTAPNAPLVKGDRVAACVAAASVLAKVTRDRIMAELHEELPVYGFDVHKGYGTAAHTAA 194

Query: 188 IKEKGPSCIHRLTFRPL 204
           + E GPS  HR ++  +
Sbjct: 195 LLEHGPSGQHRWSYANV 211


>gi|283953657|ref|ZP_06371188.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 414]
 gi|283794698|gb|EFC33436.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 414]
          Length = 198

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 68/197 (34%), Positives = 109/197 (55%), Gaps = 8/197 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F+ + ++ E ++  + GIDE GRGALAGP+++AA  L  N    G+ DSKK+S KKR
Sbjct: 9   KTLFDTKELLNEFDINLI-GIDEAGRGALAGPMMMAACKL--NKQLDGLCDSKKLSEKKR 65

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           EELYE I  ++   I + S + ID   +       +    ++ +      L DG +   +
Sbjct: 66  EELYEIIIKNSSYLILAFSSEQIDALGLSTCLKTGLKLIKKHFKTENNF-LYDGNT---N 121

Query: 129 LPCQ-AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           L        IK D+  L ++AASI+AKV++DR+M    K +P Y F+ +  Y T  H+++
Sbjct: 122 LGINGIKTQIKADASILQVSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKEL 181

Query: 188 IKEKGPSCIHRLTFRPL 204
           I + G   +HR +F+ L
Sbjct: 182 IAKFGICKLHRKSFKLL 198


>gi|303232810|ref|ZP_07319495.1| ribonuclease HII [Atopobium vaginae PB189-T1-4]
 gi|302481296|gb|EFL44371.1| ribonuclease HII [Atopobium vaginae PB189-T1-4]
          Length = 271

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 71/194 (36%), Positives = 106/194 (54%), Gaps = 5/194 (2%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           R  + L+  +       V G+DEVGRG LAGP+ V A++L+     +G+NDSK++S + R
Sbjct: 76  RAMYALQRSMAYGG--AVIGVDEVGRGPLAGPLSVGAVVLNDEPCIWGLNDSKQLSSRTR 133

Query: 69  EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
            EL  +I   A  +++       ID+  I  A  +A+  A+E + + P + LIDG   P 
Sbjct: 134 SELAARIRKEARAVAVVHIPPAVIDEKGISCALKEAMRTAIERIDIAPTAVLIDGN--PV 191

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
            +      ++KGD    +IAAASI+AKV RD  M     +YP Y F  + GY +++H   
Sbjct: 192 HVHPLEQTIVKGDCKIAAIAAASIVAKVERDAYMSSISDQYPQYHFAQNKGYGSSEHIHA 251

Query: 188 IKEKGPSCIHRLTF 201
           IK  G S IHR +F
Sbjct: 252 IKTYGLSAIHRKSF 265


>gi|310286901|ref|YP_003938159.1| Ribonuclease HII [Bifidobacterium bifidum S17]
 gi|311063802|ref|YP_003970527.1| ribonuclease HII RnhB [Bifidobacterium bifidum PRL2010]
 gi|309250837|gb|ADO52585.1| Ribonuclease HII [Bifidobacterium bifidum S17]
 gi|310866121|gb|ADP35490.1| RnhB Ribonuclease HII [Bifidobacterium bifidum PRL2010]
          Length = 233

 Score =  188 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 110/229 (48%), Gaps = 32/229 (13%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII-----LDPNNIPFGIND 59
           ++ E P  ++E  +  +    V G DEVGRGALAGPV+V A       L    +P G+ D
Sbjct: 2   AMIEHPTLDMERQLAAQGCDVVIGCDEVGRGALAGPVMVGAAAMWSRDLAAAQVPAGVAD 61

Query: 60  SKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR-- 116
           SK ++  +RE + +++ S  A  ++  AS+  ID+  I  A   A   A+ +++      
Sbjct: 62  SKLLTEHRREGIVDELRSWCAAYAVGQASNAEIDEWGISHALGIAALRALNDVERQLGMD 121

Query: 117 ---------SALIDGRSIP------------EDLPCQAFAVIKGDSISLSIAAASIIAKV 155
                      ++DG +                +P Q    +KGD    +++ A++IAKV
Sbjct: 122 GPAGSGRRVDVILDGPNDYITKTMNTFDAPALPIPVQVSCKVKGDRHCATVSCAAVIAKV 181

Query: 156 TRDRLMRIAHK---KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           TRD LM    +   +Y  YG+  + GY +A H+  I   G + +HR+T+
Sbjct: 182 TRDHLMVDIAQGNPRYAPYGWAHNKGYGSAAHRDAIARLGVTPLHRVTW 230


>gi|261838642|gb|ACX98408.1| ribonuclease HII [Helicobacter pylori 51]
          Length = 204

 Score =  188 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 63/187 (33%), Positives = 92/187 (49%), Gaps = 9/187 (4%)

Query: 28  GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS--AII 81
           GIDE GRG LAG + VA ++ +       +  G+ DSKK+S KKR  L +KI +      
Sbjct: 4   GIDEAGRGCLAGSLFVAGVVCNEKTALEFLSMGLKDSKKLSPKKRFFLEDKIKTHGEVKF 63

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139
            +   S   ID   +      AI   +EN + +     IDG +             +IKG
Sbjct: 64  WVVKKSANEIDSLGLGVCLKLAIQEILENGRSLANKIKIDGNTAFGLNKRYSNIETIIKG 123

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D     IA AS+IAK  +DR MR  H  + +YG+D + GY T +H + + + G +  HR 
Sbjct: 124 DEKIAQIAMASVIAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPFHRH 183

Query: 200 TFRPLRN 206
           +F  L+N
Sbjct: 184 SF-TLKN 189


>gi|157414331|ref|YP_001481587.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 81116]
 gi|172046982|sp|A8FJH3|RNH2_CAMJ8 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157385295|gb|ABV51610.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 81116]
 gi|315931297|gb|EFV10266.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 327]
          Length = 191

 Score =  188 bits (478), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 68/197 (34%), Positives = 109/197 (55%), Gaps = 8/197 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F+ + ++ E ++  + GIDE GRGALAGP+++AA  L  N    G+ DSKK+S KKR
Sbjct: 2   KTLFDTKELLNEFDINLI-GIDEAGRGALAGPMMMAACKL--NKKLDGLCDSKKLSEKKR 58

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           EELYE I  ++   I + S + ID   +       +    ++ +      L DG +   +
Sbjct: 59  EELYEIIIKNSNYLILAFSSEQIDALGLSTCLKTGLKLIKKHFKTENNF-LYDGNT---N 114

Query: 129 LPCQ-AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           L        IK D+  L ++AASI+AKV++DR+M    K +P Y F+ +  Y T  H+++
Sbjct: 115 LGINGIKTQIKADASILQVSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKEL 174

Query: 188 IKEKGPSCIHRLTFRPL 204
           I + G   +HR +F+ L
Sbjct: 175 IAKFGICKLHRKSFKLL 191


>gi|160947174|ref|ZP_02094341.1| hypothetical protein PEPMIC_01107 [Parvimonas micra ATCC 33270]
 gi|158446308|gb|EDP23303.1| hypothetical protein PEPMIC_01107 [Parvimonas micra ATCC 33270]
          Length = 210

 Score =  188 bits (478), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 77/196 (39%), Positives = 111/196 (56%), Gaps = 11/196 (5%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           ELE + ++ N+  + G+DEVGRG LAGPVV  AII+  ++   G+ DSKK+S KKR  LY
Sbjct: 6   ELENIYKKYNL--IIGVDEVGRGCLAGPVVSCAIIMKKDSKIEGVTDSKKLSKKKRLALY 63

Query: 73  EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALIDGRSI 125
           +KI    +   I    +  ID+ NI +A+  A+  A+ N++      V     + D   +
Sbjct: 64  DKILEECVGYGIGIVDNVKIDEINIKQASRFAMKIAISNIKDLDGNKVSGDFLITDAEKV 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
             D+P     +I GD +S  ++ ASIIAK  RD +     KKYP+Y F  +VGY T  H 
Sbjct: 124 DVDIP--QINLIHGDELSYVVSCASIIAKEYRDSMFVEYEKKYPNYNFIKNVGYGTKAHY 181

Query: 186 QVIKEKGPSCIHRLTF 201
           + I E G + IHR+TF
Sbjct: 182 KGIDEFGVTPIHRVTF 197


>gi|282862315|ref|ZP_06271377.1| Ribonuclease H [Streptomyces sp. ACTE]
 gi|282562654|gb|EFB68194.1| Ribonuclease H [Streptomyces sp. ACTE]
          Length = 236

 Score =  188 bits (478), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 76/205 (37%), Positives = 109/205 (53%), Gaps = 5/205 (2%)

Query: 8   ERPHFELEAMVRE-KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           E P   +E  +R       VAG+DEVGRGA AGPV V A +      P G+ DSK IS K
Sbjct: 4   EPPTHTVERSLRATSGAKTVAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLISPK 63

Query: 67  KREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R EL   + S      +  AS + ID   +  A   A   A++ L V P + ++DG+  
Sbjct: 64  RRAELAPVLESWVTAFGLGHASPEEIDDLGMTAALRLAAVRALDALPVRPDAVILDGKHD 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK---KYPDYGFDSHVGYPTA 182
               P +   VIKGD   +++AAAS+IAKV RD +M        +Y D+ F ++ GYP+ 
Sbjct: 124 YLGDPWKVRTVIKGDQSCIAVAAASVIAKVRRDTMMAELGADSDRYADFAFGANAGYPSP 183

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207
            H+  ++E GP+  HRL++  L  L
Sbjct: 184 VHRAALEEWGPTPHHRLSWSYLDAL 208


>gi|29828995|ref|NP_823629.1| ribonuclease HII [Streptomyces avermitilis MA-4680]
 gi|39932356|sp|Q82KF0|RNH2_STRAW RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|29606100|dbj|BAC70164.1| putative ribonuclease HII [Streptomyces avermitilis MA-4680]
          Length = 233

 Score =  188 bits (478), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 74/202 (36%), Positives = 112/202 (55%), Gaps = 2/202 (0%)

Query: 8   ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           E P   +E  +R       +AG+DEVGRGA AGPV V A I      P G+ DSK ++ K
Sbjct: 4   EPPTHTVERSLRATTGAKVIAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLLTVK 63

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R  L E++       ++  AS + ID   +  A   A   A+E L V P + ++DG+  
Sbjct: 64  RRTVLAEELRKWVTSYALGHASPEEIDALGMTAALRLAAVRALEALPVRPDAVILDGKHD 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
               P +   VIKGD   +++AAAS+IAKV RD++M     ++ D+GF ++ GYP+  H+
Sbjct: 124 YLGSPWKVRTVIKGDQSCVAVAAASVIAKVQRDKMMAELGIEHADFGFAANAGYPSPVHK 183

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
             + E+GP+  HRL++  L  L
Sbjct: 184 AALAERGPTPYHRLSWAYLDAL 205


>gi|256832223|ref|YP_003160950.1| Ribonuclease H [Jonesia denitrificans DSM 20603]
 gi|256685754|gb|ACV08647.1| Ribonuclease H [Jonesia denitrificans DSM 20603]
          Length = 303

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 67/218 (30%), Positives = 102/218 (46%), Gaps = 26/218 (11%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKR 68
               E  + ++    VAG+DEVGRGALAGPV V   ++DP     P G+ DSK++SH+ R
Sbjct: 72  DLTHERSLFDRGARLVAGVDEVGRGALAGPVAVGVCVVDPTTQLPPVGLTDSKELSHEAR 131

Query: 69  EELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVI---PRSALIDGRS 124
             L   I   A+ S +  A+ + ID+  I  A   A   A+  +        + L+DG  
Sbjct: 132 ALLVPMIQGWAVASAVGLATPEEIDECGIVGALRLAGQRALGEIMQRLGPVDTVLLDGSH 191

Query: 125 IPEDLPCQ--------------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIA 164
                P Q                        +K D    S+A ASI+AK  RD +MR  
Sbjct: 192 NWLSEPVQDLFDAVTSDQQTIDGYEEPRVVTRVKADLACASVAGASILAKEHRDAIMREL 251

Query: 165 HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
              +P YG+ ++ GY ++ H   +  +GP+  HR+++R
Sbjct: 252 DHDFPHYGWVTNKGYASSGHTYALTTRGPTPHHRMSWR 289


>gi|291436842|ref|ZP_06576232.1| ribonuclease HII [Streptomyces ghanaensis ATCC 14672]
 gi|291339737|gb|EFE66693.1| ribonuclease HII [Streptomyces ghanaensis ATCC 14672]
          Length = 233

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 75/202 (37%), Positives = 111/202 (54%), Gaps = 2/202 (0%)

Query: 8   ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           E P   +E  +R       +AG+DEVGRGA AGPV V A I      P G+ DSK ++ K
Sbjct: 4   EPPTHTVERSLRATTGAKVIAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLLTLK 63

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R EL E + S     ++  AS + ID   +  A   A   A+E L V P + ++DG+  
Sbjct: 64  RRTELAETLRSWVTSYALGHASPEEIDVLGMTAALRLAAVRALEALPVRPDAVILDGKHD 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
               P +   VIKGD   +++AAAS+IAKV RD++M      + D+GF  + GYP+  H+
Sbjct: 124 YLGTPWKVRTVIKGDQSCVAVAAASVIAKVQRDKMMAELGVDHADFGFADNAGYPSPVHR 183

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
             ++ +GP+  HRL++  L  L
Sbjct: 184 AALEVRGPTPHHRLSWAYLDAL 205


>gi|268680590|ref|YP_003305021.1| ribonuclease H [Sulfurospirillum deleyianum DSM 6946]
 gi|268618621|gb|ACZ12986.1| Ribonuclease H [Sulfurospirillum deleyianum DSM 6946]
          Length = 182

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 65/183 (35%), Positives = 99/183 (54%), Gaps = 7/183 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           + GIDE GRG LAGP+VVA  +L       G+ DSK++S K+RE L+E++ ++A   I  
Sbjct: 2   LCGIDEAGRGCLAGPLVVAGAVLKE--PVKGLADSKQLSEKQREILFERLQNAAEFKIVF 59

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
             H+ +D   +      AI     +        L+DG             ++K D+    
Sbjct: 60  CDHEMVDTKGLSACLKYAIETIKAHFCE--HEILMDGNCTFGVSGIS--TMVKADAKVAE 115

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           ++AASI+AKV+RDR M      YP+Y F+ H GY +A H ++I++ G   IHR +F+ L+
Sbjct: 116 VSAASILAKVSRDRYMCDIAPSYPEYAFEKHKGYGSALHVKMIQQFGYCDIHRKSFK-LK 174

Query: 206 NLS 208
            LS
Sbjct: 175 ALS 177


>gi|239928517|ref|ZP_04685470.1| ribonuclease HII [Streptomyces ghanaensis ATCC 14672]
          Length = 236

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 76/208 (36%), Positives = 114/208 (54%), Gaps = 3/208 (1%)

Query: 3   CNSIP-ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
             ++P E P   +E  +R       +AG+DEVGRGA AGPV V A I      P G+ DS
Sbjct: 1   MGAMPYEPPTHTVERSLRATTGAKVIAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDS 60

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
           K ++ K+R EL E + S     ++  AS + ID   +  A   A   A+E L V P + +
Sbjct: 61  KLLTLKRRTELAETLRSWVTSYALGHASPEEIDVLGMTAALRLAAVRALEALPVRPDAVI 120

Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
           +DG+      P +   VIKGD   +++AAAS+IAKV RD++M      + D+GF  + GY
Sbjct: 121 LDGKHDYLGTPWKVRTVIKGDQSCVAVAAASVIAKVQRDKMMAELGVDHADFGFADNAGY 180

Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           P+  H+  ++ +GP+  HRL++  L  L
Sbjct: 181 PSPVHRAALEVRGPTPHHRLSWAYLDAL 208


>gi|307720133|ref|YP_003891273.1| Ribonuclease H [Sulfurimonas autotrophica DSM 16294]
 gi|306978226|gb|ADN08261.1| Ribonuclease H [Sulfurimonas autotrophica DSM 16294]
          Length = 182

 Score =  187 bits (477), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 71/187 (37%), Positives = 100/187 (53%), Gaps = 9/187 (4%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82
           M  + GIDE GRG LAG +V+A  IL  +    G+NDSKK++ KKRE LYE I  +A   
Sbjct: 1   MGVLCGIDEAGRGPLAGDLVMAGCIL--HVSVDGLNDSKKLTAKKREALYELIVENASYH 58

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA-VIKGDS 141
           I   S   ID + I       +   + NL+      L DG    +    +  A +++ D 
Sbjct: 59  IVKFSAHDIDNNGISACLKKGLIDILNNLK--ADKYLFDGN---QTYGVKNLATMVQADR 113

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
               ++AASI+AKVT D  +  A KKYP+Y F+ H GY T  H  +IK+ G   IHR T+
Sbjct: 114 KIAEVSAASILAKVTHDVDILEAAKKYPEYQFEKHKGYGTKLHVAMIKKYGYCEIHRKTY 173

Query: 202 RPLRNLS 208
           + ++ L 
Sbjct: 174 K-IKALE 179


>gi|224282458|ref|ZP_03645780.1| ribonuclease HII [Bifidobacterium bifidum NCIMB 41171]
 gi|313139607|ref|ZP_07801800.1| ribonuclease HII [Bifidobacterium bifidum NCIMB 41171]
 gi|313132117|gb|EFR49734.1| ribonuclease HII [Bifidobacterium bifidum NCIMB 41171]
          Length = 233

 Score =  187 bits (477), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 110/229 (48%), Gaps = 32/229 (13%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII-----LDPNNIPFGIND 59
           ++ E P  ++E  +  +    V G DEVGRGALAGPV+V A       L    +P G+ D
Sbjct: 2   AMIEHPTLDMERQLAAQGCDVVIGCDEVGRGALAGPVMVGAAAMWSRDLAAAQVPAGVAD 61

Query: 60  SKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR-- 116
           SK ++  +RE + +++ S  A  ++  AS+  ID+  I  A   A   A+ +++      
Sbjct: 62  SKLLTEHRREGIVDELRSWCAAYAVGQASNAEIDEWGISHALGIAALRALNDVERQLGMD 121

Query: 117 ---------SALIDGRSIP------------EDLPCQAFAVIKGDSISLSIAAASIIAKV 155
                      ++DG +                +P Q    +KGD    +++ A++IAKV
Sbjct: 122 GPAGSGRRVDVILDGPNDYITKTMNTFDAPALPIPVQVSCKVKGDRHCAAVSCAAVIAKV 181

Query: 156 TRDRLMRIAHK---KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           TRD LM    +   +Y  YG+  + GY +A H+  I   G + +HR+T+
Sbjct: 182 TRDHLMVDIAQGNPRYAPYGWAHNKGYGSAAHRDAIARLGVTPLHRVTW 230


>gi|253315602|ref|ZP_04838815.1| ribonuclease HII [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
          Length = 232

 Score =  187 bits (477), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 104/169 (61%), Gaps = 4/169 (2%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           E  +FE E +++E     + GIDEVGRG LAGPVV  A IL+ N+   G++DSKK+   K
Sbjct: 57  EMTYFENE-ILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPITK 115

Query: 68  REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           R EL E + +     +   A+ + ID+ NI+KAT  A+  A++ L V P   LID  ++ 
Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
             LP    ++IKGD+ S+SIAAASI+AKV RD  M    K YP+YGF+ 
Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEK 222


>gi|320008134|gb|ADW02984.1| Ribonuclease H [Streptomyces flavogriseus ATCC 33331]
          Length = 236

 Score =  187 bits (477), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 74/205 (36%), Positives = 108/205 (52%), Gaps = 5/205 (2%)

Query: 8   ERPHFELEAMVRE-KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           E P   +E  +R       VAG+DEVGRGA AGPV V A +      P G+ DSK ++ K
Sbjct: 4   EPPTHTVERSLRATSGARTVAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLLTPK 63

Query: 67  KREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R EL   +        +  AS Q ID   +  A   A   A++ L V P + ++DG+  
Sbjct: 64  RRAELAPTLEKWVTAYGLGHASPQEIDDVGMTAALRLAATRALDMLPVRPDAVILDGKHD 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK---KYPDYGFDSHVGYPTA 182
               P     VIKGD   +++AAAS+IAKV RD +M        +Y D+ F ++ GYP+ 
Sbjct: 124 YLGPPWNVRTVIKGDQSCIAVAAASVIAKVHRDTMMAELGAESGQYADFAFGANAGYPSP 183

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207
            H+  ++E+GP+  HRL++  L  L
Sbjct: 184 VHRAALEERGPTPHHRLSWAYLDAL 208


>gi|229815421|ref|ZP_04445753.1| hypothetical protein COLINT_02469 [Collinsella intestinalis DSM
           13280]
 gi|229808954|gb|EEP44724.1| hypothetical protein COLINT_02469 [Collinsella intestinalis DSM
           13280]
          Length = 262

 Score =  187 bits (477), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 95/169 (56%), Gaps = 3/169 (1%)

Query: 34  RGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSASHQYID 92
           RG++AGP+ V A+ L      +GINDSK+++  KRE L  +I   A  + I   +   ID
Sbjct: 85  RGSVAGPLTVCAVSLPSEPRIWGINDSKQLTPAKREMLAVRIAEVATAVGICHIAPSRID 144

Query: 93  KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASII 152
           +  + +A  +A+  AV +  + P   L+DG   P         V+KGD+    IAAASI+
Sbjct: 145 EIGMARALREAVAGAVADTGLEPDCVLMDGN--PLGAVPNERDVVKGDAKVACIAAASIV 202

Query: 153 AKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           AKVTRD LM     +YP+Y      GY +A+H Q IK+ G S +HR++F
Sbjct: 203 AKVTRDELMVELDTEYPEYHLAQSKGYASAEHIQAIKDHGLSPVHRVSF 251


>gi|315587212|gb|ADU41593.1| ribonuclease H [Helicobacter pylori 35A]
          Length = 204

 Score =  187 bits (477), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 62/187 (33%), Positives = 92/187 (49%), Gaps = 9/187 (4%)

Query: 28  GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII-- 81
           GIDE GRG LAG + VA ++         +  G+ DSKK+S KKR  L  KI +   +  
Sbjct: 4   GIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEGKIKTHGEVEF 63

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139
            +   S   ID+  +      AI   +EN + +     IDG +             +IKG
Sbjct: 64  WVVKKSANEIDRLGLGACLKLAIQEILENGRSLTNGIKIDGNTAFGLNKRYSNIQTIIKG 123

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           D     IA AS++AK  +DR MR  H  + +YG+D + GY T +H + + + G +  HR 
Sbjct: 124 DEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPFHRH 183

Query: 200 TFRPLRN 206
           +F  L+N
Sbjct: 184 SF-TLKN 189


>gi|305432558|ref|ZP_07401719.1| ribonuclease HII [Campylobacter coli JV20]
 gi|304444269|gb|EFM36921.1| ribonuclease HII [Campylobacter coli JV20]
          Length = 202

 Score =  187 bits (477), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 63/179 (35%), Positives = 99/179 (55%), Gaps = 5/179 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           + GIDE GRGALAGP+++AA  L  +    G+ DSKK+S K+REELYE I  ++   I +
Sbjct: 29  LIGIDEAGRGALAGPMMMAACKLHKD--LEGLCDSKKLSEKRREELYEIIIKNSNYLILA 86

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + ID+  +    L      ++       + L DG +       +    IK D+    
Sbjct: 87  FSSEKIDEIGLSAC-LKMGLTLIKKHFKTENNFLYDGNTNLGISGIKTQ--IKADANIKQ 143

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           ++AASI+AKV++DR+M    K +P Y F+ +  Y T  H+++I + G   +HR +F+ L
Sbjct: 144 VSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKELIAKFGICKLHRKSFKLL 202


>gi|302554616|ref|ZP_07306958.1| ribonuclease HII [Streptomyces viridochromogenes DSM 40736]
 gi|302472234|gb|EFL35327.1| ribonuclease HII [Streptomyces viridochromogenes DSM 40736]
          Length = 233

 Score =  187 bits (477), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 75/202 (37%), Positives = 112/202 (55%), Gaps = 2/202 (0%)

Query: 8   ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           E P   +E  +R       VAG+DEVGRGA AGPV V A I      P G+ DSK ++ K
Sbjct: 4   EPPTHTVERSLRATTGAKIVAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLLTIK 63

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R EL E + +     ++  AS + ID+  +  A   A   A++ L V P + ++DG+  
Sbjct: 64  RRTELAEVLRTWVTSFALGHASPEEIDELGMTAALRLAACRALDALPVRPDAVILDGKHD 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
               P +   VIKGD   +++AAAS+IAKV RD++M      + D+GF  + GYP+  H+
Sbjct: 124 YLGAPWRVRTVIKGDQSCVAVAAASVIAKVQRDKMMAELGIDHADFGFADNAGYPSPVHK 183

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
             + E+GP+  HRL++  L  L
Sbjct: 184 AALAERGPTPYHRLSWAYLDAL 205


>gi|37521076|ref|NP_924453.1| ribonuclease H [Gloeobacter violaceus PCC 7421]
 gi|35212072|dbj|BAC89448.1| ribonuclease H [Gloeobacter violaceus PCC 7421]
          Length = 198

 Score =  187 bits (476), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 72/187 (38%), Positives = 106/187 (56%), Gaps = 18/187 (9%)

Query: 29  IDEVGRGALAGPVVVAAII------LDPNNIPF---GINDSKKISHKKREELYEKITSSA 79
           +DEVGRGALAG       +      L P+       GI DSK +   +RE L+E+I + A
Sbjct: 1   MDEVGRGALAG------CVVAAAVVLPPDIPLAALAGITDSKLLDRPRREALHERILALA 54

Query: 80  -IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
             + I SAS   ID+ NI +AT  A+  A+  +  +    L+DG  + E L     A++ 
Sbjct: 55  SAVGIGSASVGEIDRLNILRATALAMGRALHRVAPV-EHVLVDGLPVAE-LGITQTAIVG 112

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD  SLSIAAASI+AKVTRDR M    +++  +G+ ++ GY TA H++ +   G + +HR
Sbjct: 113 GDRTSLSIAAASIVAKVTRDRWMERLDRRFAGFGWATNAGYGTAFHREALARLGVTPLHR 172

Query: 199 LTFRPLR 205
            +F P+R
Sbjct: 173 RSFAPVR 179


>gi|207092749|ref|ZP_03240536.1| ribonuclease HII [Helicobacter pylori HPKX_438_AG0C1]
          Length = 204

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/188 (34%), Positives = 94/188 (50%), Gaps = 11/188 (5%)

Query: 28  GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS--AII 81
           GIDE GRG LAG + VA +  D       +  G+ DSKK+S KKR  L +KI +      
Sbjct: 4   GIDEAGRGCLAGSLFVAGVACDEKTALEFLKMGLKDSKKLSQKKRFFLEDKIKTHGEVKF 63

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138
            +   S + ID   +      AI   +EN   +     IDG +   + +  P     +IK
Sbjct: 64  FVVKKSAEAIDSLGLGACLRLAIEEILENGCSLANEIKIDGNTAFGLNKRYPHIQ-TIIK 122

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD     IA AS++AK  +DR MR  H  + +YG+D + GY T +H + I + G +  HR
Sbjct: 123 GDETIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHR 182

Query: 199 LTFRPLRN 206
            +F  L+N
Sbjct: 183 HSF-TLKN 189


>gi|311113471|ref|YP_003984693.1| ribonuclease HII [Rothia dentocariosa ATCC 17931]
 gi|310944965|gb|ADP41259.1| ribonuclease HII [Rothia dentocariosa ATCC 17931]
          Length = 264

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 101/232 (43%), Gaps = 40/232 (17%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKR 68
           + E E  +       +AG+DEVGRGALAGPV V   +LD  N  I  G+ DSK ++ K+R
Sbjct: 5   NLEHEQKLFTAGYRLIAGLDEVGRGALAGPVSVGVAVLDQQNQQILEGLTDSKALTPKRR 64

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI---PRSALIDGRSI 125
           E L  +I      +I   +   ID   +  A   A   A+ +L      P + L+DG+  
Sbjct: 65  EALIPRIQKWCSYAIGHTTPAEIDVLGMTYALRLAAQRALADLAHRGLYPEAVLLDGKHD 124

Query: 126 -----------------------------------PEDLPCQAFAVIKGDSISLSIAAAS 150
                                               +        +IKGD    SIAAAS
Sbjct: 125 WLSPQPANLLDSIDPVYRRYEELLHRIWNGANSAAEKGWSGPVTTIIKGDYQCASIAAAS 184

Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           ++AKV RD  M     + P YG+  + GY +  H+Q I E GPS  HRL++ 
Sbjct: 185 VVAKVDRDAFMESLSAENPHYGWAKNKGYGSVAHRQAISEYGPSIYHRLSWS 236


>gi|261337969|ref|ZP_05965853.1| ribonuclease HII [Bifidobacterium gallicum DSM 20093]
 gi|270277466|gb|EFA23320.1| ribonuclease HII [Bifidobacterium gallicum DSM 20093]
          Length = 243

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 75/236 (31%), Positives = 115/236 (48%), Gaps = 43/236 (18%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII----LDPNNIPFGINDSKKIS 64
           P  + E  + ++    + G DEVGRGALAGPV+V AA I    L   ++P  + DSK ++
Sbjct: 6   PTLDREQELADQGFDLIVGFDEVGRGALAGPVMVGAAAIWAADLPQLHVPDHVADSKMLT 65

Query: 65  HKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQV---------- 113
            ++RE +YE + +  A  ++  AS+Q ID   I  A   A   A+  L+           
Sbjct: 66  ERRREAIYEDLEAWSAAWAVGQASNQEIDDWGISHALGIAALRALAQLEHHLGIGIASNQ 125

Query: 114 ------------IPRS-ALIDGRSIP----------EDLPCQAFAV--IKGDSISLSIAA 148
                        PR  A++DG               D+P  A  V  +KGD    ++A+
Sbjct: 126 TSISSEATTTLRTPRIGAILDGPHDYITKALGTFEAPDVPINAHVVTQVKGDQHCATVAS 185

Query: 149 ASIIAKVTRDRLMRIAHKK--YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           A++IAKVTRD LM    ++  Y  YG+ S+ GY    H+Q I + G   +HRL+++
Sbjct: 186 AAVIAKVTRDHLMIELAERPEYAPYGWASNKGYGAKAHRQAIVDHGLCDLHRLSWK 241


>gi|108563693|ref|YP_628009.1| ribonuclease HII [Helicobacter pylori HPAG1]
 gi|123373683|sp|Q1CRT7|RNH2_HELPH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|107837466|gb|ABF85335.1| ribonuclease HII [Helicobacter pylori HPAG1]
          Length = 204

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 11/188 (5%)

Query: 28  GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAIIS- 82
           GIDE GRG LAG + VA +          +  G+ DSKK+S KKR  L +KI +   +  
Sbjct: 4   GIDEAGRGCLAGSLFVAGVACSEKTALEFLKMGLKDSKKLSQKKRFFLEDKIKTHGEVGF 63

Query: 83  -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138
            +   S + ID   +      AI   +EN   +     IDG +   + +  P     +IK
Sbjct: 64  FVVKKSAEAIDSLGLGACLKLAIEEILENGCSLANEIKIDGNTAFGLNKRYP-NIQTIIK 122

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD     IA AS++AK  +DR M   H  + +YG+D + GY T +H + I + G +  HR
Sbjct: 123 GDETIAQIAMASVLAKAAKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHR 182

Query: 199 LTFRPLRN 206
            +F  L+N
Sbjct: 183 HSF-TLKN 189


>gi|260907251|ref|ZP_05915573.1| ribonuclease HII [Brevibacterium linens BL2]
          Length = 243

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 105/224 (46%), Gaps = 32/224 (14%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISH 65
               E+ +  +    V G+DEVGRGALAGPV V   + D        +P GI+DSK++S 
Sbjct: 8   DLSYESALLAEGYEFVIGVDEVGRGALAGPVSVGVALFDLREVTAAEVPAGIHDSKQLSA 67

Query: 66  KKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIP--------- 115
             R+   +++   A   S+ S +   +D+  +  A   A   A+  + +           
Sbjct: 68  LSRQTATDRVNGWARATSVGSTTPNELDELGMTMALNLAGRRALSEMLLECVGSTDFPPS 127

Query: 116 RSALIDGRSI----PEDLPC-------------QAFAVIKGDSISLSIAAASIIAKVTRD 158
              L+DG+      P  L C             Q   VIKGD     IAAASI+AKV RD
Sbjct: 128 TMILLDGKHDWLSAPLTLDCLGIFGDAADLQLPQVRTVIKGDGSVPVIAAASIVAKVQRD 187

Query: 159 RLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             M    K  P YG+ S+VGY T KH++ I + GPS  HR +FR
Sbjct: 188 EEMIALAKANPQYGWQSNVGYGTMKHRRGIADFGPSIHHRRSFR 231


>gi|222823127|ref|YP_002574700.1| ribonuclease HII [Campylobacter lari RM2100]
 gi|222538348|gb|ACM63449.1| ribonuclease HII [Campylobacter lari RM2100]
          Length = 183

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 68/178 (38%), Positives = 95/178 (53%), Gaps = 6/178 (3%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83
             + G+DE GRGALAG + + A  L  N    G+ DSKK+S KKREELYE+I S++   I
Sbjct: 1   MALVGVDEAGRGALAGDMHIGACKLLKN--IDGLADSKKLSAKKREELYEQILSNSNFLI 58

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
            + S   ID   + +    A+    ++        L DG      L  +   ++K D   
Sbjct: 59  LAFSPLQIDTLGLSQCLQLALKIIKKHFSQ--DEILYDGNLNYGILDIK--TMVKADMKV 114

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             ++AASI+AKV+RD+ MR   K Y +Y FD H GY T  H + IK  G S +HR +F
Sbjct: 115 QEVSAASILAKVSRDQKMRYFSKIYSNYDFDKHKGYGTKAHIEKIKAFGYSPLHRKSF 172


>gi|86153986|ref|ZP_01072188.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88597652|ref|ZP_01100885.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 84-25]
 gi|85842524|gb|EAQ59737.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88189956|gb|EAQ93932.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 84-25]
 gi|307746973|gb|ADN90243.1| Ribonuclease HII [Campylobacter jejuni subsp. jejuni M1]
 gi|315929937|gb|EFV09094.1| Ribonuclease HII [Campylobacter jejuni subsp. jejuni 305]
          Length = 191

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 68/197 (34%), Positives = 108/197 (54%), Gaps = 8/197 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F+ + ++ E ++  + GIDE GRGALAGP+++AA  L  N    G+ DSKK+S KKR
Sbjct: 2   KTLFDTKELLNEFDINLI-GIDEAGRGALAGPMMMAACKL--NKQLDGLCDSKKLSEKKR 58

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           EELYE I  ++   I + S + ID   +       +    ++ +      L DG +   +
Sbjct: 59  EELYEIIIKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFKTENNF-LYDGNT---N 114

Query: 129 LPCQ-AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           L        IK D+  L ++AASI+AKV++DR+M    K +P Y F+ +  Y T  H++ 
Sbjct: 115 LGINGIKTQIKADASILQVSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKEF 174

Query: 188 IKEKGPSCIHRLTFRPL 204
           I + G   +HR +F+ L
Sbjct: 175 IAKFGICKLHRKSFKLL 191


>gi|189911146|ref|YP_001962701.1| ribonuclease H [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167775822|gb|ABZ94123.1| Ribonuclease H [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
          Length = 246

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 96/206 (46%), Gaps = 37/206 (17%)

Query: 30  DEVGRGALAGPVVVAAIILDP--------NNIPFGINDSKKISHKKREELYEKITSSA-I 80
           DE GRG LAGPV V  +              I   + DSKKI   KR EL  +I   A  
Sbjct: 28  DEAGRGTLAGPVSVGCVSFSSQTLEKIQSGTILKNLRDSKKIPEPKRFELRTEILQYAAY 87

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA---------------------- 118
             +S  S ++ID+ NI++A    I  A   L V PR                        
Sbjct: 88  WHVSFVSAKFIDRFNINQAIFYGISRA---LPVNPRQVTGHLHKTGIPLGTQTKETLAPF 144

Query: 119 -LIDGR-SIPEDLPCQAF-AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
             +DG   +    P + + ++ KGD +  SI+AASI+AK  RD  M     KYP YGF  
Sbjct: 145 LFVDGNYKLKIHKPIEGYLSIPKGDDLVPSISAASILAKTYRDEYMEKMDAKYPGYGFAK 204

Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTF 201
           H GY T +H++ +++ G S IHRL+F
Sbjct: 205 HKGYGTEEHREALRKLGISPIHRLSF 230


>gi|116072124|ref|ZP_01469392.1| Ribonuclease H [Synechococcus sp. BL107]
 gi|116065747|gb|EAU71505.1| Ribonuclease H [Synechococcus sp. BL107]
          Length = 199

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 74/187 (39%), Positives = 104/187 (55%), Gaps = 7/187 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII 81
           VAG+DEVGRG L GPV  AA++LD          G+ DSKK+S K+R  L   I    + 
Sbjct: 13  VAGVDEVGRGCLFGPVFAAAVVLDQVAEQRLWQAGLTDSKKLSAKRRGSLVPLIEQHCLT 72

Query: 82  S-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
           S +  AS   ID   I +AT  A+  A++ L+  P   L+DG             ++ GD
Sbjct: 73  SGLGQASAHEIDAVGIRRATERAMLRALQKLEHSPNVVLVDGNLPLRLWSGPQKTLVGGD 132

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S S +IAAAS++AK +RD L+R    ++P YG + H GY TA H++ +   GP+ +HR +
Sbjct: 133 SRSAAIAAASVLAKESRDALIRRLSNRFPGYGLERHAGYGTALHREALLALGPTSMHRRS 192

Query: 201 FRPLRNL 207
           F  LR L
Sbjct: 193 F--LRRL 197


>gi|317178386|dbj|BAJ56174.1| ribonuclease HII [Helicobacter pylori F30]
          Length = 204

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 61/189 (32%), Positives = 91/189 (48%), Gaps = 9/189 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSA-- 79
           + GIDE GRG LAG + VA ++         +  G+ DSKK+S KKR  L +KI +    
Sbjct: 2   ILGIDEAGRGCLAGSLFVAGVVCGEKTASEFLSMGLKDSKKLSPKKRFFLEDKIKTHGEM 61

Query: 80  IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVI 137
              +   S   ID   +      AI   +EN + +     IDG +             +I
Sbjct: 62  KFWVVKKSANEIDGLGLGACLKLAIQEILENGRSLANKIKIDGNTAFGLNKRYSNIETII 121

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
           KGD     IA AS++AK  +DR M   H  + +YG+D + GY T +H + + + G +  H
Sbjct: 122 KGDEKIAQIAMASVLAKAFKDREMLKLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPFH 181

Query: 198 RLTFRPLRN 206
           R +F  L+N
Sbjct: 182 RHSF-TLKN 189


>gi|210633137|ref|ZP_03297704.1| hypothetical protein COLSTE_01617 [Collinsella stercoris DSM 13279]
 gi|210159291|gb|EEA90262.1| hypothetical protein COLSTE_01617 [Collinsella stercoris DSM 13279]
          Length = 262

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 67/169 (39%), Positives = 95/169 (56%), Gaps = 3/169 (1%)

Query: 34  RGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSASHQYID 92
           RG++AGP+ V A+ L      +GINDSK++S  KRE L  +I   A  + I     + ID
Sbjct: 85  RGSVAGPLTVCAVCLPDEPRLWGINDSKQLSPAKREILAVRIAECARAVGICHIPPERID 144

Query: 93  KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASII 152
           +  + +A  +A+  AV +  + P   L+DG   P         V+KGD+    IAAASI+
Sbjct: 145 EIGMARALREAVAGAVADTGLQPDCVLMDGN--PLGAVPHERDVVKGDATVACIAAASIV 202

Query: 153 AKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           AKVTRD LM     +YP Y      GY +A+H Q I+E+G S IHR++F
Sbjct: 203 AKVTRDELMVEYDAEYPGYHLAQSKGYASAEHIQAIRERGLSPIHRVSF 251


>gi|153951148|ref|YP_001397283.1| ribonuclease HII [Campylobacter jejuni subsp. doylei 269.97]
 gi|166225179|sp|A7H1A3|RNH2_CAMJD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|152938594|gb|ABS43335.1| ribonuclease HII [Campylobacter jejuni subsp. doylei 269.97]
          Length = 191

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/197 (34%), Positives = 109/197 (55%), Gaps = 8/197 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F+ + ++ E ++  + GIDE GRGALAGP+++AA  L  N    G+ DSKK+S KKR
Sbjct: 2   KTLFDTKELLNEFDINLI-GIDEAGRGALAGPMMMAACKL--NKKLDGLCDSKKLSEKKR 58

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           EELYE I  ++   I + S + ID   +       +    ++ +      L DG +   +
Sbjct: 59  EELYEIIIKNSNYLILAFSSEQIDTLGLSTCLKTGLKLIKKHFKAENNF-LYDGNT---N 114

Query: 129 LPCQ-AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           L        IK D+  L ++AASI+AKV++D++M    K +P Y F+ +  Y T  H++V
Sbjct: 115 LGINGIKTQIKADTSILQVSAASILAKVSKDKVMNFLAKDFPCYEFEKNKAYGTKAHKEV 174

Query: 188 IKEKGPSCIHRLTFRPL 204
           I + G   +HR +F+ L
Sbjct: 175 IAKFGICKLHRKSFKLL 191


>gi|220925905|ref|YP_002501207.1| ribonuclease HII/HIII [Methylobacterium nodulans ORS 2060]
 gi|219950512|gb|ACL60904.1| ribonuclease HII/HIII [Methylobacterium nodulans ORS 2060]
          Length = 211

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 75/184 (40%), Positives = 108/184 (58%), Gaps = 5/184 (2%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS 78
              + G DEVGRGAL GPV+VAA+  DP  +P      ++DSK++    R  L  ++   
Sbjct: 13  YPVLIGCDEVGRGALCGPVIVAAVHFDPAALPPDLLEALDDSKRLDAATRRRLALRLRDC 72

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           A  + + AS   ID+ NI  ATLDA+  +V  L +   S  +DGR +P  L  +  AVI 
Sbjct: 73  AAFAYAGASRALIDRINIRAATLDAMARSVRRLGI-AGSVAVDGRDLPPGLDGRVQAVIG 131

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           G+ +   IAAASI+AKV RD LM +  +++P YG++ + GY TA H+  +  +GPS  HR
Sbjct: 132 GERLVPQIAAASILAKVLRDHLMTVLARRHPAYGWERNAGYGTAAHRAAMLRQGPSPHHR 191

Query: 199 LTFR 202
            +FR
Sbjct: 192 RSFR 195


>gi|283852127|ref|ZP_06369401.1| Ribonuclease H [Desulfovibrio sp. FW1012B]
 gi|283572517|gb|EFC20503.1| Ribonuclease H [Desulfovibrio sp. FW1012B]
          Length = 211

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 77/188 (40%), Positives = 106/188 (56%), Gaps = 8/188 (4%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            V GIDE GRG LAGPVV AA++L       G+ DSKK+S  KR+ L   I   A+   +
Sbjct: 11  LVVGIDEAGRGCLAGPVVAAAVVLPEACQLPGLTDSKKLSATKRDRLAPAIKVQAVAWGL 70

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIP------EDLPCQAFAV 136
             A    +D+ NI +AT  A+  AV  ++  P    IDG + IP       D      A+
Sbjct: 71  GVAWPAEVDRINILQATFAAMARAVRAMRAAPTVLRIDGDKRIPAAYLNFLDEAPVQEAI 130

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           I GD    +I+AASI+AK +RDR+M +  +++P YGF+ H GY  A H   +++ GP  I
Sbjct: 131 IGGDLTVPAISAASILAKTSRDRMMTVFARQFPGYGFEGHKGYGVAAHLAALRQLGPCRI 190

Query: 197 HRLTFRPL 204
           HRLTFR +
Sbjct: 191 HRLTFRGV 198


>gi|283956188|ref|ZP_06373673.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792342|gb|EFC31126.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 1336]
          Length = 191

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/197 (34%), Positives = 109/197 (55%), Gaps = 8/197 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F+ + ++ E ++  + GIDE GRGALAGP+++AA  L  N    G+ DSKK+S KKR
Sbjct: 2   KTLFDTKELLNEFDINLI-GIDEAGRGALAGPMMMAACKL--NKKLDGLCDSKKLSEKKR 58

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           EELYE I  ++   I + S + ID   +       +    ++ +      L DG +   +
Sbjct: 59  EELYEIIIKNSNYLILAFSSEQIDALGLSTCLKTGLKLIKKHFKTENNF-LYDGNT---N 114

Query: 129 LPCQ-AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           L        IK D+  L ++AASI+AKV++DR+M    K +P Y F+ +  Y T  H+++
Sbjct: 115 LGINGIKTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPYYEFEKNKAYGTKAHKKL 174

Query: 188 IKEKGPSCIHRLTFRPL 204
           I + G   +HR +F+ L
Sbjct: 175 IAKFGICKLHRKSFKLL 191


>gi|57504609|ref|ZP_00370721.1| ribonuclease HII [Campylobacter coli RM2228]
 gi|57019504|gb|EAL56198.1| ribonuclease HII [Campylobacter coli RM2228]
          Length = 191

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 63/179 (35%), Positives = 98/179 (54%), Gaps = 5/179 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85
           + GIDE GRGALAGP+++AA  L  +    G+ DSKK+S K+REELYE I   +   I +
Sbjct: 18  LIGIDEAGRGALAGPMMMAACKLHKD--LEGLCDSKKLSEKRREELYEIILLHSDYLILA 75

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S + ID+  +    L      ++       + L DG +       +    IK D+    
Sbjct: 76  FSSEKIDEIGLSAC-LKMGLTLIKKHFKTENNFLYDGNTNLGISGIKTQ--IKADANIKQ 132

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           ++AASI+AKV++DR+M    K +P Y F+ +  Y T  H+++I + G   +HR +F+ L
Sbjct: 133 VSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKELIAKFGICKLHRKSFKLL 191


>gi|254431100|ref|ZP_05044803.1| ribonuclease HII [Cyanobium sp. PCC 7001]
 gi|197625553|gb|EDY38112.1| ribonuclease HII [Cyanobium sp. PCC 7001]
          Length = 201

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 71/192 (36%), Positives = 104/192 (54%), Gaps = 5/192 (2%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE 70
           E     +N    AG+DEVGRG L GPV   A++L           G+ DSKK+S ++RE 
Sbjct: 3   EDPWFGRNPACCAGVDEVGRGCLFGPVFAGAVVLGAEAAAALTAQGLTDSKKLSARRREA 62

Query: 71  LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
           L   I  +A   ++  AS   ID   I +AT  A+  A+  L   P   L+DG       
Sbjct: 63  LLPLIREAAEAWALGQASAAEIDGFGIRQATERAMQRALAKLPQPPALLLVDGVLPLRGW 122

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           P +   +++GDS + +IAAAS++AK  RD+LMR    ++P YG + H GY TA+H+  + 
Sbjct: 123 PGEQATLVRGDSRNAAIAAASVLAKQARDQLMRTLADRFPGYGLERHAGYGTAQHRAALL 182

Query: 190 EKGPSCIHRLTF 201
             GP+ +HR +F
Sbjct: 183 SLGPTALHRRSF 194


>gi|300813510|ref|ZP_07093850.1| ribonuclease HII [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300512378|gb|EFK39538.1| ribonuclease HII [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 168

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 71/170 (41%), Positives = 98/170 (57%), Gaps = 9/170 (5%)

Query: 35  GALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDK 93
           G+L G V+  AII+  ++   G+NDSKK++ KKR+ELY KI   ++ + I  A  + IDK
Sbjct: 1   GSLFGDVLSCAIIMKEDSNIEGVNDSKKLTAKKRKELYNKILKDSLAVGIGRADAKTIDK 60

Query: 94  HNIHKATLDAIYHAVENLQ------VIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147
            NI  AT  ++  A+ENL+      V+P   LID  +I   +     ++IKGD    SIA
Sbjct: 61  LNIKMATHLSMVRAIENLRDSQGNLVVPDLVLIDAENIETTIF--QHSIIKGDENCYSIA 118

Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
            ASIIAKV RD L       YP YG + H GY T  H++ +K  GPS +H
Sbjct: 119 CASIIAKVYRDSLCDKWATIYPGYGIEKHKGYGTKFHREALKAYGPSPMH 168


>gi|300869375|ref|ZP_07113962.1| Ribonuclease HII [Oscillatoria sp. PCC 6506]
 gi|300332602|emb|CBN59160.1| Ribonuclease HII [Oscillatoria sp. PCC 6506]
          Length = 178

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/178 (38%), Positives = 94/178 (52%), Gaps = 12/178 (6%)

Query: 41  VVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHN 95
           +V AA IL P  +      G+ DSK++S   R  L  KI + A+   I  AS + ID+ N
Sbjct: 1   MVAAACILPPEALEELTALGVRDSKQLSPAARSRLAVKIQAMAVDCQIGVASVREIDRIN 60

Query: 96  IHKATLDAIYHAVENLQVIPRSALIDGR-SIPE------DLPCQAFAVIKGDSISLSIAA 148
           I +A+L A+  A+  L  +P   LIDG   IP         P     +I+GD  SL IAA
Sbjct: 61  ILQASLLAMKRAILKLNTLPELCLIDGNQRIPNLVVPKAGYPYAQQTMIQGDRRSLVIAA 120

Query: 149 ASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           ASI+AKV RD L+     K+P+Y   ++ GY T KH+  ++  G S  HR +F P R 
Sbjct: 121 ASIVAKVWRDELIVRMAVKFPEYDLTNNKGYGTPKHRLGLERYGVSPFHRTSFSPCRK 178


>gi|332701663|ref|ZP_08421751.1| Ribonuclease H [Desulfovibrio africanus str. Walvis Bay]
 gi|332551812|gb|EGJ48856.1| Ribonuclease H [Desulfovibrio africanus str. Walvis Bay]
          Length = 211

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 71/203 (34%), Positives = 99/203 (48%), Gaps = 38/203 (18%)

Query: 24  WPVAGIDEVGRGA-----------------LAGPVVVAAIILDPNNIPFGINDSKKISHK 66
             VAG+DE GRG                  L G                 + DSK +S  
Sbjct: 11  GRVAGVDEAGRGCLAGPVVAAAVVLPAYVKLPG-----------------LADSKLLSPA 53

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS- 124
           +R  L   I + A+  ++  +    ID+ N+ +ATL A+  AV  L++ P   L+DG   
Sbjct: 54  ERARLEPLIKTRALAWAVGVSWPPEIDERNVLRATLLAMSRAVRALKLSPDELLVDGNQC 113

Query: 125 IPEDL--PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
           IPE L       A++ GD +   I+AAS++AK  RDRLM    + YP YGF  H GY T 
Sbjct: 114 IPEGLVGFIPQRAIVDGDRLVRCISAASVLAKTFRDRLMGKLERLYPGYGFARHKGYGTR 173

Query: 183 KHQQVIKEKGPSCIHRLTFRPLR 205
           +H Q + E GPS +HRLTFR ++
Sbjct: 174 EHLQALVELGPSRMHRLTFRGVK 196


>gi|57236923|ref|YP_178038.1| ribonuclease HII [Campylobacter jejuni RM1221]
 gi|86150560|ref|ZP_01068784.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|86152389|ref|ZP_01070599.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 260.94]
 gi|121612583|ref|YP_999729.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 81-176]
 gi|148926828|ref|ZP_01810507.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CG8486]
 gi|218561703|ref|YP_002343482.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|315123625|ref|YP_004065629.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
 gi|11387106|sp|Q9PJA1|RNH2_CAMJE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|73621839|sp|Q5HXE7|RNH2_CAMJR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|166225180|sp|A1VX88|RNH2_CAMJJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|57165727|gb|AAW34506.1| ribonuclease HII [Campylobacter jejuni RM1221]
 gi|85839012|gb|EAQ56277.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85840686|gb|EAQ57938.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 260.94]
 gi|87248943|gb|EAQ71905.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 81-176]
 gi|112359409|emb|CAL34191.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|145844553|gb|EDK21660.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CG8486]
 gi|284925313|gb|ADC27665.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315017347|gb|ADT65440.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
 gi|315057450|gb|ADT71779.1| Ribonuclease HII [Campylobacter jejuni subsp. jejuni S3]
          Length = 191

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 68/197 (34%), Positives = 108/197 (54%), Gaps = 8/197 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           +  F+ + ++ E ++  + GIDE GRGALAGP+++AA  L  N    G+ DSKK+S KKR
Sbjct: 2   KTLFDTKELLNEFDINLI-GIDEAGRGALAGPMMMAACKL--NKQLDGLCDSKKLSEKKR 58

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
           EELYE I  ++   I + S + ID   +       +    ++ +      L DG +   +
Sbjct: 59  EELYEIIIKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFKTENNF-LYDGNT---N 114

Query: 129 LPCQ-AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           L        IK D+  L ++AASI+AKV++DR+M    K +P Y F+ +  Y T  H++ 
Sbjct: 115 LGINGIKTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKEF 174

Query: 188 IKEKGPSCIHRLTFRPL 204
           I + G   +HR +F+ L
Sbjct: 175 IAKFGICKLHRKSFKLL 191


>gi|294631838|ref|ZP_06710398.1| ribonuclease HII [Streptomyces sp. e14]
 gi|292835171|gb|EFF93520.1| ribonuclease HII [Streptomyces sp. e14]
          Length = 233

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 73/202 (36%), Positives = 113/202 (55%), Gaps = 2/202 (0%)

Query: 8   ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           E P   +E  +R       +AG+DEVGRGA AGPV V A +      P G+ DSK ++ K
Sbjct: 4   EPPTHTVERSLRATTGAKVIAGVDEVGRGAWAGPVTVCAAVTGLRRPPVGLTDSKLLTVK 63

Query: 67  KREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R EL  ++       ++  AS + ID   +  A   A   A+E L V P + ++DG+  
Sbjct: 64  RRNELDAELRKWVTAYALGHASPEEIDDLGMTAALRLAASRALEALPVRPDAVILDGKHD 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
               P +   VIKGD   +++AAAS+IAKV RD++M     ++ D+GF ++ GYP+  H+
Sbjct: 124 YLGAPWKVRTVIKGDRSCVAVAAASVIAKVHRDKMMAELGSEHADFGFAANAGYPSPVHK 183

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
             ++E+GP+  HRL++  L  L
Sbjct: 184 AALEERGPTPYHRLSWAYLDAL 205


>gi|167043779|gb|ABZ08470.1| putative Ribonuclease HII [uncultured marine microorganism
           HF4000_APKG3D20]
          Length = 252

 Score =  185 bits (470), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 108/230 (46%), Gaps = 40/230 (17%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--------FGINDSK 61
           P +  +     K    + G+DE GRG LAGPVV  A++L                +NDSK
Sbjct: 4   PLWTHDRKA-SKGRAGIVGVDEAGRGCLAGPVVAGAMLLPTGFFKKASNRRRCVEVNDSK 62

Query: 62  KISHKKREELYEKITS-----SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116
           +++ ++RE+L++ I           +   A+   I+  NI  AT  A+  A++ L     
Sbjct: 63  QLNEEQREKLFKTIERLRDLGELWFTTGEATVNEIESENIVGATCIAMRRAMDALGDKCE 122

Query: 117 -------------------------SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASI 151
                                      L+DG+ + + LP     ++KGD++SL +A ASI
Sbjct: 123 GRWGPQDKDEAEGFFASEIEQSERWIVLVDGKPM-KRLPHAHEGLVKGDTLSLGVAMASI 181

Query: 152 IAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            AKVTRDR+MR   + YP Y F S+ GY +  H + + E GP+ +HR  F
Sbjct: 182 AAKVTRDRIMRKLDQSYPAYDFASNKGYGSPNHLRGLDEHGPTEVHRPRF 231


>gi|225155690|ref|ZP_03724178.1| Ribonuclease H [Opitutaceae bacterium TAV2]
 gi|224803484|gb|EEG21719.1| Ribonuclease H [Opitutaceae bacterium TAV2]
          Length = 278

 Score =  185 bits (470), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 107/230 (46%), Gaps = 39/230 (16%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI--------N 58
           P+ P      +        + G+DE GRGALAGPVV AA+++    +            N
Sbjct: 27  PKPPQLRGFDLRNLAGHAELIGVDEAGRGALAGPVVAAAVLVRRVFLESRWVAHNASRVN 86

Query: 59  DSKKISHKKREELYEKITSSAI-----ISISSASHQYIDKHNIHKATLDAIYHAVENL-- 111
           DSK++S  +R+ L  +  + A+     +    A    I++ NI  AT  A+  A+E +  
Sbjct: 87  DSKQLSAPERDALAFEFETLAVENAIRVGCGVAEVSEIEQFNILGATKLAMRRALECIHP 146

Query: 112 ------QVIPRS-----------------ALIDGRSIPEDLPCQAFAVIKGDSISLSIAA 148
                 QV P                    +IDG  + +  P     ++KGD+ SL IA 
Sbjct: 147 PEAFQQQVEPDLFSTEAELAAWRNRVSCRIIIDGLPL-KSFPYPHLGIVKGDARSLCIAM 205

Query: 149 ASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           ASIIAKVTRDRL+     ++P YGF  H GY T +H++ +   GP   HR
Sbjct: 206 ASIIAKVTRDRLLTELDARHPGYGFAQHKGYGTEEHREAVLRLGPCVQHR 255


>gi|290956942|ref|YP_003488124.1| ribonuclease HII [Streptomyces scabiei 87.22]
 gi|260646468|emb|CBG69565.1| putative ribonuclease HII [Streptomyces scabiei 87.22]
          Length = 233

 Score =  185 bits (470), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 75/202 (37%), Positives = 112/202 (55%), Gaps = 2/202 (0%)

Query: 8   ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           E P   +E  +R       VAG+DEVGRGA AGPV V A +      P G+ DSK ++ K
Sbjct: 4   EPPTHTVERSLRATTGAKIVAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLLTIK 63

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +RE L E++       ++  AS + ID   +  A   A   A+E L V P + ++DG+  
Sbjct: 64  RRESLSEELLKWVTSHALGHASPEEIDDLGMTAALRLAAVRALEALPVRPDAVILDGKHD 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
               P +   VIKGD   +++AAAS+IAKV RD++M      + D+GF ++ GYP+  H+
Sbjct: 124 YLGSPWRVRTVIKGDQSCVAVAAASVIAKVQRDKMMAELGVDHADFGFAANAGYPSPVHK 183

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
             + E+GP+  HRL++  L  L
Sbjct: 184 AALAERGPTPYHRLSWAYLDAL 205


>gi|307637994|gb|ADN80444.1| Ribonuclease H II [Helicobacter pylori 908]
 gi|325996599|gb|ADZ52004.1| Ribonuclease HII [Helicobacter pylori 2018]
 gi|325998189|gb|ADZ50397.1| Ribonuclease HII [Helicobacter pylori 2017]
          Length = 191

 Score =  185 bits (470), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 63/188 (33%), Positives = 92/188 (48%), Gaps = 11/188 (5%)

Query: 28  GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAIIS- 82
           GIDE GRG L G + VA ++         +  G+ DSKK+S KKR  L  KI +   +  
Sbjct: 4   GIDEAGRGCLVGSLFVAGVVCGGKTALEFLEMGLKDSKKLSPKKRFFLENKIKTHDEVEF 63

Query: 83  -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138
            +   S + ID   +      AI   VEN   +     IDG +   + +  P     +IK
Sbjct: 64  FVVKKSAEAIDHLGLGACLKLAIQEIVENGCSLANEIKIDGNTAFGLNKRYP-NIQTIIK 122

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD     IA AS++AK  +DR M   H  + +YG+D + GY T +H + I + G +  HR
Sbjct: 123 GDETIAQIAMASVLAKAAKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHR 182

Query: 199 LTFRPLRN 206
            +F  L+N
Sbjct: 183 HSF-TLKN 189


>gi|116075704|ref|ZP_01472963.1| Ribonuclease HII and HIII [Synechococcus sp. RS9916]
 gi|116067019|gb|EAU72774.1| Ribonuclease HII and HIII [Synechococcus sp. RS9916]
          Length = 193

 Score =  184 bits (469), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 68/180 (37%), Positives = 100/180 (55%), Gaps = 5/180 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA-II 81
           AG+DEVGRG   GPV  AA++L           G+ DSK ++ + R  L   I  +A   
Sbjct: 6   AGVDEVGRGCWFGPVFAAAVVLSEAAASALTAEGLTDSKALTARHRARLVPLIEDAAEAW 65

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
           ++  AS + ID H I +AT  A+  A++ L   P   L+DG       P     +++GDS
Sbjct: 66  ALGQASAREIDHHGIRRATELAMLRALQRLPQQPALVLVDGVLPLRLWPHSQQTIVRGDS 125

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
              SIAAAS++AK +RD L+R   +++P YG + H GY TA H+Q +   GP+ +HR +F
Sbjct: 126 SKASIAAASVLAKESRDALIRRLAERFPGYGLERHAGYGTAVHRQALLAHGPTAMHRCSF 185


>gi|182435502|ref|YP_001823221.1| ribonuclease HII [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|238688997|sp|B1VXS2|RNH2_STRGG RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|178464018|dbj|BAG18538.1| putative ribonuclease HII [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 236

 Score =  184 bits (469), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 75/205 (36%), Positives = 112/205 (54%), Gaps = 5/205 (2%)

Query: 8   ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           E P   +E  +R       VAG+DEVGRGA AGPV V A +      P G+ DSK ++ +
Sbjct: 4   EPPTHTVERSLRATTGARTVAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLLTPR 63

Query: 67  KREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R EL   + S     ++  AS Q ID   +  A   A   A+E L V P + ++DG+  
Sbjct: 64  RRAELDPVLRSWVTAYALGDASPQEIDDLGMTAALRLAAVRALEGLPVRPDAVILDGKHD 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH---KKYPDYGFDSHVGYPTA 182
              +P +   VIKGD   +++AAAS+IAKV RDR+M       +   D+ F ++ GYP+ 
Sbjct: 124 YLGVPWKVRTVIKGDQSCIAVAAASVIAKVHRDRMMAELGAASEDCADFDFGANAGYPSP 183

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207
            H+  ++E+GP+  HRL++  L  L
Sbjct: 184 VHRAALEERGPTAHHRLSWAYLDAL 208


>gi|300741389|ref|ZP_07071410.1| ribonuclease HII [Rothia dentocariosa M567]
 gi|300380574|gb|EFJ77136.1| ribonuclease HII [Rothia dentocariosa M567]
          Length = 264

 Score =  184 bits (469), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 104/232 (44%), Gaps = 40/232 (17%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKR 68
           + E E  +       +AG+DEVGRGALAGPV V   +LD  N  I  G+ DSK ++ K+R
Sbjct: 5   NLEHEQKLFTAGYRLIAGLDEVGRGALAGPVSVGVAVLDQQNQRILEGLTDSKALTPKRR 64

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRS- 124
           E L  +I      +I   +   ID   +  A   A   A+ +L    + P +AL+DG+  
Sbjct: 65  EALIPRIQKWCSYAIGHTTPAEIDVLGMTYALRLAAQRALADLAYRGLYPEAALLDGKHD 124

Query: 125 ----------------------------------IPEDLPCQAFAVIKGDSISLSIAAAS 150
                                             + +        +IKGD    SIAAAS
Sbjct: 125 WLSPPPENLFDSMDPVHRRYEELLHRVWNGANSAVEKGWSGPVTTIIKGDYQCASIAAAS 184

Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           ++AKV RD  M     + P YG+  + GY +  H+Q I E GPS  HRL++ 
Sbjct: 185 VVAKVDRDAFMESLSAENPHYGWVKNKGYGSVAHRQAISEYGPSIYHRLSWS 236


>gi|328885537|emb|CCA58776.1| Ribonuclease HII [Streptomyces venezuelae ATCC 10712]
          Length = 236

 Score =  184 bits (469), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 75/205 (36%), Positives = 107/205 (52%), Gaps = 5/205 (2%)

Query: 8   ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           E P   +E  +R       VAG+DEVGRGA AGPV V A +      P G+ DSK I+ K
Sbjct: 4   EPPTHTVERSLRATTGAKIVAGVDEVGRGAWAGPVTVCAAVTGLRRAPEGLTDSKLITPK 63

Query: 67  KREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R  L  ++       ++  AS Q ID+  +  A   A   A+E L V P + ++DG+  
Sbjct: 64  RRTTLAAELEGWVTAYALGDASPQEIDELGMTAALRLAAVRALEGLPVRPDAVILDGKHD 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA---HKKYPDYGFDSHVGYPTA 182
               P Q   VIKGD   +++AAAS+IAKV RD  M         Y  Y F ++ GYP+ 
Sbjct: 124 YLGGPWQVRTVIKGDQSCIAVAAASVIAKVRRDAFMAELETSAGDYAAYAFGANAGYPSP 183

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207
            H+  ++E GP+  HRL++  L  +
Sbjct: 184 VHKAALEELGPTPHHRLSWSYLDAM 208


>gi|302557990|ref|ZP_07310332.1| ribonuclease HII [Streptomyces griseoflavus Tu4000]
 gi|302475608|gb|EFL38701.1| ribonuclease HII [Streptomyces griseoflavus Tu4000]
          Length = 233

 Score =  184 bits (468), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 73/202 (36%), Positives = 110/202 (54%), Gaps = 2/202 (0%)

Query: 8   ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           E P   +E  +R       VAG+DEVGRGA AGPV V A +      P G+ DSK ++ K
Sbjct: 4   EPPTHTVERSLRATTGAKIVAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLLTVK 63

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R +L E +       ++  AS + ID   +  A   A   A+E L V P + ++DG+  
Sbjct: 64  RRTQLAETLRGWVTSYALGHASPEEIDAMGMTAALRLAAGRALEALPVRPDAVILDGKHD 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
               P +   VIKGD   +++AAAS+IAKV RD++M      + D+GF  + GYP+  H+
Sbjct: 124 YLGTPWRVRTVIKGDQSCVAVAAASVIAKVQRDKMMAELGIDHADFGFADNAGYPSPVHR 183

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
             ++ +GP+  HRL++  L  L
Sbjct: 184 AALEVRGPTPYHRLSWAYLDAL 205


>gi|315637835|ref|ZP_07893025.1| ribonuclease HII [Campylobacter upsaliensis JV21]
 gi|315482076|gb|EFU72690.1| ribonuclease HII [Campylobacter upsaliensis JV21]
          Length = 174

 Score =  184 bits (468), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 68/178 (38%), Positives = 104/178 (58%), Gaps = 8/178 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           + GIDE GRGALAGP+ +AA  +L P N    + DSKK+S KKRE+LY +I  ++   I 
Sbjct: 2   LVGIDEAGRGALAGPLFMAACELLKPLNE---LKDSKKLSEKKREKLYNEIILNSNYLIL 58

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           + S+  ID   + K     +   + +L    +  + DG +    L  +   +IK DS+  
Sbjct: 59  AFSNAQIDTLGLSKCLQRGLE--IIHLHFEKQRKIFDGNTNYGVLGIE--NLIKADSLIA 114

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            ++AASI+AKV+RD++M+    KYP YGF+ H  Y T  H++ I + G   +HRL+F+
Sbjct: 115 EVSAASILAKVSRDKVMQFLALKYPQYGFEIHKAYGTKAHRESIAKYGACKLHRLSFK 172


>gi|257068188|ref|YP_003154443.1| ribonuclease HII [Brachybacterium faecium DSM 4810]
 gi|256559006|gb|ACU84853.1| ribonuclease HII [Brachybacterium faecium DSM 4810]
          Length = 272

 Score =  184 bits (468), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 67/210 (31%), Positives = 101/210 (48%), Gaps = 17/210 (8%)

Query: 10  PHFELEAMV---REKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSK 61
           P  ++E  +   R      + G+DEVGRGALAGPV V A  ++        +P G+ DSK
Sbjct: 6   PTLQVEQSLAVGRGPGRRIIVGVDEVGRGALAGPVAVGACAVEVVGGLAAPLPEGVRDSK 65

Query: 62  KISHKKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K++ ++RE L E I  S +   +  AS   ID+  I  A   A   A++ L V   + ++
Sbjct: 66  KLTARRREALVEPILGSVLAGAVGWASPAEIDEIGIMPALTTAALRALDLLGVAADAIVL 125

Query: 121 DG--------RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172
           DG         + P          +  D    S+AAASI+AKV RD  M     + P+Y 
Sbjct: 126 DGDVDVLTPALTAPGRPTPLVHLQVSADRDCASVAAASILAKVARDARMVELDAEAPEYC 185

Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           + S+ GY +  H++ I   G    HR ++R
Sbjct: 186 WASNKGYGSKPHREAIDRFGVHAHHRRSWR 215


>gi|195953419|ref|YP_002121709.1| Ribonuclease H [Hydrogenobaculum sp. Y04AAS1]
 gi|195933031|gb|ACG57731.1| Ribonuclease H [Hydrogenobaculum sp. Y04AAS1]
          Length = 213

 Score =  184 bits (468), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 71/194 (36%), Positives = 98/194 (50%), Gaps = 11/194 (5%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAI------ILDPNNIPFGINDSKKISHKK 67
            E    ++ +   A +DE GRGALAGP+VV AI      I           DSKK+    
Sbjct: 21  YEHQFLKRGLTL-ACVDEAGRGALAGPLVVGAILVDNLDIFFEEEYTLIKGDSKKLKEAD 79

Query: 68  REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
           R   ++ I      S+  A+HQ ID   I KAT  A+  A+E L+      L D  ++ E
Sbjct: 80  RFWAFDTIKKYFKYSVGIATHQEIDDFGITKATKMAMKRALEALKGF-DIVLSDFINL-E 137

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           D  C    ++KGD  S SI  AS++AK TRD++M      +  + FD H GY T +H + 
Sbjct: 138 DYDC--IPIVKGDEKSFSIRLASLVAKATRDKMMIDYASSFKPFSFDKHKGYGTKEHIKE 195

Query: 188 IKEKGPSCIHRLTF 201
           IK+ G S IHR +F
Sbjct: 196 IKDFGLSSIHRRSF 209


>gi|182413915|ref|YP_001818981.1| ribonuclease H [Opitutus terrae PB90-1]
 gi|177841129|gb|ACB75381.1| Ribonuclease H [Opitutus terrae PB90-1]
          Length = 261

 Score =  184 bits (467), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 111/240 (46%), Gaps = 41/240 (17%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-------- 57
           +P+R       + + + +  + G+DE GRGALAGPVV  A+++    +            
Sbjct: 1   MPKRRQLRAFDLKQIEGLSGLIGVDEAGRGALAGPVVAGAVMVTKEFLEGRWAVTKAGRV 60

Query: 58  NDSKKISHKKREEL---YEKITSSAIISI--SSASHQYIDKHNIHKATLDAIYHAVENL- 111
           NDSK+++   REEL   +E++ +   I      A    +++ NI  AT  A+  A+E + 
Sbjct: 61  NDSKQLTPAMREELWAEFEELVNQGQIHATFGVADVAEVEQLNILGATKLAMQRALEAIY 120

Query: 112 -------QVIPRS-----------------ALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147
                  +  P                    L+DG ++    P    ++I GD+ SL IA
Sbjct: 121 PPSAFQQKTEPDLFTSAEELAAYQPTVSCRILLDGLAM-RKFPYPHHSIISGDARSLCIA 179

Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
            ASI+AKV RDRLM     K+P YGF  H GY T +H + +   G    HR  F  LR L
Sbjct: 180 MASIVAKVQRDRLMCELELKHPGYGFAQHKGYGTPEHCEALLRLGRCAQHRDLF--LRKL 237


>gi|283458215|ref|YP_003362833.1| ribonuclease HII [Rothia mucilaginosa DY-18]
 gi|283134248|dbj|BAI65013.1| ribonuclease HII [Rothia mucilaginosa DY-18]
          Length = 278

 Score =  184 bits (467), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 105/242 (43%), Gaps = 43/242 (17%)

Query: 4   NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSK 61
            + P     E E  +       VAGIDEVGRG++AGPV V   IL P+      G+ DSK
Sbjct: 21  KATPPAADLEYEQQLFASGARTVAGIDEVGRGSMAGPVTVGVAILTPDATLEVGGLIDSK 80

Query: 62  KISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSA 118
            +S  +RE +  +I     +++       ID+  +  +   A   A+  L        +A
Sbjct: 81  ALSPARRESMVPEIRQWCAVAVGHVEPADIDRLGMTLSLRLAAQRALAELARRGYRADAA 140

Query: 119 LIDGRSI-----PEDL---------------------------------PCQAFAVIKGD 140
           L+DG+        EDL                                       VIKGD
Sbjct: 141 LLDGKHDWFTPPQEDLFSALAPDPAQAHYNALLAQAWEGAGEGGAGEPAQMPVTMVIKGD 200

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
               SIAAAS++AKV RD LM     +YP YG+  + GY +A H++ I  +GPS  HRL+
Sbjct: 201 YKCASIAAASVVAKVERDELMVQLDTRYPGYGWAKNKGYGSAAHREAISVQGPSPQHRLS 260

Query: 201 FR 202
           + 
Sbjct: 261 WS 262


>gi|328955473|ref|YP_004372806.1| RNase HII [Coriobacterium glomerans PW2]
 gi|328455797|gb|AEB06991.1| RNase HII [Coriobacterium glomerans PW2]
          Length = 262

 Score =  184 bits (467), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 72/189 (38%), Positives = 103/189 (54%), Gaps = 3/189 (1%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73
            E   R      V G+DEVGRG++AGP+ V A+ L P  I +G+NDSK++S  KR++L  
Sbjct: 65  YEMQTRLGGRGVVIGVDEVGRGSVAGPLTVCAVCLPPTPIIWGVNDSKRLSAAKRQKLAA 124

Query: 74  KITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132
           +I   A  I I       ID+  +  A   A+  AV +  + P   L+DG   P     +
Sbjct: 125 RIERIARAIGICHIPACDIDRCGMGAALRHAVRLAVADCGLEPDCVLMDGN--PLGAVER 182

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              V+ GD++  SIAAASI+AKVTRD LM      YP Y   +  GY + +H + I+E+G
Sbjct: 183 ERCVVHGDALVASIAAASIVAKVTRDDLMIELDSTYPGYHLAASKGYASPEHIEAIRERG 242

Query: 193 PSCIHRLTF 201
            +  HR +F
Sbjct: 243 LTPEHRASF 251


>gi|170743460|ref|YP_001772115.1| ribonuclease H [Methylobacterium sp. 4-46]
 gi|168197734|gb|ACA19681.1| Ribonuclease H [Methylobacterium sp. 4-46]
          Length = 209

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 79/199 (39%), Positives = 112/199 (56%), Gaps = 9/199 (4%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKI 63
           +RP    EA         + G DEVGRGAL GPV+VAA+  DP  +P      ++DSK++
Sbjct: 2   KRPFLAREAA----RYPALIGCDEVGRGALCGPVIVAAVHFDPAALPPDLLEALDDSKRL 57

Query: 64  SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
               R  L  ++ + A I+ + AS   ID+ N+  ATLDA+  AV  L  +     +DGR
Sbjct: 58  DAATRARLAARLPALARIAYAGASRDLIDRINVRAATLDAMARAVLRLG-LAGPVAVDGR 116

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
             P  L  +  AVI G+ +   IAAASI+AKV RDRLM +  +++P Y +  + GY TA 
Sbjct: 117 DRPPGLDGRVRAVIGGERLVPQIAAASILAKVLRDRLMAVLARRHPAYAWARNAGYGTAA 176

Query: 184 HQQVIKEKGPSCIHRLTFR 202
           H+  +  +GPS  HR +FR
Sbjct: 177 HRAALLREGPSPHHRRSFR 195


>gi|139439754|ref|ZP_01773145.1| Hypothetical protein COLAER_02176 [Collinsella aerofaciens ATCC
           25986]
 gi|133774904|gb|EBA38724.1| Hypothetical protein COLAER_02176 [Collinsella aerofaciens ATCC
           25986]
          Length = 262

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 61/169 (36%), Positives = 92/169 (54%), Gaps = 3/169 (1%)

Query: 34  RGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSASHQYID 92
           RG++AGP+ V A+ L      +GINDSKK++  +RE L  KI   A  I     + + ID
Sbjct: 85  RGSVAGPLTVCAVCLPMEPRVWGINDSKKLTPARRELLSVKIAEVATAIGFCHIAPKDID 144

Query: 93  KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASII 152
           +  + +A   A+  AV +  + P   L+DG   P         V+KGD+    IAAASI+
Sbjct: 145 EMGMARAIRTAVAGAVADTGLEPDCVLMDGN--PLGAVPNERDVVKGDAKIACIAAASIM 202

Query: 153 AKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           AKVTRD +M     +YP+Y      GY + +H + I++ G   +HR++F
Sbjct: 203 AKVTRDEMMVEYDAEYPEYHLAESKGYASPEHIEAIRKHGLCPLHRVSF 251


>gi|223038412|ref|ZP_03608706.1| ribonuclease HII [Campylobacter rectus RM3267]
 gi|222880269|gb|EEF15356.1| ribonuclease HII [Campylobacter rectus RM3267]
          Length = 189

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 63/191 (32%), Positives = 100/191 (52%), Gaps = 8/191 (4%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77
           ++ K+   + GIDE GRGALAGP+ VAA +L       G NDSKK++ K+REEL+ +I  
Sbjct: 1   MKNKSNAQICGIDEAGRGALAGPLAVAACVLK--REIAGPNDSKKLTAKRREELFGQIAG 58

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137
           ++   I+  S++ ID+  + +    A+   +          L DG +   +       ++
Sbjct: 59  NSEFLIAYFSNEQIDELGLSECLRRALR--LFKSHFAGCEPLYDGNA---NYGTGVKTMV 113

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197
             D     ++AASI+AKV+RD LMR     +  YG+ +H GY T  H   I   G S + 
Sbjct: 114 GADGKVAQVSAASILAKVSRDVLMRAWDGVHGGYGYAAHKGYGTKAHLDAIARLGDSPLQ 173

Query: 198 RLTFRPLRNLS 208
           R +FR +++  
Sbjct: 174 RRSFR-VKSFE 183


>gi|295396057|ref|ZP_06806241.1| ribonuclease HII [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971145|gb|EFG47036.1| ribonuclease HII [Brevibacterium mcbrellneri ATCC 49030]
          Length = 231

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 67/207 (32%), Positives = 102/207 (49%), Gaps = 20/207 (9%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-----PFGINDSKKISHKKRE 69
           E  + +  +  V G+DEVGRG +AGPV V A+  D   +     P G+ DSKK++ + R 
Sbjct: 23  ERALLDAGVTSVVGMDEVGRGCVAGPVGVGAVWCDLEALCAGGFPAGLRDSKKLTPRPRS 82

Query: 70  ELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR----- 123
              E++ +      ++ AS Q ID   I  A   A   A+  L       ++DG+     
Sbjct: 83  LAAERVRATWEHAVVAYASPQEIDAMGISAALSLAGRRALAQL-PAADLVMLDGKFNWLG 141

Query: 124 SIPEDLPC--------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
           + P  L               + GD   + IAAAS+IAKV RD +M    +++  YG+ S
Sbjct: 142 TDPGLLGGDVSHVEVPPVRMYVGGDDQRIPIAAASLIAKVDRDAVMSSLDREHHGYGWAS 201

Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           +VGYP+  H+Q I + G +  HR +FR
Sbjct: 202 NVGYPSPAHKQAIADLGVTPWHRKSFR 228


>gi|78185595|ref|YP_378029.1| ribonuclease HII [Synechococcus sp. CC9902]
 gi|97189417|sp|Q3AW47|RNH2_SYNS9 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|78169889|gb|ABB26986.1| RNase HII [Synechococcus sp. CC9902]
          Length = 199

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 75/188 (39%), Positives = 100/188 (53%), Gaps = 7/188 (3%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAI 80
            VAG+DEVGRG L GPV  AA++LD          G+ DSKK+S K+R  L   I    +
Sbjct: 12  RVAGVDEVGRGCLFGPVFAAAVVLDEVAEQRLWQAGLTDSKKLSAKRRAGLVPLIEQHCL 71

Query: 81  I-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
              +  AS   ID   I  AT  A+  A++ L   P   L+DG             V+ G
Sbjct: 72  TRGLGQASAHEIDAVGIRGATERAMLRALQKLAHPPNVVLVDGNLPLRLWSGSQQTVVGG 131

Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           DS S +IAAAS++AK  RD L+R    ++P YG + H GY TA HQ+ +   GP+ +HR 
Sbjct: 132 DSRSAAIAAASVLAKEARDALIRRLSDQFPGYGLERHAGYGTALHQKALLALGPTSLHRR 191

Query: 200 TFRPLRNL 207
           +F  LR L
Sbjct: 192 SF--LRRL 197


>gi|255326009|ref|ZP_05367097.1| ribonuclease HII [Rothia mucilaginosa ATCC 25296]
 gi|255296900|gb|EET76229.1| ribonuclease HII [Rothia mucilaginosa ATCC 25296]
          Length = 276

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 105/241 (43%), Gaps = 41/241 (17%)

Query: 3   CNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDS 60
             + P     E E  +       VAGIDEVGRG++AGPV V   IL P+      G+ DS
Sbjct: 20  AKATPPAADLEYEQQLFASGARTVAGIDEVGRGSMAGPVTVGVAILTPDATLEVGGLIDS 79

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRS 117
           K +S  +RE +  +I     +++       ID+  +  +   A   A+  L        +
Sbjct: 80  KALSPARRESMVPEIRQWCAVAVGHVEPADIDRLGMTLSLRLAAQRALAELARRGYRADA 139

Query: 118 ALIDGRSI-----PEDL-------------------------------PCQAFAVIKGDS 141
           AL+DG+        EDL                                     VIKGD 
Sbjct: 140 ALLDGKHDWFTPPQEDLFSALAPDPAQAHYNALLAQAWEGAGGAGEPAQMPVTMVIKGDY 199

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
              SIAAAS++AKV RD LM     +YP YG+  + GY +A H++ I  +GPS  HRL++
Sbjct: 200 KCASIAAASVVAKVERDELMVQLDIRYPGYGWAKNKGYGSAAHREAISVQGPSPQHRLSW 259

Query: 202 R 202
            
Sbjct: 260 S 260


>gi|297191618|ref|ZP_06909016.1| ribonuclease HII [Streptomyces pristinaespiralis ATCC 25486]
 gi|197719359|gb|EDY63267.1| ribonuclease HII [Streptomyces pristinaespiralis ATCC 25486]
          Length = 233

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 76/202 (37%), Positives = 112/202 (55%), Gaps = 2/202 (0%)

Query: 8   ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           E P   +E  +R       VAGIDEVGRGA AGPV V A +      P G+ DSK I+ K
Sbjct: 4   EPPTHAVERSIRATTGAKIVAGIDEVGRGAWAGPVTVCAAVTGLRRPPVGLTDSKLITPK 63

Query: 67  KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R E+ E +       ++  AS + ID+  +  A   A   A+E L V P + ++DG+  
Sbjct: 64  RRAEMAELLEGWVTAHALGHASPEEIDELGMTAALRLAAGRALEGLPVRPDAIILDGKHD 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
              +P Q   VIKGD   +++AAAS+IAKV RD +M    +++  +GF  + GYP+  H+
Sbjct: 124 YLGVPWQVRTVIKGDQSCVAVAAASVIAKVHRDAMMAQLPEEFTAFGFADNAGYPSPVHK 183

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
             ++E GP+  HRL++  L  L
Sbjct: 184 AALRELGPTPYHRLSWAYLDYL 205


>gi|123969237|ref|YP_001010095.1| ribonuclease HII and HIII [Prochlorococcus marinus str. AS9601]
 gi|166226638|sp|A2BT77|RNH2_PROMS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|123199347|gb|ABM70988.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. AS9601]
          Length = 205

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 73/201 (36%), Positives = 110/201 (54%), Gaps = 8/201 (3%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSK 61
           + E+   +L+  + + +     GIDEVG+GA+ GPV  AA++L   N      FG+ DSK
Sbjct: 1   MQEKKEEDLQQALNKVSE---VGIDEVGKGAIFGPVFAAAVVLTEKNKFILKQFGVTDSK 57

Query: 62  KISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K++ KKR+ L  KI   S+   I  +S + IDK  I  AT  ++  A+  L+  P   +I
Sbjct: 58  KLTPKKRKLLLPKILLLSSDYGIGQSSAREIDKLGIRVATELSMIRALRKLKEKPSELII 117

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG  +          ++ GDS  +SIA+ASI+AKV+RD LM    K Y  Y    + GY 
Sbjct: 118 DGPLLLRPWNGIQKNIVSGDSKFISIASASIVAKVSRDNLMERLEKNYSGYLIFKNKGYG 177

Query: 181 TAKHQQVIKEKGPSCIHRLTF 201
           T +H  +IK+ G + +HR +F
Sbjct: 178 TREHLSLIKKNGITELHRKSF 198


>gi|33864055|ref|NP_895615.1| ribonuclease HII [Prochlorococcus marinus str. MIT 9313]
 gi|39932296|sp|Q7V4Z5|RNH2_PROMM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|33635639|emb|CAE21963.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9313]
          Length = 218

 Score =  182 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 62/181 (34%), Positives = 97/181 (53%), Gaps = 5/181 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSA-I 80
           +AG+DEVGRG   GPV   A++L        +  G+ DSK ++ ++R  L   I  +A  
Sbjct: 26  IAGVDEVGRGCWFGPVFAGAVVLTEVAAVELLAEGLTDSKALTVRRRARLVPLIEDAATA 85

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            ++  AS + ID   I  AT  A+  A++ L       L+DG             V++GD
Sbjct: 86  WALGQASAREIDALGIRSATELAMLRALQRLPTPLELVLVDGVLPLRLWMGPQRTVVRGD 145

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S   +IAAAS++AK  RD L++    ++  YG + HVGY TA H++ + + GP+ +HR +
Sbjct: 146 SKCAAIAAASVLAKQARDGLIKRLASRFYGYGLERHVGYGTAIHRRALLDLGPTELHRRS 205

Query: 201 F 201
           F
Sbjct: 206 F 206


>gi|329939992|ref|ZP_08289274.1| ribonuclease HII [Streptomyces griseoaurantiacus M045]
 gi|329300818|gb|EGG44714.1| ribonuclease HII [Streptomyces griseoaurantiacus M045]
          Length = 233

 Score =  182 bits (462), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 72/202 (35%), Positives = 112/202 (55%), Gaps = 2/202 (0%)

Query: 8   ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           E P   +E  +R       +AG+DEVGRGA AGPV V A +      P G+ DSK ++ K
Sbjct: 4   EPPTHTVERSLRATTGAKVIAGVDEVGRGAWAGPVTVCAAVTGLRRPPPGLTDSKLLTVK 63

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R EL E + +     ++  AS Q ID+  +  A   A   A+E L V P + ++DG+  
Sbjct: 64  RRTELAETLRTWVTSYALGHASPQEIDERGMTAALRLAAVRALEALPVRPDAVILDGKHD 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
               P +   VIKGD   +++AAAS++AKV RD++M      + D+ F ++ GYP+  H+
Sbjct: 124 YLGSPWKVRTVIKGDQSCVAVAAASVLAKVQRDKMMAELGVDHADFAFAANAGYPSPVHR 183

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
             ++ +GP+  HRL++  L  L
Sbjct: 184 AALEVRGPTPYHRLSWAYLDAL 205


>gi|291448253|ref|ZP_06587643.1| ribonuclease HII [Streptomyces roseosporus NRRL 15998]
 gi|291351200|gb|EFE78104.1| ribonuclease HII [Streptomyces roseosporus NRRL 15998]
          Length = 236

 Score =  182 bits (462), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 76/205 (37%), Positives = 111/205 (54%), Gaps = 5/205 (2%)

Query: 8   ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           E P   +E  +R       VAG+DEVGRGA AGPV V A I      P G+ DSK ++ +
Sbjct: 4   EPPTHTVERSIRATTGARTVAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLLTPR 63

Query: 67  KREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R EL   + S     ++  AS Q ID   +  A   A   A+E L V P + ++DG+  
Sbjct: 64  RRAELEPVLRSWVTACALGDASPQEIDDLGMTAALRLAAVRALEGLPVRPDAVILDGKHD 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH---KKYPDYGFDSHVGYPTA 182
               P +   VIKGD   +++AAAS+IAKV RDR+M       +    + FD++ GYP+ 
Sbjct: 124 YLGAPWKVRTVIKGDQSCIAVAAASVIAKVHRDRMMAELGAASEDCGGFAFDANAGYPSP 183

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207
            H+  ++E+GP+  HRL++  L  L
Sbjct: 184 VHRAALEERGPTVHHRLSWSYLDAL 208


>gi|326776139|ref|ZP_08235404.1| Ribonuclease H [Streptomyces cf. griseus XylebKG-1]
 gi|326656472|gb|EGE41318.1| Ribonuclease H [Streptomyces cf. griseus XylebKG-1]
          Length = 236

 Score =  182 bits (462), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 74/205 (36%), Positives = 112/205 (54%), Gaps = 5/205 (2%)

Query: 8   ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           E P   +E  +R       VAG+DEVGRGA AGPV V A +      P G+ DSK ++ +
Sbjct: 4   EPPTHTVERSLRATTGARTVAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLLTPR 63

Query: 67  KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R E+   + S     ++  AS Q ID   +  A   A   A+E L V P + ++DG+  
Sbjct: 64  RRAEIDPVLRSWVTAHALGDASPQEIDDLGMTAALRLAAVRALEGLPVRPDAVILDGKHD 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH---KKYPDYGFDSHVGYPTA 182
              +P +   VIKGD   +++AAAS+IAKV RDR+M       +   D+ F ++ GYP+ 
Sbjct: 124 YLGVPWKVRTVIKGDQSCIAVAAASVIAKVHRDRMMAELGAASEDCADFDFGANAGYPSP 183

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207
            H+  ++E+GP+  HRL++  L  L
Sbjct: 184 VHRAALEERGPTAHHRLSWAYLDAL 208


>gi|124024062|ref|YP_001018369.1| ribonuclease HII [Prochlorococcus marinus str. MIT 9303]
 gi|189043640|sp|A2CC94|RNH2_PROM3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|123964348|gb|ABM79104.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9303]
          Length = 200

 Score =  182 bits (462), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 61/181 (33%), Positives = 97/181 (53%), Gaps = 5/181 (2%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSA-I 80
           +AG+DEVGRG   GPV   A++L        +  G+ DSK ++ ++R  L   I  +A  
Sbjct: 8   IAGVDEVGRGCWFGPVFAGAVVLTEVAAVELLAEGLTDSKALTVRRRARLVPLIEDAATA 67

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            ++  AS + ID   I  AT  ++  A++ L       L+DG             V++GD
Sbjct: 68  WALGQASAREIDALGIRSATELSMLRALQRLPTPLELVLVDGVLPLRLWMGPQRTVVRGD 127

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S   +IAAAS++AK  RD L++    ++  YG + HVGY TA H++ + + GP+ +HR +
Sbjct: 128 SKCAAIAAASVLAKQARDGLIKRLASRFYGYGLERHVGYGTAIHRRALLDLGPTALHRRS 187

Query: 201 F 201
           F
Sbjct: 188 F 188


>gi|257063750|ref|YP_003143422.1| ribonuclease HII [Slackia heliotrinireducens DSM 20476]
 gi|256791403|gb|ACV22073.1| ribonuclease HII [Slackia heliotrinireducens DSM 20476]
          Length = 258

 Score =  181 bits (461), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 70/198 (35%), Positives = 101/198 (51%), Gaps = 10/198 (5%)

Query: 12  FELEAMVREK----NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
             LE+M              G+DEVGRG +AGP+ VAA++L       G+NDSK+++   
Sbjct: 53  LRLESMYATASALAGGGLAMGLDEVGRGPVAGPLTVAAVVLPDAPRIEGLNDSKQVAPAA 112

Query: 68  REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVI---PRSALIDGR 123
           R  + E I + A+   I       ID + +      A   A+  +        + L+DG 
Sbjct: 113 RTRMAESIKACALAWDIEFIEPHDIDAYGMSACLRTAFGQAIAAIDEQLSGVAAVLLDGN 172

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
             P  +  +   +IKGD+    IAAASIIAKV RD LM    K+YP YGFDS+ GY +A 
Sbjct: 173 --PLHIDPRERNIIKGDAKCAPIAAASIIAKVERDALMCEYAKEYPQYGFDSNKGYGSAD 230

Query: 184 HQQVIKEKGPSCIHRLTF 201
           H + I+  G + +HR +F
Sbjct: 231 HIEAIRTYGLTPVHRASF 248


>gi|113953937|ref|YP_729607.1| ribonuclease HII [Synechococcus sp. CC9311]
 gi|122945826|sp|Q0ID65|RNH2_SYNS3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|113881288|gb|ABI46246.1| ribonuclease HII [Synechococcus sp. CC9311]
          Length = 197

 Score =  181 bits (461), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 66/187 (35%), Positives = 102/187 (54%), Gaps = 7/187 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA-I 80
           +AG+DEVGRG L GPV  AA++L  +        G+ DSK ++  +R  L   I + A  
Sbjct: 9   IAGVDEVGRGCLFGPVFAAAVVLSDHAAEHLQAAGLTDSKALTPSRRAALVPLIEAHAHA 68

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
             +  +S + +D+  I  AT  A+  A++ L   P+  L+DG             +++GD
Sbjct: 69  WGLGQSSARAVDRDGIRSATEQAMLCALQRLPCRPQLVLVDGVLPLRLWEGSQRTIVRGD 128

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S   +IAAAS++AK  RD L+R    ++P YG + H GY TA+H+  +   GP+ +HR +
Sbjct: 129 SSHAAIAAASVLAKEARDALIRRLSNRFPGYGLERHAGYGTAQHRAALLACGPTPLHRHS 188

Query: 201 FRPLRNL 207
           F  LR L
Sbjct: 189 F--LRKL 193


>gi|326403378|ref|YP_004283459.1| ribonuclease HII [Acidiphilium multivorum AIU301]
 gi|325050239|dbj|BAJ80577.1| ribonuclease HII [Acidiphilium multivorum AIU301]
          Length = 199

 Score =  181 bits (460), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 87/200 (43%), Positives = 111/200 (55%), Gaps = 9/200 (4%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG---INDSKKISH 65
            P F  E  +       VAG+DEVGRG LAGPVV AA IL  +  P     I+DSK++S 
Sbjct: 1   MPDFSRELALG----GVVAGVDEVGRGPLAGPVVAAAAILPADLPPEIAALIDDSKRLSP 56

Query: 66  KKREELYEK-ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
            +RE      I S A IS ++AS   I + NI +A+L A+  AV  L V P   L+DG  
Sbjct: 57  ARREAALAALIESGAAISAAAASVAEIARLNILQASLLAMRRAVARLAVRPDHVLVDG-Q 115

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +  DLP     V+ GD +SLSIAAASI AK+ RDR M    ++YP YG+  + GY T  H
Sbjct: 116 VAPDLPMPCTPVVGGDGLSLSIAAASIAAKLVRDRAMSRLDRRYPGYGWARNSGYATKTH 175

Query: 185 QQVIKEKGPSCIHRLTFRPL 204
           +  I   G +  HR  F PL
Sbjct: 176 RDAILGLGITPHHRRGFGPL 195


>gi|307718734|ref|YP_003874266.1| ribonuclease HII [Spirochaeta thermophila DSM 6192]
 gi|306532459|gb|ADN01993.1| ribonuclease HII [Spirochaeta thermophila DSM 6192]
          Length = 193

 Score =  181 bits (460), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 82/186 (44%), Positives = 106/186 (56%), Gaps = 8/186 (4%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82
           M  V GIDEVGRG LAGPVV AA++L P     G+ DSKK+S ++RE L+  I  +A   
Sbjct: 1   MDTVCGIDEVGRGPLAGPVVAAAVVLTPGTSLPGLKDSKKLSPEERERLFPLILEAAAAV 60

Query: 83  ISSAS-HQYIDKHNIHKATLDAIYHAVENL------QVIPRSALIDGRSIPEDLPCQAFA 135
               +    +D+ NIH ATL A+  A E L       ++P   +IDGR  P  +   A A
Sbjct: 61  GVGWAWPHEVDRFNIHNATLKAMERAYEMLIQKLSPSLVPTEVVIDGRHAPPSITH-ARA 119

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           V+K DS    + AASI+AKV RD  M+I H+  P+Y F  H GYPT  H++ I   G   
Sbjct: 120 VVKADSFVPEVMAASIVAKVFRDEWMKIYHRFLPEYTFSQHKGYPTRLHRERILTIGSCP 179

Query: 196 IHRLTF 201
           IHR TF
Sbjct: 180 IHRRTF 185


>gi|315185664|gb|EFU19432.1| RNase HII [Spirochaeta thermophila DSM 6578]
          Length = 193

 Score =  181 bits (460), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 81/186 (43%), Positives = 106/186 (56%), Gaps = 8/186 (4%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82
           M  V GIDEVGRG LAGPVV AA++L P     G+ DSKK+S ++RE L+  I  +A   
Sbjct: 1   MDTVCGIDEVGRGPLAGPVVAAAVVLTPGTSLPGLKDSKKLSPEERERLFPLIQEAAAAV 60

Query: 83  ISSAS-HQYIDKHNIHKATLDAIYHAVENL------QVIPRSALIDGRSIPEDLPCQAFA 135
               +    +D+ NIH ATL A+  A E L       ++P   +IDGR  P  +   A A
Sbjct: 61  GVGWAWPHEVDRLNIHNATLKAMERAYEMLIQKLSPSLVPTEVVIDGRHAPPSITH-ARA 119

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           V+K D+    + AASI+AKV RD  M+I H+  P+Y F  H GYPT  H++ I   G   
Sbjct: 120 VVKADTFVPEVMAASIVAKVFRDEWMKIYHRFLPEYTFSQHKGYPTRLHRERILTIGSCP 179

Query: 196 IHRLTF 201
           IHR TF
Sbjct: 180 IHRRTF 185


>gi|309811499|ref|ZP_07705281.1| ribonuclease HII [Dermacoccus sp. Ellin185]
 gi|308434550|gb|EFP58400.1| ribonuclease HII [Dermacoccus sp. Ellin185]
          Length = 233

 Score =  181 bits (459), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 96/225 (42%), Gaps = 37/225 (16%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-----------AAIILDPNNIPFGIN 58
           P   LE  +       VAG+DEVGRGALA                AA     + +P G+ 
Sbjct: 6   PTLRLERQLLRTGYTLVAGMDEVGRGALA-----GPVSVGVSVVDAAT----STVPQGVK 56

Query: 59  DSKKISHKKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117
           DSK +   KR +L  ++   A+   +  AS   ID   + +A   A   A+  L V P  
Sbjct: 57  DSKLVPEPKRPDLARRVRRWALDGAVGHASPTEIDALGMTRALRLAGTRALAQLSVRPDV 116

Query: 118 ALIDGRSI---------------PEDLP-CQAFAVIKGDSISLSIAAASIIAKVTRDRLM 161
            ++DG+                 PE  P       IK D    S+A AS++AKV RD +M
Sbjct: 117 VILDGKHDWLSEPETVGLLGLLEPESAPTWHVVTQIKADMRCSSVAGASLLAKVERDAMM 176

Query: 162 RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
             A + +P YG+  + GY    H   I   G   +HR +++  R+
Sbjct: 177 VDAARDHPVYGWGINKGYSAPDHLAAIAAHGACDLHRRSWKTFRD 221


>gi|184200715|ref|YP_001854922.1| ribonuclease HII [Kocuria rhizophila DC2201]
 gi|183580945|dbj|BAG29416.1| ribonuclease HII [Kocuria rhizophila DC2201]
          Length = 266

 Score =  181 bits (459), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 104/230 (45%), Gaps = 37/230 (16%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD--------------PNNIP 54
           RP  +LE  +       VAG+DEVGRGALAGP  V  ++LD              P+  P
Sbjct: 32  RPGLDLETELASSGARFVAGMDEVGRGALAGPASVGLVVLDVPRLLAGSGHDAAAPDPAP 91

Query: 55  ------FGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHA 107
                  G+ DSK +S  +R  L  ++ + A   ++  A    ID   I  A   A   A
Sbjct: 92  VSVPAWDGVRDSKALSAARRAVLAPRVATWAAGTAVGHAQPHEIDALGITAALRLAGLRA 151

Query: 108 VENL---QVIPRSALIDGRS-------------IPEDLPCQAFAVIKGDSISLSIAAASI 151
           +  +        + ++DG                P  LP     ++K D+  +S+AAASI
Sbjct: 152 LAAVTSGGTPVDALILDGSHNWLEAPAVLGQEEDPVALPPVVRTLVKADARCVSVAAASI 211

Query: 152 IAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +AKV RD +M    +++P Y + ++ GY +A H+  +   G +  HR ++
Sbjct: 212 VAKVERDAIMVELGQEHPAYEWGANKGYGSAAHRAALVTHGTTRHHRRSW 261


>gi|297156716|gb|ADI06428.1| ribonuclease HII [Streptomyces bingchenggensis BCW-1]
          Length = 243

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 74/202 (36%), Positives = 107/202 (52%), Gaps = 2/202 (0%)

Query: 8   ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           E P   +E  +R       V GIDEVGRGA AGPV V A +      P G+ DSK +S K
Sbjct: 14  EPPTHRVERSLRATTGAKIVVGIDEVGRGAWAGPVTVCAAVTGLRRPPAGLTDSKLLSPK 73

Query: 67  KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           KR  L +++ +     ++  AS + ID   +  A   A   A++ L V P + ++DG+  
Sbjct: 74  KRTALAQELETWVTSYALGHASPEEIDALGMTAALRLAATRALDGLPVRPDAVILDGKHD 133

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
               P +   VIKGD   +++AAAS+IAKV RD LM      + D+ F  + GYP+  H+
Sbjct: 134 YLGKPWKVRTVIKGDQSCVAVAAASVIAKVRRDTLMAELGAAHADFRFGDNAGYPSPAHR 193

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
             + E GP+  HRL++  L  L
Sbjct: 194 AALTELGPTPYHRLSWAYLDGL 215


>gi|315226326|ref|ZP_07868114.1| ribonuclease HII 2 [Parascardovia denticolens DSM 10105]
 gi|315120458|gb|EFT83590.1| ribonuclease HII 2 [Parascardovia denticolens DSM 10105]
          Length = 250

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 108/230 (46%), Gaps = 36/230 (15%)

Query: 10  PHFELEAMVRE----KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDS 60
           P +++E  + +    +    + G DEVGRG LAGPV+V A +    +IP      G+ DS
Sbjct: 22  PSWQVEEALLQEADDRRPQWIIGCDEVGRGCLAGPVMVGACLFRAEDIPLLPIPAGLKDS 81

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKAT---------------LDAI 104
           K ++ KKRE L + + + A   ++ S  ++ ID + I +A                + A 
Sbjct: 82  KLLTPKKRESLLDPLRAWAAGTAVGSCDNRGIDSYGIMEALGAAAIQAIDQAVFGLIGAG 141

Query: 105 YHAVENLQVIPRSA-------LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTR 157
                 L              L     I  D       V+KGD     +A AS+IAKVTR
Sbjct: 142 DRVAVILDGPYDYISPAFRSLLAPQARIDPD-DMTVTTVVKGDRRCACVAGASVIAKVTR 200

Query: 158 DRLMRIAHKKYPD---YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           DR M     ++P+   Y +  + GY +A+H++ IKE+GPS  HRL++  +
Sbjct: 201 DRYMVDLADRHPEWEAYAWRKNKGYGSAEHREAIKEQGPSPYHRLSWHLV 250


>gi|294786711|ref|ZP_06751965.1| ribonuclease HII [Parascardovia denticolens F0305]
 gi|294485544|gb|EFG33178.1| ribonuclease HII [Parascardovia denticolens F0305]
          Length = 240

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 108/230 (46%), Gaps = 36/230 (15%)

Query: 10  PHFELEAMVRE----KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDS 60
           P +++E  + +    +    + G DEVGRG LAGPV+V A +    +IP      G+ DS
Sbjct: 12  PSWQVEEALLQEADDRRPQWIIGCDEVGRGCLAGPVMVGACLFRAEDIPLLPIPAGLKDS 71

Query: 61  KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKAT---------------LDAI 104
           K ++ KKRE L + + + A   ++ S  ++ ID + I +A                + A 
Sbjct: 72  KLLTPKKRESLLDPLRAWAAGTAVGSCDNRGIDSYGIMEALGAAAIQAIDQAVFGLIGAG 131

Query: 105 YHAVENLQVIPRSA-------LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTR 157
                 L              L     I  D       V+KGD     +A AS+IAKVTR
Sbjct: 132 DRVAVILDGPYDYISPAFRSLLAPQARIDPD-DMTVTTVVKGDRRCACVAGASVIAKVTR 190

Query: 158 DRLMRIAHKKYPD---YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           DR M     ++P+   Y +  + GY +A+H++ IKE+GPS  HRL++  +
Sbjct: 191 DRYMVDLADRHPEWEAYAWRKNKGYGSAEHREAIKEQGPSPYHRLSWHLV 240


>gi|313680749|ref|YP_004058488.1| RNAse HII [Oceanithermus profundus DSM 14977]
 gi|313153464|gb|ADR37315.1| RNase HII [Oceanithermus profundus DSM 14977]
          Length = 197

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 98/203 (48%), Gaps = 28/203 (13%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-----------INDSKK 62
           LE     + +  VAG+DE GRG                                  DSK+
Sbjct: 2   LEREFWRQGLR-VAGVDEAGRG-------------ALAGPVVAAAVVLAPGRHPYRDSKR 47

Query: 63  ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           ++ ++RE+L + +   A+   + + S   +D+  + +AT  A   A+  L++ P++ + D
Sbjct: 48  LTPRRREQLLDHLQRHALAWGVGACSAAEVDRLGVLRATHCAAQRALARLRIAPQALVTD 107

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
              +  +LP    A  + ++ S S+AAASI+AKV RDR+M   H++YP YGF  H GY T
Sbjct: 108 YLFLETELPL--LAPARAEAQSPSVAAASILAKVVRDRIMVGLHRRYPGYGFARHKGYGT 165

Query: 182 AKHQQVIKEKGPSCIHRLTFRPL 204
           A+H   +   GP   HR  F P+
Sbjct: 166 AEHLACLARLGPCPQHRRRFAPV 188


>gi|270700822|ref|ZP_06223058.1| ribonuclease HII [Haemophilus influenzae HK1212]
 gi|270315846|gb|EFA27947.1| ribonuclease HII [Haemophilus influenzae HK1212]
          Length = 137

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/132 (42%), Positives = 80/132 (60%), Gaps = 1/132 (0%)

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
              A+  ++  A    ID+ NI +A+L A+  AV++L++ P   L+DG  IP+DL   A 
Sbjct: 1   KEKALAWALGRAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQ 60

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
           AV+KGDSI   I+AASI+AKV RD+ M    K+YP+Y F  H GYPT  H + + E G  
Sbjct: 61  AVVKGDSIVAEISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAEFGTL 120

Query: 195 CIHRLTFRPLRN 206
             HR +F P++ 
Sbjct: 121 PQHRRSFAPVKK 132


>gi|254391049|ref|ZP_05006257.1| ribonuclease HII [Streptomyces clavuligerus ATCC 27064]
 gi|294815520|ref|ZP_06774163.1| Ribonuclease [Streptomyces clavuligerus ATCC 27064]
 gi|326443870|ref|ZP_08218604.1| ribonuclease HII [Streptomyces clavuligerus ATCC 27064]
 gi|197704744|gb|EDY50556.1| ribonuclease HII [Streptomyces clavuligerus ATCC 27064]
 gi|294328119|gb|EFG09762.1| Ribonuclease [Streptomyces clavuligerus ATCC 27064]
          Length = 235

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 76/202 (37%), Positives = 113/202 (55%), Gaps = 2/202 (0%)

Query: 8   ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           E P   +E  +R +     +AG+DEVGRGA AGPV V A I      P G+ DSK IS +
Sbjct: 4   EPPTHTVERSIRARTGARIIAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLISPR 63

Query: 67  KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R+EL  ++       ++  AS Q ID   +  A   A   A++ L V P + ++DG+  
Sbjct: 64  RRDELAAELERWVTAHALGHASPQEIDDLGMTAALRLAACRALDGLPVRPEAVILDGKHD 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
               P     VIKGD   +++AAAS+IAKV RD LM    +++ D+ F  + GYP+  H+
Sbjct: 124 YLGAPWTVRTVIKGDRSCVAVAAASVIAKVRRDALMAELPQEFADFAFADNAGYPSPVHK 183

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
            V++E+GP+  HRL++  L  L
Sbjct: 184 AVLEERGPTPYHRLSWAYLDAL 205


>gi|309790097|ref|ZP_07684670.1| ribonuclease H [Oscillochloris trichoides DG6]
 gi|308227822|gb|EFO81477.1| ribonuclease H [Oscillochloris trichoides DG6]
          Length = 207

 Score =  178 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 73/211 (34%), Positives = 102/211 (48%), Gaps = 27/211 (12%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII---------------LDPNNIP 54
           P    E     +     AGIDE GRG                               ++ 
Sbjct: 3   PTITHEQAWHARGYSNCAGIDEAGRGCW----------AGPVVAAAVVLAPSVFQQPDLL 52

Query: 55  FGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQV 113
            G+NDSK++    R  L+ +I   A+ + +       ID + I  AT  A+  A+ +L  
Sbjct: 53  AGVNDSKQLDAATRGRLFGQIHHYALGVGVGIVPAYLIDAYGIVPATRLAMLSALLSLPC 112

Query: 114 IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173
              + LID  ++P DL     A+IKGD+ SLSIAAAS++AKVTRD LM+ A   +P YGF
Sbjct: 113 RVDALLIDALTLP-DLSLPQEALIKGDARSLSIAAASVVAKVTRDHLMQTADHVFPGYGF 171

Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            +H GY TA HQ+ +   G   +HR TF+PL
Sbjct: 172 AAHKGYGTAAHQRALAIHGSCALHRRTFQPL 202


>gi|78211866|ref|YP_380645.1| RNase HII [Synechococcus sp. CC9605]
 gi|97189422|sp|Q3AMU2|RNH2_SYNSC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|78196325|gb|ABB34090.1| Ribonuclease H [Synechococcus sp. CC9605]
          Length = 199

 Score =  178 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 77/187 (41%), Positives = 107/187 (57%), Gaps = 7/187 (3%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81
           VAG+DEVGRG L GPV  AA++L+ +     +  G+ DSKK+S K+R  L   I S  + 
Sbjct: 13  VAGVDEVGRGCLFGPVFAAAVVLEGSAAECLLKAGLTDSKKLSAKRRAALVPLIQSLCVA 72

Query: 82  S-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
           S +  AS + ID   I  AT  A+  A++ L   P   L+DG             VI GD
Sbjct: 73  SALGQASAREIDACGIRVATERAMLRALQRLPQSPGLVLVDGNLPLRLWHGPQRTVIAGD 132

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           S S +IAAAS++AK  RD L+R    ++P YG + H GY TA+H+Q + + GP+ +HR T
Sbjct: 133 SRSAAIAAASVLAKEARDALIRRLSARFPGYGLERHAGYGTAQHRQSLIDSGPTPLHRHT 192

Query: 201 FRPLRNL 207
           F  L+ L
Sbjct: 193 F--LKRL 197


>gi|149004282|ref|ZP_01829059.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS69]
 gi|147757776|gb|EDK64790.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS69]
          Length = 134

 Score =  178 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 56/129 (43%), Positives = 82/129 (63%), Gaps = 2/129 (1%)

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
           I I    +Q ID+ NI++AT  A+  A+  L   P   LID   +  DLP    ++IKGD
Sbjct: 3   IGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLPISQTSIIKGD 60

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           + SLSIAAASI+AKVTRD LM+   +++P Y F ++ GY TAKH + + + G + IHR +
Sbjct: 61  ANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTKLGVTPIHRTS 120

Query: 201 FRPLRNLSV 209
           F P+++L +
Sbjct: 121 FEPVKSLVL 129


>gi|325832929|ref|ZP_08165602.1| ribonuclease HII [Eggerthella sp. HGA1]
 gi|325485794|gb|EGC88258.1| ribonuclease HII [Eggerthella sp. HGA1]
          Length = 262

 Score =  177 bits (451), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 72/195 (36%), Positives = 106/195 (54%), Gaps = 7/195 (3%)

Query: 12  FELEAMVR-EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           +  E  +  E+    + G+DEVGRG LAGP+ V A++L       G+NDSK++  + RE 
Sbjct: 60  YAFERALAAERGDGVIVGLDEVGRGPLAGPLAVGAVVLPSEPFIEGLNDSKQVKPEARER 119

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAV---ENLQVIPRSALIDGRSIP 126
           +  ++ + A+  ++       ID   +  +   A   A+   E + V P   L+DG   P
Sbjct: 120 IAVQVKAVAVAWTVEYVEASDIDACGMTASLALAFRRAIRRIEEVGVRPDVVLLDGN--P 177

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             L  +   V+KGD    SIAAASI+AKV RD LM    ++YP+YGFD+  GY +A H +
Sbjct: 178 MRLDEREVNVVKGDGKCASIAAASIVAKVERDALMCRYAEEYPEYGFDACKGYASAAHIE 237

Query: 187 VIKEKGPSCIHRLTF 201
            IK  G + IHR TF
Sbjct: 238 AIKRYGLTPIHRATF 252


>gi|46200090|ref|YP_005757.1| ribonuclease HII [Thermus thermophilus HB27]
 gi|73917834|sp|Q72GR0|RNH2_THET2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|46197718|gb|AAS82130.1| ribonuclease HII [Thermus thermophilus HB27]
          Length = 203

 Score =  177 bits (451), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 72/200 (36%), Positives = 102/200 (51%), Gaps = 22/200 (11%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--------PFGINDSKKISH 65
           LEA    K +  VAG+DE GRGA A           P  +         +   DSK +S 
Sbjct: 6   LEAPFWRKGL-LVAGLDEAGRGAWA----------GPIVVGVVVLPPGEYPFRDSKLLSP 54

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           + RE L EK+   A+  ++  A    +D+  + KATL A   A+ +L + P + + D   
Sbjct: 55  RARERLAEKVKEVALAFALGVAEAAEVDRLGVLKATLLAAERALLSLPLAPEALVTDYLP 114

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
           +P  LP  +    K D  S ++AAASI+AKV RDR+M    + YP YGF  H GY T +H
Sbjct: 115 LPTPLPLLSPP--KADEKSPTVAAASILAKVHRDRIMAELDRLYPGYGFARHKGYGTPEH 172

Query: 185 QQVIKEKGPSCIHRLTFRPL 204
           Q+ +   GPS +HR  F P+
Sbjct: 173 QEALLALGPSPVHRKRFAPV 192


>gi|302542045|ref|ZP_07294387.1| ribonuclease HII [Streptomyces hygroscopicus ATCC 53653]
 gi|302459663|gb|EFL22756.1| ribonuclease HII [Streptomyces himastatinicus ATCC 53653]
          Length = 233

 Score =  177 bits (450), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 72/202 (35%), Positives = 109/202 (53%), Gaps = 2/202 (0%)

Query: 8   ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           + P   +E  +R       V G+DEVGRGA AGPV V A +      P G+ DSK +S K
Sbjct: 4   QPPTHSVERSLRATTGAKIVVGVDEVGRGAWAGPVTVCAAVTGLRRPPTGLTDSKLLSPK 63

Query: 67  KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R EL  ++ S     ++  +S + ID   +  A   A   A+E L V P + ++DG+  
Sbjct: 64  RRTELAHELESWVTAHALGHSSPEEIDDLGMTAALRLAATRALEGLPVRPDAVILDGKHD 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
               P +   VIKGD   +++AAAS+IAKV RD LM      + D+ F  + GYP+  H+
Sbjct: 124 YLGAPWRVRTVIKGDQSCVAVAAASVIAKVRRDALMAELGGAHADFRFGDNAGYPSPVHR 183

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
             ++++GP+  HRL++  L  L
Sbjct: 184 AALRDQGPTPHHRLSWAYLDGL 205


>gi|119025252|ref|YP_909097.1| ribonuclease HII [Bifidobacterium adolescentis ATCC 15703]
 gi|118764836|dbj|BAF39015.1| ribonuclease [Bifidobacterium adolescentis ATCC 15703]
          Length = 264

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 106/240 (44%), Gaps = 43/240 (17%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--------DPNNIPFG 56
           S+   P  ++E  +       + G DEVGRG+LAGPV+V A  +         P  +P G
Sbjct: 28  SVSIVPTLDMERAIAASGYDVIVGFDEVGRGSLAGPVMVGAAAIRTCDLSGPSPLAVPDG 87

Query: 57  INDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP 115
           + DSK ++  +RE ++E++ S  A  ++ SAS+  ID   I  A   A   A   L    
Sbjct: 88  VADSKMLTEHRREAIFEELKSWCASWAVGSASNTEIDDWGISYALGVAALRA---LSEAE 144

Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIA---------------------- 153
               IDG  + +  P +  A++ G +  ++ A  +  A                      
Sbjct: 145 TRLGIDGNGLLDGRPVKVGAILDGPNDYITKALNTFDAPDVPVPAEVSTKVKGDRYCATV 204

Query: 154 -------KVTRDRLMRIAHKK--YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
                  KVTRDRLM     +  Y  Y +  + GY +A H+  I E GPS +HRL++  +
Sbjct: 205 ATAAVIAKVTRDRLMVELGAQPQYEPYEWAHNKGYGSAAHRDAIAEFGPSDLHRLSWHLV 264


>gi|289644815|ref|ZP_06476868.1| Ribonuclease H [Frankia symbiont of Datisca glomerata]
 gi|289505371|gb|EFD26417.1| Ribonuclease H [Frankia symbiont of Datisca glomerata]
          Length = 208

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/181 (38%), Positives = 105/181 (58%), Gaps = 4/181 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREELYEKITSSA-IISI 83
           AG+DE GRGA AGP+VVAA++L  N       + DSK++S + RE+++++I S A   + 
Sbjct: 2   AGVDEAGRGACAGPLVVAAVVLPANGSRRLVDLADSKRLSPRLREQVFDEILSVAQAWAT 61

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
                  ID   +H A +  +  AV  L   P   L DG ++P  L   + AV+KGD + 
Sbjct: 62  VVIQSSEIDACGVHVANIAGMRRAVARLGRRPGYVLTDGFAVP-GLGVASTAVLKGDQVV 120

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             +AAAS++AKVTRDR+M+  H ++P+Y F  H GY TA H   +   GP   HR+++  
Sbjct: 121 ACVAAASVVAKVTRDRIMKDLHHRHPEYDFAQHKGYVTAGHAAALSAYGPCEQHRMSYVN 180

Query: 204 L 204
           +
Sbjct: 181 V 181


>gi|257791157|ref|YP_003181763.1| Ribonuclease H [Eggerthella lenta DSM 2243]
 gi|257475054|gb|ACV55374.1| Ribonuclease H [Eggerthella lenta DSM 2243]
          Length = 262

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 72/195 (36%), Positives = 105/195 (53%), Gaps = 7/195 (3%)

Query: 12  FELEAMVR-EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           +  E  +  E+    + G+DEVGRG LAGP+ V A++L       G+NDSK++  + RE 
Sbjct: 60  YAFERALAAERGDGVIVGLDEVGRGPLAGPLAVGAVVLPSEPFIEGLNDSKQVKPEARER 119

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAV---ENLQVIPRSALIDGRSIP 126
           +  ++ + A+  ++       ID   +  +   A   A+   E   V P   L+DG   P
Sbjct: 120 IAVQVKAVAVAWTVEYVEASDIDACGMTASLALAFRRAIRRIEEAGVRPDVVLLDGN--P 177

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             L  +   V+KGD    SIAAASI+AKV RD LM    ++YP+YGFD+  GY +A H +
Sbjct: 178 MRLDEREVNVVKGDGKCASIAAASIVAKVERDALMCRYAEEYPEYGFDACKGYASAAHIE 237

Query: 187 VIKEKGPSCIHRLTF 201
            IK  G + IHR TF
Sbjct: 238 AIKRYGLTPIHRATF 252


>gi|50955107|ref|YP_062395.1| ribonuclease HII [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951589|gb|AAT89290.1| ribonuclease HII [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 226

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/207 (35%), Positives = 103/207 (49%), Gaps = 12/207 (5%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKIS 64
           P  P    E  +  + +  +  +DEVGRGALAGPV V  +++D     IP G+ DSK +S
Sbjct: 3   PVTPSLRFEKALYRQGVTSIVAVDEVGRGALAGPVAVGMVVIDTAVKRIPLGLRDSKLLS 62

Query: 65  HKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQ-----VIPRSA 118
              RE L       ++  ++  AS   +D+H I +    A   A   L+     V   + 
Sbjct: 63  EPAREALEPACRRWSLFHAVGLASADEVDRHGIMRCLGLAGARAFAVLEEQGAPVHDSAL 122

Query: 119 LIDGR----SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174
           ++DG     ++    P +    +K D    S+AAAS+IAKV RDRLM       P YG+ 
Sbjct: 123 ILDGNYDYLTLALTRPARVVTRVKADRDCASVAAASVIAKVHRDRLMIEHDADDPGYGWA 182

Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           S+ GY T  H   I E GPS IHRLT+
Sbjct: 183 SNKGYSTPGHFAAIAELGPSAIHRLTW 209


>gi|154486645|ref|ZP_02028052.1| hypothetical protein BIFADO_00464 [Bifidobacterium adolescentis
           L2-32]
 gi|154084508|gb|EDN83553.1| hypothetical protein BIFADO_00464 [Bifidobacterium adolescentis
           L2-32]
          Length = 238

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 106/240 (44%), Gaps = 43/240 (17%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--------DPNNIPFG 56
           S+   P  ++E  +       + G DEVGRG+LAGPV+V A  +         P  +P G
Sbjct: 2   SVSIVPTLDMERAIAASGYDVIVGFDEVGRGSLAGPVMVGAAAIRTCDLAGSSPLQVPDG 61

Query: 57  INDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP 115
           + DSK ++  +RE ++E++ S  A  ++ SAS+  ID   I  A   A   A   L    
Sbjct: 62  VADSKMLTEHRREAIFEELKSWCASWAVGSASNTEIDDWGISYALGIAALRA---LGQAE 118

Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIA---------------------- 153
               IDG  + +  P +  A++ G +  ++ A  +  A                      
Sbjct: 119 EKLGIDGDGMLDGKPVKVGAILDGPNDYITKALNTFDAPDVPVPAEVSTKVKGDRYCATV 178

Query: 154 -------KVTRDRLMRIAHKK--YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
                  KVTRDRLM     +  Y  Y +  + GY +A H+  I E GPS +HRL++  +
Sbjct: 179 ATAAVIAKVTRDRLMVELGAQPQYEPYEWAHNKGYGSAAHRDAIAEFGPSDLHRLSWHLV 238


>gi|302537359|ref|ZP_07289701.1| ribonuclease HII [Streptomyces sp. C]
 gi|302446254|gb|EFL18070.1| ribonuclease HII [Streptomyces sp. C]
          Length = 236

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 72/205 (35%), Positives = 111/205 (54%), Gaps = 5/205 (2%)

Query: 8   ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           E P   +E  +R       +AG+DEVGRGA AGPV V A I      P G+ DSK ++ K
Sbjct: 4   EAPTHTVERSLRATTGAKVIAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLLTPK 63

Query: 67  KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R+ L E +       ++  AS + ID+  +  A   A   A+E L + P + ++DG+  
Sbjct: 64  RRDALLEVLEDWVTAHALGHASPEEIDELGMTAALRLAAVRALEALPMRPDAVILDGKHD 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK---YPDYGFDSHVGYPTA 182
               P +   VIKGD   +++AAAS+IAKV RDR+M    +      D+ F ++ GYP+ 
Sbjct: 124 YLGPPWRVRTVIKGDQSCIAVAAASVIAKVRRDRMMAGLGEPGDGVADFAFAANAGYPSP 183

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207
            H+  ++ +GP+  HRL++  L  L
Sbjct: 184 VHRAALEVRGPTAYHRLSWSYLDAL 208


>gi|326333667|ref|ZP_08199904.1| ribonuclease HII [Nocardioidaceae bacterium Broad-1]
 gi|325948573|gb|EGD40676.1| ribonuclease HII [Nocardioidaceae bacterium Broad-1]
          Length = 218

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 94/204 (46%), Gaps = 21/204 (10%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKREELYEKITS 77
              +  +  +DEVGRGAL GPV +  +++       P G+ DSK ++ + RE L  K+  
Sbjct: 3   RDGITHLGAVDEVGRGALCGPVSIGIVVISAATRTAPQGVRDSKLLTPEARETLAPKVRR 62

Query: 78  SAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC----- 131
            A+  ++  A    ID+  I  A   A   A+  L V P + L+DG       P      
Sbjct: 63  WAVDSAVGHALASEIDEVGIMAAMRLAGQRALSALDVRPDALLLDGNHNYLTPPAQEGLF 122

Query: 132 -------------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
                            +IK D    ++AAASI+AK +RD LM   H++YPDY +  + G
Sbjct: 123 GEVSAMVEEIEVPPVTTMIKADMKCAAVAAASILAKTSRDALMVALHEEYPDYAWADNKG 182

Query: 179 YPTAKHQQVIKEKGPSCIHRLTFR 202
           Y    H   ++  GPS  HR ++ 
Sbjct: 183 YSAPAHIAALERLGPSAYHRRSWS 206


>gi|291277271|ref|YP_003517043.1| ribonuclease HII [Helicobacter mustelae 12198]
 gi|290964465|emb|CBG40315.1| ribonuclease HII [Helicobacter mustelae 12198]
          Length = 243

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/192 (31%), Positives = 95/192 (49%), Gaps = 11/192 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG+L G + V+ +    +        GI DSKK +   R+ L   +  +  I
Sbjct: 48  LCGIDEAGRGSLCGSLFVSGVACTKDLAQMLQIQGIKDSKKTTKNTRKNLANLLIHTPGI 107

Query: 82  S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136
              I   + + ID+  +     + +   ++NLQ      ++DG +        P     +
Sbjct: 108 HFCIIEKTAKEIDEKGLSCCMRECLQSIIKNLQSFTSHFIMDGNTTFGFHPPPPLYLKTL 167

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           IKGD++   I+AAS++AK  +D  M    K YP+YGF SH GY T+ H   IK  GP+  
Sbjct: 168 IKGDALLPQISAASVLAKYAKDCEMMHLDKIYPNYGFASHSGYGTSAHIAQIKALGPTKE 227

Query: 197 HRLTFRPLRNLS 208
           HR  F  L++L+
Sbjct: 228 HRRNF--LKDLT 237


>gi|78779978|ref|YP_398090.1| RNase HII [Prochlorococcus marinus str. MIT 9312]
 gi|97189158|sp|Q318P1|RNH2_PROM9 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|78713477|gb|ABB50654.1| RNase HII [Prochlorococcus marinus str. MIT 9312]
          Length = 205

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 69/180 (38%), Positives = 98/180 (54%), Gaps = 5/180 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-SAII 81
            GIDEVGRGA+ GPV  A ++L   N      FG+ DSKK++ KKR+ L  KI   S+  
Sbjct: 19  VGIDEVGRGAVFGPVFSAVVVLTEKNKFILKQFGVKDSKKLTPKKRKLLLPKILLLSSDY 78

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
            I  +S + ID   I  AT  ++  A++ L+  P   ++DG  +          ++ GDS
Sbjct: 79  GIGQSSAREIDMLGIRVATELSMIRALKKLKEKPSEIIVDGPLLLRPWKGIQKNIVSGDS 138

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
              +IA+ASI+AKV RD LM    KKY  Y    + GY T +H   IK+ G + +HR +F
Sbjct: 139 KITAIASASIVAKVARDNLMERLEKKYSGYLIFKNKGYGTREHFSNIKKNGITNLHRKSF 198


>gi|118475400|ref|YP_891226.1| ribonuclease HII [Campylobacter fetus subsp. fetus 82-40]
 gi|118414626|gb|ABK83046.1| ribonuclease HII [Campylobacter fetus subsp. fetus 82-40]
          Length = 189

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 8/183 (4%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSS 78
           M  + GIDE GRGALAG +VVA  +  P      I  G++DSKK++ +KREE++  +   
Sbjct: 1   MAKICGIDEAGRGALAGELVVAGCVFKPKFKKEIIKLGLSDSKKLTEQKREEIFLNLEKM 60

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           +   +    +  +DK  +      A+   V  +     + + DG         +   ++K
Sbjct: 61  SDYLVVYFRNTIVDKIGLSDCLRRALN--VIKMHFNECNFIYDGNCDYGVKNIK--TIVK 116

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
            DS    ++AASIIAKV+RDR MR   K YPD+G+  H GY    H + +K+ G + + R
Sbjct: 117 ADSSVPQVSAASIIAKVSRDRQMRRFDKIYPDFGYAKHKGYGVKAHIEALKQHGSNELTR 176

Query: 199 LTF 201
           L+F
Sbjct: 177 LSF 179


>gi|126697031|ref|YP_001091917.1| ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9301]
 gi|166226635|sp|A3PEZ1|RNH2_PROM0 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|126544074|gb|ABO18316.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9301]
          Length = 205

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 69/180 (38%), Positives = 99/180 (55%), Gaps = 5/180 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-SAII 81
            GIDEVGRG++ GPV  A + L   N       G+ DSKK++ KKR+ L  KI   S+  
Sbjct: 19  VGIDEVGRGSIFGPVFSAVVELTEKNKFTLKKLGVTDSKKLTPKKRKLLLPKILLLSSDY 78

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141
            I  +S + IDK  I  AT  ++  A++ L+  P   L+DG  +          +  GDS
Sbjct: 79  GIGQSSAREIDKLGIRVATELSMIRALKKLKKKPSELLVDGPLLLRPWKGTQKNIESGDS 138

Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             +SIA+ASI+AKV+RD LM    +KY  Y    + GY T +H  +IK+ G + +HR +F
Sbjct: 139 KFISIASASIVAKVSRDNLMVRLERKYSGYLIFKNKGYGTREHLSLIKKNGITKLHRKSF 198


>gi|254527238|ref|ZP_05139290.1| ribonuclease HII [Prochlorococcus marinus str. MIT 9202]
 gi|221538662|gb|EEE41115.1| ribonuclease HII [Prochlorococcus marinus str. MIT 9202]
          Length = 205

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 74/209 (35%), Positives = 113/209 (54%), Gaps = 10/209 (4%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSK 61
           + E+   +L+  + + +     GIDEVGRGA+ GPV  A ++L   N       G+ DSK
Sbjct: 1   MQEKKEEDLQQALNKVSE---VGIDEVGRGAIFGPVFSAVVVLTEKNKFLLKQLGVKDSK 57

Query: 62  KISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K++ KKR+ L  KI   S+   I  +S + ID   I  AT  ++  A++ L+  P   ++
Sbjct: 58  KLTPKKRKFLVPKILLLSSDYGIGQSSVKEIDNLGIRVATELSMIRALKKLKEKPSELIV 117

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DG  +          ++ GDS  +SIA+ASIIAKV+RD LM    KKY  Y    + GY 
Sbjct: 118 DGPLLLRPWSGTQKNIVSGDSKFISIASASIIAKVSRDNLMMKLEKKYSGYLIFKNKGYG 177

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209
           T +H  +IK  G + +HR +F  L+ L++
Sbjct: 178 TREHLSLIKRNGVTNLHRKSF--LKKLNL 204


>gi|317488112|ref|ZP_07946688.1| ribonuclease HII [Eggerthella sp. 1_3_56FAA]
 gi|316912784|gb|EFV34317.1| ribonuclease HII [Eggerthella sp. 1_3_56FAA]
          Length = 262

 Score =  175 bits (444), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 71/195 (36%), Positives = 104/195 (53%), Gaps = 7/195 (3%)

Query: 12  FELEAMVRE-KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70
           +  E  +   +    + G+DEVGRG LAGP+ V A++L       G+NDSK++  + RE 
Sbjct: 60  YAFERALAAGRGDGVIVGLDEVGRGPLAGPLAVGAVVLPAEPFIEGLNDSKQVKPEVRER 119

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAV---ENLQVIPRSALIDGRSIP 126
           +  ++ + A+  ++       ID   +  +   A   A+   E   V P   L+DG   P
Sbjct: 120 IAVQVKAVAVAWTVEYVEASDIDACGMTASLALAFRRAIRRIEEAGVRPDVVLLDGN--P 177

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             L  +   V+KGD    SIAAASI+AKV RD LM    ++YP+YGFD+  GY +A H +
Sbjct: 178 MRLDEREVNVVKGDGKCASIAAASIVAKVERDALMCRYAEEYPEYGFDACKGYASAAHIE 237

Query: 187 VIKEKGPSCIHRLTF 201
            IK  G + IHR TF
Sbjct: 238 AIKRYGLTPIHRATF 252


>gi|163839835|ref|YP_001624240.1| ribonuclease HII [Renibacterium salmoninarum ATCC 33209]
 gi|162953311|gb|ABY22826.1| ribonuclease HII [Renibacterium salmoninarum ATCC 33209]
          Length = 217

 Score =  175 bits (444), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 65/204 (31%), Positives = 94/204 (46%), Gaps = 23/204 (11%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREELYEKITSSA 79
            +  VAG DEVGRGALAGPV V  +++D +      G+ DSK +S ++RE L   I   A
Sbjct: 4   GIRFVAGADEVGRGALAGPVSVGMVVVDASAQKPLAGVKDSKLLSAQERESLVPLIKHWA 63

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSI---------- 125
           +  ++  AS   ID   +  A   A   A   L    V   + ++DG             
Sbjct: 64  VGHAVGHASAAEIDAGGLTSALRLAGTRAWNQLLAAGVRAETVILDGNHNWLASAQLSIF 123

Query: 126 -------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
                     +       IK D   LS+AAAS++AKV RD ++       P +G+  + G
Sbjct: 124 DTPTADEELGVDVPVQTKIKADLSCLSVAAASVLAKVERDAILIELDAANPQFGWKINKG 183

Query: 179 YPTAKHQQVIKEKGPSCIHRLTFR 202
           Y TA H+  I   G S  HR+++R
Sbjct: 184 YATASHRNAIDLHGASQWHRMSWR 207


>gi|315452719|ref|YP_004072989.1| ribonuclease HII [Helicobacter felis ATCC 49179]
 gi|315131771|emb|CBY82399.1| ribonuclease HII [Helicobacter felis ATCC 49179]
          Length = 195

 Score =  174 bits (442), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 61/186 (32%), Positives = 88/186 (47%), Gaps = 10/186 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG   G + VA +  D N     +   + +SK++S  KR E   +I     I
Sbjct: 2   ILGIDEAGRGCWCGSLFVAGVSCDQNVASAFVRLELKESKQLSRTKRFEFATQIIQDTRI 61

Query: 82  --SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF---AV 136
              + S S   ID   +     +AI   V  L  I +   +DG ++ +          A+
Sbjct: 62  TSVVVSKSAPEIDHKGLSVCMQEAITEIVSKLPTI-KHVRLDGNTLFKLEFAHLESFEAI 120

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           IKGD     IA ASI+AK  +DR M +  ++YP+YGF  H GY T  H   I + G    
Sbjct: 121 IKGDDKIPQIAMASILAKAHKDREMSVLDERYPEYGFARHCGYGTCTHALAIAKYGLIQE 180

Query: 197 HRLTFR 202
           HR +F+
Sbjct: 181 HRKSFK 186


>gi|29469217|gb|AAO65330.1| putative ribonuclease HII [Streptomyces murayamaensis]
          Length = 236

 Score =  174 bits (441), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 75/205 (36%), Positives = 108/205 (52%), Gaps = 5/205 (2%)

Query: 8   ERPHFELEAMVRE-KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66
           E P   +E  +R       +AG+DEVGRGA AGPV V A I      P G+ DSK IS K
Sbjct: 4   EPPTHTVERSIRATTGYKIIAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLISPK 63

Query: 67  KREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +R EL  ++ S     ++  +S Q ID+  +  A   A   A++ L V P + ++DG+  
Sbjct: 64  RRLELAGELESWVTAYALGHSSPQEIDELGMTAALRLAAVRALDGLPVKPEAVILDGKHD 123

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA---HKKYPDYGFDSHVGYPTA 182
               P     VIKGD   +++AAAS+IAKV RD +M        +   +GF  + GYP+ 
Sbjct: 124 YLGDPWWVRTVIKGDQSCVAVAAASVIAKVRRDAMMAELGGAAGECAAFGFADNAGYPSP 183

Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207
            H+  + E GP+  HRL++  L  L
Sbjct: 184 THKTALVEWGPTPYHRLSWSYLDAL 208


>gi|69246757|ref|ZP_00604105.1| Ribonuclease H [Enterococcus faecium DO]
 gi|68195111|gb|EAN09571.1| Ribonuclease H [Enterococcus faecium DO]
          Length = 151

 Score =  174 bits (441), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 56/126 (44%), Positives = 79/126 (62%), Gaps = 2/126 (1%)

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
           I I     Q ID  NI++A+  A+  AVE L ++P   LID  ++  DLP Q   +IKGD
Sbjct: 25  IGIGIVDQQTIDDVNIYEASKLAMIQAVEKLSIVPSYLLIDAMTL--DLPIQQEKIIKGD 82

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           + S+SIAAASIIAKV RD+LM+     YP YGF  + GY T +H + ++ +G + IHR +
Sbjct: 83  ARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGYGTKEHLEGLERQGITPIHRKS 142

Query: 201 FRPLRN 206
           F P++ 
Sbjct: 143 FAPVKK 148


>gi|86742269|ref|YP_482669.1| ribonuclease HII [Frankia sp. CcI3]
 gi|123764526|sp|Q2J702|RNH2_FRASC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|86569131|gb|ABD12940.1| Ribonuclease H [Frankia sp. CcI3]
          Length = 240

 Score =  174 bits (441), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 73/196 (37%), Positives = 109/196 (55%), Gaps = 4/196 (2%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKRE 69
           F  E  +    + PVAG+DE GRGA AGP+V+AA+IL P        + DSK ++ + RE
Sbjct: 15  FGYERALNRHGLGPVAGVDEAGRGACAGPLVIAAVILAPEARQRLARLADSKLLTEQIRE 74

Query: 70  ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
            ++E + ++A   S    S   ID+  +H A +  +  AV  L   P   L DG ++   
Sbjct: 75  SVFEDVMAAAAAWSTVVISAAEIDRVGLHVANITGMRRAVARLSARPGYVLTDGFAV-AG 133

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
              ++ AV+KGD +   +AAAS++AKVTRDR+MR  H +Y +Y F  H GY TA H   +
Sbjct: 134 FGVESLAVVKGDRVVACVAAASVVAKVTRDRIMRALHTRYAEYDFAQHKGYVTAAHAAAL 193

Query: 189 KEKGPSCIHRLTFRPL 204
              GP   HR+++  +
Sbjct: 194 ARCGPCDEHRMSYVNV 209


>gi|317010006|gb|ADU80586.1| ribonuclease HII [Helicobacter pylori India7]
          Length = 204

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 65/188 (34%), Positives = 94/188 (50%), Gaps = 11/188 (5%)

Query: 28  GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAIIS- 82
           GIDE GRG LAG + VA ++         +  G+ DSKK+S KKR  L +KI +   +  
Sbjct: 4   GIDEAGRGCLAGSLFVAGVVCSEKTALEFLKMGLKDSKKLSKKKRFFLEDKIKTHGEMGF 63

Query: 83  -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138
            +   S   ID   +      AI   +EN   +     IDG +   + E  P     +IK
Sbjct: 64  FVVKKSANEIDSLGLGACLKLAIQEILENACSLANEIKIDGNTAFGLNERYP-NIQTIIK 122

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD     IA AS++AK  +DR MR  H  + +YG+D + GY T +H + I + G +  HR
Sbjct: 123 GDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAIIKLGVTPFHR 182

Query: 199 LTFRPLRN 206
            +F  L+N
Sbjct: 183 HSF-TLKN 189


>gi|75764884|ref|ZP_00744243.1| Ribonuclease HII [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74487629|gb|EAO51486.1| Ribonuclease HII [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 167

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 70/167 (41%), Positives = 102/167 (61%), Gaps = 4/167 (2%)

Query: 42  VVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKAT 100
           + AA+      +   + DSKK+S  KRE  Y++I   AI I +   S Q ID  NI++AT
Sbjct: 1   MTAAVSF-QRFLYSRLYDSKKLSEAKRERFYDEIKVQAIAIGVGIVSPQVIDDINIYQAT 59

Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160
             A+  AV  L   P+  LID   +P   P    ++IKGD+ S+SI+AASIIAKVTRDR+
Sbjct: 60  KQAMLDAVAYLSCTPQHLLIDAMKLPT--PIPQTSIIKGDAKSISISAASIIAKVTRDRM 117

Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           M+   +KYP+YGF+ H+GY T +H + I+  G    HR +F P++++
Sbjct: 118 MKELGEKYPEYGFEQHMGYGTKQHLEAIEVHGVLDEHRKSFAPIKDM 164


>gi|284045128|ref|YP_003395468.1| ribonuclease H [Conexibacter woesei DSM 14684]
 gi|283949349|gb|ADB52093.1| Ribonuclease H [Conexibacter woesei DSM 14684]
          Length = 226

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 75/198 (37%), Positives = 106/198 (53%), Gaps = 12/198 (6%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKIS 64
           F  +  +       VAG DE GRG LAGP+V AA++ D   I          +NDSK+ +
Sbjct: 23  FAFDRDL---GARFVAGADEAGRGCLAGPLVAAAVMFDYERITRSDLRALSALNDSKQQT 79

Query: 65  HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123
            ++RE +Y  I   A  +++ S     ID+  +H   L A+  A+  +       L DG 
Sbjct: 80  AERREAIYPVILRVATRVAVISRCAPGIDRRGLHVTNLAALRDALARVACDGCICLSDGF 139

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +  DL     AVI GD+ S SIAAAS++AKVTRDR M  A   +P + F SHVGY T +
Sbjct: 140 RV-ADLGHDQRAVIGGDARSASIAAASVVAKVTRDRFMHRADVLHPGWEFASHVGYATPE 198

Query: 184 HQQVIKEKGPSCIHRLTF 201
           H+  I+  G + +HRL+F
Sbjct: 199 HRAAIERLGITPLHRLSF 216


>gi|170781194|ref|YP_001709526.1| ribonuclease HII [Clavibacter michiganensis subsp. sepedonicus]
 gi|169155762|emb|CAQ00883.1| ribonuclease HII [Clavibacter michiganensis subsp. sepedonicus]
          Length = 219

 Score =  172 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 73/204 (35%), Positives = 103/204 (50%), Gaps = 12/204 (5%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAIILDPNNIPFGINDSKKISHKK 67
           P FE+E  +       V G DEVGRGALAGPV V  AA+  D +  P G+ DSK +S K+
Sbjct: 6   PTFEIEHELLGAGAALVIGCDEVGRGALAGPVAVGMAAVGPDADAFPVGLRDSKMLSEKR 65

Query: 68  REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL------- 119
           RE L+  +++ A   ++  AS + +D   I      A   A+  L  +    L       
Sbjct: 66  REALHPLVSAWAGHSAVGMASAEEVDALGITACLGLAGRRALVELHHLGVPLLDSVVLLD 125

Query: 120 --IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
              D  +     P      +K D    S+AAAS++AKV RDRLM   H++ P+YG+  + 
Sbjct: 126 GSHDWLTPALVHPVPVRLRVKADRDCASVAAASVLAKVHRDRLMAAWHEESPEYGWAGNK 185

Query: 178 GYPTAKHQQVIKEKGPSCIHRLTF 201
           GY +  H  VI+  G S IHR T+
Sbjct: 186 GYGSPAHLDVIRANGASRIHRRTW 209


>gi|219121434|ref|XP_002185941.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209582790|gb|ACI65411.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 194

 Score =  171 bits (435), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 68/195 (34%), Positives = 105/195 (53%), Gaps = 17/195 (8%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSS--- 78
           V G DE G G +AGPVV A+  +  N        G++DSK +S K RE +YE I  +   
Sbjct: 1   VIGSDESGSGCIAGPVVTASCCVRDNAADGLWIDGVDDSKSLSTKDRERIYEAIVQNPSR 60

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVENL---------QVIPRSALIDGRSIPEDL 129
            + SI   S   ID+ +   ATL+    ++E++            P  +++DG   P+  
Sbjct: 61  YLWSIQERSAAEIDEQSATNATLNCFQDSIEDVVSQLRAEYPHCQP-YSIVDGHRSPKVD 119

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
            C +    +GD+   ++A ASI+A+VTRDR M +A  KYP Y FD + GYP+  H +++ 
Sbjct: 120 GCTSRPWKQGDAYVYTVALASILARVTRDRHMALAAVKYPLYDFDRNGGYPSRAHTEILH 179

Query: 190 EKGPSCIHRLTFRPL 204
           + G S IHR + +P+
Sbjct: 180 QHGYSPIHRQSCKPV 194


>gi|237750687|ref|ZP_04581167.1| ribonuclease HII [Helicobacter bilis ATCC 43879]
 gi|229373777|gb|EEO24168.1| ribonuclease HII [Helicobacter bilis ATCC 43879]
          Length = 207

 Score =  171 bits (435), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 58/195 (29%), Positives = 93/195 (47%), Gaps = 14/195 (7%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYE 73
               NM  + GIDE GRG +AG + +A+++LD     +     I DSK+++  +R+E  +
Sbjct: 6   YWAINMALICGIDEAGRGCVAGSLFIASVMLDECYFESFKKLDIRDSKQLTQTQRQERAD 65

Query: 74  KITSS-----AIISISSASHQYIDKHNIHKATLDAIYHAVENLQ-VIPRSALIDGRSIPE 127
            I          + I S     ID   + +     +   + + +    +S + DG +   
Sbjct: 66  SIQEFLREHGGRVKIVSFDSVNIDSKGLGQCMQMGLKELLLHAKKHQCKSIIFDGNT--- 122

Query: 128 DLPCQAF-AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
           +   Q    +IKGDS  + I+AASI+AK  +D  M   H  YP Y   S+ GY T  H +
Sbjct: 123 NFGVQEIDTLIKGDSKHVLISAASILAKTNKDSEMLTLHDLYPQYNLKSNKGYLTKAHIE 182

Query: 187 VIKEKGPSCIHRLTF 201
            I + G S IHR ++
Sbjct: 183 SIAKHGYSPIHRKSY 197


>gi|210135480|ref|YP_002301919.1| ribonuclease HII [Helicobacter pylori P12]
 gi|238056778|sp|B6JNG1|RNH2_HELP2 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|210133448|gb|ACJ08439.1| ribonuclease hII [Helicobacter pylori P12]
          Length = 204

 Score =  171 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 63/190 (33%), Positives = 95/190 (50%), Gaps = 11/190 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG LAG + VA +  +       +  G+ DSKK+S KKR  L +KI +   +
Sbjct: 2   ILGIDEAGRGCLAGSLFVAGVACNDQTALELLKMGLKDSKKLSLKKRFFLEDKIKTHGKV 61

Query: 82  S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136
              +   S   ID   +      AI   +EN + +     IDG +   + +  P     +
Sbjct: 62  KFFVVKKSANEIDNLGLGACLKLAIQEILENNRSLANEIKIDGNTAFGLNKRYP-NIQTI 120

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           IKGD     IA AS++AK  +DR M   H  + +YG+D + GY T +H + I + G +  
Sbjct: 121 IKGDETIAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAITKLGATPF 180

Query: 197 HRLTFRPLRN 206
           HR +F  L+N
Sbjct: 181 HRHSF-TLKN 189


>gi|297520198|ref|ZP_06938584.1| ribonuclease HII [Escherichia coli OP50]
          Length = 128

 Score =  171 bits (433), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 54/123 (43%), Positives = 70/123 (56%), Gaps = 1/123 (0%)

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143
             A    ID+ NI  AT+ A+  AV  L + P   LIDG   P+ LP  + AV+KGDS  
Sbjct: 1   GRAEPYEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSRV 59

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
             I+AASI+AKVTRD  M      +P YGF  H GYPTA H + + E G +  HR +F P
Sbjct: 60  PEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGP 119

Query: 204 LRN 206
           ++ 
Sbjct: 120 VKR 122


>gi|15645936|ref|NP_208115.1| ribonuclease HII [Helicobacter pylori 26695]
 gi|2500560|sp|P56121|RNH2_HELPY RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|2314491|gb|AAD08367.1| ribonuclease HII (rnhB) [Helicobacter pylori 26695]
          Length = 209

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 11/188 (5%)

Query: 28  GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAIIS- 82
           GIDE GRG LAG + VA +  +       +  G+ DSKK+S KKR  L  KI +   +  
Sbjct: 9   GIDEAGRGCLAGSLFVAGVACNEKTALEFLKMGLKDSKKLSLKKRFFLEYKIKTHGEVGF 68

Query: 83  -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138
            +   S   ID   +      A+   +EN   +     IDG +   + +  P     +IK
Sbjct: 69  FVVKKSANEIDSLGLGACLKLAVQEILENGCSLVDEIKIDGNTAFGLNKRYPHIQ-TIIK 127

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
           GD     IA AS++AK  +DR M   H  + +YG+D + GY T +H + I + G +  HR
Sbjct: 128 GDETIAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHR 187

Query: 199 LTFRPLRN 206
            +F  L+N
Sbjct: 188 HSF-TLKN 194


>gi|148272555|ref|YP_001222116.1| ribonuclease HII [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
 gi|147830485|emb|CAN01420.1| rnhB [Clavibacter michiganensis subsp. michiganensis NCPPB 382]
          Length = 219

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 70/204 (34%), Positives = 103/204 (50%), Gaps = 12/204 (5%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKK 67
           P  +LE  +       V G DEVGRGALAGPV V   ++ P+ +  P G+ DSK +S K+
Sbjct: 6   PTLDLEHELLHAGAALVIGCDEVGRGALAGPVAVGMAVVGPDAVGFPPGLRDSKMLSEKR 65

Query: 68  REELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQV-----IPRSALID 121
           RE L+  +      S +  AS   +D+  I      A   A+  L       +    L+D
Sbjct: 66  REALHPVVAGWVRHSAVGMASAAEVDELGITACLGLAGRRALVELHHAGVPLLDSVVLLD 125

Query: 122 GRS--IPEDL--PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
           G    +   L  P      +K D    S+AAAS++AKV RDR+M + H+  P+YG+  + 
Sbjct: 126 GAHDWLTPHLAHPVPVRLRVKADRDCASVAAASVLAKVERDRMMAVWHEDLPEYGWAGNK 185

Query: 178 GYPTAKHQQVIKEKGPSCIHRLTF 201
           GY +A H   I+ +G S +HR T+
Sbjct: 186 GYGSAAHLDAIRARGASPLHRRTW 209


>gi|108804231|ref|YP_644168.1| RNase HII [Rubrobacter xylanophilus DSM 9941]
 gi|108765474|gb|ABG04356.1| RNase HII [Rubrobacter xylanophilus DSM 9941]
          Length = 204

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 69/198 (34%), Positives = 105/198 (53%), Gaps = 5/198 (2%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
           ER  +  +A        PVAG+DE GRGALAGP+V AA+ILD   +  G++DSK+++   
Sbjct: 9   ERELYAFDAAWAASRRPPVAGVDEAGRGALAGPLVAAAVILD-GGVVEGLDDSKRLARPA 67

Query: 68  REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           RE L  ++  SA   S+      +ID+H +  A  + +  AV  L       L DG    
Sbjct: 68  RERLLPEVLGSAEALSVVVFPAWWIDEHGLGAANREVLRRAVGRLLPRAGCCLADGN--- 124

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
             L  +   +   D  S ++AAAS++AKV RD  M      +P YGF+ + GY T +H++
Sbjct: 125 LRLGPRIDCLPGADGRSAAVAAASVVAKVLRDAAMSALGAAHPGYGFERNCGYGTPEHRR 184

Query: 187 VIKEKGPSCIHRLTFRPL 204
            +   GP  +HRL++  +
Sbjct: 185 ALARLGPCRVHRLSYAGV 202


>gi|225351148|ref|ZP_03742171.1| hypothetical protein BIFPSEUDO_02736 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158604|gb|EEG71846.1| hypothetical protein BIFPSEUDO_02736 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 249

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 107/246 (43%), Gaps = 54/246 (21%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI---------------- 53
           P  +LE  + E+    + G DEVGRG+LAGPV+V A  +   ++                
Sbjct: 7   PTLDLERAIAEQGYDVIVGFDEVGRGSLAGPVMVGAAAIWARDLDGPAGASQGGSQESSH 66

Query: 54  ---PFGINDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVE 109
              P G+ DSK ++  KRE +++++ S  A  ++ +AS++ ID+  I  A   A   A+ 
Sbjct: 67  LEVPKGVADSKMLTEHKREAIFDELKSWCASWAVGAASNKEIDEWGISHALGVAALRALA 126

Query: 110 NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIA-----------KV--- 155
             +       IDG  +    P +  A++ G +  ++    +  A           KV   
Sbjct: 127 QAEAK---LGIDGNGMLSGKPVKVGAILDGPNDYITKTLNTFDAPEVPVPANVTTKVKGD 183

Query: 156 ---------------TRDRLMRIAHKK--YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
                          TRDRLM     +  Y  Y +  + GY +A H+  I E GPS +HR
Sbjct: 184 RYCVAVAAAAVIAKVTRDRLMVELGAQPQYEPYEWAHNKGYGSAAHRDAIAEFGPSDLHR 243

Query: 199 LTFRPL 204
           L++  +
Sbjct: 244 LSWHLV 249


>gi|2352484|gb|AAC46185.1| RNAseH II [Lactococcus lactis subsp. cremoris MG1363]
          Length = 166

 Score =  168 bits (426), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 63/164 (38%), Positives = 96/164 (58%), Gaps = 3/164 (1%)

Query: 45  AIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDA 103
           A+IL  N    G+NDSKK+   K   +  +I   A+ I +     + ID+ NI++AT  A
Sbjct: 1   AVILPKNCKIRGLNDSKKVPKSKHHAILSEIQEKALAIGVGIVDAEKIDEVNIYEATKIA 60

Query: 104 IYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163
           +  AV  L + P   LID   +  DLP     +I GD+ S SIAAASI+AKVTRD +M+ 
Sbjct: 61  MIQAVSKLSLKPEHLLIDAMVL--DLPIAQTKIIHGDARSASIAAASIVAKVTRDEMMKD 118

Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
              ++P+Y F+ + GY TAKH   + + G + IHR ++ P++++
Sbjct: 119 FALEFPEYDFEHNAGYGTAKHLAALTKYGITRIHRKSYEPIKSM 162


>gi|283782847|ref|YP_003373601.1| ribonuclease HII [Gardnerella vaginalis 409-05]
 gi|298253324|ref|ZP_06977116.1| ribonuclease HII [Gardnerella vaginalis 5-1]
 gi|283442005|gb|ADB14471.1| ribonuclease HII [Gardnerella vaginalis 409-05]
 gi|297532719|gb|EFH71605.1| ribonuclease HII [Gardnerella vaginalis 5-1]
          Length = 247

 Score =  168 bits (426), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 112/240 (46%), Gaps = 42/240 (17%)

Query: 4   NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII----LDPNNIPFGIN 58
           ++IP  P F+ E  +  +    V G+DEVGRG+LAGPV+V AA+I    +  N +P G+ 
Sbjct: 6   SNIPLVPSFKYEQDLLCEGYDWVIGLDEVGRGSLAGPVMVGAAVIGIKQVKENYMPEGLA 65

Query: 59  DSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVEN------- 110
           DSK +S K+REELYE +       ++ S ++  ID+  I  A   A   A+         
Sbjct: 66  DSKLLSEKRREELYEPLQKWCTTWAVGSCTNTEIDEWGISYALGVAALKAISKVEEDIKK 125

Query: 111 ------------------------LQVIPRSALIDGRSIPEDL---PCQAFAVIKGDSIS 143
                                   L            +        P +   ++K D   
Sbjct: 126 LSFSVNANTRENTRENSNFRIAAILDGPCDYIDKVANTFDAPYIPEPVKVHTLVKADRQC 185

Query: 144 LSIAAASIIAKVTRDRLMRIAHK--KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            S+AAA+++AKVTRD LM    K  KY  Y + S+ GY +  H+  IK+ GPS +HRL++
Sbjct: 186 ASVAAAAVLAKVTRDNLMVSLAKNPKYAAYDWASNKGYGSLAHRNAIKKVGPSDLHRLSW 245


>gi|224437531|ref|ZP_03658489.1| ribonuclease HII [Helicobacter cinaedi CCUG 18818]
 gi|313143983|ref|ZP_07806176.1| ribonuclease HII [Helicobacter cinaedi CCUG 18818]
 gi|313129014|gb|EFR46631.1| ribonuclease HII [Helicobacter cinaedi CCUG 18818]
          Length = 239

 Score =  167 bits (424), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 98/233 (42%), Gaps = 52/233 (22%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITS---SA 79
             +AGIDE GRG + G + VA +I    NI  FG  DSKK+S K+RE +Y+ +       
Sbjct: 1   MWLAGIDEAGRGCICGALFVAGVIGREENIAHFGAKDSKKLSPKQRERIYQTLLESQHKG 60

Query: 80  IIS--ISSASHQYIDKHNIHKATLDAIYHAV----------------------------E 109
            I   ++      IDK  +  A  + I   +                            +
Sbjct: 61  EIGLFVAQIEAWEIDKFGLSIAMKNGIEQILCRIADFATLQNLIGQNVEQNTAKHNLLEQ 120

Query: 110 NLQVIP----------RSALIDGR-----SIPEDLPCQ---AFAVIKGDSISLSIAAASI 151
           +++  P          +  ++DG       IP  L         ++K D I   ++ ASI
Sbjct: 121 DVEQNPTDSTDSKNALQEIIMDGNTTFQAKIPHILTQSGVGVQTLVKADDIMPIVSCASI 180

Query: 152 IAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +AKV++DR M    K YP Y    + GY T +H++ I + G    HR +F+ L
Sbjct: 181 VAKVSKDRQMHELDKLYPQYFLAKNKGYGTLQHKKAIAKNGYCPHHRKSFKIL 233


>gi|57505767|ref|ZP_00371693.1| ribonuclease HII [Campylobacter upsaliensis RM3195]
 gi|57016040|gb|EAL52828.1| ribonuclease HII [Campylobacter upsaliensis RM3195]
          Length = 174

 Score =  167 bits (424), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 67/178 (37%), Positives = 105/178 (58%), Gaps = 8/178 (4%)

Query: 26  VAGIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84
           + GIDE GRGALAGP+ +AA  +L P N    + DSKK++ KKR++LY +I S++   I 
Sbjct: 2   LVGIDEAGRGALAGPLFIAACELLKPLNE---LKDSKKLNEKKRKKLYGEIISNSNYLIL 58

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           + S+  ID   + K     +   + +L    +  + DG +    L  +   +IK DS+  
Sbjct: 59  AFSNAQIDTLGLSKCLQKGLE--IIHLHFEKQRKIFDGNTNYGVLGIE--NLIKADSLIA 114

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            ++AASI+AKV+RD++M+    KYP YGF+ H  Y T  H++ I + G   +HRL+F+
Sbjct: 115 EVSAASILAKVSRDKVMQFLALKYPQYGFEIHKAYGTKAHRESIAKYGACKLHRLSFK 172


>gi|227875952|ref|ZP_03994075.1| possible ribonuclease H [Mobiluncus mulieris ATCC 35243]
 gi|227843484|gb|EEJ53670.1| possible ribonuclease H [Mobiluncus mulieris ATCC 35243]
          Length = 271

 Score =  167 bits (424), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 101/226 (44%), Gaps = 51/226 (22%)

Query: 25  PVAGIDEVGRGALAGPV-----VVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
            V G+DEVGRGALAGPV     VV+A  L     P G+NDSK ++ ++RE L + I S  
Sbjct: 47  LVGGMDEVGRGALAGPVCIGVTVVSATELAAGFPP-GLNDSKALTARRREALVQPIQSWV 105

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGR------------ 123
              +I  A++  ID+  I  A   A + A+  L     +P+  L+DG             
Sbjct: 106 KDFAIGEATNMEIDEMGIMAAMRLAGWRALNQLDARGHLPQKLLLDGNVDYLQAEHQANL 165

Query: 124 --------------------------SIPEDLPC-QAFAVIKGDSISLSIAAASIIAKVT 156
                                       P   P  +   ++K D  + ++A A+++AKV 
Sbjct: 166 FDAQWHLMNPAQPAQPAQPAMGTTPAHNPPPAPLLKVQTLVKADQHAATVAGAAVLAKVY 225

Query: 157 RDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           RD  M       P YG+  +VGY T  H++ I   GPS  HR T++
Sbjct: 226 RDAFMSRLED--PGYGWSHNVGYGTKAHREAISRLGPSRWHRHTWK 269


>gi|306823660|ref|ZP_07457035.1| ribonuclease HII [Bifidobacterium dentium ATCC 27679]
 gi|309802965|ref|ZP_07697066.1| ribonuclease HII [Bifidobacterium dentium JCVIHMP022]
 gi|304553367|gb|EFM41279.1| ribonuclease HII [Bifidobacterium dentium ATCC 27679]
 gi|308220432|gb|EFO76743.1| ribonuclease HII [Bifidobacterium dentium JCVIHMP022]
          Length = 234

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 113/226 (50%), Gaps = 35/226 (15%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--------DPNNIPFGINDSK 61
           P  +LE  +  +    + G DEVGRG+LAGPV+V A  +        D  ++P G+ DSK
Sbjct: 7   PTLQLEREIAARGYDVIVGFDEVGRGSLAGPVMVGAAAIRTADLDGPDALDVPEGVADSK 66

Query: 62  KISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
            ++  +RE ++E + S  A  ++ ++S+  ID+  I  A   A   A++ ++     A  
Sbjct: 67  MLTEHRRETIFESLKSWSASWAVGASSNAEIDEWGISYALGVAALRALDEVERELGIAD- 125

Query: 121 DGRSI--------PEDL---------------PCQAFAVIKGDSISLSIAAASIIAKVTR 157
           DGRSI        P D                P      +KGD    ++A A++IAKVTR
Sbjct: 126 DGRSIRVGAILDGPNDYITKALGTFDAPDVPVPATVTTKVKGDRYCATVATAAVIAKVTR 185

Query: 158 DRLMRIAHKK--YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           DRLM    ++  Y  Y +  + GY +A H++ I   GPS +HR+++
Sbjct: 186 DRLMIELGERPEYAIYEWQRNKGYGSAAHREAIAAHGPSDLHRISW 231


>gi|258653296|ref|YP_003202452.1| ribonuclease H [Nakamurella multipartita DSM 44233]
 gi|258556521|gb|ACV79463.1| Ribonuclease H [Nakamurella multipartita DSM 44233]
          Length = 244

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 92/234 (39%), Gaps = 49/234 (20%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGP-----------VVVAAIILDPNNIPFGI 57
           RPH  +E  +    +  +A +DEVGRGALAGP           V           +P G+
Sbjct: 6   RPHLRVEKQLMRDGVTRLAAMDEVGRGALAGPVSVGVVVVTPEV---------RRVPPGL 56

Query: 58  NDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116
            DSK ++ + R+ L   +       ++  AS   ID   I  A   A   A+  L     
Sbjct: 57  ADSKLLTPEARQRLVAPVRRWVQEYAVGHASADEIDAIGIIAALRTAGRRALAELSGPVD 116

Query: 117 SALIDGRSIPEDLPCQ----------------------------AFAVIKGDSISLSIAA 148
           + L+DG       P                                  IK D    ++A 
Sbjct: 117 AILLDGNHNYLREPAAPAAAPDPLAAPLFEVAAEAVAPADPEPAVHVRIKADMTCAAVAG 176

Query: 149 ASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           AS++AK  RD ++      YP YGF  + GY T +H   ++E GP  +HR ++R
Sbjct: 177 ASVLAKTERDAILTGLGPDYPAYGFAVNKGYGTPEHLAALREHGPCAVHRRSWR 230


>gi|206896037|ref|YP_002247054.1| ribonuclease HII [Coprothermobacter proteolyticus DSM 5265]
 gi|206738654|gb|ACI17732.1| ribonuclease HII [Coprothermobacter proteolyticus DSM 5265]
          Length = 202

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 64/192 (33%), Positives = 98/192 (51%), Gaps = 4/192 (2%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69
           P +ELE  +  K   PV G+DEVGRGA+AGP++V A+    ++      DSK++S  +R+
Sbjct: 5   PSWELEKGLFGK---PVVGVDEVGRGAVAGPLLVCAVRFH-SSPEVKWRDSKQMSPLQRK 60

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            ++  I  S+   I  A+   ID+  I      A   A+  + +     + DG+      
Sbjct: 61  SVFANIVESSCFGIGLAAPWDIDRFGISFCLKQAAEEALAEIPLDDAIVVFDGKRPLTTE 120

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                 ++KGD +  S+AAAS++AKV RD LM       P Y F +H GY T  H + I+
Sbjct: 121 VPDYQCMVKGDVLLPSVAAASVVAKVIRDELMVCLDSLLPGYEFSAHKGYGTKTHLEAIR 180

Query: 190 EKGPSCIHRLTF 201
             G +  HR +F
Sbjct: 181 CFGITAQHRRSF 192


>gi|213857938|ref|ZP_03384909.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 131

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 58/132 (43%), Positives = 76/132 (57%), Gaps = 2/132 (1%)

Query: 63  ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           +S K+R  LY++I   A+  S+  A    ID+ NI  AT+ A+  AV  L + P   LID
Sbjct: 1   MSEKRRLSLYDEIKEKALSWSLGRAEAHEIDELNILHATMLAMQRAVAGLHIAPEYVLID 60

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           G   PE LP  + AV+KGDS    I+AASI+AKVTRD  M      +P YGF  H GYPT
Sbjct: 61  GNRCPE-LPVPSMAVVKGDSRVAEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPT 119

Query: 182 AKHQQVIKEKGP 193
           A H + + + G 
Sbjct: 120 AFHLEKLAQYGA 131


>gi|171741370|ref|ZP_02917177.1| hypothetical protein BIFDEN_00451 [Bifidobacterium dentium ATCC
           27678]
 gi|283455277|ref|YP_003359841.1| ribonuclease [Bifidobacterium dentium Bd1]
 gi|171276984|gb|EDT44645.1| hypothetical protein BIFDEN_00451 [Bifidobacterium dentium ATCC
           27678]
 gi|283101911|gb|ADB09017.1| Putative ribonuclease [Bifidobacterium dentium Bd1]
          Length = 234

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 112/226 (49%), Gaps = 35/226 (15%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--------DPNNIPFGINDSK 61
           P  +LE  +  +    + G DEVGRG+LAGPV+V A  +        D  ++P G+ DSK
Sbjct: 7   PTLQLEREIAARGYDVIVGFDEVGRGSLAGPVMVGAAAIRTADLDGPDALDVPEGVADSK 66

Query: 62  KISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
            ++  +RE ++E + S  A  ++ ++S+  ID+  I  A   A   A++ ++     A  
Sbjct: 67  MLTEHRRETIFESLKSWSASWAVGASSNAEIDEWGISYALGVAALRALDEVERELGIAD- 125

Query: 121 DGRSI--------PEDL---------------PCQAFAVIKGDSISLSIAAASIIAKVTR 157
           DGR I        P D                P      +KGD    ++A A++IAKVTR
Sbjct: 126 DGRPIRVGAILDGPNDYITKALGTFDAPDVPVPATVTTKVKGDRYCATVATAAVIAKVTR 185

Query: 158 DRLMRIAHKK--YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           DRLM    ++  Y  Y +  + GY +A H++ I   GPS +HR+++
Sbjct: 186 DRLMIELGERPEYAIYEWQRNKGYGSAAHREAIAAHGPSDLHRISW 231


>gi|297242877|ref|ZP_06926815.1| ribonuclease HII [Gardnerella vaginalis AMD]
 gi|296889088|gb|EFH27822.1| ribonuclease HII [Gardnerella vaginalis AMD]
          Length = 255

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 112/248 (45%), Gaps = 50/248 (20%)

Query: 4   NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII----LDPNNIPFGIN 58
           ++IP  P F+ E  +  +    V G+DEVGRG+LAGPV+V AA+I    +  N +P G+ 
Sbjct: 6   SNIPLVPSFKYEQDLLSEGYDWVIGLDEVGRGSLAGPVMVGAAVIGIKQVKENYMPEGLA 65

Query: 59  DSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVEN------- 110
           DSK +S K+REELYE +       ++ S ++  ID+  I  A   A   A+         
Sbjct: 66  DSKLLSEKRREELYEPLQKWCTTWAVGSCTNTEIDEWGISYALGVAALKAISKVEEDIKK 125

Query: 111 --------------------------------LQVIPRSALIDGRSIPEDL---PCQAFA 135
                                           L            +        P +   
Sbjct: 126 LSFSVNADSGENTCAKLGADSGANSNFRIAAILDGPCDYIDKVANTFDAPYVPEPVKVHT 185

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHK--KYPDYGFDSHVGYPTAKHQQVIKEKGP 193
           ++K D    S+AAA+++AKVTRD LM    K  +Y  Y + S+ GY +  H+  IK+ GP
Sbjct: 186 LVKADRQCASVAAAAVLAKVTRDNLMVSLAKNPQYAAYDWASNKGYGSLAHRNAIKKVGP 245

Query: 194 SCIHRLTF 201
           S +HRL++
Sbjct: 246 SDLHRLSW 253


>gi|255020983|ref|ZP_05293038.1| Ribonuclease HII [Acidithiobacillus caldus ATCC 51756]
 gi|254969588|gb|EET27095.1| Ribonuclease HII [Acidithiobacillus caldus ATCC 51756]
          Length = 168

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 63/165 (38%), Positives = 89/165 (53%), Gaps = 5/165 (3%)

Query: 41  VVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKA 99
           + VAA+IL       G+ DSKK+S  +R  L +KI + A   +I+SA    I+++N+ +A
Sbjct: 1   MTVAAVIL--ARPLPGLADSKKLSPLRRAVLSQKIRAEAWAWAIASAGSWEIERYNVLQA 58

Query: 100 TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR 159
           TL A+  A+  L   P    +DG         QA  +++GDS   +IAAASI+AK  RD 
Sbjct: 59  TLRAMDRALRALPPGPWRVAVDGNRALPHW--QAETLVRGDSRLDAIAAASILAKTARDA 116

Query: 160 LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
            M    +  P Y F  H GYPT  H   ++  GPS IHR  F P+
Sbjct: 117 EMDALDRHLPGYAFGQHRGYPTPLHLAALQRLGPSLIHRRGFAPV 161


>gi|256371394|ref|YP_003109218.1| Ribonuclease H [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007978|gb|ACU53545.1| Ribonuclease H [Acidimicrobium ferrooxidans DSM 10331]
          Length = 200

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 68/201 (33%), Positives = 100/201 (49%), Gaps = 15/201 (7%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGPVVVAAI---------ILDPNNIPFGINDSKKISHKK 67
           M+ + +   + GIDEVGRGA AGPVVV A          IL   +   G+ DSK +S   
Sbjct: 1   MLHQPSGDRLVGIDEVGRGAWAGPVVVGAARGSVAAAAAIL--AHPRGGVRDSKALSPAA 58

Query: 68  REELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
           RE     + ++ +   + SAS + IDK  +  A   A + A+     +    L+DG  +P
Sbjct: 59  REAALGALEAAGLELTVGSASAREIDKLGLTGALRLAAHRALGAASEL--EVLLDG-RVP 115

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
                +   ++ GD     IAAASI+AKV RD  M    +    YGF  H GY TA+H++
Sbjct: 116 YVEAGRVHCIVGGDRRHPLIAAASIVAKVRRDAFMVALDELAAGYGFARHKGYGTAEHRR 175

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
            + E G +  HR +F P+  +
Sbjct: 176 ALSEHGVTPWHRRSFGPIGGM 196


>gi|306819232|ref|ZP_07452943.1| ribonuclease HII [Mobiluncus mulieris ATCC 35239]
 gi|304648014|gb|EFM45328.1| ribonuclease HII [Mobiluncus mulieris ATCC 35239]
          Length = 274

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 101/229 (44%), Gaps = 54/229 (23%)

Query: 25  PVAGIDEVGRGALAGPV-----VVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79
            V G+DEVGRGALAGPV     VV+A  L     P G+NDSK ++ ++RE L + I S  
Sbjct: 47  LVGGMDEVGRGALAGPVCIGVTVVSATELAAGFPP-GLNDSKALTARRREALVQPIQSWV 105

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGR------------ 123
              +I  A++  ID+  I  A   A + A+  L     +P+  L+DG             
Sbjct: 106 KDFAIGEATNMEIDEMGIMAAMRLAGWRALNQLDARGHLPQKLLLDGNVDYLQAEHQANL 165

Query: 124 -----------------------------SIPEDLPC-QAFAVIKGDSISLSIAAASIIA 153
                                          P   P  +   ++K D  + ++A A+++A
Sbjct: 166 FDAQWHLMNPAQPAQPAQPAQPAMGTTPAHNPPPAPLLKVQTLVKADQHAATVAGAAVLA 225

Query: 154 KVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           KV RD  M       P YG+  +VGY T  H++ I   GPS  HR T++
Sbjct: 226 KVYRDAFMSRLED--PGYGWSHNVGYGTKAHREAISRLGPSRWHRHTWK 272


>gi|254467826|ref|ZP_05081232.1| ribonuclease HII [beta proteobacterium KB13]
 gi|207086636|gb|EDZ63919.1| ribonuclease HII [beta proteobacterium KB13]
          Length = 179

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/189 (39%), Positives = 99/189 (52%), Gaps = 26/189 (13%)

Query: 27  AGIDEVGRGALAGPVVVAAII-----------LDPNNIPFGINDSKKISHKKREELYEKI 75
            GIDEVGRG                       +D +     ++DSK +S K+RE L ++I
Sbjct: 3   IGIDEVGRGC-----------VAGPVVAAAVVIDESFDVL-VSDSKLLSAKRRESLDKEI 50

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
               +  SIS  + + +D+ NIHKA+L A+  A  NL     S   DG+  P+     A 
Sbjct: 51  KKKCVDFSISVINSKIVDEINIHKASLLAMEQAYINLCHQSGSIKCDGKFTPKIDG--AV 108

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
           A + GD +   I+AASIIAKV RD LM     KYPDY FD H GY T  H + I++ GP 
Sbjct: 109 AHVNGDKLYTEISAASIIAKVYRDHLMNYISLKYPDYHFDKHKGYLTKLHLEAIEQYGPC 168

Query: 195 CIHRLTFRP 203
            IHRLTF+P
Sbjct: 169 NIHRLTFKP 177


>gi|311744109|ref|ZP_07717915.1| ribonuclease HII [Aeromicrobium marinum DSM 15272]
 gi|311313239|gb|EFQ83150.1| ribonuclease HII [Aeromicrobium marinum DSM 15272]
          Length = 191

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/176 (40%), Positives = 107/176 (60%), Gaps = 4/176 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISISS 85
           AG+DE GRGA AGP+V AA+ILD      G+ DSK ++  +RE  +++I T +  +S+  
Sbjct: 2   AGVDEAGRGACAGPLVAAAVILD--RPVPGLADSKLLTPARREACHDEILTRAVDVSVVV 59

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145
            S    D+  +H+A ++A+  A+  L   P   L DG  + + L     A+ KGD ++ S
Sbjct: 60  VSAADCDRLGLHRANIEALRRALARLTRRPGYVLTDGFPV-DGLGTPGLAMWKGDRVAAS 118

Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           IAAAS++AKVTRDRLM   H+++P Y F +H GY TA H+  ++  GP   HR T+
Sbjct: 119 IAAASVVAKVTRDRLMVELHEQFPAYDFGTHKGYATAAHEAALRRHGPCAEHRSTY 174


>gi|269219635|ref|ZP_06163489.1| ribonuclease HII [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210877|gb|EEZ77217.1| ribonuclease HII [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 227

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 66/208 (31%), Positives = 98/208 (47%), Gaps = 16/208 (7%)

Query: 10  PHFELEAMVREK--NMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISH 65
           P  E+E            +AG+DEVGRG+LAGPV V   ++D    + P G+ DSK +S 
Sbjct: 10  PSREIEIDALRSLPPGALIAGVDEVGRGSLAGPVSVGIALIDASTGDFPEGLRDSKAMSP 69

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
             RE +   +   A+ +++  A    ID   I  A   A   A+  L   P + L+DG+ 
Sbjct: 70  AARERMAPLVREWAVDVAVGHAGPDVIDDVGIVAALRHAAKEALNGLSATPSAVLLDGKH 129

Query: 125 ----------IPEDLP-CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173
                     +   LP       +KGD+    IAAAS+ AKV RD LM +    +P Y +
Sbjct: 130 NWWAEDSLFDVDPLLPQIPVRMEVKGDARCAVIAAASVAAKVERDGLMVVLDGCFPGYDW 189

Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             + GY +  H + +   GPS  HR ++
Sbjct: 190 ARNKGYASPSHIEGLARLGPSDHHRKSW 217


>gi|134298779|ref|YP_001112275.1| ribonuclease H [Desulfotomaculum reducens MI-1]
 gi|134051479|gb|ABO49450.1| Ribonuclease H [Desulfotomaculum reducens MI-1]
          Length = 355

 Score =  164 bits (417), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 63/176 (35%), Positives = 89/176 (50%), Gaps = 5/176 (2%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGI-NDSKKISHKKREELYEKITSSAI-ISIS 84
           AGIDEVG  ++AGP+V A ++L  ++   GI  DSK+++ K  EE+   I   A    I+
Sbjct: 89  AGIDEVGVSSIAGPMVAAVVVLPHDHNIPGIPRDSKEMTLKSIEEISSLIFEKADFWHIA 148

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQ-VIPR-SALIDGRSIPEDLPCQAFAVIKGDSI 142
           S S + ID      A           ++ V P+   ++DG+        +  AV KGDSI
Sbjct: 149 SISPKEIDDIGPELAREKLWMECANKVRSVFPKIRIIVDGKDKIPGFT-KQNAVSKGDSI 207

Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198
              ++AA+I+AK   D  MRI H  YP Y F  + GYP  +H   IK  G    HR
Sbjct: 208 FSGVSAAAIVAKQYCDNEMRILHNYYPQYNFSKNKGYPVYEHYVAIKNYGICPSHR 263


>gi|291456102|ref|ZP_06595492.1| ribonuclease HII [Bifidobacterium breve DSM 20213]
 gi|291382511|gb|EFE90029.1| ribonuclease HII [Bifidobacterium breve DSM 20213]
          Length = 286

 Score =  164 bits (417), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 112/283 (39%), Gaps = 87/283 (30%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII----LDPN--------- 51
           +   P  +LE  +  +    + G DEVGRGALAGPV+V  A I    L P+         
Sbjct: 1   MMITPTLDLERSLASQGYDLIVGFDEVGRGALAGPVMVGCAAIWARDLKPDADGELAQAA 60

Query: 52  ---------------------------NIPFGINDSKKISHKKREELYEKITSS-AIISI 83
                                      ++P G+ DSK ++  +RE +++++ S  A  ++
Sbjct: 61  GSAASSRVSGDNGTDAGVITPNPAPYLSVPAGVADSKMLTEHRREAIFDELCSWCAAYAV 120

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVI---------PRSAL----IDGRSIPEDLP 130
             +S+  ID+  I  A   A   A+  ++           PR        +GR +P   P
Sbjct: 121 GQSSNAEIDEWGITYALGVAALRALNQVERDLGVGSEFGSPREGSCLTATEGRPLPSRRP 180

Query: 131 CQAFAVIKGDSISLSIAAASIIA-----------------------------KVTRDRLM 161
               A++ G S  ++ A  +  A                             KVTRDRLM
Sbjct: 181 ITIGAILDGPSDYITKALNTFDAPDVPIPADVTTKVKGDQHCATVATAAVIAKVTRDRLM 240

Query: 162 RIAHK---KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
               +   +Y  Y +D + GY +A H+  I E GP+ +HR ++
Sbjct: 241 VSIAQGNPRYAAYEWDHNKGYGSAAHRAAIAEYGPTPLHRTSW 283


>gi|307700238|ref|ZP_07637279.1| ribonuclease HII [Mobiluncus mulieris FB024-16]
 gi|307614620|gb|EFN93848.1| ribonuclease HII [Mobiluncus mulieris FB024-16]
          Length = 257

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 99/222 (44%), Gaps = 46/222 (20%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI 80
            V G+DEVGRGALAGPV +   ++    +    P G+NDSK ++ ++RE L + I S   
Sbjct: 36  LVGGMDEVGRGALAGPVCIGVTVVSATELAAGFPPGLNDSKALTARRREALVQPIQSWVK 95

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGR------------- 123
             +I  A++  ID+  I  A   A + A+  L     +P+  L+DG              
Sbjct: 96  DFAIGEATNMEIDEMGIMAAMRLAGWRALNQLDARGHLPQKLLLDGNVDYLQAEHQANLF 155

Query: 124 ----------------------SIPEDLPC-QAFAVIKGDSISLSIAAASIIAKVTRDRL 160
                                   P   P  +   ++K D  + ++A A+++AKV RD  
Sbjct: 156 DAQWHLMNPAQPAQPAMGTTPAHNPPPAPLLKVQTLVKADQHAATVAGAAVLAKVYRDAF 215

Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           M       P YG+  +VGY T  H++ I   G S  HR T++
Sbjct: 216 MSRLED--PGYGWSHNVGYGTKAHREAISRLGSSRWHRHTWK 255


>gi|294790566|ref|ZP_06755724.1| ribonuclease HII [Scardovia inopinata F0304]
 gi|294458463|gb|EFG26816.1| ribonuclease HII [Scardovia inopinata F0304]
          Length = 279

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 80/272 (29%), Positives = 120/272 (44%), Gaps = 80/272 (29%)

Query: 10  PHFELEAMVRE--KNMWPVAGIDEVGRGALAGPVVVAAIIL------DPNN--------- 52
           PH+ +EA +     N   + G DEVGRG LAGPV+V A          P+          
Sbjct: 3   PHWRVEAALAAGPDNPQWIIGCDEVGRGCLAGPVMVGACAFRLPDLRPPDYASEHKFDYE 62

Query: 53  ----------IPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATL 101
                     IP G+ DSK ++ KKRE LY+ + S +   ++ SAS++ ID+  I  A  
Sbjct: 63  SDYESAMTASIPSGLKDSKLLTEKKREALYDPLASWSDTWAVGSASNKEIDQVGIISALG 122

Query: 102 DAIYHAVE--------------------------------NLQVIPRSALIDG------- 122
            A   A++                                 L  +P S ++DG       
Sbjct: 123 LAAVRALDQIGQTISGSSSEAVDASEETEDTDDHSSREARGLSQLPASLILDGPYDYISP 182

Query: 123 ----RSIPEDLPCQ------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD-- 170
                 +P+ +  +         V+KGD    S+AAAS++AKVTRDR M     K P   
Sbjct: 183 ILQSILLPDQIRSRFAFRLSVTTVVKGDQTCASVAAASVMAKVTRDRYMIRLADKNPQWE 242

Query: 171 -YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            YG+  + GY TA+H++ IK+ GP+  HR+++
Sbjct: 243 PYGWARNKGYGTAQHRRAIKDLGPTSYHRVSW 274


>gi|294102509|ref|YP_003554367.1| Ribonuclease H [Aminobacterium colombiense DSM 12261]
 gi|293617489|gb|ADE57643.1| Ribonuclease H [Aminobacterium colombiense DSM 12261]
          Length = 195

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/186 (41%), Positives = 109/186 (58%), Gaps = 6/186 (3%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               +AG+DE GRG LAGPVV AA++L P+ +      G+NDSKK++  KRE++++ + S
Sbjct: 2   GNRVIAGVDEAGRGPLAGPVVAAAVVLTPSQLDALAALGLNDSKKLTPLKREKIFKAMVS 61

Query: 78  SAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLPCQAFA 135
             +     +AS + ID+ NI +ATL A+  +V  L  +    ++DG   IP        A
Sbjct: 62  LGVAWRAQAASPRRIDQMNILQATLWAMSRSVNKLPHVFEEVIVDGSVLIPGLRSYPQKA 121

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195
           + KGDS+   +AAAS++AKV RDR M      YP Y F  H GYPT  H++ I E G S 
Sbjct: 122 IPKGDSLVPEVAAASVVAKVLRDRAMVALDMAYPQYNFAKHKGYPTEDHRRRITEFGLSP 181

Query: 196 IHRLTF 201
           IHR +F
Sbjct: 182 IHRRSF 187


>gi|229140479|ref|ZP_04269034.1| Ribonuclease [Bacillus cereus BDRD-ST26]
 gi|228643040|gb|EEK99316.1| Ribonuclease [Bacillus cereus BDRD-ST26]
          Length = 147

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/146 (44%), Positives = 94/146 (64%), Gaps = 3/146 (2%)

Query: 63  ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121
           +S  KRE  Y++I + AI I +   S Q ID+ NI++AT  A+  AV NL   P+  LID
Sbjct: 1   MSEAKRERFYDEIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLID 60

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
              +P   P    ++IKGD+ S+SI+AASIIAKVTRDR+M+   +KYP YGF+ H+GY T
Sbjct: 61  AMKLPT--PIPQTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGT 118

Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207
            +H + I+  G    HR +F P++++
Sbjct: 119 KQHLEAIEAHGILEEHRKSFAPIKDM 144


>gi|254173516|ref|ZP_04880188.1| ribonuclease HII [Thermococcus sp. AM4]
 gi|214032208|gb|EEB73038.1| ribonuclease HII [Thermococcus sp. AM4]
          Length = 230

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 105/206 (50%), Gaps = 28/206 (13%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS-AI 80
           +AGIDE GRG + GP+V+AA+++D + +      G+ DSKK++ ++RE L+++I +    
Sbjct: 7   LAGIDEAGRGPVIGPMVIAAVVVDEDKLGNLEELGVKDSKKLTPRRRERLFDEIIAQLDD 66

Query: 81  ISISSASHQYID--KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED---------- 128
             I     + ID  K  +++  ++    A+ +L+V P    ID   + E           
Sbjct: 67  YVIIELWPEEIDSRKVTLNEFEVENFAKALNSLKVRPDVVYIDAADVKEGRFGEAVGRLL 126

Query: 129 -LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQ 186
               +  A  + D   + ++AASI+AKV RDR +    ++Y + G     GYP+  + ++
Sbjct: 127 SFKAEIVAEHRADDKFVPVSAASILAKVVRDRAIERLKREYGEIG----SGYPSDPRTRE 182

Query: 187 VI----KEKG-PSCIHRLTFRPLRNL 207
            +    +E G    I R T++ ++ +
Sbjct: 183 FLEKYYREHGDFPPIVRKTWKTVKKI 208


>gi|320532025|ref|ZP_08032917.1| ribonuclease HII [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320135759|gb|EFW27815.1| ribonuclease HII [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 240

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 100/226 (44%), Gaps = 36/226 (15%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISH 65
           RP   LE  + E     V G+DEVGRGALAGPV V   I+     +  P G+ DSK+++ 
Sbjct: 8   RPDRCLEKALLET-YDCVGGLDEVGRGALAGPVSVGLAIVARRTDDGFPEGLADSKQLTA 66

Query: 66  KKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHA---VENLQVIPRSALID 121
           + R  L + + S     +++ AS   ID+  I  A   A   A   V +    P   ++D
Sbjct: 67  RARRGLVDPVRSWLVDHAVAHASPAEIDERGIVGALRMAGLRALQQVADRGHAPGIIILD 126

Query: 122 GRSI----------------------PEDLPCQAFA----VIKGDSISLSIAAASIIAKV 155
           G +                       PE +   +       +K D+    +AAASI+AKV
Sbjct: 127 GVADWLTAPQPDLLTALEGAPPFRFAPEPVAVPSTPPVLMEVKADARCAVVAAASILAKV 186

Query: 156 TRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            RD LM       P YG+ S+ GY +  H + +   G S  HR ++
Sbjct: 187 ERDALMVDLDD--PGYGWASNKGYASPAHIKGLSALGASDQHRRSW 230


>gi|315230435|ref|YP_004070871.1| ribonuclease HII [Thermococcus barophilus MP]
 gi|315183463|gb|ADT83648.1| ribonuclease HII [Thermococcus barophilus MP]
          Length = 227

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 106/205 (51%), Gaps = 28/205 (13%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS-AIIS 82
           GIDE GRG + GP+V+AA+++D  N+      G+ DSKK++ ++RE+L+ +I       +
Sbjct: 8   GIDEAGRGPVIGPLVIAAVVIDEKNLSKLEALGVRDSKKLTPRRREKLFNEIIELLDDYA 67

Query: 83  ISSASHQYIDKHN--IHKATLDAIYHAVENLQVIPRSALIDGRSIPE-----------DL 129
           I   S + ID+    +++  ++     + +L+V P    ID   I E           + 
Sbjct: 68  IIELSPEQIDEREGTMNEFEIENFVRVLNSLKVKPDVLYIDAADIKEKRFGEIIGKGLNF 127

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVI 188
             +  A  K D+  L ++AASI+AKVTRD+ +    K+Y + G     GYP+  + ++ +
Sbjct: 128 SPKIIAEHKADAKYLPVSAASILAKVTRDKAIEKLKKQYGEIG----SGYPSDPRTRKFL 183

Query: 189 ----KEKG-PSCIHRLTFRPLRNLS 208
               KE G    I R +++ LR + 
Sbjct: 184 EEYYKEHGEFPPIVRKSWKTLRKIE 208


>gi|212223919|ref|YP_002307155.1| ribonuclease HII [Thermococcus onnurineus NA1]
 gi|226736826|sp|B6YVT5|RNH2_THEON RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|212008876|gb|ACJ16258.1| ribonuclease HII [Thermococcus onnurineus NA1]
          Length = 227

 Score =  161 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 28/207 (13%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS-SAI 80
           +AGIDE GRG + GP+V+AA+++D  N+P     G+ DSKK++ K+RE L+++I      
Sbjct: 3   LAGIDEAGRGPVLGPMVIAAVVVDEGNVPKLEELGVKDSKKLTPKRRERLFDEIVQLLDD 62

Query: 81  ISISSASHQYIDKHN--IHKATLDAIYHAVENLQVIPRSALIDGRSIPE----------- 127
             I     + ID     +++  ++    A+ +L+V P    ID   + E           
Sbjct: 63  YVILELWPEEIDSREGTLNEFEVENFVKALNSLKVKPDVVYIDAADVKEARFGEEIKAKL 122

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ-- 185
           D      A  K D   + ++AASI+AKV RDR +     +Y + G     GYP+      
Sbjct: 123 DFEADIIAEHKADDKFVPVSAASILAKVARDRAIEKLKDQYGEIG----SGYPSDPRTRT 178

Query: 186 ---QVIKEKG-PSCIHRLTFRPLRNLS 208
              +  ++ G    I R T++ L+ + 
Sbjct: 179 FLEEYYRKHGEFPPIVRRTWKTLKKIE 205


>gi|88855258|ref|ZP_01129923.1| ribonuclease HII [marine actinobacterium PHSC20C1]
 gi|88815786|gb|EAR25643.1| ribonuclease HII [marine actinobacterium PHSC20C1]
          Length = 211

 Score =  161 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 68/204 (33%), Positives = 100/204 (49%), Gaps = 12/204 (5%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKK 67
           P  ++E  +       V G DEVGRGA+AGPV V    + P     P G+ DSK +S K+
Sbjct: 6   PSNDIELELFSAGARTVIGCDEVGRGAIAGPVGVGMTAMTPAHGAWPIGLRDSKMLSQKR 65

Query: 68  REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENL-----QVIPRSALID 121
           RE L       A + ++  A    +D   I  A   A   A+  L      V+    L+D
Sbjct: 66  RELLEPLTLEWAPLSAVGYADATEVDSIGITAALGLAGKRALIQLHEAGVDVMASVVLLD 125

Query: 122 GRSI----PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
           G +        +  +    +K D   +S+AAAS++AKV RDRLM  A  +YP Y + S+ 
Sbjct: 126 GSTDWLSGALSVAPRVHTRVKADRDCVSVAAASVVAKVQRDRLMIEADGEYPGYHWPSNK 185

Query: 178 GYPTAKHQQVIKEKGPSCIHRLTF 201
           GY +A H   I++ G + +HR T+
Sbjct: 186 GYGSAAHFDAIRQLGATELHRHTW 209


>gi|212716712|ref|ZP_03324840.1| hypothetical protein BIFCAT_01647 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660416|gb|EEB20991.1| hypothetical protein BIFCAT_01647 [Bifidobacterium catenulatum DSM
           16992]
          Length = 259

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 70/253 (27%), Positives = 113/253 (44%), Gaps = 58/253 (22%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-------------------DP 50
           P  +LE  + E+    + G DEVGRG+LAGPV+V A  +                    P
Sbjct: 7   PTLDLERAIAEQGYDVIVGFDEVGRGSLAGPVMVGAAAIWARDLDGAAGASQGGSQESSP 66

Query: 51  NNIPFGINDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKAT--------- 100
             +P G+ DSK ++  KRE +++++    A  ++ +AS+  ID+  I  A          
Sbjct: 67  LEVPKGVADSKMLTEHKREAIFDELEQWCAAWAVGAASNTEIDEWGISYALGVAALRALA 126

Query: 101 ---------------LDAIYHAVENLQVIPRSALIDG-----------RSIPE-DLPCQA 133
                          +     + E L  +   A++DG              P+  +P   
Sbjct: 127 EAERKLGIGGGESAGIAGSSESSEALNNLKIGAILDGPNDYITKALNTFDAPDVPIPADV 186

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK--KYPDYGFDSHVGYPTAKHQQVIKEK 191
              +KGD    ++A A++IAKVTRDRLM       +Y  Y + ++ GY +A H+  I E 
Sbjct: 187 TCKVKGDRHCATVATAAVIAKVTRDRLMVKLAAQPQYAPYEWANNKGYGSAAHRDAIAEF 246

Query: 192 GPSCIHRLTFRPL 204
           GPS +HRL++  +
Sbjct: 247 GPSDLHRLSWHLV 259


>gi|312133301|ref|YP_004000640.1| rnhb [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772513|gb|ADQ02001.1| RnhB [Bifidobacterium longum subsp. longum BBMN68]
          Length = 275

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 118/271 (43%), Gaps = 81/271 (29%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII-------LDPNN--------- 52
           P  +LE ++  +    +AG DEVGRGALAGPV+V  A I       LD ++         
Sbjct: 4   PTLDLERILAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63

Query: 53  --IPFGINDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAV- 108
             +P G+ DSK ++  +RE +++++    A  ++  AS+  ID+  I  A   A   A+ 
Sbjct: 64  LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123

Query: 109 ----------------------------------------ENLQVIPRSALI-------- 120
                                                   E+++ +P+ A I        
Sbjct: 124 QVERELGLRLGGGLTAKKAAGEIVEGRPGDSVGESIGNCGESVRALPKVAGILDGPSDYI 183

Query: 121 -------DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK---KYPD 170
                  D   +P  +P      +KGD    ++A A++IAKVTRDRLM    +   +Y  
Sbjct: 184 TKALNTFDAPDVP--IPADITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRYAA 241

Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           Y +  + GY +A H+  I E GP+ +HR+++
Sbjct: 242 YEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 272


>gi|145636492|ref|ZP_01792160.1| ribonuclease HII [Haemophilus influenzae PittHH]
 gi|145270317|gb|EDK10252.1| ribonuclease HII [Haemophilus influenzae PittHH]
          Length = 111

 Score =  161 bits (407), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 48/106 (45%), Positives = 67/106 (63%)

Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160
           + A+  AV++L++ P   L+DG  IP+DL   A AV+KGDSI   I+AASI+AKV RD+ 
Sbjct: 1   MLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKGDSIVAEISAASILAKVARDQE 60

Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           M    K+YP+Y F  H GYPT  H + + E G    HR +F P++ 
Sbjct: 61  MEELDKQYPEYAFAKHKGYPTKLHLEKLAEFGTLPQHRRSFAPVKK 106


>gi|207108743|ref|ZP_03242905.1| ribonuclease HII [Helicobacter pylori HPKX_438_CA4C1]
          Length = 189

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 87/179 (48%), Gaps = 11/179 (6%)

Query: 37  LAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS--AIISISSASHQY 90
           +AG + VA +  D       +  G+ DSKK+S KKR  L +KI +       +   S + 
Sbjct: 1   MAGSLFVAGVACDEKTALEFLKMGLKDSKKLSQKKRFFLEDKIKTHGEVKFFVVKKSAEA 60

Query: 91  IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIKGDSISLSIA 147
           ID   +      AI   +EN   +     IDG +   + +  P     +IKGD     IA
Sbjct: 61  IDSLGLGACLRLAIEEILENGCSLANEIKIDGNTAFGLNKRYPHIQ-TIIKGDETIAQIA 119

Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
            AS++AK  +DR MR  H  + +YG+D + GY T +H + I + G +  HR +F  L+N
Sbjct: 120 MASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHRHSF-TLKN 177


>gi|145640735|ref|ZP_01796318.1| ribonuclease HII [Haemophilus influenzae R3021]
 gi|145274661|gb|EDK14524.1| ribonuclease HII [Haemophilus influenzae 22.4-21]
          Length = 111

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 46/106 (43%), Positives = 66/106 (62%)

Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160
           + A+  AV++L++ P   L+DG  IP+DL     AV+KGDS+   I+AASI+AKV RD+ 
Sbjct: 1   MLAMTRAVKSLKIQPHFVLVDGNKIPKDLAIPVQAVVKGDSLVAEISAASILAKVARDQE 60

Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           M    K+YP+Y F  H GYPT  H + + E G    HR +F P++ 
Sbjct: 61  MEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRRSFAPVKK 106


>gi|266625575|ref|ZP_06118510.1| ribonuclease HII [Clostridium hathewayi DSM 13479]
 gi|288862520|gb|EFC94818.1| ribonuclease HII [Clostridium hathewayi DSM 13479]
          Length = 130

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/127 (43%), Positives = 74/127 (58%), Gaps = 3/127 (2%)

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140
            ++     + ID+ NI +AT +A+  AV  L   P+  L D  +IP  L      +IKGD
Sbjct: 5   FAVGVVGPERIDEINILQATYEAMRLAVSQLTNPPQVLLNDAVTIP-GLDILQVPIIKGD 63

Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200
           + S+SIAA SI+AKVTRD +M    K +P+YGF  H GY TA H   +KE GP  IHR +
Sbjct: 64  AKSVSIAAGSIMAKVTRDHMMVEYDKLFPEYGFAKHKGYGTAAHIAALKEFGPCAIHRRS 123

Query: 201 FRPLRNL 207
           F  +RN 
Sbjct: 124 F--IRNF 128


>gi|240103148|ref|YP_002959457.1| ribonuclease HII [Thermococcus gammatolerans EJ3]
 gi|239910702|gb|ACS33593.1| Ribonuclease HII (rnhB) [Thermococcus gammatolerans EJ3]
          Length = 226

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 100/206 (48%), Gaps = 28/206 (13%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS-AI 80
           +AGIDE GRG + GP+V+AA+++D   +      G+ DSKK++  +RE L+++I +    
Sbjct: 5   IAGIDEAGRGPVIGPMVIAAVVVDEEKLKSLEELGVRDSKKLTPGRRERLFDEIIAQLDD 64

Query: 81  ISISSASHQYIDKHNI--HKATLDAIYHAVENLQVIPRSALIDGRSIPED---------- 128
             I     + ID   +  ++  ++    A+ +L+V P    ID   + E           
Sbjct: 65  YVIIELWPEEIDSREVTLNEFEVENFSKALNSLKVKPDVVYIDAADVKEGRFGEAIGKLL 124

Query: 129 -LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQ 186
               +  A  + D   + ++AASI+AKV RDR +    ++Y + G     GYP+  + + 
Sbjct: 125 KFKAEIVAEHRADDKFVPVSAASILAKVVRDRAIEKLKEEYGEIG----SGYPSDPRTRD 180

Query: 187 VI----KEKG-PSCIHRLTFRPLRNL 207
            +    +E G    I R T++ +  +
Sbjct: 181 FLERYYREHGDFPPIVRRTWKTVEKI 206


>gi|242398404|ref|YP_002993828.1| Ribonuclease HII [Thermococcus sibiricus MM 739]
 gi|259494074|sp|C6A1I4|RNH2_THESM RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|242264797|gb|ACS89479.1| Ribonuclease HII [Thermococcus sibiricus MM 739]
          Length = 224

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 99/205 (48%), Gaps = 28/205 (13%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITS-SAIIS 82
           GIDE GRG + GP+V+AA+++D +        G+ DSKK+S KKREEL+EKI        
Sbjct: 5   GIDEAGRGPVVGPLVIAAVVIDESKIEKFEALGVKDSKKLSPKKREELFEKIIELVDDYF 64

Query: 83  ISSASHQYIDKHNIHKATLDAIYHA--VENLQVIPRSALIDGRSIPED-----------L 129
           I   S + IDK        +    A  + +L++ P    ID   + E+            
Sbjct: 65  ILELSPEDIDKREGTMNDFEVENFAKVLNSLKIKPDLVYIDAADVNEERFGIVVREKLSF 124

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-----AKH 184
             +  A  K DS  + +AAASI+AKVTRD+ +    + Y + G     GYP+        
Sbjct: 125 YPKIIAEHKADSKYIPVAAASILAKVTRDKAIERLKEIYGNIG----SGYPSDPITRKFL 180

Query: 185 QQVIKEKG-PSCIHRLTFRPLRNLS 208
           ++  KE G    + R +++ L+ + 
Sbjct: 181 EEYYKEHGSFPPVVRRSWKTLKKIE 205


>gi|322379000|ref|ZP_08053403.1| ribonuclease HII [Helicobacter suis HS1]
 gi|322380765|ref|ZP_08054871.1| ribonuclease HII [Helicobacter suis HS5]
 gi|321146769|gb|EFX41563.1| ribonuclease HII [Helicobacter suis HS5]
 gi|321148492|gb|EFX42989.1| ribonuclease HII [Helicobacter suis HS1]
          Length = 194

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/186 (30%), Positives = 84/186 (45%), Gaps = 10/186 (5%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITSS--A 79
           + GIDE GRG L G + VA +             G+ +SK++  +KR E  ++I      
Sbjct: 2   ILGIDEAGRGCLCGSLFVAGVGCTAEIAAFFNKQGLKESKQLKREKRFEFAKQIQEHREV 61

Query: 80  IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF---AV 136
           +  + + S   ID   +     +AI   V     I     +DG ++            A+
Sbjct: 62  LSLVVAKSALEIDTKGLSVCVQEAITQIVLRFPHIL-HVKLDGNTLFHLHFSHLRYFEAI 120

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196
           IKGD     IA ASI+AK  +D+ M    K YP YGF  H GY T +H++ I   G    
Sbjct: 121 IKGDCQITQIAMASILAKAAKDKEMLALDKAYPAYGFVRHCGYGTQEHRKAITHLGYLKE 180

Query: 197 HRLTFR 202
           HR +F+
Sbjct: 181 HRKSFK 186


>gi|296453566|ref|YP_003660709.1| ribonuclease H [Bifidobacterium longum subsp. longum JDM301]
 gi|296182997|gb|ADG99878.1| Ribonuclease H [Bifidobacterium longum subsp. longum JDM301]
          Length = 275

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/271 (26%), Positives = 116/271 (42%), Gaps = 81/271 (29%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII-------LDPNN--------- 52
           P  +LE  +  +    + G DEVGRGALAGPV+V  A I       LD ++         
Sbjct: 4   PTLDLERSLAAQGYDLITGFDEVGRGALAGPVMVGCAAIWACDLAPLDGDDSAELSGRTY 63

Query: 53  --IPFGINDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAV- 108
             +P G+ DSK ++  +RE +++++    A  ++  AS+  ID+  I  A   A   A+ 
Sbjct: 64  LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123

Query: 109 ----------------------------------------ENLQVIPRSALI-------- 120
                                                   E+++ +P+ A I        
Sbjct: 124 QVERELGLRLGGGLTAKKAAGEIVEGHPGDSVGESIGNCGESVRALPKVAGILDGPSDYI 183

Query: 121 -------DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK---KYPD 170
                  D   +P  +P      +KGD    ++A A++IAKVTRDRLM    +   +Y  
Sbjct: 184 TKALNTFDAPDVP--IPADITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRYAV 241

Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           Y +  + GY +A H+  I E GP+ +HR+++
Sbjct: 242 YEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 272


>gi|32265505|ref|NP_859537.1| ribonuclease HII [Helicobacter hepaticus ATCC 51449]
 gi|32261553|gb|AAP76603.1| ribonuclease HII [Helicobacter hepaticus ATCC 51449]
          Length = 207

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 91/204 (44%), Gaps = 25/204 (12%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSSAI-- 80
             VAGIDE GRG + G + +A II +   I  FG  DSKK+  K+R  +Y  +  S    
Sbjct: 1   MWVAGIDEAGRGCICGGLFIAGIIANEQVIAQFGAKDSKKMLPKQRVRVYNALLDSQKRG 60

Query: 81  ---ISISSASHQYIDKHNIHKATLDAIYHAVENL-----------QVIPRSALIDGR--- 123
                ++      IDK+ +  A    I   +  L           Q  P   +IDG    
Sbjct: 61  EIGFYVAQIQAWDIDKYGLSWAMRSGIEEVLSYLGSYMLEQNILVQNQPLDIVIDGNTTF 120

Query: 124 --SIPEDLPCQ---AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
              IP  L  +      +IKGD +   I+ AS++AKV++D  M +    YP Y    + G
Sbjct: 121 GAHIPTFLAHKDVHLKTLIKGDELMPIISCASVVAKVSKDSQMYMLDNLYPQYLLAKNKG 180

Query: 179 YPTAKHQQVIKEKGPSCIHRLTFR 202
           Y T +H++ I   G    HR +F+
Sbjct: 181 YATLEHKKQIMRYGYCPHHRKSFK 204


>gi|239622462|ref|ZP_04665493.1| ribonuclease HII [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239514459|gb|EEQ54326.1| ribonuclease HII [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 279

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 66/273 (24%), Positives = 108/273 (39%), Gaps = 81/273 (29%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII-------LDPNN--------- 52
           P  +LE  +  +    +AG DEVGRGALAGPV+V  A I       LD ++         
Sbjct: 4   PTLDLERSLAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63

Query: 53  --IPFGINDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVE 109
             +P G+ DSK ++  +RE +++++    A  ++  AS+  ID+  I  A   A   A+ 
Sbjct: 64  LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNAEIDEWGITYALGVAALRALS 123

Query: 110 NLQVIPRSALIDGRSIP-----------EDLPC------------------QAFAVIKGD 140
            ++      L    +I            E  P                   +   ++ G 
Sbjct: 124 QVERELGLRLGGESTIKKASGESAGEIVEGRPGGSVGEFIGNCGGSVRALPKVAGILDGP 183

Query: 141 SISLSIAAASIIA-----------------------------KVTRDRLMRIAHK---KY 168
           S  ++ A  +  A                             KVTRDRLM    +   +Y
Sbjct: 184 SDYITKALNTFDAPDVPIPADITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRY 243

Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             Y +  + GY +A H+  I E GP+ +HR+++
Sbjct: 244 AAYEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 276


>gi|290769753|gb|ADD61528.1| putative protein [uncultured organism]
          Length = 279

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 66/273 (24%), Positives = 108/273 (39%), Gaps = 81/273 (29%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII-------LDPNN--------- 52
           P  +LE  +  +    +AG DEVGRGALAGPV+V  A I       LD ++         
Sbjct: 4   PTLDLERSLAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63

Query: 53  --IPFGINDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVE 109
             +P G+ DSK ++  +RE +++++    A  ++  AS+  ID+  I  A   A   A+ 
Sbjct: 64  LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123

Query: 110 NLQVIPRSALIDGRSIP-----------EDLPCQAF------------------AVIKGD 140
            ++      L    +I            E  P  +                    ++ G 
Sbjct: 124 QVERELGLRLGGESTIKKASGESAGKIVEGRPGDSVGESIGNCGESVRALPKVAGILDGP 183

Query: 141 SISLSIAAASIIA-----------------------------KVTRDRLMRIAHK---KY 168
           S  ++ A  +  A                             KVTRDRLM    +   +Y
Sbjct: 184 SDYITKALNTFDAPDVPIPADITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRY 243

Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             Y +  + GY +A H+  I E GP+ +HR+++
Sbjct: 244 AAYEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 276


>gi|332157881|ref|YP_004423160.1| ribonuclease HII [Pyrococcus sp. NA2]
 gi|331033344|gb|AEC51156.1| ribonuclease HII [Pyrococcus sp. NA2]
          Length = 219

 Score =  157 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 54/209 (25%), Positives = 101/209 (48%), Gaps = 28/209 (13%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS- 78
             + G+DE GRG + GP+V+ A+++  + +      G+ DSK+++ ++RE ++++I +  
Sbjct: 1   MRIGGVDEAGRGPVIGPLVIVAVVISEDMLSDLRSIGVRDSKQLTPEQRERIFDEIVNVL 60

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVE--NLQVIPRSALIDGRSIPE--------- 127
              S+   S Q ID  +     L+    A+   +L V P    +D   + E         
Sbjct: 61  DDYSVVVVSPQEIDNRSSSLNLLEVEKFALALNSLNVKPSRIYVDSADVDEKRFASLIRA 120

Query: 128 --DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKH 184
             +   +  A  K D+    +AAASI+AKV RDR +    ++Y D+G     GYP+  + 
Sbjct: 121 KLNYNAEVIAEHKADAKYEVVAAASILAKVIRDREIEKLKERYGDFG----SGYPSDPRT 176

Query: 185 QQVI----KEKG-PSCIHRLTFRPLRNLS 208
           ++ +    KE G    I R ++  ++ + 
Sbjct: 177 RRWLEEYYKEYGEFPPIVRRSWDTVKRIE 205


>gi|322688522|ref|YP_004208256.1| ribonuclease HII [Bifidobacterium longum subsp. infantis 157F]
 gi|320459858|dbj|BAJ70478.1| ribonuclease HII [Bifidobacterium longum subsp. infantis 157F]
          Length = 279

 Score =  157 bits (398), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 66/273 (24%), Positives = 109/273 (39%), Gaps = 81/273 (29%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII-------LDPNN--------- 52
           P  +LE ++  +    +AG DEVGRGALAGPV+V  A I       LD ++         
Sbjct: 4   PTLDLERILAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63

Query: 53  --IPFGINDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVE 109
             +P G+ DSK ++  +RE +++++    A  ++  AS+  ID+  I  A   A   A+ 
Sbjct: 64  LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNAEIDEWGITYALGVAALRALS 123

Query: 110 NLQVIPRSALIDGRSIP-----------EDLPC------------------QAFAVIKGD 140
            ++      L    +I            E  P                   +   ++ G 
Sbjct: 124 QVERELGLRLGGESTIKKASGESAGEIVEGRPGGSVGEFIGNCGGSVRALPKVAGILDGP 183

Query: 141 SISLSIAAASIIA-----------------------------KVTRDRLMRIAHK---KY 168
           S  ++ A  +  A                             KVTRDRLM    +   +Y
Sbjct: 184 SDYITKALNTFDAPDVPIPADITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRY 243

Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             Y +  + GY +A H+  I E GP+ +HR+++
Sbjct: 244 AAYEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 276


>gi|23464878|ref|NP_695481.1| ribonuclease HII [Bifidobacterium longum NCC2705]
 gi|23325467|gb|AAN24117.1| probable ribonuclease HII [Bifidobacterium longum NCC2705]
 gi|291517371|emb|CBK70987.1| RNase HII [Bifidobacterium longum subsp. longum F8]
          Length = 279

 Score =  157 bits (398), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 66/273 (24%), Positives = 109/273 (39%), Gaps = 81/273 (29%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII-------LDPNN--------- 52
           P  +LE ++  +    +AG DEVGRGALAGPV+V  A I       LD ++         
Sbjct: 4   PTLDLERILAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63

Query: 53  --IPFGINDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVE 109
             +P G+ DSK ++  +RE +++++    A  ++  AS+  ID+  I  A   A   A+ 
Sbjct: 64  LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNAEIDEWGITYALGVAALRALS 123

Query: 110 NLQVIPRSALIDGRSIP-----------EDLPC------------------QAFAVIKGD 140
            ++      L    +I            E  P                   +   ++ G 
Sbjct: 124 QVERELGLRLGGESTIKKASGESAGEIVEGRPGGSVGESIGNCGGSVRALPKVAGILDGP 183

Query: 141 SISLSIAAASIIA-----------------------------KVTRDRLMRIAHK---KY 168
           S  ++ A  +  A                             KVTRDRLM    +   +Y
Sbjct: 184 SDYITKALNTFDAPDVPIPADITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRY 243

Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             Y +  + GY +A H+  I E GP+ +HR+++
Sbjct: 244 AAYEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 276


>gi|134104117|pdb|2DFF|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-204)-C
          Length = 213

 Score =  157 bits (398), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 28/207 (13%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS-AI 80
           +AGIDE GRG + GP+V+AA+++D N++P      + DSKK++ K+RE+L+ +I      
Sbjct: 3   IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62

Query: 81  ISISSASHQYI--DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE----------- 127
             I       I   +  +++  ++    A+ +L+V P     D   + E           
Sbjct: 63  YVILELPPDVIGSREGTLNEFEVENFAKALNSLKVKPDVIYADAADVDEERFARELGERL 122

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           +   +  A  K D I   ++AASI+AKVTRDR +    ++Y + G     GYP+    + 
Sbjct: 123 NFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGYPSDPRTRA 178

Query: 188 I-----KEKG-PSCIHRLTFRPLRNLS 208
                 +E G    I R  ++ L+ ++
Sbjct: 179 FLENYYREHGEFPPIVRKGWKTLKKIT 205


>gi|332670021|ref|YP_004453029.1| ribonuclease H [Cellulomonas fimi ATCC 484]
 gi|332339059|gb|AEE45642.1| Ribonuclease H [Cellulomonas fimi ATCC 484]
          Length = 272

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 93/223 (41%), Gaps = 38/223 (17%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP----------NNIPFGIND 59
           PH   E ++       VAG+DEVGRG+LAGP                     + P G+ D
Sbjct: 20  PHLRHERVLLRDGARLVAGMDEVGRGSLAGP--------VSVGVVVVDVATRSAPRGVAD 71

Query: 60  SKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQV---IP 115
           SK ++   R  L   +    +  ++  AS + ID   I  A   A   A+E +       
Sbjct: 72  SKLLTPAARTALLPALGRWGVARAVGHASAEEIDAVGIIAALRLAGTRALETVHAAVGPV 131

Query: 116 RSALIDG----------------RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR 159
              L+DG                       P +    +K D    ++AAAS++AK  RD 
Sbjct: 132 DVVLLDGSHDWLSGPTQQDLFAAVDASAPTPPRVLTRVKADRTCATVAAASVLAKCERDA 191

Query: 160 LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           +M     ++P+Y +D + GY +  H   +++ GP  +HR ++R
Sbjct: 192 VMVDLAARHPEYRWDENKGYSSPDHLAALRDHGPCVLHRRSWR 234


>gi|315657113|ref|ZP_07909997.1| ribonuclease HII [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315492216|gb|EFU81823.1| ribonuclease HII [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 235

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/214 (33%), Positives = 105/214 (49%), Gaps = 32/214 (14%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILD------PNNI---PFGINDSKKISHKKRE 69
            E  +  + G+DEVGRGALAGPV V   +LD      P+     P G+NDSK+++ ++R 
Sbjct: 22  HEGRLPLIGGMDEVGRGALAGPVCVGVAVLDQRSLENPDFPQGFPVGLNDSKQLTARRRV 81

Query: 70  ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSI 125
            L + I +     +I  AS+  ID+  I  A   A + A+  L     +P+  L+DG   
Sbjct: 82  ALQDPIQAWVRDFAIGQASNTEIDELGIMSALRLAGWRALNELDARGHLPQRLLLDGNFD 141

Query: 126 PEDLPCQ-----------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
               P Q                    ++KGD  +  IAAA+++AKV RD  MR  H   
Sbjct: 142 YLASPRQPDLFAGAGNLVSSPEVSVETLVKGDGKAAVIAAAAVLAKVYRDAFMRSLHD-- 199

Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           P YG+  +VGY T  H+  + E G S  HR T++
Sbjct: 200 PGYGWARNVGYGTPAHKAGLAELGASVWHRKTWK 233


>gi|134104118|pdb|2DFH|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-212)-C
          Length = 221

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 28/207 (13%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS-AI 80
           +AGIDE GRG + GP+V+AA+++D N++P      + DSKK++ K+RE+L+ +I      
Sbjct: 3   IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62

Query: 81  ISISSASHQYI--DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE----------- 127
             I       I   +  +++  ++    A+ +L+V P     D   + E           
Sbjct: 63  YVILELPPDVIGSREGTLNEFEVENFAKALNSLKVKPDVIYADAADVDEERFARELGERL 122

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           +   +  A  K D I   ++AASI+AKVTRDR +    ++Y + G     GYP+    + 
Sbjct: 123 NFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGYPSDPRTRA 178

Query: 188 I-----KEKG-PSCIHRLTFRPLRNLS 208
                 +E G    I R  ++ L+ ++
Sbjct: 179 FLENYYREHGEFPPIVRKGWKTLKKIA 205


>gi|322690530|ref|YP_004220100.1| ribonuclease HII [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455386|dbj|BAJ66008.1| ribonuclease HII [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 279

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/273 (24%), Positives = 107/273 (39%), Gaps = 81/273 (29%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII-------LDPNN--------- 52
           P  +LE  +  +    +AG DEVGRGALAGPV+V  A I       LD ++         
Sbjct: 4   PTLDLERSLAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63

Query: 53  --IPFGINDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVE 109
             +P G+ DSK ++  +RE +++++    A  ++  AS+  ID+  I  A   A   A+ 
Sbjct: 64  LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123

Query: 110 NLQVIPRSAL-----------IDGRSIPEDLPC------------------QAFAVIKGD 140
            ++      L                I E  P                   +   ++ G 
Sbjct: 124 QVERELGLRLRGESTIKKASGESAGKIVEGRPGGSVGESIGNCEGSVRALPKVAGILDGP 183

Query: 141 SISLSIAAASIIA-----------------------------KVTRDRLMRIAHK---KY 168
           S  ++ A  +  A                             KVTRDRLM    +   +Y
Sbjct: 184 SDYITKALNTFDAPDVPIPADITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRY 243

Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             Y +  + GY +A H+  I E GP+ +HR+++
Sbjct: 244 AAYEWAHNKGYGSAAHRTAIAEHGPTPLHRVSW 276


>gi|317482036|ref|ZP_07941061.1| ribonuclease HII [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916603|gb|EFV38000.1| ribonuclease HII [Bifidobacterium sp. 12_1_47BFAA]
          Length = 279

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/273 (24%), Positives = 109/273 (39%), Gaps = 81/273 (29%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII-------LDPNN--------- 52
           P  +LE  +  +    +AG DEVGRGALAGPV+V  A I       LD ++         
Sbjct: 4   PTLDLERSLAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63

Query: 53  --IPFGINDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVE 109
             +P G+ DSK ++  +RE +++++    A  ++  AS+  ID+  I  A   A   A+ 
Sbjct: 64  LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123

Query: 110 NLQVI-----------PRSALIDGRSIPEDLPC------------------QAFAVIKGD 140
            ++              ++A      I E  P                   +   ++ G 
Sbjct: 124 QVERELGLRLGGGLTAKKAAGESAGKIVEGRPGGSVGESIGNCEGSVRALPKVAGILDGP 183

Query: 141 SISLSIAAASIIA-----------------------------KVTRDRLMRIAHK---KY 168
           S  ++ A  +  A                             KVTRDRLM    +   +Y
Sbjct: 184 SDYITKALNTFDAPDVPIPADITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRY 243

Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             Y +  + GY +A H+  I E GP+ +HR+++
Sbjct: 244 AAYEWAHNKGYGSAAHRTAIAEHGPTPLHRVSW 276


>gi|304389808|ref|ZP_07371767.1| ribonuclease HII [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304326984|gb|EFL94223.1| ribonuclease HII [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 235

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/214 (33%), Positives = 105/214 (49%), Gaps = 32/214 (14%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILD------PNNI---PFGINDSKKISHKKRE 69
            E  +  + G+DEVGRGALAGPV V   +LD      P+     P G+NDSK+++ ++R 
Sbjct: 22  HEGRLPLIGGMDEVGRGALAGPVCVGVAVLDQRSLDNPDFPQGFPVGLNDSKQLTARRRV 81

Query: 70  ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSI 125
            L + I +     +I  AS+  ID+  I  A   A + A+  L     +P+  L+DG   
Sbjct: 82  ALQDPIQAWVRDFAIGQASNTEIDELGIMPALRLAGWRALNELDARGHLPQRLLLDGNFD 141

Query: 126 PEDLPCQ-----------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
               P Q                    ++KGD  +  IAAA+++AKV RD  MR  H   
Sbjct: 142 YLASPRQPDLFAEAGNLVSSPEVSVETLVKGDGKAAVIAAAAVLAKVYRDAFMRSLHD-- 199

Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           P YG+  +VGY T  H+  + E G S  HR T++
Sbjct: 200 PGYGWARNVGYGTPAHKAGLAELGASVWHRKTWK 233


>gi|298346453|ref|YP_003719140.1| putative ribonuclease H [Mobiluncus curtisii ATCC 43063]
 gi|298236514|gb|ADI67646.1| possible ribonuclease H [Mobiluncus curtisii ATCC 43063]
          Length = 235

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/214 (33%), Positives = 105/214 (49%), Gaps = 32/214 (14%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILD------PNNI---PFGINDSKKISHKKRE 69
            E  +  + G+DEVGRGALAGPV V   +LD      P+     P G+NDSK+++ ++R 
Sbjct: 22  HEGRLPLIGGMDEVGRGALAGPVCVGVAVLDQRSLDNPDFPQGFPVGLNDSKQLTARRRV 81

Query: 70  ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSI 125
            L + I +     +I  AS+  ID+  I  A   A + A+  L     +P+  L+DG   
Sbjct: 82  ALQDPIQAWVRDFAIGQASNTEIDELGIMPALRLAGWRALNELDARGHLPQRLLLDGNFD 141

Query: 126 PEDLPCQ-----------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
               P Q                    ++KGD  +  IAAA+++AKV RD  MR  H   
Sbjct: 142 YLASPRQPDLFAEAGNLVSSPEVSVETLVKGDGKAAVIAAAAVLAKVYRDAFMRSLHD-- 199

Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           P YG+  +VGY T  H+  + E G S  HR T++
Sbjct: 200 PGYGWARNVGYGTPAHKAGLAELGASVWHRKTWK 233


>gi|227545838|ref|ZP_03975887.1| possible ribonuclease H [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|227213954|gb|EEI81793.1| possible ribonuclease H [Bifidobacterium longum subsp. infantis
           ATCC 55813]
          Length = 275

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/269 (24%), Positives = 108/269 (40%), Gaps = 77/269 (28%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII-------LDPNN--------- 52
           P  +LE  +  +    + G DEVGRGALAGPV+V  A I       LD ++         
Sbjct: 4   PTLDLERSLAAQGYDLITGFDEVGRGALAGPVMVGCAAIWACDLAPLDGDDSAELSGRTY 63

Query: 53  --IPFGINDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVE 109
             +P G+ DSK ++  +RE +++++    A  ++  AS+  ID+  I  A   A   A+ 
Sbjct: 64  LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123

Query: 110 NLQVIPRSALIDGRS-------IPEDLPC------------------QAFAVIKGDSISL 144
            ++      L  G +       I E  P                   +   ++ G S  +
Sbjct: 124 QVERELGLRLGGGLTAKKAAGEIVEGRPGGSVGESIGNCGGSVRALPKVAGILDGPSDYI 183

Query: 145 SIAAASIIA-----------------------------KVTRDRLMRIAHK---KYPDYG 172
           + A  +  A                             KVTRDRLM    +   +Y  Y 
Sbjct: 184 TKALNTFDAPDVPIPADITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRYAAYE 243

Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           +  + GY +A H+  I E GP+ +HR+++
Sbjct: 244 WAHNKGYGSAAHRAAIAEHGPTPLHRVSW 272


>gi|46190774|ref|ZP_00121089.2| COG0164: Ribonuclease HII [Bifidobacterium longum DJO10A]
 gi|189439885|ref|YP_001954966.1| ribonuclease HII [Bifidobacterium longum DJO10A]
 gi|189428320|gb|ACD98468.1| Ribonuclease HII [Bifidobacterium longum DJO10A]
          Length = 279

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/273 (23%), Positives = 107/273 (39%), Gaps = 81/273 (29%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII-------LDPNN--------- 52
           P  +LE  +  +    + G DEVGRGALAGPV+V  A I       LD ++         
Sbjct: 4   PTLDLERSLAAQGYDLITGFDEVGRGALAGPVMVGCAAIWACDLAPLDGDDSAELSGRTY 63

Query: 53  --IPFGINDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVE 109
             +P G+ DSK ++  +RE +++++    A  ++  AS+  ID+  I  A   A   A+ 
Sbjct: 64  LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123

Query: 110 NLQVIPRSALIDGRSIP-----------EDLPC------------------QAFAVIKGD 140
            ++      L    +I            E  P                   +   ++ G 
Sbjct: 124 QVERELGLRLGGESTIKKASGESAGKIVEGRPGGSVGESIGNCEGSVRALPKVAGILDGP 183

Query: 141 SISLSIAAASIIA-----------------------------KVTRDRLMRIAHK---KY 168
           S  ++ A  +  A                             KVTRDRLM    +   +Y
Sbjct: 184 SDYITKALNTFDAPDVPIPADITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRY 243

Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
             Y +  + GY +A H+  I E GP+ +HR+++
Sbjct: 244 AAYEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 276


>gi|296129323|ref|YP_003636573.1| Ribonuclease H [Cellulomonas flavigena DSM 20109]
 gi|296021138|gb|ADG74374.1| Ribonuclease H [Cellulomonas flavigena DSM 20109]
          Length = 279

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 60/229 (26%), Positives = 95/229 (41%), Gaps = 46/229 (20%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP------------NNIPFGI 57
           PH   E  +    +  VAG+DEVGRG+LA           P             + P G+
Sbjct: 30  PHLRHERALLRTGLRYVAGMDEVGRGSLA----------GPVSVGVVVVDVGTRSAPRGV 79

Query: 58  NDSKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHA---VENLQV 113
            DSK ++   R  L   +    +  ++  AS   ID   I  A   A   A   V  +  
Sbjct: 80  ADSKLLTPAARAALLPSLGRWGVARAVGHASPTEIDDRGIVAALRLAGTRALRSVLEVVE 139

Query: 114 IPRSALIDG-------------------RSIPEDLPCQAFAV-IKGDSISLSIAAASIIA 153
              + ++DG                    +   DL   A  + +K D    ++AAAS++A
Sbjct: 140 QVDAVVLDGSHDWLTPPEPDLFGTQSELFAPSPDLRVPAVHLRVKADRSCATVAAASVLA 199

Query: 154 KVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           K  RD LM      +P+Y +D + GY + +H   ++E GP+ +HR ++R
Sbjct: 200 KCERDALMVQHAAAHPEYRWDENKGYASPEHVAALRELGPTPLHRRSWR 248


>gi|18978153|ref|NP_579510.1| ribonuclease HII [Pyrococcus furiosus DSM 3638]
 gi|24638181|sp|Q8U036|RNH2_PYRFU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|18893958|gb|AAL81905.1| RNaseH II [Pyrococcus furiosus DSM 3638]
          Length = 224

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 99/207 (47%), Gaps = 28/207 (13%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI- 80
           + GIDE GRG   GP+VVA +++D  NI      G+ DSK+++  +R+ L+ +ITS A  
Sbjct: 3   IGGIDEAGRGPAIGPLVVATVVVDEKNIEKLRNIGVKDSKQLTPHERKNLFSQITSIADD 62

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVE--NLQVIP-----RSALIDGRSI------PE 127
             I   S + ID  +     L+    A+   +LQ+ P      +A +D            
Sbjct: 63  YKIVIVSPEEIDNRSGTMNELEVEKFALALNSLQIKPALIYADAADVDANRFASLIERRL 122

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQ 186
           +   +  A  K D+    ++AASI+AKV RD  +    K+Y D+G     GYP+  K ++
Sbjct: 123 NYKAKIIAEHKADAKYPVVSAASILAKVVRDEEIEKLKKQYGDFG----SGYPSDPKTKK 178

Query: 187 VIKEK-----GPSCIHRLTFRPLRNLS 208
            ++E          I R T+  +R + 
Sbjct: 179 WLEEYYKKHNSFPPIVRRTWETVRKIE 205


>gi|269795662|ref|YP_003315117.1| ribonuclease HII [Sanguibacter keddieii DSM 10542]
 gi|269097847|gb|ACZ22283.1| ribonuclease HII [Sanguibacter keddieii DSM 10542]
          Length = 246

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 103/223 (46%), Gaps = 27/223 (12%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKIS 64
           P     E+E  +       +AG+DEVGRGALAGPV V   ++D +    P G+ DSK ++
Sbjct: 9   PVFADLEVETGMLAAGARRLAGMDEVGRGALAGPVSVGVCVVDLSTGPCPVGLTDSKVLT 68

Query: 65  HKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIP---RSALI 120
            + R E    I   ++  ++ SAS   ID   I +A   A   A+  +        + L+
Sbjct: 69  ARARTEYLPLIDDWSVATAVGSASAAEIDAVGIVRALRLAGQRALVAVARTAGPVDTVLL 128

Query: 121 DGRSI----PED-----------------LPCQAFAVIKGDSISLSIAAASIIAKVTRDR 159
           DG       PE                  L  +    +K D    S+AAAS++AK  RD 
Sbjct: 129 DGSHDWLTEPEPDLLTMLEGEEVAAPDGYLAPRVQTRVKADLSCASVAAASVVAKCERDA 188

Query: 160 LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            M    K +P YG+  + GY +A+H   + E GPS  HR+++R
Sbjct: 189 SMVQLAKDHPHYGWIGNKGYGSAQHVAALGEHGPSPFHRVSWR 231


>gi|154151483|ref|YP_001405101.1| ribonuclease HII [Candidatus Methanoregula boonei 6A8]
 gi|166226624|sp|A7I9P7|RNH2_METB6 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|154000035|gb|ABS56458.1| ribonuclease HII [Methanoregula boonei 6A8]
          Length = 213

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 25/203 (12%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAIISI 83
           + G+DE G+G++ GP+V+A + +    +   FG+ DSK++S  +RE L+  I     ++ 
Sbjct: 2   ICGVDEAGKGSVLGPMVIAGVGVGSTEMIDGFGLRDSKQLSPSERERLFVLIKKKCKVAT 61

Query: 84  SSASHQYID--KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL-----------P 130
              S   ID  +  +   T  A  HAV   Q+ P  A +D   +               P
Sbjct: 62  VVISAAEIDAFRREMTLNTCVARAHAVVIAQLAPEIAYVDACDVNPFRYAETVRGYLSSP 121

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIK 189
           C+  +    DS    ++AASI+AKVTRDR +    KKY   G     GYP+  +    + 
Sbjct: 122 CEIVSEHHADSTYPVVSAASIVAKVTRDREIAKLAKKYGQIG----SGYPSDPETIAYLN 177

Query: 190 EK-----GPSCIHRLTFRPLRNL 207
                   P  I R +++ +  L
Sbjct: 178 AYIDEHRIPPPIARKSWKTVSTL 200


>gi|14278500|pdb|1IO2|A Chain A, Crystal Structure Of Type 2 Ribonuclease H From
           Hyperthermophilic Archaeon, Thermococcus Kodakaraensis
           Kod1
          Length = 213

 Score =  154 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 28/207 (13%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS-AI 80
           +AGIDE GRG + GP+V+AA+++D N++P      + DSKK++ K+RE+L+ +I      
Sbjct: 3   IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62

Query: 81  ISISSASHQYI--DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE----------- 127
             I       I   +  +++  ++    A+ +L+V P     D   + E           
Sbjct: 63  YVILELPPDVIGSREGTLNEFEVENFAKALNSLKVKPDVIYADAADVDEERFARELGERL 122

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           +   +  A  K D I   ++AASI+AKVTRDR +    ++Y + G     GYP+    + 
Sbjct: 123 NFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGYPSDPRTRA 178

Query: 188 I-----KEKG-PSCIHRLTFRPLRNLS 208
                 +E G    I R  ++ L+ ++
Sbjct: 179 FLENYYREHGEFPPIVRKGWKTLKKIA 205


>gi|57640740|ref|YP_183218.1| ribonuclease HII [Thermococcus kodakarensis KOD1]
 gi|7227922|sp|O74035|RNH2_PYRKO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|3551209|dbj|BAA32803.1| ribonuclease HII [Thermococcus kodakaraensis]
 gi|57159064|dbj|BAD84994.1| ribonuclease HII [Thermococcus kodakarensis KOD1]
          Length = 228

 Score =  154 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 28/207 (13%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS-AI 80
           +AGIDE GRG + GP+V+AA+++D N++P      + DSKK++ K+RE+L+ +I      
Sbjct: 3   IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62

Query: 81  ISISSASHQYI--DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE----------- 127
             I       I   +  +++  ++    A+ +L+V P     D   + E           
Sbjct: 63  YVILELPPDVIGSREGTLNEFEVENFAKALNSLKVKPDVIYADAADVDEERFARELGERL 122

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           +   +  A  K D I   ++AASI+AKVTRDR +    ++Y + G     GYP+    + 
Sbjct: 123 NFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGYPSDPRTRA 178

Query: 188 I-----KEKG-PSCIHRLTFRPLRNLS 208
                 +E G    I R  ++ L+ ++
Sbjct: 179 FLENYYREHGEFPPIVRKGWKTLKKIA 205


>gi|229818328|ref|ZP_04448609.1| hypothetical protein BIFANG_03630 [Bifidobacterium angulatum DSM
           20098]
 gi|229784198|gb|EEP20312.1| hypothetical protein BIFANG_03630 [Bifidobacterium angulatum DSM
           20098]
          Length = 239

 Score =  154 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 112/234 (47%), Gaps = 41/234 (17%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKK 62
           P  +LE  + ++    + G DEVGRG+LAGPV+V A  +   ++       P G+ DSK 
Sbjct: 4   PTLDLEHTLADRQYDVIVGFDEVGRGSLAGPVMVGACAIRAQDVRDGAKEVPQGVADSKM 63

Query: 63  ISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI-----PR 116
           ++  +RE + +++    A  ++ +AS+  ID+  I  A   A   A+  ++         
Sbjct: 64  LTEHRREAIVDELKDWSAAWAVGAASNTEIDEWGISYALGVAALRALAEVERTLGIGDDG 123

Query: 117 SALIDGRSI----------PEDLPCQAF---------------AVIKGDSISLSIAAASI 151
           +A+I G             P D   +A                  +KGD    ++AAA++
Sbjct: 124 TAVIGGVKTRASVGAILDGPNDYITKALNTFEAPVVPVPADVVTKVKGDQHCATVAAAAV 183

Query: 152 IAKVTRDRLMRIA---HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           IAKVTRDRLM        +Y  Y ++ + GY +  H+  I + GP+ +HR++++
Sbjct: 184 IAKVTRDRLMVSIAHSDPQYAPYEWEHNKGYGSKAHRAAIAQYGPTALHRISWK 237


>gi|134104116|pdb|2DFE|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-200)-C
          Length = 209

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 28/206 (13%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS-AI 80
           +AGIDE GRG + GP+V+AA+++D N++P      + DSKK++ K+RE+L+ +I      
Sbjct: 3   IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62

Query: 81  ISISSASHQYI--DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE----------- 127
             I       I   +  +++  ++    A+ +L+V P     D   + E           
Sbjct: 63  YVILELPPDVIGSREGTLNEFEVENFAKALNSLKVKPDVIYADAADVDEERFARELGERL 122

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           +   +  A  K D I   ++AASI+AKVTRDR +    ++Y + G     GYP+    + 
Sbjct: 123 NFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGYPSDPRTRA 178

Query: 188 I-----KEKG-PSCIHRLTFRPLRNL 207
                 +E G    I R  ++  +++
Sbjct: 179 FLENYYREHGEFPPIVRKGWKTTQDM 204


>gi|315655024|ref|ZP_07907928.1| ribonuclease HII [Mobiluncus curtisii ATCC 51333]
 gi|315490680|gb|EFU80301.1| ribonuclease HII [Mobiluncus curtisii ATCC 51333]
          Length = 236

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/214 (33%), Positives = 105/214 (49%), Gaps = 32/214 (14%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILD------PNNI---PFGINDSKKISHKKRE 69
            E  +  + G+DEVGRGALAGPV V   ++D      P+     P G+NDSK+++ ++R 
Sbjct: 23  HEGRLPLIGGMDEVGRGALAGPVCVGVAVVDQRSLENPDFPQGFPVGLNDSKQLTARRRV 82

Query: 70  ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSI 125
            L + I +     +I  AS+  ID+  I  A   A + A+  L     +P+  L+DG   
Sbjct: 83  ALQDPIQAWVRDFAIGQASNTEIDELGIMPALRLAGWRALNELDARGHLPQRLLLDGNFD 142

Query: 126 PEDLPCQ-----------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
               P Q                    ++KGD  +  IAAA+++AKV RD  MR  H   
Sbjct: 143 YLASPRQPDLFAGAGNLVSSPEVSVETLVKGDGKAAVIAAAAVLAKVYRDAFMRSLHD-- 200

Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           P YG+  +VGY T  H+  + E G S  HR T++
Sbjct: 201 PGYGWTRNVGYGTPAHKAGLAELGASVWHRKTWK 234


>gi|224006103|ref|XP_002292012.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972531|gb|EED90863.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 341

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 112/257 (43%), Gaps = 63/257 (24%)

Query: 12  FELEAMVREKNMWPVAGIDEVG-RGALAGPVVVAAI--------ILDPN----------- 51
             LE  +  +    V G D+ G  G +AGPVVVA+         +L  +           
Sbjct: 83  LALETDLHSRGYQFVIGSDDSGGAGCIAGPVVVASCCLLQPFSAVLPLDVSTKQSTAADK 142

Query: 52  -------NIPFGINDSKKISHKKREELYEKITSS---AIISISSASHQYIDKHNIHKATL 101
                   I   +NDSK ++ ++R ++Y  I +      +S++  S Q ID  N+ +AT 
Sbjct: 143 LLSQSEMEIMAIVNDSKTLTPQQRIDVYNVICAHPDVFAVSVAQRSPQEIDDINLTRATQ 202

Query: 102 DAIYHAVE------NLQVIPRSALIDGRSIPEDLPCQ----------------------- 132
            A   ++E      NL      A++DG+  P+    Q                       
Sbjct: 203 LAFAESIESLVENYNLPFDKIYAIVDGKVSPKLYALQSSDTESSMQQQQSTQQSQQAAPK 262

Query: 133 ---AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                    GD+   ++A +SI+A+V+RD ++   H +YP YGFD ++GY + +H + + 
Sbjct: 263 RFSVRPYTNGDANVFTVALSSIVARVSRDAIIAELHDQYPSYGFDENLGYGSREHVEAVH 322

Query: 190 EKGP-SCIHRLTFRPLR 205
             G  + +HRL+F+ ++
Sbjct: 323 RLGALTGVHRLSFKQVK 339


>gi|213029071|ref|ZP_03343518.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 109

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 47/104 (45%), Positives = 61/104 (58%), Gaps = 1/104 (0%)

Query: 103 AIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162
           A+  AV  L + P   LIDG   PE LP  + AV+KGDS    I+AASI+AKVTRD  M 
Sbjct: 1   AMQRAVAGLHIAPEYVLIDGNRCPE-LPVPSMAVVKGDSRVAEISAASILAKVTRDAEMA 59

Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
                +P YGF  H GYPTA H + + + G +  HR +F P++ 
Sbjct: 60  ALDIVFPQYGFAQHKGYPTAFHLEKLAQYGATAHHRRSFAPVKR 103


>gi|213691335|ref|YP_002321921.1| Ribonuclease H [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213522796|gb|ACJ51543.1| Ribonuclease H [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457405|dbj|BAJ68026.1| ribonuclease HII [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 279

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 71/275 (25%), Positives = 117/275 (42%), Gaps = 85/275 (30%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII-------LDPNN--------- 52
           P  +LE  +  +    + G DEVGRGALAGPV+V  A I       LD ++         
Sbjct: 4   PTLDLERSLAAQGYDLITGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63

Query: 53  --IPFGINDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNI------------- 96
             +P G+ DSK ++  +RE +++++    A  ++  AS+  ID+  I             
Sbjct: 64  LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123

Query: 97  ----------------HKATLDAIYHAVEN----------------LQVIPRSALI---- 120
                            KA++++    VE                 ++ +P+ A I    
Sbjct: 124 QVERELGLRLGGRLAARKASMESAGEIVEGHPGDSVGESIGNCRESVRALPKVAGILDGP 183

Query: 121 -----------DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK-- 167
                      D   +P  +P      +KGD    ++A A++IAKVTRDRLM    +   
Sbjct: 184 SDYITKALNTFDAPDVP--IPADITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNP 241

Query: 168 -YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            Y  Y +  + GY +A H+  I E GP+ +HR+++
Sbjct: 242 CYAAYEWAHNKGYGSAAHRTAIAEHGPTPLHRVSW 276


>gi|294623977|ref|ZP_06702767.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292601724|gb|EFF45671.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 132

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 47/102 (46%), Positives = 64/102 (62%)

Query: 104 IYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163
           +  AVE +  +   A IDG  +P+ LPC A A+I GD++  +I AASI+AKVTRDRLM  
Sbjct: 1   MRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALDRAIMAASIVAKVTRDRLMHE 60

Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
            H ++P+Y FD H GY T  H   ++  GP   HR +F P+R
Sbjct: 61  LHTRHPEYRFDQHKGYSTPVHLAALQTHGPCPQHRRSFAPVR 102


>gi|239917439|ref|YP_002956997.1| ribonuclease HII [Micrococcus luteus NCTC 2665]
 gi|281414071|ref|ZP_06245813.1| ribonuclease HII [Micrococcus luteus NCTC 2665]
 gi|239838646|gb|ACS30443.1| ribonuclease HII [Micrococcus luteus NCTC 2665]
          Length = 250

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 65/198 (32%), Positives = 97/198 (48%), Gaps = 21/198 (10%)

Query: 25  PVAGIDEVGRGALAGPVVV--AAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81
            VAG+DEVGRGALAGPVVV   A+ L        + DSK ++ ++R  L  +I   A  +
Sbjct: 36  LVAGMDEVGRGALAGPVVVGVCAVWLPAAGQIPAVRDSKALTDRRRRALVPQIEDWAAGV 95

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENL----QVIPRSALIDGRSI------------ 125
           ++  AS   ID H +  A   A   A   L       P + ++DGR              
Sbjct: 96  ALGEASPAEIDAHGVSAALGLAGRRAWAALCAAVGQEPVALVLDGRDDWLSRSDPDAGPA 155

Query: 126 --PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
             P  LP     +++ +    ++AAASI AKV RD +M     ++P YG+  + GY +A 
Sbjct: 156 PAPRPLPPVPTMLVRAEDRCATVAAASIAAKVARDDVMIALDAEHPGYGWAGNKGYGSAA 215

Query: 184 HQQVIKEKGPSCIHRLTF 201
           H+  + E+G S  HR ++
Sbjct: 216 HRAALTERGASEQHRRSW 233


>gi|78047020|ref|YP_363195.1| ribonuclease HII [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78035450|emb|CAJ23095.1| ribonuclease HII [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 129

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 47/102 (46%), Positives = 64/102 (62%)

Query: 104 IYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163
           +  AVE +  +   A IDG  +P+ LPC A A+I GD++  +I AASI+AKVTRDRLM  
Sbjct: 1   MRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALDRAIMAASIVAKVTRDRLMHE 60

Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
            H ++P+Y FD H GY T  H   ++  GP   HR +F P+R
Sbjct: 61  LHTRHPEYRFDQHKGYSTPVHLAALQTHGPCPQHRRSFAPVR 102


>gi|77386118|gb|ABA77535.1| ribonuclease HII [Campylobacter jejuni]
          Length = 159

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 7/165 (4%)

Query: 41  VVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKAT 100
           +++AA  L  N    G+ DSKK+S KKREELYE I  ++   I + S + ID   +    
Sbjct: 1   MMMAACKL--NKKLDGLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQIDALGLSTCL 58

Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ-AFAVIKGDSISLSIAAASIIAKVTRDR 159
              +    ++ +      L DG +   +L        IK D+  L ++AASI+AKV++DR
Sbjct: 59  KTGLKLIKKHFKTENNF-LYDGNT---NLGINGIKTQIKADASILQVSAASILAKVSKDR 114

Query: 160 LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +M    K +P Y F+ +  Y T  H+++I + G   +HR +F+ L
Sbjct: 115 VMNFLAKDFPCYEFEKNKAYGTKAHKELIAKFGICKLHRKSFKLL 159


>gi|4514315|dbj|BAA75362.1| RNaseH [Bacillus halodurans]
          Length = 192

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 79/139 (56%), Gaps = 3/139 (2%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65
           +        E  +  K    VAG+DEVGRG LAGPVV AA+IL  +    G+ DSKK++ 
Sbjct: 56  MEHEEMLAYEKDLWAKGYEHVAGLDEVGRGPLAGPVVTAAVILPKDVQLPGLTDSKKLAK 115

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
           + RE  Y++I   A+  S++      ID+ NI++AT   +  A++ L V P + L+D  +
Sbjct: 116 ETRESFYDRIKEVALAWSVAIVPVTVIDEVNIYQATKQGMMSAIDQLSVNPDALLLDAMN 175

Query: 125 IPEDLPCQAFAVIKGDSIS 143
           +P  LP Q+  +IKGD  S
Sbjct: 176 LPLSLPQQS--LIKGDQKS 192


>gi|269955973|ref|YP_003325762.1| Ribonuclease H [Xylanimonas cellulosilytica DSM 15894]
 gi|269304654|gb|ACZ30204.1| Ribonuclease H [Xylanimonas cellulosilytica DSM 15894]
          Length = 272

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 90/222 (40%), Gaps = 35/222 (15%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVV-------VAAIILDPNNIPFGINDSKK 62
           P    E  +       VAG+DEVGRGALAGPV         A         P G+ DSK 
Sbjct: 18  PTLRTERALISSGARLVAGMDEVGRGALAGPVSVGVVVVDAA-----TRTAPKGVADSKL 72

Query: 63  ISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP---RSA 118
           ++   RE L  ++       ++  A    ID H I  A   A   A+  ++ +       
Sbjct: 73  LTPAAREALVPQLQRWPVAWAVGHAGPAEIDAHGIIAALRIAGRRALSQVRRVCGDVDLV 132

Query: 119 LIDGRSIPEDLPC-------------------QAFAVIKGDSISLSIAAASIIAKVTRDR 159
           L+DG       P                        ++K D    S+AAAS++AKV RD 
Sbjct: 133 LLDGSHDWLTRPQADLFEAVELDVAGAPETDPTVRTLVKADLQCASVAAASVLAKVERDL 192

Query: 160 LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           L+    ++YP Y +D + GY    H   ++  G +  HR ++
Sbjct: 193 LLTRLARQYPAYAWDQNKGYSAPAHLDALRLHGTTPQHRRSW 234


>gi|289524535|ref|ZP_06441389.1| ribonuclease HII [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502226|gb|EFD23390.1| ribonuclease HII [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 129

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 51/118 (43%), Positives = 70/118 (59%)

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
           +A+  +ID+ NI +ATL A+  A  +L + P   ++DG     DL     A+ K D   L
Sbjct: 3   AANPWFIDRANILQATLWAMEKAASSLPLSPDIVIVDGNQKIPDLSFPQKALPKADKNVL 62

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            + AASI+AKV RDR+M    K YPDYGF  H GYPT +H++ +   G S IHR TF+
Sbjct: 63  VVGAASIVAKVIRDRVMCAYDKLYPDYGFAVHKGYPTKEHRRALALMGASPIHRKTFK 120


>gi|289178076|gb|ADC85322.1| Ribonuclease HII [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 290

 Score =  147 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 74/256 (28%), Positives = 113/256 (44%), Gaps = 67/256 (26%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKK 62
           P F LE  +       + G DEVGRG+LAGPV+V A      N+       P  + DSK 
Sbjct: 35  PSFALERQIAADGFDVIVGFDEVGRGSLAGPVMVGAAAFLARNLDEAQTAMPQYLADSKT 94

Query: 63  ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---------- 111
           ++  +RE LYE + +     +I SAS+  ID   I  A   A   A++ +          
Sbjct: 95  LTEHRRESLYEPLQAWVDGFAIGSASNAEIDAWGISHALGIAALRALDGVERALGMGSPG 154

Query: 112 --------------------QVIPRS--------ALIDGRSIPEDL-------------- 129
                               +  P+         A++DG   P D               
Sbjct: 155 DSEIRGFDERCKYSGTWAYTKHSPQQHADGLHVGAILDG---PNDYISKALGTFEAPAVP 211

Query: 130 -PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA---HKKYPDYGFDSHVGYPTAKHQ 185
            P Q   ++K D+   S+AAA+++AKVTRDRLM      H +Y  YG++ + GY +  H+
Sbjct: 212 MPAQVRTLVKADAQCASVAAAAVLAKVTRDRLMEQLARDHAEYARYGWERNKGYGSKAHR 271

Query: 186 QVIKEKGPSCIHRLTF 201
           + I + GPS +HR+++
Sbjct: 272 EAIAQCGPSDLHRVSW 287


>gi|70606743|ref|YP_255613.1| ribonuclease HII [Sulfolobus acidocaldarius DSM 639]
 gi|109896186|sp|Q4JA60|RNH2_SULAC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|68567391|gb|AAY80320.1| ribonuclease HII [Sulfolobus acidocaldarius DSM 639]
          Length = 212

 Score =  147 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 24/205 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA 79
             + GIDE GRG+L GP+VVA + +D N + F    G+ DSKK++ KKRE L+  I   +
Sbjct: 1   MILVGIDEAGRGSLIGPMVVAGVAIDSNFLKFLSEIGVKDSKKLTRKKREYLFGVILEYS 60

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQV-IPRSALIDGRSIPEDLPCQAFAV- 136
             IS+  A  + ID  N+++ T  A+   + ++ V  P    +D       +  +   + 
Sbjct: 61  YAISLVKAYPEEIDSENLNEITYRAMIQIIHSMSVYNPSIVTVDKVGNASAVEREIININ 120

Query: 137 ------IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----TAKHQQ 186
                    D   + ++AASIIAKV RD ++    K Y D+G     GYP    T +  +
Sbjct: 121 SSPRVENNADVKYVEVSAASIIAKVVRDNIINELKKTYGDFG----SGYPGDKKTVEWIK 176

Query: 187 VIKEKGPS---CIHRLTFRPLRNLS 208
            +  + P+    I R +++ L++++
Sbjct: 177 DLYSRQPTYALPIIRRSWKILQDIA 201


>gi|229821017|ref|YP_002882543.1| Ribonuclease H [Beutenbergia cavernae DSM 12333]
 gi|229566930|gb|ACQ80781.1| Ribonuclease H [Beutenbergia cavernae DSM 12333]
          Length = 273

 Score =  147 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 95/230 (41%), Gaps = 49/230 (21%)

Query: 10  PHFELEAMVREK-NMWPVAGIDEVGRGALA--------------GPVVVAAIILDPNNIP 54
           P    E  + E      VAG+DEVGRG LA              G              P
Sbjct: 18  PSRAFERELAESVPGGLVAGMDEVGRGCLAGPVSVGVVVVGPATG------------RTP 65

Query: 55  FGINDSKKISHKKREELYEKITSSAIISISSASHQ-YIDKHNIHKATLDAIYHAVENL-- 111
            G+ DSK ++   RE L   +   A  S  + +    ID+  I  A   A + A+ +L  
Sbjct: 66  AGLRDSKLLTPAARERLVPPVRRWAFASAVAHASAAEIDEIGIIAALRLAGHRALGSLAA 125

Query: 112 -QVIPRSALIDGRSI------------------PEDLPCQAFAVIKGDSISLSIAAASII 152
             V+P + ++DG                     P          +K D     +AAAS++
Sbjct: 126 DGVVPGALILDGSHDWLTPPQPDLFEALEPPVAPTAFVPPVRMRVKADLTCSVVAAASVL 185

Query: 153 AKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           AK  RD LMR+ H  +PD+ + S+ GY   +H   ++E GP+ +HR ++R
Sbjct: 186 AKCERDGLMRVLHDDHPDFDWASNKGYAAPEHLAALRELGPTVLHRRSWR 235


>gi|205355751|ref|ZP_03222521.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346528|gb|EDZ33161.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 159

 Score =  147 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 7/165 (4%)

Query: 41  VVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKAT 100
           +++AA  L  N    G+ DSKK+S KKREELYE I  ++   I + S + ID   +    
Sbjct: 1   MMMAACKL--NKQLDGLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQIDALGLSTCL 58

Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ-AFAVIKGDSISLSIAAASIIAKVTRDR 159
              +    ++ +      L DG +   +L        IK D+  L ++AASI+AKV++DR
Sbjct: 59  KKGLKLIKKHFKTENNF-LYDGNT---NLGINGIKTQIKADTSILQVSAASILAKVSKDR 114

Query: 160 LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204
           +M    K +P Y F+ +  Y T  H++ I + G   +HR +F+ L
Sbjct: 115 VMNFLAKDFPCYEFEKNKAYGTKAHKEFIAKFGICKLHRKSFKLL 159


>gi|134045249|ref|YP_001096735.1| ribonuclease HII [Methanococcus maripaludis C5]
 gi|189043624|sp|A4FWE5|RNH2_METM5 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|132662874|gb|ABO34520.1| RNase HII [Methanococcus maripaludis C5]
          Length = 239

 Score =  147 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 62/216 (28%), Positives = 97/216 (44%), Gaps = 32/216 (14%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI 75
           E N   + G+DE GRG + GP+V+A++ ++  ++P     G+ DSK++S KKREELY KI
Sbjct: 14  ESNGKIIVGLDEAGRGPVIGPMVIASVKINEKDLPRLDDLGLRDSKQLSKKKREELYTKI 73

Query: 76  TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL------QVIPRSALIDGRSIPE-- 127
           +    +     + + ID+             A   L      +    S  ID  S  E  
Sbjct: 74  SEICDVKKVVINPEKIDEQMEIINLNKIELGAFSKLANHFIKENENISIYIDACSSNEQS 133

Query: 128 ----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                     +   +  A  K D     ++AASIIAKVTRD ++    K + + G     
Sbjct: 134 FSNQFKAKLINKNVEIIAEHKADENYKIVSAASIIAKVTRDNVIEEYKKTFGEIG----S 189

Query: 178 GYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207
           GYP+  K ++ +K       G   I R ++   +NL
Sbjct: 190 GYPSDPKTKKFLKNYVHENKGLPKIARKSWATSKNL 225


>gi|323359714|ref|YP_004226110.1| ribonuclease HII [Microbacterium testaceum StLB037]
 gi|323276085|dbj|BAJ76230.1| ribonuclease HII [Microbacterium testaceum StLB037]
          Length = 217

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 69/209 (33%), Positives = 108/209 (51%), Gaps = 19/209 (9%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISH 65
           P   LE  + +++   +A  DEVGRGALAGPV V A ++DP+     +P G+ DSK +  
Sbjct: 4   PTLTLERRLLKEHALVIA-CDEVGRGALAGPVAVGAAVIDPSRSRKRVPTGLRDSKLVPE 62

Query: 66  KKREELYEKITSSAII---SISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSAL 119
            +R E+  +  ++A +   ++  AS + ID+  I +A   A   A+ +L    V+P  AL
Sbjct: 63  ARRPEVAAR--AAAFVQHSAVGWASSEEIDEIGIIRALGLAAVRAIADLRAHGVVPEDAL 120

Query: 120 I--DGRSIP----EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173
           +  DG         +   +   ++K D    S AAAS+IAKV RD +M   H   P YG+
Sbjct: 121 VILDGNHDYITPAGESGLRVQPIVKADRDCASAAAASVIAKVARDTVMTYLHDDLPAYGW 180

Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             + GY +  H++ I   G S  HR ++ 
Sbjct: 181 ARNKGYASLDHREAISAHGMSVHHRHSWA 209


>gi|315604543|ref|ZP_07879606.1| ribonuclease HII [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313555|gb|EFU61609.1| ribonuclease HII [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 231

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 72/216 (33%), Positives = 97/216 (44%), Gaps = 29/216 (13%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKR 68
             ELE  + ++    VAG+DEVGRGALAGPV V   ++  +    P G+ DSK +S ++R
Sbjct: 5   SRELEYSLAQR-WGVVAGMDEVGRGALAGPVAVGVALVGADAPAVPGGLTDSKALSPRRR 63

Query: 69  EELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRS 124
           E L E I S  + S ++ AS   ID+  I  A   A   A+  +      P   L+DG  
Sbjct: 64  EALVEPIHSWVLASCVAYASAAEIDRWGIVCALRLAGRRALAGVVAKGHAPGGVLLDGSH 123

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKV------------------TRDRLMRIAHK 166
               +P    A    D       A  +  +V                   RDRLMR A  
Sbjct: 124 DWLSIPDDLCAADGPD--YPDCGALPVHTQVKADASCAVVAAASVLAKVARDRLMREAED 181

Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
             P YG+ S+ GY +A H Q I   G S  HR T+R
Sbjct: 182 --PGYGWASNKGYGSAAHAQAIARLGVSDFHRRTWR 215


>gi|289704584|ref|ZP_06501017.1| ribonuclease HII [Micrococcus luteus SK58]
 gi|289558704|gb|EFD51962.1| ribonuclease HII [Micrococcus luteus SK58]
          Length = 250

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 64/198 (32%), Positives = 95/198 (47%), Gaps = 21/198 (10%)

Query: 25  PVAGIDEVGRGALAGPVVV--AAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81
            VAG+DEVGRGALAGPVVV   A+ L        + DSK ++ ++R  L  +I   A  +
Sbjct: 36  LVAGMDEVGRGALAGPVVVGVCAVWLPAAGQIPPVRDSKALTDRRRRVLIPQIEDWAAGV 95

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENL----QVIPRSALIDGRSI------------ 125
           ++  A    ID   I  A   A   A   L       P + ++DGR              
Sbjct: 96  ALGEAGPAEIDALGISAALGLAGRRAWAALCAAVGQEPVALVLDGRDDWLSRSDPDAGPA 155

Query: 126 --PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
             P  LP +   +++ +    ++AAASI AKV RD +M      +P YG+  + GY +A 
Sbjct: 156 PAPRPLPPEPTMLVRAEDRCATVAAASIAAKVARDDVMIALDAAHPGYGWAGNKGYGSAA 215

Query: 184 HQQVIKEKGPSCIHRLTF 201
           H+  + E+G S  HR ++
Sbjct: 216 HRAALAERGASEQHRRSW 233


>gi|183601863|ref|ZP_02963232.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis HN019]
 gi|219682777|ref|YP_002469160.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190353|ref|YP_002967747.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241195759|ref|YP_002969314.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218748|gb|EDT89390.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620427|gb|ACL28584.1| ribonuclease [Bifidobacterium animalis subsp. lactis AD011]
 gi|240248745|gb|ACS45685.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250313|gb|ACS47252.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295793340|gb|ADG32875.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis V9]
          Length = 258

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/256 (28%), Positives = 113/256 (44%), Gaps = 67/256 (26%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKK 62
           P F LE  +       + G DEVGRG+LAGPV+V A      N+       P  + DSK 
Sbjct: 3   PSFALERQIAADGFDVIVGFDEVGRGSLAGPVMVGAAAFLARNLDEAQTAMPQYLADSKT 62

Query: 63  ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---------- 111
           ++  +RE LYE + +     +I SAS+  ID   I  A   A   A++ +          
Sbjct: 63  LTEHRRESLYEPLQAWVDGFAIGSASNAEIDAWGISHALGIAALRALDGVERALGMGSPG 122

Query: 112 --------------------QVIPRS--------ALIDGRSIPEDL-------------- 129
                               +  P+         A++DG   P D               
Sbjct: 123 DSEIRGFDERCKYSGTWAYTKHSPQQHADGLHVGAILDG---PNDYISKALGTFEAPAVP 179

Query: 130 -PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA---HKKYPDYGFDSHVGYPTAKHQ 185
            P Q   ++K D+   S+AAA+++AKVTRDRLM      H +Y  YG++ + GY +  H+
Sbjct: 180 MPAQVRTLVKADAQCASVAAAAVLAKVTRDRLMEQLARDHAEYARYGWERNKGYGSKAHR 239

Query: 186 QVIKEKGPSCIHRLTF 201
           + I + GPS +HR+++
Sbjct: 240 EAIAQCGPSDLHRVSW 255


>gi|88602504|ref|YP_502682.1| ribonuclease HII [Methanospirillum hungatei JF-1]
 gi|115305550|sp|Q2FP80|RNH2_METHJ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|88187966|gb|ABD40963.1| RNase HII [Methanospirillum hungatei JF-1]
          Length = 212

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 25/203 (12%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKREELYEKITSSAIISI 83
           + G+DE G+G++ GP+VVAA+      + I  G+ DSKK+S K RE++   I +    SI
Sbjct: 2   ICGVDEAGKGSVLGPMVVAAVGCTDMDDLIALGVADSKKLSSKSREKISADIKAQFPFSI 61

Query: 84  SSASHQYIDKHN--IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL-----------P 130
              +   ID+    +    + A  HA   + +    A +D   + E+             
Sbjct: 62  VIRTAHDIDELRRTMTMNEIVARSHAEALIPLNCTCAYVDACDVSEERYEETVSSFSPPD 121

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIK 189
           C   A  K DS+   ++AASIIAKV RDR++    K+Y D G     GYP+       + 
Sbjct: 122 CTIVARHKADSLFPPVSAASIIAKVERDRIIEELSKEYGDIG----SGYPSDPVTITYLT 177

Query: 190 EKG-----PSCIHRLTFRPLRNL 207
           +       P  I R ++  ++NL
Sbjct: 178 KYIRHHNQPPVIARSSWETVKNL 200


>gi|14591420|ref|NP_143500.1| ribonuclease HII [Pyrococcus horikoshii OT3]
 gi|7227917|sp|O59351|RNH2_PYRHO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|50513813|pdb|1UAX|A Chain A, Crystal Structure Of The Ribonuclease H2 From Pyrococcus
           Horikoshii Ot3
 gi|50513814|pdb|1UAX|B Chain B, Crystal Structure Of The Ribonuclease H2 From Pyrococcus
           Horikoshii Ot3
 gi|3258079|dbj|BAA30762.1| 220aa long hypothetical ribonuclease H II [Pyrococcus horikoshii
           OT3]
          Length = 220

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 99/207 (47%), Gaps = 28/207 (13%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS-AI 80
           VAG+DE GRG + GP+V+   ++D  NI      G+ DSK+++  +RE+L+ K+      
Sbjct: 3   VAGVDEAGRGPVIGPLVIGVAVIDEKNIERLRDIGVKDSKQLTPGQREKLFSKLIDILDD 62

Query: 81  ISISSASHQYIDKHNIHKATLDAIYH--AVENLQVIPRSALIDGRSIPED---------- 128
             +   + + ID+ +     L+A     A+ +L++ P+   +D   +             
Sbjct: 63  YYVLLVTPKEIDERHHSMNELEAEKFVVALNSLRIKPQKIYVDSADVDPKRFASLIKAGL 122

Query: 129 -LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQ 186
                  A  K D+    ++AASIIAKVTRDR +    +KY ++G     GYP+  + ++
Sbjct: 123 KYEATVIAEHKADAKYEIVSAASIIAKVTRDREIEKLKQKYGEFG----SGYPSDPRTKE 178

Query: 187 VI----KEKG-PSCIHRLTFRPLRNLS 208
            +    K+ G    I R T+   R + 
Sbjct: 179 WLEEYYKQYGDFPPIVRRTWETARKIE 205


>gi|293189838|ref|ZP_06608552.1| ribonuclease HII [Actinomyces odontolyticus F0309]
 gi|292821253|gb|EFF80198.1| ribonuclease HII [Actinomyces odontolyticus F0309]
          Length = 223

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/215 (33%), Positives = 103/215 (47%), Gaps = 26/215 (12%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVA-AII-LDPNNIPFGINDSKKISHKKR 68
             +LE  +  +    VAG+DEVGRGALAGPV V  A I +D   +P G+ DSK ++ ++R
Sbjct: 5   SRDLEVSLARR-WGIVAGMDEVGRGALAGPVAVGVAFIGIDAAPVPEGLTDSKALTTRRR 63

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHA---VENLQVIPRSALIDGRS 124
           E L + +    +  ++  AS Q ID   I  A   A + A   V +  ++P   L+DG  
Sbjct: 64  EALVDPVREWTLACAVGYASPQEIDDWGIIAALRLAGWRALAEVASHGLVPGGVLLDGSH 123

Query: 125 IPEDLPCQAFAVIKGDSISLSI-----------------AAASIIAKVTRDRLMRIAHKK 167
                P   F  I G      +                 AAAS++AKV RD LM      
Sbjct: 124 DWLSAPDDLFGAIDGPGDPFGVDLPVQMQVKADASCAVVAAASVLAKVERDHLMAELED- 182

Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            P YG+ S+ GY +A H + I E G S  HR +++
Sbjct: 183 -PGYGWASNKGYGSAAHTRAIVELGVSDQHRRSWK 216


>gi|150402543|ref|YP_001329837.1| ribonuclease HII [Methanococcus maripaludis C7]
 gi|189043625|sp|A6VGW0|RNH2_METM7 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|150033573|gb|ABR65686.1| ribonuclease HII [Methanococcus maripaludis C7]
          Length = 239

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 61/216 (28%), Positives = 97/216 (44%), Gaps = 32/216 (14%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI 75
           E N   + G+DE GRG + GP+V+A++ ++ N++P     G+ DSK+++ KKREELY KI
Sbjct: 14  EFNGKIIVGLDEAGRGPVIGPMVIASVKINENDLPKLHDLGLKDSKQLTKKKREELYIKI 73

Query: 76  TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL------QVIPRSALIDGRSIPE-- 127
           +    +       + ID+             A   L      +    S  ID  S  E  
Sbjct: 74  SEICDVKKIVIDPEKIDEQMEIINLNKIELGAFSKLANHFIKENENISIYIDACSSNEQS 133

Query: 128 ----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                     +   +  A  K D     ++AASIIAKVTRD ++    + + + G     
Sbjct: 134 FSNQFKAKLINKNVEIIAEHKADENYKIVSAASIIAKVTRDNVIEEYKEIFGEIG----S 189

Query: 178 GYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207
           GYP+  K ++ +K       G   I R ++   +NL
Sbjct: 190 GYPSDPKTKKFLKNYVHENKGLPKIARKSWATSKNL 225


>gi|284161145|ref|YP_003399768.1| ribonuclease HII [Archaeoglobus profundus DSM 5631]
 gi|284011142|gb|ADB57095.1| ribonuclease HII [Archaeoglobus profundus DSM 5631]
          Length = 211

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 96/204 (47%), Gaps = 25/204 (12%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII 81
           +AGIDE G+G + GP+V+  ++ D   + +    G+ DSKK+  +KREELY  I S   +
Sbjct: 2   IAGIDEAGKGPVIGPLVICGVLCDEETVEYLKSVGVKDSKKLDRRKREELYNIIKSLCKV 61

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIP---------EDLP 130
            +   S + +++   + +  + +  A   +   ++P+   ID   I          E   
Sbjct: 62  KVLKISVEDLNRLMEYMSINEILKRAYVEIIRSLMPKVVYIDCPDINVERFKHEIEERTG 121

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH-----Q 185
            + FA  K D I   ++ ASI+AKV RD  +    K Y D+G     GYP+        +
Sbjct: 122 VEVFASHKADEIYPIVSIASIVAKVERDFEIDKLKKIYGDFG----SGYPSDLRTIEFLR 177

Query: 186 QVIKEK-GPSCIHRLTFRPLRNLS 208
             ++E      I R  ++ L+ L+
Sbjct: 178 SYLREHKSFPPIVRKRWKTLKRLT 201


>gi|14520734|ref|NP_126209.1| ribonuclease HII [Pyrococcus abyssi GE5]
 gi|11387114|sp|Q9V1A9|RNH2_PYRAB RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|5457950|emb|CAB49440.1| rnhB ribonuclease HII [Pyrococcus abyssi GE5]
          Length = 224

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 102/207 (49%), Gaps = 28/207 (13%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS-AI 80
           VAG DE GRG + GP+V+ A +++ + I      G+ DSK+++  +RE+L+++I      
Sbjct: 3   VAGADEAGRGPVIGPLVIVAAVVEEDKIRSLTKLGVKDSKQLTPAQREKLFDEIVKVLDD 62

Query: 81  ISISSASHQYID--KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED---------- 128
            S+   S Q ID  K ++++  ++    A+ +L+V P    ID   +  +          
Sbjct: 63  YSVVIVSPQDIDGRKGSMNELEVENFVKALNSLKVKPEVIYIDSADVKAERFAENIRSRL 122

Query: 129 -LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQ 186
               +  A  K D+    ++AASI+AKV RDR +     +Y D+G     GYP+  + ++
Sbjct: 123 AYEAKVVAEHKADAKYEIVSAASILAKVIRDREIEKLKAEYGDFG----SGYPSDPRTKK 178

Query: 187 VIKE----KG-PSCIHRLTFRPLRNLS 208
            ++E     G    I R T+   + + 
Sbjct: 179 WLEEWYSKHGNFPPIVRRTWDTAKKIE 205


>gi|146303444|ref|YP_001190760.1| ribonuclease HII [Metallosphaera sedula DSM 5348]
 gi|145701694|gb|ABP94836.1| RNase HII [Metallosphaera sedula DSM 5348]
          Length = 208

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 63/197 (31%), Positives = 102/197 (51%), Gaps = 23/197 (11%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI-I 81
            GIDE GRG L GP+VV  + L+  +I      G+ DSKK++ KKREEL++ I S +  +
Sbjct: 3   IGIDEAGRGCLIGPMVVVGVALNERSIVALKQSGVKDSKKLTRKKREELFDLILSESEGV 62

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVI-PRSALIDGR-------SIPEDLPCQA 133
           +++ A  + ID +N++  T   +   ++ L  + P    +D            EDL  + 
Sbjct: 63  AVAKALPEEIDNNNLNSLTYTKVIEIIDALSWLNPEVVTVDKVGKEIEVIRAIEDLGFKP 122

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA-KHQQVIKEK- 191
             V K D + +  ++ASI+AKV RDRL+    K++ D+G     GYP+  K  Q + +  
Sbjct: 123 NVVHKADELFVEASSASIVAKVIRDRLIESLKKEFGDFG----SGYPSDRKTVQWVLDLV 178

Query: 192 --GPSC--IHRLTFRPL 204
             G     I R +++ L
Sbjct: 179 SRGEEPPNIIRRSWKLL 195


>gi|154509166|ref|ZP_02044808.1| hypothetical protein ACTODO_01687 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798800|gb|EDN81220.1| hypothetical protein ACTODO_01687 [Actinomyces odontolyticus ATCC
           17982]
          Length = 223

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 71/215 (33%), Positives = 101/215 (46%), Gaps = 26/215 (12%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVA-AII-LDPNNIPFGINDSKKISHKKR 68
             +LE  +  +    VAG+DEVGRGALAGPV V  A I +D   +P G+ DSK ++ ++R
Sbjct: 5   SRDLEVSLARR-WGIVAGMDEVGRGALAGPVAVGVAFIGIDAAPVPEGLTDSKALTARRR 63

Query: 69  EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHA---VENLQVIPRSALIDGRS 124
           E L + +    +  ++  AS Q ID   I  A   A   A   V +  ++P   L+DG  
Sbjct: 64  EALVDPVREWTLACAVGYASPQEIDDWGIIAALRLAGRRALAEVASHGLVPGGVLLDGSH 123

Query: 125 IPEDLPCQAFAVIKGDSISLSI-----------------AAASIIAKVTRDRLMRIAHKK 167
                P   F  I G      +                 AAAS++AKV RD LM      
Sbjct: 124 DWLSAPDDLFGAIDGPGDPFGVDLPVQMQVKADASCAVVAAASVLAKVERDHLMAELED- 182

Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            P YG+ S+ GY +  H + I E G S  HR +++
Sbjct: 183 -PGYGWASNKGYGSTAHTRAIVELGVSDQHRRSWK 216


>gi|237752170|ref|ZP_04582650.1| rnase [Helicobacter winghamensis ATCC BAA-430]
 gi|229376412|gb|EEO26503.1| rnase [Helicobacter winghamensis ATCC BAA-430]
          Length = 161

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 5/158 (3%)

Query: 50  PNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVE 109
           P ++   + DSK +S KKR+ L   +   A   I       ID   +     +A+   + 
Sbjct: 7   PESLKNSLRDSKTLSQKKRDALANILKDYATFKIIKKEANEIDTKGLSACIKEALQEILS 66

Query: 110 NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
              +     + DG      +P     + KGDS   +I+AASI+AK  +D  M   H  YP
Sbjct: 67  --TIYAPFYIFDGN-CNFKIPH-LKTLTKGDSKLHTISAASILAKSAKDAEMLEFHALYP 122

Query: 170 DYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
            Y F  + GY T  H Q I   G S IHR ++R +++L
Sbjct: 123 HYDFARNKGYGTKAHIQAIATHGLSPIHRKSYR-IKSL 159


>gi|227826588|ref|YP_002828367.1| ribonuclease HII [Sulfolobus islandicus M.14.25]
 gi|227829230|ref|YP_002831009.1| ribonuclease HII [Sulfolobus islandicus L.S.2.15]
 gi|229577999|ref|YP_002836397.1| ribonuclease HII [Sulfolobus islandicus Y.G.57.14]
 gi|229583752|ref|YP_002842253.1| ribonuclease HII [Sulfolobus islandicus M.16.27]
 gi|238618674|ref|YP_002913499.1| ribonuclease HII [Sulfolobus islandicus M.16.4]
 gi|284996585|ref|YP_003418352.1| hypothetical protein LD85_0182 [Sulfolobus islandicus L.D.8.5]
 gi|227455677|gb|ACP34364.1| ribonuclease HII [Sulfolobus islandicus L.S.2.15]
 gi|227458383|gb|ACP37069.1| ribonuclease HII [Sulfolobus islandicus M.14.25]
 gi|228008713|gb|ACP44475.1| ribonuclease HII [Sulfolobus islandicus Y.G.57.14]
 gi|228018801|gb|ACP54208.1| ribonuclease HII [Sulfolobus islandicus M.16.27]
 gi|238379743|gb|ACR40831.1| ribonuclease HII [Sulfolobus islandicus M.16.4]
 gi|284444480|gb|ADB85982.1| hypothetical protein LD85_0182 [Sulfolobus islandicus L.D.8.5]
 gi|323473667|gb|ADX84273.1| ribonuclease HII [Sulfolobus islandicus REY15A]
 gi|323476318|gb|ADX81556.1| ribonuclease HII [Sulfolobus islandicus HVE10/4]
          Length = 212

 Score =  144 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 23/199 (11%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA-II 81
            GIDE GRGAL GP++VA + +  + + F    G+ DSK+++ ++RE+L++ I S+    
Sbjct: 3   IGIDEAGRGALIGPMIVAGVAISDSKLKFLKGIGVKDSKQLTRERREKLFDIIASTVDAF 62

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQV-IPRSALIDGRS-------IPEDLPCQA 133
           ++       ID +N++  T DA+   + +L V  P    +D          +   L  ++
Sbjct: 63  TVVKVFPYEIDNYNLNDLTYDAVSKIILSLSVFNPEIVTVDKVGEEKPVIELIRKLGYKS 122

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK- 191
             V K D + +  +AASIIAKV RD  +    K Y D+G     GYP   +  + +K   
Sbjct: 123 NVVHKADVLFVEASAASIIAKVIRDNYIDELKKVYGDFG----SGYPADPRTIKWLKSFY 178

Query: 192 ----GPSCIHRLTFRPLRN 206
                P  I R +++ LR+
Sbjct: 179 EKNPNPPPIVRRSWKILRS 197


>gi|88191784|pdb|1X1P|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-197)-A(28-42)
          Length = 212

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 95/198 (47%), Gaps = 28/198 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS-AI 80
           +AGIDE GRG + GP+V+AA+++D N++P      + DSKK++ K+RE+L+ +I      
Sbjct: 3   IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62

Query: 81  ISISSASHQYI--DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE----------- 127
             I       I   +  +++  ++    A+ +L+V P     D   + E           
Sbjct: 63  YVILELPPDVIGSREGTLNEFEVENFAKALNSLKVKPDVIYADAADVDEERFARELGERL 122

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           +   +  A  K D I   ++AASI+AKVTRDR +    ++Y + G     GYP+    + 
Sbjct: 123 NFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGYPSDPRTRA 178

Query: 188 I-----KEKG-PSCIHRL 199
                 +E G    I R 
Sbjct: 179 FLENYYREHGEFPPIVRK 196


>gi|159905682|ref|YP_001549344.1| ribonuclease HII [Methanococcus maripaludis C6]
 gi|238686969|sp|A9A9T9|RNH2_METM6 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|159887175|gb|ABX02112.1| ribonuclease HII [Methanococcus maripaludis C6]
          Length = 239

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/218 (27%), Positives = 98/218 (44%), Gaps = 32/218 (14%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYE 73
           + E +   + G+DE GRG + GP+V+A++ ++  ++      G+ DSK++S KKREELY 
Sbjct: 12  LDEFSGKIIVGLDEAGRGPVIGPMVIASVKINEKDLYKLQDLGLKDSKQLSKKKREELYV 71

Query: 74  KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL------QVIPRSALIDGRSIPE 127
           KI+    +     + + ID+             A   L      +    S  ID  S  E
Sbjct: 72  KISEICNVKKIVIAPEKIDEQMEITNLNKIELSAFSKLANHFIKENENISIYIDACSSNE 131

Query: 128 ------------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
                       +   +  A  K D     ++AASIIAKVTRD ++    K + + G   
Sbjct: 132 QSFSNQFKAKLINKNVEIIAEHKADENYKIVSAASIIAKVTRDNVIEEYKKTFGEIG--- 188

Query: 176 HVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207
             GYP+  K ++ +K+      G   I R ++   +NL
Sbjct: 189 -SGYPSDPKTKKFLKKYVHENKGLPKIARKSWATSKNL 225


>gi|56713262|gb|AAW23358.1| ribonuclease HIIA [Leishmania major]
          Length = 296

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 105/260 (40%), Gaps = 77/260 (29%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSA- 79
           +  V G+DE GRG +AGPV VAA +   +  P  + + DSKK+    R E  E + +   
Sbjct: 15  IRYVIGVDEAGRGCMAGPVGVAATLYRISATPVRYAVMDSKKMKESDRAETLEAMCAELS 74

Query: 80  -----------------------------IISISSASHQYIDKHNIHKATLDAI------ 104
                                         ++ +      I++ NI  ATL+ +      
Sbjct: 75  DAGVEGFVGTTVRDGACCLVRYQRRKPLQAVAAALVDVSVINERNILNATLEGMSAVCEA 134

Query: 105 ----YHAVENLQ---VIPRSALIDGRSIPEDL---------------------------- 129
               Y+AV  L     +  + LIDG  +P                               
Sbjct: 135 VVRSYNAVSGLGTLTPLTCAILIDGNRVPWTFLSGEERQRVCVQAVRKVEARKRIGVEYP 194

Query: 130 ---PCQAFAVIKGDSISLSIAAASIIAKVTRDRL-MRIAHKKYPDYGFDSHVGYPTAKHQ 185
                    V+KGD+  LSIAAASI+AKV RD   + + H  +P YGFD H GY TA H+
Sbjct: 195 ALDGFSCTTVVKGDATLLSIAAASIVAKVARDAYAVSVMHPAFPQYGFDHHKGYCTAAHK 254

Query: 186 QVIKEKGPSCIHRLTFRPLR 205
             +   GPS  HRL + P++
Sbjct: 255 AELARWGPSRFHRLDYAPVK 274


>gi|229583211|ref|YP_002841610.1| ribonuclease HII [Sulfolobus islandicus Y.N.15.51]
 gi|228013927|gb|ACP49688.1| ribonuclease HII [Sulfolobus islandicus Y.N.15.51]
          Length = 212

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 99/199 (49%), Gaps = 23/199 (11%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKI-TSSAII 81
            GIDE GRGAL GP++VA + +  + + F    G+ DSK+++ ++RE+L++ I  +    
Sbjct: 3   IGIDEAGRGALIGPMIVAGVAISDSKLKFLKGIGVKDSKQLTRERREKLFDIIAITVDAF 62

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQV-IPRSALIDGRS-------IPEDLPCQA 133
           ++       ID +N++  T DA+   + +L V  P    +D          +   L  ++
Sbjct: 63  TVVKVFPYEIDNYNLNDLTYDAVSKIILSLSVFNPEIVTVDKVGEEKPVIELIRKLGYKS 122

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK- 191
             V K D + +  +AASIIAKV RD  +    K Y D+G     GYP   +  + +K   
Sbjct: 123 NVVHKADVLFVEASAASIIAKVIRDNYIDELKKVYGDFG----SGYPADPRTIKWLKSFY 178

Query: 192 ----GPSCIHRLTFRPLRN 206
                P  I R +++ LR+
Sbjct: 179 EKNPNPPPIVRRSWKILRS 197


>gi|291533379|emb|CBL06492.1| Ribonuclease HII [Megamonas hypermegale ART12/1]
          Length = 136

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 52/133 (39%), Positives = 83/133 (62%), Gaps = 2/133 (1%)

Query: 76  TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
             +AI ++ +    + ID+ NI++A ++ +Y A+  L   P + LID   + E L     
Sbjct: 1   MENAIAVNRAIIDEKTIDRVNIYQAAMNGMYEAIYGLNPKPDAVLIDAMPL-ESLDIYHQ 59

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194
           ++IKGD+ S SIAAASI+AKV RDR+M    K YP YGF  + GY T++H + +++ GP 
Sbjct: 60  SIIKGDAKSASIAAASIVAKVERDRMMNEFDKIYPQYGFAKNKGYGTSEHLEALRKYGPC 119

Query: 195 CIHRLTFRPLRNL 207
            IHR +F P++++
Sbjct: 120 EIHRKSFEPIKSM 132


>gi|327401115|ref|YP_004341954.1| ribonuclease HII [Archaeoglobus veneficus SNP6]
 gi|327316623|gb|AEA47239.1| ribonuclease HII [Archaeoglobus veneficus SNP6]
          Length = 212

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 28/208 (13%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS 78
           M  VAGIDE G+G + GP+VV  +      +      G+ DSK++S K+REEL  +I   
Sbjct: 1   MVRVAGIDEAGKGPVIGPMVVCGVCCSEEELVELEKIGVRDSKRLSPKRREELAREIKKL 60

Query: 79  AIISISSASHQYIDKHN----IHKATLDAIYHAVENLQVIPRSALIDGRS-IPEDL---- 129
           + + +     + +D+      I++   D     +  L   P    +D    IPE L    
Sbjct: 61  SNVYVIKLEPEKLDRLMEKKTINEILTDCYAEIINELN--PDLTFVDSPDVIPERLSEAL 118

Query: 130 ----PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH- 184
                 +  A+ + D +   ++AASI+AKV RDR +    K+    G D   GY + K  
Sbjct: 119 KKRTGKEVKAMHRADVLKPVVSAASIVAKVERDREIEKIKKEL---GVDFGSGYASDKRT 175

Query: 185 ----QQVIKEKG-PSCIHRLTFRPLRNL 207
               ++  KE G      R +++ L  +
Sbjct: 176 IEFLKEYFKEHGRFPPYVRRSWKTLDRI 203


>gi|15899137|ref|NP_343742.1| ribonuclease HII [Sulfolobus solfataricus P2]
 gi|284173748|ref|ZP_06387717.1| ribonuclease HII [Sulfolobus solfataricus 98/2]
 gi|74539626|sp|Q97W56|RNH2_SULSO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|13815686|gb|AAK42532.1| Ribonuclease HII (rnhB) [Sulfolobus solfataricus P2]
 gi|261600886|gb|ACX90489.1| ribonuclease HII [Sulfolobus solfataricus 98/2]
          Length = 212

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 99/199 (49%), Gaps = 23/199 (11%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA-II 81
            GIDE GRGAL GP++VA +++    + F    G+ DSK+++ ++RE+L++ + ++    
Sbjct: 3   VGIDEAGRGALIGPMIVAGVVISDTKLKFLKGIGVKDSKQLTRERREKLFDIVANTVEAF 62

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQV-IPRSALIDGRS-------IPEDLPCQA 133
           ++       ID +N++  T DA+   + +L    P    +D          +   L  ++
Sbjct: 63  TVVKVFPYEIDNYNLNDLTYDAVSKIILSLSSFNPEIVTVDKVGDEKPVIELINKLGYKS 122

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK- 191
             V K D + +  +AASIIAKV RD  +    + Y D+G     GYP   +  + +K   
Sbjct: 123 NVVHKADVLFVEASAASIIAKVIRDNYIDELKQVYGDFG----SGYPADPRTIKWLKSFY 178

Query: 192 ----GPSCIHRLTFRPLRN 206
                P  I R +++ LR+
Sbjct: 179 EKNPNPPPIIRRSWKILRS 197


>gi|307353890|ref|YP_003894941.1| ribonuclease HII [Methanoplanus petrolearius DSM 11571]
 gi|307157123|gb|ADN36503.1| ribonuclease HII [Methanoplanus petrolearius DSM 11571]
          Length = 212

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 25/203 (12%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKREELYEKITSSAIISI 83
           + GIDE G+G++ GP+V+  +        +  G  DSK +S ++RE+ YE+I +    + 
Sbjct: 2   ICGIDEAGKGSVLGPMVIGGVAGKDLSEFVKKGFADSKTLSPRRREQFYEEIVAEFKTTT 61

Query: 84  SSASHQYIDKHN--IHKATLDAIYHAVENLQVIPRSALIDGRSIPE-----------DLP 130
              S   ID+    +    + A  HA     ++P +A +D   + E              
Sbjct: 62  VVLSAAMIDELRSSMTMNEIVARSHARAITDLMPDTAYVDACDVNEVRYAETISGFLKND 121

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-----AKHQ 185
               +  K D +   ++AASI+AKVTRDR++     ++ + G     GYP+     A  +
Sbjct: 122 IAIVSKHKADDLYAVVSAASIVAKVTRDRMIEDLKSQWGNIG----SGYPSDPDTIAFLK 177

Query: 186 QVIKEKG-PSCIHRLTFRPLRNL 207
           + I+E+G P  I R++++ + N+
Sbjct: 178 RYIEERGEPPSIARMSWKTISNM 200


>gi|330835291|ref|YP_004410019.1| ribonuclease HII [Metallosphaera cuprina Ar-4]
 gi|329567430|gb|AEB95535.1| ribonuclease HII [Metallosphaera cuprina Ar-4]
          Length = 208

 Score =  141 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 62/198 (31%), Positives = 100/198 (50%), Gaps = 23/198 (11%)

Query: 28  GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAI-IS 82
           GIDE GRG L GP++VA I+LD          G+ DSK+++ K+REEL+  I   +  I+
Sbjct: 4   GIDEAGRGCLIGPMIVAGIVLDEKGREELKELGVKDSKRLTRKRREELFNAIIERSKGIA 63

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVI-PRSALIDGRS-------IPEDLPCQAF 134
           ++ A    ID +N++  T   +   + +L  + P+   +D          + E L   A 
Sbjct: 64  VAKAEPLEIDSNNLNALTYRKVSEIISSLSWLNPKIVTVDKVGKETEVIELIERLGFVAN 123

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK-- 191
            V K D + +  ++ASIIAKV RD ++     KY D+G     GYP+  K  + +K+   
Sbjct: 124 VVHKADELFIEASSASIIAKVIRDNIIERLKLKYGDFG----SGYPSDPKTIRWVKDLVS 179

Query: 192 -GPSC--IHRLTFRPLRN 206
            G     I R +++ L+ 
Sbjct: 180 KGEEPPNIIRKSWKLLQK 197


>gi|14324349|dbj|BAB59277.1| ribonuclease HII [Thermoplasma volcanium GSS1]
          Length = 218

 Score =  141 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 53/200 (26%), Positives = 91/200 (45%), Gaps = 24/200 (12%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAIISISS 85
            GIDE GRG + GP+V++ +      +   G+ DSK +S K+RE L++KIT +   S   
Sbjct: 13  CGIDEAGRGPVIGPMVISIVCCKEEYLREIGVKDSKMLSRKRREYLFDKITKNCAYSYVV 72

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPR-SALIDGRSIPEDL---------PCQAFA 135
            S + ++K    ++      + +  L         ID   + E+            +   
Sbjct: 73  VSPETLNKDMASESLNKIEENYILELLSKAEGIVYIDCFDVIEERAEKYIREKSGKEVVC 132

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT---------AKHQQ 186
             K DSI  +++AASI++KV RDR +    +KY  +G     GYP+            QQ
Sbjct: 133 KHKADSIYPAVSAASIVSKVIRDREIDKIAEKYGFFG----SGYPSDPRTIDFLRKAMQQ 188

Query: 187 VIKEKGPSCIHRLTFRPLRN 206
            +  +  + IH  T++ ++ 
Sbjct: 189 GLDLRSVARIHWETYKKIKE 208


>gi|13540964|ref|NP_110652.1| ribonuclease HII [Thermoplasma volcanium GSS1]
          Length = 219

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 53/200 (26%), Positives = 91/200 (45%), Gaps = 24/200 (12%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAIISISS 85
            GIDE GRG + GP+V++ +      +   G+ DSK +S K+RE L++KIT +   S   
Sbjct: 14  CGIDEAGRGPVIGPMVISIVCCKEEYLREIGVKDSKMLSRKRREYLFDKITKNCAYSYVV 73

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPR-SALIDGRSIPEDL---------PCQAFA 135
            S + ++K    ++      + +  L         ID   + E+            +   
Sbjct: 74  VSPETLNKDMASESLNKIEENYILELLSKAEGIVYIDCFDVIEERAEKYIREKSGKEVVC 133

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT---------AKHQQ 186
             K DSI  +++AASI++KV RDR +    +KY  +G     GYP+            QQ
Sbjct: 134 KHKADSIYPAVSAASIVSKVIRDREIDKIAEKYGFFG----SGYPSDPRTIDFLRKAMQQ 189

Query: 187 VIKEKGPSCIHRLTFRPLRN 206
            +  +  + IH  T++ ++ 
Sbjct: 190 GLDLRSVARIHWETYKKIKE 209


>gi|34395818|sp|Q97CG6|RNH2_THEVO RecName: Full=Ribonuclease HII; Short=RNase HII
          Length = 212

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/200 (26%), Positives = 91/200 (45%), Gaps = 24/200 (12%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAIISISS 85
            GIDE GRG + GP+V++ +      +   G+ DSK +S K+RE L++KIT +   S   
Sbjct: 7   CGIDEAGRGPVIGPMVISIVCCKEEYLREIGVKDSKMLSRKRREYLFDKITKNCAYSYVV 66

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPR-SALIDGRSIPEDL---------PCQAFA 135
            S + ++K    ++      + +  L         ID   + E+            +   
Sbjct: 67  VSPETLNKDMASESLNKIEENYILELLSKAEGIVYIDCFDVIEERAEKYIREKSGKEVVC 126

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT---------AKHQQ 186
             K DSI  +++AASI++KV RDR +    +KY  +G     GYP+            QQ
Sbjct: 127 KHKADSIYPAVSAASIVSKVIRDREIDKIAEKYGFFG----SGYPSDPRTIDFLRKAMQQ 182

Query: 187 VIKEKGPSCIHRLTFRPLRN 206
            +  +  + IH  T++ ++ 
Sbjct: 183 GLDLRSVARIHWETYKKIKE 202


>gi|256824957|ref|YP_003148917.1| ribonuclease HII [Kytococcus sedentarius DSM 20547]
 gi|256688350|gb|ACV06152.1| ribonuclease HII [Kytococcus sedentarius DSM 20547]
          Length = 252

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 86/220 (39%), Gaps = 46/220 (20%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALA----------------GPVVVAAIILDPNNIPFGIN 58
           E  +  +    VAG+DEVGRGALA                 PV              G+ 
Sbjct: 24  ERELLRQGARRVAGMDEVGRGALAGPVSVGVVVVDAAVGTAPV--------------GVR 69

Query: 59  DSKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117
           DSK +S  +RE L  +++   +   +  A  + ID H I  A   A   A+    V    
Sbjct: 70  DSKDLSAARREGLVPQLSRWGVARGVGHAGPEEIDAHGIMAALRMAGRRALAAAGVEVDV 129

Query: 118 ALIDGRSIPEDLPCQ-------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIA 164
            L+DG       P +                  K D    S+AAAS++AKV RD +M   
Sbjct: 130 VLLDGNHDWLTDPLRSGLFGLQGVAGPAVVTRTKADRTCSSVAAASVLAKVERDGIMTDL 189

Query: 165 HKK--YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
                   YG++ + GY    H+  +   GPS  HR ++R
Sbjct: 190 AGAPGCAAYGWERNKGYAAGDHRAALGSLGPSVHHRRSWR 229


>gi|254167831|ref|ZP_04874680.1| ribonuclease HII [Aciduliprofundum boonei T469]
 gi|289596631|ref|YP_003483327.1| ribonuclease HII [Aciduliprofundum boonei T469]
 gi|197623122|gb|EDY35688.1| ribonuclease HII [Aciduliprofundum boonei T469]
 gi|289534418|gb|ADD08765.1| ribonuclease HII [Aciduliprofundum boonei T469]
          Length = 212

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 29/199 (14%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSSA-IISIS 84
            G+DE GRG + GP+VVA +  + + I    + DSKK+S K+RE L E+I   A  I + 
Sbjct: 3   CGVDEAGRGPVIGPLVVAGVCGEESKIASLRVKDSKKLSPKRRERLAEEIKKVASKIVVI 62

Query: 85  SASHQYID----KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL----------- 129
               + ID    K  +++  ++     +  L        +D   + ED            
Sbjct: 63  KIEPEEIDALREKMTLNEIEVELFARVISQLNG--DKVYVDAADVNEDRFAEEIKKKLGK 120

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ---- 185
             +  +  K DS    ++AASIIAKV RDR++    K+  ++G     GYP  +      
Sbjct: 121 DVEIISEHKADSKYPMVSAASIIAKVERDRIINELKKELGEFG----SGYPADERTKRFL 176

Query: 186 -QVIKEKGPSCIH-RLTFR 202
            + +KE      H R +++
Sbjct: 177 EKYVKEHNELPPHTRHSWK 195


>gi|45358937|ref|NP_988494.1| ribonuclease HII [Methanococcus maripaludis S2]
 gi|73917612|sp|Q6LXH7|RNH2_METMP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|45047803|emb|CAF30930.1| Ribonuclease HII [Methanococcus maripaludis S2]
          Length = 242

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/211 (27%), Positives = 89/211 (42%), Gaps = 32/211 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI 80
            + G+DE GRG + GP+V+A++ +D  N+       + DSK++S KKREELY  I     
Sbjct: 22  IIVGLDEAGRGPVLGPMVIASVKIDEKNLYKLNDLELKDSKQLSKKKREELYIIINEMCD 81

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR------SALIDGRSIPE------- 127
           +       + IDK             A   L           S  ID  S  E       
Sbjct: 82  VEKIVIDPETIDKQMEIINLNKIELSAFSKLSNHFIRENDNISIYIDACSSSEQSFSNQF 141

Query: 128 -----DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT- 181
                +   +  A  K D     ++AASIIAKVTRDR++    + + + G     GYP+ 
Sbjct: 142 KAKLINKNVEIIAEHKADENYKIVSAASIIAKVTRDRVIEEYKETFGEIG----SGYPSD 197

Query: 182 AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207
            K ++ +K           I R ++   +NL
Sbjct: 198 PKTKKFLKNYVYENRTLPKIARKSWATSKNL 228


>gi|15920736|ref|NP_376405.1| ribonuclease HII [Sulfolobus tokodaii str. 7]
 gi|74574695|sp|Q974Z3|RNH2_SULTO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|15621519|dbj|BAB65514.1| 208aa long hypothetical ribonuclease HII [Sulfolobus tokodaii str.
           7]
          Length = 208

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 23/204 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA 79
             V GIDE GRG+L GP++VA + +  + + F    G+ DSK+++  +RE+L++ I S +
Sbjct: 1   MIVVGIDEAGRGSLIGPMIVAGVAIKNDRLKFLKNIGVKDSKQLTRNRREKLFDIICSYS 60

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENL-QVIPRSALIDGRSIPEDLPCQAFA-- 135
              +I   S + ID  N+++ T  A+   + +L +  P    ID     + +  +     
Sbjct: 61  EGFTIVKVSPEEIDSENLNELTYKAMIKIIYSLVEFKPIRISIDKVGNTKVVEQEIIKLG 120

Query: 136 -----VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIK 189
                V   D   +  +AASIIAKV RD ++     KY D+G     GYP+  K    +K
Sbjct: 121 MEPNIVTNADVYFVEASAASIIAKVIRDNIIDTLKSKYGDFG----SGYPSDPKTVNWVK 176

Query: 190 E-----KGPSCIHRLTFRPLRNLS 208
                   P  I R +++ L+ ++
Sbjct: 177 NVYKEYLTPPPIIRRSWKILQEIA 200


>gi|254167925|ref|ZP_04874774.1| ribonuclease HII [Aciduliprofundum boonei T469]
 gi|197623216|gb|EDY35782.1| ribonuclease HII [Aciduliprofundum boonei T469]
          Length = 212

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 29/199 (14%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSSA-IISIS 84
            G+DE GRG + GP+VVA +  + + I    + DSKK+S K RE L E+I   A  I + 
Sbjct: 3   CGVDEAGRGPVIGPLVVAGVCGEESKIASLRVKDSKKLSPKSRERLAEEIKKVASKIVVI 62

Query: 85  SASHQYID----KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL----------- 129
               + ID    +  +++  ++     +  L        +D   + ED            
Sbjct: 63  KIEPEEIDALRERMTLNEIEVELFARVISQLNG--DKVYVDAADVNEDRFAEEIKKKLGK 120

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ---- 185
             +  +  K DS    ++AASIIAKV RDR++    ++  ++G     GYP+        
Sbjct: 121 DVEIISEHKADSKYPMVSAASIIAKVERDRIIEELKEELGEFG----SGYPSDDRTKRFL 176

Query: 186 -QVIKEKGPSCIH-RLTFR 202
            + +KE      H R +++
Sbjct: 177 EKYVKEHNELPPHTRHSWK 195


>gi|126178454|ref|YP_001046419.1| ribonuclease HII [Methanoculleus marisnigri JR1]
 gi|125861248|gb|ABN56437.1| RNase HII [Methanoculleus marisnigri JR1]
          Length = 205

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 91/200 (45%), Gaps = 25/200 (12%)

Query: 29  IDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86
           +DE G+G++ GP+VVAA+      +     I DSK +  K+RE LYE +     I+I + 
Sbjct: 1   MDEAGKGSVLGPMVVAAVGCREIEDLATLPIRDSKVLRPKQREALYEILFRDFSIAIVTI 60

Query: 87  SHQYID--KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-----------EDLPCQA 133
               ID  +  +   T  A  HA   + + P  A +D   +             D PC+ 
Sbjct: 61  DAAGIDDARSRMSMNTCVAELHAEALMSLQPEYAYVDACDVNAERYGRTVAELLDYPCEI 120

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQ----VI 188
            A    D+    + AAS++AKVTRDR +R   ++Y   G     GYP+     +     I
Sbjct: 121 VAEHHADARHKVVGAASVVAKVTRDRAIRELEQQYGAIG----SGYPSDPATIEFLRGYI 176

Query: 189 KEKG-PSCIHRLTFRPLRNL 207
           +  G P    R +++ + NL
Sbjct: 177 RSHGSPPACARRSWKTVTNL 196


>gi|227497524|ref|ZP_03927752.1| possible ribonuclease H [Actinomyces urogenitalis DSM 15434]
 gi|226833027|gb|EEH65410.1| possible ribonuclease H [Actinomyces urogenitalis DSM 15434]
          Length = 253

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 95/232 (40%), Gaps = 42/232 (18%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISH 65
           RP  ELE  +       VAG+DEVGRGALAGPV V   ++D   P++ P G+ DSK++S 
Sbjct: 12  RPDRELETTLLAS-HRVVAGMDEVGRGALAGPVSVGVALVDTTTPDHFPHGLADSKQLSP 70

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHA---VENLQVIPRSALID 121
            +RE L        +  +++ A    ID   +  A   A   A   V +    P   ++D
Sbjct: 71  TRREALQAPCRDWVLDCAVAHAWPAEIDALGMVGALRLAGLRALVEVASRGHRPDVVILD 130

Query: 122 GRSIPEDLP--------------CQAFAVIKGDSISLSIAAASIIAKV------------ 155
           G +     P                A A ++    SL +A   +  +V            
Sbjct: 131 GVADWLSEPATDLLTELSASQPVHPAVAEVRHQMDSLGLATPPVRMQVKADARCAVVAAA 190

Query: 156 ------TRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
                  RD LM       P YG+ S+ GY +A H   +   G S  HR ++
Sbjct: 191 SVLAKVERDALMTELDD--PGYGWASNKGYASAAHVAGLGRLGASDQHRRSW 240


>gi|321159924|pdb|3P83|D Chain D, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
           Fulgidus.
 gi|321159925|pdb|3P83|E Chain E, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
           Fulgidus.
 gi|321159926|pdb|3P83|F Chain F, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
           Fulgidus
          Length = 217

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 63/200 (31%), Positives = 98/200 (49%), Gaps = 24/200 (12%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAIISIS 84
           AGIDE G+G + GP+VVA +     +     G+ DSKK+S  +REEL E+I       + 
Sbjct: 15  AGIDEAGKGCVIGPLVVAGVACSDEDRLRKLGVKDSKKLSQGRREELAEEIRKICRTEVL 74

Query: 85  SASHQYIDKHNIHKATLDAIYHAVEN--LQVIPRSALIDGRS-IPEDL--------PCQA 133
             S + +D+    K   + +        L++ P  A +D    IPE L          + 
Sbjct: 75  KVSPENLDERMAAKTINEILKECYAEIILRLKPEIAYVDSPDVIPERLSRELEEITGLRV 134

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK- 191
            A  K D     +AAASIIAKV R+R +    +K+ D+G     GY +  + ++V+KE  
Sbjct: 135 VAEHKADEKYPLVAAASIIAKVEREREIERLKEKFGDFG----SGYASDPRTREVLKEWI 190

Query: 192 ----GPSCIHRLTFRPLRNL 207
                PSC+ R+ ++ + NL
Sbjct: 191 ASGRIPSCV-RMRWKTVSNL 209


>gi|124486303|ref|YP_001030919.1| ribonuclease HII [Methanocorpusculum labreanum Z]
 gi|189043623|sp|A2STJ6|RNH2_METLZ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|124363844|gb|ABN07652.1| RNase HII [Methanocorpusculum labreanum Z]
          Length = 212

 Score =  137 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 51/203 (25%), Positives = 89/203 (43%), Gaps = 23/203 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAII 81
             + G+DE G+G + GP++ A +++   +     GI DSKK+S KKRE L+E+IT S   
Sbjct: 1   MTICGVDEAGKGPVLGPMITAGVLVSDMSELEMLGIKDSKKLSPKKRESLFEEITFSWKT 60

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF------- 134
                +   ID          A  HA     +      +D   +      +         
Sbjct: 61  YTVVRTPFDIDSREGTMNAFTASCHADVVRALCADFVYLDACDVNAKRFGENVLRLSGSS 120

Query: 135 ----AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK-----HQ 185
               +  K D+    + AASI+AKVTRDR +    ++Y + G     GYP+         
Sbjct: 121 AHVCSEHKADAKYAVVGAASIVAKVTRDRCIADLKEEYGEIG----SGYPSDPATISFLT 176

Query: 186 QVIKEKGPSCI-HRLTFRPLRNL 207
           + I+ +G   +  R +++ ++++
Sbjct: 177 EYIRTRGEVPLCARRSWQTVQDI 199


>gi|14278646|pdb|1I39|A Chain A, Rnase Hii From Archaeoglobus Fulgidus
 gi|14278647|pdb|1I3A|A Chain A, Rnase Hii From Archaeoglobus Fulgidus With Cobalt
           Hexammine Chloride
          Length = 225

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 63/200 (31%), Positives = 98/200 (49%), Gaps = 24/200 (12%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAIISIS 84
           AGIDE G+G + GP+VVA +     +     G+ DSKK+S  +REEL E+I       + 
Sbjct: 23  AGIDEAGKGCVIGPLVVAGVACSDEDRLRKLGVKDSKKLSQGRREELAEEIRKICRTEVL 82

Query: 85  SASHQYIDKHNIHKATLDAIYHAVEN--LQVIPRSALIDGRS-IPEDL--------PCQA 133
             S + +D+    K   + +        L++ P  A +D    IPE L          + 
Sbjct: 83  KVSPENLDERMAAKTINEILKECYAEIILRLKPEIAYVDSPDVIPERLSRELEEITGLRV 142

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK- 191
            A  K D     +AAASIIAKV R+R +    +K+ D+G     GY +  + ++V+KE  
Sbjct: 143 VAEHKADEKYPLVAAASIIAKVEREREIERLKEKFGDFG----SGYASDPRTREVLKEWI 198

Query: 192 ----GPSCIHRLTFRPLRNL 207
                PSC+ R+ ++ + NL
Sbjct: 199 ASGRIPSCV-RMRWKTVSNL 217


>gi|11498229|ref|NP_069455.1| ribonuclease HII (rnhB) [Archaeoglobus fulgidus DSM 4304]
 gi|7388077|sp|O29634|RNH2_ARCFU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|2650000|gb|AAB90620.1| ribonuclease HII (rnhB) [Archaeoglobus fulgidus DSM 4304]
          Length = 205

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/200 (31%), Positives = 98/200 (49%), Gaps = 24/200 (12%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAIISIS 84
           AGIDE G+G + GP+VVA +     +     G+ DSKK+S  +REEL E+I       + 
Sbjct: 3   AGIDEAGKGCVIGPLVVAGVACSDEDRLRKLGVKDSKKLSQGRREELAEEIRKICRTEVL 62

Query: 85  SASHQYIDKHNIHKATLDAIYHAVEN--LQVIPRSALIDGRS-IPEDL--------PCQA 133
             S + +D+    K   + +        L++ P  A +D    IPE L          + 
Sbjct: 63  KVSPENLDERMAAKTINEILKECYAEIILRLKPEIAYVDSPDVIPERLSRELEEITGLRV 122

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK- 191
            A  K D     +AAASIIAKV R+R +    +K+ D+G     GY +  + ++V+KE  
Sbjct: 123 VAEHKADEKYPLVAAASIIAKVEREREIERLKEKFGDFG----SGYASDPRTREVLKEWI 178

Query: 192 ----GPSCIHRLTFRPLRNL 207
                PSC+ R+ ++ + NL
Sbjct: 179 ASGRIPSCV-RMRWKTVSNL 197


>gi|257456662|ref|ZP_05621855.1| ribonuclease HII [Treponema vincentii ATCC 35580]
 gi|257445929|gb|EEV20979.1| ribonuclease HII [Treponema vincentii ATCC 35580]
          Length = 165

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/158 (34%), Positives = 75/158 (47%), Gaps = 16/158 (10%)

Query: 60  SKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR-- 116
            KK+S K+RE     I   A+   I+S     IDK NI +ATL A+  A + L    R  
Sbjct: 3   QKKLSPKRRETARAAILEGALYWHIASMPPDLIDKINILQATLAAMKEAFDRLFARYRRD 62

Query: 117 ------------SALIDGRSIPEDL-PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163
                       + ++DG  +P+        A  K D     + AASI+AK  RDR M  
Sbjct: 63  SIGKTADIEKSLTVIVDGNQLPDIHGDFNLTAEPKADGRYPCVMAASILAKTERDRCMME 122

Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            HK+YP Y +D H GY T  H+ +I+  G S I R +F
Sbjct: 123 YHKQYPLYRYDLHKGYGTKLHRSLIEVYGASPIQRHSF 160


>gi|73670221|ref|YP_306236.1| ribonuclease HII [Methanosarcina barkeri str. Fusaro]
 gi|97182902|sp|Q468N6|RNH2_METBF RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|72397383|gb|AAZ71656.1| RNase HII [Methanosarcina barkeri str. Fusaro]
          Length = 224

 Score =  135 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 94/216 (43%), Gaps = 39/216 (18%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI- 80
           +AGIDE G+G + GP+ +  + ++ +        G+ DSKK++ KKRE+L  +I   A  
Sbjct: 3   IAGIDEAGKGPVIGPMCIGGVKIEESRAHILKVLGVADSKKLTPKKREQLAAQIKKHADG 62

Query: 81  ISISSASHQYIDKHN----IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP------ 130
             +   S   ID+      +++  +      +E L+  P     D   +  +        
Sbjct: 63  FFVLEVSPSQIDELRKIMTMNEIMVVCFSKVLEQLK--PDLLYADAADVNAERFATNIRK 120

Query: 131 ------------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
                        +  ++ + D+    ++AASIIAKV RD L+    K   ++G D   G
Sbjct: 121 QYSKTNPDHAKEIEIISMHQADATYPVVSAASIIAKVRRDELIEELKK---EWGLDFGSG 177

Query: 179 YPT-AKHQQVIKEKG------PSCIHRLTFRPLRNL 207
           YP+  K ++ +   G         I R +++ + N+
Sbjct: 178 YPSDPKTKEFLLNWGKEHSGEFPEIVRQSWQTVENI 213


>gi|240147025|ref|ZP_04745626.1| ribonuclease HII [Roseburia intestinalis L1-82]
 gi|257200803|gb|EEU99087.1| ribonuclease HII [Roseburia intestinalis L1-82]
          Length = 116

 Score =  135 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 51/116 (43%), Positives = 69/116 (59%), Gaps = 2/116 (1%)

Query: 33  GRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYI 91
           GRG LAGPVV  A+IL  +     INDSKK++  KREELY++I   A+   I   S Q I
Sbjct: 2   GRGPLAGPVVAGAVILPKDCDILYINDSKKLTAVKREELYDEIMEKAVAAGIGMVSPQRI 61

Query: 92  DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147
           D+ NI +AT +A+  A+  L+  P   L D  +IPE +      +IKGD+ S+SI 
Sbjct: 62  DEINILQATYEAMREAISKLEPAPDILLNDAVTIPE-VTIPQVPIIKGDAKSISIG 116


>gi|298674468|ref|YP_003726218.1| ribonuclease HII [Methanohalobium evestigatum Z-7303]
 gi|298287456|gb|ADI73422.1| ribonuclease HII [Methanohalobium evestigatum Z-7303]
          Length = 218

 Score =  135 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 38/215 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI- 80
           VAGIDE G+G + G + +A +++D   I      G+ DSKKIS +KREEL  KI      
Sbjct: 3   VAGIDEAGKGPVIGSMCIAGVVVDEAKINSLKNLGVTDSKKISPRKREELAHKIKKYVDN 62

Query: 81  ISISSASHQYIDKHN----IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL------- 129
             I   +   ID+      ++   +      VENL   P    +D   +  +        
Sbjct: 63  YFIFEITPSQIDELRNVMSMNDIMVLGFSRVVENLN--PELVYVDSADVKPERFAEKIRS 120

Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
                        +  +  + D +   ++AASIIAKV RD L+    +++   G D   G
Sbjct: 121 EYSKSNKTASENIKIISEHEADVVYSVVSAASIIAKVRRDELVNNLKEEF---GVDFGSG 177

Query: 179 YPTAKH-----QQVIKEKGPSC-IHRLTFRPLRNL 207
           YP+           +K  G    I R +++  + L
Sbjct: 178 YPSDPKTKQFLLDWVKRYGSLPDIVRHSWKTAQKL 212


>gi|257076035|ref|ZP_05570396.1| ribonuclease HII [Ferroplasma acidarmanus fer1]
          Length = 205

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 58/203 (28%), Positives = 88/203 (43%), Gaps = 30/203 (14%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNI---PFGINDSKKISHKKREELYEKITSSAIISI 83
            GIDE GRG L GP+V+A  IL  +       G+ DSKK+S  +RE L+ ++ S    + 
Sbjct: 4   CGIDEAGRGPLIGPMVMA--ILCGDRESLEIIGVADSKKLSPGRRESLFARLQSY-KYNF 60

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENLQVIP---RSALIDGRSIPE---------DLPC 131
              S   ID++  H+            L        +  +D   + E         +   
Sbjct: 61  VIISPSEIDRYVEHQKLNVLEETYASKLASWAPASSTVYVDSFDVNELRLQSLLMENTKR 120

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH-----QQ 186
           Q     K D I   ++AASIIAKV RDR +   HK Y D+G     GYP+        + 
Sbjct: 121 QIVCRHKADEIYPCVSAASIIAKVIRDREIDKLHKDYGDFG----SGYPSDPRTINFVKN 176

Query: 187 VIKEKGPS--CIHRLTFRPLRNL 207
            +K  G +   I R  ++  +++
Sbjct: 177 ALKN-GINIDSIVRHQWKTYKSM 198


>gi|254445906|ref|ZP_05059382.1| ribonuclease HII [Verrucomicrobiae bacterium DG1235]
 gi|198260214|gb|EDY84522.1| ribonuclease HII [Verrucomicrobiae bacterium DG1235]
          Length = 250

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 77/239 (32%), Positives = 98/239 (41%), Gaps = 69/239 (28%)

Query: 21  KNMWPVAGIDEVGRG----------------------ALAGPVVVAAIILDPNNIPFGIN 58
           KN   + GIDE GRG                                           IN
Sbjct: 15  KNRIGLIGIDEAGRGALAGPVVAAAVAAKEGFYDSEWC--------------KRNASSIN 60

Query: 59  DSKKISHKKREELYEKITS-----SAIISISSASHQYIDKHNIHKATLDAIYHAVENL-- 111
           DSK +S  +REELY K+         +I +   S   I+  NI  AT  A+  AVE +  
Sbjct: 61  DSKLLSLAQREELYAKLRWLEREGRILIGVGKGSISEIEDLNILGATQAAMKRAVEEILE 120

Query: 112 --QVIPRS---------------------ALIDGRSIPEDLPCQAFAVIKGDSISLSIAA 148
              + P                        L+DG+ + + L  +  AV+KGDS SL IA 
Sbjct: 121 QGDISPHDPDPLFDAALGGEPRETLSQWRLLVDGKPM-KHLGFKHEAVVKGDSKSLCIAM 179

Query: 149 ASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           ASIIAKVTRDR+M     +YP Y   S  GY T  H+  I + GP+ IHR  F  LR L
Sbjct: 180 ASIIAKVTRDRIMMALDCEYPHYDLASSKGYATVLHRTAILDNGPTKIHRPLF--LRKL 236


>gi|16082425|ref|NP_394911.1| ribonuclease HII [Thermoplasma acidophilum DSM 1728]
 gi|11387092|sp|P57673|RNH2_THEAC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|10640800|emb|CAC12578.1| probable ribonuclease HII [Thermoplasma acidophilum]
          Length = 212

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 91/198 (45%), Gaps = 21/198 (10%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISISS 85
            GIDE GRG + GP+V++ +  D + +    + DSK ++ K+R EL+EKI     +    
Sbjct: 8   CGIDEAGRGPVIGPMVISLVCCDLSFLKEIRVKDSKALTRKRRSELFEKIMGRCSVRYRI 67

Query: 86  ASHQYIDKHNIHKATLDAIY-HAVENLQVIPRSALIDGRSIPEDLPC---------QAFA 135
              + +++    ++         V+ L+       ID   + E+            Q   
Sbjct: 68  LHPKDLNRMMAAESLNKIEEDEIVDLLRYADDLVYIDCYDVIEERAQEIIQMRSGRQVVC 127

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEKG-- 192
             K D+I  +++AASI++KV RD  +   H ++ D+G     GYP+  +    +K+    
Sbjct: 128 KHKADAIFPAVSAASIVSKVIRDAEIDRLHDRFGDFG----SGYPSDPRTIDFLKKYLKE 183

Query: 193 ---PSCIHRLTFRPLRNL 207
              PS I R+ +  ++ L
Sbjct: 184 NQDPSEIVRIHWSTVQRL 201


>gi|239944789|ref|ZP_04696726.1| ribonuclease HII [Streptomyces roseosporus NRRL 15998]
 gi|239991253|ref|ZP_04711917.1| ribonuclease HII [Streptomyces roseosporus NRRL 11379]
          Length = 197

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 89/168 (52%), Gaps = 4/168 (2%)

Query: 44  AAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLD 102
            A I      P G+ DSK ++ ++R EL   + S     ++  AS Q ID   +  A   
Sbjct: 2   CAAITGLRRPPEGLTDSKLLTPRRRAELEPVLRSWVTACALGDASPQEIDDLGMTAALRL 61

Query: 103 AIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162
           A   A+E L V P + ++DG+      P +   VIKGD   +++AAAS+IAKV RDR+M 
Sbjct: 62  AAVRALEGLPVRPDAVILDGKHDYLGAPWKVRTVIKGDQSCIAVAAASVIAKVHRDRMMA 121

Query: 163 IAH---KKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
                 +    + FD++ GYP+  H+  ++E+GP+  HRL++  L  L
Sbjct: 122 ELGAASEDCGGFAFDANAGYPSPVHRAALEERGPTVHHRLSWSYLDAL 169


>gi|41614859|ref|NP_963357.1| hypothetical protein NEQ063 [Nanoarchaeum equitans Kin4-M]
 gi|74579762|sp|Q74MH3|RNH2_NANEQ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|40068583|gb|AAR38918.1| NEQ063 [Nanoarchaeum equitans Kin4-M]
          Length = 200

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 90/187 (48%), Gaps = 16/187 (8%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAIISISSA 86
           G+DE GRG + GP+V+A +I D   +   G+ DSK ++ ++REEL+ +I  ++++     
Sbjct: 5   GVDEAGRGPIIGPMVIALVIGDSGYLKELGVKDSKLLTKEQREELFNEIVKNSLVKYEIV 64

Query: 87  SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI---- 142
           S   ID++N+++       + + +++      +ID    PE+   +    +K        
Sbjct: 65  SPSLIDRYNLNELEAKVTANLINSIEDEISHIVIDSPERPENYKLRILKYLKKRVKIITK 124

Query: 143 -----SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK--GPS 194
                   +AAASI+AKV RDR +    +     G D   GYP+  + ++ +++      
Sbjct: 125 NKGEEDPLVAAASIVAKVIRDREIEKIKE---QTGIDFGSGYPSDKRTRKALEQYYRILK 181

Query: 195 CIHRLTF 201
              R  +
Sbjct: 182 PYIRKKW 188


>gi|325960150|ref|YP_004291616.1| ribonuclease Hii [Methanobacterium sp. AL-21]
 gi|325331582|gb|ADZ10644.1| ribonuclease HII [Methanobacterium sp. AL-21]
          Length = 204

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 29/207 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG++ GP+VV  + ++   +       + DSKK++ K+R  LY KI   A  
Sbjct: 3   IVGIDEAGRGSVLGPLVVCGVSIEEERLKYLERLKLKDSKKVTPKRRIVLYRKIKKIADC 62

Query: 82  SISSASHQYIDKHNIHKATLDAIYH-AVENL--QVIPRSALIDGRSIPEDL--------- 129
                S   ID        L+ I   A++ +     P  + ID   +  +          
Sbjct: 63  HPVHISAADIDLLRSKDVNLNEIEKIAIKQIIGNCDPDISYIDCIDVKPERFTNEIENFQ 122

Query: 130 -PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
              +  A    D     ++AASI+AKV RD+ +    K++ + G     GYP+       
Sbjct: 123 ENLKVVAEHGADDTYPIVSAASIVAKVERDQEISRLKKEFGEIG----SGYPSDPKTVAY 178

Query: 189 KEKGPSCI------HRLTFRPLRNLSV 209
            +   +         R ++  +  + +
Sbjct: 179 LK--ATPYKELPIFVRRSWSTVEKMRL 203


>gi|119719808|ref|YP_920303.1| ribonuclease HII [Thermofilum pendens Hrk 5]
 gi|189043673|sp|A1RYM0|RNH2_THEPD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|119524928|gb|ABL78300.1| RNase HII [Thermofilum pendens Hrk 5]
          Length = 213

 Score =  134 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 56/216 (25%), Positives = 88/216 (40%), Gaps = 35/216 (16%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS 78
           M  VAGIDE GRG + GP+VVA ++     +P     G+ DSK +S ++R  L   I S 
Sbjct: 1   MGRVAGIDEAGRGPMLGPMVVAIVVCPEEKVPLLRNMGVRDSKALSPRRRLLLSRAIPSV 60

Query: 79  -AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR----------SIPE 127
              + +     Q ID     +   +  +        +    L +G            +P 
Sbjct: 61  GCSVKVRVVEPQEIDCAVRGECYENLNHLEAAVFAQLINEVLSEGELEVVYMDSPDPVPS 120

Query: 128 DLPCQAFAVIKG----------DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
               +  A++KG          D     + AASI+AK TRD ++    K Y D+G     
Sbjct: 121 RFEERVRALLKGQVRIVAENGADEKYTIVGAASIVAKETRDEIINALKKTYGDFG----S 176

Query: 178 GYPTAKHQ-----QVIKEKG-PSCIHRLTFRPLRNL 207
           GYP+         + +++ G P  I R  +   + L
Sbjct: 177 GYPSDPRTLRFAEEWVRKHGEPPPIARKEWATWKRL 212


>gi|312137140|ref|YP_004004477.1| rnase hii [Methanothermus fervidus DSM 2088]
 gi|311224859|gb|ADP77715.1| RNase HII [Methanothermus fervidus DSM 2088]
          Length = 200

 Score =  134 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/201 (25%), Positives = 83/201 (41%), Gaps = 20/201 (9%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAII 81
             + GIDE GRG + GP++V  +++D  N      + DSK +S ++R+ L ++I   +  
Sbjct: 1   MSILGIDEAGRGPVLGPLIVCGVLVDDENKLKKLNVRDSKLLSPRRRKILAKEIKKVSKC 60

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVI---PRSALIDGRSIPEDL--------P 130
            I       IDK  I   +L+ I     +  +    P+  ++D   I             
Sbjct: 61  FIVKIQAYEIDKLRIAGISLNEIERIAMSKIIKNANPKKVIVDSIDIKPKRLKKKLQKEN 120

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----TAKHQQ 186
            +     K D     ++AASI+AKV RD  +    K+   Y  D   GYP    T K  +
Sbjct: 121 IEVIVEHKADEKYPVVSAASIVAKVERDSEIEKLKKR---YNCDLGSGYPNDPKTIKFLK 177

Query: 187 VIKEKGPSCIHRLTFRPLRNL 207
             K        R T+  +  L
Sbjct: 178 KFKRSELPDFVRKTWNTVEKL 198


>gi|21228916|ref|NP_634838.1| ribonuclease HII [Methanosarcina mazei Go1]
 gi|34395785|sp|Q8PTA3|RNH2_METMA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|20907449|gb|AAM32510.1| Ribonuclease [Methanosarcina mazei Go1]
          Length = 220

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 35/214 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI- 80
           +AGIDE G+G + GP+ +  + +D +        G+ DSKK++ KKRE+L  +I   A  
Sbjct: 3   IAGIDEAGKGPVIGPMCIGGVKIDESKAHILKVLGVADSKKLTPKKREQLASQIKKHADG 62

Query: 81  ISISSASHQYIDKHN----IHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDL---- 129
             I   S   ID+      +++  +      +E L+   V   +A +      E+L    
Sbjct: 63  YFIFEVSPSQIDELRKIMSMNEIMVVCFAKVLEQLKPDIVYADAADVKAERFAENLLRQY 122

Query: 130 ---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
                      +  ++ + D+I   ++AASIIAKV RD L+    +   ++  D   GYP
Sbjct: 123 AKTSPDHAKKIKVVSMHQADAIYPVVSAASIIAKVRRDELIEELKR---EWCIDFGSGYP 179

Query: 181 TAKH-----QQVIKEKG--PSCIHRLTFRPLRNL 207
           +         +  KE G     I R +++ + N+
Sbjct: 180 SDPKTRGFLLKWGKEHGGDFPDIVRQSWQTVENI 213


>gi|305663629|ref|YP_003859917.1| ribonuclease HII [Ignisphaera aggregans DSM 17230]
 gi|304378198|gb|ADM28037.1| ribonuclease HII [Ignisphaera aggregans DSM 17230]
          Length = 232

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 93/206 (45%), Gaps = 31/206 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-I 80
           + GIDE GRG L G + +A I+++ + +      G+ DSK++S +KR + +  I  ++ +
Sbjct: 5   ICGIDEAGRGPLIGDMFIAMIVINTDALKYLENIGVRDSKRLSREKRIKFFPIIIENSEL 64

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPEDL-------- 129
           + IS  +   +D+ NI+K  L+ +   ++   ++        ID  + P  L        
Sbjct: 65  VLISRLTPSQLDEENINKLELNTVCRLIKKSISIVSTISEIYIDAFANPNKLLHYINSNC 124

Query: 130 -----PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AK 183
                    +     D+  + + AASI+AKV RD  +    K Y D+G     GYP+  K
Sbjct: 125 IASNRSINVYIEHGADNKYVVVGAASIVAKVLRDTHIDNLKKVYGDFG----SGYPSDKK 180

Query: 184 HQQVIKEK-----GPSCIHRLTFRPL 204
             + ++           I R ++  +
Sbjct: 181 TIEWLRNYYAKHNALPPIVRKSWSTI 206


>gi|320096209|ref|ZP_08027796.1| ribonuclease HII [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319976857|gb|EFW08613.1| ribonuclease HII [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 225

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 71/212 (33%), Positives = 105/212 (49%), Gaps = 26/212 (12%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREEL 71
            E  + ++    VAG+DEVGRG+LAGPV V   +  P   + P G+ DSK ++ K+RE L
Sbjct: 10  FEQSLADQ-FGVVAGVDEVGRGSLAGPVAVGVALTSPGAADPPAGLVDSKALTAKRREAL 68

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRS--- 124
              +   A+  ++  A    ID+  I  A   A   A++ L     +P + ++DG     
Sbjct: 69  APAVRQWALDCAVGWAGPDEIDQWGIVAALRLAGLRALDELAGRGRVPGAVVLDGSHNWL 128

Query: 125 -IPEDL-------------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170
            +PEDL             P    A +K D+    +AAAS+IAKV RDRLM       P 
Sbjct: 129 AMPEDLLGGLGGPDYPPPCPAPIRARVKADASCAVVAAASVIAKVERDRLMAELDD--PG 186

Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           Y +  + GY +A H   + E GPS  HR +++
Sbjct: 187 YEWSRNKGYASAAHIAALAELGPSAHHRRSWK 218


>gi|307595739|ref|YP_003902056.1| ribonuclease HII [Vulcanisaeta distributa DSM 14429]
 gi|307550940|gb|ADN51005.1| ribonuclease HII [Vulcanisaeta distributa DSM 14429]
          Length = 218

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 91/212 (42%), Gaps = 36/212 (16%)

Query: 25  PVAGIDEVGRGALAGPVVVA-AIILDPNNIP-FGINDSKKISHKKREELYEKITSSA-II 81
            V GIDE GRG + GP+V+A A+  D N +   GI DSK++S   R  L+  + S+   I
Sbjct: 4   LVGGIDEAGRGPVIGPMVMAIAVTNDMNRLKAMGIRDSKELSPAGRARLFSILKSTLNYI 63

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENL------QVIPRSALIDGRSIPEDLPCQAFA 135
                  + ID +    A           L       V P+   ID    P+  P +   
Sbjct: 64  DYEIVEPRVIDNYVYMNALNILEVEIAIKLINRALNSVSPQVVYIDS---PDPRPERYRD 120

Query: 136 VIK--------------GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
           ++K               D +   ++AASI+AKV RD ++   H++Y D+G     GYP+
Sbjct: 121 MVKRGVVGNVEVVAMNNADKLIPVVSAASIVAKVIRDSIIEELHREYGDFG----SGYPS 176

Query: 182 AKH-----QQVIKEKG-PSCIHRLTFRPLRNL 207
                   +  +K  G    I R ++  +R L
Sbjct: 177 DPRTMAFLRDWVKRHGDLPPIVRRSWSTVRKL 208


>gi|325067038|ref|ZP_08125711.1| putative ribonuclease H [Actinomyces oris K20]
          Length = 244

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 103/226 (45%), Gaps = 36/226 (15%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISH 65
           RP   LE  + E     V G+DEVGRGALAGPV V   I+     ++ P G+ DSK+++ 
Sbjct: 8   RPDRSLEKALLET-YDYVGGLDEVGRGALAGPVSVGLAIVARRTDDDFPEGLADSKQLTA 66

Query: 66  KKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHA---VENLQVIPRSALID 121
           + R  L E +       +++ AS   ID+H I  A   A   A   V +    PR  ++D
Sbjct: 67  RARTGLVEPVRGWLVDHAVAHASPAEIDEHGIVAALRMAGLRALQQVADRGHAPRIIILD 126

Query: 122 GR------------------SIPEDLPCQAFAV--------IKGDSISLSIAAASIIAKV 155
           G                    + E  P  A  +        +K D+    +AAAS++AKV
Sbjct: 127 GVADWLTAAQPDLLTALEGAHVSETAPAPAEVLSTPPVHMEVKADARCAVVAAASVLAKV 186

Query: 156 TRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            RDRLM       P YG+ S+ GY +  H + +   G S  HR ++
Sbjct: 187 ERDRLMADLDD--PGYGWASNKGYASPAHVRGLTVLGASDQHRRSW 230


>gi|119872804|ref|YP_930811.1| ribonuclease HII [Pyrobaculum islandicum DSM 4184]
 gi|189043646|sp|A1RU36|RNH2_PYRIL RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|119674212|gb|ABL88468.1| RNase HII [Pyrobaculum islandicum DSM 4184]
          Length = 195

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 22/199 (11%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSSA----- 79
           + GIDE GRG + GP+V+AA+  D   +   G+ DSK +S  KRE +Y +I   A     
Sbjct: 2   ICGIDEAGRGPVVGPMVIAAVAGDGERLLQLGVRDSKTLSPTKREVIYARIIEVADCVNY 61

Query: 80  IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139
           ++       +Y+ +  ++   LD     +E          +D   +       A + I G
Sbjct: 62  VVVEPHIIDEYVRRRMLNSLELDFTARLIEL--CPAELYYVDSPDVNSRRYGDALSFITG 119

Query: 140 DSI--------SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
             +           +AAASI+AKV RDRL+ I  ++  D+G     GYP+          
Sbjct: 120 RRVVALHGGESVPQVAAASIVAKVIRDRLIDILKREIGDFG----SGYPSDVKTIEWLRL 175

Query: 192 GPSCI--HRLTFRPLRNLS 208
           G   +   R ++R LR L+
Sbjct: 176 GKIPVECVRRSWRTLRYLN 194


>gi|150401039|ref|YP_001324805.1| ribonuclease HII [Methanococcus aeolicus Nankai-3]
 gi|189043622|sp|A6UUM1|RNH2_META3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|150013742|gb|ABR56193.1| ribonuclease HII [Methanococcus aeolicus Nankai-3]
          Length = 277

 Score =  131 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 60/233 (25%), Positives = 93/233 (39%), Gaps = 49/233 (21%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI 75
             N   + G+DE GRG + GP+V+A + +      N     I DSKK S  +REEL+E I
Sbjct: 16  NDNNKLIIGLDEAGRGPVLGPMVIALVKIKGQDLKNFEKLDIKDSKKHSKNRREELFEMI 75

Query: 76  TSSAIISISSASHQYIDKH----NIHKATLDAIYHAVENL--QVIPRS------------ 117
            ++  +       + IDK     N++K  L A    + ++  +  P              
Sbjct: 76  INNYDVRYEILEAKTIDKLMNTINLNKIELMAFTKLINSVLKEEYPNYKENSKIQTATPQ 135

Query: 118 --ALIDGRS---------------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160
               ID  S               + ++   +  A  K D     ++AASIIAKV RDR 
Sbjct: 136 IEIYIDACSSNEKAFANQIKSKLIVNDENNIKIIAEHKADENYKIVSAASIIAKVIRDRK 195

Query: 161 MRIAHKKYPDYGFDSHVGYPTAK-HQQVIKEK-----GPSCIHRLTFRPLRNL 207
           +    K Y + G     GYP+ K  Q+ +            I R ++   + L
Sbjct: 196 IEEYKKIYGEIG----SGYPSDKITQKYLANYVEKNRELPEIARKSWNTSKKL 244


>gi|326771770|ref|ZP_08231055.1| ribonuclease HII [Actinomyces viscosus C505]
 gi|326637903|gb|EGE38804.1| ribonuclease HII [Actinomyces viscosus C505]
          Length = 240

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 101/225 (44%), Gaps = 36/225 (16%)

Query: 10  PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISHK 66
           P   LE  + E     V G+DEVGRGALAGPV V   I+     ++ P G+ DSK+++ +
Sbjct: 9   PDRSLEKALLET-YDYVGGLDEVGRGALAGPVSVGLAIVARRTDDDFPEGLADSKQLTAR 67

Query: 67  KREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHA---VENLQVIPRSALIDG 122
            R  L E +       +++ AS   ID+H I  A   A   A   V +    P   ++DG
Sbjct: 68  ARTVLIEPVRGWLVDHAVAHASPAEIDEHGIIGALRVAGLRALQQVADRGHAPGVIILDG 127

Query: 123 R------------------SIPEDLPCQAFA--------VIKGDSISLSIAAASIIAKVT 156
                                P+D P  A           +K D+    +AAAS++AKV 
Sbjct: 128 VADWLTAPQPDLLTTLESTHAPKDSPEPAEVPSTPPVRMEVKADARCAVVAAASVLAKVE 187

Query: 157 RDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           RDRLM       P YG+ S+ GY +  H + +   G S  HR ++
Sbjct: 188 RDRLMADLDD--PGYGWASNKGYASPAHIRGLTSLGASDQHRRSW 230


>gi|168070408|ref|XP_001786800.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660445|gb|EDQ48386.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 240

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/99 (45%), Positives = 60/99 (60%), Gaps = 3/99 (3%)

Query: 104 IYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163
           +  AVE+L V P   L+D  ++  D P    A+I GD++S SI AASI+AKVTRDRL + 
Sbjct: 1   MKQAVESLGVRPCHLLVDAETVDLDFP--QTAIIHGDAVSQSIGAASILAKVTRDRLCKE 58

Query: 164 -AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
                YP YG   H GY T  H+ ++ E GPS +HR +F
Sbjct: 59  IWDLHYPAYGIAVHKGYATRHHRSMLIEHGPSPLHRRSF 97


>gi|219851606|ref|YP_002466038.1| ribonuclease HII [Methanosphaerula palustris E1-9c]
 gi|219545865|gb|ACL16315.1| ribonuclease HII [Methanosphaerula palustris E1-9c]
          Length = 219

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 92/204 (45%), Gaps = 27/204 (13%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKREELYEKITSSAI 80
           M  + G+DE G+GA+ GP+VVA +           G+ DSK+++  KRE+LY++I S   
Sbjct: 3   MPLICGVDEAGKGAVLGPMVVAGVASRDVSAVAALGVRDSKQLTRLKREDLYDQIRSICT 62

Query: 81  ISISSASHQYID--KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--------- 129
            +++  S   ID  + +     + A  HA     + P  A +D   +  D          
Sbjct: 63  TTVTVLSAADIDLARESATMNMIVARGHAAVISTLTPTLAYVDACDVNADRYRETVTALL 122

Query: 130 ----PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
                CQ  A  + DS    +AAASIIAKVTRDRL+     +    G     GYP+ ++ 
Sbjct: 123 EPAASCQVIAEHRADSTYPIVAAASIIAKVTRDRLVDALADECGQIG----SGYPSDRYT 178

Query: 186 QV-----IKE-KGPSCIHRLTFRP 203
                  I+    P    R +++ 
Sbjct: 179 IAYLSDYIRRHHAPPACARKSWKT 202


>gi|124027720|ref|YP_001013040.1| ribonuclease HII [Hyperthermus butylicus DSM 5456]
 gi|189043606|sp|A2BL34|RNH2_HYPBU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|123978414|gb|ABM80695.1| ribonuclease HII [Hyperthermus butylicus DSM 5456]
          Length = 240

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 55/214 (25%), Positives = 93/214 (43%), Gaps = 27/214 (12%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYE 73
           ++ +      GIDE GRG + GP+VV  + +  N+I      G+ DSK+++   R +LY 
Sbjct: 1   MQRRRCRYAIGIDEAGRGPVIGPMVVVGVAVCSNDIDKLVALGVRDSKQLTPVVRAKLYG 60

Query: 74  KITSSAIIS-ISSASHQYIDKHNIHKA---TLDAIYHAVENLQVIPRSALIDGRSIPED- 128
           +I   A+ S I       +D  N+++    T + I   +  +   P +  +D    PE  
Sbjct: 61  EILRVALHSVIVKLPPALLDAVNLNQLEVETFEYIASRIAGVHDSPEAVYVDAVGSPEKL 120

Query: 129 -------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                  L  +  A    D     ++AASI+AKV RD  +R+  + Y         GYPT
Sbjct: 121 AARLSGRLGVRVIAEPGADKTYPIVSAASIVAKVVRDAEIRMLRRLYGV----RGSGYPT 176

Query: 182 -AKHQQVIKEK------GPSCIHRLTFRPLRNLS 208
             +    + E+       P    R T+  L+ ++
Sbjct: 177 DPETIAWLAEEYRRNPANPPWFVRRTWSTLKRIA 210


>gi|288931994|ref|YP_003436054.1| ribonuclease HII [Ferroglobus placidus DSM 10642]
 gi|288894242|gb|ADC65779.1| ribonuclease HII [Ferroglobus placidus DSM 10642]
          Length = 211

 Score =  130 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 29/204 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81
           +AGIDE G+G + GP+VV  +  +  ++      G+ DSK++S +KR+EL EK+      
Sbjct: 3   IAGIDEAGKGPVIGPLVVCGVSCEEKDVEALKKLGVKDSKRLSPEKRKELAEKLKEIVEH 62

Query: 82  SISSASHQY----IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-PEDL------- 129
                S +     ++K  I++   +A    +  L   P    +D   + PE L       
Sbjct: 63  ETIVISPEELNSKMEKTTINEILKEACVEIISKLN--PDVVFVDSFDVKPERLEEELKRL 120

Query: 130 -PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH-QQV 187
              +  A+ +G+   + +AAASIIAK  RD ++    ++Y D+G     GY + +  ++ 
Sbjct: 121 TGKKVVAMHEGE-REVVVAAASIIAKCLRDEIIEELKREYGDFG----SGYASDEKTRRW 175

Query: 188 IKE---KG-PSCIHRLTFRPLRNL 207
           ++E   +G    I R  ++ + NL
Sbjct: 176 LEEQIKRGKIPEIVRKRWKTVENL 199


>gi|297380504|gb|ADI35391.1| Ribonuclease HII [Helicobacter pylori v225d]
          Length = 154

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 7/139 (5%)

Query: 73  EKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI---PE 127
           +KI +   I   +   S   ID   +      AI   +EN   +     IDG ++    +
Sbjct: 3   DKIKTHGEIKFWVVKKSANEIDNLGLGACLKLAIQKILENGCSLANQIKIDGNTVFGLNK 62

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
             P     +IKGD     IA AS++AK  +DR MR  H  + +YG+D + GY T +H + 
Sbjct: 63  RYP-NIQTIIKGDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEA 121

Query: 188 IKEKGPSCIHRLTFRPLRN 206
           + + G +  HR +F  L+N
Sbjct: 122 MIKLGATPFHRHSF-TLKN 139


>gi|159042290|ref|YP_001541542.1| ribonuclease HII [Caldivirga maquilingensis IC-167]
 gi|189043570|sp|A8MAH5|RNH2_CALMQ RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|157921125|gb|ABW02552.1| ribonuclease HII [Caldivirga maquilingensis IC-167]
          Length = 209

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 22/200 (11%)

Query: 27  AGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84
           AGIDE GRG + GP+V+A +   +      G+ DSK+++   R  LY+ I S A  +   
Sbjct: 9   AGIDEAGRGPVIGPMVIAIVGWSNSEAEGIGVKDSKQLTPSGRSRLYKLIVSKAPCVRHV 68

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK------ 138
                 ID +       +     +  L              P+  P +    I       
Sbjct: 69  IVEPSEIDYYVNRGLLNELEAIKMSELIKACSGVTRVYVDSPDPNPSRFRGFINVKDVEL 128

Query: 139 -----GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEKG 192
                 D     ++AASI+AKV RD ++    + Y D+G     GYP+  +    ++   
Sbjct: 129 IVLNHADESIPLVSAASIVAKVIRDTIISRLKETYGDFG----SGYPSDPRTISALRRWI 184

Query: 193 ----PSCIHRLTFRPLRNLS 208
                  I R ++R ++ ++
Sbjct: 185 NNGTLPPIVRRSWRTIKRMT 204


>gi|321262130|ref|XP_003195784.1| ribonuclease HI large subunit [Cryptococcus gattii WM276]
 gi|317462258|gb|ADV23997.1| Ribonuclease HI large subunit, putative [Cryptococcus gattii WM276]
          Length = 260

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/215 (25%), Positives = 87/215 (40%), Gaps = 33/215 (15%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYE--KITS 77
             + GIDE GRG + GP+V AA     +  P     G +DSK +S + R+ L+E  ++ S
Sbjct: 36  GWIMGIDEAGRGPVLGPMVYAAAYCPLSFKPTLESIGFDDSKALSAETRQRLWETFEVHS 95

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIY----------HAVENLQVIPRSALIDGRSIPE 127
               S S+ S Q I    + K  ++              A  N  +      +D      
Sbjct: 96  PLCYSSSTLSPQDISSSMLRKVPINLNRQAEDSTVGLIQAALNRGINVTECYVDALGPAP 155

Query: 128 DLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
               +  A+          K DS+   + AASI+AKVTRDR +    +   +       G
Sbjct: 156 QWQARLTAIFPTIKFTVCPKADSLFKIVGAASIVAKVTRDRYVHGWSEDEEEV--IRGSG 213

Query: 179 YPTAKHQQV-IKE-----KGPSCIHRLTFRPLRNL 207
           YP+    Q  +K+      G   I R ++  ++ L
Sbjct: 214 YPSDPKTQAYLKKSIDPVFGYKGIVRFSWATIKVL 248


>gi|84490178|ref|YP_448410.1| ribonuclease HII [Methanosphaera stadtmanae DSM 3091]
 gi|115305551|sp|Q2NEI6|RNH2_METST RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|84373497|gb|ABC57767.1| RnhB [Methanosphaera stadtmanae DSM 3091]
          Length = 212

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 92/206 (44%), Gaps = 29/206 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII 81
           + GIDE GRG++ GP+V+  +++    I F    G+ DSK+++ KKR  +  KI   A  
Sbjct: 9   ILGIDEAGRGSVIGPLVIGGVLMKKKKIRFLNRIGVKDSKQLNMKKRTIISRKIKKIAQF 68

Query: 82  SISSASHQYIDKHNIHKATLDA-----IYHAVENLQVIPRSALIDGRSIPEDL------- 129
                    ID+   +   L+      +   ++ ++  P +  ID   + E+        
Sbjct: 69  KTIIIPAHTIDEKRNNDINLNEIETEGMEEIIKIMK--PNACYIDCIDVRENRFHDKIQK 126

Query: 130 ---PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK--- 183
                      K D     ++AASIIAKV RD+ + I  ++Y   G     GYP+ K   
Sbjct: 127 INPNMTVVTEHKADETYKIVSAASIIAKVERDKQLEIIRQEYGSVG----SGYPSDKNTI 182

Query: 184 -HQQVIKEKGPSCIHRLTFRPLRNLS 208
            + + IK      I R T++ + N++
Sbjct: 183 NYLKTIKNNQFPPIIRKTWKTIENIT 208


>gi|304315158|ref|YP_003850305.1| ribonuclease HII [Methanothermobacter marburgensis str. Marburg]
 gi|302588617|gb|ADL58992.1| ribonuclease HII [Methanothermobacter marburgensis str. Marburg]
          Length = 207

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 26/204 (12%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           V GIDE GRG + GP+VVA +++           GI DSKK++ ++R+ L  KI   + +
Sbjct: 3   VLGIDEAGRGPVIGPLVVAGVMVPERKFSILRKMGIRDSKKLTPERRKFLARKIRRISRV 62

Query: 82  SISSASHQYIDKH-----NIHKATLDAIYHAVENLQVIPRSALIDGRSI-PEDL------ 129
                S   ID+      N+++    AI   +   +  P S +ID   + PE L      
Sbjct: 63  FTVKISASDIDRMREKGFNLNEIEKIAIKRIIA--EAQPDSVIIDSVDVKPERLTEEIRS 120

Query: 130 ---PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186
                +  A    D+    +AAASIIAKV RD  +    K+    G D   GYP+    +
Sbjct: 121 HFGDIEVKAEHGADAKYYPVAAASIIAKVERDLEIERIQKRNRKLG-DIGSGYPSDPRTR 179

Query: 187 VIKEK----GPSCIHRLTFRPLRN 206
              E           R ++  ++ 
Sbjct: 180 AFLESFSYDELPDFVRKSWATVQK 203


>gi|281202692|gb|EFA76894.1| hypothetical protein PPL_09646 [Polysphondylium pallidum PN500]
          Length = 1257

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 97/246 (39%), Gaps = 48/246 (19%)

Query: 3    CNSIPERPHFELEAMVREKNMWPV-AGIDEVGRGALAGPVVVAAIILDPNNIP----FGI 57
              + P+ P + ++  + +     V  GIDE GRG + GP+V AA  +   N+        
Sbjct: 971  NETAPDIPLY-MDMELDKSEYGVVTMGIDEAGRGPVLGPLVYAACYVPDCNLERMRKLRF 1029

Query: 58   NDSKKISHKKREELYEKITSS-------------AIISISSASHQYIDKHNIHKATLDAI 104
            +DSKK++  +RE L++ I  +             +++S    S Q +   +I   +   +
Sbjct: 1030 DDSKKLTEAQRETLFKTILGNYELLGFVSDVNEPSMLSEKMLSKQQVSLDSISHGSAFNL 1089

Query: 105  YHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI----------KGDSISLSIAAASIIAK 154
               V +      S  +D    P     +               K DS+   ++AASI AK
Sbjct: 1090 IQQVLDKGYNIESLYVDTVGPPAKYEAKIRVAFPSIKNVVVSKKADSLYPIVSAASICAK 1149

Query: 155  VTRDRLMRIAHKKYPDYGFDS-----------HVGYPT-AKHQQVIKE-----KGPSCIH 197
            V RDR+++     +  YG ++             GYP+    +  ++       G   I 
Sbjct: 1150 VIRDRIIKATD--FEKYGSNASGQNAPINTNIGSGYPSDPATKSWLRNNRDKVFGYPDIV 1207

Query: 198  RLTFRP 203
            R +++ 
Sbjct: 1208 RFSWKT 1213


>gi|294495980|ref|YP_003542473.1| RNase HII [Methanohalophilus mahii DSM 5219]
 gi|292666979|gb|ADE36828.1| RNase HII [Methanohalophilus mahii DSM 5219]
          Length = 215

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 33/208 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI- 80
           +AGIDE G+G + GP+ VA +I+D + I      G+ DSKK+S K+RE L  +I   A  
Sbjct: 3   IAGIDEAGKGPVIGPMCVAGVIMDESKINALKNLGVADSKKLSPKRRENLARQIRKYADG 62

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIPEDLPCQ------ 132
           I I       ID+     +  D +     ++   + P  A +D   +  +   +      
Sbjct: 63  IFIQEIEACQIDELRNIMSMNDIMIRGFSSVLENLKPDLAYVDAADVNAERFGKKLLAAF 122

Query: 133 -----------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                        +    D I   ++AASIIAKV RD L+            D   GYP+
Sbjct: 123 EKKHEREKKPEIISEHGADDIYPIVSAASIIAKVRRDELIGNIKT---AINEDFGSGYPS 179

Query: 182 -----AKHQQVIKEKG-PSCIHRLTFRP 203
                   Q+ + + G      R +++ 
Sbjct: 180 DPKTKKFLQEWMDKNGNLPDFVRHSWKT 207


>gi|183221052|ref|YP_001839048.1| putative ribonuclease H [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|167779474|gb|ABZ97772.1| Putative ribonuclease H [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 154

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/140 (33%), Positives = 68/140 (48%), Gaps = 28/140 (20%)

Query: 87  SHQYIDKHNIHKATLDAIYHAVENLQVIPRSA-----------------------LIDGR 123
           S ++ID+ NI++A    I  A   L V PR                          +DG 
Sbjct: 2   SAKFIDRFNINQAIFYGISRA---LPVNPRQVTGHLHKTGIPLGTQTKETLAPFLFVDGN 58

Query: 124 -SIPEDLPCQAF-AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
             +    P + + ++ KGD +  SI+AASI+AK  RD  M     KYP YGF  H GY T
Sbjct: 59  YKLKIHKPIEGYLSIPKGDDLVPSISAASILAKTYRDEYMEKMDAKYPGYGFAKHKGYGT 118

Query: 182 AKHQQVIKEKGPSCIHRLTF 201
            +H++ +++ G S IHRL+F
Sbjct: 119 EEHREALRKLGISPIHRLSF 138


>gi|170289973|ref|YP_001736789.1| ribonuclease HII [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174053|gb|ACB07106.1| ribonuclease HII [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 217

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 89/206 (43%), Gaps = 28/206 (13%)

Query: 27  AGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI-I 81
            GIDE GRG + GP+VVAA+IL           G+ DSK +S ++REEL+  I  SA   
Sbjct: 1   MGIDEAGRGPVIGPMVVAAVILKRREAKRLKEMGVTDSKLLSAERREELFPMIIESAESY 60

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDG------------RSIPE 127
            I     + ID+              +  L  ++ P   ++D             R    
Sbjct: 61  LIKVIEPKRIDEAVSKNMLNLLEAEVMSELIRELRPARVIVDSPMRNCRKFSDVLREFLG 120

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP-TAKHQQ 186
           D   +  A  K DS  + +A+ASIIAKV RDR +R   +     G +   GYP   K ++
Sbjct: 121 DSSVKIIAENKADSKYIQVASASIIAKVERDRRIRELSEL---TGVEIGSGYPGDPKTRE 177

Query: 187 VIKE--KG---PSCIHRLTFRPLRNL 207
            I+   KG   P    R  +  +  L
Sbjct: 178 AIRMILKGAEFPRDQVRWKWATINRL 203


>gi|171184725|ref|YP_001793644.1| ribonuclease HII [Thermoproteus neutrophilus V24Sta]
 gi|254807995|sp|B1YB67|RNH2_THENV RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|170933937|gb|ACB39198.1| ribonuclease HII [Thermoproteus neutrophilus V24Sta]
          Length = 198

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 20/193 (10%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSSA-----II 81
           G+DE GRG + GP+V+A ++ D   +   G+ DSK++S ++RE LY+ I  +A     ++
Sbjct: 7   GVDEAGRGPVVGPMVIAVVVGDGGVLARLGVRDSKRLSPERRERLYQLILEAADCVNYVV 66

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA---LIDGRSIPEDL----PCQAF 134
              +    Y+ +  ++   LD     +E             +D R     L      +  
Sbjct: 67  VEPAVVDTYVWRGLLNALELDYTAKLIELCPADVYYVDSPDVDPRRYGSALEFITGRRVV 126

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG-- 192
           A+ KG+S+   +AAASI+AKV RDRL+ +  K+  D+G     GYP+    +   + G  
Sbjct: 127 AMHKGESV-PQVAAASIVAKVVRDRLVALLKKEVGDFG----SGYPSDPRTREWLKWGRL 181

Query: 193 PSCIHRLTFRPLR 205
           P    R ++R LR
Sbjct: 182 PPECVRWSWRTLR 194


>gi|329947878|ref|ZP_08294810.1| ribonuclease HII [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328523502|gb|EGF50600.1| ribonuclease HII [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 240

 Score =  127 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 94/226 (41%), Gaps = 36/226 (15%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII---LDPNNIPFGINDSKKISH 65
           RP   LE  + E + + V G+DEVGRGALAGPV V   I      +  P  + DSK+++ 
Sbjct: 8   RPDRSLENELLEAHEY-VGGLDEVGRGALAGPVSVGLAIVGRCTDDAFPVDLADSKQLTA 66

Query: 66  KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHA---VENLQVIPRSALID 121
           + R +L E +    +  +++ AS   ID+  I  A   A   A   V +    P   ++D
Sbjct: 67  RMRTDLVEPVRGWLLDHAVAHASPAEIDERGIVGALRLAGRRALRQVADRGHAPGIIILD 126

Query: 122 GRSIPEDLPCQAFAVIKGDSISLSI---AAA-----------------------SIIAKV 155
           G +     P        GD         A A                       S++AKV
Sbjct: 127 GVADWLTAPQPDLLTTWGDGQPSQAWHEATAEPPTPPVRMEVKADARCAVVAAASVLAKV 186

Query: 156 TRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
            RD LM       P YG+ S+ GY +  H   + + G S  HR ++
Sbjct: 187 ERDSLMTDLTD--PGYGWASNKGYASPAHVAGLADLGASDQHRRSW 230


>gi|328907963|gb|EGG27723.1| ribonuclease HII [Propionibacterium sp. P08]
          Length = 119

 Score =  127 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 1/113 (0%)

Query: 94  HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIA 153
             + +A +  +  AV  L + P   L DG  + + L      + KGDS+   +AAASI+A
Sbjct: 1   MGMQEADISGLRRAVARLGIEPGYVLSDGFPV-DGLTVPDLGMWKGDSVCACVAAASIVA 59

Query: 154 KVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           KV RDR+M    ++ P Y F  H GY TA H++ ++E GPSC HR+++  ++ 
Sbjct: 60  KVVRDRIMIAMDREVPGYDFAVHKGYATALHRRRLEELGPSCQHRMSYANVQR 112


>gi|20090807|ref|NP_616882.1| ribonuclease HII [Methanosarcina acetivorans C2A]
 gi|34395791|sp|Q8TPF4|RNH2_METAC RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|19915872|gb|AAM05362.1| ribonuclease Hii [Methanosarcina acetivorans C2A]
          Length = 223

 Score =  127 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 91/214 (42%), Gaps = 35/214 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI- 80
           +AGIDE G+G + GP+ +  + ++ +        G+ DSKK++ KKRE+L  +I   A  
Sbjct: 3   IAGIDEAGKGPVIGPMCIGGVKIEESRAHILKVLGVADSKKLTPKKREQLASQIKKHADG 62

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIPEDL--------- 129
             I   +   ID+     +  + +      +  Q+ P     D   +  +          
Sbjct: 63  FFILEITPAQIDELRKIMSMNEIMVICFAKVLEQLKPDIVYADAADVKAERFAENLRRQY 122

Query: 130 ---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
                      +  ++ + D+I   ++AASIIAKV RD L+    K   ++  D   GYP
Sbjct: 123 AKTNPAHAKKIEIISMHQADAIYPVVSAASIIAKVRRDELIEEIKK---EWSVDFGSGYP 179

Query: 181 TAKHQQV-IKEKG------PSCIHRLTFRPLRNL 207
           +    +  + + G         I R +++ + N+
Sbjct: 180 SDPKTKAFLLKWGKEHDGKFPEIVRQSWQTVENI 213


>gi|58271424|ref|XP_572868.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57229127|gb|AAW45561.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 260

 Score =  127 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 84/217 (38%), Gaps = 33/217 (15%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK--I 75
               + GIDE GRG + GP+V AA     +  P     G +DSK +S + R+ L+E   +
Sbjct: 34  GEGWIMGIDEAGRGPVLGPMVYAAAYCPLSFKPILESIGFDDSKALSAETRQTLWESFGV 93

Query: 76  TSSAIISISSASHQYIDKHNIHKATLDAIY----------HAVENLQVIPRSALIDGRSI 125
                 S S+ S Q I  + + K  ++              A  N  +      +D    
Sbjct: 94  HPPLCYSSSTLSPQDISSNMLRKVPINLNRQAEDATVGLIQAALNRGINVTECYVDALGP 153

Query: 126 PEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
                 +  A+          K DS+   + AASI+AKVTRDR +    +   +      
Sbjct: 154 APQWQARLTAIFPTIKFTVCPKADSLFKIVGAASIVAKVTRDRYVHGWSQDEEEV--IRG 211

Query: 177 VGYPTAKHQQVIKE------KGPSCIHRLTFRPLRNL 207
            GYP+    Q   +       G   I R ++  ++ L
Sbjct: 212 SGYPSDPKTQAYLKGSIDPVFGYKGIVRFSWATVKVL 248


>gi|148643039|ref|YP_001273552.1| ribonuclease HII [Methanobrevibacter smithii ATCC 35061]
 gi|222445276|ref|ZP_03607791.1| hypothetical protein METSMIALI_00904 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350165|ref|ZP_05975582.1| ribonuclease HII [Methanobrevibacter smithii DSM 2374]
 gi|189043626|sp|A5ULV6|RNH2_METS3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|148552056|gb|ABQ87184.1| ribonuclease HII, RnhB [Methanobrevibacter smithii ATCC 35061]
 gi|222434841|gb|EEE42006.1| hypothetical protein METSMIALI_00904 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860951|gb|EFC93249.1| ribonuclease HII [Methanobrevibacter smithii DSM 2374]
          Length = 207

 Score =  127 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 80/204 (39%), Gaps = 25/204 (12%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81
           V GIDE GRG++ GP+V+A +I+           G+ DSK+++  +R  L  K+      
Sbjct: 3   VLGIDEAGRGSVLGPLVIAGVIVPEKMDIVLERMGVKDSKRLTPNRRTILSRKLKKMFEY 62

Query: 82  SISSASHQYIDKHNIHKATLDAIYH-----AVENLQVIPRSALIDG---------RSIPE 127
            +   S Q ID        L+ I        + NL   P  A++D            +  
Sbjct: 63  DLVVISAQDIDNMRADGINLNEIERIGMEKILSNLN--PEKAIVDAVDIKAERFQNKLAN 120

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----TAK 183
           D      A  K D   + ++AASIIAK  RD  +   +K Y   G     GYP    T K
Sbjct: 121 DTGVNVVAEHKADDNYIEVSAASIIAKQERDAHIAEINKDYIKMG-GIGSGYPSDPITKK 179

Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207
                         R ++  +  +
Sbjct: 180 FLTNFTYDEMPDFVRKSWATVEKM 203


>gi|15679041|ref|NP_276158.1| ribonuclease HII [Methanothermobacter thermautotrophicus str. Delta
           H]
 gi|7227913|sp|O27102|RNH2_METTH RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|2622126|gb|AAB85519.1| ribonuclease HII [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 206

 Score =  127 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 26/204 (12%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           V GIDE GRG + GP+VVA +++           G+ DSKK++ ++R  L  KI   A +
Sbjct: 3   VLGIDEAGRGPVIGPLVVAGVMIPERKFSILRKMGVKDSKKLTPERRRFLARKIRRIARV 62

Query: 82  SISSASHQYIDKH-----NIHKATLDAIYHAVENLQVIPRSALIDGRSI-PEDL------ 129
                S   ID+      N+++    AI   +   +  P   +ID   + PE L      
Sbjct: 63  FTVKISASDIDRMRERGFNLNEIEKIAIKRIIP--EAQPDRVIIDSVDVKPERLEEEIRS 120

Query: 130 ---PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQ 185
                +  A    D+    +AAASIIAKV RD  +    KK    G D   GYP+  + +
Sbjct: 121 HFGEIEVTAEHGADTRYYPVAAASIIAKVERDLEIESIQKKNRKLG-DIGSGYPSDPRTR 179

Query: 186 QVIKEK---GPSCIHRLTFRPLRN 206
           + ++           R ++  ++ 
Sbjct: 180 EFLESFTYDELPDFVRRSWATVQK 203


>gi|118431079|ref|NP_147280.2| ribonuclease HII [Aeropyrum pernix K1]
 gi|150421651|sp|Q9YET5|RNH2_AERPE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|116062405|dbj|BAA79461.2| ribonuclease HII [Aeropyrum pernix K1]
          Length = 225

 Score =  127 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 96/209 (45%), Gaps = 27/209 (12%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS 78
           M  V G+DE GRG+L G +VVA   ++   +      G+ DSK++S   R ELY +I+  
Sbjct: 1   MGIVVGVDEAGRGSLVGDLVVAGFAVEEARLGELQSLGVRDSKQLSPAARVELYREISGV 60

Query: 79  AIISISSASHQYIDKHNIH----KATLDAIYHAVENLQVIPRSALIDGRSIPEDL----- 129
              ++ +     ID  NI+    KA  + +   V  L V P   ++D     + L     
Sbjct: 61  GFFTVEAIRPWEIDGENINILVTKAVEEIVSRIVSYLGVHPSLVVVDKYGDVQGLRLALT 120

Query: 130 -----PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AK 183
                P       K DS    ++AASI+AKV RD  +++  + Y         GYP+  +
Sbjct: 121 RLGIEPRSILVEEKADSRYPVVSAASIVAKVVRDARLQVLRRMYGV----RGSGYPSDPE 176

Query: 184 HQQVIKE---KGPSC-IHRLTFRPLRNLS 208
            ++ ++E   +G +  + R T+  +R L 
Sbjct: 177 TREWVREVFARGEAPRVIRYTWSTVRKLG 205


>gi|224001680|ref|XP_002290512.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973934|gb|EED92264.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 249

 Score =  127 bits (320), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 58/218 (26%), Positives = 88/218 (40%), Gaps = 37/218 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKREELYEKITSSAIIS- 82
           + GIDE GRG + GP+  AA    P   +IP G NDSK++S +KR  L+++I  S  I  
Sbjct: 1   ILGIDEAGRGPVLGPMTYAAAYWSPTATDIPEGFNDSKQLSAEKRASLFDEIKRSDSIGF 60

Query: 83  ---ISSASHQYIDKHNIHKATLDAIYH--------AVENLQVIPRSALIDGRSIPEDLPC 131
              +  AS    +        L+A+ H        AV +  V   +A ID   +P+    
Sbjct: 61  VLRVLHASEISRNMLRSEPYNLNAMSHDAAMEMIWAVLDSGVKIETAYIDTVGMPDAYRS 120

Query: 132 QAFAVI-----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY----GFDSH 176
           +   V            K D+     +AAS++AK +RD L+         Y    G +  
Sbjct: 121 KLERVFQGHNIEFIVEKKADAKYAPCSAASVVAKESRDTLIANWKWTETSYEPKDGRNFG 180

Query: 177 VGYPTAKHQQVIKE--------KGPSCIHRLTFRPLRN 206
            GYP+        E         G     R ++ P + 
Sbjct: 181 SGYPSDPKCTTWMENNLNVDAPFGYPDFVRFSWGPAKK 218


>gi|328774049|gb|EGF84086.1| hypothetical protein BATDEDRAFT_8789 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 290

 Score =  127 bits (320), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 52/215 (24%), Positives = 84/215 (39%), Gaps = 36/215 (16%)

Query: 25  PVAGIDEVGRGALAGPVVVAAI---ILDPNNIP-FGINDSKKISHKKREELYEKITSSAI 80
            + G+DE GRG + GP+V A     I   + +   G  DSK ++  +R++L+  I   + 
Sbjct: 62  CILGVDEAGRGPVLGPMVYAVCYTLISHQDKLKDIGFADSKVLNETQRDKLFATIEKQSE 121

Query: 81  ---ISISSASHQYIDKHNIHKATLDAIYHA----------VENLQVIPRSALIDGRSIPE 127
               + +  S Q I +  + +A  +    A          V +  V  +   +D    PE
Sbjct: 122 WIGWAATVCSPQDISESMLRRAKYNLNALAHDTTINLIQSVLDQGVNIQEVYVDTVGSPE 181

Query: 128 --------DLPCQAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---D 174
                     P     V+  K DS+   ++AASI AKVTRD ++       P        
Sbjct: 182 SYQAKLAKRFPKIGKIVVSKKADSLFPIVSAASICAKVTRDAILCNWEFVEPGIDSTQRA 241

Query: 175 SHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203
              GYP   K    +K+      G   I R ++  
Sbjct: 242 FGSGYPADPKTVAWLKKHLDPVFGFPRIVRFSWST 276


>gi|329571610|gb|EGG53291.1| ribonuclease HII [Enterococcus faecalis TX1467]
          Length = 103

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/104 (44%), Positives = 68/104 (65%), Gaps = 2/104 (1%)

Query: 104 IYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163
           +  A+++L   P   LID   +  D+P    ++IKGD+ S+SIAAASIIAKVTRDRLM  
Sbjct: 1   MKMAIDDLAFAPDYLLIDAMQL--DVPQPQESLIKGDARSISIAAASIIAKVTRDRLMEE 58

Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
             + YP YGF ++ GY T +H   +++ G + IHR TF P++++
Sbjct: 59  YDELYPGYGFKNNAGYGTKEHLLGLEKYGVTPIHRRTFAPIKDM 102


>gi|292656107|ref|YP_003536004.1| ribonuclease H II [Haloferax volcanii DS2]
 gi|291372875|gb|ADE05102.1| ribonuclease H II [Haloferax volcanii DS2]
          Length = 215

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 28/205 (13%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86
            G+DE G+G + GP+V AA+  DP+ +P GI DSK+++ ++REEL  ++     IS+  A
Sbjct: 3   IGVDEAGKGPVLGPMVAAAVRGDPDALPDGIADSKRLAPERREELAAELRERDDISVGVA 62

Query: 87  --SHQYID--KHNIHKATLDAIYHAVENLQVIPRSALID---------GRSIPEDL---- 129
               + ID  + +++  T+ A   A   + V     + D         GR + E L    
Sbjct: 63  FVEPETIDDPETDMNLLTVRAQVEAAAEVAVDADELVCDAGDVSESRFGRRVREGLAEAG 122

Query: 130 -PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA-----K 183
                 A  + D     + AASI+AKV RDR +     +Y + G     GYP+       
Sbjct: 123 VSVAVRAQHRADDEHAIVGAASIVAKVERDRRVEAIADEYGEVG----SGYPSDGTTREF 178

Query: 184 HQQVIKEKGPSC-IHRLTFRPLRNL 207
            ++ +++ G      R ++    +L
Sbjct: 179 LREYVRDHGILPDCARKSWSTCADL 203


>gi|261402294|ref|YP_003246518.1| ribonuclease HII [Methanocaldococcus vulcanius M7]
 gi|261369287|gb|ACX72036.1| ribonuclease HII [Methanocaldococcus vulcanius M7]
          Length = 233

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 93/221 (42%), Gaps = 42/221 (19%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI 80
            + G+DE GRG + GP+VV A  ++ +        G+ DSK +S  KR +L +++     
Sbjct: 4   IIVGVDEAGRGPVLGPMVVCAFAIEKDREDLLRDLGVKDSKLLSKSKRSQLKKQLERIGY 63

Query: 81  ISISSASHQYI----DKHNIHKATLDAIYHAV------ENLQVIPRSALIDG-------- 122
           +     +   I    +K N+++  ++A    +       NL+       +D         
Sbjct: 64  VKKKILTANEINTLMNKINLNEIEINAFSEVIMGLINDLNLKDEYLEIYVDACSTNAKKF 123

Query: 123 -----RSIPE-----DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172
                  I +     +L  +  A  K D     +++ASIIAK  RD ++    KKY + G
Sbjct: 124 ENELKNRIKDIENQKNLKIKVIAEHKADLKYPIVSSASIIAKADRDEIIEQYKKKYGEIG 183

Query: 173 FDSHVGYPT-AKHQQVI----KEKGPSC-IHRLTFRPLRNL 207
                GYP+  K  + +    +E G    I R+ ++  + +
Sbjct: 184 ----SGYPSDPKTIKFLEKYFEEYGSLPNIARVHWKTCKRI 220


>gi|257052068|ref|YP_003129901.1| ribonuclease HII [Halorhabdus utahensis DSM 12940]
 gi|256690831|gb|ACV11168.1| ribonuclease HII [Halorhabdus utahensis DSM 12940]
          Length = 234

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 24/201 (11%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85
           AG+DE G+G + G +  A ++ DP ++P  ++DSK +S ++REEL   I   A  +++S 
Sbjct: 25  AGVDEAGKGPVLGSMFAACVVADPADLPDDVDDSKDLSAERREELATVIRDRAHAVAVSE 84

Query: 86  ASHQYIDKHNIHKATLDAIYH-------AVENLQVIPRSALIDGRSIPEDLPCQA----- 133
                ID       TL  + H       A + L     +   +       +  +      
Sbjct: 85  IPVARIDDTETDMNTLTVVAHAEALEPVASDGLATYLDAGDTNAVRFERRVADRIEADLD 144

Query: 134 -FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----TAKHQQ-V 187
             A    D+    + AASIIAKV RD  +     +Y D G     GYP    T    +  
Sbjct: 145 LRAEHGADAAYPIVGAASIIAKVERDAHVAELAAEYGDLG----SGYPGDSTTRDFLEDY 200

Query: 188 IKEKGPSCI-HRLTFRPLRNL 207
           I E G      R +++  R++
Sbjct: 201 IAEHGELPACARESWQTSRDV 221


>gi|147920602|ref|YP_685601.1| ribonuclease H (RNase H) [uncultured methanogenic archaeon RC-I]
 gi|121688011|sp|Q0W5R8|RNH2_UNCMA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|110620997|emb|CAJ36275.1| ribonuclease H (RNase H) [uncultured methanogenic archaeon RC-I]
          Length = 224

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/210 (27%), Positives = 88/210 (41%), Gaps = 27/210 (12%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYE 73
           + +K    + GIDE GRG + GP+VV  II++  ++P     G+ DSKK+S KKREE   
Sbjct: 1   MAKKRTSTIMGIDEAGRGPVIGPLVVCGIIVEEKDLPAIEAMGLKDSKKLSAKKREEFAA 60

Query: 74  KITSSAIISISSASHQYIDKHNIHKATLD-AIYHAVENL--QVIPRSALIDGRSIP---- 126
            + +     +S    Q ID     +  L+    +    L     P  A +D   +     
Sbjct: 61  ALKNKYKYELSVLPPQEIDARFESEDNLNRLEVNCFAGLIRSAKPTIAYLDACDVNAERF 120

Query: 127 -------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
                   D   +  +  + DS    ++AASIIAKV RD L+R   +K  +   D   GY
Sbjct: 121 GINIKKCLDFELEIVSAHEADSKYPIVSAASIIAKVHRDSLIREISEKMGE---DVGSGY 177

Query: 180 PT-AKHQQVIKEK-----GPSCIHRLTFRP 203
           P        +K             R +++ 
Sbjct: 178 PADPVTISFLKNYYMKHKCLPDCARKSWKT 207


>gi|294891483|ref|XP_002773596.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC
           50983]
 gi|239878780|gb|EER05412.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC
           50983]
          Length = 339

 Score =  125 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 92/220 (41%), Gaps = 43/220 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI--- 80
           GIDE GRG + GP+V  A I D          G NDSK+++  KR EL+E I + A+   
Sbjct: 57  GIDEAGRGPVFGPMVYGAAISDIRKSDALGKMGFNDSKQLTEAKRSELFEDIHNEALKDD 116

Query: 81  ----ISISSASHQYI-------DKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIP 126
                ++   +   I       +K N+++ + +     +E+     +  +   +D    P
Sbjct: 117 GVLGFAVHVLTAHEISTKMLRRNKVNLNRISHETAIGLIEHALSEGINVKEVYVDTVGDP 176

Query: 127 EDLPCQAFAVI------------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174
           E    +  ++             K D+I    +AASI AKV RDRL+      YP+ G  
Sbjct: 177 ERYQNKLSSIFKRRGVDTIVVCKKADAIYPICSAASICAKVIRDRLVEEDISYYPEVG-- 234

Query: 175 SHVGYP-TAKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208
              GYP  A+  + +++            R ++  +  + 
Sbjct: 235 --SGYPGDAQTVEWLEKVVDPVFLFPRQIRFSWSTIEEIE 272


>gi|224097610|ref|XP_002311009.1| predicted protein [Populus trichocarpa]
 gi|222850829|gb|EEE88376.1| predicted protein [Populus trichocarpa]
          Length = 297

 Score =  125 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 91/220 (41%), Gaps = 37/220 (16%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI 80
            + GIDE GRG + GP+V   +    +           DSK +  +KREEL+EK+ ++ +
Sbjct: 15  CIMGIDEAGRGPVLGPMVYGCLYCARSYEKTLSTLKFADSKTLKEEKREELFEKLKANEL 74

Query: 81  ISIS--SASHQYIDKHNIHKATLDAIYHA----------VENLQVIPRSALIDGRSIPED 128
           I  +      + +    + K  ++    +          V N+ V+     +D    PE 
Sbjct: 75  IGWAVDVIDPRELSAKMLKKIKINLNEISHDSASGLVTRVLNMGVLLTDVYVDTVGDPEK 134

Query: 129 LPCQ-------AFAVI--KGDSISLSIAAASIIAKVTRDRLMRI--AHKKYPDYGFDSHV 177
              +          V+  K DS+   ++ ASI+AKVTRDR +R     +   +   +   
Sbjct: 135 YRIKLSERFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALRDWVLDETAENMTRNFGS 194

Query: 178 GYP-TAKHQQVIKEK-----GPSCIHRLTFRPL----RNL 207
           GYP   + +  +++      G   + R ++       +N+
Sbjct: 195 GYPGDPETKSWLEKHQHSVFGFPSLVRFSWGTCTSYSKNM 234


>gi|123502031|ref|XP_001328204.1| ribonuclease HII family protein [Trichomonas vaginalis G3]
 gi|121911144|gb|EAY15981.1| ribonuclease HII family protein [Trichomonas vaginalis G3]
          Length = 269

 Score =  125 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 88/219 (40%), Gaps = 33/219 (15%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSA 79
           K +    GIDE GRG   GP+V +  I       P  ++DSKK++ ++REE++++I    
Sbjct: 16  KGIELEMGIDEAGRGPALGPMVYSGAIAPNKYEWPKDVDDSKKLTAEQREEIFDEIKKLP 75

Query: 80  I-ISISSASHQYID-------------KHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
           +  ++   S + I                  H A  D +  A  +  +  ++  +D   I
Sbjct: 76  VGFAVRVISAEEISAKQTALVNPPISLNTVSHHAARDLV-QAFLDKGLNIKALYVDTVGI 134

Query: 126 PEDL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF--D 174
            E             +     K D+    + AASI AKVTRDRL+     + P      D
Sbjct: 135 AESYQDWLQDKFPNIKVTVRAKADATYKVVGAASICAKVTRDRLLADFKFEEPGLEISHD 194

Query: 175 SHVGYPTAKHQQVIKE------KGPSCIHRLTFRPLRNL 207
              GYP+        E       G   + R  ++P++ +
Sbjct: 195 WGSGYPSDPKTSNWLETNFDPVFGYPSVARFDWKPIKMM 233


>gi|257387378|ref|YP_003177151.1| ribonuclease HII [Halomicrobium mukohataei DSM 12286]
 gi|257169685|gb|ACV47444.1| ribonuclease HII [Halomicrobium mukohataei DSM 12286]
          Length = 210

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 81/195 (41%), Gaps = 23/195 (11%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87
           G+DE G+G + G +  AA+  DP ++P G+ DSK I  ++RE L E I S A + ++  +
Sbjct: 4   GVDEAGKGPVLGSMFAAAVRCDPGDLPDGVGDSKGIPDERRERLAEAIRSVAAVGLAEIT 63

Query: 88  HQYIDKHNIHKATLDAIYH-------AVENLQVIPRSALIDGRSIPEDLPCQAFAVI--- 137
            + ID       TL    H       A + L  +  +   D       +  +  + I   
Sbjct: 64  PERIDDPETDMNTLTVAAHAEALSAVATDGLSGLVDAGDTDAERFGRRVADRVDSEIDLG 123

Query: 138 ---KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIK---- 189
                D     + AASI+AK  R+  +     ++   G     GYP+    ++ +K    
Sbjct: 124 SAHGADETDPLVGAASIVAKSAREAHVAALADEFGAVG----SGYPSDPATREFLKRYVD 179

Query: 190 EKGPSC-IHRLTFRP 203
           E G      R ++  
Sbjct: 180 EHGALPDCARTSWST 194


>gi|161528901|ref|YP_001582727.1| ribonuclease HII [Nitrosopumilus maritimus SCM1]
 gi|160340202|gb|ABX13289.1| ribonuclease HII [Nitrosopumilus maritimus SCM1]
          Length = 205

 Score =  124 bits (313), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 98/206 (47%), Gaps = 30/206 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-SAI 80
           + G+D+ GRG++ GP+V++ I ++  N+      G+ DSKK+S K RE LY++I      
Sbjct: 3   ICGVDDAGRGSMLGPLVISGISINKKNLRKLSSLGVKDSKKLSPKSRELLYKQIIELVDD 62

Query: 81  ISISSASHQYIDKHNIHK--ATLDAIYHAVENLQVIPRSALIDGRSIPEDL--------- 129
             I+  + + ID          L+A Y A   L++ P ++ +D   +             
Sbjct: 63  YYIAKITPRSIDASVKKHGLNELEAKYMAKVVLKLDPDTSYVDSCDVNPKRFGKEISKLS 122

Query: 130 -PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA-KHQQV 187
              +  +    DS  + ++AASIIAKVTRDR +    K Y     D   GYP+  K  + 
Sbjct: 123 DNHKIKSYHHADSRFVVVSAASIIAKVTRDRAIEKLRKTY-----DLGSGYPSDSKTVKF 177

Query: 188 IKEK------GPSCIHRLTFRPLRNL 207
           +          P+ + R +++P++ +
Sbjct: 178 VTRYYKTSKSLPTFV-RKSWKPVQKI 202


>gi|291333356|gb|ADD93062.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S05-C10]
          Length = 830

 Score =  124 bits (313), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 87/185 (47%), Gaps = 28/185 (15%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSS 78
           M  + G DE GRG + GP+VVAA+ +   +    I  G++DSK +S KKREEL + I   
Sbjct: 1   MLMIVGADEAGRGPVLGPLVVAAVAIPATDLQRLIDLGVDDSKALSPKKREELNQIIHQE 60

Query: 79  AII--SISSASHQYID----KHNIHKATLDAIYHAVENLQV-IPRSALIDGRSIPEDLPC 131
                SI   S + ID    K  ++   +D    A+++L+V      ++D     E    
Sbjct: 61  PTWQVSIIECSPERIDVTMEKKTLNDLEVDLFGEAIDSLEVERIEELILDACDTNEARFG 120

Query: 132 Q--------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
           +                +    D+ +  + AASI+AKV RD++++   K   D GF+   
Sbjct: 121 RNVASKISSGKIVETVISKHGADAENPVVGAASIVAKVHRDKVIQSIAK---DRGFNVGS 177

Query: 178 GYPTA 182
           GYP+ 
Sbjct: 178 GYPSD 182


>gi|322372194|ref|ZP_08046735.1| ribonuclease HII [Haladaptatus paucihalophilus DX253]
 gi|320548203|gb|EFW89876.1| ribonuclease HII [Haladaptatus paucihalophilus DX253]
          Length = 212

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 87/201 (43%), Gaps = 26/201 (12%)

Query: 28  GIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKIT--SSAIISIS 84
           G+DE GRG + G +  AA+ I DP+++P GI+DSK +S ++REEL   +    +  + ++
Sbjct: 3   GVDEAGRGPVLGSMFAAAVAIDDPDDLPDGIDDSKNLSPERREELAAALRADEAVAVGVA 62

Query: 85  SASHQYIDKHNIHKATLD--AIYHAVENLQVIPRSALIDGRSIPEDLPCQ---------- 132
             +   ID       TL   A   A+  +       ++D     E    +          
Sbjct: 63  EITTTRIDDPETDMNTLTVAAHGEAISRIVSGGERGIVDACDTSESRFARRVAAAVGPEI 122

Query: 133 -AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH-----QQ 186
              A    D     + AASI+AKV RD  +    +++   G     GYP+  +     ++
Sbjct: 123 TVEAEHGADETHAIVGAASIVAKVERDAHVARLAEQHGGVG----SGYPSDPNTREFLRE 178

Query: 187 VIKEKGPSCI-HRLTFRPLRN 206
            ++  G      R +++  ++
Sbjct: 179 YVEAHGELPECARASWQTSKD 199


>gi|76801839|ref|YP_326847.1| ribonuclease HII [Natronomonas pharaonis DSM 2160]
 gi|115305552|sp|Q3IRF6|RNH2_NATPD RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|76557704|emb|CAI49287.1| ribonuclease H II [Natronomonas pharaonis DSM 2160]
          Length = 212

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 85/204 (41%), Gaps = 23/204 (11%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82
           M P+ G+DE G+G + G + VAA+      +P GI+DSK+++  +RE L +++  +  I 
Sbjct: 1   MTPLVGVDEAGKGPVVGSMFVAAVRAPTEALPDGIDDSKRLTDDRREALADRLRDADRID 60

Query: 83  ISSAS--HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED-----------L 129
           ++        ID  N++  T+ A   A++ +     + L D   +              L
Sbjct: 61  VAVVECQPADIDDANMNDLTVAAHAAALDGVAASGETVLCDAGDVDAGRFADRVAAAATL 120

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
                A    D     + AASIIAK  R+R +    ++Y   G     GYP+    +   
Sbjct: 121 DVSVAAEHGADGSDDLVGAASIIAKSARERHVEQLSEQYGAVG----SGYPSDPTTKAFL 176

Query: 190 EK------GPSCIHRLTFRPLRNL 207
            +      G     R ++     +
Sbjct: 177 REAFEQEGGFPPCVRTSWSTCERI 200


>gi|156938224|ref|YP_001436020.1| RNase HII [Ignicoccus hospitalis KIN4/I]
 gi|156567208|gb|ABU82613.1| RNase HII [Ignicoccus hospitalis KIN4/I]
          Length = 215

 Score =  124 bits (312), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 20/199 (10%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
             VAGIDE GRG + G + VA + ++ + +      G+ +SK ++  KR   Y  I  +A
Sbjct: 4   MIVAGIDEAGRGPVIGSMFVALVAIEQDQLEKLVSLGLKESKMLTPNKRRYFYNLIMKTA 63

Query: 80  -IISISSASHQYIDKHNIHKATLDAIYH----AVENLQVIPRSALIDGRSIPE-----DL 129
            ++ I     + IDK N+ + T++ +      A+  +++      I G    +     ++
Sbjct: 64  KLVLIKEVKAEEIDKRNLSELTIEVMKELLETALNKVKIDVVCVDIVGNGAKQRRALGEV 123

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVI 188
                 + KGD+   + AAASI+AK  R+R +     +Y D+G     GYP+  K  + +
Sbjct: 124 FPDVIVMKKGDASCPAAAAASIVAKEARERHVSQLRARYGDFG----SGYPSDPKTLRWL 179

Query: 189 K-EKGPSCIHRLTFRPLRN 206
              +    I R  ++ +R 
Sbjct: 180 SVTRPLPPIVRKKWKTIRR 198


>gi|288561094|ref|YP_003424580.1| ribonuclease HII RnhB [Methanobrevibacter ruminantium M1]
 gi|288543804|gb|ADC47688.1| ribonuclease HII RnhB [Methanobrevibacter ruminantium M1]
          Length = 219

 Score =  124 bits (312), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 87/207 (42%), Gaps = 29/207 (14%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G+DE GRG + GP+VVA I++           G+ DSK+I+ K+R  LY K+T       
Sbjct: 5   GLDEAGRGPVLGPMVVAGIVIPEKKEKIIERMGVKDSKRITPKRRAVLYRKLTRMFDYET 64

Query: 84  SSASHQYIDKH-----NIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--------- 129
              S + ID       N+++    A+   +  L+    + +ID   I E           
Sbjct: 65  VEISAKDIDLLRAKGVNLNQIEKLAMMRIIAKLK--ADTIIIDSLDIKEGRLEEEMQNFV 122

Query: 130 --PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY---PDYGFDSHVGYPT-AK 183
               +  A  K D   + + AASIIAK  RD ++   +K+Y            GYP+  K
Sbjct: 123 GEGSKVIAEHKADDKYIVVGAASIIAKTKRDEIINQINKEYIRSTGNKDGIGSGYPSDPK 182

Query: 184 HQQVIKEKGP---SCIHRLTFRPLRNL 207
            +  +K           R ++  ++ +
Sbjct: 183 TKNFLKNYKYDEMPDFVRRSWGTVQRI 209


>gi|297571158|ref|YP_003696932.1| ribonuclease H [Arcanobacterium haemolyticum DSM 20595]
 gi|296931505|gb|ADH92313.1| Ribonuclease H [Arcanobacterium haemolyticum DSM 20595]
          Length = 224

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 65/211 (30%), Positives = 104/211 (49%), Gaps = 18/211 (8%)

Query: 10  PHFELEAMVREK--NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI---PFGINDSKKIS 64
           P   +E  +  +      +AG+DEVGRG++AGP  V   +++ + +   P G+ DSK IS
Sbjct: 6   PDRTVERELLAQLPAGTYLAGVDEVGRGSIAGPASVGIALVNTDTVDEFPVGLRDSKMIS 65

Query: 65  HKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENL-QVIPRSALIDG 122
              RE L E +    +  ++  AS Q +++  I  A   A   A+E L        L+DG
Sbjct: 66  AHVRESLVEPVHEWVSAYAVGHASPQDVNEAGILGALRIAAARALEQLDGFEIAGVLLDG 125

Query: 123 ----------RSIPEDLPC-QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171
                           LP       +KGD+    +AAAS++AKV RDR+M  + + +P Y
Sbjct: 126 SHDWWSSDGLFDAGATLPVLPVRMEVKGDARCAVVAAASVLAKVERDRIMVESAEAFPGY 185

Query: 172 GFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           GF+ + GY +A+H   ++  G S  HR  ++
Sbjct: 186 GFERNKGYASAEHIHGLETLGASAFHRTAWK 216


>gi|331234733|ref|XP_003330025.1| ribonuclease HI large subunit [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309309015|gb|EFP85606.1| ribonuclease HI large subunit [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 349

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/261 (23%), Positives = 100/261 (38%), Gaps = 65/261 (24%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGIND 59
           S  +R     E    +++ W + GIDE GRG + GP+V  A            +  G  D
Sbjct: 49  STSDRKDITEEEEQLKRDNW-IMGIDEAGRGPVLGPMVYGAAFCTQAFAEDKLLDLGFAD 107

Query: 60  SKKISHKKREELYEKI---------TSSAIISISSASHQYIDKHN-----------IHKA 99
           SK ++H++REEL E I               ++   +   I +                A
Sbjct: 108 SKTLTHRRREELLEMIVHPPADQPLNERVEWNVKVLTPADISQGMNRRSPYNLNAQAFDA 167

Query: 100 TLDAIYHAVENLQVIPRSALID--------GRSIPEDLPCQAFAVI-KGDSISLSIAAAS 150
           T + I HA++ LQ   +   +D           + +  P   F V  K DSI   + AAS
Sbjct: 168 TCEIIQHALD-LQYNLQHIYVDTLGPPKTHQMKLEQSFPGIKFTVCSKADSIYPIVGAAS 226

Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSH------------------VGYPT-AKHQQVIKE- 190
           ++AKVTRD ++   H  +P+    +H                   GYP+     + + E 
Sbjct: 227 VVAKVTRDAIVS--HWIHPE---STHPQKRKSSQEDEDATTSLGSGYPSDPNTVKWLSEN 281

Query: 191 ----KGPSCIHRLTFRPLRNL 207
                G   + R ++  ++ L
Sbjct: 282 FNTIFGFGQLVRFSWGTVKTL 302


>gi|303243761|ref|ZP_07330102.1| ribonuclease HII [Methanothermococcus okinawensis IH1]
 gi|302486003|gb|EFL48926.1| ribonuclease HII [Methanothermococcus okinawensis IH1]
          Length = 305

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 94/246 (38%), Gaps = 70/246 (28%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G+DE GRG + GP+V+A +     ++P     G+ DSKK+S  KREELY+ I ++  +  
Sbjct: 42  GLDEAGRGPVLGPMVIALVKATEKDLPKFDELGLKDSKKLSRHKREELYKIIMNNYEVKS 101

Query: 84  SSASHQYIDKH----NIHKATLDAIYHAVENL---------------------------- 111
                + IDK     N++K  +      + ++                            
Sbjct: 102 IILEAKDIDKMMEKTNLNKIEIMVFSKLINSVLKEEYKDYKNKNHKLNNKLNNNEVNDKI 161

Query: 112 ----------QVIPRSALIDG---------RSIPEDL-----PCQAFAVIKGDSISLSIA 147
                             ID            I   L       +  A  K D     ++
Sbjct: 162 NSNKVNNNKINNKKIDIYIDACSSNEKAFSNQIKSKLVVYNDNIKIIAEHKADDKYKIVS 221

Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH-----QQVIKEKGPSC-IHRLTF 201
           AASI+AKV RD+++    + Y + G     GYP+ K      +  +KE G    I R ++
Sbjct: 222 AASIVAKVIRDKIIDNYKEIYGEIG----SGYPSDKTTINYLKNYVKEHGTLPEIARKSW 277

Query: 202 RPLRNL 207
           +  +N+
Sbjct: 278 KTSKNI 283


>gi|282165631|ref|YP_003358016.1| ribonuclease HII [Methanocella paludicola SANAE]
 gi|282157945|dbj|BAI63033.1| ribonuclease HII [Methanocella paludicola SANAE]
          Length = 217

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 86/204 (42%), Gaps = 31/204 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           +AGIDE GRG + GP+VV  + +    +      G+ DSK ++ KKREE   KI      
Sbjct: 2   IAGIDEAGRGPVIGPMVVCGVSVSEKKLRKIKSMGLKDSKLLTPKKREEFAVKIKDVCEY 61

Query: 82  SISSASHQYI-----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP---------- 126
            +     + I     D+ N+++  ++   + ++ L+  P +A +D   +           
Sbjct: 62  ELVVVGPERIDSRANDELNLNELEVECFSNILKALR--PATAYVDACDVNAERFGINVKK 119

Query: 127 -EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----T 181
             D   +  +    D     ++AASI+AKV RD L++         G +   GY     T
Sbjct: 120 GLDFEVEVISRHNADRDYPVVSAASILAKVHRDALIKEICDS---IGENVGSGYSHDQVT 176

Query: 182 AKHQQVIKEKGPS--CIHRLTFRP 203
            +  +   +K        R +++ 
Sbjct: 177 IEFLKGYYKKNKCMPPFARKSWKT 200


>gi|196017000|ref|XP_002118348.1| hypothetical protein TRIADDRAFT_51212 [Trichoplax adhaerens]
 gi|190579064|gb|EDV19170.1| hypothetical protein TRIADDRAFT_51212 [Trichoplax adhaerens]
          Length = 299

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 88/216 (40%), Gaps = 39/216 (18%)

Query: 28  GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAIIS- 82
           GIDE GRG + G +V  A              G+ DSK ++   R+EL++KI S   +  
Sbjct: 32  GIDEAGRGPVLGAMVYGACYYPLSQSEKVKELGVADSKVLTEDMRDELFQKINSDDSVGW 91

Query: 83  -ISSASHQYIDKHNI-----------HKATLDAIYHAVENLQVIPRSALIDGRSIPEDL- 129
            +   S   I    +           H A ++ I  +++   V  +   +D   + E+  
Sbjct: 92  LVEIISPSDISTKMLARTKYSLNAVSHDAAINLIRQSIQK-GVQVKEIYVDTVGVAENYQ 150

Query: 130 --------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD---YG-FDSHV 177
                           K D++   ++AASIIAKVTRD+++     K+P+   Y   D   
Sbjct: 151 NKLSELFPDITIKVTPKADALFPCVSAASIIAKVTRDKVLSNW--KFPEDESYNSSDYGC 208

Query: 178 GYPT-AKHQQVI-----KEKGPSCIHRLTFRPLRNL 207
           GYP+    Q+ +     K  G     R ++   + +
Sbjct: 209 GYPSDPATQKWLNSNLDKVFGYPQFVRFSWSTCQKI 244


>gi|311248923|ref|XP_003123380.1| PREDICTED: ribonuclease H2 subunit A-like [Sus scrofa]
          Length = 301

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 85/217 (39%), Gaps = 34/217 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS--- 77
            V G+DE GRG + GP+V A          +     + DSK +S  +R+ L+ K+     
Sbjct: 29  CVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFAKMEEDGD 88

Query: 78  ---SA-------IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
               A       +IS S       + +++   T   +     +  V      +D   +PE
Sbjct: 89  FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGLPE 148

Query: 128 DL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSH 176
                        +     K D++   ++AASI AKV RD+ +R     +K  D   D  
Sbjct: 149 TYQERLQQRFPDIEVTVKAKADALYPVVSAASICAKVARDQAVRNWQFVEKLQDLDTDYG 208

Query: 177 VGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207
            GYP   K +  +++      G     R ++R  +++
Sbjct: 209 SGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSI 245


>gi|221132373|ref|XP_002166509.1| PREDICTED: similar to ribonuclease H2, large subunit [Hydra
           magnipapillata]
          Length = 300

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/212 (25%), Positives = 86/212 (40%), Gaps = 32/212 (15%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI--- 80
           GIDE GRG + GP+V +      + I      G  DSK ++ +KR+ L   I ++     
Sbjct: 32  GIDEAGRGPVLGPMVYSVCYCPISMIKKLSDLGFADSKTLTEEKRDNLLSVIENNCDFIG 91

Query: 81  ISISSASHQYIDKHNI--HKATLDAIYH------------AVENLQVIPRSALIDG---- 122
            +I   S   I    +  +K TL+ I H            A  N+  +    + D     
Sbjct: 92  WAIKIISPTEISNEMLRRYKVTLNEISHGAAIELTRKTINAGANITEMYVDTVGDALKYQ 151

Query: 123 RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
             + E     +  V  K D++   ++AASI AKV RDR ++       D   D   GYP 
Sbjct: 152 NKLSEVFDGISVKVTPKADALFPIVSAASICAKVARDRCIQNWQFPEGDIKEDYGSGYPA 211

Query: 182 -AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207
             K +Q +K+      G     R ++    N+
Sbjct: 212 DPKTKQWLKDVVDPVFGFPQFVRFSWSTCANI 243


>gi|150399435|ref|YP_001323202.1| ribonuclease HII [Methanococcus vannielii SB]
 gi|189043627|sp|A6UQ18|RNH2_METVS RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|150012138|gb|ABR54590.1| ribonuclease HII [Methanococcus vannielii SB]
          Length = 244

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/214 (24%), Positives = 87/214 (40%), Gaps = 32/214 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
           N   + G+DE GRG + GP+V++ + +   ++       + DSK+++ K+REE Y  I  
Sbjct: 21  NEKIILGLDEAGRGPVLGPMVISVVKVTEKDLDKINSLDLKDSKQLTKKRREEYYNIINE 80

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP------RSALIDGRSIPE---- 127
              +     + + ID++            A   L              ID  S  E    
Sbjct: 81  CFEVQKIVLAPEKIDEYMKTSNLNKIELSAFSKLSNHFLKEYENVKIFIDACSSSEQSFL 140

Query: 128 --------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
                   +   +  A  K D     ++AASIIAKVTRD ++    +++ D G     GY
Sbjct: 141 NQFKAKLINKKVEIIAEHKADEKYKIVSAASIIAKVTRDNIIESYKEEFGDIG----SGY 196

Query: 180 P----TAKHQQV-IKEKGPSC-IHRLTFRPLRNL 207
           P    T +  +  +KE      I R ++   + L
Sbjct: 197 PGDPKTKEFLKRFVKEHKKLPKIARGSWATSKKL 230


>gi|34329831|gb|AAQ64005.1| ribonuclease H2 [Homo sapiens]
          Length = 299

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 83/212 (39%), Gaps = 33/212 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80
            V G+DE GRG + GP+V A          +     + DSK +   +RE L+ K+  +  
Sbjct: 29  CVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDF 88

Query: 81  ISIS--SASHQYID-------KHNIHKATLD---AIYHAVENLQVIPRSALIDGRSIPED 128
           +  +    S   I        K+N++  + D    +     +  V      +D   +PE 
Sbjct: 89  VGWALDVLSPNLISTSMLGWVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPET 148

Query: 129 L---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177
                       +     K D++   ++AASI AKV RD+ ++     +K  D   D   
Sbjct: 149 YQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGS 208

Query: 178 GYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203
           GYP   K +  +KE      G     R ++R 
Sbjct: 209 GYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRT 240


>gi|3334761|emb|CAB09725.1| ribonuclease HI large subunit [Homo sapiens]
          Length = 299

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 83/212 (39%), Gaps = 33/212 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80
            V G+DE GRG + GP+V A          +     + DSK +   +RE L+ K+  +  
Sbjct: 29  CVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDF 88

Query: 81  ISIS--SASHQYID-------KHNIHKATLD---AIYHAVENLQVIPRSALIDGRSIPED 128
           +  +    S   I        K+N++  + D    +     +  V      +D   +PE 
Sbjct: 89  VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPET 148

Query: 129 L---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177
                       +     K D++   ++AASI AKV RD+ ++     +K  D   D   
Sbjct: 149 YQAQLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGS 208

Query: 178 GYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203
           GYP   K +  +KE      G     R ++R 
Sbjct: 209 GYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRT 240


>gi|18312482|ref|NP_559149.1| ribonuclease HII [Pyrobaculum aerophilum str. IM2]
 gi|74564756|sp|Q8ZXL6|RNH2_PYRAE RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|18159942|gb|AAL63331.1| ribonuclease HII (rnhB) [Pyrobaculum aerophilum str. IM2]
          Length = 212

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 20/194 (10%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSSAI-ISI 83
           + GIDE GRG + GP+V+A ++ + +++   G+ DSK++S   RE +YEKI   A  ++ 
Sbjct: 2   IGGIDEAGRGPVIGPMVIAIVVGESDDMIKIGVRDSKRLSPGAREAVYEKILRVAACVNY 61

Query: 84  SSASHQYID----KHNIHKATLDAIYHAVENLQVIPRSA---LIDGRSIPEDL----PCQ 132
                  ID    +  ++   L      +              ++ +     L      +
Sbjct: 62  VVIEPAEIDAYVSRGMLNALELKYTAQLINLCPAEYYYVDSPDVNPKRYESGLVFATGKR 121

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKE- 190
             A+ KG+++   +AAASI+AKV RDRL+++  K+  D+G     GYP+  +  Q ++E 
Sbjct: 122 VIALHKGEAV-PQVAAASIVAKVVRDRLIQLLKKEVGDFG----SGYPSDPRTLQRLREG 176

Query: 191 KGPSCIHRLTFRPL 204
           + PS   R  ++ +
Sbjct: 177 RMPSECIRWQWKTV 190


>gi|48145799|emb|CAG33122.1| JUNB [Homo sapiens]
          Length = 299

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 83/212 (39%), Gaps = 33/212 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80
            V G+DE GRG + GP+V A          +     + DSK +   +RE L+ K+  +  
Sbjct: 29  CVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDF 88

Query: 81  ISIS--SASHQYID-------KHNIHKATLD---AIYHAVENLQVIPRSALIDGRSIPED 128
           +  +    S   I        K+N++  + D    +     +  V      +D   +PE 
Sbjct: 89  VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPET 148

Query: 129 L---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177
                       +     K D++   ++AASI AKV RD+ ++     +K  D   D   
Sbjct: 149 YQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGS 208

Query: 178 GYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203
           GYP   K +  +KE      G     R ++R 
Sbjct: 209 GYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRT 240


>gi|168019116|ref|XP_001762091.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686808|gb|EDQ73195.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 307

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 84/211 (39%), Gaps = 33/211 (15%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI--I 81
           GIDE GRG + GP+V        +           DSK ++  KREELYE + +  +   
Sbjct: 18  GIDEAGRGPVLGPMVYGCAYCPIDQKERISTLKFADSKALTESKREELYENLKADDLMGW 77

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVE----------NLQVIPRSALIDGRSIP----- 126
           ++     + +    + +A ++    + E          +L V      +D    P     
Sbjct: 78  AVDVIDPKDLSAKMLRRAKVNLNTISFESAMGLIRNTLDLGVFLTEVFVDTVGDPGKYQD 137

Query: 127 ---EDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIA--HKKYPDYGFDSHVGYP 180
                 P   F V  K DS+   ++AASI+AKVTRDR +R     +   +       GYP
Sbjct: 138 MLTTKFPGIRFTVSKKADSLFPIVSAASIVAKVTRDRALRDWVVDETGREVTRGFGSGYP 197

Query: 181 -TAKHQQVIKEK-----GPSCIHRLTFRPLR 205
              + +  +++      G   + R ++   +
Sbjct: 198 GDPETKTWLEDHVDPVFGFPSLVRFSWATCK 228


>gi|332252995|ref|XP_003275638.1| PREDICTED: ribonuclease H2 subunit A-like [Nomascus leucogenys]
          Length = 299

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 82/212 (38%), Gaps = 33/212 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80
            V G+DE GRG + GP+V A          +     + DSK +   +RE L+ K+     
Sbjct: 29  CVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLLESERERLFAKMEDRDF 88

Query: 81  ISIS--SASHQYID-------KHNIHKATLD---AIYHAVENLQVIPRSALIDGRSIPED 128
           +  +    S   I        K+N++  + D    +     +  V      +D   +PE 
Sbjct: 89  VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPET 148

Query: 129 L---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177
                       +     K D++   ++AASI AKV RD+ ++     +K  D   D   
Sbjct: 149 YQAWLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGS 208

Query: 178 GYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203
           GYP   K +  +KE      G     R ++R 
Sbjct: 209 GYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRT 240


>gi|84370099|ref|NP_001033623.1| ribonuclease H2 subunit A [Bos taurus]
 gi|110816412|sp|Q2TBT5|RNH2A_BOVIN RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
           AltName: Full=Ribonuclease HI large subunit; Short=RNase
           HI large subunit; AltName: Full=Ribonuclease HI subunit
           A
 gi|83638655|gb|AAI09683.1| Ribonuclease H2, subunit A [Bos taurus]
 gi|296485915|gb|DAA28030.1| ribonuclease H2 subunit A [Bos taurus]
          Length = 299

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 87/217 (40%), Gaps = 34/217 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80
            V G+DE GRG + GP+V A          +     + DSK +S  +R+ L+ K+     
Sbjct: 29  CVLGVDEAGRGPVLGPMVYAICYCPLSRLEDLEALKVADSKTLSESERDRLFAKMEEDGD 88

Query: 81  ---ISISSASHQYID-------KHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127
               ++   S   I        K+N++  + D     V+   +  V      +D   +PE
Sbjct: 89  FVGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNVAQVFVDTVGLPE 148

Query: 128 DL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSH 176
                        +     K D++   ++AASI AKV RD+ ++     +K  D   D  
Sbjct: 149 TYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWKFVEKLQDLDTDYG 208

Query: 177 VGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207
            GYP   K +  +++      G     R ++R  +++
Sbjct: 209 SGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSI 245


>gi|38455391|ref|NP_006388.2| ribonuclease H2 subunit A [Homo sapiens]
 gi|20981704|sp|O75792|RNH2A_HUMAN RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
           AltName: Full=Aicardi-Goutieres syndrome 4 protein;
           Short=AGS4; AltName: Full=RNase H(35); AltName:
           Full=Ribonuclease HI large subunit; Short=RNase HI large
           subunit; AltName: Full=Ribonuclease HI subunit A
 gi|15079910|gb|AAH11748.1| Ribonuclease H2, subunit A [Homo sapiens]
 gi|119604719|gb|EAW84313.1| ribonuclease H2, large subunit [Homo sapiens]
 gi|189067523|dbj|BAG37728.1| unnamed protein product [Homo sapiens]
          Length = 299

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 83/212 (39%), Gaps = 33/212 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80
            V G+DE GRG + GP+V A          +     + DSK +   +RE L+ K+  +  
Sbjct: 29  CVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDF 88

Query: 81  ISIS--SASHQYID-------KHNIHKATLD---AIYHAVENLQVIPRSALIDGRSIPED 128
           +  +    S   I        K+N++  + D    +     +  V      +D   +PE 
Sbjct: 89  VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPET 148

Query: 129 L---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177
                       +     K D++   ++AASI AKV RD+ ++     +K  D   D   
Sbjct: 149 YQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGS 208

Query: 178 GYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203
           GYP   K +  +KE      G     R ++R 
Sbjct: 209 GYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRT 240


>gi|20093626|ref|NP_613473.1| ribonuclease HII [Methanopyrus kandleri AV19]
 gi|74561281|sp|Q8TYV5|RNH2_METKA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|19886492|gb|AAM01403.1| Ribonuclease HII [Methanopyrus kandleri AV19]
          Length = 210

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 18/172 (10%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT--SSAI 80
           M  V GIDE GRG + GP+VVA ++     +  G  DSK+++   R  L   +       
Sbjct: 1   MSGVMGIDEAGRGPVFGPMVVAGVLAPKRELGLGARDSKELTRSARRRLIRALMSDERLR 60

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID--GRSIPEDL--------P 130
           + +       ID+  + KA  +AI   V   + +P   ++D  G   PE L         
Sbjct: 61  VDLRIVWPWEIDEEGVAKAEFEAIRELVR--RAMPDEVILDKPGNYSPERLRRELDLPEG 118

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
               A  + D+    ++AASI+AK  RD ++R+   +Y + G     GYP+ 
Sbjct: 119 INLIAEERADAKYEVVSAASIVAKTYRDWIVRLLELEYGEVG----SGYPSD 166


>gi|268324099|emb|CBH37687.1| ribonuclease HII [uncultured archaeon]
 gi|268326416|emb|CBH40004.1| ribonuclease HII [uncultured archaeon]
          Length = 210

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 85/204 (41%), Gaps = 30/204 (14%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86
            G+DE GRG + G + VA ++        G+ DSK++S  +RE L + I  +  + +   
Sbjct: 6   IGVDEAGRGPVIGSMFVAGVLNYDGLEELGVKDSKRLSASRREHLAKIIEDATEVHVVEM 65

Query: 87  SHQYIDK----HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC----------- 131
           +   IDK      ++K T++     + + Q  P  A +D   +  +              
Sbjct: 66  TASEIDKAREERTLNKITVELFSEVINHFQ--PARAFVDAADVKPERFAANLRSNYKRVG 123

Query: 132 --QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVI 188
             +  +  K D     ++AASI+AKV RDR +R+      + G +   GYP   K  Q +
Sbjct: 124 ELEIISEWKADDHYPVVSAASIVAKVHRDRSIRVLEA---EIGAEIGSGYPADPKTIQFL 180

Query: 189 KEK-------GPSCIHRLTFRPLR 205
           K               R +++ + 
Sbjct: 181 KGLLKGKELDNIPAYVRRSWKTVH 204


>gi|320168268|gb|EFW45167.1| ribonuclease H2 [Capsaspora owczarzaki ATCC 30864]
          Length = 385

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 88/217 (40%), Gaps = 35/217 (16%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI--- 80
           GIDE GRG + GP+V        ++ P     G +DSKK+    R  L++ I  +     
Sbjct: 113 GIDEAGRGPVLGPMVYGISYCPLSDDPRLRQMGFDDSKKLDEPTRRRLFDDINKANDFMG 172

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR----------------- 123
            S+   S Q I    + +A  +    + +    + + AL DG                  
Sbjct: 173 FSVCVISPQDISSSMLRRAKYNLNALSHDTAMSLVQRALDDGVNIAKVFVDTVGTAETYQ 232

Query: 124 -SIPEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD---YGFDSHVG 178
             + E  P   F V  K DS+   ++AASI AKV RD ++ I     P     G D   G
Sbjct: 233 EKLSERFPGIEFKVSAKADSLFPIVSAASICAKVVRDHVLDIWQFSEPHGSTIGRDFGCG 292

Query: 179 YPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNLSV 209
           YP+    +Q ++       G   + R ++   +N+ +
Sbjct: 293 YPSDPVTKQWLQTNMDSVFGFPGVVRFSWGTCKNILI 329


>gi|198428317|ref|XP_002127465.1| PREDICTED: similar to ribonuclease H2, large subunit [Ciona
           intestinalis]
          Length = 292

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 81/213 (38%), Gaps = 33/213 (15%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYE---------- 73
           GIDE GRG + GP+V A+     +        G +DSK +  ++RE L+E          
Sbjct: 32  GIDEAGRGPVLGPMVYASCFTPISCKDKLAGLGCDDSKVLKEEQRESLFETLNKASEYIG 91

Query: 74  ---KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
               I S A IS S       + ++I   T   +  +   L V      +D    P+   
Sbjct: 92  WMIHILSPAYISTSMLGRSKYNLNSISHDTAIDLIRSALKLGVEVTEVYVDTVGPPQTYA 151

Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAH-KKYPDYGFDSHVGYP 180
            +   +          K DS    ++AASI AKV RD+ ++    ++ PD       GYP
Sbjct: 152 EKLKKIFPSIKFTVEKKADSKYPVVSAASICAKVCRDKAVKEWRFRENPDTDTKYGSGYP 211

Query: 181 T-AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207
                +  ++       G     R ++     L
Sbjct: 212 ADPVTKVWLRNNVDRIFGFPSFVRFSWSTTSKL 244


>gi|315364763|pdb|3PUF|A Chain A, Crystal Structure Of Human Rnase H2 Complex
 gi|315364766|pdb|3PUF|D Chain D, Crystal Structure Of Human Rnase H2 Complex
 gi|315364769|pdb|3PUF|G Chain G, Crystal Structure Of Human Rnase H2 Complex
 gi|315364772|pdb|3PUF|J Chain J, Crystal Structure Of Human Rnase H2 Complex
 gi|315364775|pdb|3PUF|M Chain M, Crystal Structure Of Human Rnase H2 Complex
 gi|315364778|pdb|3PUF|P Chain P, Crystal Structure Of Human Rnase H2 Complex
          Length = 302

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 83/212 (39%), Gaps = 33/212 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80
            V G+DE GRG + GP+V A          +     + DSK +   +RE L+ K+  +  
Sbjct: 32  CVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDF 91

Query: 81  ISIS--SASHQYID-------KHNIHKATLD---AIYHAVENLQVIPRSALIDGRSIPED 128
           +  +    S   I        K+N++  + D    +     +  V      +D   +PE 
Sbjct: 92  VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPET 151

Query: 129 L---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177
                       +     K D++   ++AASI AKV RD+ ++     +K  D   D   
Sbjct: 152 YQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGS 211

Query: 178 GYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203
           GYP   K +  +KE      G     R ++R 
Sbjct: 212 GYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRT 243


>gi|308509890|ref|XP_003117128.1| CRE-RNH-2 protein [Caenorhabditis remanei]
 gi|308242042|gb|EFO85994.1| CRE-RNH-2 protein [Caenorhabditis remanei]
          Length = 323

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 101/224 (45%), Gaps = 42/224 (18%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAII--LDPNNI--PFGINDSKKISHKKREELY--- 72
              +  V GIDE GRG + GP+V AA I  LD N      G++DSK ++  KREE++   
Sbjct: 43  ADGVPCVLGIDEAGRGPVLGPMVYAAAISPLDQNTELKNLGVDDSKALNEAKREEIFDKM 102

Query: 73  ---EKITSSAIISISSASHQYI-------DKHNIHKATLDAIYHAVE-----NLQVIPRS 117
              E+I      +I S S + I        K+++++ + DA    ++     N+ V+   
Sbjct: 103 NNDEEIQQVVAYAIRSLSPELISASMLKRHKYSLNEVSHDAAIALIKDAFACNVNVVEIK 162

Query: 118 ALIDG------RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAH----- 165
               G        + +  P  +  V  K DS+   ++AASI AKVTRD  +R        
Sbjct: 163 VDTVGPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDTRLRNWQFKEKG 222

Query: 166 KKYPDYGFDSHVGYP----TAKHQQVIKE--KGPSCIHRLTFRP 203
            + P+ G+    GYP    T K  Q+  +   G   + R +++ 
Sbjct: 223 IRIPENGY--GSGYPGDPNTKKFLQLSVDPIFGFCSLVRASWKT 264


>gi|61557385|ref|NP_001013252.1| ribonuclease H2 subunit A [Rattus norvegicus]
 gi|81889649|sp|Q5U209|RNH2A_RAT RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
           AltName: Full=Ribonuclease HI large subunit; Short=RNase
           HI large subunit; AltName: Full=Ribonuclease HI subunit
           A
 gi|55562777|gb|AAH86345.1| Rnaseh2a protein [Rattus norvegicus]
 gi|55824706|gb|AAH86539.1| Ribonuclease H2, subunit A [Rattus norvegicus]
 gi|149037817|gb|EDL92177.1| ribonuclease H2, large subunit, isoform CRA_a [Rattus norvegicus]
 gi|149037820|gb|EDL92180.1| ribonuclease H2, large subunit, isoform CRA_a [Rattus norvegicus]
          Length = 301

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 80/213 (37%), Gaps = 34/213 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS--- 77
            V G+DE GRG + GP+V A          +     + DSK ++  +RE L+ K+     
Sbjct: 29  CVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGD 88

Query: 78  ---SA-------IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
               A       +IS S       + +++   T   +     +  V      +D   +PE
Sbjct: 89  FVGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQVFVDTVGMPE 148

Query: 128 DL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSH 176
                        +     K DS+   ++AASIIAKV RD+ ++     +       D  
Sbjct: 149 TYQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQFVESLQGLDSDYG 208

Query: 177 VGYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203
            GYP   K +  +++      G     R ++  
Sbjct: 209 SGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWST 241


>gi|49115760|gb|AAH73515.1| LOC443655 protein [Xenopus laevis]
          Length = 305

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 89/244 (36%), Gaps = 47/244 (19%)

Query: 7   PERPHFE-LEAM-----VREKNMWPVA-------GIDEVGRGALAGPVVVAAIILD---- 49
           P RP  E  E       +    +  +        GIDE GRG + GP+V           
Sbjct: 1   PTRPELEEFERNNSQSRLLSSPVPQICRTEDCCLGIDEAGRGPVLGPMVYGICYCPVARK 60

Query: 50  PNNIPFGINDSKKISHKKREELYEKITSSAIIS----------ISSASHQYIDKHNIHKA 99
            +     + DSK +S   RE L+EK+  S+             I S S Q   K+N++  
Sbjct: 61  KDLQDSKVADSKTLSEADRERLFEKLNGSSDYIGWALHILSPNIISTSMQQRAKYNLNAL 120

Query: 100 TLDAIYHAVE---NLQVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIA 147
           + D     ++   +  V      +D     E    +   +          K DS+   ++
Sbjct: 121 SHDTAIGLIQFALDAGVQLTEVFVDTVGPAEKYQEKLKKIFPELDVTVRPKADSLFPVVS 180

Query: 148 AASIIAKVTRDRLMRIAH--KKYPDYGFDSHVGYPT-AKHQQVIKEK-----GPSCIHRL 199
           AASI AKV RDR+++     +   +   D   GYP   K ++ +        G     R 
Sbjct: 181 AASICAKVARDRVVKDWKFVEDLGELDADYGSGYPNDPKTKEWLSRHLDPVFGYPQFVRF 240

Query: 200 TFRP 203
           ++  
Sbjct: 241 SWST 244


>gi|73986851|ref|XP_542041.2| PREDICTED: similar to Ribonuclease HI large subunit (RNase HI large
           subunit) (RNase H(35)) (Ribonuclease H2) (RNase H2)
           [Canis familiaris]
          Length = 299

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 87/217 (40%), Gaps = 34/217 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS--- 77
            V G+DE GRG + GP+V A      + +       + DSK +S  +R+ L+ K+     
Sbjct: 29  CVLGVDEAGRGPVLGPMVYAICYCPLSRLGDLEALKVADSKTLSESERDRLFVKMEKDRD 88

Query: 78  ---SA-------IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
               A       +IS S       + +++   T   +     +  V      +D   +PE
Sbjct: 89  FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGLPE 148

Query: 128 DL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSH 176
                        +     K D++   ++AASI AKV RD+ ++  H  +K  D   D  
Sbjct: 149 TYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKSWHFVEKLQDLDADYG 208

Query: 177 VGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207
            GYP   K +  +++      G     R ++R  +++
Sbjct: 209 SGYPNDPKTKAWLRKHVEPVFGFPQFVRFSWRTAQSI 245


>gi|219111921|ref|XP_002177712.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217410597|gb|EEC50526.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 393

 Score =  121 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 96/221 (43%), Gaps = 42/221 (19%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAII---LDPNNIPFGINDSKKISHKKREELYEKIT---- 76
             V GIDE GRG++ GP+V  A      D + IP   NDSK++S  KR  L  KI     
Sbjct: 111 GVVVGIDEAGRGSILGPMVYGAAFWNPCDEDRIPNDFNDSKQLSEDKRAMLLHKIMYDTP 170

Query: 77  ----SSAIISISSASHQYI--DKHNIHKATLDAIYHAVENL---QVIPRSALIDG----- 122
               +  ++  S  S   +  + +N+++ + DA    +E+L    V   +  ID      
Sbjct: 171 EMGFAVRVLHASEISRNMLRTESYNLNQMSHDAAAGIIEHLLEAGVQIGACFIDTVGNAD 230

Query: 123 ---RSIPEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAH------KKYPDYG 172
              R + ++ P   F V  K D+     +A S++AK  RDR+M          K+ P +G
Sbjct: 231 HYKRRLQQEFPGIDFTVESKADAKYPPCSAGSVVAKNVRDRMMESFQYSEMSLKRDPKFG 290

Query: 173 FDSHVGYPTA-------KHQQVIKEKGPSCIHRLTFRPLRN 206
                GYP+        ++ Q  K  G   + R ++ P + 
Sbjct: 291 ----SGYPSDPVCKDWMENNQNCKVFGYPDVVRFSWNPAKK 327


>gi|118575753|ref|YP_875496.1| ribonuclease HII [Cenarchaeum symbiosum A]
 gi|189043576|sp|A0RV25|RNH2_CENSY RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|118194274|gb|ABK77192.1| ribonuclease HII [Cenarchaeum symbiosum A]
          Length = 205

 Score =  121 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 84/204 (41%), Gaps = 27/204 (13%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA 79
             V G+DE GRG+L GP+V+A + +  N        G+ DSKK++ K RE LY +I + A
Sbjct: 1   MLVCGVDEAGRGSLVGPLVIAGVAIKRNRMRELKSMGVRDSKKLTRKARESLYPEIVNMA 60

Query: 80  I-ISISSASHQYID----KHNIHKATLDAIYHAVENLQVIPRSAL-IDGR------SIPE 127
               IS      +D    +H ++      +   +  L          D         + E
Sbjct: 61  DSYHISRVPPGVVDRSVGRHMLNDLEARYMARVITRLGHGTTYVDSCDVNPRRFGGRVSE 120

Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
                  +  + D   + ++AASI+AKV RDR +    K +     D   GYP+ +    
Sbjct: 121 MSGRTVRSYHRADDRFVIVSAASILAKVARDRSIERLRKSH-----DVGSGYPSDRRTVG 175

Query: 188 I-----KEKGP-SCIHRLTFRPLR 205
                  + G      R ++RP R
Sbjct: 176 FVRGYYNKNGAMPPFVRRSWRPAR 199


>gi|301171214|ref|NP_001180335.1| ribonuclease H2, subunit A [Xenopus laevis]
 gi|71051192|gb|AAH99334.1| Unknown (protein for MGC:116529) [Xenopus laevis]
          Length = 302

 Score =  121 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 49/210 (23%), Positives = 81/210 (38%), Gaps = 34/210 (16%)

Query: 28  GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAIIS- 82
           GIDE GRG + GP+V            +     + DSK +S   RE L+EK+  S+    
Sbjct: 32  GIDEAGRGPVLGPMVYGICYCPVARKKDLQDSKVADSKTLSEADRERLFEKLNGSSDYIG 91

Query: 83  ---------ISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPEDLP 130
                    + S S Q   K+N++  + D     ++   +  V      +D     E   
Sbjct: 92  WALHILSPNVISTSMQQRAKYNLNALSHDTAIGLIQFALDAGVQLTEVFVDTVGPAEKYQ 151

Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHVGY 179
            +   +          K DS+   ++AASI AKV RDR+++     +   +   D   GY
Sbjct: 152 EKLKKIFPELDVTVRPKADSLFPVVSAASICAKVARDRVVKDWKFVEDLGELDADYGSGY 211

Query: 180 PT-AKHQQVIKEK-----GPSCIHRLTFRP 203
           P   K ++ +        G     R ++  
Sbjct: 212 PNDPKTKEWLSRHLDPVFGYPQFVRFSWST 241


>gi|221122753|ref|XP_002163480.1| PREDICTED: similar to ribonuclease H2, large subunit [Hydra
           magnipapillata]
          Length = 339

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 55/212 (25%), Positives = 86/212 (40%), Gaps = 32/212 (15%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI--- 80
           GIDE GRG + GP+V +      + I      G  DSK ++ +KR+ L   I ++     
Sbjct: 32  GIDEAGRGPVLGPMVYSVCYCPISMIKKLSDLGFADSKTLTEEKRDNLLSVIENNCDFIG 91

Query: 81  ISISSASHQYIDKHNI--HKATLDAIYH------------AVENLQVIPRSALIDG---- 122
            +I   S   I    +  +K TL+ I H            A  N+  +    + D     
Sbjct: 92  WAIKIISPTEISNEMLRRYKVTLNEISHGAAIELTRKTINAGANITEMYVDTVGDASKYQ 151

Query: 123 RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
             + E     +  V  K D++   ++AASI AKV RDR ++       D   D   GYP 
Sbjct: 152 NKLSEVFDGVSVKVTPKADALFPIVSAASICAKVARDRCIQGWQFPEGDIKEDYGSGYPA 211

Query: 182 -AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207
             K +Q +K+      G     R ++    N+
Sbjct: 212 DPKTKQWLKDVVDPVFGFPQFVRFSWSTCVNI 243


>gi|325974872|gb|ADZ47886.1| ribonuclease H2 subunit A [Capra hircus]
          Length = 286

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 87/217 (40%), Gaps = 34/217 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80
            V G+DE GRG + GP+V A          +     + DSK +S  +R+ L+ K+     
Sbjct: 29  CVLGVDEAGRGPVLGPMVYAICYCPLSRLEDLEALKVADSKTLSESERDRLFAKMEEDGD 88

Query: 81  ---ISISSASHQYID-------KHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127
               ++   S   I        K+N++  + D     V+   +  V      +D   +PE
Sbjct: 89  FVGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNVAQVFVDTGGLPE 148

Query: 128 DL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSH 176
                        +     K D++   ++AASI AKV RD+ ++     +K  D   D  
Sbjct: 149 TYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWKFVEKLQDLDTDYG 208

Query: 177 VGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207
            GYP   K +  +++      G     R ++R  +++
Sbjct: 209 SGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSI 245


>gi|118355616|ref|XP_001011067.1| ribonuclease HII family protein [Tetrahymena thermophila]
 gi|89292834|gb|EAR90822.1| ribonuclease HII family protein [Tetrahymena thermophila SB210]
          Length = 284

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 38/227 (16%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEK 74
           ++KN+  V GIDE GRG + GP+V    +      P     G NDSK+++ +KR++LY +
Sbjct: 7   KKKNLDWVMGIDEAGRGPVLGPMVYGCCVWPIQYEPELKLEGFNDSKQLTEQKRDQLYAR 66

Query: 75  ITS----SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--- 127
           +           +   S +++    + K        +      +  S +  G ++ +   
Sbjct: 67  MEELKNDKLYFEVRILSAEFLSNRMLAKNRDSLNELSFNAAYSLIDSVMSQGFNVTQVFL 126

Query: 128 -----------------DLPCQAFAVI---KGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                                         K D+    + AASI AKVTRD  +     +
Sbjct: 127 DTVGKEETYQAKLYQDYKYTYPQLKFTVSSKADAKFPVVGAASICAKVTRDLQITNNDMR 186

Query: 168 YP-DYGFDSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207
            P D    +  GYP+    ++ ++E      G     R ++  + N+
Sbjct: 187 EPLDLSKATGSGYPSDPNTKKWLQEVFDPVFGFPSNVRYSWSTVDNI 233


>gi|322490611|emb|CBZ25873.1| putative ribonuclease HII [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 474

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 43/115 (37%), Positives = 57/115 (49%), Gaps = 9/115 (7%)

Query: 100 TLDAIYHAVENLQVIPRSALIDGRSIP---------EDLPCQAFAVIKGDSISLSIAAAS 150
            L       +   + P   LIDG ++P           +      +I+GD  SLSIAAAS
Sbjct: 350 LLKGATEYFDFEPIQPPLVLIDGHAVPGPSYDYFTSVRIGGDVQPIIEGDKRSLSIAAAS 409

Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
            +AKVTRD LM      YP YGF  + GYP  +H + + + G   IHR T+RP R
Sbjct: 410 CLAKVTRDELMNYIDALYPGYGFRENKGYPVEQHMKYVAKNGLCPIHRKTYRPCR 464



 Score = 62.4 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 14/91 (15%)

Query: 27  AGIDEVGRGALAGPVVVAAII-------------LDPNNIPFGINDSKKISHKKREELYE 73
            G DE GRG LAGPVV AA+              L      F I DSK +S ++R+ ++ 
Sbjct: 136 IGCDEAGRGPLAGPVVGAAVSRIPVSSFNNEFDQLYEAPEQFQIFDSKSVSERQRDLVFA 195

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDA 103
            IT       I+S     +      +AT  A
Sbjct: 196 MITGHVDFFDIASCKKFLVQHCAGDEATSLA 226


>gi|91772495|ref|YP_565187.1| ribonuclease HII [Methanococcoides burtonii DSM 6242]
 gi|121691891|sp|Q12YN9|RNH2_METBU RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|91711510|gb|ABE51437.1| Ribonuclease HII [Methanococcoides burtonii DSM 6242]
          Length = 213

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 33/208 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI- 80
           + GIDE G+G + GP+ +  + +D +        G+ DSKK+S K+R  L  +I   A  
Sbjct: 3   IIGIDEAGKGPVIGPMCIGGVRIDEDKSNALKNLGVADSKKLSPKRRVHLAAQIKKYADG 62

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIPEDL--------- 129
             +   S   ID+     +  D +  A  ++  ++       D   + E+          
Sbjct: 63  WFVYEVSPNQIDELRKLMSMNDIMVLAFGSVIEELPSDKIYADAADVKEERFGKRLFDNY 122

Query: 130 --------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                   P +  +    D +   ++AASI+AKV RD L+        D G D   GYP+
Sbjct: 123 MEKHPDVSPPEVISKHGADDLFPVVSAASILAKVRRDELIEKIKV---DMGVDIGSGYPS 179

Query: 182 AKHQQVIKEKGP------SCIHRLTFRP 203
               +   E           I R +++ 
Sbjct: 180 DPKTKKFLENWYRENSSFPDIVRHSWKT 207


>gi|45361019|ref|NP_989146.1| ribonuclease H2, subunit A [Xenopus (Silurana) tropicalis]
 gi|38494390|gb|AAH61614.1| ribonuclease H2, large subunit [Xenopus (Silurana) tropicalis]
          Length = 301

 Score =  120 bits (303), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 83/210 (39%), Gaps = 34/210 (16%)

Query: 28  GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAIIS- 82
           GIDE GRG + GP+V            +     + DSK +S  +RE L+EK+ S++    
Sbjct: 32  GIDEAGRGPVLGPMVYGICYCPVARKKDLQDLKVADSKTLSEAERERLFEKLNSTSDYIG 91

Query: 83  ---------ISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPEDLP 130
                    I S S Q   K+N++  + D     ++   +  V  +   +D     E   
Sbjct: 92  WALHILSPNIISTSMQQRAKYNLNALSHDTAIGLIQFALDAGVQLKEVFLDTVGPAEKYQ 151

Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHVGY 179
            +   +          K DS+   ++AASI AKV RDR+++     +   D   +   GY
Sbjct: 152 DKLKKIFPELDVTVRPKADSLFPVVSAASICAKVARDRVVKEWKFVEDLGDPDAEYGSGY 211

Query: 180 PT-AKHQQVIKEK-----GPSCIHRLTFRP 203
           P   K +  +        G     R ++  
Sbjct: 212 PNDPKTKDWLSRHLDPVFGYPQFVRFSWST 241


>gi|154345460|ref|XP_001568667.1| ribonuclease HII [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134066009|emb|CAM43794.1| putative ribonuclease HII [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 474

 Score =  120 bits (303), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 112 QVIPRSALIDGRSIP---------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162
            + P   LIDG ++P           +      +I+GD  SLSIAAAS +AKVTRD LM 
Sbjct: 362 PIQPPLVLIDGHAVPGPSYDYFTSVSIGGDVQPIIEGDKRSLSIAAASCLAKVTRDELMN 421

Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
                YP YGF  + GYP  +H + + + G   IHR T+RP R
Sbjct: 422 YIGALYPGYGFGENKGYPVEQHMKYVAKNGLCPIHRKTYRPCR 464



 Score = 61.2 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 13/68 (19%)

Query: 27  AGIDEVGRGALAGPVVVAAII-------------LDPNNIPFGINDSKKISHKKREELYE 73
            G DE GRG LAGPVV AA+              L      F I DSK +S ++R+ ++ 
Sbjct: 136 IGCDEAGRGPLAGPVVGAAVSRIPVSSFNNEFDQLYEAPEQFQIFDSKSVSERQRDLVFA 195

Query: 74  KITSSAII 81
            IT     
Sbjct: 196 MITGHVDF 203


>gi|1694784|emb|CAA60867.1| rnhB [Haemophilus influenzae]
          Length = 97

 Score =  120 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/92 (46%), Positives = 60/92 (65%), Gaps = 1/92 (1%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           +    +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR  L E+I   A+
Sbjct: 6   QGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKAL 65

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENL 111
             ++  A    ID+ NI +A+L A+  AV++L
Sbjct: 66  AWALGRAEADEIDEINILQASLLAMTRAVKSL 97


>gi|328849346|gb|EGF98528.1| hypothetical protein MELLADRAFT_46031 [Melampsora larici-populina
           98AG31]
          Length = 279

 Score =  120 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 88/231 (38%), Gaps = 50/231 (21%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA--- 79
            GIDE GRG + GP+V AA     +        G  DSK ++H+KR  L+E I  S+   
Sbjct: 1   MGIDEAGRGPVLGPMVYAASFCPVDFSEELKSLGFADSKTLTHQKRCNLFESIVQSSGKI 60

Query: 80  IISISSASHQYIDKHNIHKATLDAIYHAVE----------NLQVIPRSALIDGRSIPED- 128
             ++   S   I      ++  +    A +          + Q I +   +D    P+  
Sbjct: 61  QWNVKVMSPSDISMGMSRRSPYNLNAQAFDATVQIIQAALDHQYILQHIYVDTLGPPKTH 120

Query: 129 -------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIA---------HKKYPD- 170
                   P   F V  K DSI   ++AASI+AKVTRD ++             K+  + 
Sbjct: 121 QLNLQKAFPNLHFTVCSKADSIYPIVSAASIVAKVTRDAIVENWMFVELSIGKRKRLEES 180

Query: 171 --------YGFDSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207
                   +   +  GYP        +K       G   + R ++  ++ L
Sbjct: 181 QDDDDDSIWNLPTGSGYPADPNTTAWLKSHFDKVFGYPQLARFSWATVKTL 231


>gi|146103491|ref|XP_001469573.1| ribonuclease HII [Leishmania infantum]
 gi|134073943|emb|CAM72682.1| putative ribonuclease HII [Leishmania infantum JPCM5]
 gi|322503389|emb|CBZ38474.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 474

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/115 (37%), Positives = 57/115 (49%), Gaps = 9/115 (7%)

Query: 100 TLDAIYHAVENLQVIPRSALIDGRSIP---------EDLPCQAFAVIKGDSISLSIAAAS 150
            L       +   + P   LIDG ++P           +      +I+GD  SLSIAAAS
Sbjct: 350 LLKGATEYFDFEPIQPPLVLIDGHAVPGPSYDYFTSVRIGGDVQPIIEGDKRSLSIAAAS 409

Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
            +AKVTRD LM      YP YGF  + GYP  +H + + + G   IHR T+RP R
Sbjct: 410 CLAKVTRDELMNYIDALYPGYGFRENKGYPVEQHMKYVAKNGLCPIHRKTYRPCR 464



 Score = 63.2 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 14/91 (15%)

Query: 27  AGIDEVGRGALAGPVVVAAII-------------LDPNNIPFGINDSKKISHKKREELYE 73
            G DE GRG LAGPVV AA+              L      F I DSK +S ++R+ ++ 
Sbjct: 136 IGCDEAGRGPLAGPVVGAAVSRIPVSSFNNEFDQLYEAPEQFQIFDSKSVSERQRDLVFA 195

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDA 103
            IT       I+S     +      +AT  A
Sbjct: 196 MITGHVDFFDIASCKKFVVHHCAGDEATSLA 226


>gi|294464821|gb|ADE77916.1| unknown [Picea sitchensis]
          Length = 293

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 33/212 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI 80
            + GIDE GRG + GP+V   +    +           DSK +  +KREEL+E + + A 
Sbjct: 14  CIMGIDEAGRGPVLGPMVYGCLYCSASYQETLATLKFADSKTLKEEKREELFESLKADAS 73

Query: 81  --ISISSASHQYID-------KHNIHKATLDAIYHAVENL---QVIPRSALIDGR----- 123
              ++     + +        K N++  + DA    V  +    ++     +D       
Sbjct: 74  LGWAVDIIDPRELSAKMLQRIKVNLNTISHDAAMGLVNTVLSKGILLSEVYVDTVGDADK 133

Query: 124 ---SIPEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMR--IAHKKYPDYGFDSHV 177
               + E  P   F V  K DS+   ++ ASI+AKVTRD  +R  +  +       +   
Sbjct: 134 YRIKLEEKFPGIKFVVSKKADSLYPIVSGASIVAKVTRDNALRGWVLDETAEGISRNFGS 193

Query: 178 GYP-TAKHQQVIKE-----KGPSCIHRLTFRP 203
           GYP   + +  ++E      G   + R ++  
Sbjct: 194 GYPGDPETKAWLEENKHPVFGFPTLVRFSWAT 225


>gi|55648379|ref|XP_512415.1| PREDICTED: ribonuclease H2 subunit A isoform 2 [Pan troglodytes]
          Length = 299

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 83/212 (39%), Gaps = 33/212 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80
            V G+DE GRG + GP+V A          +     + DSK +   +RE L+ K+  +  
Sbjct: 29  CVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLLESERERLFAKMEDTDF 88

Query: 81  ISIS--SASHQYID-------KHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPED 128
           +  +    S   I        K+N++  + D     ++      V      +D   +PE 
Sbjct: 89  VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALYQGVNVTQVFVDTVGMPET 148

Query: 129 L---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177
                       +     K D++   ++AASI AKV RD+ ++     +K  D   D   
Sbjct: 149 YQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDSDTDYGS 208

Query: 178 GYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203
           GYP   K +  +KE      G     R ++R 
Sbjct: 209 GYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRT 240


>gi|157876514|ref|XP_001686603.1| ribonuclease HII [Leishmania major strain Friedlin]
 gi|16930798|gb|AAL32059.1|AF441859_1 ribonuclease HIIC [Leishmania major]
 gi|68129678|emb|CAJ08984.1| putative ribonuclease HII [Leishmania major strain Friedlin]
          Length = 474

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/115 (37%), Positives = 57/115 (49%), Gaps = 9/115 (7%)

Query: 100 TLDAIYHAVENLQVIPRSALIDGRSIP---------EDLPCQAFAVIKGDSISLSIAAAS 150
            L       +   + P   LIDG ++P           +      +I+GD  SLSIAAAS
Sbjct: 350 LLKGATEYFDFEPIQPPLVLIDGHAVPGPSYDYFTSVRIGGDVQPIIEGDKRSLSIAAAS 409

Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
            +AKVTRD LM      YP YGF  + GYP  +H + + + G   IHR T+RP R
Sbjct: 410 CLAKVTRDELMNYIDALYPGYGFRDNKGYPVEQHMKYVAKNGLCPIHRKTYRPCR 464



 Score = 62.0 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 14/88 (15%)

Query: 27  AGIDEVGRGALAGPVVVAAII-------------LDPNNIPFGINDSKKISHKKREELYE 73
            G DE GRG LAGPVV AA+              L      F I DSK +S ++R+ ++ 
Sbjct: 136 IGCDEAGRGPLAGPVVGAAVSRIPVSSFNNEFDQLYEAPEQFQIFDSKSVSERQRDLVFA 195

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKAT 100
            IT       I+S     +      +AT
Sbjct: 196 MITGHVDFFDIASCKKFVVHHCAGDEAT 223


>gi|268559996|ref|XP_002637939.1| C. briggsae CBR-RNH-2 protein [Caenorhabditis briggsae]
 gi|187035517|emb|CAP25398.1| CBR-RNH-2 protein [Caenorhabditis briggsae AF16]
          Length = 297

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 93/223 (41%), Gaps = 44/223 (19%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELY----- 72
            +  V GIDE GRG + GP+V AA I   +        G++DSK ++  KREE++     
Sbjct: 19  GVPCVLGIDEAGRGPVLGPMVYAAAISPMDQNAELKALGVDDSKALNEAKREEIFEKINN 78

Query: 73  -EKITSSAIISISSASHQYI-------DKHNIHKATLDAI---YHAVENLQVIPRSALID 121
            E+I      +I S S + I        K+++++ + DA            V      +D
Sbjct: 79  DEEIQQIVAYAIRSLSPELISSSMLKRHKYSLNEVSHDAAIALIRDAFACNVNVVEIKVD 138

Query: 122 GR--------SIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKY---- 168
                      +    P  +  V  K DS+   ++AASI AKVTRD  +R    K     
Sbjct: 139 TVGPKATYQAKLERLFPGISICVTEKADSLFPIVSAASIAAKVTRDTRLRNWEFKEENIK 198

Query: 169 -PDYGFDSHVGYP----TAKHQQVIKEK---GPSCIHRLTFRP 203
            P+ GF    GYP    T K  Q +      G   + R +++ 
Sbjct: 199 VPENGF--GSGYPGDPNTKKFLQ-LSVHPIFGFCSLVRASWKT 238


>gi|58037175|ref|NP_081463.1| ribonuclease H2 subunit A [Mus musculus]
 gi|85541053|sp|Q9CWY8|RNH2A_MOUSE RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
           AltName: Full=Ribonuclease HI large subunit; Short=RNase
           HI large subunit; AltName: Full=Ribonuclease HI subunit
           A
 gi|312208159|pdb|3P5J|A Chain A, The Structure Of The Human Rnase H2 Complex Defines Key
           Interaction Interfaces Relevant To Enzyme Function And
           Human Disease
 gi|23273263|gb|AAH38158.1| Ribonuclease H2, large subunit [Mus musculus]
 gi|74138850|dbj|BAE27230.1| unnamed protein product [Mus musculus]
          Length = 301

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 80/213 (37%), Gaps = 34/213 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS--- 77
            V G+DE GRG + GP+V A          +     + DSK ++  +RE L+ K+     
Sbjct: 29  CVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGD 88

Query: 78  ---SA-------IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
               A       +IS S       + +++   T   +     +  V      +D   +PE
Sbjct: 89  FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPE 148

Query: 128 DL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSH 176
                        +     K DS+   ++AASI AKV RD+ ++     +   D   D  
Sbjct: 149 TYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYG 208

Query: 177 VGYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203
            GYP   K +  +++      G     R ++  
Sbjct: 209 SGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWST 241


>gi|42601730|gb|AAS21614.1| ribonuclease HII [Leishmania panamensis]
          Length = 267

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 112 QVIPRSALIDGRSIP---------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162
            + P   LIDG ++P           +      +I+GD  SLSIAAAS +AKVTRD LM 
Sbjct: 155 PIQPPLVLIDGHAVPGPSYDYFTSVSIGGDVQPIIEGDKRSLSIAAASCLAKVTRDELMN 214

Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
                YP YGF  + GYP  +H + + + G   IHR T+RP R
Sbjct: 215 YIGALYPGYGFGENKGYPVEQHMKYVAKNGLCPIHRKTYRPCR 257


>gi|116284049|gb|AAH29252.1| Rnaseh2a protein [Mus musculus]
          Length = 254

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 80/213 (37%), Gaps = 34/213 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS--- 77
            V G+DE GRG + GP+V A          +     + DSK ++  +RE L+ K+     
Sbjct: 29  CVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGD 88

Query: 78  ---SA-------IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
               A       +IS S       + +++   T   +     +  V      +D   +PE
Sbjct: 89  FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPE 148

Query: 128 DL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSH 176
                        +     K DS+   ++AASI AKV RD+ ++     +   D   D  
Sbjct: 149 TYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYG 208

Query: 177 VGYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203
            GYP   K +  +++      G     R ++  
Sbjct: 209 SGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWST 241


>gi|89268632|emb|CAJ82403.1| ribonuclease H2, large subunit [Xenopus (Silurana) tropicalis]
          Length = 301

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 83/210 (39%), Gaps = 34/210 (16%)

Query: 28  GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAIIS- 82
           GIDE GRG + GP+V            +     + DSK +S  +RE L+EK+ S++    
Sbjct: 32  GIDEAGRGPVLGPMVYGICYCPVARKKDLQDLKVADSKTLSEAERERLFEKLNSTSDYIG 91

Query: 83  ---------ISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPEDLP 130
                    I S S Q   K+N++  + D     ++   +  V  +   +D     E   
Sbjct: 92  WALHILSPNIISTSMQQRAKYNLNALSHDTAIGLIQFALDAGVQLKEVFLDTVGPAEKYQ 151

Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHVGY 179
            +   +          K DS+   ++AASI AKV RDR+++     +   D   +   GY
Sbjct: 152 DKLKKIFPELDVTVRPKADSLFPVVSAASICAKVARDRVVKDWKFVEDLGDPDAEYGSGY 211

Query: 180 PT-AKHQQVIKEK-----GPSCIHRLTFRP 203
           P   K +  +        G     R ++  
Sbjct: 212 PNDPKTKDWLSRHLDPVFGYPQFVRFSWST 241


>gi|193709059|ref|XP_001946925.1| PREDICTED: ribonuclease H2 subunit A-like [Acyrthosiphon pisum]
          Length = 312

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 97/237 (40%), Gaps = 39/237 (16%)

Query: 3   CNSIPERPHFEL-EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGI 57
            NS   R   +L E+   EK    + GIDE GRG + GP+V        +N       G 
Sbjct: 22  NNSFDVRIESDLPESTTTEK---CILGIDEAGRGPVLGPMVYGTSYCSVDNQAILKTLGC 78

Query: 58  NDSKKISHKKREELYEKITSSAI---ISISSASHQYI-------DKHNIHKATLDAI--- 104
            DSK +S + R+++++ IT  +     ++   S   I        K ++++ + +A    
Sbjct: 79  ADSKVLSEQARDDIFDGITKQSEILGWAVHIISPTTISNCSFRRQKCSLNEISHNAAIGL 138

Query: 105 YHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKV 155
              V +  V      +D    PE    +  ++          K DS+   ++AASI AKV
Sbjct: 139 IQRVLDRGVNICEVFVDTVGPPEKYQEKLLSIFPQLKITVSKKADSLFPIVSAASICAKV 198

Query: 156 TRDRLMRIAHKKY-PDYGFDSH--VGYPT-AKHQQVIKE-----KGPSCIHRLTFRP 203
           TRD  ++       P    DS+   GYP     ++ +K+      G   I R ++  
Sbjct: 199 TRDAALKNWKFIERPGEDIDSNWGSGYPNDPVTKEYLKKNIDPVFGFPSIVRFSWST 255


>gi|145590574|ref|YP_001152576.1| ribonuclease HII [Pyrobaculum arsenaticum DSM 13514]
 gi|189043645|sp|A4WHQ7|RNH2_PYRAR RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|145282342|gb|ABP49924.1| RNase HII [Pyrobaculum arsenaticum DSM 13514]
          Length = 198

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 20/197 (10%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-ISI 83
           V GIDE GRG + GP+V+A ++ D   +   G+ DSK +S + RE LY KI   A+ ++ 
Sbjct: 5   VGGIDEAGRGPVVGPLVLAIVVGDSEALSKIGVRDSKSLSPRAREVLYGKILEMAVCVNY 64

Query: 84  SSASHQYIDKHNIH-KATLDAIYHAVENLQVIPRSAL------IDGRSIPEDLPC----Q 132
           +      ID H          + +A + +++ P          +      + L      +
Sbjct: 65  AVVEPYEIDLHVSRGMLNALEMKYAAKLMELCPADLYYVDSPDVKAARFGDGLSFLTGRR 124

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             ++ KG+++   +AAASI+AKV RDRL+ +  K+  D+G     GYP+ +  +     G
Sbjct: 125 VVSLHKGEAV-PQVAAASIVAKVVRDRLVEMLRKEVGDFG----SGYPSDRKTREWLRGG 179

Query: 193 PSCI--HRLTFRPLRNL 207
                  R ++  +  L
Sbjct: 180 RIPHECVRWSWETVGKL 196


>gi|17536263|ref|NP_495796.1| RNase H family member (rnh-2) [Caenorhabditis elegans]
 gi|11387113|sp|Q9U6P6|RNH2A_CAEEL RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
           AltName: Full=RNase H(35); AltName: Full=Ribonuclease HI
           large subunit; Short=RNase HI large subunit; AltName:
           Full=Ribonuclease HI subunit A
 gi|6010657|gb|AAF01208.1|AF181619_1 putative ribonuclease H2 large subunit [Caenorhabditis elegans]
 gi|15718212|emb|CAC70103.1| C. elegans protein T13H5.7, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 297

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 96/224 (42%), Gaps = 46/224 (20%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELY----- 72
            +  V GIDE GRG + GP+V AA I   +        G++DSK ++  KREE++     
Sbjct: 19  GIPCVLGIDEAGRGPVLGPMVYAAAISPLDQNVELKNLGVDDSKALNEAKREEIFNKMNE 78

Query: 73  ----EKITSSA-------IISISSASHQYIDKHNI-HKATLDAIYHAVE-NLQVIPRSAL 119
               ++I + A       +IS S    Q    + + H+A +  I  A+  N+ V+     
Sbjct: 79  DEDIQQIIAYALRCLSPELISCSMLKRQKYSLNEVSHEAAITLIRDALACNVNVVEIKVD 138

Query: 120 IDG------RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKY---- 168
             G        + +  P  +  V  K DS+   ++AASI AKVTRD  +R    +     
Sbjct: 139 TVGPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDSRLRNWQFREKNIK 198

Query: 169 ---PDYGFDSHVGYP----TAKHQQVIKE--KGPSCIHRLTFRP 203
                YG     GYP    T K  Q+  E   G   + R +++ 
Sbjct: 199 VPDAGYG----SGYPGDPNTKKFLQLSVEPVFGFCSLVRSSWKT 238


>gi|12845627|dbj|BAB26828.1| unnamed protein product [Mus musculus]
          Length = 301

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 80/213 (37%), Gaps = 34/213 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS--- 77
            V G+DE GRG + GP+V A          +     + DSK ++  +RE L+ K+     
Sbjct: 29  CVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGD 88

Query: 78  ---SA-------IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
               A       +IS S       + +++   T   +     +  V      +D   +PE
Sbjct: 89  FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDRNVNVTQVFVDTVGMPE 148

Query: 128 DL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSH 176
                        +     K DS+   ++AASI AKV RD+ ++     +   D   D  
Sbjct: 149 TYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYG 208

Query: 177 VGYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203
            GYP   K +  +++      G     R ++  
Sbjct: 209 SGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWST 241


>gi|18042143|gb|AAL57850.1|AF454825_1 ribonuclease HII [Leishmania donovani]
          Length = 474

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/115 (37%), Positives = 57/115 (49%), Gaps = 9/115 (7%)

Query: 100 TLDAIYHAVENLQVIPRSALIDGRSIP---------EDLPCQAFAVIKGDSISLSIAAAS 150
            L       +   + P   LIDG ++P           +      +I+GD  SLSIAAAS
Sbjct: 350 LLKGATEYFDFEPIQPPLVLIDGHAVPGPSYDYFTSVRIGGDVQPIIEGDKRSLSIAAAS 409

Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
            +AKVTRD LM      YP YGF  + GYP  +H + + + G   IHR T+RP R
Sbjct: 410 CLAKVTRDELMNYIDALYPGYGFRENKGYPVEQHMKYVTKNGLCPIHRKTYRPCR 464



 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 14/91 (15%)

Query: 27  AGIDEVGRGALAGPVVVAAII-------------LDPNNIPFGINDSKKISHKKREELYE 73
            G DE GRG LAGPVV AA+              L      F I DSK +S ++R+ ++ 
Sbjct: 136 IGCDEAGRGPLAGPVVGAAVSRIPVFSFNNEFDQLYEAPEQFQIFDSKSVSERQRDLVFA 195

Query: 74  KITSSAI-ISISSASHQYIDKHNIHKATLDA 103
            IT       I+S     +      +AT  A
Sbjct: 196 MITGHVDFFDIASCKKFVVHHCAGDEATSLA 226


>gi|296108883|ref|YP_003615832.1| ribonuclease HII [Methanocaldococcus infernus ME]
 gi|295433697|gb|ADG12868.1| ribonuclease HII [Methanocaldococcus infernus ME]
          Length = 223

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 28/177 (15%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86
            G+DE GRG + GP+VV A     +       DSKK+S +KRE+L +++    I  I   
Sbjct: 3   IGVDEAGRGPVIGPLVVCAY---ASEEEIEAEDSKKLSKEKREKLRKELEKKGIFEIVKV 59

Query: 87  SHQYIDKH----NIHKATLDAIYHAVENL----QVIPRSALIDGRSIPEDLPCQ------ 132
           S + +++     N+++  ++    A++NL     +      +D  S   +   +      
Sbjct: 60  SAEELNRLMKSKNLNEIEVELFAKAIKNLIEKHNLKDVEIYVDSCSPNREKFKRKLLSKL 119

Query: 133 -------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
                       K D     ++AASIIAK  RDR +    K Y D+G     GYP+ 
Sbjct: 120 RGLSIKDLIVEHKADEKYKVVSAASIIAKTERDREIEELKKIYGDFG----SGYPSD 172


>gi|222480377|ref|YP_002566614.1| ribonuclease HII [Halorubrum lacusprofundi ATCC 49239]
 gi|222453279|gb|ACM57544.1| ribonuclease HII [Halorubrum lacusprofundi ATCC 49239]
          Length = 234

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 82/216 (37%), Gaps = 41/216 (18%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS--AIISISS 85
           G+DE G+G + GP+V AA++ DP  +P  ++DSK+I+  +RE +  +I ++    + ++ 
Sbjct: 4   GVDEAGKGPVLGPMVAAAVLADPVALPADVDDSKRIAPSRRESIDAEIRATDAVAVGVAF 63

Query: 86  ASHQYIDKHNIHKATLDA--IYHAV-------------ENLQVIPRSALIDGRSIPEDLP 130
                ID+ +    TL       AV             E ++V+  +           L 
Sbjct: 64  VEPAEIDRPDTDMNTLTVRGQARAVRAALHGVVAVDLDEPIRVVADAGDTSEARFARRLG 123

Query: 131 -----------------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173
                                A    D     + AAS++AKV RD  M      YP Y  
Sbjct: 124 ESVADPDSDTTDTEHPEVDVSAAHGADEDDPMVGAASVVAKVARDERMADIDADYPAYD- 182

Query: 174 DSHVGYPTAK-----HQQVIKEKG-PSCIHRLTFRP 203
               GYP+        +  + + G      R ++  
Sbjct: 183 GLGSGYPSDPATRNFLRAYVNDHGNVPGCARRSWAT 218


>gi|297618794|ref|YP_003706899.1| ribonuclease HII [Methanococcus voltae A3]
 gi|297377771|gb|ADI35926.1| ribonuclease HII [Methanococcus voltae A3]
          Length = 264

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 86/222 (38%), Gaps = 40/222 (18%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK-------REELYEKITSS 78
           V G+DE GRG + GP+V+A ++L  +N                      RE LY++I   
Sbjct: 19  VVGLDEAGRGPVIGPMVIAGVLLKMDNKENAKTFYDLDLKDSKKLSKKKRETLYKEIQKL 78

Query: 79  AIISISSASHQYID-----------KHNIHKATLDAIYHAVENLQVIPRS----ALIDGR 123
           A +     + + ID           + N   + ++  Y  +  L    R       ID  
Sbjct: 79  AKVEKVIITAKEIDAQMNIINLNKIELNGFSSIINKFYKDIYGLDENKRDSGFLTYIDAC 138

Query: 124 SIPE------------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171
           S  E            +      A  K D     ++AASIIAKV RD ++   ++KY   
Sbjct: 139 SSNETSFSNQLKAKLINKNIDLIAEHKADDNYKIVSAASIIAKVNRDNIIDSYNEKYEAL 198

Query: 172 GFDSHVGYPT-AKHQQVIKEKG-----PSCIHRLTFRPLRNL 207
           G+    GYP+  K ++ +++          I R ++   + L
Sbjct: 199 GYTIGSGYPSDPKTKKFLRQYLEDNKELPDIVRFSWNTTKKL 240


>gi|297825539|ref|XP_002880652.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297326491|gb|EFH56911.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 296

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 90/212 (42%), Gaps = 33/212 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKIT-SSA 79
            + GIDE GRG + GP+V   +    +           DSK +  +KREELYE +    +
Sbjct: 15  CLMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEEKREELYENLKLDKS 74

Query: 80  I-ISISSASHQYI-------DKHNIHKATLD---AIYHAVENLQVIPRSALIDGRSIPED 128
           +  ++     + +       +K N+++ + +    +   V ++ V+   A +D    PE 
Sbjct: 75  LGWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPEK 134

Query: 129 LPCQ-------AFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--V 177
              +          V+  K DS+   ++ ASI+AKVTRDR +R    +      + +   
Sbjct: 135 YRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALREWLVEETGEDINRNFGS 194

Query: 178 GYP-TAKHQQVIKEK-----GPSCIHRLTFRP 203
           GYP   + +  + +      G   + R ++  
Sbjct: 195 GYPGDPETKAWLVQHKHSVFGFPSLVRFSWGT 226


>gi|109123571|ref|XP_001109423.1| PREDICTED: ribonuclease H2 subunit A isoform 2 [Macaca mulatta]
          Length = 300

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 81/213 (38%), Gaps = 34/213 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS--- 77
            V G+DE GRG + GP+V A          +     + DSK +   +RE L+ K+     
Sbjct: 29  CVLGVDEAGRGPVLGPMVYAICYCPLSHLADLEALKVADSKTLLESERERLFAKMEENRD 88

Query: 78  ---SA-------IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
               A       +IS S       + +++   T   +     +  V      +D   +PE
Sbjct: 89  FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPE 148

Query: 128 DL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSH 176
                        +     K D++   ++AASI AKV RD+ ++     +K  D   D  
Sbjct: 149 TYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWKFVEKLQDSDTDYG 208

Query: 177 VGYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203
            GYP   K +  +KE      G     R ++R 
Sbjct: 209 SGYPNDPKTKVWLKEHVEPVFGFPQFVRFSWRT 241


>gi|323452074|gb|EGB07949.1| hypothetical protein AURANDRAFT_6827 [Aureococcus anophagefferens]
          Length = 156

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 85/164 (51%), Gaps = 11/164 (6%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI-SHKKREELYEKITSSA--IISIS 84
           G+DEVGRG LAGPVV  A  L P      + DSK++ +   RE +Y ++ ++     +++
Sbjct: 1   GVDEVGRGCLAGPVVTCACYLPPGAEIDDLTDSKQLATEDLREAVYARLLATPGLRFALA 60

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144
            A    +D+ NI +A L A+  A E L          G             + KGD+   
Sbjct: 61  KAEAPVVDELNILQANLQAMRTASEAL---CDRLAAGGER-----GGDLEVLDKGDASVS 112

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188
           +I+AAS+IAKVTRDR+M      YP+Y + S+   P A  ++++
Sbjct: 113 AISAASVIAKVTRDRIMNALAGDYPEYDWASNKQRPVAVFREIL 156


>gi|296233041|ref|XP_002761859.1| PREDICTED: ribonuclease H2 subunit A-like [Callithrix jacchus]
          Length = 278

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 20/195 (10%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSS-- 78
            V G+DE GRG + GP+V A          +     + DSK +S  +RE L  K+     
Sbjct: 29  CVVGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERERLLGKMQEDGN 88

Query: 79  -AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-CQAFAV 136
               ++   S   I    + + +L      V+ + +         + + +  P  +    
Sbjct: 89  FVGWALDVLSPNLISTSMLGRFSLSRKVVFVDTVGMPETY----QKRLQQSFPGIEVTVK 144

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHVGYPT-AKHQQVIKEK-- 191
            K D++   ++AASI AKV RD+ ++     +K  D   D   GYP   K +  +KE   
Sbjct: 145 AKADALYPVVSAASICAKVARDQAVKNWQFVEKLQDLDTDYGSGYPNDPKTKVWLKEHVE 204

Query: 192 ---GPSCIHRLTFRP 203
              G     R ++R 
Sbjct: 205 PVFGFPQFVRFSWRT 219


>gi|116754092|ref|YP_843210.1| ribonuclease HII [Methanosaeta thermophila PT]
 gi|121694604|sp|A0B796|RNH2_METTP RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|116665543|gb|ABK14570.1| RNase HII [Methanosaeta thermophila PT]
          Length = 211

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 29/210 (13%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS 78
           M  + G+DE G+G + G + VA ++    +I      G+ DSK +S  +RE +  KI S 
Sbjct: 1   MMLILGVDEAGKGPVIGSMFVAGVVFSEEDIFDLAACGVKDSKLLSPTRRESMERKILSI 60

Query: 79  AIIS-ISSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIP--------- 126
           A  S +   + Q ID   +  +  + +  A   +  ++    A++D   +          
Sbjct: 61  ARESFVLEVTAQQIDDLRMVMSMNEIMVRAHSRVVSRLQADRAILDAADVNAERFAQRVR 120

Query: 127 --EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK- 183
                P    A    D   + +AAASIIAKV RDR +R         G     GYP+   
Sbjct: 121 EVSGKPIDILAEHNADRKHIVVAAASIIAKVARDRSIRDLEA---ALGRPLGSGYPSDPA 177

Query: 184 ----HQQVIKEKG--PSCIHRLTFRPLRNL 207
                ++ I+E G  PS + R ++   + L
Sbjct: 178 TVRFLKEWIEENGDLPSFV-RKSWSTAQRL 206


>gi|301771221|ref|XP_002921051.1| PREDICTED: ribonuclease H2 subunit A-like [Ailuropoda melanoleuca]
 gi|281353030|gb|EFB28614.1| hypothetical protein PANDA_009861 [Ailuropoda melanoleuca]
          Length = 299

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 34/217 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS--- 77
            V G+DE GRG + GP+V A          +     + DSK +S  +R+ L+ K+     
Sbjct: 29  CVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFVKMEEDGD 88

Query: 78  ---SA-------IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
               A       +IS S       + +++   T   +     +  V      +D    PE
Sbjct: 89  FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGPPE 148

Query: 128 DL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSH 176
                        +     K D++   ++AASI AKV RD+ ++  H  +   D   D  
Sbjct: 149 TYQERLQERFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWHFVETLQDLDADYG 208

Query: 177 VGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207
            GYP   K +  +++      G     R ++R  +++
Sbjct: 209 SGYPNDPKTKVWLRKHVEPVFGFPQFVRFSWRTAQSI 245


>gi|327311983|ref|YP_004338880.1| ribonuclease HII [Thermoproteus uzoniensis 768-20]
 gi|326948462|gb|AEA13568.1| ribonuclease HII [Thermoproteus uzoniensis 768-20]
          Length = 203

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 24/201 (11%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSA-II 81
             VAGIDE GRG + GP+V+A +  +   +   G+ DSK++S K RE LY  I  SA  +
Sbjct: 1   MVVAGIDEAGRGPVVGPMVLAIVAGNEKALRALGVRDSKELSRKARERLYPLILKSAECV 60

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC---------- 131
           +        ID+                 L  +   A +     P+  P           
Sbjct: 61  NYVVLEPHVIDEWAASHKLNLLEAEEAAKLMRLCD-ADVYYVDSPDPKPERFSELLSRMS 119

Query: 132 --QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA-KHQQVI 188
             +  A+ K +     +AAASI+AKV RDRL+ +   +  D+G     GYP+  K    +
Sbjct: 120 GRRVVAMNKAE-RVPQVAAASIVAKVVRDRLVDMLRSEMGDFG----SGYPSDSKTISAL 174

Query: 189 K--EKGPSCIHRLTFRPLRNL 207
           +  +    CI R ++  L+ L
Sbjct: 175 RSGKIAVECI-RHSWGTLKRL 194


>gi|255994295|ref|ZP_05427430.1| ribonuclease HII [Eubacterium saphenum ATCC 49989]
 gi|255993008|gb|EEU03097.1| ribonuclease HII [Eubacterium saphenum ATCC 49989]
          Length = 283

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 111 LQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170
           L     + L+D   + +D+     ++I+GD  S SIAA+SI+AKV RD +M+ A + YP 
Sbjct: 192 LNKDEITLLVDAVKL-DDVGTPVHSIIRGDEKSYSIAASSIVAKVIRDEMMKKADEMYPG 250

Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           Y F S+ GY T +H + IK  G S IHR TF
Sbjct: 251 YDFKSNKGYGTKRHYEGIKLYGISDIHRKTF 281



 Score = 99.0 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 1/93 (1%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85
           AG+DEVGRG +AGPVV A + +  ++   GI+DSKK++   R +L++KI   A  I I  
Sbjct: 32  AGMDEVGRGPIAGPVVSACVCMKADSEILGIDDSKKVTKAGRIKLFDKIIEDARAIGIGI 91

Query: 86  ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118
             H  ID+ NI  AT  A+  A+ ++  + R+ 
Sbjct: 92  VPHNIIDRINILNATKLAMRAALYDMLSVKRAV 124


>gi|126459394|ref|YP_001055672.1| ribonuclease HII [Pyrobaculum calidifontis JCM 11548]
 gi|126249115|gb|ABO08206.1| RNase HII [Pyrobaculum calidifontis JCM 11548]
          Length = 207

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 54/204 (26%), Positives = 93/204 (45%), Gaps = 26/204 (12%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKI 75
           ++    +  + G+DE GRG L GP+V+A ++ D + +   G+ DSK +S   RE ++ ++
Sbjct: 7   LLSRPYLTVIGGVDEAGRGPLVGPLVIAVVVGDSDVLLGVGVRDSKALSPGARERVFARV 66

Query: 76  TSSAII---------------SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
              A                 S    +   ID      AT  A  + V++  V P     
Sbjct: 67  LEVAECVNYIVVEPHIVDMYTSKGLLNALEIDYTAKLLATCPADVYYVDSPDVKPER--- 123

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
            G ++      +  A+ KG+     +AAASI+AKV RDRL+ +  ++  D+G     GYP
Sbjct: 124 YGSALSMATGKRIVALNKGE-RVPQVAAASIVAKVVRDRLIDLLKREVGDFG----SGYP 178

Query: 181 TAKHQQVIKEKG--PSCIHRLTFR 202
           +        ++G  PS   R +++
Sbjct: 179 SDPRTVEFVKRGLVPSECIRHSWK 202


>gi|156101113|ref|XP_001616250.1| ribonuclease H1 large subunit  [Plasmodium vivax SaI-1]
 gi|148805124|gb|EDL46523.1| ribonuclease H1 large subunit , putative [Plasmodium vivax]
          Length = 288

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 54/214 (25%), Positives = 88/214 (41%), Gaps = 34/214 (15%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI--- 80
           GIDE GRG + GP+V A    +  +        I+DSKKIS   RE ++ K+ +S++   
Sbjct: 20  GIDEAGRGPVLGPMVYAGFYCNKEHEKLLKEMKIDDSKKISEADREMMFHKLNNSSLPFG 79

Query: 81  ISISSASHQYI-------DKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLP 130
             I     Q I        K+N+++ + D     ++++           +D    P    
Sbjct: 80  WRIHVLMPQDISAKMLKKQKYNLNEISHDTAISIIDHVISRGCNLTEVFVDTVGKPSVYE 139

Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS--HVGY 179
            +   +          K DS+   ++AASI AKVTRD L++    + P    D     GY
Sbjct: 140 EKLKRLFPHIKCTVKEKADSLYPVVSAASICAKVTRDFLIKKWKYEEPLVNIDKGFGSGY 199

Query: 180 P-TAKHQQVIKE-----KGPSCIHRLTFRPLRNL 207
           P     +  +K       G   I R ++    N+
Sbjct: 200 PGDPITKNFLKNNFDTVFGFPSIVRFSWSTADNM 233


>gi|255549406|ref|XP_002515756.1| ribonuclease hi large subunit, putative [Ricinus communis]
 gi|223545084|gb|EEF46595.1| ribonuclease hi large subunit, putative [Ricinus communis]
          Length = 299

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 53/212 (25%), Positives = 88/212 (41%), Gaps = 33/212 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI 80
            + GIDE GRG + GP+V   +    +           DSK +   KREEL+E + ++  
Sbjct: 17  CIMGIDEAGRGPVLGPMVYGCLYCARSYERTLSTLSFADSKTLKEDKREELFENLKANES 76

Query: 81  ISIS---------SASHQYIDKHNIHKATLDAIYHA---VENLQVIPRSALIDGR----- 123
           I  +         SA     +K N+++ + ++       V N  V+     +D       
Sbjct: 77  IGWAVDVIDPRELSAKMLQKNKINLNEISHESAIGLITRVLNEGVLLTQVYLDTVGDAEK 136

Query: 124 ---SIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--V 177
               + E  P   F V  K DS+   ++ ASI+AKVTRDR +R    +    G   +   
Sbjct: 137 YRIKLSERFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALRNWVLEETAEGISRNFGS 196

Query: 178 GYP-TAKHQQVIKEK-----GPSCIHRLTFRP 203
           GYP   + +  +K+      G   + R ++  
Sbjct: 197 GYPGDPETKAWLKQHKHQVFGFPTLVRFSWGT 228


>gi|218887966|ref|YP_002437287.1| ribonuclease H [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758920|gb|ACL09819.1| Ribonuclease H [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 292

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 33/73 (45%), Positives = 46/73 (63%)

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
             AV+ GD++  +++AASI+AK  RD+LM    +++P YG   H GY TA+H   I E G
Sbjct: 209 QRAVVGGDALVPAVSAASILAKTFRDQLMTALDRRFPHYGLAVHKGYGTAEHMAAIAEHG 268

Query: 193 PSCIHRLTFRPLR 205
           P   HR TFR +R
Sbjct: 269 PCPQHRATFRGVR 281



 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 11/100 (11%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNN----------IPFGINDSKKISHKKREELYEK 74
           P  GIDE GRG LAGPVV AA+IL P+              G+ DSKK++  KRE L  +
Sbjct: 17  PYVGIDEAGRGCLAGPVVAAAVILPPHADAATLADLLPDLAGLTDSKKLTAAKREALAPR 76

Query: 75  ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQV 113
           I   A+   +     + I++ NI +AT  A++ AV  L+ 
Sbjct: 77  IRQHAVAWGLGVVWPRDIERINILQATFHAMWRAVRFLRP 116


>gi|145329613|ref|NP_001077956.1| ribonuclease HII family protein [Arabidopsis thaliana]
 gi|330252564|gb|AEC07658.1| Ribonuclease H2 subunit A [Arabidopsis thaliana]
          Length = 277

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 83/202 (41%), Gaps = 32/202 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKIT-SSA 79
            + GIDE GRG + GP+V   +    +           DSK +  +KREELYE +    +
Sbjct: 15  CLMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEEKREELYESLKLDKS 74

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ------ 132
           +  ++     + +    + K         V ++ V+   A +D    P+    +      
Sbjct: 75  LGWAVDVIDPRELSAKMLAK---------VLDMGVLLTEAYLDTVGDPDKYRIKLSERFP 125

Query: 133 -AFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--VGYP-TAKHQQ 186
               V+  K DS+   ++ ASI+AKVTRDR ++    +      + +   GYP   + + 
Sbjct: 126 SIKFVVSKKADSLFPIVSGASIVAKVTRDRALKEWLVEETGEDINRNFGSGYPGDPETKA 185

Query: 187 VIKEK-----GPSCIHRLTFRP 203
            + +      G   + R ++  
Sbjct: 186 WLVQHKHSVFGFPSLVRFSWGT 207


>gi|19173027|ref|NP_597578.1| BELONGS TO THE RIBONUCLEASE HII FAMILY [Encephalitozoon cuniculi
           GB-M1]
 gi|19168694|emb|CAD26213.1| BELONGS TO THE RIBONUCLEASE HII FAMILY [Encephalitozoon cuniculi
           GB-M1]
          Length = 239

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 87/208 (41%), Gaps = 32/208 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-IS 82
            V GIDE GRG + G +V  A+++    +   G  DSK ++  +R   ++ I       +
Sbjct: 18  VVVGIDEAGRGPVVGYMVYGALVVPRGVLEDVGFKDSKVLTPAQRYNFFQMIKKKGFGYA 77

Query: 83  ISSASHQYIDKHN------IHKATLDAIYHAVENLQVIP---RSALIDG--------RSI 125
              +   YI +        +++ ++ ++   ++ +Q       +  +D           +
Sbjct: 78  YHCSHPDYITEMMQVRSVSLNEVSIGSVLRILDEVQSKCRRVDTIYVDALGDCRKYKERL 137

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKH 184
            +D P +     + DS    ++ ASI+AKV RD L+         +G D   GYP+  + 
Sbjct: 138 EKDYPYRFVVEERADSKFQVVSGASIVAKVQRDMLISE-------FGEDLGSGYPSDPET 190

Query: 185 QQVIKE-----KGPSCIHRLTFRPLRNL 207
            + +++      G     R ++  ++ +
Sbjct: 191 IRWLRKNINVVFGFPPGVRYSWATVKKM 218


>gi|18400719|ref|NP_565584.1| ribonuclease HII family protein [Arabidopsis thaliana]
 gi|49066054|sp|Q9SEZ6|RNH2A_ARATH RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
           AltName: Full=Ribonuclease HI large subunit; Short=RNase
           HI large subunit; AltName: Full=Ribonuclease HI subunit
           A
 gi|26450346|dbj|BAC42289.1| putative ribonuclease large subunit [Arabidopsis thaliana]
 gi|28973385|gb|AAO64017.1| putative ribonuclease large subunit [Arabidopsis thaliana]
 gi|330252563|gb|AEC07657.1| Ribonuclease H2 subunit A [Arabidopsis thaliana]
          Length = 296

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 90/212 (42%), Gaps = 33/212 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKIT-SSA 79
            + GIDE GRG + GP+V   +    +           DSK +  +KREELYE +    +
Sbjct: 15  CLMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEEKREELYESLKLDKS 74

Query: 80  I-ISISSASHQYI-------DKHNIHKATLD---AIYHAVENLQVIPRSALIDGRSIPED 128
           +  ++     + +       +K N+++ + +    +   V ++ V+   A +D    P+ 
Sbjct: 75  LGWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPDK 134

Query: 129 LPCQ-------AFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--V 177
              +          V+  K DS+   ++ ASI+AKVTRDR ++    +      + +   
Sbjct: 135 YRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALKEWLVEETGEDINRNFGS 194

Query: 178 GYP-TAKHQQVIKEK-----GPSCIHRLTFRP 203
           GYP   + +  + +      G   + R ++  
Sbjct: 195 GYPGDPETKAWLVQHKHSVFGFPSLVRFSWGT 226


>gi|56754417|gb|AAW25396.1| SJCHGC03278 protein [Schistosoma japonicum]
          Length = 289

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 90/212 (42%), Gaps = 37/212 (17%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII-- 81
           GIDE GRG + GP+V A  +   N +      G+ DSK +S  +RE+L + + +      
Sbjct: 3   GIDEAGRGPVLGPMVYACALSPINRLNELTTIGLADSKTLSEIQREKLLQDMLNKCDWMS 62

Query: 82  -SISSASHQYIDKHNI--HKATLDAIYH--AVENLQVIPR------SALIDGRSIPEDLP 130
             +   S  YI +  +   K +L+ I H  A++ +Q +           +D     E   
Sbjct: 63  AVVHVISPVYITEKMLDRSKTSLNVISHDSAIQLIQTVLDSGINLVEVYVDTVGKAEHYE 122

Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY----PDYGFDSHV 177
            +   +          K D     ++AASI AKVTRDR++++  K+     PD G     
Sbjct: 123 AKLQNLFPQLKIRVESKADDTYPIVSAASIFAKVTRDRILQMWPKEERGNVPD-GTGLGS 181

Query: 178 GYP----TAKHQQVIKE--KGPSCIHRLTFRP 203
           GYP    T  + +   +   G   + R ++  
Sbjct: 182 GYPGDPVTKSYLRACLDPVFGFPSLVRSSWST 213


>gi|126466172|ref|YP_001041281.1| RNase HII [Staphylothermus marinus F1]
 gi|126014995|gb|ABN70373.1| RNase HII [Staphylothermus marinus F1]
          Length = 244

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 91/207 (43%), Gaps = 31/207 (14%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI-I 81
            GIDE GRG L G +V+A ++++ + I      G+ DSK+++   R  + +KI   A  +
Sbjct: 10  IGIDEAGRGPLIGDLVIAVLMINRDKIKNLISIGVRDSKQLTRHTRLIMAKKILKLADNV 69

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPCQAFA- 135
           SI   S + ID +NI+K   + I  A+  L  I          ID     ++      + 
Sbjct: 70  SIIYISPEMIDSYNINKIIAEKIIIALRMLSQIINHYRTVSIYIDEIKGYKNYILTNLSK 129

Query: 136 ----------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK-H 184
                         D     ++AASI+AK  RD+ +    K Y ++G     GYP+ K  
Sbjct: 130 YINNIEEYVMEPNADQKYPVVSAASILAKTIRDKNIDFLKKIYGNFG----SGYPSDKIT 185

Query: 185 QQVI-----KEKGPSCIHRLTFRPLRN 206
            + +     +E  P  I R T+  LR 
Sbjct: 186 IKWLTKTYNEENEPPLIIRRTWSTLRK 212


>gi|242082852|ref|XP_002441851.1| hypothetical protein SORBIDRAFT_08g003480 [Sorghum bicolor]
 gi|241942544|gb|EES15689.1| hypothetical protein SORBIDRAFT_08g003480 [Sorghum bicolor]
          Length = 297

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 86/220 (39%), Gaps = 33/220 (15%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK 74
                  + GIDE GRG + GP+V   +    +           DSK +  ++REEL+E 
Sbjct: 8   WATKEPCLMGIDEAGRGPVLGPMVYGCMYCARSYNNTLSTLKFADSKTLKEEQREELFES 67

Query: 75  ITSSAIISIS---------SASHQYIDKHNIHKATLD---AIYHAVENLQVIPRSALIDG 122
           +  ++ I            SA      K N+++ + +    +   V ++ ++     ID 
Sbjct: 68  LKVNSSIGWEVDVICPKDLSAKMLKKSKVNLNEISHNSAMGLVRKVLDMGILLAEVYIDT 127

Query: 123 RSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIA--HKKYPDY 171
              PE    +              K DS+   ++ ASI+AKVTRDR +R     +     
Sbjct: 128 VGDPEKYRIKLTEKFPGIKFVVAKKADSLYPVVSGASIVAKVTRDRALRNWVFDETALSL 187

Query: 172 GFDSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLR 205
              +  GYP     +Q +++      G   + R ++   +
Sbjct: 188 HMKTGSGYPGDPDTKQWLEDHKHPVFGFPTLVRFSWGTCK 227


>gi|149037818|gb|EDL92178.1| ribonuclease H2, large subunit, isoform CRA_b [Rattus norvegicus]
 gi|149037821|gb|EDL92181.1| ribonuclease H2, large subunit, isoform CRA_b [Rattus norvegicus]
          Length = 282

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 76/196 (38%), Gaps = 29/196 (14%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS--- 77
            V G+DE GRG + GP+V A          +     + DSK ++  +RE L+ K+     
Sbjct: 29  CVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGD 88

Query: 78  ---SA-------IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
               A       +IS S       + +++   T   +     +  V      +D   +PE
Sbjct: 89  FVGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQVFVDTVGMPE 148

Query: 128 DL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSH 176
                        +     K DS+   ++AASIIAKV RD+ ++     +       D  
Sbjct: 149 TYQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQFVESLQGLDSDYG 208

Query: 177 VGYPT-AKHQQVIKEK 191
            GYP   K +  +++ 
Sbjct: 209 SGYPNDPKTKAWLRKH 224


>gi|194213064|ref|XP_001495257.2| PREDICTED: similar to Ribonuclease H2 subunit A (RNase H2 subunit
           A) (Ribonuclease HI subunit A) (Ribonuclease HI large
           subunit) (RNase HI large subunit) (RNase H(35))
           (Aicardi-Goutieres syndrome 4 protein) (AGS4) [Equus
           caballus]
          Length = 299

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 83/214 (38%), Gaps = 34/214 (15%)

Query: 28  GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS------ 77
           G+DE GRG + GP+V A          +     + DSK +S  +R+ L+ ++        
Sbjct: 32  GVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFARMKEDGDFVG 91

Query: 78  SA-------IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL- 129
            A       +IS S       + +++   T   +     +  V      +D   +PE   
Sbjct: 92  WALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLVQYALDQGVKVAQVFVDTVGMPETYQ 151

Query: 130 --------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHVGY 179
                     +     K DS+   ++AASI AKV RD+ ++     +K  D   D   GY
Sbjct: 152 QRLQQRFPGIEVTVKAKADSLYPVVSAASICAKVARDQAVKNWKFVEKLQDSDTDYGSGY 211

Query: 180 PT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207
           P   K +  ++       G     R ++R  +++
Sbjct: 212 PNDPKTKAWLRRHVEPVFGFPQFVRFSWRTAQSI 245


>gi|294890217|ref|XP_002773106.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC
           50983]
 gi|239878004|gb|EER04922.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC
           50983]
          Length = 350

 Score =  117 bits (295), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 92/228 (40%), Gaps = 47/228 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI--- 80
           GIDE GRG + GP+V  A I D          G NDSK+++  KR EL+E I + A+   
Sbjct: 56  GIDEAGRGPVFGPMVYGAAISDIRKSDALGKMGFNDSKQLTEAKRSELFEGIHNEALKDD 115

Query: 81  ----ISISSASHQYI-------DKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIP 126
                ++   +   I       +K N+++ + +     +E+     +  +   +D    P
Sbjct: 116 GVLGFAVHVLTAHEISTKMLRRNKVNLNRISHETAIGLIEHALSEGINVKEVYVDTVGDP 175

Query: 127 EDLPCQAFAVI------------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP-DYGF 173
           E    +  ++             K D+I    +AASI AKV RDRL+      YP   G 
Sbjct: 176 ERYQNKLSSIFKRRGVDTIVVCKKADAIYPICSAASICAKVIRDRLVEEEISYYPEGEGV 235

Query: 174 DS-------HVGYP-TAKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208
            +         GYP  A+  + +++            R ++  +  + 
Sbjct: 236 ATLCRSVKVGSGYPGDAQTVEWLEKVVDPVFLFPRQIRFSWSTIEEIE 283


>gi|308159908|gb|EFO62424.1| Ribonuclease HI, large sub [Giardia lamblia P15]
          Length = 243

 Score =  117 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 44/216 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELYEKI---- 75
           + GIDE GRG + GP+V     +             G+ DSK +S   RE +Y K+    
Sbjct: 2   IVGIDEAGRGPVCGPLVYGIAWMPAEVYQTGILEKLGVTDSKALSADAREHIYSKLHDLP 61

Query: 76  -----TSSAIISISSASHQYI--DKHNIHKATLDAIYHAVENL--QVIPRSALIDGRS-- 124
                 ++AI+S    S   +   K +++  + +A    +  L          ID  S  
Sbjct: 62  KEDFGCNTAIVSADQISRAMLAPHKTSLNLLSFEAARSLLYQLFTSYEIEHVYIDLVSPE 121

Query: 125 ------IPEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                 I E +P  A  +  K D+      AASIIAKVTRD+ ++      P +G     
Sbjct: 122 SQYATYIHELMPNIALTICAKADAKYPITGAASIIAKVTRDKHIK------PQWG----S 171

Query: 178 GYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207
           GYP+  K ++ + +      G     R ++  ++ +
Sbjct: 172 GYPSDPKTKEYLDKTCHSIYGFPTHIRHSWETIKRI 207


>gi|299473412|emb|CBN77810.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 320

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 81/220 (36%), Gaps = 36/220 (16%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSSA 79
             + GIDE GRG + GP+   A       D      G +DSK ++  +R  L+++I  + 
Sbjct: 49  GVILGIDEAGRGPVLGPMTYGAAYWSCADDKEMSAKGFDDSKALTSDQRTSLFDRIDRTP 108

Query: 80  IISISS--ASHQYIDKHNIHK-------ATLDAI---YHAVENLQVIPRSALIDGRSIPE 127
            +       S + +      K        + DA      AV+   V      +D    P 
Sbjct: 109 EVGWVLRLISARELSDKMCRKVPYSLNVISHDAAAELIRAVQARGVKVTQVYVDTVGDPA 168

Query: 128 DLPCQAFAVI----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173
               +               K DS+  + +AASI+AKVTRDR++       P+  F    
Sbjct: 169 FYQSKLEKEFGKGIKFVVAKKADSLYKTASAASIVAKVTRDRIVEGWQWSEPNLDFSEDR 228

Query: 174 DSHVGYPTAKHQQVIKE------KGPSCIHRLTFRPLRNL 207
               GYP  +  +   E       G   I R ++   + +
Sbjct: 229 KYGSGYPGDEKCKKWLESNVDPVFGFPDICRFSWGTTKEI 268


>gi|110668982|ref|YP_658793.1| ribonuclease HII [Haloquadratum walsbyi DSM 16790]
 gi|109626729|emb|CAJ53196.1| ribonuclease HII [Haloquadratum walsbyi DSM 16790]
          Length = 231

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 87/220 (39%), Gaps = 36/220 (16%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82
           M P  G DE G+G + GP++ AA+   P+ IP  I+DSK+++   R  L E + S   I 
Sbjct: 1   MGPRIGSDEAGKGPVLGPMICAAVHASPSVIPDDIDDSKRLNASTRRRLRETLESHTAID 60

Query: 83  IS--SASHQYID--KHNIHKATLDAIYHAVENLQVIPRS---ALIDGRSIPEDLP----- 130
           I         ID  + +++  TL+    A+ +L  +       + D   + E        
Sbjct: 61  IGTAVIPVAQIDDPRTDMNTLTLNGHIAAIADLDGVATFNGTIVADASDVSESRFATRLE 120

Query: 131 -----------------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173
                            C   A    D     +AAASIIAK  RD  +    K+Y   G 
Sbjct: 121 SRLIDECNGIDTIALNHCSIEARHGADEDDPLVAAASIIAKARRDEQITALAKEYETTG- 179

Query: 174 DSHVGYPTAKHQQV-----IKEKG-PSCIHRLTFRPLRNL 207
               GYP+ +  +      I+  G      R ++  + ++
Sbjct: 180 PIGSGYPSDQKTRAFLRRYIRTNGKVPACARRSWATVDDI 219


>gi|303388657|ref|XP_003072562.1| ribonuclease HII [Encephalitozoon intestinalis ATCC 50506]
 gi|303301703|gb|ADM11202.1| ribonuclease HII [Encephalitozoon intestinalis ATCC 50506]
          Length = 239

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 84/219 (38%), Gaps = 32/219 (14%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELY 72
             + + E +   V GIDE GRG + G +V  A+I     +   G  DSK ++  +R + +
Sbjct: 7   FFSSLEEISEEVVVGIDEAGRGPVIGYMVYGALISSRTTLENTGFRDSKVLTSGQRHDFF 66

Query: 73  EKITSSAIISISSAS-HQYIDKHNIHKATLDAIYHAVENLQV---------IPRSALIDG 122
           + I       +   +   YI +    K+T       +  L++            +  +D 
Sbjct: 67  KMIKERGFGYVYHCTHPDYITEMMQVKSTSLNEISLISVLKILEEIKAKCKKVDTVYVDA 126

Query: 123 --------RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174
                     + E  P +     K DS    ++ ASI+AKV RD L+         +G +
Sbjct: 127 LGDCEKYKARLEEAYPYKFVIEEKADSKFQIVSGASIVAKVQRDILIS-------QFGSN 179

Query: 175 SHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207
              GYP+     + +K       G     R ++  ++ +
Sbjct: 180 LGSGYPSDPDTIKWLKRNANAVFGFPPGVRYSWATVKRI 218


>gi|48478335|ref|YP_024041.1| ribonuclease HII [Picrophilus torridus DSM 9790]
 gi|73917829|sp|Q6KZK4|RNH2_PICTO RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|48430983|gb|AAT43848.1| ribonuclease HII [Picrophilus torridus DSM 9790]
          Length = 199

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 77/202 (38%), Gaps = 26/202 (12%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS- 82
             V GIDE GRG + GP+V+A +    ++I F +NDSK ++  KR  ++  +  S +   
Sbjct: 1   MCVCGIDEAGRGPVIGPMVMAMVC--ADDINFYVNDSKLLTRNKRSLIFNDV--SGLYHK 56

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVEN--LQVIPRSALIDGRSIPE---------DLPC 131
               +   ID      +  +      E   L+       ID   + E             
Sbjct: 57  YYIINPAEIDDAVKKHSLNNLEEQYAEKLILKAECEKIYIDCFDVNESRLERILKDRTGK 116

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +       D     ++AASIIAKV RD  +      Y D+G     GYP+        E 
Sbjct: 117 EVICRHHADRDIKIVSAASIIAKVLRDNEIEKLKSIYGDFG----SGYPSDPKTLRFLEH 172

Query: 192 GPS------CIHRLTFRPLRNL 207
                     I R  ++  +NL
Sbjct: 173 SIINHDNIDNIVRKEWKTYKNL 194


>gi|159467162|ref|XP_001691767.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158279113|gb|EDP04875.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 266

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/209 (24%), Positives = 87/209 (41%), Gaps = 27/209 (12%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREELYEKITSSAIIS 82
            + G+DE GRG + GP+V A      +      G  DSK ++H+ RE+L++ I + + + 
Sbjct: 36  CILGVDEAGRGPVLGPMVYACAFTSVSTDISSRGYADSKTLTHETREKLFKAIDADSGVG 95

Query: 83  IS--SASHQYIDKHNI-----------HKATLDAIYHAVENLQVIPRSALIDG----RSI 125
                 S Q+I  H +             AT   I  A+E+   +    + D       +
Sbjct: 96  WVAHIMSAQFISGHMLGRDKTSLNALAFDATCAIIRRALESGANVYVDTVGDADRHRDRL 155

Query: 126 PEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA-K 183
               P   F V  K DS+   ++AASI+AKV RD+ +  + K     G +   GYP    
Sbjct: 156 SRAFPGLDFTVCPKADSLYPIVSAASIVAKVIRDKSLTDSQKSLGLTG-EVGTGYPGDSA 214

Query: 184 HQQVIKEK-----GPSCIHRLTFRPLRNL 207
               +K+      G   + R ++     +
Sbjct: 215 TTTWLKQHMHPLWGFPRLVRHSWETCSRM 243


>gi|307198751|gb|EFN79554.1| Ribonuclease H2 subunit A [Harpegnathos saltator]
          Length = 337

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 80/218 (36%), Gaps = 42/218 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI--- 80
           G+DE GRG + GP+V        +     +  G  DSK ++ KKR+E+++ I        
Sbjct: 66  GVDEAGRGPVLGPMVYGISYAPLSRKQLLVELGCADSKSLTEKKRDEIFDGICEHKDCIG 125

Query: 81  ISISSASHQYIDKHN----------IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            ++ + S   I                  +   +  A     V      +D    PE   
Sbjct: 126 WAVEAISPNVIANSMYRRTKVSLNETSMVSATELIKAAIEAGVNVAEVYVDTVGKPETYQ 185

Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIA-----HKKYP-DYGFDS 175
            +  AV          K DS    ++AASI AKV+RD  +R          +P +YG   
Sbjct: 186 ARLKAVFPGVKVVVAKKADSTYPIVSAASICAKVSRDHAIRAWRFREVDVAFPSEYG--- 242

Query: 176 HVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207
             GYPT    ++ +        G   + R ++     +
Sbjct: 243 -SGYPTDPVTKKWLSANVDGVFGFPQLVRFSWSTAEQI 279


>gi|301100786|ref|XP_002899482.1| ribonuclease H2 subunit A, putative [Phytophthora infestans T30-4]
 gi|262103790|gb|EEY61842.1| ribonuclease H2 subunit A, putative [Phytophthora infestans T30-4]
          Length = 791

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 34/211 (16%)

Query: 6   IPERPHFELEAMVREK-------NMWPVAGIDEVGRGALAGPVVVAA----IILDPNNIP 54
           +P+RP+ +   ++           +  + GIDE GRG + GP+V  A    + ++     
Sbjct: 1   MPDRPNLQRTLLLASDCPASCLNGVPVMLGIDEAGRGPVMGPMVYGAAYWPVAVNDAMCA 60

Query: 55  FGINDSKKISHKKREELYEKITSSA--IISISSASHQYI-DKHNIHKATLDAIYHA---- 107
            G +DSK +S + R +L+EK+ S+      +   S   I DK     + L+ +       
Sbjct: 61  LGFDDSKALSAESRAQLFEKMQSTEGLGWIVRLISAAEISDKMQRQTSNLNEMSRDAAIQ 120

Query: 108 ----VENLQVIPRSALIDGRSIPEDLP----------CQAFAVIKGDSISLSIAAASIIA 153
               V+N   + +   +D    P               +     K DS+   ++AASI A
Sbjct: 121 LINEVQNKGAVVKKVFVDTVGDPRWYQSFLTKHFNGTIEFRVEKKADSLFKVVSAASIAA 180

Query: 154 KVTRDRLMRIAHKKYPDYGF--DSHVGYPTA 182
           KVTRDR++     + P      D   GYP+ 
Sbjct: 181 KVTRDRVISDWMWESPALELPTDFGSGYPSD 211


>gi|21593541|gb|AAM65508.1| putative ribonuclease large subunit [Arabidopsis thaliana]
          Length = 280

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 89/210 (42%), Gaps = 33/210 (15%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKIT-SSAI- 80
            GIDE GRG + GP+V   +    +           DSK +  +KRE+LYE +    ++ 
Sbjct: 1   MGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEEKREDLYESLKLDKSLG 60

Query: 81  ISISSASHQYI-------DKHNIHKATLD---AIYHAVENLQVIPRSALIDGRSIPEDLP 130
            ++     + +       +K N+++ + +    +   V ++ V+   A +D    P+   
Sbjct: 61  WAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPDKYK 120

Query: 131 CQ-------AFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--VGY 179
            +          V+  K DS+   ++ ASI+AKVTRDR ++    +      + +   GY
Sbjct: 121 IKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALKEWLVEETGEDINRNFGSGY 180

Query: 180 P-TAKHQQVIKEK-----GPSCIHRLTFRP 203
           P   + +  + +      G   + R ++  
Sbjct: 181 PGDPETKAWLVQHKHSVFGFPSLVRFSWGT 210


>gi|37362282|gb|AAQ91269.1| ribonuclease H2, large subunit [Danio rerio]
 gi|220678488|emb|CAP09311.2| novel protein similar to ribonuclease H2, large subunit (RNASEH2A,
           zgc:56307) [Danio rerio]
          Length = 307

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 80/214 (37%), Gaps = 34/214 (15%)

Query: 28  GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI---TSSAI 80
           GIDE GRG + GP+V            +     + DSK ++  +RE L+ K+    S   
Sbjct: 32  GIDEAGRGPVLGPMVYGICFCPVSRKEDLKNLKVADSKTLTEAERENLFVKLDEAKSFVG 91

Query: 81  ISISSASHQYIDKHNIHKA--TLDAIYH-AVENL-------QVIPRSALIDGRSIPEDL- 129
            ++   S   I    + +A   L+A+ H A   L        V  +   +D     E   
Sbjct: 92  WALQILSPNMISTSMLQRAKYNLNALSHDAAIGLVQYALDSGVQLKEVFVDTVGPAEKYQ 151

Query: 130 --------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA--HKKYPDYGFDSHVGY 179
                     +     K DS+   ++AASI AKV RD  ++     +   D   D   GY
Sbjct: 152 DKLSQRFPGVEVTVRPKADSLFPIVSAASICAKVARDHAVKSWKFAEDLGDVDTDYGSGY 211

Query: 180 PT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207
           P   K +  + +      G     R ++   + L
Sbjct: 212 PNDPKTKSWLLKYLDPVFGYPQFVRFSWSTAQTL 245


>gi|28374439|gb|AAH46061.1| Ribonuclease H2, subunit A [Danio rerio]
          Length = 307

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 80/214 (37%), Gaps = 34/214 (15%)

Query: 28  GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI---TSSAI 80
           GIDE GRG + GP+V            +     + DSK ++  +RE L+ K+    S   
Sbjct: 32  GIDEAGRGPVLGPMVYGICFCPVSRKEDLKNLKVADSKTLTEAERENLFVKLDEAKSFVG 91

Query: 81  ISISSASHQYIDKHNIHKA--TLDAIYH-AVENL-------QVIPRSALIDGRSIPEDL- 129
            ++   S   I    + +A   L+A+ H A   L        V  +   +D     E   
Sbjct: 92  WALQILSPNMISTSMLQRAKYNLNALSHDAAIGLVQYALDSGVQLKEVFVDTVGPAEKYQ 151

Query: 130 --------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA--HKKYPDYGFDSHVGY 179
                     +     K DS+   ++AASI AKV RD  ++     +   D   D   GY
Sbjct: 152 DKLSQRFPGVEVTVRPKADSLFPIVSAASICAKVARDHAVKSWKFAEDLGDVDTDYGSGY 211

Query: 180 PT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207
           P   K +  + +      G     R ++   + L
Sbjct: 212 PNDPKTKSWLLKYLDPVFGYPQFVRFSWSTAQTL 245


>gi|48762662|ref|NP_956520.2| ribonuclease H2 subunit A [Danio rerio]
 gi|47938809|gb|AAH71375.1| Ribonuclease H2, subunit A [Danio rerio]
          Length = 307

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 80/214 (37%), Gaps = 34/214 (15%)

Query: 28  GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI---TSSAI 80
           GIDE GRG + GP+V            +     + DSK ++  +RE L+ K+    S   
Sbjct: 32  GIDEAGRGPVLGPMVYGICFCPVSRKEDLKNLKVADSKTLTEAERENLFVKLDEAKSFVG 91

Query: 81  ISISSASHQYIDKHNIHKA--TLDAIYH-AVENL-------QVIPRSALIDGRSIPEDL- 129
            ++   S   I    + +A   L+A+ H A   L        V  +   +D     E   
Sbjct: 92  WALQILSPNMISTSMLQRAKYNLNALSHDAAIGLVQYALDSGVQLKEVFVDTVGPAEKYQ 151

Query: 130 --------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA--HKKYPDYGFDSHVGY 179
                     +     K DS+   ++AASI AKV RD  ++     +   D   D   GY
Sbjct: 152 DKLSQRFPGVEVTVRPKADSLFPIVSAASICAKVARDHAVKSWKFAEDLGDVDTDYGSGY 211

Query: 180 PT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207
           P   K +  + +      G     R ++   + L
Sbjct: 212 PNDPKTKSWLLKYLDPVFGYPQFVRFSWSTAQTL 245


>gi|148665343|gb|EDK97759.1| phosphatidylinositol glycan anchor biosynthesis, class Z [Mus
           musculus]
          Length = 799

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 23/184 (12%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80
            V G+DE GR  + GP+V A          +     + DSK ++  +RE L+ K+     
Sbjct: 29  CVLGVDEAGRAPVLGPMVYAICYCPLSRLADPEALKVADSKTLTENERERLFTKMEEDGD 88

Query: 81  ---ISISSASHQYID-------KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
               S+   S   I        K+N++  + D     + N + IP S +           
Sbjct: 89  FVGWSLDVLSPNLISISMLGRVKYNLNSLSHDTAAELIWNARDIPGSIIT------ALSG 142

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHVGYPT-AKHQQV 187
            +     K DS+   ++AASI AKVTRD+ ++     +   D   D   GYP+  K +  
Sbjct: 143 IEVTVKAKADSLFPVVSAASIFAKVTRDKAVKNWQFVEILQDLDSDYGSGYPSDPKTKAW 202

Query: 188 IKEK 191
           ++  
Sbjct: 203 LRRH 206


>gi|322489445|emb|CBZ24703.1| putative ribonuclease HII [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 268

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 101/246 (41%), Gaps = 77/246 (31%)

Query: 37  LAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSA--------------- 79
           +AGPV VAA +   +  P  + + DSK++    R E  E + +                 
Sbjct: 1   MAGPVGVAATLYRISATPVRYAVVDSKQMKENARAETLEAMCAELSDSGVEGFMGTTARD 60

Query: 80  ---------------IISISSASHQYIDKHNIHKATLDAI----------YHAVENLQVI 114
                           ++ +      I++ NI  ATL+ +          Y+A+  L ++
Sbjct: 61  GACCLVRYQRRKPLQAVAAALVDVSVINERNILNATLEGMSAVCDAIVRSYNAMSGLSIL 120

Query: 115 P---RSALIDGRSIP-----------------------EDLPCQ--------AFAVIKGD 140
                + LIDG  +P                       + +  +           V+KGD
Sbjct: 121 TPLTCAILIDGNRVPWTFLSGEERQRVRVQAVRKVEARKRIGIEYPALDGFGCTTVVKGD 180

Query: 141 SISLSIAAASIIAKVTRDRL-MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           +  LSIAAASI+AKV RD   + + H+ +P YGFD H GY TA H+  +   GPS  HRL
Sbjct: 181 ATLLSIAAASIVAKVARDAYAVSVMHRAFPQYGFDHHKGYCTAAHKAELARWGPSPFHRL 240

Query: 200 TFRPLR 205
            + P++
Sbjct: 241 DYAPVK 246


>gi|302836379|ref|XP_002949750.1| hypothetical protein VOLCADRAFT_104408 [Volvox carteri f.
           nagariensis]
 gi|300265109|gb|EFJ49302.1| hypothetical protein VOLCADRAFT_104408 [Volvox carteri f.
           nagariensis]
          Length = 308

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/213 (24%), Positives = 88/213 (41%), Gaps = 32/213 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREELYEKITSSAIIS 82
            + G+DE GRG + GP+V A+     ++     G  DSK ++H+ RE+L+  I ++  + 
Sbjct: 34  CILGVDEAGRGPVLGPMVYASAFCPLSSDISGRGYADSKTLTHEAREKLFRAIDANTSVG 93

Query: 83  IS--SASHQYIDKHNI-----------HKATLDAIYHAVENLQVIPRSALIDGR------ 123
                 S Q+I  + +             AT   I  A+E+     +   +D        
Sbjct: 94  WVAHIMSAQHISHNMLGRDKVSLNSLAFDATCHVIRTALES-GASVKQVYVDTVGDADRH 152

Query: 124 --SIPEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
              +    P  +F V  K DS+   ++AASIIAKV RD+ +    +     G +   GYP
Sbjct: 153 SERLSRAFPGISFTVCPKADSLYPIVSAASIIAKVIRDKSLIDCRQALGLQG-EVGTGYP 211

Query: 181 TAKHQ-QVIKEK-----GPSCIHRLTFRPLRNL 207
                   +KE      G   + R ++     +
Sbjct: 212 GDATTVAWLKEHIHPVLGFPPLVRHSWETCARM 244


>gi|209877739|ref|XP_002140311.1| ribonuclease HI large subunit [Cryptosporidium muris RN66]
 gi|209555917|gb|EEA05962.1| ribonuclease HI large subunit, putative [Cryptosporidium muris
           RN66]
          Length = 286

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 89/221 (40%), Gaps = 42/221 (19%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKKREELYEKI---TS 77
            + GIDE GRG + GP+V A       N        I+DSKK++   RE++ + I    +
Sbjct: 20  VILGIDEAGRGPVLGPMVFACFYYPTENEKLLKLMNIDDSKKLTENSREKINKDIRNNKN 79

Query: 78  SAIISISSASHQYI-------DKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPE 127
                I     QY+        K+N+++ +  A  + ++++    V      ID    PE
Sbjct: 80  QFGWGIYILLPQYLSCQMLKKQKYNLNEISHTAAINLIKSVLQHGVNVTHIYIDTVGPPE 139

Query: 128 DLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIA-----HKKYPDYG- 172
               +   +          K DS+   ++ ASI+AKV RD  +        H +Y   G 
Sbjct: 140 SYKKKLKLLFPSINITVTPKADSLYPCVSGASILAKVERDHFLSNWWSFPGHDRYDHNGN 199

Query: 173 ----FDSHVGYP----TAKHQQVI--KEKGPSCIHRLTFRP 203
               ++   GYP    T +  + I  K  G   I R ++  
Sbjct: 200 NLSIYEQGSGYPGDPKTKQFLKQIFHKVFGFPNIVRFSWST 240


>gi|27382791|ref|NP_774320.1| ribonuclease HII [Bradyrhizobium japonicum USDA 110]
 gi|27355964|dbj|BAC52945.1| blr7680 [Bradyrhizobium japonicum USDA 110]
          Length = 111

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 1/108 (0%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71
              E  + E     VAG+DE G   LAGPV   A+IL P     GI+DSKK+    REEL
Sbjct: 2   LRFETSLWESGHAAVAGVDEAGMSPLAGPVSAGAVILKPGTRIVGIDDSKKLDAAAREEL 61

Query: 72  YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118
            ++I   A    ++    + ID  NI+ A + A+  AV  L++ PR  
Sbjct: 62  AKEIKEKAESWCVAFVEVEEIDAINIYWAGIQAMQRAVRGLRLPPRIV 109


>gi|325189407|emb|CCA23898.1| ribonuclease H2 subunit A putative [Albugo laibachii Nc14]
          Length = 303

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 88/222 (39%), Gaps = 42/222 (18%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSSAI 80
            + GIDE GRG + GP+V +A       +      G +DSK +S   R+ LY+ IT S  
Sbjct: 23  VIMGIDEAGRGPVLGPMVYSAAYWAIDSNEACEAMGFDDSKVLSAASRKSLYKTITESTE 82

Query: 81  IS-----ISSASHQYI------DKHNIHKATLDAIYHAVENLQ---VIPRSALID----- 121
           I        S S   I         N+++   DA    +E +Q   V  +   +D     
Sbjct: 83  IGSISWIARSVSACEISDKMQRKVRNLNEIARDATIQIIEIVQAKRVCLQCVYVDTIGDP 142

Query: 122 ---GRSIPEDLPCQAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKK-----YPDY 171
                 + +    +   V+  K D +   ++AASI+AKV RD ++     +      P  
Sbjct: 143 SWYQNFLTKHFREKITFVVRKKADQLFKIVSAASIVAKVIRDTILEEWKWETLTHTLP-- 200

Query: 172 GFDSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207
             +   GYP+    +  + +          I R ++  + NL
Sbjct: 201 -TEFGSGYPSDPSTKAWLLQYRDPIFAYPNIVRFSWSTIENL 241


>gi|313609088|gb|EFR84798.1| ribonuclease HII [Listeria monocytogenes FSL F2-208]
          Length = 142

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 1/82 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E  + ++    +AG+DEVGRG LAGPVV AA+IL  +    GINDSK++S  KR+ LY
Sbjct: 60  QYEKDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALY 119

Query: 73  EKITSSAI-ISISSASHQYIDK 93
           E I + AI + +    H  ID+
Sbjct: 120 ETIQTEAIAVGVGIIEHNVIDQ 141


>gi|148673841|gb|EDL05788.1| mCG129830, isoform CRA_a [Mus musculus]
          Length = 226

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 76/196 (38%), Gaps = 29/196 (14%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS--- 77
            V G+DE GRG + GP+V A          +     + DSK ++  +RE L+ K+     
Sbjct: 29  CVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGD 88

Query: 78  ---SA-------IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
               A       +IS S       + +++   T   +     +  V      +D   +PE
Sbjct: 89  FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPE 148

Query: 128 DL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSH 176
                        +     K DS+   ++AASI AKV RD+ ++     +   D   D  
Sbjct: 149 TYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYG 208

Query: 177 VGYPT-AKHQQVIKEK 191
            GYP   K +  +++ 
Sbjct: 209 SGYPNDPKTKAWLRKH 224


>gi|307188511|gb|EFN73248.1| Ribonuclease H2 subunit A [Camponotus floridanus]
          Length = 334

 Score =  115 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 81/214 (37%), Gaps = 35/214 (16%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI--- 80
           G+DE GRG + GP+V        +     +  G  DSK ++ KKR+E+++ I        
Sbjct: 65  GVDEAGRGPVLGPMVYGISYAPLSRKQLLVDLGCADSKSLTEKKRDEIFDDICKHKDSIG 124

Query: 81  ISISSASHQYIDKHN-----------IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            +I + S   I                  + +  I  A+E   V      +D    PE  
Sbjct: 125 WAIEAISPNVIANSMYRRTKVSLNEVSMVSAIKLIQGAIEA-GVNVAEIYVDTVGKPESY 183

Query: 130 PCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD-YGFDSHVGY 179
             +   V          K D+    ++AASI AKV+RD  +R    +  D  G +   GY
Sbjct: 184 QARLKGVFPGVKIVVAKKADATYPIVSAASICAKVSRDHALRAWRFREGDSIGTEYGSGY 243

Query: 180 PT-AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207
           PT    +  + E      G   + R ++     +
Sbjct: 244 PTDPVTKNWLSENVDAVFGFPQLVRFSWSTAEQI 277


>gi|159118024|ref|XP_001709231.1| Ribonuclease HI, large sub [Giardia lamblia ATCC 50803]
 gi|157437347|gb|EDO81557.1| Ribonuclease HI, large sub [Giardia lamblia ATCC 50803]
          Length = 243

 Score =  115 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 86/216 (39%), Gaps = 44/216 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELYEKITS-- 77
           + GIDE GRG + GP+V     +             G+ DSK +S   RE +Y ++    
Sbjct: 2   IVGIDEAGRGPVCGPLVYGIAWMPAEVYQTGILEKLGVTDSKALSANTREHIYNRLQDLP 61

Query: 78  -------SAIISISSASHQYI--DKHNIHKATLDAIYHAVENL--QVIPRSALID----- 121
                  +AI+S    S   +   K +++  + +A    +  L          ID     
Sbjct: 62  KEDFGCNTAIVSADQISRAMLAPHKTSLNLLSFEAARSLLYQLFISHEIEHVYIDLVGPE 121

Query: 122 ---GRSIPEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                 I E +P  A  +  K D+      AASI+AKV RDR ++      P +G     
Sbjct: 122 SQYAAYIRELMPSIALTICAKADAKYPITGAASIVAKVIRDRNIK------PQWG----S 171

Query: 178 GYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207
           GYP+  K ++ + +      G     R ++  ++ +
Sbjct: 172 GYPSDPKTKKYLDKTCHGIYGFPTHIRHSWETIKRI 207


>gi|253748461|gb|EET02569.1| Ribonuclease HI, large sub [Giardia intestinalis ATCC 50581]
          Length = 243

 Score =  115 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 89/216 (41%), Gaps = 44/216 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELYEKI---- 75
           + GIDE GRG + GP+V     +             G+NDSK +S   RE +YE++    
Sbjct: 2   IVGIDEAGRGPVCGPLVYGIAWMPAKVYQTGILEKLGVNDSKALSADTREYIYEQLHALP 61

Query: 76  -----TSSAIISISSASHQYI--DKHNIHKATLDAIYHAVENL--QVIPRSALIDGRS-- 124
                 ++A+IS    S   +   K +++  + +A    +  +          ID  S  
Sbjct: 62  KDDFGCNTAVISADQISRAMLAPRKTSLNLLSFEAARSLLYQVFTSYEIEHVYIDLVSPE 121

Query: 125 ------IPEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                 I E +P  A  +  K D       AASI+AKVTRDR ++        +G     
Sbjct: 122 SQYAAYIRELMPNLALTICAKADGKYPITGAASIVAKVTRDRHIKA------QWG----S 171

Query: 178 GYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207
           GYP+  K ++ + +      G     R ++  ++ +
Sbjct: 172 GYPSDPKTKEYLDKACHSIYGFPAHIRHSWETVKRI 207


>gi|15668305|ref|NP_247101.1| ribonuclease HII [Methanocaldococcus jannaschii DSM 2661]
 gi|2495822|sp|Q57599|RNH2_METJA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|1590900|gb|AAB98116.1| ribonuclease HII (rnhB) [Methanocaldococcus jannaschii DSM 2661]
          Length = 230

 Score =  115 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 85/222 (38%), Gaps = 42/222 (18%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA 79
             + GIDE GRG + GP+VV A  ++          G+ DSK+++  KR  L + + +  
Sbjct: 1   MIIIGIDEAGRGPVLGPMVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYLKKLLENLG 60

Query: 80  IISISSASHQYIDKHNIHKATLDAIYHA--------VENLQVIPRSA--LIDGRSIP--- 126
            +       + I++        D   +A        +E L +        ID  S     
Sbjct: 61  YVEKRILEAEEINQLMNSINLNDIEINAFSKVAKNLIEKLNIRDDEIEIYIDACSTNTKK 120

Query: 127 ---------------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171
                           +L  +  A  K D+    ++AASIIAK  RD ++    K Y D 
Sbjct: 121 FEDSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAKAERDEIIDYYKKIYGDI 180

Query: 172 GFDSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207
           G     GYP+  K  + +++          I R  ++  + +
Sbjct: 181 G----SGYPSDPKTIKFLEDYFKKHKKLPDIARTHWKTCKRI 218


>gi|169806222|ref|XP_001827856.1| ribonuclease HII [Enterocytozoon bieneusi H348]
 gi|161779304|gb|EDQ31327.1| ribonuclease HII [Enterocytozoon bieneusi H348]
          Length = 252

 Score =  115 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 94/230 (40%), Gaps = 36/230 (15%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELY 72
           L + ++E     + GIDE GRG + GP+V AA ++  N        DSK+++   R+  Y
Sbjct: 3   LFSNIKETTEEVIVGIDEAGRGPVIGPMVYAAYVMHTNERRIRQFIDSKQLTPNTRKNYY 62

Query: 73  EKITSSAIISISSA---SHQYIDKHNIHKATLDAIYHAVENLQVIP---RSALIDGRSIP 126
             + + A I I      ++      N+++   +A+   +  +       +   ID     
Sbjct: 63  ATMMNFAYIVIEPIYITTYMNNHIKNLNQIAEEAVVQLLNEINNKCKNVKMVYIDALGNV 122

Query: 127 EDLPCQAFAVI--------KGDSISLSIAAASIIAKVTRDR-LMRIAHKKYPDY------ 171
            +      A          K D+    ++AASI+AK+ RD       +  + +Y      
Sbjct: 123 SNYKKNLQAHFKFNFTIEAKADATYEVVSAASIVAKINRDAFFSSKTNNIHENYYTKLGY 182

Query: 172 -------GFDS-HVGYPTAKH-QQVIKEK-----GPSCIHRLTFRPLRNL 207
                   F+    GYP+  H QQ +K+      G + I R ++  +++L
Sbjct: 183 EELTSIKDFNHCGSGYPSDPHTQQWLKDNFHPISGFNSIVRHSWSTIQSL 232


>gi|157866086|ref|XP_001681749.1| ribonuclease hii [Leishmania major strain Friedlin]
 gi|68125048|emb|CAJ02388.1| putative ribonuclease HII [Leishmania major strain Friedlin]
          Length = 268

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 96/246 (39%), Gaps = 77/246 (31%)

Query: 37  LAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSA--------------- 79
           +AGPV VAA +   +  P  + + DSKK+    R E  E + +                 
Sbjct: 1   MAGPVGVAATLYRISATPVRYAVMDSKKMKESDRAETLEAMCAELSDAGVEGFVGTTVRD 60

Query: 80  ---------------IISISSASHQYIDKHNIHKATLDAI----------YHAVENLQ-- 112
                           ++ +      I++ NI  ATL+ +          Y+AV  L   
Sbjct: 61  GACCLVRYQRRKPLQAVAAALVDVSVINERNILNATLEGMSAVCEAVVRSYNAVSGLGTL 120

Query: 113 -VIPRSALIDGRSIPEDL-------------------------------PCQAFAVIKGD 140
             +  + LIDG  +P                                        V+KGD
Sbjct: 121 TPLTCAILIDGNRVPWTFLSGEERQRVCVQAVRKVEARKRIGVEYPALDGFSCTTVVKGD 180

Query: 141 SISLSIAAASIIAKVTRDRL-MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           +  LSIAAASI+AKV RD   + + H  +P YGFD H GY TA H+  +   GPS  HRL
Sbjct: 181 ATLLSIAAASIVAKVARDAYAVSVMHPAFPQYGFDHHKGYCTAAHKAELARWGPSRFHRL 240

Query: 200 TFRPLR 205
            + P++
Sbjct: 241 DYAPVK 246


>gi|242094016|ref|XP_002437498.1| hypothetical protein SORBIDRAFT_10g028180 [Sorghum bicolor]
 gi|241915721|gb|EER88865.1| hypothetical protein SORBIDRAFT_10g028180 [Sorghum bicolor]
          Length = 297

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 86/221 (38%), Gaps = 39/221 (17%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK 74
                  + GIDE GRG + GP+V   +    +           DSK +  ++REEL+E 
Sbjct: 8   WATKEPCLMGIDEAGRGPVLGPMVYGCMYCARSYNNTLATLKFADSKTLKEEQREELFES 67

Query: 75  ITSSAIISIS---------SASHQYIDKHNIHKATLD---AIYHAVENLQVIPRSALIDG 122
           +  ++ I            SA      K N+++ + +    +   + ++ V+     ID 
Sbjct: 68  LKVNSSIGWEVDVICPKDLSAKMLRKSKVNLNEISHNSAMGLVRKLLDMGVLLAEVYIDT 127

Query: 123 RSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIA--HKKYPDY 171
              PE    +              K DS+   ++ ASI+AKVTRDR +R     +   + 
Sbjct: 128 VGDPEKYRIKLTEKFPGIKFVVAKKADSLYPVVSGASIVAKVTRDRALRNWVFDETALNM 187

Query: 172 GFDSHVGYP----TAKHQQVIKEK-----GPSCIHRLTFRP 203
              +  GYP    T    Q +++      G   + R ++  
Sbjct: 188 HMKTGSGYPGDTDTK---QWLQDHKHPVFGFPTLVRFSWGT 225


>gi|194766523|ref|XP_001965374.1| GF24795 [Drosophila ananassae]
 gi|190617984|gb|EDV33508.1| GF24795 [Drosophila ananassae]
          Length = 347

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 83/222 (37%), Gaps = 49/222 (22%)

Query: 28  GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI--- 80
           G+DE GRG + GP+V                 G  DSK+++ +KR+ ++  I +      
Sbjct: 74  GVDEAGRGPVLGPMVYGIAYCPLESKKALEDLGCADSKQLTEEKRDIIFNDINTKDYATS 133

Query: 81  ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126
               ++   S   I    +   K +L+          I  A++   V      +D    P
Sbjct: 134 CIGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNISEVYVDTVGPP 192

Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173
           E    +              K DS    ++AASI AKVTRD  +++ +  +P+ G     
Sbjct: 193 EKYQEKLLKRFPTFKITVAKKADSTYPIVSAASICAKVTRDHALKVWN--FPE-GLVIKD 249

Query: 174 -DSHVGYP----TA----KHQQVIKEKGPSCIHRLTFRPLRN 206
                GYP    T     +H  V+   G   + R ++    N
Sbjct: 250 NAFGSGYPGDPVTKRFLAEHIDVV--FGFPRLVRFSWSTAEN 289


>gi|297703733|ref|XP_002828781.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease H2 subunit A-like
           [Pongo abelii]
          Length = 313

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 82/230 (35%), Gaps = 55/230 (23%)

Query: 25  PVAGIDEVGRGALAGP-------------VVVAAIILD----PNNIPFGINDSKKISHKK 67
            V G+DE GRG L GP             +V A          +     + DSK +   +
Sbjct: 29  CVLGVDEAGRGPLIGPRLPENXHPSSPGPMVYAICYCPLSRLADLEALKVADSKTLLESE 88

Query: 68  REELYEKITSSAIISIS--SASHQYID-------KHNIHKATLD---AIYHAVENLQVIP 115
           RE L+ K+     +  +    S   I        K+N++  + D    +     +  V  
Sbjct: 89  RERLFAKMEDRDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNV 148

Query: 116 RSALIDGRSIPEDL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA-- 164
               +D   +PE             +     K D++   ++AASI AKV RD+ ++    
Sbjct: 149 TQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQF 208

Query: 165 -----HKKYPDYGFDSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203
                   Y DYG     GYP   K +  +KE      G     R ++R 
Sbjct: 209 VEKLQDSXYTDYG----SGYPQDPKTKAWLKEHVEPVFGFPQFVRFSWRT 254


>gi|156542709|ref|XP_001603515.1| PREDICTED: similar to ENSANGP00000022231 [Nasonia vitripennis]
          Length = 350

 Score =  114 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 86/213 (40%), Gaps = 34/213 (15%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI--- 80
           G+DE GRG + GP+V        +        G  DSK ++ +KR+ +++KI  +     
Sbjct: 82  GVDEAGRGPVLGPMVYGIAYAPLSQKKLLVDMGCADSKSLTEEKRDTIFDKICDNGDKMG 141

Query: 81  ISISSASHQYI-------DKHNIHKATLD----AIYHAVENLQVIPRSALIDGRSIPEDL 129
            ++ + S  YI        K ++++ +++     I  A+++  V      +D    PE  
Sbjct: 142 YAVDAISPNYIANCMYRRTKTSLNEVSMNSAISLIKQAIDS-GVFVAEIYVDTVGKPEKY 200

Query: 130 PCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
             +   +          K DS    ++AASI AKV+RD  +R    +  +   +   GYP
Sbjct: 201 QAKLEGIFPGIKIVVAKKADSTYPIVSAASICAKVSRDHALRAWQFRETENESEYGSGYP 260

Query: 181 T-AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207
                +  +        G   + R ++     +
Sbjct: 261 NDPVTKSWLSSNVDPIFGFPQLVRFSWSTAEKI 293


>gi|146080572|ref|XP_001464032.1| ribonuclease hii [Leishmania infantum JPCM5]
 gi|134068122|emb|CAM66407.1| putative ribonuclease HII [Leishmania infantum JPCM5]
 gi|322497431|emb|CBZ32505.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 268

 Score =  114 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 97/246 (39%), Gaps = 77/246 (31%)

Query: 37  LAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSA--------------- 79
           +AGPV VAA +   +  P  + + DSKK+    R E  E + +                 
Sbjct: 1   MAGPVGVAATLYRISATPVRYAVLDSKKMKEIDRAETLEAMCAELSDAGVEGFVGTTVRD 60

Query: 80  ---------------IISISSASHQYIDKHNIHKATLDAI----------YHAVENLQ-- 112
                           ++ +      I++ NI  ATL+ +          Y+AV  L   
Sbjct: 61  GTCCLVRYQRRKPLQAVAAALVDVSVINERNILNATLEGMSAVCDAVVRSYNAVSGLDTL 120

Query: 113 -VIPRSALIDGRSIPEDL-------------------------------PCQAFAVIKGD 140
             +  + LIDG  +P                                        V+KGD
Sbjct: 121 TPLTCAILIDGNRVPWTFLSGEERQRVCVQAVRKVEARKRIGVEYPALDGFGCTTVVKGD 180

Query: 141 SISLSIAAASIIAKVTRDRL-MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           +  LSIAAASI+AKV RD   + + H+ +P YGFD H GY TA H+  +   GPS  HRL
Sbjct: 181 ATLLSIAAASIVAKVARDAYAVSVMHRAFPQYGFDHHKGYCTAAHKAELARWGPSRFHRL 240

Query: 200 TFRPLR 205
            + P++
Sbjct: 241 DYAPVK 246


>gi|322799751|gb|EFZ20956.1| hypothetical protein SINV_11176 [Solenopsis invicta]
          Length = 353

 Score =  114 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 79/217 (36%), Gaps = 41/217 (18%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKI---TSSAI 80
           G+DE GRG + GP+V        +     +  G  DSK ++ KKR+E+++ I     +  
Sbjct: 84  GVDEAGRGPVLGPMVYGISYAPLSQKQLLVDLGCADSKSLTEKKRDEIFDDICERKENIG 143

Query: 81  ISISSASHQYIDKHN----------IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            +I + S   I              +   +   +        V      +D    PE   
Sbjct: 144 WAIEAISPNIISNSMYRRTKVSLNEVSMISATNLIQGAIEAGVNVAEIYVDTVGKPESYQ 203

Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP-----DYGFDSH 176
            +   V          K D+    ++AASI AKVTRD  +R    +        YG    
Sbjct: 204 ARLKGVFPGIKIVVAKKADATYPIVSAASICAKVTRDHAIRAWRFREGENIETQYG---- 259

Query: 177 VGYPT-AKHQQVI-----KEKGPSCIHRLTFRPLRNL 207
            GYPT    ++ +     +  G   + R ++     +
Sbjct: 260 SGYPTDPVTKKWLSTNVDRVFGFPQLVRFSWSTAEQI 296


>gi|332797850|ref|YP_004459350.1| ribonuclease HII [Acidianus hospitalis W1]
 gi|332695585|gb|AEE95052.1| ribonuclease HII [Acidianus hospitalis W1]
          Length = 192

 Score =  114 bits (286), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 24/188 (12%)

Query: 41  VVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHN 95
           +V+A +I+D          G+ DSK +S +KRE+L+E I+  A    ++ A    ID  N
Sbjct: 1   MVIAGVIIDEKIEGMLKEVGVKDSKILSREKREKLFEIISEFAEAYIVNKAYPNEIDSSN 60

Query: 96  IHKATLDAIYHAV-ENLQVIPRSALIDGRSIPE-------DLPCQAFAVIKGDSISLSIA 147
           +++ T   +   +  +L + P+   ID     +       +L  +   V   D   +  +
Sbjct: 61  LNELTYSKVIQIIYASLPLHPKIVTIDKVGNEDIVIMKIRELGLKDNVVFNADVKYIEAS 120

Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVI------KEKGPSCIHRLT 200
           AASIIAKVTRDR++    K Y D+G     GYP+  K ++ I       +  P  I R T
Sbjct: 121 AASIIAKVTRDRIIDSLKKIYGDFG----SGYPSDPKTRKWIIEIYEKDKNNPPPIIRRT 176

Query: 201 FRPLRNLS 208
           ++ L  ++
Sbjct: 177 WKTLLKIA 184


>gi|328783769|ref|XP_396289.3| PREDICTED: ribonuclease H2 subunit A-like isoform 1 [Apis
           mellifera]
          Length = 350

 Score =  114 bits (286), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 75/212 (35%), Gaps = 32/212 (15%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI--- 80
           GIDE GRG + GP+V        +     +  G  DSK ++ +KR+ +++KI        
Sbjct: 82  GIDEAGRGPVLGPMVYGISYAPLSEKQLLVDLGCADSKSLTEEKRDTIFDKICEQYKTIG 141

Query: 81  ISISSASHQYIDKHN----------IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
            ++   S   I              +   +   +   V           +D    PE   
Sbjct: 142 WAVDVISPNVISNSMYRRVKTSLNEVSMNSAIELAKLVIEAGARITEIYVDTIGKPEKYQ 201

Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
            +   +          K DS    ++AASI AKV+RD  +R           +   GYP 
Sbjct: 202 AKLEQIFPDIKITVAKKADSTYPIVSAASICAKVSRDHAIRAWQFLEGSITTEYGSGYPN 261

Query: 182 -AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207
             + ++ + E      G   I R ++     +
Sbjct: 262 DPETKKWLSENVDPVFGFPHIVRFSWSTAEKI 293


>gi|221057860|ref|XP_002261438.1| ribonuclease H1 large subunit [Plasmodium knowlesi strain H]
 gi|194247443|emb|CAQ40843.1| ribonuclease H1 large subunit, putative [Plasmodium knowlesi strain
           H]
          Length = 288

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 34/214 (15%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI--- 80
           GIDE GRG + GP+V A    +  +        I+DSKKIS   RE ++ K+ +S +   
Sbjct: 20  GIDEAGRGPVLGPMVYAGFYCNKEHEKLLKEMKIDDSKKISEADREMMFHKLNNSKLPFG 79

Query: 81  ISISSASHQYI-------DKHNIHKATLDAIYHAVENL---QVIPRSALIDGR---SIPE 127
             I     Q I        K+N+++ + D     + ++           +D     ++ E
Sbjct: 80  WRIHVLMPQDISAKMLKKQKYNLNEISHDTAISIINHVISRGCNLTEVFVDTVGKANVYE 139

Query: 128 DLPCQAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS--HVGY 179
           +   + F  I      K DS+   ++AASI AKVTRD L++    + P    D     GY
Sbjct: 140 EKLTKLFPHIKCTVREKADSLYPVVSAASICAKVTRDFLIKKWKYEEPLVNIDKGFGSGY 199

Query: 180 P-TAKHQQVIKE-----KGPSCIHRLTFRPLRNL 207
           P     +  +K       G   I R ++    N+
Sbjct: 200 PGDPITKNFLKNNFDSVFGFPSIVRFSWSTADNM 233


>gi|289582357|ref|YP_003480823.1| ribonuclease HII [Natrialba magadii ATCC 43099]
 gi|289531910|gb|ADD06261.1| ribonuclease HII [Natrialba magadii ATCC 43099]
          Length = 221

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 78/208 (37%), Gaps = 28/208 (13%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAIISISS 85
            G+DE G+G + G +  AA+ ++    +P GI DSK+++  +R+EL   +     I +  
Sbjct: 3   IGVDEAGKGPVLGSMFAAAVHVERETVLPDGIADSKRLTPARRDELAATLREDDRIGVGV 62

Query: 86  ASH--QYIDKHNIHKATLDAIYHAVENLQVIPRSAL------------IDGRSIPE---- 127
           A      ID       +L    HA     V   + L             D          
Sbjct: 63  AEITTAQIDDPETDMNSLSVRAHAEAIEAVAADTVLEAPITGLCDACDTDADRFARRVAD 122

Query: 128 --DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
              L C   A    D  S  + AASIIAKV RD  +      +PD G     GYP+  + 
Sbjct: 123 RCGLECTISAEHGADDDSPIVGAASIIAKVERDTHVESVSAAFPDCG-PVGSGYPSDPNT 181

Query: 186 QVIKE-----KGPSCI-HRLTFRPLRNL 207
           +   E      G      R ++    ++
Sbjct: 182 RAFLESYVDAHGELPACARESWSTCEDV 209


>gi|225464176|ref|XP_002269852.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
          Length = 278

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 77/198 (38%), Gaps = 28/198 (14%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIIS 82
            GIDE GRG + GP+V   +    +           DSK +  +KREEL+E + +   I 
Sbjct: 17  MGIDEAGRGPVLGPMVYGCLYCARSYHNTLSTLNFADSKTLKEEKREELFENLKADESIG 76

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR--------SIPEDLPCQAF 134
            +      ID   +    L      V N+ V+     +D           + E  P   F
Sbjct: 77  WA---VDVIDPWELSAKMLKK----VLNMGVLLTEVYVDTVGDAEKYRIKLSERFPAVKF 129

Query: 135 AVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--VGYP-TAKHQQVIKE 190
            V  K DS+   ++ ASI+AKVTRDR +R             +   GYP     +  ++ 
Sbjct: 130 VVAKKADSLYPVVSGASIVAKVTRDRALRDWVLVETAENMHRNFGSGYPGDPVTKSWLQH 189

Query: 191 K-----GPSCIHRLTFRP 203
                 G   + R ++  
Sbjct: 190 HKHSVFGFPTLVRFSWGT 207


>gi|326431468|gb|EGD77038.1| ribonuclease [Salpingoeca sp. ATCC 50818]
          Length = 421

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 83/224 (37%), Gaps = 47/224 (20%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80
            + G+DE GRG + GP+V                 G  DSK +  ++RE L+ ++ S ++
Sbjct: 126 CILGVDEAGRGPVCGPMVYGVAFAPKPMEKTLKNMGFTDSKVVKEEERERLFTEMKSGSL 185

Query: 81  ---------------ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
                          IS    + Q    + +   T   +     +  V   +  +D    
Sbjct: 186 HGKMGWKVHSLSPNTISTGMLARQKYSLNELSHDTCIGLIRRCLDQGVNLEAVYVDTVGP 245

Query: 126 PEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP------- 169
                 +   +          K DS  + ++AASI AKV RD ++     ++P       
Sbjct: 246 DTVYQAKLQGIFPQLKITVSKKADSKYVIVSAASICAKVVRDHVLS--AWRHPERIGANT 303

Query: 170 DYGFDSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207
           +YG     GYP+  K +  ++       G   + R +++  + L
Sbjct: 304 EYG----CGYPSDPKTKAWLRANIDKVFGFPSVVRFSWQTAQTL 343


>gi|115484243|ref|NP_001065783.1| Os11g0153900 [Oryza sativa Japonica Group]
 gi|62701661|gb|AAX92734.1| ribonuclease HII, putative [Oryza sativa Japonica Group]
 gi|77548724|gb|ABA91521.1| ribonuclease HI large subunit, putative, expressed [Oryza sativa
           Japonica Group]
 gi|113644487|dbj|BAF27628.1| Os11g0153900 [Oryza sativa Japonica Group]
 gi|125576251|gb|EAZ17473.1| hypothetical protein OsJ_33004 [Oryza sativa Japonica Group]
          Length = 298

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 90/219 (41%), Gaps = 35/219 (15%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK 74
                  + GIDE GRG + GP+V   +    +           DSK +  ++REEL+E 
Sbjct: 9   WATKEPCLMGIDEAGRGPVLGPMVYGCMYCARSYQDTLATLKFADSKTLKEEQREELFES 68

Query: 75  ITSSAIISIS---------SASHQYIDKHNIHKATLD----AIYHAVENLQVIPRSALID 121
           +  ++ I            SA      K N+++ + +     +  A++ + V+     ID
Sbjct: 69  LKDNSSIGWEVDVICPKELSAKMLKRSKVNLNEISHNSAMGLVKRALD-MGVLLAEVYID 127

Query: 122 GR--------SIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIA--HKKYPD 170
                      + E  P   F V  K DS+   ++ ASI++KVTRDR +R     +   +
Sbjct: 128 TVGDAEKYRIKLTEKFPGIKFVVAKKADSLFPVVSGASIVSKVTRDRALRNWVFDETAQN 187

Query: 171 YGFDSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRP 203
              ++  GYP     +Q +++      G   + R ++  
Sbjct: 188 MHMNTGSGYPGDPSTKQWLEDHKHPIFGFPSLVRFSWGT 226


>gi|125533439|gb|EAY79987.1| hypothetical protein OsI_35154 [Oryza sativa Indica Group]
          Length = 298

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 90/219 (41%), Gaps = 35/219 (15%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK 74
                  + GIDE GRG + GP+V   +    +           DSK +  ++REEL+E 
Sbjct: 9   WATKEPCLMGIDEAGRGPVLGPMVYGCMYCARSYQDTLATLKFADSKTLKEEQREELFES 68

Query: 75  ITSSAIISIS---------SASHQYIDKHNIHKATLD----AIYHAVENLQVIPRSALID 121
           +  ++ I            SA      K N+++ + +     +  A++ + V+     ID
Sbjct: 69  LKDNSSIGWEVDVICPKELSAKMLKRSKVNLNEISHNSAMGLVKRALD-MGVLLAEVYID 127

Query: 122 GR--------SIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIA--HKKYPD 170
                      + E  P   F V  K DS+   ++ ASI++KVTRDR +R     +   +
Sbjct: 128 TVGDAEKYRIKLTEKFPGIKFVVAKKADSLFPVVSGASIVSKVTRDRALRNWVFDETAQN 187

Query: 171 YGFDSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRP 203
              ++  GYP     +Q +++      G   + R ++  
Sbjct: 188 MHMNTGSGYPGDPSTKQWLEDHKHPIFGFPSLVRFSWGT 226


>gi|332030069|gb|EGI69894.1| Ribonuclease H2 subunit A [Acromyrmex echinatior]
          Length = 332

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 85/218 (38%), Gaps = 43/218 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI--- 80
           G+DE GRG + GP+V        +     +  G  DSK ++ KKR+E+++ I        
Sbjct: 65  GVDEAGRGPVLGPMVYGISYAPLSQNQLLVDLGCADSKSLTEKKRDEIFDDICKHKDSIG 124

Query: 81  ISISSASHQYI-------DKHNIHKATL----DAIYHAVENLQVIPRSALIDGRSIPEDL 129
            +I   S   I        K ++++ ++    + I  A+E   V      +D    PE  
Sbjct: 125 WAIEVISPNVIANNMYRRTKISLNEISMISATNLIREAIEA-GVNVAEIYVDTVGKPESY 183

Query: 130 PCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIA-----HKKYPDYGFDS 175
             +  ++          K D+    ++AASI AKV+RD  +R            +YG   
Sbjct: 184 QTRLKSIFPSIKIIVAKKADATYPIVSAASICAKVSRDHAIRAWRFREDDCIETEYG--- 240

Query: 176 HVGYPT-AKHQQVI-----KEKGPSCIHRLTFRPLRNL 207
             GYP     +  +     +  G   + R ++     +
Sbjct: 241 -SGYPNDPVTKNWLSMNVDQVFGFPQLVRFSWSTAEQI 277


>gi|300710295|ref|YP_003736109.1| ribonuclease HII [Halalkalicoccus jeotgali B3]
 gi|299123978|gb|ADJ14317.1| ribonuclease HII [Halalkalicoccus jeotgali B3]
          Length = 214

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/200 (26%), Positives = 87/200 (43%), Gaps = 30/200 (15%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKIT-SSAI-ISIS 84
           GIDE G+G + GP++ A + +   + +P GI+DSK+++  KR  L E +    AI I I+
Sbjct: 5   GIDEAGKGPVLGPMIAACVCVPDESVLPEGIDDSKRLTPAKRGRLSEALLGDEAIGIGIA 64

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQV-------IPRSALID--------GRSIPEDL 129
           + S   ID       +L    HA    +V       I  +  +D        G+ +PE +
Sbjct: 65  AVSPDRIDTPETDMNSLTVAAHAEAASEVVEPGMTGICDAGDVDAGRFVHRVGQRLPEGV 124

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVI 188
                     D     + AAS++AKV RDR +      Y + G     GYP+    ++ +
Sbjct: 125 SLSGE--HGADEHHAIVGAASVVAKVERDRRVAALEAAYGEVG----SGYPSDPTTREFL 178

Query: 189 KEK----GPSCI-HRLTFRP 203
            E     G      R +++ 
Sbjct: 179 AEYVAENGELPECARASWKT 198


>gi|66817316|ref|XP_642511.1| hypothetical protein DDB_G0277705 [Dictyostelium discoideum AX4]
 gi|60470610|gb|EAL68588.1| hypothetical protein DDB_G0277705 [Dictyostelium discoideum AX4]
          Length = 507

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 31/206 (15%)

Query: 4   NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GIND 59
           +++  +P    +  +          +DE G+GAL GP+ ++ ++LD  +  +    G+ D
Sbjct: 114 DNLMVQPKTSYKDKLEVFEEVLSISMDEAGKGALLGPLFISCVVLDDESEKYLKSMGVTD 173

Query: 60  SKKISHKKREELYEKITSSAIIS-ISSASHQYIDK----HNIHKATLDAIYHAV-ENLQV 113
           SKK+S K+RE LY+ I   A+       + + ID+    H +++   +  Y  + +++  
Sbjct: 174 SKKLSPKRREYLYDIIIEHALYYQTIILTSEKIDQRRELHTMNQIETNLFYQLIKDSINN 233

Query: 114 IP----RSALIDG-------------RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVT 156
           +P       +ID                 P  L  Q +   K D   +S+ AASIIAKV 
Sbjct: 234 LPKNQQCKIIIDSIEMNTQKYSQPFKMEFPPPL-YQIYCETKADHKFISVGAASIIAKVE 292

Query: 157 RDRLMRIAHKKYPDYGFDSHVGYPTA 182
           RDR M+               GYP+ 
Sbjct: 293 RDRWMKQLETNTSHI---IGSGYPSD 315


>gi|313609082|gb|EFR84793.1| ribonuclease HII [Listeria monocytogenes FSL F2-208]
          Length = 110

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/103 (43%), Positives = 64/103 (62%), Gaps = 2/103 (1%)

Query: 104 IYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163
           +  A++ LQ  P   LID    P        ++IKGD+ S+SIAAASIIAKVTRDRLM++
Sbjct: 1   MRAALDQLQPEPDFVLIDAM--PLKYTEAELSLIKGDTKSISIAAASIIAKVTRDRLMQM 58

Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
             + YP Y F +++GY T KH   +   G   IHR++F P+++
Sbjct: 59  YDETYPGYDFANNMGYGTKKHLHGLDTIGICPIHRISFAPVKD 101


>gi|312067297|ref|XP_003136676.1| ribonuclease HI large subunit [Loa loa]
 gi|307768160|gb|EFO27394.1| ribonuclease HI large subunit [Loa loa]
          Length = 303

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/224 (25%), Positives = 88/224 (39%), Gaps = 49/224 (21%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKIT-- 76
           M  V GIDE GRG + GP+V A  +   NN    +  G++DSK ++  KRE+++E++   
Sbjct: 28  MPCVVGIDEAGRGPVLGPMVYACAVTLVNNENILLEMGVDDSKVLTEAKREKIFERMEGD 87

Query: 77  --------SSAIISISSASHQY-------IDKHNIHKATLDAIYHAVENLQVIPRSALID 121
                   +   IS    S          ++K +   AT         N+ V+       
Sbjct: 88  NMSELFGYAHCSISAQMISAAMLGRTKCSLNKLSHDCATELLKLAIDNNINVVEVYVDTV 147

Query: 122 GRSIP------EDLP-CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP----- 169
           G   P      +  P  Q     K D+    ++AASI+AKV RDR +R     +P     
Sbjct: 148 GPKGPYQAMLHKKFPDMQIIVSEKADAKFPIVSAASIVAKVKRDRALRNW--TFPEGIIN 205

Query: 170 ----DYGFDSHVGYP----TA-KHQQVIKE-KGPSCIHRLTFRP 203
                YG     GYP    T       I    G   + R +++ 
Sbjct: 206 VPPNGYG----SGYPGDPNTKNFLLGAIDHVFGYPNLVRFSWKT 245


>gi|195470258|ref|XP_002087425.1| GE16128 [Drosophila yakuba]
 gi|194173526|gb|EDW87137.1| GE16128 [Drosophila yakuba]
          Length = 347

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 82/220 (37%), Gaps = 45/220 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI--- 80
           G+DE GRG + GP+V                 G  DSK+++ +KR+ ++  I +      
Sbjct: 74  GVDEAGRGPVLGPMVYGISYCPLESKKALEDLGCADSKQLTEEKRDIIFNDINTKDYATS 133

Query: 81  ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126
               ++   S   I    +   K +L+          I  A++   V      +D    P
Sbjct: 134 CIGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192

Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173
           E    +              K DS    ++AASI AKVTRD  +++   K+P+ G     
Sbjct: 193 EKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--KFPE-GLVIKD 249

Query: 174 -DSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRN 206
                GYP     ++ + E      G   + R ++    N
Sbjct: 250 NAFGSGYPGDPVTRRFLTEHIDLVFGFPRLVRFSWSTAEN 289


>gi|329571609|gb|EGG53290.1| putative ribonuclease HII [Enterococcus faecalis TX1467]
          Length = 137

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72
           + E    +K    +AGIDEVGRG LAGPVV AA+IL  +    G+NDSKK+S KKRE LY
Sbjct: 61  QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY 120

Query: 73  EKITSSAI-ISISSAS 87
            +I   A+ I +  A 
Sbjct: 121 NQIQEQAVAIGLGIAD 136


>gi|284164032|ref|YP_003402311.1| ribonuclease HII [Haloterrigena turkmenica DSM 5511]
 gi|284013687|gb|ADB59638.1| ribonuclease HII [Haloterrigena turkmenica DSM 5511]
          Length = 228

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 82/217 (37%), Gaps = 41/217 (18%)

Query: 28  GIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSA--IISIS 84
           G+DE G+G   G +  AA+   DP  +P GI DSK++S ++REEL   I       + ++
Sbjct: 4   GVDEAGKGPALGSMFAAAVHCEDPTALPDGIADSKRLSPERREELAAAIREDDGIRVGVA 63

Query: 85  SASHQYIDKHNIHKATLDAIYHA--------VENLQVIPRSALIDGRSIPED-------- 128
             +   ID       +L    HA         + L+  P + L D      +        
Sbjct: 64  EITPARIDDPETDMNSLAVAAHAEAIDGALEADALETAPITGLCDACDTDAERFARRVTD 123

Query: 129 ------------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
                       L     A    D  S  + AAS++AKV RD  +     +Y   G    
Sbjct: 124 ACTDLFADASSALEINIEARHGADDESPIVGAASVVAKVERDAHVAALADEYGPVG---- 179

Query: 177 VGYP----TAKHQQ-VIKEKG-PSCIHRLTFRPLRNL 207
            GYP    T +  +  + E G      R ++    ++
Sbjct: 180 SGYPNDPNTREFLESYVGEYGDLPPCARESWSTCEDV 216


>gi|289192478|ref|YP_003458419.1| ribonuclease HII [Methanocaldococcus sp. FS406-22]
 gi|288938928|gb|ADC69683.1| ribonuclease HII [Methanocaldococcus sp. FS406-22]
          Length = 230

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 88/222 (39%), Gaps = 42/222 (18%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSSA 79
             V GIDE GRG + GP+VV A  +    +      G+ DSK+++  KR  L + +    
Sbjct: 1   MIVIGIDEAGRGPVLGPMVVCAFAIEKDKEEELKKLGVRDSKELTKNKRAYLKKLLEDLG 60

Query: 80  IISISSASHQYIDKH----NIHKATLDAIYHAVENL-----------QVIPRSALIDGRS 124
            +       + I++     N+++  ++A     ENL           ++   +   + + 
Sbjct: 61  YVEKLILEAEKINQLMSTINLNEIEINAFSKVAENLIEKLGIKDEKIEIYLDACSTNAKK 120

Query: 125 IPED-------------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171
              D             L  +  A  K D+    ++AASIIAK  RD ++    K Y D 
Sbjct: 121 FENDFKEKLDNIIKERNLNVKIIAEHKADAKYSVVSAASIIAKAERDEIIDNYKKIYGDI 180

Query: 172 GFDSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207
           G     GYP+  K  + ++           I R  ++  + +
Sbjct: 181 G----SGYPSDPKTIKFLENYFKKHKKLPDIARTHWKTCKRI 218


>gi|134114978|ref|XP_773787.1| hypothetical protein CNBH2390 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256415|gb|EAL19140.1| hypothetical protein CNBH2390 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 326

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 88/247 (35%), Gaps = 61/247 (24%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYE--KI 75
               + GIDE GRG + GP+V AA     +  P     G +DSK +S + R+ L+E   +
Sbjct: 34  GEGWIMGIDEAGRGPVLGPMVYAAAYCPLSFKPILESIGFDDSKALSAETRQTLWESFDV 93

Query: 76  TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL---------------- 119
                 S S+ S Q I  + + K  ++    A +    + ++AL                
Sbjct: 94  HPPLCYSSSTLSPQDISSNMLRKVPINLNRQAEDATVGLIQAALNRGINVTEASFSCSLA 153

Query: 120 ------------IDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRD 158
                       +D          +  A+          K DS+   + AASI+AKVTRD
Sbjct: 154 ASCWLTICLKCYVDALGPAPQWQARLTAIFPTIKFTVCPKADSLFKIVGAASIVAKVTRD 213

Query: 159 RLMRIAHKKYPDYGFDSH------------VGYPTAKHQQVIKE------KGPSCIHRLT 200
           R +             +H             GYP+    Q   +       G   I R +
Sbjct: 214 RYVHGWVDPEDVIHSATHIKSQDEEEVIRGSGYPSDPKTQAYLKGSIDPVFGYKGIVRFS 273

Query: 201 FRPLRNL 207
           +  ++ L
Sbjct: 274 WATVKVL 280


>gi|225464178|ref|XP_002269817.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
 gi|296086584|emb|CBI32219.3| unnamed protein product [Vitis vinifera]
          Length = 297

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 84/210 (40%), Gaps = 33/210 (15%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIIS 82
            GIDE GRG + GP+V   +    +           DSK +  +KREEL+E + +   I 
Sbjct: 17  MGIDEAGRGPVLGPMVYGCLYCARSYHNTLSTLNFADSKTLKEEKREELFENLKADESIG 76

Query: 83  IS---------SASHQYIDKHNIHKATLDAIYHA---VENLQVIPRSALIDGR------- 123
            +         SA     +K N+++ + D+       V N+ V+     +D         
Sbjct: 77  WAVDVIDPWELSAKMLKKNKINLNEISHDSAIGLITRVLNMGVLLTEVYVDTVGDAEKYR 136

Query: 124 -SIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--VGY 179
             + E  P   F V  K DS+   ++ ASI+AKVTRDR +R             +   GY
Sbjct: 137 IKLSERFPAVKFVVAKKADSLYPVVSGASIVAKVTRDRALRDWVLVETAENMHRNFGSGY 196

Query: 180 P-TAKHQQVIKEK-----GPSCIHRLTFRP 203
           P     +  ++       G   + R ++  
Sbjct: 197 PGDPVTKSWLQHHKHSVFGFPTLVRFSWGT 226


>gi|312208153|pdb|3P56|A Chain A, The Structure Of The Human Rnase H2 Complex Defines Key
           Interaction Interfaces Relevant To Enzyme Function And
           Human Disease
 gi|312208156|pdb|3P56|D Chain D, The Structure Of The Human Rnase H2 Complex Defines Key
           Interaction Interfaces Relevant To Enzyme Function And
           Human Disease
          Length = 299

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 81/212 (38%), Gaps = 33/212 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80
            V G+ E GRG + GP+V A          +     + DSK +   +RE L+ K+  +  
Sbjct: 29  CVLGVAEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDF 88

Query: 81  ISIS--SASHQYID-------KHNIHKATLD---AIYHAVENLQVIPRSALIDGRSIPED 128
           +  +    S   I        K+N++  + D    +     +  V      +D   +PE 
Sbjct: 89  VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPET 148

Query: 129 L---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177
                       +     K  ++   ++AASI AKV RD+ ++     +K  D   D   
Sbjct: 149 YQARLQQSFPGIEVTVKAKAAALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGS 208

Query: 178 GYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203
           GYP   K +  +KE      G     R ++R 
Sbjct: 209 GYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRT 240


>gi|223967509|emb|CAR93485.1| CG13690-PA [Drosophila melanogaster]
          Length = 347

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 82/220 (37%), Gaps = 45/220 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSAI- 80
           G+DE GRG + GP+V                 G  DSK+++ +KR+ ++  I     A  
Sbjct: 74  GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEEKRDIIFNDINTKEYATS 133

Query: 81  ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126
               ++   S   I    +   K +L+          I  A++   V      +D    P
Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192

Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173
           E    +              K DS    ++AASI AKVTRD  +++    +P+ G     
Sbjct: 193 EKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKD 249

Query: 174 -DSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRN 206
            +   GYP     ++ + E      G   + R ++    N
Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289


>gi|71747330|ref|XP_822720.1| ribonuclease HII [Trypanosoma brucei TREU927]
 gi|70832388|gb|EAN77892.1| ribonuclease HII, putative [Trypanosoma brucei]
          Length = 477

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 9/105 (8%)

Query: 108 VENLQVIPRSALIDGRSIPEDL---------PCQAFAVIKGDSISLSIAAASIIAKVTRD 158
            +   V P   L+DG + P +                +I+GD  SL+IAAAS +AKV+RD
Sbjct: 355 FDAEPVQPPLVLVDGHTAPYETVSVFTDVQTGGCVQPIIEGDKRSLTIAAASCLAKVSRD 414

Query: 159 RLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +M      YP Y F  + GYP   H + +K+ G S IHR ++RP
Sbjct: 415 EIMDYLDPLYPKYHFAENKGYPVDHHMRAVKKHGLSSIHRRSYRP 459



 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 13/69 (18%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAII-------------LDPNNIPFGINDSKKISHKK 67
           K  +   G DE GRG LAGPVV AA+              L   +  F I DSK +S  +
Sbjct: 128 KETFLTIGCDEAGRGPLAGPVVGAAVCRIPRSSFNNDLKALYDADEEFQIFDSKSVSETQ 187

Query: 68  REELYEKIT 76
           R+ +Y  IT
Sbjct: 188 RKVVYNNIT 196


>gi|195147238|ref|XP_002014587.1| GL19264 [Drosophila persimilis]
 gi|194106540|gb|EDW28583.1| GL19264 [Drosophila persimilis]
          Length = 340

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 84/222 (37%), Gaps = 49/222 (22%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKI------TS 77
           G+DE GRG + GP+V         +    I  G  DSK+++ +KR+ ++ ++       S
Sbjct: 67  GVDEAGRGPVLGPMVYGISYCPLESKQALIDLGCADSKQLTEEKRDVIFNELNTLEYANS 126

Query: 78  SAIISISSASHQYIDKHNIHKA-----------TLDAIYHAVENLQVIPRSALIDGRSIP 126
               ++   S   I      +A            +  I  A++   V      +D    P
Sbjct: 127 CVGWAVEIISPNVISTSMYRRAKCSLNEVSMESAMGLIQQAIDA-GVNIAEVYVDTVGPP 185

Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173
           E    +              K DS    ++AASI AKVTRD  +++   ++P+ G     
Sbjct: 186 EKYQEKLLRRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--RFPE-GLVIKD 242

Query: 174 -DSHVGYP----TA----KHQQVIKEKGPSCIHRLTFRPLRN 206
                GYP    T     +H  ++   G   + R ++    N
Sbjct: 243 NAFGSGYPGDPVTKRFLTEHIDLV--FGFPRLVRFSWSTAEN 282


>gi|198473777|ref|XP_001356439.2| GA12461 [Drosophila pseudoobscura pseudoobscura]
 gi|198138103|gb|EAL33503.2| GA12461 [Drosophila pseudoobscura pseudoobscura]
          Length = 340

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 84/222 (37%), Gaps = 49/222 (22%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKI------TS 77
           G+DE GRG + GP+V         +    I  G  DSK+++ +KR+ ++ ++       S
Sbjct: 67  GVDEAGRGPVLGPMVYGISYCPLESKQALIDLGCADSKQLTEEKRDVIFNEMNTLEYANS 126

Query: 78  SAIISISSASHQYIDKHNIHKA-----------TLDAIYHAVENLQVIPRSALIDGRSIP 126
               ++   S   I      +A            +  I  A++   V      +D    P
Sbjct: 127 CVGWAVEIISPNVISTSMYRRAKCSLNEVSMESAMGLIQQAIDA-GVNIAEVYVDTVGPP 185

Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173
           E    +              K DS    ++AASI AKVTRD  +++   ++P+ G     
Sbjct: 186 EKYQEKLLRRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--RFPE-GLVIKD 242

Query: 174 -DSHVGYP----TA----KHQQVIKEKGPSCIHRLTFRPLRN 206
                GYP    T     +H  ++   G   + R ++    N
Sbjct: 243 NAFGSGYPGDPVTKRFLTEHIDLV--FGFPRLVRFSWSTAEN 282


>gi|116806104|emb|CAL26435.1| CG13690 [Drosophila simulans]
          Length = 347

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 45/220 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSAI- 80
           G+DE GRG + GP+V                 G  DSK+++  KR+ ++  I     A  
Sbjct: 74  GVDEAGRGPVLGPMVYGISYCPLESKKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133

Query: 81  ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126
               ++   S   I    +   K +L+          I  A++   V      +D    P
Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192

Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173
           E    +              K DS    ++AASI AKVTRD  +++    +P+ G     
Sbjct: 193 EKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKD 249

Query: 174 -DSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRN 206
            +   GYP     ++ + E      G   + R ++    N
Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289


>gi|328872786|gb|EGG21153.1| ribonuclease H2 subunit A [Dictyostelium fasciculatum]
          Length = 303

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 88/219 (40%), Gaps = 43/219 (19%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI 80
            + GIDE GRG + GP+V  A       I        NDSKK++ ++RE+L+ KI  S  
Sbjct: 43  YIMGIDEAGRGPVLGPLVYGACFAPLKEIETIKKMKFNDSKKLTEQQREQLFIKIIKSPD 102

Query: 81  ISISSAS----HQYIDKHN----------IHKATLDAIYHAVENLQVIPRSALIDGR--- 123
           + I   S     +Y+ +            I   +   +   V +     +   +D     
Sbjct: 103 V-IGFVSDINTPEYLSEKMCAKMPTSLDVISHGSAFKMIRTVLDRGYNVQELYLDTVGPA 161

Query: 124 -----SIPEDLPCQAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY----- 171
                 +    P     V+  K DSI   ++A SI+AKV RD L+  A+  +  Y     
Sbjct: 162 LKYQTKLQIAFPSIGKIVVSSKADSIYPIVSAGSIVAKVLRDVLI--ANTSFAAYQGVEI 219

Query: 172 GFDSHVGYPT-AKHQQVIKEK-----GPSC-IHRLTFRP 203
             D   GYP+    ++ ++E      G    I R +++ 
Sbjct: 220 SRDFGSGYPSDPSTKKWLREHRDNVFGYPDNIIRFSWKT 258


>gi|261332495|emb|CBH15490.1| ribonuclease HII, putative [Trypanosoma brucei gambiense DAL972]
          Length = 477

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 9/105 (8%)

Query: 108 VENLQVIPRSALIDGRSIPEDLPCQ---------AFAVIKGDSISLSIAAASIIAKVTRD 158
            +   V P   L+DG + P +                +I+GD  SL+IAAAS +AKV+RD
Sbjct: 355 FDAEPVQPPLVLVDGHTAPYETVAVFTDVQTGGCVQPIIEGDKRSLTIAAASCLAKVSRD 414

Query: 159 RLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
            +M      YP Y F  + GYP   H + +K+ G S IHR ++RP
Sbjct: 415 EIMDYLDPLYPKYHFAENKGYPVDHHMRAVKKHGLSSIHRRSYRP 459



 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 13/69 (18%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAII-------------LDPNNIPFGINDSKKISHKK 67
           K  +   G DE GRG LAGPVV AA+              L   +  F I DSK +S  +
Sbjct: 128 KETFLTIGCDEAGRGPLAGPVVGAAVCRIPRSSFNNDLKALYDADEEFQIFDSKSVSETQ 187

Query: 68  REELYEKIT 76
           R+ +Y  IT
Sbjct: 188 RKVVYNNIT 196


>gi|84999888|ref|XP_954665.1| ribonuclease h1 large subunit [Theileria annulata]
 gi|65305660|emb|CAI73985.1| ribonuclease h1 large subunit, putative [Theileria annulata]
          Length = 277

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 88/229 (38%), Gaps = 49/229 (21%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-------IPFGINDSKKISHKKREE-- 70
            K+ + + GIDE GRG + GP+V         +           ++DSKK+S   RE   
Sbjct: 19  SKSDYVILGIDEAGRGPVLGPMVYGGFFCTKGDNCNSILKNKIKVDDSKKLSESMRENKF 78

Query: 71  ------------LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118
                       + E IT    IS      +  + + I   T  +I   V +     +  
Sbjct: 79  YQLNDPDHPFGVVAEVITPQ-YISYKMLQREKYNLNEISHDTAISIIRHVLSHGYNLKEV 137

Query: 119 LIDGR--------SIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
            ID           + +  P   F+V  K DSI  +++AASI+AKV RD +++       
Sbjct: 138 YIDAVGTVNKYESKLSKMFPKIQFSVREKADSIYPTVSAASIVAKVIRDNIIKTWK---- 193

Query: 170 DYGFD---SHVGYP----TA----KHQQVIKEKGPSCIHRLTFRPLRNL 207
            + F+      GYP    T     K+   I   G   I R ++    NL
Sbjct: 194 -FDFEVENIGSGYPGDPYTKDFLTKNMDKI--FGFPDIVRFSWSTASNL 239


>gi|297527144|ref|YP_003669168.1| ribonuclease HII [Staphylothermus hellenicus DSM 12710]
 gi|297256060|gb|ADI32269.1| ribonuclease HII [Staphylothermus hellenicus DSM 12710]
          Length = 244

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 86/207 (41%), Gaps = 31/207 (14%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIIS 82
            G+DE GRG L G +V+A +I+  N I      G+ DSK+++   R  L +KI   A  +
Sbjct: 10  IGVDEAGRGPLIGDLVIAILIISRNKIEKLISIGVKDSKQLTRHTRLSLAKKILKLADSA 69

Query: 83  -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPC----- 131
            I   S + ID +NI++   + I  A++    +          ID     ++        
Sbjct: 70  LIIYISPEIIDSYNINRIIAEKIILALKLFSPVINHYRTASIYIDEIKGYKNYILANLSK 129

Query: 132 ------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA-KH 184
                 +       D     ++AASI+AK  RD+ +    K Y + G     GYP+    
Sbjct: 130 YINNIEEYVMEPNADQKYPVVSAASILAKTIRDKNIDFLKKIYGNLG----SGYPSDRVT 185

Query: 185 QQVIK-----EKGPSCIHRLTFRPLRN 206
              +      EK P  I R T+  LR 
Sbjct: 186 INWLIKTYNGEKEPPLIIRRTWSTLRK 212


>gi|300702211|ref|XP_002995135.1| hypothetical protein NCER_102091 [Nosema ceranae BRL01]
 gi|239603960|gb|EEQ81464.1| hypothetical protein NCER_102091 [Nosema ceranae BRL01]
          Length = 235

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 91/214 (42%), Gaps = 30/214 (14%)

Query: 16  AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75
           + +++ +   + G+DE GRG + G +V   ++ + +N+P  + DSK ++ K R +++  +
Sbjct: 9   SSLKKSDKRVIVGVDEAGRGPVIGYMVYCVMVFEVDNVPKNLKDSKMLTEKMRNDIFVTL 68

Query: 76  TSSAIISISSASHQYIDKHNIHKATLD------------AIYHAVENLQVIPRSALIDGR 123
                 + ++    YI    +    L+             + +A  N++ I   A+    
Sbjct: 69  KDY-NYAYTALHPSYITTKMLSNVNLNDISWNTVLNLLKLVCNAYTNIEGIFIDAIGTCD 127

Query: 124 SIPE----DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
            + E    ++  +     K DS    ++ ASI+AKVTRD L+         +      GY
Sbjct: 128 KLKEFLELNIKHKCTVESKADSKYPVVSGASIVAKVTRDDLLSK-------FNISFGSGY 180

Query: 180 PT-AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207
           P+    ++ + +      G     R T+   +N+
Sbjct: 181 PSDPVTKKWLTKEVNYIFGWGKSVRYTWNTAKNI 214


>gi|195350095|ref|XP_002041577.1| GM16670 [Drosophila sechellia]
 gi|194123350|gb|EDW45393.1| GM16670 [Drosophila sechellia]
          Length = 347

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 45/220 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKI--TSSAI- 80
           G+DE GRG + GP+V                 G  DSK+++  KR+ ++  I     A  
Sbjct: 74  GVDEAGRGPVLGPMVYGISYCPLERNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133

Query: 81  ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126
               ++   S   I    +   K +L+          I  A++   V      +D    P
Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192

Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173
           E    +              K DS    ++AASI AKVTRD  +++    +P+ G     
Sbjct: 193 EKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKD 249

Query: 174 -DSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRN 206
            +   GYP     ++ + E      G   + R ++    N
Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289


>gi|145238902|ref|XP_001392098.1| ribonuclease H2 subunit A [Aspergillus niger CBS 513.88]
 gi|134076599|emb|CAK45152.1| unnamed protein product [Aspergillus niger]
          Length = 352

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 87/245 (35%), Gaps = 52/245 (21%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP------FGINDSKKISHKKR 68
           E        + + G+DE GRG + GP+V +A  L  +         +  NDSK ++   R
Sbjct: 57  EPTTNSSPNYLILGVDEAGRGPVLGPMVYSAFYLPQDLHHTLLTRDYSFNDSKALTPGVR 116

Query: 69  EELYEKIT-------SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAV 108
             L + +         S   ++   S + I    +               AT++ I   +
Sbjct: 117 ANLMKLLCTPGNPLHESCGWAVKLLSARDISSGMMRPGTGAYNLNAQAMDATIELIRGII 176

Query: 109 ENLQVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDR 159
           E+  +  R   ID    P     +   +          K DS+   ++AAS+ AKVTRD 
Sbjct: 177 EDRNMDVREVYIDTIGNPATYQQKLEKIFPSLRITVAKKADSLYPCVSAASVAAKVTRDV 236

Query: 160 LMRIAHK-KYPDYGFDS----------HVGYPTAKHQQVIKEKGPSCIH------RLTFR 202
            + + H+  Y D   +             GYP+        +K    I       R ++ 
Sbjct: 237 ALDLCHQAIYEDTHAEDSPRAVVPQSWGSGYPSDSKCANWLKKNMDPIFGWGNECRFSWG 296

Query: 203 PLRNL 207
             + L
Sbjct: 297 TAKEL 301


>gi|255640332|gb|ACU20454.1| unknown [Glycine max]
          Length = 219

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/201 (24%), Positives = 82/201 (40%), Gaps = 31/201 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI 80
            V GIDE GRG + GP+V   +    + +         DSK +  +KREEL+E +  +  
Sbjct: 14  CVMGIDEAGRGPVLGPMVYGCLYCSQSYLKTLSTLSFADSKTLKEEKREELFETLKLNDS 73

Query: 81  IS--ISSASHQYIDKHNI--HKATLDAIYHA--------VENLQVIPRSALIDG------ 122
           I   +     + +    +  +K  L+ I H+        V  + V+     ID       
Sbjct: 74  IGWDVDVIDPRELSAKMLKKNKINLNEISHSSAMGLIDRVLKMGVLLTEVYIDTVGDAGK 133

Query: 123 --RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRI--AHKKYPDYGFDSHV 177
               +    P   F V  K DS+   ++ ASI+AKVTRDR  R     +   +   +   
Sbjct: 134 YEMKLSNSFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRASREWVLDETAENMQRNFGS 193

Query: 178 GYP-TAKHQQVIKEKGPSCIH 197
           GYP   + +  +++      H
Sbjct: 194 GYPGDPQTKSWLEDH---KHH 211


>gi|194853461|ref|XP_001968168.1| GG24650 [Drosophila erecta]
 gi|190660035|gb|EDV57227.1| GG24650 [Drosophila erecta]
          Length = 347

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 84/222 (37%), Gaps = 49/222 (22%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI--- 80
           G+DE GRG + GP+V         +       G  DSK+++ +KR+ ++  I +      
Sbjct: 74  GVDEAGRGPVLGPMVYGISYCPLESKKPLEDLGCADSKQLTEEKRDIIFNDINTKDYATS 133

Query: 81  ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126
               ++   S   I    +   K +L+          I  A++   V      +D    P
Sbjct: 134 CIGWAVEIISPSTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192

Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173
           E    +              K DS    ++AASI AKVTRD  +++   K+P+ G     
Sbjct: 193 EKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--KFPE-GLVIKD 249

Query: 174 -DSHVGYP----TA----KHQQVIKEKGPSCIHRLTFRPLRN 206
                GYP    T     +H  ++   G   + R ++    N
Sbjct: 250 NAFGSGYPGDPVTKRFLAEHIDLV--FGFPRLVRFSWSTAEN 289


>gi|86171485|ref|XP_966221.1| ribonuclease HII, putative [Plasmodium falciparum 3D7]
 gi|46361187|emb|CAG25051.1| ribonuclease HII, putative [Plasmodium falciparum 3D7]
          Length = 288

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 89/221 (40%), Gaps = 35/221 (15%)

Query: 18  VREKNMWPV-AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELY 72
           + E     V  GIDE GRG + GP+V +    +  +        I+DSKKI+   RE+++
Sbjct: 9   LYEFGNEEVRLGIDEAGRGPVLGPMVYSGFYCNKEHEKLLKEMKIDDSKKITEADREKMF 68

Query: 73  EKITSSAI-------------ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
            K+ +S +             IS      Q  + + I   T  +I   V N         
Sbjct: 69  VKLNNSKLPFGWRVHILLPQDISAKMLKKQKYNLNEISHDTAISIIEHVINRGCNLTEVF 128

Query: 120 IDGR---SIPEDLPCQAFAVIK------GDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170
           +D     S+ E+   + F  IK       DS+   ++AASI AKVTRD L++    + P 
Sbjct: 129 VDTVGKASVYEEKLQKMFPHIKCTVKEKADSLYPVVSAASICAKVTRDFLLKKWKYEEPI 188

Query: 171 YGFD--SHVGYP-TAKHQQVIKE-----KGPSCIHRLTFRP 203
              D     GYP     +  +K       G   I R ++  
Sbjct: 189 INIDNGFGSGYPGDPVTKNFLKNNFDSVFGFPSIVRFSWST 229


>gi|195575541|ref|XP_002077636.1| GD22959 [Drosophila simulans]
 gi|194189645|gb|EDX03221.1| GD22959 [Drosophila simulans]
          Length = 347

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 45/220 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSAI- 80
           G+DE GRG + GP+V                 G  DSK+++  KR+ ++  I     A  
Sbjct: 74  GVDEAGRGPVLGPMVYGISYCPLESKKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133

Query: 81  ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126
               ++   S   I    +   K +L+          I  A++   V      +D    P
Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192

Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173
           E    +              K DS    ++AASI AKVTRD  +++    +P+ G     
Sbjct: 193 EKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKD 249

Query: 174 -DSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRN 206
            +   GYP     ++ + E      G   + R ++    N
Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289


>gi|116806086|emb|CAL26426.1| CG13690 [Drosophila melanogaster]
 gi|223967493|emb|CAR93477.1| CG13690-PA [Drosophila melanogaster]
 gi|223967499|emb|CAR93480.1| CG13690-PA [Drosophila melanogaster]
 gi|223967501|emb|CAR93481.1| CG13690-PA [Drosophila melanogaster]
          Length = 347

 Score =  111 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 45/220 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSAI- 80
           G+DE GRG + GP+V                 G  DSK+++  KR+ ++  I     A  
Sbjct: 74  GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133

Query: 81  ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126
               ++   S   I    +   K +L+          I  A++   V      +D    P
Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192

Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173
           E    +              K DS    ++AASI AKVTRD  +++    +P+ G     
Sbjct: 193 EKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKD 249

Query: 174 -DSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRN 206
            +   GYP     ++ + E      G   + R ++    N
Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289


>gi|195032708|ref|XP_001988545.1| GH10519 [Drosophila grimshawi]
 gi|193904545|gb|EDW03412.1| GH10519 [Drosophila grimshawi]
          Length = 334

 Score =  111 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 86/222 (38%), Gaps = 49/222 (22%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKI--TSSA-- 79
           G+DE GRG + GP+V         +    +  G  DSK+++ +KR+ ++  +     A  
Sbjct: 61  GVDEAGRGPVLGPMVYGISYCPLESKSVLVELGCADSKQLTEEKRDIIFNDLNTLEYANS 120

Query: 80  --IISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126
               ++   S   I    +   K +L+          I HA++   V      +D    P
Sbjct: 121 CIGWAVEIISPNVISSSMYRRTKCSLNEISMDSAMGLIQHAIDA-GVNIAEVYVDTVGPP 179

Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173
           E    +              K DS    ++AASI AKVTRD  +++   ++P+ G     
Sbjct: 180 EKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--QFPE-GLLIKD 236

Query: 174 -DSHVGYP----TA----KHQQVIKEKGPSCIHRLTFRPLRN 206
                GYP    T     +H  ++   G   + R ++    N
Sbjct: 237 NAFGSGYPGDPVTKRFLTEHIDLV--FGFPRLVRFSWSTAEN 276


>gi|116806098|emb|CAL26432.1| CG13690 [Drosophila melanogaster]
          Length = 347

 Score =  111 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 45/220 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSAI- 80
           G+DE GRG + GP+V                 G  DSK+++  KR+ ++  I     A  
Sbjct: 74  GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133

Query: 81  ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126
               ++   S   I    +   K +L+          I  A++   V      +D    P
Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192

Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173
           E    +              K DS    ++AASI AKVTRD  +++    +P+ G     
Sbjct: 193 EKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKD 249

Query: 174 -DSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRN 206
            +   GYP     ++ + E      G   + R ++    N
Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289


>gi|116806092|emb|CAL26429.1| CG13690 [Drosophila melanogaster]
 gi|116806094|emb|CAL26430.1| CG13690 [Drosophila melanogaster]
 gi|116806102|emb|CAL26434.1| CG13690 [Drosophila melanogaster]
          Length = 347

 Score =  111 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 45/220 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSAI- 80
           G+DE GRG + GP+V                 G  DSK+++  KR+ ++  I     A  
Sbjct: 74  GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133

Query: 81  ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126
               ++   S   I    +   K +L+          I  A++   V      +D    P
Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192

Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173
           E    +              K DS    ++AASI AKVTRD  +++    +P+ G     
Sbjct: 193 EKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKD 249

Query: 174 -DSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRN 206
            +   GYP     ++ + E      G   + R ++    N
Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289


>gi|116806082|emb|CAL26424.1| CG13690 [Drosophila melanogaster]
 gi|116806084|emb|CAL26425.1| CG13690 [Drosophila melanogaster]
 gi|116806090|emb|CAL26428.1| CG13690 [Drosophila melanogaster]
          Length = 347

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 45/220 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSAI- 80
           G+DE GRG + GP+V                 G  DSK+++  KR+ ++  I     A  
Sbjct: 74  GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133

Query: 81  ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126
               ++   S   I    +   K +L+          I  A++   V      +D    P
Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192

Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173
           E    +              K DS    ++AASI AKVTRD  +++    +P+ G     
Sbjct: 193 EKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKD 249

Query: 174 -DSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRN 206
            +   GYP     ++ + E      G   + R ++    N
Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289


>gi|116806080|emb|CAL26423.1| CG13690 [Drosophila melanogaster]
 gi|116806088|emb|CAL26427.1| CG13690 [Drosophila melanogaster]
 gi|116806100|emb|CAL26433.1| CG13690 [Drosophila melanogaster]
          Length = 347

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 45/220 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSAI- 80
           G+DE GRG + GP+V                 G  DSK+++  KR+ ++  I     A  
Sbjct: 74  GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133

Query: 81  ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126
               ++   S   I    +   K +L+          I  A++   V      +D    P
Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192

Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173
           E    +              K DS    ++AASI AKVTRD  +++    +P+ G     
Sbjct: 193 EKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKD 249

Query: 174 -DSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRN 206
            +   GYP     ++ + E      G   + R ++    N
Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289


>gi|24580635|ref|NP_608521.1| CG13690 [Drosophila melanogaster]
 gi|11387117|sp|Q9VPP5|RNH2A_DROME RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
           AltName: Full=Ribonuclease HI large subunit; Short=RNase
           HI large subunit; AltName: Full=Ribonuclease HI subunit
           A
 gi|7296208|gb|AAF51500.1| CG13690 [Drosophila melanogaster]
 gi|66772719|gb|AAY55671.1| IP10665p [Drosophila melanogaster]
 gi|220951678|gb|ACL88382.1| CG13690-PA [synthetic construct]
 gi|223967491|emb|CAR93476.1| CG13690-PA [Drosophila melanogaster]
 gi|223967495|emb|CAR93478.1| CG13690-PA [Drosophila melanogaster]
 gi|223967497|emb|CAR93479.1| CG13690-PA [Drosophila melanogaster]
 gi|223967507|emb|CAR93484.1| CG13690-PA [Drosophila melanogaster]
          Length = 347

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 45/220 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSAI- 80
           G+DE GRG + GP+V                 G  DSK+++  KR+ ++  I     A  
Sbjct: 74  GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133

Query: 81  ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126
               ++   S   I    +   K +L+          I  A++   V      +D    P
Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192

Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173
           E    +              K DS    ++AASI AKVTRD  +++    +P+ G     
Sbjct: 193 EKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKD 249

Query: 174 -DSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRN 206
            +   GYP     ++ + E      G   + R ++    N
Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289


>gi|116806096|emb|CAL26431.1| CG13690 [Drosophila melanogaster]
          Length = 347

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 45/220 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSAI- 80
           G+DE GRG + GP+V                 G  DSK+++  KR+ ++  I     A  
Sbjct: 74  GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133

Query: 81  ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126
               ++   S   I    +   K +L+          I  A++   V      +D    P
Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192

Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173
           E    +              K DS    ++AASI AKVTRD  +++    +P+ G     
Sbjct: 193 EKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKD 249

Query: 174 -DSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRN 206
            +   GYP     ++ + E      G   + R ++    N
Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289


>gi|158297564|ref|XP_317779.3| AGAP007741-PA [Anopheles gambiae str. PEST]
 gi|157015256|gb|EAA12465.3| AGAP007741-PA [Anopheles gambiae str. PEST]
          Length = 342

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 90/212 (42%), Gaps = 36/212 (16%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS----- 78
           G+DE GRG + GP+V        +        G  DSK+++ +KR+++++++        
Sbjct: 69  GVDEAGRGPVLGPMVYGIAFCPLSKKDILKQLGFADSKQLTEEKRDQIFDEMNRKDFAKT 128

Query: 79  AI-ISISSASHQYID-------KHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127
           A+  ++ + S   I        KH++++ ++D+    +    +  V      +D    PE
Sbjct: 129 ALGWAVEAISPNVISMCMLRRTKHSLNEVSMDSAIGLINSAIDAGVNIAEVYVDTVGPPE 188

Query: 128 DLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAH-KKYPDYG-FDSH 176
               +  A+          K DS    ++AASI AKVTRD  +++   ++ P+       
Sbjct: 189 KYQAKLKAIFPKFKITVAKKADSTYPIVSAASIAAKVTRDHALKVWKFRERPNEEVTSFG 248

Query: 177 VGYP----TAKHQQVIKE-KGPSCIHRLTFRP 203
            GYP    T K    I    G   + R ++  
Sbjct: 249 SGYPGDPTTKKFLGEIDLVFGFPRLVRFSWST 280


>gi|268612465|pdb|3KIO|A Chain A, Mouse Rnase H2 Complex
          Length = 301

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 78/213 (36%), Gaps = 34/213 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80
            V G+DE GRG + GP V A          +     + DSK ++  +RE L+ K      
Sbjct: 29  CVLGVDEAGRGPVLGPXVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKXEEDGD 88

Query: 81  ---ISISSASHQYID-------KHNIHKATLD---AIYHAVENLQVIPRSALIDGRSIPE 127
               ++   S   I        K+N++  + D    +     +  V      +D    PE
Sbjct: 89  FVGWALDVLSPNLISTSXLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGXPE 148

Query: 128 DL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSH 176
                        +     K DS+   ++AASI AKV RD+ ++     +   D   D  
Sbjct: 149 TYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYG 208

Query: 177 VGYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203
            GYP   K +  +++      G     R ++  
Sbjct: 209 SGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWST 241


>gi|223967505|emb|CAR93483.1| CG13690-PA [Drosophila melanogaster]
          Length = 347

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 45/220 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSAI- 80
           G+DE GRG + GP+V                 G  DSK+++  KR+ ++  I     A  
Sbjct: 74  GVDEAGRGPVLGPMVYGISYCPLESNKALEVLGCADSKQLTEGKRDIIFNDINTKEYATS 133

Query: 81  ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126
               ++   S   I    +   K +L+          I  A++   V      +D    P
Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192

Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173
           E    +              K DS    ++AASI AKVTRD  +++    +P+ G     
Sbjct: 193 EKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKD 249

Query: 174 -DSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRN 206
            +   GYP     ++ + E      G   + R ++    N
Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289


>gi|327281022|ref|XP_003225249.1| PREDICTED: ribonuclease H2 subunit A-like [Anolis carolinensis]
          Length = 300

 Score =  111 bits (278), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 36/211 (17%)

Query: 28  GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI---TSSAI 80
           GIDE GRG + GP+V            +     + DSK ++  +RE+L+EK+        
Sbjct: 32  GIDEAGRGPVLGPMVYGICYCPVARQGDLEAIKVADSKTLTEAQREQLFEKLDAAKDFVG 91

Query: 81  ISISSASHQYID-------KHNIHKATLD----AIYHAVENLQVIPRSALIDGRSIPEDL 129
            ++   S  +I        K+N++  + D     I HA+++  V      +D     E  
Sbjct: 92  WALHILSPNFISTSMQRRAKYNLNALSHDTAIGLIQHALDS-GVQVAEVFVDTVGPAEKY 150

Query: 130 ---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHVG 178
                      +     K DS+   ++AASI AKV RDR+++     +   +   D   G
Sbjct: 151 QEKLKQQFPGLEVTVKPKADSLFPVVSAASICAKVARDRVVKNWKFVEALENVDSDYGSG 210

Query: 179 YPT-AKHQQVIKE-----KGPSCIHRLTFRP 203
           YP   K ++ + +      G     R ++  
Sbjct: 211 YPNDPKTKEWLTQCLDPVFGFPQFVRFSWST 241


>gi|223967503|emb|CAR93482.1| CG13690-PA [Drosophila melanogaster]
          Length = 347

 Score =  111 bits (278), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 45/220 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSAI- 80
           G+DE GRG + GP+V                 G  DSK+++  KR+ ++  I     A  
Sbjct: 74  GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINAKEYATS 133

Query: 81  ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126
               ++   S   I    +   K +L+          I  A++   V      +D    P
Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192

Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173
           E    +              K DS    ++AASI AKVTRD  +++    +P+ G     
Sbjct: 193 EKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKD 249

Query: 174 -DSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRN 206
            +   GYP     ++ + E      G   + R ++    N
Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289


>gi|91091718|ref|XP_966789.1| PREDICTED: similar to ribonuclease hi large subunit [Tribolium
           castaneum]
 gi|270001067|gb|EEZ97514.1| hypothetical protein TcasGA2_TC011359 [Tribolium castaneum]
          Length = 306

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 87/224 (38%), Gaps = 49/224 (21%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVV--AAIILDPNNIP--FGINDSKKISHKKREELYEKIT 76
           K+   + GIDE GRG + GP+V   A   L+   +P   G  DSK ++ + R+ ++ KI 
Sbjct: 34  KDFPCILGIDEAGRGPVLGPMVYGTAFCPLNEATLPDSLGCADSKALNEESRDVIFSKIC 93

Query: 77  SSAI--ISISSASHQYIDKHNIH-----------KATLDAIYHAVENLQVIPRSALIDGR 123
           ++      +   +   I    +             A ++ I  A++   V      +D  
Sbjct: 94  ANRKMGWGVEVIAPNSICNSMLSRQKYSLNQVSMDAAINLIKMALKG-GVNLSHVYVDTV 152

Query: 124 SIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF- 173
             PE       ++          K DS    ++AASI AKVTRD  ++        +GF 
Sbjct: 153 GPPEKYQAYLKSLFPNVGVTVAKKADSTFPIVSAASICAKVTRDYALK-------GWGFG 205

Query: 174 --------DSHVGYP----TAKHQQVIKE--KGPSCIHRLTFRP 203
                   +   GYP    T K  Q  ++   G   + R ++  
Sbjct: 206 EGLQAGHEEFGSGYPGDPNTKKFLQNYRDPVFGYPHLVRFSWST 249


>gi|530464|emb|CAA83799.1| ribonuclease HII [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 114

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 40/114 (35%), Positives = 66/114 (57%), Gaps = 1/114 (0%)

Query: 39  GPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIH 97
           GP+VVA++IL P+     I DSKK++ K R+ L+++I ++ +   I   S + +D+ N  
Sbjct: 1   GPLVVASVILKPDYFNPLIKDSKKLNPKTRQVLFDEIINNCLDYQIMIISSKQVDELNPL 60

Query: 98  KATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASI 151
           +A+L      + NL++ P  ALIDG         +  ++IKGD  + SIA +SI
Sbjct: 61  QASLLGFKTTISNLKIXPDLALIDGNQNINLENIKTLSIIKGDDNNFSIACSSI 114


>gi|195456019|ref|XP_002074967.1| GK22869 [Drosophila willistoni]
 gi|194171052|gb|EDW85953.1| GK22869 [Drosophila willistoni]
          Length = 336

 Score =  110 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 85/220 (38%), Gaps = 45/220 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKI------TS 77
           G+DE GRG + GP+V         +    I  G  DSK+++ +KR+ ++ ++      T 
Sbjct: 63  GVDEAGRGPVLGPMVYGISYCPLESKQALIDLGCADSKQLTEEKRDIIFNELNTLDYATE 122

Query: 78  SAIISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126
               ++   S   I    +   K +L+          I  A++   V      +D    P
Sbjct: 123 CIGWAVEIISPNVISSSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVQIAEVYVDTVGPP 181

Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173
           E    +              K DS    ++AASI AKVTRD  +++   K+P+ G     
Sbjct: 182 EKYQEKLLRRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--KFPE-GLVIKD 238

Query: 174 -DSHVGYP----TAKHQ-QVIKE-KGPSCIHRLTFRPLRN 206
                GYP    T +   + I    G   + R ++    N
Sbjct: 239 NAFGSGYPGDPVTKRFLVENIDLVFGFPRLVRFSWSTAEN 278


>gi|126322781|ref|XP_001362490.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 304

 Score =  110 bits (277), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 78/210 (37%), Gaps = 34/210 (16%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKI---TSSAI 80
           GIDE GRG + GP+V        + +       + DSK +S  +RE L+ K+        
Sbjct: 32  GIDEAGRGPVLGPMVYGICFCPLSRLGDLEALKVADSKTLSEAERERLFGKLDQARDFVG 91

Query: 81  ISISSASHQYIDKHNIHKA----------TLDAIYHAVENLQVIPRSALIDGR------- 123
            ++   S   I      +A          T  A+     +  V      +D         
Sbjct: 92  WALDILSPNLISNSMQRRAKYNLNSLSHDTAMALVQLALDQGVKVTQVFVDTVGPADKYQ 151

Query: 124 -SIPEDLP-CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHVGY 179
             + E  P  +     K DS+   ++AASI AKV RD++++     +   D   D   GY
Sbjct: 152 QKLQERFPELEVTVRPKADSLFPVVSAASICAKVARDQVVKRWKFLEDLGDLKMDYGSGY 211

Query: 180 PT-AKHQQVIKE-----KGPSCIHRLTFRP 203
           P   K ++ + +      G     R ++  
Sbjct: 212 PNDPKTKEWLSQCLDPVFGFPQFVRFSWST 241


>gi|213029433|ref|ZP_03343880.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 92

 Score =  110 bits (277), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 53/82 (64%), Gaps = 1/82 (1%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83
            VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  LY++I   A+  S+
Sbjct: 11  LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLSLYDEIKEKALSWSL 70

Query: 84  SSASHQYIDKHNIHKATLDAIY 105
             A    ID+ NI  AT+ A+ 
Sbjct: 71  GRAEAHEIDELNILHATMLAMQ 92


>gi|281205710|gb|EFA79899.1| hypothetical protein PPL_06719 [Polysphondylium pallidum PN500]
          Length = 589

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 94/246 (38%), Gaps = 63/246 (25%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKIT 76
           KN     G+DE G+GA+ GP+V+AA+ LD          G+ DSKK+S ++REELY+ I 
Sbjct: 261 KNDMSYIGVDEAGKGAVLGPLVIAAVSLDSAAEQYLKAAGVKDSKKLSAQRREELYDIIK 320

Query: 77  SSAII-SISSASHQYIDKHNIHKAT--------LDAIYHAVENLQVIPRS---------- 117
             A+  +I     + ID     +          L+ I  ++ +L+  P+           
Sbjct: 321 ERALYTTIYILEARDIDIRRKTQTLNKIESDIFLELIQRSLNHLKSNPQEFIEEVEENNN 380

Query: 118 ALIDGRSIPED----------------------------LPCQAFAVI---KGDSISLSI 146
            ++ G     +                             P     VI   + DS  +S 
Sbjct: 381 IVVGGEQFNNNSNKPKKYKIQLDSLESNTGKFSLPFRDAFPAPEHTVICENQADSKYVST 440

Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK-HQQVIKEK-----GPSCIHRLT 200
            AASIIAKV RDR +    K           GYP+       I+             RL+
Sbjct: 441 GAASIIAKVERDRAIAALEKS---VNTPVGCGYPSDATTLTFIESYYQRNGNDHPDVRLS 497

Query: 201 FRPLRN 206
           ++ L N
Sbjct: 498 WKTLTN 503


>gi|256078514|ref|XP_002575540.1| ribonuclease hi large subunit [Schistosoma mansoni]
 gi|238660781|emb|CAZ31773.1| ribonuclease hi large subunit, putative [Schistosoma mansoni]
          Length = 290

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 35/194 (18%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII-- 81
           GIDE GRG + GP+V A  +   + +      G+ DSK ++  +RE+L +++ +      
Sbjct: 3   GIDEAGRGPVLGPMVYACALSPISQLNELETIGLADSKTLNENQREKLLKEMLNKCDWIS 62

Query: 82  -SISSASHQYIDKHNI--HKATLDAIYH--AVENLQVIPR------SALIDGRSIPEDLP 130
             +   S  YI +  +   K +L+ I H  A++ +Q +           +D     E   
Sbjct: 63  AVVHVISPVYITEKMLDKSKTSLNVISHDSAIQLIQSVLDSGVNLVEVYVDTVGKAEHYE 122

Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY----PDYGFDSHV 177
            +   +          K D     ++AASI AKVTRDR++++  K+     P+ G     
Sbjct: 123 TKLQNLFPQLKIRVESKADDTYPIVSAASIFAKVTRDRVLQMWPKEERGSVPE-GTGLGS 181

Query: 178 GYP----TAKHQQV 187
           GYP    T  + + 
Sbjct: 182 GYPGDPVTKSYLRA 195


>gi|291229986|ref|XP_002734939.1| PREDICTED: RNase H family member (rnh-2)-like [Saccoglossus
           kowalevskii]
          Length = 303

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 82/213 (38%), Gaps = 40/213 (18%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII-- 81
           GIDE GRG + GP+V        +        G  DSK +S ++REEL+ KI  +  +  
Sbjct: 34  GIDEAGRGPVLGPMVYGICYCPISKNEQLAEMGFADSKTLSEEQREELFTKIYEANQVLG 93

Query: 82  ------SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR------SALIDGRS----- 124
                 S +  S+    +      T+     A++ L++            +D        
Sbjct: 94  YKMEVLSPNIISNSMFRRTKCSLNTVSKDS-AIKLLRLTIEEGANIKEVYVDTVGDASKY 152

Query: 125 ---IPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG----FDSH 176
              + E  P     V  K D+    ++AASI AKV RDR ++    ++P++         
Sbjct: 153 QAYLKELFPDLEITVTPKADAKFPIVSAASICAKVCRDRAVKSW--QFPEFDEINETPYG 210

Query: 177 VGYP----TAKHQQVIKE--KGPSCIHRLTFRP 203
            GYP    T +    + E   G     R ++  
Sbjct: 211 SGYPNDPATKQWLSNVMEPVFGFPRFVRFSWST 243


>gi|290558916|gb|EFD92304.1| ribonuclease HII [Candidatus Parvarchaeum acidophilus ARMAN-5]
 gi|326422570|gb|EGD71965.1| Ribonuclease HII [Candidatus Parvarchaeum acidophilus
           ARMAN-5_'5-way FS']
          Length = 218

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 86/208 (41%), Gaps = 31/208 (14%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITSSAI-I 81
            GIDE GRG + GP+++A + ++ +        G+ DSK +S K+   L  +I  S    
Sbjct: 4   IGIDEAGRGPVIGPMIIAGVGINEDISNEFKSIGVKDSKLLSIKRIYLLEREIKKSTQNY 63

Query: 82  SISSASHQYIDKHNIHKATLDA---IYHAVENLQVIPRSALIDG-----RSIPEDLPCQA 133
                S + ID        L+       AV    +     +ID      + I E L    
Sbjct: 64  KTIKISSEEIDNRFEKGKNLNYLELDSMAVIANDLSGEKVIIDSPSSNTKKIKEYLQNLI 123

Query: 134 FAVIK-----GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----TAKH 184
              I       D   + ++AASI+AK  R+R +    K +   G+D   GYP    T + 
Sbjct: 124 KRKIIIAENYADRNHVEVSAASILAKSEREREVDKIKKIF---GYDFGSGYPSDPKTVEF 180

Query: 185 QQVIKEKG------PSCIHRLTFRPLRN 206
            ++IKE G         + R ++  L++
Sbjct: 181 LKIIKENGKIDESPYKELIRKSWSTLQS 208


>gi|256811096|ref|YP_003128465.1| ribonuclease HII [Methanocaldococcus fervens AG86]
 gi|256794296|gb|ACV24965.1| ribonuclease HII [Methanocaldococcus fervens AG86]
          Length = 230

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 37/199 (18%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKI----TS 77
           + GIDE GRG + GP+V+    +  +        G+ DSK+++  KR  L + +     S
Sbjct: 3   IIGIDEAGRGPVLGPMVICGYAIKKDKEEDLKKLGVKDSKELTKNKRAYLKKLLENFGCS 62

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYHAVENL------QVIPRSALIDGRSIP----- 126
             +I  +   +  +D  N+++  ++A     +NL      +       +D  S       
Sbjct: 63  EKLILEAEKINNLMDTINLNEIEINAFSEVAKNLIKKLNIKDEEVEIYLDACSTNTKKFE 122

Query: 127 -------------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173
                         +L  +  A  K DS    ++AASIIAK  RD ++    K Y D G 
Sbjct: 123 SDFKEKIRDVIEERNLKIKIIAEHKADSKYPVVSAASIIAKAERDEIIENYKKIYGDIG- 181

Query: 174 DSHVGYPTA-KHQQVIKEK 191
               GYP+  K  + +++ 
Sbjct: 182 ---SGYPSDSKTIKFLEDY 197


>gi|10835820|pdb|1EKE|A Chain A, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
           With Mes Ligand
 gi|10835821|pdb|1EKE|B Chain B, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
           With Mes Ligand
          Length = 230

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 88/221 (39%), Gaps = 42/221 (19%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI 80
            + GIDE GRG + GP VV A  ++          G+ DSK+++  KR  L + + +   
Sbjct: 2   IIIGIDEAGRGPVLGPXVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYLKKLLENLGY 61

Query: 81  ISISSASHQYIDKH----NIHKATLDAI----YHAVENLQVIPRSA--LIDGRSIP---- 126
           +       + I++     N++   ++A      + +E L +        ID  S      
Sbjct: 62  VEKRILEAEEINQLXNSINLNDIEINAFSKVAKNLIEKLNIRDDEIEIYIDACSTNTKKF 121

Query: 127 --------------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172
                          +L  +  A  K D+    ++AASIIAK  RD ++    K Y D G
Sbjct: 122 EDSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAKAERDEIIDYYKKIYGDIG 181

Query: 173 FDSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207
                GYP+  K  + +++          I R  ++  + +
Sbjct: 182 ----SGYPSDPKTIKFLEDYFKKHKKLPDIARTHWKTCKRI 218


>gi|195388322|ref|XP_002052829.1| GJ19740 [Drosophila virilis]
 gi|194149286|gb|EDW64984.1| GJ19740 [Drosophila virilis]
          Length = 339

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 83/220 (37%), Gaps = 45/220 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKI--TSSA-- 79
           G+DE GRG + GP+V              +  G  DSK+++ +KRE ++  +     A  
Sbjct: 66  GVDEAGRGPVLGPMVYGISYCPLERKSALVELGCADSKQLTEEKREIIFNDLNTLEYANS 125

Query: 80  --IISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126
               ++   S   I    +   K +L+          I  A++   V      +D    P
Sbjct: 126 CIGWAVEIISPNVISSSMYRRTKCSLNEVSMDSAMGLIQEAIDA-GVNIAEVYVDTVGPP 184

Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173
           E    +              K DS    ++AASI AKVTRD  +++   ++P+ G     
Sbjct: 185 EKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--QFPE-GLIIKD 241

Query: 174 -DSHVGYP-TAKHQQVIKE-----KGPSCIHRLTFRPLRN 206
                GYP     ++ + E      G   + R ++    N
Sbjct: 242 NAFGSGYPGDPVTKRFLTENIDLVFGFPRLVRFSWSTAEN 281


>gi|290991286|ref|XP_002678266.1| predicted protein [Naegleria gruberi]
 gi|284091878|gb|EFC45522.1| predicted protein [Naegleria gruberi]
          Length = 245

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 89/232 (38%), Gaps = 48/232 (20%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-------IPFGINDSKKISHKKREELY 72
           E     V GIDE GRG + GP+V A +               F +NDSKK++ K RE+++
Sbjct: 8   EDENAYVMGIDEAGRGPVLGPLVYACMFCKSKYNTDNFLKKTFHVNDSKKLTAKMREKIF 67

Query: 73  EKITSSAIISI---SSASHQYI-------DKHNIHKATLDAIYHAV----ENLQVIPRS- 117
           + +  ++ I            I        K+N++  + D   H +    E L    +  
Sbjct: 68  KTLKENSKIVHYITCIVQSDEISHKMLSRKKYNLNLISHDCAIHLIKTASETLSKKGKYL 127

Query: 118 --ALIDGRSIPEDLPCQ-------AFAVI---KGDSISLSIAAASIIAKVTRDRLMRIAH 165
               ID    P+    +         +++   K DS    +  ASI+AKV RD ++    
Sbjct: 128 KEVYIDTVGDPKKYQAKLQEKFPEIESIVVDKKADSKYPVVGGASIVAKVKRDEIVEEIQ 187

Query: 166 KKYPDYG-FDSHVGYPTAKHQ-----QVIKE-KGPSCIH---RLTFRPLRNL 207
                Y       GY + K+      + + +  G    H   R ++  ++ +
Sbjct: 188 SL--KYSKLKMGSGYTSDKYTKDFLNKALDKVFGY--HHTDVRFSWSTIKKI 235


>gi|262200028|ref|YP_003271237.1| ribonuclease HII/HIII [Haliangium ochraceum DSM 14365]
 gi|262083375|gb|ACY19344.1| ribonuclease HII/HIII [Haliangium ochraceum DSM 14365]
          Length = 246

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 22/196 (11%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKI-----SHKKREELYEKITSS 78
           GIDE GRG + GP+V+AA+ LD     +    G+ DSK       +   R EL  ++++ 
Sbjct: 19  GIDEAGRGPVLGPMVMAAVCLDSGGARWLTRTGVRDSKAFGASSKARSARAELAAEVSAR 78

Query: 79  AI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLPCQ-- 132
           A+   +       ID+               E L        + + DG+++   L  +  
Sbjct: 79  AVHAEVQVIDVAVIDRRVRRHELNLLEREIAEQLIARAPAVDAIIADGKNLFRPLSQRYP 138

Query: 133 -AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY-PDYGFDSHVGYPTAKHQQVIKE 190
              A   G++   S+AAASI+AK  RD L     ++Y P +G     GY     ++ ++ 
Sbjct: 139 HLEACDGGEARHASVAAASILAKHRRDELFACIAQRYQPLFGELRGGGYVNEATRRFLRA 198

Query: 191 K----G-PSCIHRLTF 201
                G      R ++
Sbjct: 199 HVERFGRLPPEARRSW 214


>gi|324509653|gb|ADY44053.1| Ribonuclease H2 subunit A [Ascaris suum]
          Length = 298

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 86/225 (38%), Gaps = 44/225 (19%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKI 75
                 V GIDE GRG + GP+V A  I   +        G++DSK ++ +KR +++E +
Sbjct: 24  ASGKPCVLGIDEAGRGPVLGPMVYACAISPLDAAEQLKELGVDDSKALTEEKRTQIFENM 83

Query: 76  ------TSSAIISISSASHQYIDKHNIHKA-----------TLDAIYHAVENLQVIPRSA 118
                 T     +    S + I    + +             ++ I  A+EN  +     
Sbjct: 84  NNEENTTKVVAYAYRVLSARLISAEMLRRCKYSLNELSHTSAINLIKFALEN-GINVTEI 142

Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIA----- 164
            +D          +  A           K DS+   + AASI AKVTRD ++R       
Sbjct: 143 YVDTVGPKSTYQAKLQAHFPNISITVTEKADSLFPVVGAASIAAKVTRDGVLRDWVFVEG 202

Query: 165 HKKYPDYGFDSHVGYP-TAKHQQVIKE-----KGPSCIHRLTFRP 203
               P+ G+    GYP     ++ +        G S + R +++ 
Sbjct: 203 DVTVPEGGY--GSGYPGDPNTRKFLVTSIDPVFGYSSLVRFSWKT 245


>gi|322511078|gb|ADX06391.1| putative ribonuclease HII [Organic Lake phycodnavirus 2]
          Length = 120

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 8/93 (8%)

Query: 118 ALIDGRSIPEDLP----CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD--- 170
             +DG                 ++KGDSI   I+AASI+AKV RD  +R   K+ P    
Sbjct: 23  IYVDGNHFKPCFYKDKWIPFECIVKGDSIHKCISAASILAKVERDEYIRTLCKEQPILNE 82

Query: 171 -YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
            YG  ++ GY T KH + IK+ G S  HR +F+
Sbjct: 83  RYGLLNNKGYGTKKHVEGIKQYGYSEYHRKSFK 115


>gi|68067767|ref|XP_675818.1| ribonuclease H1 large subunit [Plasmodium berghei strain ANKA]
 gi|56495218|emb|CAH97375.1| ribonuclease H1 large subunit, putative [Plasmodium berghei]
          Length = 288

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 84/221 (38%), Gaps = 35/221 (15%)

Query: 18  VREKNMWPV-AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELY 72
           + E     V  GIDE GRG + GP+V +       +        I+DSKKI+   RE+++
Sbjct: 9   LYEFGNEEVRLGIDEAGRGPVLGPMVYSGFYCKKEDEKLLKEMKIDDSKKITEHDREKMF 68

Query: 73  EKITSSAI-------------ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119
            K+ +S +             IS      Q  + + I   T  +I   V N         
Sbjct: 69  YKLNNSKLPFAWRVHILMPQDISAKMLKRQKYNLNEISHDTAISIIQHVLNRGCNLTEVF 128

Query: 120 IDGR--------SIPEDLP-CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170
           +D           + +  P  +     K DS+   ++AASI AKVTRD L++    +   
Sbjct: 129 VDTVGKASVYEEKLQKLFPNIKCVVKEKADSLYPVVSAASICAKVTRDFLIKKWKYEEHI 188

Query: 171 YGFDS--HVGYP-TAKHQQVIKE-----KGPSCIHRLTFRP 203
              D     GYP     +  +K       G   I R ++  
Sbjct: 189 INIDKGFGSGYPGDPVTKNFLKNNFDPIFGFPSIVRFSWST 229


>gi|321469942|gb|EFX80920.1| hypothetical protein DAPPUDRAFT_230884 [Daphnia pulex]
          Length = 307

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 84/220 (38%), Gaps = 40/220 (18%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELY---EKITSSAI 80
           GIDE GRG + GP+V        +        G  DSK ++ ++RE+L+   + +     
Sbjct: 34  GIDEAGRGPVLGPMVYGITYCPESRAEELKAIGCADSKTLTEEQREKLFGKLDSLQDFVG 93

Query: 81  ISISSASHQYID-------KHNIHKATLD---AIYHAVENLQVIPRSALIDGRSIPEDLP 130
            ++   S   I        KH++++ + D    +     +L+    S  +D    PE   
Sbjct: 94  WAVEVISPNSICNNMFKRLKHSLNEVSHDSAIGLIRKALSLEANITSVFVDTVGPPEKYQ 153

Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY--------GF 173
            +  A+          K DS+   ++AASI AKV RD+ +     K   +          
Sbjct: 154 AKLSALFPGIKITVSKKADSLFPVVSAASICAKVARDKALSTWKFKESPFISLKAESQEL 213

Query: 174 DSHVGYP----TAKHQ-QVIK-EKGPSCIHRLTFRPLRNL 207
               GYP    T K   Q I    G   + R ++     +
Sbjct: 214 KWGSGYPGDPTTKKFLAQNIDGVFGFPQLVRFSWSTSEQI 253


>gi|82706071|ref|XP_727229.1| ribonuclease HII [Plasmodium yoelii yoelii str. 17XNL]
 gi|23482972|gb|EAA18794.1| ribonuclease HII, putative [Plasmodium yoelii yoelii]
          Length = 307

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 35/221 (15%)

Query: 18  VREKNMWPV-AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELY 72
           + E     V  GIDE GRG + GP+V +       +        I+DSKKI+   RE+++
Sbjct: 9   LYEFGNEEVRLGIDEAGRGPVLGPMVYSGFYCKKEDEKLLKEMKIDDSKKITEHDREKMF 68

Query: 73  EKITSSAI---ISISSASHQYI-------DKHNIHKATLDA---IYHAVENLQVIPRSAL 119
            K+ +S +     +     Q I       +K+N+++ + D    I   V +         
Sbjct: 69  YKLNNSKLPFAWRVHILMPQDISAKMLKKEKYNLNEISHDTAISIIQHVLSRGCNLTEVF 128

Query: 120 IDGR--------SIPEDLP-CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170
           +D           + +  P  +     K DS+   ++AASI AKVTRD L++    +   
Sbjct: 129 VDTVGKASVYEEKLQKLFPNIKCVVKEKADSLYPVVSAASICAKVTRDFLIKKWKYEEQI 188

Query: 171 YGFDS--HVGYP-TAKHQQVIKE-----KGPSCIHRLTFRP 203
              D     GYP     +  +K       G   I R ++  
Sbjct: 189 INIDKGFGSGYPGDPVTKNFLKNNFDPIFGFPSIVRFSWST 229


>gi|242010277|ref|XP_002425895.1| ribonuclease hi large subunit, putative [Pediculus humanus
           corporis]
 gi|212509871|gb|EEB13157.1| ribonuclease hi large subunit, putative [Pediculus humanus
           corporis]
          Length = 271

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 97/238 (40%), Gaps = 47/238 (19%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFG 56
           +F ++IPE+   E            + G+DE GRG + GP+V +      N+       G
Sbjct: 33  LFNSNIPEKCFLEP----------CILGVDEAGRGPVLGPMVYSVFFCSINDADILKDIG 82

Query: 57  INDSKKISHKKREELYEKITSSAI---ISISSASHQYI-------DKHNIHKATLDAIYH 106
             DSK ++ KKRE++++ I  +      ++   S   I        K+++++   ++   
Sbjct: 83  CTDSKVLTEKKREDIFDLINQNNDKLGWAVDLLSPNLISNRMLQRKKYSLNEIAQNSTIK 142

Query: 107 AVENL---QVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAK 154
            +E+L    +  +   +D     +    +   +          K D +   + AASI AK
Sbjct: 143 LIESLLEKNITLKDIFVDTIGPADKYQEKLSKLFPNSKVTVKSKADLLYPVVGAASICAK 202

Query: 155 VTRDRLMRIAHKKYPD---YGFDSHVGYP-TAKHQQVIKE-----KGPSCIHRLTFRP 203
           V RD  ++    K+P+      +   GYP   K ++ + E      G   + R ++  
Sbjct: 203 VIRDTAVQQW--KFPEKITIDAEFGTGYPGDPKTKKFLLESKDSVFGFPNLVRFSWST 258


>gi|195118270|ref|XP_002003663.1| GI18036 [Drosophila mojavensis]
 gi|193914238|gb|EDW13105.1| GI18036 [Drosophila mojavensis]
          Length = 342

 Score =  108 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 85/220 (38%), Gaps = 45/220 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKI--TSSA-- 79
           G+DE GRG + GP+V        N+    +  G  DSK+++ +KR+ ++  +     A  
Sbjct: 69  GVDEAGRGPVLGPMVYGISYCPLNSKEALVELGCADSKQLTEEKRDIIFNDMNTLEYANS 128

Query: 80  --IISISSASHQYIDK--HNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126
               ++   S   I    +   K +L+          I  A++   V      +D    P
Sbjct: 129 CIGWAVEIISPNVISNSMYRRSKCSLNEVSMDSAMGLIQRAIDA-GVNIAEVYVDTVGPP 187

Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173
           E    +              K DS    ++AASI AKVTRD  +++   ++P+ G     
Sbjct: 188 EKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--QFPE-GLVIKD 244

Query: 174 -DSHVGYP-TAKHQQVIKE-----KGPSCIHRLTFRPLRN 206
                GYP     ++ + E      G   + R ++    N
Sbjct: 245 NAFGSGYPGDPVTKRFLTENIDLVFGFPRLVRFSWSTAEN 284


>gi|296241926|ref|YP_003649413.1| ribonuclease HII [Thermosphaera aggregans DSM 11486]
 gi|296094510|gb|ADG90461.1| ribonuclease HII [Thermosphaera aggregans DSM 11486]
          Length = 248

 Score =  108 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 89/213 (41%), Gaps = 38/213 (17%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-----NDSKKISHKKREELYEKITSSA 79
            + GIDE GRG L G +VVA ++++       +      DSK ++ + R E +  + +S+
Sbjct: 4   YLIGIDEAGRGPLVGDMVVAGVMVEEKVFEELLSRISIRDSKTMTPRGRFESFLALENSS 63

Query: 80  I-ISISSASHQYIDKHNIHKATLDAIYHAVE-------NLQVIPRSALIDGRSIPE---- 127
           I + +   S + ID+ N++  T  +I   ++       +         ID     +    
Sbjct: 64  ISVYLDYLSPKEIDRENLNMLTAGSIVRIIQFFNTLLSSYDERLVEVYIDEVKGVKKVVE 123

Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
                     C+     + DS    ++ ASIIAKV+RD  +      + D+G     GYP
Sbjct: 124 KECSKLFGKRCKLVFESQADSKYPIVSLASIIAKVSRDLSISSNTSVHGDFG----SGYP 179

Query: 181 TAKHQQVI--------KEKGPSCIHRLTFRPLR 205
           +   + V+         E  P  I R ++  L+
Sbjct: 180 SDP-RAVLWLERVYNSLEH-PPPIVRKSWSILK 210


>gi|254576869|ref|XP_002494421.1| ZYRO0A01100p [Zygosaccharomyces rouxii]
 gi|238937310|emb|CAR25488.1| ZYRO0A01100p [Zygosaccharomyces rouxii]
          Length = 309

 Score =  108 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 82/230 (35%), Gaps = 47/230 (20%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKREELYEKI-- 75
             + G+DE GRG + GP+V                  +G +DSKK+S  +R  L+ KI  
Sbjct: 41  QIILGVDEAGRGPVLGPMVYGISYCTKQFQDEILKPNYGFDDSKKLSDLERRRLFSKIYG 100

Query: 76  -------TSSAIISISSASHQYIDKHNIH---KATLDAIYHA----------VENLQVIP 115
                   ++   ++++ +   I    +     A  +    A          V    V  
Sbjct: 101 ENGEVAEIANVGYAVTAITPADISSGMLRYPANANYNLNEQAHDVTIALIEGVLQRGVKL 160

Query: 116 RSALIDGRSIP--------EDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHK 166
               +D    P        +  P   F V  K DS+   ++ ASI+AKVTRD L+    +
Sbjct: 161 HHVYVDTVGPPASYQKKLEQKFPHIKFTVAKKADSLYCVVSVASIVAKVTRDILLEQWAQ 220

Query: 167 KY--PDYGFDSHVGYPTAKHQQVIKEKGPSCI-----H--RLTFRPLRNL 207
           +   P+ G     GYP               +     H  R +++    L
Sbjct: 221 QVSPPEAG-PLGSGYPADAKTTAWLRNTMKPLMGWDPHLVRFSWQTSETL 269


>gi|157136849|ref|XP_001656938.1| ribonuclease hi large subunit [Aedes aegypti]
 gi|108880967|gb|EAT45192.1| ribonuclease hi large subunit [Aedes aegypti]
          Length = 335

 Score =  108 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 84/217 (38%), Gaps = 41/217 (18%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI--TSS 78
            V G+DE GRG + GP+V                 G  DSK+++ +KR+ +++++     
Sbjct: 60  CVLGVDEAGRGPVLGPMVYGIAFCPITKKEVLKKLGFADSKQLTEEKRDVIFDEMNQKDY 119

Query: 79  AIISISSA-----------SHQYIDKHNIHKATLD----AIYHAVENLQVIPRSALIDGR 123
           A+ SI  A           S     K ++++ ++D     I  A+E   V      +D  
Sbjct: 120 AVESIGWAVEVIAPNDICMSMLRRTKRSLNEVSMDSAIGLIRKAIEA-GVNIAEVYVDTV 178

Query: 124 SIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIA---HKKYPDY 171
             PE    +   +          K DS    ++AASI AKV+RD  +++        P  
Sbjct: 179 GPPEKYQAKLKQIFPKFKITVAKKADSTYPIVSAASICAKVSRDHALKVWSFREGLEPGI 238

Query: 172 GFDSHVGYP-TAKHQQVIKEK----GPSCIHRLTFRP 203
            F    GYP     +  +       G   + R ++  
Sbjct: 239 NF--GSGYPGDPVTKNFLGTYDLVFGFPRLVRFSWST 273


>gi|71415356|ref|XP_809747.1| ribonuclease HII [Trypanosoma cruzi strain CL Brener]
 gi|70874177|gb|EAN87896.1| ribonuclease HII, putative [Trypanosoma cruzi]
          Length = 479

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 112 QVIPRSALIDGRSIPEDL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162
            V P   L+DG + PE+                +I+GD  SL+IAAAS +AKV RD +M 
Sbjct: 359 PVQPPLILVDGHAAPEETISFFTEIQTGGCVQPIIEGDKRSLTIAAASCLAKVARDEIMN 418

Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
                YP Y F  + GYP   H + ++  G S IHR +++P
Sbjct: 419 YVSTLYPKYQFAENKGYPVEYHMRAVQRYGVSSIHRKSYKP 459



 Score = 61.2 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 22/91 (24%)

Query: 8   ERPHFELEAMVREKNM---------WPVAGIDEVGRGALAGPVVVAAII----------- 47
           ++    LEA +R+  +         +   G DE GRG LAGPVV AA+            
Sbjct: 106 QKERTRLEARMRKHGVVLRRSIKETYLTIGCDEAGRGPLAGPVVGAAVCRIPLSSFNNEL 165

Query: 48  --LDPNNIPFGINDSKKISHKKREELYEKIT 76
             +      F I DSK +S  +R  +++ IT
Sbjct: 166 CAVYDTREEFQIFDSKSLSEGQRNVVFQNIT 196


>gi|322828022|gb|EFZ31977.1| ribonuclease HII, putative [Trypanosoma cruzi]
          Length = 479

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 112 QVIPRSALIDGRSIPEDL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162
            V P   L+DG + PE+                +I+GD  SL+IAAAS +AKV RD +M 
Sbjct: 359 PVQPPLILVDGHAAPEETISFFTEIQTGGCVQPIIEGDKRSLTIAAASCLAKVARDEIMN 418

Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
                YP Y F  + GYP   H + ++  G S IHR +++P
Sbjct: 419 YVSTLYPKYQFAENKGYPVEYHMRAVQRYGVSSIHRKSYKP 459



 Score = 60.5 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 22/91 (24%)

Query: 8   ERPHFELEAMVREKNM---------WPVAGIDEVGRGALAGPVVVAAII----------- 47
           ++    LEA +R+  +         +   G DE GRG LAGPVV AA+            
Sbjct: 106 QKERTRLEARMRKHGVVLRRSIKETYLTIGCDEAGRGPLAGPVVGAAVCRIPLSSFNNEL 165

Query: 48  --LDPNNIPFGINDSKKISHKKREELYEKIT 76
             +   +  F I DSK +S  +R  +++ IT
Sbjct: 166 CAVYDASEEFQIFDSKSLSEGQRNVVFQNIT 196


>gi|71406256|ref|XP_805682.1| ribonuclease HII [Trypanosoma cruzi strain CL Brener]
 gi|70869181|gb|EAN83831.1| ribonuclease HII, putative [Trypanosoma cruzi]
          Length = 479

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 112 QVIPRSALIDGRSIPEDL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162
            V P   L+DG + PE+                +I+GD  SL+IAAAS +AKV RD +M 
Sbjct: 359 PVQPPLILVDGHAAPEETISFFTEIQTGGCVQPIIEGDKRSLTIAAASCLAKVARDEIMN 418

Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
                YP Y F  + GYP   H + ++  G S IHR +++P
Sbjct: 419 YVSTLYPKYQFAENKGYPVEYHMRAVQRYGVSSIHRKSYKP 459



 Score = 61.2 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 22/91 (24%)

Query: 8   ERPHFELEAMVREKNM---------WPVAGIDEVGRGALAGPVVVAAII----------- 47
           ++    LEA +R+  +         +   G DE GRG LAGPVV AA+            
Sbjct: 106 QKERTRLEARMRKHGVVLRRSIKETYLTIGCDEAGRGPLAGPVVGAAVCRIPLSSFNNEL 165

Query: 48  --LDPNNIPFGINDSKKISHKKREELYEKIT 76
             +      F I DSK +S  +R  +++ IT
Sbjct: 166 CAVYDAREEFQIFDSKSLSEGQRNVVFQNIT 196


>gi|213404976|ref|XP_002173260.1| ribonuclease H2 subunit A [Schizosaccharomyces japonicus yFS275]
 gi|212001307|gb|EEB06967.1| ribonuclease H2 subunit A [Schizosaccharomyces japonicus yFS275]
          Length = 321

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 83/219 (37%), Gaps = 38/219 (17%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS---A 79
            V G+DE GRG + GP+V A            +G  DSK+++ +KR +L + +      A
Sbjct: 60  FVLGVDEAGRGPVLGPMVYAVAFCPTELKLSEYGFADSKQLTAEKRTQLLQAVCDRNNPA 119

Query: 80  IISISSASH------------QYIDKHNIHKATLD---AIYHAVENLQVIPRSALIDGRS 124
             SI  A+             + +DK+N++    D   A+  +V           +D   
Sbjct: 120 STSIGWATTVMTARDISRGMLRRVDKYNLNAQAHDSTIALIQSVLKAGYNISEIYVDTVG 179

Query: 125 IP--------EDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
            P           P     V  K DS+   ++ ASI AKVTRD  +    +      +  
Sbjct: 180 PPAVYQAKLQNRFPQAKVTVTKKADSLFPIVSLASICAKVTRDAHLERTREALDIDNW-- 237

Query: 176 HVGYPTAKHQQVIKEKGPSCI-----H--RLTFRPLRNL 207
             GY +         K    +     H  R +++  +NL
Sbjct: 238 GCGYSSDSQTTAWLRKNVHPVFGWKGHVVRYSWQTAKNL 276


>gi|330831767|ref|XP_003291928.1| hypothetical protein DICPUDRAFT_11524 [Dictyostelium purpureum]
 gi|325077872|gb|EGC31557.1| hypothetical protein DICPUDRAFT_11524 [Dictyostelium purpureum]
          Length = 206

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 75/180 (41%), Gaps = 29/180 (16%)

Query: 29  IDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITSSAIIS-I 83
           IDE G+G+L GP+VV+ +++D          G+ DSK++S  KRE LY  I+  +I    
Sbjct: 5   IDEAGKGSLLGPLVVSCVVMDSKTEQLFKEQGVKDSKQLSPLKRESLYNLISEKSIYHQT 64

Query: 84  SSASHQYIDKHNIHKATLDAIYHAVENL---------QVIPRSALIDG---RSIPEDLP- 130
              S+  IDK        +   +    L         +  P   ++D     S    LP 
Sbjct: 65  IILSNHDIDKRRSLHTLNEIETNIFYQLIKDSILNLAKNQPVKVILDSIESNSEKYSLPF 124

Query: 131 --------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
                   C+     K D    S+ AASI+AKV RD+ ++    +          GYP+ 
Sbjct: 125 KSYFGSPTCEIICETKADIKYTSVGAASILAKVKRDQFIKSLEIELDQ---TIGSGYPSD 181


>gi|170049569|ref|XP_001857534.1| ribonuclease H2 subunit A [Culex quinquefasciatus]
 gi|167871354|gb|EDS34737.1| ribonuclease H2 subunit A [Culex quinquefasciatus]
          Length = 334

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 50/217 (23%), Positives = 87/217 (40%), Gaps = 41/217 (18%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI 80
            V G+DE GRG + GP+V        +        G  DSK+++ +KRE +++++     
Sbjct: 59  CVLGVDEAGRGPVLGPMVYGIAFSPIDKKDVLKKLGFADSKQLTEEKREHIFDEMNKQDF 118

Query: 81  ------ISISSASHQYI-------DKHNIHKATLD----AIYHAVENLQVIPRSALIDGR 123
                  ++   S   I        K ++++ ++D     I+ A+E   V      +D  
Sbjct: 119 ATESIGWAVEVISPNDISMSMLRRSKRSLNEVSMDSAIGLIHKAIEA-GVNIAEVYVDTV 177

Query: 124 SIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY---PDY 171
             PE    +   +          K DS  L ++AASI AKV+RD  +++   +    P+ 
Sbjct: 178 GPPEKYQAKLKLIFPNFKITVAKKADSTYLIVSAASICAKVSRDHALKVWKFREGTDPEV 237

Query: 172 GFDSHVGYP----TAKHQQVIKE-KGPSCIHRLTFRP 203
            F    GYP    T K         G   + R ++  
Sbjct: 238 KF--GSGYPGDPVTKKFLGDFDRVFGFPRLVRFSWST 272


>gi|302348278|ref|YP_003815916.1| Ribonuclease HII [Acidilobus saccharovorans 345-15]
 gi|302328690|gb|ADL18885.1| Ribonuclease HII [Acidilobus saccharovorans 345-15]
          Length = 223

 Score =  107 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 27/206 (13%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS 78
           M  + G+DE GRG+L G +++A       N+      G+ DSK+++   RE LY  I   
Sbjct: 1   MSWIIGVDEAGRGSLVGELMLACFATKEENLGLLKDMGVRDSKQLTPHSRETLYRSIVRL 60

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSA---LIDGRSIPEDLPCQA 133
               +       ID+ N++     A    ++ L  ++ P       ID       LP + 
Sbjct: 61  GEFVVVPIPPAEIDRENVNVLEERAALKGLKVLLSRLRPELVKAIYIDKFGELRILPGEL 120

Query: 134 FAV---------IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
             +          K D+  + ++AASIIAKV RDR + +    Y   G     GYP+   
Sbjct: 121 KRLGFRGRLVVEPKADANYVVVSAASIIAKVIRDRRIEVLRSMYGVEG----SGYPSDPL 176

Query: 185 -----QQVIKEKGPSCIHRLTFRPLR 205
                 +V+       I R ++  LR
Sbjct: 177 TVSWVMKVLSSGARPPIIRYSWGTLR 202


>gi|313125351|ref|YP_004035615.1| rnase hii [Halogeometricum borinquense DSM 11551]
 gi|312291716|gb|ADQ66176.1| RNase HII [Halogeometricum borinquense DSM 11551]
          Length = 224

 Score =  107 bits (269), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 25/201 (12%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI--TSSAIISIS 84
            G DE G+G + GP+V AA+    + +P GI+DSK+++  +REE+ + +       + ++
Sbjct: 9   IGSDEAGKGPVLGPMVAAAVRAPADALPDGIDDSKRLTSAQREEIDQTLRGRDDVTVGVA 68

Query: 85  SASHQYIDKHNIHKATLDAIYHAVENLQVI--PRSALID---------GRSI-----PED 128
           +     ID       +L    H      V       + D         GR +      E 
Sbjct: 69  TIDPVRIDDPTTDMNSLTVAAHVAAVAAVAQDADEVVTDAGDVDESRFGRRVRTGVGDEG 128

Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQV 187
                 +  + D     + AAS++AKV RD LM    ++Y DYG     GYP+    ++ 
Sbjct: 129 TDVTVVSEHRADETYPHVGAASVVAKVRRDTLMETIGERYEDYG-PVGSGYPSDPTTREF 187

Query: 188 IKEK----GPSC-IHRLTFRP 203
           ++      G      R ++  
Sbjct: 188 LRTYVSETGELPDCARASWAT 208


>gi|260781395|ref|XP_002585798.1| hypothetical protein BRAFLDRAFT_233701 [Branchiostoma floridae]
 gi|229270848|gb|EEN41809.1| hypothetical protein BRAFLDRAFT_233701 [Branchiostoma floridae]
          Length = 301

 Score =  107 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 79/219 (36%), Gaps = 36/219 (16%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKIT 76
           K      GIDE GRG + GP+V                 G  DSK ++ ++RE+L+E I 
Sbjct: 25  KGEPCCLGIDEAGRGPVLGPMVYGICYCPLSGQDRLKDMGFADSKTLTEEQREKLFEAIA 84

Query: 77  SSAI---ISISSASHQYI-------DKHNIHKATLDAIYHAVE---NLQVIPRSALIDGR 123
            +      +I   +   I        K+N++  + D     ++   +  V  +   +D  
Sbjct: 85  GAGEFMGWTIHILAPNAISNCMLRRSKYNLNTLSHDTAIGLIQRTLDSGVNLQEVYVDTV 144

Query: 124 SIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG-- 172
                   +   +          K D+    ++AASI AKV RDR ++         G  
Sbjct: 145 GDATKYQDKLKGIFPDLDITVTPKADAKFPIVSAASICAKVARDRAVKGWTFFEEKDGNS 204

Query: 173 --FDSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRP 203
                  GYP+  + ++ +        G     R ++  
Sbjct: 205 ISRKFGSGYPSDPETKKWLASMVEPVFGFPQFVRFSWST 243


>gi|260794677|ref|XP_002592334.1| hypothetical protein BRAFLDRAFT_285333 [Branchiostoma floridae]
 gi|229277552|gb|EEN48345.1| hypothetical protein BRAFLDRAFT_285333 [Branchiostoma floridae]
          Length = 303

 Score =  107 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 79/219 (36%), Gaps = 36/219 (16%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKIT 76
           K      GIDE GRG + GP+V                 G  DSK ++ ++RE+L+E I 
Sbjct: 25  KGEPCCLGIDEAGRGPVLGPMVYGICYCPLSGQDRLKDMGFADSKTLTEEQREKLFEAIA 84

Query: 77  SSAI---ISISSASHQYI-------DKHNIHKATLDAIYHAVE---NLQVIPRSALIDGR 123
            +      +I   +   I        K+N++  + D     ++   +  V  +   +D  
Sbjct: 85  GAGEFMGWTIHILAPNAISNCMLRRSKYNLNTLSHDTAIGLIQRTLDSGVNLQEVYVDTV 144

Query: 124 SIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG-- 172
                   +   +          K D+    ++AASI AKV RDR ++         G  
Sbjct: 145 GDATKYQDKLKGIFPDLDITVTPKADAKFPIVSAASICAKVARDRAVKGWTFFEEKDGNT 204

Query: 173 --FDSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRP 203
                  GYP+  + ++ +        G     R ++  
Sbjct: 205 ISRKFGSGYPSDPETKKWLASMVEPVFGFPQFVRFSWST 243


>gi|5825611|gb|AAD53318.1|AF179372_1 ribonuclease HII [Trypanosoma brucei rhodesiense]
          Length = 377

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 10/106 (9%)

Query: 108 VENLQVIPRSALIDGRSIPEDL---------PCQAFAVIKGDSISL-SIAAASIIAKVTR 157
            +   V P   L+DG + P +                +I+GD  SL  IAAAS +AKV+R
Sbjct: 254 FDAEPVQPPLVLVDGHTAPYETVSVFTDVQTGGCVQPIIEGDKRSLTIIAAASCLAKVSR 313

Query: 158 DRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203
           D +M      YP Y F  + GYP   H + +K+ G S IHR ++RP
Sbjct: 314 DEIMDYLDPLYPKYHFAENKGYPVDHHMRAVKKHGLSSIHRRSYRP 359



 Score = 61.2 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 13/69 (18%)

Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAII-------------LDPNNIPFGINDSKKISHKK 67
          K  +   G DE GRG LAGPVV AA+              L   +  F I DSK +S  +
Sbjct: 27 KETFLTIGCDEAGRGPLAGPVVGAAVCRIPRSSFNNDLKALYDADEEFQIFDSKSVSETQ 86

Query: 68 REELYEKIT 76
          R+ +Y  IT
Sbjct: 87 RKVVYNNIT 95


>gi|255731726|ref|XP_002550787.1| ribonuclease HI 35 large subunit [Candida tropicalis MYA-3404]
 gi|240131796|gb|EER31355.1| ribonuclease HI 35 large subunit [Candida tropicalis MYA-3404]
          Length = 356

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 86/240 (35%), Gaps = 51/240 (21%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKRE 69
           E++V   +   V G+DE GRG + GP+V        +        +G  DSK ++  KRE
Sbjct: 68  ESIVANDSEPIVLGVDEAGRGPVLGPMVYGVAYALESFSDGLQKKYGFADSKVLTESKRE 127

Query: 70  ELYEKITSSA--------IISISSASHQYID----------------KHNIHKATLDAIY 105
           EL+  I  S+        +I  ++ S    D                    H  T++ I 
Sbjct: 128 ELFRLIEESSDNEKGLSKVIGWATTSMTARDISSGMLQSSGKGAYNLNSQAHDVTINLIK 187

Query: 106 HAVENLQVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVT 156
             V    V      +D    P     +   +          K DSI   ++AAS++AKVT
Sbjct: 188 Q-VLKKGVKISKIFVDTVGPPATYQAKLKGIFPDIEITVAKKADSIYPIVSAASVVAKVT 246

Query: 157 RDRLMRIAHKKYPDYGFDSHV---GYPTAKHQQVIKE------KGPSC-IHRLTFRPLRN 206
           RD+ +   +          H    GYP+  + +           G      R ++   ++
Sbjct: 247 RDKNIAYYNNHLDI--LKGHKLGSGYPSDPNTKTWLNSNVDSIFGWCFGFARFSWATAKD 304


>gi|55379775|ref|YP_137625.1| ribonuclease HII [Haloarcula marismortui ATCC 43049]
 gi|74516083|sp|Q5UXT4|RNH2_HALMA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|55232500|gb|AAV47919.1| RNAase HII [Haloarcula marismortui ATCC 43049]
          Length = 211

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/196 (26%), Positives = 76/196 (38%), Gaps = 24/196 (12%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSA 86
           G+DE G+G + G +  AA+  DP  +P G+ DSK I  ++RE L ++I  SA  + I+  
Sbjct: 4   GVDEAGKGPVLGSMFAAAVRADPAALPGGVGDSKDIRPERRERLAKEIRESADAVGIAEI 63

Query: 87  SHQYIDKHNIHKATLDAIYH-------AVENLQVIPRSALIDGRSIPE------DLPCQA 133
           S + ID       TL            A + L     +   D            D     
Sbjct: 64  SVERIDADETDMNTLTVEGQAEALSAVARDGLSGTVDAGDTDAARFGRRVADAVDTDVAV 123

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ-----VI 188
            A    D     + AASIIAKV RD  +     +Y D G     GYP+    +      +
Sbjct: 124 TAEHGADETDSLVGAASIIAKVARDTHVAELAAEYGDVG----SGYPSDPTTRTFLADYV 179

Query: 189 KEKGPSCI-HRLTFRP 203
              G      R ++  
Sbjct: 180 DRHGELPACARRSWST 195


>gi|72007775|ref|XP_782683.1| PREDICTED: similar to Ribonuclease H2, large subunit
           [Strongylocentrotus purpuratus]
 gi|115969873|ref|XP_001197209.1| PREDICTED: similar to Ribonuclease H2, large subunit
           [Strongylocentrotus purpuratus]
          Length = 324

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 78/214 (36%), Gaps = 42/214 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS- 82
           GIDE GRG + GP+V        +        G  DSK ++  +RE L + I  ++    
Sbjct: 55  GIDEAGRGPVLGPMVYGTSFCPISWNTQLGELGFADSKTLNEGQREALMKSIQDASDYMG 114

Query: 83  --ISSASHQYIDKHNI--HKATLDAIY--------HAVENLQVIPRSALIDGRSIPEDLP 130
             +   S  YI    +  +K +L+A+                V  +   +D     +   
Sbjct: 115 YKVEILSPNYIANSMLRRNKHSLNAVSMDSAIGLLRLALADGVQVKEVYVDTVGDAKKYQ 174

Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDR------LMRIAHKKYPDYGFDS 175
            +   +          K DS    ++AASI AKVTRDR       +        +YG   
Sbjct: 175 DKLKGLFPDLDITVCPKADSKFPIVSAASICAKVTRDRATTGWKFVEKNDIDKENYG--- 231

Query: 176 HVGYPT-AKHQQVIK-----EKGPSCIHRLTFRP 203
             GYP+    ++ +        G S   R ++  
Sbjct: 232 -SGYPSDPATKKWLAGNVDPVFGFSQFVRFSWST 264


>gi|226500696|ref|NP_001152248.1| ribonuclease HI large subunit [Zea mays]
 gi|195654267|gb|ACG46601.1| ribonuclease HI large subunit [Zea mays]
          Length = 284

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 26/172 (15%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK 74
                  + GIDE GRG + GP+V   +    +           DSK +  ++REEL+E 
Sbjct: 8   WATKEPCLMGIDEAGRGPVLGPMVYGCMYCAYSYNNTLATLKFADSKTLKEEQREELFES 67

Query: 75  IT-------SSAIISISSASHQYIDK------HNIHKATLDAIYHAVENLQVIPRSALID 121
           +           +I     S + + K      + I   +   +   V  + V+     +D
Sbjct: 68  LKVNSSIRWEVDVICPKDISAKMLKKKSKVNLNEISHNSAMGLVRKVLRMGVLLAEVYVD 127

Query: 122 GRSIPED---------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA 164
               PE          +  +     K DS+   I+ ASI+AKVTRDR +R  
Sbjct: 128 TVGDPEKYRTKLTEKFIGIKFVVAKKADSLYPVISGASIVAKVTRDRALRNW 179


>gi|328865315|gb|EGG13701.1| hypothetical protein DFA_11462 [Dictyostelium fasciculatum]
          Length = 665

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 91/255 (35%), Gaps = 60/255 (23%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKIS 64
           RP           N+   AGIDE G+G++ GP+VVA +++D          G+ DSK ++
Sbjct: 237 RPRLTPANKFNNYNINIYAGIDESGKGSVLGPLVVAIVVIDQPTSQLLRATGVKDSKALT 296

Query: 65  HKKREELYEKITSSAIIS-ISSASHQYIDKHN----IHKATLDAIYHAVENLQV------ 113
             +RE LY  IT  AI       S   ID+      +++  +      ++ L+       
Sbjct: 297 SAQRENLYSIITEKAIYYKTKIFSASDIDQRRKVQTLNQIEMGIFMELIDGLKQYYYENA 356

Query: 114 ----------------------IPRSAL------IDGRSIPEDLPCQAF--------AVI 137
                                  P   +      I+  S     P +            I
Sbjct: 357 SSEHLAQVMMSDDTDGDHADDSKPHHRITVEIDSIESNSQKFSYPLRQRYAGFANIVCEI 416

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK-HQQVIKEKGPS-- 194
           K D    S AAASI+AKVTRD+ +          G     GYP+ +     I     +  
Sbjct: 417 KADMTYTSTAAASIVAKVTRDKYIENLQS---QVGEPIGCGYPSDETTLSFIDRFYRANA 473

Query: 195 ---CIHRLTFRPLRN 206
                 R +++ + +
Sbjct: 474 FDHPEVRQSWKTISS 488


>gi|330791509|ref|XP_003283835.1| hypothetical protein DICPUDRAFT_26608 [Dictyostelium purpureum]
 gi|325086221|gb|EGC39614.1| hypothetical protein DICPUDRAFT_26608 [Dictyostelium purpureum]
          Length = 289

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 80/219 (36%), Gaps = 40/219 (18%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI 80
            + GIDE GRG + GP+V        +          NDSKK++ ++R  L++K+  S  
Sbjct: 17  FIMGIDEAGRGPVMGPLVYGCCFAPISETATISKMKFNDSKKLTEQQRNHLFQKMCDSNK 76

Query: 81  I---SISSASHQY----------IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP- 126
           I    +   S +           I  + I   +   +  +V +  +  +   +D    P 
Sbjct: 77  ILGFEVDVISPEILSEKMLLKKPISLNVISHESAMGLIRSVLSKGINVQELYLDTVGTPA 136

Query: 127 -------EDLPCQAFAVI--KGDSISLSIAAASIIAKVTRDRLMR-------IAHKKYPD 170
                     P  +  V+  K DS+   ++AASI AKV RD  +            +   
Sbjct: 137 TYQAMLKNHFPEISKIVVSKKADSLYPIVSAASICAKVIRDHEITSKNFDDLEIQDEDDQ 196

Query: 171 YGFDSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRP 203
              +   GYP+    +  + +      G     R ++  
Sbjct: 197 LSTEFGSGYPSDPVTKFWLTKNRDKVFGYPSFIRFSWST 235


>gi|115896475|ref|XP_001199108.1| PREDICTED: similar to Ribonuclease H2, large subunit
           [Strongylocentrotus purpuratus]
 gi|115950853|ref|XP_001185778.1| PREDICTED: similar to Ribonuclease H2, large subunit
           [Strongylocentrotus purpuratus]
          Length = 324

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 78/214 (36%), Gaps = 42/214 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS- 82
           GIDE GRG + GP+V        +        G  DSK ++  +RE L + I  ++    
Sbjct: 55  GIDEAGRGPVLGPMVYGTSFCPISWNTQLGELGFADSKTLNEGQREALMKSIQDASDYMG 114

Query: 83  --ISSASHQYIDKHNI--HKATLDAIY--------HAVENLQVIPRSALIDGRSIPEDLP 130
             +   S  YI    +  +K +L+A+                V  +   +D     +   
Sbjct: 115 YKVEILSPNYIANSMLRRNKHSLNAVSMDSAIGLLRLALADGVQVKEVYVDTVGDAKKYQ 174

Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDR------LMRIAHKKYPDYGFDS 175
            +   +          K DS    ++AASI AKVTRDR       +        +YG   
Sbjct: 175 DKLKGLFPDLDITVCPKADSKFPIVSAASICAKVTRDRATTGWKFVETNDFDKENYG--- 231

Query: 176 HVGYPT-AKHQQVIK-----EKGPSCIHRLTFRP 203
             GYP+    ++ +        G S   R ++  
Sbjct: 232 -SGYPSDPATKKWLAGNVDPVFGFSQFVRFSWST 264


>gi|71031853|ref|XP_765568.1| ribonuclease H1 large subunit [Theileria parva strain Muguga]
 gi|68352525|gb|EAN33285.1| ribonuclease H1 large subunit, putative [Theileria parva]
          Length = 277

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 89/222 (40%), Gaps = 43/222 (19%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKREELY 72
            K+   + GIDE GRG + GP+V         +           ++DSKK++   RE  +
Sbjct: 19  SKSDEVILGIDEAGRGPVLGPMVYGGFFCIKGDDCKSILKNKIRVDDSKKLTETMRENKF 78

Query: 73  EKITSSAI---ISISSASHQYI-------DKHNIHKATLDA---IYHAVENLQVIPRSAL 119
            ++        +     + QYI       DK+N+++ + D    I   V +     +   
Sbjct: 79  YQLNDPNYPFGVVAEVITPQYISYKMLQRDKYNLNEISHDTAISIIRHVLDHGYNLKEVY 138

Query: 120 IDGR--------SIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170
           ID           + +  P   F+V  K DSI  +++AASI+AKV RD +++        
Sbjct: 139 IDAVGTVNKYEAKLSKLFPKIHFSVREKADSIYPTVSAASIVAKVIRDNIIKNWK----- 193

Query: 171 YGFD---SHVGYPTAKHQQVI------KEKGPSCIHRLTFRP 203
           + F+      GYP   + +        K  G   I R ++  
Sbjct: 194 FDFEVENIGSGYPGDPYTKDFLTNNMDKIFGFPDIVRYSWST 235


>gi|255931627|ref|XP_002557370.1| Pc12g05230 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211581989|emb|CAP80150.1| Pc12g05230 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 343

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 77/234 (32%), Gaps = 54/234 (23%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELYEKIT-- 76
            V GIDE GRG + GP+V  A  L  +     +      +DSK ++   R  L   +   
Sbjct: 61  CVLGIDEAGRGPVLGPMVYGAFYLPLDLHHSLLTEKHSFDDSKVLTPAVRANLMHLLNTP 120

Query: 77  -----SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRSA 118
                 S   +I   S + I    +               AT++ I   VE+  V  R  
Sbjct: 121 GDSLFESCGYAIKVLSARDISSGMMRSPTAVYNLNAQAMDATVEIIRGVVEDRGVDVREV 180

Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
            ID    P     +   +          K DS+   ++AAS+ AKVTRD         Y 
Sbjct: 181 YIDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAKVTRD---VALEVMYE 237

Query: 170 DYGFDSH----------VGYPTAKHQQVIKEKGPSCIH------RLTFRPLRNL 207
                 H           GYP+         +    +       R ++   + +
Sbjct: 238 AVLQAEHSLSPTSETWGSGYPSDSKCVGWLRRNMDPVFGWGNECRFSWGTAKEM 291


>gi|66801163|ref|XP_629507.1| ribonuclease H2 subunit A [Dictyostelium discoideum AX4]
 gi|74896782|sp|Q54D13|RNH2A_DICDI RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A
 gi|60462898|gb|EAL61095.1| ribonuclease H2 subunit A [Dictyostelium discoideum AX4]
          Length = 289

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 85/219 (38%), Gaps = 40/219 (18%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI 80
            V GIDE GRG + GP+V        +          NDSKK++ ++R++L++K+  S  
Sbjct: 21  FVMGIDEAGRGPVMGPMVYGCCYAPISKSTTLKSMKFNDSKKLTEQQRDQLFDKMGESNK 80

Query: 81  I----------SISSASHQYIDKHNIHKATLD---AIYHAVENLQVIPRSALIDGRSIPE 127
           I           I S    Y    +++  + +    +  +V    V  +   +D    P+
Sbjct: 81  ILAYETDVITAEILSEKMLYKKPISLNVISHESAIGLIRSVLKKGVNVQELYLDTVGPPD 140

Query: 128 D--------LPCQAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKY-------PD 170
                     P     ++  K DS+   ++AASI AKV RD  +   +  Y         
Sbjct: 141 KYQLMLKKLFPEIGKIIVSKKADSLYPIVSAASIAAKVVRDFEITNKNFDYLNIYDQDEQ 200

Query: 171 YGFDSHVGYPTAKH-QQVI-----KEKGPSCIHRLTFRP 203
              D   GYP+    ++ +     K  G     R +++ 
Sbjct: 201 LSTDFGSGYPSDPLSKKWLVKNRDKVFGYPNFIRFSWKT 239


>gi|167394469|ref|XP_001740978.1| ribonuclease H2 subunit A [Entamoeba dispar SAW760]
 gi|165894666|gb|EDR22579.1| ribonuclease H2 subunit A, putative [Entamoeba dispar SAW760]
          Length = 270

 Score =  105 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/217 (23%), Positives = 76/217 (35%), Gaps = 38/217 (17%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAIISIS 84
            GIDE GRG + GP+V +A       I    G +DSK +S   RE+L+  I  SA+   S
Sbjct: 17  IGIDEAGRGPVLGPMVYSAFFTTNTEIISTMGFHDSKILSRTMREKLFSDIKESAVCGFS 76

Query: 85  --SASHQYIDKHNI-----------HKATLDAIYHAVENLQVIPRSALID---------- 121
               +  YI                  A  D I+  +   Q        D          
Sbjct: 77  TRILTPSYISHLMCGPQKVSLNEIAFGAVRDIIHQIIRINQRKIVHIYCDTVGPSGKYQM 136

Query: 122 --GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV-- 177
                  +    Q     K D +   ++AASI AKVTRD  +      Y +    +    
Sbjct: 137 MIANEFKDIKLNQITVCPKADGLYPVVSAASICAKVTRDTCLDNW--IYEERNIQTRKVG 194

Query: 178 -GYPTA-KHQQVIK-----EKGPSCIHRLTFRPLRNL 207
            GYP+     + +K       G   + R  +   + +
Sbjct: 195 CGYPSDIDTIKWMKCQYDPLFGYPNLVRFGWETSKRI 231


>gi|169859580|ref|XP_001836428.1| ribonuclease H2 subunit A [Coprinopsis cinerea okayama7#130]
 gi|116502486|gb|EAU85381.1| ribonuclease H2 subunit A [Coprinopsis cinerea okayama7#130]
          Length = 308

 Score =  105 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 77/241 (31%), Gaps = 42/241 (17%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDS 60
           S P    +   + +       + G+DE GRG + GP+V                 G  DS
Sbjct: 21  STPLTESYTYHSPLPTAPGPYILGVDEAGRGPVLGPLVYGVAYCPVAYKETLEELGFADS 80

Query: 61  KKISHKKREEL--------------YEKITSSAIISISSASHQYIDKHNIHKATLDAIYH 106
           K ++   R  L                 I   AI S                AT+  I  
Sbjct: 81  KTLTADTRSSLISTLCSDPSNLGWSVRVIAPQAISSGMLKKPPTNLNKQSQDATIGLIRQ 140

Query: 107 AVE-NLQVIPRSALIDGRS------IPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRD 158
            ++  + V        G +      +    P   F V  K DS    + AAS+ AKVTRD
Sbjct: 141 VIDKGINVTEVYVDALGNTSTYEAYLSSLFPGIDFTVANKADSKFKIVGAASVAAKVTRD 200

Query: 159 RLMRIAHKKYPDYG------FDS--HVGYPTAKHQQVIKE------KGPSCIHRLTFRPL 204
             +      + + G      +      GYP+  + Q   +       G   I R ++  +
Sbjct: 201 VCIEEW--VFEEDGGNAKSKWSKALGSGYPSDPNTQAWLKNAVDPVFGFPKIVRFSWSTV 258

Query: 205 R 205
           +
Sbjct: 259 K 259


>gi|330508333|ref|YP_004384761.1| ribonuclease HII [Methanosaeta concilii GP-6]
 gi|328929141|gb|AEB68943.1| ribonuclease HII [Methanosaeta concilii GP-6]
          Length = 210

 Score =  105 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 85/210 (40%), Gaps = 31/210 (14%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79
             + G DE G+G + G + VA +++D          G+ DSK +S  KRE L  KIT+ A
Sbjct: 1   MLLMGADEAGKGPVIGSMFVAGLVIDEERFFDLAVLGVKDSKMLSPAKREALARKITTIA 60

Query: 80  II-SISSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIPEDLPCQA--- 133
               I     + ID+  +     D +  +   +  ++    A++D   +  +   QA   
Sbjct: 61  TDQYILEVRAEVIDELRLVMTMNDIMVRSFSQVVGRLHADRAILDAADVNAERFAQAVRN 120

Query: 134 --------FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----T 181
                    A  K D     ++AASI+AKV RDR MR    +          GYP    T
Sbjct: 121 HSKTSMDLIAEHKADQRHHVVSAASILAKVRRDRSMRELENEM---HCKIGSGYPHDRDT 177

Query: 182 AKHQ-QVIKE---KGPSCIHRLTFRPLRNL 207
                + ++E     P    R ++   + +
Sbjct: 178 IAFLSEWVRENKDLPPCA--RHSWTTAQRI 205


>gi|317137770|ref|XP_001727941.2| ribonuclease H2 subunit A [Aspergillus oryzae RIB40]
          Length = 351

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 82/236 (34%), Gaps = 52/236 (22%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP------FGINDSKKISHKKREELYEKIT- 76
           + V G+DE GRG + GP+V +A  L  +         +  NDSK ++   R  L   +  
Sbjct: 66  YFVLGVDEAGRGPVLGPMVYSAFYLPHDLHHSLLARDYNFNDSKVLTPGVRANLMRLLCT 125

Query: 77  ------SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRS 117
                  S   +    S + I    +               AT++ I   VE  +V  R 
Sbjct: 126 PGTPLFESCGWATKLLSARDISSGMMRPGAGVYNLNAQAMDATVELIREIVEGRKVDIRE 185

Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHK-K 167
             ID    P     +   +          K DS+   ++AAS+ AKVTRD  + + H+  
Sbjct: 186 VYIDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAKVTRDVALELCHEDI 245

Query: 168 YPDYGFDS----------HVGYPTAKHQQVIKEKGPSCIH------RLTFRPLRNL 207
                FD             GYP+         +    I       R ++   + +
Sbjct: 246 VKAQQFDDPSQATSTESWGSGYPSDSKCVGWLRRNMDPIFGWGNECRFSWGTSKEM 301


>gi|83770969|dbj|BAE61102.1| unnamed protein product [Aspergillus oryzae]
          Length = 363

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 82/236 (34%), Gaps = 52/236 (22%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP------FGINDSKKISHKKREELYEKIT- 76
           + V G+DE GRG + GP+V +A  L  +         +  NDSK ++   R  L   +  
Sbjct: 78  YFVLGVDEAGRGPVLGPMVYSAFYLPHDLHHSLLARDYNFNDSKVLTPGVRANLMRLLCT 137

Query: 77  ------SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRS 117
                  S   +    S + I    +               AT++ I   VE  +V  R 
Sbjct: 138 PGTPLFESCGWATKLLSARDISSGMMRPGAGVYNLNAQAMDATVELIREIVEGRKVDIRE 197

Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHK-K 167
             ID    P     +   +          K DS+   ++AAS+ AKVTRD  + + H+  
Sbjct: 198 VYIDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAKVTRDVALELCHEDI 257

Query: 168 YPDYGFDS----------HVGYPTAKHQQVIKEKGPSCIH------RLTFRPLRNL 207
                FD             GYP+         +    I       R ++   + +
Sbjct: 258 VKAQQFDDPSQATSTESWGSGYPSDSKCVGWLRRNMDPIFGWGNECRFSWGTSKEM 313


>gi|50551451|ref|XP_503199.1| YALI0D23661p [Yarrowia lipolytica]
 gi|49649067|emb|CAG81399.1| YALI0D23661p [Yarrowia lipolytica]
          Length = 315

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 81/222 (36%), Gaps = 43/222 (19%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHKKREELYEKIT--- 76
            + G+DE GRG + G +V                  G  DSK ++ +KR  L  +I    
Sbjct: 42  CILGVDEAGRGPVLGSMVYGLAYCTKEFADEELSKTGFADSKTLTAEKRSALMREICCDE 101

Query: 77  ---SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRSALI 120
                     +S + Q I    +                T  A+   V +  V+   A I
Sbjct: 102 TLVEHLGWCTTSMTAQDISSAMLRPMSRGVYNLNDQAHDTTMALIQGVLDRGVLLTEAYI 161

Query: 121 DGRSIP--------EDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171
           D    P        +  P   F V  K DS+   ++AASI AKVTRD  ++        +
Sbjct: 162 DTVGPPASYTAKLSKQFPHIKFTVTKKADSLFPIVSAASICAKVTRDMDLKSQDLSEGTW 221

Query: 172 GFDSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207
           G     GYP+  K    +K       G   + R +++  ++L
Sbjct: 222 G----SGYPSDPKTSVWLKSHVDQVFGWMPVVRFSWQTAKDL 259


>gi|295132558|ref|YP_003583234.1| ribonuclease HII [Zunongwangia profunda SM-A87]
 gi|294980573|gb|ADF51038.1| ribonuclease HII [Zunongwangia profunda SM-A87]
          Length = 73

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 40/59 (67%)

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202
           +SIA ASI+AK  RD  M I H++YP Y +  + GYPT +H++ I++ G +  HR +F+
Sbjct: 1   MSIATASILAKTYRDEYMEIIHEEYPIYNWKKNKGYPTKEHREAIRKYGITKYHRKSFK 59


>gi|296422347|ref|XP_002840722.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636945|emb|CAZ84913.1| unnamed protein product [Tuber melanosporum]
          Length = 336

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 87/224 (38%), Gaps = 45/224 (20%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKIT---- 76
            + G+DE GRG + GP+V A      ++ P       +DSKK++H  R  L + +T    
Sbjct: 63  VILGVDEAGRGPVLGPMVYAVAYCLKSDNPMLREHKFDDSKKLTHSLRTHLLQTLTTPDT 122

Query: 77  ---SSAIISISSASHQYID----KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED- 128
               +   S  S S + I     +     +T +    A +    +  + L  G +I E  
Sbjct: 123 TLHRNLGWSTISLSPRDISSGMLRSTTSSSTYNLNAQAFDATTTLITAVLSSGVNIREIY 182

Query: 129 -----------------LPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170
                             P  A  V  K DSI   ++AAS+ AKVTRD  + +     P+
Sbjct: 183 VDTVGTASTYQSRLQKLFPHIAVTVSKKADSIYPIVSAASVCAKVTRDAAIGVL---VPE 239

Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIH-------RLTFRPLRNL 207
            G +   GYP  +  +    +    +        R ++   R++
Sbjct: 240 -GEEIGSGYPGDEKTKEWLRREMEPVFGWEVGMARFSWATARDM 282


>gi|167378158|ref|XP_001734698.1| ribonuclease H2 subunit A [Entamoeba dispar SAW760]
 gi|165903720|gb|EDR29164.1| ribonuclease H2 subunit A, putative [Entamoeba dispar SAW760]
          Length = 270

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 51/217 (23%), Positives = 76/217 (35%), Gaps = 38/217 (17%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAIISIS 84
            GIDE GRG + GP+V +A       I    G +DSK +S   RE+L+  I  SA+   S
Sbjct: 17  IGIDEAGRGPVLGPMVYSAFFTTNTEIISTMGFHDSKILSRTMREKLFSDIKESAVCGFS 76

Query: 85  --SASHQYIDKHNI-----------HKATLDAIYHAVENLQVIPRSALID---------- 121
               +  YI                  A  D I+  +   Q        D          
Sbjct: 77  TRILTPSYISHLMCGPQKVSLNEIAFGAVRDIIHQIIRISQRKIVHIYCDTVGPSGKYQM 136

Query: 122 --GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS---H 176
                  +    Q     K D +   ++AASI AKVTRD  +      Y +    +    
Sbjct: 137 MIANEFKDIKLNQITVCPKADGLYPVVSAASICAKVTRDTCLDNW--IYEERNIQTKQVG 194

Query: 177 VGYPTA-KHQQVIK-----EKGPSCIHRLTFRPLRNL 207
            GYP+     + +K       G   + R  +   + +
Sbjct: 195 CGYPSDIDTIKWMKCQYDPLFGYPNLVRFGWETSKRI 231


>gi|320100359|ref|YP_004175951.1| ribonuclease HII [Desulfurococcus mucosus DSM 2162]
 gi|319752711|gb|ADV64469.1| ribonuclease HII [Desulfurococcus mucosus DSM 2162]
          Length = 255

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 89/213 (41%), Gaps = 35/213 (16%)

Query: 27  AGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS-SAII 81
            G+DE GRG   G +V+  +I       + +  G+ DSK +    R EL+ +I S +  I
Sbjct: 9   IGVDEAGRGPFVGDMVIVGVIGPSRVFESLVSIGLKDSKALEPVARRELFWEILSSNVDI 68

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAV--------------ENLQVIPRSALIDGRSIPE 127
                S   ID+ N+++     I   +               +L++        G S+ E
Sbjct: 69  VAWLVSPFTIDRGNMNELEYIRICRILKLLSYSRLARSKPGNSLRIYVDEVKGYGESVRE 128

Query: 128 ---DLPCQAFAVI---KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
               +  +   V+   + D+   +++AAS+IAKV RDR + +  K     G     GYP+
Sbjct: 129 CAMRIYGEHVEVVMEPEADARYPAVSAASVIAKVIRDRNIDVLGKITGGLG----SGYPS 184

Query: 182 -AKHQQVIKE-KG----PSCIHRLTFRPLRNLS 208
               +  +    G    P    R ++  +R+++
Sbjct: 185 DPASRAWLATIYGRWDKPPVFIRRSWGIVRDIA 217


>gi|156082533|ref|XP_001608751.1| ribonuclease H [Babesia bovis T2Bo]
 gi|154796000|gb|EDO05183.1| ribonuclease H, putative [Babesia bovis]
          Length = 264

 Score =  104 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 81/218 (37%), Gaps = 42/218 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKREE---------- 70
           GIDE GRG + GP+V  + +    +          G++DSKK++   R+           
Sbjct: 6   GIDEAGRGPVLGPMVYGSFVCPIGDEYRRMLKDNIGVDDSKKLTASLRDSKFRALNGPET 65

Query: 71  ----LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
                 E IT    IS      +  + +NI   +  A+     +         +D     
Sbjct: 66  PFAMCAEVITPR-YISYKMLQREAYNLNNISHDSAIALIRYYISQGFNITEVYVDAVGPA 124

Query: 127 EDL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                         +     K DSI   ++AASI+AKV RD ++    K  P+   D   
Sbjct: 125 AKYEAMLTQLFPKIKCVVANKADSIFPVVSAASIVAKVIRDNIIDSWFKDSPE-RVDVGS 183

Query: 178 GYP----TAK----HQQVIKEKGPSCIHRLTFRPLRNL 207
           GYP    T +    H   +   G S   R+++   +++
Sbjct: 184 GYPGDPVTKQFLSSHLDRL--FGFSSFVRVSWSTAKSI 219


>gi|19114596|ref|NP_593684.1| ribonuclease H2 complex subunit Rnh201 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|1723422|sp|Q10236|RNH2A_SCHPO RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
           AltName: Full=Ribonuclease HI large subunit; Short=RNase
           HI large subunit; AltName: Full=Ribonuclease HI subunit
           A
 gi|1204203|emb|CAA93552.1| ribonuclease H2 complex subunit Rnh201 (predicted)
           [Schizosaccharomyces pombe]
          Length = 326

 Score =  104 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 85/218 (38%), Gaps = 42/218 (19%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKIT-------SS 78
           G+DE GRG + GP+V A      +     +G  DSK ++  KREEL + I         +
Sbjct: 67  GVDEAGRGPVLGPMVYAVAYCPVDFDLTNYGFADSKTLASLKREELLKLICNKSNELGKN 126

Query: 79  AIISISSASHQYI--------DKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPE 127
              S  S S + +        +K+N++    D     ++ +    +      +D    P 
Sbjct: 127 VGWSTMSISARELAAGMLRYRNKYNLNLQAHDTTIDLIKKVYESGINVTEIYVDTVGPPI 186

Query: 128 DLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
               +  A           K DS+   ++ ASI AKVTRD  +  A +      +    G
Sbjct: 187 SYQEKLQAHFPQAKVTVTKKADSLFPIVSLASICAKVTRDIQLECARESIRTENW--GSG 244

Query: 179 YPTAKH-QQVIKE--------KGPSCIHRLTFRPLRNL 207
           Y +     + +K         KG   I R +++  ++L
Sbjct: 245 YSSDARTTEWLKVNVDKIFGWKG--DIVRYSWKTAKDL 280


>gi|320582951|gb|EFW97168.1| ribonuclease HI large subunit [Pichia angusta DL-1]
          Length = 303

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 88/229 (38%), Gaps = 45/229 (19%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELY 72
           +   N   + G+DE GRG + GP+V        +        +G  DSK ++ ++R++L 
Sbjct: 34  LESPNEPVILGVDEAGRGPVLGPMVYGIAYCLKDYSSDLKSVYGFADSKTLTVERRDQLM 93

Query: 73  EKITS----------SA-------IISISSASHQYIDKHNIHKATLDAIYHAVENL---Q 112
           + I             A        IS      + I   N+++   DA    ++ +   +
Sbjct: 94  KSIIEPDGDLCQNVGWATTTMTARDISSEMLKPRLIGNINLNEQAHDATIKLIQGVLDQK 153

Query: 113 VIPRSALIDGRSIPEDL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163
           V  +   +D    P+             +     K DS+   ++ ASI+AKVTRD  +  
Sbjct: 154 VNLKEVYVDTVGPPDSYQRKLSSRFPGIKVTVTKKADSLFPIVSTASIVAKVTRDCSLYY 213

Query: 164 AHKKYPDYGFDSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRN 206
                   G D   GYP+  +  Q +        G + + R +++  R+
Sbjct: 214 LAD-----GADWGSGYPSDPRTSQWLNSNVHPVFGWNSMVRFSWQTSRD 257


>gi|119496273|ref|XP_001264910.1| ribonuclease HI large subunit [Neosartorya fischeri NRRL 181]
 gi|119413072|gb|EAW23013.1| ribonuclease HI large subunit [Neosartorya fischeri NRRL 181]
          Length = 363

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 84/240 (35%), Gaps = 60/240 (25%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP------FGINDSKKISHKKREELYEKIT- 76
           + V G+DE GRG + GP+V +A  +            +  NDSK ++   R  L   +  
Sbjct: 76  YFVLGVDEAGRGPVLGPMVYSAFYIPHTLHHSLLARDYSFNDSKVLTPGVRANLMRLLCT 135

Query: 77  ------SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRS 117
                 +S   +    S + I    +               AT++ I   VE  +V  R 
Sbjct: 136 AGNPLHASCGWATKVLSARDISAGMMRPASGAYNLNAQAMDATVEIIRGIVEERRVDIRE 195

Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
             ID    P     +   +          K D++   ++AAS++AKVTRD  +   H+  
Sbjct: 196 VYIDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAKVTRDVALEFCHE-- 253

Query: 169 PDYGFDS-------------HVGYPTAK--------HQQVIKEKGPSCIHRLTFRPLRNL 207
             YG                  GYP+          H   I   G  C  R ++   + +
Sbjct: 254 AVYGLQRSEAPSLGVATDSWGSGYPSDSKCVSWLRNHMDPIFGWGNEC--RFSWGTAKEM 311


>gi|261886381|ref|ZP_06010420.1| ribonuclease HII [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 102

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 43/69 (62%)

Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192
              ++K DS    ++AASIIAKV+RDR MR   K YPD+G+  H GY    H + +K+ G
Sbjct: 24  IKTIVKADSSVPQVSAASIIAKVSRDRQMRRFDKIYPDFGYAKHKGYGVKAHIEALKQHG 83

Query: 193 PSCIHRLTF 201
            + + RL+F
Sbjct: 84  SNELTRLSF 92


>gi|159130978|gb|EDP56091.1| ribonuclease HI large subunit [Aspergillus fumigatus A1163]
          Length = 363

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 84/240 (35%), Gaps = 60/240 (25%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP------FGINDSKKISHKKREELYEKIT- 76
           + V G+DE GRG + GP+V +A  +            +  NDSK ++   R  L   +  
Sbjct: 76  YFVLGVDEAGRGPVLGPMVYSAFYIPHTLHHSLLARDYSFNDSKVLTPGVRANLMRLLCT 135

Query: 77  ------SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRS 117
                 +S   +    S + I    +               AT++ I   VE  +V  R 
Sbjct: 136 AGNPLHASCGWATKVLSARDISAGMMRPTSGAYNLNAQAMDATVEIIRGIVEERRVDIRE 195

Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
             ID    P     +   +          K D++   ++AAS++AKVTRD  +   H+  
Sbjct: 196 VYIDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAKVTRDMALEFCHE-- 253

Query: 169 PDYGFDS-------------HVGYPTAK--------HQQVIKEKGPSCIHRLTFRPLRNL 207
             YG                  GYP+          H   I   G  C  R ++   + +
Sbjct: 254 AVYGLQRYEAPSMEVATDSWGSGYPSDSKCVSWLRNHMDPIFGWGNEC--RFSWGTAKEM 311


>gi|70991314|ref|XP_750506.1| ribonuclease HI large subunit [Aspergillus fumigatus Af293]
 gi|66848138|gb|EAL88468.1| ribonuclease HI large subunit [Aspergillus fumigatus Af293]
          Length = 363

 Score =  103 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 84/240 (35%), Gaps = 60/240 (25%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP------FGINDSKKISHKKREELYEKIT- 76
           + V G+DE GRG + GP+V +A  +            +  NDSK ++   R  L   +  
Sbjct: 76  YFVLGVDEAGRGPVLGPMVYSAFYIPHTLHHSLLARDYSFNDSKVLTPGVRANLMRLLCT 135

Query: 77  ------SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRS 117
                 +S   +    S + I    +               AT++ I   VE  +V  R 
Sbjct: 136 AGNPLHASCGWATKVLSARDISAGMMRPTSGAYNLNAQAMDATVEIIRGIVEERRVDIRE 195

Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
             ID    P     +   +          K D++   ++AAS++AKVTRD  +   H+  
Sbjct: 196 VYIDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAKVTRDMALEFCHE-- 253

Query: 169 PDYGFDS-------------HVGYPTAK--------HQQVIKEKGPSCIHRLTFRPLRNL 207
             YG                  GYP+          H   I   G  C  R ++   + +
Sbjct: 254 AVYGLQRYEAPSMEVATDSWGSGYPSDSKCVSWLRNHMDPIFGWGNEC--RFSWGTAKEM 311


>gi|183232283|ref|XP_655093.2| RNase HI large subunit [Entamoeba histolytica HM-1:IMSS]
 gi|169802113|gb|EAL49706.2| RNase HI large subunit, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 270

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/217 (23%), Positives = 76/217 (35%), Gaps = 38/217 (17%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAIISIS 84
            GIDE GRG + GP+V +A       +    G +DSK +S   RE+L+  I  S +   S
Sbjct: 17  IGIDEAGRGPVLGPMVYSAFFTTNTEVISTMGFHDSKILSRTMREKLFTDIKESGVCGFS 76

Query: 85  --SASHQYIDKHNI-----------HKATLDAIYHAVENLQVIPRSALID---------- 121
               +  YI +                A  D I+  +   Q        D          
Sbjct: 77  TRILTPSYISQMMCGPQKVSLNEIAFSAVRDIIHQIIRTSQRKIVHIYCDTVGPSKKYQA 136

Query: 122 --GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS---H 176
                  E    Q     K D +   ++AASI AKVTRD  +      Y +    +    
Sbjct: 137 MIANEFKEVKLSQITVCPKADGLYPVVSAASICAKVTRDTCLDNW--IYEETNIQTRQVG 194

Query: 177 VGYPTAK-HQQVIK-----EKGPSCIHRLTFRPLRNL 207
            GYP+     + +K       G   + R  +   + +
Sbjct: 195 CGYPSDVDTIKWMKCQYDPLFGYPNLVRFGWETSKRI 231


>gi|269986419|gb|EEZ92706.1| ribonuclease HII [Candidatus Parvarchaeum acidiphilum ARMAN-4]
          Length = 218

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/210 (27%), Positives = 87/210 (41%), Gaps = 35/210 (16%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREEL-YEKITSSAII 81
            GIDE GRG + GP+ +A I +  +        G+ DSK +S K+   L  E I SS   
Sbjct: 4   IGIDEAGRGPVIGPMTIAGIGIGEDLAQKFKLIGVKDSKMLSIKRIYLLEREIIKSSNNF 63

Query: 82  SISSASHQYIDKH-----NIHKATLDAIYHAVENLQVIPRSALIDG---RSIPEDL---- 129
            +   S + ID       N++   LD +     NL     + +ID     +    L    
Sbjct: 64  KVIKLSAEEIDNRFENGKNLNYLELDNMAEIANNLAG--ETVVIDSPSRNTEKIRLYLSK 121

Query: 130 ---PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQ 185
                +  A    D   + ++AASIIAK  R+R +    K+    G+D   GYP+  K  
Sbjct: 122 KIKDKKIIAENYADKNHIEVSAASIIAKANREREVEKIKKEL---GYDFGSGYPSDPKTI 178

Query: 186 QVIK---------EKGPSCIHRLTFRPLRN 206
           Q IK         ++      R T+  ++N
Sbjct: 179 QFIKIITENERINQEPYKKFVRKTWNTVKN 208


>gi|289810861|ref|ZP_06541490.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 66

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/66 (56%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
           LIDG   PE LP  + AV+KGDS    I+AASI+AKVTRD  M      +P YGF  H G
Sbjct: 2   LIDGNRCPE-LPVPSMAVVKGDSRVAEISAASILAKVTRDAEMAALDIVFPQYGFAQHKG 60

Query: 179 YPTAKH 184
           YPTA H
Sbjct: 61  YPTAFH 66


>gi|115385935|ref|XP_001209514.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114187961|gb|EAU29661.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 339

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 80/234 (34%), Gaps = 50/234 (21%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP------FGINDSKKISHKKREELYEKIT- 76
           + V G+DE GRG + GP+V +A  L  +         +  +DSK ++   R  L   +  
Sbjct: 57  YFVLGVDEAGRGPVLGPMVYSAFYLPHDLHHSLLAQKYSFDDSKVLTPAVRLNLMRTLCT 116

Query: 77  ------SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRS 117
                  S   +    + Q I    +               AT++ I   VE  +V  R 
Sbjct: 117 PGTPLFESCGWATKLLTAQDISSGMMRPAAAAYNLNAQAMDATIEIIRGIVEERKVNVRE 176

Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRI-AHKK 167
             ID    P     +   +          K DS+   ++AAS+ AKVTRD  + +   + 
Sbjct: 177 VYIDTIGNPASYQQKLERIFPTLKITVAKKADSLYPCVSAASVAAKVTRDIALELCYEEI 236

Query: 168 YPDYGFDS--------HVGYPTAKHQQVIKEKGPSCIH------RLTFRPLRNL 207
                 D           GYP+         +    +       R ++   + +
Sbjct: 237 MKAKSLDQSQTTTDTWGSGYPSDSKCVGWLRRNMDPVFGWGNECRFSWGTAKEM 290


>gi|170099025|ref|XP_001880731.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644256|gb|EDR08506.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 302

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 75/228 (32%), Gaps = 55/228 (24%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80
            + G+DE GRG + GP+V            +    G  DSK ++   R  L   ++S   
Sbjct: 34  YIVGVDEAGRGPVLGPLVYGIAYCPASYKEDMEELGFADSKTLNSDTRLSLLNTLSSQPE 93

Query: 81  ---ISISSASHQYID-----------KHNIHKATLDAIYHAVENLQVIPRSALIDGRS-- 124
               S+   S Q I                  AT+  +   V    +      +D     
Sbjct: 94  NLGWSVRVVSPQAISSGMLCRPPTNLNRQSQDATILLLRE-VLAKGIQVSEVYVDALGTT 152

Query: 125 ------IPEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH- 176
                 +    P   F V  K DS    + AAS+ AKVTRD  +         + F+ + 
Sbjct: 153 TTYEAYLSSLFPGIDFTVTTKADSKFKIVGAASVAAKVTRDACVE-------GWTFEENI 205

Query: 177 -------------VGYPTAKHQQVIKE------KGPSCIHRLTFRPLR 205
                         GYP+  + Q   +       G   + R ++  ++
Sbjct: 206 GKEGDKWSNATLGSGYPSDPNTQAWLKGSVDPVFGFPKLVRFSWTTVK 253


>gi|254565155|ref|XP_002489688.1| Ribonuclease H2 catalytic subunit, removes RNA primers during
           Okazaki fragment synthesis [Pichia pastoris GS115]
 gi|238029484|emb|CAY67407.1| Ribonuclease H2 catalytic subunit, removes RNA primers during
           Okazaki fragment synthesis [Pichia pastoris GS115]
 gi|328350107|emb|CCA36507.1| ribonuclease H2 subunit A [Pichia pastoris CBS 7435]
          Length = 314

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 93/231 (40%), Gaps = 41/231 (17%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREE 70
           E++++        G+DE GRG + GP+V          +P    FG  DSK ++ +KR E
Sbjct: 40  ESVLKNPEKPCCLGVDEAGRGPVVGPMVYGVSYCLEEYEPRLKDFGFADSKTLTEQKRSE 99

Query: 71  LYEKITS----------SAIISISS--ASHQYIDKHNIHKATLDAIYH--------AVEN 110
           L E + +           A  SIS+   S   +  HNI    L+   H         V  
Sbjct: 100 LLESLCNGDHELRKNVGWATTSISACDISSAMLKPHNIGNYNLNEQAHDVTMELIDKVIQ 159

Query: 111 LQVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLM 161
             V  R   +D    P     +              K D+I   +++AS+ AKVTRD  +
Sbjct: 160 KGVNLRHVYVDTVGPPASYQKKLQQRFPALLITVSKKADAIYPCVSSASVCAKVTRDVCL 219

Query: 162 RIAHKKYPDYGFDSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRN 206
           R ++ +  +   D   GYP+    ++ + +      G S   R +++  ++
Sbjct: 220 RTSNGE--ENLLDCGSGYPSDPNTKKWLAQSIHPLFGWSRDVRFSWQTAKD 268


>gi|157876580|ref|XP_001686636.1| ribonuclease H [Leishmania major strain Friedlin]
 gi|23477654|gb|AAN34793.1| ribonuclease H(35) [Leishmania major]
 gi|56713264|gb|AAW23359.1| ribonuclease HIIB [Leishmania major]
 gi|68129711|emb|CAJ09017.1| putative ribonuclease H [Leishmania major strain Friedlin]
          Length = 301

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 83/225 (36%), Gaps = 51/225 (22%)

Query: 24  WPVAGIDEVGRGALAGPVVV-AAII-LDPNNIPF---GINDSKKISHKKREELYEKITSS 78
           + V GIDE GRG + GP+V   A+I L  ++       + DSK ++ ++R    +++   
Sbjct: 44  YLVLGIDEAGRGPVIGPMVYTGAVISLGEHDDLVRLCHVADSKMLNERRRLASLQQLRQL 103

Query: 79  AII--SISSASHQYIDKHNI-----------HKATLDAIYHAVENLQVIPRSALIDGRSI 125
                     S + I K              H+  +  I  A         +A +D    
Sbjct: 104 KTFRSFTVCVSPEEISKTMTGRSGRNSNTLSHETAIQIISEATLASAGKLCAAYVDTVGP 163

Query: 126 PEDLPC---------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
           PE             +     K DSI   ++AASI+AK  RD  +    +       +  
Sbjct: 164 PETYQARLAGRFPHLRVTVAKKADSIFPIVSAASIVAKTVRDTAIEALGE-------NIG 216

Query: 177 VGYPT-AKHQQVIKEKGPSCIH------------RLTFRPLRNLS 208
            GYP+  +  + ++      +H            R ++ PL  L+
Sbjct: 217 SGYPSDPRTMEWLRSH----VHRFFSFPHAYDFARHSWGPLVQLA 257


>gi|302683973|ref|XP_003031667.1| hypothetical protein SCHCODRAFT_55770 [Schizophyllum commune H4-8]
 gi|300105360|gb|EFI96764.1| hypothetical protein SCHCODRAFT_55770 [Schizophyllum commune H4-8]
          Length = 286

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 86/232 (37%), Gaps = 37/232 (15%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSK 61
            P    +   A +   +   + G+DE GRG + GP+V     +           G  DSK
Sbjct: 11  FPLTASYTYHAPIPTASGKYILGVDEAGRGPVLGPLVYGVAYVAETGKERMEAMGFADSK 70

Query: 62  KISHKKREELYEKITSSAI---ISISSASHQYID-------KHNIHKATLDAI---YHAV 108
            +   +RE L E + S+      ++   S Q +          N+++ + DA       V
Sbjct: 71  TLDAARREALLETLCSAPDVLGWAVRVISPQALSSGMLRRPPTNLNEQSRDATVMLIRGV 130

Query: 109 ENLQVIPRSALIDGRS--------IPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDR 159
               +   +  +D           + +  P   F V  K DS    + AAS+ AKVTRD 
Sbjct: 131 LARGIQLSAVFVDALGPTVAYEQWLSQRFPEIKFTVANKADSKFKIVGAASVAAKVTRDA 190

Query: 160 LMRIAHKKYPDYGFDSHVGYPT-AKHQQVIK-----EKGPSCIHRLTFRPLR 205
           L+     ++P    +   GYP+  K +  +        G     R ++   +
Sbjct: 191 LID--ASRFPA---ERGSGYPSDPKTKAWLAAAVEPTFGFPRAVRFSWATSK 237


>gi|154318955|ref|XP_001558795.1| hypothetical protein BC1G_02429 [Botryotinia fuckeliana B05.10]
 gi|150856860|gb|EDN32052.1| hypothetical protein BC1G_02429 [Botryotinia fuckeliana B05.10]
          Length = 1493

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 82/228 (35%), Gaps = 48/228 (21%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGIN------DSKKISHKKREELYEKIT----- 76
           GIDE GRG + GP+V     L        +       DSK ++   R EL EK+      
Sbjct: 70  GIDEAGRGPVLGPMVYGLFYLPLPLSDPLLRNTHHFDDSKVLTPTVRSELMEKLCTPGSD 129

Query: 77  --SSAIISISSASHQYIDKHNIHKATLDAIYHA----------VENLQVIPRSALIDG-- 122
             +    ++   S + I  + +  AT +    A          V +  V  +   ID   
Sbjct: 130 LYTQCGWAVDVMSARDIGANMMKPATYNLNAQAMDSTIALIQGVMDKGVNVKEIYIDALG 189

Query: 123 ------RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
                 + +    P     V  K DS+   ++AAS+ AKVTRD  +   ++ Y +   D 
Sbjct: 190 NTVTYQKKLERIFPTAQITVAKKADSLYPCVSAASVCAKVTRDAALESLYESYMNKDGDQ 249

Query: 176 ----------HVGYPTAKHQQVIKEKGPSCIH------RLTFRPLRNL 207
                       GYP+        ++    I       R ++   +++
Sbjct: 250 KMGGTEEDSWGSGYPSDARATTWLKRNMDPIFGWGSECRFSWGTTKDM 297


>gi|121702279|ref|XP_001269404.1| ribonuclease HI large subunit [Aspergillus clavatus NRRL 1]
 gi|119397547|gb|EAW07978.1| ribonuclease HI large subunit [Aspergillus clavatus NRRL 1]
          Length = 362

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 89/247 (36%), Gaps = 57/247 (23%)

Query: 16  AMVREKN--MWPVAGIDEVGRGALAGPVVVAAIILDPNNIP------FGINDSKKISHKK 67
           + + E     + V G+DE GRG + GP+V +A  L            +  +DSK ++   
Sbjct: 67  SSLSEHGSSEYFVLGVDEAGRGPVLGPMVYSAFYLPHTLHHSLLARDYSFDDSKVLTAGV 126

Query: 68  REELYEKIT-------SSAIISISSASHQYIDKHNIH-------------KATLDAIYHA 107
           R  L   +        +S   +    S + I    +               AT++ I   
Sbjct: 127 RANLMRLLCTAGNPLHASCGWATKLLSARDISSGMMRPGSGVYNLNAQAMDATVEIIRGI 186

Query: 108 VENLQVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRD 158
           VE  +V  R   ID    P     +   +          K DS+   ++AAS+ AKVTRD
Sbjct: 187 VEERKVDVREVYIDTIGNPATYQQKLERIFPTLKITVAKKADSLYPCVSAASVAAKVTRD 246

Query: 159 RLMRIAHKKYP---------DYGFDS-HVGYPTA--------KHQQVIKEKGPSCIHRLT 200
             + + H  +          +   DS   GYP+         KH   +   G  C  R +
Sbjct: 247 VALELCHDAFQALQQLETSHEMATDSWGSGYPSDSKCVNWLRKHMDPVFGWGNEC--RFS 304

Query: 201 FRPLRNL 207
           +   + +
Sbjct: 305 WGTSKEM 311


>gi|212538023|ref|XP_002149167.1| ribonuclease HI large subunit [Penicillium marneffei ATCC 18224]
 gi|210068909|gb|EEA23000.1| ribonuclease HI large subunit [Penicillium marneffei ATCC 18224]
          Length = 368

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 35/169 (20%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELYEKIT-- 76
            V G+DE GRG + GP+V +A  L  +         +  +DSK ++   R  L + I   
Sbjct: 71  CVLGVDEAGRGPVLGPMVYSAFYLPKHLERPLLTEEYSFDDSKVLTPVVRARLMQSICTP 130

Query: 77  -----SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRSA 118
                 S   ++   S + I    +               AT++ I   +    +     
Sbjct: 131 GASLHDSCGWAVKLLSARDISAGMMRPSTGVYNLNAQAMDATIEIIRGVLNEKHINVTEV 190

Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRD 158
            ID    P     +   +          K DS+   ++AAS++AKVTRD
Sbjct: 191 YIDTIGNPATYQAKLQRLFPTLSITVAKKADSLYPCVSAASVVAKVTRD 239


>gi|183231893|ref|XP_001913636.1| ribonuclease H2 subunit A [Entamoeba histolytica HM-1:IMSS]
 gi|169802278|gb|EDS89588.1| ribonuclease H2 subunit A, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 354

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 67/187 (35%), Gaps = 32/187 (17%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAIISIS 84
            GIDE GRG + GP+V +A       +    G +DSK +S   RE+L+  I  S +   S
Sbjct: 17  IGIDEAGRGPVLGPMVYSAFFTTNTEVISTMGFHDSKILSRTMREKLFTDIKESGVCGFS 76

Query: 85  --SASHQYIDKHNI-----------HKATLDAIYHAVENLQVIPRSALID---------- 121
               +  YI +                A  D I+  +   Q        D          
Sbjct: 77  TRILTPSYISQMMCGPQKVSLNEIAFSAVRDIIHQIIRTSQRKIVHIYCDTVGPSKKYQA 136

Query: 122 --GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS---H 176
                  E    Q     K D +   ++AASI AKVTRD  +      Y +    +    
Sbjct: 137 MIANEFKEVKLSQITVCPKADGLYPVVSAASICAKVTRDTCLDNW--IYEETNIQTRQVG 194

Query: 177 VGYPTAK 183
            GYP+  
Sbjct: 195 CGYPSDV 201


>gi|156063040|ref|XP_001597442.1| hypothetical protein SS1G_01636 [Sclerotinia sclerotiorum 1980]
 gi|154696972|gb|EDN96710.1| hypothetical protein SS1G_01636 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 361

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 81/230 (35%), Gaps = 50/230 (21%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGIN------DSKKISHKKREELYEKIT----- 76
           GIDE GRG + GP+V     L        +       DSK ++   R EL +K+      
Sbjct: 70  GIDEAGRGPVLGPMVYGLFYLPLPLSDPLLRNTHHFDDSKVLTPTVRSELMKKLCTPDSD 129

Query: 77  --SSAIISISSASHQYIDKHNIHKATLDAIYHA----------VENLQVIPRSALIDG-- 122
             +    ++   S + I  + +  AT +    A          V +  V  +   ID   
Sbjct: 130 LYTQCGWAVDVLSARDIGANMMKPATYNLNAQAMDSTIALIQGVMDKGVNVKEIYIDALG 189

Query: 123 ------RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
                 + +    P     V  K DS+   ++AAS+ AKVTRD  +   ++ Y     D 
Sbjct: 190 NTVTYQKKLERIFPTAQITVAKKADSLYPCVSAASVCAKVTRDAALETLYESYVSKDGDQ 249

Query: 176 ------------HVGYPTAKHQQVIKEKGPSCIH------RLTFRPLRNL 207
                         GYP+        ++    I       R ++   +++
Sbjct: 250 EMGGTEVAEDSWGSGYPSDARATAWLKRNMDPIFGWGSECRFSWGTTKDM 299


>gi|154288434|ref|XP_001545012.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150408653|gb|EDN04194.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 341

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 58/237 (24%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKREELYEK---- 74
            V G+DE GRG + GP+V +A  L            +  +DSK ++ + R  L  +    
Sbjct: 56  CVLGVDEAGRGPVLGPMVYSAFYLPLPLHHSLLAEEYHFDDSKVLTPEVRSSLMRQLSTP 115

Query: 75  ---ITSSAIISISSASHQYIDKHNIHKATLDAIYHA-------------VENLQVIPRSA 118
              ++SS    +   S + I    +   T +   +A             V+   +  +  
Sbjct: 116 GNSLSSSCGWGVKVMSARDIAAGMLRPGTRNYNLNAQAMDATTELIRCIVQERGINVKEV 175

Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRD--------RLM 161
            ID    PE    +   +          K DS+  S++AAS+ AKVTRD         +M
Sbjct: 176 YIDTIGNPEAYQRKLEQIFPSLKITVAKKADSLYPSVSAASVCAKVTRDVALEICYRSMM 235

Query: 162 RIAHKKYP---DYGFDSHVGYPTAKH--------QQVIKEKGPSCIHRLTFRPLRNL 207
           +  +   P     G+    GYP+              +   G  C  R ++   R L
Sbjct: 236 KHCNAMEPERSGEGW--GSGYPSDSKCVGWLKNDMDKLFGWGLEC--RFSWGTAREL 288


>gi|190344386|gb|EDK36053.2| hypothetical protein PGUG_00151 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 343

 Score =  100 bits (251), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 81/231 (35%), Gaps = 42/231 (18%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELY 72
           +  K    V G+DE GRG + GP+V        +        +G  DSK +   KR EL+
Sbjct: 65  LENKTASVVLGVDEAGRGPVLGPMVYGISYCLESYQEDLKHKYGFADSKVLKEDKRRELF 124

Query: 73  -------EKITSSAIISISSASHQYIDKHNI--------------HKATLDAIYHAVENL 111
                   ++  +   +  + + + I    +                 T   +   V + 
Sbjct: 125 YMVESMDHELNENVGWATRTMTARDISSAMLQGRGAAGGANLNEQAHNTTIQLIREVLDS 184

Query: 112 QVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMR 162
            V  +   +D    P     +   +          K DSI   ++ AS++AKVTRD  + 
Sbjct: 185 GVNVKKVFVDTVGPPATYQKKLQGIFPTLEITVTKKADSIFPIVSTASVVAKVTRDLNIH 244

Query: 163 IAHKKYPDY-GFDSHVGYPTA------KHQQVIKEKGPSCIHRLTFRPLRN 206
             H +     G     GYP+        H  V    G   + R +++  ++
Sbjct: 245 YYHDQLALLQGKVIGSGYPSDPNTSTWLHANVDPVFGWCPLVRFSWQTAKD 295


>gi|170590300|ref|XP_001899910.1| ribonuclease HI large subunit [Brugia malayi]
 gi|158592542|gb|EDP31140.1| ribonuclease HI large subunit, putative [Brugia malayi]
          Length = 282

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 30/172 (17%)

Query: 27  AGIDEVGRGALAGPVVV-AAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI-- 80
            GIDE GRG + GP+V   A+ L  N       G++DSK ++  KREE++E++  S +  
Sbjct: 32  IGIDEAGRGPVLGPMVYTCAVTLVNNENMLTKIGVDDSKVLTEAKREEIFERMKGSNMSE 91

Query: 81  ---ISISSASHQYIDKHNI-----------HKATLDAIYHAVE-NLQVIPRSALIDGRSI 125
               +  S S Q I    +           H   ++ +  AV+ N+ V+       G   
Sbjct: 92  IFGYACRSVSAQMISAAMLGRTKYSLNKLSHDCAIELLKLAVDNNINVVDVYVDTVGPKD 151

Query: 126 P------EDLP-CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170
           P      +  P  Q     K D+    ++AAS+IAKV RDR +R     +P+
Sbjct: 152 PYQAMLHKKFPDMQIIVSEKADAKFPIVSAASVIAKVKRDRALRNW--TFPE 201


>gi|310794509|gb|EFQ29970.1| ribonuclease HII [Glomerella graminicola M1.001]
          Length = 344

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 89/230 (38%), Gaps = 49/230 (21%)

Query: 25  PVA-GIDEVGRGALAGPVVVAAIILD-PNNIPF-----GINDSKKISHKKREELYEKIT- 76
           PV  G+DE GRG + GP+V     L  P + P        +DSK ++   R +L   +  
Sbjct: 66  PVCLGVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRETHHFDDSKVLTPAVRSQLMAALCT 125

Query: 77  ------SSAIISISSASHQYID--------KHNIHKATLDAIYHAVENL---QVIPRSAL 119
                  S   +IS+ S + I          +N++   +DA    ++ +    V  +   
Sbjct: 126 AGSDLAESCGFAISALSARDISSGMMRPGANYNLNAQAMDATVELIKGVFAQGVNIQEIY 185

Query: 120 IDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMR-IAHKKYP 169
           +D    P     +              K DS+   ++AAS+ AKVTRD  +  +   + P
Sbjct: 186 VDTVGQPAAYQAKLQRFFPATKITVAKKADSLYPCVSAASVCAKVTRDAALEVLYKARAP 245

Query: 170 ----DYGFDSHVGYPT--------AKHQQVIKEKGPSCIHRLTFRPLRNL 207
               + G     GYP+          +   +   GP C  R ++   +++
Sbjct: 246 ESVVEEGMAWGSGYPSDGRCVSWMKSNMHPVFGWGPEC--RFSWGTAKDM 293


>gi|146421659|ref|XP_001486774.1| hypothetical protein PGUG_00151 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 343

 Score = 99.8 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 81/231 (35%), Gaps = 42/231 (18%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELY 72
           +  K    V G+DE GRG + GP+V        +        +G  DSK +   KR EL+
Sbjct: 65  LENKTASVVLGVDEAGRGPVLGPMVYGISYCLESYQEDLKHKYGFADSKVLKEDKRRELF 124

Query: 73  -------EKITSSAIISISSASHQYIDKHNI--------------HKATLDAIYHAVENL 111
                   ++  +   +  + + + I    +                 T   +   V +L
Sbjct: 125 YMVELMDHELNENVGWATRTMTARDISSAMLQGRGAAGGANLNEQAHNTTIQLIREVLDL 184

Query: 112 QVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMR 162
            V  +   +D    P     +   +          K DSI   ++ AS++AKVTRD  + 
Sbjct: 185 GVNVKKVFVDTVGPPATYQKKLQGIFPTLEITVTKKADSIFPIVSTASVVAKVTRDLNIH 244

Query: 163 IAHKKYPDY-GFDSHVGYPTA------KHQQVIKEKGPSCIHRLTFRPLRN 206
             H +     G     GYP+        H  V    G   + R  ++  ++
Sbjct: 245 YYHDQLALLQGKVIGSGYPSDPNTSTWLHANVDPVFGWCPLVRFLWQTAKD 295


>gi|68469222|ref|XP_721398.1| likely Ribonuclease HII [Candida albicans SC5314]
 gi|68470247|ref|XP_720885.1| likely Ribonuclease HII [Candida albicans SC5314]
 gi|77022682|ref|XP_888785.1| hypothetical protein CaO19_6562 [Candida albicans SC5314]
 gi|46442777|gb|EAL02064.1| likely Ribonuclease HII [Candida albicans SC5314]
 gi|46443315|gb|EAL02598.1| likely Ribonuclease HII [Candida albicans SC5314]
 gi|76573598|dbj|BAE44682.1| hypothetical protein [Candida albicans]
          Length = 431

 Score = 99.8 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 79/204 (38%), Gaps = 38/204 (18%)

Query: 16  AMVREKNMWPVAGIDEVGRGALAGPVVVA-AIILD----PNNIPFGINDSKKISHKKREE 70
           ++++ K    V G+DE GRG + GP+V   A  L+         +G  DSK ++  KREE
Sbjct: 145 SILQNKTEPIVLGVDEAGRGPVLGPMVYGIAYSLESFSSKLQKEYGFADSKVLTDVKREE 204

Query: 71  LYEKITS-----SAIISISSASHQYID-----------------KHNIHKATLDAIYHAV 108
           L+++I          I  ++ +    D                     H  T++ I   V
Sbjct: 205 LFKQIEDPDHELHKHIGWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTINLIKQ-V 263

Query: 109 ENLQVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDR 159
               V      +D    P     +              K DSI   ++ AS++AKVTRD 
Sbjct: 264 LAKGVKISKIFVDTVGPPVTYQAKLKRFFPEIDVTVTKKADSIYPIVSTASVVAKVTRDT 323

Query: 160 LMRIAHKKYPDY-GFDSHVGYPTA 182
            ++  ++  P   G     GYP+ 
Sbjct: 324 NIKFYNENLPLLQGQKLGSGYPSD 347


>gi|269977901|ref|ZP_06184855.1| ribonuclease HII [Mobiluncus mulieris 28-1]
 gi|269933867|gb|EEZ90447.1| ribonuclease HII [Mobiluncus mulieris 28-1]
          Length = 278

 Score = 99.8 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           +   ++K D  + ++A A+++AKV RD  M       P YG+  +VGY T  H++ I   
Sbjct: 208 KVQTLVKADQHAATVAGAAVLAKVYRDAFMSRLED--PGYGWSHNVGYGTKAHREAISRL 265

Query: 192 GPSCIHRLTFR 202
           GPS  HR T++
Sbjct: 266 GPSRWHRHTWK 276



 Score = 91.3 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 8/107 (7%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI 80
            V G+DEVGRGALAGPV +   ++    +    P G+NDSK ++ ++RE L + I S   
Sbjct: 36  LVGGMDEVGRGALAGPVCIGVTVVSATELAAGFPPGLNDSKALTARRREALVQPIQSWVK 95

Query: 81  -ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGR 123
             +I  A++  ID+  I  A   A + A+  L     +P+  L+DG 
Sbjct: 96  DFAIGEATNMEIDEMGIMAAMRLAGWRALNQLDARGHLPQKLLLDGN 142


>gi|242807713|ref|XP_002485012.1| ribonuclease HI large subunit [Talaromyces stipitatus ATCC 10500]
 gi|218715637|gb|EED15059.1| ribonuclease HI large subunit [Talaromyces stipitatus ATCC 10500]
          Length = 386

 Score = 99.8 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 87/255 (34%), Gaps = 76/255 (29%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELYEKIT-- 76
            V G+DE GRG + GP+V +A  L  +     +      +DSK ++   R +L + I   
Sbjct: 85  CVLGVDEAGRGPVLGPMVYSAFYLPKDLEQSLLTQEHSFDDSKVLTPVVRAQLMQSICTP 144

Query: 77  -----SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRSA 118
                 S   ++   S + I    +               AT++ I   + +  +     
Sbjct: 145 GQSLHDSCGWAVKLLSARDISAGMMRPGMGIYNLNAQAMDATVEIIRGVLNDKHINVTEI 204

Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRD----------- 158
            ID    P     +   +          K DS+   ++AAS++AKVTRD           
Sbjct: 205 YIDTIGNPATYQAKLQRLFPTLSITVAKKADSLYPCVSAASVVAKVTRDVALESCYRAFY 264

Query: 159 ------------RLMRIAHKKYP------DYGFDSHVGYPTAKH-QQVIKE-------KG 192
                        +M  +    P      + G+    GYP+       +++        G
Sbjct: 265 QEPSQKTVDGDTNMMESSETIPPSVSKVEELGW--GSGYPSDSKCVNWLRQNMDSVFGWG 322

Query: 193 PSCIHRLTFRPLRNL 207
             C  R ++   + +
Sbjct: 323 NEC--RFSWGTAKEM 335


>gi|238883322|gb|EEQ46960.1| ribonuclease HI large subunit [Candida albicans WO-1]
          Length = 427

 Score = 99.4 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/202 (24%), Positives = 77/202 (38%), Gaps = 38/202 (18%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPVVVA-AIILD----PNNIPFGINDSKKISHKKREELY 72
           ++ K    V G+DE GRG + GP+V   A  L+         +G  DSK ++  KREEL+
Sbjct: 144 LQNKTEPIVLGVDEAGRGPVLGPMVYGIAYSLESFSSKLQKEYGFADSKVLTDVKREELF 203

Query: 73  EKITS-----SAIISISSASHQYID-----------------KHNIHKATLDAIYHAVEN 110
           ++I          I  ++ +    D                     H  T++ I   V  
Sbjct: 204 KQIEDPDHELHKHIGWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTINLIKQ-VLA 262

Query: 111 LQVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLM 161
             V      +D    P     +              K DSI   ++ AS++AKVTRD  +
Sbjct: 263 KGVKISKIFVDTVGPPVTYQAKLKRFFPEIDVTVTKKADSIYPIVSTASVVAKVTRDTNI 322

Query: 162 RIAHKKYPDY-GFDSHVGYPTA 182
           +  ++  P   G     GYP+ 
Sbjct: 323 KFYNENLPLLQGQKLGSGYPSD 344


>gi|315427583|dbj|BAJ49182.1| ribonuclease HII [Candidatus Caldiarchaeum subterraneum]
          Length = 212

 Score = 99.4 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 29/207 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81
           + G+DE GRG + GP+VVAA+  + + +P     G+ DSK +S ++REE++EK+ +S  +
Sbjct: 2   LCGVDEAGRGCVVGPLVVAAVAAERDELPLLRALGVADSKTLSPRRREEIFEKLRASFRV 61

Query: 82  SISSASHQYID---KHNIHKATLDAIYHAVENL--QVIPRSALIDGRSI----------- 125
                S + I    + N      D  Y  +  L     PR   +D               
Sbjct: 62  GYMLVSPRRISSCLRVNGGDGLNDLEYGVMAELARSFRPRILFVDSPDRDVRRARRRLLE 121

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKH 184
              +      +++GD   + +AAAS++AKV RDR + +  ++  D+G     GYP+  K 
Sbjct: 122 KLGVEMDVRCMVRGDRRHVLVAAASVVAKVVRDRKVAMLRRRLGDFG----SGYPSDPKT 177

Query: 185 QQVIKE-KG---PSCIHRLTFRPLRNL 207
           ++ + E  G        R+ +  L NL
Sbjct: 178 RKWLLENLGQAAIKPYIRVGWATLENL 204


>gi|239613574|gb|EEQ90561.1| ribonuclease HI large subunit [Ajellomyces dermatitidis ER-3]
 gi|327352659|gb|EGE81516.1| ribonuclease [Ajellomyces dermatitidis ATCC 18188]
          Length = 343

 Score = 99.4 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 80/240 (33%), Gaps = 64/240 (26%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKREELYEKITS- 77
            V G+DE GRG + GP+V +A  L  +            +DSK ++   R  L   + S 
Sbjct: 57  CVLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTPAVRSNLMHLLCSP 116

Query: 78  ------SAIISISSASHQYIDKHNIHKATLDAIYHA-------------VENLQVIPRSA 118
                 S    +   S + I    +   T +   +A             VE   V  R  
Sbjct: 117 DNSLSTSCGWGVKVMSARDISAGMLRPRTRNYNLNAQAMDATTELIRCIVEEKGVNVREV 176

Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
            ID    PE    +   V          K DS+  S++AASI AKVTRD         Y 
Sbjct: 177 YIDTIGNPETYQRKLERVFPSLKITVAKKADSLYPSVSAASICAKVTRD---VALEICYE 233

Query: 170 DY--------------GFDSHVGYPTAKH-QQVIKE-------KGPSCIHRLTFRPLRNL 207
                           G+    GYP+       +K         G  C  R ++   R L
Sbjct: 234 ALLKQRDTVKQDSTTEGW--GSGYPSDSKCVSWLKNDMDTLFGWGYEC--RFSWGTAREL 289


>gi|261192900|ref|XP_002622856.1| ribonuclease HI large subunit [Ajellomyces dermatitidis SLH14081]
 gi|239588991|gb|EEQ71634.1| ribonuclease HI large subunit [Ajellomyces dermatitidis SLH14081]
          Length = 343

 Score = 99.4 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 80/240 (33%), Gaps = 64/240 (26%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKREELYEKITS- 77
            V G+DE GRG + GP+V +A  L  +            +DSK ++   R  L   + S 
Sbjct: 57  CVLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTPAVRSNLMHLLCSP 116

Query: 78  ------SAIISISSASHQYIDKHNIHKATLDAIYHA-------------VENLQVIPRSA 118
                 S    +   S + I    +   T +   +A             VE   V  R  
Sbjct: 117 DNSLSTSCGWGVKVMSARDISAGMLRPRTRNYNLNAQAMDATTELIRCIVEEKGVNVREV 176

Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
            ID    PE    +   V          K DS+  S++AASI AKVTRD         Y 
Sbjct: 177 YIDTIGNPETYQRKLERVFPSLKITVAKKADSLYPSVSAASICAKVTRD---VALEICYE 233

Query: 170 DY--------------GFDSHVGYPTAKH-QQVIKE-------KGPSCIHRLTFRPLRNL 207
                           G+    GYP+       +K         G  C  R ++   R L
Sbjct: 234 ALLKQRDTVKQDSATEGW--GSGYPSDSKCVSWLKNDMDTLFGWGYEC--RFSWGTAREL 289


>gi|225555530|gb|EEH03822.1| ribonuclease HI large subunit [Ajellomyces capsulatus G186AR]
          Length = 341

 Score = 99.4 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 84/237 (35%), Gaps = 58/237 (24%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKREELYEK---- 74
            V G+DE GRG + GP+V +A  L            +  +DSK ++   R  L  +    
Sbjct: 56  CVLGVDEAGRGPVLGPMVYSAFYLPLPLHHSLLAEEYHFDDSKVLTPAVRSSLMRQLSTP 115

Query: 75  ---ITSSAIISISSASHQYIDKHNIHKATLDAIYHA-------------VENLQVIPRSA 118
              ++SS    +   S + I    +   T +   +A             V+   +  +  
Sbjct: 116 DNSLSSSCGWGVKVMSARDIAAGMLRPGTRNYNLNAQAMDATTELIRCIVQERGINVKEV 175

Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRD--------RLM 161
            ID    PE    +   +          K DS+  S++AAS+ AKVTRD         +M
Sbjct: 176 YIDTIGNPEAYQRKLEQIFPSLKITVAKKADSLYPSVSAASVCAKVTRDVALEICYRSMM 235

Query: 162 RIAHKKYP---DYGFDSHVGYPTAKH--------QQVIKEKGPSCIHRLTFRPLRNL 207
              +   P     G+    GYP+              +   G  C  R ++   R L
Sbjct: 236 EHCNAMEPESSGEGW--GSGYPSDSKCVGWLKNDMDKLFGWGHEC--RFSWGTAREL 288


>gi|46107902|ref|XP_381010.1| hypothetical protein FG00834.1 [Gibberella zeae PH-1]
          Length = 338

 Score = 99.4 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 80/226 (35%), Gaps = 48/226 (21%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELYEKIT----- 76
           G+DE GRG + GP+V     L  +            +DSK +    R +L   +      
Sbjct: 63  GVDEAGRGPVLGPMVYGVFFLPISLSDSLLRETHHFDDSKVLKPAVRSDLMRILCTPGSD 122

Query: 77  --SSAIISISSASHQYI--DKHNIHKATLDAI--------YHAVENLQVIPRSALIDGRS 124
              S   + +S S + I  + +  +   L+A           AV    V  +   +D   
Sbjct: 123 LYESCGWATASLSARDIGANMYRPNAYNLNAQAMDATVDLIKAVYAAGVNVQEIFVDTIG 182

Query: 125 IPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIA------HKKYP 169
            P     +   +          K DS+   ++AAS+ AKVTRD  + +        ++  
Sbjct: 183 QPAAYQAKLQRIFPTVKIIVAKKADSLYPCVSAASVCAKVTRDAALEVLFEARADGEEKG 242

Query: 170 DYGFDSHVGYPT--------AKHQQVIKEKGPSCIHRLTFRPLRNL 207
                   GYP+          +   +   GP C  R ++   +++
Sbjct: 243 GEAMAWGSGYPSDGNCVSWMKNNMHPVFGWGPEC--RFSWGTAKDM 286


>gi|225684872|gb|EEH23156.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb03]
          Length = 343

 Score = 99.4 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 83/237 (35%), Gaps = 58/237 (24%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKREELYEKIT-- 76
            V G+DE GRG + GP+V +A  L  +            +DSK ++   R  L   +   
Sbjct: 57  CVLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTPAVRTNLMRLLCTP 116

Query: 77  -----SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRSA 118
                +S    +   S + I    +               AT++ I   VE + V  +  
Sbjct: 117 DHSLNTSCGWGVKVMSARDISTGMLRSGTGNYNLNAQAMDATIELIICIVEKMGVNVKEV 176

Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMR------- 162
            ID    PE    +   +          K DS+  S++AAS+ AKVTRD  +        
Sbjct: 177 YIDTVGNPETYQKKLKRIFPALKITVTKKADSLYPSVSAASVCAKVTRDVALELCYEALV 236

Query: 163 ----IAHKKYPDYGFDSHVGYPTAKH--------QQVIKEKGPSCIHRLTFRPLRNL 207
                  ++    G+    GYP+              +   G  C  R ++   R L
Sbjct: 237 KQRGAMEQEGAADGW--GSGYPSDSKCVGWLKNDMDSLFGWGNEC--RFSWGTAREL 289


>gi|226287752|gb|EEH43265.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb18]
          Length = 343

 Score = 99.4 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 83/237 (35%), Gaps = 58/237 (24%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKREELYEKIT-- 76
            V G+DE GRG + GP+V +A  L  +            +DSK ++   R  L   +   
Sbjct: 57  CVLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTPAVRTNLMRLLCTP 116

Query: 77  -----SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRSA 118
                +S    +   S + I    +               AT++ I   VE + V  +  
Sbjct: 117 DHSLNTSCGWGVKVMSARDISTGMLRSGTGNYNLNAQAMDATIELIICIVEKMGVNVKEV 176

Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMR------- 162
            ID    PE    +   +          K DS+  S++AAS+ AKVTRD  +        
Sbjct: 177 YIDTVGNPETYQKKLKRIFPALKITVTKKADSLYPSVSAASVCAKVTRDVALELCYEALV 236

Query: 163 ----IAHKKYPDYGFDSHVGYPTAKH--------QQVIKEKGPSCIHRLTFRPLRNL 207
                  ++    G+    GYP+              +   G  C  R ++   R L
Sbjct: 237 KQRGAMEQEGAADGW--GSGYPSDSKCVGWLKNDMDSLFGWGNEC--RFSWGTAREL 289


>gi|240273728|gb|EER37247.1| ribonuclease HI large subunit [Ajellomyces capsulatus H143]
 gi|325094841|gb|EGC48151.1| ribonuclease HI large subunit [Ajellomyces capsulatus H88]
          Length = 341

 Score = 99.0 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 84/237 (35%), Gaps = 58/237 (24%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKREELYEK---- 74
            V G+DE GRG + GP+V +A  L            +  +DSK ++   R  L  +    
Sbjct: 56  CVLGVDEAGRGPVLGPMVYSAFYLPLPLHHSLLAEEYHFDDSKVLTPAVRSSLMRQLSTP 115

Query: 75  ---ITSSAIISISSASHQYIDKHNIHKATLDAIYHA-------------VENLQVIPRSA 118
              ++SS    +   S + I    +   T +   +A             V+   +  +  
Sbjct: 116 DNSLSSSCGWGVKVMSARDIAAGMLQPGTRNYNLNAQAMDATTELIRCIVQERGINVKEV 175

Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRD--------RLM 161
            ID    PE    +   +          K DS+  S++AAS+ AKVTRD         +M
Sbjct: 176 YIDTIGNPEAYQRKLEQIFPSLQITVAKKADSLYPSVSAASVCAKVTRDVALEICYRSMM 235

Query: 162 RIAHKKYP---DYGFDSHVGYPTAKH--------QQVIKEKGPSCIHRLTFRPLRNL 207
              +   P     G+    GYP+              +   G  C  R ++   R L
Sbjct: 236 EHCNAMEPESSGEGW--GSGYPSDSKCVGWLKNDMDKLFGWGHEC--RFSWGTAREL 288


>gi|303322466|ref|XP_003071226.1| ribonuclease H2 subunit A, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240110925|gb|EER29081.1| ribonuclease H2 subunit A, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|320040565|gb|EFW22498.1| ribonuclease HI large subunit [Coccidioides posadasii str.
           Silveira]
          Length = 353

 Score = 99.0 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 83/240 (34%), Gaps = 63/240 (26%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELYEKIT-- 76
            V G+DE GRG + GP+V +A  L        +      NDSK ++   R  L   +   
Sbjct: 69  CVLGVDEAGRGPVLGPMVYSAFYLPMPLHHSLLAEEHQFNDSKVLTPGIRSNLMRLLCTP 128

Query: 77  -----SSAIISISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRSA 118
                 S   +I   S + I                    AT++ I   VE   V  +  
Sbjct: 129 DHPLHESCGWAIKLLSARDISSGMQRPGAAVYNLNAQAMDATVEIIRGVVEERGVDVKEV 188

Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLM----RIAH 165
            ID    P+    +   +          K D++   ++AAS+ AKVTRD  +        
Sbjct: 189 YIDTIGNPQTYQKKLERIFPSLKITVAKKADALFPCVSAASVCAKVTRDAALEICYEELQ 248

Query: 166 KKYPDY--------GFDSHVGYPTAKH-QQVIKEKGPSCIH---------RLTFRPLRNL 207
           K+            G+    GYP+       +K+     +H         R ++   ++L
Sbjct: 249 KQRAGMVEMEHMNDGW--GSGYPSDSKCVTWLKK----EMHPLFGWGNECRFSWGTAKDL 302


>gi|312379086|gb|EFR25480.1| hypothetical protein AND_09149 [Anopheles darlingi]
          Length = 346

 Score = 98.6 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 88/233 (37%), Gaps = 57/233 (24%)

Query: 28  GIDEVGRGALAG---------------------PVVVAAIILDPNNIP----FGINDSKK 62
           G+DE GRG + G                     P+V        +        G  DSK+
Sbjct: 51  GVDEAGRGPVLGKRDPEPYSERKMKLFCNPMLGPMVYGIAFCPLSKKDILKSLGFADSKQ 110

Query: 63  ISHKKREELYEKITSS-----AI-ISISSASHQYIDKHNIH--KATLDAI--------YH 106
           ++ +KR+++++++        A+  ++ + S   I    +   K +L+ +         H
Sbjct: 111 LTEEKRDQIFDEMNQKDYATEALGWAVEAISPNTISMSMLRRTKCSLNEVSMNSAIGLIH 170

Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTR 157
           A     V      +D    PE    +   +          K DS    ++AASI AKVTR
Sbjct: 171 AAIEAGVNIAEVYVDTVGPPEKYQAKLKDIFPKFKITVAKKADSTYPIVSAASIAAKVTR 230

Query: 158 DRLMRIAH-KKYPDYGFDS-HVGYP----TAKHQ-QVIKEKGPSCIHRLTFRP 203
           D  +++   ++ P+   +S   GYP    T K   +V    G   + R ++  
Sbjct: 231 DHALKVWQFRERPNEEENSFGSGYPGDPTTKKFLGEVDLVFGFPRLVRFSWST 283


>gi|154345524|ref|XP_001568699.1| ribonuclease H [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 318

 Score = 98.2 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 51/225 (22%)

Query: 24  WPVAGIDEVGRGALAGPVVV-AAII-LDPNNIPF---GINDSKKISHKKREELYEKITS- 77
           + + GIDE GRG + GP+V   A+I L  ++       + DSK +  + R    +++   
Sbjct: 44  YLILGIDEAGRGPVIGPMVYTGAVISLGEHDDLVRLCHVADSKILDERHRLASLQQLRQL 103

Query: 78  ------SAIISISSASHQYIDKHNIHKATL------DAIYHAVENLQVIPRSALIDGRSI 125
                 +  +S    S     +   +  TL        I  A         +A +D    
Sbjct: 104 KTFRSFTVCVSPEEISSTMTGRSGRNLNTLSHETAVHIISEATLASAGKLCAAYVDTVGP 163

Query: 126 PEDLPC---------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
           P+             +     K DS    ++AASI+AK TRD  ++   +       +  
Sbjct: 164 PDTYQARLAGRFPHLRVTVAKKADSKFPIVSAASIVAKTTRDTAIQELGE-------NIG 216

Query: 177 VGYPTAKH-QQVIKEKGPSCIH------------RLTFRPLRNLS 208
            GYP+       ++      +H            R ++ P+  L+
Sbjct: 217 SGYPSDPRAIAWLRSH----VHRFFVFRHVYGYVRHSWGPVVQLA 257


>gi|322505755|emb|CAM43828.2| putative ribonuclease H [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 318

 Score = 98.2 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 51/225 (22%)

Query: 24  WPVAGIDEVGRGALAGPVVV-AAII-LDPNNIPF---GINDSKKISHKKREELYEKITS- 77
           + + GIDE GRG + GP+V   A+I L  ++       + DSK +  + R    +++   
Sbjct: 44  YLILGIDEAGRGPVIGPMVYTGAVISLGEHDDLVRLCHVADSKILDERHRLASLQQLRQL 103

Query: 78  ------SAIISISSASHQYIDKHNIHKATL------DAIYHAVENLQVIPRSALIDGRSI 125
                 +  +S    S     +   +  TL        I  A         +A +D    
Sbjct: 104 KTFRSFTVCVSPEEISSTMTGRSGRNLNTLSHETAVHIISEATLASAGKLCAAYVDTVGP 163

Query: 126 PEDLPC---------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
           P+             +     K DS    ++AASI+AK TRD  ++   +       +  
Sbjct: 164 PDTYQARLAGRFPHLRVTVAKKADSKFPIVSAASIVAKTTRDTAIQELGE-------NIG 216

Query: 177 VGYPTAKH-QQVIKEKGPSCIH------------RLTFRPLRNLS 208
            GYP+       ++      +H            R ++ P+  L+
Sbjct: 217 SGYPSDPRAIAWLRSH----VHRFFVFRHVYGYVRHSWGPVVQLA 257


>gi|169596915|ref|XP_001791881.1| hypothetical protein SNOG_01231 [Phaeosphaeria nodorum SN15]
 gi|111069760|gb|EAT90880.1| hypothetical protein SNOG_01231 [Phaeosphaeria nodorum SN15]
          Length = 345

 Score = 98.2 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 79/234 (33%), Gaps = 51/234 (21%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELYEKIT-- 76
            V G+DE GRG + GP+V A   L        +      +DSKK++ + R +L  +I   
Sbjct: 59  VVLGVDEAGRGPVLGPMVYALFYLPVELHHSLLADTHHFDDSKKLTPEVRSDLMRRICTP 118

Query: 77  -----SSAIISISSASHQYIDKHNIHKATLDAIYHA----------VENLQVIPRSALID 121
                 +   +  S S Q I  H +     +    A          V    V      ID
Sbjct: 119 GTDLYEAGGWATRSLSAQDISAHMLSPNVYNLNAQAMDATIDLIKEVLAKGVNVTEIYID 178

Query: 122 GRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY---- 168
               PE    +   +          K DS+   ++AAS+ AKVTRD  + + +  Y    
Sbjct: 179 TIGRPETYQRKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRDAAINVCYAPYHSRA 238

Query: 169 ---------PDYGFDSHVGYPTAKHQQVIKEKGPSCIH------RLTFRPLRNL 207
                             GYP+        ++    +       R ++   + L
Sbjct: 239 LEAGTAAENAKVNVAWGSGYPSDSKTSTWLKQNMDPLFGWGNECRFSWGTAKEL 292


>gi|119196321|ref|XP_001248764.1| hypothetical protein CIMG_02535 [Coccidioides immitis RS]
          Length = 353

 Score = 98.2 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 83/240 (34%), Gaps = 63/240 (26%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELYEKIT-- 76
            V G+DE GRG + GP+V +A  L        +      NDSK ++   R  L   +   
Sbjct: 69  CVLGVDEAGRGPVLGPMVYSAFYLPMPLHHSLLAEEHQFNDSKVLTPGIRSNLMRLLCTP 128

Query: 77  -----SSAIISISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRSA 118
                 S   +I   S + I                    AT++ I   VE   V  +  
Sbjct: 129 DHPLHESCGWAIKLLSARDISSGMQRPGAAVYNLNAQAMDATVEIIRGVVEERGVDVKEV 188

Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLM----RIAH 165
            ID    P+    +   +          K D++   ++AAS+ AKVTRD  +        
Sbjct: 189 YIDTIGNPQTYQKKLERIFPSLKITVAKKADALFPCVSAASVCAKVTRDAALEICYEELQ 248

Query: 166 KKYPDY--------GFDSHVGYPTAKH-QQVIKEKGPSCIH---------RLTFRPLRNL 207
           ++            G+    GYP+       +K+     +H         R ++   ++L
Sbjct: 249 RQRAGMVEMEHMNNGW--GSGYPSDSKCVTWLKK----EMHPLFGWGNECRFSWGTAKDL 302


>gi|67537888|ref|XP_662718.1| hypothetical protein AN5114.2 [Aspergillus nidulans FGSC A4]
 gi|40743105|gb|EAA62295.1| hypothetical protein AN5114.2 [Aspergillus nidulans FGSC A4]
 gi|259484559|tpe|CBF80886.1| TPA: ribonuclease HI large subunit (AFU_orthologue; AFUA_1G07600)
           [Aspergillus nidulans FGSC A4]
          Length = 339

 Score = 97.8 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 35/170 (20%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELYEKIT- 76
           + + GIDE GRG + GP+V +A  L  +      +  +  NDSK ++   R  L   +  
Sbjct: 62  YLILGIDEAGRGPVLGPMVYSAFYLPSSLHHSLLSEEYSFNDSKVLTAGVRANLMRILCT 121

Query: 77  ------SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRS 117
                  S   +    S + I    +               AT++ I   VE  ++  R 
Sbjct: 122 QGSPLHESCGWATKLLSARDISSGMMRPAAGVYNLNAQAMDATIELIRGVVEERKLNVRE 181

Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRD 158
             ID    P     +   V          K DS+   ++AAS++AKVTRD
Sbjct: 182 VYIDTIGNPASYQKKLEMVFPSLRITVAKKADSLYPCVSAASVVAKVTRD 231


>gi|302657829|ref|XP_003020627.1| hypothetical protein TRV_05276 [Trichophyton verrucosum HKI 0517]
 gi|291184480|gb|EFE40009.1| hypothetical protein TRV_05276 [Trichophyton verrucosum HKI 0517]
          Length = 361

 Score = 97.8 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 84/246 (34%), Gaps = 65/246 (26%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELY------ 72
            V GIDE GRG + GP+V +A  L  +            +DSK ++ + R  L       
Sbjct: 67  CVLGIDEAGRGPVLGPMVYSAFYLPIHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLCTQ 126

Query: 73  -EKITSSAIISISSASHQYIDKHNI--------------HKATLDAIYHAVENLQVIPRS 117
              +  S   ++   S + I    +                AT++ I   VE   +  + 
Sbjct: 127 GHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQGIDVKE 186

Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRI----- 163
             +D    PE    +   V          K DS+   ++AAS+ AKVTRD  +       
Sbjct: 187 VYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESW 246

Query: 164 AHKKYPDYGFDS--------------HVGYPT--------AKHQQVIKEKGPSCIHRLTF 201
            +++      ++                GYP+         K    +   G  C  R ++
Sbjct: 247 LNQREKQRTLETGEDEATTADEILTWGSGYPSDGKCVGWLKKDMNRLFGWGVEC--RFSW 304

Query: 202 RPLRNL 207
              + L
Sbjct: 305 GTSKEL 310


>gi|189195170|ref|XP_001933923.1| ribonuclease HI large subunit [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187979802|gb|EDU46428.1| ribonuclease HI large subunit [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 342

 Score = 97.8 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 76/234 (32%), Gaps = 54/234 (23%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELYEKITSS 78
            V G+DE GRG + GP+V A   L        +      +DSK ++ + R  L  K+ + 
Sbjct: 59  VVLGVDEAGRGPVLGPMVYALFYLPIELHHSLLADTHHFDDSKVLTPEVRSNLMRKLCTK 118

Query: 79  AI-------ISISSASHQYIDKHNIHKATLDAIYHA----------VENLQVIPRSALID 121
                     +    S Q I  H +  +  +    A          V    V      ID
Sbjct: 119 GSDLYDAGGWATRLLSAQDISAHMLSPSVYNLNAQAMDATIDLIKGVLAQGVNVTEIYID 178

Query: 122 GRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172
               PE    +   +          K DS+   ++AAS+ AKVTRD         Y  Y 
Sbjct: 179 TIGKPEIYQRKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRD---AALDVCYEPYH 235

Query: 173 -------------FDSHVGYPTAKH-QQVIKE-----KGPSCIHRLTFRPLRNL 207
                             GYP+       +K+      G     R ++   + L
Sbjct: 236 NRNNEAERGTDVKVAWGSGYPSDARTTTWLKQNMDPLFGWGSETRFSWGTAKEL 289


>gi|150864655|ref|XP_001383577.2| hypothetical protein PICST_31007 [Scheffersomyces stipitis CBS
           6054]
 gi|149385911|gb|ABN65548.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 347

 Score = 97.8 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 75/194 (38%), Gaps = 36/194 (18%)

Query: 25  PVAGIDEVGRGALAGPVVVA-AIILDPN----NIPFGINDSKKISHKKREELYEKITSSA 79
            V G+DE GRG + GP+V   A  L+         +G  DSK +  +KR+EL+  I   A
Sbjct: 71  VVLGVDEAGRGPVLGPMVYGIAFALEKYSTRLQKEYGFADSKTLKEEKRDELFYSIEDEA 130

Query: 80  -----------------IISISSA-SHQYIDKHNIHKATLDAIYHAVENL---QVIPRSA 118
                             IS     S   I  +N+++   D     ++ +    V  +  
Sbjct: 131 NELNRNVGWATTTMTARDISSGMLRSVLGIGNYNLNEQAHDTTIQLIKEVIAKGVNVKKI 190

Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIA-HKKY 168
            +D    P     +   +          K DSI   ++ AS++AKVTRD  +R   H   
Sbjct: 191 YVDTVGPPVTYQAKLQKIFPETEVTVAKKADSIYPIVSTASVMAKVTRDANIRWYNHNLD 250

Query: 169 PDYGFDSHVGYPTA 182
              G     GYP+ 
Sbjct: 251 VLKGHKLGSGYPSD 264


>gi|302510819|ref|XP_003017361.1| hypothetical protein ARB_04241 [Arthroderma benhamiae CBS 112371]
 gi|291180932|gb|EFE36716.1| hypothetical protein ARB_04241 [Arthroderma benhamiae CBS 112371]
          Length = 361

 Score = 97.8 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 84/246 (34%), Gaps = 65/246 (26%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREEL------- 71
            V GIDE GRG + GP+V +A  L  +            +DSK ++ + R  L       
Sbjct: 67  CVLGIDEAGRGPVLGPMVYSAFYLPIHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLCTQ 126

Query: 72  YEKITSSAIISISSASHQYIDKHNI--------------HKATLDAIYHAVENLQVIPRS 117
              +  S   ++   S + I    +                AT++ I   VE   +  + 
Sbjct: 127 SHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQGINVKE 186

Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRI----- 163
             +D    PE    +   V          K DS+   ++AAS+ AKVTRD  +       
Sbjct: 187 VYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESW 246

Query: 164 AHKKYPD----YGFDS----------HVGYPT--------AKHQQVIKEKGPSCIHRLTF 201
            +++        G D             GYP+         K    +   G  C  R ++
Sbjct: 247 LNQREKQRTLVTGEDEATTADEILTWGSGYPSDGKCVGWLKKDMNRLFGWGVEC--RFSW 304

Query: 202 RPLRNL 207
              + L
Sbjct: 305 GTSKEL 310


>gi|326472233|gb|EGD96242.1| ribonuclease H2 subunit A [Trichophyton tonsurans CBS 112818]
          Length = 361

 Score = 97.8 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 85/246 (34%), Gaps = 65/246 (26%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELY------ 72
            V GIDE GRG + GP+V +A  L  +            +DSK ++ + R  L       
Sbjct: 67  CVLGIDEAGRGPVLGPMVYSAFYLPIHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLCTK 126

Query: 73  -EKITSSAIISISSASHQYIDKHNI--------------HKATLDAIYHAVENLQVIPRS 117
              +  S   ++   S + I    +                AT++ I   VE  ++  + 
Sbjct: 127 GHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNSQALDATIEIIRGVVETQRIDVKE 186

Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRI----- 163
             +D    PE    +   V          K DS+   ++AAS+ AKVTRD  +       
Sbjct: 187 VYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESW 246

Query: 164 AHKKYPD----YGFDS----------HVGYPT--------AKHQQVIKEKGPSCIHRLTF 201
            +++        G D             GYP+         K    +   G  C  R ++
Sbjct: 247 LNQREKQKTLATGEDKTATAEEILTWGSGYPSDGKCVGWLKKDMNRLFGWGAEC--RFSW 304

Query: 202 RPLRNL 207
              + L
Sbjct: 305 GTSKEL 310


>gi|221481429|gb|EEE19819.1| ribonuclease HI large subunit, putative [Toxoplasma gondii GT1]
 gi|221501972|gb|EEE27722.1| ribonuclease HI large subunit, putative [Toxoplasma gondii VEG]
          Length = 366

 Score = 97.4 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 28/175 (16%)

Query: 18  VREKNMWPV-AGIDEVGRGALAGPVVVAAIIL-----DPNNIPFGINDSKKISHKKREEL 71
             +    PV  GIDE GRG + G +V A                 ++DSKK+   +REE 
Sbjct: 14  FHKCGGKPVRLGIDEAGRGCVLGAMVYACFFCAAEDEKKELKALNVDDSKKLKEWEREEA 73

Query: 72  YEKITSSAI---ISISSASHQYI-------DKHNIHKATLDAIYHAV-----ENLQVIPR 116
           +E I +       SI +   + I        K+++++ + D     +       + V   
Sbjct: 74  FEAIQAKRDLFGWSIHAIRSEEISAKMLRKKKYSLNEISHDTAISLILRTVKSGVNVTEV 133

Query: 117 SALIDGR------SIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIA 164
                G        +    P     V  K DS+   ++AASI+AKVTRDR++   
Sbjct: 134 FVDTVGNANAYQAKLKAHFPSIKIKVAEKADSLFPVVSAASILAKVTRDRMLVRW 188


>gi|237844165|ref|XP_002371380.1| ribonuclease HI large subunit, putative [Toxoplasma gondii ME49]
 gi|211969044|gb|EEB04240.1| ribonuclease HI large subunit, putative [Toxoplasma gondii ME49]
          Length = 366

 Score = 97.4 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 28/175 (16%)

Query: 18  VREKNMWPV-AGIDEVGRGALAGPVVVAAIIL-----DPNNIPFGINDSKKISHKKREEL 71
             +    PV  GIDE GRG + G +V A                 ++DSKK+   +REE 
Sbjct: 14  FHKCGGKPVRLGIDEAGRGCVLGAMVYACFFCAAEDEKKELKALNVDDSKKLKEWEREEA 73

Query: 72  YEKITSSAI---ISISSASHQYI-------DKHNIHKATLDAIYHAV-----ENLQVIPR 116
           +E I +       SI +   + I        K+++++ + D     +       + V   
Sbjct: 74  FEAIQAKRDLFGWSIHAIRSEEISAKMLRKKKYSLNEISHDTAISLILRTVKSGVNVTEV 133

Query: 117 SALIDGR------SIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIA 164
                G        +    P     V  K DS+   ++AASI+AKVTRDR++   
Sbjct: 134 FVDTVGNANAYQAKLKAHFPSIKIKVAEKADSLFPVVSAASILAKVTRDRMLVRW 188


>gi|149004283|ref|ZP_01829060.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS69]
 gi|147757777|gb|EDK64791.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS69]
          Length = 134

 Score = 97.4 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 37/56 (66%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
              E  + ++ +  +AGIDEVGRG LAGPVV AA+IL  N    G+NDSKKI  K+
Sbjct: 58  LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKE 113


>gi|322699282|gb|EFY91045.1| Ribonuclease H2 subunit A [Metarhizium acridum CQMa 102]
          Length = 337

 Score = 97.1 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 79/230 (34%), Gaps = 52/230 (22%)

Query: 28  GIDEVGRGALAGPVVVAAIILD-PNNIPF-----GINDSKKISHKKREELYEKIT----- 76
           G+DE GRG + GP+V     L  P + P        +DSK ++   R  L   +      
Sbjct: 58  GVDEAGRGPVLGPMVYGIFYLPLPQSGPLLRDTHHFDDSKALTAAARSSLMRALCTEGTD 117

Query: 77  --SSAIISISSASHQYIDKHNIHKA---TLDAI--------YHAVENLQVIPRSALIDGR 123
             +    + ++ S + I    +  A    L+A                 +  R   +D  
Sbjct: 118 LHAQCGWATAALSARDISAGMLRPAGVYNLNAQAVDATVALIRGALKRGLNIREVYVDTV 177

Query: 124 SIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIA---------H 165
             P     +   V          K DS+   ++AAS+ AKVTRD  +             
Sbjct: 178 GQPAAHQARLQRVFPTTKITVAKKADSLYPCVSAASVCAKVTRDAALEALYGARRDGDGD 237

Query: 166 KKYPDYGFDSHVGYPTAKH-QQVIKE-------KGPSCIHRLTFRPLRNL 207
            +    G +   GYP+       ++         GP C  R ++   +++
Sbjct: 238 GEGAAAGMEWGSGYPSDARCVGWLRRNMHPVFGWGPEC--RFSWGTAKDM 285


>gi|330925767|ref|XP_003301184.1| hypothetical protein PTT_12627 [Pyrenophora teres f. teres 0-1]
 gi|311324289|gb|EFQ90711.1| hypothetical protein PTT_12627 [Pyrenophora teres f. teres 0-1]
          Length = 332

 Score = 97.1 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 78/233 (33%), Gaps = 53/233 (22%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELYEKITSS 78
            V G+DE GRG + GP+V A   L        +      +DSK ++ + R  L  K+ + 
Sbjct: 50  VVLGVDEAGRGPVLGPMVYALFYLPTELHHSLLADTHHFDDSKVLTPEVRSNLMRKLCTK 109

Query: 79  AI-------ISISSASHQYIDKHNIHKATLDAIYHA----------VENLQVIPRSALID 121
                     +    S Q I  H +  +  +    A          V    V      ID
Sbjct: 110 GSDLYDAGGWATRLLSAQDISAHMLSPSVYNLNAQAMDATIDLIKGVLAQGVNVTEIYID 169

Query: 122 GRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY- 171
               PE    +   +          K DS+   ++AAS+ AKVTRD         Y  Y 
Sbjct: 170 TIGKPEIYQRKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRD---AALDVCYEPYH 226

Query: 172 -------GFDS----HVGYPTAKH-QQVIKE-----KGPSCIHRLTFRPLRNL 207
                  G D       GYP+       +K+      G     R ++   + L
Sbjct: 227 HRNEAERGADVKVVWGSGYPSDARTTTWLKQNMDPLFGWGSETRFSWGTAKEL 279


>gi|315044861|ref|XP_003171806.1| ribonuclease H2 subunit A [Arthroderma gypseum CBS 118893]
 gi|311344149|gb|EFR03352.1| ribonuclease H2 subunit A [Arthroderma gypseum CBS 118893]
          Length = 362

 Score = 96.7 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 68/175 (38%), Gaps = 36/175 (20%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELYEKIT-- 76
            V GIDE GRG + GP+V +A  L  +     +      +DSK ++ + R  L   +   
Sbjct: 67  CVLGIDEAGRGPVLGPMVYSAFYLPIHLHNSLLADEHHFDDSKVLTPEVRSNLMRSLCTQ 126

Query: 77  -----SSAIISISSASHQYIDKHNI--------------HKATLDAIYHAVENLQVIPRS 117
                +S   ++   S + I    +                AT++ I   VE   +  + 
Sbjct: 127 GHSLHNSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQGIDVKE 186

Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRI 163
             +D    PE    +   V          K DS+   ++AAS+ AKVTRD  +  
Sbjct: 187 VYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEA 241


>gi|326483287|gb|EGE07297.1| ribonuclease HI large subunit [Trichophyton equinum CBS 127.97]
          Length = 323

 Score = 96.7 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 85/246 (34%), Gaps = 65/246 (26%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELY------ 72
            V GIDE GRG + GP+V +A  L  +            +DSK ++ + R  L       
Sbjct: 67  CVLGIDEAGRGPVLGPMVYSAFYLPIHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLCTK 126

Query: 73  -EKITSSAIISISSASHQYIDKHNI--------------HKATLDAIYHAVENLQVIPRS 117
              +  S   ++   S + I    +                AT++ I   VE  ++  + 
Sbjct: 127 GHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNSQALDATIEIIRGVVETQRIDVKE 186

Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRI----- 163
             +D    PE    +   V          K DS+   ++AAS+ AKVTRD  +       
Sbjct: 187 VYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESW 246

Query: 164 AHKKYPD----YGFDS----------HVGYPT--------AKHQQVIKEKGPSCIHRLTF 201
            +++        G D             GYP+         K    +   G  C  R ++
Sbjct: 247 LNQREKQKTLATGEDKTATAEEILTWGSGYPSDGKCVGWLKKDMNRLFGWGAEC--RFSW 304

Query: 202 RPLRNL 207
              + L
Sbjct: 305 GTSKEL 310


>gi|9664592|gb|AAF97195.1|AF268611_19 ribonuclease HII [uncultured marine group II euryarchaeote 37F11]
          Length = 250

 Score = 96.7 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 84/223 (37%), Gaps = 39/223 (17%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKIT 76
           ++   + G+DE GRG + GP+VV  + +   +        I DSK +SH KR+  Y+ + 
Sbjct: 2   RDKMRLIGVDEAGRGPVLGPLVVGLLSIPKEDEYMLEEQCIEDSKHLSHAKRKLHYDWLN 61

Query: 77  SSA-----IISISSASHQYID-----------KHNIHKATLDAIYHAV-ENLQVIPRSAL 119
                    +         ID           + ++  + L+  +    + L ++  +  
Sbjct: 62  QQVTERGWYVDTIICKPNRIDNAVYAKGLNILEVDLFASILNRHHRLFTQELDILLDACD 121

Query: 120 ID----GRSIPE---DLPCQAFAVI---KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
           ++       I E   D P     +I   K D+    +  ASI+AKV RD  +        
Sbjct: 122 VNEERFSNRISERLTDWPWLKTTMIAEHKADTNHRIVGGASILAKVVRDMEIERIAV--- 178

Query: 170 DYGFDSHVGYPT-----AKHQQVIKEKGPSCIHRLTFRPLRNL 207
           D G     GYP           +IKE G     R ++  ++  
Sbjct: 179 DVGAPVGSGYPADPNTVKALPYLIKEDGIHEEIRWSWATVKRF 221


>gi|11387103|sp|Q9P5X8|RNH2A_NEUCR RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
           AltName: Full=Ribonuclease HI large subunit; Short=RNase
           HI large subunit; AltName: Full=Ribonuclease HI subunit
           A
 gi|7800995|emb|CAB91392.1| probable 35 kDa ribonuclease H [Neurospora crassa]
          Length = 317

 Score = 96.3 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 83/234 (35%), Gaps = 48/234 (20%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN------DSKKISHKKREE 70
            +   N     G+DE GRG + GP+V +A  L        +       DSK ++   R  
Sbjct: 36  QLLADNTPCCLGVDEAGRGPVLGPMVYSAFYLPLTLSDPLLKQKHSFDDSKVLTPAVRLS 95

Query: 71  LYEKITSS-----------------AIISISSASHQYIDKHNIHKATLDAIYHAVENL-- 111
           L +++ +                    IS           +N+++  +DA    ++ +  
Sbjct: 96  LMKELCTKDTELHDNCGYATSSLSPLSISSGMLKASKAQIYNLNQQAMDATIALIKGIYE 155

Query: 112 -QVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLM 161
             V      ID    P     +   V          K DS+   ++AAS++AKVTRD   
Sbjct: 156 RGVNVTDIFIDTIGQPAAYQKKLERVFPTAKITVAKKADSLYPVVSAASVVAKVTRD--- 212

Query: 162 RIAHKKYPDYGFDSHVGYPTAKH-QQVIKE-------KGPSCIHRLTFRPLRNL 207
                 + D       GYP+       +K+        GP C  R ++   +++
Sbjct: 213 IALEVLWADRTMAWGSGYPSDSKCVSWLKQNMHPVFGWGPEC--RFSWGTAKDM 264


>gi|258569747|ref|XP_002543677.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237903947|gb|EEP78348.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 352

 Score = 96.3 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 83/237 (35%), Gaps = 58/237 (24%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKREELYEK---- 74
            V G+DE GRG + GP+V +A  L  +            NDSK ++   R  L       
Sbjct: 68  CVLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFNDSKVLTPGVRSNLMRLLCTP 127

Query: 75  ---ITSSAIISISSASHQYID-------------KHNIHKATLDAIYHAVENLQVIPRSA 118
              +  S   ++   S + I                    AT++ I   VE   V  +  
Sbjct: 128 GHSLQKSCGWAVKLLSARDISAGMQRPGAGMYNLNAQAMDATVEIIRGVVEERGVDVKEV 187

Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRI----AH 165
            ID    P+    +   +          K DS+   ++AAS+ AKVTRD  + I      
Sbjct: 188 YIDTIGNPQSYQKKLEMIFPSLKITVAKKADSLFPCVSAASVCAKVTRDSALDICYEALQ 247

Query: 166 KKYPDYGFDS-----HVGYPTAKH-QQVIKEKGPSCIH---------RLTFRPLRNL 207
           K+    G +        GYP+       +K+     +H         R ++   + L
Sbjct: 248 KERVGKGMEHMNDGWGSGYPSDSKCTSWLKK----EMHPLFGWGNECRFSWGTAKEL 300


>gi|327297598|ref|XP_003233493.1| ribonuclease HI large subunit [Trichophyton rubrum CBS 118892]
 gi|326464799|gb|EGD90252.1| ribonuclease HI large subunit [Trichophyton rubrum CBS 118892]
          Length = 361

 Score = 96.3 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 66/175 (37%), Gaps = 36/175 (20%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELY------ 72
            V GIDE GRG + GP+V +A  L  +            +DSK ++ + R  L       
Sbjct: 67  CVLGIDEAGRGPVLGPMVYSAFYLPVHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLCTQ 126

Query: 73  -EKITSSAIISISSASHQYIDKHNI--------------HKATLDAIYHAVENLQVIPRS 117
              +  S   ++   S + I    +                AT++ I   VE   +  + 
Sbjct: 127 GHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETHGIDVKE 186

Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRI 163
             +D    PE    +   V          K DS+   ++AAS+ AKVTRD  +  
Sbjct: 187 VYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEA 241


>gi|149235450|ref|XP_001523603.1| ribonuclease HI large subunit [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146452582|gb|EDK46838.1| ribonuclease HI large subunit [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 414

 Score = 95.9 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 83/229 (36%), Gaps = 54/229 (23%)

Query: 28  GIDEVGRGALAGPVVVAAII-----LDPNNIPFGINDSKKISHKKREELYEKITSSAI-- 80
           G+DE GRG + GP+V          L      +G  DSK+++  KRE L++ +  + I  
Sbjct: 137 GVDEAGRGPVLGPMVYGIAYSLLSFLKCLQKQYGFADSKQLTGDKRELLFKMMEDTHIEN 196

Query: 81  -----ISISSASHQYID------------------KHNIHKATLDAIYHAVENLQVIPRS 117
                +  ++ +    D                      H AT++     + +  V   +
Sbjct: 197 GLSKHVGWATTTMTAKDISLGMLRLVSNGKGVYNLNEQAHDATIEL-IRLILSKGVNITA 255

Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
             +D    P     +   +          K DSI   ++ AS++AKVTRD  ++ A++  
Sbjct: 256 IYVDTVGPPATYQAKLKKLFPTIDITVTKKADSIYPIVSTASVVAKVTRDLNLKYANQ-- 313

Query: 169 PDYGFDSH----VGYPTAKHQQVIKEKGPSCIH-------RLTFRPLRN 206
                  +     GYP+  +           I        R +++  ++
Sbjct: 314 -HINLLKNHALGSGYPSDPNTSFWLNHNVDPIFGWCFGFIRFSWQTAKD 361


>gi|145605665|ref|XP_370462.2| hypothetical protein MGG_06959 [Magnaporthe oryzae 70-15]
 gi|145013464|gb|EDJ98105.1| hypothetical protein MGG_06959 [Magnaporthe oryzae 70-15]
          Length = 312

 Score = 95.9 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 82/208 (39%), Gaps = 37/208 (17%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD-PNNIPF-----GINDSKKISHKKREELYEKITSS 78
            V G+DE GRG + GP+V     L  P + P        +DSK ++   R  L E + + 
Sbjct: 56  CVLGVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRETHHFDDSKVLTPAVRSSLMESLCTP 115

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV-I 137
            +   + + +  +D+  ++ A +      V+ +           + +    P     V  
Sbjct: 116 TLSQSAGSLNSVMDR-GVNVAEI-----YVDTVGPPAAY----QKKLERFFPTAKVTVSK 165

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIA------------HKKYPDYGFDSHVGYPTAKHQ 185
           K DS+   ++AAS+ AKVTRD  + +               +  + G+    GYP+    
Sbjct: 166 KADSLYPCVSAASVCAKVTRDAALEVLYKNVLSEIAKAEGGEDEEIGW--GSGYPSDARC 223

Query: 186 QVIKEKGPSCIH------RLTFRPLRNL 207
               ++    +       R ++  ++++
Sbjct: 224 VGWLKRNMHPVFGWGTECRFSWGTVKDM 251


>gi|145479147|ref|XP_001425596.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124392667|emb|CAK58198.1| unnamed protein product [Paramecium tetraurelia]
          Length = 297

 Score = 95.9 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 41/227 (18%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-----INDSKKISHKKREELYEK 74
           ++N     GIDE GRG + GP++ A+                  DSK+I+   R++L++ 
Sbjct: 27  KQNFDWQLGIDEAGRGPVLGPMLYASCYWPTKYHKLISETCKFVDSKQINEAARDKLFDV 86

Query: 75  IT----SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--- 127
           +T              + +Y+ K+ +   T++    +      + +SA+  G  I E   
Sbjct: 87  LTQLKGKVLTFETRELTAEYLSKNQLAHLTINLNDISHNTAAELIQSAIQKGYKITEIFV 146

Query: 128 ------------------DLPCQAFAVI--KGDSISLSIAAASIIAKVTRD-RLMRIAHK 166
                             ++  +A  V+  K DS   +++AASI AKVTRD R+  I  +
Sbjct: 147 DTVGPKQTYKNFLQGKLQEIGKEANIVVEEKADSKYANVSAASICAKVTRDYRITLIQQE 206

Query: 167 KYPDYGFDSHVGYP----TAKHQQ--VIKEKGPSCIHRLTFRPLRNL 207
             P        GYP    T K+ +   I         R +++ ++ +
Sbjct: 207 ILP--NDSIGSGYPGDPKTKKYLENTNIPFFVYPKYVRFSWQTIKTI 251


>gi|323449222|gb|EGB05112.1| hypothetical protein AURANDRAFT_12637 [Aureococcus anophagefferens]
          Length = 229

 Score = 95.5 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 82/221 (37%), Gaps = 35/221 (15%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAI---ILDPNNIPF---GINDSKKISHKKREELYE 73
            +      GIDE GRG + G +        I D + I      I+DSK+++ +KR +L++
Sbjct: 4   RRGEAVKLGIDEAGRGPVLGAMTFGTCYWSIADDDAIEASQKEIDDSKQLTDEKRSKLFD 63

Query: 74  KI-----TSSA--IISISSASHQY--IDKHNIHKATLDAIYHAVENL---QVIPRSALID 121
           +I        A  ++S +  S +   +   +++  + DA    ++ +         A +D
Sbjct: 64  RIAADERMGWAVEVVSAARISAEMLQVKPTSLNAISFDATCRLIQRVLDRGADVVEAFVD 123

Query: 122 GRSIPEDL----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171
               P+              +     K D++     AASI AKV RD  +       P  
Sbjct: 124 TVGNPDSYSERLTRAFDGKIKFTVAKKADALYKCTGAASICAKVCRDLSIARWTYDEPGV 183

Query: 172 -GFDSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLR 205
              D   GYP+       +        G     R ++ P +
Sbjct: 184 DDLDFGSGYPSDPACVAWLARNVHGVFGYPNFCRFSWAPAK 224


>gi|295658160|ref|XP_002789642.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb01]
 gi|226283127|gb|EEH38693.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb01]
          Length = 343

 Score = 95.1 bits (236), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 83/237 (35%), Gaps = 58/237 (24%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKREELYEKIT-- 76
            V G+DE GRG + GP++ +A  L  +            +DSK ++   R  L   +   
Sbjct: 57  CVLGVDEAGRGPVLGPMIYSAFYLPLSLHHSLLAKEHHFDDSKVLTPAVRTNLMRLLCTP 116

Query: 77  -----SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRSA 118
                +S    +   S + I    +               AT++ I   VE + V  +  
Sbjct: 117 DHSLNTSCGWGVKVLSARDISTGMLRSGTGNYNLNAQAMDATIELIICIVEKMGVNVKEV 176

Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMR------- 162
            ID    PE    +   +          K DS+  S++AAS+ AKVTRD  +        
Sbjct: 177 YIDTIGNPETYQKKLKRIFPALKITVTKKADSLYPSVSAASVCAKVTRDVALELCYEALV 236

Query: 163 ----IAHKKYPDYGFDSHVGYPTAKH--------QQVIKEKGPSCIHRLTFRPLRNL 207
                  ++    G+    GYP+              +   G  C  R ++   R L
Sbjct: 237 KQRGAMEQEGAADGW--GSGYPSDSKCVGWLKNDMDSLFGWGNEC--RFSWGTAREL 289


>gi|294654510|ref|XP_456567.2| DEHA2A05632p [Debaryomyces hansenii CBS767]
 gi|199428939|emb|CAG84523.2| DEHA2A05632p [Debaryomyces hansenii]
          Length = 375

 Score = 94.4 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 83/225 (36%), Gaps = 43/225 (19%)

Query: 25  PVAGIDEVGRGALAGPVVVA-AIILDPNNIPF----GINDSKKISHKKREELYEKITS-- 77
            V G+DE GRG + GP+V   A  L+  +       G  DSK +   KR +L++ I +  
Sbjct: 88  VVLGVDEAGRGPVLGPMVYGIAYSLESYSKDLQTKYGFADSKTLKDDKRRQLFQMIENED 147

Query: 78  ---SAIISISSASHQYID------KHNIHKATLDAIYHA----------VENLQVIPRSA 118
                 +  ++ +    D      +  + K + +    A          V    V     
Sbjct: 148 HELHGHVGWATTTMTAKDISSGMLQTVLGKGSYNLNEQAHDTTIQLIKQVLAKGVNVTKV 207

Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
            +D    P     +   +          K DSI   ++ AS++AKVTRD  +   +   P
Sbjct: 208 FVDTVGPPASYQAKLSKIFPTVAITVAKKADSIYPIVSTASVVAKVTRDLNLHFYNIHLP 267

Query: 170 -DYGFDSHVGYPTA------KHQQVIKEKGPSC-IHRLTFRPLRN 206
             +      GYP+        H  V +  G    + R +++  ++
Sbjct: 268 LIHNHALGSGYPSDPNTSKWLHANVDRVFGWCFGLVRFSWQTSKD 312


>gi|241957291|ref|XP_002421365.1| ribonuclease large subunit, putative [Candida dubliniensis CD36]
 gi|223644709|emb|CAX40699.1| ribonuclease large subunit, putative [Candida dubliniensis CD36]
          Length = 366

 Score = 94.4 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 73/195 (37%), Gaps = 38/195 (19%)

Query: 25  PVAGIDEVGRGALAGPVVVA-AIILD----PNNIPFGINDSKKISHKKREELYEKITS-- 77
            V G+DE GRG + G +V   A  L+         +G  DSK ++  KREEL+++I    
Sbjct: 90  IVLGVDEAGRGPVLGAMVYGIAYSLESFSSKLQKEYGFADSKVLTDVKREELFKQIEDPE 149

Query: 78  ---SAIISISSASHQYID-----------------KHNIHKATLDAIYHAVENLQVIPRS 117
                 I  ++ +    D                     H  T+D I   V    V    
Sbjct: 150 HELHKHIGWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTIDLIKQ-VLAKGVKISK 208

Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
             +D    P     +              K DSI   ++ AS++AKVTRD  ++  ++  
Sbjct: 209 IFVDTVGPPVTYQAKLKRFFPEIDVTVTKKADSIYPIVSTASVVAKVTRDTNIKFYNENL 268

Query: 169 PDY-GFDSHVGYPTA 182
           P   G     GYP+ 
Sbjct: 269 PLLQGQKLGSGYPSD 283


>gi|154333788|ref|XP_001563149.1| ribonuclease hii [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134060161|emb|CAM45568.1| putative ribonuclease HII [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 255

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 70/248 (28%), Positives = 101/248 (40%), Gaps = 77/248 (31%)

Query: 37  LAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSA--------------- 79
           +AGPV VAA +   +  P  + + DSK++    R E  E + +                 
Sbjct: 1   MAGPVSVAATLYRVSATPVRYTVGDSKRMKESARAETLEAMCAELSDAGIKGFLETTMRD 60

Query: 80  ---------------IISISSASHQYIDKHNIHKATLDAI----------YHAVENLQVI 114
                           +S      + I   NI  ATL+ +          Y+AV  LQ++
Sbjct: 61  GACCVVRYQQRQPLQAVSAVLVDIEVIHGRNILNATLEGMSAVCNTIVRSYNAVRGLQIL 120

Query: 115 P---RSALIDGRSIP---------------------------EDLPC----QAFAVIKGD 140
                + LIDG  +P                            D P        AVIKGD
Sbjct: 121 TPLTCAILIDGNRVPWTFLSSEERQQVRMQAVKNVEARKRIGVDYPVLDGFGCTAVIKGD 180

Query: 141 SISLSIAAASIIAKVTRDRL-MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199
           +  LSIAAAS++AKV RD   M + H+ +P YGFD H GY TA H+  +   GPS  HR+
Sbjct: 181 ATVLSIAAASVVAKVARDAYVMTVMHRAFPHYGFDYHKGYCTAAHKMELARWGPSRFHRV 240

Query: 200 TFRPLRNL 207
            + P++ +
Sbjct: 241 DYAPVKAV 248


>gi|325969836|ref|YP_004246028.1| ribonuclease HII [Vulcanisaeta moutnovskia 768-28]
 gi|323709039|gb|ADY02526.1| ribonuclease HII [Vulcanisaeta moutnovskia 768-28]
          Length = 198

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 84/196 (42%), Gaps = 36/196 (18%)

Query: 41  VVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITSSAI--ISISSASHQYIDKHNI 96
           +V+A ++ +  N     G+ DSK++S + R  L+  I  S +  I         ID++  
Sbjct: 1   MVIAIVVTNDMNKLREIGVKDSKELSPESRSRLF-IILKSILNYIDYEIIEPVIIDRYVN 59

Query: 97  HKA--------TLDAIYHAVENLQVIPRSALIDGRSIPEDL-----------PCQAFAVI 137
             A        T+  I  A+ N+QV   +  ID      +                 A+ 
Sbjct: 60  MNALNILEVEVTIKLINKALSNIQV--HTIYIDSPDPKPERFRDMIMERVGGNVNVIAMN 117

Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH-----QQVIKEKG 192
           K D +   ++AASI+AKV RD ++   H+++ D+G     GYP+        ++ I++ G
Sbjct: 118 KADKLIPVVSAASIVAKVVRDSIIERLHREFGDFG----SGYPSDPRTIAFLKRWIEKHG 173

Query: 193 -PSCIHRLTFRPLRNL 207
               I R ++   + +
Sbjct: 174 DLPPIVRRSWSTAKKM 189


>gi|71024097|ref|XP_762278.1| hypothetical protein UM06131.1 [Ustilago maydis 521]
 gi|46101780|gb|EAK87013.1| hypothetical protein UM06131.1 [Ustilago maydis 521]
          Length = 551

 Score = 92.8 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 63/175 (36%), Gaps = 31/175 (17%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80
            V G+DE GRG + GP+V            +    G  DSK ++ ++R+ L   +     
Sbjct: 89  CVLGVDEAGRGPVLGPLVYGIAYCPVSYQDDLKQIGFADSKALTAERRDSLLSALIDQNS 148

Query: 81  ---ISISSASHQYIDKHNIHKATLDAIYHA----------VENLQVIPRSALIDGRSIPE 127
               ++   S Q I    + +  ++    +          V    V      +D    P+
Sbjct: 149 HLGWAVRVMSPQDISAGMLRRRPINLNAQSSQATVSLIAGVLESGVDLTEIYVDTVGDPK 208

Query: 128 DLP------------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170
                           +     K D+I   + AASI AKVTRDR +     +Y +
Sbjct: 209 SYSKLLSSYFPRHSHIKWTVTSKADAIYPIVGAASIAAKVTRDRCVD--AWRYAE 261


>gi|293363602|ref|ZP_06610358.1| ribonuclease HII [Mycoplasma alligatoris A21JP2]
 gi|292552951|gb|EFF41705.1| ribonuclease HII [Mycoplasma alligatoris A21JP2]
          Length = 245

 Score = 92.4 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 55/203 (27%), Positives = 76/203 (37%), Gaps = 39/203 (19%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKI-SHKKREELYEKIT 76
           N   + G+DE G G   GP+V AA+ +  N        G+ DSK I + K+   L  +I 
Sbjct: 25  NQLNIIGVDETGVGDYFGPLVTAAVFIPNNLLEYFKNLGVKDSKLIKNEKQIHYLANEIK 84

Query: 77  SSAIISISSASH---QYIDKH--NIHKATLDAIYHAVENL-------QVIPRSALIDGRS 124
           S         S+     ID +  NIHK    A  HA+ +L        V      ID  +
Sbjct: 85  SKCYYKTYVLSNSGYNKIDNNYKNIHKLKFFAHSHAINSLEELLSLRNVKIDYIFIDQYT 144

Query: 125 I-------------------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165
                                 +         K +SI LS+AAASI+A   R  L+    
Sbjct: 145 TLNAFNKYYDEIIILNNWSKINEFKSPILLAHKAESIHLSVAAASILA---RAELLDSFK 201

Query: 166 KKYPDYGFDSHVGYPTAKHQQVI 188
           K    Y FD  +G       QV+
Sbjct: 202 KIKEIYNFDFLLGANQKVKNQVV 224


>gi|116200221|ref|XP_001225922.1| hypothetical protein CHGG_08266 [Chaetomium globosum CBS 148.51]
 gi|88179545|gb|EAQ87013.1| hypothetical protein CHGG_08266 [Chaetomium globosum CBS 148.51]
          Length = 344

 Score = 92.4 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 85/229 (37%), Gaps = 51/229 (22%)

Query: 28  GIDEVGRGALAGPVVVAAIILD-PNNIPF-----GINDSKKISHKKREELYEKIT----- 76
           G+DE GRG + GP+V     L  P + P        +DSK ++   R  L E +      
Sbjct: 63  GVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRTTHHFDDSKVLTPAVRASLMETLCTPTSD 122

Query: 77  --SSAIISISSASHQYI---------DKHNIHKATLDAIYHAVENL---QVIPRSALIDG 122
              S   ++ + S + I           +N++   +DA    ++ +    V  R   +D 
Sbjct: 123 LYESCGWAVDALSARDIGAGMLRPGLGAYNLNAQAMDATVELIKGVYARGVNVREIYVDT 182

Query: 123 RSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG- 172
              P     +   V          K DS+  S++AAS+ AKVTRD  +    K     G 
Sbjct: 183 IGQPAAYQAKLARVFPAAKVTVAKKADSLYPSVSAASVCAKVTRDVALETLWKARGGGGE 242

Query: 173 ------FDSHVGYPTAKH-QQVIKE-------KGPSCIHRLTFRPLRNL 207
                      GYP+       +K         GP C  R ++   +++
Sbjct: 243 EGVEETMAWGSGYPSDGRCVTWLKSNMHPVWGWGPEC--RFSWGTAKDM 289


>gi|156375344|ref|XP_001630041.1| predicted protein [Nematostella vectensis]
 gi|156217054|gb|EDO37978.1| predicted protein [Nematostella vectensis]
          Length = 569

 Score = 92.4 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 27/155 (17%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI-- 80
            GIDE GRG + GP+V        +        G  DSK ++ ++RE L+++++ +    
Sbjct: 31  VGIDEAGRGPVLGPMVYGICYCPLSKAEELKTTGFADSKTLTEEEREALFKELSENCHGY 90

Query: 81  --ISISSASHQ----------YIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
               I   +                + +   +   +   + +  V  +   +D     E 
Sbjct: 91  MGWVIDILTPNFLSNCMLQRTKCSLNEVSHNSAIGLIRLLLDSGVKVQEVYVDTVGPAEK 150

Query: 129 LPCQAFAVI---------KGDSISLSIAAASIIAK 154
              +   +          K D+    ++AAS+ AK
Sbjct: 151 YQDKLQKIFPEQKIVVTPKADAKFPVVSAASVCAK 185



 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 60/165 (36%), Gaps = 32/165 (19%)

Query: 46  IILDPNNIPFGIN--DSKKISHKKREELYEKITSSAI----ISISSASHQ---------- 89
           +I         I+  DSK ++ ++RE L+++++ +        I   +            
Sbjct: 311 VIYTQGTHLVAIDTQDSKTLTEEEREALFKELSENCHGYMGWVIDILTPNFLSNCMLQRT 370

Query: 90  YIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI---------KGD 140
               + +   +   +   + +  V  +   +D     E    +   +          K D
Sbjct: 371 KCSLNEVSHNSAIGLIRLLLDSGVKVQEVYVDTVGPAEKYQDKLQKIFPEQKIVVTPKAD 430

Query: 141 SISLSIAAASIIAKVTRDRLMRIA----HKKYPDYGFDSHVGYPT 181
           +    ++AAS+ AKV+RDR++          +     ++  GYP+
Sbjct: 431 AKFPVVSAASVCAKVSRDRVISAWEFSEDIIFTK---ETGSGYPS 472


>gi|316974057|gb|EFV57595.1| ribonuclease H2 subunit A [Trichinella spiralis]
          Length = 418

 Score = 92.4 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 28/162 (17%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYE---------- 73
           G+DE GRG + GP+V A  +   +N+         DSK ++  +R  +++          
Sbjct: 183 GVDEAGRGPVLGPMVYACGVCVTDNLEQLSTLKAKDSKTLTEDERSTIFKNMQSEKNSHL 242

Query: 74  -----KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128
                K+ S   IS S       + + I   T   +   V +  V+    ++D     E 
Sbjct: 243 FAYTMKLLSPVYISKSMLGRSKYNLNEISHDTAMELIQIVCDAGVVVDKVILDTVGPTEK 302

Query: 129 LPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLM 161
              +  +           K DS+   ++AASI AKVTRD  +
Sbjct: 303 YEAKLRSRFPKIDILVSKKADSLHTIVSAASICAKVTRDNHL 344


>gi|328462264|gb|EGF34369.1| ribonuclease HII [Lactobacillus rhamnosus MTCC 5462]
          Length = 93

 Score = 92.4 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 2/73 (2%)

Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81
             VAG+DEVGRG LAGPVV AA+IL P+   + +NDSK+++  +R+ LY  I + AI +
Sbjct: 4  YSHVAGLDEVGRGPLAGPVVTAAVIL-PHQFKWPVNDSKQLTAHERDVLYPHILTEAIAV 62

Query: 82 SISSASHQYIDKH 94
           I  A +  ID+ 
Sbjct: 63 GIGVADNHEIDRE 75


>gi|302413253|ref|XP_003004459.1| ribonuclease H2 subunit A [Verticillium albo-atrum VaMs.102]
 gi|261357035|gb|EEY19463.1| ribonuclease H2 subunit A [Verticillium albo-atrum VaMs.102]
          Length = 264

 Score = 92.4 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 71/175 (40%), Gaps = 36/175 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILD-PNNIPF-----GINDSKKISHKKREELYEKIT----- 76
           GIDE GRG + GP+  AA  L  P + P        +DSK ++   R  L   +      
Sbjct: 72  GIDEAGRGPVLGPMTYAAFYLPMPLSDPLLRETHHFDDSKVLTPAVRSALMRALCSPSTD 131

Query: 77  --SSAIISISSASHQYI--------DKHNIHKATLDAIYHAVENL---QVIPRSALIDGR 123
             +S   ++ S S + I        + +N++    DA    ++ +    V      +D  
Sbjct: 132 LAASCGYAVRSLSARDIASGMLSTANPYNLNAQAFDATVEIIKGVIARGVRVEEIYVDTV 191

Query: 124 SIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRD---RLMRIAHK 166
             P     +   V          K DS+   ++AAS+ AKVTRD    +M  AHK
Sbjct: 192 GQPAAYQAKLQRVFPSVKITVAKKADSLYPCVSAASVCAKVTRDAALEVMYEAHK 246


>gi|260946247|ref|XP_002617421.1| hypothetical protein CLUG_02865 [Clavispora lusitaniae ATCC 42720]
 gi|238849275|gb|EEQ38739.1| hypothetical protein CLUG_02865 [Clavispora lusitaniae ATCC 42720]
          Length = 345

 Score = 92.4 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 74/194 (38%), Gaps = 36/194 (18%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIIL-----DPNNIPFGINDSKKISHKKREELYEKI---- 75
            V G+DE GRG + GP+V           D     +G  DSK +    R+EL++ I    
Sbjct: 72  VVLGVDEAGRGPVLGPMVYGISYCLRDYQDHLKKKYGFADSKTLKDSTRQELFQLIDNEK 131

Query: 76  ---TSSAIISISSASHQYIDKHNIHKA----TLDAIYHAVENLQVIPRSALIDGR----- 123
                +   +  + + + I    +  A    + +    A +    + +  L+ G      
Sbjct: 132 HELHKNVGWATCTMTAKDISNGMLRSALGAGSYNLNEQAHDTTIQLIKDVLLSGVNVREI 191

Query: 124 -------------SIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
                         + +  P     V  K DSI   ++ AS++AKVTRD  ++  ++   
Sbjct: 192 FVDTVGPPVSYQAKLKKHFPSIDITVTKKADSIYPIVSTASVVAKVTRDLNLQWYNENVE 251

Query: 170 D-YGFDSHVGYPTA 182
           +  G     GYP+ 
Sbjct: 252 NLIGKCLGSGYPSD 265


>gi|218281130|ref|ZP_03487665.1| hypothetical protein EUBIFOR_00226 [Eubacterium biforme DSM 3989]
 gi|218217644|gb|EEC91182.1| hypothetical protein EUBIFOR_00226 [Eubacterium biforme DSM 3989]
          Length = 282

 Score = 92.0 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 67/192 (34%), Gaps = 25/192 (13%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKRE 69
           LE    +K     AG DEVG G   GPVVVA+ I+           GI DSK++   K  
Sbjct: 62  LEPATPQKEAQDQAGSDEVGTGDYFGPVVVASCIVTKEAREKLSHLGIQDSKQVDDTKIR 121

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQV--------IPRSALID 121
           +L   I      SI    +   +  +     +D          V        +P+  +ID
Sbjct: 122 KLAPLIKDVCPHSILIVPNSKYNDMHDSCNMVDMKCRLHNQAYVNLIHKGYTLPKQIVID 181

Query: 122 GR-------SIPEDLPCQAFAV---IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171
                       +  P     +    K ++  L++A ASI+A   R+  +         Y
Sbjct: 182 QFVQEKIYYRYLQGFPEVIRGITFETKAENKYLAVACASILA---RNAFLEAWDLMEEKY 238

Query: 172 GFDSHVGYPTAK 183
            F    G  +  
Sbjct: 239 DFKFEKGAGSKV 250


>gi|324575207|gb|ADY49933.1| Ribonuclease HII [Ascaris suum]
          Length = 60

 Score = 91.7 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 38/58 (65%)

Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           ++I  ASI+AKV RD+ M    KKYP YG++ H GY T  H   I++ GPS  HRLT+
Sbjct: 1   MAIKLASIVAKVRRDKYMARLAKKYPHYGYEIHKGYGTKAHMAAIRKHGPSAAHRLTY 58


>gi|167524000|ref|XP_001746336.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775098|gb|EDQ88723.1| predicted protein [Monosiga brevicollis MX1]
          Length = 596

 Score = 91.7 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 86/255 (33%), Gaps = 72/255 (28%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80
            V G+DE GRG + GP+V A               G  DSK++S  KR+EL++ I  +A 
Sbjct: 300 CVLGVDEAGRGPVLGPMVYAVAFAPLSENARMKKLGFADSKQLSEAKRDELFKVIKENAD 359

Query: 81  IS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL-------- 129
                +   +   I    + +   +    A E+   + +     G  I EDL        
Sbjct: 360 WMGWKVHMLAASDISAGMLSRTKHNLNAQAHESTVDLVKRLHAQGVQIKEDLTYRLRLNH 419

Query: 130 ------------------------PCQAFAVIKGDSISLS------------IAAA---- 149
                                         ++    + ++            IA A    
Sbjct: 420 RQLYVDTVGKAHIYQQQLENWLRPTIPNIKIVVESKLCVTHRVSDLCVLILDIANADVTY 479

Query: 150 ------SIIAKVTRDRLMRIAHKKYP---DYGFDSHVGYP----TAKHQQVIKE--KGPS 194
                 SI AKVTRD ++     ++P   +   D   GYP    T    + + +   G  
Sbjct: 480 PIVSAASICAKVTRDAVLTYW--RHPEQREIDNDFGCGYPGDSSTKAWLRKVLDPIFGFP 537

Query: 195 CIHRLTFRPLRNLSV 209
            + R ++   R+L +
Sbjct: 538 SLVRFSWSTARDLLL 552


>gi|218883330|ref|YP_002427712.1| Ribonuclease HII [Desulfurococcus kamchatkensis 1221n]
 gi|218764946|gb|ACL10345.1| Ribonuclease HII [Desulfurococcus kamchatkensis 1221n]
          Length = 255

 Score = 91.3 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 84/213 (39%), Gaps = 35/213 (16%)

Query: 27  AGIDEVGRGALAGPVVVAAII-LDPNNIPF---GINDSKKISHKKREELYEKITSSAI-I 81
            G+DE GRG   G +V+A +I L          G+ DSK +   KR  +   + S  I I
Sbjct: 9   IGVDEAGRGPFIGDMVIAGVIGLSSAFESLVSIGLRDSKLLEPLKRLMILNNMLSLDIDI 68

Query: 82  SISSASHQYIDKHNIHKAT---------LDAIYHAVENLQVIPRSALIDGRSIPEDL--- 129
             +  S  +ID+ N++              +  H +   Q       ID      D    
Sbjct: 69  VATYVSPIHIDRSNMNMLEYTVICSILKYLSYSHILRQHQGTGVRIYIDEVKGYNDKIGE 128

Query: 130 --------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                     + F   + D+   +++AAS++AK+ RD  ++       + G     GYP+
Sbjct: 129 CARGLYRGNVEIFIESRADAKYPAVSAASVVAKILRDSNIKALQVIAGETG----SGYPS 184

Query: 182 -AKHQQVIKEK----GPSCIH-RLTFRPLRNLS 208
               ++ +       G   ++ R ++  +++L+
Sbjct: 185 DPVSRRWLANMYRDDGEPPVYIRKSWGIVKDLA 217


>gi|296810182|ref|XP_002845429.1| ribonuclease H2 subunit A [Arthroderma otae CBS 113480]
 gi|238842817|gb|EEQ32479.1| ribonuclease H2 subunit A [Arthroderma otae CBS 113480]
          Length = 342

 Score = 90.9 bits (225), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 21/158 (13%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELYEKITSS 78
            V GIDE GRG + GP+V +A  L  +            +DS   S         K+ S+
Sbjct: 67  CVLGIDEAGRGPVLGPMVYSAFYLPMHLHKSLLAEEHHFDDS--HSLHNSCGWAVKVMSA 124

Query: 79  AIISISSASHQYIDKHNIH----KATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
             IS           +N++     AT++ I   VE  ++  +   +D    PE    +  
Sbjct: 125 RDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQRIDVKEVYVDTIGKPETHQARLL 184

Query: 135 AVI---------KGDSISLSIAAASIIAKVTRDRLMRI 163
            V          K DS+  S++AAS+ AKVTRD  +  
Sbjct: 185 RVFPGLKITVAKKADSLYPSVSAASVCAKVTRDAALEA 222


>gi|325294626|ref|YP_004281140.1| ribonuclease HIII [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065074|gb|ADY73081.1| ribonuclease HIII [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 270

 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS 82
            G DE G+G   GP+VVA +  D N     +  G+ DSK +S +K  ++ E+I       
Sbjct: 75  VGCDEAGKGEFVGPLVVACVCADKNCLRKLLDLGVKDSKALSREKILKMAEEIKKYCRGR 134

Query: 83  ISSASHQYIDKH-----NIHKATLDAIYHAVENL--QVIPRSALIDGRS------IPEDL 129
           +        +K      N+++   D     + +L  +  P+  ++D  S      + E  
Sbjct: 135 VKVIMPFQYNKLYEKYKNLNRLLEDIYVELIGSLLAKYSPQEVIVDKFSSRIEPLLKEKF 194

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
              +F V+      L +AAASI+AK  R + M    K+
Sbjct: 195 KNTSFKVVPKAEKDLVVAAASIVAKAERLKAMEKLSKE 232


>gi|266625485|ref|ZP_06118420.1| ribonuclease HII [Clostridium hathewayi DSM 13479]
 gi|288862611|gb|EFC94909.1| ribonuclease HII [Clostridium hathewayi DSM 13479]
          Length = 78

 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 39/64 (60%), Gaps = 4/64 (6%)

Query: 13 ELEAM-VREKNMW---PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
           LE M   E+       V GIDE GRG LAGPVV  A+IL  +     +NDSKK+S K+R
Sbjct: 15 RLEQMKSYERQYGDHILVCGIDEAGRGPLAGPVVAGAVILPGDCEILFLNDSKKLSEKRR 74

Query: 69 EELY 72
          EEL+
Sbjct: 75 EELF 78


>gi|15790853|ref|NP_280677.1| ribonuclease HII [Halobacterium sp. NRC-1]
 gi|169236599|ref|YP_001689799.1| ribonuclease HII [Halobacterium salinarum R1]
 gi|74568991|sp|Q9HNR3|RNH2_HALSA RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|189043604|sp|B0R6T4|RNH2_HALS3 RecName: Full=Ribonuclease HII; Short=RNase HII
 gi|10581416|gb|AAG20157.1| RNAase H [Halobacterium sp. NRC-1]
 gi|167727665|emb|CAP14453.1| ribonuclease HII [Halobacterium salinarum R1]
          Length = 212

 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 22/198 (11%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87
           G+DE G+G + G +  AA+  DP  +P G+ DSK++S  +R EL +++ +S  + ++   
Sbjct: 5   GVDEAGKGPVLGSMFAAAVAGDPAAVPDGVADSKRLSADRRAELDDRVRASMRVGVAEVP 64

Query: 88  HQYIDKHNIHKATLDAIYHAVENLQVIPR--SALIDGRSIPEDLPCQ-----------AF 134
              ID       TL     A    +V+    +  +D   + E    +             
Sbjct: 65  VDRIDDPETDMNTLTVAAQADALGRVVADGMAGYVDAGDVNEQRFGRRVANRVAADVAVT 124

Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----TAKHQQV-IK 189
           A    D     +AAASI+AKV RD  +      +     D   GYP    T +     ++
Sbjct: 125 AEHGADDEYDLVAAASIVAKVARDAHVDALAAAFDA---DIGSGYPSDSTTREFLAAYVR 181

Query: 190 EKGPSCI-HRLTFRPLRN 206
           E G      R +++  R+
Sbjct: 182 EHGELPECARASWQTSRD 199


>gi|297517117|ref|ZP_06935503.1| ribonuclease HII [Escherichia coli OP50]
          Length = 69

 Score = 90.5 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 39/56 (69%)

Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80
           VAG+DEVGRG L G VV AA+ILDP     G+NDSKK+S K+R  L E+I   A+
Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKAL 66


>gi|302927067|ref|XP_003054420.1| hypothetical protein NECHADRAFT_75114 [Nectria haematococca mpVI
           77-13-4]
 gi|256735361|gb|EEU48707.1| hypothetical protein NECHADRAFT_75114 [Nectria haematococca mpVI
           77-13-4]
          Length = 343

 Score = 90.5 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 70/192 (36%), Gaps = 36/192 (18%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELYEKIT----- 76
           G+DE GRG + GP+V     L               +DSK ++   R +L   +      
Sbjct: 71  GVDEAGRGPVLGPMVYGVFFLPLTISDSLLRDTHHFDDSKVLTAAVRSKLMRTLCTPGSD 130

Query: 77  --SSAIISISSASHQYIDKHNIHKAT---LDAI--------YHAVENLQVIPRSALIDGR 123
             +    +I + S + I    +H  T   L+A           A     V  +   +D  
Sbjct: 131 LHTECGWAIKALSARDITTGMLHPTTTYNLNAQALDATVDLIKAAYAAGVNVQEIYVDTV 190

Query: 124 SIP--------EDLPCQAFAVI-KGDSISLSIAAASIIAKVTRD---RLMRIAHKKYPDY 171
             P           P     V  K DS+   ++AAS+ AKVTRD    ++  A  +  + 
Sbjct: 191 GPPASHQAKLQRFFPTAKITVTKKADSLFACVSAASVCAKVTRDATLEVLSDAKGELTEN 250

Query: 172 GFDSHVGYPTAK 183
           G     GY + K
Sbjct: 251 GMGWGSGYSSDK 262


>gi|319789920|ref|YP_004151553.1| ribonuclease HIII [Thermovibrio ammonificans HB-1]
 gi|317114422|gb|ADU96912.1| ribonuclease HIII [Thermovibrio ammonificans HB-1]
          Length = 270

 Score = 89.4 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 27/195 (13%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS 82
            G DE G+G   GP+VVA I+ D       I  G+ DSKK+S++K EEL  +IT +    
Sbjct: 75  IGCDEAGKGEFVGPLVVACIVADEKCLKRLIELGVKDSKKLSNEKVEELASEITETCHGK 134

Query: 83  ISSASHQYIDK-----HNIHKATLDAIYHAVENL--QVIPRSALIDGRSIPEDLPCQAFA 135
           +     +  ++      NI++         V +L  +  P+  ++D              
Sbjct: 135 VKLLIPEKYNRAYSKFKNINRLLEAVYREIVSDLCEKFSPKVVVVD--KFSNRAEEVLKD 192

Query: 136 VIKGDSI--------SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187
           V+KG  +         L++AAASI+AK  R + M+   K++     + + G         
Sbjct: 193 VVKGARLEVRPKAEDDLAVAAASIVAKAVRLKTMKELEKRFKVKLPEGNTG------LAE 246

Query: 188 IKEKGPSCIHRLTFR 202
           + +K P  +H   F+
Sbjct: 247 LLKKTPKELHEKLFK 261


>gi|315425616|dbj|BAJ47275.1| ribonuclease HII [Candidatus Caldiarchaeum subterraneum]
          Length = 189

 Score = 89.4 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/180 (28%), Positives = 87/180 (48%), Gaps = 25/180 (13%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81
           + G+DE GRG + GP+VVAA+  + + +P     G+ DSK +S ++REE++EK+ +S  +
Sbjct: 2   LCGVDEAGRGCVVGPLVVAAVAAERDELPLLRALGVADSKTLSPRRREEIFEKLRASFRV 61

Query: 82  SISSASHQYID---KHNIHKATLDAIYHAVENL--QVIPRSALIDGRSI----------- 125
                S + I    + N      D  Y  +  L     PR   +D               
Sbjct: 62  GYMLVSPRRISSCLRVNGGDGLNDLEYGVMAELARSFRPRILFVDSPDRDVRRARRRLLE 121

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKH 184
              +      +++GD   + +AAAS++AKV RDR + +  ++  D+G     GYP+  +H
Sbjct: 122 KLGVEMDVRCMVRGDRRHVLVAAASVVAKVVRDRKVAMLRRRLGDFG----SGYPSDPRH 177


>gi|171689874|ref|XP_001909876.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944899|emb|CAP71010.1| unnamed protein product [Podospora anserina S mat+]
          Length = 342

 Score = 89.0 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 87/242 (35%), Gaps = 61/242 (25%)

Query: 25  PVA-GIDEVGRGALAGPVVVAAIILDPNNIPFGIN------DSKKISHKKREELYEKI-- 75
           PV  G+DE GRG + GP+V     L        +       DSK ++ + R  L + +  
Sbjct: 53  PVCLGVDEAGRGPVLGPMVYGIFYLPLPLSDPLLRQTHHFDDSKVLTPQVRSSLMQTLST 112

Query: 76  --------TSSA--IISISSASHQYIDK------HNIHKATLDAIYHAVENL---QVIPR 116
                      A  ++S    S   +        +N++   +DA    ++ +    V  +
Sbjct: 113 AGSDLHQSCGWATTLLSAGDISAGMMRPSNAGGSYNLNAQAMDATVQLIQGIYDRGVNIQ 172

Query: 117 SALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHK- 166
              +D    P     +   +          K DS+   ++AAS+ AKVTRD  + +  K 
Sbjct: 173 EIYVDTIGQPAAYQKKLERIFPTAKITVAKKADSLYPCVSAASVCAKVTRDAALEVLWKT 232

Query: 167 --KYPD-----------YGFDSHVGYPTAKH-QQVIK-------EKGPSCIHRLTFRPLR 205
             + P               +   GYP+ +     ++         GP C  R ++   +
Sbjct: 233 RGRPPAREEEKDKNEEDTDMEWGSGYPSDQRCVTWLRGNMHPVFGWGPEC--RFSWGTAK 290

Query: 206 NL 207
           ++
Sbjct: 291 DM 292


>gi|312210372|emb|CBX90459.1| similar to ribonuclease hi large subunit [Leptosphaeria maculans]
          Length = 357

 Score = 88.2 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 77/249 (30%), Gaps = 69/249 (27%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPF------GINDSKKISHKKREEL------- 71
            V G+DE GRG + GP+V A   L  +            NDSK ++   R  L       
Sbjct: 59  VVLGVDEAGRGPVLGPMVYALFYLPLSLHHSLLADTHHFNDSKVLTADFRTSLMRTLCTP 118

Query: 72  YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHA----------VENLQVIPRSALID 121
              + ++A  +  S S Q I  H +  +  +    A          V    V      ID
Sbjct: 119 STDLHAAAGWATRSLSAQDISAHMLSPSVYNLNAQAMDATIDLIKGVLEKGVNVTDIYID 178

Query: 122 GRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172
               PE    +   +          K DS+   ++AAS+ AKVTRD         Y  Y 
Sbjct: 179 TIGKPEIYQKKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRD---AALEVGYGKYH 235

Query: 173 FDS----------------------------HVGYPTAKHQQVIKEKGPSCIH------R 198
                                            GYP+    Q   ++    +       R
Sbjct: 236 DHDHSHSQSSSTDVLNAQTQTQDPVKATVSWGSGYPSDPRTQAWLKQNMDPVFGWGTECR 295

Query: 199 LTFRPLRNL 207
            ++   + L
Sbjct: 296 HSWGTAKEL 304


>gi|302800969|ref|XP_002982241.1| hypothetical protein SELMODRAFT_233940 [Selaginella moellendorffii]
 gi|300149833|gb|EFJ16486.1| hypothetical protein SELMODRAFT_233940 [Selaginella moellendorffii]
          Length = 261

 Score = 88.2 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 69/205 (33%), Gaps = 31/205 (15%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPF-------GINDSKKISHKKREELYEKITSSA 79
            GIDE GRG + GP+V                    G+        K R+   E      
Sbjct: 12  MGIDEAGRGPVLGPMVYGCAYCAVAYKEELASLKFAGMRFQDIDRGKTRKAFREL----- 66

Query: 80  IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR--------SIPEDLPC 131
                         ++I   +   +   V +  V+     +D           + E  P 
Sbjct: 67  --EGGPIDGVKRSLNDISYDSAIGLIKLVLSRGVLLSEVYVDTVGDAEKYQARLSELFPH 124

Query: 132 QAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--VGYP-TAKHQQV 187
             F V K  DS+   ++AASI AKVTRD+ ++             +   GYP   + +  
Sbjct: 125 IKFTVAKKADSLFPIVSAASIAAKVTRDQALKSWVMDEAGCAISRNFGSGYPGDPETKAW 184

Query: 188 IKEK-----GPSCIHRLTFRPLRNL 207
           +++      G   + R ++   + L
Sbjct: 185 LEQHMDDVFGFPSLVRFSWATCKPL 209


>gi|302765497|ref|XP_002966169.1| hypothetical protein SELMODRAFT_439531 [Selaginella moellendorffii]
 gi|300165589|gb|EFJ32196.1| hypothetical protein SELMODRAFT_439531 [Selaginella moellendorffii]
          Length = 361

 Score = 87.8 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 70/202 (34%), Gaps = 30/202 (14%)

Query: 27  AGIDEVGRGALAGPVV----VAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82
            GIDE GRG + GP+V      A+            D  +   K R+   E         
Sbjct: 1   MGIDEAGRGPVLGPMVYGCAYCAVAYKEELASLKFADIDR--GKTRKAFREL-------E 51

Query: 83  ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR--------SIPEDLPCQAF 134
                      ++I   +   +   V +  V+     +D           + E  P   F
Sbjct: 52  GGPIDGVKRSLNDISYDSAIGLIKLVLSRGVLLSEVYVDTVGDAEKYQARLSELFPHIKF 111

Query: 135 AVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--VGYP-TAKHQQVIKE 190
            V  K DS+   ++AASI AKVTRD+ ++             +   GYP     +  +++
Sbjct: 112 TVAKKADSLFPIVSAASIAAKVTRDQALKSWVMDEAGCTISRNFGSGYPGDPDTKAWLEQ 171

Query: 191 K-----GPSCIHRLTFRPLRNL 207
                 G   + R ++   + L
Sbjct: 172 HMDDVFGFPSLVRFSWATCKPL 193


>gi|289613504|emb|CBI59529.1| unnamed protein product [Sordaria macrospora]
          Length = 397

 Score = 87.8 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 65/174 (37%), Gaps = 35/174 (20%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGIN------DSKKISHKKREELYEKITSS--- 78
           G+DE GRG + GP+V +A  L        +       DSK ++   R  L +++ +    
Sbjct: 55  GVDEAGRGPVLGPMVYSAFYLPLTLSDPLLKQKHSFDDSKVLTPAVRLSLMKELCTKETE 114

Query: 79  --------------AIISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALID 121
                           IS           +N+++  +DA    ++ +    V      ID
Sbjct: 115 LHDNCGYATSSLSPLSISSGMLKASKSQIYNLNQQAMDATIELIKGIYKRGVNVTDIFID 174

Query: 122 GRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHK 166
               P     +   V          K DS+   ++AAS++AKVTRD  + +   
Sbjct: 175 TIGQPAAYQKKLERVFPTAKITVAKKADSLYPVVSAASVVAKVTRDIALEVLWA 228


>gi|39939117|ref|NP_950883.1| ribonuclease HII family 2 [Onion yellows phytoplasma OY-M]
 gi|39722226|dbj|BAD04716.1| ribonuclease HII Family 2 [Onion yellows phytoplasma OY-M]
          Length = 330

 Score = 87.8 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 67/170 (39%), Gaps = 25/170 (14%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-----INDSKKISHKKREELYEKITS 77
             P  G DEVG G + GPV+V  + L   NI F      I +SKKIS +K  +L   I  
Sbjct: 116 YLPSIGSDEVGTGDVFGPVIVCCVYLTAKNIVFLQKLGTIAESKKISDEKIMQLAPLIMK 175

Query: 78  SAIISISSASHQY----IDKHNIHKATLDAIYHAVEN--LQVIPRS-ALIDGRSIPEDLP 130
             I S+           I + N++K        A++   L+  P    ++D    P++  
Sbjct: 176 EVIYSVKIMMPLEYNQTIKQCNLNKIKALMHNEAIKQTVLKASPNVPVILDQFCFPKNYF 235

Query: 131 C-------------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                         +     K DS   S+A AS+IA+      +    K+
Sbjct: 236 NYLQDQKAQNEIYTKIIFETKADSSYFSVAVASVIARYLFLTQIAKLSKQ 285


>gi|260584114|ref|ZP_05851862.1| ribonuclease HIII [Granulicatella elegans ATCC 700633]
 gi|260158740|gb|EEW93808.1| ribonuclease HIII [Granulicatella elegans ATCC 700633]
          Length = 304

 Score = 87.0 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 27/179 (15%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79
           W V G DEVG G+  GP+ VA   +  N I      G+ DSK ++  + +E+  KI    
Sbjct: 89  WGVIGSDEVGTGSYFGPLTVACAFVPENLIKELQILGVKDSKILTDSQIQEIVPKIKELV 148

Query: 80  IISISSASHQYIDK----HNIHKATLDAIYHAVENLQVIP-----RSALIDGRSIPEDL- 129
              + +   +  ++     N+++        A++ L         ++ LID    P +  
Sbjct: 149 PYKLLTLWPEKYNEVQQTKNLNEMKALLHNQAIKRLYQQINADLLQAVLIDEFCSPSNYY 208

Query: 130 --------PCQAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
                   P +A      KG+S  +++AAAS+IA   RD  +        +YG+    G
Sbjct: 209 RYLGDQSAPLKAITYFKTKGESHHIAVAAASMIA---RDAFLEGLKTLSKEYGYPLLSG 264


>gi|256847956|ref|ZP_05553400.1| ribonuclease HIII [Lactobacillus coleohominis 101-4-CHN]
 gi|256715016|gb|EEU29993.1| ribonuclease HIII [Lactobacillus coleohominis 101-4-CHN]
          Length = 306

 Score = 86.7 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 24/166 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           V G DEVG G+  GP+  AA+ +D +++      G+ DSKK+S     ++ ++I +    
Sbjct: 94  VLGSDEVGTGSYFGPLTTAAVFVDQDHLASLRKLGVEDSKKLSDPTIIKIAKQIMAQCPY 153

Query: 82  SISSASHQYIDKHNI--HKATLDAIYHAV-------ENLQVIPRSALIDGRSIP------ 126
            + +   Q  ++     ++A L AI H         +   V P + LID    P      
Sbjct: 154 HVVNVKPQDYNRLIRKYNQAQLKAICHNFVLGKVLNQIAPVQPAAILIDQFVQPSTYFRY 213

Query: 127 -----EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                  +    F   KG+S  L++AAASI+A+    + M     +
Sbjct: 214 VRDQSPIIDKHVFFKEKGESYHLAVAAASIVARYISLQTMDDLSAR 259


>gi|257870169|ref|ZP_05649822.1| ribonuclease HIII [Enterococcus gallinarum EG2]
 gi|257804333|gb|EEV33155.1| ribonuclease HIII [Enterococcus gallinarum EG2]
          Length = 311

 Score = 86.3 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 69/183 (37%), Gaps = 27/183 (14%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
           W V G DEVG G+  GP+VV A+    + +P     G+ DSK ++  +   +  KI    
Sbjct: 93  WSVVGSDEVGNGSYFGPLVVCAVYASKDQLPALKALGVKDSKMLTDPQIRAMAPKIKKLV 152

Query: 80  IISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED-- 128
              + +      ++      T+         A+  L        P + LID  +  ++  
Sbjct: 153 PYQLLTVEPTKYNEIQPKYNTVRMKVALHNQAIRLLLQKIAPKTPDAILIDQFTSEKNYR 212

Query: 129 ---------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
                    +  + F   KG+   L++AAASI+ +      +    K   + G     G 
Sbjct: 213 TYLKSEKNQITEKLFFATKGEQYHLAVAAASILCRTV---FLEELEKASQEVGLQLPSGA 269

Query: 180 PTA 182
            + 
Sbjct: 270 GSK 272


>gi|145636491|ref|ZP_01792159.1| ribonuclease HII [Haemophilus influenzae PittHH]
 gi|145270316|gb|EDK10251.1| ribonuclease HII [Haemophilus influenzae PittHH]
          Length = 57

 Score = 85.5 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/48 (58%), Positives = 35/48 (72%)

Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68
          +    +AG+DEVGRG L G VV AA+ILDP+N   G+ DSKK+S KKR
Sbjct: 6  QGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKR 53


>gi|164422805|ref|XP_963372.2| hypothetical protein NCU09608 [Neurospora crassa OR74A]
 gi|157069829|gb|EAA34136.2| hypothetical protein NCU09608 [Neurospora crassa OR74A]
          Length = 381

 Score = 85.5 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 67/185 (36%), Gaps = 35/185 (18%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN------DSKKISHKKREE 70
            +   N     G+DE GRG + GP+V +A  L        +       DSK ++   R  
Sbjct: 36  QLLADNTPCCLGVDEAGRGPVLGPMVYSAFYLPLTLSDPLLKQKHSFDDSKVLTPAVRLS 95

Query: 71  LYEKITSS-----------------AIISISSASHQYIDKHNIHKATLDAIYHAVENL-- 111
           L +++ +                    IS           +N+++  +DA    ++ +  
Sbjct: 96  LMKELCTKDTELHDNCGYATSSLSPLSISSGMLKASKAQIYNLNQQAMDATIALIKGIYE 155

Query: 112 -QVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLM 161
             V      ID    P     +   V          K DS+   ++AAS++AKVTRD  +
Sbjct: 156 RGVNVTDIFIDTIGQPAAYQKKLERVFPTAKITVAKKADSLYPVVSAASVVAKVTRDIAL 215

Query: 162 RIAHK 166
            +   
Sbjct: 216 EVLWA 220


>gi|85057383|ref|YP_456299.1| ribonuclease HIII [Aster yellows witches'-broom phytoplasma AYWB]
 gi|84789488|gb|ABC65220.1| ribonuclease HIII [Aster yellows witches'-broom phytoplasma AYWB]
          Length = 330

 Score = 85.1 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 63/170 (37%), Gaps = 25/170 (14%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHKKREELYEKITS 77
             P  G DEVG G + GPVVV  + L   NI F      I +SKKIS +K   +   I  
Sbjct: 116 YLPSIGSDEVGTGDVFGPVVVCCVYLTAKNIAFLQNLGIIAESKKISDEKIINIAPLIMK 175

Query: 78  SAIISISSASHQY----IDKHNIHKATLDAIYHAVEN--LQVIPRS-ALIDGRSIPEDLP 130
             I S            I + N++K        A++    +  P    ++D    P++  
Sbjct: 176 EVIYSSKIMMPLEYNQIIKQCNLNKIKALMHNEAIKQTVFKAPPNVPVILDQFCFPKNYF 235

Query: 131 C-------------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                               K DS   S+A AS+IA+      +    K+
Sbjct: 236 NYLQDQKDQNEVYTNIIFETKADSSYFSVAVASVIARYLFLTQIAKLSKQ 285


>gi|228993279|ref|ZP_04153195.1| Ribonuclease HIII [Bacillus pseudomycoides DSM 12442]
 gi|228766347|gb|EEM14990.1| Ribonuclease HIII [Bacillus pseudomycoides DSM 12442]
          Length = 333

 Score = 85.1 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 93/221 (42%), Gaps = 37/221 (16%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               +AG DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +  E+ +++ S
Sbjct: 114 GTMSIAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLS 173

Query: 78  SAIIS---ISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSIPE 127
               S   + +  +  + +   ++  L A+ H  A+ NL        P   LID  + P+
Sbjct: 174 VVPYSSLVLHNEKYNELFEKGNNQGKLKALLHNKALTNLLKKIAPTKPEGILIDQFTQPD 233

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172
                            +   KG+S+ L++AAASI+A+ +     D L + A    P  G
Sbjct: 234 TYYKYLTKQKEVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 292

Query: 173 FDSHVGYPTAKHQQVI-KEKGPSC--IH----RLTFRPLRN 206
               V    AK  Q + KE  P    +H       FR L+ 
Sbjct: 293 AGKQVDIAAAKLIQKLGKEHLPEFVKLHFANTEKAFRLLKK 333


>gi|283769498|ref|ZP_06342394.1| ribonuclease HIII [Bulleidia extructa W1219]
 gi|283103766|gb|EFC05152.1| ribonuclease HIII [Bulleidia extructa W1219]
          Length = 281

 Score = 84.7 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 74/195 (37%), Gaps = 33/195 (16%)

Query: 7   PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKK 62
           P +P ++L         +P AG DEVG G   GPVVV A  +  N +      GI DSK 
Sbjct: 62  PNQPSYKL---------YPQAGSDEVGTGDYFGPVVVCASYVCENQLDLLRSYGITDSKA 112

Query: 63  ISHKKREELYEKITSSAIISISSASHQYID----KHNIHKATLDAIYHAVENLQVI---P 115
           +S K  ++  + + +     I S S +  +    ++N++         A   L      P
Sbjct: 113 MSDKDIQKAAKSLQNQFTHVIFSLSPKAYNDLHRRYNMNATKALLHNQAYLALSKRVDLP 172

Query: 116 RSALIDGRS----------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165
              ++D  +             ++  +     K +S   S+A AS+ A   R+R +    
Sbjct: 173 EICMVDQFTAEKNYFSYLAYEPEIFHRLQFETKAESRYASVALASVFA---RNRFLEEWS 229

Query: 166 KKYPDYGFDSHVGYP 180
                Y F    G  
Sbjct: 230 YMEEKYNFHFQKGAG 244


>gi|114675613|ref|XP_001169836.1| PREDICTED: similar to Ribonuclease H2, large subunit isoform 1 [Pan
           troglodytes]
          Length = 255

 Score = 84.7 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 72/196 (36%), Gaps = 33/196 (16%)

Query: 41  VVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAIISIS--SASHQYID-- 92
           +V A          +     + DSK +   +RE L+ K+  +  +  +    S   I   
Sbjct: 1   MVYAICYCPLSRLADLEALKVADSKTLLESERERLFAKMEDTDFVGWALDVLSPNLISTS 60

Query: 93  -----KHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDL---------PCQAFA 135
                K+N++  + D     ++      V      +D   +PE             +   
Sbjct: 61  MLGRVKYNLNSLSHDTATGLIQYALYQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTV 120

Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHVGYPT-AKHQQVIKEK- 191
             K D++   ++AASI AKV RD+ ++     +K  D   D   GYP   K +  +KE  
Sbjct: 121 KAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDSDTDYGSGYPNDPKTKAWLKEHV 180

Query: 192 ----GPSCIHRLTFRP 203
               G     R ++R 
Sbjct: 181 EPVFGFPQFVRFSWRT 196


>gi|326693332|ref|ZP_08230337.1| ribonuclease HIII [Leuconostoc argentinum KCTC 3773]
          Length = 313

 Score = 84.3 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 26/170 (15%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
           W V G DEVG GA  GP+  AA+ +  + +      GI DSK ++  K  ++  +I ++ 
Sbjct: 98  WSVLGSDEVGAGAYFGPLTTAAVYVPKDQLAWVRQLGIADSKTLTDAKMRQIAPEIIANL 157

Query: 80  IISISSASHQYIDKHNI--HKATLDAIYHAVENLQVI-------PRSALIDGRS-----I 125
              + +   +  ++     +   + AI H     +V+       P + LID  +      
Sbjct: 158 PHHVVNLMPEKYNQMQPTNNVNQMKAISHNFVLGKVLAKIAPTTPDAILIDQFAQASTYF 217

Query: 126 PEDLPCQAFAVI--------KGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                 Q   +I        KG+   LS+AAASI+A+V     M    ++
Sbjct: 218 KYLTQAQQSPIIKNNVHFTTKGEQYHLSVAAASILARVVELDSMAKLSEE 267


>gi|196034532|ref|ZP_03101941.1| ribonuclease HIII [Bacillus cereus W]
 gi|228929603|ref|ZP_04092621.1| Ribonuclease HIII [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|229124121|ref|ZP_04253313.1| Ribonuclease HIII [Bacillus cereus 95/8201]
 gi|195993074|gb|EDX57033.1| ribonuclease HIII [Bacillus cereus W]
 gi|228659423|gb|EEL15071.1| Ribonuclease HIII [Bacillus cereus 95/8201]
 gi|228829990|gb|EEM75609.1| Ribonuclease HIII [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 337

 Score = 83.6 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 87/224 (38%), Gaps = 38/224 (16%)

Query: 4   NSIPERPHFELEAMVREKNMWP--------VAGIDEVGRGALAGPVVVAAIILDPNNIP- 54
            ++P+ P   ++  V      P        + G DEVG G   GP+ V A+ +D   IP 
Sbjct: 93  QTVPQTPKIAVKKSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPL 152

Query: 55  ---FGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKH-----NIHKATLDAIYH 106
               G+ DSK ++ ++   + +++      S     ++  ++      N  K        
Sbjct: 153 LKELGVKDSKNLNDEQITAIAKQLLHVVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNK 212

Query: 107 AVENL-----QVIPRSALIDGRSIPEDL-----------PCQAFAVIKGDSISLSIAAAS 150
           A+ NL        P   LID  + P+                 +   KG+S+ L++AAAS
Sbjct: 213 AITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENVYFATKGESVHLAVAAAS 272

Query: 151 IIAKVT----RDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
           I+A+ +     D L + A    P  G    V    AK  Q + +
Sbjct: 273 ILARYSFVKQFDELSKKAGMPLPK-GAGKQVDIAAAKLIQKLGK 315


>gi|294155370|ref|YP_003559754.1| ribonuclease HII [Mycoplasma crocodyli MP145]
 gi|291599873|gb|ADE19369.1| ribonuclease HII [Mycoplasma crocodyli MP145]
          Length = 246

 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 92/227 (40%), Gaps = 41/227 (18%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----G 56
           +F  +  E    E+++    K    + G+DE G G   GP++ AA+++    I +    G
Sbjct: 6   LFDTNKKEETIIEIDSSFSFKE-KRIIGVDETGVGDYFGPLISAAVLVSDKQIEYLKSIG 64

Query: 57  INDSKKISHKKR-EELYEKITSSAIISISSASHQYIDK-----HNIHKATLDAIYHAVEN 110
           + DSKKI+   R  +L  +I S  +  + + S+   ++      N +K       H + +
Sbjct: 65  VKDSKKITSDSRIIDLANQIKSKCLYKVYTLSNAGYNRVEQTYRNSNKLKFFTHAHVINS 124

Query: 111 LQVI-------PRSALIDGRSIP-------------------EDLPCQAFAVIKGDSISL 144
           L+ +            ID  +                     +          K +SI +
Sbjct: 125 LEELLESRGSEYDYVFIDQYTTKNAFIEYFNNMIYINNWSSIKVFKKPILLSHKAESIHI 184

Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191
           S+AAASI+A   R  L+    K    Y FD  +G  + + ++++++ 
Sbjct: 185 SVAAASILA---RAELLENMKKMKAKYNFDFKLG-ASKQVKELVQKF 227


>gi|302308334|ref|NP_985219.2| AER363Wp [Ashbya gossypii ATCC 10895]
 gi|299789405|gb|AAS53043.2| AER363Wp [Ashbya gossypii ATCC 10895]
          Length = 304

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 81/225 (36%), Gaps = 41/225 (18%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-----FGINDSKKISHKKREELYEKI 75
           +    + G+DE GRG + GP+V A      +         G +DSKK++   R  L+ KI
Sbjct: 32  EGDAVILGVDEAGRGPVLGPMVYAVAYCTVSYEATIVRQHGFDDSKKLTDAVRRTLFGKI 91

Query: 76  TSSAIISISSA----SHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRSA 118
            ++ +  I  A    S   I    +                T  A+   V +  V     
Sbjct: 92  CAAELAGIGFATTGLSPAAISSGMLRYPPTKNYNLNEQAHDTTIALIQGVLDAGVRVEHV 151

Query: 119 LIDGRSIPEDLP---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
            +D    P             C+     K DS    ++ AS++AKVTRD      H   P
Sbjct: 152 YVDTVGPPLAYQAKLQQRFPACKITVAKKADSTFPVVSVASVVAKVTRD---VWLHALRP 208

Query: 170 DYGFDSHVGYPTAK------HQQVIKEKGPSC-IHRLTFRPLRNL 207
                   GYP  +      H++     G S  + R +++  R L
Sbjct: 209 TPDDVLGSGYPGDQKTVAWLHRECRPLFGWSPELVRFSWQTCRTL 253


>gi|228999329|ref|ZP_04158909.1| Ribonuclease HIII [Bacillus mycoides Rock3-17]
 gi|228760526|gb|EEM09492.1| Ribonuclease HIII [Bacillus mycoides Rock3-17]
          Length = 338

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 94/221 (42%), Gaps = 37/221 (16%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               +AG DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +  E+ +++ +
Sbjct: 119 GTMSIAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLN 178

Query: 78  SAIIS---ISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSIPE 127
               S   + +  +  + +   ++  L A+ H  A+ NL        P   LID  + P+
Sbjct: 179 VVPYSSLVLHNEKYNELFEKGNNQGKLKALLHNKALTNLLKKIAPTKPEGILIDQFTQPD 238

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172
                            +   KG+S+ L++AAASI+A+ +     D L + A    P  G
Sbjct: 239 TYYKYLTKQKEVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 297

Query: 173 FDSHVGYPTAKHQQVI-KEKGPSC--IH----RLTFRPLRN 206
               V    AK  Q + KE+ P    +H       FR L+ 
Sbjct: 298 AGKQVDIAAAKLIQKLGKERLPEFVKLHFANTEKAFRLLKK 338


>gi|229006884|ref|ZP_04164516.1| Ribonuclease HIII [Bacillus mycoides Rock1-4]
 gi|228754377|gb|EEM03790.1| Ribonuclease HIII [Bacillus mycoides Rock1-4]
          Length = 333

 Score = 82.8 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 94/221 (42%), Gaps = 37/221 (16%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               +AG DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +  E+ +++ +
Sbjct: 114 GTMSIAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLN 173

Query: 78  SAIIS---ISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSIPE 127
               S   + +  +  + +   ++  L A+ H  A+ NL        P   LID  + P+
Sbjct: 174 VVPYSSLVLHNEKYNELFEKGNNQGKLKALLHNKALTNLLKKIAPTKPEGILIDQFTQPD 233

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172
                            +   KG+S+ L++AAASI+A+ +     D L + A    P  G
Sbjct: 234 TYYKYLTKQKEVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 292

Query: 173 FDSHVGYPTAKHQQVI-KEKGPSC--IH----RLTFRPLRN 206
               V    AK  Q + KE+ P    +H       FR L+ 
Sbjct: 293 AGKQVDIAAAKLIQKLGKERLPEFVKLHFANTEKAFRLLKK 333


>gi|293376244|ref|ZP_06622487.1| ribonuclease HIII [Turicibacter sanguinis PC909]
 gi|292645136|gb|EFF63203.1| ribonuclease HIII [Turicibacter sanguinis PC909]
          Length = 308

 Score = 82.8 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 83/195 (42%), Gaps = 31/195 (15%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS----S 78
            G DEVG G   GP+VV    ++ + I F    GI DSK +   +  +L  +I +     
Sbjct: 96  IGCDEVGTGDYFGPIVVCCASVEKDQIAFLQEMGIKDSKALKDPEICQLAHQIETMIPHQ 155

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVE------NLQVIPRSALIDGR--------- 123
            ++  +   +  ++K  ++  ++ A  H         +L  +P   ++D           
Sbjct: 156 CLVLPNEKYNLMVEK-GMNANSIKAYLHNQALLKLTTSLPSLPDFIIMDEFVNEAKYYDY 214

Query: 124 -----SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
                  P  +      + KG+S+ +++AAASI+A+ +  + M+I  KKY  +      G
Sbjct: 215 LKKLPKQPTIISENLHFIQKGESVHVAVAAASILARASFVKYMQIMSKKY-QFELPKGAG 273

Query: 179 YPTA-KHQQVIKEKG 192
            P     ++ +K  G
Sbjct: 274 APVDIAGRKFVKLHG 288


>gi|229087103|ref|ZP_04219253.1| Ribonuclease HIII [Bacillus cereus Rock3-44]
 gi|228696171|gb|EEL49006.1| Ribonuclease HIII [Bacillus cereus Rock3-44]
          Length = 338

 Score = 82.4 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/198 (25%), Positives = 84/198 (42%), Gaps = 30/198 (15%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               +AG DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +  E+ +++ +
Sbjct: 119 GTMSIAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDVQIAEIAKQLLN 178

Query: 78  ----SAIISISSASHQYIDKHNIH-KATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S+++  +   ++  DK N   K        A+ NL        P   LID  + P+
Sbjct: 179 VVPYSSLVLHNEKYNEMFDKGNNQGKLKALLHNKALTNLLKKIAPTKPEGILIDQFTQPD 238

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172
                            +   KG+S+ L++AAASI+A+ +     D L + A    P  G
Sbjct: 239 TYYKYLAKQKEVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 297

Query: 173 FDSHVGYPTAKHQQVIKE 190
               V    AK  Q + +
Sbjct: 298 AGKQVDIAAAKLIQKLGK 315


>gi|65321922|ref|ZP_00394881.1| COG1039: Ribonuclease HIII [Bacillus anthracis str. A2012]
          Length = 337

 Score = 82.4 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 33/197 (16%)

Query: 4   NSIPERPHFELEAMVREKNMWP--------VAGIDEVGRGALAGPVVVAAIILDPNNIP- 54
            ++P+ P   ++  V      P        + G DEVG G   GP+ V A+ +D   IP 
Sbjct: 93  QTVPQTPKIAVKKSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPL 152

Query: 55  ---FGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKH-----NIHKATLDAIYH 106
               G+ DSK ++ ++   + +++      S     ++  ++      N  K        
Sbjct: 153 LKELGVKDSKNLNDEQITAIAKQLLHVVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNK 212

Query: 107 AVENL-----QVIPRSALIDGRSIPEDL-----------PCQAFAVIKGDSISLSIAAAS 150
           A+ NL        P   LID  + P+                 +   KG+S+ L++AAAS
Sbjct: 213 AITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENVYFATKGESVHLAVAAAS 272

Query: 151 IIAKVTRDRLMRIAHKK 167
           I+A+ +  +      KK
Sbjct: 273 ILARYSFVKQFNELSKK 289


>gi|195867864|ref|ZP_03079863.1| ribonuclease HII [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|195660441|gb|EDX53699.1| ribonuclease HII [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
          Length = 317

 Score = 82.0 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 25/177 (14%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREE 70
           E  +  +N   + G DEVG G L G +VV A+ L  +++       I DSKK+S  + +E
Sbjct: 94  EREIY-QNNQIIIGSDEVGVGDLFGGIVVCAVSLKQSDLKFLAHLNIVDSKKLSDHQMQE 152

Query: 71  LYEKITSSAIISISSASHQYIDKH-----NIHKATLDAIYHAVENLQVIPR----SALID 121
           +YEKI +    ++ S + +  ++      N H       Y AV++  V  +     +++D
Sbjct: 153 IYEKIKNQISYTVLSYNPKEYNELINQYNNAHVLKTILHYKAVQSEIVKHQNYSIFSVVD 212

Query: 122 GRSIPEDLPC-----------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
             S  ++                  + K +S   S+A ASIIA+V   +++ I  ++
Sbjct: 213 AFSSLKNWNQYLQKAHLKPYEPNLLIPKAESSYTSVALASIIARVMFLKMIAIIEQE 269


>gi|171920922|ref|ZP_02932071.1| ribonuclease HII [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|185178980|ref|ZP_02964735.1| ribonuclease HII [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188023994|ref|ZP_02996755.1| ribonuclease HII [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188518241|ref|ZP_03003771.1| ribonuclease HII [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188524398|ref|ZP_03004424.1| ribonuclease HII [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|198273849|ref|ZP_03206383.1| ribonuclease HII [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209554110|ref|YP_002284833.1| ribonuclease HIII [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225550434|ref|ZP_03771383.1| ribonuclease HII [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
 gi|225551445|ref|ZP_03772391.1| ribonuclease HII [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|171903150|gb|EDT49439.1| ribonuclease HII [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|184209262|gb|EDU06305.1| ribonuclease HII [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188019019|gb|EDU57059.1| ribonuclease HII [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188998110|gb|EDU67207.1| ribonuclease HII [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195659944|gb|EDX53324.1| ribonuclease HII [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|198249604|gb|EDY74386.1| ribonuclease HII [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209541611|gb|ACI59840.1| ribonuclease HIII [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225379260|gb|EEH01625.1| ribonuclease HII [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|225379588|gb|EEH01950.1| ribonuclease HII [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
          Length = 317

 Score = 82.0 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 25/177 (14%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREE 70
           E  +  +N   + G DEVG G L G +VV A+ L  +++       I DSKK+S  + +E
Sbjct: 94  EREIY-QNNQIIIGSDEVGVGDLFGGIVVCAVSLKQSDLKFLAHLNIVDSKKLSDHQMQE 152

Query: 71  LYEKITSSAIISISSASHQYIDKH-----NIHKATLDAIYHAVENLQVIPR----SALID 121
           +YEKI +    ++ S + +  ++      N H       Y AV++  V  +     +++D
Sbjct: 153 IYEKIKNQISYTVLSYNPKEYNELINQYNNAHVLKTILHYKAVQSEIVKHQNYSIFSVVD 212

Query: 122 GRSIPEDLPC-----------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
             S  ++                  + K +S   S+A ASIIA+V   +++ I  ++
Sbjct: 213 AFSSLKNWNQYLQKAHLKPYEPNLLIPKAESSYTSVALASIIARVMFLKMIAIIEQE 269


>gi|167635636|ref|ZP_02393948.1| ribonuclease HIII [Bacillus anthracis str. A0442]
 gi|170688262|ref|ZP_02879472.1| ribonuclease HIII [Bacillus anthracis str. A0465]
 gi|167529056|gb|EDR91811.1| ribonuclease HIII [Bacillus anthracis str. A0442]
 gi|170667768|gb|EDT18521.1| ribonuclease HIII [Bacillus anthracis str. A0465]
          Length = 332

 Score = 82.0 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 33/197 (16%)

Query: 4   NSIPERPHFELEAMVREKNMWP--------VAGIDEVGRGALAGPVVVAAIILDPNNIP- 54
            ++P+ P   ++  V      P        + G DEVG G   GP+ V A+ +D   IP 
Sbjct: 88  QTVPQTPKIAVKKSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPL 147

Query: 55  ---FGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKH-----NIHKATLDAIYH 106
               G+ DSK ++ ++   + +++      S     ++  ++      N  K        
Sbjct: 148 LKELGVKDSKNLNDEQITAIAKQLLHVVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNK 207

Query: 107 AVENL-----QVIPRSALIDGRSIPEDL-----------PCQAFAVIKGDSISLSIAAAS 150
           A+ NL        P   LID  + P+                 +   KG+S+ L++AAAS
Sbjct: 208 AITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENVYFATKGESVHLAVAAAS 267

Query: 151 IIAKVTRDRLMRIAHKK 167
           I+A+ +  +      KK
Sbjct: 268 ILARYSFVKQFNELSKK 284


>gi|30264624|ref|NP_847001.1| ribonuclease HIII [Bacillus anthracis str. Ames]
 gi|47530095|ref|YP_021444.1| ribonuclease HIII [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187446|ref|YP_030698.1| ribonuclease HIII [Bacillus anthracis str. Sterne]
 gi|165871447|ref|ZP_02216094.1| ribonuclease HIII [Bacillus anthracis str. A0488]
 gi|167641557|ref|ZP_02399804.1| ribonuclease HIII [Bacillus anthracis str. A0193]
 gi|170708703|ref|ZP_02899141.1| ribonuclease HIII [Bacillus anthracis str. A0389]
 gi|177653122|ref|ZP_02935409.1| ribonuclease HIII [Bacillus anthracis str. A0174]
 gi|190566898|ref|ZP_03019814.1| ribonuclease HIII [Bacillus anthracis Tsiankovskii-I]
 gi|227817338|ref|YP_002817347.1| ribonuclease HIII [Bacillus anthracis str. CDC 684]
 gi|229601632|ref|YP_002868834.1| ribonuclease HIII [Bacillus anthracis str. A0248]
 gi|254686953|ref|ZP_05150811.1| ribonuclease HIII [Bacillus anthracis str. CNEVA-9066]
 gi|254724517|ref|ZP_05186300.1| ribonuclease HIII [Bacillus anthracis str. A1055]
 gi|254736662|ref|ZP_05194368.1| ribonuclease HIII [Bacillus anthracis str. Western North America
           USA6153]
 gi|254741700|ref|ZP_05199387.1| ribonuclease HIII [Bacillus anthracis str. Kruger B]
 gi|254754703|ref|ZP_05206738.1| ribonuclease HIII [Bacillus anthracis str. Vollum]
 gi|254757535|ref|ZP_05209562.1| ribonuclease HIII [Bacillus anthracis str. Australia 94]
 gi|73917840|sp|Q81L36|RNH3_BACAN RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|254808009|sp|C3PAE4|RNH3_BACAA RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|254808010|sp|C3L8T2|RNH3_BACAC RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|30259282|gb|AAP28487.1| ribonuclease HIII [Bacillus anthracis str. Ames]
 gi|47505243|gb|AAT33919.1| ribonuclease HIII [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181373|gb|AAT56749.1| ribonuclease HIII [Bacillus anthracis str. Sterne]
 gi|164712744|gb|EDR18274.1| ribonuclease HIII [Bacillus anthracis str. A0488]
 gi|167510442|gb|EDR85841.1| ribonuclease HIII [Bacillus anthracis str. A0193]
 gi|170126383|gb|EDS95272.1| ribonuclease HIII [Bacillus anthracis str. A0389]
 gi|172081646|gb|EDT66717.1| ribonuclease HIII [Bacillus anthracis str. A0174]
 gi|190561889|gb|EDV15858.1| ribonuclease HIII [Bacillus anthracis Tsiankovskii-I]
 gi|227005114|gb|ACP14857.1| ribonuclease HIII [Bacillus anthracis str. CDC 684]
 gi|229266040|gb|ACQ47677.1| ribonuclease HIII [Bacillus anthracis str. A0248]
          Length = 311

 Score = 82.0 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 33/197 (16%)

Query: 4   NSIPERPHFELEAMVREKNMWP--------VAGIDEVGRGALAGPVVVAAIILDPNNIP- 54
            ++P+ P   ++  V      P        + G DEVG G   GP+ V A+ +D   IP 
Sbjct: 67  QTVPQTPKIAVKKSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPL 126

Query: 55  ---FGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKH-----NIHKATLDAIYH 106
               G+ DSK ++ ++   + +++      S     ++  ++      N  K        
Sbjct: 127 LKELGVKDSKNLNDEQITAIAKQLLHVVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNK 186

Query: 107 AVENL-----QVIPRSALIDGRSIPEDL-----------PCQAFAVIKGDSISLSIAAAS 150
           A+ NL        P   LID  + P+                 +   KG+S+ L++AAAS
Sbjct: 187 AITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENVYFATKGESVHLAVAAAS 246

Query: 151 IIAKVTRDRLMRIAHKK 167
           I+A+ +  +      KK
Sbjct: 247 ILARYSFVKQFNELSKK 263


>gi|229135388|ref|ZP_04264177.1| Ribonuclease HIII [Bacillus cereus BDRD-ST196]
 gi|228648084|gb|EEL04130.1| Ribonuclease HIII [Bacillus cereus BDRD-ST196]
          Length = 311

 Score = 81.6 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 30/194 (15%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +  E+ +++  
Sbjct: 93  GTMSILGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLH 152

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLTKIAPTKPEGILIDQFTQPD 212

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172
                            +   KG+S+ L++AAASI+A+ +     D L + A  + P  G
Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMQLPK-G 271

Query: 173 FDSHVGYPTAKHQQ 186
               V    AK  Q
Sbjct: 272 AGKQVDIAAAKLIQ 285


>gi|163942287|ref|YP_001647171.1| ribonuclease HIII [Bacillus weihenstephanensis KBAB4]
 gi|226741380|sp|A9VJL6|RNH3_BACWK RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|163864484|gb|ABY45543.1| ribonuclease HIII [Bacillus weihenstephanensis KBAB4]
          Length = 312

 Score = 81.3 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 30/194 (15%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +  E+ +++  
Sbjct: 93  GTMSILGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLH 152

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTKPEGILIDQFTQPD 212

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172
                            +   KG+S+ L++AAASI+A+ +     D L + A  + P  G
Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMQLPK-G 271

Query: 173 FDSHVGYPTAKHQQ 186
               V    AK  Q
Sbjct: 272 AGKQVDIAAAKLIQ 285


>gi|311069353|ref|YP_003974276.1| ribonuclease HIII [Bacillus atrophaeus 1942]
 gi|310869870|gb|ADP33345.1| ribonuclease HIII [Bacillus atrophaeus 1942]
          Length = 313

 Score = 81.3 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 55/212 (25%), Positives = 89/212 (41%), Gaps = 34/212 (16%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
            M  V G DEVG G   GP+ VA   +D + +      G+ DSK +   +  E+ + +  
Sbjct: 93  GMMSVIGSDEVGTGDYFGPMTVACAYVDKSKLALMKELGVKDSKHLKDPQIIEIAKSLIK 152

Query: 78  SAIISISSASHQYIDKHNIHKATL-----DAIYHAVENL-----QVIPRSALIDGRSIP- 126
           +   S+   +++  +K      +           A+ +L      + P + LID  + P 
Sbjct: 153 TIPYSLLILNNEKYNKLQEKGMSQGKMKALLHNQAIGHLLKKMDGIKPEAILIDQFAEPS 212

Query: 127 ---------EDLPCQAFAVIKGDSISLSIAAASIIAKVTR----DRLMRIAHKKYPDYGF 173
                    + +  + +   K + I LS+AAASIIA+ +     D+L R A    P  G 
Sbjct: 213 IYFKHLAGKDIVKERTYFSTKAEGIHLSVAAASIIARYSFLMEMDKLSREAGMVIPK-GA 271

Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
             HV    AK   +I +KG S +   TF  L 
Sbjct: 272 GPHVDEACAK---LILKKGESAL--RTFTKLH 298


>gi|229140480|ref|ZP_04269035.1| Ribonuclease HII [Bacillus cereus BDRD-ST26]
 gi|228643041|gb|EEK99317.1| Ribonuclease HII [Bacillus cereus BDRD-ST26]
          Length = 106

 Score = 81.3 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 31/45 (68%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN 58
            E  +REK +  +AGIDEVGRG LAGPVV AA++L  + +  G+ 
Sbjct: 62  YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPKDFLYSGVK 106


>gi|259047147|ref|ZP_05737548.1| ribonuclease HIII [Granulicatella adiacens ATCC 49175]
 gi|259036197|gb|EEW37452.1| ribonuclease HIII [Granulicatella adiacens ATCC 49175]
          Length = 270

 Score = 80.9 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 25/179 (13%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA 79
           W V G DEVG GA  GP+ VA+  +   NIP     G+ DSK ++ ++      KI    
Sbjct: 56  WSVMGSDEVGNGAYFGPLTVASAYVSKENIPLLKKMGVKDSKDLTDEQIRAFVPKIKEVI 115

Query: 80  IISISSASHQYIDK----HNIHKATLDAIYHAVENLQVI-----PRSALIDGRSIPEDL- 129
              + +   +  ++     N+++        A+  L        P   LID    PE   
Sbjct: 116 PYKLLTLWPEKYNEVQQVKNLNEMKALLHNQALRLLSEKIMPESPEGFLIDQFCKPELYY 175

Query: 130 ----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
                       + + + KG+S  +++AAAS+IA+      +     ++  Y   S  G
Sbjct: 176 RYLKGQPLVDKNKTYFITKGESHHIAVAAASMIARCAFLDGLDSLSTEF-GYKLPSGAG 233


>gi|325845139|ref|ZP_08168448.1| ribonuclease HIII [Turicibacter sp. HGF1]
 gi|325488804|gb|EGC91204.1| ribonuclease HIII [Turicibacter sp. HGF1]
          Length = 308

 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 92/219 (42%), Gaps = 32/219 (14%)

Query: 4   NSIPERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GIN 58
           ++ P++     ++ +     M    G DEVG G   GP+VV    ++ + I F    GI 
Sbjct: 72  STTPKKSTLNKKSTLPSNIAMLSAIGCDEVGTGDYFGPIVVCCASVEKDQIAFLQEMGIK 131

Query: 59  DSKKISHKKREELYEKITS----SAIISISSASHQYIDKHNIHKATLDAIYHAVE----- 109
           DSK +   +  +L  +I +      ++  +   +  ++K  ++  ++ A  H        
Sbjct: 132 DSKALKDLEICQLAHQIETMIPHQCLVLPNEKYNLMVEK-GMNANSIKAYLHNQALLKLT 190

Query: 110 -NLQVIPRSALIDGR--------------SIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
            +L  +P   ++D                  P  +      + KG+S+ +++AAASI+A+
Sbjct: 191 TSLPSLPDFIIMDEFVNEAKYYDYLKKLPKQPTIVSENLHFIQKGESVHVAVAAASILAR 250

Query: 155 VTRDRLMRIAHKKYPDYGFDSHVGYPTA-KHQQVIKEKG 192
            +  + M+I  KKY  +      G P     ++ +K  G
Sbjct: 251 ASFVKYMQIMSKKY-QFELPKGAGAPVDIAGRKFVKLHG 288


>gi|218232445|ref|YP_002369353.1| ribonuclease HIII [Bacillus cereus B4264]
 gi|218160402|gb|ACK60394.1| ribonuclease HIII [Bacillus cereus B4264]
          Length = 337

 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 30/198 (15%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++ ++   + +++  
Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 178

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 238

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172
                            +   KG+S+ L++AAASI+A+ +     D L + A    P  G
Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 297

Query: 173 FDSHVGYPTAKHQQVIKE 190
               V    AK  Q + +
Sbjct: 298 AGKQVDIAAAKLIQKLGK 315


>gi|171920172|ref|ZP_02931561.1| ribonuclease HIII [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|186701730|ref|ZP_02971421.1| ribonuclease HIII [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|171902547|gb|EDT48836.1| ribonuclease HIII [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|186700997|gb|EDU19279.1| ribonuclease HIII [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 316

 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 24/169 (14%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79
             + G DEVG G L G +VV A+ L  ++        I DSKK++ ++ +E+Y++I +  
Sbjct: 101 QVIIGSDEVGVGDLFGGIVVCAVSLKKSDFKKINHLKIIDSKKLNDQQMQEIYQQIKNQI 160

Query: 80  IISISSASHQY----IDKHNIHKATLDAIYHAVENLQVIPRSAL-----IDGRSIPEDLP 130
             +I S + +     I ++N        +++     ++   +       +D  S  ++  
Sbjct: 161 SYTIVSYNPKEYNELIKEYNNAHILKTILHYKALQSEIHKHAKYSIFSVVDAFSSLKNWN 220

Query: 131 C-----------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
                           + K +SI  S+A ASIIA+V   +++ I  +++
Sbjct: 221 QYLQKVNFQPYEPNLLIPKAESIYTSVALASIIARVMFLKMIAIIEEQF 269


>gi|13357958|ref|NP_078232.1| ribonuclease HII [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170761950|ref|YP_001752480.1| ribonuclease HIII [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|183508540|ref|ZP_02958062.1| ribonuclease HIII [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|11387109|sp|Q9PQ93|RNH3_UREPA RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|189043679|sp|B1AJ36|RNH3_UREP2 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|11357021|pir||C82896 ribonuclease HII UU397 [imported] - Ureaplasma urealyticum
 gi|6899383|gb|AAF30807.1|AE002137_6 ribonuclease HII [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827527|gb|ACA32789.1| ribonuclease HIII [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|182675978|gb|EDT87883.1| ribonuclease HIII [Ureaplasma parvum serovar 14 str. ATCC 33697]
          Length = 316

 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 24/169 (14%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79
             + G DEVG G L G +VV A+ L  ++        I DSKK++ ++ +E+Y++I +  
Sbjct: 101 QVIIGSDEVGVGDLFGGIVVCAVSLKKSDFKKINHLKIIDSKKLNDQQMQEIYQQIKNQI 160

Query: 80  IISISSASHQY----IDKHNIHKATLDAIYHAVENLQVIPRSAL-----IDGRSIPEDLP 130
             +I S + +     I ++N        +++     ++   +       +D  S  ++  
Sbjct: 161 SYTIVSYNPKEYNELIKEYNNAHILKTILHYKALQSEIHKHAKYSIFSVVDAFSSLKNWN 220

Query: 131 C-----------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
                           + K +SI  S+A ASIIA+V   +++ I  +++
Sbjct: 221 QYLQKVNFQPYEPNLLIPKAESIYTSVALASIIARVMFLKMIAIIEEQF 269


>gi|229099014|ref|ZP_04229949.1| Ribonuclease HIII [Bacillus cereus Rock3-29]
 gi|228684512|gb|EEL38455.1| Ribonuclease HIII [Bacillus cereus Rock3-29]
          Length = 295

 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 30/194 (15%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               +AG DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++  
Sbjct: 77  GTMSIAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQITAIAKQLLH 136

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 137 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTTPEGILIDQFTQPD 196

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172
                            +   KG+S+ L++AAASI+A+ +     D L + A    P  G
Sbjct: 197 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMLLPK-G 255

Query: 173 FDSHVGYPTAKHQQ 186
               V    AK  Q
Sbjct: 256 AGKQVDIAAAKLIQ 269


>gi|228987805|ref|ZP_04147914.1| Ribonuclease HIII [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228771853|gb|EEM20310.1| Ribonuclease HIII [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 337

 Score = 80.5 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 30/198 (15%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++  
Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 178

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 238

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172
                            +   KG+S+ L++AAASI+A+ +     D L + A    P  G
Sbjct: 239 TYYKYLAKQKLVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 297

Query: 173 FDSHVGYPTAKHQQVIKE 190
               V    AK  Q + +
Sbjct: 298 AGKQVDIAAAKLIQKLGK 315


>gi|42783728|ref|NP_980975.1| ribonuclease HIII [Bacillus cereus ATCC 10987]
 gi|73917841|sp|Q72ZI6|RNH3_BACC1 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|42739658|gb|AAS43583.1| ribonuclease HIII [Bacillus cereus ATCC 10987]
          Length = 311

 Score = 80.5 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 30/198 (15%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++ ++   + +++  
Sbjct: 93  GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 152

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPD 212

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172
                            +   KG+S+ L++AAASI+A+ +     D L + A    P  G
Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 271

Query: 173 FDSHVGYPTAKHQQVIKE 190
               V    AK  Q + +
Sbjct: 272 AGKQVDIAAAKLIQKLGK 289


>gi|229013757|ref|ZP_04170885.1| Ribonuclease HIII [Bacillus mycoides DSM 2048]
 gi|228747426|gb|EEL97301.1| Ribonuclease HIII [Bacillus mycoides DSM 2048]
          Length = 312

 Score = 80.5 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 30/194 (15%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +  E+ +++  
Sbjct: 93  GTMSILGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLH 152

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTTPEGILIDQFTQPD 212

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172
                            +   KG+S+ L++AAASI+A+ +     D L + A  + P  G
Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKKFDELSKKAGMQLPK-G 271

Query: 173 FDSHVGYPTAKHQQ 186
               V    AK  Q
Sbjct: 272 AGKQVDIAAAKLIQ 285


>gi|257867416|ref|ZP_05647069.1| ribonuclease HIII [Enterococcus casseliflavus EC30]
 gi|257873746|ref|ZP_05653399.1| ribonuclease HIII [Enterococcus casseliflavus EC10]
 gi|257877497|ref|ZP_05657150.1| ribonuclease HIII [Enterococcus casseliflavus EC20]
 gi|257801472|gb|EEV30402.1| ribonuclease HIII [Enterococcus casseliflavus EC30]
 gi|257807910|gb|EEV36732.1| ribonuclease HIII [Enterococcus casseliflavus EC10]
 gi|257811663|gb|EEV40483.1| ribonuclease HIII [Enterococcus casseliflavus EC20]
          Length = 308

 Score = 80.5 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 76/191 (39%), Gaps = 26/191 (13%)

Query: 3   CNSIPERPHFELEAMVREKNM--WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FG 56
            +++P++    + +           V G DEVG G+  GP+VV A+      +P     G
Sbjct: 69  ASAVPDKKKATVSSTALPAGFSEKSVVGSDEVGNGSYFGPLVVCAVYAKKEQLPQLKALG 128

Query: 57  INDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDA----IYHAVENL- 111
           + DSK ++  +  ++  KI       + + +    ++      T+         A+  L 
Sbjct: 129 VKDSKMLTDPEIRKMAPKIKELVPYQLLTVTPSKYNEIQPKYNTVRMKVALHNQAIRLLL 188

Query: 112 ----QVIPRSALIDGRSIPED----LPCQAFAV-------IKGDSISLSIAAASIIAKVT 156
                  P + LID  +  ++    L  +  AV        KG+   L++AAASI+ +  
Sbjct: 189 QKIAPETPDAILIDQFTSEKNYRTYLKSEQVAVTEKLYFATKGEQYHLAVAAASILCRTV 248

Query: 157 RDRLMRIAHKK 167
               +  A K+
Sbjct: 249 FLDELDAASKE 259


>gi|301056063|ref|YP_003794274.1| ribonuclease HIII [Bacillus anthracis CI]
 gi|300378232|gb|ADK07136.1| ribonuclease HIII [Bacillus cereus biovar anthracis str. CI]
          Length = 311

 Score = 80.5 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 25/171 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++ ++   + +++  
Sbjct: 93  GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 152

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPDGVLIDQFTQPD 212

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                            +   KG+S+ L++AAASI+A+ +  +      KK
Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 263


>gi|229141283|ref|ZP_04269821.1| Ribonuclease HIII [Bacillus cereus BDRD-ST26]
 gi|229198705|ref|ZP_04325404.1| Ribonuclease HIII [Bacillus cereus m1293]
 gi|228584781|gb|EEK42900.1| Ribonuclease HIII [Bacillus cereus m1293]
 gi|228642064|gb|EEK98357.1| Ribonuclease HIII [Bacillus cereus BDRD-ST26]
          Length = 332

 Score = 80.5 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 25/171 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++ ++   + +++  
Sbjct: 114 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 173

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL      + P   LID  + P+
Sbjct: 174 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPIKPEGVLIDQFTQPD 233

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                            +   KG+S+ L++AAASI+A+ +  +      KK
Sbjct: 234 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 284


>gi|229169283|ref|ZP_04296994.1| Ribonuclease HIII [Bacillus cereus AH621]
 gi|228614178|gb|EEK71292.1| Ribonuclease HIII [Bacillus cereus AH621]
          Length = 295

 Score = 80.5 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 30/194 (15%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +  E+ +++  
Sbjct: 77  GTMSILGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLH 136

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 137 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTKPEGILIDQFTQPD 196

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172
                            +   KG+S+ L++AAASI+A+ +     D L + A  + P  G
Sbjct: 197 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMQLPK-G 255

Query: 173 FDSHVGYPTAKHQQ 186
               V    AK  Q
Sbjct: 256 AGKQVDIAAAKLIQ 269


>gi|229158161|ref|ZP_04286229.1| Ribonuclease HIII [Bacillus cereus ATCC 4342]
 gi|228625323|gb|EEK82082.1| Ribonuclease HIII [Bacillus cereus ATCC 4342]
          Length = 337

 Score = 80.5 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 30/198 (15%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++  
Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 178

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 238

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172
                            +   KG+S+ L++AAASI+A+ +     D L + A    P  G
Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 297

Query: 173 FDSHVGYPTAKHQQVIKE 190
               V    AK  Q + +
Sbjct: 298 AGKQVDIAAAKLIQKLGK 315


>gi|206977745|ref|ZP_03238636.1| ribonuclease HIII [Bacillus cereus H3081.97]
 gi|217962037|ref|YP_002340607.1| ribonuclease HIII [Bacillus cereus AH187]
 gi|226736827|sp|B7HRJ7|RNH3_BACC7 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|206744046|gb|EDZ55462.1| ribonuclease HIII [Bacillus cereus H3081.97]
 gi|217067519|gb|ACJ81769.1| ribonuclease HIII [Bacillus cereus AH187]
          Length = 311

 Score = 80.5 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 25/171 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++ ++   + +++  
Sbjct: 93  GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 152

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL      + P   LID  + P+
Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPIKPEGVLIDQFTQPD 212

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                            +   KG+S+ L++AAASI+A+ +  +      KK
Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 263


>gi|229129840|ref|ZP_04258806.1| Ribonuclease HIII [Bacillus cereus BDRD-Cer4]
 gi|228653531|gb|EEL09403.1| Ribonuclease HIII [Bacillus cereus BDRD-Cer4]
          Length = 337

 Score = 80.5 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 30/198 (15%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++  
Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 178

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 238

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172
                            +   KG+S+ L++AAASI+A+ +     D L + A    P  G
Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 297

Query: 173 FDSHVGYPTAKHQQVIKE 190
               V    AK  Q + +
Sbjct: 298 AGKQVDIAAAKLIQKLGK 315


>gi|227431089|ref|ZP_03913147.1| ribonuclease HIII [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227353129|gb|EEJ43297.1| ribonuclease HIII [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 303

 Score = 80.5 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 26/168 (15%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
           W V G DEVG GA  GP+  AA+ +   N+      GI DSK ++  + +++  +I +  
Sbjct: 89  WSVLGSDEVGAGAYFGPLTTAAVYVSQENLEWVRALGIADSKTLTDDRMKKIAPQIIAQL 148

Query: 80  IISISSASHQYIDKHNIHKAT--LDAIYHAVE-------NLQVIPRSALIDGRSIPEDL- 129
              + +   +  ++         + AI H             + P++ LID  +      
Sbjct: 149 PHHVVNLMPEKYNQLQPLHNVNQMKAISHNFALGKVLDKIFPITPQAILIDQFAQQSTYF 208

Query: 130 ----PCQAFAVI--------KGDSISLSIAAASIIAKVTRDRLMRIAH 165
                 +   +I        KG+   LS+AAASI+A+V     M    
Sbjct: 209 NYLKNAKQQRIIHENVYFTTKGEQYHLSVAAASILARVVELDAMSKLS 256


>gi|229048264|ref|ZP_04193832.1| Ribonuclease HIII [Bacillus cereus AH676]
 gi|229147115|ref|ZP_04275474.1| Ribonuclease HIII [Bacillus cereus BDRD-ST24]
 gi|228636364|gb|EEK92835.1| Ribonuclease HIII [Bacillus cereus BDRD-ST24]
 gi|228722989|gb|EEL74366.1| Ribonuclease HIII [Bacillus cereus AH676]
          Length = 337

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 30/198 (15%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++  
Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 178

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 238

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172
                            +   KG+S+ L++AAASI+A+ +     D L + A    P  G
Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 297

Query: 173 FDSHVGYPTAKHQQVIKE 190
               V    AK  Q + +
Sbjct: 298 AGKQVDIAAAKLIQKLGK 315


>gi|229112020|ref|ZP_04241563.1| Ribonuclease HIII [Bacillus cereus Rock1-15]
 gi|228671343|gb|EEL26644.1| Ribonuclease HIII [Bacillus cereus Rock1-15]
          Length = 337

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 30/198 (15%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++  
Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 178

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 238

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172
                            +   KG+S+ L++AAASI+A+ +     D L + A    P  G
Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 297

Query: 173 FDSHVGYPTAKHQQVIKE 190
               V    AK  Q + +
Sbjct: 298 AGKQVDIAAAKLIQKLGK 315


>gi|229118045|ref|ZP_04247405.1| Ribonuclease HIII [Bacillus cereus Rock1-3]
 gi|228665494|gb|EEL20976.1| Ribonuclease HIII [Bacillus cereus Rock1-3]
          Length = 295

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 30/194 (15%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               +AG DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++  
Sbjct: 77  GTMSIAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQITAIAKQLLH 136

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 137 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTTPEGILIDQFTQPD 196

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172
                            +   KG+S+ L++AAASI+A+ +     D L + A    P  G
Sbjct: 197 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMLLPK-G 255

Query: 173 FDSHVGYPTAKHQQ 186
               V    AK  Q
Sbjct: 256 AGKQVDIAAAKLIQ 269


>gi|229163546|ref|ZP_04291496.1| Ribonuclease HIII [Bacillus cereus R309803]
 gi|228619928|gb|EEK76804.1| Ribonuclease HIII [Bacillus cereus R309803]
          Length = 332

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 30/198 (15%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++  
Sbjct: 114 GTMSIVGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 173

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 174 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 233

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172
                            +   KG+S+ L++AAASI+A+ +     D L + A    P  G
Sbjct: 234 TYYKYLAKQKEVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 292

Query: 173 FDSHVGYPTAKHQQVIKE 190
               V    AK  Q + +
Sbjct: 293 AGKQVDIAAAKLIQKLGK 310


>gi|30022631|ref|NP_834262.1| ribonuclease HIII [Bacillus cereus ATCC 14579]
 gi|73917842|sp|Q817J0|RNH3_BACCR RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|29898189|gb|AAP11463.1| Ribonuclease HII [Bacillus cereus ATCC 14579]
          Length = 311

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 30/198 (15%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++  
Sbjct: 93  GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 152

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 212

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172
                            +   KG+S+ L++AAASI+A+ +     D L + A    P  G
Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 271

Query: 173 FDSHVGYPTAKHQQVIKE 190
               V    AK  Q + +
Sbjct: 272 AGKQVDIAAAKLIQKLGK 289


>gi|309778053|ref|ZP_07672993.1| ribonuclease HIII [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914190|gb|EFP59990.1| ribonuclease HIII [Erysipelotrichaceae bacterium 3_1_53]
          Length = 299

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 72/198 (36%), Gaps = 25/198 (12%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKI 63
           E+           K ++P AG DEVG G   GPV V A  +   ++ F    GI DSK I
Sbjct: 73  EKKTAGRSRPAYSKEIYPQAGSDEVGTGDYFGPVTVCATYVTAQDVEFLREQGIQDSKAI 132

Query: 64  SHKKREELYEKITS---SAIISISSASHQYIDKHNIHKATL-----DAIYHAVENLQVIP 115
                  +  K+      +++ + +A++  I   N   A        A  H  + L  +P
Sbjct: 133 DDTAIRRMAPKLIERLPHSLLILDNATYNRIHGENNMVAIKSRMHNQAYVHLRKKLGALP 192

Query: 116 RSALIDGR----------SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165
              +ID                D+        K ++  LS+AA SIIA+      ++   
Sbjct: 193 EFCIIDQFVQKSSYYRYLQKERDVVYDIHFETKAENKYLSVAAGSIIARYA---FLKSFD 249

Query: 166 KKYPDYGFDSHVGYPTAK 183
                Y F    G  +  
Sbjct: 250 AMCERYDFTFLKGAGSKV 267


>gi|228960825|ref|ZP_04122460.1| Ribonuclease HIII [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228798847|gb|EEM45826.1| Ribonuclease HIII [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 332

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 30/198 (15%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++  
Sbjct: 114 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 173

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 174 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 233

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172
                            +   KG+S+ L++AAASI+A+ +     D L + A    P  G
Sbjct: 234 TYYKYLAKQKQVQRENVYFTTKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 292

Query: 173 FDSHVGYPTAKHQQVIKE 190
               V    AK  Q + +
Sbjct: 293 AGKQVDIAAAKLIQKLGK 310


>gi|228935866|ref|ZP_04098676.1| Ribonuclease HIII [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228823634|gb|EEM69456.1| Ribonuclease HIII [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 337

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 25/171 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++ ++   + +++  
Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 178

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLTKIAPTKPEGVLIDQFTQPD 238

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                            +   KG+S+ L++AAASI+A+ +  +      KK
Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 289


>gi|229032202|ref|ZP_04188175.1| Ribonuclease HIII [Bacillus cereus AH1271]
 gi|228728982|gb|EEL79985.1| Ribonuclease HIII [Bacillus cereus AH1271]
          Length = 337

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 77/198 (38%), Gaps = 30/198 (15%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++  
Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKKIPLLKELGVKDSKNLNDDQITAIAKQLLH 178

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPD 238

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172
                            +   KG+S+ L++AAASI+A+ +     D L + A    P  G
Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 297

Query: 173 FDSHVGYPTAKHQQVIKE 190
               V    AK  Q + E
Sbjct: 298 AGKQVDIAAAKLIQKLGE 315


>gi|145640736|ref|ZP_01796319.1| ribonuclease HII [Haemophilus influenzae R3021]
 gi|145274662|gb|EDK14525.1| ribonuclease HII [Haemophilus influenzae 22.4-21]
          Length = 56

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/47 (53%), Positives = 30/47 (63%)

Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67
          +    +AG+DEVGRG L G VV AA+ILDPNN   G+ DSK    K 
Sbjct: 6  QGYELIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKNFLRKT 52


>gi|229192756|ref|ZP_04319714.1| Ribonuclease HIII [Bacillus cereus ATCC 10876]
 gi|228590595|gb|EEK48456.1| Ribonuclease HIII [Bacillus cereus ATCC 10876]
          Length = 332

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 78/196 (39%), Gaps = 30/196 (15%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
             + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++    
Sbjct: 116 MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVV 175

Query: 80  IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129
             S     ++  ++      N  K        A+ NL        P   LID  + P+  
Sbjct: 176 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTY 235

Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174
                          +   KG+S+ L++AAASI+A+ +     D L++ A    P  G  
Sbjct: 236 YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELIKKAGMPLPK-GAG 294

Query: 175 SHVGYPTAKHQQVIKE 190
             V    AK  Q + +
Sbjct: 295 KQVDIAAAKLIQKLGK 310


>gi|228948280|ref|ZP_04110563.1| Ribonuclease HIII [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228811267|gb|EEM57605.1| Ribonuclease HIII [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 332

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 25/171 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++ ++   + +++  
Sbjct: 114 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 173

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 174 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLTKIAPTKPEGVLIDQFTQPD 233

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                            +   KG+S+ L++AAASI+A+ +  +      KK
Sbjct: 234 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 284


>gi|118479705|ref|YP_896856.1| ribonuclease HIII [Bacillus thuringiensis str. Al Hakam]
 gi|196044948|ref|ZP_03112182.1| ribonuclease HIII [Bacillus cereus 03BB108]
 gi|229186809|ref|ZP_04313964.1| Ribonuclease HIII [Bacillus cereus BGSC 6E1]
 gi|118418930|gb|ABK87349.1| ribonuclease HII [Bacillus thuringiensis str. Al Hakam]
 gi|196024436|gb|EDX63109.1| ribonuclease HIII [Bacillus cereus 03BB108]
 gi|228596546|gb|EEK54211.1| Ribonuclease HIII [Bacillus cereus BGSC 6E1]
          Length = 337

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 25/171 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++ ++   + +++  
Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 178

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 238

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                            +   KG+S+ L++AAASI+A+ +  +      KK
Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 289


>gi|229152752|ref|ZP_04280936.1| Ribonuclease HIII [Bacillus cereus m1550]
 gi|228630730|gb|EEK87375.1| Ribonuclease HIII [Bacillus cereus m1550]
          Length = 337

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 25/171 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++  
Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 178

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 238

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                            +   KG+S+ L++AAASI+A+ +  +      KK
Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKK 289


>gi|229105182|ref|ZP_04235831.1| Ribonuclease HIII [Bacillus cereus Rock3-28]
 gi|228678108|gb|EEL32336.1| Ribonuclease HIII [Bacillus cereus Rock3-28]
          Length = 295

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 25/171 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               +AG DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++  
Sbjct: 77  GTMSIAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQITAIAKQLLH 136

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 137 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTTPEGILIDQFTQPD 196

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                            +   KG+S+ L++AAASI+A+ +  +      KK
Sbjct: 197 TYYKYLTKQKQVQREHVYFATKGESVHLAVAAASILARYSFVKQFDELSKK 247


>gi|49478678|ref|YP_038604.1| ribonuclease HIII [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|73917843|sp|Q6HCX2|RNH3_BACHK RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|49330234|gb|AAT60880.1| ribonuclease HII [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 311

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 25/171 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++ ++   + +++  
Sbjct: 93  GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 152

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLTKIAPTKPEGVLIDQFTQPD 212

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                            +   KG+S+ L++AAASI+A+ +  +      KK
Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 263


>gi|189219365|ref|YP_001940006.1| ribonuclease HIII [Methylacidiphilum infernorum V4]
 gi|189186223|gb|ACD83408.1| Ribonuclease HIII [Methylacidiphilum infernorum V4]
          Length = 323

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 91/233 (39%), Gaps = 43/233 (18%)

Query: 9   RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKIS 64
           +     E ++  +     AGIDE G+G L GP+VVAA+ +D  +    +  GI DSK+I 
Sbjct: 94  KASIGYEEVLHPEYFEAHAGIDECGKGDLFGPLVVAAVFVDKQSARFLVDAGIKDSKRIK 153

Query: 65  HKKRE-ELYEKITSSAIISISSASHQYID----KHNIHKATLDAIYHA-----VENLQVI 114
              R  +L  ++   A     S S    +    K   +   L A  HA     +  +Q  
Sbjct: 154 SDSRLFQLAMEVKKKAPYGFFSLSPLQYNDLYEKKFKNLNLLLAWAHAKAYQRLLQVQSD 213

Query: 115 PRSALIDGRSIPEDLPCQAFAV---------IKGDSISLSIAAASIIAKVTRDRLMRIAH 165
               + D  + P  L      +          K +S   ++AAASI+A   R   +    
Sbjct: 214 CHRVVCDRFAHPWVLKQSFEKIGMQDALEQMTKAES-DPAVAAASILA---RAVFLEELS 269

Query: 166 KKYPDYGFDSHVGYPTA-----------KHQQVIKEKGPSCIHRLTFRPLRNL 207
           K   + GF    G  +            K ++ +++   + +H   F+ ++ +
Sbjct: 270 KLGKEIGFSLLRGASSKTVEQAREIYLNKGKEALRK--VAKMH---FKTIQKI 317


>gi|52140950|ref|YP_085879.1| ribonuclease HIII [Bacillus cereus E33L]
 gi|81685974|sp|Q633N8|RNH3_BACCZ RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|51974419|gb|AAU15969.1| ribonuclease HII [Bacillus cereus E33L]
          Length = 311

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 25/171 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++ ++   + +++  
Sbjct: 93  GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 152

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKLAPTKPEGVLIDQFTQPD 212

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                            +   KG+S+ L++AAASI+A+ +  +      KK
Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 263


>gi|296505031|ref|YP_003666731.1| ribonuclease HIII [Bacillus thuringiensis BMB171]
 gi|296326083|gb|ADH09011.1| ribonuclease HIII [Bacillus thuringiensis BMB171]
          Length = 311

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 25/171 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++ ++   + +++  
Sbjct: 93  GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 152

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 212

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                            +   KG+S+ L++AAASI+A+ +  +      KK
Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 263


>gi|225866529|ref|YP_002751907.1| ribonuclease HIII [Bacillus cereus 03BB102]
 gi|254808011|sp|C1ETZ4|RNH3_BACC3 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|225790928|gb|ACO31145.1| ribonuclease HIII [Bacillus cereus 03BB102]
          Length = 311

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 25/171 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++ ++   + +++  
Sbjct: 93  GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 152

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 212

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                            +   KG+S+ L++AAASI+A+ +  +      KK
Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 263


>gi|327439303|dbj|BAK15668.1| ribonuclease HIII [Solibacillus silvestris StLB046]
          Length = 309

 Score = 79.3 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 66/171 (38%), Gaps = 27/171 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           V G DE G G   GPV VAA+ +  + I      G+ DSK+++     ++   +      
Sbjct: 92  VLGSDETGTGDYFGPVTVAAVYVPADKISLVQELGVKDSKQLTDDYMRQIAPDLMKVCAY 151

Query: 82  SISSASHQYIDKHNIH-----KATLDAIYHAVENL-----QVIPRSALID--------GR 123
           SI +  +   ++         K        A++++        P+  LID          
Sbjct: 152 SILTLRNDKYNEIQARGYSQGKIKALLHNQALKHVLTKIAPETPQYILIDQFAERGIYYN 211

Query: 124 SIPEDLPCQAFAV---IKGDSISLSIAAASIIAKVTRDRLMRIAHKK--YP 169
            I  +       V    K +++ +++A ASI+A+    + M    K   YP
Sbjct: 212 HIKNEKEIVRQNVLFSTKAENLHVAVATASILARYAFLKEMDRLAKVTGYP 262


>gi|323464759|gb|ADX76912.1| ribonuclease HIII [Staphylococcus pseudintermedius ED99]
          Length = 312

 Score = 79.3 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 36/196 (18%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---SA 79
            G DE G G   GP+ V A  +   +IP     G++DSK+++ KK   L E++ +    +
Sbjct: 97  IGSDEAGSGDYFGPLTVCACYVSAQHIPILKELGVDDSKRLTDKKIVALAEQLVTFLPHS 156

Query: 80  IISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSIPEDLPCQ 132
           ++ + +  +    +    +  + A+ H   ++N+            +ID  +  E     
Sbjct: 157 LLVLDNPKYNERKQLGWSQVKMKAVLHNECIKNVLKKVDATEVDYIVIDQFAKQEVYEHY 216

Query: 133 AFAVI----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
           A   I          KG+S SL+IAAASII++    + M    K+   Y  +   G   A
Sbjct: 217 ALGAIPERQKTQFETKGESKSLAIAAASIISRYAFVKHMDQLSKR---YRMEILKG---A 270

Query: 183 KHQ------QVIKEKG 192
            H+      +VI++ G
Sbjct: 271 SHKVDVTAAKVIEKYG 286


>gi|229062239|ref|ZP_04199561.1| Ribonuclease HIII [Bacillus cereus AH603]
 gi|228717067|gb|EEL68746.1| Ribonuclease HIII [Bacillus cereus AH603]
          Length = 312

 Score = 79.3 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 25/171 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +  E+ +++  
Sbjct: 93  GTMSILGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLH 152

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTKPEGILIDQFTQPD 212

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                            +   KG+S+ L++AAASI+A+ +  +      KK
Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKK 263


>gi|228917194|ref|ZP_04080751.1| Ribonuclease HIII [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228842395|gb|EEM87486.1| Ribonuclease HIII [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 332

 Score = 79.3 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 25/171 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++ ++   + +++  
Sbjct: 114 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 173

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 174 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPD 233

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                            +   KG+S+ L++AAASI+A+ +  +      KK
Sbjct: 234 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 284


>gi|228903073|ref|ZP_04067210.1| Ribonuclease HIII [Bacillus thuringiensis IBL 4222]
 gi|228856559|gb|EEN01082.1| Ribonuclease HIII [Bacillus thuringiensis IBL 4222]
          Length = 337

 Score = 79.3 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 30/196 (15%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
             + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++    
Sbjct: 121 MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKSLNDDQITAIAKQLLHVV 180

Query: 80  IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129
             S     ++  ++      N  K        A+ NL        P   LID  + P+  
Sbjct: 181 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLGKMAPTKPEGVLIDQFTQPDTY 240

Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174
                          +   KG+S+ L++AAASI+A+ +     D L + A    P  G  
Sbjct: 241 YKYLTKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAG 299

Query: 175 SHVGYPTAKHQQVIKE 190
             V    AK  Q + +
Sbjct: 300 KQVDIAAAKLIQKLGK 315


>gi|222098020|ref|YP_002532077.1| ribonuclease hiii [Bacillus cereus Q1]
 gi|221242078|gb|ACM14788.1| ribonuclease HII [Bacillus cereus Q1]
          Length = 276

 Score = 79.3 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 25/171 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++ ++   + +++  
Sbjct: 58  GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 117

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL      + P   LID  + P+
Sbjct: 118 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPIKPEGVLIDQFTQPD 177

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                            +   KG+S+ L++AAASI+A+ +  +      KK
Sbjct: 178 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 228


>gi|152976941|ref|YP_001376458.1| ribonuclease HIII [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025693|gb|ABS23463.1| ribonuclease HIII [Bacillus cytotoxicus NVH 391-98]
          Length = 338

 Score = 79.3 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/198 (25%), Positives = 81/198 (40%), Gaps = 30/198 (15%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK--- 74
               + G DEVG G   GP+ V A  +D   IP     G+ DSK ++  +   + ++   
Sbjct: 119 GTMSIIGSDEVGTGDYFGPMTVVAAYVDAKQIPLLKELGVKDSKNLNDAQITAIAKQLLT 178

Query: 75  -ITSSAIISISSASHQYIDKHNIH-KATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
            I  S+++  +   ++  DK N   K        A+ NL        P   LID  + P+
Sbjct: 179 VIPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAIINLLAKIAPTKPDGILIDQFTQPD 238

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172
                            +   KG+SI L++AAASI+A+ +     D L + A  + P  G
Sbjct: 239 TYYKYLANQKQVQRDNVYFATKGESIHLAVAAASILARYSFVKQFDELSKKAGMQLPK-G 297

Query: 173 FDSHVGYPTAKHQQVIKE 190
               V    AK  Q + +
Sbjct: 298 AGKQVDIAAAKLIQKLGK 315


>gi|228967653|ref|ZP_04128674.1| Ribonuclease HIII [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228792029|gb|EEM39610.1| Ribonuclease HIII [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 332

 Score = 79.3 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 30/196 (15%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
             + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++    
Sbjct: 116 MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVV 175

Query: 80  IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129
             S     ++  ++      N  K        A+ NL        P   LID  + P+  
Sbjct: 176 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLGKMAPTKPEGVLIDQFTQPDTY 235

Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174
                          +   KG+S+ L++AAASI+A+ +     D L + A    P  G  
Sbjct: 236 YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAG 294

Query: 175 SHVGYPTAKHQQVIKE 190
             V    AK  Q + +
Sbjct: 295 KQVDIAAAKLIQKLGK 310


>gi|116618810|ref|YP_819181.1| ribonuclease HIII [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
 gi|122270990|sp|Q03VG4|RNH3_LEUMM RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|116097657|gb|ABJ62808.1| Ribonuclease HIII [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 303

 Score = 79.3 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 26/168 (15%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
           W V G DEVG GA  GP+  AA+ +   N+      GI DSK ++  + +++  +I +  
Sbjct: 89  WSVLGSDEVGAGAYFGPLTTAAVYVSQENLEWVRALGIADSKTLTDDRMKKIAPQIIAKL 148

Query: 80  IISISSASHQYIDKHNIHKAT--LDAIYHAVENLQVI-------PRSALIDGRSIPEDL- 129
              + +   +  ++         + AI H     +V+       P++ LID  +      
Sbjct: 149 PHHVVNLMPEKYNQLQPLHNVNQMKAISHNFALGKVLDKISPITPQAILIDQFAQQSTYF 208

Query: 130 ----PCQAFAVI--------KGDSISLSIAAASIIAKVTRDRLMRIAH 165
                 +   +I        KG+   LS+AAASI+A+V     M    
Sbjct: 209 NYLKNAKQQRIIHENVYFTTKGEQYHLSVAAASILARVVELDAMSKLS 256


>gi|228974659|ref|ZP_04135225.1| Ribonuclease HIII [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228785062|gb|EEM33075.1| Ribonuclease HIII [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
          Length = 337

 Score = 79.3 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 30/196 (15%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
             + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++    
Sbjct: 121 MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVV 180

Query: 80  IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129
             S     ++  ++      N  K        A+ NL        P   LID  + P+  
Sbjct: 181 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTY 240

Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174
                          +   KG+S+ L++AAASI+A+ +     D L + A    P  G  
Sbjct: 241 YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAG 299

Query: 175 SHVGYPTAKHQQVIKE 190
             V    AK  Q + +
Sbjct: 300 KQVDIAAAKLIQKLGK 315


>gi|218899710|ref|YP_002448121.1| ribonuclease HIII [Bacillus cereus G9842]
 gi|218544745|gb|ACK97139.1| ribonuclease HIII [Bacillus cereus G9842]
          Length = 332

 Score = 79.3 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 30/196 (15%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
             + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++    
Sbjct: 116 MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVV 175

Query: 80  IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129
             S     ++  ++      N  K        A+ NL        P   LID  + P+  
Sbjct: 176 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLGKMAPTKPEGVLIDQFTQPDTY 235

Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174
                          +   KG+S+ L++AAASI+A+ +     D L + A    P  G  
Sbjct: 236 YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAG 294

Query: 175 SHVGYPTAKHQQVIKE 190
             V    AK  Q + +
Sbjct: 295 KQVDIAAAKLIQKLGK 310


>gi|300173789|ref|YP_003772955.1| ribonuclease hiii [Leuconostoc gasicomitatum LMG 18811]
 gi|299888168|emb|CBL92136.1| ribonuclease hiii [Leuconostoc gasicomitatum LMG 18811]
          Length = 309

 Score = 79.0 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 71/176 (40%), Gaps = 30/176 (17%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79
           W V G DEVG GA  GP+  AA+ +   NI      GI DSK ++  K  ++   I +  
Sbjct: 94  WSVLGSDEVGAGAYFGPLTTAAVFVAKENISWVRQLGIADSKTLTDAKMRQIAPDIIAKL 153

Query: 80  IISISSASHQY--IDKHNIHKATLDAIYHAVENLQV-------IPRSALIDGRSIPEDL- 129
              + +   +   I + N +   + AI H     +V       +P   LID  +      
Sbjct: 154 PHHVVNLMPEKYNILQKNNNVNQMKAISHNFALGKVLEKIAPTVPTGILIDQFAQESTYF 213

Query: 130 ------------PCQAFAVIKGDSISLSIAAASIIAKVTR----DRLMRIAHKKYP 169
                           +   KG+   LS+AAASI+A+V      D+L   A  + P
Sbjct: 214 KYLNNANQSNIVQQNVYFTTKGEQYHLSVAAASILARVVELDSLDKLSDEAGMRLP 269


>gi|319892130|ref|YP_004149005.1| Ribonuclease HIII [Staphylococcus pseudintermedius HKU10-03]
 gi|317161826|gb|ADV05369.1| Ribonuclease HIII [Staphylococcus pseudintermedius HKU10-03]
          Length = 312

 Score = 79.0 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 36/196 (18%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---SA 79
            G DE G G   GP+ V A  +   +IP     G++DSK+++ KK   L E++ +    +
Sbjct: 97  IGSDEAGSGDYFGPLTVCACYVSAQHIPILKELGVDDSKRLTDKKIVALAEQLVTFLPHS 156

Query: 80  IISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSIPEDLPCQ 132
           ++ + +  +    +    +  + A+ H   ++N+            +ID  +  E     
Sbjct: 157 LLVLDNPKYNERKQLGWSQVKMKAVLHNECIKNVLKKVDATEVDYIVIDQFAKQEVYEHY 216

Query: 133 AFAVI----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
           A   I          KG+S SL+IAAASII++    + M    K+   Y  +   G   A
Sbjct: 217 ALGAIPERQKTQFETKGESKSLAIAAASIISRYAFVKHMDQLSKR---YRMEILKG---A 270

Query: 183 KHQ------QVIKEKG 192
            H+      +VI++ G
Sbjct: 271 SHKVDVTAAKVIEKYG 286


>gi|228941735|ref|ZP_04104282.1| Ribonuclease HIII [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228981253|ref|ZP_04141553.1| Ribonuclease HIII [Bacillus thuringiensis Bt407]
 gi|228778453|gb|EEM26720.1| Ribonuclease HIII [Bacillus thuringiensis Bt407]
 gi|228817947|gb|EEM64025.1| Ribonuclease HIII [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 332

 Score = 79.0 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 30/196 (15%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
             + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++    
Sbjct: 116 MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVV 175

Query: 80  IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129
             S     ++  ++      N  K        A+ NL        P   LID  + P+  
Sbjct: 176 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTY 235

Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174
                          +   KG+S+ L++AAASI+A+ +     D L + A    P  G  
Sbjct: 236 YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAG 294

Query: 175 SHVGYPTAKHQQVIKE 190
             V    AK  Q + +
Sbjct: 295 KQVDIAAAKLIQKLGK 310


>gi|196042128|ref|ZP_03109412.1| ribonuclease HIII [Bacillus cereus NVH0597-99]
 gi|229093650|ref|ZP_04224750.1| Ribonuclease HIII [Bacillus cereus Rock3-42]
 gi|196027064|gb|EDX65687.1| ribonuclease HIII [Bacillus cereus NVH0597-99]
 gi|228689737|gb|EEL43544.1| Ribonuclease HIII [Bacillus cereus Rock3-42]
          Length = 337

 Score = 79.0 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 25/171 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++  
Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 178

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 238

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                            +   KG+S+ L++AAASI+A+ +  +      KK
Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 289


>gi|322490645|emb|CBZ25907.1| putative ribonuclease H [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 316

 Score = 79.0 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 80/225 (35%), Gaps = 51/225 (22%)

Query: 24  WPVAGIDEVGRGALAGPVVV-AAII-LDPNNIPF---GINDSKKISHKKREELYEKITSS 78
           + V GIDE GRG++ GP+V   A+I L  ++       + D K  + + R    +K+   
Sbjct: 44  YLVLGIDEAGRGSVIGPMVYTGAVISLGEHDELVRLCHVADRKMPNVRPRLASLQKLRQL 103

Query: 79  AII--SISSASHQYIDKHNIHKA--TLDAIYH--AVENLQV-------IPRSALIDGRSI 125
                     S + I           L+A+ H  A++ +            +A +D    
Sbjct: 104 KTFRSFTVFVSSEEISNTMAGHNGRNLNALSHETAIQIISEATLASAGKLCAAYVDTVGP 163

Query: 126 PEDLPC---------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
           P              +     K +S    ++AAS++AK  RD  +    +       +  
Sbjct: 164 PGTYQARLAGRFPHLRVTVAKKAESKFPIVSAASVVAKTARDAAIEALGE-------NIG 216

Query: 177 VGYP-TAKHQQVIKEKGPSCIH------------RLTFRPLRNLS 208
            GY    +    ++    S +H            R ++ P+  L+
Sbjct: 217 SGYLIDPRTMAWLR----SPVHRCFAFSHAYDSVRQSWGPVVQLA 257


>gi|229072058|ref|ZP_04205267.1| Ribonuclease HIII [Bacillus cereus F65185]
 gi|228710992|gb|EEL62958.1| Ribonuclease HIII [Bacillus cereus F65185]
          Length = 337

 Score = 79.0 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 30/196 (15%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
             + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++    
Sbjct: 121 MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVV 180

Query: 80  IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129
             S     ++  ++      N  K        A+ NL        P   LID  + P+  
Sbjct: 181 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTY 240

Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174
                          +   KG+S+ L++AAASI+A+ +     D L + A    P  G  
Sbjct: 241 YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAG 299

Query: 175 SHVGYPTAKHQQVIKE 190
             V    AK  Q + +
Sbjct: 300 KQVDIAAAKLIQKLGK 315


>gi|326942340|gb|AEA18236.1| ribonuclease HIII [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 311

 Score = 79.0 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 30/196 (15%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
             + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++    
Sbjct: 95  MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVV 154

Query: 80  IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129
             S     ++  ++      N  K        A+ NL        P   LID  + P+  
Sbjct: 155 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTY 214

Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174
                          +   KG+S+ L++AAASI+A+ +     D L + A    P  G  
Sbjct: 215 YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAG 273

Query: 175 SHVGYPTAKHQQVIKE 190
             V    AK  Q + +
Sbjct: 274 KQVDIAAAKLIQKLGK 289


>gi|228923300|ref|ZP_04086588.1| Ribonuclease HIII [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228836254|gb|EEM81607.1| Ribonuclease HIII [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 337

 Score = 79.0 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 86/224 (38%), Gaps = 38/224 (16%)

Query: 4   NSIPERPHFELEAMVREKNMWP--------VAGIDEVGRGALAGPVVVAAIILDPNNIP- 54
            ++ +RP   ++  V      P        + G DEVG G   GP+ V A+ +D   IP 
Sbjct: 93  QTVSQRPKTTVKKPVDSHRYAPPASISTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPL 152

Query: 55  ---FGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKH-----NIHKATLDAIYH 106
               G+ DSK ++  +   + +++      S     ++  ++      N  K        
Sbjct: 153 LKELGVKDSKNLNDDQITAIAKQLLHVVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNK 212

Query: 107 AVENL-----QVIPRSALIDGRSIPEDL-----------PCQAFAVIKGDSISLSIAAAS 150
           A+ NL        P   LID  + P+                 +   KG+S+ L++AAAS
Sbjct: 213 AITNLLAKMAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENVYFATKGESVHLAVAAAS 272

Query: 151 IIAKVT----RDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190
           I+A+ +     D L + A    P  G    V    AK  Q + +
Sbjct: 273 ILARYSFVKQFDELSKKAGMPLPK-GASKQVDIAAAKLIQKLGK 315


>gi|229916367|ref|YP_002885013.1| ribonuclease HIII [Exiguobacterium sp. AT1b]
 gi|229467796|gb|ACQ69568.1| ribonuclease HIII [Exiguobacterium sp. AT1b]
          Length = 305

 Score = 79.0 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 74/195 (37%), Gaps = 29/195 (14%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79
           W V G DEVG+G   GP+VV A  +  + I      G+ DSK++S  +   + + + ++ 
Sbjct: 88  WSVVGSDEVGKGDYFGPLVVVAAFVSRDQIALVKELGVKDSKQLSDPEIIRIAKDLHATI 147

Query: 80  IISISSASHQYIDKHN-------IHKATLDAIYHA-VENLQVIPRSALIDGRSIPEDLPC 131
               ++  +   +          +     +A   A +E L   P + LID  +       
Sbjct: 148 PYQKATLHNPTYNNMQRTMTQGKMTAIAHNAALRALLEKLGQKPDAILIDQFAEKSVYYQ 207

Query: 132 QAFAV-----------IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
              A             K + + +++AAASI+A+    + M    K+    G     G  
Sbjct: 208 HLRAERDIVRDDVYFSTKAEGLHVAVAAASILARAFFLKEMDKLSKQA---GLTLPKGAG 264

Query: 181 TAKHQQV---IKEKG 192
               Q     I+  G
Sbjct: 265 AKVDQVAAQIIRRHG 279


>gi|324328447|gb|ADY23707.1| ribonuclease HIII [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 311

 Score = 79.0 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 25/171 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++  
Sbjct: 93  GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 152

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 212

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                            +   KG+S+ L++AAASI+A+ +  +      KK
Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 263


>gi|325568912|ref|ZP_08145205.1| ribonuclease HIII [Enterococcus casseliflavus ATCC 12755]
 gi|325157950|gb|EGC70106.1| ribonuclease HIII [Enterococcus casseliflavus ATCC 12755]
          Length = 308

 Score = 79.0 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 73/191 (38%), Gaps = 26/191 (13%)

Query: 3   CNSIPERPHFELEAMVREKNM--WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FG 56
            +++P++    +             V G DEVG G+  GP+VV A+      +P     G
Sbjct: 69  ASAVPDKKKATVSTTALPAGFSEKSVVGSDEVGNGSYFGPLVVCAVYAKKEQLPQLKALG 128

Query: 57  INDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDA----IYHAVENL- 111
           + DSK ++  +  ++  KI       + + +    ++      T+         A+  L 
Sbjct: 129 VKDSKMLTDPEIRKMAPKIKELVPYQLLTVTPSKYNEIQPKYNTVRMKVALHNQAIRLLL 188

Query: 112 ----QVIPRSALIDGRSIPEDL-----------PCQAFAVIKGDSISLSIAAASIIAKVT 156
                  P + LID  +  ++              + +   KG+   L++AAASI+ +  
Sbjct: 189 QKIAPETPDAILIDQFTSEKNYRTYLKSEQAAVTEKLYFATKGEQYHLAVAAASILCRTV 248

Query: 157 RDRLMRIAHKK 167
               +  A K+
Sbjct: 249 FLDELEAASKE 259


>gi|228910380|ref|ZP_04074195.1| Ribonuclease HIII [Bacillus thuringiensis IBL 200]
 gi|228849146|gb|EEM93985.1| Ribonuclease HIII [Bacillus thuringiensis IBL 200]
          Length = 332

 Score = 78.6 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 25/171 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++  
Sbjct: 114 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 173

Query: 78  SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127
               S     ++  ++      N  K        A+ NL        P   LID  + P+
Sbjct: 174 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 233

Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                            +   KG+S+ L++AAASI+A+ +  +      KK
Sbjct: 234 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 284


>gi|282908430|ref|ZP_06316261.1| LOW QUALITY PROTEIN: ribonuclease HIII [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282328095|gb|EFB58377.1| LOW QUALITY PROTEIN: ribonuclease HIII [Staphylococcus aureus
           subsp. aureus WW2703/97]
          Length = 247

 Score = 78.6 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 25/180 (13%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR 68
            LE  +       + G DE G G   GP+ V A  +   ++P     G++DSKK++  K 
Sbjct: 69  SLEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKI 127

Query: 69  EELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSA 118
            EL E++ +    +++++ +  +         +  + A+ H  A++N+            
Sbjct: 128 VELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYI 187

Query: 119 LIDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
           +ID  +  E           LP +     KG+S SL+IA ASII++      M    KKY
Sbjct: 188 VIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFITYMDQISKKY 247


>gi|229180875|ref|ZP_04308210.1| Ribonuclease HIII [Bacillus cereus 172560W]
 gi|228602432|gb|EEK59918.1| Ribonuclease HIII [Bacillus cereus 172560W]
          Length = 337

 Score = 78.6 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 30/196 (15%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
             + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++    
Sbjct: 121 MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVV 180

Query: 80  IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129
             S     ++  ++      N  K        A+ NL        P   LID  + P+  
Sbjct: 181 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTY 240

Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174
                          +   KG+S+ L++AAASI+A+ +     D L + A    P  G  
Sbjct: 241 YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAG 299

Query: 175 SHVGYPTAKHQQVIKE 190
             V    AK  Q + +
Sbjct: 300 KQVDIAAAKLIQKLGK 315


>gi|206969869|ref|ZP_03230823.1| ribonuclease HIII [Bacillus cereus AH1134]
 gi|206735557|gb|EDZ52725.1| ribonuclease HIII [Bacillus cereus AH1134]
          Length = 311

 Score = 78.6 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 30/196 (15%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
             + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++    
Sbjct: 95  MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVV 154

Query: 80  IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129
             S     ++  ++      N  K        A+ NL        P   LID  + P+  
Sbjct: 155 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTY 214

Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174
                          +   KG+S+ L++AAASI+A+ +     D L + A    P  G  
Sbjct: 215 YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAG 273

Query: 175 SHVGYPTAKHQQVIKE 190
             V    AK  Q + +
Sbjct: 274 KQVDIAAAKLIQKLGK 289


>gi|313901027|ref|ZP_07834515.1| ribonuclease HIII [Clostridium sp. HGF2]
 gi|312953985|gb|EFR35665.1| ribonuclease HIII [Clostridium sp. HGF2]
          Length = 300

 Score = 78.6 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 75/197 (38%), Gaps = 28/197 (14%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKIT 76
           K ++P AG DEVG G   GPV V A  +   ++ F    GI DSK I       +  K+ 
Sbjct: 87  KAIYPQAGSDEVGTGDYFGPVTVCATCVRHEDVEFLRSLGIQDSKAIDDTAIRRMAPKLM 146

Query: 77  S---SAIISISSASHQYIDKHNIHKATL-----DAIYHAVENLQVIPRSALIDGR----- 123
                +++ + +A++  I   N   A        A  H  + +  +P+  +ID       
Sbjct: 147 ERLPHSLLILDNATYNRIHGENNMVAIKSRMHNQAYVHLRKKMGSLPQFCIIDQFVQKTS 206

Query: 124 -----SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
                    ++        K ++  LS+AA SIIA+      ++        Y F    G
Sbjct: 207 YYRYLKHEREVVYDIHFETKAENKYLSVAAGSIIARYA---FLKAFDAMCEQYDFTFLKG 263

Query: 179 YPTAKH---QQVIKEKG 192
             +      ++ +   G
Sbjct: 264 AGSKVDQNIREFVAMHG 280


>gi|329725159|gb|EGG61648.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 21172]
          Length = 318

 Score = 78.2 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 52/214 (24%), Positives = 80/214 (37%), Gaps = 37/214 (17%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR 68
            LE  +       + G DE G G   GP+ V A  +   ++P     G++DSKK++  K 
Sbjct: 91  SLEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKI 149

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLD--------AIYHAVENL-----QVIP 115
            EL E++ +       S    + DK+NI +A               A++N+         
Sbjct: 150 VELAEQLVA---FIPHSLLTLHNDKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQL 206

Query: 116 RSALIDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165
              +ID  +  E           LP +     KG+S SL+IA ASII++      M    
Sbjct: 207 DYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFITYMDQIS 266

Query: 166 KKYPDYGFDSHVGYPTAKHQQV---IKEKGPSCI 196
           K           G            IK+ G S +
Sbjct: 267 KY---INMTIPKGAGAKVDVIAAKIIKKYGLSRL 297


>gi|269202752|ref|YP_003282021.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ED98]
 gi|262075042|gb|ACY11015.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ED98]
          Length = 312

 Score = 78.2 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 52/214 (24%), Positives = 80/214 (37%), Gaps = 37/214 (17%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR 68
            LE  +       + G DE G G   GP+ V A  +   ++P     G++DSKK++  K 
Sbjct: 85  SLEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKI 143

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLD--------AIYHAVENL-----QVIP 115
            EL E++ +       S    + DK+NI +A               A++N+         
Sbjct: 144 VELAEQLVA---FIPHSLLTLHNDKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQL 200

Query: 116 RSALIDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165
              +ID  +  E           LP +     KG+S SL+IA ASII++      M    
Sbjct: 201 DYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFITYMDQIS 260

Query: 166 KKYPDYGFDSHVGYPTAKHQQV---IKEKGPSCI 196
           K           G            IK+ G S +
Sbjct: 261 KY---INMTIPKGAGAKVDVIAAKIIKKYGLSRL 291


>gi|229081809|ref|ZP_04214301.1| Ribonuclease HIII [Bacillus cereus Rock4-2]
 gi|228701397|gb|EEL53891.1| Ribonuclease HIII [Bacillus cereus Rock4-2]
          Length = 332

 Score = 78.2 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 30/196 (15%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
             + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++    
Sbjct: 116 MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVV 175

Query: 80  IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129
             S     ++  ++      N  K        A+ NL        P   LID  + P+  
Sbjct: 176 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTY 235

Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174
                          +   KG+S+ L++AAASI+A+ +     D L + A    P  G  
Sbjct: 236 YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAG 294

Query: 175 SHVGYPTAKHQQVIKE 190
             V    AK  Q + +
Sbjct: 295 KQVDIAAAKLIQKLGK 310


>gi|170016688|ref|YP_001727607.1| ribonuclease H [Leuconostoc citreum KM20]
 gi|238688947|sp|B1MXB1|RNH3_LEUCK RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|169803545|gb|ACA82163.1| Ribonuclease H [Leuconostoc citreum KM20]
          Length = 308

 Score = 78.2 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 26/170 (15%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
           W V G DEVG GA  GP+  AA+ +  N++      GI DSK ++  K  ++  +I    
Sbjct: 93  WSVIGSDEVGAGAYFGPLTTAAVFVSKNDLDWVKALGIADSKTLTDAKMRDIAPEIIQRL 152

Query: 80  IISISSASHQYIDKHNIH-------KATLDAIYHAVEN--LQVIPRSALIDGRSIPEDL- 129
              + +   +  +    H         + +   H V      + P + LID  +      
Sbjct: 153 PHHVVNLLPEKYNALQPHNNVNQLKAISHNFALHKVLEKIAPITPDAILIDQFAQATTYF 212

Query: 130 ----PCQAFAVI--------KGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                 Q   VI        KG+   LS+AAASI+A+V     M     +
Sbjct: 213 NYLSKAQQSPVIRQNVYFTTKGEQYHLSVAAASILARVVELDTMVALSHE 262


>gi|319776859|ref|YP_004136510.1| ribonuclease [Mycoplasma fermentans M64]
 gi|318037934|gb|ADV34133.1| Ribonuclease [Mycoplasma fermentans M64]
          Length = 249

 Score = 78.2 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 71/188 (37%), Gaps = 33/188 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81
           + G+DEVG G   GP+  AA+ +  +     I  G+ DSKK+S K+ + +  K+      
Sbjct: 17  LIGVDEVGVGDYFGPLCCAAVFIPQDKIQEVIDLGVKDSKKLSDKQIKMMAYKLKKIVKY 76

Query: 82  SISSASHQ----YIDKHNIHKATLDAIYHAVENLQVIP---RSALIDGRSIPEDL----- 129
           +I   S +        +N +   +     A+ +LQ          ID  S    +     
Sbjct: 77  AIHHLSPKGYNTLNKTYNGNFLKMFTHLSAISSLQEKIGAVDYVFIDQYSTKSSIERYYT 136

Query: 130 ------PCQAFAVIKGD--------SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
                     F  I+GD        SISL +A ASIIA   RD  +    K    Y    
Sbjct: 137 DLVKLNNWADFNQIQGDILLAYKAESISLEVACASIIA---RDYFLYFMQKMNEQYNCKF 193

Query: 176 HVGYPTAK 183
             G  +  
Sbjct: 194 PFGAGSKV 201


>gi|314936680|ref|ZP_07844027.1| ribonuclease HIII [Staphylococcus hominis subsp. hominis C80]
 gi|313655299|gb|EFS19044.1| ribonuclease HIII [Staphylococcus hominis subsp. hominis C80]
          Length = 308

 Score = 78.2 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 36/200 (18%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---SA 79
            G DE G G   GP+ V A  +   +I      G++DSKK++  K  EL E++ +    +
Sbjct: 92  IGSDEAGSGDYFGPLTVCAAYVSKEHIDILRTLGVDDSKKLTDTKIIELAEQLITFIPHS 151

Query: 80  IISISSASHQYIDKHNIHKATLDAIYH--AVENLQVIP-----RSALIDGRS-------- 124
           ++++++  +         +  + A+ H  A++N+            +ID  +        
Sbjct: 152 LLTLNNTKYNERQALGWSQVKMKAVLHNEAIKNVTNKIDTKALDYIVIDQFAERNVYKRY 211

Query: 125 --IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
                  P Q     KG+S SL+IAAASII++    + M    K      FD   G   A
Sbjct: 212 ALSDLPFPNQTKFETKGESKSLAIAAASIISRYAFIKHMNSISK---MMHFDIPKG---A 265

Query: 183 KHQ------QVIKEKGPSCI 196
            H+      Q+I++   S +
Sbjct: 266 SHKVDLIAAQIIEKYNISKL 285


>gi|308189676|ref|YP_003922607.1| ribonuclease H [Mycoplasma fermentans JER]
 gi|307624418|gb|ADN68723.1| ribonuclease H [Mycoplasma fermentans JER]
          Length = 249

 Score = 78.2 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 71/188 (37%), Gaps = 33/188 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81
           + G+DEVG G   GP+  AA+ +  +     I  G+ DSKK+S K+ + +  K+      
Sbjct: 17  LIGVDEVGVGDYFGPLCCAAVFIPQDKIQEVIDLGVKDSKKLSDKQIKMMAYKLKKIVKY 76

Query: 82  SISSASHQ----YIDKHNIHKATLDAIYHAVENLQVIP---RSALIDGRSIPEDL----- 129
           +I   S +        +N +   +     A+ +LQ          ID  S    +     
Sbjct: 77  AIHHLSPKGYNTLNKTYNGNFLKMFTHLSAISSLQEKIGAVDYVFIDQYSTKSSIERYYT 136

Query: 130 ------PCQAFAVIKGD--------SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
                     F  I+GD        SISL +A ASIIA   RD  +    K    Y    
Sbjct: 137 DLVKLNNWADFNQIQGDILLAYKAESISLEVACASIIA---RDYFLYFMQKMNEQYNCKF 193

Query: 176 HVGYPTAK 183
             G  +  
Sbjct: 194 PFGAGSKV 201


>gi|238809644|dbj|BAH69434.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 250

 Score = 78.2 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 71/188 (37%), Gaps = 33/188 (17%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81
           + G+DEVG G   GP+  AA+ +  +     I  G+ DSKK+S K+ + +  K+      
Sbjct: 18  LIGVDEVGVGDYFGPLCCAAVFIPQDKIQEVIDLGVKDSKKLSDKQIKMMAYKLKKIVKY 77

Query: 82  SISSASHQ----YIDKHNIHKATLDAIYHAVENLQVIP---RSALIDGRSIPEDL----- 129
           +I   S +        +N +   +     A+ +LQ          ID  S    +     
Sbjct: 78  AIHHLSPKGYNTLNKTYNGNFLKMFTHLSAISSLQEKIGAVDYVFIDQYSTKSSIERYYT 137

Query: 130 ------PCQAFAVIKGD--------SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
                     F  I+GD        SISL +A ASIIA   RD  +    K    Y    
Sbjct: 138 DLVKLNNWADFNQIQGDILLAYKAESISLEVACASIIA---RDYFLYFMQKMNEQYNCKF 194

Query: 176 HVGYPTAK 183
             G  +  
Sbjct: 195 PFGAGSKV 202


>gi|228476267|ref|ZP_04060969.1| ribonuclease hiii [Staphylococcus hominis SK119]
 gi|228269670|gb|EEK11172.1| ribonuclease hiii [Staphylococcus hominis SK119]
          Length = 308

 Score = 78.2 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 36/200 (18%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---SA 79
            G DE G G   GP+ V A  +   +I      G++DSKK++  K  EL E++ +    +
Sbjct: 92  IGSDEAGSGDYFGPLTVCAAYVSKEHIDILRTLGVDDSKKLTDTKIIELAEQLITFIPHS 151

Query: 80  IISISSASHQYIDKHNIHKATLDAIYH--AVENLQVIP-----RSALIDGRS-------- 124
           ++++++  +         +  + A+ H  A++N+            +ID  +        
Sbjct: 152 LLTLNNTKYNERQALGWSQVKMKAVLHNEAIKNVTNKIDTKALDYIVIDQFAERNVYKRY 211

Query: 125 --IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
                  P Q     KG+S SL+IAAASII++    + M    K      FD   G   A
Sbjct: 212 ALSDLPFPNQTKFETKGESKSLAIAAASIISRYAFIKHMNSISK---MMHFDIPKG---A 265

Query: 183 KHQ------QVIKEKGPSCI 196
            H+      Q+I++   S +
Sbjct: 266 SHKVDLIAAQIIEKYNISKL 285


>gi|15924130|ref|NP_371664.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926724|ref|NP_374257.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus N315]
 gi|148267632|ref|YP_001246575.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus JH9]
 gi|150393687|ref|YP_001316362.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus JH1]
 gi|156979462|ref|YP_001441721.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus Mu3]
 gi|253317077|ref|ZP_04840290.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255005926|ref|ZP_05144527.2| ribonuclease HIII [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257795130|ref|ZP_05644109.1| ribonuclease HIII [Staphylococcus aureus A9781]
 gi|258407162|ref|ZP_05680311.1| ribonuclease HIII [Staphylococcus aureus A9763]
 gi|258421747|ref|ZP_05684668.1| ribonuclease HIII [Staphylococcus aureus A9719]
 gi|258432909|ref|ZP_05688598.1| ribonuclease HIII [Staphylococcus aureus A9299]
 gi|258443399|ref|ZP_05691742.1| ribonuclease HIII [Staphylococcus aureus A8115]
 gi|258446072|ref|ZP_05694234.1| ribonuclease HIII [Staphylococcus aureus A6300]
 gi|258449815|ref|ZP_05697913.1| ribonuclease HIII [Staphylococcus aureus A6224]
 gi|258454914|ref|ZP_05702877.1| ribonuclease HIII [Staphylococcus aureus A5937]
 gi|282894167|ref|ZP_06302398.1| ribonuclease HIII [Staphylococcus aureus A8117]
 gi|282928662|ref|ZP_06336259.1| ribonuclease HIII [Staphylococcus aureus A10102]
 gi|295405944|ref|ZP_06815753.1| ribonuclease HIII [Staphylococcus aureus A8819]
 gi|296275627|ref|ZP_06858134.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MR1]
 gi|297246504|ref|ZP_06930342.1| ribonuclease HIII [Staphylococcus aureus A8796]
 gi|73917849|sp|Q99UW5|RNH3_STAAM RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|73917850|sp|Q7A647|RNH3_STAAN RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|166226672|sp|A7X163|RNH3_STAA1 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|189043676|sp|A6U0V7|RNH3_STAA2 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|189043677|sp|A5IS26|RNH3_STAA9 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|13700940|dbj|BAB42236.1| SA0987 [Staphylococcus aureus subsp. aureus N315]
 gi|14246910|dbj|BAB57302.1| putative ribonuclease HIII [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|147740701|gb|ABQ48999.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus JH9]
 gi|149946139|gb|ABR52075.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus JH1]
 gi|156721597|dbj|BAF78014.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|257789102|gb|EEV27442.1| ribonuclease HIII [Staphylococcus aureus A9781]
 gi|257841317|gb|EEV65762.1| ribonuclease HIII [Staphylococcus aureus A9763]
 gi|257842080|gb|EEV66508.1| ribonuclease HIII [Staphylococcus aureus A9719]
 gi|257849349|gb|EEV73326.1| ribonuclease HIII [Staphylococcus aureus A9299]
 gi|257851489|gb|EEV75428.1| ribonuclease HIII [Staphylococcus aureus A8115]
 gi|257855130|gb|EEV78071.1| ribonuclease HIII [Staphylococcus aureus A6300]
 gi|257856735|gb|EEV79638.1| ribonuclease HIII [Staphylococcus aureus A6224]
 gi|257862794|gb|EEV85559.1| ribonuclease HIII [Staphylococcus aureus A5937]
 gi|282589701|gb|EFB94787.1| ribonuclease HIII [Staphylococcus aureus A10102]
 gi|282763653|gb|EFC03782.1| ribonuclease HIII [Staphylococcus aureus A8117]
 gi|285816820|gb|ADC37307.1| Ribonuclease HIII [Staphylococcus aureus 04-02981]
 gi|294969379|gb|EFG45399.1| ribonuclease HIII [Staphylococcus aureus A8819]
 gi|297176610|gb|EFH35873.1| ribonuclease HIII [Staphylococcus aureus A8796]
 gi|312829533|emb|CBX34375.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128537|gb|EFT84542.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus CGS03]
          Length = 312

 Score = 78.2 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 52/214 (24%), Positives = 80/214 (37%), Gaps = 37/214 (17%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR 68
            LE  +       + G DE G G   GP+ V A  +   ++P     G++DSKK++  K 
Sbjct: 85  SLEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKI 143

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLD--------AIYHAVENL-----QVIP 115
            EL E++ +       S    + DK+NI +A               A++N+         
Sbjct: 144 VELAEQLVA---FIPHSLLTLHNDKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQL 200

Query: 116 RSALIDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165
              +ID  +  E           LP +     KG+S SL+IA ASII++      M    
Sbjct: 201 DYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFITYMDQIS 260

Query: 166 KKYPDYGFDSHVGYPTAKHQQV---IKEKGPSCI 196
           K           G            IK+ G S +
Sbjct: 261 KY---INMTIPKGAGAKVDVIAAKIIKKYGLSRL 291


>gi|228954825|ref|ZP_04116845.1| Ribonuclease HIII [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228804814|gb|EEM51413.1| Ribonuclease HIII [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 337

 Score = 78.2 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 30/196 (15%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
             + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++    
Sbjct: 121 MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQIIAIAKQLLHVV 180

Query: 80  IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129
             S     ++  ++      N  K        A+ NL        P   LID  + P+  
Sbjct: 181 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTY 240

Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174
                          +   KG+S+ L++AAASI+A+ +     D L + A    P  G  
Sbjct: 241 YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAG 299

Query: 175 SHVGYPTAKHQQVIKE 190
             V    AK  Q + +
Sbjct: 300 KQVDIAAAKLIQKLGK 315


>gi|52081363|ref|YP_080154.1| ribonuclease HIII [Bacillus licheniformis ATCC 14580]
 gi|52786740|ref|YP_092569.1| ribonuclease HIII [Bacillus licheniformis ATCC 14580]
 gi|319647270|ref|ZP_08001492.1| ribonuclease HIII [Bacillus sp. BT1B_CT2]
 gi|73917844|sp|Q65GD8|RNH3_BACLD RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|52004574|gb|AAU24516.1| ribonuclease HIII [Bacillus licheniformis ATCC 14580]
 gi|52349242|gb|AAU41876.1| RnhC [Bacillus licheniformis ATCC 14580]
 gi|317390617|gb|EFV71422.1| ribonuclease HIII [Bacillus sp. BT1B_CT2]
          Length = 313

 Score = 78.2 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 24/170 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               V G DEVG G   GP+ VA +  D   +P     G+ DSK +   +  ++   +  
Sbjct: 94  GSMSVIGSDEVGTGDYFGPITVACVYADKAKLPLLKELGVKDSKNLKDPQIVQIARDLIK 153

Query: 78  SAIISISSASHQ---YIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGRSIPE 127
           +   S+    ++    + +  + +  + A     A+ NL        P + LID  + P 
Sbjct: 154 TVPYSLLVLRNEKYNEMQEKGMSQGKMKALLHNQAIGNLLKKLDGTRPEAILIDQFAEPA 213

Query: 128 DL----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                         + +   K + I LS+AAASIIA+ +    M    K+
Sbjct: 214 VYFKHLAGKTAVKERTYFSTKAEGIHLSVAAASIIARYSFLMEMDKLSKQ 263


>gi|282916389|ref|ZP_06324151.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus D139]
 gi|283770200|ref|ZP_06343092.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus H19]
 gi|282319829|gb|EFB50177.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus D139]
 gi|283460347|gb|EFC07437.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus H19]
          Length = 318

 Score = 78.2 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 31/211 (14%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR 68
            LE  +       + G DE G G   GP+ V A  +   ++P     G++DSKK++  K 
Sbjct: 91  SLEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKI 149

Query: 69  EELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSA 118
            EL E++ +    +++++ +  +         +  + A+ H  A++N+            
Sbjct: 150 VELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYI 209

Query: 119 LIDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
           +ID  +  E           LP +     KG+S SL+IA ASII++      M    K  
Sbjct: 210 VIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK-- 267

Query: 169 PDYGFDSHVGYPTAKHQQV---IKEKGPSCI 196
            +       G  T         IK+ G S +
Sbjct: 268 -NINMTIPKGAGTKVDVIAAKIIKKYGLSRL 297


>gi|229175263|ref|ZP_04302778.1| Ribonuclease HIII [Bacillus cereus MM3]
 gi|228608095|gb|EEK65402.1| Ribonuclease HIII [Bacillus cereus MM3]
          Length = 332

 Score = 78.2 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 25/169 (14%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
             + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++    
Sbjct: 116 MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVV 175

Query: 80  IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129
             S     ++  ++      N  K        A+ NL        P   LID  + P+  
Sbjct: 176 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTY 235

Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                          +   KG+S+ L++AAASI+A+ +  +      KK
Sbjct: 236 YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 284


>gi|296111199|ref|YP_003621580.1| ribonuclease HIII [Leuconostoc kimchii IMSNU 11154]
 gi|295832730|gb|ADG40611.1| ribonuclease HIII [Leuconostoc kimchii IMSNU 11154]
          Length = 307

 Score = 78.2 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 26/170 (15%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
           W V G DEVG GA  GP+  AA+ +   ++      GI DSK ++  K  ++  +I +  
Sbjct: 93  WSVLGSDEVGAGAYFGPLTTAAVFVSQRDLKWVRQLGIADSKTLTDDKMRQIAPEIIARL 152

Query: 80  IISISSASHQYIDKHNI--HKATLDAIYHAVENLQV-------IPRSALIDGRSIPEDLP 130
              + +   +  ++     +   L AI H     +V        P   LID  +      
Sbjct: 153 PHHVVNLMPEKYNQLQPTNNVNQLKAISHNFVLGKVLEKIDPTRPDGILIDQFAQESTYF 212

Query: 131 -----CQAFAVI--------KGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                 +   +I        KG+   LS+AAASI+A+V     M    ++
Sbjct: 213 NYLQRAKQQHIIRQNVYFTTKGEQYHLSVAAASILARVVELDSMASLSQE 262


>gi|229026003|ref|ZP_04182387.1| Ribonuclease HIII [Bacillus cereus AH1272]
 gi|228735284|gb|EEL85895.1| Ribonuclease HIII [Bacillus cereus AH1272]
          Length = 332

 Score = 77.8 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 25/169 (14%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
             + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++    
Sbjct: 116 MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVV 175

Query: 80  IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129
             S     ++  ++      N  K        A+ NL        P   LID  + P+  
Sbjct: 176 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTY 235

Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                          +   KG+S+ L++AAASI+A+ +  +      KK
Sbjct: 236 YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 284


>gi|229019776|ref|ZP_04176579.1| Ribonuclease HIII [Bacillus cereus AH1273]
 gi|228741501|gb|EEL91698.1| Ribonuclease HIII [Bacillus cereus AH1273]
          Length = 337

 Score = 77.8 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 25/169 (14%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
             + G DEVG G   GP+ V A+ +D   IP     G+ DSK ++  +   + +++    
Sbjct: 121 MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVV 180

Query: 80  IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129
             S     ++  ++      N  K        A+ NL        P   LID  + P+  
Sbjct: 181 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTY 240

Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                          +   KG+S+ L++AAASI+A+ +  +      KK
Sbjct: 241 YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 289


>gi|330685731|gb|EGG97367.1| ribonuclease HIII [Staphylococcus epidermidis VCU121]
          Length = 259

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 24/171 (14%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKI 75
           + N +   G DE G G   GP+ V A  +  +++      G++DSKK++  K  EL E++
Sbjct: 88  KYNQYNCIGSDEAGSGDYFGPLTVCAAYVTKDHVKILKELGVDDSKKLTDAKIVELAEQL 147

Query: 76  TS---SAIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGRS- 124
            +    +++++ +  +    +    +  + A     A+ N+            +ID  + 
Sbjct: 148 VTFIPHSLLTLDNVKYNERQRAGWSQVKMKAVLHNQAIANVVQKIDAPSLDYIVIDQFAE 207

Query: 125 ---------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166
                         P +     KG+S SL+IAAASII++    + M    K
Sbjct: 208 RGVYQRYALSDLPFPNKTKFETKGESKSLAIAAASIISRYAFVKHMDQMSK 258


>gi|311031392|ref|ZP_07709482.1| ribonuclease HIII [Bacillus sp. m3-13]
          Length = 318

 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 31/199 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81
           V G DEVG G   GP+ V A  +           G+ DSK ++ +K   + + I      
Sbjct: 104 VIGSDEVGTGDYFGPITVCAAYVKKEQMAMLKELGVQDSKALNDEKIVRIAKAILPHVPY 163

Query: 82  SISSASHQYIDKHNIH-------KATL--DAIYHAVENLQV-IPRSALIDGRS---IPED 128
           S+    ++  ++           KA L   A+ H ++ +    P + LID  +   I   
Sbjct: 164 SLLVLHNEKYNELQQSGMSQGKIKALLHNKALQHVLDKIAPEKPDAILIDQFAESGIYYR 223

Query: 129 LPCQAFAVI--------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
              Q   ++        K + + LS+AAASIIA+ +  + M    +     G     G  
Sbjct: 224 HVAQQKNIVRENVYFHTKAEGLHLSVAAASIIARYSFLKEMDKLSELA---GITIPKGAG 280

Query: 181 TAKHQQV---IKEKGPSCI 196
           +         I++ G S +
Sbjct: 281 SKVDAAAARVIEKHGESFL 299


>gi|261418289|ref|YP_003251971.1| ribonuclease HIII [Geobacillus sp. Y412MC61]
 gi|319767751|ref|YP_004133252.1| ribonuclease HIII [Geobacillus sp. Y412MC52]
 gi|261374746|gb|ACX77489.1| ribonuclease HIII [Geobacillus sp. Y412MC61]
 gi|317112617|gb|ADU95109.1| ribonuclease HIII [Geobacillus sp. Y412MC52]
          Length = 311

 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 25/164 (15%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS 82
            G DEVG G   GP+VVAA  +D ++I      G+ DSK+++ +  + +   I  +A  +
Sbjct: 96  IGSDEVGTGDYFGPIVVAAAYVDRSHIAKIAALGVKDSKQLNDEAIKRIAPAIMETAPYA 155

Query: 83  ISSASHQYIDKHNIH-----KATLDAIYHAVENL-----QVIPRSALIDGR--------- 123
           ++   +   ++         K         +  L      + P + +ID           
Sbjct: 156 VTVLDNAEYNRWQRSGMPQTKMKALLHNRTLAKLVDAIAPIEPEAIIIDEFLKRDSYFRY 215

Query: 124 --SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165
                  +  +   + K +S+ +S+AAASIIA+      M    
Sbjct: 216 LSDEDRIIRERVHCLPKAESVHVSVAAASIIARYVFLDEMERLS 259


>gi|293401505|ref|ZP_06645648.1| ribonuclease HIII [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305143|gb|EFE46389.1| ribonuclease HIII [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 300

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 75/215 (34%), Gaps = 37/215 (17%)

Query: 3   CNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGIN 58
            +  P+ PH E          +P  G DEVG G   GP+ V    +   ++P     GI 
Sbjct: 75  PSDQPQNPHTEW---------YPQCGSDEVGTGDYFGPITVCTTYVKKEDVPFLRELGIQ 125

Query: 59  DSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATL--------DAIYHAVEN 110
           DSK ++ ++  EL   +      S+    +   +  +     +         A  H    
Sbjct: 126 DSKAVTDERIRELGPILCERLTYSLLVLDNAKYNAIHPQYNMVAIKSRLHNQAYVHLRRK 185

Query: 111 LQVIPRSALIDGR----------SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160
           L  +P   +ID               E++        K ++  LS+AA SIIA+      
Sbjct: 186 LGSLPSLCIIDQFVQAKSYYRYLHDVEEVVHTIHFETKAENKYLSVAAGSIIARYA---F 242

Query: 161 MRIAHKKYPDYGFDSHVGYPTA---KHQQVIKEKG 192
           ++        Y F    G  +      +  +K+ G
Sbjct: 243 LQAFDAMCQHYEFPFVKGAGSKVDQAIRAFVKQYG 277


>gi|223043745|ref|ZP_03613788.1| ribonuclease hiii [Staphylococcus capitis SK14]
 gi|222442842|gb|EEE48944.1| ribonuclease hiii [Staphylococcus capitis SK14]
          Length = 310

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 24/172 (13%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKI 75
           + N +   G DE G G   GP+ V A  +   N       G++DSKK++  K  EL E++
Sbjct: 87  QYNKYNCIGSDEAGSGDYFGPLTVCAAYVSEKNAQVLKTLGVDDSKKLTDDKIVELAEQL 146

Query: 76  TS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQVIP-----RSALIDGRSI 125
            +    +++++++  +    K    +  + A+ H  A++N+            +ID  + 
Sbjct: 147 ITFIPHSLLTLNNVKYNERQKMGWSQVKMKAVLHNEAIKNVVQKIDVDHLDYIVIDQFAK 206

Query: 126 PE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
            E            P +     KG+S SL+IAAASII++    + M    ++
Sbjct: 207 REVYQHYALSELPFPKKTQFETKGESKSLAIAAASIISRYAFVKHMNQITQQ 258


>gi|160914268|ref|ZP_02076489.1| hypothetical protein EUBDOL_00278 [Eubacterium dolichum DSM 3991]
 gi|158433895|gb|EDP12184.1| hypothetical protein EUBDOL_00278 [Eubacterium dolichum DSM 3991]
          Length = 288

 Score = 76.6 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 65/182 (35%), Gaps = 25/182 (13%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-- 77
           +P  G DEVG G   GPVVV A  +   ++       I DSK I       L   +    
Sbjct: 77  YPQCGSDEVGTGDYFGPVVVCASFVKEEDVSDLKKLNIQDSKAIDDTTIRTLAPTLIKQL 136

Query: 78  -SAIISISSASHQYIDKHNIHKATL-----DAIYHAVENLQVIPRSALIDGR-------- 123
             +++ + +A +  I   N   A        A  H    L  +P   ++D          
Sbjct: 137 PHSLLILDNAKYNQIHATNNMVAMKAKLHNQAYVHLKHKLGSLPSFCVVDQFVQAASYYR 196

Query: 124 --SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
              + +++        K ++  L++A ASIIA+      ++        Y F    G  +
Sbjct: 197 YIQMEKEIVRNLHFETKAENKYLAVACASIIARYA---FLKTFDAMEKHYDFHFLKGAGS 253

Query: 182 AK 183
             
Sbjct: 254 KV 255


>gi|50291445|ref|XP_448155.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527466|emb|CAG61106.1| unnamed protein product [Candida glabrata]
          Length = 307

 Score = 76.6 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 93/245 (37%), Gaps = 45/245 (18%)

Query: 4   NSIPERPHF-ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN------IPFG 56
           NS+  + ++ E+   V       + G+DE GRG + GP+V                  + 
Sbjct: 19  NSLKTKTYYSEIPKSVIANESPVILGVDEAGRGPVMGPMVYGISYCTKEYQDKVLIPKYT 78

Query: 57  INDSKKISHKKREELYEKITSSAIISISSA------------------SHQYIDKHNIHK 98
            +DSKK++   R  L+ K+ +  I  +  A                  S  Y      H 
Sbjct: 79  FDDSKKLTDPVRRMLFSKMYAGEIDQVGYATTAITPYDISTGMSRYPPSRNYNLNEQAHD 138

Query: 99  ATLDAIYHAVENLQVIPRSALIDGRSIP--------EDLPCQAFAVI-KGDSISLSIAAA 149
            T+ A+   V +  V      +D    P        +  P   F V  K DS+   ++ A
Sbjct: 139 VTM-ALIQGVIDRGVSIDHVYVDTVGPPASYQRKLEDRFPSIKFTVAKKADSLYCVVSVA 197

Query: 150 SIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIK-----EKG-PSCIHRLTFR 202
           S++AKVTRD L+    +  PD       GYP+  K    +K       G P  I R +++
Sbjct: 198 SVVAKVTRDLLIESLRRT-PD--EIMGSGYPSDPKTVAWLKGNQKPLLGWPIEIVRFSWQ 254

Query: 203 PLRNL 207
             + L
Sbjct: 255 TCQTL 259


>gi|239636364|ref|ZP_04677366.1| ribonuclease hiii [Staphylococcus warneri L37603]
 gi|239597719|gb|EEQ80214.1| ribonuclease hiii [Staphylococcus warneri L37603]
          Length = 309

 Score = 76.6 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 24/171 (14%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKI 75
           + N +   G DE G G   GP+ V A  +  +++      G++DSKK++  K  EL E++
Sbjct: 86  KYNQYNCIGSDEAGSGDYFGPLTVCAAYVTKDHVKILKELGVDDSKKLTDAKIVELAEQL 145

Query: 76  TS---SAIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGRS- 124
            +    +++++ +  +    +    +  + A     A+ N+            +ID  + 
Sbjct: 146 VTFIPHSLLTLDNVKYNERQRAGWSQVKMKAVLHNQAIANVVQKIDTHALDYIVIDQFAE 205

Query: 125 ---------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166
                         P +     KG+S SL+IAAASII++    + M    K
Sbjct: 206 RGVYQRYALSDLPFPNKTKFETKGESKSLAIAAASIISRYAFVKHMDQMSK 256


>gi|331244484|ref|XP_003334882.1| ribonuclease HI large subunit [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309313872|gb|EFP90463.1| ribonuclease HI large subunit [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 143

 Score = 76.6 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGIND 59
           S  +R     E    +++ W + GIDE GRG + GP+V  A            +  G  D
Sbjct: 32  STSDRKDITEEEEQLKRDNW-IMGIDEAGRGPVLGPMVYGAAFCTQAFAEDKLLDLGFAD 90

Query: 60  SKKISHKKREELYEKI 75
           SK ++H++REEL E I
Sbjct: 91  SKTLTHRRREELLEMI 106


>gi|323440689|gb|EGA98399.1| ribonuclease HIII [Staphylococcus aureus O11]
          Length = 318

 Score = 76.6 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 89/220 (40%), Gaps = 31/220 (14%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69
           LE  +       + G DE G G   GP+ V A  +   ++P     G++DSKK++  K  
Sbjct: 92  LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150

Query: 70  ELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSAL 119
           EL E++ +    +++++ +  +         +  + A+ H  A++N+            +
Sbjct: 151 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIV 210

Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
           ID  +  E           LP +     KG+S SL+IA ASII++      M    K   
Sbjct: 211 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK--- 267

Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPSCIHRLTFRPLRN 206
           +       G            IK+ G S +  ++ +  +N
Sbjct: 268 NINMTIPKGAGAKVDVIAAKIIKKYGISRLDTISKKNFKN 307


>gi|161777620|ref|YP_416488.2| ribonuclease HIII [Staphylococcus aureus RF122]
          Length = 312

 Score = 76.3 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 31/210 (14%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69
           LE  +       + G DE G G   GP+ V A  +   ++P     G++DSKK++  K  
Sbjct: 86  LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 144

Query: 70  ELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSAL 119
           EL E++ +    +++++ +  +         +  + A+ H  AV+N+            +
Sbjct: 145 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAVKNVLEKIDSSQLDYIV 204

Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
           ID  +  E           LP +     KG+S SL+IA ASII++      M    K   
Sbjct: 205 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK--- 261

Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPSCI 196
           +       G            IK+ G S +
Sbjct: 262 NINMTIPKGAGAKVDVIAAKIIKKYGISRL 291


>gi|82656278|emb|CAI80692.1| probable ribonuclease HIII [Staphylococcus aureus RF122]
          Length = 318

 Score = 76.3 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 31/210 (14%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69
           LE  +       + G DE G G   GP+ V A  +   ++P     G++DSKK++  K  
Sbjct: 92  LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150

Query: 70  ELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSAL 119
           EL E++ +    +++++ +  +         +  + A+ H  AV+N+            +
Sbjct: 151 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAVKNVLEKIDSSQLDYIV 210

Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
           ID  +  E           LP +     KG+S SL+IA ASII++      M    K   
Sbjct: 211 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK--- 267

Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPSCI 196
           +       G            IK+ G S +
Sbjct: 268 NINMTIPKGAGAKVDVIAAKIIKKYGISRL 297


>gi|289551055|ref|YP_003471959.1| Ribonuclease HIII [Staphylococcus lugdunensis HKU09-01]
 gi|289180587|gb|ADC87832.1| Ribonuclease HIII [Staphylococcus lugdunensis HKU09-01]
          Length = 310

 Score = 76.3 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 24/165 (14%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---SA 79
            G DE G G   GP+ V A  +  +++      G++DSKK++  K  +L E++ +    +
Sbjct: 94  IGSDEAGSGDYFGPLTVCAAYVTQSHVAILKTLGVDDSKKLTDTKIIDLAEQLVTFIPHS 153

Query: 80  IISISSASHQYIDKHNIHKATLDAIYH--AVENL--QVIPR---SALIDGRSIPE----- 127
           ++++ +  +         +  + A+ H  A++N+  ++ P      +ID  +  E     
Sbjct: 154 LLTLDNIKYNERQALGWSQVKMKAVLHNEAIKNVTQKIHPDNIDYIVIDQFAQREVYQHY 213

Query: 128 -----DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                  P +     KG+S SL+IAAASII++    + M    +K
Sbjct: 214 ALSALPFPEKTKFETKGESKSLAIAAASIISRYAFVKYMDQLARK 258


>gi|241154557|ref|XP_002407329.1| ribonuclease HI large subunit, putative [Ixodes scapularis]
 gi|215494090|gb|EEC03731.1| ribonuclease HI large subunit, putative [Ixodes scapularis]
          Length = 306

 Score = 76.3 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 7/115 (6%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI 75
            K+   + G+DE GRG + GP+V                 G  DSK ++ +KREEL   +
Sbjct: 24  AKSYPCMLGVDEAGRGPVLGPMVYGIAYCPVEFEEDLKRLGFADSKTLTEEKREELVGVM 83

Query: 76  TSSAI---ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
              +      +   S   I  H ++ +       + ++   + + AL DG  + E
Sbjct: 84  EQRSESLGWMVEVISPTVICNHMLNMSKYSLNAISHDSAIGLIKQALDDGVCVTE 138


>gi|282910715|ref|ZP_06318518.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus WBG10049]
 gi|295427627|ref|ZP_06820259.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297591419|ref|ZP_06950057.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MN8]
 gi|282325320|gb|EFB55629.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus WBG10049]
 gi|295127985|gb|EFG57619.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297576305|gb|EFH95021.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MN8]
 gi|312438484|gb|ADQ77555.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TCH60]
          Length = 329

 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 31/211 (14%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR 68
            LE  +       + G DE G G   GP+ V A  +   ++P     G++DSKK++  K 
Sbjct: 102 SLEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKI 160

Query: 69  EELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSA 118
            EL E++ +    +++++ +  +         +  + A+ H  A++N+            
Sbjct: 161 VELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYI 220

Query: 119 LIDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
           +ID  +  E           LP +     KG+S SL+IA ASII++      M    K  
Sbjct: 221 VIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFITYMDQISK-- 278

Query: 169 PDYGFDSHVGYPTAKHQQV---IKEKGPSCI 196
            +       G            IK  G S +
Sbjct: 279 -NINMTIPKGAGAKVDVIAAKIIKNYGISRL 308


>gi|255718283|ref|XP_002555422.1| KLTH0G08976p [Lachancea thermotolerans]
 gi|238936806|emb|CAR24985.1| KLTH0G08976p [Lachancea thermotolerans]
          Length = 342

 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 85/234 (36%), Gaps = 42/234 (17%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN------DSKKISHK 66
           E+   +R+     + G+DE GRG + GP+V              +       DSKK++  
Sbjct: 68  EVPQQIRDSGCAVILGVDEAGRGPVLGPMVYGISYCTREYQDEVLKKRYAFDDSKKLTDP 127

Query: 67  KREELYEKI----TSSAIISISSASHQYI----------DKHNIHKATLD---AIYHAVE 109
            R +L++++          + +  S   I            +N+++   D   A+   V 
Sbjct: 128 VRRDLFQRMYTGEIDQVGYATTCISACDISSGMLRFPPEKNYNLNEQAHDVTIALIRGVL 187

Query: 110 NLQVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRL 160
              V      +D    P     +   +          K DS+   ++ AS++AKVTRD L
Sbjct: 188 ERGVAVEHVYVDTVGPPATYQRKLEGLFPSIKFTVAKKADSLFCVVSVASVVAKVTRDVL 247

Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH-------RLTFRPLRNL 207
           + +   + PD       GYP+            + +        R +++  + L
Sbjct: 248 IELLRAR-PD--EVLGSGYPSDAKTTAWLRSNRTALFGWPLQTVRFSWQTSQTL 298


>gi|323346904|gb|EGA81183.1| Rnh201p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 307

 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 89/235 (37%), Gaps = 47/235 (20%)

Query: 16  AMVREKNMWPVA-GIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKR 68
           + + E+N  P+  GIDE GRG + GP+V A                +  +DSKK++   R
Sbjct: 24  SALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83

Query: 69  EELYEKI---------TSSAIISISSAS-----------HQYIDKHNIHKATLDAIYHAV 108
             L+ KI            A   I+                Y      H  T+ A+   V
Sbjct: 84  RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTM-ALIDGV 142

Query: 109 ENLQVIPRSALIDGRSIP--------EDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDR 159
               V      +D    P        +  P   F V  K DS+   ++ AS++AKVTRD 
Sbjct: 143 IKQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRDI 202

Query: 160 LMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK------GPSCIHRLTFRPLRNL 207
           L+    K+ PD       GYP+  K    +K         P+ + R +++  + L
Sbjct: 203 LVESL-KRDPD--EILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTL 254


>gi|315658551|ref|ZP_07911423.1| ribonuclease HIII [Staphylococcus lugdunensis M23590]
 gi|315496880|gb|EFU85203.1| ribonuclease HIII [Staphylococcus lugdunensis M23590]
          Length = 310

 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 24/165 (14%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---SA 79
            G DE G G   GP+ V A  +  +++      G++DSKK++  K  +L E++ +    +
Sbjct: 94  IGSDEAGSGDYFGPLTVCAAYVTQSHVAILKTLGVDDSKKLTDTKIIDLAEQLVTFIPHS 153

Query: 80  IISISSASHQYIDKHNIHKATLDAIYH--AVENL--QVIPR---SALIDGRSIPE----- 127
           ++++ +  +         +  + A+ H  A++N+  ++ P      +ID  +  E     
Sbjct: 154 LLTLDNIKYNERQALGWSQVKMKAVLHNEAIKNVTQKIHPDNIDYIVIDQFAQREVYQHY 213

Query: 128 -----DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                  P +     KG+S SL+IAAASII++    + M    +K
Sbjct: 214 ALSALPFPEKTKFETKGESKSLAIAAASIISRYAFVKYMDQLARK 258


>gi|291533380|emb|CBL06493.1| Ribonuclease HII [Megamonas hypermegale ART12/1]
          Length = 101

 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 27/42 (64%)

Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI 53
          +  E   R      +AG+DEVGRG LAGPVVVA++IL  N +
Sbjct: 56 YTFENECRANGYKLIAGVDEVGRGPLAGPVVVASVILPENFL 97


>gi|151944462|gb|EDN62740.1| Rnh2A [Saccharomyces cerevisiae YJM789]
 gi|259149289|emb|CAY82531.1| Rnh201p [Saccharomyces cerevisiae EC1118]
          Length = 307

 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 89/235 (37%), Gaps = 47/235 (20%)

Query: 16  AMVREKNMWPVA-GIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKR 68
           + + E+N  P+  GIDE GRG + GP+V A                +  +DSKK++   R
Sbjct: 24  SALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83

Query: 69  EELYEKI---------TSSAIISISSAS-----------HQYIDKHNIHKATLDAIYHAV 108
             L+ KI            A   I+                Y      H  T+ A+   V
Sbjct: 84  RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTM-ALIDGV 142

Query: 109 ENLQVIPRSALIDGRSIP--------EDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDR 159
               V      +D    P        +  P   F V  K DS+   ++ AS++AKVTRD 
Sbjct: 143 IKQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRDI 202

Query: 160 LMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK------GPSCIHRLTFRPLRNL 207
           L+    K+ PD       GYP+  K    +K         P+ + R +++  + L
Sbjct: 203 LVESL-KRDPD--EILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTL 254


>gi|323303245|gb|EGA57043.1| Rnh201p [Saccharomyces cerevisiae FostersB]
          Length = 307

 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 57/234 (24%), Positives = 89/234 (38%), Gaps = 46/234 (19%)

Query: 16  AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKRE 69
           A++ +K+   + GIDE GRG + GP+V A                +  +DSKK++   R 
Sbjct: 25  ALLEQKDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIRR 84

Query: 70  ELYEKI---------TSSAIISISSAS-----------HQYIDKHNIHKATLDAIYHAVE 109
            L+ KI            A   I+                Y      H  T+ A+   V 
Sbjct: 85  MLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTM-ALIDGVI 143

Query: 110 NLQVIPRSALIDGRSIP--------EDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRL 160
              V      +D    P        +  P   F V  K DS+   ++ AS++AKVTRD L
Sbjct: 144 KQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRDIL 203

Query: 161 MRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK------GPSCIHRLTFRPLRNL 207
           +    K+ PD       GYP+  K    +K         P+ + R +++  + L
Sbjct: 204 VESL-KRDPD--EILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTL 254


>gi|6324257|ref|NP_014327.1| Rnh201p [Saccharomyces cerevisiae S288c]
 gi|1730743|sp|P53942|RNH2A_YEAST RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
           AltName: Full=RNase H(201); AltName: Full=RNase H(35);
           AltName: Full=Ribonuclease HI large subunit; Short=RNase
           HI large subunit; AltName: Full=Ribonuclease HI subunit
           A
 gi|791114|emb|CAA60188.1| unknown [Saccharomyces cerevisiae]
 gi|1301957|emb|CAA95946.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|190409061|gb|EDV12326.1| ribonuclease HI 35 large subunit [Saccharomyces cerevisiae RM11-1a]
 gi|207341690|gb|EDZ69676.1| YNL072Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|285814579|tpg|DAA10473.1| TPA: Rnh201p [Saccharomyces cerevisiae S288c]
 gi|323331967|gb|EGA73379.1| Rnh201p [Saccharomyces cerevisiae AWRI796]
 gi|323352575|gb|EGA85074.1| Rnh201p [Saccharomyces cerevisiae VL3]
          Length = 307

 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 89/235 (37%), Gaps = 47/235 (20%)

Query: 16  AMVREKNMWPVA-GIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKR 68
           + + E+N  P+  GIDE GRG + GP+V A                +  +DSKK++   R
Sbjct: 24  SALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83

Query: 69  EELYEKI---------TSSAIISISSAS-----------HQYIDKHNIHKATLDAIYHAV 108
             L+ KI            A   I+                Y      H  T+ A+   V
Sbjct: 84  RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTM-ALIDGV 142

Query: 109 ENLQVIPRSALIDGRSIP--------EDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDR 159
               V      +D    P        +  P   F V  K DS+   ++ AS++AKVTRD 
Sbjct: 143 IKQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRDI 202

Query: 160 LMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK------GPSCIHRLTFRPLRNL 207
           L+    K+ PD       GYP+  K    +K         P+ + R +++  + L
Sbjct: 203 LVESL-KRDPD--EILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTL 254


>gi|323335818|gb|EGA77097.1| Rnh201p [Saccharomyces cerevisiae Vin13]
          Length = 307

 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 89/235 (37%), Gaps = 47/235 (20%)

Query: 16  AMVREKNMWPVA-GIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKR 68
           + + E+N  P+  GIDE GRG + GP+V A                +  +DSKK++   R
Sbjct: 24  SALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83

Query: 69  EELYEKI---------TSSAIISISSAS-----------HQYIDKHNIHKATLDAIYHAV 108
             L+ KI            A   I+                Y      H  T+ A+   V
Sbjct: 84  RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTM-ALIDGV 142

Query: 109 ENLQVIPRSALIDGRSIP--------EDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDR 159
               V      +D    P        +  P   F V  K DS+   ++ AS++AKVTRD 
Sbjct: 143 IKQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRDI 202

Query: 160 LMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK------GPSCIHRLTFRPLRNL 207
           L+    K+ PD       GYP+  K    +K         P+ + R +++  + L
Sbjct: 203 LVESL-KRDPD--EILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTL 254


>gi|256274456|gb|EEU09358.1| Rnh201p [Saccharomyces cerevisiae JAY291]
          Length = 307

 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 57/234 (24%), Positives = 89/234 (38%), Gaps = 46/234 (19%)

Query: 16  AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKRE 69
           A++ +K+   + GIDE GRG + GP+V A                +  +DSKK++   R 
Sbjct: 25  ALLEQKDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIRR 84

Query: 70  ELYEKI---------TSSAIISISSAS-----------HQYIDKHNIHKATLDAIYHAVE 109
            L+ KI            A   I+                Y      H  T+ A+   V 
Sbjct: 85  MLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTM-ALIDGVI 143

Query: 110 NLQVIPRSALIDGRSIP--------EDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRL 160
              V      +D    P        +  P   F V  K DS+   ++ AS++AKVTRD L
Sbjct: 144 KQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRDIL 203

Query: 161 MRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK------GPSCIHRLTFRPLRNL 207
           +    K+ PD       GYP+  K    +K         P+ + R +++  + L
Sbjct: 204 VESL-KRDPD--EILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTL 254


>gi|293553123|ref|ZP_06673761.1| ribonuclease hiii [Enterococcus faecium E1039]
 gi|291602714|gb|EFF32928.1| ribonuclease hiii [Enterococcus faecium E1039]
          Length = 305

 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 71/181 (39%), Gaps = 27/181 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           V G DEVG G+  GP+ V A  +  + +      G+ DSK+++  +  +L + +  +   
Sbjct: 91  VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELTDSQIIQLADILKKTIPY 150

Query: 82  SISSASHQYIDKH-------NIHKATLDAIYHAVEN--LQVIPRSALIDGRSIPED---- 128
            +   S +  ++         +  A  +   H +        P + LID  +   +    
Sbjct: 151 KLLVLSPEKYNEIQPKYNAVRMKVALHNQTIHLLLKKIAPEKPEAILIDQFTPEANFKKY 210

Query: 129 -------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                  L  + + V KG+   L++AAASII   +R   +    K   + G     G  T
Sbjct: 211 ARLEKNQLQEKLYFVTKGEQYHLAVAAASII---SRASFLEELDKASAEAGITLPSGAGT 267

Query: 182 A 182
            
Sbjct: 268 K 268


>gi|323442368|gb|EGA99997.1| ribonuclease HIII [Staphylococcus aureus O46]
          Length = 318

 Score = 75.9 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 31/210 (14%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69
           LE  +       + G DE G G   GP+ V A  +   ++P     G++DSKK++  K  
Sbjct: 92  LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150

Query: 70  ELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSAL 119
           EL E++ +    +++++ +  +         +  + A+ H  A++N+            +
Sbjct: 151 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIV 210

Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
           ID  +  E           LP +     KG+S SL+IA ASII++      M    K   
Sbjct: 211 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK--- 267

Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPSCI 196
           +       G            IK+ G S +
Sbjct: 268 NINMTIPKGAGAKVDVIAAKIIKKYGISRL 297


>gi|302332748|gb|ADL22941.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 312

 Score = 75.9 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 31/210 (14%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69
           LE  +       + G DE G G   GP+ V A  +   ++P     G++DSKK++  K  
Sbjct: 86  LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 144

Query: 70  ELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSAL 119
           EL E++ +    +++++ +  +         +  + A+ H  A++N+            +
Sbjct: 145 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLKKIDSSQLDYIV 204

Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
           ID  +  E           LP +     KG+S SL+IA ASII++      M    K   
Sbjct: 205 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK--- 261

Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPSCI 196
           +       G            IK+ G S +
Sbjct: 262 NINMTIPKGAGAKVDVIAAKIIKKYGISRL 291


>gi|298694427|gb|ADI97649.1| probable ribonuclease HIII [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 318

 Score = 75.9 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 83/210 (39%), Gaps = 31/210 (14%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69
            E  +       + G DE G G   GP+ V A  +   ++P     G++DSKK++  K  
Sbjct: 92  FEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150

Query: 70  ELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSAL 119
           EL E++ +    +++++ +  +         +  + A+ H  A++N+            +
Sbjct: 151 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIV 210

Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
           ID  +  E           LP +     KG+S SL+IA ASII++      M    K   
Sbjct: 211 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK--- 267

Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPSCI 196
           +       G            IK+ G S +
Sbjct: 268 NINMTIPKGAGAKVDVIAAKIIKKYGISRL 297


>gi|313230305|emb|CBY08009.1| unnamed protein product [Oikopleura dioica]
          Length = 195

 Score = 75.9 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 64/181 (35%), Gaps = 30/181 (16%)

Query: 41  VVVAAIIL-----DPNNIPFGINDSKKISHKKREELYEKITSSAIISI--SSASHQYIDK 93
           +V AA               G NDSK++    RE + + I  S  I          YI K
Sbjct: 1   MVYAAAFCAITEHQKVRDECGANDSKQLEEVDRERMLKSIDKSGWIGYTGVVLPPAYISK 60

Query: 94  HNI-----------HKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI----- 137
             +           H   +  I  A++   +  +S  +D    PE    +          
Sbjct: 61  SMLRRIKYNLNEMSHDTAISMIRRAIDYHGINVKSVFVDTVGKPEKYQDKLLRYFPQLSI 120

Query: 138 ----KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG--FDSHVGYP-TAKHQQVIKE 190
               K D+    + AASIIAKVTRD+L+       P      +   GYP   K +  I++
Sbjct: 121 KVESKADATYPIVGAASIIAKVTRDKLVHNWDHVEPSVNKSIEVGSGYPGDPKTKNWIRQ 180

Query: 191 K 191
            
Sbjct: 181 H 181


>gi|49483303|ref|YP_040527.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425191|ref|ZP_05601617.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427854|ref|ZP_05604252.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430489|ref|ZP_05606871.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433251|ref|ZP_05609609.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus E1410]
 gi|257436090|ref|ZP_05612137.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M876]
 gi|282903688|ref|ZP_06311576.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C160]
 gi|282905457|ref|ZP_06313312.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282913915|ref|ZP_06321702.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M899]
 gi|282918838|ref|ZP_06326573.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C427]
 gi|282923960|ref|ZP_06331636.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C101]
 gi|283957883|ref|ZP_06375334.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293500950|ref|ZP_06666801.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 58-424]
 gi|293509907|ref|ZP_06668616.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M809]
 gi|293526494|ref|ZP_06671179.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M1015]
 gi|73917851|sp|Q6GHU5|RNH3_STAAR RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|49241432|emb|CAG40116.1| putative ribonuclease [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257272167|gb|EEV04299.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274695|gb|EEV06182.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278617|gb|EEV09236.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281344|gb|EEV11481.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus E1410]
 gi|257284372|gb|EEV14492.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M876]
 gi|282313932|gb|EFB44324.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C101]
 gi|282316648|gb|EFB47022.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C427]
 gi|282321983|gb|EFB52307.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M899]
 gi|282330749|gb|EFB60263.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595306|gb|EFC00270.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C160]
 gi|283790032|gb|EFC28849.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290920566|gb|EFD97629.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M1015]
 gi|291095955|gb|EFE26216.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 58-424]
 gi|291467357|gb|EFF09874.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M809]
 gi|315193810|gb|EFU24205.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus CGS00]
          Length = 312

 Score = 75.9 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 31/211 (14%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR 68
            LE  +       + G DE G G   GP+ V A  +   ++P     G++DSKK++  K 
Sbjct: 85  SLEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKI 143

Query: 69  EELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSA 118
            EL E++ +    +++++ +  +         +  + A+ H  A++N+            
Sbjct: 144 VELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYI 203

Query: 119 LIDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
           +ID  +  E           LP +     KG+S SL+IA ASII++      M    K  
Sbjct: 204 VIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFITYMDQISK-- 261

Query: 169 PDYGFDSHVGYPTAKHQQV---IKEKGPSCI 196
            +       G            IK  G S +
Sbjct: 262 -NINMTIPKGAGAKVDVIAAKIIKNYGISRL 291


>gi|295706825|ref|YP_003599900.1| ribonuclease HIII [Bacillus megaterium DSM 319]
 gi|294804484|gb|ADF41550.1| ribonuclease HIII [Bacillus megaterium DSM 319]
          Length = 304

 Score = 75.9 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 31/199 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81
           V G DEVG G   GP+ V A  +    +P     G+ DSK+++  K  E+ +++ SS   
Sbjct: 89  VIGSDEVGTGDYFGPMTVVAAYVQKEQLPLLKELGVRDSKELTDAKIIEIAKQLVSSIPY 148

Query: 82  SISSASHQYID---KHNIHKATLDAIYH--AVENL-----QVIPRSALID---------- 121
           S+    ++  +   +  + +  + A+ H  A+ N+        P + LID          
Sbjct: 149 SLLVLHNEKYNAFQEKGMSQGKMKALLHNKALSNVLKKLDPEKPDAILIDQFVEKNTYYK 208

Query: 122 -GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
                 E +    F   KG+S+ LS+AAASIIA+    + M +  +K    G     G  
Sbjct: 209 HVVKEKEIIKENVFFSTKGESVHLSVAAASIIARYAFLKQMDLLTEK---TGMVIPRGAG 265

Query: 181 TAKHQQV---IKEKGPSCI 196
                     IK+ G + +
Sbjct: 266 AQVDIAAAKIIKKHGVNAL 284


>gi|81428005|ref|YP_395004.1| ribonuclease HIII [Lactobacillus sakei subsp. sakei 23K]
 gi|78609646|emb|CAI54692.1| Ribonuclease HIII (RNase HIII) [Lactobacillus sakei subsp. sakei
           23K]
          Length = 305

 Score = 75.9 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 24/168 (14%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79
           W V G DEVG G+  GP+ +AA+ +   N+      G+ DSK ++  + +++  K+ +  
Sbjct: 90  WSVIGSDEVGNGSYFGPLTIAAVYVSQENLSFVRNLGVADSKTLTDAQIDQMAIKMMTKL 149

Query: 80  IISISSASHQYIDKHNIHKAT--LDAIYHAVENLQV-------IPRSALIDG-------- 122
              I +   Q  ++ +       + A+ H    L+V        P+  LID         
Sbjct: 150 PYHIVNIMPQKYNQVHEQMNIEKMKAVSHNFALLKVLKKIQPDQPQGILIDQFEPRATYY 209

Query: 123 ---RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
              +  P  L    +   K +   L++AAASIIA+   +  M    K 
Sbjct: 210 RYLKDEPVVLRDNVYFTTKAEQFHLAVAAASIIARHQANLSMIELSKL 257


>gi|307103270|gb|EFN51532.1| hypothetical protein CHLNCDRAFT_140248 [Chlorella variabilis]
          Length = 259

 Score = 75.5 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 69/197 (35%), Gaps = 38/197 (19%)

Query: 41  VVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI---ISISSASHQYIDK 93
           +V            +    G  DSK ++ +KR+ L+  I +            S  +I  
Sbjct: 1   MVYGLAWAPISRRKDLKAMGFADSKTLTEEKRDHLFGVIQAEGGMLGYQADVLSAAFISG 60

Query: 94  HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV-IKGDSISLSIAAASII 152
             + +  +     A E+   +  + L  G  + +  P   F V  K DS    ++AASI+
Sbjct: 61  KMLGRERVSLNALAFESTCALIEAVLARGERLSQRFPGVQFVVEAKADSTYPIVSAASIV 120

Query: 153 AKVTRDRLMRI--------------------AHKKYPDYGFDSHVGYP----TAKHQQV- 187
           AKVTRDR +R                     A      +G     GYP    T +  +  
Sbjct: 121 AKVTRDRTLRDFVLGEMAASLDGGSSSSDGCAAALSTQFG----SGYPADPQTKRWLEAS 176

Query: 188 IKE-KGPSCIHRLTFRP 203
           I    G   + R ++  
Sbjct: 177 INRVFGFPSLVRFSWST 193


>gi|47458958|ref|YP_015820.1| ribonuclease HII [Mycoplasma mobile 163K]
 gi|47458286|gb|AAT27609.1| ribonuclease HII [Mycoplasma mobile 163K]
          Length = 227

 Score = 75.5 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 72/176 (40%), Gaps = 29/176 (16%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
           N +   G DE G G    P+V  A+ L+P NI       I DSK ++ KK +E+ +++  
Sbjct: 4   NEYVTIGSDETGVGDYLSPIVACAVFLNPENISKINKLDIKDSKLLTDKKIKEIAKELKK 63

Query: 78  SAIISISSAS-------HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
               SI+  S       +++ + H I         + +E         +ID  S  +++ 
Sbjct: 64  LVSHSINYFSQKGYNNLNKFFNAHEIKMFLHLKSINFLEQKHQNIDYVIIDAFSDEKNID 123

Query: 131 CQAFAVI------------------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
                ++                  K +S+SLS+A ASI+A+      M   + KY
Sbjct: 124 KYIEKLVNNKKFMLQNIKSEKKIIQKAESLSLSVACASILARNYLLEKMEEQNIKY 179


>gi|283470350|emb|CAQ49561.1| ribonuclease hiii [Staphylococcus aureus subsp. aureus ST398]
          Length = 318

 Score = 75.5 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 84/211 (39%), Gaps = 31/211 (14%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR 68
            LE  +       + G DE G G   GP+ V A  +   ++P     G++DSKK++  K 
Sbjct: 91  SLEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKI 149

Query: 69  EELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSA 118
            EL E++ +    +++++ +  +         +  + A+ H  A++N+            
Sbjct: 150 VELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYI 209

Query: 119 LIDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
           +ID  +  E           LP +     KG+S SL+IA ASII++      M    K  
Sbjct: 210 VIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK-- 267

Query: 169 PDYGFDSHVGYPTAKHQQV---IKEKGPSCI 196
            +       G            IK+ G S +
Sbjct: 268 -NINMTIPKGAGAKVDVIAAKIIKKYGLSRL 297


>gi|217964706|ref|YP_002350384.1| ribonuclease hiii [Listeria monocytogenes HCC23]
 gi|217333976|gb|ACK39770.1| ribonuclease hiii [Listeria monocytogenes HCC23]
 gi|307570733|emb|CAR83912.1| rnhC [Listeria monocytogenes L99]
          Length = 293

 Score = 75.5 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 30/189 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78
           V G DEVG G   GP+ V A  +D   IP     G+ DSK +   +   + EKI      
Sbjct: 78  VIGSDEVGTGDFFGPITVCAAYVDAEMIPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137

Query: 79  AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123
           +++   +  +  + K  +++  + A     A+EN+      + P + LID          
Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLTPIKPEAILIDQFAEKNTYYR 197

Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
                P  +    F   K + + LS+AAASIIA   R + ++       + G     G  
Sbjct: 198 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDAMSKEVGIPLPKGAG 254

Query: 181 TAKHQQVIK 189
              H   + 
Sbjct: 255 --PHVDAVA 261


>gi|229543611|ref|ZP_04432671.1| ribonuclease HIII [Bacillus coagulans 36D1]
 gi|229328031|gb|EEN93706.1| ribonuclease HIII [Bacillus coagulans 36D1]
          Length = 311

 Score = 75.1 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 76/199 (38%), Gaps = 31/199 (15%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
               V G DEVG G   GP+ V +  ++   +P     G+ DSK ++  +   L +++ +
Sbjct: 91  GELSVIGSDEVGTGDFFGPMTVVSCYVEKKQLPLLKELGVKDSKGLTDSQIAGLAKELLT 150

Query: 78  SAIISISSASHQYIDKHNIH-----KATLDAIYHAVEN-----LQVIPRSALIDGR---- 123
               S+    ++  ++         K        A+ N         P + LID      
Sbjct: 151 FVPYSLLILPNEKYNRLQQSGMSQGKIKALLHNRALYNTAQKIAPAKPDAILIDQFAEAS 210

Query: 124 SIPEDLPCQAFAV-------IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
           +    L  +   +        KG+S+ L++AAASI+A+    R      K+    GF   
Sbjct: 211 TYYRYLQNEKIVMRDGVYFSTKGESVHLAVAAASILARYAFVREFEKLSKEA---GFVLP 267

Query: 177 VGYPTAKHQQV---IKEKG 192
            G      +     IKEKG
Sbjct: 268 KGAGAQVDRAAARLIKEKG 286


>gi|154686997|ref|YP_001422158.1| ribonuclease HIII [Bacillus amyloliquefaciens FZB42]
 gi|166226670|sp|A7Z7F1|RNH3_BACA2 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|154352848|gb|ABS74927.1| RnhC [Bacillus amyloliquefaciens FZB42]
          Length = 313

 Score = 75.1 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 24/168 (14%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79
             V G DEVG G   GP+ VA    D   +      G+ DSK +   +  E+ + +  + 
Sbjct: 94  MSVIGSDEVGTGDYFGPITVACAYADKTKLSLMKELGVKDSKDLKDPQIIEIAKLLIKTI 153

Query: 80  IISISSASHQYIDKHNIHKATL-----DAIYHAVENL-----QVIPRSALIDGRSIP--- 126
             S+    ++  ++      +           A+ NL      V P + LID  + P   
Sbjct: 154 PYSLLVLKNEKYNQMQEKGMSQGKMKALLHNQAISNLLRKMNGVKPEAILIDQFAEPGIY 213

Query: 127 -------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                  + +  + F   K +SI LS+AAASIIA+ +    M    ++
Sbjct: 214 FKHLSGRDIVKEKTFFSTKAESIHLSVAAASIIARYSFLIEMDKLSRE 261


>gi|251810588|ref|ZP_04825061.1| ribonuclease HIII [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876412|ref|ZP_06285279.1| ribonuclease HIII [Staphylococcus epidermidis SK135]
 gi|251805748|gb|EES58405.1| ribonuclease HIII [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295437|gb|EFA87964.1| ribonuclease HIII [Staphylococcus epidermidis SK135]
          Length = 308

 Score = 75.1 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 28/171 (16%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS---SA 79
            G DE G G   GP+ V A  +  ++I      G++DSKK+S  K  +L E++ +    +
Sbjct: 91  IGSDEAGSGDYFGPLTVCAAYVSQSHIKILKELGVDDSKKLSDTKIVDLAEQLITFIPHS 150

Query: 80  IISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSIPE----- 127
           ++++ +  +         +  + A+ H  A++N+     Q      +ID  +  E     
Sbjct: 151 LLTLDNVKYNERQSIGWSQVKMKAVLHNEAIKNVLQKIEQDQLDYIVIDQFAKREVYQHY 210

Query: 128 -----DLPCQAFAVIKGDSISLSIAAASIIAKVTR----DRLMRIAHKKYP 169
                  P +     KG+S SL+IAAASII++       D + +  H + P
Sbjct: 211 ALSALPFPDKTKFETKGESKSLAIAAASIISRYAFVKHMDHISKKLHMEIP 261


>gi|242373372|ref|ZP_04818946.1| ribonuclease HIII [Staphylococcus epidermidis M23864:W1]
 gi|242348735|gb|EES40337.1| ribonuclease HIII [Staphylococcus epidermidis M23864:W1]
          Length = 311

 Score = 75.1 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 80/194 (41%), Gaps = 30/194 (15%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS---SA 79
            G DE G G   GP+ V A  +   N       G++DSKK++  K  E+ E++ +    +
Sbjct: 95  IGSDEAGSGDYFGPLTVCAAYVSEKNAQVLKTLGVDDSKKLTDTKIVEIAEQLITFIPHS 154

Query: 80  IISISSASHQYIDKHNIHKATLDAIYH--AVENLQVIP-----RSALIDGRSIPE----- 127
           ++++ +  +    K    +  + A+ H  A++N+            +ID  +  E     
Sbjct: 155 LLTLDNVKYNERQKMGWSQVKMKAVLHNEAIKNVTQKIEIEDLDYIVIDQFAKREVYQHY 214

Query: 128 -----DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
                  P +     KG+S SL+IAAASII++    + M    +       D   G    
Sbjct: 215 ALSELPFPKKTKFETKGESKSLAIAAASIISRYAFVKHMDHITR---QINMDVPKGASNK 271

Query: 183 KHQ---QVIKEKGP 193
                 +VI++ G 
Sbjct: 272 VDLFAAKVIQKYGI 285


>gi|223936443|ref|ZP_03628355.1| ribonuclease HIII [bacterium Ellin514]
 gi|223894961|gb|EEF61410.1| ribonuclease HIII [bacterium Ellin514]
          Length = 329

 Score = 75.1 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 81/200 (40%), Gaps = 33/200 (16%)

Query: 8   ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKI 63
           +      E ++  + + P  G+DE G+G   GP+ VA + ++ +        GI DSK I
Sbjct: 76  QEAKLGYEEVLNPELLAPRLGVDESGKGDFFGPLCVAGVYVNESVVRAWKEAGIRDSKNI 135

Query: 64  -SHKKREELYEKITS-----SAIISISSASHQYIDKHNIHKATLDAIYHA--VENL---- 111
            S KK  EL E I       + ++ I + ++  +        TL A  HA  +ENL    
Sbjct: 136 SSDKKIRELAELIRETPGCVTTVVPIGNEAYNRLYAKMRSVNTLLAWGHARVIENLMGRQ 195

Query: 112 ---QVIPRSALIDGRSIPEDLPCQAFA----------VIKGDSISLSIAAASIIAKVTRD 158
              +  P  A+ D  +  +D   +A              K +   +++AAASI+A   RD
Sbjct: 196 QMMKPPPIRAISDQFAASKDTVAKALMNLGRQVELVQRHKAEE-DIAVAAASILA---RD 251

Query: 159 RLMRIAHKKYPDYGFDSHVG 178
             +         YG     G
Sbjct: 252 EFVSRLGTLEKQYGMGFPKG 271


>gi|253733626|ref|ZP_04867791.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728326|gb|EES97055.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TCH130]
          Length = 318

 Score = 75.1 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 31/210 (14%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69
           LE  +       + G DE G G   GP+ V A  +   ++P     G++DSKK++  K  
Sbjct: 92  LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150

Query: 70  ELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSAL 119
           EL E++ +    +++++ +  +         +  + A+ H  A++N+            +
Sbjct: 151 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIV 210

Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
           ID  +  E           LP +     KG+S SL+IA ASII++      M    K   
Sbjct: 211 IDQFAKREVYNHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK--- 267

Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPSCI 196
           +       G            IK+ G S +
Sbjct: 268 NINMTIPKGAGAKVDVIAAKIIKKYGLSRL 297


>gi|314938144|ref|ZP_07845449.1| ribonuclease HIII [Enterococcus faecium TX0133a04]
 gi|314943815|ref|ZP_07850550.1| ribonuclease HIII [Enterococcus faecium TX0133C]
 gi|314949774|ref|ZP_07853084.1| ribonuclease HIII [Enterococcus faecium TX0082]
 gi|314951182|ref|ZP_07854240.1| ribonuclease HIII [Enterococcus faecium TX0133A]
 gi|314994413|ref|ZP_07859697.1| ribonuclease HIII [Enterococcus faecium TX0133B]
 gi|314995609|ref|ZP_07860703.1| ribonuclease HIII [Enterococcus faecium TX0133a01]
 gi|313590197|gb|EFR69042.1| ribonuclease HIII [Enterococcus faecium TX0133a01]
 gi|313591185|gb|EFR70030.1| ribonuclease HIII [Enterococcus faecium TX0133B]
 gi|313596661|gb|EFR75506.1| ribonuclease HIII [Enterococcus faecium TX0133A]
 gi|313597539|gb|EFR76384.1| ribonuclease HIII [Enterococcus faecium TX0133C]
 gi|313642491|gb|EFS07071.1| ribonuclease HIII [Enterococcus faecium TX0133a04]
 gi|313643847|gb|EFS08427.1| ribonuclease HIII [Enterococcus faecium TX0082]
          Length = 313

 Score = 75.1 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 27/181 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           V G DEVG G+  GP+ V A  +  + +      G+ DSK++   +  +L + +  +   
Sbjct: 99  VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKKTIPY 158

Query: 82  SISSASHQYID----KHNIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPED---- 128
            +   S +  +    K+N  +  +     A+  L        P + LID  +   +    
Sbjct: 159 KLLVLSPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIEPEKPEAILIDQFTPEANFKKY 218

Query: 129 -------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                  L  + + V KG+   L++AAASII   +R   +   HK   + G     G  T
Sbjct: 219 ARLEKNQLQEKLYFVTKGEQYHLAVAAASII---SRASFLEELHKASAEAGITLPSGAGT 275

Query: 182 A 182
            
Sbjct: 276 K 276


>gi|172058184|ref|YP_001814644.1| ribonuclease HIII [Exiguobacterium sibiricum 255-15]
 gi|229564305|sp|B1YJY9|RNH3_EXIS2 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|171990705|gb|ACB61627.1| ribonuclease HIII [Exiguobacterium sibiricum 255-15]
          Length = 306

 Score = 75.1 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 70/199 (35%), Gaps = 29/199 (14%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79
           W V G DEVG+G   GP+VV A  +D   I      G+ DSK +S  +   +   + +  
Sbjct: 87  WSVVGSDEVGKGDFFGPLVVVAAYVDKTKIELVRELGVRDSKNVSDPEIRTIARDLHAVI 146

Query: 80  IISISSASHQYIDKHNIHKA----TLDAIYHAVEN----LQVIPRSALIDGRSIP----- 126
                   +   ++          T      A+      L   P++ LID  +       
Sbjct: 147 PYEYRILHNPDYNRMQRTMTQGKMTALLHNSALNGLLTRLDEPPQAILIDQFAEKAVYYK 206

Query: 127 ------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
                   +    +   K + I +++AAASI+A+    + M    +     G +   G  
Sbjct: 207 HLSGETNQVKDNVYFSTKAEGIHVAVAAASILARAIFLKEMDQLSR---QTGTEIPKGAG 263

Query: 181 TAKHQQV---IKEKGPSCI 196
               Q     +   GP  +
Sbjct: 264 AKVDQVAASLLLRYGPERL 282


>gi|297620990|ref|YP_003709127.1| Ribonuclease HIII [Waddlia chondrophila WSU 86-1044]
 gi|297376291|gb|ADI38121.1| Ribonuclease HIII [Waddlia chondrophila WSU 86-1044]
          Length = 303

 Score = 75.1 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 25/167 (14%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAIIS 82
            GIDE G+G   GP+ +A +  + + I      G+ DSK ++ K   +L ++I     ++
Sbjct: 96  IGIDEAGKGDFFGPLCIAGVYAEGDAISELKSAGVRDSKNMTEKNVFKLAKEIRKRCEVT 155

Query: 83  ISSASHQYIDKH-----NIHKATLDAIYHAVENL--QVIPRSALID---------GRSIP 126
           +   +    ++      N++         A+ENL  +   ++ +ID         G    
Sbjct: 156 VVRMNPLKYNELYGKFKNLNHLLAWGHATAIENLVSKTGCKNVIIDQFAAEQVVIGALKK 215

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTR----DRLMRIAHKKYP 169
           + L        +G+   L +AAASI+A+       D+L +      P
Sbjct: 216 KKLEVNLTQRHRGEE-DLVVAAASILAREAFVTELDKLSKQWEMTLP 261


>gi|269940634|emb|CBI49013.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TW20]
          Length = 318

 Score = 75.1 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 82/210 (39%), Gaps = 31/210 (14%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69
           LE  +       + G DE G G   GP+ V A  +   ++P     G++DSKK++  K  
Sbjct: 92  LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150

Query: 70  ELYEKITS---SAIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSAL 119
           EL E++ +    +++++ +  +         +  + A     A++N+            +
Sbjct: 151 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAALHNEAIKNVLKKIDSSQLDYIV 210

Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
           ID  +  E           LP +     KG+S SL+IA ASII++      M    K   
Sbjct: 211 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK--- 267

Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPSCI 196
           +       G            IK+ G S +
Sbjct: 268 NINMTIPKGAGAKVDVIAAKIIKKYGLSRL 297


>gi|161509314|ref|YP_001574973.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|282919917|ref|ZP_06327646.1| ribonuclease HIII [Staphylococcus aureus A9765]
 gi|304381303|ref|ZP_07363956.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|160368123|gb|ABX29094.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|282594633|gb|EFB99617.1| ribonuclease HIII [Staphylococcus aureus A9765]
 gi|304340286|gb|EFM06227.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|320141045|gb|EFW32892.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320143102|gb|EFW34892.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329313808|gb|AEB88221.1| Ribonuclease HIII [Staphylococcus aureus subsp. aureus T0131]
 gi|329728888|gb|EGG65309.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 21193]
 gi|329730784|gb|EGG67163.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 21189]
          Length = 318

 Score = 75.1 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 82/210 (39%), Gaps = 31/210 (14%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69
           LE  +       + G DE G G   GP+ V A  +   ++P     G++DSKK++  K  
Sbjct: 92  LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150

Query: 70  ELYEKITS---SAIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSAL 119
           EL E++ +    +++++ +  +         +  + A     A++N+            +
Sbjct: 151 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAALHNEAIKNVLEKIDSSQLDYIV 210

Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
           ID  +  E           LP +     KG+S SL+IA ASII++      M    K   
Sbjct: 211 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK--- 267

Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPSCI 196
           +       G            IK+ G S +
Sbjct: 268 NINMTIPKGAGAKVDVIAAKIIKKYGLSRL 297


>gi|57651749|ref|YP_186013.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus COL]
 gi|87161110|ref|YP_493737.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194841|ref|YP_499639.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151221263|ref|YP_001332085.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus str. Newman]
 gi|221140462|ref|ZP_03564955.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|258451837|ref|ZP_05699858.1| ribonuclease HIII [Staphylococcus aureus A5948]
 gi|262051696|ref|ZP_06023915.1| ribonuclease HIII [Staphylococcus aureus 930918-3]
 gi|284024065|ref|ZP_06378463.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 132]
 gi|294848130|ref|ZP_06788877.1| ribonuclease HIII [Staphylococcus aureus A9754]
 gi|73917848|sp|Q5HGU4|RNH3_STAAC RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|122539781|sp|Q2FZD7|RNH3_STAA8 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|123486345|sp|Q2FHU1|RNH3_STAA3 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|172048827|sp|A6QG41|RNH3_STAAE RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|57285935|gb|AAW38029.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus COL]
 gi|87127084|gb|ABD21598.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202399|gb|ABD30209.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150374063|dbj|BAF67323.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus str. Newman]
 gi|257860445|gb|EEV83272.1| ribonuclease HIII [Staphylococcus aureus A5948]
 gi|259160431|gb|EEW45456.1| ribonuclease HIII [Staphylococcus aureus 930918-3]
 gi|294824930|gb|EFG41352.1| ribonuclease HIII [Staphylococcus aureus A9754]
 gi|302750963|gb|ADL65140.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|315196863|gb|EFU27206.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus CGS01]
          Length = 312

 Score = 75.1 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 82/210 (39%), Gaps = 31/210 (14%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69
           LE  +       + G DE G G   GP+ V A  +   ++P     G++DSKK++  K  
Sbjct: 86  LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 144

Query: 70  ELYEKITS---SAIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSAL 119
           EL E++ +    +++++ +  +         +  + A     A++N+            +
Sbjct: 145 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAALHNEAIKNVLEKIDSSQLDYIV 204

Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
           ID  +  E           LP +     KG+S SL+IA ASII++      M    K   
Sbjct: 205 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK--- 261

Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPSCI 196
           +       G            IK+ G S +
Sbjct: 262 NINMTIPKGAGAKVDVIAAKIIKKYGLSRL 291


>gi|308174559|ref|YP_003921264.1| ribonuclease HIII [Bacillus amyloliquefaciens DSM 7]
 gi|307607423|emb|CBI43794.1| ribonuclease HIII [Bacillus amyloliquefaciens DSM 7]
 gi|328554482|gb|AEB24974.1| ribonuclease HIII [Bacillus amyloliquefaciens TA208]
 gi|328912886|gb|AEB64482.1| ribonuclease HIII [Bacillus amyloliquefaciens LL3]
          Length = 313

 Score = 75.1 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 24/168 (14%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79
             V G DEVG G   GP+ VA    D   +      G+ DSK +   +  E+ + +  + 
Sbjct: 94  MSVIGSDEVGTGDYFGPITVACAYADKTKLSLMKELGVKDSKDLKDPQIIEIAKLLIKTI 153

Query: 80  IISISSASHQYIDKHNIHKATL-----DAIYHAVENL-----QVIPRSALIDGRSIP--- 126
             S+    ++  ++      +           A+ NL      V P + LID  + P   
Sbjct: 154 PYSLLVLKNEKYNQMQEKGMSQGKMKALLHNQAISNLLKKMNGVKPEAILIDQFAEPGIY 213

Query: 127 -------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                  + +  + F   K +SI LS+AAASIIA+ +    M    ++
Sbjct: 214 FKHLSGRDIVKEKTFFSTKAESIHLSVAAASIIARYSFLLEMDKLSRE 261


>gi|302036358|ref|YP_003796680.1| ribonuclease HIII (fragment) [Candidatus Nitrospira defluvii]
 gi|300604422|emb|CBK40754.1| Ribonuclease HIII (fragment) [Candidatus Nitrospira defluvii]
          Length = 219

 Score = 75.1 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 25/167 (14%)

Query: 27  AGIDEVGRGALAGPVVVAAII----LDPNNIPFGINDSKKISHKKREELYEKIT---SSA 79
            GIDE G+G   GP+V+AA+     L+ +     + DSKKIS  +  E+   I      +
Sbjct: 13  IGIDESGKGDYFGPLVIAAVFVTPALEQDLALMQVRDSKKISDGRILEMAPDIRLLCPHS 72

Query: 80  IISISSASHQYI--DKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSI---------P 126
           +++I    +  +     N+++        A+ENL  QV    A+ D              
Sbjct: 73  LVAIGPQRYNELYAKIKNLNRLLAWGHARALENLLQQVDCDLAIADQFGDERLILNALQE 132

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTR----DRLMRIAHKKYP 169
           +    +     K +S  L++AAASI+A+       DRL +      P
Sbjct: 133 KGKQIRLVQRTKAES-DLAVAAASILARADFLQRLDRLSQELSTTLP 178


>gi|69245129|ref|ZP_00603253.1| Ribonuclease HIII [Enterococcus faecium DO]
 gi|257879657|ref|ZP_05659310.1| ribonuclease HIII [Enterococcus faecium 1,230,933]
 gi|257890323|ref|ZP_05669976.1| ribonuclease HIII [Enterococcus faecium 1,231,410]
 gi|258614464|ref|ZP_05712234.1| ribonuclease HIII [Enterococcus faecium DO]
 gi|260559681|ref|ZP_05831861.1| ribonuclease HIII [Enterococcus faecium C68]
 gi|293560083|ref|ZP_06676587.1| ribonuclease hiii [Enterococcus faecium E1162]
 gi|294614400|ref|ZP_06694316.1| ribonuclease hiii [Enterococcus faecium E1636]
 gi|294617524|ref|ZP_06697154.1| ribonuclease hiii [Enterococcus faecium E1679]
 gi|68195972|gb|EAN10405.1| Ribonuclease HIII [Enterococcus faecium DO]
 gi|257813885|gb|EEV42643.1| ribonuclease HIII [Enterococcus faecium 1,230,933]
 gi|257826683|gb|EEV53309.1| ribonuclease HIII [Enterococcus faecium 1,231,410]
 gi|260074349|gb|EEW62671.1| ribonuclease HIII [Enterococcus faecium C68]
 gi|291592708|gb|EFF24301.1| ribonuclease hiii [Enterococcus faecium E1636]
 gi|291596130|gb|EFF27393.1| ribonuclease hiii [Enterococcus faecium E1679]
 gi|291605950|gb|EFF35380.1| ribonuclease hiii [Enterococcus faecium E1162]
          Length = 305

 Score = 74.7 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 27/181 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           V G DEVG G+  GP+ V A  +  + +      G+ DSK++   +  +L + +  +   
Sbjct: 91  VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKKTIPY 150

Query: 82  SISSASHQYID----KHNIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPED---- 128
            +   S +  +    K+N  +  +     A+  L        P + LID  +   +    
Sbjct: 151 KLLVLSPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIEPEKPEAILIDQFTPEANFKKY 210

Query: 129 -------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                  L  + + V KG+   L++AAASII   +R   +   HK   + G     G  T
Sbjct: 211 ARLEKNQLQEKLYFVTKGEQYHLAVAAASII---SRASFLEELHKASAEAGITLPSGAGT 267

Query: 182 A 182
            
Sbjct: 268 K 268


>gi|313609179|gb|EFR84856.1| ribonuclease hiii [Listeria monocytogenes FSL F2-208]
          Length = 293

 Score = 74.7 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 30/189 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EKI      
Sbjct: 78  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137

Query: 79  AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123
           +++   +  +  + K  +++  + A     A+EN+      V P + LID          
Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 197

Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
                P  +    F   K + + LS+AAASIIA   R + ++   +   + G     G  
Sbjct: 198 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDEMSKEVGIPLPKGAG 254

Query: 181 TAKHQQVIK 189
              H   + 
Sbjct: 255 --PHVDAVA 261


>gi|297208222|ref|ZP_06924652.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300912299|ref|ZP_07129742.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TCH70]
 gi|296886961|gb|EFH25864.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300886545|gb|EFK81747.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TCH70]
          Length = 318

 Score = 74.7 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 31/208 (14%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69
           LE  +       + G DE G G   GP+ V A  +   ++P     G++DSKK++  K  
Sbjct: 92  LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150

Query: 70  ELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSAL 119
           EL E++ +    +++++ +  +         +  + A+ H  A++N+            +
Sbjct: 151 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIV 210

Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
           ID  +  E           LP +     KG+S SL+IA ASII++      M    K   
Sbjct: 211 IDQFAKREVYNHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK--- 267

Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPS 194
           +       G            IK+ G S
Sbjct: 268 NINMTIPKGAGAKVDVIAAKIIKKYGLS 295


>gi|21282752|ref|NP_645840.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MW2]
 gi|73917853|sp|Q8NX59|RNH3_STAAW RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|21204190|dbj|BAB94888.1| MW1023 [Staphylococcus aureus subsp. aureus MW2]
          Length = 312

 Score = 74.7 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 31/208 (14%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69
           LE  +       + G DE G G   GP+ V A  +   ++P     G++DSKK++  K  
Sbjct: 86  LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 144

Query: 70  ELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSAL 119
           EL E++ +    +++++ +  +         +  + A+ H  A++N+            +
Sbjct: 145 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIV 204

Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
           ID  +  E           LP +     KG+S SL+IA ASII++      M    K   
Sbjct: 205 IDQFAKREVYNHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK--- 261

Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPS 194
           +       G            IK+ G S
Sbjct: 262 NINMTIPKGAGAKVDVIAAKIIKKYGLS 289


>gi|257882653|ref|ZP_05662306.1| ribonuclease HIII [Enterococcus faecium 1,231,502]
 gi|257883962|ref|ZP_05663615.1| ribonuclease HIII [Enterococcus faecium 1,231,501]
 gi|293568791|ref|ZP_06680105.1| ribonuclease hiii [Enterococcus faecium E1071]
 gi|294622759|ref|ZP_06701714.1| ribonuclease hiii [Enterococcus faecium U0317]
 gi|257818311|gb|EEV45639.1| ribonuclease HIII [Enterococcus faecium 1,231,502]
 gi|257819800|gb|EEV46948.1| ribonuclease HIII [Enterococcus faecium 1,231,501]
 gi|291588508|gb|EFF20342.1| ribonuclease hiii [Enterococcus faecium E1071]
 gi|291597810|gb|EFF28947.1| ribonuclease hiii [Enterococcus faecium U0317]
          Length = 305

 Score = 74.7 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 27/181 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           V G DEVG G+  GP+ V A  +  + +      G+ DSK++   +  +L + +  +   
Sbjct: 91  VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKKTIPY 150

Query: 82  SISSASHQYID----KHNIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPED---- 128
            +   S +  +    K+N  +  +     A+  L        P + LID  +   +    
Sbjct: 151 KLLVLSPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIEPEKPEAILIDQFTPEANFKKY 210

Query: 129 -------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                  L  + + V KG+   L++AAASII   +R   +    K   + G     G  T
Sbjct: 211 ARLEKNQLQEKLYFVTKGEQYHLAVAAASII---SRASFLEELDKASAEAGITLPSGAGT 267

Query: 182 A 182
            
Sbjct: 268 K 268


>gi|73917846|sp|Q720K1|RNH3_LISMF RecName: Full=Ribonuclease HIII; Short=RNase HIII
          Length = 308

 Score = 74.7 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 30/189 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EKI      
Sbjct: 93  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 152

Query: 79  AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123
           +++   +  +  + K  +++  + A     A+EN+      V P + LID          
Sbjct: 153 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 212

Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
                P  +    F   K + + LS+AAASIIA   R + ++       + G     G  
Sbjct: 213 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDAMSKEVGIPLPKGAG 269

Query: 181 TAKHQQVIK 189
              H   + 
Sbjct: 270 --PHVDAVA 276


>gi|294501477|ref|YP_003565177.1| ribonuclease HIII [Bacillus megaterium QM B1551]
 gi|294351414|gb|ADE71743.1| ribonuclease HIII [Bacillus megaterium QM B1551]
          Length = 304

 Score = 74.7 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 31/199 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81
           V G DEVG G   GP+ V A  +    +P     G+ DSK+++  K  E+ +++ S    
Sbjct: 89  VIGSDEVGTGDYFGPMTVVAAYVQKEQLPLLKELGVRDSKELTDAKIIEIAKQLVSFIPY 148

Query: 82  SISSASHQYID---KHNIHKATLDAIYH--AVENL-----QVIPRSALID---------- 121
           S+    ++  +   +  + +  + A+ H  A+ N+        P + LID          
Sbjct: 149 SLLVLHNEKYNAFQEKGMSQGKMKALLHNKALSNVLKKLDPEKPDAILIDQFVEKNTYYK 208

Query: 122 -GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
                 E +    F   KG+S+ LS+AAASIIA+    + M +  +K    G     G  
Sbjct: 209 HVVKEKEIIKENVFFSTKGESVHLSVAAASIIARYAFLKQMDLLTEK---TGMVIPRGAG 265

Query: 181 TAKHQQV---IKEKGPSCI 196
                     IK+ G + +
Sbjct: 266 AQVDIAAAKIIKKHGVNAL 284


>gi|226223828|ref|YP_002757935.1| ribonuclease HIII [Listeria monocytogenes Clip81459]
 gi|259494076|sp|C1L2D3|RNH3_LISMC RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|225876290|emb|CAS04999.1| Putative ribonuclease HIII [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
          Length = 308

 Score = 74.3 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 30/189 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EKI      
Sbjct: 93  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 152

Query: 79  AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123
           +++   +  +  + K  +++  + A     A+EN+      V P + LID          
Sbjct: 153 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 212

Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
                P  +    F   K + + LS+AAASIIA   R + ++       + G     G  
Sbjct: 213 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDAMSKEVGIPLPKGAG 269

Query: 181 TAKHQQVIK 189
              H   + 
Sbjct: 270 --PHVDAVA 276


>gi|261208746|ref|ZP_05923183.1| ribonuclease HIII [Enterococcus faecium TC 6]
 gi|289565570|ref|ZP_06446017.1| ribonuclease HIII [Enterococcus faecium D344SRF]
 gi|260077248|gb|EEW64968.1| ribonuclease HIII [Enterococcus faecium TC 6]
 gi|289162652|gb|EFD10505.1| ribonuclease HIII [Enterococcus faecium D344SRF]
          Length = 305

 Score = 74.3 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 27/181 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           V G DEVG G+  GP+ V A  +  + +      G+ DSK++   +  +L + +  +   
Sbjct: 91  VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKKTIPY 150

Query: 82  SISSASHQYID----KHNIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPED---- 128
            +   S +  +    K+N  +  +     A+  L        P + LID  +   +    
Sbjct: 151 KLLVLSPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPEKPEAILIDQFTPEANFKKY 210

Query: 129 -------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                  L  + + V KG+   L++AAASII   +R   +    K   + G     G  T
Sbjct: 211 ARLEKNQLQEKLYFVTKGEQYHLAVAAASII---SRASFLEELDKASAESGITLPSGAGT 267

Query: 182 A 182
            
Sbjct: 268 K 268


>gi|46907447|ref|YP_013836.1| ribonuclease HIII [Listeria monocytogenes serotype 4b str. F2365]
 gi|46880715|gb|AAT04013.1| putative ribonuclease HIII [Listeria monocytogenes serotype 4b str.
           F2365]
          Length = 293

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 30/189 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EKI      
Sbjct: 78  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137

Query: 79  AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123
           +++   +  +  + K  +++  + A     A+EN+      V P + LID          
Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 197

Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
                P  +    F   K + + LS+AAASIIA   R + ++       + G     G  
Sbjct: 198 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDAMSKEVGIPLPKGAG 254

Query: 181 TAKHQQVIK 189
              H   + 
Sbjct: 255 --PHVDAVA 261


>gi|258423817|ref|ZP_05686703.1| ribonuclease HIII [Staphylococcus aureus A9635]
 gi|257846049|gb|EEV70077.1| ribonuclease HIII [Staphylococcus aureus A9635]
          Length = 318

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 84/210 (40%), Gaps = 31/210 (14%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69
           LE  +       + G DE G G   GP+ V A  +   ++P     G++DSKK++  K  
Sbjct: 92  LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150

Query: 70  ELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSAL 119
           +L E++ +    +++++ +  +         +  + A+ H  A++N+            +
Sbjct: 151 DLAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIV 210

Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
           ID  +  E           LP +     KG+S SL+IA ASII++      M    K   
Sbjct: 211 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK--- 267

Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPSCI 196
           +       G            IK+ G S +
Sbjct: 268 NINMTIPKGAGAKVDVIAAKIIKKYGISRL 297


>gi|296331590|ref|ZP_06874059.1| ribonuclease HIII [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305675451|ref|YP_003867123.1| ribonuclease HIII [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151185|gb|EFG92065.1| ribonuclease HIII [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413695|gb|ADM38814.1| ribonuclease HIII [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 313

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/210 (25%), Positives = 87/210 (41%), Gaps = 34/210 (16%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
             V G DEVG G   GP+ V    +D   +P     G+ DSK +   +  E+   +  + 
Sbjct: 94  MSVIGSDEVGTGDYFGPMTVVCAYVDKTMLPLMKELGVKDSKDLKDPQIIEIARNLIKTI 153

Query: 80  IISISSASHQYID---KHNIHKATLDA--IYHAVENL-----QVIPRSALIDGRSIP--- 126
             S+    ++  +   +  + +  + A     A+ +L        P + LID  + P   
Sbjct: 154 PYSLLVLKNEKYNSMQEKGMSQGKMKALLHNQAITHLLRKMDGAKPEAILIDQFAEPGVY 213

Query: 127 -------EDLPCQAFAVIKGDSISLSIAAASIIAKVTR----DRLMRIAHKKYPDYGFDS 175
                  + +  + +   K + I LS+AAASIIA+ +     D+L R A    P  G   
Sbjct: 214 FNHLKGRDIVRERTYFSTKAEGIHLSVAAASIIARYSFLMEMDKLSREAGMTLPK-GAGP 272

Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           HV    AK   +I +KG S +   TF  L 
Sbjct: 273 HVDEAAAK---LILKKGASAL--RTFTKLH 297


>gi|255521227|ref|ZP_05388464.1| ribonuclease HIII [Listeria monocytogenes FSL J1-175]
          Length = 260

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 25/154 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EKI      
Sbjct: 78  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137

Query: 79  AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123
           +++   +  +  + K  +++  + A     A+EN+      V P + LID          
Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 197

Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                P  +    F   K + + LS+AAASIIA+
Sbjct: 198 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIAR 231


>gi|254823518|ref|ZP_05228519.1| ribonuclease HIII [Listeria monocytogenes FSL J1-194]
 gi|254852903|ref|ZP_05242251.1| ribonuclease HIII [Listeria monocytogenes FSL R2-503]
 gi|254932894|ref|ZP_05266253.1| ribonuclease HIII [Listeria monocytogenes HPB2262]
 gi|254992865|ref|ZP_05275055.1| ribonuclease HIII [Listeria monocytogenes FSL J2-064]
 gi|300764377|ref|ZP_07074371.1| ribonuclease HIII [Listeria monocytogenes FSL N1-017]
 gi|258606238|gb|EEW18846.1| ribonuclease HIII [Listeria monocytogenes FSL R2-503]
 gi|293584448|gb|EFF96480.1| ribonuclease HIII [Listeria monocytogenes HPB2262]
 gi|293592738|gb|EFG00499.1| ribonuclease HIII [Listeria monocytogenes FSL J1-194]
 gi|300515029|gb|EFK42082.1| ribonuclease HIII [Listeria monocytogenes FSL N1-017]
 gi|328466622|gb|EGF37757.1| ribonuclease HIII [Listeria monocytogenes 1816]
 gi|332311613|gb|EGJ24708.1| Ribonuclease HIII [Listeria monocytogenes str. Scott A]
          Length = 293

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 30/189 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EKI      
Sbjct: 78  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137

Query: 79  AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123
           +++   +  +  + K  +++  + A     A+EN+      V P + LID          
Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 197

Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
                P  +    F   K + + LS+AAASIIA   R + ++       + G     G  
Sbjct: 198 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDAMSKEVGIPLPKGAG 254

Query: 181 TAKHQQVIK 189
              H   + 
Sbjct: 255 --PHVDAVA 261


>gi|49485978|ref|YP_043199.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MSSA476]
 gi|73917852|sp|Q6GA74|RNH3_STAAS RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|49244421|emb|CAG42849.1| putative ribonuclease [Staphylococcus aureus subsp. aureus MSSA476]
          Length = 312

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 83/208 (39%), Gaps = 31/208 (14%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69
           LE  +       + G DE G G   GP+ V A  +   ++P     G++DSKK++  K  
Sbjct: 86  LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 144

Query: 70  ELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSAL 119
           EL +++ +    +++++ +  +         +  + A+ H  A++N+            +
Sbjct: 145 ELADQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIV 204

Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
           ID  +  E           LP +     KG+S SL+IA ASII++      M    K   
Sbjct: 205 IDQFAKREVYNHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK--- 261

Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPS 194
           +       G            IK+ G S
Sbjct: 262 NINMTIPKGAGAKVDVIAAKIIKKYGLS 289


>gi|321312395|ref|YP_004204682.1| ribonuclease HIII [Bacillus subtilis BSn5]
 gi|320018669|gb|ADV93655.1| ribonuclease HIII [Bacillus subtilis BSn5]
          Length = 312

 Score = 73.9 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/210 (25%), Positives = 88/210 (41%), Gaps = 34/210 (16%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
             V G DEVG G   GP+ V    +D   +P     G+ DSK +   +  E+   +  + 
Sbjct: 93  MSVIGSDEVGTGDYFGPMTVVCAYVDKTMLPLMKELGVKDSKDLKDPQIIEIARNLIKTI 152

Query: 80  IISISSASHQYID---KHNIHKATLDA--IYHAVENL-----QVIPRSALIDGRSIP--- 126
             S+    ++  +   +  + +  + A     A+ +L      + P + LID  + P   
Sbjct: 153 PYSLLVLKNEKYNSMQEKGMSQGKMKALLHNQAITHLLRKMDGIKPEAILIDQFAEPGVY 212

Query: 127 -------EDLPCQAFAVIKGDSISLSIAAASIIAKVTR----DRLMRIAHKKYPDYGFDS 175
                  + +  + +   K + I L++AAASIIA+ +     D+L R A    P  G   
Sbjct: 213 FNHLKGRDIVKERTYFSTKAEGIHLAVAAASIIARYSFLMEMDKLSREAGMTLPK-GAGP 271

Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           HV    AK   +I +KG S +   TF  L 
Sbjct: 272 HVDEAAAK---LILKKGASAL--RTFTKLH 296


>gi|291485294|dbj|BAI86369.1| ribonuclease HIII [Bacillus subtilis subsp. natto BEST195]
          Length = 312

 Score = 73.9 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 34/210 (16%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
             V G DEVG G   GP+ V    +D   +P     G+ DSK +   +  E+   +  + 
Sbjct: 93  MSVIGSDEVGTGDYFGPMTVVCAYVDKTMLPLMKELGVKDSKDLKDPQIIEIARNLIKTI 152

Query: 80  IISISSASHQYID---KHNIHKATLDA--IYHAVENL-----QVIPRSALIDGRSIP--- 126
             S+    ++  +   +  + +  + A     A+ +L      V P + LID  + P   
Sbjct: 153 PYSLLVLKNEKYNSMQEKGMSQGKMKALLHNQAITHLLRKLDGVKPEAILIDQFAEPGVY 212

Query: 127 -------EDLPCQAFAVIKGDSISLSIAAASIIAKVTR----DRLMRIAHKKYPDYGFDS 175
                  + +  + +   K + I L++AAASIIA+ +     D+L R A    P  G   
Sbjct: 213 FNHLKGRDIVKERTYFSTKAEGIHLAVAAASIIARYSFLMEMDKLSREAGMTLPK-GAGP 271

Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           HV    AK   +I +KG S +   TF  L 
Sbjct: 272 HVDEAAAK---LILKKGASAL--RTFTKLH 296


>gi|293366878|ref|ZP_06613554.1| ribonuclease HIII [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291319179|gb|EFE59549.1| ribonuclease HIII [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329729960|gb|EGG66351.1| ribonuclease HIII [Staphylococcus epidermidis VCU144]
 gi|329734428|gb|EGG70741.1| ribonuclease HIII [Staphylococcus epidermidis VCU045]
 gi|329736208|gb|EGG72480.1| ribonuclease HIII [Staphylococcus epidermidis VCU028]
          Length = 308

 Score = 73.9 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 28/171 (16%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS---SA 79
            G DE G G   GP+ V A  +  ++I      G++DSKK++  K  +L E++ +    +
Sbjct: 91  IGSDEAGSGDYFGPLTVCAAYVSQSHIKILKELGVDDSKKLNDTKIVDLAEQLITFIPHS 150

Query: 80  IISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSIPE----- 127
           ++++ +  +         +  + A+ H  A++N+     Q      +ID  +  E     
Sbjct: 151 LLTLDNVKYNERQSIGWSQVKMKAVLHNEAIKNVLQKIEQDQLDYIVIDQFAKREVYQHY 210

Query: 128 -----DLPCQAFAVIKGDSISLSIAAASIIAKVTR----DRLMRIAHKKYP 169
                  P +     KG+S SL+IAAASII++       D + +  H + P
Sbjct: 211 ALSALPFPDKTKFETKGESKSLAIAAASIISRYAFVKHMDHISKKLHMEIP 261


>gi|149037819|gb|EDL92179.1| ribonuclease H2, large subunit, isoform CRA_c [Rattus norvegicus]
 gi|149037822|gb|EDL92182.1| ribonuclease H2, large subunit, isoform CRA_c [Rattus norvegicus]
          Length = 158

 Score = 73.9 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 7/108 (6%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80
            V G+DE GRG + GP+V A          +     + DSK ++  +RE L+ K+     
Sbjct: 29  CVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGD 88

Query: 81  ---ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
               ++   S   I    + +   +    + +    + + A+     +
Sbjct: 89  FVGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKV 136


>gi|227552104|ref|ZP_03982153.1| ribonuclease H [Enterococcus faecium TX1330]
 gi|227178770|gb|EEI59742.1| ribonuclease H [Enterococcus faecium TX1330]
          Length = 313

 Score = 73.9 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 70/181 (38%), Gaps = 27/181 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           V G DEVG G+  GP+ V A  +  + +      G+ DSK++   +  +L + +  +   
Sbjct: 99  VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKETIPY 158

Query: 82  SISSASHQYID----KHNIHKATLDAIYHAVENL-----QVIPRSALIDGRSI------- 125
            +     +  +    K+N  +  +     A+  L        P + LID  +        
Sbjct: 159 KLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPEKPEAILIDQFTPEANFKKY 218

Query: 126 ----PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                  L  + + V KG+   L++AAASII   +R   +    K   + G     G  T
Sbjct: 219 ARLEKNHLQEKLYFVTKGEQYHLAVAAASII---SRASFLEELDKASAEAGITLPSGAGT 275

Query: 182 A 182
            
Sbjct: 276 K 276


>gi|16803268|ref|NP_464753.1| ribonuclease HIII [Listeria monocytogenes EGD-e]
 gi|20978687|sp|Q8Y7P5|RNH3_LISMO RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|16410644|emb|CAC99306.1| rnhC [Listeria monocytogenes EGD-e]
          Length = 308

 Score = 73.9 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 25/154 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EKI      
Sbjct: 93  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 152

Query: 79  AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123
           +++   +  +  + K  +++  + A     A+EN+      + P + LID          
Sbjct: 153 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTYYR 212

Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                P  +    F   K + + LS+AAASIIA+
Sbjct: 213 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIAR 246


>gi|257886734|ref|ZP_05666387.1| ribonuclease HIII [Enterococcus faecium 1,141,733]
 gi|257895300|ref|ZP_05674953.1| ribonuclease HIII [Enterococcus faecium Com12]
 gi|293378171|ref|ZP_06624340.1| ribonuclease HIII [Enterococcus faecium PC4.1]
 gi|257822788|gb|EEV49720.1| ribonuclease HIII [Enterococcus faecium 1,141,733]
 gi|257831865|gb|EEV58286.1| ribonuclease HIII [Enterococcus faecium Com12]
 gi|292643035|gb|EFF61176.1| ribonuclease HIII [Enterococcus faecium PC4.1]
          Length = 305

 Score = 73.9 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 70/181 (38%), Gaps = 27/181 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           V G DEVG G+  GP+ V A  +  + +      G+ DSK++   +  +L + +  +   
Sbjct: 91  VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKETIPY 150

Query: 82  SISSASHQYID----KHNIHKATLDAIYHAVENL-----QVIPRSALIDGRSI------- 125
            +     +  +    K+N  +  +     A+  L        P + LID  +        
Sbjct: 151 KLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPEKPEAILIDQFTPEANFKKY 210

Query: 126 ----PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                  L  + + V KG+   L++AAASII   +R   +    K   + G     G  T
Sbjct: 211 ARLEKNHLQEKLYFVTKGEQYHLAVAAASII---SRASFLEELDKASAEAGITLPSGAGT 267

Query: 182 A 182
            
Sbjct: 268 K 268


>gi|254828588|ref|ZP_05233275.1| rnhC [Listeria monocytogenes FSL N3-165]
 gi|258600986|gb|EEW14311.1| rnhC [Listeria monocytogenes FSL N3-165]
          Length = 293

 Score = 73.6 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 33/196 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EKI      
Sbjct: 78  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137

Query: 79  AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123
           +++   +  +  + K  +++  + A     A+EN+      + P + LID          
Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTYYR 197

Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAKV----TRDRLMRIAHKKYPDYGFDSH 176
                P  +    F   K + + LS+AAASIIA+       D + +      P  G   H
Sbjct: 198 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIARYKFVQAFDAMSKEVGISLPK-GAGPH 256

Query: 177 VGYPTAKHQQVIKEKG 192
           V    A   ++I+  G
Sbjct: 257 VD---AVAAEIIERFG 269


>gi|47095070|ref|ZP_00232683.1| ribonuclease HIII, putative [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254830018|ref|ZP_05234673.1| ribonuclease HIII [Listeria monocytogenes 10403S]
 gi|254898611|ref|ZP_05258535.1| ribonuclease HIII [Listeria monocytogenes J0161]
 gi|254911900|ref|ZP_05261912.1| ribonuclease HIII [Listeria monocytogenes J2818]
 gi|254936225|ref|ZP_05267922.1| rnhC [Listeria monocytogenes F6900]
 gi|284801548|ref|YP_003413413.1| ribonuclease HIII [Listeria monocytogenes 08-5578]
 gi|284994690|ref|YP_003416458.1| ribonuclease HIII [Listeria monocytogenes 08-5923]
 gi|47016688|gb|EAL07608.1| ribonuclease HIII, putative [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258608815|gb|EEW21423.1| rnhC [Listeria monocytogenes F6900]
 gi|284057110|gb|ADB68051.1| ribonuclease HIII [Listeria monocytogenes 08-5578]
 gi|284060157|gb|ADB71096.1| ribonuclease HIII [Listeria monocytogenes 08-5923]
 gi|293589858|gb|EFF98192.1| ribonuclease HIII [Listeria monocytogenes J2818]
          Length = 293

 Score = 73.6 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 33/196 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EKI      
Sbjct: 78  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137

Query: 79  AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123
           +++   +  +  + K  +++  + A     A+EN+      + P + LID          
Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTYYR 197

Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAKV----TRDRLMRIAHKKYPDYGFDSH 176
                P  +    F   K + + LS+AAASIIA+       D + +      P  G   H
Sbjct: 198 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIARYKFVQAFDAMSKEVGISLPK-GAGPH 256

Query: 177 VGYPTAKHQQVIKEKG 192
           V    A   ++I+  G
Sbjct: 257 VD---AVAAEIIERFG 269


>gi|330719016|ref|ZP_08313616.1| ribonuclease HIII [Leuconostoc fallax KCTC 3537]
          Length = 214

 Score = 73.6 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 70/166 (42%), Gaps = 26/166 (15%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G DEVG GA  GP+  AA+ +  +N+      G+ DSK ++     ++  KI +     +
Sbjct: 3   GSDEVGAGAYFGPLTTAAVYISQDNLDWVRQLGVADSKTLTDHDMIKMAPKIIAHLPHHV 62

Query: 84  SSASHQYID--KHNIHKATLDAIYHAVENLQV-------IPRSALIDGRSIPEDL----- 129
            +   +  +  +   +   + AI H     +V        P++ LID  ++P+       
Sbjct: 63  VNLLPEKYNAIQPQNNVNQMKAISHNFALHKVLEKIAPQKPQAILIDQFALPQTYYKHLT 122

Query: 130 PCQAFAVI--------KGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                 ++        K +   LS+AAASI+A+    + M+    +
Sbjct: 123 NANQQPIVRENVYFTTKAEQYHLSVAAASILARYVELQTMKKLSAE 168


>gi|290893289|ref|ZP_06556275.1| rnhC protein [Listeria monocytogenes FSL J2-071]
 gi|290557097|gb|EFD90625.1| rnhC protein [Listeria monocytogenes FSL J2-071]
          Length = 293

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 25/154 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EKI      
Sbjct: 78  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137

Query: 79  AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123
           +++   +  +  + K  +++  + A     A+EN+      V P + LID          
Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 197

Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                P  +    F   K + + LS+AAASIIA+
Sbjct: 198 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIAR 231


>gi|257892930|ref|ZP_05672583.1| ribonuclease HIII [Enterococcus faecium 1,231,408]
 gi|257829309|gb|EEV55916.1| ribonuclease HIII [Enterococcus faecium 1,231,408]
          Length = 305

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 70/181 (38%), Gaps = 27/181 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           V G DEVG G+  GP+ V A  +  + +      G+ DSK++   +  +L + +  +   
Sbjct: 91  VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKETIPY 150

Query: 82  SISSASHQYID----KHNIHKATLDAIYHAVENL-----QVIPRSALIDGRSI------- 125
            +     +  +    K+N  +  +     A+  L        P + LID  +        
Sbjct: 151 KLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPEKPEAILIDQFTPEANFKKY 210

Query: 126 ----PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                  L  + + V KG+   L++AAASII   +R   +    K   + G     G  T
Sbjct: 211 ARLEKNHLQEKLYFVTKGEQYHLAVAAASII---SRASFLEELDKASAEAGITLPSGAGT 267

Query: 182 A 182
            
Sbjct: 268 K 268


>gi|317129873|ref|YP_004096155.1| ribonuclease HIII [Bacillus cellulosilyticus DSM 2522]
 gi|315474821|gb|ADU31424.1| ribonuclease HIII [Bacillus cellulosilyticus DSM 2522]
          Length = 340

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 73/205 (35%), Gaps = 35/205 (17%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G DE G G   GP+ V    L    +     +G+ DSK I+     E+  ++      S+
Sbjct: 127 GSDETGTGDYFGPMTVVCAHLSKEQMKAIESWGVRDSKMINDTTIREIAPRLVKQCTYSL 186

Query: 84  SSASHQ---YIDKHNIHKATLDAIYH--AVENLQVIPRS-------ALIDGRSIPEDL-- 129
               ++    + +  +++  + A+ H  A+ N+               ID    P+    
Sbjct: 187 LVLKNEKYNELQERGMNQGQMKAMLHHQAIVNVMKKCDDESFTYDGVFIDQFVQPDRYFE 246

Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
                          +   K ++I  S+AAASI+A+ +    M    +   D G     G
Sbjct: 247 YLKVKGKSWTSKKPLYFATKAENIHPSVAAASILARYSFLNEMEKLER---DIGLPLPKG 303

Query: 179 YPTAKHQQV---IKEKGPSCIHRLT 200
                 +     +  KG   ++R T
Sbjct: 304 AGPKVDEAARNILHLKGKETLYRCT 328


>gi|294056228|ref|YP_003549886.1| ribonuclease HIII [Coraliomargarita akajimensis DSM 45221]
 gi|293615561|gb|ADE55716.1| ribonuclease HIII [Coraliomargarita akajimensis DSM 45221]
          Length = 329

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 25/164 (15%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITSSAIIS 82
           AG+DE G+G L GP+V A ++ D +     +  G+ DSKK++     +L ++I  +  + 
Sbjct: 111 AGMDESGKGDLFGPLVTACVVADGDMVRQWLELGVADSKKLTDNSILKLEKEIRKTKGVV 170

Query: 83  ISSASHQY------IDKHNIHKATLDAIYHA---VENLQVIP----------RSALIDGR 123
           I +A  +         K + +   L A YH+   +  L   P          +  L+D  
Sbjct: 171 IKTAFARMPKYNDLYHKFDRNLNKLLAWYHSKSLIGALDERPAPWGLLDQFTKEKLVDAY 230

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
            + +    +  +  K +S    +AAASI+A+    R M+   ++
Sbjct: 231 -VKDRKDFKLVSRTKAES-DPVVAAASIVARAVYVREMKRLSEE 272


>gi|257897916|ref|ZP_05677569.1| ribonuclease HIII [Enterococcus faecium Com15]
 gi|257835828|gb|EEV60902.1| ribonuclease HIII [Enterococcus faecium Com15]
          Length = 305

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 70/181 (38%), Gaps = 27/181 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           V G DEVG G+  GP+ V A  +  + +      G+ DSK++   +  +L + +  +   
Sbjct: 91  VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKETIPY 150

Query: 82  SISSASHQYID----KHNIHKATLDAIYHAVENL-----QVIPRSALIDGRSI------- 125
            +     +  +    K+N  +  +     A+  L        P + LID  +        
Sbjct: 151 KLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPEKPEAILIDQFTPEANFKKY 210

Query: 126 ----PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                  L  + + V KG+   L++AAASII   +R   +    K   + G     G  T
Sbjct: 211 ARLEKNHLQEKLYFVTKGEQYHLAVAAASII---SRASFLEELDKASAEAGITLPSGAGT 267

Query: 182 A 182
            
Sbjct: 268 K 268


>gi|224499100|ref|ZP_03667449.1| ribonuclease HIII [Listeria monocytogenes Finland 1988]
          Length = 293

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 25/154 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EKI      
Sbjct: 78  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137

Query: 79  AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123
           +++   +  +  + K  +++  + A     A+EN+      + P + LID          
Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTYYR 197

Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                P  +    F   K + + LS+AAASIIA+
Sbjct: 198 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIAR 231


>gi|16079914|ref|NP_390740.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310803|ref|ZP_03592650.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315128|ref|ZP_03596933.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221320046|ref|ZP_03601340.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221324328|ref|ZP_03605622.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. SMY]
 gi|7227926|sp|P94541|RNH3_BACSU RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|1770032|emb|CAA99565.1| hypothetical protein [Bacillus subtilis]
 gi|2635327|emb|CAB14822.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. 168]
          Length = 313

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 34/210 (16%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
             V G DEVG G   GP+ V    +D   +P     G+ DSK +   +  E+   +  + 
Sbjct: 94  MSVIGSDEVGTGDYFGPMTVVCAYVDKTMLPLMKELGVKDSKDLKDPQIIEIARNLIKTI 153

Query: 80  IISISSASHQYID---KHNIHKATLDA--IYHAVENL-----QVIPRSALIDGRSIP--- 126
             S+    ++  +   +  + +  + A     A+ +L      V P + LID  + P   
Sbjct: 154 PYSLLVLKNEKYNSMQEKGMSQGKMKALLHNQAITHLLRKLDGVKPEAILIDQFAEPGVY 213

Query: 127 -------EDLPCQAFAVIKGDSISLSIAAASIIAKVTR----DRLMRIAHKKYPDYGFDS 175
                  + +  + +   K + I L++AAASIIA+ +     D+L R A    P  G   
Sbjct: 214 FNHLKGRDIVKERTYFSTKAEGIHLAVAAASIIARYSFLMEMDKLSRAAGMTLPK-GAGP 272

Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205
           HV    AK   +I +KG S +   TF  L 
Sbjct: 273 HVDEAAAK---LILKKGASAL--RTFTKLH 297


>gi|16800260|ref|NP_470528.1| ribonuclease HIII [Listeria innocua Clip11262]
 gi|20978705|sp|Q92CI0|RNH3_LISIN RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|16413650|emb|CAC96422.1| rnhC [Listeria innocua Clip11262]
          Length = 308

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 25/154 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EKI      
Sbjct: 93  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPIVPH 152

Query: 79  AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123
           +++   +  +  + K  +++  + A     A+EN+      + P + LID          
Sbjct: 153 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTYYR 212

Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                P  +    F   K + + LS+AAASIIA+
Sbjct: 213 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIAR 246


>gi|148673842|gb|EDL05789.1| mCG129830, isoform CRA_b [Mus musculus]
          Length = 142

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 7/78 (8%)

Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI- 80
          V G+DE GRG + GP+V A          +     + DSK ++  +RE L+ K+      
Sbjct: 1  VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDF 60

Query: 81 --ISISSASHQYIDKHNI 96
             ++   S   I    +
Sbjct: 61 VGWALDVLSPNLISTSML 78


>gi|290968977|ref|ZP_06560512.1| ribonuclease HII [Megasphaera genomosp. type_1 str. 28L]
 gi|290780933|gb|EFD93526.1| ribonuclease HII [Megasphaera genomosp. type_1 str. 28L]
          Length = 306

 Score = 73.2 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 27/170 (15%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS--SAI 80
            G DE G+G + GP+VVAA IL   +       G+ DSK +   + + L E I +     
Sbjct: 97  MGCDESGKGDVFGPLVVAACILTEEDAAQLRALGVRDSKMVRSTQIKRLAETIKTRLQDR 156

Query: 81  ISISSASHQYIDKH---------NIHKATLDAIYHAVENL--QVIPRSALIDGRSIPEDL 129
            S+     Q  ++          N++          +  L  +      ++D       +
Sbjct: 157 YSVQVVMPQEYNRRYVCLAENGKNLNDLLGQLHARNIRRLLSKHKCPCIIVDKFGSERYV 216

Query: 130 PCQAFAVIK---------GDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170
             +   + K         G++   ++AAASI+A+      M    + Y  
Sbjct: 217 LQELGTLAKTHTVIQIPHGEA-DTAVAAASILAREAFVAAMEELRRLYGM 265


>gi|297583682|ref|YP_003699462.1| ribonuclease HIII [Bacillus selenitireducens MLS10]
 gi|297142139|gb|ADH98896.1| ribonuclease HIII [Bacillus selenitireducens MLS10]
          Length = 311

 Score = 73.2 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 63/171 (36%), Gaps = 29/171 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81
           + G DE G G   GP+ V A  L    +     +GI DSK I+ K    L  ++  +   
Sbjct: 96  LIGSDETGTGDFFGPMTVVACHLTKEQLKTVESWGIRDSKTITDKLIRTLAPRLLDTCTY 155

Query: 82  SISSASHQYIDKH---NIHKATLDAIYH--AVENL-------QVIPRSALIDGRSIPEDL 129
           S+ +  +   +      +++  + A+ H  A+ N+              LID    P   
Sbjct: 156 SLMTLHNNKYNALQQDGMNQGQMKAMLHHQAISNVIAKLNEEGTEADGVLIDQFCPPGTY 215

Query: 130 P-------------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                            +   K + +  ++AAASI+A+      M    +K
Sbjct: 216 FRYLKQGKLRWSEETPLYFATKAEQLHPAVAAASILARYAFIEEMDRIEEK 266


>gi|15618976|ref|NP_225262.1| ribonuclease HIII [Chlamydophila pneumoniae CWL029]
 gi|15836599|ref|NP_301123.1| ribonuclease HIII [Chlamydophila pneumoniae J138]
 gi|33242442|ref|NP_877383.1| ribonuclease HIII [Chlamydophila pneumoniae TW-183]
 gi|161353772|ref|NP_445321.2| ribonuclease HIII [Chlamydophila pneumoniae AR39]
 gi|7227929|sp|Q9Z6J1|RNH3_CHLPN RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|4377404|gb|AAD19205.1| Ribonuclease HII [Chlamydophila pneumoniae CWL029]
 gi|8979441|dbj|BAA99275.1| rbonuclease HII [Chlamydophila pneumoniae J138]
 gi|33236953|gb|AAP99040.1| ribonuclease HII [Chlamydophila pneumoniae TW-183]
          Length = 298

 Score = 73.2 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 69/187 (36%), Gaps = 33/187 (17%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAI------ILDPNNIPFGINDSKKISHKKREELYE 73
           E+++ P  G+DE G+G   GP+ +AA+      IL        + DSK +   K   L  
Sbjct: 82  EQDLRPRLGVDESGKGDFFGPLCIAAVYASNAEILKKLYEN-KVQDSKNLKDTKIASLAR 140

Query: 74  KITSSAIISISSASHQYIDKH---NIHKATLDAIYHA--VENLQVIPRSALIDGRSIPED 128
            I S  +  +     +  ++      +  TL A  HA  + NL   P     D  +I + 
Sbjct: 141 IIRSLCVCDVIILYPEKYNELYGKFQNLNTLLAWAHATVINNLAPKPA---GDVFAISDQ 197

Query: 129 LPCQAFAVIKG---------------DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173
                + ++K                    + +AAASI+A   RD  ++   K    Y  
Sbjct: 198 FAASEYTLLKALQKKETDITLIQKPRAEQDVVVAAASILA---RDAFVQSIQKLEEQYQV 254

Query: 174 DSHVGYP 180
               G  
Sbjct: 255 QLPKGAG 261


>gi|7189697|gb|AAF38581.1| ribonuclease HII [Chlamydophila pneumoniae AR39]
          Length = 301

 Score = 73.2 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 69/187 (36%), Gaps = 33/187 (17%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAI------ILDPNNIPFGINDSKKISHKKREELYE 73
           E+++ P  G+DE G+G   GP+ +AA+      IL        + DSK +   K   L  
Sbjct: 85  EQDLRPRLGVDESGKGDFFGPLCIAAVYASNAEILKKLYEN-KVQDSKNLKDTKIASLAR 143

Query: 74  KITSSAIISISSASHQYIDKH---NIHKATLDAIYHA--VENLQVIPRSALIDGRSIPED 128
            I S  +  +     +  ++      +  TL A  HA  + NL   P     D  +I + 
Sbjct: 144 IIRSLCVCDVIILYPEKYNELYGKFQNLNTLLAWAHATVINNLAPKPA---GDVFAISDQ 200

Query: 129 LPCQAFAVIKG---------------DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173
                + ++K                    + +AAASI+A   RD  ++   K    Y  
Sbjct: 201 FAASEYTLLKALQKKETDITLIQKPRAEQDVVVAAASILA---RDAFVQSIQKLEEQYQV 257

Query: 174 DSHVGYP 180
               G  
Sbjct: 258 QLPKGAG 264


>gi|293570968|ref|ZP_06682012.1| ribonuclease hiii [Enterococcus faecium E980]
 gi|291608952|gb|EFF38230.1| ribonuclease hiii [Enterococcus faecium E980]
          Length = 305

 Score = 73.2 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 76/197 (38%), Gaps = 29/197 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81
           V G DEVG G+  GP+ V A  +  + +      G+ DSK++   +  +L + +  +   
Sbjct: 91  VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADVLKETIPY 150

Query: 82  SISSASHQYID----KHNIHKATLDAIYHAVENL-----QVIPRSALIDGRSI------- 125
            +     +  +    K+N  +  +     A+  L        P + LID  +        
Sbjct: 151 KLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPEKPEAILIDQFTPEANFKKY 210

Query: 126 ----PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                  L  + + V KG+   L++AAASII   +R   +    K   + G     G  T
Sbjct: 211 ARLEKNHLQEKLYFVTKGEQYHLAVAAASII---SRASFLEELDKASAEAGITLPSGAGT 267

Query: 182 AKHQQV--IKEKGPSCI 196
              Q    + EKG   I
Sbjct: 268 KSDQIAAKLLEKGGMPI 284


>gi|169829510|ref|YP_001699668.1| ribonuclease HIII [Lysinibacillus sphaericus C3-41]
 gi|238688201|sp|B1HW99|RNH3_LYSSC RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|168993998|gb|ACA41538.1| Ribonuclease HIII [Lysinibacillus sphaericus C3-41]
          Length = 308

 Score = 73.2 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 60/170 (35%), Gaps = 25/170 (14%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS 78
           +  V G DE G G   GP+ VAA+ +  + I      G+ DSK +S     ++   + ++
Sbjct: 92  LMSVLGSDETGTGDYFGPMTVAAVYVPSSKIELINELGVKDSKMLSDDYMRKIAPDLRAA 151

Query: 79  AIISISSASHQYID----------KHNIHKATLDAIYHAVENLQVIPRSALID------- 121
            + S+    ++  +          K               +     P   LID       
Sbjct: 152 CVHSVLILRNEKYNSLQAKGYSQGKMKAMMHNKALHNTLAKMAPETPEYILIDQFAERGV 211

Query: 122 -GRSIPEDLPCQAFAV---IKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
               +  +      +V    K + + +++A ASI+A+    + M      
Sbjct: 212 YYNYLKNEREIVQESVYFSTKAEQLHVAVATASILARAAFLKEMDRLSDI 261


>gi|84489361|ref|YP_447593.1| putative ribonuclease HIII [Methanosphaera stadtmanae DSM 3091]
 gi|84372680|gb|ABC56950.1| putative ribonuclease HIII [Methanosphaera stadtmanae DSM 3091]
          Length = 309

 Score = 72.8 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 66/173 (38%), Gaps = 26/173 (15%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT 76
           K    + G DE G+G   GP+VV A+    ++I      G+ DSKK+S K+   LYEKI 
Sbjct: 107 KKYQYIIGSDETGKGEWYGPLVVCAVCTSNDDILKLKSIGVKDSKKLSTKEIFSLYEKIE 166

Query: 77  S-SAIISISSASHQYIDKH---------NIHKATLDAIYHAVENL----QVIPRSALIDG 122
             +    +        +K          N++       Y  +  L           +ID 
Sbjct: 167 KLNITYEVIVLKPFSYNKLYTKFTNENKNLNHLLAHLHYKVINQLLTKINTTDVLVIIDK 226

Query: 123 RSIPE-------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
               +       +          G+   + +A +SIIAK   ++ ++   ++Y
Sbjct: 227 FDYKKMNQYLDINPKIDVIQETNGE-KYIPVATSSIIAKYYYEKTLKEIEERY 278


>gi|169335211|ref|ZP_02862404.1| hypothetical protein ANASTE_01619 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257949|gb|EDS71915.1| hypothetical protein ANASTE_01619 [Anaerofustis stercorihominis DSM
           17244]
          Length = 304

 Score = 72.8 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 94/212 (44%), Gaps = 37/212 (17%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS--- 77
           P+ G DEVG+G    P++V ++ L+ N        G+ DSK +S  +  +L  +I     
Sbjct: 99  PLLGSDEVGKGDFYAPIIVGSVYLEKNEYDILKTLGVRDSKDLSDDRIIKLASEIKKVTN 158

Query: 78  -SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP-----RSALIDGRSIPE---- 127
             +I+ I  + +  + K   +   + A  H V N++ +      + AL+D     E    
Sbjct: 159 NYSILRIGQSKYNELYKKIGNINAILAWAH-VTNIKNVYKKQHFKKALVDKFGREEQIRN 217

Query: 128 ---DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA-- 182
              +L  +     K +  ++++AAASI+A   RD L+         Y FD  +G  +   
Sbjct: 218 GLKELNLEMIFKPKAEQ-NIAVAAASILA---RDALLTTIKNMNKHYDFDFPLGANSIVI 273

Query: 183 -KHQQVIKEKG------PSCIHRLTFRPLRNL 207
            K ++ +K+ G         +H   F+ ++N+
Sbjct: 274 TKGKEFVKKFGEEELNNVCKMH---FKTVQNI 302


>gi|224502477|ref|ZP_03670784.1| ribonuclease HIII [Listeria monocytogenes FSL R2-561]
          Length = 281

 Score = 72.8 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 25/154 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EKI      
Sbjct: 66  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 125

Query: 79  AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123
           +++   +  +  + K  +++  + A     A+EN+      + P + LID          
Sbjct: 126 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTYYR 185

Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                P  +    F   K + + LS+AAASIIA+
Sbjct: 186 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIAR 219


>gi|167043102|gb|ABZ07812.1| putative uncharacterized protein family UPF0102 [uncultured marine
           microorganism HF4000_ANIW141I9]
          Length = 172

 Score = 72.8 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 26/46 (56%)

Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           M      +P+YGF  H GY T+ H + + +   S IHR +F+P++ 
Sbjct: 1   MEQYDVIFPEYGFAKHKGYGTSFHMEQLNKNKASLIHRKSFKPVKK 46


>gi|313624050|gb|EFR94134.1| ribonuclease hiii [Listeria innocua FSL J1-023]
          Length = 293

 Score = 72.8 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 25/154 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EKI      
Sbjct: 78  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPIVPH 137

Query: 79  AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123
           +++   +  +  + +  +++  + A     A+EN+      V P + LID          
Sbjct: 138 SVLLCPNPKYNELQQRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 197

Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                P  +    F   K + + LS+AAASIIA+
Sbjct: 198 YLAKEPSIIRDDVFFATKAEGLHLSVAAASIIAR 231


>gi|253731751|ref|ZP_04865916.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724509|gb|EES93238.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 315

 Score = 72.8 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 31/208 (14%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69
           LE  +       + G DE G G   GP+ V A  +   ++P     G++DSKK++  K  
Sbjct: 92  LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150

Query: 70  ELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSAL 119
           EL E++ +    +++++ +  +         +  + A+ H  A++N+            +
Sbjct: 151 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIV 210

Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
           ID  +  E           LP +     KG+S SL+IA ASII++      M    K   
Sbjct: 211 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTNMDQISK--- 267

Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPS 194
           +       G            IK+ G S
Sbjct: 268 NINMTIPKGAGAKVDVIAAKIIKKYGLS 295


>gi|323342859|ref|ZP_08083091.1| ribonuclease HIII [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463971|gb|EFY09165.1| ribonuclease HIII [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 295

 Score = 72.4 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 73/196 (37%), Gaps = 39/196 (19%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS 82
           AG DEVG G   GP+ V A I++ ++        I DSK+++  K  ++   +      S
Sbjct: 87  AGSDEVGTGDYFGPITVCACIVNESDLQRIPVAEIVDSKQMTDDKIRKIAPILKQELQYS 146

Query: 83  ISSASHQYI----DKHNIHKATLDAIYHAVENLQVI---PRSALIDGRSIPEDL------ 129
           +    ++      D  N++         A  NL+     P  A+ID     +        
Sbjct: 147 LLILDNKKYNRVHDTMNMNVIKAKLHNQAFLNLKKRYEMPPYAIIDQFMAEKPYYNALKG 206

Query: 130 -PCQAFAVI---KGDSISLSIAAASIIAKV----TRDRLMRIAHKKYPDYGFDSHVGYPT 181
            P     +I   K ++  +++A  +IIA+       D+L       +P        G   
Sbjct: 207 EPEIFRGLIFETKAENKFIAVACGAIIARFGFLDYLDKLSTKYDCVFP-------KGAG- 258

Query: 182 AKH-----QQVIKEKG 192
             H     ++ ++  G
Sbjct: 259 -AHVDTFGKEFVRRYG 273


>gi|71408510|ref|XP_806655.1| ribonuclease H [Trypanosoma cruzi strain CL Brener]
 gi|70870462|gb|EAN84804.1| ribonuclease H, putative [Trypanosoma cruzi]
          Length = 324

 Score = 72.4 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 87/223 (39%), Gaps = 51/223 (22%)

Query: 26  VAGIDEVGRGALAGPVVV--AAIILDPNNIPF---GINDSKKISHKKREELYEKITS--- 77
           V GIDE GRG + GP+V   A I L  ++      G+NDSK +   +R+++  K+     
Sbjct: 41  VLGIDEAGRGPVIGPMVYTGAMIALHEHDRLLEYCGVNDSKLLGENQRKDVLCKLQELKT 100

Query: 78  ----SAIISISSASHQY--IDKHNIHKATLDAIYHAVENLQVIP----RSALIDGRSIPE 127
               + +++ +  +     I   N++  + D     +    +        A ID    PE
Sbjct: 101 FSTFTVVVTPAEIAAAMTGIHGKNLNTLSHDTAIAIISKATLEATGMLCGAYIDTVGPPE 160

Query: 128 DLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
               +              K ++    +AAAS++AKV RDR +          G D   G
Sbjct: 161 SYQQRLSGRFPHLRITVAKKAETKFPIVAAASVVAKVERDRHIERL-------GIDVGSG 213

Query: 179 YPT-AKHQQVIKEKGPSCIHRL------------TFRPLRNLS 208
           YP+  K    ++      +HR             ++ P+  L+
Sbjct: 214 YPSDPKVMTWVRSH----VHRFFVLPREFDFVRLSWGPVVELA 252


>gi|319401546|gb|EFV89756.1| ribonuclease HIII [Staphylococcus epidermidis FRI909]
          Length = 308

 Score = 72.4 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 28/178 (15%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKI 75
           + N +   G DE G G   GP+ V A  +  ++I      G++DSKK++  K  +L E++
Sbjct: 84  QYNHFHCIGSDEAGSGDYFGPLTVCAAYVSQSHIKILKELGVDDSKKLNDTKIVDLAEQL 143

Query: 76  TS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSI 125
            +    +++++ +  +         +  + A+ H  A++N+     Q      +ID  + 
Sbjct: 144 ITFIPHSLLTLDNVKYNERQSLGWSQVKMKAVLHNEAIKNVIQKIEQDQLDYIVIDQFAK 203

Query: 126 PE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTR----DRLMRIAHKKYP 169
            E            P +     KG+S SL+IA ASII++       D + +  H + P
Sbjct: 204 REVYQHYALSALPFPDKTKFETKGESKSLAIATASIISRYAFVKHMDHISKKLHMEIP 261


>gi|161579047|ref|NP_296655.2| ribonuclease HIII [Chlamydia muridarum Nigg]
 gi|270285065|ref|ZP_06194459.1| ribonuclease HIII [Chlamydia muridarum Nigg]
 gi|270289090|ref|ZP_06195392.1| ribonuclease HIII [Chlamydia muridarum Weiss]
 gi|301336461|ref|ZP_07224663.1| ribonuclease HIII [Chlamydia muridarum MopnTet14]
          Length = 299

 Score = 72.4 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 77/213 (36%), Gaps = 34/213 (15%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKKREELYEK 74
           ++++ P  G+DE G+G   GP+  A +         +     I DSK IS  K   L   
Sbjct: 82  QQDLRPRIGVDESGKGDFFGPLCTAGVYAPSIKSIESLYEITICDSKLISDAKIPSLARS 141

Query: 75  ITSSAIISISSASHQYIDKHNIHKATLD---AIYHA--VENLQVIPR---SALIDGRSIP 126
           I S     + +   +  +    +   L+   A  HA  +++L   P     A+ D  +  
Sbjct: 142 IRSLCTCKVITLFPEKYNALYANFQNLNALLAWTHATIIDDLAPKPTGDVFAISDQFASS 201

Query: 127 EDLPCQAFAVIKGD---------SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
           E +  QA    + D            + +AAASI+A   RD  +         Y      
Sbjct: 202 ERVLLQAVRKKRADIELIQRHRAEQDVVVAAASILA---RDAFLSSMQTLESQYQVRLLK 258

Query: 178 GYPTAKHQQV---IKEKG------PSCIHRLTF 201
           G      QQ    +++KG          H  TF
Sbjct: 259 GASGKVKQQAKEILRDKGQPVLEKVCKTHFKTF 291


>gi|57866643|ref|YP_188306.1| ribonuclease HIII [Staphylococcus epidermidis RP62A]
 gi|242242439|ref|ZP_04796884.1| ribonuclease HIII [Staphylococcus epidermidis W23144]
 gi|73917855|sp|Q5HQ34|RNH3_STAEQ RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|57637301|gb|AAW54089.1| ribonuclease HIII [Staphylococcus epidermidis RP62A]
 gi|242234146|gb|EES36458.1| ribonuclease HIII [Staphylococcus epidermidis W23144]
          Length = 308

 Score = 72.4 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 28/178 (15%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKI 75
           + N +   G DE G G   GP+ V A  +  ++I      G++DSKK++  K  +L E++
Sbjct: 84  QYNHFHCIGSDEAGSGDYFGPLTVCAAYVSQSHIKILKELGVDDSKKLNDTKIVDLAEQL 143

Query: 76  TS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSI 125
            +    +++++ +  +         +  + A+ H  A++N+     Q      +ID  + 
Sbjct: 144 ITFIPHSLLTLDNVKYNERQSLGWSQVKMKAVLHNEAIKNVIQKIEQDQLDYIVIDQFAK 203

Query: 126 PE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTR----DRLMRIAHKKYP 169
            E            P +     KG+S SL+IA ASII++       D + +  H + P
Sbjct: 204 REVYQHYALSALPFPDKTKFETKGESKSLAIATASIISRYAFVKHMDHISKKLHMEIP 261


>gi|14195187|sp|Q9PL32|RNH3_CHLMU RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|7190317|gb|AAF39144.1| ribonuclease HII [Chlamydia muridarum Nigg]
          Length = 301

 Score = 72.4 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 77/213 (36%), Gaps = 34/213 (15%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKKREELYEK 74
           ++++ P  G+DE G+G   GP+  A +         +     I DSK IS  K   L   
Sbjct: 84  QQDLRPRIGVDESGKGDFFGPLCTAGVYAPSIKSIESLYEITICDSKLISDAKIPSLARS 143

Query: 75  ITSSAIISISSASHQYIDKHNIHKATLD---AIYHA--VENLQVIPR---SALIDGRSIP 126
           I S     + +   +  +    +   L+   A  HA  +++L   P     A+ D  +  
Sbjct: 144 IRSLCTCKVITLFPEKYNALYANFQNLNALLAWTHATIIDDLAPKPTGDVFAISDQFASS 203

Query: 127 EDLPCQAFAVIKGD---------SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
           E +  QA    + D            + +AAASI+A   RD  +         Y      
Sbjct: 204 ERVLLQAVRKKRADIELIQRHRAEQDVVVAAASILA---RDAFLSSMQTLESQYQVRLLK 260

Query: 178 GYPTAKHQQV---IKEKG------PSCIHRLTF 201
           G      QQ    +++KG          H  TF
Sbjct: 261 GASGKVKQQAKEILRDKGQPVLEKVCKTHFKTF 293


>gi|255513539|gb|EET89805.1| ribonuclease HII [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 212

 Score = 72.0 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 66/172 (38%), Gaps = 37/172 (21%)

Query: 52  NIPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDA-----IY 105
               G+ DSK +S K+RE L++ I S S  I++   +   I++   +K +L+        
Sbjct: 12  FAEIGVRDSKMLSRKRRELLFKSINSISDAIAVDKITPAEINQAMSNKISLNELEAIRFA 71

Query: 106 HAVENLQVIPRSALIDGRSIPEDLPC---------------------------QAFAVIK 138
              + L+    +  +D   + ++                              +  +  K
Sbjct: 72  KLFDQLKEDIGTVYLDSPDVIQEKFGIRFKMSSGKPLKVIGLKQKAQKGIKFTKVISEHK 131

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA-KHQQVIK 189
            DS    ++AASIIAKV RDR ++   K           GYP+  K    ++
Sbjct: 132 ADSKYPVVSAASIIAKVVRDREVKKIEKSL---RIRIGSGYPSDSKTIDAVR 180


>gi|116872599|ref|YP_849380.1| ribonuclease HIII [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116741477|emb|CAK20601.1| ribonuclease HIII [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 293

 Score = 72.0 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 25/154 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EKI      
Sbjct: 78  VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPIVPH 137

Query: 79  AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123
           +++   +  +  + K  +++  + A     A+EN+        P + LID          
Sbjct: 138 SVLLCPNPKYNELQKKGMNQGQMKALLHNRAIENVLKKLAPRKPEAILIDQFAEKNTYYR 197

Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                P  +    F   K + + LS+AAASIIA+
Sbjct: 198 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIAR 231


>gi|322827961|gb|EFZ31928.1| ribonuclease H, putative [Trypanosoma cruzi]
          Length = 324

 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 87/223 (39%), Gaps = 51/223 (22%)

Query: 26  VAGIDEVGRGALAGPVVV--AAIILDPNNIPF---GINDSKKISHKKREELYEKITS--- 77
           V GIDE GRG + GP+V   A I L  ++      G+NDSK +   +R+++  K+     
Sbjct: 41  VLGIDEAGRGPVIGPMVYTGAMIALHEHDRLLEYCGVNDSKLLGENQRKDVLCKLQKLKT 100

Query: 78  ----SAIISISSASHQY--IDKHNIHKATLDAIYHAVENLQVIP----RSALIDGRSIPE 127
               + +++ +  +     I   N++  + D     +    +        A ID    PE
Sbjct: 101 FSTFTVVVTPAEIAAAMTGIHGKNLNTLSHDTAIAIISKATLEATGMLCGAYIDTVGPPE 160

Query: 128 DLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
               +              K ++    +AAAS++AKV RDR +          G D   G
Sbjct: 161 SYQQRLSGRFPHLRITVAKKAETKFPIVAAASVVAKVERDRHIERL-------GIDVGSG 213

Query: 179 YPT-AKHQQVIKEKGPSCIHRL------------TFRPLRNLS 208
           YP+  K    ++      +HR             ++ P+  L+
Sbjct: 214 YPSDPKVMTWVRSH----VHRFFVLPREFDFVRLSWGPVVELA 252


>gi|71894629|ref|YP_278737.1| ribonuclease HII [Mycoplasma synoviae 53]
          Length = 237

 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 76/187 (40%), Gaps = 34/187 (18%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI 80
            V GIDEVG G    P++  A+ +  + +      G+ DSK +S +K ++++  I S   
Sbjct: 17  FVFGIDEVGVGEFFTPLIATAVYVPKDKLEILKNLGVKDSKLLSDEKIKKVFNDIKSHIQ 76

Query: 81  ISISSASHQYID----KHNIHKATLDAIYHAVENLQVIP---RSALIDG--------RSI 125
            + +  S +  +    K N ++    A   A+ NL+         +ID            
Sbjct: 77  YASALISQKSYNILFTKFNANEIKFLAHAEAINNLRKKVKKSELLIIDAYVNSDPSFNKY 136

Query: 126 PEDL-----------PCQAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP--D 170
            E +           P +    I  K +S  + +AAASI+A+      M+   +++P   
Sbjct: 137 YEKIIVSYKDLYGFSPWKEKIAILKKAESHYIEVAAASIVARYELLLQMQKMQEEFPKAK 196

Query: 171 YGFDSHV 177
           +   S+ 
Sbjct: 197 FNLASNK 203


>gi|50310553|ref|XP_455296.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644432|emb|CAG98004.1| KLLA0F04774p [Kluyveromyces lactis]
          Length = 304

 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 89/235 (37%), Gaps = 41/235 (17%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-----PFGINDSKKISH 65
           H E+   + E     + G+DE GRG + GP+V                 +G +DSKK++ 
Sbjct: 33  HSEVPKSILESTDEIILGVDEAGRGPVMGPMVYGISYCTRQYEKDVICKYGFDDSKKLTD 92

Query: 66  KKREELYEKITSSAIISISSASHQY--------------IDKHNIHKATLDAIYHAVENL 111
             R++L+  I    I  +  A+                    +N+++   D     ++++
Sbjct: 93  PVRQKLFAMIYGGEIDGVGYATTSITACDISSGMFRFPPEKNYNLNEQAHDVTIALIDDV 152

Query: 112 ---QVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDR 159
               V      +D    P     +  ++          K DSI   ++ AS++AKVTRD 
Sbjct: 153 LKSGVKVGHVYVDTVGPPISYQKKLESIFPQCKFTVAKKADSIYPIVSVASVVAKVTRDI 212

Query: 160 LMRIAHKKYPDYGFDSHVGYPTA-KHQQVIKEK-----GPSCI-HRLTFRPLRNL 207
           ++    K   +       GYP   K  Q ++ +     G S    R +++    +
Sbjct: 213 ILSQCKKTEDEI---LGSGYPGDSKTVQWLRNEMKPLMGWSPYMVRFSWQTCATM 264


>gi|144575201|gb|AAZ44026.2| ribonuclease HII [Mycoplasma synoviae 53]
          Length = 242

 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 76/187 (40%), Gaps = 34/187 (18%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI 80
            V GIDEVG G    P++  A+ +  + +      G+ DSK +S +K ++++  I S   
Sbjct: 22  FVFGIDEVGVGEFFTPLIATAVYVPKDKLEILKNLGVKDSKLLSDEKIKKVFNDIKSHIQ 81

Query: 81  ISISSASHQYID----KHNIHKATLDAIYHAVENLQVIP---RSALIDG--------RSI 125
            + +  S +  +    K N ++    A   A+ NL+         +ID            
Sbjct: 82  YASALISQKSYNILFTKFNANEIKFLAHAEAINNLRKKVKKSELLIIDAYVNSDPSFNKY 141

Query: 126 PEDL-----------PCQAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP--D 170
            E +           P +    I  K +S  + +AAASI+A+      M+   +++P   
Sbjct: 142 YEKIIVSYKDLYGFSPWKEKIAILKKAESHYIEVAAASIVARYELLLQMQKMQEEFPKAK 201

Query: 171 YGFDSHV 177
           +   S+ 
Sbjct: 202 FNLASNK 208


>gi|194017282|ref|ZP_03055894.1| ribonuclease hiii [Bacillus pumilus ATCC 7061]
 gi|194011150|gb|EDW20720.1| ribonuclease hiii [Bacillus pumilus ATCC 7061]
          Length = 307

 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 78/196 (39%), Gaps = 30/196 (15%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79
             V G DEVG G   GP+ V A  +D + +      G+ DSK +   +   + + +  + 
Sbjct: 93  MSVIGSDEVGTGDYFGPMTVCAAYVDASQLALMKELGVKDSKGLKDPQIINIAKDLIKTI 152

Query: 80  IISISSASHQYID---KHNIHKATLDAIYH------AVENL-QVIPRSALIDGRSIP--- 126
             S+    ++  +   +  + +  + A+ H       +E L    P + LID  + P   
Sbjct: 153 PFSLLVLRNEKYNAMQEKGMSQGKMKALLHNQVITSVLEKLDGKQPEAILIDQFAEPGIY 212

Query: 127 -------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
                  + +  + +   K + I LS+AAASIIA+      M    K     GFD   G 
Sbjct: 213 FKHLAGKKIIRERTYFSTKAEGIHLSVAAASIIARYAFLIEMDKLSK---AAGFDIPKGA 269

Query: 180 P---TAKHQQVIKEKG 192
                    ++IK  G
Sbjct: 270 GPHVDKAAAKLIKLHG 285


>gi|315151447|gb|EFT95463.1| ribonuclease HIII [Enterococcus faecalis TX0012]
          Length = 305

 Score = 71.6 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 76/197 (38%), Gaps = 29/197 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
             W V G DEVG G+  GPV V A  +D + I      G+ DSK+++  +  +L   I  
Sbjct: 89  GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148

Query: 78  SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128
                +     +  ++   +  T+         A+  L        P   LID  +   +
Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNTVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208

Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                         + F V KG+   +++AAASII++      +    K+  + GF    
Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 265

Query: 178 GYPTAKHQQV--IKEKG 192
           G  +   Q    I +KG
Sbjct: 266 GAGSKSDQVAARILKKG 282


>gi|284048370|ref|YP_003398709.1| ribonuclease HIII [Acidaminococcus fermentans DSM 20731]
 gi|283952591|gb|ADB47394.1| ribonuclease HIII [Acidaminococcus fermentans DSM 20731]
          Length = 317

 Score = 71.6 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 51/200 (25%), Positives = 85/200 (42%), Gaps = 35/200 (17%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS 77
            +W   G DE G+G   GP+ VAA+ LD         +GI DSK ++  K   L EKI  
Sbjct: 106 GLW--CGSDESGKGDYFGPLAVAAVCLDLAAARQYAAWGICDSKALTDGKIRLLAEKIRQ 163

Query: 78  SAIIS-ISSASHQYID---------KHNIHKATLDAIYHA---VENLQVIPRSALIDGR- 123
           +A    +     ++ +         K N++        HA   V       R AL+D   
Sbjct: 164 TARAHTVLVLKPRFYNQRYAQLKARKQNLNHLLASGHIHALGRVIQQVPECRFALVDQFT 223

Query: 124 -------SIPEDLPC-QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
                  ++    P  + +   KG++  +++AAASI+A   RD  + +  +     GF  
Sbjct: 224 RHNAIASTLETGFPGLKVYQQPKGEA-DMAVAAASILA---RDAFVEVMDQLSAQAGFPL 279

Query: 176 HVGYP---TAKHQQVIKEKG 192
             G     TA  +++++E+G
Sbjct: 280 PKGGGDQATAAARKLVREQG 299


>gi|156842375|ref|XP_001644555.1| hypothetical protein Kpol_1003p2 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115201|gb|EDO16697.1| hypothetical protein Kpol_1003p2 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 312

 Score = 71.6 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 78/230 (33%), Gaps = 50/230 (21%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKREELYEKITSS 78
            + G+DE GRG + GP+V                  +  +DSKK++   R  L+ K+   
Sbjct: 37  VILGVDEAGRGPVMGPMVYGISYCTKEYQDTVLIPKYAFDDSKKLTDNIRRNLFSKMYDQ 96

Query: 79  ----------------------AIISISSASHQYIDKHNIHKATLDAIYHAVENL---QV 113
                                   IS     +     +N+++   D   + ++ L    V
Sbjct: 97  NGDGTGEIEIDGVGYATTAITPVDISSGMLRYPPSQNYNLNEQAHDVTMNLIQGLVEKGV 156

Query: 114 IPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIA 164
                 +D    P     +              K DS+   ++ AS++AKVTRD ++   
Sbjct: 157 TIDHVYVDTVGPPVSYQKKLETRFPNIKFTVAKKADSLYCVVSVASVVAKVTRDIILEQM 216

Query: 165 HKKYPDYGFDSHVGYPT-AKHQQVIKEK------GPSCIHRLTFRPLRNL 207
                +       GYP+  K    + +        P  + R +++  + L
Sbjct: 217 KSNENEI---LGSGYPSDPKTTAWLAKNQKQLFAWPQSLVRFSWQTCQTL 263


>gi|256762264|ref|ZP_05502844.1| ribonuclease HIII [Enterococcus faecalis T3]
 gi|256683515|gb|EEU23210.1| ribonuclease HIII [Enterococcus faecalis T3]
          Length = 306

 Score = 71.6 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
             W V G DEVG G+  GPV V A  +D + I      G+ DSK+++  +  +L   I  
Sbjct: 90  GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLAHVIKE 149

Query: 78  SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128
                +     +  ++   +   +         A+  L        P   LID  +   +
Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209

Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                         + F V KG+   +++AAASII++      +    K+  + GF    
Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 266

Query: 178 GYPTAKHQQV--IKEKG 192
           G  +   Q    I +KG
Sbjct: 267 GAGSKSDQVAARILKKG 283


>gi|330444312|ref|YP_004377298.1| ribonuclease HIII [Chlamydophila pecorum E58]
 gi|328807422|gb|AEB41595.1| ribonuclease HIII [Chlamydophila pecorum E58]
          Length = 298

 Score = 71.6 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 24/172 (13%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN-----DSKKISHKKREELYEK 74
           E+N+ P  G+DE G+G   GP+ +A +      I   +      DSK +       L + 
Sbjct: 82  EQNLRPRIGVDESGKGDFFGPLCIAGVYAPDKRILQELYKTKIQDSKTLRDTTILSLAKT 141

Query: 75  ITSSAIISISSASHQYIDKH---NIHKATLDAIYHA--VENLQVIPR---SALIDGRSIP 126
           I S     + +   +  ++      +   L A  HA  ++NL   P     A+ D  +  
Sbjct: 142 IRSLCTYDVMTLYPEKYNELYGKFRNLNALLAWGHATVIDNLAPCPAQEVFAISDQFASS 201

Query: 127 EDLPCQAFA----------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
           E L  +A              K ++  + +AAASI+A+      M+     Y
Sbjct: 202 EQLLLEALKKKNSEILLIQKTKAEA-DIVVAAASILAREAFITSMKKLEALY 252


>gi|294780117|ref|ZP_06745490.1| ribonuclease HIII [Enterococcus faecalis PC1.1]
 gi|307268535|ref|ZP_07549908.1| ribonuclease HIII [Enterococcus faecalis TX4248]
 gi|294452792|gb|EFG21221.1| ribonuclease HIII [Enterococcus faecalis PC1.1]
 gi|306515131|gb|EFM83673.1| ribonuclease HIII [Enterococcus faecalis TX4248]
 gi|315034079|gb|EFT46011.1| ribonuclease HIII [Enterococcus faecalis TX0017]
 gi|315036747|gb|EFT48679.1| ribonuclease HIII [Enterococcus faecalis TX0027]
 gi|323480498|gb|ADX79937.1| ribonuclease HIII [Enterococcus faecalis 62]
          Length = 305

 Score = 71.6 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
             W V G DEVG G+  GPV V A  +D + I      G+ DSK+++  +  +L   I  
Sbjct: 89  GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148

Query: 78  SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128
                +     +  ++   +   +         A+  L        P   LID  +   +
Sbjct: 149 RIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208

Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                         + F V KG+   +++AAASII++      +    K+  + GF    
Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 265

Query: 178 GYPTAKHQQV--IKEKG 192
           G  +   Q    I +KG
Sbjct: 266 GAGSKSDQVAARILKKG 282


>gi|256958755|ref|ZP_05562926.1| ribonuclease HIII [Enterococcus faecalis DS5]
 gi|257078784|ref|ZP_05573145.1| ribonuclease HIII [Enterococcus faecalis JH1]
 gi|256949251|gb|EEU65883.1| ribonuclease HIII [Enterococcus faecalis DS5]
 gi|256986814|gb|EEU74116.1| ribonuclease HIII [Enterococcus faecalis JH1]
          Length = 306

 Score = 71.6 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
             W V G DEVG G+  GPV V A  +D + I      G+ DSK+++  +  +L   I  
Sbjct: 90  GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149

Query: 78  SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128
                +     +  ++   +   +         A+  L        P   LID  +   +
Sbjct: 150 RIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209

Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                         + F V KG+   +++AAASII++      +    K+  + GF    
Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 266

Query: 178 GYPTAKHQQV--IKEKG 192
           G  +   Q    I +KG
Sbjct: 267 GAGSKSDQVAARILKKG 283


>gi|27467751|ref|NP_764388.1| ribonuclease HIII [Staphylococcus epidermidis ATCC 12228]
 gi|73917854|sp|Q8CPL8|RNH3_STAES RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|27315295|gb|AAO04430.1|AE016746_220 putative ribonuclease HIII [Staphylococcus epidermidis ATCC 12228]
          Length = 308

 Score = 71.2 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 28/171 (16%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS---SA 79
            G DE G G   GP+ V A  +  ++I      G++DSKK++  K  +L E++ +    +
Sbjct: 91  IGSDEAGSGDYFGPLTVCAAYVSQSHIKILKELGVDDSKKLNDTKIVDLAEQLITFIPHS 150

Query: 80  IISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSIPE----- 127
           ++++ +  +         +  + A+ H  A++N+     Q      +ID  +  E     
Sbjct: 151 LLTLDNVKYNERQSIGWSQVKMKAVLHNEAIKNVLQKIEQDQLDYIVIDQFAKREVYQHY 210

Query: 128 -----DLPCQAFAVIKGDSISLSIAAASIIAKVTR----DRLMRIAHKKYP 169
                  P +     KG+S SL+IA ASII++       D + +  H + P
Sbjct: 211 ALSALPFPDKTKFETKGESKSLAIAVASIISRYAFVKHMDHISKKLHMEIP 261


>gi|329577099|gb|EGG58572.1| ribonuclease HIII [Enterococcus faecalis TX1467]
          Length = 289

 Score = 71.2 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
             W V G DEVG G+  GPV V A  +D + I      G+ DSK+++  +  +L   I  
Sbjct: 73  GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 132

Query: 78  SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128
                +     +  ++   +   +         A+  L        P   LID  +   +
Sbjct: 133 RIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 192

Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                         + F V KG+   +++AAASII++      +    K+  + GF    
Sbjct: 193 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 249

Query: 178 GYPTAKHQQV--IKEKG 192
           G  +   Q    I +KG
Sbjct: 250 GAGSKSDQVAARILKKG 266


>gi|149183057|ref|ZP_01861510.1| ribonuclease HIII [Bacillus sp. SG-1]
 gi|148849238|gb|EDL63435.1| ribonuclease HIII [Bacillus sp. SG-1]
          Length = 309

 Score = 71.2 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 71/182 (39%), Gaps = 28/182 (15%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
             + G DEVG G   GP+ V A  +    IP     G+ DSK ++ +K   + + + S  
Sbjct: 92  MSLIGSDEVGTGDFFGPITVVAAYVKKEQIPLLKELGVKDSKNLNDEKIIAIAKNLLSVI 151

Query: 80  IISISSASHQYID---KHNIHKATLDA--IYHAVENL-----QVIPRSALIDG----RSI 125
             S+    +   +   +  + +  + A     A+ NL        P + LID      + 
Sbjct: 152 PYSLLICHNDKYNALQEKGMSQGKIKALLHNRAILNLLQKIAPEKPEAVLIDQFAEENTY 211

Query: 126 PEDLPCQ-------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
            + L  Q            KG+SI LS+AAASI+A+    + M          GF    G
Sbjct: 212 YKYLAGQKEIHRENVLFSTKGESIHLSVAAASILARYAFVKEMDKLSALA---GFPIPKG 268

Query: 179 YP 180
             
Sbjct: 269 AG 270


>gi|170290760|ref|YP_001737576.1| ribonuclease HII/HIII [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174840|gb|ACB07893.1| ribonuclease HII/HIII [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 167

 Score = 71.2 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 18/146 (12%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAIIS 82
            G DE G+G   GP+VVAA+ LD     F    G+ +SK +  K+ EEL   I   +I S
Sbjct: 8   IGSDEAGKGEREGPIVVAAVALDGEGRKFLRARGLLESKSVPKKRIEELAGLIREVSISS 67

Query: 83  -ISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137
            +   S + +    ++ N++       +  V+ +     +  I   S       +AF+ I
Sbjct: 68  HVKRVSPEELRELWNRGNLNDLLSIWHFEVVKEVLKDTEACRIIVDSFDRRRLEEAFSQI 127

Query: 138 KG---------DSISLSIAAASIIAK 154
           KG         D    S+AAASI+AK
Sbjct: 128 KGIEVIIESGADLKYPSVAAASILAK 153


>gi|229546057|ref|ZP_04434782.1| ribonuclease HIII [Enterococcus faecalis TX1322]
 gi|256852909|ref|ZP_05558279.1| ribonuclease HIII [Enterococcus faecalis T8]
 gi|307291247|ref|ZP_07571131.1| ribonuclease HIII [Enterococcus faecalis TX0411]
 gi|229308830|gb|EEN74817.1| ribonuclease HIII [Enterococcus faecalis TX1322]
 gi|256711368|gb|EEU26406.1| ribonuclease HIII [Enterococcus faecalis T8]
 gi|306497478|gb|EFM67011.1| ribonuclease HIII [Enterococcus faecalis TX0411]
 gi|315030923|gb|EFT42855.1| ribonuclease HIII [Enterococcus faecalis TX4000]
          Length = 305

 Score = 71.2 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 75/197 (38%), Gaps = 29/197 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
             W V G DEVG G+  GPV V A  +D + I      G+ DSK+++  +  +L   I  
Sbjct: 89  GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148

Query: 78  SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128
                +     +  +K   +   +         A+  L        P   LID  +   +
Sbjct: 149 LIPYKLLIVEPKKYNKIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208

Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                         + F V KG+   +++AAASII++      +    K+  + GF    
Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 265

Query: 178 GYPTAKHQQV--IKEKG 192
           G  +   Q    I +KG
Sbjct: 266 GAGSKSDQVAARILKKG 282


>gi|315282003|ref|ZP_07870510.1| ribonuclease hiii [Listeria marthii FSL S4-120]
 gi|313614348|gb|EFR87985.1| ribonuclease hiii [Listeria marthii FSL S4-120]
          Length = 293

 Score = 70.9 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 25/154 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78
           V G DEVG G   GP+ V A  +D   +P     G+ DSK +   +   + EKI      
Sbjct: 78  VVGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPIVPH 137

Query: 79  AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123
           +++   +  +  + +  +++  + A     A+EN+      V P + LID          
Sbjct: 138 SVLLCPNPKYNELQQRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 197

Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                P  +    F   K + + LS+AAASIIA+
Sbjct: 198 YLAQEPSIVREDVFFATKAEGLHLSVAAASIIAR 231


>gi|319651783|ref|ZP_08005909.1| ribonuclease [Bacillus sp. 2_A_57_CT2]
 gi|317396602|gb|EFV77314.1| ribonuclease [Bacillus sp. 2_A_57_CT2]
          Length = 312

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 75/195 (38%), Gaps = 31/195 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81
           V G DEVG G   GP+ V A  +  + IP     G+ DSK +  +K  E+ ++I      
Sbjct: 94  VIGSDEVGTGDYFGPITVVAAYVKKDQIPLLKELGVKDSKNLGDEKIIEIAKQIKDIVPY 153

Query: 82  SISSASHQYIDKHNIH-----KATLDAIYHAVENL-----QVIPRSALIDGRSIPEDLPC 131
           S+ +  ++  +K         K        A+ ++        P + LID  +  E    
Sbjct: 154 SLLTLHNEKYNKLQQSGMSQGKIKALLHNQAIGHVLGKIAPEKPEAILIDQFAKEEVYFN 213

Query: 132 -----------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
                      + F   K + I L++AAASI+A+    R       K    GF    G  
Sbjct: 214 YLKNQQTIQRERVFFSTKAEGIHLAVAAASILARYAFVRHFENLSTKA---GFRLTKGAG 270

Query: 181 TAKHQQV---IKEKG 192
               +     I++KG
Sbjct: 271 PKVDEAAARLIRDKG 285


>gi|157693280|ref|YP_001487742.1| ribonuclease HIII [Bacillus pumilus SAFR-032]
 gi|166991072|sp|A8FG15|RNH3_BACP2 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|157682038|gb|ABV63182.1| ribonuclease H [Bacillus pumilus SAFR-032]
          Length = 307

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 30/196 (15%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79
             V G DEVG G   GP+ V A  +D +++      G+ DSK +   +   + + +  + 
Sbjct: 93  MSVIGSDEVGTGDYFGPITVCAAYVDASHLALMKELGVKDSKGLKDPQIINIAKDLIKTI 152

Query: 80  IISISSASHQYID---KHNIHKATLDAIYH------AVENL-QVIPRSALIDGRSIP--- 126
             S+    ++  +   +  + +  + A+ H      A+E L    P + LID  + P   
Sbjct: 153 PFSLLVLRNEKYNAMQEKGMSQGKMKALLHNQVITSALEKLDGKQPEAILIDQFAEPGIY 212

Query: 127 -------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
                  + +  + +   K + I LS+AAASIIA+      M    +     GF+   G 
Sbjct: 213 FKHLAGKKIIRERTYFSTKAEGIHLSVAAASIIARYAFLIEMDKLSE---AAGFEIPKGA 269

Query: 180 P---TAKHQQVIKEKG 192
                    ++IK  G
Sbjct: 270 GPHVDKAAAKLIKLHG 285


>gi|71409033|ref|XP_806884.1| ribonuclease H [Trypanosoma cruzi strain CL Brener]
 gi|70870756|gb|EAN85033.1| ribonuclease H, putative [Trypanosoma cruzi]
          Length = 324

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 86/223 (38%), Gaps = 51/223 (22%)

Query: 26  VAGIDEVGRGALAGPVVV--AAIILDPNNIPF---GINDSKKISHKKREELYEKITS--- 77
           V GIDE GRG + GP+V   A I L  ++      G+NDSK +   +R+++  K+     
Sbjct: 41  VLGIDEAGRGPVIGPMVYTGAMIALHEHDRLLEYCGVNDSKLLGENQRKDVLCKLQKLKT 100

Query: 78  ----SAIISISSASHQY--IDKHNIHKATLDAIYHAVENLQVIP----RSALIDGRSIPE 127
               +  ++ +  +     I   N++  + D     +    +        A ID    PE
Sbjct: 101 FSTFTVFVTPAEIAAAMTGIHGKNLNTLSHDTAIAIISKATLEATGMLCGAYIDTVGPPE 160

Query: 128 DLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
               +              K ++    +AAAS++AKV RDR +          G D   G
Sbjct: 161 SYQQRLSGRFPHLRITVAKKAETKFPIVAAASVVAKVERDRHIERL-------GIDVGSG 213

Query: 179 YPT-AKHQQVIKEKGPSCIHRL------------TFRPLRNLS 208
           YP+  K    ++      +HR             ++ P+  L+
Sbjct: 214 YPSDPKVMTWVRSH----VHRFFVLPREFDFVRLSWGPVVELA 252


>gi|89098885|ref|ZP_01171765.1| ribonuclease HIII [Bacillus sp. NRRL B-14911]
 gi|89086289|gb|EAR65410.1| ribonuclease HIII [Bacillus sp. NRRL B-14911]
          Length = 348

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 70/195 (35%), Gaps = 31/195 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81
           V G DEVG G   GP+ V A      ++P     G+ DSK +   +   + ++I      
Sbjct: 133 VIGSDEVGTGDYFGPITVVAAYAKKESLPLLKELGVKDSKHLKDDQIIRIAKEIKEVVPY 192

Query: 82  SISSASHQYIDKHNIH-----KATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL-- 129
           S+ +  +   ++         K        A+ N+        P + LID  +  +    
Sbjct: 193 SLLTLKNSKYNQLQQSGMSQGKIKALLHNQAIGNVLKKMAPEKPEAILIDQFAKEDVYYR 252

Query: 130 ---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
                        F   K + I LS+AAASI+A+    R      ++    GF    G  
Sbjct: 253 HLQGQSVIQRENVFFSTKAEGIHLSVAAASILARYAFLRYFDKLSEEA---GFTLPKGAG 309

Query: 181 TAKHQQV---IKEKG 192
               +     IK KG
Sbjct: 310 AQVDKAAARLIKAKG 324


>gi|269302868|gb|ACZ32968.1| ribonuclease HIII [Chlamydophila pneumoniae LPCoLN]
          Length = 298

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 68/187 (36%), Gaps = 33/187 (17%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAI------ILDPNNIPFGINDSKKISHKKREELYE 73
           E+++ P  G+DE G+G   GP+ +A +      IL        + DSK +   K   L  
Sbjct: 82  EQDLRPRLGVDESGKGDFFGPLCIAGVYASNAEILKKLYEN-KVQDSKNLKDTKIASLAR 140

Query: 74  KITSSAIISISSASHQYIDKH---NIHKATLDAIYHA--VENLQVIPRSALIDGRSIPED 128
            I S  +  +     +  ++      +  TL A  HA  + NL   P     D  +I + 
Sbjct: 141 IIRSLCVCDVIILYPEKYNELYGKFQNLNTLLAWAHATIINNLAPKPA---GDVFAISDQ 197

Query: 129 LPCQAFAVIKG---------------DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173
                + ++K                    + +AAASI+A   RD  ++   K    Y  
Sbjct: 198 FAASEYTLLKALQKKETDITLIQKPRAEQDVVVAAASILA---RDAFVQSIQKLEEQYQV 254

Query: 174 DSHVGYP 180
               G  
Sbjct: 255 QLPKGAG 261


>gi|229550247|ref|ZP_04438972.1| ribonuclease HIII [Enterococcus faecalis ATCC 29200]
 gi|300859668|ref|ZP_07105756.1| ribonuclease HIII [Enterococcus faecalis TUSoD Ef11]
 gi|307277609|ref|ZP_07558701.1| ribonuclease HIII [Enterococcus faecalis TX2134]
 gi|312952263|ref|ZP_07771138.1| ribonuclease HIII [Enterococcus faecalis TX0102]
 gi|229304685|gb|EEN70681.1| ribonuclease HIII [Enterococcus faecalis ATCC 29200]
 gi|300850486|gb|EFK78235.1| ribonuclease HIII [Enterococcus faecalis TUSoD Ef11]
 gi|306505874|gb|EFM75052.1| ribonuclease HIII [Enterococcus faecalis TX2134]
 gi|310629647|gb|EFQ12930.1| ribonuclease HIII [Enterococcus faecalis TX0102]
 gi|315153226|gb|EFT97242.1| ribonuclease HIII [Enterococcus faecalis TX0031]
 gi|315155995|gb|EFU00012.1| ribonuclease HIII [Enterococcus faecalis TX0043]
 gi|315157833|gb|EFU01850.1| ribonuclease HIII [Enterococcus faecalis TX0312]
 gi|315166764|gb|EFU10781.1| ribonuclease HIII [Enterococcus faecalis TX1341]
          Length = 305

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 76/197 (38%), Gaps = 29/197 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
             W V G DEVG G+  GPV V A  +D + I      G+ DSK+++  +  +L   I  
Sbjct: 89  GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148

Query: 78  SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128
                +     +  ++   +   +         A+  L        P   LID  +  ++
Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPEKN 208

Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                         + F V KG+   +++AAASII++      +    K+  + GF    
Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 265

Query: 178 GYPTAKHQQV--IKEKG 192
           G  +   Q    I +KG
Sbjct: 266 GAGSKSDQVAARILKKG 282


>gi|255973022|ref|ZP_05423608.1| ribonuclease HIII [Enterococcus faecalis T1]
 gi|257422845|ref|ZP_05599835.1| ribonuclease HIII [Enterococcus faecalis X98]
 gi|255964040|gb|EET96516.1| ribonuclease HIII [Enterococcus faecalis T1]
 gi|257164669|gb|EEU94629.1| ribonuclease HIII [Enterococcus faecalis X98]
          Length = 306

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 76/197 (38%), Gaps = 29/197 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
             W V G DEVG G+  GPV V A  +D + I      G+ DSK+++  +  +L   I  
Sbjct: 90  GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149

Query: 78  SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128
                +     +  ++   +   +         A+  L        P   LID  +  ++
Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPEKN 209

Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                         + F V KG+   +++AAASII++      +    K+  + GF    
Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 266

Query: 178 GYPTAKHQQV--IKEKG 192
           G  +   Q    I +KG
Sbjct: 267 GAGSKSDQVAARILKKG 283


>gi|227499052|ref|ZP_03929189.1| ribonuclease HIII [Acidaminococcus sp. D21]
 gi|226904501|gb|EEH90419.1| ribonuclease HIII [Acidaminococcus sp. D21]
          Length = 320

 Score = 70.5 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 89/211 (42%), Gaps = 36/211 (17%)

Query: 27  AGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI------T 76
           AG DE G+G   GP+ VAA+ILD       +  G+ DSK +S  K   L  ++      +
Sbjct: 114 AGSDESGKGDYLGPLCVAAVILDEIGAKKLLALGVRDSKTLSDAKIRRLAPQVYAIAKAS 173

Query: 77  SSAIISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPR--SALIDGRSIPEDLPCQA 133
           ++A +     + +Y    N++         A+   L+ +P    AL+D  +    +  + 
Sbjct: 174 AAAALMPQQYNEEYEKAQNLNPLLSTYHIGAIMTVLKKVPECHFALVDQFTRSPYIKNEL 233

Query: 134 FAVIKGDSIS--------LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185
              + G S+         +++AAASI+A+    + M    ++    GF+   G      +
Sbjct: 234 ERAVPGLSVYSHTKGEADMAVAAASILARSLFLKKMEELSQEA---GFELPFGGGAQATR 290

Query: 186 QV---IKEKG------PSCIHRLTFRPLRNL 207
                I+++G       + +H   F   +NL
Sbjct: 291 AAEKIIQQEGRERLGHYAKLH---FANTKNL 318


>gi|315169945|gb|EFU13962.1| ribonuclease HIII [Enterococcus faecalis TX1342]
          Length = 305

 Score = 70.5 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
             W V G DEVG G+  GPV V A  +D + I      G+ DSK+++  +  +L   I  
Sbjct: 89  GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148

Query: 78  SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128
                +     +  ++   +   +         A+  L        P   LID  +   +
Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTQPEGILIDQFTPENN 208

Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                         + F V KG+   +++AAASII++      +    K+  + GF    
Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 265

Query: 178 GYPTAKHQQV--IKEKG 192
           G  +   Q    I +KG
Sbjct: 266 GAGSKSDQVAARILKKG 282


>gi|227518526|ref|ZP_03948575.1| ribonuclease HIII [Enterococcus faecalis TX0104]
 gi|227074008|gb|EEI11971.1| ribonuclease HIII [Enterococcus faecalis TX0104]
          Length = 305

 Score = 70.5 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
             W V G DEVG G+  GPV V A  +D + I      G+ DSK+++  +  +L   I  
Sbjct: 89  GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148

Query: 78  SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128
                +     +  ++   +   +         A+  L        P   LID  +   +
Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208

Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                         + F V KG+   +++AAASII++      +    K+  + GF    
Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 265

Query: 178 GYPTAKHQQV--IKEKG 192
           G  +   Q    I +KG
Sbjct: 266 GAGSKSDQVAARILKKG 282


>gi|315027498|gb|EFT39430.1| ribonuclease HIII [Enterococcus faecalis TX2137]
          Length = 305

 Score = 70.5 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
             W V G DEVG G+  GPV V A  +D + I      G+ DSK+++  +  +L   I  
Sbjct: 89  GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148

Query: 78  SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128
                +     +  ++   +   +         A+  L        P   LID  +   +
Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208

Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                         + F V KG+   +++AAASII++      +    K+  + GF    
Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 265

Query: 178 GYPTAKHQQV--IKEKG 192
           G  +   Q    I +KG
Sbjct: 266 GAGSKSDQVAARILKKG 282


>gi|257086614|ref|ZP_05580975.1| ribonuclease HIII [Enterococcus faecalis D6]
 gi|256994644|gb|EEU81946.1| ribonuclease HIII [Enterococcus faecalis D6]
          Length = 306

 Score = 70.5 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
             W V G DEVG G+  GPV V A  +D + I      G+ DSK+++  +  +L   I  
Sbjct: 90  GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149

Query: 78  SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128
                +     +  ++   +   +         A+  L        P   LID  +   +
Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209

Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                         + F V KG+   +++AAASII++      +    K+  + GF    
Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 266

Query: 178 GYPTAKHQQV--IKEKG 192
           G  +   Q    I +KG
Sbjct: 267 GAGSKSDQVAARILKKG 283


>gi|307279081|ref|ZP_07560139.1| ribonuclease HIII [Enterococcus faecalis TX0860]
 gi|306504206|gb|EFM73418.1| ribonuclease HIII [Enterococcus faecalis TX0860]
          Length = 305

 Score = 70.5 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
             W V G DEVG G+  GPV V A  +D + I      G+ DSK+++  +  +L   I  
Sbjct: 89  GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148

Query: 78  SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128
                +     +  ++   +   +         A+  L        P   LID  +   +
Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKAALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208

Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                         + F V KG+   +++AAASII++      +    K+  + GF    
Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 265

Query: 178 GYPTAKHQQV--IKEKG 192
           G  +   Q    I +KG
Sbjct: 266 GAGSKSDQVAARILKKG 282


>gi|315174353|gb|EFU18370.1| ribonuclease HIII [Enterococcus faecalis TX1346]
          Length = 305

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
             W V G DEVG G+  GPV V A  +D + I      G+ DSK+++  +  +L   I  
Sbjct: 89  GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148

Query: 78  SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128
                +     +  ++   +   +         A+  L        P   LID  +   +
Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208

Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                         + F V KG+   +++AAASII++      +    K+  + GF    
Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 265

Query: 178 GYPTAKHQQV--IKEKG 192
           G  +   Q    I +KG
Sbjct: 266 GAGSKSDQVAARILKKG 282


>gi|257085473|ref|ZP_05579834.1| ribonuclease HIII [Enterococcus faecalis Fly1]
 gi|256993503|gb|EEU80805.1| ribonuclease HIII [Enterococcus faecalis Fly1]
          Length = 306

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
             W V G DEVG G+  GPV V A  +D + I      G+ DSK+++  +  +L   I  
Sbjct: 90  GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149

Query: 78  SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128
                +     +  ++   +   +         A+  L        P   LID  +   +
Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209

Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                         + F V KG+   +++AAASII++      +    K+  + GF    
Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 266

Query: 178 GYPTAKHQQV--IKEKG 192
           G  +   Q    I +KG
Sbjct: 267 GAGSKSDQVAARILKKG 283


>gi|255976061|ref|ZP_05426647.1| ribonuclease HIII [Enterococcus faecalis T2]
 gi|255968933|gb|EET99555.1| ribonuclease HIII [Enterococcus faecalis T2]
          Length = 306

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
             W V G DEVG G+  GPV V A  +D + I      G+ DSK+++  +  +L   I  
Sbjct: 90  GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149

Query: 78  SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128
                +     +  ++   +   +         A+  L        P   LID  +   +
Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKAALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209

Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                         + F V KG+   +++AAASII++      +    K+  + GF    
Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 266

Query: 178 GYPTAKHQQV--IKEKG 192
           G  +   Q    I +KG
Sbjct: 267 GAGSKSDQVAARILKKG 283


>gi|293383165|ref|ZP_06629082.1| ribonuclease HIII [Enterococcus faecalis R712]
 gi|293387681|ref|ZP_06632226.1| ribonuclease HIII [Enterococcus faecalis S613]
 gi|312899345|ref|ZP_07758678.1| ribonuclease HIII [Enterococcus faecalis TX0470]
 gi|312907246|ref|ZP_07766237.1| ribonuclease HIII [Enterococcus faecalis DAPTO 512]
 gi|312909864|ref|ZP_07768712.1| ribonuclease HIII [Enterococcus faecalis DAPTO 516]
 gi|291079504|gb|EFE16868.1| ribonuclease HIII [Enterococcus faecalis R712]
 gi|291082870|gb|EFE19833.1| ribonuclease HIII [Enterococcus faecalis S613]
 gi|310626274|gb|EFQ09557.1| ribonuclease HIII [Enterococcus faecalis DAPTO 512]
 gi|311289822|gb|EFQ68378.1| ribonuclease HIII [Enterococcus faecalis DAPTO 516]
 gi|311293496|gb|EFQ72052.1| ribonuclease HIII [Enterococcus faecalis TX0470]
 gi|327534888|gb|AEA93722.1| ribonuclease H [Enterococcus faecalis OG1RF]
          Length = 305

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
             W V G DEVG G+  GPV V A  +D + I      G+ DSK+++  +  +L   I  
Sbjct: 89  GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148

Query: 78  SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128
                +     +  ++   +   +         A+  L        P   LID  +   +
Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208

Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                         + F V KG+   +++AAASII++      +    K+  + GF    
Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 265

Query: 178 GYPTAKHQQV--IKEKG 192
           G  +   Q    I +KG
Sbjct: 266 GAGSKSDQVAARILKKG 282


>gi|256962140|ref|ZP_05566311.1| ribonuclease HIII [Enterococcus faecalis Merz96]
 gi|256952636|gb|EEU69268.1| ribonuclease HIII [Enterococcus faecalis Merz96]
          Length = 306

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
             W V G DEVG G+  GPV V A  +D + I      G+ DSK+++  +  +L   I  
Sbjct: 90  GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149

Query: 78  SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128
                +     +  ++   +   +         A+  L        P   LID  +   +
Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209

Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                         + F V KG+   +++AAASII++      +    K+  + GF    
Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 266

Query: 178 GYPTAKHQQV--IKEKG 192
           G  +   Q    I +KG
Sbjct: 267 GAGSKSDQVAARILKKG 283


>gi|256618846|ref|ZP_05475692.1| ribonuclease HIII [Enterococcus faecalis ATCC 4200]
 gi|256598373|gb|EEU17549.1| ribonuclease HIII [Enterococcus faecalis ATCC 4200]
          Length = 306

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
             W V G DEVG G+  GPV V A  +D + I      G+ DSK+++  +  +L   I  
Sbjct: 90  GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149

Query: 78  SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128
                +     +  ++   +   +         A+  L        P   LID  +   +
Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209

Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                         + F V KG+   +++AAASII++      +    K+  + GF    
Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 266

Query: 178 GYPTAKHQQV--IKEKG 192
           G  +   Q    I +KG
Sbjct: 267 GAGSKSDQVAARILKKG 283


>gi|121534428|ref|ZP_01666251.1| ribonuclease HIII [Thermosinus carboxydivorans Nor1]
 gi|121306921|gb|EAX47840.1| ribonuclease HIII [Thermosinus carboxydivorans Nor1]
          Length = 306

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 89/199 (44%), Gaps = 31/199 (15%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS----- 77
            G DE G+G   GP+V+AA+++D          G+ DSK +S +K + L ++I       
Sbjct: 97  IGSDESGKGDFFGPLVIAAVMVDAATAAALTASGVRDSKLLSDEKAKVLAQRIREICHGR 156

Query: 78  SAIISISSASHQYI------DKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIPEDL 129
            A++ I+ A +  +      +  N++     A   A+E +  +   R AL+D  +    +
Sbjct: 157 FALVEITPAKYNVLYQRFRAEGKNLNHLLAWAHASAIEEVLTRTPCRFALVDKFADESLI 216

Query: 130 PCQAFA------VIKGDS--ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP- 180
             + FA      +++      ++++AAASI+A   R+R +         Y  D   G   
Sbjct: 217 RSRLFAKGREITLVQAPRAEKNIAVAAASILA---RERFLYWIELFRVQYKMDFPKGASA 273

Query: 181 --TAKHQQVIKEKGPSCIH 197
             T   +  ++  G +C+H
Sbjct: 274 AVTDAARAFVQRYGKNCLH 292


>gi|307273446|ref|ZP_07554691.1| ribonuclease HIII [Enterococcus faecalis TX0855]
 gi|307288434|ref|ZP_07568422.1| ribonuclease HIII [Enterococcus faecalis TX0109]
 gi|312904016|ref|ZP_07763184.1| ribonuclease HIII [Enterococcus faecalis TX0635]
 gi|306500605|gb|EFM69934.1| ribonuclease HIII [Enterococcus faecalis TX0109]
 gi|306509973|gb|EFM78998.1| ribonuclease HIII [Enterococcus faecalis TX0855]
 gi|310632492|gb|EFQ15775.1| ribonuclease HIII [Enterococcus faecalis TX0635]
 gi|315147746|gb|EFT91762.1| ribonuclease HIII [Enterococcus faecalis TX4244]
 gi|315165480|gb|EFU09497.1| ribonuclease HIII [Enterococcus faecalis TX1302]
 gi|315578363|gb|EFU90554.1| ribonuclease HIII [Enterococcus faecalis TX0630]
          Length = 305

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
             W V G DEVG G+  GPV V A  +D + I      G+ DSK+++  +  +L   I  
Sbjct: 89  GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148

Query: 78  SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128
                +     +  ++   +   +         A+  L        P   LID  +   +
Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208

Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                         + F V KG+   +++AAASII++      +    K+  + GF    
Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 265

Query: 178 GYPTAKHQQV--IKEKG 192
           G  +   Q    I +KG
Sbjct: 266 GAGSKSDQVAARILKKG 282


>gi|256965338|ref|ZP_05569509.1| ribonuclease HIII [Enterococcus faecalis HIP11704]
 gi|257089671|ref|ZP_05584032.1| ribonuclease HIII [Enterococcus faecalis CH188]
 gi|256955834|gb|EEU72466.1| ribonuclease HIII [Enterococcus faecalis HIP11704]
 gi|256998483|gb|EEU85003.1| ribonuclease HIII [Enterococcus faecalis CH188]
          Length = 306

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
             W V G DEVG G+  GPV V A  +D + I      G+ DSK+++  +  +L   I  
Sbjct: 90  GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149

Query: 78  SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128
                +     +  ++   +   +         A+  L        P   LID  +   +
Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209

Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                         + F V KG+   +++AAASII++      +    K+  + GF    
Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 266

Query: 178 GYPTAKHQQV--IKEKG 192
           G  +   Q    I +KG
Sbjct: 267 GAGSKSDQVAARILKKG 283


>gi|257415885|ref|ZP_05592879.1| ribonuclease HIII [Enterococcus faecalis AR01/DG]
 gi|257157713|gb|EEU87673.1| ribonuclease HIII [Enterococcus faecalis ARO1/DG]
          Length = 306

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
             W V G DEVG G+  GPV V A  +D + I      G+ DSK+++  +  +L   I  
Sbjct: 90  GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149

Query: 78  SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128
                +     +  ++   +   +         A+  L        P   LID  +   +
Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209

Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                         + F V KG+   +++AAASII++      +    K+  + GF    
Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 266

Query: 178 GYPTAKHQQV--IKEKG 192
           G  +   Q    I +KG
Sbjct: 267 GAGSKSDQVAARILKKG 283


>gi|257082772|ref|ZP_05577133.1| ribonuclease HIII [Enterococcus faecalis E1Sol]
 gi|256990802|gb|EEU78104.1| ribonuclease HIII [Enterococcus faecalis E1Sol]
          Length = 306

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
             W V G DEVG G+  GPV V A  +D + I      G+ DSK+++  +  +L   I  
Sbjct: 90  GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149

Query: 78  SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128
                +     +  ++   +   +         A+  L        P   LID  +   +
Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209

Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                         + F V KG+   +++AAASII++      +    K+  + GF    
Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 266

Query: 178 GYPTAKHQQV--IKEKG 192
           G  +   Q    I +KG
Sbjct: 267 GAGSKSDQVAARILKKG 283


>gi|112490233|pdb|2D0A|A Chain A, Crystal Structure Of Bst-Rnase Hiii
 gi|112490235|pdb|2D0B|A Chain A, Crystal Structure Of Bst-Rnase Hiii In Complex With Mg2+
 gi|112490237|pdb|2D0C|A Chain A, Crystal Structure Of Bst-Rnase Hiii In Complex With Mn2+
 gi|47522551|dbj|BAD20196.1| ribonuclease HIII [Geobacillus stearothermophilus]
          Length = 310

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 69/177 (38%), Gaps = 29/177 (16%)

Query: 17  MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELY 72
              +       G DEVG G   GP+VVAA  +D  +I      G+ DSK+++ +  + + 
Sbjct: 84  AAHQLGSLSAIGSDEVGTGDYFGPIVVAAAYVDRPHIAKIAALGVKDSKQLNDEAIKRIA 143

Query: 73  EKITSSAIISISSASHQYIDKHN------------IHKATLDAIYHAVENLQVIPRSALI 120
             I  +   +++   +   ++              +H  TL  +  A+      P + +I
Sbjct: 144 PAIMETVPHAVTVLDNPQYNRWQRSGMPQTKMKALLHNRTLVKLVDAIA--PAEPEAIII 201

Query: 121 DGR-----------SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166
           D                  +  +   + K +S+ +S+AAASIIA+      M    +
Sbjct: 202 DEFLKRDSYFRYLSDEDRIIRERVHCLPKAESVHVSVAAASIIARYVFLEEMEQLSR 258


>gi|300175420|emb|CBK20731.2| unnamed protein product [Blastocystis hominis]
          Length = 539

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSSAI 80
            + GIDE GRG + GP+V AA       +      G +DSKK +  +R+   + I  +  
Sbjct: 451 VIVGIDEAGRGPVVGPMVYAAAYWAKSKNEEISNLGFDDSKKFTSGQRDGFRKTIDETGS 510

Query: 81  IS--ISSASHQYIDKHNI 96
           I   I S S + I  + +
Sbjct: 511 IGYLIRSLSPKEISANML 528


>gi|293364827|ref|ZP_06611544.1| ribonuclease HIII [Streptococcus oralis ATCC 35037]
 gi|307703076|ref|ZP_07640023.1| ribonuclease HIII [Streptococcus oralis ATCC 35037]
 gi|291316277|gb|EFE56713.1| ribonuclease HIII [Streptococcus oralis ATCC 35037]
 gi|307623469|gb|EFO02459.1| ribonuclease HIII [Streptococcus oralis ATCC 35037]
          Length = 293

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 81/200 (40%), Gaps = 29/200 (14%)

Query: 24  WPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKITS-- 77
           +P+ G DEVG G+  G + VVA+ +    +      G+ DSK ++ +K  ++   +    
Sbjct: 78  FPMIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 78  --SAIISISSASHQYIDKH----NIHKATLDAIYHAVENLQVIPRSALIDGRSIPED--- 128
              A++   S  ++ I +     ++  A  +     +    V P   +IDG + P++   
Sbjct: 138 SHQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQKGVQPEKIVIDGFTSPKNYDK 197

Query: 129 --------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
                    P +     K +   L++A +SIIA   RD  +        + G+    G  
Sbjct: 198 YLAQEANRFPNKITLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAG 254

Query: 181 TAKHQQV---IKEKGPSCIH 197
           TA  +     ++  G   +H
Sbjct: 255 TASDKVASKILQAYGMKGLH 274


>gi|162447673|ref|YP_001620805.1| ribonuclease HIII [Acholeplasma laidlawii PG-8A]
 gi|161985780|gb|ABX81429.1| ribonuclease HIII [Acholeplasma laidlawii PG-8A]
          Length = 285

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 71/177 (40%), Gaps = 23/177 (12%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR 68
            +++ +   N   + G DEVG G   GPVVV +      +I      G+ DSK +++K+ 
Sbjct: 64  AIKSFLNITNYAAI-GSDEVGTGDALGPVVVCSAYASIEDIEFLEKLGVKDSKSMTNKEI 122

Query: 69  EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS--------ALI 120
            +L   I +    SI   + +  ++       L+ I   + N  +I  +         ++
Sbjct: 123 VKLGPVIANRLTHSIVILTPEKFNEQTQKGLNLNKIKALLHNHMIIKTTSKVEAAVPVIL 182

Query: 121 DGRSIPEDLPC----------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
           D   +P                     K +S+ LS+AAASIIA+      M    KK
Sbjct: 183 DQFCLPTHYFNYLKDEKLVYRDVEFYTKAESVHLSVAAASIIARYAFLVKMHQYSKK 239


>gi|70726822|ref|YP_253736.1| ribonuclease HIII [Staphylococcus haemolyticus JCSC1435]
 gi|123659928|sp|Q4L5E5|RNH3_STAHJ RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|68447546|dbj|BAE05130.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 310

 Score = 69.7 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 80/201 (39%), Gaps = 30/201 (14%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI 75
             N +   G DE G G   GP+ V A  +   N+      G++DSKK++ +K  EL E++
Sbjct: 87  AYNHYNCIGSDEAGSGDYFGPLTVCAAYVSKENVKILKTLGVDDSKKLNDQKIIELAEQL 146

Query: 76  TSSAIISISSAS-HQYIDKHNIHKATLDA----IYHAVENLQVIP-----RSALIDGRSI 125
            +    S+ +    +Y D+  I  + +         A++N+            +ID  ++
Sbjct: 147 ITFIPHSLLTLDNPKYNDRQAIGWSQVKMKAELHNEAIKNVTQKINCNELNYIVIDQFAV 206

Query: 126 P----------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
                         P +     KG+S SL+IAAASII++    + M     K      D 
Sbjct: 207 RGVYQRYALSSLPYPEKTKFETKGESKSLAIAAASIISRYAFVKHMDHISHKMKQ---DI 263

Query: 176 HVGYPTAKHQ---QVIKEKGP 193
             G          Q+I + G 
Sbjct: 264 PKGASNKVDLIAAQIIDKHGI 284


>gi|295112808|emb|CBL31445.1| ribonuclease HIII [Enterococcus sp. 7L76]
 gi|315145573|gb|EFT89589.1| ribonuclease HIII [Enterococcus faecalis TX2141]
 gi|315160341|gb|EFU04358.1| ribonuclease HIII [Enterococcus faecalis TX0645]
          Length = 305

 Score = 69.7 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
             W V G DEVG G+  GPV V A  +D + I      G+ DSK+++  +  +L   I  
Sbjct: 89  GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKSLGVRDSKELTDPQIIQLSHVIKE 148

Query: 78  SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128
                +     +  ++   +   +         A+  L        P   LID  +   +
Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208

Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                         + F V KG+   +++AAASII++      +    K+  + GF    
Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 265

Query: 178 GYPTAKHQQV--IKEKG 192
           G  +   Q    I +KG
Sbjct: 266 GAGSKSDQVAARILKKG 282


>gi|257419087|ref|ZP_05596081.1| ribonuclease HIII [Enterococcus faecalis T11]
 gi|257160915|gb|EEU90875.1| ribonuclease HIII [Enterococcus faecalis T11]
          Length = 306

 Score = 69.7 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
             W V G DEVG G+  GPV V A  +D + I      G+ DSK+++  +  +L   I  
Sbjct: 90  GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKSLGVRDSKELTDPQIIQLSHVIKE 149

Query: 78  SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128
                +     +  ++   +   +         A+  L        P   LID  +   +
Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209

Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                         + F V KG+   +++AAASII++      +    K+  + GF    
Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 266

Query: 178 GYPTAKHQQV--IKEKG 192
           G  +   Q    I +KG
Sbjct: 267 GAGSKSDQVAARILKKG 283


>gi|29375836|ref|NP_814990.1| ribonuclease HIII [Enterococcus faecalis V583]
 gi|227553052|ref|ZP_03983101.1| ribonuclease HIII [Enterococcus faecalis HH22]
 gi|81585389|sp|Q835V5|RNH3_ENTFA RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|29343298|gb|AAO81060.1| ribonuclease HIII [Enterococcus faecalis V583]
 gi|227177795|gb|EEI58767.1| ribonuclease HIII [Enterococcus faecalis HH22]
 gi|315575679|gb|EFU87870.1| ribonuclease HIII [Enterococcus faecalis TX0309B]
 gi|315579877|gb|EFU92068.1| ribonuclease HIII [Enterococcus faecalis TX0309A]
          Length = 305

 Score = 69.7 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77
             W V G DEVG G+  GPV V A  +D + I      G+ DSK+++  +  +L   I  
Sbjct: 89  GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKSLGVRDSKELTDPQIIQLSHVIKE 148

Query: 78  SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128
                +     +  ++   +   +         A+  L        P   LID  +   +
Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208

Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                         + F V KG+   +++AAASII++      +    K+  + GF    
Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 265

Query: 178 GYPTAKHQQV--IKEKG 192
           G  +   Q    I +KG
Sbjct: 266 GAGSKSDQVAARILKKG 282


>gi|126652673|ref|ZP_01724834.1| ribonuclease HIII [Bacillus sp. B14905]
 gi|126590522|gb|EAZ84640.1| ribonuclease HIII [Bacillus sp. B14905]
          Length = 308

 Score = 69.7 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 25/169 (14%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79
             V G DE G G   GP+ VAA+ +  + I      G+ DSK +S     ++   + ++ 
Sbjct: 93  MSVLGSDETGTGDYFGPITVAAVYVPASKIELINELGVKDSKLLSDDYMRKIAPDLRAAC 152

Query: 80  IISISSASHQYIDKHNI---HKATLDAIYH--AVEN-----LQVIPRSALID-------- 121
           + S+    ++  +        +  + A+ H  A++N         P   LID        
Sbjct: 153 VHSVLVLRNEKYNSLQAKGYSQGKMKAMMHNKALQNTLTKMTPEKPECILIDQFAERGVY 212

Query: 122 GRSIPEDLPCQAFAV---IKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
              +  +      +V    K + + +++A ASI+A+    + M    + 
Sbjct: 213 YNYLKNEREIVQESVYFSTKAEQLHVAVATASILARAAFLKEMDRLSEI 261


>gi|261332533|emb|CBH15528.1| ribonuclease H, putative [Trypanosoma brucei gambiense DAL972]
          Length = 326

 Score = 69.7 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 82/224 (36%), Gaps = 51/224 (22%)

Query: 25  PVAGIDEVGRGALAGPVVV--AAIILDPNNIPF---GINDSKKISHKKREELYEKITSSA 79
            V GIDE GRG + GP+V   A I L  ++      G NDSK ++  +R+ +  K+   A
Sbjct: 40  LVMGIDEAGRGPVVGPMVYTGAMIALHEHDRLVDYCGANDSKVLNEDQRKSVVSKLHELA 99

Query: 80  II--SISSASHQYI-------DKHNIHKATLDAIYHAVENLQV----IPRSALIDGRSIP 126
                    +   I          N++  +       +  L +    +  +A +D    P
Sbjct: 100 TFRTFTVVVTPDEIAAAMTGVHGTNLNTLSHQTAISIISKLTLEGMGMLTAAYVDTVGPP 159

Query: 127 EDLPC---------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
           E             +     K +     +AAAS++AKV RD  +          G D   
Sbjct: 160 ESYQQKLSGRFPHLRVTVAKKAEIKFPIVAAASVVAKVERDSHIERL-------GIDVGS 212

Query: 178 GYPT-AKHQQVIKEKGPSCIHRL------------TFRPLRNLS 208
           GYP+  K    ++      +HR             ++ P+  L+
Sbjct: 213 GYPSDPKVMMWVRSH----VHRFFVMPRECNFVRLSWAPVTQLA 252


>gi|328956934|ref|YP_004374320.1| ribonuclease HIII [Carnobacterium sp. 17-4]
 gi|328673258|gb|AEB29304.1| ribonuclease HIII [Carnobacterium sp. 17-4]
          Length = 332

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 73/182 (40%), Gaps = 27/182 (14%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-- 77
           W V G DEVG G+  GP+ V A   D + +      G+ DSK +   +   + + + +  
Sbjct: 115 WSVIGSDEVGTGSYFGPLTVVAAYADHSQLALLKELGVRDSKDMKDPEIIRVAKDLITFL 174

Query: 78  -SAIISISSASHQYIDKHNI---HKATLD--AIYHAVENLQVI-PRSALIDG-------- 122
             +++++    +  I         KA L   A+ H +E +    P   LID         
Sbjct: 175 PHSLLNVMPEKYNTIQPTMTQGKMKAILHNQALGHVLEKISPQKPDGILIDQFELPATYF 234

Query: 123 ---RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
                 P+ +    +   KG+   LS+AAASIIA+      ++   +     GF    G 
Sbjct: 235 KHINDQPKQIKESVYFQTKGEGHHLSVAAASIIARYA---FLKGLDELSAKAGFKIPSGA 291

Query: 180 PT 181
            +
Sbjct: 292 GS 293


>gi|71747398|ref|XP_822754.1| ribonuclease H [Trypanosoma brucei TREU927]
 gi|70832422|gb|EAN77926.1| ribonuclease H, putative [Trypanosoma brucei]
          Length = 326

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 82/224 (36%), Gaps = 51/224 (22%)

Query: 25  PVAGIDEVGRGALAGPVVV--AAIILDPNNIPF---GINDSKKISHKKREELYEKITSSA 79
            V GIDE GRG + GP+V   A I L  ++      G NDSK ++  +R+ +  K+   A
Sbjct: 40  LVMGIDEAGRGPVVGPMVYTGAMIALHEHDRLVDYCGANDSKVLNEDQRKSVVSKLHELA 99

Query: 80  II--SISSASHQYI-------DKHNIHKATLDAIYHAVENLQV----IPRSALIDGRSIP 126
                    +   I          N++  +       +  L +    +  +A +D    P
Sbjct: 100 TFRTFTVVVTPDEIAAAMTGAHGTNLNTLSHQTAISIISKLTLEGMGMLTAAYVDTVGPP 159

Query: 127 EDLPC---------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
           E             +     K +     +AAAS++AKV RD  +          G D   
Sbjct: 160 ESYQQKLSGRFPHLRVTVAKKAEIKFPIVAAASVVAKVERDSHIERL-------GIDVGS 212

Query: 178 GYPT-AKHQQVIKEKGPSCIHRL------------TFRPLRNLS 208
           GYP+  K    ++      +HR             ++ P+  L+
Sbjct: 213 GYPSDPKVMMWVRSH----VHRFFVMPRECNFVRLSWAPVTQLA 252


>gi|313633654|gb|EFS00411.1| ribonuclease hiii [Listeria seeligeri FSL N1-067]
          Length = 296

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 25/154 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78
           V G DEVG G   GP+ V A  ++   +P     G+ DSK +   +   + EKI      
Sbjct: 81  VLGSDEVGTGDFFGPITVCAAYVEETIMPLLKELGVKDSKAMKDPEICRIAEKIMPVVPH 140

Query: 79  AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123
           +++   +  +  +    +++  + A     A+EN+        P + LID          
Sbjct: 141 SVLLCPNPKYNEMQSRGMNQGQMKALLHNRALENVLKKIAPTKPEAILIDQFAEKNTYYR 200

Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                P  +    F   K + + LS+AAASIIA+
Sbjct: 201 YLAKEPTIIRENVFFATKAEGLHLSVAAASIIAR 234


>gi|331266981|ref|YP_004326611.1| ribonuclease HIII [Streptococcus oralis Uo5]
 gi|326683653|emb|CBZ01271.1| ribonuclease HIII [Streptococcus oralis Uo5]
          Length = 293

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 29/197 (14%)

Query: 27  AGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKITSS 78
            G DEVG G+  G + VVA+ +    +      G+ DSK ++ +K  +L     EKI   
Sbjct: 81  IGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQLAPILKEKIQHQ 140

Query: 79  AIISISSASHQYIDKH----NIHKATLDAIYHAVENLQVIPRSALIDGRSIPED------ 128
           A++   S  ++ I +     ++  A  +     +    V P   +ID  + P++      
Sbjct: 141 ALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQKGVQPEKIVIDAFTSPKNYDKYLA 200

Query: 129 -----LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
                 P +     K +   L++A +SIIA   RD  +        + G+    G  TA 
Sbjct: 201 QEANRFPNKITLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAGTAS 257

Query: 184 HQQV---IKEKGPSCIH 197
            +     ++  G   +H
Sbjct: 258 DKVASKILQAYGMKGLH 274


>gi|163791555|ref|ZP_02185959.1| ribonuclease HIII [Carnobacterium sp. AT7]
 gi|159873191|gb|EDP67291.1| ribonuclease HIII [Carnobacterium sp. AT7]
          Length = 312

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 28/174 (16%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-- 77
           W V G DEVG G+  GP+ V A  +D + +      G+ DSK++   +   + + + +  
Sbjct: 95  WSVIGSDEVGTGSYFGPLTVVAAYVDQSQLALLKELGVRDSKEMKDSEIIRVAKDLITFL 154

Query: 78  -SAIISISSASHQYIDKHNI---HKATLD--AIYHAVENLQV-IPRSALIDGRSIPEDL- 129
             +++++    +  I         KA L   A+ H +E ++   P   LID   +P    
Sbjct: 155 PHSLLNVMPEKYNAIQPTMTQGKMKAILHNQALGHVLEKIKPKKPDGILIDQFELPATYF 214

Query: 130 ------PCQAFAVI----KGDSISLSIAAASIIAKVTR----DRLMRIAHKKYP 169
                 P Q    I    KG+   L++AAASIIA+       D L   A  K P
Sbjct: 215 KHISDQPKQIKETIYFQTKGEGHHLAVAAASIIARYAFLKGLDELTAQAGMKIP 268


>gi|289434477|ref|YP_003464349.1| ribonuclease HIII, putative [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170721|emb|CBH27261.1| ribonuclease HIII, putative [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 296

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 25/154 (16%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78
           V G DEVG G   GP+ V A  ++   +P     G+ DSK +   +   + EKI      
Sbjct: 81  VLGSDEVGTGDFFGPITVCAAYVEETIMPLLKELGVKDSKAMKDPEICRIAEKIMPVVPH 140

Query: 79  AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123
           +++   +  +  +    +++  + A     A+EN+        P + LID          
Sbjct: 141 SVLLCPNPKYNEMQSRGMNQGQMKALLHNRALENVLKKIAPTKPEAILIDQFAEKNTYYR 200

Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154
                P  +    F   K + + LS+AAASIIA+
Sbjct: 201 YLAKEPTIIRENVFFATKAEGLHLSVAAASIIAR 234


>gi|194246531|ref|YP_002004170.1| Ribonuclease HIII [Candidatus Phytoplasma mali]
 gi|254808013|sp|B3R0F3|RNH3_PHYMT RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|193806888|emb|CAP18317.1| Ribonuclease HIII [Candidatus Phytoplasma mali]
          Length = 288

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 23/178 (12%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKK 67
             ++ ++  K+   + G DEVG G + G +VV +  +   NIPF     I DSKK++ +K
Sbjct: 65  LNIKEILNIKDYSAI-GSDEVGTGDVFGSIVVCSSYVSAENIPFLENLNIKDSKKLTDEK 123

Query: 68  REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR---- 123
             +L  KI +    S+ S +    +        L+ I   + N  ++     I       
Sbjct: 124 IIQLVPKIINKITYSLISINPYKYNILTNKGFNLNKIKAILHNDMILKNLIKIKKNVNVI 183

Query: 124 --------------SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                            + +  + F   K + + +S+AAASIIA+    + +    KK
Sbjct: 184 LDKFTSSKNYFNYLKNEKKVYKKIFFCNKAEKVHISVAAASIIARYAFLKNIFALSKK 241


>gi|322374879|ref|ZP_08049393.1| ribonuclease HIII [Streptococcus sp. C300]
 gi|321280379|gb|EFX57418.1| ribonuclease HIII [Streptococcus sp. C300]
          Length = 293

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 81/213 (38%), Gaps = 30/213 (14%)

Query: 12  FELEAMVREKNM-WPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHK 66
           F  E         +P+ G DEVG G+  G + VVA+ +           G+ DSK ++ +
Sbjct: 65  FGYEVQQENSGQDFPMIGTDEVGNGSYFGGLAVVASFVTPDQYDFLRKLGVGDSKTLTDQ 124

Query: 67  KREELYEKITS----SAIISISSASHQYIDKH----NIHKATLDAIYHAVENLQVIPRSA 118
           K  ++   +       A++   S  ++ I +     ++  A  +     +    V P   
Sbjct: 125 KIRQIAPILKEKIPHQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQKGVQPEKI 184

Query: 119 LIDGRSIPED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
           +ID  + P++            P +     K +   L++A +SIIA   RD  +      
Sbjct: 185 VIDAFTSPKNYDKYLAQEANRFPNKISLEEKAEGKYLAVAVSSIIA---RDLFLENLENL 241

Query: 168 YPDYGFDSHVGYPTAKHQQV---IKEKGPSCIH 197
             + G+    G  TA  +     ++  G   +H
Sbjct: 242 GRELGYQLPSGAGTASDKVASKILQAYGMKGLH 274


>gi|47213806|emb|CAF92579.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 115

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKI-TSSAIIS 82
           GIDE GRG + GP+V        +         + DSK ++  +RE L+EK+  + + I 
Sbjct: 32  GIDEAGRGPVLGPMVYGICFCPISRKDELKDLKVADSKTLTEAEREALFEKLDEAKSYIG 91

Query: 83  IS--SASHQYIDKHNI 96
            +    S   I    +
Sbjct: 92  WALQVLSPNTISTSML 107


>gi|225155691|ref|ZP_03724179.1| ribonuclease HIII [Opitutaceae bacterium TAV2]
 gi|224803485|gb|EEG21720.1| ribonuclease HIII [Opitutaceae bacterium TAV2]
          Length = 356

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 75/206 (36%), Gaps = 44/206 (21%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS----- 77
           AG+DE G+G   GPVV A +I + + I      G+ DSKKI+  +  EL   I       
Sbjct: 108 AGLDESGKGDFFGPVVAATVIAEKSAIEAWRKAGVQDSKKITENRILELDRLIRETPGVV 167

Query: 78  -SAIISISSASHQYIDKHNIHKATLDAIYHA---VENLQVIPRS-ALIDGRS-------- 124
              +       ++ + +       L A  HA   ++ L   P    L+D  S        
Sbjct: 168 ARTLYCGMPKYNELMARPRASLNKLLAWQHAKALLQALGEKPVHWGLLDQFSEQPLVQRE 227

Query: 125 -------------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171
                                     K +     +AAASI+A+    R+MR   K++   
Sbjct: 228 LKRLASPPPPPAPALLPPGFDLRMRTKAEE-DPVVAAASIVARAEYVRIMRELSKRF--- 283

Query: 172 GFDSHVGYP----TAKHQQVIKEKGP 193
           G     G      T  H ++I++ G 
Sbjct: 284 GAPLQKGASALVKTQAH-EIIRKFGV 308


>gi|299535515|ref|ZP_07048836.1| ribonuclease HIII [Lysinibacillus fusiformis ZC1]
 gi|298728715|gb|EFI69269.1| ribonuclease HIII [Lysinibacillus fusiformis ZC1]
          Length = 307

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 65/169 (38%), Gaps = 25/169 (14%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79
             V G DE G G   GP+ VAA+ +  + I      G+ DSK ++     ++   + ++ 
Sbjct: 92  MSVLGSDETGTGDYFGPITVAAVYVPTSKIELMNELGVKDSKMLTDDYMRKIAPDLRAAC 151

Query: 80  IISISSASHQYIDKHNI---HKATLDAIYH--AVEN-----LQVIPRSALID-------- 121
           + S+    ++  +        +  + A+ H  A++N         P   LID        
Sbjct: 152 VHSVLVLRNEKYNNLQGKGYSQGKMKAMMHNKALQNTLSKMAPEKPEFILIDQFAERGVY 211

Query: 122 GRSIPEDLPCQAFAV---IKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
              +  +       V    K + + +++A ASI+A+    + M      
Sbjct: 212 YNYLKNERELVQENVYFSTKAEQLHVAVATASILARAAFLKEMDRLSDI 260


>gi|46446313|ref|YP_007678.1| ribonuclease HIII [Candidatus Protochlamydia amoebophila UWE25]
 gi|73917847|sp|Q6MDE6|RNH3_PARUW RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|46399954|emb|CAF23403.1| putative ribonuclease HII [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 301

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 77/212 (36%), Gaps = 40/212 (18%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS 82
            GIDE G+G   GP+ +A + +  N        G+ DSK +S K   +L  +I +  +  
Sbjct: 93  IGIDESGKGDFFGPLCIAGVYIQANQFSKLQALGVKDSKTLSDKTIRQLASQIKNLCLYH 152

Query: 83  ISSASHQYI-----DKHNIHKATLDAIYHAVEN--LQVIPRSALIDG------------- 122
           I   +         D  N++          +E   LQ   ++ ++D              
Sbjct: 153 IVKINPAKYNEIYQDFKNLNHLLAWGHATTIEQLILQSGCQTVIVDQFADEKVVLLALKR 212

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT- 181
           + +  +L  +  A        L++AAASI+A+      +    K+             T 
Sbjct: 213 KKLDVNLTQRHRA-----EDDLAVAAASILARQAFIDGLEQLSKEI-QIPLPKGSSSATQ 266

Query: 182 AKHQQVIKEKG------PSCIHRLTFRPLRNL 207
              ++V+++ G          H   F+ L  +
Sbjct: 267 KAGKEVLRKWGEERLRSICKQH---FKTLDAI 295


>gi|146103342|ref|XP_001469539.1| ribonuclease H [Leishmania infantum]
 gi|134073909|emb|CAM72648.1| putative ribonuclease H [Leishmania infantum JPCM5]
          Length = 316

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 27/170 (15%)

Query: 24  WPVAGIDEVGRGALAGPVVV-AAII-LDPNNIPF---GINDSKKISHKKREELYEKIT-- 76
           + V GI E GRG++ GP+    A+I L  ++       + DSK +  ++R    +++   
Sbjct: 44  YLVLGIGEAGRGSVIGPIFYTGAVISLGEHDDLVRLCHVADSKTLDERRRLASLQQLRLL 103

Query: 77  SSAIISISSASHQYIDK-------HNIHKATLDAIYHAVENL------QVIPRSALIDG- 122
            +        S + I K        N++  + +     +         ++        G 
Sbjct: 104 KTFRSFTVCVSPEEISKTITGRSGRNLNTLSHETAIQIISKATLASAGKLCAAYVGTAGP 163

Query: 123 -----RSIPEDLPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK 166
                  +    P     V K  DS    ++AASI+AK TRD  +    +
Sbjct: 164 PATYQERLAGRFPHLRVTVAKKADSQFPIVSAASIVAKTTRDTAIEALGE 213


>gi|70926382|ref|XP_735739.1| ribonuclease H1 large subunit [Plasmodium chabaudi chabaudi]
 gi|56509666|emb|CAH81806.1| ribonuclease H1 large subunit, putative [Plasmodium chabaudi
           chabaudi]
          Length = 133

 Score = 68.6 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 8/120 (6%)

Query: 18  VREKNMWPV-AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELY 72
           + E     V  GIDE GRG + GP+V +       +        I+DSKKIS   RE+++
Sbjct: 9   LYEFGNEEVRLGIDEAGRGPVLGPMVYSGFYCKKEDEKLLKEMKIDDSKKISENDREKMF 68

Query: 73  EKITSSAI---ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
            K+ +S +     +     Q I    + K   +    + +    I +  L  G ++ E  
Sbjct: 69  YKLNNSTLPFGWRVHVLMPQDISAKMLKKQKYNLNEISHDTAISIIQHVLSRGCNLTEVF 128


>gi|299822574|ref|ZP_07054460.1| ribonuclease H [Listeria grayi DSM 20601]
 gi|299816103|gb|EFI83341.1| ribonuclease H [Listeria grayi DSM 20601]
          Length = 253

 Score = 68.6 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 76/195 (38%), Gaps = 31/195 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78
           V G DEVG G   GP+ V A  +    +P     G+ DSK +   +   + EKI      
Sbjct: 40  VVGSDEVGTGDYFGPITVCAAYVSSEMMPQLTALGVRDSKDMRDPEILTVAEKIIPFVPH 99

Query: 79  AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123
           +++   +  +  + +  +++  + A     A+EN+      + P + LID          
Sbjct: 100 SVLICPNGKYNALQQSGMNQGKMKAILHNRAIENVLKKLAPLHPDAILIDQFAEKGVYYR 159

Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
              + P  +    +   K +   L++AAASIIA   R R ++   +     G     G  
Sbjct: 160 YLANEPSIMRENVYFATKAEGHHLAVAAASIIA---RYRFVKAFEEIQQQVGLPLTKGAG 216

Query: 181 TAKHQQV---IKEKG 192
                +    I+  G
Sbjct: 217 AKVDAEAAEIIRRFG 231


>gi|323490479|ref|ZP_08095686.1| ribonuclease HIII [Planococcus donghaensis MPA1U2]
 gi|323395883|gb|EGA88722.1| ribonuclease HIII [Planococcus donghaensis MPA1U2]
          Length = 309

 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 25/169 (14%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79
             V G DE G G   GP+ VAA  +  + +      G+ DSK+++     ++   +  + 
Sbjct: 89  QSVLGSDETGTGDFFGPITVAACFVPSDKVELAYELGVKDSKQLTDDWMRKVAPDLKRAF 148

Query: 80  IISISSASHQYIDKHNIH-----KATLDAIYHAVENL-----QVIPRSALID-------- 121
             S+ +  +   +K         K        A++++        P + LID        
Sbjct: 149 AHSVLTLKNDKYNKVQAQGWSQGKIKALLHNQALKHVLAKIAPEKPDAILIDQFAERSIY 208

Query: 122 GRSIPEDLPCQAFAV---IKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
            + I E+       V    K + + +S+A ASIIA+V     M     +
Sbjct: 209 YKHIKEETEIVRENVLFSTKAEGLHVSVACASIIARVAFLDEMDRMSTE 257


>gi|295099552|emb|CBK88641.1| Ribonuclease HIII [Eubacterium cylindroides T2-87]
          Length = 170

 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHK 66
               E+    KNM+P AG DEVG G   GPVVV+A+I+   N        I DSK+I+ +
Sbjct: 54  WLSQESSSESKNMFPQAGSDEVGTGDYFGPVVVSAVIVSKENEDVLRNLKIQDSKQINDE 113

Query: 67  KREELYEKITSSAIISISSASHQYID----KHNIHKATLDAIYHAVENL 111
           K   L ++I S    +I   S    +    +HN+          A  NL
Sbjct: 114 KIRVLAKEIKSLCPHTILIVSSSKYNSVHKQHNMVDIKCKLHNQAYLNL 162


>gi|197294741|ref|YP_001799282.1| Ribonuclease HII family protein [Candidatus Phytoplasma
           australiense]
 gi|171854068|emb|CAM12041.1| Ribonuclease HII family protein [Candidatus Phytoplasma
           australiense]
          Length = 301

 Score = 68.2 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 70/172 (40%), Gaps = 22/172 (12%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHKKRE 69
           E    +       G DEVG G + GP++V ++ + P NI F      +++SK++  K   
Sbjct: 77  EKKNTKSYYLESIGSDEVGTGDVFGPIIVCSVYIPPQNITFFQKKIFLSESKQMLDKNII 136

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIHKAT--LDAIYHAVENLQVIPRS-----ALIDG 122
           +    I    I +I +      +K  ++     + A+ H +  LQ + +       ++D 
Sbjct: 137 QTVPLIMDKVIKTIVTLKPSKYNKLIVNNNLNKIKALMHNLSILQTVEKINKAVPVILDQ 196

Query: 123 RSIPEDLP----------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA 164
             +P+              +     K DS  LS+A AS+IA+    + M   
Sbjct: 197 FCLPKLYFNYLKDETSVYQKINFQTKADSNYLSVAVASLIARYYFLKKMNQL 248


>gi|306828934|ref|ZP_07462126.1| ribonuclease HIII [Streptococcus mitis ATCC 6249]
 gi|304429112|gb|EFM32200.1| ribonuclease HIII [Streptococcus mitis ATCC 6249]
          Length = 293

 Score = 68.2 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 80/200 (40%), Gaps = 29/200 (14%)

Query: 24  WPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKITS-- 77
           +P+ G DEVG G+  G + VVA+ +    +      G+ DSK ++ +K  ++   +    
Sbjct: 78  FPMIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 78  --SAIISISSASHQYIDKH----NIHKATLDAIYHAVENLQVIPRSALIDGRSIPED--- 128
              A++   S  ++ I +     ++  A  +     +    V P   +ID  + P++   
Sbjct: 138 PHQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQNGVQPEKIVIDAFTSPKNYDK 197

Query: 129 --------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
                    P +     K +   L++A +SIIA   RD  +        + G+    G  
Sbjct: 198 YLAQEANRFPNKVSLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAG 254

Query: 181 TAKHQQV---IKEKGPSCIH 197
           TA  +     ++  G   +H
Sbjct: 255 TASDKVASKILQAYGMKGLH 274


>gi|269115105|ref|YP_003302868.1| ribonuclease HII [Mycoplasma hominis]
 gi|268322730|emb|CAX37465.1| Ribonuclease HII [Mycoplasma hominis ATCC 23114]
          Length = 232

 Score = 67.8 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 71/190 (37%), Gaps = 34/190 (17%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI 75
            KN+  + G+DE G G    PV+  A  +  +NI      G+ DSKK+S K+  E++ +I
Sbjct: 2   NKNLDELIGVDETGVGDYFSPVISVACYIPKDNIEKLKQIGVKDSKKLSDKRIIEIFNQI 61

Query: 76  TSSAII--------SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP- 126
            +              +      I+ + I         + +           ID  +   
Sbjct: 62  ENLVYYQKTCLSQSGYNKLIDAGINNNEIKTLIHSNSINILTKKLNQNIDVFIDQYTTSL 121

Query: 127 ---------------EDLPCQAFAVI---KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
                           D       +I   KG+  SL++AAASII   +R  L+    ++ 
Sbjct: 122 EVLQKHFKKLQAISWLDFKKPQNEIIIETKGEEKSLAVAAASII---SRKFLIDWMQQQN 178

Query: 169 PDYGFDSHVG 178
             Y F+  +G
Sbjct: 179 KKYNFEFKLG 188


>gi|157364353|ref|YP_001471120.1| ribonuclease HII/HIII [Thermotoga lettingae TMO]
 gi|157314957|gb|ABV34056.1| ribonuclease HII/HIII [Thermotoga lettingae TMO]
          Length = 305

 Score = 67.8 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 85/206 (41%), Gaps = 23/206 (11%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKIT 76
           KN+ P  G DEVG+G + GPVVV A+ +            I DSK I+ +K  E+ +KI 
Sbjct: 97  KNILPAIGSDEVGKGDVFGPVVVTAVYIGCKEYVALKDVDIKDSKSINDRKILEISKKIK 156

Query: 77  SSAIISISSASHQYIDKHNIHKATLDAIYHA-----VENLQVIPRSALID-GRSIPEDLP 130
           +    +I     + +++  I+   L    H      V   +    +   D G        
Sbjct: 157 NICPHAIVVFEPERLNEKKINMNRLLEQMHIDAISRVLEKRSSLIAVYDDFGAKKDRMRS 216

Query: 131 CQAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD---YGFDSHVGYPTAKH- 184
            +   +I  K    +L++AAASI+++      +    K Y      G  S+    T +  
Sbjct: 217 VEQLTLIGFKNGERNLAVAAASIVSRAEFLNWIETRSKFYEMEIPLG-ASNK---TIEFI 272

Query: 185 QQVIKEKGPSC---IHRLTFRPLRNL 207
           +Q IK+ G      I +L F  +R  
Sbjct: 273 RQFIKKYGLEELKKIAKLCFSNVRKF 298


>gi|229823968|ref|ZP_04450037.1| hypothetical protein GCWU000282_01272 [Catonella morbi ATCC 51271]
 gi|229786322|gb|EEP22436.1| hypothetical protein GCWU000282_01272 [Catonella morbi ATCC 51271]
          Length = 319

 Score = 67.8 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 31/174 (17%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS-- 77
           W + G DEVG G+  G + V A+ LD  +       G+ DSK ++  +  +L  K+    
Sbjct: 98  WTIIGSDEVGNGSYFGALTVCAVYLDAGDRAKIEGLGVKDSKLLTDAQILDLAPKLRQVL 157

Query: 78  -SAIISISSASHQYIDKHNIHKAT-----------LDAIYHAVENLQVIPRSALIDGRSI 125
              +   S A +   +K     A            L A   A + L +     LID  + 
Sbjct: 158 THELTICSPAKYNEANKTRNANAIKVSLHNFTIQKLLAKLSARQKLALQ--GILIDEFTS 215

Query: 126 PED----LPCQAFAVI-------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
           P++    L  +A  +        KG+S  L++A ASIIA+      +      Y
Sbjct: 216 PQNYFNYLKKEAHPLTKGLYFAEKGESAHLAVACASIIARAWFLESLTTFGAPY 269


>gi|332364764|gb|EGJ42533.1| ribonuclease HIII [Streptococcus sanguinis SK1059]
          Length = 296

 Score = 67.8 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 82/217 (37%), Gaps = 34/217 (15%)

Query: 2   FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGI 57
           F    PE+      +    +N   + G DEVG G+  G + VVA+ +    +      G+
Sbjct: 64  FFGHQPEKSS----SSTASQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGV 118

Query: 58  NDSKKISHKKREELYEKITS----SAIISISSASHQYI----DKHNIHKATLDAIYHAVE 109
            DSK ++  K  +L   +       A++      ++ I    +  ++  A  +   + + 
Sbjct: 119 GDSKTLNDSKIHQLAPVLKEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLL 178

Query: 110 NLQVIPRSALIDGRSIPED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRD 158
              + P   +ID  +  ++            P     + K +   L++A +SIIA   RD
Sbjct: 179 QKGINPEKIVIDAFTSKQNYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIA---RD 235

Query: 159 RLMRIAHKKYPDYGFDSHVGYPTA-KHQ--QVIKEKG 192
             +        + G+    G  +   H   Q+++  G
Sbjct: 236 LFLENLENLSQELGYTLPSGAGSKSDHIASQILRAYG 272


>gi|295399299|ref|ZP_06809281.1| ribonuclease HIII [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978765|gb|EFG54361.1| ribonuclease HIII [Geobacillus thermoglucosidasius C56-YS93]
          Length = 306

 Score = 67.8 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 64/160 (40%), Gaps = 22/160 (13%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELYEKITSSAII 81
            G DE G+G   GP+V A+ +L   +     I  G+ DSKKIS+K+   L  +I      
Sbjct: 99  IGTDESGKGDFFGPLVTASFLLQSKDAENKLIAIGVTDSKKISNKQIIALASEIKKIGPY 158

Query: 82  SISSASHQYIDKHNIHKATLDA-----IYHAVENL-----------QVIPRSALIDGRSI 125
           SI     +  ++       L+         A+EN+                  +I    +
Sbjct: 159 SIVKIGPKKYNELYAKIGNLNNLLGWSHARAIENILTKYNCSVAVADQFGDEKIIKNSLL 218

Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165
                 + +   KG++  +++AAASI+A+    + +    
Sbjct: 219 KNGKEIKLYQFHKGEN-DIAVAAASILARSEFLQFINELE 257


>gi|289808317|ref|ZP_06538946.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
          Typhi str. AG3]
          Length = 50

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/39 (61%), Positives = 28/39 (71%)

Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           VAG+DEVGRG L G VV AA+ILDP     G+ND +KI
Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDYQKI 49


>gi|163782002|ref|ZP_02177001.1| hypothetical protein HG1285_17754 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882534|gb|EDP76039.1| hypothetical protein HG1285_17754 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 272

 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 23/189 (12%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPVV-VAAIILDPNNIP---FGINDSKKISH---- 65
           LE +  E    P+AG DEVG+G L GP+V   A++   N          DSK +      
Sbjct: 70  LERI--EAPEGPLAGCDEVGKGDLFGPLVLCCAVVNPENFKKVLSLSPKDSKSMKDDELL 127

Query: 66  KKREELYEKITSSAIISISSASHQ-YIDKHNIHKATLDAIYHAVENL--QVIPRSALIDG 122
           K+ E+L + +    I+ +    ++ Y +  NI++   DA    V+++     P   +ID 
Sbjct: 128 KRAEKLKKYVNRRCIVLMPERFNELYREYGNINRLMDDAYRKLVQSIVRDFRPVRVVID- 186

Query: 123 RSIPEDLPCQAFAVI----KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
                  P Q   V+    KG+   + ++ AS++A   R + +    +   +YG     G
Sbjct: 187 -RYSFRNPFQDMGVVDFLEKGE-RDVVVSVASMLA---RAKFLEKLRELEDNYGLKLPKG 241

Query: 179 YPTAKHQQV 187
             +   +  
Sbjct: 242 ASSEAKRLA 250


>gi|257456663|ref|ZP_05621856.1| ribonuclease HII [Treponema vincentii ATCC 35580]
 gi|257445930|gb|EEV20980.1| ribonuclease HII [Treponema vincentii ATCC 35580]
          Length = 42

 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/37 (56%), Positives = 25/37 (67%)

Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63
           GIDE GRGALAGPV  AA+IL  +     ++DSKK 
Sbjct: 4  CGIDEAGRGALAGPVYAAAVILPASFDVSVLDDSKKT 40


>gi|322503423|emb|CBZ38508.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 316

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 27/170 (15%)

Query: 24  WPVAGIDEVGRGALAGPVVV-AAII-LDPNNIPF---GINDSKKISHKKREELYEK--IT 76
           + V GI E GRG++ GP+    A+I L  ++       + DSK +  ++R    ++  + 
Sbjct: 44  YLVLGIGEAGRGSVIGPIFYTGAVISLGEHDDLVQLCHVADSKTLDERRRLASLQQLHLL 103

Query: 77  SSAIISISSASHQYIDKHNI-----------HKATLDAIYHAVENLQVIPRSALIDGRSI 125
            +        S +   K              H+  +  I  A         +A +     
Sbjct: 104 KTFRSFTVCVSPEEFSKTITGRSGRNLNTLSHETAIQIISEATLASAGKLCAAYVGTAGP 163

Query: 126 PEDLP---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166
           P              +     K DS    ++AASI+AK TRD  +    +
Sbjct: 164 PATYQEGLAGRFPHLRVTVAKKADSQFPIVSAASIVAKTTRDTAIEALGE 213


>gi|306825816|ref|ZP_07459155.1| ribonuclease HIII [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432177|gb|EFM35154.1| ribonuclease HIII [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 293

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 81/200 (40%), Gaps = 29/200 (14%)

Query: 24  WPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKI 75
           +P+ G DEVG G+  G + VVA+ +    +      G+ DSK ++ +K  ++     EKI
Sbjct: 78  FPMIGTDEVGNGSYFGALAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYIDKH----NIHKATLDAIYHAVENLQVIPRSALIDGRSIPED--- 128
              A++   S  ++ I +     ++  A  +     +    V P   +ID  +  ++   
Sbjct: 138 QHQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQKGVQPEKIVIDAFTSAKNYDK 197

Query: 129 --------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
                    P +     K +   L++A +SIIA   RD  +        + G+    G  
Sbjct: 198 YLAQEANHFPNKITLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAG 254

Query: 181 TAKHQQV---IKEKGPSCIH 197
           TA  +     ++  G   +H
Sbjct: 255 TASDKVASKILQAYGMKGLH 274


>gi|23099583|ref|NP_693049.1| ribonuclease HIII [Oceanobacillus iheyensis HTE831]
 gi|81746030|sp|Q8EPH7|RNH3_OCEIH RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|22777813|dbj|BAC14084.1| ribonuclease HIII (RNase HIII) [Oceanobacillus iheyensis HTE831]
          Length = 308

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 75/189 (39%), Gaps = 29/189 (15%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDS 60
           S+ ++  +  +A +   N     G DE G G   GP+ VAA+             G+ DS
Sbjct: 76  SLEQKHSYSPQAELFTDNH---IGSDEAGTGDYFGPITVAALFATKEQQLKLKQIGVRDS 132

Query: 61  KKISHKKREELYEKI----TSSAIISISSASHQYIDKHNIHKATLDA--IYHAVENLQVI 114
           K ++  K +++ ++I       +++ + +  +  +      +  + A   +HA++ L   
Sbjct: 133 KHLNDTKIKQIAKEIAHLQIPYSLLLLPNGKYNKLQAKGWSQGKMKAMLHHHAIDKLLQK 192

Query: 115 PR-----SALIDGRSIPE-----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRD 158
                    +ID    P             L      + K +S S+S+AAASI+A+    
Sbjct: 193 IDVRSLKGIVIDQFCQPPVYKKYLQSEKKTLHPNTTFITKAESHSISVAAASILARARFV 252

Query: 159 RLMRIAHKK 167
             M    ++
Sbjct: 253 NAMDELSEE 261


>gi|217967101|ref|YP_002352607.1| ribonuclease HII/HIII [Dictyoglomus turgidum DSM 6724]
 gi|217336200|gb|ACK41993.1| ribonuclease HII/HIII [Dictyoglomus turgidum DSM 6724]
          Length = 424

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 28/174 (16%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK----------REEL 71
           N   V G DEVG+G + GP++   +++  + I    ++ K    KK           + L
Sbjct: 80  NKDYVLGFDEVGKGEVFGPIITCGVLIRKDVISQIPSELKTPDTKKSHGFEYWTRILKVL 139

Query: 72  YEKITSSAIISISSASHQYIDKHNIHKAT----LDAIYHAVENLQVIPR-SALIDGRSIP 126
            + I+      I     + ID+ NI++      +  I   + +L        +ID   + 
Sbjct: 140 EDLISDGFYYIIDIIQPREIDRFNINQLLDLSYMKLIKQLITDLPYRKEVRIVIDDYGVG 199

Query: 127 EDLPCQAFAVIKGDSISLSI------------AAASIIAKVTRDRLMRIAHKKY 168
           E L  +   +IKG++   +I              AS+IAK  R+ +++   ++Y
Sbjct: 200 EGL-QRFLEIIKGENNFETIIVTESEDKFLEAKLASLIAKSYRESILKNLQERY 252


>gi|125717223|ref|YP_001034356.1| ribonuclease HIII [Streptococcus sanguinis SK36]
 gi|125497140|gb|ABN43806.1| Ribonuclease HIII, putative [Streptococcus sanguinis SK36]
          Length = 322

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 75/199 (37%), Gaps = 30/199 (15%)

Query: 20  EKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKI 75
            +N   + G DEVG G+  G + VVA+ +    +      G+ DSK  +  K  +L   +
Sbjct: 104 SQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTFNDNKIRQLAPVL 162

Query: 76  TS----SAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
                  A++      ++ I    +  ++  A  +     +    + P   +ID  +  +
Sbjct: 163 KEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIFLLLQKGINPEKIVIDAFTSQQ 222

Query: 128 D-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
           +            P     + K +   L++A +SIIA   RD  +        + G+   
Sbjct: 223 NYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIA---RDLFLENLENLSQELGYALP 279

Query: 177 VGYPTA-KHQ--QVIKEKG 192
            G  +   H   Q+++  G
Sbjct: 280 SGAGSKSDHVASQILQAYG 298


>gi|281358639|ref|ZP_06245117.1| ribonuclease HIII [Victivallis vadensis ATCC BAA-548]
 gi|281314869|gb|EFA98904.1| ribonuclease HIII [Victivallis vadensis ATCC BAA-548]
          Length = 315

 Score = 66.2 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 81/212 (38%), Gaps = 36/212 (16%)

Query: 28  GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKI-SHKKREELYEKITSSA--I 80
           GIDE G+G   GP+ +A +  D    P     G  DSK I S KK  EL + I   A   
Sbjct: 98  GIDESGKGDFFGPLCIAGVYADAETGPELRKLGCCDSKLIKSPKKILELAKGIREIARDQ 157

Query: 81  ISISSASHQYIDKH-----NIHKATLDAIYHAVENL------------QVIPRSALIDGR 123
            ++ +   +  ++      N+++         +ENL                  +LI   
Sbjct: 158 YAVVNLPPETYNRLYDKIGNLNRLLAWGHARVIENLLEKVPECPRMLSDKFADESLIKRA 217

Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
            +      +     K +S  +++AAASI+A+    R M     ++ +  F    G     
Sbjct: 218 LMTRGKQIRMEQRTKAES-DVAVAAASILAREQFLRGMEKLSAEFGET-FPKGAG---PL 272

Query: 184 HQQ----VIKEKGPSCIHRLT---FRPLRNLS 208
            ++    ++++ GP    R     F+    L+
Sbjct: 273 VRETGARILEKHGPGAFARCAKLHFKTYSELT 304


>gi|29840058|ref|NP_829164.1| ribonuclease HIII [Chlamydophila caviae GPIC]
 gi|33301625|sp|Q823W2|RNH3_CHLCV RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|29834406|gb|AAP05042.1| ribonuclease HIII [Chlamydophila caviae GPIC]
          Length = 300

 Score = 66.2 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 67/173 (38%), Gaps = 26/173 (15%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKKREELYEK 74
           E+++ P  G+DE G+G   GP+ +A +         N     I DSK ++  +   L + 
Sbjct: 82  EEDLRPRLGVDESGKGDFFGPLCIAGVYAKDEETLKNLYKTKIQDSKLLNDAQILSLAKT 141

Query: 75  ITSSAIISISSASHQYIDK-----HNIHKATLDAIYHAVENLQVIP-------------- 115
           I +S    +     +  ++     HN++     A    ++ L   P              
Sbjct: 142 IRASCSCDVMILYPEKYNELYGKFHNLNILLAWAHATIIDQLAPRPSGEVFAISDQFASS 201

Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
            S L++     ++        ++ +   + +AAASI+A+      M    +++
Sbjct: 202 ESVLLNALR-KKNTDISVIQKVRAEQ-DIVVAAASILAREAFITAMTKLEQRF 252


>gi|15828771|ref|NP_326131.1| ribonuclease HII (RNase HII) [Mycoplasma pulmonis UAB CTIP]
 gi|14089714|emb|CAC13473.1| RIBONUCLEASE HII (RNASE HII) [Mycoplasma pulmonis]
          Length = 243

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 72/195 (36%), Gaps = 41/195 (21%)

Query: 13  ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKR 68
           EL+  +  K    V GIDE G G    P+V A  ++   N    I  G+ DSKK+S  K 
Sbjct: 11  ELQQELANKK---VLGIDETGVGDYFTPLVAAVAVVSEENVQKLIDLGVKDSKKLSDSKI 67

Query: 69  EELYEKITSS--AIISISSASH----QYIDKHNIHKATLDAIYHAVENLQ-----VIPRS 117
           ++L   I  +  A   ++            K+N ++        A++  +          
Sbjct: 68  QQLASIIKENELAKFKVAHIGPKGYNNMTKKNNANEIKTFVHLKALKEAKFTIKTNDFDC 127

Query: 118 ALIDG----RSIP----------------EDLPCQAFAVIKGDSISLSIAAASIIAKVTR 157
            LID      +I                   +    +   + +S  +S+A ASI+A   R
Sbjct: 128 VLIDQYSTENAIKGYLEKWFDPSMKWAGFRKINKPIYLTYQAESKHISVAVASIMA---R 184

Query: 158 DRLMRIAHKKYPDYG 172
           D L+    +    YG
Sbjct: 185 DFLINKMKEYNALYG 199


>gi|182683372|ref|YP_001835119.1| ribonuclease HIII [Streptococcus pneumoniae CGSP14]
 gi|303255384|ref|ZP_07341450.1| ribonuclease HIII [Streptococcus pneumoniae BS455]
 gi|303259481|ref|ZP_07345458.1| ribonuclease HIII [Streptococcus pneumoniae SP-BS293]
 gi|303262344|ref|ZP_07348287.1| ribonuclease HIII [Streptococcus pneumoniae SP14-BS292]
 gi|303264762|ref|ZP_07350679.1| ribonuclease HIII [Streptococcus pneumoniae BS397]
 gi|303266601|ref|ZP_07352486.1| ribonuclease HIII [Streptococcus pneumoniae BS457]
 gi|303268834|ref|ZP_07354621.1| ribonuclease HIII [Streptococcus pneumoniae BS458]
 gi|238691129|sp|B2ILU9|RNH3_STRPS RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|73916724|gb|AAZ93230.1| RNase HII [Streptococcus pneumoniae]
 gi|73916784|gb|AAZ93260.1| RNase HII [Streptococcus pneumoniae]
 gi|182628706|gb|ACB89654.1| ribonuclease HIII [Streptococcus pneumoniae CGSP14]
 gi|301801316|emb|CBW33999.1| ribonuclease HIII [Streptococcus pneumoniae INV200]
 gi|302597629|gb|EFL64709.1| ribonuclease HIII [Streptococcus pneumoniae BS455]
 gi|302636443|gb|EFL66935.1| ribonuclease HIII [Streptococcus pneumoniae SP14-BS292]
 gi|302639415|gb|EFL69873.1| ribonuclease HIII [Streptococcus pneumoniae SP-BS293]
 gi|302641615|gb|EFL71975.1| ribonuclease HIII [Streptococcus pneumoniae BS458]
 gi|302643845|gb|EFL74107.1| ribonuclease HIII [Streptococcus pneumoniae BS457]
 gi|302645629|gb|EFL75859.1| ribonuclease HIII [Streptococcus pneumoniae BS397]
          Length = 290

 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + VVAA +    +      G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLERELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|315612578|ref|ZP_07887491.1| ribonuclease HIII [Streptococcus sanguinis ATCC 49296]
 gi|315315559|gb|EFU63598.1| ribonuclease HIII [Streptococcus sanguinis ATCC 49296]
          Length = 291

 Score = 65.5 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 81/200 (40%), Gaps = 29/200 (14%)

Query: 24  WPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKI 75
           +P+ G DEVG G+  G + VVA+ +    +      G+ DSK ++ +K  ++     EKI
Sbjct: 78  FPMIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYIDKH----NIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL-- 129
              A++   S  ++ I +     ++  A  +     +    V P   +ID  +  ++   
Sbjct: 138 QHQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQKGVQPEKIVIDAFTSAKNYDK 197

Query: 130 ---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
                    P +     K +   L++A +SIIA   RD  +        + G+    G  
Sbjct: 198 YLAMEANHVPNKITLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAG 254

Query: 181 TAKHQQV---IKEKGPSCIH 197
           TA  +     ++  G   +H
Sbjct: 255 TASDKVASKILQAYGMKGLH 274


>gi|223984561|ref|ZP_03634691.1| hypothetical protein HOLDEFILI_01986 [Holdemania filiformis DSM
           12042]
 gi|223963466|gb|EEF67848.1| hypothetical protein HOLDEFILI_01986 [Holdemania filiformis DSM
           12042]
          Length = 300

 Score = 65.5 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 72/191 (37%), Gaps = 28/191 (14%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS 82
           AG DEVG G   G V V A  ++  ++       +NDSK+I+ +   +    +      S
Sbjct: 91  AGSDEVGTGDYFGSVCVCACAVEQQDLAWLQELKVNDSKQINDEVILQTAPLLMERLAYS 150

Query: 83  ISSASHQYIDKH----NIHKATLDAIYHAVENLQVI----PRSALIDGRSIPEDL--PCQ 132
           +        ++     N+++        A  +L+      P++A++D  +   +    CQ
Sbjct: 151 LLILPPVKYNQIHSQCNMNQIKAILHNQAYVHLKRKRGSLPQAAIVDQFTPEVNYYRYCQ 210

Query: 133 AFAVI--------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184
               +        K +S   ++A AS+IA   R   ++        +      G  +   
Sbjct: 211 GQKEVVRGLHFETKAESHYPAVACASMIA---RCAFLKAWDAMEKQWDMSFTKGAGSVVD 267

Query: 185 QQV---IKEKG 192
           Q     +K+ G
Sbjct: 268 QDGAAFVKKHG 278


>gi|289547944|ref|YP_003472932.1| ribonuclease HIII [Thermocrinis albus DSM 14484]
 gi|289181561|gb|ADC88805.1| ribonuclease HIII [Thermocrinis albus DSM 14484]
          Length = 258

 Score = 65.5 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 60/140 (42%), Gaps = 9/140 (6%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYEKITSSAI 80
           PV G DE G+G + GP+VV   ++ P N    +     D K ++ ++  + +  +     
Sbjct: 75  PVVGCDESGKGDVFGPLVVCCAVVKPENYLKLVQVAPRDGKSLTPQQIAKKFSLMQDLVD 134

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAV--ENLQVIPRS--ALIDGRSIPEDLPCQAFAV 136
           I       + ++        ++ +   +  E L+ +P     ++D  +       +   V
Sbjct: 135 IRCRIMPPEELNALYKDMPNMNRVLTYLYKELLKEVPCQYPIVVDAYASRNPFGPKVTFV 194

Query: 137 IKGDSISLSIAAASIIAKVT 156
            KG+  ++++A ASI A+  
Sbjct: 195 PKGE-KNIAVACASIAARYH 213


>gi|62184923|ref|YP_219708.1| ribonuclease HIII [Chlamydophila abortus S26/3]
 gi|73917845|sp|Q5L6I4|RNH3_CHLAB RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|62147990|emb|CAH63741.1| ribonuclease hIII [Chlamydophila abortus S26/3]
          Length = 300

 Score = 65.5 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 22/171 (12%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKKREELYEK 74
           EK++ P  G+DE G+G   GP+ +A +         N     I DSK ++  +   L + 
Sbjct: 82  EKDLRPRLGVDESGKGDFFGPLCIAGVYARDAETLKNLYKTKIQDSKMLNDNQILALAKT 141

Query: 75  ITSSAIISISSASHQYIDKHNI---HKATLDAIYHA--VENLQVIPR---SALIDGRSIP 126
           I + +   +     +  ++      +   L A  HA  ++ L   P     A+ D  +  
Sbjct: 142 IRACSTYDVMILYPEKYNELYAKFHNLNLLLAWAHATIIDQLAPRPSGEVFAISDQFASS 201

Query: 127 EDLPCQAFAVIKGD---------SISLSIAAASIIAKVTRDRLMRIAHKKY 168
           E +  QA      D            + +AAASI+A+      +    +++
Sbjct: 202 ESVLLQALRKKSTDISVIQKVRAEQDIVVAAASILAREAFIHTITKLEQRF 252


>gi|94991140|ref|YP_599240.1| ribonuclease HIII [Streptococcus pyogenes MGAS10270]
 gi|166226675|sp|Q1JF63|RNH3_STRPD RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|94544648|gb|ABF34696.1| Ribonuclease HIII [Streptococcus pyogenes MGAS10270]
          Length = 300

 Score = 65.5 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 31/200 (15%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKITSSAI 80
           P+ G DEVG G+  G + VVA+ +   ++      G++DSKK+S K  +++   +     
Sbjct: 84  PIIGSDEVGNGSYFGGIAVVASFVDPKDHPFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143

Query: 81  ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI----- 125
                 S +  ++           +I  A  +     +    + P+  +ID  +      
Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203

Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
                     P       K +S  L++A +SIIA   R+  +    +   D G+    G 
Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260

Query: 180 PTAKHQ---QVIKEKGPSCI 196
            +A  +   Q++   G S +
Sbjct: 261 GSASDKVASQLLAAYGMSSL 280


>gi|71904214|ref|YP_281017.1| ribonuclease HIII [Streptococcus pyogenes MGAS6180]
 gi|123639303|sp|Q48RJ8|RNH3_STRPM RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|71803309|gb|AAX72662.1| ribonuclease HIII [Streptococcus pyogenes MGAS6180]
          Length = 300

 Score = 65.5 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 31/200 (15%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKITSSAI 80
           P+ G DEVG G+  G + VVA+ +   ++      G++DSKK+S K  +++   +     
Sbjct: 84  PIIGSDEVGNGSYFGGIAVVASFVDPKDHPFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143

Query: 81  ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI----- 125
                 S +  ++           +I  A  +     +    + P+  +ID  +      
Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNTISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203

Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
                     P       K +S  L++A +SIIA   R+  +    +   D G+    G 
Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260

Query: 180 PTAKHQ---QVIKEKGPSCI 196
            +A  +   Q++   G S +
Sbjct: 261 GSASDKVASQLLAAYGMSSL 280


>gi|270293333|ref|ZP_06199542.1| ribonuclease HIII [Streptococcus sp. M143]
 gi|270278182|gb|EFA24030.1| ribonuclease HIII [Streptococcus sp. M143]
          Length = 293

 Score = 65.5 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 78/195 (40%), Gaps = 29/195 (14%)

Query: 24  WPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKITS-- 77
           +P+ G DEVG G+  G + VVA+ +    +      G+ DSK ++ +K  ++   +    
Sbjct: 78  FPMIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKV 137

Query: 78  --SAIISISSASHQYIDKH----NIHKATLDAIYHAVENLQVIPRSALIDGRSIPED--- 128
              A++   S  ++ I +     ++  A  +     +    V P   +ID  + P++   
Sbjct: 138 QHQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQKGVQPERIVIDAFTSPKNYDK 197

Query: 129 --------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
                    P +     K +   L++A +SIIA   RD  +        + G+    G  
Sbjct: 198 YLTQEANRFPNKISLEEKAEGKYLAVAVSSIIA---RDLFLESLENLGRELGYQLPSGAG 254

Query: 181 TAKHQQV---IKEKG 192
           TA  +     ++  G
Sbjct: 255 TASDKVASKILQAYG 269


>gi|73916816|gb|AAZ93276.1| RNase HII [Streptococcus pneumoniae]
          Length = 291

 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 78/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAG--PVVVAAIILDPNNIP--FGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G   VV A +  D ++     G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVAAFVTSDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N     +     A+  L    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVTLHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   LS+A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|320528430|ref|ZP_08029592.1| ribonuclease HIII [Solobacterium moorei F0204]
 gi|320131344|gb|EFW23912.1| ribonuclease HIII [Solobacterium moorei F0204]
          Length = 289

 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 21/168 (12%)

Query: 22  NMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKR----EELYE 73
           N +P AG DEVG G   GPV V A  +  ++    +  G+ DSK++S          L E
Sbjct: 78  NHYPQAGSDEVGTGDYFGPVCVCASYVTKDDVDFLVKLGVRDSKQMSDADMLKIGPLLME 137

Query: 74  KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI---PRSALIDGR------- 123
           +I  S +I      +Q  + +N++         A  NL      P   +ID         
Sbjct: 138 RIPHSLLIVPPQKYNQVHEANNLNAIKAKLHNQAYINLAKKIELPSFKVIDQFTPETSYY 197

Query: 124 SIPEDLPCQAFAVI---KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
              ++ P     +    K +   LS+A  SI+++    +  +   +KY
Sbjct: 198 RYLKNEPQLIRGIHFETKAEDKYLSVAVGSIVSRYGFLKTWQEMEQKY 245


>gi|148983801|ref|ZP_01817120.1| ribonuclease HIII [Streptococcus pneumoniae SP3-BS71]
 gi|149003498|ref|ZP_01828372.1| ribonuclease HIII [Streptococcus pneumoniae SP14-BS69]
 gi|149008008|ref|ZP_01831565.1| ribonuclease HIII [Streptococcus pneumoniae SP18-BS74]
 gi|237650379|ref|ZP_04524631.1| ribonuclease HIII [Streptococcus pneumoniae CCRI 1974]
 gi|237822067|ref|ZP_04597912.1| ribonuclease HIII [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758434|gb|EDK65433.1| ribonuclease HIII [Streptococcus pneumoniae SP14-BS69]
 gi|147760520|gb|EDK67496.1| ribonuclease HIII [Streptococcus pneumoniae SP18-BS74]
 gi|147923948|gb|EDK75060.1| ribonuclease HIII [Streptococcus pneumoniae SP3-BS71]
 gi|301799504|emb|CBW32051.1| ribonuclease HIII [Streptococcus pneumoniae OXC141]
 gi|332076846|gb|EGI87308.1| ribonuclease HIII [Streptococcus pneumoniae GA17545]
 gi|332077687|gb|EGI88148.1| ribonuclease HIII [Streptococcus pneumoniae GA41301]
          Length = 293

 Score = 65.1 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + VVAA +    +      G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   LS+A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|73916704|gb|AAZ93220.1| RNase HII [Streptococcus pneumoniae]
 gi|73916740|gb|AAZ93238.1| RNase HII [Streptococcus pneumoniae]
 gi|73916750|gb|AAZ93243.1| RNase HII [Streptococcus pneumoniae]
 gi|73916782|gb|AAZ93259.1| RNase HII [Streptococcus pneumoniae]
 gi|73916786|gb|AAZ93261.1| RNase HII [Streptococcus pneumoniae]
 gi|73916808|gb|AAZ93272.1| RNase HII [Streptococcus pneumoniae]
          Length = 291

 Score = 65.1 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + VVAA +    +      G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   LS+A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|322387275|ref|ZP_08060885.1| ribonuclease HIII [Streptococcus infantis ATCC 700779]
 gi|321141804|gb|EFX37299.1| ribonuclease HIII [Streptococcus infantis ATCC 700779]
          Length = 293

 Score = 65.1 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 86/207 (41%), Gaps = 30/207 (14%)

Query: 12  FELEAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNIPF---GINDSKKISHKK 67
           +++E +V  +N  P+ G DEVG G+  G + VVA+ +    +      G+ DSK ++ +K
Sbjct: 67  YQVEQVVSGQNF-PLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKVGVGDSKTLTDQK 125

Query: 68  REELY----EKITSSAIISISSASHQYIDKH----NIHKATLDAIYHAVENLQVIPRSAL 119
             +L     EKI   A++   S  ++ I +     ++  A  +   + +   +V P   +
Sbjct: 126 IRQLASLLKEKIQHQALLLSPSKYNEVIGERYNAVSVKVALHNQAIYLLLQKEVEPEKIV 185

Query: 120 IDGRSIPED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--K 166
           ID  +  ++                    K +   L++A +SIIA   RD  +       
Sbjct: 186 IDAFTSSQNYQKYLKNEANHFSNPVTLEEKAEGKYLAVAVSSIIA---RDLFLENLENLG 242

Query: 167 KYPDYGFDSHVGYPT-AKHQQVIKEKG 192
           +   Y   S  G  +     Q+++  G
Sbjct: 243 RELGYQLPSGAGAASDKVASQILQAYG 269


>gi|168482640|ref|ZP_02707592.1| ribonuclease hiii [Streptococcus pneumoniae CDC1873-00]
 gi|172043660|gb|EDT51706.1| ribonuclease hiii [Streptococcus pneumoniae CDC1873-00]
 gi|332203574|gb|EGJ17641.1| ribonuclease HIII [Streptococcus pneumoniae GA47368]
          Length = 293

 Score = 65.1 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREE----LYEKIT 76
           P+ G DEVG G+  G + VVAA +    +      G+ DSK ++ +K  +    L EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   LS+A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDFFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|73916788|gb|AAZ93262.1| RNase HII [Streptococcus pneumoniae]
          Length = 291

 Score = 65.1 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREE----LYEKIT 76
           P+ G DEVG G+  G + VVAA +    +      G+ DSK ++ +K  +    L EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   LS+A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDFFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|301793646|emb|CBW36031.1| ribonuclease HIII [Streptococcus pneumoniae INV104]
          Length = 293

 Score = 65.1 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAG--PVVVAAIILDPNNIP--FGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G   VV A +  D ++     G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVAAFVTSDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   LS+A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|148993944|ref|ZP_01823314.1| ribonuclease HIII [Streptococcus pneumoniae SP9-BS68]
 gi|168488094|ref|ZP_02712293.1| ribonuclease hiii [Streptococcus pneumoniae SP195]
 gi|147927533|gb|EDK78560.1| ribonuclease HIII [Streptococcus pneumoniae SP9-BS68]
 gi|183572945|gb|EDT93473.1| ribonuclease hiii [Streptococcus pneumoniae SP195]
 gi|332075249|gb|EGI85719.1| ribonuclease HIII [Streptococcus pneumoniae GA17570]
          Length = 293

 Score = 65.1 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAG--PVVVAAIILDPNNIP--FGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G   VV A +  D ++     G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVAAFVTSDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   LS+A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|73916756|gb|AAZ93246.1| RNase HII [Streptococcus pneumoniae]
          Length = 291

 Score = 65.1 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAG--PVVVAAIILDPNNIP--FGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G   VV A +  D ++     G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVAAFVTSDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   LS+A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|209559934|ref|YP_002286406.1| ribonuclease HIII [Streptococcus pyogenes NZ131]
 gi|226741383|sp|B5XI49|RNH3_STRPZ RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|209541135|gb|ACI61711.1| Ribonuclease HIII [Streptococcus pyogenes NZ131]
          Length = 300

 Score = 64.7 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 31/200 (15%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80
           P+ G DEVG G+  G + VVA+ +   ++      G++DSKK+S K  +++   +     
Sbjct: 84  PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143

Query: 81  ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI----- 125
                 S +  ++           +I  A  +     +    + P+  +ID  +      
Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203

Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
                     P       K +S  L++A +SIIA   R+  +    +   D G+    G 
Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260

Query: 180 PTAKHQ---QVIKEKGPSCI 196
            +A  +   Q++   G S +
Sbjct: 261 GSASDKVASQLLAAYGMSSL 280


>gi|139473162|ref|YP_001127877.1| ribonuclease HIII [Streptococcus pyogenes str. Manfredo]
 gi|166226677|sp|A2RCQ5|RNH3_STRPG RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|134271408|emb|CAM29628.1| ribonuclease HIII [Streptococcus pyogenes str. Manfredo]
          Length = 300

 Score = 64.7 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 31/200 (15%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80
           P+ G DEVG G+  G + VVA+ +   ++      G++DSKK+S K  +++   +     
Sbjct: 84  PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143

Query: 81  ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI----- 125
                 S +  ++           +I  A  +     +    + P+  +ID  +      
Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203

Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
                     P       K +S  L++A +SIIA   R+  +    +   D G+    G 
Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260

Query: 180 PTAKHQ---QVIKEKGPSCI 196
            +A  +   Q++   G S +
Sbjct: 261 GSASDKVASQLLAAYGMSSL 280


>gi|94989199|ref|YP_597300.1| ribonuclease HIII [Streptococcus pyogenes MGAS9429]
 gi|94993086|ref|YP_601185.1| ribonuclease HIII [Streptococcus pyogenes MGAS2096]
 gi|166226673|sp|Q1JA20|RNH3_STRPB RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|166226674|sp|Q1JK67|RNH3_STRPC RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|94542707|gb|ABF32756.1| ribonuclease HIII [Streptococcus pyogenes MGAS9429]
 gi|94546594|gb|ABF36641.1| Ribonuclease HIII [Streptococcus pyogenes MGAS2096]
          Length = 300

 Score = 64.7 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 31/200 (15%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80
           P+ G DEVG G+  G + VVA+ +   ++      G++DSKK+S K  +++   +     
Sbjct: 84  PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143

Query: 81  ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI----- 125
                 S +  ++           +I  A  +     +    + P+  +ID  +      
Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203

Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
                     P       K +S  L++A +SIIA   R+  +    +   D G+    G 
Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260

Query: 180 PTAKHQ---QVIKEKGPSCI 196
            +A  +   Q++   G S +
Sbjct: 261 GSASDKVASQLLAAYGMSSL 280


>gi|15675667|ref|NP_269841.1| ribonuclease HIII [Streptococcus pyogenes M1 GAS]
 gi|19746773|ref|NP_607909.1| ribonuclease HIII [Streptococcus pyogenes MGAS8232]
 gi|50914922|ref|YP_060894.1| ribonuclease HIII [Streptococcus pyogenes MGAS10394]
 gi|71911377|ref|YP_282927.1| ribonuclease HIII [Streptococcus pyogenes MGAS5005]
 gi|54039253|sp|P66678|RNH3_STRP8 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|54042176|sp|P66677|RNH3_STRP1 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|73917858|sp|Q5XA52|RNH3_STRP6 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|13622880|gb|AAK34562.1| putative ribonuclease HIII [Streptococcus pyogenes M1 GAS]
 gi|19749005|gb|AAL98408.1| putative ribonuclease HIII [Streptococcus pyogenes MGAS8232]
 gi|50903996|gb|AAT87711.1| Ribonuclease HIII [Streptococcus pyogenes MGAS10394]
 gi|71854159|gb|AAZ52182.1| ribonuclease HIII [Streptococcus pyogenes MGAS5005]
          Length = 300

 Score = 64.7 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 31/200 (15%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80
           P+ G DEVG G+  G + VVA+ +   ++      G++DSKK+S K  +++   +     
Sbjct: 84  PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143

Query: 81  ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI----- 125
                 S +  ++           +I  A  +     +    + P+  +ID  +      
Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203

Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
                     P       K +S  L++A +SIIA   R+  +    +   D G+    G 
Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260

Query: 180 PTAKHQ---QVIKEKGPSCI 196
            +A  +   Q++   G S +
Sbjct: 261 GSASDKVASQLLAAYGMSSL 280


>gi|56808625|ref|ZP_00366352.1| COG1039: Ribonuclease HIII [Streptococcus pyogenes M49 591]
          Length = 300

 Score = 64.7 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 31/200 (15%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80
           P+ G DEVG G+  G + VVA+ +   ++      G++DSKK+S K  +++   +     
Sbjct: 84  PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143

Query: 81  ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI----- 125
                 S +  ++           +I  A  +     +    + P+  +ID  +      
Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203

Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
                     P       K +S  L++A +SIIA   R+  +    +   D G+    G 
Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260

Query: 180 PTAKHQ---QVIKEKGPSCI 196
            +A  +   Q++   G S +
Sbjct: 261 GSASDKVASQLLAAYGMSSL 280


>gi|306826719|ref|ZP_07460021.1| ribonuclease HIII [Streptococcus pyogenes ATCC 10782]
 gi|304431008|gb|EFM34015.1| ribonuclease HIII [Streptococcus pyogenes ATCC 10782]
          Length = 300

 Score = 64.7 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 31/200 (15%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80
           P+ G DEVG G+  G + VVA+ +   ++      G++DSKK+S K  +++   +     
Sbjct: 84  PIVGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143

Query: 81  ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI----- 125
                 S +  ++           +I  A  +     +    + P+  +ID  +      
Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203

Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
                     P       K +S  L++A +SIIA   R+  +    +   D G+    G 
Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260

Query: 180 PTAKHQ---QVIKEKGPSCI 196
            +A  +   Q++   G S +
Sbjct: 261 GSASDKVASQLLAAYGMSSL 280


>gi|73916714|gb|AAZ93225.1| RNase HII [Streptococcus pneumoniae]
 gi|73916734|gb|AAZ93235.1| RNase HII [Streptococcus pneumoniae]
          Length = 291

 Score = 64.7 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREE----LYEKIT 76
           P+ G DEVG G+  G + VVAA +    +      G+ DSK ++ +K  +    L EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   LS+A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|73916718|gb|AAZ93227.1| RNase HII [Streptococcus pneumoniae]
 gi|73916732|gb|AAZ93234.1| RNase HII [Streptococcus pneumoniae]
          Length = 291

 Score = 64.7 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + VVAA +    +      G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQEANRFSNPISLEKKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|15900322|ref|NP_344926.1| ribonuclease HIII [Streptococcus pneumoniae TIGR4]
 gi|111657623|ref|ZP_01408357.1| hypothetical protein SpneT_02001177 [Streptococcus pneumoniae
           TIGR4]
 gi|18314321|sp|O07874|RNH3_STRPN RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|14971871|gb|AAK74566.1| ribonuclease HIII [Streptococcus pneumoniae TIGR4]
          Length = 293

 Score = 64.7 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREE----LYEKIT 76
           P+ G DEVG G+  G + VVAA +    +      G+ DSK ++ +K  +    L EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   LS+A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|148996807|ref|ZP_01824525.1| ribonuclease HIII [Streptococcus pneumoniae SP11-BS70]
 gi|168576877|ref|ZP_02722727.1| ribonuclease hiii [Streptococcus pneumoniae MLV-016]
 gi|307067052|ref|YP_003876018.1| ribonuclease HIII [Streptococcus pneumoniae AP200]
 gi|147757382|gb|EDK64421.1| ribonuclease HIII [Streptococcus pneumoniae SP11-BS70]
 gi|183577460|gb|EDT97988.1| ribonuclease hiii [Streptococcus pneumoniae MLV-016]
 gi|306408589|gb|ADM84016.1| Ribonuclease HIII [Streptococcus pneumoniae AP200]
          Length = 293

 Score = 64.7 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + VVAA +    +      G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQEANRFSNPISLEKKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|329766419|ref|ZP_08257963.1| Ribonuclease HII [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137018|gb|EGG41310.1| Ribonuclease HII [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 62

 Score = 64.3 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 37/53 (69%), Gaps = 4/53 (7%)

Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK 74
          + G+D+ GRG++ GP+V+A I L  +++      G+ DSK+++ K REELY+K
Sbjct: 10 ICGVDDAGRGSMLGPLVIAGISLKKSDVSKLKLLGVKDSKQLTPKLREELYKK 62


>gi|196232748|ref|ZP_03131599.1| ribonuclease HIII [Chthoniobacter flavus Ellin428]
 gi|196223208|gb|EDY17727.1| ribonuclease HIII [Chthoniobacter flavus Ellin428]
          Length = 319

 Score = 64.3 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 25/182 (13%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHK 66
               E ++  +   P  G+DE G+G   GP+V+A    D       +  GI DSKKI   
Sbjct: 84  RLGYEDVLNPEMFAPHFGVDESGKGDFFGPLVIAGCYTDRGITRTLMEAGIQDSKKIGSD 143

Query: 67  KREE-LYEKITSS--AIISISSASHQYIDKH-----NIHKATLDAIYHAVEN-LQVIPR- 116
           KR   L   I  +  A+ S+ +   +  ++      N+++         +EN L++ P  
Sbjct: 144 KRIRDLAAIIKRTQGAVHSVVAIGPERYNQLYAKFGNLNRLLAWGHARVIENLLEIRPDC 203

Query: 117 -SALIDGRSIP---------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166
             AL D  + P         +    Q     K +S  +++AAASI+A+      +R   +
Sbjct: 204 PRALSDQFANPALIKRALLEKGRAIQLDQRTKAES-DVAVAAASILAREAFIDWLRNKGR 262

Query: 167 KY 168
           ++
Sbjct: 263 EF 264


>gi|94995019|ref|YP_603117.1| ribonuclease HIII [Streptococcus pyogenes MGAS10750]
 gi|166226676|sp|Q1J513|RNH3_STRPF RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|94548527|gb|ABF38573.1| Ribonuclease HIII [Streptococcus pyogenes MGAS10750]
          Length = 300

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 31/200 (15%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80
           P+ G DEVG G+  G + VVA+ +   ++      G++DSKK+S K  +++   +     
Sbjct: 84  PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143

Query: 81  ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI----- 125
                 S +  ++           +I  A  +     +    + P+  +ID  +      
Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203

Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
                     P       K +S  L++A +SIIA   R+  +    +   D G+    G 
Sbjct: 204 KHLKKEKSHFPNPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260

Query: 180 PTAKHQ---QVIKEKGPSCI 196
            +A  +   Q++   G S +
Sbjct: 261 GSASDKVASQLLAAYGMSSL 280


>gi|325689446|gb|EGD31451.1| ribonuclease HIII [Streptococcus sanguinis SK115]
 gi|325693764|gb|EGD35683.1| ribonuclease HIII [Streptococcus sanguinis SK150]
          Length = 296

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 76/199 (38%), Gaps = 30/199 (15%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKI 75
            +N   + G DEVG G+  G + V A  + P+        G+ DSK ++  K  +L   +
Sbjct: 78  SQNFALI-GTDEVGNGSYFGGLTVVASFVTPDQHDFLRKLGVGDSKTLNDSKIRQLAPVL 136

Query: 76  TS----SAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
                  A++      ++ I    +  ++  A  +   + +    + P   +ID  +  +
Sbjct: 137 KEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKGINPEKIVIDAFTSQQ 196

Query: 128 D-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
           +            P     + K +   L++A +SIIA   RD  +        + G+   
Sbjct: 197 NYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIA---RDLFLENLENLSQELGYTLP 253

Query: 177 VGYPTA-KHQ--QVIKEKG 192
            G  +   H   Q+++  G
Sbjct: 254 SGAGSKSDHVASQILQAYG 272


>gi|115289020|gb|ABI85515.1| RnhB [Haemophilus influenzae]
 gi|115289065|gb|ABI85546.1| RnhB [Haemophilus influenzae]
 gi|115289068|gb|ABI85548.1| RnhB [Haemophilus influenzae]
 gi|115289071|gb|ABI85550.1| RnhB [Haemophilus influenzae]
          Length = 40

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           F  H GYPT  H + + E G    HR +F P++ 
Sbjct: 2   FAKHKGYPTKLHLEKLAEFGTLPQHRRSFAPVKK 35


>gi|115289044|gb|ABI85532.1| RnhB [Haemophilus influenzae]
          Length = 40

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           F  H GYPT  H + + E G    HR +F P++ 
Sbjct: 2   FAKHKGYPTKLHLEKLAEFGALPQHRRSFAPVKK 35


>gi|194398393|ref|YP_002037085.1| ribonuclease HIII [Streptococcus pneumoniae G54]
 gi|226741382|sp|B5E7E5|RNH3_STRP4 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|194358060|gb|ACF56508.1| ribonuclease HIII [Streptococcus pneumoniae G54]
 gi|332204430|gb|EGJ18495.1| ribonuclease HIII [Streptococcus pneumoniae GA47901]
          Length = 293

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + VVAA +    +      G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|73916716|gb|AAZ93226.1| RNase HII [Streptococcus pneumoniae]
 gi|73916738|gb|AAZ93237.1| RNase HII [Streptococcus pneumoniae]
 gi|73916780|gb|AAZ93258.1| RNase HII [Streptococcus pneumoniae]
          Length = 291

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + VVAA +    +      G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|73916752|gb|AAZ93244.1| RNase HII [Streptococcus pneumoniae]
          Length = 291

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + VVAA +    +      G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|73916708|gb|AAZ93222.1| RNase HII [Streptococcus pneumoniae]
          Length = 291

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + VVAA +    +      G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|73916712|gb|AAZ93224.1| RNase HII [Streptococcus pneumoniae]
 gi|73916728|gb|AAZ93232.1| RNase HII [Streptococcus pneumoniae]
 gi|73916730|gb|AAZ93233.1| RNase HII [Streptococcus pneumoniae]
          Length = 291

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + VVAA +    +      G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|73916792|gb|AAZ93264.1| RNase HII [Streptococcus pneumoniae]
 gi|73916810|gb|AAZ93273.1| RNase HII [Streptococcus pneumoniae]
          Length = 291

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + VVAA +    +      G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|21911127|ref|NP_665395.1| ribonuclease HIII [Streptococcus pyogenes MGAS315]
 gi|28895188|ref|NP_801538.1| ribonuclease HIII [Streptococcus pyogenes SSI-1]
 gi|25091193|sp|Q8K5Y5|RNH3_STRP3 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|21905338|gb|AAM80198.1| putative ribonuclease HIII [Streptococcus pyogenes MGAS315]
 gi|28810433|dbj|BAC63371.1| putative ribonuclease HIII [Streptococcus pyogenes SSI-1]
          Length = 300

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 31/200 (15%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80
           P+ G DEVG G+  G + VVA+ +   ++      G++DSKK+S K  +++   +     
Sbjct: 84  PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143

Query: 81  ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI----- 125
                 S +  ++           +I  A  +     +    + P+  +ID  +      
Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203

Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
                     P       K +S  L++A +SIIA   R+  +    +   D G+    G 
Sbjct: 204 KHLKKEKNHFPDPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260

Query: 180 PTAKHQ---QVIKEKGPSCI 196
            +A  +   Q++   G S +
Sbjct: 261 GSASDKVASQLLAAYGMSSL 280


>gi|15902409|ref|NP_357959.1| ribonuclease HIII [Streptococcus pneumoniae R6]
 gi|116516121|ref|YP_815878.1| ribonuclease HIII [Streptococcus pneumoniae D39]
 gi|148988156|ref|ZP_01819619.1| ribonuclease HIII [Streptococcus pneumoniae SP6-BS73]
 gi|169834316|ref|YP_001693911.1| ribonuclease HIII [Streptococcus pneumoniae Hungary19A-6]
 gi|221231270|ref|YP_002510422.1| ribonuclease HIII [Streptococcus pneumoniae ATCC 700669]
 gi|30316193|sp|P59660|RNH3_STRR6 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|122279236|sp|Q04M70|RNH3_STRP2 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|238688318|sp|B1I9J8|RNH3_STRPI RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|254808015|sp|B8ZLH1|RNH3_STRPJ RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|2209339|gb|AAC45437.1| ribonuclease HII [Streptococcus pneumoniae]
 gi|15457925|gb|AAK99169.1| Ribonuclease HII [Streptococcus pneumoniae R6]
 gi|73916706|gb|AAZ93221.1| RNase HII [Streptococcus pneumoniae]
 gi|73916762|gb|AAZ93249.1| RNase HII [Streptococcus pneumoniae]
 gi|73916764|gb|AAZ93250.1| RNase HII [Streptococcus pneumoniae]
 gi|73916766|gb|AAZ93251.1| RNase HII [Streptococcus pneumoniae]
 gi|73916768|gb|AAZ93252.1| RNase HII [Streptococcus pneumoniae]
 gi|73916770|gb|AAZ93253.1| RNase HII [Streptococcus pneumoniae]
 gi|73916774|gb|AAZ93255.1| RNase HII [Streptococcus pneumoniae]
 gi|73916776|gb|AAZ93256.1| RNase HII [Streptococcus pneumoniae]
 gi|73916778|gb|AAZ93257.1| RNase HII [Streptococcus pneumoniae]
 gi|73916790|gb|AAZ93263.1| RNase HII [Streptococcus pneumoniae]
 gi|73916794|gb|AAZ93265.1| RNase HII [Streptococcus pneumoniae]
 gi|73916796|gb|AAZ93266.1| RNase HII [Streptococcus pneumoniae]
 gi|73916798|gb|AAZ93267.1| RNase HII [Streptococcus pneumoniae]
 gi|73916802|gb|AAZ93269.1| RNase HII [Streptococcus pneumoniae]
 gi|73916804|gb|AAZ93270.1| RNase HII [Streptococcus pneumoniae]
 gi|73916806|gb|AAZ93271.1| RNase HII [Streptococcus pneumoniae]
 gi|73916814|gb|AAZ93275.1| RNase HII [Streptococcus pneumoniae]
 gi|116076697|gb|ABJ54417.1| ribonuclease HIII [Streptococcus pneumoniae D39]
 gi|147926620|gb|EDK77693.1| ribonuclease HIII [Streptococcus pneumoniae SP6-BS73]
 gi|168996818|gb|ACA37430.1| ribonuclease hiii [Streptococcus pneumoniae Hungary19A-6]
 gi|220673730|emb|CAR68229.1| ribonuclease HIII [Streptococcus pneumoniae ATCC 700669]
          Length = 290

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + VVAA +    +      G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|115289026|gb|ABI85519.1| RnhB [Haemophilus influenzae]
          Length = 40

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           F  H GYPT  H + + E G    HR +F P++ 
Sbjct: 2   FAQHKGYPTKLHLEKLAEFGALPQHRRSFAPVKK 35


>gi|149023691|ref|ZP_01836171.1| ribonuclease HIII [Streptococcus pneumoniae SP23-BS72]
 gi|147929628|gb|EDK80620.1| ribonuclease HIII [Streptococcus pneumoniae SP23-BS72]
          Length = 293

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + VVAA +    +      G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|225853979|ref|YP_002735491.1| ribonuclease HIII [Streptococcus pneumoniae JJA]
 gi|254808017|sp|C1CCH0|RNH3_STRZJ RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|225722438|gb|ACO18291.1| ribonuclease hiii [Streptococcus pneumoniae JJA]
          Length = 293

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + VVAA +    +      G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|329942650|ref|ZP_08291429.1| ribonuclease HIII [Chlamydophila psittaci Cal10]
 gi|332287245|ref|YP_004422146.1| ribonuclease HIII [Chlamydophila psittaci 6BC]
 gi|313847833|emb|CBY16826.1| ribonuclease hIII [Chlamydophila psittaci RD1]
 gi|325506576|gb|ADZ18214.1| ribonuclease HIII [Chlamydophila psittaci 6BC]
 gi|328814910|gb|EGF84899.1| ribonuclease HIII [Chlamydophila psittaci Cal10]
 gi|328914491|gb|AEB55324.1| ribonuclease HIII [Chlamydophila psittaci 6BC]
          Length = 300

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 66/173 (38%), Gaps = 26/173 (15%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKKREELYEK 74
           EK++ P  G+DE G+G   GP+ +A +         N     I DSK ++  +   L + 
Sbjct: 82  EKDLRPRLGVDESGKGDFFGPLCIAGVYARDAETLKNLYKTKIQDSKMLNDNQILSLAKT 141

Query: 75  ITSSAIISISSASHQYIDK-----HNIHKATLDAIYHAVENLQVIP-------------- 115
           I + +   +     +  ++     HN++     A    ++ L   P              
Sbjct: 142 IRACSTYDVMILYPEKYNELYAKFHNLNILLAWAHATIIDQLAPRPSGEVFAISDQFASS 201

Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
            S L++     +         ++ +   + +AAASI+A+      +    +++
Sbjct: 202 ESVLLEALR-KKSTDISVIQRVRAEQ-DIVVAAASILAREAFINTITKLEQRF 252


>gi|168490684|ref|ZP_02714827.1| ribonuclease hiii [Streptococcus pneumoniae CDC0288-04]
 gi|73916720|gb|AAZ93228.1| RNase HII [Streptococcus pneumoniae]
 gi|183574806|gb|EDT95334.1| ribonuclease hiii [Streptococcus pneumoniae CDC0288-04]
 gi|332202313|gb|EGJ16382.1| ribonuclease HIII [Streptococcus pneumoniae GA41317]
          Length = 290

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAG--PVVVAAIILDPNNIP--FGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G   VV A +  D ++     G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVAAFVTSDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|323353469|ref|ZP_08088002.1| ribonuclease HIII [Streptococcus sanguinis VMC66]
 gi|322121415|gb|EFX93178.1| ribonuclease HIII [Streptococcus sanguinis VMC66]
 gi|324990323|gb|EGC22261.1| ribonuclease HIII [Streptococcus sanguinis SK353]
 gi|325688397|gb|EGD30415.1| ribonuclease HIII [Streptococcus sanguinis SK72]
          Length = 296

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 77/199 (38%), Gaps = 30/199 (15%)

Query: 20  EKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKI 75
            +N   + G DEVG G+  G + VVA+ +    +      G+ DSK ++  K  +L   +
Sbjct: 78  SQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDSKIRQLAPVL 136

Query: 76  TS----SAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
                  A++      ++ I    +  ++  A  +   + +    + P   +ID  +  +
Sbjct: 137 KEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKGINPEKIVIDAFTSQQ 196

Query: 128 D-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
           +            P     + K +   L++A +SIIA   RD  +        + G+   
Sbjct: 197 NYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIA---RDLFLENLENLSQELGYTLP 253

Query: 177 VGYPTA-KHQ--QVIKEKG 192
            G  +   H   Q+++  G
Sbjct: 254 SGAGSKSDHVASQILQAHG 272


>gi|89898516|ref|YP_515626.1| ribonuclease HIII [Chlamydophila felis Fe/C-56]
 gi|123483040|sp|Q253Q7|RNH3_CHLFF RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|89331888|dbj|BAE81481.1| ribonuclease HII [Chlamydophila felis Fe/C-56]
          Length = 300

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 65/173 (37%), Gaps = 26/173 (15%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHKKREELYEK 74
           E ++ P  G+DE G+G   GP+ +A +               I DSK ++  +   L + 
Sbjct: 82  EADLRPRLGVDESGKGDFFGPLCIAGVYARDEETLKSLYKTKIQDSKLLNDAQILSLAKT 141

Query: 75  ITSSAIISISSASHQYIDK-----HNIHKATLDAIYHAVENLQVIP-------------- 115
           I SS    +     +  ++     HN++     A    ++ L   P              
Sbjct: 142 IRSSCTYDVMILYPEKYNELYGKFHNLNILLAWAHATIIDKLAPRPSGEVFAISDQFASS 201

Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
            S L++     ++        ++ +   + +AAASI+A+      M    +++
Sbjct: 202 ESVLLNALK-KKNTDISVIQKVRAEQ-DIVVAAASILAREAFITTMTNLEQRF 252


>gi|291320114|ref|YP_003515372.1| ribonuclease HII [Mycoplasma agalactiae]
 gi|290752443|emb|CBH40414.1| Ribonuclease HII (RNase HII) [Mycoplasma agalactiae]
          Length = 238

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 57/196 (29%), Positives = 86/196 (43%), Gaps = 39/196 (19%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHK 66
            F++++ + E     + GIDEVG G   GP+   A+ +D  N+      GI DSKKIS K
Sbjct: 5   DFDVDSNLLEN--KSIIGIDEVGVGDYFGPLCACAVFIDAKNVSKVAQLGIKDSKKISDK 62

Query: 67  KREELYEKITSSAIISISSAS------HQYIDKHNIHKATLDAIYHAVENLQV-----IP 115
           K +EL  K+ SS +IS S A       ++    +N H   +     A+ +L         
Sbjct: 63  KIKELAAKLKSSKLISYSLAHLNPSGYNKLNKNYNAHILKMFVHLKAINSLSAKLENDKH 122

Query: 116 RSALIDGRSIPEDL-----------PCQAFAVIKGD--------SISLSIAAASIIAKVT 156
              LID  +  E++               F  I  D        S S+S+AAASI+A   
Sbjct: 123 DYILIDKYASAENMLKYYNELVISNNWANFKEINEDVLIANNAESYSISVAAASILA--- 179

Query: 157 RDRLMRIAHKKYPDYG 172
           RD+ + +  K   +Y 
Sbjct: 180 RDQFLTLIAKMNEEYN 195


>gi|115289047|gb|ABI85534.1| RnhB [Haemophilus influenzae]
 gi|115289050|gb|ABI85536.1| RnhB [Haemophilus influenzae]
 gi|115289053|gb|ABI85538.1| RnhB [Haemophilus influenzae]
          Length = 40

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           F  H GYPT  H + + E G    HR +F P++ 
Sbjct: 2   FAKHKGYPTKLHLEKLAELGALPQHRRSFAPVKK 35


>gi|327468592|gb|EGF14071.1| ribonuclease HIII [Streptococcus sanguinis SK330]
          Length = 296

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 77/199 (38%), Gaps = 30/199 (15%)

Query: 20  EKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKI 75
            +N   + G DEVG G+  G + VVA+ +    +      G+ DSK ++  K  +L   +
Sbjct: 78  SQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDSKIRQLAPVL 136

Query: 76  TS----SAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
                  A++      ++ I    +  ++  A  +   + +    + P   +ID  +  +
Sbjct: 137 KEKIAHQALLLSPEKYNEVIASVYNAVSVKVALHNQAIYLLLQKGINPEKIVIDAFTSQQ 196

Query: 128 D-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
           +            P     + K +   L++A +SIIA   RD  +        + G+   
Sbjct: 197 NYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIA---RDLFLENLENLSQELGYTLP 253

Query: 177 VGYPTA-KHQ--QVIKEKG 192
            G  +   H   Q+++  G
Sbjct: 254 SGAGSKSDHVASQILQAYG 272


>gi|324992151|gb|EGC24073.1| ribonuclease HIII [Streptococcus sanguinis SK405]
 gi|327459468|gb|EGF05814.1| ribonuclease HIII [Streptococcus sanguinis SK1]
          Length = 296

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 77/199 (38%), Gaps = 30/199 (15%)

Query: 20  EKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKI 75
            +N   + G DEVG G+  G + VVA+ +    +      G+ DSK ++  K  +L   +
Sbjct: 78  SQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDSKIRQLAPVL 136

Query: 76  TS----SAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
                  A++      ++ I    +  ++  A  +   + +    + P   +ID  +  +
Sbjct: 137 KEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKGINPEKIVIDAFTSQQ 196

Query: 128 D-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
           +            P     + K +   L++A +SIIA   RD  +        + G+   
Sbjct: 197 NYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIA---RDLFLENLENLSQELGYTLP 253

Query: 177 VGYPTA-KHQ--QVIKEKG 192
            G  +   H   Q+++  G
Sbjct: 254 SGAGSKSDHVASQILQAYG 272


>gi|115289023|gb|ABI85517.1| RnhB [Haemophilus influenzae]
 gi|115289029|gb|ABI85521.1| RnhB [Haemophilus influenzae]
 gi|115289033|gb|ABI85524.1| RnhB [Haemophilus influenzae]
 gi|115289037|gb|ABI85527.1| RnhB [Haemophilus influenzae]
 gi|115289041|gb|ABI85530.1| RnhB [Haemophilus influenzae]
 gi|115289056|gb|ABI85540.1| RnhB [Haemophilus influenzae]
 gi|115289059|gb|ABI85542.1| RnhB [Haemophilus influenzae]
 gi|115289062|gb|ABI85544.1| RnhB [Haemophilus influenzae]
 gi|115289074|gb|ABI85552.1| RnhB [Haemophilus influenzae]
 gi|115289077|gb|ABI85554.1| RnhB [Haemophilus influenzae]
 gi|115289080|gb|ABI85556.1| RnhB [Haemophilus influenzae]
 gi|115289084|gb|ABI85559.1| RnhB [Haemophilus influenzae]
 gi|115289086|gb|ABI85560.1| RnhB [Haemophilus influenzae]
          Length = 40

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           F  H GYPT  H + + E G    HR +F P++ 
Sbjct: 2   FAQHKGYPTKLHLEKLAELGALPQHRRSFAPVKK 35


>gi|219850709|ref|YP_002465141.1| ribonuclease HIII [Methanosphaerula palustris E1-9c]
 gi|219544968|gb|ACL15418.1| ribonuclease HIII [Methanosphaerula palustris E1-9c]
          Length = 318

 Score = 63.5 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 73/195 (37%), Gaps = 30/195 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAI 80
            + G DE G+G   GP+VVAA+ LD          G+ DSK +S ++   L   +   A+
Sbjct: 105 LLIGSDESGKGDYFGPLVVAAVCLDQQGAARLRAAGVTDSKALSDQENLSLASVVRKVAV 164

Query: 81  -ISISSASHQYIDKHNIHKA-------TLDAIYHAVENLQVIPR----SALID---GRSI 125
            IS+     +  +      A        L A  HA    +V       + L+D   G  +
Sbjct: 165 SISVKVLLPEEYNARYAATARAGGTLNDLLASVHAEAIQRVAAESGCTTVLVDQFAGERV 224

Query: 126 PEDL---PCQAFAVIKGDSISLS--IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
            +DL         V++         +AAAS++A   R R +         Y      G  
Sbjct: 225 LDDLLAVRYPGLRVVQRPRAEQETPVAAASVLA---RARFLEDLDLLGMPYNVHLLKGAS 281

Query: 181 ---TAKHQQVIKEKG 192
              T +  Q++   G
Sbjct: 282 AGVTKQAAQMVDRYG 296


>gi|332686770|ref|YP_004456544.1| ribonuclease HIII [Melissococcus plutonius ATCC 35311]
 gi|332370779|dbj|BAK21735.1| ribonuclease HIII [Melissococcus plutonius ATCC 35311]
          Length = 309

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 30/148 (20%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII 81
           V G DEVG G+  GP+ V A  +  +NI      G+ DSK ++  +  +L E +      
Sbjct: 93  VLGSDEVGNGSYFGPLTVCAAYVAKDNIKMLKAAGVKDSKNLTDNRIMQLAEMLKEKIPF 152

Query: 82  SISSASHQYIDKHNIHKATLDAIYHAVE------------NLQVIPRSALIDGRSIPEDL 129
            +   + +   K+N  + T +A++  V                + P + LID  + P++ 
Sbjct: 153 KLLIVTPE---KYNQIQTTYNAVHMKVALHNQAIALLLAKLAPIKPEAILIDQFTSPKNY 209

Query: 130 -----------PCQAFAVIKGDSISLSI 146
                          +   KG+S  +S+
Sbjct: 210 YNYVQSEQRQVKAPIYFTTKGESYHVSV 237


>gi|166154229|ref|YP_001654347.1| ribonuclease HIII [Chlamydia trachomatis 434/Bu]
 gi|166155104|ref|YP_001653359.1| ribonuclease HIII [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|255348370|ref|ZP_05380377.1| ribonuclease HIII [Chlamydia trachomatis 70]
 gi|255502911|ref|ZP_05381301.1| ribonuclease HIII [Chlamydia trachomatis 70s]
 gi|255506580|ref|ZP_05382219.1| ribonuclease HIII [Chlamydia trachomatis D(s)2923]
 gi|301335477|ref|ZP_07223721.1| ribonuclease HIII [Chlamydia trachomatis L2tet1]
 gi|226741381|sp|B0BAZ4|RNH3_CHLTB RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|238687433|sp|B0B9B5|RNH3_CHLT2 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|165930217|emb|CAP03702.1| ribonuclease HIII [Chlamydia trachomatis 434/Bu]
 gi|165931092|emb|CAP06656.1| ribonuclease HIII [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|296438311|gb|ADH20464.1| ribonuclease HIII [Chlamydia trachomatis E/11023]
          Length = 300

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 75/216 (34%), Gaps = 34/216 (15%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-----NDSKKISHKKREELYEK 74
           ++++    G+DE G+G   GP+  A +          +      DSK I   K   L + 
Sbjct: 82  QQDLRSRIGVDESGKGDFFGPLCTAGVYASSPQAIEALYKTSICDSKLIPDAKILSLAQN 141

Query: 75  ITSSAIISISSASHQYIDKHNIHK---ATLDAIYHA--VENLQVIPR---SALIDGRSIP 126
           I S     + +   +  +    +     +L A  HA  ++NL   P     A+ D  +  
Sbjct: 142 IRSLCACKVITLFPEKYNALYANFQNLNSLLAWTHATIIDNLAPHPAGAVFAISDQFASS 201

Query: 127 EDLPCQAFAVIKGD---------SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
           E +  QA    + D            + +AAASI+A   R+  +   H     Y      
Sbjct: 202 ERVLLQAVRKKRSDIELIQRHRAEQDVVVAAASILA---REAFLSSIHALESQYQIRLLK 258

Query: 178 GYPTAKHQQV---IKEKG------PSCIHRLTFRPL 204
           G      Q+    +  KG          H  TF  +
Sbjct: 259 GASGKVKQRAKEILHNKGQVVLEKVCKTHFKTFNEV 294


>gi|218961973|ref|YP_001741748.1| putative Ribonuclease H [Candidatus Cloacamonas acidaminovorans]
 gi|167730630|emb|CAO81542.1| putative Ribonuclease H [Candidatus Cloacamonas acidaminovorans]
          Length = 327

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 28/169 (16%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKI---TSSA 79
            G DE G+G   GP+VV A     +        G+ DSKK++ ++ + + + +    ++ 
Sbjct: 113 IGSDECGKGDYFGPLVVCAFAYKRDSENEFKNVGVKDSKKLNSEEIKRIAQYLYKNYANC 172

Query: 80  IISISSASHQYIDKHNIHKA------TLDAIYH-----AVENLQVIPRSALIDGRSI--- 125
           I  I     +Y +     KA       L A  H     A++      +  L+D  S+   
Sbjct: 173 IHCIVIKPVKYNELIAKFKAQKKNLNDLLAWLHSTAIIALQKNHPESQGVLVDQFSVSHK 232

Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
                  +  P        G  I  ++AAASIIA+           K Y
Sbjct: 233 TKYALQEKQFPLPCIERT-GAEIDPAVAAASIIARYQFLEAFEAMRKFY 280


>gi|227514539|ref|ZP_03944588.1| ribonuclease H [Lactobacillus fermentum ATCC 14931]
 gi|260663396|ref|ZP_05864287.1| ribonuclease HIII [Lactobacillus fermentum 28-3-CHN]
 gi|227087096|gb|EEI22408.1| ribonuclease H [Lactobacillus fermentum ATCC 14931]
 gi|260552248|gb|EEX25300.1| ribonuclease HIII [Lactobacillus fermentum 28-3-CHN]
          Length = 301

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 12/110 (10%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
           W V G DEVG G+  GP+  AA+ +  + +      G+ DSKK++  +   L ++I ++ 
Sbjct: 88  WSVLGSDEVGVGSYFGPLTTAAVFVAADQVASLTQLGVADSKKLTDPEIIRLAKQIMATC 147

Query: 80  IISI----SSASHQYIDKHNIHKATLDAI----YHAVENLQVIPRSALID 121
            ++      +A +  + K+N  +             +E L   P++ LID
Sbjct: 148 PVTYLNLMPAAYNARMKKYNQAQLKALCHNYVLAKTLERLATKPQAILID 197


>gi|309799726|ref|ZP_07693942.1| ribonuclease hiii [Streptococcus infantis SK1302]
 gi|308116642|gb|EFO54102.1| ribonuclease hiii [Streptococcus infantis SK1302]
          Length = 293

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 78/195 (40%), Gaps = 29/195 (14%)

Query: 24  WPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKI 75
           +P+ G DEVG G+  G + VVA+ +    +      G+ DSK ++ +K  +L     E+I
Sbjct: 78  FPLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQLAPLLKERI 137

Query: 76  TSSAIISISSASHQYIDKH----NIHKATLDAIYHAVENLQVIPRSALIDGRSIPED--- 128
              A++   S  ++ I +     ++  A  +     +   +V P   +ID  +  ++   
Sbjct: 138 QHQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQKRVQPEKIVIDAFTSTQNYEK 197

Query: 129 --------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
                            K +   L++A +SIIA   RD  +        + G+    G  
Sbjct: 198 YLKNEANHFSNPVSLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAG 254

Query: 181 TAKHQQV---IKEKG 192
           TA  +     ++  G
Sbjct: 255 TASDKVASQILRAYG 269


>gi|299783000|gb|ADJ40998.1| Ribonuclease HIII (RNase HIII) [Lactobacillus fermentum CECT 5716]
          Length = 301

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 12/110 (10%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
           W V G DEVG G+  GP+  AA+ +  + +      G+ DSKK++  +   L ++I ++ 
Sbjct: 88  WSVLGSDEVGVGSYFGPLTTAAVFVAADQVASLTQLGVADSKKLTDPEIIRLAKQIMATC 147

Query: 80  IISI----SSASHQYIDKHNIHKATLDAI----YHAVENLQVIPRSALID 121
            ++      +A +  + K+N  +             +E L   P++ LID
Sbjct: 148 PVTYLNLMPAAYNARMKKYNQAQLKALCHNYVLAKTLERLATKPQAILID 197


>gi|184155001|ref|YP_001843341.1| ribonuclease HIII [Lactobacillus fermentum IFO 3956]
 gi|238692957|sp|B2GB29|RNH3_LACF3 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|183226345|dbj|BAG26861.1| ribonuclease HIII [Lactobacillus fermentum IFO 3956]
          Length = 301

 Score = 63.2 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 12/110 (10%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
           W V G DEVG G+  GP+  AA+ +  + +      G+ DSKK++  +   L ++I ++ 
Sbjct: 88  WSVLGSDEVGVGSYFGPLTTAAVFVAADQVASLTQLGVADSKKLTDPEIIRLAKQIMATC 147

Query: 80  IISI----SSASHQYIDKHNIHKATLDAI----YHAVENLQVIPRSALID 121
            ++      +A +  + K+N  +             +E L   P++ LID
Sbjct: 148 PVTYLNLMPAAYNARMKKYNQAQLKALCHNYVLAKTLERLATKPQAILID 197


>gi|168494560|ref|ZP_02718703.1| ribonuclease hiii [Streptococcus pneumoniae CDC3059-06]
 gi|307126617|ref|YP_003878648.1| ribonuclease hiii [Streptococcus pneumoniae 670-6B]
 gi|183575525|gb|EDT96053.1| ribonuclease hiii [Streptococcus pneumoniae CDC3059-06]
 gi|306483679|gb|ADM90548.1| ribonuclease hiii [Streptococcus pneumoniae 670-6B]
          Length = 293

 Score = 63.2 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + VVAA +    +      G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +S+I   TRD  +        + G+    G  T
Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSVI---TRDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|171779238|ref|ZP_02920209.1| hypothetical protein STRINF_01086 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282294|gb|EDT47721.1| hypothetical protein STRINF_01086 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 299

 Score = 63.2 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 26/180 (14%)

Query: 24  WPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELY----EKI 75
            P+ G DEVG G+  G + VVA+ +   ++      G++DSK ++  K  ++     EKI
Sbjct: 82  MPLIGSDEVGNGSYFGGLAVVASFVTPDDHALLKKLGVDDSKNLTDSKIRQIAPILEEKI 141

Query: 76  TSSAIISISSASHQYIDKHNIHK------ATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
              A++      +Q + K  +H       A  +   + +    V P   +ID  +  ++ 
Sbjct: 142 KHKALLLSPQKYNQVVGKGKMHNAVSVKVALHNQAIYLLLQDGVKPEKIVIDAFTSRQNY 201

Query: 130 PCQAFAVI-----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
                  +           K +   L++A +SIIA+      +    ++   Y   S  G
Sbjct: 202 EKYLKNEVNHFDNPLTLEEKAEGKYLAVAVSSIIARNLFLENLDKLSQEV-QYKLPSGAG 260


>gi|320547504|ref|ZP_08041790.1| ribonuclease HIII [Streptococcus equinus ATCC 9812]
 gi|320447849|gb|EFW88606.1| ribonuclease HIII [Streptococcus equinus ATCC 9812]
          Length = 299

 Score = 63.2 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 71/189 (37%), Gaps = 26/189 (13%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREE 70
           E   +     P+ G DEVG G+  G + VVA+ +   ++      G++DSK ++  K  +
Sbjct: 74  EKSSQAGQNMPLIGSDEVGNGSYFGGLAVVASFVTPDDHALLKKLGVDDSKNLTDSKIRQ 133

Query: 71  LYEK----ITSSAIISISSASHQYIDKHNIHK------ATLDAIYHAVENLQVIPRSALI 120
           +       I   A++      +Q + K  +H       A  +     +    V P   +I
Sbjct: 134 IAPILEKNIKHKALLLSPKKYNQVVGKGKMHNAVSVKVALHNQAIFLLLQDGVKPEKIVI 193

Query: 121 DGRSIPEDLPCQAFAVI-----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
           D  +  ++        +           K +   L++A +SIIA+      +    ++  
Sbjct: 194 DAFTSRQNYEKYLKNEVNHFNNPLTLEEKAEGKYLAVAVSSIIARNLFLENLDKLSQEV- 252

Query: 170 DYGFDSHVG 178
            Y   S  G
Sbjct: 253 QYKLPSGAG 261


>gi|322391517|ref|ZP_08064986.1| ribonuclease HIII [Streptococcus peroris ATCC 700780]
 gi|321145600|gb|EFX40992.1| ribonuclease HIII [Streptococcus peroris ATCC 700780]
          Length = 293

 Score = 63.2 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + VVA+ +    +      G+ DSK ++ +K  +L     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVASFVTPDQHHFLQKLGVGDSKSLTDQKIRQLAPLLKEKIQ 138

Query: 77  SSAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I    +  ++  A  +     +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGEGYNAVSVKVALHNQAIFLLLQKGVEPEKIVIDAFTSSKNYDRY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHVGY 179
                           K +   L++A +SIIA   RD  +       +   Y   S  G 
Sbjct: 199 LKNEANHFLNPVTLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAGA 255

Query: 180 PT-AKHQQVIKEKG 192
            +     Q+++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|262281891|ref|ZP_06059660.1| ribonuclease HIII [Streptococcus sp. 2_1_36FAA]
 gi|262262345|gb|EEY81042.1| ribonuclease HIII [Streptococcus sp. 2_1_36FAA]
          Length = 296

 Score = 63.2 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 79/196 (40%), Gaps = 29/196 (14%)

Query: 23  MWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EK 74
              + G DEVG G+  G + VVA+ +           G+ DSK ++ +K  +L     EK
Sbjct: 80  YQAMIGTDEVGNGSYFGGLAVVASFVTKEQEDFLRKLGVGDSKTLTDQKIRQLAPILKEK 139

Query: 75  ITSSAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRS------ 124
           IT  A++      +Q I    +  ++  A  +   + +    + P   +ID  +      
Sbjct: 140 ITHQALLLSPKKYNQVIASGYNAVSVKVALHNQAIYLLLEKGIKPDQIVIDAFTSSTNYQ 199

Query: 125 --IPEDLPCQAFAVI---KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
             + ++    + A+    K +   L++A +SIIA   RD  +        + G+    G 
Sbjct: 200 RYVKQERNQVSQAIHLEEKAEGKYLAVAVSSIIA---RDLFLENLEILSQELGYQLPSGA 256

Query: 180 PTA-KHQ--QVIKEKG 192
                H   Q++K  G
Sbjct: 257 GAKSDHVASQILKAYG 272


>gi|223932747|ref|ZP_03624745.1| ribonuclease HIII [Streptococcus suis 89/1591]
 gi|223898580|gb|EEF64943.1| ribonuclease HIII [Streptococcus suis 89/1591]
          Length = 296

 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 76/194 (39%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITS--- 77
           P+ G DEVG G+  G + VVA+ +   ++      G++DSKK++ +K  ++   +     
Sbjct: 83  PMIGTDEVGNGSYFGGLAVVASFVRPEDHAFLKSLGVDDSKKMTDQKICQIAPLLKEKIP 142

Query: 78  -SAIISISSASHQYIDK----HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++      ++ I++     ++  A  +     +    V P   +ID  +  ++    
Sbjct: 143 HQALLLSPKKYNEVIEQGYNAVSVKVALHNQAIFLLLQKGVQPEKIVIDAFTSSQNYQKY 202

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +SIIA+      +    +     G +   G  +
Sbjct: 203 LKKEANQFANPVTLEEKAEGKYLAVAVSSIIARAMFLENLVQLGQL---VGMNLPSGAGS 259

Query: 182 AKHQQV---IKEKG 192
              Q     +K+ G
Sbjct: 260 KSDQVAASILKQYG 273


>gi|225860427|ref|YP_002741936.1| ribonuclease HIII [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229684|ref|ZP_06963365.1| ribonuclease HIII [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254632|ref|ZP_06978218.1| ribonuclease HIII [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298502197|ref|YP_003724137.1| ribonuclease H [Streptococcus pneumoniae TCH8431/19A]
 gi|254808019|sp|C1CPR4|RNH3_STRZT RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|225727225|gb|ACO23076.1| ribonuclease hiii [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237792|gb|ADI68923.1| ribonuclease H [Streptococcus pneumoniae TCH8431/19A]
 gi|327390813|gb|EGE89153.1| ribonuclease HIII [Streptococcus pneumoniae GA04375]
          Length = 293

 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 77/194 (39%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + VVAA +    +      G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I    +  ++  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGNRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|73916754|gb|AAZ93245.1| RNase HII [Streptococcus pneumoniae]
 gi|73916758|gb|AAZ93247.1| RNase HII [Streptococcus pneumoniae]
 gi|73916760|gb|AAZ93248.1| RNase HII [Streptococcus pneumoniae]
          Length = 291

 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 77/194 (39%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + VVAA +    +      G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I    +  ++  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGNRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|328945874|gb|EGG40025.1| ribonuclease HIII [Streptococcus sanguinis SK1087]
          Length = 296

 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 75/199 (37%), Gaps = 30/199 (15%)

Query: 20  EKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKI 75
            +N   + G DEVG G+  G + VVA+ +    +      G+ DSK ++  K  +L   +
Sbjct: 78  SQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDSKIRQLAPVL 136

Query: 76  TS----SAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
                  A++      ++ I    +  ++  A  +   + +    + P   +ID  +  +
Sbjct: 137 KEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKGINPEKIVIDAFTSQQ 196

Query: 128 D-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
           +            P     + K +   L++A +SIIA   RD  +        + G+   
Sbjct: 197 NYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIA---RDLFLENLENLSQELGYTLP 253

Query: 177 VGYPTAKHQQV---IKEKG 192
            G  +   Q     ++  G
Sbjct: 254 SGAGSKSDQVASQILQTYG 272


>gi|327472875|gb|EGF18302.1| ribonuclease HIII [Streptococcus sanguinis SK408]
          Length = 296

 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 75/199 (37%), Gaps = 30/199 (15%)

Query: 20  EKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKI 75
            +N   + G DEVG G+  G + VVA+ +    +      G+ DSK ++  K  +L   +
Sbjct: 78  SQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDSKIRQLAPVL 136

Query: 76  TS----SAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
                  A++      ++ I    +  ++  A  +   + +    + P   +ID  +  +
Sbjct: 137 KEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKGINPEKIVIDAFTSQQ 196

Query: 128 D-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
           +            P     + K +   L++A +SIIA   RD  +        + G+   
Sbjct: 197 NYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIA---RDLFLENLENLSQELGYTLP 253

Query: 177 VGYPTAKHQQV---IKEKG 192
            G  +   Q     ++  G
Sbjct: 254 SGAGSKSDQVASQILQTYG 272


>gi|313678720|ref|YP_004056460.1| ribonuclease HIII [Mycoplasma bovis PG45]
 gi|312950718|gb|ADR25313.1| ribonuclease HIII [Mycoplasma bovis PG45]
          Length = 238

 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 39/196 (19%)

Query: 11  HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHK 66
             ++E+ + E     + G+DEVG G   GP+   A+ +D  N+      GI DSKK+S K
Sbjct: 5   DLDVESSLLEN--KSIIGVDEVGVGDYFGPLCACAVFIDAQNVNKVAELGIKDSKKLSDK 62

Query: 67  KREELYEKITSSAII--SISSASHQYIDKHN-IHKATLD---AIYHAVENL-----QVIP 115
           K +EL  K+ +S +I  S++  +    +K N  + A +        A+ ++      +  
Sbjct: 63  KIKELALKLKNSGLIYYSLAHLNPSGYNKLNKSYNANILKMFVHLKAINSVVFKLKNIKY 122

Query: 116 RSALIDGR-SIPEDLPCQAFAVI------------------KGDSISLSIAAASIIAKVT 156
               ID   S+   L      VI                  K +S S+S+AAASI+A   
Sbjct: 123 DYIFIDKYASVDNMLKYYNELVINNNWANFQEINEDILIANKAESYSVSVAAASILA--- 179

Query: 157 RDRLMRIAHKKYPDYG 172
           RD+ + +  K   +Y 
Sbjct: 180 RDQFLTLVSKMNDEYN 195


>gi|225856132|ref|YP_002737643.1| ribonuclease HIII [Streptococcus pneumoniae P1031]
 gi|254808018|sp|C1CIQ5|RNH3_STRZP RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|225725696|gb|ACO21548.1| ribonuclease hiii [Streptococcus pneumoniae P1031]
          Length = 290

 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 80/194 (41%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + VVAA +    +      G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 CQAFA---------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
               A           K +   L++A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQEANRFSNSISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|253751116|ref|YP_003024257.1| ribonuclease HIII [Streptococcus suis SC84]
 gi|253753017|ref|YP_003026157.1| ribonuclease HIII [Streptococcus suis P1/7]
 gi|253754840|ref|YP_003027980.1| ribonuclease HIII [Streptococcus suis BM407]
 gi|251815405|emb|CAZ50980.1| ribonuclease HIII [Streptococcus suis SC84]
 gi|251817304|emb|CAZ55036.1| ribonuclease HIII [Streptococcus suis BM407]
 gi|251819262|emb|CAR44544.1| ribonuclease HIII [Streptococcus suis P1/7]
 gi|292557671|gb|ADE30672.1| Ribonuclease HIII [Streptococcus suis GZ1]
 gi|319757381|gb|ADV69323.1| ribonuclease HIII [Streptococcus suis JS14]
          Length = 296

 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 74/194 (38%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITS--- 77
           P+ G DEVG G+  G + VVA  +   ++      G++DSKK++ +K  ++   +     
Sbjct: 83  PMIGTDEVGNGSYFGGLAVVAGFVRPEDHSFLKSLGVDDSKKMTDQKICQIAPLLKEKIP 142

Query: 78  -SAIISISSASHQYIDK----HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++      ++ I++     ++  A  +     +    V P   +ID  +  ++    
Sbjct: 143 HQALLLSPKKYNEVIEQGYNAVSVKVALHNQAIFLLLQKGVQPEKIVIDAFTSSQNYQKY 202

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +SIIA+      +    +     G     G  +
Sbjct: 203 LKKEANQFANPVTLEEKAEGRYLAVAVSSIIARSMFLENLVQLGQL---VGMHLPSGAGS 259

Query: 182 AKHQQV---IKEKG 192
              Q     +K+ G
Sbjct: 260 KSDQVAASILKQYG 273


>gi|146317882|ref|YP_001197594.1| ribonuclease HIII [Streptococcus suis 05ZYH33]
 gi|146320071|ref|YP_001199782.1| ribonuclease HIII [Streptococcus suis 98HAH33]
 gi|145688688|gb|ABP89194.1| Ribonuclease HIII [Streptococcus suis 05ZYH33]
 gi|145690877|gb|ABP91382.1| Ribonuclease HIII [Streptococcus suis 98HAH33]
          Length = 302

 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 74/194 (38%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITS--- 77
           P+ G DEVG G+  G + VVA  +   ++      G++DSKK++ +K  ++   +     
Sbjct: 89  PMIGTDEVGNGSYFGGLAVVAGFVRPEDHSFLKSLGVDDSKKMTDQKICQIAPLLKEKIP 148

Query: 78  -SAIISISSASHQYIDK----HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++      ++ I++     ++  A  +     +    V P   +ID  +  ++    
Sbjct: 149 HQALLLSPKKYNEVIEQGYNAVSVKVALHNQAIFLLLQKGVQPEKIVIDAFTSSQNYQKY 208

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +SIIA+      +    +     G     G  +
Sbjct: 209 LKKEANQFANPVTLEEKAEGRYLAVAVSSIIARSMFLENLVQLGQL---VGMHLPSGAGS 265

Query: 182 AKHQQV---IKEKG 192
              Q     +K+ G
Sbjct: 266 KSDQVAASILKQYG 279


>gi|332358153|gb|EGJ35983.1| ribonuclease HIII [Streptococcus sanguinis SK1056]
          Length = 296

 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 78/199 (39%), Gaps = 30/199 (15%)

Query: 20  EKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY--- 72
            +N   + G DEVG G+  G + VVA+ +    +      G+ DSK ++ +K  +L    
Sbjct: 78  SQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDRKIRQLATVL 136

Query: 73  -EKITSSAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
            EKI   A++      ++ I    +  ++  A  +   + +    + P   +ID  +  +
Sbjct: 137 KEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKGINPEKIVIDAFTSQQ 196

Query: 128 D-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
           +            P     + K +   L++A +SIIA   RD  +        + G+   
Sbjct: 197 NYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIA---RDLFLENLENLSQELGYTLP 253

Query: 177 VGYPTAKHQQV---IKEKG 192
            G  +   Q     ++  G
Sbjct: 254 SGAGSKSDQVASQILQAYG 272


>gi|73916702|gb|AAZ93219.1| RNase HII [Streptococcus pneumoniae]
          Length = 291

 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREE----LYEKIT 76
           P+ G DEVG G+  G + VVAA +    +      G+ DSK ++ +K  +    L EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDTFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|315222238|ref|ZP_07864144.1| ribonuclease HIII [Streptococcus anginosus F0211]
 gi|315188571|gb|EFU22280.1| ribonuclease HIII [Streptococcus anginosus F0211]
          Length = 296

 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 79/204 (38%), Gaps = 29/204 (14%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREE 70
           E     +   P+ G DEVG G+  G + VVA+ +    +      G+ DSK ++ +K  +
Sbjct: 72  EKTTSHRQNCPLIGTDEVGNGSYFGGLAVVASFVTPEQHDFLRKLGVGDSKTLTDQKIRQ 131

Query: 71  ----LYEKITSSAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
               L EKI   A++      +Q I    +  ++  A  +   + +    V P   +ID 
Sbjct: 132 IVPLLKEKIQHQALLLSPKKYNQVIASGYNAVSVKVALHNQAIYLLLQTGVQPEKIVIDA 191

Query: 123 RSIPED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171
            +  ++                    K +   L++A +S+IA   RD  +        + 
Sbjct: 192 FTSDKNYQKYLQQESNRFSNPITLEKKAEGKYLAVAVSSMIA---RDLFLENLENLSQEL 248

Query: 172 GFDSHVGYPTAKHQ---QVIKEKG 192
           G++   G      +   Q+++  G
Sbjct: 249 GYELPSGAGAKSDKVASQLLQAYG 272


>gi|206901146|ref|YP_002250429.1| ribonuclease HII, putative [Dictyoglomus thermophilum H-6-12]
 gi|206740249|gb|ACI19307.1| ribonuclease HII, putative [Dictyoglomus thermophilum H-6-12]
          Length = 425

 Score = 62.4 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 67/170 (39%), Gaps = 26/170 (15%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE----------LYEK 74
            V G DEVG+G + GP++   +++  + I    ++ K    KK  +          +   
Sbjct: 83  YVLGFDEVGKGEVFGPIITCGVLIKRDYISQIPSELKTPDTKKSHDFEYWTRILSIINRY 142

Query: 75  ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129
           I+     +I     + ID+ NI++    +    ++ L       +    +ID   + E L
Sbjct: 143 ISDVFFYAIDLIQPREIDRFNINQLLDLSYTKLIKRLMEGLPSGVEARVVIDDYGVGEGL 202

Query: 130 PC-----------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
                        +    I  +   L +  AS+IAK  R+R+++   + Y
Sbjct: 203 KKFLEKERKESNFEYIFAIDSEDKFLEVKLASLIAKAHRERILKFLQEIY 252


>gi|330832064|ref|YP_004400889.1| ribonuclease HIII [Streptococcus suis ST3]
 gi|329306287|gb|AEB80703.1| ribonuclease HIII [Streptococcus suis ST3]
          Length = 296

 Score = 62.4 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 76/194 (39%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITS--- 77
           P+ G DEVG G+  G + VVA+ +   ++      G++DSKK++ +K  ++   +     
Sbjct: 83  PMIGTDEVGNGSYFGGLAVVASFVRPEDHAFLKSLGVDDSKKMTDQKICQVAPLLKEKIP 142

Query: 78  -SAIISISSASHQYIDK----HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++      ++ I++     ++  A  +     +    V P   +ID  +  ++    
Sbjct: 143 HQALLLSPKKYNEVIEQGYNAVSVKVALHNQAIFLLLQKGVQPEKIVIDAFTSSQNYQKY 202

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +SIIA+      +    +     G +   G  +
Sbjct: 203 LKKEANQFANPVTLEEKAEGKYLAVAVSSIIARAMFLENLVQLGQL---VGMNLPSGAGS 259

Query: 182 AKHQQV---IKEKG 192
              Q     +K+ G
Sbjct: 260 KSDQVAASILKQYG 273


>gi|302023278|ref|ZP_07248489.1| ribonuclease HIII [Streptococcus suis 05HAS68]
          Length = 273

 Score = 62.4 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 76/194 (39%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITS--- 77
           P+ G DEVG G+  G + VVA+ +   ++      G++DSKK++ +K  ++   +     
Sbjct: 83  PMIGTDEVGNGSYFGGLAVVASFVRPEDHAFLKSLGVDDSKKMTDQKICQVAPLLKEKIP 142

Query: 78  -SAIISISSASHQYIDK----HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++      ++ I++     ++  A  +     +    V P   +ID  +  ++    
Sbjct: 143 HQALLLSPKKYNEVIEQGYNAVSVKVALHNQAIFLLLQKGVQPEKIVIDAFTSSQNYQKY 202

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +SIIA+      +    +     G +   G  +
Sbjct: 203 LKKEANQFANPVTLEEKAEGKYLAVAVSSIIARAMFLENLVQLGQL---VGMNLPSGAGS 259

Query: 182 AKHQQV---IKEKG 192
              Q     +K+ G
Sbjct: 260 KSDQVAASILKQYG 273


>gi|320591391|gb|EFX03830.1| ribonuclease hi large subunit [Grosmannia clavigera kw1407]
          Length = 304

 Score = 62.4 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 30/129 (23%)

Query: 103 AIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIA 153
           A+   V    V      +D    P     +   V          K DS+   ++AAS+ A
Sbjct: 107 ALIRGVLARGVRVTDVYVDTVGPPATYQKKLERVFPGLRITVAKKADSLYPCVSAASVCA 166

Query: 154 KVTRDRLMRIAHKKY-------PDYGFDSHVGYPTAKH-QQVIKE-------KGPSCIHR 198
           KVTRD  + + +++Y       PD+G     GYP+       ++         GP C  R
Sbjct: 167 KVTRDVALAVLYRRYGAASASEPDWG----SGYPSDGRCTAWLRRNIHPVFGWGPEC--R 220

Query: 199 LTFRPLRNL 207
            ++   ++L
Sbjct: 221 FSWGTAKDL 229


>gi|324994248|gb|EGC26162.1| ribonuclease HIII [Streptococcus sanguinis SK678]
 gi|325697911|gb|EGD39795.1| ribonuclease HIII [Streptococcus sanguinis SK160]
          Length = 296

 Score = 62.4 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 76/199 (38%), Gaps = 30/199 (15%)

Query: 20  EKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKI 75
            +N   + G DEVG G+  G + VVA+++    +      G+ DSK ++  K  +L   +
Sbjct: 78  SQNFALI-GTDEVGNGSYFGGLAVVASLVTPDQHDFLRKLGVGDSKTLNDSKIRQLAPVL 136

Query: 76  TS----SAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
                  A++      ++ I    +  ++  A  +   + +    + P   +ID  +  +
Sbjct: 137 KEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKGINPEKIVIDAFTSQQ 196

Query: 128 D-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
           +            P     + K +   L++A +SIIA   RD  +        + G+   
Sbjct: 197 NYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIA---RDLFLENLENLSQELGYTLP 253

Query: 177 VGYPTAKHQQV---IKEKG 192
            G  +   Q     ++  G
Sbjct: 254 SGAGSKSDQVASQILQAYG 272


>gi|110004588|emb|CAK98925.1| putative ribonuclease hIII protein [Spiroplasma citri]
          Length = 299

 Score = 62.0 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 26/169 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKKREELYEKITSSAII 81
           V G DEVG G + GP+VV A  L            I DSKK++ ++   L  KI      
Sbjct: 90  VIGNDEVGVGDIFGPLVVTASYLPIATFNELSKLPIKDSKKMAKQQILSLAPKIKKMVKS 149

Query: 82  SISSASHQYIDKH-----NIHKATLDAIYHAVENL----QVIPRSALIDGR--------- 123
                +++  +K      N H     A   A+  L    Q+  ++  ID           
Sbjct: 150 ITIIINNELYNKWYTKYQNAHIIKTLAHNQALVQLLAKYQLTNKTIFIDQFVNETKYFEY 209

Query: 124 ----SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
                +   +      + KG+  SL+IA ++I+++      +     KY
Sbjct: 210 LQQTKMSSIIKDNLVFITKGEEKSLAIACSAILSRAVFLIKINELETKY 258


>gi|307706054|ref|ZP_07642873.1| ribonuclease HIII [Streptococcus mitis SK321]
 gi|307618454|gb|EFN97602.1| ribonuclease HIII [Streptococcus mitis SK321]
          Length = 293

 Score = 62.0 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + VVA+ +    +      G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    + P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGIQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +SIIA   RD  +        + G+    G  T
Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|157149738|ref|YP_001449575.1| ribonuclease HIII [Streptococcus gordonii str. Challis substr. CH1]
 gi|189043678|sp|A8AUW5|RNH3_STRGC RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|157074532|gb|ABV09215.1| ribonuclease HIII [Streptococcus gordonii str. Challis substr. CH1]
          Length = 296

 Score = 62.0 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 77/196 (39%), Gaps = 29/196 (14%)

Query: 23  MWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EK 74
              + G DEVG G+  G + VVA+ +           G+ DSK ++ +K  +L     EK
Sbjct: 80  YQAMIGTDEVGNGSYFGGLAVVASFVTKEQEDFLRKLGVGDSKTLTDQKIRQLAPILKEK 139

Query: 75  ITSSAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRS------ 124
           IT  A++      +Q I    +  ++  A  +   + +    + P   +ID  +      
Sbjct: 140 ITHQALLLSPKKYNQVIASGYNAVSVKVALHNQAIYLLLEKGIKPDQIVIDAFTSSTNYQ 199

Query: 125 --IPEDLPCQAFAVI---KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
             + ++    + A+    K +   L++A +SIIA   RD  +        + G+    G 
Sbjct: 200 RYVKQERNQVSQAIHLEEKAEGKYLAVAVSSIIA---RDLFLENLEILSQELGYQLPSGA 256

Query: 180 PTAKHQQV---IKEKG 192
                Q     +K  G
Sbjct: 257 GAKSDQVASQILKAYG 272


>gi|332295295|ref|YP_004437218.1| ribonuclease HII/HIII [Thermodesulfobium narugense DSM 14796]
 gi|332178398|gb|AEE14087.1| ribonuclease HII/HIII [Thermodesulfobium narugense DSM 14796]
          Length = 302

 Score = 61.6 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 69/169 (40%), Gaps = 24/169 (14%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS 78
                G DE G+G   GP+VVA + +  +N+      GI DSK ++ ++   L  +I +S
Sbjct: 90  FDFYIGSDESGKGDYFGPLVVAGVEMTGDNLRSLESSGIKDSKALNEERIFCLESEIINS 149

Query: 79  AIIS-----ISSASHQYIDKHNIHKATLD--AIYHAVENLQVIPRS-----ALIDGRSIP 126
            ++      +    +   + +    A L+        E +            ++D  S+ 
Sbjct: 150 KVLYKRITLLPEKYNNMYEFYKSKNANLNDILARLHFETISYFLDEKSSFKVVVDKFSVN 209

Query: 127 EDL--------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
             L          + F V++ +S  L +AAASI+A+    R M+    +
Sbjct: 210 SGLEKKFLKYKNVKFFEVVRAESEFLFVAAASILARAEFLRQMKRLSDE 258


>gi|332363155|gb|EGJ40940.1| ribonuclease HIII [Streptococcus sanguinis SK49]
          Length = 296

 Score = 61.6 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 75/199 (37%), Gaps = 30/199 (15%)

Query: 20  EKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKI 75
            +N   + G DEVG G+  G + VVA+ +    +      G+ DSK ++  K  +L   +
Sbjct: 78  SQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDSKIRQLAPVL 136

Query: 76  TS----SAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
                  A++      ++ I    +  ++  A  +   + +    + P   +ID  +  +
Sbjct: 137 KEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKSLNPEKIVIDAFTSQQ 196

Query: 128 D-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
           +            P     + K +   L++A +SIIA   RD  +        + G+   
Sbjct: 197 NYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIA---RDLFLENLENLSQELGYTLP 253

Query: 177 VGYPTAKHQQV---IKEKG 192
            G  +   Q     ++  G
Sbjct: 254 SGAGSKSDQVASQILQAYG 272


>gi|73916726|gb|AAZ93231.1| RNase HII [Streptococcus pneumoniae]
          Length = 294

 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 77/198 (38%), Gaps = 33/198 (16%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + VVA+ +    +      G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDG---------- 122
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID           
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 123 -----RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
                      +        K +   L++A +S+IA   RD  +        + G+    
Sbjct: 199 LAQETNRFSNPISNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPS 255

Query: 178 GYPTAKHQQV---IKEKG 192
           G  TA  +     ++  G
Sbjct: 256 GAGTASDKVASQILQAYG 273


>gi|225858257|ref|YP_002739767.1| ribonuclease HIII [Streptococcus pneumoniae 70585]
 gi|254808014|sp|C1C5E1|RNH3_STRP7 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|225720842|gb|ACO16696.1| ribonuclease hiii [Streptococcus pneumoniae 70585]
          Length = 293

 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREE----LYEKIT 76
           P+ G DEVG G+  G + V A  + P+        G+ DSK ++ +K  +    L EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVATFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   LS+A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|327459066|gb|EGF05414.1| ribonuclease HIII [Streptococcus sanguinis SK1057]
          Length = 296

 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 73/193 (37%), Gaps = 29/193 (15%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS---- 77
           + G DEVG G+  G + V A  + P         G+ DSK ++  K  +L   +      
Sbjct: 83  LIGTDEVGNGSYFGGLAVVASFVSPGQHDFLRKLGVGDSKTLNDSKIRQLAPVLKEKIAH 142

Query: 78  SAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED----- 128
            A++      ++ I    +  ++  A  +   + +    + P   +ID  +  ++     
Sbjct: 143 QALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKGINPEKIVIDAFTSQQNYKKYL 202

Query: 129 ------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182
                  P     + K +   L++A +SIIA   RD  +        + G+    G  + 
Sbjct: 203 KQEKNHFPNPVSLIEKAEGKFLAVAVSSIIA---RDLFLENLENLSQELGYTLPSGAGSK 259

Query: 183 -KHQ--QVIKEKG 192
             H   Q+++  G
Sbjct: 260 SDHVASQILQAYG 272


>gi|67480158|gb|AAY67993.1| ribonuclease HI large subunit [Oxyuranus scutellatus scutellatus]
          Length = 211

 Score = 61.2 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 22/138 (15%)

Query: 87  SHQYIDKHNIHKATLD----AIYHAVENLQVIPRSALIDGRSIPEDLP---------CQA 133
           S Q   K+N++  + D     I HA+++  V      +D     E             + 
Sbjct: 16  SMQRRTKYNLNALSHDTAIGLIQHALDS-GVQLAEVFVDTVGPAEKYQEKLKQQFPELEV 74

Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHVGYPT-AKHQQVIKE 190
               K DS+  +++AASI AKV RDR+++     +   D   D   GYP   K ++ + +
Sbjct: 75  TVRAKADSLFPTVSAASICAKVARDRIVKNWKFLENLEDTEMDYGSGYPNDPKTKEWLAQ 134

Query: 191 -----KGPSCIHRLTFRP 203
                 G     R ++  
Sbjct: 135 NLDPIFGYPQFVRFSWST 152


>gi|297748139|gb|ADI50685.1| Ribonuclease HIII [Chlamydia trachomatis D-EC]
 gi|297749019|gb|ADI51697.1| Ribonuclease HIII [Chlamydia trachomatis D-LC]
          Length = 302

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 74/216 (34%), Gaps = 34/216 (15%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-----NDSKKISHKKREELYEK 74
           ++++    G+DE G+G   GP+  A +          +      DSK I   K   L + 
Sbjct: 84  QQDLRSRIGVDESGKGDFFGPLCTAGVYASSPQAIEALYKTSICDSKLIPDAKILSLAQN 143

Query: 75  ITSSAIISISSASHQYIDKHNIHK---ATLDAIYHA--VENLQVIPR---SALIDGRSIP 126
           I S     + +   +  +    +     +L A  HA  ++NL   P     A+ D  +  
Sbjct: 144 IRSLCACKVITLFPEKYNALYANFQNLNSLLAWTHATIIDNLAPHPAGAVFAISDQFASS 203

Query: 127 EDLPCQAFAVIKGD---------SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
           E +  QA      D            + +AAASI+A   R+  +   H     Y      
Sbjct: 204 ERVLLQAVRKKCSDIELIQRHRAEQDVVVAAASILA---REAFLSSIHALESQYQIRLLK 260

Query: 178 GYPTAKHQQV---IKEKG------PSCIHRLTFRPL 204
           G      Q+    +  KG          H  TF  +
Sbjct: 261 GASGKVKQRAKEILHNKGQVVLEKVCKTHFKTFNEV 296


>gi|73916772|gb|AAZ93254.1| RNase HII [Streptococcus pneumoniae]
          Length = 291

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 77/194 (39%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYE----KIT 76
           P+ G DEVG G+  G + VVA+ +    +      G+ DSK ++ +K  ++      KI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKDKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++      ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPIKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   LS+A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|15604726|ref|NP_219510.1| ribonuclease HIII [Chlamydia trachomatis D/UW-3/CX]
 gi|76788720|ref|YP_327806.1| ribonuclease HIII [Chlamydia trachomatis A/HAR-13]
 gi|237802442|ref|YP_002887636.1| ribonuclease HIII [Chlamydia trachomatis B/Jali20/OT]
 gi|237804357|ref|YP_002888511.1| ribonuclease HIII [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255310808|ref|ZP_05353378.1| ribonuclease HIII [Chlamydia trachomatis 6276]
 gi|255317108|ref|ZP_05358354.1| ribonuclease HIII [Chlamydia trachomatis 6276s]
 gi|7227923|sp|O84011|RNH3_CHLTR RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|123607238|sp|Q3KN14|RNH3_CHLTA RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|3328396|gb|AAC67598.1| Ribonuclease HII [Chlamydia trachomatis D/UW-3/CX]
 gi|76167250|gb|AAX50258.1| ribonuclease HIII [Chlamydia trachomatis A/HAR-13]
 gi|231272657|emb|CAX09560.1| ribonuclease HIII [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273676|emb|CAX10454.1| ribonuclease HIII [Chlamydia trachomatis B/Jali20/OT]
 gi|289525054|emb|CBJ14523.1| ribonuclease HIII [Chlamydia trachomatis Sweden2]
 gi|296434592|gb|ADH16770.1| ribonuclease HIII [Chlamydia trachomatis E/150]
 gi|296435523|gb|ADH17697.1| ribonuclease HIII [Chlamydia trachomatis G/9768]
 gi|296436447|gb|ADH18617.1| ribonuclease HIII [Chlamydia trachomatis G/11222]
 gi|296437383|gb|ADH19544.1| ribonuclease HIII [Chlamydia trachomatis G/11074]
 gi|297139882|gb|ADH96640.1| ribonuclease HIII [Chlamydia trachomatis G/9301]
          Length = 300

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 74/216 (34%), Gaps = 34/216 (15%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-----NDSKKISHKKREELYEK 74
           ++++    G+DE G+G   GP+  A +          +      DSK I   K   L + 
Sbjct: 82  QQDLRSRIGVDESGKGDFFGPLCTAGVYASSPQAIEALYKTSICDSKLIPDAKILSLAQN 141

Query: 75  ITSSAIISISSASHQYIDKHNIHK---ATLDAIYHA--VENLQVIPR---SALIDGRSIP 126
           I S     + +   +  +    +     +L A  HA  ++NL   P     A+ D  +  
Sbjct: 142 IRSLCACKVITLFPEKYNALYANFQNLNSLLAWTHATIIDNLAPHPAGAVFAISDQFASS 201

Query: 127 EDLPCQAFAVIKGD---------SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177
           E +  QA      D            + +AAASI+A   R+  +   H     Y      
Sbjct: 202 ERVLLQAVRKKCSDIELIQRHRAEQDVVVAAASILA---REAFLSSIHALESQYQIRLLK 258

Query: 178 GYPTAKHQQV---IKEKG------PSCIHRLTFRPL 204
           G      Q+    +  KG          H  TF  +
Sbjct: 259 GASGKVKQRAKEILHNKGQVVLEKVCKTHFKTFNEV 294


>gi|168485538|ref|ZP_02710046.1| ribonuclease hiii [Streptococcus pneumoniae CDC1087-00]
 gi|73916736|gb|AAZ93236.1| RNase HII [Streptococcus pneumoniae]
 gi|73916800|gb|AAZ93268.1| RNase HII [Streptococcus pneumoniae]
 gi|73916812|gb|AAZ93274.1| RNase HII [Streptococcus pneumoniae]
 gi|183571185|gb|EDT91713.1| ribonuclease hiii [Streptococcus pneumoniae CDC1087-00]
          Length = 290

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + VVA+ +    +      G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   I  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSIKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|332364401|gb|EGJ42175.1| ribonuclease HIII [Streptococcus sanguinis SK355]
          Length = 296

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 75/199 (37%), Gaps = 30/199 (15%)

Query: 20  EKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKI 75
            +N   + G DEVG G+  G + VVA+ +    +      G+ DSK ++  K  +L   +
Sbjct: 78  SQNFALI-GTDEVGNGSYFGGLAVVASFVTPNQHDFLRKLGVGDSKTLNDSKIRQLAPVL 136

Query: 76  TS----SAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127
                  A++      ++ I    +  ++  A  +   + +    + P   +ID  +  +
Sbjct: 137 KEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKGLNPEKIVIDAFTSQQ 196

Query: 128 D-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176
           +            P     + K +   L++A +SIIA   RD  +        + G+   
Sbjct: 197 NYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIA---RDLFLENLENLSQELGYTLP 253

Query: 177 VGYPTAKHQQV---IKEKG 192
            G  +   Q     ++  G
Sbjct: 254 SGAGSKSDQVASQILQAYG 272


>gi|307710539|ref|ZP_07646975.1| ribonuclease HIII [Streptococcus mitis SK564]
 gi|307618692|gb|EFN97832.1| ribonuclease HIII [Streptococcus mitis SK564]
          Length = 293

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + VVA+ +    +      G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +      P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGAQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +SIIA   RD  +        + G+    G  T
Sbjct: 199 LAQEVNRFSNPISLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|76798409|ref|ZP_00780650.1| ribonuclease HIII [Streptococcus agalactiae 18RS21]
 gi|76586241|gb|EAO62758.1| ribonuclease HIII [Streptococcus agalactiae 18RS21]
          Length = 286

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 79/213 (37%), Gaps = 37/213 (17%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREE 70
           E+   E    P+ G DEVG G+  G + VVA+ +   ++      G+ DSK ++ +K ++
Sbjct: 61  ESCSSESQDIPIIGTDEVGNGSYFGGLAVVASFVTPKDHAYLKKLGVGDSKTLTDQKIKQ 120

Query: 71  LYEKITS----SAIISISSASHQYIDKHNIHK------ATLDAIYHAVENLQVIPRSALI 120
           +   +       A++      +Q +  +N H       A  +     +      P   +I
Sbjct: 121 IAPLLEKAIPHKALLLSPQKYNQVVSPNNKHNAVSVKVALHNQAIFLLLQDGFEPEKIVI 180

Query: 121 DGRSIPED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
           D  +  ++                    K ++  L++A +SIIA+      +        
Sbjct: 181 DAFTSSKNYQNYLKNEKNQFKQTITLEEKAENKYLAVAVSSIIARNLFLENLNKLSDDV- 239

Query: 170 DYGFDSHVGYPTAKHQ------QVIKEKGPSCI 196
            Y   S  G     HQ      Q++K  G S +
Sbjct: 240 GYKLPSGAG-----HQSDKVASQLLKAYGISSL 267


>gi|22537861|ref|NP_688712.1| ribonuclease HIII [Streptococcus agalactiae 2603V/R]
 gi|76787270|ref|YP_330330.1| ribonuclease HIII [Streptococcus agalactiae A909]
 gi|77405976|ref|ZP_00783055.1| ribonuclease HIII [Streptococcus agalactiae H36B]
 gi|77409445|ref|ZP_00786139.1| ribonuclease HIII [Streptococcus agalactiae COH1]
 gi|73917857|sp|Q8DXX3|RNH3_STRA5 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|123601321|sp|Q3JZH3|RNH3_STRA1 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|22534757|gb|AAN00585.1|AE014270_3 ribonuclease HIII [Streptococcus agalactiae 2603V/R]
 gi|76562327|gb|ABA44911.1| ribonuclease HIII [Streptococcus agalactiae A909]
 gi|77171937|gb|EAO75112.1| ribonuclease HIII [Streptococcus agalactiae COH1]
 gi|77175428|gb|EAO78218.1| ribonuclease HIII [Streptococcus agalactiae H36B]
          Length = 297

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 79/213 (37%), Gaps = 37/213 (17%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREE 70
           E+   E    P+ G DEVG G+  G + VVA+ +   ++      G+ DSK ++ +K ++
Sbjct: 72  ESCSSESQDIPIIGTDEVGNGSYFGGLAVVASFVTPKDHAYLKKLGVGDSKTLTDQKIKQ 131

Query: 71  LYEKITS----SAIISISSASHQYIDKHNIHK------ATLDAIYHAVENLQVIPRSALI 120
           +   +       A++      +Q +  +N H       A  +     +      P   +I
Sbjct: 132 IAPLLEKAIPHKALLLSPQKYNQVVSPNNKHNAVSVKVALHNQAIFLLLQDGFEPEKIVI 191

Query: 121 DGRSIPED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
           D  +  ++                    K ++  L++A +SIIA+      +        
Sbjct: 192 DAFTSSKNYQNYLKNEKNQFKQTITLEEKAENKYLAVAVSSIIARNLFLENLNKLSDDV- 250

Query: 170 DYGFDSHVGYPTAKHQ------QVIKEKGPSCI 196
            Y   S  G     HQ      Q++K  G S +
Sbjct: 251 GYKLPSGAG-----HQSDKVASQLLKAYGISSL 278


>gi|306834303|ref|ZP_07467420.1| ribonuclease HIII [Streptococcus bovis ATCC 700338]
 gi|304423476|gb|EFM26625.1| ribonuclease HIII [Streptococcus bovis ATCC 700338]
          Length = 300

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 69/179 (38%), Gaps = 26/179 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEK----IT 76
           P+ G DEVG G+  G + VVA+ +   ++      G++DSK ++  K  ++       I 
Sbjct: 84  PLIGSDEVGNGSYFGGLAVVASFVTPDDHALLKKLGVDDSKNLTDSKIRQIAPILENNIK 143

Query: 77  SSAIISISSASHQYIDKHNIHK------ATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130
             A++      +Q + K  +H       A  +   + +    V P   +ID  +  ++  
Sbjct: 144 HKALLLSPQKYNQVVGKGKMHNAVSVKVALHNQAIYLLLQDGVKPEKIVIDAFTSRQNYQ 203

Query: 131 -----------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
                             K +   L++A +SIIA+      +    ++   Y   S  G
Sbjct: 204 KYLKNEANQFANPLTLEEKAEGKYLAVAVSSIIARNLFLENLDKLSQEV-QYKLPSGAG 261


>gi|325979098|ref|YP_004288814.1| ribonuclease HIII [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|325179026|emb|CBZ49070.1| Ribonuclease HIII [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 300

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 26/180 (14%)

Query: 24  WPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEK----I 75
            P+ G DEVG G+  G + VVA+ +   ++      G++DSK ++  K  ++       I
Sbjct: 83  MPLIGSDEVGNGSYFGGLAVVASFVTPDDHALLKKLGVDDSKNLTDSKIRQIAPVLENNI 142

Query: 76  TSSAIISISSASHQYIDKHNIHK------ATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
              A++      +Q + K  +H       A  +   + +    V P   +ID  +  ++ 
Sbjct: 143 KHKALLLSPQKYNQVVGKGKMHNAVSVKVALHNQAIYLLLQDGVKPEKIVIDAFTSRQNY 202

Query: 130 P-----------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
                              K +   L++A +SIIA+      +    ++   Y   S  G
Sbjct: 203 QKYLKNEANQFANPLTLEEKAEGKYLAVAVSSIIARNLFLENLDKLSQEV-QYKLPSGAG 261


>gi|306832179|ref|ZP_07465333.1| ribonuclease HIII [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|304425618|gb|EFM28736.1| ribonuclease HIII [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
          Length = 300

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 26/180 (14%)

Query: 24  WPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEK----I 75
            P+ G DEVG G+  G + VVA+ +   ++      G++DSK ++  K  ++       I
Sbjct: 83  MPLIGSDEVGNGSYFGGLAVVASFVTPDDHALLKKLGVDDSKNLTDSKIRQIAPVLENNI 142

Query: 76  TSSAIISISSASHQYIDKHNIHK------ATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
              A++      +Q + K  +H       A  +   + +    V P   +ID  +  ++ 
Sbjct: 143 KHKALLLSPQKYNQVVGKGKMHNAVSVKVALHNQAIYLLLQDGVKPEKIVIDAFTSRQNY 202

Query: 130 P-----------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
                              K +   L++A +SIIA+      +    ++   Y   S  G
Sbjct: 203 QKYLKNEANQFANPLTLEEKAEGKYLAVAVSSIIARNLFLENLDKLSQEV-QYKLPSGAG 261


>gi|288906134|ref|YP_003431356.1| ribonuclease HIII [Streptococcus gallolyticus UCN34]
 gi|288732860|emb|CBI14439.1| ribonuclease HIII [Streptococcus gallolyticus UCN34]
          Length = 300

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 26/180 (14%)

Query: 24  WPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEK----I 75
            P+ G DEVG G+  G + VVA+ +   ++      G++DSK ++  K  ++       I
Sbjct: 83  MPLIGSDEVGNGSYFGGLAVVASFVTPDDHALLKKLGVDDSKNLTDSKIRQIAPVLENNI 142

Query: 76  TSSAIISISSASHQYIDKHNIHK------ATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129
              A++      +Q + K  +H       A  +   + +    V P   +ID  +  ++ 
Sbjct: 143 KHKALLLSPQKYNQVVGKGKMHNAVSVKVALHNQAIYLLLQDGVKPEKIVIDAFTSRQNY 202

Query: 130 P-----------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
                              K +   L++A +SIIA+      +    ++   Y   S  G
Sbjct: 203 QKYLKNEANQFANPLTLEEKAEGKYLAVAVSSIIARNLFLENLDKLSQEV-QYKLPSGAG 261


>gi|73916722|gb|AAZ93229.1| RNase HII [Streptococcus pneumoniae]
          Length = 290

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + VVA+ +    +      G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|73916710|gb|AAZ93223.1| RNase HII [Streptococcus pneumoniae]
 gi|73916742|gb|AAZ93239.1| RNase HII [Streptococcus pneumoniae]
 gi|73916744|gb|AAZ93240.1| RNase HII [Streptococcus pneumoniae]
 gi|73916746|gb|AAZ93241.1| RNase HII [Streptococcus pneumoniae]
 gi|73916748|gb|AAZ93242.1| RNase HII [Streptococcus pneumoniae]
          Length = 290

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + VVA+ +    +      G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|289168568|ref|YP_003446837.1| predicted ribonuclease HIII [Streptococcus mitis B6]
 gi|288908135|emb|CBJ22976.1| predicted ribonuclease HIII [Streptococcus mitis B6]
          Length = 293

 Score = 60.5 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + VVA+ +    +      G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    + P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGIQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +SIIA   RD  +        + G+    G  T
Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|322386130|ref|ZP_08059764.1| ribonuclease HIII [Streptococcus cristatus ATCC 51100]
 gi|321269822|gb|EFX52748.1| ribonuclease HIII [Streptococcus cristatus ATCC 51100]
          Length = 294

 Score = 60.5 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 77/204 (37%), Gaps = 29/204 (14%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREE 70
           E   +      + G DEVG G+  G + VVA+ +    +      G+ DSK ++  K  +
Sbjct: 70  EEASKTSQKISLIGTDEVGNGSYFGGLAVVASFVSPEQHAFLRKLGVGDSKALTDLKIRQ 129

Query: 71  LYE----KITSSAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
           L      +I   A++      ++ +    +  ++  A  +   + +   ++ P   +ID 
Sbjct: 130 LAPILKKEIQHQALLLSPEKYNEVVASGYNAVSVKVALHNQAIYLLLQKRLRPEKIVIDA 189

Query: 123 RSIPED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171
            +  ++            P     + K +   L++A +SIIA   RD  +        + 
Sbjct: 190 FTSQQNYDKYLQNEKNHFPNPVSLIEKAEGKFLAVAVSSIIA---RDLFLENLENLSQEL 246

Query: 172 GFDSHVGYPTAKHQQV---IKEKG 192
           G+    G  +   Q     ++  G
Sbjct: 247 GYTLPSGAGSKSDQVASQILQAYG 270


>gi|332522787|ref|ZP_08399039.1| ribonuclease HIII [Streptococcus porcinus str. Jelinkova 176]
 gi|332314051|gb|EGJ27036.1| ribonuclease HIII [Streptococcus porcinus str. Jelinkova 176]
          Length = 319

 Score = 60.5 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 27/198 (13%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + V A  ++P + P     G+NDSK ++  K  ++     EKI 
Sbjct: 102 PLIGSDEVGNGSYFGGLAVVASYVEPTDHPYLKELGVNDSKTLNDHKIRQIAPLLEEKIR 161

Query: 77  SSAIISISSASHQYI------DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED-- 128
             A++      +Q +      +  ++  A  +     +    V P   +ID  +  ++  
Sbjct: 162 HKALLLSPQKYNQMVGPDKAYNAVSVKVALHNQAIFLLLQSGVKPSKIVIDAFTSKQNYQ 221

Query: 129 ---------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
                     P     + K +   L++A +SIIA+      +    K+   Y   S  G 
Sbjct: 222 KHLKKEKNQFPNPLSLIEKAEGQFLAVAVSSIIARNLFLENLDHLSKEL-GYQLPSGAGK 280

Query: 180 PTA-KHQQVIKEKGPSCI 196
            +     Q+IK  G S +
Sbjct: 281 ASDLVASQLIKAYGMSAL 298


>gi|149012155|ref|ZP_01833264.1| ribonuclease HIII [Streptococcus pneumoniae SP19-BS75]
 gi|147763757|gb|EDK70691.1| ribonuclease HIII [Streptococcus pneumoniae SP19-BS75]
          Length = 293

 Score = 60.5 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + VVA+ +    +      G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
             A++   S  ++ I D++N   +  A  +   + +    V P   +ID  +  ++    
Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|254443118|ref|ZP_05056594.1| ribonuclease HIII [Verrucomicrobiae bacterium DG1235]
 gi|198257426|gb|EDY81734.1| ribonuclease HIII [Verrucomicrobiae bacterium DG1235]
          Length = 334

 Score = 60.5 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 10/91 (10%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS 82
           AG+DE G+G L GPVV A +I D  +I      GI DSK I+  +  +L + I  +  +S
Sbjct: 109 AGMDESGKGDLFGPVVTACVIADKVHIDQWVKDGIRDSKTITDSRILKLDKIIRGTKGVS 168

Query: 83  ISSA------SHQYIDKHNIHKATLDAIYHA 107
           + +        ++ + K   +   L A  HA
Sbjct: 169 VETCFCGMPKYNELMGKPRANLNLLLAWQHA 199


>gi|313889744|ref|ZP_07823386.1| ribonuclease HIII [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121789|gb|EFR44886.1| ribonuclease HIII [Streptococcus pseudoporcinus SPIN 20026]
          Length = 305

 Score = 60.5 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 76/198 (38%), Gaps = 27/198 (13%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI 80
           P+ G DEVG G+  G + V A  ++P++ P     G+NDSK ++  K  ++   +     
Sbjct: 88  PLIGSDEVGNGSYFGGLAVVASYVEPSDHPYLKELGVNDSKTLNDHKIRQIAPLLEKKIR 147

Query: 81  ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSIPED-- 128
                 S +  ++           ++  A  +     +    V P   +ID  +  ++  
Sbjct: 148 HKALLLSPKKYNQLVGPSKAYNAVSVKVALHNQAIFLLLQSGVKPSKIVIDAFTSKQNYQ 207

Query: 129 ---------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
                     P     + K +   L++A +SIIA+      +    K+   Y   S  G 
Sbjct: 208 KHLKKEKNQFPNPLSFIEKAEGQFLAVAVSSIIARNLFLENLDHLSKEL-GYQLPSGAGK 266

Query: 180 PTA-KHQQVIKEKGPSCI 196
            +     Q+IK  G S +
Sbjct: 267 ASDLVASQLIKAYGMSAL 284


>gi|255710295|gb|ACU30967.1| ribonuclease HI [Ochlerotatus triseriatus]
          Length = 235

 Score = 60.5 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 68/173 (39%), Gaps = 31/173 (17%)

Query: 62  KISHKKREELYEKITSSAI------ISISSASHQYID-------KHNIHKATLDAIYHAV 108
           +++ +KR+ +++++            ++   S   I        K ++++ ++D+    +
Sbjct: 1   QLTEEKRDVIFDEMNQKDYATESIGWAVEVISPNDICMSMLRRTKRSLNEVSMDSAIGLI 60

Query: 109 E---NLQVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVT 156
               +  V      +D    PE    +   +          K DS    ++AASI AKV+
Sbjct: 61  NKAIDAGVNIAEVYVDTVGPPEKYQAKLKQLFPKFKITVAKKADSTYPIVSAASICAKVS 120

Query: 157 RDRLMRIAHKKYP-DYGFDSHVGY---PTAKHQQVIKE--KGPSCIHRLTFRP 203
           RD  +++   +   + G +   GY   PT K+     E   G   + R ++  
Sbjct: 121 RDHALKVWTFREGLEEGINFGSGYPGDPTTKNFLGTYELVFGYPRLVRFSWST 173


>gi|284931417|gb|ADC31355.1| Ribonuclease HIII [Mycoplasma gallisepticum str. F]
          Length = 331

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 32/169 (18%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81
           + G DEVG G   GP+V    ++  + I      G+ DSK ++  K   +  ++      
Sbjct: 110 LIGCDEVGVGEYLGPIVTCCALVSDDQIDQINRLGVKDSKLLTDDKIVNIANELRKFIKF 169

Query: 82  SISSASH--------QYIDKHNIHKATLDAIYHA----------VENLQVIPRSALIDGR 123
            I             Q  D+     A    +++A          + N+ V+ +    + +
Sbjct: 170 QIFCFDPKKGALEFNQMYDQLKNINALKAYMHNAGLILFKQKYGINNMIVLDQFV--NEK 227

Query: 124 SIPEDL-PCQAFAVI-------KGDSISLSIAAASIIAKVTRDRLMRIA 164
              E L   +   +I       K +S  LS+A ASI+A+     L +  
Sbjct: 228 KYYEHLNNYKVTPIIKIDVMEEKAESKYLSVAVASILARAYYLELCKKL 276


>gi|56421232|ref|YP_148550.1| ribonuclease HIII [Geobacillus kaustophilus HTA426]
 gi|81346706|sp|Q5KWF4|RNH3_GEOKA RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|56381074|dbj|BAD76982.1| ribonuclease HIII (RNase HIII) [Geobacillus kaustophilus HTA426]
          Length = 311

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 14/109 (12%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS 82
            G DEVG G   GP+VVAA  +D ++I      G+ DSK+++ +   ++   I  +A  +
Sbjct: 96  IGSDEVGTGDYFGPIVVAAAYVDRSHIAKIAALGVKDSKQLTDEAIHKIAPAIMETAPYA 155

Query: 83  ISSASHQYIDKHNIH-----KATLDAIYHAVENL-----QVIPRSALID 121
           ++   +   ++         K         +  L      + P + +ID
Sbjct: 156 VTVLDNAEYNRWQRSGMPQTKMKALLHNRTLAKLVDAIAPIEPEAIIID 204


>gi|289803931|ref|ZP_06534560.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 37

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           H GYPTA H + + + G +  HR +F P++ 
Sbjct: 1   HKGYPTAFHLEKLAQYGATAHHRRSFAPVKR 31


>gi|25011806|ref|NP_736201.1| ribonuclease HIII [Streptococcus agalactiae NEM316]
 gi|77413664|ref|ZP_00789848.1| ribonuclease HIII [Streptococcus agalactiae 515]
 gi|73917856|sp|Q8E3J2|RNH3_STRA3 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|24413347|emb|CAD47426.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160264|gb|EAO71391.1| ribonuclease HIII [Streptococcus agalactiae 515]
          Length = 297

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 79/213 (37%), Gaps = 37/213 (17%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREE 70
           E+   E    P+ G DEVG G+  G + VVA+ +   ++      G+ DSK ++ +K ++
Sbjct: 72  ESCSSETQDIPIIGTDEVGNGSYFGGLAVVASFVTPKDHAYLKKLGVGDSKTLTDQKIKQ 131

Query: 71  LYEKITS----SAIISISSASHQYIDKHNIHK------ATLDAIYHAVENLQVIPRSALI 120
           +   +       A++      +Q +  +N H       A  +     +      P   +I
Sbjct: 132 IAPLLEKAIPHKALLLSPQKYNQVVGPNNKHNAVSVKVALHNQAIFLLLQDGFEPEKIVI 191

Query: 121 DGRSIPED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
           D  +  ++                    K ++  L++A +SIIA+      +        
Sbjct: 192 DAFTSSKNYQNYLKNEKNQFKQTITLEEKAENKYLAVAVSSIIARNLFLENLNKLSDDV- 250

Query: 170 DYGFDSHVGYPTAKHQ------QVIKEKGPSCI 196
            Y   S  G     HQ      Q++K  G S +
Sbjct: 251 GYKLPSGAG-----HQSDKVASQLLKAYGISSL 278


>gi|329766418|ref|ZP_08257962.1| Ribonuclease HII [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137017|gb|EGG41309.1| Ribonuclease HII [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 116

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 21/113 (18%)

Query: 111 LQVIPRSALIDGRSIPEDLPCQ----------AFAVIKGDSISLSIAAASIIAKVTRDRL 160
           L++ P ++ +D   +  +   +            +    DS  + ++AASIIAKV RDR 
Sbjct: 6   LKLNPDTSYVDSCDVNPNRFGKEISKLSKNKKIRSYHHADSRFIVVSAASIIAKVVRDRE 65

Query: 161 MRIAHKKYPDYGFDSHVGYPTA-KHQQVIK-----EKGPSCIHRLTFRPLRNL 207
           +    K +     D   GYP+  K    +K             R +++P + +
Sbjct: 66  IMKLRKNH-----DLGSGYPSDSKTIDFVKLYYKTNHILPVFVRKSWKPTQKI 113


>gi|213857937|ref|ZP_03384908.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar
          Typhi str. M223]
          Length = 44

 Score = 59.7 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/33 (60%), Positives = 23/33 (69%)

Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI 57
           VAG+DEVGRG L G VV AA+ILDP     G+
Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGL 43


>gi|326203823|ref|ZP_08193685.1| ribonuclease HIII [Clostridium papyrosolvens DSM 2782]
 gi|325985921|gb|EGD46755.1| ribonuclease HIII [Clostridium papyrosolvens DSM 2782]
          Length = 302

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 22/150 (14%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELYEKITS---S 78
            G DE G+G   GP+V  A +++ +         G+ DSKK+S  + + + ++I      
Sbjct: 90  IGSDESGKGDFFGPLVTVAFLIENDKQVIELEKIGVRDSKKVSDNRIKIISQQIQEIGNF 149

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYH--AVENL--QVIPRSALID---GRSIPEDLPC 131
             I I+   +  +     +  +L A  H  A+EN+      +  +ID   G     +   
Sbjct: 150 DKILITPIKYNELYDKIKNLNSLLAWSHSKAIENIVKSNEVKMIVIDKFAGMDFISNFVL 209

Query: 132 QAFAVIKGD-------SISLSIAAASIIAK 154
           +  +  K +          +++AAASI+A+
Sbjct: 210 KKSSNNKAELVLIQNAEREIAVAAASILAR 239


>gi|323128007|gb|ADX25304.1| ribonuclease HIII [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 299

 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 73/198 (36%), Gaps = 27/198 (13%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80
           P+ G DEVG G+  G + VVA+ +   ++      G++DSK ++ +    +   +     
Sbjct: 84  PMIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKTLTDQTIRRIAPILEEKIS 143

Query: 81  ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI----- 125
                 S +  ++           ++  A  +   + +    + P   +ID  +      
Sbjct: 144 HKSLLLSPKKYNEMVGKDKPYNAVSVKVALHNQAIYLLLQEGINPEKIVIDAFTSQSNYQ 203

Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
                     P       K +S+ L++A +SIIA+      +    ++   Y   S  G 
Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESLYLAVAVSSIIARNLFLENLDTLGQEL-GYRLPSGAGQ 262

Query: 180 PT-AKHQQVIKEKGPSCI 196
            +     Q++   G S +
Sbjct: 263 ASDKVASQLLAAYGMSSL 280


>gi|251783283|ref|YP_002997588.1| ribonuclease HIII [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242391915|dbj|BAH82374.1| ribonuclease HIII [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 299

 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 73/198 (36%), Gaps = 27/198 (13%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80
           P+ G DEVG G+  G + VVA+ +   ++      G++DSK ++ +    +   +     
Sbjct: 84  PMIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKTLTDQTIRRIAPILEEKIS 143

Query: 81  ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI----- 125
                 S +  ++           ++  A  +   + +    + P   +ID  +      
Sbjct: 144 HKSLLLSPKKYNEMVGKDKPYNAVSVKVALHNQAIYLLLQEGINPEKIVIDAFTSQSNYE 203

Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
                     P       K +S+ L++A +SIIA+      +    ++   Y   S  G 
Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESLYLAVAVSSIIARNLFLENLDTLGQEL-GYRLPSGAGQ 262

Query: 180 PT-AKHQQVIKEKGPSCI 196
            +     Q++   G S +
Sbjct: 263 ASDKVASQLLAAYGMSSL 280


>gi|307708231|ref|ZP_07644698.1| ribonuclease hiii [Streptococcus mitis NCTC 12261]
 gi|307615677|gb|EFN94883.1| ribonuclease hiii [Streptococcus mitis NCTC 12261]
          Length = 293

 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 29/195 (14%)

Query: 24  WPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELY----EKI 75
           +P+ G DEVG G+  G + VVA+ +    +      G+ DSK ++  K  ++     EKI
Sbjct: 78  FPLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDLKIRQIAPILKEKI 137

Query: 76  TSSAIISISSASHQYI-DKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLP- 130
              A++   S  ++ I D++N     +     A+  L    + P   +ID  +  ++   
Sbjct: 138 QHQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLKKGLQPEKIVIDAFTSAKNYDK 197

Query: 131 ----------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
                            K +   L++A +SIIA   RD  +        + G+    G  
Sbjct: 198 YLAQEANRFSNPISLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAG 254

Query: 181 TAKHQQV---IKEKG 192
           TA  +     ++  G
Sbjct: 255 TASDKVASQILQAYG 269


>gi|322377071|ref|ZP_08051563.1| ribonuclease HIII [Streptococcus sp. M334]
 gi|321281784|gb|EFX58792.1| ribonuclease HIII [Streptococcus sp. M334]
          Length = 293

 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 77/194 (39%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYE----KIT 76
           P+ G DEVG G+  G + VVA+ +    +      G+ DSK ++ +K  +L      KI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQLAPILKDKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
              ++   S  ++ I D++N   +  A  +   + +    + P   +ID  +  ++    
Sbjct: 139 HQELLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGIQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +SIIA   RD  +        + G+    G  T
Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|187734791|ref|YP_001876903.1| ribonuclease HIII [Akkermansia muciniphila ATCC BAA-835]
 gi|187424843|gb|ACD04122.1| ribonuclease HIII [Akkermansia muciniphila ATCC BAA-835]
          Length = 294

 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 70/176 (39%), Gaps = 25/176 (14%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREE 70
           E M +     P  GIDE G+G   GP+VVA + +D          G+ DSK +    R  
Sbjct: 74  EEMEKGCGFVPHFGIDESGKGDYFGPLVVAGVYVDGGIGAALRKLGVCDSKLVGSSSRIR 133

Query: 71  -LYEKITSSA-----IISISSASHQYIDKHNIHKATLDAIYHA--VENLQV-IPR--SAL 119
            L E I         ++SI    +  +     +     A  HA  +E L   +P    AL
Sbjct: 134 CLAEGIRRVPGIRFHLVSIGPERYNQLYPEFGNLNRFLAWGHATVIEGLAAKVPDCPMAL 193

Query: 120 IDGRSIPEDLP---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166
            D  + P  L           +    ++ +S  +++AAASI+A+      M  A +
Sbjct: 194 SDQFANPFVLKRALAAKKVCVRLEQRVRAES-DIAVAAASILARERFVNWMDAAGE 248


>gi|297529143|ref|YP_003670418.1| ribonuclease HIII [Geobacillus sp. C56-T3]
 gi|297252395|gb|ADI25841.1| ribonuclease HIII [Geobacillus sp. C56-T3]
          Length = 311

 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 14/109 (12%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS 82
            G DEVG G   GP+VVAA  +D ++I      G+ DSK+++ +  + +   I  +A  +
Sbjct: 96  IGSDEVGTGDYFGPIVVAAAYVDRSHIAKIAALGVKDSKQLNDEAIKRIAPAIMETAPYA 155

Query: 83  ISSASHQYIDKHNIH-----KATLDAIYHAVENL-----QVIPRSALID 121
           ++   +   ++         K         +  L      + P + +ID
Sbjct: 156 VTVLDNAEYNRWQRSGMPQTKMKALLHNRTLAKLVDAIAPIEPEAIIID 204


>gi|319745672|gb|EFV97971.1| ribonuclease HIII [Streptococcus agalactiae ATCC 13813]
          Length = 292

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 78/213 (36%), Gaps = 37/213 (17%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREE 70
           E+   E    P+ G DEVG G+  G + VVA+ +   ++       + DSK ++ +K ++
Sbjct: 67  ESCSSESQDIPIIGTDEVGNGSYFGGLAVVASFVTPKDHAYLKKLEVGDSKTLTDQKIKQ 126

Query: 71  LYEKITS----SAIISISSASHQYIDKHNIHK------ATLDAIYHAVENLQVIPRSALI 120
           +   +       A++      +Q +  +N H       A  +     +      P   +I
Sbjct: 127 IAPLLEKAIPHKALLLSPQKYNQVVGPNNKHNAVSVKVALHNQAIFLLLQDGFEPEKIVI 186

Query: 121 DGRSIPED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
           D  +  ++                    K ++  L++A +SIIA+      +        
Sbjct: 187 DAFTSSKNYQNYLKNEKNQFKQTITLEEKAENKYLAVAVSSIIARNLFLENLNKLSDDV- 245

Query: 170 DYGFDSHVGYPTAKHQ------QVIKEKGPSCI 196
            Y   S  G     HQ      Q++K  G S +
Sbjct: 246 GYKLPSGAG-----HQSDKVASQLLKAYGISSL 273


>gi|309790298|ref|ZP_07684866.1| ribonuclease HIII [Oscillochloris trichoides DG6]
 gi|308227686|gb|EFO81346.1| ribonuclease HIII [Oscillochloris trichoides DG6]
          Length = 312

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 25/165 (15%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT----SS 78
            G+DE G+G   GP+VVAA+ +D          G+ DSK +      +L ++I     ++
Sbjct: 98  VGMDESGKGDWYGPLVVAAVYVDAQTEATLQQAGVRDSKLVDQATLPKLVQRIEQLVPAT 157

Query: 79  AIISISSAS------HQYIDKHNIHKATLDAIY-----HAVENLQVIPRSA-----LIDG 122
           A      A       +   +  NI  A L A        A    +V+          +DG
Sbjct: 158 ARYVTVLAPSDYNRRYAESNNVNILLAELYAETATRVCQATGCKRVVCDQFAQRTERLDG 217

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
                 LP     +   ++ S+++AAASI+A       ++    +
Sbjct: 218 TFTQAGLPRPTQ-MHHAEAQSIAVAAASILATARFAAELQRLGAE 261


>gi|294660432|ref|NP_853189.2| ribonuclease HIII [Mycoplasma gallisepticum str. R(low)]
 gi|284812092|gb|AAP56757.2| Ribonuclease HIII [Mycoplasma gallisepticum str. R(low)]
 gi|284930671|gb|ADC30610.1| Ribonuclease HIII [Mycoplasma gallisepticum str. R(high)]
          Length = 331

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 32/169 (18%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81
           + G DEVG G   GP+V    ++  + I      G+ DSK ++  K   +  ++      
Sbjct: 110 LIGCDEVGVGEYLGPIVTCCALVSDDQIDQINRLGVKDSKLLTDDKIVNIANELRKLIKF 169

Query: 82  SISSASH--------QYIDKHNIHKATLDAIYHA----------VENLQVIPRSALIDGR 123
            I             Q  D+     A    +++A          + N+ V+ +    + +
Sbjct: 170 QIFCFDPKKGALEFNQMYDQLKNINALKAYMHNAGLILFKQKYGINNIIVLDQFV--NEK 227

Query: 124 SIPEDL-PCQAFAVI-------KGDSISLSIAAASIIAKVTRDRLMRIA 164
              E L   +   +I       K +S  LS+A ASI+A+     L +  
Sbjct: 228 KYYEHLNNYKVTPMIKIDVMEEKAESKYLSVAVASILARAYYLELCKKL 276


>gi|77412143|ref|ZP_00788466.1| ribonuclease HIII [Streptococcus agalactiae CJB111]
 gi|77161803|gb|EAO72791.1| ribonuclease HIII [Streptococcus agalactiae CJB111]
          Length = 297

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 80/213 (37%), Gaps = 37/213 (17%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREE 70
           E+   E    P+ G DEVG G+  G + VVA+ +   ++      G+ DSK ++ +K ++
Sbjct: 72  ESCSSESQDIPIIGTDEVGNGSYFGGLAVVASFVTPKDHAYLKKLGVGDSKTLTDQKIKQ 131

Query: 71  ----LYEKITSSAIISISSASHQYIDKHNIHK------ATLDAIYHAVENLQVIPRSALI 120
               L + I   A++      +Q +  +N H       A  +     +      P   +I
Sbjct: 132 TAPLLEKAIPHKALLLSPQKYNQVVGPNNKHNAVSVKVALHNQAIFLLLQDGFEPEKIVI 191

Query: 121 DGRSIPED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169
           D  +  ++                    K ++  L++A +SIIA+      +        
Sbjct: 192 DAFTSSKNYQNYLKNEKNQFKQTITLEEKAENKYLAVAVSSIIARNLFLENLNKLSDDV- 250

Query: 170 DYGFDSHVGYPTAKHQ------QVIKEKGPSCI 196
            Y   S  G     HQ      Q++K  G S +
Sbjct: 251 GYKLPSGAG-----HQSDKVASQLLKAYGISSL 278


>gi|218905781|ref|YP_002453615.1| ribonuclease HIII [Bacillus cereus AH820]
 gi|218538277|gb|ACK90675.1| ribonuclease HIII [Bacillus cereus AH820]
          Length = 177

 Score = 58.5 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 12/103 (11%)

Query: 4   NSIPERPHFELEAMVREKNMWP--------VAGIDEVGRGALAGPVVVAAIILDPNNIP- 54
            ++P+ P   ++  V      P        + G DEVG G   GP+ V A+ +D   IP 
Sbjct: 67  QTVPQTPKIAVKKSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPL 126

Query: 55  ---FGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKH 94
               G+ DSK ++ ++   + +++      S     ++  ++ 
Sbjct: 127 LKELGVKDSKNLNDEQITAIAKQLLHVVPYSSLVLHNEKYNEL 169


>gi|322373722|ref|ZP_08048258.1| ribonuclease HIII [Streptococcus sp. C150]
 gi|321278764|gb|EFX55833.1| ribonuclease HIII [Streptococcus sp. C150]
          Length = 296

 Score = 58.2 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 73/200 (36%), Gaps = 32/200 (16%)

Query: 21  KNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNIP---FGINDSKKISHKKREELYEKIT 76
           +N+  + G DEVG G+  G + VVA+++   ++      G++DSK ++  K  +L   + 
Sbjct: 78  QNLALI-GSDEVGNGSYFGGLAVVASLVTPADHALLKSLGVDDSKNLNDSKIRQLAPLLE 136

Query: 77  SSAIISISSASHQYIDK----------HNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126
                     S Q  ++           ++  A  +     +      P   +ID  +  
Sbjct: 137 EKIPHKALLLSPQKYNEVVGDGKAHNAVSVKVALHNQAIFLLLQAGAKPDKIVIDAFTSE 196

Query: 127 ED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
           ++                    K +   L++A +SIIA   R+  +    K   + G+  
Sbjct: 197 KNYQKYLKKERNRFDNPITLEEKAEGNYLAVAVSSIIA---RNLFLENLDKLSQEVGYTL 253

Query: 176 HVGYPTAKHQQV---IKEKG 192
             G  T   Q     ++  G
Sbjct: 254 PSGAGTKSDQVAAKLLQAYG 273


>gi|330723906|gb|AEC46276.1| Ribonuclease HII [Mycoplasma hyorhinis MCLD]
          Length = 240

 Score = 58.2 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 62/178 (34%), Gaps = 34/178 (19%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI 80
            V G DEVG G     + V   +   +++         DSK ++  K E LY ++     
Sbjct: 12  YVVGCDEVGVGEYFTNLTVCCALFKESDLESQLLEQTKDSKALTALKLENLYNQLIEKIK 71

Query: 81  ISISSASHQYIDKH-----NIHKATLDAIYHAVENLQ------VIPRSALIDGR------ 123
             +     +  +       N H          ++ L+        P++ +IDG       
Sbjct: 72  FQVIVLEMEKYNYLIEQGFNSHVIKTILYLKILKQLKKEHFSTTPPQAIIIDGFVSLETF 131

Query: 124 -----SIPEDLPCQAFA--------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
                 I + L  + +         + K D      +AASIIAK +    M+   KK+
Sbjct: 132 ESYLLQIYQKLNIKHWNLKKYPLTLIKKADEKLKQASAASIIAKYSLTMTMQKREKKW 189


>gi|138896261|ref|YP_001126714.1| ribonuclease HIII [Geobacillus thermodenitrificans NG80-2]
 gi|196250218|ref|ZP_03148912.1| ribonuclease HIII [Geobacillus sp. G11MC16]
 gi|134267774|gb|ABO67969.1| Ribonuclease HIII [Geobacillus thermodenitrificans NG80-2]
 gi|196210402|gb|EDY05167.1| ribonuclease HIII [Geobacillus sp. G11MC16]
          Length = 313

 Score = 58.2 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 16/122 (13%)

Query: 16  AMVREKNMWPV--AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69
             + E+ +  +   G DEVG G   GP+VVAA  +D  ++      G+ DSK+++ +   
Sbjct: 85  TALSEQELGSLSAIGSDEVGTGDYFGPIVVAAAYVDRGHLDRIAALGVKDSKQLNDETIT 144

Query: 70  ELYEKITSSAIISISSASHQYIDKHNIH-----KATLDAIYHAVENL-----QVIPRSAL 119
            +   I  +   +++  ++   ++         K         +  L      + P + +
Sbjct: 145 RIAPTIMETVPYAVTVLTNAEYNRWQQSGMPQTKMKALLHNRTLAKLIDDIAPIEPEAII 204

Query: 120 ID 121
           ID
Sbjct: 205 ID 206


>gi|319939978|ref|ZP_08014333.1| ribonuclease HIII [Streptococcus anginosus 1_2_62CV]
 gi|319810989|gb|EFW07308.1| ribonuclease HIII [Streptococcus anginosus 1_2_62CV]
          Length = 296

 Score = 58.2 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 78/205 (38%), Gaps = 29/205 (14%)

Query: 15  EAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREE 70
           E     +   P+ G DEVG G+  G + VVA+ +    +       + DSK ++ +K  +
Sbjct: 72  EKTKSHRQNCPLIGTDEVGNGSYFGGLAVVASFVTPEQHDFLRKLRVGDSKTLTDQKIRQ 131

Query: 71  ----LYEKITSSAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDG 122
               L EKI   A++      +Q I    +  ++  A  +   + +    V P   +ID 
Sbjct: 132 IVPLLKEKIQHQALLLSPKKYNQVIAADYNAVSVKVALHNQAIYLLLQTGVQPEKIVIDA 191

Query: 123 RSIPED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171
            +  ++                    K +   L++A +S+IA   RD  +        + 
Sbjct: 192 FTSDKNYQKYVKQERNHFSNPLTLEEKAEGKYLAVAVSSMIA---RDLFLENLENLSQEL 248

Query: 172 GFDSHVGYPTAKHQ---QVIKEKGP 193
           G++   G      +   Q+++  G 
Sbjct: 249 GYELPSGAGEKSDKIASQLLQAYGI 273


>gi|282890959|ref|ZP_06299473.1| hypothetical protein pah_c032o041 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499174|gb|EFB41479.1| hypothetical protein pah_c032o041 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 323

 Score = 58.2 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 17/128 (13%)

Query: 5   SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDS 60
           + PE+ H   E ++         GIDE G+G   GP+ +A +  +  +I      G+ DS
Sbjct: 103 TYPEQTHTTQENLLGR------IGIDESGKGDFFGPLCIAGVFAEGQDILRLKALGVRDS 156

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKH---NIHKATLDAIYHA--VENL--QV 113
           K I+ K   ++  KI  S    I   +    ++     ++   L A  HA  +ENL  + 
Sbjct: 157 KTITDKDILKISAKIRESFTYHIVRINPLKYNELYGKFLNLNRLLAWGHATTIENLVEKT 216

Query: 114 IPRSALID 121
             +  +ID
Sbjct: 217 QCQDVVID 224


>gi|312868515|ref|ZP_07728715.1| ribonuclease HIII [Streptococcus parasanguinis F0405]
 gi|311096260|gb|EFQ54504.1| ribonuclease HIII [Streptococcus parasanguinis F0405]
          Length = 299

 Score = 58.2 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 72/192 (37%), Gaps = 29/192 (15%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK----ITSS 78
            G DEVG G+  G + V A  + P+        G+ DSK +  +K ++L       I   
Sbjct: 87  IGTDEVGNGSYFGGLTVVASFVTPDQHDWLKKLGVGDSKTLDDRKIQQLAPLLEENIQHQ 146

Query: 79  AIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
           A++      ++ I    +  ++  A  +   + + N  V     +ID  +  ++      
Sbjct: 147 ALLLSPKKYNEVIASGYNAVSVKVALHNQAIYLLLNKGVQAERIVIDAFTTAKNYQKYVK 206

Query: 135 AVI-----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           A             K +   L++A +SIIA+    + +    K+    GF+   G     
Sbjct: 207 AEKNQVSQAIELEEKAEGKYLAVAVSSIIARNLFLQNLEDLGKEL---GFNLPSGAGAKS 263

Query: 184 HQQV---IKEKG 192
            Q     ++  G
Sbjct: 264 DQVAAKLLQTYG 275


>gi|296875781|ref|ZP_06899843.1| ribonuclease H [Streptococcus parasanguinis ATCC 15912]
 gi|296433152|gb|EFH18937.1| ribonuclease H [Streptococcus parasanguinis ATCC 15912]
          Length = 299

 Score = 58.2 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 73/192 (38%), Gaps = 29/192 (15%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK----ITSS 78
            G DEVG G+  G + V A  + P+        G+ DSK +  +K ++L       I   
Sbjct: 87  IGTDEVGNGSYFGGLTVVASFVTPDQHDWLKKLGVGDSKTLDDRKIQQLAPLLEENIQHQ 146

Query: 79  AIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
           A++      ++ I    +  ++  A  +   + + N +V     +ID  +  ++      
Sbjct: 147 ALLLSPKKYNEVIASGYNAVSVKVALHNQAIYLLLNKRVQAERIVIDAFTTAKNYQKYVK 206

Query: 135 AVI-----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           A             K +   L++A +SIIA+    + +    K+    GF+   G     
Sbjct: 207 AEKNQVSQAIELEEKAEGKYLAVAVSSIIARNLFLQNLEDLGKEL---GFNLPSGAGAKS 263

Query: 184 HQQV---IKEKG 192
            Q     ++  G
Sbjct: 264 DQVAAKLLQTYG 275


>gi|322390269|ref|ZP_08063798.1| ribonuclease HIII [Streptococcus parasanguinis ATCC 903]
 gi|321143000|gb|EFX38449.1| ribonuclease HIII [Streptococcus parasanguinis ATCC 903]
          Length = 299

 Score = 57.8 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 72/192 (37%), Gaps = 29/192 (15%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK----ITSS 78
            G DEVG G+  G + V A  + P+        G+ DSK +  +K ++L       I   
Sbjct: 87  IGTDEVGNGSYFGGLTVVASFVTPDQHDWLKKLGVGDSKTLDDRKIQQLAPLLEENIQHQ 146

Query: 79  AIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134
           A++      ++ I    +  ++  A  +   + + N  +     +ID  +  ++      
Sbjct: 147 ALLLSPKKYNEVIASGYNAVSVKVALHNQAIYLLLNKGIQAERIVIDAFTTAKNYQKYVK 206

Query: 135 AVI-----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183
           A             K +   L++A +SIIA+    + +    K+    GF+   G     
Sbjct: 207 AEKNQVTQAIDLEEKAEGKYLAVAVSSIIARNLFLQNLEDLGKEL---GFNLPSGAGAKS 263

Query: 184 HQQV---IKEKG 192
            Q     ++  G
Sbjct: 264 DQVAAKLLQTYG 275


>gi|193216613|ref|YP_001999855.1| ribonuclease HIII [Mycoplasma arthritidis 158L3-1]
 gi|193001936|gb|ACF07151.1| ribonuclease HIII [Mycoplasma arthritidis 158L3-1]
          Length = 236

 Score = 57.8 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 75/192 (39%), Gaps = 35/192 (18%)

Query: 23  MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS 78
              + G+DE G G    PV+  +  +   N+      G+ DSK +   K  EL  K+ + 
Sbjct: 8   YDLLIGVDETGVGDYFTPVISVSCFIPKTNLELVKELGVKDSKLLKENKIIELASKLKTL 67

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVEN------LQVIPR--SALIDG----RSIP 126
                 + S    +K    K   + I   + +      L+V+ +    L+D     R + 
Sbjct: 68  VKWKSLTLSQAGYNKLISAKINNNEIKTLIHSKTINNLLKVLDQKVDVLVDQYTISRQVY 127

Query: 127 EDLPCQAFAV---------------IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171
           E+   +  ++                K +S SL++A+ASIIA   R  L+     +   Y
Sbjct: 128 ENHLIKLQSIKWLDFQKPNATIYLTTKAESKSLAVASASIIA---RSILLEKIKAQREQY 184

Query: 172 GFDSHVGYPTAK 183
            F+  +G  + K
Sbjct: 185 NFNFSLG-ASKK 195


>gi|47213807|emb|CAF92580.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 157

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 8/78 (10%)

Query: 138 KGDSISLSIAAASIIAKVTRDRLMR--IAHKKYPDYGFDSHVGYPT-AKHQQVIKEK--- 191
           K DS+   ++AASI AKV RD  ++     ++  +   D   GYP   K +  +      
Sbjct: 77  KADSLFPIVSAASICAKVARDHAVKHWRFAEELGEADTDYGSGYPNDPKTKAWLLRYLDP 136

Query: 192 --GPSCIHRLTFRPLRNL 207
             G     R ++   + L
Sbjct: 137 VFGYPQFVRFSWSTAQTL 154


>gi|238490075|ref|XP_002376275.1| ribonuclease HI large subunit [Aspergillus flavus NRRL3357]
 gi|220698663|gb|EED55003.1| ribonuclease HI large subunit [Aspergillus flavus NRRL3357]
          Length = 273

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 26/136 (19%)

Query: 98  KATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAA 148
            AT++ I   VE  +V  R   ID    P     +   +          K DS+   ++A
Sbjct: 88  DATVELIREIVEGRKVDIREVYIDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSA 147

Query: 149 ASIIAKVTRDRLMRIAHK-KYPDYGFDS----------HVGYPTAKHQQVIKEKGPSCIH 197
           AS+ AKVTRD  + + H+       FD             GYP+         +    I 
Sbjct: 148 ASVAAKVTRDVALELCHEDIVKAQQFDDPSQATSTESWGSGYPSDSKCVGWLRRNMDPIF 207

Query: 198 ------RLTFRPLRNL 207
                 R ++   + +
Sbjct: 208 GWGNECRFSWGTSKEM 223


>gi|15606830|ref|NP_214210.1| hypothetical protein aq_1768 [Aquifex aeolicus VF5]
 gi|7227918|sp|O67644|RNH3_AQUAE RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|2984074|gb|AAC07614.1| hypothetical protein aq_1768 [Aquifex aeolicus VF5]
          Length = 257

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 15/162 (9%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83
           G DE G+G + G +V+  + +   N          D+K++S K+ E LY  +        
Sbjct: 75  GCDESGKGDIFGSLVLCCVCIPEENYLKVSSLNPRDTKRLSDKRVERLYLALKPLVKAYC 134

Query: 84  SSASHQYIDKH-----NIHKATLDAIYHAVENLQVIP--RSALIDGRSIPEDLPCQAFAV 136
                +  +K      N++K         +E ++        ++D               
Sbjct: 135 YEIKPEEYNKLYRKFRNLNKMMTHFYKLLIERVKEECGVSEVVVDKYQPSNPFGEDVIFE 194

Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
            + +  +L++A ASI A   R + ++   +   + G     G
Sbjct: 195 TEAE-RNLAVAVASIFA---RYKFLQSLKEVERELGIKIPKG 232


>gi|307704254|ref|ZP_07641173.1| ribonuclease HIII [Streptococcus mitis SK597]
 gi|307622165|gb|EFO01183.1| ribonuclease HIII [Streptococcus mitis SK597]
          Length = 293

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 78/194 (40%), Gaps = 29/194 (14%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELY----EKIT 76
           P+ G DEVG G+  G + VVA+ +    +      G+ DSK ++ +K  ++     EKI 
Sbjct: 79  PLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138

Query: 77  SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130
              ++   S  ++ I D++N   +  A  +   + +    + P   +ID  +  ++    
Sbjct: 139 HQTLLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGIQPEKIVIDAFTSAKNYDKY 198

Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181
                           K +   L++A +S+IA   RD  +        + G+    G  T
Sbjct: 199 LAQEANHFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255

Query: 182 AKHQQV---IKEKG 192
           A  +     ++  G
Sbjct: 256 ASDKVASQILQAYG 269


>gi|304373232|ref|YP_003856441.1| Ribonuclease HII [Mycoplasma hyorhinis HUB-1]
 gi|304309423|gb|ADM21903.1| Ribonuclease HII [Mycoplasma hyorhinis HUB-1]
          Length = 240

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 62/178 (34%), Gaps = 34/178 (19%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI 80
            V G DEVG G     + V   +   +++         DSK ++  K E LY ++     
Sbjct: 12  YVVGCDEVGVGEYFTNLTVCCTLFKESDLESQLLEQTKDSKALTALKLENLYNQLIEKIK 71

Query: 81  ISISSASHQYIDKH-----NIHKATLDAIYHAVENLQ------VIPRSALIDGR------ 123
             +     +  +       N H          ++ L+        P++ +IDG       
Sbjct: 72  FQVIVLEMEKYNYLIEQGFNSHVIKTILYLKILKQLKKEHFSTTPPQAIIIDGFVSLETF 131

Query: 124 -----SIPEDLPCQAFA--------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
                 I + L  + +         + K D      +AASIIAK +    M+   KK+
Sbjct: 132 ESYLLQIYQKLNIKHWNLKKYPLTLIKKADEKLKQASAASIIAKYSLTMTMQKREKKW 189


>gi|319946237|ref|ZP_08020477.1| ribonuclease HIII [Streptococcus australis ATCC 700641]
 gi|319747619|gb|EFV99872.1| ribonuclease HIII [Streptococcus australis ATCC 700641]
          Length = 296

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 80/206 (38%), Gaps = 30/206 (14%)

Query: 14  LEAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKRE 69
           ++  +  ++  P+ G DEVG G+  G + VVA+++    +      G+ DSK +  +K  
Sbjct: 72  IDQALAGQDF-PLIGTDEVGNGSYFGGLAVVASLVSPEQHARLKSLGVGDSKTLDDRKIR 130

Query: 70  ELYEKITS----SAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALID 121
            L   +       A++      +Q I    +  ++  A  +     +       +  ++D
Sbjct: 131 ALAPILKKEIPHQALLLTPKKYNQVIASGYNAVSVKVALHNQAIFLLLQQGAKAQKIVVD 190

Query: 122 GRSIPEDLPCQAFAVI-----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170
             +  ++      A             K +   L++A +SIIA   RD  ++   +   +
Sbjct: 191 AFTTKKNYDRYVQAEANQVPQVVTLEEKAEGKYLAVAVSSIIA---RDLFLQNLEELSQE 247

Query: 171 YGFDSHVGYPTAKHQ---QVIKEKGP 193
            G+    G  T   +   Q+++  G 
Sbjct: 248 LGYTLPSGAGTPSDKVAAQLLQAYGI 273


>gi|288817370|ref|YP_003431717.1| ribonuclease HIII [Hydrogenobacter thermophilus TK-6]
 gi|288786769|dbj|BAI68516.1| ribonuclease HIII [Hydrogenobacter thermophilus TK-6]
 gi|308750977|gb|ADO44460.1| ribonuclease HIII [Hydrogenobacter thermophilus TK-6]
          Length = 259

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 58/138 (42%), Gaps = 11/138 (7%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISH----KKREELYEKITSS 78
            G DE G+G + GP+V+  +I+ P++          D K +      KK E L   + + 
Sbjct: 77  IGCDESGKGDVFGPLVLCCVIIPPSHYKRVLSLAPKDCKLLKDEVLLKKVEALSPLVEAK 136

Query: 79  AIISISSASHQ-YIDKHNIHKATLDAIYHAVENLQVIPR-SALIDGRSIPEDLPCQAFAV 136
            ++      ++ Y +  N+++    A    +E+++        ID  S            
Sbjct: 137 CLVYEPEQLNELYSEVRNLNRIMDRAYRTLIEDVRKHYHVEITIDAYSSQSPFGKGVVFK 196

Query: 137 IKGDSISLSIAAASIIAK 154
            KG+   ++++ AS+ A+
Sbjct: 197 KKGE-RDVAVSVASMFAR 213


>gi|326407889|gb|ADZ64960.1| ribonuclease HIII [Lactococcus lactis subsp. lactis CV56]
          Length = 292

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 73/171 (42%), Gaps = 24/171 (14%)

Query: 21  KNMWPVAGIDEVGRGALAGP-VVVAAIILDPN---NIPFGINDSKKISHKKREELYE--- 73
           +    + G DEVG G+  G  +V A+ +++ N       G+ DSKK++ +K  ++     
Sbjct: 73  QKQTNLIGTDEVGNGSYFGGLMVTASFVIEENLNFLKEIGVADSKKLTDEKICQIAPKLI 132

Query: 74  -KITSSAIISISSASHQYI----DKHNIHKATLDAIYHAVE-NLQVIPRSALIDGRSIPE 127
            +I   A++   +  ++ I    +  +I  A  +   + +E  L   P + +ID  +   
Sbjct: 133 DRIPHVALVVEPAKYNEVIASGYNAVSIKVALHNQAIYLLEKQLGHKPENIVIDAFTTEA 192

Query: 128 DLPC-----------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
           +              +   + K +   L++A +SII++      ++   K+
Sbjct: 193 NYKKYVNKEQNHPLTKVTLLTKAEDQFLAVAVSSIISRYLFLENLKKLSKE 243


>gi|222153672|ref|YP_002562849.1| ribonuclease HIII [Streptococcus uberis 0140J]
 gi|254808016|sp|B9DVL0|RNH3_STRU0 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|222114485|emb|CAR43350.1| ribonuclease HIII [Streptococcus uberis 0140J]
          Length = 301

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 79/205 (38%), Gaps = 47/205 (22%)

Query: 24  WPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITS-- 77
           +P+ G DEVG G+  G + VVA+ +   ++      G++DSK ++  K  ++   +    
Sbjct: 82  YPLIGSDEVGNGSYFGGLAVVASFVKPEDHDYLKQLGVDDSKSLTDHKIRQIAPLLEEKI 141

Query: 78  ------------SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-- 123
                       + ++    A +      ++  A  +     +   +VIP   +ID    
Sbjct: 142 PHKSLLLTPQKYNTLVGKGKAYNAV----SVKVALHNQAIFLLLQQKVIPERIIIDAFTS 197

Query: 124 --------SIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTR----DRLMRIAHKKYPD 170
                      ++   +A  +I K +S  L++A +SIIA+       D L      + P 
Sbjct: 198 HSNYLKHLKTEKNQFTEAITLIEKAESQFLAVAVSSIIARNLFLENLDNLSNELGYQLP- 256

Query: 171 YGFDSHVGYPTAKHQ---QVIKEKG 192
                  G  +   Q   Q+++  G
Sbjct: 257 ------SGAGSKSDQVASQLLEAYG 275


>gi|116513211|ref|YP_812118.1| ribonuclease HIII [Lactococcus lactis subsp. cremoris SK11]
 gi|123125205|sp|Q02VL7|RNH3_LACLS RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|116108865|gb|ABJ74005.1| Ribonuclease HIII [Lactococcus lactis subsp. cremoris SK11]
          Length = 292

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 24/171 (14%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELY---- 72
           K    + G DEVG G+  G ++V A  +  N++ F    G+ DSKK++ +K  ++     
Sbjct: 73  KKQTNLIGTDEVGNGSYFGGLMVTASFVSDNHLKFLKEMGVADSKKLTDEKICQIAPKLI 132

Query: 73  EKITSSAIISISSASHQYI----DKHNIHKATLDAIYHAVE-NLQVIPRSALIDGRSIPE 127
           E+I   A++      ++ I    +  +I  A  +   + +E  L   P S +ID  +   
Sbjct: 133 EEIPHVALVVEPEKYNEVIASGYNAVSIKVALHNQAIYLLEKQLGSQPESIVIDAFTTEA 192

Query: 128 DLPCQAFA-----------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
           +      A           + K +   L++A +SII++      ++   K+
Sbjct: 193 NYKKYVSAEKNHPLTNVTLLTKAEDQFLAVAVSSIISRYKFLENLKKLSKE 243


>gi|67613296|ref|XP_667291.1| ribonuclease H1 large subunit [Cryptosporidium hominis TU502]
 gi|54658412|gb|EAL37062.1| ribonuclease H1 large subunit [Cryptosporidium hominis]
          Length = 81

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF 55
          E + R ++   + GIDE GRG + GP+V A +     N   
Sbjct: 7  ENIHRFEHKEVILGIDEAGRGPVLGPMVYACLFYPKENENL 47


>gi|15674239|ref|NP_268414.1| ribonuclease HIII [Lactococcus lactis subsp. lactis Il1403]
 gi|281492933|ref|YP_003354913.1| ribonuclease HIII [Lactococcus lactis subsp. lactis KF147]
 gi|20978735|sp|Q9CDG3|RNH3_LACLA RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|12725328|gb|AAK06355.1|AE006455_1 ribonuclease HII [Lactococcus lactis subsp. lactis Il1403]
 gi|281376585|gb|ADA66071.1| Ribonuclease HIII [Lactococcus lactis subsp. lactis KF147]
          Length = 292

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 73/171 (42%), Gaps = 24/171 (14%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYE--- 73
           +    + G DEVG G+  G ++V A  +   N+ F    G+ DSKK++ +K  ++     
Sbjct: 73  QKQTNLIGTDEVGNGSYFGGLMVTASFVSEENLNFLKEIGVADSKKLTDEKICQIAPKLI 132

Query: 74  -KITSSAIISISSASHQYI----DKHNIHKATLDAIYHAVE-NLQVIPRSALIDGRSIPE 127
            +I   A++   +  ++ I    +  +I  A  +   + +E  L   P + +ID  +   
Sbjct: 133 DRIPHVALVVEPAKYNEVIASGYNAVSIKVALHNQAIYLLEKQLGHKPENIVIDAFTTEA 192

Query: 128 DLPC-----------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
           +              +   + K +   L++A +SII++      ++   K+
Sbjct: 193 NYKKYVNKEQNHPLTKVTLLTKAEDQFLAVAVSSIISRYLFLENLKKLSKE 243


>gi|125625302|ref|YP_001033785.1| ribonuclease HIII [Lactococcus lactis subsp. cremoris MG1363]
 gi|166226671|sp|A2RP65|RNH3_LACLM RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|124494110|emb|CAL99111.1| RnhA protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300072114|gb|ADJ61514.1| ribonuclease HIII [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 292

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 24/171 (14%)

Query: 21  KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELY---- 72
           K    + G DEVG G+  G ++V A  +  N++ F    G+ DSKK++ +K  ++     
Sbjct: 73  KKQTNLIGTDEVGNGSYFGGLMVTASFVSDNHLKFLKEMGVADSKKLTDEKICQIAPKLI 132

Query: 73  EKITSSAIISISSASHQYI----DKHNIHKATLDAIYHAVE-NLQVIPRSALIDGRSIPE 127
           E+I   A++      ++ I    +  +I  A  +   + +E  L   P S +ID  +   
Sbjct: 133 EEIPHVALVVEPEKYNEVIASGYNAVSIKVALHNQAIYLLEKQLGSQPESIVIDAFTTEA 192

Query: 128 DLPCQAFA-----------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167
           +      A           + K +   L++A +SII++      ++   K+
Sbjct: 193 NYKKYVSAEKNHPLTNITLLTKAEDQFLAVAVSSIISRYKFLENLKKLSKE 243


>gi|145481239|ref|XP_001426642.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393718|emb|CAK59244.1| unnamed protein product [Paramecium tetraurelia]
          Length = 281

 Score = 55.1 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 79/211 (37%), Gaps = 35/211 (16%)

Query: 2   FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS- 60
           F N+  +     LE +  + N   + GI E GRG L GP+++A       N  + +    
Sbjct: 4   FNNNSSDELPQNLEDL--KANSEWILGIFEAGRGPLIGPIIIAGCFWPITNHNYIVKQCS 61

Query: 61  ----KKISHKKRE--ELYEKITSSAI-ISISSASHQYIDKH-------NIHKATLDAIYH 106
               K+    + E  E+  K+   A+       S Q +          ++++ +L+    
Sbjct: 62  LSLNKQFYQNQVESSEIISKLKGKALQFETIEISAQKLSTKILAYTPSDVNEISLNYTLQ 121

Query: 107 AVENL---QVIPRSALIDGRSIPEDLP---CQAFAVIKGDSI-----SLSIAAASIIAKV 155
            ++N+           I+     E+L     +   +   D         +I AA I++  
Sbjct: 122 LIKNILSKGYKIIECYINPIGFKENLNEVLKKGLGLGNNDLKFIVGMHQTIIAAQIVSLQ 181

Query: 156 TRD-RLMRIAHKKYP--DYGFDSHVGYPTAK 183
            R+ RL++I    YP    G     GYP+  
Sbjct: 182 ERNTRLLQIQQDIYPSGQMG----SGYPSDA 208


>gi|225869207|ref|YP_002745155.1| ribonuclease HIII [Streptococcus equi subsp. zooepidemicus]
 gi|225702483|emb|CAX00396.1| ribonuclease HIII [Streptococcus equi subsp. zooepidemicus]
          Length = 319

 Score = 54.7 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 68/194 (35%), Gaps = 27/194 (13%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNIP---FGINDSKKISHKKREELYEKITSSAI 80
           P+ G DEVG G+  G + VVA+ +    +      G++DSK ++ K   ++   +     
Sbjct: 102 PLIGSDEVGNGSYFGGIAVVASFVRPEEHALLRQLGVDDSKNLNDKSIAQIAPVLKKHIQ 161

Query: 81  ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI----- 125
                 S +  ++           ++  A  +     + N    P   +ID  +      
Sbjct: 162 HRALLLSPKKYNEMVGKGKPYNAVSVKVALHNQAIFLLLNDGARPEKIVIDAFTSQANYD 221

Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
                             K +   L++A +SIIA+      +    +    Y   S  G 
Sbjct: 222 KYLQQEKNHFRNPLTFEEKAEGKYLAVAVSSIIARQLFLDNLDKLSQDL-GYRLPSGAGR 280

Query: 180 PTAK-HQQVIKEKG 192
           P+ +   Q++   G
Sbjct: 281 PSDQIASQILAAYG 294


>gi|225869839|ref|YP_002745786.1| ribonuclease HIII [Streptococcus equi subsp. equi 4047]
 gi|225699243|emb|CAW92545.1| ribonuclease HIII [Streptococcus equi subsp. equi 4047]
          Length = 319

 Score = 54.7 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 68/194 (35%), Gaps = 27/194 (13%)

Query: 25  PVAGIDEVGRGALAGPV-VVAAIILDPNNIP---FGINDSKKISHKKREELYEKITSSAI 80
           P+ G DEVG G+  G + VVA+ +    +      G++DSK ++ K   ++   +     
Sbjct: 102 PLIGSDEVGNGSYFGGIAVVASFVQPEEHALLRQLGVDDSKNLNDKSIAQIAPVLKKHIQ 161

Query: 81  ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI----- 125
                 S +  ++           ++  A  +     + N    P   +ID  +      
Sbjct: 162 HRALLLSPKKYNEMVGKGKPYNAVSVKVALHNQAIFLLLNDGARPEKIVIDAFTSQANYD 221

Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179
                             K +   L++A +SIIA+      +    +    Y   S  G 
Sbjct: 222 KYLQQEKNHFRNPLTFEEKAEGKYLAVAVSSIIARQLFLDNLDKLSQDL-GYRLPSGAGR 280

Query: 180 PTAK-HQQVIKEKG 192
           P+ +   Q++   G
Sbjct: 281 PSDQIASQILAAYG 294


>gi|195977476|ref|YP_002122720.1| ribonuclease HIII [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974181|gb|ACG61707.1| ribonuclease HIII [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 291

 Score = 54.3 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 68/195 (34%), Gaps = 27/195 (13%)

Query: 24  WPVAGIDEVGRGALAGPV-VVAAIILDPNNIP---FGINDSKKISHKKREELYEKITSSA 79
            P+ G DEVG G+  G + VVA+ +   ++      G++DSK +S     ++   +    
Sbjct: 73  MPLIGSDEVGNGSYFGGIAVVASFVRPEDHALLRQLGVDDSKNLSDMSIVQIAPVLKKHI 132

Query: 80  IISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI---- 125
                  S +  ++           ++  A  +     + N    P   +ID  +     
Sbjct: 133 QHRALLLSPKKYNEMVGKGKPYNAVSVKVALHNQAIFLLLNDGARPEKIVIDAFTSQANY 192

Query: 126 -------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178
                              K +   L++A +SIIA+      +    +    Y   S  G
Sbjct: 193 DKYLQQEKNHFRNPLTFEEKAEGKYLAVAVSSIIARQLFLDNLDKLSQDL-GYRLPSGAG 251

Query: 179 YPTAK-HQQVIKEKG 192
            P+ +   QV+   G
Sbjct: 252 RPSDQIASQVLAAYG 266


>gi|171909879|ref|ZP_02925349.1| ribonuclease HIII [Verrucomicrobium spinosum DSM 4136]
          Length = 305

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 86/227 (37%), Gaps = 44/227 (19%)

Query: 6   IPERPHFELEAMV---REKNMWPV---------AGIDEVGRGALAGPVVVAAIILDPNN- 52
           + E   F LE  V    E     V          GIDE G+G   GP+V+A   ++ +  
Sbjct: 63  VEEFITFTLEPEVLGVAELGYEEVNQPEMFEPHLGIDESGKGDFFGPLVIAGAYVEASMA 122

Query: 53  ---IPFGINDSKKI-SHKKREELYEKITS----SAIISISSASHQYIDKHNIHKATLDAI 104
                 G+ DSK+I S  + E +   + +      +I I    +  +     +   L A 
Sbjct: 123 RKLRDMGVMDSKRIGSDARIEAIAGDMRAARVVHEVIVIGPEKYNELYTKFGNLNRLLAW 182

Query: 105 YHA--VEN-LQVIPR--SALIDGRSIPEDLP---------CQAFAVIKGDSISLSIAAAS 150
            HA  +EN L+ +P    AL D  + P  L                 K +S   ++AAAS
Sbjct: 183 GHARVIENLLERVPDCPMALSDQFANPRVLQSALLEKGKTIDLQQRTKAES-DPAVAAAS 241

Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV----IKEKGP 193
           I A+    R ++ A  +    G     G  +   +Q     I++ G 
Sbjct: 242 IFAREKFVRWLKEAGDRL---GILLPKG-ASPAVKQAGAELIRKHGA 284


>gi|206895101|ref|YP_002247347.1| ribonuclease hiii (rnase hiii), putative [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206737718|gb|ACI16796.1| ribonuclease hiii (rnase hiii), putative [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 251

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 2/96 (2%)

Query: 28  GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87
           G DE G+G L GP+VVA   L+         DSK++S+   E+L +   S   + I    
Sbjct: 68  GSDEAGKGDLFGPLVVAGTFLEDQLAMRLAIDSKELSNGAVEKLAQFFKSKCQVVIEQVL 127

Query: 88  HQYIDKHNIHKATLDAIYHAVENLQV-IPRSALIDG 122
              +   N++   L    +  E L    P      G
Sbjct: 128 PHEL-TSNMNAVLLKLHLNVYEELDHCRPFYVDDFG 162


>gi|322516016|ref|ZP_08068954.1| ribonuclease HIII [Streptococcus vestibularis ATCC 49124]
 gi|322125551|gb|EFX96892.1| ribonuclease HIII [Streptococcus vestibularis ATCC 49124]
          Length = 296

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 32/200 (16%)

Query: 21  KNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKIT 76
           +N+  + G DEVG G+  G + VVA+++   ++      G++DSK ++  K  ++   + 
Sbjct: 78  QNLALI-GSDEVGNGSYFGGLAVVASLVTPADHAFLKALGVDDSKNLNDTKIRQIAPLLE 136

Query: 77  SSAIISISSASHQYIDKHNIHKATLDA-------IYHAVENL---QVIPRSALIDGRSIP 126
                     S +  ++        +A          A+  L      P   +ID  +  
Sbjct: 137 EKIPHKALLLSPRKYNEVVGDGKAHNAVSVKVALHNQAIFLLLQSGAKPDKIVIDAFTSE 196

Query: 127 ED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
           ++                    K +   L++A +SIIA   R+  +    K   + G+  
Sbjct: 197 KNYQKYLKNERNRFDFPITLEEKAEGKYLAVAVSSIIA---RNLFLENLDKLSQEVGYTL 253

Query: 176 HVGYPTAKHQQV---IKEKG 192
             G      Q     ++  G
Sbjct: 254 PSGAGAKSDQVATKLLQAYG 273


>gi|321456812|gb|EFX67911.1| LOW QUALITY PROTEIN: hypothetical protein DAPPUDRAFT_260886
           [Daphnia pulex]
          Length = 178

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 11/105 (10%)

Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160
             AI  A+E L + P + L+D     + +       +K D    SI  A ++AKVTRDR 
Sbjct: 72  FLAIRRALEALPLFPSTILLDDTRWLQ-VSVSVIPFVKDDQQIWSIPTAFLLAKVTRDRQ 130

Query: 161 MRIAHKKYPDYGFDSHVG---YPTAKHQQV-------IKEKGPSC 195
           M    + YP     +  G     T K   V       ++  GP+ 
Sbjct: 131 MDKLAEDYPSMTGRTIKGMVPAATKKPYNVATSWSHPLQRHGPTP 175


>gi|312863715|ref|ZP_07723953.1| ribonuclease HIII [Streptococcus vestibularis F0396]
 gi|311101251|gb|EFQ59456.1| ribonuclease HIII [Streptococcus vestibularis F0396]
          Length = 289

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 32/200 (16%)

Query: 21  KNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKIT 76
           +N+  + G DEVG G+  G + VVA+++   ++      G++DSK ++  K  ++   + 
Sbjct: 71  QNLALI-GSDEVGNGSYFGGLAVVASLVTPADHAFLKALGVDDSKNLNDTKIRQIAPLLE 129

Query: 77  SSAIISISSASHQYIDKHNIHKATLDA-------IYHAVENL---QVIPRSALIDGRSIP 126
                     S +  ++        +A          A+  L      P   +ID  +  
Sbjct: 130 EKIPHKALLLSPRKYNEVVGDGKAHNAVSVKVALHNQAIFLLLQSGAKPDKIVIDAFTSE 189

Query: 127 ED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
           ++                    K +   L++A +SIIA   R+  +    K   + G+  
Sbjct: 190 KNYQKYLKNERNRFDFPITLEEKAEGKYLAVAVSSIIA---RNLFLENLDKLSQEVGYTL 246

Query: 176 HVGYPTAKHQQV---IKEKG 192
             G      Q     ++  G
Sbjct: 247 PSGAGAKSDQVATKLLQAYG 266


>gi|312866306|ref|ZP_07726524.1| ribonuclease HIII [Streptococcus downei F0415]
 gi|311098000|gb|EFQ56226.1| ribonuclease HIII [Streptococcus downei F0415]
          Length = 302

 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 76/199 (38%), Gaps = 27/199 (13%)

Query: 20  EKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNIP---FGINDSKKISHKKREELY--- 72
            +    + G DEVG G+  G + VVA+++   +       G+ DSK ++ +K ++L    
Sbjct: 81  AQEKLSLIGSDEVGNGSYFGGLAVVASLVRPSDQALLRDLGVADSKVLNDRKIQQLAPIL 140

Query: 73  -EKITSSAIISISSASHQYI------DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125
            EKI   A++   +  ++ +      +  ++  A  +   + +      P   +ID  + 
Sbjct: 141 EEKIPHKALLLSPAKYNEVVGPGKAHNAVSVKVALHNQAIYLLLQEVPKPDKIVIDAFTS 200

Query: 126 PEDLP-----------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174
             +                    K +   L++A +SIIA+      ++   +    Y   
Sbjct: 201 QNNYKKYLKGERNQFANPLTFEEKAEGKYLAVAVSSIIARNLFLENLKKLGEDL-GYQLP 259

Query: 175 SHVGYPT-AKHQQVIKEKG 192
           S  G  +     Q++   G
Sbjct: 260 SGAGAKSDKVASQLLAAYG 278


>gi|256078516|ref|XP_002575541.1| ribonuclease hi large subunit [Schistosoma mansoni]
 gi|238660782|emb|CAZ31774.1| ribonuclease hi large subunit, putative [Schistosoma mansoni]
          Length = 237

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 26/135 (19%)

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQVIPR------SALIDGRSIPEDL 129
           SA++ + S  +      +  K +L+ I H  A++ +Q +           +D     E  
Sbjct: 9   SAVVHVISPVYITEKMLDKSKTSLNVISHDSAIQLIQSVLDSGVNLVEVYVDTVGKAEHY 68

Query: 130 PCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY----PDYGFDSH 176
             +   +          K D     ++AASI AKVTRDR++++  K+     P+ G    
Sbjct: 69  ETKLQNLFPQLKIRVESKADDTYPIVSAASIFAKVTRDRVLQMWPKEERGSVPE-GTGLG 127

Query: 177 VGYP----TAKHQQV 187
            GYP    T  + + 
Sbjct: 128 SGYPGDPVTKSYLRA 142


>gi|290579795|ref|YP_003484187.1| putative ribonuclease [Streptococcus mutans NN2025]
 gi|254996694|dbj|BAH87295.1| putative ribonuclease [Streptococcus mutans NN2025]
          Length = 303

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 74/203 (36%), Gaps = 31/203 (15%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYE 73
           ++ K    + G DEVG G+  G + VVA+ +   ++      G++DSK ++  K +++  
Sbjct: 79  IKNKQDCSLIGSDEVGNGSYFGGLAVVASFVKQADHAFLKELGVDDSKNLTDVKIKQIAP 138

Query: 74  KITSSAIISISSASHQYIDKHNIHKATLDA-------IYHAVENL---QVIPRSALIDGR 123
            + +         S Q  ++        +A          A+  L      P   +ID  
Sbjct: 139 LLEAKLPHKALLLSPQKYNEVVGDNKLHNAVSVKVALHNQAIFLLLQEGWQPDKIVIDAF 198

Query: 124 SIPED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172
           + P++                    + +   L++A +SIIA   R   +    +     G
Sbjct: 199 TSPKNYQKYLKNENNRFSNPLTLEERAEGKYLAVAVSSIIA---RKLFLDNLDELSQKVG 255

Query: 173 FDSHVGYPT---AKHQQVIKEKG 192
           F+   G          Q++K  G
Sbjct: 256 FNLPSGAGQQSDKIASQILKTYG 278


>gi|24380229|ref|NP_722184.1| ribonuclease HIII [Streptococcus mutans UA159]
 gi|81450775|sp|Q8DSC8|RNH3_STRMU RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|24378237|gb|AAN59490.1|AE015013_9 putative ribonuclease [Streptococcus mutans UA159]
          Length = 303

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 74/203 (36%), Gaps = 31/203 (15%)

Query: 18  VREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYE 73
           ++ K    + G DEVG G+  G + VVA+ +   ++      G++DSK ++  K +++  
Sbjct: 79  IKNKQDCSLIGSDEVGNGSYFGGLAVVASFVKQADHAFLKELGVDDSKNLTDVKIKQIAP 138

Query: 74  KITSSAIISISSASHQYIDKHNIHKATLDA-------IYHAVENL---QVIPRSALIDGR 123
            + +         S Q  ++        +A          A+  L      P   +ID  
Sbjct: 139 LLEAKLPHKALLLSPQKYNEVVGDNKLHNAVSVKVALHNQAIFLLLQEGWQPDKIVIDAF 198

Query: 124 SIPED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172
           + P++                    + +   L++A +SIIA   R   +    +     G
Sbjct: 199 TSPKNYQKYLKNENNRFSNPLTLEERAEGKYLAVAVSSIIA---RKLFLDNLDELSQKVG 255

Query: 173 FDSHVGYPT---AKHQQVIKEKG 192
           F+   G          Q++K  G
Sbjct: 256 FNLPSGAGQQSDKIASQILKTYG 278


>gi|329115714|ref|ZP_08244431.1| ribonuclease HIII [Streptococcus parauberis NCFD 2020]
 gi|326906119|gb|EGE53033.1| ribonuclease HIII [Streptococcus parauberis NCFD 2020]
          Length = 299

 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 73/185 (39%), Gaps = 27/185 (14%)

Query: 19  REKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYE- 73
           + +N+  + G DEVG G+  G + VVA+++   ++      G++DSK ++  K   +   
Sbjct: 76  KNQNLALI-GSDEVGNGSYFGGIAVVASLVTPEDHTYLKELGVDDSKNLTDPKIRHIAPL 134

Query: 74  ---KITSSAIISISSASHQYI------DKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124
              +I   A++      +Q +      +  ++  A  +     +    V     +ID  +
Sbjct: 135 LEARIPHKALLLSPKKYNQMVGPDKPYNAVSVKVALHNQAIFLLLQEGVKADKIVIDAFT 194

Query: 125 IPEDLPCQ------AFAVI-----KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173
              +           F  +     K +S  L++A +SIIA+      ++    +   Y  
Sbjct: 195 SQANYQKHLKREKNQFTNVLTFQEKAESDFLAVAVSSIIARNLFLENLKELGAEL-GYQL 253

Query: 174 DSHVG 178
            S  G
Sbjct: 254 PSGAG 258


>gi|312898932|ref|ZP_07758320.1| ribonuclease HIII [Megasphaera micronuciformis F0359]
 gi|310620094|gb|EFQ03666.1| ribonuclease HIII [Megasphaera micronuciformis F0359]
          Length = 318

 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 63/168 (37%), Gaps = 27/168 (16%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT----SS 78
            G DE G+G + GP+V AA ++          +G+ DSK ++ K+  EL   +       
Sbjct: 109 IGADESGKGDVFGPLVTAACLVTRAEAATLRSWGVTDSKALTDKRILELAGPLKDLLGDR 168

Query: 79  AIISISS-------ASHQYIDKHNIHKATLDAIYHAVEN--LQVIPRSALIDGRSIPEDL 129
           A +++          +       N++    +     ++   L+      ++D     E +
Sbjct: 169 ACVTVLMPESYNYEYNKMEERGKNLNHLLGNLHGKNIKCLLLKYKCPCIIVDKFGKDEYV 228

Query: 130 ---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168
                          V KG+    ++A+AS++A+      +     ++
Sbjct: 229 LTALGSVAAGKTIIQVTKGE-RDTAVASASVLARAAFIESINELEDRF 275


>gi|240047780|ref|YP_002961168.1| Ribonuclease [Mycoplasma conjunctivae HRC/581]
 gi|239985352|emb|CAT05365.1| Ribonuclease [Mycoplasma conjunctivae]
          Length = 239

 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 49/164 (29%), Gaps = 34/164 (20%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITSSAI 80
            + G DEVG G     + V   +        N+   I DSK ++ KK EE+Y ++    I
Sbjct: 13  YIVGCDEVGVGEYFTNLTVCCALFKQEDLDTNLLNSIVDSKLLNEKKIEEIYRQLEEKII 72

Query: 81  ISISSASHQYIDKHNIHKATLDAIYHAVENL-----------QVIPRSALIDGRSIPEDL 129
             + S      +     K     I   +               +  +   IDG    E  
Sbjct: 73  FEVISLDMDKYNDLINMKFNSHEIKTILYLKLLKKLKSKYFKDIDVKKIYIDGFVTSEKF 132

Query: 130 PCQAFAVI-------------------KGDSISLSIAAASIIAK 154
                 +                    K D       AASIIAK
Sbjct: 133 FSYLEKIYQQLKVRKWDLKKFPILLEKKADEKIKQAGAASIIAK 176


>gi|222151572|ref|YP_002560728.1| hypothetical protein MCCL_1325 [Macrococcus caseolyticus JCSC5402]
 gi|254808012|sp|B9E764|RNH3_MACCJ RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|222120697|dbj|BAH18032.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 313

 Score = 52.0 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 13/112 (11%)

Query: 27  AGIDEVGRGALAGPV-VVAAIILDPNNIP---FGINDSKKISHKKREELYEK---ITSSA 79
            G DE G G   GP+ VVA+ +   N       G+ DSK +  ++  EL E+   I   +
Sbjct: 101 IGSDEAGSGDYFGPMTVVASYVSKKNAEILKVLGVMDSKNLKDRQIIELAEQIIPIIPHS 160

Query: 80  IISISSASHQYIDKHNIHKATLDAIYH--AVEN----LQVIPRSALIDGRSI 125
           ++ + +  +    +    +  + A+ H  A++N    ++      +ID  ++
Sbjct: 161 LLVLDNIKYNERKQMGWSQVKMKAVLHNEAIKNVLNKIEEPVDYIVIDQFAV 212


>gi|312601539|gb|ADQ90794.1| ribonuclease HII [Mycoplasma hyopneumoniae 168]
          Length = 246

 Score = 52.0 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 57/165 (34%), Gaps = 35/165 (21%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80
            V G DEVG G     + V   +       N +   I DSK ++ KK  +L++ I     
Sbjct: 12  LVIGCDEVGVGEYFTNLTVCCAVFREKEIKNELLIQIVDSKLLTEKKISDLFQVINIDQK 71

Query: 81  ISISSASHQYI-------DKHNIHKATLDAIYHAVENL-----QVIPRSALIDGR----- 123
           I     S +         D  N H+      +  + +L             IDG      
Sbjct: 72  IKHKFTSLEMNEYNKLIEDGLNSHQIKSLLYFRVLNDLILNLENEKINKIFIDGFVSEKK 131

Query: 124 ------SIPEDLPC-----QAFAVI---KGDSISLSIAAASIIAK 154
                  I E L       Q F +I   K D+    + AASIIAK
Sbjct: 132 FKEYFAKIAEFLKIEPWDFQKFPLILEKKADTKIKQVGAASIIAK 176


>gi|144227713|gb|AAZ44677.2| ribonuclease HII [Mycoplasma hyopneumoniae J]
 gi|144575542|gb|AAZ53956.2| ribonuclease HII [Mycoplasma hyopneumoniae 7448]
          Length = 248

 Score = 52.0 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 57/165 (34%), Gaps = 35/165 (21%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80
            V G DEVG G     + V   +       N +   I DSK ++ KK  +L++ I     
Sbjct: 14  LVIGCDEVGVGEYFTNLTVCCAVFREKEIKNELLIQIVDSKLLTEKKISDLFQVINIDQK 73

Query: 81  ISISSASHQYI-------DKHNIHKATLDAIYHAVENL-----QVIPRSALIDGR----- 123
           I     S +         D  N H+      +  + +L             IDG      
Sbjct: 74  IKHKFTSLEMNEYNKLIEDGLNSHQIKSLLYFRVLNDLILNLENEKINKIFIDGFVSEKK 133

Query: 124 ------SIPEDLPC-----QAFAVI---KGDSISLSIAAASIIAK 154
                  I E L       Q F +I   K D+    + AASIIAK
Sbjct: 134 FKEYFAKIAEFLKIEPWDFQKFPLILEKKADTKIKQVGAASIIAK 178


>gi|71893942|ref|YP_279388.1| ribonuclease HII [Mycoplasma hyopneumoniae J]
 gi|72080921|ref|YP_287979.1| ribonuclease HII [Mycoplasma hyopneumoniae 7448]
          Length = 247

 Score = 52.0 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 57/165 (34%), Gaps = 35/165 (21%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80
            V G DEVG G     + V   +       N +   I DSK ++ KK  +L++ I     
Sbjct: 13  LVIGCDEVGVGEYFTNLTVCCAVFREKEIKNELLIQIVDSKLLTEKKISDLFQVINIDQK 72

Query: 81  ISISSASHQYI-------DKHNIHKATLDAIYHAVENL-----QVIPRSALIDGR----- 123
           I     S +         D  N H+      +  + +L             IDG      
Sbjct: 73  IKHKFTSLEMNEYNKLIEDGLNSHQIKSLLYFRVLNDLILNLENEKINKIFIDGFVSEKK 132

Query: 124 ------SIPEDLPC-----QAFAVI---KGDSISLSIAAASIIAK 154
                  I E L       Q F +I   K D+    + AASIIAK
Sbjct: 133 FKEYFAKIAEFLKIEPWDFQKFPLILEKKADTKIKQVGAASIIAK 177


>gi|324513411|gb|ADY45510.1| Ribonuclease H2 subunit A [Ascaris suum]
          Length = 190

 Score = 52.0 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 23/135 (17%)

Query: 89  QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI---------KG 139
           +Y      H + ++ I  A+EN  +      +D          +  A           K 
Sbjct: 6   KYSLNELSHTSAINLIKFALEN-GINVTEIYVDTVGPKSTYQAKLQAHFPNISITVTEKA 64

Query: 140 DSISLSIAAASIIAKVTRDRLMRIA-----HKKYPDYGFDSHVGYP-TAKHQQVIKE--- 190
           DS+   + AASI AKVTRD ++R           P+ G+    GYP     ++ +     
Sbjct: 65  DSLFPVVGAASIAAKVTRDGVLRDWVFVEGDVTVPEGGY--GSGYPGDPNTRKFLVTSID 122

Query: 191 --KGPSCIHRLTFRP 203
              G S + R +++ 
Sbjct: 123 PVFGYSSLVRFSWKT 137


>gi|54020259|ref|YP_116121.1| ribonuclease HII [Mycoplasma hyopneumoniae 232]
 gi|53987432|gb|AAV27633.1| ribonuclease HII [Mycoplasma hyopneumoniae 232]
          Length = 248

 Score = 52.0 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 58/165 (35%), Gaps = 35/165 (21%)

Query: 25  PVAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAI 80
            V G DEVG G     + V   +       N +   I DSK ++ KK  +L++ I +   
Sbjct: 14  LVIGCDEVGVGEYFTNLTVCCAVFREKEIENELLIQIVDSKLLTEKKISDLFQVINTDQK 73

Query: 81  ISISSASHQYIDK-------HNIHKATLDAIYHAVENL-----QVIPRSALIDGR----- 123
           I     S +  +         N H+      +  + +L             IDG      
Sbjct: 74  IKHKFTSLEMNEYNKLIENGLNSHQIKSLLYFRVLNDLILNLENEKINKIFIDGFVSEKK 133

Query: 124 ------SIPEDLPC-----QAFAVI---KGDSISLSIAAASIIAK 154
                  I E L       Q F +I   K D+    + AASIIAK
Sbjct: 134 FKEYFAKIAEFLKIEPWDFQKFPLILEKKADTKIKQVGAASIIAK 178


>gi|228477139|ref|ZP_04061777.1| ribonuclease hiii [Streptococcus salivarius SK126]
 gi|228251158|gb|EEK10329.1| ribonuclease hiii [Streptococcus salivarius SK126]
          Length = 289

 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 32/200 (16%)

Query: 21  KNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKIT 76
           +N+  + G DEVG G+  G + VVA+++   ++      G++DSK ++  K  ++   + 
Sbjct: 71  QNLALI-GSDEVGNGSYFGGLAVVASLVTPADHAFLRSLGVDDSKNLNDVKIRQIAPILE 129

Query: 77  SSAIISISSASHQYIDKHNIHKATLDA-------IYHAVENL---QVIPRSALIDGRSIP 126
                     S +  ++      + +A          A+  L      P   +ID  +  
Sbjct: 130 EKIPHKALLLSPRKYNEVVGDGKSHNAVSVKVALHNQAIFLLLQTGAKPDKIVIDAFTSE 189

Query: 127 ED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
           ++                    K +   L++A +SIIA   R+  +    K   + G+  
Sbjct: 190 KNYQKYLKNERNRFDFPITLEEKAEGKYLAVAVSSIIA---RNLFLENLDKLSQEVGYTL 246

Query: 176 HVGYPTAKHQQV---IKEKG 192
             G      Q     ++  G
Sbjct: 247 PSGAGAKSDQVAAKLLQAYG 266


>gi|224476247|ref|YP_002633853.1| ribonuclease HIII [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222420854|emb|CAL27668.1| putative ribonuclease HIII [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 314

 Score = 51.2 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI 75
            G DE G G   GP+ V A  +   N       G++DSKK++  K  E+ E+I
Sbjct: 97  IGSDEAGSGDYFGPLTVCAAYVSKKNAEILKTLGVDDSKKLTDAKIVEIAEQI 149


>gi|73662964|ref|YP_301745.1| ribonuclease HIII [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123642317|sp|Q49WQ7|RNH3_STAS1 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|72495479|dbj|BAE18800.1| putative ribonuclease HIII [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 310

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 9/104 (8%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS---SA 79
            G DE G G   GP+ V A  +   N+      G++DSKK++  K  EL E++ +    +
Sbjct: 93  IGSDEAGSGDYFGPLTVCAAYVSHKNVQILKALGVDDSKKLTDTKIVELAEQLVTFIPHS 152

Query: 80  IISISSASHQYIDKHNIHKATLDAIYH--AVENLQVIPRSALID 121
           ++ +++  +    K    +  + A+ H  A++N+     +  +D
Sbjct: 153 LLVMNNEKYNEKQKAGWSQVKMKAVLHNEAIKNVTQKIDTTELD 196


>gi|254751206|ref|ZP_05203245.1| ribonuclease HII [Bacillus anthracis str. Vollum]
          Length = 32

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207
           +GY   +H + I+  G    HR +F P++++
Sbjct: 1   MGYGKKQHLEAIEAHGVLEEHRKSFAPIKDM 31


>gi|116628458|ref|YP_821077.1| ribonuclease HIII [Streptococcus thermophilus LMD-9]
 gi|122266947|sp|Q03IU1|RNH3_STRTD RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|116101735|gb|ABJ66881.1| Ribonuclease HIII [Streptococcus thermophilus LMD-9]
 gi|312279078|gb|ADQ63735.1| Ribonuclease HIII [Streptococcus thermophilus ND03]
          Length = 296

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 71/200 (35%), Gaps = 32/200 (16%)

Query: 21  KNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKIT 76
           +N+  + G DEVG G+  G + VVA+++   ++      G++DSK ++  K  ++   + 
Sbjct: 78  QNLALI-GSDEVGNGSYFGGLAVVASLVTPADHAFLKSLGVDDSKNLNDSKIRQIAPLLE 136

Query: 77  SSAIISISSASHQYIDKHNIHKATLDA-------IYHAVENL---QVIPRSALIDGRSIP 126
                     S +  ++        +A          A+  L      P   +ID     
Sbjct: 137 EKIPHKALLLSPRKYNEVVGDGKAHNAVSVKVALHNQAIFLLLQSGAKPDKIVIDAFISE 196

Query: 127 EDLPC-----------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
           ++                    K +   L++A +SIIA   R+  +    K   + G+  
Sbjct: 197 KNYQKYLKNERNHFEFPITLEEKAEGKYLAVAVSSIIA---RNLFLENLDKLSQEVGYTL 253

Query: 176 HVGYPTAKHQQV---IKEKG 192
             G      Q     ++  G
Sbjct: 254 PSGAGAKSDQVAAKLLQAYG 273


>gi|55821737|ref|YP_140179.1| ribonuclease HIII [Streptococcus thermophilus LMG 18311]
 gi|73917860|sp|Q5M2P2|RNH3_STRT2 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|55737722|gb|AAV61364.1| ribonuclease HIII [Streptococcus thermophilus LMG 18311]
          Length = 296

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 32/200 (16%)

Query: 21  KNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKIT 76
           +N+  + G DEVG G+  G + VVA+++   ++      G++DSK ++  K  ++   + 
Sbjct: 78  QNLALI-GSDEVGNGSYFGGLAVVASLVTPADHAFLKSLGVDDSKNLNDSKIRQIAPLLE 136

Query: 77  SSAIISISSASHQYIDKHNIHKATLDA-------IYHAVENL---QVIPRSALIDGRSIP 126
                     S +  ++        +A          A+  L      P   +ID     
Sbjct: 137 EKIPHKALLLSPRKYNEVVGDGKAHNAVSVKVALHNQAIFLLLQSGAKPDKIVIDAFISE 196

Query: 127 EDLPC-----------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
           ++                    K +   L++A +SIIA   R+  ++   K   + G+  
Sbjct: 197 KNYQKYFKNERNHFEFPITLEEKAEGKYLAVAVSSIIA---RNLFLKNLDKLSQEVGYTL 253

Query: 176 HVGYPTAKHQQV---IKEKG 192
             G      Q     ++  G
Sbjct: 254 PSGAGAKSDQVAAKLLQAYG 273


>gi|55823657|ref|YP_142098.1| ribonuclease HIII [Streptococcus thermophilus CNRZ1066]
 gi|73917859|sp|Q5LY37|RNH3_STRT1 RecName: Full=Ribonuclease HIII; Short=RNase HIII
 gi|55739642|gb|AAV63283.1| ribonuclease HIII [Streptococcus thermophilus CNRZ1066]
          Length = 296

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 32/200 (16%)

Query: 21  KNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKIT 76
           +N+  + G DEVG G+  G + VVA+++   ++      G++DSK ++  K  ++   + 
Sbjct: 78  QNLALI-GSDEVGNGSYFGGLAVVASLVTPADHAFLKSLGVDDSKNLNDSKIRQIAPLLE 136

Query: 77  SSAIISISSASHQYIDKHNIHKATLDA-------IYHAVENL---QVIPRSALIDGRSIP 126
                     S +  ++        +A          A+  L      P   +ID     
Sbjct: 137 EKIPHKALLLSPRKYNEVVGDGKAHNAVSVKVALHNQAIFLLLQSGAKPDKIVIDAFISE 196

Query: 127 EDLPC-----------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175
           ++                    K +   L++A +SIIA   R+  ++   K   + G+  
Sbjct: 197 KNYQKYLKNERNHFEFPITLEEKAEGKYLAVAVSSIIA---RNLFLKNLDKLSQEVGYTL 253

Query: 176 HVGYPTAKHQQV---IKEKG 192
             G      Q     ++  G
Sbjct: 254 PSGAGAKSDQVAAKLLQAYG 273


>gi|255660204|ref|ZP_05405613.1| hypothetical protein MgenG_01327 [Mycoplasma genitalium G37]
 gi|166078775|gb|ABY79393.1| ribonuclease HIII [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 235

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 70/186 (37%), Gaps = 34/186 (18%)

Query: 24  WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79
           + + G DE G+G   G + V+A++++   +       + DSKK+S    + L + I ++ 
Sbjct: 9   FYLIGSDESGKGDSFGGICVSAVLIEKKQLINLENLQVTDSKKLSDHTVKLLAKSIQTTV 68

Query: 80  --IISISSASHQYIDKHNIHKATLD--------AIYHAVENLQVIPRSALID-------- 121
               +I+    QY D     K T               +E  Q++ ++  I         
Sbjct: 69  MDHHTITLDPKQYNDLTKSLKNTNLLLTNLHCQLYQKLLEKNQLLRQTVTISIDQFANQE 128

Query: 122 ---------GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172
                         + +      +I G++ SL IAAASI+A   RD  +           
Sbjct: 129 LFVNYLNKLTNFTDKTVLLPDQFLINGETKSLVIAAASILA---RDSFINQLQLLNQKVN 185

Query: 173 FDSHVG 178
           +D   G
Sbjct: 186 YDLPKG 191


>gi|325117006|emb|CBZ52559.1| Ribonuclease, related [Neospora caninum Liverpool]
          Length = 297

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138
           ++ SI +   + I    + K       H++  +      +LI  R++   +     A  K
Sbjct: 32  SLWSIHAIRPEEISAKMLRK-----KKHSLNEISHETAISLIL-RTVQSGVNVAEVAE-K 84

Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAH 165
            DS+   ++AASI+AKV+RDR++    
Sbjct: 85  ADSLYPVVSAASILAKVSRDRMLVQWK 111


>gi|164655636|ref|XP_001728947.1| hypothetical protein MGL_3941 [Malassezia globosa CBS 7966]
 gi|159102835|gb|EDP41733.1| hypothetical protein MGL_3941 [Malassezia globosa CBS 7966]
          Length = 269

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 31/114 (27%)

Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA-------HKKYPDYG----- 172
            P     +     K D+    + AASI AKVTRD  +             +P+       
Sbjct: 53  FPRHSHIEWIVARKADATYPIVGAASIAAKVTRDACVDHWMYAEPLQSVHHPEISKSSGK 112

Query: 173 -------------FDSHVGYP-TAKHQQVIKE-----KGPSCIHRLTFRPLRNL 207
                        + +  GYP   K  + +KE      G + + R ++   +++
Sbjct: 113 RKRGNNDDEETDIWATGSGYPGDPKTVRYLKETLDPVFGWARLVRFSWATAKSM 166


>gi|67613277|ref|XP_667290.1| ribonuclease HI large subunit [Cryptosporidium hominis TU502]
 gi|54658405|gb|EAL37055.1| similar to ribonuclease HI large subunit (RNase HI large subunit)
           [Cryptosporidium hominis]
          Length = 144

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 18/97 (18%)

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK--YPDYGFDSHV--- 177
            +I   +        K D++  S++ ASI+AKV RD  +     +       F+ +    
Sbjct: 1   MNIFPGIDITVKP--KADALFPSVSGASILAKVKRDDFLSNWWTQASVESCDFNGNKISN 58

Query: 178 -----GYP-TAKHQQVIKE-----KGPSCIHRLTFRP 203
                GYP   K ++ ++       G   I R ++  
Sbjct: 59  YEQGSGYPGDPKTKEFLRRVFDPVFGFPNIVRFSWST 95


>gi|298244281|ref|ZP_06968087.1| ribonuclease HIII [Ktedonobacter racemifer DSM 44963]
 gi|297551762|gb|EFH85627.1| ribonuclease HIII [Ktedonobacter racemifer DSM 44963]
          Length = 311

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 19  REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEK 74
           R   +  + G DE G+G   GP+V+AA+ +D +     +  G+ DSK+++     E+  +
Sbjct: 96  RATGLARI-GCDESGKGDYYGPLVMAALYVDNHTEEQLLALGVRDSKRLTDAVMLEMASE 154

Query: 75  ITS 77
           I  
Sbjct: 155 IER 157


>gi|91201202|emb|CAJ74262.1| unknown protein [Candidatus Kuenenia stuttgartiensis]
          Length = 319

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILD 49
          M  +AGIDE G G + GP+V++ + LD
Sbjct: 1  MTIIAGIDEAGYGPVLGPLVISVVALD 27


>gi|237734797|ref|ZP_04565278.1| ribonuclease HIII [Mollicutes bacterium D7]
 gi|229382125|gb|EEO32216.1| ribonuclease HIII [Coprobacillus sp. D7]
          Length = 262

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 23/153 (15%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAIIS 82
            G DE G G   GP+ V A  +D  +  +    G+ D K + +K+   + ++I    I S
Sbjct: 52  IGCDETGSGDFFGPLCVVACYVDERDFDWLVSIGVRDPKDMDNKELVRVAKEIKDRLIYS 111

Query: 83  ISSASHQYID---KHNIHKATLDA--IYHAVEN------LQVIPRSA--LIDGRSIPEDL 129
           +    + + +   K   + A + A     AV N      + +  +     +  ++    L
Sbjct: 112 LLILDNSHYNAMAKAGNNLANIKAKLYNQAVTNVMQKVSMPIKNKLVNQFVSPKTYYNYL 171

Query: 130 PCQAFAVI------KGDSISLSIAAASIIAKVT 156
             +   V       KG+   L+I  + I++K  
Sbjct: 172 KSEVIVVKDLTFVQKGEEKYLAIICSMILSKYA 204


>gi|167755828|ref|ZP_02427955.1| hypothetical protein CLORAM_01344 [Clostridium ramosum DSM 1402]
 gi|167704767|gb|EDS19346.1| hypothetical protein CLORAM_01344 [Clostridium ramosum DSM 1402]
          Length = 260

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 23/153 (15%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAIIS 82
            G DE G G   GP+ V A  +D  +  +    G+ D K + +K+   + ++I    I S
Sbjct: 50  IGCDETGSGDFFGPLCVVACYVDERDFDWLVSIGVRDPKDMDNKELVRVAKEIKDRLIYS 109

Query: 83  ISSASHQYID---KHNIHKATLDA--IYHAVEN------LQVIPRSA--LIDGRSIPEDL 129
           +    + + +   K   + A + A     AV N      + +  +     +  ++    L
Sbjct: 110 LLILDNSHYNAMAKAGNNLANIKAKLYNQAVTNVMQKVSMPIKNKLVNQFVSPKTYYNYL 169

Query: 130 PCQAFAVI------KGDSISLSIAAASIIAKVT 156
             +   V       KG+   L+I  + I++K  
Sbjct: 170 KSEVIVVKDLTFVQKGEEKYLAIICSMILSKYA 202


>gi|182413914|ref|YP_001818980.1| ribonuclease HIII [Opitutus terrae PB90-1]
 gi|177841128|gb|ACB75380.1| ribonuclease HIII [Opitutus terrae PB90-1]
          Length = 334

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 10/91 (10%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIIS 82
           AG+DE G+G   GPV+ A +I +   I      G+ DSKKI+  +  EL + I  +  + 
Sbjct: 107 AGLDESGKGDFFGPVIAATVIAEKPAIEAWRKAGVQDSKKIAETRIIELDKLIRETPGVV 166

Query: 83  I------SSASHQYIDKHNIHKATLDAIYHA 107
           +          ++ + +   +   L A  HA
Sbjct: 167 VRTCYCGMPKYNELMARPGANLNRLLAWQHA 197


>gi|108803638|ref|YP_643575.1| RNase HII [Rubrobacter xylanophilus DSM 9941]
 gi|108764881|gb|ABG03763.1| RNase HII [Rubrobacter xylanophilus DSM 9941]
          Length = 311

 Score = 47.8 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 27  AGIDEVGRGALAGPVVVAAIIL-----DPNNIPFGINDSKKISHKKREELYEKITSS 78
            GIDE G+G   GP+VVA + L     D      G+ DSK +  ++   L   +   
Sbjct: 92  IGIDEAGKGEYLGPLVVAGVRLSGAGDDLRLRELGVRDSKALGAERVRRLARAVVEE 148


>gi|126647908|ref|XP_001388063.1| hypothetical protein [Cryptosporidium parvum Iowa II]
 gi|126117151|gb|EAZ51251.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
          Length = 144

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 18/97 (18%)

Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK--YPDYGFDSHV--- 177
            +I   +        K D++  S++ ASI+AKV RD  +     +       F+ +    
Sbjct: 1   MNIFPGINITVKP--KADALFPSVSGASILAKVKRDDFLSNWWTQASVESCDFNGNKISN 58

Query: 178 -----GYP-TAKHQQVIKE-----KGPSCIHRLTFRP 203
                GYP   K +  ++       G   I R ++  
Sbjct: 59  YEQGSGYPGDPKTKDFLRRVFDPVFGFPNIVRFSWST 95


>gi|164655638|ref|XP_001728948.1| hypothetical protein MGL_3942 [Malassezia globosa CBS 7966]
 gi|159102836|gb|EDP41734.1| hypothetical protein MGL_3942 [Malassezia globosa CBS 7966]
          Length = 86

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 28 GIDEVGRGALAGPVVVAAIILDPN 51
          G+DE GRG + GP+V        +
Sbjct: 43 GVDEAGRGPVLGPLVYGIAYCPMD 66


>gi|321309630|ref|YP_004191959.1| ribonuclease HIII [Mycoplasma haemofelis str. Langford 1]
 gi|319801474|emb|CBY92120.1| ribonuclease HIII [Mycoplasma haemofelis str. Langford 1]
          Length = 232

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 61/196 (31%), Gaps = 47/196 (23%)

Query: 6   IPERPHFELEAMVREKNMWPVAGIDEVGRGALAG-PVVVAAII-------LDPNNIPFGI 57
           +   P +E E+           G DE G+G   G PV+    I       L        I
Sbjct: 1   MSFNPDWEKESY----------GSDESGKGDFFGGPVIAVVYINREIIETLKERGFYELI 50

Query: 58  NDSKKISHKKREELYEKITS-------------------SAII----SISSASHQYIDKH 94
            DSK+      E    +I                      A       + S  H  + K 
Sbjct: 51  KDSKQCKDSWIERAVPEIMEILGDFYEYRVFKPLEYNRAYAEYKNMNVLFSLWHDDLHKK 110

Query: 95  NIHKATLDAIY--HAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASII 152
              K  + A     A  +L    +  L  GR     L    F   KG+S  LS A AS+I
Sbjct: 111 ITAKLGIQAFRVMDAWTDLDKHHKYLLGVGRK---ALEVDDFC-TKGESKYLSCALASLI 166

Query: 153 AKVTRDRLMRIAHKKY 168
           A+    R M     ++
Sbjct: 167 ARYYYLRQMEEISIEF 182


>gi|328462259|gb|EGF34366.1| ribonuclease HII [Lactobacillus rhamnosus MTCC 5462]
          Length = 25

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKG 192
           YP Y F  ++GY T  H   +   G
Sbjct: 1   YPGYDFKDNMGYGTKAHLAGLAAHG 25


>gi|300175421|emb|CBK20732.2| unnamed protein product [Blastocystis hominis]
          Length = 174

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 12/88 (13%)

Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG----FDSHVGYPTAKHQQ 186
            +     K DS+   ++AASI+AK  RD ++     + P            GYP+     
Sbjct: 47  IKFKVAPKADSLYKCVSAASIVAKTHRDAIIEQHPWEEPCMQDRLIGKLGSGYPSDPMTV 106

Query: 187 VIKE------KG-PSCIHRLTFRPLRNL 207
              E       G P+ I R ++     +
Sbjct: 107 QFLESVMDPVFGFPTFI-RFSWSTASRM 133


>gi|323142207|ref|ZP_08077041.1| ribonuclease HIII [Phascolarctobacterium sp. YIT 12067]
 gi|322413270|gb|EFY04155.1| ribonuclease HIII [Phascolarctobacterium sp. YIT 12067]
          Length = 324

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 7/86 (8%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI 75
              +W  AG DE G+G   G +VVAA ++D          G+ D K ++ KK  EL   I
Sbjct: 110 SNGLW--AGSDESGKGDFFGSLVVAATVVDNTTAAKLQAAGVKDCKLLTDKKILELENVI 167

Query: 76  TSSAI-ISISSASHQYIDKHNIHKAT 100
            ++ +  S+     +  +      A 
Sbjct: 168 KATVVDYSVLELKPKIYNLRYEQVAA 193


>gi|224110154|ref|XP_002315431.1| predicted protein [Populus trichocarpa]
 gi|222864471|gb|EEF01602.1| predicted protein [Populus trichocarpa]
          Length = 305

 Score = 43.9 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 55/162 (33%), Gaps = 50/162 (30%)

Query: 27  AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK-KREEL-----------YEK 74
            GIDE GR                        D+  +    +R  L           +E 
Sbjct: 1   MGIDEAGRVP-----------------DLWCTDACTVLAHMRRLSLPSALQRKGRSDFEN 43

Query: 75  ITSSAIISIS---------SASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDG 122
           + ++  I  +         SA     +K N+++ + D+    V    N+ V+     +D 
Sbjct: 44  LKANESIGWAVDVNDPRELSAKMLKKNKINLNEISHDSASGLVNRVLNMGVLLTEVCVDT 103

Query: 123 RSIPEDLPCQ---AFAVIK------GDSISLSIAAASIIAKV 155
              PE    +   +F  +K        S+   ++ ASI+AKV
Sbjct: 104 VGDPEKYRIKLSESFPFVKFVVAKKAGSLYPVVSGASIVAKV 145


>gi|169350173|ref|ZP_02867111.1| hypothetical protein CLOSPI_00917 [Clostridium spiroforme DSM 1552]
 gi|169292956|gb|EDS75089.1| hypothetical protein CLOSPI_00917 [Clostridium spiroforme DSM 1552]
          Length = 259

 Score = 41.6 bits (97), Expect = 0.062,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 61/160 (38%), Gaps = 25/160 (15%)

Query: 22  NMWPV--AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI 75
           N   +   G DE G     GP+ V A  +D  +I       I D K++   +   +  +I
Sbjct: 41  NYQKISHIGCDETGSADFFGPLCVVACYVDERDIDWLVSLNIRDPKEMDVHELVRIAREI 100

Query: 76  TSSAIISISSASHQYID---KHNIHKATLDA--IYHAVEN----LQVIPRSALIDGRSIP 126
               I S+    + + +   K   + A + A     AV N    + +  ++ LI+    P
Sbjct: 101 KDRLIYSLLLLDNSHYNAMVKAGNNLANIKAKLYNQAVTNVMQKVGMPVKNKLINQFVSP 160

Query: 127 EDL--PCQAFAVI--------KGDSISLSIAAASIIAKVT 156
           +      +   ++        KG+   L+I  + I++K  
Sbjct: 161 KTYYNYLKHEVIVVKDLTFVQKGEEQYLAIVCSMILSKYA 200


>gi|13507857|ref|NP_109806.1| similarity with ribonuclease HII [Mycoplasma pneumoniae M129]
 gi|13959724|sp|P75446|Y118_MYCPN RecName: Full=Uncharacterized protein MG199 homolog
 gi|11379450|gb|AAG34735.1|AE000004_4 ribonuclease HII-like protein [Mycoplasma pneumoniae M129]
 gi|301633315|gb|ADK86869.1| ribonuclease HII [Mycoplasma pneumoniae FH]
          Length = 236

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77
           + G DE G+G   G + V+A+++  + I      G+ DSK+ +  + + L  KI +
Sbjct: 10 YLIGSDESGKGDSFGGIAVSAVLIHKDKINTLHQIGVGDSKQFNDYQIKALVPKIKA 66


>gi|327490667|gb|EGF22448.1| ribonuclease HIII [Streptococcus sanguinis SK1058]
          Length = 166

 Score = 40.4 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 20  EKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKI 75
            +N   + G DEVG G+  G + VVA+ +    +      G+ DSK ++  K  +L   +
Sbjct: 78  SQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDSKIRQLAPVL 136

Query: 76  TSSAII 81
               +I
Sbjct: 137 KEKLLI 142


>gi|325108602|ref|YP_004269670.1| hypothetical protein Plabr_2044 [Planctomyces brasiliensis DSM
          5305]
 gi|324968870|gb|ADY59648.1| hypothetical protein Plabr_2044 [Planctomyces brasiliensis DSM
          5305]
          Length = 323

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 22 NMWPVAGIDEVGRGALAGPVVVAAII 47
              V GIDE G G   GP+V+ A +
Sbjct: 3  GRRFVIGIDEAGYGPNIGPLVIGATV 28


>gi|168704572|ref|ZP_02736849.1| hypothetical protein GobsU_33859 [Gemmata obscuriglobus UQM 2246]
          Length = 313

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILD-PNNIPFGINDSKKISHKKREE 70
          M  V GIDE G G   GP+V AAI L  P + P G +  K +  +  E+
Sbjct: 1  MPWVVGIDEAGYGPNLGPLVQAAIALRLPESDPAGWDTLKSVVRRAHEK 49



 Score = 35.0 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 12/75 (16%)

Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI----AHKKYPDYGFDSHVGYPTAKHQ 185
           P       + D  S+++A AS++ K  R+  MR        + P  G     GYP    +
Sbjct: 233 PVTVVFRPRADGDSVAVALASMLCKYLREMCMRQFNRFWAARVP--GLAPTAGYPVDAKR 290

Query: 186 --QVI----KEKGPS 194
               I       G +
Sbjct: 291 FYAAIQPTMARLGLT 305


>gi|87306587|ref|ZP_01088734.1| hypothetical protein DSM3645_09647 [Blastopirellula marina DSM
          3645]
 gi|87290766|gb|EAQ82653.1| hypothetical protein DSM3645_09647 [Blastopirellula marina DSM
          3645]
          Length = 318

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 10/61 (16%)

Query: 23 MWPVAGIDEVGRGALAGPVVVAAII------LDPNNIPFGIND----SKKISHKKREELY 72
          M  + G+DE G G   GP+V+AA +      L  N++   + +    +K  S   R  + 
Sbjct: 1  MTWLIGVDEAGYGPNLGPLVIAATVWKAPDSLSGNDLYEALGEVVAVAKSSSRDTRLLIA 60

Query: 73 E 73
          +
Sbjct: 61 D 61


>gi|262167731|ref|ZP_06035433.1| hypothetical protein VIJ_000901 [Vibrio cholerae RC27]
 gi|262023796|gb|EEY42495.1| hypothetical protein VIJ_000901 [Vibrio cholerae RC27]
          Length = 43

 Score = 39.7 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 6  IPERPHFELEAMVREKNMWPVAGIDEVGRGA 36
          + ++P  EL           +AG+DEVGRG 
Sbjct: 1  MAKKPSIELPPFEIPAGYALIAGVDEVGRGP 31


>gi|325962490|ref|YP_004240396.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323468577|gb|ADX72262.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 798

 Score = 38.5 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 31/126 (24%)

Query: 33  GRGALAGP-VVVAAIILDPNNIPFGINDSKKISHKKREEL---YEKITSSAIISISSASH 88
           G GA  GP VVVAA+ LDP           + + + R  +     ++  +A +    A  
Sbjct: 475 GDGAGVGPEVVVAAV-LDP-----------QSNAECRPVVIGDALRLRQAADVLGIEADI 522

Query: 89  QYIDKHNIHKATLDAIYHAVENLQVIPRSA-LIDGRSIPEDLPCQAFAVIKGDSISLSIA 147
           Q I                VE+    P    +ID   +PEDLP    + + G +    I 
Sbjct: 523 QSI--------------RDVEDALFTPGRVNVIDLNLLPEDLPWGQLSPVAGHAAYEYIR 568

Query: 148 AASIIA 153
            AS +A
Sbjct: 569 VASELA 574


>gi|45356867|gb|AAS58472.1| ATP binding protein [Mycoplasma hyopneumoniae]
          Length = 1182

 Score = 38.1 bits (88), Expect = 0.68,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 25   PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI 75
             V G DEVG G     + V   +       N +   I DSK ++ KK  +L++ I
Sbjct: 1076 LVIGCDEVGVGEYFTNLTVCCAVFREKEIKNELLIQIVDSKLLTEKKISDLFQVI 1130


>gi|58699315|ref|ZP_00374097.1| conserved hypothetical protein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58534168|gb|EAL58385.1| conserved hypothetical protein [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 101

 Score = 38.1 bits (88), Expect = 0.75,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206
           ++ ++ R R M    ++  +   D+   Y   +H   I   G +  HR  F P+  
Sbjct: 49  VMKQIIRLRKMDDDDREEQEILLDT---Y--KQHLNAIGLYGITEHHRRNFAPISR 99


>gi|289808318|ref|ZP_06538947.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 37

 Score = 37.7 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 71  LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYH 106
           +Y++I   A+  S+  A    ID+ NI  AT+ A+  
Sbjct: 1   MYDEIKEKALSWSLGRAEAHEIDELNILHATMLAMQR 37


>gi|149178610|ref|ZP_01857196.1| hypothetical protein PM8797T_07342 [Planctomyces maris DSM 8797]
 gi|148842536|gb|EDL56913.1| hypothetical protein PM8797T_07342 [Planctomyces maris DSM 8797]
          Length = 320

 Score = 37.0 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 23 MWPVAGIDEVGRGALAGPVVVAA 45
          M  + G+DE G G   GP+V+ A
Sbjct: 1  MGLIIGMDEAGYGPNLGPLVITA 23


>gi|218905782|ref|YP_002453616.1| ribonuclease HII [Bacillus cereus AH820]
 gi|218537245|gb|ACK89643.1| ribonuclease HII [Bacillus cereus AH820]
          Length = 142

 Score = 36.6 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 44/121 (36%), Gaps = 21/121 (17%)

Query: 90  YIDKHNIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL-----------PCQA 133
            I +    K        A+ NL        P   LID  + P+                 
Sbjct: 1   MIKETTKGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENV 60

Query: 134 FAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189
           +   KG+S+ L++AAASI+A+ +     D L + A    P  G    V    AK  Q + 
Sbjct: 61  YFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGKQVDIAAAKLIQKLG 119

Query: 190 E 190
           +
Sbjct: 120 K 120


>gi|317765021|ref|NP_001187891.1| ribonuclease h2 subunit a [Ictalurus punctatus]
 gi|308324252|gb|ADO29261.1| ribonuclease h2 subunit a [Ictalurus punctatus]
          Length = 108

 Score = 36.6 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 17/106 (16%)

Query: 41  VVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS---------SA 86
           +V            N     + DSK +S  +RE L+ K+  +   +  +         S 
Sbjct: 1   MVYGICFCPVSRKENLKNLKVADSKTLSEAERENLFLKLDKAKGFVGWALQILSPNTIST 60

Query: 87  SHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPEDL 129
           S     K+N++  + DA    V+   +  V  +   +D     E  
Sbjct: 61  SMLQRAKYNLNALSHDAAIGLVQYALDCGVQLKEVFVDTVGPAEKY 106


>gi|116669596|ref|YP_830529.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Arthrobacter sp.
           FB24]
 gi|116609705|gb|ABK02429.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Arthrobacter sp.
           FB24]
          Length = 792

 Score = 36.6 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 31/126 (24%)

Query: 33  GRGALAGP-VVVAAIILDPNNIPFGINDSKKISHKKREEL---YEKITSSAIISISSASH 88
           G GA  GP VVVAA+ LDP           + + + R  +     ++  +A +    A  
Sbjct: 469 GDGAGVGPEVVVAAV-LDP-----------QSNKECRPVVIGDALRLRQAADVLGIEADI 516

Query: 89  QYIDKHNIHKATLDAIYHAVENLQVIPRSA-LIDGRSIPEDLPCQAFAVIKGDSISLSIA 147
             I+K              VE+    P    +ID   +PEDLP    + + G +    I 
Sbjct: 517 HTIEK--------------VEDAVFTPGRVNVIDLALLPEDLPWGQLSPVAGHAAYEYIR 562

Query: 148 AASIIA 153
            AS +A
Sbjct: 563 VASELA 568


>gi|327542095|gb|EGF28590.1| hypothetical protein RBWH47_03049 [Rhodopirellula baltica WH47]
          Length = 340

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)

Query: 23 MWPVAGIDEVGRGALAGPVVVAA 45
          M+ +A +DE G G   GP+V+AA
Sbjct: 1  MFLIA-VDEAGYGPKLGPLVIAA 22


>gi|32471580|ref|NP_864573.1| hypothetical protein RB1758 [Rhodopirellula baltica SH 1]
 gi|32443421|emb|CAD72254.1| hypothetical protein RB1758 [Rhodopirellula baltica SH 1]
          Length = 340

 Score = 35.8 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)

Query: 23 MWPVAGIDEVGRGALAGPVVVAA 45
          M+ +A +DE G G   GP+V+AA
Sbjct: 1  MFLIA-VDEAGYGPKLGPLVIAA 22


>gi|169597971|ref|XP_001792409.1| hypothetical protein SNOG_01781 [Phaeosphaeria nodorum SN15]
 gi|160707630|gb|EAT91430.2| hypothetical protein SNOG_01781 [Phaeosphaeria nodorum SN15]
          Length = 210

 Score = 35.8 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 33  GRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86
           GR  L G    +A+ L  +     +NDSK      R  + + + + A      A
Sbjct: 146 GREPLCG---ASAVRLPDDIPFPKLNDSKSADQIARAVVMKILKAWAKFFGGGA 196


>gi|238022509|ref|ZP_04602935.1| hypothetical protein GCWU000324_02417 [Kingella oralis ATCC 51147]
 gi|237867123|gb|EEP68165.1| hypothetical protein GCWU000324_02417 [Kingella oralis ATCC 51147]
          Length = 186

 Score = 35.4 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 141 SISLSIAAASIIAKVTRD---RLMRIAHKKYPDYGFD 174
            +S S+A A+I+A V R+     +R     YPDY FD
Sbjct: 12  DLSASVANAAILAHVARELPEAEIRRLDALYPDYQFD 48


>gi|212634060|ref|YP_002310585.1| carbamoyl phosphate synthase large subunit [Shewanella
           piezotolerans WP3]
 gi|212555544|gb|ACJ27998.1| Carbamoyl-phosphate synthase, large subunit [Shewanella
           piezotolerans WP3]
          Length = 1073

 Score = 35.4 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 64/172 (37%), Gaps = 22/172 (12%)

Query: 38  AGPVVVA-AIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNI 96
           AGP+V+  A          G    K +    REE Y  I  ++  +      +  D   I
Sbjct: 15  AGPIVIGQAC----EFDYSGAQACKAL----REEGYRVILVNSNPATIMTDPEMADATYI 66

Query: 97  HKATLDAIYHAVENLQVIPRSALID---GRSIPEDLPCQAFAVIKGDSISLSIAAASIIA 153
                + + + +   +  P + L       ++   L  ++  V+K  ++ +  A A  I 
Sbjct: 67  EPIHWEVVRNIIA--KERPDAILPTMGGQTALNCALELESRGVLKEFNVDMIGATADAID 124

Query: 154 KVT----RDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201
           K       D+ M+    + P  G   ++     + + V+ E G  CI R +F
Sbjct: 125 KAEDRSRFDKAMKSIGLECPRAGIAHNM----DEARAVLAEVGYPCIIRPSF 172


>gi|268602234|ref|ZP_06136401.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID18]
 gi|268586365|gb|EEZ51041.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID18]
          Length = 357

 Score = 35.0 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 19/100 (19%)

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K +S  +R EL + I     I+        +    + +A +DA     +           
Sbjct: 160 KNLSPTQRRELADNI-----IAEKVRQQAVMQNSRVSEAEIDAFLEQAQK---------- 204

Query: 121 DGRSIPEDLPCQAFA----VIKGDSISLSIAAASIIAKVT 156
            G ++PE  P + +     +IK DS + ++ A S I K+ 
Sbjct: 205 QGITLPEGAPLRQYRAQHILIKADSKNAAVGAESTIRKIY 244


>gi|59802035|ref|YP_208747.1| putative cis-trans isomerase [Neisseria gonorrhoeae FA 1090]
 gi|59718930|gb|AAW90335.1| putative cis-trans isomerase [Neisseria gonorrhoeae FA 1090]
          Length = 333

 Score = 35.0 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 19/100 (19%)

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K +S  +R EL + I     I+        +    + +A +DA     +           
Sbjct: 136 KNLSPTQRRELADNI-----IAEKVRQQAVMQNSRVSEAEIDAFLEQAQK---------- 180

Query: 121 DGRSIPEDLPCQAFA----VIKGDSISLSIAAASIIAKVT 156
            G ++PE  P + +     +IK DS + ++ A S I K+ 
Sbjct: 181 QGITLPEGAPLRQYRAQHILIKADSKNAAVGAESTIRKIY 220


>gi|239999806|ref|ZP_04719730.1| putative cis-trans isomerase [Neisseria gonorrhoeae 35/02]
 gi|240014962|ref|ZP_04721875.1| putative cis-trans isomerase [Neisseria gonorrhoeae DGI18]
 gi|240017410|ref|ZP_04723950.1| putative cis-trans isomerase [Neisseria gonorrhoeae FA6140]
 gi|240116565|ref|ZP_04730627.1| putative cis-trans isomerase [Neisseria gonorrhoeae PID18]
 gi|240122031|ref|ZP_04734993.1| putative cis-trans isomerase [Neisseria gonorrhoeae PID24-1]
          Length = 332

 Score = 35.0 bits (80), Expect = 7.2,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 19/100 (19%)

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K +S  +R EL + I     I+        +    + +A +DA     +           
Sbjct: 135 KNLSPTQRRELADNI-----IAEKVRQQAVMQNSRVSEAEIDAFLEQAQK---------- 179

Query: 121 DGRSIPEDLPCQAFA----VIKGDSISLSIAAASIIAKVT 156
            G ++PE  P + +     +IK DS + ++ A S I K+ 
Sbjct: 180 QGITLPEGAPLRQYRAQHILIKADSKNAAVGAESTIRKIY 219


>gi|195433004|ref|XP_002064505.1| GK23787 [Drosophila willistoni]
 gi|194160590|gb|EDW75491.1| GK23787 [Drosophila willistoni]
          Length = 639

 Score = 35.0 bits (80), Expect = 7.2,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 22/150 (14%)

Query: 61  KKISHKKREELYEKI----TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116
           K+   + R  L E++       A++ I   S   + +             A     ++P 
Sbjct: 376 KRTKAEHRARLRERLSALTKGVAVLHIGGQSEVEVSEKKDRVIDALNSTRAAIEEGIVPG 435

Query: 117 SALIDGRSIP--EDLPCQAFAVIKGDSI--------SLSIA------AASIIAKVTRDRL 160
                 R IP  E L   +  + +G +I         ++IA      AAS++AKV   + 
Sbjct: 436 GGTAFLRCIPQLESLVPGSQDLQQGINIVRNALRMPCMTIARNAGVDAASVVAKVMNRKD 495

Query: 161 MRIAHKKYPDYGFDSHVGY--PTAKHQQVI 188
                    +YG     G   PT   +  I
Sbjct: 496 DYGYDAFRDEYGMLYDKGIIDPTKVMRTAI 525


>gi|194099607|ref|YP_002002738.1| putative cis-trans isomerase [Neisseria gonorrhoeae NCCP11945]
 gi|268595616|ref|ZP_06129783.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 35/02]
 gi|293398076|ref|ZP_06642281.1| peptidyl-prolyl cis-trans isomerase SurA [Neisseria gonorrhoeae
           F62]
 gi|193934897|gb|ACF30721.1| putative cis-trans isomerase [Neisseria gonorrhoeae NCCP11945]
 gi|268549005|gb|EEZ44423.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 35/02]
 gi|291611339|gb|EFF40409.1| peptidyl-prolyl cis-trans isomerase SurA [Neisseria gonorrhoeae
           F62]
 gi|317165096|gb|ADV08637.1| putative cis-trans isomerase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 333

 Score = 35.0 bits (80), Expect = 7.2,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 19/100 (19%)

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           K +S  +R EL + I     I+        +    + +A +DA     +           
Sbjct: 136 KNLSPTQRRELADNI-----IAEKVRQQAVMQNSRVSEAEIDAFLEQAQK---------- 180

Query: 121 DGRSIPEDLPCQAFA----VIKGDSISLSIAAASIIAKVT 156
            G ++PE  P + +     +IK DS + ++ A S I K+ 
Sbjct: 181 QGITLPEGAPLRQYRAQHILIKADSKNAAVGAESTIRKIY 220


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.316    0.175    0.602 

Lambda     K      H
   0.267   0.0537    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,785,512,109
Number of Sequences: 14124377
Number of extensions: 243605656
Number of successful extensions: 584395
Number of sequences better than 10.0: 3128
Number of HSP's better than 10.0 without gapping: 5213
Number of HSP's successfully gapped in prelim test: 848
Number of HSP's that attempted gapping in prelim test: 568139
Number of HSP's gapped (non-prelim): 6431
length of query: 209
length of database: 4,842,793,630
effective HSP length: 133
effective length of query: 76
effective length of database: 2,964,251,489
effective search space: 225283113164
effective search space used: 225283113164
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 79 (34.6 bits)