BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781076|ref|YP_003065489.1| ribonuclease HII [Candidatus Liberibacter asiaticus str. psy62] (209 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254781076|ref|YP_003065489.1| ribonuclease HII [Candidatus Liberibacter asiaticus str. psy62] gi|254040753|gb|ACT57549.1| ribonuclease HII [Candidatus Liberibacter asiaticus str. psy62] Length = 209 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 209/209 (100%), Positives = 209/209 (100%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS Sbjct: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI Sbjct: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP Sbjct: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209 TAKHQQVIKEKGPSCIHRLTFRPLRNLSV Sbjct: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209 >gi|315122464|ref|YP_004062953.1| ribonuclease HII [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495866|gb|ADR52465.1| ribonuclease HII [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 209 Score = 315 bits (807), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 158/200 (79%), Positives = 181/200 (90%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E+P+FE E MVR+K MWPVAGIDEVGRGALAG VVVAAIILDPNNIP GINDSKKI KK Sbjct: 8 EKPNFEFEIMVRQKKMWPVAGIDEVGRGALAGSVVVAAIILDPNNIPPGINDSKKIPPKK 67 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 RE LYEKI +SAI+SI+SA ++YID+HNIHKATLD +Y A+ NL++ PRS LIDGRSIPE Sbjct: 68 REYLYEKIINSAIVSIASAGNRYIDQHNIHKATLDTMYRAINNLKITPRSVLIDGRSIPE 127 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +LPCQAFA+IKGDS SLSIAAASI+AKVTRDRLM++AHKKYPDYGFDSHVGYPT KH+Q Sbjct: 128 NLPCQAFAIIKGDSSSLSIAAASIVAKVTRDRLMKMAHKKYPDYGFDSHVGYPTVKHRQA 187 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 IKEKGPS IHR++FRPL++L Sbjct: 188 IKEKGPSRIHRMSFRPLKDL 207 >gi|227821031|ref|YP_002825001.1| ribonuclease HII [Sinorhizobium fredii NGR234] gi|254807983|sp|C3MHC0|RNH2_RHISN RecName: Full=Ribonuclease HII; Short=RNase HII gi|227340030|gb|ACP24248.1| ribonuclease HII [Sinorhizobium fredii NGR234] Length = 231 Score = 223 bits (569), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 103/200 (51%), Positives = 139/200 (69%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 P P F E + WPVAG DE GRG LAGPVV AA+ILDP+ +P G+NDSK ++ + Sbjct: 16 PVLPDFSFEITAKRDGFWPVAGADEAGRGPLAGPVVAAAVILDPDAVPGGLNDSKLLTAE 75 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 +RE L+ +I ++A +SI+S+S +ID +I KA+LDA+ A++ L + R ALIDGR +P Sbjct: 76 QREALFTEIMATATVSIASSSAAHIDATDILKASLDAMRRAIDGLSIAARFALIDGRDVP 135 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + LPC A A++KGDS S+SIAAASI+AKVTRDR+M A +P YGF H GY T +H+ Sbjct: 136 QGLPCHAKAIVKGDSRSVSIAAASIVAKVTRDRMMARADATFPAYGFALHAGYATVRHRS 195 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I GP +HR++FRP R Sbjct: 196 AIDSHGPCSLHRMSFRPFRE 215 >gi|241203307|ref|YP_002974403.1| ribonuclease HII [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857197|gb|ACS54864.1| Ribonuclease H [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 229 Score = 223 bits (568), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 107/206 (51%), Positives = 145/206 (70%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 + ++ P P F LE R+ WPVAG DE GRG LAGPVV AA+ILDP IP G+NDS Sbjct: 11 LLFDTAPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPRRIPEGLNDS 70 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K++S ++REEL+ +I ++A +SI+S+S ID+ +I KA+LDA+ A+ +L + L Sbjct: 71 KQLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAIPASYVLT 130 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG +P L C AV+KGD+ S+SIAAASI+AKVTRDR+M AH +PDYGF +HVGY Sbjct: 131 DGLDVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMARAHSVFPDYGFAAHVGYG 190 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206 TA+H+ I+ GP +HR++FRPLR Sbjct: 191 TAQHRAGIERHGPCSLHRMSFRPLRK 216 >gi|86356514|ref|YP_468406.1| ribonuclease HII [Rhizobium etli CFN 42] gi|123512870|sp|Q2KBV7|RNH2_RHIEC RecName: Full=Ribonuclease HII; Short=RNase HII gi|86280616|gb|ABC89679.1| ribonuclease HII protein [Rhizobium etli CFN 42] Length = 229 Score = 223 bits (568), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 106/206 (51%), Positives = 147/206 (71%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 + +++P P F+LE R+ WPVAG DE GRG LAGPVV AA+ILDP IP G+NDS Sbjct: 11 LLFDTVPLVPDFKLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDS 70 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K++S ++REEL+ +I ++A +SI+S+S ID+ +I KA+LDA+ A+ +L + L Sbjct: 71 KQLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAIPASYVLT 130 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG +P L C AV+KGD+ S+SIAAASI+AKVTRDR+M AH +PDYGF +H GY Sbjct: 131 DGLDVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMARAHNVFPDYGFAAHAGYG 190 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206 TA+H+ I++ GP +HR++FRPLR Sbjct: 191 TAQHRAGIEKHGPCSLHRMSFRPLRK 216 >gi|209548122|ref|YP_002280039.1| ribonuclease HII [Rhizobium leguminosarum bv. trifolii WSM2304] gi|238056781|sp|B5ZS20|RNH2_RHILW RecName: Full=Ribonuclease HII; Short=RNase HII gi|209533878|gb|ACI53813.1| Ribonuclease H [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 229 Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 108/204 (52%), Positives = 146/204 (71%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 ++P P F LE R+ WPVAG DE GRG LAGPVV AA+ILDP IP G+NDSK++ Sbjct: 14 QAVPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDSKQL 73 Query: 64 SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 S ++REEL+ +I ++A +SI+S+S ID+ +I KA+LDA+ A+ +L + L DG Sbjct: 74 SAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAIPASYVLTDGL 133 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P L C AVIKGD+ S+SIAAASI+AKVTRDR+M AH +PDYGF +HVGY TA+ Sbjct: 134 DVPPGLDCPGQAVIKGDARSVSIAAASIVAKVTRDRMMARAHHVFPDYGFAAHVGYGTAQ 193 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H+ I++ GP +HR++FRPLR + Sbjct: 194 HRAGIEKLGPCSLHRMSFRPLRKV 217 >gi|116250704|ref|YP_766542.1| ribonuclease HII [Rhizobium leguminosarum bv. viciae 3841] gi|166226643|sp|Q1MKS7|RNH2_RHIL3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|115255352|emb|CAK06427.1| putative ribonuclease HII [Rhizobium leguminosarum bv. viciae 3841] Length = 229 Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 107/206 (51%), Positives = 145/206 (70%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 + ++ P P F LE R+ WPVAG DE GRG LAGPVV AA+ILDP IP G+NDS Sbjct: 11 LLFDTAPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDS 70 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K++S ++REEL+ +I ++A +SI+S+S ID+ +I KA+LDA+ A+ +L + L Sbjct: 71 KQLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAIPASYVLT 130 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG +P L C AV+KGD+ S+SIAAASI+AKVTRDR+M AH +PDYGF +HVGY Sbjct: 131 DGLDVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMARAHSVFPDYGFAAHVGYG 190 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206 TA+H+ I+ GP +HR++FRPLR Sbjct: 191 TAQHRAGIERHGPCSLHRMSFRPLRK 216 >gi|190890579|ref|YP_001977121.1| ribonuclease HII protein [Rhizobium etli CIAT 652] gi|238692497|sp|B3PRG0|RNH2_RHIE6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|190695858|gb|ACE89943.1| ribonuclease HII protein [Rhizobium etli CIAT 652] Length = 229 Score = 222 bits (566), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 107/206 (51%), Positives = 145/206 (70%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 + ++ P P F LE R+ WPVAG DE GRG LAGPVV AA+ILDP IP G+NDS Sbjct: 11 LLFDTAPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDS 70 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K++S ++REEL+ +I ++A +SI+S+S ID+ +I KA+LDA+ A+ +L V L Sbjct: 71 KQLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAVPASYVLT 130 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG +P L C AV+KGD+ S+SIAAASI+AKVTRDR+M AH +PDYGF +H GY Sbjct: 131 DGLDVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMARAHNVFPDYGFAAHAGYG 190 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206 TA+H+ I++ GP +HR++FRPLR Sbjct: 191 TAQHRTGIEKHGPCSLHRMSFRPLRK 216 >gi|327190563|gb|EGE57656.1| ribonuclease HII protein [Rhizobium etli CNPAF512] Length = 229 Score = 222 bits (565), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 107/206 (51%), Positives = 145/206 (70%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 + ++ P P F LE R+ WPVAG DE GRG LAGPVV AA+ILDP IP G+NDS Sbjct: 11 LLFDTAPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDS 70 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K++S ++REEL+ +I ++A +SI+S+S ID+ +I KA+LDA+ A+ +L V L Sbjct: 71 KQLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAVPASYVLT 130 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG +P L C AV+KGD+ S+SIAAASI+AKVTRDR+M AH +PDYGF +H GY Sbjct: 131 DGLDVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMARAHNVFPDYGFAAHAGYG 190 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206 TA+H+ I++ GP +HR++FRPLR Sbjct: 191 TAQHRAGIEKHGPCSLHRMSFRPLRK 216 >gi|222147705|ref|YP_002548662.1| ribonuclease HII [Agrobacterium vitis S4] gi|221734693|gb|ACM35656.1| ribonuclease HII [Agrobacterium vitis S4] Length = 279 Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 105/196 (53%), Positives = 135/196 (68%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F LE + K WPVAG DE GRG LAGPVV AA+ILDP+ IP G+NDSKK++ KRE Sbjct: 79 PDFSLEESFKAKGCWPVAGTDEAGRGPLAGPVVAAAVILDPDAIPDGLNDSKKLTAAKRE 138 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ +I ++A +SI+S+ +ID+ +I KA+LDA+ A L + P L DGR +P L Sbjct: 139 ALFIQILATATVSIASSGSDHIDRRDIRKASLDAMRRAAAGLSLAPAHLLCDGRDVPPGL 198 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C AVIKGD+ SLSIAAASI+AKV RDR+M A +P YGFD+H GY T HQ+ I Sbjct: 199 ICGGTAVIKGDARSLSIAAASIVAKVMRDRMMTRAALVFPQYGFDAHAGYGTKVHQKAIA 258 Query: 190 EKGPSCIHRLTFRPLR 205 + GP +HR++F PLR Sbjct: 259 DHGPCPLHRMSFSPLR 274 >gi|159184435|ref|NP_353745.2| ribonuclease HII [Agrobacterium tumefaciens str. C58] gi|39932435|sp|Q8UHG2|RNH2_AGRT5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|159139748|gb|AAK86530.2| ribonuclease HII [Agrobacterium tumefaciens str. C58] Length = 217 Score = 217 bits (553), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 105/197 (53%), Positives = 138/197 (70%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E ++K WPVAG DE GRG LAGPVV AA+ILDP+NIP G++DSKK++ +KRE Sbjct: 20 PDFAFELEAKKKGFWPVAGTDEAGRGPLAGPVVAAAVILDPDNIPKGMDDSKKLTRQKRE 79 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ +I ++I+S++S+ ID NI +A+LDA+ AV L++ P L DGR P + Sbjct: 80 SLFVQIMETSIVSVASSGPGLIDSVNILRASLDAMRRAVLGLEIPPALVLADGRDRPPGI 139 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 PC+A AVIKGDS SLSIAAASIIAKVTRDR+M A + YGF+ H GY T H + I+ Sbjct: 140 PCEAKAVIKGDSRSLSIAAASIIAKVTRDRMMERAGVVHTSYGFEGHAGYGTPAHLRAIE 199 Query: 190 EKGPSCIHRLTFRPLRN 206 GP +HR++FRPL+ Sbjct: 200 SHGPCALHRMSFRPLKR 216 >gi|325292105|ref|YP_004277969.1| Ribonuclease HII [Agrobacterium sp. H13-3] gi|325059958|gb|ADY63649.1| Ribonuclease HII [Agrobacterium sp. H13-3] Length = 224 Score = 214 bits (546), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 104/197 (52%), Positives = 137/197 (69%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E R+K +WPVAG DE GRG LAGPVV AA+ILDP+NIP G++DSKK++ KRE Sbjct: 27 PDFSFELEARKKGLWPVAGTDEAGRGPLAGPVVAAAVILDPDNIPGGLDDSKKLTKLKRE 86 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ +I ++I+S++S+ ID NI +A+LDA+ AV L++ P L DGR P + Sbjct: 87 SLFLQIMETSIVSVASSGPGLIDTMNILRASLDAMRRAVLGLEISPALVLADGRDKPPGI 146 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C++ AVIKGDS SLSIAAASIIAKVTRDR+M A + YGF+ H GY T H + I+ Sbjct: 147 TCESKAVIKGDSRSLSIAAASIIAKVTRDRMMERAGVVHSSYGFEGHAGYGTPAHLRAIE 206 Query: 190 EKGPSCIHRLTFRPLRN 206 GP +HR++FRPL+ Sbjct: 207 SHGPCPLHRMSFRPLKQ 223 >gi|222085047|ref|YP_002543576.1| ribonuclease HII protein [Agrobacterium radiobacter K84] gi|221722495|gb|ACM25651.1| ribonuclease HII protein [Agrobacterium radiobacter K84] Length = 218 Score = 212 bits (539), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 105/206 (50%), Positives = 139/206 (67%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 M + P P FELE + R WPVAG DE GRG LAGPVV AA+ILDP IP G+NDS Sbjct: 10 MLFDEGPIVPTFELELIARRAGHWPVAGADEAGRGPLAGPVVAAAVILDPERIPQGLNDS 69 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K++S +RE L+ +I ++A +SI+S+S ID +I KA+LDA+ A+ +L + L Sbjct: 70 KQLSAARREALFAEILATATVSIASSSAGRIDVTDIRKASLDAMRRAICSLAMPASYVLT 129 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG +P L C AV+KGD+ S SIAAASI+AKVTRDR+M A +P YGF +H GY Sbjct: 130 DGLDVPAGLACPGKAVVKGDARSFSIAAASIVAKVTRDRMMARAGIVFPAYGFAAHAGYG 189 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206 TA+H+ I++ GP +HR++FRPLR Sbjct: 190 TAQHRAGIEKHGPCSLHRMSFRPLRR 215 >gi|163761011|ref|ZP_02168089.1| putative ribonuclease HII [Hoeflea phototrophica DFL-43] gi|162281792|gb|EDQ32085.1| putative ribonuclease HII [Hoeflea phototrophica DFL-43] Length = 221 Score = 210 bits (535), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 109/199 (54%), Positives = 138/199 (69%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 P P E + + PVAG+DE GRG LAGPVV AA+ILDP IP G+NDSK +S K Sbjct: 21 PASPDDRFERHFSKDGLLPVAGLDEAGRGPLAGPVVAAAVILDPARIPEGLNDSKALSRK 80 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 KRE L+++I ++A++SI+SAS + ID +I KA+L A+ A+ L V ALIDGR IP Sbjct: 81 KRETLFDQIIATAMVSIASASPREIDVTDIRKASLTAMRRALIALPVRAGYALIDGRDIP 140 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 L C A++KGD+ SLSIAAASI+AKV RDR+M A YP YGFDSH GY +AKH Sbjct: 141 PGLTCPGRALVKGDARSLSIAAASIVAKVMRDRMMMRAAILYPVYGFDSHKGYGSAKHLA 200 Query: 187 VIKEKGPSCIHRLTFRPLR 205 I+E GP +HR++FRPLR Sbjct: 201 AIREHGPCPLHRMSFRPLR 219 >gi|150395676|ref|YP_001326143.1| ribonuclease HII [Sinorhizobium medicae WSM419] gi|166226656|sp|A6U6M8|RNH2_SINMW RecName: Full=Ribonuclease HII; Short=RNase HII gi|150027191|gb|ABR59308.1| Ribonuclease H [Sinorhizobium medicae WSM419] Length = 216 Score = 209 bits (533), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 105/201 (52%), Positives = 139/201 (69%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 P P F E + +WPVAG DE GRG LAGPVV AA+IL+P+ IP G+NDSK ++ + Sbjct: 16 PPVPDFAFERAAQRDGLWPVAGADEAGRGPLAGPVVAAAVILNPDAIPTGLNDSKLLTAE 75 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 +RE L+E+I ++A +SI+S+S ID +I KA+LDA+ AV L+V R L+DGR +P Sbjct: 76 QRETLFEEILATATVSIASSSSARIDTTDILKASLDAMRRAVHGLEVAARIVLVDGRDVP 135 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 L C A A++KGDS S+SIAAASI+AKVTRDR+M A +P YGF H GY T KH+ Sbjct: 136 PGLSCHAKAIVKGDSRSVSIAAASIVAKVTRDRMMARADATFPLYGFAHHAGYATVKHRT 195 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I+ GP +HR++FRP R L Sbjct: 196 AIESHGPCSLHRMSFRPFRQL 216 >gi|304393450|ref|ZP_07375378.1| ribonuclease HII [Ahrensia sp. R2A130] gi|303294457|gb|EFL88829.1| ribonuclease HII [Ahrensia sp. R2A130] Length = 208 Score = 208 bits (530), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 98/198 (49%), Positives = 136/198 (68%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P F LE + K + V G+DE GRG LAGPV+ AA+ILDP+NIP G+NDSK ++ K+R Sbjct: 5 QPDFTLETLALSKGIKNVCGVDEAGRGPLAGPVIAAAVILDPDNIPSGLNDSKALTEKRR 64 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 EL++ I +++ ++ ++ + ID NI A+L A+ +V L V ALIDG ++P + Sbjct: 65 SELFDAILATSQVAFATVAAGRIDAMNIRAASLYAMEQSVRALPVCANHALIDGNALPPN 124 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 +PC A A++KGD+ SLSIAAASIIAKV RDR+M A +P YGF H GYPTA H+ + Sbjct: 125 MPCSAEAIVKGDARSLSIAAASIIAKVMRDRIMVRADTLWPQYGFSGHKGYPTAAHRDAL 184 Query: 189 KEKGPSCIHRLTFRPLRN 206 GP IHR++FRP+RN Sbjct: 185 ARLGPCQIHRMSFRPVRN 202 >gi|218509940|ref|ZP_03507818.1| ribonuclease HII [Rhizobium etli Brasil 5] Length = 221 Score = 207 bits (527), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 100/182 (54%), Positives = 134/182 (73%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 PVAG DE GRG LAGPVV AA+ILDP IP G+NDSK++S ++REEL+ +I ++A +SI+ Sbjct: 27 PVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDSKQLSAQRREELFVQILATATVSIA 86 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S+S ID+ +I KA+LDA+ A+ +L V L DG +P L C AV+KGD+ S+ Sbjct: 87 SSSSTRIDETDIRKASLDAMRRAICSLAVPASYVLTDGLDVPPGLACPGQAVVKGDARSV 146 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASI+AKVTRDR+M AH +PDYGF +H GY TA+H+ I++ GP +HR++FRPL Sbjct: 147 SIAAASIVAKVTRDRMMARAHNVFPDYGFAAHAGYGTAQHRAGIEKHGPCSLHRMSFRPL 206 Query: 205 RN 206 R Sbjct: 207 RK 208 >gi|319403915|emb|CBI77503.1| Ribonuclease HII [Bartonella rochalimae ATCC BAA-1498] Length = 223 Score = 205 bits (522), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 105/202 (51%), Positives = 142/202 (70%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 +P +P+F E +++K + +AG+DEVGRG LAGPVV AA+ILD + IP G+NDSKK+S Sbjct: 15 VPFQPNFSYELDLQKKGFFYIAGVDEVGRGPLAGPVVTAAVILDKDRIPEGLNDSKKLSS 74 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 ++R LY +I +A+ IS++S + IDK NI KATL+A+ H + L + ALIDGR Sbjct: 75 QQRNRLYYEILRNALAISVASLCARTIDKSNIRKATLEAMRHCITGLAISAHYALIDGRD 134 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IP DLPC A A+IKGD S+SIAAASIIAKV RDR+M+ A + Y +YG + HVGY T H Sbjct: 135 IPFDLPCPAVALIKGDQSSVSIAAASIIAKVIRDRMMQYAGRIYQNYGLEKHVGYGTVAH 194 Query: 185 QQVIKEKGPSC-IHRLTFRPLR 205 + I + GP +HR +F PL+ Sbjct: 195 RAAIDKYGPIVRLHRYSFSPLK 216 >gi|15964592|ref|NP_384945.1| ribonuclease HII [Sinorhizobium meliloti 1021] gi|307309338|ref|ZP_07589001.1| Ribonuclease H [Sinorhizobium meliloti BL225C] gi|307320074|ref|ZP_07599495.1| Ribonuclease H [Sinorhizobium meliloti AK83] gi|39932445|sp|Q92RM4|RNH2_RHIME RecName: Full=Ribonuclease HII; Short=RNase HII gi|15073770|emb|CAC45411.1| Probable ribonuclease HII protein [Sinorhizobium meliloti 1021] gi|306894289|gb|EFN25054.1| Ribonuclease H [Sinorhizobium meliloti AK83] gi|306900207|gb|EFN30825.1| Ribonuclease H [Sinorhizobium meliloti BL225C] Length = 216 Score = 203 bits (517), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 102/198 (51%), Positives = 136/198 (68%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E WPVAG DE GRG LAGPVV AA+ILDP+ IP G+NDSK ++ ++RE Sbjct: 19 PDFTFERAAHRDGFWPVAGADEAGRGPLAGPVVAAAVILDPDAIPAGLNDSKLLTAEQRE 78 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+E+I +++ +SI+S+S ID +I KA+LDA+ AV L++ R L+DGR +P L Sbjct: 79 ALFEEILATSTVSIASSSSARIDTTDILKASLDAMRRAVHGLELAARIVLVDGRDVPPGL 138 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C A A++KGDS S+SIAAASI+AKVTRDR+M A +P YGF H GY T KH+ I+ Sbjct: 139 SCHAKAIVKGDSRSVSIAAASIVAKVTRDRMMARADATFPLYGFAHHAGYATVKHRTAIE 198 Query: 190 EKGPSCIHRLTFRPLRNL 207 GP +HR++FRP R + Sbjct: 199 SHGPCSLHRMSFRPFRQV 216 >gi|319406927|emb|CBI80564.1| Ribonuclease HII [Bartonella sp. 1-1C] Length = 212 Score = 202 bits (513), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 104/207 (50%), Positives = 144/207 (69%), Gaps = 4/207 (1%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 MF S+ +P+F E +++K + +AG+DEVGRG LAGPVV AA++LD + IP G+NDS Sbjct: 1 MFNVSL--QPNFSYELDLQKKGFFYIAGVDEVGRGPLAGPVVTAAVVLDKDRIPEGLNDS 58 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK+S ++R LY +I +A+ +S++S + IDK NI KATL+A+ H + L + AL Sbjct: 59 KKLSSQQRNRLYYEILRNALAVSVASLCARTIDKSNIRKATLEAMRHCITGLAISAHYAL 118 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 IDGR IP +LPC A A+IKGD S+SIAAASIIAKV RDR+M+ A + Y +YG + HVGY Sbjct: 119 IDGRDIPSNLPCPAVALIKGDQSSVSIAAASIIAKVIRDRMMQYAGRVYQNYGLEKHVGY 178 Query: 180 PTAKHQQVIKEKGPSC-IHRLTFRPLR 205 T H+ I + GP +HR +F PL+ Sbjct: 179 GTVAHRAAIDKYGPIVRLHRYSFSPLK 205 >gi|319898589|ref|YP_004158682.1| Ribonuclease HII [Bartonella clarridgeiae 73] gi|319402553|emb|CBI76098.1| Ribonuclease HII [Bartonella clarridgeiae 73] Length = 212 Score = 201 bits (512), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 103/207 (49%), Positives = 146/207 (70%), Gaps = 4/207 (1%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 MF ++P +P+F E +++K + +AG+DEVGRG LAGPVV AA++LD + IP G+NDS Sbjct: 1 MF--NVPFQPNFSYELDLQKKGFFYIAGVDEVGRGPLAGPVVTAAVVLDKDCIPEGVNDS 58 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK+S ++R +LY +I +A+ IS++S + IDK +I KATL+A+ + L + AL Sbjct: 59 KKLSSQQRNKLYYEILQNALAISVASICARTIDKSDIRKATLEAMRRCISGLAISAHYAL 118 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 IDGR +P +LPC A A+IKGD S+SIAAASIIAKV RDR+M+ A + Y +YG + HVGY Sbjct: 119 IDGRDVPPNLPCPAIALIKGDQSSVSIAAASIIAKVMRDRMMQYAGQVYQNYGLEKHVGY 178 Query: 180 PTAKHQQVIKEKGPSC-IHRLTFRPLR 205 TA H+ I + GP +HR +F PL+ Sbjct: 179 ATAAHRAAIDKYGPIVRLHRYSFSPLK 205 >gi|49473986|ref|YP_032028.1| ribonuclease HII [Bartonella quintana str. Toulouse] gi|81647195|sp|Q6G0E6|RNH2_BARQU RecName: Full=Ribonuclease HII; Short=RNase HII gi|49239489|emb|CAF25842.1| Ribonuclease HII [Bartonella quintana str. Toulouse] Length = 223 Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 102/204 (50%), Positives = 144/204 (70%), Gaps = 2/204 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 ++P +P+F E ++++ + +AG+DEVGRG LAGPVV AA+ILD +++P G+NDSKK+S Sbjct: 13 NLPLKPNFSCELDLQKQGFFHIAGVDEVGRGPLAGPVVTAAVILDKDHVPDGLNDSKKLS 72 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 ++R ELY +I SA+ +SI+S + ID+ +I KATL+A+ V L + ALIDGR Sbjct: 73 AQRRNELYCEILQSALAVSIASLCARTIDQSDIRKATLEAMRRCVTGLAIPAHYALIDGR 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 IP LPC A A+IKGD S+SIAAASIIAKVTRDR+M+ A + Y +YG + HVGY T Sbjct: 133 DIPFQLPCPATALIKGDQHSVSIAAASIIAKVTRDRMMKCAGQIYKNYGLEKHVGYATLA 192 Query: 184 HQQVIKEKGPSC-IHRLTFRPLRN 206 H+ + + GP +HR +F PL+ Sbjct: 193 HRIALDKYGPVVGLHRYSFAPLKG 216 >gi|319405354|emb|CBI78971.1| Ribonuclease HII [Bartonella sp. AR 15-3] Length = 212 Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 104/207 (50%), Positives = 143/207 (69%), Gaps = 4/207 (1%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 MF ++P +P+F E +++K + VAG+DEVGRG LAGPVV AA++LD + IP G+NDS Sbjct: 1 MF--NVPFQPNFSYELDLQKKGFFYVAGVDEVGRGPLAGPVVTAAVVLDKSRIPEGLNDS 58 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK+S ++R LY +I +A+ IS++S + IDK +I KATL+A+ V L + AL Sbjct: 59 KKLSRQQRNRLYYEILQNALAISVASLCARTIDKSDIRKATLEAMRRCVTGLAISAHYAL 118 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 IDGR IP +LPC A A+IKGD S+SIAAASIIAKV RDR+M+ A + Y +Y + HVGY Sbjct: 119 IDGRDIPSNLPCPAIALIKGDQSSVSIAAASIIAKVIRDRMMQYAGRVYQNYDLEKHVGY 178 Query: 180 PTAKHQQVIKEKGPSC-IHRLTFRPLR 205 T H+ I + GP +HR +F PL+ Sbjct: 179 GTVAHRAAIDKYGPIVRLHRYSFSPLK 205 >gi|182677913|ref|YP_001832059.1| ribonuclease H [Beijerinckia indica subsp. indica ATCC 9039] gi|182633796|gb|ACB94570.1| Ribonuclease H [Beijerinckia indica subsp. indica ATCC 9039] Length = 210 Score = 199 bits (505), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 100/201 (49%), Positives = 132/201 (65%), Gaps = 1/201 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 S P +P F E +R++ +AGIDEVGRG LAGPV AA+ILDP N+P G+NDSK +S Sbjct: 7 SNPSQPDFTFEKRLRKRGFTLIAGIDEVGRGPLAGPVTAAAVILDPKNLPQGLNDSKMLS 66 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 ++RE LY+ I + A+ ++I+ ID+ NI +ATL A+ + L + P L+DG Sbjct: 67 AEQREALYDLILARALAVAIACVGPGEIDRINIRQATLTAMRRTLPALALAPHYVLVDGN 126 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +PEDL C +IKGD+ SLSIAAASI+AKV RDRLM+ YP YGF++HVGY T Sbjct: 127 DLPEDLGCPGETIIKGDARSLSIAAASIVAKVARDRLMQRLSALYPAYGFENHVGYATQA 186 Query: 184 HQQVIKEKGPSCIHRLTFRPL 204 H I+ GP IHRL+F P Sbjct: 187 HLTAIEAYGPCPIHRLSFSPF 207 >gi|49475220|ref|YP_033261.1| ribonuclease HII [Bartonella henselae str. Houston-1] gi|81648141|sp|Q6G4E3|RNH2_BARHE RecName: Full=Ribonuclease HII; Short=RNase HII gi|49238025|emb|CAF27232.1| Ribonuclease HII [Bartonella henselae str. Houston-1] Length = 223 Score = 199 bits (505), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 103/204 (50%), Positives = 141/204 (69%), Gaps = 2/204 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 ++P +P+F E ++++ +AG+DEVGRG LAGPVV AA+ILD N IP G+NDSKK+S Sbjct: 13 NLPFKPNFACELDLQKQGFLYIAGVDEVGRGPLAGPVVTAAVILDKNRIPDGLNDSKKLS 72 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 ++R ELY +I SA+ ISI+S + ID+ +I KATL+A+ + L V AL+DGR Sbjct: 73 AQRRYELYHEILQSALAISIASLCARTIDQSDIRKATLEAMRRCIRGLAVPAHYALVDGR 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 IP LPC A A+IKGD S+SIAAASIIAKVTRD++M A + Y YG + HVGY T Sbjct: 133 DIPFQLPCPATALIKGDQRSVSIAAASIIAKVTRDQMMECAGQVYKGYGLEKHVGYATLA 192 Query: 184 HQQVIKEKGPSC-IHRLTFRPLRN 206 H+ +++ GP +HR +F PL+ Sbjct: 193 HRAALEKYGPVVGLHRYSFAPLKK 216 >gi|217977760|ref|YP_002361907.1| Ribonuclease H [Methylocella silvestris BL2] gi|217503136|gb|ACK50545.1| Ribonuclease H [Methylocella silvestris BL2] Length = 208 Score = 197 bits (501), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 102/201 (50%), Positives = 135/201 (67%), Gaps = 1/201 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 I +RP F LE + +++WPVAG+DE GRG LAGPV AA+ILDP+N+P G+NDSK+++ Sbjct: 6 ILDRPDFRLERKLLRRDVWPVAGVDEAGRGPLAGPVAAAAVILDPDNLPRGLNDSKQLTR 65 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 ++RE+LYE I A+ +++ +S + ID NI +AT A+ A+ L PR LIDG Sbjct: 66 EEREKLYESIMKRALAVAVGFSSVKEIDAVNIRQATFRAMRRALAALAASPRYVLIDGND 125 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + DL C+ ++KGD+ LSIAAASI+AKVTRDRLM +P YGF HVGY T H Sbjct: 126 LAPDLCCEGETIVKGDASILSIAAASIVAKVTRDRLMSRLCAVHPVYGFSQHVGYGTPAH 185 Query: 185 QQVIKEKGPSCIHRLTFRPLR 205 Q I+ GP HRLTFRP R Sbjct: 186 LQAIEAHGPCPFHRLTFRPFR 206 >gi|126724759|ref|ZP_01740602.1| ribonuclease HII [Rhodobacterales bacterium HTCC2150] gi|126705923|gb|EBA05013.1| ribonuclease HII [Rhodobacterales bacterium HTCC2150] Length = 209 Score = 196 bits (499), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 99/198 (50%), Positives = 137/198 (69%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + E +K + VAG+DEVGRG LAGPV AA+ILDP+NIP G+NDSKK+S KKR+ Sbjct: 6 PDYSFERAAIDKGIKIVAGVDEVGRGPLAGPVTAAAVILDPDNIPEGLNDSKKLSAKKRD 65 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+++I + A++SI+ AS ID+ NI +A+ A+ A++ L +P+ ALIDGR IP++ Sbjct: 66 LLFDQIMNVAMVSIAHASVAEIDEINIRQASHLAMVRAIQGLDQLPQLALIDGRDIPKET 125 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 PC A+IKGD S+SIAAASI+AKVTRDRLM + +P YG+D + GYPT H + Sbjct: 126 PCSGQAIIKGDGKSMSIAAASIVAKVTRDRLMVDLAQHHPGYGWDKNAGYPTKSHIAALN 185 Query: 190 EKGPSCIHRLTFRPLRNL 207 E G + HR +F P+ + Sbjct: 186 ELGVTQHHRCSFGPVHKM 203 >gi|163867862|ref|YP_001609066.1| ribonuclease HII [Bartonella tribocorum CIP 105476] gi|189043567|sp|A9IQL1|RNH2_BART1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|161017513|emb|CAK01071.1| Ribonuclease HII [Bartonella tribocorum CIP 105476] Length = 224 Score = 196 bits (497), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 102/203 (50%), Positives = 139/203 (68%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 S+ +P+F E ++++ + VAG+DEVGRG LAGPVV AA+ILD + IP G+NDSKK+S Sbjct: 14 SLSFQPNFLCELGLQKQGFFHVAGVDEVGRGPLAGPVVTAAVILDKDRIPDGLNDSKKLS 73 Query: 65 HKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +R LY +I SA+ SI+S + ID+ NI KATL+A+ + L V L+DGR Sbjct: 74 FLQRNRLYHEILQSALAASIASLCARTIDQSNIRKATLEAMRRCIIGLAVPAHYVLVDGR 133 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 IP +LPC A A+IKGD S+SIAAASIIAKVTRDR+M A + Y +YG + HVGY T Sbjct: 134 DIPSELPCPAMALIKGDQRSVSIAAASIIAKVTRDRMMECAGQVYTNYGLEKHVGYATLA 193 Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205 H++ + + GP +HR +F PL+ Sbjct: 194 HRRALDKYGPIVGLHRYSFAPLK 216 >gi|218660707|ref|ZP_03516637.1| ribonuclease HII [Rhizobium etli IE4771] Length = 215 Score = 194 bits (492), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 94/173 (54%), Positives = 128/173 (73%) Query: 34 RGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDK 93 RG LAGPVV AA+ILDP IP G+NDSK++S ++REEL+ +I ++A +SI+S+S ID+ Sbjct: 30 RGPLAGPVVAAAVILDPKRIPEGLNDSKQLSAQRREELFVQILATATVSIASSSSTRIDE 89 Query: 94 HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIA 153 +I KA+LDA+ A+ +L V L DG +P L C AV+KGD+ S+SIAAASI+A Sbjct: 90 TDIRKASLDAMRRAICSLAVPASYVLTDGLDVPPGLDCPGQAVVKGDARSVSIAAASIVA 149 Query: 154 KVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 KVTRDR+M AH +PDYGF +HVGY TA+H+ I++ GP +HR++FRPLR Sbjct: 150 KVTRDRMMARAHNVFPDYGFAAHVGYGTAQHRAGIEKHGPCSLHRMSFRPLRK 202 >gi|299134668|ref|ZP_07027860.1| Ribonuclease H [Afipia sp. 1NLS2] gi|298590478|gb|EFI50681.1| Ribonuclease H [Afipia sp. 1NLS2] Length = 254 Score = 192 bits (487), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 96/196 (48%), Positives = 134/196 (68%), Gaps = 1/196 (0%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 RP F E + ++ +WPVAG DEVGRG LAGPVV AA+ILDP+ IP GI+DSK+++ + R Sbjct: 24 RPSFRRERALLKQGIWPVAGCDEVGRGPLAGPVVAAAVILDPDRIPKGIDDSKRLTVEAR 83 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E L+E+I ++A++S+++A ID+ NI +A+L A+ AV+ L PR +DGR D Sbjct: 84 EALFEEICATAMVSVAAAPPWRIDRDNILRASLWALARAVQGLPQAPRHVFVDGRDR-ID 142 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 +PC VI GD + LSI AASI+AKVTRDRLM + +P+YGFDSH+GY +H + Sbjct: 143 VPCGCEPVIGGDGLLLSIGAASIVAKVTRDRLMCRLARVHPEYGFDSHMGYGVPRHLAAL 202 Query: 189 KEKGPSCIHRLTFRPL 204 + GP+ HR F P+ Sbjct: 203 ELHGPTPHHRRYFAPV 218 >gi|209886088|ref|YP_002289945.1| ribonuclease HII (RNase HII) [Oligotropha carboxidovorans OM5] gi|209874284|gb|ACI94080.1| ribonuclease HII (RNase HII) [Oligotropha carboxidovorans OM5] Length = 259 Score = 191 bits (486), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 95/196 (48%), Positives = 132/196 (67%), Gaps = 1/196 (0%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 RP F E + ++ +WPVAG DEVGRG LAGPVV AA+ILDP+ IP GINDSK+++ + R Sbjct: 28 RPSFRRERALMKQGIWPVAGCDEVGRGPLAGPVVAAAVILDPDRIPKGINDSKRLTAEAR 87 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E L+E+I ++A +S+++A ID+ NI +A+L A+ AV+ L PR +DGR Sbjct: 88 EALFEEICATAFVSVAAAPPWRIDRDNILRASLWALTRAVKGLPQPPRHVFVDGRD-KIA 146 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + C+ AVI GD + SI AASI+AKVTRDRLM ++YP YGF+SH+GY +H + Sbjct: 147 VSCECEAVIGGDGLLFSIGAASIVAKVTRDRLMCALARQYPQYGFESHMGYAVPQHLAAL 206 Query: 189 KEKGPSCIHRLTFRPL 204 + GP+ HR F P+ Sbjct: 207 ERHGPTPHHRRHFAPV 222 >gi|13476167|ref|NP_107737.1| ribonuclease HII [Mesorhizobium loti MAFF303099] gi|39932447|sp|Q986D0|RNH2_RHILO RecName: Full=Ribonuclease HII; Short=RNase HII gi|14026927|dbj|BAB53523.1| ribonuclease HII [Mesorhizobium loti MAFF303099] Length = 231 Score = 191 bits (484), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 102/202 (50%), Positives = 136/202 (67%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 I E+P F E +WPVAG+DE GRG LAGPVV AA++LDP NIP G++DSK++SH Sbjct: 14 IVEKPDFSFETKAMADGLWPVAGMDEAGRGPLAGPVVAAAVVLDPANIPEGLDDSKRLSH 73 Query: 66 KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 +RE L+ +I SA +S++S S + ID NI KA+L+A+ A+ L V P+ AL DGR Sbjct: 74 FQREALFLRILGSAQAVSMASISAEGIDGSNILKASLEAMRRALVGLSVRPKLALADGRD 133 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P LPC A+IKGD S SIAAASI+AKV RDR+M + YGF+ H+GY TA+H Sbjct: 134 VPPGLPCDGRALIKGDQRSQSIAAASIVAKVMRDRMMCGCGSHHDRYGFEVHMGYATARH 193 Query: 185 QQVIKEKGPSC-IHRLTFRPLR 205 + I+ GP +HR++F P R Sbjct: 194 RTAIETHGPVARLHRVSFAPFR 215 >gi|319408204|emb|CBI81857.1| Ribonuclease HII [Bartonella schoenbuchensis R1] Length = 223 Score = 191 bits (484), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 100/203 (49%), Positives = 137/203 (67%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 ++P +P F E + ++ + +AG+DEVGRG LAGPVV AA+ILD N+IP G+NDSKK S Sbjct: 13 NVPLQPDFSHELDLHKQGFFYIAGVDEVGRGPLAGPVVTAAVILDKNHIPEGLNDSKKFS 72 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 ++R +LY KI +A+ IS++S + ID+ +I KATL+A+ V L + L+DGR Sbjct: 73 AQQRNQLYGKILQNALAISVASICARVIDQSDIRKATLEAMRRCVVGLSIPAHYVLVDGR 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 IP L C A A+IKGD S+SIAAASI+AKVTRDR+M A + Y YG + HVGY T Sbjct: 133 DIPPHLLCPATALIKGDQRSVSIAAASIVAKVTRDRMMECAGRVYESYGLEKHVGYATVA 192 Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205 H+ I + GP +HR +F PL+ Sbjct: 193 HRTAIAKYGPILGLHRYSFAPLK 215 >gi|319784761|ref|YP_004144237.1| ribonuclease H [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170649|gb|ADV14187.1| Ribonuclease H [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 233 Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 100/202 (49%), Positives = 137/202 (67%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 I E+P F E + +WPVAG+DE GRG LAGPVV AA++LDP NIP G++DSK++SH Sbjct: 14 IIEKPDFSFETKAMAEGLWPVAGMDEAGRGPLAGPVVAAAVVLDPANIPDGLDDSKRLSH 73 Query: 66 KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 +RE L+ +I SA +S++S S + ID NI KA+L+A+ A+ L + P+ AL DGR Sbjct: 74 LQREALFLRILGSAQAVSMASISAEGIDGSNILKASLEAMRRALVGLSIRPKLALADGRD 133 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P LPC+ A+IKGD S SIAAASI+AKV RDR+M + YGF+ H+GY T +H Sbjct: 134 VPPGLPCEGRALIKGDQRSQSIAAASIVAKVMRDRMMCGCGNHHDRYGFEVHMGYATVRH 193 Query: 185 QQVIKEKGPSC-IHRLTFRPLR 205 + I+ GP +HR++F P R Sbjct: 194 RTAIEAHGPVARLHRVSFAPFR 215 >gi|126734213|ref|ZP_01749960.1| ribonuclease HII [Roseobacter sp. CCS2] gi|126717079|gb|EBA13943.1| ribonuclease HII [Roseobacter sp. CCS2] Length = 207 Score = 189 bits (479), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 96/199 (48%), Positives = 138/199 (69%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P F E+ ++ VAG+DEVGRG LAGPVV AA+IL+P NIP G+NDSKK++ K+R Sbjct: 3 KPDFSFESAAHQRGFIHVAGVDEVGRGPLAGPVVAAAVILNPANIPDGLNDSKKLTAKRR 62 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + LY+++ + A +SI+ A+ ID+HNI +A+ A+ AV L VI ALIDG IP D Sbjct: 63 DALYDELLAVADVSIAEATVAEIDEHNILRASHIAMVRAVAGLSVIAAHALIDGNMIPRD 122 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L + +IKGD SLSIAAASI+AKV RDR M +++P YG++ + GYPTA+H+ + Sbjct: 123 LAISSQTIIKGDGRSLSIAAASIMAKVWRDRHMVALAQQHPHYGWEKNAGYPTAQHKLGL 182 Query: 189 KEKGPSCIHRLTFRPLRNL 207 ++ G + HR +F+P+ N+ Sbjct: 183 QQFGVTEHHRRSFKPIHNI 201 >gi|240850070|ref|YP_002971463.1| ribonuclease HII [Bartonella grahamii as4aup] gi|240267193|gb|ACS50781.1| ribonuclease HII [Bartonella grahamii as4aup] Length = 224 Score = 189 bits (479), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 98/207 (47%), Positives = 139/207 (67%), Gaps = 4/207 (1%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 MF ++P +P+F E ++++ + +AG+DEVGRG LAGPVV AA+ILD ++IP +NDS Sbjct: 12 MF--NVPLQPNFSCELDLQKQGFFHIAGVDEVGRGPLAGPVVTAAVILDKDHIPNELNDS 69 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK+S +R LY +I SA+ +S++S + ID+ NI KATL+A+ + L + L Sbjct: 70 KKLSFLQRNRLYHEILQSALAVSVASLCARTIDQSNIRKATLEAMRRCIIGLAIPAHYVL 129 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 +DGR IP +L C A A+IKGD S+SIAAASIIAKVTRDR+M + Y YG + HVGY Sbjct: 130 VDGRDIPSELSCPAMALIKGDQRSVSIAAASIIAKVTRDRMMECVGQVYKGYGLEKHVGY 189 Query: 180 PTAKHQQVIKEKGPSC-IHRLTFRPLR 205 T H+ + + GP +HR +F PL+ Sbjct: 190 ATLAHRTALDKYGPIIGLHRYSFAPLK 216 >gi|118590790|ref|ZP_01548191.1| ribonuclease HII [Stappia aggregata IAM 12614] gi|118436766|gb|EAV43406.1| ribonuclease HII [Stappia aggregata IAM 12614] Length = 228 Score = 188 bits (478), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 94/205 (45%), Positives = 133/205 (64%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 +F + P+ P +E + G+DE GRG AGPVV AA+ILD + +P G+NDS Sbjct: 19 LFDLAFPDSPDLAVERKHAAAFDGRLCGVDEAGRGPWAGPVVTAAVILDYDRLPDGLNDS 78 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 KK++ +REEL+E+I +SA +S++SAS ID NI ATL A+ AV +L ++P L+ Sbjct: 79 KKLTEARREELFEQIVASAHVSLASASPATIDAVNIRTATLSAMVRAVNHLPLVPDYVLV 138 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DGR +P L A+IKGD L +AAASI+AKVTRDR+M ++PDYGF H GY Sbjct: 139 DGRDVPLGLKQAGQALIKGDGRCLCVAAASIVAKVTRDRMMVHLDARFPDYGFAQHKGYG 198 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLR 205 +HQQ ++ GP+ HR++F+P+R Sbjct: 199 VPQHQQALERHGPTVHHRMSFKPVR 223 >gi|90420158|ref|ZP_01228066.1| ribonuclease HII [Aurantimonas manganoxydans SI85-9A1] gi|90335492|gb|EAS49242.1| ribonuclease HII [Aurantimonas manganoxydans SI85-9A1] Length = 228 Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 97/197 (49%), Positives = 124/197 (62%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F EA + VAGIDE GRG LAGPVV AA+I + P G+NDSKK++ + RE Sbjct: 25 PDFSREAGLLADGKRFVAGIDEAGRGPLAGPVVTAAVIFPTRDFPDGLNDSKKLTAEDRE 84 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ +I + + I+SAS ID+ NI ATL A+ A+ L P L+DGR +P L Sbjct: 85 RLFAEIVAKGWVGIASASADEIDRFNIRGATLIAMRRALHALPQAPCHVLVDGRDVPPAL 144 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C AVI GD++SLSIAAASI+AKVTRDR+M A + Y YGF H+GY T +H I Sbjct: 145 RCAGTAVISGDALSLSIAAASIVAKVTRDRIMARACRAYEGYGFSRHMGYGTPEHLGAIA 204 Query: 190 EKGPSCIHRLTFRPLRN 206 GP+ IHR++F PLR Sbjct: 205 RLGPTPIHRMSFSPLRR 221 >gi|159042579|ref|YP_001531373.1| ribonuclease HII [Dinoroseobacter shibae DFL 12] gi|189043594|sp|A8LJU6|RNH2_DINSH RecName: Full=Ribonuclease HII; Short=RNase HII gi|157910339|gb|ABV91772.1| ribonuclease HII [Dinoroseobacter shibae DFL 12] Length = 206 Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 94/199 (47%), Positives = 133/199 (66%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 RPHF+ E + + +AG+DEVGRG LAGPV+ AA++LDP IP G+NDSK+++ K+R Sbjct: 3 RPHFQFETDLAARGYLRIAGVDEVGRGPLAGPVMAAAVVLDPGAIPEGLNDSKQVTAKRR 62 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E L ++ A + + A ID+ NI +A A+ A++ L P ALIDGR P+D Sbjct: 63 EALAAQLAQVAQVGVGVAEVAEIDRLNIRRAAHLAMLRALDALPAPPDMALIDGRDRPDD 122 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LPC A A+IKGD+ SLSIAAASI+AKV RDR+M ++P YG++++ GYPT H+ + Sbjct: 123 LPCAAHAIIKGDTKSLSIAAASIVAKVARDRVMTALAAEFPGYGWETNAGYPTQAHRAAL 182 Query: 189 KEKGPSCIHRLTFRPLRNL 207 + G S HR +FRP+ N+ Sbjct: 183 LDIGVSPHHRRSFRPVHNI 201 >gi|254472008|ref|ZP_05085409.1| ribonuclease HII [Pseudovibrio sp. JE062] gi|211959210|gb|EEA94409.1| ribonuclease HII [Pseudovibrio sp. JE062] Length = 217 Score = 185 bits (470), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 94/207 (45%), Positives = 130/207 (62%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 +F + P+ P E V + AGIDE GRG AGPVVVAA L+ +N+P G+NDS Sbjct: 8 LFDIAFPDAPDLRFERSVEQDLQGRFAGIDEAGRGPWAGPVVVAAASLNYDNLPEGLNDS 67 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 KK++ KREEL+E+I A +S+ S Q ID+ NI +ATL + +L V + I Sbjct: 68 KKLTEAKREELFEQILEVADVSVCVQSAQTIDRLNIREATLQGMRTCARSLSVPVKRFFI 127 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG+ +P LP + A+IKGD L+I+AASI+AKVTRDRLM + +P+YGF H GY Sbjct: 128 DGKDVPHHLPQEGQAMIKGDGRCLAISAASIVAKVTRDRLMVKMDRYFPEYGFAKHKGYG 187 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNL 207 T +HQ+ + G + +HR +FRP+R L Sbjct: 188 TKQHQEALAAHGVTPLHRCSFRPIREL 214 >gi|300024383|ref|YP_003756994.1| ribonuclease H [Hyphomicrobium denitrificans ATCC 51888] gi|299526204|gb|ADJ24673.1| Ribonuclease H [Hyphomicrobium denitrificans ATCC 51888] Length = 231 Score = 184 bits (466), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 96/197 (48%), Positives = 123/197 (62%), Gaps = 1/197 (0%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P FELEA + P+AG+DE GRG AGPVV AA+ILDP+ IP I+DSK + R Sbjct: 9 KPTFELEAAEHQLGSRPIAGVDEAGRGPWAGPVVAAAVILDPDKIPANIDDSKTLDEDSR 68 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 LY +I AI+ + A ID+ NI ATL A+ AV L P+ L+DG P Sbjct: 69 AFLYRRIMKVAIVGVGIADVDRIDRENILGATLWAMAEAVSQLGETPKLVLVDGDKTPR- 127 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 +P A++KGDS LSIAAASI+AKVTRDRLM + YP YGF+ H GY T +HQ I Sbjct: 128 IPMSVRAIVKGDSKCLSIAAASIVAKVTRDRLMMDFARAYPGYGFERHKGYGTPEHQAAI 187 Query: 189 KEKGPSCIHRLTFRPLR 205 + G S +HR +FRP++ Sbjct: 188 AKLGVSALHRRSFRPVQ 204 >gi|121601736|ref|YP_988707.1| ribonuclease HII [Bartonella bacilliformis KC583] gi|166225170|sp|A1URV4|RNH2_BARBK RecName: Full=Ribonuclease HII; Short=RNase HII gi|120613913|gb|ABM44514.1| ribonuclease HII [Bartonella bacilliformis KC583] Length = 222 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 100/200 (50%), Positives = 134/200 (67%), Gaps = 2/200 (1%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 + +P +P+F E ++ + + +AG+DEVGRG LAGPVV AA+IL ++ G+NDSKK+ Sbjct: 12 SDLPPQPNFSYELDLQNQGFFHIAGVDEVGRGPLAGPVVTAAVILSKDHSLDGLNDSKKL 71 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S +KR LY +I SA+ ISI+S + ID+ +I KATL+A+ V L V ALIDG Sbjct: 72 SVQKRNRLYCEILQSALAISIASICARAIDQSDIRKATLEAMRRCVMGLAVPAHYALIDG 131 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 R IP LPC A A++KGD S+SIAAASI+AKVTRDR+M A + Y YG + HVGY T Sbjct: 132 RDIPPHLPCPAKALVKGDQRSVSIAAASIVAKVTRDRMMEHAGQVYQGYGLEKHVGYATV 191 Query: 183 KHQQVIKEKGPSC-IHRLTF 201 H+ I E GP +HR +F Sbjct: 192 AHRAAIAEYGPVIGLHRYSF 211 >gi|260460365|ref|ZP_05808617.1| Ribonuclease H [Mesorhizobium opportunistum WSM2075] gi|259034010|gb|EEW35269.1| Ribonuclease H [Mesorhizobium opportunistum WSM2075] Length = 205 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 97/186 (52%), Positives = 130/186 (69%), Gaps = 2/186 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-I 80 +WPVAG+DE GRG LAGPVV AA++LDP NIP G++DSK++SH +RE L+ +I SA Sbjct: 4 GLWPVAGMDEAGRGPLAGPVVAAAVVLDPANIPEGLDDSKRLSHLQREALFLRILGSAQA 63 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 +S++S S + ID NI KA+L+A+ A+ L V P+ AL DGR +P LPC+ A+IKGD Sbjct: 64 VSMASISAEGIDGSNILKASLEAMRRALVGLSVRPKLALADGRDVPPGLPCEGRALIKGD 123 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC-IHRL 199 S SIAAASI+AKV RDR+M YGF+ H+GY TA+H+ I+ GP +HR+ Sbjct: 124 QRSQSIAAASIVAKVMRDRMMCGCGSHNGRYGFEVHMGYATARHRTAIEAHGPVARLHRV 183 Query: 200 TFRPLR 205 +F P R Sbjct: 184 SFSPFR 189 >gi|323135966|ref|ZP_08071049.1| Ribonuclease H [Methylocystis sp. ATCC 49242] gi|322399057|gb|EFY01576.1| Ribonuclease H [Methylocystis sp. ATCC 49242] Length = 204 Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 95/200 (47%), Positives = 134/200 (67%), Gaps = 2/200 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F LE +R + +WPVAG+DEVGRG LAGPV AA+ILDP +P G+NDSK + ++RE Sbjct: 6 PDFRLEGRLRRQGVWPVAGVDEVGRGPLAGPVAAAAVILDPARLPLGVNDSKALGPRERE 65 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +E+I S+A +S++ + ID NI +A+L A+ AV L + P L+DGR P Sbjct: 66 AAFERILSTAQAVSVAFVTPPEIDAMNIRQASLAAMARAVAGLSLAPAFVLVDGRD-PPP 124 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L C A++KGD+++LSIAAASI+AKV RD +MR YPDYGF+++ GY +H + Sbjct: 125 LACHCRAIVKGDALALSIAAASIVAKVARDGMMRRLAAAYPDYGFETNAGYGARRHLDAL 184 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 + GP+ +HR +F PLR+ S Sbjct: 185 ERIGPTPVHRFSFAPLRDKS 204 >gi|163842670|ref|YP_001627074.1| ribonuclease HII [Brucella suis ATCC 23445] gi|189043569|sp|B0CK74|RNH2_BRUSI RecName: Full=Ribonuclease HII; Short=RNase HII gi|163673393|gb|ABY37504.1| Ribonuclease HII [Brucella suis ATCC 23445] Length = 220 Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 98/203 (48%), Positives = 138/203 (67%), Gaps = 2/203 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 +P P F E + ++ + +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ Sbjct: 14 LPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTA 73 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 +RE LYE I + AI +S++S S + ID +IHKA L+A+ AV L + P AL+DGR Sbjct: 74 ARREALYEIILTKAITVSVASLSARSIDASDIHKAALEAMRRAVIGLTLKPCHALVDGRD 133 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P LPC A++KGD S+SIAAASI+AKVTRDR+M A +P YG + H GY T KH Sbjct: 134 VPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQKH 193 Query: 185 QQVIKEKGP-SCIHRLTFRPLRN 206 + I+ +GP +HR TF P++ Sbjct: 194 RAAIESEGPVPGLHRYTFAPIKG 216 >gi|255261565|ref|ZP_05340907.1| ribonuclease HII [Thalassiobium sp. R2A62] gi|255103900|gb|EET46574.1| ribonuclease HII [Thalassiobium sp. R2A62] Length = 205 Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 93/196 (47%), Positives = 131/196 (66%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE E V G+DEVGRG LAGPV AA+ LDPN IP G+NDSKK+S KKR+ L Sbjct: 5 FEFERAAMADGALRVVGVDEVGRGPLAGPVTAAAVWLDPNAIPEGLNDSKKLSAKKRDAL 64 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 Y ++ A +SI+ A+ + ID+HNI +A+ A+ AVE L V P ALIDG +P P Sbjct: 65 YAELLQVADVSIAHATVEEIDEHNILRASHIAMIRAVEGLAVAPDYALIDGNMVPRGFPI 124 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 Q+ +IKGD+ S+SI+AASI+AKV RD +M +++P+YG+DS+ GYP+ H+ + + Sbjct: 125 QSQTIIKGDARSVSISAASIMAKVCRDYVMVDLAQQHPEYGWDSNAGYPSKSHKNALLKY 184 Query: 192 GPSCIHRLTFRPLRNL 207 G + HR +F+P+ N+ Sbjct: 185 GVTPHHRRSFKPVHNI 200 >gi|84687971|ref|ZP_01015835.1| ribonuclease HII [Maritimibacter alkaliphilus HTCC2654] gi|84664003|gb|EAQ10503.1| ribonuclease HII [Rhodobacterales bacterium HTCC2654] Length = 208 Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 94/200 (47%), Positives = 132/200 (66%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 + P + E + + VAG+DEVGRG LAGPV AA+IL P+NIP G+NDSKK+S KK Sbjct: 3 DGPDYSYETAAFARGLARVAGVDEVGRGPLAGPVTAAAVILGPDNIPDGLNDSKKLSAKK 62 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 R+ L++ I + A + I+ A+ + ID +NI +A+ A+ AVE L +P LIDG IP Sbjct: 63 RDALFDAIMAGAQVGIAHATVEEIDTYNILRASHIAMLRAVEALGTVPDHLLIDGNLIPR 122 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 A AVIKGD SLSIAAASI+AKVTRDR+M +++P YG++ + GYP+ H Sbjct: 123 GCTVSAEAVIKGDGKSLSIAAASIVAKVTRDRIMVDLAQQHPGYGWERNAGYPSKSHISA 182 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 ++E G + HR +F+P+ N+ Sbjct: 183 LQELGVTPHHRRSFKPVHNI 202 >gi|27377632|ref|NP_769161.1| ribonuclease HII [Bradyrhizobium japonicum USDA 110] gi|39932385|sp|Q89S84|RNH2_BRAJA RecName: Full=Ribonuclease HII; Short=RNase HII gi|27350777|dbj|BAC47786.1| ribonuclease HII [Bradyrhizobium japonicum USDA 110] Length = 261 Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 95/201 (47%), Positives = 129/201 (64%), Gaps = 1/201 (0%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 + P + F E + ++ +WPVAG DE GRG LAGPVV AA+ILDP+ IP GI+DSK++ Sbjct: 22 EAAPVKASFRRERALIKRGIWPVAGCDEAGRGPLAGPVVAAAVILDPDRIPRGIDDSKRL 81 Query: 64 SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 + ++RE+L++KI ++A +S++ AS ID+ NI +A+L A+ AV L PR +DGR Sbjct: 82 TAEQREKLFDKICATAQVSVAVASPARIDRDNILRASLWALKRAVVALPEAPRHVFVDGR 141 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 D C AVI GD I LSIAAASI+AKVTRDRLM + P YGF+ H GY + Sbjct: 142 D-RLDTACDCEAVIGGDGIVLSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYGVPE 200 Query: 184 HQQVIKEKGPSCIHRLTFRPL 204 H + GP+ HR F P+ Sbjct: 201 HLDALNRLGPTVHHRSFFAPV 221 >gi|110633060|ref|YP_673268.1| ribonuclease HII [Mesorhizobium sp. BNC1] gi|110284044|gb|ABG62103.1| RNase HII [Chelativorans sp. BNC1] Length = 258 Score = 181 bits (460), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 97/203 (47%), Positives = 136/203 (66%), Gaps = 2/203 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 +P RP F +E + + + PVAG+DE GRG LAGPVV AA++LDP+ IP G++DSK+++ Sbjct: 19 LPVRPDFTIEWKIMREGLAPVAGLDEAGRGPLAGPVVAAAVVLDPDRIPEGLDDSKRLTA 78 Query: 66 KKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 + RE L ++I +A +S++S ID+ NI KA+L+A+ A++ L V P AL DGR Sbjct: 79 EARERLVQEIFEVAAAVSVASLCAASIDESNILKASLEAMRRALDGLCVRPAYALADGRD 138 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IP LPC AV+KGD S SIAAAS++AKV RDR+M P YGF SHVGY T +H Sbjct: 139 IPPGLPCPCRAVVKGDQRSQSIAAASMVAKVVRDRMMVRTGTLMPHYGFHSHVGYATERH 198 Query: 185 QQVIKEKGP-SCIHRLTFRPLRN 206 ++ I GP + +HR++F P + Sbjct: 199 REAITAYGPVTRLHRMSFSPFKT 221 >gi|189043695|sp|Q11KH2|RNH2_MESSB RecName: Full=Ribonuclease HII; Short=RNase HII Length = 253 Score = 181 bits (460), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 97/203 (47%), Positives = 136/203 (66%), Gaps = 2/203 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 +P RP F +E + + + PVAG+DE GRG LAGPVV AA++LDP+ IP G++DSK+++ Sbjct: 14 LPVRPDFTIEWKIMREGLAPVAGLDEAGRGPLAGPVVAAAVVLDPDRIPEGLDDSKRLTA 73 Query: 66 KKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 + RE L ++I +A +S++S ID+ NI KA+L+A+ A++ L V P AL DGR Sbjct: 74 EARERLVQEIFEVAAAVSVASLCAASIDESNILKASLEAMRRALDGLCVRPAYALADGRD 133 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IP LPC AV+KGD S SIAAAS++AKV RDR+M P YGF SHVGY T +H Sbjct: 134 IPPGLPCPCRAVVKGDQRSQSIAAASMVAKVVRDRMMVRTGTLMPHYGFHSHVGYATERH 193 Query: 185 QQVIKEKGP-SCIHRLTFRPLRN 206 ++ I GP + +HR++F P + Sbjct: 194 REAITAYGPVTRLHRMSFSPFKT 216 >gi|189043614|sp|A4YPP8|RNH2_BRASO RecName: Full=Ribonuclease HII; Short=RNase HII Length = 277 Score = 180 bits (457), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 1/195 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + ++ +WPVAG DE GRG LAGPVV AA+ILDPN IP G++DSK++S ++RE Sbjct: 50 PSFRRERALLKQGIWPVAGCDEAGRGPLAGPVVAAAVILDPNRIPKGLDDSKRLSAEQRE 109 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L++KI ++ +++ AS ID+ NI +A+L A+ AV L P+ +DGR D+ Sbjct: 110 ALFDKICKTSAFAVAYASPTRIDRDNILRASLWALSRAVRALPEAPKHVFVDGRDR-IDV 168 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C AVI GD + +SIAAASI+AKVTRDRLM + P YGF+ H GY +H + Sbjct: 169 DCNCEAVIGGDGLVMSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYAVPEHLAALD 228 Query: 190 EKGPSCIHRLTFRPL 204 GPS HR F P+ Sbjct: 229 RLGPSVHHRSLFAPV 243 >gi|146339063|ref|YP_001204111.1| ribonuclease HII [Bradyrhizobium sp. ORS278] gi|146191869|emb|CAL75874.1| Ribonuclease HII [Bradyrhizobium sp. ORS278] Length = 289 Score = 180 bits (457), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 1/195 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + ++ +WPVAG DE GRG LAGPVV AA+ILDPN IP G++DSK++S ++RE Sbjct: 62 PSFRRERALLKQGIWPVAGCDEAGRGPLAGPVVAAAVILDPNRIPKGLDDSKRLSAEQRE 121 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L++KI ++ +++ AS ID+ NI +A+L A+ AV L P+ +DGR D+ Sbjct: 122 ALFDKICKTSAFAVAYASPTRIDRDNILRASLWALSRAVRALPEAPKHVFVDGRDR-IDV 180 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C AVI GD + +SIAAASI+AKVTRDRLM + P YGF+ H GY +H + Sbjct: 181 DCNCEAVIGGDGLVMSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYAVPEHLAALD 240 Query: 190 EKGPSCIHRLTFRPL 204 GPS HR F P+ Sbjct: 241 RLGPSVHHRSLFAPV 255 >gi|62289376|ref|YP_221169.1| ribonuclease HII [Brucella abortus bv. 1 str. 9-941] gi|82699301|ref|YP_413875.1| ribonuclease HII [Brucella melitensis biovar Abortus 2308] gi|237814863|ref|ZP_04593861.1| Ribonuclease HII [Brucella abortus str. 2308 A] gi|254688691|ref|ZP_05151945.1| ribonuclease HII [Brucella abortus bv. 6 str. 870] gi|254696818|ref|ZP_05158646.1| ribonuclease HII [Brucella abortus bv. 2 str. 86/8/59] gi|254729725|ref|ZP_05188303.1| ribonuclease HII [Brucella abortus bv. 4 str. 292] gi|256256938|ref|ZP_05462474.1| ribonuclease HII [Brucella abortus bv. 9 str. C68] gi|260545871|ref|ZP_05821612.1| ribonuclease HII [Brucella abortus NCTC 8038] gi|260754167|ref|ZP_05866515.1| ribonuclease HII [Brucella abortus bv. 6 str. 870] gi|260757387|ref|ZP_05869735.1| ribonuclease HII [Brucella abortus bv. 4 str. 292] gi|260761211|ref|ZP_05873554.1| ribonuclease HII [Brucella abortus bv. 2 str. 86/8/59] gi|260883192|ref|ZP_05894806.1| ribonuclease HII [Brucella abortus bv. 9 str. C68] gi|297247789|ref|ZP_06931507.1| ribonuclease HII [Brucella abortus bv. 5 str. B3196] gi|73917601|sp|Q57EX6|RNH2_BRUAB RecName: Full=Ribonuclease HII; Short=RNase HII gi|97182300|sp|Q2YMC3|RNH2_BRUA2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|62195508|gb|AAX73808.1| RnhB, ribonuclease HII [Brucella abortus bv. 1 str. 9-941] gi|82615402|emb|CAJ10371.1| Ribonuclease HII/HIII [Brucella melitensis biovar Abortus 2308] gi|237789700|gb|EEP63910.1| Ribonuclease HII [Brucella abortus str. 2308 A] gi|260097278|gb|EEW81153.1| ribonuclease HII [Brucella abortus NCTC 8038] gi|260667705|gb|EEX54645.1| ribonuclease HII [Brucella abortus bv. 4 str. 292] gi|260671643|gb|EEX58464.1| ribonuclease HII [Brucella abortus bv. 2 str. 86/8/59] gi|260674275|gb|EEX61096.1| ribonuclease HII [Brucella abortus bv. 6 str. 870] gi|260872720|gb|EEX79789.1| ribonuclease HII [Brucella abortus bv. 9 str. C68] gi|297174958|gb|EFH34305.1| ribonuclease HII [Brucella abortus bv. 5 str. B3196] Length = 220 Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 97/203 (47%), Positives = 137/203 (67%), Gaps = 2/203 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 +P P F E + ++ + +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ Sbjct: 14 LPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTA 73 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 +RE LYE I + AI +S++S S + ID +I KA L+A+ AV L + P AL+DGR Sbjct: 74 ARREALYEIILTKAITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRD 133 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P LPC A++KGD S+SIAAASI+AKVTRDR+M A +P YG + H GY T KH Sbjct: 134 VPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQKH 193 Query: 185 QQVIKEKGP-SCIHRLTFRPLRN 206 + I+ +GP +HR TF P++ Sbjct: 194 RAAIESEGPVPGLHRYTFAPIKG 216 >gi|17987825|ref|NP_540459.1| ribonuclease HII [Brucella melitensis bv. 1 str. 16M] gi|23501290|ref|NP_697417.1| ribonuclease HII [Brucella suis 1330] gi|161618362|ref|YP_001592249.1| ribonuclease HII [Brucella canis ATCC 23365] gi|225626901|ref|ZP_03784940.1| Ribonuclease HII [Brucella ceti str. Cudo] gi|225851926|ref|YP_002732159.1| ribonuclease HII [Brucella melitensis ATCC 23457] gi|254701198|ref|ZP_05163026.1| ribonuclease HII [Brucella suis bv. 5 str. 513] gi|254703743|ref|ZP_05165571.1| ribonuclease HII [Brucella suis bv. 3 str. 686] gi|254707877|ref|ZP_05169705.1| ribonuclease HII [Brucella pinnipedialis M163/99/10] gi|254709539|ref|ZP_05171350.1| ribonuclease HII [Brucella pinnipedialis B2/94] gi|254713044|ref|ZP_05174855.1| ribonuclease HII [Brucella ceti M644/93/1] gi|254716603|ref|ZP_05178414.1| ribonuclease HII [Brucella ceti M13/05/1] gi|256031033|ref|ZP_05444647.1| ribonuclease HII [Brucella pinnipedialis M292/94/1] gi|256044108|ref|ZP_05447019.1| ribonuclease HII [Brucella melitensis bv. 1 str. Rev.1] gi|256060525|ref|ZP_05450694.1| ribonuclease HII [Brucella neotomae 5K33] gi|256112906|ref|ZP_05453822.1| ribonuclease HII [Brucella melitensis bv. 3 str. Ether] gi|256159091|ref|ZP_05456917.1| ribonuclease HII [Brucella ceti M490/95/1] gi|256254436|ref|ZP_05459972.1| ribonuclease HII [Brucella ceti B1/94] gi|256264562|ref|ZP_05467094.1| ribonuclease HII [Brucella melitensis bv. 2 str. 63/9] gi|256368842|ref|YP_003106348.1| ribonuclease HII [Brucella microti CCM 4915] gi|260168165|ref|ZP_05754976.1| ribonuclease HII [Brucella sp. F5/99] gi|260563467|ref|ZP_05833953.1| ribonuclease HII [Brucella melitensis bv. 1 str. 16M] gi|260567002|ref|ZP_05837472.1| ribonuclease HII [Brucella suis bv. 4 str. 40] gi|261218402|ref|ZP_05932683.1| ribonuclease HII [Brucella ceti M13/05/1] gi|261221604|ref|ZP_05935885.1| ribonuclease HII [Brucella ceti B1/94] gi|261315368|ref|ZP_05954565.1| ribonuclease HII [Brucella pinnipedialis M163/99/10] gi|261317065|ref|ZP_05956262.1| ribonuclease HII [Brucella pinnipedialis B2/94] gi|261320749|ref|ZP_05959946.1| ribonuclease HII [Brucella ceti M644/93/1] gi|261324519|ref|ZP_05963716.1| ribonuclease HII [Brucella neotomae 5K33] gi|261751735|ref|ZP_05995444.1| ribonuclease HII [Brucella suis bv. 5 str. 513] gi|261754388|ref|ZP_05998097.1| ribonuclease HII [Brucella suis bv. 3 str. 686] gi|261757623|ref|ZP_06001332.1| ribonuclease HII [Brucella sp. F5/99] gi|265988103|ref|ZP_06100660.1| ribonuclease HII [Brucella pinnipedialis M292/94/1] gi|265990520|ref|ZP_06103077.1| ribonuclease HII [Brucella melitensis bv. 1 str. Rev.1] gi|265994348|ref|ZP_06106905.1| ribonuclease HII [Brucella melitensis bv. 3 str. Ether] gi|265997568|ref|ZP_06110125.1| ribonuclease HII [Brucella ceti M490/95/1] gi|61234184|sp|P0A4D9|RNH2_BRUME RecName: Full=Ribonuclease HII; Short=RNase HII gi|61234188|sp|P0A4E0|RNH2_BRUSU RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043568|sp|A9M8G2|RNH2_BRUC2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807968|sp|C0RH97|RNH2_BRUMB RecName: Full=Ribonuclease HII; Short=RNase HII gi|2984785|gb|AAC08032.1| ribonuclease HII [Brucella melitensis] gi|17983553|gb|AAL52723.1| ribonuclease hii [Brucella melitensis bv. 1 str. 16M] gi|23347178|gb|AAN29332.1| ribonuclease HII [Brucella suis 1330] gi|161335173|gb|ABX61478.1| Ribonuclease HII [Brucella canis ATCC 23365] gi|225618558|gb|EEH15601.1| Ribonuclease HII [Brucella ceti str. Cudo] gi|225640291|gb|ACO00205.1| Ribonuclease HII [Brucella melitensis ATCC 23457] gi|255999000|gb|ACU47399.1| ribonuclease HII [Brucella microti CCM 4915] gi|260153483|gb|EEW88575.1| ribonuclease HII [Brucella melitensis bv. 1 str. 16M] gi|260156520|gb|EEW91600.1| ribonuclease HII [Brucella suis bv. 4 str. 40] gi|260920188|gb|EEX86841.1| ribonuclease HII [Brucella ceti B1/94] gi|260923491|gb|EEX90059.1| ribonuclease HII [Brucella ceti M13/05/1] gi|261293439|gb|EEX96935.1| ribonuclease HII [Brucella ceti M644/93/1] gi|261296288|gb|EEX99784.1| ribonuclease HII [Brucella pinnipedialis B2/94] gi|261300499|gb|EEY03996.1| ribonuclease HII [Brucella neotomae 5K33] gi|261304394|gb|EEY07891.1| ribonuclease HII [Brucella pinnipedialis M163/99/10] gi|261737607|gb|EEY25603.1| ribonuclease HII [Brucella sp. F5/99] gi|261741488|gb|EEY29414.1| ribonuclease HII [Brucella suis bv. 5 str. 513] gi|261744141|gb|EEY32067.1| ribonuclease HII [Brucella suis bv. 3 str. 686] gi|262552036|gb|EEZ08026.1| ribonuclease HII [Brucella ceti M490/95/1] gi|262765461|gb|EEZ11250.1| ribonuclease HII [Brucella melitensis bv. 3 str. Ether] gi|263001304|gb|EEZ13879.1| ribonuclease HII [Brucella melitensis bv. 1 str. Rev.1] gi|263094927|gb|EEZ18635.1| ribonuclease HII [Brucella melitensis bv. 2 str. 63/9] gi|264660300|gb|EEZ30561.1| ribonuclease HII [Brucella pinnipedialis M292/94/1] gi|326408425|gb|ADZ65490.1| ribonuclease HII [Brucella melitensis M28] gi|326538139|gb|ADZ86354.1| ribonuclease HII [Brucella melitensis M5-90] Length = 220 Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 97/203 (47%), Positives = 137/203 (67%), Gaps = 2/203 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 +P P F E + ++ + +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ Sbjct: 14 LPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTA 73 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 +RE LYE I + AI +S++S S + ID +I KA L+A+ AV L + P AL+DGR Sbjct: 74 ARREALYEIILTKAITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRD 133 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P LPC A++KGD S+SIAAASI+AKVTRDR+M A +P YG + H GY T KH Sbjct: 134 VPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQKH 193 Query: 185 QQVIKEKGP-SCIHRLTFRPLRN 206 + I+ +GP +HR TF P++ Sbjct: 194 RAAIESEGPVPGLHRYTFAPIKG 216 >gi|189043613|sp|A5EEC1|RNH2_BRASB RecName: Full=Ribonuclease HII; Short=RNase HII Length = 289 Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 1/195 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + ++ +WPVAG DE GRG LAGPVV AA+ILDPN IP G++DSK++S ++RE Sbjct: 62 PSFRRERALLKQGIWPVAGCDEAGRGPLAGPVVAAAVILDPNRIPKGLDDSKRLSAEQRE 121 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L++KI ++ +++ AS ID+ NI +A+L A+ AV L P+ +DGR D+ Sbjct: 122 ALFDKICKTSAFAVAFASPARIDRDNILRASLWALSRAVRALPEAPKHVFVDGRDR-IDV 180 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C AVI GD + +SIAAASI+AKVTRDRLM + P YGF+ H GY +H + Sbjct: 181 DCHCEAVIGGDGLVMSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYGVPEHLAALD 240 Query: 190 EKGPSCIHRLTFRPL 204 GPS HR F P+ Sbjct: 241 RLGPSVHHRSLFAPV 255 >gi|306842323|ref|ZP_07474982.1| ribonuclease HII [Brucella sp. BO2] gi|306287539|gb|EFM58998.1| ribonuclease HII [Brucella sp. BO2] Length = 220 Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 97/203 (47%), Positives = 137/203 (67%), Gaps = 2/203 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 +P P F E + ++ + +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ Sbjct: 14 LPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTA 73 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 +RE LYE I + AI +S++S S + ID +I KA L+A+ AV L + P AL+DGR Sbjct: 74 ARREALYEIILTKAITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRD 133 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P LPC A++KGD S+SIAAASI+AKVTRDR+M A +P YG + H GY T KH Sbjct: 134 VPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYGTQKH 193 Query: 185 QQVIKEKGP-SCIHRLTFRPLRN 206 + I+ +GP +HR TF P++ Sbjct: 194 RAAIESEGPVPGLHRYTFAPIKG 216 >gi|148253836|ref|YP_001238421.1| ribonuclease HII [Bradyrhizobium sp. BTAi1] gi|146406009|gb|ABQ34515.1| RNase HII [Bradyrhizobium sp. BTAi1] Length = 292 Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 1/195 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + ++ +WPVAG DE GRG LAGPVV AA+ILDPN IP G++DSK++S ++RE Sbjct: 65 PSFRRERALLKQGIWPVAGCDEAGRGPLAGPVVAAAVILDPNRIPKGLDDSKRLSAEQRE 124 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L++KI ++ +++ AS ID+ NI +A+L A+ AV L P+ +DGR D+ Sbjct: 125 ALFDKICKTSAFAVAFASPARIDRDNILRASLWALSRAVRALPEAPKHVFVDGRDR-IDV 183 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C AVI GD + +SIAAASI+AKVTRDRLM + P YGF+ H GY +H + Sbjct: 184 DCHCEAVIGGDGLVMSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYGVPEHLAALD 243 Query: 190 EKGPSCIHRLTFRPL 204 GPS HR F P+ Sbjct: 244 RLGPSVHHRSLFAPV 258 >gi|114705285|ref|ZP_01438193.1| ribonuclease HII protein [Fulvimarina pelagi HTCC2506] gi|114540070|gb|EAU43190.1| ribonuclease HII protein [Fulvimarina pelagi HTCC2506] Length = 245 Score = 179 bits (453), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 97/197 (49%), Positives = 131/197 (66%), Gaps = 1/197 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD-PNNIPFGINDSKKISHKKR 68 P F E + E +AG+DEVGRG LAGPVV AA+I + P IP GINDSK+++ K R Sbjct: 19 PDFSREHALLEAGAEWIAGVDEVGRGPLAGPVVAAAVIFENPRRIPVGINDSKQLTAKAR 78 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E+L+ I ++A ++I+S S + ID +I +ATL A+ A+ L + P AL DGR +P Sbjct: 79 EQLFADILANAHVAIASVSAKEIDAIDIRQATLTAMTKALAQLVIRPCHALFDGRDVPPA 138 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 A++KGDSIS+SIAAASI+AKV RDR+M+ A YP YGF ++VGY A H I Sbjct: 139 WTANGTAIVKGDSISVSIAAASIVAKVQRDRMMQHACGLYPGYGFTTNVGYGCAAHLAAI 198 Query: 189 KEKGPSCIHRLTFRPLR 205 GP+ IHR++F+PLR Sbjct: 199 AALGPTPIHRMSFKPLR 215 >gi|254693174|ref|ZP_05155002.1| ribonuclease HII [Brucella abortus bv. 3 str. Tulya] gi|261213414|ref|ZP_05927695.1| ribonuclease HII [Brucella abortus bv. 3 str. Tulya] gi|260915021|gb|EEX81882.1| ribonuclease HII [Brucella abortus bv. 3 str. Tulya] Length = 220 Score = 178 bits (452), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 96/203 (47%), Positives = 136/203 (66%), Gaps = 2/203 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 +P P F E + ++ + +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ Sbjct: 14 LPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTA 73 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 +RE LYE I + AI +S++S S + ID +I KA L+A+ AV L + P AL+DGR Sbjct: 74 ARREALYEIILTKAITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRD 133 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P LPC A++KGD +SIAAASI+AKVTRDR+M A +P YG + H GY T KH Sbjct: 134 VPPGLPCPGSALVKGDQRCVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQKH 193 Query: 185 QQVIKEKGP-SCIHRLTFRPLRN 206 + I+ +GP +HR TF P++ Sbjct: 194 RAAIESEGPVPGLHRYTFAPIKG 216 >gi|307941608|ref|ZP_07656963.1| ribonuclease HII [Roseibium sp. TrichSKD4] gi|307775216|gb|EFO34422.1| ribonuclease HII [Roseibium sp. TrichSKD4] Length = 216 Score = 178 bits (451), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 88/180 (48%), Positives = 118/180 (65%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 +AG+DE GRG AGPVV AA+ILD + +P G+ DSKK+S KREEL+ +I A +S++S Sbjct: 33 LAGVDEAGRGPWAGPVVTAAVILDYDKVPSGLTDSKKLSEAKREELFPQICEHAFVSVAS 92 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A + ID NI ATL+A+ AV L PR +IDGR +P L A++KGDS L+ Sbjct: 93 AGPKTIDLENIRTATLNAMVRAVSGLAFPPRYVMIDGRDVPFGLSAPGQALVKGDSRCLA 152 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 +AAASI+AKV RDR+M + P+YGF H GY HQ + E GPS HR +F+P++ Sbjct: 153 VAAASIVAKVMRDRMMVRLDQIAPEYGFAQHKGYGVPAHQAALSEHGPSIHHRFSFKPVQ 212 >gi|254718570|ref|ZP_05180381.1| ribonuclease HII [Brucella sp. 83/13] gi|265983545|ref|ZP_06096280.1| ribonuclease HII [Brucella sp. 83/13] gi|264662137|gb|EEZ32398.1| ribonuclease HII [Brucella sp. 83/13] Length = 220 Score = 178 bits (451), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 97/203 (47%), Positives = 136/203 (66%), Gaps = 2/203 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 +P P F E + ++ +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ Sbjct: 14 LPLAPDFSQEQQLMKRGSKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTA 73 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 +RE LYE I + AI +S++S S + ID +I KA L+A+ AV L + P AL+DGR Sbjct: 74 ARREALYEIILAKAIAVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRD 133 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P LPC A++KGD S+SIAAASI+AKVTRDR+M A +P YG + H GY T KH Sbjct: 134 VPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYGTQKH 193 Query: 185 QQVIKEKGP-SCIHRLTFRPLRN 206 + I+ +GP +HR TF P++ Sbjct: 194 RAAIESEGPVPGLHRYTFAPIKG 216 >gi|254503735|ref|ZP_05115886.1| ribonuclease HII [Labrenzia alexandrii DFL-11] gi|222439806|gb|EEE46485.1| ribonuclease HII [Labrenzia alexandrii DFL-11] Length = 218 Score = 177 bits (450), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 89/205 (43%), Positives = 125/205 (60%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 +F + P+ P ++E + + G+DE GRG AGPVV AA+ILD N+P G+NDS Sbjct: 7 LFDLAFPDNPDLKIEKKHAKSYDGLLCGVDEAGRGPWAGPVVTAAVILDYANVPAGLNDS 66 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 KK++ KRE L+ +I ++ + +SAS +DK NI ATL A+ AV L +P+ LI Sbjct: 67 KKLTEAKRESLFGEILKTSWVCAASASPATVDKLNIRTATLSAMVRAVNGLPRVPQYVLI 126 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DGR +P L A+IKGD L +AAASI+AKV RDR+M ++P YGF H GY Sbjct: 127 DGRDVPPGLAQPGQALIKGDGRCLCVAAASIVAKVLRDRMMVALEPEFPGYGFAQHKGYG 186 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLR 205 HQ + GP+ HR++F+P+R Sbjct: 187 VPAHQAALDTLGPTAHHRMSFKPVR 211 >gi|148560173|ref|YP_001258413.1| ribonuclease HII [Brucella ovis ATCC 25840] gi|294851769|ref|ZP_06792442.1| ribonuclease HII [Brucella sp. NVSL 07-0026] gi|166225171|sp|A5VNW6|RNH2_BRUO2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|148371430|gb|ABQ61409.1| ribonuclease HII [Brucella ovis ATCC 25840] gi|294820358|gb|EFG37357.1| ribonuclease HII [Brucella sp. NVSL 07-0026] Length = 220 Score = 177 bits (448), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 96/203 (47%), Positives = 136/203 (66%), Gaps = 2/203 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 +P P F E + ++ + +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ Sbjct: 14 LPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTA 73 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 +RE LYE I + AI +S++S S + ID +I KA L+A+ AV L + P AL+DGR Sbjct: 74 ARREALYEIILTKAITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRD 133 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P L C A++KGD S+SIAAASI+AKVTRDR+M A +P YG + H GY T KH Sbjct: 134 VPPGLSCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQKH 193 Query: 185 QQVIKEKGP-SCIHRLTFRPLRN 206 + I+ +GP +HR TF P++ Sbjct: 194 RAAIESEGPVPGLHRYTFAPIKG 216 >gi|153007852|ref|YP_001369067.1| ribonuclease HII [Ochrobactrum anthropi ATCC 49188] gi|166226633|sp|A6WW84|RNH2_OCHA4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|151559740|gb|ABS13238.1| Ribonuclease H [Ochrobactrum anthropi ATCC 49188] Length = 220 Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 99/203 (48%), Positives = 132/203 (65%), Gaps = 2/203 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 IP P F E + + + + GIDE GRG LAGPVV AA++LD +N+P G++DSK+++ Sbjct: 14 IPLAPDFSEEKRLLARGLKHIVGIDEAGRGPLAGPVVAAAVVLDIDNLPNGLDDSKRLTA 73 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KRE LYE I AI +S++S S + ID +I KA L+A+ A L + P ALIDGR Sbjct: 74 VKREALYETILEKAITVSVASLSARSIDASDIRKAALEAMRRASVGLTLQPCHALIDGRD 133 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P LPC A++KGD S+SIAAASI+AKVTRDR+M A +P YG + H GY T KH Sbjct: 134 VPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATVKH 193 Query: 185 QQVIKEKGP-SCIHRLTFRPLRN 206 + I+ GP IHR TF P++ Sbjct: 194 RAAIETTGPVPGIHRYTFAPIKG 216 >gi|83950881|ref|ZP_00959614.1| ribonuclease HII [Roseovarius nubinhibens ISM] gi|83838780|gb|EAP78076.1| ribonuclease HII [Roseovarius nubinhibens ISM] Length = 209 Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 90/198 (45%), Positives = 133/198 (67%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + E + VAG+DEVGRG LAGPV AA++LDP IP G+NDSK ++ K+RE Sbjct: 3 PDYRFEDEAIAQGFGVVAGVDEVGRGPLAGPVTAAAVVLDPARIPAGLNDSKALTPKRRE 62 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+++I + A +SI+ AS + ID+ NI +A+ A+ AV L V AL+DG +P DL Sbjct: 63 ALFDEIAAVAHVSIAHASVEEIDEINILRASHLAMERAVAGLPVAAGFALVDGNLLPRDL 122 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A AVIKGD++SLSI+AASI+AK+ RDR+M + YP YG++++ GYP+ H++ ++ Sbjct: 123 RIPARAVIKGDALSLSISAASIMAKICRDRIMWDLAQHYPGYGWETNAGYPSKSHKEALR 182 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + HR +F+P+ N+ Sbjct: 183 NLGVTPHHRRSFKPVHNI 200 >gi|326794449|ref|YP_004312269.1| ribonuclease H [Marinomonas mediterranea MMB-1] gi|326545213|gb|ADZ90433.1| Ribonuclease H [Marinomonas mediterranea MMB-1] Length = 203 Score = 174 bits (442), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 97/181 (53%), Positives = 123/181 (67%), Gaps = 1/181 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DE GRG LAG VV AA+ILDP+ G+NDSKK+S KKRE LY +I A+ SI+ Sbjct: 17 VAGVDEAGRGPLAGDVVAAAVILDPDLTIDGLNDSKKLSEKKRERLYSQIIEKALSFSIA 76 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID+ NI A++ A+ AV +L V ALIDG IP DL C A AV+KGD+ Sbjct: 77 RASVAEIDELNILHASMLAMTRAVNSLPVPAEHALIDGNRIPLDLKCPAEAVVKGDARHQ 136 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKVTRDR + + +KYP+Y F+ H GYPTA H IK+ G IHR +F P+ Sbjct: 137 AIAAASILAKVTRDREIVLMAEKYPEYAFEKHKGYPTAVHLDAIKQHGVCEIHRTSFGPV 196 Query: 205 R 205 + Sbjct: 197 K 197 >gi|117923822|ref|YP_864439.1| RNase HII [Magnetococcus sp. MC-1] gi|189043692|sp|A0L4Z0|RNH2_MAGSM RecName: Full=Ribonuclease HII; Short=RNase HII gi|117607578|gb|ABK43033.1| RNase HII [Magnetococcus sp. MC-1] Length = 213 Score = 174 bits (440), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 94/202 (46%), Positives = 129/202 (63%), Gaps = 4/202 (1%) Query: 10 PHFELEAMVREKN--MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 P ELE + N + + G+DE GRG L GPVV AA++LD +N+P G+NDSK++S KK Sbjct: 9 PDLELECALLRSNRAIKTLCGVDEAGRGPLCGPVVAAAVVLDLDNLPVGLNDSKQLSAKK 68 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ--VIPRSALIDGRSI 125 RE+L+E+I ++ + + AS ID NI A++ A+ AV LQ ++ ALIDG + Sbjct: 69 REQLFEQIYVTSQVGVGEASVAEIDALNILHASMLAMVRAVTALQGRLVVDHALIDGNRV 128 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P LP AV+KGD+ SLSIAAASIIAKVTRDR+M + YP YG+ GYPT H Sbjct: 129 PATLPVPGQAVVKGDAKSLSIAAASIIAKVTRDRIMAELDRDYPHYGWAKSQGYPTQAHL 188 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 Q + G + HR +F+P++ L Sbjct: 189 QALALHGVTPHHRRSFKPVKQL 210 >gi|15598838|ref|NP_252332.1| ribonuclease HII [Pseudomonas aeruginosa PAO1] gi|37999786|sp|Q9HXY9|RNH2_PSEAE RecName: Full=Ribonuclease HII; Short=RNase HII gi|9949802|gb|AAG07030.1|AE004784_3 ribonuclease HII [Pseudomonas aeruginosa PAO1] Length = 201 Score = 174 bits (440), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 96/184 (52%), Positives = 122/184 (66%), Gaps = 4/184 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L GPVV AA+ILDP+ G+NDSKK+S +RE L+E+I A+ I+ Sbjct: 14 VAGVDEVGRGPLCGPVVTAAVILDPSRPILGLNDSKKLSEARREALFEEIREKALAWCIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AVE L VIPR ALIDG P+ +PC V+KGDS Sbjct: 74 RAEVEEIDRLNILHATMLAMQRAVEGLSVIPRLALIDGNRCPKLAVPCAP--VVKGDSQV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV+RDR M + YP YG H GYPTA H + + GP+ IHR +F P Sbjct: 132 PAIAAASILAKVSRDREMVELDRVYPGYGMAGHKGYPTAVHLEALSRLGPTPIHRRSFAP 191 Query: 204 LRNL 207 +R L Sbjct: 192 VREL 195 >gi|92118687|ref|YP_578416.1| ribonuclease HII [Nitrobacter hamburgensis X14] gi|122417043|sp|Q1QIJ1|RNH2_NITHX RecName: Full=Ribonuclease HII; Short=RNase HII gi|91801581|gb|ABE63956.1| RNase HII [Nitrobacter hamburgensis X14] Length = 267 Score = 174 bits (440), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 96/195 (49%), Positives = 129/195 (66%), Gaps = 1/195 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F+ E + ++ +WPVAG DEVGRG LAGPVV AA++LDP IP GI+DSK+++ +RE Sbjct: 43 PSFQHERALLKRGVWPVAGCDEVGRGPLAGPVVAAAVVLDPKRIPKGIDDSKRLTAARRE 102 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 EL+E+IT++A +++ AS ID+ NI +A+L A+ AV L +PR +DGR E + Sbjct: 103 ELFEEITATASFAVAFASTARIDRDNILRASLWALARAVHALPDMPRHVFVDGRDRIE-I 161 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C VI GD I LSIAAASI+AKVTRDRLM + P YGF++H GY H + + Sbjct: 162 ACACEPVIGGDGIVLSIAAASIVAKVTRDRLMCKLAQDCPGYGFETHKGYGVPAHLEALG 221 Query: 190 EKGPSCIHRLTFRPL 204 GPS HR F P+ Sbjct: 222 RLGPSPHHRSFFAPV 236 >gi|296444554|ref|ZP_06886518.1| Ribonuclease H [Methylosinus trichosporium OB3b] gi|296257822|gb|EFH04885.1| Ribonuclease H [Methylosinus trichosporium OB3b] Length = 200 Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 97/197 (49%), Positives = 128/197 (64%), Gaps = 2/197 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 PHF LE + +WPVAG+DE GRG LAGPV AA+ILDP +P G++DSK ++ + R Sbjct: 3 PHFRLETRLLRDGLWPVAGVDEAGRGPLAGPVAAAAVILDPRRLPEGVDDSKALTAEARA 62 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +E+I +SA+ I ++ S + ID NI +ATL A+ AV L + PR ALIDG P Sbjct: 63 AAFERIAASALAIGVAFVSAEEIDAMNIRQATLAAMARAVAALSLAPRHALIDGND-PPS 121 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L C A A++KGD+ LSIAAASI+AKV RDR MR + YP YGF ++ GY T +H I Sbjct: 122 LACPAEAIVKGDASCLSIAAASIVAKVMRDRQMRRLAELYPAYGFAANAGYGTKEHLAAI 181 Query: 189 KEKGPSCIHRLTFRPLR 205 GP+ HR +F P+R Sbjct: 182 AALGPTPHHRTSFSPMR 198 >gi|310817212|ref|YP_003965176.1| ribonuclease HII [Ketogulonicigenium vulgare Y25] gi|308755947|gb|ADO43876.1| ribonuclease HII [Ketogulonicigenium vulgare Y25] Length = 209 Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 91/200 (45%), Positives = 133/200 (66%), Gaps = 2/200 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 +RP + E + + VAG+DEVGRG LAGPV AA+ILDP NIP G+NDSKK+S K+ Sbjct: 3 DRPDYSFELAAQARGFARVAGVDEVGRGPLAGPVTAAAVILDPANIPEGLNDSKKLSAKR 62 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 R+ L+++I + A +SI+ A+ ID+ NI +A+ A+ A+ L L+DG +P+ Sbjct: 63 RDALFDQIMAVAQVSIAHATVAEIDEMNILRASHVAMCRALAGLPA--DYVLVDGNLLPK 120 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 DL A A+I GD+ SLSIAAASIIAKV RDR+M +++P YG++ + GYP+A H+ Sbjct: 121 DLSLPAEALISGDARSLSIAAASIIAKVVRDRIMVDLAQQFPAYGWERNAGYPSAAHRAA 180 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 + G + HR +F+P+ N+ Sbjct: 181 LIAHGVTPHHRRSFKPVHNI 200 >gi|332686610|ref|YP_004456384.1| ribonuclease HII [Melissococcus plutonius ATCC 35311] gi|332370619|dbj|BAK21575.1| ribonuclease HII [Melissococcus plutonius ATCC 35311] Length = 260 Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 97/198 (48%), Positives = 133/198 (67%), Gaps = 5/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 FE +AM ++ +AGIDEVGRG LAGPVV AA+IL + F +NDSK++S K RE Sbjct: 64 QFEKKAM--QEGYQAIAGIDEVGRGPLAGPVVAAAVILPEDCQIFELNDSKQLSAKTRER 121 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+++I A+ I I SH+ ID+ NI++AT A+ AV NLQ IP LID ++P L Sbjct: 122 LFDEIGKKALAIGIGLVSHETIDEINIYQATKQAMIQAVANLQRIPDYLLIDAMTLP--L 179 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++IKGD+ SLSIAAASI+AKVTRDRLM ++P YGF+ + GY T +H + +K Sbjct: 180 TTIQQSIIKGDARSLSIAAASIVAKVTRDRLMVHYAAEFPGYGFEKNAGYGTKEHLEGLK 239 Query: 190 EKGPSCIHRLTFRPLRNL 207 ++G S IHR TF P++ + Sbjct: 240 KQGISPIHRKTFAPIKTM 257 >gi|229104399|ref|ZP_04235068.1| Ribonuclease [Bacillus cereus Rock3-28] gi|228679097|gb|EEL33305.1| Ribonuclease [Bacillus cereus Rock3-28] Length = 257 Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 93/194 (47%), Positives = 129/194 (66%), Gaps = 3/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +REK + +AGIDEVGRG LAGPVV AA++L N G++DSKK+S KRE Y++ Sbjct: 63 ENALREKGITYIAGIDEVGRGPLAGPVVTAAVVLPDNFYIPGLDDSKKLSEAKRERFYDE 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I + AI I + S Q ID+ NI++AT A+ AV NL P+ LID +P +P Sbjct: 123 IKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPTSIP--Q 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF H+GY T +H + I+ G Sbjct: 181 TSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPAYGFGQHMGYGTKQHLEAIEAHGV 240 Query: 194 SCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 241 LEEHRKSFAPIKDM 254 >gi|189023629|ref|YP_001934397.1| ribonuclease HII [Brucella abortus S19] gi|189019201|gb|ACD71923.1| Ribonuclease HII/HIII [Brucella abortus S19] Length = 194 Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 93/189 (49%), Positives = 131/189 (69%), Gaps = 2/189 (1%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 ++ + +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ +RE LYE I + A Sbjct: 2 KRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTAARREALYEIILTKA 61 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 I +S++S S + ID +I KA L+A+ AV L + P AL+DGR +P LPC A++K Sbjct: 62 ITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRDVPPGLPCPGSALVK 121 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIH 197 GD S+SIAAASI+AKVTRDR+M A +P YG + H GY T KH+ I+ +GP +H Sbjct: 122 GDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQKHRAAIESEGPVPGLH 181 Query: 198 RLTFRPLRN 206 R TF P++ Sbjct: 182 RYTFAPIKG 190 >gi|228940925|ref|ZP_04103484.1| Ribonuclease [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973854|ref|ZP_04134430.1| Ribonuclease [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980444|ref|ZP_04140754.1| Ribonuclease [Bacillus thuringiensis Bt407] gi|228779264|gb|EEM27521.1| Ribonuclease [Bacillus thuringiensis Bt407] gi|228785879|gb|EEM33882.1| Ribonuclease [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818761|gb|EEM64827.1| Ribonuclease [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941606|gb|AEA17502.1| ribonuclease HII [Bacillus thuringiensis serovar chinensis CT-43] Length = 257 Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 95/200 (47%), Positives = 133/200 (66%), Gaps = 6/200 (3%) Query: 12 FEL---EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 FE+ E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KR Sbjct: 57 FEMSKYENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKR 116 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E Y++I AI I + S Q ID+ NI++AT A+ AV NL P+ LID +P Sbjct: 117 ERFYDEIKVQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSYTPQHLLIDAMKLPT 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +P + +IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP+YGF+ H+GY T +H + Sbjct: 177 PIPQTS--IIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEA 234 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 I+ G HR +F P++++ Sbjct: 235 IEVHGVLEEHRKSFAPIKDM 254 >gi|49082728|gb|AAT50764.1| PA3642 [synthetic construct] Length = 202 Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 95/184 (51%), Positives = 121/184 (65%), Gaps = 4/184 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L GPVV AA+ILDP+ G+NDSKK+S +RE L+E+I A+ I+ Sbjct: 14 VAGVDEVGRGPLCGPVVTAAVILDPSRPILGLNDSKKLSEARREALFEEIREKALAWCIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AVE L IPR ALIDG P+ +PC V+KGDS Sbjct: 74 RAEVEEIDRLNILHATMLAMQRAVEGLSAIPRLALIDGNRCPKLAVPCAP--VVKGDSQV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV+RDR M + YP YG H GYPTA H + + GP+ IHR +F P Sbjct: 132 PAIAAASILAKVSRDREMVELDRVYPGYGMAGHKGYPTAVHLEALSRLGPTPIHRRSFAP 191 Query: 204 LRNL 207 +R L Sbjct: 192 VREL 195 >gi|107103156|ref|ZP_01367074.1| hypothetical protein PaerPA_01004225 [Pseudomonas aeruginosa PACS2] gi|218890133|ref|YP_002438997.1| ribonuclease HII [Pseudomonas aeruginosa LESB58] gi|254236556|ref|ZP_04929879.1| ribonuclease HII [Pseudomonas aeruginosa C3719] gi|254242340|ref|ZP_04935662.1| ribonuclease HII [Pseudomonas aeruginosa 2192] gi|226736823|sp|B7V7U6|RNH2_PSEA8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|126168487|gb|EAZ53998.1| ribonuclease HII [Pseudomonas aeruginosa C3719] gi|126195718|gb|EAZ59781.1| ribonuclease HII [Pseudomonas aeruginosa 2192] gi|218770356|emb|CAW26121.1| ribonuclease HII [Pseudomonas aeruginosa LESB58] Length = 201 Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 95/184 (51%), Positives = 121/184 (65%), Gaps = 4/184 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L GPVV AA+ILDP+ G+NDSKK+S +RE L+E+I A+ I+ Sbjct: 14 VAGVDEVGRGPLCGPVVTAAVILDPSRPILGLNDSKKLSEARREALFEEIREKALAWCIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AVE L V PR ALIDG P+ +PC V+KGDS Sbjct: 74 RAEVEEIDRLNILHATMLAMQRAVEGLSVTPRLALIDGNRCPKLAVPCAP--VVKGDSQV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV+RDR M + YP YG H GYPTA H + + GP+ IHR +F P Sbjct: 132 PAIAAASILAKVSRDREMVELDRVYPGYGMAGHKGYPTAVHLEALSRLGPTPIHRRSFAP 191 Query: 204 LRNL 207 +R L Sbjct: 192 VREL 195 >gi|163733084|ref|ZP_02140528.1| ribonuclease HII [Roseobacter litoralis Och 149] gi|161393619|gb|EDQ17944.1| ribonuclease HII [Roseobacter litoralis Och 149] Length = 209 Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 88/198 (44%), Positives = 133/198 (67%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P+FE+E VAG+DEVGRG LAGPV AA++LDP NIP G+NDSK++S K+R Sbjct: 3 PNFEMEEAAMALGALRVAGVDEVGRGPLAGPVTAAAVVLDPANIPDGLNDSKQLSAKRRN 62 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L E + SSA IS+ AS + I++HNI +A+ A+ A+ L++ P LIDG +P+ L Sbjct: 63 LLGEALASSADISVGHASVEEIEQHNILRASHIAMLRALAGLRLRPDYVLIDGSMVPKGL 122 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +A V+KGD+ LSI+AASIIAK+ RD++M +++P YG+++++GY + H ++ Sbjct: 123 NLRAQPVVKGDTRCLSISAASIIAKIARDKIMVDLAQQHPGYGWETNMGYGSKSHISALR 182 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + HR TF+P+ ++ Sbjct: 183 NLGVTPHHRRTFKPVHHM 200 >gi|306845020|ref|ZP_07477601.1| ribonuclease HII [Brucella sp. BO1] gi|306274652|gb|EFM56441.1| ribonuclease HII [Brucella sp. BO1] Length = 194 Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 93/189 (49%), Positives = 131/189 (69%), Gaps = 2/189 (1%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 ++ + +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ +RE LYE I + A Sbjct: 2 KRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTAARREALYEIILAKA 61 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 I +S++S S + ID +I KA L+A+ AV L + P AL+DGR +P LPC A++K Sbjct: 62 ITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRDVPPGLPCPGSALVK 121 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIH 197 GD S+SIAAASI+AKVTRDR+M A +P YG + H GY T KH+ I+ +GP +H Sbjct: 122 GDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYGTQKHRAAIESEGPVPGLH 181 Query: 198 RLTFRPLRN 206 R TF P++ Sbjct: 182 RYTFAPIKG 190 >gi|257884857|ref|ZP_05664510.1| ribonuclease HII [Enterococcus faecium 1,231,501] gi|257820695|gb|EEV47843.1| ribonuclease HII [Enterococcus faecium 1,231,501] Length = 254 Score = 172 bits (436), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 96/207 (46%), Positives = 132/207 (63%), Gaps = 13/207 (6%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 MFC FE + + + W +AGIDEVGRG LAGPVV AA+IL N I G+NDS Sbjct: 58 MFC--------FEKQGYA-QGHQW-IAGIDEVGRGPLAGPVVAAAVILPKNEIILGLNDS 107 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 K++S KKRE LY+++ A+ I I Q ID NI++A+ A++ AVE L ++P L Sbjct: 108 KQLSEKKRELLYQQVQEKALAIGIGIVDQQTIDDVNIYEASKLAMFQAVEKLSIVPSYLL 167 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 ID ++ DLP Q +IKGD+ S+SIAAASIIAKV RD+LM+ YP YGF + GY Sbjct: 168 IDAMTL--DLPIQQEKIIKGDARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGY 225 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRN 206 T +H + ++ +G + IHR +F P++ Sbjct: 226 GTKEHLEGLERQGITPIHRKSFAPVKK 252 >gi|228922591|ref|ZP_04085891.1| Ribonuclease [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837020|gb|EEM82361.1| Ribonuclease [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 254 Score = 172 bits (436), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 96/200 (48%), Positives = 132/200 (66%), Gaps = 6/200 (3%) Query: 12 FEL---EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 FE+ E +REK + +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KR Sbjct: 54 FEMSKYENALREKGVTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKR 113 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E Y++I AI I + S Q ID NI++AT A+ AV NL P+ LID +P Sbjct: 114 ERFYDEIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT 173 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +P + +IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP+YGF+ H+GY T +H + Sbjct: 174 PIPQTS--IIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEA 231 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 I+ G HR +F P++++ Sbjct: 232 IEVHGVLDEHRKSFAPIKDM 251 >gi|148265777|ref|YP_001232483.1| ribonuclease HII [Geobacter uraniireducens Rf4] gi|189043599|sp|A5G7Z2|RNH2_GEOUR RecName: Full=Ribonuclease HII; Short=RNase HII gi|146399277|gb|ABQ27910.1| RNase HII [Geobacter uraniireducens Rf4] Length = 216 Score = 172 bits (436), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 101/203 (49%), Positives = 130/203 (64%), Gaps = 7/203 (3%) Query: 8 ERPHF-ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISH 65 ERP E E++VR + +AGIDE GRG LAGPVV AA+IL PN + G+NDSKK+S Sbjct: 11 ERPSLLEFESLVRRQGYACIAGIDEAGRGPLAGPVVAAAVIL-PNGVELPGVNDSKKLSP 69 Query: 66 KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KR EL++ I +SA + + S+ ID+ NI +ATL A+ AV L + P LIDG S Sbjct: 70 VKRNELFDLIMASASAVGVGSSDAGLIDEINILQATLAAMKQAVSMLCIPPDYLLIDGIS 129 Query: 125 -IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P +P + + KGDS+SLSIAAASIIAKV+RDRLM ++P YGF +H GY Sbjct: 130 KVPLSIPQKT--IKKGDSLSLSIAAASIIAKVSRDRLMMDYETRFPGYGFAAHKGYGCVS 187 Query: 184 HQQVIKEKGPSCIHRLTFRPLRN 206 H I E GP IHR TFR ++ Sbjct: 188 HMAAIAELGPCAIHRKTFRGVKE 210 >gi|218233890|ref|YP_002368638.1| ribonuclease HII [Bacillus cereus B4264] gi|226736814|sp|B7HDW0|RNH2_BACC4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|218161847|gb|ACK61839.1| ribonuclease HII [Bacillus cereus B4264] Length = 257 Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 95/200 (47%), Positives = 132/200 (66%), Gaps = 6/200 (3%) Query: 12 FEL---EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 FE+ E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KR Sbjct: 57 FEMSKYENALREKGITYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKR 116 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E Y++I AI I + S Q ID NI++AT A+ AV NL P+ LID +P Sbjct: 117 ERFYDEIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +P + +IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP+YGF+ H+GY T +H + Sbjct: 177 PIPQTS--IIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEA 234 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 I+ G HR +F P++++ Sbjct: 235 IEVHGVLDEHRKSFAPIKDM 254 >gi|85705987|ref|ZP_01037083.1| ribonuclease HII [Roseovarius sp. 217] gi|85669575|gb|EAQ24440.1| ribonuclease HII [Roseovarius sp. 217] Length = 206 Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 89/198 (44%), Positives = 129/198 (65%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + +AG+DEVGRG LAGPV AA+ILDP NIP G+NDSKK+S +R Sbjct: 4 PDFSHEHTAHSQGYRRIAGVDEVGRGPLAGPVTAAAVILDPGNIPEGLNDSKKLSAARRA 63 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L I ++A +S++ AS ID+ NI +A+ A+ A+ L + P ALIDG IP L Sbjct: 64 ALCGVILATAHVSVAHASVDEIDRLNILRASHLAMERAIAGLGLAPDLALIDGNLIPRGL 123 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A A+++GD+ISLSIAAASI+AK+ RD++M +++P YG++ + GYP+ H+Q + Sbjct: 124 TLPARAIVRGDAISLSIAAASIVAKIRRDQIMWDLAQQFPGYGWERNAGYPSKSHKQALL 183 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + HR +F+P+ N+ Sbjct: 184 NLGVTPHHRRSFKPVHNI 201 >gi|306837307|ref|ZP_07470190.1| ribonuclease HII [Brucella sp. NF 2653] gi|306407620|gb|EFM63816.1| ribonuclease HII [Brucella sp. NF 2653] Length = 194 Score = 172 bits (435), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 93/183 (50%), Positives = 128/183 (69%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ +RE LYE I + AI +S++ Sbjct: 8 IAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTAARREALYEIILAKAIAVSVA 67 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S S + ID +I KA L+A+ AV L + P AL+DGR +P LPC A++KGD S+ Sbjct: 68 SLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRDVPPGLPCPGSALVKGDQRSV 127 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHRLTFRP 203 SIAAASI+AKVTRDR+M A +P YG + H GY T KH+ I+ +GP +HR TF P Sbjct: 128 SIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYGTQKHRAAIESEGPVPGLHRYTFAP 187 Query: 204 LRN 206 ++ Sbjct: 188 IKG 190 >gi|228960053|ref|ZP_04121717.1| Ribonuclease [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047524|ref|ZP_04193114.1| Ribonuclease [Bacillus cereus AH676] gi|229111308|ref|ZP_04240861.1| Ribonuclease [Bacillus cereus Rock1-15] gi|229146408|ref|ZP_04274779.1| Ribonuclease [Bacillus cereus BDRD-ST24] gi|229152036|ref|ZP_04280231.1| Ribonuclease [Bacillus cereus m1550] gi|228631385|gb|EEK88019.1| Ribonuclease [Bacillus cereus m1550] gi|228637041|gb|EEK93500.1| Ribonuclease [Bacillus cereus BDRD-ST24] gi|228672084|gb|EEL27375.1| Ribonuclease [Bacillus cereus Rock1-15] gi|228723771|gb|EEL75126.1| Ribonuclease [Bacillus cereus AH676] gi|228799569|gb|EEM46522.1| Ribonuclease [Bacillus thuringiensis serovar pakistani str. T13001] Length = 254 Score = 172 bits (435), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 95/200 (47%), Positives = 132/200 (66%), Gaps = 6/200 (3%) Query: 12 FEL---EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 FE+ E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KR Sbjct: 54 FEMSKYENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKR 113 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E Y++I AI I + S Q ID NI++AT A+ AV NL P+ LID +P Sbjct: 114 ERFYDEIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT 173 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +P + +IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP+YGF+ H+GY T +H + Sbjct: 174 PIPQTS--IIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEA 231 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 I+ G HR +F P++++ Sbjct: 232 IEVHGVLDEHRKSFAPIKDM 251 >gi|229098306|ref|ZP_04229253.1| Ribonuclease [Bacillus cereus Rock3-29] gi|229117323|ref|ZP_04246701.1| Ribonuclease [Bacillus cereus Rock1-3] gi|228666223|gb|EEL21687.1| Ribonuclease [Bacillus cereus Rock1-3] gi|228685204|gb|EEL39135.1| Ribonuclease [Bacillus cereus Rock3-29] Length = 257 Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 95/195 (48%), Positives = 131/195 (67%), Gaps = 5/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L D IP G++DSKK+S KRE Y+ Sbjct: 63 ENALREKGITYIAGIDEVGRGPLAGPVVTAAVVLPDDFYIP-GLDDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ AV NL P+ LID +P +P Sbjct: 122 EIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPTSIP-- 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPAYGFGQHMGYGTKQHLEAIEAHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|116051639|ref|YP_789522.1| ribonuclease HII [Pseudomonas aeruginosa UCBPP-PA14] gi|296387853|ref|ZP_06877328.1| ribonuclease HII [Pseudomonas aeruginosa PAb1] gi|313109047|ref|ZP_07795019.1| ribonuclease HII [Pseudomonas aeruginosa 39016] gi|122260782|sp|Q02RB4|RNH2_PSEAB RecName: Full=Ribonuclease HII; Short=RNase HII gi|115586860|gb|ABJ12875.1| ribonuclease HII [Pseudomonas aeruginosa UCBPP-PA14] gi|310881521|gb|EFQ40115.1| ribonuclease HII [Pseudomonas aeruginosa 39016] Length = 201 Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 94/183 (51%), Positives = 120/183 (65%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L GPVV AA+ILDP+ G+NDSKK+S +RE L+E+I A+ I+ Sbjct: 14 VAGVDEVGRGPLCGPVVTAAVILDPSRPILGLNDSKKLSEARREALFEEIREKALAWCIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AVE L V PR ALIDG P+ L + V+KGDS Sbjct: 74 RAEVEEIDRLNILHATMLAMQRAVEGLSVTPRLALIDGNRCPK-LAVPSAPVVKGDSQVP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV+RDR M + YP YG H GYPTA H + + GP+ IHR +F P+ Sbjct: 133 AIAAASILAKVSRDREMVELDRVYPGYGMAGHKGYPTAVHLEALSRLGPTPIHRRSFAPV 192 Query: 205 RNL 207 R L Sbjct: 193 REL 195 >gi|309804177|ref|ZP_07698255.1| ribonuclease HII [Lactobacillus iners LactinV 11V1-d] gi|308163760|gb|EFO66029.1| ribonuclease HII [Lactobacillus iners LactinV 11V1-d] Length = 250 Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 97/203 (47%), Positives = 128/203 (63%), Gaps = 8/203 (3%) Query: 8 ERPHFELEAMVR-EKNMW----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62 E+ E E EK W VAG+DEVGRG LAGPVV AA+ILD N +NDSKK Sbjct: 46 EKAFLEFETRFSYEKKFWCQNKLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKK 105 Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 ++ KKR EL+ I A+ +S+ A++ IDK NI++A A+ AV+ L+V P + L+D Sbjct: 106 LTPKKRNELFPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVD 165 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 +P DLP +I+GDS S SIAAASI+AKV RDRLM + YP+Y F + GY T Sbjct: 166 AMDVPVDLP--QLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGT 223 Query: 182 AKHQQVIKEKGPSCIHRLTFRPL 204 AKH +K+ GP+ IHR +F P+ Sbjct: 224 AKHLSALKQYGPTPIHRFSFEPV 246 >gi|296504332|ref|YP_003666032.1| ribonuclease HII [Bacillus thuringiensis BMB171] gi|296325384|gb|ADH08312.1| ribonuclease HII [Bacillus thuringiensis BMB171] Length = 257 Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 95/200 (47%), Positives = 132/200 (66%), Gaps = 6/200 (3%) Query: 12 FEL---EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 FE+ E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KR Sbjct: 57 FEMSKYENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKR 116 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E Y++I AI I + S Q ID NI++AT A+ AV NL P+ LID +P Sbjct: 117 ERFYDEIKVQAIAIGVGIVSPQIIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +P + +IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP+YGF+ H+GY T +H + Sbjct: 177 PIPQTS--IIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEA 234 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 I+ G HR +F P++++ Sbjct: 235 IEVHGVLDEHRNSFAPIKDM 254 >gi|75676782|ref|YP_319203.1| ribonuclease HII/HIII [Nitrobacter winogradskyi Nb-255] gi|97189098|sp|Q3SPE0|RNH2_NITWN RecName: Full=Ribonuclease HII; Short=RNase HII gi|74421652|gb|ABA05851.1| RNase HII [Nitrobacter winogradskyi Nb-255] Length = 258 Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 94/195 (48%), Positives = 127/195 (65%), Gaps = 1/195 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + E +WPVAG DEVGRG LAGPVV AA++LDPN+IP GI+DSK+++ +RE Sbjct: 34 PSFMRERDLMECGVWPVAGCDEVGRGPLAGPVVAAAVVLDPNHIPKGIDDSKRLTAARRE 93 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 EL+E+I ++A +++ A + ID+ NI +A+L A+ AV L P+ +DGR D+ Sbjct: 94 ELFEEIVATASFAVACAPIERIDRDNILRASLWALARAVHALPDTPKHVFVDGRDR-IDI 152 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C VI GD + LSIAAASI+AKVTRDRLM + P YGF++H GY H + + Sbjct: 153 ACACEPVIGGDGLVLSIAAASIVAKVTRDRLMCKLARDCPGYGFETHKGYAVPGHLEALG 212 Query: 190 EKGPSCIHRLTFRPL 204 GPS HR F P+ Sbjct: 213 RLGPSSHHRSFFAPV 227 >gi|325912821|ref|ZP_08175199.1| ribonuclease HII [Lactobacillus iners UPII 60-B] gi|325477814|gb|EGC80948.1| ribonuclease HII [Lactobacillus iners UPII 60-B] Length = 250 Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 97/203 (47%), Positives = 128/203 (63%), Gaps = 8/203 (3%) Query: 8 ERPHFELEAMVR-EKNMW----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62 E+ E E EK W VAG+DEVGRG LAGPVV AA+ILD N +NDSKK Sbjct: 46 EKAFLEFETRFSYEKEFWCQNKLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKK 105 Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 ++ KKR EL+ I A+ +S+ A++ IDK NI++A A+ AV+ L+V P + L+D Sbjct: 106 LTPKKRNELFPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVD 165 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 +P DLP +I+GDS S SIAAASI+AKV RDRLM + YP+Y F + GY T Sbjct: 166 AMDVPVDLP--QLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGT 223 Query: 182 AKHQQVIKEKGPSCIHRLTFRPL 204 AKH +K+ GP+ IHR +F P+ Sbjct: 224 AKHLSALKQYGPTPIHRFSFEPV 246 >gi|329921301|ref|ZP_08277739.1| ribonuclease HII [Lactobacillus iners SPIN 1401G] gi|328934593|gb|EGG31097.1| ribonuclease HII [Lactobacillus iners SPIN 1401G] Length = 250 Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 97/203 (47%), Positives = 128/203 (63%), Gaps = 8/203 (3%) Query: 8 ERPHFELEAMVR-EKNMW----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62 E+ E E EK W VAG+DEVGRG LAGPVV AA+ILD N +NDSKK Sbjct: 46 EKAFLEFETRFSYEKEFWCQNKLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKK 105 Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 ++ KKR EL+ I A+ +S+ A++ IDK NI++A A+ AV+ L+V P + L+D Sbjct: 106 LTPKKRNELFPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVD 165 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 +P DLP +I+GDS S SIAAASI+AKV RDRLM + YP+Y F + GY T Sbjct: 166 AMDVPVDLP--QLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGT 223 Query: 182 AKHQQVIKEKGPSCIHRLTFRPL 204 AKH +K+ GP+ IHR +F P+ Sbjct: 224 AKHLSALKQYGPTPIHRFSFEPV 246 >gi|229071335|ref|ZP_04204558.1| Ribonuclease [Bacillus cereus F65185] gi|229180113|ref|ZP_04307457.1| Ribonuclease [Bacillus cereus 172560W] gi|228603322|gb|EEK60799.1| Ribonuclease [Bacillus cereus 172560W] gi|228711789|gb|EEL63741.1| Ribonuclease [Bacillus cereus F65185] Length = 254 Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 95/200 (47%), Positives = 131/200 (65%), Gaps = 6/200 (3%) Query: 12 FEL---EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 FE+ E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KR Sbjct: 54 FEMSKYENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKR 113 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E Y++I AI I + S Q ID NI++AT A+ AV NL P+ LID +P Sbjct: 114 ERFYDEIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT 173 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +P + +IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + Sbjct: 174 PIPQTS--IIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPQYGFEQHMGYGTKQHLEA 231 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 I+ G HR +F P++++ Sbjct: 232 IQVHGVLDEHRKSFAPIKDM 251 >gi|229061440|ref|ZP_04198785.1| Ribonuclease [Bacillus cereus AH603] gi|228717863|gb|EEL69511.1| Ribonuclease [Bacillus cereus AH603] Length = 257 Score = 171 bits (433), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 96/205 (46%), Positives = 131/205 (63%), Gaps = 7/205 (3%) Query: 8 ERPHF----ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 ER F + E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+ Sbjct: 52 ERGKFLEMSKYENELREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKL 111 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S KRE Y++I AI I + S Q ID+ NI++AT A+ AV NL P LID Sbjct: 112 SEAKRERFYDEIKEHAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPEYLLIDA 171 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 +P +P ++IKGD+ S+SI+AASIIAKVTRDR+M+ KYP YGF+ H+GY T Sbjct: 172 MKLPTSIP--QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGGKYPAYGFEQHMGYGTK 229 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 +H + I+ G HR +F P++++ Sbjct: 230 QHLEAIEVHGVLEEHRKSFAPIKDM 254 >gi|228954113|ref|ZP_04116142.1| Ribonuclease [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229081092|ref|ZP_04213602.1| Ribonuclease [Bacillus cereus Rock4-2] gi|228702136|gb|EEL54612.1| Ribonuclease [Bacillus cereus Rock4-2] gi|228805679|gb|EEM52269.1| Ribonuclease [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 257 Score = 171 bits (433), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 95/200 (47%), Positives = 131/200 (65%), Gaps = 6/200 (3%) Query: 12 FEL---EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 FE+ E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KR Sbjct: 57 FEMSKYENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKR 116 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E Y++I AI I + S Q ID NI++AT A+ AV NL P+ LID +P Sbjct: 117 ERFYDEIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +P ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + Sbjct: 177 PIP--QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPQYGFEQHMGYGTKQHLEA 234 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 I+ G HR +F P++++ Sbjct: 235 IQVHGVLDEHRKSFAPIKDM 254 >gi|312871434|ref|ZP_07731529.1| ribonuclease HII [Lactobacillus iners LEAF 3008A-a] gi|312872310|ref|ZP_07732380.1| ribonuclease HII [Lactobacillus iners LEAF 2062A-h1] gi|311092133|gb|EFQ50507.1| ribonuclease HII [Lactobacillus iners LEAF 2062A-h1] gi|311093087|gb|EFQ51436.1| ribonuclease HII [Lactobacillus iners LEAF 3008A-a] Length = 250 Score = 171 bits (433), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 97/203 (47%), Positives = 128/203 (63%), Gaps = 8/203 (3%) Query: 8 ERPHFELEAMVR-EKNMW----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62 E+ E E EK W VAG+DEVGRG LAGPVV AA+ILD N +NDSKK Sbjct: 46 EKAFLEFETRFSYEKEFWCQKKLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKK 105 Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 ++ KKR EL+ I A+ +S+ A++ IDK NI++A A+ AV+ L+V P + L+D Sbjct: 106 LTPKKRNELFPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVD 165 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 +P DLP +I+GDS S SIAAASI+AKV RDRLM + YP+Y F + GY T Sbjct: 166 AMDVPVDLP--QLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGT 223 Query: 182 AKHQQVIKEKGPSCIHRLTFRPL 204 AKH +K+ GP+ IHR +F P+ Sbjct: 224 AKHLSALKQYGPTPIHRFSFEPV 246 >gi|309809305|ref|ZP_07703174.1| ribonuclease HII [Lactobacillus iners SPIN 2503V10-D] gi|325911988|ref|ZP_08174390.1| ribonuclease HII [Lactobacillus iners UPII 143-D] gi|308170418|gb|EFO72442.1| ribonuclease HII [Lactobacillus iners SPIN 2503V10-D] gi|325476173|gb|EGC79337.1| ribonuclease HII [Lactobacillus iners UPII 143-D] Length = 250 Score = 171 bits (433), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 97/203 (47%), Positives = 128/203 (63%), Gaps = 8/203 (3%) Query: 8 ERPHFELEAMVR-EKNMW----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62 E+ E E EK W VAG+DEVGRG LAGPVV AA+ILD N +NDSKK Sbjct: 46 EKAFLEFETRFSYEKEFWCQNKLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKK 105 Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 ++ KKR EL+ I A+ +S+ A++ IDK NI++A A+ AV+ L+V P + L+D Sbjct: 106 LTPKKRNELFPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVD 165 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 +P DLP +I+GDS S SIAAASI+AKV RDRLM + YP+Y F + GY T Sbjct: 166 AMDVPVDLP--QLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGT 223 Query: 182 AKHQQVIKEKGPSCIHRLTFRPL 204 AKH +K+ GP+ IHR +F P+ Sbjct: 224 AKHLSALKQYGPTPIHRFSFEPV 246 >gi|30021925|ref|NP_833556.1| ribonuclease HII [Bacillus cereus ATCC 14579] gi|39932341|sp|Q819W9|RNH2_BACCR RecName: Full=Ribonuclease HII; Short=RNase HII gi|29897481|gb|AAP10757.1| Ribonuclease HII [Bacillus cereus ATCC 14579] Length = 257 Score = 171 bits (433), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 95/200 (47%), Positives = 131/200 (65%), Gaps = 6/200 (3%) Query: 12 FEL---EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 FE+ E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KR Sbjct: 57 FEMSKYENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKR 116 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E Y++I AI I + S Q ID NI++AT A+ AV NL P+ LID +P Sbjct: 117 ERFYDEIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +P + +IKGD+ S+SI+AASIIAKVTRDR+M+ KYP+YGF+ H+GY T +H + Sbjct: 177 PIPQTS--IIKGDAKSVSISAASIIAKVTRDRMMKELGGKYPEYGFEQHMGYGTKQHLEA 234 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 I+ G HR +F P++++ Sbjct: 235 IEVHGVLDEHRKSFAPIKDM 254 >gi|328957389|ref|YP_004374775.1| ribonuclease HII [Carnobacterium sp. 17-4] gi|328673713|gb|AEB29759.1| ribonuclease HII [Carnobacterium sp. 17-4] Length = 257 Score = 171 bits (432), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 99/201 (49%), Positives = 127/201 (63%), Gaps = 3/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 ++ ++E E+ VAGIDEVGRG LAGPVV AA+IL + INDSK++S K Sbjct: 57 QQEMLQIEQFFWEQGTQFVAGIDEVGRGPLAGPVVAAAVILPQDFNVLEINDSKQLSSAK 116 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE L+++I SA+ I I HQ IDK NI++AT A+ AVE L P LID +P Sbjct: 117 REVLFDQIQESALAIGIGIKDHQVIDKVNIYQATKLAMIEAVEQLPQQPEQLLIDAMHLP 176 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 +P ++F IKGDS SLSIAAASIIAKVTRDR+M YP YGF + GY T H + Sbjct: 177 ITIPQESF--IKGDSKSLSIAAASIIAKVTRDRMMAEYDTLYPGYGFSKNAGYGTKIHLE 234 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 +++ G IHR TF P++NL Sbjct: 235 GLEKHGICPIHRKTFAPVKNL 255 >gi|152983475|ref|YP_001346881.1| ribonuclease HII [Pseudomonas aeruginosa PA7] gi|166226639|sp|A6V1E6|RNH2_PSEA7 RecName: Full=Ribonuclease HII; Short=RNase HII gi|150958633|gb|ABR80658.1| ribonuclease HII [Pseudomonas aeruginosa PA7] Length = 201 Score = 171 bits (432), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 93/183 (50%), Positives = 119/183 (65%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L GPVV AA+ILDP+ G+NDSKK+S +RE L+E+I A+ ++ Sbjct: 14 VAGVDEVGRGPLCGPVVTAAVILDPSRPILGLNDSKKLSEARREALFEEIREKALAWCVA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AVE L V PR ALIDG P L + V+KGDS Sbjct: 74 RAEVEEIDRLNILHATMLAMQRAVEGLSVTPRLALIDGNRCPR-LAVPSAPVVKGDSQVP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV+RDR M + YP YG H GYPTA H + + GP+ IHR +F P+ Sbjct: 133 AIAAASILAKVSRDREMVELDRLYPGYGMAGHKGYPTAVHLEALSRLGPTPIHRRSFAPV 192 Query: 205 RNL 207 R L Sbjct: 193 REL 195 >gi|259500645|ref|ZP_05743547.1| ribonuclease HII [Lactobacillus iners DSM 13335] gi|302191334|ref|ZP_07267588.1| ribonuclease HII [Lactobacillus iners AB-1] gi|259168029|gb|EEW52524.1| ribonuclease HII [Lactobacillus iners DSM 13335] Length = 250 Score = 171 bits (432), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 97/203 (47%), Positives = 128/203 (63%), Gaps = 8/203 (3%) Query: 8 ERPHFELEAMVR-EKNMW----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62 E+ E E EK W VAG+DEVGRG LAGPVV AA+ILD N +NDSKK Sbjct: 46 EKAFLEFETRFSYEKEFWCQKKLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKK 105 Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 ++ KKR EL+ I A+ +S+ A++ IDK NI++A A+ AV+ L+V P + L+D Sbjct: 106 LTPKKRNELFPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVD 165 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 +P DLP +I+GDS S SIAAASI+AKV RDRLM + YP+Y F + GY T Sbjct: 166 AMDVPIDLP--QLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGT 223 Query: 182 AKHQQVIKEKGPSCIHRLTFRPL 204 AKH +K+ GP+ IHR +F P+ Sbjct: 224 AKHLSALKQYGPTPIHRFSFEPV 246 >gi|149912480|ref|ZP_01901014.1| Ribonuclease H [Roseobacter sp. AzwK-3b] gi|149812886|gb|EDM72712.1| Ribonuclease H [Roseobacter sp. AzwK-3b] Length = 211 Score = 171 bits (432), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 91/198 (45%), Positives = 127/198 (64%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F LE VAG+DEVGRG LAGPV AA++LD IP G+NDSK+++ K+R Sbjct: 5 PDFTLETAAHAAGHLRVAGVDEVGRGPLAGPVTAAAVVLDILRIPEGLNDSKRLTAKRRA 64 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L++ I A +SI+ AS + IDK NI +A+ A+ A+ L P ALIDG IP L Sbjct: 65 VLHDAILGMAEVSIAHASVEEIDKLNILRASHLAMERAIAGLATPPDMALIDGNLIPRGL 124 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A AV+KGD SLSIAAASI+AK+TRDR+M +++P YG++++ GYP+ H ++ Sbjct: 125 QIPAQAVVKGDGKSLSIAAASIVAKITRDRIMWDLAQQFPGYGWETNAGYPSKSHIAALQ 184 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + HR +F+P+ N+ Sbjct: 185 NIGLTPHHRRSFKPVHNI 202 >gi|83941807|ref|ZP_00954269.1| ribonuclease HII [Sulfitobacter sp. EE-36] gi|83847627|gb|EAP85502.1| ribonuclease HII [Sulfitobacter sp. EE-36] Length = 238 Score = 171 bits (432), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 87/199 (43%), Positives = 131/199 (65%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P FE E + VAG+DEVGRG LAGPV AA++LDP+ IP G+NDSKK++ R Sbjct: 35 KPDFEFERAAHARGFERVAGVDEVGRGPLAGPVTAAAVVLDPDRIPEGLNDSKKLTKTAR 94 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E LYE++ A +S++ AS + I++ NI +A+ A+ A+E L+ ALIDG IP D Sbjct: 95 ERLYEELLQVADVSVAHASVEEIEELNILRASHLAMLRALEGLKTPADYALIDGNMIPRD 154 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L A V+KGD+ S SI+AASI AK+ RD +M +++P YG+++++GY + KH + + Sbjct: 155 LTLPAETVVKGDARSQSISAASIAAKICRDCVMLSLAQQHPGYGWETNMGYGSKKHMEAL 214 Query: 189 KEKGPSCIHRLTFRPLRNL 207 ++ G + HR F+P+ N+ Sbjct: 215 QKIGVTPHHRRLFKPVHNM 233 >gi|229129113|ref|ZP_04258086.1| Ribonuclease [Bacillus cereus BDRD-Cer4] gi|228654350|gb|EEL10215.1| Ribonuclease [Bacillus cereus BDRD-Cer4] Length = 254 Score = 171 bits (432), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 95/200 (47%), Positives = 131/200 (65%), Gaps = 6/200 (3%) Query: 12 FEL---EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 FE+ E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KR Sbjct: 54 FEMSKYENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKR 113 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E Y++I AI I + S Q ID NI++AT A+ AV NL P+ LID +P Sbjct: 114 ERFYDEIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT 173 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +P + +IKGD+ S+SI+AASIIAKVTRDR+M+ KYP+YGF+ H+GY T +H + Sbjct: 174 PIPQTS--IIKGDAKSVSISAASIIAKVTRDRMMKELGGKYPEYGFEQHMGYGTKQHLEA 231 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 I+ G HR +F P++++ Sbjct: 232 IEVHGVLDEHRKSFAPIKDM 251 >gi|312898597|ref|ZP_07757987.1| ribonuclease HII [Megasphaera micronuciformis F0359] gi|310620516|gb|EFQ04086.1| ribonuclease HII [Megasphaera micronuciformis F0359] Length = 266 Score = 171 bits (432), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 92/201 (45%), Positives = 135/201 (67%), Gaps = 8/201 (3%) Query: 14 LEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 L+ M+R E+ ++ +AGIDE GRG +AGPV +AA+IL + +G+NDSKK+SHK+ Sbjct: 59 LKGMLRYEEKLYAKGYRYIAGIDEAGRGPVAGPVTIAAVILPIRPLIYGLNDSKKVSHKR 118 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 REEL++ I + AI +S + S ID+++I+ AT A+Y AV+ L + P++ LID +P Sbjct: 119 REELFDTIMNEAIAVSCINFSEADIDRYDIYHATQRAMYTAVKTLDISPQAVLIDAMPLP 178 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 DL +++ GD+ S SIAAASIIAKVTRDR+M ++YP YGF H GY T H+ Sbjct: 179 -DLEIYHESIVGGDAQSQSIAAASIIAKVTRDRIMEEYDRQYPRYGFAEHKGYLTQTHKD 237 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + GP IHR +F P++++ Sbjct: 238 AIAQYGPCPIHRKSFEPVKSM 258 >gi|229013020|ref|ZP_04170185.1| Ribonuclease [Bacillus mycoides DSM 2048] gi|229134645|ref|ZP_04263454.1| Ribonuclease [Bacillus cereus BDRD-ST196] gi|229168576|ref|ZP_04296299.1| Ribonuclease [Bacillus cereus AH621] gi|228614982|gb|EEK72084.1| Ribonuclease [Bacillus cereus AH621] gi|228648691|gb|EEL04717.1| Ribonuclease [Bacillus cereus BDRD-ST196] gi|228748274|gb|EEL98134.1| Ribonuclease [Bacillus mycoides DSM 2048] Length = 257 Score = 170 bits (431), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 96/205 (46%), Positives = 131/205 (63%), Gaps = 7/205 (3%) Query: 8 ERPHF----ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 ER F + E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+ Sbjct: 52 EREKFLEMSKYENELREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKL 111 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S KRE Y++I AI I + S Q ID+ NI++AT A+ AV NL P LID Sbjct: 112 SEAKRERFYDEIKEHAIAIGVGIISPQVIDEINIYQATKQAMLDAVANLSCTPEYLLIDA 171 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 +P +P ++IKGD+ S+SI+AASIIAKVTRDR+M+ KYP YGF+ H+GY T Sbjct: 172 MKLPTSIP--QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGGKYPAYGFEQHMGYGTK 229 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 +H + I+ G HR +F P++++ Sbjct: 230 QHLEAIEVHGVLEEHRKSFAPIKDM 254 >gi|241890105|ref|ZP_04777403.1| ribonuclease HII [Gemella haemolysans ATCC 10379] gi|241863727|gb|EER68111.1| ribonuclease HII [Gemella haemolysans ATCC 10379] Length = 258 Score = 170 bits (431), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 92/183 (50%), Positives = 123/183 (67%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG LAGPVV AA+IL +N G+NDSKK+S KKREELYE+I A+ +I Sbjct: 70 ICGIDEVGRGPLAGPVVAAAVILKKDNYFEGLNDSKKLSEKKREELYEQIRKEAVAYAIC 129 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + I+K+NI+ A A+ AVE L+V P LID E+ P F+++KGD S+ Sbjct: 130 EVDNIEIEKYNIYNAARIAMQRAVEKLEVKPDFLLIDAMPF-ENYPIPNFSMVKGDEKSV 188 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAAS+IAKV RD LM+ KKYP Y F+++ GY T KH + +KE G + IHR F P+ Sbjct: 189 SIAAASVIAKVYRDNLMKEYAKKYPHYDFENNAGYGTKKHLEGLKEHGVTPIHRRDFEPI 248 Query: 205 RNL 207 +++ Sbjct: 249 KSM 251 >gi|295706298|ref|YP_003599373.1| ribonuclease HII [Bacillus megaterium DSM 319] gi|294803957|gb|ADF41023.1| ribonuclease HII [Bacillus megaterium DSM 319] Length = 255 Score = 170 bits (431), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 92/198 (46%), Positives = 128/198 (64%), Gaps = 8/198 (4%) Query: 15 EAMVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 E M E ++ +AG+DEVGRG LAGPVV AA+IL P+ G+ DSKK+S KRE Sbjct: 57 EMMAYENELYNQGATYIAGVDEVGRGPLAGPVVAAAVILPPDFFLPGLTDSKKLSEAKRE 116 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E YE+I SA+ I I + ID NI++AT A+ A+E L V P LID +P Sbjct: 117 EFYEEICKSAVAIGIGIIDAEVIDSINIYEATKKAMTEAIELLAVQPDELLIDAMKLP-- 174 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 +P ++IKGD+ S+SIAA+S+IAKVTRDR+M+ ++YP YGF+ H+GY T +H + I Sbjct: 175 VPISQQSIIKGDATSISIAASSVIAKVTRDRMMKELGERYPAYGFEKHMGYGTKQHLEAI 234 Query: 189 KEKGPSCIHRLTFRPLRN 206 ++ G HR +F P++N Sbjct: 235 QQYGILPEHRRSFAPIKN 252 >gi|167624881|ref|YP_001675175.1| ribonuclease HII [Shewanella halifaxensis HAW-EB4] gi|189043659|sp|B0TP69|RNH2_SHEHH RecName: Full=Ribonuclease HII; Short=RNase HII gi|167354903|gb|ABZ77516.1| Ribonuclease H [Shewanella halifaxensis HAW-EB4] Length = 203 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 92/180 (51%), Positives = 120/180 (66%), Gaps = 2/180 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKRE L+E+I A+ +S+ S Sbjct: 21 AGVDEVGRGPLIGNVVTAAVILDPNNPIEGLNDSKKLSEKKRELLFEQIQQKALSVSVGS 80 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A+ ID+ NI AT+ A+ AV L + P S L+DG P D ++ A+IKGD + + Sbjct: 81 ATPAEIDELNILHATMLAMQRAVAGLNIKPTSVLVDGNRTP-DFGVESHAIIKGDGLIDA 139 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASIIAKV RDR M +YP+YGFD H GYPT H + + + G HR +FRP+R Sbjct: 140 ISAASIIAKVVRDREMDALALQYPEYGFDKHKGYPTKAHFEALTQHGVLPEHRKSFRPVR 199 >gi|163941575|ref|YP_001646459.1| ribonuclease HII [Bacillus weihenstephanensis KBAB4] gi|229564282|sp|A9VT75|RNH2_BACWK RecName: Full=Ribonuclease HII; Short=RNase HII gi|163863772|gb|ABY44831.1| Ribonuclease H [Bacillus weihenstephanensis KBAB4] Length = 257 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 96/205 (46%), Positives = 131/205 (63%), Gaps = 7/205 (3%) Query: 8 ERPHF----ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 ER F + E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+ Sbjct: 52 EREKFLEMSKYENELREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKL 111 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S KRE Y++I AI I + S Q ID+ NI++AT A+ AV NL P LID Sbjct: 112 SEAKRERFYDEIKDHAIAIGVGIISPQVIDEINIYQATKQAMLDAVANLSCTPEYLLIDA 171 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 +P +P ++IKGD+ S+SI+AASIIAKVTRDR+M+ KYP YGF+ H+GY T Sbjct: 172 MKLPTSIP--QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGGKYPAYGFEQHMGYGTK 229 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 +H + I+ G HR +F P++++ Sbjct: 230 QHLEAIEVHGVLEEHRKSFAPIKDM 254 >gi|257878020|ref|ZP_05657673.1| ribonuclease HII [Enterococcus faecium 1,230,933] gi|257881194|ref|ZP_05660847.1| ribonuclease HII [Enterococcus faecium 1,231,502] gi|257889781|ref|ZP_05669434.1| ribonuclease HII [Enterococcus faecium 1,231,410] gi|257892282|ref|ZP_05671935.1| ribonuclease HII [Enterococcus faecium 1,231,408] gi|258616491|ref|ZP_05714261.1| ribonuclease HII [Enterococcus faecium DO] gi|260559070|ref|ZP_05831256.1| ribonuclease HII [Enterococcus faecium C68] gi|261207604|ref|ZP_05922289.1| ribonuclease HII [Enterococcus faecium TC 6] gi|289565116|ref|ZP_06445569.1| ribonuclease HII [Enterococcus faecium D344SRF] gi|293556764|ref|ZP_06675327.1| ribonuclease HII [Enterococcus faecium E1039] gi|293563422|ref|ZP_06677871.1| ribonuclease HII [Enterococcus faecium E1162] gi|293568165|ref|ZP_06679501.1| ribonuclease HII (RNase HII) [Enterococcus faecium E1071] gi|294614822|ref|ZP_06694717.1| ribonuclease HII [Enterococcus faecium E1636] gi|294617501|ref|ZP_06697132.1| ribonuclease HII [Enterococcus faecium E1679] gi|294622303|ref|ZP_06701346.1| ribonuclease HII [Enterococcus faecium U0317] gi|314938032|ref|ZP_07845342.1| ribonuclease HII [Enterococcus faecium TX0133a04] gi|314941982|ref|ZP_07848843.1| ribonuclease HII [Enterococcus faecium TX0133C] gi|314948765|ref|ZP_07852137.1| ribonuclease HII [Enterococcus faecium TX0082] gi|314951783|ref|ZP_07854822.1| ribonuclease HII [Enterococcus faecium TX0133A] gi|314991810|ref|ZP_07857268.1| ribonuclease HII [Enterococcus faecium TX0133B] gi|314995851|ref|ZP_07860938.1| ribonuclease HII [Enterococcus faecium TX0133a01] gi|257812248|gb|EEV41006.1| ribonuclease HII [Enterococcus faecium 1,230,933] gi|257816852|gb|EEV44180.1| ribonuclease HII [Enterococcus faecium 1,231,502] gi|257826141|gb|EEV52767.1| ribonuclease HII [Enterococcus faecium 1,231,410] gi|257828661|gb|EEV55268.1| ribonuclease HII [Enterococcus faecium 1,231,408] gi|260074827|gb|EEW63143.1| ribonuclease HII [Enterococcus faecium C68] gi|260077987|gb|EEW65693.1| ribonuclease HII [Enterococcus faecium TC 6] gi|289163123|gb|EFD10970.1| ribonuclease HII [Enterococcus faecium D344SRF] gi|291589155|gb|EFF20967.1| ribonuclease HII (RNase HII) [Enterococcus faecium E1071] gi|291592284|gb|EFF23898.1| ribonuclease HII [Enterococcus faecium E1636] gi|291596241|gb|EFF27503.1| ribonuclease HII [Enterococcus faecium E1679] gi|291598195|gb|EFF29293.1| ribonuclease HII [Enterococcus faecium U0317] gi|291601096|gb|EFF31385.1| ribonuclease HII [Enterococcus faecium E1039] gi|291604683|gb|EFF34168.1| ribonuclease HII [Enterococcus faecium E1162] gi|313589955|gb|EFR68800.1| ribonuclease HII [Enterococcus faecium TX0133a01] gi|313593621|gb|EFR72466.1| ribonuclease HII [Enterococcus faecium TX0133B] gi|313596062|gb|EFR74907.1| ribonuclease HII [Enterococcus faecium TX0133A] gi|313599234|gb|EFR78079.1| ribonuclease HII [Enterococcus faecium TX0133C] gi|313642607|gb|EFS07187.1| ribonuclease HII [Enterococcus faecium TX0133a04] gi|313644831|gb|EFS09411.1| ribonuclease HII [Enterococcus faecium TX0082] Length = 255 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 96/207 (46%), Positives = 131/207 (63%), Gaps = 13/207 (6%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 MFC FE + + + W +AGIDEVGRG LAGPVV AA+IL N I G+NDS Sbjct: 58 MFC--------FEKQGYA-QGHQW-IAGIDEVGRGPLAGPVVAAAVILPKNEIILGLNDS 107 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 K++S KKRE LY+++ A+ I I Q ID NI++A+ A+ AVE L ++P L Sbjct: 108 KQLSEKKRELLYQQVQEKALAIGIGIVDQQTIDDVNIYEASKLAMIQAVEKLSIVPSYLL 167 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 ID ++ DLP Q +IKGD+ S+SIAAASIIAKV RD+LM+ YP YGF + GY Sbjct: 168 IDAMTL--DLPIQQEKIIKGDARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGY 225 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRN 206 T +H + ++ +G + IHR +F P++ Sbjct: 226 GTKEHLEGLERQGITPIHRKSFAPVKK 252 >gi|254476664|ref|ZP_05090050.1| ribonuclease HII [Ruegeria sp. R11] gi|214030907|gb|EEB71742.1| ribonuclease HII [Ruegeria sp. R11] Length = 205 Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 94/200 (47%), Positives = 130/200 (65%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P + LEA + +AG+DEVGRG LAGPV AA+ILDP+ IP G+NDSKK+S KK Sbjct: 2 EHPDYSLEAAAIARGHRRIAGVDEVGRGPLAGPVTAAAVILDPDAIPDGLNDSKKLSAKK 61 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 RE + I SA +SI+ AS + ID NI +A+ A+ AV L P LIDG IP+ Sbjct: 62 REAVEADIFQSAEVSIAHASVEEIDSLNILRASHLAMERAVAALDPPPDYLLIDGNLIPK 121 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + A VIKGD S+SIAAASI+AK+ RDR+M +++P YG+D + GYP+ +H++ Sbjct: 122 GVQQPAEFVIKGDGKSVSIAAASIVAKLARDRIMVDLAQQFPGYGWDKNAGYPSKQHREA 181 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 + E G + HR +F+P+ + Sbjct: 182 LIEIGVTPHHRRSFKPVHKI 201 >gi|309805705|ref|ZP_07699745.1| ribonuclease HII [Lactobacillus iners LactinV 09V1-c] gi|309806745|ref|ZP_07700739.1| ribonuclease HII [Lactobacillus iners LactinV 03V1-b] gi|312873998|ref|ZP_07734034.1| ribonuclease HII [Lactobacillus iners LEAF 2052A-d] gi|312875510|ref|ZP_07735513.1| ribonuclease HII [Lactobacillus iners LEAF 2053A-b] gi|315653520|ref|ZP_07906441.1| ribonuclease HII [Lactobacillus iners ATCC 55195] gi|308164958|gb|EFO67201.1| ribonuclease HII [Lactobacillus iners LactinV 09V1-c] gi|308166860|gb|EFO69045.1| ribonuclease HII [Lactobacillus iners LactinV 03V1-b] gi|311089021|gb|EFQ47462.1| ribonuclease HII [Lactobacillus iners LEAF 2053A-b] gi|311090547|gb|EFQ48955.1| ribonuclease HII [Lactobacillus iners LEAF 2052A-d] gi|315489211|gb|EFU78852.1| ribonuclease HII [Lactobacillus iners ATCC 55195] Length = 250 Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 94/190 (49%), Positives = 124/190 (65%), Gaps = 7/190 (3%) Query: 20 EKNMW----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 EK W VAG+DEVGRG LAGPVV AA+ILD N +NDSKK++ KKR EL+ I Sbjct: 59 EKEFWCQNKLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKKLTPKKRNELFPMI 118 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A+ +S+ A++ IDK NI++A A+ AV+ L+V P + L+D +P DLP Sbjct: 119 LDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVDAMDVPVDLP--QL 176 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +I+GDS S SIAAASI+AKV RDRLM + YP+Y F + GY TAKH +K+ GP+ Sbjct: 177 KLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGTAKHLSALKQYGPT 236 Query: 195 CIHRLTFRPL 204 IHR +F P+ Sbjct: 237 PIHRFSFEPV 246 >gi|83855284|ref|ZP_00948814.1| ribonuclease HII [Sulfitobacter sp. NAS-14.1] gi|83843127|gb|EAP82294.1| ribonuclease HII [Sulfitobacter sp. NAS-14.1] Length = 205 Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 88/199 (44%), Positives = 131/199 (65%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P FE E + VAG+DEVGRG LAGPV AA++LDP+ IP G+NDSKK++ R Sbjct: 2 KPDFEFERAAHARGFERVAGVDEVGRGPLAGPVTAAAVVLDPDRIPEGLNDSKKLTKPAR 61 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E LYE++ A +S++ AS + I++ NI +A+ A+ A+E L+ ALIDG IP D Sbjct: 62 ERLYEELLQVADVSVAHASVEEIEELNILRASHLAMLRALEGLKTPADYALIDGNVIPRD 121 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L A VIKGD+ S SI+AASI AK+ RD +M +++P YG+++++GY + KH + + Sbjct: 122 LTLPAEPVIKGDARSQSISAASIAAKICRDCVMLSLAQQHPGYGWETNMGYGSKKHMEAL 181 Query: 189 KEKGPSCIHRLTFRPLRNL 207 ++ G + HR F+P+ N+ Sbjct: 182 QKIGVTPHHRRLFKPVHNM 200 >gi|229192006|ref|ZP_04318976.1| Ribonuclease [Bacillus cereus ATCC 10876] gi|228591557|gb|EEK49406.1| Ribonuclease [Bacillus cereus ATCC 10876] Length = 254 Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 94/200 (47%), Positives = 131/200 (65%), Gaps = 6/200 (3%) Query: 12 FEL---EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 FE+ E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KR Sbjct: 54 FEMSKYENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKR 113 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E Y++I AI I + S + ID NI++AT A+ AV NL P+ LID +P Sbjct: 114 ERFYDEIKVQAIAIGVGIVSPEVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT 173 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +P + +IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + Sbjct: 174 PIPQTS--IIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPQYGFEQHMGYGTKQHLEA 231 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 I+ G HR +F P++++ Sbjct: 232 IQVHGVLDEHRKSFAPIKDM 251 >gi|239831265|ref|ZP_04679594.1| Ribonuclease HII [Ochrobactrum intermedium LMG 3301] gi|239823532|gb|EEQ95100.1| Ribonuclease HII [Ochrobactrum intermedium LMG 3301] Length = 281 Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 96/203 (47%), Positives = 133/203 (65%), Gaps = 2/203 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 IP P F E + + + + GIDE GRG LAGPVV AA++LD +N+P G++DSK+++ Sbjct: 75 IPIAPDFSEEKRLLSRGLKHIVGIDEAGRGPLAGPVVAAAVVLDIDNLPDGLDDSKRLTA 134 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 +RE LYE I + AI +S++S S + ID +I KA L+A+ A L + P ALIDGR Sbjct: 135 ARREALYEIILAKAITVSVASLSARSIDGSDIRKAALEAMRRASIGLTLRPCHALIDGRD 194 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P L C A++KGD S+SIAAASI+AKVTRDR+M A +P YG + H GY T +H Sbjct: 195 VPPGLACPGSALVKGDQRSISIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATERH 254 Query: 185 QQVIKEKGP-SCIHRLTFRPLRN 206 + I+ GP IHR TF P+++ Sbjct: 255 RAAIETAGPVPGIHRYTFAPIKD 277 >gi|254462688|ref|ZP_05076104.1| ribonuclease HII [Rhodobacterales bacterium HTCC2083] gi|206679277|gb|EDZ43764.1| ribonuclease HII [Rhodobacteraceae bacterium HTCC2083] Length = 208 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 88/198 (44%), Positives = 131/198 (66%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + E + + + VAG+DEVGRG LAGPV AA+ILDP IP G+NDSKK+S KKR+ Sbjct: 6 PDYSFEQRAQARGLSIVAGVDEVGRGPLAGPVTAAAVILDPMRIPQGLNDSKKLSAKKRQ 65 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L++ + A +SI+ AS + ID+ NI +A+ A+ AV L+ P LIDG IP L Sbjct: 66 ALHDDLLLCADVSIAHASVEEIDELNILRASHLAMERAVAGLKQRPNHLLIDGNMIPRGL 125 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + A++KGDS S+SI+AASI+AK+ RD +M + YP YG++++ GYP+ H+ ++ Sbjct: 126 AGLSEAIVKGDSRSVSISAASIVAKICRDYVMWDLGQHYPGYGWETNAGYPSKSHKLALE 185 Query: 190 EKGPSCIHRLTFRPLRNL 207 + G + HR +F+P+ N+ Sbjct: 186 KLGVTPHHRRSFKPVHNI 203 >gi|95930749|ref|ZP_01313482.1| Ribonuclease H [Desulfuromonas acetoxidans DSM 684] gi|95133229|gb|EAT14895.1| Ribonuclease H [Desulfuromonas acetoxidans DSM 684] Length = 210 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 94/207 (45%), Positives = 135/207 (65%), Gaps = 4/207 (1%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 +F + + + +FE + +R + VAGIDE GRG LAGPVV AA+IL + G+NDS Sbjct: 5 LFDDDLIDPTYFERQ--LRRQGTTLVAGIDEAGRGPLAGPVVAAAVILPEHFDLPGLNDS 62 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK++ KKRE+L+ I A+ + + A + ID+ NI +AT+ ++ AV L+V P+ L Sbjct: 63 KKLTEKKREQLFGPIRQQALAVGVGFAHAEEIDEINILQATVQSMCRAVARLKVTPQHLL 122 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 IDG + P L + KGDS SLS+AAAS+IAKV RDR+M++ + YPDYGF+ H GY Sbjct: 123 IDGIT-PLPLSIDQQTIKKGDSRSLSVAAASVIAKVVRDRMMKVYARHYPDYGFEGHKGY 181 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRN 206 +A+H+Q+I E GP +HR TF +R Sbjct: 182 GSARHRQLIAEHGPCPLHRKTFGGVRE 208 >gi|309807515|ref|ZP_07701472.1| ribonuclease HII [Lactobacillus iners LactinV 01V1-a] gi|308169242|gb|EFO71303.1| ribonuclease HII [Lactobacillus iners LactinV 01V1-a] Length = 250 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 94/190 (49%), Positives = 124/190 (65%), Gaps = 7/190 (3%) Query: 20 EKNMW----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 EK W VAG+DEVGRG LAGPVV AA+ILD N +NDSKK++ KKR EL+ I Sbjct: 59 EKEFWCQNKLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKKLTPKKRNELFPMI 118 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A+ +S+ A++ IDK NI++A A+ AV+ L+V P + L+D +P DLP Sbjct: 119 LDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVDAMDVPIDLP--QL 176 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +I+GDS S SIAAASI+AKV RDRLM + YP+Y F + GY TAKH +K+ GP+ Sbjct: 177 KLIRGDSKSNSIAAASIVAKVFRDRLMDAYGEIYPEYDFAHNAGYGTAKHLSALKQYGPT 236 Query: 195 CIHRLTFRPL 204 IHR +F P+ Sbjct: 237 PIHRFSFEPV 246 >gi|313892676|ref|ZP_07826259.1| ribonuclease HII [Veillonella sp. oral taxon 158 str. F0412] gi|313442767|gb|EFR61176.1| ribonuclease HII [Veillonella sp. oral taxon 158 str. F0412] Length = 265 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 87/197 (44%), Positives = 131/197 (66%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ E M ++ M+ VAG+DEVGRG +AGPV VAA+IL P + G+NDSKK++ +KRE L Sbjct: 63 YDYEGMFYDQGMYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREVL 122 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ +S S + ID+ NI++AT A+Y A+ L V + + D +P DL Sbjct: 123 YDIIMKEAVAVSCISYGPEKIDELNIYEATRQAMYEAIRTLSVPAEAVVADAMKLP-DLT 181 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGDS S +IA ASIIAKVTRDR M+ ++YP YGF H GY T H++ +++ Sbjct: 182 IPVESIIKGDSKSANIAVASIIAKVTRDRYMKQLDEEYPGYGFGIHKGYYTELHKEAVEQ 241 Query: 191 KGPSCIHRLTFRPLRNL 207 +G + +HR +F P++++ Sbjct: 242 QGVTPLHRKSFEPIKSI 258 >gi|218458163|ref|ZP_03498254.1| ribonuclease HII [Rhizobium etli Kim 5] Length = 161 Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 84/158 (53%), Positives = 112/158 (70%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 ++ P P F LE R+ WPVAG DE GRG LAGPVV AA+ILDP IP G+NDSK++ Sbjct: 1 DTAPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDSKQL 60 Query: 64 SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 S ++REEL+ +I ++A +SI+S+S ID+ +I KA+LDA+ A+ +L V L DG Sbjct: 61 SAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAVPASYVLTDGL 120 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM 161 +P L C AV+KGD+ S+SIAAASI+AKVTRDR+M Sbjct: 121 DVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMM 158 >gi|86136899|ref|ZP_01055477.1| ribonuclease HII [Roseobacter sp. MED193] gi|85826223|gb|EAQ46420.1| ribonuclease HII [Roseobacter sp. MED193] Length = 226 Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 93/200 (46%), Positives = 129/200 (64%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E+P LE EK VAG+DEVGRG LAGPV AA++LD ++P G+NDSKK+S KK Sbjct: 23 EQPDNSLEIAAHEKGYLRVAGVDEVGRGPLAGPVTAAAVVLDMADLPEGLNDSKKLSAKK 82 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 R L ++I + A +SI+ AS + ID NI +A+ A+ AV L P LIDG IP Sbjct: 83 RVVLAKEIFARAQVSIAEASVEEIDSINILRASHLAMERAVAALDPPPDYLLIDGNLIPR 142 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 DL A AV+KGD S+SIAAASI+AK RD LM +++P YG++ + GYP+ +H++ Sbjct: 143 DLTIDAQAVVKGDGKSVSIAAASIVAKEARDNLMVDLAQQFPRYGWEKNAGYPSKQHREA 202 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 + E G + HR +F+P+ + Sbjct: 203 LVELGVTPHHRRSFKPVHKI 222 >gi|154251159|ref|YP_001411983.1| ribonuclease H [Parvibaculum lavamentivorans DS-1] gi|189043635|sp|A7HQZ3|RNH2_PARL1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|154155109|gb|ABS62326.1| Ribonuclease H [Parvibaculum lavamentivorans DS-1] Length = 269 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 86/182 (47%), Positives = 116/182 (63%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 V G+DE GRG LAGPVV AA+I+D P G+NDSKK+ +R +L ++ A I + Sbjct: 63 VCGVDEAGRGPLAGPVVAAAVIIDLTRCPEGLNDSKKLDAARRADLLAELADCAEIGVGI 122 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS + ID+ NI AT+ A+ AV +L P ALIDG P L C + AVI GD+++ S Sbjct: 123 ASVEEIDEINILHATMLAMTRAVASLPRAPHIALIDGNRCPPSLACASRAVIGGDALARS 182 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 IAAASI+AKVTRDR+M + +P YGF+ H+GY T +H + GP IHR +F P+R Sbjct: 183 IAAASIVAKVTRDRMMAALAETHPGYGFEKHMGYSTPEHFDALSRLGPCAIHRRSFAPVR 242 Query: 206 NL 207 + Sbjct: 243 KM 244 >gi|315222958|ref|ZP_07864837.1| ribonuclease HII [Streptococcus anginosus F0211] gi|315187908|gb|EFU21644.1| ribonuclease HII [Streptococcus anginosus F0211] Length = 260 Score = 168 bits (426), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 97/201 (48%), Positives = 130/201 (64%), Gaps = 9/201 (4%) Query: 14 LEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LE M+R EK ++ +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI KK Sbjct: 54 LEQMLRYEKELYATGCQYIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKK 113 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 EE+Y+++ A+ + I +Q IDK NI++AT A+ AV NL++ P+ LID + Sbjct: 114 HEEIYQEVLKQAVAVGIGVKDNQVIDKVNIYEATKLAMLEAVGNLEISPQHLLIDAMQL- 172 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D+ ++IKGD+ SLSIAAASI+AKVTRDR+M YP Y F +VGY T H Sbjct: 173 -DVQVSQTSIIKGDANSLSIAAASIVAKVTRDRMMTDYELTYPGYDFTHNVGYGTQHHLD 231 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 +K KG + IHR TF P++++ Sbjct: 232 GLKRKGITPIHRKTFEPIKSM 252 >gi|304384964|ref|ZP_07367310.1| ribonuclease HII [Pediococcus acidilactici DSM 20284] gi|304329158|gb|EFL96378.1| ribonuclease HII [Pediococcus acidilactici DSM 20284] Length = 255 Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 94/197 (47%), Positives = 125/197 (63%), Gaps = 3/197 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F LE + + VAGIDEVGRG LAGPVV AA++LD + +NDSK++S K R Sbjct: 55 QKRFSLENELWQSGKQFVAGIDEVGRGCLAGPVVTAAVVLDDHFDLVEVNDSKQLSLKLR 114 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E LY +I S A+ + I S+Q ID+ I AT A+ A+ +L V P LID +P Sbjct: 115 ESLYAQILSEAVSVGIGVRSNQQIDQMGILNATKAAMNDAISHLNVTPEHLLIDAVQVPT 174 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +P + KGD+ S+SIAAASI+AKV RD LMR +K YP YGFD +VGY T +H + Sbjct: 175 SIP--KTVMYKGDAKSISIAAASIVAKVYRDHLMRSYNKVYPGYGFDQNVGYGTKQHLEG 232 Query: 188 IKEKGPSCIHRLTFRPL 204 +KE G + +HRLTF P+ Sbjct: 233 LKELGVTPLHRLTFEPV 249 >gi|163739877|ref|ZP_02147284.1| Ribonuclease H [Phaeobacter gallaeciensis BS107] gi|161386911|gb|EDQ11273.1| Ribonuclease H [Phaeobacter gallaeciensis BS107] Length = 205 Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 91/198 (45%), Positives = 128/198 (64%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + LEA + +AG+DEVGRG LAGPV AA+ILDP NIP G+NDSKK+S K+RE Sbjct: 4 PDYTLEAAAHGRGQIRIAGVDEVGRGPLAGPVTAAAVILDPENIPEGLNDSKKLSAKRRE 63 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 + I + A +SI+ AS + ID NI +A+ A+ AV L P LIDG IP+ L Sbjct: 64 AVEASIFAQAEVSIAHASVEEIDSLNILRASHLAMERAVAALDPAPDYLLIDGNLIPKGL 123 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A VIKGD+ S+SIAAASI+AK RDR+M +++P YG++ + GYP+ +H++ + Sbjct: 124 LQPAEFVIKGDAKSVSIAAASIVAKQARDRIMVDLAQQFPGYGWEKNAGYPSKQHREALV 183 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + HR +F+P+ + Sbjct: 184 SLGVTPHHRRSFKPVHKM 201 >gi|329767413|ref|ZP_08258938.1| hypothetical protein HMPREF0428_00635 [Gemella haemolysans M341] gi|328836102|gb|EGF85793.1| hypothetical protein HMPREF0428_00635 [Gemella haemolysans M341] Length = 258 Score = 168 bits (425), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 90/184 (48%), Positives = 128/184 (69%), Gaps = 4/184 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG LAGPVV AA+IL ++ G+NDSKK+S KKREE+YE+I + A+ +I Sbjct: 70 ICGIDEVGRGPLAGPVVAAAVILKKDSYFEGLNDSKKLSAKKREEIYEQIKNEAVAYAIC 129 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-EDLPCQAFAVIKGDSIS 143 + I+K+NI+ A A+ AVE L+V P LID ++P E+ P F+++KGD S Sbjct: 130 EVDNIEIEKYNIYNAARIAMQRAVEKLEVKPDFLLID--AMPFENYPIPNFSMVKGDEKS 187 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +SIAAAS++AKV RD LM+ KKYP+Y F+++ GY T KH + +KE G + IHR F P Sbjct: 188 VSIAAASVMAKVYRDNLMKEYAKKYPNYDFENNAGYGTKKHLEGLKEYGVTPIHRRDFEP 247 Query: 204 LRNL 207 ++++ Sbjct: 248 IKSM 251 >gi|270290222|ref|ZP_06196447.1| ribonuclease HII [Pediococcus acidilactici 7_4] gi|270281003|gb|EFA26836.1| ribonuclease HII [Pediococcus acidilactici 7_4] Length = 255 Score = 167 bits (424), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 94/197 (47%), Positives = 125/197 (63%), Gaps = 3/197 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F LE + + VAGIDEVGRG LAGPVV AA++LD + +NDSK++S K R Sbjct: 55 QKRFSLENELWQSGKQFVAGIDEVGRGCLAGPVVTAAVVLDSHFDLVEVNDSKQLSLKLR 114 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E LY +I S A+ + I S+Q ID+ I AT A+ A+ +L V P LID +P Sbjct: 115 ESLYAQILSEAVSVGIGVRSNQQIDQMGILNATKAAMNDAISHLNVTPEHLLIDAVQVPT 174 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +P + KGD+ S+SIAAASI+AKV RD LMR +K YP YGFD +VGY T +H + Sbjct: 175 SIP--KTVMYKGDAKSISIAAASIVAKVYRDHLMRSYNKIYPGYGFDQNVGYGTKQHLEG 232 Query: 188 IKEKGPSCIHRLTFRPL 204 +KE G + +HRLTF P+ Sbjct: 233 LKELGITPLHRLTFEPV 249 >gi|260574050|ref|ZP_05842055.1| Ribonuclease H [Rhodobacter sp. SW2] gi|259023516|gb|EEW26807.1| Ribonuclease H [Rhodobacter sp. SW2] Length = 213 Score = 167 bits (424), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 90/201 (44%), Positives = 124/201 (61%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 P P F E + VAG+DEVGRG LAGPV AA+ L P +IP G+NDSKK+S Sbjct: 4 PPFPDFSFETAALARGARVVAGVDEVGRGPLAGPVTAAAVRLFPGSIPLGLNDSKKLSAA 63 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 +RE L+ + A +SI+ A+ ID+ NI +A+ A+ A+ L ALIDG +P Sbjct: 64 RREALFHALMEQAQVSIAHATVAEIDELNILRASHLAMQRALAGLPEPCDHALIDGNLLP 123 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 L C A A++KGD SLSIAAASIIAKVTRD +M +++P YG++++ GYPT H Sbjct: 124 RGLSCAAQAIVKGDGRSLSIAAASIIAKVTRDAIMVDLAQQHPGYGWEANAGYPTKAHLA 183 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 + G + HR +F+P+ N+ Sbjct: 184 ALLNLGVTPWHRRSFKPVHNI 204 >gi|294500952|ref|YP_003564652.1| ribonuclease HII [Bacillus megaterium QM B1551] gi|294350889|gb|ADE71218.1| ribonuclease HII [Bacillus megaterium QM B1551] Length = 255 Score = 167 bits (424), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 91/198 (45%), Positives = 127/198 (64%), Gaps = 8/198 (4%) Query: 15 EAMVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 E M E ++ +AG+DEVGRG LAGPVV AA+IL P+ G+ DSKK+S KRE Sbjct: 57 EMMAYENELYSQGATYIAGVDEVGRGPLAGPVVAAAVILPPDFFLPGLTDSKKLSEAKRE 116 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 YE+I SA+ I I + ID NI++AT A+ A+E L V P LID +P Sbjct: 117 AFYEEICKSAVAIGIGIIGAEVIDSINIYEATKKAMTEAIELLAVQPDELLIDAMKLP-- 174 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 +P ++IKGD+ S+SIAA+S+IAKVTRDR+M+ ++YP YGF+ H+GY T +H + I Sbjct: 175 VPISQQSIIKGDATSISIAASSVIAKVTRDRMMKELGERYPAYGFEKHMGYGTKQHLEAI 234 Query: 189 KEKGPSCIHRLTFRPLRN 206 ++ G HR +F P++N Sbjct: 235 EKYGILPEHRRSFAPIKN 252 >gi|293570274|ref|ZP_06681343.1| ribonuclease HII [Enterococcus faecium E980] gi|291609681|gb|EFF38942.1| ribonuclease HII [Enterococcus faecium E980] Length = 255 Score = 167 bits (424), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 97/207 (46%), Positives = 131/207 (63%), Gaps = 13/207 (6%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 MFC FE + + + W +AGIDEVGRG LAGPVV AA+IL N I G+NDS Sbjct: 58 MFC--------FEKQGYA-QGHQW-IAGIDEVGRGPLAGPVVAAAVILPKNEIILGLNDS 107 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 K++S KKRE L ++I A+ I I Q ID+ NI++A+ A+ AVENL + P L Sbjct: 108 KQLSEKKRELLSQQIQEKALAIGIGIIDQQAIDEVNIYEASKLAMIQAVENLSIAPSYLL 167 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 ID ++ DLP Q +IKGD+ S+SIAAASIIAKV RD+LM+ YP YGF + GY Sbjct: 168 IDAMTL--DLPIQQEKIIKGDARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGY 225 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRN 206 T +H + ++ +G + IHR +F P++ Sbjct: 226 GTKEHLEGLERQGITPIHRKSFAPVKK 252 >gi|294675759|ref|YP_003576374.1| ribonuclease HII [Rhodobacter capsulatus SB 1003] gi|294474579|gb|ADE83967.1| ribonuclease HII [Rhodobacter capsulatus SB 1003] Length = 211 Score = 167 bits (424), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 88/196 (44%), Positives = 129/196 (65%), Gaps = 2/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE A+ R +AG+DEVGRG L GPV AA++LD + +P G+NDSKK+S K+R L Sbjct: 9 FEQAALAR--GFTRIAGVDEVGRGPLCGPVTAAAVVLDLSCLPEGLNDSKKLSAKRRAAL 66 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +IT++A +S++ AS ID NI +A+ A+ A+E L+ P LIDG +P+ L Sbjct: 67 VAQITATADVSVAHASVAEIDALNILQASHLAMIRAIEGLKTPPDHVLIDGNRLPKALTI 126 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A A++KGD+ S+SIAAASI+AK RD LM ++YP YG++ + GYPT H Q + + Sbjct: 127 SAEAIVKGDARSVSIAAASILAKEIRDALMVDLAQQYPGYGWERNAGYPTRDHLQALLDL 186 Query: 192 GPSCIHRLTFRPLRNL 207 G + +HR +F+P+ N+ Sbjct: 187 GVTPVHRRSFKPVHNI 202 >gi|257898823|ref|ZP_05678476.1| ribonuclease HII [Enterococcus faecium Com15] gi|257836735|gb|EEV61809.1| ribonuclease HII [Enterococcus faecium Com15] Length = 255 Score = 167 bits (424), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 97/207 (46%), Positives = 131/207 (63%), Gaps = 13/207 (6%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 MFC FE + + + W +AGIDEVGRG LAGPVV AA+IL N I G+NDS Sbjct: 58 MFC--------FEKQGYA-QGHQW-IAGIDEVGRGPLAGPVVAAAVILPKNEIILGLNDS 107 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 K++S KKRE L ++I A+ I I Q ID+ NI++A+ A+ AVENL + P L Sbjct: 108 KQLSEKKRELLSQQIQEKALAIGIGIIDQQAIDEVNIYEASKLAMIQAVENLSIAPSYLL 167 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 ID ++ DLP Q +IKGD+ S+SIAAASIIAKV RD+LM+ YP YGF + GY Sbjct: 168 IDAMTL--DLPIQQEKIIKGDARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGY 225 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRN 206 T +H + ++ +G + IHR +F P++ Sbjct: 226 GTKEHLEGLERQGITPIHRKSFAPVKK 252 >gi|157962690|ref|YP_001502724.1| ribonuclease HII [Shewanella pealeana ATCC 700345] gi|189043660|sp|A8H6K2|RNH2_SHEPA RecName: Full=Ribonuclease HII; Short=RNase HII gi|157847690|gb|ABV88189.1| Ribonuclease H [Shewanella pealeana ATCC 700345] Length = 203 Score = 167 bits (423), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 91/180 (50%), Positives = 119/180 (66%), Gaps = 2/180 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKRE L+E+I A+ +S+ S Sbjct: 21 AGVDEVGRGPLIGNVVTAAVILDPNNPIEGLNDSKKLSEKKRELLFEQIQQKALSVSVGS 80 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A+ ID+ NI AT+ A+ AV L + P S L+DG P D ++ A+IKGD + + Sbjct: 81 ATPAEIDELNILHATMLAMQRAVAGLNIKPSSVLVDGNRTP-DFGVESHAIIKGDGLIDA 139 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASIIAKV RDR M YP+YGF+ H GYPT H + + + G HR +FRP+R Sbjct: 140 ISAASIIAKVVRDREMDALALLYPEYGFEKHKGYPTKAHFEALAQHGVLPEHRKSFRPVR 199 >gi|163743378|ref|ZP_02150758.1| ribonuclease HII [Phaeobacter gallaeciensis 2.10] gi|161383372|gb|EDQ07761.1| ribonuclease HII [Phaeobacter gallaeciensis 2.10] Length = 205 Score = 167 bits (423), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 90/198 (45%), Positives = 128/198 (64%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + LEA + +AG+DEVGRG LAGPV AA+ILDP NIP G+NDSKK+S K+RE Sbjct: 4 PDYTLEAAAHGRGQIRIAGVDEVGRGPLAGPVTAAAVILDPENIPEGLNDSKKLSAKRRE 63 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 + I + A ++I+ AS + ID NI +A+ A+ AV L P LIDG IP+ L Sbjct: 64 AVEASIFAQAEVAIAHASVEEIDSLNILRASHLAMERAVAALDPAPDYLLIDGNLIPKGL 123 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A VIKGD+ S+SIAAASI+AK RDR+M +++P YG++ + GYP+ +H++ + Sbjct: 124 LQPAEFVIKGDAKSVSIAAASIVAKQARDRIMVDLAQQFPGYGWEKNAGYPSKQHREALV 183 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + HR +F+P+ + Sbjct: 184 SLGVTPHHRRSFKPVHKM 201 >gi|163745410|ref|ZP_02152770.1| ribonuclease HII [Oceanibulbus indolifex HEL-45] gi|161382228|gb|EDQ06637.1| ribonuclease HII [Oceanibulbus indolifex HEL-45] Length = 218 Score = 167 bits (423), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 83/201 (41%), Positives = 127/201 (63%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 P P FE E + +AG+DEVGRG LAGPV AA++ IP G+NDSKK++ + Sbjct: 9 PMIPDFEFERGAITRGFRTIAGVDEVGRGPLAGPVTAAAVVFTEGQIPEGLNDSKKLTAR 68 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE LY++I S A++ ++ A+ + I++HNI +A+ A+ A+ L ALIDG +P Sbjct: 69 ARERLYDEIMSMAVVCVAHATVEEIEEHNILRASHLAMTRALAGLACAADYALIDGNMLP 128 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 DL A V+KGD+ LSI+AASI+AK RDRLM +++P YG+++++GY + H Sbjct: 129 RDLSLPAQPVVKGDARCLSISAASIVAKTVRDRLMVDLAQQHPGYGWETNMGYGSKSHMA 188 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 +++ G + HR F+P+ N+ Sbjct: 189 ALRDLGVTPHHRRLFKPIHNI 209 >gi|260425244|ref|ZP_05779224.1| ribonuclease HII [Citreicella sp. SE45] gi|260423184|gb|EEX16434.1| ribonuclease HII [Citreicella sp. SE45] Length = 191 Score = 167 bits (422), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 86/182 (47%), Positives = 127/182 (69%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 +AG+DEVGRG LAGPVV AA++LDP +P G+NDSKK++ K+R L + A +SI S Sbjct: 1 MAGVDEVGRGPLAGPVVAAAVVLDPRWVPPGLNDSKKLTAKRRARLSAWLWECAEVSIGS 60 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS + ID+ NI +A+L A++ AV L+ P L+DGR +P LPC+A +IKGD S+S Sbjct: 61 ASVEEIDQLNILQASLLAMHRAVTGLENAPGHVLVDGRFLPPQLPCEATPIIKGDGRSVS 120 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 IAAAS++AK+ RDRLMR + +P YG++++ GY + H+ ++ G + HR +F+P+ Sbjct: 121 IAAASVVAKIWRDRLMRDLAQHHPGYGWETNAGYGSKSHKLALQNLGVTPHHRRSFKPIH 180 Query: 206 NL 207 N+ Sbjct: 181 NI 182 >gi|268590518|ref|ZP_06124739.1| ribonuclease HII [Providencia rettgeri DSM 1131] gi|291314104|gb|EFE54557.1| ribonuclease HII [Providencia rettgeri DSM 1131] Length = 197 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 91/181 (50%), Positives = 118/181 (65%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK++ KKRE+L+++I A+ I Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPNNPIIGLADSKKLTEKKREKLFDEIQEKALCWCIG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID NI AT+ A+ AV L +IP LIDG PE LP + AVIKGDS+ Sbjct: 71 RAEPEEIDNINILHATMLAMQRAVAGLSIIPEYVLIDGNRCPE-LPMPSQAVIKGDSLVQ 129 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RDR M K +P+YGF H GYPTA H + + + G + HR +F P+ Sbjct: 130 EISAASILAKVIRDREMVELDKAFPEYGFAKHKGYPTAYHLEKLAQYGATEFHRKSFAPV 189 Query: 205 R 205 R Sbjct: 190 R 190 >gi|226945927|ref|YP_002801000.1| ribonuclease HII [Azotobacter vinelandii DJ] gi|259494062|sp|C1DST2|RNH2_AZOVD RecName: Full=Ribonuclease HII; Short=RNase HII gi|226720854|gb|ACO80025.1| Ribonuclease HII [Azotobacter vinelandii DJ] Length = 207 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 94/184 (51%), Positives = 117/184 (63%), Gaps = 4/184 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S +RE L E+I A+ I+ Sbjct: 14 VAGVDEVGRGPLCGAVVTAAVILDPERPILGLNDSKKLSEARREALSEEIREKALAWCIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AVE L V PR ALIDG P+ +PC VIKGD+ Sbjct: 74 RAEVEEIDRLNILHATMLAMRRAVEGLAVTPRLALIDGNRCPKLAVPCAP--VIKGDAQV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV RDR M + YP YG H GYPTA H + + GP+ IHR +F P Sbjct: 132 PAIAAASILAKVARDREMLVLDALYPGYGLARHKGYPTAVHLEALARLGPTPIHRRSFAP 191 Query: 204 LRNL 207 +R L Sbjct: 192 VREL 195 >gi|323466644|gb|ADX70331.1| Ribonuclease HII [Lactobacillus helveticus H10] Length = 250 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 97/199 (48%), Positives = 125/199 (62%), Gaps = 7/199 (3%) Query: 14 LEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 LE EK W VAG+DEVGRG LAGPVV AA+I+D N +NDSKK+S +KR Sbjct: 52 LERFSYEKQFWQKGELVAGVDEVGRGPLAGPVVTAAVIIDHNFDLLEVNDSKKLSPEKRL 111 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +LY KI S AI + I S ID+ NI++A A+ AV+ L V P + L+D ++P D Sbjct: 112 QLYPKILSEAISVGIGVKSAAVIDQINIYEADRQAMAQAVKALDVKPNALLVDAMNVPVD 171 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LP +IKGD+ S SIAAASI+AKV RD+LM K YP YGF + GY T +H + Sbjct: 172 LP--QIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFPRNAGYGTKEHIDAL 229 Query: 189 KEKGPSCIHRLTFRPLRNL 207 K+ GP+ IHR TF P+ + Sbjct: 230 KKYGPTPIHRKTFAPVSDF 248 >gi|268318031|ref|YP_003291750.1| Ribonuclease H [Rhodothermus marinus DSM 4252] gi|262335565|gb|ACY49362.1| Ribonuclease H [Rhodothermus marinus DSM 4252] Length = 198 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 89/178 (50%), Positives = 118/178 (66%), Gaps = 1/178 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG LAGPVV AA+IL P+ G+ DSK++ + RE+L E+I + A+ I I Sbjct: 18 VAGVDEVGRGCLAGPVVAAAVILPPHVQLDGVRDSKQLRPEVREKLAEQIRAQALAIGIG 77 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + + ID+ NI A L+A+ AV NL++ P LIDG D PC A ++KGD SL Sbjct: 78 MCTPEEIDRLNILNAALEAMRRAVANLELTPDYLLIDGNRCFSDPPCPAKPIVKGDQQSL 137 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASIIAK TRD LM+ H+++P YG+D +VGYPT H + + GPS HR +FR Sbjct: 138 LIAAASIIAKTTRDALMQQLHEEFPVYGWDRNVGYPTRTHYEALARYGPSPYHRRSFR 195 >gi|260101617|ref|ZP_05751854.1| ribonuclease HII [Lactobacillus helveticus DSM 20075] gi|260084580|gb|EEW68700.1| ribonuclease HII [Lactobacillus helveticus DSM 20075] Length = 250 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 96/199 (48%), Positives = 125/199 (62%), Gaps = 7/199 (3%) Query: 14 LEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 LE EK W VAG+DEVGRG LAGPVV AA+I+D N +NDSKK+S +KR Sbjct: 52 LERFSYEKQFWQKDELVAGVDEVGRGPLAGPVVTAAVIIDHNFDLLEVNDSKKLSPEKRL 111 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +LY KI S A+ + I S ID+ NI++A A+ AV+ L V P + L+D ++P D Sbjct: 112 QLYPKILSEAVSVGIGVKSAAVIDQINIYEADRQAMAQAVKALDVKPNALLVDAMNVPVD 171 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LP +IKGD+ S SIAAASI+AKV RD+LM K YP YGF + GY T +H + Sbjct: 172 LP--QIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFPRNAGYGTKEHIDAL 229 Query: 189 KEKGPSCIHRLTFRPLRNL 207 K+ GP+ IHR TF P+ + Sbjct: 230 KKYGPTPIHRKTFAPVSDF 248 >gi|88798271|ref|ZP_01113857.1| ribonuclease HII [Reinekea sp. MED297] gi|88779047|gb|EAR10236.1| ribonuclease HII [Reinekea sp. MED297] Length = 202 Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 91/183 (49%), Positives = 122/183 (66%), Gaps = 1/183 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG LAG VV AA+ILDP G+NDSKK+S +R L + I +A+ +++ Sbjct: 15 VAGVDEVGRGPLAGKVVTAAVILDPARPIDGLNDSKKLSPARRLALSQHIRENALSYAVA 74 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID+ NI AT+ A+ AVE L V P LIDG +P LPC A A++KGD Sbjct: 75 EASVEEIDELNILGATMLAMRRAVEALSVAPNFCLIDGNRLPPGLPCPAEAIVKGDGSVP 134 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKVTRD+ M H+++P+YGFD H GY TA+H + + GP HR +F P+ Sbjct: 135 AISAASILAKVTRDQQMLDLHQQHPEYGFDQHKGYGTAQHLAALVKFGPLKEHRRSFAPV 194 Query: 205 RNL 207 R L Sbjct: 195 RKL 197 >gi|294140018|ref|YP_003555996.1| ribonuclease HII [Shewanella violacea DSS12] gi|293326487|dbj|BAJ01218.1| ribonuclease HII [Shewanella violacea DSS12] Length = 218 Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 90/187 (48%), Positives = 119/187 (63%), Gaps = 8/187 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKRE L+ +I A+ IS+ Sbjct: 21 AGVDEVGRGPLVGNVVTAAVILDPNNPILGLNDSKKLSEKKREALFTEIHEKALSISVGH 80 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-------EDLPCQAFAVIK 138 AS + ID+ NI AT+ A+ AV L++ P L+DG P +L +A A++K Sbjct: 81 ASPEEIDELNILHATMLAMQRAVAGLEIKPVKVLVDGNRTPIFHHGDNTELAIEAHAIVK 140 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD + I+AASIIAKV RDR M + ++P YGF H GYPT H Q +++ G HR Sbjct: 141 GDGLIAGISAASIIAKVIRDREMELLDMEHPQYGFAKHKGYPTKAHFQALEQHGVLAEHR 200 Query: 199 LTFRPLR 205 +FRP+R Sbjct: 201 KSFRPVR 207 >gi|97182194|sp|Q5PBG2|RNH2_ANAMM RecName: Full=Ribonuclease HII; Short=RNase HII Length = 243 Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 2/201 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKK 67 P F +E +R + + G+DEVG GA+AGPVV AA+ L + I DSK +S KK Sbjct: 9 PSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKALSSKK 68 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 REEL+ KIT+ A + A + I++HNI A+ ++ A++NL V L+DG P Sbjct: 69 REELFCKITAHAKYGVGFARVREIEQHNILVASHISMKRALQNLGVKADLVLVDGSRAPA 128 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP ++KGDSIS SIAAASIIAKVTRDR MR H++YP+Y ++ + GY T H Q Sbjct: 129 GLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKAHMQS 188 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 +K G + HR TF P++ LS Sbjct: 189 LKLYGKTAQHRSTFAPVKQLS 209 >gi|161507470|ref|YP_001577424.1| ribonuclease HII [Lactobacillus helveticus DPC 4571] gi|172048283|sp|A8YV45|RNH2_LACH4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|160348459|gb|ABX27133.1| ribonuclease HII [Lactobacillus helveticus DPC 4571] Length = 250 Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 96/199 (48%), Positives = 125/199 (62%), Gaps = 7/199 (3%) Query: 14 LEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 LE EK W VAG+DEVGRG LAGPVV AA+I+D N +NDSKK+S +KR Sbjct: 52 LERFSYEKQFWQKGELVAGVDEVGRGPLAGPVVTAAVIIDHNFDLLEVNDSKKLSPEKRL 111 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +LY KI S A+ + I S ID+ NI++A A+ AV+ L V P + L+D ++P D Sbjct: 112 QLYPKILSEAVSVGIGVKSAAVIDQINIYEADRQAMAQAVKALDVKPNALLVDAMNVPVD 171 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LP +IKGD+ S SIAAASI+AKV RD+LM K YP YGF + GY T +H + Sbjct: 172 LP--QIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFPRNAGYGTKEHIDAL 229 Query: 189 KEKGPSCIHRLTFRPLRNL 207 K+ GP+ IHR TF P+ + Sbjct: 230 KKYGPTPIHRKTFAPVSDF 248 >gi|212710383|ref|ZP_03318511.1| hypothetical protein PROVALCAL_01443 [Providencia alcalifaciens DSM 30120] gi|212686965|gb|EEB46493.1| hypothetical protein PROVALCAL_01443 [Providencia alcalifaciens DSM 30120] Length = 196 Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 91/182 (50%), Positives = 120/182 (65%), Gaps = 4/182 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKRE+L+++I A+ I Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKREKLFDEIKEKALCWCIG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AVE L + P L+DG P+ D+P QA V+KGDS+ Sbjct: 71 RAEPEEIDQLNILHATMLAMQRAVEGLLIKPEFVLVDGNRCPKLDMPSQA--VVKGDSLV 128 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RDR M K +P+YGF H GYPTA H + + E G + HR +F P Sbjct: 129 QEISAASILAKVVRDREMVELDKAFPEYGFAKHKGYPTAYHLEKLAEFGATEFHRKSFAP 188 Query: 204 LR 205 +R Sbjct: 189 VR 190 >gi|197119787|ref|YP_002140214.1| ribonuclease HII [Geobacter bemidjiensis Bem] gi|254807977|sp|B5EBC6|RNH2_GEOBB RecName: Full=Ribonuclease HII; Short=RNase HII gi|197089147|gb|ACH40418.1| ribonuclease HII [Geobacter bemidjiensis Bem] Length = 230 Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 97/199 (48%), Positives = 123/199 (61%), Gaps = 6/199 (3%) Query: 7 PERP--HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 PE P LE + + +AGIDE GRG LAGPVV AA++L + G+NDSK+++ Sbjct: 9 PEAPIDLLALEGQALRRGYFRIAGIDEAGRGPLAGPVVAAAVMLPAGLLLPGVNDSKQLT 68 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +KREEL++ I A+ + + H +D NI +ATL A+ AV L + P LIDG Sbjct: 69 EEKREELFDVIHREALAVGVGIGDHALVDSINILQATLSAMRDAVRALSITPGFLLIDGI 128 Query: 124 S-IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 S IP ++P + V KGDS+SLSIAAASIIAKVTRDR+M +YP YGF SH GY A Sbjct: 129 SNIPMNIPQRT--VKKGDSLSLSIAAASIIAKVTRDRMMVEYDAQYPGYGFASHKGYGAA 186 Query: 183 KHQQVIKEKGPSCIHRLTF 201 H I E GP IHR TF Sbjct: 187 SHLAAIAELGPCPIHRKTF 205 >gi|158424022|ref|YP_001525314.1| ribonuclease HII [Azorhizobium caulinodans ORS 571] gi|189043564|sp|A8I6E6|RNH2_AZOC5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|158330911|dbj|BAF88396.1| ribonuclease H [Azorhizobium caulinodans ORS 571] Length = 259 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 94/194 (48%), Positives = 126/194 (64%), Gaps = 1/194 (0%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F+ E V + M PVAG DE GRG LAGPVV AA+ILDP IP G++DSKK++ +RE L Sbjct: 43 FKRERAVLKSGMAPVAGADEAGRGPLAGPVVAAAVILDPKRIPAGLDDSKKLTATRREAL 102 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +++I ++A +S+ A ID+ NI +ATL A+ +AV+ L PR +DG P L C Sbjct: 103 FDEICATAEVSVVMAPPSRIDRDNIRQATLWALANAVKGLPEDPRLVFVDGNDRPP-LEC 161 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + VI GD + SIAAASI+AKVTRDRLM +P YGF+ H+GY TA+H ++ Sbjct: 162 EVEMVIGGDGLIASIAAASIVAKVTRDRLMVGLGAAFPGYGFERHMGYGTAEHGAALRRL 221 Query: 192 GPSCIHRLTFRPLR 205 GP HR +F P+R Sbjct: 222 GPCRHHRTSFAPVR 235 >gi|171318092|ref|ZP_02907261.1| Ribonuclease H [Burkholderia ambifaria MEX-5] gi|171096716|gb|EDT41601.1| Ribonuclease H [Burkholderia ambifaria MEX-5] Length = 217 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 90/182 (49%), Positives = 122/182 (67%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS-SAIISIS 84 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LY+ I + S+ ++ Sbjct: 28 VCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKALSAKKRDALYDLIVARSSAYCVA 87 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS ID NI AT+ A+ AVE L V+P A IDG P L +A A++ GD++ Sbjct: 88 SASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LMVRAEAIVSGDALVP 146 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI+AASI+AKVTRDR++ H+++P YGF+ HVGY T KH ++E GP +HR +F P+ Sbjct: 147 SISAASILAKVTRDRMLVDLHERFPVYGFNVHVGYSTPKHLAALREHGPCEVHRRSFAPV 206 Query: 205 RN 206 R Sbjct: 207 RE 208 >gi|255004020|ref|ZP_05278821.1| ribonuclease HII (rnhB) [Anaplasma marginale str. Virginia] Length = 239 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 2/201 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKK 67 P F +E +R + + G+DEVG GA+AGPVV AA+ L + I DSK +S KK Sbjct: 5 PSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKALSSKK 64 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 REEL+ KIT+ A + A + I++HNI A+ ++ A++NL V L+DG P Sbjct: 65 REELFCKITAHARYGVGFARVREIEQHNILVASHISMKRALQNLGVKADLVLVDGSRAPA 124 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP ++KGDSIS SIAAASIIAKVTRDR MR H++YP+Y ++ + GY T H Q Sbjct: 125 GLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKAHMQS 184 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 +K G + HR TF P++ LS Sbjct: 185 LKLYGKTAQHRSTFAPVKQLS 205 >gi|254994768|ref|ZP_05276958.1| ribonuclease HII (rnhB) [Anaplasma marginale str. Mississippi] Length = 239 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 2/201 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKK 67 P F +E +R + + G+DEVG GA+AGPVV AA+ L + I DSK +S KK Sbjct: 5 PSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKALSSKK 64 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 REEL+ KIT+ A + A + I++HNI A+ ++ A++NL V L+DG P Sbjct: 65 REELFCKITAHARYGVGFARVREIEQHNILVASHISMKRALQNLGVKADLVLVDGSRAPA 124 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP ++KGDSIS SIAAASIIAKVTRDR MR H++YP+Y ++ + GY T H Q Sbjct: 125 GLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKAHMQS 184 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 +K G + HR TF P++ LS Sbjct: 185 LKLYGKTAQHRSTFAPVKQLS 205 >gi|170723229|ref|YP_001750917.1| ribonuclease HII [Pseudomonas putida W619] gi|229564298|sp|B1JBP6|RNH2_PSEPW RecName: Full=Ribonuclease HII; Short=RNase HII gi|169761232|gb|ACA74548.1| Ribonuclease H [Pseudomonas putida W619] Length = 207 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 92/181 (50%), Positives = 117/181 (64%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ KRE L+++I + A+ I+ Sbjct: 14 VAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEAKREALFDEICAKALSFCIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI +AT+ A+ AVE L V P+ ALIDG P+ L A VIKGDS Sbjct: 74 RAEVEEIDRLNILQATMLAMQRAVEGLSVTPKLALIDGNRCPK-LSVPAAPVIKGDSQVP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKVTRDR M YP YG H GYPT H + + GP+ IHR +F P+ Sbjct: 133 AIAAASILAKVTRDREMSAFELIYPGYGMGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 192 Query: 205 R 205 R Sbjct: 193 R 193 >gi|262372179|ref|ZP_06065458.1| ribonuclease HII [Acinetobacter junii SH205] gi|262312204|gb|EEY93289.1| ribonuclease HII [Acinetobacter junii SH205] Length = 188 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 86/181 (47%), Positives = 117/181 (64%), Gaps = 1/181 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A+ SI+ Sbjct: 3 VAGVDEAGRGPLVGSVVAAAVILDPNNPIEGLNDSKKLTEKKREKLFIEIKEKALAWSIA 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A+H ID+ NI +AT A+ AVENL+ P ++DG IP+ + A++ GD+ Sbjct: 63 EATHTEIDEMNILQATFLAMRRAVENLKTTPHKVIVDGNQIPKGIEIACEAIVGGDATHA 122 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M+ + YPDYGF H GYPT H + I G HR ++ P+ Sbjct: 123 EISAASILAKVTRDHQMKTLDELYPDYGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYAPV 182 Query: 205 R 205 + Sbjct: 183 K 183 >gi|15834918|ref|NP_296677.1| ribonuclease HII [Chlamydia muridarum Nigg] gi|270285088|ref|ZP_06194482.1| ribonuclease HII [Chlamydia muridarum Nigg] gi|270289111|ref|ZP_06195413.1| ribonuclease HII [Chlamydia muridarum Weiss] gi|301336484|ref|ZP_07224686.1| ribonuclease HII [Chlamydia muridarum MopnTet14] gi|11387107|sp|Q9PL10|RNH2_CHLMU RecName: Full=Ribonuclease HII; Short=RNase HII gi|8163191|gb|AAF73545.1| ribonuclease HII [Chlamydia muridarum Nigg] Length = 217 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 126/206 (61%), Gaps = 14/206 (6%) Query: 13 ELEAMVREKNMWP----------VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62 E E + REK+++ +AG+DE GRG LAGPVV A IL + GI+DSKK Sbjct: 6 EQELLFREKSVFEDQAIKQGYSRIAGVDEAGRGPLAGPVVAGACILPGGKLFLGIDDSKK 65 Query: 63 ISHKKREELYEKITSSAIIS--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 +S K+R LYE + ++ + S + ID+ NI +AT +A+ A+ +L+ P L+ Sbjct: 66 LSPKQRRYLYELLLEDPEVTCGVGVVSVERIDEINILEATKEAMVQAIASLRSTPDFLLV 125 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG +P ++PC +IKGDS S+SIAAASIIAK RD LMR H +YP+YGFD H GY Sbjct: 126 DGLFLPHEIPC--LKIIKGDSRSVSIAAASIIAKEYRDELMRKLHSEYPEYGFDKHKGYG 183 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206 T H Q +K+ GP HR +F P++ Sbjct: 184 TVAHLQALKQFGPCVYHRKSFSPVKE 209 >gi|85059907|ref|YP_455609.1| ribonuclease HII [Sodalis glossinidius str. 'morsitans'] gi|97189300|sp|Q2NRM1|RNH2_SODGM RecName: Full=Ribonuclease HII; Short=RNase HII gi|84780427|dbj|BAE75204.1| ribonuclease HII [Sodalis glossinidius str. 'morsitans'] Length = 198 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 91/183 (49%), Positives = 118/183 (64%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+RE LYE+IT A+ S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPARPVLGLADSKKLSEKRREALYEEITRYALAWSVG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID NI++ATL A+ AV L V+P L+DG P LP + A++KGDS Sbjct: 73 RAEASEIDSINIYQATLLAMQRAVAALAVVPDFVLVDGNRCPL-LPMPSQAIVKGDSRVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKVTRDR M H ++P+YGF H GYPTA H + + G + HR +F P+ Sbjct: 132 EISAASIIAKVTRDREMAALHLQFPEYGFAQHKGYPTAFHLEKLALHGATVHHRRSFAPV 191 Query: 205 RNL 207 R + Sbjct: 192 RRV 194 >gi|170699887|ref|ZP_02890917.1| Ribonuclease H [Burkholderia ambifaria IOP40-10] gi|170135209|gb|EDT03507.1| Ribonuclease H [Burkholderia ambifaria IOP40-10] Length = 217 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 90/182 (49%), Positives = 121/182 (66%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LY+ I + A ++ Sbjct: 28 VCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKALSAKKRDALYDLIVARASAYCVA 87 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS ID NI AT+ A+ AVE L V+P A IDG P L +A A++ GD++ Sbjct: 88 SASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LTVRAEAIVSGDALVP 146 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI+AASI+AKVTRDR++ H+++P YGF+ HVGY T KH ++E GP +HR +F P+ Sbjct: 147 SISAASILAKVTRDRMLVDLHERFPVYGFNVHVGYSTPKHLAALREHGPCEVHRRSFAPV 206 Query: 205 RN 206 R Sbjct: 207 RE 208 >gi|89052882|ref|YP_508333.1| ribonuclease H [Jannaschia sp. CCS1] gi|122499674|sp|Q28VF4|RNH2_JANSC RecName: Full=Ribonuclease HII; Short=RNase HII gi|88862431|gb|ABD53308.1| RNase HII [Jannaschia sp. CCS1] Length = 199 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 91/195 (46%), Positives = 123/195 (63%), Gaps = 4/195 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P FE+E RE VAG+DEVGRG AGPV A++LDP +P G+NDSKK+S +R+ Sbjct: 3 PDFEIE---RELGGL-VAGVDEVGRGPWAGPVTACAVVLDPMQVPDGLNDSKKLSEARRD 58 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L +I A +S+ AS + ID NI +AT A+ A++ L P ALIDG +IP L Sbjct: 59 ALAMQILRVADVSLGWASVEEIDALNIRQATFLAMRRAMDGLTTPPTHALIDGNAIPPGL 118 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C A V+KGD S+SIAAASI+AKV RD LM+ +P YG+++++GY TAKH + Sbjct: 119 SCPATCVVKGDGRSVSIAAASIVAKVRRDALMKELAVMHPGYGWETNMGYGTAKHAAGLH 178 Query: 190 EKGPSCIHRLTFRPL 204 G + HR +F P+ Sbjct: 179 HLGVTQYHRRSFAPI 193 >gi|78066784|ref|YP_369553.1| ribonuclease HII [Burkholderia sp. 383] gi|97182346|sp|Q39F57|RNH2_BURS3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|77967529|gb|ABB08909.1| Ribonuclease H [Burkholderia sp. 383] Length = 214 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 90/181 (49%), Positives = 121/181 (66%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LYE I + ++ ++ Sbjct: 28 VCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLDDSKALSAKKRDALYELIVARSLSYCVA 87 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS ID NI AT+ A+ AVE L V+P A IDG P L +A A++ GD++ Sbjct: 88 SASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LTVRAEAIVSGDALVP 146 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI+AASI+AKVTRDR++ H+++P YGF+ H GY TAKH ++E GP HR +F P+ Sbjct: 147 SISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAHRRSFAPV 206 Query: 205 R 205 R Sbjct: 207 R 207 >gi|115352089|ref|YP_773928.1| ribonuclease HII [Burkholderia ambifaria AMMD] gi|122322850|sp|Q0BE29|RNH2_BURCM RecName: Full=Ribonuclease HII; Short=RNase HII gi|115282077|gb|ABI87594.1| Ribonuclease H [Burkholderia ambifaria AMMD] Length = 217 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 89/182 (48%), Positives = 121/182 (66%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LY+ I + A ++ Sbjct: 28 VCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKALSAKKRDALYDLIVARASAFCVA 87 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS ID NI AT+ A+ AVE L V+P A IDG P L +A A++ GD++ Sbjct: 88 SASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LTVRAEAIVSGDALVP 146 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI+AASI+AKVTRDR++ H+++P YGF+ HVGY T +H ++E GP +HR +F P+ Sbjct: 147 SISAASILAKVTRDRMLVDLHERFPVYGFNMHVGYSTPQHLAALREHGPCEVHRRSFAPV 206 Query: 205 RN 206 R Sbjct: 207 RE 208 >gi|116492734|ref|YP_804469.1| ribonuclease HII [Pediococcus pentosaceus ATCC 25745] gi|122265802|sp|Q03FJ5|RNH2_PEDPA RecName: Full=Ribonuclease HII; Short=RNase HII gi|116102884|gb|ABJ68027.1| Ribonuclease HII [Pediococcus pentosaceus ATCC 25745] Length = 255 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 94/191 (49%), Positives = 122/191 (63%), Gaps = 8/191 (4%) Query: 20 EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E+ +W VAGIDEVGRG LAGPVV A+++LD +NDSK++S + REELY K Sbjct: 61 ERELWSNGIDLVAGIDEVGRGCLAGPVVTASVVLDETFDLIDVNDSKQLSSELREELYAK 120 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I + A+ + I S+Q ID+ NI AT A+ AV NL V P+ LID + P ++P Sbjct: 121 ILTEAVSVGIGVCSNQKIDEVNILNATKLAMREAVGNLNVTPQHLLIDAVNAPIEIP--K 178 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 + KGDS S+SIAAASI+AKV RD LMR YP YGFD +VGY T +H + +K G Sbjct: 179 TVMFKGDSKSISIAAASIVAKVYRDHLMRSYAALYPGYGFDKNVGYGTKQHIEGLKTYGV 238 Query: 194 SCIHRLTFRPL 204 + IHR TF P+ Sbjct: 239 TPIHRQTFEPV 249 >gi|56416548|ref|YP_153622.1| ribonuclease HII [Anaplasma marginale str. St. Maries] gi|56387780|gb|AAV86367.1| ribonuclease HII [Anaplasma marginale str. St. Maries] Length = 339 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 2/201 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKK 67 P F +E +R + + G+DEVG GA+AGPVV AA+ L + I DSK +S KK Sbjct: 105 PSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKALSSKK 164 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 REEL+ KIT+ A + A + I++HNI A+ ++ A++NL V L+DG P Sbjct: 165 REELFCKITAHAKYGVGFARVREIEQHNILVASHISMKRALQNLGVKADLVLVDGSRAPA 224 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP ++KGDSIS SIAAASIIAKVTRDR MR H++YP+Y ++ + GY T H Q Sbjct: 225 GLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKAHMQS 284 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 +K G + HR TF P++ LS Sbjct: 285 LKLYGKTAQHRSTFAPVKQLS 305 >gi|328467373|gb|EGF38451.1| ribonuclease HII [Lactobacillus helveticus MTCC 5463] Length = 249 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 96/196 (48%), Positives = 124/196 (63%), Gaps = 7/196 (3%) Query: 14 LEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 LE EK W VAG+DEVGRG LAGPVV AA+I+D N +NDSKK+S +KR Sbjct: 52 LERFSYEKQFWQKDELVAGVDEVGRGPLAGPVVTAAVIIDHNFDLLEVNDSKKLSPEKRL 111 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +LY KI S A+ + I S ID+ NI++A A+ AV+ L V P + L+D ++P D Sbjct: 112 QLYPKILSEAVSVGIGVKSAAVIDQINIYEADRQAMAQAVKALDVKPNALLVDAMNVPVD 171 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LP +IKGD+ S SIAAASI+AKV RD+LM K YP YGF + GY T +H + Sbjct: 172 LP--QIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFPRNAGYGTKEHIDAL 229 Query: 189 KEKGPSCIHRLTFRPL 204 K+ GP+ IHR TF P+ Sbjct: 230 KKYGPTPIHRKTFAPV 245 >gi|222474916|ref|YP_002563331.1| ribonuclease HII (rnhB) [Anaplasma marginale str. Florida] gi|222419052|gb|ACM49075.1| ribonuclease HII (rnhB) [Anaplasma marginale str. Florida] Length = 339 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 2/201 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKK 67 P F +E +R + + G+DEVG GA+AGPVV AA+ L + I DSK +S KK Sbjct: 105 PSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKALSSKK 164 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 REEL+ KIT+ A + A + I++HNI A+ ++ A++NL V L+DG P Sbjct: 165 REELFCKITAHARYGVGFARVREIEQHNILVASHISMKRALQNLGVKADLVLVDGSRAPA 224 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP ++KGDSIS SIAAASIIAKVTRDR MR H++YP+Y ++ + GY T H Q Sbjct: 225 GLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKAHMQS 284 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 +K G + HR TF P++ LS Sbjct: 285 LKLYGKTAQHRSTFAPVKQLS 305 >gi|167586869|ref|ZP_02379257.1| ribonuclease HII [Burkholderia ubonensis Bu] Length = 214 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 91/181 (50%), Positives = 120/181 (66%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS-SAIISIS 84 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LYE I + S ++ Sbjct: 28 VCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLDDSKALSAKKRDALYELIVARSRAYCVA 87 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS ID NI AT+ A+ AVE L V+P A IDG P L +A A++ GD++ Sbjct: 88 SASVDEIDTLNILHATMLAMKRAVEGLAVVPTLAQIDGNRCPT-LSVRAEAIVSGDALVP 146 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI+AASI+AKVTRDR++ H+++P YGF+ H GY TAKH ++E GP HR +F P+ Sbjct: 147 SISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAHRRSFAPV 206 Query: 205 R 205 R Sbjct: 207 R 207 >gi|260913166|ref|ZP_05919648.1| ribonuclease HII [Pasteurella dagmatis ATCC 43325] gi|260632753|gb|EEX50922.1| ribonuclease HII [Pasteurella dagmatis ATCC 43325] Length = 197 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 91/183 (49%), Positives = 118/183 (64%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKR L E+I A+ S+ Sbjct: 12 IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLNDSKKLSEKKRLALAEEIKQKALAWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AVENL++ P L+DG +P D+ A A++KGDS+ Sbjct: 72 RAEPEEIDELNILHATMLAMKRAVENLKIQPHLVLVDGNRVP-DVVMPAQAIVKGDSLVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD M K+YP Y F H GYPT H + + E GP HR +F P+ Sbjct: 131 EISAASILAKVARDHEMEELDKQYPQYAFAKHKGYPTKLHLEKLAEFGPLPEHRRSFSPV 190 Query: 205 RNL 207 R L Sbjct: 191 RKL 193 >gi|212212281|ref|YP_002303217.1| ribonuclease HII [Coxiella burnetii CbuG_Q212] gi|238056775|sp|B6IZE4|RNH2_COXB2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|212010691|gb|ACJ18072.1| ribonuclease HII [Coxiella burnetii CbuG_Q212] Length = 202 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 91/185 (49%), Positives = 120/185 (64%), Gaps = 2/185 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84 +AG+DE GRG LAGPV+ AA+IL+P I G+ DSKK+S KKREELYEKI T+ +I+ Sbjct: 14 IAGVDEAGRGPLAGPVITAAVILNPEIIIEGLADSKKLSLKKREELYEKIITNCKAFAIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI +ATL A+ A+ L + P LIDG P DLP + A+++GD Sbjct: 74 RADVEEIDRLNIFRATLLAMQRAINQLSIQPDKVLIDGHCCP-DLPYETQAIVQGDQNVP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKVTRDR M +YPDYGF H GY T H I G + +HR +F P+ Sbjct: 133 AISAASILAKVTRDREMLKYDAQYPDYGFAIHKGYGTKAHLAAIHRFGITPVHRKSFEPV 192 Query: 205 RNLSV 209 R L + Sbjct: 193 RQLKL 197 >gi|29654636|ref|NP_820328.1| ribonuclease HII [Coxiella burnetii RSA 493] gi|153208943|ref|ZP_01947156.1| ribonuclease HII [Coxiella burnetii 'MSU Goat Q177'] gi|154706026|ref|YP_001424775.1| ribonuclease HII [Coxiella burnetii Dugway 5J108-111] gi|161830417|ref|YP_001597185.1| ribonuclease HII [Coxiella burnetii RSA 331] gi|165924003|ref|ZP_02219835.1| ribonuclease HII [Coxiella burnetii RSA 334] gi|212218749|ref|YP_002305536.1| ribonuclease HII [Coxiella burnetii CbuK_Q154] gi|39932366|sp|Q83BZ8|RNH2_COXBU RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043589|sp|A9KGD3|RNH2_COXBN RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043590|sp|A9N8L5|RNH2_COXBR RecName: Full=Ribonuclease HII; Short=RNase HII gi|238056774|sp|B6J7Z2|RNH2_COXB1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|29541904|gb|AAO90842.1| ribonuclease HII [Coxiella burnetii RSA 493] gi|120575601|gb|EAX32225.1| ribonuclease HII [Coxiella burnetii 'MSU Goat Q177'] gi|154355312|gb|ABS76774.1| ribonuclease HII [Coxiella burnetii Dugway 5J108-111] gi|161762284|gb|ABX77926.1| ribonuclease HII [Coxiella burnetii RSA 331] gi|165916548|gb|EDR35152.1| ribonuclease HII [Coxiella burnetii RSA 334] gi|212013011|gb|ACJ20391.1| ribonuclease HII [Coxiella burnetii CbuK_Q154] Length = 202 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 91/185 (49%), Positives = 120/185 (64%), Gaps = 2/185 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84 +AG+DE GRG LAGPV+ AA+IL+P I G+ DSKK+S KKREELYEKI T+ +I+ Sbjct: 14 IAGVDEAGRGPLAGPVITAAVILNPEIIIEGLADSKKLSLKKREELYEKIITNCKAFAIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI +ATL A+ A+ L + P LIDG P DLP + A+++GD Sbjct: 74 RADVEEIDRLNIFRATLLAMQRAINQLSIQPDKVLIDGHCCP-DLPYETQAIVQGDQNVP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKVTRDR M +YPDYGF H GY T H I G + +HR +F P+ Sbjct: 133 AISAASILAKVTRDREMLKYDAQYPDYGFAIHKGYGTKAHLAAIHRFGITPVHRKSFEPV 192 Query: 205 RNLSV 209 R L + Sbjct: 193 RQLKL 197 >gi|15603863|ref|NP_246937.1| ribonuclease HII [Pasteurella multocida subsp. multocida str. Pm70] gi|13431849|sp|P57986|RNH2_PASMU RecName: Full=Ribonuclease HII; Short=RNase HII gi|12722439|gb|AAK04082.1| RnhB [Pasteurella multocida subsp. multocida str. Pm70] Length = 197 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 91/188 (48%), Positives = 120/188 (63%), Gaps = 2/188 (1%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 K + +AG+DEVGRG L G VV AA+ILDP+ G+NDSKK+S KKR L E+I A+ Sbjct: 7 KGVELIAGVDEVGRGPLVGAVVTAAVILDPHQPILGLNDSKKLSEKKRLLLAEEIKQKAL 66 Query: 81 I-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 S+ A + ID+ NI AT+ A+ AVENL++ P L+DG +PE L A A++KG Sbjct: 67 AWSLGRAEAEEIDQLNILHATMLAMKRAVENLKIQPHFVLVDGNRVPE-LMIPAQAIVKG 125 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D + I+AASI+AKV RD+ M K+YP+Y F H GYPTA H + E GP HR Sbjct: 126 DGLVAEISAASILAKVARDQEMAELDKRYPEYAFAQHKGYPTALHLAKLAELGPLAQHRR 185 Query: 200 TFRPLRNL 207 +F P+R L Sbjct: 186 SFAPVRKL 193 >gi|77457342|ref|YP_346847.1| ribonuclease HII [Pseudomonas fluorescens Pf0-1] gi|97189197|sp|Q3KH98|RNH2_PSEPF RecName: Full=Ribonuclease HII; Short=RNase HII gi|77381345|gb|ABA72858.1| ribonuclease HII [Pseudomonas fluorescens Pf0-1] Length = 213 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 95/196 (48%), Positives = 124/196 (63%), Gaps = 6/196 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F L A V E VAG+DEVGRG L G VV AA+ILDPN G+NDSKK++ KRE+L Sbjct: 12 FTLVAEVEEL----VAGVDEVGRGPLCGAVVTAAVILDPNRPILGLNDSKKLTEAKREKL 67 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y++I A+ I+ A + ID+ NI AT+ A+ AV L + P+ A+IDG P+ LP Sbjct: 68 YDEICEKALSWCIARAEVEEIDELNILHATMLAMQRAVAGLHIQPKLAMIDGNRCPK-LP 126 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++ AV+KGDS +IAAASI+AKV+RDR M YP YG H GYPT H + + Sbjct: 127 MRSEAVVKGDSKVPAIAAASILAKVSRDREMAAFELIYPGYGISGHKGYPTPVHLEALVR 186 Query: 191 KGPSCIHRLTFRPLRN 206 GP+ IHR +F P+R Sbjct: 187 LGPTPIHRRSFAPVRQ 202 >gi|172060953|ref|YP_001808605.1| ribonuclease HII [Burkholderia ambifaria MC40-6] gi|238689161|sp|B1YS60|RNH2_BURA4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|171993470|gb|ACB64389.1| Ribonuclease H [Burkholderia ambifaria MC40-6] Length = 217 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 89/182 (48%), Positives = 121/182 (66%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LY+ I + A ++ Sbjct: 28 VCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKALSAKKRDALYDLIVARASAFCVA 87 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS ID NI AT+ A+ AVE L V+P A IDG P L +A A++ GD++ Sbjct: 88 SASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LTVRAEAIVSGDALVP 146 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI+AASI+AKVTRDR++ H+++P YGF+ HVGY T +H ++E GP +HR +F P+ Sbjct: 147 SISAASILAKVTRDRMLVDLHERFPVYGFNVHVGYSTPQHLAALREHGPCEVHRRSFAPV 206 Query: 205 RN 206 R Sbjct: 207 RE 208 >gi|46446292|ref|YP_007657.1| ribonuclease HII [Candidatus Protochlamydia amoebophila UWE25] gi|81627372|sp|Q6MDG7|RNH2_PARUW RecName: Full=Ribonuclease HII; Short=RNase HII gi|46399933|emb|CAF23382.1| putative ribonuclease HII [Candidatus Protochlamydia amoebophila UWE25] Length = 222 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 89/185 (48%), Positives = 123/185 (66%), Gaps = 5/185 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII--SI 83 +AGIDE GRG LAGPVV AA IL + INDSKK+S K RE L+E++T+ + + I Sbjct: 31 IAGIDEAGRGPLAGPVVAAACILPKGLLVPQINDSKKLSPKVRERLFERLTTDSAVRYGI 90 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSI 142 ID+ NI++AT+ A+ A++ L V P L+DG ++P DLPC +IKGD + Sbjct: 91 GIIGQAEIDRVNIYQATILAMLMAIQQLPVTPDYVLVDGMNLPHPDLPC--LKIIKGDQL 148 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 S SIAAASIIAK TRDRLM H+++P YGF+ H GY T H + + ++GP IHR +F Sbjct: 149 SQSIAAASIIAKETRDRLMCQYHREWPGYGFNQHKGYATELHLEALFKQGPCPIHRRSFD 208 Query: 203 PLRNL 207 P++++ Sbjct: 209 PIKSM 213 >gi|294793773|ref|ZP_06758910.1| ribonuclease HII [Veillonella sp. 3_1_44] gi|294455343|gb|EFG23715.1| ribonuclease HII [Veillonella sp. 3_1_44] Length = 279 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 86/197 (43%), Positives = 130/197 (65%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ E M ++ ++ VAG+DEVGRG +AGPV VAA+IL P + G+NDSKK++ +KRE L Sbjct: 77 YDYEGMFYDQGIYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREAL 136 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ +S + ID+ NI++AT A+Y A+ L V + + D +P DL Sbjct: 137 YDIIMDEAVAVSCIFYGPEKIDELNIYEATRQAMYEAIRTLSVPAEAVVADAMKLP-DLR 195 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGDS S +IAAAS+IAKVTRDR M+ +YP YGF H GY T H++ I++ Sbjct: 196 IPVESIIKGDSKSANIAAASVIAKVTRDRYMKSLDDEYPGYGFGIHKGYYTELHKEAIEQ 255 Query: 191 KGPSCIHRLTFRPLRNL 207 +G + +HR +F P++++ Sbjct: 256 QGVTPLHRKSFEPIKSI 272 >gi|197286117|ref|YP_002151989.1| ribonuclease HII [Proteus mirabilis HI4320] gi|227357236|ref|ZP_03841593.1| ribonuclease HII [Proteus mirabilis ATCC 29906] gi|238690094|sp|B4F256|RNH2_PROMH RecName: Full=Ribonuclease HII; Short=RNase HII gi|194683604|emb|CAR44495.1| ribonuclease HII [Proteus mirabilis HI4320] gi|227162499|gb|EEI47488.1| ribonuclease HII [Proteus mirabilis ATCC 29906] Length = 196 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 90/181 (49%), Positives = 116/181 (64%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK++ KKR LY++I A+ +I Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPANPIQGLMDSKKLTEKKRNALYDEIKEKALCWAIG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + IDK NI AT+ A+ AV L + P L+DG P +LP + AVIKGDS+ Sbjct: 71 RAEPEEIDKLNILWATMKAMERAVAGLSITPDMVLVDGNRCP-NLPMASQAVIKGDSLVQ 129 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M K YPDYGF H GYPTA H + + G + HR +F P+ Sbjct: 130 EISAASILAKVTRDREMEQLDKLYPDYGFAKHKGYPTAFHMEKLASLGATPYHRKSFAPV 189 Query: 205 R 205 + Sbjct: 190 K 190 >gi|212636263|ref|YP_002312788.1| ribonuclease HII [Shewanella piezotolerans WP3] gi|226736824|sp|B8CQ71|RNH2_SHEPW RecName: Full=Ribonuclease HII; Short=RNase HII gi|212557747|gb|ACJ30201.1| Ribonuclease H [Shewanella piezotolerans WP3] Length = 202 Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 88/181 (48%), Positives = 119/181 (65%), Gaps = 2/181 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DEVGRG L G VV AA+ILDP+N G+NDSKK+S KKRE L+ +I A+ +S+ + Sbjct: 21 AGVDEVGRGPLIGNVVTAAVILDPHNPIVGLNDSKKLSEKKRELLFNQIQEKALSVSVGA 80 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A+ ID+ NI AT+ A+ AV L + P S L+DG P D Q+ A+IKGD + + Sbjct: 81 ATPAEIDEINILHATMMAMQRAVAGLSIKPTSVLVDGNRCP-DFGMQSHAIIKGDGLIDA 139 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AKV RDR M +YP+YGF+ H GYPT H + + + G HR +FRP+R Sbjct: 140 ISAASIVAKVVRDREMEALAAQYPEYGFEKHKGYPTKAHFEALAKYGILAEHRKSFRPVR 199 Query: 206 N 206 Sbjct: 200 E 200 >gi|197336053|ref|YP_002156776.1| ribonuclease HII [Vibrio fischeri MJ11] gi|238690074|sp|B5F9W2|RNH2_VIBFM RecName: Full=Ribonuclease HII; Short=RNase HII gi|197317543|gb|ACH66990.1| ribonuclease HII [Vibrio fischeri MJ11] Length = 207 Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 90/182 (49%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85 AG+DEVGRG L G VV AA+ILDPNN G+ DSKK++ KKRE L+ +I A+ S+ Sbjct: 23 AGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTDKKRELLFPEIQEKALAWSLGR 82 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ID+ NI +AT+ A+ A+ L + P ALIDG +PE LP AV+KGD Sbjct: 83 CEAHEIDELNILQATMVAMQRAIAGLNITPDFALIDGNKVPE-LPMAGLAVVKGDLRVQE 141 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASIIAKVTRDR M K YP YGF H GYPT H + I+E G HR +F+P++ Sbjct: 142 ISAASIIAKVTRDREMEELDKAYPQYGFAKHKGYPTKAHFEAIEEHGVISEHRRSFKPVK 201 Query: 206 NL 207 + Sbjct: 202 RV 203 >gi|59712555|ref|YP_205331.1| ribonuclease HII [Vibrio fischeri ES114] gi|73917836|sp|Q5E3F3|RNH2_VIBF1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|59480656|gb|AAW86443.1| ribonuclease HII [Vibrio fischeri ES114] Length = 207 Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 90/182 (49%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85 AG+DEVGRG L G VV AA+ILDPNN G+ DSKK++ KKRE L+ +I A+ S+ Sbjct: 23 AGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTDKKRELLFPEIQEKALAWSLGR 82 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ID+ NI +AT+ A+ A+ L + P ALIDG +PE LP AV+KGD Sbjct: 83 CEAHEIDELNILQATMVAMQRAIAGLNITPDFALIDGNKVPE-LPMAGLAVVKGDLRVQE 141 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASIIAKVTRDR M K YP YGF H GYPT H + I+E G HR +F+P++ Sbjct: 142 ISAASIIAKVTRDREMEELDKAYPQYGFAKHKGYPTKAHFEAIEEHGVISEHRRSFKPVK 201 Query: 206 NL 207 + Sbjct: 202 RV 203 >gi|227903862|ref|ZP_04021667.1| ribonuclease HII [Lactobacillus acidophilus ATCC 4796] gi|227868253|gb|EEJ75674.1| ribonuclease HII [Lactobacillus acidophilus ATCC 4796] Length = 252 Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 92/199 (46%), Positives = 126/199 (63%), Gaps = 7/199 (3%) Query: 14 LEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 LE + EK W VAG+DEVGRG LAGPVV AA+I+D + +NDSKK+S +KR Sbjct: 54 LERFLYEKQFWQKGQLVAGVDEVGRGPLAGPVVTAAVIIDQDFDLLDVNDSKKLSPEKRL 113 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +LY KI A+ +++ + Q ID+ NI++A A+ AV L + P + L+D ++P D Sbjct: 114 KLYPKILEEAVSVAVGVKNAQVIDQINIYEADRQAMAQAVNALDIKPDALLVDAMNVPVD 173 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LP +IKGD+ S SIAAASI+AKV RD+LM K YP YGF + GY T +H + Sbjct: 174 LP--QIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPHYGFSRNAGYGTKEHIDAL 231 Query: 189 KEKGPSCIHRLTFRPLRNL 207 K+ GP+ IHR TF P+ + Sbjct: 232 KQYGPTHIHRKTFAPVSDF 250 >gi|114764188|ref|ZP_01443426.1| ribonuclease HII [Pelagibaca bermudensis HTCC2601] gi|114543340|gb|EAU46356.1| ribonuclease HII [Roseovarius sp. HTCC2601] Length = 215 Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 89/182 (48%), Positives = 128/182 (70%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 VAG+DEVGRG LAGPVV AA++LDP IP G+NDSKK+S K+R L + A +SI Sbjct: 25 VAGVDEVGRGPLAGPVVAAAVVLDPLCIPPGLNDSKKLSAKRRARLAGWLHECAEVSIGV 84 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A+ + ID+ NI +A+L A++ AV L+ + AL+DGR IP LPC A +IKGD S+S Sbjct: 85 ATVEEIDELNILQASLLAMHRAVTGLKRPAQHALVDGRFIPPQLPCHATPIIKGDGRSVS 144 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 IAAAS++AK RDRLMR +++P YG++++ GY + KH++ ++ G + HR +F+P+ Sbjct: 145 IAAASVVAKCYRDRLMRDLAQQHPGYGWETNAGYGSKKHKEALQNLGVTPHHRRSFKPIH 204 Query: 206 NL 207 N+ Sbjct: 205 NI 206 >gi|295426276|ref|ZP_06818936.1| ribonuclease HII [Lactobacillus amylolyticus DSM 11664] gi|295064015|gb|EFG54963.1| ribonuclease HII [Lactobacillus amylolyticus DSM 11664] Length = 251 Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 96/199 (48%), Positives = 125/199 (62%), Gaps = 7/199 (3%) Query: 14 LEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 LE EK W VAG+DEVGRG LAGPVV AA+I+D + +NDSKK+S +KR Sbjct: 53 LERFTYEKKFWQKGQIVAGVDEVGRGPLAGPVVTAAVIIDDHFDLLDVNDSKKLSPQKRL 112 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 LY KI S AI +++ S Q ID+ NI++A A+ AV +L P + L+D ++P D Sbjct: 113 ALYPKILSEAISVAVGVKSPQVIDQINIYEADRQAMAEAVLDLDQKPDALLVDAMNVPVD 172 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LP +IKGD+ S SIAAASI+AKV RD+LM K YP Y F + GY TAKH + Sbjct: 173 LP--QVKLIKGDAKSNSIAAASIVAKVFRDKLMDDYAKIYPQYDFPDNAGYGTAKHLAAL 230 Query: 189 KEKGPSCIHRLTFRPLRNL 207 K+ GP+ IHR TF P+ + Sbjct: 231 KKYGPTPIHRKTFAPVSDF 249 >gi|58337276|ref|YP_193861.1| ribonuclease HII [Lactobacillus acidophilus NCFM] gi|73917609|sp|Q5FKE4|RNH2_LACAC RecName: Full=Ribonuclease HII; Short=RNase HII gi|58254593|gb|AAV42830.1| Ribonuclease HII [Lactobacillus acidophilus NCFM] Length = 250 Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 92/199 (46%), Positives = 126/199 (63%), Gaps = 7/199 (3%) Query: 14 LEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 LE + EK W VAG+DEVGRG LAGPVV AA+I+D + +NDSKK+S +KR Sbjct: 52 LERFLYEKQFWQKGQLVAGVDEVGRGPLAGPVVTAAVIIDQDFDLLDVNDSKKLSPEKRL 111 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +LY KI A+ +++ + Q ID+ NI++A A+ AV L + P + L+D ++P D Sbjct: 112 KLYPKILEEAVSVAVGVKNAQVIDQINIYEADRQAMAQAVNALDIKPDALLVDAMNVPVD 171 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LP +IKGD+ S SIAAASI+AKV RD+LM K YP YGF + GY T +H + Sbjct: 172 LP--QIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPHYGFSRNAGYGTKEHIDAL 229 Query: 189 KEKGPSCIHRLTFRPLRNL 207 K+ GP+ IHR TF P+ + Sbjct: 230 KQYGPTHIHRKTFAPVSDF 248 >gi|209695837|ref|YP_002263767.1| ribonuclease HII [Aliivibrio salmonicida LFI1238] gi|238056773|sp|B6EJW6|RNH2_ALISL RecName: Full=Ribonuclease HII; Short=RNase HII gi|208009790|emb|CAQ80097.1| ribonuclease HII [Aliivibrio salmonicida LFI1238] Length = 207 Score = 165 bits (417), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 117/182 (64%), Gaps = 2/182 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85 AG+DEVGRG L G VV AA+ILDPNN G+ DSKK++ KKR+ L+ +I A+ S+ Sbjct: 23 AGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTEKKRDLLFPEIQEKALAWSLGR 82 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ID+ NI +AT+ A+ A+ L+V P ALIDG +PE LP AV+KGD Sbjct: 83 CEAHEIDELNILQATMVAMQRAIAGLKVTPDFALIDGNKVPE-LPMAGLAVVKGDLRVQE 141 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AKVTRDR M + K++P YGF H GYPT H I+E G HR +F+P++ Sbjct: 142 ISAASILAKVTRDREMEVLDKEFPQYGFAKHKGYPTKAHFAAIEEHGVISEHRRSFKPVK 201 Query: 206 NL 207 + Sbjct: 202 RV 203 >gi|160900366|ref|YP_001565948.1| ribonuclease HII [Delftia acidovorans SPH-1] gi|238687159|sp|A9BML8|RNH2_DELAS RecName: Full=Ribonuclease HII; Short=RNase HII gi|160365950|gb|ABX37563.1| Ribonuclease H [Delftia acidovorans SPH-1] Length = 235 Score = 165 bits (417), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 91/180 (50%), Positives = 122/180 (67%), Gaps = 2/180 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DE GRG LAGPVV AA+ILD N G+NDSKK++ +RE LY++I + A+ SI+ Sbjct: 25 VAGVDEAGRGPLAGPVVAAAVILDDLNPIEGLNDSKKLTAARREALYDEIRAKALCCSIA 84 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID+ NI +ATL A+ AV L++ P L+DG +P L QA A++KGDS+ Sbjct: 85 EASVEEIDRLNILQATLLAMRRAVLGLRLKPVLVLVDGNQLPV-LDVQAEAIVKGDSLVQ 143 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKVTRDR H++YP+YGFD H GY TA H ++ G HR TF P+ Sbjct: 144 AISAASILAKVTRDRWCERLHEQYPEYGFDGHKGYGTAAHLAALRLHGACEEHRRTFAPV 203 >gi|227551191|ref|ZP_03981240.1| ribonuclease H [Enterococcus faecium TX1330] gi|257887692|ref|ZP_05667345.1| ribonuclease HII [Enterococcus faecium 1,141,733] gi|257896186|ref|ZP_05675839.1| ribonuclease HII [Enterococcus faecium Com12] gi|293377187|ref|ZP_06623395.1| ribonuclease HII [Enterococcus faecium PC4.1] gi|227179659|gb|EEI60631.1| ribonuclease H [Enterococcus faecium TX1330] gi|257823746|gb|EEV50678.1| ribonuclease HII [Enterococcus faecium 1,141,733] gi|257832751|gb|EEV59172.1| ribonuclease HII [Enterococcus faecium Com12] gi|292644207|gb|EFF62309.1| ribonuclease HII [Enterococcus faecium PC4.1] Length = 255 Score = 165 bits (417), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 96/207 (46%), Positives = 130/207 (62%), Gaps = 13/207 (6%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 MFC FE + + + W +AGIDEVGRG LAGPVV AA+IL N I G+NDS Sbjct: 58 MFC--------FEKQGYA-QGHQW-IAGIDEVGRGPLAGPVVAAAVILPKNEIILGLNDS 107 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 K++S KKRE L ++I A+ I I Q ID+ NI++A+ A+ AVENL + P L Sbjct: 108 KQLSEKKRELLSQQIQEKALAIGIGIIDQQTIDEVNIYEASKLAMIQAVENLSIAPSYLL 167 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 ID ++ DL Q +IKGD+ S+SIAAASIIAKV RD+LM+ YP YGF + GY Sbjct: 168 IDAMTL--DLSIQQEKIIKGDARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGY 225 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRN 206 T +H + ++ +G + IHR +F P++ Sbjct: 226 GTKEHLEGLERQGITPIHRKSFAPVKK 252 >gi|85711419|ref|ZP_01042478.1| Ribonuclease HII [Idiomarina baltica OS145] gi|85694920|gb|EAQ32859.1| Ribonuclease HII [Idiomarina baltica OS145] Length = 188 Score = 165 bits (417), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 90/182 (49%), Positives = 118/182 (64%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + G+DE GRG +AGPVV AA+ILDP G+NDSKK+S KKRE L E+I + A+ SI+ Sbjct: 2 ICGVDEAGRGPIAGPVVAAAVILDPEQPIEGLNDSKKLSAKKRERLSEEIKAKALYWSIA 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + ID+ NI A++ A+ AVE L P L+DG +P DL A AV+ GD+ Sbjct: 62 QSDVDEIDQLNILWASMLAMKRAVEALPEAPTEVLVDGNRVP-DLVVPARAVVGGDASEP 120 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV RDR M H+ YP Y FD H Y TA+H +++K GP IHR +FRP+ Sbjct: 121 TIAAASILAKVERDRQMLEWHQTYPQYEFDRHKAYGTARHLELLKLYGPCVIHRRSFRPV 180 Query: 205 RN 206 R Sbjct: 181 RE 182 >gi|328544974|ref|YP_004305083.1| ribonuclease HII [polymorphum gilvum SL003B-26A1] gi|326414716|gb|ADZ71779.1| Ribonuclease HII [Polymorphum gilvum SL003B-26A1] Length = 219 Score = 165 bits (417), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 90/201 (44%), Positives = 128/201 (63%), Gaps = 2/201 (0%) Query: 6 IPERPHFELEAMVREKNMWP--VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 +P P F+ R ++ +AG+DE GRG AGPVV AA++LD +P G++DSK++ Sbjct: 12 LPFGPSFDATLEERHAALFGGRLAGVDEAGRGPWAGPVVTAAVVLDYRRLPAGLDDSKRL 71 Query: 64 SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 S +RE LYE+I +SA ++++SA ID+ NI ATL A+ AV+ L + LIDGR Sbjct: 72 SEVQREALYEEICASACVAVASACPTSIDRDNIRTATLAAMTRAVDALALTAGIVLIDGR 131 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P L + A++KGD L++AAASI+AKVTRDR+MR+ P YGF +H GY Sbjct: 132 DVPPGLAGRGQALVKGDQRCLAVAAASIVAKVTRDRMMRLLDGCCPGYGFSAHKGYGVPA 191 Query: 184 HQQVIKEKGPSCIHRLTFRPL 204 H Q + GPS HRL+F+P+ Sbjct: 192 HAQALLRLGPSPHHRLSFKPV 212 >gi|146281925|ref|YP_001172078.1| ribonuclease HII [Pseudomonas stutzeri A1501] gi|166226642|sp|A4VJT5|RNH2_PSEU5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|145570130|gb|ABP79236.1| ribonuclease HII [Pseudomonas stutzeri A1501] gi|327480168|gb|AEA83478.1| ribonuclease HII [Pseudomonas stutzeri DSM 4166] Length = 212 Score = 165 bits (417), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 89/183 (48%), Positives = 119/183 (65%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L GPVV AA+ILDP G+NDSKK++ +RE L+++I A+ I+ Sbjct: 14 VAGVDEVGRGPLCGPVVTAAVILDPARPIEGLNDSKKLTEARREALFDEIREKAVAWCIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AVE L V PR ALIDG P+ L + VI+GD+ Sbjct: 74 RAEVEEIDQLNILHATMLAMQRAVEGLSVTPRLALIDGNRCPQ-LAVPSAPVIQGDAQVP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV+RDR M+ YP YG H GYPT H + ++ GP+ IHR +F P+ Sbjct: 133 AIAAASILAKVSRDREMQALDLCYPGYGLAGHKGYPTPSHLEALRRLGPTPIHRRSFAPV 192 Query: 205 RNL 207 R + Sbjct: 193 RAM 195 >gi|126738666|ref|ZP_01754371.1| ribonuclease HII [Roseobacter sp. SK209-2-6] gi|126720465|gb|EBA17171.1| ribonuclease HII [Roseobacter sp. SK209-2-6] Length = 205 Score = 165 bits (417), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 95/201 (47%), Positives = 128/201 (63%), Gaps = 2/201 (0%) Query: 8 ERPHFELEAMVREKNMWP-VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E+P LE R KN +P +AG+DEVGRG LAGPV AA+IL P G+NDSKK+S K Sbjct: 2 EQPDDSLEQTAR-KNGYPRIAGVDEVGRGPLAGPVTAAAVILPLEGYPQGLNDSKKLSAK 60 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 KR L E+I +A +SI+ AS + ID NI KA+ A+ AV L P LIDG IP Sbjct: 61 KRAVLAEEILQTAEVSIAEASVEEIDSINILKASHLAMERAVAALDPAPDYLLIDGNLIP 120 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 L A AVIKGD S+SIAAASI+AK RD M +++P YG++ + GYP+ +H++ Sbjct: 121 AGLTIPAEAVIKGDGKSVSIAAASIVAKEARDECMVDLAQQFPGYGWEKNAGYPSKQHRE 180 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 ++E G + HR +F+P+ + Sbjct: 181 ALQELGVTPHHRKSFKPVHKI 201 >gi|332289941|ref|YP_004420793.1| ribonuclease HII [Gallibacterium anatis UMN179] gi|330432837|gb|AEC17896.1| ribonuclease HII [Gallibacterium anatis UMN179] Length = 197 Score = 164 bits (416), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 89/186 (47%), Positives = 118/186 (63%), Gaps = 1/186 (0%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81 N +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S KKR+ L E+I A+ Sbjct: 8 NAKLIAGVDEVGRGPLVGAVVTAAVILDPERPITGLADSKKLSEKKRQLLAEEIKEKALA 67 Query: 82 -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 S+ A ID+ NI +AT+ A+ AV+ L + P LIDG IP L A AV+KGD Sbjct: 68 WSLGRAEAAEIDRINILQATMLAMCRAVQGLHIQPDFVLIDGNRIPSALKIAAQAVVKGD 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+ I+AASI+AKV RD+ M + H+KYP YGFD H GYPT H + +++ G HR + Sbjct: 128 SLVAEISAASILAKVARDQEMLLLHQKYPQYGFDRHKGYPTKLHLEALEKYGILAEHRQS 187 Query: 201 FRPLRN 206 F P++ Sbjct: 188 FAPVKK 193 >gi|149202924|ref|ZP_01879895.1| Ribonuclease H [Roseovarius sp. TM1035] gi|149143470|gb|EDM31506.1| Ribonuclease H [Roseovarius sp. TM1035] Length = 207 Score = 164 bits (416), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 87/198 (43%), Positives = 126/198 (63%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + +AG+DEVGRG LAGPV AA+ILDP NIP G+NDSKK+S +R Sbjct: 4 PDFTHERAALSEGYLRIAGVDEVGRGPLAGPVTAAAVILDPGNIPEGLNDSKKLSAARRA 63 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L E I +SA S++ AS ID+ NI +A A+ A+ L P LIDG IP L Sbjct: 64 ILCEAIHASAEASVAHASVAEIDQLNILRAAHLAMERAIAALDPQPDLVLIDGNLIPRGL 123 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A A+++GD++S+SIAAASI+AK+ RD++M +++P YG++ + GYP+ H++ + Sbjct: 124 TLPARAIVRGDAVSVSIAAASIVAKIRRDQIMWDLAQQFPGYGWERNAGYPSKSHREALL 183 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + HR +F+P+ N+ Sbjct: 184 NLGVTPHHRRSFKPVHNI 201 >gi|127513549|ref|YP_001094746.1| ribonuclease H [Shewanella loihica PV-4] gi|166226652|sp|A3QG89|RNH2_SHELP RecName: Full=Ribonuclease HII; Short=RNase HII gi|126638844|gb|ABO24487.1| RNase HII [Shewanella loihica PV-4] Length = 208 Score = 164 bits (416), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 88/183 (48%), Positives = 119/183 (65%), Gaps = 3/183 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DEVGRG L G VV AA++LDPNN G+NDSKK+S KKR+ LYE+I + A+ +S+ Sbjct: 21 AGVDEVGRGPLVGDVVTAAVVLDPNNPIEGLNDSKKLSEKKRDALYEEILAKALDVSVGR 80 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143 S ID+ NI AT+ A+ AV L+ P LIDG +P+ D + AVIKGD + Sbjct: 81 CSPLEIDELNILHATMLAMQRAVAGLRARPDRVLIDGNRVPDFTDETLEGHAVIKGDGLI 140 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKV RDR M ++YP+YGF H GYPT H + ++ G HR +FRP Sbjct: 141 PAISAASIVAKVVRDREMEALDERYPEYGFAKHKGYPTKAHFEALEAHGVLAEHRKSFRP 200 Query: 204 LRN 206 ++ Sbjct: 201 VKE 203 >gi|110677703|ref|YP_680710.1| ribonuclease HII [Roseobacter denitrificans OCh 114] gi|122973124|sp|Q16DB9|RNH2_ROSDO RecName: Full=Ribonuclease HII; Short=RNase HII gi|109453819|gb|ABG30024.1| ribonuclease HII [Roseobacter denitrificans OCh 114] Length = 198 Score = 164 bits (415), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 83/182 (45%), Positives = 127/182 (69%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 VAG+DEVGRG LAGPV AA++LDP NIP G+NDSK++S K+R L + + SSA IS+ Sbjct: 8 VAGVDEVGRGPLAGPVTAAAVVLDPANIPEGLNDSKQLSVKRRNLLGDALASSADISVGH 67 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS + I++HNI +A+ A+ A+ L++ P LIDG +P+ L +A V+KGD+ LS Sbjct: 68 ASVEEIEQHNILRASHMAMLRALAGLRLRPDFVLIDGAMVPQGLNLRAQPVVKGDTRCLS 127 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASIIAK+ RD++M +++P YG+++++GY + H ++ G + HR TF+P+ Sbjct: 128 ISAASIIAKIARDKIMVDLAQQHPGYGWETNMGYGSKSHISALRNLGVTPHHRRTFKPVH 187 Query: 206 NL 207 ++ Sbjct: 188 HM 189 >gi|282889844|ref|ZP_06298383.1| hypothetical protein pah_c004o257 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500418|gb|EFB42698.1| hypothetical protein pah_c004o257 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 232 Score = 164 bits (415), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 90/196 (45%), Positives = 123/196 (62%), Gaps = 5/196 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E R + VAG+DE GRG LAGPVV AA IL P G+NDSKK++ +KR +L+++ Sbjct: 29 EEKARRQGYKLVAGVDEAGRGPLAGPVVAAACILPPRFRVPGVNDSKKLTPQKRAQLFQE 88 Query: 75 ITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED-LPC 131 IT+ I + + + ID NI +AT+ A+ AV L P++ L+DG +P +PC Sbjct: 89 ITTHPKVIYGVGIVATEIIDTINILQATIQAMLDAVNQLSSQPQALLVDGLQLPHPVIPC 148 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 Q I GDS+SL IAAASIIAK TRDRLM +++P YGF H GY T +H ++E Sbjct: 149 QKL--IHGDSLSLCIAAASIIAKETRDRLMVELDQQWPAYGFAQHKGYGTQQHLDALREH 206 Query: 192 GPSCIHRLTFRPLRNL 207 GP IHR TF P++++ Sbjct: 207 GPCPIHRKTFEPIKSM 222 >gi|115526417|ref|YP_783328.1| ribonuclease HII [Rhodopseudomonas palustris BisA53] gi|122294758|sp|Q07I86|RNH2_RHOP5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|115520364|gb|ABJ08348.1| RNase HII [Rhodopseudomonas palustris BisA53] Length = 278 Score = 164 bits (415), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 1/195 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + ++ +WPVAG DE GRG LAGPVV AA++LDP IP G++DSKK++ +KRE Sbjct: 57 PSFRRERALLKRGIWPVAGCDEAGRGPLAGPVVAAAVVLDPKRIPKGLDDSKKLTAEKRE 116 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+E+I ++A +++ AS I++ NI +A+L A+ AV+ L P+ +DGR Sbjct: 117 ALFEEICATASFAVAYASPARIERDNILRASLWALARAVQALPEPPKHVFVDGRDK-IIT 175 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 PC AVI GD++ LSIAAASIIAKV RDRLM + P YGFD H GY +H + Sbjct: 176 PCDCDAVIGGDALVLSIAAASIIAKVARDRLMCRLAEDCPGYGFDHHKGYGVPEHLAALD 235 Query: 190 EKGPSCIHRLTFRPL 204 GP+ HR F P+ Sbjct: 236 RLGPTKHHRKLFAPV 250 >gi|254247897|ref|ZP_04941218.1| Ribonuclease HII [Burkholderia cenocepacia PC184] gi|124872673|gb|EAY64389.1| Ribonuclease HII [Burkholderia cenocepacia PC184] Length = 214 Score = 164 bits (415), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 91/181 (50%), Positives = 120/181 (66%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LY+ I T S ++ Sbjct: 28 VCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLDDSKVLSAKKRDALYDLIVTRSHAYCVA 87 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS ID NI AT+ A+ AVE L V+P A IDG P L +A A++ GD++ Sbjct: 88 SASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LSVRAEAIVSGDALVP 146 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI+AASI+AKVTRDR++ H+++P YGF+ H GY TAKH ++E GP HR +F P+ Sbjct: 147 SISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAHRRSFAPV 206 Query: 205 R 205 R Sbjct: 207 R 207 >gi|170733361|ref|YP_001765308.1| ribonuclease HII [Burkholderia cenocepacia MC0-3] gi|238688549|sp|B1JUD6|RNH2_BURCC RecName: Full=Ribonuclease HII; Short=RNase HII gi|169816603|gb|ACA91186.1| Ribonuclease H [Burkholderia cenocepacia MC0-3] Length = 214 Score = 164 bits (415), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 91/181 (50%), Positives = 120/181 (66%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LY+ I T S ++ Sbjct: 28 VCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLDDSKVLSAKKRDALYDLIVTRSHAYCVA 87 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS ID NI AT+ A+ AVE L V+P A IDG P L +A A++ GD++ Sbjct: 88 SASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LSVRAEAIVSGDALVP 146 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI+AASI+AKVTRDR++ H+++P YGF+ H GY TAKH ++E GP HR +F P+ Sbjct: 147 SISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAHRRSFAPV 206 Query: 205 R 205 R Sbjct: 207 R 207 >gi|107028815|ref|YP_625910.1| ribonuclease HII [Burkholderia cenocepacia AU 1054] gi|116690026|ref|YP_835649.1| ribonuclease HII [Burkholderia cenocepacia HI2424] gi|122977720|sp|Q1BHG8|RNH2_BURCA RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225172|sp|A0K8C9|RNH2_BURCH RecName: Full=Ribonuclease HII; Short=RNase HII gi|105897979|gb|ABF80937.1| Ribonuclease H [Burkholderia cenocepacia AU 1054] gi|116648115|gb|ABK08756.1| Ribonuclease H [Burkholderia cenocepacia HI2424] Length = 214 Score = 164 bits (415), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 91/181 (50%), Positives = 120/181 (66%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LY+ I T S ++ Sbjct: 28 VCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLDDSKVLSAKKRDALYDLIVTRSHAYCVA 87 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS ID NI AT+ A+ AVE L V+P A IDG P L +A A++ GD++ Sbjct: 88 SASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LSVRAEAIVSGDALVP 146 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI+AASI+AKVTRDR++ H+++P YGF+ H GY TAKH ++E GP HR +F P+ Sbjct: 147 SISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAHRRSFAPV 206 Query: 205 R 205 R Sbjct: 207 R 207 >gi|311068127|ref|YP_003973050.1| ribonuclease HII [Bacillus atrophaeus 1942] gi|310868644|gb|ADP32119.1| ribonuclease HII [Bacillus atrophaeus 1942] Length = 255 Score = 164 bits (415), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 88/193 (45%), Positives = 121/193 (62%), Gaps = 3/193 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + R K +AGIDEVGRG LAGPVV +A+IL G+ DSKK+S KKREE YE+ Sbjct: 63 ERLARNKGFCIIAGIDEVGRGPLAGPVVASAVILPAECEILGLTDSKKLSEKKREEYYER 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I + A+ + I ID+ NI++A+ A+ AV L P L+D ++P D+P Sbjct: 123 IMNEALGVGIGIIEASVIDEMNIYEASKLAMVKAVRELSEAPDYLLVDAMTLPLDIP--Q 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ S+SIAA + +AKVTRDR+M K YP YGF+ H GY T +H + + GP Sbjct: 181 SSIIKGDAKSVSIAAGACVAKVTRDRMMSEYAKTYPMYGFEKHKGYGTKEHLEALAAYGP 240 Query: 194 SCIHRLTFRPLRN 206 + IHR TF P++ Sbjct: 241 TDIHRRTFAPVQT 253 >gi|56698275|ref|YP_168648.1| ribonuclease HII [Ruegeria pomeroyi DSS-3] gi|81348925|sp|Q5LMW0|RNH2_SILPO RecName: Full=Ribonuclease HII; Short=RNase HII gi|56680012|gb|AAV96678.1| ribonuclease HII [Ruegeria pomeroyi DSS-3] Length = 234 Score = 164 bits (415), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 92/194 (47%), Positives = 130/194 (67%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P ++LEA + + +AG+DEVGRG LAGPVV AA++LDP IP G+NDSKK++ +R Sbjct: 32 QPDYQLEAALAAQGHIRIAGVDEVGRGPLAGPVVAAAVVLDPGAIPEGLNDSKKLTAARR 91 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E LY+ + ++A +SI+ AS + ID NI +A+ A+ AV L P LIDG IP Sbjct: 92 ERLYDILHANAQVSIAEASVEEIDALNILRASHLAMERAVAALNPAPDFLLIDGNLIPAG 151 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L C A AVIKGD S+SIAAASI+AK RDRLM +++P YG++ + GYPT +H+ + Sbjct: 152 LSCPAEAVIKGDGRSVSIAAASIVAKTWRDRLMVDLAQQHPGYGWERNAGYPTKEHRSAL 211 Query: 189 KEKGPSCIHRLTFR 202 + G + HR +F+ Sbjct: 212 QNLGVTPHHRRSFK 225 >gi|298290630|ref|YP_003692569.1| ribonuclease H [Starkeya novella DSM 506] gi|296927141|gb|ADH87950.1| Ribonuclease H [Starkeya novella DSM 506] Length = 221 Score = 164 bits (415), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 93/199 (46%), Positives = 124/199 (62%), Gaps = 1/199 (0%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 ++P F E + PVAG+DEVGRG LAGPVV A++LDP +P G++DSKK++ + Sbjct: 6 QKPDFSTERAAWKAGDVPVAGVDEVGRGPLAGPVVACAVVLDPKRVPKGLDDSKKLTAVQ 65 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 RE L+E I ++A +S++ A ID HNI +ATL A AV L PR L+DG P Sbjct: 66 REALFEVICATAEVSLAFAPPARIDGHNIRQATLWAQAKAVAGLPCTPRLVLVDGND-PP 124 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + C A+I GD + SIAAASI+AKVTRDRLM +P YGF+ H+GY T +HQQ Sbjct: 125 PIGCAVRAIIGGDGLVASIAAASIVAKVTRDRLMASLGLAHPGYGFERHMGYSTPEHQQA 184 Query: 188 IKEKGPSCIHRLTFRPLRN 206 + G HR +F P+R Sbjct: 185 LAALGACRHHRTSFAPVRE 203 >gi|171912710|ref|ZP_02928180.1| Ribonuclease H [Verrucomicrobium spinosum DSM 4136] Length = 233 Score = 164 bits (415), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 88/202 (43%), Positives = 127/202 (62%), Gaps = 3/202 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 RP F E +R++ VAG+DE GRG LAGPV VAA+IL + ++DSK+++ +R Sbjct: 27 RPTFRYEMELRQEGHQVVAGVDEAGRGPLAGPVSVAAVILPDDFTHAELHDSKQLTELRR 86 Query: 69 EELYEKITSSAIISISSASHQY--IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 E +Y+++ A + + ID+ NI +AT + AV+ L ++P + LIDG +P Sbjct: 87 ERIYDELMGRADVLWCHVMVEVDEIDRINILQATRMGMRRAVQGLSMLPHAVLIDGTPVP 146 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D P A++KGD++SLSIAAAS+IAKV RDRLMR A YP YGFD H GY T +H + Sbjct: 147 -DFPVPHRALVKGDALSLSIAAASVIAKVARDRLMRQAALDYPVYGFDQHKGYGTPEHLE 205 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 ++ GP +HR +F P+ L+ Sbjct: 206 ALRRHGPCPLHRRSFSPVSQLT 227 >gi|52424478|ref|YP_087615.1| ribonuclease HII [Mannheimia succiniciproducens MBEL55E] gi|81387520|sp|Q65VI0|RNH2_MANSM RecName: Full=Ribonuclease HII; Short=RNase HII gi|52306530|gb|AAU37030.1| RnhB protein [Mannheimia succiniciproducens MBEL55E] Length = 198 Score = 164 bits (415), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 91/183 (49%), Positives = 119/183 (65%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKRE+L E+I A+ ++ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPNNPIDGLTDSKKLSEKKREKLAEEIKQKALAWALG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID NI +AT+ A+ A++NL++ P LIDG IP+ L A AV+KGDS+ Sbjct: 73 RAEPEEIDALNILQATMLAMQRAIKNLKIQPHFVLIDGNRIPQ-LAIPAQAVVKGDSLVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKV+RD M + K+YP Y F H GYPT H + E G HR +F P+ Sbjct: 132 EISAASIIAKVSRDHEMEVLDKQYPQYEFAKHKGYPTKVHLAKLAEFGVLPQHRRSFSPV 191 Query: 205 RNL 207 R L Sbjct: 192 RKL 194 >gi|330959804|gb|EGH60064.1| putative ribonuclease HII [Pseudomonas syringae pv. maculicola str. ES4326] Length = 208 Score = 164 bits (414), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 89/183 (48%), Positives = 118/183 (64%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L G VV AA+ILDP++ G+NDSKK+S KKR+ LY +I A+ SI Sbjct: 14 VAGVDEVGRGPLCGDVVTAAVILDPSHPIQGLNDSKKLSEKKRDLLYAEICEKAVAWSIG 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A+ ID+ NI +AT+ A+ AV+ L V P L+DG P LP +A A+IKGD + Sbjct: 74 RATVDEIDQLNILQATMLAMQRAVQGLSVTPTLVLVDGNRCPS-LPMRAEAIIKGDGLIA 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AAS++AKV RDR M+ A YP YG H GYP+ H + + G + IHR TF P+ Sbjct: 133 EISAASVLAKVVRDREMQSADLLYPGYGIAGHKGYPSPVHLEALSRLGATAIHRKTFGPV 192 Query: 205 RNL 207 R + Sbjct: 193 RKI 195 >gi|325519162|gb|EGC98633.1| ribonuclease HII [Burkholderia sp. TJI49] Length = 214 Score = 164 bits (414), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 89/182 (48%), Positives = 120/182 (65%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LYE I + ++ ++ Sbjct: 28 VCGVDEAGRGPLAGPVVAAAVILDPAQPIEGLDDSKALSAKKRDALYELIIARSVSYCVA 87 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS ID NI AT+ A+ AVE L V+P A IDG P L +A A++ GD++ Sbjct: 88 SASVDEIDTLNILHATMLAMKRAVEGLAVLPTLAQIDGNRCPT-LSVRAEAIVSGDALVP 146 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI+AASI+AKVTRDR++ H+++P YGF+ H GY T KH ++E GP HR +F P+ Sbjct: 147 SISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTPKHLAALREHGPCEAHRRSFAPV 206 Query: 205 RN 206 R Sbjct: 207 RE 208 >gi|167032173|ref|YP_001667404.1| ribonuclease HII [Pseudomonas putida GB-1] gi|189043642|sp|B0KSB3|RNH2_PSEPG RecName: Full=Ribonuclease HII; Short=RNase HII gi|166858661|gb|ABY97068.1| Ribonuclease H [Pseudomonas putida GB-1] Length = 207 Score = 164 bits (414), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 90/181 (49%), Positives = 116/181 (64%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ KRE L+++I A+ I+ Sbjct: 14 VAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEAKREALFDEICEKALSFCIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI +AT+ A+ AVE L + P+ ALIDG P+ L A V+KGDS Sbjct: 74 RAEVEEIDRLNILQATMLAMQRAVEGLHITPKLALIDGNRCPK-LAVPASPVVKGDSQVP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKVTRDR M YP YG H GYPT H + + GP+ IHR +F P+ Sbjct: 133 AIAAASILAKVTRDREMSAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 192 Query: 205 R 205 R Sbjct: 193 R 193 >gi|325278078|ref|ZP_08143597.1| ribonuclease HII [Pseudomonas sp. TJI-51] gi|324096785|gb|EGB95112.1| ribonuclease HII [Pseudomonas sp. TJI-51] Length = 207 Score = 164 bits (414), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 90/181 (49%), Positives = 116/181 (64%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ KRE L+++I A+ I+ Sbjct: 14 VAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTQAKREALFDEICEKALSFCIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI +AT+ A+ AVE L V P+ ALIDG P+ L A V+KGDS Sbjct: 74 RAEVEEIDRLNILQATMLAMQRAVEGLHVTPKLALIDGNRCPK-LSVPAAPVVKGDSQVP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P+ Sbjct: 133 AIAAASILAKVSRDREMSAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 192 Query: 205 R 205 R Sbjct: 193 R 193 >gi|146344062|ref|YP_001201918.1| putative ribonuclease HII [Pseudomonas fluorescens SBW25] gi|146187874|emb|CAM96203.1| putative ribonuclease HII [Pseudomonas fluorescens SBW25] Length = 208 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 91/183 (49%), Positives = 119/183 (65%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L G VV AA+ILDP+ G+NDSKK+S KKR+ LY++I A+ SI Sbjct: 14 VAGVDEVGRGPLCGDVVTAAVILDPSRPIQGLNDSKKLSEKKRDLLYDEICEKALAWSIG 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID+ NI +AT+ A+ AV L V P LIDG P LP +A A+IKGD + Sbjct: 74 RASVEEIDQLNILQATMLAMQRAVYGLNVTPTLVLIDGNRCP-ILPMRAEAIIKGDGLIA 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AAS++AKV RDR M+ A YP YG H GYP+ +H + + G + IHR TF P+ Sbjct: 133 EISAASVLAKVVRDREMQSADLLYPGYGLAGHKGYPSPEHLEALTRLGVTPIHRKTFAPV 192 Query: 205 RNL 207 R + Sbjct: 193 RKI 195 >gi|238026917|ref|YP_002911148.1| ribonuclease HII [Burkholderia glumae BGR1] gi|237876111|gb|ACR28444.1| Ribonuclease HII [Burkholderia glumae BGR1] Length = 215 Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 92/181 (50%), Positives = 117/181 (64%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKRE LY +I A ++ Sbjct: 29 VCGVDEAGRGPLAGPVVAAAVILDPARPIVGLDDSKALSAKKRERLYAEIVERAQAYCVA 88 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS + ID NI AT+ A+ AVE L V+P A IDG P L ++ A+I GD++ Sbjct: 89 SASVEEIDTLNILHATMLAMKRAVEGLAVLPTLAQIDGNRCPT-LAIRSEAIIGGDALVP 147 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI+AASI+AKVTRDRL+ H +P YGFD H GY T KH ++E GP HR +F P+ Sbjct: 148 SISAASILAKVTRDRLLVDLHASFPLYGFDVHSGYGTPKHLAALREHGPCEHHRRSFAPV 207 Query: 205 R 205 R Sbjct: 208 R 208 >gi|144899371|emb|CAM76235.1| Ribonuclease HII [Magnetospirillum gryphiswaldense MSR-1] Length = 201 Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 94/188 (50%), Positives = 118/188 (62%), Gaps = 5/188 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYEKITSSAII 81 VAGIDEVGRG LAGPVV AAII+DP +P + +DSKK+S KKRE L I Sbjct: 14 VAGIDEVGRGPLAGPVVAAAIIIDPATLPAELAAHLDDSKKLSAKKREHLDILIRQHCRF 73 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 +I+ AS + ID+ NI KAT A+ AV+ L +P AL+DG P LPC A VI GD+ Sbjct: 74 AIAQASVEEIDRLNILKATFLAMARAVDGLGTVPDHALVDGNR-PPPLPCPAHCVIGGDA 132 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SLSIAAASIIAKV RDRLM +P YG+ ++ GY T H + +K GP+ HR +F Sbjct: 133 KSLSIAAASIIAKVFRDRLMTALDLDFPGYGWAANAGYGTKAHMEALKRLGPTPHHRTSF 192 Query: 202 RPLRNLSV 209 P+ + Sbjct: 193 APVAQFQL 200 >gi|229588817|ref|YP_002870936.1| ribonuclease HII [Pseudomonas fluorescens SBW25] gi|229360683|emb|CAY47541.1| ribonuclease HII [Pseudomonas fluorescens SBW25] Length = 206 Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 89/182 (48%), Positives = 118/182 (64%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDPN G+NDSKK++ +RE+LY++I A+ I+ Sbjct: 15 VAGVDEVGRGPLCGAVVTAAVILDPNRPILGLNDSKKLTEARREKLYDEICEKALSWHIA 74 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AVE L + P+ A+IDG P+ L + AV+KGDS Sbjct: 75 RAEVEEIDELNILHATMLAMQRAVEGLHITPKMAMIDGNRCPK-LAMPSEAVVKGDSKVP 133 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P+ Sbjct: 134 AIAAASILAKVSRDREMAAFELIYPGYGMGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 193 Query: 205 RN 206 R Sbjct: 194 RE 195 >gi|237808842|ref|YP_002893282.1| Ribonuclease H [Tolumonas auensis DSM 9187] gi|237501103|gb|ACQ93696.1| Ribonuclease H [Tolumonas auensis DSM 9187] Length = 197 Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 90/182 (49%), Positives = 116/182 (63%), Gaps = 4/182 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILDP G+NDSKK+S KKRE L++ I + + +I Sbjct: 12 IAGVDEVGRGPLIGDVVTAAVILDPARPITGLNDSKKLSEKKREALFDIIRENVLAFAIG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 S ID+ NI +AT+ A+ AV L V P LIDG P +P QA V+KGDS+ Sbjct: 72 RCSAAEIDQFNILQATMKAMQRAVAGLSVQPEFVLIDGNRCPALSMPSQA--VVKGDSLV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M + YP YGF H GYPTA+H + E G IHR +F+P Sbjct: 130 AEISAASILAKVTRDREMAELDQLYPQYGFAQHKGYPTAQHLAALAEHGALAIHRRSFKP 189 Query: 204 LR 205 ++ Sbjct: 190 VK 191 >gi|161524444|ref|YP_001579456.1| ribonuclease HII [Burkholderia multivorans ATCC 17616] gi|189350801|ref|YP_001946429.1| ribonuclease HII [Burkholderia multivorans ATCC 17616] gi|221198308|ref|ZP_03571354.1| ribonuclease HII [Burkholderia multivorans CGD2M] gi|221208247|ref|ZP_03581251.1| ribonuclease HII [Burkholderia multivorans CGD2] gi|221215471|ref|ZP_03588435.1| ribonuclease HII [Burkholderia multivorans CGD1] gi|160341873|gb|ABX14959.1| Ribonuclease H [Burkholderia multivorans ATCC 17616] gi|189334823|dbj|BAG43893.1| ribonuclease H [Burkholderia multivorans ATCC 17616] gi|221164655|gb|EED97137.1| ribonuclease HII [Burkholderia multivorans CGD1] gi|221171895|gb|EEE04338.1| ribonuclease HII [Burkholderia multivorans CGD2] gi|221182240|gb|EEE14641.1| ribonuclease HII [Burkholderia multivorans CGD2M] Length = 210 Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 90/182 (49%), Positives = 120/182 (65%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LYE I S+A ++ Sbjct: 24 VCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKVLSAKKRDALYELIVSNARAYCVA 83 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS ID NI AT+ A+ AVE L V+P A IDG P L +A A++ GD++ Sbjct: 84 SASVDEIDSLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LSVRAEAIVSGDALVP 142 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI+AASI+AKVTRDR++ H+++P YGF+ H GY T +H ++E GP HR +F P+ Sbjct: 143 SISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTPQHLAALREHGPCEAHRRSFAPV 202 Query: 205 RN 206 R Sbjct: 203 RE 204 >gi|237745609|ref|ZP_04576089.1| ribonuclease HII [Oxalobacter formigenes HOxBLS] gi|229376960|gb|EEO27051.1| ribonuclease HII [Oxalobacter formigenes HOxBLS] Length = 218 Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 86/183 (46%), Positives = 118/183 (64%), Gaps = 1/183 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 + G DE GRG +AGPV AA+ILDP+ G+ DSKK+S +R+EL +I A SI+ Sbjct: 28 ICGADEAGRGPIAGPVFAAAVILDPDRPVNGLRDSKKLSESRRDELALEIKKKAKAWSIA 87 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S ID+ NI A++ A+ A+E L V+P AL+DG P DL +A A++KGD Sbjct: 88 QCSVAEIDELNILWASMLAMKRAIETLSVLPELALVDGNRYPRDLSVRAEAIVKGDDRVP 147 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AK RD +MR H++YP YGFD H GYPTA H +K+ G S +HR T+ P+ Sbjct: 148 AISAASILAKTARDAVMRELHRQYPAYGFDRHKGYPTAFHLAQLKKYGVSPVHRRTYAPV 207 Query: 205 RNL 207 R + Sbjct: 208 RKI 210 >gi|312959406|ref|ZP_07773923.1| ribonuclease HII [Pseudomonas fluorescens WH6] gi|311286123|gb|EFQ64687.1| ribonuclease HII [Pseudomonas fluorescens WH6] Length = 210 Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 89/182 (48%), Positives = 118/182 (64%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDPN G+NDSKK++ +RE+LY++I A+ I+ Sbjct: 19 VAGVDEVGRGPLCGAVVTAAVILDPNRPILGLNDSKKLTEARREKLYDEICEKALSWHIA 78 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AVE L + P+ A+IDG P+ L + AV+KGDS Sbjct: 79 RAEVEEIDQLNILHATMLAMQRAVEGLHITPKMAMIDGNRCPK-LAMPSEAVVKGDSKVP 137 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P+ Sbjct: 138 AIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 197 Query: 205 RN 206 R Sbjct: 198 RQ 199 >gi|84515024|ref|ZP_01002387.1| ribonuclease HII [Loktanella vestfoldensis SKA53] gi|84511183|gb|EAQ07637.1| ribonuclease HII [Loktanella vestfoldensis SKA53] Length = 210 Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 88/198 (44%), Positives = 126/198 (63%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + +AG+DEVGRG LAGPVV AA++LDP +P G+NDSKK++ +RE Sbjct: 4 PDFSFEDTAHGRGHLRIAGVDEVGRGPLAGPVVAAAVVLDPARLPAGLNDSKKLTLDRRE 63 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ +I SA +SI+ AS ID HNI +A+ A+ A+ L P LIDG +P L Sbjct: 64 ALFSQIMDSADVSIAQASVAEIDSHNILRASHLAMLRAIAGLATPPDHVLIDGNMVPRGL 123 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + ++KGD+ SLSIAAASI+AKV RDR M +++P YG++++ GYPT H+ + Sbjct: 124 TLSSETIVKGDARSLSIAAASIVAKVWRDRHMVDLAQQFPGYGWEANAGYPTPAHKLALV 183 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + HR +F+P+ N+ Sbjct: 184 TLGVTPHHRRSFKPVHNI 201 >gi|254452091|ref|ZP_05065528.1| ribonuclease HII [Octadecabacter antarcticus 238] gi|198266497|gb|EDY90767.1| ribonuclease HII [Octadecabacter antarcticus 238] Length = 209 Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 91/198 (45%), Positives = 126/198 (63%), Gaps = 1/198 (0%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 P P F E + + +AG+DEVGRG LAGPV AA+ILDP NIP G+NDSK +S K Sbjct: 9 PSGPDFTFEEDLISRGAICIAGVDEVGRGPLAGPVTAAAVILDPANIPDGLNDSKMLSRK 68 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 KRE L I ++A +SI+ A+ + ID+ NI +A+ A+ A+ L + ALIDG IP Sbjct: 69 KREALEPLIFANAEVSIAHATVEEIDEINILRASHLAMERAIAGLGRVDH-ALIDGNMIP 127 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 L A +IKGD+ SLSIAAASI+AK+ RDR+M ++YP YG+D++ GY + H Sbjct: 128 RGLIIPATTIIKGDARSLSIAAASIVAKICRDRIMVGLAQQYPGYGWDTNAGYGSKSHIS 187 Query: 187 VIKEKGPSCIHRLTFRPL 204 + G + HR +F+P+ Sbjct: 188 ALHRLGVTPHHRRSFKPV 205 >gi|87118612|ref|ZP_01074511.1| ribonuclease HII [Marinomonas sp. MED121] gi|86166246|gb|EAQ67512.1| ribonuclease HII [Marinomonas sp. MED121] Length = 214 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 119/182 (65%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG VV AA+ILDPNN + DSKK+S KKR L+++I A+ I+ Sbjct: 28 AGSDEAGRGPLAGDVVAAAVILDPNNPIASLADSKKLSEKKRVALFDEIKEKALAFCIAR 87 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS ID+ NI A++ A+ A+ L+V P ALIDG IP+DLPC A AV+KGD + Sbjct: 88 ASVAEIDELNILHASMLAMQRAISGLRVTPEHALIDGNRIPKDLPCPAEAVVKGDDRVEA 147 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AKV RD + ++YP YG + H GYPTA+H ++ G + IHR +F P++ Sbjct: 148 ISAASILAKVERDNEISALAERYPGYGLEKHKGYPTAQHLAALETLGVTPIHRQSFGPVK 207 Query: 206 NL 207 + Sbjct: 208 RI 209 >gi|94500636|ref|ZP_01307166.1| ribonuclease HII [Oceanobacter sp. RED65] gi|94427191|gb|EAT12171.1| ribonuclease HII [Oceanobacter sp. RED65] Length = 222 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/207 (42%), Positives = 128/207 (61%), Gaps = 8/207 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 ++ F+LE +++ + G+DE G G L G VV AA+ILDPNN +NDSKK+S KK Sbjct: 9 QQAWFQLEQSLKQSGIL-YCGVDEAGAGPLCGDVVAAAVILDPNNPIDSLNDSKKLSEKK 67 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALI 120 RE L+ +I A+ I+ + Q ID+ NI +A + A+ AV+ L+ +P A I Sbjct: 68 REALFPEIKEKALAYCIARCTPQEIDEINILQARMLAMTRAVKGLRDQNGEICLPEHAFI 127 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG +P+ LPCQA V+KGD++ +I+AAS++AKV RD M K YP Y H GYP Sbjct: 128 DGNRLPQGLPCQATPVVKGDALVAAISAASVLAKVQRDHDMVELDKHYPGYELAKHKGYP 187 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNL 207 T H Q++KE GP+ I+R +F P++ L Sbjct: 188 TKAHLQLLKENGPTDIYRKSFGPVKAL 214 >gi|254440277|ref|ZP_05053771.1| ribonuclease HII [Octadecabacter antarcticus 307] gi|198255723|gb|EDY80037.1| ribonuclease HII [Octadecabacter antarcticus 307] Length = 206 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 92/201 (45%), Positives = 129/201 (64%), Gaps = 3/201 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + + + +AG+DEVGRG LAGPV AA+ILDP NIP G+NDSK +S KKRE Sbjct: 5 PDFTFEQDLFARGILRIAGVDEVGRGPLAGPVTAAAVILDPANIPDGLNDSKALSRKKRE 64 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQV-IPR--SALIDGRSIP 126 L I +SA +SI+ A+ + ID+ NI +A+ A+ A+ L + R ALIDG +P Sbjct: 65 LLEPLIFASAEVSIAHATVEEIDEINILRASHLAMERAIAGLGAGLNRVDHALIDGNMVP 124 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 L A +IKGD+ SLSIAAASI+AK+ RDR+M + YP YG+D++ GY + H Sbjct: 125 RGLIIPATTIIKGDARSLSIAAASIVAKICRDRIMVELAQHYPGYGWDTNAGYGSKSHIS 184 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 ++ G + HR +F+P+ N+ Sbjct: 185 ALQNIGVTPHHRRSFKPVHNM 205 >gi|254485800|ref|ZP_05099005.1| ribonuclease HII [Roseobacter sp. GAI101] gi|214042669|gb|EEB83307.1| ribonuclease HII [Roseobacter sp. GAI101] Length = 205 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 84/198 (42%), Positives = 130/198 (65%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P FE E + VAG+DEVGRG LAGPV AA++LDP IP G+NDSKK++ + RE Sbjct: 3 PDFEFERDAYARGFARVAGVDEVGRGPLAGPVTAAAVVLDPARIPEGLNDSKKLTKRARE 62 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY++I + A +SI+ AS + I++ NI +A+ A+ A++ L+ ALIDG +P DL Sbjct: 63 RLYDEIMAVADVSIAHASVEEIEELNILRASHLAMVRALDGLRTPADFALIDGNMVPRDL 122 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++ VIKGD+ S SI+AASI+AK+ RD +M +++P YG+++++GY + H + ++ Sbjct: 123 AIKSQTVIKGDARSQSISAASIMAKICRDCVMLSLAQQHPGYGWETNMGYGSKSHIEALQ 182 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + HR F+P+ + Sbjct: 183 NLGVTPHHRRLFKPVHKM 200 >gi|330722242|gb|EGH00125.1| Ribonuclease HII [gamma proteobacterium IMCC2047] Length = 203 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 92/183 (50%), Positives = 118/183 (64%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG LAGPVV AA+IL+P N G+ DSKK++ K+RE L+ I A+ I+ Sbjct: 12 VAGVDEVGRGPLAGPVVAAAVILNPANPIEGLADSKKLTEKRREALFPLIQERALAWCIA 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID+ NI A+L A+ AV L P L+DG P DLP + A+IKGDS Sbjct: 72 RASEAEIDRLNILHASLLAMRRAVLGLSQQPDRVLVDGNRCP-DLPYPSEAIIKGDSKIE 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKV RD M + YP YGF H GYPTA+H Q +K G + IHR +F P+ Sbjct: 131 AISAASILAKVVRDNEMVAFEETYPGYGFAKHKGYPTAQHMQALKTLGVTPIHRRSFAPV 190 Query: 205 RNL 207 +NL Sbjct: 191 KNL 193 >gi|289167905|ref|YP_003446174.1| ribonuclease HII [Streptococcus mitis B6] gi|288907472|emb|CBJ22309.1| ribonuclease HII [Streptococcus mitis B6] Length = 259 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 93/203 (45%), Positives = 132/203 (65%), Gaps = 9/203 (4%) Query: 12 FELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 F LE+M+ EK ++ VAG+DEVGRG LAGPVV AA+IL N G+NDSKKI Sbjct: 52 FRLESMLSYEKELYKQGLTLVAGVDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPK 111 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KK E+++ + + A+ I I +Q ID+ NI++AT A+ A+ L P LID Sbjct: 112 KKHLEIFQAVQNQALSIGIGIMDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMK 171 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + DLP ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH Sbjct: 172 L--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEFDQQFPGYDFATNAGYGTAKH 229 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 + +++ G + IHR +F P+++L Sbjct: 230 LEGLEKLGVTPIHRTSFEPVKSL 252 >gi|330817425|ref|YP_004361130.1| Ribonuclease HII [Burkholderia gladioli BSR3] gi|327369818|gb|AEA61174.1| Ribonuclease HII [Burkholderia gladioli BSR3] Length = 217 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 91/182 (50%), Positives = 118/182 (64%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS-SAIISIS 84 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKRE LY +I + S ++ Sbjct: 31 VCGVDEAGRGPLAGPVVAAAVILDPARPILGLDDSKALSAKKRELLYHEIVAHSRAWCVA 90 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS + ID NI AT+ A+ AVE L ++P A IDG P L ++ A++ GD++ Sbjct: 91 SASVEEIDTLNILHATMLAMRRAVEGLSLLPTLAKIDGNRCPT-LGIRSEAIVGGDALVP 149 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI+AASIIAKVTRDRL+ H +P YGFD H GY T KH ++E GP HR +F P+ Sbjct: 150 SISAASIIAKVTRDRLLVDLHATFPHYGFDVHAGYGTPKHLAALREHGPCEHHRRSFAPV 209 Query: 205 RN 206 R Sbjct: 210 RE 211 >gi|163750365|ref|ZP_02157605.1| ribonuclease HII [Shewanella benthica KT99] gi|161329855|gb|EDQ00841.1| ribonuclease HII [Shewanella benthica KT99] Length = 218 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 86/188 (45%), Positives = 120/188 (63%), Gaps = 8/188 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DEVGRG L G VV AA+ILDP N G+NDSKK++ KKRE L+ +I A+ IS+ Sbjct: 21 AGVDEVGRGPLVGNVVTAAVILDPKNPILGLNDSKKLTEKKREALFTEIHEKALSISVGH 80 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-------EDLPCQAFAVIK 138 A+ + ID+ NI AT+ A+ AV L++ P L+DG P +L +A A++K Sbjct: 81 ATPEEIDELNILHATMLAMQRAVAGLEIKPVKVLVDGNRAPIFHHGDNTELALEAHAIVK 140 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD + I+AASI+AKV RDR M++ ++P YGF H GYPT H Q +++ G HR Sbjct: 141 GDGLIAGISAASIVAKVIRDREMKLLDMEHPQYGFAKHKGYPTQAHFQALEQHGVLAEHR 200 Query: 199 LTFRPLRN 206 +FRP+R+ Sbjct: 201 KSFRPVRD 208 >gi|134296014|ref|YP_001119749.1| ribonuclease HII [Burkholderia vietnamiensis G4] gi|166225178|sp|A4JF61|RNH2_BURVG RecName: Full=Ribonuclease HII; Short=RNase HII gi|134139171|gb|ABO54914.1| Ribonuclease H [Burkholderia vietnamiensis G4] Length = 216 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 90/181 (49%), Positives = 119/181 (65%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS-SAIISIS 84 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LY+ I + S ++ Sbjct: 30 VCGVDEAGRGPLAGPVVAAAVILDPAQPIEGLDDSKALSAKKRDALYDLIVARSRAYCVA 89 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS ID NI AT+ A+ AVE L ++P A IDG P L +A A++ GD++ Sbjct: 90 SASVDEIDTLNILHATMLAMKRAVEGLSLMPTLAQIDGNRCPT-LMVRAEAIVSGDALVP 148 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI+AASI+AKVTRDR++ H ++P YGFD H GY TAKH ++E GP HR +F P+ Sbjct: 149 SISAASILAKVTRDRMLVELHARHPVYGFDVHAGYGTAKHLAALREHGPCEAHRRSFAPV 208 Query: 205 R 205 R Sbjct: 209 R 209 >gi|294648443|ref|ZP_06725932.1| ribonuclease HII [Acinetobacter haemolyticus ATCC 19194] gi|292825668|gb|EFF84382.1| ribonuclease HII [Acinetobacter haemolyticus ATCC 19194] Length = 200 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 90/192 (46%), Positives = 124/192 (64%), Gaps = 6/192 (3%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 +V NM +AG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I Sbjct: 7 LVERCNM-TIAGVDEAGRGPLVGSVVAAAVILDPNNPIEGLNDSKKLTEKKREKLFAEIQ 65 Query: 77 SSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQA 133 A+ SI+ ASH ID+ NI +AT A+ AVE L P ++DG IP+ ++PC+A Sbjct: 66 EKALAWSIAEASHVEIDEFNILQATFLAMRRAVEALATQPAKVIVDGNQIPKGINIPCEA 125 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++ GD+ I+AASI+AKVTRDR M+ +YP+YGF H GYPT H + I G Sbjct: 126 --IVGGDATHAEISAASILAKVTRDRQMKALDLEYPNYGFAKHKGYPTKAHFEAIAIHGV 183 Query: 194 SCIHRLTFRPLR 205 HR ++ P++ Sbjct: 184 IDEHRRSYGPVK 195 >gi|322385535|ref|ZP_08059179.1| ribonuclease HII [Streptococcus cristatus ATCC 51100] gi|321270273|gb|EFX53189.1| ribonuclease HII [Streptococcus cristatus ATCC 51100] Length = 254 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 94/203 (46%), Positives = 129/203 (63%), Gaps = 9/203 (4%) Query: 12 FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 LE M+R EK ++ +AGIDEVGRG LAGPVV AA+IL PN G+NDSKKI Sbjct: 52 LRLEYMLRYEKELYSQGFQALAGIDEVGRGPLAGPVVAAAVILPPNCKIKGLNDSKKIPK 111 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KK EE+Y+ + A+ + + +Q ID+ NI++AT A+ AV L++ P LID Sbjct: 112 KKHEEIYQAVLDHALAVGLGIMDNQTIDRVNIYEATKLAMLEAVAQLKIKPDYLLIDAMK 171 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + LP Q+ +IKGD+ SLSIAAASI+AKVTRD++M + YP Y F + GY T H Sbjct: 172 LDLSLPQQS--IIKGDANSLSIAAASIVAKVTRDKMMADFDQIYPGYDFAQNAGYGTKSH 229 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 Q ++ G + IHR TF P++++ Sbjct: 230 LQGLERNGVTPIHRKTFEPVKSM 252 >gi|307729345|ref|YP_003906569.1| Ribonuclease H [Burkholderia sp. CCGE1003] gi|307583880|gb|ADN57278.1| Ribonuclease H [Burkholderia sp. CCGE1003] Length = 271 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/183 (48%), Positives = 121/183 (66%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAII-SI 83 V G+DE GRG LAGPVV AA+I DP+ + G++DSK ++ KKR+ELYEKI A+ I Sbjct: 46 VCGVDEAGRGPLAGPVVAAAVIFDPSKPMIRGLDDSKALTAKKRDELYEKIVDRALAYCI 105 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SA+ + ID NI AT+ A+ AVE L V P +DG P L ++ AVI GD++ Sbjct: 106 ASATVEEIDSLNILHATMLAMKRAVEGLSVTPTLVKVDGNRCPT-LSVRSEAVIGGDALV 164 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+ YP YGF++H GY T +H ++E GP HR +F P Sbjct: 165 KSISAASILAKVTRDRMLLELHQTYPMYGFNAHAGYGTPQHLAALREHGPCEHHRRSFAP 224 Query: 204 LRN 206 +R Sbjct: 225 VRE 227 >gi|89075406|ref|ZP_01161823.1| ribonuclease HII [Photobacterium sp. SKA34] gi|89048822|gb|EAR54392.1| ribonuclease HII [Photobacterium sp. SKA34] Length = 203 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 88/183 (48%), Positives = 117/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK++ KKR L+++I A+ S+ Sbjct: 18 IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTEKKRNLLFDEIKEKALSWSLG 77 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 IDK NI +AT+ A+ AV L + P LIDG +PE LP A AV+KGD Sbjct: 78 RCEADEIDKLNILQATMVAMQRAVAGLSLQPDYVLIDGNKVPE-LPMAAQAVVKGDLRVA 136 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKVTRDR M I ++P YGF H GYPT H + +++ G HR +F+P+ Sbjct: 137 EISAASIIAKVTRDREMEILGAEFPQYGFAKHKGYPTKAHFEALEQYGAIEQHRKSFKPV 196 Query: 205 RNL 207 + + Sbjct: 197 KRV 199 >gi|70728572|ref|YP_258321.1| ribonuclease HII [Pseudomonas fluorescens Pf-5] gi|97189183|sp|Q4KHG2|RNH2_PSEF5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|68342871|gb|AAY90477.1| ribonuclease HII [Pseudomonas fluorescens Pf-5] Length = 217 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/182 (48%), Positives = 117/182 (64%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+L+++I A+ I+ Sbjct: 24 VAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKLFDEICEKALSWCIA 83 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AVE L V P+ A+IDG P+ L A AV+KGDS Sbjct: 84 RAEVEEIDELNILHATMLAMQRAVEGLSVTPKLAMIDGNRCPK-LAMPAEAVVKGDSKVP 142 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P+ Sbjct: 143 AIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 202 Query: 205 RN 206 R Sbjct: 203 RQ 204 >gi|226327034|ref|ZP_03802552.1| hypothetical protein PROPEN_00895 [Proteus penneri ATCC 35198] gi|225204252|gb|EEG86606.1| hypothetical protein PROPEN_00895 [Proteus penneri ATCC 35198] Length = 196 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/181 (49%), Positives = 115/181 (63%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK++ KKR LY++I A+ +I Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPANPIEGLTDSKKLTEKKRNALYDEIKEKALCWAIG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L + P LIDG P+ LP + AVIKGDS+ Sbjct: 71 RAEPEEIDELNILWATMKAMERAVAGLSITPDMVLIDGNRCPK-LPMASQAVIKGDSLVQ 129 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M K YPDYGF H GYPT H + + G + HR +F P+ Sbjct: 130 EISAASILAKVTRDREMEELDKLYPDYGFAKHKGYPTVFHMEKLALLGATPYHRKSFAPV 189 Query: 205 R 205 + Sbjct: 190 K 190 >gi|54310070|ref|YP_131090.1| ribonuclease HII [Photobacterium profundum SS9] gi|73917828|sp|Q6LN38|RNH2_PHOPR RecName: Full=Ribonuclease HII; Short=RNase HII gi|46914509|emb|CAG21288.1| putative ribonuclease HII [Photobacterium profundum SS9] Length = 201 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 88/183 (48%), Positives = 118/183 (64%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L+++I A+ S+ Sbjct: 16 IAGVDEVGRGPLVGAVVTAAVILDPNNPIVGLTDSKKLSEKKRNVLFDEIKEKAVAWSLG 75 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + ID+ NI +AT+ A+ AV +L V P LIDG IP+ LP A AV+KGD Sbjct: 76 RCEPEEIDELNILQATMVAMQRAVADLSVQPDFVLIDGNKIPQ-LPMAAQAVVKGDLRVA 134 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKVTRDR M + ++P YGF H GYPT H + ++ G HR +F+P+ Sbjct: 135 EISAASIIAKVTRDREMEVLDAQFPQYGFAKHKGYPTKVHVEALELHGAIEQHRKSFKPV 194 Query: 205 RNL 207 + + Sbjct: 195 KRI 197 >gi|290473671|ref|YP_003466543.1| RNAse HII [Xenorhabdus bovienii SS-2004] gi|289172976|emb|CBJ79747.1| RNAse HII [Xenorhabdus bovienii SS-2004] Length = 196 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 90/181 (49%), Positives = 116/181 (64%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSKK++ K+RE LY +I A+ S+ Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPAKPITGLMDSKKLTEKRREALYLEIKEKALCWSLG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AVE L + P LIDG P LP A AVIKGDS+ Sbjct: 71 RAEPEEIDQLNILHATMLAMQRAVEGLAITPDYVLIDGNRCPA-LPMSALAVIKGDSLVA 129 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M K++PDYGF H GYPTA H + + G + HR +F P+ Sbjct: 130 EISAASILAKVTRDREMAELGKQFPDYGFAQHKGYPTALHLEKLALLGATEHHRKSFAPV 189 Query: 205 R 205 + Sbjct: 190 K 190 >gi|257439821|ref|ZP_05615576.1| ribonuclease HII [Faecalibacterium prausnitzii A2-165] gi|257197730|gb|EEU96014.1| ribonuclease HII [Faecalibacterium prausnitzii A2-165] Length = 214 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 86/193 (44%), Positives = 118/193 (61%), Gaps = 2/193 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P +E +A +R + + AG+DE GRG L GPVVVAA ILDP +GINDSKK++ KKRE Sbjct: 12 PLYEYDAAIRAQYGF-FAGVDEAGRGPLCGPVVVAACILDPEKPVYGINDSKKLTEKKRE 70 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L+++I A+ I + ID+ NI AT+ + A E L ++P L+DG +P Sbjct: 71 ALFDEICDKALAYKIVFVGPEIIDRDNILNATMSGMKQAAEGLDIVPNLVLVDGNRVPAA 130 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L A V+KGD+ S SI AASI+AKV+RDR M K+YP Y H GYPT H ++I Sbjct: 131 LEIPAQPVVKGDATSASIGAASILAKVSRDRYMMELDKQYPQYQLAKHKGYPTKLHYELI 190 Query: 189 KEKGPSCIHRLTF 201 ++ G +R +F Sbjct: 191 EQYGIQPFYRRSF 203 >gi|229524248|ref|ZP_04413653.1| ribonuclease HII [Vibrio cholerae bv. albensis VL426] gi|229337829|gb|EEO02846.1| ribonuclease HII [Vibrio cholerae bv. albensis VL426] Length = 206 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 95/199 (47%), Positives = 123/199 (61%), Gaps = 7/199 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE+ A +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S KK Sbjct: 8 ELPPFEIPA-----GYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSEKK 62 Query: 68 REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L+ +I A+ S+ S Q ID+ NI +AT+ A+ AV L++ P LIDG IP Sbjct: 63 RLALFPEIQEKALAWSVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNKIP 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + LP +A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 123 K-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAHFA 181 Query: 187 VIKEKGPSCIHRLTFRPLR 205 I++ G HR +F P++ Sbjct: 182 AIEQHGVIEQHRKSFGPVK 200 >gi|313123917|ref|YP_004034176.1| ribonuclease hii [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280480|gb|ADQ61199.1| Ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 256 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 90/193 (46%), Positives = 122/193 (63%), Gaps = 7/193 (3%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 EK+ W VAG+DEVGRG LAGPVV AA+IL + +NDSKK+S +KR LY KI Sbjct: 59 EKDFWAKGQLVAGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLTLYPKI 118 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A+ + + ++ ID+ NI++A A+ AVE L P + L+D ++P DLP Sbjct: 119 LQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSTRPDALLVDAMNVPVDLP--QL 176 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +IKGD+ S SIAAASI+AKV RD LM + YPDY FD + GY T H + +++ GP+ Sbjct: 177 ELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALRKYGPT 236 Query: 195 CIHRLTFRPLRNL 207 IHRLTF P+ + Sbjct: 237 PIHRLTFSPVSEM 249 >gi|256823113|ref|YP_003147076.1| Ribonuclease H [Kangiella koreensis DSM 16069] gi|256796652|gb|ACV27308.1| Ribonuclease H [Kangiella koreensis DSM 16069] Length = 191 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 90/183 (49%), Positives = 121/183 (66%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG LAGPVV AA+ILDP N G+ DSKK++ K+RE L +I A+ SI+ Sbjct: 7 IAGVDEVGRGPLAGPVVAAAVILDPANPIVGLADSKKLTEKRREALSIEIKEKALAWSIA 66 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI +A+L A+ AVE L P ALIDG PE L C+ A+IKGDS Sbjct: 67 RAEVEEIDRINILQASLLAMKRAVETLSHSPELALIDGNHCPE-LDCRMEAIIKGDSKEP 125 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKV RD M + YP YGF H GYPT +H++ I + G + IHR ++ P+ Sbjct: 126 AISAASILAKVARDTEMVEMEQTYPGYGFAKHKGYPTQQHREAIMQLGITPIHRRSYAPV 185 Query: 205 RNL 207 + + Sbjct: 186 QRM 188 >gi|300812547|ref|ZP_07092964.1| ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496420|gb|EFK31525.1| ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 256 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 90/193 (46%), Positives = 122/193 (63%), Gaps = 7/193 (3%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 EK+ W VAG+DEVGRG LAGPVV AA+IL + +NDSKK+S +KR LY KI Sbjct: 59 EKDFWAKGQLVAGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLALYPKI 118 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A+ + + ++ ID+ NI++A A+ AVE L P + L+D ++P DLP Sbjct: 119 LQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSTRPDALLVDAMNVPVDLP--QL 176 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +IKGD+ S SIAAASI+AKV RD LM + YPDY FD + GY T H + +++ GP+ Sbjct: 177 ELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALRKYGPT 236 Query: 195 CIHRLTFRPLRNL 207 IHRLTF P+ + Sbjct: 237 PIHRLTFSPVSEM 249 >gi|148549378|ref|YP_001269480.1| ribonuclease HII [Pseudomonas putida F1] gi|166226641|sp|A5W836|RNH2_PSEP1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|148513436|gb|ABQ80296.1| RNase HII [Pseudomonas putida F1] Length = 207 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 89/181 (49%), Positives = 115/181 (63%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE L+++I A+ I+ Sbjct: 14 VAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREALFDEICEKALSFCIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID NI +AT+ A+ AVE L + P+ ALIDG P+ L A V+KGDS Sbjct: 74 RAEVEEIDSLNILQATMLAMQRAVEGLHITPKLALIDGNRCPK-LAVPAAPVVKGDSQVP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKVTRDR M YP YG H GYPT H + + GP+ IHR +F P+ Sbjct: 133 AIAAASILAKVTRDREMSAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 192 Query: 205 R 205 R Sbjct: 193 R 193 >gi|26988337|ref|NP_743762.1| ribonuclease HII [Pseudomonas putida KT2440] gi|37999636|sp|Q88MG6|RNH2_PSEPK RecName: Full=Ribonuclease HII; Short=RNase HII gi|24983086|gb|AAN67226.1|AE016349_7 ribonuclease HII [Pseudomonas putida KT2440] gi|313500227|gb|ADR61593.1| RnhB [Pseudomonas putida BIRD-1] Length = 207 Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 89/181 (49%), Positives = 115/181 (63%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE L+++I A+ I+ Sbjct: 14 VAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREALFDEICEKALSFCIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID NI +AT+ A+ AVE L + P+ ALIDG P+ L A V+KGDS Sbjct: 74 RAEVEEIDSLNILQATMLAMQRAVEGLHITPKLALIDGNRCPK-LAVPAAPVVKGDSQVP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKVTRDR M YP YG H GYPT H + + GP+ IHR +F P+ Sbjct: 133 AIAAASILAKVTRDREMSAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 192 Query: 205 R 205 R Sbjct: 193 R 193 >gi|206560439|ref|YP_002231203.1| ribonuclease HII [Burkholderia cenocepacia J2315] gi|238693107|sp|B4ECL7|RNH2_BURCJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|198036480|emb|CAR52377.1| ribonuclease HII [Burkholderia cenocepacia J2315] Length = 214 Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 90/181 (49%), Positives = 120/181 (66%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS-SAIISIS 84 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LY+ I + S ++ Sbjct: 28 VCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKVLSAKKRDLLYDLIVARSHAYCVA 87 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS ID NI AT+ A+ AVE L V+P A IDG P L +A A++ GD++ Sbjct: 88 SASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LSVRAEAIVSGDALVP 146 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI+AASI+AKVTRDR++ H+++P YGF+ H GY TAKH ++E GP HR +F P+ Sbjct: 147 SISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAHRRSFAPV 206 Query: 205 R 205 R Sbjct: 207 R 207 >gi|330504230|ref|YP_004381099.1| ribonuclease HII [Pseudomonas mendocina NK-01] gi|328918516|gb|AEB59347.1| ribonuclease HII [Pseudomonas mendocina NK-01] Length = 208 Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 90/183 (49%), Positives = 118/183 (64%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE L+++I A+ I+ Sbjct: 14 VAGVDEVGRGPLCGAVVTAAVILDPARPIIGLNDSKKLTEARRELLFDEIREKALAWCIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AVE L V PR ALIDG P+ L + V+KGDS Sbjct: 74 RAEVEEIDRLNILHATMLAMQRAVEGLSVTPRLALIDGNRCPK-LAVPSAPVVKGDSRVP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV+RDR M + YP YG H GYPT H + ++ GP+ IHR +F P+ Sbjct: 133 AIAAASILAKVSRDREMVEMDRLYPGYGIAGHKGYPTPVHLEALQRLGPTPIHRRSFAPV 192 Query: 205 RNL 207 R L Sbjct: 193 RAL 195 >gi|322418210|ref|YP_004197433.1| Ribonuclease H [Geobacter sp. M18] gi|320124597|gb|ADW12157.1| Ribonuclease H [Geobacter sp. M18] Length = 228 Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 125/206 (60%), Gaps = 7/206 (3%) Query: 6 IPERPHFE---LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62 P+ P + LE + +AG+DE GRG LAGPVV AA+I+ + G+NDSK+ Sbjct: 5 FPDNPPLDMLALEGQALRRGYCRIAGVDEAGRGPLAGPVVAAAVIIPTGVLLPGVNDSKQ 64 Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 ++ +KREEL++ I A+ + + H +D NI +ATL A+ AV L V P LID Sbjct: 65 LTEEKREELFDLIYREAVAVGVGIGDHALVDSINILQATLRAMSDAVRALSVAPDFILID 124 Query: 122 G-RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 G SIP ++P + V KGDS+SLSIAAASIIAKVTRDR+M + ++ YGF SH GY Sbjct: 125 GISSIPMNIPQRT--VKKGDSLSLSIAAASIIAKVTRDRMMVVYDTQFSGYGFASHKGYG 182 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206 A H I E GP IHR +F ++ Sbjct: 183 AASHLAAIAELGPCPIHRKSFSGVKE 208 >gi|90413543|ref|ZP_01221534.1| ribonuclease HII [Photobacterium profundum 3TCK] gi|90325475|gb|EAS41958.1| ribonuclease HII [Photobacterium profundum 3TCK] Length = 201 Score = 162 bits (409), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 87/183 (47%), Positives = 118/183 (64%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L+++I A+ S+ Sbjct: 16 IAGVDEVGRGPLVGAVVTAAVILDPNNPIVGLTDSKKLSEKKRNVLFDEIKEKALAWSLG 75 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + ID+ NI +AT+ A+ AV +L + P LIDG IP+ LP A AV+KGD Sbjct: 76 RCEPEEIDELNILQATMVAMQRAVADLNIQPDFVLIDGNKIPQ-LPMAAQAVVKGDLRVA 134 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKVTRDR M + ++P YGF H GYPT H + ++ G HR +F+P+ Sbjct: 135 EISAASIIAKVTRDREMEVLDAQFPQYGFAKHKGYPTKAHFEALELHGAIEQHRKSFKPV 194 Query: 205 RNL 207 + + Sbjct: 195 KRI 197 >gi|90580985|ref|ZP_01236786.1| ribonuclease HII [Vibrio angustum S14] gi|90437863|gb|EAS63053.1| ribonuclease HII [Vibrio angustum S14] Length = 203 Score = 162 bits (409), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 88/183 (48%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK++ KKR L+++I A+ S+ Sbjct: 18 IAGVDEVGRGPLVGAVVTAAVILDPNNPIKGLTDSKKLTEKKRNLLFDEIKEKALSWSLG 77 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 ID NI +AT+ A+ AV L V P LIDG +PE LP A AV+KGD Sbjct: 78 RCEADEIDNLNILQATMVAMQRAVAGLSVQPDYVLIDGNKVPE-LPMAAQAVVKGDLRVA 136 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKVTRDR M I ++P YGF H GYPT H + +++ G HR +F+P+ Sbjct: 137 EISAASIIAKVTRDREMEILDAEFPQYGFAKHKGYPTKAHFEALEQYGAIEQHRKSFKPV 196 Query: 205 RNL 207 + + Sbjct: 197 KRV 199 >gi|104783181|ref|YP_609679.1| ribonuclease HII [Pseudomonas entomophila L48] gi|122402183|sp|Q1I640|RNH2_PSEE4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|95112168|emb|CAK16895.1| ribonuclease HII [Pseudomonas entomophila L48] Length = 207 Score = 162 bits (409), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 89/181 (49%), Positives = 116/181 (64%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ KR+ L+++I A+ I+ Sbjct: 14 VAGVDEVGRGPLCGAVVTAAVILDPRRPILGLNDSKKLTEAKRDALFDEIREKALSFCIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI +AT+ A+ AVE L + P+ ALIDG P+ L A V+KGDS Sbjct: 74 RAEVEEIDRLNILQATMLAMQRAVEGLHITPKLALIDGNRCPK-LAVPAAPVVKGDSQVP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKVTRDR M YP YG H GYPT H + + GP+ IHR +F P+ Sbjct: 133 AIAAASILAKVTRDREMSEFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 192 Query: 205 R 205 R Sbjct: 193 R 193 >gi|323526474|ref|YP_004228627.1| Ribonuclease H [Burkholderia sp. CCGE1001] gi|323383476|gb|ADX55567.1| Ribonuclease H [Burkholderia sp. CCGE1001] Length = 253 Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 89/183 (48%), Positives = 121/183 (66%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAII-SI 83 V G+DE GRG LAGPVV AA+I DP+ + G++DSK ++ KKR+ELYEKI A+ I Sbjct: 26 VCGVDEAGRGPLAGPVVAAAVIFDPSKPMIRGLDDSKALTAKKRDELYEKIVDRALAYCI 85 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SA+ + ID NI AT+ A+ AVE L V P +DG P L ++ AVI GD++ Sbjct: 86 ASATVEEIDSLNILHATMLAMKRAVEGLAVTPTLVKVDGNRCPM-LSIRSEAVIGGDALV 144 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+ YP YGF++H GY T +H ++E GP HR +F P Sbjct: 145 KSISAASILAKVTRDRMLLELHQTYPMYGFNAHAGYGTPQHLAALREHGPCEHHRRSFAP 204 Query: 204 LRN 206 +R Sbjct: 205 VRE 207 >gi|209518722|ref|ZP_03267538.1| Ribonuclease H [Burkholderia sp. H160] gi|209500836|gb|EEA00876.1| Ribonuclease H [Burkholderia sp. H160] Length = 249 Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 90/183 (49%), Positives = 119/183 (65%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAII-SI 83 V G+DE GRG LAGPVV AA+I DP + G++DSK +S KRE LY+KI A+ I Sbjct: 32 VCGVDEAGRGPLAGPVVAAAVIFDPAKPMIRGLDDSKALSANKREALYDKIVERALAYCI 91 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS + ID NI AT+ A+ AVE L V+P +DG P L ++ AVI GD++ Sbjct: 92 ASASVEEIDSLNILHATMLAMKRAVEGLSVVPTLVKVDGNRCPT-LSIRSEAVIGGDALV 150 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+ YP YGFD+H GY T +H ++E GP HR +F P Sbjct: 151 KSISAASILAKVTRDRMLVELHQAYPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAP 210 Query: 204 LRN 206 +R Sbjct: 211 VRE 213 >gi|330975385|gb|EGH75451.1| ribonuclease HII [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 217 Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 90/181 (49%), Positives = 115/181 (63%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ KRE+LY +I A+ I+ Sbjct: 14 VAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEAKREKLYVEIQEKALCWFIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AVE L + PR ALIDG P+ L + V+KGDS Sbjct: 74 RAEVEEIDQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQ-LSVPSAPVVKGDSKVP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P+ Sbjct: 133 AIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 192 Query: 205 R 205 R Sbjct: 193 R 193 >gi|325125945|gb|ADY85275.1| Ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 256 Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 89/193 (46%), Positives = 122/193 (63%), Gaps = 7/193 (3%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 EK+ W V G+DEVGRG LAGPVV AA+IL + +NDSKK+S +KR LY KI Sbjct: 59 EKDFWAKGQLVGGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLALYPKI 118 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A+ + + ++ ID+ NI++A A+ AVE L + P + L+D ++P DLP Sbjct: 119 LQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSIRPDALLVDAMNVPVDLP--QL 176 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +IKGD+ S SIAAASI+AKV RD LM + YPDY FD + GY T H + +++ GP+ Sbjct: 177 ELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALRKYGPT 236 Query: 195 CIHRLTFRPLRNL 207 IHRLTF P+ + Sbjct: 237 PIHRLTFSPVSEM 249 >gi|225180946|ref|ZP_03734394.1| Ribonuclease H [Dethiobacter alkaliphilus AHT 1] gi|225168427|gb|EEG77230.1| Ribonuclease H [Dethiobacter alkaliphilus AHT 1] Length = 260 Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 97/191 (50%), Positives = 121/191 (63%), Gaps = 2/191 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +LE REK +AG+DE GRG LAGPVV A+IL N G+NDSKK++ +KREEL Sbjct: 64 LKLERAAREKGFTYIAGVDEAGRGPLAGPVVAGAVILPDNFFLAGLNDSKKLTPQKREEL 123 Query: 72 YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YE ITS A+ S+ ID NI +A+ A+Y A+ L V P AL+D E+LP Sbjct: 124 YEAITSEAVAWSVGIGEVWEIDDINILQASKLAMYRALLTLSVKPDYALLD-ALELEELP 182 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 V+ GD +SLSIAAAS++AKVTRDRLM K YP YGF H GYPTA+H+ I + Sbjct: 183 FAQQGVVGGDGLSLSIAAASVVAKVTRDRLMCEQEKMYPGYGFSLHKGYPTAEHRSAIAK 242 Query: 191 KGPSCIHRLTF 201 GP IHR +F Sbjct: 243 LGPCPIHRKSF 253 >gi|149183639|ref|ZP_01862056.1| ribonuclease HII [Bacillus sp. SG-1] gi|148848656|gb|EDL62889.1| ribonuclease HII [Bacillus sp. SG-1] Length = 258 Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 91/195 (46%), Positives = 123/195 (63%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +R++ +AGIDEVGRG LAGPVV AA+IL + GINDSKK+S K+RE Y+ Sbjct: 63 FENELRDQGFELIAGIDEVGRGPLAGPVVAAAVILPADFCLLGINDSKKLSEKQREAFYQ 122 Query: 74 KITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 IT AI S S Q ID+ NI++A+ A+ A+ L V P LID + P Sbjct: 123 YITEEAIAWSTGIISPQEIDELNIYQASKKAMVTALNTLNVKPDHLLIDAMELGSPYP-- 180 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SIAAASI+AKVTRDR+M + Y YG + ++GY T +H + + E G Sbjct: 181 EMSLIKGDARSISIAAASIVAKVTRDRMMEEYSQVYSGYGLEKNMGYGTKEHLEGLNEFG 240 Query: 193 PSCIHRLTFRPLRNL 207 PS IHR +F P++ L Sbjct: 241 PSPIHRKSFAPVKEL 255 >gi|325686018|gb|EGD28077.1| ribonuclease HII [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 256 Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 90/193 (46%), Positives = 122/193 (63%), Gaps = 7/193 (3%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 EK+ W VAG+DEVGRG LAGPVV AA+IL + +NDSKK+S +KR LY KI Sbjct: 59 EKDFWAKGQLVAGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLVLYPKI 118 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A+ + + ++ ID+ NI++A A+ AVE L P + L+D ++P DLP Sbjct: 119 LQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSTRPDALLVDAMNVPVDLP--QL 176 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +IKGD+ S SIAAASI+AKV RD LM + YPDY FD + GY T H + +++ GP+ Sbjct: 177 ELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALRKYGPT 236 Query: 195 CIHRLTFRPLRNL 207 IHRLTF P+ + Sbjct: 237 PIHRLTFSPVSEM 249 >gi|145634215|ref|ZP_01789926.1| ribonuclease HII [Haemophilus influenzae PittAA] gi|145268659|gb|EDK08652.1| ribonuclease HII [Haemophilus influenzae PittAA] Length = 197 Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 118/182 (64%), Gaps = 1/182 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L E+I A+ ++ Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPNNPIQGLADSKKLSEKKRLALSEEIKEKALAWALG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+KGDS+ Sbjct: 71 RAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLAIPAQAVVKGDSLVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR +F P+ Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRRSFAPV 190 Query: 205 RN 206 + Sbjct: 191 KK 192 >gi|85714250|ref|ZP_01045238.1| ribonuclease HII/HIII [Nitrobacter sp. Nb-311A] gi|85698697|gb|EAQ36566.1| ribonuclease HII/HIII [Nitrobacter sp. Nb-311A] Length = 215 Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 90/184 (48%), Positives = 120/184 (65%), Gaps = 1/184 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + +WPVAG DE GRG LAGPVV AA++LDPN IP GI+DSK+++ +REEL+E+IT++A Sbjct: 3 RGVWPVAGCDEAGRGPLAGPVVAAAVVLDPNRIPEGIDDSKRLTAARREELFEEITATAS 62 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 +I+ A ID+ NI +A+L A+ AV L +DGR E + C+ VI GD Sbjct: 63 FAIAVAPIARIDRDNILRASLWALARAVHALPDAAEHVFVDGRDRIE-VACECEPVIGGD 121 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + LSIAAASI+AKVTRDRLM P YGF++H GY +H + + GPS HR Sbjct: 122 GLVLSIAAASIVAKVTRDRLMCRLALDCPGYGFETHKGYAVPEHLEALGRLGPSPHHRSF 181 Query: 201 FRPL 204 F P+ Sbjct: 182 FAPV 185 >gi|221066099|ref|ZP_03542204.1| Ribonuclease H [Comamonas testosteroni KF-1] gi|220711122|gb|EED66490.1| Ribonuclease H [Comamonas testosteroni KF-1] Length = 243 Score = 161 bits (408), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 88/180 (48%), Positives = 119/180 (66%), Gaps = 2/180 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DE GRG LAGPVV AA+ILD G+NDSKK++ +RE LY++I + A+ I+ Sbjct: 25 VAGVDEAGRGPLAGPVVAAAVILDDMKPIAGLNDSKKLTANRREVLYDEIRAKALCFCIA 84 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS Q ID+ NI KATL A+ AV L++ P L+DG +P+ + QA A++KGDS+ Sbjct: 85 QASVQEIDEINILKATLLAMRRAVMGLRLKPVLVLVDGNQLPQ-IDVQAEAIVKGDSLVQ 143 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKVTRDR +YP YGF H GY TA H Q ++ G + HR +F P+ Sbjct: 144 AISAASILAKVTRDRWCERLDAQYPQYGFAGHKGYGTAAHLQALRAHGATAEHRRSFAPV 203 >gi|254511405|ref|ZP_05123472.1| ribonuclease HII [Rhodobacteraceae bacterium KLH11] gi|221535116|gb|EEE38104.1| ribonuclease HII [Rhodobacteraceae bacterium KLH11] Length = 205 Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 87/198 (43%), Positives = 133/198 (67%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P++ELE + + VAG+DEVGRG LAGPVV AA+IL+P++ P G+NDSKK++ K+R Sbjct: 4 PNYELEQALLARGYVRVAGVDEVGRGPLAGPVVAAAVILNPDDFPEGLNDSKKLTAKRRG 63 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L + + A ++++ AS ID+HNI +A+ A+ AV L P LIDG IP L Sbjct: 64 ALDLALRAQASVAVAQASVAEIDEHNILRASHLAMVRAVAALNPAPDFLLIDGNMIPRGL 123 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + AV++GD+ S+SIA ASI+AK RDRLM +++P YG++++ GYPT +H++ ++ Sbjct: 124 KIPSQAVVRGDARSVSIAGASIVAKNWRDRLMVDLAQQHPGYGWEANAGYPTKQHREALR 183 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + HR +F+P+ N+ Sbjct: 184 NLGVTPHHRRSFKPVHNI 201 >gi|76788741|ref|YP_327827.1| ribonuclease HII [Chlamydia trachomatis A/HAR-13] gi|237804378|ref|YP_002888532.1| ribonuclease HII [Chlamydia trachomatis B/TZ1A828/OT] gi|97182374|sp|Q3KMZ3|RNH2_CHLTA RecName: Full=Ribonuclease HII; Short=RNase HII gi|76167271|gb|AAX50279.1| ribonuclease HII [Chlamydia trachomatis A/HAR-13] gi|231272678|emb|CAX09581.1| ribonuclease HII [Chlamydia trachomatis B/TZ1A828/OT] Length = 217 Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 6/201 (2%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E+ FE +A+ E+ VAG+DE GRG LAGPVV A IL + GI+DSKK++ K+ Sbjct: 13 EKSIFENQAI--EQGYSRVAGVDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQ 70 Query: 68 REELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 R LYE + + + S + ID+ NI +AT +A+ A+ +LQ P L+DG + Sbjct: 71 RRYLYELLLEDPEVDCGVGVVSVERIDEINILEATKEAMVQAIASLQSTPDFLLVDGLFL 130 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P +P + +IKGD+ S+SIAAASIIAK RD LMR H +YP+YGFD H GY TA H Sbjct: 131 PHKVP--SLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHL 188 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 Q +K GP HR +F P++ Sbjct: 189 QALKHFGPCVYHRKSFSPVKE 209 >gi|313114085|ref|ZP_07799637.1| ribonuclease HII [Faecalibacterium cf. prausnitzii KLE1255] gi|310623494|gb|EFQ06897.1| ribonuclease HII [Faecalibacterium cf. prausnitzii KLE1255] Length = 215 Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 87/193 (45%), Positives = 116/193 (60%), Gaps = 2/193 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P +E +A VR + AG+DE GRG L GPV VAA ILDP N FGINDSKK++ KKRE Sbjct: 12 PLYEYDAAVRSQ-YGCFAGVDEAGRGPLCGPVCVAACILDPENPVFGINDSKKLTEKKRE 70 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L+++I A+ I + ID+ NI AT+ + AVE L ++P L+DG P Sbjct: 71 ALFDEIIEKALAYKIVFVGPEIIDRDNILNATMGGMKQAVEELDIVPNLVLVDGNRTPAG 130 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L A V+KGD+ S SI AAS++AKV+RDR M ++YP Y H GYPT H ++I Sbjct: 131 LLVPAQPVVKGDATSASIGAASVLAKVSRDRYMLELDRQYPQYQLAKHKGYPTKLHYELI 190 Query: 189 KEKGPSCIHRLTF 201 + G +R +F Sbjct: 191 AQYGIQPFYRRSF 203 >gi|260432295|ref|ZP_05786266.1| ribonuclease HII [Silicibacter lacuscaerulensis ITI-1157] gi|260416123|gb|EEX09382.1| ribonuclease HII [Silicibacter lacuscaerulensis ITI-1157] Length = 229 Score = 161 bits (407), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 87/198 (43%), Positives = 130/198 (65%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F LE + + VAG+DEVGRG LAGPVV AA+IL+P +IP G+NDSKK++ ++R Sbjct: 23 PDFNLEREMMAQGHARVAGVDEVGRGPLAGPVVAAAVILNPQDIPKGLNDSKKLTARRRL 82 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L + + + SI+ AS ID NI A+ A+ AV L+ P LIDG IP+ L Sbjct: 83 ALDADLRARSEFSIAEASVAEIDDLNILYASHLAMVRAVAALKPAPDYVLIDGNLIPKGL 142 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A AV++GD+ S+SIAAASI+AK RD+LM +++P YG++++ GYP+ +H++ ++ Sbjct: 143 TVPARAVVRGDAKSVSIAAASILAKNWRDQLMVDLAQQHPGYGWETNAGYPSKQHREALQ 202 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + HR +F+P+ N+ Sbjct: 203 NLGVTPHHRRSFKPVHNI 220 >gi|260557476|ref|ZP_05829691.1| ribonuclease HII [Acinetobacter baumannii ATCC 19606] gi|260409102|gb|EEX02405.1| ribonuclease HII [Acinetobacter baumannii ATCC 19606] Length = 188 Score = 161 bits (407), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 87/183 (47%), Positives = 120/183 (65%), Gaps = 5/183 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A+ SI+ Sbjct: 3 VAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWSIA 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--PCQAFAVIKGDSI 142 A+H ID+ NI +AT A+ AVE L+ P+ ++DG IP+ + PC+A +I GD+ Sbjct: 63 EATHAEIDELNILQATFLAMQRAVEGLKTQPQKVIVDGNQIPKGIIIPCEA--IIGGDAS 120 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M ++YP +GF H GYPT H + I G HR ++ Sbjct: 121 HAEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYA 180 Query: 203 PLR 205 P++ Sbjct: 181 PVK 183 >gi|153213786|ref|ZP_01948994.1| ribonuclease HII [Vibrio cholerae 1587] gi|124115710|gb|EAY34530.1| ribonuclease HII [Vibrio cholerae 1587] Length = 206 Score = 161 bits (407), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 94/199 (47%), Positives = 123/199 (61%), Gaps = 7/199 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE+ A +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S KK Sbjct: 8 ELPPFEIPA-----GYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSEKK 62 Query: 68 REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L+ +I A+ ++ S Q ID+ NI +AT+ A+ AV L++ P LIDG IP Sbjct: 63 RLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNKIP 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + LP +A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 123 K-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAHFA 181 Query: 187 VIKEKGPSCIHRLTFRPLR 205 I++ G HR +F P++ Sbjct: 182 AIEQHGVIEQHRKSFGPVK 200 >gi|255002889|ref|ZP_05277853.1| ribonuclease HII [Anaplasma marginale str. Puerto Rico] Length = 238 Score = 161 bits (407), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 90/201 (44%), Positives = 123/201 (61%), Gaps = 3/201 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKK 67 P F +E +R + + G+DEVG GA+AGPVV AA+ L + I DSK +S KK Sbjct: 5 PSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKALSSKK 64 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 REEL+ KIT+ A + A + I++HNI A+ ++ ++NL V L+DG P Sbjct: 65 REELFCKITAHAKYGVGFARVREIEQHNILVASHISM-KTLQNLGVKADLVLVDGSRAPA 123 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP ++KGDSIS SIAAASIIAKVTRDR MR H++YP+Y ++ + GY T H Q Sbjct: 124 GLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKAHMQS 183 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 +K G + HR TF P++ LS Sbjct: 184 LKLYGKTAQHRSTFAPVKQLS 204 >gi|186476082|ref|YP_001857552.1| ribonuclease HII [Burkholderia phymatum STM815] gi|184192541|gb|ACC70506.1| Ribonuclease H [Burkholderia phymatum STM815] Length = 249 Score = 161 bits (407), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 89/183 (48%), Positives = 120/183 (65%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII-SI 83 V G+DE GRG LAGPVV AA+ILDP G+ DSK ++ KKR+ELYEKI A+ + Sbjct: 33 VCGVDEAGRGPLAGPVVAAAVILDPAKPRIRGLTDSKVLTAKKRDELYEKIIERALAYCV 92 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS + ID NI AT+ A+ AVE L+V P A IDG P L ++ A++ GD + Sbjct: 93 ASASVEEIDSLNILHATMLAMKRAVEGLRVTPTLAKIDGNRCPS-LSIRSEAIVSGDLLV 151 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR++ H+ +P YGFD+H GY T +H ++E GP HR +F P Sbjct: 152 PCISAASILAKVTRDRMLLELHRMFPVYGFDAHAGYGTPQHLTALREHGPCEHHRRSFAP 211 Query: 204 LRN 206 +R+ Sbjct: 212 VRD 214 >gi|254252072|ref|ZP_04945390.1| Ribonuclease H [Burkholderia dolosa AUO158] gi|124894681|gb|EAY68561.1| Ribonuclease H [Burkholderia dolosa AUO158] Length = 215 Score = 161 bits (407), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 87/181 (48%), Positives = 119/181 (65%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 V G+DE GRG LAGPVV AA+IL+P G++DSK +S KKR+ LYE I ++ ++ Sbjct: 29 VCGVDEAGRGPLAGPVVAAAVILNPERPIDGLDDSKVLSAKKRDALYELIVERSLAYCVA 88 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS ID NI AT+ A+ AVE L ++P A IDG P L +A A++ GD++ Sbjct: 89 SASVDEIDTLNILHATMLAMKRAVEGLSILPTLAQIDGNRCPT-LSVRAEAIVSGDALVP 147 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI+AASI+AKVTRDR++ H+++P YGF+ H GY T KH ++E GP HR +F P+ Sbjct: 148 SISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTEKHLAALREHGPCEAHRRSFAPV 207 Query: 205 R 205 R Sbjct: 208 R 208 >gi|330445159|ref|ZP_08308811.1| ribonuclease HII family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489350|dbj|GAA03308.1| ribonuclease HII family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 203 Score = 161 bits (407), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 87/183 (47%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK++ KKR L+++I A+ S+ Sbjct: 18 IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTEKKRNLLFDEIKEKALSWSLG 77 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 ID+ NI +AT+ A+ AV L + P LIDG +PE LP A AV+KGD Sbjct: 78 RCEADEIDELNILQATMVAMQRAVAGLHIQPDFVLIDGNKVPE-LPMAAQAVVKGDLRVA 136 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKVTRDR M +YP YGF H GYPT H + +++ G HR +F+P+ Sbjct: 137 EISAASIIAKVTRDREMEALDAEYPQYGFAKHKGYPTKAHFEALEQHGAIEQHRKSFKPV 196 Query: 205 RNL 207 + + Sbjct: 197 KRI 199 >gi|312622766|ref|YP_004024379.1| ribonuclease h [Caldicellulosiruptor kronotskyensis 2002] gi|312203233|gb|ADQ46560.1| Ribonuclease H [Caldicellulosiruptor kronotskyensis 2002] Length = 206 Score = 161 bits (407), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 86/198 (43%), Positives = 129/198 (65%), Gaps = 4/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 +FE+E + + + G+DE GRG LAGPV AA+++D I G+ DSKK++ KKRE+ Sbjct: 9 YFEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREK 68 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+E+I +I S++ + ID+ NI+ AT A+ +A+ENL++ P L+DG IP +L Sbjct: 69 LFEEIIKESIAYSVAMVDSKVIDEININNATFLAMKNAIENLKIEPDIVLVDGYKIP-NL 127 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A+IKGD S SIA ASI+AKV+RDR + KYP Y F+ H GY T +H ++++ Sbjct: 128 SFNQRAIIKGDKKSYSIACASILAKVSRDRFIVEISSKYPLYKFEKHKGYGTKEHIEILQ 187 Query: 190 EKGPSCIHRLTFRPLRNL 207 + GP IHR++F L+N+ Sbjct: 188 KYGPCEIHRISF--LKNI 203 >gi|226952655|ref|ZP_03823119.1| ribonuclease HII [Acinetobacter sp. ATCC 27244] gi|226836592|gb|EEH68975.1| ribonuclease HII [Acinetobacter sp. ATCC 27244] Length = 200 Score = 161 bits (407), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 90/192 (46%), Positives = 123/192 (64%), Gaps = 6/192 (3%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 +V NM +AG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I Sbjct: 7 LVERCNM-TIAGVDEAGRGPLVGSVVAAAVILDPNNPIEGLNDSKKLTEKKREKLFAEIQ 65 Query: 77 SSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--PCQA 133 A+ SI+ ASH ID+ NI +AT A+ AVE L P ++DG IP+ + PC+A Sbjct: 66 EKALAWSIAEASHVEIDEFNILQATFLAMRRAVEALATQPAKVIVDGNQIPKGITIPCEA 125 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++ GD+ I+AASI+AKVTRDR M+ +YP+YGF H GYPT H + I G Sbjct: 126 --IVGGDASHAEISAASILAKVTRDRQMKALDLEYPNYGFAKHKGYPTKAHFEAIAIHGV 183 Query: 194 SCIHRLTFRPLR 205 HR ++ P++ Sbjct: 184 IDEHRRSYGPVK 195 >gi|322507786|gb|ADX03240.1| rnhB [Acinetobacter baumannii 1656-2] Length = 188 Score = 161 bits (407), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 86/183 (46%), Positives = 120/183 (65%), Gaps = 5/183 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A+ SI+ Sbjct: 3 VAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWSIA 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--PCQAFAVIKGDSI 142 A+H ID+ NI +AT A+ AVE L+ P+ ++DG IP+ + PC+A ++ GD+ Sbjct: 63 EATHAEIDELNILQATFLAMQRAVEGLKTQPQKVIVDGNQIPKGIIIPCEA--IVGGDAS 120 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M ++YP +GF H GYPT H + I G HR ++ Sbjct: 121 HAEISAASILAKVTRDRQMAELDQQYPLFGFAKHQGYPTKAHFEAIAAHGVIDQHRRSYA 180 Query: 203 PLR 205 P++ Sbjct: 181 PVK 183 >gi|312134790|ref|YP_004002128.1| ribonuclease h [Caldicellulosiruptor owensensis OL] gi|311774841|gb|ADQ04328.1| Ribonuclease H [Caldicellulosiruptor owensensis OL] Length = 206 Score = 160 bits (406), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 86/198 (43%), Positives = 129/198 (65%), Gaps = 4/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 +FE+E + + + G+DE GRG LAGPV AA+++D I G+ DSKK++ KKRE+ Sbjct: 9 YFEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREK 68 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+E+I +I S++ + ID+ NI+ AT A+ +A+ENL++ P L+DG IP +L Sbjct: 69 LFEEIIKESIAYSVAMVDSKIIDEININNATFSAMKNAIENLKIEPDIVLVDGYEIP-NL 127 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A+IKGD S SIA ASI+AKV+RDR + KYP Y F+ H GY T +H ++++ Sbjct: 128 NFNQRAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPLYKFEKHKGYGTKEHIEILR 187 Query: 190 EKGPSCIHRLTFRPLRNL 207 + GP IHR++F L+N+ Sbjct: 188 KYGPCEIHRISF--LKNI 203 >gi|330950666|gb|EGH50926.1| ribonuclease HII [Pseudomonas syringae Cit 7] Length = 218 Score = 160 bits (406), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 89/181 (49%), Positives = 115/181 (63%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+LY +I A+ I+ Sbjct: 15 VAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKLYVEIQEKALCWFIA 74 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AVE L + PR ALIDG P+ L + V+KGDS Sbjct: 75 RAEVEEIDQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQ-LSVPSAPVVKGDSKVP 133 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P+ Sbjct: 134 AIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 193 Query: 205 R 205 R Sbjct: 194 R 194 >gi|327183486|gb|AEA31933.1| ribonuclease HII [Lactobacillus amylovorus GRL 1118] Length = 252 Score = 160 bits (406), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 89/193 (46%), Positives = 122/193 (63%), Gaps = 7/193 (3%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 EK W VAG+DEVGRG LAGPVV AA+I+D + +NDSKK++ ++R LY KI Sbjct: 58 EKEFWAKNQLVAGVDEVGRGPLAGPVVTAAVIIDHDFDLIDVNDSKKLTPERRLALYPKI 117 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A+ + I S Q ID+ NI++A A+ AV L + P + ++D ++P DLP Sbjct: 118 LEEAVSVGIGVKSSQVIDQINIYEADRQAMAQAVRALDIKPDALVVDAMNVPVDLP--QV 175 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +IKGD+ S SIAAASI+AKV RD+LM K YP YGF ++ GY T +H +K+ GP+ Sbjct: 176 KLIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFQNNAGYGTKEHIAALKKYGPT 235 Query: 195 CIHRLTFRPLRNL 207 IHR TF P+ + Sbjct: 236 AIHRKTFAPVSDF 248 >gi|315038209|ref|YP_004031777.1| ribonuclease HII [Lactobacillus amylovorus GRL 1112] gi|325956663|ref|YP_004292075.1| ribonuclease HII [Lactobacillus acidophilus 30SC] gi|312276342|gb|ADQ58982.1| ribonuclease HII [Lactobacillus amylovorus GRL 1112] gi|325333228|gb|ADZ07136.1| ribonuclease HII [Lactobacillus acidophilus 30SC] Length = 252 Score = 160 bits (406), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 89/193 (46%), Positives = 122/193 (63%), Gaps = 7/193 (3%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 EK W VAG+DEVGRG LAGPVV AA+I+D + +NDSKK++ ++R LY KI Sbjct: 58 EKEFWAKNQLVAGVDEVGRGPLAGPVVTAAVIIDHDFDLIDVNDSKKLTPERRLALYPKI 117 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A+ + I S Q ID+ NI++A A+ AV L + P + ++D ++P DLP Sbjct: 118 LEEAVSVGIGVKSSQVIDQINIYEADRQAMAQAVRALDIKPDALVVDAMNVPVDLP--QV 175 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +IKGD+ S SIAAASI+AKV RD+LM K YP YGF ++ GY T +H +K+ GP+ Sbjct: 176 KLIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFQNNAGYGTKEHIAALKKYGPT 235 Query: 195 CIHRLTFRPLRNL 207 IHR TF P+ + Sbjct: 236 AIHRKTFAPVSDF 248 >gi|145630149|ref|ZP_01785931.1| ribonuclease HII [Haemophilus influenzae R3021] gi|144984430|gb|EDJ91853.1| ribonuclease HII [Haemophilus influenzae R3021] Length = 197 Score = 160 bits (406), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 86/182 (47%), Positives = 118/182 (64%), Gaps = 1/182 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L E+I A+ ++ Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLALAEEIKEKALAWALG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI +A+L A+ A+++L++ P L+DG IP+DL A AV+KGDS+ Sbjct: 71 RAEANEIDEINILQASLLAMTRAIKSLKIQPHFVLVDGNKIPKDLAIPAQAVVKGDSLVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR +F P+ Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRRSFAPV 190 Query: 205 RN 206 + Sbjct: 191 KK 192 >gi|89092102|ref|ZP_01165057.1| ribonuclease HII [Oceanospirillum sp. MED92] gi|89083837|gb|EAR63054.1| ribonuclease HII [Oceanospirillum sp. MED92] Length = 199 Score = 160 bits (406), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 90/183 (49%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPN G+ DSKK++ K+RE LY +I A+ ++ Sbjct: 14 IAGVDEVGRGPLVGNVVAAAVILDPNKPIEGLADSKKLTAKRREALYHEIKDKALAWCVA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS + ID+ NI A++ A+ AVE L + +DG P DL C + V+KGDS Sbjct: 74 SASPEEIDQINILHASMLAMKRAVEGLPLKAEFVYVDGNRSP-DLECPSEPVVKGDSKIP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RDR M K YP YGF H GYPTA H +KE GP HR +F+P+ Sbjct: 133 EISAASILAKVDRDREMEELDKTYPQYGFAKHKGYPTAAHFAALKEHGPLLEHRRSFKPV 192 Query: 205 RNL 207 R L Sbjct: 193 REL 195 >gi|296158890|ref|ZP_06841718.1| Ribonuclease H [Burkholderia sp. Ch1-1] gi|295890765|gb|EFG70555.1| Ribonuclease H [Burkholderia sp. Ch1-1] Length = 247 Score = 160 bits (406), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 90/183 (49%), Positives = 122/183 (66%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAII-SI 83 V G+DE GRG LAGPVV AA+I DP+ + G++DSK +S KKR+ELY+KI A+ I Sbjct: 31 VCGVDEAGRGPLAGPVVAAAVIFDPSKPMIRGLDDSKVLSAKKRDELYDKIVDRALAYCI 90 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS + ID NI AT+ A+ AVE L V+P IDG P L ++ AVI GD++ Sbjct: 91 ASASVEEIDSLNILHATMLAMKRAVEGLSVVPTLVKIDGNRCPT-LSVRSEAVIGGDALV 149 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+ +P YGF++H GY T +H ++E GP HR +F P Sbjct: 150 KSISAASILAKVTRDRMLLELHQTHPVYGFNAHAGYGTPQHLAALREHGPCEHHRRSFAP 209 Query: 204 LRN 206 +R Sbjct: 210 VRE 212 >gi|295687798|ref|YP_003591491.1| Ribonuclease H [Caulobacter segnis ATCC 21756] gi|295429701|gb|ADG08873.1| Ribonuclease H [Caulobacter segnis ATCC 21756] Length = 209 Score = 160 bits (406), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 91/183 (49%), Positives = 117/183 (63%), Gaps = 4/183 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83 PV G+DE GRG AGPV AA+ILDP+ +P G+NDSKK++ K R L E+I + AI + Sbjct: 11 PVCGVDEAGRGPWAGPVSAAAVILDPDRVPKGLNDSKKLTAKARAALEEEIKAVAIAWCV 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPEDLPCQAFAVIKGDSI 142 AS + I ++NI AT A+ A+E L V P AL+DG P LPC+ V+KGDS+ Sbjct: 71 DMASIEEIAEYNILHATGRAMCRAIEGLSVTPAIALVDGNYRFP--LPCEIKTVVKGDSL 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 S SIAAASI+AK RDRLM YP YGF SH GY H + + + GPS IHRL + Sbjct: 129 SCSIAAASILAKEARDRLMIEMDAVYPGYGFASHKGYHARIHVEGLVKLGPSPIHRLGWA 188 Query: 203 PLR 205 P++ Sbjct: 189 PVK 191 >gi|66044605|ref|YP_234446.1| ribonuclease HII [Pseudomonas syringae pv. syringae B728a] gi|75502991|sp|Q4ZWR4|RNH2_PSEU2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|63255312|gb|AAY36408.1| Ribonuclease H [Pseudomonas syringae pv. syringae B728a] gi|330968946|gb|EGH69012.1| ribonuclease HII [Pseudomonas syringae pv. aceris str. M302273PT] Length = 218 Score = 160 bits (406), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 89/181 (49%), Positives = 115/181 (63%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+LY +I A+ I+ Sbjct: 15 VAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKLYVEIQEKALCWFIA 74 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AVE L + PR ALIDG P+ L + V+KGDS Sbjct: 75 RAEVEEIDQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQ-LSVPSAPVVKGDSKVP 133 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P+ Sbjct: 134 AIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 193 Query: 205 R 205 R Sbjct: 194 R 194 >gi|330896074|gb|EGH28295.1| ribonuclease HII [Pseudomonas syringae pv. japonica str. M301072PT] gi|330936802|gb|EGH40959.1| ribonuclease HII [Pseudomonas syringae pv. pisi str. 1704B] Length = 218 Score = 160 bits (406), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 89/181 (49%), Positives = 115/181 (63%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+LY +I A+ I+ Sbjct: 15 VAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKLYVEIQEKALCWFIA 74 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AVE L + PR ALIDG P+ L + V+KGDS Sbjct: 75 RAEVEEIDQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQ-LSVPSAPVVKGDSKVP 133 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P+ Sbjct: 134 AIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 193 Query: 205 R 205 R Sbjct: 194 R 194 >gi|104774162|ref|YP_619142.1| ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|123077255|sp|Q1G9U8|RNH2_LACDA RecName: Full=Ribonuclease HII; Short=RNase HII gi|103423243|emb|CAI98076.1| Ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 256 Score = 160 bits (406), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 89/193 (46%), Positives = 121/193 (62%), Gaps = 7/193 (3%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 EK+ W V G+DEVGRG LAGPVV AA+IL + +NDSKK+S +KR LY KI Sbjct: 59 EKDFWAKGQLVGGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLALYPKI 118 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A+ + + ++ ID+ NI++A A+ AVE L P + L+D ++P DLP Sbjct: 119 LQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSTRPDALLVDAMNVPVDLP--QL 176 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +IKGD+ S SIAAASI+AKV RD LM + YPDY FD + GY T H + +++ GP+ Sbjct: 177 ELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALRKYGPT 236 Query: 195 CIHRLTFRPLRNL 207 IHRLTF P+ + Sbjct: 237 PIHRLTFSPVSEM 249 >gi|258514489|ref|YP_003190711.1| ribonuclease HII [Desulfotomaculum acetoxidans DSM 771] gi|257778194|gb|ACV62088.1| Ribonuclease H [Desulfotomaculum acetoxidans DSM 771] Length = 268 Score = 160 bits (406), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 86/197 (43%), Positives = 129/197 (65%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +E E+ R K +AG+DE GRG LAGPVV AA+IL N G+NDSKK+ RE L Sbjct: 62 YEQESKYRSKGFGLIAGVDEAGRGPLAGPVVAAAVILPENACLPGLNDSKKLPVSARERL 121 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ ++ AS + I + NI +A+L A+ +V++L+V P L+DG + +LP Sbjct: 122 FVAIKPIALSWAVGMASVEEICELNILQASLLAMCRSVDSLKVKPDFVLVDGPN-GLNLP 180 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++++KGD++S SIA+ASI+AKVTRD++M H ++P+YGFD H GYPT +H + + Sbjct: 181 LPQYSLVKGDTLSASIASASILAKVTRDKIMLEYHDEFPEYGFDRHKGYPTVEHLRALTR 240 Query: 191 KGPSCIHRLTFRPLRNL 207 GP IHR F+P+++ Sbjct: 241 YGPCRIHRRDFKPVKDF 257 >gi|146310385|ref|YP_001175459.1| ribonuclease HII [Enterobacter sp. 638] gi|166991067|sp|A4W6S8|RNH2_ENT38 RecName: Full=Ribonuclease HII; Short=RNase HII gi|145317261|gb|ABP59408.1| Ribonuclease H [Enterobacter sp. 638] Length = 198 Score = 160 bits (406), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 89/182 (48%), Positives = 116/182 (63%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L+++I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALFDEIKEKALAWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L+++P LIDG P LP ++ AV+KGDS Sbjct: 72 RAEPEEIDELNILHATMLAMQRAVAGLKIVPEYVLIDGNRCPA-LPMRSLAVVKGDSRVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKVTRD M YP YGF H GYPTA H + + E GP+ HR +F P+ Sbjct: 131 EISAASIIAKVTRDAEMAALDLSYPQYGFAQHKGYPTAFHLEKLSEHGPTEHHRRSFGPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|184157471|ref|YP_001845810.1| ribonuclease HII [Acinetobacter baumannii ACICU] gi|239503491|ref|ZP_04662801.1| ribonuclease HII [Acinetobacter baumannii AB900] gi|332875053|ref|ZP_08442892.1| ribonuclease HII [Acinetobacter baumannii 6014059] gi|183209065|gb|ACC56463.1| Ribonuclease HII [Acinetobacter baumannii ACICU] gi|193076842|gb|ABO11570.2| RNAse HII [Acinetobacter baumannii ATCC 17978] gi|323517386|gb|ADX91767.1| ribonuclease HII [Acinetobacter baumannii TCDC-AB0715] gi|332736753|gb|EGJ67741.1| ribonuclease HII [Acinetobacter baumannii 6014059] Length = 188 Score = 160 bits (406), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 86/183 (46%), Positives = 120/183 (65%), Gaps = 5/183 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A+ SI+ Sbjct: 3 VAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWSIA 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--PCQAFAVIKGDSI 142 A+H ID+ NI +AT A+ AVE L+ P+ ++DG IP+ + PC+A ++ GD+ Sbjct: 63 EATHAEIDELNILQATFLAMQRAVEGLKTQPQKVIVDGNQIPKGIIIPCEA--IVGGDAS 120 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M ++YP +GF H GYPT H + I G HR ++ Sbjct: 121 HAEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYA 180 Query: 203 PLR 205 P++ Sbjct: 181 PVK 183 >gi|264679353|ref|YP_003279260.1| ribonuclease HII/HIII [Comamonas testosteroni CNB-2] gi|299532312|ref|ZP_07045705.1| ribonuclease HII [Comamonas testosteroni S44] gi|262209866|gb|ACY33964.1| ribonuclease HII/HIII [Comamonas testosteroni CNB-2] gi|298719720|gb|EFI60684.1| ribonuclease HII [Comamonas testosteroni S44] Length = 237 Score = 160 bits (406), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 88/180 (48%), Positives = 119/180 (66%), Gaps = 2/180 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DE GRG LAGPVV AA+ILD G+NDSKK++ +RE LY++I + A+ I+ Sbjct: 19 VAGVDEAGRGPLAGPVVAAAVILDDLKPIAGLNDSKKLTANRREVLYDEIRAKALCFCIA 78 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS Q ID+ NI KATL A+ AV L++ P L+DG +P+ + QA A++KGDS+ Sbjct: 79 QASVQEIDEINILKATLLAMRRAVMGLRLKPVLVLVDGNQLPQ-IDVQAEAIVKGDSLVQ 137 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKVTRDR +YP YGF H GY TA H Q ++ G + HR +F P+ Sbjct: 138 AISAASILAKVTRDRWCERLDAQYPQYGFAGHKGYGTAAHLQALRAHGATAEHRRSFAPV 197 >gi|187924419|ref|YP_001896061.1| ribonuclease HII [Burkholderia phytofirmans PsJN] gi|238689609|sp|B2T5I0|RNH2_BURPP RecName: Full=Ribonuclease HII; Short=RNase HII gi|187715613|gb|ACD16837.1| Ribonuclease H [Burkholderia phytofirmans PsJN] Length = 248 Score = 160 bits (406), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 88/183 (48%), Positives = 123/183 (67%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAII-SI 83 V G+DE GRG LAGPVV AA+I DP+ + G++DSK ++ KKR+ELY+KI A+ I Sbjct: 31 VCGVDEAGRGPLAGPVVAAAVIFDPSKPMIRGLDDSKVLTAKKRDELYDKIVDRALAYCI 90 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SA+ + ID NI AT+ A+ AVE L V+P IDG P L ++ AVI GD++ Sbjct: 91 ASATVEEIDSLNILHATMLAMKRAVEGLSVVPTLVKIDGNRCPT-LSVRSEAVIGGDALV 149 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+ +P YGF++H GY T +H + ++E GP HR +F P Sbjct: 150 KSISAASILAKVTRDRMLLELHQTHPVYGFNAHAGYGTPQHLKALREHGPCEHHRRSFAP 209 Query: 204 LRN 206 +R Sbjct: 210 VRE 212 >gi|255506601|ref|ZP_05382240.1| ribonuclease HII [Chlamydia trachomatis D(s)2923] gi|289525074|emb|CBJ14544.1| ribonuclease HII [Chlamydia trachomatis Sweden2] gi|296434614|gb|ADH16792.1| ribonuclease HII [Chlamydia trachomatis E/150] gi|296438332|gb|ADH20485.1| ribonuclease HII [Chlamydia trachomatis E/11023] Length = 217 Score = 160 bits (405), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 6/201 (2%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E+ FE +A+ E+ VAGIDE GRG LAGPVV A IL + GI+DSKK++ K+ Sbjct: 13 EKSIFENQAI--EQGYSQVAGIDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQ 70 Query: 68 REELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 R LYE + + + S + ID+ NI +AT +A+ A+ +L+ P L+DG + Sbjct: 71 RRYLYELLLEDPEVDCGVGVVSVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLFL 130 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P +P + +IKGD+ S+SIAAASIIAK RD LMR H +YP+YGFD H GY TA H Sbjct: 131 PHKIP--SLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHL 188 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 Q +K GP HR +F P++ Sbjct: 189 QALKHFGPCVYHRKSFSPVKE 209 >gi|125718010|ref|YP_001035143.1| ribonuclease HII [Streptococcus sanguinis SK36] gi|166226664|sp|A3CN38|RNH2_STRSV RecName: Full=Ribonuclease HII; Short=RNase HII gi|125497927|gb|ABN44593.1| Ribonuclease HII, putative [Streptococcus sanguinis SK36] Length = 254 Score = 160 bits (405), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 91/203 (44%), Positives = 130/203 (64%), Gaps = 9/203 (4%) Query: 12 FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 LE M+R EK ++ +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI Sbjct: 52 LRLEQMLRYEKELYKADYQAIAGIDEVGRGPLAGPVVAAAVILPPECKIKGLNDSKKIPK 111 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KK +E+Y+ + A+ + + +++ ID+ NI++AT A+ A+ L + P LID Sbjct: 112 KKHQEIYQAVLDKALAVGVGLMNNEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMK 171 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + D+P ++ +IKGD+ SLSIAAASI+AKVTRD+LM KK+P Y F + GY T H Sbjct: 172 LDVDIPQES--IIKGDANSLSIAAASIVAKVTRDKLMADYDKKFPGYDFAKNAGYGTRSH 229 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 Q ++ G + IHR TF P++++ Sbjct: 230 LQGLERSGVTPIHRKTFEPIKSM 252 >gi|293374717|ref|ZP_06621025.1| ribonuclease HII [Turicibacter sanguinis PC909] gi|325840606|ref|ZP_08167087.1| ribonuclease HII [Turicibacter sp. HGF1] gi|292646631|gb|EFF64633.1| ribonuclease HII [Turicibacter sanguinis PC909] gi|325490255|gb|EGC92588.1| ribonuclease HII [Turicibacter sp. HGF1] Length = 257 Score = 160 bits (405), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 92/194 (47%), Positives = 125/194 (64%), Gaps = 4/194 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +R + +AG+DEVGRG LAGPV+ AA+IL + FGI+DSKK+S KR YE+ Sbjct: 63 ENELRYSGIELIAGVDEVGRGPLAGPVIAAAVILPADCWLFGIDDSKKLSESKRLYFYEQ 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQ 132 I +AI I I + + ID++NI++AT A+ AV L P+ L+D S+P D+P Sbjct: 123 IKKNAISIGIGICTSEEIDQYNIYEATKIAMERAVSKLNPKPQHLLLDAMSLPRLDIP-- 180 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGDS S+SIAAASIIAKVTRD M+ YP YGF+ HVGY T +H I++ G Sbjct: 181 QTSIIKGDSKSVSIAAASIIAKVTRDAYMKKLGSAYPQYGFERHVGYGTKEHLLAIEQHG 240 Query: 193 PSCIHRLTFRPLRN 206 HR +F P+R+ Sbjct: 241 IISEHRKSFEPIRS 254 >gi|121586247|ref|ZP_01676037.1| ribonuclease HII [Vibrio cholerae 2740-80] gi|121549513|gb|EAX59539.1| ribonuclease HII [Vibrio cholerae 2740-80] Length = 206 Score = 160 bits (405), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 94/199 (47%), Positives = 123/199 (61%), Gaps = 7/199 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE+ A +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S KK Sbjct: 8 ELPPFEIPA-----GYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSEKK 62 Query: 68 REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L+ +I A+ ++ S Q ID+ NI +AT+ A+ A+ L+V P LIDG IP Sbjct: 63 RLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAIAGLRVQPDLVLIDGNKIP 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + LP +A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 123 K-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAHFA 181 Query: 187 VIKEKGPSCIHRLTFRPLR 205 I++ G HR +F P++ Sbjct: 182 AIEQHGVIEQHRKSFGPVK 200 >gi|15642244|ref|NP_231877.1| ribonuclease HII [Vibrio cholerae O1 biovar El Tor str. N16961] gi|147673627|ref|YP_001217761.1| ribonuclease HII [Vibrio cholerae O395] gi|153817064|ref|ZP_01969731.1| ribonuclease HII [Vibrio cholerae NCTC 8457] gi|153820817|ref|ZP_01973484.1| ribonuclease HII [Vibrio cholerae B33] gi|227082370|ref|YP_002810921.1| ribonuclease HII [Vibrio cholerae M66-2] gi|229507680|ref|ZP_04397185.1| ribonuclease HII [Vibrio cholerae BX 330286] gi|229512125|ref|ZP_04401604.1| ribonuclease HII [Vibrio cholerae B33] gi|229519260|ref|ZP_04408703.1| ribonuclease HII [Vibrio cholerae RC9] gi|229607184|ref|YP_002877832.1| ribonuclease HII [Vibrio cholerae MJ-1236] gi|254849376|ref|ZP_05238726.1| ribonuclease HII [Vibrio cholerae MO10] gi|255747057|ref|ZP_05421002.1| ribonuclease HII [Vibrio cholera CIRS 101] gi|262161398|ref|ZP_06030508.1| ribonuclease HII [Vibrio cholerae INDRE 91/1] gi|298500379|ref|ZP_07010184.1| ribonuclease HII [Vibrio cholerae MAK 757] gi|12644303|sp|P52021|RNH2_VIBCH RecName: Full=Ribonuclease HII; Short=RNase HII gi|172047613|sp|A5F626|RNH2_VIBC3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|254808006|sp|C3LQ18|RNH2_VIBCM RecName: Full=Ribonuclease HII; Short=RNase HII gi|9656806|gb|AAF95390.1| ribonuclease HII [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126512332|gb|EAZ74926.1| ribonuclease HII [Vibrio cholerae NCTC 8457] gi|126521609|gb|EAZ78832.1| ribonuclease HII [Vibrio cholerae B33] gi|146315510|gb|ABQ20049.1| ribonuclease HII [Vibrio cholerae O395] gi|227010258|gb|ACP06470.1| ribonuclease HII [Vibrio cholerae M66-2] gi|227014142|gb|ACP10352.1| ribonuclease HII [Vibrio cholerae O395] gi|229343949|gb|EEO08924.1| ribonuclease HII [Vibrio cholerae RC9] gi|229352090|gb|EEO17031.1| ribonuclease HII [Vibrio cholerae B33] gi|229355185|gb|EEO20106.1| ribonuclease HII [Vibrio cholerae BX 330286] gi|229369839|gb|ACQ60262.1| ribonuclease HII [Vibrio cholerae MJ-1236] gi|254845081|gb|EET23495.1| ribonuclease HII [Vibrio cholerae MO10] gi|255735459|gb|EET90859.1| ribonuclease HII [Vibrio cholera CIRS 101] gi|262028709|gb|EEY47363.1| ribonuclease HII [Vibrio cholerae INDRE 91/1] gi|297541072|gb|EFH77126.1| ribonuclease HII [Vibrio cholerae MAK 757] Length = 206 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 94/199 (47%), Positives = 123/199 (61%), Gaps = 7/199 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE+ A +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S KK Sbjct: 8 ELPPFEIPA-----GYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSEKK 62 Query: 68 REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L+ +I A+ ++ S Q ID+ NI +AT+ A+ AV L++ P LIDG IP Sbjct: 63 RLALFPEIQVKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNKIP 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + LP +A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 123 K-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAHFA 181 Query: 187 VIKEKGPSCIHRLTFRPLR 205 I++ G HR +F P++ Sbjct: 182 AIEQHGVIEQHRKSFGPVK 200 >gi|296435545|gb|ADH17719.1| ribonuclease HII [Chlamydia trachomatis G/9768] gi|296437405|gb|ADH19566.1| ribonuclease HII [Chlamydia trachomatis G/11074] gi|297139904|gb|ADH96662.1| ribonuclease HII [Chlamydia trachomatis G/9301] Length = 217 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 6/201 (2%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E+ FE +A+ E+ VAGIDE GRG LAGPVV A IL + GI+DSKK++ K+ Sbjct: 13 EKSIFENQAI--EQGYSQVAGIDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQ 70 Query: 68 REELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 R LYE + + + S + ID+ NI +AT +A+ A+ +L+ P L+DG + Sbjct: 71 RRYLYELLLEDPEVDCGVGVVSVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLFL 130 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P +P + +IKGD+ S+SIAAASIIAK RD LMR H +YP+YGFD H GY TA H Sbjct: 131 PHKVP--SLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHL 188 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 Q +K GP HR +F P++ Sbjct: 189 QALKHFGPCVYHRKSFSPVKE 209 >gi|224370178|ref|YP_002604342.1| RnhB [Desulfobacterium autotrophicum HRM2] gi|223692895|gb|ACN16178.1| RnhB [Desulfobacterium autotrophicum HRM2] Length = 197 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 89/178 (50%), Positives = 118/178 (66%), Gaps = 2/178 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DE GRG LAGPVV AA++LD GI DSKK+S KKRE LY+ I A+ + + Sbjct: 16 IAGVDEAGRGPLAGPVVSAAVVLDDGFPDHGIMDSKKLSPKKRELLYDVIMDKALGVCVG 75 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 ASH ID+ NI +A+L ++ AV L + P LIDG + D Q ++KGD++S+ Sbjct: 76 IASHHEIDRINILRASLLSMRRAVNGLPLKPDYLLIDG-TFFIDSSIQQQVIVKGDALSV 134 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SIAAASI+AKVTRDR+M + YP YGF H GYPT H+Q + E GPS +HR +F+ Sbjct: 135 SIAAASIVAKVTRDRIMVDMDQLYPGYGFARHKGYPTKAHKQALVELGPSPVHRYSFK 192 >gi|68249618|ref|YP_248730.1| ribonuclease HII [Haemophilus influenzae 86-028NP] gi|81335953|sp|Q4QLM7|RNH2_HAEI8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|68057817|gb|AAX88070.1| ribonuclease HII [Haemophilus influenzae 86-028NP] Length = 197 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 86/182 (47%), Positives = 118/182 (64%), Gaps = 1/182 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L E+I A+ ++ Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLALAEEIKEKALAWALG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+KGD++ Sbjct: 71 RAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLAIPAQAVVKGDNLVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR +F P+ Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRRSFAPV 190 Query: 205 RN 206 + Sbjct: 191 KK 192 >gi|330872713|gb|EGH06862.1| ribonuclease HII [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 217 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 89/181 (49%), Positives = 116/181 (64%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84 VAG+DEVGRG L G VV AA+ILDP FG+NDSKK++ KRE+L+ +I A+ I+ Sbjct: 14 VAGVDEVGRGPLCGAVVTAAVILDPARPIFGLNDSKKLTEAKREKLFVEIQEKALCWFIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AVE L + P+ ALIDG P+ L + V+KGDS Sbjct: 74 RAEVEEIDQLNILHATMLAMKRAVEGLNITPKLALIDGNRCPQ-LSVPSAPVVKGDSKVP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P+ Sbjct: 133 AIAAASILAKVSRDREMAALELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFGPV 192 Query: 205 R 205 R Sbjct: 193 R 193 >gi|169833197|ref|YP_001694596.1| ribonuclease HII [Streptococcus pneumoniae Hungary19A-6] gi|238688296|sp|B1IBW1|RNH2_STRPI RecName: Full=Ribonuclease HII; Short=RNase HII gi|168995699|gb|ACA36311.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae Hungary19A-6] Length = 259 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 92/204 (45%), Positives = 130/204 (63%), Gaps = 9/204 (4%) Query: 11 HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 + LE+M+ EK ++ +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI Sbjct: 51 NLRLESMLSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KK E+++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + DLP ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAK Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAK 228 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H + + + G + IHR +F P+++L Sbjct: 229 HLEGLTKLGATPIHRTSFEPVKSL 252 >gi|254492019|ref|ZP_05105197.1| ribonuclease HII [Methylophaga thiooxidans DMS010] gi|224462834|gb|EEF79105.1| ribonuclease HII [Methylophaga thiooxydans DMS010] Length = 190 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 90/181 (49%), Positives = 117/181 (64%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG LAGPVV AA+ILDP+N G+ DSKK+S K+RE L I A+ ++ Sbjct: 7 VAGVDEVGRGPLAGPVVTAAVILDPDNPIEGLADSKKLSEKRREFLVPLIKEHALAWAMG 66 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI +A+L A+ AVE L + P L+DG P DL C+ VIKGD Sbjct: 67 RAEPEEIDQINILQASLLAMKRAVEALSITPGHVLVDGIHAP-DLNCKTTTVIKGDQKEP 125 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV RDR M YP YGF H GYPT +HQ+ + + G + IHR +F P+ Sbjct: 126 AIAAASILAKVARDREMHEMDLMYPGYGFAQHKGYPTKQHQKALADLGVTDIHRRSFSPV 185 Query: 205 R 205 + Sbjct: 186 Q 186 >gi|148828223|ref|YP_001292976.1| ribonuclease HII [Haemophilus influenzae PittGG] gi|166225191|sp|A5UII7|RNH2_HAEIG RecName: Full=Ribonuclease HII; Short=RNase HII gi|148719465|gb|ABR00593.1| ribonuclease HII [Haemophilus influenzae PittGG] Length = 197 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 118/182 (64%), Gaps = 1/182 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L ++I A+ ++ Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLALADEIKEKALAWALG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+KGDSI Sbjct: 71 RAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLAIPAQAVVKGDSIVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR +F P+ Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAEFGALPQHRRSFAPV 190 Query: 205 RN 206 + Sbjct: 191 KK 192 >gi|119384834|ref|YP_915890.1| ribonuclease H [Paracoccus denitrificans PD1222] gi|189043634|sp|A1B3V0|RNH2_PARDP RecName: Full=Ribonuclease HII; Short=RNase HII gi|119374601|gb|ABL70194.1| RNase HII [Paracoccus denitrificans PD1222] Length = 210 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 84/195 (43%), Positives = 122/195 (62%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + LE VAG+DEVGRG LAGPV AA+ILD IP G+NDSKK++ K+RE Sbjct: 4 PDYSLEEAALRSGARFVAGVDEVGRGPLAGPVTAAAVILDAGCIPEGLNDSKKLTAKRRE 63 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L E + + ++ AS + ID+ NI +A+ A+ A+ L+ P L+DG +P DL Sbjct: 64 ALAELVMARCDWAVGHASVEEIDRLNILRASHLAMCRAIAGLRQRPCLVLVDGNMLPRDL 123 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 AV+ GD+ LSIAAASI+AK+ RDR+M +++P YG++++ GYPT H+Q + Sbjct: 124 DLPGQAVVGGDARCLSIAAASILAKLLRDRIMVDLAQQHPGYGWEANAGYPTPAHRQALL 183 Query: 190 EKGPSCIHRLTFRPL 204 + G + HR +F P+ Sbjct: 184 DLGVTPYHRRSFAPV 198 >gi|89070017|ref|ZP_01157348.1| ribonuclease HII [Oceanicola granulosus HTCC2516] gi|89044354|gb|EAR50492.1| ribonuclease HII [Oceanicola granulosus HTCC2516] Length = 211 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 82/196 (41%), Positives = 124/196 (63%), Gaps = 2/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE A+ ++ +AG+DEVGRG LAGPV AA++LDP IP G+ DSK + +RE L Sbjct: 9 FETRAL--QRGFARIAGVDEVGRGPLAGPVTAAAVVLDPARIPEGLADSKALPRARREAL 66 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++ A ++++ S ID HNI +A+ A+ A+ L+ ALIDG +P DL C Sbjct: 67 DAELREVACVAVAHCSVAEIDTHNILRASHIAMCRALAALEQTCDHALIDGNMLPRDLAC 126 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A++KGD+ LSIAAASI+AKV RDR+M +++P YG+++++GY T H+ ++ Sbjct: 127 SGEALVKGDARCLSIAAASIVAKVARDRIMVDLAQQHPGYGWETNMGYGTKGHRSALQNL 186 Query: 192 GPSCIHRLTFRPLRNL 207 G + HR +F P+ N+ Sbjct: 187 GVTPHHRRSFAPIYNI 202 >gi|160945102|ref|ZP_02092328.1| hypothetical protein FAEPRAM212_02621 [Faecalibacterium prausnitzii M21/2] gi|158442833|gb|EDP19838.1| hypothetical protein FAEPRAM212_02621 [Faecalibacterium prausnitzii M21/2] gi|295105649|emb|CBL03193.1| RNase HII [Faecalibacterium prausnitzii SL3/3] Length = 215 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 86/193 (44%), Positives = 115/193 (59%), Gaps = 2/193 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + +A VR + AG+DE GRG L GPV VAA ILDP N +GINDSKK++ KKRE Sbjct: 12 PLYAFDAEVRSQYGC-FAGVDEAGRGPLCGPVCVAACILDPENPVYGINDSKKLTEKKRE 70 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L+++I A+ I + ID+ NI AT+ + AVE L ++P L+DG P Sbjct: 71 ALFDEICEKALAYRIIFVGPEVIDRENILNATMGGMQQAVEELDIVPNLVLVDGNRTPAG 130 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L A V+KGD+ S SI AAS++AKV+RDR M K+YP Y H GYPT H ++I Sbjct: 131 LQIPAQPVVKGDATSASIGAASVLAKVSRDRYMLELDKQYPQYQLAKHKGYPTKLHYELI 190 Query: 189 KEKGPSCIHRLTF 201 + G +R +F Sbjct: 191 AQYGIQPFYRRSF 203 >gi|330807795|ref|YP_004352257.1| ribonuclease HII [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375903|gb|AEA67253.1| ribonuclease HII [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 214 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 92/195 (47%), Positives = 122/195 (62%), Gaps = 6/195 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F L A V E VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+L Sbjct: 12 FNLVAEVEEL----VAGVDEVGRGPLCGAVVTAAVILDPKRPILGLNDSKKLTEARREKL 67 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y++I A+ I+ A + ID+ NI AT+ A+ AV+ L + P+ A+IDG P+ L Sbjct: 68 YDEICEKALSWCIARAEVEEIDELNILHATMLAMQRAVQGLHITPKLAMIDGNRCPK-LS 126 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +A AVI+GD +IAAASI+AKV+RDR M YP YG H GYPT H + + Sbjct: 127 MRAEAVIQGDGKVPAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALAR 186 Query: 191 KGPSCIHRLTFRPLR 205 GP+ IHR +F P+R Sbjct: 187 LGPTPIHRRSFAPVR 201 >gi|253988139|ref|YP_003039495.1| ribonuclease HII [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779589|emb|CAQ82750.1| ribonuclease HII [Photorhabdus asymbiotica] Length = 196 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 90/182 (49%), Positives = 117/182 (64%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP+ G+ DSKK+S K+REELY +IT A+ S+ Sbjct: 12 IAGVDEVGRGPLVGAVVTAAVILDPSRPIAGLADSKKLSEKRREELYLEITEKALCWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L + P LIDG PE LP A AVIKGD + Sbjct: 72 RAEPEEIDQLNILHATMLAMQRAVAGLSISPEYVLIDGNRCPE-LPMPAQAVIKGDGLVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M + +P+YGF H GYPTA H + + G + HR +F P+ Sbjct: 131 EISAASIVAKVTRDREMVELDQLFPEYGFAKHKGYPTALHLEKLVLLGATKHHRKSFAPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|312793164|ref|YP_004026087.1| ribonuclease h [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180304|gb|ADQ40474.1| Ribonuclease H [Caldicellulosiruptor kristjanssonii 177R1B] Length = 206 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 85/203 (41%), Positives = 131/203 (64%), Gaps = 4/203 (1%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + + +FE+E + + + G+DE GRG LAGPV AA+++D I G+ DSKK++ Sbjct: 4 LEDENYFEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKKIIEGVRDSKKLTP 63 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKRE+L+++I +I S++ + ID+ NI+ AT A+ +A+ENL++ P L+DG Sbjct: 64 KKREKLFDEIIKESIAYSVAMVDSKIIDEININNATFLAMKNAIENLKIEPDIVLVDGYE 123 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IP +L A+IKGD S SIA ASI+AKV+RDR + KYP Y F+ H GY T +H Sbjct: 124 IP-NLSFNQMAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPVYKFEKHKGYGTKEH 182 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 +++++ GP IHR++F L+N+ Sbjct: 183 IEILQKYGPCEIHRISF--LKNI 203 >gi|237800157|ref|ZP_04588618.1| ribonuclease HII [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023014|gb|EGI03071.1| ribonuclease HII [Pseudomonas syringae pv. oryzae str. 1_6] Length = 217 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 89/181 (49%), Positives = 116/181 (64%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+L+ +I A+ I+ Sbjct: 14 VAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLFVEIQEKALCWFIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AVE L V P+ ALIDG P+ L + V+KGDS Sbjct: 74 RAEVEEIDQLNILHATMLAMKRAVEGLSVTPKLALIDGNRCPQ-LSVPSAPVVKGDSKVP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV+RDR M YP YG H GYPTA H + + GP+ IHR +F P+ Sbjct: 133 AIAAASILAKVSRDREMAALELVYPGYGIGGHKGYPTAVHLEALARLGPTPIHRRSFGPV 192 Query: 205 R 205 R Sbjct: 193 R 193 >gi|269101953|ref|ZP_06154650.1| ribonuclease HII [Photobacterium damselae subsp. damselae CIP 102761] gi|268161851|gb|EEZ40347.1| ribonuclease HII [Photobacterium damselae subsp. damselae CIP 102761] Length = 201 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 93/197 (47%), Positives = 121/197 (61%), Gaps = 5/197 (2%) Query: 13 ELEAMVR-EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ELE V E N+ +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L Sbjct: 4 ELEPFVYPEANL--IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLSEKKRNAL 61 Query: 72 YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +++I A+ S+ ID+ NI +AT+ A+ AV L + P LIDG PE LP Sbjct: 62 FDEIKEKALAWSLGRCEADEIDELNILQATMVAMQRAVAGLNITPDFVLIDGNKTPE-LP 120 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A AV+KGD I+AASI+AKVTRDR M +YP +GF H GYPT H ++E Sbjct: 121 MAAQAVVKGDLRVAEISAASILAKVTRDREMDELDAQYPQFGFAKHKGYPTKAHFAALEE 180 Query: 191 KGPSCIHRLTFRPLRNL 207 G HR +F+P++ + Sbjct: 181 HGVIEQHRKSFKPVKRI 197 >gi|322515100|ref|ZP_08068107.1| ribonuclease HII [Actinobacillus ureae ATCC 25976] gi|322118906|gb|EFX91088.1| ribonuclease HII [Actinobacillus ureae ATCC 25976] Length = 197 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 89/183 (48%), Positives = 119/183 (65%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L E+I + A+ S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLLLAEEIKAKALCWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L + P L+DG IP LP A AVIKGDS+ Sbjct: 73 RAEPEEIDQLNILHATMLAMQRAVAGLNIWPDFVLVDGNHIP-TLPMPAQAVIKGDSLVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M K+YP+YGF H GYPT H + +++ G + HR +F P+ Sbjct: 132 EISAASILAKVARDQEMDELDKQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKSFAPV 191 Query: 205 RNL 207 + + Sbjct: 192 KKI 194 >gi|307708682|ref|ZP_07645145.1| ribonuclease HII [Streptococcus mitis NCTC 12261] gi|307615256|gb|EFN94466.1| ribonuclease HII [Streptococcus mitis NCTC 12261] Length = 259 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 88/194 (45%), Positives = 126/194 (64%), Gaps = 3/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + ++ + +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI KK E+++ Sbjct: 61 EKELYKQGLTMIAGVDEVGRGPLAGPVVAAAVILPKNCKITGLNDSKKIPKKKHLEIFQA 120 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 + A+ I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 121 VQDQALSIGIGIMDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLPISQ 178 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + +K+ G Sbjct: 179 TSIIKGDANSLSIAAASIVAKVTRDELMKEFDQQFPGYDFAANAGYGTAKHLEGLKKIGV 238 Query: 194 SCIHRLTFRPLRNL 207 + IHR +F P+++L Sbjct: 239 TPIHRTSFEPVKSL 252 >gi|229522192|ref|ZP_04411609.1| ribonuclease HII [Vibrio cholerae TM 11079-80] gi|229341117|gb|EEO06122.1| ribonuclease HII [Vibrio cholerae TM 11079-80] Length = 206 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 93/199 (46%), Positives = 122/199 (61%), Gaps = 7/199 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE+ A +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S KK Sbjct: 8 ELPPFEIPA-----GYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSEKK 62 Query: 68 REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L+ +I A+ ++ S Q ID+ NI +AT+ A+ AV L++ P LIDG P Sbjct: 63 RLALFPEIQEKALAWAVGRCSTQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNKTP 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + LP +A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 123 K-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAHFA 181 Query: 187 VIKEKGPSCIHRLTFRPLR 205 I++ G HR +F P++ Sbjct: 182 AIEQHGVIEQHRKSFGPVK 200 >gi|153825313|ref|ZP_01977980.1| ribonuclease HII [Vibrio cholerae MZO-2] gi|183179455|ref|ZP_02957666.1| ribonuclease HII [Vibrio cholerae MZO-3] gi|229513888|ref|ZP_04403350.1| ribonuclease HII [Vibrio cholerae TMA 21] gi|297580889|ref|ZP_06942814.1| ribonuclease HII [Vibrio cholerae RC385] gi|149740997|gb|EDM55066.1| ribonuclease HII [Vibrio cholerae MZO-2] gi|183012866|gb|EDT88166.1| ribonuclease HII [Vibrio cholerae MZO-3] gi|229349069|gb|EEO14026.1| ribonuclease HII [Vibrio cholerae TMA 21] gi|297534715|gb|EFH73551.1| ribonuclease HII [Vibrio cholerae RC385] Length = 206 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 94/199 (47%), Positives = 122/199 (61%), Gaps = 7/199 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE+ A +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S KK Sbjct: 8 ELPPFEIPA-----GYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSEKK 62 Query: 68 REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L+ +I A+ ++ S Q ID+ NI +AT+ A+ AV L++ P LIDG IP Sbjct: 63 RLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNKIP 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + LP A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 123 K-LPMAAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAHFA 181 Query: 187 VIKEKGPSCIHRLTFRPLR 205 I++ G HR +F P++ Sbjct: 182 AIEQHGVIEQHRKSFGPVK 200 >gi|259907556|ref|YP_002647912.1| Ribonuclease HII [Erwinia pyrifoliae Ep1/96] gi|224963178|emb|CAX54662.1| Ribonuclease HII [Erwinia pyrifoliae Ep1/96] gi|283477396|emb|CAY73312.1| rnhB [Erwinia pyrifoliae DSM 12163] Length = 207 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 88/184 (47%), Positives = 117/184 (63%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 W +AG+DEVGRG L G VV AA+ILDP+ G+ DSKK+S K+R LY++I A+ S Sbjct: 10 WLIAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLGDSKKLSEKRRLALYDEIKDRALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI AT+ A+ AV L + P LIDG P+ L + AV+KGDS+ Sbjct: 70 LGRAEPEEIDRLNILHATMLAMQRAVAGLHLTPDFVLIDGNRCPQ-LAMPSRAVVKGDSL 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M ++YP YGF H GYPTA H + + G + HR +F Sbjct: 129 VPEISAASIMAKVTRDREMCELDQQYPQYGFARHKGYPTAVHMEKLARFGVTPQHRRSFA 188 Query: 203 PLRN 206 P+RN Sbjct: 189 PVRN 192 >gi|146308060|ref|YP_001188525.1| ribonuclease HII [Pseudomonas mendocina ymp] gi|166226640|sp|A4XWS7|RNH2_PSEMY RecName: Full=Ribonuclease HII; Short=RNase HII gi|145576261|gb|ABP85793.1| Ribonuclease H [Pseudomonas mendocina ymp] Length = 208 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/183 (48%), Positives = 117/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE L+++I A+ I+ Sbjct: 14 VAGVDEVGRGPLCGAVVTAAVILDPLRPIIGLNDSKKLTEARREVLFDEIREKALAWCIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AVE L V P+ ALIDG P L + V+KGDS Sbjct: 74 RAEVEEIDRLNILHATMLAMQRAVEGLSVTPKLALIDGNRCPR-LTVPSAPVVKGDSRVP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV+RDR M + YP YG H GYPT H + ++ GP+ IHR +F P+ Sbjct: 133 AIAAASILAKVSRDREMLEMDRLYPGYGIAGHKGYPTPVHLEALQRLGPTPIHRRSFAPV 192 Query: 205 RNL 207 R L Sbjct: 193 RAL 195 >gi|312878029|ref|ZP_07737967.1| Ribonuclease H [Caldicellulosiruptor lactoaceticus 6A] gi|311795181|gb|EFR11572.1| Ribonuclease H [Caldicellulosiruptor lactoaceticus 6A] Length = 206 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 85/198 (42%), Positives = 129/198 (65%), Gaps = 4/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 +FE+E + + + G+DE GRG LAGPV AA+++D I G+ DSKK++ KKRE+ Sbjct: 9 YFEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREK 68 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+++I +I S++ + ID+ NI+ AT A+ +A+ENL++ P L+DG IP +L Sbjct: 69 LFDEIIKESIAYSVAMVDSKIIDEININNATFLAMKNAIENLKIEPDIVLVDGYEIP-NL 127 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A+IKGD S SIA ASI+AKV+RDR + KYP Y F+ H GY T +H ++++ Sbjct: 128 SFNQMAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPVYKFEKHKGYGTKEHIEILQ 187 Query: 190 EKGPSCIHRLTFRPLRNL 207 + GP IHR++F L+N+ Sbjct: 188 KYGPCEIHRISF--LKNI 203 >gi|212639582|ref|YP_002316102.1| ribonuclease HII [Anoxybacillus flavithermus WK1] gi|226736811|sp|B7GGD5|RNH2_ANOFW RecName: Full=Ribonuclease HII; Short=RNase HII gi|212561062|gb|ACJ34117.1| Ribonuclease HII [Anoxybacillus flavithermus WK1] Length = 259 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 93/204 (45%), Positives = 128/204 (62%), Gaps = 7/204 (3%) Query: 8 ERPHF----ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 ER F + E + +K + +AG+DEVGRG LAGPVV AA+IL + ++DSKK+ Sbjct: 52 ERERFLHMLQYEQALYDKGIRYIAGVDEVGRGPLAGPVVAAAVILPKDVYLPHVDDSKKL 111 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S KRE+L+ I A+ I I S + ID+ NI++AT A+ AV L + P LID Sbjct: 112 SETKREQLFSIIQQMALAIGIGIVSAREIDERNIYEATKKAMMQAVHALAIAPEHLLIDA 171 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 IP +P ++IKGD+ S+SIAA+SIIAKVTRDR+M+ +KYP YGF+ H+GY T Sbjct: 172 MHIPLSIP--QTSIIKGDAHSVSIAASSIIAKVTRDRMMKQLGEKYPQYGFEKHMGYGTK 229 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRN 206 +H Q I+ G HR +F P+R Sbjct: 230 EHLQAIERYGVIEEHRRSFAPIRE 253 >gi|84389778|ref|ZP_00991330.1| ribonuclease HII [Vibrio splendidus 12B01] gi|84376879|gb|EAP93753.1| ribonuclease HII [Vibrio splendidus 12B01] Length = 206 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 118/182 (64%), Gaps = 2/182 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85 AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKR L+ +I A+ S+ Sbjct: 22 AGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALFPEIKEKALAWSVGR 81 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S Q ID+ NI +AT+ A+ A+ L V P ALIDG +PE LP A++KGD Sbjct: 82 CSPQEIDEWNILQATMVAMQRAIAGLSVQPDMALIDGNRVPE-LPMDGLAIVKGDLRVAE 140 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASIIAKV RD+ M K +P++GF H GYPT H + I++ G + +R +F+P++ Sbjct: 141 ISAASIIAKVVRDQEMEELDKLHPEFGFAQHKGYPTKAHFEAIEKHGVTEHYRKSFKPVK 200 Query: 206 NL 207 + Sbjct: 201 RI 202 >gi|262404580|ref|ZP_06081135.1| ribonuclease HII [Vibrio sp. RC586] gi|262349612|gb|EEY98750.1| ribonuclease HII [Vibrio sp. RC586] Length = 206 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 93/199 (46%), Positives = 121/199 (60%), Gaps = 2/199 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 ++P EL A +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S KK Sbjct: 3 KKPSIELPAFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSEKK 62 Query: 68 REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L+ +I A+ S+ S Q ID+ NI +AT+ A+ AV L V P L+DG +P Sbjct: 63 RLALFPEIQEKALAWSVGRCSPQEIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNKVP 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + LP +A AV+KGD I+AASIIAKV RD M K+YP +GF H GYPTA H Sbjct: 123 K-LPMEAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAVHFA 181 Query: 187 VIKEKGPSCIHRLTFRPLR 205 I++ G HR +F P++ Sbjct: 182 AIEQHGVIEQHRKSFGPVK 200 >gi|323351561|ref|ZP_08087215.1| ribonuclease HII [Streptococcus sanguinis VMC66] gi|322122047|gb|EFX93773.1| ribonuclease HII [Streptococcus sanguinis VMC66] Length = 254 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 91/204 (44%), Positives = 130/204 (63%), Gaps = 9/204 (4%) Query: 11 HFELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 LE M+R EK ++ +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI Sbjct: 51 ELRLEQMLRYEKELYKTGFRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIP 110 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KK +E+Y+ + A+ + I ++ ID+ NI++AT A+ A+ L + P LID Sbjct: 111 KKKHQEIYQAVLDKALAVGIGLIDNEIIDQVNIYEATKLAMKDALSKLCLKPDYLLIDAM 170 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + ++P ++ +IKGD+ SLSIAAASI+AKVTRD+LM KK+P Y F + GY T + Sbjct: 171 KLDVEIPQES--IIKGDANSLSIAAASIVAKVTRDKLMTDYDKKFPGYDFSQNAGYGTMR 228 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H Q ++ G + IHR TF P++++ Sbjct: 229 HLQGLERNGVTPIHRKTFEPIKSM 252 >gi|223998909|ref|XP_002289127.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220974335|gb|EED92664.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 183 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 92/185 (49%), Positives = 120/185 (64%), Gaps = 7/185 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK-REELYEKITSSAII--S 82 V G+DE GRG LAGPVV AA I+ P NI G+ DSKKI+ ++ RE LYE++ SS I + Sbjct: 1 VVGVDEAGRGPLAGPVVAAAAIV-PTNIE-GVIDSKKITKEEDRERLYEELVSSPGIRYA 58 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS--ALIDGRSIPEDLPCQAFAVIKGD 140 ++ S Q ID+ NI +ATL+ + AV+ + + ALIDG IP+D+PC + ++ KGD Sbjct: 59 VAIVSAQRIDEINILQATLEGMRMAVQGVMDMDSYYFALIDGNKIPKDMPCSSESITKGD 118 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 SI AASIIAKVTRDRLM KYP+Y H GYPT H +++ G S IHR T Sbjct: 119 GREYSIGAASIIAKVTRDRLMHEYDAKYPEYNLKQHKGYPTVAHMSAVRKHGASLIHRRT 178 Query: 201 FRPLR 205 F PL+ Sbjct: 179 FAPLK 183 >gi|116514255|ref|YP_813161.1| ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275013|sp|Q049Z9|RNH2_LACDB RecName: Full=Ribonuclease HII; Short=RNase HII gi|116093570|gb|ABJ58723.1| RNase HII [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 256 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/193 (46%), Positives = 120/193 (62%), Gaps = 7/193 (3%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 EK+ W V G+DEVGRG LAGPVV AA+IL + +NDSKK+S +KR LY KI Sbjct: 59 EKDFWAKGQLVGGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLALYPKI 118 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A+ + + ++ ID+ NI++A A+ AVE L P L+D ++P DLP Sbjct: 119 LQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSTRPDVLLVDAMNVPVDLP--QL 176 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +IKGD+ S SIAAASI+AKV RD LM + YPDY FD + GY T H + +++ GP+ Sbjct: 177 ELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALRKYGPT 236 Query: 195 CIHRLTFRPLRNL 207 IHRLTF P+ + Sbjct: 237 PIHRLTFSPVSEM 249 >gi|237802463|ref|YP_002887657.1| ribonuclease HII [Chlamydia trachomatis B/Jali20/OT] gi|231273697|emb|CAX10475.1| ribonuclease HII [Chlamydia trachomatis B/Jali20/OT] Length = 217 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 91/201 (45%), Positives = 123/201 (61%), Gaps = 6/201 (2%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E+ FE +A+ E+ VAG+DE GRG LAGPVV A IL + GI+DSKK+ K+ Sbjct: 13 EKSIFENQAI--EQGYSRVAGVDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLIPKQ 70 Query: 68 REELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 R LYE + + + S + ID+ NI +AT +A+ A+ +LQ P L+DG + Sbjct: 71 RRYLYELLLEDPEVDCGVGVVSVERIDEINILEATKEAMVQAIASLQSTPDFLLVDGLFL 130 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P +P + +IKGD+ S+SIAAASIIAK RD LMR H +YP+YGFD H GY TA H Sbjct: 131 PHKVP--SLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHL 188 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 Q +K GP HR +F P++ Sbjct: 189 QALKHFGPCVYHRKSFSPVKE 209 >gi|81428604|ref|YP_395604.1| ribonuclease HII (RNase HII) [Lactobacillus sakei subsp. sakei 23K] gi|97182876|sp|Q38WY6|RNH2_LACSS RecName: Full=Ribonuclease HII; Short=RNase HII gi|78610246|emb|CAI55295.1| Ribonuclease HII (RNase HII) [Lactobacillus sakei subsp. sakei 23K] Length = 253 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 90/192 (46%), Positives = 126/192 (65%), Gaps = 7/192 (3%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 EK +WP VAGIDEVGRG LAGPVV AA+IL + + +NDSK++S K ++ELY +I Sbjct: 62 EKALWPDYPLVAGIDEVGRGPLAGPVVTAAVILPHDFDLWQVNDSKQLSFKLKQELYREI 121 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 + A+ +SI AS + ID NI+ AT A+ AV L P L+D ++P D+P + Sbjct: 122 MAQAVSVSIGIASPERIDTENIYHATELAMGEAVAGLDKQPDYLLVDAMTVPTDIPQEKL 181 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 IKGD+ S+SIA+ASI+AKV RD+LM ++YP Y +++GY TAKH + E G + Sbjct: 182 --IKGDARSISIASASIVAKVIRDQLMINYDQQYPGYDLANNMGYGTAKHLAGLAELGVT 239 Query: 195 CIHRLTFRPLRN 206 IHR +F P++N Sbjct: 240 PIHRRSFSPVQN 251 >gi|319776686|ref|YP_004139174.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Haemophilus influenzae F3047] gi|329124205|ref|ZP_08252752.1| ribonuclease HII [Haemophilus aegyptius ATCC 11116] gi|317451277|emb|CBY87511.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Haemophilus influenzae F3047] gi|327467630|gb|EGF13128.1| ribonuclease HII [Haemophilus aegyptius ATCC 11116] Length = 197 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 118/182 (64%), Gaps = 1/182 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I A+ ++ Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKALAWALG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI +A+L A+ AV++L++ P LIDG IP+DL A AV+KGDSI Sbjct: 71 RAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLIDGNKIPKDLDIPAQAVVKGDSIVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR +F P+ Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRRSFAPV 190 Query: 205 RN 206 + Sbjct: 191 KK 192 >gi|312127966|ref|YP_003992840.1| ribonuclease h [Caldicellulosiruptor hydrothermalis 108] gi|311777985|gb|ADQ07471.1| Ribonuclease H [Caldicellulosiruptor hydrothermalis 108] Length = 206 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 86/198 (43%), Positives = 129/198 (65%), Gaps = 4/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 +FE+E + + + G+DE GRG LAGPV AA+++D I G+ DSKK++ KKRE+ Sbjct: 9 YFEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREK 68 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+E+I +I S++ + ID+ NI+ AT A+ +A+ENL++ P L+DG IP +L Sbjct: 69 LFEEIIKESIAYSVAMVDSKIIDEININNATFLAMKNAIENLKIEPDIVLVDGYEIP-NL 127 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A+IKGD S SIA ASI+AKV+RDR + KYP Y F+ H GY T +H ++++ Sbjct: 128 GFNQRAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPLYKFEKHKGYGTKEHIEILQ 187 Query: 190 EKGPSCIHRLTFRPLRNL 207 + GP IHR++F L+N+ Sbjct: 188 KYGPCEIHRISF--LKNI 203 >gi|91784105|ref|YP_559311.1| ribonuclease HII [Burkholderia xenovorans LB400] gi|123358681|sp|Q13XD0|RNH2_BURXL RecName: Full=Ribonuclease HII; Short=RNase HII gi|91688059|gb|ABE31259.1| RNase HII [Burkholderia xenovorans LB400] Length = 248 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/183 (48%), Positives = 121/183 (66%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAII-SI 83 V G+DE GRG LAGPVV AA+I DP + G++DSK ++ KKR+ELY+KI A+ I Sbjct: 31 VCGVDEAGRGPLAGPVVAAAVIFDPAKPMIRGLDDSKVLTAKKRDELYDKIVDRALAYCI 90 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS + ID NI AT+ A+ AVE L V+P IDG P L ++ AVI GD++ Sbjct: 91 ASASVEEIDSLNILHATMLAMKRAVEGLSVVPTLVKIDGNRCPT-LSVRSEAVIGGDALV 149 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+ +P YGF++H GY T +H ++E GP HR +F P Sbjct: 150 KSISAASILAKVTRDRMLLELHQAHPVYGFNAHAGYGTPQHLAALREHGPCEHHRRSFAP 209 Query: 204 LRN 206 +R Sbjct: 210 VRE 212 >gi|156975492|ref|YP_001446399.1| ribonuclease HII [Vibrio harveyi ATCC BAA-1116] gi|166226667|sp|A7MY01|RNH2_VIBHB RecName: Full=Ribonuclease HII; Short=RNase HII gi|156527086|gb|ABU72172.1| hypothetical protein VIBHAR_03223 [Vibrio harveyi ATCC BAA-1116] Length = 212 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/182 (48%), Positives = 117/182 (64%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKR L +I A+ ++ Sbjct: 26 VAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEKALAWAVG 85 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S + ID+ NI +AT+ A+ A+ L+V P ALIDG PE LP + AV+KGD Sbjct: 86 RCSPEEIDELNILQATMVAMQRAIAGLKVQPDLALIDGNRCPE-LPMDSQAVVKGDLRVA 144 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKV RD+ M K+YP +GF H GYPT H + I++ G HR +F+P+ Sbjct: 145 EISAASIIAKVVRDQEMEELDKQYPQFGFAKHKGYPTKAHFEAIEQHGVISEHRKSFKPV 204 Query: 205 RN 206 + Sbjct: 205 KK 206 >gi|166154250|ref|YP_001654368.1| ribonuclease HII [Chlamydia trachomatis 434/Bu] gi|166155125|ref|YP_001653380.1| ribonuclease HII [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335499|ref|ZP_07223743.1| ribonuclease HII [Chlamydia trachomatis L2tet1] gi|238687401|sp|B0B9D6|RNH2_CHLT2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|238687453|sp|B0BB15|RNH2_CHLTB RecName: Full=Ribonuclease HII; Short=RNase HII gi|165930238|emb|CAP03723.1| ribonuclease HII [Chlamydia trachomatis 434/Bu] gi|165931113|emb|CAP06677.1| ribonuclease HII [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 217 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 90/201 (44%), Positives = 124/201 (61%), Gaps = 6/201 (2%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E+ FE +A+ E+ VAG+DE GRG LAGPVV A IL + GI+DSKK++ K+ Sbjct: 13 EKSIFENQAI--EQGYSQVAGVDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQ 70 Query: 68 REELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 R LYE + + + S + ID+ NI +AT +A+ A+ +L+ P L+DG + Sbjct: 71 RRYLYELLLEDPEVDCGVGVISVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLFL 130 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P +P + +IKGD+ S+SIAAASIIAK RD LMR H +YP+YGFD H GY TA H Sbjct: 131 PHKIP--SLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHL 188 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 Q +K GP HR +F P++ Sbjct: 189 QALKHFGPCVYHRKSFSPVKE 209 >gi|332075090|gb|EGI85561.1| ribonuclease HII [Streptococcus pneumoniae GA17545] Length = 260 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 92/204 (45%), Positives = 130/204 (63%), Gaps = 9/204 (4%) Query: 11 HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 + LE+M+ EK ++ +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI Sbjct: 51 NLRLESMLSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KK E+++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + DLP ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAK Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAK 228 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H + + + G + IHR +F P+++L Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252 >gi|222528967|ref|YP_002572849.1| ribonuclease HII [Caldicellulosiruptor bescii DSM 6725] gi|254807963|sp|B9MQX2|RNH2_ANATD RecName: Full=Ribonuclease HII; Short=RNase HII gi|222455814|gb|ACM60076.1| Ribonuclease H [Caldicellulosiruptor bescii DSM 6725] Length = 206 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 86/198 (43%), Positives = 129/198 (65%), Gaps = 4/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 +FE+E + + + G+DE GRG LAGPV AA+++D I G+ DSKK++ KKRE+ Sbjct: 9 YFEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREK 68 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+E+I +I S++ + ID+ NI+ AT A+ +A+ENL++ P L+DG IP +L Sbjct: 69 LFEEIIKESIAYSVAMVDSKVIDEININNATFLAMKNAIENLKIEPDIVLVDGYKIP-NL 127 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A+IKGD S SIA ASI+AKV+RDR + KYP Y F+ H GY T +H ++++ Sbjct: 128 GFNQRAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPLYKFEKHKGYGTKEHIEILQ 187 Query: 190 EKGPSCIHRLTFRPLRNL 207 + GP IHR++F L+N+ Sbjct: 188 KYGPCEIHRISF--LKNI 203 >gi|163801793|ref|ZP_02195690.1| ribonuclease HII [Vibrio sp. AND4] gi|159174301|gb|EDP59105.1| ribonuclease HII [Vibrio sp. AND4] Length = 212 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/182 (48%), Positives = 116/182 (63%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKR L +I A+ ++ Sbjct: 26 IAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEKALAWAVG 85 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S + ID+ NI +AT+ A+ A+E L+V P ALIDG PE LP + AV+KGD Sbjct: 86 RCSPEEIDELNILQATMVAMQRAIEGLKVQPDLALIDGNRCPE-LPMDSQAVVKGDLRVA 144 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKV RD+ M K YP +GF H GYPT H + I+ G HR +F+P+ Sbjct: 145 EISAASIIAKVVRDQEMEELDKHYPQFGFAQHKGYPTKAHFEAIERHGVISQHRKSFKPV 204 Query: 205 RN 206 + Sbjct: 205 KK 206 >gi|149006184|ref|ZP_01829896.1| ribonuclease HII [Streptococcus pneumoniae SP18-BS74] gi|225861097|ref|YP_002742606.1| ribonuclease HII [Streptococcus pneumoniae Taiwan19F-14] gi|298230996|ref|ZP_06964677.1| ribonuclease HII [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255436|ref|ZP_06979022.1| ribonuclease HII [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502841|ref|YP_003724781.1| ribonuclease H [Streptococcus pneumoniae TCH8431/19A] gi|307127247|ref|YP_003879278.1| ribonuclease HII [Streptococcus pneumoniae 670-6B] gi|254807994|sp|C1CRN4|RNH2_STRZT RecName: Full=Ribonuclease HII; Short=RNase HII gi|147761961|gb|EDK68923.1| ribonuclease HII [Streptococcus pneumoniae SP18-BS74] gi|225727970|gb|ACO23821.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae Taiwan19F-14] gi|298238436|gb|ADI69567.1| ribonuclease H [Streptococcus pneumoniae TCH8431/19A] gi|306484309|gb|ADM91178.1| ribonuclease HII [Streptococcus pneumoniae 670-6B] gi|327389302|gb|EGE87647.1| ribonuclease HII [Streptococcus pneumoniae GA04375] Length = 259 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 92/204 (45%), Positives = 130/204 (63%), Gaps = 9/204 (4%) Query: 11 HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 + LE+M+ EK ++ +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI Sbjct: 51 NLRLESMLSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KK E+++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + DLP ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAK Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAK 228 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H + + + G + IHR +F P+++L Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252 >gi|168486442|ref|ZP_02710950.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC1087-00] gi|168577174|ref|ZP_02722989.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae MLV-016] gi|182684110|ref|YP_001835857.1| ribonuclease HII [Streptococcus pneumoniae CGSP14] gi|194396938|ref|YP_002037768.1| ribonuclease HII [Streptococcus pneumoniae G54] gi|237650103|ref|ZP_04524355.1| ribonuclease HII [Streptococcus pneumoniae CCRI 1974] gi|237822305|ref|ZP_04598150.1| ribonuclease HII [Streptococcus pneumoniae CCRI 1974M2] gi|303255770|ref|ZP_07341812.1| ribonuclease HII [Streptococcus pneumoniae BS455] gi|303260563|ref|ZP_07346529.1| ribonuclease HII [Streptococcus pneumoniae SP-BS293] gi|303262697|ref|ZP_07348636.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS292] gi|303265232|ref|ZP_07351143.1| ribonuclease HII [Streptococcus pneumoniae BS397] gi|303266995|ref|ZP_07352869.1| ribonuclease HII [Streptococcus pneumoniae BS457] gi|303269263|ref|ZP_07355038.1| ribonuclease HII [Streptococcus pneumoniae BS458] gi|238690822|sp|B5E4Q2|RNH2_STRP4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|238691160|sp|B2IPW8|RNH2_STRPS RecName: Full=Ribonuclease HII; Short=RNase HII gi|182629444|gb|ACB90392.1| ribonuclease HII [Streptococcus pneumoniae CGSP14] gi|183570488|gb|EDT91016.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC1087-00] gi|183577232|gb|EDT97760.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae MLV-016] gi|194356605|gb|ACF55053.1| ribonuclease HII [Streptococcus pneumoniae G54] gi|301801974|emb|CBW34702.1| ribonuclease HII [Streptococcus pneumoniae INV200] gi|302597282|gb|EFL64386.1| ribonuclease HII [Streptococcus pneumoniae BS455] gi|302636129|gb|EFL66625.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS292] gi|302638276|gb|EFL68745.1| ribonuclease HII [Streptococcus pneumoniae SP-BS293] gi|302641220|gb|EFL71592.1| ribonuclease HII [Streptococcus pneumoniae BS458] gi|302643475|gb|EFL73748.1| ribonuclease HII [Streptococcus pneumoniae BS457] gi|302645203|gb|EFL75439.1| ribonuclease HII [Streptococcus pneumoniae BS397] gi|332200480|gb|EGJ14552.1| ribonuclease HII [Streptococcus pneumoniae GA41317] Length = 259 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 92/204 (45%), Positives = 130/204 (63%), Gaps = 9/204 (4%) Query: 11 HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 + LE+M+ EK ++ +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI Sbjct: 51 NLRLESMLSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KK E+++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + DLP ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAK Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAK 228 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H + + + G + IHR +F P+++L Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252 >gi|149013109|ref|ZP_01833955.1| ribonuclease HII [Streptococcus pneumoniae SP19-BS75] gi|147763054|gb|EDK69997.1| ribonuclease HII [Streptococcus pneumoniae SP19-BS75] Length = 259 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 92/204 (45%), Positives = 130/204 (63%), Gaps = 9/204 (4%) Query: 11 HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 + LE+M+ EK ++ +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI Sbjct: 51 NLRLESMLSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KK E+++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + DLP ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAK Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAK 228 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H + + + G + IHR +F P+++L Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252 >gi|126728136|ref|ZP_01743952.1| ribonuclease HII [Sagittula stellata E-37] gi|126711101|gb|EBA10151.1| ribonuclease HII [Sagittula stellata E-37] Length = 219 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 88/196 (44%), Positives = 128/196 (65%), Gaps = 5/196 (2%) Query: 17 MVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 M E+ +W VAG+DEVGRG LAGPVV AA++L+ +IP G+NDSKK++ K+RE L Sbjct: 23 MRFEEALWAQGVNRVAGVDEVGRGPLAGPVVAAAVVLNRASIPDGLNDSKKLTIKRREFL 82 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + SA +SI AS + ID+ NI +A+L A+ AVE L P L+DG P + C Sbjct: 83 APLLWQSAEVSIGQASVEEIDETNILQASLLAMRRAVEGLPKPPDHLLVDGNRAPGGISC 142 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A ++ GD S SIAAASI+AK+ RD +M+ A +YP YG++++ GYPT H+ ++ Sbjct: 143 DATCIVGGDGRSPSIAAASIVAKIWRDDVMKRAATQYPGYGWETNAGYPTKCHKSALRNL 202 Query: 192 GPSCIHRLTFRPLRNL 207 G + HR +F+P+R++ Sbjct: 203 GATPFHRRSFKPVRDI 218 >gi|15604747|ref|NP_219531.1| ribonuclease HII [Chlamydia trachomatis D/UW-3/CX] gi|255310830|ref|ZP_05353400.1| ribonuclease HII [Chlamydia trachomatis 6276] gi|255317130|ref|ZP_05358376.1| ribonuclease HII [Chlamydia trachomatis 6276s] gi|7227924|sp|O84032|RNH2_CHLTR RecName: Full=Ribonuclease HII; Short=RNase HII gi|3328419|gb|AAC67619.1| Ribonuclease HII [Chlamydia trachomatis D/UW-3/CX] gi|296436469|gb|ADH18639.1| ribonuclease HII [Chlamydia trachomatis G/11222] gi|297748160|gb|ADI50706.1| Ribonuclease HII [Chlamydia trachomatis D-EC] gi|297749040|gb|ADI51718.1| Ribonuclease HII [Chlamydia trachomatis D-LC] Length = 217 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 90/201 (44%), Positives = 124/201 (61%), Gaps = 6/201 (2%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E+ FE +A+ E+ VAG+DE GRG LAGPVV A IL + GI+DSKK++ K+ Sbjct: 13 EKSIFENQAI--EQGYSQVAGVDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQ 70 Query: 68 REELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 R LYE + + + S + ID+ NI +AT +A+ A+ +L+ P L+DG + Sbjct: 71 RRYLYELLLEDPEVDCGVGVISVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLFL 130 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P +P + +IKGD+ S+SIAAASIIAK RD LMR H +YP+YGFD H GY TA H Sbjct: 131 PHKVP--SLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHL 188 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 Q +K GP HR +F P++ Sbjct: 189 QALKHFGPCVYHRKSFSPVKE 209 >gi|295399793|ref|ZP_06809774.1| Ribonuclease H [Geobacillus thermoglucosidasius C56-YS93] gi|312111695|ref|YP_003990011.1| ribonuclease H [Geobacillus sp. Y4.1MC1] gi|294978196|gb|EFG53793.1| Ribonuclease H [Geobacillus thermoglucosidasius C56-YS93] gi|311216796|gb|ADP75400.1| Ribonuclease H [Geobacillus sp. Y4.1MC1] Length = 268 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 86/183 (46%), Positives = 121/183 (66%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AGIDE GRG LAGPVV AA+IL + G+NDSKK+S KRE L+ I S A+ I I Sbjct: 74 IAGIDEAGRGPLAGPVVAAAVILPKDAYIPGLNDSKKLSEAKRETLFHMIQSCAVSIGIG 133 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + ID+ NI++AT A+ AVE L P L+D ++P +P Q+ ++KGD+ S+ Sbjct: 134 VVTAAEIDEINIYEATKKAMIKAVEQLSPKPDYLLVDAMTLPIPMPQQS--IVKGDANSV 191 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAA+S+IAKVTRD M+ K+YP YGF+ ++GY TA+H + I+ G HRL+F P+ Sbjct: 192 SIAASSVIAKVTRDHFMKQLAKRYPQYGFEKNMGYGTAQHLEAIRTYGTIDEHRLSFSPI 251 Query: 205 RNL 207 + + Sbjct: 252 KEM 254 >gi|15615038|ref|NP_243341.1| ribonuclease H [Bacillus halodurans C-125] gi|10720371|sp|Q9Z9S0|RNH2_BACHD RecName: Full=Ribonuclease HII; Short=RNase HII gi|10175095|dbj|BAB06194.1| ribonuclease H [Bacillus halodurans C-125] Length = 263 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 87/199 (43%), Positives = 126/199 (63%), Gaps = 10/199 (5%) Query: 15 EAMVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKR 68 E + EK++W VAG+DEVGRG LAGPVV AA+IL P ++ G+ DSKK++ + R Sbjct: 60 EMLAYEKDLWAKGYEHVAGLDEVGRGPLAGPVVTAAVIL-PKDVQLPGLTDSKKLAKETR 118 Query: 69 EELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E Y++I A+ S++ ID+ NI++AT + A++ L V P + L+D ++P Sbjct: 119 ESFYDRIKEVALAWSVAIVPVTVIDEVNIYQATKQGMMSAIDQLSVNPDALLLDAMNLPL 178 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP Q+ IKGD SLSIAA+S++AKVTRDR M +YP+YGF+ HVGY T +H Sbjct: 179 SLPQQSL--IKGDQKSLSIAASSVLAKVTRDRYMADLANRYPEYGFERHVGYGTEEHLAA 236 Query: 188 IKEKGPSCIHRLTFRPLRN 206 + G + HR +FRP++ Sbjct: 237 LNAHGITPEHRRSFRPVQE 255 >gi|116629569|ref|YP_814741.1| ribonuclease HII [Lactobacillus gasseri ATCC 33323] gi|311110787|ref|ZP_07712184.1| ribonuclease HII [Lactobacillus gasseri MV-22] gi|122273493|sp|Q043R9|RNH2_LACGA RecName: Full=Ribonuclease HII; Short=RNase HII gi|116095151|gb|ABJ60303.1| RNase HII [Lactobacillus gasseri ATCC 33323] gi|311065941|gb|EFQ46281.1| ribonuclease HII [Lactobacillus gasseri MV-22] Length = 250 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/190 (46%), Positives = 126/190 (66%), Gaps = 7/190 (3%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 EK W VAG+DEVGRG LAGPVV AA+IL N +NDSKK+S KKR+EL+ KI Sbjct: 58 EKKFWQKSQLVAGVDEVGRGPLAGPVVTAAVILPHNFDLIDVNDSKKLSPKKRKELFPKI 117 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 + A+ +S+ A++ ID+ NI++A A+ HAV+ L+V P + L+D ++P ++P Sbjct: 118 LAKAVSVSVGLANNDVIDRINIYEADRLAMAHAVQGLKVKPDALLVDAMNVPLNIP--QV 175 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +I GD+ S SIAAASI+AKV RD LM + YP+Y F + GY T +H + +K+ GP+ Sbjct: 176 KLIHGDAKSNSIAAASIVAKVFRDNLMDAYGEVYPEYDFKHNAGYGTREHMEALKKYGPT 235 Query: 195 CIHRLTFRPL 204 IHR +F P+ Sbjct: 236 PIHRRSFAPV 245 >gi|332361192|gb|EGJ38996.1| ribonuclease HII [Streptococcus sanguinis SK1056] Length = 254 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 92/203 (45%), Positives = 129/203 (63%), Gaps = 9/203 (4%) Query: 12 FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 LE M+R EK ++ +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI Sbjct: 52 LRLEQMLRYEKELYQAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPK 111 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KK +E+Y+ + A+ + I + + ID+ NI++AT A+ A+ L + P LID Sbjct: 112 KKHQEIYQAVLDKALAVGIGLMNSEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMK 171 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + D+P ++ +IKGD+ SLSIAAASI+AKVTRD+LM K+YP Y F + GY T H Sbjct: 172 LDIDIPQES--IIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSH 229 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 Q ++ G + IHR TF P++++ Sbjct: 230 LQGLERHGVTPIHRKTFEPVKSM 252 >gi|261344722|ref|ZP_05972366.1| ribonuclease HII [Providencia rustigianii DSM 4541] gi|282567164|gb|EFB72699.1| ribonuclease HII [Providencia rustigianii DSM 4541] Length = 196 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 117/182 (64%), Gaps = 4/182 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK++ KKRE+L+++I A+ I Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLTEKKREKLFDEIKEKALCWCIG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L + P L+DG P+ +P QA V+KGDS+ Sbjct: 71 RAEPNEIDELNILHATMLAMQRAVAGLSITPEFVLVDGNRCPKLSMPSQA--VVKGDSLV 128 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RDR M K +P+YGF H GYPTA H + + + G + HR +F P Sbjct: 129 QEISAASILAKVVRDREMVELDKVFPEYGFAKHKGYPTAYHLEKLAQFGATEFHRKSFAP 188 Query: 204 LR 205 +R Sbjct: 189 VR 190 >gi|169633130|ref|YP_001706866.1| ribonuclease HII [Acinetobacter baumannii SDF] gi|169796619|ref|YP_001714412.1| ribonuclease HII [Acinetobacter baumannii AYE] gi|213156183|ref|YP_002318603.1| ribonuclease H [Acinetobacter baumannii AB0057] gi|215484081|ref|YP_002326306.1| Ribonuclease HII family protein [Acinetobacter baumannii AB307-0294] gi|301347289|ref|ZP_07228030.1| ribonuclease HII [Acinetobacter baumannii AB056] gi|301510211|ref|ZP_07235448.1| ribonuclease HII [Acinetobacter baumannii AB058] gi|301597198|ref|ZP_07242206.1| ribonuclease HII [Acinetobacter baumannii AB059] gi|332853559|ref|ZP_08434823.1| ribonuclease HII [Acinetobacter baumannii 6013150] gi|332868424|ref|ZP_08438155.1| ribonuclease HII [Acinetobacter baumannii 6013113] gi|169149546|emb|CAM87435.1| RNAse HII [Acinetobacter baumannii AYE] gi|169151922|emb|CAP00776.1| RNAse HII [Acinetobacter baumannii] gi|213055343|gb|ACJ40245.1| ribonuclease H [Acinetobacter baumannii AB0057] gi|213987268|gb|ACJ57567.1| Ribonuclease HII family protein [Acinetobacter baumannii AB307-0294] gi|332728592|gb|EGJ59964.1| ribonuclease HII [Acinetobacter baumannii 6013150] gi|332733423|gb|EGJ64606.1| ribonuclease HII [Acinetobacter baumannii 6013113] Length = 188 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 85/183 (46%), Positives = 120/183 (65%), Gaps = 5/183 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A+ SI+ Sbjct: 3 VAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWSIA 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--PCQAFAVIKGDSI 142 A+H ID+ NI +AT A+ AV+ L+ P+ ++DG IP+ + PC+A ++ GD+ Sbjct: 63 EATHAEIDELNILQATFLAMQRAVDGLKTQPQKVIVDGNQIPKGIVIPCEA--IVGGDAS 120 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M ++YP +GF H GYPT H + I G HR ++ Sbjct: 121 HAEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYA 180 Query: 203 PLR 205 P++ Sbjct: 181 PVK 183 >gi|170692156|ref|ZP_02883319.1| Ribonuclease H [Burkholderia graminis C4D1M] gi|170142586|gb|EDT10751.1| Ribonuclease H [Burkholderia graminis C4D1M] Length = 273 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 88/183 (48%), Positives = 121/183 (66%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAII-SI 83 V G+DE GRG LAGPVV AA+I DP+ + G++DSK ++ KKR+ELYEKI A+ I Sbjct: 48 VCGVDEAGRGPLAGPVVAAAVIFDPSKPMIRGLDDSKVLTAKKRDELYEKIVDRALAYCI 107 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SA+ + ID NI AT+ A+ AVE L V P +DG P L ++ AVI GD++ Sbjct: 108 ASATVEEIDTLNILHATMLAMKRAVEGLSVTPTLVKVDGNRCPM-LSVRSEAVIGGDALV 166 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+ +P YGF++H GY T +H ++E GP HR +F P Sbjct: 167 KSISAASILAKVTRDRMLLELHQTHPVYGFNAHAGYGTPQHLAALREHGPCEHHRRSFAP 226 Query: 204 LRN 206 +R Sbjct: 227 VRE 229 >gi|262279707|ref|ZP_06057492.1| ribonuclease H [Acinetobacter calcoaceticus RUH2202] gi|262260058|gb|EEY78791.1| ribonuclease H [Acinetobacter calcoaceticus RUH2202] Length = 188 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 85/183 (46%), Positives = 121/183 (66%), Gaps = 5/183 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A+ SI+ Sbjct: 3 IAGVDEAGRGPLVGSVVAAAVILDPNNPIVGLNDSKKLTEKKREKLFIEIQEKALAWSIA 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--PCQAFAVIKGDSI 142 A+H ID+ NI +AT A+ AV+ L+ P+ ++DG IP+ + PC+A +I GD+ Sbjct: 63 EATHGEIDELNILQATFLAMQRAVDGLKTQPQKVIVDGNQIPKGIIIPCEA--IIGGDAS 120 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M+ ++YP +GF H GYPT H + I G HR ++ Sbjct: 121 HAEISAASILAKVTRDRQMQELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYA 180 Query: 203 PLR 205 P++ Sbjct: 181 PVK 183 >gi|260549960|ref|ZP_05824175.1| ribonuclease HII family protein [Acinetobacter sp. RUH2624] gi|260406952|gb|EEX00430.1| ribonuclease HII family protein [Acinetobacter sp. RUH2624] Length = 188 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 85/183 (46%), Positives = 120/183 (65%), Gaps = 5/183 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A+ SI+ Sbjct: 3 VAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWSIA 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--PCQAFAVIKGDSI 142 A+H ID+ NI +AT A+ AV+ L+ P+ ++DG IP+ + PC+A ++ GD+ Sbjct: 63 EATHAEIDELNILQATFLAMQRAVDGLKTQPQKVIVDGNQIPKGIIIPCEA--IVGGDAS 120 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M ++YP +GF H GYPT H + I G HR ++ Sbjct: 121 HAEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYA 180 Query: 203 PLR 205 P++ Sbjct: 181 PVK 183 >gi|255348391|ref|ZP_05380398.1| ribonuclease HII [Chlamydia trachomatis 70] gi|255502932|ref|ZP_05381322.1| ribonuclease HII [Chlamydia trachomatis 70s] Length = 217 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 6/201 (2%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E+ FE +A+ E+ VAGIDE GRG LAGPVV A IL + GI+DSKK++ K+ Sbjct: 13 EKSIFENQAI--EQGYSQVAGIDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQ 70 Query: 68 REELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 R LYE + + + S + ID+ NI +AT +A+ A+ +L+ P L+DG + Sbjct: 71 RRYLYELLLEDPEVDCGVGVVSVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLFL 130 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P +P + +IKGD+ S+SIAAASIIAK RD LMR H +YP+YGFD H GY TA H Sbjct: 131 PHKIP--SLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHL 188 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 Q +K GP HR +F P++ Sbjct: 189 QALKHFGPCVHHRKSFSPVKE 209 >gi|324991142|gb|EGC23076.1| ribonuclease HII [Streptococcus sanguinis SK353] Length = 254 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 91/201 (45%), Positives = 130/201 (64%), Gaps = 9/201 (4%) Query: 14 LEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LE M+R EK ++ +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK Sbjct: 54 LEQMLRYEKELYQAGYRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKK 113 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 +E+Y+ + A+ + + +++ ID+ NI++AT A+ A+ L + P LID + Sbjct: 114 HQEIYQAVLDKALAVGVGLMNNEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKLD 173 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D+P ++ +IKGD+ SLSIAAASI+AKVTRD+LM K+YP Y F + GY T H Q Sbjct: 174 VDIPQES--IIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSHLQ 231 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 ++ G + IHR TF P++++ Sbjct: 232 GLERHGVTPIHRKTFEPVKSM 252 >gi|28899078|ref|NP_798683.1| ribonuclease HII [Vibrio parahaemolyticus RIMD 2210633] gi|260362393|ref|ZP_05775348.1| ribonuclease HII [Vibrio parahaemolyticus K5030] gi|260876840|ref|ZP_05889195.1| ribonuclease HII [Vibrio parahaemolyticus AN-5034] gi|260897272|ref|ZP_05905768.1| ribonuclease HII [Vibrio parahaemolyticus Peru-466] gi|31076897|sp|Q87MF1|RNH2_VIBPA RecName: Full=Ribonuclease HII; Short=RNase HII gi|28807302|dbj|BAC60567.1| ribonuclease HII [Vibrio parahaemolyticus RIMD 2210633] gi|308085359|gb|EFO35054.1| ribonuclease HII [Vibrio parahaemolyticus Peru-466] gi|308091461|gb|EFO41156.1| ribonuclease HII [Vibrio parahaemolyticus AN-5034] gi|308113983|gb|EFO51523.1| ribonuclease HII [Vibrio parahaemolyticus K5030] Length = 211 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 117/182 (64%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKR L +I A+ ++ Sbjct: 26 IAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEKALAWAVG 85 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S + ID+ NI +AT+ A+ A+ L+V P ALIDG PE LP + AV+KGD Sbjct: 86 RCSPEEIDELNILQATMVAMQRAITGLKVQPDLALIDGNRCPE-LPMDSQAVVKGDLRVA 144 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKV RD+ M K+YP +GF H GYPT H + I++ G HR +F+P+ Sbjct: 145 EISAASIIAKVVRDQEMEELDKQYPQFGFAKHKGYPTKAHFEAIEQHGVISEHRKSFKPV 204 Query: 205 RN 206 + Sbjct: 205 KK 206 >gi|260588681|ref|ZP_05854594.1| ribonuclease HII [Blautia hansenii DSM 20583] gi|260541156|gb|EEX21725.1| ribonuclease HII [Blautia hansenii DSM 20583] Length = 256 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 87/177 (49%), Positives = 120/177 (67%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG AGPVV A+IL P+ +NDSK++S K RE+LY++I A+ +++ Sbjct: 71 ICGIDEVGRGPFAGPVVAGAVILPPDCEILYVNDSKQLSEKMREQLYDEIMEKAVSVAVG 130 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS Q ID+ NI +AT +A+ AV L V P+ L D +IP+ + +IKGD+ S+ Sbjct: 131 YASPQRIDEINILQATYEAMREAVSKLDVTPQILLNDAVTIPQ-ITIPQVPIIKGDAKSI 189 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASI+AKVTRDRLMR K P+YGF S+ GY + +H + IK+ GP+ IHR +F Sbjct: 190 SIAAASIVAKVTRDRLMREYDKIMPEYGFASNKGYGSKEHIEAIKKYGPTPIHRRSF 246 >gi|262276513|ref|ZP_06054322.1| ribonuclease HII [Grimontia hollisae CIP 101886] gi|262220321|gb|EEY71637.1| ribonuclease HII [Grimontia hollisae CIP 101886] Length = 200 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 86/182 (47%), Positives = 112/182 (61%), Gaps = 1/182 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK++ KKR L+E+I A+ S+ Sbjct: 14 IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTDKKRAVLFEEIKEKALAWSLG 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L + P LIDG +P+ L A AV+KGD Sbjct: 74 RAEPEEIDELNILSATMLAMERAVAGLNIKPDFVLIDGNRVPQGLTVPAQAVVKGDLRVA 133 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RDR M KYP YGF H GYPT H + + G HR +F+P+ Sbjct: 134 EISAASILAKVVRDREMEALDAKYPQYGFAKHKGYPTKVHFEALATHGAILEHRKSFKPV 193 Query: 205 RN 206 + Sbjct: 194 KK 195 >gi|254420769|ref|ZP_05034493.1| ribonuclease HII [Brevundimonas sp. BAL3] gi|196186946|gb|EDX81922.1| ribonuclease HII [Brevundimonas sp. BAL3] Length = 213 Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 89/199 (44%), Positives = 121/199 (60%), Gaps = 2/199 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P LE ++ ++ PV G+DE GRG AGPV AA+IL+P+++P GI+DSK ++ K+R Sbjct: 12 PTLALETVLIQRVNGPVCGVDEAGRGPWAGPVSAAAVILNPDDLPPGIDDSKALTEKRRA 71 Query: 70 ELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L +I + A+ + AS + I+ NI AT A+ AVE L V P +AL+DG + Sbjct: 72 ALEPEIKARAVAWGVGFASVEEIEDLNILHATGLAMCRAVEQLAVQPAAALVDG-NYRFR 130 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LPC+ V+ GD +SLSIAAASI+AK RDRLM +YP YGF H GY HQ + Sbjct: 131 LPCEIQTVVGGDGLSLSIAAASILAKTARDRLMIDLDAQYPGYGFARHKGYNAPIHQAAL 190 Query: 189 KEKGPSCIHRLTFRPLRNL 207 K GP HR + P+R L Sbjct: 191 KTLGPCPAHRRGWSPIRAL 209 >gi|325696515|gb|EGD38405.1| ribonuclease HII [Streptococcus sanguinis SK160] Length = 254 Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 90/203 (44%), Positives = 130/203 (64%), Gaps = 9/203 (4%) Query: 12 FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 LE M+R EK ++ +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI Sbjct: 52 LRLEQMLRYEKELYKADYQAIAGIDEVGRGPLAGPVVAAAVILPPECKIKGLNDSKKIPK 111 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KK +++Y+ + A+ + + +++ ID+ NI++AT A+ A+ L + P LID Sbjct: 112 KKHQDIYQAVLDKALAVGVGLMNNEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMK 171 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + D+P ++ +IKGD+ SLSIAAASI+AKVTRD+LM KK+P Y F + GY T H Sbjct: 172 LDVDIPQES--IIKGDANSLSIAAASIVAKVTRDKLMADYDKKFPGYDFAKNAGYGTRSH 229 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 Q ++ G + IHR TF P++++ Sbjct: 230 LQGLERSGVTPIHRKTFEPIKSM 252 >gi|325694493|gb|EGD36402.1| ribonuclease HII [Streptococcus sanguinis SK150] Length = 254 Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 90/201 (44%), Positives = 130/201 (64%), Gaps = 9/201 (4%) Query: 14 LEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LE M+R EK ++ +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK Sbjct: 54 LEQMLRYEKELYQAGYRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKK 113 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 +E+Y+++ A+ + + + IDK NI++AT A+ A+ L++ P LID + Sbjct: 114 HDEIYQEVMDKALAVGVGLMDSKIIDKVNIYQATKLAMKDALSRLKIEPDYLLIDAMKLD 173 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 ++P ++ +IKGD+ SLSIAAASI+AKVTRD+LM K++P Y F + GY T H Q Sbjct: 174 VEIPQES--IIKGDANSLSIAAASIVAKVTRDKLMADYDKEFPGYDFSQNAGYGTKSHLQ 231 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 ++ G + IHR TF P++++ Sbjct: 232 GLERNGVTPIHRKTFEPVKSM 252 >gi|153839485|ref|ZP_01992152.1| ribonuclease HII [Vibrio parahaemolyticus AQ3810] gi|149746990|gb|EDM57978.1| ribonuclease HII [Vibrio parahaemolyticus AQ3810] Length = 211 Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 117/182 (64%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKR L +I A+ ++ Sbjct: 26 IAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEKALAWAVG 85 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S + ID+ NI +AT+ A+ A+ L+V P ALIDG PE LP + AV+KGD Sbjct: 86 RCSPEEIDELNILQATMVAMQRAIAGLKVQPDLALIDGNRCPE-LPMDSQAVVKGDLRVA 144 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKV RD+ M K+YP +GF H GYPT H + I++ G HR +F+P+ Sbjct: 145 EISAASIIAKVVRDQEMEELDKQYPQFGFAKHKGYPTKAHFEAIEQHGVISEHRKSFKPV 204 Query: 205 RN 206 + Sbjct: 205 KK 206 >gi|332076292|gb|EGI86758.1| ribonuclease HII [Streptococcus pneumoniae GA41301] Length = 259 Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 92/204 (45%), Positives = 130/204 (63%), Gaps = 9/204 (4%) Query: 11 HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 + LE+M+ EK ++ +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI Sbjct: 51 NLRLESMLSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KK E+++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID Sbjct: 111 KKKHLEIFQVVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + DLP ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAK Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAK 228 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H + + + G + IHR +F P+++L Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252 >gi|331081970|ref|ZP_08331098.1| hypothetical protein HMPREF0992_00022 [Lachnospiraceae bacterium 6_1_63FAA] gi|330405565|gb|EGG85095.1| hypothetical protein HMPREF0992_00022 [Lachnospiraceae bacterium 6_1_63FAA] Length = 256 Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 87/177 (49%), Positives = 120/177 (67%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG AGPVV A+IL P+ +NDSK++S K RE+LY++I A+ +++ Sbjct: 71 ICGIDEVGRGPFAGPVVAGAVILPPDCEILYVNDSKQLSEKMREQLYDEIMEKAVSVAVG 130 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS Q ID+ NI +AT +A+ AV L V P+ L D +IP+ + +IKGD+ S+ Sbjct: 131 YASPQRIDEINILQATYEAMREAVSKLAVTPQILLNDAVTIPQ-ITIPQVPIIKGDAKSI 189 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASI+AKVTRDRLMR K P+YGF S+ GY + +H + IK+ GP+ IHR +F Sbjct: 190 SIAAASIVAKVTRDRLMREYDKIMPEYGFASNKGYGSKEHIEAIKKYGPTPIHRRSF 246 >gi|254363172|ref|ZP_04979221.1| ribonuclease H [Mannheimia haemolytica PHL213] gi|261493949|ref|ZP_05990457.1| ribonuclease H [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494766|ref|ZP_05991245.1| ribonuclease H [Mannheimia haemolytica serotype A2 str. OVINE] gi|153095066|gb|EDN75617.1| ribonuclease H [Mannheimia haemolytica PHL213] gi|261309583|gb|EEY10807.1| ribonuclease H [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310381|gb|EEY11576.1| ribonuclease H [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 198 Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 89/183 (48%), Positives = 117/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR+ L E+I + A+ S+ Sbjct: 12 IAGVDEVGRGPLVGAVVTAAVILDPNNPIQGLTDSKKLSEKKRQALAEEIKAKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P+ LP A AV+KGDS+ Sbjct: 72 RAEPTEIDELNILNATMLAMQRAVAGLHIQPDFVLIDGNRPPK-LPMPAQAVVKGDSLVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKV RD+ M +++P YGF H GYPT H + + E G + HR +F P+ Sbjct: 131 EISAASIIAKVARDQEMDELDQQFPQYGFAQHKGYPTKLHFEKLAEFGATPYHRKSFAPV 190 Query: 205 RNL 207 R + Sbjct: 191 RKV 193 >gi|15901021|ref|NP_345625.1| ribonuclease HII [Streptococcus pneumoniae TIGR4] gi|111658304|ref|ZP_01408994.1| hypothetical protein SpneT_02000533 [Streptococcus pneumoniae TIGR4] gi|32171703|sp|Q97QP5|RNH2_STRPN RecName: Full=Ribonuclease HII; Short=RNase HII gi|14972634|gb|AAK75265.1| ribonuclease HII [Streptococcus pneumoniae TIGR4] Length = 259 Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 91/204 (44%), Positives = 130/204 (63%), Gaps = 9/204 (4%) Query: 11 HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 + LE+M+ EK ++ +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI Sbjct: 51 NLRLESMLSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILSKNCKIKGLNDSKKIP 110 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KK E+++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + DLP ++IKGD+ SLSIAAASI+AKVTRD L++ +++P Y F ++ GY TAK Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELLKEYDQQFPGYDFATNAGYGTAK 228 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H + + + G + IHR +F P+++L Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252 >gi|301169801|emb|CBW29405.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Haemophilus influenzae 10810] Length = 197 Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 118/182 (64%), Gaps = 1/182 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I A+ ++ Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKALAWALG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+KGDSI Sbjct: 71 RAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKGDSIVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR +F P+ Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAELGALPQHRRSFAPV 190 Query: 205 RN 206 + Sbjct: 191 KK 192 >gi|221233322|ref|YP_002515758.1| ribonuclease HII [Caulobacter crescentus NA1000] gi|239977582|sp|B8GZ34|RNH2_CAUCN RecName: Full=Ribonuclease HII; Short=RNase HII gi|239977583|sp|P0CAW4|RNH2_CAUCR RecName: Full=Ribonuclease HII; Short=RNase HII gi|220962494|gb|ACL93850.1| ribonuclease HII [Caulobacter crescentus NA1000] Length = 211 Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 95/201 (47%), Positives = 118/201 (58%), Gaps = 5/201 (2%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 +P P LE + PV G+DE GRG AGPV A+ILDP+ IP G+NDSKK+S Sbjct: 1 MPPGPDMTLELACGQA---PVCGVDEAGRGPWAGPVSAGAVILDPDRIPKGLNDSKKLSA 57 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 K R L E+I AI + AS + I + NI A A+ AVE L V P AL+DG + Sbjct: 58 KARAALEEEIKDVAISWCVGLASIEEIAQLNILHAAGLAMRRAVEGLAVTPAFALVDG-N 116 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 LPC VIKGDS+S SIAAASI+AK RDR+M A YP YGF H GY H Sbjct: 117 YAFKLPCPVKTVIKGDSLSCSIAAASILAKEARDRIMIEADALYPGYGFAGHKGYHAKVH 176 Query: 185 QQVIKEKGPSCIHRLTFRPLR 205 + ++ GPS IHRL + P++ Sbjct: 177 VEGLRRLGPSPIHRLGWAPVK 197 >gi|160880532|ref|YP_001559500.1| ribonuclease H [Clostridium phytofermentans ISDg] gi|189043586|sp|A9KLL7|RNH2_CLOPH RecName: Full=Ribonuclease HII; Short=RNase HII gi|160429198|gb|ABX42761.1| Ribonuclease H [Clostridium phytofermentans ISDg] Length = 254 Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 92/184 (50%), Positives = 124/184 (67%), Gaps = 4/184 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG LAGPV+ A+IL + INDSK++S KKRE LY++I AI + I Sbjct: 72 ICGIDEVGRGPLAGPVIACAVILPKDCEILYINDSKQLSEKKREALYDEIMEKAISVGIG 131 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SASH I++ NI +AT +A+ A+ L V+P L D +IP+ + Q +IKGD+ S+ Sbjct: 132 SASHARIEEINILQATYEAMRGAINKLGVVPELLLNDAVTIPKVVIPQV-PIIKGDAKSI 190 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASI+AKVTRDRLM +P YGF S+ GY +A H + +KE GPS IHR +F + Sbjct: 191 SIAAASIVAKVTRDRLMVEYDTVFPGYGFASNKGYGSADHIKALKELGPSPIHRASF--I 248 Query: 205 RNLS 208 +NL+ Sbjct: 249 KNLT 252 >gi|77462008|ref|YP_351512.1| ribonuclease HII [Rhodobacter sphaeroides 2.4.1] gi|221640959|ref|YP_002527221.1| ribonuclease HII [Rhodobacter sphaeroides KD131] gi|332559935|ref|ZP_08414257.1| ribonuclease HII [Rhodobacter sphaeroides WS8N] gi|97189247|sp|Q3J6H3|RNH2_RHOS4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807985|sp|B9KRA6|RNH2_RHOSK RecName: Full=Ribonuclease HII; Short=RNase HII gi|77386426|gb|ABA77611.1| ribonuclease HII [Rhodobacter sphaeroides 2.4.1] gi|221161740|gb|ACM02720.1| Ribonuclease HII [Rhodobacter sphaeroides KD131] gi|332277647|gb|EGJ22962.1| ribonuclease HII [Rhodobacter sphaeroides WS8N] Length = 212 Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 86/198 (43%), Positives = 125/198 (63%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + E + V G+DEVGRG LAGPV AA+ L P IP G+NDSKK++ +RE Sbjct: 6 PDWTHETAALAEGFTCVVGVDEVGRGPLAGPVTAAAVRLFPGRIPEGLNDSKKLTAPRRE 65 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L +I + A +SI+ AS + ID+ NI +A+ A+ A+ L P ALIDG +P+ L Sbjct: 66 MLAAEIHTVAEVSIAHASVEEIDRLNILQASHLAMGRALAGLPSRPDFALIDGHMVPKGL 125 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + A++KGD++ LSIAAASI+AKV RDR+M +++P YG+ ++ GY T H Q + Sbjct: 126 GHRCRAIVKGDALCLSIAAASIVAKVARDRIMVDLEQQHPGYGWRTNAGYGTKDHLQALL 185 Query: 190 EKGPSCIHRLTFRPLRNL 207 GP+ HR +F+P+ N+ Sbjct: 186 NLGPTPHHRRSFKPVHNI 203 >gi|324992892|gb|EGC24812.1| ribonuclease HII [Streptococcus sanguinis SK405] Length = 254 Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 91/203 (44%), Positives = 129/203 (63%), Gaps = 9/203 (4%) Query: 12 FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 LE M+R EK ++ +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI Sbjct: 52 LRLEQMLRYEKELYQAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPK 111 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KK +E+Y+ + + A+ + + ++ ID+ NI++AT A+ A+ L P LID Sbjct: 112 KKHQEIYQTVMNKALAVGVGLIDNEIIDQVNIYEATKLAMKEALSKLSFKPDYLLIDAMK 171 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + D+P ++ +IKGD+ SLSIAAASI+AKVTRD+LM K+YP Y F + GY T H Sbjct: 172 LDIDIPQES--IIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSH 229 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 Q ++ G + IHR TF P++++ Sbjct: 230 LQGLERHGVTPIHRKTFEPVKSM 252 >gi|293608749|ref|ZP_06691052.1| ribonuclease HII [Acinetobacter sp. SH024] gi|292829322|gb|EFF87684.1| ribonuclease HII [Acinetobacter sp. SH024] Length = 189 Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 85/186 (45%), Positives = 121/186 (65%), Gaps = 5/186 (2%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII- 81 M +AG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A+ Sbjct: 1 MMFIAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAW 60 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--PCQAFAVIKG 139 SI+ A+H ID+ NI +AT A+ AV+ L+ P+ ++DG IP+ + PC+A ++ G Sbjct: 61 SIAEATHAEIDELNILQATFLAMQRAVDGLKTQPQKVIVDGNQIPKGIIIPCEA--IVGG 118 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D+ I+AASI+AKVTRDR M ++YP +GF H GYPT H + I G HR Sbjct: 119 DASHAEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAVHGVIDQHRR 178 Query: 200 TFRPLR 205 ++ P++ Sbjct: 179 SYAPVK 184 >gi|227432240|ref|ZP_03914236.1| ribonuclease HII [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352013|gb|EEJ42243.1| ribonuclease HII [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 253 Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 99/206 (48%), Positives = 128/206 (62%), Gaps = 9/206 (4%) Query: 8 ERPHFELEAMVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62 +R HF L E+ W +AG+DEVGRG LAGPVV AAIIL + + DSK+ Sbjct: 50 KREHF-LSRFDIERQYWMQGYDLIAGVDEVGRGPLAGPVVAAAIILPHDFDVLDVIDSKQ 108 Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 +S KKR+ELY+KI AI I + ID+ NI++A A+ AV L IP + LID Sbjct: 109 LSAKKRDELYDKIIEKAISIGVGRVEASIIDEINIYEAARVAMTEAVNQLAPIPEALLID 168 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + DLP Q F +IKGD+ S SI AASIIAKVTRDRLM KYP YGF+ + GY T Sbjct: 169 AMRLDLDLP-QEF-LIKGDARSNSIGAASIIAKVTRDRLMASYGLKYPGYGFEKNAGYGT 226 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207 +H + IK+ G + IHR TF P++++ Sbjct: 227 KEHLEGIKKIGITPIHRKTFAPIKDI 252 >gi|332976611|gb|EGK13452.1| ribonuclease HII [Desmospora sp. 8437] Length = 264 Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 88/196 (44%), Positives = 120/196 (61%), Gaps = 2/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + LE R + +AG+DE GRG LAGPVV AA+IL G+NDSKK+S ++RE L Sbjct: 61 WRLEREYRRQGYQAIAGVDEAGRGPLAGPVVAAAVILPLGFDATGLNDSKKLSPEERESL 120 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +I A+ + I A H+YID+HNI +AT +A+ AV +L L+D +PE L Sbjct: 121 RVRIERDAVAVGIGVADHRYIDEHNILQATYEAMRRAVADLSPAADCLLLDAVEVPE-LF 179 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++KGD++S SIAAAS+IAK RDR M A KKYP YGF+ ++GY T H ++ Sbjct: 180 LPQHPIVKGDALSHSIAAASVIAKTFRDRCMTAAGKKYPQYGFEKNMGYGTPDHLAALER 239 Query: 191 KGPSCIHRLTFRPLRN 206 G IHR +F P+R Sbjct: 240 WGTCPIHRKSFAPVRE 255 >gi|126460898|ref|YP_001042012.1| ribonuclease HII [Rhodobacter sphaeroides ATCC 17029] gi|166226644|sp|A3PFX4|RNH2_RHOS1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|126102562|gb|ABN75240.1| Ribonuclease H [Rhodobacter sphaeroides ATCC 17029] Length = 212 Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 86/198 (43%), Positives = 125/198 (63%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + E + V G+DEVGRG LAGPV AA+ L P IP G+NDSKK++ +RE Sbjct: 6 PDWTHETAALAEGFTCVVGVDEVGRGPLAGPVTAAAVRLFPGRIPEGLNDSKKLTALRRE 65 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L +I + A +SI+ AS + ID+ NI +A+ A+ A+ L P ALIDG +P+ L Sbjct: 66 MLAAEIHTVAEVSIAHASVEEIDRLNILQASHLAMGRALAGLPSRPDFALIDGHMVPKGL 125 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + A++KGD++ LSIAAASI+AKV RDR+M +++P YG+ ++ GY T H Q + Sbjct: 126 GHRCRAIVKGDALCLSIAAASIVAKVARDRIMVDLEQQHPGYGWRTNAGYGTKDHLQALL 185 Query: 190 EKGPSCIHRLTFRPLRNL 207 GP+ HR +F+P+ N+ Sbjct: 186 NLGPTPHHRRSFKPVHNI 203 >gi|121726559|ref|ZP_01679808.1| ribonuclease HII [Vibrio cholerae V52] gi|262189887|ref|ZP_06048211.1| ribonuclease HII [Vibrio cholerae CT 5369-93] gi|121631012|gb|EAX63391.1| ribonuclease HII [Vibrio cholerae V52] gi|262034231|gb|EEY52647.1| ribonuclease HII [Vibrio cholerae CT 5369-93] Length = 206 Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 93/200 (46%), Positives = 123/200 (61%), Gaps = 7/200 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE+ A +AG+DEVGRG L G VV AA+ILDP+ G+NDSKK+S KK Sbjct: 8 ELPPFEIPA-----GYALIAGVDEVGRGPLVGDVVTAAVILDPHRPIMGLNDSKKLSEKK 62 Query: 68 REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L+ +I A+ ++ S Q ID+ NI +AT+ A+ AV L++ P LIDG IP Sbjct: 63 RLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNKIP 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + LP +A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 123 K-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAHFA 181 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 182 AIEQHGVIEQHRKSFGPVKR 201 >gi|327489685|gb|EGF21476.1| ribonuclease HII [Streptococcus sanguinis SK1058] Length = 254 Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 92/201 (45%), Positives = 129/201 (64%), Gaps = 9/201 (4%) Query: 14 LEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LE M+R EK ++ +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK Sbjct: 54 LEQMLRYEKELYQAGYRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKK 113 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 +E+Y+ + A+ + I ++ ID+ NI++AT A+ A+ L + P LID + Sbjct: 114 HQEIYQAVLDKALAVGIGLIDNEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKLD 173 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D+P ++ +IKGD+ SLSIAAASI+AKVTRD+LM K+YP Y F + GY T H Q Sbjct: 174 IDIPQES--IIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSHLQ 231 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 ++ G + IHR TF P++++ Sbjct: 232 GLERHGVTPIHRKTFEPVKSM 252 >gi|301794258|emb|CBW36679.1| ribonuclease HII [Streptococcus pneumoniae INV104] gi|332203012|gb|EGJ17080.1| ribonuclease HII [Streptococcus pneumoniae GA47901] Length = 259 Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 92/204 (45%), Positives = 130/204 (63%), Gaps = 9/204 (4%) Query: 11 HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 + LE+M+ EK ++ +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI Sbjct: 51 NLRLESMLSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KK E+++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID Sbjct: 111 KKKHLEIFQVVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + DLP ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAK Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAK 228 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H + + + G + IHR +F P+++L Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252 >gi|307706602|ref|ZP_07643409.1| ribonuclease HII [Streptococcus mitis SK321] gi|307618057|gb|EFN97217.1| ribonuclease HII [Streptococcus mitis SK321] Length = 259 Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 91/204 (44%), Positives = 129/204 (63%), Gaps = 9/204 (4%) Query: 11 HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 LE+M+ EK ++ +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI Sbjct: 51 ELRLESMLSYEKELYKQGLTLIAGVDEVGRGPLAGPVVAAAVILPKNCKIRGLNDSKKIP 110 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KK E+++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIMDNQVIDQVNIYEATKLAMQEAISQLSPQPDHLLIDAM 170 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + DLP ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAK Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFTANAGYGTAK 228 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H + + + G + IHR +F P+++L Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252 >gi|149907539|ref|ZP_01896286.1| ribonuclease HII [Moritella sp. PE36] gi|149809209|gb|EDM69138.1| ribonuclease HII [Moritella sp. PE36] Length = 199 Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 87/181 (48%), Positives = 115/181 (63%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR+ L+ +I A+ SI Sbjct: 13 VAGVDEVGRGPLVGDVVTAAVILDPNNPIVGLTDSKKLSDKKRQLLFPEIKEKALAWSIG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S ID+ NI +AT+ A+ AV L + P IDG P LP A A++KGD Sbjct: 73 RCSPSEIDELNILQATMVAMQRAVAGLTLQPEHVFIDGNRCPA-LPMPAEAIVKGDLRVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD M H++YP+YGF H GYPT H + + E GP+ +R +F+P+ Sbjct: 132 EISAASILAKVVRDAEMDELHERYPEYGFAQHKGYPTKAHMEKLAELGPTEEYRKSFKPV 191 Query: 205 R 205 + Sbjct: 192 Q 192 >gi|270292737|ref|ZP_06198948.1| ribonuclease HII [Streptococcus sp. M143] gi|270278716|gb|EFA24562.1| ribonuclease HII [Streptococcus sp. M143] Length = 259 Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 88/194 (45%), Positives = 124/194 (63%), Gaps = 3/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + ++ M +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI KK E+++ Sbjct: 61 EKELYKQGMTFIAGVDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEIFQA 120 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 + A+ I + +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 121 VQDQALAIGVGIMDNQIIDQVNIYEATKLAMKEAISQLSPQPEHLLIDAMQL--DLPISQ 178 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 A+IKGD+ SLSIAAASI+AKVTRD +M+ +YP Y F ++ GY TAKH + +++ G Sbjct: 179 TAIIKGDANSLSIAAASIVAKVTRDNIMKDYDNQYPGYDFAANAGYGTAKHLEGLEKLGV 238 Query: 194 SCIHRLTFRPLRNL 207 + IHR +F P++ L Sbjct: 239 TPIHRTSFEPVKTL 252 >gi|183597582|ref|ZP_02959075.1| hypothetical protein PROSTU_00865 [Providencia stuartii ATCC 25827] gi|188023079|gb|EDU61119.1| hypothetical protein PROSTU_00865 [Providencia stuartii ATCC 25827] Length = 197 Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 115/182 (63%), Gaps = 4/182 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK++ KKRE+L+ +I A+ I Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPKNPIIGLTDSKKLTEKKREKLFVEIQEKALCWCIG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L + P L+DG P +P QA VIKGDS+ Sbjct: 71 RAEPEEIDEINILHATMLAMQRAVAGLSITPDFVLVDGNRCPTLSMPSQA--VIKGDSLV 128 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RDR M K YP+YGF H GYPTA H + + + G + HR +F P Sbjct: 129 QEISAASILAKVVRDREMVELDKAYPEYGFAKHKGYPTAYHLEKLAQFGATKFHRKSFAP 188 Query: 204 LR 205 +R Sbjct: 189 VR 190 >gi|254448807|ref|ZP_05062264.1| ribonuclease HII [gamma proteobacterium HTCC5015] gi|198261648|gb|EDY85936.1| ribonuclease HII [gamma proteobacterium HTCC5015] Length = 202 Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 93/182 (51%), Positives = 119/182 (65%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG DE GRG LAG VV AA++LDP G+NDSKK+S K+RE LYE+I + A I+ Sbjct: 17 IAGADEAGRGPLAGSVVAAAVVLDPKRPIPGLNDSKKLSEKRREALYEEICAEASDWCIA 76 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID NI A++ A+ A+E LQ P ALIDG P D+ A A++KGD Sbjct: 77 RASVEEIDDLNILHASMLAMKRAIEGLQHPPEQALIDGNRCP-DVSMPAQAIVKGDGRVA 135 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I AASI+AKV RDR M + H+ YPDYGFD H GYPTA HQ+ +K GP+ HR +F P+ Sbjct: 136 CIGAASILAKVARDRDMLLLHEAYPDYGFDRHKGYPTALHQERLKALGPTEHHRRSFGPV 195 Query: 205 RN 206 + Sbjct: 196 KK 197 >gi|241761783|ref|ZP_04759869.1| Ribonuclease H [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373697|gb|EER63257.1| Ribonuclease H [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 215 Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 87/186 (46%), Positives = 123/186 (66%), Gaps = 5/186 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 V G+DEVGRG LAGPV+ A+ L +IP GINDSKK++ ++R L + + + A + Sbjct: 26 VFGVDEVGRGPLAGPVMAGAVYLHREHIPEGINDSKKLTARRRHLLSDMLHNQADYATGM 85 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENL-QVI---PRSALIDGRSIPEDLPCQAFAVIKGDS 141 A+ ID+ NI +A+L A+ AVE L Q I P L+DGR IP D P + +IKGDS Sbjct: 86 ANVHEIDRINIRQASLLAMKRAVEALIQKIGREPDCILVDGRDIP-DWPWPSLPIIKGDS 144 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +SLSIAAASI+AKV RD +M A ++YP YG++ ++GYPT +H++ I+ P+ HR +F Sbjct: 145 LSLSIAAASIVAKVERDEIMVKASQEYPGYGWEHNMGYPTKEHREAIQRLKPTKFHRRSF 204 Query: 202 RPLRNL 207 P+R Sbjct: 205 SPIRQF 210 >gi|146297153|ref|YP_001180924.1| ribonuclease H [Caldicellulosiruptor saccharolyticus DSM 8903] gi|189043571|sp|A4XLE8|RNH2_CALS8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|145410729|gb|ABP67733.1| RNase HII [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 205 Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 89/198 (44%), Positives = 128/198 (64%), Gaps = 4/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 +FELE + ++ + G+DE GRG LAGPV AA+I+D I G+ DSKK++ KKRE+ Sbjct: 9 YFELEENLLKEGYRFICGVDEAGRGPLAGPVFAAAVIMDREIIIEGVRDSKKLTPKKREK 68 Query: 71 LYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+E+I +I S++ ++ ID+ NI+ AT A+ +A+E L+++P L+DG IP DL Sbjct: 69 LFEEIVKESITYSVAMVDNKTIDEININNATFLAMKNAIEALELVPDIVLVDGYEIP-DL 127 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A+IKGD S SIA ASI+AKV+RDR + YP Y F+ H GY T +H ++I Sbjct: 128 NLPQKALIKGDRKSYSIACASILAKVSRDRFITQISSLYPVYKFEKHKGYGTKEHIRLIL 187 Query: 190 EKGPSCIHRLTFRPLRNL 207 E GP IHR +F L+N+ Sbjct: 188 EYGPCEIHRKSF--LKNI 203 >gi|229846090|ref|ZP_04466202.1| ribonuclease HII [Haemophilus influenzae 7P49H1] gi|229811094|gb|EEP46811.1| ribonuclease HII [Haemophilus influenzae 7P49H1] Length = 197 Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 86/182 (47%), Positives = 118/182 (64%), Gaps = 1/182 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I A+ ++ Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKALAWALG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+KGDS+ Sbjct: 71 RAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKGDSLVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR +F P+ Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRRSFAPV 190 Query: 205 RN 206 + Sbjct: 191 KK 192 >gi|153835395|ref|ZP_01988062.1| ribonuclease HII [Vibrio harveyi HY01] gi|269960605|ref|ZP_06174977.1| ribonuclease HII [Vibrio harveyi 1DA3] gi|148868081|gb|EDL67253.1| ribonuclease HII [Vibrio harveyi HY01] gi|269834682|gb|EEZ88769.1| ribonuclease HII [Vibrio harveyi 1DA3] Length = 212 Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 117/182 (64%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKR L +I A+ ++ Sbjct: 26 VAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEKALAWAVG 85 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S + ID+ NI +AT+ A+ A+ L+V P ALIDG P+ LP + AV+KGD Sbjct: 86 RCSPEEIDELNILQATMVAMQRAIAGLKVQPDLALIDGNRCPQ-LPMDSQAVVKGDLRVA 144 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKV RD+ M K+YP +GF H GYPT H + I++ G HR +F+P+ Sbjct: 145 EISAASIIAKVVRDQEMEELDKQYPQFGFAKHKGYPTKAHFEAIEQHGVISEHRKSFKPV 204 Query: 205 RN 206 + Sbjct: 205 KK 206 >gi|302187912|ref|ZP_07264585.1| ribonuclease HII [Pseudomonas syringae pv. syringae 642] Length = 218 Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 88/181 (48%), Positives = 115/181 (63%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+LY +I A+ I+ Sbjct: 15 VAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLYVEIQEKALCWFIA 74 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AVE L + P+ ALIDG P+ L + V+KGDS Sbjct: 75 RAEVEEIDQLNILHATMLAMQRAVEGLSITPKLALIDGNRCPQ-LSVPSAPVVKGDSKVP 133 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P+ Sbjct: 134 AIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 193 Query: 205 R 205 R Sbjct: 194 R 194 >gi|260752544|ref|YP_003225437.1| ribonuclease H [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551907|gb|ACV74853.1| Ribonuclease H [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 215 Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 87/186 (46%), Positives = 123/186 (66%), Gaps = 5/186 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 V G+DEVGRG LAGPV+ A+ L +IP GINDSKK++ ++R L + + + A + Sbjct: 26 VFGVDEVGRGPLAGPVMAGAVYLHREHIPEGINDSKKLTARRRHLLSDMLHNQADYATGM 85 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENL-QVI---PRSALIDGRSIPEDLPCQAFAVIKGDS 141 A+ ID+ NI +A+L A+ AVE L Q I P L+DGR IP D P + +IKGDS Sbjct: 86 ANVHEIDRINIRQASLLAMKRAVEALIQKIGREPDCILVDGRDIP-DWPWLSLPIIKGDS 144 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +SLSIAAASI+AKV RD +M A ++YP YG++ ++GYPT +H++ I+ P+ HR +F Sbjct: 145 LSLSIAAASIVAKVERDEIMVKASQEYPGYGWEHNMGYPTKEHREAIQRLKPTKFHRRSF 204 Query: 202 RPLRNL 207 P+R Sbjct: 205 SPIRQF 210 >gi|90425833|ref|YP_534203.1| ribonuclease HII [Rhodopseudomonas palustris BisB18] gi|122475150|sp|Q20YA2|RNH2_RHOPB RecName: Full=Ribonuclease HII; Short=RNase HII gi|90107847|gb|ABD89884.1| RNase HII [Rhodopseudomonas palustris BisB18] Length = 266 Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 1/195 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + ++ +WPVAG DE GRG LAGPVV AA++LDP IP G++DSK+++ KRE Sbjct: 44 PSFRRERALLKRGVWPVAGCDEAGRGPLAGPVVAAAVVLDPKRIPKGLDDSKRLTADKRE 103 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 +L+E+I ++A +++ AS ID+ NI +A+L A+ AV L +PR +DGR Sbjct: 104 QLFEQICATAAFAVAYASPARIDRDNILRASLWALAKAVHALPEMPRHVFVDGRDKIA-T 162 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C AVI GD + LSIAAASIIAKV+RDRLM + P YGF++H GY +H + Sbjct: 163 SCDCDAVIGGDGLVLSIAAASIIAKVSRDRLMCRLAEDCPGYGFENHKGYGVPEHLAALD 222 Query: 190 EKGPSCIHRLTFRPL 204 GPS HR F P+ Sbjct: 223 RLGPSKHHRRLFAPV 237 >gi|206890782|ref|YP_002248663.1| ribonuclease HII [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742720|gb|ACI21777.1| ribonuclease HII [Thermodesulfovibrio yellowstonii DSM 11347] Length = 201 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 89/196 (45%), Positives = 116/196 (59%), Gaps = 1/196 (0%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F + R + +AGIDE GRG LAGPVV A + + GI DSK++SH++RE L Sbjct: 4 FAFDESFRLQGYNLIAGIDEAGRGCLAGPVVAACVSFRDSVFIEGIKDSKELSHEQRESL 63 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +++I A + I ID+ NI +AT A+ A ENL LID +P L Sbjct: 64 FQEIIKHAFVGIGIVDVDLIDRVNILEATRLAMMEAFENLGREIELLLIDAVELPA-LKV 122 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A+IKGD S SIA+ASI+AKVTRDR+MR H+ YP YGFD H GY T +H +K+ Sbjct: 123 DQKALIKGDRKSASIASASIVAKVTRDRIMRQYHEAYPMYGFDKHKGYGTKEHLNALKKF 182 Query: 192 GPSCIHRLTFRPLRNL 207 GP IHR +F P+R L Sbjct: 183 GPCPIHRKSFSPVREL 198 >gi|238855692|ref|ZP_04645989.1| ribonuclease HII [Lactobacillus jensenii 269-3] gi|260664447|ref|ZP_05865299.1| ribonuclease HII [Lactobacillus jensenii SJ-7A-US] gi|282932206|ref|ZP_06337653.1| ribonuclease HII [Lactobacillus jensenii 208-1] gi|313472152|ref|ZP_07812644.1| ribonuclease HII [Lactobacillus jensenii 1153] gi|238831677|gb|EEQ24017.1| ribonuclease HII [Lactobacillus jensenii 269-3] gi|239529524|gb|EEQ68525.1| ribonuclease HII [Lactobacillus jensenii 1153] gi|260561512|gb|EEX27484.1| ribonuclease HII [Lactobacillus jensenii SJ-7A-US] gi|281303656|gb|EFA95811.1| ribonuclease HII [Lactobacillus jensenii 208-1] Length = 252 Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 92/190 (48%), Positives = 120/190 (63%), Gaps = 7/190 (3%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 E+ W VAG+DEVGRG LAGPVV AA++LD + +NDSKK+S KKR ELY +I Sbjct: 58 EQKAWAAGSIVAGVDEVGRGPLAGPVVTAAVVLDDSFDLVEVNDSKKLSPKKRLELYPRI 117 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A+ + I S + IDK NI++A A+ AV NL + P L+D ++P D+ + Sbjct: 118 LDKAVAVGIGVGSPELIDKINIYEADRVAMAQAVNNLALRPDLLLVDAMNVPVDI--KQI 175 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +IKGDS S SIAAASI+AKV RD LM K YP Y F+ + GY TAKH +KE G + Sbjct: 176 ELIKGDSKSNSIAAASIVAKVFRDELMNDYAKVYPQYDFEHNAGYGTAKHLAALKEFGAT 235 Query: 195 CIHRLTFRPL 204 IHR +F P+ Sbjct: 236 PIHRRSFSPV 245 >gi|325689693|gb|EGD31697.1| ribonuclease HII [Streptococcus sanguinis SK115] Length = 254 Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 90/203 (44%), Positives = 129/203 (63%), Gaps = 9/203 (4%) Query: 12 FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 LE M+R EK ++ +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI Sbjct: 52 LRLEQMLRYEKELYQAGYRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPK 111 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KK +E+Y+ + A+ + I ++ ID+ NI++AT A+ A+ L + P LID Sbjct: 112 KKHQEIYQAVMDKALAVGIGLMDNEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMK 171 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + ++P ++ +IKGD+ SLSIAAASI+AKVTRD+LM K++P Y F + GY T H Sbjct: 172 LDVEIPQES--IIKGDANSLSIAAASIVAKVTRDKLMTDYDKEFPGYDFAQNAGYGTKSH 229 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 Q ++ G + IHR TF P++++ Sbjct: 230 LQGLERNGVTPIHRKTFEPIKSM 252 >gi|145638129|ref|ZP_01793739.1| ribonuclease HII [Haemophilus influenzae PittII] gi|145272458|gb|EDK12365.1| ribonuclease HII [Haemophilus influenzae PittII] gi|309751294|gb|ADO81278.1| Ribonuclease HII [Haemophilus influenzae R2866] Length = 197 Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 86/182 (47%), Positives = 118/182 (64%), Gaps = 1/182 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I A+ ++ Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKALAWALG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+KGDS+ Sbjct: 71 RAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKGDSLVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR +F P+ Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAEFGALPQHRRSFAPV 190 Query: 205 RN 206 + Sbjct: 191 KK 192 >gi|28868754|ref|NP_791373.1| ribonuclease HII [Pseudomonas syringae pv. tomato str. DC3000] gi|213969132|ref|ZP_03397271.1| ribonuclease HII [Pseudomonas syringae pv. tomato T1] gi|301383973|ref|ZP_07232391.1| ribonuclease HII [Pseudomonas syringae pv. tomato Max13] gi|302064141|ref|ZP_07255682.1| ribonuclease HII [Pseudomonas syringae pv. tomato K40] gi|302134068|ref|ZP_07260058.1| ribonuclease HII [Pseudomonas syringae pv. tomato NCPPB 1108] gi|37999586|sp|Q886M9|RNH2_PSESM RecName: Full=Ribonuclease HII; Short=RNase HII gi|28851993|gb|AAO55068.1| ribonuclease HII [Pseudomonas syringae pv. tomato str. DC3000] gi|213926130|gb|EEB59686.1| ribonuclease HII [Pseudomonas syringae pv. tomato T1] gi|331016381|gb|EGH96437.1| ribonuclease HII [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 217 Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ KRE+L+ +I A+ I+ Sbjct: 14 VAGVDEVGRGPLCGAVVTAAVILDPAKPILGLNDSKKLTEAKREKLFVEIQEKALCWFIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AVE L + P+ ALIDG P+ L + V+KGDS Sbjct: 74 RAEVEEIDQLNILHATMLAMKRAVEGLSITPKLALIDGNRCPQ-LSVPSAPVVKGDSKVP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P+ Sbjct: 133 AIAAASILAKVSRDREMAALELIYPGYGIAGHKGYPTPVHLEALARLGPTPIHRRSFGPV 192 Query: 205 RN 206 R Sbjct: 193 RT 194 >gi|330964157|gb|EGH64417.1| ribonuclease HII [Pseudomonas syringae pv. actinidiae str. M302091] Length = 217 Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 88/181 (48%), Positives = 115/181 (63%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ KRE+L+ +I A+ I+ Sbjct: 14 VAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEAKREKLFVEIQEKALCWFIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AVE L + P+ ALIDG P+ L + V+KGDS Sbjct: 74 RAEVEEIDQLNILHATMLAMKRAVEGLNITPKLALIDGNRCPQ-LSVPSAPVVKGDSKVP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P+ Sbjct: 133 AIAAASILAKVSRDREMAALELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFGPV 192 Query: 205 R 205 R Sbjct: 193 R 193 >gi|269836504|ref|YP_003318732.1| Ribonuclease H [Sphaerobacter thermophilus DSM 20745] gi|269785767|gb|ACZ37910.1| Ribonuclease H [Sphaerobacter thermophilus DSM 20745] Length = 233 Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 93/208 (44%), Positives = 132/208 (63%), Gaps = 7/208 (3%) Query: 5 SIPER--PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDS 60 S P R P +EA + + + VAG+DEVGRG +AGPVV AA IL P +IP G+ DS Sbjct: 18 STPGRTEPSIHIEAELWARGLRLVAGVDEVGRGCVAGPVVAAACILPPGIEDIP-GVRDS 76 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 K +S ++RE L E+I A+ I + +AS + ID++NI +A+ A+ A+ L L Sbjct: 77 KTLSARQRERLAEEIRRVALGIGLGAASRREIDQYNIRQASALAMRRALARLGAWD-FVL 135 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 DGR +PE P + AV+KGD+ LSIA ASI+AKVTRD LM +++P+YG++ + GY Sbjct: 136 YDGRPLPELDPERTMAVVKGDASCLSIACASILAKVTRDALMARLARRHPEYGWERNAGY 195 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 TA+H + GP+ HR TF P+R+L Sbjct: 196 GTAEHLDALLRVGPTPHHRRTFAPVRDL 223 >gi|56551900|ref|YP_162739.1| ribonuclease H [Zymomonas mobilis subsp. mobilis ZM4] gi|81355085|sp|Q5NNT2|RNH2_ZYMMO RecName: Full=Ribonuclease HII; Short=RNase HII gi|56543474|gb|AAV89628.1| Ribonuclease H [Zymomonas mobilis subsp. mobilis ZM4] Length = 215 Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 87/186 (46%), Positives = 122/186 (65%), Gaps = 5/186 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 V G+DEVGRG LAGPV+ A+ L +IP GINDSKK++ ++R L + + + A + Sbjct: 26 VFGVDEVGRGPLAGPVMAGAVYLHREHIPEGINDSKKLTARRRHLLSDMLHNQADYATGM 85 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENL-QVI---PRSALIDGRSIPEDLPCQAFAVIKGDS 141 A ID+ NI +A+L A+ AVE L Q I P L+DGR IP D P + +IKGDS Sbjct: 86 ADVHEIDRINIRQASLLAMKRAVEALIQKIGREPDCILVDGRDIP-DWPWPSLPIIKGDS 144 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +SLSIAAASI+AKV RD +M A ++YP YG++ ++GYPT +H++ I+ P+ HR +F Sbjct: 145 LSLSIAAASIVAKVERDEIMVKASQEYPGYGWEHNMGYPTKEHREAIQRLKPTKFHRRSF 204 Query: 202 RPLRNL 207 P+R Sbjct: 205 SPIRQF 210 >gi|295676811|ref|YP_003605335.1| Ribonuclease H [Burkholderia sp. CCGE1002] gi|295436654|gb|ADG15824.1| Ribonuclease H [Burkholderia sp. CCGE1002] Length = 249 Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 88/183 (48%), Positives = 118/183 (64%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAII-SI 83 V G+DE GRG LAGPVV AA+I DP + G++DSK ++ KRE LY+KI A+ + Sbjct: 32 VCGVDEAGRGPLAGPVVAAAVIFDPTRPMIRGLDDSKALTALKREALYDKIVDRALAYCV 91 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SA+ + ID NI AT+ A+ AVE L V+P IDG P L ++ AVI GD++ Sbjct: 92 ASATVEEIDSLNILHATMLAMKRAVEGLSVVPTLVKIDGNRCPT-LSIRSEAVIGGDALV 150 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H YP YGFD+H GY T +H ++E GP HR +F P Sbjct: 151 KSISAASILAKVTRDRMLVELHHAYPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAP 210 Query: 204 LRN 206 +R Sbjct: 211 VRE 213 >gi|116617876|ref|YP_818247.1| RNase HII [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122271923|sp|Q03Y48|RNH2_LEUMM RecName: Full=Ribonuclease HII; Short=RNase HII gi|116096723|gb|ABJ61874.1| RNase HII [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 253 Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 98/206 (47%), Positives = 128/206 (62%), Gaps = 9/206 (4%) Query: 8 ERPHFELEAMVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62 +R HF L E+ W +AG+DEVGRG LAGPVV AA+IL + + DSK+ Sbjct: 50 KREHF-LSRFDIERQYWMQGYDLIAGVDEVGRGPLAGPVVAAAVILPHDFDVLDVIDSKQ 108 Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 +S KKR+ELY+KI AI I + ID+ NI++A A+ AV L IP + LID Sbjct: 109 LSAKKRDELYDKIIEKAISIGVGRVEASIIDEINIYEAARVAMTEAVNQLAPIPEALLID 168 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + DLP Q F +IKGD+ S SI AASIIAKVTRDRLM KYP YGF+ + GY T Sbjct: 169 AMRLDLDLP-QEF-LIKGDARSNSIGAASIIAKVTRDRLMASYGLKYPGYGFEKNAGYGT 226 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207 +H + IK+ G + IHR TF P++++ Sbjct: 227 KEHLEGIKKIGITPIHRKTFAPIKDI 252 >gi|306829522|ref|ZP_07462712.1| ribonuclease HII [Streptococcus mitis ATCC 6249] gi|304428608|gb|EFM31698.1| ribonuclease HII [Streptococcus mitis ATCC 6249] Length = 259 Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 94/208 (45%), Positives = 126/208 (60%), Gaps = 15/208 (7%) Query: 13 ELEAMVREKNMWP------------VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 ELE +R +NM +AG+DEVGRG LAGPVV AA+IL N G+NDS Sbjct: 47 ELEENLRLENMLSYEKELYKRGLTLIAGVDEVGRGPLAGPVVAAAVILPKNCKIRGLNDS 106 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KKI KK E+Y+ + A+ I I +Q ID+ NI++AT A+ A+ L P L Sbjct: 107 KKIPKKKHLEIYQAVQDQALAIGIGIMDNQVIDQVNIYEATKLAMKEAISQLTPQPEHLL 166 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 ID + DL A+IKGD+ SLSIAAASI+AKVTRD LM ++YP Y F ++ GY Sbjct: 167 IDAMKL--DLSIYQTAIIKGDANSLSIAAASIVAKVTRDELMMEYDQQYPGYDFTANAGY 224 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 TAKH + +++ G + IHR +F P++ L Sbjct: 225 GTAKHLEGLEKLGVTPIHRTSFEPVKTL 252 >gi|257465535|ref|ZP_05629906.1| ribonuclease HII [Actinobacillus minor 202] gi|257451195|gb|EEV25238.1| ribonuclease HII [Actinobacillus minor 202] Length = 196 Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 88/181 (48%), Positives = 118/181 (65%), Gaps = 4/181 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR +L E+I + A+ S+ Sbjct: 12 IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLSEKKRLKLSEEIKAKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AVE L + P L+DG IP ++P QA V+KGDS+ Sbjct: 72 RAEPEEIDQLNILHATMLAMQRAVEGLHIQPDFVLVDGNRIPTLNIPAQA--VVKGDSLV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RD M K++P+YGF H GYPT H + + E G + HR +F P Sbjct: 130 QEISAASILAKVARDLEMDELDKQFPEYGFAKHKGYPTKLHFEKLTELGATPFHRKSFAP 189 Query: 204 L 204 + Sbjct: 190 V 190 >gi|295692915|ref|YP_003601525.1| ribonuclease hii [Lactobacillus crispatus ST1] gi|295031021|emb|CBL50500.1| Ribonuclease HII [Lactobacillus crispatus ST1] Length = 250 Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 89/193 (46%), Positives = 123/193 (63%), Gaps = 7/193 (3%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 EK W VAG+DEVGRG LAGPVV AA+I+D + +NDSKK+S +KR +LY KI Sbjct: 58 EKKFWEKGQLVAGVDEVGRGPLAGPVVTAAVIIDQDFDLLDVNDSKKLSPEKRLKLYPKI 117 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 + A+ + I S + ID+ NI++A A+ AV L V P + L+D ++P +LP Sbjct: 118 LAEAVSVGIGVKSAEVIDQINIYEADRQAMAQAVRALDVKPNALLVDAMNVPVNLP--QV 175 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +IKGD+ S SIAAASI+AKV RD+LM + YP Y F + GY T +H + +K+ GP+ Sbjct: 176 KLIKGDAKSNSIAAASIVAKVFRDQLMDDYDRIYPQYCFHHNAGYGTKEHIEALKKYGPT 235 Query: 195 CIHRLTFRPLRNL 207 IHR TF P+ + Sbjct: 236 LIHRKTFAPVSDF 248 >gi|71738075|ref|YP_275964.1| ribonuclease HII [Pseudomonas syringae pv. phaseolicola 1448A] gi|298488346|ref|ZP_07006378.1| Ribonuclease HII [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|97189174|sp|Q48F73|RNH2_PSE14 RecName: Full=Ribonuclease HII; Short=RNase HII gi|71558628|gb|AAZ37839.1| Ribonuclease HII (RNase HII) [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157168|gb|EFH98256.1| Ribonuclease HII [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 222 Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 88/181 (48%), Positives = 115/181 (63%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+LY +I A+ I+ Sbjct: 19 VAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLYVEIQEKALCWFIA 78 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AVE L + P+ ALIDG P+ L + V+KGDS Sbjct: 79 RAEVEEIDQLNILHATMLAMKRAVEGLSITPKLALIDGNRCPQ-LSVPSAPVVKGDSRVP 137 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P+ Sbjct: 138 AIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 197 Query: 205 R 205 R Sbjct: 198 R 198 >gi|229528751|ref|ZP_04418141.1| ribonuclease HII [Vibrio cholerae 12129(1)] gi|229332525|gb|EEN98011.1| ribonuclease HII [Vibrio cholerae 12129(1)] Length = 206 Score = 158 bits (399), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 93/200 (46%), Positives = 123/200 (61%), Gaps = 7/200 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE+ A +AG+DEVGRG L G VV AA+ILDP+ G+NDSKK+S KK Sbjct: 8 ELPPFEIPA-----GYALIAGVDEVGRGPLVGDVVTAAVILDPHRPIVGLNDSKKLSEKK 62 Query: 68 REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L+ +I A+ ++ S Q ID+ NI +AT+ A+ AV L++ P LIDG IP Sbjct: 63 RLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNKIP 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + LP +A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 123 K-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAHFA 181 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 182 AIEQHGVIEQHRKSFGPVKR 201 >gi|282852052|ref|ZP_06261410.1| ribonuclease HII [Lactobacillus gasseri 224-1] gi|282556812|gb|EFB62416.1| ribonuclease HII [Lactobacillus gasseri 224-1] Length = 250 Score = 158 bits (399), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 88/190 (46%), Positives = 125/190 (65%), Gaps = 7/190 (3%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 EK W VAG+DEVGRG LAGPVV AA+IL N +NDSKK+S KKR+EL+ KI Sbjct: 58 EKKFWQKSQLVAGVDEVGRGPLAGPVVTAAVILPHNFDLIDVNDSKKLSPKKRKELFPKI 117 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 + A+ + + A++ ID+ NI++A A+ HAV+ L+V P + L+D ++P ++P Sbjct: 118 LAKAVSVGVGLANNDVIDRINIYEADRLAMAHAVQGLKVKPDALLVDAMNVPLNIP--QV 175 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +I GD+ S SIAAASI+AKV RD LM + YP+Y F + GY T +H + +K+ GP+ Sbjct: 176 KLIHGDAKSNSIAAASIVAKVFRDNLMDAYGEVYPEYDFKHNAGYGTREHMEALKKYGPT 235 Query: 195 CIHRLTFRPL 204 IHR +F P+ Sbjct: 236 PIHRRSFAPV 245 >gi|289626020|ref|ZP_06458974.1| ribonuclease HII [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330868556|gb|EGH03265.1| ribonuclease HII [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 217 Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 88/181 (48%), Positives = 115/181 (63%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+LY +I A+ I+ Sbjct: 14 VAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLYVEIQEKALCWFIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AVE L + P+ ALIDG P+ L + V+KGDS Sbjct: 74 RAEVEEIDQLNILHATMLAMKRAVEGLSITPKLALIDGNRCPQ-LSVPSAPVVKGDSRVP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P+ Sbjct: 133 AIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 192 Query: 205 R 205 R Sbjct: 193 R 193 >gi|331091010|ref|ZP_08339852.1| hypothetical protein HMPREF9477_00495 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405232|gb|EGG84768.1| hypothetical protein HMPREF9477_00495 [Lachnospiraceae bacterium 2_1_46FAA] Length = 252 Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 95/197 (48%), Positives = 124/197 (62%), Gaps = 6/197 (3%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 I E +E E + E + GIDEVGRG LAGPVV A+IL + + +NDSKK+S Sbjct: 56 IEEMSRYEQENCMEEY----ICGIDEVGRGPLAGPVVAGAVILPKDEMILYLNDSKKLSE 111 Query: 66 KKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKREELY+ I A+ + I S ID+ NI +AT +A+ A++NL+V P L D + Sbjct: 112 KKREELYDIIMERAVAAGIGIVSPARIDEINILQATYEAMRMAIDNLKVQPTLLLNDAVT 171 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IP + + +IKGD+ S+SIAAASIIAKVTRDRLM+ K P Y F S+ GY +A H Sbjct: 172 IP-SVNIRQIPIIKGDAKSVSIAAASIIAKVTRDRLMKEYDKVIPGYDFASNKGYGSAAH 230 Query: 185 QQVIKEKGPSCIHRLTF 201 Q +KE G + IHR TF Sbjct: 231 IQALKENGATLIHRKTF 247 >gi|307249333|ref|ZP_07531327.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251656|ref|ZP_07533561.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307256154|ref|ZP_07537941.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307262716|ref|ZP_07544344.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306858627|gb|EFM90689.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860853|gb|EFM92861.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306865335|gb|EFM97231.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306871971|gb|EFN03687.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 186 Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 88/183 (48%), Positives = 118/183 (64%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L E+I + A+ S+ Sbjct: 2 IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLLLAEEIKAKALCWSLG 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L + P L+DG IP LP A AVIKGDS+ Sbjct: 62 RAEPEEIDRLNILHATMLAMQRAVAGLNIQPDFVLVDGNRIP-TLPMPAQAVIKGDSLVA 120 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M +YP+YGF H GYPT H + +++ G + HR +F P+ Sbjct: 121 EISAASILAKVARDQEMAELDVQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKSFAPV 180 Query: 205 RNL 207 + + Sbjct: 181 KKI 183 >gi|325687470|gb|EGD29491.1| ribonuclease HII [Streptococcus sanguinis SK72] Length = 254 Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 90/203 (44%), Positives = 129/203 (63%), Gaps = 9/203 (4%) Query: 12 FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 LE M+R EK ++ +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI Sbjct: 52 LRLEQMLRYEKELYQAGHLAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPK 111 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KK +E+Y+++ A+ + I + ID+ NI++AT A+ A+ L + P LID Sbjct: 112 KKHQEIYKEVMDKALAVGIGLMDSEMIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMK 171 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + ++P ++ +IKGD+ SLSIAAASI+AKVTRD+LM K++P Y F + GY T H Sbjct: 172 LDVEIPQES--IIKGDANSLSIAAASIVAKVTRDKLMTDYDKEFPGYDFAKNAGYGTKSH 229 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 Q ++ G + IHR TF P++++ Sbjct: 230 LQGLERNGVTPIHRKTFEPVKSM 252 >gi|76787278|ref|YP_329728.1| ribonuclease HII [Streptococcus agalactiae A909] gi|77406999|ref|ZP_00784013.1| ribonuclease HII [Streptococcus agalactiae H36B] gi|97189340|sp|Q3K175|RNH2_STRA1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|76562335|gb|ABA44919.1| ribonuclease HII [Streptococcus agalactiae A909] gi|77174385|gb|EAO77240.1| ribonuclease HII [Streptococcus agalactiae H36B] Length = 253 Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 91/199 (45%), Positives = 126/199 (63%), Gaps = 8/199 (4%) Query: 15 EAMVREKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 + +V EK ++ +AGIDEVGRG LAGPVV AA+IL PN +NDSKKI KK + Sbjct: 56 QMLVYEKKLYIEHINLIAGIDEVGRGPLAGPVVAAAVILPPNCKIKHLNDSKKIPKKKHQ 115 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E+Y+ I A+ + I Q ID NI++AT A+ AV +L V+P LID + D Sbjct: 116 EIYQNILDQALAVGIGIQDSQCIDDINIYEATKHAMIDAVSHLSVVPEHLLIDAMVL--D 173 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LP +IKGD+ SLSIAAASI+AKVTRD++M KYP Y F + GY T +H + + Sbjct: 174 LPIPQTKIIKGDANSLSIAAASIVAKVTRDKIMSDYDSKYPGYAFSKNAGYGTKEHLEGL 233 Query: 189 KEKGPSCIHRLTFRPLRNL 207 ++ G + IHR +F P++++ Sbjct: 234 QKYGITPIHRKSFEPIKSM 252 >gi|322387852|ref|ZP_08061460.1| ribonuclease HII [Streptococcus infantis ATCC 700779] gi|321141354|gb|EFX36851.1| ribonuclease HII [Streptococcus infantis ATCC 700779] Length = 259 Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 92/203 (45%), Positives = 130/203 (64%), Gaps = 9/203 (4%) Query: 11 HFELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 + LEAM+ EK ++ +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI Sbjct: 51 NLRLEAMLSYEKELYIQGINLIAGVDEVGRGPLAGPVVAAAVILPQNCKIKGLNDSKKIP 110 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KK EE+++ + +A+ I I + ID+ NI++AT A+ A+ L+ P LID Sbjct: 111 KKKHEEIFQAVKENALAIGIGIMDNHVIDQVNIYEATKLAMNEAISQLEPQPEHLLIDAM 170 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + DLP ++IKGD+ SLSIAAASIIAKVTRD++M +++P Y F + GY TAK Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIIAKVTRDKIMANYDEEFPGYDFAQNAGYGTAK 228 Query: 184 HQQVIKEKGPSCIHRLTFRPLRN 206 H + I++ G + IHR +F P++ Sbjct: 229 HIEGIEKHGVTPIHRTSFEPIKT 251 >gi|257487068|ref|ZP_05641109.1| ribonuclease HII [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289651463|ref|ZP_06482806.1| ribonuclease HII [Pseudomonas syringae pv. aesculi str. 2250] gi|320323106|gb|EFW79195.1| ribonuclease HII [Pseudomonas syringae pv. glycinea str. B076] gi|320329622|gb|EFW85611.1| ribonuclease HII [Pseudomonas syringae pv. glycinea str. race 4] gi|330878151|gb|EGH12300.1| ribonuclease HII [Pseudomonas syringae pv. glycinea str. race 4] gi|330894608|gb|EGH27269.1| ribonuclease HII [Pseudomonas syringae pv. mori str. 301020] gi|330985124|gb|EGH83227.1| ribonuclease HII [Pseudomonas syringae pv. lachrymans str. M301315] Length = 217 Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 88/181 (48%), Positives = 115/181 (63%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+LY +I A+ I+ Sbjct: 14 VAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLYVEIQEKALCWFIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AVE L + P+ ALIDG P+ L + V+KGDS Sbjct: 74 RAEVEEIDQLNILHATMLAMKRAVEGLSITPKLALIDGNRCPQ-LSVPSAPVVKGDSRVP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P+ Sbjct: 133 AIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 192 Query: 205 R 205 R Sbjct: 193 R 193 >gi|15903088|ref|NP_358638.1| ribonuclease HII [Streptococcus pneumoniae R6] gi|116515974|ref|YP_816494.1| ribonuclease HII [Streptococcus pneumoniae D39] gi|148985764|ref|ZP_01818892.1| ribonuclease HII [Streptococcus pneumoniae SP3-BS71] gi|32171635|sp|Q8DPR3|RNH2_STRR6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|122278620|sp|Q04KF4|RNH2_STRP2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|15458664|gb|AAK99848.1| Ribonuclease H [Streptococcus pneumoniae R6] gi|116076550|gb|ABJ54270.1| ribonuclease HII [Streptococcus pneumoniae D39] gi|147922068|gb|EDK73191.1| ribonuclease HII [Streptococcus pneumoniae SP3-BS71] gi|301800096|emb|CBW32697.1| ribonuclease HII [Streptococcus pneumoniae OXC141] Length = 259 Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 91/204 (44%), Positives = 129/204 (63%), Gaps = 9/204 (4%) Query: 11 HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 + LE+M+ EK ++ + GIDEVGRG LAGPVV AA+IL N G+NDSKKI Sbjct: 51 NLRLESMLSYEKELYKQGLTLIVGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KK E+++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + DLP ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAK Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAK 228 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H + + + G + IHR +F P+++L Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252 >gi|322375250|ref|ZP_08049763.1| ribonuclease HII [Streptococcus sp. C300] gi|321279513|gb|EFX56553.1| ribonuclease HII [Streptococcus sp. C300] Length = 259 Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 93/203 (45%), Positives = 127/203 (62%), Gaps = 9/203 (4%) Query: 12 FELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 LE+M+ EK ++ +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI Sbjct: 52 LRLESMLSYEKELYKQGVALIAGVDEVGRGPLAGPVVAAAVILPKNCKINGLNDSKKIPK 111 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KK E+Y + A+ I I +Q ID+ NI++AT A+ A+ L P LID Sbjct: 112 KKHLEIYHAVQDQALAIGIGIMDNQVIDQVNIYEATKLAMKEAISQLSPQPDHLLIDAMK 171 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + DL A+IKGD+ SLSIAAASI+AKVTRD LM+ ++YP Y F ++ GY TAKH Sbjct: 172 L--DLSISQTAIIKGDANSLSIAAASIVAKVTRDELMKEYDQQYPGYDFTANAGYGTAKH 229 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 + +++ G + IHR +F P++ L Sbjct: 230 LEGLEKLGVTPIHRTSFEPVKTL 252 >gi|168492508|ref|ZP_02716651.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC0288-04] gi|168493082|ref|ZP_02717225.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC3059-06] gi|221231870|ref|YP_002511022.1| ribonuclease HII [Streptococcus pneumoniae ATCC 700669] gi|225854632|ref|YP_002736144.1| ribonuclease HII [Streptococcus pneumoniae JJA] gi|254807990|sp|B8ZQ37|RNH2_STRPJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807992|sp|C1CEC3|RNH2_STRZJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|183573321|gb|EDT93849.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC0288-04] gi|183576643|gb|EDT97171.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC3059-06] gi|220674330|emb|CAR68876.1| ribonuclease HII [Streptococcus pneumoniae ATCC 700669] gi|225722957|gb|ACO18810.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae JJA] Length = 259 Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 91/204 (44%), Positives = 129/204 (63%), Gaps = 9/204 (4%) Query: 11 HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 + LE+M+ EK ++ + GIDEVGRG LAGPVV AA+IL N G+NDSKKI Sbjct: 51 NLRLESMLSYEKELYKQGLTLIVGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KK E+++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + DLP ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAK Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAK 228 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H + + + G + IHR +F P+++L Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252 >gi|327392811|dbj|BAK10233.1| ribonuclease HII RnhB [Pantoea ananatis AJ13355] Length = 231 Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 90/208 (43%), Positives = 122/208 (58%), Gaps = 6/208 (2%) Query: 4 NSIPERPHFELEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGIND 59 ++ +P ++ ++P +AG+DEVGRG L G VV AA+ILDP N G+ D Sbjct: 9 GTLTNKPQMRCWSLPMADFIYPAAGCIAGVDEVGRGPLVGAVVTAAVILDPANPVPGLAD 68 Query: 60 SKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 SKK+S K+R L+++I A+ S+ A ID NI AT+ A+ AV L + P Sbjct: 69 SKKLSEKRRLALFDQIKEKALAWSLGRAEPDEIDNLNILHATMLAMQRAVAGLSITPDFV 128 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 LIDG P LP + AV+KGDS+ I+AASIIAKVTRDR M +P YGF H G Sbjct: 129 LIDGNRCPA-LPMPSLAVVKGDSLVAEISAASIIAKVTRDREMAELDLLFPQYGFAQHKG 187 Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 YPTA H + + + G + HR +F P+RN Sbjct: 188 YPTALHMEKLTQYGATPHHRRSFAPVRN 215 >gi|325121486|gb|ADY81009.1| RNAse HII [Acinetobacter calcoaceticus PHEA-2] Length = 188 Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 84/183 (45%), Positives = 120/183 (65%), Gaps = 5/183 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A+ SI+ Sbjct: 3 IAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWSIA 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--PCQAFAVIKGDSI 142 A+H ID+ NI +AT A+ AV+ L+ P+ ++DG IP+ + PC+A ++ GD+ Sbjct: 63 EATHAEIDELNILQATFLAMQRAVDGLKTQPQKVIVDGNQIPKGIIIPCEA--IVGGDAS 120 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M ++YP +GF H GYPT H + I G HR ++ Sbjct: 121 HAEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAVHGVIDQHRRSYA 180 Query: 203 PLR 205 P++ Sbjct: 181 PVK 183 >gi|302872177|ref|YP_003840813.1| Ribonuclease H [Caldicellulosiruptor obsidiansis OB47] gi|302575036|gb|ADL42827.1| Ribonuclease H [Caldicellulosiruptor obsidiansis OB47] Length = 206 Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 85/198 (42%), Positives = 128/198 (64%), Gaps = 4/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 +FE+E + + + G+DE GRG LAGPV AA+++D I G+ DSKK++ KKRE+ Sbjct: 9 YFEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREK 68 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+E+I +I S++ + ID+ NI+ AT + +A+ENL++ P L+DG IP +L Sbjct: 69 LFEEIIKGSIAYSVAMVDSKIIDEININNATFLVMKNAIENLKIEPDIVLVDGYEIP-NL 127 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A+IKGD S SIA ASI+AKV+RDR + KYP Y F+ H GY T +H ++++ Sbjct: 128 NFNQRAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPLYKFEKHKGYGTKEHIEILQ 187 Query: 190 EKGPSCIHRLTFRPLRNL 207 + GP IHR++F L+N+ Sbjct: 188 KYGPCEIHRISF--LKNI 203 >gi|71907386|ref|YP_284973.1| ribonuclease HII/HIII [Dechloromonas aromatica RCB] gi|97182398|sp|Q47F78|RNH2_DECAR RecName: Full=Ribonuclease HII; Short=RNase HII gi|71847007|gb|AAZ46503.1| RNase HII [Dechloromonas aromatica RCB] Length = 196 Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 96/187 (51%), Positives = 125/187 (66%), Gaps = 5/187 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 V GIDE GRG LAGPVV AA+ILDP G+NDSKK+S KKR+ L E I A+ +++ Sbjct: 11 VCGIDEAGRGPLAGPVVAAAVILDPERPIVGLNDSKKLSEKKRDALAEIIRERALAWAVA 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 A+ + ID+ NI +AT+ A+ AV LQV SAL+DG P+ D+PC+A V+KGD Sbjct: 71 EATVEEIDRLNILQATMLAMQRAVAALQVKAESALVDGNRCPKLDIPCEA--VVKGDGKI 128 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SIAAASI+AK RD M + H +YP YGFD H+GYPTA H ++ G S +HR +F P Sbjct: 129 ASIAAASILAKTVRDAGMLVLHAQYPHYGFDRHMGYPTAAHFAALEAHGASPVHRRSFGP 188 Query: 204 L-RNLSV 209 + R LS+ Sbjct: 189 VARQLSL 195 >gi|332360459|gb|EGJ38270.1| ribonuclease HII [Streptococcus sanguinis SK355] Length = 254 Score = 157 bits (398), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 90/201 (44%), Positives = 129/201 (64%), Gaps = 9/201 (4%) Query: 14 LEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LE M+R EK ++ +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK Sbjct: 54 LEQMLRYEKELYQAGYLAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKK 113 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 +E+Y+++ A+ + I + ID+ NI++AT A+ A+ L + P LID + Sbjct: 114 HQEIYKEVMDKALAVGIGLMDSEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKLD 173 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 ++P ++ +IKGD+ SLSIAAAS++AKVTRD+LM K+YP Y F + GY T H Q Sbjct: 174 VEIPQES--IIKGDANSLSIAAASVVAKVTRDKLMADYDKEYPGYDFAKNAGYGTKSHLQ 231 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 ++ G + IHR TF P++++ Sbjct: 232 GLERNGVTPIHRKTFEPVKSM 252 >gi|165975585|ref|YP_001651178.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149400|ref|YP_001967925.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249833|ref|ZP_07336037.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|238687515|sp|B0BS34|RNH2_ACTPJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|238692371|sp|B3GZX1|RNH2_ACTP7 RecName: Full=Ribonuclease HII; Short=RNase HII gi|165875686|gb|ABY68734.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914531|gb|ACE60783.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302651400|gb|EFL81552.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 197 Score = 157 bits (398), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 88/183 (48%), Positives = 118/183 (64%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L E+I + A+ S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLLLAEEIKAKALCWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L + P L+DG IP LP A AVIKGDS+ Sbjct: 73 RAEPEEIDRLNILHATMLAMQRAVAGLNIQPDFVLVDGNRIP-TLPMPAQAVIKGDSLVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M +YP+YGF H GYPT H + +++ G + HR +F P+ Sbjct: 132 EISAASILAKVARDQEMAELDVQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKSFAPV 191 Query: 205 RNL 207 + + Sbjct: 192 KKI 194 >gi|317493174|ref|ZP_07951597.1| ribonuclease HII [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918834|gb|EFV40170.1| ribonuclease HII [Enterobacteriaceae bacterium 9_2_54FAA] Length = 207 Score = 157 bits (398), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 87/183 (47%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LYE+I A+ S+ Sbjct: 23 IAGVDEVGRGPLVGAVVTAAVILDPARPIIGLADSKKLSEKRRNALYEEIVEKALSWSLG 82 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L V P LIDG P+ LP + AV+KGDS Sbjct: 83 RAEPHEIDELNILHATMLAMQRAVAGLSVEPDYVLIDGNRCPK-LPMASQAVVKGDSRVA 141 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M + ++P+YGF H GYPTA H + + + G + HR +F P+ Sbjct: 142 EISAASILAKVTRDREMEVLDAQFPEYGFAQHKGYPTAFHLERLAQLGATVHHRRSFGPV 201 Query: 205 RNL 207 + + Sbjct: 202 KRV 204 >gi|256851135|ref|ZP_05556524.1| ribonuclease HII [Lactobacillus jensenii 27-2-CHN] gi|260660559|ref|ZP_05861474.1| ribonuclease HII [Lactobacillus jensenii 115-3-CHN] gi|282934516|ref|ZP_06339770.1| ribonuclease HII [Lactobacillus jensenii 208-1] gi|297206001|ref|ZP_06923396.1| ribonuclease H [Lactobacillus jensenii JV-V16] gi|256616197|gb|EEU21385.1| ribonuclease HII [Lactobacillus jensenii 27-2-CHN] gi|260548281|gb|EEX24256.1| ribonuclease HII [Lactobacillus jensenii 115-3-CHN] gi|281301409|gb|EFA93699.1| ribonuclease HII [Lactobacillus jensenii 208-1] gi|297149127|gb|EFH29425.1| ribonuclease H [Lactobacillus jensenii JV-V16] Length = 252 Score = 157 bits (398), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 93/190 (48%), Positives = 120/190 (63%), Gaps = 7/190 (3%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 E+ W VAG+DEVGRG LAGPVV AA+ILD + +NDSKK+S KKR ELY +I Sbjct: 58 EQKAWKAGSIVAGVDEVGRGPLAGPVVTAAVILDDSFDLVEVNDSKKLSPKKRLELYPQI 117 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A+ + I S + ID+ NI++A A+ AV NL + P L+D ++P D+ + Sbjct: 118 LDKAVAVGIGVGSPELIDRINIYEADRVAMAQAVNNLAIKPDLLLVDAMNVPVDI--KQI 175 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +IKGDS S SIAAASIIAKV RD LM K YP Y F+ + GY TAKH +KE G + Sbjct: 176 ELIKGDSKSNSIAAASIIAKVFRDELMNDYAKVYPQYDFEHNAGYGTAKHIAALKEFGAT 235 Query: 195 CIHRLTFRPL 204 IHR +F P+ Sbjct: 236 PIHRRSFSPV 245 >gi|167769415|ref|ZP_02441468.1| hypothetical protein ANACOL_00745 [Anaerotruncus colihominis DSM 17241] gi|167668383|gb|EDS12513.1| hypothetical protein ANACOL_00745 [Anaerotruncus colihominis DSM 17241] Length = 200 Score = 157 bits (398), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 91/201 (45%), Positives = 121/201 (60%), Gaps = 7/201 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +E E R + V G+DE GRG LAG V AA+IL P G+NDSKK+S K+RE L Sbjct: 4 YEFEQAARREGYAAVCGVDEAGRGPLAGDVYAAAVILPPGLELAGVNDSKKLSEKRREAL 63 Query: 72 YEKIT-SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--ED 128 Y IT +A ++SAS + I++ NI +A+L A+ AVE L V AL+DG P E Sbjct: 64 YGVITEQAAAWCVASASVEEIERLNILQASLLAMRRAVEGLGVRADFALVDGNRDPHFEG 123 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 +PC+ ++ GD S S+AAASI+AKVTRDR M +YP YGF+ H GY T H++ + Sbjct: 124 VPCKT--IVGGDGKSASVAAASILAKVTRDRYMEQLAARYPQYGFERHKGYGTQAHREAL 181 Query: 189 KEKGPSCIHRLTFRPLRNLSV 209 + GP HR F LR L + Sbjct: 182 LKYGPCPAHRKLF--LRRLGL 200 >gi|239826598|ref|YP_002949222.1| ribonuclease H [Geobacillus sp. WCH70] gi|259494066|sp|C5D8U9|RNH2_GEOSW RecName: Full=Ribonuclease HII; Short=RNase HII gi|239806891|gb|ACS23956.1| Ribonuclease H [Geobacillus sp. WCH70] Length = 277 Score = 157 bits (398), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 89/194 (45%), Positives = 124/194 (63%), Gaps = 3/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + E+ + +AGIDE GRG LAGPVV AA++L + G+NDSKK+S KRE L+ Sbjct: 63 ERQLFEQGIEYIAGIDEAGRGPLAGPVVAAAVMLPKDAYIPGLNDSKKLSEAKREMLFHM 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I S AI I I + ID+ NI++AT A+ AVE L P LID ++P P Q+ Sbjct: 123 IQSCAISIGIGVVTAAEIDEMNIYEATKKAMIKAVEQLSPKPDYLLIDAMTLPISTPQQS 182 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++KGD+ S+SIAA+SIIAKVTRD M+ K+YP YGF+ ++GY TA+H + I+ G Sbjct: 183 --IVKGDANSVSIAASSIIAKVTRDHFMKQLAKQYPQYGFEKNMGYGTAQHLEAIRVYGT 240 Query: 194 SCIHRLTFRPLRNL 207 HR +F P++ + Sbjct: 241 IDEHRRSFSPIKEM 254 >gi|291616360|ref|YP_003519102.1| RnhB [Pantoea ananatis LMG 20103] gi|291151390|gb|ADD75974.1| RnhB [Pantoea ananatis LMG 20103] Length = 215 Score = 157 bits (398), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 113/182 (62%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK+S K+R L+++I A+ S+ Sbjct: 19 IAGVDEVGRGPLVGAVVTAAVILDPANPVPGLADSKKLSEKRRLALFDQIKEKALAWSLG 78 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID NI AT+ A+ AV L + P LIDG P LP + AV+KGDS+ Sbjct: 79 RAEPDEIDNLNILHATMLAMQRAVAGLSITPDFVLIDGNRCPA-LPMPSLAVVKGDSLVA 137 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKVTRDR M +P YGF H GYPTA H + + + G + HR +F P+ Sbjct: 138 EISAASIIAKVTRDREMAELDLLFPQYGFAQHKGYPTALHMEKLTQYGATPHHRRSFAPV 197 Query: 205 RN 206 RN Sbjct: 198 RN 199 >gi|171059517|ref|YP_001791866.1| ribonuclease HII [Leptothrix cholodnii SP-6] gi|170776962|gb|ACB35101.1| Ribonuclease H [Leptothrix cholodnii SP-6] Length = 218 Score = 157 bits (398), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 85/182 (46%), Positives = 121/182 (66%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DE GRG LAGPVV AA+ILD G+ DSK ++ ++RE L+++I + A+ I+ Sbjct: 26 MAGVDEAGRGPLAGPVVAAAVILDELQPIAGLADSKILTERRRERLFDEIRAKALAFCIA 85 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID+ NI +AT+ A+ AVE L++ P L+DG +P L A A++KGD+ Sbjct: 86 QASVEEIDRLNILQATMLAMKRAVEGLRLKPAQVLVDGNRVPV-LRIPAEAIVKGDAKVP 144 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKV RDRL + H+ YP YGF H GYPTA H Q +K+ GP HR ++ P+ Sbjct: 145 AISAASILAKVHRDRLCQALHELYPHYGFAVHKGYPTAAHLQALKDHGPCESHRKSYAPV 204 Query: 205 RN 206 R Sbjct: 205 RE 206 >gi|50084434|ref|YP_045944.1| ribonuclease HII [Acinetobacter sp. ADP1] gi|73917594|sp|Q6FCT7|RNH2_ACIAD RecName: Full=Ribonuclease HII; Short=RNase HII gi|49530410|emb|CAG68122.1| RNAse HII [Acinetobacter sp. ADP1] Length = 189 Score = 157 bits (398), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 84/181 (46%), Positives = 118/181 (65%), Gaps = 1/181 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DE GRG L G VV AA+ILDP+N G+NDSKK++ KKRE+L+ +I A+ SI+ Sbjct: 2 IAGVDEAGRGPLVGSVVAAAVILDPHNPIDGLNDSKKLTEKKREKLFVEIQEKALAWSIA 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A+H ID+ NI +AT A+ AV+ LQ+ P L+DG IP+ + A++ GD+ Sbjct: 62 EANHIEIDELNILQATFLAMRRAVDGLQIQPDKVLVDGNQIPKGISIHCEAIVGGDASHA 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M++ +KYP +GF H GYPT H Q I G HR ++ P+ Sbjct: 122 EISAASILAKVYRDQQMKLLDEKYPLFGFAKHKGYPTKAHFQAIAIHGVVDEHRRSYAPV 181 Query: 205 R 205 R Sbjct: 182 R 182 >gi|37524687|ref|NP_928031.1| ribonuclease HII [Photorhabdus luminescens subsp. laumondii TTO1] gi|39932267|sp|Q7N8N3|RNH2_PHOLL RecName: Full=Ribonuclease HII; Short=RNase HII gi|36784112|emb|CAE12981.1| Ribonuclease HII (RNase HII) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 196 Score = 157 bits (398), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 89/182 (48%), Positives = 116/182 (63%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+RE LY +IT A+ S+ Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPLQPIVGLADSKKLSEKRREALYLEITEKALCWSLG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV NL + P LIDG P+ LP A AVIKGD + Sbjct: 71 RAEPAEIDQLNILHATMLAMQRAVANLPISPEYVLIDGNRCPK-LPMPAQAVIKGDGLVA 129 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M + +P+YGF H GYPTA H + + + G + HR +F P+ Sbjct: 130 EISAASIVAKVTRDREMAELDQLFPEYGFAKHKGYPTAFHLEKLVQLGATEHHRKSFAPV 189 Query: 205 RN 206 + Sbjct: 190 KR 191 >gi|149192146|ref|ZP_01870367.1| ribonuclease HII [Vibrio shilonii AK1] gi|148834016|gb|EDL51032.1| ribonuclease HII [Vibrio shilonii AK1] Length = 208 Score = 157 bits (398), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 88/181 (48%), Positives = 115/181 (63%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L G +V AA+ILDPNN G+NDSKK+S KKR LY +I A+ ++ Sbjct: 22 VAGVDEVGRGPLVGDIVTAAVILDPNNPIEGLNDSKKLSEKKRLALYPEIKEKALAWAVG 81 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S ID+ NI +AT+ A+ AV LQV P LIDG P LP A AV+KGD Sbjct: 82 RCSPTEIDELNILQATMVAMQRAVAGLQVQPDMVLIDGNRTPT-LPMDAQAVVKGDLRVA 140 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKV RD+ M +++P +GF H GYPT H + I++ G HR +F+P+ Sbjct: 141 EISAASIIAKVVRDQEMEELDQQHPQFGFAKHKGYPTKAHFEAIEQHGVIAEHRKSFKPV 200 Query: 205 R 205 + Sbjct: 201 K 201 >gi|16272990|ref|NP_439217.1| ribonuclease HII [Haemophilus influenzae Rd KW20] gi|260580145|ref|ZP_05847975.1| ribonuclease HII [Haemophilus influenzae RdAW] gi|1173096|sp|P43808|RNH2_HAEIN RecName: Full=Ribonuclease HII; Short=RNase HII gi|1574610|gb|AAC22714.1| ribonuclease HII (rnhB) [Haemophilus influenzae Rd KW20] gi|260093429|gb|EEW77362.1| ribonuclease HII [Haemophilus influenzae RdAW] Length = 197 Score = 157 bits (398), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 117/182 (64%), Gaps = 1/182 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I A ++ Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKARAWALG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI +A+L A+ AV++L++ P LIDG IP+DL A AV+KGDS+ Sbjct: 71 RAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLIDGNKIPKDLAIPAQAVVKGDSLVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR +F P+ Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRRSFAPV 190 Query: 205 RN 206 + Sbjct: 191 KK 192 >gi|327474218|gb|EGF19625.1| ribonuclease HII [Streptococcus sanguinis SK408] Length = 254 Score = 157 bits (397), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 90/203 (44%), Positives = 128/203 (63%), Gaps = 9/203 (4%) Query: 12 FELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 LE M+R EK ++ +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI Sbjct: 52 LRLEQMLRYEKELYQAGYQRIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPK 111 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KK +E+Y+ + A+ + I + ID+ NI++AT A+ A+ L + P LID Sbjct: 112 KKHQEIYQAVMDKALAVGIGLMDSEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMK 171 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + ++P ++ +IKGD+ SLSIAAASI+AKVTRD+LM K++P Y F + GY T H Sbjct: 172 LDVEIPQES--IIKGDANSLSIAAASIVAKVTRDKLMTDYDKEFPGYDFAQNAGYGTKSH 229 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 Q ++ G + IHR TF P++++ Sbjct: 230 LQGLERNGVTPIHRKTFEPVKSM 252 >gi|294635136|ref|ZP_06713646.1| ribonuclease HII [Edwardsiella tarda ATCC 23685] gi|291091472|gb|EFE24033.1| ribonuclease HII [Edwardsiella tarda ATCC 23685] Length = 197 Score = 157 bits (397), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 88/183 (48%), Positives = 115/183 (62%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A+ S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPARPIRGLADSKKLSEKRRNALYDEIVEKALCWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI +AT+ A+ AV L + P LIDG P LP A AV+KGDS Sbjct: 73 RAEPEEIDRLNILQATMVAMQRAVAGLTLPPDLVLIDGNRCPA-LPMAAQAVVKGDSRVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M ++YP YGF H GYPTA H + E G + HR +F P+ Sbjct: 132 EISAASILAKVTRDREMAALDRQYPAYGFAQHKGYPTALHLARLAELGATDQHRRSFAPV 191 Query: 205 RNL 207 + + Sbjct: 192 KRV 194 >gi|113461500|ref|YP_719569.1| ribonuclease HII [Haemophilus somnus 129PT] gi|122945377|sp|Q0I4M6|RNH2_HAES1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|112823543|gb|ABI25632.1| RNase HII [Haemophilus somnus 129PT] Length = 211 Score = 157 bits (397), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 90/187 (48%), Positives = 120/187 (64%), Gaps = 2/187 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81 N+ +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I A+ Sbjct: 9 NVEFIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLKDSKKLSEKKRLLLAEEIKQKALA 68 Query: 82 -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 S+ A IDK NI AT+ A+ AVENL++ P L+DG IP+ LP A AVIKGD Sbjct: 69 WSLGRAEPAEIDKLNILHATMLAMQRAVENLKIQPHFVLVDGNRIPQ-LPMSAQAVIKGD 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+ I+AASI+AKV RD+ M ++YP+Y F H GYPT H + + + G +R + Sbjct: 128 SLVAEISAASILAKVARDQEMIELDRRYPEYAFAQHKGYPTKLHLERLAQFGVLPEYRRS 187 Query: 201 FRPLRNL 207 F P++ L Sbjct: 188 FAPVKKL 194 >gi|148826326|ref|YP_001291079.1| ribonuclease HII [Haemophilus influenzae PittEE] gi|166225190|sp|A5UD45|RNH2_HAEIE RecName: Full=Ribonuclease HII; Short=RNase HII gi|148716486|gb|ABQ98696.1| ribonuclease HII [Haemophilus influenzae PittEE] Length = 197 Score = 157 bits (397), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 86/182 (47%), Positives = 118/182 (64%), Gaps = 1/182 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L ++I A+ ++ Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALADEIKEKALAWALG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+KGDSI Sbjct: 71 RAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKGDSIVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR +F P+ Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAELGALPQHRRSFAPV 190 Query: 205 RN 206 + Sbjct: 191 KK 192 >gi|262166323|ref|ZP_06034060.1| ribonuclease HII [Vibrio mimicus VM223] gi|262026039|gb|EEY44707.1| ribonuclease HII [Vibrio mimicus VM223] Length = 206 Score = 157 bits (397), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 94/199 (47%), Positives = 119/199 (59%), Gaps = 7/199 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE+ A +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S KK Sbjct: 8 ELPPFEIPA-----GYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSEKK 62 Query: 68 REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L+ +I A+ S+ S Q ID+ NI +AT+ A+ AV L V P L+DG +P Sbjct: 63 RLALFPEIQEKALAWSVGRCSPQEIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNKVP 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP A AV+KGD I+AASIIAKV RD M K+YP +GF H GYPTA H Sbjct: 123 -TLPMDAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAAHFA 181 Query: 187 VIKEKGPSCIHRLTFRPLR 205 I++ G HR +F P++ Sbjct: 182 AIEQHGVIEQHRKSFGPVK 200 >gi|313904190|ref|ZP_07837569.1| Ribonuclease H [Eubacterium cellulosolvens 6] gi|313470992|gb|EFR66315.1| Ribonuclease H [Eubacterium cellulosolvens 6] Length = 218 Score = 157 bits (397), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 90/178 (50%), Positives = 117/178 (65%), Gaps = 4/178 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + G+DEVGRG LAGPV AA+IL + INDSKK+S K+REELY+ I AI +S+ Sbjct: 38 ICGVDEVGRGPLAGPVTTAAVILPKDARILYINDSKKLSEKRREELYDIIMEEAIAVSVK 97 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 S + ID+ NI +ATL+++ +V L V P +D +IP D+P +IKGD+ S Sbjct: 98 LNSWERIDEINILQATLESMRESVNTLDVRPDLVFVDAVTIPGIDIP--QIPIIKGDAKS 155 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASIIAKVTRDR+M+ + YP Y F S+ GY T KH + +KE GP IHR TF Sbjct: 156 QSIAAASIIAKVTRDRMMKEYDRLYPAYDFASNKGYGTKKHIEALKEFGPCPIHRRTF 213 >gi|170718385|ref|YP_001783609.1| ribonuclease HII [Haemophilus somnus 2336] gi|189043602|sp|B0UW63|RNH2_HAES2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|168826514|gb|ACA31885.1| Ribonuclease H [Haemophilus somnus 2336] Length = 211 Score = 157 bits (397), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 90/187 (48%), Positives = 120/187 (64%), Gaps = 2/187 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81 N+ +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I A+ Sbjct: 9 NVEFIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLKDSKKLSEKKRLLLAEEIKQKALA 68 Query: 82 -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 S+ A IDK NI AT+ A+ AVENL++ P L+DG IP+ LP A AVIKGD Sbjct: 69 WSLGRAEPAEIDKLNILHATMLAMQRAVENLKIQPHFVLVDGNRIPQ-LPMSAQAVIKGD 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+ I+AASI+AKV RD+ M ++YP+Y F H GYPT H + + + G +R + Sbjct: 128 SLVAEISAASILAKVARDQEMIELDRRYPEYAFAQHKGYPTKLHLERLAQFGVLPEYRRS 187 Query: 201 FRPLRNL 207 F P++ L Sbjct: 188 FAPVKKL 194 >gi|145627984|ref|ZP_01783785.1| lipid-A-disaccharide synthase [Haemophilus influenzae 22.1-21] gi|144979759|gb|EDJ89418.1| lipid-A-disaccharide synthase [Haemophilus influenzae 22.1-21] Length = 585 Score = 157 bits (397), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 86/181 (47%), Positives = 118/181 (65%), Gaps = 1/181 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I A+ ++ Sbjct: 399 IAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKALAWALG 458 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+KGDS+ Sbjct: 459 RAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKGDSLVA 518 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR +F P+ Sbjct: 519 EISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAEFGALPQHRRSFAPV 578 Query: 205 R 205 + Sbjct: 579 K 579 >gi|118579525|ref|YP_900775.1| ribonuclease HII [Pelobacter propionicus DSM 2379] gi|189043636|sp|A1AMZ7|RNH2_PELPD RecName: Full=Ribonuclease HII; Short=RNase HII gi|118502235|gb|ABK98717.1| RNase HII [Pelobacter propionicus DSM 2379] Length = 219 Score = 157 bits (397), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 92/196 (46%), Positives = 125/196 (63%), Gaps = 4/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE +A+ ++ +AGIDE GRGAL GPVV AA+IL G++DSKK+S + RE+L Sbjct: 20 FEQQAL--KQGHRVIAGIDEAGRGALCGPVVAAAVILPTGMAIPGVDDSKKLSPRTREQL 77 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +++I + A+ + I + Q ID+ NI +AT A+ AV+ L P LIDG S D+P Sbjct: 78 FDEIMARALSVGIGIGTPQLIDRINILQATRHAMAEAVDILAPRPDMLLIDGIST-IDVP 136 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + KGDS SL+IAAASIIAKV+RDR++ +P YGF SH GY A H + I+ Sbjct: 137 LPQKTITKGDSRSLTIAAASIIAKVSRDRMLTELDLLHPGYGFASHKGYGCASHMEAIRR 196 Query: 191 KGPSCIHRLTFRPLRN 206 GPS +HRLTFR +R Sbjct: 197 LGPSPVHRLTFRGVRE 212 >gi|254286446|ref|ZP_04961403.1| ribonuclease HII [Vibrio cholerae AM-19226] gi|150423395|gb|EDN15339.1| ribonuclease HII [Vibrio cholerae AM-19226] Length = 206 Score = 157 bits (397), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 92/200 (46%), Positives = 121/200 (60%), Gaps = 2/200 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 ++P EL +AG+DEVGRG L G VV AA+ILDP+ G+NDSKK+S KK Sbjct: 3 KKPSIELHPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPHRPIVGLNDSKKLSEKK 62 Query: 68 REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L+ +I A+ S+ S Q ID+ NI +AT+ A+ AV L++ P LIDG IP Sbjct: 63 RLALFPEIQEKALAWSVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNKIP 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + LP A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 123 K-LPMAAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAHFA 181 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 182 AIEQHGVIEQHRKSFGPVKR 201 >gi|227114701|ref|ZP_03828357.1| ribonuclease HII [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 198 Score = 157 bits (397), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 114/182 (62%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A+ S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPTRPIVGLADSKKLSEKRRLSLYDEIKEKALAWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L V+P LIDG P LP A AV+KGDS Sbjct: 73 RAEPEEIDQLNILHATMLAMQRAVAGLAVVPDFVLIDGNRCPA-LPMPAQAVVKGDSRVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M +++P YGF H GYPTA H + + G + HR +F P+ Sbjct: 132 EISAASIMAKVTRDREMVELDQRFPAYGFAQHKGYPTAFHLEKLAALGATEFHRRSFAPV 191 Query: 205 RN 206 R Sbjct: 192 RR 193 >gi|309973468|gb|ADO96669.1| Ribonuclease HII [Haemophilus influenzae R2846] Length = 197 Score = 157 bits (397), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 86/182 (47%), Positives = 118/182 (64%), Gaps = 1/182 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L ++I A+ ++ Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALADEIKEKALAWALG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+KGDSI Sbjct: 71 RAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKGDSIVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR +F P+ Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAEFGTLPQHRRSFAPV 190 Query: 205 RN 206 + Sbjct: 191 KK 192 >gi|157803394|ref|YP_001491943.1| ribonuclease HII [Rickettsia canadensis str. McKiel] gi|166226648|sp|A8EXS5|RNH2_RICCK RecName: Full=Ribonuclease HII; Short=RNase HII gi|157784657|gb|ABV73158.1| ribonuclease HII [Rickettsia canadensis str. McKiel] Length = 196 Score = 157 bits (397), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 92/193 (47%), Positives = 122/193 (63%), Gaps = 4/193 (2%) Query: 12 FELEAMVREKNM--WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 E++ + EK + VAGIDE GRG LAGPVV +A+++D NI GI DSKK+S +KRE Sbjct: 1 MEIDLLQYEKKYQEYIVAGIDEAGRGPLAGPVVASAVVIDNTNIITGIKDSKKLSKRKRE 60 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LYE+ITS+ I S + SH ID+ NI +AT A A NL + P L+DG D Sbjct: 61 LLYEQITSNYIWSTAIISHTEIDEINILEATKKACSIAAANLTIKPEIVLVDGNMQFND- 119 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + ++IKGD++SLSIAAASI+AK+TRDRLM ++P Y + + GY T +H Q I Sbjct: 120 -KRFVSIIKGDNLSLSIAAASIVAKITRDRLMLDLSTEFPQYLWYKNSGYGTKEHIQAIN 178 Query: 190 EKGPSCIHRLTFR 202 G S HR +FR Sbjct: 179 THGLSPYHRKSFR 191 >gi|317046996|ref|YP_004114644.1| ribonuclease H [Pantoea sp. At-9b] gi|316948613|gb|ADU68088.1| Ribonuclease H [Pantoea sp. At-9b] Length = 208 Score = 157 bits (397), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A+ S+ Sbjct: 12 IAGVDEVGRGPLVGAVVTAAVILDPAQPIIGLADSKKLSEKRRLALYDEIKEKALAWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L ++P LIDG P LP + AV+KGDS+ Sbjct: 72 RAEPEEIDQINILHATMLAMQRAVAGLPLVPDFVLIDGNRCPA-LPMPSQAVVKGDSLVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M +P YGF H GYPTA H + + + G + HR +F P+ Sbjct: 131 EISAASILAKVTRDREMAELDALFPQYGFAQHKGYPTALHMERLTQHGATPHHRRSFAPV 190 Query: 205 RN 206 RN Sbjct: 191 RN 192 >gi|16124634|ref|NP_419198.1| ribonuclease HII [Caulobacter crescentus CB15] gi|13421536|gb|AAK22366.1| ribonuclease HII [Caulobacter crescentus CB15] Length = 205 Score = 157 bits (397), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 91/182 (50%), Positives = 112/182 (61%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 PV G+DE GRG AGPV A+ILDP+ IP G+NDSKK+S K R L E+I AI + Sbjct: 11 PVCGVDEAGRGPWAGPVSAGAVILDPDRIPKGLNDSKKLSAKARAALEEEIKDVAISWCV 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 AS + I + NI A A+ AVE L V P AL+DG + LPC VIKGDS+S Sbjct: 71 GLASIEEIAQLNILHAAGLAMRRAVEGLAVTPAFALVDG-NYAFKLPCPVKTVIKGDSLS 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SIAAASI+AK RDR+M A YP YGF H GY H + ++ GPS IHRL + P Sbjct: 130 CSIAAASILAKEARDRIMIEADALYPGYGFAGHKGYHAKVHVEGLRRLGPSPIHRLGWAP 189 Query: 204 LR 205 ++ Sbjct: 190 VK 191 >gi|218710304|ref|YP_002417925.1| ribonuclease HII [Vibrio splendidus LGP32] gi|254808007|sp|B7VIQ4|RNH2_VIBSL RecName: Full=Ribonuclease HII; Short=RNase HII gi|218323323|emb|CAV19500.1| Ribonuclease HII [Vibrio splendidus LGP32] Length = 206 Score = 157 bits (397), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 91/201 (45%), Positives = 123/201 (61%), Gaps = 12/201 (5%) Query: 18 VREKNMWP----------VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 V+EK +P AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KK Sbjct: 3 VKEKKEFPPFEYPQGYQLFAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKK 62 Query: 68 REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L +I A+ S+ S Q ID+ NI +AT+ A+ A+ L V P ALIDG +P Sbjct: 63 RLALLPEIKEKALAWSVGRCSPQEIDELNILQATMVAMQRAIAGLSVQPDMALIDGNRVP 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 E LP A++KGD I+AASIIAKV RD+ M K +P++GF H GYPT H + Sbjct: 123 E-LPMAGLAIVKGDLRVAEISAASIIAKVVRDQEMEELDKLHPEFGFAKHKGYPTKAHFE 181 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I++ G + +R +F+P++ + Sbjct: 182 AIEKHGVTEHYRKSFKPVKRI 202 >gi|260902377|ref|ZP_05910772.1| ribonuclease HII [Vibrio parahaemolyticus AQ4037] gi|308110185|gb|EFO47725.1| ribonuclease HII [Vibrio parahaemolyticus AQ4037] gi|328474385|gb|EGF45190.1| ribonuclease HII [Vibrio parahaemolyticus 10329] Length = 211 Score = 157 bits (397), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 116/182 (63%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKR L +I A+ ++ Sbjct: 26 IAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEKALAWAVG 85 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S + ID+ NI +AT+ A+ A+ L+V P LIDG PE LP + AV+KGD Sbjct: 86 RCSPEEIDELNILQATMVAMQRAIAGLKVQPDLVLIDGNRCPE-LPMDSQAVVKGDLRVA 144 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKV RD+ M K+YP +GF H GYPT H + I++ G HR +F+P+ Sbjct: 145 EISAASIIAKVVRDQEMEELDKQYPQFGFAKHKGYPTKAHFEAIEQHGVISEHRKSFKPV 204 Query: 205 RN 206 + Sbjct: 205 KK 206 >gi|308185754|ref|YP_003929885.1| Ribonuclease HII [Pantoea vagans C9-1] gi|308056264|gb|ADO08436.1| Ribonuclease HII [Pantoea vagans C9-1] Length = 208 Score = 157 bits (397), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK+S K+R LY++I A+ S+ Sbjct: 12 IAGVDEVGRGPLVGAVVTAAVILDPANPITGLADSKKLSEKRRLSLYDEIKEKALAWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L + P LIDG P LP + AV+KGDS+ Sbjct: 72 RAEPEEIDQLNILHATMLAMQRAVAGLSIQPDYVLIDGNRCPA-LPMPSQAVVKGDSLVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKV+RDR M +P YGF H GYPTA H + + + G + HR +F P+ Sbjct: 131 EISAASIIAKVSRDREMAELDLLFPQYGFAQHKGYPTALHMEKLTQYGATPHHRRSFAPV 190 Query: 205 RN 206 RN Sbjct: 191 RN 192 >gi|91223487|ref|ZP_01258752.1| ribonuclease HII [Vibrio alginolyticus 12G01] gi|269966265|ref|ZP_06180354.1| ribonuclease HII [Vibrio alginolyticus 40B] gi|91191573|gb|EAS77837.1| ribonuclease HII [Vibrio alginolyticus 12G01] gi|269829180|gb|EEZ83425.1| ribonuclease HII [Vibrio alginolyticus 40B] Length = 211 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 89/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L G VV AA+ILDPNN G+NDSKK++ KKR L +I A+ ++ Sbjct: 26 VAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLTEKKRMALLPEIKEKALAWAVG 85 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S + ID+ NI +AT+ A+ AV LQV P LIDG PE LP A AV+KGD Sbjct: 86 RCSPEEIDQLNILQATMVAMQRAVAGLQVQPDLVLIDGNRCPE-LPMDAQAVVKGDLRVA 144 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKV RD+ M K +P +GF H GYPT H + I++ G HR +F+P+ Sbjct: 145 EISAASIIAKVVRDQEMEELDKLHPQFGFAKHKGYPTKAHFEAIEQHGVISEHRKSFKPV 204 Query: 205 RN 206 + Sbjct: 205 KK 206 >gi|315613173|ref|ZP_07888083.1| ribonuclease HII [Streptococcus sanguinis ATCC 49296] gi|315314735|gb|EFU62777.1| ribonuclease HII [Streptococcus sanguinis ATCC 49296] Length = 259 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 93/203 (45%), Positives = 125/203 (61%), Gaps = 9/203 (4%) Query: 12 FELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 LE M+ EK ++ +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI Sbjct: 52 LRLETMLSYEKELYKQGLTLIAGVDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPK 111 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KK E+Y + A+ I I +Q ID+ NI++AT A+ A+ L P LID Sbjct: 112 KKHLEIYHAVQDQALAIGIGIMDNQVIDQVNIYEATKLAMKEAISQLNPQPDHLLIDAMK 171 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + DL A+IKGD+ SLSIAAASI+AKVTRD LM+ +YP Y F ++ GY TAKH Sbjct: 172 L--DLSISQTAIIKGDANSLSIAAASIVAKVTRDELMKEYDNQYPGYDFTANAGYGTAKH 229 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 + +++ G + IHR +F P++ L Sbjct: 230 LEELEKLGVTPIHRTSFEPVKTL 252 >gi|321315372|ref|YP_004207659.1| ribonuclease HII [Bacillus subtilis BSn5] gi|320021646|gb|ADV96632.1| ribonuclease HII [Bacillus subtilis BSn5] Length = 255 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 86/194 (44%), Positives = 123/194 (63%), Gaps = 3/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + R K +AG+DEVGRG LAGPVV +A+IL G+ DSKK+S KKREE YE Sbjct: 63 ERLARNKGFRLMAGVDEVGRGPLAGPVVASAVILPEECEILGLTDSKKLSEKKREEYYEL 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A+ + I ID+ NI++A+ A+ A+++L P L+D ++P D QA Sbjct: 123 IMKEALAVGIGIVEATVIDEINIYEASKMAMVKAIQDLSDTPDYLLVDAMTLPLD-TAQA 181 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ S+SIAAA+ IAKVTRDR+M + YP YGF+ + GY T +H + + GP Sbjct: 182 -SIIKGDAKSVSIAAAACIAKVTRDRMMSAYAETYPMYGFEKNKGYGTKEHLEALAAYGP 240 Query: 194 SCIHRLTFRPLRNL 207 + +HR TF P+++ Sbjct: 241 TELHRKTFAPVQSF 254 >gi|315652839|ref|ZP_07905813.1| ribonuclease HII [Eubacterium saburreum DSM 3986] gi|315485041|gb|EFU75449.1| ribonuclease HII [Eubacterium saburreum DSM 3986] Length = 214 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 93/195 (47%), Positives = 128/195 (65%), Gaps = 10/195 (5%) Query: 14 LEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKK 67 LE M +N + +AGIDE GRG LAGPVV AA+IL P +I PF +NDSKK++ K+ Sbjct: 16 LEGMKEFENKYSDFEFIAGIDEAGRGPLAGPVVAAAVIL-PKDIFLPF-LNDSKKVTEKR 73 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R+ L+++I A+ I AS+ ID+ NI +AT +A+ A++ L+ P L+D IP Sbjct: 74 RDVLFDRIKQEALAYGIGIASNVLIDEINILQATYEAMREAIKKLKKTPDILLVDAVHIP 133 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D+ + ++KGD+ S++IAAASI+AKVTRDRLM K YP+YGF + GY TAKH + Sbjct: 134 -DITIRQLGIVKGDARSINIAAASILAKVTRDRLMLEYDKIYPEYGFAYNKGYGTAKHIE 192 Query: 187 VIKEKGPSCIHRLTF 201 +KE G IHR TF Sbjct: 193 ALKEYGACDIHRRTF 207 >gi|332307491|ref|YP_004435342.1| Ribonuclease H [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174820|gb|AEE24074.1| Ribonuclease H [Glaciecola agarilytica 4H-3-7+YE-5] Length = 197 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 86/181 (47%), Positives = 118/181 (65%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILDP+ G+ DSKKIS KKR L++ I +A+ +S+ Sbjct: 5 IAGVDEVGRGPLVGDVVTAAVILDPSKPIAGLADSKKISEKKRLALFDLIMQNALSVSVG 64 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID+ NI AT+ A+ AV+ L P +DG P+ + AV+KGDS+ Sbjct: 65 RASPEEIDELNILHATMLAMTRAVQGLATQPTFVRVDGNRCPK-WNYASEAVVKGDSLYA 123 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKVTRD M H+KYP+YGF H GYPT H + + E GP +R++F+P+ Sbjct: 124 EISAASIIAKVTRDAEMTALHEKYPEYGFGQHKGYPTKAHLEKLAEFGPLPEYRMSFKPV 183 Query: 205 R 205 + Sbjct: 184 Q 184 >gi|297617100|ref|YP_003702259.1| ribonuclease H [Syntrophothermus lipocalidus DSM 12680] gi|297144937|gb|ADI01694.1| Ribonuclease H [Syntrophothermus lipocalidus DSM 12680] Length = 222 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 86/196 (43%), Positives = 125/196 (63%), Gaps = 2/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + K + VAG DEVGRG +AGPVV AA+IL P+ G+NDSK++ KKRE L Sbjct: 15 EYEYGLYAKGIRLVAGTDEVGRGPIAGPVVAAAVILPPDFEVPGVNDSKQVPPKKREWLS 74 Query: 73 EKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +KI +A+ ++ Y+D+ NI AT +A+ A+ L + P ++DG IPE L Sbjct: 75 DKIKENALTWAVGILFPPYLDRINILNATWEAMRLALGGLAIPPEHVIVDGWPIPE-LGV 133 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++KGDS+S+S+A ASI+AKV RDR+M + YP YGF H GY T +H + ++ K Sbjct: 134 TQTPLVKGDSLSISVACASILAKVERDRIMTALDEVYPGYGFARHKGYATREHLRALEVK 193 Query: 192 GPSCIHRLTFRPLRNL 207 GP IHR++F P++++ Sbjct: 194 GPCPIHRISFEPIKSM 209 >gi|148981147|ref|ZP_01816309.1| ribonuclease HII [Vibrionales bacterium SWAT-3] gi|145960974|gb|EDK26299.1| ribonuclease HII [Vibrionales bacterium SWAT-3] Length = 206 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 117/182 (64%), Gaps = 2/182 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85 AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKR L +I A+ S+ Sbjct: 22 AGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEKALAWSVGR 81 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S Q ID+ NI +AT+ A+ A+ L V P ALIDG +PE LP AV+KGD Sbjct: 82 CSPQEIDELNILQATMVAMQRAIAGLSVQPDMALIDGNRVPE-LPMAGIAVVKGDLRVAE 140 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASIIAKV RD+ M K +P++GF H GYPT H + I++ G + +R +F+P++ Sbjct: 141 ISAASIIAKVVRDQEMEELDKLHPEFGFAKHKGYPTKAHFEAIEKHGVTEHYRKSFKPVK 200 Query: 206 NL 207 + Sbjct: 201 RI 202 >gi|145632423|ref|ZP_01788158.1| ribonuclease HII [Haemophilus influenzae 3655] gi|144987330|gb|EDJ93860.1| ribonuclease HII [Haemophilus influenzae 3655] Length = 197 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 85/182 (46%), Positives = 118/182 (64%), Gaps = 1/182 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L ++I A+ ++ Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALADEIKEKALAWALG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+KGDS+ Sbjct: 71 RAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKGDSLVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR +F P+ Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRRSFAPV 190 Query: 205 RN 206 + Sbjct: 191 KK 192 >gi|157151005|ref|YP_001450488.1| ribonuclease HII [Streptococcus gordonii str. Challis substr. CH1] gi|189043666|sp|A8AXH8|RNH2_STRGC RecName: Full=Ribonuclease HII; Short=RNase HII gi|157075799|gb|ABV10482.1| Ribonuclease HII (RNase HII) [Streptococcus gordonii str. Challis substr. CH1] Length = 254 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 91/203 (44%), Positives = 128/203 (63%), Gaps = 9/203 (4%) Query: 12 FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 L+ M+R EK ++ +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI Sbjct: 52 LRLDQMIRYEKELYQSGYQAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPK 111 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KK +E+Y+ + A+ + I IDK NI++AT A+ A+ L + P LID Sbjct: 112 KKHQEIYQAVMDKALAVGIGLMDSDIIDKVNIYEATKLAMKEALSKLPLKPDYLLIDAMK 171 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + ++P ++ +IKGD+ SLSIAAASI+AKVTRDRLM K++P Y F + GY T +H Sbjct: 172 LDVEIPQES--IIKGDANSLSIAAASIVAKVTRDRLMADYDKEFPGYAFAQNAGYGTKRH 229 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 + ++ G S IHR TF P++++ Sbjct: 230 LEGLEHYGVSPIHRKTFEPVKSM 252 >gi|304396658|ref|ZP_07378539.1| Ribonuclease H [Pantoea sp. aB] gi|304356167|gb|EFM20533.1| Ribonuclease H [Pantoea sp. aB] Length = 208 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK+S K+R LY++I A+ S+ Sbjct: 12 IAGVDEVGRGPLVGAVVTAAVILDPANPITGLADSKKLSEKRRLALYDEIKEKALAWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L + P LIDG P LP + AV+KGDS+ Sbjct: 72 RAEPEEIDQLNILHATMLAMQRAVAGLSIQPDYVLIDGNRCPA-LPMPSQAVVKGDSLVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKV+RDR M +P YGF H GYPTA H + + + G + HR +F P+ Sbjct: 131 EISAASIIAKVSRDREMAELDLLFPQYGFAQHKGYPTALHMEKLTQYGATPHHRRSFAPV 190 Query: 205 RN 206 RN Sbjct: 191 RN 192 >gi|320107359|ref|YP_004182949.1| Ribonuclease H [Terriglobus saanensis SP1PR4] gi|319925880|gb|ADV82955.1| Ribonuclease H [Terriglobus saanensis SP1PR4] Length = 248 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 90/209 (43%), Positives = 134/209 (64%), Gaps = 15/209 (7%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----G 56 + C+ PE+ L +V +AG+DEVGRGAL GPVV AA+IL P + + G Sbjct: 21 LVCSDAPEQALRHLGYLV-------IAGVDEVGRGALCGPVVAAAVIL-PEEMGWLATKG 72 Query: 57 INDSKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIP 115 + DSK+++ ++REEL +I S A+ SI++ + ID+ NI++A+ A+ AV+ L V P Sbjct: 73 LRDSKQLTREQREELDAEIRSVALAASIAAVDAETIDRVNIYQASRMAMQMAVDALTVRP 132 Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 LID I + PC +I GDS+SLSIAAAS++AKV RD +MR +++P YG +S Sbjct: 133 DHLLIDAMRISD--PCAQTRLIYGDSLSLSIAAASVVAKVYRDAMMRKFAEEHPQYGMES 190 Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 H GY T +H++ +KE GP+ +HR +F P+ Sbjct: 191 HKGYGTPEHRRALKEHGPTPLHRRSFAPV 219 >gi|90022228|ref|YP_528055.1| ribonuclease HII [Saccharophagus degradans 2-40] gi|123090288|sp|Q21HI6|RNH2_SACD2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|89951828|gb|ABD81843.1| Ribonuclease H [Saccharophagus degradans 2-40] Length = 199 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 88/181 (48%), Positives = 117/181 (64%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG LAG VV AA+IL ++ G+ DSKKI+ KKR+ L++ I A+ I+ Sbjct: 11 VAGVDEVGRGPLAGDVVAAAVILGEDHGIEGLADSKKITEKKRDALFDVIQERAVSFCIA 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID+ NI A+L A+ AVE L + P+ +DG +P+ A AV+KGDS+ Sbjct: 71 RASVEEIDELNILHASLLAMKRAVEGLNIQPQYIYVDGNKLPK-WTYSAEAVVKGDSLVE 129 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M +KYP YG H GYPT H +K GP+ IHR +F P+ Sbjct: 130 EISAASILAKVTRDREMVALDEKYPGYGLAGHKGYPTKVHMDALKRLGPTIIHRKSFAPV 189 Query: 205 R 205 R Sbjct: 190 R 190 >gi|229829016|ref|ZP_04455085.1| hypothetical protein GCWU000342_01101 [Shuttleworthia satelles DSM 14600] gi|229792179|gb|EEP28293.1| hypothetical protein GCWU000342_01101 [Shuttleworthia satelles DSM 14600] Length = 260 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 90/192 (46%), Positives = 119/192 (61%), Gaps = 6/192 (3%) Query: 15 EAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 E MV E+ W VAG+DEVGRG LAGP+V AA+IL + GINDSKK+S KKREE Sbjct: 60 ELMVFEREAWQSCQYVAGMDEVGRGPLAGPLVTAAVILPRGHRILGINDSKKVSAKKREE 119 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY +I A+ + I S ID+ N+ +AT +A+ AV L P L D ++P L Sbjct: 120 LYRQIMEEALAVGIGMNSPGRIDQINVLQATYEAMREAVSQLDPAPELVLNDAVTVP-GL 178 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + +I GD+ S+SI AASI+AKVTRD +M K YP YGF + GY TA H + ++ Sbjct: 179 LVRQIPIIHGDARSISIGAASIVAKVTRDHMMEDYDKTYPGYGFAKNKGYGTADHIRALR 238 Query: 190 EKGPSCIHRLTF 201 + GP+ IHR +F Sbjct: 239 KMGPTPIHRRSF 250 >gi|238897797|ref|YP_002923476.1| RNAse HII [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259494067|sp|C4K435|RNH2_HAMD5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|229465554|gb|ACQ67328.1| RNAse HII [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 200 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 91/181 (50%), Positives = 115/181 (63%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG LAGPVV AA+ILDP N G+ DSK +S KKR LYE+IT A+ S+ Sbjct: 13 IAGVDEVGRGPLAGPVVTAAVILDPKNPIIGLADSKTLSKKKRMALYEEITHKALAWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI ATL A+ AV L + LIDG P L + +++KGDS Sbjct: 73 RAESKEIDEINIFHATLLAMQRAVNALGIKTDHVLIDGHICP-ILSIPSSSIVKGDSKVP 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M K +P YGF H GYPTA H + + GP+ HR +FRP+ Sbjct: 132 EISAASILAKVTRDREMEALDKVFPGYGFAQHKGYPTAFHLEKLALLGPTEQHRRSFRPV 191 Query: 205 R 205 R Sbjct: 192 R 192 >gi|332366882|gb|EGJ44623.1| ribonuclease HII [Streptococcus sanguinis SK1059] Length = 254 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 91/204 (44%), Positives = 129/204 (63%), Gaps = 9/204 (4%) Query: 11 HFELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 LE M+R EK ++ +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI Sbjct: 51 ELRLEQMLRYEKELYKAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIP 110 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KK +E+Y+ + A+ + I ++ ID+ NI++AT A+ A+ L + P LID Sbjct: 111 KKKHDEIYQAVLDKALAVGIGLIDNEIIDRVNIYEATKLAMKEALSKLCLKPDYLLIDAM 170 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + ++P ++ +IKGD+ SLSIAAASI+AKVTRD+LM K+YP Y F + GY T Sbjct: 171 KLDVEIPQES--IIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKS 228 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H Q ++ G + IHR TF P++++ Sbjct: 229 HLQGLERHGVTPIHRKTFEPVKSM 252 >gi|315498150|ref|YP_004086954.1| ribonuclease h [Asticcacaulis excentricus CB 48] gi|315416162|gb|ADU12803.1| Ribonuclease H [Asticcacaulis excentricus CB 48] Length = 207 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 94/186 (50%), Positives = 116/186 (62%), Gaps = 8/186 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA----II 81 V G+DE GRG AGP+ VAA+ILDP IP GI DSKK+S K+R L I ++A +I Sbjct: 14 VCGVDEAGRGPCAGPLCVAAVILDPARIPPGIADSKKLSEKQRFALEPDIKAAALAWSVI 73 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 IS+A ID HNI +AT+ + HAVE L P ALIDG P L A AV+KGD Sbjct: 74 EISAAD---IDCHNILRATMMGMTHAVEALSPQPIHALIDGNRCPP-LAIPATAVVKGDD 129 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SLSIAAASI+AK RDR+M YP YGF SH GY H I+ GPS IHR+++ Sbjct: 130 KSLSIAAASILAKTARDRIMIEMDALYPIYGFKSHKGYQAEAHIAAIRLHGPSPIHRMSW 189 Query: 202 RPLRNL 207 +R++ Sbjct: 190 ATVRSV 195 >gi|296876487|ref|ZP_06900538.1| ribonuclease H [Streptococcus parasanguinis ATCC 15912] gi|296432480|gb|EFH18276.1| ribonuclease H [Streptococcus parasanguinis ATCC 15912] Length = 255 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 92/198 (46%), Positives = 127/198 (64%), Gaps = 7/198 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREE 70 +E E R M +AG+DEVGRG LAGPVV AA+IL IP G+NDSKKI K +E Sbjct: 60 YEKECYAR--GMELIAGVDEVGRGPLAGPVVAAAVILPKACKIP-GLNDSKKIPKSKHKE 116 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 +YE + +A+ I I +Q ID+ NI++AT A+ A+ L+ P+ LID + DL Sbjct: 117 IYEAVLQNAVAIGIGIKDNQVIDQVNIYEATKLAMMEAIGQLEPQPQHLLIDAMKL--DL 174 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P ++IKGD+ SLSIAAASI+AKVTRD++M K+YP Y F + GY TAKH + Sbjct: 175 PISQISIIKGDANSLSIAAASIVAKVTRDQMMEEFDKEYPGYDFAQNAGYGTAKHLAGLD 234 Query: 190 EKGPSCIHRLTFRPLRNL 207 + G + IHR +F P++++ Sbjct: 235 KLGVTPIHRRSFEPVKSM 252 >gi|238853072|ref|ZP_04643464.1| ribonuclease HII [Lactobacillus gasseri 202-4] gi|238834320|gb|EEQ26565.1| ribonuclease HII [Lactobacillus gasseri 202-4] Length = 250 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 89/194 (45%), Positives = 128/194 (65%), Gaps = 4/194 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E +K+ VAG+DEVGRG LAGPVV AA+IL N +NDSKK+S KKR+EL Sbjct: 55 FSYEKKFGQKSQL-VAGVDEVGRGPLAGPVVTAAVILPHNFDLIDVNDSKKLSPKKRKEL 113 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + KI + A+ +S+ A++ ID+ NI++A A+ HAV+ L+V P + L+D ++P ++P Sbjct: 114 FPKILAKAVSVSVGLANNDVIDRINIYEADRLAMAHAVQGLKVKPDALLVDAMNVPLNIP 173 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD+ S SIAAASI+AKV RD LM + YP+Y F + GY T +H + +K+ Sbjct: 174 --QVKLIHGDAKSNSIAAASIVAKVFRDNLMDAYGEVYPEYDFKHNAGYGTREHMEALKK 231 Query: 191 KGPSCIHRLTFRPL 204 GP+ IHR +F P+ Sbjct: 232 YGPTPIHRRSFAPV 245 >gi|260775272|ref|ZP_05884169.1| ribonuclease HII [Vibrio coralliilyticus ATCC BAA-450] gi|260608453|gb|EEX34618.1| ribonuclease HII [Vibrio coralliilyticus ATCC BAA-450] Length = 205 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 91/200 (45%), Positives = 122/200 (61%), Gaps = 12/200 (6%) Query: 17 MVREKNMWP----------VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 M +EK P +AG+DEVGRG L G VV AA+ILDPNN G+NDSKK++ K Sbjct: 1 MTKEKKELPPFEYPQGYRLIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLTEK 60 Query: 67 KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KR L +I A+ S+ S + ID+ NI +AT+ A+ A+E L+V P ALIDG + Sbjct: 61 KRLALLPEIKEKALAWSVGRCSPEEIDQLNILQATMVAMQRAIEGLEVAPDFALIDGNRV 120 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P+ L A AV+KGD I+AASIIAKV RD+ M K +P +GF H GYPT H Sbjct: 121 PQ-LNMDAQAVVKGDMRVAEISAASIIAKVVRDQEMEELDKLHPQFGFAKHKGYPTKAHF 179 Query: 186 QVIKEKGPSCIHRLTFRPLR 205 + I++ G HR +F+P++ Sbjct: 180 EAIEQHGVIDQHRKSFKPVK 199 >gi|220934349|ref|YP_002513248.1| Ribonuclease H [Thioalkalivibrio sp. HL-EbGR7] gi|254808004|sp|B8GQ66|RNH2_THISH RecName: Full=Ribonuclease HII; Short=RNase HII gi|219995659|gb|ACL72261.1| Ribonuclease H [Thioalkalivibrio sp. HL-EbGR7] Length = 202 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 90/182 (49%), Positives = 118/182 (64%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG LAGPVV AA+ILDP G+ DSKK+S +RE L +I ++ ++ Sbjct: 12 VAGVDEVGRGPLAGPVVAAAVILDPARPIDGLKDSKKLSPARREALDVQIRERSLAFALG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + ID+ NI +A+L A+ AVE L P AL+DG P+ L A AVIKGDS Sbjct: 72 LCTPAEIDRINILQASLLAMQRAVEALSHRPEMALVDGNRCPK-LTMTAHAVIKGDSRVP 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASIIAKV RDRLM +++P YG SH+GYPT H + ++ GPS HRL+F P+ Sbjct: 131 AISAASIIAKVHRDRLMLALDEQHPGYGLGSHMGYPTPVHLEALERLGPSPCHRLSFAPV 190 Query: 205 RN 206 R Sbjct: 191 RR 192 >gi|319947076|ref|ZP_08021310.1| ribonuclease HII [Streptococcus australis ATCC 700641] gi|319747124|gb|EFV99383.1| ribonuclease HII [Streptococcus australis ATCC 700641] Length = 256 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 86/204 (42%), Positives = 129/204 (63%), Gaps = 9/204 (4%) Query: 12 FELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 LE M+ EK ++ +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI Sbjct: 52 LRLEKMLTYEKELYAQGIQLIAGVDEVGRGPLAGPVVAAAVILPENCKILGLNDSKKIPK 111 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 K + +Y+ + A+ + I +Q ID+ NI++AT A+ A++ L P+ LID Sbjct: 112 SKHQAIYQAVLDQALSVGIGVKDNQVIDQVNIYEATKLAMLEAIQELDQQPQHLLIDAMK 171 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + D+P ++IKGD+ SLSIAAASI+AKVTRD++M ++YP Y F + GY T KH Sbjct: 172 L--DVPISQTSIIKGDANSLSIAAASIVAKVTRDQMMAAYDQEYPGYDFGQNAGYGTTKH 229 Query: 185 QQVIKEKGPSCIHRLTFRPLRNLS 208 + +++ G + IHR +F P+++++ Sbjct: 230 LEGLEKHGVTPIHRRSFEPIKSMT 253 >gi|303271053|ref|XP_003054888.1| ribonuclease HII [Micromonas pusilla CCMP1545] gi|226462862|gb|EEH60140.1| ribonuclease HII [Micromonas pusilla CCMP1545] Length = 256 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 85/203 (41%), Positives = 123/203 (60%), Gaps = 5/203 (2%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 P R H E M ++ V G+DE GRG LAGPVV AA + + + INDSK+++ + Sbjct: 46 PSRAH---EQMYWDQGKKIVCGVDEAGRGPLAGPVVAAACVFPEDLVIDAINDSKQMTEE 102 Query: 67 KREELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 REE+YE++ + + S+ H+ ID NI +AT+ A+ +VE L L+DG Sbjct: 103 DREEVYEQLMENPEVLKSVCVIDHKEIDDINILEATMKAMRKSVEGLPTKADWVLVDGNR 162 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +PE L +A A++KGD+ S+ IAAAS++AKVTRDR+M K++P+YGF H GY H Sbjct: 163 VPEPLKGRAEAIVKGDAKSVCIAAASVLAKVTRDRMMVEIAKEHPEYGFAEHKGYGVKSH 222 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 I E GP HR+TF P++ + Sbjct: 223 MAAIHEHGPCPYHRMTFAPMKYM 245 >gi|227879127|ref|ZP_03997011.1| ribonuclease HII [Lactobacillus crispatus JV-V01] gi|256843160|ref|ZP_05548648.1| ribonuclease HII [Lactobacillus crispatus 125-2-CHN] gi|256850241|ref|ZP_05555670.1| ribonuclease HII [Lactobacillus crispatus MV-1A-US] gi|262046367|ref|ZP_06019329.1| ribonuclease HII [Lactobacillus crispatus MV-3A-US] gi|293380236|ref|ZP_06626317.1| ribonuclease HII [Lactobacillus crispatus 214-1] gi|312977295|ref|ZP_07789043.1| ribonuclease HII [Lactobacillus crispatus CTV-05] gi|227861284|gb|EEJ68919.1| ribonuclease HII [Lactobacillus crispatus JV-V01] gi|256614580|gb|EEU19781.1| ribonuclease HII [Lactobacillus crispatus 125-2-CHN] gi|256712878|gb|EEU27870.1| ribonuclease HII [Lactobacillus crispatus MV-1A-US] gi|260573238|gb|EEX29796.1| ribonuclease HII [Lactobacillus crispatus MV-3A-US] gi|290923203|gb|EFE00125.1| ribonuclease HII [Lactobacillus crispatus 214-1] gi|310895726|gb|EFQ44792.1| ribonuclease HII [Lactobacillus crispatus CTV-05] Length = 250 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 89/193 (46%), Positives = 123/193 (63%), Gaps = 7/193 (3%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 EK W VAG+DEVGRG LAGPVV AA+I+D + +NDSKK+S +KR +LY KI Sbjct: 58 EKKFWEKGQLVAGVDEVGRGPLAGPVVTAAVIIDQDFDLLDVNDSKKLSPEKRLKLYPKI 117 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 + A+ + I S + ID+ NI++A A+ AV L V P + L+D ++P +LP Sbjct: 118 LAEAVSVGIGVKSAEVIDQINIYEADRQAMAQAVRALDVKPNALLVDAMNVPVNLP--QV 175 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +IKGD+ S SIAAASI+AKV RD+LM + YP Y F + GY T +H + +K+ GP+ Sbjct: 176 KLIKGDAKSNSIAAASIVAKVFRDQLMDDYDRIYPQYCFHHNAGYGTKEHIEALKKYGPT 235 Query: 195 CIHRLTFRPLRNL 207 IHR TF P+ + Sbjct: 236 PIHRKTFAPVSDF 248 >gi|261211364|ref|ZP_05925652.1| ribonuclease HII [Vibrio sp. RC341] gi|260839319|gb|EEX65945.1| ribonuclease HII [Vibrio sp. RC341] Length = 206 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 93/199 (46%), Positives = 121/199 (60%), Gaps = 7/199 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE+ A +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S KK Sbjct: 8 ELPPFEIPA-----GYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIEGLNDSKKLSEKK 62 Query: 68 REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L+ +I A+ ++ S Q ID+ NI +AT+ A+ AV L V P L+DG +P Sbjct: 63 RLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNKVP 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + LP +A AV+KGD I+AASIIAKV RD M K+YP +GF H GYPTA H Sbjct: 123 Q-LPMEAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAVHFA 181 Query: 187 VIKEKGPSCIHRLTFRPLR 205 I++ G HR +F P++ Sbjct: 182 AIEQHGVIEQHRKSFGPVK 200 >gi|229843904|ref|ZP_04464045.1| ribonuclease HII [Haemophilus influenzae 6P18H1] gi|229812898|gb|EEP48586.1| ribonuclease HII [Haemophilus influenzae 6P18H1] Length = 197 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 85/182 (46%), Positives = 118/182 (64%), Gaps = 1/182 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L ++I A+ ++ Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALADEIKEKALAWALG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+KGDS+ Sbjct: 71 RAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKGDSLVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR +F P+ Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAELGALPQHRRSFAPV 190 Query: 205 RN 206 + Sbjct: 191 KK 192 >gi|270264806|ref|ZP_06193070.1| ribonuclease HII [Serratia odorifera 4Rx13] gi|270041104|gb|EFA14204.1| ribonuclease HII [Serratia odorifera 4Rx13] Length = 197 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 116/182 (63%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A+ S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPARPIIGLADSKKLSEKRRLALYDEIVEKALSWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L + P LIDG P+ LP ++ AV+KGDS Sbjct: 73 RAEPEEIDRLNILHATMLAMQRAVAGLHIAPDMVLIDGNRCPK-LPMRSQAVVKGDSRVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M +++PDYGF H GYPTA H + + G + HR +F P+ Sbjct: 132 EISAASILAKVTRDREMTELDREFPDYGFAQHKGYPTAFHLERLAVLGATEHHRRSFAPV 191 Query: 205 RN 206 R Sbjct: 192 RR 193 >gi|307067682|ref|YP_003876648.1| ribonuclease HII [Streptococcus pneumoniae AP200] gi|306409219|gb|ADM84646.1| Ribonuclease HII [Streptococcus pneumoniae AP200] Length = 259 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 91/204 (44%), Positives = 129/204 (63%), Gaps = 9/204 (4%) Query: 11 HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 + LE+M+ EK ++ +AGIDEVG G LAGPVV AA+IL N G+NDSKKI Sbjct: 51 NLRLESMLSYEKELYKQGLTLIAGIDEVGHGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KK E+++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + DLP ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAK Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAK 228 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H + + + G + IHR +F P+++L Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252 >gi|86146875|ref|ZP_01065194.1| ribonuclease HII [Vibrio sp. MED222] gi|85835327|gb|EAQ53466.1| ribonuclease HII [Vibrio sp. MED222] Length = 206 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 91/201 (45%), Positives = 123/201 (61%), Gaps = 12/201 (5%) Query: 18 VREKNMWP----------VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 V+EK +P AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KK Sbjct: 3 VKEKKEFPPFEYPQGYQLFAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKK 62 Query: 68 REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L +I A+ S+ S Q ID+ NI +AT+ A+ A+ L V P ALIDG +P Sbjct: 63 RLALLPEIKEKALAWSVGRCSPQEIDELNILQATMVAMQRAIAGLSVQPDIALIDGNRVP 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 E LP A++KGD I+AASIIAKV RD+ M K +P++GF H GYPT H + Sbjct: 123 E-LPMAGLAIVKGDLRVAEISAASIIAKVVRDQEMEELDKLHPEFGFAKHKGYPTKAHFE 181 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I++ G + +R +F+P++ + Sbjct: 182 AIEKHGVTEHYRKSFKPVKRI 202 >gi|291546334|emb|CBL19442.1| Ribonuclease HII [Ruminococcus sp. SR1/5] Length = 251 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 90/177 (50%), Positives = 118/177 (66%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG LAGPVV A+IL + +NDSKK++ KKREELY+ I A+ + I Sbjct: 71 LCGIDEVGRGPLAGPVVACAVILPKDCDILWLNDSKKLTAKKREELYDVILEGAVSVGIG 130 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID+ NI +AT +A+ AV L V P+ L D +IPE + +IKGD+ S+ Sbjct: 131 MASPERIDEINILQATYEAMRQAVSRLSVQPQLLLNDAVTIPE-IQIPQVPIIKGDAKSV 189 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASI+AKVTRDR+M K P+YGF S+ GY +A H + +K+ GPS IHR TF Sbjct: 190 SIAAASIVAKVTRDRMMEEYDKVLPEYGFASNKGYGSAAHIEALKKYGPSPIHRKTF 246 >gi|149025509|ref|ZP_01836442.1| ribonuclease HII [Streptococcus pneumoniae SP23-BS72] gi|147929381|gb|EDK80378.1| ribonuclease HII [Streptococcus pneumoniae SP23-BS72] Length = 259 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 90/204 (44%), Positives = 129/204 (63%), Gaps = 9/204 (4%) Query: 11 HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 + LE+M+ EK ++ + GIDEVGRG LAGPVV AA+IL N G+NDSKKI Sbjct: 51 NLRLESMLSYEKELYKQGLTLIVGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KK E+++ + ++ I I +Q ID+ NI++AT A+ A+ L P LID Sbjct: 111 KKKHLEIFQAVQDQSLSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + DLP ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAK Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAK 228 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H + + + G + IHR +F P+++L Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252 >gi|148998411|ref|ZP_01825853.1| ribonuclease HII [Streptococcus pneumoniae SP11-BS70] gi|147755808|gb|EDK62853.1| ribonuclease HII [Streptococcus pneumoniae SP11-BS70] Length = 260 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 91/204 (44%), Positives = 129/204 (63%), Gaps = 9/204 (4%) Query: 11 HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 + LE+M+ EK ++ +AGIDEVG G LAGPVV AA+IL N G+NDSKKI Sbjct: 51 NLRLESMLSYEKELYKQGLTLIAGIDEVGHGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KK E+++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + DLP ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAK Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAK 228 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H + + + G + IHR +F P+++L Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252 >gi|320529141|ref|ZP_08030233.1| ribonuclease HII [Selenomonas artemidis F0399] gi|320138771|gb|EFW30661.1| ribonuclease HII [Selenomonas artemidis F0399] Length = 255 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 91/186 (48%), Positives = 120/186 (64%), Gaps = 8/186 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI---IS 82 VAG+DE GRG LAGPV VAA IL +NDSKK+S K R EL+E+IT AI ++ Sbjct: 72 VAGVDEAGRGPLAGPVAVAAAILPQELYLPRLNDSKKLSAKVRAELFEEITEKAIAYHVT 131 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDS 141 + A+ ID+ NI +AT +Y AV L P L+D +P+ +P Q+ +IKGD+ Sbjct: 132 LIDAAE--IDRINILQATRRGMYEAVAALTPAPEEVLVDAVELPQLRMPVQS--IIKGDA 187 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 S+SIAAASI+AKVTRDRLM +YP YGF H GY TA+H I+ +G + IHR TF Sbjct: 188 KSVSIAAASILAKVTRDRLMERYDTEYPGYGFAGHKGYGTAEHIAAIRAQGVTPIHRRTF 247 Query: 202 RPLRNL 207 P+R++ Sbjct: 248 EPIRSM 253 >gi|332360875|gb|EGJ38681.1| ribonuclease HII [Streptococcus sanguinis SK49] Length = 254 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 90/204 (44%), Positives = 129/204 (63%), Gaps = 9/204 (4%) Query: 11 HFELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 LE M+R EK ++ +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI Sbjct: 51 ELRLEQMLRYEKELYKTGFRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIP 110 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KK +++Y+ + A+ + + ++ ID+ NI++AT A+ A+ L + P LID Sbjct: 111 KKKHQDIYQAVMDKALAVGVGLIDNEIIDQVNIYEATKLAMKEALSKLCLKPDYLLIDAM 170 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + D+P ++ +IKGD+ SLSIAAASI+AKVTRD+LM K+YP Y F + GY T Sbjct: 171 KLDIDIPQES--IIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKS 228 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H Q ++ G + IHR TF P++++ Sbjct: 229 HLQGLERHGVTPIHRKTFEPVKSM 252 >gi|312173373|emb|CBX81627.1| ribonuclease HII [Erwinia amylovora ATCC BAA-2158] Length = 207 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILDP+ G+ DSKK+S K+R LY++I A+ S+ Sbjct: 12 IAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLGDSKKLSEKRRLALYDEIKDKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L + P LIDG P L + AV+KGDS+ Sbjct: 72 RAEPEEIDRLNILHATMLAMQRAVAGLHLTPDFVLIDGNRCPA-LAMPSRAVVKGDSLVQ 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I AASI+AKVTRDR M ++YP YGF H GYPTA H + + + G + HR +F P+ Sbjct: 131 EIGAASIMAKVTRDREMCELDQQYPQYGFARHKGYPTAVHMEKLAQFGVTPQHRRSFAPV 190 Query: 205 RN 206 RN Sbjct: 191 RN 192 >gi|261822585|ref|YP_003260691.1| ribonuclease HII [Pectobacterium wasabiae WPP163] gi|261606598|gb|ACX89084.1| Ribonuclease H [Pectobacterium wasabiae WPP163] Length = 198 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 86/182 (47%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A+ S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPTRPIVGLADSKKLSEKRRLALYDEINEKALAWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L ++P LIDG P LP +A AV+KGDS Sbjct: 73 RAEPEEIDQLNILHATMLAMQRAVAGLSIVPDFVLIDGNRCPA-LPMRAQAVVKGDSRVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M +++P YGF H GYPTA H + + G + HR +F P+ Sbjct: 132 EISAASIMAKVTRDREMVELDQRFPAYGFAQHKGYPTAFHLEKLAALGATEFHRRSFAPV 191 Query: 205 RN 206 + Sbjct: 192 KR 193 >gi|187735061|ref|YP_001877173.1| Ribonuclease H [Akkermansia muciniphila ATCC BAA-835] gi|187425113|gb|ACD04392.1| Ribonuclease H [Akkermansia muciniphila ATCC BAA-835] Length = 214 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 91/209 (43%), Positives = 124/209 (59%), Gaps = 10/209 (4%) Query: 8 ERPH----FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKK 62 E+PH FE+EA R VAG+DE GRG LAGPVV A+IL G+NDSK+ Sbjct: 3 EKPHPDMSFEMEA--RASGFLCVAGVDEAGRGPLAGPVVAGAVILPVLAEELTGLNDSKQ 60 Query: 63 ISHKKREELYEKI--TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 ++ KRE L+ + A+ S+ AS + ID+ NI +AT A+ AVE L + L+ Sbjct: 61 LTAAKRERLFLALLECEQAVCSVGVASVEEIDRFNILRATHLAMARAVEGLALRADFCLV 120 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG + + LP A++KGD SLSIAAAS++AKVTRDR+M A YP YGF H GY Sbjct: 121 DGLPV-KGLPVPHRAIVKGDGRSLSIAAASVLAKVTRDRMMMEADASYPQYGFAKHKGYG 179 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209 T H + ++ GP +HR +F P+ + + Sbjct: 180 TKAHMEALRRHGPCPLHRRSFAPVSQMEL 208 >gi|50119985|ref|YP_049152.1| ribonuclease HII [Pectobacterium atrosepticum SCRI1043] gi|73917607|sp|Q6D8C9|RNH2_ERWCT RecName: Full=Ribonuclease HII; Short=RNase HII gi|49610511|emb|CAG73956.1| ribonuclease HII [Pectobacterium atrosepticum SCRI1043] Length = 198 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 86/183 (46%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSK++S K+R LY++I A+ S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPTRPIVGLADSKQLSEKRRLSLYDEIKEKALAWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L ++P LIDG P LP A AV+KGDS Sbjct: 73 RAEPEEIDQLNILHATMLAMQRAVAALAIVPDFVLIDGNRCPA-LPMPAQAVVKGDSRVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M +++PDYGF H GYPTA H + + G + HR +F P+ Sbjct: 132 EISAASIMAKVTRDREMVELDQRFPDYGFAQHKGYPTAFHLEKLAALGATEFHRRSFAPV 191 Query: 205 RNL 207 + + Sbjct: 192 KRV 194 >gi|306825207|ref|ZP_07458549.1| ribonuclease HII [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432643|gb|EFM35617.1| ribonuclease HII [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 259 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 91/204 (44%), Positives = 128/204 (62%), Gaps = 9/204 (4%) Query: 11 HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 +F LE+M+ EK ++ +AG+DEVGRG LAGPVV AA+IL G+NDSKKI Sbjct: 51 NFRLESMLSYEKELYKQGLTLIAGVDEVGRGPLAGPVVAAAVILPKKCKIRGLNDSKKIP 110 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KK E+Y+ + A+ I I + ID+ NI++AT A+ A+ L P LID Sbjct: 111 KKKHLEIYQAVQDQALAIGIGIKDNHIIDQVNIYEATKLAMKEAISQLSPQPEHLLIDAM 170 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + +LP A+IKGD+ SLSIAAASI+AKVTRD +M+ +YP Y F ++ GY TAK Sbjct: 171 KL--ELPISQTAIIKGDANSLSIAAASIVAKVTRDNIMKDYDNQYPGYDFRANAGYGTAK 228 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H + +++ G + IHR +F P++ L Sbjct: 229 HLEGLEKLGVTQIHRTSFEPVKTL 252 >gi|262282236|ref|ZP_06060004.1| ribonuclease HII [Streptococcus sp. 2_1_36FAA] gi|262261527|gb|EEY80225.1| ribonuclease HII [Streptococcus sp. 2_1_36FAA] Length = 254 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 92/203 (45%), Positives = 127/203 (62%), Gaps = 9/203 (4%) Query: 12 FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 LE M+R EK ++ +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI Sbjct: 52 LRLEQMLRYEKELYQAGYQAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPK 111 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KK E+Y+ + + A+ + I + ID+ NI++AT A+ A+ L + P LID Sbjct: 112 KKHNEIYQAVMNKALTVGIGLMDNDIIDQVNIYEATKLAMKEALSKLFLKPDYLLIDAMK 171 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + D+P + +IKGD+ SLSIAAASI+AKVTRDRLM K++P Y F + GY T H Sbjct: 172 LDVDIPQDS--IIKGDANSLSIAAASIVAKVTRDRLMADYDKEFPGYAFAQNAGYGTKSH 229 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 + ++ G S IHR TF P++++ Sbjct: 230 LEGLEHYGVSPIHRKTFEPVKSM 252 >gi|322376562|ref|ZP_08051055.1| ribonuclease HII [Streptococcus sp. M334] gi|321282369|gb|EFX59376.1| ribonuclease HII [Streptococcus sp. M334] Length = 259 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 90/204 (44%), Positives = 130/204 (63%), Gaps = 9/204 (4%) Query: 11 HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 + LE+M+ EK ++ +AG+DEVGRG LAGPVV AA+IL N +NDSKKI Sbjct: 51 NLRLESMLSYEKELYKQGLTLIAGVDEVGRGPLAGPVVSAAVILPQNCKIKDLNDSKKIP 110 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KK E+++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIMDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + DLP ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAK Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKDYDQQFPGYDFTANAGYGTAK 228 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H + +++ G + IHR +F P+++L Sbjct: 229 HLEGLEKLGVTPIHRTSFEPVKSL 252 >gi|77408047|ref|ZP_00784795.1| ribonuclease HII [Streptococcus agalactiae COH1] gi|77173312|gb|EAO76433.1| ribonuclease HII [Streptococcus agalactiae COH1] Length = 253 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 93/210 (44%), Positives = 130/210 (61%), Gaps = 13/210 (6%) Query: 9 RPHFELEA-----MVREKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN 58 + H + EA +V EK ++ +AGIDEVGRG LAGPVV AA+IL PN +N Sbjct: 45 QSHLDEEARLEQMLVYEKKLYIEHINLIAGIDEVGRGPLAGPVVAAAVILPPNCKIKHLN 104 Query: 59 DSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117 DSKKI KK +E+Y+ I A+ + I Q ID NI++AT A+ AV +L V+P Sbjct: 105 DSKKIPKKKHQEIYQNILDQALAVGIGIQDSQCIDDINIYEATKHAMIDAVSHLSVVPEH 164 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 LID + DLP +IKGD+ SLSIAAASI+AKVTRD++M KYP + F + Sbjct: 165 LLIDAMVL--DLPIPQTKIIKGDANSLSIAAASIVAKVTRDKIMSDYDSKYPGFAFSKNA 222 Query: 178 GYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 GY T +H + +++ G + IHR +F P++++ Sbjct: 223 GYGTKEHLEGLQKYGITPIHRKSFEPIKSM 252 >gi|327460345|gb|EGF06682.1| ribonuclease HII [Streptococcus sanguinis SK1057] Length = 254 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 89/203 (43%), Positives = 129/203 (63%), Gaps = 9/203 (4%) Query: 12 FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 LE M+R EK ++ +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI Sbjct: 52 LRLEQMLRYEKELYQAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPK 111 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KK +++Y+ + A+ + I + ID+ NI++AT A+ A+ L++ LID Sbjct: 112 KKHQDIYQAVMDKALAVGIGLMDSEIIDQVNIYEATKLAMKEALSKLRLKSDYLLIDAMK 171 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + D+P ++ +IKGD+ SLSIAAASI+AKVTRD+LM K++P Y F + GY T H Sbjct: 172 LDVDIPQES--IIKGDANSLSIAAASIVAKVTRDKLMTDYDKEFPGYDFAQNAGYGTKSH 229 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 Q +++ G + IHR TF P++++ Sbjct: 230 LQGLEQNGVTPIHRKTFEPVKSM 252 >gi|291484157|dbj|BAI85232.1| ribonuclease HII [Bacillus subtilis subsp. natto BEST195] Length = 255 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 85/194 (43%), Positives = 122/194 (62%), Gaps = 3/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + R K +AG+DEVGRG LAGPVV +A+IL G+ DSKK+S KKREE YE Sbjct: 63 ERLARNKGFRLIAGVDEVGRGPLAGPVVASAVILPEECEILGLTDSKKLSEKKREEYYEL 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A+ + I ID+ NI++A+ A+ A+++L P L+D ++P D QA Sbjct: 123 IMKEALAVGIGIVEATVIDEINIYEASKMAMVKAIQDLSGTPDYLLVDAMTLPLD-TAQA 181 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ S+SIAA + IAKVTRDR+M + YP YGF+ + GY T +H + + GP Sbjct: 182 -SIIKGDAKSVSIAAGACIAKVTRDRMMSAYAETYPMYGFEKNKGYGTKEHLEALAAYGP 240 Query: 194 SCIHRLTFRPLRNL 207 + +HR TF P+++ Sbjct: 241 TELHRKTFAPVQSF 254 >gi|302384139|ref|YP_003819962.1| ribonuclease H [Brevundimonas subvibrioides ATCC 15264] gi|302194767|gb|ADL02339.1| Ribonuclease H [Brevundimonas subvibrioides ATCC 15264] Length = 213 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 88/199 (44%), Positives = 118/199 (59%), Gaps = 2/199 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P LE ++ + V G+DE GRG AGPV AA+IL+ +++P GI+DSK ++ +RE Sbjct: 13 PTMALETLLASRVGGRVCGVDEAGRGPWAGPVSAAAVILNADDLPVGIDDSKALTAARRE 72 Query: 70 ELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L +I + A+ + AS + ID NI AT A+ A+E L V P +AL+DG + Sbjct: 73 ALEIEIKARAVAWGVGFASVEEIDALNILHATGLAMCRAIEALSVSPVAALVDG-NYRFR 131 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LPC V+ GD +SLSIAAASI+AK RDRLM YP YGF H GY H Q + Sbjct: 132 LPCDVETVVGGDGLSLSIAAASILAKTARDRLMIEMDDLYPGYGFAGHKGYNAPVHSQAL 191 Query: 189 KEKGPSCIHRLTFRPLRNL 207 + GP IHR T+ P+R L Sbjct: 192 QTMGPCPIHRRTWAPIRAL 210 >gi|225858944|ref|YP_002740454.1| ribonuclease HII [Streptococcus pneumoniae 70585] gi|254807989|sp|C1C7C8|RNH2_STRP7 RecName: Full=Ribonuclease HII; Short=RNase HII gi|225721844|gb|ACO17698.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae 70585] Length = 259 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 91/204 (44%), Positives = 129/204 (63%), Gaps = 9/204 (4%) Query: 11 HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 + LE+M+ EK ++ +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI Sbjct: 51 NLRLESMLSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KK E+++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + DLP ++IKGD+ SLSIAAASI+AKVTRD LM+ +++ Y F ++ GY TAK Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFSGYDFATNAGYGTAK 228 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H + + + G + IHR +F P+++L Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252 >gi|99082490|ref|YP_614644.1| ribonuclease HII [Ruegeria sp. TM1040] gi|122984106|sp|Q1GD84|RNH2_SILST RecName: Full=Ribonuclease HII; Short=RNase HII gi|99038770|gb|ABF65382.1| RNase HII [Ruegeria sp. TM1040] Length = 229 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 84/198 (42%), Positives = 125/198 (63%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P LE + + +AG+DEVGRG LAGPV AA++LD ++P G+NDSKK++ ++R Sbjct: 28 PDLSLEEAAQARGYTRIAGVDEVGRGPLAGPVTAAAVVLDLADLPEGLNDSKKLTPRRRA 87 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L +I + A +++ AS + ID HNI +A+ A+ AV L P LIDG IP L Sbjct: 88 ALEPEIMARASYAVAHASVEEIDHHNILRASHLAMERAVAALDPQPDYLLIDGNLIPRAL 147 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A AV+KGD SLSIAAASI+AK RDR+M +++P YG++ + GYP+ +H+ + Sbjct: 148 HIPAEAVVKGDGRSLSIAAASILAKEARDRIMVDLAQQFPGYGWERNAGYPSKQHRDALI 207 Query: 190 EKGPSCIHRLTFRPLRNL 207 + G + HR +F+P+ + Sbjct: 208 KIGVTPHHRRSFKPVHKI 225 >gi|319939095|ref|ZP_08013459.1| ribonuclease HII [Streptococcus anginosus 1_2_62CV] gi|319812145|gb|EFW08411.1| ribonuclease HII [Streptococcus anginosus 1_2_62CV] Length = 260 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 96/201 (47%), Positives = 131/201 (65%), Gaps = 9/201 (4%) Query: 14 LEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LE M+R EK ++ +AGIDEVGRG LAGPVV AA+IL N G+NDSKK+ KK Sbjct: 54 LEQMLRYEKELYATGCQYIAGIDEVGRGPLAGPVVAAAVILPKNYKIKGLNDSKKVPKKK 113 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 +E+Y+++ AI + I +Q ID+ NI++AT A+ AV NL+V P+ LID + Sbjct: 114 HKEIYQEVLKQAISVGIGIKDNQVIDEVNIYEATKLAMLEAVGNLEVAPQHLLIDAMQL- 172 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D+ ++IKGD+ SLSIAAASI+AKVTRDR+M YP Y F +VGY T H + Sbjct: 173 -DVQVPQTSIIKGDANSLSIAAASIVAKVTRDRMMTNYELTYPGYDFAHNVGYGTQHHLE 231 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 +K KG + IHR TF P++++ Sbjct: 232 GLKRKGITPIHRTTFEPIKSM 252 >gi|300361596|ref|ZP_07057773.1| ribonuclease H [Lactobacillus gasseri JV-V03] gi|300354215|gb|EFJ70086.1| ribonuclease H [Lactobacillus gasseri JV-V03] Length = 250 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 87/190 (45%), Positives = 125/190 (65%), Gaps = 7/190 (3%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 EK W VAG+DEVGRG LAGPVV AA+IL N +NDSKK+S KKR+ L+ +I Sbjct: 58 EKEFWQKNQLVAGVDEVGRGPLAGPVVTAAVILPHNFDLIDVNDSKKLSPKKRKALFPQI 117 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 + A+ +S+ A++ ID+ NI++A A+ HAV+ L+V P + L+D ++P ++P Sbjct: 118 LAKAVSVSVGLANNDVIDRINIYEADRLAMAHAVQGLKVKPAALLVDAMNVPLNIP--QI 175 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +I GD+ S SIAAASI+AKV RD LM + YP+Y F + GY T +H + +K+ GP+ Sbjct: 176 KLIHGDAKSNSIAAASIVAKVFRDNLMDAYGEVYPEYDFKHNAGYGTREHMEALKKYGPT 235 Query: 195 CIHRLTFRPL 204 IHR +F P+ Sbjct: 236 PIHRRSFAPV 245 >gi|225856834|ref|YP_002738345.1| ribonuclease HII [Streptococcus pneumoniae P1031] gi|254807993|sp|C1CKQ7|RNH2_STRZP RecName: Full=Ribonuclease HII; Short=RNase HII gi|225725074|gb|ACO20926.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae P1031] Length = 259 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 91/204 (44%), Positives = 129/204 (63%), Gaps = 9/204 (4%) Query: 11 HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 + LE+M+ EK ++ +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI Sbjct: 51 NLRLESMLSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KK E+++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + DLP ++IKGD+ SLSIAAASI+AKVTRD LM+ +++ Y F ++ GY TAK Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFSGYDFATNAGYGTAK 228 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H + + + G + IHR +F P+++L Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252 >gi|332073501|gb|EGI83980.1| ribonuclease HII [Streptococcus pneumoniae GA17570] Length = 260 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 91/204 (44%), Positives = 129/204 (63%), Gaps = 9/204 (4%) Query: 11 HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 + LE+M+ EK ++ +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI Sbjct: 51 NLRLESMLSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KK E+++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + DLP ++IKGD+ SLSIAAASI+AKVTRD LM+ +++ Y F ++ GY TAK Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFSGYDFATNAGYGTAK 228 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H + + + G + IHR +F P+++L Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252 >gi|114570742|ref|YP_757422.1| RNase HII [Maricaulis maris MCS10] gi|122315504|sp|Q0AMK3|RNH2_MARMM RecName: Full=Ribonuclease HII; Short=RNase HII gi|114341204|gb|ABI66484.1| RNase HII [Maricaulis maris MCS10] Length = 218 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 85/184 (46%), Positives = 115/184 (62%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81 N +AG+DE GRG L+GPVV AA+ILDP G+ DSK +S ++R EL+ I ++A + Sbjct: 20 NTVRIAGVDEAGRGPLSGPVVAAAVILDPTRPITGLGDSKALSERRRRELFRLIRANAWV 79 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I A ID+ NI AT+ A+ AV L V P L+DG +P LPC A A+IKGD+ Sbjct: 80 GIGIAEPAEIDRLNILHATMAAMRRAVARLPVRPTLVLVDGNRLPPGLPCPAEAIIKGDA 139 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I AASIIAK RD LM A +++P YGF+ H GYP+A H+ ++ G IHR ++ Sbjct: 140 KEACIGAASIIAKTVRDDLMEQAARRFPGYGFEGHKGYPSAAHKAALETSGACPIHRRSY 199 Query: 202 RPLR 205 P+R Sbjct: 200 APVR 203 >gi|292489213|ref|YP_003532100.1| ribonuclease HII [Erwinia amylovora CFBP1430] gi|292898553|ref|YP_003537922.1| ribonuclease HII [Erwinia amylovora ATCC 49946] gi|291198401|emb|CBJ45508.1| ribonuclease HII [Erwinia amylovora ATCC 49946] gi|291554647|emb|CBA22333.1| Ribonuclease HII [Erwinia amylovora CFBP1430] Length = 211 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILDP+ G+ DSKK+S K+R LY++I A+ S+ Sbjct: 12 IAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLGDSKKLSEKRRLALYDEIKDKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L + P LIDG P L + AV+KGDS+ Sbjct: 72 RAEPEEIDRLNILHATMLAMQRAVAGLHLTPDFVLIDGNRCPA-LAMPSRAVVKGDSLVQ 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I AASI+AKVTRDR M ++YP YGF H GYPTA H + + + G + HR +F P+ Sbjct: 131 EIGAASIMAKVTRDREMCELDQQYPQYGFARHKGYPTALHMEKLAQFGVTPQHRRSFAPV 190 Query: 205 RN 206 RN Sbjct: 191 RN 192 >gi|148994505|ref|ZP_01823685.1| ribonuclease HII [Streptococcus pneumoniae SP9-BS68] gi|168483218|ref|ZP_02708170.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC1873-00] gi|168488985|ref|ZP_02713184.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae SP195] gi|147927175|gb|EDK78211.1| ribonuclease HII [Streptococcus pneumoniae SP9-BS68] gi|172043371|gb|EDT51417.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC1873-00] gi|183572489|gb|EDT93017.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae SP195] gi|332201627|gb|EGJ15697.1| ribonuclease HII [Streptococcus pneumoniae GA47368] Length = 259 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 91/204 (44%), Positives = 129/204 (63%), Gaps = 9/204 (4%) Query: 11 HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 + LE+M+ EK ++ +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI Sbjct: 51 NLRLESMLSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KK E+++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID Sbjct: 111 KKKHLEIFQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + DLP ++IKGD+ SLSIAAASI+AKVTRD LM+ +++ Y F ++ GY TAK Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFSGYDFATNAGYGTAK 228 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H + + + G + IHR +F P+++L Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252 >gi|121604674|ref|YP_982003.1| ribonuclease HII [Polaromonas naphthalenivorans CJ2] gi|189043638|sp|A1VN54|RNH2_POLNA RecName: Full=Ribonuclease HII; Short=RNase HII gi|120593643|gb|ABM37082.1| RNase HII [Polaromonas naphthalenivorans CJ2] Length = 208 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 84/180 (46%), Positives = 120/180 (66%), Gaps = 2/180 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DE GRG LAGPVV AA+ILDP N G+ DSKK++ +RE+LY++I + A+ SI+ Sbjct: 25 MAGVDEAGRGPLAGPVVAAAVILDPFNPIMGLADSKKLTALRREKLYDEIQAKALCCSIA 84 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A+ + ID NI +AT+ A+ AVE L++ P L+DG +P L A A++KGD++ Sbjct: 85 LATVEEIDSLNILQATMLAMKRAVEGLRLKPNKVLVDGNRLPT-LKILAEAIVKGDALVP 143 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKV RDR H +YP YGF H GY TA+H +++ G HR +F P+ Sbjct: 144 AISAASILAKVYRDRWCGDYHLQYPQYGFAGHKGYGTAEHLAALRQHGACPQHRKSFAPV 203 >gi|288941772|ref|YP_003444012.1| Ribonuclease H [Allochromatium vinosum DSM 180] gi|288897144|gb|ADC62980.1| Ribonuclease H [Allochromatium vinosum DSM 180] Length = 206 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 89/180 (49%), Positives = 112/180 (62%), Gaps = 2/180 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DE GRG LAGPV AA+ILDP GI DSKK+S +RE L I A+ S++ Sbjct: 13 IAGVDEAGRGPLAGPVCAAAVILDPARPIAGIGDSKKLSPARRERLEPLIRDQALAWSVA 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID+ NI +ATL A+ AVE+LQ+ P ALIDG P+ L A A++ GD Sbjct: 73 WASAEEIDRLNILQATLLAMRRAVESLQIRPVKALIDGNRCPQ-LDIAAEAIVGGDGSVP 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I AASI+AKV RDR M + P YGF H GYPT +H I+ GP HRL+F PL Sbjct: 132 AIGAASILAKVARDRFMLELDAECPGYGFAKHKGYPTREHLNAIERLGPCRWHRLSFAPL 191 >gi|327462197|gb|EGF08524.1| ribonuclease HII [Streptococcus sanguinis SK1] Length = 254 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 90/203 (44%), Positives = 129/203 (63%), Gaps = 9/203 (4%) Query: 12 FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 LE M+R EK ++ +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI Sbjct: 52 LRLEQMLRYEKELYQTGFRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPK 111 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KK +++Y+ + A+ + + ++ ID+ NI++AT A+ A+ L + P LID Sbjct: 112 KKHQDIYQAVMDKALAVGVGLIDNEIIDQVNIYEATKLAMKEALSKLCLKPDYLLIDAMK 171 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + D+P ++ +IKGD+ SLSIAAASI+AKVTRD+LM K+YP Y F + GY T H Sbjct: 172 LDIDIPQES--IIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSH 229 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 Q ++ G + IHR TF P++++ Sbjct: 230 LQGLERHGVTPIHRKTFEPVKSM 252 >gi|258627364|ref|ZP_05722148.1| ribonuclease HII [Vibrio mimicus VM603] gi|258580402|gb|EEW05367.1| ribonuclease HII [Vibrio mimicus VM603] Length = 206 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 93/199 (46%), Positives = 119/199 (59%), Gaps = 7/199 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE+ A +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S KK Sbjct: 8 ELPPFEIPA-----GYALIAGVDEVGRGPLVGDVVTAAVILDPNRAIVGLNDSKKLSEKK 62 Query: 68 REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L+ +I A+ S+ S + ID+ NI +AT+ A+ AV L V P L+DG +P Sbjct: 63 RLALFPEIQEKALAWSVGRCSPREIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNKVP 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP A AV+KGD I+AASIIAKV RD M K+YP +GF H GYPTA H Sbjct: 123 -TLPMDAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAAHFA 181 Query: 187 VIKEKGPSCIHRLTFRPLR 205 I++ G HR +F P++ Sbjct: 182 AIEQHGVIEQHRKSFGPVK 200 >gi|299770949|ref|YP_003732975.1| ribonuclease HII [Acinetobacter sp. DR1] gi|298701037|gb|ADI91602.1| ribonuclease HII [Acinetobacter sp. DR1] Length = 188 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 84/183 (45%), Positives = 120/183 (65%), Gaps = 5/183 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A+ SI+ Sbjct: 3 IAGVDEAGRGPLVGSVVAAAVILDPNNPIEGLNDSKKLTEKKREKLFIEIQEKALAWSIA 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--PCQAFAVIKGDSI 142 A+H ID+ NI +AT A+ AV+ L+ P+ ++DG IP+ + PC+A ++ GD+ Sbjct: 63 EATHAEIDELNILQATFLAMQRAVDGLKAQPQKVIVDGNQIPKGIIIPCEA--IVGGDAS 120 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M ++YP +GF H GYPT H + I G HR ++ Sbjct: 121 HPEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIATHGVIDQHRRSYA 180 Query: 203 PLR 205 P++ Sbjct: 181 PVK 183 >gi|160933523|ref|ZP_02080911.1| hypothetical protein CLOLEP_02369 [Clostridium leptum DSM 753] gi|156867400|gb|EDO60772.1| hypothetical protein CLOLEP_02369 [Clostridium leptum DSM 753] Length = 325 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 91/191 (47%), Positives = 117/191 (61%), Gaps = 4/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +E EA+ K V G+DE GRG LAGPV AA+IL P G+NDSKK++ KKRE L Sbjct: 6 YEKEAI--SKGYANVCGVDEAGRGPLAGPVYAAAVILPPGLEIEGVNDSKKLTEKKREAL 63 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + +I A+ I+SAS + IDK NI AT A+ AVE L V ALIDG +P LP Sbjct: 64 FPEIKEKALAYCIASASEKEIDKLNILNATYLAMARAVEGLPVKADYALIDGNRMPR-LP 122 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++KGD +S+SIA ASI+AKVTRD +M ++YP Y F H GY T H +I+ Sbjct: 123 IPGETIVKGDGLSMSIACASILAKVTRDHVMMEWDQRYPQYQFAKHKGYGTKLHMDLIRR 182 Query: 191 KGPSCIHRLTF 201 GP +HR +F Sbjct: 183 YGPCELHRQSF 193 >gi|16078669|ref|NP_389488.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. 168] gi|221309481|ref|ZP_03591328.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. 168] gi|221313806|ref|ZP_03595611.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318730|ref|ZP_03600024.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. JH642] gi|221323001|ref|ZP_03604295.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. SMY] gi|6685901|sp|O31744|RNH2_BACSU RecName: Full=Ribonuclease HII; Short=RNase HII gi|2633978|emb|CAB13479.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. 168] Length = 255 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 85/194 (43%), Positives = 122/194 (62%), Gaps = 3/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + R K +AG+DEVGRG LAGPVV +A+IL G+ DSKK+S KKREE YE Sbjct: 63 ERLARNKGFRLIAGVDEVGRGPLAGPVVASAVILPEECEILGLTDSKKLSEKKREEYYEL 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A+ + I ID+ NI++A+ A+ A+++L P L+D ++P D QA Sbjct: 123 IMKEALAVGIGIVEATVIDEINIYEASKMAMVKAIQDLSDTPDYLLVDAMTLPLD-TAQA 181 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ S+SIAA + IAKVTRDR+M + YP YGF+ + GY T +H + + GP Sbjct: 182 -SIIKGDAKSVSIAAGACIAKVTRDRMMSAYAETYPMYGFEKNKGYGTKEHLEALAAYGP 240 Query: 194 SCIHRLTFRPLRNL 207 + +HR TF P+++ Sbjct: 241 TELHRKTFAPVQSF 254 >gi|119774290|ref|YP_927030.1| ribonuclease HII [Shewanella amazonensis SB2B] gi|189043657|sp|A1S4Q4|RNH2_SHEAM RecName: Full=Ribonuclease HII; Short=RNase HII gi|119766790|gb|ABL99360.1| Ribonuclease H [Shewanella amazonensis SB2B] Length = 206 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 91/181 (50%), Positives = 116/181 (64%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDPN G+NDSKK++ KKR+ LY +I A+ +S+ Sbjct: 20 VAGVDEVGRGPLVGDVVTAAVILDPNKPIAGLNDSKKLTEKKRDALYLEIMDKALAVSVG 79 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID+ NI AT+ A+ AV L ++P S L+DG P D A AV+KGD + Sbjct: 80 RASPTEIDELNILHATMLAMQRAVAGLTIVPESVLVDGNRTP-DFGVPAHAVVKGDGLIA 138 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AAS+IAKVTRDR M +YP YGF H GYPT H + I G HR +FRP+ Sbjct: 139 AISAASVIAKVTRDREMGELDARYPQYGFAGHKGYPTKAHFEAISAHGVLAEHRRSFRPV 198 Query: 205 R 205 R Sbjct: 199 R 199 >gi|225874361|ref|YP_002755820.1| ribonuclease HII [Acidobacterium capsulatum ATCC 51196] gi|225794400|gb|ACO34490.1| ribonuclease HII [Acidobacterium capsulatum ATCC 51196] Length = 236 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 88/192 (45%), Positives = 124/192 (64%), Gaps = 5/192 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYE 73 E R++ +AG+DEVGRGAL GPVV AA+IL P+ I G+ DSK++ RE L Sbjct: 30 ERQARQQGATAIAGVDEVGRGALFGPVVAAAVIL-PSRIRLEGLRDSKQLRVSDRERLAT 88 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 ++ + AI ++I+ + ID+ NI++AT A+ AVE LQ P LID I D PC Sbjct: 89 EVHACAIAVAIAEVDVETIDRINIYQATRLAMLRAVELLQPEPDHLLIDAMRI--DHPCA 146 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++I GDS+SLSIAAAS++AKV RDRL+ H YP+YG D+H GY T +H+ + + G Sbjct: 147 QTSIIYGDSLSLSIAAASVVAKVYRDRLVCELHALYPEYGLDAHKGYGTPRHKAALLQYG 206 Query: 193 PSCIHRLTFRPL 204 P+ +HR +F P+ Sbjct: 207 PTPLHRKSFAPV 218 >gi|239631517|ref|ZP_04674548.1| ribonuclease HII [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525982|gb|EEQ64983.1| ribonuclease HII [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 252 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 88/192 (45%), Positives = 125/192 (65%), Gaps = 8/192 (4%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 E+ +W VAG+DEVGRG LAGPVV AA+IL P++ + +NDSK+++ +R LY I Sbjct: 60 ERQLWGTYEYVAGLDEVGRGPLAGPVVTAAVIL-PHHFQWPVNDSKQLTAHERNVLYPHI 118 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 + AI + I A ++ ID+ NI+ AT A+ AV++L+V P L+D +P DLP + Sbjct: 119 LTEAIAVGIGVADNRTIDRENIYHATELAMAQAVDHLRVAPECLLVDAMHVPVDLPQKRL 178 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 IKGD+ S+SIAAASI+AKV RDRLM++ K YP Y F ++GY T H + G + Sbjct: 179 --IKGDANSISIAAASIVAKVIRDRLMKMYDKIYPGYDFKDNMGYGTKAHLAGLAAHGVT 236 Query: 195 CIHRLTFRPLRN 206 IHR +F P+R+ Sbjct: 237 PIHRRSFGPVRD 248 >gi|56460771|ref|YP_156052.1| ribonuclease HII [Idiomarina loihiensis L2TR] gi|81363280|sp|Q5QZK7|RNH2_IDILO RecName: Full=Ribonuclease HII; Short=RNase HII gi|56179781|gb|AAV82503.1| Ribonuclease HII [Idiomarina loihiensis L2TR] Length = 187 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 86/183 (46%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + G DE GRG +AGPVV AA+ILDP+N G+NDSKK+S KKRE+L +I A+ +I+ Sbjct: 2 ICGTDEAGRGPIAGPVVAAAVILDPDNPIEGLNDSKKLSEKKREKLSLEIKEKALYWAIA 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + I+ NI A++ A+ AVE L V P L+DG +PE L A A++ GD+ Sbjct: 62 QSDPDEIEAINILWASMKAMQRAVEALPVKPDMVLVDGNRVPE-LKVPAKAIVGGDASEQ 120 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AKV RDR M H+ YP Y FD H Y T KH +++++ GP IHR F P+ Sbjct: 121 CIAAASILAKVERDRQMLKWHELYPQYEFDKHKAYGTPKHLELLEKHGPCPIHRKGFNPV 180 Query: 205 RNL 207 + L Sbjct: 181 KRL 183 >gi|309389199|gb|ADO77079.1| Ribonuclease H [Halanaerobium praevalens DSM 2228] Length = 271 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 83/193 (43%), Positives = 125/193 (64%), Gaps = 4/193 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 +LE +K + GIDE GRG LAGPVV AA++LDP N +G++DSKK++ KRE L+ Sbjct: 74 QLEKEYSQKGYQVIIGIDEAGRGPLAGPVVAAAVLLDPQNKIYGLDDSKKLNLTKRENLF 133 Query: 73 EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVEN----LQVIPRSALIDGRSIPED 128 ++I + A + I A+ IDK+NI +AT A+ AV++ LQ P LIDG ++ Sbjct: 134 KQIKAKAKVGIGQATSSEIDKYNIREATFTAMKRAVKDLLPKLQKQPDLLLIDGNAVIPG 193 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L + ++I GD+ +IAAASIIAKV+RD+L+ +++P+Y +S+ GY TA+H + Sbjct: 194 LTVEQESIIDGDAKVNNIAAASIIAKVSRDKLIYKYAEEFPEYNLESNKGYGTAEHIAAL 253 Query: 189 KEKGPSCIHRLTF 201 K+ G + IHR +F Sbjct: 254 KKYGSTPIHRKSF 266 >gi|22126997|ref|NP_670420.1| ribonuclease HII [Yersinia pestis KIM 10] gi|45442560|ref|NP_994099.1| ribonuclease HII [Yersinia pestis biovar Microtus str. 91001] gi|51597304|ref|YP_071495.1| ribonuclease HII [Yersinia pseudotuberculosis IP 32953] gi|108806531|ref|YP_650447.1| ribonuclease HII [Yersinia pestis Antiqua] gi|108813102|ref|YP_648869.1| ribonuclease HII [Yersinia pestis Nepal516] gi|145598936|ref|YP_001163012.1| ribonuclease HII [Yersinia pestis Pestoides F] gi|149366941|ref|ZP_01888974.1| ribonuclease HII [Yersinia pestis CA88-4125] gi|153946846|ref|YP_001400011.1| ribonuclease HII [Yersinia pseudotuberculosis IP 31758] gi|162421227|ref|YP_001607758.1| ribonuclease HII [Yersinia pestis Angola] gi|165927101|ref|ZP_02222933.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. F1991016] gi|165939835|ref|ZP_02228375.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. IP275] gi|166011925|ref|ZP_02232823.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. E1979001] gi|166211521|ref|ZP_02237556.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. B42003004] gi|167400133|ref|ZP_02305651.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419475|ref|ZP_02311228.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425410|ref|ZP_02317163.1| ribonuclease HII [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470459|ref|ZP_02335163.1| ribonuclease HII [Yersinia pestis FV-1] gi|186896409|ref|YP_001873521.1| ribonuclease HII [Yersinia pseudotuberculosis PB1/+] gi|218928226|ref|YP_002346101.1| ribonuclease HII [Yersinia pestis CO92] gi|229837765|ref|ZP_04457925.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis Pestoides A] gi|229840987|ref|ZP_04461146.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843088|ref|ZP_04463238.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis biovar Orientalis str. India 195] gi|229903545|ref|ZP_04518658.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis Nepal516] gi|270487326|ref|ZP_06204400.1| ribonuclease HII [Yersinia pestis KIM D27] gi|294503075|ref|YP_003567137.1| ribonuclease HII [Yersinia pestis Z176003] gi|29427900|sp|Q8ZH54|RNH2_YERPE RecName: Full=Ribonuclease HII; Short=RNase HII gi|73917839|sp|Q667K3|RNH2_YERPS RecName: Full=Ribonuclease HII; Short=RNase HII gi|122980006|sp|Q1CFG1|RNH2_YERPN RecName: Full=Ribonuclease HII; Short=RNase HII gi|123245970|sp|Q1CAM0|RNH2_YERPA RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226669|sp|A4TL77|RNH2_YERPP RecName: Full=Ribonuclease HII; Short=RNase HII gi|166991071|sp|A7FFI3|RNH2_YERP3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|238687277|sp|A9R382|RNH2_YERPG RecName: Full=Ribonuclease HII; Short=RNase HII gi|238691336|sp|B2JZ20|RNH2_YERPB RecName: Full=Ribonuclease HII; Short=RNase HII gi|21960043|gb|AAM86671.1|AE013913_1 RNAse HII [Yersinia pestis KIM 10] gi|45437425|gb|AAS62976.1| ribonuclease HII [Yersinia pestis biovar Microtus str. 91001] gi|51590586|emb|CAH22227.1| ribonuclease HII [Yersinia pseudotuberculosis IP 32953] gi|108776750|gb|ABG19269.1| RNase HII [Yersinia pestis Nepal516] gi|108778444|gb|ABG12502.1| RNase HII [Yersinia pestis Antiqua] gi|115346837|emb|CAL19723.1| ribonuclease HII [Yersinia pestis CO92] gi|145210632|gb|ABP40039.1| RNase HII [Yersinia pestis Pestoides F] gi|149290555|gb|EDM40631.1| ribonuclease HII [Yersinia pestis CA88-4125] gi|152958341|gb|ABS45802.1| ribonuclease HII [Yersinia pseudotuberculosis IP 31758] gi|162354042|gb|ABX87990.1| ribonuclease HII [Yersinia pestis Angola] gi|165912238|gb|EDR30875.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. IP275] gi|165920997|gb|EDR38221.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. F1991016] gi|165989191|gb|EDR41492.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. E1979001] gi|166207292|gb|EDR51772.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. B42003004] gi|166962216|gb|EDR58237.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050841|gb|EDR62249.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055810|gb|EDR65594.1| ribonuclease HII [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186699435|gb|ACC90064.1| ribonuclease HII/HIII [Yersinia pseudotuberculosis PB1/+] gi|229679315|gb|EEO75418.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis Nepal516] gi|229689964|gb|EEO82023.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis biovar Orientalis str. India 195] gi|229697353|gb|EEO87400.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704142|gb|EEO91154.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis Pestoides A] gi|262361113|gb|ACY57834.1| ribonuclease HII [Yersinia pestis D106004] gi|262365353|gb|ACY61910.1| ribonuclease HII [Yersinia pestis D182038] gi|270335830|gb|EFA46607.1| ribonuclease HII [Yersinia pestis KIM D27] gi|294353534|gb|ADE63875.1| ribonuclease HII [Yersinia pestis Z176003] gi|320014192|gb|ADV97763.1| ribonuclease HII [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 198 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 86/183 (46%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILDPN G+ DSKK+S K+R LY++IT A+ S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPNRPIVGLADSKKLSEKRRLSLYDEITEKALSWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L ++P LIDG P+ L + AV+KGDS Sbjct: 73 RAEPEEIDQLNILHATMLAMQRAVSGLHIVPDYVLIDGNRCPK-LQMPSLAVVKGDSRVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M +P+YGF H GYPTA H + + G + HR +F P+ Sbjct: 132 EISAASILAKVTRDREMTELDLLFPEYGFAQHKGYPTAFHLEKLAALGATVHHRRSFGPV 191 Query: 205 RNL 207 + + Sbjct: 192 KRV 194 >gi|251790731|ref|YP_003005452.1| ribonuclease HII [Dickeya zeae Ech1591] gi|247539352|gb|ACT07973.1| Ribonuclease H [Dickeya zeae Ech1591] Length = 198 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 86/182 (47%), Positives = 114/182 (62%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPN G+ DSK +S K+R LY++I A+ S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPNRPIVGLADSKTLSEKRRLALYDEIREKALAWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID NI AT+ A+ AV L V P LIDG P LP + AV+KGDS Sbjct: 73 RAEPEEIDTLNILHATMLAMQRAVAALPVTPDFVLIDGNRCPA-LPMPSQAVVKGDSRVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M + +++P+YGF H GYPTA H + + G + HR +F P+ Sbjct: 132 EISAASILAKVTRDREMEVLDRQFPEYGFAQHKGYPTAYHLEKLATLGATLHHRRSFAPV 191 Query: 205 RN 206 + Sbjct: 192 KR 193 >gi|167000564|ref|ZP_02266375.1| ribonuclease HII [Burkholderia mallei PRL-20] gi|243063495|gb|EES45681.1| ribonuclease HII [Burkholderia mallei PRL-20] Length = 214 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 124/182 (68%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 V G+DE GRG LAGPVV AA++LDP G++DSK +S KKRE L+++I + A+ S++ Sbjct: 28 VCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIAAYALAYSVA 87 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS + ID NI AT+ A+ AVE L V+P A IDG P L ++ A++ GD++ Sbjct: 88 SASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM-LAIRSEAIVGGDALVP 146 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI+AASI+AKVTRDR++ H+++P YGFD+H GY T +H ++E GP HR +F P+ Sbjct: 147 SISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAPV 206 Query: 205 RN 206 R Sbjct: 207 RE 208 >gi|134277824|ref|ZP_01764539.1| ribonuclease HII [Burkholderia pseudomallei 305] gi|134251474|gb|EBA51553.1| ribonuclease HII [Burkholderia pseudomallei 305] Length = 214 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 124/182 (68%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 V G+DE GRG LAGPVV AA++LDP G++DSK +S KKRE L+++I + A+ S++ Sbjct: 28 VCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAHALAYSVA 87 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS + ID NI AT+ A+ AVE L V+P A IDG P L ++ A++ GD++ Sbjct: 88 SASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM-LAIRSEAIVGGDALVP 146 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI+AASI+AKVTRDR++ H+++P YGFD+H GY T +H ++E GP HR +F P+ Sbjct: 147 SISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAPV 206 Query: 205 RN 206 R Sbjct: 207 RE 208 >gi|157372011|ref|YP_001480000.1| ribonuclease HII [Serratia proteamaculans 568] gi|166991070|sp|A8GID2|RNH2_SERP5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|157323775|gb|ABV42872.1| Ribonuclease H [Serratia proteamaculans 568] Length = 197 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 87/183 (47%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A+ S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPARPIVGLADSKKLSEKRRLALYDEIVEKALSWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P+ LP ++ AV+KGDS Sbjct: 73 RAEPDEIDQLNILHATMLAMQRAVAGLHIAPDMVLIDGNRCPK-LPMRSQAVVKGDSRVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M +++PDYGF H GYPTA H + + G + HR +F P+ Sbjct: 132 EISAASILAKVTRDREMTELDREFPDYGFAQHKGYPTAFHLERLAALGATEHHRRSFAPV 191 Query: 205 RNL 207 R + Sbjct: 192 RRV 194 >gi|254179336|ref|ZP_04885935.1| ribonuclease HII [Burkholderia pseudomallei 1655] gi|184209876|gb|EDU06919.1| ribonuclease HII [Burkholderia pseudomallei 1655] Length = 214 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 124/182 (68%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 V G+DE GRG LAGPVV AA++LDP G++DSK +S KKRE L+++I + A+ S++ Sbjct: 28 VCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAHALAYSVA 87 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS + ID NI AT+ A+ AVE L V+P A IDG P L ++ A++ GD++ Sbjct: 88 SASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM-LAIRSEAIVGGDALVP 146 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI+AASI+AKVTRDR++ H+++P YGFD+H GY T +H ++E GP HR +F P+ Sbjct: 147 SISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAPV 206 Query: 205 RN 206 R Sbjct: 207 RE 208 >gi|259046715|ref|ZP_05737116.1| ribonuclease HII [Granulicatella adiacens ATCC 49175] gi|259036611|gb|EEW37866.1| ribonuclease HII [Granulicatella adiacens ATCC 49175] Length = 256 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 89/210 (42%), Positives = 125/210 (59%), Gaps = 7/210 (3%) Query: 2 FCNSIPERPHFE----LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI 57 F HFE E ++K +AGIDEVGRG LAGPVV AA+IL G+ Sbjct: 46 FAKKAERAAHFEEMQSFERAAQQKGYRMIAGIDEVGRGPLAGPVVAAAVILPEGMEDIGL 105 Query: 58 NDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116 +DSKK+S K+REE++E I A+ I I IDK NI++A+ A+ A+E L P Sbjct: 106 DDSKKLSAKRREEIFEMIKEQAVAIGIGIVDAFTIDKINIYEASKVAMKRAIELLPEQPD 165 Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 LID + +P + +IKGD+ S+SIAAASI+AK RD++M+ + YP YGF + Sbjct: 166 YLLIDAMRLDTGIPQEG--IIKGDAKSISIAAASIVAKEVRDQMMKDYEQLYPGYGFAQN 223 Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 GY T H + +++ GP+ IHR+TF P++ Sbjct: 224 AGYGTKAHIEGLEKLGPTPIHRMTFAPVKE 253 >gi|53723725|ref|YP_103181.1| ribonuclease HII [Burkholderia mallei ATCC 23344] gi|67641696|ref|ZP_00440465.1| ribonuclease HII [Burkholderia mallei GB8 horse 4] gi|121600420|ref|YP_993357.1| ribonuclease HII [Burkholderia mallei SAVP1] gi|124383370|ref|YP_001029206.1| ribonuclease HII [Burkholderia mallei NCTC 10229] gi|126448047|ref|YP_001080864.1| ribonuclease HII [Burkholderia mallei NCTC 10247] gi|126454836|ref|YP_001066737.1| ribonuclease HII [Burkholderia pseudomallei 1106a] gi|167816367|ref|ZP_02448047.1| ribonuclease HII [Burkholderia pseudomallei 91] gi|167846278|ref|ZP_02471786.1| ribonuclease HII [Burkholderia pseudomallei B7210] gi|167894859|ref|ZP_02482261.1| ribonuclease HII [Burkholderia pseudomallei 7894] gi|167919499|ref|ZP_02506590.1| ribonuclease HII [Burkholderia pseudomallei BCC215] gi|217421612|ref|ZP_03453116.1| ribonuclease HII [Burkholderia pseudomallei 576] gi|242316504|ref|ZP_04815520.1| ribonuclease HII [Burkholderia pseudomallei 1106b] gi|254177550|ref|ZP_04884205.1| ribonuclease HII [Burkholderia mallei ATCC 10399] gi|254200133|ref|ZP_04906499.1| ribonuclease HII [Burkholderia mallei FMH] gi|254206471|ref|ZP_04912823.1| ribonuclease HII [Burkholderia mallei JHU] gi|254358121|ref|ZP_04974394.1| ribonuclease HII [Burkholderia mallei 2002721280] gi|81604828|sp|Q62JD8|RNH2_BURMA RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225173|sp|A3MKS8|RNH2_BURM7 RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225174|sp|A2SB87|RNH2_BURM9 RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225175|sp|A1V554|RNH2_BURMS RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225176|sp|A3NWL6|RNH2_BURP0 RecName: Full=Ribonuclease HII; Short=RNase HII gi|52427148|gb|AAU47741.1| ribonuclease HII [Burkholderia mallei ATCC 23344] gi|121229230|gb|ABM51748.1| ribonuclease HII [Burkholderia mallei SAVP1] gi|124291390|gb|ABN00659.1| ribonuclease HII [Burkholderia mallei NCTC 10229] gi|126228478|gb|ABN92018.1| ribonuclease HII [Burkholderia pseudomallei 1106a] gi|126240917|gb|ABO04010.1| ribonuclease HII [Burkholderia mallei NCTC 10247] gi|147749729|gb|EDK56803.1| ribonuclease HII [Burkholderia mallei FMH] gi|147753914|gb|EDK60979.1| ribonuclease HII [Burkholderia mallei JHU] gi|148027248|gb|EDK85269.1| ribonuclease HII [Burkholderia mallei 2002721280] gi|160698589|gb|EDP88559.1| ribonuclease HII [Burkholderia mallei ATCC 10399] gi|217395354|gb|EEC35372.1| ribonuclease HII [Burkholderia pseudomallei 576] gi|238522657|gb|EEP86100.1| ribonuclease HII [Burkholderia mallei GB8 horse 4] gi|242139743|gb|EES26145.1| ribonuclease HII [Burkholderia pseudomallei 1106b] Length = 214 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 124/182 (68%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 V G+DE GRG LAGPVV AA++LDP G++DSK +S KKRE L+++I + A+ S++ Sbjct: 28 VCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAYALAYSVA 87 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS + ID NI AT+ A+ AVE L V+P A IDG P L ++ A++ GD++ Sbjct: 88 SASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM-LAIRSEAIVGGDALVP 146 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI+AASI+AKVTRDR++ H+++P YGFD+H GY T +H ++E GP HR +F P+ Sbjct: 147 SISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAPV 206 Query: 205 RN 206 R Sbjct: 207 RE 208 >gi|227893503|ref|ZP_04011308.1| ribonuclease HII [Lactobacillus ultunensis DSM 16047] gi|227864673|gb|EEJ72094.1| ribonuclease HII [Lactobacillus ultunensis DSM 16047] Length = 250 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 90/205 (43%), Positives = 124/205 (60%), Gaps = 7/205 (3%) Query: 8 ERPHFELEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 E+ L+ EK W V G+DEVGRG LAGPVV AA+I+D + +NDSKK+ Sbjct: 46 EKKESFLKRFSYEKEFWQKNQCVGGVDEVGRGPLAGPVVTAAVIIDQDFDLLDVNDSKKL 105 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S ++R +LY KI A+ + I S ID+ NI++A A+ AV L + P + L+D Sbjct: 106 SPERRLKLYPKILEEAVSVGIGVKSPAVIDQINIYEADRQAMAQAVRALNIKPDALLVDA 165 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 + DLP +IKGD+ S SIAAASI+AKV RD+LM K YP YGF ++ GY T Sbjct: 166 MDVSVDLP--QVKLIKGDAKSNSIAAASIVAKVFRDKLMDDYAKIYPQYGFPNNAGYGTK 223 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 +H + +K+ GP+ IHR TF P+ + Sbjct: 224 EHIEALKKYGPTPIHRKTFAPVSDF 248 >gi|312883822|ref|ZP_07743541.1| ribonuclease HII [Vibrio caribbenthicus ATCC BAA-2122] gi|309368571|gb|EFP96104.1| ribonuclease HII [Vibrio caribbenthicus ATCC BAA-2122] Length = 202 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 90/181 (49%), Positives = 112/181 (61%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S KKR L+ +I A+ SI Sbjct: 17 IAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSEKKRLALFPEIKEKALAWSIG 76 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S IDK NI AT+ A+ A+ENL ++P ALIDG P LP A +V+KGD Sbjct: 77 RCSPVEIDKLNILHATMVAMQRAIENLNIMPDLALIDGNRCPH-LPMAAQSVVKGDLRVA 135 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKV RD M YP+YGF H GYPT H I+ G HR +F+P+ Sbjct: 136 EISAASIIAKVVRDSEMAQLDSLYPEYGFAQHKGYPTKAHLNAIEAHGVIEQHRKSFKPV 195 Query: 205 R 205 + Sbjct: 196 K 196 >gi|167720149|ref|ZP_02403385.1| ribonuclease HII [Burkholderia pseudomallei DM98] gi|167739156|ref|ZP_02411930.1| ribonuclease HII [Burkholderia pseudomallei 14] gi|167824746|ref|ZP_02456217.1| ribonuclease HII [Burkholderia pseudomallei 9] gi|167903248|ref|ZP_02490453.1| ribonuclease HII [Burkholderia pseudomallei NCTC 13177] gi|167911490|ref|ZP_02498581.1| ribonuclease HII [Burkholderia pseudomallei 112] gi|226200132|ref|ZP_03795678.1| ribonuclease HII [Burkholderia pseudomallei Pakistan 9] gi|254297220|ref|ZP_04964673.1| ribonuclease HII [Burkholderia pseudomallei 406e] gi|157807288|gb|EDO84458.1| ribonuclease HII [Burkholderia pseudomallei 406e] gi|225927816|gb|EEH23857.1| ribonuclease HII [Burkholderia pseudomallei Pakistan 9] Length = 214 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 124/182 (68%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 V G+DE GRG LAGPVV AA++LDP G++DSK +S KKRE L+++I + A+ S++ Sbjct: 28 VCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAHALAYSVA 87 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS + ID NI AT+ A+ AVE L V+P A IDG P L ++ A++ GD++ Sbjct: 88 SASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM-LAIRSEAIVGGDALVP 146 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI+AASI+AKVTRDR++ H+++P YGFD+H GY T +H ++E GP HR +F P+ Sbjct: 147 SISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAPV 206 Query: 205 RN 206 R Sbjct: 207 RE 208 >gi|254228402|ref|ZP_04921828.1| ribonuclease HII [Vibrio sp. Ex25] gi|262393534|ref|YP_003285388.1| ribonuclease HII [Vibrio sp. Ex25] gi|151938990|gb|EDN57822.1| ribonuclease HII [Vibrio sp. Ex25] gi|262337128|gb|ACY50923.1| ribonuclease HII [Vibrio sp. Ex25] Length = 211 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L G VV AA+ILDPNN G+NDSKK++ KKR L +I A+ ++ Sbjct: 26 VAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLTEKKRMALLPEIKEKALAWAVG 85 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S + ID+ NI +AT+ A+ AV L+V P LIDG PE LP A AV+KGD Sbjct: 86 RCSPEEIDQLNILQATMVAMQRAVAGLKVQPDLVLIDGNRCPE-LPMDAQAVVKGDLRVA 144 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKV RD+ M K +P +GF H GYPT H + I++ G HR +F+P+ Sbjct: 145 EISAASIIAKVVRDQEMEELDKLHPQFGFAKHKGYPTKAHFEAIEQHGVISEHRKSFKPV 204 Query: 205 RN 206 + Sbjct: 205 KK 206 >gi|258621010|ref|ZP_05716044.1| ribonuclease HII [Vibrio mimicus VM573] gi|258586398|gb|EEW11113.1| ribonuclease HII [Vibrio mimicus VM573] Length = 206 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 93/199 (46%), Positives = 119/199 (59%), Gaps = 7/199 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE+ A +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S KK Sbjct: 8 ELPPFEIPA-----GYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSEKK 62 Query: 68 REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L+ +I A+ S+ S + ID+ NI +AT+ A+ AV L V P L+DG +P Sbjct: 63 RLALFPEIQEKALAWSVGRCSPREIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNKVP 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP A AV+KGD I+AASIIAKV RD M K+YP +GF H GYPTA H Sbjct: 123 -TLPTDAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAAHFA 181 Query: 187 VIKEKGPSCIHRLTFRPLR 205 I++ G HR +F P++ Sbjct: 182 AIEQHGVIEQHRKSFGPVK 200 >gi|260581887|ref|ZP_05849683.1| ribonuclease HII [Haemophilus influenzae NT127] gi|260095080|gb|EEW78972.1| ribonuclease HII [Haemophilus influenzae NT127] Length = 197 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 84/182 (46%), Positives = 118/182 (64%), Gaps = 1/182 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L ++I A+ ++ Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALADEIKEKALAWALG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL + AV+KGDS+ Sbjct: 71 RAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPSQAVVKGDSLVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR +F P+ Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAELGALPQHRRSFAPV 190 Query: 205 RN 206 + Sbjct: 191 KK 192 >gi|240947970|ref|ZP_04752396.1| ribonuclease HII [Actinobacillus minor NM305] gi|240297726|gb|EER48187.1| ribonuclease HII [Actinobacillus minor NM305] Length = 196 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 87/181 (48%), Positives = 116/181 (64%), Gaps = 4/181 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR +L E+I + A+ S+ Sbjct: 12 IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLSEKKRLKLAEEIKAKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L + P L+DG IP +P QA V+KGDS+ Sbjct: 72 RAEPEEIDQLNILHATMLAMQRAVAGLHIQPDFVLVDGNRIPTLSMPAQA--VVKGDSLV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RD M K++P+YGF H GYPT H + + E G + HR +F P Sbjct: 130 QEISAASILAKVARDLEMDELDKQFPEYGFAKHKGYPTKLHFEKLTELGATPFHRKSFAP 189 Query: 204 L 204 + Sbjct: 190 V 190 >gi|238918789|ref|YP_002932303.1| ribonuclease HII [Edwardsiella ictaluri 93-146] gi|259494064|sp|C5B7S2|RNH2_EDWI9 RecName: Full=Ribonuclease HII; Short=RNase HII gi|238868357|gb|ACR68068.1| ribonuclease HII [Edwardsiella ictaluri 93-146] Length = 197 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 87/183 (47%), Positives = 115/183 (62%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A+ S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPARPIAGLADSKKLSEKRRNALYDEIVEKALCWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI +AT+ A+ AV L P LIDG P LP A AV+KGDS Sbjct: 73 RAEAEEIDRLNILQATMVAMQRAVAGLARQPDFVLIDGNRCPA-LPMAAQAVVKGDSRVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M ++YP+YGF H GYPTA H + + G + HR +F P+ Sbjct: 132 EISAASILAKVTRDREMAALDRQYPEYGFARHKGYPTALHLERLAALGATEHHRRSFGPV 191 Query: 205 RNL 207 + + Sbjct: 192 KRV 194 >gi|262170785|ref|ZP_06038463.1| ribonuclease HII [Vibrio mimicus MB-451] gi|261891861|gb|EEY37847.1| ribonuclease HII [Vibrio mimicus MB-451] Length = 206 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 93/199 (46%), Positives = 119/199 (59%), Gaps = 7/199 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE+ A +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S KK Sbjct: 8 ELPPFEIPA-----GYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSEKK 62 Query: 68 REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L+ +I A+ S+ S + ID+ NI +AT+ A+ AV L V P L+DG +P Sbjct: 63 RLALFPEIQEKALAWSVGRCSPREIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNKVP 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP A AV+KGD I+AASIIAKV RD M K+YP +GF H GYPTA H Sbjct: 123 -TLPMDAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAAHFA 181 Query: 187 VIKEKGPSCIHRLTFRPLR 205 I++ G HR +F P++ Sbjct: 182 AIEQHGVIEQHRKSFGPVK 200 >gi|330959212|gb|EGH59472.1| ribonuclease HII [Pseudomonas syringae pv. maculicola str. ES4326] Length = 217 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 86/181 (47%), Positives = 115/181 (63%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ KRE+L+ +I A+ I+ Sbjct: 14 VAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEAKREKLFVEIQEKALCWFIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AVE L + P+ ALIDG P+ L + V++GD+ Sbjct: 74 RAEVEEIDQLNILHATMLAMKRAVEGLVITPKLALIDGNRCPQ-LSVPSAPVVQGDAKVP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P+ Sbjct: 133 AIAAASILAKVSRDREMAALELVYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 192 Query: 205 R 205 R Sbjct: 193 R 193 >gi|260767811|ref|ZP_05876746.1| ribonuclease HII [Vibrio furnissii CIP 102972] gi|260617320|gb|EEX42504.1| ribonuclease HII [Vibrio furnissii CIP 102972] Length = 206 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 88/183 (48%), Positives = 115/183 (62%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPN+ G+NDSKK+S KKR L +I A+ S+ Sbjct: 21 IAGVDEVGRGPLVGDVVTAAVILDPNHPIEGLNDSKKLSEKKRLALLPEIQQKALAWSVG 80 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S Q ID+ NI +AT+ A+ AV+ L + P L+DG IP LP A AV+KGD Sbjct: 81 RCSPQEIDELNIFQATMLAMQRAVDGLAIKPDLVLVDGNKIP-SLPMDAQAVVKGDLRVA 139 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKV RD+ M K YP +GF H GYPT H + I++ G HR +F P+ Sbjct: 140 QISAASIIAKVVRDQEMEELDKAYPQFGFAKHKGYPTKAHFEAIEQHGVIDQHRRSFGPV 199 Query: 205 RNL 207 + + Sbjct: 200 KRV 202 >gi|83313088|ref|YP_423352.1| ribonuclease HII [Magnetospirillum magneticum AMB-1] gi|11387098|sp|Q50412|RNH2_MAGMM RecName: Full=Ribonuclease HII; Short=RNase HII gi|1054584|dbj|BAA06983.1| unnamed protein product [Magnetospirillum magneticum AMB-1] gi|82947929|dbj|BAE52793.1| Ribonuclease HII [Magnetospirillum magneticum AMB-1] Length = 201 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 85/183 (46%), Positives = 117/183 (63%), Gaps = 5/183 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYEKITSSAII 81 V GIDEVGRG LAGPVV AA+ILDP +P + +DSKK+S + REEL E + ++AI+ Sbjct: 14 VCGIDEVGRGPLAGPVVAAAVILDPARLPKTLLERLDDSKKLSKRNREELAELVPATAIL 73 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 AS + ID+ NI +AT A+ A + L AL+DG P LPC V+ GD Sbjct: 74 GFGEASVEEIDRINILQATFLAMRRAYDALGRECAHALVDGNR-PPGLPCPVRCVVGGDG 132 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ISLSIAAAS++AKV RD +M + +P++G++ + GY TA+H +K GP+ HR +F Sbjct: 133 ISLSIAAASVVAKVRRDAMMADLARAHPEFGWERNAGYGTAEHLDALKRLGPTPHHRRSF 192 Query: 202 RPL 204 P+ Sbjct: 193 APV 195 >gi|323495348|ref|ZP_08100426.1| ribonuclease HII [Vibrio brasiliensis LMG 20546] gi|323310419|gb|EGA63605.1| ribonuclease HII [Vibrio brasiliensis LMG 20546] Length = 205 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 89/181 (49%), Positives = 115/181 (63%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKR L +I A+ S+ Sbjct: 20 VAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEKALAWSVG 79 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S + ID+ NI +AT+ A+ A+ L V P ALIDG PE LP + AV+KGD Sbjct: 80 RCSPEEIDQLNILQATMVAMQRAIAGLGVQPDLALIDGNRCPE-LPMDSQAVVKGDLRVA 138 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKV RD+ M K +P +GF H GYPT H + I++ G HR +F+P+ Sbjct: 139 EISAASIIAKVVRDQEMEELDKLHPQFGFAKHKGYPTKAHFEAIEQHGVIEQHRKSFKPV 198 Query: 205 R 205 + Sbjct: 199 K 199 >gi|268319575|ref|YP_003293231.1| hypothetical protein FI9785_1100 [Lactobacillus johnsonii FI9785] gi|262397950|emb|CAX66964.1| rnhB [Lactobacillus johnsonii FI9785] Length = 250 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 87/190 (45%), Positives = 124/190 (65%), Gaps = 7/190 (3%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 EK W VAG+DEVGRG LAGPVV AA+IL + +NDSKK+S KKR+ L+ KI Sbjct: 58 EKEFWQKDQLVAGVDEVGRGPLAGPVVTAAVILPHDFDLIDVNDSKKLSPKKRQALFPKI 117 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A+ +S+ A++ ID+ NI++A A+ HAV+ L+V P + L+D ++P ++P Sbjct: 118 LEKAVSVSVGLANNDLIDQINIYEADRVAMAHAVQGLKVKPDALLVDAMNVPLNIP--QV 175 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +I GD+ S SIAAASI+AKV RD LM + YP+Y F + GY T +H + +K+ GP+ Sbjct: 176 KLIHGDAKSNSIAAASIVAKVFRDNLMDAYGELYPEYDFKHNAGYGTREHMEALKKYGPT 235 Query: 195 CIHRLTFRPL 204 IHR +F P+ Sbjct: 236 PIHRRSFAPV 245 >gi|322391939|ref|ZP_08065403.1| ribonuclease HII [Streptococcus peroris ATCC 700780] gi|321145165|gb|EFX40562.1| ribonuclease HII [Streptococcus peroris ATCC 700780] Length = 262 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 89/204 (43%), Positives = 128/204 (62%), Gaps = 9/204 (4%) Query: 11 HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 + LE M+ EK ++ +AG+DEVGRG LAGPVV AA+IL G+NDSK+I Sbjct: 51 NLRLEGMLSYEKELYAQGLNLIAGVDEVGRGPLAGPVVAAAVILPKKCKIKGLNDSKQIP 110 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KK E+++ + +A+ I I + ID+ NI++AT A+ A+ L+ P LID Sbjct: 111 KKKHREVFQAVKDNALAIGIGIMDNHIIDQVNIYEATKLAMKEAISQLESQPEHLLIDAM 170 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + DLP ++IKGD+ SLSIAAASI+AKVTRD LM +++P Y F+ + GY TAK Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDDLMVTYGQQFPGYDFEHNAGYGTAK 228 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H + IK+ G + IHR +F P+++ Sbjct: 229 HLEGIKQYGITSIHRRSFEPIKSF 252 >gi|327470026|gb|EGF15490.1| ribonuclease HII [Streptococcus sanguinis SK330] Length = 254 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 90/203 (44%), Positives = 129/203 (63%), Gaps = 9/203 (4%) Query: 12 FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 LE M++ EK ++ +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI Sbjct: 52 LRLEQMLQHEKELYKAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPK 111 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KK +E+Y+ + A+ + I + IDK NI++AT A+ A+ L++ P LID Sbjct: 112 KKHQEIYQAVLDKALAVGIGLMDNDIIDKVNIYEATKLAMKEALSKLRLKPDYLLIDAIK 171 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + ++P ++ +IKGD+ SLSIAAASI+AKVTRD+LM K++P Y F + GY T H Sbjct: 172 LDVEIPQES--IIKGDANSLSIAAASIVAKVTRDKLMADYDKEFPGYDFAQNAGYGTKSH 229 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 Q ++ G + IHR TF P++++ Sbjct: 230 LQGLERHGVTPIHRKTFEPIKSM 252 >gi|303228938|ref|ZP_07315748.1| ribonuclease HII [Veillonella atypica ACS-134-V-Col7a] gi|302516352|gb|EFL58284.1| ribonuclease HII [Veillonella atypica ACS-134-V-Col7a] Length = 266 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 88/197 (44%), Positives = 134/197 (68%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ E M ++ ++ VAG+DEVGRG +AGPV VAA+IL P + G+NDSKK++ +KRE L Sbjct: 63 YDYEGMFYDEGLYHVAGVDEVGRGPIAGPVTVAAVILPPMTLISGLNDSKKLTEEKREAL 122 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I + A+ +S S S + ID+ NI++AT A+Y A+ L V + + D +P DL Sbjct: 123 YDIIMNEAVAVSCISYSPEKIDELNIYEATRQAMYEAIRTLDVPAEAVVADAMKLP-DLT 181 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGDS S +IAAASIIAKVTRDR M+ ++YP YGF H GY T H++ +++ Sbjct: 182 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDEEYPGYGFGIHKGYYTELHKEALEQ 241 Query: 191 KGPSCIHRLTFRPLRNL 207 +G + +HR +F P++++ Sbjct: 242 QGVTPLHRKSFEPIKSI 258 >gi|329667434|gb|AEB93382.1| ribonuclease HII [Lactobacillus johnsonii DPC 6026] Length = 250 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 87/190 (45%), Positives = 124/190 (65%), Gaps = 7/190 (3%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 EK W VAG+DEVGRG LAGPVV AA+IL + +NDSKK+S KKR+ L+ KI Sbjct: 58 EKEFWQKDQLVAGVDEVGRGPLAGPVVTAAVILPHDFDLIDVNDSKKLSPKKRQALFPKI 117 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A+ +S+ A++ ID+ NI++A A+ HAV+ L+V P + L+D ++P ++P Sbjct: 118 LEKAVSVSVGLANNDVIDQINIYEADRVAMAHAVQGLKVKPDALLVDAMNVPLNIP--QV 175 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +I GD+ S SIAAASI+AKV RD LM + YP+Y F + GY T +H + +K+ GP+ Sbjct: 176 KLIHGDAKSNSIAAASIVAKVFRDNLMDAYGELYPEYDFKHNAGYGTREHMEALKKYGPT 235 Query: 195 CIHRLTFRPL 204 IHR +F P+ Sbjct: 236 PIHRRSFAPV 245 >gi|307260586|ref|ZP_07542278.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869663|gb|EFN01448.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 186 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 87/183 (47%), Positives = 117/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L +I + A+ S+ Sbjct: 2 IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLLLAGEIKAKALCWSLG 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L + P L+DG IP LP A AVIKGDS+ Sbjct: 62 RAEPEEIDRLNILHATMLAMQRAVAGLNIQPDFVLVDGNRIP-TLPMPAQAVIKGDSLVA 120 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M +YP+YGF H GYPT H + +++ G + HR +F P+ Sbjct: 121 EISAASILAKVARDQEMAELDVQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKSFAPV 180 Query: 205 RNL 207 + + Sbjct: 181 KKI 183 >gi|225374458|ref|ZP_03751679.1| hypothetical protein ROSEINA2194_00073 [Roseburia inulinivorans DSM 16841] gi|225213696|gb|EEG96050.1| hypothetical protein ROSEINA2194_00073 [Roseburia inulinivorans DSM 16841] Length = 253 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 89/177 (50%), Positives = 116/177 (65%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG LAGPVV A+IL + INDSKK+S KREELY+ I A+ + I Sbjct: 73 ICGIDEVGRGPLAGPVVAGAVILPKDCDILYINDSKKLSAAKREELYDVIMEKAVAVGIG 132 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS Q ID+ NI +AT +A+ A+ L V P L D +IP + + +IKGD+ S+ Sbjct: 133 MASSQRIDEINILQATYEAMREAISKLSVKPDILLNDAVTIP-GVSIRQVPIIKGDAKSI 191 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SI AASI+AKVTRDRLM K P YGF S+ GY +A+H + ++E GPS IHR++F Sbjct: 192 SIGAASIVAKVTRDRLMVEYDKILPQYGFASNKGYGSAEHIRALQEAGPSPIHRVSF 248 >gi|116494884|ref|YP_806618.1| ribonuclease HII [Lactobacillus casei ATCC 334] gi|301066445|ref|YP_003788468.1| ribonuclease HII [Lactobacillus casei str. Zhang] gi|122263698|sp|Q039E6|RNH2_LACC3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|116105034|gb|ABJ70176.1| RNase HII [Lactobacillus casei ATCC 334] gi|300438852|gb|ADK18618.1| Ribonuclease HII [Lactobacillus casei str. Zhang] Length = 252 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 88/192 (45%), Positives = 124/192 (64%), Gaps = 8/192 (4%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 E+ +W VAG+DEVGRG LAGPVV AA+IL P++ + +NDSK+++ +R LY I Sbjct: 60 ERQLWGTYEYVAGLDEVGRGPLAGPVVTAAVIL-PHHFQWPVNDSKQLTAHERNVLYPHI 118 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 + AI + I A ++ ID+ NI+ AT A+ AV++L+V P L+D +P DLP + Sbjct: 119 LTEAIAVGIGVADNRTIDRENIYHATELAMAQAVDHLRVAPECLLVDAMHVPVDLPQKRL 178 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 IKGD+ S+SIAAASI+AKV RDRLM + K YP Y F ++GY T H + G + Sbjct: 179 --IKGDANSISIAAASIVAKVIRDRLMMMYDKIYPGYDFKDNMGYGTKAHLAGLAAHGVT 236 Query: 195 CIHRLTFRPLRN 206 IHR +F P+R+ Sbjct: 237 PIHRRSFGPVRD 248 >gi|310764936|gb|ADP09886.1| Ribonuclease HII [Erwinia sp. Ejp617] Length = 207 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILDP+ G+ DSKK+S K+R LY++I A+ S+ Sbjct: 12 IAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLGDSKKLSEKRRLALYDEIKDKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L + P LIDG P L + AV+KGDS+ Sbjct: 72 RAEPEEIDRLNILHATMLAMQRAVAGLHLTPDFVLIDGNRCPA-LAMPSRAVVKGDSLVP 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M ++YP YGF H GYPTA H + + G + HR +F P+ Sbjct: 131 EISAASIMAKVTRDREMCELDQQYPQYGFARHKGYPTAVHMEKLARFGVTPQHRRSFAPV 190 Query: 205 RN 206 RN Sbjct: 191 RN 192 >gi|307129834|ref|YP_003881850.1| ribonuclease HII [Dickeya dadantii 3937] gi|306527363|gb|ADM97293.1| ribonuclease HII [Dickeya dadantii 3937] Length = 198 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 85/182 (46%), Positives = 114/182 (62%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPN G+ DSK +S K+R LY++I A+ S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPNRPIAGLADSKTLSEKRRLALYDEIREKALAWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID NI AT+ A+ AV L + P LIDG P LP + AV+KGDS Sbjct: 73 RAEPEEIDSLNILHATMLAMQRAVAGLPITPDFVLIDGNRCP-SLPMPSQAVVKGDSRVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M + +++P+YGF H GYPTA H + + G + HR +F P+ Sbjct: 132 EISAASILAKVTRDREMEVLDQQFPEYGFAQHKGYPTAYHLEKLATLGATLHHRRSFAPV 191 Query: 205 RN 206 + Sbjct: 192 KR 193 >gi|260220952|emb|CBA29032.1| Ribonuclease HII [Curvibacter putative symbiont of Hydra magnipapillata] Length = 193 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 87/180 (48%), Positives = 119/180 (66%), Gaps = 2/180 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DE GRG LAGPVV AA+ILD G+NDSKK+S +RE+L+++I + A+ SI+ Sbjct: 11 VAGVDEAGRGPLAGPVVAAAVILDDLRPIAGLNDSKKLSAARREKLFDEIRAKALCCSIA 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID+ NI +ATL A+ AVE L++ P L+DG +P L A A++KGD+ Sbjct: 71 QASVEEIDEINILQATLLAMRRAVEGLRLKPAKVLVDGNRLPV-LDVLAEAIVKGDATVP 129 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKVTRDR +YP YGF +H GY TA+H ++ G HR TF P+ Sbjct: 130 AISAASILAKVTRDRWCAELDARYPQYGFATHKGYGTAEHLAALQTHGACPEHRKTFAPV 189 >gi|191638395|ref|YP_001987561.1| ribonuclease HII [Lactobacillus casei BL23] gi|238693037|sp|B3WEA2|RNH2_LACCB RecName: Full=Ribonuclease HII; Short=RNase HII gi|190712697|emb|CAQ66703.1| Ribonuclease HII (RNase HII) [Lactobacillus casei BL23] gi|327382424|gb|AEA53900.1| hypothetical protein LC2W_1567 [Lactobacillus casei LC2W] gi|327385624|gb|AEA57098.1| hypothetical protein LCBD_1601 [Lactobacillus casei BD-II] Length = 252 Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 88/192 (45%), Positives = 124/192 (64%), Gaps = 8/192 (4%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 E+ +W VAG+DEVGRG LAGPVV AA+IL P++ + +NDSK+++ +R LY I Sbjct: 60 ERQLWGTYEYVAGLDEVGRGPLAGPVVTAAVIL-PHHFQWPVNDSKQLTAHERNVLYPHI 118 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 + AI + I A ++ ID+ NI+ AT A+ AV++L+V P L+D +P DLP + Sbjct: 119 LTEAIAVGIGVADNRTIDRENIYHATELAMAQAVDHLRVAPECLLVDAMHVPVDLPQKRL 178 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 IKGD+ S+SIAAASI+AKV RDRLM + K YP Y F ++GY T H + G + Sbjct: 179 --IKGDANSISIAAASIVAKVIRDRLMMMYDKIYPGYDFKDNMGYGTKAHLAGLAAHGVT 236 Query: 195 CIHRLTFRPLRN 206 IHR +F P+R+ Sbjct: 237 PIHRRSFGPVRD 248 >gi|86748206|ref|YP_484702.1| ribonuclease HII [Rhodopseudomonas palustris HaA2] gi|123293064|sp|Q2J169|RNH2_RHOP2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|86571234|gb|ABD05791.1| RNase HII [Rhodopseudomonas palustris HaA2] Length = 284 Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 93/195 (47%), Positives = 128/195 (65%), Gaps = 1/195 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + ++ +WPVAG DE GRG LAGPVV AA++LDP +P G++DSK++S +KRE Sbjct: 57 PSFRRERALIKRGIWPVAGCDEAGRGPLAGPVVAAAVVLDPKRVPKGLDDSKRLSAEKRE 116 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 EL+E+I +SA +S++ AS + I++ NI +A+L A+ AV L +P+ +DGR Sbjct: 117 ELFEEICASAQVSVACASPERINRDNILRASLWALTRAVHALPDLPQHVFVDGRDRLATR 176 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C++ AVI GD + SIAAASIIAKVTRDRLM + P YGF+ H GY +H + Sbjct: 177 -CESEAVIGGDGLIASIAAASIIAKVTRDRLMCRLAQDCPGYGFEQHKGYGVPEHLAALA 235 Query: 190 EKGPSCIHRLTFRPL 204 GPS HR F P+ Sbjct: 236 RLGPSVHHRRFFAPV 250 >gi|227535118|ref|ZP_03965167.1| ribonuclease HII [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187259|gb|EEI67326.1| ribonuclease HII [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 252 Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 88/192 (45%), Positives = 124/192 (64%), Gaps = 8/192 (4%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 E+ +W VAG+DEVGRG LAGPVV AA+IL P++ + +NDSK+++ +R LY I Sbjct: 60 ERQLWGTYEYVAGLDEVGRGPLAGPVVTAAVIL-PHHFQWPVNDSKQLTAHERNVLYPHI 118 Query: 76 TSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 + AI+ I A ++ ID+ NI+ AT A+ AV++L+V P L+D +P DLP + Sbjct: 119 LTEAIVVGIGVADNRTIDRENIYHATELAMAQAVDHLRVAPECLLVDAMHVPVDLPQKRL 178 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 IKGD+ S+SIAAASI+AKV RDRLM + K YP Y F ++GY T H + G + Sbjct: 179 --IKGDANSISIAAASIVAKVIRDRLMMMYDKIYPGYDFKDNMGYGTKAHLAGLAAHGVT 236 Query: 195 CIHRLTFRPLRN 206 IHR +F P+R+ Sbjct: 237 PIHRRSFGPVRD 248 >gi|311280848|ref|YP_003943079.1| Ribonuclease H [Enterobacter cloacae SCF1] gi|308750043|gb|ADO49795.1| Ribonuclease H [Enterobacter cloacae SCF1] Length = 198 Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 112/182 (61%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L+++I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALFDEIKEKALCWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P LP + AV+KGDS Sbjct: 72 RAEPHEIDELNILHATMLAMQRAVAGLHITPEYVLIDGNRCPA-LPVPSMAVVKGDSRVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H + + E GP+ HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMAELDVTFPQYGFAQHKGYPTAFHLEKLAEHGPTEQHRRSFGPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|304404228|ref|ZP_07385890.1| Ribonuclease H [Paenibacillus curdlanolyticus YK9] gi|304347206|gb|EFM13038.1| Ribonuclease H [Paenibacillus curdlanolyticus YK9] Length = 206 Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 92/192 (47%), Positives = 119/192 (61%), Gaps = 4/192 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E E ++ E+ +AGIDEVGRG L G VV AA+IL P + G+NDSKK+S KKR EL Sbjct: 2 LEYEKLLWEQGCSNIAGIDEVGRGCLFGDVVAAAVILPPGLVLDGVNDSKKLSEKKRNEL 61 Query: 72 YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ SI+ ID+ NI +A+ A+ AV+ L V P L+D I DLP Sbjct: 62 YDIIIEHALYWSIARIDSDEIDRINIKQASRLAMKQAVQTLGVDPDHLLVDAEKIDLDLP 121 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK-YPDYGFDSHVGYPTAKHQQVIK 189 Q A+IKGD+ S SIAAASI+AKVTRDRL + YP YG H GY T H++ + Sbjct: 122 QQ--AIIKGDATSQSIAAASILAKVTRDRLCTTEWESLYPGYGIAIHKGYATKLHREKLL 179 Query: 190 EKGPSCIHRLTF 201 E GP+ +HR +F Sbjct: 180 ELGPTPLHRKSF 191 >gi|269138107|ref|YP_003294807.1| ribonuclease HII [Edwardsiella tarda EIB202] gi|267983767|gb|ACY83596.1| ribonuclease HII [Edwardsiella tarda EIB202] gi|304558151|gb|ADM40815.1| Ribonuclease HII [Edwardsiella tarda FL6-60] Length = 197 Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 87/183 (47%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A+ S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPARPIAGLADSKKLSEKRRCALYDEIVEKALCWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI +AT+ A+ AV L + P LIDG P LP A AV+KGDS Sbjct: 73 RAEAEEIDRLNILQATMVAMQRAVAGLALPPDFVLIDGNRCPA-LPMAAQAVVKGDSRVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M ++YP+YGF H GYPTA H + + G + HR +F P+ Sbjct: 132 EISAASILAKVTRDREMAELDRQYPEYGFAQHKGYPTALHLERLAALGATEHHRRSFGPV 191 Query: 205 RNL 207 + + Sbjct: 192 KRV 194 >gi|296133539|ref|YP_003640786.1| Ribonuclease H [Thermincola sp. JR] gi|296032117|gb|ADG82885.1| Ribonuclease H [Thermincola potens JR] Length = 259 Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 94/210 (44%), Positives = 129/210 (61%), Gaps = 11/210 (5%) Query: 8 ERPHFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61 E+ L A+++ E+ +W VAGIDE GRG LAGPVV AA+IL ++ G+NDSK Sbjct: 52 EKEKERLNALLKYERELWAAGYTLVAGIDEAGRGPLAGPVVAAAVILKQGDLIEGLNDSK 111 Query: 62 KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K+S +KR EL E I A+ I S ID+ NI++A L A+ AV + + P L+ Sbjct: 112 KLSPEKRSELEEVIKERAVAYGIGIVSETEIDEMNIYQAALKAMRIAVAKISLKPEYLLV 171 Query: 121 DGRSIPE-DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 D +IP +P +A ++ GD++S SIAAASI+AK TRDR+M YP YGF H GY Sbjct: 172 DAVTIPGVSIPQKA--IVHGDALSCSIAAASILAKETRDRIMTELDALYPHYGFAQHKGY 229 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLR-NLS 208 TA H + +K+ GP +HR TF +R NL+ Sbjct: 230 ATAFHLEALKKYGPCPVHRKTFGQVRQNLT 259 >gi|227889894|ref|ZP_04007699.1| ribonuclease HII [Lactobacillus johnsonii ATCC 33200] gi|227849338|gb|EEJ59424.1| ribonuclease HII [Lactobacillus johnsonii ATCC 33200] Length = 250 Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 87/190 (45%), Positives = 124/190 (65%), Gaps = 7/190 (3%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 EK W VAG+DEVGRG LAGPVV AA+IL + +NDSKK+S KKR+ L+ KI Sbjct: 58 EKEFWQKDRLVAGVDEVGRGPLAGPVVTAAVILPHDFDLIDVNDSKKLSPKKRQALFPKI 117 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A+ +S+ A++ ID+ NI++A A+ HAV+ L+V P + L+D ++P ++P Sbjct: 118 LEKAVSVSVGLANNDVIDQINIYEADRVAMAHAVQGLKVKPDALLVDAMNVPLNIP--QV 175 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +I GD+ S SIAAASI+AKV RD LM + YP+Y F + GY T +H + +K+ GP+ Sbjct: 176 KLIHGDAKSNSIAAASIVAKVFRDNLMDAYGELYPEYDFKHNAGYGTREHMEALKKYGPT 235 Query: 195 CIHRLTFRPL 204 IHR +F P+ Sbjct: 236 PIHRRSFAPV 245 >gi|328946298|gb|EGG40442.1| ribonuclease HII [Streptococcus sanguinis SK1087] Length = 254 Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 89/203 (43%), Positives = 129/203 (63%), Gaps = 9/203 (4%) Query: 12 FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 LE M+R EK ++ +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI Sbjct: 52 LRLEQMLRYEKELYQAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKINGLNDSKKIPK 111 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KK +++Y+ + A+ + I + + ID+ NI++AT A+ A+ L++ LID Sbjct: 112 KKHQDIYQAVMDKALAVGIGLMNSEIIDQVNIYEATKLAMKEALSKLRLKSDYLLIDAMK 171 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + D+P ++ +IKGD+ SLSIAAASI+AKVTRD+LM K++P Y F + GY T H Sbjct: 172 LDVDIPQES--IIKGDANSLSIAAASIVAKVTRDKLMTDYDKEFPGYDFAQNAGYGTKSH 229 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 Q ++ G + IHR TF P++++ Sbjct: 230 LQGLERHGVTPIHRKTFEPVKSM 252 >gi|293365454|ref|ZP_06612163.1| ribonuclease HII [Streptococcus oralis ATCC 35037] gi|291315822|gb|EFE56266.1| ribonuclease HII [Streptococcus oralis ATCC 35037] Length = 259 Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 91/203 (44%), Positives = 126/203 (62%), Gaps = 9/203 (4%) Query: 12 FELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 LE M+ EK ++ +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI Sbjct: 52 LRLETMLSYEKELYKQGLTLIAGVDEVGRGPLAGPVVAAAVILPKNCKIRGLNDSKKIPK 111 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KK E+Y + A+ I I +Q ID+ NI++AT A+ A+ + P LID Sbjct: 112 KKHLEIYHAVQDQALAIGIGIMDNQVIDQVNIYEATKLAMKEAISQVSPKPEHLLIDAMK 171 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + +P A+IKGD+ SLSIAAASI+AKVTRD LM+ ++YP Y F ++ GY TAKH Sbjct: 172 LELSIP--QTAIIKGDANSLSIAAASIVAKVTRDELMKEYDQQYPGYDFTANAGYGTAKH 229 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 + +++ G + IHR +F P++ L Sbjct: 230 LEGLEKLGVTPIHRTSFEPVKTL 252 >gi|170768530|ref|ZP_02902983.1| ribonuclease HII [Escherichia albertii TW07627] gi|170122634|gb|EDS91565.1| ribonuclease HII [Escherichia albertii TW07627] Length = 198 Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 89/181 (49%), Positives = 112/181 (61%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LYE+I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEEIKEKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P+ LP + AV+KGDS Sbjct: 72 RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPVPSMAVVKGDSRVP 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M YP YGF H GYPTA H + + E G + HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMAALDTVYPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGPV 190 Query: 205 R 205 + Sbjct: 191 K 191 >gi|27365221|ref|NP_760749.1| ribonuclease HII [Vibrio vulnificus CMCP6] gi|37680727|ref|NP_935336.1| ribonuclease HII [Vibrio vulnificus YJ016] gi|320155606|ref|YP_004187985.1| ribonuclease HII [Vibrio vulnificus MO6-24/O] gi|29611847|sp|Q8DBE7|RNH2_VIBVU RecName: Full=Ribonuclease HII; Short=RNase HII gi|39932256|sp|Q7MIH3|RNH2_VIBVY RecName: Full=Ribonuclease HII; Short=RNase HII gi|27361368|gb|AAO10276.1| Ribonuclease HII [Vibrio vulnificus CMCP6] gi|37199476|dbj|BAC95307.1| ribonuclease HII [Vibrio vulnificus YJ016] gi|319930918|gb|ADV85782.1| ribonuclease HII [Vibrio vulnificus MO6-24/O] Length = 207 Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 114/182 (62%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKR L +I A+ ++ Sbjct: 21 IAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIQEKALAWAVG 80 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S + ID+ NI +AT+ A+ AVE L V P LIDG P LP + AV+KGD Sbjct: 81 RCSPEEIDQLNILQATMVAMQRAVEGLAVKPDLVLIDGNRCPA-LPMDSQAVVKGDLRVA 139 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKV RD+ M K+YP +GF H GYPT H I++ G HR +F+P+ Sbjct: 140 QISAASIIAKVVRDQEMEELDKQYPQFGFAQHKGYPTKAHFDAIEKHGVIEQHRKSFKPV 199 Query: 205 RN 206 + Sbjct: 200 KK 201 >gi|307244937|ref|ZP_07527034.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247112|ref|ZP_07529164.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307253891|ref|ZP_07535743.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258345|ref|ZP_07540086.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306854102|gb|EFM86310.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856361|gb|EFM88512.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306863095|gb|EFM95037.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867529|gb|EFM99376.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 186 Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 87/183 (47%), Positives = 117/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+IL PNN G+ DSKK+S KKR L E+I + A+ S+ Sbjct: 2 IAGVDEVGRGPLVGAVVTAAVILAPNNPIEGLADSKKLSEKKRLLLAEEIKAKALCWSLG 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L + P L+DG IP LP A AVIKGDS+ Sbjct: 62 RAEPEEIDRLNILHATMLAMQRAVAGLNIQPDFVLVDGNRIP-TLPMPAQAVIKGDSLVA 120 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M +YP+YGF H GYPT H + +++ G + HR +F P+ Sbjct: 121 EISAASILAKVARDQEMAELDVQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKSFAPV 180 Query: 205 RNL 207 + + Sbjct: 181 KKI 183 >gi|114769695|ref|ZP_01447305.1| ribonuclease HII [alpha proteobacterium HTCC2255] gi|114549400|gb|EAU52282.1| ribonuclease HII [alpha proteobacterium HTCC2255] Length = 210 Score = 154 bits (390), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 92/197 (46%), Positives = 126/197 (63%), Gaps = 1/197 (0%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 ++ +E +R + G+DEVGRG AGPV A+ILDP NIP G+NDSKK++ K+R + Sbjct: 7 NYNIENSLRPNGNEVIMGVDEVGRGPWAGPVTACAVILDPENIPPGLNDSKKLNVKQRTK 66 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 L+E I +S+++S IDK NI +AT A+ ++ L IP LIDG +P +LP Sbjct: 67 LFEDIMNSSLVSCVHVDVGEIDKINILQATFRAMERSISKLP-IPDHILIDGNKLPPNLP 125 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A A+IKGDS S SIAAASIIAKVTRDRLM +YP YG++ + GY T HQ + Sbjct: 126 SPATAIIKGDSKSASIAAASIIAKVTRDRLMADLSVEYPGYGWEKNAGYGTKMHQSGLLN 185 Query: 191 KGPSCIHRLTFRPLRNL 207 G + HR +F+P+ N+ Sbjct: 186 NGVTPHHRRSFKPIHNM 202 >gi|301155660|emb|CBW15128.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Haemophilus parainfluenzae T3T1] Length = 200 Score = 154 bits (390), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 85/181 (46%), Positives = 114/181 (62%), Gaps = 1/181 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85 AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L +I A+ ++ Sbjct: 14 AGVDEVGRGPLVGAVVTAAVILDPNNPIAGLADSKKLSEKKRLALAAEIKEKALAWAMGR 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A ID+ NI A++ A+ AV+ L++ P L+DG IP +L A AV+KGDS+ Sbjct: 74 AEPAEIDELNILHASMLAMERAVKALEIQPHFVLVDGNRIPPNLSLPAQAVVKGDSLVAE 133 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AKV RD+ M KKYP+Y F H GYPT H + + E GP +R +F P++ Sbjct: 134 ISAASILAKVARDQEMEELDKKYPEYAFAQHKGYPTKLHLEKLAELGPLPEYRRSFSPVK 193 Query: 206 N 206 Sbjct: 194 K 194 >gi|319897459|ref|YP_004135656.1| ribonuclease hii, degrades RNA of DNA-RNA hybrids [Haemophilus influenzae F3031] gi|317432965|emb|CBY81332.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Haemophilus influenzae F3031] Length = 197 Score = 154 bits (390), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 85/182 (46%), Positives = 117/182 (64%), Gaps = 1/182 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I A+ ++ Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKALAWALG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI +A+L A+ AV++L++ P L+DG IP+ L A A++KGDSI Sbjct: 71 RAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKYLDIPAQAIVKGDSIVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR +F P+ Sbjct: 131 EISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRRSFAPV 190 Query: 205 RN 206 + Sbjct: 191 KK 192 >gi|46143677|ref|ZP_00134750.2| COG0164: Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207617|ref|YP_001052842.1| ribonuclease HII [Actinobacillus pleuropneumoniae L20] gi|303251953|ref|ZP_07338124.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|166225164|sp|A3MYK1|RNH2_ACTP2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|126096409|gb|ABN73237.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|302649383|gb|EFL79568.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 197 Score = 154 bits (390), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 87/183 (47%), Positives = 117/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+IL PNN G+ DSKK+S KKR L E+I + A+ S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILAPNNPIEGLADSKKLSEKKRLLLAEEIKAKALCWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L + P L+DG IP LP A AVIKGDS+ Sbjct: 73 RAEPEEIDRLNILHATMLAMQRAVAGLNIQPDFVLVDGNRIP-TLPMPAQAVIKGDSLVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M +YP+YGF H GYPT H + +++ G + HR +F P+ Sbjct: 132 EISAASILAKVARDQEMAELDVQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKSFAPV 191 Query: 205 RNL 207 + + Sbjct: 192 KKI 194 >gi|329850294|ref|ZP_08265139.1| ribonuclease HII family protein [Asticcacaulis biprosthecum C19] gi|328840609|gb|EGF90180.1| ribonuclease HII family protein [Asticcacaulis biprosthecum C19] Length = 204 Score = 154 bits (390), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 87/185 (47%), Positives = 112/185 (60%), Gaps = 1/185 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 V G+DE GRG AGP+ VAA+ILDP P GI+DSK ++ +R +L I +AI S+ Sbjct: 14 VCGVDEAGRGPCAGPLCVAAVILDPARTPEGIDDSKALTEARRFQLEPLIKHAAIAWSVI 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + S ID NI ATL+ + AV L ALIDG P+ L A AVI GD++SL Sbjct: 74 TMSTDDIDSMNILAATLEGMSRAVMALNPNAHHALIDGNRCPKQLSISATAVIGGDALSL 133 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASI+AK RDR+M YP YGF H GY T H + ++ GPS +HR ++ L Sbjct: 134 SIAAASILAKTARDRIMIELDAVYPQYGFKRHKGYQTGAHLEALRVHGPSPVHRKSWATL 193 Query: 205 RNLSV 209 R LS+ Sbjct: 194 RQLSL 198 >gi|258645842|ref|ZP_05733311.1| ribonuclease HII [Dialister invisus DSM 15470] gi|260403214|gb|EEW96761.1| ribonuclease HII [Dialister invisus DSM 15470] Length = 256 Score = 154 bits (390), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 91/197 (46%), Positives = 136/197 (69%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +E E+ +K + VAGIDEVGRG LAGPV VAA+IL P+ G+NDSKK++ ++REE+ Sbjct: 56 YEPESSFYKKGLEYVAGIDEVGRGPLAGPVTVAAVILKPHFFIAGLNDSKKVAPRRREEI 115 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +KI +A+ ISI S S + ID NI+ AT++A+Y AV NL++ P++ ++D ++P P Sbjct: 116 AKKIHETAVDISIVSLSPEEIDMRNIYAATMEAMYRAVRNLKIQPQAVIVD--AMPLHFP 173 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +++ GD+ S S+AAASI+AKV RD LM K YP YGF + GY TA+H + I+ Sbjct: 174 VPSLSLVHGDAKSASVAAASIVAKVHRDHLMDEYDKVYPGYGFSQNKGYGTAEHIEAIRT 233 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 234 LGITPIHRKSFEPVKSM 250 >gi|16759220|ref|NP_454837.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16763620|ref|NP_459235.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29140770|ref|NP_804112.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412503|ref|YP_149578.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167990117|ref|ZP_02571217.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168230539|ref|ZP_02655597.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168244998|ref|ZP_02669930.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194442556|ref|YP_002039470.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194447841|ref|YP_002044220.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469389|ref|ZP_03075373.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197262827|ref|ZP_03162901.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197361438|ref|YP_002141074.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243184|ref|YP_002214191.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388767|ref|ZP_03215379.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|207855748|ref|YP_002242399.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213163685|ref|ZP_03349395.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213418465|ref|ZP_03351531.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425956|ref|ZP_03358706.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580323|ref|ZP_03362149.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213648458|ref|ZP_03378511.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|238911296|ref|ZP_04655133.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289825702|ref|ZP_06544870.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|61234136|sp|P0A2C1|RNH2_SALTY RecName: Full=Ribonuclease HII; Short=RNase HII gi|61234141|sp|P0A2C2|RNH2_SALTI RecName: Full=Ribonuclease HII; Short=RNase HII gi|73917833|sp|Q5PD71|RNH2_SALPA RecName: Full=Ribonuclease HII; Short=RNase HII gi|238689913|sp|B5BAP0|RNH2_SALPK RecName: Full=Ribonuclease HII; Short=RNase HII gi|238690313|sp|B5FJ30|RNH2_SALDC RecName: Full=Ribonuclease HII; Short=RNase HII gi|238690458|sp|B5R422|RNH2_SALEP RecName: Full=Ribonuclease HII; Short=RNase HII gi|238690680|sp|B4TK58|RNH2_SALHS RecName: Full=Ribonuclease HII; Short=RNase HII gi|238693524|sp|B4SV12|RNH2_SALNS RecName: Full=Ribonuclease HII; Short=RNase HII gi|25289252|pir||AH0530 ribonuclease HII [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16418735|gb|AAL19194.1| RNAse HII [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16501511|emb|CAD08688.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi] gi|29136394|gb|AAO67961.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56126760|gb|AAV76266.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194401219|gb|ACF61441.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406145|gb|ACF66364.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455753|gb|EDX44592.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197092914|emb|CAR58343.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197241082|gb|EDY23702.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197937700|gb|ACH75033.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605865|gb|EDZ04410.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205331449|gb|EDZ18213.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335176|gb|EDZ21940.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336201|gb|EDZ22965.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|206707551|emb|CAR31825.1| Ribonuclease HII [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261245462|emb|CBG23252.1| RNase HII [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991921|gb|ACY86806.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156857|emb|CBW16333.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911200|dbj|BAJ35174.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222186|gb|EFX47258.1| Ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128550|gb|ADX15980.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326621934|gb|EGE28279.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332987182|gb|AEF06165.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 198 Score = 154 bits (390), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 112/182 (61%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LY++I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLSLYDEIKEKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG PE LP + AV+KGDS Sbjct: 72 RAEAHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPE-LPVPSMAVVKGDSRVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H + + + G + HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAQYGATAHHRRSFAPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|227326550|ref|ZP_03830574.1| ribonuclease HII [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 198 Score = 154 bits (390), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 85/182 (46%), Positives = 114/182 (62%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSK++S K+R LY++I A+ S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPTRPIVGLADSKQLSEKRRLSLYDEIKEKALAWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L ++P LIDG P LP A AV+KGDS Sbjct: 73 RAEPEEIDQLNILHATMLAMQRAVAGLAIVPDFVLIDGNRCPA-LPMSAQAVVKGDSRVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M +++P YGF H GYPTA H + + G + HR +F P+ Sbjct: 132 EISAASIMAKVTRDREMVELDQRFPAYGFAQHKGYPTAFHLEKLAALGATEFHRRSFAPV 191 Query: 205 RN 206 + Sbjct: 192 KR 193 >gi|315179359|gb|ADT86273.1| ribonuclease HII [Vibrio furnissii NCTC 11218] Length = 206 Score = 154 bits (390), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 88/183 (48%), Positives = 115/183 (62%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPN+ G+NDSKK+S KKR L +I A+ S+ Sbjct: 21 IAGVDEVGRGPLVGDVVTAAVILDPNHPIEGLNDSKKLSEKKRLALLPEIQQKALAWSVG 80 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S Q ID+ NI +AT+ A+ AV+ L + P L+DG IP LP A AV+KGD Sbjct: 81 RCSPQEIDELNIFQATMLAMQRAVDGLAIKPDLVLVDGNKIP-SLPMDAQAVVKGDLRVA 139 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKV RD+ M K YP +GF H GYPT H + I++ G HR +F P+ Sbjct: 140 QISAASIIAKVVRDQEMEELDKVYPQFGFAKHKGYPTKAHFEAIEQHGVIDQHRRSFGPV 199 Query: 205 RNL 207 + + Sbjct: 200 KRV 202 >gi|149374423|ref|ZP_01892197.1| ribonuclease HII [Marinobacter algicola DG893] gi|149361126|gb|EDM49576.1| ribonuclease HII [Marinobacter algicola DG893] Length = 225 Score = 154 bits (390), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 84/182 (46%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS-SAIISIS 84 +AG+DEVGRG L G VV AA+IL+P G+ DSKK++ K+RE LYE+I +A S+ Sbjct: 18 LAGVDEVGRGPLVGAVVTAAVILNPERPIPGLADSKKLTDKRREALYEQIIERAASWSLG 77 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 ID+ NI +AT+ A+ AV L V P L+DG P + V+KGDS Sbjct: 78 RCEADEIDRLNIFQATMVAMERAVAGLHVEPEYVLVDGNRCPR-WRWASEPVVKGDSRVE 136 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASIIAKVTRDR M + H+++P+YGF SH GYPT H + + G + HR +FRP+ Sbjct: 137 AISAASIIAKVTRDREMAVLHEEFPEYGFASHKGYPTPVHLEALGRLGATAYHRRSFRPV 196 Query: 205 RN 206 + Sbjct: 197 QE 198 >gi|325262275|ref|ZP_08129012.1| ribonuclease HII [Clostridium sp. D5] gi|324032107|gb|EGB93385.1| ribonuclease HII [Clostridium sp. D5] Length = 254 Score = 154 bits (389), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 94/196 (47%), Positives = 122/196 (62%), Gaps = 6/196 (3%) Query: 11 HFELEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 LE M R + + + GIDEVGRG LAGPVV A+IL + INDSKK+S K Sbjct: 53 RLRLEQMKRYEKKYDEHTFICGIDEVGRGPLAGPVVAGAVILPKDCEILYINDSKKLSAK 112 Query: 67 KREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KREELY++I A+ + I AS IDK NI +AT +A+ AV+ L+ P L D +I Sbjct: 113 KREELYDEIMDKAVATGIGMASPARIDKINILQATYEAMRIAVQELKTAPTLLLNDAVTI 172 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + +IKGD+ S+SIAAASIIAKVTRDRLM K P YGF + GY +A H Sbjct: 173 P-GITLPQVPIIKGDAKSVSIAAASIIAKVTRDRLMLEYDKILPGYGFAENKGYGSAAHI 231 Query: 186 QVIKEKGPSCIHRLTF 201 + +K+ GP+ IHR++F Sbjct: 232 EALKKMGPTPIHRVSF 247 >gi|296101352|ref|YP_003611498.1| ribonuclease HII [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055811|gb|ADF60549.1| ribonuclease HII [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 198 Score = 154 bits (389), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 112/182 (61%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L+++I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIIGLNDSKKLSEKRRLALFDEIQEKALAWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L++ P LIDG P LP + AV+KGDS Sbjct: 72 RAEPHEIDELNILHATMLAMQRAVAGLKIAPEYVLIDGNRCPA-LPVPSMAVVKGDSRVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKVTRD M YP YGF H GYPTA H + + E G + HR +F P+ Sbjct: 131 EISAASIIAKVTRDAEMAALDLTYPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|153874551|ref|ZP_02002729.1| Ribonuclease HII [Beggiatoa sp. PS] gi|152068988|gb|EDN67274.1| Ribonuclease HII [Beggiatoa sp. PS] Length = 197 Score = 154 bits (389), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 82/183 (44%), Positives = 118/183 (64%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG LAGPV+ AA+ILD + G+ DSK +S K+RE L ++I A+ ++ Sbjct: 10 IAGVDEVGRGPLAGPVIAAAVILDEAHPIVGLADSKTLSEKRREALAKEIRQRALAYALG 69 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID NI +A+L A+ AV+NL ++P L+DG+ P+ L C A+I+GD Sbjct: 70 RAEVEEIDHINILQASLLAMQRAVKNLPIVPEHVLVDGKFCPQ-LDCSVEAIIQGDKKVQ 128 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD MR YP YGF +H GYPT H++ ++ G + IHR +F P+ Sbjct: 129 VISAASILAKVVRDEEMREMDHLYPGYGFAAHKGYPTRAHREALQRLGATVIHRRSFAPV 188 Query: 205 RNL 207 R + Sbjct: 189 RQV 191 >gi|53719754|ref|YP_108740.1| ribonuclease HII [Burkholderia pseudomallei K96243] gi|126441923|ref|YP_001059454.1| ribonuclease HII [Burkholderia pseudomallei 668] gi|237812793|ref|YP_002897244.1| ribonuclease HII [Burkholderia pseudomallei MSHR346] gi|254197441|ref|ZP_04903863.1| ribonuclease HII [Burkholderia pseudomallei S13] gi|81379508|sp|Q63T26|RNH2_BURPS RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225177|sp|A3NAT3|RNH2_BURP6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|52210168|emb|CAH36147.1| ribonuclease HII [Burkholderia pseudomallei K96243] gi|126221416|gb|ABN84922.1| ribonuclease HII [Burkholderia pseudomallei 668] gi|169654182|gb|EDS86875.1| ribonuclease HII [Burkholderia pseudomallei S13] gi|237504589|gb|ACQ96907.1| ribonuclease HII [Burkholderia pseudomallei MSHR346] Length = 214 Score = 154 bits (389), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 123/182 (67%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 V G+DE GRG LAGPVV AA++LDP G++DSK +S KKRE L+++I A+ S++ Sbjct: 28 VCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVVHALAYSVA 87 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS + ID NI AT+ A+ AVE L V+P A IDG P L ++ A++ GD++ Sbjct: 88 SASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM-LAIRSEAIVGGDALVP 146 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI+AASI+AKVTRDR++ H+++P YGFD+H GY T +H ++E GP HR +F P+ Sbjct: 147 SISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAPV 206 Query: 205 RN 206 R Sbjct: 207 RE 208 >gi|300715410|ref|YP_003740213.1| ribonuclease HII [Erwinia billingiae Eb661] gi|299061246|emb|CAX58355.1| Ribonuclease HII [Erwinia billingiae Eb661] Length = 207 Score = 154 bits (389), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 113/182 (62%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A+ S+ Sbjct: 12 IAGVDEVGRGPLVGAVVTAAVILDPARPIVGLADSKKLSEKRRLALYDEIVEKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L + P LIDG P L + AV+KGDS+ Sbjct: 72 RAEPEEIDRLNILHATMLAMQRAVAGLHICPDFVLIDGNRCPA-LAMPSLAVVKGDSLVR 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKVTRDR M +P YGF H GYPTA H + + + G + HR +F P+ Sbjct: 131 EISAASIIAKVTRDREMSELDVLFPQYGFAQHKGYPTALHMEKLAQHGVTPHHRRSFAPV 190 Query: 205 RN 206 RN Sbjct: 191 RN 192 >gi|333011022|gb|EGK30441.1| ribonuclease HII family protein [Shigella flexneri K-272] gi|333021817|gb|EGK41066.1| ribonuclease HII family protein [Shigella flexneri K-227] Length = 198 Score = 154 bits (389), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 90/186 (48%), Positives = 114/186 (61%), Gaps = 2/186 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 +M VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LYE+I A+ Sbjct: 8 HMQLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEEIKEKALS 67 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 S+ A ID+ NI AT+ A+ AV L + P LIDG P+ LP A AV+KGD Sbjct: 68 WSLGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMAVVKGD 126 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR + Sbjct: 127 SRVPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRS 186 Query: 201 FRPLRN 206 F P++ Sbjct: 187 FGPVKR 192 >gi|115380723|ref|ZP_01467629.1| ribonuclease HII [Stigmatella aurantiaca DW4/3-1] gi|310820560|ref|YP_003952918.1| ribonuclease hII [Stigmatella aurantiaca DW4/3-1] gi|115362268|gb|EAU61597.1| ribonuclease HII [Stigmatella aurantiaca DW4/3-1] gi|309393632|gb|ADO71091.1| Ribonuclease HII [Stigmatella aurantiaca DW4/3-1] Length = 282 Score = 154 bits (389), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 87/197 (44%), Positives = 120/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI-SHKKREE 70 E + E+ + VAG+DE G LAGPVV AA IL N G++DSKKI ++REE Sbjct: 67 LRYETELWEQGLERVAGVDEAGMAPLAGPVVAAAAILPRNYRLKGLDDSKKILDAERREE 126 Query: 71 LYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L + A+ ++ A + ID+ NI+ A L A+ AV L + P AL+D R IPE Sbjct: 127 LAAALKRDAVAWAVGIAEVEEIDRLNIYHAGLLAMRRAVLGLGLTPDYALVDARKIPE-C 185 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 PC +I+GD++S+SIAAAS++AK +RDR+M +YP YG H GYPT +H Q ++ Sbjct: 186 PCPQRGIIRGDALSMSIAAASVLAKTSRDRMMGELDARYPGYGLAVHKGYPTPQHVQALR 245 Query: 190 EKGPSCIHRLTFRPLRN 206 EKG IHR +F P+R Sbjct: 246 EKGVLPIHRRSFGPVRE 262 >gi|23098995|ref|NP_692461.1| ribonuclease H [Oceanobacillus iheyensis HTE831] gi|39932410|sp|Q8EQZ4|RNH2_OCEIH RecName: Full=Ribonuclease HII; Short=RNase HII gi|22777223|dbj|BAC13496.1| ribonuclease H [Oceanobacillus iheyensis HTE831] Length = 261 Score = 154 bits (389), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 94/195 (48%), Positives = 124/195 (63%), Gaps = 6/195 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +E EA R N + +AG+DEVGRG LAGPVV AA+IL + GINDSKK+S +R E Sbjct: 61 YEKEAY-RNGNHY-IAGVDEVGRGPLAGPVVAAAVILPKDFQLLGINDSKKLSEVQRNEF 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-EDL 129 I AI IS + IDK NI++A+ A+ A+ LQ P ALID ++P E L Sbjct: 119 SHYIKQHAIAYQISFIDNTIIDKINIYEASKQAMKEAISGLQPYPDHALID--AVPLEGL 176 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C A+IKGD+ S+ IAAAS++AKV RD M+ H+KYP YGF+S++GY T +H Q I+ Sbjct: 177 NCTYEAIIKGDAESVHIAAASVLAKVARDDWMKELHEKYPLYGFNSNMGYGTKEHLQAIE 236 Query: 190 EKGPSCIHRLTFRPL 204 G + HR +F PL Sbjct: 237 TYGVTPYHRYSFAPL 251 >gi|300113760|ref|YP_003760335.1| ribonuclease H [Nitrosococcus watsonii C-113] gi|299539697|gb|ADJ28014.1| Ribonuclease H [Nitrosococcus watsonii C-113] Length = 195 Score = 154 bits (389), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 82/183 (44%), Positives = 110/183 (60%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG LAGPV+ A+ILDP G+ DSK+++ RE L I AI ++ Sbjct: 10 IAGVDEVGRGPLAGPVIAGAVILDPERPISGVKDSKQLTAPARERLAALIQVQAIAWALG 69 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI +A+L A+ A+ L V+P L+DGR P + C A++KGD + Sbjct: 70 RAEAVEIDQLNIFQASLLAMERAIAALSVVPDLVLVDGRHCPLTV-CPVRAIVKGDQRVM 128 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I AASI+AKV RD M + YP YGF +H GYPT H +K GP IHR +FRP+ Sbjct: 129 AIGAASIVAKVARDAEMIAFEESYPGYGFGTHKGYPTRAHLAALKALGPCSIHRRSFRPV 188 Query: 205 RNL 207 R Sbjct: 189 RRF 191 >gi|219871844|ref|YP_002476219.1| ribonuclease HII [Haemophilus parasuis SH0165] gi|219692048|gb|ACL33271.1| ribonuclease HII [Haemophilus parasuis SH0165] Length = 195 Score = 154 bits (389), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 86/180 (47%), Positives = 115/180 (63%), Gaps = 2/180 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPN G+ DSKK+S K+R L E+I + A+ S+ Sbjct: 10 IAGVDEVGRGPLVGAVVTAAVILDPNQPIEGLADSKKLSEKRRLALAEEIKAKALCWSLG 69 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L++ P L+DG IP LP A AV+KGDS+ Sbjct: 70 RAEPDEIDQLNIFHATMLAMQRAVAGLRIQPDFVLVDGNRIP-TLPMPAQAVVKGDSLVA 128 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M K+YP+YGF H GYPT H + ++ G + HR +F P+ Sbjct: 129 EISAASILAKVARDQEMDELDKQYPEYGFAQHKGYPTKLHFEKLESLGVTPYHRKSFAPV 188 >gi|331266372|ref|YP_004326002.1| ribonuclease HII [Streptococcus oralis Uo5] gi|326683044|emb|CBZ00661.1| ribonuclease HII [Streptococcus oralis Uo5] Length = 259 Score = 154 bits (389), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 91/203 (44%), Positives = 125/203 (61%), Gaps = 9/203 (4%) Query: 12 FELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 LE M+ EK ++ +AG+DEVGRG LAGPVV AA+IL G+NDSKKI Sbjct: 52 LRLETMLSYEKELYKQGLSLIAGVDEVGRGPLAGPVVAAAVILPKKCKIKGLNDSKKIPK 111 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KK E+Y + A+ I I ++ ID+ NI++AT A+ A+ L P LID Sbjct: 112 KKHLEIYHAVQDQALAIGIGIMDNEVIDQVNIYEATKLAMKEAISQLSPQPEHLLIDAMK 171 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + +LP A+IKGD+ SLSIAAASI+AKVTRD LM+ +YP Y F ++ GY TAKH Sbjct: 172 L--ELPILQTAIIKGDANSLSIAAASIVAKVTRDELMKEYDNQYPGYDFTANAGYGTAKH 229 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 + +++ G + IHR +F P++ L Sbjct: 230 LEGLEKLGVTPIHRTSFEPVKTL 252 >gi|303258069|ref|ZP_07344077.1| ribonuclease HII [Burkholderiales bacterium 1_1_47] gi|330998718|ref|ZP_08322447.1| ribonuclease HII [Parasutterella excrementihominis YIT 11859] gi|302859088|gb|EFL82171.1| ribonuclease HII [Burkholderiales bacterium 1_1_47] gi|329576457|gb|EGG57969.1| ribonuclease HII [Parasutterella excrementihominis YIT 11859] Length = 213 Score = 154 bits (389), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 83/180 (46%), Positives = 119/180 (66%), Gaps = 2/180 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 V G+DE GRG LAGPVV AA+IL+P++ G+ DSKK++ RE L E+I + A+ +I+ Sbjct: 16 VCGVDEAGRGPLAGPVVAAAVILNPDHPIEGLRDSKKLTAHAREVLAEQIKTHALAWAIA 75 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 +S ID+ NI +AT+ A+ AV L P L+DG +PE LP +A ++KGD + Sbjct: 76 ESSVADIDRMNILQATMAAMRKAVLQLDPKPDLVLVDGNRLPE-LPFRAEPIVKGDDLIP 134 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AK RD LM+I YP YGF+ H GY TA H +++++ GP +HR+TF P+ Sbjct: 135 EISAASILAKTYRDALMKILGGMYPKYGFEQHAGYGTAHHLKMLEKWGPCPVHRMTFGPV 194 >gi|256003759|ref|ZP_05428747.1| Ribonuclease H [Clostridium thermocellum DSM 2360] gi|281417482|ref|ZP_06248502.1| Ribonuclease H [Clostridium thermocellum JW20] gi|255992320|gb|EEU02414.1| Ribonuclease H [Clostridium thermocellum DSM 2360] gi|281408884|gb|EFB39142.1| Ribonuclease H [Clostridium thermocellum JW20] gi|316940489|gb|ADU74523.1| Ribonuclease H [Clostridium thermocellum DSM 1313] Length = 261 Score = 154 bits (389), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 89/194 (45%), Positives = 123/194 (63%), Gaps = 7/194 (3%) Query: 14 LEAMVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 LE + EK + +AGIDE GRG LAGPVV AA+IL + G+NDSKK++ +R Sbjct: 63 LEMCIYEKEAYQRGYKLIAGIDEAGRGPLAGPVVAAAVILPQDVFIEGLNDSKKLTENQR 122 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E+L++ I AI + I + ID+ NI AT A+ AV NL+ +P ID + + Sbjct: 123 EKLFDVINDKAIGVGIGIVDEKQIDEINILNATKKAMKLAVGNLKPVPDILFIDSLKL-D 181 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D+ + +++KGD+ S+SIAAASIIAKVTRDR++R KKYP YGF H GY T +H + Sbjct: 182 DINIEQNSIVKGDAKSVSIAAASIIAKVTRDRILREMDKKYPMYGFARHKGYGTGEHIEA 241 Query: 188 IKEKGPSCIHRLTF 201 IK+ G IHR++F Sbjct: 242 IKKYGICPIHRVSF 255 >gi|320540045|ref|ZP_08039701.1| putative ribonuclease HII, degrades RNA of DNA-RNA hybrids [Serratia symbiotica str. Tucson] gi|320029894|gb|EFW11917.1| putative ribonuclease HII, degrades RNA of DNA-RNA hybrids [Serratia symbiotica str. Tucson] Length = 197 Score = 154 bits (389), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 87/183 (47%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LYE+I + A+ S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPAQPIVGLADSKKLSEKRRLALYEEIIAKALSWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L ++P LIDG P LP ++ AV+KGDS Sbjct: 73 RAEPEEIDRLNILHATMLAMQRAVAGLPIVPDMVLIDGNRCP-TLPMRSQAVVKGDSRVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M + +P YGF H GYPTA H + + G + HR +F P+ Sbjct: 132 EISAASILAKVTRDREMIELDRVFPGYGFAQHKGYPTAFHLEQLAVLGATEHHRRSFAPV 191 Query: 205 RNL 207 R + Sbjct: 192 RRV 194 >gi|52080208|ref|YP_078999.1| ribonuclease HII [Bacillus licheniformis ATCC 14580] gi|52785585|ref|YP_091414.1| ribonuclease HII [Bacillus licheniformis ATCC 14580] gi|319646013|ref|ZP_08000243.1| ribonuclease HII [Bacillus sp. BT1B_CT2] gi|73917597|sp|Q65JP3|RNH2_BACLD RecName: Full=Ribonuclease HII; Short=RNase HII gi|52003419|gb|AAU23361.1| ribonuclease HII [Bacillus licheniformis ATCC 14580] gi|52348087|gb|AAU40721.1| RnhB [Bacillus licheniformis ATCC 14580] gi|317391763|gb|EFV72560.1| ribonuclease HII [Bacillus sp. BT1B_CT2] Length = 255 Score = 154 bits (389), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 87/193 (45%), Positives = 119/193 (61%), Gaps = 3/193 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +R + +AGIDE GRG LAGPVV AA+IL + G+ DSKK+S +KRE+ Y Sbjct: 62 FERSLRARGYQYIAGIDEAGRGPLAGPVVAAAVILKEDCEILGLTDSKKLSKQKREDYYS 121 Query: 74 KITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I +A + + A ID+ NI++A+ A+ AV+ L V P LID S+ D + Sbjct: 122 YIMEEAAAVGVGIADAHEIDELNIYEASKAAMLKAVQALDVAPDYLLIDAMSLAVD--TE 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S SIAA + IAKVTRDRLM +KYP YGF+ H GY T +H + + G Sbjct: 180 QSSIIKGDAKSASIAAGACIAKVTRDRLMDEYAEKYPLYGFEKHKGYGTKEHLNALAKYG 239 Query: 193 PSCIHRLTFRPLR 205 PS IHR +F P++ Sbjct: 240 PSPIHRRSFAPVK 252 >gi|76809916|ref|YP_333960.1| ribonuclease HII [Burkholderia pseudomallei 1710b] gi|254189278|ref|ZP_04895789.1| ribonuclease HII [Burkholderia pseudomallei Pasteur 52237] gi|254259229|ref|ZP_04950283.1| ribonuclease HII [Burkholderia pseudomallei 1710a] gi|97182323|sp|Q3JR43|RNH2_BURP1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|76579369|gb|ABA48844.1| ribonuclease HII [Burkholderia pseudomallei 1710b] gi|157936957|gb|EDO92627.1| ribonuclease HII [Burkholderia pseudomallei Pasteur 52237] gi|254217918|gb|EET07302.1| ribonuclease HII [Burkholderia pseudomallei 1710a] Length = 214 Score = 154 bits (389), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 123/182 (67%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 V G+DE GRG LAGPVV AA++LDP G++DSK +S KKRE L+++I + A+ S++ Sbjct: 28 VCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAHALAYSVA 87 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS + ID NI AT+ A+ AVE L V+P A IDG P L ++ A++ GD++ Sbjct: 88 SASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM-LAIRSEAIVGGDALVP 146 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI+AASI+AKVTRDR + H+++P YGFD+H GY T +H ++E GP HR +F P+ Sbjct: 147 SISAASILAKVTRDRTLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAPV 206 Query: 205 RN 206 R Sbjct: 207 RE 208 >gi|154686022|ref|YP_001421183.1| ribonuclease HII [Bacillus amyloliquefaciens FZB42] gi|166225167|sp|A7Z4M6|RNH2_BACA2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|154351873|gb|ABS73952.1| RnhB [Bacillus amyloliquefaciens FZB42] Length = 255 Score = 154 bits (389), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 85/193 (44%), Positives = 118/193 (61%), Gaps = 3/193 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + +K +AG+DE GRG LAGPVV A+IL G+ DSKK+S KK EE Y + Sbjct: 63 ERLSSKKGFRLIAGVDEAGRGPLAGPVVAGAVILPAECEILGLTDSKKLSEKKLEEYYSR 122 Query: 75 ITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 IT +A + + ID+ NI++A A+ AV L P L+D ++P D+P Sbjct: 123 ITEEAAAVGVGIVHADVIDRINIYEAARLAMVKAVNALTETPDYLLVDAMTLPLDIP--Q 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +VIKGD+ S+SIAA + IAKVTRDRLM K YP YGF+ + GY T +H + ++ GP Sbjct: 181 SSVIKGDAKSVSIAAGACIAKVTRDRLMAEYAKTYPMYGFEKNKGYGTKEHLEALQAYGP 240 Query: 194 SCIHRLTFRPLRN 206 + IHR TF P+++ Sbjct: 241 TTIHRKTFAPVQS 253 >gi|295098672|emb|CBK87762.1| RNase HII [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 198 Score = 154 bits (389), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 112/182 (61%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L+++I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALFDEIKEKALAWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID NI AT+ A+ AV L+++P LIDG P LP + AV+KGDS Sbjct: 72 RAEPDEIDDLNILHATMLAMQRAVAGLKIVPEYVLIDGNRCPA-LPMPSMAVVKGDSRVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKVTRD M YP YGF H GYPTA H + + E G + HR +F P+ Sbjct: 131 EISAASIIAKVTRDAEMAALDLTYPAYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|152968777|ref|YP_001333886.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893179|ref|YP_002917913.1| ribonuclease HII [Klebsiella pneumoniae NTUH-K2044] gi|262044746|ref|ZP_06017793.1| ribonuclease HII [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330001662|ref|ZP_08304088.1| ribonuclease HII [Klebsiella sp. MS 92-3] gi|166225193|sp|A6T4Y5|RNH2_KLEP7 RecName: Full=Ribonuclease HII; Short=RNase HII gi|150953626|gb|ABR75656.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545495|dbj|BAH61846.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259037896|gb|EEW39120.1| ribonuclease HII [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328537604|gb|EGF63824.1| ribonuclease HII [Klebsiella sp. MS 92-3] Length = 199 Score = 154 bits (389), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 87/181 (48%), Positives = 113/181 (62%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L+++I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPAKPIVGLNDSKKLSEKRRLALFDEIKEKALCWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L ++P LIDG P LP + AV+KGDS Sbjct: 72 RAEPHEIDELNILHATMLAMQRAVAGLSIVPEFVLIDGNRCP-SLPMPSQAVVKGDSRVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H Q ++E G + HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMATLDLAFPHYGFAQHKGYPTAVHLQKLQEHGATEHHRRSFGPV 190 Query: 205 R 205 + Sbjct: 191 K 191 >gi|324994471|gb|EGC26384.1| ribonuclease HII [Streptococcus sanguinis SK678] Length = 254 Score = 154 bits (389), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 91/204 (44%), Positives = 127/204 (62%), Gaps = 9/204 (4%) Query: 11 HFELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 LE M+R EK ++ +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI Sbjct: 51 ELRLEQMLRYEKELYKAGYQAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIP 110 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KK +E+Y+ + A+ + I ++ ID+ NI++AT A+ A+ L P LID Sbjct: 111 KKKHQEIYQAVLDKALAVGIGLIDNEIIDRVNIYEATKLAMKEALSVLSHKPDYLLIDAM 170 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + D+P ++ +IKGD+ S SIAAASI+AKVTRD+LM K+YP Y F + GY T Sbjct: 171 KLDVDIPQES--IIKGDANSQSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKS 228 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H Q ++ G + IHR TF P++++ Sbjct: 229 HLQGLERHGVTPIHRKTFEPIKSM 252 >gi|157376279|ref|YP_001474879.1| ribonuclease H [Shewanella sediminis HAW-EB3] gi|189043661|sp|A8FY28|RNH2_SHESH RecName: Full=Ribonuclease HII; Short=RNase HII gi|157318653|gb|ABV37751.1| Ribonuclease H [Shewanella sediminis HAW-EB3] Length = 213 Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 87/187 (46%), Positives = 115/187 (61%), Gaps = 8/187 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DEVGRG L G VV AA+ILDP G+NDSKK+S KKRE L+ +I A+ ISI Sbjct: 21 AGVDEVGRGPLVGNVVTAAVILDPTKPITGLNDSKKLSEKKREALFTEIHEKALAISIGY 80 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-------DLPCQAFAVIK 138 AS + ID+ NI AT+ A+ AV L + P S L+DG P+ D ++ A+IK Sbjct: 81 ASPEEIDELNILHATMLAMQRAVAGLDMAPTSVLVDGNRTPDFSHGEDTDRNIESHAIIK 140 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD + I+AASI+AKV RDR M + ++P YGF H GYPT H + + G HR Sbjct: 141 GDGLVAGISAASIVAKVIRDREMDLLDMEHPQYGFAKHKGYPTKAHFEALALHGVLPEHR 200 Query: 199 LTFRPLR 205 +FRP++ Sbjct: 201 KSFRPVK 207 >gi|121594909|ref|YP_986805.1| ribonuclease HII [Acidovorax sp. JS42] gi|222110440|ref|YP_002552704.1| ribonuclease hii [Acidovorax ebreus TPSY] gi|189043530|sp|A1W904|RNH2_ACISJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807973|sp|B9MGN1|RNH2_DIAST RecName: Full=Ribonuclease HII; Short=RNase HII gi|120606989|gb|ABM42729.1| RNase HII [Acidovorax sp. JS42] gi|221729884|gb|ACM32704.1| Ribonuclease H [Acidovorax ebreus TPSY] Length = 209 Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 85/181 (46%), Positives = 121/181 (66%), Gaps = 4/181 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DE GRG LAGPVV AA+ILD G+ DSK ++ +RE+LY++I + A+ SI+ Sbjct: 21 VAGVDEAGRGPLAGPVVAAAVILDDLQPIAGLADSKVLTAARREKLYDEIRAKALCCSIA 80 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 AS + ID+HNI +AT+ A+ AV L++ P L+DG +P D+P +A ++KGD++ Sbjct: 81 EASVEEIDQHNILQATMLAMRRAVLGLRLKPVRVLVDGNRLPPLDVPAEA--IVKGDALV 138 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR H++YP YGF H GY TA+H ++ G HR +F P Sbjct: 139 ASISAASILAKVTRDRWCAQLHQQYPVYGFAGHKGYGTAEHLAALEVHGACPQHRRSFAP 198 Query: 204 L 204 + Sbjct: 199 V 199 >gi|261253714|ref|ZP_05946287.1| ribonuclease HII [Vibrio orientalis CIP 102891] gi|260937105|gb|EEX93094.1| ribonuclease HII [Vibrio orientalis CIP 102891] Length = 205 Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 90/200 (45%), Positives = 121/200 (60%), Gaps = 12/200 (6%) Query: 17 MVREKNMWP----------VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 M +EK P +AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S K Sbjct: 1 MAKEKQELPPFEYPQGYQLIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEK 60 Query: 67 KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KR L +I A+ S+ S + ID+ NI +AT+ A+ A++ L V P LIDG Sbjct: 61 KRLALLPEIKQKALAWSVGRCSPEEIDQLNILQATMVAMQRAIDGLNVKPDLTLIDGNRC 120 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 PE L + AV+KGD I+AASIIAKV RD+ M K++P++GF H GYPT H Sbjct: 121 PE-LSMDSQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKQHPEFGFAKHKGYPTKAHF 179 Query: 186 QVIKEKGPSCIHRLTFRPLR 205 + I++ G HR +F+P++ Sbjct: 180 EAIEQHGVIEQHRKSFKPVK 199 >gi|238019255|ref|ZP_04599681.1| hypothetical protein VEIDISOL_01119 [Veillonella dispar ATCC 17748] gi|237863954|gb|EEP65244.1| hypothetical protein VEIDISOL_01119 [Veillonella dispar ATCC 17748] Length = 265 Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 88/197 (44%), Positives = 131/197 (66%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ E M ++ M+ VAG+DEVGRG +AGPV VAA+IL P + G+NDSKK++ +KRE L Sbjct: 63 YDYEGMFYDQGMYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKRETL 122 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ +S S + ID+ NI++AT A+Y A+ L V + + D +P DL Sbjct: 123 YDIIMKEAVAVSCISYGPEKIDELNIYEATRQAMYEAIRTLSVPAEAVVADAMKLP-DLT 181 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGDS S +IAAASIIAKVTRDR M+ +YP YGF H GY T H++ +++ Sbjct: 182 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDDEYPGYGFGIHKGYYTELHKEAVEQ 241 Query: 191 KGPSCIHRLTFRPLRNL 207 +G + +HR +F P++++ Sbjct: 242 QGVTPLHRKSFEPIKSI 258 >gi|260596603|ref|YP_003209174.1| ribonuclease HII [Cronobacter turicensis z3032] gi|260215780|emb|CBA28205.1| Ribonuclease HII [Cronobacter turicensis z3032] Length = 198 Score = 154 bits (388), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 89/182 (48%), Positives = 111/182 (60%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L G VV AA+ILDP N G+ DSKK+S K+R L+++I AI S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPLNPIVGLADSKKLSEKRRLALFDEIKEKAIAWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L V P LIDG P LP + AV+KGDS Sbjct: 72 RAEPHEIDELNILHATMLAMQRAVAGLAVTPEYVLIDGNRCPA-LPMPSMAVVKGDSRVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMAELDLTFPQYGFAQHKGYPTAFHLERLAEHGATAHHRRSFAPV 190 Query: 205 RN 206 R Sbjct: 191 RR 192 >gi|238916977|ref|YP_002930494.1| ribonuclease HII [Eubacterium eligens ATCC 27750] gi|238872337|gb|ACR72047.1| ribonuclease HII [Eubacterium eligens ATCC 27750] Length = 218 Score = 154 bits (388), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 92/193 (47%), Positives = 118/193 (61%), Gaps = 6/193 (3%) Query: 14 LEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 +EAM + M+ + GIDE GRG LAGPVV A+IL +NDSKK+S KKR+ Sbjct: 22 IEAMREYEEMYDTFSYICGIDEAGRGPLAGPVVAGAVILPKGKRILYVNDSKKLSEKKRD 81 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 EL++ I A+ I S + ID+ NI +AT +A++ AV L V P L D +IP Sbjct: 82 ELFDVIKEEALSYGIGIVSPERIDEINILQATYEAMHEAVNKLSVKPDILLNDAVTIP-G 140 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + + +IKGD+ SLSIA+ASI+AKVTRDRLM YP+YGF H GY T H + I Sbjct: 141 IDIKQIPIIKGDAKSLSIASASILAKVTRDRLMTEYDSLYPEYGFARHKGYGTKVHIEAI 200 Query: 189 KEKGPSCIHRLTF 201 KE GP IHR TF Sbjct: 201 KEYGPCPIHRRTF 213 >gi|331701419|ref|YP_004398378.1| ribonuclease H [Lactobacillus buchneri NRRL B-30929] gi|329128762|gb|AEB73315.1| Ribonuclease H [Lactobacillus buchneri NRRL B-30929] Length = 257 Score = 154 bits (388), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 86/198 (43%), Positives = 126/198 (63%), Gaps = 3/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F+ E + + VAG+DEVGRG LAGPVV AA+IL + +NDSK+++ +R EL Sbjct: 60 FKYERSFWHQGLQYVAGVDEVGRGPLAGPVVAAAVILPHDFDLVSVNDSKQLTPTQRAEL 119 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 I++ A+ + I S + ID+ NI++AT A+ AVE+L P ++D IP +P Sbjct: 120 APLISAEALSVGIGSVDNHGIDELNIYQATRVAMKQAVESLTPQPDEIIVDAMQIP--VP 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +IKGD+ S+S++AASI+AKV RD LM K+YP+Y F + GY TAKH +KE Sbjct: 178 IRQTRLIKGDAKSISVSAASIVAKVYRDHLMDEYAKQYPEYDFPHNAGYGTAKHLAALKE 237 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP+ IHR++F P++ S Sbjct: 238 LGPTPIHRMSFAPVKKFS 255 >gi|315640709|ref|ZP_07895811.1| ribonuclease HII [Enterococcus italicus DSM 15952] gi|315483464|gb|EFU73958.1| ribonuclease HII [Enterococcus italicus DSM 15952] Length = 255 Score = 154 bits (388), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 91/195 (46%), Positives = 123/195 (63%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + K VAGIDEVGRG LAGPVV AA+IL P G+NDSK++ +RE L+ Sbjct: 61 EFEKIAWSKGAQAVAGIDEVGRGPLAGPVVAAAVILPPARQFLGLNDSKQVPEAQREALF 120 Query: 73 EKITSSAIISISSA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I+ AI S Q ID+ NI++A+ A+ A+E+L LID ++P +LP Sbjct: 121 QAISEQAIAIGIGIISPQCIDEVNIYEASKLAMMEAIEHLSTPADYLLIDAMTLPINLPQ 180 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGD+ S SIAAASIIAKVTRDR+M+ +YP Y F+ + GY TAKH +K Sbjct: 181 EK--LIKGDARSNSIAAASIIAKVTRDRMMKQYAIEYPGYDFEHNAGYGTAKHLAGLKAN 238 Query: 192 GPSCIHRLTFRPLRN 206 G + IHR +F P++N Sbjct: 239 GITPIHRKSFAPVKN 253 >gi|228998613|ref|ZP_04158200.1| Ribonuclease HII [Bacillus mycoides Rock3-17] gi|228761081|gb|EEM10040.1| Ribonuclease HII [Bacillus mycoides Rock3-17] Length = 272 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 94/194 (48%), Positives = 128/194 (65%), Gaps = 3/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y++ Sbjct: 78 EKALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYDE 137 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI I + S Q ID+ NI++AT A+ A+ NL P LID +P +P Sbjct: 138 IKEQAIAIGVGIVSPQVIDEINIYQATKRAMLDAIANLACTPEHLLIDAMKLPTPIP--Q 195 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ S+SI+AASIIAKVTRDR+M+ K+YP YGF+ H+GY T +H Q I+ G Sbjct: 196 TSIIKGDAKSISISAASIIAKVTRDRMMKELGKEYPAYGFEQHMGYGTKQHLQAIEMYGV 255 Query: 194 SCIHRLTFRPLRNL 207 HR TF P++++ Sbjct: 256 LEEHRKTFAPIKDM 269 >gi|330830741|ref|YP_004393693.1| ribonuclease HII [Aeromonas veronii B565] gi|328805877|gb|AEB51076.1| Ribonuclease HII [Aeromonas veronii B565] Length = 196 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 91/181 (50%), Positives = 121/181 (66%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L G VV AA+ILDP N G+NDSKK+S KKR L+++I A+ +I Sbjct: 11 VAGVDEVGRGPLVGDVVTAAVILDPANPIAGLNDSKKLSEKKRLALFDEIKEKALAWAIG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID+ NI AT+ A+ AV L+V P IDG P LP +A AV+KGDS+ Sbjct: 71 RASPAEIDELNILHATMLAMQRAVAGLKVTPELVFIDGNRCPA-LPMEARAVVKGDSLVA 129 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKVTRD M ++P+YGF H GYPTA+H ++ E+GP +R +F+P+ Sbjct: 130 AISAASILAKVTRDGEMTELDSRHPEYGFARHKGYPTAEHLAILAERGPLPEYRKSFKPV 189 Query: 205 R 205 R Sbjct: 190 R 190 >gi|125973279|ref|YP_001037189.1| ribonuclease HII [Clostridium thermocellum ATCC 27405] gi|189043587|sp|A3DDG7|RNH2_CLOTH RecName: Full=Ribonuclease HII; Short=RNase HII gi|125713504|gb|ABN51996.1| RNase HII [Clostridium thermocellum ATCC 27405] Length = 256 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 89/194 (45%), Positives = 123/194 (63%), Gaps = 7/194 (3%) Query: 14 LEAMVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 LE + EK + +AGIDE GRG LAGPVV AA+IL + G+NDSKK++ +R Sbjct: 58 LEMCIYEKEAYQRGYKLIAGIDEAGRGPLAGPVVAAAVILPQDVFIEGLNDSKKLTENQR 117 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E+L++ I AI + I + ID+ NI AT A+ AV NL+ +P ID + + Sbjct: 118 EKLFDVINDKAIGVGIGIVDEKQIDEINILNATKKAMKLAVGNLKPVPDILFIDSLKL-D 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D+ + +++KGD+ S+SIAAASIIAKVTRDR++R KKYP YGF H GY T +H + Sbjct: 177 DINIEQNSIVKGDAKSVSIAAASIIAKVTRDRILREMDKKYPMYGFARHKGYGTGEHIEA 236 Query: 188 IKEKGPSCIHRLTF 201 IK+ G IHR++F Sbjct: 237 IKKYGICPIHRVSF 250 >gi|239623747|ref|ZP_04666778.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521778|gb|EEQ61644.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 219 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 95/205 (46%), Positives = 122/205 (59%), Gaps = 8/205 (3%) Query: 8 ERPHFELEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 E+ LEAM + + + GIDE GRG LAGPV A+IL + +NDSKK+ Sbjct: 12 EKELARLEAMTEYEKEYGSSAFICGIDEAGRGPLAGPVAAGAVILPKDCRILYLNDSKKL 71 Query: 64 SHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S K+REEL+E+I A+ S+ A+ ID+ NI +AT +A+ AV L V P L D Sbjct: 72 SEKRREELFEEIKEKAVAWSVGIATPARIDEINILQATYEAMREAVGQLTVKPDVLLNDA 131 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 +IP DL +IKGD+ SLSIAAASI+AKVTRD +M + +P YGF H GY TA Sbjct: 132 VTIP-DLDILQVPIIKGDAKSLSIAAASILAKVTRDHMMAGYEEMFPGYGFAKHKGYGTA 190 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 H I+E GP IHR TF +RN Sbjct: 191 AHIAAIRELGPCPIHRRTF--IRNF 213 >gi|197104042|ref|YP_002129419.1| ribonuclease HII [Phenylobacterium zucineum HLK1] gi|196477462|gb|ACG76990.1| ribonuclease HII [Phenylobacterium zucineum HLK1] Length = 230 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 88/184 (47%), Positives = 111/184 (60%), Gaps = 4/184 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAII- 81 PV G+DE GRG AGPV A+ILD P +P G++DSKK+S K RE L E+I A+ Sbjct: 25 PVCGVDEAGRGPWAGPVCAGAVILDSNPRKVPKGLDDSKKLSAKAREALEEEIKEKAVAW 84 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 + AS I NI AT A+ A+E + V P AL+DG + DLPC+ V+ GD+ Sbjct: 85 GVGFASVSEIASLNILHATGLAMCRAIEAMAVQPAFALVDG-NYRFDLPCEVTTVVGGDA 143 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 S SIAAASI+AKV RDRLM YP YGF SH GY H + + GP IHRL + Sbjct: 144 KSKSIAAASILAKVARDRLMVEMDALYPGYGFASHKGYNAPSHVEALVSLGPCEIHRLAW 203 Query: 202 RPLR 205 RP++ Sbjct: 204 RPVK 207 >gi|295100799|emb|CBK98344.1| RNase HII [Faecalibacterium prausnitzii L2-6] Length = 214 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 83/176 (47%), Positives = 106/176 (60%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L GPV VAA ILDP +GINDSKK+S KKRE L+++I A+ I Sbjct: 28 AGVDEAGRGPLCGPVCVAACILDPEAPVYGINDSKKLSEKKREALFDQIVEKALAYRIVF 87 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ID+ NI AT+ + AVE L ++P L+DG IP L A V+KGD+ S S Sbjct: 88 VGPDIIDRDNILNATMGGMRQAVEGLDIVPNLVLVDGNRIPAGLTMPAQPVVKGDATSAS 147 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I AASI+AKV+RDR M K+YP Y H GY T H ++I + G +R +F Sbjct: 148 IGAASILAKVSRDRYMLELDKQYPQYQLAKHKGYGTKLHYELIAQYGIQPFYRRSF 203 >gi|228992565|ref|ZP_04152492.1| Ribonuclease HII [Bacillus pseudomycoides DSM 12442] gi|228767199|gb|EEM15835.1| Ribonuclease HII [Bacillus pseudomycoides DSM 12442] Length = 272 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 94/194 (48%), Positives = 128/194 (65%), Gaps = 3/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y++ Sbjct: 78 EKALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPKDFYIPGLNDSKKLSEAKRERFYDE 137 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI I + S Q ID+ NI++AT A+ A+ NL P LID +P +P Sbjct: 138 IKEQAIAIGVGIVSPQVIDEINIYQATKRAMLDAIANLACTPEHLLIDAMKLPTPIP--Q 195 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ S+SI+AASIIAKVTRDR+M+ K+YP YGF+ H+GY T +H Q I+ G Sbjct: 196 TSIIKGDAKSISISAASIIAKVTRDRMMKELGKEYPAYGFEQHMGYGTKQHLQAIEMYGV 255 Query: 194 SCIHRLTFRPLRNL 207 HR TF P++++ Sbjct: 256 LEEHRKTFAPIKDM 269 >gi|170023329|ref|YP_001719834.1| ribonuclease HII [Yersinia pseudotuberculosis YPIII] gi|238688489|sp|B1JQH4|RNH2_YERPY RecName: Full=Ribonuclease HII; Short=RNase HII gi|169749863|gb|ACA67381.1| Ribonuclease H [Yersinia pseudotuberculosis YPIII] Length = 198 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 85/183 (46%), Positives = 115/183 (62%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILDPN G+ DSKK+S K+R LY++IT A+ S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPNRPIVGLADSKKLSEKRRLSLYDEITEKALSWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI A + A+ AV L ++P LIDG P+ L + AV+KGDS Sbjct: 73 RAEPEEIDQLNILHAAMLAMQRAVSGLHIVPDYVLIDGNRCPK-LQMPSLAVVKGDSRVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M +P+YGF H GYPTA H + + G + HR +F P+ Sbjct: 132 EISAASILAKVTRDREMTELDLLFPEYGFAQHKGYPTAFHLEKLAALGATVHHRRSFGPV 191 Query: 205 RNL 207 + + Sbjct: 192 KRV 194 >gi|229006113|ref|ZP_04163801.1| Ribonuclease HII [Bacillus mycoides Rock1-4] gi|228755189|gb|EEM04546.1| Ribonuclease HII [Bacillus mycoides Rock1-4] Length = 257 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 94/194 (48%), Positives = 128/194 (65%), Gaps = 3/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y++ Sbjct: 63 EKALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYDE 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI I + S Q ID+ NI++AT A+ A+ NL P LID +P +P Sbjct: 123 IKEQAIAIGVGIVSPQVIDEINIYQATKRAMLDAIANLACTPEHLLIDAMKLPTPIP--Q 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ S+SI+AASIIAKVTRDR+M+ K+YP YGF+ H+GY T +H Q I+ G Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGKEYPAYGFEQHMGYGTKQHLQAIEMYGV 240 Query: 194 SCIHRLTFRPLRNL 207 HR TF P++++ Sbjct: 241 LEEHRKTFAPIKDM 254 >gi|312866631|ref|ZP_07726846.1| ribonuclease HII [Streptococcus parasanguinis F0405] gi|311097930|gb|EFQ56159.1| ribonuclease HII [Streptococcus parasanguinis F0405] Length = 255 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 91/198 (45%), Positives = 126/198 (63%), Gaps = 7/198 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREE 70 +E E R M +AG+DEVGRG LAGPVV AA+IL IP G+NDSKKI K +E Sbjct: 60 YEKECYAR--GMELIAGVDEVGRGPLAGPVVAAAVILPKACKIP-GLNDSKKIPKSKHKE 116 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 +YE + +AI I I + ID+ NI++AT A+ A+ L P+ LID + DL Sbjct: 117 IYEAVLQNAIAIGIGIKDNHVIDQVNIYEATKLAMMEAIGQLDPQPQHLLIDAMKL--DL 174 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P ++IKGD+ SLSIAAASI+AKVTRD++M ++YP Y F + GY TAKH ++ Sbjct: 175 PISQTSIIKGDANSLSIAAASIVAKVTRDQMMEEFDREYPGYDFAQNAGYGTAKHLDGLE 234 Query: 190 EKGPSCIHRLTFRPLRNL 207 + G + IHR +F P++++ Sbjct: 235 QLGVTPIHRRSFEPVKSM 252 >gi|307703411|ref|ZP_07640353.1| ribonuclease HII family protein [Streptococcus oralis ATCC 35037] gi|307622818|gb|EFO01813.1| ribonuclease HII family protein [Streptococcus oralis ATCC 35037] Length = 203 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 87/194 (44%), Positives = 123/194 (63%), Gaps = 3/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + ++ + +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI KK E+Y Sbjct: 5 EKELYKQGLTLIAGVDEVGRGPLAGPVVAAAVILPKNCKIRGLNDSKKIPKKKHLEIYHA 64 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 + A+ I I +Q ID+ NI++AT A+ A+ + P LID + +P Sbjct: 65 VQDQALAIGIGIMDNQVIDQVNIYEATKLAMKEAISQVSPKPEHLLIDAMKLELSIP--Q 122 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 A+IKGD+ SLSIAAASI+AKVTRD LM+ ++YP Y F ++ GY TAKH + +++ G Sbjct: 123 TAIIKGDANSLSIAAASIVAKVTRDELMKEYDQQYPGYDFTANAGYGTAKHLEGLEKLGV 182 Query: 194 SCIHRLTFRPLRNL 207 + IHR +F P++ L Sbjct: 183 TPIHRTSFEPVKTL 196 >gi|148989186|ref|ZP_01820576.1| ribonuclease HII [Streptococcus pneumoniae SP6-BS73] gi|147925409|gb|EDK76487.1| ribonuclease HII [Streptococcus pneumoniae SP6-BS73] Length = 259 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 89/204 (43%), Positives = 128/204 (62%), Gaps = 9/204 (4%) Query: 11 HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 + LE+M+ EK ++ + GIDEVGRG LAGPVV AA+IL N +NDSKKI Sbjct: 51 NLRLESMLSYEKELYKQGLTLIVGIDEVGRGPLAGPVVAAAVILPKNCKIKDLNDSKKIP 110 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KK E+++ + ++ I I +Q ID+ NI++AT A+ A+ L P LID Sbjct: 111 KKKHLEIFQAVQDQSLSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAM 170 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + DLP ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAK Sbjct: 171 KL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAK 228 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H + + + G + IHR +F P+++L Sbjct: 229 HLEGLTKLGVTPIHRTSFEPVKSL 252 >gi|301063461|ref|ZP_07203993.1| ribonuclease HII [delta proteobacterium NaphS2] gi|300442400|gb|EFK06633.1| ribonuclease HII [delta proteobacterium NaphS2] Length = 215 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 88/210 (41%), Positives = 127/210 (60%), Gaps = 8/210 (3%) Query: 1 MFCNSIPERPH--FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GI 57 +F N + + P F E R +AG+DE GRG LAGPVV AA+++ P+ + F GI Sbjct: 9 LFPNDLSQCPQDPFYHETQARNSGYRLIAGVDEAGRGPLAGPVVAAAVMI-PDGVRFSGI 67 Query: 58 NDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116 DSKK++ + R E + +I A+ I S YI++ NI A+L+A+ AV+ L P Sbjct: 68 KDSKKMTVRARIEAFHRIEGGALTFGIGVVSVSYIEEFNILNASLEAMLRAVQVLDPQPE 127 Query: 117 SALIDG-RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 L+DG ++P + + KGD +S SI+AAS++AKV RDR+M H YP+YGFD Sbjct: 128 MILVDGIHTVPTSIKQKCLK--KGDQVSRSISAASVLAKVYRDRIMAAYHHMYPEYGFDK 185 Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 + GY T +H + IKE GP +HRLTF+ +R Sbjct: 186 NKGYGTRQHLEAIKEHGPCPVHRLTFKGVR 215 >gi|24111618|ref|NP_706128.1| ribonuclease HII [Shigella flexneri 2a str. 301] gi|30061740|ref|NP_835911.1| ribonuclease HII [Shigella flexneri 2a str. 2457T] gi|82775573|ref|YP_401920.1| ribonuclease HII [Shigella dysenteriae Sd197] gi|110804235|ref|YP_687755.1| ribonuclease HII [Shigella flexneri 5 str. 8401] gi|309787143|ref|ZP_07681755.1| ribonuclease HII family protein [Shigella dysenteriae 1617] gi|39932374|sp|Q83MN1|RNH2_SHIFL RecName: Full=Ribonuclease HII; Short=RNase HII gi|97189271|sp|Q32JS6|RNH2_SHIDS RecName: Full=Ribonuclease HII; Short=RNase HII gi|123147263|sp|Q0T826|RNH2_SHIF8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|24050387|gb|AAN41835.1| RNAse HII [Shigella flexneri 2a str. 301] gi|30039982|gb|AAP15716.1| RNAse HII [Shigella flexneri 2a str. 2457T] gi|81239721|gb|ABB60431.1| RNAse HII [Shigella dysenteriae Sd197] gi|110613783|gb|ABF02450.1| RNAse HII [Shigella flexneri 5 str. 8401] gi|281599538|gb|ADA72522.1| Ribonuclease HII [Shigella flexneri 2002017] gi|308924721|gb|EFP70216.1| ribonuclease HII family protein [Shigella dysenteriae 1617] gi|313646756|gb|EFS11215.1| ribonuclease HII family protein [Shigella flexneri 2a str. 2457T] gi|332762020|gb|EGJ92291.1| ribonuclease HII family protein [Shigella flexneri 2747-71] gi|332762187|gb|EGJ92456.1| ribonuclease HII family protein [Shigella flexneri 4343-70] gi|332765032|gb|EGJ95260.1| ribonuclease HII family protein [Shigella flexneri K-671] gi|332768686|gb|EGJ98866.1| ribonuclease HII family protein [Shigella flexneri 2930-71] gi|333009387|gb|EGK28843.1| ribonuclease HII family protein [Shigella flexneri K-218] gi|333010678|gb|EGK30111.1| ribonuclease HII family protein [Shigella flexneri VA-6] gi|333022198|gb|EGK41437.1| ribonuclease HII family protein [Shigella flexneri K-304] Length = 198 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 89/182 (48%), Positives = 112/182 (61%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LYE+I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEEIKEKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P+ LP A AV+KGDS Sbjct: 72 RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMAVVKGDSRVP 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|42519032|ref|NP_964962.1| ribonuclease HII [Lactobacillus johnsonii NCC 533] gi|73917610|sp|Q74JK1|RNH2_LACJO RecName: Full=Ribonuclease HII; Short=RNase HII gi|41583319|gb|AAS08928.1| ribonuclease HII [Lactobacillus johnsonii NCC 533] Length = 250 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 86/190 (45%), Positives = 124/190 (65%), Gaps = 7/190 (3%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 EK W VAG+DEVGRG LAGPVV AA+IL + +NDSKK+S KKR+ L+ KI Sbjct: 58 EKEFWQKDQLVAGVDEVGRGPLAGPVVTAAVILPHDFDLIDVNDSKKLSPKKRQALFPKI 117 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A+ +S+ A++ ID+ NI++A A+ HAV+ L+V P + L+D ++P ++P Sbjct: 118 LEKAVSVSVGLANNDVIDQINIYEADRLAMAHAVQGLKVKPDALLVDAMNVPLNIP--QV 175 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +I GD+ S SIAAASI+AKV RD LM + YP+Y F + GY T +H + +++ GP+ Sbjct: 176 KLIHGDAKSNSIAAASIVAKVFRDNLMDAYGELYPEYDFKHNAGYGTREHMEALEKYGPT 235 Query: 195 CIHRLTFRPL 204 IHR +F P+ Sbjct: 236 PIHRRSFAPV 245 >gi|24379434|ref|NP_721389.1| ribonuclease HII [Streptococcus mutans UA159] gi|39932397|sp|Q8DUE1|RNH2_STRMU RecName: Full=Ribonuclease HII; Short=RNase HII gi|24377368|gb|AAN58695.1|AE014939_2 putative ribonuclease HII [Streptococcus mutans UA159] Length = 260 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 93/204 (45%), Positives = 133/204 (65%), Gaps = 12/204 (5%) Query: 14 LEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LE M+R EK+++ +AGIDEVGRG LAGPVV A +IL N +NDSKKI KK Sbjct: 54 LENMLRYEKDLYLQGYQAIAGIDEVGRGPLAGPVVAACVILPKNCKIRHLNDSKKIPKKK 113 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVI---PRSALIDGR 123 EE+Y+++ A+ I I S + ID+ NI++AT A+ A+++LQ + P LID Sbjct: 114 HEEIYKQVVKVALAIGIGRISSEMIDQVNIYEATKMAMLQAIDDLQGLVSRPDYLLIDAM 173 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 ++ +P + +IKGD+ SLSIAAASI+AKVTRDR+M + YP YGF +VGY T + Sbjct: 174 NLGISIPQSS--IIKGDAHSLSIAAASIVAKVTRDRMMIGYDEIYPGYGFAQNVGYGTKQ 231 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H + ++ G + IHR TF P++++ Sbjct: 232 HLEGLETLGVTPIHRRTFEPIKSM 255 >gi|194014254|ref|ZP_03052871.1| ribonuclease HII (RNase HII) [Bacillus pumilus ATCC 7061] gi|194013280|gb|EDW22845.1| ribonuclease HII (RNase HII) [Bacillus pumilus ATCC 7061] Length = 254 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 85/197 (43%), Positives = 120/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + + +AGIDE GRG LAGPVV AA+IL + + G+NDSK++S KKR Sbjct: 58 LQFENNAKAQGYTCIAGIDEAGRGPLAGPVVAAAVILKEDTVLLGLNDSKQLSEKKRLAY 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ I I ID+ NI++A+ A+ AVE L P LID ++P LP Sbjct: 118 YDLIQKEALDIGIGIVDAATIDEINIYEASRLAMVRAVEQLTHTPDYLLIDAMTLP--LP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S SIAA + IAKVTRD++M +KYP+Y F+ H GY T +H I+ Sbjct: 176 IHQENIIKGDAKSASIAAGACIAKVTRDQMMEEYGRKYPEYQFEKHKGYGTKEHLAAIQT 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHRL+F P++++ Sbjct: 236 HGAAPIHRLSFAPVKSV 252 >gi|309796360|ref|ZP_07690769.1| ribonuclease HII [Escherichia coli MS 145-7] gi|308120064|gb|EFO57326.1| ribonuclease HII [Escherichia coli MS 145-7] Length = 198 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 89/182 (48%), Positives = 112/182 (61%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LYE+I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEEIKEKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P+ LP A AV+KGDS Sbjct: 72 RAEPHEIDELNILHATMLAMQRAVAELHIAPEYVLIDGNRCPK-LPMPAMAVVKGDSRVP 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|16128176|ref|NP_414725.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli str. K-12 substr. MG1655] gi|74310803|ref|YP_309222.1| ribonuclease HII [Shigella sonnei Ss046] gi|89107063|ref|AP_000843.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli str. K-12 substr. W3110] gi|157157454|ref|YP_001461352.1| ribonuclease HII [Escherichia coli E24377A] gi|157159648|ref|YP_001456966.1| ribonuclease HII [Escherichia coli HS] gi|170079819|ref|YP_001729139.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli str. K-12 substr. DH10B] gi|188492814|ref|ZP_03000084.1| ribonuclease HII [Escherichia coli 53638] gi|191167029|ref|ZP_03028851.1| ribonuclease HII [Escherichia coli B7A] gi|193063198|ref|ZP_03044289.1| ribonuclease HII [Escherichia coli E22] gi|193067763|ref|ZP_03048730.1| ribonuclease HII [Escherichia coli E110019] gi|194428257|ref|ZP_03060799.1| ribonuclease HII [Escherichia coli B171] gi|209917373|ref|YP_002291457.1| ribonuclease HII [Escherichia coli SE11] gi|218552764|ref|YP_002385677.1| ribonuclease HII [Escherichia coli IAI1] gi|218693648|ref|YP_002401315.1| ribonuclease HII [Escherichia coli 55989] gi|238899581|ref|YP_002925377.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli BW2952] gi|254037602|ref|ZP_04871679.1| ribonuclease HII [Escherichia sp. 1_1_43] gi|256021615|ref|ZP_05435480.1| ribonuclease HII [Shigella sp. D9] gi|256025495|ref|ZP_05439360.1| ribonuclease HII [Escherichia sp. 4_1_40B] gi|260842415|ref|YP_003220193.1| ribonuclease HII [Escherichia coli O103:H2 str. 12009] gi|260853393|ref|YP_003227284.1| ribonuclease HII [Escherichia coli O26:H11 str. 11368] gi|260866332|ref|YP_003232734.1| ribonuclease HII [Escherichia coli O111:H- str. 11128] gi|293476840|ref|ZP_06665248.1| ribonuclease HII [Escherichia coli B088] gi|300816223|ref|ZP_07096446.1| ribonuclease HII [Escherichia coli MS 107-1] gi|300824094|ref|ZP_07104214.1| ribonuclease HII [Escherichia coli MS 119-7] gi|300923025|ref|ZP_07139092.1| ribonuclease HII [Escherichia coli MS 182-1] gi|300949785|ref|ZP_07163759.1| ribonuclease HII [Escherichia coli MS 116-1] gi|300956066|ref|ZP_07168391.1| ribonuclease HII [Escherichia coli MS 175-1] gi|301028676|ref|ZP_07191897.1| ribonuclease HII [Escherichia coli MS 196-1] gi|301330019|ref|ZP_07222703.1| ribonuclease HII [Escherichia coli MS 78-1] gi|301646506|ref|ZP_07246381.1| ribonuclease HII [Escherichia coli MS 146-1] gi|307136783|ref|ZP_07496139.1| ribonuclease HII [Escherichia coli H736] gi|307311369|ref|ZP_07591011.1| Ribonuclease H [Escherichia coli W] gi|331640637|ref|ZP_08341785.1| ribonuclease HII [Escherichia coli H736] gi|331666424|ref|ZP_08367305.1| ribonuclease HII [Escherichia coli TA271] gi|331680762|ref|ZP_08381421.1| ribonuclease HII [Escherichia coli H591] gi|332282857|ref|ZP_08395270.1| ribonuclease HII degrades RNA of DNA-RNA hybrids [Shigella sp. D9] gi|2507334|sp|P10442|RNH2_ECOLI RecName: Full=Ribonuclease HII; Short=RNase HII gi|97189278|sp|Q3Z5H5|RNH2_SHISS RecName: Full=Ribonuclease HII; Short=RNase HII gi|166991065|sp|A7ZHS3|RNH2_ECO24 RecName: Full=Ribonuclease HII; Short=RNase HII gi|166991066|sp|A7ZWC9|RNH2_ECOHS RecName: Full=Ribonuclease HII; Short=RNase HII gi|226736819|sp|B7M1Y6|RNH2_ECO8A RecName: Full=Ribonuclease HII; Short=RNase HII gi|229564284|sp|B1XD52|RNH2_ECODH RecName: Full=Ribonuclease HII; Short=RNase HII gi|238056777|sp|B6HZF7|RNH2_ECOSE RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807975|sp|B7LGP5|RNH2_ECO55 RecName: Full=Ribonuclease HII; Short=RNase HII gi|259494063|sp|C4ZRS5|RNH2_ECOBW RecName: Full=Ribonuclease HII; Short=RNase HII gi|1552760|gb|AAB08612.1| ribonuclease HII [Escherichia coli] gi|1786380|gb|AAC73294.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli str. K-12 substr. MG1655] gi|73854280|gb|AAZ86987.1| RNAse HII [Shigella sonnei Ss046] gi|85674372|dbj|BAA77858.2| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli str. K12 substr. W3110] gi|157065328|gb|ABV04583.1| ribonuclease HII [Escherichia coli HS] gi|157079484|gb|ABV19192.1| ribonuclease HII [Escherichia coli E24377A] gi|169887654|gb|ACB01361.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli str. K-12 substr. DH10B] gi|188488013|gb|EDU63116.1| ribonuclease HII [Escherichia coli 53638] gi|190902922|gb|EDV62649.1| ribonuclease HII [Escherichia coli B7A] gi|192931106|gb|EDV83709.1| ribonuclease HII [Escherichia coli E22] gi|192959175|gb|EDV89611.1| ribonuclease HII [Escherichia coli E110019] gi|194413632|gb|EDX29912.1| ribonuclease HII [Escherichia coli B171] gi|209910632|dbj|BAG75706.1| ribonuclease HII [Escherichia coli SE11] gi|218350380|emb|CAU96063.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli 55989] gi|218359532|emb|CAQ97070.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli IAI1] gi|226840708|gb|EEH72710.1| ribonuclease HII [Escherichia sp. 1_1_43] gi|238863470|gb|ACR65468.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli BW2952] gi|257752042|dbj|BAI23544.1| ribonuclease HII [Escherichia coli O26:H11 str. 11368] gi|257757562|dbj|BAI29059.1| ribonuclease HII [Escherichia coli O103:H2 str. 12009] gi|257762688|dbj|BAI34183.1| ribonuclease HII [Escherichia coli O111:H- str. 11128] gi|260450614|gb|ACX41036.1| Ribonuclease H [Escherichia coli DH1] gi|291321293|gb|EFE60735.1| ribonuclease HII [Escherichia coli B088] gi|299878308|gb|EFI86519.1| ribonuclease HII [Escherichia coli MS 196-1] gi|300317096|gb|EFJ66880.1| ribonuclease HII [Escherichia coli MS 175-1] gi|300420652|gb|EFK03963.1| ribonuclease HII [Escherichia coli MS 182-1] gi|300450817|gb|EFK14437.1| ribonuclease HII [Escherichia coli MS 116-1] gi|300523371|gb|EFK44440.1| ribonuclease HII [Escherichia coli MS 119-7] gi|300531430|gb|EFK52492.1| ribonuclease HII [Escherichia coli MS 107-1] gi|300843930|gb|EFK71690.1| ribonuclease HII [Escherichia coli MS 78-1] gi|301075292|gb|EFK90098.1| ribonuclease HII [Escherichia coli MS 146-1] gi|306908348|gb|EFN38846.1| Ribonuclease H [Escherichia coli W] gi|315059401|gb|ADT73728.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli W] gi|315134873|dbj|BAJ42032.1| ribonuclease HII [Escherichia coli DH1] gi|315616332|gb|EFU96950.1| ribonuclease HII family protein [Escherichia coli 3431] gi|320200291|gb|EFW74877.1| Ribonuclease HII [Escherichia coli EC4100B] gi|323157980|gb|EFZ44082.1| ribonuclease HII family protein [Escherichia coli EPECa14] gi|323160197|gb|EFZ46156.1| ribonuclease HII family protein [Escherichia coli E128010] gi|323165884|gb|EFZ51666.1| ribonuclease HII family protein [Shigella sonnei 53G] gi|323170975|gb|EFZ56624.1| ribonuclease HII family protein [Escherichia coli LT-68] gi|323176498|gb|EFZ62090.1| ribonuclease HII family protein [Escherichia coli 1180] gi|323181691|gb|EFZ67105.1| ribonuclease HII family protein [Escherichia coli 1357] gi|323380040|gb|ADX52308.1| Ribonuclease H [Escherichia coli KO11] gi|323939941|gb|EGB36139.1| ribonuclease HII [Escherichia coli E482] gi|323945660|gb|EGB41709.1| ribonuclease HII [Escherichia coli H120] gi|323970662|gb|EGB65918.1| ribonuclease HII [Escherichia coli TA007] gi|324017810|gb|EGB87029.1| ribonuclease HII [Escherichia coli MS 117-3] gi|324118303|gb|EGC12198.1| ribonuclease HII [Escherichia coli E1167] gi|331040383|gb|EGI12590.1| ribonuclease HII [Escherichia coli H736] gi|331066635|gb|EGI38512.1| ribonuclease HII [Escherichia coli TA271] gi|331072225|gb|EGI43561.1| ribonuclease HII [Escherichia coli H591] gi|332105209|gb|EGJ08555.1| ribonuclease HII degrades RNA of DNA-RNA hybrids [Shigella sp. D9] gi|332341516|gb|AEE54850.1| ribonuclease HII RnhB [Escherichia coli UMNK88] Length = 198 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 89/182 (48%), Positives = 112/182 (61%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LYE+I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEEIKEKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P+ LP A AV+KGDS Sbjct: 72 RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMAVVKGDSRVP 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|290512456|ref|ZP_06551822.1| ribonuclease HII [Klebsiella sp. 1_1_55] gi|289774797|gb|EFD82799.1| ribonuclease HII [Klebsiella sp. 1_1_55] Length = 198 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 87/181 (48%), Positives = 112/181 (61%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L ++I A+ S+ Sbjct: 11 VAGVDEVGRGPLVGAVVTAAVILDPAKPIVGLNDSKKLSEKRRLALCDEIKEKALCWSLG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L ++P LIDG P LP + AV+KGDS Sbjct: 71 RAEPHEIDELNILHATMLAMQRAVAGLSIVPEFVLIDGNRCP-SLPMPSLAVVKGDSRVA 129 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H Q ++E G + HR +F P+ Sbjct: 130 EISAASILAKVTRDAEMATLDLAFPHYGFAQHKGYPTAVHLQKLQEHGATEHHRRSFGPV 189 Query: 205 R 205 + Sbjct: 190 K 190 >gi|290580555|ref|YP_003484947.1| putative ribonuclease HII [Streptococcus mutans NN2025] gi|254997454|dbj|BAH88055.1| putative ribonuclease HII [Streptococcus mutans NN2025] Length = 260 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 93/204 (45%), Positives = 133/204 (65%), Gaps = 12/204 (5%) Query: 14 LEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LE M+R EK+++ +AGIDEVGRG LAGPVV A +IL N +NDSKKI KK Sbjct: 54 LENMLRYEKDLYLQGYQAIAGIDEVGRGPLAGPVVAACVILPKNCKIRHLNDSKKIPKKK 113 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVI---PRSALIDGR 123 EE+Y+++ A+ I I S + ID+ NI++AT A+ A+++LQ + P LID Sbjct: 114 HEEIYKQVVKVALAIGIGRISSEMIDQVNIYEATKMAMLQAIDDLQGLVSRPDYLLIDAM 173 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 ++ +P + +IKGD+ SLSIAAASI+AKVTRDR+M + YP YGF +VGY T + Sbjct: 174 NLGISIPQSS--IIKGDAHSLSIAAASIVAKVTRDRMMIGYDEIYPGYGFAQNVGYGTKQ 231 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H + ++ G + IHR TF P++++ Sbjct: 232 HLEGLETLGVTPIHRRTFEPIKSM 255 >gi|260887868|ref|ZP_05899131.1| ribonuclease HII [Selenomonas sputigena ATCC 35185] gi|330838733|ref|YP_004413313.1| Ribonuclease H [Selenomonas sputigena ATCC 35185] gi|260862374|gb|EEX76874.1| ribonuclease HII [Selenomonas sputigena ATCC 35185] gi|329746497|gb|AEB99853.1| Ribonuclease H [Selenomonas sputigena ATCC 35185] Length = 255 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 91/198 (45%), Positives = 130/198 (65%), Gaps = 3/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + REK VAG+DE GRG LAGPVVVAA+IL +NDSKK+S RE+L Sbjct: 57 YHYEFLAREKGCTLVAGVDEAGRGPLAGPVVVAAVILPLGFFLPHLNDSKKLSAAMREKL 116 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + IT A+ + I S S + ID+ NI++AT + V +L+ P+ L+D ++P LP Sbjct: 117 FSAITEGAVAVEIVSISEKIIDEKNIYQATKQGMCEVVASLRPQPQHVLLD--AVPLKLP 174 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +F+++ GD+ S SIAAASI+AKVTRDRLM ++YP YGF H GY TA+H + +++ Sbjct: 175 MTSFSIVHGDAKSASIAAASIMAKVTRDRLMLKYDEEYPQYGFKKHKGYGTAEHLEALQK 234 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP IHR +F P+R+++ Sbjct: 235 YGPCPIHRRSFEPIRSMA 252 >gi|206579509|ref|YP_002240329.1| ribonuclease HII [Klebsiella pneumoniae 342] gi|288937035|ref|YP_003441094.1| ribonuclease H [Klebsiella variicola At-22] gi|238056780|sp|B5Y1I8|RNH2_KLEP3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|206568567|gb|ACI10343.1| ribonuclease HII [Klebsiella pneumoniae 342] gi|288891744|gb|ADC60062.1| Ribonuclease H [Klebsiella variicola At-22] Length = 199 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 87/181 (48%), Positives = 112/181 (61%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L ++I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPAKPIVGLNDSKKLSEKRRLALCDEIKEKALCWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L ++P LIDG P LP + AV+KGDS Sbjct: 72 RAEPHEIDELNILHATMLAMQRAVAGLSIVPEFVLIDGNRCP-SLPMPSLAVVKGDSRVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H Q ++E G + HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMATLDLAFPHYGFAQHKGYPTAVHLQKLQEHGATEHHRRSFGPV 190 Query: 205 R 205 + Sbjct: 191 K 191 >gi|114567000|ref|YP_754154.1| ribonuclease H [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318000|sp|Q0AWX1|RNH2_SYNWW RecName: Full=Ribonuclease HII; Short=RNase HII gi|114337935|gb|ABI68783.1| RNase HII [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 255 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 84/183 (45%), Positives = 118/183 (64%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AGIDE GRG +AGPV+ AA+IL + GINDSKK++ KR +L +I AI S++ Sbjct: 60 IAGIDEAGRGPIAGPVMAAAVILSRDFFCPGINDSKKLTALKRSKLAAEIKKQAISWSVA 119 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + Y+DK NI AT +A+ AV+NL P LID +P D+ + + +IKGDS+S+ Sbjct: 120 AVFPSYLDKVNILNATREAMLLAVKNLSPRPEFLLIDAVQLP-DIDIKQYPLIKGDSLSV 178 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASI+AKV RDR+M YP YGF H GY T +H Q + G +HR++F P+ Sbjct: 179 SIAAASILAKVERDRVMEAFDSLYPGYGFSRHKGYATREHLQSLLRLGTCALHRVSFEPV 238 Query: 205 RNL 207 +++ Sbjct: 239 KSM 241 >gi|271499509|ref|YP_003332534.1| Ribonuclease H [Dickeya dadantii Ech586] gi|270343064|gb|ACZ75829.1| Ribonuclease H [Dickeya dadantii Ech586] Length = 198 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 85/182 (46%), Positives = 114/182 (62%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP+ G+ DSK +S K+R LY++I A+ S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLADSKTLSEKRRLALYDEIREKALAWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID NI AT+ A+ AV L V P LIDG P LP + AV+KGDS Sbjct: 73 RAEPEEIDTLNILHATMLAMQRAVAALPVTPDFVLIDGNRCPA-LPMPSQAVVKGDSRVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M + +++P+YGF H GYPTA H + + G + HR +F P+ Sbjct: 132 EISAASILAKVTRDREMEVLDQQFPEYGFAQHKGYPTAYHLEKLATLGATLHHRRSFAPV 191 Query: 205 RN 206 + Sbjct: 192 KR 193 >gi|110834018|ref|YP_692877.1| ribonuclease H [Alcanivorax borkumensis SK2] gi|123149533|sp|Q0VQE3|RNH2_ALCBS RecName: Full=Ribonuclease HII; Short=RNase HII gi|110647129|emb|CAL16605.1| ribonuclease H [Alcanivorax borkumensis SK2] Length = 220 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 89/180 (49%), Positives = 111/180 (61%), Gaps = 2/180 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+ DSKKIS KKR L +I S A+ ++ Sbjct: 32 VAGVDEVGRGPLVGAVVTAAVILDPKYPIVGLADSKKISEKKRLALESEIKSHALGWALG 91 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L V + LIDG +P L C A AV+KGD Sbjct: 92 RAESDEIDQLNILHATMLAMQRAVAALPVEAHAVLIDGNRVPA-LQCPAQAVVKGDGRVP 150 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKV RDR M H +YP YGFD H GYPTA H +++ G HR +F P+ Sbjct: 151 AISAASILAKVARDREMYALHARYPQYGFDRHKGYPTAVHMAALEQHGALAEHRRSFGPV 210 >gi|15604075|ref|NP_220590.1| ribonuclease HII [Rickettsia prowazekii str. Madrid E] gi|7227932|sp|Q9ZDW3|RNH2_RICPR RecName: Full=Ribonuclease HII; Short=RNase HII gi|3860766|emb|CAA14667.1| RIBONUCLEASE HII (rnhB) [Rickettsia prowazekii] gi|292571798|gb|ADE29713.1| Ribonuclease HII [Rickettsia prowazekii Rp22] Length = 193 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 86/179 (48%), Positives = 117/179 (65%), Gaps = 2/179 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + VAG+DE GRG+L GPVV +A+I+D +I GI DSKK+S KRE LYE+ITS+ + S Sbjct: 15 YIVAGVDEAGRGSLVGPVVASAVIIDKADIIPGIKDSKKLSKNKREILYERITSNYVWST 74 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + +H ID NI +AT A AV NL + P+ L+DG D+ + ++I GD++S Sbjct: 75 AIIAHTEIDNINILEATKKACAIAVANLSLKPQKILVDGNMKFSDI--RFISIINGDNLS 132 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 LSIAAASIIAKVTRDRLM ++P Y + + GY T +H + IK G S HR +F+ Sbjct: 133 LSIAAASIIAKVTRDRLMLELSAEFPQYLWHKNYGYGTREHIEAIKTHGLSSYHRRSFK 191 >gi|91788543|ref|YP_549495.1| ribonuclease HII [Polaromonas sp. JS666] gi|123164802|sp|Q12A45|RNH2_POLSJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|91697768|gb|ABE44597.1| RNase HII [Polaromonas sp. JS666] Length = 199 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 85/180 (47%), Positives = 120/180 (66%), Gaps = 2/180 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DE GRG L GPVV AA+ILD N G+ DSKK++ ++RE LY++I + A+ SI+ Sbjct: 16 LAGVDEAGRGPLMGPVVAAAVILDELNPIKGLADSKKLTPQRREALYDEIRAKALCCSIA 75 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A+ + ID+ NI +AT+ A+ AVE+L++ P L+DG +P L + AVI GD+I Sbjct: 76 LATAEEIDRLNILQATMLAMRRAVESLRLKPNKVLVDGNRLP-TLAIVSEAVIGGDAIVP 134 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKV RDR H +YP YGF SH GY TA+H ++E G HR +F P+ Sbjct: 135 AISAASILAKVYRDRWCAEFHLEYPQYGFASHKGYSTAEHLAALREHGACPQHRRSFAPV 194 >gi|330719081|ref|ZP_08313681.1| ribonuclease HII [Leuconostoc fallax KCTC 3537] Length = 254 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 90/200 (45%), Positives = 122/200 (61%), Gaps = 3/200 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F++E K + VAGIDEVGRG LAGPVV AA+IL + + DSK++S KR Sbjct: 56 QKRFDIEKQYWAKGLVNVAGIDEVGRGPLAGPVVSAAVILPHDFNQVDVIDSKQLSADKR 115 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + LY+ I + A+ I I + ID NI++A A+ AV+ L + LID + Sbjct: 116 DRLYDVIMAEALAIGIGQVDAETIDAINIYQAARLAMTQAVQQLSIPVDGLLIDAMQLDL 175 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 DLP ++ IKGD+ S SI AASIIAKVTRDRLM K+YP YGF + GY T +H Sbjct: 176 DLPQESL--IKGDARSNSIGAASIIAKVTRDRLMAEYGKRYPAYGFQHNAGYGTKEHLVA 233 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 I+E G + +HR TF P++N+ Sbjct: 234 IEEYGITPLHRKTFAPIKNM 253 >gi|300724780|ref|YP_003714105.1| RNAse HII [Xenorhabdus nematophila ATCC 19061] gi|297631322|emb|CBJ92017.1| RNAse HII [Xenorhabdus nematophila ATCC 19061] Length = 196 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 86/182 (47%), Positives = 115/182 (63%), Gaps = 4/182 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSKK++ K+RE LY +I A+ S+ Sbjct: 11 IAGVDEVGRGPLVGDVVTAAVILDPAKPITGLMDSKKLTEKRREALYLEIKEKALCWSLG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L ++P LIDG P +P QA V+KGDS+ Sbjct: 71 RAEPEEIDQLNILHATMLAMQRAVAGLVIVPDYVLIDGNRCPALAMPSQA--VVKGDSLV 128 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M ++PDYGF H GYPTA H + + G + HR +F P Sbjct: 129 AEISAASILAKVTRDREMAELDNQFPDYGFAKHKGYPTALHLEKLALHGATAHHRKSFAP 188 Query: 204 LR 205 ++ Sbjct: 189 VK 190 >gi|86605527|ref|YP_474290.1| ribonuclease HII [Synechococcus sp. JA-3-3Ab] gi|97189384|sp|Q2JW45|RNH2_SYNJA RecName: Full=Ribonuclease HII; Short=RNase HII gi|86554069|gb|ABC99027.1| ribonuclease HII [Synechococcus sp. JA-3-3Ab] Length = 221 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 89/204 (43%), Positives = 128/204 (62%), Gaps = 8/204 (3%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKIS 64 +P + E + ++ M VAG+DEVGRGALAGPVV AA+IL DP + G+ D K++ Sbjct: 14 QPSLKWEGSLWQQGMRRVAGVDEVGRGALAGPVVAAAVILPAHLDPEALS-GVRDCKQLR 72 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +R E+I A+ + I SAS ID+ NI +ATL A+ A+ + + L+DG Sbjct: 73 PPQRAHWAERIAQVALAVGIGSASAAEIDQLNIRQATLLAMQRALAQVGEV-EHILLDGL 131 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + E L + A++KGD +SLSIAAASI+AKV RD LM+ +YP YG+ ++VGY T + Sbjct: 132 PLAE-LGSRQTALVKGDQLSLSIAAASIVAKVWRDTLMQSWDHQYPGYGWRTNVGYGTQE 190 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H+ ++ GPS HR +F PLR+L Sbjct: 191 HRLALQRLGPSPQHRRSFAPLRDL 214 >gi|291524515|emb|CBK90102.1| Ribonuclease HII [Eubacterium rectale DSM 17629] Length = 253 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 86/177 (48%), Positives = 117/177 (66%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG LAGPVV A+IL + INDSKK++ KR+ELY+ I A+ + I Sbjct: 73 ICGIDEVGRGPLAGPVVACAVILPKDCDILYINDSKKLTAAKRDELYDVIMEKAVSVGIG 132 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 ASH+ ID+ NI +AT +A+ A+ L +P L D +IP + + +IKGD+ S+ Sbjct: 133 MASHERIDEINILQATYEAMRQAIGKLDPVPDLTLNDAVTIP-GVDIKQVPIIKGDAKSI 191 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SI AASI+AKVTRDR+M + YP YGF S+ GY +A+H + +KE GPS IHR +F Sbjct: 192 SIGAASIVAKVTRDRMMVEYDRIYPGYGFASNKGYGSAEHIKALKEIGPSPIHRASF 248 >gi|188533051|ref|YP_001906848.1| Ribonuclease HII [Erwinia tasmaniensis Et1/99] gi|238691983|sp|B2VHY0|RNH2_ERWT9 RecName: Full=Ribonuclease HII; Short=RNase HII gi|188028093|emb|CAO95950.1| Ribonuclease HII [Erwinia tasmaniensis Et1/99] Length = 207 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILDP+ G+ DSKK+S K+R LY++I A+ S+ Sbjct: 12 IAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLGDSKKLSEKRRLALYDEIKDKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L + P LIDG P L + AV+KGDS+ Sbjct: 72 RAEPEEIDQLNILHATMLAMQRAVAGLHLSPDFVLIDGNRCPA-LAMPSRAVVKGDSLVP 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M +YP YGF H GYPTA H + + + G + HR +F P+ Sbjct: 131 EISAASILAKVTRDREMCELDLQYPQYGFARHKGYPTAVHVEKLAQFGATPQHRRSFAPV 190 Query: 205 RN 206 RN Sbjct: 191 RN 192 >gi|222054591|ref|YP_002536953.1| Ribonuclease H [Geobacter sp. FRC-32] gi|254807978|sp|B9M597|RNH2_GEOSF RecName: Full=Ribonuclease HII; Short=RNase HII gi|221563880|gb|ACM19852.1| Ribonuclease H [Geobacter sp. FRC-32] Length = 216 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/203 (44%), Positives = 127/203 (62%), Gaps = 7/203 (3%) Query: 8 ERPHF-ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISH 65 E+P E ++MVR + +AG+DE GRG LAGPVV AA+IL P I ++DSKK++ Sbjct: 10 EKPTLLEFDSMVRCQGYASLAGVDEAGRGPLAGPVVAAAVIL-PAGIGLSEVDDSKKLTS 68 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KR+EL+E I ++A+ + + + ID+ NI +ATL A+ A+ L + P L+DG S Sbjct: 69 GKRDELFEVIMANALAVGVGLSDAGVIDRINILQATLAAMKEALSLLFIKPDYVLVDGIS 128 Query: 125 -IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 IP +P + + KGD SLSIAAASI+AKV RDRLM ++P YGF +H GY Sbjct: 129 KIPVTIPQKT--IKKGDGTSLSIAAASIVAKVHRDRLMVSYDAEFPQYGFAAHKGYGCVD 186 Query: 184 HQQVIKEKGPSCIHRLTFRPLRN 206 H + I E GP IHR+TF ++ Sbjct: 187 HLKAIAEYGPCPIHRMTFSGVKE 209 >gi|325290406|ref|YP_004266587.1| RNase HII [Syntrophobotulus glycolicus DSM 8271] gi|324965807|gb|ADY56586.1| RNase HII [Syntrophobotulus glycolicus DSM 8271] Length = 227 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 85/194 (43%), Positives = 126/194 (64%), Gaps = 5/194 (2%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKI 75 +V+E M+ VAG+DE GRG LAGPV+ AA IL + ++P+ +NDSKK++ ++RE+L+E+I Sbjct: 29 LVKEGFMF-VAGVDEAGRGPLAGPVIAAACILPESFDLPY-LNDSKKLTARRREDLFERI 86 Query: 76 TSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A +++ + ID+ NI A+ A+ A+E L + P L+DGR D+ C+ Sbjct: 87 KDQASAYAVAGVEAEEIDRMNILHASKLAMKKAIEALHIPPGYVLVDGRD-EIDIVCRQK 145 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 AVI GD+ IAA SI+AKVTRDR+M H YP Y FD H GY T H +++++ GP Sbjct: 146 AVIGGDAKCACIAAGSILAKVTRDRIMDDLHMLYPQYAFDKHKGYGTRLHFELLQKYGPC 205 Query: 195 CIHRLTFRPLRNLS 208 IHR +F P++ L+ Sbjct: 206 PIHRYSFAPVKALA 219 >gi|167758983|ref|ZP_02431110.1| hypothetical protein CLOSCI_01329 [Clostridium scindens ATCC 35704] gi|167663390|gb|EDS07520.1| hypothetical protein CLOSCI_01329 [Clostridium scindens ATCC 35704] Length = 219 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 89/177 (50%), Positives = 114/177 (64%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84 + GIDEVGRG LAGPVV A+IL + +NDSKK+S KKRE LYE+I A+ + I Sbjct: 39 ICGIDEVGRGPLAGPVVAGAVILPKDGSILYLNDSKKLSEKKREALYEEIMERAVATGIG 98 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 ID+ NI +AT +A+ A+ NL+V P L D +IP+ + + +IKGD+ S+ Sbjct: 99 IVGSARIDEINILQATYEAMRMAISNLKVEPDLLLNDAVTIPQ-VSIRQVPIIKGDAKSV 157 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASIIAKVTRDRLM + P YGF S+ GY T H ++E GPS IHR TF Sbjct: 158 SIAAASIIAKVTRDRLMVEYDQVLPGYGFASNKGYGTKAHIAGLRELGPSPIHRATF 214 >gi|253687351|ref|YP_003016541.1| Ribonuclease H [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259494070|sp|C6DAJ7|RNH2_PECCP RecName: Full=Ribonuclease HII; Short=RNase HII gi|251753929|gb|ACT12005.1| Ribonuclease H [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 198 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 85/182 (46%), Positives = 114/182 (62%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSK++S K+R LY++I A+ S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPTRPIVGLADSKQLSEKRRLALYDEIKEKALAWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L V+P LIDG P LP + AV+KGDS Sbjct: 73 RAEPEEIDQLNILHATMLAMQRAVAGLAVVPDFVLIDGNRCPA-LPMPSQAVVKGDSRVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M +++P YGF H GYPTA H + + G + HR +F P+ Sbjct: 132 EISAASIMAKVTRDREMVELDERFPAYGFAQHKGYPTAFHLEKLAALGATEFHRRSFAPV 191 Query: 205 RN 206 + Sbjct: 192 KR 193 >gi|189499018|ref|YP_001958488.1| ribonuclease HII [Chlorobium phaeobacteroides BS1] gi|189494459|gb|ACE03007.1| Ribonuclease H [Chlorobium phaeobacteroides BS1] Length = 207 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 87/192 (45%), Positives = 109/192 (56%), Gaps = 9/192 (4%) Query: 20 EKNMW----PVAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREEL 71 E+ W V GIDE GRG LAGPVV AA++ P + G+NDSK + K+R L Sbjct: 9 EEKFWHEHTCVCGIDEAGRGPLAGPVVAAAVMFPRYFKPEGVLTGLNDSKTLRPKQRSAL 68 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 E I S+A SIS H ID NI AT+ A+ A E L+ +P LIDG LP Sbjct: 69 AEAIQSAAECFSISIIDHTTIDSVNIFNATMLAMNAAAEKLEQLPGLLLIDGNRFVPSLP 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++KGD+ +SIAAASI+AK RDR+M H++YP+YGF H GYPT H I Sbjct: 129 IPYLTIVKGDTKVVSIAAASILAKTCRDRIMNEYHREYPEYGFAQHFGYPTQAHIAAIAR 188 Query: 191 KGPSCIHRLTFR 202 G IHR +FR Sbjct: 189 YGRCPIHRTSFR 200 >gi|323464643|gb|ADX76796.1| ribonuclease HII [Staphylococcus pseudintermedius ED99] Length = 261 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 85/183 (46%), Positives = 117/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 + G+DEVGRG LAGPVV +A+IL P + GINDSK++S +R L + ++ Sbjct: 76 ICGVDEVGRGPLAGPVVASAVILQPGHDFVGINDSKQLSVTQRNLLNTSLKEQVRAWAVG 135 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A+ + ID+HNI+ AT A+Y A+ENL V P LID ++ + L A+IKGD+ S+ Sbjct: 136 VATPEEIDEHNIYVATQIAMYRAIENLSVTPTHYLIDAMTL-DHLTAPQQAIIKGDAKSV 194 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASIIAKV RD LM K+YP Y F + GY T KH +K+ G + IHR TF P+ Sbjct: 195 SIAAASIIAKVYRDDLMAEYAKQYPGYDFAQNAGYGTQKHLDGLKQYGVTTIHRKTFEPI 254 Query: 205 RNL 207 +++ Sbjct: 255 KSM 257 >gi|283783967|ref|YP_003363832.1| ribonuclease HII [Citrobacter rodentium ICC168] gi|282947421|emb|CBG86966.1| ribonuclease HII [Citrobacter rodentium ICC168] Length = 198 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 110/182 (60%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LY++I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALYQEIKEKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A IDK NI AT+ A+ AV L + P LIDG P LP + AV+KGDS Sbjct: 72 RAEPHEIDKLNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPA-LPVPSMAVVKGDSRVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H + + G + HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMAALDSVFPQYGFAQHKGYPTAFHLEALAAHGATEHHRRSFGPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|319892260|ref|YP_004149135.1| Ribonuclease HII [Staphylococcus pseudintermedius HKU10-03] gi|317161956|gb|ADV05499.1| Ribonuclease HII [Staphylococcus pseudintermedius HKU10-03] Length = 261 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 85/183 (46%), Positives = 117/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 + G+DEVGRG LAGPVV +A+IL P + GINDSK++S +R L + ++ Sbjct: 76 ICGVDEVGRGPLAGPVVASAVILQPGHDFVGINDSKQLSVTQRNLLNTSLKEQVRAWAVG 135 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A+ + ID+HNI+ AT A+Y A+ENL V P LID ++ + L A+IKGD+ S+ Sbjct: 136 VATPEEIDEHNIYVATQIAMYRAIENLSVTPTHYLIDAMTL-DHLTAPQQAIIKGDAKSV 194 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASIIAKV RD LM K+YP Y F + GY T KH +K+ G + IHR TF P+ Sbjct: 195 SIAAASIIAKVYRDDLMAEYAKQYPGYDFAQNAGYGTQKHLDGLKQYGVTTIHRKTFEPI 254 Query: 205 RNL 207 +++ Sbjct: 255 KSM 257 >gi|229541107|ref|ZP_04430167.1| Ribonuclease H [Bacillus coagulans 36D1] gi|229325527|gb|EEN91202.1| Ribonuclease H [Bacillus coagulans 36D1] Length = 255 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 84/193 (43%), Positives = 120/193 (62%), Gaps = 2/193 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +R +AGIDE GRG LAGPVV AA+IL + G+NDSK++S K+RE + Sbjct: 59 FEDALRSHGCRLIAGIDEAGRGPLAGPVVAAAVILPEDFYLPGLNDSKQLSEKQREAFFA 118 Query: 74 KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 +I ++ + AS + ID+ NI++A A+ A+ +L P LID IP P Sbjct: 119 RIQEETLVGVGFASAEEIDRMNIYEAAKKAMLAALGHLPAAPDHLLIDAMEIPASYPQT- 177 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +++KGD+ S+SIAAAS++AKVTRDR M+ +KYP YGF H GY T KH + + + GP Sbjct: 178 -SIVKGDAKSISIAAASVVAKVTRDRYMQEMDEKYPGYGFAIHKGYGTKKHLEALMKLGP 236 Query: 194 SCIHRLTFRPLRN 206 IHR +F P+++ Sbjct: 237 CPIHRKSFAPIKD 249 >gi|217961257|ref|YP_002339825.1| ribonuclease HII [Bacillus cereus AH187] gi|229197947|ref|ZP_04324662.1| Ribonuclease [Bacillus cereus m1293] gi|226736815|sp|B7HLH0|RNH2_BACC7 RecName: Full=Ribonuclease HII; Short=RNase HII gi|217062970|gb|ACJ77220.1| ribonuclease HII [Bacillus cereus AH187] gi|228585526|gb|EEK43629.1| Ribonuclease [Bacillus cereus m1293] Length = 257 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 93/194 (47%), Positives = 130/194 (67%), Gaps = 3/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y++ Sbjct: 63 ENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPKDFYIPGLNDSKKLSEAKRERFYDE 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I + AI I + S Q ID+ NI++AT A+ AV NL P+ LID +P +P Sbjct: 123 IKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPTPIP--Q 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHGI 240 Query: 194 SCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 241 LEEHRKSFAPIKDM 254 >gi|157147385|ref|YP_001454704.1| ribonuclease HII [Citrobacter koseri ATCC BAA-895] gi|166225182|sp|A8ALA5|RNH2_CITK8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|157084590|gb|ABV14268.1| hypothetical protein CKO_03183 [Citrobacter koseri ATCC BAA-895] Length = 198 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 110/182 (60%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LY++I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALYDEIKEKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P LP + AV+KGDS Sbjct: 72 RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPA-LPVPSMAVVKGDSRVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKVTRD M +P YGF H GYPTA H + E G + HR +F P+ Sbjct: 131 EISAASIIAKVTRDAEMAALDGIFPQYGFAQHKGYPTAFHLAALAEHGATEHHRRSFAPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|42782929|ref|NP_980176.1| ribonuclease HII [Bacillus cereus ATCC 10987] gi|222097282|ref|YP_002531339.1| ribonuclease hii [Bacillus cereus Q1] gi|73917595|sp|Q732N3|RNH2_BACC1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807967|sp|B9IVC6|RNH2_BACCQ RecName: Full=Ribonuclease HII; Short=RNase HII gi|42738856|gb|AAS42784.1| ribonuclease HII [Bacillus cereus ATCC 10987] gi|221241340|gb|ACM14050.1| ribonuclease HII [Bacillus cereus Q1] Length = 257 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 93/194 (47%), Positives = 130/194 (67%), Gaps = 3/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y++ Sbjct: 63 ENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYDE 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I + AI I + S Q ID+ NI++AT A+ AV NL P+ LID +P +P Sbjct: 123 IKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPTPIP--Q 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHGI 240 Query: 194 SCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 241 LEEHRKSFAPIKDM 254 >gi|47570338|ref|ZP_00240983.1| ribonuclease HII [Bacillus cereus G9241] gi|47553003|gb|EAL11409.1| ribonuclease HII [Bacillus cereus G9241] gi|324327734|gb|ADY22994.1| ribonuclease HII [Bacillus thuringiensis serovar finitimus YBT-020] Length = 257 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 93/194 (47%), Positives = 130/194 (67%), Gaps = 3/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y++ Sbjct: 63 ENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYDE 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I + AI I + S Q ID+ NI++AT A+ AV NL P+ LID +P +P Sbjct: 123 IKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPTPIP--Q 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHGI 240 Query: 194 SCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 241 LEEHRKSFAPIKDM 254 >gi|262369617|ref|ZP_06062945.1| ribonuclease HII [Acinetobacter johnsonii SH046] gi|262315685|gb|EEY96724.1| ribonuclease HII [Acinetobacter johnsonii SH046] Length = 192 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 82/183 (44%), Positives = 113/183 (61%), Gaps = 1/183 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 +AG DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A+ + Sbjct: 3 IAGADEAGRGPLVGSVVAAAVILDPNNPIQGLNDSKKLTEKKREKLFVEIQEKALAWAIA 62 Query: 86 ASHQYI-DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + D+ NI +A+L A+ AVE L + P L+DG IP+ L A++ GD++ Sbjct: 63 EASAAEIDEINILQASLLAMRRAVEQLTIQPEHVLVDGNKIPQGLSMSCEAIVGGDALHA 122 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +KYP +GF H GYPT H + I E G HR +F P+ Sbjct: 123 EISAASILAKVTRDHQMIEMDRKYPQFGFAKHKGYPTKAHFEAIAEHGVIDEHRRSFGPV 182 Query: 205 RNL 207 + + Sbjct: 183 KKV 185 >gi|301630622|ref|XP_002944415.1| PREDICTED: lipid-A-disaccharide synthase-like [Xenopus (Silurana) tropicalis] Length = 550 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 85/182 (46%), Positives = 120/182 (65%), Gaps = 4/182 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DE GRG LAGPVV AA+ILD G+ DSKK+S +RE L+++I + A+ SI+ Sbjct: 371 IAGVDEAGRGPLAGPVVAAAVILDAQRPIAGLADSKKLSPARREALFDEIHAHALCCSIA 430 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 AS + ID+ NI +ATL A+ AV+ L++ P LIDG +P D+P +A ++KGD+ Sbjct: 431 EASVEEIDRLNILQATLLAMRRAVQGLRLQPAMVLIDGNRLPVLDVPAEA--IVKGDARV 488 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKV RDR H++YP YGF +H GY TA H ++ G HR TF P Sbjct: 489 PAISAASILAKVQRDRWCMQLHERYPQYGFATHKGYGTAAHIAALRAHGACPEHRRTFAP 548 Query: 204 LR 205 ++ Sbjct: 549 VK 550 >gi|253578396|ref|ZP_04855668.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850714|gb|EES78672.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 251 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 86/177 (48%), Positives = 118/177 (66%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG LAGPVV A+IL ++ +NDSKK+S KREELY+ I A+ + I Sbjct: 71 LCGIDEVGRGPLAGPVVACAVILPQDSRILYLNDSKKLSASKREELYDVIMREAVSVGIG 130 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S + ID+ NI +AT +A+ AV L+V+P+ L D +IP+ + +IKGD+ S+ Sbjct: 131 MRSPERIDEINILQATYEAMREAVSKLEVVPQLLLNDAVTIPQ-ITIPQVPIIKGDAKSV 189 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASI+AKVTRDR+M K +P+YGF S+ GY +A H +K+ G + IHR TF Sbjct: 190 SIAAASIVAKVTRDRMMEEYDKVFPEYGFASNKGYGSADHIAALKKYGETPIHRKTF 246 >gi|257869680|ref|ZP_05649333.1| ribonuclease HII [Enterococcus gallinarum EG2] gi|257803844|gb|EEV32666.1| ribonuclease HII [Enterococcus gallinarum EG2] Length = 257 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 88/194 (45%), Positives = 127/194 (65%), Gaps = 3/194 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + +K + VAG+DEVGRG LAGPVV AA++L N G+NDSK++S KKREEL+ Sbjct: 63 FEQELYQKGLRFVAGLDEVGRGPLAGPVVAAAVVLPKNCGIIGLNDSKQLSAKKREELFI 122 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + A+ I I A H+ ID+ NI++A+ +A+ A+ +L + P L+D ++ D+P Sbjct: 123 EIQNKAVAIGIGIADHEEIDRVNIYQASKNAMKRALADLSITPEHLLVDAMTLDTDIP-- 180 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SIAAASI+AKV RD LM+ H +P YGFD + GY T H + + G Sbjct: 181 QTSLIKGDARSISIAAASIMAKVFRDNLMKDYHGVFPHYGFDQNAGYGTKTHLEGLAAHG 240 Query: 193 PSCIHRLTFRPLRN 206 IHR TF P++ Sbjct: 241 ICPIHRKTFAPVKQ 254 >gi|229019032|ref|ZP_04175873.1| Ribonuclease [Bacillus cereus AH1273] gi|229025278|ref|ZP_04181698.1| Ribonuclease [Bacillus cereus AH1272] gi|228736031|gb|EEL86606.1| Ribonuclease [Bacillus cereus AH1272] gi|228742272|gb|EEL92431.1| Ribonuclease [Bacillus cereus AH1273] Length = 255 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 94/194 (48%), Positives = 127/194 (65%), Gaps = 3/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +REK + +AGIDEVGRG LAGPVV AA++L G+NDSKK+S KRE Y++ Sbjct: 63 EHALREKGIMYIAGIDEVGRGPLAGPVVTAAVVLPEEFYIPGLNDSKKLSEAKRERFYDE 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI I + S Q ID+ NI++AT A+ AV NL P LID +P +P Sbjct: 123 IKEHAIAIGVGIVSPQIIDEINIYQATKQAMLDAVANLSCTPEYLLIDAMKLPTSIP--Q 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ S+SI+AASIIAKVTRDR+M+ KKYP YGF+ H+GY T +H + I+ G Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGKKYPAYGFEQHMGYGTKQHLEAIESHGV 240 Query: 194 SCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 241 LEEHRKSFAPIKDM 254 >gi|77165488|ref|YP_344013.1| ribonuclease H [Nitrosococcus oceani ATCC 19707] gi|254433570|ref|ZP_05047078.1| ribonuclease HII [Nitrosococcus oceani AFC27] gi|97189090|sp|Q3J9L3|RNH2_NITOC RecName: Full=Ribonuclease HII; Short=RNase HII gi|76883802|gb|ABA58483.1| RNase HII [Nitrosococcus oceani ATCC 19707] gi|207089903|gb|EDZ67174.1| ribonuclease HII [Nitrosococcus oceani AFC27] Length = 201 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 81/183 (44%), Positives = 110/183 (60%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG LAGPV+ A+ILDP G+ DSK+++ RE L I + A+ ++ Sbjct: 17 VAGVDEVGRGPLAGPVIAGAVILDPECPISGVKDSKQLTAPARERLAALIQAQAVAWALG 76 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI +A+L A+ A+ L V+P L+DG+ P + C A++KGD + Sbjct: 77 RAEAAEIDQFNILQASLLAMERAISALSVVPDLVLVDGKHCPPTV-CPVRAIVKGDQQIM 135 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I AASI+AKV RD M + YP YGF H GYPT H +K GP IHR +FRP+ Sbjct: 136 AIGAASIVAKVARDAEMIAFEESYPGYGFGIHKGYPTRAHLAALKALGPCSIHRRSFRPV 195 Query: 205 RNL 207 R Sbjct: 196 RRF 198 >gi|261338819|ref|ZP_05966677.1| hypothetical protein ENTCAN_05014 [Enterobacter cancerogenus ATCC 35316] gi|288318642|gb|EFC57580.1| ribonuclease HII [Enterobacter cancerogenus ATCC 35316] Length = 198 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 112/182 (61%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L+++I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALFDEIQEKALAWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L++ P LIDG P LP + AV+KGDS Sbjct: 72 RAEPHEIDELNILHATMLAMQRAVAGLKITPEYVLIDGNRCPA-LPVPSMAVVKGDSRVP 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKVTRD M YP YGF H GYPTA H + + E G + HR +F P+ Sbjct: 131 EISAASIIAKVTRDAEMAALDLTYPLYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|326693008|ref|ZP_08230013.1| ribonuclease HII [Leuconostoc argentinum KCTC 3773] Length = 258 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 87/200 (43%), Positives = 121/200 (60%), Gaps = 3/200 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F EA + + VAG+DEVGRG LAGPVV AA+IL + + DSK++S K R Sbjct: 56 KTRFTFEAQQWAQGLSHVAGVDEVGRGPLAGPVVAAAVILPHDFAELDVIDSKQLSEKMR 115 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E+L+++I + A+ I I ID NI++A A+ AV L P LID ++ Sbjct: 116 EQLFDRIIAQALSIGIGVVDATVIDDINIYEAARLAMTQAVAELAPEPDYLLIDAMTLQT 175 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D+P ++IKGD+ S SIAAASIIAKVTRDR+M ++YP YGF H GY T H Sbjct: 176 DIPQ--LSLIKGDARSNSIAAASIIAKVTRDRMMADYDRQYPGYGFAQHAGYGTKAHLAA 233 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 + E G + IHR +F P++++ Sbjct: 234 LAELGVTPIHRRSFAPVKSV 253 >gi|148656899|ref|YP_001277104.1| ribonuclease HII [Roseiflexus sp. RS-1] gi|189043651|sp|A5UX01|RNH2_ROSS1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|148569009|gb|ABQ91154.1| Ribonuclease H [Roseiflexus sp. RS-1] Length = 227 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/201 (45%), Positives = 121/201 (60%), Gaps = 7/201 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-----DPNNIPFGINDSKKIS 64 P E E +R +AG+DE GRG LAGPVV AA+IL D ++ G+ DSK +S Sbjct: 6 PTVEEERALRAAGYRAIAGLDEAGRGCLAGPVVAAAVILPDAVIDTPDVLDGVADSKMLS 65 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +R +L+E+ITS A+ ++ + ID H I AT A+ A+ L + LID Sbjct: 66 PAQRADLFERITSLAVAWAVGATPAHIIDSHGILPATRLAMQVALLRLPRPADALLIDAV 125 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 ++ ++ P A+IKGD+ LSIAAASIIAKVTRDRLM +P YGF SH GY T + Sbjct: 126 TL-DNWPLPQRALIKGDARCLSIAAASIIAKVTRDRLMDALDACWPQYGFASHKGYGTVQ 184 Query: 184 HQQVIKEKGPSCIHRLTFRPL 204 HQQ ++ GP+ HR TFRPL Sbjct: 185 HQQALRRYGPTPHHRRTFRPL 205 >gi|189043611|sp|A7H722|RNH2_ANADF RecName: Full=Ribonuclease HII; Short=RNase HII Length = 315 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 85/193 (44%), Positives = 119/193 (61%), Gaps = 7/193 (3%) Query: 20 EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +W VAG+DE G LAGPVV A IL + P GI+DSK++ ++RE L E Sbjct: 69 EGELWDGGVTLVAGVDEAGMAPLAGPVVAGACILPRDYRPRGIDDSKQLDRRERERLAED 128 Query: 75 ITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I ++A+ +++ A + ID+ NI++A L A+ AV+ L P L+D R +PE L Sbjct: 129 IKANAVCWAVARAEVEEIDRLNIYRAGLLALTRAVQALTPAPGHVLVDARKLPE-LRLPQ 187 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +I GD++SL+IAAASI+AK TRD LM YP YGF +H GYPTA+H Q ++ G Sbjct: 188 TPIIHGDALSLTIAAASILAKTTRDELMGELDALYPGYGFCNHKGYPTAEHFQALERLGA 247 Query: 194 SCIHRLTFRPLRN 206 IHR +F+P+R Sbjct: 248 CPIHRRSFQPVRE 260 >gi|298245602|ref|ZP_06969408.1| Ribonuclease H [Ktedonobacter racemifer DSM 44963] gi|297553083|gb|EFH86948.1| Ribonuclease H [Ktedonobacter racemifer DSM 44963] Length = 223 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 86/206 (41%), Positives = 124/206 (60%), Gaps = 9/206 (4%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPF-----GINDSKK 62 P E + E+ +AG+DE GRG LAGPVV AA+IL + N P G+NDSK+ Sbjct: 9 PTLTEEMALFEQGYCFIAGLDEAGRGCLAGPVVAAAVILPLESNPTPVLARFTGVNDSKQ 68 Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 ++ RE LY+ I A+ + + S + ID+ NI +ATL ++ A+ L ++ L+D Sbjct: 69 LNEATRERLYDVIMEHALAVGVGIGSVELIDQRNILQATLQSMRVALTQLTPTAQALLLD 128 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + D+P ++ KGDS LSIAAASIIAKVTRDRLM H+++P YGF H GY T Sbjct: 129 AVRL-RDIPLPQLSLTKGDSRCLSIAAASIIAKVTRDRLMHQLHEEFPRYGFKQHKGYGT 187 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207 +H + +K+ G + HR +F P+R + Sbjct: 188 PEHLEALKQFGVTPHHRRSFSPIREM 213 >gi|312796258|ref|YP_004029180.1| ribonuclease HII [Burkholderia rhizoxinica HKI 454] gi|312168033|emb|CBW75036.1| Ribonuclease HII (EC 3.1.26.4) [Burkholderia rhizoxinica HKI 454] Length = 232 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 84/183 (45%), Positives = 118/183 (64%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII-SI 83 V G+DE GRG LAGPVV AA+ILDP G++DSK +S RE+L+++I ++ + Sbjct: 31 VCGVDEAGRGPLAGPVVAAAVILDPAAPRIRGLDDSKALSPATREKLFDRIVERSLAYCV 90 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS + ID NI AT+ A+ AV+ L + P +DG P L ++ AVI GD++ Sbjct: 91 ASASVEEIDTLNILHATMLAMQRAVQGLALTPALVKVDGNRCPV-LSVRSEAVIGGDALV 149 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR+M H ++P YGFD+HVGY T +H ++ GP HR +F P Sbjct: 150 PSISAASILAKVTRDRMMHALHDEFPHYGFDAHVGYGTPRHLAALRIHGPCVHHRRSFAP 209 Query: 204 LRN 206 +R Sbjct: 210 VRK 212 >gi|291527941|emb|CBK93527.1| Ribonuclease HII [Eubacterium rectale M104/1] Length = 253 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 86/177 (48%), Positives = 117/177 (66%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG LAGPVV A+IL + INDSKK++ KR+ELY+ I A+ + I Sbjct: 73 ICGIDEVGRGPLAGPVVACAVILPKDCDILYINDSKKLTAAKRDELYDVIMEKAVSVGIG 132 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 ASH+ ID+ NI +AT +A+ A++ L P L D +IP + + +IKGD+ S+ Sbjct: 133 MASHERIDEINILQATYEAMRQAIKKLDPAPDLTLNDAVTIP-GVDIKQVPIIKGDAKSI 191 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SI AASI+AKVTRDR+M + YP YGF S+ GY +A+H + +KE GPS IHR +F Sbjct: 192 SIGAASIVAKVTRDRMMVEYDRIYPGYGFASNKGYGSAEHIKALKEIGPSQIHRASF 248 >gi|319793969|ref|YP_004155609.1| ribonuclease h [Variovorax paradoxus EPS] gi|315596432|gb|ADU37498.1| Ribonuclease H [Variovorax paradoxus EPS] Length = 238 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 82/180 (45%), Positives = 118/180 (65%), Gaps = 2/180 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DE GRG LAGPVV AA+ILD G+ DSK ++ +RE L+++I + A+ SI+ Sbjct: 22 LAGVDEAGRGPLAGPVVAAAVILDDTRPIRGLADSKTLTALQRERLHDQILAKALCCSIA 81 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID HNI +AT+ A+ AVE L++ P L+DG +P L A AV+KGD++ Sbjct: 82 QASVEEIDTHNILQATMIAMRRAVEGLRLKPAKVLVDGNRLP-TLDVLAEAVVKGDALVK 140 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKV RDRL H ++P YGF H GY T +H + +++ G HR +F P+ Sbjct: 141 AISAASILAKVHRDRLCEQLHTEFPHYGFAGHKGYGTPEHLEALQKHGACVHHRRSFSPV 200 >gi|153003177|ref|YP_001377502.1| ribonuclease HII [Anaeromyxobacter sp. Fw109-5] gi|152026750|gb|ABS24518.1| Ribonuclease H [Anaeromyxobacter sp. Fw109-5] Length = 338 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 85/193 (44%), Positives = 119/193 (61%), Gaps = 7/193 (3%) Query: 20 EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +W VAG+DE G LAGPVV A IL + P GI+DSK++ ++RE L E Sbjct: 92 EGELWDGGVTLVAGVDEAGMAPLAGPVVAGACILPRDYRPRGIDDSKQLDRRERERLAED 151 Query: 75 ITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I ++A+ +++ A + ID+ NI++A L A+ AV+ L P L+D R +PE L Sbjct: 152 IKANAVCWAVARAEVEEIDRLNIYRAGLLALTRAVQALTPAPGHVLVDARKLPE-LRLPQ 210 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +I GD++SL+IAAASI+AK TRD LM YP YGF +H GYPTA+H Q ++ G Sbjct: 211 TPIIHGDALSLTIAAASILAKTTRDELMGELDALYPGYGFCNHKGYPTAEHFQALERLGA 270 Query: 194 SCIHRLTFRPLRN 206 IHR +F+P+R Sbjct: 271 CPIHRRSFQPVRE 283 >gi|52141651|ref|YP_085178.1| ribonuclease HII [Bacillus cereus E33L] gi|81686573|sp|Q636I9|RNH2_BACCZ RecName: Full=Ribonuclease HII; Short=RNase HII gi|51975120|gb|AAU16670.1| ribonuclease HII (RNase HII) [Bacillus cereus E33L] Length = 257 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 94/194 (48%), Positives = 129/194 (66%), Gaps = 3/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +REK + +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KRE Y++ Sbjct: 63 ENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYDE 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I + AI I + S Q ID+ NI++AT A+ AV NL P LID +P +P Sbjct: 123 IKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPEYLLIDAMKLPTPIP--Q 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEVHGV 240 Query: 194 SCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 241 LEEHRKSFAPIKDM 254 >gi|303231457|ref|ZP_07318188.1| ribonuclease HII [Veillonella atypica ACS-049-V-Sch6] gi|302513894|gb|EFL55905.1| ribonuclease HII [Veillonella atypica ACS-049-V-Sch6] Length = 266 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 87/197 (44%), Positives = 132/197 (67%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ E M ++ ++ VAG+DEVGRG +AGPV VAA+IL P + G+NDSKK++ +KRE L Sbjct: 63 YDYEGMFYDEGLYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREVL 122 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ +S S + ID+ NI++AT A+Y A+ L V + + D +P DL Sbjct: 123 YDIIMEEAVAVSCISYGPEKIDELNIYEATRQAMYEAIRTLDVPAEAVVADAMKLP-DLT 181 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGDS S +IAAASIIAKVTRDR M+ ++YP YGF H GY T H++ +++ Sbjct: 182 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDEEYPGYGFGIHKGYYTELHKEAVEQ 241 Query: 191 KGPSCIHRLTFRPLRNL 207 +G + +HR +F P++++ Sbjct: 242 QGVTPLHRKSFEPIKSI 258 >gi|254508672|ref|ZP_05120787.1| ribonuclease HII [Vibrio parahaemolyticus 16] gi|219548429|gb|EED25439.1| ribonuclease HII [Vibrio parahaemolyticus 16] Length = 205 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 92/201 (45%), Positives = 119/201 (59%), Gaps = 12/201 (5%) Query: 17 MVREKNMWP----------VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 M +EK P VAG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S K Sbjct: 1 MAKEKQELPPFEYPQGYQHVAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEK 60 Query: 67 KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KR L +I A+ S+ + ID+ NI +AT+ A+ A+ L+V P ALIDG Sbjct: 61 KRLALLPEIQEKALAWSVGRCTPAEIDELNILQATMVAMQRAIAGLKVQPDLALIDGNRC 120 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P LP A AV+KGD I+AASIIAKV RD+ M K +P++GF H GYPT H Sbjct: 121 PA-LPMDAQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKLHPEFGFAKHKGYPTKAHF 179 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 + I+ G HR +F+P++ Sbjct: 180 EAIEAHGVIDQHRKSFKPVKK 200 >gi|242240382|ref|YP_002988563.1| ribonuclease HII [Dickeya dadantii Ech703] gi|242132439|gb|ACS86741.1| Ribonuclease H [Dickeya dadantii Ech703] Length = 198 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 86/183 (46%), Positives = 113/183 (61%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSK++S K+R LY++I A S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPAKPIAGLADSKQLSEKRRRVLYDEIREKARAWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L V P LIDG P LP + AV+KGDS Sbjct: 73 RAEPEEIDQLNILHATMLAMQRAVAGLPVTPDYVLIDGNRCP-SLPMPSMAVVKGDSRVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M K +P+YGF H GYPTA H + + G + HR +F P+ Sbjct: 132 EISAASILAKVTRDREMEELDKLFPEYGFAQHKGYPTAYHLEKLATLGATLHHRRSFAPV 191 Query: 205 RNL 207 + + Sbjct: 192 KRV 194 >gi|184155373|ref|YP_001843713.1| ribonuclease HII [Lactobacillus fermentum IFO 3956] gi|238692975|sp|B2GC51|RNH2_LACF3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|183226717|dbj|BAG27233.1| ribonuclease HII [Lactobacillus fermentum IFO 3956] gi|299783202|gb|ADJ41200.1| Ribonuclease HII (RNase HII) [Lactobacillus fermentum CECT 5716] Length = 256 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 84/191 (43%), Positives = 119/191 (62%), Gaps = 8/191 (4%) Query: 20 EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +W VAGIDEVGRG LAGPVV A++LD G+ DSK++S +RE+LY + Sbjct: 63 ENQLWQAGHQYVAGIDEVGRGPLAGPVVTCAVVLDSQFDLVGVTDSKQLSRHEREQLYLR 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A+ +S++ + Q ID+ NI+ AT A+ +V+ L P ++D ++P D+P Sbjct: 123 ILDEAVEVSLAVSPAQEIDRLNIYAATQTAMIRSVKALHHQPSHLIVD--AVPLDIPVPQ 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGD S+S+AAASI+AK RD LM I + YP YGF ++GY TA H +++ G Sbjct: 181 TTLIKGDQKSISVAAASIVAKEYRDHLMAIYDRLYPGYGFKDNMGYGTAAHLAGLEQLGA 240 Query: 194 SCIHRLTFRPL 204 IHR TFRP+ Sbjct: 241 CPIHRRTFRPV 251 >gi|218961310|ref|YP_001741085.1| ribonuclease HII [Candidatus Cloacamonas acidaminovorans] gi|167729967|emb|CAO80879.1| ribonuclease HII [Candidatus Cloacamonas acidaminovorans] Length = 204 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 97/177 (54%), Positives = 118/177 (66%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AGIDE GRGALAGPVV AA+IL+ N + GINDSK ++ KKREELY +I SAI SI Sbjct: 21 AGIDEAGRGALAGPVVTAAVILNYNTLIEGINDSKLLTPKKREELYWQIVESAIDYSIVE 80 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S YID++NI +ATL A L+ PR LIDGR I +L A A+IKGD + S Sbjct: 81 ISPAYIDRYNILRATLLGFKKAFFQLKSKPRYCLIDGRDIHSELKPYAKAIIKGDQLYAS 140 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AKV RD+LM YP+YGF S+ GY TA H ++I G S IHR +F+ Sbjct: 141 IAAASILAKVHRDKLMLAYDDIYPEYGFASNKGYGTAYHAKMICSYGLSPIHRKSFK 197 >gi|153831009|ref|ZP_01983676.1| ribonuclease HII [Vibrio cholerae 623-39] gi|148873517|gb|EDL71652.1| ribonuclease HII [Vibrio cholerae 623-39] Length = 180 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 88/178 (49%), Positives = 111/178 (62%), Gaps = 7/178 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE+ A +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S KK Sbjct: 8 ELPPFEIPA-----GYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSEKK 62 Query: 68 REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L+ +I A+ ++ S Q ID+ NI +AT+ A+ AV L++ P LIDG IP Sbjct: 63 RLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNKIP 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + LP A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 123 K-LPMAAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179 >gi|153854846|ref|ZP_01996069.1| hypothetical protein DORLON_02074 [Dorea longicatena DSM 13814] gi|149752548|gb|EDM62479.1| hypothetical protein DORLON_02074 [Dorea longicatena DSM 13814] Length = 194 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 91/177 (51%), Positives = 115/177 (64%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84 + GIDEVGRG AGPVV A+IL ++ +NDSKK+S KKRE LY++I A+ + I Sbjct: 14 ICGIDEVGRGPFAGPVVAGAVILPKDDPILYLNDSKKLSEKKREALYDEIMERAVATGIG 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S ID+ NI +AT +A+ A+ NL+V P L D +IPE + +IKGD+ S+ Sbjct: 74 VVSPARIDEINILQATYEAMRMAIGNLKVQPDLLLNDAVTIPE-VEIPQVPIIKGDAKSV 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASIIAKVTRDRLM K P Y F S+ GY T KH + +KE GPS IHR TF Sbjct: 133 SIAAASIIAKVTRDRLMVEYDKVLPGYDFASNKGYGTKKHIEGLKELGPSPIHRRTF 189 >gi|228928885|ref|ZP_04091917.1| Ribonuclease [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229092879|ref|ZP_04224013.1| Ribonuclease [Bacillus cereus Rock3-42] gi|228690501|gb|EEL44284.1| Ribonuclease [Bacillus cereus Rock3-42] gi|228830692|gb|EEM76297.1| Ribonuclease [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 257 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 93/194 (47%), Positives = 129/194 (66%), Gaps = 3/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +REK + +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KRE Y++ Sbjct: 63 ENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYDE 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I + AI I + S Q ID+ NI++AT A+ A+ NL P LID +P +P Sbjct: 123 IKAKAIAIGVGIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPTPIP--Q 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHGV 240 Query: 194 SCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 241 LEEHRKSFAPIKDM 254 >gi|86609281|ref|YP_478043.1| ribonuclease HII [Synechococcus sp. JA-2-3B'a(2-13)] gi|97189393|sp|Q2JKK9|RNH2_SYNJB RecName: Full=Ribonuclease HII; Short=RNase HII gi|86557823|gb|ABD02780.1| ribonuclease HII [Synechococcus sp. JA-2-3B'a(2-13)] Length = 213 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 88/206 (42%), Positives = 129/206 (62%), Gaps = 8/206 (3%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKIS 64 RP E + ++ + VAG+DEVGRGALAGPVV AA+IL DP + G+ DSK++ Sbjct: 6 RPSLIWEGSLWQQGILRVAGVDEVGRGALAGPVVAAAVILPAQMDPKELE-GVRDSKQLR 64 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 ++R + E+I A+ + + SAS ID+ NI +AT+ A+ A+ L I L+DG Sbjct: 65 PQQRAQWAERIRQVALAVGVGSASAAEIDRLNIRQATVLAMQRALAKLDPI-EHILLDGL 123 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + E L + A++KGD ISLSIAAAS++AKV RD LM+ ++YP YG+ ++ GY T + Sbjct: 124 PLAE-LGSRQTALVKGDHISLSIAAASVVAKVWRDALMQSWDRQYPGYGWRTNAGYGTRE 182 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLSV 209 H+ ++ GP+ HR +F PL L V Sbjct: 183 HRLALQNLGPTPQHRRSFAPLAELKV 208 >gi|62178800|ref|YP_215217.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161612603|ref|YP_001586568.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553356|ref|ZP_02347105.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168235010|ref|ZP_02660068.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168264638|ref|ZP_02686611.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464205|ref|ZP_02698108.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168823100|ref|ZP_02835100.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194734669|ref|YP_002113253.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249555|ref|YP_002145235.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204926664|ref|ZP_03217866.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205351567|ref|YP_002225368.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|224582078|ref|YP_002635876.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|73917832|sp|Q57T25|RNH2_SALCH RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043655|sp|A9N0T3|RNH2_SALPB RecName: Full=Ribonuclease HII; Short=RNase HII gi|238689765|sp|B4TYE3|RNH2_SALSV RecName: Full=Ribonuclease HII; Short=RNase HII gi|238690066|sp|B5F8U4|RNH2_SALA4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|238690468|sp|B5R5I6|RNH2_SALG2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807986|sp|C0Q6K6|RNH2_SALPC RecName: Full=Ribonuclease HII; Short=RNase HII gi|62126433|gb|AAX64136.1| RNAse HII [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161361967|gb|ABX65735.1| hypothetical protein SPAB_00294 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194710171|gb|ACF89392.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195632881|gb|EDX51335.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213258|gb|ACH50655.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197291997|gb|EDY31347.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204323329|gb|EDZ08524.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205271348|emb|CAR36141.1| Ribonuclease HII [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322169|gb|EDZ10008.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205340607|gb|EDZ27371.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205346925|gb|EDZ33556.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224466605|gb|ACN44435.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320084484|emb|CBY94277.1| RNAse HII [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322616054|gb|EFY12971.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620837|gb|EFY17697.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623812|gb|EFY20649.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627260|gb|EFY24051.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630567|gb|EFY27331.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638215|gb|EFY34916.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640700|gb|EFY37351.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645516|gb|EFY42043.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648190|gb|EFY44657.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322657141|gb|EFY53424.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657511|gb|EFY53783.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663831|gb|EFY60031.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666664|gb|EFY62842.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672178|gb|EFY68290.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676511|gb|EFY72582.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679397|gb|EFY75442.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686276|gb|EFY82260.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322713254|gb|EFZ04825.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323193456|gb|EFZ78664.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197522|gb|EFZ82657.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201209|gb|EFZ86278.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209604|gb|EFZ94537.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212144|gb|EFZ96968.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216449|gb|EGA01175.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223361|gb|EGA07696.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225922|gb|EGA10142.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228537|gb|EGA12666.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236850|gb|EGA20926.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239650|gb|EGA23697.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242303|gb|EGA26332.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249965|gb|EGA33861.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252395|gb|EGA36246.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255678|gb|EGA39431.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262885|gb|EGA46435.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265371|gb|EGA48867.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271842|gb|EGA55260.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326626594|gb|EGE32937.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 198 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 86/182 (47%), Positives = 111/182 (60%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LY++I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLSLYDEIKEKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P LP + AV+KGDS Sbjct: 72 RAEAHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPA-LPVPSMAVVKGDSRVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H + + + G + HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAQYGATAHHRRSFAPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|289423531|ref|ZP_06425332.1| ribonuclease HII [Peptostreptococcus anaerobius 653-L] gi|289156033|gb|EFD04697.1| ribonuclease HII [Peptostreptococcus anaerobius 653-L] Length = 266 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 93/183 (50%), Positives = 112/183 (61%), Gaps = 4/183 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAGIDEVGRG LAGPVV A +IL GINDSKKI KKREELY+ I A+ I Sbjct: 83 VAGIDEVGRGPLAGPVVAAVVILKKGTKIRGINDSKKIPEKKREELYDLILDQALDYGIG 142 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID+HNI AT A+ A++ L+ P L D IP + +IKGDS S+ Sbjct: 143 MASPSEIDEHNILNATYIAMRRAIDKLKYRPDCLLNDAVRIP-GVDIHQVPIIKGDSKSI 201 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI AASI+AKVTRDR+M K+YP Y F S+ GY T +H I+ KG IHR +F L Sbjct: 202 SIGAASIVAKVTRDRMMYDYDKEYPGYNFSSNKGYGTNEHYDGIRAKGKCPIHRESF--L 259 Query: 205 RNL 207 +N Sbjct: 260 KNF 262 >gi|227515157|ref|ZP_03945206.1| ribonuclease H [Lactobacillus fermentum ATCC 14931] gi|227086489|gb|EEI21801.1| ribonuclease H [Lactobacillus fermentum ATCC 14931] Length = 256 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 84/191 (43%), Positives = 119/191 (62%), Gaps = 8/191 (4%) Query: 20 EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +W VAGIDEVGRG LAGPVV A++LD G+ DSK++S +RE+LY + Sbjct: 63 ENQLWQAGHQYVAGIDEVGRGPLAGPVVTCAVVLDSQFDLVGVTDSKQLSRHEREQLYLR 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A+ +S++ + Q ID+ NI+ AT A+ +V+ L P ++D ++P D+P Sbjct: 123 ILDEAVEVSLAVSPAQEIDRLNIYAATQAAMIRSVKALHHQPSHLIVD--AVPLDIPVPQ 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGD S+S+AAASI+AK RD LM I + YP YGF ++GY TA H +++ G Sbjct: 181 TTLIKGDQKSISVAAASIVAKEYRDHLMAIYDRLYPGYGFKDNMGYGTAAHLAGLEQLGA 240 Query: 194 SCIHRLTFRPL 204 IHR TFRP+ Sbjct: 241 CPIHRRTFRPV 251 >gi|331002666|ref|ZP_08326181.1| ribonuclease HII [Lachnospiraceae oral taxon 107 str. F0167] gi|330407079|gb|EGG86583.1| ribonuclease HII [Lachnospiraceae oral taxon 107 str. F0167] Length = 214 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 92/195 (47%), Positives = 126/195 (64%), Gaps = 10/195 (5%) Query: 14 LEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKK 67 LE M +N + +AG+DE GRG LAGPVV AA+IL P +I PF +NDSKK++ K+ Sbjct: 16 LEGMREFENKYSDLAYIAGLDEAGRGPLAGPVVAAAVIL-PKDIFLPF-LNDSKKVTEKR 73 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R+ L+++I +AI I AS+ ID+ NI +AT +A+ A+ L P L+D IP Sbjct: 74 RDVLFDEIKQNAIAYGIGIASNTLIDEINILQATYEAMREAINALSTRPDILLVDAIHIP 133 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + + ++KGD+ S++IAAASI+AKVTRDRLM K YP+YGF S+ GY TA H Sbjct: 134 -GIDIRQVGIVKGDAKSVNIAAASILAKVTRDRLMAEYDKIYPEYGFASNKGYGTAAHIA 192 Query: 187 VIKEKGPSCIHRLTF 201 +KE GP IHR +F Sbjct: 193 ALKEYGPCEIHRKSF 207 >gi|152979547|ref|YP_001345176.1| ribonuclease HII [Actinobacillus succinogenes 130Z] gi|171704350|sp|A6VQJ4|RNH2_ACTSZ RecName: Full=Ribonuclease HII; Short=RNase HII gi|150841270|gb|ABR75241.1| Ribonuclease H [Actinobacillus succinogenes 130Z] Length = 202 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 85/183 (46%), Positives = 115/183 (62%), Gaps = 4/183 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L +I A+ S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPNNPISGLADSKKLSEKKRLVLAAEIKEKALAWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV++L+++P L+DG +PE D+P QA +IKGD Sbjct: 73 RAEAEEIDELNILHATMLAMRRAVKSLKILPHLVLVDGNRVPELDMPAQA--IIKGDGKV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RD+ M K++P Y F H GYPT H + + G HR +F P Sbjct: 131 AEISAASILAKVARDQEMETLDKQFPQYEFAKHKGYPTKVHLEKLMRFGALPQHRRSFAP 190 Query: 204 LRN 206 +R Sbjct: 191 VRK 193 >gi|307824003|ref|ZP_07654230.1| Ribonuclease H [Methylobacter tundripaludum SV96] gi|307734787|gb|EFO05637.1| Ribonuclease H [Methylobacter tundripaludum SV96] Length = 203 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 86/186 (46%), Positives = 117/186 (62%), Gaps = 4/186 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DE GRG LAGPV AA+ILDP G+ DSK +S KR LY I +A+ SI+ Sbjct: 15 VAGVDEAGRGPLAGPVFAAAVILDPMRPIAGLADSKILSESKRNSLYIIIKEAALSWSIA 74 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 A ID NI +ATL A+ AVE L + P L+DG +P+ +P QA ++KGDS Sbjct: 75 QAGVDEIDGLNILQATLLAMQRAVEGLNIQPDEVLVDGNRLPKLSMPAQA--IVKGDSKV 132 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKV RD+LM H++YPD+ F H GY T +H I++ G +HR TF P Sbjct: 133 QAISAASILAKVERDKLMVDYHQQYPDFAFHVHKGYGTKQHLAEIEQFGFLAVHRRTFNP 192 Query: 204 LRNLSV 209 ++ + + Sbjct: 193 VKTMLI 198 >gi|292492827|ref|YP_003528266.1| ribonuclease H [Nitrosococcus halophilus Nc4] gi|291581422|gb|ADE15879.1| Ribonuclease H [Nitrosococcus halophilus Nc4] Length = 200 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 84/191 (43%), Positives = 117/191 (61%), Gaps = 3/191 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 RE W +AG+DEVGRG LAGPVV AA+ILDP + G+ DSK+++ RE L I + Sbjct: 9 REVQGW-IAGVDEVGRGPLAGPVVAAAVILDPGHPIAGVKDSKQLTPLARERLAALIQAQ 67 Query: 79 AII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A+ ++ A + I++ NI A+L A+ AV L P L+DG+ P C AV+ Sbjct: 68 AVAWALGRAEVEEIEQLNIFWASLLAMERAVAALSEAPSLVLVDGKHCPPA-ACPVRAVV 126 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD ++IAAASI+AKV RD M K+YP YGF +H GYPT H +++ GP IH Sbjct: 127 KGDQKVMAIAAASIVAKVARDAEMVALEKRYPGYGFGTHKGYPTRAHLAALEKLGPCPIH 186 Query: 198 RLTFRPLRNLS 208 R +FR ++ ++ Sbjct: 187 RRSFRAVKEIA 197 >gi|187478242|ref|YP_786266.1| ribonuclease HII [Bordetella avium 197N] gi|97182295|sp|Q2L146|RNH2_BORA1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|115422828|emb|CAJ49356.1| ribonuclease HII [Bordetella avium 197N] Length = 202 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 84/185 (45%), Positives = 112/185 (60%), Gaps = 2/185 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DE GRG LAG V AA+ILDP G+ DSK + ++RE L E+I + A+ I+ Sbjct: 17 VAGVDEAGRGPLAGAVYAAAVILDPQRPIDGLADSKVLKAERRERLAEQIKAQALSWCIA 76 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID NI +ATL A+ AVE L +P AL+DG P L C +IKGD++ Sbjct: 77 CASTDEIDSMNILRATLLAMQRAVEGLNQLPSLALVDGNQAPR-LRCAVQTIIKGDALVP 135 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AK RD ++ H YP YGFD H GY TA H ++E GP HR +F P+ Sbjct: 136 AISAASILAKTARDAELQRLHALYPQYGFDQHKGYGTALHLARLREYGPCPEHRRSFAPI 195 Query: 205 RNLSV 209 + + Sbjct: 196 KAFGI 200 >gi|229031467|ref|ZP_04187467.1| Ribonuclease [Bacillus cereus AH1271] gi|228729756|gb|EEL80736.1| Ribonuclease [Bacillus cereus AH1271] Length = 257 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 95/200 (47%), Positives = 132/200 (66%), Gaps = 6/200 (3%) Query: 12 FEL---EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 FE+ E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KR Sbjct: 57 FEMSRYEIALREKGLTLIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKR 116 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E Y++I + AI I + S Q ID+ NI++AT A+ AV NL P LID +P Sbjct: 117 ERFYDEIKAQAIVIGVGIVSPQIIDEINIYQATKQAMLDAVANLSCAPEYLLIDAMKLPT 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +P ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + Sbjct: 177 PIP--QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEA 234 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 I+ G HR +F P++++ Sbjct: 235 IEAHGVLEEHRKSFAPIKDM 254 >gi|329117652|ref|ZP_08246369.1| ribonuclease HII [Streptococcus parauberis NCFD 2020] gi|326908057|gb|EGE54971.1| ribonuclease HII [Streptococcus parauberis NCFD 2020] Length = 257 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 91/204 (44%), Positives = 128/204 (62%), Gaps = 12/204 (5%) Query: 14 LEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LE M+R EK+++ +AGIDEVGRG LAGPVV A +IL N G+NDSKKI K Sbjct: 55 LENMLRYEKSLYAQGYQAIAGIDEVGRGPLAGPVVAACVILPKNCKITGLNDSKKIPKSK 114 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR 123 E +Y + AI + I +++ ID+ NI++AT A+ A+ NL+ + P LID Sbjct: 115 HEMIYNLVIEKAIAVGIGLMTNEVIDEVNIYQATKLAMQAAINNLEGDNLTPDFLLIDAM 174 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + +P ++ +IKGD+ SLSIAAASI+AKVTRDRLM K YP Y F + GY T Sbjct: 175 KLENSIPQES--IIKGDANSLSIAAASIVAKVTRDRLMVDYDKAYPGYDFAKNAGYGTKN 232 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H + +++ G + IHR TF P++++ Sbjct: 233 HLEGLRKLGVTEIHRRTFEPVKSM 256 >gi|157692285|ref|YP_001486747.1| ribonuclease HII [Bacillus pumilus SAFR-032] gi|189043566|sp|A8FD70|RNH2_BACP2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|157681043|gb|ABV62187.1| ribonuclease HII [Bacillus pumilus SAFR-032] Length = 254 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 84/197 (42%), Positives = 120/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + + +AGIDE GRG LAGPVV AA+IL + + G+NDSK++S KKR Sbjct: 58 LQFENNAKAQGYTCIAGIDEAGRGPLAGPVVAAAVILKDDTVLLGLNDSKQLSEKKRLAY 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ I I ID+ NI++A+ A+ AVE L P LID ++P LP Sbjct: 118 YDLIQKEALDIGIGIVDAATIDEINIYEASRLAMVRAVEQLAHTPDYLLIDAMTLP--LP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S SIAA + IAKVTRD++M ++YP+Y F+ H GY T +H I+ Sbjct: 176 IHQENIIKGDAKSASIAAGACIAKVTRDQMMEEYGRQYPEYQFEKHKGYGTKEHLAAIQT 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHRL+F P++++ Sbjct: 236 HGAAPIHRLSFAPVKSV 252 >gi|262375455|ref|ZP_06068688.1| ribonuclease HII [Acinetobacter lwoffii SH145] gi|262309709|gb|EEY90839.1| ribonuclease HII [Acinetobacter lwoffii SH145] Length = 195 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 83/183 (45%), Positives = 114/183 (62%), Gaps = 1/183 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 +AG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A+ + Sbjct: 3 IAGVDEAGRGPLVGSVVAAAVILDPNNPIEGLNDSKKLTEKKREKLFIEIQEKALAWAIA 62 Query: 86 ASHQYI-DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + D+HNI +A+L A+ AVE L V P L+DG IP+ L AV+ GD++ Sbjct: 63 EASAAEIDEHNILQASLLAMRRAVEALPVQPEHVLVDGNKIPQGLAMSCDAVVGGDALHA 122 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +K+P +GF H GYPT H + I G HR +F P+ Sbjct: 123 EISAASILAKVTRDHQMIEMDQKHPQFGFAKHKGYPTKAHFEAIALHGVIDEHRRSFGPV 182 Query: 205 RNL 207 + + Sbjct: 183 KKV 185 >gi|190571269|ref|YP_001975627.1| ribonuclease HII [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018665|ref|ZP_03334473.1| ribonuclease HII [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|238056783|sp|B3CM59|RNH2_WOLPP RecName: Full=Ribonuclease HII; Short=RNase HII gi|190357541|emb|CAQ54978.1| ribonuclease HII [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995616|gb|EEB56256.1| ribonuclease HII [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 197 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 91/199 (45%), Positives = 123/199 (61%), Gaps = 6/199 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKR 68 P F LE + +AG+DEVGRG LAGPV+ AA+I D + + GINDSKK++ K R Sbjct: 4 PDFSLENTLSG----IIAGVDEVGRGPLAGPVISAAVIFTDRDTVIDGINDSKKLTPKCR 59 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + LYEKITS A I AS + I+ +NI +AT ++ A+ NL + L+DG PE Sbjct: 60 QVLYEKITSVAKFGIGMASVEEINSYNILQATKLSMKRALANLNLELDYVLVDGNQPPE- 118 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + Q +++ GDS+S+SIAAASI+AKVTRDRLM H K+P Y + + GY T +H I Sbjct: 119 VKWQVKSIVNGDSLSISIAAASIVAKVTRDRLMEELHNKHPQYNWYKNKGYGTKEHLSAI 178 Query: 189 KEKGPSCIHRLTFRPLRNL 207 G + HR F P+R L Sbjct: 179 GLHGITKHHRKNFAPIRIL 197 >gi|238754793|ref|ZP_04616144.1| Ribonuclease HII [Yersinia ruckeri ATCC 29473] gi|238706953|gb|EEP99319.1| Ribonuclease HII [Yersinia ruckeri ATCC 29473] Length = 187 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 86/183 (46%), Positives = 112/183 (61%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A+ S+ Sbjct: 2 IAGVDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEIIEKALSWSLG 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P LP + AV+KGDS Sbjct: 62 RAEPAEIDELNILHATMLAMQRAVAGLHIAPDYVLIDGNRCPA-LPMPSLAVVKGDSRVA 120 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M +P YGF H GYPTA H + + G + HR +F P+ Sbjct: 121 EISAASIVAKVTRDREMAELDSYFPGYGFAQHKGYPTALHLERLAALGATEHHRRSFSPV 180 Query: 205 RNL 207 +N+ Sbjct: 181 KNV 183 >gi|291519510|emb|CBK74731.1| Ribonuclease HII [Butyrivibrio fibrisolvens 16/4] Length = 254 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 86/177 (48%), Positives = 118/177 (66%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG LAGPVV A +IL + INDSKK++ KREELYE+I AI +SI Sbjct: 74 IGGIDEVGRGPLAGPVVTACVILPKDCDILYINDSKKLTAAKREELYEEIMEKAISVSIG 133 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 +AS + ID NI +AT +A+ A+E +V P+ L D +IP+ + +IKGD+ S+ Sbjct: 134 AASEERIDDINILQATYEAMRQAIEECKVEPQLLLNDAVTIPQ-VKIPQVPIIKGDAKSI 192 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SI AASIIAKVTRDR+M +P+Y F ++ GY +A+H + +K+ GP IHR +F Sbjct: 193 SIGAASIIAKVTRDRMMVEYDSIFPEYHFANNKGYGSAEHIEALKKYGPCPIHRRSF 249 >gi|83721502|ref|YP_442565.1| ribonuclease HII [Burkholderia thailandensis E264] gi|167581492|ref|ZP_02374366.1| ribonuclease HII [Burkholderia thailandensis TXDOH] gi|167619603|ref|ZP_02388234.1| ribonuclease HII [Burkholderia thailandensis Bt4] gi|257138774|ref|ZP_05587036.1| ribonuclease HII [Burkholderia thailandensis E264] gi|97182353|sp|Q2SWY4|RNH2_BURTA RecName: Full=Ribonuclease HII; Short=RNase HII gi|83655327|gb|ABC39390.1| ribonuclease HII [Burkholderia thailandensis E264] Length = 214 Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 122/182 (67%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 V G+DE GRG LAGPVV AA++LDP G++DSK +S KKRE L+++I + A+ ++ Sbjct: 28 VCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAHALAYCVA 87 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS + ID NI AT+ A+ AVE L V P A IDG P L ++ A++ GD++ Sbjct: 88 SASVEEIDTLNILHATMLAMKRAVEGLAVRPTLAKIDGNRCPM-LAIRSEAIVGGDALVP 146 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI+AASI+AKVTRDR++ H+++P YGFD+H GY T +H ++E GP HR +F P+ Sbjct: 147 SISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAPV 206 Query: 205 RN 206 R Sbjct: 207 RE 208 >gi|217967913|ref|YP_002353419.1| Ribonuclease H [Dictyoglomus turgidum DSM 6724] gi|217337012|gb|ACK42805.1| Ribonuclease H [Dictyoglomus turgidum DSM 6724] Length = 203 Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 91/194 (46%), Positives = 124/194 (63%), Gaps = 12/194 (6%) Query: 19 REKNMWP----VAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHKKREELYE 73 RE+ +W +AG+DE GRGALAGPV A+IL P ++IP +NDSK +S K+REEL+E Sbjct: 14 RERELWYYFRYIAGVDEAGRGALAGPVYAGAVILPPLSSIP--VNDSKLLSPKEREELFE 71 Query: 74 KITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPE-DLP 130 I A+ S A+ + I++ I KATL A+ A+E L++ P L+DG IP D+P Sbjct: 72 IIKKEALCWSFGYATVEEIEELGILKATLLAMRRAIEKLEIKPEYLLVDGNIPIPNMDIP 131 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + ++KGD LSIA+ASI+AKV RDR M+ K+YP YGF H GY T +H++ IK Sbjct: 132 QET--IVKGDRKCLSIASASIVAKVLRDRYMKELDKEYPGYGFSRHKGYATKEHREKIKS 189 Query: 191 KGPSCIHRLTFRPL 204 G IHR F+ L Sbjct: 190 LGSLLIHRKGFKLL 203 >gi|323497990|ref|ZP_08102999.1| ribonuclease HII [Vibrio sinaloensis DSM 21326] gi|323317035|gb|EGA70037.1| ribonuclease HII [Vibrio sinaloensis DSM 21326] Length = 205 Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 91/201 (45%), Positives = 120/201 (59%), Gaps = 12/201 (5%) Query: 17 MVREKNMWP----------VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 M +EK P +AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S K Sbjct: 1 MTKEKQPLPPFEYPQGYQRIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEK 60 Query: 67 KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KR L +I A+ S+ S ID+ NI +AT+ A+ A++ L V P ALIDG Sbjct: 61 KRLALLPEIKEKALAWSVGRCSPTEIDQLNILQATMVAMQRAIDGLAVKPDLALIDGNRC 120 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 PE L + AV+KGD I+AASIIAKV RD+ M K +P++GF H GYPT H Sbjct: 121 PE-LAMDSQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKLHPEFGFAKHKGYPTKAHF 179 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 + I++ G HR +F+P++ Sbjct: 180 EAIEKHGVIEQHRKSFKPVKK 200 >gi|251793243|ref|YP_003007971.1| ribonuclease HII [Aggregatibacter aphrophilus NJ8700] gi|247534638|gb|ACS97884.1| ribonuclease HII [Aggregatibacter aphrophilus NJ8700] Length = 195 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 84/182 (46%), Positives = 115/182 (63%), Gaps = 1/182 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L E I A+ ++ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRALLAEDIKQKALAWALG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI A++ A+ A+++L++ P L+DG IP +L A AV+KGD++ Sbjct: 73 RAEPHEIDELNILHASMLAMERAIKHLKIQPHFVLVDGNRIPPNLGMPAQAVVKGDALVA 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M KKYP Y F H GYPT H + + E G +R +F P+ Sbjct: 133 EISAASILAKVARDQEMMELDKKYPQYAFAKHKGYPTKLHLEKLAEFGVLPEYRRSFAPI 192 Query: 205 RN 206 +N Sbjct: 193 KN 194 >gi|123443471|ref|YP_001007444.1| ribonuclease HII [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166226668|sp|A1JP66|RNH2_YERE8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|122090432|emb|CAL13300.1| ribonuclease HII [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 198 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 85/183 (46%), Positives = 115/183 (62%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++IT A+ S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEITDKALSWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L + P LIDG P+ L + AV+KGDS Sbjct: 73 RAEPEEIDQLNILHATMLAMQRAVAGLHIAPDYVLIDGNRCPK-LAMPSLAVVKGDSRVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M ++P+YGF H GYPTA H + + G + HR +F P+ Sbjct: 132 EISAASILAKVTRDREMTELDLQFPEYGFAQHKGYPTAVHLEKLTTFGATEHHRRSFGPV 191 Query: 205 RNL 207 + + Sbjct: 192 KRV 194 >gi|312869151|ref|ZP_07729325.1| ribonuclease HII [Lactobacillus oris PB013-T2-3] gi|311095397|gb|EFQ53667.1| ribonuclease HII [Lactobacillus oris PB013-T2-3] Length = 255 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 83/191 (43%), Positives = 117/191 (61%), Gaps = 8/191 (4%) Query: 20 EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E+ +W VAG+DEVGRG LAGPVV A+ILDP+ G+ DSK+++ +RE+LY + Sbjct: 63 ERQLWQSGCRYVAGMDEVGRGPLAGPVVTCAVILDPDFDLIGVTDSKQLTRHEREQLYLR 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A+ +SI+ + ID+ NI+ AT DA+ AV NL P ++D +P D P Sbjct: 123 IVDEAVEVSIAVNDRKTIDRLNIYAATQDAMMRAVRNLNHRPDHLIVDAVPLPFDYP--Q 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGD S+S+AAASI+AK RD LM+ + YP YGF ++GY T +H + G Sbjct: 181 TTLIKGDQKSISVAAASIVAKEYRDHLMKDYDRVYPGYGFAENMGYGTKEHLAGLARLGA 240 Query: 194 SCIHRLTFRPL 204 IHR +F P+ Sbjct: 241 CPIHRRSFNPV 251 >gi|229086390|ref|ZP_04218566.1| Ribonuclease [Bacillus cereus Rock3-44] gi|228696906|gb|EEL49715.1| Ribonuclease [Bacillus cereus Rock3-44] Length = 255 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 91/194 (46%), Positives = 129/194 (66%), Gaps = 3/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y++ Sbjct: 63 EKALREKGLAYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYDE 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I + AI I + S Q ID+ NI++AT A+ A+ NL P LID +P +P Sbjct: 123 INAKAIAIGVGIISPQVIDEINIYQATKRAMLDAIANLSCTPEHLLIDAMKLPSPIP--Q 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +++KGD+ S+SI+AASIIAKVTRD +M+ K++P+YGF+ H+GY T +H Q I+ G Sbjct: 181 TSIVKGDTKSISISAASIIAKVTRDCMMKELGKEHPEYGFEQHMGYGTKQHLQAIETYGV 240 Query: 194 SCIHRLTFRPLRNL 207 HR TF P++++ Sbjct: 241 LEEHRKTFAPIKDM 254 >gi|308173568|ref|YP_003920273.1| ribonuclease HII [Bacillus amyloliquefaciens DSM 7] gi|307606432|emb|CBI42803.1| ribonuclease HII [Bacillus amyloliquefaciens DSM 7] gi|328553499|gb|AEB23991.1| ribonuclease HII [Bacillus amyloliquefaciens TA208] gi|328911709|gb|AEB63305.1| ribonuclease HII [Bacillus amyloliquefaciens LL3] Length = 255 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 86/193 (44%), Positives = 117/193 (60%), Gaps = 3/193 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + +K +AG+DE GRG LAGPVV A+IL G+ DSKK+S KK EE Y + Sbjct: 63 ERLSYKKGFRLIAGVDEAGRGPLAGPVVAGAVILPAQCEILGLTDSKKLSEKKLEEYYTR 122 Query: 75 ITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 IT +A I + ID+ NI++A A+ AV L P L D ++P D+P + Sbjct: 123 ITEEAAAIGVGIVHADVIDRINIYEAARLAMVKAVNALAETPDYLLADAMTLPLDIPQSS 182 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 VIKGD+ S+SIAA + IAKVTRDRLM K YP YGF+ + GY T +H + ++ GP Sbjct: 183 --VIKGDAKSVSIAAGACIAKVTRDRLMAEYAKTYPMYGFEKNKGYGTKEHLEALQAYGP 240 Query: 194 SCIHRLTFRPLRN 206 + IHR TF P+++ Sbjct: 241 TNIHRKTFAPVQS 253 >gi|260893261|ref|YP_003239358.1| Ribonuclease H [Ammonifex degensii KC4] gi|260865402|gb|ACX52508.1| Ribonuclease H [Ammonifex degensii KC4] Length = 204 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 87/184 (47%), Positives = 115/184 (62%), Gaps = 4/184 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DE GRG LAGPVV AA+I P+ ++P + DSK +S KKR EL +I A +I Sbjct: 16 VAGVDEAGRGPLAGPVVAAAVIFPPSLDLPL-LKDSKLLSPKKRWELACRIVELAEDWAI 74 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 S ID I +AT A+Y A+ +L++ P LIDG S P LP ++KGDS Sbjct: 75 GIGSVAEIDLLGIREATFRAMYRALCSLRLPPDMVLIDGNSSPP-LPWPHLTIVKGDSRV 133 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 S+AAASI+AKVTRDRLM H +P Y F H GYPT +H++++ GP +HR TF P Sbjct: 134 ASVAAASILAKVTRDRLMEDLHPLFPQYNFKRHKGYPTKEHKELLARYGPVSLHRRTFAP 193 Query: 204 LRNL 207 +R+ Sbjct: 194 VRHF 197 >gi|153814000|ref|ZP_01966668.1| hypothetical protein RUMTOR_00207 [Ruminococcus torques ATCC 27756] gi|317502410|ref|ZP_07960575.1| ribonuclease [Lachnospiraceae bacterium 8_1_57FAA] gi|331088003|ref|ZP_08336926.1| hypothetical protein HMPREF1025_00509 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848396|gb|EDK25314.1| hypothetical protein RUMTOR_00207 [Ruminococcus torques ATCC 27756] gi|316896220|gb|EFV18326.1| ribonuclease [Lachnospiraceae bacterium 8_1_57FAA] gi|330409314|gb|EGG88763.1| hypothetical protein HMPREF1025_00509 [Lachnospiraceae bacterium 3_1_46FAA] Length = 255 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 85/182 (46%), Positives = 116/182 (63%), Gaps = 2/182 (1%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 K+ + GIDE GRG LAGPVV A+IL + +NDSKK+S +RE LY++I A+ Sbjct: 67 KDAEMICGIDEAGRGPLAGPVVAGAVILPKDCEILYLNDSKKLSASRREALYDEIMEKAV 126 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 + + AS ID+ NI +AT +A+ AVE L V+P L D +IPE +P + ++KG Sbjct: 127 AVGVGMASPARIDEINILQATYEAMRKAVEQLSVVPDLLLNDAVTIPE-MPYRQVPIVKG 185 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D+ S+SIAAAS+IAKVTRDRLM K P+YGF + GY + H + +K G S IHR Sbjct: 186 DAKSVSIAAASVIAKVTRDRLMMQYDKILPEYGFAQNKGYGSQSHIEALKRVGASPIHRR 245 Query: 200 TF 201 +F Sbjct: 246 SF 247 >gi|320546752|ref|ZP_08041063.1| ribonuclease HII [Streptococcus equinus ATCC 9812] gi|320448631|gb|EFW89363.1| ribonuclease HII [Streptococcus equinus ATCC 9812] Length = 259 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 127/206 (61%), Gaps = 12/206 (5%) Query: 12 FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 LE M+R EK ++ + GIDEVGRG LAGPVV A +IL N +NDSKKI Sbjct: 52 LRLENMLRYEKELYKQGYQAIGGIDEVGRGPLAGPVVTACVILPKNCKIKHLNDSKKIPK 111 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALID 121 K EE+YE++ + A+ + I + ID NI++AT + A+E L+ P LID Sbjct: 112 KHHEEIYEEVLARALGVGIGVIDNNVIDDINIYEATKVGMLQAIEQLKGEVTRPDYLLID 171 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + D+P ++ IKGD+ SLSIAAASI+AKVTRDR+M K+YP Y F+ +VGY T Sbjct: 172 AMHLDTDIPQESL--IKGDANSLSIAAASIVAKVTRDRMMADYAKEYPGYAFEKNVGYGT 229 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207 H + +K+ G + IHR TF P++++ Sbjct: 230 KDHLEGLKKLGITPIHRKTFEPIKSM 255 >gi|84623510|ref|YP_450882.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|97189477|sp|Q2P4B9|RNH2_XANOM RecName: Full=Ribonuclease HII; Short=RNase HII gi|84367450|dbj|BAE68608.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 246 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 83/182 (45%), Positives = 119/182 (65%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII-SI 83 VAG+DE GRG LAGPV VAA++ DPN G++DSK+++ ++RE+LY +I A+ S+ Sbjct: 37 VAGVDEAGRGPLAGPVAVAAVVFDPNKPRINGLDDSKQLTAERREQLYARIVDRALAWSV 96 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD++ Sbjct: 97 VLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALD 156 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I AASI+AKVTRDRLM H ++P+Y FD H GY T H ++ GP HR +F P Sbjct: 157 RAIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYSTPMHLAALQTHGPCPQHRRSFAP 216 Query: 204 LR 205 +R Sbjct: 217 VR 218 >gi|226325139|ref|ZP_03800657.1| hypothetical protein COPCOM_02931 [Coprococcus comes ATCC 27758] gi|225206487|gb|EEG88841.1| hypothetical protein COPCOM_02931 [Coprococcus comes ATCC 27758] Length = 253 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 88/177 (49%), Positives = 117/177 (66%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG LAGPVV A+IL INDSKK+S KR+ELY++I A+ + + Sbjct: 73 ICGIDEVGRGPLAGPVVAGAVILPKECEILYINDSKKLSAAKRDELYDEIMDKAVAVGLG 132 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID+ NI +AT +A+ A+ NL+V P L D +IPE + Q +IKGD+ S+ Sbjct: 133 MASPARIDEINILQATYEAMRQAIGNLKVEPDLLLNDAVTIPEVVIPQ-VPIIKGDAKSV 191 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASI+AKVTRDRLM K P YGF S+ GY +A+H + ++ GP+ IHR +F Sbjct: 192 SIAAASIVAKVTRDRLMEEYDKVLPGYGFASNKGYGSAEHIKALQTLGPTPIHRRSF 248 >gi|88812391|ref|ZP_01127641.1| Ribonuclease H [Nitrococcus mobilis Nb-231] gi|88790398|gb|EAR21515.1| Ribonuclease H [Nitrococcus mobilis Nb-231] Length = 218 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 86/185 (46%), Positives = 116/185 (62%), Gaps = 4/185 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 W AGIDE GRG LAGPV+ AA+IL P I GI DSK++S +R EL I + A+ + Sbjct: 13 W-TAGIDEAGRGPLAGPVLAAAVILPPAPI-AGIADSKRLSAARRSELATIIRNRAVGWA 70 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I A + ID+ NI +A+L A+ AV L P AL+DGR P LPC+ A++ GD+ Sbjct: 71 IGRAEVEEIDRLNILQASLLAMQRAVAVLTPKPSLALVDGRDKPR-LPCRVEAIVGGDAS 129 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 L+I AASI+AKV RD M + ++YP YG H GY T +H ++ GP+ IHR +F+ Sbjct: 130 VLAIGAASILAKVARDAEMIMLEQRYPGYGLARHKGYGTREHLAALRRLGPAPIHRRSFK 189 Query: 203 PLRNL 207 P+R L Sbjct: 190 PVRTL 194 >gi|172057903|ref|YP_001814363.1| ribonuclease H [Exiguobacterium sibiricum 255-15] gi|171990424|gb|ACB61346.1| Ribonuclease H [Exiguobacterium sibiricum 255-15] Length = 250 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 87/197 (44%), Positives = 121/197 (61%), Gaps = 6/197 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 ER FE R + +AG+DEVGRG LAGPVV AA+IL G+ DSK++S K+ Sbjct: 56 ERSLFE--DRYRAQGHQRIAGVDEVGRGPLAGPVVAAAVILPAGFYHPGLTDSKQMSKKQ 113 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 R Y+ I A ++I + ID+ NI++A+ A+ AV Q+ P + L+D ++ Sbjct: 114 RSAAYQHIQEVAEVAIGIIEPEEIDRINIYQASKQAMQQAV--AQLTPDALLVDAMTLDV 171 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 DLP ++ IKGD+ S+SIAAAS+IAK TRD +M YP+YGFD H GY TA+H Q Sbjct: 172 DLPQESL--IKGDARSVSIAAASVIAKETRDTMMEQYAVLYPEYGFDQHAGYGTAQHLQA 229 Query: 188 IKEKGPSCIHRLTFRPL 204 + G + IHR TF+P+ Sbjct: 230 LDRVGVTPIHRKTFKPV 246 >gi|319744987|gb|EFV97315.1| ribonuclease HII [Streptococcus agalactiae ATCC 13813] Length = 254 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 91/210 (43%), Positives = 127/210 (60%), Gaps = 9/210 (4%) Query: 4 NSIPERPHFELEAMVREKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN 58 + + E E + +V EK ++ +AGIDEVGRG LAGPVV AA+IL PN +N Sbjct: 47 SDLDEEARLE-QMLVYEKKLYIEHINLIAGIDEVGRGPLAGPVVAAAVILPPNCKIKHLN 105 Query: 59 DSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117 DSKKI KK +E+Y+ I A+ + I Q ID NI++AT A+ AV +L V P Sbjct: 106 DSKKIPKKKHQEIYQNILDQALAVGIGIQDSQCIDDINIYEATKHAMIDAVSHLSVAPEH 165 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 LID + DL +IKGD+ SLSIAAASI+AKVTRD++M YP Y F + Sbjct: 166 LLIDAMVL--DLSIPQTKIIKGDANSLSIAAASIVAKVTRDKIMSDYDSTYPGYAFSKNA 223 Query: 178 GYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 GY T +H + +++ G + IHR +F P++++ Sbjct: 224 GYGTKEHLEGLQKYGITPIHRKSFEPIKSM 253 >gi|229174503|ref|ZP_04302035.1| Ribonuclease [Bacillus cereus MM3] gi|228609063|gb|EEK66353.1| Ribonuclease [Bacillus cereus MM3] Length = 257 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 96/199 (48%), Positives = 130/199 (65%), Gaps = 6/199 (3%) Query: 12 FEL---EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 FE+ E +REK + +AGIDEVGRG LAGPVV AA++L N G+NDSKK+S KR Sbjct: 57 FEMSKYEIALREKGLTLIAGIDEVGRGPLAGPVVTAAVVLPENFYIPGLNDSKKLSEAKR 116 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E Y++I + AI I + S Q ID+ NI++AT A+ AV NL P LID +P Sbjct: 117 ERFYDEIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCAPEHLLIDAMKLPT 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +P ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H Sbjct: 177 PIP--QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLGA 234 Query: 188 IKEKGPSCIHRLTFRPLRN 206 I+ G HR +F P+++ Sbjct: 235 IEAHGVLEEHRKSFAPIKD 253 >gi|218898990|ref|YP_002447401.1| ribonuclease HII [Bacillus cereus G9842] gi|228902340|ref|ZP_04066497.1| Ribonuclease [Bacillus thuringiensis IBL 4222] gi|228909662|ref|ZP_04073485.1| Ribonuclease [Bacillus thuringiensis IBL 200] gi|228966782|ref|ZP_04127826.1| Ribonuclease [Bacillus thuringiensis serovar sotto str. T04001] gi|226736813|sp|B7IUJ6|RNH2_BACC2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|218543986|gb|ACK96380.1| ribonuclease HII [Bacillus cereus G9842] gi|228792881|gb|EEM40439.1| Ribonuclease [Bacillus thuringiensis serovar sotto str. T04001] gi|228849951|gb|EEM94782.1| Ribonuclease [Bacillus thuringiensis IBL 200] gi|228857309|gb|EEN01812.1| Ribonuclease [Bacillus thuringiensis IBL 4222] Length = 257 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 95/200 (47%), Positives = 132/200 (66%), Gaps = 6/200 (3%) Query: 12 FEL---EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 FE+ E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KR Sbjct: 57 FEMSKYENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKR 116 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E Y++I AI I + S Q ID NI++AT A+ AV NL P+ LID +P Sbjct: 117 ERFYDEIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +P ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP+YGF+ H+GY T +H + Sbjct: 177 PIP--QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEA 234 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 I+ G HR +F P++++ Sbjct: 235 IEVHGVLDEHRKSFAPIKDM 254 >gi|331005976|ref|ZP_08329321.1| Ribonuclease HII [gamma proteobacterium IMCC1989] gi|330420221|gb|EGG94542.1| Ribonuclease HII [gamma proteobacterium IMCC1989] Length = 202 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 86/182 (47%), Positives = 117/182 (64%), Gaps = 2/182 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DEVGRG LAG VV AA+IL PN G+NDSKK+S KKR+ L++ I A+ SI+ Sbjct: 14 AGVDEVGRGPLAGDVVTAAVILGPNKPIEGLNDSKKLSEKKRDALFDIIKERALSWSIAR 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI +A+L A+ AV+ L + P +DG +P A VIKGDS + Sbjct: 74 CSVEDIDQINILQASLLAMKKAVDGLAITPEHVWVDGNKMPR-WNYTAETVIKGDSRVPA 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 IAAASI+AKVTRDR M ++YP YGF +H GYPT H ++ G + IHR ++ P++ Sbjct: 133 IAAASILAKVTRDREMVAYEEQYPGYGFAAHKGYPTKVHIDALQRLGITPIHRRSYAPVK 192 Query: 206 NL 207 + Sbjct: 193 KI 194 >gi|113868020|ref|YP_726509.1| ribonuclease HII [Ralstonia eutropha H16] gi|123133958|sp|Q0KA30|RNH2_RALEH RecName: Full=Ribonuclease HII; Short=RNase HII gi|113526796|emb|CAJ93141.1| Ribonuclease HII [Ralstonia eutropha H16] Length = 238 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 82/185 (44%), Positives = 118/185 (63%), Gaps = 5/185 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + G+DE GRG LAGPV AA+ILDP G+ DSK ++ KRE+LYEKI A+ I+ Sbjct: 25 LCGVDEAGRGPLAGPVYAAAVILDPKRPIRGLADSKILTAAKREQLYEKICERALGWHIA 84 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 A+ + ID NI A++ A+ AV+ L ++P +DG P +P A+++GD+ Sbjct: 85 FATVEEIDTLNILHASMLAMQRAVQGLAASGIVPDLVQVDGNRCPR-VPFPVEAIVQGDA 143 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + +I+AASI+AKV RDR +R+ H++YP YGFDSHVGY T +H + E G + HR +F Sbjct: 144 LVKAISAASILAKVARDRELRVLHERYPQYGFDSHVGYGTPQHLAALAEFGATPHHRRSF 203 Query: 202 RPLRN 206 P+R Sbjct: 204 APVRE 208 >gi|260662114|ref|ZP_05863010.1| ribonuclease HII [Lactobacillus fermentum 28-3-CHN] gi|260553497|gb|EEX26389.1| ribonuclease HII [Lactobacillus fermentum 28-3-CHN] Length = 256 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 83/191 (43%), Positives = 119/191 (62%), Gaps = 8/191 (4%) Query: 20 EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +W VAGIDEVGRG LAGPVV A++LD G+ DSK++S +RE+LY + Sbjct: 63 ENQLWQAGHQYVAGIDEVGRGPLAGPVVTCAVVLDSQFDLVGVTDSKQLSRHEREQLYLR 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A+ +S++ + Q ID+ NI+ AT A+ +V+ L P ++D ++P D+P Sbjct: 123 ILDEAVEVSLAVSPAQEIDRLNIYAATQTAMIRSVKALHHQPSHLIVD--AVPLDIPVPQ 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +I+GD S+S+AAASI+AK RD LM I + YP YGF ++GY TA H +++ G Sbjct: 181 TTLIRGDQKSISVAAASIVAKEYRDHLMAIYDRLYPGYGFKDNMGYGTAAHLAGLEQLGA 240 Query: 194 SCIHRLTFRPL 204 IHR TFRP+ Sbjct: 241 CPIHRRTFRPV 251 >gi|154483562|ref|ZP_02026010.1| hypothetical protein EUBVEN_01266 [Eubacterium ventriosum ATCC 27560] gi|149735472|gb|EDM51358.1| hypothetical protein EUBVEN_01266 [Eubacterium ventriosum ATCC 27560] Length = 251 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 88/177 (49%), Positives = 117/177 (66%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + GIDEVGRG LAGPVV A+IL N INDSKK+S KKREELYE I A+ + ++ Sbjct: 71 ICGIDEVGRGPLAGPVVAGAVILPKNCDILYINDSKKLSAKKREELYEVIMEKAVCAKTA 130 Query: 86 A-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S + ID+ NI +AT +A+ A+ L+ P L D +IP +P + ++IKGD+ S+ Sbjct: 131 VVSPKVIDEINILQATYEAMRQAISMLEPQPTLLLNDAVNIP-GVPMKQVSIIKGDAKSI 189 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SI AASIIAKVTRD +M K YP+Y F S+ GY +AKH + +K+ GP IHR +F Sbjct: 190 SIGAASIIAKVTRDAMMVEYDKIYPEYDFASNKGYGSAKHIEALKKYGPCPIHRKSF 246 >gi|22537172|ref|NP_688023.1| ribonuclease HII [Streptococcus agalactiae 2603V/R] gi|25011101|ref|NP_735496.1| ribonuclease HII [Streptococcus agalactiae NEM316] gi|76798272|ref|ZP_00780520.1| ribonuclease HII [Streptococcus agalactiae 18RS21] gi|77410447|ref|ZP_00786808.1| ribonuclease HII [Streptococcus agalactiae CJB111] gi|77413753|ref|ZP_00789934.1| ribonuclease HII [Streptococcus agalactiae 515] gi|39932400|sp|Q8DZT5|RNH2_STRA5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|39932402|sp|Q8E5I2|RNH2_STRA3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|22534036|gb|AAM99895.1|AE014238_8 ribonuclease HII [Streptococcus agalactiae 2603V/R] gi|23095500|emb|CAD46706.1| Unknown [Streptococcus agalactiae NEM316] gi|76586383|gb|EAO62893.1| ribonuclease HII [Streptococcus agalactiae 18RS21] gi|77160182|gb|EAO71312.1| ribonuclease HII [Streptococcus agalactiae 515] gi|77163395|gb|EAO74345.1| ribonuclease HII [Streptococcus agalactiae CJB111] Length = 253 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 91/210 (43%), Positives = 127/210 (60%), Gaps = 9/210 (4%) Query: 4 NSIPERPHFELEAMVREKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN 58 + + E E + +V EK ++ +AGIDEVGRG LAGPVV AA+IL PN +N Sbjct: 46 SDLDEEARLE-QMLVYEKKLYIEHINLIAGIDEVGRGPLAGPVVAAAVILPPNCKIKHLN 104 Query: 59 DSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117 DSKKI KK +E+Y+ I A+ + I Q ID NI++AT A+ AV +L V P Sbjct: 105 DSKKIPKKKHQEIYQNILDQALAVGIGIQDSQCIDDINIYEATKHAMIDAVSHLSVAPEH 164 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 LID + DL +IKGD+ SLSIAAASI+AKVTRD++M YP Y F + Sbjct: 165 LLIDAMVL--DLSIPQTKIIKGDANSLSIAAASIVAKVTRDKIMSDYDSTYPGYAFSKNA 222 Query: 178 GYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 GY T +H + +++ G + IHR +F P++++ Sbjct: 223 GYGTKEHLEGLQKYGITPIHRKSFEPIKSM 252 >gi|124262697|ref|YP_001023167.1| RNase HII [Methylibium petroleiphilum PM1] gi|189043523|sp|A2SMZ3|RNH21_METPP RecName: Full=Ribonuclease HII 1; Short=RNase HII 1 gi|124261943|gb|ABM96932.1| RNase HII [Methylibium petroleiphilum PM1] Length = 198 Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 85/180 (47%), Positives = 115/180 (63%), Gaps = 2/180 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS-SAIISIS 84 AG+DE GRG LAGPVV AA+ILDP+ G+NDSK++S K+R+ L++ I +A I+ Sbjct: 9 TAGVDEAGRGPLAGPVVAAAVILDPSRPIDGLNDSKQLSAKRRDRLFDLIIERAAAYCIA 68 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID+ NI +AT+ A+ A+ L V P+ LIDG P LP ++ A++KGD+ Sbjct: 69 EASVEEIDRLNILQATMLAMQRAIAGLSVTPQLVLIDGNRSPL-LPMRSEAIVKGDARVT 127 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI AASI+AKV RDRL H+ +P YGF H GY TA H + + G HR TF P+ Sbjct: 128 SIGAASILAKVHRDRLCAKLHETFPLYGFAVHKGYGTADHLAALVQHGACPEHRRTFSPV 187 >gi|229162773|ref|ZP_04290730.1| Ribonuclease HII [Bacillus cereus R309803] gi|228620655|gb|EEK77524.1| Ribonuclease HII [Bacillus cereus R309803] Length = 257 Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 96/205 (46%), Positives = 132/205 (64%), Gaps = 7/205 (3%) Query: 8 ERPHF----ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 ER F + E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+ Sbjct: 52 EREKFLEMSKYENALREKGLAYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKL 111 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S KRE Y++I + AI I + S Q ID+ NI++AT A+ AV NL P+ LID Sbjct: 112 SEAKRERFYDEIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDA 171 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 +P +P ++IKGD+ S+SI+AASIIAKVTRDR+M+ KYP YGF+ H+GY T Sbjct: 172 MKLPTPIP--QTSIIKGDAKSISISAASIIAKVTRDRMMKELGGKYPAYGFEQHMGYGTK 229 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 +H + I G HR +F P++++ Sbjct: 230 QHLEAIAAHGVLEEHRKSFAPIKDM 254 >gi|222151079|ref|YP_002560233.1| ribonuclease HII [Macrococcus caseolyticus JCSC5402] gi|254807980|sp|B9EBC6|RNH2_MACCJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|222120202|dbj|BAH17537.1| ribonuclease HII [Macrococcus caseolyticus JCSC5402] Length = 264 Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 85/198 (42%), Positives = 126/198 (63%), Gaps = 5/198 (2%) Query: 13 ELEAMV---REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 E E M+ R N V GIDEVGRG LAGPV+ A+IL+ + G+NDSK++S KR Sbjct: 55 EYEQMLEYERRYNGKVVCGIDEVGRGPLAGPVIACAVILNDGHHYIGLNDSKQLSKHKRA 114 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY+ +T S +I +AS + IDK NI++AT A++ A++ L V P LID ++ L Sbjct: 115 SLYDALTQSVTYAIGAASVEEIDKFNIYEATKLAMHRAIDKLPVKPDVLLIDAMNLNTGL 174 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + ++IKGD+ S+SIAAAS+IAKV RD LM H+++P Y F+ + GY T +H + Sbjct: 175 IEE--SIIKGDAKSVSIAAASVIAKVYRDHLMEEIHEEFPYYDFNRNAGYGTKRHLDGLM 232 Query: 190 EKGPSCIHRLTFRPLRNL 207 + G + HR +F P++++ Sbjct: 233 QYGITAHHRKSFEPIKSM 250 >gi|147678043|ref|YP_001212258.1| ribonuclease HII [Pelotomaculum thermopropionicum SI] gi|189043637|sp|A5D1I3|RNH2_PELTS RecName: Full=Ribonuclease HII; Short=RNase HII gi|146274140|dbj|BAF59889.1| ribonuclease HII [Pelotomaculum thermopropionicum SI] Length = 266 Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 86/186 (46%), Positives = 116/186 (62%), Gaps = 6/186 (3%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKREELYEKITSSAII- 81 PVAG+DE GRG LAGPVV AA+IL P + G+NDSKK++ KR EL +I A+ Sbjct: 74 PVAGVDEAGRGPLAGPVVAAAVILPPVADLALAGLNDSKKLNPSKRAELAARIKKVALAW 133 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGD 140 S ++ + I NIH A+L A+ AV L++ P L+DG I +LP A+ GD Sbjct: 134 SAGISTVEEIFNENIHAASLTAMRRAVLKLKIRPAYLLVDGYRISRLELP--QLALTGGD 191 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 +S S+AAASI+AKV RDRLM H +YP YGF+ H GY T +H ++ GP +HR Sbjct: 192 GLSASVAAASILAKVLRDRLMDFYHVQYPQYGFNRHKGYATPEHLAALERYGPCPLHRAG 251 Query: 201 FRPLRN 206 +RP++N Sbjct: 252 YRPVKN 257 >gi|189485020|ref|YP_001955961.1| ribonuclease HII [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|254808005|sp|B1GZ18|RNH2_UNCTG RecName: Full=Ribonuclease HII; Short=RNase HII gi|170286979|dbj|BAG13500.1| ribonuclease HII [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 210 Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 87/198 (43%), Positives = 123/198 (62%), Gaps = 3/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREE 70 F + K +PVAGIDE GRG LAGPVV A +IL ++ IP+ +NDSK++S KKRE Sbjct: 6 FSFDRNFYNKGFYPVAGIDEAGRGPLAGPVVAAVVILPKDSAIPY-LNDSKQLSEKKREI 64 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+E I +A+ ++ +++ ID+ NI +AT A+ AV L+ P LIDG L Sbjct: 65 LFEIIKETALDYAVELVNNEIIDEINILQATFLAMSRAVLKLKTQPDLYLIDGNRKVHGL 124 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++ GD+ S IAAASI+AKV+RD++M K+YP Y F+ H GY T KH + +K Sbjct: 125 SFNQETIVGGDAKSACIAAASILAKVSRDKMMLEYAKQYPVYEFEKHKGYGTKKHIEALK 184 Query: 190 EKGPSCIHRLTFRPLRNL 207 + G IHRLTF P+ ++ Sbjct: 185 KHGICPIHRLTFSPVNDI 202 >gi|302771367|ref|XP_002969102.1| ribonuclease H11 [Selaginella moellendorffii] gi|300163607|gb|EFJ30218.1| ribonuclease H11 [Selaginella moellendorffii] Length = 195 Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 94/190 (49%), Positives = 121/190 (63%), Gaps = 9/190 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII--S 82 V G+DE GRG LAGPVV AA I+ P ++ GI+DSKK++ +KRE+LY +ITS+ + S Sbjct: 3 VIGVDEAGRGPLAGPVVAAACII-PEDVDIQGIDDSKKLTAEKREQLYSQITSTPGVRFS 61 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS----ALIDGRSIPEDLPCQ-AFAVI 137 I ID+ NI +AT++A+ VE L R LIDG IP L + A +V+ Sbjct: 62 ICVVDAPRIDEINILQATMEAMETCVEELTGNGRDHPPYILIDGNRIPGGLSGKHARSVV 121 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD+ S IAAASI+AKVTRDRLM K++P YGF H GY TA H + + GP IH Sbjct: 122 KGDAESHVIAAASILAKVTRDRLMEDYDKRWPLYGFKDHKGYGTASHTAALLKHGPCDIH 181 Query: 198 RLTFRPLRNL 207 R +F PLRNL Sbjct: 182 RRSFAPLRNL 191 >gi|301300759|ref|ZP_07206943.1| ribonuclease HII [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851609|gb|EFK79309.1| ribonuclease HII [Lactobacillus salivarius ACS-116-V-Col5a] Length = 255 Score = 151 bits (381), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 86/194 (44%), Positives = 132/194 (68%), Gaps = 8/194 (4%) Query: 20 EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E+++W +AG+DEVGRG LAGPVV AA+IL + F +NDSK++S KKREELY+K Sbjct: 61 ERDLWNKGIEYIAGVDEVGRGPLAGPVVTAAVILPHDFDIFEVNDSKQLSEKKREELYKK 120 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A+ +S+ + + ID+ NI++AT A+ A+E+L + P+ ++D +I +P Sbjct: 121 ILEKAVAVSVGLSDNNLIDEVNIYEATRLAMKQAIESLNITPQKIIVDAMTIDTKIP--Q 178 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGD+ S S+AAASI+AKVTRD LM+ + YP+YGF+ + GY T +H + ++ KG Sbjct: 179 LRLIKGDAKSASVAAASIVAKVTRDHLMQFYARIYPEYGFEKNDGYGTKQHLEGLENKGV 238 Query: 194 SCIHRLTFRPLRNL 207 + IHR +F P++ + Sbjct: 239 TPIHRQSFEPVKKI 252 >gi|161504651|ref|YP_001571763.1| ribonuclease HII [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189043654|sp|A9MPH8|RNH2_SALAR RecName: Full=Ribonuclease HII; Short=RNase HII gi|160865998|gb|ABX22621.1| hypothetical protein SARI_02772 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 198 Score = 151 bits (381), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 86/182 (47%), Positives = 111/182 (60%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LY++I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALYDEIKEKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P LP + AV+KGDS Sbjct: 72 RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPA-LPVPSMAVVKGDSRVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H + + + G + HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMAALDIIFPQYGFAQHKGYPTAFHLEKLAQYGATAHHRRSFAPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|33152162|ref|NP_873515.1| ribonuclease HII [Haemophilus ducreyi 35000HP] gi|39932311|sp|Q7VMF2|RNH2_HAEDU RecName: Full=Ribonuclease HII; Short=RNase HII gi|33148384|gb|AAP95904.1| ribonuclease HII [Haemophilus ducreyi 35000HP] Length = 197 Score = 151 bits (381), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 82/184 (44%), Positives = 116/184 (63%), Gaps = 4/184 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S KKR L +I A+ S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPQQPILGLADSKKLSEKKRILLATEIKQKALCWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ A+ L + P L+DG IP ++P QA ++KGDS+ Sbjct: 73 RAEAEEIDQLNILHATMLAMQRAINALTIQPDFVLVDGNRIPSLNMPAQA--IVKGDSLV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RD M+I +++P+YGF H GYPT H + + + G + HR +F P Sbjct: 131 AEISAASILAKVARDHEMQILDQQFPEYGFAQHKGYPTKLHIEKLAQFGATPFHRKSFAP 190 Query: 204 LRNL 207 +R + Sbjct: 191 VRKI 194 >gi|315648159|ref|ZP_07901260.1| ribonuclease HII [Paenibacillus vortex V453] gi|315276805|gb|EFU40148.1| ribonuclease HII [Paenibacillus vortex V453] Length = 205 Score = 151 bits (381), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 89/199 (44%), Positives = 125/199 (62%), Gaps = 10/199 (5%) Query: 17 MVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 ++ E++ W +AGIDEVGRG L G VV AA+IL + GI+DSKK+S KKRE LY Sbjct: 5 LMYERDYWNHYIHIAGIDEVGRGCLFGDVVAAAVILPEGLVIEGIDDSKKLSAKKRETLY 64 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I A+ + + + ID+ NI +A A+ AVE L V P+ L+D + D+P Sbjct: 65 DLIMEDALAVGVGLVDAETIDRINIKQAARLAMKMAVEQLAVTPQFLLVDAEKVDCDIPQ 124 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLM-RIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + A+IKGD+ S SIAAASIIAKVTRDRL R +YP+YG H GY T H++ ++ Sbjct: 125 R--AIIKGDANSQSIAAASIIAKVTRDRLCEREWEARYPEYGIAVHKGYATKFHREQLQL 182 Query: 191 KGPSCIHRLTFRPLRNLSV 209 GP+ +HR +F L+N+ + Sbjct: 183 HGPTSMHRRSF--LKNMEI 199 >gi|313889379|ref|ZP_07823027.1| ribonuclease HII [Streptococcus pseudoporcinus SPIN 20026] gi|313122211|gb|EFR45302.1| ribonuclease HII [Streptococcus pseudoporcinus SPIN 20026] Length = 257 Score = 151 bits (381), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 90/200 (45%), Positives = 122/200 (61%), Gaps = 6/200 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + ++ +AGIDEVGRG LAGPVV A ++L N G+NDSKKI K L Sbjct: 59 FRYERDIYQQGYHCIAGIDEVGRGPLAGPVVAACVVLPKNCKIKGLNDSKKIPKSKHITL 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPE 127 +E+I A+ I I ++ ID NI++AT A+ A+ NL +VIP LID ++ Sbjct: 119 FEQIKKQAMGIGIGIVDNEMIDTINIYQATKLAMLEAINNLKKVEVIPDYLLIDAMTL-- 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D+ +IKGD+ SLSIAAASIIAKVTRD+LM + YP Y F + GY T KH Q Sbjct: 177 DISIPQMPLIKGDANSLSIAAASIIAKVTRDQLMMSYDQTYPGYDFAQNAGYGTKKHLQG 236 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 +K G + IHR +F P++++ Sbjct: 237 LKNYGVTPIHRKSFEPIKSM 256 >gi|317131439|ref|YP_004090753.1| Ribonuclease H [Ethanoligenens harbinense YUAN-3] gi|315469418|gb|ADU26022.1| Ribonuclease H [Ethanoligenens harbinense YUAN-3] Length = 207 Score = 151 bits (381), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 86/188 (45%), Positives = 117/188 (62%), Gaps = 4/188 (2%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + V G+DE GRG LAGPV AA+IL + G+NDSKK+S K+RE L+++I A+ Sbjct: 13 QGFGTVCGVDEAGRGPLAGPVFAAAVILPRGVMIEGVNDSKKLSEKRREILFDRIRDQAL 72 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 +++SA + I ++NI A+L A+ AV +LQ+ ++AL+DG P L + V++G Sbjct: 73 ACAVASADEREIAEYNILGASLLAMRRAVSSLQIPAQAALVDGNRDPL-LTIPSTCVVRG 131 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D+ IAAASI+AKV+RDR M KYP YGF H GYPT H + I GP HRL Sbjct: 132 DARCACIAAASILAKVSRDRYMLELDAKYPQYGFAKHKGYPTRAHYEAILRYGPCPAHRL 191 Query: 200 TFRPLRNL 207 F LRNL Sbjct: 192 YF--LRNL 197 >gi|318606916|emb|CBY28414.1| ribonuclease HII [Yersinia enterocolitica subsp. palearctica Y11] Length = 198 Score = 151 bits (381), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 85/183 (46%), Positives = 114/183 (62%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++IT A+ S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPKQPIVGLADSKKLSEKRRLSLYDEITDKALSWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L + P LIDG P+ L + AV+KGDS Sbjct: 73 RAEPEEIDQLNILHATMLAMQRAVAGLHIAPDYVLIDGNRCPK-LAMPSLAVVKGDSRVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M ++P+YGF H GYPTA H + G + HR +F P+ Sbjct: 132 EISAASILAKVTRDREMTELDLQFPEYGFAQHKGYPTAVHLDKLTTFGATEHHRRSFGPV 191 Query: 205 RNL 207 + + Sbjct: 192 KRV 194 >gi|228916474|ref|ZP_04080040.1| Ribonuclease [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228947556|ref|ZP_04109846.1| Ribonuclease [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123351|ref|ZP_04252555.1| Ribonuclease [Bacillus cereus 95/8201] gi|228660127|gb|EEL15763.1| Ribonuclease [Bacillus cereus 95/8201] gi|228812076|gb|EEM58407.1| Ribonuclease [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228843053|gb|EEM88135.1| Ribonuclease [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 257 Score = 151 bits (381), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 93/194 (47%), Positives = 128/194 (65%), Gaps = 3/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +REK + +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KRE Y + Sbjct: 63 ENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYGE 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I + AI I + S Q ID+ NI++AT A+ A+ NL P LID +P +P Sbjct: 123 IKAKAIAIGVGIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPTPIP--Q 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHGV 240 Query: 194 SCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 241 LEEHRKSFAPIKDM 254 >gi|254293355|ref|YP_003059378.1| ribonuclease H [Hirschia baltica ATCC 49814] gi|254041886|gb|ACT58681.1| Ribonuclease H [Hirschia baltica ATCC 49814] Length = 194 Score = 151 bits (381), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 84/181 (46%), Positives = 108/181 (59%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 + G+DE GRG AGPV A+IL+P N G+NDSKK+S KKR++L I A+ SI Sbjct: 7 ICGVDEAGRGPWAGPVCAGAVILNPLNPIAGLNDSKKLSEKKRDKLALLIKEYALCWSIG 66 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID+ NI +A A+ AV+ L + P ALIDG P L C+ +I GD I Sbjct: 67 WASPEEIDELNIRQANHLAMQRAVQGLSIAPDLALIDGNDAPP-LDCRTETLIGGDGIEA 125 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AK RD M +YPDYGF H GY H +K GP IHR+TF+P+ Sbjct: 126 CISAASILAKTARDAKMVEYDLQYPDYGFAKHKGYGVKAHSDALKRIGPCPIHRMTFKPV 185 Query: 205 R 205 R Sbjct: 186 R 186 >gi|58581586|ref|YP_200602.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae KACC10331] gi|75435665|sp|Q5H1F4|RNH2_XANOR RecName: Full=Ribonuclease HII; Short=RNase HII gi|58426180|gb|AAW75217.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae KACC10331] Length = 252 Score = 151 bits (381), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 83/182 (45%), Positives = 119/182 (65%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DE GRG LAGPV VAA++ DPN G++DSK+++ ++RE+LY +I A+ S+ Sbjct: 43 VAGVDEAGRGPLAGPVAVAAVVFDPNKPRINGLDDSKQLTAERREQLYARIVDRALSWSV 102 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD++ Sbjct: 103 VLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALD 162 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I AASI+AKVTRDRLM H ++P+Y FD H GY T H ++ GP HR +F P Sbjct: 163 RAIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYSTPMHLAALQTHGPCPQHRRSFAP 222 Query: 204 LR 205 +R Sbjct: 223 VR 224 >gi|167855723|ref|ZP_02478479.1| ribonuclease HII [Haemophilus parasuis 29755] gi|167853179|gb|EDS24437.1| ribonuclease HII [Haemophilus parasuis 29755] Length = 195 Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 85/180 (47%), Positives = 113/180 (62%), Gaps = 2/180 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV A+ILDPN G+ DSKK+S K+R L E+I + A+ S+ Sbjct: 10 IAGVDEVGRGPLVGAVVTVAVILDPNQPIEGLADSKKLSEKRRLALAEEIKAKALCWSLG 69 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L++ P L+DG IP LP A AV+KGDS Sbjct: 70 RAEPDEIDQLNILHATMLAMQRAVAGLRIQPDFVLVDGNRIP-TLPMPAQAVVKGDSFVA 128 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M K+YP+YGF H GYPT H + ++ G + HR +F P+ Sbjct: 129 EISAASILAKVARDQEMDELDKQYPEYGFAQHKGYPTKLHFEKLESLGVTPYHRKSFAPV 188 >gi|119477116|ref|ZP_01617352.1| ribonuclease HII [marine gamma proteobacterium HTCC2143] gi|119449479|gb|EAW30717.1| ribonuclease HII [marine gamma proteobacterium HTCC2143] Length = 201 Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 88/193 (45%), Positives = 119/193 (61%), Gaps = 2/193 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 +EA V + +AG+DEVGRG LAG VV AA+ILDP N G++DSKK++ KKRE L+ Sbjct: 1 MEAFVSNYSGILLAGVDEVGRGPLAGDVVAAAVILDPANPIRGLDDSKKLTEKKREALFP 60 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I A+ ++ AS + ID+ NI +A+L A+ AVE L + P L+DG +P Sbjct: 61 EIQEKALSWFVARASVREIDELNILQASLLAMKRAVEGLVLQPEHVLVDGNKLPR-WAYS 119 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A AV++GDS I AASI+AKV RDR M +YP YGF H GYPT H + G Sbjct: 120 AEAVVRGDSRVQVIGAASILAKVVRDREMVAFDDEYPGYGFAGHKGYPTRVHMTALDVLG 179 Query: 193 PSCIHRLTFRPLR 205 + IHR +F P++ Sbjct: 180 VTPIHRSSFGPVK 192 >gi|156935301|ref|YP_001439217.1| ribonuclease HII [Cronobacter sakazakii ATCC BAA-894] gi|166225185|sp|A7MI15|RNH2_ENTS8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|156533555|gb|ABU78381.1| hypothetical protein ESA_03158 [Cronobacter sakazakii ATCC BAA-894] Length = 198 Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 110/182 (60%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R L+++I AI S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPLKPIVGLADSKKLSEKRRLALFDEIKEKAIAWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L V P L+DG P LP + AV+KGDS Sbjct: 72 RAEPHEIDELNILHATMLAMQRAVAGLAVTPEYVLVDGNRCPA-LPMPSMAVVKGDSRVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMAELDLTFPQYGFAQHKGYPTAFHLERLAEHGATAHHRRSFAPV 190 Query: 205 RN 206 R Sbjct: 191 RR 192 >gi|49478406|ref|YP_037898.1| ribonuclease HII [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118479059|ref|YP_896210.1| ribonuclease HII [Bacillus thuringiensis str. Al Hakam] gi|225865818|ref|YP_002751196.1| ribonuclease HII [Bacillus cereus 03BB102] gi|229186077|ref|ZP_04313246.1| Ribonuclease [Bacillus cereus BGSC 6E1] gi|301055327|ref|YP_003793538.1| ribonuclease HII [Bacillus anthracis CI] gi|73917596|sp|Q6HEX8|RNH2_BACHK RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225168|sp|A0RHL0|RNH2_BACAH RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807966|sp|C1EP61|RNH2_BACC3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|49329962|gb|AAT60608.1| ribonuclease HII (RNase HII) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118418284|gb|ABK86703.1| RNase HII [Bacillus thuringiensis str. Al Hakam] gi|225786445|gb|ACO26662.1| ribonuclease HII [Bacillus cereus 03BB102] gi|228597253|gb|EEK54904.1| Ribonuclease [Bacillus cereus BGSC 6E1] gi|300377496|gb|ADK06400.1| ribonuclease HII [Bacillus cereus biovar anthracis str. CI] Length = 257 Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 93/194 (47%), Positives = 128/194 (65%), Gaps = 3/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +REK + +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KRE Y + Sbjct: 63 ENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYGE 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I + AI I + S Q ID+ NI++AT A+ A+ NL P LID +P +P Sbjct: 123 IKAKAIAIGVGIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPTPIP--Q 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHGV 240 Query: 194 SCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 241 LEEHRKSFAPIKDM 254 >gi|260437013|ref|ZP_05790829.1| ribonuclease HII [Butyrivibrio crossotus DSM 2876] gi|292810322|gb|EFF69527.1| ribonuclease HII [Butyrivibrio crossotus DSM 2876] Length = 210 Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 93/186 (50%), Positives = 118/186 (63%), Gaps = 5/186 (2%) Query: 19 REKNMW-PVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKIT 76 RE ++ + GIDE GRG L GPVV AA+IL D NI + INDSKK+S KREE+Y++I Sbjct: 22 REYKIYGTICGIDEAGRGPLCGPVVAAAVILPDEYNILY-INDSKKLSETKREEVYKEID 80 Query: 77 SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 A+ + S + ID+ NI +AT +A+ A+ L V P L D +IP + + Sbjct: 81 KYAVAYGVGIVSPERIDEINILQATYEAMRTAIHKLSVTPDILLNDAVTIPM-VDIKQVP 139 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 +IKGD+ S SIAAASI+AKVTRD LM K YP+YGF H GY TA H + IKE GP Sbjct: 140 IIKGDAKSQSIAAASIVAKVTRDHLMEEYDKLYPEYGFAKHKGYGTAAHIKAIKEYGPCP 199 Query: 196 IHRLTF 201 IHR TF Sbjct: 200 IHRRTF 205 >gi|291550686|emb|CBL26948.1| Ribonuclease HII [Ruminococcus torques L2-14] Length = 252 Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 88/177 (49%), Positives = 115/177 (64%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84 + GIDE GRG LAGPVV A+IL + +NDSKK+S KREELY++I A+ + + Sbjct: 72 ICGIDEAGRGPLAGPVVAGAVILPKDCEILYLNDSKKLSAAKREELYDEIMEKAVAAAVG 131 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID+ NI +AT +A+ A+ L V P L D +IPE + Q +IKGD+ S+ Sbjct: 132 MASPARIDEINILQATYEAMREAISKLAVEPGILLNDAVTIPEMIIPQ-VPIIKGDAKSV 190 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASI+AKVTRDRLM K P+YGF H GY + +H + IK+ GP+ IHR TF Sbjct: 191 SIAAASILAKVTRDRLMVEYDKVMPEYGFAGHKGYGSKEHIEAIKKYGPTPIHRKTF 247 >gi|254739600|ref|ZP_05197294.1| ribonuclease HII [Bacillus anthracis str. Kruger B] Length = 257 Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 93/195 (47%), Positives = 129/195 (66%), Gaps = 3/195 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +REK + +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KRE Y + Sbjct: 63 ENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYGE 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I + AI I + S Q ID+ NI++AT A+ A+ NL P LID +P +P Sbjct: 123 IKAKAIAIGVGIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPAPIP--Q 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHGV 240 Query: 194 SCIHRLTFRPLRNLS 208 HR +F P+++++ Sbjct: 241 LEEHRKSFAPIKDMN 255 >gi|188577177|ref|YP_001914106.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521629|gb|ACD59574.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae PXO99A] Length = 211 Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 83/182 (45%), Positives = 119/182 (65%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DE GRG LAGPV VAA++ DPN G++DSK+++ ++RE+LY +I A+ S+ Sbjct: 2 VAGVDEAGRGPLAGPVAVAAVVFDPNKPRINGLDDSKQLTAERREQLYARIVDRALSWSV 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD++ Sbjct: 62 VLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALD 121 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I AASI+AKVTRDRLM H ++P+Y FD H GY T H ++ GP HR +F P Sbjct: 122 RAIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYSTPMHLAALQTHGPCPQHRRSFAP 181 Query: 204 LR 205 +R Sbjct: 182 VR 183 >gi|332160606|ref|YP_004297183.1| ribonuclease HII [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664836|gb|ADZ41480.1| ribonuclease HII [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859613|emb|CBX69953.1| ribonuclease HII [Yersinia enterocolitica W22703] Length = 198 Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 85/183 (46%), Positives = 114/183 (62%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++IT A+ S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEITDKALSWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L + P LIDG P+ L + AV+KGDS Sbjct: 73 RAEPEEIDQLNILHATMLAMQRAVAGLHIAPDYVLIDGNRCPK-LTMPSLAVVKGDSRVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M ++P+YGF H GYPTA H + G + HR +F P+ Sbjct: 132 EISAASILAKVTRDREMTELDLQFPEYGFAQHKGYPTAVHLDKLTTFGATEHHRRSFGPV 191 Query: 205 RNL 207 + + Sbjct: 192 KRV 194 >gi|322831602|ref|YP_004211629.1| Ribonuclease H [Rahnella sp. Y9602] gi|321166803|gb|ADW72502.1| Ribonuclease H [Rahnella sp. Y9602] Length = 198 Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 85/182 (46%), Positives = 113/182 (62%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK+S K+RE LY +I A+ S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPANPIAGLADSKKLSEKRREALYIEIKEKALAWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P+ LP + A++KGDS Sbjct: 73 RAEPHEIDELNILHATMLAMQRAVAGLCITPDMVLIDGNRCPK-LPMASQAIVKGDSKVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M ++P+YGF H GYPT H + + G + HR +F P+ Sbjct: 132 EISAASILAKVTRDREMVELDLQFPEYGFAKHKGYPTPVHLESLARLGATTHHRRSFSPV 191 Query: 205 RN 206 + Sbjct: 192 KR 193 >gi|171779427|ref|ZP_02920391.1| hypothetical protein STRINF_01272 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282044|gb|EDT47475.1| hypothetical protein STRINF_01272 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 262 Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 126/206 (61%), Gaps = 12/206 (5%) Query: 12 FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 LE M+R EK ++ + GIDEVGRG LAGPVV A +IL N +NDSKKI Sbjct: 55 LRLENMLRYEKELYQAGYEAIGGIDEVGRGPLAGPVVTACVILPKNCKIKHLNDSKKIPK 114 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALID 121 K EE+YE++ + A+ + I + ID NI++AT + A++ ++ P LID Sbjct: 115 KHHEEIYEEVLARALGVGIGVIDNNVIDDINIYEATKVGMLQAIDQIKGQVTKPDYLLID 174 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + D+P Q+ IKGD+ SLSIAAASI+AKVTRDR+M K+YP Y F+ +VGY T Sbjct: 175 AMHLDTDIPQQSL--IKGDANSLSIAAASIVAKVTRDRMMADYAKEYPGYAFEKNVGYGT 232 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207 H +KE G + IHR TF P++++ Sbjct: 233 KDHLVGLKEHGITPIHRKTFEPIKSM 258 >gi|206900540|ref|YP_002251240.1| ribonuclease HII [Dictyoglomus thermophilum H-6-12] gi|206739643|gb|ACI18701.1| ribonuclease HII [Dictyoglomus thermophilum H-6-12] Length = 203 Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 89/194 (45%), Positives = 126/194 (64%), Gaps = 12/194 (6%) Query: 19 REKNMWP----VAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHKKREELYE 73 RE+ +W +AG+DE GRGALAGPV A+IL P ++IP +NDSK ++ ++REEL+E Sbjct: 14 RERELWYYFKYIAGVDEAGRGALAGPVYSGAVILPPFSSIP--VNDSKLLTPREREELFE 71 Query: 74 KITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPE-DLP 130 I ++ S A+ + I+K I +AT A+ AVE L++ P LIDG IP+ D+P Sbjct: 72 IIKKESLCWSFGYATVEEIEKFGILQATFLAMKRAVEGLEIKPEYLLIDGNIPIPDIDIP 131 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + V+KGD LSIA+ASI+AKV RD+ M+ K+YP+YGF H GY T +H++ IK+ Sbjct: 132 QET--VVKGDRRCLSIASASIVAKVLRDKYMKELDKEYPEYGFGKHKGYATKEHREKIKD 189 Query: 191 KGPSCIHRLTFRPL 204 G IHR F+ L Sbjct: 190 LGTLVIHRKGFKLL 203 >gi|319941636|ref|ZP_08015960.1| ribonuclease HII [Sutterella wadsworthensis 3_1_45B] gi|319804866|gb|EFW01720.1| ribonuclease HII [Sutterella wadsworthensis 3_1_45B] Length = 245 Score = 150 bits (380), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 86/188 (45%), Positives = 110/188 (58%), Gaps = 6/188 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 AG+DE GRG LAGPV AA+ILDP N G+ DSKK+S KKRE L I A+ I Sbjct: 36 TAGVDEAGRGPLAGPVCAAAVILDPENPIEGLADSKKLSAKKREALAPIIRERALAWGIG 95 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQ-----VIPRSALIDGRSIPEDLPCQAFAVIKG 139 A+ + ID+ NI AT A+ AV L+ V P LIDG P LPC + ++KG Sbjct: 96 WATVEEIDRVNILNATYLAMERAVATLKSRSGSVTPEYILIDGNRRPPHLPCMSDTIVKG 155 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D +I+AASI+AK RD M +K+P YGF H GY TA+H +K GP HR Sbjct: 156 DDKVPAISAASILAKTARDHRMAELDQKWPAYGFAKHAGYGTAQHLDALKRLGPCPEHRT 215 Query: 200 TFRPLRNL 207 TF P++++ Sbjct: 216 TFEPIKSM 223 >gi|109897588|ref|YP_660843.1| ribonuclease H [Pseudoalteromonas atlantica T6c] gi|123171510|sp|Q15WE9|RNH2_PSEA6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|109699869|gb|ABG39789.1| RNase HII [Pseudoalteromonas atlantica T6c] Length = 197 Score = 150 bits (380), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 84/181 (46%), Positives = 114/181 (62%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSKKIS KKR L++ I +A+ + + Sbjct: 5 IAGVDEVGRGPLVGDVVTAAVILDPAKPIAGLADSKKISEKKRLALFDIIMQNALAVCVG 64 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS Q ID+ NI AT+ A+ AV+ L P +DG P + + AV+KGDS+ Sbjct: 65 RASPQEIDELNILHATMLAMKRAVQGLATQPTFVRVDGNRCP-NWDYASEAVVKGDSLFA 123 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKVTRD M H +P+YGF H GYPT H + + E GP +R++F+P+ Sbjct: 124 EISAASIIAKVTRDAEMSELHNAHPEYGFAQHKGYPTKAHLEKLAELGPLSQYRMSFKPV 183 Query: 205 R 205 + Sbjct: 184 Q 184 >gi|329888215|ref|ZP_08266813.1| ribonuclease HII family protein [Brevundimonas diminuta ATCC 11568] gi|328846771|gb|EGF96333.1| ribonuclease HII family protein [Brevundimonas diminuta ATCC 11568] Length = 199 Score = 150 bits (379), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 91/197 (46%), Positives = 117/197 (59%), Gaps = 4/197 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ELEA V G+DE GRG AGPV AA+IL+P+++P GI+DSK ++ K+R L Sbjct: 2 LELEARATWNGH--VCGVDEAGRGPWAGPVSAAAVILNPDDLPPGIDDSKALTEKRRAAL 59 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 I S A+ + AS + ID+ NI AT A+ AVE L P AL+DG + LP Sbjct: 60 EPLIKSRALAWGVGFASVEEIDELNILHATGLAMRRAVEALAHAPVHALVDG-NYRFKLP 118 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 C V+KGDS SLSIAAASI+AK RDRLM YP YGF SH GY HQ+ ++ Sbjct: 119 CAVTPVVKGDSRSLSIAAASILAKTARDRLMIEMDATYPGYGFASHKGYNAPIHQKALQT 178 Query: 191 KGPSCIHRLTFRPLRNL 207 GP HR ++ P++ L Sbjct: 179 LGPCPEHRRSWAPIKAL 195 >gi|189043616|sp|A0KHH7|RNH2_AERHH RecName: Full=Ribonuclease HII; Short=RNase HII Length = 196 Score = 150 bits (379), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 89/181 (49%), Positives = 119/181 (65%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L G VV AA+ILDP N G+NDSKK+S KKR L+++I A+ S+ Sbjct: 11 VAGVDEVGRGPLVGDVVTAAVILDPANPIIGLNDSKKLSEKKRLALFDEIKEKALAWSVG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID+ NI AT+ A+ AV L + P IDG P L +A AV+KGDS+ Sbjct: 71 RASPAEIDELNILHATMLAMQRAVAGLSIAPELVFIDGNRCPS-LSMEARAVVKGDSLVA 129 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKVTRD M ++P+YGF H GYPTA+H ++ E+GP +R +F+P+ Sbjct: 130 AISAASILAKVTRDAEMTELDSRHPEYGFARHKGYPTAEHLAILAERGPLPEYRKSFKPV 189 Query: 205 R 205 R Sbjct: 190 R 190 >gi|30263840|ref|NP_846217.1| ribonuclease HII [Bacillus anthracis str. Ames] gi|47529265|ref|YP_020614.1| ribonuclease HII [Bacillus anthracis str. 'Ames Ancestor'] gi|49186687|ref|YP_029939.1| ribonuclease HII [Bacillus anthracis str. Sterne] gi|65321164|ref|ZP_00394123.1| COG0164: Ribonuclease HII [Bacillus anthracis str. A2012] gi|167642027|ref|ZP_02400257.1| ribonuclease HII [Bacillus anthracis str. A0193] gi|170689655|ref|ZP_02880835.1| ribonuclease HII [Bacillus anthracis str. A0465] gi|170709356|ref|ZP_02899770.1| ribonuclease HII [Bacillus anthracis str. A0389] gi|177655996|ref|ZP_02937123.1| ribonuclease HII [Bacillus anthracis str. A0174] gi|227813255|ref|YP_002813264.1| ribonuclease HII [Bacillus anthracis str. CDC 684] gi|229600963|ref|YP_002868074.1| ribonuclease HII [Bacillus anthracis str. A0248] gi|254683456|ref|ZP_05147316.1| ribonuclease HII [Bacillus anthracis str. CNEVA-9066] gi|254721977|ref|ZP_05183766.1| ribonuclease HII [Bacillus anthracis str. A1055] gi|254735875|ref|ZP_05193581.1| ribonuclease HII [Bacillus anthracis str. Western North America USA6153] gi|254759311|ref|ZP_05211336.1| ribonuclease HII [Bacillus anthracis str. Australia 94] gi|39932347|sp|Q81WJ9|RNH2_BACAN RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807964|sp|C3P5N8|RNH2_BACAA RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807965|sp|C3L790|RNH2_BACAC RecName: Full=Ribonuclease HII; Short=RNase HII gi|30258484|gb|AAP27703.1| ribonuclease HII [Bacillus anthracis str. Ames] gi|47504413|gb|AAT33089.1| ribonuclease HII [Bacillus anthracis str. 'Ames Ancestor'] gi|49180614|gb|AAT55990.1| ribonuclease HII [Bacillus anthracis str. Sterne] gi|167510007|gb|EDR85423.1| ribonuclease HII [Bacillus anthracis str. A0193] gi|170125730|gb|EDS94643.1| ribonuclease HII [Bacillus anthracis str. A0389] gi|170666379|gb|EDT17162.1| ribonuclease HII [Bacillus anthracis str. A0465] gi|172079895|gb|EDT65003.1| ribonuclease HII [Bacillus anthracis str. A0174] gi|227003723|gb|ACP13466.1| ribonuclease HII [Bacillus anthracis str. CDC 684] gi|229265371|gb|ACQ47008.1| ribonuclease HII [Bacillus anthracis str. A0248] Length = 257 Score = 150 bits (379), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 93/194 (47%), Positives = 128/194 (65%), Gaps = 3/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +REK + +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KRE Y + Sbjct: 63 ENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYGE 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I + AI I + S Q ID+ NI++AT A+ A+ NL P LID +P +P Sbjct: 123 IKAKAIAIGVGIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPAPIP--Q 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHGV 240 Query: 194 SCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 241 LEEHRKSFAPIKDM 254 >gi|253573503|ref|ZP_04850846.1| ribonuclease HII [Paenibacillus sp. oral taxon 786 str. D14] gi|251847031|gb|EES75036.1| ribonuclease HII [Paenibacillus sp. oral taxon 786 str. D14] Length = 206 Score = 150 bits (379), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 91/197 (46%), Positives = 120/197 (60%), Gaps = 11/197 (5%) Query: 20 EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E+ W +AGIDEVGRG L G VV AA+IL + +NDSKK+S KKRE+L++ Sbjct: 8 EREYWQAGYSHIAGIDEVGRGCLFGDVVAAAVILPQGLVLEDVNDSKKLSAKKREKLFDL 67 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI + I S ID+ NI +AT A+ AVE L + P LID + D+P Sbjct: 68 IMEQAIAVGIGSVDAATIDQINIKQATRRAMKQAVEQLSIQPEYLLIDAEKV--DVPIPQ 125 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK-KYPDYGFDSHVGYPTAKHQQVIKEKG 192 +VIKGD+ S SIAAASI+AKVTRDRL + +YP+YG H GY T H++ + G Sbjct: 126 LSVIKGDATSQSIAAASIVAKVTRDRLCQGEWDARYPEYGIAVHKGYATKLHREQLLALG 185 Query: 193 PSCIHRLTFRPLRNLSV 209 P+ +HR +F +RNL V Sbjct: 186 PTPMHRKSF--MRNLFV 200 >gi|218904966|ref|YP_002452800.1| ribonuclease HII [Bacillus cereus AH820] gi|226736812|sp|B7JJB6|RNH2_BACC0 RecName: Full=Ribonuclease HII; Short=RNase HII gi|218537806|gb|ACK90204.1| ribonuclease HII [Bacillus cereus AH820] Length = 257 Score = 150 bits (379), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 93/194 (47%), Positives = 128/194 (65%), Gaps = 3/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +REK + +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KRE Y + Sbjct: 63 ENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYGE 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I + AI I + S Q ID+ NI++AT A+ A+ NL P LID +P +P Sbjct: 123 IKAKAIAIGVXIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPTPIP--Q 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHGV 240 Query: 194 SCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 241 LEEHRKSFAPIKDM 254 >gi|90961695|ref|YP_535611.1| ribonuclease HII [Lactobacillus salivarius UCC118] gi|122449076|sp|Q1WU07|RNH2_LACS1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|90820889|gb|ABD99528.1| Ribonuclease HII [Lactobacillus salivarius UCC118] gi|300214494|gb|ADJ78910.1| Ribonuclease HII (RNase HII) [Lactobacillus salivarius CECT 5713] Length = 255 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 86/194 (44%), Positives = 131/194 (67%), Gaps = 8/194 (4%) Query: 20 EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E+++W +AG+DEVGRG LAGPVV AA+IL + F +NDSK++S KKREELY+K Sbjct: 61 ERDLWDKGIEYIAGVDEVGRGPLAGPVVTAAVILPHDFDVFEVNDSKQLSEKKREELYKK 120 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A+ +S+ + + ID+ NI++AT A+ A+E+L + P+ ++D +I +P Sbjct: 121 ILEKAVAVSVGLSDNNLIDEVNIYEATRLAMKQAIESLNITPQKIIVDAMTIDTKIP--Q 178 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGD+ S S+AAASI+AKVTRD LM+ + YP YGF+ + GY T +H + ++ KG Sbjct: 179 LRLIKGDAKSASVAAASIVAKVTRDHLMQFYARIYPGYGFEKNDGYGTKQHLEGLENKGV 238 Query: 194 SCIHRLTFRPLRNL 207 + IHR +F P++ + Sbjct: 239 TPIHRQSFEPVKKI 252 >gi|91205326|ref|YP_537681.1| ribonuclease HII [Rickettsia bellii RML369-C] gi|157826929|ref|YP_001495993.1| ribonuclease HII [Rickettsia bellii OSU 85-389] gi|122425777|sp|Q1RJ72|RNH2_RICBR RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226647|sp|A8GVS9|RNH2_RICB8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|91068870|gb|ABE04592.1| Ribonuclease HII [Rickettsia bellii RML369-C] gi|157802233|gb|ABV78956.1| ribonuclease HII [Rickettsia bellii OSU 85-389] Length = 196 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 95/176 (53%), Positives = 116/176 (65%), Gaps = 2/176 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 +AGIDE GRG LAGPVV AA+I+D NNI GI DSKK+S KKRE LYE+IT++ I + Sbjct: 17 LAGIDEAGRGPLAGPVVAAAVIVDQNNIIAGIKDSKKLSKKKRELLYEQITANYIWATGI 76 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 SH IDK NI +AT A A ENL P L+DG D + ++I GD++SLS Sbjct: 77 ISHTEIDKINILEATKKACILAAENLSTKPEIVLVDGNMQFSD--KRFISIINGDNLSLS 134 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASIIAKVTRDRLM ++P Y + + GY T +H Q IKE G S HRL+F Sbjct: 135 IAAASIIAKVTRDRLMLELSNEFPQYLWHKNSGYGTKEHAQAIKEYGLSPYHRLSF 190 >gi|199599536|ref|ZP_03212924.1| Ribonuclease HII [Lactobacillus rhamnosus HN001] gi|258508404|ref|YP_003171155.1| ribonuclease HII [Lactobacillus rhamnosus GG] gi|199589577|gb|EDY97695.1| Ribonuclease HII [Lactobacillus rhamnosus HN001] gi|257148331|emb|CAR87304.1| Ribonuclease HII [Lactobacillus rhamnosus GG] gi|259649719|dbj|BAI41881.1| ribonuclease HII [Lactobacillus rhamnosus GG] Length = 252 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 86/192 (44%), Positives = 122/192 (63%), Gaps = 8/192 (4%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 E+ +W VAG+DEVGRG LAGPVV AA+IL P+ + +NDSK+++ +R+ LY I Sbjct: 60 ERKLWKMYSHVAGLDEVGRGPLAGPVVTAAVIL-PHQFKWPVNDSKQLTAHERDVLYPHI 118 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 + AI + I A + ID+ NI+ AT A+ AV +L+V P L+D +P +LP + Sbjct: 119 LTEAIAVGIGVADNHEIDRENIYHATELAMAQAVSHLRVAPEFLLVDAMHVPVNLPQERL 178 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 IKGD+ S+SIAAASI+AKV RDRLM + + YP Y F ++GY T H + G + Sbjct: 179 --IKGDANSISIAAASIVAKVIRDRLMVMYDRVYPGYDFKDNMGYGTKAHLAGLATHGVT 236 Query: 195 CIHRLTFRPLRN 206 IHR +F P+R+ Sbjct: 237 PIHRRSFGPVRH 248 >gi|302392411|ref|YP_003828231.1| Ribonuclease H [Acetohalobium arabaticum DSM 5501] gi|302204488|gb|ADL13166.1| Ribonuclease H [Acetohalobium arabaticum DSM 5501] Length = 315 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 81/186 (43%), Positives = 113/186 (60%), Gaps = 4/186 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83 + G+DE GRG LAGPV A +IL P +I G+NDSK++S KREE + K+ A+ I + Sbjct: 78 IGGVDEAGRGPLAGPVAAAVVIL-PEDIWMPGLNDSKQLSEAKREEFFAKLQEEAVDIGV 136 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 ID+ NI A A+ A+ NL+ P L+DG IPE + + ++ GD S Sbjct: 137 GLVDSDRIDEVNIRNANYQAMREAISNLEQTPDYLLVDGEEIPE-IGIEQRRLVDGDQRS 195 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +SIAAASIIAKVTRDR++ ++YP+Y F H GY TA H ++E GP IHR +F Sbjct: 196 VSIAAASIIAKVTRDRMLVEYDQEYPEYNFVQHKGYGTADHIAALEEHGPCPIHRYSFSK 255 Query: 204 LRNLSV 209 +R ++ Sbjct: 256 VREAAL 261 >gi|315633618|ref|ZP_07888908.1| ribonuclease HII [Aggregatibacter segnis ATCC 33393] gi|315477660|gb|EFU68402.1| ribonuclease HII [Aggregatibacter segnis ATCC 33393] Length = 199 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 84/183 (45%), Positives = 116/183 (63%), Gaps = 1/183 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L E+I A+ ++ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLLLAEEIKQKALAWALG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI A++ A+ AV++L++ P L+DG IP +L A AV+KGD++ Sbjct: 73 RAEPHEIDELNILHASMLAMERAVKHLKIQPHFVLVDGNRIPSNLSIPAQAVVKGDALVA 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M ++YP Y F H GYPT H + I E G +R +F P+ Sbjct: 133 EISAASILAKVARDQEMLELDQQYPQYAFAQHKGYPTKLHLEKIAEFGLLPQYRRSFAPV 192 Query: 205 RNL 207 + L Sbjct: 193 KKL 195 >gi|51473401|ref|YP_067158.1| ribonuclease HII [Rickettsia typhi str. Wilmington] gi|73917831|sp|Q68XG6|RNH2_RICTY RecName: Full=Ribonuclease HII; Short=RNase HII gi|51459713|gb|AAU03676.1| Endoribonuclease H [Rickettsia typhi str. Wilmington] Length = 193 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 85/179 (47%), Positives = 114/179 (63%), Gaps = 2/179 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + VAG+DE GRG+L GPVV +A+I+D +I GI DSKK+S KR+ LYE+ITS+ + S Sbjct: 15 YIVAGVDEAGRGSLVGPVVASAVIIDKVDIISGIKDSKKLSKNKRDILYEQITSNYVWST 74 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + H ID NI +AT A AV NL + P L+DG D+ + ++I GD++S Sbjct: 75 AIIEHTEIDDINILEATKKACTIAVANLSLKPEKILVDGNMKFSDV--RFISIINGDNLS 132 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 LSIAAASIIAKVTRDRLM +YP Y + + GY T +H + I G S HR +F+ Sbjct: 133 LSIAAASIIAKVTRDRLMLELSAEYPQYLWHKNYGYGTREHIEAINTHGLSSYHRKSFK 191 >gi|229552204|ref|ZP_04440929.1| ribonuclease H [Lactobacillus rhamnosus LMS2-1] gi|258539618|ref|YP_003174117.1| ribonuclease HII [Lactobacillus rhamnosus Lc 705] gi|229314426|gb|EEN80399.1| ribonuclease H [Lactobacillus rhamnosus LMS2-1] gi|257151294|emb|CAR90266.1| Ribonuclease HII [Lactobacillus rhamnosus Lc 705] Length = 252 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 86/192 (44%), Positives = 122/192 (63%), Gaps = 8/192 (4%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 E+ +W VAG+DEVGRG LAGPVV AA+IL P+ + +NDSK+++ +R+ LY I Sbjct: 60 ERKLWTMYSHVAGLDEVGRGPLAGPVVTAAVIL-PHQFKWPVNDSKQLTAHERDVLYPHI 118 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 + AI + I A + ID+ NI+ AT A+ AV +L+V P L+D +P +LP + Sbjct: 119 LTEAIAVGIGVADNHEIDRENIYHATELAMAQAVSHLRVAPEFLLVDAMHVPVNLPQERL 178 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 IKGD+ S+SIAAASI+AKV RDRLM + + YP Y F ++GY T H + G + Sbjct: 179 --IKGDANSISIAAASIVAKVIRDRLMVMYDQVYPGYDFKDNMGYGTKAHLAGLAAHGVT 236 Query: 195 CIHRLTFRPLRN 206 IHR +F P+R+ Sbjct: 237 PIHRRSFGPVRH 248 >gi|296330821|ref|ZP_06873296.1| ribonuclease HII [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674339|ref|YP_003866011.1| ribonuclease HII [Bacillus subtilis subsp. spizizenii str. W23] gi|296151826|gb|EFG92700.1| ribonuclease HII [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412583|gb|ADM37702.1| ribonuclease HII [Bacillus subtilis subsp. spizizenii str. W23] Length = 255 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 81/194 (41%), Positives = 119/194 (61%), Gaps = 3/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + R K +AG+DEVGRG LAGPVV +A+IL G+ DSKK+S KKR+E YE Sbjct: 63 ERLARNKGFRLIAGVDEVGRGPLAGPVVASAVILPEECEILGLTDSKKLSEKKRDEYYEL 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A+ + I ID+ NI++A+ A+ A+ +L P L+D ++P + Sbjct: 123 IMKEALAVGIGIVEASVIDEVNIYEASKMAMVKAIHDLSDTPDYLLVDAMTLP--VGIDQ 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ S+SIAA + IAKVTRDR+M + YP YGF+ + GY T +H + + GP Sbjct: 181 SSIIKGDAKSVSIAAGACIAKVTRDRMMSAYAETYPIYGFEKNKGYGTKEHLEALAAHGP 240 Query: 194 SCIHRLTFRPLRNL 207 + +HR TF P+++ Sbjct: 241 TELHRKTFAPVQSF 254 >gi|117619478|ref|YP_855728.1| ribonuclease HII [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560885|gb|ABK37833.1| ribonuclease HII [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 211 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 89/181 (49%), Positives = 119/181 (65%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L G VV AA+ILDP N G+NDSKK+S KKR L+++I A+ S+ Sbjct: 26 VAGVDEVGRGPLVGDVVTAAVILDPANPIIGLNDSKKLSEKKRLALFDEIKEKALAWSVG 85 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID+ NI AT+ A+ AV L + P IDG P L +A AV+KGDS+ Sbjct: 86 RASPAEIDELNILHATMLAMQRAVAGLSIAPELVFIDGNRCPS-LSMEARAVVKGDSLVA 144 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKVTRD M ++P+YGF H GYPTA+H ++ E+GP +R +F+P+ Sbjct: 145 AISAASILAKVTRDAEMTELDSRHPEYGFARHKGYPTAEHLAILAERGPLPEYRKSFKPV 204 Query: 205 R 205 R Sbjct: 205 R 205 >gi|229157413|ref|ZP_04285491.1| Ribonuclease [Bacillus cereus ATCC 4342] gi|228626140|gb|EEK82889.1| Ribonuclease [Bacillus cereus ATCC 4342] Length = 257 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 91/194 (46%), Positives = 130/194 (67%), Gaps = 3/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y++ Sbjct: 63 ENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYDE 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I + A+ I + S + ID+ NI++AT A+ AV NL P+ LID +P +P Sbjct: 123 IKAQAVAIGVGIVSPRVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPTPIP--Q 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHGI 240 Query: 194 SCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 241 LEEHRKSFAPIKDM 254 >gi|90407916|ref|ZP_01216091.1| ribonuclease HII [Psychromonas sp. CNPT3] gi|90311007|gb|EAS39117.1| ribonuclease HII [Psychromonas sp. CNPT3] Length = 204 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 85/184 (46%), Positives = 116/184 (63%), Gaps = 4/184 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILD NN G+ DSKK+S KK L+ +I A+ ISI Sbjct: 19 IAGVDEVGRGPLVGDVVTAAVILDANNPIEGLADSKKLSEKKLALLFTEIQEKALCISIG 78 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 AS ID NI +AT+ A+ AV+ L + P IDG P ++ C+A ++KGD+ Sbjct: 79 RASPTEIDDINILQATMLAMQRAVQGLSLQPNFVFIDGNRCPTLNMACEA--IVKGDARV 136 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASIIAKVTRD MR +YP YGF H GYPT H + +++ GP +R +F+P Sbjct: 137 AEISAASIIAKVTRDGEMRELDARYPQYGFAKHKGYPTKAHFEALEKYGPIDEYRKSFKP 196 Query: 204 LRNL 207 ++ + Sbjct: 197 VKKV 200 >gi|152980735|ref|YP_001353734.1| ribonuclease HII [Janthinobacterium sp. Marseille] gi|166225192|sp|A6SZN7|RNH2_JANMA RecName: Full=Ribonuclease HII; Short=RNase HII gi|151280812|gb|ABR89222.1| ribonuclease HII [Janthinobacterium sp. Marseille] Length = 210 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/201 (43%), Positives = 122/201 (60%), Gaps = 5/201 (2%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P+ L + + E + G+DE GRG LAGPV AA+ILDP G+ DSKK++ K Sbjct: 4 EDPNLSLFSFLDEDI---ICGVDEAGRGPLAGPVFAAAVILDPMRPIDGLRDSKKLTEVK 60 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R+ L +I A+ SI+ S + ID NI +AT+ A+ A+E L V+P ALIDG P Sbjct: 61 RDALAIEIKQYALSWSIAQCSEEEIDSLNILQATMLAMRRAIEGLHVVPTLALIDGNRCP 120 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 ++ A+IKGD +I+AASI+AK RD + + H +YP Y FD H GYPTA H + Sbjct: 121 VT-SVRSEAIIKGDDKVQAISAASILAKTARDHALGLLHIQYPHYAFDQHKGYPTALHLE 179 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 ++E G S +HR ++ P+R L Sbjct: 180 RLREHGVSPVHRKSYAPVRAL 200 >gi|282850261|ref|ZP_06259640.1| ribonuclease HII [Veillonella parvula ATCC 17745] gi|282579754|gb|EFB85158.1| ribonuclease HII [Veillonella parvula ATCC 17745] Length = 265 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/197 (44%), Positives = 131/197 (66%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ E M ++ ++ VAG+DEVGRG +AGPV VAA+IL P + G+NDSKK++ +KRE L Sbjct: 63 YDYEGMFYDQGIYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREAL 122 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ +S S + ID+ NI++AT A+Y A+ L V + + D +P DL Sbjct: 123 YDIIMDEAVAVSCISYGPEKIDELNIYEATRQAMYEAIRTLSVPAEAVVADAMKLP-DLR 181 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGDS S +IAAASIIAKVTRDR M+ ++P YGF H GY T H++ I++ Sbjct: 182 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDDEFPGYGFGIHKGYYTELHKEAIEQ 241 Query: 191 KGPSCIHRLTFRPLRNL 207 +G + +HR +F P++++ Sbjct: 242 QGVTPLHRKSFEPIKSI 258 >gi|91792925|ref|YP_562576.1| ribonuclease H [Shewanella denitrificans OS217] gi|123356872|sp|Q12NX3|RNH2_SHEDO RecName: Full=Ribonuclease HII; Short=RNase HII gi|91714927|gb|ABE54853.1| Ribonuclease H [Shewanella denitrificans OS217] Length = 214 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/189 (46%), Positives = 117/189 (61%), Gaps = 6/189 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDPN G+ DSKK+S K+ + LY +I A+ +S+ Sbjct: 26 VAGVDEVGRGPLIGDVVTAAVILDPNRPIAGLMDSKKLSEKRLQALYLEIMDKALAVSVG 85 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE---DLPCQAFAVIKGDS 141 A+ ID+ NI AT+ A+ AV L + P L+DG +PE + + A+IKGD Sbjct: 86 RANPSEIDELNILHATMLAMSRAVAGLNIKPERVLVDGNRLPEFALNAEVERHAIIKGDG 145 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + +I+AASIIAKVTRD M +YP+YGF H GYPT H + + + G HR +F Sbjct: 146 LVPAISAASIIAKVTRDEEMLQLDARYPEYGFAKHKGYPTKTHFEALAQFGVLPEHRKSF 205 Query: 202 RP--LRNLS 208 +P LR LS Sbjct: 206 KPVALRLLS 214 >gi|329296122|ref|ZP_08253458.1| ribonuclease H [Plautia stali symbiont] Length = 208 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 86/182 (47%), Positives = 113/182 (62%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R L+++I A+ S+ Sbjct: 12 IAGVDEVGRGPLVGAVVTAAVILDPARPIAGLADSKKLSEKRRLALFDEIKEKALAWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L + P LIDG P LP + AV+KGDS+ Sbjct: 72 RAEPEEIDQLNILHATMLAMQRAVAGLHIAPDFILIDGNRCPA-LPMPSQAVVKGDSLVR 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKVT DR M +P YGF H GYPTA H + + + G + HR +F P+ Sbjct: 131 EISAASIIAKVTCDREMAELDLLFPQYGFAQHKGYPTALHMEKLTQFGATPHHRRSFAPV 190 Query: 205 RN 206 RN Sbjct: 191 RN 192 >gi|294791913|ref|ZP_06757061.1| ribonuclease HII [Veillonella sp. 6_1_27] gi|294457143|gb|EFG25505.1| ribonuclease HII [Veillonella sp. 6_1_27] Length = 279 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/197 (44%), Positives = 131/197 (66%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ E M ++ ++ VAG+DEVGRG +AGPV VAA+IL P + G+NDSKK++ +KRE L Sbjct: 77 YDYEGMFYDQGIYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREAL 136 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ +S S + ID+ NI++AT A+Y A+ L V + + D +P DL Sbjct: 137 YDIIMDEAVAVSCISYGPEKIDELNIYEATRQAMYEAIRTLSVPAEAVVADAMKLP-DLR 195 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGDS S +IAAASIIAKVTRDR M+ ++P YGF H GY T H++ I++ Sbjct: 196 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDDEFPGYGFGIHKGYYTELHKEAIEQ 255 Query: 191 KGPSCIHRLTFRPLRNL 207 +G + +HR +F P++++ Sbjct: 256 QGVTPLHRKSFEPIKSI 272 >gi|269959037|ref|YP_003328826.1| ribonuclease HII [Anaplasma centrale str. Israel] gi|269848868|gb|ACZ49512.1| ribonuclease HII [Anaplasma centrale str. Israel] Length = 223 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/202 (43%), Positives = 122/202 (60%), Gaps = 3/202 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKK 67 P F +E ++ + + G+DEVG GA+AGPVV AA+ L + I DSK +S KK Sbjct: 2 PSFAIEDQLKSDTISVIVGVDEVGYGAIAGPVVAAAVYLPEREHGYIGDIKDSKMLSPKK 61 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 R+EL+ KI S A + A I+KHNI A+ ++ A++NL V L+DG P Sbjct: 62 RDELFCKIVSHAKYGVGFARVCEIEKHNILVASHISMKRALQNLGVKADLVLVDGSRTP- 120 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +LP ++ GDSIS SIAAASI+AKVTRDR M+ H+++P+YG++ + GY T H Sbjct: 121 NLPWAIKTIVGGDSISTSIAAASIVAKVTRDRFMKRLHEQHPEYGWNQNCGYGTKAHMIS 180 Query: 188 IKEKGPSCIHRLTFRPLRNLSV 209 IK G + HR TF P++ LS Sbjct: 181 IKLHGKTTHHRSTFAPVKQLST 202 >gi|166712746|ref|ZP_02243953.1| ribonuclease HII [Xanthomonas oryzae pv. oryzicola BLS256] Length = 251 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 83/182 (45%), Positives = 118/182 (64%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII-SI 83 VAG+DE GRG LAGPV VAA++ DPN G++DSK+++ ++RE LY +I A+ S+ Sbjct: 42 VAGVDEAGRGPLAGPVAVAAVVFDPNKPRINGLDDSKQLTAERREHLYARIVDRALAWSV 101 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD++ Sbjct: 102 VLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALD 161 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I AASI+AKVTRDRLM H ++P+Y FD H GY T H ++ GP HR +F P Sbjct: 162 RTIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYSTPMHLAALQTHGPCPQHRRSFAP 221 Query: 204 LR 205 +R Sbjct: 222 VR 223 >gi|15799865|ref|NP_285877.1| ribonuclease HII [Escherichia coli O157:H7 EDL933] gi|15829439|ref|NP_308212.1| ribonuclease HII [Escherichia coli O157:H7 str. Sakai] gi|168752165|ref|ZP_02777187.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4113] gi|168758706|ref|ZP_02783713.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4401] gi|168764954|ref|ZP_02789961.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4501] gi|168769950|ref|ZP_02794957.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4486] gi|168777709|ref|ZP_02802716.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4196] gi|168782075|ref|ZP_02807082.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4076] gi|168789292|ref|ZP_02814299.1| ribonuclease HII [Escherichia coli O157:H7 str. EC869] gi|168802471|ref|ZP_02827478.1| ribonuclease HII [Escherichia coli O157:H7 str. EC508] gi|187731145|ref|YP_001878985.1| ribonuclease HII [Shigella boydii CDC 3083-94] gi|194435006|ref|ZP_03067247.1| ribonuclease HII [Shigella dysenteriae 1012] gi|195939879|ref|ZP_03085261.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4024] gi|208805984|ref|ZP_03248321.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4206] gi|208813645|ref|ZP_03254974.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4045] gi|208821027|ref|ZP_03261347.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4042] gi|209400402|ref|YP_002268791.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4115] gi|217325357|ref|ZP_03441441.1| ribonuclease HII [Escherichia coli O157:H7 str. TW14588] gi|218698603|ref|YP_002406232.1| ribonuclease HII [Escherichia coli IAI39] gi|254791316|ref|YP_003076153.1| ribonuclease HII [Escherichia coli O157:H7 str. TW14359] gi|261226937|ref|ZP_05941218.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli O157:H7 str. FRIK2000] gi|261255341|ref|ZP_05947874.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli O157:H7 str. FRIK966] gi|291281005|ref|YP_003497823.1| Ribonuclease HII [Escherichia coli O55:H7 str. CB9615] gi|24638183|sp|Q8X8X6|RNH2_ECO57 RecName: Full=Ribonuclease HII; Short=RNase HII gi|226736818|sp|B7NIE5|RNH2_ECO7I RecName: Full=Ribonuclease HII; Short=RNase HII gi|238056776|sp|B5Z0G2|RNH2_ECO5E RecName: Full=Ribonuclease HII; Short=RNase HII gi|238689501|sp|B2U326|RNH2_SHIB3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|12512911|gb|AAG54485.1|AE005194_6 RNAse HII, degrades RNA of DNA-RNA hybrids [Escherichia coli O157:H7 str. EDL933] gi|13359641|dbj|BAB33608.1| RNAse HII [Escherichia coli O157:H7 str. Sakai] gi|187428137|gb|ACD07411.1| ribonuclease HII [Shigella boydii CDC 3083-94] gi|187767120|gb|EDU30964.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4196] gi|188013909|gb|EDU52031.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4113] gi|189000369|gb|EDU69355.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4076] gi|189354506|gb|EDU72925.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4401] gi|189361051|gb|EDU79470.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4486] gi|189365141|gb|EDU83557.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4501] gi|189371107|gb|EDU89523.1| ribonuclease HII [Escherichia coli O157:H7 str. EC869] gi|189375551|gb|EDU93967.1| ribonuclease HII [Escherichia coli O157:H7 str. EC508] gi|194416742|gb|EDX32870.1| ribonuclease HII [Shigella dysenteriae 1012] gi|208725785|gb|EDZ75386.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4206] gi|208734922|gb|EDZ83609.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4045] gi|208741150|gb|EDZ88832.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4042] gi|209161802|gb|ACI39235.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4115] gi|209745714|gb|ACI71164.1| RNAse HII [Escherichia coli] gi|209745716|gb|ACI71165.1| RNAse HII [Escherichia coli] gi|209745718|gb|ACI71166.1| RNAse HII [Escherichia coli] gi|209745720|gb|ACI71167.1| RNAse HII [Escherichia coli] gi|209745722|gb|ACI71168.1| RNAse HII [Escherichia coli] gi|217321578|gb|EEC30002.1| ribonuclease HII [Escherichia coli O157:H7 str. TW14588] gi|218368589|emb|CAR16326.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli IAI39] gi|254590716|gb|ACT70077.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli O157:H7 str. TW14359] gi|290760878|gb|ADD54839.1| Ribonuclease HII [Escherichia coli O55:H7 str. CB9615] gi|320173336|gb|EFW48539.1| Ribonuclease HII [Shigella dysenteriae CDC 74-1112] gi|320180910|gb|EFW55832.1| Ribonuclease HII [Shigella boydii ATCC 9905] gi|320186605|gb|EFW61330.1| Ribonuclease HII [Shigella flexneri CDC 796-83] gi|320190291|gb|EFW64941.1| Ribonuclease HII [Escherichia coli O157:H7 str. EC1212] gi|320639989|gb|EFX09574.1| ribonuclease HII [Escherichia coli O157:H7 str. G5101] gi|320644759|gb|EFX13803.1| ribonuclease HII [Escherichia coli O157:H- str. 493-89] gi|320652915|gb|EFX21153.1| ribonuclease HII [Escherichia coli O157:H- str. H 2687] gi|320658303|gb|EFX26032.1| ribonuclease HII [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663613|gb|EFX30897.1| ribonuclease HII [Escherichia coli O55:H7 str. USDA 5905] gi|320668926|gb|EFX35721.1| ribonuclease HII [Escherichia coli O157:H7 str. LSU-61] gi|326339762|gb|EGD63570.1| Ribonuclease HII [Escherichia coli O157:H7 str. 1044] gi|326345096|gb|EGD68839.1| Ribonuclease HII [Escherichia coli O157:H7 str. 1125] gi|332095122|gb|EGJ00154.1| ribonuclease HII family protein [Shigella boydii 5216-82] gi|332097620|gb|EGJ02597.1| ribonuclease HII family protein [Shigella dysenteriae 155-74] Length = 198 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 111/182 (60%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P+ LP A AV+KGDS Sbjct: 72 RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMAVVKGDSRVP 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|145300047|ref|YP_001142888.1| ribonuclease HII [Aeromonas salmonicida subsp. salmonicida A449] gi|166225165|sp|A4SQG8|RNH2_AERS4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|142852819|gb|ABO91140.1| ribonuclease HII [Aeromonas salmonicida subsp. salmonicida A449] Length = 196 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 120/182 (65%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L G VV AA+ILDP N G+ DSKK+S KKR L+++I A+ +I Sbjct: 11 VAGVDEVGRGPLVGDVVTAAVILDPANPITGLADSKKLSEKKRLALFDEIKQKALAWAIG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID+ NI AT+ A+ AV L + P IDG P LP +A AV+KGDS+ Sbjct: 71 RASPEEIDELNILHATMLAMQRAVAGLSITPELVFIDGNRCPS-LPMEARAVVKGDSLVA 129 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKVTRD M ++P+YGF H GYPT +H ++ E+GP +R +F+P+ Sbjct: 130 AISAASILAKVTRDAEMTELDSRHPEYGFARHKGYPTPEHLAILAERGPLPAYRKSFKPV 189 Query: 205 RN 206 R+ Sbjct: 190 RH 191 >gi|323935023|gb|EGB31396.1| ribonuclease HII [Escherichia coli E1520] Length = 198 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 111/182 (60%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P+ LP A AV+KGDS Sbjct: 72 RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMAVVKGDSRVP 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P+ Sbjct: 131 EISAASILAKVTRDSEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|227890783|ref|ZP_04008588.1| ribonuclease HII [Lactobacillus salivarius ATCC 11741] gi|227867192|gb|EEJ74613.1| ribonuclease HII [Lactobacillus salivarius ATCC 11741] Length = 255 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/194 (44%), Positives = 131/194 (67%), Gaps = 8/194 (4%) Query: 20 EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E+++W +AG+DEVGRG LAGPVV AA+IL + F +NDSK++S KKREELY+K Sbjct: 61 ERDLWNKGIEYIAGVDEVGRGPLAGPVVTAAVILPHDFDIFEVNDSKQLSEKKREELYKK 120 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A+ +S+ + + ID+ NI++AT A+ A+E+L + P+ ++D +I +P Sbjct: 121 ILEKAVAVSVGLSDNNLIDEVNIYEATRLAMKQAIESLNITPQKIIVDAMTIDTKIP--Q 178 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGD+ S S+AAASI+AKVTRD LM+ + YP YGF+ + GY T +H + ++ KG Sbjct: 179 LRLIKGDAKSASVAAASIVAKVTRDHLMQFYARIYPGYGFEKNDGYGTKQHLEGLENKGV 238 Query: 194 SCIHRLTFRPLRNL 207 + IHR +F P++ + Sbjct: 239 TPIHRQSFEPVKKI 252 >gi|89098661|ref|ZP_01171543.1| ribonuclease HII [Bacillus sp. NRRL B-14911] gi|89086623|gb|EAR65742.1| ribonuclease HII [Bacillus sp. NRRL B-14911] Length = 255 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 85/190 (44%), Positives = 122/190 (64%), Gaps = 4/190 (2%) Query: 20 EKNMWP-VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 +K+ W +AG DE GRG LAGPV+ AA+IL G++DSKK+S KR+E Y++I S Sbjct: 67 KKSGWTMIAGTDEAGRGPLAGPVIAAAVILPEGFYLPGLDDSKKLSEAKRDEFYKEIMSG 126 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A + I S ID+ NI +A+ A+ A+ ++ P L D ++ D+P QA AVI Sbjct: 127 ASAVGIGRISAGEIDRINILQASKKAMLLALADMGSTPDYLLTD--AVDLDVPYQAEAVI 184 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGDS S++IAAAS+IAKVTRDR MR ++YP YGF ++GY T +H + I++ G H Sbjct: 185 KGDSKSVTIAAASVIAKVTRDRYMRELDEQYPHYGFGRNMGYGTRQHLEAIEKHGIINEH 244 Query: 198 RLTFRPLRNL 207 R +F P++ + Sbjct: 245 RKSFAPIKGM 254 >gi|218547638|ref|YP_002381429.1| ribonuclease HII [Escherichia fergusonii ATCC 35469] gi|293418068|ref|ZP_06660690.1| ribonuclease HII [Escherichia coli B185] gi|331651088|ref|ZP_08352116.1| ribonuclease HII [Escherichia coli M718] gi|331661557|ref|ZP_08362481.1| ribonuclease HII [Escherichia coli TA143] gi|226736822|sp|B7LW62|RNH2_ESCF3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|218355179|emb|CAQ87786.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia fergusonii ATCC 35469] gi|291430786|gb|EFF03784.1| ribonuclease HII [Escherichia coli B185] gi|331051542|gb|EGI23591.1| ribonuclease HII [Escherichia coli M718] gi|331061472|gb|EGI33435.1| ribonuclease HII [Escherichia coli TA143] Length = 198 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 111/182 (60%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P+ LP A AV+KGDS Sbjct: 72 RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMAVVKGDSRVP 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|259503396|ref|ZP_05746298.1| ribonuclease HII [Lactobacillus antri DSM 16041] gi|259168641|gb|EEW53136.1| ribonuclease HII [Lactobacillus antri DSM 16041] Length = 255 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 84/197 (42%), Positives = 116/197 (58%), Gaps = 3/197 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 R F E + + VAG+DEVGRG LAGPVV A+IL P+ G+ DSK+++ +R Sbjct: 57 RQRFHYERQLWQNGCRYVAGMDEVGRGPLAGPVVTCAVILGPDFDLIGVTDSKQLTRHER 116 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E+LY +I A+ +SI+ + ID+ NI+ AT DA+ AV NL P ++D +P Sbjct: 117 EQLYLRIVDEAVEVSIAVNDREAIDRLNIYAATQDAMMRAVRNLNHRPDHLIVDAVPLPF 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D P +IKGD S+S+AAASI+AK RD LMR + YP YGF ++GY T H Sbjct: 177 DYP--QTTLIKGDQKSISVAAASIVAKEYRDHLMRDYDRVYPGYGFAENMGYGTKAHLAG 234 Query: 188 IKEKGPSCIHRLTFRPL 204 + G IHR +F P+ Sbjct: 235 LARLGACPIHRRSFSPV 251 >gi|167837027|ref|ZP_02463910.1| ribonuclease HII [Burkholderia thailandensis MSMB43] Length = 214 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 87/181 (48%), Positives = 121/181 (66%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 V G+DE GRG LAGPVV AA++LDP G++DSK +S KKRE L+++I + A+ I+ Sbjct: 28 VCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAHALGYCIA 87 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS + ID NI AT+ A+ AVE L V P A IDG P L ++ A++ GD++ Sbjct: 88 SASVEEIDTLNILHATMLAMKRAVEGLAVRPTLAKIDGNRCPA-LAIRSEAIVGGDALVP 146 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI+AASI+AKVTRDR++ H+++P YGFD+H GY T +H ++ GP HR +F P+ Sbjct: 147 SISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALRAHGPCEHHRRSFAPV 206 Query: 205 R 205 R Sbjct: 207 R 207 >gi|325916627|ref|ZP_08178890.1| RNase HII [Xanthomonas vesicatoria ATCC 35937] gi|325537181|gb|EGD08914.1| RNase HII [Xanthomonas vesicatoria ATCC 35937] Length = 241 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 83/183 (45%), Positives = 120/183 (65%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII-SI 83 VAG+DE GRG LAGPV VAA++ DP+ G++DSK+++ ++RE+LY +I A+ S+ Sbjct: 33 VAGVDEAGRGPLAGPVAVAAVVFDPSKPRINGLDDSKQLTAERREQLYARIVDRALAWSV 92 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD++ Sbjct: 93 VLIASEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALD 152 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI AASI+AKVTRDRLM H ++P+Y FD H GY T H ++ GP HR +F P Sbjct: 153 RSIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYATPVHLAALRSHGPCPQHRRSFAP 212 Query: 204 LRN 206 +R Sbjct: 213 VRR 215 >gi|300902002|ref|ZP_07120029.1| ribonuclease HII [Escherichia coli MS 84-1] gi|301305319|ref|ZP_07211415.1| ribonuclease HII [Escherichia coli MS 124-1] gi|300405888|gb|EFJ89426.1| ribonuclease HII [Escherichia coli MS 84-1] gi|300839424|gb|EFK67184.1| ribonuclease HII [Escherichia coli MS 124-1] gi|315254985|gb|EFU34953.1| ribonuclease HII [Escherichia coli MS 85-1] Length = 198 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 111/182 (60%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P+ LP A AV+KGDS Sbjct: 72 RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMAVVKGDSRVP 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|317129225|ref|YP_004095507.1| ribonuclease H [Bacillus cellulosilyticus DSM 2522] gi|315474173|gb|ADU30776.1| Ribonuclease H [Bacillus cellulosilyticus DSM 2522] Length = 260 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 87/214 (40%), Positives = 127/214 (59%), Gaps = 14/214 (6%) Query: 4 NSIPERPHFELEAM-----VREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNI 53 N E+ H ELE M E+++W + G+DEVGRG LAGPVV + +IL P Sbjct: 45 NRKKEKQH-ELEKMFYEMRTYEEDLWKEGYHYIGGVDEVGRGPLAGPVVASCVILSPEFY 103 Query: 54 PFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ 112 G+ DSK++S +KREE Y I AI + I A+ + ID+ NI++AT A+ A+ L Sbjct: 104 LAGLTDSKQLSKQKREEFYCNIMEEAISVGIGIATSEEIDQINIYEATKLAMKRAIHKLS 163 Query: 113 VIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 + P L+D +P LP ++IKGD+ S+SIAA+S+IAKVTRD M + YP+Y Sbjct: 164 IEPSYLLLDAMKLPIGLP--QMSLIKGDTKSVSIAASSVIAKVTRDNYMEEIAQTYPEYR 221 Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 F ++GY T +H I++ G + HR +F P++ Sbjct: 222 FQKNMGYGTKEHLHAIEQHGITKEHRRSFAPVKE 255 >gi|119946583|ref|YP_944263.1| ribonuclease H [Psychromonas ingrahamii 37] gi|189043643|sp|A1SYU9|RNH2_PSYIN RecName: Full=Ribonuclease HII; Short=RNase HII gi|119865187|gb|ABM04664.1| RNase HII [Psychromonas ingrahamii 37] Length = 204 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 84/184 (45%), Positives = 117/184 (63%), Gaps = 4/184 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV A +ILD NN G+ DSKK+S KK L+++I A+ +++ Sbjct: 19 IAGVDEVGRGPLVGDVVTACVILDANNPISGLADSKKLSEKKLALLFDEIQEKALFVAVG 78 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 AS ID NI AT+ A+ AV+NL + P IDG P+ +PC++ V+KGD+ Sbjct: 79 RASPVEIDALNILHATMLAMQRAVDNLSISPEFVFIDGNRCPQLSMPCES--VVKGDARV 136 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASIIAKVTRDR M K+YP YGF H GYPT H I++ G + +R +F+P Sbjct: 137 AEISAASIIAKVTRDREMCELDKQYPHYGFAKHKGYPTKAHFAAIEKHGVTPEYRKSFKP 196 Query: 204 LRNL 207 ++ + Sbjct: 197 VKKV 200 >gi|260583825|ref|ZP_05851573.1| ribonuclease HII [Granulicatella elegans ATCC 700633] gi|260158451|gb|EEW93519.1| ribonuclease HII [Granulicatella elegans ATCC 700633] Length = 257 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/193 (44%), Positives = 118/193 (61%), Gaps = 3/193 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + ++ +AG+DEVGRG LAGPVV AA+IL N G +DSKK+S KREE+Y Sbjct: 64 EILAYQEGASFIAGVDEVGRGPLAGPVVAAAVILPKNIEDLGFDDSKKLSASKREEIYRL 123 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI I I ID+ NI++A+ A+ AV L++ P LID I + P Sbjct: 124 IQEKAIAIGIGIVDADIIDQVNIYQASRLAMQQAVSELKIQPDYLLIDAMKIDVNTP--Q 181 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGD+ S+SIAAASI+AK RD++M+ + YP Y F ++ GY T KH + +K KG Sbjct: 182 IGIIKGDAKSISIAAASIVAKQVRDQMMQEFDELYPGYDFSNNAGYGTPKHLEGLKSKGI 241 Query: 194 SCIHRLTFRPLRN 206 IHR TF P+++ Sbjct: 242 CPIHRKTFAPIKD 254 >gi|21230816|ref|NP_636733.1| ribonuclease HII [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769185|ref|YP_243947.1| ribonuclease HII [Xanthomonas campestris pv. campestris str. 8004] gi|39932426|sp|Q8PAW7|RNH2_XANCP RecName: Full=Ribonuclease HII; Short=RNase HII gi|81304856|sp|Q4USP6|RNH2_XANC8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|21112418|gb|AAM40657.1| ribonuclease HII [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574517|gb|AAY49927.1| ribonuclease HII [Xanthomonas campestris pv. campestris str. 8004] Length = 240 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 83/183 (45%), Positives = 118/183 (64%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII-SI 83 +AG+DE GRG LAGPV VAA++ DP G++DSK++S ++RE+LY +I A+ S+ Sbjct: 33 IAGVDEAGRGPLAGPVAVAAVVFDPAKPRINGLDDSKQLSAERREQLYARIVDRALAWSV 92 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD++ Sbjct: 93 VLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALD 152 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I AASI+AKVTRDRLMR H ++P Y FD H GY T H ++ GP HR +F P Sbjct: 153 RAIMAASIVAKVTRDRLMRELHAQHPQYRFDLHKGYSTPAHLAALQTHGPCPQHRRSFAP 212 Query: 204 LRN 206 +R Sbjct: 213 VRR 215 >gi|332527884|ref|ZP_08403921.1| ribonuclease HII [Rubrivivax benzoatilyticus JA2] gi|332112461|gb|EGJ12254.1| ribonuclease HII [Rubrivivax benzoatilyticus JA2] Length = 214 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 84/181 (46%), Positives = 117/181 (64%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DE G G LAGPVV AA+ILD G+ DSK +S ++RE L+++I + A+ +SI+ Sbjct: 24 VAGVDEAGCGPLAGPVVAAAVILDDQAPIAGLADSKALSARQRERLFDEIHARALCVSIA 83 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID NI A L A+ AVE L+++P+ ++DG +P L A AV+ GD+ Sbjct: 84 LASVEEIDTLNILHARLLAMKRAVETLRLLPKRVMVDGNRLPV-LRFPAEAVVGGDAKVP 142 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKV RDRL H ++PDYGFD H GYPT H ++ G HR +F P+ Sbjct: 143 AISAASIVAKVHRDRLCAELHARWPDYGFDGHKGYPTRVHLDALRRLGACPEHRRSFAPV 202 Query: 205 R 205 R Sbjct: 203 R 203 >gi|168215356|ref|ZP_02640981.1| ribonuclease HII [Clostridium perfringens CPE str. F4969] gi|170713265|gb|EDT25447.1| ribonuclease HII [Clostridium perfringens CPE str. F4969] Length = 272 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 97/221 (43%), Positives = 126/221 (57%), Gaps = 21/221 (9%) Query: 5 SIPERPHFELEAMVRE----KNMWP----------VAGIDEVGRGALAGPVVVAAIILDP 50 S+ R L +++E KNM+ VAG+DEVGRG LAGP+V AA+ILD Sbjct: 54 SLGNRLEKNLNNLIKEEERVKNMYLFDKSFGDYKYVAGVDEVGRGPLAGPIVSAAVILDS 113 Query: 51 ---NNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYH 106 ++I INDSKK+S KREEL E I A+ SIS + ID+ I D Sbjct: 114 SDLDDIILYINDSKKLSEHKREELSEIIKEKALSYSISMCDSKEIDEKGIGYCNNDVFIK 173 Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 A E L + P L DG I ++ + VIKGD+ S IA ASIIAKV RD +M+ HK Sbjct: 174 ACEGLSIKPDLVLSDGYLI-KNFNGENKHVIKGDTKSACIACASIIAKVYRDNIMKKYHK 232 Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 KYP Y F+ +VGY T H +KE GP+ IHR++F L+N+ Sbjct: 233 KYPQYDFEKNVGYGTKTHVDALKEVGPTEIHRMSF--LKNI 271 >gi|259417130|ref|ZP_05741049.1| ribonuclease HII [Silicibacter sp. TrichCH4B] gi|259346036|gb|EEW57850.1| ribonuclease HII [Silicibacter sp. TrichCH4B] Length = 208 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/198 (43%), Positives = 127/198 (64%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P LE + + +AG+DEVGRG LAGPV AA++LD +P G+NDSKK++ ++R Sbjct: 7 PDLSLEQVALSRGYTRIAGVDEVGRGPLAGPVTAAAVVLDLAALPEGLNDSKKLTPRRRA 66 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L +I + A +++ AS + ID HNI +A+ A+ AV L P LIDG IP DL Sbjct: 67 ALEPEIMARASYAVAHASVEEIDHHNILRASHLAMERAVAALDPQPDYLLIDGNLIPRDL 126 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A AV+KGD SLSIAAASI+AK RDR+M +++P YG++ + GYP+ +H++ + Sbjct: 127 RIPAEAVVKGDGRSLSIAAASILAKEARDRIMVDLAQQFPGYGWERNAGYPSKQHREALI 186 Query: 190 EKGPSCIHRLTFRPLRNL 207 + G + HR +F+P+ N+ Sbjct: 187 KIGVTPHHRRSFKPVHNI 204 >gi|228986980|ref|ZP_04147106.1| Ribonuclease [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772758|gb|EEM21198.1| Ribonuclease [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 257 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 92/194 (47%), Positives = 129/194 (66%), Gaps = 3/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KR+ Y++ Sbjct: 63 ENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRDRFYDE 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI I + S Q ID+ NI++AT A+ AV NL P+ LID +P +P Sbjct: 123 IKVQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPTPIP--Q 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEVHGI 240 Query: 194 SCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 241 LEEHRKSFAPIKDM 254 >gi|332522627|ref|ZP_08398879.1| ribonuclease HII [Streptococcus porcinus str. Jelinkova 176] gi|332313891|gb|EGJ26876.1| ribonuclease HII [Streptococcus porcinus str. Jelinkova 176] Length = 258 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 91/204 (44%), Positives = 129/204 (63%), Gaps = 12/204 (5%) Query: 14 LEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LE M+R E++++ +AGIDEVGRG LAGPVV A +IL N G+NDSKKI K Sbjct: 55 LEYMLRYERDVYGQGYHYIAGIDEVGRGPLAGPVVAACVILPKNCKIKGLNDSKKIPKSK 114 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGR 123 L+E+I + A+ I I ++ ID NI++AT A+ A+ +L +VIP LID Sbjct: 115 HNILFEQIKNQAVGIGIGIVDNKMIDSVNIYQATKLAMLEAINDLKKVEVIPDYLLIDAM 174 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 ++ D+ ++IKGD+ SLSIAAASI+AKVTRD+LM + YP Y F + GY T K Sbjct: 175 TL--DISIPQMSLIKGDANSLSIAAASIVAKVTRDQLMMSYDQNYPGYDFAQNAGYGTKK 232 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H +K+ G + IHR +F P++++ Sbjct: 233 HLNGLKKYGVTPIHRKSFEPIKSM 256 >gi|301025937|ref|ZP_07189421.1| ribonuclease HII [Escherichia coli MS 69-1] gi|300395736|gb|EFJ79274.1| ribonuclease HII [Escherichia coli MS 69-1] Length = 198 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 112/182 (61%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP+ G+NDSKK+S K+R L E+I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPSRPIAGLNDSKKLSEKRRLALCEEIKEKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P+ LP + AV+KGDS Sbjct: 72 RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSRVP 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|134094574|ref|YP_001099649.1| ribonuclease HII [Herminiimonas arsenicoxydans] gi|189043605|sp|A4G4T5|RNH2_HERAR RecName: Full=Ribonuclease HII; Short=RNase HII gi|133738477|emb|CAL61522.1| Ribonuclease HII (RNase HII) [Herminiimonas arsenicoxydans] Length = 211 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 85/183 (46%), Positives = 114/183 (62%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + G+DE GRG LAGPV AA+ILDP G+ DSKK+S +R+ L I + A+ SI+ Sbjct: 20 ICGVDEAGRGPLAGPVFAAAVILDPMRPIDGLCDSKKLSEVRRDALAIDIKAHALSWSIA 79 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S Q ID NI +AT+ A+ AVE L + P ALIDG P + +A A+IKGD Sbjct: 80 QCSEQEIDSLNILQATMLAMRRAVEGLHIQPTLALIDGNRCPV-MVVRAEAIIKGDDKVQ 138 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AK RD + + H YP Y FD H GYPTA H + ++E G S +HR ++ P+ Sbjct: 139 AISAASILAKTARDHALGLLHIAYPHYAFDQHKGYPTALHLERLREHGVSPVHRKSYAPV 198 Query: 205 RNL 207 R L Sbjct: 199 RAL 201 >gi|237729489|ref|ZP_04559970.1| ribonuclease HII [Citrobacter sp. 30_2] gi|226909218|gb|EEH95136.1| ribonuclease HII [Citrobacter sp. 30_2] Length = 198 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 85/182 (46%), Positives = 111/182 (60%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L+++I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIIGLNDSKKLSEKRRLALFDEIKEKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI +AT+ A+ AV L + P LIDG P LP + AV+KGDS Sbjct: 72 RAEPHEIDELNILQATMLAMQRAVAGLHIAPEYVLIDGNRCPA-LPVPSMAVVKGDSRVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H + + G + HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMAALDTVFPQYGFAQHKGYPTAFHLEKLALHGATEHHRRSFGPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|169335925|ref|ZP_02863118.1| hypothetical protein ANASTE_02360 [Anaerofustis stercorihominis DSM 17244] gi|169258663|gb|EDS72629.1| hypothetical protein ANASTE_02360 [Anaerofustis stercorihominis DSM 17244] Length = 379 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 87/177 (49%), Positives = 112/177 (63%), Gaps = 3/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AGIDEVGRG LAGPVV AA++L + INDSKK+S +KREEL EKI AI +I Sbjct: 78 IAGIDEVGRGPLAGPVVTAAVMLPKESNILYINDSKKLSSQKREELAEKIKEEAISYAIG 137 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + IDK NI AT +A+ AV+NL++ P LID + D+ ++F +KGD Sbjct: 138 IKDNGIIDKINILNATKEAMLEAVDNLKIKPEILLIDAVHLNTDIKQESF--VKGDENIY 195 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SI AASI+AKV RD+LM K YP+YGF+ + GY T H + IK G IHR +F Sbjct: 196 SIGAASILAKVYRDKLMEDYAKDYPEYGFEKNKGYGTFDHIEAIKNNGLCPIHRSSF 252 >gi|154503287|ref|ZP_02040347.1| hypothetical protein RUMGNA_01111 [Ruminococcus gnavus ATCC 29149] gi|153795954|gb|EDN78374.1| hypothetical protein RUMGNA_01111 [Ruminococcus gnavus ATCC 29149] Length = 250 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 88/177 (49%), Positives = 115/177 (64%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG LAGPVV AA+IL + +NDSKK+S K+REELY++I AI I I Sbjct: 70 ICGIDEVGRGPLAGPVVAAAVILPKDAEILYLNDSKKLSAKRREELYDEIQEKAIAIGIG 129 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI +AT +A+ A+ L V P L D +IPE + Q +IKGD+ S+ Sbjct: 130 MAGPARIDEINILQATYEAMRQAIGQLSVEPEVLLNDAVTIPEVVIPQ-VPIIKGDAKSV 188 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAAS+IAKVTRDRLM + YGF + GY +A+H +++ GP+ IHR TF Sbjct: 189 SIAAASVIAKVTRDRLMEEYDQVLAGYGFADNKGYGSAEHIAALRKLGPTPIHRRTF 245 >gi|168216993|ref|ZP_02642618.1| ribonuclease HII [Clostridium perfringens NCTC 8239] gi|182380928|gb|EDT78407.1| ribonuclease HII [Clostridium perfringens NCTC 8239] Length = 272 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 97/221 (43%), Positives = 126/221 (57%), Gaps = 21/221 (9%) Query: 5 SIPERPHFELEAMVRE----KNMWP----------VAGIDEVGRGALAGPVVVAAIILDP 50 S+ R L +++E KNM+ VAG+DEVGRG LAGP+V AA+ILD Sbjct: 54 SLGNRLEKNLNNLIKEEERVKNMYLFDKSFGDYKYVAGVDEVGRGPLAGPIVSAAVILDS 113 Query: 51 ---NNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYH 106 ++I INDSKK+S KREEL E I A+ SIS + ID+ I D Sbjct: 114 SDLDDIILYINDSKKLSEHKREELSEIIKEKALSYSISMCDSKEIDEKGIGYCNNDVFIK 173 Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 A E L + P L DG I ++ + VIKGD+ S IA ASIIAKV RD +M+ HK Sbjct: 174 ACEGLSIKPDLVLSDGYLI-KNFNGENKHVIKGDTKSACIACASIIAKVYRDNIMKEYHK 232 Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 KYP Y F+ +VGY T H +KE GP+ IHR++F L+N+ Sbjct: 233 KYPQYDFEKNVGYGTKTHVDALKEVGPTEIHRMSF--LKNI 271 >gi|289670236|ref|ZP_06491311.1| ribonuclease HII [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 242 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 83/182 (45%), Positives = 119/182 (65%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII-SI 83 VAG+DE GRG LAGPV VAA++ DP+ G++DSK+++ ++RE+LY +I A+ S+ Sbjct: 33 VAGVDEAGRGPLAGPVAVAAVVFDPSKPRINGLDDSKQLTAERREQLYARIVDRALAWSV 92 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD++ Sbjct: 93 VLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALD 152 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I AASI+AKVTRDRLM H ++P+Y FD H GY T H +K GP HR +F P Sbjct: 153 RAIMAASIVAKVTRDRLMHELHTQHPEYRFDQHKGYSTPVHLAALKTHGPCPQHRRSFAP 212 Query: 204 LR 205 +R Sbjct: 213 VR 214 >gi|163782691|ref|ZP_02177688.1| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Hydrogenivirga sp. 128-5-R1-1] gi|159882264|gb|EDP75771.1| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Hydrogenivirga sp. 128-5-R1-1] Length = 190 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 85/188 (45%), Positives = 118/188 (62%), Gaps = 8/188 (4%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 E+ W VAG+DE GRG LAGPVV +A+IL P PF DSKK+S K+REELYE I Sbjct: 5 EEKFWREGLLVAGVDEAGRGPLAGPVVASAVILPPFTEPFLKGDSKKLSRKEREELYELI 64 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 +A+ + + ID+ NI++AT A+ A+++L+ P +I E+ C Sbjct: 65 KETALAVGTAVVDSAVIDRINIYQATKLAMKRALDDLK-HPFDVVISDYVKLEEFNC--L 121 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 ++KGD SLS A AS++AKV RDR+M H+ YP+Y F H GYPT KH+++IK+ G + Sbjct: 122 PLVKGDERSLSCACASVVAKVLRDRIMERFHEVYPEYEFVKHKGYPTKKHRELIKKFGIT 181 Query: 195 CIHRLTFR 202 IHR +FR Sbjct: 182 EIHRRSFR 189 >gi|187251038|ref|YP_001875520.1| ribonuclease H [Elusimicrobium minutum Pei191] gi|186971198|gb|ACC98183.1| Ribonuclease H [Elusimicrobium minutum Pei191] Length = 210 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 93/208 (44%), Positives = 121/208 (58%), Gaps = 8/208 (3%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF---GINDSKK 62 + E F+ E + +KN + GIDE GRG LAGPVV A+ P I +NDSKK Sbjct: 1 MNELQRFDCEIL--QKNSCALIGIDEAGRGPLAGPVVACAVCA-PKEIYHLFEDVNDSKK 57 Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-ALI 120 ++ KRE++Y +I I + AS + ID+ NI +AT A+ A + I + AL+ Sbjct: 58 LTDVKREKIYARINGYKIAYGVGFASAKEIDEINILQATFLAMRRACQKFLDINEALALV 117 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG +D VI GD+ S SIA AS+IAKV RDR MR AH+ YP YGFD H GY Sbjct: 118 DGNHKIKDFLLPQQTVIDGDAKSFSIAMASVIAKVHRDRYMRKAHELYPVYGFDGHKGYG 177 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNLS 208 + KH IKE GP HR+TF PL+NL+ Sbjct: 178 SGKHIAAIKEHGPCKEHRMTFAPLKNLN 205 >gi|228935151|ref|ZP_04097978.1| Ribonuclease [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824516|gb|EEM70321.1| Ribonuclease [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 257 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 93/194 (47%), Positives = 127/194 (65%), Gaps = 3/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +REK + +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KRE Y++ Sbjct: 63 ENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYDE 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI I + S Q ID+ NI++AT A+ AV NL LID +P +P Sbjct: 123 IKEKAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTTEYLLIDAMKLPTPIP--Q 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 181 TSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHGV 240 Query: 194 SCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 241 LEEHRKSFAPIKDM 254 >gi|157964267|ref|YP_001499091.1| ribonuclease HII [Rickettsia massiliae MTU5] gi|189043648|sp|A8F0V8|RNH2_RICM5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|157844043|gb|ABV84544.1| Ribonuclease HII [Rickettsia massiliae MTU5] Length = 194 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 88/177 (49%), Positives = 113/177 (63%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 VAGIDE GRG LAGPVV +A+I+D NI GI DSKK+S K RE LYE+ITS+ + + + Sbjct: 18 VAGIDEAGRGPLAGPVVASAVIIDNANIITGIKDSKKLSKKTRELLYEQITSNYVWATAI 77 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 SH ID NI +AT A AV NL + P L+DG +D + ++I GD++SLS Sbjct: 78 ISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKDE--RFVSIINGDNLSLS 135 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AKVTRDRLM + P Y + + GY T +H + I G S HR +FR Sbjct: 136 IAAASIVAKVTRDRLMLDLSAELPQYLWHKNSGYGTKEHIEAINIHGLSPYHRRSFR 192 >gi|269798033|ref|YP_003311933.1| ribonuclease HII/HIII [Veillonella parvula DSM 2008] gi|269094662|gb|ACZ24653.1| ribonuclease HII/HIII [Veillonella parvula DSM 2008] Length = 265 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/197 (43%), Positives = 130/197 (65%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ E M ++ ++ VAG+DEVGRG +AGPV VAA+IL P + G+NDSKK++ +KRE L Sbjct: 63 YDYEGMFYDQGIYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREAL 122 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ +S S + ID+ NI++ T A+Y A+ L V + + D +P DL Sbjct: 123 YDIIMDEAVAVSCISYGPEKIDELNIYEVTRQAMYEAIRTLSVPAEAVVADAMKLP-DLT 181 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGDS S +IAAASIIAKVTRDR M+ ++P YGF H GY T H++ I++ Sbjct: 182 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDDEFPGYGFGIHKGYYTELHKEAIEQ 241 Query: 191 KGPSCIHRLTFRPLRNL 207 +G + +HR +F P++++ Sbjct: 242 QGVTPLHRKSFEPIKSI 258 >gi|293408275|ref|ZP_06652115.1| ribonuclease HII [Escherichia coli B354] gi|331671689|ref|ZP_08372487.1| ribonuclease HII [Escherichia coli TA280] gi|291472526|gb|EFF15008.1| ribonuclease HII [Escherichia coli B354] gi|331071534|gb|EGI42891.1| ribonuclease HII [Escherichia coli TA280] Length = 198 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 112/182 (61%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP+ G+NDSKK+S K+R L E+I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPSRPIAGLNDSKKLSEKRRLALCEEIKEKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P+ LP + AV+KGDS Sbjct: 72 RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSRVP 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|323964924|gb|EGB60390.1| ribonuclease HII [Escherichia coli M863] gi|327255162|gb|EGE66765.1| ribonuclease HII family protein [Escherichia coli STEC_7v] Length = 198 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 111/182 (60%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPTRPIAGLNDSKKLSEKRRLALCEEIKEKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P+ LP + AV+KGDS Sbjct: 72 RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSRVP 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|289550965|ref|YP_003471869.1| Ribonuclease HII [Staphylococcus lugdunensis HKU09-01] gi|289180497|gb|ADC87742.1| Ribonuclease HII [Staphylococcus lugdunensis HKU09-01] Length = 255 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 87/185 (47%), Positives = 118/185 (63%), Gaps = 7/185 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA---IIS 82 + GIDEVGRG LAGPVV A+IL+ N+ G+NDSKK+S R +L + + ++ Sbjct: 74 ICGIDEVGRGPLAGPVVACAVILNANHHYLGLNDSKKVSAVNRAQLNQDLMANVRGYAYG 133 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+SA+ ID+ NI++AT A+ A+ LQV P LID SI D A+IKGD+ Sbjct: 134 IASAAE--IDQLNIYRATQVAMQRAINQLQVRPTHLLIDAMSI--DSTISQTAIIKGDAK 189 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 S+SIAAASI+AK RD LMR + YP YGFD +VGY T H +K+ G + IHR TF Sbjct: 190 SVSIAAASIMAKEYRDHLMRDYAQVYPYYGFDKNVGYGTKAHLAGLKQYGVTPIHRRTFE 249 Query: 203 PLRNL 207 P++++ Sbjct: 250 PVKSM 254 >gi|225019936|ref|ZP_03709128.1| hypothetical protein CLOSTMETH_03890 [Clostridium methylpentosum DSM 5476] gi|224947300|gb|EEG28509.1| hypothetical protein CLOSTMETH_03890 [Clostridium methylpentosum DSM 5476] Length = 324 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 87/184 (47%), Positives = 114/184 (61%), Gaps = 2/184 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 RE + G+DE GRG LAGPV AA IL + GINDSKK++ KKRE LYE+I Sbjct: 8 REAGAEVLCGVDEAGRGPLAGPVYAAACILPLDAEIEGINDSKKLTEKKREALYEQIRER 67 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A+ +++AS + ID NI +AT A+ AVE L++ P LIDG P D+ + VI Sbjct: 68 ALDYCVATASVEEIDSINILQATFLAMRRAVEGLRLRPGLVLIDGNKNP-DVGVHSRCVI 126 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD+ S +IAAASI+AKV RDR M+ +YP+Y F H GY T H + + E G S +H Sbjct: 127 KGDATSANIAAASILAKVERDRCMQALDAEYPEYCFAKHKGYGTKLHTEKLLEYGISPVH 186 Query: 198 RLTF 201 R +F Sbjct: 187 RRSF 190 >gi|163856833|ref|YP_001631131.1| ribonuclease HII [Bordetella petrii DSM 12804] gi|163260561|emb|CAP42863.1| rnhB [Bordetella petrii] Length = 187 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 83/182 (45%), Positives = 112/182 (61%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DE GRG LAG V AA+ILDP G+ DSK ++ ++REEL I A+ ++ Sbjct: 1 MAGVDEAGRGPLAGGVYAAAVILDPGRPVDGLADSKVLTAERREELAAHIQERALAWCVA 60 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SA+ ID NI +ATL A+ AV+ L P+ A++DG P L C VIKGD++ Sbjct: 61 SATVLEIDTLNILRATLLAMQRAVDGLGQAPQVAMVDGNQAPT-LRCTVQTVIKGDALVP 119 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AK RD ++ H YP YGFD H GY TA H Q ++E GP HR +F P+ Sbjct: 120 AISAASILAKTARDADLQRLHALYPQYGFDQHKGYGTALHMQRLREHGPCPEHRRSFAPV 179 Query: 205 RN 206 R Sbjct: 180 RE 181 >gi|319943812|ref|ZP_08018093.1| ribonuclease HII [Lautropia mirabilis ATCC 51599] gi|319743045|gb|EFV95451.1| ribonuclease HII [Lautropia mirabilis ATCC 51599] Length = 199 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 82/180 (45%), Positives = 114/180 (63%), Gaps = 1/180 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DE GRG LAGPVV AA+IL P++ G+ DSKK+S ++RE L +I A+ +++ Sbjct: 13 IAGVDEAGRGPLAGPVVAAAVILSPDHPIEGLRDSKKLSARRRETLANEIREKALAFAVA 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS + ID+ NI ATL A+ A++ LQ P IDG P+ + VI GD Sbjct: 73 SASVEEIDRLNILHATLLAMTRAIQGLQPQPLHVRIDGNRAPKLEGLRVETVIGGDDQDP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AK RD LM +++P YGF+ H+GY TA H ++E GP IHR +F P+ Sbjct: 133 AIAAASILAKTVRDHLMLQYAEQFPAYGFERHMGYGTAVHMAALREHGPCEIHRRSFAPV 192 >gi|152976203|ref|YP_001375720.1| ribonuclease HII [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189043565|sp|A7GRG7|RNH2_BACCN RecName: Full=Ribonuclease HII; Short=RNase HII gi|152024955|gb|ABS22725.1| Ribonuclease H [Bacillus cytotoxicus NVH 391-98] Length = 259 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 92/194 (47%), Positives = 127/194 (65%), Gaps = 3/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +R++ + +AGIDEVGRG LAGPVV AA+IL G+NDSKK+S KRE Y++ Sbjct: 63 ENALRKQGISYIAGIDEVGRGPLAGPVVTAAVILPEEFYIPGLNDSKKLSEAKRELFYDE 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI I + S Q ID+ NI++AT A+ AV NL P LID +P +P + Sbjct: 123 IREKAIAIGVGIVSPQVIDEMNIYQATKRAMLDAVANLSYAPEHLLIDAMKLPTSIPQTS 182 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++KGD+ S+SI+AASIIAKVTRDR+M+ K YP+YGF+ H+GY T +H + I+ G Sbjct: 183 --IVKGDAKSISISAASIIAKVTRDRMMKELGKTYPEYGFEKHMGYGTKQHLEAIETYGV 240 Query: 194 SCIHRLTFRPLRNL 207 HR TF P++++ Sbjct: 241 LEEHRKTFAPIKDM 254 >gi|322373051|ref|ZP_08047587.1| ribonuclease HII [Streptococcus sp. C150] gi|321278093|gb|EFX55162.1| ribonuclease HII [Streptococcus sp. C150] Length = 260 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 88/201 (43%), Positives = 125/201 (62%), Gaps = 9/201 (4%) Query: 14 LEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LE M+ EK+++ +AG+DEVGRG LAGPVV AA+IL G+NDSKKI K Sbjct: 59 LEMMLSYEKSLYAQGVELIAGVDEVGRGPLAGPVVAAAVILPKLCKIKGLNDSKKIPKSK 118 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 E +Y+++ A+ + I + ID NI++AT A+ A+E L P LID S+ Sbjct: 119 HEAIYKQVMKEAVAVGIGIKDNHVIDDVNIYEATKLAMAEAIEKLSPKPEHLLIDAMSL- 177 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 DLP ++IKGD+ SLSIAAASI+AKVTRD++M +++P Y FD + GY T H Sbjct: 178 -DLPIGQTSIIKGDANSLSIAAASIVAKVTRDKMMADYDQEFPGYAFDQNAGYGTKNHLS 236 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G + IHR +F P++++ Sbjct: 237 GIDKFGVTPIHRRSFEPIKSI 257 >gi|213610034|ref|ZP_03369860.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 184 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 84/179 (46%), Positives = 109/179 (60%), Gaps = 2/179 (1%) Query: 29 IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSAS 87 +DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LY++I A+ S+ A Sbjct: 1 MDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLSLYDEIKEKALSWSLGRAE 60 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 ID+ NI AT+ A+ AV L + P LIDG PE LP + AV+KGDS I+ Sbjct: 61 AHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPE-LPVPSMAVVKGDSRVAEIS 119 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 AASI+AKVTRD M +P YGF H GYPTA H + + + G + HR +F P++ Sbjct: 120 AASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAQYGATAHHRRSFAPVKR 178 >gi|325680872|ref|ZP_08160410.1| ribonuclease HII [Ruminococcus albus 8] gi|324107652|gb|EGC01930.1| ribonuclease HII [Ruminococcus albus 8] Length = 204 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 87/177 (49%), Positives = 115/177 (64%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 V G DE GRG LAG V AA++ D + + GINDSKK++ KKREEL+E I A+ SI Sbjct: 17 VCGCDEAGRGPLAGDVFAAAVVFDKDTVIEGINDSKKLTAKKREELFEVIVEKALDFSIQ 76 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A+ + I+K NI + A+ AVE++++ P LIDG PE L C A AV+KGD+ S Sbjct: 77 CATVEEIEKFNILNCAMLAMKRAVESMKIKPDVCLIDGNKTPE-LECDAIAVVKGDAQSQ 135 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +IAAASI+AKV RDR M KK+P++ F+ H GY T H Q+I + G S IHR +F Sbjct: 136 AIAAASILAKVARDRYMLEMAKKFPEWQFEKHKGYGTKLHYQMIDKYGESPIHRPSF 192 >gi|319786395|ref|YP_004145870.1| ribonuclease H [Pseudoxanthomonas suwonensis 11-1] gi|317464907|gb|ADV26639.1| Ribonuclease H [Pseudoxanthomonas suwonensis 11-1] Length = 233 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 84/188 (44%), Positives = 115/188 (61%), Gaps = 1/188 (0%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 ++ VAG+DE GRG LAGPV VAA++LDP G++DSKK+SH +RE+LY +I A Sbjct: 25 DRKQLRVAGVDEAGRGPLAGPVAVAAVVLDPRRRIRGLDDSKKLSHAQREDLYPRIVERA 84 Query: 80 II-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + + ID+ NI +ATL+ + V L + A IDG +P LPC A A+I Sbjct: 85 LAWHVELVPVDEIDRLNILQATLEGMRRCVLALGEHAQLARIDGNMLPRSLPCMAEAIIG 144 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD++ +I AASI+AKV+RDRLM H+++P YGF H GY T H + GP HR Sbjct: 145 GDALEPAIMAASILAKVSRDRLMCQLHEEFPVYGFAEHKGYATPAHLAALASHGPCVHHR 204 Query: 199 LTFRPLRN 206 +F P+R Sbjct: 205 RSFAPVRQ 212 >gi|293394717|ref|ZP_06639009.1| ribonuclease HII [Serratia odorifera DSM 4582] gi|291422843|gb|EFE96080.1| ribonuclease HII [Serratia odorifera DSM 4582] Length = 202 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 86/182 (47%), Positives = 111/182 (60%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPARPIVGLADSKKLSEKRRLALYDEIIDKAQAWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID NI AT+ A+ AV L + P LIDG P+ LP ++ AV+KGDS Sbjct: 73 RAEPAEIDSLNILHATMLAMQRAVAGLAITPDLVLIDGNRCPK-LPMRSQAVVKGDSRVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M +P YGF H GYPTA H + + + G + HR +F P+ Sbjct: 132 EISAASILAKVTRDREMAELDLSFPAYGFAQHKGYPTAFHLEKLAQYGATQHHRRSFAPV 191 Query: 205 RN 206 R Sbjct: 192 RR 193 >gi|152995315|ref|YP_001340150.1| ribonuclease H [Marinomonas sp. MWYL1] gi|189043694|sp|A6VUT6|RNH2_MARMS RecName: Full=Ribonuclease HII; Short=RNase HII gi|150836239|gb|ABR70215.1| Ribonuclease H [Marinomonas sp. MWYL1] Length = 199 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 88/183 (48%), Positives = 121/183 (66%), Gaps = 1/183 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG DE GRG LAG VV AA+ILDP G+ DSKK+S KKRE L+ +I A+ I+ Sbjct: 14 LAGTDEAGRGPLAGEVVAAAVILDPAQPITGLADSKKLSEKKREALFVEIQEKALAYGIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A+ + ID+ NI A++ A+ AV L + P L+DG IP +LPC A AV+KGD+ Sbjct: 74 RATIEEIDELNILHASMLAMSRAVALLSIEPEYVLVDGNRIPPNLPCSAEAVVKGDARHA 133 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKVTRDR + + YP+YGF+ H GYPTA H + I+ G + IHR +F P+ Sbjct: 134 AISAASILAKVTRDRDIVQVAQIYPEYGFEKHKGYPTALHLEAIRLHGITPIHRRSFGPV 193 Query: 205 RNL 207 + + Sbjct: 194 KKI 196 >gi|238923885|ref|YP_002937401.1| ribonuclease H [Eubacterium rectale ATCC 33656] gi|238875560|gb|ACR75267.1| ribonuclease H [Eubacterium rectale ATCC 33656] Length = 253 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 85/177 (48%), Positives = 115/177 (64%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG LAGPVV A+IL + INDSKK++ KR+ELY+ I A+ + I Sbjct: 73 ICGIDEVGRGPLAGPVVACAVILPKDCDILYINDSKKLTAAKRDELYDVIMEKAVSVGIG 132 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 ASH+ ID+ NI +AT +A+ A+ L P L D +IP + + +IKGD+ S+ Sbjct: 133 MASHERIDEINILQATYEAMRQAIGKLDPAPDLTLNDAVTIP-GVDIKQVPIIKGDAKSI 191 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SI AASI+AKVTRDR+M YP YGF S+ GY +A+H + +K+ GPS IHR +F Sbjct: 192 SIGAASIVAKVTRDRMMVEYDNIYPGYGFASNKGYGSAEHIKALKKIGPSPIHRASF 248 >gi|91975688|ref|YP_568347.1| ribonuclease HII [Rhodopseudomonas palustris BisB5] gi|122969169|sp|Q13BU3|RNH2_RHOPS RecName: Full=Ribonuclease HII; Short=RNase HII gi|91682144|gb|ABE38446.1| RNase HII [Rhodopseudomonas palustris BisB5] Length = 298 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 87/196 (44%), Positives = 130/196 (66%), Gaps = 1/196 (0%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P F E + ++ +WPVAG DE GRG LAGPVV AA++LDP +P G++DSK+++ +R Sbjct: 70 QPSFRRERALIKRGVWPVAGCDEAGRGPLAGPVVAAAVVLDPKRVPKGLDDSKRLTADRR 129 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 EEL+E+I ++A ++++ AS + I++ NI +A+L A+ AV L +P+ +DGR Sbjct: 130 EELFEEICATAQVAVAYASPERINRDNILRASLWALTRAVHALPDLPQHVFVDGRDRLAT 189 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 C++ AV+ GD + SIAAASIIAKV+RDRLM ++ P YGF+SH GY +H + Sbjct: 190 R-CESEAVVGGDGLIASIAAASIIAKVSRDRLMCRLAQECPGYGFESHKGYGVPEHLAAL 248 Query: 189 KEKGPSCIHRLTFRPL 204 GP+ HR F P+ Sbjct: 249 ARLGPTVHHRRFFAPV 264 >gi|118594900|ref|ZP_01552247.1| ribonuclease HII [Methylophilales bacterium HTCC2181] gi|118440678|gb|EAV47305.1| ribonuclease HII [Methylophilales bacterium HTCC2181] Length = 188 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 84/188 (44%), Positives = 118/188 (62%), Gaps = 1/188 (0%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81 M + G+DE GRG LAGPV AA+ILDP+ G+ DSKK+S K+ +Y I A + Sbjct: 1 MIMICGVDEAGRGPLAGPVFAAAVILDPSRPIPGLKDSKKLSPKQLLSVYLDIMKCAWEV 60 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S ++A+ Q ID+ NI +A+L A+ A+ L IP LIDG+ P+ + AV+KGD+ Sbjct: 61 SSATATPQEIDQINILQASLLAMKRAIYQLSNIPDRILIDGQHCPDIQSMEMKAVVKGDA 120 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I+AASIIAKV RD+ M ++P+Y F H GYPT +H ++I+E G S +HR TF Sbjct: 121 KHQEISAASIIAKVERDKYMLELDHQFPEYNFKQHKGYPTKEHIRLIREFGVSPVHRKTF 180 Query: 202 RPLRNLSV 209 RP+ L + Sbjct: 181 RPVSELLI 188 >gi|134299893|ref|YP_001113389.1| ribonuclease HII [Desulfotomaculum reducens MI-1] gi|189043592|sp|A4J661|RNH2_DESRM RecName: Full=Ribonuclease HII; Short=RNase HII gi|134052593|gb|ABO50564.1| Ribonuclease H [Desulfotomaculum reducens MI-1] Length = 198 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 82/184 (44%), Positives = 119/184 (64%), Gaps = 4/184 (2%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSA 86 G+DE GRG+ + +A ILDP + G+ DSKK+S +KRE L E+I A+ I+ A Sbjct: 6 GVDETGRGSCISGIYASACILDPAHPIEGLRDSKKLSARKREILAEEIKQYALSWCIAQA 65 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSISLS 145 S + +++ N+H ATL A+ A+E L + +DG +PE D+P +A ++KGD + + Sbjct: 66 SLEEVEQLNVHHATLLAMKRAIEGLSIRANKVYVDGIHLPEVDIPAEA--IVKGDDLIPA 123 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AKV RD M H+KYP YGF+SH GY T H++ +K+ GPS IHR T+ P+R Sbjct: 124 ISAASILAKVARDGAMLEYHEKYPQYGFNSHKGYLTKAHREALKKYGPSPIHRKTYAPIR 183 Query: 206 NLSV 209 L V Sbjct: 184 ELLV 187 >gi|46201021|ref|ZP_00055903.2| COG0164: Ribonuclease HII [Magnetospirillum magnetotacticum MS-1] Length = 201 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 85/183 (46%), Positives = 113/183 (61%), Gaps = 5/183 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYEKITSSAII 81 V GIDEVGRG LAGPVV AA+ILD +P + +DSKK+S + REEL E + ++A I Sbjct: 14 VCGIDEVGRGPLAGPVVAAAVILDAARLPKALLDRLDDSKKLSKRNREELAELVPATATI 73 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 AS ID+ NI +AT A+ A + L AL+DG P LPC V+ GD Sbjct: 74 GFGEASVDEIDRLNILQATFLAMRRAYDALGRECGHALVDGNRPPR-LPCPIRCVVGGDG 132 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ISLSIAAAS++AKV RD LM +P++G++ + GY TA+H +K GP+ HR +F Sbjct: 133 ISLSIAAASVVAKVRRDGLMAELALAHPEFGWERNAGYGTAEHLDALKRLGPTPHHRRSF 192 Query: 202 RPL 204 P+ Sbjct: 193 APV 195 >gi|260889965|ref|ZP_05901228.1| ribonuclease HII [Leptotrichia hofstadii F0254] gi|260860571|gb|EEX75071.1| ribonuclease HII [Leptotrichia hofstadii F0254] Length = 198 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 85/187 (45%), Positives = 116/187 (62%), Gaps = 7/187 (3%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSS 78 EK V G+DE GRG LAGPVV A+I+ + INDSKK++ KKRE L+E I + Sbjct: 5 EKYNKIVVGVDEAGRGPLAGPVVAGAVIVIQDFPELQEINDSKKLTEKKRERLFEAIEKN 64 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA----LIDGRSIPEDLPCQAF 134 I+ I AS + ID+ NI AT A+ A+ QV +SA L+DG + + + Sbjct: 65 CIVGIGIASEKEIDEMNILNATFLAMRRAIN--QVAEKSAFDIVLVDGNHLIREYEGEQE 122 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 ++KGDS SL+IA ASI+AKVTRDR++ K++P+Y F+ H GY T KH+Q++ EKG Sbjct: 123 CIVKGDSKSLAIATASIVAKVTRDRILCEIAKEFPEYEFEKHKGYGTKKHRQILLEKGAC 182 Query: 195 CIHRLTF 201 HR TF Sbjct: 183 KYHRKTF 189 >gi|120610517|ref|YP_970195.1| ribonuclease HII [Acidovorax citrulli AAC00-1] gi|189043527|sp|A1TN83|RNH2_ACIAC RecName: Full=Ribonuclease HII; Short=RNase HII gi|120588981|gb|ABM32421.1| RNase HII [Acidovorax citrulli AAC00-1] Length = 240 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 81/181 (44%), Positives = 118/181 (65%), Gaps = 4/181 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DE GRG LAGPVV AA+ILD G+ DSK ++ +RE L+++I + A+ S++ Sbjct: 23 VAGVDEAGRGPLAGPVVAAAVILDELQPIEGLADSKTLTAARREALFDEIRAKALCCSVA 82 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 A+ + ID NI +AT+ A+ AV L++ P L+DG +P D+P +A ++KGD++ Sbjct: 83 EATVEEIDTLNILQATMLAMRRAVAGLRLKPVRVLVDGNRLPPLDVPAEA--IVKGDALV 140 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKVTRDR H+ YP YGF SH GY TA+H ++ G HR +F P Sbjct: 141 QAISAASILAKVTRDRWCAQLHEAYPHYGFASHKGYGTAEHMAALQAHGACPEHRRSFAP 200 Query: 204 L 204 + Sbjct: 201 V 201 >gi|313884900|ref|ZP_07818652.1| ribonuclease HII [Eremococcus coleocola ACS-139-V-Col8] gi|312619591|gb|EFR31028.1| ribonuclease HII [Eremococcus coleocola ACS-139-V-Col8] Length = 279 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 89/199 (44%), Positives = 123/199 (61%), Gaps = 10/199 (5%) Query: 17 MVREKNMWP------VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKRE 69 +V E ++W +AGIDEVGRG LAGPVV AA+IL + F GINDSK++SH++R Sbjct: 76 LVYENDLWQNQSFKYIAGIDEVGRGPLAGPVVTAAVILPQDCAAFIGINDSKQLSHQQRV 135 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E I +A+ SI+ S Q ID+ NI++AT + AV NL + P L+D I Sbjct: 136 SYAEIIKENALAYSIAIGSAQLIDQVNIYQATRQMMVKAVANLAIQPDYLLLDAMQIESS 195 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 +P ++ +IKGD SLSIAAASIIAKV RD++M ++P Y F + GY T H + Sbjct: 196 IPQRS--IIKGDQKSLSIAAASIIAKVYRDQIMDQYALEFPYYDFQHNKGYGTQNHLAGL 253 Query: 189 KEKGPSCIHRLTFRPLRNL 207 E G S IHR +F P++++ Sbjct: 254 NEFGYSPIHRRSFEPVKSM 272 >gi|255657930|ref|ZP_05403339.1| ribonuclease HII [Mitsuokella multacida DSM 20544] gi|260850123|gb|EEX70130.1| ribonuclease HII [Mitsuokella multacida DSM 20544] Length = 259 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 94/186 (50%), Positives = 132/186 (70%), Gaps = 6/186 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DE GRG LAGPV VAA+IL P+++ +NDSKK+S K REEL+++I AI + Sbjct: 72 VAGVDEAGRGPLAGPVSVAAVIL-PHDLCLPKLNDSKKLSAKVREELFDEIQEKAIAVGT 130 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED-LPCQAFAVIKGDSI 142 + Q ID+ NI++AT++ +Y A+ +LQ P+ LID ++P D LP + ++IKGD+ Sbjct: 131 ALIDAQTIDRVNIYQATINGMYEAIFSLQPAPQEVLID--AVPLDRLPMPSESIIKGDAK 188 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 S SI+AASIIAKVTRDRLM K YP+YGF H GY TA+H + +K+ GP IHR +F Sbjct: 189 SASISAASIIAKVTRDRLMDEYDKIYPEYGFAQHKGYGTAQHIEALKKYGPCPIHRRSFE 248 Query: 203 PLRNLS 208 P+R+++ Sbjct: 249 PVRSIA 254 >gi|110640402|ref|YP_668130.1| ribonuclease HII [Escherichia coli 536] gi|170680885|ref|YP_001742311.1| ribonuclease HII [Escherichia coli SMS-3-5] gi|191172810|ref|ZP_03034347.1| ribonuclease HII [Escherichia coli F11] gi|215485344|ref|YP_002327775.1| ribonuclease HII [Escherichia coli O127:H6 str. E2348/69] gi|218688058|ref|YP_002396270.1| ribonuclease HII [Escherichia coli ED1a] gi|218703437|ref|YP_002410956.1| ribonuclease HII [Escherichia coli UMN026] gi|293403252|ref|ZP_06647349.1| rnhB [Escherichia coli FVEC1412] gi|298378788|ref|ZP_06988672.1| ribonuclease HII [Escherichia coli FVEC1302] gi|300900779|ref|ZP_07118923.1| ribonuclease HII [Escherichia coli MS 198-1] gi|300938590|ref|ZP_07153323.1| ribonuclease HII [Escherichia coli MS 21-1] gi|300984943|ref|ZP_07177208.1| ribonuclease HII [Escherichia coli MS 200-1] gi|306815218|ref|ZP_07449367.1| ribonuclease HII [Escherichia coli NC101] gi|312966320|ref|ZP_07780546.1| ribonuclease HII family protein [Escherichia coli 2362-75] gi|331645326|ref|ZP_08346437.1| ribonuclease HII [Escherichia coli M605] gi|331661254|ref|ZP_08362186.1| ribonuclease HII [Escherichia coli TA206] gi|331681568|ref|ZP_08382205.1| ribonuclease HII [Escherichia coli H299] gi|123049490|sp|Q0TLF0|RNH2_ECOL5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|226736820|sp|B7N850|RNH2_ECOLU RecName: Full=Ribonuclease HII; Short=RNase HII gi|226736821|sp|B1LGY5|RNH2_ECOSM RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807974|sp|B7UJ84|RNH2_ECO27 RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807976|sp|B7MP43|RNH2_ECO81 RecName: Full=Ribonuclease HII; Short=RNase HII gi|110341994|gb|ABG68231.1| ribonuclease HII [Escherichia coli 536] gi|170518603|gb|ACB16781.1| ribonuclease HII [Escherichia coli SMS-3-5] gi|190906960|gb|EDV66562.1| ribonuclease HII [Escherichia coli F11] gi|215263416|emb|CAS07736.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli O127:H6 str. E2348/69] gi|218425622|emb|CAR06408.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli ED1a] gi|218430534|emb|CAR11400.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli UMN026] gi|222032013|emb|CAP74752.1| ribonuclease HII [Escherichia coli LF82] gi|281177408|dbj|BAI53738.1| ribonuclease HII [Escherichia coli SE15] gi|284919958|emb|CBG33013.1| ribonuclease HII [Escherichia coli 042] gi|291430167|gb|EFF03181.1| rnhB [Escherichia coli FVEC1412] gi|298281122|gb|EFI22623.1| ribonuclease HII [Escherichia coli FVEC1302] gi|300306593|gb|EFJ61113.1| ribonuclease HII [Escherichia coli MS 200-1] gi|300355728|gb|EFJ71598.1| ribonuclease HII [Escherichia coli MS 198-1] gi|300456472|gb|EFK19965.1| ribonuclease HII [Escherichia coli MS 21-1] gi|305850880|gb|EFM51335.1| ribonuclease HII [Escherichia coli NC101] gi|309700391|emb|CBI99679.1| ribonuclease HII [Escherichia coli ETEC H10407] gi|312289563|gb|EFR17457.1| ribonuclease HII family protein [Escherichia coli 2362-75] gi|312944791|gb|ADR25618.1| ribonuclease HII [Escherichia coli O83:H1 str. NRG 857C] gi|320196940|gb|EFW71561.1| Ribonuclease HII [Escherichia coli WV_060327] gi|323190417|gb|EFZ75692.1| ribonuclease HII family protein [Escherichia coli RN587/1] gi|324008245|gb|EGB77464.1| ribonuclease HII [Escherichia coli MS 57-2] gi|324014099|gb|EGB83318.1| ribonuclease HII [Escherichia coli MS 60-1] gi|330910033|gb|EGH38543.1| ribonuclease H2 [Escherichia coli AA86] gi|331046083|gb|EGI18202.1| ribonuclease HII [Escherichia coli M605] gi|331052296|gb|EGI24335.1| ribonuclease HII [Escherichia coli TA206] gi|331081789|gb|EGI52950.1| ribonuclease HII [Escherichia coli H299] Length = 198 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 111/182 (60%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P+ LP + AV+KGDS Sbjct: 72 RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSRVP 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|283835245|ref|ZP_06354986.1| ribonuclease HII [Citrobacter youngae ATCC 29220] gi|291068956|gb|EFE07065.1| ribonuclease HII [Citrobacter youngae ATCC 29220] Length = 198 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 85/183 (46%), Positives = 111/183 (60%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L+++I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIIGLNDSKKLSEKRRLALFDEIKEKALSWSVG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P LP + AV+KGDS Sbjct: 72 RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPA-LPVPSMAVVKGDSRVA 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H + + G + HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMAALDTVFPQYGFAQHKGYPTAFHLEKLALHGATEHHRRSFGPV 190 Query: 205 RNL 207 + + Sbjct: 191 KRV 193 >gi|322435742|ref|YP_004217954.1| Ribonuclease H [Acidobacterium sp. MP5ACTX9] gi|321163469|gb|ADW69174.1| Ribonuclease H [Acidobacterium sp. MP5ACTX9] Length = 247 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 85/211 (40%), Positives = 124/211 (58%), Gaps = 13/211 (6%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF---GI 57 + C+ PE+ +R + +AG+DEVGRGAL GPVV AA+IL G+ Sbjct: 17 LVCSDAPEQA-------LRYRGARSIAGVDEVGRGALFGPVVAAAVILPAGLASLAKAGL 69 Query: 58 NDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116 DSK+++ ++RE L ++I AI +S++ + ID+ NI++AT A+ AVE L + P Sbjct: 70 TDSKQLTREERESLDKRIRRMAIAVSVAEIDAETIDRVNIYQATRLAMLQAVEGLAIAPD 129 Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 LID + PC + GD++SLSIAAAS++AKV RD LMR +P YG SH Sbjct: 130 HLLIDAMVVSH--PCPQTKLFYGDALSLSIAAASVVAKVHRDGLMRELDLVHPQYGLASH 187 Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 GY T +H++ + E G +HR +F P+R L Sbjct: 188 KGYATPEHRRALLEHGACALHRHSFAPVRAL 218 >gi|154245214|ref|YP_001416172.1| ribonuclease HII [Xanthobacter autotrophicus Py2] gi|238686707|sp|A7IES2|RNH2_XANP2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|154159299|gb|ABS66515.1| Ribonuclease H [Xanthobacter autotrophicus Py2] Length = 249 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 90/195 (46%), Positives = 125/195 (64%), Gaps = 6/195 (3%) Query: 17 MVREKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 RE+ ++ PVAG DEVGRG LAGPVV AA++LDP +P G++DSKK++ KRE L Sbjct: 40 FTRERALYADGRAPVAGADEVGRGPLAGPVVAAAVVLDPARVPQGLDDSKKLTRAKRESL 99 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 Y +I ++A ++I+ A + ID+ NI +ATL A+ +AV L P L+DG P + C Sbjct: 100 YLEICATAEVAIALAPPERIDRDNIRQATLWALANAVRGLPCRPAFLLVDGNDPPR-VDC 158 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + A++ GD + SIAAASI+AKV RDRLM +P YGF+ H+GY T +H +K Sbjct: 159 EVEAIVGGDGLVASIAAASIVAKVVRDRLMAGVGAAFPAYGFERHMGYGTREHGAALKAH 218 Query: 192 GPSCIHRLTFRPLRN 206 GP HR +F P+R Sbjct: 219 GPCLHHRRSFAPVRE 233 >gi|239993624|ref|ZP_04714148.1| ribonuclease HII [Alteromonas macleodii ATCC 27126] Length = 190 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 87/183 (47%), Positives = 113/183 (61%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK+S KKR L ++I A+ +I Sbjct: 5 IAGVDEVGRGPLVGDVVTAAVILDPENPIEGLTDSKKLSEKKRVALAQEIREKALYWNIG 64 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + IDK NI AT+ A+ AVE L V P +DG +P ++ AV+KGDS+ Sbjct: 65 RASPEEIDKLNILHATMLAMIRAVEGLPVRPDFVRVDGNRVPA-WNFESEAVVKGDSLHA 123 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKV RD M H+ YP Y F H GYPT H + I E G +R +F+P+ Sbjct: 124 EISAASIIAKVERDNDMISLHEAYPQYNFAGHKGYPTKAHFEAIAEYGILDCYRKSFKPV 183 Query: 205 RNL 207 + L Sbjct: 184 KAL 186 >gi|26246129|ref|NP_752168.1| ribonuclease HII [Escherichia coli CFT073] gi|227884904|ref|ZP_04002709.1| ribonuclease HII [Escherichia coli 83972] gi|300993596|ref|ZP_07180452.1| ribonuclease HII [Escherichia coli MS 45-1] gi|301049903|ref|ZP_07196829.1| ribonuclease HII [Escherichia coli MS 185-1] gi|29336711|sp|Q8FL06|RNH2_ECOL6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|26106526|gb|AAN78712.1|AE016755_212 Ribonuclease HII [Escherichia coli CFT073] gi|227838042|gb|EEJ48508.1| ribonuclease HII [Escherichia coli 83972] gi|300298356|gb|EFJ54741.1| ribonuclease HII [Escherichia coli MS 185-1] gi|300406519|gb|EFJ90057.1| ribonuclease HII [Escherichia coli MS 45-1] gi|307552033|gb|ADN44808.1| ribonuclease HII [Escherichia coli ABU 83972] gi|315294587|gb|EFU53934.1| ribonuclease HII [Escherichia coli MS 153-1] gi|323975649|gb|EGB70745.1| ribonuclease HII [Escherichia coli TW10509] Length = 198 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 111/182 (60%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P+ LP + AV+KGDS Sbjct: 72 RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSRVP 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|254480314|ref|ZP_05093562.1| ribonuclease HII [marine gamma proteobacterium HTCC2148] gi|214039876|gb|EEB80535.1| ribonuclease HII [marine gamma proteobacterium HTCC2148] Length = 200 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 87/184 (47%), Positives = 117/184 (63%), Gaps = 4/184 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG LAG VV AA+ILDP+N G+ DSKK+S +REEL I AI SI+ Sbjct: 14 IAGVDEVGRGPLAGDVVTAAVILDPSNPVEGLRDSKKLSESRREELAIIIREKAIAWSIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 AS ID+ NI +A+L A+ AVE L P L+DG +P+ P + V+KGD Sbjct: 74 RASVAEIDELNILQASLLAMKRAVEALTPQPGYVLVDGNRLPQWSYPSEP--VVKGDDRV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV RD + +KYP YGF +H GYPTA H ++ G + +HR ++ P Sbjct: 132 PAIAAASILAKVQRDNELVALEQKYPGYGFAAHKGYPTAAHLHALQSLGVTPVHRRSYAP 191 Query: 204 LRNL 207 +R + Sbjct: 192 VRRI 195 >gi|193215094|ref|YP_001996293.1| ribonuclease HII [Chloroherpeton thalassium ATCC 35110] gi|238692680|sp|B3QRP3|RNH2_CHLT3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|193088571|gb|ACF13846.1| Ribonuclease H [Chloroherpeton thalassium ATCC 35110] Length = 204 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 87/187 (46%), Positives = 110/187 (58%), Gaps = 5/187 (2%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKIT 76 K + G+DEVGRG LAGPVV AA+I D P+ I I+DSK + H+ R L +I Sbjct: 11 KKFQYICGVDEVGRGPLAGPVVAAAVIFDRYFEPSGILEQIDDSKALRHETRVLLSSEIK 70 Query: 77 SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 A+ SI+ S + ID+ NI +AT A+ A+E L IP LIDG LP Sbjct: 71 KQALSFSIAEISPEVIDEVNILQATFLAMNQAIEQLSPIPEFLLIDGNRFKTTLPIPFET 130 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V+KGDS SIAAASIIAKV RD M ++YP+YGF H GYPT H + IK G S Sbjct: 131 VVKGDSKVFSIAAASIIAKVHRDNFMINLAERYPEYGFAQHFGYPTKAHIEAIKMFGRSK 190 Query: 196 IHRLTFR 202 +HR +F+ Sbjct: 191 VHRKSFK 197 >gi|324112406|gb|EGC06383.1| ribonuclease HII [Escherichia fergusonii B253] gi|325496115|gb|EGC93974.1| ribonuclease HII [Escherichia fergusonii ECD227] Length = 198 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 111/182 (60%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P+ LP + AV+KGDS Sbjct: 72 RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSRVP 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|331085160|ref|ZP_08334246.1| hypothetical protein HMPREF0987_00549 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407943|gb|EGG87433.1| hypothetical protein HMPREF0987_00549 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 254 Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 90/194 (46%), Positives = 122/194 (62%), Gaps = 6/194 (3%) Query: 14 LEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 +EAM +N + + GIDEVGRG LAGPVV A+IL ++ +NDSKK++ K+RE Sbjct: 56 IEAMKSYENKYRDAAFICGIDEVGRGPLAGPVVAGAVILPKDSQILYLNDSKKLTEKRRE 115 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 ELYE I A+ + I S ID+ NI +AT +A++ AV L V P L D +IP Sbjct: 116 ELYEVIMREAVAVGIGIVSPARIDEINILQATYEAMWEAVGKLCVEPNVLLNDAVTIPMI 175 Query: 129 LP-CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 P +IKGD+ S+SIAAASI+AKVTRDRLM + P YGF S+ GY +++H Sbjct: 176 PPHIVQVPIIKGDAKSVSIAAASIVAKVTRDRLMTEYEEVLPGYGFASNKGYGSSEHIAA 235 Query: 188 IKEKGPSCIHRLTF 201 +K+ GP+ IHR +F Sbjct: 236 LKKYGPTPIHRRSF 249 >gi|304312462|ref|YP_003812060.1| Ribonuclease HII [gamma proteobacterium HdN1] gi|301798195|emb|CBL46417.1| Ribonuclease HII [gamma proteobacterium HdN1] Length = 201 Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 85/195 (43%), Positives = 121/195 (62%), Gaps = 4/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 L ++ +++ +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S KKRE+L E Sbjct: 4 LSSITDNRDVGLIAGVDEVGRGPLIGAVVAAAVILDPAKPIEGLTDSKKLSEKKREQLAE 63 Query: 74 KITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPC 131 +I + A+ +I A + ID+ NI +A+L A+ AV L + P L+DG P LPC Sbjct: 64 QIRAQALAWAIGRAEAEEIDRINILQASLLAMQRAVLQLAIQPDLVLVDGNRCPRLSLPC 123 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + A++KGD + I+AASI+AKV RD+ M ++YP YG H GYPTA H I+ Sbjct: 124 R--AIVKGDLLVPCISAASILAKVARDQEMLEMDRRYPHYGLAQHKGYPTAAHLAAIEIH 181 Query: 192 GPSCIHRLTFRPLRN 206 G + HR +F P++ Sbjct: 182 GIAPEHRRSFGPIKK 196 >gi|257126162|ref|YP_003164276.1| ribonuclease H [Leptotrichia buccalis C-1013-b] gi|257050101|gb|ACV39285.1| Ribonuclease H [Leptotrichia buccalis C-1013-b] Length = 214 Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 85/188 (45%), Positives = 117/188 (62%), Gaps = 9/188 (4%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREELYEKITS 77 EK V G+DE GRG LAGPVV A+I+ + P INDSKK++ KKRE L+E I Sbjct: 18 EKYNKIVVGVDEAGRGPLAGPVVAGAVIV-IQDFPELQEINDSKKLTEKKRERLFEAIEK 76 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA----LIDGRSIPEDLPCQA 133 + I+ I AS + ID+ NI AT A+ A+ QV +SA L+DG + + + Sbjct: 77 NCIVGIGIASEKEIDEMNILNATFLAMRRAIN--QVAEKSAFDIVLVDGNHLIREYEGEQ 134 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++KGDS SL+IA ASI+AKVTRDR++ K++P+Y F+ H GY T KH++++ EKG Sbjct: 135 ECIVKGDSKSLAIATASIVAKVTRDRMLCEIAKEFPEYQFEKHKGYGTKKHREILLEKGA 194 Query: 194 SCIHRLTF 201 HR TF Sbjct: 195 CRYHRKTF 202 >gi|289662893|ref|ZP_06484474.1| ribonuclease HII [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 242 Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 82/182 (45%), Positives = 118/182 (64%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII-SI 83 VAG+DE GRG LAGPV VAA++ DP+ G++DSK+++ ++RE+LY +I A+ S+ Sbjct: 33 VAGVDEAGRGPLAGPVAVAAVVFDPSKPRINGLDDSKQLTAERREQLYARIVDRALAWSV 92 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD++ Sbjct: 93 VLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALD 152 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I AASI+AKVTRDRLM H ++P Y FD H GY T H ++ GP HR +F P Sbjct: 153 RAIMAASIVAKVTRDRLMHALHAQHPQYRFDQHKGYSTPVHLAALQTHGPCPQHRRSFAP 212 Query: 204 LR 205 +R Sbjct: 213 VR 214 >gi|15837643|ref|NP_298331.1| ribonuclease HII [Xylella fastidiosa 9a5c] gi|11387105|sp|Q9PEI7|RNH2_XYLFA RecName: Full=Ribonuclease HII; Short=RNase HII gi|9105983|gb|AAF83851.1|AE003941_5 ribonuclease HII [Xylella fastidiosa 9a5c] Length = 234 Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 89/191 (46%), Positives = 118/191 (61%), Gaps = 8/191 (4%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSA- 79 N VAG+DE GRG LAGPVVVAA++ DP+ G+NDSK++S RE LY I A Sbjct: 14 NTALVAGVDEAGRGPLAGPVVVAAVVFDPSQPRINGLNDSKQLSPACRERLYAHIVERAL 73 Query: 80 ---IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 ++ I S ID NI++AT+ + AVE + + +SA IDG +P++LPC A A+ Sbjct: 74 AYKVVMIDSTQ---IDTLNIYQATMLGMRLAVEGVAHVAKSARIDGNRLPKNLPCPAEAL 130 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 + GD+ +I AASI+AKVTRDR M H +YP YGFD H GY T H + E GP Sbjct: 131 VGGDARDRTIMAASILAKVTRDRHMVELHLQYPHYGFDKHKGYGTPAHLAALAEHGPCLE 190 Query: 197 HRLTFRPLRNL 207 HR +F P+R + Sbjct: 191 HRRSFAPVRKM 201 >gi|82542782|ref|YP_406729.1| ribonuclease HII [Shigella boydii Sb227] gi|97189266|sp|Q325V7|RNH2_SHIBS RecName: Full=Ribonuclease HII; Short=RNase HII gi|81244193|gb|ABB64901.1| RNAse HII [Shigella boydii Sb227] gi|332098751|gb|EGJ03711.1| ribonuclease HII family protein [Shigella boydii 3594-74] Length = 198 Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 110/182 (60%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P+ LP A V+KGDS Sbjct: 72 RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMVVVKGDSRVP 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|327398743|ref|YP_004339612.1| Ribonuclease H [Hippea maritima DSM 10411] gi|327181372|gb|AEA33553.1| Ribonuclease H [Hippea maritima DSM 10411] Length = 382 Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 85/186 (45%), Positives = 114/186 (61%), Gaps = 2/186 (1%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAII 81 M AG+DE GRG AGPVV A +IL+ + G I+DSKK+S KKREELY I ++I Sbjct: 1 MGKTAGVDEAGRGPWAGPVVAACVILNKDIPHLGDIDDSKKLSPKKREELYRVIKENSIY 60 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I S++ IDK I KA AI A++ + P LIDG+ DLP + +I+GD+ Sbjct: 61 GIGVVSNKEIDKLGIVKAVELAIKRAIDVMDEKPSFLLIDGKD-RFDLPIKYKTIIEGDA 119 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASI+AKV RDR M + YP YGF+ H GY T H +++ GP IHR +F Sbjct: 120 KVKSIAAASILAKVWRDRYMELVADIYPKYGFEKHKGYGTKAHTLALEKYGPCQIHRFSF 179 Query: 202 RPLRNL 207 +P++ + Sbjct: 180 KPIQRV 185 >gi|322389594|ref|ZP_08063143.1| ribonuclease HII [Streptococcus parasanguinis ATCC 903] gi|321143720|gb|EFX39149.1| ribonuclease HII [Streptococcus parasanguinis ATCC 903] Length = 255 Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 88/203 (43%), Positives = 125/203 (61%), Gaps = 9/203 (4%) Query: 12 FELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 LE M+ EK ++ +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI Sbjct: 52 LRLEKMLAYEKELYTQGIHLIAGVDEVGRGPLAGPVVAAAVILPENCKIPGLNDSKKIPK 111 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 K +Y+ + A+ + I +Q ID+ NI++AT A+ A++ L P+ LID Sbjct: 112 SKHHAIYQAVLDQALSVGIGIKDNQVIDQVNIYEATKLAMLEAIQELDPRPQHLLIDAMR 171 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + DLP ++IKGD+ SLSIAAASI+AKVTRD++M +YP Y F +VGY TA H Sbjct: 172 L--DLPIPQTSIIKGDANSLSIAAASIVAKVTRDQMMEEFDCEYPGYDFTQNVGYGTANH 229 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 + + G + IHR +F P++++ Sbjct: 230 LAGLHKLGVTPIHRRSFEPIKSM 252 >gi|301103372|ref|XP_002900772.1| ribonuclease HII [Phytophthora infestans T30-4] gi|262101527|gb|EEY59579.1| ribonuclease HII [Phytophthora infestans T30-4] Length = 249 Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 92/199 (46%), Positives = 117/199 (58%), Gaps = 7/199 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E K V G+DE GRG LAGPVV AA + + GI+DSKKI +RE L+E Sbjct: 35 FETRYEAKGYTTVIGVDEAGRGPLAGPVVAAACHVPLDVTIAGIDDSKKILEPQREALFE 94 Query: 74 KITSSAIIS--ISSASHQYIDKHNIHKATLDAIYHAV----ENLQVIPRS-ALIDGRSIP 126 +TS I+ + S Q ID NI +A+L+++ +V + LQ ++ L+DG +P Sbjct: 95 LLTSHPNITYAVHVNSPQRIDDINILQASLESMTKSVNEVAQQLQQKDKTFVLVDGNKLP 154 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 L A AV+KGDS SIAAASIIAKVTRDRLMR K+P YG H GYPT H Sbjct: 155 PTLELPAEAVVKGDSKVYSIAAASIIAKVTRDRLMREYDVKFPQYGLAQHKGYPTRDHVA 214 Query: 187 VIKEKGPSCIHRLTFRPLR 205 I + GP IHR+TF PL+ Sbjct: 215 AIAKHGPCEIHRMTFAPLK 233 >gi|320120511|gb|EFE28779.2| ribonuclease HII [Filifactor alocis ATCC 35896] Length = 256 Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 78/182 (42%), Positives = 113/182 (62%), Gaps = 1/182 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 K + V G+DE GRG LAGPVV A +I+ +++ G+NDSKKI REELY+K+ +I Sbjct: 72 KGILLVGGVDEAGRGPLAGPVVAACVIMKSDSLILGMNDSKKIKETVREELYDKVIQDSI 131 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 I AS + ID++NI +AT A+ A++ ++ +P L+DG + + VI G Sbjct: 132 SFGIGIASSEEIDRYNILQATFLAMKRAMQEMKQVPDLVLVDGNQEISNCSIRQETVIHG 191 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DSI SIA ASI+AKV RDR+MR + YP++ F S+ GY T+ H ++ G + IHR Sbjct: 192 DSICYSIACASILAKVYRDRIMRDYDRIYPEFDFLSNKGYGTSHHYDALRTYGVTPIHRK 251 Query: 200 TF 201 +F Sbjct: 252 SF 253 >gi|167463784|ref|ZP_02328873.1| Ribonuclease H [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382568|ref|ZP_08056448.1| ribonuclease HII-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153484|gb|EFX45889.1| ribonuclease HII-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 227 Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 89/197 (45%), Positives = 118/197 (59%), Gaps = 10/197 (5%) Query: 17 MVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + +EK +W +AGIDEVGRG L G VV AA+IL ++ INDSKK++ KKRE L Sbjct: 27 LQKEKELWAAGYTAIAGIDEVGRGCLFGDVVAAAVILPADSYIEEINDSKKLTEKKREAL 86 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +E I + A+ + I Q I++ NI +A A+ AVE L + P LID + P Sbjct: 87 FETIMNEAVAVGIGRVDVQTIERINIKQAARLAMKLAVEELALAPDYLLIDAEKVDLSFP 146 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +A VI GD +S SIAAASI+AKVTRDRL YP YG H GY T +H++ I+ Sbjct: 147 QEA--VIHGDELSQSIAAASIVAKVTRDRLCAEWDGLYPGYGIAGHKGYATKEHREQIRL 204 Query: 191 KGPSCIHRLTFRPLRNL 207 GP+ +HR F LRN+ Sbjct: 205 LGPTPLHRSLF--LRNI 219 >gi|289208655|ref|YP_003460721.1| ribonuclease H [Thioalkalivibrio sp. K90mix] gi|288944286|gb|ADC71985.1| Ribonuclease H [Thioalkalivibrio sp. K90mix] Length = 226 Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 89/187 (47%), Positives = 114/187 (60%), Gaps = 3/187 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 R N W VAG+DEVGRG LAGPVV AA+IL + G+ DSKK+S +R+ L +I Sbjct: 30 RVTNAW-VAGVDEVGRGPLAGPVVAAAVILPESFAAPGLTDSKKLSAGRRQALDVEIRER 88 Query: 79 AII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A+ ++ A ID NIH+ATL A+ AV L P L+DGR PE P A A++ Sbjct: 89 AVAWALGRAEAAEIDALNIHRATLLAMQRAVAALSQAPDHLLVDGRFTPEG-PWSAEAIV 147 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD +I+AAS+IAKV RD M H++YPDYGFD H GYPTA H+ + GP H Sbjct: 148 GGDGSVAAISAASVIAKVARDAEMTALHERYPDYGFDRHAGYPTAYHRDALARLGPCVEH 207 Query: 198 RLTFRPL 204 R +F P+ Sbjct: 208 RRSFGPV 214 >gi|167648321|ref|YP_001685984.1| ribonuclease HII [Caulobacter sp. K31] gi|189043575|sp|B0SZF7|RNH2_CAUSK RecName: Full=Ribonuclease HII; Short=RNase HII gi|167350751|gb|ABZ73486.1| Ribonuclease H [Caulobacter sp. K31] Length = 230 Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 91/202 (45%), Positives = 121/202 (59%), Gaps = 4/202 (1%) Query: 7 PERPHFELEAMVREKNMWP--VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 P+ F M+ E P V G+DE GRG AGPV AA+ILDP+ +P G++DSKK+S Sbjct: 11 PQARTFTGPDMMLEAACGPGLVCGVDEAGRGPWAGPVSAAAVILDPSRVPKGLDDSKKLS 70 Query: 65 HKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 K R L +I A+ + AS + I++ NI A A+ A++ L V P AL+DG Sbjct: 71 AKARAVLEIEIKQVAVAWCVGLASIEEIEELNILHAAGLAMCRAIDGLSVKPDIALVDGN 130 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 E LPC VIKGDS+S SIAAASI+AK RDR+M +P YGF SH GY A Sbjct: 131 YRFE-LPCPIKTVIKGDSLSCSIAAASILAKEARDRIMVEMDALHPGYGFASHKGYHAAI 189 Query: 184 HQQVIKEKGPSCIHRLTFRPLR 205 H + ++ GPS IHRL++ P++ Sbjct: 190 HVEGLRRLGPSPIHRLSWAPVK 211 >gi|78224061|ref|YP_385808.1| ribonuclease HII [Geobacter metallireducens GS-15] gi|97182538|sp|Q39RP1|RNH2_GEOMG RecName: Full=Ribonuclease HII; Short=RNase HII gi|78195316|gb|ABB33083.1| RNase HII [Geobacter metallireducens GS-15] Length = 213 Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 96/205 (46%), Positives = 125/205 (60%), Gaps = 4/205 (1%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 + I ER + E +V VAG+DE GRG LAGPVV AA+IL G++DSKK+ Sbjct: 7 DDIGERSLWTFENLVSRNGFHAVAGVDEAGRGPLAGPVVAAAVILPQGAELPGVDDSKKL 66 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S KRE L+ I+ A+ + + A H ID+ NI +ATL A+ AV L V P LIDG Sbjct: 67 SAPKREHLFGLISGCALAVGVGVADHACIDRINILQATLRAMAEAVGQLAVPPDYLLIDG 126 Query: 123 -RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 +IP +LP + + KGDS S+SIA+ASI+AKVTRDR+M +++P YGF H GY Sbjct: 127 ISTIPLNLPQKT--IKKGDSSSISIASASIVAKVTRDRMMMEYDQQFPGYGFAEHKGYGC 184 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRN 206 A H I E GP IHR TFR ++ Sbjct: 185 ASHLAAIAELGPCPIHRKTFRGVKE 209 >gi|254414639|ref|ZP_05028404.1| ribonuclease HII [Microcoleus chthonoplastes PCC 7420] gi|196178487|gb|EDX73486.1| ribonuclease HII [Microcoleus chthonoplastes PCC 7420] Length = 211 Score = 148 bits (373), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 85/183 (46%), Positives = 117/183 (63%), Gaps = 5/183 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI- 80 +AG+DEVGRGAL GPVV AA+IL + +P G+ DSK+++ +R++L ++I A+ Sbjct: 22 IAGVDEVGRGALFGPVVAAAVILPASTLPNLAGSGMKDSKQLTRLRRQKLAQEIQELAVD 81 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 SI A+ ID+ NI +A+L A+ AV L+V P LIDGR LP ++IKGD Sbjct: 82 WSIGYATSTEIDQINILQASLLAMKRAVLKLKVQPDLCLIDGRQALVGLPVPQKSLIKGD 141 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 SL IAAASI+AKV RD L+ KYPDY ++ GY T +H+ ++E GPS HR + Sbjct: 142 QRSLEIAAASIVAKVWRDDLVGRLATKYPDYDLAANKGYGTERHRLALQEFGPSPQHRRS 201 Query: 201 FRP 203 FRP Sbjct: 202 FRP 204 >gi|326316587|ref|YP_004234259.1| ribonuclease H [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373423|gb|ADX45692.1| Ribonuclease H [Acidovorax avenae subsp. avenae ATCC 19860] Length = 240 Score = 148 bits (373), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 81/181 (44%), Positives = 118/181 (65%), Gaps = 4/181 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DE GRG LAGPVV AA+ILD G+ DSK ++ +RE L+++I + A+ S++ Sbjct: 23 VAGVDEAGRGPLAGPVVAAAVILDELQPIDGLADSKTLTAARREALFDEIRAKALCCSVA 82 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 A+ + ID NI +AT+ A+ AV L++ P L+DG +P D+P +A ++KGD++ Sbjct: 83 EATVEEIDTLNILQATMLAMRRAVAGLRLKPVRVLVDGNRLPPLDVPAEA--IVKGDALV 140 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKVTRDR H+ YP YGF SH GY TA+H ++ G HR +F P Sbjct: 141 QAISAASILAKVTRDRWCAQLHQAYPHYGFASHKGYGTAEHMAALQVHGACPEHRRSFAP 200 Query: 204 L 204 + Sbjct: 201 V 201 >gi|325579117|ref|ZP_08149073.1| ribonuclease HII [Haemophilus parainfluenzae ATCC 33392] gi|325159352|gb|EGC71486.1| ribonuclease HII [Haemophilus parainfluenzae ATCC 33392] Length = 200 Score = 148 bits (373), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 83/182 (45%), Positives = 113/182 (62%), Gaps = 1/182 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG L G VV AA+ILDPN G+ DSKK+S KKR L +I A+ ++ Sbjct: 13 VAGVDEVGRGPLVGAVVTAAVILDPNKPIAGLADSKKLSEKKRLALAAEIKEKALAWAMG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI A++ A+ AV+ L++ P L+DG IP +L A AV+KGDS+ Sbjct: 73 RAEPAEIDELNILHASMLAMERAVKALKIQPHFVLVDGNRIPPNLGFPAQAVVKGDSLVA 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M K +P+Y F H GYPT H + + E GP +R +F P+ Sbjct: 133 EISAASILAKVARDQEMEELDKNHPEYAFAQHKGYPTKLHLEKLAELGPLPEYRRSFSPV 192 Query: 205 RN 206 + Sbjct: 193 KK 194 >gi|304414200|ref|ZP_07395568.1| Ribonuclease HII [Candidatus Regiella insecticola LSR1] gi|304283414|gb|EFL91810.1| Ribonuclease HII [Candidatus Regiella insecticola LSR1] Length = 224 Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 87/180 (48%), Positives = 109/180 (60%), Gaps = 2/180 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 +AG+DEVGR L G VV AA+ILDP+ G+ DSKK+S KKR LY+ IT A SI Sbjct: 30 IAGVDEVGRVPLVGAVVTAAVILDPSQPIEGLADSKKLSEKKRRALYQAITQKARSWSIG 89 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI ATL A+ AV L + P LIDG P L AV+KGDS+ Sbjct: 90 RAEPEEIDRLNILNATLLAMQRAVAGLDLTPDYVLIDGNRCPH-LSMPTMAVVKGDSLVA 148 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M +++P YGF H GYPTA H + + G HR +F P+ Sbjct: 149 EISAASILAKVTRDREMVALDQRFPGYGFAQHKGYPTALHLKKLAALGVIPDHRRSFAPV 208 >gi|71899396|ref|ZP_00681555.1| Ribonuclease H [Xylella fastidiosa Ann-1] gi|71730805|gb|EAO32877.1| Ribonuclease H [Xylella fastidiosa Ann-1] Length = 234 Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 89/191 (46%), Positives = 118/191 (61%), Gaps = 8/191 (4%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSA- 79 N VAG+DE GRG LAGPVVVAA++ DP+ G+NDSK++S RE LY I A Sbjct: 14 NTALVAGVDEAGRGPLAGPVVVAAVVFDPSQPHINGLNDSKQLSPACRERLYAHIVERAL 73 Query: 80 ---IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 ++ I S ID NI++AT+ + AVE + + +SA IDG +P++LPC A A+ Sbjct: 74 AYKVVMIDSTQ---IDTLNIYQATMLGMRLAVEGVAHVAKSARIDGNRLPKNLPCPAEAL 130 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 + GD+ +I AASI+AKVTRDR M H +YP YGFD H GY T H + E GP Sbjct: 131 VGGDTRDPTIMAASILAKVTRDRHMVELHLQYPHYGFDKHKGYGTPAHLAALAEHGPCLE 190 Query: 197 HRLTFRPLRNL 207 HR +F P+R + Sbjct: 191 HRQSFAPVRRM 201 >gi|332188926|ref|ZP_08390627.1| ribonuclease HII family protein [Sphingomonas sp. S17] gi|332011037|gb|EGI53141.1| ribonuclease HII family protein [Sphingomonas sp. S17] Length = 198 Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 79/184 (42%), Positives = 114/184 (61%), Gaps = 5/184 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 P+ G+DE GRG LAGPVV AA+IL + P GINDSKK++ K R L +I S AI+ + Sbjct: 9 PLCGVDEAGRGPLAGPVVAAAVILPERDCPSGINDSKKLTEKTRARLCAEIRSCAIVGVG 68 Query: 85 SASHQYIDKHNIHKATLDAIYHAVE----NLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 + ID+ NI+ AT+ A+ AV+ L P L+DG +P+ A A++ GD Sbjct: 69 VVEPEEIDRLNIYWATMKAMTLAVDAVVAGLGRAPAHVLVDGNRLPK-WGYTATAIVGGD 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + SL+I AASI+AK RD +M A + +P YG+ S+ GY +A H ++E GP+ +HR + Sbjct: 128 AKSLAIGAASIVAKHVRDEMMIAAAEDWPAYGWHSNKGYGSATHLAALREHGPTPLHRRS 187 Query: 201 FRPL 204 F P+ Sbjct: 188 FAPV 191 >gi|39934109|ref|NP_946385.1| ribonuclease HII [Rhodopseudomonas palustris CGA009] gi|81563831|sp|Q6NAZ6|RNH2_RHOPA RecName: Full=Ribonuclease HII; Short=RNase HII gi|39647957|emb|CAE26477.1| possible ribonuclease HII [Rhodopseudomonas palustris CGA009] Length = 304 Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 89/195 (45%), Positives = 125/195 (64%), Gaps = 1/195 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + ++ +WP+AG DE GRG LAGPVV AA++LDP +P G++DSK++S +KRE Sbjct: 82 PSFRRERALIKRGIWPIAGCDEAGRGPLAGPVVAAAVVLDPKRVPKGLDDSKRLSAEKRE 141 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+E+I ++A +S+ AS + I++ NI +A+L A+ AV L +PR +DGR Sbjct: 142 ALFEEICATAQVSVVYASPERINRDNILRASLWALTRAVHALPDLPRHVFVDGRDRLATQ 201 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C AVI GD + SIAAASIIAKV+RDRLM ++ P YGF+ H GY +H + Sbjct: 202 -CDCEAVIGGDGLIASIAAASIIAKVSRDRLMCKLAEQCPGYGFEQHKGYGVPEHLDALA 260 Query: 190 EKGPSCIHRLTFRPL 204 GP+ HR F P+ Sbjct: 261 RLGPTVHHRRFFAPV 275 >gi|170021464|ref|YP_001726418.1| ribonuclease HII [Escherichia coli ATCC 8739] gi|194439910|ref|ZP_03071972.1| ribonuclease HII [Escherichia coli 101-1] gi|253774790|ref|YP_003037621.1| ribonuclease HII [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160302|ref|YP_003043410.1| ribonuclease HII [Escherichia coli B str. REL606] gi|300932137|ref|ZP_07147422.1| ribonuclease HII [Escherichia coli MS 187-1] gi|312970284|ref|ZP_07784466.1| ribonuclease HII family protein [Escherichia coli 1827-70] gi|189043595|sp|B1IQF8|RNH2_ECOLC RecName: Full=Ribonuclease HII; Short=RNase HII gi|169756392|gb|ACA79091.1| Ribonuclease H [Escherichia coli ATCC 8739] gi|194421156|gb|EDX37181.1| ribonuclease HII [Escherichia coli 101-1] gi|242376014|emb|CAQ30697.1| RNAse HII, degrades RNA of DNA-RNA hybrids [Escherichia coli BL21(DE3)] gi|253325834|gb|ACT30436.1| Ribonuclease H [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972203|gb|ACT37874.1| ribonuclease HII [Escherichia coli B str. REL606] gi|253976412|gb|ACT42082.1| ribonuclease HII [Escherichia coli BL21(DE3)] gi|300460113|gb|EFK23606.1| ribonuclease HII [Escherichia coli MS 187-1] gi|310337782|gb|EFQ02893.1| ribonuclease HII family protein [Escherichia coli 1827-70] gi|323959944|gb|EGB55591.1| ribonuclease HII [Escherichia coli H489] Length = 198 Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 111/182 (60%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P+ LP + AV+KGDS Sbjct: 72 RAEPYEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSRVP 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|288905300|ref|YP_003430522.1| ribonuclease HII [Streptococcus gallolyticus UCN34] gi|306831379|ref|ZP_07464538.1| ribonuclease HII [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978285|ref|YP_004288001.1| ribonuclease HII [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732026|emb|CBI13591.1| ribonuclease HII [Streptococcus gallolyticus UCN34] gi|304426439|gb|EFM29552.1| ribonuclease HII [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178213|emb|CBZ48257.1| rnhB [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 259 Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 90/206 (43%), Positives = 126/206 (61%), Gaps = 12/206 (5%) Query: 12 FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 LE M+R EK ++ +AGIDEVGRG LAGPVV A +IL N +NDSKKI Sbjct: 52 LRLENMLRYEKELYQQGYQAIAGIDEVGRGPLAGPVVTACVILPKNCKIKHLNDSKKIPK 111 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVI---PRSALID 121 EE+Y++I + A+ I I + ID+ NI++AT + A+ L+ + P LID Sbjct: 112 NHHEEIYQEILARALGIGIGIVDNNVIDQINIYEATKVGMLQAINQLKGVVTKPDYLLID 171 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + +P Q+ IKGD+ SLSIAAASI+AKVTRDR+M YP Y F+ +VGY T Sbjct: 172 AMHLETSIPQQSL--IKGDANSLSIAAASIVAKVTRDRMMADYANDYPGYAFEKNVGYGT 229 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207 +H + +K+ G + IHR TF P++++ Sbjct: 230 KEHLEGLKKYGITPIHRKTFEPIKSM 255 >gi|300920135|ref|ZP_07136586.1| ribonuclease HII [Escherichia coli MS 115-1] gi|300412832|gb|EFJ96142.1| ribonuclease HII [Escherichia coli MS 115-1] Length = 198 Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 111/182 (60%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P+ LP + AV+KGDS Sbjct: 72 RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSRVP 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFVQHKGYPTAFHLEKLAEHGATEHHRRSFGPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|294625960|ref|ZP_06704572.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666389|ref|ZP_06731635.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599755|gb|EFF43880.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603831|gb|EFF47236.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 248 Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 81/182 (44%), Positives = 118/182 (64%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII-SI 83 +AG+DE GRG LAGPV VAA++ DP G++DSK+++ ++RE+LY +I A+ S+ Sbjct: 37 IAGVDEAGRGPLAGPVAVAAVVFDPGKPRINGLDDSKQLTAERREQLYARIVDRALAWSV 96 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD++ Sbjct: 97 VLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALD 156 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I AASI+AKVTRDRLM H ++P+Y FD H GY T H ++ GP HR +F P Sbjct: 157 RAIMAASIVAKVTRDRLMHELHARHPEYRFDQHKGYSTPVHLAALQTHGPCPQHRRSFAP 216 Query: 204 LR 205 +R Sbjct: 217 VR 218 >gi|21242160|ref|NP_641742.1| ribonuclease HII [Xanthomonas axonopodis pv. citri str. 306] gi|39932428|sp|Q8PML9|RNH2_XANAC RecName: Full=Ribonuclease HII; Short=RNase HII gi|21107575|gb|AAM36278.1| ribonuclease HII [Xanthomonas axonopodis pv. citri str. 306] Length = 244 Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 81/182 (44%), Positives = 118/182 (64%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII-SI 83 +AG+DE GRG LAGPV VAA++ DP G++DSK+++ ++RE+LY +I A+ S+ Sbjct: 33 IAGVDEAGRGPLAGPVAVAAVVFDPGKPRINGLDDSKQLTAERREQLYARIVDRALAWSV 92 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD++ Sbjct: 93 VLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALD 152 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I AASI+AKVTRDRLM H ++P+Y FD H GY T H ++ GP HR +F P Sbjct: 153 RAIMAASIVAKVTRDRLMHELHTRHPEYRFDQHKGYSTPVHLAALQTHGPCPQHRRSFAP 212 Query: 204 LR 205 +R Sbjct: 213 VR 214 >gi|306833475|ref|ZP_07466602.1| ribonuclease HII [Streptococcus bovis ATCC 700338] gi|304424245|gb|EFM27384.1| ribonuclease HII [Streptococcus bovis ATCC 700338] Length = 259 Score = 147 bits (372), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 90/206 (43%), Positives = 126/206 (61%), Gaps = 12/206 (5%) Query: 12 FELEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 LE M+R EK ++ +AGIDEVGRG LAGPVV A +IL N +NDSKKI Sbjct: 52 LRLENMLRYEKELYQQGYQAIAGIDEVGRGPLAGPVVTACVILPKNCKIKHLNDSKKIPK 111 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALID 121 K EE+Y++I + A+ I I + ID+ NI++AT + A+ L+ P LID Sbjct: 112 KHHEEIYQEILARALGIGIGIVDNNVIDQINIYEATKVGMLQAINQLKGEVTKPDYLLID 171 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + +P Q+ +KGD+ SLSIAAASI+AKVTRDR+M YP Y F+ +VGY T Sbjct: 172 AMHLETSIPQQSL--LKGDANSLSIAAASIVAKVTRDRMMADYANDYPGYAFEKNVGYGT 229 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207 +H + +K+ G + IHR TF P++++ Sbjct: 230 KEHLEGLKKYGITPIHRKTFEPIKSM 255 >gi|91209253|ref|YP_539239.1| ribonuclease HII [Escherichia coli UTI89] gi|117622468|ref|YP_851381.1| ribonuclease HII [Escherichia coli APEC O1] gi|218557124|ref|YP_002390037.1| ribonuclease HII [Escherichia coli S88] gi|237704342|ref|ZP_04534823.1| ribonuclease HII [Escherichia sp. 3_2_53FAA] gi|122424950|sp|Q1RG06|RNH2_ECOUT RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225184|sp|A1A7M7|RNH2_ECOK1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|226736817|sp|B7MBG4|RNH2_ECO45 RecName: Full=Ribonuclease HII; Short=RNase HII gi|91070827|gb|ABE05708.1| RNAse HII, degrades RNA of DNA-RNA hybrids [Escherichia coli UTI89] gi|115511592|gb|ABI99666.1| ribonuclease HII [Escherichia coli APEC O1] gi|218363893|emb|CAR01558.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli S88] gi|226902254|gb|EEH88513.1| ribonuclease HII [Escherichia sp. 3_2_53FAA] gi|294490169|gb|ADE88925.1| ribonuclease HII [Escherichia coli IHE3034] gi|307629759|gb|ADN74063.1| ribonuclease HII [Escherichia coli UM146] gi|315285250|gb|EFU44695.1| ribonuclease HII [Escherichia coli MS 110-3] gi|323950818|gb|EGB46695.1| ribonuclease HII [Escherichia coli H252] gi|323955144|gb|EGB50919.1| ribonuclease HII [Escherichia coli H263] Length = 198 Score = 147 bits (372), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 111/182 (60%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLVLCEEIKEKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P+ LP + AV+KGDS Sbjct: 72 RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSRVP 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|71275625|ref|ZP_00651910.1| Ribonuclease H [Xylella fastidiosa Dixon] gi|71899522|ref|ZP_00681679.1| Ribonuclease H [Xylella fastidiosa Ann-1] gi|170729566|ref|YP_001774999.1| ribonuclease HII [Xylella fastidiosa M12] gi|238687911|sp|B0U235|RNH2_XYLFM RecName: Full=Ribonuclease HII; Short=RNase HII gi|71163516|gb|EAO13233.1| Ribonuclease H [Xylella fastidiosa Dixon] gi|71730742|gb|EAO32816.1| Ribonuclease H [Xylella fastidiosa Ann-1] gi|167964359|gb|ACA11369.1| Ribonuclease H [Xylella fastidiosa M12] Length = 234 Score = 147 bits (372), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 89/191 (46%), Positives = 118/191 (61%), Gaps = 8/191 (4%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSA- 79 N VAG+DE GRG LAGPVVVAA++ DP+ G+NDSK++S RE LY I A Sbjct: 14 NTALVAGVDEAGRGPLAGPVVVAAVVFDPSQPRINGLNDSKQLSPACRERLYAHIVERAL 73 Query: 80 ---IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 ++ I S ID NI++AT+ + AVE + + +SA IDG +P++LPC A A+ Sbjct: 74 AYKVVMIDSTQ---IDTLNIYQATMLGMRLAVEGVAHVAKSARIDGNRLPKNLPCPAEAL 130 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 + GD+ +I AASI+AKVTRDR M H +YP YGFD H GY T H + E GP Sbjct: 131 VGGDARDPTIMAASILAKVTRDRHMVELHLQYPHYGFDKHKGYGTPAHLAALAEHGPCLE 190 Query: 197 HRLTFRPLRNL 207 HR +F P+R + Sbjct: 191 HRQSFAPVRRM 201 >gi|316932574|ref|YP_004107556.1| ribonuclease H [Rhodopseudomonas palustris DX-1] gi|315600288|gb|ADU42823.1| Ribonuclease H [Rhodopseudomonas palustris DX-1] Length = 299 Score = 147 bits (372), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 89/195 (45%), Positives = 124/195 (63%), Gaps = 1/195 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + ++ +WPVAG DE GRG LAGPVV AA++LDP IP G++DSK++S +KRE Sbjct: 77 PSFRRERALIKRGIWPVAGCDEAGRGPLAGPVVAAAVVLDPKRIPKGLDDSKRLSAEKRE 136 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+E+I ++A +++ AS + I++ NI +A+L A+ AV L +P+ +DGR Sbjct: 137 ALFEEICATAQVAVVYASPERINRDNILRASLWALTRAVHALPELPKQVFVDGRDRLATR 196 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C AVI GD + SIAAASIIAKV+RDRLM ++ P YGF+ H GY H + Sbjct: 197 -CDCEAVIGGDGLIASIAAASIIAKVSRDRLMCRLAEQCPGYGFEQHKGYGVPDHLDALA 255 Query: 190 EKGPSCIHRLTFRPL 204 GP+ HR F P+ Sbjct: 256 RLGPTVHHRRAFAPV 270 >gi|237747799|ref|ZP_04578279.1| ribonuclease HII [Oxalobacter formigenes OXCC13] gi|229379161|gb|EEO29252.1| ribonuclease HII [Oxalobacter formigenes OXCC13] Length = 219 Score = 147 bits (372), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 82/181 (45%), Positives = 117/181 (64%), Gaps = 2/181 (1%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSA 86 G DE GRG +AGPV AA+ILDP++ G+ DSKK+S +R+EL +I A +I+ Sbjct: 32 GADEAGRGPIAGPVFAAAVILDPDHPIAGLKDSKKLSEHRRDELALEIKQYARAWAIAEC 91 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSI 146 S + ID+ NI A++ A+ A+E+L + P ALIDG P+ L A A++KGD +I Sbjct: 92 SIEEIDELNILHASMLAMKRAIESLAIRPELALIDGNRCPK-LAIAAKAIVKGDDKVPAI 150 Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 +AASI+AK RD +M H++YP+YGFD H GYPTA H + + G S +HR T+ P+R Sbjct: 151 SAASILAKTARDAVMLDLHRQYPEYGFDRHKGYPTAYHLEQLSIHGVSPVHRKTYAPVRK 210 Query: 207 L 207 + Sbjct: 211 I 211 >gi|332184412|gb|AEE26666.1| Ribonuclease HII [Francisella cf. novicida 3523] Length = 185 Score = 147 bits (372), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 86/186 (46%), Positives = 121/186 (65%), Gaps = 8/186 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA----II 81 + GIDE GRG L+GPVV A ++LDPN I G+ DSKK++ KKR+ LY++I S A I+ Sbjct: 3 ILGIDEAGRGPLSGPVVAAGVVLDPNIIIDGLADSKKLTEKKRQSLYQQIISHAKAYTIV 62 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 ISS HQ ID+ NI +ATL A++ +NL+ L+DG +P + + A++KGDS Sbjct: 63 EISS--HQ-IDELNILQATLKAMHQVADNLKGQFDKILVDGNKLP-NWNYNSEAIVKGDS 118 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 L I+AASI+AKV RD + + YP YGF H GYPT +H + IK+ G IHR ++ Sbjct: 119 KILEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSY 178 Query: 202 RPLRNL 207 +P++ L Sbjct: 179 KPVQIL 184 >gi|238784894|ref|ZP_04628894.1| Ribonuclease HII [Yersinia bercovieri ATCC 43970] gi|238714211|gb|EEQ06223.1| Ribonuclease HII [Yersinia bercovieri ATCC 43970] Length = 183 Score = 147 bits (371), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 83/180 (46%), Positives = 112/180 (62%), Gaps = 2/180 (1%) Query: 29 IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSAS 87 +DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++IT A+ S+ A Sbjct: 1 MDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEITDKALSWSLGRAE 60 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 + ID+ NI AT+ A+ AV L + P LIDG P+ L + AV+KGDS I+ Sbjct: 61 PEEIDRLNILHATMLAMQRAVAGLHITPDYVLIDGNRCPK-LAMPSLAVVKGDSRVAEIS 119 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 AASI+AKVTRDR M + +P+YGF H GYPTA H + + G + HR +F P++ + Sbjct: 120 AASILAKVTRDREMTELDRHFPEYGFAQHKGYPTAVHLEKLSAFGATEHHRRSFGPVKRV 179 >gi|171463285|ref|YP_001797398.1| Ribonuclease H [Polynucleobacter necessarius subsp. necessarius STIR1] gi|238689054|sp|B1XTV7|RNH2_POLNS RecName: Full=Ribonuclease HII; Short=RNase HII gi|171192823|gb|ACB43784.1| Ribonuclease H [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 197 Score = 147 bits (371), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 89/189 (47%), Positives = 118/189 (62%), Gaps = 7/189 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-II 81 +W V G+DE GRG L G VV A++LDPNN G+ DSKK++ +RE LYE+I A Sbjct: 4 IW-VCGVDEAGRGPLVGAVVAGAVVLDPNNPIEGLKDSKKLTAARREYLYEQIMEKAKAW 62 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQV----IPRSALIDGRSIPEDLPCQAFAVI 137 + AS ID+ NI +AT+ A+ A+E+L P ALIDG PE LP A A+I Sbjct: 63 GVGEASPTEIDEINILQATMLAMRRAIEDLATRLGAWPDKALIDGNRCPE-LPIAAEAII 121 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD+ +I+AASI+AKVTRDR M H+++P+YGF H+GYPT H +K+ G H Sbjct: 122 KGDTKEPAISAASIVAKVTRDRQMMSLHERHPEYGFAQHMGYPTEAHFAALKQYGACDQH 181 Query: 198 RLTFRPLRN 206 R F P+R Sbjct: 182 RRCFSPVRK 190 >gi|73666806|ref|YP_302822.1| ribonuclease H [Ehrlichia canis str. Jake] gi|97182460|sp|Q3YST1|RNH2_EHRCJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|72393947|gb|AAZ68224.1| Ribonuclease H [Ehrlichia canis str. Jake] Length = 209 Score = 147 bits (371), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 87/194 (44%), Positives = 118/194 (60%), Gaps = 4/194 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAA--IILDPNNIPFGINDSKKISHKKREE 70 E+ + +KN + G+DEVG G+LAGPVV AA + N I + I DSKK++ KKR E Sbjct: 9 EISKSINKKNC-IIVGVDEVGYGSLAGPVVSAASFFLRHDNEIIYNIKDSKKLTPKKRIE 67 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +Y ITS SI A ID+HNI AT A+ A+ L ++DG +P DLP Sbjct: 68 VYNTITSIVKWSIGFADVYEIDQHNILNATHLAMQRALNGLNCDIDYVIVDGNKVP-DLP 126 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A++ GD+IS+SIAAASIIAKVTRD+LM H +YP+Y ++ + GY T H + + + Sbjct: 127 WNRKAIVDGDNISVSIAAASIIAKVTRDKLMETLHTQYPEYQWNKNKGYGTKHHLESLYK 186 Query: 191 KGPSCIHRLTFRPL 204 G + HR TF PL Sbjct: 187 YGKTIHHRNTFAPL 200 >gi|28198242|ref|NP_778556.1| ribonuclease HII [Xylella fastidiosa Temecula1] gi|182680879|ref|YP_001829039.1| ribonuclease HII [Xylella fastidiosa M23] gi|32129977|sp|Q87EI6|RNH2_XYLFT RecName: Full=Ribonuclease HII; Short=RNase HII gi|238691079|sp|B2I7N7|RNH2_XYLF2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|28056312|gb|AAO28205.1| ribonuclease HII [Xylella fastidiosa Temecula1] gi|182630989|gb|ACB91765.1| Ribonuclease H [Xylella fastidiosa M23] gi|307579347|gb|ADN63316.1| ribonuclease HII [Xylella fastidiosa subsp. fastidiosa GB514] Length = 234 Score = 147 bits (371), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 89/191 (46%), Positives = 118/191 (61%), Gaps = 8/191 (4%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSA- 79 N VAG+DE GRG LAGPVVVAA++ DP+ G+NDSK++S RE LY I A Sbjct: 14 NTALVAGVDEAGRGPLAGPVVVAAVVFDPSQPHINGLNDSKQLSPACRERLYAHIVERAL 73 Query: 80 ---IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 ++ I S ID NI++AT+ + AVE + + +SA IDG +P++LPC A A+ Sbjct: 74 AYKVVMIDSTQ---IDTLNIYQATMLGMRLAVEGVAHVAKSARIDGNRLPKNLPCPAEAL 130 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 + GD+ +I AASI+AKVTRDR M H +YP YGFD H GY T H + E GP Sbjct: 131 VGGDARDPTIMAASILAKVTRDRHMVELHLQYPHYGFDKHKGYGTPAHLAALAEHGPCLE 190 Query: 197 HRLTFRPLRNL 207 HR +F P+R + Sbjct: 191 HRQSFAPVRRM 201 >gi|110801760|ref|YP_698993.1| ribonuclease HII [Clostridium perfringens SM101] gi|123047313|sp|Q0SSB4|RNH2_CLOPS RecName: Full=Ribonuclease HII; Short=RNase HII gi|110682261|gb|ABG85631.1| ribonuclease HII [Clostridium perfringens SM101] Length = 272 Score = 147 bits (371), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 97/221 (43%), Positives = 125/221 (56%), Gaps = 21/221 (9%) Query: 5 SIPERPHFELEAMVRE----KNMW----------PVAGIDEVGRGALAGPVVVAAIILDP 50 S+ R L +++E KNM+ VAG+DEVGRG LAGP+V AA+ILD Sbjct: 54 SLGNRLEKNLNNLIKEEERVKNMYFFDKSFGDYKYVAGVDEVGRGPLAGPIVSAAVILDS 113 Query: 51 NN---IPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYH 106 +N I INDSKK+S KREEL E I A+ SIS + ID+ I Sbjct: 114 SNLDDIILYINDSKKLSEHKREELSEIIKEKALSYSISMCDSKEIDEKGIGYCNNHVFIK 173 Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 A E L + P L DG I ++ + VIKGD+ S IA ASIIAKV RD +M+ HK Sbjct: 174 ACEGLNIKPDLVLSDGYLI-KNFNGENKHVIKGDTKSACIACASIIAKVYRDNIMKEYHK 232 Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 KYP Y F+ +VGY T H +KE GP+ IHR++F L+N+ Sbjct: 233 KYPQYDFEKNVGYGTKTHVDALKEVGPTEIHRMSF--LKNI 271 >gi|315658466|ref|ZP_07911338.1| ribonuclease HII [Staphylococcus lugdunensis M23590] gi|315496795|gb|EFU85118.1| ribonuclease HII [Staphylococcus lugdunensis M23590] Length = 255 Score = 147 bits (371), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 86/185 (46%), Positives = 117/185 (63%), Gaps = 7/185 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA---IIS 82 + GIDEVGRG LAGPVV A+IL+ N+ G+NDSKK+S R +L + + + Sbjct: 74 ICGIDEVGRGPLAGPVVACAVILNANHHYLGLNDSKKVSAVNRAQLNQDLMDNVRGYAYG 133 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+SA+ ID+ NI++AT A+ A+ LQV P LID SI D A+IKGD+ Sbjct: 134 IASAAE--IDQLNIYRATQVAMQRAINQLQVRPTHLLIDAMSI--DSTISQTAIIKGDAK 189 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 S+SIAAASI+AK RD LMR + YP YGFD +VGY T H +++ G + IHR TF Sbjct: 190 SVSIAAASIMAKEYRDHLMRDYAQVYPHYGFDKNVGYGTKAHLAGLEQYGVTPIHRRTFE 249 Query: 203 PLRNL 207 P++++ Sbjct: 250 PVKSM 254 >gi|289675278|ref|ZP_06496168.1| ribonuclease HII [Pseudomonas syringae pv. syringae FF5] Length = 198 Score = 147 bits (371), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 82/175 (46%), Positives = 109/175 (62%), Gaps = 2/175 (1%) Query: 32 VGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-ISSASHQY 90 +GRG L G VV AA+ILDP G+NDSKK++ +RE+L+ +I A+ I+ A + Sbjct: 1 MGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKLFVEIQEKALCWFIARAEVEE 60 Query: 91 IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAAS 150 ID+ NI AT+ A+ AVE L + PR ALIDG P+ L + V+KGDS +IAAAS Sbjct: 61 IDQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQ-LSVPSAPVVKGDSKVPAIAAAS 119 Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P+R Sbjct: 120 ILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPVR 174 >gi|300776110|ref|ZP_07085969.1| ribonuclease H [Chryseobacterium gleum ATCC 35910] gi|300505243|gb|EFK36382.1| ribonuclease H [Chryseobacterium gleum ATCC 35910] Length = 194 Score = 147 bits (371), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 83/192 (43%), Positives = 122/192 (63%), Gaps = 5/192 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 +E + N++ AG DEVGRG L+GPVV AA+ILD +NDSKK++ K R EL Sbjct: 1 MELIKNWSNLYIEAGCDEVGRGCLSGPVVAAAVILDEGFEQNLVNDSKKLTFKTRMELDS 60 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-PED-LP 130 I + +I+ +ID+HNI A++ A++ A++ L + P L+DG P + +P Sbjct: 61 YIKDNVKNYAIAELPASFIDEHNILNASIHAMHRALDKLTITPELILVDGNKFHPYNYIP 120 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 Q +IKGDS LSIAAASI+AK RD+LM H+++P+YG+D++ GY T KHQ+ + + Sbjct: 121 HQC--IIKGDSKVLSIAAASILAKNYRDKLMMQLHEEHPEYGWDTNFGYATKKHQEALIK 178 Query: 191 KGPSCIHRLTFR 202 GP+ HR +FR Sbjct: 179 HGPTIYHRQSFR 190 >gi|121608424|ref|YP_996231.1| ribonuclease HII [Verminephrobacter eiseniae EF01-2] gi|189043674|sp|A1WHV6|RNH2_VEREI RecName: Full=Ribonuclease HII; Short=RNase HII gi|121553064|gb|ABM57213.1| Ribonuclease H [Verminephrobacter eiseniae EF01-2] Length = 209 Score = 147 bits (371), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 80/181 (44%), Positives = 115/181 (63%), Gaps = 4/181 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DE GRG LAGPV+ AA++LD G+ DSKK++ +R L+++I + A+ SI+ Sbjct: 22 VAGVDEAGRGPLAGPVMAAAVMLDERQPIMGLADSKKLTPARRASLFDEIRAKALCYSIA 81 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 AS Q ID NI +ATL A+ AV+ L++ P L+DG +P D+P QA ++KGD++ Sbjct: 82 QASVQEIDALNILQATLLAMRRAVQGLRLRPALVLVDGNRLPRLDIPAQA--IVKGDALQ 139 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKV RD H ++P YGF H GY TA H ++ G HR +F P Sbjct: 140 PAISAASILAKVQRDHWCVQVHAEFPQYGFAGHKGYGTAMHLAALRAHGACIHHRRSFAP 199 Query: 204 L 204 + Sbjct: 200 V 200 >gi|58584899|ref|YP_198472.1| ribonuclease HII [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|73917838|sp|Q5GRZ4|RNH2_WOLTR RecName: Full=Ribonuclease HII; Short=RNase HII gi|58419215|gb|AAW71230.1| Ribonuclease HII [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 203 Score = 147 bits (371), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 87/198 (43%), Positives = 120/198 (60%), Gaps = 6/198 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKR 68 P F LE K +AG+DEVGRG LAGPV+ AA++ NI GINDSKK++ K R Sbjct: 4 PDFTLE----NKLSGVIAGVDEVGRGPLAGPVMSAAVVFTNRNIIIEGINDSKKLTAKNR 59 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + LYEKI S A I AS I+ +NI +AT ++ A+ NL + L+DG P Sbjct: 60 QVLYEKIISVAKFGIGMASVAEINSYNILQATKLSMERALVNLGIELDYVLVDGNQ-PPK 118 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + Q +++KGDS+S+S+AAASI+AKV RD+LM+ H +YP+Y + + GY T H I Sbjct: 119 VKWQVKSIVKGDSLSVSVAAASIVAKVARDQLMQELHNQYPEYNWYKNKGYGTKGHIDAI 178 Query: 189 KEKGPSCIHRLTFRPLRN 206 G + HR +F P+ N Sbjct: 179 NLYGVTEHHRKSFAPILN 196 >gi|306821648|ref|ZP_07455246.1| ribonuclease HII [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550393|gb|EFM38386.1| ribonuclease HII [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 263 Score = 147 bits (371), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 90/198 (45%), Positives = 120/198 (60%), Gaps = 4/198 (2%) Query: 12 FELEAMVRE-KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 +E E +RE +N + IDEVGRG LAGP+VV ++LD N ++DSKK+S KKR+E Sbjct: 67 YEYEKNIRESENKQNILCIDEVGRGPLAGPLVVCGVMLDENPEILYVDDSKKLSEKKRKE 126 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 ++E+I I I + ID+ NI AT A+ H +N V L+DG I +D+ Sbjct: 127 IFEQIMQKNIRYEIMTVEVDKIDELNIFNATYRAMSHIAKNFPVKIDHILVDGNQILKDV 186 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 AVIKGDS L IA ASIIAKVTRD +M K YP Y F S+ GY T+KH + IK Sbjct: 187 NIDQTAVIKGDSKVLGIAIASIIAKVTRDAMMIDYDKIYPMYDFASNKGYGTSKHIEGIK 246 Query: 190 EKGPSCIHRLTFRPLRNL 207 + G IHR++F L+N+ Sbjct: 247 KYGTCPIHRMSF--LKNI 262 >gi|261408005|ref|YP_003244246.1| Ribonuclease H [Paenibacillus sp. Y412MC10] gi|329924283|ref|ZP_08279438.1| ribonuclease HII [Paenibacillus sp. HGF5] gi|261284468|gb|ACX66439.1| Ribonuclease H [Paenibacillus sp. Y412MC10] gi|328940765|gb|EGG37080.1| ribonuclease HII [Paenibacillus sp. HGF5] Length = 205 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 86/199 (43%), Positives = 123/199 (61%), Gaps = 10/199 (5%) Query: 17 MVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 ++ E+ W +AGIDEVGRG L G VV AA+I+ + GINDSKK+S KKRE LY Sbjct: 5 LMYEREYWSRYIHIAGIDEVGRGCLFGDVVAAAVIMPEGLVIEGINDSKKLSAKKRETLY 64 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I A+ + + + ID+ NI +A A+ A+E L V P+ L+D + D+P Sbjct: 65 DLIMEQALAVGVGLVDAETIDRINIKQAARLAMKKAIEQLAVPPQFLLVDAEKVDCDIPQ 124 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK-KYPDYGFDSHVGYPTAKHQQVIKE 190 + A+IKGD+ S SI AASIIAKVTRDRL + +YP+YG H GY T H++ ++ Sbjct: 125 R--AIIKGDANSQSIGAASIIAKVTRDRLCEGEWEARYPEYGIAVHKGYATKFHREQLQL 182 Query: 191 KGPSCIHRLTFRPLRNLSV 209 GP+ +HR +F L+N+ + Sbjct: 183 HGPTAMHRRSF--LKNMEI 199 >gi|192289636|ref|YP_001990241.1| ribonuclease HII [Rhodopseudomonas palustris TIE-1] gi|238692592|sp|B3QHK8|RNH2_RHOPT RecName: Full=Ribonuclease HII; Short=RNase HII gi|192283385|gb|ACE99765.1| Ribonuclease H [Rhodopseudomonas palustris TIE-1] Length = 281 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 89/195 (45%), Positives = 125/195 (64%), Gaps = 1/195 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + ++ +WP+AG DE GRG LAGPVV AA++LDP +P G++DSK++S +KRE Sbjct: 59 PSFRRERALIKRGIWPIAGCDEAGRGPLAGPVVAAAVVLDPKRVPKGLDDSKRLSAEKRE 118 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+E+I ++A +S+ AS + I++ NI +A+L A+ AV L +PR +DGR Sbjct: 119 ALFEEICATAQVSVVYASPERINRDNILRASLWALTRAVHALPDLPRHVFVDGRDR-LAT 177 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C AVI GD + SIAAASIIAKV+RDRLM ++ P YGF+ H GY +H + Sbjct: 178 KCDCEAVIGGDGLIASIAAASIIAKVSRDRLMCKLAEQCPGYGFEQHKGYGVPEHLDALA 237 Query: 190 EKGPSCIHRLTFRPL 204 GP+ HR F P+ Sbjct: 238 RLGPTVHHRRFFAPV 252 >gi|317406254|gb|EFV86498.1| ribonuclease HII [Achromobacter xylosoxidans C54] Length = 202 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 85/186 (45%), Positives = 114/186 (61%), Gaps = 4/186 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 AG+DE GRG LAG V AA+ILDP G+ DSK + RE L +I + A+ ++ Sbjct: 17 TAGVDEAGRGPLAGAVYAAAVILDPARPIDGLADSKVLKAATREALALEIQAHALAWCVA 76 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS ID NI +ATL A+ AVE L + P+ AL+DG P+ L C VIKGD++ Sbjct: 77 SASVAEIDSLNILRATLLAMRRAVEGLSLAPQLALVDGNQAPK-LGCTVQTVIKGDALVP 135 Query: 145 SIAAASIIAKVTRDR-LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AK RD L+R+ H YP Y FD H GY TA H Q+++E GP HR +F P Sbjct: 136 AISAASILAKTARDADLLRL-HSLYPQYAFDQHKGYGTALHLQMLREHGPCAEHRRSFAP 194 Query: 204 LRNLSV 209 ++ + Sbjct: 195 IKAFGL 200 >gi|197303275|ref|ZP_03168316.1| hypothetical protein RUMLAC_01998 [Ruminococcus lactaris ATCC 29176] gi|197297701|gb|EDY32260.1| hypothetical protein RUMLAC_01998 [Ruminococcus lactaris ATCC 29176] Length = 252 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 87/177 (49%), Positives = 112/177 (63%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84 + GIDE GRG LAGPVV A+IL + +NDSKK+S +REELY++I A+ + I Sbjct: 72 ICGIDEAGRGPLAGPVVAGAVILPADCEILYLNDSKKLSAARREELYDEIMEKAVATGIG 131 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID+ NI +AT +A+ AV L P L D +IPE + +IKGD+ S+ Sbjct: 132 MASPARIDEINILQATYEAMREAVSKLSREPDLLLNDAVTIPE-MTIMQVPIIKGDAKSV 190 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASI+AKVTRDRLM K P+YGF H GY + +H I++ GPS IHR TF Sbjct: 191 SIAAASILAKVTRDRLMIEYDKILPEYGFAGHKGYGSKEHIAAIQKYGPSPIHRRTF 247 >gi|114776989|ref|ZP_01452009.1| ribonuclease HII [Mariprofundus ferrooxydans PV-1] gi|114552510|gb|EAU54970.1| ribonuclease HII [Mariprofundus ferrooxydans PV-1] Length = 185 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 85/184 (46%), Positives = 114/184 (61%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG LAGPVV AA+IL P++ G DSKK++ KKR +LY I A+ ++ Sbjct: 2 LAGVDEVGRGPLAGPVVTAAVILSPDDPYLGQYRDSKKVAEKKRLKLYHHIRKHAVAYTV 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A+ + ID NI AT+ ++ +VE L V P ++DG IP DL A A+I GD + Sbjct: 62 TMATVEEIDHLNILHATMLSMRRSVEGLAVRPVRVVVDGNRIP-DLTMPAEAIIGGDDLV 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 IAAASIIAKV RDRLM + ++P Y F H GY T H ++E GP HR +F P Sbjct: 121 QEIAAASIIAKVVRDRLMAMLDVRHPGYQFTKHKGYGTKVHMDALREHGPCPAHRRSFAP 180 Query: 204 LRNL 207 + L Sbjct: 181 VTKL 184 >gi|56964049|ref|YP_175780.1| ribonuclease HII [Bacillus clausii KSM-K16] gi|73917599|sp|Q5WFP1|RNH2_BACSK RecName: Full=Ribonuclease HII; Short=RNase HII gi|56910292|dbj|BAD64819.1| ribonuclease HII [Bacillus clausii KSM-K16] Length = 259 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 83/194 (42%), Positives = 117/194 (60%), Gaps = 3/194 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E ++++ V G+DEVGRG LAGPV A IL + G+ DSKK+S KREE Sbjct: 57 WRYEQELKQRGYVAVCGVDEVGRGPLAGPVTACACILPDDFQLLGLTDSKKLSKAKREEY 116 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I+ A+ SI+S S ID+ NI +AT A+ A+ L L+D ++ D+P Sbjct: 117 AKMISEQAVAYSIASVSAAEIDEINILQATKKAMTKAINGLSQKTDHLLLD--AVRLDVP 174 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAA+S++AKV RDR M + YP YGFD+H GY TA H Q ++ Sbjct: 175 IAQTSLIKGDAKSLSIAASSVLAKVWRDRYMEELAQTYPGYGFDTHAGYGTASHLQALRT 234 Query: 191 KGPSCIHRLTFRPL 204 G + HR +FRP+ Sbjct: 235 YGMTPEHRKSFRPV 248 >gi|154250014|ref|YP_001410839.1| ribonuclease HII [Fervidobacterium nodosum Rt17-B1] gi|154153950|gb|ABS61182.1| Ribonuclease H [Fervidobacterium nodosum Rt17-B1] Length = 245 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 80/189 (42%), Positives = 115/189 (60%), Gaps = 7/189 (3%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + + G+DE GRG + GPVV AA+ D GI DSKK+S KREELYEKI+ SA I Sbjct: 9 YSIIGVDEAGRGPIFGPVVAAAVFFDEGIYIEGITDSKKLSESKREELYEKISFSAKFGI 68 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVI-----PRSALIDGRSIPEDLPCQAFAVIK 138 A+ ID +NI AT A+ A+E L ++ +DG+ + + P + ++K Sbjct: 69 GIATPDEIDVYNILHATELAMNRALEILSYYIKIDEGKNIYVDGKDLRLNFPSK--CIVK 126 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD I+AASI+AKVTRDR+M+ K++P+Y H GY T++H +++K+ GP+ HR Sbjct: 127 GDEKVYQISAASILAKVTRDRIMKKFDKEFPEYNLSKHKGYATSEHIELLKKYGPTPYHR 186 Query: 199 LTFRPLRNL 207 LTF P+ L Sbjct: 187 LTFDPVFQL 195 >gi|225025287|ref|ZP_03714479.1| hypothetical protein EIKCOROL_02184 [Eikenella corrodens ATCC 23834] gi|224941905|gb|EEG23114.1| hypothetical protein EIKCOROL_02184 [Eikenella corrodens ATCC 23834] Length = 194 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 80/183 (43%), Positives = 113/183 (61%), Gaps = 3/183 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISIS 84 AG+DE GRG L G V AA++L PN G+ DSKK+S ++R+EL I A+ ++ Sbjct: 5 AGVDEAGRGPLVGSVFAAAVVL-PNEYDLPGLTDSKKLSERRRDELAVLIKQQALAWCVA 63 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 +AS + ID+ NI AT+ A+ AV L+ +P IDG +P DL C+A AVIKGDS + Sbjct: 64 AASVEEIDRLNILHATMLAMRRAVHGLERLPEKVWIDGNRVPPDLGCEAEAVIKGDSKII 123 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AAS++AK RD M ++YP YGF+ H GY TA+H ++ G HR +F P+ Sbjct: 124 QISAASVLAKTARDAEMYALAERYPQYGFERHKGYGTAEHLAALQRHGALPEHRRSFAPV 183 Query: 205 RNL 207 R + Sbjct: 184 REI 186 >gi|325661112|ref|ZP_08149739.1| hypothetical protein HMPREF0490_00472 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472619|gb|EGC75830.1| hypothetical protein HMPREF0490_00472 [Lachnospiraceae bacterium 4_1_37FAA] Length = 254 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 91/194 (46%), Positives = 121/194 (62%), Gaps = 6/194 (3%) Query: 14 LEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 +EAM +N + + GIDEVGRG LAGPVV A+IL ++ +NDSKK++ K+RE Sbjct: 56 IEAMKSYENKYRDAAFICGIDEVGRGPLAGPVVAGAVILPKDSQILYLNDSKKLTEKRRE 115 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 ELYE I AI + I S ID+ NI +AT +A+ AV L V P L D +IP Sbjct: 116 ELYEVIMREAIAVGIGIVSPARIDEINILQATYEAMREAVGKLCVEPNVLLNDAVTIPMI 175 Query: 129 LP-CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 P +IKGD+ S+SIAAASI+AKVTRDRLM + P YGF S+ GY +++H Sbjct: 176 PPHIVQVPIIKGDAKSVSIAAASIVAKVTRDRLMTEYEEVLPGYGFASNKGYGSSEHIAA 235 Query: 188 IKEKGPSCIHRLTF 201 +K+ GP+ IHR +F Sbjct: 236 LKKYGPTPIHRRSF 249 >gi|241764771|ref|ZP_04762780.1| Ribonuclease H [Acidovorax delafieldii 2AN] gi|241365761|gb|EER60433.1| Ribonuclease H [Acidovorax delafieldii 2AN] Length = 205 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/181 (46%), Positives = 118/181 (65%), Gaps = 4/181 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DE GRG LAGPVV AA+ILD N G+ DSKK++ +RE L+++I + A+ SI+ Sbjct: 22 VAGVDEAGRGPLAGPVVAAAVILDDLNPIAGLADSKKLTAARREALFDEIRAKALCCSIA 81 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 AS + ID+ NI +ATL A+ AV L++ P A++DG +P D+P A A++ GD++ Sbjct: 82 EASVEEIDRLNILQATLLAMRRAVMGLRLKPVRAVVDGNRLPLLDMP--ADAIVNGDALV 139 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKV RDR + +P YGF H GY TA H ++E G HR TF P Sbjct: 140 PAISAASILAKVHRDRWCVQIDEHFPQYGFAGHKGYGTAVHMAALREHGACVHHRRTFAP 199 Query: 204 L 204 + Sbjct: 200 V 200 >gi|228476746|ref|ZP_04061412.1| ribonuclease HII [Streptococcus salivarius SK126] gi|228251617|gb|EEK10718.1| ribonuclease HII [Streptococcus salivarius SK126] Length = 255 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 126/201 (62%), Gaps = 9/201 (4%) Query: 14 LEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LE M+ EK+++ +AG+DEVGRG LAGPVV AA+IL G+NDSKKI K Sbjct: 54 LEMMLSYEKSLYTQGVELIAGVDEVGRGPLAGPVVAAAVILPKFCKIKGLNDSKKIPKSK 113 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 E +Y+++ A+ + I + ID NI++AT A+ A+E L+ P LID ++ Sbjct: 114 HEAIYKQVMKEAVAVGIGIKDNHVIDDVNIYEATKLAMVEAIEKLEPQPEHLLIDAMTL- 172 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 DLP ++IKGD+ SLSIAAASI+AKVTRD++M +++P Y F + GY T +H Sbjct: 173 -DLPIGQTSIIKGDANSLSIAAASIVAKVTRDKMMADYEQEFPGYAFAKNAGYGTKEHLS 231 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G + IHR +F P++++ Sbjct: 232 GIDKFGVTPIHRRSFEPIKSI 252 >gi|325929586|ref|ZP_08190700.1| RNase HII [Xanthomonas perforans 91-118] gi|325540096|gb|EGD11724.1| RNase HII [Xanthomonas perforans 91-118] Length = 245 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 81/182 (44%), Positives = 118/182 (64%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII-SI 83 +AG+DE GRG LAGPV VAA++ DP G++DSK+++ ++RE+LY +I A+ S+ Sbjct: 37 IAGVDEAGRGPLAGPVAVAAVVFDPGKPRINGLDDSKQLTAERREQLYARIVDRALAWSV 96 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD++ Sbjct: 97 VLIHSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALD 156 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I AASI+AKVTRDRLM H ++P+Y FD H GY T H ++ GP HR +F P Sbjct: 157 RAIMAASIVAKVTRDRLMYELHTRHPEYRFDQHKGYSTPVHLAALQTHGPCPQHRRSFAP 216 Query: 204 LR 205 +R Sbjct: 217 VR 218 >gi|164688555|ref|ZP_02212583.1| hypothetical protein CLOBAR_02200 [Clostridium bartlettii DSM 16795] gi|164602968|gb|EDQ96433.1| hypothetical protein CLOBAR_02200 [Clostridium bartlettii DSM 16795] Length = 255 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/184 (45%), Positives = 118/184 (64%), Gaps = 6/184 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + G+DE GRG LAGPVV + ++ + IP+ INDSKK+S KREEL++ I A+ I Sbjct: 75 IGGVDEAGRGPLAGPVVASVVVFEKGTKIPY-INDSKKLSEAKREELFDIIKEQALDYGI 133 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 ++ ID++NI AT A+ A+ L+ P L+D +IP DL + F +IKGD+ S Sbjct: 134 GIVDNEEIDEYNILNATYMAMNKALNALKKKPDYLLLDAVTIP-DLDIKQFPIIKGDAKS 192 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +SIA ASI+AKVTRDRLM + YP YGF H GY T +H + I++ G + IHR +F Sbjct: 193 ISIAGASILAKVTRDRLMYKYDEIYPQYGFKHHKGYGTKEHYEAIEKYGITPIHRKSF-- 250 Query: 204 LRNL 207 L+N+ Sbjct: 251 LKNV 254 >gi|300311507|ref|YP_003775599.1| ribonuclease HII protein [Herbaspirillum seropedicae SmR1] gi|300074292|gb|ADJ63691.1| ribonuclease HII protein [Herbaspirillum seropedicae SmR1] Length = 210 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 78/183 (42%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 + G+DE GRG LAGPV AA+ILDP G+ DSKK++ R+ L +I +SA+ +++ Sbjct: 20 ICGVDEAGRGPLAGPVFAAAVILDPARPVKGLRDSKKLTEAARDSLALEIKASALAWAVA 79 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S + Q ID+ NI A++ A+ AVE L +P ALIDG P + ++ A++KGD Sbjct: 80 SCNEQEIDELNILHASMLAMRRAVEALSTLPTLALIDGNRCPV-MSIRSEAIVKGDDKVP 138 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AK RD + + H YP YGFD H GYPT H ++++ G S +HR ++ P+ Sbjct: 139 AISAASILAKTARDAALMVLHDTYPHYGFDRHKGYPTPLHLEMLRLHGVSPVHRRSYAPV 198 Query: 205 RNL 207 + L Sbjct: 199 KAL 201 >gi|88706742|ref|ZP_01104444.1| Ribonuclease HII [Congregibacter litoralis KT71] gi|88699063|gb|EAQ96180.1| Ribonuclease HII [Congregibacter litoralis KT71] Length = 204 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 86/181 (47%), Positives = 117/181 (64%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + G+DEVGRG LAG VV AA +LDP N G+ DSKK++ K+RE L E++ + A I++ Sbjct: 19 IVGVDEVGRGPLAGDVVAAAAVLDPANPIVGLTDSKKLTAKRREVLREELLTRARGIALG 78 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID NI +A+L A++ AV+ L + P L+DGR +P + AV+KGD+ Sbjct: 79 RASPVEIDTLNILQASLLAMWRAVDALGLEPDLVLVDGRQLPS-WDYASIAVVKGDARVP 137 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV RD+ M H +P YGFD H GYPTA H +K G S +HR +F P+ Sbjct: 138 AIAAASIVAKVARDQYMCEQHALWPHYGFDRHKGYPTAAHMAALKTYGVSPLHRRSFAPV 197 Query: 205 R 205 R Sbjct: 198 R 198 >gi|253702077|ref|YP_003023266.1| ribonuclease HII [Geobacter sp. M21] gi|259494065|sp|C6E5I4|RNH2_GEOSM RecName: Full=Ribonuclease HII; Short=RNase HII gi|251776927|gb|ACT19508.1| Ribonuclease H [Geobacter sp. M21] Length = 230 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 95/190 (50%), Positives = 122/190 (64%), Gaps = 4/190 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 LE + + +AGIDE GRG LAGPVV AA+IL P + G+NDSK+++ +KREEL++ Sbjct: 18 LEGQALRRGFFRIAGIDEAGRGPLAGPVVAAAVILPPGLLLPGVNDSKQLTEEKREELFD 77 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS-IPEDLPC 131 I A+ + + H +D+ NI +ATL A+ AV L + P LIDG S IP ++P Sbjct: 78 VIHREALAVGVGIGDHALVDRINILQATLSAMRDAVRALSMTPGFLLIDGISNIPMNIPQ 137 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + V KGDS+SLSIA+ASIIAKVTRDR+M +YP YGF SH GY A H I E Sbjct: 138 RT--VKKGDSLSLSIASASIIAKVTRDRMMVEYDAQYPGYGFASHKGYGAASHLAAIAEL 195 Query: 192 GPSCIHRLTF 201 GP IHR TF Sbjct: 196 GPCPIHRKTF 205 >gi|319937633|ref|ZP_08012037.1| ribonuclease [Coprobacillus sp. 29_1] gi|319807275|gb|EFW03887.1| ribonuclease [Coprobacillus sp. 29_1] Length = 210 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 80/198 (40%), Positives = 125/198 (63%), Gaps = 5/198 (2%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 ER +E A K+ + G+DE GRG +AGP+VVA +I + INDSK++S KK Sbjct: 3 ERLRYEKAAYALGKSY--IIGLDEAGRGPMAGPLVVAGVIFEKGYYHEAINDSKQLSEKK 60 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE LY+ I A+ I + +D+ N+++A+ + A+ ++ + P AL D + Sbjct: 61 RESLYDLIIRDALAYQIEIIDVEDVDRLNVYQASKKGMIDAIHHIAIQPDFALSDAMPLG 120 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 +++ A +IKGDS+S+SI AASI+AKVTRDR+M+ +YP+YGF H GYPT +H++ Sbjct: 121 DEIAHNA--IIKGDSLSMSIGAASILAKVTRDRIMKKYDLQYPEYGFAQHKGYPTKQHKE 178 Query: 187 VIKEKGPSCIHRLTFRPL 204 ++K G + IHR +F+P+ Sbjct: 179 LLKMYGVTPIHRRSFQPV 196 >gi|315300687|gb|EFU59914.1| ribonuclease HII [Escherichia coli MS 16-3] Length = 198 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 86/182 (47%), Positives = 110/182 (60%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P+ LP + AV+ GDS Sbjct: 72 RAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVTGDSRVP 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P+ Sbjct: 131 EISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGPV 190 Query: 205 RN 206 + Sbjct: 191 KR 192 >gi|229824939|ref|ZP_04451008.1| hypothetical protein GCWU000182_00288 [Abiotrophia defectiva ATCC 49176] gi|229790942|gb|EEP27056.1| hypothetical protein GCWU000182_00288 [Abiotrophia defectiva ATCC 49176] Length = 255 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 89/178 (50%), Positives = 112/178 (62%), Gaps = 3/178 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG LAGPVV AA+I + I +NDSKK++ KREEL+ I AI + Sbjct: 72 ICGIDEVGRGPLAGPVVAAAVIFPKDLIIPYVNDSKKLTEAKREELFNHIMCEAISVGFG 131 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLPCQAFAVIKGDSIS 143 S + ID+ NI ++T +A+ AV L V P L+DG + IPE L A++ GD+ S Sbjct: 132 SVDNSRIDEINILQSTFEAMRKAVSELNVKPDIILVDGDKKIPE-LDISQQAIVGGDAKS 190 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 LSIAAASI+AKV RDR M+ KYP Y F S+ GY + KH IKE G S IHR TF Sbjct: 191 LSIAAASIVAKVVRDRYMKEMDIKYPMYDFASNKGYGSKKHLTGIKEFGISPIHRKTF 248 >gi|89365772|dbj|BAE86854.1| RNase HII [Shewanella sp. SIB1] Length = 212 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 86/182 (47%), Positives = 117/182 (64%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDPN G+NDSKK+S K+R LY++I +A+ +S+ Sbjct: 24 VAGVDEVGRGPLIGDVVTAAVILDPNKPIVGLNDSKKLSEKRRNALYQQIMDNALSVSVG 83 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID+ NI AT+ A+ AV L ++P L+DG +P D + A+IKGD + Sbjct: 84 RASPAEIDELNILHATMLAMQRAVAGLSILPERVLVDGNRVP-DFGIASHAIIKGDGLVA 142 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASIIAKVTRD M + +YP YGF H GYPT H + + G HR +F+P+ Sbjct: 143 AISAASIIAKVTRDAEMDMLDSQYPQYGFAKHKGYPTKAHFEALALYGVLPEHRKSFKPV 202 Query: 205 RN 206 + Sbjct: 203 AD 204 >gi|307244425|ref|ZP_07526536.1| ribonuclease HII [Peptostreptococcus stomatis DSM 17678] gi|306492244|gb|EFM64286.1| ribonuclease HII [Peptostreptococcus stomatis DSM 17678] Length = 263 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 94/184 (51%), Positives = 122/184 (66%), Gaps = 6/184 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG LAGPVV A ++L PN GINDSKK+S +KR+ LY+ I + AI I Sbjct: 84 VAGLDEVGRGPLAGPVVAAVVVLKPNARIEGINDSKKLSEEKRDALYDIIINEAIDYGIG 143 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 A + ID+HNI AT A+ A+E L+V L D IP D+P +IKGD+ S Sbjct: 144 MADNFEIDEHNILNATYIAMRRALEKLEVEVDCLLNDAVRIPGVDIP--QMPIIKGDAKS 201 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +SIAAASI+AKVTRDR+M K+YP YGF S+ GY T+ H Q +++ G + IHR +F Sbjct: 202 ISIAAASIVAKVTRDRMMVDYDKEYPGYGFASNKGYGTSDHYQGLEKFGRTKIHRNSF-- 259 Query: 204 LRNL 207 L+NL Sbjct: 260 LKNL 263 >gi|332711237|ref|ZP_08431170.1| RNase HII [Lyngbya majuscula 3L] gi|332350051|gb|EGJ29658.1| RNase HII [Lyngbya majuscula 3L] Length = 209 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/183 (45%), Positives = 117/183 (63%), Gaps = 5/183 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI- 80 VAG+DEVGRGAL GPVV AA+IL + +P G+ DSKK+S K+R+ L E+I A+ Sbjct: 22 VAGVDEVGRGALFGPVVAAAVILPVSVLPQLALAGVKDSKKLSRKRRQRLSEEIQGLALD 81 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 +I A+ ID+ NI +A+L A+ AV L+V P LIDG + DLP ++KGD Sbjct: 82 WTIGYATSAEIDQLNILQASLLAMKRAVLKLKVKPDICLIDGLQVLPDLPIAQRNLVKGD 141 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 SL IAAASI+AKV RD L+ KY +Y +++GY T KH+ +++ GP +HR++ Sbjct: 142 QRSLHIAAASIVAKVWRDDLIIRLAAKYSEYDLTANMGYGTKKHRLALQKYGPCRLHRMS 201 Query: 201 FRP 203 F P Sbjct: 202 FSP 204 >gi|160939135|ref|ZP_02086486.1| hypothetical protein CLOBOL_04029 [Clostridium bolteae ATCC BAA-613] gi|158438098|gb|EDP15858.1| hypothetical protein CLOBOL_04029 [Clostridium bolteae ATCC BAA-613] Length = 222 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 91/205 (44%), Positives = 121/205 (59%), Gaps = 8/205 (3%) Query: 8 ERPHFELEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 E+ LEAM + + + GIDE GRG LAGPV A++L +NDSKK+ Sbjct: 14 EQEMARLEAMAEYEKEYDACTYICGIDEAGRGPLAGPVAAGAVVLPKGCRILYLNDSKKL 73 Query: 64 SHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S K+REEL+ +I A+ ++ AS ID+ NI +AT +A+ AV+ L V P L D Sbjct: 74 SEKRREELFLEIKEKAVAWNVGLASPARIDEINILQATYEAMREAVKGLSVKPEVLLNDA 133 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 +IP L +IKGD+ SLSIAAASI+AKVTRD +M + +P YGF H GY TA Sbjct: 134 VTIP-GLEGVQVPIIKGDAKSLSIAAASILAKVTRDHMMAEYEELFPGYGFAKHKGYGTA 192 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 H I+E GP IHR +F +RN+ Sbjct: 193 AHIAAIRELGPCPIHRRSF--IRNI 215 >gi|42520908|ref|NP_966823.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila melanogaster] gi|99034585|ref|ZP_01314549.1| hypothetical protein Wendoof_01000635 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|73917837|sp|Q73G60|RNH2_WOLPM RecName: Full=Ribonuclease HII; Short=RNase HII gi|42410649|gb|AAS14757.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila melanogaster] Length = 198 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 88/196 (44%), Positives = 123/196 (62%), Gaps = 6/196 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII-LDPNNIPFGINDSKKISHKKR 68 P F LE K +AG+DEVGRG LAGPV+ AA++ +D N I GINDSKK++ + R Sbjct: 4 PDFTLE----NKLSGVIAGVDEVGRGPLAGPVISAAVVFIDRNTIIDGINDSKKLTPQCR 59 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + LYEKITS A I AS + I+ +NI +AT ++ A+ +L + L+DG PE Sbjct: 60 QVLYEKITSVAKFGIGMASVEEINSYNILQATKLSMKRALIDLDLELDYVLVDGNQPPE- 118 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + Q +++ GD++S SIAAASI+AKVTRDRLM+ H K+P+Y + + GY T +H I Sbjct: 119 VKWQVKSIVNGDNLSTSIAAASIVAKVTRDRLMQELHNKHPEYNWYKNKGYGTKEHLNAI 178 Query: 189 KEKGPSCIHRLTFRPL 204 G + HR F P+ Sbjct: 179 GLYGITEHHRKNFAPI 194 >gi|94497432|ref|ZP_01304002.1| Ribonuclease H [Sphingomonas sp. SKA58] gi|94423063|gb|EAT08094.1| Ribonuclease H [Sphingomonas sp. SKA58] Length = 199 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 83/183 (45%), Positives = 114/183 (62%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DE GRG LAGPVV AA+IL ++ P G+NDSK++S KKR L ++ + A+ I Sbjct: 15 VAGVDEAGRGPLAGPVVAAAVILRADDCPDGLNDSKQLSAKKRAALEAQVKARALCWGIG 74 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID NI AT+ A+ AVE L L+DG P+ + AV+ GD+ L Sbjct: 75 VASVAEIDDLNILWATMLAMTRAVEALSADCAHVLVDGNRCPQ-WRWASTAVVDGDAKCL 133 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASI+AK RDR+M A +P YG++S+ GY +A H ++E GP+ +HR +F P+ Sbjct: 134 SIAAASILAKEERDRMMIAAAADHPHYGWESNKGYGSAHHLAALREHGPTPLHRRSFSPV 193 Query: 205 RNL 207 L Sbjct: 194 AQL 196 >gi|220915421|ref|YP_002490725.1| Ribonuclease H [Anaeromyxobacter dehalogenans 2CP-1] gi|219953275|gb|ACL63659.1| Ribonuclease H [Anaeromyxobacter dehalogenans 2CP-1] Length = 283 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 81/192 (42%), Positives = 116/192 (60%), Gaps = 2/192 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 EA + E+ + VAG+DE G LAGPVV A +L + P GI+DSK++ +RE L E Sbjct: 69 EAELWERGLVRVAGVDEAGMAPLAGPVVAGACVLPLDYRPRGIDDSKQLDRAERERLAED 128 Query: 75 ITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I +A+ +++ A + ID+ NI+ A + A+ AV+ L P L+D R +P DLP Sbjct: 129 IKRNAVCWAVARADVEEIDRLNIYWAGMLALRRAVDGLSARPEHLLVDARKLP-DLPFPQ 187 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++ GD++SL+IAAASI+AK RD LM +P YGF H GYPTA+H + + G Sbjct: 188 TPIVHGDALSLTIAAASILAKTARDALMAELDLVHPGYGFARHKGYPTAEHFEALGRLGA 247 Query: 194 SCIHRLTFRPLR 205 IHR +F P+R Sbjct: 248 CPIHRRSFTPVR 259 >gi|297538517|ref|YP_003674286.1| Ribonuclease H [Methylotenera sp. 301] gi|297257864|gb|ADI29709.1| Ribonuclease H [Methylotenera sp. 301] Length = 194 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/189 (45%), Positives = 119/189 (62%), Gaps = 8/189 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 + G DE GRG LAG V AA+IL+P+ G+ DSKK+S KKR+ L +I A+ +I+ Sbjct: 7 ICGADEAGRGPLAGAVYAAAVILNPDRPIIGLADSKKLSEKKRDLLSVEIKQYALAWAIA 66 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQV----IPRSALIDGRSIPE-DLPCQAFAVIKG 139 S S Q ID+ NI +A+L A+ A+E +QV P +DG P+ LPC+A ++KG Sbjct: 67 SCSAQEIDEINILQASLLAMKRAIEAMQVQFGITPDLVQVDGNKCPKISLPCEA--IVKG 124 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS +I+AASI+AKV RD + K YP YGF H GYPTA H Q++ G + +HRL Sbjct: 125 DSKVQAISAASILAKVARDAELYELDKIYPQYGFAKHKGYPTAFHLQMLDAHGVTPVHRL 184 Query: 200 TFRPLRNLS 208 ++ P+R LS Sbjct: 185 SYAPVRRLS 193 >gi|148269157|ref|YP_001243617.1| ribonuclease HII [Thermotoga petrophila RKU-1] gi|170287819|ref|YP_001738057.1| ribonuclease H [Thermotoga sp. RQ2] gi|281411455|ref|YP_003345534.1| Ribonuclease H [Thermotoga naphthophila RKU-10] gi|166226666|sp|A5IIL8|RNH2_THEP1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|238688861|sp|B1LC19|RNH2_THESQ RecName: Full=Ribonuclease HII; Short=RNase HII gi|147734701|gb|ABQ46041.1| RNase HII [Thermotoga petrophila RKU-1] gi|170175322|gb|ACB08374.1| Ribonuclease H [Thermotoga sp. RQ2] gi|281372558|gb|ADA66120.1| Ribonuclease H [Thermotoga naphthophila RKU-10] Length = 238 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 88/188 (46%), Positives = 115/188 (61%), Gaps = 4/188 (2%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 +K VAG+DE GRG LAGPVV AA++L+ GINDSK++S KRE L+++I A Sbjct: 8 KKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKE--IEGINDSKQLSPAKRERLFDEIMGKA 65 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 + I AS + ID HNI AT A+ A+ENL V P L+DG+ I +P ++KG Sbjct: 66 AVGIGIASPEEIDLHNIFNATKLAMNRALENLSVGPSFVLVDGKGIELRVPGTC--LVKG 123 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D S I AASI+AKV RDRLM HK YP + F H GY T +H I++ G IHR+ Sbjct: 124 DQKSKLIGAASIVAKVFRDRLMSEFHKMYPQFSFHKHKGYATKEHLNEIRKNGVLPIHRM 183 Query: 200 TFRPLRNL 207 +F P+ L Sbjct: 184 SFEPVLEL 191 >gi|329912123|ref|ZP_08275683.1| Ribonuclease HII [Oxalobacteraceae bacterium IMCC9480] gi|327545705|gb|EGF30849.1| Ribonuclease HII [Oxalobacteraceae bacterium IMCC9480] Length = 188 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 80/183 (43%), Positives = 114/183 (62%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 + G+DE GRG LAGPV AA+ILDP + G+ DSKK++ +R+ L +I + A+ SI+ Sbjct: 1 MCGVDEAGRGPLAGPVFAAAVILDPAHPIAGLRDSKKLTEARRDALAIEIKAHALAWSIA 60 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SH ID NI +A+L A+ AV+ L P ALIDG P + ++ A++ GD Sbjct: 61 ECSHHEIDAINILQASLLAMKRAVDTLPTTPTLALIDGNRCPV-MTVRSIAIVGGDDKVD 119 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AK RD + + H YPDY FD H GYPTA H + ++ G S +HR ++ P+ Sbjct: 120 AISAASILAKTARDAALVVLHADYPDYAFDRHKGYPTALHLERLRLHGVSPVHRRSYAPV 179 Query: 205 RNL 207 R L Sbjct: 180 RRL 182 >gi|182625835|ref|ZP_02953601.1| ribonuclease HII [Clostridium perfringens D str. JGS1721] gi|177908869|gb|EDT71361.1| ribonuclease HII [Clostridium perfringens D str. JGS1721] Length = 272 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 96/221 (43%), Positives = 125/221 (56%), Gaps = 21/221 (9%) Query: 5 SIPERPHFELEAMVRE----KNMWP----------VAGIDEVGRGALAGPVVVAAIILDP 50 S+ R L +++E KNM+ VAG+DEVGRG LAGP+V AA+ILD Sbjct: 54 SLGNRLEKNLNNLIKEEERVKNMYLFDKSFGDYKYVAGVDEVGRGPLAGPIVSAAVILDS 113 Query: 51 ---NNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYH 106 ++I INDSKK+S KREEL E I A+ SIS + ID+ I Sbjct: 114 SDLDDIILYINDSKKLSEHKREELSEIIKEKALSYSISMCDSKEIDEKGIGYCNNHVFIK 173 Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 A E L + P L DG I ++ + VIKGD+ S IA ASIIAKV RD +M+ HK Sbjct: 174 ACEGLNIKPDLVLSDGYLI-KNFNGENKHVIKGDTKSACIACASIIAKVYRDNIMKEYHK 232 Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 KYP Y F+ +VGY T H +KE GP+ IHR++F L+N+ Sbjct: 233 KYPQYDFEKNVGYGTKTHVDALKEVGPTEIHRMSF--LKNI 271 >gi|146276125|ref|YP_001166284.1| ribonuclease HII [Rhodobacter sphaeroides ATCC 17025] gi|166226645|sp|A4WNL5|RNH2_RHOS5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|145554366|gb|ABP68979.1| Ribonuclease H [Rhodobacter sphaeroides ATCC 17025] Length = 212 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 84/198 (42%), Positives = 124/198 (62%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + E+ + + G+DEVGRG LAGPV AA+ L P IP G+NDSKK+ +RE Sbjct: 6 PDWSHESAAFAEGFTCIVGVDEVGRGPLAGPVTAAAVRLFPGRIPEGLNDSKKLPAARRE 65 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L +I + A +S++ AS + ID+ NI +A+ A+ A+ L P ALIDG IP+ L Sbjct: 66 ALAAEILAVAEVSVAHASVEEIDRLNILQASHLAMARALAGLPCPPDFALIDGHLIPKGL 125 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + A++KGD++ LSIAAASI+AKV RDR+M +++P YG+ ++ GY T H Q + Sbjct: 126 AHRCRAIVKGDALCLSIAAASIVAKVARDRIMVDLEQQHPGYGWRTNAGYGTRDHLQALL 185 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + HR +F+P+ N+ Sbjct: 186 NLGLTPHHRRSFKPVHNI 203 >gi|239815594|ref|YP_002944504.1| ribonuclease HII [Variovorax paradoxus S110] gi|239802171|gb|ACS19238.1| Ribonuclease H [Variovorax paradoxus S110] Length = 240 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 80/180 (44%), Positives = 115/180 (63%), Gaps = 2/180 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DE GRG LAGPVV AA+ILD G+ DSK ++ +RE L ++I + A+ S++ Sbjct: 22 VAGVDEAGRGPLAGPVVAAAVILDDQRPIRGLADSKTLTALQRERLNDQILAKALCCSVA 81 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A+ + ID HNI +AT+ A+ AVE L++ P L+DG +P L A A++KGD+ Sbjct: 82 QATVEEIDTHNILQATMLAMRRAVEGLRLKPAKVLVDGNRLP-TLDVLAEAIVKGDARIK 140 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKV RDRL H ++P YGF H GY T +H + ++ G HR +F P+ Sbjct: 141 AISAASILAKVHRDRLCEQLHLEFPHYGFAGHKGYGTPEHLEALQRHGACIHHRRSFSPV 200 >gi|308048683|ref|YP_003912249.1| RNase HII [Ferrimonas balearica DSM 9799] gi|307630873|gb|ADN75175.1| RNase HII [Ferrimonas balearica DSM 9799] Length = 191 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/181 (46%), Positives = 114/181 (62%), Gaps = 1/181 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S K+RE LY +I A+ ++ Sbjct: 5 IAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLRDSKKLSEKRREALYHEIREKALAWCVA 64 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID+ NI AT+ A+ AV L V P +DG P+ A A++KGD Sbjct: 65 RASVAEIDQLNILHATMLAMQRAVAGLPVQPDFVRVDGNRCPDFGGIGAEALVKGDDKEP 124 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKVTRD M+ +++P YGF +H GYPTA H + E G HR +F+P+ Sbjct: 125 AISAASILAKVTRDEEMKALDQRHPQYGFANHKGYPTAAHLAALAEHGALPEHRTSFKPV 184 Query: 205 R 205 R Sbjct: 185 R 185 >gi|311030147|ref|ZP_07708237.1| Ribonuclease H [Bacillus sp. m3-13] Length = 256 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 84/202 (41%), Positives = 125/202 (61%), Gaps = 9/202 (4%) Query: 13 ELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 + E M + E+ +W +AGIDEVGRG LAGPVV AA+IL + G+ DSKK++ + Sbjct: 55 QFEEMKKYERPLWDKGCRYIAGIDEVGRGPLAGPVVAAAVILPEDFHLPGLTDSKKLNAQ 114 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KRE + + AI I + ID+ NI++AT A+ AV+NL P LID + Sbjct: 115 KREHFFRYVKEHAISYGIGIIDSREIDQVNIYEATKLAMVQAVKNLHHTPEHLLIDAMKL 174 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 DL + ++IKGD+ S+SIAAAS++AK TRD M+ +++PDYGFD ++GY T +H Sbjct: 175 --DLDIEQTSIIKGDATSISIAAASVLAKETRDTYMKNLAQEFPDYGFDKNMGYGTPEHL 232 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 ++E G + HR +F P++ + Sbjct: 233 LALQETGVTREHRQSFSPVKEM 254 >gi|224825027|ref|ZP_03698133.1| Ribonuclease H [Lutiella nitroferrum 2002] gi|224602698|gb|EEG08875.1| Ribonuclease H [Lutiella nitroferrum 2002] Length = 193 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 80/181 (44%), Positives = 113/181 (62%), Gaps = 1/181 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DE GRG LAG V AA+ILDP G+ DSKK+S K+R+EL I ++ I+ Sbjct: 2 IAGVDEAGRGPLAGAVFAAAVILDPARPIVGLADSKKLSEKQRDELAPLIRERSLAWCIA 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS ID+ NI +AT+ A+ AV L V+P LIDG +P+ + A A++KGD++ Sbjct: 62 SASVDEIDRLNILQATMLAMSRAVAGLSVLPAEVLIDGNRVPKGIAVPARAIVKGDALEP 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AK RD + +P++GF H GYPTA+H I+ G HR TF P+ Sbjct: 122 AISAASILAKTARDAELVALDALHPEFGFARHKGYPTAEHLAAIERFGVLPEHRRTFGPV 181 Query: 205 R 205 + Sbjct: 182 K 182 >gi|255281039|ref|ZP_05345594.1| ribonuclease HII [Bryantella formatexigens DSM 14469] gi|255268487|gb|EET61692.1| ribonuclease HII [Bryantella formatexigens DSM 14469] Length = 252 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/187 (45%), Positives = 118/187 (63%), Gaps = 12/187 (6%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDE GRG LAGPVV A+IL +NDSK++S K RE+LY++I A+ + + Sbjct: 72 ICGIDEAGRGPLAGPVVAGAVILPKGCTIRYLNDSKQLSEKMREQLYDEIMERAVAVGVG 131 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP----EDLPCQAFAVIKGD 140 AS ID+ NI +AT +A+ A+ L V P L D IP E +P ++KGD Sbjct: 132 MASPARIDEINILQATYEAMRDAIGALSVRPDILLNDAVRIPGTDIEQVP-----IVKGD 186 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + SLSIAAAS+IAKVTRDRLM+ P+YGF +H GY +A H + +++ GPS IHR + Sbjct: 187 AKSLSIAAASVIAKVTRDRLMKEYDALMPEYGFAAHKGYGSAAHIEALRQYGPSPIHRAS 246 Query: 201 FRPLRNL 207 F L+N+ Sbjct: 247 F--LKNI 251 >gi|295696077|ref|YP_003589315.1| Ribonuclease H [Bacillus tusciae DSM 2912] gi|295411679|gb|ADG06171.1| Ribonuclease H [Bacillus tusciae DSM 2912] Length = 240 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/205 (41%), Positives = 126/205 (61%), Gaps = 5/205 (2%) Query: 4 NSIPERP---HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 IP RP + E K +AG+DE G G LAGPVV AA++L + G+ DS Sbjct: 7 RGIPTRPPGLGWNWEQYWWTKGYSRIAGVDEAGVGPLAGPVVAAAVVLPKDFDVAGLGDS 66 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 K+++ ++REE ++++ A+ + ++ ID+ NI +A A+ AV L + L Sbjct: 67 KRLTARQREEQFKRLRRDAVALEVAVVDADLIDRLNILQAARLAMRRAVAALGERCEAVL 126 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 +DGR++P D+P + AV++GD+ S SIAAASI+AKVTRDRLM ++YP YGF+ H GY Sbjct: 127 VDGRTVP-DMPAPSLAVVRGDAQSPSIAAASIVAKVTRDRLMVEYGQRYPGYGFERHKGY 185 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPL 204 PTA H + ++ GP IHR +F P+ Sbjct: 186 PTAAHLEALERLGPCPIHRRSFGPV 210 >gi|302386482|ref|YP_003822304.1| Ribonuclease H [Clostridium saccharolyticum WM1] gi|302197110|gb|ADL04681.1| Ribonuclease H [Clostridium saccharolyticum WM1] Length = 213 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 83/177 (46%), Positives = 109/177 (61%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 V GIDE GRG LAGPVV A+IL + +NDSKK+S K+RE L+E+I A ++ Sbjct: 32 VCGIDEAGRGPLAGPVVAGAVILPRDCEILFLNDSKKLSEKRREALFEEIMEKASAFAVG 91 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 ID+ NI +AT +A+ AV L++ P L D +IP + +IKGD S+ Sbjct: 92 VVGADRIDEINILQATYEAMRLAVAKLEIEPNVFLNDAVTIP-GIAASQVPIIKGDGKSV 150 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASI+AKVTRD +M K +P+YGF H GY TA H + +KE GP IHR +F Sbjct: 151 SIAAASIMAKVTRDHMMEEYDKLFPEYGFSRHKGYGTAVHMKALKEFGPCPIHRRSF 207 >gi|168210661|ref|ZP_02636286.1| ribonuclease HII [Clostridium perfringens B str. ATCC 3626] gi|170711299|gb|EDT23481.1| ribonuclease HII [Clostridium perfringens B str. ATCC 3626] Length = 272 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 96/221 (43%), Positives = 125/221 (56%), Gaps = 21/221 (9%) Query: 5 SIPERPHFELEAMVRE----KNMWP----------VAGIDEVGRGALAGPVVVAAIILDP 50 S+ R L +++E KNM+ VAG+DEVGRG LAGP+V AA+ILD Sbjct: 54 SLGNRLEKNLNNLIKEEERVKNMYLFDNSFGDYKYVAGVDEVGRGPLAGPIVSAAVILDS 113 Query: 51 ---NNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYH 106 ++I INDSKK+S KREEL E I A+ SIS + ID+ I Sbjct: 114 SDLDDIILYINDSKKLSEHKREELSEIIKEKALSYSISMCDSKEIDEKGIGYCNNHVFIK 173 Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 A E L + P L DG I ++ + VIKGD+ S IA ASIIAKV RD +M+ HK Sbjct: 174 ACEGLSIKPDLVLSDGYLI-KNFNGENKHVIKGDTKSACIACASIIAKVYRDNIMKEYHK 232 Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 KYP Y F+ +VGY T H +KE GP+ IHR++F L+N+ Sbjct: 233 KYPQYDFEKNVGYGTKTHVDALKEVGPTEIHRMSF--LKNI 271 >gi|262038337|ref|ZP_06011718.1| ribonuclease HII [Leptotrichia goodfellowii F0264] gi|261747641|gb|EEY35099.1| ribonuclease HII [Leptotrichia goodfellowii F0264] Length = 205 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 83/181 (45%), Positives = 112/181 (61%), Gaps = 7/181 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84 + G+DE GRG LAGPVV AA+I+ INDSKK+S KKRE+L+E I I+ Sbjct: 15 IVGVDEAGRGPLAGPVVAAAVIIIQYFKELDEINDSKKLSEKKREQLFELIKEKCIVGTG 74 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRS----ALIDGRSIPEDLPCQAFAVIKGD 140 A + ID+ NI AT A+ A+ +V +S L+DG + AVIKGD Sbjct: 75 IADEKEIDEINILNATFSAMRKAIN--EVKEKSDFDIVLVDGNHKIRKYEGEQEAVIKGD 132 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S SLSIAAASI+AKVTRD++M+ +++P+Y FD H GY T H++++ +KGP HR T Sbjct: 133 SKSLSIAAASIVAKVTRDKMMKEMSEEFPEYRFDKHKGYATKLHREILLKKGPCKYHRKT 192 Query: 201 F 201 F Sbjct: 193 F 193 >gi|148284488|ref|YP_001248578.1| ribonuclease HII [Orientia tsutsugamushi str. Boryong] gi|189043633|sp|A5CDI4|RNH2_ORITB RecName: Full=Ribonuclease HII; Short=RNase HII gi|146739927|emb|CAM79925.1| ribonuclease HII [Orientia tsutsugamushi str. Boryong] Length = 205 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/183 (46%), Positives = 121/183 (66%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 VAG+DE GRG LAGPVV AA++++ + + I DSK +S KRE Y+KIT+S SI Sbjct: 16 VAGVDEAGRGPLAGPVVAAAVVVNQSIMIDDIKDSKVLSKSKRESCYDKITNSYYYSIGI 75 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS Q IDK+NI +AT A AV+NL +IP L+DG D + ++++GD I S Sbjct: 76 ASVQEIDKYNILEATKLACIRAVKNLAIIPTKVLVDGNMNFTD--NRFISIVRGDQICYS 133 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I++ASI+AKVTRDR+M+I HK+YP YG++ + GY T H IK G + HR++F+ Sbjct: 134 ISSASIVAKVTRDRIMQILHKEYPVYGWNQNCGYGTKLHIDAIKTYGQTIHHRVSFKFKG 193 Query: 206 NLS 208 N++ Sbjct: 194 NIN 196 >gi|332140483|ref|YP_004426221.1| ribonuclease HII [Alteromonas macleodii str. 'Deep ecotype'] gi|254807962|sp|B4RVJ6|RNH2_ALTMD RecName: Full=Ribonuclease HII; Short=RNase HII gi|327550505|gb|AEA97223.1| ribonuclease HII [Alteromonas macleodii str. 'Deep ecotype'] Length = 190 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/183 (46%), Positives = 112/183 (61%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK+S KKR L ++I A+ +I Sbjct: 5 IAGVDEVGRGPLVGDVVTAAVILDPQNPIEGLTDSKKLSEKKRVALAQEIREKALYWNIG 64 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + IDK NI AT+ A+ AVE L V P +DG +P + AV+KGDS+ Sbjct: 65 RASPEEIDKLNILHATMLAMIRAVEGLPVKPDFVRVDGNRLPA-WNFDSEAVVKGDSLHA 123 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKV RD M H+ +P Y F H GYPT H + I E G +R +F+P+ Sbjct: 124 EISAASIIAKVERDNDMISLHEAFPQYNFAGHKGYPTKAHFEAIAEYGILDCYRKSFKPV 183 Query: 205 RNL 207 + L Sbjct: 184 KAL 186 >gi|146328634|ref|YP_001209596.1| ribonuclease HII [Dichelobacter nodosus VCS1703A] gi|189043593|sp|A5EV63|RNH2_DICNV RecName: Full=Ribonuclease HII; Short=RNase HII gi|146232104|gb|ABQ13082.1| ribonuclease HII [Dichelobacter nodosus VCS1703A] Length = 189 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/184 (46%), Positives = 115/184 (62%), Gaps = 4/184 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DE GRGA G VV AA+IL PN+ + DSKK+S KRE L I AI ++ Sbjct: 2 IAGVDEAGRGAWIGNVVAAAVIL-PNDYDLPDLTDSKKLSAAKRERLCAAIYEQAIAVAC 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S + ID+ NIH ATL A+ AV L+V P LIDG+ PE LP +I GD++ Sbjct: 61 AWCSPEEIDQLNIHYATLCAMKKAVITLKVAPTEVLIDGKFAPE-LPFPTRTIIGGDALE 119 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKVTRD+ M YPDYGF +H GY T KHQQ +++ G +HR ++ P Sbjct: 120 PAISAASIVAKVTRDKQMIALDALYPDYGFAAHKGYGTQKHQQALRQFGVLPLHRRSYAP 179 Query: 204 LRNL 207 + L Sbjct: 180 IAAL 183 >gi|110800212|ref|YP_696393.1| ribonuclease HII [Clostridium perfringens ATCC 13124] gi|123049754|sp|Q0TPP7|RNH2_CLOP1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|110674859|gb|ABG83846.1| ribonuclease HII [Clostridium perfringens ATCC 13124] Length = 272 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 96/221 (43%), Positives = 125/221 (56%), Gaps = 21/221 (9%) Query: 5 SIPERPHFELEAMVRE----KNMWP----------VAGIDEVGRGALAGPVVVAAIILDP 50 S+ R L +++E KNM+ VAG+DEVGRG LAGP+V AA+ILD Sbjct: 54 SLGNRLEKNLNNLIKEEERVKNMYLFDKSFGDYKYVAGVDEVGRGPLAGPIVSAAVILDS 113 Query: 51 ---NNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYH 106 ++I INDSKK+S KREEL E I A+ SIS + ID+ I Sbjct: 114 SDLDDIILYINDSKKLSEHKREELSEIIKEKALSYSISMCDSKEIDEKGIGYCNNHVFIK 173 Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 A E L + P L DG I ++ + VIKGD+ S IA ASIIAKV RD +M+ HK Sbjct: 174 ACEGLSIKPDLVLSDGYLI-KNFNGENKHVIKGDTKSACIACASIIAKVYRDNIMKEYHK 232 Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 KYP Y F+ +VGY T H +KE GP+ IHR++F L+N+ Sbjct: 233 KYPQYDFEKNVGYGTKTHVDALKEVGPTEIHRMSF--LKNI 271 >gi|168207943|ref|ZP_02633948.1| ribonuclease HII [Clostridium perfringens E str. JGS1987] gi|170660752|gb|EDT13435.1| ribonuclease HII [Clostridium perfringens E str. JGS1987] Length = 272 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 96/221 (43%), Positives = 125/221 (56%), Gaps = 21/221 (9%) Query: 5 SIPERPHFELEAMVRE----KNMWP----------VAGIDEVGRGALAGPVVVAAIILDP 50 S+ R L +++E KNM+ VAG+DEVGRG LAGP+V AA+ILD Sbjct: 54 SLGNRLEKNLNNLIKEEERVKNMYLFDKSFGDYKYVAGVDEVGRGPLAGPIVSAAVILDS 113 Query: 51 ---NNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYH 106 ++I INDSKK+S KREEL E I A+ SIS + ID+ I Sbjct: 114 SDLDDIILYINDSKKLSEHKREELSEIIKEKALSYSISMCDSKEIDEKGIGYCNNHVFIK 173 Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 A E L + P L DG I ++ + VIKGD+ S IA ASIIAKV RD +M+ HK Sbjct: 174 ACEGLSIKPDLVLSDGYLI-KNFNGENKHVIKGDTKSACIACASIIAKVYRDNIMKEYHK 232 Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 KYP Y F+ +VGY T H +KE GP+ IHR++F L+N+ Sbjct: 233 KYPQYDFEKNVGYGTKTHVDALKEVGPTEIHRMSF--LKNI 271 >gi|33592531|ref|NP_880175.1| ribonuclease HII [Bordetella pertussis Tohama I] gi|33596188|ref|NP_883831.1| ribonuclease HII [Bordetella parapertussis 12822] gi|33601596|ref|NP_889156.1| ribonuclease HII [Bordetella bronchiseptica RB50] gi|39932320|sp|Q7VYB6|RNH2_BORPE RecName: Full=Ribonuclease HII; Short=RNase HII gi|39932326|sp|Q7WA46|RNH2_BORPA RecName: Full=Ribonuclease HII; Short=RNase HII gi|39932331|sp|Q7WJ80|RNH2_BORBR RecName: Full=Ribonuclease HII; Short=RNase HII gi|33572177|emb|CAE41723.1| ribonuclease HII [Bordetella pertussis Tohama I] gi|33573191|emb|CAE36843.1| ribonuclease HII [Bordetella parapertussis] gi|33576032|emb|CAE33112.1| ribonuclease HII [Bordetella bronchiseptica RB50] gi|332381949|gb|AEE66796.1| ribonuclease HII [Bordetella pertussis CS] Length = 201 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 80/181 (44%), Positives = 113/181 (62%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84 +AG+DE GRG LAG V AA+ILDP+ G+ DSK + ++RE L +I + A+ ++ Sbjct: 17 IAGVDEAGRGPLAGAVYAAAVILDPDRPVDGLADSKVLKAEQREALAVQIRAQALAWFVA 76 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS Q ID NI +AT+ A+ AV L + P A++DG P+ L C VIKGD++ Sbjct: 77 SASVQEIDSLNILRATMLAMQRAVAGLAMAPELAMVDGNQAPK-LRCAVQTVIKGDALVP 135 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AK RD + H YP YGFD H GY T +H +++E GP HR +F P+ Sbjct: 136 AISAASILAKTARDADLLRLHALYPQYGFDQHKGYGTPQHLSLLREHGPCPEHRRSFAPI 195 Query: 205 R 205 + Sbjct: 196 K 196 >gi|114562462|ref|YP_749975.1| ribonuclease H [Shewanella frigidimarina NCIMB 400] gi|122300308|sp|Q085C8|RNH2_SHEFN RecName: Full=Ribonuclease HII; Short=RNase HII gi|114333755|gb|ABI71137.1| Ribonuclease H [Shewanella frigidimarina NCIMB 400] Length = 212 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/182 (47%), Positives = 116/182 (63%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDPN G+NDSKK+S K+R LY++I +A+ +S+ Sbjct: 24 VAGVDEVGRGPLIGDVVTAAVILDPNKPIVGLNDSKKLSEKRRNALYQQIMDNALSVSVG 83 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID+ NI AT+ A+ AV L ++P L+DG +P D + A+IKGD + Sbjct: 84 RASPAEIDELNILHATMLAMQRAVAGLSILPERVLVDGNRVP-DFGIASHAIIKGDGLVA 142 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASIIAKVTRD M +YP YGF H GYPT H + + G HR +F+P+ Sbjct: 143 AISAASIIAKVTRDAEMDTLDSQYPQYGFAKHKGYPTKAHFEALALYGVLPDHRKSFKPV 202 Query: 205 RN 206 + Sbjct: 203 AD 204 >gi|169342697|ref|ZP_02863738.1| ribonuclease HII [Clostridium perfringens C str. JGS1495] gi|169299203|gb|EDS81273.1| ribonuclease HII [Clostridium perfringens C str. JGS1495] Length = 272 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 96/221 (43%), Positives = 125/221 (56%), Gaps = 21/221 (9%) Query: 5 SIPERPHFELEAMVRE----KNMWP----------VAGIDEVGRGALAGPVVVAAIILDP 50 S+ R L +++E KNM+ VAG+DEVGRG LAGP+V AA+ILD Sbjct: 54 SLGNRLEKNLNNLIKEEERVKNMYLFDKSFGDYKYVAGVDEVGRGPLAGPIVSAAVILDS 113 Query: 51 NN---IPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYH 106 +N I INDSKK+S KREEL E I A+ SIS + ID+ I Sbjct: 114 SNLDDIILYINDSKKLSEHKREELSEIIKEKALSYSISMCDSKEIDEKGIGYCNNHVFIK 173 Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 A E L + P L DG I ++ + VIKGD+ S IA ASIIAKV RD +M+ HK Sbjct: 174 ACEGLNIKPDLVLSDGYLI-KNFNGENKHVIKGDTKSACIACASIIAKVYRDNIMKEYHK 232 Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 KYP Y F+ +VGY T H +K+ GP+ IHR++F L+N+ Sbjct: 233 KYPQYDFEKNVGYGTKTHVDALKKVGPTEIHRMSF--LKNI 271 >gi|227872391|ref|ZP_03990738.1| ribonuclease H [Oribacterium sinus F0268] gi|227841751|gb|EEJ52034.1| ribonuclease H [Oribacterium sinus F0268] Length = 217 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 89/204 (43%), Positives = 122/204 (59%), Gaps = 18/204 (8%) Query: 14 LEAMVREKNMWP----------VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 L+ R K MW +AG+DE GRG LAGPVV A IL +++ + +NDSKK+ Sbjct: 7 LKEEARLKEMWKLEEEHANLTFIAGVDEAGRGPLAGPVVAATAILPKDHLFYYLNDSKKM 66 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVE----NLQVIPRSA 118 + K+RE L+ +I +AI I S + ID+ NI +AT +A+ A+E N +IP Sbjct: 67 TEKRREALFLEIKENAIAYGIGIVSPERIDEINILQATYEAMRLAIEEMEKNFSIIPSLL 126 Query: 119 LIDGRSIPE-DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 L D IP D+P ++ GD+ SLSIAAAS++AKV+RD LM K+YP+YGF+ H Sbjct: 127 LNDAVRIPMVDIP--QIPIVHGDAKSLSIAAASVLAKVSRDHLMLDYAKEYPEYGFEKHK 184 Query: 178 GYPTAKHQQVIKEKGPSCIHRLTF 201 GY T H + I E GP IHR +F Sbjct: 185 GYGTKAHTEAILEYGPCPIHRRSF 208 >gi|308274702|emb|CBX31301.1| Ribonuclease HII [uncultured Desulfobacterium sp.] Length = 214 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 92/199 (46%), Positives = 125/199 (62%), Gaps = 8/199 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREE 70 +EL A EK +AG+DE GRG +AGPVV AA+IL P + P G+ DSKK++ KKR+ Sbjct: 8 YELSAF--EKGYNKIAGVDEAGRGPIAGPVVSAAVIL-PFSYPIEGVTDSKKLTPKKRDY 64 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPED 128 LY I A+ I I I++ NI +A+L ++ AV+NL LIDG IP Sbjct: 65 LYNIIYERAVSIGIGIVDPAEIERINILRASLLSMSIAVQNLSPESDYLLIDGIFPIPHT 124 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L Q + GDS+SLS+AAASI+AKVTRDRLM H +YP+YGF H GYPT +H++ I Sbjct: 125 LSQQP--IPHGDSLSLSVAAASIVAKVTRDRLMERYHYEYPEYGFIKHKGYPTKEHKEAI 182 Query: 189 KEKGPSCIHRLTFRPLRNL 207 + G IHR +F+ ++ + Sbjct: 183 RRSGCCPIHRRSFKGVKEV 201 >gi|290968507|ref|ZP_06560046.1| ribonuclease HII [Megasphaera genomosp. type_1 str. 28L] gi|290781503|gb|EFD94092.1| ribonuclease HII [Megasphaera genomosp. type_1 str. 28L] Length = 264 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 93/197 (47%), Positives = 126/197 (63%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +E E M + ++ +AGIDE GRG +AGPV++AA+IL P G+NDSKKI+ KRE L Sbjct: 62 YEPENMFYRQGIYEIAGIDEAGRGPVAGPVMIAAVILPPFWECAGLNDSKKIAPSKREAL 121 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YEKI A+ +S + ID +I+ AT +Y AV+ L V P++ L+D + E L Sbjct: 122 YEKIMQEAVAVSCIAKERAEIDVADIYHATRQGMYEAVQALAVPPKAVLVDAMPLSE-LT 180 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++I GD+IS SIAAASIIAKVTRDR+MR K YP YGF H GY T H I++ Sbjct: 181 VPHRSLIHGDAISASIAAASIIAKVTRDRVMREYDKVYPQYGFAVHKGYLTQAHADAIRK 240 Query: 191 KGPSCIHRLTFRPLRNL 207 GP IHR +F P++++ Sbjct: 241 FGPCPIHRHSFEPIKSI 257 >gi|188992332|ref|YP_001904342.1| ribonuclease HII [Xanthomonas campestris pv. campestris str. B100] gi|189043675|sp|B0RW80|RNH2_XANCB RecName: Full=Ribonuclease HII; Short=RNase HII gi|167734092|emb|CAP52298.1| unnamed protein product [Xanthomonas campestris pv. campestris] Length = 240 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 82/183 (44%), Positives = 118/183 (64%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII-SI 83 +AG+DE GRG LAGPV VAA++ DP G++DSK++S ++RE+LY +I A+ S+ Sbjct: 33 IAGVDEAGRGPLAGPVAVAAVVFDPAKPRINGLDDSKQLSAERREQLYARIVDRALAWSV 92 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + ID+ NI++AT+ + AVE + + A IDG +P+ LP A A+I GD++ Sbjct: 93 VLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPFPAEALIGGDALD 152 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I AASI+AKVTRDRLMR H ++P+Y FD H GY T H ++ GP HR +F P Sbjct: 153 RAIMAASIVAKVTRDRLMRELHAQHPEYRFDLHKGYSTPAHLAALQTHGPCPQHRRSFAP 212 Query: 204 LRN 206 +R Sbjct: 213 VRR 215 >gi|227529208|ref|ZP_03959257.1| ribonuclease H [Lactobacillus vaginalis ATCC 49540] gi|227350883|gb|EEJ41174.1| ribonuclease H [Lactobacillus vaginalis ATCC 49540] Length = 260 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 83/195 (42%), Positives = 119/195 (61%), Gaps = 4/195 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F+ E ++ VAG+DEVGRG LAGPVV A+IL P G+ DSK+++ +RE L Sbjct: 63 FKFEKQYWQQGCQYVAGMDEVGRGPLAGPVVTCAVILSPEFDLIGVTDSKQLTRHERENL 122 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DL 129 Y +I + AI +SI+ Q ID+ NI+ AT +A+ +V L P S ++D +P D+ Sbjct: 123 YLQIVNEAIEVSIAVNDSQKIDQLNIYAATQNAMMTSVRQLHHQPESLIVDAVPLPALDI 182 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +IKGD S+S+AAASI+AK RD LMR + YP Y F ++GY T KH ++ Sbjct: 183 P--QTTLIKGDQKSISVAAASIVAKEYRDHLMRDYDRIYPGYDFAENMGYGTKKHLAGLR 240 Query: 190 EKGPSCIHRLTFRPL 204 + G + IHR +F P+ Sbjct: 241 KLGATPIHRRSFNPV 255 >gi|86156706|ref|YP_463491.1| ribonuclease HII [Anaeromyxobacter dehalogenans 2CP-C] gi|97182177|sp|Q2IMM4|RNH2_ANADE RecName: Full=Ribonuclease HII; Short=RNase HII gi|85773217|gb|ABC80054.1| ribonuclease H [Anaeromyxobacter dehalogenans 2CP-C] Length = 283 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 80/192 (41%), Positives = 115/192 (59%), Gaps = 2/192 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 EA + E+ + VAG+DE G LAGPVV A +L + P GI+DSK++ +RE L E Sbjct: 69 EAELWERGLVHVAGVDEAGMAPLAGPVVAGACVLPRDYRPRGIDDSKQLDRAERERLAED 128 Query: 75 ITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I +A+ +++ A + ID+ N++ A + A+ AV+ L P L+D R +P DLP Sbjct: 129 IKRNAVCWAVARAEVEEIDRLNVYWAGMLALRRAVDGLSARPEHLLVDARKLP-DLPFPQ 187 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++ GD++SL+IAAASI+AK RD LM +P YGF H GYPTA+H + G Sbjct: 188 TPIVHGDALSLTIAAASILAKTARDALMAELDLAHPGYGFARHKGYPTAEHFDALGRLGA 247 Query: 194 SCIHRLTFRPLR 205 IHR +F P+R Sbjct: 248 CPIHRRSFAPVR 259 >gi|189184531|ref|YP_001938316.1| ribonuclease HII [Orientia tsutsugamushi str. Ikeda] gi|238692024|sp|B3CUN5|RNH2_ORITI RecName: Full=Ribonuclease HII; Short=RNase HII gi|189181302|dbj|BAG41082.1| ribonuclease HII [Orientia tsutsugamushi str. Ikeda] Length = 205 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 84/183 (45%), Positives = 122/183 (66%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 +AG+DE GRG LAGPVV AA++++ + + I DSK +S KRE Y+KIT++ SI Sbjct: 16 IAGVDEAGRGPLAGPVVAAAVVVNQSIMIDDIKDSKVLSKSKRESCYDKITNNYYYSIGI 75 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS Q IDK+NI +AT A AV+NL +IP L+DG D + ++++GD I S Sbjct: 76 ASVQEIDKYNILEATKLACIRAVKNLAIIPTKVLVDGNMNFTD--NRFISIVRGDQICYS 133 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 IA+ASI+AKVTRDR+M+I H++YP YG++ + GY T H + IK G + HR++F+ Sbjct: 134 IASASIVAKVTRDRMMQILHQEYPVYGWNQNCGYGTKLHIEAIKTYGQTIHHRVSFKFKG 193 Query: 206 NLS 208 N++ Sbjct: 194 NIN 196 >gi|332994191|gb|AEF04246.1| ribonuclease HII [Alteromonas sp. SN2] Length = 191 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 85/183 (46%), Positives = 112/183 (61%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK+S KKR L +I + A+ I Sbjct: 5 IAGVDEVGRGPLVGDVVTAAVILDPANPIVGLTDSKKLSEKKRIALAAEIKAKALYWHIG 64 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A+ + ID NI AT+ A+ AVE L V P +DG +P D P A AV+KGDS+ Sbjct: 65 RATPEEIDTLNILHATMLAMKRAVEGLAVTPDFVRVDGNRLP-DWPYAAEAVVKGDSLYA 123 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKV RD M + +P+YGF H GYPT H + + G +R +F+P+ Sbjct: 124 EISAASIIAKVERDNDMLALDELHPEYGFAGHKGYPTKAHFEALATHGVIDGYRKSFKPV 183 Query: 205 RNL 207 + L Sbjct: 184 KAL 186 >gi|197120709|ref|YP_002132660.1| ribonuclease HII [Anaeromyxobacter sp. K] gi|196170558|gb|ACG71531.1| Ribonuclease H [Anaeromyxobacter sp. K] Length = 283 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 80/192 (41%), Positives = 116/192 (60%), Gaps = 2/192 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 EA + E+ + VAG+DE G LAGPVV A +L + P GI+DSK++ +RE L E Sbjct: 69 EAELWERGLVHVAGVDEAGMAPLAGPVVAGACVLPLDYRPRGIDDSKQLDRAERERLAED 128 Query: 75 ITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I +A+ +++ A + ID+ N++ A + A+ AV+ L P L+D R +P DLP Sbjct: 129 IKRNAVCWAVARAEVEEIDRLNVYWAGMLALRRAVDGLSARPEHLLVDARKLP-DLPFPQ 187 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++ GD++SL+IAAASI+AK RD LM +P YGF H GYPTA+H + + G Sbjct: 188 TPIVHGDALSLTIAAASILAKTARDALMAELDLVHPGYGFARHKGYPTAEHFEALGRLGA 247 Query: 194 SCIHRLTFRPLR 205 IHR +F P+R Sbjct: 248 CPIHRRSFTPVR 259 >gi|315924213|ref|ZP_07920439.1| ribonuclease HII [Pseudoramibacter alactolyticus ATCC 23263] gi|315622615|gb|EFV02570.1| ribonuclease HII [Pseudoramibacter alactolyticus ATCC 23263] Length = 262 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 86/192 (44%), Positives = 115/192 (59%), Gaps = 3/192 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 H +E R + ++GIDEVGRG LAGPVV AA+IL + GI+DSKKIS K+RE Sbjct: 66 HQAIERAARAQGYALISGIDEVGRGPLAGPVVAAAVILPETSAIAGIDDSKKISAKRRET 125 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L I A+ I I + ID NI +AT A+ +AV L P LID +P + Sbjct: 126 LNAAIRDEALAIGIGVVDPETIDAMNILEATKLAMTNAVAQLVPRPDLLLIDALKLPSQI 185 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P QA V+ GD+ I AASI+AKV RD LM+ + YP+YGF+ ++GY TA H + I+ Sbjct: 186 PVQA--VVHGDARCYCIGAASIVAKVYRDHLMQEYARTYPEYGFERNMGYGTAAHIEAIQ 243 Query: 190 EKGPSCIHRLTF 201 GP+ +HR +F Sbjct: 244 TCGPTPVHRRSF 255 >gi|260495645|ref|ZP_05815769.1| ribonuclease HII [Fusobacterium sp. 3_1_33] gi|260196828|gb|EEW94351.1| ribonuclease HII [Fusobacterium sp. 3_1_33] Length = 214 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 84/189 (44%), Positives = 117/189 (61%), Gaps = 8/189 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84 V G+DE GRG LAGPVV AA+IL + INDSKK++ KKRE+LY+ I + +++ Sbjct: 19 VIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSKKLTEKKREKLYDIIMKNFYVAVG 78 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPCQAFAVIKG 139 ++ + IDK NI A A+ A+++L+ I + L+DG ++ + ++KG Sbjct: 79 ISTVEEIDKMNILNADFLAMRRALKDLENIKKDKKEYIVLVDGNLKIKEYSGKQLPIVKG 138 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHR 198 D+ SLS+AAASIIAKVTRDRLM+ YPDY F+ H GY T H +VIK KG +HR Sbjct: 139 DAKSLSVAAASIIAKVTRDRLMKDLANTYPDYSFEKHKGYGTKAHIEVIKNKGAIEGVHR 198 Query: 199 LTF-RPLRN 206 F R + N Sbjct: 199 KVFLRKINN 207 >gi|238751436|ref|ZP_04612928.1| Ribonuclease HII [Yersinia rohdei ATCC 43380] gi|238710303|gb|EEQ02529.1| Ribonuclease HII [Yersinia rohdei ATCC 43380] Length = 183 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 82/180 (45%), Positives = 111/180 (61%), Gaps = 2/180 (1%) Query: 29 IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSAS 87 +DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A+ S+ A Sbjct: 1 MDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEIIDKALSWSLGRAE 60 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 + ID NI AT+ A+ AV L ++P LIDG P+ L + AV+KGDS I+ Sbjct: 61 PEEIDHLNILHATMLAMQRAVAGLHIVPDYVLIDGNRCPQ-LAMPSLAVVKGDSRVAEIS 119 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 AASI+AKVTRDR M + +P+YGF H GYPTA H + + G + HR +F P++ + Sbjct: 120 AASILAKVTRDREMTELDRHFPEYGFAQHKGYPTAVHLEKLSTFGATEHHRRSFGPVKRV 179 >gi|310641522|ref|YP_003946280.1| ribonuclease hii [Paenibacillus polymyxa SC2] gi|309246472|gb|ADO56039.1| Ribonuclease HII [Paenibacillus polymyxa SC2] Length = 229 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 124/206 (60%), Gaps = 8/206 (3%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 N++ + H+E + E++ +AGIDEVGRG L G VV AA+IL + G++DSKK+ Sbjct: 20 NAVKDMLHYEKKCW--EQSCERIAGIDEVGRGCLFGDVVAAAVILPVGELLEGVDDSKKL 77 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 + KKRE YE I AI + + + ID+ NI +A A+ AVE L V P L+D Sbjct: 78 TDKKREAYYELIMEKAIAVGVGHVDARMIDEINIKQAARLAMKKAVEALHVSPDYLLVDA 137 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA-HKKYPDYGFDSHVGYPT 181 + D+P ++IKGD+ S SIAAASIIAKVTRDRL + KYP+YG H GY T Sbjct: 138 EKV--DVPIPQLSIIKGDANSQSIAAASIIAKVTRDRLCKGEWDAKYPEYGIGIHKGYAT 195 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207 H++ I GP+ +HR +F L NL Sbjct: 196 KLHREQILALGPTEMHRRSF--LGNL 219 >gi|298370293|ref|ZP_06981609.1| ribonuclease HII [Neisseria sp. oral taxon 014 str. F0314] gi|298281753|gb|EFI23242.1| ribonuclease HII [Neisseria sp. oral taxon 014 str. F0314] Length = 196 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 84/184 (45%), Positives = 116/184 (63%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L I A+ SI Sbjct: 6 LAGMDEAGRGPLVGSVFAAAVILPERYDLP-GLTDSKKLSEKKRDTLAVSIKEQAVSWSI 64 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS + I + NI AT+ A+ AV+ L V+P LIDG +P+DL A AV+KGDS Sbjct: 65 ASASPEEIAELNILHATMLAMARAVQGLAVVPDKVLIDGNRVPKDLGVPAEAVVKGDSKI 124 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M ++YP YGFD H GY TA+H +++ G HR F P Sbjct: 125 IEISAASVLAKTARDAEMYALAERYPQYGFDKHKGYGTAQHLAALQKYGVLPEHRRDFAP 184 Query: 204 LRNL 207 ++ L Sbjct: 185 VKAL 188 >gi|167563174|ref|ZP_02356090.1| ribonuclease HII [Burkholderia oklahomensis EO147] gi|167570357|ref|ZP_02363231.1| ribonuclease HII [Burkholderia oklahomensis C6786] Length = 214 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 84/181 (46%), Positives = 120/181 (66%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 V G+DE GRG LAGPVV AA++LDP G++DSK +S KKRE L+++I + ++ ++ Sbjct: 28 VCGVDEAGRGPLAGPVVAAAVVLDPARPIEGLDDSKALSAKKRERLFDEIVAHSLAYCVA 87 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS + ID NI AT+ A+ AVE L + P A IDG P L ++ A++ GD++ Sbjct: 88 SASVEEIDTLNILHATMLAMKRAVEGLAMRPTLAKIDGNRCPT-LSIRSVAIVGGDALVP 146 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI+AASI+AKVTRDR++ H+ +P YGF+ H GY T +H ++E GP HR +F P+ Sbjct: 147 SISAASILAKVTRDRMLVDLHQLFPMYGFNVHAGYGTPRHLAALREHGPCEHHRRSFAPV 206 Query: 205 R 205 R Sbjct: 207 R 207 >gi|73662831|ref|YP_301612.1| ribonuclease HII [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|97189330|sp|Q49X31|RNH2_STAS1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|72495346|dbj|BAE18667.1| ribonuclease HII [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 256 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 81/183 (44%), Positives = 121/183 (66%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG LAGPVV A+IL+ N+ G+NDSKK+S K+R + K+ + + Sbjct: 74 ICGIDEVGRGPLAGPVVTCAVILNKNHHFTGLNDSKKLSAKQRHSIESKLLNDVYAYAYG 133 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID+ NI++AT A++ A+E L++ P L+D ++ D+P ++IKGD+ S+ Sbjct: 134 YASVEEIDEINIYEATKLAMHRAIEGLRIKPTHLLVDAMTLDIDIP--QTSLIKGDAKSV 191 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAAS++AK RD+ MR +KYP Y F+++VGY T +H IK+ G HR TF P+ Sbjct: 192 SIAAASVLAKEHRDQYMRDLGRKYPGYSFENNVGYGTQQHLDGIKKYGILNEHRKTFEPI 251 Query: 205 RNL 207 ++L Sbjct: 252 KSL 254 >gi|251797462|ref|YP_003012193.1| ribonuclease H [Paenibacillus sp. JDR-2] gi|247545088|gb|ACT02107.1| Ribonuclease H [Paenibacillus sp. JDR-2] Length = 203 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 86/189 (45%), Positives = 118/189 (62%), Gaps = 9/189 (4%) Query: 20 EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E+ +W +AG+DEVGRG L G VV AA+IL P+ + G+NDSKK+S KKR ELY+ Sbjct: 5 EERLWAEGYSAIAGVDEVGRGCLFGDVVAAAVILPPHLVLEGVNDSKKLSEKKRNELYDI 64 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I +I + + + ID+ NI +A A+ A+E+L+ P L+D + DLP Sbjct: 65 IVDQSIAWAAARVDAETIDRINIKQAARLAMKIALESLKTEPDYFLVDAEKV--DLPKPQ 122 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK-YPDYGFDSHVGYPTAKHQQVIKEKG 192 A+IKGD+ S SIAAASIIAKVTRDRL ++ YP+YG H GY T H++ + E G Sbjct: 123 LAIIKGDATSQSIAAASIIAKVTRDRLCEKEWEQLYPEYGIAIHKGYATKLHRERLLEYG 182 Query: 193 PSCIHRLTF 201 S +HR +F Sbjct: 183 ASPLHRKSF 191 >gi|238926779|ref|ZP_04658539.1| ribonuclease HII [Selenomonas flueggei ATCC 43531] gi|238885311|gb|EEQ48949.1| ribonuclease HII [Selenomonas flueggei ATCC 43531] Length = 259 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 92/197 (46%), Positives = 122/197 (61%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E E+ VAGIDE GRG LAGPV VAA+IL + +NDSKK+S K REEL Sbjct: 52 YSYERCAAERGNCIVAGIDEAGRGPLAGPVAVAAVILPQEYLLLRLNDSKKLSEKVREEL 111 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YE I S A+ + + ID+ NI +AT +Y AV L P+ LID ++P L Sbjct: 112 YETIVSDAVSYHVELIDAETIDRMNILEATRRGMYDAVAALLPTPQEVLIDAVALPR-LR 170 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +++KGD+ S SIAAASI+AKVTRDRLM K+YP YGF H GY T +H + I++ Sbjct: 171 MASQSIVKGDAKSASIAAASILAKVTRDRLMLTYDKEYPVYGFAQHKGYGTREHIEAIRK 230 Query: 191 KGPSCIHRLTFRPLRNL 207 G +HR TF P+R++ Sbjct: 231 YGICPLHRKTFEPIRSM 247 >gi|296536589|ref|ZP_06898669.1| ribonuclease H [Roseomonas cervicalis ATCC 49957] gi|296263085|gb|EFH09630.1| ribonuclease H [Roseomonas cervicalis ATCC 49957] Length = 205 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 84/192 (43%), Positives = 120/192 (62%), Gaps = 9/192 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 VAG+DE GRG LAGPV+ AA++ P+ + ++DSKK+S +KRE + + ++A Sbjct: 14 VAGVDEAGRGPLAGPVMAAAVMFHGAPPDTLAMLLDDSKKLSAEKREAAFAVLRAAARAG 73 Query: 83 I-----SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 + ++AS I + NI +AT A++ AV L +P L+DG + P LPC V+ Sbjct: 74 VLDYAIAAASAAEIGRLNILRATHLAMWRAVSRLPALPDLVLVDGNAAPR-LPCATRCVV 132 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGDS+SLSIAAASI+AKVTRDR M ++P YGF H GYPTA H+ +++ GP H Sbjct: 133 KGDSLSLSIAAASILAKVTRDRAMIRLDGRWPGYGFARHAGYPTAAHRAALEKLGPCPHH 192 Query: 198 RLTFRPLRNLSV 209 R F P+ L++ Sbjct: 193 RRGFAPVDQLAL 204 >gi|312862697|ref|ZP_07722937.1| ribonuclease HII [Streptococcus vestibularis F0396] gi|311101557|gb|EFQ59760.1| ribonuclease HII [Streptococcus vestibularis F0396] Length = 256 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 84/207 (40%), Positives = 125/207 (60%), Gaps = 7/207 (3%) Query: 6 IPERPHFEL----EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61 I E E+ E ++ + + +AG+DEVGRG LAGPVV AA+IL G+NDSK Sbjct: 48 IAEEERLEMMLSYEKVLYAQGVELIAGVDEVGRGPLAGPVVAAAVILPKFCKIKGLNDSK 107 Query: 62 KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 KI K E +Y+++ A+ + + + ID NI++AT A+ A+ENL P LI Sbjct: 108 KIPKSKHEAIYKQVMKEAVAVGVGIKDNHVIDDVNIYEATKLAMAEAIENLSPKPEHLLI 167 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 D ++ DLP ++IKGD+ SLSIAAASI+AKVTRD++M +++P Y F + GY Sbjct: 168 DAMTL--DLPIGQTSIIKGDANSLSIAAASIVAKVTRDKMMADYDQEFPGYAFAKNAGYG 225 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNL 207 T H + + G + IHR +F P++++ Sbjct: 226 TKDHLTGLDKFGVTPIHRRSFEPIKSI 252 >gi|302670910|ref|YP_003830870.1| ribonuclease HII RnhB [Butyrivibrio proteoclasticus B316] gi|302395383|gb|ADL34288.1| ribonuclease HII RnhB [Butyrivibrio proteoclasticus B316] Length = 253 Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 94/191 (49%), Positives = 128/191 (67%), Gaps = 2/191 (1%) Query: 13 ELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E++ RE + + GIDEVGRG LAGPV AA+IL ++ + +NDSKK+S KKREEL Sbjct: 58 EMKKYERENAGLGLLCGIDEVGRGPLAGPVYAAAVILPTDSEIYYLNDSKKLSEKKREEL 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I AI + I ++ + ID+ NI +AT +A+ AV +L V P LID IP+ Sbjct: 118 YDVIMDKAISVGIGYSTCERIDEINILQATYEAMTKAVNSLSVKPGGLLIDAVHIPQLEE 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + ++IKGD+ S SIAAASIIAKVTRDR+M+ K+YP+YGFDS+ GY +A H +K+ Sbjct: 178 YKQISIIKGDAKSASIAAASIIAKVTRDRIMKDYAKEYPEYGFDSNKGYGSADHIAALKK 237 Query: 191 KGPSCIHRLTF 201 GP IHR +F Sbjct: 238 YGPCPIHRRSF 248 >gi|240142860|ref|YP_002967373.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Methylobacterium extorquens AM1] gi|240012807|gb|ACS44032.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Methylobacterium extorquens AM1] Length = 222 Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 85/201 (42%), Positives = 120/201 (59%), Gaps = 8/201 (3%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN---DSKKISH 65 RP +E E + VAG+DE GRG LAG V AA+++ P+ G++ DSK ++ Sbjct: 4 RPTYERERAAGKV----VAGVDECGRGCLAGEVWAAAVVI-PDWAAAGVSAVADSKILAA 58 Query: 66 KKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KRE+L E + +S +I +AS + I++ NI +AT+ A+ AV L V P L+DG + Sbjct: 59 AKREQLCEMLRTSCHAAIGTASLEEIERLNILQATMLAMSRAVAALPVRPDHVLVDGNRV 118 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P+ LPC A AV+ GD+ +IAAASI+AKV RD M H +P YG+D + GY T +H Sbjct: 119 PKGLPCAATAVVGGDATVRAIAAASIVAKVGRDAAMASLHLAHPAYGWDRNAGYGTPEHL 178 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 I+ GPS HR TF +R Sbjct: 179 AAIRTHGPSPHHRRTFAGVRE 199 >gi|18310688|ref|NP_562622.1| ribonuclease HII [Clostridium perfringens str. 13] gi|39932438|sp|Q8XJQ0|RNH2_CLOPE RecName: Full=Ribonuclease HII; Short=RNase HII gi|18145369|dbj|BAB81412.1| ribonuclease HII [Clostridium perfringens str. 13] Length = 272 Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 95/221 (42%), Positives = 126/221 (57%), Gaps = 21/221 (9%) Query: 5 SIPERPHFELEAMVRE----KNMWP----------VAGIDEVGRGALAGPVVVAAIILDP 50 S+ R L +++E KNM+ VAG+DEVGRG LAGP+V AA+ILD Sbjct: 54 SLGNRLEKNLNNLIKEEERVKNMYLFDKSFGDYKYVAGVDEVGRGPLAGPIVSAAVILDS 113 Query: 51 ---NNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYH 106 ++I INDSKK+S KREEL E I A+ SIS + ID+ I + Sbjct: 114 SDLDDIILYINDSKKLSEHKREELSEIIKEKALSYSISMCDSKEIDEKGIGYCNNEVFIK 173 Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 A E L + P L DG I ++ + VIKGD+ S IA ASIIAKV RD +M+ +K Sbjct: 174 ACEGLSIKPDLVLSDGYLI-KNFNGENKHVIKGDTKSACIACASIIAKVYRDNIMKEYNK 232 Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 KYP Y F+ +VGY T H +KE GP+ IHR++F L+N+ Sbjct: 233 KYPQYDFEKNVGYGTKTHVDALKEVGPTEIHRMSF--LKNI 271 >gi|291542667|emb|CBL15777.1| RNase HII [Ruminococcus bromii L2-63] Length = 201 Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 81/182 (44%), Positives = 113/182 (62%), Gaps = 2/182 (1%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + + G+DE GRG LAGPV AA+IL N + G+NDSKK+S KKRE L++ I A+ Sbjct: 13 RGFLSICGVDEAGRGPLAGPVCAAAVILPENTVIEGVNDSKKLSEKKREALFDVIKEQAL 72 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 SI+ AS + I++ NI A + A+ AVE L+ A+IDG +P L + ++KG Sbjct: 73 AYSIAFASVEEIEEMNILNAAMLAMKRAVEGLEPRADYAMIDGNRMP-PLSIEGECIVKG 131 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D+ S+SIA ASI+AKV+RDRL+ K++P Y F H GY T H + I + GP HR Sbjct: 132 DAKSMSIACASILAKVSRDRLLYEYDKEFPQYLFAKHKGYGTKAHIEAILKYGPCKYHRP 191 Query: 200 TF 201 +F Sbjct: 192 SF 193 >gi|296268970|ref|YP_003651602.1| ribonuclease H [Thermobispora bispora DSM 43833] gi|296091757|gb|ADG87709.1| Ribonuclease H [Thermobispora bispora DSM 43833] Length = 241 Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 79/191 (41%), Positives = 115/191 (60%), Gaps = 4/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + K PVAG+DE GRGA AGP+VVA++IL G+ DSK + RE L Sbjct: 19 YGYERALARKGFAPVAGVDEAGRGACAGPLVVASVILGRRIA--GLADSKLLGEPVRERL 76 Query: 72 YEKITSSAIISISSA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++++ ++A ID+H +HK + + AV L + P L+DG +P LP Sbjct: 77 HDRVVAAAQAVSVVVIPPGEIDEHGLHKCNVAGVRRAVAGLGLEPGYILVDGFPVP-GLP 135 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + A+ KGD ++ +AAASI+AKVTRDRLMR H++YP+YGFD++ GY TA H++ + Sbjct: 136 APSLAMWKGDRVAACVAAASIVAKVTRDRLMRRLHERYPEYGFDTNKGYVTAAHRRALAR 195 Query: 191 KGPSCIHRLTF 201 GP HR +F Sbjct: 196 YGPCPEHRFSF 206 >gi|284040939|ref|YP_003390869.1| ribonuclease H [Spirosoma linguale DSM 74] gi|283820232|gb|ADB42070.1| Ribonuclease H [Spirosoma linguale DSM 74] Length = 191 Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 83/180 (46%), Positives = 118/180 (65%), Gaps = 3/180 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DEVGRG LAGPVV AA+IL + +NDSK++SH++RE L + I AI +++ Sbjct: 13 AGLDEVGRGCLAGPVVAAAVILPKDYTHPILNDSKQLSHRQRELLKQDIERDAIAWAVAE 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLPCQAFAVIKGDSISL 144 SH+ ID+ NI KA+ A++ AV+ L V P L+DG R +P + +IKGD+ L Sbjct: 73 VSHEDIDRINILKASFLAMHRAVDALTVKPEHLLVDGNRFVPYPMTPHT-CIIKGDAHYL 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAAS++AK RD LM ++P YG+ +VGYPT H+ I++ GP+ HR++FR L Sbjct: 132 SIAAASVLAKTYRDDLMAQLGLEFPAYGWAQNVGYPTPIHRAAIRQFGPTKYHRMSFRLL 191 >gi|310658877|ref|YP_003936598.1| ribonuclease hii (rnase hii) [Clostridium sticklandii DSM 519] gi|308825655|emb|CBH21693.1| Ribonuclease HII (RNase HII) [Clostridium sticklandii] Length = 256 Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 81/197 (41%), Positives = 120/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F +E + + + G+DE GRG LAGPVV A +ILD N + GI+DSKK+S K R+ + Sbjct: 61 FIIEETLFAEGYKKIGGVDEAGRGPLAGPVVSACVILDKNPMIDGIDDSKKVSEKNRDRI 120 Query: 72 YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ I +S II I + ID++NI AT A+ ++ P ++DG D+ Sbjct: 121 FDTIVNSDIIYGIGISDSNEIDEYNILNATFLAMKRSIAMASQRPDFIIVDGNQQITDIN 180 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +++GDS S+SIA ASI+AKVTRD++M+ + YP YGFD H GY T +H + I + Sbjct: 181 HPQRCIVQGDSKSISIACASILAKVTRDKIMKQYAEIYPQYGFDKHKGYGTKEHIEAINK 240 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHRL+F L+N+ Sbjct: 241 YGITPIHRLSF--LKNI 255 >gi|75907505|ref|YP_321801.1| ribonuclease HII [Anabaena variabilis ATCC 29413] gi|97182199|sp|Q3MDN0|RNH2_ANAVT RecName: Full=Ribonuclease HII; Short=RNase HII gi|75701230|gb|ABA20906.1| RNase HII [Anabaena variabilis ATCC 29413] Length = 225 Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 83/183 (45%), Positives = 118/183 (64%), Gaps = 5/183 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI- 80 VAG+DEVGRGAL GPVV A++IL ++ P I DSKK+SH +R +L ++I++ AI Sbjct: 37 VAGVDEVGRGALFGPVVAASVILPASSFPQLMTAEIKDSKKLSHSRRVQLAQQISTLAID 96 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I A+ ID+ NI +ATL A+ +V+ L++ P L+DG +DLP ++KGD Sbjct: 97 WRIGYATTAEIDRINILQATLLAMRRSVKKLKLQPILCLVDGNQPVQDLPILQQTIVKGD 156 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 SL+IAAASI+AKV RD L++ KYP Y S+ GY + KH +++ G S +HR + Sbjct: 157 ERSLNIAAASIMAKVWRDDLIQRLSTKYPMYDLKSNKGYGSKKHLLALEKHGASPLHRQS 216 Query: 201 FRP 203 FRP Sbjct: 217 FRP 219 >gi|49483407|ref|YP_040631.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MRSA252] gi|257425298|ref|ZP_05601723.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 55/2053] gi|257427958|ref|ZP_05604356.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 65-1322] gi|257430591|ref|ZP_05606973.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 68-397] gi|257433352|ref|ZP_05609710.1| ribonuclease HII [Staphylococcus aureus subsp. aureus E1410] gi|257436194|ref|ZP_05612241.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M876] gi|282903799|ref|ZP_06311687.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C160] gi|282905562|ref|ZP_06313417.1| ribonuclease HII [Staphylococcus aureus subsp. aureus Btn1260] gi|282908537|ref|ZP_06316367.1| ribonuclease HII [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910816|ref|ZP_06318619.1| ribonuclease HII [Staphylococcus aureus subsp. aureus WBG10049] gi|282914021|ref|ZP_06321808.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M899] gi|282918943|ref|ZP_06326678.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C427] gi|282924066|ref|ZP_06331742.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C101] gi|283957987|ref|ZP_06375438.1| ribonuclease HII [Staphylococcus aureus subsp. aureus A017934/97] gi|293501052|ref|ZP_06666903.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 58-424] gi|293510014|ref|ZP_06668722.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M809] gi|293526601|ref|ZP_06671286.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M1015] gi|295427731|ref|ZP_06820363.1| ribonuclease HII [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591311|ref|ZP_06949949.1| ribonuclease H [Staphylococcus aureus subsp. aureus MN8] gi|56749568|sp|Q6GHJ1|RNH2_STAAR RecName: Full=Ribonuclease HII; Short=RNase HII gi|49241536|emb|CAG40222.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus MRSA252] gi|257271755|gb|EEV03893.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 55/2053] gi|257274799|gb|EEV06286.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 65-1322] gi|257278719|gb|EEV09338.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 68-397] gi|257281445|gb|EEV11582.1| ribonuclease HII [Staphylococcus aureus subsp. aureus E1410] gi|257284476|gb|EEV14596.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M876] gi|282314038|gb|EFB44430.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C101] gi|282316753|gb|EFB47127.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C427] gi|282322089|gb|EFB52413.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M899] gi|282325421|gb|EFB55730.1| ribonuclease HII [Staphylococcus aureus subsp. aureus WBG10049] gi|282327599|gb|EFB57882.1| ribonuclease HII [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330854|gb|EFB60368.1| ribonuclease HII [Staphylococcus aureus subsp. aureus Btn1260] gi|282595417|gb|EFC00381.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C160] gi|283790136|gb|EFC28953.1| ribonuclease HII [Staphylococcus aureus subsp. aureus A017934/97] gi|290920673|gb|EFD97736.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M1015] gi|291096057|gb|EFE26318.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 58-424] gi|291466958|gb|EFF09476.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M809] gi|295128089|gb|EFG57723.1| ribonuclease HII [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576197|gb|EFH94913.1| ribonuclease H [Staphylococcus aureus subsp. aureus MN8] gi|312438378|gb|ADQ77449.1| ribonuclease HII [Staphylococcus aureus subsp. aureus TCH60] gi|315194133|gb|EFU24526.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus CGS00] Length = 255 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 120/201 (59%), Gaps = 4/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E + N + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENEILTENPNAI-ICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G HR +F P+++L Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254 >gi|302332850|gb|ADL23043.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus JKD6159] Length = 255 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E +++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAFAFGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G HR +F P+++L Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254 >gi|222100634|ref|YP_002535202.1| Ribonuclease [Thermotoga neapolitana DSM 4359] gi|221573024|gb|ACM23836.1| Ribonuclease [Thermotoga neapolitana DSM 4359] Length = 245 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 86/189 (45%), Positives = 112/189 (59%), Gaps = 5/189 (2%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 K VAGIDE GRG LAGPVV AA+IL+ + + DSK ++ K RE+L+++I A Sbjct: 10 KEYGVVAGIDEAGRGCLAGPVVAAAVILEYDIEE--VCDSKLLTSKTREKLFDEIMEKAA 67 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 + I A+ + ID NI AT A+ A+ENL V P +IDG+ + DL ++ GD Sbjct: 68 VGIGMATPEEIDLQNIFNATKMAMNRALENLPVKPSFVIIDGKGL--DLGVPGTCLVGGD 125 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S I AASIIAKV RDRLM H YP++ F H GY T H I+ G +HR++ Sbjct: 126 RKSKLIGAASIIAKVVRDRLMEKLHDLYPEFSFHKHKGYATKDHLNEIRLHGVLPVHRMS 185 Query: 201 FRP-LRNLS 208 FRP L NLS Sbjct: 186 FRPVLENLS 194 >gi|89256503|ref|YP_513865.1| ribonuclease HII [Francisella tularensis subsp. holarctica LVS] gi|115314935|ref|YP_763658.1| ribonuclease HII [Francisella tularensis subsp. holarctica OSU18] gi|156502614|ref|YP_001428679.1| ribonuclease HII [Francisella tularensis subsp. holarctica FTNF002-00] gi|254367835|ref|ZP_04983855.1| ribonuclease HII [Francisella tularensis subsp. holarctica 257] gi|290953972|ref|ZP_06558593.1| ribonuclease HII [Francisella tularensis subsp. holarctica URFT1] gi|295312649|ref|ZP_06803399.1| ribonuclease HII [Francisella tularensis subsp. holarctica URFT1] gi|122325051|sp|Q0BLL3|RNH2_FRATO RecName: Full=Ribonuclease HII; Short=RNase HII gi|122500629|sp|Q2A337|RNH2_FRATH RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225186|sp|A7NCM0|RNH2_FRATF RecName: Full=Ribonuclease HII; Short=RNase HII gi|89144334|emb|CAJ79621.1| Ribonuclease HII [Francisella tularensis subsp. holarctica LVS] gi|115129834|gb|ABI83021.1| ribonuclease H [Francisella tularensis subsp. holarctica OSU18] gi|134253645|gb|EBA52739.1| ribonuclease HII [Francisella tularensis subsp. holarctica 257] gi|156253217|gb|ABU61723.1| ribonuclease HII [Francisella tularensis subsp. holarctica FTNF002-00] Length = 187 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 81/183 (44%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84 + GIDE GRG L+GPVV A +ILD + I G+ DSKK++ KKR+ LY++I T + +I Sbjct: 3 ILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYTIV 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S Q ID+ NI +ATL AI+ NL+ L+DG +P + + A++KGDS + Sbjct: 63 EISPQQIDELNILQATLKAIHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSKII 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD + + YP YGF H GYPT +H + IK+ G IHR +++P+ Sbjct: 122 EISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYKPV 181 Query: 205 RNL 207 + L Sbjct: 182 QVL 184 >gi|194335200|ref|YP_002016994.1| Ribonuclease H [Pelodictyon phaeoclathratiforme BU-1] gi|238693361|sp|B4SAK8|RNH2_PELPB RecName: Full=Ribonuclease HII; Short=RNase HII gi|194307677|gb|ACF42377.1| Ribonuclease H [Pelodictyon phaeoclathratiforme BU-1] Length = 206 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 87/198 (43%), Positives = 113/198 (57%), Gaps = 14/198 (7%) Query: 24 WP-------VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-----INDSKKISHKKREEL 71 WP V GIDE GRG LAGPVV AA+I P G +NDSKK+S +RE L Sbjct: 7 WPLWQTTALVCGIDEAGRGPLAGPVVAAAVIFPRWFRPVGTILERVNDSKKLSAAERELL 66 Query: 72 YEKI-TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 I ++A +++ + ID+ NI +AT+ A+ AV L + P L+DG +LP Sbjct: 67 APAIRNAAAFWAVAEVDPETIDQINILQATMLAMNQAVAALPIQPELLLVDGNRFRTELP 126 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 V+KGDS SIAAAS++AK RD LM +YP YGF+ HVGYPT H + I++ Sbjct: 127 IPYETVVKGDSKVFSIAAASVLAKTHRDELMVAYASEYPQYGFERHVGYPTRAHVEAIRQ 186 Query: 191 KGPSCIHRLTFRPLRNLS 208 G IHR +FR LR L Sbjct: 187 HGRCPIHRQSFR-LRQLG 203 >gi|323441022|gb|EGA98729.1| ribonuclease HII [Staphylococcus aureus O11] gi|323442339|gb|EGA99969.1| ribonuclease HII [Staphylococcus aureus O46] Length = 255 Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E +++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAFAFGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G HR +F P+++L Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254 >gi|311105997|ref|YP_003978850.1| ribonuclease HII [Achromobacter xylosoxidans A8] gi|310760686|gb|ADP16135.1| ribonuclease HII [Achromobacter xylosoxidans A8] Length = 202 Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 89/205 (43%), Positives = 120/205 (58%), Gaps = 16/205 (7%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 PE+P AMV AG+DE GRG LAG V AA+IL+P G+ DSK + Sbjct: 10 PEQP-----AMV-------TAGVDEAGRGPLAGAVYAAAVILNPARPIAGLADSKVLKAA 57 Query: 67 KREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 RE L +I S I+SAS ID NI +AT+ A+ AV+ L +P+ AL+DG Sbjct: 58 TREALALEIQEFSLAWCIASASVAEIDSMNILRATMLAMQRAVQGLSTMPQLALVDGNQA 117 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR-LMRIAHKKYPDYGFDSHVGYPTAKH 184 P+ L C VIKGD++ +I+AASI+AK RD L+R+ H YP Y FD H GY TA H Sbjct: 118 PK-LGCTVQTVIKGDALVPAISAASILAKTARDADLLRL-HALYPQYAFDQHKGYGTALH 175 Query: 185 QQVIKEKGPSCIHRLTFRPLRNLSV 209 ++++E GP HR +F P++ S+ Sbjct: 176 LEMLREHGPCAEHRRSFAPIKAFSL 200 >gi|294781869|ref|ZP_06747201.1| ribonuclease HII [Fusobacterium sp. 1_1_41FAA] gi|294481680|gb|EFG29449.1| ribonuclease HII [Fusobacterium sp. 1_1_41FAA] Length = 217 Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 85/183 (46%), Positives = 116/183 (63%), Gaps = 7/183 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84 V G+DE GRG LAGPVV AA+IL + INDSKK++ KKRE+LY+ I ++ +++ Sbjct: 15 VIGVDEAGRGPLAGPVVAAAVILKQYSEELDEINDSKKLTEKKREKLYDIILNNFNVAVG 74 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPCQAFAVIKG 139 AS + IDK NI A A+ A+++L+ + L+DG ++ + F ++KG Sbjct: 75 IASVEEIDKLNILNADFLAMRRALKDLEKFYETKKDYIVLVDGNLKIKEYEGKQFPIVKG 134 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHR 198 D+ SLSIAAASIIAKVTRDR+M+ KYPDY F+ + GY T KH + IK KG IHR Sbjct: 135 DAKSLSIAAASIIAKVTRDRIMKDLGLKYPDYDFEKNKGYGTKKHVEAIKTKGVLKNIHR 194 Query: 199 LTF 201 F Sbjct: 195 KVF 197 >gi|55820934|ref|YP_139376.1| ribonuclease HII [Streptococcus thermophilus LMG 18311] gi|55822856|ref|YP_141297.1| ribonuclease HII [Streptococcus thermophilus CNRZ1066] gi|81559468|sp|Q5M021|RNH2_STRT1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|81560665|sp|Q5M4N6|RNH2_STRT2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|55736919|gb|AAV60561.1| ribonuclease HII [Streptococcus thermophilus LMG 18311] gi|55738841|gb|AAV62482.1| ribonuclease HII [Streptococcus thermophilus CNRZ1066] Length = 260 Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 81/183 (44%), Positives = 116/183 (63%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG LAGPVV AA+IL G+NDSKKI K E +Y ++ A+ + I Sbjct: 77 IAGVDEVGRGPLAGPVVAAAVILPKLCKIKGLNDSKKIPKSKHEAIYNQVMKEAVAVGIG 136 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + ID NI++AT A+ A+E L P LID ++ DLP + ++IKGD+ SL Sbjct: 137 IKDNYVIDDVNIYEATKLAMIEAIEKLNPQPEHLLIDAMNL--DLPIEQTSIIKGDANSL 194 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASI+AKVTRD++M +++P Y F + GY T +H I + G + IHR +F P+ Sbjct: 195 SIAAASIVAKVTRDKMMADYEQEFPGYAFAKNAGYGTKEHLSGIDKFGVTPIHRRSFEPI 254 Query: 205 RNL 207 +++ Sbjct: 255 KSI 257 >gi|325923964|ref|ZP_08185553.1| RNase HII [Xanthomonas gardneri ATCC 19865] gi|325545547|gb|EGD16812.1| RNase HII [Xanthomonas gardneri ATCC 19865] Length = 242 Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 80/182 (43%), Positives = 118/182 (64%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII-SI 83 +AG+DE GRG LAGPV VAA++ DP+ G++DSK+++ ++RE+ Y +I A+ S+ Sbjct: 33 IAGVDEAGRGPLAGPVAVAAVVFDPSKPRINGLDDSKQLTAERREQAYARIVERALAWSV 92 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD++ Sbjct: 93 VLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALD 152 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I AASI+AKVTRDRLM H ++P+Y FD H GY T H ++ GP HR +F P Sbjct: 153 RAIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYATPVHLAALQTHGPCPQHRRSFAP 212 Query: 204 LR 205 +R Sbjct: 213 VR 214 >gi|225848014|ref|YP_002728177.1| ribonuclease HII [Sulfurihydrogenibium azorense Az-Fu1] gi|225644327|gb|ACN99377.1| ribonuclease HII [Sulfurihydrogenibium azorense Az-Fu1] Length = 193 Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 79/190 (41%), Positives = 117/190 (61%), Gaps = 3/190 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 LE + + + GIDE GRG +AGP+V++A+I N PF DSKK+S K+R+ LY Sbjct: 4 LEKKIYKNGYKYIVGIDEAGRGPIAGPLVISAVIFKYNQKPFVYADSKKLSPKERDSLYN 63 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I +A+ SI ++ ID I A + IY A+E L + P A++D +I DL Sbjct: 64 EILENALDYSIVVVDNEKIDSLGISSALKEGIYKAIEKLYIKPDYAILDFINI--DLDFD 121 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 + ++ K D +S ++AAASI++K+TRDR+M K YP++ FD H GYPT +H Q IK G Sbjct: 122 SISIPKADEVSHTVAAASILSKITRDRIMEDYSKIYPNFSFDKHKGYPTKQHYQEIKMYG 181 Query: 193 PSCIHRLTFR 202 + IHR ++R Sbjct: 182 ITPIHRKSYR 191 >gi|225389108|ref|ZP_03758832.1| hypothetical protein CLOSTASPAR_02854 [Clostridium asparagiforme DSM 15981] gi|225044826|gb|EEG55072.1| hypothetical protein CLOSTASPAR_02854 [Clostridium asparagiforme DSM 15981] Length = 217 Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 89/205 (43%), Positives = 119/205 (58%), Gaps = 8/205 (3%) Query: 8 ERPHFELEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 E+ LE M +N + + GIDE GRG LAGPV A+IL + +NDSKK+ Sbjct: 11 EKELARLEQMREYENTYAACAMICGIDEAGRGPLAGPVAAGAVILPKDCTLLHLNDSKKL 70 Query: 64 SHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S K+REEL+ +I A+ + + ID+ NI +AT +A+ A+ L V P L D Sbjct: 71 SEKRREELFVQIKEQAVAWCVGIVGPERIDEINILQATYEAMRQAIAGLGVKPDILLNDA 130 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 IP + +IKGD+ S+SIAAASI+AKVTRD +M + +PDY F H GY TA Sbjct: 131 VEIP-GVDIMQVPIIKGDAKSVSIAAASILAKVTRDHMMAEYDQLFPDYSFAKHKGYGTA 189 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 H Q IKE GP IHR +F +RN+ Sbjct: 190 AHIQAIKELGPCPIHRRSF--IRNI 212 >gi|149196242|ref|ZP_01873297.1| ribonuclease HII [Lentisphaera araneosa HTCC2155] gi|149140503|gb|EDM28901.1| ribonuclease HII [Lentisphaera araneosa HTCC2155] Length = 209 Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 84/204 (41%), Positives = 122/204 (59%), Gaps = 4/204 (1%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKIS 64 +PE F E R + G+DEVGRG LAGPVV A I+ + P G++DSKK+S Sbjct: 1 MPEPDMFFFEEHYRLLGFQAIGGVDEVGRGPLAGPVVAACCIIREGVVLPEGVDDSKKLS 60 Query: 65 HKKREELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 KKR +Y+++ + ++ + ID+ NI +A+ A+ AV+ ++V P LIDG Sbjct: 61 RKKRRLIYDQLLEVEGVNYALGIVEAEEIDEINILQASHLAMRKAVKAMKVKPDYLLIDG 120 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 +P + +++KGDS S+SIAAASI+AK RD LM KKYP+YGF+ H+GY T Sbjct: 121 LPVP-GFEQDSRSIVKGDSRSVSIAAASILAKEFRDDLMIEYSKKYPEYGFEKHMGYGTK 179 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRN 206 H + +K GP +HR +F P+R Sbjct: 180 LHMEALKNCGPCPLHRRSFAPVRK 203 >gi|312278270|gb|ADQ62927.1| Ribonuclease HII [Streptococcus thermophilus ND03] Length = 255 Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 81/183 (44%), Positives = 116/183 (63%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG LAGPVV AA+IL G+NDSKKI K E +Y ++ A+ + I Sbjct: 72 IAGVDEVGRGPLAGPVVAAAVILPKLCKIKGLNDSKKIPKSKHEAIYNQVMKEAVAVGIG 131 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + ID NI++AT A+ A+E L P LID ++ DLP + ++IKGD+ SL Sbjct: 132 IKDNYVIDDVNIYEATKLAMIEAIEKLNPQPEHLLIDAMNL--DLPIEQTSIIKGDANSL 189 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASI+AKVTRD++M +++P Y F + GY T +H I + G + IHR +F P+ Sbjct: 190 SIAAASIVAKVTRDKMMADYEQEFPGYAFAKNAGYGTKEHLSGIDKFGVTPIHRRSFEPI 249 Query: 205 RNL 207 +++ Sbjct: 250 KSI 252 >gi|225077059|ref|ZP_03720258.1| hypothetical protein NEIFLAOT_02112 [Neisseria flavescens NRL30031/H210] gi|224951616|gb|EEG32825.1| hypothetical protein NEIFLAOT_02112 [Neisseria flavescens NRL30031/H210] Length = 230 Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 85/183 (46%), Positives = 111/183 (60%), Gaps = 3/183 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L + I A+ SI+ Sbjct: 40 AGVDEAGRGPLVGSVFAAAVILPEHFDLP-GLTDSKKLSEKKRDMLAQMIKEQAVAWSIA 98 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A I K NI AT+ A+ AVE L V P IDG +P+DL A AV+KGDS + Sbjct: 99 FADPDEILKLNILHATMAAMKRAVEGLSVAPDKVWIDGNRVPKDLNVPAEAVVKGDSKII 158 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AAS++AK RD M K+YP YGFD H GY TA+H +K+ G HR F P+ Sbjct: 159 EISAASVLAKTARDAEMYELAKRYPQYGFDRHKGYGTAQHLAALKQYGVLLEHRRDFAPV 218 Query: 205 RNL 207 + L Sbjct: 219 KTL 221 >gi|225568157|ref|ZP_03777182.1| hypothetical protein CLOHYLEM_04231 [Clostridium hylemonae DSM 15053] gi|225163110|gb|EEG75729.1| hypothetical protein CLOHYLEM_04231 [Clostridium hylemonae DSM 15053] Length = 219 Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 90/185 (48%), Positives = 115/185 (62%), Gaps = 3/185 (1%) Query: 19 REKNMWP-VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77 +E M+ + GIDEVGRG LAGPVV A+IL ++ +NDSKK+S KKRE LY++I Sbjct: 31 KEYGMYRYICGIDEVGRGPLAGPVVAGAVILPKDDPVLYLNDSKKLSEKKREMLYDEIME 90 Query: 78 SAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 A+ + I Q ID+ NI +AT +A+ A+ +L V P L D +IP + + Sbjct: 91 KAVATGIGIVGPQRIDEINILQATYEAMRMAIADLPVQPDILLNDAVTIP-GVEILQVPI 149 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD+ S+SIAAASIIAKVTRDRLM K P Y S+ GY T H +KE GPS I Sbjct: 150 IKGDAKSVSIAAASIIAKVTRDRLMVEYDKILPGYDLASNKGYGTKAHIAGLKEHGPSPI 209 Query: 197 HRLTF 201 HR TF Sbjct: 210 HRATF 214 >gi|116627722|ref|YP_820341.1| ribonuclease HII [Streptococcus thermophilus LMD-9] gi|122267681|sp|Q03KX7|RNH2_STRTD RecName: Full=Ribonuclease HII; Short=RNase HII gi|116100999|gb|ABJ66145.1| RNase HII [Streptococcus thermophilus LMD-9] Length = 255 Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 81/183 (44%), Positives = 116/183 (63%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG LAGPVV AA+IL G+NDSKKI K E +Y ++ A+ + I Sbjct: 72 IAGVDEVGRGPLAGPVVAAAVILPKLCKIKGLNDSKKIPKSKHEAIYNQVMKEAVAVGIG 131 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + ID NI++AT A+ A+E L P LID ++ DLP + ++IKGD+ SL Sbjct: 132 IKDNYVIDDVNIYEATKLAMIEAIEKLNPQPEHLLIDAMNL--DLPIEQTSIIKGDANSL 189 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASI+AKVTRD++M +++P Y F + GY T +H I + G + IHR +F P+ Sbjct: 190 SIAAASIVAKVTRDKMMADYEQEFPGYAFAKNAGYGTKEHLSGIDKFGVTPIHRRSFEPI 249 Query: 205 RNL 207 +++ Sbjct: 250 KSI 252 >gi|114321001|ref|YP_742684.1| RNase HII [Alkalilimnicola ehrlichii MLHE-1] gi|122311401|sp|Q0A7J3|RNH2_ALHEH RecName: Full=Ribonuclease HII; Short=RNase HII gi|114227395|gb|ABI57194.1| RNase HII [Alkalilimnicola ehrlichii MLHE-1] Length = 198 Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 84/182 (46%), Positives = 116/182 (63%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG LAG VV AA+ILDP+ G+ DSK++S +R EL +I + A+ +S+ Sbjct: 14 LAGVDEVGRGPLAGAVVAAAVILDPDRPIAGLRDSKRLSAARRSELDRRIRAQALAVSLG 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI +A++ A+ AV L P AL+DG P LPC A A++KGD Sbjct: 74 RAEVAEIDRLNILQASMLAMQRAVAGLDPAPVQALVDGNRAPA-LPCPAQAIVKGDDRVP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AK RD MR ++YP YGF+ H+GYPT +H Q ++ G HR +F P+ Sbjct: 133 AIAAASILAKQARDAEMRALAEQYPGYGFERHMGYPTTEHLQALRTLGACPAHRRSFAPV 192 Query: 205 RN 206 R Sbjct: 193 RR 194 >gi|85860168|ref|YP_462370.1| ribonuclease HII [Syntrophus aciditrophicus SB] gi|97189377|sp|Q2LVU5|RNH2_SYNAS RecName: Full=Ribonuclease HII; Short=RNase HII gi|85723259|gb|ABC78202.1| ribonuclease HII [Syntrophus aciditrophicus SB] Length = 212 Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 88/195 (45%), Positives = 120/195 (61%), Gaps = 8/195 (4%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 HFE EA E +AG+DE GRG LAGPVV AA+IL I DSKK+S KRE+ Sbjct: 6 HFEREAY--EDGYRVIAGVDEAGRGPLAGPVVAAAVILPHGYSHPEITDSKKLSAGKREK 63 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG--RSIPE 127 LYE I A+ I + ID+ NI +ATL A+ AV++L + P L+DG R Sbjct: 64 LYEVIKRDALAIGVGVVESPVIDQVNILRATLRAMAEAVDDLSIRPDFLLVDGLHRIF-- 121 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L ++KGD++S+SIA+ASIIAKV+RDR+M I H+++P Y F + GY T +H++ Sbjct: 122 -LNISQKTIVKGDTLSVSIASASIIAKVSRDRIMEIYHRQFPQYNFLKNKGYGTREHREA 180 Query: 188 IKEKGPSCIHRLTFR 202 I+ G IHR +F+ Sbjct: 181 IQNFGFCKIHRRSFK 195 >gi|208779943|ref|ZP_03247287.1| ribonuclease HII [Francisella novicida FTG] gi|208744398|gb|EDZ90698.1| ribonuclease HII [Francisella novicida FTG] Length = 187 Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 80/183 (43%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84 + GIDE GRG L+GPVV A +ILD + I G+ DSKK++ KKR+ LY++I T + +I Sbjct: 3 ILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYTIV 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S Q ID+ NI +ATL A++ NL+ L+DG +P + + A++KGDS + Sbjct: 63 EISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSKII 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD + + YP YGF H GYPT +H + IK+ G IHR +++P+ Sbjct: 122 EISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYKPV 181 Query: 205 RNL 207 + L Sbjct: 182 QML 184 >gi|42523584|ref|NP_968964.1| ribonuclease HII (RNase HII) [Bdellovibrio bacteriovorus HD100] gi|81617170|sp|Q6MLA0|RNH2_BDEBA RecName: Full=Ribonuclease HII; Short=RNase HII gi|39575790|emb|CAE79957.1| ribonuclease HII (RNase HII) [Bdellovibrio bacteriovorus HD100] Length = 221 Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 83/178 (46%), Positives = 109/178 (61%), Gaps = 1/178 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 P+ G+DEVGRG LAGPV AA+I + + + DSK +S K+REEL + I I+ I Sbjct: 37 PIIGVDEVGRGCLAGPVYAAAVIFKSDALNDLVTDSKLLSEKRREELADLILKEHIVGIG 96 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLPCQAFAVIKGDSIS 143 SAS + ID+ NI A+L A+ AVE L V L+DG + IP + ++KGD Sbjct: 97 SASVEEIDEINILNASLLAMKRAVEKLGVKSGHVLVDGNKKIPNLKGFEQSTIVKGDLRV 156 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I+AASI+AKVTRDRLM+ KYP YGF+ H GY T H+Q I + GP HR +F Sbjct: 157 APISAASIVAKVTRDRLMKDLGVKYPHYGFEIHKGYSTPVHKQSIVDHGPCIAHRRSF 214 >gi|323489566|ref|ZP_08094793.1| ribonuclease HII [Planococcus donghaensis MPA1U2] gi|323396697|gb|EGA89516.1| ribonuclease HII [Planococcus donghaensis MPA1U2] Length = 259 Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 86/192 (44%), Positives = 118/192 (61%), Gaps = 6/192 (3%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKIT 76 R++++ VAGIDE GRG LAGPVV AA+IL P + G++DSK++S KR+EL I Sbjct: 64 RKESVDLVAGIDEAGRGPLAGPVVTAAVIL-PEDCSSLIGLDDSKQLSKAKRDELAITIK 122 Query: 77 SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 AI ++ S + ID+ NI++AT ++ A L P L D + +LP + Sbjct: 123 KFAISYAVHVQSPEEIDRLNIYQATKSSMTEAARALTPAPDIVLADAMML--ELPMTCES 180 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 +IKGD+ SLSIAAASI+AK RD LM +YP YGF+ H GY T +H ++E GP Sbjct: 181 IIKGDAKSLSIAAASILAKTGRDALMTEYAVQYPQYGFEKHAGYGTKEHVAALQEYGPCE 240 Query: 196 IHRLTFRPLRNL 207 IHR TF P++ L Sbjct: 241 IHRKTFEPIKTL 252 >gi|253733518|ref|ZP_04867683.1| ribonuclease HII [Staphylococcus aureus subsp. aureus TCH130] gi|253728572|gb|EES97301.1| ribonuclease HII [Staphylococcus aureus subsp. aureus TCH130] Length = 255 Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E +++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAFAYGIATSEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G HR +F P+++L Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254 >gi|253731863|ref|ZP_04866028.1| ribonuclease HII [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724273|gb|EES93002.1| ribonuclease HII [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 255 Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E +++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKNYPEYGFEKNAGYGTKQHLL 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G HR +F P+++L Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254 >gi|254374688|ref|ZP_04990169.1| ribonuclease H [Francisella novicida GA99-3548] gi|151572407|gb|EDN38061.1| ribonuclease H [Francisella novicida GA99-3548] Length = 187 Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 80/183 (43%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84 + GIDE GRG L+GPVV A +ILD + I G+ DSKK++ KKR+ LY++I T + +I Sbjct: 3 ILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYTIV 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S Q ID+ NI +ATL A++ NL+ L+DG +P + + A++KGDS + Sbjct: 63 EISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWNYNSEAIVKGDSKII 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD + + YP YGF H GYPT +H + IK+ G IHR +++P+ Sbjct: 122 EISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYKPV 181 Query: 205 RNL 207 + L Sbjct: 182 QML 184 >gi|271963370|ref|YP_003337566.1| ribonuclease H [Streptosporangium roseum DSM 43021] gi|270506545|gb|ACZ84823.1| Ribonuclease H [Streptosporangium roseum DSM 43021] Length = 228 Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 76/191 (39%), Positives = 115/191 (60%), Gaps = 4/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + + + PVAG+DE GRGA AGP+VVAA++L I G++DSK ++ +RE L Sbjct: 19 YGYERALARRGLGPVAGVDEAGRGACAGPLVVAAVVLG-RRID-GLSDSKLLTAARRESL 76 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YE+IT++A +S+ ID +H++ ++ + AV L L DG +P LP Sbjct: 77 YERITATAGAVSVVVIEPAEIDARGLHRSNIEGMRRAVARLSCDLGYVLTDGFPVP-GLP 135 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + V KGD ++ +AAASI+AKVTRDR+M ++P+YGF H GY T H++ ++ Sbjct: 136 VPSLGVWKGDQVAACVAAASIVAKVTRDRMMTALGDRHPEYGFAVHKGYGTVGHRRALET 195 Query: 191 KGPSCIHRLTF 201 GP HR +F Sbjct: 196 YGPCPAHRFSF 206 >gi|238787221|ref|ZP_04631020.1| Ribonuclease HII [Yersinia frederiksenii ATCC 33641] gi|238724483|gb|EEQ16124.1| Ribonuclease HII [Yersinia frederiksenii ATCC 33641] Length = 183 Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 82/180 (45%), Positives = 110/180 (61%), Gaps = 2/180 (1%) Query: 29 IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSAS 87 +DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++IT A+ S+ A Sbjct: 1 MDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEITDKALSWSLGRAE 60 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 + ID NI AT+ A+ AV L ++P LIDG P+ L + AV+KGDS I+ Sbjct: 61 PEEIDHLNILHATMLAMQRAVAGLHIVPDYVLIDGNRCPK-LAMPSLAVVKGDSRVAEIS 119 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 AASI+AKVTRDR M +P+YGF H GYPT H + + G + HR +F P++ + Sbjct: 120 AASILAKVTRDREMTELDLHFPEYGFAQHKGYPTPVHLETLAAFGATEHHRRSFGPVKRV 179 >gi|331009297|gb|EGH89353.1| ribonuclease HII [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 217 Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 88/181 (48%), Positives = 115/181 (63%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+LY +I A+ I+ Sbjct: 14 VAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLYVEIQEKALCWFIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AVE L + P+ ALIDG P+ L + V+KGDS Sbjct: 74 RAEVEEIDQLNILHATMLAMKRAVEGLSITPKLALIDGNRCPQ-LSVPSAPVVKGDSRVA 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P+ Sbjct: 133 AIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPV 192 Query: 205 R 205 R Sbjct: 193 R 193 >gi|300173225|ref|YP_003772391.1| ribonuclease HII [Leuconostoc gasicomitatum LMG 18811] gi|299887604|emb|CBL91572.1| ribonuclease HII [Leuconostoc gasicomitatum LMG 18811] Length = 254 Score = 144 bits (363), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 87/196 (44%), Positives = 120/196 (61%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E ++ + +AGIDEVGRG LAGPV+ AA+IL + + DSK++S KKRE L Sbjct: 59 FSFERHYWDQGVTYIAGIDEVGRGPLAGPVIAAAVILPSDFHHIDVIDSKQLSAKKREML 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y I AI I + ID NI++A A+ AV++L P LID S+ D+P Sbjct: 119 YHIIIEQAISIGVGIVDAATIDDINIYQAAKLAMTKAVKDLAPEPEVLLIDAMSL--DIP 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD++S SI AASIIAKVTRDRLM YP YGF ++ GY T +H +K+ Sbjct: 177 ITQESLIKGDALSNSIGAASIIAKVTRDRLMTEYSVMYPGYGFANNAGYGTKEHLDGLKK 236 Query: 191 KGPSCIHRLTFRPLRN 206 +G + IHR +F+P+ + Sbjct: 237 RGITPIHRQSFQPVHD 252 >gi|225630956|ref|YP_002727747.1| ribonuclease HII [Wolbachia sp. wRi] gi|254808008|sp|C0R4W4|RNH2_WOLWR RecName: Full=Ribonuclease HII; Short=RNase HII gi|225592937|gb|ACN95956.1| ribonuclease HII [Wolbachia sp. wRi] Length = 198 Score = 144 bits (363), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 87/196 (44%), Positives = 122/196 (62%), Gaps = 6/196 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII-LDPNNIPFGINDSKKISHKKR 68 P F LE K +AG+DEVGRG LAGPV+ AA++ +D N I GINDSKK++ + R Sbjct: 4 PDFTLE----NKLSGVIAGVDEVGRGPLAGPVISAAVVFIDRNTIIDGINDSKKLTPQCR 59 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + LYEKI S A I AS + I+ +NI +AT ++ A+ +L + L+DG PE Sbjct: 60 QVLYEKIISVAKFGIGMASVEEINSYNILQATKLSMKRALIDLDLELDYVLVDGNQPPE- 118 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + Q +++ GD++S SIAAASI+AKVTRDRLM+ H K+P+Y + + GY T +H I Sbjct: 119 VKWQVKSIVNGDNLSTSIAAASIVAKVTRDRLMQELHNKHPEYNWYKNKGYGTKEHLNAI 178 Query: 189 KEKGPSCIHRLTFRPL 204 G + HR F P+ Sbjct: 179 GLYGITEHHRRNFAPI 194 >gi|210615856|ref|ZP_03290818.1| hypothetical protein CLONEX_03037 [Clostridium nexile DSM 1787] gi|210150059|gb|EEA81068.1| hypothetical protein CLONEX_03037 [Clostridium nexile DSM 1787] Length = 252 Score = 144 bits (363), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 85/177 (48%), Positives = 113/177 (63%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84 + GIDEVGRG LAGPVV A+IL + +NDSKK+S K+REELY++I AI + I Sbjct: 72 ICGIDEVGRGPLAGPVVAGAVILPKDCEILYLNDSKKLSEKRREELYDEIMEKAIATGIG 131 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S ID+ NI +AT +A+ A++ L+ P L D +IP + +IKGD+ S+ Sbjct: 132 IVSPARIDEINILQATYEAMRIAIQQLETEPDLLLNDAVTIP-GVTIDQVPIIKGDAKSV 190 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASIIAKVTRDRLM P YGF S+ GY +A+H +K G + IHR++F Sbjct: 191 SIAAASIIAKVTRDRLMVQYDDVLPGYGFASNKGYGSAEHITALKTLGATPIHRMSF 247 >gi|15827847|ref|NP_302110.1| ribonuclease HII [Mycobacterium leprae TN] gi|221230324|ref|YP_002503740.1| ribonuclease HII [Mycobacterium leprae Br4923] gi|7227915|sp|O33022|RNH2_MYCLE RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807982|sp|B8ZRW3|RNH2_MYCLB RecName: Full=Ribonuclease HII; Short=RNase HII gi|2251163|emb|CAB10634.1| ribonuclease HII [Mycobacterium leprae] gi|13093399|emb|CAC30562.1| ribonuclease HII [Mycobacterium leprae] gi|219933431|emb|CAR71706.1| ribonuclease HII [Mycobacterium leprae Br4923] Length = 240 Score = 144 bits (363), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 81/203 (39%), Positives = 115/203 (56%), Gaps = 8/203 (3%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 R + LE ++ + PVAG+DEVGRGA AGP+VVAA +L P + ++DSKK+S K R Sbjct: 18 RGMWTLEYELQRSGLGPVAGVDEVGRGACAGPLVVAACVLGPGRLEESLDDSKKLSAKGR 77 Query: 69 EELYEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 E L+ I A ++ I S +D+H + A ++ + AV L V P L DG Sbjct: 78 EMLFPLICRYALAYHVVFIPSVE---VDRHGVQVANIEGMRRAVAGLSVRPGYVLSDGFR 134 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P L + V+ GD++ IAAAS++AKV+RDRLM YP YGF +H GY T H Sbjct: 135 VP-GLSVPSLPVVGGDAVVACIAAASVLAKVSRDRLMVAMDADYPGYGFAAHKGYCTRAH 193 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 + + GP HR +F +R + Sbjct: 194 SLALTQLGPCPEHRYSFINVRRI 216 >gi|242242528|ref|ZP_04796973.1| ribonuclease HII [Staphylococcus epidermidis W23144] gi|242233955|gb|EES36267.1| ribonuclease HII [Staphylococcus epidermidis W23144] Length = 260 Score = 144 bits (363), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 80/183 (43%), Positives = 116/183 (63%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG LAGPVV A+IL+ N+ G++DSKK+S K R L + + + + Sbjct: 78 ICGIDEVGRGPLAGPVVACAVILEKNHHYIGLDDSKKVSPKNRARLNQNLKENVYQYAYG 137 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID+ NI++AT A+ A+ +L V P LID ++ D+P ++IKGD+ S+ Sbjct: 138 IASSVEIDELNIYRATQLAMLRAINHLDVTPTHLLIDAMTLDIDIP--QTSIIKGDAKSV 195 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASI+AK RD+ MR K++PDYGFD + GY T +H + I G HR +F P+ Sbjct: 196 SIAAASIMAKEYRDQYMRQLSKQFPDYGFDKNAGYGTKQHLEAIDRVGFINEHRQSFEPI 255 Query: 205 RNL 207 +++ Sbjct: 256 KSM 258 >gi|282916494|ref|ZP_06324256.1| ribonuclease HII [Staphylococcus aureus subsp. aureus D139] gi|283770307|ref|ZP_06343199.1| ribonuclease HII [Staphylococcus aureus subsp. aureus H19] gi|282319934|gb|EFB50282.1| ribonuclease HII [Staphylococcus aureus subsp. aureus D139] gi|283460454|gb|EFC07544.1| ribonuclease HII [Staphylococcus aureus subsp. aureus H19] Length = 255 Score = 144 bits (363), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E +++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G HR +F P+++L Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254 >gi|126698859|ref|YP_001087756.1| ribonuclease HII [Clostridium difficile 630] gi|254974807|ref|ZP_05271279.1| ribonuclease HII [Clostridium difficile QCD-66c26] gi|255092195|ref|ZP_05321673.1| ribonuclease HII [Clostridium difficile CIP 107932] gi|255100280|ref|ZP_05329257.1| ribonuclease HII [Clostridium difficile QCD-63q42] gi|255306219|ref|ZP_05350391.1| ribonuclease HII [Clostridium difficile ATCC 43255] gi|255313934|ref|ZP_05355517.1| ribonuclease HII [Clostridium difficile QCD-76w55] gi|255516614|ref|ZP_05384290.1| ribonuclease HII [Clostridium difficile QCD-97b34] gi|255649714|ref|ZP_05396616.1| ribonuclease HII [Clostridium difficile QCD-37x79] gi|260682869|ref|YP_003214154.1| ribonuclease HII [Clostridium difficile CD196] gi|260686467|ref|YP_003217600.1| ribonuclease HII [Clostridium difficile R20291] gi|306519826|ref|ZP_07406173.1| ribonuclease HII [Clostridium difficile QCD-32g58] gi|123363581|sp|Q18BC9|RNH2_CLOD6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|115250296|emb|CAJ68118.1| Ribonuclease HII (RNase HII) [Clostridium difficile] gi|260209032|emb|CBA62137.1| ribonuclease HII [Clostridium difficile CD196] gi|260212483|emb|CBE03398.1| ribonuclease HII [Clostridium difficile R20291] Length = 255 Score = 144 bits (363), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 84/197 (42%), Positives = 120/197 (60%), Gaps = 6/197 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE E +K + GIDE GRG LAGPVV + ++ + G+NDSKK+S KR+EL Sbjct: 63 FENEGY--DKGYLYIGGIDEAGRGPLAGPVVASVVVFKKDTKIEGVNDSKKLSEAKRDEL 120 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +E I A+ I +++ ID+ NI AT A+ A+ L+ P L+D +IP + Sbjct: 121 FEVIKEEALDYGIGIVNNEEIDEFNILNATYMAMKKAINCLKKAPDYLLVDAATIP-GID 179 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++KGDS S+SIAAASI+AKVTRD +M + YP+YGF SH GY T +H + I++ Sbjct: 180 ISQNPIVKGDSKSISIAAASILAKVTRDSIMYQYDRVYPEYGFKSHKGYGTKEHYEAIEK 239 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F L+N+ Sbjct: 240 YGITPIHRKSF--LKNI 254 >gi|83647902|ref|YP_436337.1| ribonuclease HII [Hahella chejuensis KCTC 2396] gi|97182857|sp|Q2SBR2|RNH2_HAHCH RecName: Full=Ribonuclease HII; Short=RNase HII gi|83635945|gb|ABC31912.1| Ribonuclease HII [Hahella chejuensis KCTC 2396] Length = 204 Score = 144 bits (363), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 88/184 (47%), Positives = 123/184 (66%), Gaps = 4/184 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG LAGPVV AA+IL+P G+NDSKK+SH++R L ++I A+ + Sbjct: 19 VAGVDEVGRGPLAGPVVAAAVILNPEKPIEGLNDSKKLSHRQRVALSQEIREKALAWATG 78 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 A+ + ID+ NI +A+L A+ AV LQV P ALIDG IP+ D+P +A ++KGDS Sbjct: 79 WATVEEIDQINILQASLLAMQRAVAGLQVAPDLALIDGNKIPKLDMPAEA--IVKGDSKV 136 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV RD + +P YG H GYPTA+H ++E G + IHR +++P Sbjct: 137 AAIAAASILAKVERDEELDRLDVIFPGYGLAGHKGYPTAQHLSALRELGVTDIHRRSYKP 196 Query: 204 LRNL 207 ++ L Sbjct: 197 VQQL 200 >gi|241668184|ref|ZP_04755762.1| ribonuclease HII [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876719|ref|ZP_05249429.1| ribonuclease HII [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842740|gb|EET21154.1| ribonuclease HII [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 185 Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 80/183 (43%), Positives = 115/183 (62%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 + GIDE GRG L+GPVV A +ILDP G++DSKK++ KKR+ LYE IT+ A +I Sbjct: 3 ILGIDEAGRGPLSGPVVAAGVILDPEKTIDGLSDSKKLTEKKRQSLYEVITAHAKAYTIV 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S Q ID+ NI +ATL A+ +NL+ L+DG +P + + A++KGDS Sbjct: 63 EVSPQQIDQLNILQATLKAMNQVADNLKGQFDKVLVDGNKLP-NWDYNSEAIVKGDSKVQ 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD + + +P YGF H GYPT +H + I++ G IHR +++P+ Sbjct: 122 EISAASILAKVHRDNICLEHDRLFPQYGFAKHKGYPTKEHLENIRKYGVLNIHRKSYKPI 181 Query: 205 RNL 207 + L Sbjct: 182 QLL 184 >gi|332678593|gb|AEE87722.1| Ribonuclease HII [Francisella cf. novicida Fx1] Length = 187 Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 80/183 (43%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84 + GIDE GRG L+GPVV A +ILD + I G+ DSKK++ KKR+ LY++I T + +I Sbjct: 3 ILGIDEAGRGPLSGPVVAAGVILDRDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYTIV 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S Q ID+ NI +ATL A++ NL+ L+DG +P + + A++KGDS + Sbjct: 63 EISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSKII 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD + + YP YGF H GYPT +H + IK+ G IHR +++P+ Sbjct: 122 EISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYKPV 181 Query: 205 RNL 207 + L Sbjct: 182 QML 184 >gi|223933031|ref|ZP_03625025.1| Ribonuclease H [Streptococcus suis 89/1591] gi|302023800|ref|ZP_07249011.1| ribonuclease HII [Streptococcus suis 05HAS68] gi|330832827|ref|YP_004401652.1| ribonuclease HII [Streptococcus suis ST3] gi|223898348|gb|EEF64715.1| Ribonuclease H [Streptococcus suis 89/1591] gi|329307050|gb|AEB81466.1| ribonuclease HII [Streptococcus suis ST3] Length = 259 Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 87/201 (43%), Positives = 123/201 (61%), Gaps = 9/201 (4%) Query: 14 LEAMV-REKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LEAM+ EKN++ +AGIDEVGRG LAGPVV AA+IL +NDSKKI K Sbjct: 54 LEAMLFYEKNLYENGVEFIAGIDEVGRGPLAGPVVAAAVILPKGCKIRYLNDSKKIPKSK 113 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 E +Y+++ A+ + + ID+ NI++AT A+ A L P LID + Sbjct: 114 HEAIYQEVMERAVAVGVGIKDAAVIDQVNIYEATKLAMLEAFGKLSQKPDHLLIDAMKL- 172 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D P ++IKGD+ SLSIAAASI+AKVTRD++M K++ YGF + GY TA+H + Sbjct: 173 -DTPIPQTSIIKGDANSLSIAAASIVAKVTRDKMMADYDKEFSGYGFAKNAGYGTAEHLE 231 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 + + G + IHR TF P++++ Sbjct: 232 GLNKLGITPIHRKTFEPIKSM 252 >gi|148557468|ref|YP_001265050.1| ribonuclease H [Sphingomonas wittichii RW1] gi|189043662|sp|A5VF46|RNH2_SPHWW RecName: Full=Ribonuclease HII; Short=RNase HII gi|148502658|gb|ABQ70912.1| Ribonuclease H [Sphingomonas wittichii RW1] Length = 202 Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 117/201 (58%), Gaps = 7/201 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F+LE + P+AG+DE GRG LAGPVV AA+ILD +P GI+DSKK+ + R Sbjct: 4 PSFDLEI----AHPLPLAGVDEAGRGPLAGPVVAAAVILDRGRVPAGIDDSKKLGAEARA 59 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-D 128 +L KI A + + A+ + ID+ NI A++ A+ AV L V P L+DG P Sbjct: 60 DLCGKIREVAHVGVGIATVEEIDEINILWASMLAMERAVAALGVEPAMVLVDGNRCPRWT 119 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 P Q VI GD++ LSIAAASI+AK RDR+M +P YG+ + GY T H + Sbjct: 120 RPSQ--WVIGGDALCLSIAAASIVAKEERDRMMADYDVHHPGYGWAKNKGYGTPAHLDAL 177 Query: 189 KEKGPSCIHRLTFRPLRNLSV 209 GPS +HR +F P+ S+ Sbjct: 178 ARLGPSPLHRRSFAPVAQFSL 198 >gi|294012729|ref|YP_003546189.1| ribonuclease HII [Sphingobium japonicum UT26S] gi|292676059|dbj|BAI97577.1| ribonuclease HII [Sphingobium japonicum UT26S] Length = 199 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 81/185 (43%), Positives = 117/185 (63%), Gaps = 2/185 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DE GRG LAGPVV AA+IL + P G+NDSK++S +R L +I + A+ + Sbjct: 15 VAGVDEAGRGPLAGPVVAAAVILRQEDCPEGLNDSKQLSAARRAVLEGEIKARALCWGLG 74 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID NI AT+ A+ AVE L L+DG P+ + A+++GD+ L Sbjct: 75 VASVEEIDSINILWATMLAMTRAVEALAHDCAHVLVDGNRCPQ-WRWASTAIVEGDAKCL 133 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASI+AK RDR+M A +P YG++S+ GY +A+H ++E GP+ +HR +F P+ Sbjct: 134 SIAAASILAKEARDRMMVEAAATHPHYGWESNKGYGSARHLAALREHGPTPLHRRSFAPV 193 Query: 205 RNLSV 209 LS+ Sbjct: 194 AQLSL 198 >gi|291563277|emb|CBL42093.1| Ribonuclease HII [butyrate-producing bacterium SS3/4] Length = 214 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 82/177 (46%), Positives = 109/177 (61%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 + GIDE GRG LAGPV A IL + +NDSKK+S +REEL+ +I AI S+ Sbjct: 34 ICGIDEAGRGPLAGPVAAGAAILPKDCRILYLNDSKKLSESRREELFLEIKEKAIAWSVG 93 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + ID+ NI +AT +A+ A+ L +P+ L D +IP + +IKGD+ S+ Sbjct: 94 IVGPERIDEINILQATYEAMRQAISKLDPVPQVLLNDAVTIP-GVAIPQVPIIKGDAKSV 152 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASI+AKVTRD +M K+YP+YGF H GY T H +KE GP+ IHR TF Sbjct: 153 SIAAASILAKVTRDHMMEEYDKEYPEYGFAKHKGYGTPAHITALKEFGPTPIHRRTF 209 >gi|304440378|ref|ZP_07400267.1| ribonuclease HII [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371130|gb|EFM24747.1| ribonuclease HII [Peptoniphilus duerdenii ATCC BAA-1640] Length = 203 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 90/204 (44%), Positives = 121/204 (59%), Gaps = 12/204 (5%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E+E +K + V GIDEVGRG L G VV AA+I+ IP G+NDSKK++ +R EL Sbjct: 2 IEIEKNYYDKGLDLVCGIDEVGRGCLFGDVVAAAVIMPKTRIP-GVNDSKKLTELRRAEL 60 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL------QVIPRSALIDGRS 124 Y+KI SS + I IDK NI AT A+ AV+NL +V P LID Sbjct: 61 YDKILSSCVAYGIGIMDSVTIDKINIKMATHLAMLLAVQNLRAKDGSKVDPNVLLIDAEH 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + D+P ++ ++KGD SIA ASI+AKV RDRL K+YP Y + H GY T KH Sbjct: 121 LETDIPQES--IVKGDEKVYSIACASIVAKVYRDRLCEKWGKEYPGYEIEKHKGYGTKKH 178 Query: 185 QQVIKEKGPSCIHRLTFRPLRNLS 208 ++++ EKGP+ HR +F L+N+ Sbjct: 179 REILLEKGPTPHHRKSF--LKNME 200 >gi|118497878|ref|YP_898928.1| ribonuclease HII [Francisella tularensis subsp. novicida U112] gi|194323851|ref|ZP_03057627.1| ribonuclease HII [Francisella tularensis subsp. novicida FTE] gi|166225187|sp|A0Q7F9|RNH2_FRATN RecName: Full=Ribonuclease HII; Short=RNase HII gi|118423784|gb|ABK90174.1| ribonuclease HII [Francisella novicida U112] gi|194322215|gb|EDX19697.1| ribonuclease HII [Francisella tularensis subsp. novicida FTE] Length = 185 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 80/183 (43%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84 + GIDE GRG L+GPVV A +ILD + I G+ DSKK++ KKR+ LY++I T + +I Sbjct: 3 ILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYTIV 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S Q ID+ NI +ATL A++ NL+ L+DG +P + + A++KGDS + Sbjct: 63 EISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSKII 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD + + YP YGF H GYPT +H + IK+ G IHR +++P+ Sbjct: 122 EISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYKPI 181 Query: 205 RNL 207 + L Sbjct: 182 QLL 184 >gi|56708338|ref|YP_170234.1| ribonuclease HII [Francisella tularensis subsp. tularensis SCHU S4] gi|110670809|ref|YP_667366.1| ribonuclease HII [Francisella tularensis subsp. tularensis FSC198] gi|134301623|ref|YP_001121591.1| ribonuclease HII [Francisella tularensis subsp. tularensis WY96-3418] gi|224457462|ref|ZP_03665935.1| ribonuclease HII [Francisella tularensis subsp. tularensis MA00-2987] gi|254369606|ref|ZP_04985617.1| ribonuclease H [Francisella tularensis subsp. holarctica FSC022] gi|254370960|ref|ZP_04986964.1| ribonuclease H [Francisella tularensis subsp. tularensis FSC033] gi|254875160|ref|ZP_05247870.1| ribonuclease HII [Francisella tularensis subsp. tularensis MA00-2987] gi|81597296|sp|Q5NFF8|RNH2_FRATT RecName: Full=Ribonuclease HII; Short=RNase HII gi|123169324|sp|Q14GW0|RNH2_FRAT1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225188|sp|A4IX19|RNH2_FRATW RecName: Full=Ribonuclease HII; Short=RNase HII gi|56604830|emb|CAG45911.1| Ribonuclease HII [Francisella tularensis subsp. tularensis SCHU S4] gi|110321142|emb|CAL09294.1| Ribonuclease HII [Francisella tularensis subsp. tularensis FSC198] gi|134049400|gb|ABO46471.1| ribonuclease HII [Francisella tularensis subsp. tularensis WY96-3418] gi|151569202|gb|EDN34856.1| ribonuclease H [Francisella tularensis subsp. tularensis FSC033] gi|157122560|gb|EDO66695.1| ribonuclease H [Francisella tularensis subsp. holarctica FSC022] gi|254841159|gb|EET19595.1| ribonuclease HII [Francisella tularensis subsp. tularensis MA00-2987] gi|282159575|gb|ADA78966.1| ribonuclease HII [Francisella tularensis subsp. tularensis NE061598] Length = 187 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 80/183 (43%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84 + GIDE GRG L+GPVV A +ILD + I G+ DSKK++ KKR+ LY++I T + +I Sbjct: 3 ILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYTIV 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S Q ID+ NI +ATL A++ NL+ L+DG +P + + A++KGDS + Sbjct: 63 EISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSKII 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD + + YP YGF H GYPT +H + IK+ G IHR +++P+ Sbjct: 122 EISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYKPV 181 Query: 205 RNL 207 + L Sbjct: 182 QVL 184 >gi|332284293|ref|YP_004416204.1| ribonuclease HII [Pusillimonas sp. T7-7] gi|330428246|gb|AEC19580.1| ribonuclease HII [Pusillimonas sp. T7-7] Length = 220 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/183 (47%), Positives = 114/183 (62%), Gaps = 1/183 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAGIDE GRG LAGPV AA+ILDP G++DSKK+S +RE L + A+ I+ Sbjct: 21 VAGIDEAGRGPLAGPVFAAAVILDPARPIKGLDDSKKLSPARREGLALAVREYALAWYIA 80 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SA+ + ID NI +AT+ A+ A E L + ALIDG +P+ LPC A A+I GD+ Sbjct: 81 SATVEEIDTLNILQATMLAMRRACEGLSLPLAQALIDGNRVPKGLPCAAQAIIGGDASVA 140 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AK RD + H+ YPDY FD H GY TA H ++ GP HR TF P+ Sbjct: 141 AISAASILAKTARDADCLLLHQAYPDYCFDQHKGYGTALHLARLQAYGPCPAHRRTFAPV 200 Query: 205 RNL 207 + L Sbjct: 201 KRL 203 >gi|332981643|ref|YP_004463084.1| Ribonuclease H [Mahella australiensis 50-1 BON] gi|332699321|gb|AEE96262.1| Ribonuclease H [Mahella australiensis 50-1 BON] Length = 191 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 82/177 (46%), Positives = 113/177 (63%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG LAGPV+ AA+IL G+ DSKK++ K+R+ L++ I A+ ++I+ Sbjct: 6 VAGVDEVGRGPLAGPVMAAAVILPAGLHIDGLRDSKKLTPKQRQYLHDIILDKALAVAIA 65 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S H+ ID+ NI A L+ + AV +L + P ++DGR D+ AVI GD + Sbjct: 66 SVDHERIDEINIRMAALEVMKQAVLSLSIQPDRVMVDGRD-TLDITIPQQAVIGGDDLVA 124 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I+AAS++AKVTRDRLM H KYP Y F + GY T KH + I+E G IHR+TF Sbjct: 125 CISAASVVAKVTRDRLMVQYHDKYPQYDFIHNKGYGTQKHIEAIREYGICPIHRITF 181 >gi|261866967|ref|YP_003254889.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412299|gb|ACX81670.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D11S-1] Length = 199 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 81/183 (44%), Positives = 114/183 (62%), Gaps = 1/183 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSK +S KKR L E+I A+ ++ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPKQPIEGLADSKTLSEKKRLLLAEEIKQKALAWALG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI A++ A+ A+++L++ P L+DG IP +L A AV+KGD + Sbjct: 73 RAEPHEIDELNILHASMLAMERAIKHLKIRPHFVLVDGNRIPPNLMIPAQAVVKGDVLVP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M + KKYP Y F H GYPT H + ++E G +R +F P+ Sbjct: 133 EISAASILAKVARDQEMIVLDKKYPHYAFAKHKGYPTKLHLEKLREFGVLPEYRRSFAPV 192 Query: 205 RNL 207 + L Sbjct: 193 KKL 195 >gi|20807898|ref|NP_623069.1| ribonuclease HII [Thermoanaerobacter tengcongensis MB4] gi|39932431|sp|Q8R9X9|RNH2_THETN RecName: Full=Ribonuclease HII; Short=RNase HII gi|20516465|gb|AAM24673.1| Ribonuclease HII [Thermoanaerobacter tengcongensis MB4] Length = 241 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 85/188 (45%), Positives = 114/188 (60%), Gaps = 2/188 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + E+ + +AG+DE GRG L GPVV A +IL INDSKK+ +KRE+L E Sbjct: 48 EKKLYEEGLNFIAGVDEAGRGPLVGPVVAACVILPKEIFIPEINDSKKLPEEKREKLAEV 107 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI I + ID+ NI ATL A+ A+ ++ L+D SIP D+P + Sbjct: 108 IKKEAISYGIGIVDCREIDEINILNATLKAMKKAIFEVKEKIEYLLVDAISIP-DMPIKQ 166 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++KGDS S+SIAAASI+AKV RDR+MR HK YP Y F + GY T +H + +K+ GP Sbjct: 167 LPIVKGDSKSISIAAASILAKVERDRIMREYHKLYPQYNFAKNKGYGTKEHIEALKKYGP 226 Query: 194 SCIHRLTF 201 IHR T+ Sbjct: 227 CPIHRRTY 234 >gi|254373232|ref|ZP_04988721.1| ribonuclease HII [Francisella tularensis subsp. novicida GA99-3549] gi|151570959|gb|EDN36613.1| ribonuclease HII [Francisella novicida GA99-3549] Length = 185 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 80/183 (43%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84 + GIDE GRG L+GPVV A +ILD + I G+ DSKK++ KKR+ LY++I T + +I Sbjct: 3 ILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYTIV 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S Q ID+ NI +ATL A++ NL+ L+DG +P + + A++KGDS + Sbjct: 63 EISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWNYNSEAIVKGDSKII 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD + + YP YGF H GYPT +H + IK+ G IHR +++P+ Sbjct: 122 EISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYKPI 181 Query: 205 RNL 207 + L Sbjct: 182 QLL 184 >gi|30249669|ref|NP_841739.1| ribonuclease HII and HIII [Nitrosomonas europaea ATCC 19718] gi|39932358|sp|Q82U06|RNH2_NITEU RecName: Full=Ribonuclease HII; Short=RNase HII gi|30180706|emb|CAD85618.1| Ribonuclease HII and HIII [Nitrosomonas europaea ATCC 19718] Length = 217 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/184 (45%), Positives = 115/184 (62%), Gaps = 3/184 (1%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSA 86 G+DE GRG LAGPV A ++LDP ++ G+ DSK++S KKR L ++I A +I+SA Sbjct: 21 GVDEAGRGPLAGPVYAACVVLDPADVIEGLADSKQLSEKKRISLADQIKQRARAWAIASA 80 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRS-ALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI +A+L A+ AV +L+ I + L+DG P L C+ VI+GDS+ Sbjct: 81 SVEEIDRLNILQASLLAMQRAVVSLRPISNALVLVDGNHAPR-LDCEVQTVIRGDSLVAE 139 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AK RD M H+ YP YGFD H GYPT H + I+ G + IHR +F P Sbjct: 140 ISAASILAKTARDIEMLRLHEAYPVYGFDRHKGYPTKAHLEAIRLHGITDIHRRSFAPCV 199 Query: 206 NLSV 209 SV Sbjct: 200 GQSV 203 >gi|283470457|emb|CAQ49668.1| ribonuclease HII (RNase HII) [Staphylococcus aureus subsp. aureus ST398] Length = 255 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E +++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKNYPEYGFEKNAGYGTKQHLL 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G HR +F P+++L Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254 >gi|218197065|gb|EEC79492.1| hypothetical protein OsI_20541 [Oryza sativa Indica Group] Length = 501 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 82/176 (46%), Positives = 108/176 (61%), Gaps = 2/176 (1%) Query: 32 VGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQY 90 VGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I + A+ S+ A Sbjct: 323 VGRGPLVGAVVTAAVILDPAQPIVGLADSKKLSEKRRLALYDEIVAKALSWSLGRAEPAE 382 Query: 91 IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAAS 150 ID+ NI AT+ A+ AV L + P LIDG P LP ++ AV+KGDS I+AAS Sbjct: 383 IDQLNILHATMLAMQRAVAGLHIAPDMVLIDGNRCP-SLPMRSQAVVKGDSRVAEISAAS 441 Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 I+AKVTRDR M ++PDYGF H GYPTA H + + G + HR +F P++ Sbjct: 442 ILAKVTRDREMAELDSEFPDYGFAQHKGYPTAFHLERLAALGATEHHRRSFAPVKR 497 >gi|223044238|ref|ZP_03614275.1| ribonuclease HII (RNase HII) [Staphylococcus capitis SK14] gi|222442388|gb|EEE48496.1| ribonuclease HII (RNase HII) [Staphylococcus capitis SK14] Length = 256 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 120/201 (59%), Gaps = 10/201 (4%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR-- 68 H+E E ++ N + GIDEVGRG LAGPVV A+IL+ + G+NDSKK+ K+R Sbjct: 60 HYENE-ILNHDNEALICGIDEVGRGPLAGPVVACAVILNKGHHYLGLNDSKKVPAKQRLI 118 Query: 69 --EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 EEL +TS A A+ Q ID NI+KAT A+ A+ L + P LID + Sbjct: 119 LNEELKNNVTSYAY---GIATPQEIDDLNIYKATQVAMQRAINQLSIQPTHLLIDAMKLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D+P ++IKGD+ S+SIAAASI+AK RD M+ YP+YGF+ +VGY T +H + Sbjct: 176 NDIP--QISIIKGDAKSVSIAAASIMAKEYRDNYMKELANDYPNYGFEKNVGYGTKQHLE 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I G HR +F P++++ Sbjct: 234 AIDTFGVINEHRKSFEPIKSM 254 >gi|332530821|ref|ZP_08406747.1| ribonuclease HII [Hylemonella gracilis ATCC 19624] gi|332039733|gb|EGI76133.1| ribonuclease HII [Hylemonella gracilis ATCC 19624] Length = 196 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 81/187 (43%), Positives = 118/187 (63%), Gaps = 6/187 (3%) Query: 23 MWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 MW +AG+DE GRG LAGPVV AA+ILD N G++DSKK++ +RE LY++I + Sbjct: 1 MWDTPGLLAGVDEAGRGPLAGPVVAAAVILDELNPIEGLDDSKKLTAARRERLYDEIRAK 60 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A+ +++ AS + ID NI +ATL A+ AV L++ P L+DG +P L + AV+ Sbjct: 61 ALCCAVAEASVEEIDALNILQATLLAMRRAVGGLRLKPSKVLVDGNQLPR-LSVLSEAVV 119 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 +GD++ +I+AASI+AKV RDR +++P YGF +H GY TA H + G H Sbjct: 120 RGDALVPAISAASILAKVHRDRWCLSYDREFPQYGFAAHKGYGTAVHLAALHMHGACPQH 179 Query: 198 RLTFRPL 204 R +F P+ Sbjct: 180 RRSFAPV 186 >gi|145589618|ref|YP_001156215.1| ribonuclease H [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|189043639|sp|A4SYT7|RNH2_POLSQ RecName: Full=Ribonuclease HII; Short=RNase HII gi|145048024|gb|ABP34651.1| RNase HII [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 196 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 89/191 (46%), Positives = 116/191 (60%), Gaps = 6/191 (3%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-I 80 NM V G+DE GRG L G VV A++LDP N G+ DSKK+S +RE LYE+I A Sbjct: 2 NMIWVCGVDEAGRGPLVGAVVAGAVVLDPENPIEGLKDSKKLSAVRREFLYEQIMEKAKA 61 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQV----IPRSALIDGRSIPEDLPCQAFAV 136 + AS ID NI +AT+ A+ AVE+L P ALIDG PE L A A+ Sbjct: 62 WGVGEASPTEIDSINILQATMLAMRRAVEDLAARLGEWPSKALIDGNRCPE-LSIAAEAI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 +KGD+ +I+AASI+AKVTRDR M H+++P YGF H+GYPT H +K+ G Sbjct: 121 VKGDTKEPAISAASIVAKVTRDRQMIALHEQHPQYGFSQHMGYPTEAHFAALKQYGVCTE 180 Query: 197 HRLTFRPLRNL 207 HR +F P+R + Sbjct: 181 HRKSFAPVRRV 191 >gi|94310391|ref|YP_583601.1| ribonuclease HII [Cupriavidus metallidurans CH34] gi|189043647|sp|Q1LNE4|RNH2_RALME RecName: Full=Ribonuclease HII; Short=RNase HII gi|93354243|gb|ABF08332.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Cupriavidus metallidurans CH34] Length = 226 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 81/187 (43%), Positives = 120/187 (64%), Gaps = 7/187 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + G+DE GRG LAGPV AA++L+P G+ DSK +S +KRE L+++I A+ I+ Sbjct: 26 LCGVDEAGRGPLAGPVYAAAVVLNPARQIRGLADSKILSAEKREALFDRICDHALGWHIA 85 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE-DLPCQAFAVIKGD 140 SAS + ID NI A++ A+ AV+ L VIP +DG P+ P +A ++KGD Sbjct: 86 SASVEEIDSINILHASMLAMQRAVQGLAASGVIPDLVQVDGNRCPQVAFPVEA--IVKGD 143 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + +I+AASI+AKV RDR + H++YP+YGFDSH GYPT +H +++ G + HR + Sbjct: 144 AKVRAISAASILAKVARDRELLKLHQEYPEYGFDSHFGYPTPQHFTALEQFGATPHHRRS 203 Query: 201 FRPLRNL 207 F P+R + Sbjct: 204 FAPVRKV 210 >gi|220931581|ref|YP_002508489.1| Ribonuclease H [Halothermothrix orenii H 168] gi|219992891|gb|ACL69494.1| Ribonuclease H [Halothermothrix orenii H 168] Length = 308 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/181 (46%), Positives = 119/181 (65%), Gaps = 1/181 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DE GRG LAGPVV AA++ P G++DSKK++ K+RE L+E+I A+ I + Sbjct: 75 IAGVDEAGRGPLAGPVVAAAVVFKPETKVLGLDDSKKLTAKERETLFEEIYDRALSIGVG 134 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 ++ IDK NI A+L A+ A+++L LIDG++ +L + AVI GD+ Sbjct: 135 IVDNKDIDKLNILNASLKAMKKALDSLSCPVDYILIDGKNKLSELNIKQQAVIDGDNKVN 194 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASIIAKVTRDR++ HKKYP+YGF ++ GY T +H + +K GPS IHR +F + Sbjct: 195 VIAAASIIAKVTRDRILDKLHKKYPEYGFINNKGYGTREHIEALKAYGPSPIHRYSFSLV 254 Query: 205 R 205 R Sbjct: 255 R 255 >gi|307107517|gb|EFN55760.1| hypothetical protein CHLNCDRAFT_23163 [Chlorella variabilis] Length = 311 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 81/198 (40%), Positives = 115/198 (58%), Gaps = 6/198 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P E E + ++ VAG+DE GRG LAGPVV AA ++ + G++DSKK+S ++RE Sbjct: 80 PSREFERELWQQGYARVAGVDEAGRGPLAGPVVAAACVVPEHVDIAGMDDSKKLSAQQRE 139 Query: 70 ELYEKITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 LY ++T + + + ID NI +A L A+ A L P L+DG +P+ Sbjct: 140 ALYAQLTGHPDVLWAACVVEAEEIDAINILQAALKAMEGAAAGLTAQPDFLLVDGNRLPK 199 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 ++ ++KGDS S IAAAS+IAKVTRDRLM H+ +P Y F H GY +H + Sbjct: 200 ----RSRPIVKGDSKSYCIAAASVIAKVTRDRLMEQHHEHWPQYNFAGHKGYCVPEHVEA 255 Query: 188 IKEKGPSCIHRLTFRPLR 205 I++ GP +HR TF P R Sbjct: 256 IRQHGPCPVHRRTFAPTR 273 >gi|298694537|gb|ADI97759.1| ribonuclease HII [Staphylococcus aureus subsp. aureus ED133] Length = 255 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E +++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAYAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G HR +F P+++L Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254 >gi|254479478|ref|ZP_05092803.1| ribonuclease HII [Carboxydibrachium pacificum DSM 12653] gi|214034582|gb|EEB75331.1| ribonuclease HII [Carboxydibrachium pacificum DSM 12653] Length = 236 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 85/188 (45%), Positives = 114/188 (60%), Gaps = 2/188 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + E+ + +AG+DE GRG L GPVV A +IL INDSKK+ +KRE+L E Sbjct: 43 EKKLYEEGLNFIAGVDEAGRGPLVGPVVAACVILPKEIFIPEINDSKKLPEEKREKLAEV 102 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI I + ID+ NI ATL A+ A+ ++ L+D SIP D+P + Sbjct: 103 IKKEAISYGIGIVDCREIDEINILNATLKAMKKAIFEVKEKIEYLLVDAISIP-DMPIKQ 161 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++KGDS S+SIAAASI+AKV RDR+MR HK YP Y F + GY T +H + +K+ GP Sbjct: 162 LPIVKGDSKSISIAAASILAKVERDRIMREYHKLYPQYNFAKNKGYGTKEHIEALKKHGP 221 Query: 194 SCIHRLTF 201 IHR T+ Sbjct: 222 CPIHRRTY 229 >gi|329733653|gb|EGG69981.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 21193] Length = 255 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E +++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKNYPEYGFEKNAGYGTKQHLL 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G HR +F P+++L Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254 >gi|94990506|ref|YP_598606.1| ribonuclease HII [Streptococcus pyogenes MGAS10270] gi|166226660|sp|Q1JGT2|RNH2_STRPD RecName: Full=Ribonuclease HII; Short=RNase HII gi|94544014|gb|ABF34062.1| Ribonuclease HII [Streptococcus pyogenes MGAS10270] Length = 263 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/204 (42%), Positives = 127/204 (62%), Gaps = 12/204 (5%) Query: 14 LEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LEAM+ EK ++ +AGIDEVGRG LAGPVV A +IL + G+NDSKKI K Sbjct: 55 LEAMLSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKSK 114 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR 123 E +Y+ + A+ I I +Q ID+ NI++AT A+ A++ L+ P LID Sbjct: 115 HETIYQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAM 174 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 ++ D+ +++KGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T + Sbjct: 175 TL--DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKE 232 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H Q +K G + IHR +F P++++ Sbjct: 233 HLQGLKAYGITPIHRKSFEPVKSM 256 >gi|218782471|ref|YP_002433789.1| ribonuclease H [Desulfatibacillum alkenivorans AK-01] gi|218763855|gb|ACL06321.1| Ribonuclease H [Desulfatibacillum alkenivorans AK-01] Length = 224 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 89/193 (46%), Positives = 118/193 (61%), Gaps = 6/193 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE EA +K +AG+DE GRG LAGPVV AA++L N G++DSKK++ KKR+ L Sbjct: 26 FENEA--HKKGYTRIAGVDEAGRGPLAGPVVSAAVVLPGNADLPGVDDSKKLTPKKRDAL 83 Query: 72 YEKITSSAIISISSASHQY-IDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPEDL 129 +E I AI ID+ NI +A+L ++ +VENL+ P LIDG I L Sbjct: 84 FESIYEQAIGIGIGIIDPVEIDRINILQASLLSMLVSVENLEPAPDYLLIDGPFGIKSFL 143 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P + GDS+S+SIAAASI+AKVTRDRLM +++P +GF H GY T H++ I Sbjct: 144 PQTP--IKHGDSLSISIAAASIVAKVTRDRLMERYDQEFPAFGFAKHKGYGTKAHREAIS 201 Query: 190 EKGPSCIHRLTFR 202 GP IHR +FR Sbjct: 202 LNGPCSIHRFSFR 214 >gi|21910354|ref|NP_664622.1| ribonuclease HII [Streptococcus pyogenes MGAS315] gi|28895931|ref|NP_802281.1| ribonuclease HII [Streptococcus pyogenes SSI-1] gi|32171668|sp|Q8K7G7|RNH2_STRP3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|21904551|gb|AAM79425.1| putative ribonuclease HII [Streptococcus pyogenes MGAS315] gi|28811181|dbj|BAC64114.1| putative ribonuclease HII [Streptococcus pyogenes SSI-1] Length = 263 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/204 (42%), Positives = 127/204 (62%), Gaps = 12/204 (5%) Query: 14 LEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LEAM+ EK ++ +AGIDEVGRG LAGPVV A +IL + G+NDSKKI K Sbjct: 55 LEAMLSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKAK 114 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR 123 E +Y+ + A+ I I +Q ID+ NI++AT A+ A++ L+ P LID Sbjct: 115 HETIYQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAM 174 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 ++ D+ +++KGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T + Sbjct: 175 TL--DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKE 232 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H Q +K G + IHR +F P++++ Sbjct: 233 HLQELKAYGITPIHRKSFEPVKSM 256 >gi|288818751|ref|YP_003433099.1| ribonuclease HII [Hydrogenobacter thermophilus TK-6] gi|288788151|dbj|BAI69898.1| ribonuclease HII [Hydrogenobacter thermophilus TK-6] gi|308752338|gb|ADO45821.1| Ribonuclease H [Hydrogenobacter thermophilus TK-6] Length = 198 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 88/194 (45%), Positives = 116/194 (59%), Gaps = 5/194 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E EK + VAG+DE GRG LAGPVV A+IL P PF DSK++S ++REE Y Sbjct: 3 EYELPFWEKGLL-VAGVDEAGRGPLAGPVVACALILPPFTEPFIDRDSKRMSAREREEAY 61 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I S AI I + ID+ NIH+A A+ A+E+L+ P +I E C Sbjct: 62 ELIKSKAIAIGTAVVDSVVIDRINIHRAVKLAMKRALEDLKH-PFDVVITDFVKLEGYNC 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++KGD SLS A AS++AKV RDR+M HK +P Y F H GYPT +H+++IK Sbjct: 121 --LPLVKGDEKSLSCACASVVAKVLRDRIMEHYHKVFPQYEFAQHKGYPTRRHRELIKTY 178 Query: 192 GPSCIHRLTFRPLR 205 G + IHR +F+ LR Sbjct: 179 GFTEIHRRSFKTLR 192 >gi|261379547|ref|ZP_05984120.1| ribonuclease HII [Neisseria subflava NJ9703] gi|284798018|gb|EFC53365.1| ribonuclease HII [Neisseria subflava NJ9703] Length = 208 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/183 (45%), Positives = 111/183 (60%), Gaps = 3/183 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L + I A+ SI+ Sbjct: 18 AGVDEAGRGPLVGSVFAAAVILPEHFDLP-GLTDSKKLSEKKRDMLAQMIKEQAVAWSIA 76 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A I + NI AT+ A+ AVE L V P IDG +P+DL A AV+KGDS + Sbjct: 77 FADPDEILQLNILHATMAAMKRAVEGLSVTPDKVWIDGNRVPKDLNVPAEAVVKGDSKII 136 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AAS++AK RD M K+YP YGFD H GY TA+H +K+ G HR F P+ Sbjct: 137 EISAASVLAKTARDAEMYELAKRYPQYGFDRHKGYGTAQHLAALKQYGVLPEHRRNFAPV 196 Query: 205 RNL 207 + L Sbjct: 197 KTL 199 >gi|189425513|ref|YP_001952690.1| ribonuclease HII [Geobacter lovleyi SZ] gi|189421772|gb|ACD96170.1| Ribonuclease H [Geobacter lovleyi SZ] Length = 208 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 94/193 (48%), Positives = 122/193 (63%), Gaps = 6/193 (3%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 HFE +A R VAGIDE GRG LAGPV+ AA+IL+P+ G+NDSKK++ ++RE Sbjct: 15 HFERQA--RAAGYTFVAGIDEAGRGPLAGPVIAAAVILNPDAPVEGVNDSKKLTEQRRER 72 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPED 128 L+E I + A+ + + ID+ NI +AT A+ AV+ L P LIDG +I Sbjct: 73 LFELIMARALAVGVGQVDAATIDQINILQATRRAMLAAVQALSASPDLLLIDGITTIASP 132 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LP Q + +GDS S SIAAASIIAKVTRDR+M K YPDYGF H GY +A H + Sbjct: 133 LPQQT--IKQGDSRSASIAAASIIAKVTRDRMMGAYDKLYPDYGFLRHKGYGSAVHLAAL 190 Query: 189 KEKGPSCIHRLTF 201 ++ GP IHR+TF Sbjct: 191 RQHGPCPIHRMTF 203 >gi|57651813|ref|YP_186119.1| ribonuclease HII [Staphylococcus aureus subsp. aureus COL] gi|87160122|ref|YP_493834.1| ribonuclease HII [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194952|ref|YP_499752.1| ribonuclease HII [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221366|ref|YP_001332188.1| ribonuclease HII [Staphylococcus aureus subsp. aureus str. Newman] gi|161509410|ref|YP_001575069.1| ribonuclease HII [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142034|ref|ZP_03566527.1| ribonuclease HII [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452543|ref|ZP_05700549.1| ribonuclease HII [Staphylococcus aureus A5948] gi|262048142|ref|ZP_06021029.1| RNase HII [Staphylococcus aureus D30] gi|282920028|ref|ZP_06327757.1| ribonuclease HII [Staphylococcus aureus A9765] gi|284024237|ref|ZP_06378635.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 132] gi|294848239|ref|ZP_06788986.1| ribonuclease HII [Staphylococcus aureus A9754] gi|304381192|ref|ZP_07363845.1| ribonuclease HII [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|71153704|sp|Q5HGI8|RNH2_STAAC RecName: Full=Ribonuclease HII; Short=RNase HII gi|97189306|sp|Q2FHJ4|RNH2_STAA3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|122539702|sp|Q2FZ38|RNH2_STAA8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|172048860|sp|A6QGE4|RNH2_STAAE RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043665|sp|A8Z3S4|RNH2_STAAT RecName: Full=Ribonuclease HII; Short=RNase HII gi|57285999|gb|AAW38093.1| ribonuclease HII [Staphylococcus aureus subsp. aureus COL] gi|87126096|gb|ABD20610.1| ribonuclease HII [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202510|gb|ABD30320.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374166|dbj|BAF67426.1| ribonuclease HII [Staphylococcus aureus subsp. aureus str. Newman] gi|160368219|gb|ABX29190.1| ribonuclease H [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257859761|gb|EEV82603.1| ribonuclease HII [Staphylococcus aureus A5948] gi|259163708|gb|EEW48263.1| RNase HII [Staphylococcus aureus D30] gi|269940736|emb|CBI49117.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus TW20] gi|282594744|gb|EFB99728.1| ribonuclease HII [Staphylococcus aureus A9765] gi|294825039|gb|EFG41461.1| ribonuclease HII [Staphylococcus aureus A9754] gi|302751067|gb|ADL65244.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340175|gb|EFM06116.1| ribonuclease HII [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198484|gb|EFU28813.1| ribonuclease H [Staphylococcus aureus subsp. aureus CGS01] gi|320140940|gb|EFW32787.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MRSA131] gi|320144345|gb|EFW36111.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MRSA177] gi|329313913|gb|AEB88326.1| Ribonuclease HII [Staphylococcus aureus subsp. aureus T0131] gi|329728949|gb|EGG65363.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 21189] Length = 255 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E +++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G HR +F P+++L Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254 >gi|19746108|ref|NP_607244.1| ribonuclease HII [Streptococcus pyogenes MGAS8232] gi|94994428|ref|YP_602526.1| ribonuclease HII [Streptococcus pyogenes MGAS10750] gi|32171675|sp|Q8P109|RNH2_STRP8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226661|sp|Q1J6K1|RNH2_STRPF RecName: Full=Ribonuclease HII; Short=RNase HII gi|19748282|gb|AAL97743.1| putative ribonuclease HII [Streptococcus pyogenes MGAS8232] gi|94547936|gb|ABF37982.1| Ribonuclease HII [Streptococcus pyogenes MGAS10750] Length = 263 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/204 (42%), Positives = 124/204 (60%), Gaps = 12/204 (5%) Query: 14 LEAMVR------EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LEAM+ +K +AGIDEVGRG LAGPVV A +IL G+NDSKKI K Sbjct: 55 LEAMLSYEKALYKKGYQAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKAK 114 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR 123 E +Y+ + A+ I I +Q ID+ NI++AT A+ A++ L+ P LID Sbjct: 115 HETIYQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAM 174 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 ++ D+ ++IKGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T + Sbjct: 175 TL--DIAISQQSIIKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKE 232 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H Q +K G + IHR +F P++++ Sbjct: 233 HLQGLKAYGITPIHRKSFEPVKSM 256 >gi|319638850|ref|ZP_07993608.1| ribonuclease HII [Neisseria mucosa C102] gi|317399754|gb|EFV80417.1| ribonuclease HII [Neisseria mucosa C102] Length = 230 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/183 (45%), Positives = 112/183 (61%), Gaps = 3/183 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L + I A+ SI+ Sbjct: 40 AGVDEAGRGPLVGSVFAAAVILPEHFDLP-GLTDSKKLSEKKRDMLAQMIKEQAVAWSIA 98 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A I + NI AT+ A+ A+E L V+P IDG +P+DL A AV+KGDS + Sbjct: 99 FADPDEILQLNILHATMAAMKRAIEGLSVVPDKVWIDGNRVPKDLNVPAEAVVKGDSKII 158 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AAS++AK RD M K+YP YGFD H GY TA+H +K+ G HR F P+ Sbjct: 159 EISAASVLAKTARDAEMYELAKRYPQYGFDRHKGYGTAQHLAALKQYGVLPEHRRDFAPV 218 Query: 205 RNL 207 + L Sbjct: 219 KTL 221 >gi|297544719|ref|YP_003677021.1| Ribonuclease H [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842494|gb|ADH61010.1| Ribonuclease H [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 242 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/188 (46%), Positives = 115/188 (61%), Gaps = 2/188 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + + N+ +AGIDE GRG L GPVV A +IL N INDSKK+S +KRE L E Sbjct: 49 ENQLYQLNLNFIAGIDEAGRGPLVGPVVAACVILPKNVFIPEINDSKKLSEEKREVLSEV 108 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI +I + IDK NI AT A+ A+ +Q L+D +IP+ + Sbjct: 109 IKKVAISYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQ-IEINQ 167 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 A+IKGDS S+SIAAASI+AKV RD++M+ HK YP Y F+ + GY T +H + +K+ GP Sbjct: 168 KAIIKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYGP 227 Query: 194 SCIHRLTF 201 IHR TF Sbjct: 228 CPIHRKTF 235 >gi|158320503|ref|YP_001513010.1| ribonuclease H [Alkaliphilus oremlandii OhILAs] gi|189043610|sp|A8MHC7|RNH2_ALKOO RecName: Full=Ribonuclease HII; Short=RNase HII gi|158140702|gb|ABW19014.1| Ribonuclease H [Alkaliphilus oremlandii OhILAs] Length = 203 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 85/199 (42%), Positives = 120/199 (60%), Gaps = 9/199 (4%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P ++E+ + +A DEVGRG L G V+ AA+I+ + I G+ DSKK+SHKKRE Sbjct: 2 PTIDIESAIWNSGYENIACCDEVGRGCLFGSVLAAAVIMPKDVIIDGVKDSKKLSHKKRE 61 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALIDG 122 +LYE I ++ I + + S + IDK NI AT A+ A+ +L+ V P LID Sbjct: 62 QLYEIIKEKSLAIGVGTVSSEIIDKINIKNATRLAMKKAILSLKDKDGNIVAPDYILIDA 121 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 I D+P AVIKGD + IAAASI+AKV RDRL + +++P+YG + GY T Sbjct: 122 EEI--DVPTPQSAVIKGDDLCHGIAAASIVAKVLRDRLCQRWEEEHPNYGIGQNKGYGTK 179 Query: 183 KHQQVIKEKGPSCIHRLTF 201 H++ +KE GPS +HR +F Sbjct: 180 AHREALKEHGPSPMHRKSF 198 >gi|82750847|ref|YP_416588.1| ribonuclease HII [Staphylococcus aureus RF122] gi|97189311|sp|Q2YXM2|RNH2_STAAB RecName: Full=Ribonuclease HII; Short=RNase HII gi|82656378|emb|CAI80797.1| ribonuclease HII [Staphylococcus aureus RF122] Length = 255 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E +++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACAPILNSNHNYLGLDDSKKVPVTK 115 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAFAFGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G HR +F P+++L Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254 >gi|15924234|ref|NP_371768.1| ribonuclease HII [Staphylococcus aureus subsp. aureus Mu50] gi|15926827|ref|NP_374360.1| ribonuclease HII [Staphylococcus aureus subsp. aureus N315] gi|148267735|ref|YP_001246678.1| ribonuclease HII [Staphylococcus aureus subsp. aureus JH9] gi|150393793|ref|YP_001316468.1| ribonuclease HII [Staphylococcus aureus subsp. aureus JH1] gi|156979565|ref|YP_001441824.1| ribonuclease HII [Staphylococcus aureus subsp. aureus Mu3] gi|255006031|ref|ZP_05144632.2| ribonuclease HII [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795700|ref|ZP_05644679.1| ribonuclease HII [Staphylococcus aureus A9781] gi|258415924|ref|ZP_05682194.1| ribonuclease HII [Staphylococcus aureus A9763] gi|258421686|ref|ZP_05684610.1| ribonuclease HII [Staphylococcus aureus A9719] gi|258434842|ref|ZP_05688916.1| ribonuclease HII [Staphylococcus aureus A9299] gi|258444582|ref|ZP_05692911.1| ribonuclease HII [Staphylococcus aureus A8115] gi|258447585|ref|ZP_05695729.1| ribonuclease HII [Staphylococcus aureus A6300] gi|258449427|ref|ZP_05697530.1| ribonuclease HII [Staphylococcus aureus A6224] gi|258454806|ref|ZP_05702770.1| ribonuclease HII [Staphylococcus aureus A5937] gi|269202860|ref|YP_003282129.1| ribonuclease HII [Staphylococcus aureus subsp. aureus ED98] gi|282892732|ref|ZP_06300967.1| ribonuclease HII [Staphylococcus aureus A8117] gi|282927586|ref|ZP_06335202.1| ribonuclease HII [Staphylococcus aureus A10102] gi|295406179|ref|ZP_06815986.1| ribonuclease HII [Staphylococcus aureus A8819] gi|296274801|ref|ZP_06857308.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MR1] gi|297244407|ref|ZP_06928290.1| ribonuclease HII [Staphylococcus aureus A8796] gi|54039252|sp|P66676|RNH2_STAAN RecName: Full=Ribonuclease HII; Short=RNase HII gi|54042175|sp|P66675|RNH2_STAAM RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226657|sp|A7X1L7|RNH2_STAA1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043663|sp|A6U163|RNH2_STAA2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043664|sp|A5ISC9|RNH2_STAA9 RecName: Full=Ribonuclease HII; Short=RNase HII gi|13701044|dbj|BAB42339.1| RNase HII [Staphylococcus aureus subsp. aureus N315] gi|14247014|dbj|BAB57406.1| RNase HII [Staphylococcus aureus subsp. aureus Mu50] gi|147740804|gb|ABQ49102.1| RNase HII [Staphylococcus aureus subsp. aureus JH9] gi|149946245|gb|ABR52181.1| Ribonuclease H [Staphylococcus aureus subsp. aureus JH1] gi|156721700|dbj|BAF78117.1| RNase HII [Staphylococcus aureus subsp. aureus Mu3] gi|257789672|gb|EEV28012.1| ribonuclease HII [Staphylococcus aureus A9781] gi|257839260|gb|EEV63734.1| ribonuclease HII [Staphylococcus aureus A9763] gi|257842372|gb|EEV66797.1| ribonuclease HII [Staphylococcus aureus A9719] gi|257849203|gb|EEV73185.1| ribonuclease HII [Staphylococcus aureus A9299] gi|257850075|gb|EEV74028.1| ribonuclease HII [Staphylococcus aureus A8115] gi|257853776|gb|EEV76735.1| ribonuclease HII [Staphylococcus aureus A6300] gi|257857415|gb|EEV80313.1| ribonuclease HII [Staphylococcus aureus A6224] gi|257863189|gb|EEV85953.1| ribonuclease HII [Staphylococcus aureus A5937] gi|262075150|gb|ACY11123.1| ribonuclease HII [Staphylococcus aureus subsp. aureus ED98] gi|282590589|gb|EFB95666.1| ribonuclease HII [Staphylococcus aureus A10102] gi|282764729|gb|EFC04854.1| ribonuclease HII [Staphylococcus aureus A8117] gi|285816926|gb|ADC37413.1| Ribonuclease HII [Staphylococcus aureus 04-02981] gi|294968767|gb|EFG44789.1| ribonuclease HII [Staphylococcus aureus A8819] gi|297178437|gb|EFH37683.1| ribonuclease HII [Staphylococcus aureus A8796] gi|312829638|emb|CBX34480.1| ribonuclease HII (RNase HII) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131038|gb|EFT87022.1| RNase HII [Staphylococcus aureus subsp. aureus CGS03] gi|329727171|gb|EGG63627.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 21172] Length = 255 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E +++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPITK 115 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G HR +F P+++L Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254 >gi|255655274|ref|ZP_05400683.1| ribonuclease HII [Clostridium difficile QCD-23m63] gi|296451258|ref|ZP_06892998.1| ribonuclease H [Clostridium difficile NAP08] gi|296880390|ref|ZP_06904353.1| ribonuclease H [Clostridium difficile NAP07] gi|296259864|gb|EFH06719.1| ribonuclease H [Clostridium difficile NAP08] gi|296428631|gb|EFH14515.1| ribonuclease H [Clostridium difficile NAP07] Length = 255 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 81/188 (43%), Positives = 116/188 (61%), Gaps = 4/188 (2%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 K + GIDE GRG LAGPVV + ++ + G+NDSKK+S KR+EL+E I A+ Sbjct: 70 KGYLYIGGIDEAGRGPLAGPVVASVVVFKKDTKIEGVNDSKKLSEAKRDELFEVIKEEAL 129 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 I +++ ID+ NI AT A+ A+ L+ P L+D +IP + ++KG Sbjct: 130 DYGIGIVNNEEIDEFNILNATYMAMKKAINCLKKAPDYLLVDAATIP-GIDIAQNPIVKG 188 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS S+SIAAASI+AKVTRD +M + YP+YGF SH GY T +H + I++ G + IHR Sbjct: 189 DSKSISIAAASILAKVTRDSIMYQYDRVYPEYGFKSHKGYGTKEHYEAIEKYGITPIHRK 248 Query: 200 TFRPLRNL 207 +F L+N+ Sbjct: 249 SF--LKNI 254 >gi|315150451|gb|EFT94467.1| ribonuclease HII [Enterococcus faecalis TX0012] Length = 255 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 89/183 (48%), Positives = 122/183 (66%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KKRE LY +I A+ I + Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLYNQIQEQAVAIGLG 133 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI++AT A+ A+++L P LID + D+P ++IKGD+ S+ Sbjct: 134 IADQGVIDQINIYQATKQAMKMAIDDLAFTPDYLLIDAMQL--DVPQPQESLIKGDARSI 191 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASIIAKVTRDRLM + YP YGF ++ GY T +H +++ G + IHR TF P+ Sbjct: 192 SIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKYGVTPIHRRTFAPI 251 Query: 205 RNL 207 +++ Sbjct: 252 KDM 254 >gi|160872277|ref|ZP_02062409.1| ribonuclease HII [Rickettsiella grylli] gi|159121076|gb|EDP46414.1| ribonuclease HII [Rickettsiella grylli] Length = 191 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/185 (45%), Positives = 112/185 (60%), Gaps = 2/185 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 VAG+DE GRG LAGPV AA+ILD G+ DSK+++ K RE +KI A +I Sbjct: 6 VAGVDEAGRGPLAGPVFAAAVILDNKKKMTGLKDSKQLTAKSREYFAKKIQEKAKTWAIG 65 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + IDK NI A L A+ AV L +IP L+DG+ P+ L + A+IKGD Sbjct: 66 RAEVEEIDKLNIFHACLLAMKRAVCALALIPDFVLVDGKHCPQ-LSVPSKAIIKGDEKIT 124 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKV RD M + +YP YGF H GY T +H +K+ GPS IHR +F P+ Sbjct: 125 AISAASILAKVHRDANMVLLDAEYPGYGFAQHKGYTTKQHLLALKKLGPSPIHRRSFAPI 184 Query: 205 RNLSV 209 R+ + Sbjct: 185 RHYEL 189 >gi|120555445|ref|YP_959796.1| ribonuclease H [Marinobacter aquaeolei VT8] gi|189043693|sp|A1U3P0|RNH2_MARAV RecName: Full=Ribonuclease HII; Short=RNase HII gi|120325294|gb|ABM19609.1| RNase HII [Marinobacter aquaeolei VT8] Length = 227 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 81/182 (44%), Positives = 112/182 (61%), Gaps = 4/182 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSKK++ KKR LY+ I ++A S+ Sbjct: 18 LAGVDEVGRGPLIGAVVTAAVILDPARPIPGLADSKKLTEKKRLRLYDDILENAAAWSLG 77 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 ID+ NI++AT+ A+ AVE L + P L+DG P+ P + VIKGDS Sbjct: 78 RCEASEIDELNIYQATMLAMKRAVEGLSIAPEYVLVDGNRCPKWQWPSEP--VIKGDSRV 135 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKVTRDR M ++P +G H GYPT H + + G + HR +FRP Sbjct: 136 EAISAASILAKVTRDREMEALDVRFPGFGLAQHKGYPTPVHLEALNRLGVTPEHRRSFRP 195 Query: 204 LR 205 ++ Sbjct: 196 VK 197 >gi|325479041|gb|EGC82142.1| ribonuclease HII [Anaerococcus prevotii ACS-065-V-Col13] Length = 209 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 81/177 (45%), Positives = 109/177 (61%), Gaps = 3/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AGIDEVGRG LAGPVV A+I+ ++ GI DSKK+S KK L EKI I + Sbjct: 21 IAGIDEVGRGPLAGPVVTCAVIMKSDSAIDGITDSKKLSRKKMLNLKEKILEDTICYAYG 80 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A+ + ID+ NI AT A+ A+ NL++ P LID I D+P ++KGD Sbjct: 81 YANPRLIDRVNIKNATHKAMEDALNNLKIKPEIVLIDAERIDTDIP--QLNIVKGDLNEY 138 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I+ ASI+AK+ RD +M K YP+YGFD+++GY T KH Q ++E G + IHR TF Sbjct: 139 VISCASILAKIRRDDIMINFSKLYPNYGFDTNMGYGTKKHYQGLEEYGETSIHRQTF 195 >gi|29376207|ref|NP_815361.1| ribonuclease HII [Enterococcus faecalis V583] gi|227518838|ref|ZP_03948887.1| ribonuclease HII [Enterococcus faecalis TX0104] gi|227553455|ref|ZP_03983504.1| ribonuclease HII [Enterococcus faecalis HH22] gi|256961843|ref|ZP_05566014.1| ribonuclease HII [Enterococcus faecalis Merz96] gi|293382908|ref|ZP_06628826.1| ribonuclease HII [Enterococcus faecalis R712] gi|293389603|ref|ZP_06634060.1| ribonuclease HII [Enterococcus faecalis S613] gi|312907622|ref|ZP_07766613.1| ribonuclease HII [Enterococcus faecalis DAPTO 512] gi|312910239|ref|ZP_07769086.1| ribonuclease HII [Enterococcus faecalis DAPTO 516] gi|39932363|sp|Q834J7|RNH2_ENTFA RecName: Full=Ribonuclease HII; Short=RNase HII gi|29343670|gb|AAO81431.1| ribonuclease HII [Enterococcus faecalis V583] gi|227073709|gb|EEI11672.1| ribonuclease HII [Enterococcus faecalis TX0104] gi|227177412|gb|EEI58384.1| ribonuclease HII [Enterococcus faecalis HH22] gi|256952339|gb|EEU68971.1| ribonuclease HII [Enterococcus faecalis Merz96] gi|291079573|gb|EFE16937.1| ribonuclease HII [Enterococcus faecalis R712] gi|291081220|gb|EFE18183.1| ribonuclease HII [Enterococcus faecalis S613] gi|310626650|gb|EFQ09933.1| ribonuclease HII [Enterococcus faecalis DAPTO 512] gi|311289512|gb|EFQ68068.1| ribonuclease HII [Enterococcus faecalis DAPTO 516] gi|315575779|gb|EFU87970.1| ribonuclease HII [Enterococcus faecalis TX0309B] gi|315580431|gb|EFU92622.1| ribonuclease HII [Enterococcus faecalis TX0309A] Length = 255 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 89/183 (48%), Positives = 122/183 (66%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KKRE LY +I A+ I + Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLYNQIQEQAVAIGLG 133 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI++AT A+ A+++L P LID + D+P ++IKGD+ S+ Sbjct: 134 IADQGVIDQINIYQATKQAMKMAIDDLAFTPDYLLIDAMQL--DVPQPQESLIKGDARSI 191 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASIIAKVTRDRLM + YP YGF ++ GY T +H +++ G + IHR TF P+ Sbjct: 192 SIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKYGVTPIHRRTFAPI 251 Query: 205 RNL 207 +++ Sbjct: 252 KDM 254 >gi|139473750|ref|YP_001128466.1| ribonuclease HII [Streptococcus pyogenes str. Manfredo] gi|209559442|ref|YP_002285914.1| ribonuclease HII [Streptococcus pyogenes NZ131] gi|166226662|sp|A2REG0|RNH2_STRPG RecName: Full=Ribonuclease HII; Short=RNase HII gi|238056782|sp|B5XLK7|RNH2_STRPZ RecName: Full=Ribonuclease HII; Short=RNase HII gi|134271997|emb|CAM30235.1| ribonuclease HII [Streptococcus pyogenes str. Manfredo] gi|209540643|gb|ACI61219.1| Ribonuclease HII [Streptococcus pyogenes NZ131] Length = 263 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/204 (42%), Positives = 127/204 (62%), Gaps = 12/204 (5%) Query: 14 LEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LEAM+ EK ++ +AGIDEVGRG LAGPVV A +IL + G+NDSKKI K Sbjct: 55 LEAMLSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKSK 114 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR 123 E +Y+ + A+ I I +Q ID+ NI++AT A+ A++ L+ P LID Sbjct: 115 HETIYQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAM 174 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 ++ D+ +++KGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T + Sbjct: 175 TL--DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKE 232 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H Q +K G + IHR +F P++++ Sbjct: 233 HLQGLKAYGITPIHRKSFEPVKSM 256 >gi|293390804|ref|ZP_06635138.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951338|gb|EFE01457.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D7S-1] Length = 199 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 81/183 (44%), Positives = 114/183 (62%), Gaps = 1/183 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSK +S KKR L E+I A+ ++ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPKQTIEGLADSKTLSEKKRLLLAEEIKQKALAWALG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI A++ A+ A+++L++ P L+DG IP +L A AV+KGD++ Sbjct: 73 RAEPHEIDELNILHASMLAMERAIKHLKIQPHFVLVDGNRIPPNLMIPAQAVVKGDALVP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M KKYP Y F H GYPT H + ++E G +R +F P+ Sbjct: 133 EISAASILAKVARDQEMIELDKKYPPYEFAKHKGYPTKLHLEKLREFGVLPEYRRSFAPV 192 Query: 205 RNL 207 + L Sbjct: 193 KKL 195 >gi|306827335|ref|ZP_07460622.1| ribonuclease HII [Streptococcus pyogenes ATCC 10782] gi|304430482|gb|EFM33504.1| ribonuclease HII [Streptococcus pyogenes ATCC 10782] Length = 263 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/204 (42%), Positives = 127/204 (62%), Gaps = 12/204 (5%) Query: 14 LEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LEAM+ EK ++ +AGIDEVGRG LAGPVV A +IL + G+NDSKKI K Sbjct: 55 LEAMLSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKSK 114 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR 123 E +Y+ + A+ I I +Q ID+ NI++AT A+ A++ L+ P LID Sbjct: 115 HETIYQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAM 174 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 ++ D+ +++KGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T + Sbjct: 175 TL--DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKE 232 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H Q +K G + IHR +F P++++ Sbjct: 233 HLQGLKAYGITPIHRKSFEPVKSM 256 >gi|194289778|ref|YP_002005685.1| ribonuclease hii [Cupriavidus taiwanensis LMG 19424] gi|193223613|emb|CAQ69620.1| RIBONUCLEASE HII PROTEIN [Cupriavidus taiwanensis LMG 19424] Length = 258 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 82/184 (44%), Positives = 113/184 (61%), Gaps = 7/184 (3%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSA 86 G+DE GRG LAGPV AA++LDP G+ DSK ++ KRE LYEKI A+ I+ A Sbjct: 31 GVDEAGRGPLAGPVYAAAVVLDPKRPIRGLADSKILTAAKREALYEKICERALGWHIAFA 90 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE-DLPCQAFAVIKGDSI 142 + + ID NI A++ A+ AV+ L V+P +DG P+ P +A ++KGD++ Sbjct: 91 TVEEIDTINILHASMLAMQRAVQGLAASGVVPDLVQVDGNRCPQVAYPVEA--IVKGDAL 148 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKV RDR + H YP YGFDSHVGY T +H + E G + HR +F Sbjct: 149 VKAISAASILAKVARDRALMELHAAYPQYGFDSHVGYGTPQHMAALAEFGATPHHRRSFA 208 Query: 203 PLRN 206 P+R Sbjct: 209 PVRE 212 >gi|27467840|ref|NP_764477.1| RNase HII [Staphylococcus epidermidis ATCC 12228] gi|57866704|ref|YP_188394.1| ribonuclease HII [Staphylococcus epidermidis RP62A] gi|282876322|ref|ZP_06285189.1| ribonuclease HII [Staphylococcus epidermidis SK135] gi|38258563|sp|Q8CPH6|RNH2_STAES RecName: Full=Ribonuclease HII; Short=RNase HII gi|71153705|sp|Q5HPU6|RNH2_STAEQ RecName: Full=Ribonuclease HII; Short=RNase HII gi|27315385|gb|AAO04519.1|AE016747_16 RNase HII [Staphylococcus epidermidis ATCC 12228] gi|57637362|gb|AAW54150.1| ribonuclease HII [Staphylococcus epidermidis RP62A] gi|281295347|gb|EFA87874.1| ribonuclease HII [Staphylococcus epidermidis SK135] gi|329724332|gb|EGG60844.1| ribonuclease HII [Staphylococcus epidermidis VCU144] gi|329736260|gb|EGG72532.1| ribonuclease HII [Staphylococcus epidermidis VCU028] gi|329736540|gb|EGG72806.1| ribonuclease HII [Staphylococcus epidermidis VCU045] Length = 256 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 79/183 (43%), Positives = 116/183 (63%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG LAGPVV A+IL+ N+ G++DSKK+S K R L + + + + Sbjct: 74 ICGIDEVGRGPLAGPVVACAVILEKNHHYIGLDDSKKVSPKNRARLNQNLKENVYQYAYG 133 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID+ NI++AT A+ A+ L V P LID ++ D+P ++IKGD+ S+ Sbjct: 134 IASSVEIDELNIYRATQLAMLRAINQLDVTPTHLLIDAMTLDIDIP--QTSIIKGDAKSV 191 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASI+AK RD+ MR K++P+YGFD + GY T +H + I + G HR +F P+ Sbjct: 192 SIAAASIMAKEYRDQYMRQLSKQFPEYGFDKNAGYGTKQHLKAIDQVGIINEHRQSFEPI 251 Query: 205 RNL 207 +++ Sbjct: 252 KSM 254 >gi|257085098|ref|ZP_05579459.1| ribonuclease HII [Enterococcus faecalis Fly1] gi|256993128|gb|EEU80430.1| ribonuclease HII [Enterococcus faecalis Fly1] Length = 255 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 89/183 (48%), Positives = 122/183 (66%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KKRE LY +I A+ I + Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLYNQIQEQAVAIGLG 133 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI++AT A+ A+++L P LID + D+P ++IKGD+ S+ Sbjct: 134 IADQGVIDQINIYQATKQAMKMAIDDLAFTPDYLLIDAMQL--DVPQPQESLIKGDARSI 191 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASIIAKVTRDRLM + YP YGF ++ GY T +H +++ G + IHR TF P+ Sbjct: 192 SIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKYGVTPIHRRTFAPI 251 Query: 205 RNL 207 +++ Sbjct: 252 KDM 254 >gi|21282856|ref|NP_645944.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MW2] gi|49486083|ref|YP_043304.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MSSA476] gi|297208110|ref|ZP_06924541.1| ribonuclease H [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912191|ref|ZP_07129634.1| ribonuclease H [Staphylococcus aureus subsp. aureus TCH70] gi|38258614|sp|Q8NX02|RNH2_STAAW RecName: Full=Ribonuclease HII; Short=RNase HII gi|56749521|sp|Q6G9W9|RNH2_STAAS RecName: Full=Ribonuclease HII; Short=RNase HII gi|21204295|dbj|BAB94992.1| RNase HII [Staphylococcus aureus subsp. aureus MW2] gi|49244526|emb|CAG42955.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus MSSA476] gi|296887353|gb|EFH26255.1| ribonuclease H [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886437|gb|EFK81639.1| ribonuclease H [Staphylococcus aureus subsp. aureus TCH70] Length = 255 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E +++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G HR +F P+++L Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254 >gi|260655674|ref|ZP_05861147.1| ribonuclease HII [Jonquetella anthropi E3_33 E1] gi|260629591|gb|EEX47785.1| ribonuclease HII [Jonquetella anthropi E3_33 E1] Length = 195 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 75/181 (41%), Positives = 108/181 (59%), Gaps = 5/181 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 +AG+DE GRG LAGPV+ AA+IL P + G+ DSKK+S KKRE+L+ + ++ Sbjct: 3 LAGVDEAGRGPLAGPVMAAAVILSPEQKNVLVQSGLRDSKKLSAKKREKLFGLMQELGVV 62 Query: 82 -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 + +AS + ID+ NI +ATL A+ AV L P +DG + A++ GD Sbjct: 63 WRLQAASRRRIDRMNILQATLWAMARAVNRLPATPDGVAVDGSQEIPGISLYQQAIVGGD 122 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + I+AAS++AKV RDRLM + YP YG H GY TA+HQ+ + GP+ +HR + Sbjct: 123 DLYPEISAASVVAKVVRDRLMTALDRLYPGYGLAQHKGYGTAQHQEALLRLGPTPLHRRS 182 Query: 201 F 201 F Sbjct: 183 F 183 >gi|209527547|ref|ZP_03276049.1| Ribonuclease H [Arthrospira maxima CS-328] gi|209492035|gb|EDZ92388.1| Ribonuclease H [Arthrospira maxima CS-328] Length = 223 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 85/193 (44%), Positives = 112/193 (58%), Gaps = 6/193 (3%) Query: 20 EKNMWP-VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK 74 E+ W VAGIDEVGRGA GPVV AA+ L I G+ DSKK++H R L Sbjct: 24 EQLSWTAVAGIDEVGRGAWFGPVVAAAVQLSETTILELAAAGVKDSKKLTHNDRLSLSTL 83 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I S AI I AS + ID+ NI +AT A+ ++ LQ P+ L+DG + +L Sbjct: 84 IRSKAIACQIGWASAREIDRLNILQATQLAMRRSILKLQPPPQFCLVDGNRLIPNLSIPQ 143 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 A++KGDS + IAA+SI+AKV RD LM + YP YGF H GY T +H+Q ++ GP Sbjct: 144 QAIVKGDSHCVVIAASSIVAKVWRDELMTRLDRTYPQYGFAQHKGYGTKQHKQALQSYGP 203 Query: 194 SCIHRLTFRPLRN 206 HR +F P+R Sbjct: 204 CFHHRFSFAPVRQ 216 >gi|124007381|ref|ZP_01692088.1| ribonuclease HII [Microscilla marina ATCC 23134] gi|123987214|gb|EAY26954.1| ribonuclease HII [Microscilla marina ATCC 23134] Length = 195 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 80/186 (43%), Positives = 118/186 (63%), Gaps = 1/186 (0%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 N + AG+DEVGRG LAGPVV AA+IL PN + DSKK++ K RE+L + I AI Sbjct: 8 NKYIEAGVDEVGRGCLAGPVVAAAVILPPNYKNELLMDSKKLNKKTREKLRKTIEEEAIS 67 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 +++ ASH ID+ NI A+ A++ A+E L+ P LIDG ++KGD Sbjct: 68 WAVAEASHTEIDEINILNASFLAMHRAIEQLEPEPELLLIDGNRFNPYKFVAYQCIVKGD 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + LSIAAASI+AK RD LM ++P+Y ++++VGYPT KH+ I++ G + HR++ Sbjct: 128 NKFLSIAAASILAKTYRDDLMEKLAVEHPEYDWENNVGYPTKKHRAAIEQHGATPWHRMS 187 Query: 201 FRPLRN 206 F+ +++ Sbjct: 188 FKLIKD 193 >gi|258593814|emb|CBE70155.1| Ribonuclease HII (RNase HII) [NC10 bacterium 'Dutch sediment'] Length = 195 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/195 (42%), Positives = 113/195 (57%), Gaps = 4/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 +E+ +R +AG+DE GRG+LAGPVV AA+IL P G++DSK +S ++RE L Sbjct: 1 MESCLRAAGYRLIAGVDEAGRGSLAGPVVAAAVILSPTCAIKGVDDSKALSAQQRERLDL 60 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPC 131 I S A+ + + ID NI +AT+ A+ AVE L P LIDG P +PC Sbjct: 61 AIMSEAVAVGFGVVQEEMIDALNILQATMLAMRRAVEALNPPPGFVLIDGDQSPRCAIPC 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + + GD + SI+AASI+AKV RDR+MR P YGF H GY T++H I Sbjct: 121 RL--IPSGDRLCFSISAASILAKVARDRIMRAYDLALPHYGFGRHKGYGTSEHLSTIARF 178 Query: 192 GPSCIHRLTFRPLRN 206 G S IHR +F+ +R Sbjct: 179 GVSPIHRKSFKGVRE 193 >gi|312130977|ref|YP_003998317.1| rnase hii [Leadbetterella byssophila DSM 17132] gi|311907523|gb|ADQ17964.1| RNase HII [Leadbetterella byssophila DSM 17132] Length = 192 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 76/177 (42%), Positives = 112/177 (63%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG LAGPVV AA+IL P +NDSK++S + R +L +I + A+ ++ Sbjct: 13 AGVDEAGRGCLAGPVVAAAVILPPGYENEWLNDSKQLSKEDRNQLRTEIENIAVAFAVGQ 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ASH+ IDK NI +A+ A++ A+E L P LIDG ++KGD+ ++ Sbjct: 73 ASHEEIDKINILQASFLAMHRAIEQLSTRPDHLLIDGNRFSPYPLIPHTCIVKGDAKFMN 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD +M I ++YP Y ++++ GYPT H++ I+E G + HR+TFR Sbjct: 133 IAAASILAKTYRDEIMEILSQEYPQYKWEANAGYPTIFHRKAIQEHGFTPYHRMTFR 189 >gi|167627613|ref|YP_001678113.1| ribonuclease HII [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189043598|sp|B0TYD6|RNH2_FRAP2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|167597614|gb|ABZ87612.1| Ribonuclease H [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 185 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 80/183 (43%), Positives = 114/183 (62%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 + GIDE GRG L+GPVV A +ILDP G+ DSKK++ KKR+ LYE IT+ A +I Sbjct: 3 ILGIDEAGRGPLSGPVVAAGVILDPEKTIDGLADSKKLTEKKRQSLYEVITAHAKAYTIV 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S Q ID+ NI +ATL A+ +NL+ L+DG +P + + A++KGDS Sbjct: 63 EVSPQQIDQLNILQATLKAMNQVADNLKGQFDKVLVDGNKLP-NWDYNSEAIVKGDSKVQ 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD + + +P YGF H GYPT +H + I++ G IHR +++P+ Sbjct: 122 EISAASILAKVHRDNICLEHDRLFPQYGFAKHKGYPTKEHLENIRKYGVLNIHRKSYKPI 181 Query: 205 RNL 207 + L Sbjct: 182 QLL 184 >gi|251810677|ref|ZP_04825150.1| ribonuclease HII [Staphylococcus epidermidis BCM-HMP0060] gi|251805837|gb|EES58494.1| ribonuclease HII [Staphylococcus epidermidis BCM-HMP0060] Length = 260 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 79/183 (43%), Positives = 116/183 (63%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG LAGPVV A+IL+ N+ G++DSKK+S K R L + + + + Sbjct: 78 ICGIDEVGRGPLAGPVVACAVILEKNHHYIGLDDSKKVSPKNRARLNQNLKENVYQYAYG 137 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID+ NI++AT A+ A+ L V P LID ++ D+P ++IKGD+ S+ Sbjct: 138 IASSVEIDELNIYRATQLAMLRAINQLDVTPTHLLIDAMTLDIDIP--QTSIIKGDAKSV 195 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASI+AK RD+ MR K++P+YGFD + GY T +H + I + G HR +F P+ Sbjct: 196 SIAAASIMAKEYRDQYMRQLSKQFPEYGFDKNAGYGTKQHLKAIDQVGIINEHRQSFEPI 255 Query: 205 RNL 207 +++ Sbjct: 256 KSM 258 >gi|15643677|ref|NP_228723.1| ribonuclease HII [Thermotoga maritima MSB8] gi|7227928|sp|Q9X017|RNH2_THEMA RecName: Full=Ribonuclease HII; Short=RNase HII gi|4981451|gb|AAD35996.1|AE001755_19 ribonuclease HII [Thermotoga maritima MSB8] Length = 238 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 87/188 (46%), Positives = 114/188 (60%), Gaps = 4/188 (2%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 +K VAG+DE GRG LAGPVV AA++L+ GINDSK++S KRE L ++I A Sbjct: 8 KKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKE--IEGINDSKQLSPAKRERLLDEIMEKA 65 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 + I AS + ID +NI AT A+ A+ENL V P L+DG+ I +P ++KG Sbjct: 66 AVGIGIASPEEIDLYNIFNATKLAMNRALENLSVKPSFVLVDGKGIELSVPGTC--LVKG 123 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D S I AASI+AKV RDRLM H+ YP + F H GY T +H I++ G IHRL Sbjct: 124 DQKSKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKHKGYATKEHLNEIRKNGVLPIHRL 183 Query: 200 TFRPLRNL 207 +F P+ L Sbjct: 184 SFEPVLEL 191 >gi|313754412|pdb|3O3G|A Chain A, T. Maritima Rnase H2 In Complex With Nucleic Acid Substrate And Calcium Ions Length = 222 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 87/188 (46%), Positives = 114/188 (60%), Gaps = 4/188 (2%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 +K VAG+DE GRG LAGPVV AA++L+ GINDSK++S KRE L ++I A Sbjct: 7 KKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKE--IEGINDSKQLSPAKRERLLDEIMEKA 64 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 + I AS + ID +NI AT A+ A+ENL V P L+DG+ I +P ++KG Sbjct: 65 AVGIGIASPEEIDLYNIFNATKLAMNRALENLSVKPSFVLVDGKGIELSVP--GTCLVKG 122 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D S I AASI+AKV RDRLM H+ YP + F H GY T +H I++ G IHRL Sbjct: 123 DQKSKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKHKGYATKEHLNEIRKNGVLPIHRL 182 Query: 200 TFRPLRNL 207 +F P+ L Sbjct: 183 SFEPVLEL 190 >gi|254304340|ref|ZP_04971698.1| ribonuclease H [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324532|gb|EDK89782.1| ribonuclease H [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 217 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/182 (45%), Positives = 113/182 (62%), Gaps = 6/182 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84 V G+DE GRG LAGPVV AA+IL INDSKK++ KKRE+LY+ I + +++ Sbjct: 19 VIGVDEAGRGPLAGPVVAAAVILKEYTEELNEINDSKKLTEKKREKLYDIIMKNFDVAVG 78 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPR----SALIDGRSIPEDLPCQAFAVIKGD 140 ++ + IDK NI A A+ A+ +L+ I + L+DG ++ + F ++KGD Sbjct: 79 ISTVEEIDKLNILNADFLAMRRALNDLKNIKNEKEYTVLVDGNLKIKEYVGKQFPIVKGD 138 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHRL 199 + SLSIAAASIIAKVTRDR M+ YPDY F+ H GY T H +VIK+KG +HR Sbjct: 139 AKSLSIAAASIIAKVTRDRFMKDLASIYPDYCFEKHKGYGTKAHIEVIKDKGAIEGVHRK 198 Query: 200 TF 201 F Sbjct: 199 VF 200 >gi|71903522|ref|YP_280325.1| ribonuclease HII [Streptococcus pyogenes MGAS6180] gi|97189348|sp|Q48TJ0|RNH2_STRPM RecName: Full=Ribonuclease HII; Short=RNase HII gi|71802617|gb|AAX71970.1| ribonuclease HII [Streptococcus pyogenes MGAS6180] Length = 238 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 87/204 (42%), Positives = 127/204 (62%), Gaps = 12/204 (5%) Query: 14 LEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LEAM+ EK ++ +AGIDEVGRG LAGPVV A +IL + G+NDSKKI K Sbjct: 30 LEAMLSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKSK 89 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR 123 E +Y+ + A+ I I +Q ID+ NI++AT A+ A++ L+ P LID Sbjct: 90 HETIYQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAM 149 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 ++ D+ +++KGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T + Sbjct: 150 TL--DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKE 207 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H Q +K G + IHR +F P++++ Sbjct: 208 HLQGLKAYGITPIHRKSFEPVKSM 231 >gi|24373211|ref|NP_717254.1| ribonuclease HII [Shewanella oneidensis MR-1] gi|39932406|sp|Q8EGG1|RNH2_SHEON RecName: Full=Ribonuclease HII; Short=RNase HII gi|24347435|gb|AAN54698.1|AE015610_2 ribonuclease HII [Shewanella oneidensis MR-1] Length = 209 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 87/187 (46%), Positives = 116/187 (62%), Gaps = 5/187 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDPN G+NDSKK++ K+RE L+++I A+ + Sbjct: 20 VAGVDEVGRGPLVGDVVTAAVILDPNRPILGLNDSKKLTEKRREALFDEICEKALSFHVG 79 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP----EDLPCQAFAVIKGD 140 AS ID+ NI AT+ A+ AV L++ P L+DG P + L + ++IKGD Sbjct: 80 RASPAEIDELNILHATMLAMQRAVSGLKLTPALVLVDGNRSPAFTHQGLSLASHSIIKGD 139 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + SI+AASIIAKVTRDR M YP YGF H GYPT H + I E G +R + Sbjct: 140 GLIASISAASIIAKVTRDREMDALDAAYPQYGFAKHKGYPTKAHFEAIAEHGVFDQYRKS 199 Query: 201 FRPLRNL 207 F+P++ L Sbjct: 200 FKPVKAL 206 >gi|50914225|ref|YP_060197.1| ribonuclease HII [Streptococcus pyogenes MGAS10394] gi|68053078|sp|Q5XC49|RNH2_STRP6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|50903299|gb|AAT87014.1| Ribonuclease HII [Streptococcus pyogenes MGAS10394] Length = 263 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/204 (42%), Positives = 124/204 (60%), Gaps = 12/204 (5%) Query: 14 LEAMVR------EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LEAM+ +K +AGIDEVGRG LAGPVV A +IL G+NDSKKI K Sbjct: 55 LEAMLSYEKALYKKGYQAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKAK 114 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR 123 E +Y+ + A+ I I +Q ID+ NI++AT A+ A++ L+ P LID Sbjct: 115 HETIYQAVKEQALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAM 174 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 ++ D+ +++KGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T + Sbjct: 175 TL--DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKE 232 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H Q +K G + IHR +F P++++ Sbjct: 233 HLQGLKAYGITPIHRKSFEPVKSM 256 >gi|323480814|gb|ADX80253.1| ribonuclease HII [Enterococcus faecalis 62] Length = 255 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 89/183 (48%), Positives = 122/183 (66%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KKRE LY +I A+ I + Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLYNQIQEQAVAIGLG 133 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI++AT A+ A+++L P LID + D+P ++IKGD+ S+ Sbjct: 134 IADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLIDAMQL--DVPQPQESLIKGDARSI 191 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASIIAKVTRDRLM + YP YGF ++ GY T +H +++ G + IHR TF P+ Sbjct: 192 SIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKYGVTPIHRRTFAPI 251 Query: 205 RNL 207 +++ Sbjct: 252 KDM 254 >gi|283798046|ref|ZP_06347199.1| ribonuclease HII [Clostridium sp. M62/1] gi|291074350|gb|EFE11714.1| ribonuclease HII [Clostridium sp. M62/1] gi|295091815|emb|CBK77922.1| Ribonuclease HII [Clostridium cf. saccharolyticum K10] Length = 223 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/177 (46%), Positives = 107/177 (60%), Gaps = 1/177 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDE GRG LAGPVV AA IL + +NDSKK++ K+REEL+ +I A+ + Sbjct: 32 ICGIDEAGRGPLAGPVVAAACILPTDCEILYLNDSKKLTEKRREELFVEIQEKAVSFGVG 91 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S ID+ NI +AT +A+ AVE L V P L D IP + +IKGD+ S+ Sbjct: 92 IVSPAVIDEINILQATYEAMRQAVEKLSVRPDVFLNDAVVIPGIDESRQVKIIKGDAKSV 151 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASI+AKVTRD +M + YP+YGF H GY T H ++E G IHR +F Sbjct: 152 SIAAASILAKVTRDHMMEEYDRLYPEYGFAKHKGYGTKAHLDAVREHGMCPIHRRSF 208 >gi|289578443|ref|YP_003477070.1| ribonuclease H [Thermoanaerobacter italicus Ab9] gi|289528156|gb|ADD02508.1| Ribonuclease H [Thermoanaerobacter italicus Ab9] Length = 242 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/188 (45%), Positives = 115/188 (61%), Gaps = 2/188 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + + N+ +AG+DE GRG L GPVV A +IL N INDSKK+S +KRE L E Sbjct: 49 ENQLYQLNLNFIAGVDEAGRGPLVGPVVAACVILPKNVFIPEINDSKKLSEEKREVLSEV 108 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI +I + IDK NI AT A+ A+ +Q L+D +IP+ + Sbjct: 109 IKKVAISYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQ-IEINQ 167 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 A+IKGDS S+SIAAASI+AKV RD++M+ HK YP Y F+ + GY T +H + +K+ GP Sbjct: 168 KAIIKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYGP 227 Query: 194 SCIHRLTF 201 IHR TF Sbjct: 228 CPIHRKTF 235 >gi|229545737|ref|ZP_04434462.1| ribonuclease HII [Enterococcus faecalis TX1322] gi|229549926|ref|ZP_04438651.1| ribonuclease HII [Enterococcus faecalis ATCC 29200] gi|255972709|ref|ZP_05423295.1| ribonuclease HII [Enterococcus faecalis T1] gi|256619148|ref|ZP_05475994.1| ribonuclease HII [Enterococcus faecalis ATCC 4200] gi|256762584|ref|ZP_05503164.1| ribonuclease HII [Enterococcus faecalis T3] gi|256853210|ref|ZP_05558580.1| ribonuclease HII [Enterococcus faecalis T8] gi|256959064|ref|ZP_05563235.1| ribonuclease HII [Enterococcus faecalis DS5] gi|256965040|ref|ZP_05569211.1| ribonuclease HII [Enterococcus faecalis HIP11704] gi|257079095|ref|ZP_05573456.1| ribonuclease HII [Enterococcus faecalis JH1] gi|257082466|ref|ZP_05576827.1| ribonuclease HII [Enterococcus faecalis E1Sol] gi|257086659|ref|ZP_05581020.1| ribonuclease HII [Enterococcus faecalis D6] gi|257416178|ref|ZP_05593172.1| ribonuclease HII [Enterococcus faecalis AR01/DG] gi|257419380|ref|ZP_05596374.1| ribonuclease HII [Enterococcus faecalis T11] gi|257422526|ref|ZP_05599516.1| ribonuclease HII [Enterococcus faecalis X98] gi|294781634|ref|ZP_06746970.1| ribonuclease HII [Enterococcus faecalis PC1.1] gi|300860321|ref|ZP_07106408.1| ribonuclease HII [Enterococcus faecalis TUSoD Ef11] gi|307270933|ref|ZP_07552216.1| ribonuclease HII [Enterococcus faecalis TX4248] gi|307273138|ref|ZP_07554384.1| ribonuclease HII [Enterococcus faecalis TX0855] gi|307274873|ref|ZP_07556036.1| ribonuclease HII [Enterococcus faecalis TX2134] gi|307289192|ref|ZP_07569148.1| ribonuclease HII [Enterococcus faecalis TX0109] gi|307291911|ref|ZP_07571780.1| ribonuclease HII [Enterococcus faecalis TX0411] gi|312899500|ref|ZP_07758830.1| ribonuclease HII [Enterococcus faecalis TX0470] gi|312951583|ref|ZP_07770479.1| ribonuclease HII [Enterococcus faecalis TX0102] gi|229304939|gb|EEN70935.1| ribonuclease HII [Enterococcus faecalis ATCC 29200] gi|229309187|gb|EEN75174.1| ribonuclease HII [Enterococcus faecalis TX1322] gi|255963727|gb|EET96203.1| ribonuclease HII [Enterococcus faecalis T1] gi|256598675|gb|EEU17851.1| ribonuclease HII [Enterococcus faecalis ATCC 4200] gi|256683835|gb|EEU23530.1| ribonuclease HII [Enterococcus faecalis T3] gi|256711669|gb|EEU26707.1| ribonuclease HII [Enterococcus faecalis T8] gi|256949560|gb|EEU66192.1| ribonuclease HII [Enterococcus faecalis DS5] gi|256955536|gb|EEU72168.1| ribonuclease HII [Enterococcus faecalis HIP11704] gi|256987125|gb|EEU74427.1| ribonuclease HII [Enterococcus faecalis JH1] gi|256990496|gb|EEU77798.1| ribonuclease HII [Enterococcus faecalis E1Sol] gi|256994689|gb|EEU81991.1| ribonuclease HII [Enterococcus faecalis D6] gi|257158006|gb|EEU87966.1| ribonuclease HII [Enterococcus faecalis ARO1/DG] gi|257161208|gb|EEU91168.1| ribonuclease HII [Enterococcus faecalis T11] gi|257164350|gb|EEU94310.1| ribonuclease HII [Enterococcus faecalis X98] gi|294451330|gb|EFG19796.1| ribonuclease HII [Enterococcus faecalis PC1.1] gi|300849360|gb|EFK77110.1| ribonuclease HII [Enterococcus faecalis TUSoD Ef11] gi|306496909|gb|EFM66457.1| ribonuclease HII [Enterococcus faecalis TX0411] gi|306499901|gb|EFM69262.1| ribonuclease HII [Enterococcus faecalis TX0109] gi|306508321|gb|EFM77428.1| ribonuclease HII [Enterococcus faecalis TX2134] gi|306510123|gb|EFM79147.1| ribonuclease HII [Enterococcus faecalis TX0855] gi|306512431|gb|EFM81080.1| ribonuclease HII [Enterococcus faecalis TX4248] gi|310630549|gb|EFQ13832.1| ribonuclease HII [Enterococcus faecalis TX0102] gi|311293370|gb|EFQ71926.1| ribonuclease HII [Enterococcus faecalis TX0470] gi|315027181|gb|EFT39113.1| ribonuclease HII [Enterococcus faecalis TX2137] gi|315029298|gb|EFT41230.1| ribonuclease HII [Enterococcus faecalis TX4000] gi|315034056|gb|EFT45988.1| ribonuclease HII [Enterococcus faecalis TX0017] gi|315037065|gb|EFT48997.1| ribonuclease HII [Enterococcus faecalis TX0027] gi|315147349|gb|EFT91365.1| ribonuclease HII [Enterococcus faecalis TX4244] gi|315152395|gb|EFT96411.1| ribonuclease HII [Enterococcus faecalis TX0031] gi|315155667|gb|EFT99683.1| ribonuclease HII [Enterococcus faecalis TX0043] gi|315158162|gb|EFU02179.1| ribonuclease HII [Enterococcus faecalis TX0312] gi|315164101|gb|EFU08118.1| ribonuclease HII [Enterococcus faecalis TX1302] gi|315169817|gb|EFU13834.1| ribonuclease HII [Enterococcus faecalis TX1342] gi|315172218|gb|EFU16235.1| ribonuclease HII [Enterococcus faecalis TX1346] gi|327535218|gb|AEA94052.1| ribonuclease H [Enterococcus faecalis OG1RF] Length = 255 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 89/183 (48%), Positives = 122/183 (66%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KKRE LY +I A+ I + Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLYNQIQEQAVAIGLG 133 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI++AT A+ A+++L P LID + D+P ++IKGD+ S+ Sbjct: 134 IADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLIDAMQL--DVPQPQESLIKGDARSI 191 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASIIAKVTRDRLM + YP YGF ++ GY T +H +++ G + IHR TF P+ Sbjct: 192 SIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKYGVTPIHRRTFAPI 251 Query: 205 RNL 207 +++ Sbjct: 252 KDM 254 >gi|295113049|emb|CBL31686.1| Ribonuclease HII [Enterococcus sp. 7L76] gi|315145132|gb|EFT89148.1| ribonuclease HII [Enterococcus faecalis TX2141] gi|315160534|gb|EFU04551.1| ribonuclease HII [Enterococcus faecalis TX0645] gi|315168949|gb|EFU12966.1| ribonuclease HII [Enterococcus faecalis TX1341] Length = 255 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 89/183 (48%), Positives = 122/183 (66%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KKRE LY +I A+ I + Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLYNQIQEQAVAIGLG 133 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI++AT A+ A+++L P LID + D+P ++IKGD+ S+ Sbjct: 134 IADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLIDAMQL--DVPQPQESLIKGDARSI 191 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASIIAKVTRDRLM + YP YGF ++ GY T +H +++ G + IHR TF P+ Sbjct: 192 SIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKYGVTPIHRRTFAPI 251 Query: 205 RNL 207 +++ Sbjct: 252 KDM 254 >gi|319401464|gb|EFV89674.1| ribonuclease HII [Staphylococcus epidermidis FRI909] Length = 256 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 79/183 (43%), Positives = 116/183 (63%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG LAGPVV A+IL+ N+ G++DSKK+S K R L + + + + Sbjct: 74 ICGIDEVGRGPLAGPVVACAVILEKNHHYIGLDDSKKVSPKNRARLNQNLKENVYQYAYG 133 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID+ NI++AT A+ A+ +L V P LID ++ D+P ++IKGD+ S+ Sbjct: 134 IASSVEIDELNIYRATQLAMLRAINHLDVTPTHLLIDAMTLDIDIP--QTSIIKGDAKSV 191 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASI+AK RD+ M+ K++PDYGFD + GY T +H + I G HR +F P+ Sbjct: 192 SIAAASIMAKEYRDQYMKQLSKQFPDYGFDKNAGYGTKQHLEAIDRVGFINEHRQSFEPI 251 Query: 205 RNL 207 +++ Sbjct: 252 KSM 254 >gi|300087868|ref|YP_003758390.1| ribonuclease H [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527601|gb|ADJ26069.1| Ribonuclease H [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 212 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 84/202 (41%), Positives = 117/202 (57%), Gaps = 7/202 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHK 66 P F E+ + +AG+DE GRGALAGPVV AA+IL + + DSK +S Sbjct: 8 PGFREESKLHGNGYRLIAGVDEAGRGALAGPVVAAAVILGRRRRSGWLKAVRDSKLLSPA 67 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 R+ LY IT +A+ + SH +ID+H I T A+ A+ENL P + LID ++ Sbjct: 68 NRDRLYGLITENALSWGVGVVSHHFIDRHGIVPGTRLAMALALENLDPSPEALLIDYLTL 127 Query: 126 PE-DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 P LP + +I GD++ +SIA AS+IAKVTRDRLM +YP Y F H GY TA+H Sbjct: 128 PAVTLPQKG--IIDGDAVCVSIACASVIAKVTRDRLMIGLDNRYPGYRFGRHKGYGTAEH 185 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 ++ GP +HR +F P++ Sbjct: 186 LDCLERLGPCSVHRRSFAPVQT 207 >gi|329893784|ref|ZP_08269872.1| Ribonuclease HII [gamma proteobacterium IMCC3088] gi|328923507|gb|EGG30821.1| Ribonuclease HII [gamma proteobacterium IMCC3088] Length = 193 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 81/190 (42%), Positives = 110/190 (57%), Gaps = 1/190 (0%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 M+ + VAG+DEVGRG L G VV AA+ILD NN G+ DSKK + K+ L E I Sbjct: 1 MLLAYEIGLVAGVDEVGRGPLVGNVVTAAVILDVNNPVEGLKDSKKCTEKQLHALNEDIQ 60 Query: 77 SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 + A+ + A+ ID+ NI AT+ A+ AV L + P L+DG +P L A Sbjct: 61 AKALCFAFGQATPAEIDELNILHATMLAMTRAVNGLSITPEHVLVDGNRVPRQLGVPATP 120 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 IKGD IAAASI+AKV RD M +++P+YGF H GYPT +H+Q + + G Sbjct: 121 CIKGDGTYACIAAASILAKVARDAQMVDLDRRHPEYGFARHKGYPTLEHRQALIDHGVLI 180 Query: 196 IHRLTFRPLR 205 HR +F P++ Sbjct: 181 EHRKSFGPVQ 190 >gi|298504765|gb|ADI83488.1| ribonuclease HII [Geobacter sulfurreducens KN400] Length = 211 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 95/201 (47%), Positives = 123/201 (61%), Gaps = 2/201 (0%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 P+ ++ E+ + +AGIDE GRG LAGPVV AA+IL G++DSKK++ Sbjct: 10 PQPAVWDFESRAARRGYRTIAGIDEAGRGPLAGPVVAAAVILPFGTDLPGVDDSKKLTPA 69 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R++L+ I +A+ I + A H+ ID+ NI +ATL A+ AVE L P L+DG S Sbjct: 70 RRDDLFTLIQGTALAIGVGVADHKVIDRINILQATLAAMREAVECLTDPPDYLLVDGIS- 128 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P LP + KGDS S+SIAAASIIAKVTRDRLM + YP YGF H GY +A H Sbjct: 129 PVPLPVAQQTIKKGDSASISIAAASIIAKVTRDRLMAEYDQLYPGYGFAEHKGYGSASHM 188 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 I GPS IHR TFR +R Sbjct: 189 AAIAALGPSPIHRTTFRGVRE 209 >gi|187931769|ref|YP_001891754.1| ribonuclease HII [Francisella tularensis subsp. mediasiatica FSC147] gi|238691569|sp|B2SGW7|RNH2_FRATM RecName: Full=Ribonuclease HII; Short=RNase HII gi|187712678|gb|ACD30975.1| ribonuclease HII [Francisella tularensis subsp. mediasiatica FSC147] Length = 187 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 79/183 (43%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84 + GIDE GRG L+GPVV A +ILD + I G+ DSKK++ KKR+ LY++I T + +I Sbjct: 3 ILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYTIV 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + Q ID+ NI +ATL A++ NL+ L+DG +P + + A++KGDS + Sbjct: 63 EINPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSKII 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD + + YP YGF H GYPT +H + IK+ G IHR +++P+ Sbjct: 122 EISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYKPV 181 Query: 205 RNL 207 + L Sbjct: 182 QVL 184 >gi|312903393|ref|ZP_07762573.1| ribonuclease HII [Enterococcus faecalis TX0635] gi|310633269|gb|EFQ16552.1| ribonuclease HII [Enterococcus faecalis TX0635] gi|315577621|gb|EFU89812.1| ribonuclease HII [Enterococcus faecalis TX0630] Length = 255 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 89/183 (48%), Positives = 122/183 (66%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KKRE LY +I A+ I + Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLYNQIQEQAVAIGLG 133 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI++AT A+ A+++L P LID + D+P ++IKGD+ S+ Sbjct: 134 IADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLIDAMQL--DVPQPQESLIKGDARSI 191 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASIIAKVTRDRLM + YP YGF ++ GY T +H +++ G + IHR TF P+ Sbjct: 192 SIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKYGVTPIHRRTFAPI 251 Query: 205 RNL 207 +++ Sbjct: 252 KDM 254 >gi|255975761|ref|ZP_05426347.1| ribonuclease HII [Enterococcus faecalis T2] gi|307277980|ref|ZP_07559064.1| ribonuclease HII [Enterococcus faecalis TX0860] gi|255968633|gb|EET99255.1| ribonuclease HII [Enterococcus faecalis T2] gi|306505377|gb|EFM74563.1| ribonuclease HII [Enterococcus faecalis TX0860] Length = 255 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 89/183 (48%), Positives = 122/183 (66%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KKRE LY +I A+ I + Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLYNQIQEQAVAIGLG 133 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI++AT A+ A+++L P LID + D+P ++IKGD+ S+ Sbjct: 134 IADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLIDAMQL--DVPQPQESLIKGDARSI 191 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASIIAKVTRDRLM + YP YGF ++ GY T +H +++ G + IHR TF P+ Sbjct: 192 SIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKYGVTPIHRRTFAPI 251 Query: 205 RNL 207 +++ Sbjct: 252 KDM 254 >gi|307294539|ref|ZP_07574381.1| Ribonuclease H [Sphingobium chlorophenolicum L-1] gi|306879013|gb|EFN10231.1| Ribonuclease H [Sphingobium chlorophenolicum L-1] Length = 199 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/184 (44%), Positives = 115/184 (62%), Gaps = 2/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DE GRG LAGPVV AA+IL + P G+NDSK++S +R L +I + A+ + Sbjct: 15 VAGVDEAGRGPLAGPVVAAAVILRREDCPEGLNDSKQLSAARRAVLEGEIKARALCWGLG 74 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID NI AT+ A+ AVE L L+DG P+ + AV++GD+ L Sbjct: 75 VASVEEIDSINILWATMLAMTRAVEALTHDCAHVLVDGNRCPQ-WRWASTAVVEGDAKCL 133 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASI+AK RDR+M A +P YG++S+ GY + KH ++E GP+ +HR +F P+ Sbjct: 134 SIAAASILAKEARDRMMVEAAAAHPHYGWESNKGYGSPKHLAALREHGPTPLHRRSFAPV 193 Query: 205 RNLS 208 LS Sbjct: 194 AQLS 197 >gi|94988631|ref|YP_596732.1| ribonuclease HII [Streptococcus pyogenes MGAS9429] gi|94992454|ref|YP_600553.1| ribonuclease HII [Streptococcus pyogenes MGAS2096] gi|166226658|sp|Q1JBP9|RNH2_STRPB RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226659|sp|Q1JLN1|RNH2_STRPC RecName: Full=Ribonuclease HII; Short=RNase HII gi|94542139|gb|ABF32188.1| ribonuclease HII [Streptococcus pyogenes MGAS9429] gi|94545962|gb|ABF36009.1| Ribonuclease HII [Streptococcus pyogenes MGAS2096] Length = 263 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/197 (42%), Positives = 121/197 (61%), Gaps = 6/197 (3%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + +K +AGIDEVGRG LAGPVV A +IL G+NDSKKI K E +Y+ Sbjct: 62 EKALYKKGYQAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKSKHETIYQA 121 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLP 130 + A+ I I +Q ID+ NI++AT A+ A++ L+ P LID ++ D+ Sbjct: 122 VKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLESQLTQPDYLLIDAMTL--DIA 179 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +++KGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T +H Q +K Sbjct: 180 ISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQGLKA 239 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 240 YGITPIHRKSFEPVKSM 256 >gi|237740891|ref|ZP_04571372.1| ribonuclease HII [Fusobacterium sp. 4_1_13] gi|256846832|ref|ZP_05552287.1| ribonuclease HII [Fusobacterium sp. 3_1_36A2] gi|229431188|gb|EEO41400.1| ribonuclease HII [Fusobacterium sp. 4_1_13] gi|256717798|gb|EEU31356.1| ribonuclease HII [Fusobacterium sp. 3_1_36A2] Length = 214 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 84/189 (44%), Positives = 118/189 (62%), Gaps = 8/189 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84 V G+DE GRG LAGPVV AA+IL + INDSKK++ K RE+LY+ I + +++ Sbjct: 19 VIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSKKLTEKTREKLYDIIMKNFYVAVG 78 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPR-----SALIDGRSIPEDLPCQAFAVIKG 139 ++ + IDK NI A A+ A+++L+ I + + L+DG ++ + ++KG Sbjct: 79 VSTVEEIDKLNILNADFLAMRRALKDLENIKKDKKEYTVLVDGNLKIKEYTGKQLPIVKG 138 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHR 198 D+ SLSIAAASIIAKVTRDRLM+ YPDY F+ H GY T H +VIK+KG +HR Sbjct: 139 DAKSLSIAAASIIAKVTRDRLMKDLASVYPDYHFEKHKGYGTKVHIEVIKDKGAIEGVHR 198 Query: 199 LTF-RPLRN 206 F R + N Sbjct: 199 KVFLRKINN 207 >gi|186684020|ref|YP_001867216.1| ribonuclease HII [Nostoc punctiforme PCC 73102] gi|186466472|gb|ACC82273.1| ribonuclease HII/HIII [Nostoc punctiforme PCC 73102] Length = 218 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 85/183 (46%), Positives = 114/183 (62%), Gaps = 5/183 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI- 80 VAG+DEVGRGAL GPVV AA+IL + +P I DSKK+S +R +L ++I + AI Sbjct: 27 VAGVDEVGRGALFGPVVAAAVILPDHALPILIAAKIKDSKKLSSSRRTQLAQQICALAID 86 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I AS IDK NI +ATL A+ AV L+V P L+DG +DL +IKGD Sbjct: 87 WKIGFASTAEIDKINILQATLLAMKRAVLKLKVQPAICLVDGNQSIKDLLLPQQTIIKGD 146 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 SL+IA+ASI+AKV RD L+ KYP Y + + GY + +H +++ GPS +HR + Sbjct: 147 ERSLAIASASIVAKVWRDDLVLRLALKYPMYNLERNKGYGSQRHLLALQQYGPSPLHRQS 206 Query: 201 FRP 203 FRP Sbjct: 207 FRP 209 >gi|296313291|ref|ZP_06863232.1| ribonuclease HII [Neisseria polysaccharea ATCC 43768] gi|296840213|gb|EFH24151.1| ribonuclease HII [Neisseria polysaccharea ATCC 43768] Length = 194 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 84/184 (45%), Positives = 112/184 (60%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83 AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L E I S A+ I Sbjct: 5 TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKSQAVAWHI 63 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 ++A + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS Sbjct: 64 AAAGPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKI 123 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183 Query: 204 LRNL 207 +RNL Sbjct: 184 VRNL 187 >gi|108762969|ref|YP_630793.1| ribonuclease HII [Myxococcus xanthus DK 1622] gi|123247896|sp|Q1D980|RNH2_MYXXD RecName: Full=Ribonuclease HII; Short=RNase HII gi|108466849|gb|ABF92034.1| ribonuclease HII [Myxococcus xanthus DK 1622] Length = 293 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 91/201 (45%), Positives = 121/201 (60%), Gaps = 5/201 (2%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI-SHKK 67 R E + E+ +AG+DE G LAGPVV AA +L G++DSKKI +K Sbjct: 66 RKLLRFETELWEQGHTHIAGVDEAGMAPLAGPVVAAAAVLPKGFRLKGLDDSKKILDAEK 125 Query: 68 REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE L E I A+ ++ A + ID+ NI+ A L A+ AVE L V P L+D R++P Sbjct: 126 RESLAEAIKRDAVAWAVGRAEVEEIDRINIYHAGLLAMRRAVEGLSVKPDHLLVDARTVP 185 Query: 127 E-DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 E +P + +IKGD++SLSIAAASI+AK TRDR M +YP YG +H GYPT H Sbjct: 186 ECSVPQKG--IIKGDALSLSIAAASILAKTTRDRWMAELDDQYPGYGLAAHKGYPTPHHL 243 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 QV++EKG IHR +F P+R Sbjct: 244 QVLREKGVLPIHRRSFAPVRE 264 >gi|294340693|emb|CAZ89085.1| Ribonuclease HII (RNase HII) [Thiomonas sp. 3As] Length = 214 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 84/184 (45%), Positives = 119/184 (64%), Gaps = 4/184 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG DEVGRG AGPVV AA++LDP + G+ DSK +S ++REEL I + ++ SI+ Sbjct: 18 IAGCDEVGRGPWAGPVVAAAVVLDPAHPIAGLADSKLLSARRREELDAHIRAYSLAWSIA 77 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 +S + ID+ NI +ATL A+ AV L L+DG P+ +PC+A ++ GD++ Sbjct: 78 ESSVEEIDQRNILQATLLAMQRAVAALPCKIDLLLVDGNQTPQVAMPCRA--IVGGDAVQ 135 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASIIAKV RDRLM ++YP YGF+ H GY TA H+ + GP +HR +F P Sbjct: 136 PAISAASIIAKVYRDRLMTELAQRYPGYGFERHSGYGTAAHRAALLTLGPCAVHRRSFAP 195 Query: 204 LRNL 207 +R L Sbjct: 196 IRRL 199 >gi|261366997|ref|ZP_05979880.1| ribonuclease HII [Subdoligranulum variabile DSM 15176] gi|282571115|gb|EFB76650.1| ribonuclease HII [Subdoligranulum variabile DSM 15176] Length = 201 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 87/177 (49%), Positives = 112/177 (63%), Gaps = 1/177 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 V G+DE GRG L GPV AA+ILDP++ GINDSKK+S K+RE L+E+IT A+ I Sbjct: 15 VCGVDEAGRGPLCGPVCCAAVILDPDDPIEGINDSKKLSEKRREALFEEITQRAVAYQIV 74 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S Q ID+ NI AT+D + AV L P LIDG P DL A AV+KGD+ S Sbjct: 75 FISPQEIDERNILWATMDGMSQAVAGLNPQPEYVLIDGNRCPPDLSHPAKAVVKGDATSA 134 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASI+AKV+RDR M+ +++P Y H GYPT H ++I + G +R +F Sbjct: 135 SIAAASILAKVSRDRYMKELDQQFPQYQLAKHKGYPTKLHYELIAQYGIQPFYRRSF 191 >gi|315127144|ref|YP_004069147.1| RNAse HII [Pseudoalteromonas sp. SM9913] gi|315015658|gb|ADT68996.1| RNAse HII [Pseudoalteromonas sp. SM9913] Length = 199 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 81/187 (43%), Positives = 114/187 (60%), Gaps = 2/187 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81 N+ +AG+DEVGRG L G VV AA+IL+P G+ DSKK++ KKR+ L +I A+ Sbjct: 7 NVTLIAGVDEVGRGPLVGDVVTAAVILNPAKPIAGLADSKKLTDKKRQLLAIEIKEKALC 66 Query: 82 -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 +I S ID+ NI +AT+ A+ AVE L +P +DG +P+ L A AV+KGD Sbjct: 67 YAIGRCSPSEIDELNILQATMLAMSRAVEALSTVPEFVFVDGNRLPK-LAMPAQAVVKGD 125 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+ I+AASI+AKV RD M +YP YGF H GYPT H +++ G HR + Sbjct: 126 SLVAEISAASILAKVARDDEMIELDARYPQYGFAGHKGYPTKAHFAALEQYGAIDEHRKS 185 Query: 201 FRPLRNL 207 F+P++ + Sbjct: 186 FKPVQRV 192 >gi|119471147|ref|ZP_01613679.1| RNAse HII [Alteromonadales bacterium TW-7] gi|119445803|gb|EAW27085.1| RNAse HII [Alteromonadales bacterium TW-7] Length = 201 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 82/187 (43%), Positives = 112/187 (59%), Gaps = 2/187 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81 N+ +AG+DEVGRG L G VV AA+ILDP G+ DSKK++ KKR+ L +I +A+ Sbjct: 7 NVTLIAGVDEVGRGPLVGDVVTAAVILDPTKPIAGLADSKKLTDKKRQALATEIKENALC 66 Query: 82 -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 + S ID NI AT+ A+ AVE L P IDG +P+ L A AV+KGD Sbjct: 67 YAYGRCSPSEIDDLNILHATMLAMSRAVEGLSTQPEFVFIDGNRLPK-LAMPAQAVVKGD 125 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+ I+AASI+AKV RD M K++P YGF H GYPT H +++ G HR + Sbjct: 126 SLVAEISAASILAKVARDDEMLELDKRHPQYGFAGHKGYPTKAHFAALEQYGAIDEHRKS 185 Query: 201 FRPLRNL 207 F+P++ + Sbjct: 186 FKPVQRV 192 >gi|83945341|ref|ZP_00957689.1| ribonuclease HII [Oceanicaulis alexandrii HTCC2633] gi|83851175|gb|EAP89032.1| ribonuclease HII [Oceanicaulis alexandrii HTCC2633] Length = 202 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 77/182 (42%), Positives = 107/182 (58%), Gaps = 1/182 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84 +AG+DE GRG LAGPVV AA+IL N ++DSKK+S K+R L I + A + + Sbjct: 10 IAGVDEAGRGPLAGPVVCAAVILPANFSALDQLDDSKKLSEKRRAALSAIIRAEARVGVG 69 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ N+ AT+ A+ AVE L VIP LIDG +P L A A++ GD Sbjct: 70 IAEPVEIDRLNVLHATMAAMVRAVEGLGVIPDEILIDGNRVPAGLSAPARAIVGGDGREA 129 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I AASIIAK RD++M A ++ YG H GYP+ H+ ++ G + IHRL++ P+ Sbjct: 130 CIGAASIIAKTLRDQIMIEAENRFSGYGLAGHKGYPSPSHKAALENLGAAPIHRLSYAPV 189 Query: 205 RN 206 + Sbjct: 190 QQ 191 >gi|314933425|ref|ZP_07840790.1| ribonuclease HII [Staphylococcus caprae C87] gi|313653575|gb|EFS17332.1| ribonuclease HII [Staphylococcus caprae C87] Length = 256 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 81/198 (40%), Positives = 123/198 (62%), Gaps = 4/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 H+E E ++ N + G+DEVGRG LAGPVV A+IL+ ++ G+NDSKK+ K+R Sbjct: 60 HYENE-ILNHNNEALICGVDEVGRGPLAGPVVACAVILNRDHHYLGLNDSKKVPAKQRSI 118 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L EK+ + + + A+ Q ID NI++AT A+ A++ L + P LID + ++ Sbjct: 119 LNEKLKDNVMSYAYGIATPQEIDDLNIYRATQVAMQRAIDQLSIKPTHLLIDAMKLDNNI 178 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P ++IKGD+ S+SIAAASI+AK RD M+ +YP+YGF+ +VGY T +H + I Sbjct: 179 P--QTSIIKGDAKSVSIAAASIMAKEYRDDYMKELANEYPNYGFEKNVGYGTKQHLEAID 236 Query: 190 EKGPSCIHRLTFRPLRNL 207 G HR TF P++++ Sbjct: 237 TFGVIKEHRQTFEPIKSM 254 >gi|322516896|ref|ZP_08069794.1| ribonuclease HII [Streptococcus vestibularis ATCC 49124] gi|322124552|gb|EFX96031.1| ribonuclease HII [Streptococcus vestibularis ATCC 49124] Length = 256 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 6 IPERPHFEL----EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61 I E E+ E ++ + + +AG+DEVGRG LAGPVV AA+IL G+NDSK Sbjct: 48 IAEEERLEMMLSYEKVLYAQGVELIAGVDEVGRGPLAGPVVAAAVILPKFCKIKGLNDSK 107 Query: 62 KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 KI K E +Y+++ A+ + + + ID NI++AT A+ A+E L P LI Sbjct: 108 KIPKSKHEAIYKQVMKEAVAVGVGIKDNHVIDDVNIYEATKLAMAEAIEKLSPKPEHLLI 167 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 D ++ DLP ++IKGD+ SLSIAAASI+AKVTRD++M +++P Y F + GY Sbjct: 168 DAMTL--DLPIGQTSIIKGDANSLSIAAASIVAKVTRDKMMADYDQEFPGYAFAKNAGYG 225 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNL 207 T H + G + IHR +F P++++ Sbjct: 226 TKDHLSGLDNFGVTPIHRRSFEPIKSI 252 >gi|192358895|ref|YP_001981622.1| ribonuclease HII [Cellvibrio japonicus Ueda107] gi|190685060|gb|ACE82738.1| ribonuclease HII [Cellvibrio japonicus Ueda107] Length = 204 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 86/181 (47%), Positives = 119/181 (65%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG DEVGRG LAG VV AA+ILDP G++DSKK++ KKRE+L+++I + A+ I+ Sbjct: 16 LAGCDEVGRGPLAGDVVAAAVILDPGQSIIGLDDSKKLTEKKREQLFDEIRAKALSWCIA 75 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID+ NI +A+L A+ AV+ L + P L+DG +P+ A AV+KGDS Sbjct: 76 RASVEEIDRLNILQASLLAMTRAVQGLAIQPEHVLVDGNKLPK-WHYSAEAVVKGDSRVA 134 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKVTRDR M YP YGF H GYPT H ++ G S IHR ++ P+ Sbjct: 135 AISAASILAKVTRDREMVEMDSYYPGYGFAGHKGYPTKVHLDALERLGVSPIHRSSYAPV 194 Query: 205 R 205 + Sbjct: 195 K 195 >gi|119898186|ref|YP_933399.1| ribonuclease HII [Azoarcus sp. BH72] gi|166225166|sp|A1K6Q7|RNH2_AZOSB RecName: Full=Ribonuclease HII; Short=RNase HII gi|119670599|emb|CAL94512.1| Ribonuclease H [Azoarcus sp. BH72] Length = 204 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 79/183 (43%), Positives = 110/183 (60%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 + G+DE GRG L GPVV AA+ILDP G+ DSKK++ + R+ L I A+ +++ Sbjct: 10 ICGVDEAGRGPLCGPVVAAAVILDPARPIDGLADSKKLTERARDRLAPLIRERALAWAVA 69 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID+ NI AT+ A+ AV L V+P LIDG P L A AV+ GD+ Sbjct: 70 EASVEEIDRLNILHATMLAMQRAVSALSVLPGEVLIDGNRCPT-LAVPARAVVGGDASEP 128 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AK RD M+ H++YP YG H GYPTA H ++ G + +R +F P+ Sbjct: 129 AISAASILAKTVRDAGMKALHEQYPHYGLADHKGYPTAGHLAALRRHGIADFYRRSFGPV 188 Query: 205 RNL 207 R L Sbjct: 189 REL 191 >gi|302878990|ref|YP_003847554.1| Ribonuclease H [Gallionella capsiferriformans ES-2] gi|302581779|gb|ADL55790.1| Ribonuclease H [Gallionella capsiferriformans ES-2] Length = 204 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 89/194 (45%), Positives = 125/194 (64%), Gaps = 2/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + ++ + G+DE GRG LAGPV AA+ILDPNN G+NDSKK+S K+RE+L Sbjct: 8 EMALNDEKFTLICGVDEAGRGPLAGPVSAAAVILDPNNPIPGLNDSKKLSEKQREKLASL 67 Query: 75 ITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A+ +++ A+ + ID+ NI +ATL A+ AV+ LQV P+ L+DG P D + Sbjct: 68 IRECALAWAVAYATVEEIDRLNILQATLLAMRRAVQALQVQPQLVLVDGLYCP-DTGIAS 126 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 A++KGDS +I+AASI+AK RD LM ++YP YGF H GYPTA H ++ G Sbjct: 127 EAIVKGDSKVAAISAASILAKTDRDALMLQLDEQYPHYGFALHKGYPTAAHLAALQAHGV 186 Query: 194 SCIHRLTFRPLRNL 207 S +HR +F+P+R L Sbjct: 187 SVVHRRSFKPVRVL 200 >gi|194467936|ref|ZP_03073922.1| Ribonuclease H [Lactobacillus reuteri 100-23] gi|194452789|gb|EDX41687.1| Ribonuclease H [Lactobacillus reuteri 100-23] Length = 256 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 82/194 (42%), Positives = 117/194 (60%), Gaps = 3/194 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F+ E EK VAG+DEVGRG LAGPVV A+IL+ + G+ DSK+++ +RE L Sbjct: 60 FKYEKYYWEKGCQYVAGMDEVGRGPLAGPVVTCAVILNADFDLIGVTDSKQLTRHERENL 119 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y +I A+ +SI+ ID+ NI+ AT DA+ AV +L P ++D + D+P Sbjct: 120 YLRIVDEAVEVSIAVNDAPVIDQMNIYAATQDAMIRAVNHLHHRPDHLIVDAVPLAIDIP 179 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD S+S+AAASI+AK RD LMR YP YGF ++GY T +H +++ Sbjct: 180 --QTTLIKGDQKSISVAAASIVAKEYRDHLMRDYDYVYPGYGFAQNMGYGTKEHLVGLEK 237 Query: 191 KGPSCIHRLTFRPL 204 G + IHR +F P+ Sbjct: 238 MGATPIHRRSFNPV 251 >gi|77360940|ref|YP_340515.1| RNAse HII [Pseudoalteromonas haloplanktis TAC125] gi|97189191|sp|Q3IIW9|RNH2_PSEHT RecName: Full=Ribonuclease HII; Short=RNase HII gi|76875851|emb|CAI87072.1| RNAse HII [Pseudoalteromonas haloplanktis TAC125] Length = 200 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 81/188 (43%), Positives = 115/188 (61%), Gaps = 4/188 (2%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81 N+ +AG+DEVGRG L G VV AA+ILDP+ G+ DSKK++ KKR+ L +I A+ Sbjct: 7 NVALIAGVDEVGRGPLVGDVVTAAVILDPSKPIAGLADSKKLTDKKRQALAIEIQEKALC 66 Query: 82 -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKG 139 + S ID+ NI AT+ A+ AVE L P IDG +P+ +P QA ++KG Sbjct: 67 YAYGRCSPTEIDELNILHATMLAMTRAVEGLSTQPEFVFIDGNRLPKLTMPAQA--IVKG 124 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS+ I+AASI+AKV RD M K++P+YGF H GYPT H +++ G HR Sbjct: 125 DSLVAEISAASILAKVARDNEMVELDKRHPEYGFAGHKGYPTKAHFAALEQYGAIKEHRK 184 Query: 200 TFRPLRNL 207 +F+P++ + Sbjct: 185 SFKPVQRV 192 >gi|320354477|ref|YP_004195816.1| RNase HII [Desulfobulbus propionicus DSM 2032] gi|320122979|gb|ADW18525.1| RNase HII [Desulfobulbus propionicus DSM 2032] Length = 224 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 92/214 (42%), Positives = 131/214 (61%), Gaps = 16/214 (7%) Query: 1 MFCNSIPERPH---FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPF 55 +F + +P PH F E ++ + VAG+DE GRG LAGPVV A +IL D + P+ Sbjct: 6 LFADLLPFSPHTDTFYFERQLQRQGFARVAGVDEAGRGPLAGPVVAACVILPADGDFTPY 65 Query: 56 GINDSKKISHKKREELYEKI-TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI 114 DSK ++ ++RE L+E + T+ A I + AS + I++ NI +A+L A+ A+E + Sbjct: 66 --VDSKTLTRRQRERLFELLSTNGARIGVGEASPREIEQVNILQASLLAMKRAMEACGQV 123 Query: 115 PRSA-----LIDGR-SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 P L+DGR +P +P ++KG+S S SIAAASI+AKVTRDR+M AH + Sbjct: 124 PPGGVPDFLLVDGRFEVP--VPVGQRTLVKGESKSASIAAASIVAKVTRDRMMADAHALF 181 Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 P YGFD H GYPT H++ I+ GP +HR TFR Sbjct: 182 PQYGFDRHQGYPTKAHREAIRNHGPCPLHRRTFR 215 >gi|126641188|ref|YP_001084172.1| ribonuclease HII [Acinetobacter baumannii ATCC 17978] Length = 174 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 77/170 (45%), Positives = 110/170 (64%), Gaps = 5/170 (2%) Query: 39 GPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIH 97 G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A+ SI+ A+H ID+ NI Sbjct: 2 GSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWSIAEATHAEIDELNIL 61 Query: 98 KATLDAIYHAVENLQVIPRSALIDGRSIPEDL--PCQAFAVIKGDSISLSIAAASIIAKV 155 +AT A+ AVE L+ P+ ++DG IP+ + PC+A ++ GD+ I+AASI+AKV Sbjct: 62 QATFLAMQRAVEGLKTQPQKVIVDGNQIPKGIIIPCEA--IVGGDASHAEISAASILAKV 119 Query: 156 TRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 TRDR M ++YP +GF H GYPT H + I G HR ++ P++ Sbjct: 120 TRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYAPVK 169 >gi|39995755|ref|NP_951706.1| ribonuclease HII [Geobacter sulfurreducens PCA] gi|81703214|sp|Q74FG0|RNH2_GEOSL RecName: Full=Ribonuclease HII; Short=RNase HII gi|39982519|gb|AAR33979.1| ribonuclease HII [Geobacter sulfurreducens PCA] Length = 217 Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 95/201 (47%), Positives = 123/201 (61%), Gaps = 2/201 (0%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 P+ ++ E+ + +AGIDE GRG LAGPVV AA+IL G++DSKK++ Sbjct: 10 PQPAVWDFESRAARRGYRTIAGIDEAGRGPLAGPVVAAAVILPFGTDLPGVDDSKKLTPA 69 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R++L+ I +A+ I + A H+ ID+ NI +ATL A+ AVE L P L+DG S Sbjct: 70 RRDDLFTLIQGTALAIGVGVADHKVIDRINILQATLAAMREAVECLTDPPDYLLVDGIS- 128 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P LP + KGDS S+SIAAASIIAKVTRDRLM + YP YGF H GY +A H Sbjct: 129 PVPLPVAQQTIKKGDSASISIAAASIIAKVTRDRLMAEYDQLYPGYGFAEHKGYGSASHM 188 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 I GPS IHR TFR +R Sbjct: 189 AAIAALGPSPIHRTTFRGVRE 209 >gi|237745358|ref|ZP_04575839.1| ribonuclease HII [Fusobacterium sp. 7_1] gi|229432587|gb|EEO42799.1| ribonuclease HII [Fusobacterium sp. 7_1] Length = 214 Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 82/189 (43%), Positives = 116/189 (61%), Gaps = 8/189 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84 V G+DE GRG LAGPVV AA+IL + INDSKK++ KKRE+LY+ I + +++ Sbjct: 19 VIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSKKLTEKKREKLYDIIMKNFYVAVG 78 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPCQAFAVIKG 139 ++ + IDK NI A A+ A+++L+ I + L+DG ++ + ++KG Sbjct: 79 ISTVEEIDKMNILNADFLAMRRALKDLENIKKDKKEYIVLVDGNLKIKEYSGKQLPIVKG 138 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHR 198 D+ SLS+AAASIIAKVTRDR M+ YPDY F+ H GY T H + IK+KG +HR Sbjct: 139 DAKSLSVAAASIIAKVTRDRFMKDLANIYPDYSFEKHKGYGTKAHIEAIKDKGAIEGVHR 198 Query: 199 LTF-RPLRN 206 F R + N Sbjct: 199 KVFLRKINN 207 >gi|253581825|ref|ZP_04859049.1| ribonuclease HII [Fusobacterium varium ATCC 27725] gi|251836174|gb|EES64711.1| ribonuclease HII [Fusobacterium varium ATCC 27725] Length = 239 Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 86/181 (47%), Positives = 111/181 (61%), Gaps = 4/181 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + G+DE GRG LAGPVV AA+ I D N+ INDSK++S KKRE+LY+ + I I Sbjct: 53 EIIGVDEAGRGPLAGPVVAAAVKIKDYNSELDEINDSKQLSEKKREKLYDVVKEHFYIGI 112 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS---ALIDGRSIPEDLPCQAFAVIKGD 140 A + ID+ NI AT A+ A+ENL+ L+DG + + VIKGD Sbjct: 113 GVADSKEIDEINILNATFLAMRRALENLKKECSGEYLVLVDGNFKIREYKGRQEPVIKGD 172 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 SLSIAAASIIAKVTRDR+MR KYP YGF+ H GY T +H+ I++ G +HR + Sbjct: 173 GKSLSIAAASIIAKVTRDRIMREEAIKYPLYGFEKHKGYGTKQHRDAIEKYGVLEMHRKS 232 Query: 201 F 201 F Sbjct: 233 F 233 >gi|291614100|ref|YP_003524257.1| ribonuclease H [Sideroxydans lithotrophicus ES-1] gi|291584212|gb|ADE11870.1| Ribonuclease H [Sideroxydans lithotrophicus ES-1] Length = 191 Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 84/184 (45%), Positives = 119/184 (64%), Gaps = 4/184 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 + G+DE GRG LAGPV AA+ILD + G+ DSKK+S ++R++L I A+ +++ Sbjct: 7 ICGVDEAGRGPLAGPVSAAAVILDKSRPIEGLADSKKLSERQRDQLAPLIRERALAWAVA 66 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 A + ID+ NI +ATL A+ AV L P+ L+DG P+ +P QA ++KGDS Sbjct: 67 YAEVEEIDRLNILQATLLAMKRAVLALHTQPQQVLVDGLYCPQTGIPSQA--IVKGDSKV 124 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AK RD LM H++YP YGFD H GYPTA H +++ G S +HR +FRP Sbjct: 125 AAISAASILAKTARDELMLKMHEQYPQYGFDGHKGYPTAAHLAALRQHGVSDVHRRSFRP 184 Query: 204 LRNL 207 +R L Sbjct: 185 VREL 188 >gi|322411764|gb|EFY02672.1| ribonuclease HII [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 256 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 87/204 (42%), Positives = 127/204 (62%), Gaps = 12/204 (5%) Query: 14 LEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LEAM+ EK ++ +AGIDEVGRG LAGPVV A +IL + G+NDSKKI K Sbjct: 55 LEAMLSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHFKIKGLNDSKKIPKAK 114 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR 123 E +Y+ + A+ I I +Q ID+ NI++AT A+ A++ L+ P LID Sbjct: 115 HETIYQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAM 174 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 ++ +P Q+ +IKGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T + Sbjct: 175 TLDIAIPQQS--IIKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKE 232 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H ++ G + IHR +F P++++ Sbjct: 233 HLDGLRTHGITPIHRKSFEPIKSM 256 >gi|71910696|ref|YP_282246.1| ribonuclease HII [Streptococcus pyogenes MGAS5005] gi|71853478|gb|AAZ51501.1| ribonuclease HII [Streptococcus pyogenes MGAS5005] Length = 263 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 83/197 (42%), Positives = 121/197 (61%), Gaps = 6/197 (3%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + +K +AGIDEVGRG LAGPVV A +IL G+NDSKKI K E +Y+ Sbjct: 62 EKALYKKGYKAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKAKHETIYQA 121 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLP 130 + A+ I I +Q ID+ NI++AT A+ A++ L+ P LID ++ D+ Sbjct: 122 VKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTL--DIA 179 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +++KGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T +H Q +K Sbjct: 180 ISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQGLKA 239 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 240 YGITPIHRKSFEPVKSM 256 >gi|254429946|ref|ZP_05043653.1| ribonuclease HII [Alcanivorax sp. DG881] gi|196196115|gb|EDX91074.1| ribonuclease HII [Alcanivorax sp. DG881] Length = 220 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 86/180 (47%), Positives = 114/180 (63%), Gaps = 2/180 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA++LDP + G+ DSKKIS KKR L +I S A+ ++ Sbjct: 32 VAGVDEVGRGPLVGAVVTAAVVLDPQHPIAGLADSKKISEKKRLALEAEIKSHALGWALG 91 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + ++ L+DG +P LPC + AV+KGD Sbjct: 92 RAEPAEIDELNILHATMLAMQRAVAGLPMAAQAVLVDGNRVPA-LPCPSQAVVKGDGRVP 150 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKV RDR M H +YP YGFD H GYPTA H +++ G HR +F P+ Sbjct: 151 AISAASILAKVARDREMHALHARYPQYGFDRHKGYPTAVHMAALEQHGALAEHRRSFGPV 210 >gi|71279195|ref|YP_268311.1| ribonuclease HII [Colwellia psychrerythraea 34H] gi|97182381|sp|Q485F4|RNH2_COLP3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|71144935|gb|AAZ25408.1| ribonuclease HII [Colwellia psychrerythraea 34H] Length = 217 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 88/193 (45%), Positives = 113/193 (58%), Gaps = 12/193 (6%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L +I AI S Sbjct: 16 YCIAGVDEVGRGPLVGDVVTAAVILDPDNPIEGLMDSKKLSEKKRNLLSLEIKEKAISWS 75 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-----------EDLPC 131 + AS Q ID NI AT+ A+ AVE L V P L+DG P ++L Sbjct: 76 LGRASPQEIDTLNILHATMLAMQRAVEGLNVEPDFVLVDGNRCPTFLCNASESNQQNLKI 135 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + AV+KGD+ I+AASIIAKV RD M K +P+YGF H GYPT H + I E Sbjct: 136 ASQAVVKGDARVTEISAASIIAKVARDNEMIALDKLHPEYGFAKHKGYPTKLHLEKIIEH 195 Query: 192 GPSCIHRLTFRPL 204 G +R +F+P+ Sbjct: 196 GVLDCYRQSFKPV 208 >gi|284102975|ref|ZP_06386058.1| Ribonuclease HII [Candidatus Poribacteria sp. WGA-A3] gi|283830303|gb|EFC34542.1| Ribonuclease HII [Candidatus Poribacteria sp. WGA-A3] Length = 216 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 86/198 (43%), Positives = 119/198 (60%), Gaps = 2/198 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P +LE R + VAG+DE GRG LAGPVV AA+I+ ++DSKK+S +RE Sbjct: 13 PTCDLEEEARTRGYRRVAGLDEAGRGPLAGPVVGAAVIVPRRFSLRSLDDSKKVSPTERE 72 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L+ IT SA I AS ID N+ +AT A A+ L++ P L+DG + D Sbjct: 73 ALFSVITESATAWGIGVASEAEIDSLNVLRATWLAWQRAINQLRIPPDFLLVDGH-LGAD 131 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + +VI GD +S SIAAASI+AKV RDR+M H++ P Y F H GYPT +H +++ Sbjct: 132 VFIPHRSVIHGDRLSSSIAAASILAKVFRDRIMCEYHERDPRYRFHIHKGYPTPEHLRLL 191 Query: 189 KEKGPSCIHRLTFRPLRN 206 ++ GPS +HR +F P+R Sbjct: 192 RQFGPSPVHRHSFGPVRR 209 >gi|238763964|ref|ZP_04624920.1| Ribonuclease HII [Yersinia kristensenii ATCC 33638] gi|238697781|gb|EEP90542.1| Ribonuclease HII [Yersinia kristensenii ATCC 33638] Length = 183 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 82/180 (45%), Positives = 109/180 (60%), Gaps = 2/180 (1%) Query: 29 IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSAS 87 +DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A+ S+ A Sbjct: 1 MDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEIIDKALSWSLGRAE 60 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 + ID NI AT+ A+ AV L + P LIDG P+ L + AV+KGDS I+ Sbjct: 61 PEEIDHLNILHATMLAMQRAVAGLHIAPDYVLIDGNRCPK-LAMPSLAVVKGDSRVAEIS 119 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 AASI+AKVTRDR M ++P YGF H GYPTA H + + G + HR +F P++ + Sbjct: 120 AASILAKVTRDREMTELDLQFPGYGFAQHKGYPTAVHLEKLAALGATEHHRRSFGPVKRV 179 >gi|302344581|ref|YP_003809110.1| ribonuclease H [Desulfarculus baarsii DSM 2075] gi|301641194|gb|ADK86516.1| Ribonuclease H [Desulfarculus baarsii DSM 2075] Length = 217 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 79/178 (44%), Positives = 114/178 (64%), Gaps = 4/178 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG DE GRG LAGPVV AA++L + G++DSK++S +RE L E+I + A +++ Sbjct: 29 LAGADEAGRGPLAGPVVAAAVMLRADWPDPGVDDSKRLSAARREFLAERIKADAAGWAVA 88 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-PEDLPCQAFAVIKGDSIS 143 ID+ NIH A+L A+ AVE L+ P L+DGR + P DLP +A V+ GD+ Sbjct: 89 VVEADEIDRLNIHNASLLAMSRAVEQLRPRPDFLLVDGRFVTPLDLPQKA--VVGGDASC 146 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AKV RD LM H+++P Y F ++ GYPT +H++ + GP IHR ++ Sbjct: 147 RCIAAASILAKVWRDGLMARLHERWPQYNFAANKGYPTPQHKEALARFGPCPIHRRSY 204 >gi|224476370|ref|YP_002633976.1| ribonuclease HII [Staphylococcus carnosus subsp. carnosus TM300] gi|254807988|sp|B9DPH3|RNH2_STACT RecName: Full=Ribonuclease HII; Short=RNase HII gi|222420977|emb|CAL27791.1| putative RNase HII [Staphylococcus carnosus subsp. carnosus TM300] Length = 261 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 80/183 (43%), Positives = 116/183 (63%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK-ITSSAIISIS 84 + GIDEVGRG LAGPVV A+IL+ ++ +G++DSKK+S R++L E I + + Sbjct: 74 ICGIDEVGRGPLAGPVVACAVILNADHAYYGLDDSKKVSAANRQKLSEALIEKTTAYAYG 133 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A+ + ID NI++AT A+ A+ENL V P LID +P D+ ++IKGD+ S+ Sbjct: 134 IATPEEIDDLNIYQATQVAMMRAIENLNVTPTHLLIDAMELPLDIA--QTSIIKGDAKSV 191 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASI+AK RD MR ++YP Y F+ +VGY T H + IK G HR +F P+ Sbjct: 192 SIAAASILAKEHRDTYMRQLAEQYPGYDFEHNVGYGTKAHLEGIKRLGIIPEHRKSFEPI 251 Query: 205 RNL 207 +++ Sbjct: 252 KSI 254 >gi|302389636|ref|YP_003825457.1| RNase HII [Thermosediminibacter oceani DSM 16646] gi|302200264|gb|ADL07834.1| RNase HII [Thermosediminibacter oceani DSM 16646] Length = 237 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 90/191 (47%), Positives = 120/191 (62%), Gaps = 2/191 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E ++ E+ +AG+DE GRG LAGPVV AA+IL + +NDSK +S K+RE + Sbjct: 38 FARERLLSERGYRYIAGVDEAGRGPLAGPVVAAAVILPLDVFILKLNDSKLLSEKQREAV 97 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YE+I A+ ++ S +YID+HNI ATL A+ AV+ L V P L+D IP L Sbjct: 98 YEEIKQKAVAVNFSVVDEKYIDEHNILNATLHAMQKAVQGLSVKPDIVLVDALKIP-GLD 156 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 Q +I GD + SIAAASIIAKV RDR+M+ H+ YP Y F ++ GY T KH + IK+ Sbjct: 157 VQQENIIHGDRLCASIAAASIIAKVERDRIMKNYHELYPHYDFCNNKGYCTKKHVESIKK 216 Query: 191 KGPSCIHRLTF 201 G S IHR +F Sbjct: 217 YGLSPIHRRSF 227 >gi|103486453|ref|YP_616014.1| ribonuclease HII [Sphingopyxis alaskensis RB2256] gi|122985137|sp|Q1GUJ1|RNH2_SPHAL RecName: Full=Ribonuclease HII; Short=RNase HII gi|98976530|gb|ABF52681.1| Ribonuclease H [Sphingopyxis alaskensis RB2256] Length = 198 Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 78/184 (42%), Positives = 113/184 (61%), Gaps = 2/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + G+DE GRG LAGPVV AA++L I G++DSKK+S ++R L I + I Sbjct: 16 IVGVDEAGRGPLAGPVVAAAVLLCEGGIA-GLDDSKKLSARRRGALESAIRAQCRWGIGE 74 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS + ID+ NI +AT A+ AVE L P L+DG +P QA A++ GD++ Sbjct: 75 ASVEEIDRINILQATFLAMTRAVEALGFEPAEVLVDGNRLPR-WRYQARAIVGGDALHPC 133 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AK RDRLM A + YP +G++S++GY TA+H ++ GP+ HR +F P+ Sbjct: 134 ISAASILAKQHRDRLMIAAAQDYPAFGWESNMGYGTAQHLAALRRHGPTPHHRTSFAPVA 193 Query: 206 NLSV 209 L + Sbjct: 194 QLQL 197 >gi|257468837|ref|ZP_05632931.1| ribonuclease HII [Fusobacterium ulcerans ATCC 49185] Length = 239 Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 84/181 (46%), Positives = 109/181 (60%), Gaps = 4/181 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + G+DE GRG LAG VV AA+ I D N+ INDSK+IS KKRE LY+ + + + Sbjct: 53 EIIGVDEAGRGPLAGSVVAAAVKIKDYNSDLDEINDSKQISEKKRERLYDVVKEHFYVGV 112 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS---ALIDGRSIPEDLPCQAFAVIKGD 140 A + ID+ NI AT A+ A+ENL+ L+DG + + ++KGD Sbjct: 113 GVADAKEIDEINILNATFLAMRRALENLKKECEGEYLVLVDGNFKIREYKGRQEPIVKGD 172 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 SLSIAAASIIAKVTRDR+MR KYP YGF+ H GY T +H+ I+E G IHR + Sbjct: 173 GKSLSIAAASIIAKVTRDRMMREEAVKYPLYGFEKHKGYGTKQHRDAIEEHGVLDIHRKS 232 Query: 201 F 201 F Sbjct: 233 F 233 >gi|325983657|ref|YP_004296059.1| ribonuclease H [Nitrosomonas sp. AL212] gi|325533176|gb|ADZ27897.1| Ribonuclease H [Nitrosomonas sp. AL212] Length = 190 Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 82/183 (44%), Positives = 107/183 (58%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 + G+DE GRG LAGPV A ++L+ G+ DSKK+S KR L I A SIS Sbjct: 2 ICGVDEAGRGPLAGPVYAACVVLNKTLTIDGLADSKKLSETKRNALAVIIKKLAKAWSIS 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS Q ID+ NI +A+L A+ AVE+L P LIDG P L C +++GDS+ Sbjct: 62 YASVQEIDRLNILQASLLAMKRAVESLPFTPDIVLIDGNQSPH-LHCPMRTIVRGDSLIP 120 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AK RD M+ H+ +P YGFD H GYPT H ++ G IHR +F P+ Sbjct: 121 EISAASILAKTARDAEMQRLHRHFPRYGFDKHKGYPTKVHLAALQRYGACAIHRQSFAPV 180 Query: 205 RNL 207 R L Sbjct: 181 RTL 183 >gi|159028469|emb|CAO87276.1| rnhB [Microcystis aeruginosa PCC 7806] Length = 207 Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 83/188 (44%), Positives = 116/188 (61%), Gaps = 4/188 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 +AG+DEVGRGAL GPVV A ++ P+ P G+ DSK++S +KR++L ++I + Sbjct: 7 IAGVDEVGRGALFGPVVAAVVVTVPSGFPQLWELGVKDSKQLSPQKRQKLSQQIQRDFVC 66 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I A+ + ID+ NI A+L A+ A+ L + P LIDG+ I +DL AVI+GD Sbjct: 67 RIGYATVKEIDRLNILHASLLAMSRAIGKLPLSPSLCLIDGKHIIKDLSIPQKAVIQGDQ 126 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 S IAAASI+AKV RD L+ H +YPDYG H GY TA+H + I G + HRL+F Sbjct: 127 QSPVIAAASIVAKVWRDDLIARWHGRYPDYGLPRHKGYGTAQHLEAIGNHGLTSQHRLSF 186 Query: 202 RPLRNLSV 209 P + + V Sbjct: 187 SPCQQIRV 194 >gi|116621683|ref|YP_823839.1| RNase HII [Candidatus Solibacter usitatus Ellin6076] gi|122254551|sp|Q024M2|RNH2_SOLUE RecName: Full=Ribonuclease HII; Short=RNase HII gi|116224845|gb|ABJ83554.1| RNase HII [Candidatus Solibacter usitatus Ellin6076] Length = 228 Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 81/193 (41%), Positives = 116/193 (60%), Gaps = 3/193 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 LE +R + VAG+DEVGRGAL G V A+IL G+NDSK++ ++RE L Sbjct: 16 LERELRARGFRAVAGVDEVGRGALFGAVFAGAVILSEERPIRGLNDSKQLDPERREVLAG 75 Query: 74 KITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I A+ SI++ ID NI++A+ A+ AV L P L+D ++P + Sbjct: 76 RIRERAVAWSIAAVDASTIDSINIYQASRMAMRIAVSRLSPAPDFLLVD--AVPLEFAVP 133 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A+IKGD +IAAASI+AKV RD MR+ K +P+YG SH GY T +H + I++ G Sbjct: 134 QRALIKGDERCHAIAAASILAKVARDECMRVWDKVFPEYGLASHKGYSTPEHYRAIEQYG 193 Query: 193 PSCIHRLTFRPLR 205 P+ +HRL+F P+R Sbjct: 194 PTPLHRLSFEPVR 206 >gi|58038820|ref|YP_190784.1| ribonuclease HII [Gluconobacter oxydans 621H] gi|81352528|sp|Q5FU18|RNH2_GLUOX RecName: Full=Ribonuclease HII; Short=RNase HII gi|58001234|gb|AAW60128.1| Ribonuclease HII [Gluconobacter oxydans 621H] Length = 207 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 88/203 (43%), Positives = 121/203 (59%), Gaps = 10/203 (4%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHK 66 P + LEA + V GIDEVGRG LAGPVV +A+ + ++DSKK++ + Sbjct: 2 PDYALEA----AHGGLVVGIDEVGRGPLAGPVVASAVAFTAPPSETLSSLLDDSKKLTAR 57 Query: 67 KREELYEKITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 +R YE + + A+I I +AS I++ NI +A A+ A+ L P AL+DG+ Sbjct: 58 RRMLAYEALMADEQALIGIGAASVAEIERINIAQACYLAMRRALSRLGCTPDLALVDGKH 117 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 P+ LPC VI GD ISLSIAAASIIAKVTRDRLM ++ YG++ + GY TA H Sbjct: 118 APK-LPCPIKMVIGGDGISLSIAAASIIAKVTRDRLMVRLAVRHDAYGWERNAGYGTAAH 176 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 Q +K +G + HR F P+RN+ Sbjct: 177 MQGLKLRGVTPHHRRGFAPIRNM 199 >gi|330444662|ref|YP_004377648.1| ribonuclease HII [Chlamydophila pecorum E58] gi|328807772|gb|AEB41945.1| ribonuclease HII [Chlamydophila pecorum E58] Length = 209 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 86/194 (44%), Positives = 122/194 (62%), Gaps = 4/194 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + ++ VAG+DE GRG LAGPVV A IL N + GINDSK+++ K+R + E Sbjct: 12 FERELAQEGFTLVAGVDEAGRGPLAGPVVAGACILPKNKVFLGINDSKQLTPKQRGLIRE 71 Query: 74 KIT--SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + S I I S + ID+ NI +AT +A++ A+ +L ++P L+DG + +PC Sbjct: 72 TLLCDSEVISGIGVVSVERIDEINILEATKEAMHQAIASLSLVPDFLLVDGLHLSHRVPC 131 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGD+ S SIAAASI+AK RD LMR H+KYP+YGFD H GY TA H + ++ Sbjct: 132 KK--IIKGDARSASIAAASILAKEHRDDLMRDLHQKYPEYGFDKHKGYGTAAHMEALRRY 189 Query: 192 GPSCIHRLTFRPLR 205 G S HR +F P++ Sbjct: 190 GASPCHRRSFSPVK 203 >gi|302038368|ref|YP_003798690.1| ribonuclease HII [Candidatus Nitrospira defluvii] gi|300606432|emb|CBK42765.1| Ribonuclease HII [Candidatus Nitrospira defluvii] Length = 224 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 90/206 (43%), Positives = 121/206 (58%), Gaps = 12/206 (5%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P E E R + +AG+DE GRG LAGPVV AA++L G+NDSK++ R Sbjct: 12 PTEEFEVEARCRGYRHIAGLDEAGRGPLAGPVVAAAVVLPRRCSLPGLNDSKQVGESDRV 71 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID-----GR 123 L+ +I A + I +A+ ID+ NI AT A+ A+E L + P L+D G Sbjct: 72 RLFVEIVRRATGVGIGAATEAEIDQLNILHATRLAMRRALEALPLQPDFLLLDAVTLSGL 131 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 SIP+ ++IKGD +S SIAAASIIAKVTRDRLM H+ YP Y F H GY T + Sbjct: 132 SIPQR------SIIKGDGLSCSIAAASIIAKVTRDRLMVEYHRWYPQYNFAEHKGYGTPE 185 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLSV 209 H ++++E GP IHR +F P++ L V Sbjct: 186 HLRLLREHGPCAIHRRSFAPVQQLCV 211 >gi|170727606|ref|YP_001761632.1| ribonuclease HII [Shewanella woodyi ATCC 51908] gi|238688705|sp|B1KNS9|RNH2_SHEWM RecName: Full=Ribonuclease HII; Short=RNase HII gi|169812953|gb|ACA87537.1| Ribonuclease H [Shewanella woodyi ATCC 51908] Length = 213 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 89/188 (47%), Positives = 118/188 (62%), Gaps = 10/188 (5%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DEVGRG L G VV AA+ILDPNN G+NDSKK++ KKRE L+ +I A+ I++ Sbjct: 21 AGVDEVGRGPLVGNVVTAAVILDPNNPITGLNDSKKLTEKKRELLFAEIHEKALCINVGH 80 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--------EDLPCQAFAVI 137 A+ ID+ NI AT+ A+ AV L + P S L+DG P ED +A AV+ Sbjct: 81 ATPDEIDELNILHATMLAMQRAVAGLDIKPLSVLVDGNRTPAFYHGEETEDR-IEAHAVV 139 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD + +I+AASIIAKV RDR M + +YP YGF H GYPT H + ++ G H Sbjct: 140 KGDGLISAISAASIIAKVIRDREMDLLDMEYPQYGFAKHKGYPTKAHFEALELHGVLPEH 199 Query: 198 RLTFRPLR 205 R +FRP++ Sbjct: 200 RKSFRPVK 207 >gi|325294887|ref|YP_004281401.1| ribonuclease H [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065335|gb|ADY73342.1| Ribonuclease H [Desulfurobacterium thermolithotrophum DSM 11699] Length = 236 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 83/193 (43%), Positives = 112/193 (58%), Gaps = 7/193 (3%) Query: 20 EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E+ W +AGIDE GRG LAGPVV AA+I + IPF DSKK++ K+R+EL+ K Sbjct: 11 EREYWNKGYKLIAGIDEAGRGPLAGPVVAAAVIFPQSVIPFLFKDSKKLTEKRRKELFFK 70 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI + + A IDK NI AT A+ A+ +L V P + D I E+ ++ Sbjct: 71 IFEKAICVGVGFADSLEIDKLNILNATKLAVKRALSSLPVQPDFLITDALEI-EEFKDRS 129 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 + KGD S S A AS++AKVTRD +M + +P YGF+ H GYPT H I+E G Sbjct: 130 LVLTKGDEKSFSCACASVVAKVTRDFIMEKLAELFPAYGFEKHKGYPTKFHISKIEEIGI 189 Query: 194 SCIHRLTFRPLRN 206 S +HR +F +R Sbjct: 190 SPVHRRSFGRVRE 202 >gi|323705455|ref|ZP_08117030.1| Ribonuclease H [Thermoanaerobacterium xylanolyticum LX-11] gi|323535357|gb|EGB25133.1| Ribonuclease H [Thermoanaerobacterium xylanolyticum LX-11] Length = 252 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 83/177 (46%), Positives = 109/177 (61%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG LAGPVV +IL + I+DSKK+S KRE L E I AI I Sbjct: 70 IGGIDEVGRGPLAGPVVAGCVILPKQSFIPDIDDSKKLSESKRELLSEIIKKKAIAYGIG 129 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 ++ ID+ NI +T +A+ A+ NL + L+D +IP D+ +IKGD+ S+ Sbjct: 130 IIDNEQIDRINILNSTYEAMKVAISNLNIKADFLLVDAITIP-DIDIAQIPIIKGDAKSI 188 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASI+AKVTRD +MR + YP YGF + GY T +H + IK+ GP IHR TF Sbjct: 189 SIAAASIVAKVTRDNIMRKYDEMYPQYGFCKNKGYGTKEHIEAIKKYGPCPIHRKTF 245 >gi|262067279|ref|ZP_06026891.1| ribonuclease HII [Fusobacterium periodonticum ATCC 33693] gi|291379005|gb|EFE86523.1| ribonuclease HII [Fusobacterium periodonticum ATCC 33693] Length = 217 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 84/183 (45%), Positives = 115/183 (62%), Gaps = 7/183 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84 V G+DE GRG LAGPVV AA+IL + INDSKK++ KKRE+LY+ I ++ +++ Sbjct: 15 VIGVDEAGRGPLAGPVVAAAVILKQYSEELDEINDSKKLTEKKREKLYDIILNNFNVAVG 74 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPCQAFAVIKG 139 AS + IDK NI A A+ A+++L+ + L+DG ++ + V+KG Sbjct: 75 IASVEEIDKLNILNADFLAMRRALKDLEKFHEANKDYIVLVDGNLKIKEYEGKQLPVVKG 134 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHR 198 D+ SLSIAAASIIAKVTRDR+M+ KYPDY F+ + GY T KH + IK KG +HR Sbjct: 135 DAKSLSIAAASIIAKVTRDRIMKGLGLKYPDYDFEKNKGYGTKKHVEAIKTKGVLKNVHR 194 Query: 199 LTF 201 F Sbjct: 195 KVF 197 >gi|319762189|ref|YP_004126126.1| ribonuclease h [Alicycliphilus denitrificans BC] gi|330825999|ref|YP_004389302.1| ribonuclease H [Alicycliphilus denitrificans K601] gi|317116750|gb|ADU99238.1| Ribonuclease H [Alicycliphilus denitrificans BC] gi|329311371|gb|AEB85786.1| Ribonuclease H [Alicycliphilus denitrificans K601] Length = 206 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 83/181 (45%), Positives = 119/181 (65%), Gaps = 4/181 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DE GRG LAGPVV AA+ILD G+ DSK ++ +RE L+++I + A+ S++ Sbjct: 21 VAGVDEAGRGPLAGPVVAAAVILDDQQPIVGLADSKALTAARRERLFDEIRAKALCCSVA 80 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 AS + ID+ NI +ATL A+ AV+ L++ P AL+DG +P D+P +A ++KGD+ Sbjct: 81 EASVEEIDRLNILQATLLAMRRAVQGLRLKPTLALVDGNRLPRLDMPAEA--IVKGDARV 138 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKVTRDR H +YP YGF H GY TA+H ++ G HR +F P Sbjct: 139 AAISAASILAKVTRDRWCAELHAQYPQYGFAGHKGYGTAEHLAALQAHGACPQHRRSFAP 198 Query: 204 L 204 + Sbjct: 199 V 199 >gi|258423915|ref|ZP_05686800.1| ribonuclease HII [Staphylococcus aureus A9635] gi|257845944|gb|EEV69973.1| ribonuclease HII [Staphylococcus aureus A9635] Length = 255 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 85/201 (42%), Positives = 121/201 (60%), Gaps = 4/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E +++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTL- 174 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H Sbjct: 175 -DNALTQVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G HR +F P+++L Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254 >gi|285018804|ref|YP_003376515.1| ribonuclease hII (rnase hII, degrades rna of DNA-rna hybrids) protein [Xanthomonas albilineans GPE PC73] gi|283474022|emb|CBA16523.1| probable ribonuclease hII (rnase hII, degrades rna of dna-rna hybrids) protein [Xanthomonas albilineans] Length = 219 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 82/181 (45%), Positives = 115/181 (63%), Gaps = 2/181 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAII-SIS 84 AG+DE GRG LAGPV VAA++ DPN G++DSK+++ +RE LY +I A+ + Sbjct: 25 AGVDEAGRGPLAGPVAVAAVVFDPNQPRINGLDDSKQLTAARRETLYPRIIERALAWQVV 84 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD++ Sbjct: 85 LIEAEEIDRLNIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALDR 144 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I AASIIAKVTRDR+M+ H ++P YGFD H GY T H + GP HR +F P+ Sbjct: 145 AIMAASIIAKVTRDRIMQHLHAEHPHYGFDLHKGYATPAHLAALAAHGPCPQHRRSFAPV 204 Query: 205 R 205 R Sbjct: 205 R 205 >gi|73748590|ref|YP_307829.1| ribonuclease HII [Dehalococcoides sp. CBDB1] gi|97182414|sp|Q3ZXD6|RNH2_DEHSC RecName: Full=Ribonuclease HII; Short=RNase HII gi|73660306|emb|CAI82913.1| ribonuclease HII [Dehalococcoides sp. CBDB1] Length = 212 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 82/197 (41%), Positives = 114/197 (57%), Gaps = 5/197 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREEL 71 E ++R++ +AG+DE GRG LAGPVV A+I+ P + + DSK +S KRE L Sbjct: 13 EKLLRKQGFILIAGLDEAGRGCLAGPVVAGAVIMPPRLKGDWVEMVRDSKVLSPAKREYL 72 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y I S A+ + + ++ ID I AT A+ AVE+L P L+D +P D+P Sbjct: 73 YCHIVSMAVTFGVGAVDNEQIDSMGIAPATRLAMKQAVEDLTCQPDFLLVDYLKLP-DIP 131 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++ GD++ SIA ASI+AKV+RDRLM +YP Y H GY TA H + I + Sbjct: 132 LPQKGIVNGDALCFSIACASIVAKVSRDRLMSKLDMEYPGYYLAKHKGYGTALHVECICQ 191 Query: 191 KGPSCIHRLTFRPLRNL 207 KG S IHR TF PL+ + Sbjct: 192 KGISPIHRRTFAPLKGM 208 >gi|205373355|ref|ZP_03226159.1| ribonuclease HII [Bacillus coahuilensis m4-4] Length = 253 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 89/194 (45%), Positives = 128/194 (65%), Gaps = 8/194 (4%) Query: 20 EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 EK +W +AG+DEVGRG LAGPVV AA+IL + G++DSKK++ K+EE+++ Sbjct: 60 EKKLWEGGIKRIAGVDEVGRGPLAGPVVAAAVILPQSFYYPGLDDSKKLTESKKEEMFDY 119 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I ++AI +S+S +H ID NI++AT A+ A+ L + P LID + + + Sbjct: 120 INATAISVSVSIINHDVIDTVNIYEATKLAMQQAINGLDLTPEYLLIDAMKL--SMGIEE 177 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGDS S+SIAAASIIAKVTRDRLM+ YP Y F+ ++GY T +H + +K GP Sbjct: 178 ESIIKGDSKSISIAAASIIAKVTRDRLMKEYATTYPHYAFERNMGYGTTEHLEGLKSVGP 237 Query: 194 SCIHRLTFRPLRNL 207 S IHR +F P++ L Sbjct: 238 SPIHRRSFAPIKEL 251 >gi|304388999|ref|ZP_07371046.1| ribonuclease HII [Neisseria meningitidis ATCC 13091] gi|304337133|gb|EFM03320.1| ribonuclease HII [Neisseria meningitidis ATCC 13091] Length = 194 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 83/184 (45%), Positives = 112/184 (60%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKI-TSSAIISI 83 AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L E I +A + Sbjct: 5 TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDTLAEMIKNQAAAWHV 63 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 S+A+ + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS Sbjct: 64 SAATPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKI 123 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183 Query: 204 LRNL 207 +RNL Sbjct: 184 VRNL 187 >gi|196228537|ref|ZP_03127404.1| Ribonuclease H [Chthoniobacter flavus Ellin428] gi|196227940|gb|EDY22443.1| Ribonuclease H [Chthoniobacter flavus Ellin428] Length = 202 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 83/194 (42%), Positives = 117/194 (60%), Gaps = 3/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +R VAGIDEVGRG LAGPVV AA+IL +NDSKK+S ++RE++Y + Sbjct: 4 ERKLRADGCVLVAGIDEVGRGPLAGPVVAAAVILPEKFRHKTLNDSKKLSAEQREKIYAE 63 Query: 75 ITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +T+ + ++ + ID+ NI +A+ +A+ +V L P ALIDG + P Sbjct: 64 LTTRENVHWTVCVVEVEEIDRINILRASHEAMRRSVTALATKPDHALIDGLPV-RPFPIP 122 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A++ GD++S SIAAAS+IAKVTRDR+M +++P Y F H GY T H +KE G Sbjct: 123 HTALVGGDALSFSIAAASVIAKVTRDRIMVEMDQRHPGYAFGQHKGYGTELHLARLKEHG 182 Query: 193 PSCIHRLTFRPLRN 206 P IHR +F P+ Sbjct: 183 PCPIHRRSFLPVEQ 196 >gi|147669350|ref|YP_001214168.1| ribonuclease H [Dehalococcoides sp. BAV1] gi|289432616|ref|YP_003462489.1| ribonuclease H [Dehalococcoides sp. GT] gi|189043591|sp|A5FR86|RNH2_DEHSB RecName: Full=Ribonuclease HII; Short=RNase HII gi|146270298|gb|ABQ17290.1| Ribonuclease H [Dehalococcoides sp. BAV1] gi|288946336|gb|ADC74033.1| Ribonuclease H [Dehalococcoides sp. GT] Length = 212 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 82/197 (41%), Positives = 114/197 (57%), Gaps = 5/197 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREEL 71 E ++R++ +AG+DE GRG LAGPVV A+I+ P + + DSK +S KRE L Sbjct: 13 EKLLRKQGFILIAGLDEAGRGCLAGPVVAGAVIMPPRLKGDWVEMVRDSKVLSPAKREYL 72 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y I S A+ + + ++ ID I AT A+ AVE+L P L+D +P D+P Sbjct: 73 YCHIVSMAVTFGVGAVDNEQIDSMGIAPATRLAMKQAVEDLTCQPDFLLVDYLKLP-DIP 131 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++ GD++ SIA ASI+AKV+RDRLM +YP Y H GY TA H + I + Sbjct: 132 LPQKGIVDGDALCFSIACASIVAKVSRDRLMSKLDMEYPGYYLAKHKGYGTALHVECICQ 191 Query: 191 KGPSCIHRLTFRPLRNL 207 KG S IHR TF PL+ + Sbjct: 192 KGISPIHRRTFAPLKGM 208 >gi|239636276|ref|ZP_04677278.1| putative ribonuclease HII [Staphylococcus warneri L37603] gi|239597631|gb|EEQ80126.1| putative ribonuclease HII [Staphylococcus warneri L37603] Length = 256 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 81/195 (41%), Positives = 120/195 (61%), Gaps = 9/195 (4%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR----EELY 72 ++ + N + GIDEVGRG LAGPVV A+IL+P + G+NDSKK+S K R ++L Sbjct: 65 ILAQNNKAIICGIDEVGRGPLAGPVVTCAVILNPGHRYLGLNDSKKVSAKNRVILNQQLK 124 Query: 73 EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 E +T A +SA ID+ NI++AT A+ A++ L + P LID ++ ++ Sbjct: 125 EGVTDYAYGIATSAE---IDEMNIYQATRLAMQRAIDQLNIRPTQLLIDAMTLDNEIS-- 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SIAAASI+AK RD M+ K+YP Y F+ +VGY T H + I + G Sbjct: 180 QTSIIKGDAKSVSIAAASIMAKEYRDHYMKELAKQYPGYDFEKNVGYGTKAHLEGIAQNG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR TF P++++ Sbjct: 240 VISEHRKTFEPIKSI 254 >gi|88857963|ref|ZP_01132605.1| RNAse HII [Pseudoalteromonas tunicata D2] gi|88819580|gb|EAR29393.1| RNAse HII [Pseudoalteromonas tunicata D2] Length = 194 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 81/187 (43%), Positives = 114/187 (60%), Gaps = 2/187 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81 N +AG+DEVGRG L G VV AA+ILDP G+ DSKK++ KKR+ L +I A+ Sbjct: 7 NYQFIAGVDEVGRGPLVGDVVTAAVILDPTKPIVGLADSKKLTDKKRQALAIEIKEKALC 66 Query: 82 -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I+ AS ID+ NI AT+ A+ AV L + +DG +P+ L A AV+KGD Sbjct: 67 YCIARASVAEIDELNILHATMLAMTRAVAGLSIPAEFVFVDGNRLPK-LSVPAQAVVKGD 125 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+ I+AASI+AKV RD M ++P+YGF H GYPT H + +++ G + HR + Sbjct: 126 SLVAEISAASILAKVARDDEMIALDAQFPEYGFAGHKGYPTKAHLEALQQHGVTEHHRKS 185 Query: 201 FRPLRNL 207 F+P++ L Sbjct: 186 FKPVKIL 192 >gi|317063087|ref|ZP_07927572.1| ribonuclease HII [Fusobacterium ulcerans ATCC 49185] gi|313688763|gb|EFS25598.1| ribonuclease HII [Fusobacterium ulcerans ATCC 49185] Length = 216 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 84/181 (46%), Positives = 109/181 (60%), Gaps = 4/181 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + G+DE GRG LAG VV AA+ I D N+ INDSK+IS KKRE LY+ + + + Sbjct: 30 EIIGVDEAGRGPLAGSVVAAAVKIKDYNSDLDEINDSKQISEKKRERLYDVVKEHFYVGV 89 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS---ALIDGRSIPEDLPCQAFAVIKGD 140 A + ID+ NI AT A+ A+ENL+ L+DG + + ++KGD Sbjct: 90 GVADAKEIDEINILNATFLAMRRALENLKKECEGEYLVLVDGNFKIREYKGRQEPIVKGD 149 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 SLSIAAASIIAKVTRDR+MR KYP YGF+ H GY T +H+ I+E G IHR + Sbjct: 150 GKSLSIAAASIIAKVTRDRMMREEAVKYPLYGFEKHKGYGTKQHRDAIEEHGVLDIHRKS 209 Query: 201 F 201 F Sbjct: 210 F 210 >gi|296110320|ref|YP_003620701.1| ribonuclease HII [Leuconostoc kimchii IMSNU 11154] gi|295831851|gb|ADG39732.1| ribonuclease HII [Leuconostoc kimchii IMSNU 11154] Length = 254 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 84/198 (42%), Positives = 118/198 (59%), Gaps = 3/198 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E + M +AG+DEVGRG LAGPV+ AA+IL + + DSK++S KR++ Sbjct: 58 RFAFERHFWNQGMSDIAGVDEVGRGPLAGPVIAAAVILPHDFNVVEVIDSKQLSADKRDK 117 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY+ I + A+ I + ID NI++A A+ AV+NL P LID ++ +L Sbjct: 118 LYDLILAQAVSIGVGVVDAPTIDDINIYQAARLAMTKAVQNLAPEPDVLLIDAMTL--NL 175 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +IKGD++S SI AASI+AKVTRDRLM YP YGF + GY T H ++ Sbjct: 176 PLPQEPLIKGDALSNSIGAASIVAKVTRDRLMADYDDIYPGYGFAKNAGYGTKLHLDQMR 235 Query: 190 EKGPSCIHRLTFRPLRNL 207 + G + IHR +F P+R+L Sbjct: 236 QLGITPIHRRSFGPVRDL 253 >gi|34763383|ref|ZP_00144335.1| Ribonuclease HII [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|294786017|ref|ZP_06751304.1| ribonuclease HII [Fusobacterium sp. 3_1_27] gi|27886956|gb|EAA24076.1| Ribonuclease HII [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|294486354|gb|EFG33717.1| ribonuclease HII [Fusobacterium sp. 3_1_27] Length = 214 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 83/189 (43%), Positives = 117/189 (61%), Gaps = 8/189 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84 V G+DE GRG LAGPVV AA+IL + INDSKK++ K RE+LY+ I + +++ Sbjct: 19 VIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSKKLTEKTREKLYDIIMKNFYVAVG 78 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPR-----SALIDGRSIPEDLPCQAFAVIKG 139 ++ + IDK NI A A+ A+++L+ I + + L+DG ++ + ++KG Sbjct: 79 VSTVEEIDKLNILNADFLAMRRALKDLENIKKDKKEYTVLVDGNLKIKEYTGKQLPIVKG 138 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHR 198 D+ SLSIAAASIIAKVTRDRLM+ YPDY F+ H GY T H + IK+KG +HR Sbjct: 139 DAKSLSIAAASIIAKVTRDRLMKDLASVYPDYHFEKHKGYGTKAHIEAIKDKGAIEGVHR 198 Query: 199 LTF-RPLRN 206 F R + N Sbjct: 199 KVFLRKINN 207 >gi|119505680|ref|ZP_01627750.1| Ribonuclease H [marine gamma proteobacterium HTCC2080] gi|119458492|gb|EAW39597.1| Ribonuclease H [marine gamma proteobacterium HTCC2080] Length = 199 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 79/183 (43%), Positives = 114/183 (62%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 +AG+DEVGRG LAG VV AA+I +++P G+ DSKK++ K+RE+L I SSA ++ Sbjct: 17 IAGVDEVGRGPLAGDVVAAAVIFG-DSVPAGVTDSKKLTAKRREQLAVAIKSSARAWCVA 75 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID NI +A+L A++ AV+ L + P L+DG +P ++ +I GD++ + Sbjct: 76 RASVAEIDSLNILQASLLAMHRAVDGLSLAPEFVLVDGNRLPS-WNYKSKPIIGGDALEV 134 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI AASI+AKV RD M +YP YGF H GYPT +H + G + HR +F P+ Sbjct: 135 SIGAASILAKVQRDAEMVALDDEYPGYGFARHKGYPTREHMAALAALGVTPWHRKSFAPV 194 Query: 205 RNL 207 + L Sbjct: 195 KRL 197 >gi|299140089|ref|ZP_07033258.1| Ribonuclease H [Acidobacterium sp. MP5ACTX8] gi|298597935|gb|EFI54104.1| Ribonuclease H [Acidobacterium sp. MP5ACTX8] Length = 257 Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 82/208 (39%), Positives = 120/208 (57%), Gaps = 13/208 (6%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN---IPFGI 57 + C+ PE+ +R + +AG+DEVGRGAL GPVV AA+IL G+ Sbjct: 26 LICSDAPEQ-------ALRYQGFQSIAGVDEVGRGALFGPVVAAAVILPEKTGILARMGL 78 Query: 58 NDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116 DSK+++ + RE L KI + A+ ++I+ ID+ NI++A+ A+ AV+ L + P Sbjct: 79 KDSKQLTREDRERLDRKIRTMALAVAIAEVDAATIDRVNIYQASRMAMLMAVQQLGIAPD 138 Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 +ID I D PC + GD++ LSIAAAS++AKV RD L+R YP YG SH Sbjct: 139 HLIIDAMRI--DHPCPQTKLYYGDALCLSIAAASVVAKVYRDGLLREFDTVYPQYGLASH 196 Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 GY T +H++ + GP +HR TF P+ Sbjct: 197 KGYGTPEHRRALVAHGPCELHRHTFAPV 224 >gi|323127302|gb|ADX24599.1| ribonuclease HII [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 256 Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 87/204 (42%), Positives = 127/204 (62%), Gaps = 12/204 (5%) Query: 14 LEAMVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LEAM+ EK ++ +AGIDEVGRG LAGPVV A +IL + G+NDSKKI K Sbjct: 55 LEAMLSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKSK 114 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR 123 E +Y+ + A+ I I +Q ID+ NI++AT A+ A++ L+ P LID Sbjct: 115 HETIYQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAM 174 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 ++ +P Q+ +IKGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T + Sbjct: 175 TLDIAIPQQS--IIKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNSGYGTKE 232 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H ++ G + IHR +F P++++ Sbjct: 233 HLDGLRTHGITPIHRKSFEPIKSM 256 >gi|254282787|ref|ZP_04957755.1| ribonuclease HII [gamma proteobacterium NOR51-B] gi|219678990|gb|EED35339.1| ribonuclease HII [gamma proteobacterium NOR51-B] Length = 204 Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 86/189 (45%), Positives = 115/189 (60%), Gaps = 3/189 (1%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 E++ VAG+DEVGRG LAG VV AA+IL + P GI DSKK+S K+R +L +I + A Sbjct: 9 ERSGQRVAGVDEVGRGPLAGDVVAAAVILG-DVSPAGITDSKKLSPKRRAQLAVQIKAEA 67 Query: 80 II-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 SI AS ID+ NI +A+L A+ AVE L + P L+DG +P ++ V+ Sbjct: 68 CCWSIGRASVDEIDRLNILEASLLAMTRAVEGLSLRPDFILVDGNRLPR-WDYRSEPVVG 126 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD I +I AASIIAKV RD + ++YP YGF H GYPT H + + G + IHR Sbjct: 127 GDGIEPAIGAASIIAKVQRDEELIALDEQYPGYGFAQHKGYPTRAHLEALASLGVTPIHR 186 Query: 199 LTFRPLRNL 207 +F P+R L Sbjct: 187 RSFAPVRRL 195 >gi|227543435|ref|ZP_03973484.1| ribonuclease H [Lactobacillus reuteri CF48-3A] gi|300910102|ref|ZP_07127562.1| ribonuclease H [Lactobacillus reuteri SD2112] gi|227186587|gb|EEI66658.1| ribonuclease H [Lactobacillus reuteri CF48-3A] gi|300892750|gb|EFK86110.1| ribonuclease H [Lactobacillus reuteri SD2112] Length = 256 Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 81/194 (41%), Positives = 116/194 (59%), Gaps = 3/194 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F+ E EK VAG+DEVGRG LAGPVV +IL+ + G+ DSK+++ +RE L Sbjct: 60 FKYEKYYWEKGYQYVAGMDEVGRGPLAGPVVTCVVILNADFDLIGVTDSKQLTRHERENL 119 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y +I A+ +SI+ ID+ NI+ AT DA+ AV +L P ++D + D+P Sbjct: 120 YLRIVDEAVEVSIAVNDAPVIDQMNIYAATQDAMIRAVNHLHHRPDHLIVDAVPLAIDIP 179 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD S+S+AAASI+AK RD LMR YP YGF ++GY T +H +++ Sbjct: 180 QTT--LIKGDQKSISVAAASIVAKEYRDHLMRDYDYVYPGYGFAQNMGYGTKEHLAGLEK 237 Query: 191 KGPSCIHRLTFRPL 204 G + IHR +F P+ Sbjct: 238 MGATPIHRRSFNPV 251 >gi|19704706|ref|NP_604268.1| ribonuclease HII [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|39932432|sp|Q8RDX3|RNH2_FUSNN RecName: Full=Ribonuclease HII; Short=RNase HII gi|19715020|gb|AAL95567.1| Ribonuclease HII [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 215 Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 81/182 (44%), Positives = 113/182 (62%), Gaps = 6/182 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84 V G+DE GRG LAGPVV AA+IL INDSKK++ KKRE+LY+ I + +++ Sbjct: 21 VIGVDEAGRGPLAGPVVAAAVILKEYTEELDEINDSKKLTEKKREKLYDIIMKNFDVAVG 80 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPR----SALIDGRSIPEDLPCQAFAVIKGD 140 ++ + IDK NI A A+ A+++L+ + + L+DG ++ + ++KGD Sbjct: 81 ISTVEEIDKLNILNADFLAMRRALKDLKSLKNEKEYTVLVDGNLKIKEYIGKQLPIVKGD 140 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHRL 199 + SLSIAAASIIAKVTRDRLM+ YPDY F+ H GY T H + IK+KG +HR Sbjct: 141 AKSLSIAAASIIAKVTRDRLMKDLANIYPDYSFEKHKGYGTKTHIEAIKDKGAIEGVHRK 200 Query: 200 TF 201 F Sbjct: 201 VF 202 >gi|62185237|ref|YP_220022.1| ribonuclease HII [Chlamydophila abortus S26/3] gi|73917604|sp|Q5L5M0|RNH2_CHLAB RecName: Full=Ribonuclease HII; Short=RNase HII gi|62148304|emb|CAH64071.1| ribonuclease HII [Chlamydophila abortus S26/3] Length = 212 Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 89/196 (45%), Positives = 119/196 (60%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E V + +AGIDEVGRG LAGPVV A IL + G+NDSKK++ K+R ++ + Sbjct: 18 FEEEVFHEGFSLIAGIDEVGRGPLAGPVVAGACILPRGKVFAGVNDSKKLTPKERGKIRD 77 Query: 74 KIT--SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + S + S + ID+ NI +AT +A+ A+ NL + P L+DG +P +PC Sbjct: 78 ILVNDSEVYYGLGVVSVERIDEINILEATKEAMAAAIANLPIHPDFLLVDGLHLPHKIPC 137 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGDS S SIAAASI+AK RD LMR H+ YPDYGFD H GY TA H +K Sbjct: 138 KK--IIKGDSKSASIAAASILAKEYRDDLMRELHQLYPDYGFDKHKGYGTAAHLAALKAF 195 Query: 192 GPSCIHRLTFRPLRNL 207 GP HR +F P+R + Sbjct: 196 GPCDCHRKSFAPVRQV 211 >gi|296327674|ref|ZP_06870216.1| ribonuclease H [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155205|gb|EFG95980.1| ribonuclease H [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 213 Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 81/182 (44%), Positives = 113/182 (62%), Gaps = 6/182 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84 V G+DE GRG LAGPVV AA+IL INDSKK++ KKRE+LY+ I + +++ Sbjct: 19 VIGVDEAGRGPLAGPVVAAAVILKEYTEELDEINDSKKLTEKKREKLYDIIMKNFDVAVG 78 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPR----SALIDGRSIPEDLPCQAFAVIKGD 140 ++ + IDK NI A A+ A+++L+ + + L+DG ++ + ++KGD Sbjct: 79 ISTVEEIDKLNILNADFLAMRRALKDLKSLKNEKEYTVLVDGNLKIKEYIGKQLPIVKGD 138 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHRL 199 + SLSIAAASIIAKVTRDRLM+ YPDY F+ H GY T H + IK+KG +HR Sbjct: 139 AKSLSIAAASIIAKVTRDRLMKDLANIYPDYSFEKHKGYGTKTHIEAIKDKGAIEGVHRK 198 Query: 200 TF 201 F Sbjct: 199 VF 200 >gi|293366790|ref|ZP_06613466.1| ribonuclease HII [Staphylococcus epidermidis M23864:W2(grey)] gi|291319091|gb|EFE59461.1| ribonuclease HII [Staphylococcus epidermidis M23864:W2(grey)] Length = 260 Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 78/183 (42%), Positives = 115/183 (62%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG LAGPVV A+IL+ N+ G++DSKK+S R L + + + + Sbjct: 78 ICGIDEVGRGPLAGPVVACAVILEKNHHYIGLDDSKKVSPNNRARLNQNLKENVYQYAYG 137 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID+ NI++AT A+ A+ L V P LID ++ D+P ++IKGD+ S+ Sbjct: 138 IASSVEIDELNIYRATQLAMLRAINQLDVTPTHLLIDAMTLDIDIP--QTSIIKGDAKSV 195 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASI+AK RD+ MR K++P+YGFD + GY T +H + I + G HR +F P+ Sbjct: 196 SIAAASIMAKEYRDQYMRQLSKQFPEYGFDKNAGYGTKQHLKAIDQVGIINEHRQSFEPI 255 Query: 205 RNL 207 +++ Sbjct: 256 KSM 258 >gi|220928167|ref|YP_002505076.1| ribonuclease HII [Clostridium cellulolyticum H10] gi|254807971|sp|B8I7T9|RNH2_CLOCE RecName: Full=Ribonuclease HII; Short=RNase HII gi|219998495|gb|ACL75096.1| ribonuclease HII/HIII [Clostridium cellulolyticum H10] Length = 255 Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 90/192 (46%), Positives = 122/192 (63%), Gaps = 6/192 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREE 70 FE +A+ N +AG+DE GRG LAGPVV AA++L PN + GINDSKK+S +RE+ Sbjct: 62 FERQAISEGFNY--IAGVDEAGRGPLAGPVVAAAVVL-PNGLTIEGINDSKKLSESQREK 118 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ +I A+ IS +YID+ NI AT A+ A+ L+ L+D + +++ Sbjct: 119 LFSEIKEKALSYGISVIDEKYIDEVNILNATKRAMTEALSQLEPTADCILLDAVRL-DNI 177 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + +IKGDS+SLSIAAASI+AKVTRDRL+ KYP YGF +H GY T +H IK Sbjct: 178 STKQVPIIKGDSLSLSIAAASILAKVTRDRLLTEYDAKYPQYGFAAHKGYGTPQHISAIK 237 Query: 190 EKGPSCIHRLTF 201 + G IHRL+F Sbjct: 238 KFGLCPIHRLSF 249 >gi|288553081|ref|YP_003425016.1| ribonuclease H [Bacillus pseudofirmus OF4] gi|288544241|gb|ADC48124.1| ribonuclease H [Bacillus pseudofirmus OF4] Length = 260 Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 82/194 (42%), Positives = 114/194 (58%), Gaps = 8/194 (4%) Query: 17 MVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ E+ W VAG+DEVGRG LAGPV AA+IL + G+ DSKK+S +KRE Sbjct: 60 LMHEREAWQNGYNYVAGLDEVGRGPLAGPVTAAAVILPKDASLPGLTDSKKLSKEKREFF 119 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 E+I A+ S+ ID+ NI++AT A+ AV NL + P L+D + LP Sbjct: 120 VEEIKKQALAYSVVFVDADEIDRVNIYEATKLAMQRAVNNLDIQPDYLLLDAMKLANSLP 179 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++ +IKGD SL+IAA+S++AKV RD M K YP YGF HVGY T H + + Sbjct: 180 QES--LIKGDQKSLTIAASSVLAKVARDEYMVELEKVYPGYGFAKHVGYGTEVHLKAMNA 237 Query: 191 KGPSCIHRLTFRPL 204 G + HR +F+P+ Sbjct: 238 LGITKEHRKSFKPV 251 >gi|313754409|pdb|3O3F|A Chain A, T. Maritima Rnase H2 D107n In Complex With Nucleic Acid Substrate And Magnesium Ions gi|313754415|pdb|3O3H|A Chain A, T. Maritima Rnase H2 D107n In Complex With Nucleic Acid Substrate And Manganese Ions Length = 222 Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 86/188 (45%), Positives = 114/188 (60%), Gaps = 4/188 (2%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 +K VAG+DE GRG LAGPVV AA++L+ GINDSK++S KRE L ++I A Sbjct: 7 KKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKE--IEGINDSKQLSPAKRERLLDEIMEKA 64 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 + I AS + ID +NI AT A+ A+ENL V P L++G+ I +P ++KG Sbjct: 65 AVGIGIASPEEIDLYNIFNATKLAMNRALENLSVKPSFVLVNGKGIELSVP--GTCLVKG 122 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D S I AASI+AKV RDRLM H+ YP + F H GY T +H I++ G IHRL Sbjct: 123 DQKSKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKHKGYATKEHLNEIRKNGVLPIHRL 182 Query: 200 TFRPLRNL 207 +F P+ L Sbjct: 183 SFEPVLEL 190 >gi|326204815|ref|ZP_08194669.1| Ribonuclease H [Clostridium papyrosolvens DSM 2782] gi|325985027|gb|EGD45869.1| Ribonuclease H [Clostridium papyrosolvens DSM 2782] Length = 255 Score = 141 bits (355), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 85/177 (48%), Positives = 115/177 (64%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DE GRG LAGPVV AA++L G+NDSKK+S +RE+L+++I A+ IS Sbjct: 74 IAGVDEAGRGPLAGPVVAAAVVLPKGLTIEGVNDSKKLSEAQREKLFDEIKEKALSYGIS 133 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 +YID+ NI AT A+ A+ L I L+D S+ +++ + +IKGDS+SL Sbjct: 134 VVDEKYIDEVNILNATKMAMTEALNRLDPIADCILLDAVSL-DNISTKQVPIIKGDSLSL 192 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASI+AKVTRDRL+ KYP YGF +H GY T +H IK+ G IHRL+F Sbjct: 193 SIAAASILAKVTRDRLLMEYDAKYPQYGFAAHKGYGTPQHISAIKKFGLCPIHRLSF 249 >gi|325129110|gb|EGC51959.1| ribonuclease HII [Neisseria meningitidis N1568] Length = 194 Score = 141 bits (355), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 82/184 (44%), Positives = 113/184 (61%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83 AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L E I + A+ + Sbjct: 5 TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKNQAVAWHV 63 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 ++A+ + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS Sbjct: 64 AAATPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHLNIPAEAVVKGDSKI 123 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183 Query: 204 LRNL 207 +RNL Sbjct: 184 VRNL 187 >gi|254556724|ref|YP_003063141.1| ribonuclease HII [Lactobacillus plantarum JDM1] gi|254045651|gb|ACT62444.1| ribonuclease HII [Lactobacillus plantarum JDM1] Length = 255 Score = 141 bits (355), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 89/196 (45%), Positives = 121/196 (61%), Gaps = 8/196 (4%) Query: 17 MVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 M E++ W VAGIDEVGRG LAGPVV AA++LD + +NDSK+++ KKR L Sbjct: 58 MRLERDFWAHGGQYVAGIDEVGRGPLAGPVVTAAVVLDDHFDLLEVNDSKQLTAKKRAAL 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +I A+ + I A Q ID+ NI++AT A+ AV NL V P L+D +P +P Sbjct: 118 MPRILEEAVAVGIGVADAQQIDQLNIYEATRVAMAQAVRNLSVRPTRLLVDAMQVP--VP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +IKGD+ S SI+AASI+AKV RD LM + + YP Y F ++GY TAKH + Sbjct: 176 IEQTRLIKGDAKSASISAASIVAKVVRDHLMTMYDQVYPGYDFADNMGYGTAKHLAGLAS 235 Query: 191 KGPSCIHRLTFRPLRN 206 G + IHR +F P+RN Sbjct: 236 LGATPIHRQSFSPVRN 251 >gi|170017294|ref|YP_001728213.1| ribonuclease HII [Leuconostoc citreum KM20] gi|169804151|gb|ACA82769.1| Ribonuclease HII [Leuconostoc citreum KM20] Length = 266 Score = 141 bits (355), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 86/200 (43%), Positives = 122/200 (61%), Gaps = 5/200 (2%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 +R +FE + + K + VAG+DEVGRG LAGPVV AA+IL + + DSK+++ K Sbjct: 63 QRFNFERDYWL--KGVELVAGVDEVGRGPLAGPVVAAAVILPHDFNIVDVIDSKQVAQHK 120 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE+LYE I A+ I I S + ID+ NI++A A+ A+ NL P++ LID + Sbjct: 121 REQLYEIILDQAVSIGIGSVDAKTIDEINIYEAARQAMTEAINNLAPQPQALLIDAMQVY 180 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D+ Q+ IKGD+ S SI AASI+AKV RD++M K YP Y F + GY T KH Sbjct: 181 LDITQQSL--IKGDARSNSIGAASIVAKVIRDKMMTDYDKVYPGYDFAQNAGYGTKKHLA 238 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I + G + IHR +F+P+ + Sbjct: 239 GIDKLGVTPIHRRSFQPVHD 258 >gi|28378510|ref|NP_785402.1| ribonuclease HII [Lactobacillus plantarum WCFS1] gi|38258518|sp|Q88W20|RNH2_LACPL RecName: Full=Ribonuclease HII; Short=RNase HII gi|28271346|emb|CAD64251.1| ribonuclease HII [Lactobacillus plantarum WCFS1] Length = 255 Score = 141 bits (355), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 89/196 (45%), Positives = 121/196 (61%), Gaps = 8/196 (4%) Query: 17 MVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 M E++ W VAGIDEVGRG LAGPVV AA++LD + +NDSK+++ KKR L Sbjct: 58 MRLERDFWAHGGQYVAGIDEVGRGPLAGPVVTAAVVLDDHFDLLEVNDSKQLTAKKRAAL 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +I A+ + I A Q ID+ NI++AT A+ AV NL V P L+D +P +P Sbjct: 118 MPRILEEAVAVGIGVADAQQIDQLNIYEATRVAMAQAVRNLSVRPTRLLVDAMQVP--VP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +IKGD+ S SI+AASI+AKV RD LM + + YP Y F ++GY TAKH + Sbjct: 176 IEQTRLIKGDAKSASISAASIVAKVVRDHLMTMYDQVYPGYDFADNMGYGTAKHLAGLAS 235 Query: 191 KGPSCIHRLTFRPLRN 206 G + IHR +F P+RN Sbjct: 236 LGATPIHRQSFSPVRN 251 >gi|293605073|ref|ZP_06687465.1| ribonuclease HII [Achromobacter piechaudii ATCC 43553] gi|292816476|gb|EFF75565.1| ribonuclease HII [Achromobacter piechaudii ATCC 43553] Length = 202 Score = 141 bits (355), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 81/185 (43%), Positives = 110/185 (59%), Gaps = 2/185 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 AG+DE GRG LAG V AA+IL+P G+ DSK + RE L +I A+ I+ Sbjct: 17 TAGVDEAGRGPLAGAVYAAAVILNPARPIDGLADSKVLKAATREALALEIQEHALAWCIA 76 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS Q ID NI +AT+ A+ AV+ L V + AL+DG P+ L C VIKGD++ Sbjct: 77 SASVQEIDTLNILRATMLAMQRAVQGLSVPAQLALVDGNQAPK-LACTVQTVIKGDALVP 135 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AK RD + H YP Y F+ H GY TA H Q+++E GP HR +F P+ Sbjct: 136 AISAASILAKTARDADLVRLHGLYPQYAFNQHKGYGTALHLQMLREHGPCAEHRRSFAPI 195 Query: 205 RNLSV 209 + + Sbjct: 196 KAFGL 200 >gi|308388411|gb|ADO30731.1| ribonuclease HII [Neisseria meningitidis alpha710] gi|325131049|gb|EGC53774.1| ribonuclease HII [Neisseria meningitidis OX99.30304] gi|325137025|gb|EGC59621.1| ribonuclease HII [Neisseria meningitidis M0579] gi|325145388|gb|EGC67665.1| ribonuclease HII [Neisseria meningitidis M01-240013] gi|325202973|gb|ADY98427.1| ribonuclease HII [Neisseria meningitidis M01-240149] gi|325205284|gb|ADZ00737.1| ribonuclease HII [Neisseria meningitidis M04-240196] gi|325207229|gb|ADZ02681.1| ribonuclease HII [Neisseria meningitidis NZ-05/33] Length = 194 Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 83/184 (45%), Positives = 113/184 (61%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83 AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L E I + A+ + Sbjct: 5 TAGVDEAGRGPLVGSVFAAAVILPEIFDLP-GLTDSKKLSEKKRDALAEMIKNQAVAWHV 63 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 ++AS + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS Sbjct: 64 AAASPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHLNIPAEAVVKGDSKI 123 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183 Query: 204 LRNL 207 +RNL Sbjct: 184 VRNL 187 >gi|257089969|ref|ZP_05584330.1| ribonuclease HII [Enterococcus faecalis CH188] gi|256998781|gb|EEU85301.1| ribonuclease HII [Enterococcus faecalis CH188] Length = 255 Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 88/183 (48%), Positives = 122/183 (66%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KK+E LY +I A+ I + Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKQETLYNQIQEQAVAIGLG 133 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI++AT A+ A+++L P LID + D+P ++IKGD+ S+ Sbjct: 134 IADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLIDAMQL--DVPQPQESLIKGDARSI 191 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASIIAKVTRDRLM + YP YGF ++ GY T +H +++ G + IHR TF P+ Sbjct: 192 SIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKYGVTPIHRRTFAPI 251 Query: 205 RNL 207 +++ Sbjct: 252 KDM 254 >gi|289164797|ref|YP_003454935.1| ribonuclease HII [Legionella longbeachae NSW150] gi|288857970|emb|CBJ11830.1| putative ribonuclease HII [Legionella longbeachae NSW150] Length = 187 Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 88/185 (47%), Positives = 113/185 (61%), Gaps = 8/185 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG LAG VV AA+IL P G+ DSKK+S KKRE L I A+ + Sbjct: 7 IAGVDEVGRGPLAGAVVTAAVILKS---PIEGLADSKKLSAKKRELLSLLIKEQALAYAY 63 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSI 142 A ID NIH ATL A+ AVE L V P L+DG IP+ ++PC+A +++GD + Sbjct: 64 GRAEVDEIDALNIHHATLLAMQRAVEALPVKPDQVLVDGIHIPKLNIPCKA--IVQGDDL 121 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKV RD M YP YGF H GYPT H++ +K GPS IHR +F Sbjct: 122 IPEISAASILAKVFRDAEMEALDAIYPGYGFAGHKGYPTVAHREALKRLGPSQIHRKSFA 181 Query: 203 PLRNL 207 + +L Sbjct: 182 LIGSL 186 >gi|254672745|emb|CBA06746.1| Ribonuclease HII [Neisseria meningitidis alpha275] gi|325203313|gb|ADY98766.1| ribonuclease HII [Neisseria meningitidis M01-240355] Length = 194 Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 83/184 (45%), Positives = 113/184 (61%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83 AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L E I + A+ + Sbjct: 5 TAGVDEAGRGPLVGSVFAAAVILPEIFDLP-GLTDSKKLSEKKRDALAEMIKNQAVAWHV 63 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 ++AS + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS Sbjct: 64 AAASPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHLNIPAEAVVKGDSKI 123 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183 Query: 204 LRNL 207 +RNL Sbjct: 184 VRNL 187 >gi|189043612|sp|B1MZ17|RNH2_LEUCK RecName: Full=Ribonuclease HII; Short=RNase HII Length = 260 Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 85/200 (42%), Positives = 122/200 (61%), Gaps = 5/200 (2%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 +R +FE + ++ + VAG+DEVGRG LAGPVV AA+IL + + DSK+++ K Sbjct: 57 QRFNFERDYWLKGVEL--VAGVDEVGRGPLAGPVVAAAVILPHDFNIVDVIDSKQVAQHK 114 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE+LYE I A+ I I S + ID+ NI++A A+ A+ NL P++ LID + Sbjct: 115 REQLYEIILDQAVSIGIGSVDAKTIDEINIYEAARQAMTEAINNLAPQPQALLIDAMQVY 174 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D+ Q+ IKGD+ S SI AASI+AKV RD++M K YP Y F + GY T KH Sbjct: 175 LDITQQSL--IKGDARSNSIGAASIVAKVIRDKMMTDYDKVYPGYDFAQNAGYGTKKHLA 232 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I + G + IHR +F+P+ + Sbjct: 233 GIDKLGVTPIHRRSFQPVHD 252 >gi|227486581|ref|ZP_03916897.1| ribonuclease H [Anaerococcus lactolyticus ATCC 51172] gi|227235399|gb|EEI85414.1| ribonuclease H [Anaerococcus lactolyticus ATCC 51172] Length = 207 Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 80/177 (45%), Positives = 113/177 (63%), Gaps = 3/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AGIDEVGRG LAGPVV A+I+ N+ G+ DSKK+S KK L EKI + A+ +S Sbjct: 21 IAGIDEVGRGPLAGPVVTCAVIMKKNSHIEGVTDSKKLSRKKMLVLKEKILADALAVSYG 80 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A+ + ID+ NI +ATL A+ A+++L++ P LID I DLP ++KGD Sbjct: 81 FANSRKIDQINIRQATLQAMKDALDHLEIRPDIVLIDAERIDTDLP--QLNIVKGDLNEY 138 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +I+ ASI+AKV RD +M K YP YGF+++ GY T H Q +++ G + IHR +F Sbjct: 139 AISCASILAKVRRDDIMINFSKIYPGYGFETNFGYGTKAHYQGLEQHGETPIHRQSF 195 >gi|146318650|ref|YP_001198362.1| ribonuclease HII [Streptococcus suis 05ZYH33] gi|146320856|ref|YP_001200567.1| ribonuclease HII [Streptococcus suis 98HAH33] gi|253751769|ref|YP_003024910.1| ribonuclease HII [Streptococcus suis SC84] gi|253753593|ref|YP_003026734.1| ribonuclease HII [Streptococcus suis P1/7] gi|253755526|ref|YP_003028666.1| ribonuclease HII [Streptococcus suis BM407] gi|166226663|sp|A4W1C8|RNH2_STRS2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226665|sp|A4VV23|RNH2_STRSY RecName: Full=Ribonuclease HII; Short=RNase HII gi|145689456|gb|ABP89962.1| Ribonuclease HII [Streptococcus suis 05ZYH33] gi|145691662|gb|ABP92167.1| Ribonuclease HII [Streptococcus suis 98HAH33] gi|251816058|emb|CAZ51678.1| ribonuclease HII [Streptococcus suis SC84] gi|251817990|emb|CAZ55772.1| ribonuclease HII [Streptococcus suis BM407] gi|251819839|emb|CAR45820.1| ribonuclease HII [Streptococcus suis P1/7] gi|292558337|gb|ADE31338.1| Ribonuclease H [Streptococcus suis GZ1] gi|319758118|gb|ADV70060.1| ribonuclease HII [Streptococcus suis JS14] Length = 257 Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 85/201 (42%), Positives = 123/201 (61%), Gaps = 9/201 (4%) Query: 14 LEAMV-REKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LEAM+ EK+++ +AGIDEVGRG LAGPVV AA+IL +NDSKKI K Sbjct: 54 LEAMLFYEKSLYENGVEFIAGIDEVGRGPLAGPVVAAAVILPKGCKIRYLNDSKKIPKSK 113 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 E +Y+++ A+ + + ID+ NI++AT A+ A+ L P LID + Sbjct: 114 HEAIYQEVMERAVAVGVGIKDAALIDEVNIYEATKLAMLEALGKLSQKPDHLLIDAMKL- 172 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D P ++IKGD+ SLSIAAASI+AKVTRD++M K++ YGF + GY T +H + Sbjct: 173 -DTPIPQTSIIKGDANSLSIAAASIVAKVTRDKMMADYDKEFSGYGFAKNAGYGTTEHLE 231 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 + + G + IHR TF P++++ Sbjct: 232 GLNKLGITPIHRKTFEPIKSM 252 >gi|270156755|ref|ZP_06185412.1| ribonuclease HII [Legionella longbeachae D-4968] gi|269988780|gb|EEZ95034.1| ribonuclease HII [Legionella longbeachae D-4968] Length = 183 Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 88/185 (47%), Positives = 113/185 (61%), Gaps = 8/185 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG LAG VV AA+IL P G+ DSKK+S KKRE L I A+ + Sbjct: 3 IAGVDEVGRGPLAGAVVTAAVILKS---PIEGLADSKKLSAKKRELLSLLIKEQALAYAY 59 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSI 142 A ID NIH ATL A+ AVE L V P L+DG IP+ ++PC+A +++GD + Sbjct: 60 GRAEVDEIDALNIHHATLLAMQRAVEALPVKPDQVLVDGIHIPKLNIPCKA--IVQGDDL 117 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKV RD M YP YGF H GYPT H++ +K GPS IHR +F Sbjct: 118 IPEISAASILAKVFRDAEMEALDAIYPGYGFAGHKGYPTVAHREALKRLGPSQIHRKSFA 177 Query: 203 PLRNL 207 + +L Sbjct: 178 LIGSL 182 >gi|225572008|ref|ZP_03780872.1| hypothetical protein RUMHYD_00302 [Blautia hydrogenotrophica DSM 10507] gi|225040541|gb|EEG50787.1| hypothetical protein RUMHYD_00302 [Blautia hydrogenotrophica DSM 10507] Length = 251 Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 87/177 (49%), Positives = 116/177 (65%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDE GRG LAGPVV A+IL N +NDSKK+S +REELY +I A+ + + Sbjct: 71 ICGIDEAGRGPLAGPVVAGAVILQKNCGILYLNDSKKLSAARREELYRQIVEEAVAVGVG 130 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS Q ID+ NI +AT +A+ A++ L++ P+ L D +IP + C +IKGD+ S Sbjct: 131 YASPQRIDEINILQATYEAMREAIQKLKIKPQILLNDAVTIP-GVSCPQVPIIKGDAKSA 189 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASI+AKVTRDRLM + P+YGF SH GY A H + +K+ GPS IHR +F Sbjct: 190 SIAAASIVAKVTRDRLMVEYDRLMPEYGFASHKGYGAAAHIEALKKYGPSPIHRKSF 246 >gi|225028010|ref|ZP_03717202.1| hypothetical protein EUBHAL_02279 [Eubacterium hallii DSM 3353] gi|224954724|gb|EEG35933.1| hypothetical protein EUBHAL_02279 [Eubacterium hallii DSM 3353] Length = 251 Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 83/183 (45%), Positives = 114/183 (62%), Gaps = 4/183 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG LAGPVV A++L + INDSKK+S KKREEL++ I A+ + I Sbjct: 71 ICGIDEVGRGPLAGPVVAGAVVLPKGSRILYINDSKKLSAKKREELFDIIKEEAVSVGIG 130 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID+ NI +AT +A+ A+ NL V P L D IP + + +IKGD+ S+ Sbjct: 131 MASPERIDEINILQATYEAMRQAIANLSVKPELLLNDAVMIP-GVDIKQVPIIKGDAKSI 189 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI AASI+AKV RD +M K +P Y F S+ GY + +H + + GP IHR +F L Sbjct: 190 SIGAASIMAKVYRDHMMEEYDKVFPGYDFASNKGYGSKEHIEALHRLGPCPIHRCSF--L 247 Query: 205 RNL 207 +N+ Sbjct: 248 KNI 250 >gi|315023047|gb|EFT36060.1| Ribonuclease HII [Riemerella anatipestifer RA-YM] Length = 194 Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 78/176 (44%), Positives = 111/176 (63%), Gaps = 1/176 (0%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSA 86 G DE GRG L GPVV AA+ILD N INDSKK+S K R EL I ++A+ +I+ Sbjct: 15 GCDEAGRGCLCGPVVAAAVILDENFEQNLINDSKKLSFKTRNELDLYIKNNALDYAIAEL 74 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSI 146 S +ID+HNI A++ A++ A++ L + P L+DG +IKGDS LSI Sbjct: 75 SPAFIDEHNILNASIHAMHLALDKLAIRPELILVDGNRFKPYPFTPHECIIKGDSKVLSI 134 Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 AAASI+AK RD +M H++YP+YG++ + GY T +H++ + + GP+ HR +FR Sbjct: 135 AAASILAKNYRDHIMIKLHEEYPEYGWNKNFGYATKQHREALNKLGPTIYHRKSFR 190 >gi|119510873|ref|ZP_01629997.1| Ribonuclease HII/HIII [Nodularia spumigena CCY9414] gi|119464482|gb|EAW45395.1| Ribonuclease HII/HIII [Nodularia spumigena CCY9414] Length = 244 Score = 140 bits (354), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 88/186 (47%), Positives = 116/186 (62%), Gaps = 7/186 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI- 80 VAGIDEVGRGAL GPVV AA+IL +P I DSKK+S +R +L ++I A Sbjct: 57 VAGIDEVGRGALFGPVVAAAVILPACALPKLMAAEIKDSKKLSSSRRTQLSQQICDLATD 116 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 +I AS ID+ NI +ATL A+ AV L+V P+ L+DG +DL ++KGD Sbjct: 117 WNIGFASSAEIDQINILQATLLAMRRAVLKLKVQPQLCLVDGNQPIKDLLIPQETIVKGD 176 Query: 141 SISLSIAAASIIAKVTRDRL-MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 SL+IAAASI+AKV RD L MR+A KYP Y + GY + KH +++ GPS +HR Sbjct: 177 ERSLTIAAASIVAKVWRDELVMRLAL-KYPLYNLKDNKGYGSQKHLVALQKYGPSRLHRK 235 Query: 200 TFRPLR 205 +FRP + Sbjct: 236 SFRPCQ 241 >gi|300767456|ref|ZP_07077368.1| ribonuclease HII [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180667|ref|YP_003924795.1| ribonuclease HII [Lactobacillus plantarum subsp. plantarum ST-III] gi|300495275|gb|EFK30431.1| ribonuclease HII [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046158|gb|ADN98701.1| ribonuclease HII [Lactobacillus plantarum subsp. plantarum ST-III] Length = 255 Score = 140 bits (354), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 89/196 (45%), Positives = 121/196 (61%), Gaps = 8/196 (4%) Query: 17 MVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 M E++ W VAGIDEVGRG LAGPVV AA++LD + +NDSK+++ KKR L Sbjct: 58 MRLERDFWAHGGQYVAGIDEVGRGPLAGPVVTAAVVLDDHFDLLEVNDSKQLTAKKRAAL 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +I A+ + I A Q ID+ NI++AT A+ AV NL V P L+D +P +P Sbjct: 118 MPRILEEAVAVGIGVADAQQIDQLNIYEATRVAMAQAVRNLSVRPTRLLVDAMQVP--VP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +IKGD+ S SI+AASI+AKV RD LM + + YP Y F ++GY TAKH + Sbjct: 176 IEQTRLIKGDAKSASISAASIVAKVVRDHLMTMYDQVYPGYDFADNMGYGTAKHLAGLAS 235 Query: 191 KGPSCIHRLTFRPLRN 206 G + IHR +F P+RN Sbjct: 236 LGATPIHRQSFSPVRN 251 >gi|187778966|ref|ZP_02995439.1| hypothetical protein CLOSPO_02561 [Clostridium sporogenes ATCC 15579] gi|187772591|gb|EDU36393.1| hypothetical protein CLOSPO_02561 [Clostridium sporogenes ATCC 15579] Length = 269 Score = 140 bits (354), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 85/188 (45%), Positives = 117/188 (62%), Gaps = 6/188 (3%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEK 74 R N + +AG+DEVGRG LAGP+V AA++LD N + I DSKK+S KKREEL Sbjct: 78 RYGNSYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMHRILNIKDSKKLSEKKREELDII 137 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI +I+ ++ ID+ I + + + AVE L V P L DG ++ +L + Sbjct: 138 IREKAISYNIALVDNRTIDERGIAWSNNEVLKRAVEGLNVKPDLVLSDGYAVK-NLNIRN 196 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGDS S+SIA+ASIIAKV RD +M+ K+ YGF+ + GY T +H Q IK+ G Sbjct: 197 EFIIKGDSKSVSIASASIIAKVYRDNMMKEYSKELSMYGFNHNAGYGTEEHIQAIKKYGT 256 Query: 194 SCIHRLTF 201 S IHR++F Sbjct: 257 SKIHRMSF 264 >gi|313888218|ref|ZP_07821892.1| ribonuclease HII [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845908|gb|EFR33295.1| ribonuclease HII [Peptoniphilus harei ACS-146-V-Sch2b] Length = 205 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 87/203 (42%), Positives = 117/203 (57%), Gaps = 11/203 (5%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E EK + GIDEVGRG L G VV A+I+ G+NDSKK+S KKRE L Sbjct: 4 YNFEEEYYEKGYKNICGIDEVGRGCLFGDVVSCAVIMPRGKYIEGVNDSKKLSPKKREAL 63 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL------QVIPRSALIDGRS 124 Y KI SAI + I A+ IDK NI AT ++ +A+ENL ++ LID + Sbjct: 64 YLKILESAIAVGIGRANADIIDKVNIRMATHISMINALENLRDSENNKIEADCVLIDAET 123 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 I + +A ++KGD SIA ASI+AKV RD L + ++YP YG + H GY T H Sbjct: 124 IETGIFQKA--IVKGDESCYSIACASIVAKVYRDNLCKKWAEEYPQYGLEKHKGYATKYH 181 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 ++ +K GPS +HR TF L+N+ Sbjct: 182 REALKAYGPSDMHRKTF--LKNI 202 >gi|251782421|ref|YP_002996723.1| ribonuclease HII [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391050|dbj|BAH81509.1| ribonuclease HII [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 256 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/197 (42%), Positives = 121/197 (61%), Gaps = 6/197 (3%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + +K +AGIDEVGRG LAGPVV A +IL G+NDSKKI K E +Y+ Sbjct: 62 EKALYKKGYQAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKAKHETIYQA 121 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLP 130 + A+ I I +Q ID+ NI++AT A+ A++ L+ P LID ++ +P Sbjct: 122 VKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTLDIAIP 181 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 Q+ +IKGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T +H ++ Sbjct: 182 QQS--IIKGDANSLSIAAASIVAKVTRDQMMANYERIFPGYGFAKNSGYGTKEHLDGLRT 239 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 240 HGITPIHRKSFEPIKSM 256 >gi|254513857|ref|ZP_05125918.1| ribonuclease HII [gamma proteobacterium NOR5-3] gi|219676100|gb|EED32465.1| ribonuclease HII [gamma proteobacterium NOR5-3] Length = 204 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/181 (45%), Positives = 119/181 (65%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 + G+DEVGRG LAG VV AA++L+ + G+ DSKK++ ++RE L E++ A +++ Sbjct: 19 IVGVDEVGRGPLAGDVVAAAVVLNSADPIDGLADSKKLTARRREALSEQLHLRAHGVALG 78 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A+ + ID NI +A+L A++ AV+ L + P L+DGR +P + AVIKGDS Sbjct: 79 LATPEEIDDLNILQASLLAMWRAVDALGMTPDLVLVDGRQLPR-WNHPSIAVIKGDSRVP 137 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AKV RDR M H ++P YGFD+H GYPTA H ++E G S +HR +F P+ Sbjct: 138 QIAAASIVAKVARDRYMCEQHLRWPMYGFDAHKGYPTAAHLAALREHGVSPLHRRSFAPV 197 Query: 205 R 205 R Sbjct: 198 R 198 >gi|159896757|ref|YP_001543004.1| ribonuclease H [Herpetosiphon aurantiacus ATCC 23779] gi|238687141|sp|A9B6H3|RNH2_HERA2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|159889796|gb|ABX02876.1| Ribonuclease H [Herpetosiphon aurantiacus ATCC 23779] Length = 207 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/197 (43%), Positives = 120/197 (60%), Gaps = 14/197 (7%) Query: 20 EKNMWP-----VAGIDEVGRGALAGPVVVAAI------ILDPNNIPFGINDSKKISHKKR 68 E+ +W VAG+DEVGRG AGPVV AA+ + DP + GINDSK +S + R Sbjct: 8 EQQLWRNGARIVAGVDEVGRGCWAGPVVAAAVSFPTHLLNDPVALA-GINDSKTLSAEAR 66 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + + ++I A I + S ID I +AT A+ HAV +L +P +ID +PE Sbjct: 67 QAMAQQIRHLASGIGLGVVSAHLIDLFGIAEATKWAMMHAVLSLPSLPDGLVIDWVKLPE 126 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP ++ KGD+IS+S+AAASIIAKV RD LM ++ P YG+ +H GY TA+HQ+ Sbjct: 127 -LPLLQRSLPKGDAISISVAAASIIAKVYRDNLMHEYDQRDPRYGWAAHKGYGTAQHQRA 185 Query: 188 IKEKGPSCIHRLTFRPL 204 + GPS +HR +F+PL Sbjct: 186 LAAHGPSGLHRRSFKPL 202 >gi|237738859|ref|ZP_04569340.1| ribonuclease HII [Fusobacterium sp. 2_1_31] gi|229423962|gb|EEO39009.1| ribonuclease HII [Fusobacterium sp. 2_1_31] Length = 217 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 84/183 (45%), Positives = 114/183 (62%), Gaps = 7/183 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84 V G+DE GRG LAGPVV AA+IL + INDSKK++ KKRE+LY+ I ++ +++ Sbjct: 15 VIGVDEAGRGPLAGPVVAAAVILKQYSEELDEINDSKKLTEKKREKLYDIILNNFNVAVG 74 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPCQAFAVIKG 139 AS + IDK NI A A+ A+++L+ L+DG ++ + V+KG Sbjct: 75 IASVEEIDKLNILNADFLAMRRALKDLEKFHEVDKDYIVLVDGNLKIKEYEGKQLPVVKG 134 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHR 198 D+ SLSIAAASIIAKVTRDR+M+ KYPDY F+ + GY T KH + IK KG +HR Sbjct: 135 DAKSLSIAAASIIAKVTRDRIMKDLGLKYPDYDFEKNKGYGTKKHVEAIKTKGVLKNVHR 194 Query: 199 LTF 201 F Sbjct: 195 KVF 197 >gi|148544008|ref|YP_001271378.1| ribonuclease HII [Lactobacillus reuteri DSM 20016] gi|184153402|ref|YP_001841743.1| ribonuclease HII [Lactobacillus reuteri JCM 1112] gi|227364921|ref|ZP_03848966.1| ribonuclease H [Lactobacillus reuteri MM2-3] gi|325682454|ref|ZP_08161971.1| ribonuclease HII [Lactobacillus reuteri MM4-1A] gi|166991068|sp|A5VJL7|RNH2_LACRD RecName: Full=Ribonuclease HII; Short=RNase HII gi|229564285|sp|B2G731|RNH2_LACRJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|148531042|gb|ABQ83041.1| RNase HII [Lactobacillus reuteri DSM 20016] gi|183224746|dbj|BAG25263.1| ribonuclease HII [Lactobacillus reuteri JCM 1112] gi|227070068|gb|EEI08446.1| ribonuclease H [Lactobacillus reuteri MM2-3] gi|324978293|gb|EGC15243.1| ribonuclease HII [Lactobacillus reuteri MM4-1A] Length = 256 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/194 (41%), Positives = 116/194 (59%), Gaps = 3/194 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F+ E E +AG+DEVGRG LAGPVV A+IL+ + G+ DSK+++ +RE L Sbjct: 60 FKYEKYYWENGCQYIAGMDEVGRGPLAGPVVTCAVILNADFDLIGVTDSKQLTRHERENL 119 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y +I A+ +SI+ ID+ NI+ AT DA+ AV +L P ++D + D+P Sbjct: 120 YLRIVDEAVEVSIAVNDAPVIDQMNIYAATQDAMIRAVNHLHHRPDHLIVDAVPLAIDIP 179 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD S+S+AAASI+AK RD LMR YP YGF ++GY T +H +++ Sbjct: 180 --QTTLIKGDQKSISVAAASIVAKEYRDHLMRDYDYVYPGYGFAQNMGYGTKEHLAGLEK 237 Query: 191 KGPSCIHRLTFRPL 204 G + IHR +F P+ Sbjct: 238 MGATPIHRRSFNPV 251 >gi|158313006|ref|YP_001505514.1| ribonuclease HII [Frankia sp. EAN1pec] gi|238686844|sp|A8L6C6|RNH2_FRASN RecName: Full=Ribonuclease HII; Short=RNase HII gi|158108411|gb|ABW10608.1| Ribonuclease H [Frankia sp. EAN1pec] Length = 240 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/196 (41%), Positives = 117/196 (59%), Gaps = 10/196 (5%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN--DSKKISHKKRE 69 F E + + + PVAG+DE GRGA AGP+VVAA++LD + DSK ++ + RE Sbjct: 15 FGYERALVRRGLGPVAGVDEAGRGACAGPMVVAAVVLDQRRLGLLRRLADSKLLTERVRE 74 Query: 70 ELYEKITSS----AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 E++ + ++ + I I +A ID++ +H A + + AV L V PR L DG ++ Sbjct: 75 EVHADVLAAAAAVSTIVIPAAE---IDRNGVHVANIMGMRRAVAVLDVRPRYVLTDGFAV 131 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 L ++ AVIKGD + IAAAS++AKVTRDR+MR HK+YP+Y F H GY TA H Sbjct: 132 A-GLGAESLAVIKGDLMVGCIAAASVVAKVTRDRIMRSLHKRYPEYDFAQHKGYVTAAHT 190 Query: 186 QVIKEKGPSCIHRLTF 201 + GP HRL++ Sbjct: 191 AAMTRYGPCEQHRLSY 206 >gi|89898164|ref|YP_515274.1| ribonuclease HII [Chlamydophila felis Fe/C-56] gi|123483565|sp|Q255A9|RNH2_CHLFF RecName: Full=Ribonuclease HII; Short=RNase HII gi|89331536|dbj|BAE81129.1| ribonuclease HII [Chlamydophila felis Fe/C-56] Length = 209 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 91/194 (46%), Positives = 118/194 (60%), Gaps = 4/194 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E V + +AG+DEVGRG LAGPVV A IL I G+NDSKK+S K+R + + Sbjct: 16 FEEEVFSEGFSIIAGVDEVGRGPLAGPVVAGACILPRGKIFAGVNDSKKLSPKERGRMRD 75 Query: 74 KITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + + I S + ID+ NI +AT +A+ A+ NL V P L+DG +P +PC Sbjct: 76 ILVNDPDVYYGIGVVSVERIDEINILEATKEAMAVAIANLPVHPDFLLVDGLHLPHKIPC 135 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGDS SIAAASIIAK RD LMR H++YPDYGFD H GY TA H +K Sbjct: 136 KK--IIKGDSKVASIAAASIIAKEYRDDLMRELHQRYPDYGFDKHKGYGTAAHLAALKAF 193 Query: 192 GPSCIHRLTFRPLR 205 GP HR +F P+R Sbjct: 194 GPCDCHRKSFAPIR 207 >gi|330813681|ref|YP_004357920.1| ribonuclease HII [Candidatus Pelagibacter sp. IMCC9063] gi|327486776|gb|AEA81181.1| ribonuclease HII [Candidatus Pelagibacter sp. IMCC9063] Length = 199 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 78/182 (42%), Positives = 114/182 (62%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + G+DEVGRG LAGPVV AA+IL+P+ INDSKKIS KKR ++ KI + + +I Sbjct: 14 IIGVDEVGRGPLAGPVVAAAVILNPDICLKEINDSKKISKKKRNNVFFKIINHSKFAIGF 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 +S + I+K+NI +A+L A+ AV +L + + L+DG + + +KGD S Sbjct: 74 SSVEEIEKYNILQASLTAMKRAVTSLGTLKSTILVDGIHSFDKKNKKILTFVKGDEQFPS 133 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 IAAASI+AKV RD M I KKY YG++ + GY T++H +K+ G + +HR F P+ Sbjct: 134 IAAASILAKVLRDNYMCILAKKYKGYGWEKNSGYGTSEHMGAMKKFGLTPLHRKNFAPVH 193 Query: 206 NL 207 + Sbjct: 194 KM 195 >gi|227513336|ref|ZP_03943385.1| ribonuclease HII [Lactobacillus buchneri ATCC 11577] gi|227083209|gb|EEI18521.1| ribonuclease HII [Lactobacillus buchneri ATCC 11577] Length = 255 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/194 (42%), Positives = 117/194 (60%), Gaps = 8/194 (4%) Query: 20 EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E++ W VAG+DEVGRG LAGPVV A IL + +NDSK+++ + R L + Sbjct: 63 ERSFWHRGVNYVAGVDEVGRGPLAGPVVACATILPRDFDLIQVNDSKQLTPEIRARLAPQ 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI I + ++ ID+ NI++AT A+ AV NL P ++D IP +P Sbjct: 123 IKREAISIGLGLVDNKGIDRLNIYEATRVAMKQAVNNLTQQPDEIIVDAMQIP--VPIHQ 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGD+ S+S++AASI+AKV RD LM ++YP+Y F + GY TAKH +K+ G Sbjct: 181 TRLIKGDAKSISVSAASIVAKVYRDNLMDQYAQQYPEYDFRHNAGYGTAKHLSALKKYGA 240 Query: 194 SCIHRLTFRPLRNL 207 + IHR TF P++N Sbjct: 241 TPIHRKTFAPIKNF 254 >gi|223938652|ref|ZP_03630542.1| Ribonuclease H [bacterium Ellin514] gi|223892640|gb|EEF59111.1| Ribonuclease H [bacterium Ellin514] Length = 245 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/200 (41%), Positives = 115/200 (57%), Gaps = 15/200 (7%) Query: 20 EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-------NDSKKISHKK 67 E+ +W VAG+DE G G LAGPVV AA++ + + G+ NDSK++ + Sbjct: 14 ERELWQQGTTLVAGVDEAGCGPLAGPVVAAAVLFPCSWLEAGLFSKLRGLNDSKQLDEDQ 73 Query: 68 REELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 RE+ Y I + I +I+ + ID+ NI +A + A++ L P+ L+DG I Sbjct: 74 REKFYNIIVNHPEIRHAIAVIDVEMIDRINIRQAAWRGMNQALDQLNPKPQHVLVDGLKI 133 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 + LP A+++GD S SIAAAS++AKVTRDRLM+ K+YP YGF H GY T KH Sbjct: 134 -KWLPYAQTALVQGDGKSYSIAAASVLAKVTRDRLMQDYDKQYPGYGFAEHKGYGTPKHL 192 Query: 186 QVIKEKGPSCIHRLTFRPLR 205 I +GP IHR +F P R Sbjct: 193 AAINAQGPCLIHRKSFAPFR 212 >gi|307264856|ref|ZP_07546418.1| Ribonuclease H [Thermoanaerobacter wiegelii Rt8.B1] gi|306920114|gb|EFN50326.1| Ribonuclease H [Thermoanaerobacter wiegelii Rt8.B1] Length = 242 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 84/190 (44%), Positives = 115/190 (60%), Gaps = 6/190 (3%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE---EL 71 E + + N+ +AG+DE GRG L GPVV A +IL INDSKK+S KKRE E+ Sbjct: 49 ENQLYQLNLNFIAGVDEAGRGPLVGPVVAACVILPKEVFIPEINDSKKLSEKKREVLSEV 108 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +K+ +S I I IDK NI AT A+ A+ +Q L+D +IP+ + Sbjct: 109 IKKVATSYAIGIVDCEE--IDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQ-IEI 165 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A++KGDS S+SIAAASI+AKV RD++M+ HK YP Y F+ + GY T +H + +K+ Sbjct: 166 NQKAIVKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKY 225 Query: 192 GPSCIHRLTF 201 GP IHR TF Sbjct: 226 GPCPIHRKTF 235 >gi|261391728|emb|CAX49177.1| ribonuclease HII (RNase HII) [Neisseria meningitidis 8013] Length = 194 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/184 (45%), Positives = 112/184 (60%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKI-TSSAIISI 83 AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L E I +A + Sbjct: 5 TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDTLAEMIKNQAAAWHV 63 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 S+A+ + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS Sbjct: 64 SAATPEEIASLNILHATMLAMKRAVDGLVVHPEKIFIDGNRIPEHLNIPAEAVVKGDSKI 123 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183 Query: 204 LRNL 207 +RNL Sbjct: 184 VRNL 187 >gi|17231824|ref|NP_488372.1| ribonuclease HII [Nostoc sp. PCC 7120] gi|39932442|sp|Q8YP68|RNH2_ANASP RecName: Full=Ribonuclease HII; Short=RNase HII gi|17133468|dbj|BAB76031.1| ribonuclease HII [Nostoc sp. PCC 7120] Length = 225 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/183 (45%), Positives = 115/183 (62%), Gaps = 5/183 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI- 80 VAG+DEVGRGAL GPVV A++IL + P I DSKK+SH +R +L ++I++ AI Sbjct: 37 VAGVDEVGRGALFGPVVAASVILPASAFPHLMTAEIKDSKKLSHSRRVQLAQQISTLAID 96 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I A+ ID+ NI +ATL A+ +V+ L++ P LIDG +DL ++KGD Sbjct: 97 WRIGYATTAEIDRINILQATLLAMKRSVKKLKLQPILCLIDGNQPVQDLLMLQQTIVKGD 156 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 SL+IAAASI+AKV RD L++ KYP Y S+ GY + KH + + G S +HR + Sbjct: 157 ERSLNIAAASIMAKVWRDDLIQRLATKYPMYDLKSNKGYGSKKHLLALAQHGASPLHRQS 216 Query: 201 FRP 203 FRP Sbjct: 217 FRP 219 >gi|254785187|ref|YP_003072615.1| ribonuclease HII [Teredinibacter turnerae T7901] gi|237686020|gb|ACR13284.1| ribonuclease HII [Teredinibacter turnerae T7901] Length = 191 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 85/183 (46%), Positives = 115/183 (62%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 +AG+DEVGRG LAG VV AA++L N+ G+ DSKK+S KKRE L+ +I A I+ Sbjct: 3 IAGVDEVGRGPLAGDVVAAAVVLGENHGIVGLADSKKLSEKKREALFVQIQQQAECFCIA 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID+ NI +A+L A+ AVE L++ P L+DG +P A A++KGDS Sbjct: 63 RASVAEIDEINILQASLLAMKRAVEGLKIEPEHVLVDGNRLPR-WRYSAEAIVKGDSKVE 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKVTRDR M +YP YGF H GYPT H + G + IHR ++ P+ Sbjct: 122 AISAASILAKVTRDREMVAFEAQYPGYGFAGHKGYPTKLHMDALARLGVTPIHRTSYAPV 181 Query: 205 RNL 207 + L Sbjct: 182 KAL 184 >gi|330685675|gb|EGG97316.1| ribonuclease HII [Staphylococcus epidermidis VCU121] Length = 256 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/186 (43%), Positives = 118/186 (63%), Gaps = 9/186 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR----EELYEKITSSAII 81 + GIDEVGRG LAGPVV A+IL+P + G+NDSKK+S K R ++L + +T A Sbjct: 74 ICGIDEVGRGPLAGPVVACAVILNPGHRYLGLNDSKKVSAKNRAVLNQQLIDGVTDYAYG 133 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 +SA ID+ NI++AT A+ A++ L+V P LID ++ ++ ++IKGD+ Sbjct: 134 IATSAE---IDEMNIYQATRLAMQRAIDQLKVQPTHLLIDAMTLDNEI--NQTSIIKGDA 188 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 S+SIAAASI+AK RD M+ K+YP Y F+++VGY T H + I + G HR TF Sbjct: 189 KSVSIAAASIMAKEYRDNYMKDIAKQYPGYDFENNVGYGTKAHLEGIAQNGVISEHRKTF 248 Query: 202 RPLRNL 207 P++++ Sbjct: 249 EPIKSI 254 >gi|255067201|ref|ZP_05319056.1| ribonuclease HII [Neisseria sicca ATCC 29256] gi|255048569|gb|EET44033.1| ribonuclease HII [Neisseria sicca ATCC 29256] Length = 197 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/188 (42%), Positives = 110/188 (58%), Gaps = 1/188 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 KN + +AG+DE GRG L G V AA+IL P+ G+ DSKK+S KKR+ L I A+ Sbjct: 2 KNSFLIAGVDEAGRGPLVGSVFAAAVILPPSYHLPGLTDSKKLSEKKRDTLAVLIKEQAL 61 Query: 81 I-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ A Q I + NI AT+ A+ AV L + P IDG +P+ L A AV+KG Sbjct: 62 AWCVAQADPQEIFELNILHATMLAMSRAVHGLAIKPDKVFIDGNRVPKALGVDAEAVVKG 121 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS + I+AAS++AK RD M ++YP YGFD H GY TA+H + ++ G HR Sbjct: 122 DSKIMEISAASVLAKTARDAEMYALAERYPQYGFDKHKGYGTAQHLEALQRYGVLPEHRR 181 Query: 200 TFRPLRNL 207 F P++ L Sbjct: 182 DFAPVKAL 189 >gi|312143696|ref|YP_003995142.1| Ribonuclease H [Halanaerobium sp. 'sapolanicus'] gi|311904347|gb|ADQ14788.1| Ribonuclease H [Halanaerobium sp. 'sapolanicus'] Length = 265 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 87/192 (45%), Positives = 121/192 (63%), Gaps = 4/192 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 L+ + V GIDE GRG LAGPVV AA++LD +G++DSKK+S +KRE+L E Sbjct: 69 LQEKLESNGYQAVIGIDEAGRGPLAGPVVAAAVLLDSTKPIYGLDDSKKLSREKREKLLE 128 Query: 74 KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVEN----LQVIPRSALIDGRSIPEDL 129 +I A + I AS + IDK+NI +AT A+ AV+N L+ P L+DG ++ DL Sbjct: 129 EIKKKAKVGIGQASSKEIDKYNIREATFAAMKRAVKNLLPQLEEKPDLLLVDGNTVIPDL 188 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 AVI GD+ SIAAASI AKV+RD+++ ++YP+Y F S+ GY TA+H ++ Sbjct: 189 KIDQKAVIDGDAKINSIAAASIAAKVSRDQIIFEYAEEYPEYNFKSNKGYGTAEHIAALE 248 Query: 190 EKGPSCIHRLTF 201 E G S IHR +F Sbjct: 249 EHGSSPIHRKSF 260 >gi|157363760|ref|YP_001470527.1| ribonuclease HII [Thermotoga lettingae TMO] gi|189043671|sp|A8F5M9|RNH2_THELT RecName: Full=Ribonuclease HII; Short=RNase HII gi|157314364|gb|ABV33463.1| Ribonuclease H [Thermotoga lettingae TMO] Length = 224 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 90/192 (46%), Positives = 124/192 (64%), Gaps = 8/192 (4%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 ++N V G+DE GRG LAGPVV AA+IL+ + + DSK+++ +KREEL+ +I +SA Sbjct: 13 KQNFGTVIGVDEAGRGCLAGPVVAAAVILE---VQLDVFDSKQLTAQKREELFLQIMNSA 69 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 + I A+ + ID +NI AT A+ A+ +L L+DG+S+ +L Q ++KG Sbjct: 70 EVGIGIATPEEIDLYNIFNATKIAMNRALASLNKKDAYVLVDGKSL--NLSQQGVCIVKG 127 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKK-YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 D S SIAAASI+AKV RDR+M +AH + YP YGF H GY T H I+E GP+ HR Sbjct: 128 DEKSASIAAASIVAKVLRDRIM-VAHDRIYPCYGFSKHKGYGTVHHLNAIREFGPTVFHR 186 Query: 199 LTFRP-LRNLSV 209 L+F P L NLSV Sbjct: 187 LSFSPVLSNLSV 198 >gi|217076334|ref|YP_002334050.1| ribonuclease HII [Thermosipho africanus TCF52B] gi|226736825|sp|B7IF45|RNH2_THEAB RecName: Full=Ribonuclease HII; Short=RNase HII gi|217036187|gb|ACJ74709.1| ribonuclease HII [Thermosipho africanus TCF52B] Length = 220 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/184 (43%), Positives = 118/184 (64%), Gaps = 6/184 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 VAG+DE GRG L GPVV AA+IL N G++DSKK++ +KRE+L+ +I + +IS Sbjct: 3 VAGVDEAGRGPLFGPVVAAAVIL--NEEIDGLDDSKKLTSRKREKLFLEIIKKSYFAISI 60 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A+ IDK NI AT A+ A+E L ++ A +DG+++ P + ++KGDS+ Sbjct: 61 ATADEIDKFNILHATEIAMDRALERLRKKINFDIAFVDGKNLNLKFPFKC--IVKGDSLV 118 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RDR++ KK+ Y + H GYPT H ++IKE G + +HRLT++P Sbjct: 119 KEISAASILAKVVRDRIIVSYAKKFSSYMLEKHKGYPTQLHLKLIKEHGLTPLHRLTYKP 178 Query: 204 LRNL 207 + L Sbjct: 179 VMEL 182 >gi|304436821|ref|ZP_07396787.1| ribonuclease H [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370193|gb|EFM23852.1| ribonuclease H [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 259 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 89/197 (45%), Positives = 120/197 (60%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E E+ VAG+DE GRG LAGPV VAA+IL + ++DSKK+S K REEL Sbjct: 52 YAYERCAAERGHCIVAGVDEAGRGPLAGPVAVAAVILPQEYLLLRLDDSKKLSEKVREEL 111 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YE+I S A+ + + ID+ NI +AT +Y AV L P+ LID ++P L Sbjct: 112 YERIVSDAVSYHVELIDAETIDRMNILEATRKGMYDAVAALLPTPQEVLIDAVALPH-LR 170 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +++KGD+ S SIAAASI+AKVTRDRLM + YP YGF H GY T +H I+ Sbjct: 171 MASQSIVKGDAKSASIAAASILAKVTRDRLMLTYDEAYPVYGFAKHKGYGTQEHIDAIRN 230 Query: 191 KGPSCIHRLTFRPLRNL 207 G +HR TF P+R++ Sbjct: 231 YGICPLHRKTFEPIRSM 247 >gi|255069909|ref|XP_002507036.1| ribonuclease HII [Micromonas sp. RCC299] gi|226522311|gb|ACO68294.1| ribonuclease HII [Micromonas sp. RCC299] Length = 262 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 84/195 (43%), Positives = 120/195 (61%), Gaps = 7/195 (3%) Query: 20 EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E+ W V G+DE GRG LAGPVV AA + + + INDSK+++ ++REE+YE+ Sbjct: 59 ERRCWSAGKKIVCGVDEAGRGPLAGPVVAAACVFPEDLVIDAINDSKQMTEEEREEVYEE 118 Query: 75 ITSS--AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 + ++ I S+ H+ ID+ NI +AT+ A+ +VE L LIDG +P L + Sbjct: 119 LMANDQVIKSVCVIDHERIDEINILEATMQAMAKSVEGLSTRADWVLIDGNRVPPPLIDR 178 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A A++KGD+ S+ IAAAS++AKVTRDR+M H +YP YGFD H GY H I + G Sbjct: 179 AEAIVKGDAKSVCIAAASVLAKVTRDRMMVKIHDEYPVYGFDQHKGYGVKAHMDAIHKHG 238 Query: 193 PSCIHRLTFRPLRNL 207 P HR TF P++ + Sbjct: 239 PCPYHRKTFAPMKYM 253 >gi|313892616|ref|ZP_07826203.1| ribonuclease HII [Dialister microaerophilus UPII 345-E] gi|313119013|gb|EFR42218.1| ribonuclease HII [Dialister microaerophilus UPII 345-E] Length = 264 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 87/197 (44%), Positives = 130/197 (65%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + +E+ ++ M V GIDEVGRG LAGPV VAA+IL P+ +NDSKK+S +KRE + Sbjct: 56 YAVESEFYKQGMQYVVGIDEVGRGPLAGPVTVAAVILKPHWFVENLNDSKKVSKEKREII 115 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +KI A+ ISI+ S + ID NI++AT+ A+Y AV+ L++ P++ ++D + +P Sbjct: 116 SKKIHEEALAISITDLSVEEIDTLNIYQATMLAMYQAVKKLEIKPQAVIVDAMPLHFQVP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 C++ I GDS S S+AAASI+AKV RD +M K YP Y F+ + GY T KH + I E Sbjct: 176 CKSL--IHGDSKSASVAAASIVAKVHRDHIMDEYAKIYPGYDFEDNKGYGTKKHMEAIYE 233 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR ++ P++++ Sbjct: 234 LGITPIHRKSYEPVKSI 250 >gi|124515656|gb|EAY57165.1| ribonuclease HII [Leptospirillum rubarum] gi|206602288|gb|EDZ38770.1| Ribonuclease HII [Leptospirillum sp. Group II '5-way CG'] Length = 228 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 91/210 (43%), Positives = 116/210 (55%), Gaps = 11/210 (5%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISH 65 P +LE +K VAG+DEVGRGALAGPVV AA+IL P + F GI DSK +S Sbjct: 4 PQADLEREFYKKGFLRVAGVDEVGRGALAGPVVAAAVIL-PMPLEFFENIGIRDSKLLSP 62 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KR L +++ S S+ ++ I+ NI +ATL A+ AVE L P L+DGR Sbjct: 63 SKRVALSDRLRSLLFSWSVGESTVSEINALNIRRATLLAMKRAVEGLPEFPDILLVDGRE 122 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 I DL C+ + GD LSIAAASIIAKV RD +M Y YG + GY TA+H Sbjct: 123 IVPDLVCKQESFTGGDRRILSIAAASIIAKVYRDNMMSELDNAYAGYGLAENKGYGTAQH 182 Query: 185 QQVIKEKGPSCIHRLTF-----RPLRNLSV 209 + + +G S IHR F P R S+ Sbjct: 183 RDGLLLRGVSSIHRAVFCKTFLEPFRKKSI 212 >gi|308068634|ref|YP_003870239.1| ribonuclease HII [Paenibacillus polymyxa E681] gi|305857913|gb|ADM69701.1| Ribonuclease HII (RNase HII) [Paenibacillus polymyxa E681] Length = 215 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 88/195 (45%), Positives = 113/195 (57%), Gaps = 11/195 (5%) Query: 20 EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 EK W +AGIDEVGRG L G VV AA+IL + G++DSKK++ KKRE YE Sbjct: 15 EKKCWEQSCERIAGIDEVGRGCLFGDVVAAAVILPVGELLEGVDDSKKLTDKKREAYYEL 74 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI + + ID NI +A A+ A+E L V P L+D + +P Sbjct: 75 IMEKAIAVGVGYVDAHTIDDINIKQAARLAMKQAIEALHVSPDYLLVDAEKVDVSIP--Q 132 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK-KYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S SIAAASIIAKVTRDRL + KYP+YG H GY T H++ I G Sbjct: 133 LSIIKGDANSQSIAAASIIAKVTRDRLCKGEWDAKYPEYGIGIHKGYATKLHREQILALG 192 Query: 193 PSCIHRLTFRPLRNL 207 P+ +HR +F L NL Sbjct: 193 PTEMHRRSF--LGNL 205 >gi|241760682|ref|ZP_04758774.1| ribonuclease HII [Neisseria flavescens SK114] gi|241318863|gb|EER55389.1| ribonuclease HII [Neisseria flavescens SK114] Length = 230 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/183 (45%), Positives = 111/183 (60%), Gaps = 3/183 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L + I A+ SI+ Sbjct: 40 AGVDEAGRGPLVGSVFAAAVILPEHFDLP-GLTDSKKLSEKKRDILAQLIKEQAVAWSIA 98 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A I + NI AT+ A+ +VE L V P IDG +P+DL A AV+KGDS + Sbjct: 99 FADPDEILQLNILHATMAAMKRSVEGLSVTPDKVWIDGNRVPKDLNVPAEAVVKGDSKII 158 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AAS++AK RD M K+YP YGFD H GY TA+H +K+ G HR F P+ Sbjct: 159 EISAASVLAKTARDAEMYELAKRYPQYGFDCHKGYGTAQHLAALKQYGVLPEHRRDFAPV 218 Query: 205 RNL 207 + L Sbjct: 219 KTL 221 >gi|332967913|gb|EGK07003.1| ribonuclease HII [Kingella kingae ATCC 23330] Length = 219 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 78/184 (42%), Positives = 110/184 (59%), Gaps = 1/184 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85 AG+DE GRG L G V AA++L + G+ DSKK+S KKR+ L +I AI S+++ Sbjct: 30 AGVDEAGRGCLVGSVFAAAVMLPTDYALHGLTDSKKLSEKKRDALAVEIKQQAIAWSVAA 89 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS I ++NI +ATL A+ A+ L P IDG +P++L A AV++GDS + Sbjct: 90 ASPAEIAQYNILQATLLAMTRAIAGLAKQPAFVWIDGNCVPKNLTMPAQAVVQGDSKIAT 149 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AK RD M H++YP YGF H GY TA H +++ G HR F P++ Sbjct: 150 ISAASILAKTARDAEMYALHERYPQYGFAQHKGYGTAAHLAALQQFGALAEHRADFAPVK 209 Query: 206 NLSV 209 + V Sbjct: 210 AVLV 213 >gi|114328522|ref|YP_745679.1| ribonuclease HII [Granulibacter bethesdensis CGDNIH1] gi|122326524|sp|Q0BQZ6|RNH2_GRABC RecName: Full=Ribonuclease HII; Short=RNase HII gi|114316696|gb|ABI62756.1| ribonuclease HII [Granulibacter bethesdensis CGDNIH1] Length = 219 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 85/188 (45%), Positives = 112/188 (59%), Gaps = 7/188 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKKREELYEKITS--SA 79 VAG+DEVGRG LAGPVV AA++L + P I+DSKK+ R+ + + + Sbjct: 24 VAGVDEVGRGPLAGPVVAAAVLLPASGFPAHLAGLIDDSKKLDAAARDRAFAALLAEPGI 83 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 I I +AS I + NI A++ A+ AVE L IP AL+DG P LPC A V+ G Sbjct: 84 TIGIGAASVTEIGRLNILHASMLAMRRAVERLPTIPDLALVDGNRAPA-LPCAARCVVGG 142 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D+ LSIAAASIIAKV RDR M ++YP YG++ + GYPT H+ + E GP+ HR Sbjct: 143 DAKCLSIAAASIIAKVVRDRAMARLARRYPVYGWERNAGYPTPAHRAGLTEFGPTPHHRT 202 Query: 200 TFRPLRNL 207 F +R L Sbjct: 203 AFGLVRQL 210 >gi|56478865|ref|YP_160454.1| ribonuclease HII [Aromatoleum aromaticum EbN1] gi|81356536|sp|Q5NZG1|RNH2_AZOSE RecName: Full=Ribonuclease HII; Short=RNase HII gi|56314908|emb|CAI09553.1| Ribonuclease HII [Aromatoleum aromaticum EbN1] Length = 204 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/183 (44%), Positives = 108/183 (59%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 + G+DE GRG LAG VV AA+ILDP G+NDSKK++ + RE L I AI +++ Sbjct: 10 ICGVDEAGRGPLAGSVVAAAVILDPARPIDGLNDSKKLTERARERLAPLIRERAIAWAVA 69 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID+ NI AT+ A+ AV L +P +DG P L A AV++GD+ Sbjct: 70 EASVEEIDRLNILHATMLAMQRAVAALGCVPDLVRVDGNRCPP-LAVPAEAVVRGDATVP 128 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AK RD M +YP YGF SH GYPT +H ++ G HR +F P+ Sbjct: 129 AIAAASILAKTVRDAQMIALDGEYPAYGFASHKGYPTPEHFIALRRHGVVACHRRSFAPV 188 Query: 205 RNL 207 R L Sbjct: 189 REL 191 >gi|15676119|ref|NP_273250.1| ribonuclease HII [Neisseria meningitidis MC58] gi|11387100|sp|Q9K1G1|RNH2_NEIMB RecName: Full=Ribonuclease HII; Short=RNase HII gi|7225412|gb|AAF40649.1| ribonuclease HII [Neisseria meningitidis MC58] gi|316985719|gb|EFV64665.1| ribonuclease HII family protein [Neisseria meningitidis H44/76] gi|325135118|gb|EGC57745.1| ribonuclease HII [Neisseria meningitidis M13399] gi|325199404|gb|ADY94859.1| ribonuclease HII [Neisseria meningitidis H44/76] Length = 194 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/184 (44%), Positives = 113/184 (61%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L E I + A+ + Sbjct: 5 TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKNQAVEWHV 63 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 ++AS + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS Sbjct: 64 AAASPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKI 123 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M +++P YGFD H GY T +H + +++ G HR F P Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALEKYGVLPEHRRDFAP 183 Query: 204 LRNL 207 +RNL Sbjct: 184 VRNL 187 >gi|297620937|ref|YP_003709074.1| Ribonuclease HII [Waddlia chondrophila WSU 86-1044] gi|297376238|gb|ADI38068.1| Ribonuclease HII [Waddlia chondrophila WSU 86-1044] Length = 254 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 87/199 (43%), Positives = 116/199 (58%), Gaps = 5/199 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 H+E EA R AGIDE GRG LAGPVV +A IL G+NDSKK++ +R+ Sbjct: 58 HYENEA--RRMGYSHPAGIDEAGRGPLAGPVVASACILPAGYHLSGLNDSKKLTPLQRKR 115 Query: 71 LYEKITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +E +T + I I A+H+ ID N+ +AT A+ AV+ L+ P LID + E Sbjct: 116 FFEVLTQDPNVCIGIGIATHEEIDTVNVLEATKLAMCKAVDMLKPQPDFLLIDAVKLSEQ 175 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 P +IKGD +IAAAS+IAK TRDR+M K+P YGF H GY T H++ I Sbjct: 176 -PIPFLNLIKGDCRVQAIAAASVIAKETRDRIMDEYDVKWPMYGFGRHKGYGTEAHREAI 234 Query: 189 KEKGPSCIHRLTFRPLRNL 207 K GP IHR TF P++++ Sbjct: 235 KRHGPCPIHRKTFEPIKSM 253 >gi|159470503|ref|XP_001693396.1| predicted protein [Chlamydomonas reinhardtii] gi|158282899|gb|EDP08650.1| predicted protein [Chlamydomonas reinhardtii] Length = 197 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/193 (43%), Positives = 119/193 (61%), Gaps = 10/193 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELYEKITSSAI 80 V G DE GRG LAGPVV A +L + +P G+NDSK I+ +RE ++E +T+ + Sbjct: 1 VGGADEAGRGPLAGPVVAAVCVLPHQSDTSWQMPAGLNDSKAITEDEREAIFEALTTDSR 60 Query: 81 I--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA---LIDGRSIPEDLPCQAFA 135 + ++S H+ ID+ NI +A L A+ ++ ++ L+DG +P+DLPC A A Sbjct: 61 VRWAVSIIDHETIDRINILQAALSAMRNSALDVHGQAPGLDYLLVDGNKLPKDLPCPARA 120 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V+KGD+ IAAASIIAKVTRDRLM K+YP YGF H GY +H I GPS Sbjct: 121 VVKGDATVACIAAASIIAKVTRDRLMLELDKQYPQYGFAQHKGYGVPQHMAAIHTHGPSA 180 Query: 196 IHRLTFRPLRNLS 208 +HR +F P+++++ Sbjct: 181 VHRRSFEPVKSMT 193 >gi|167037678|ref|YP_001665256.1| ribonuclease HII [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116093|ref|YP_004186252.1| Ribonuclease H [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856512|gb|ABY94920.1| Ribonuclease H [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929184|gb|ADV79869.1| Ribonuclease H [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 242 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/188 (44%), Positives = 114/188 (60%), Gaps = 2/188 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + + N+ +AG+DE GRG L GPVV A +IL INDSKK+S +KRE L E Sbjct: 49 ENQLYQLNLNFIAGVDEAGRGPLVGPVVAACVILPKEVFIPEINDSKKLSEEKREVLSEV 108 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI +I + IDK NI AT A+ A+ +Q L+D +IP+ + Sbjct: 109 IKKVAISYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQ-IEINQ 167 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 A++KGDS S+SIAAASI+AKV RD++M+ HK YP Y F+ + GY T +H + +K+ GP Sbjct: 168 KAIVKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYGP 227 Query: 194 SCIHRLTF 201 IHR TF Sbjct: 228 CPIHRKTF 235 >gi|73541556|ref|YP_296076.1| ribonuclease HII [Ralstonia eutropha JMP134] gi|97189223|sp|Q470F1|RNH2_RALEJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|72118969|gb|AAZ61232.1| RNase HII [Ralstonia eutropha JMP134] Length = 218 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/186 (42%), Positives = 114/186 (61%), Gaps = 6/186 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + G+DE GRG LAGPV AA++ DP + G+ DSK ++ KRE LY+KI A+ I Sbjct: 25 LCGVDEAGRGPLAGPVYAAAVVFDPAKPMLRGLADSKVLTASKREALYDKICERALGWHI 84 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLPCQAFAVIKGD 140 + A+ + ID NI A++ A+ AV+ L V P +DG P+ +P A++KGD Sbjct: 85 AFATVEEIDTLNILHASMLAMQRAVQGLAEKGVTPDLVQVDGNRCPQ-VPFPVEAIVKGD 143 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+ +I+AASI+AKV RDR + H+ YP YGFD+H GYPT +H + + G + HR + Sbjct: 144 SLVKAISAASILAKVARDRELLTLHEVYPQYGFDAHSGYPTPQHLAALAQFGATPHHRRS 203 Query: 201 FRPLRN 206 F P+R Sbjct: 204 FAPVRE 209 >gi|167040339|ref|YP_001663324.1| ribonuclease HII [Thermoanaerobacter sp. X514] gi|300914423|ref|ZP_07131739.1| Ribonuclease H [Thermoanaerobacter sp. X561] gi|307724341|ref|YP_003904092.1| Ribonuclease H [Thermoanaerobacter sp. X513] gi|166854579|gb|ABY92988.1| Ribonuclease H [Thermoanaerobacter sp. X514] gi|300889358|gb|EFK84504.1| Ribonuclease H [Thermoanaerobacter sp. X561] gi|307581402|gb|ADN54801.1| Ribonuclease H [Thermoanaerobacter sp. X513] Length = 242 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/188 (44%), Positives = 114/188 (60%), Gaps = 2/188 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + + N+ +AG+DE GRG L GPVV A +IL INDSKK+S +KRE L E Sbjct: 49 ENQLYQLNLNFIAGVDEAGRGPLVGPVVAACVILPKEVFIPEINDSKKLSEEKREVLSEV 108 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI +I + IDK NI AT A+ A+ +Q L+D +IP+ + Sbjct: 109 IKKVAISYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQ-IEINQ 167 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 A++KGDS S+SIAAASI+AKV RD++M+ HK YP Y F+ + GY T +H + +K+ GP Sbjct: 168 KAIVKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYGP 227 Query: 194 SCIHRLTF 201 IHR TF Sbjct: 228 CPIHRKTF 235 >gi|325143205|gb|EGC65545.1| ribonuclease HII [Neisseria meningitidis 961-5945] gi|325197479|gb|ADY92935.1| ribonuclease HII [Neisseria meningitidis G2136] Length = 194 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/184 (44%), Positives = 112/184 (60%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83 AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L E I + A+ + Sbjct: 5 TAGVDEAGRGPLVGSVFAAAVILPEIFDLP-GLTDSKKLSEKKRDALAEMIKNQAVAWHV 63 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 ++A + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS Sbjct: 64 AAAGPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKI 123 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183 Query: 204 LRNL 207 +RNL Sbjct: 184 VRNL 187 >gi|172040491|ref|YP_001800205.1| hypothetical protein cur_0811 [Corynebacterium urealyticum DSM 7109] gi|171851795|emb|CAQ04771.1| unnamed protein product [Corynebacterium urealyticum DSM 7109] Length = 241 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/182 (43%), Positives = 110/182 (60%), Gaps = 10/182 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSA---- 79 VAG+DE GRGA GP+ +A+ IL + +P G+NDSKK++ K+RE L+ IT A Sbjct: 41 VAGVDEAGRGACCGPITIASCILPDHGVPELAGLNDSKKLTPKRRERLFGAITEHAVAYE 100 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 I+ I +A ID+ I A ++ +Y V L V P L D +PE L C+ ++KG Sbjct: 101 IVHIPAAE---IDQRGIQYANINGMYRVVAGLGVEPDVVLTDAVHLPE-LACEHAPLVKG 156 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D++S +I+AASI+AKV+RDRLM +KYP YG H GY TAKH ++ G HR Sbjct: 157 DALSPAISAASILAKVSRDRLMVEMAEKYPGYGLAGHKGYGTAKHMAAVRLHGACPEHRY 216 Query: 200 TF 201 T+ Sbjct: 217 TY 218 >gi|319788756|ref|YP_004090071.1| Ribonuclease H [Ruminococcus albus 7] gi|315450623|gb|ADU24185.1| Ribonuclease H [Ruminococcus albus 7] Length = 204 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/190 (45%), Positives = 118/190 (62%), Gaps = 3/190 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + REK V G DE GRG LAG V AA++ D + + GINDSKK++ KKRE+L+ Sbjct: 5 EFDDIYREK-YEVVCGCDEAGRGPLAGDVFAAAVVFDKDTVIEGINDSKKLTAKKREKLF 63 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I A SI A+ I+ NI + A+ +VE +++ P LIDG P DL C Sbjct: 64 DEIIEKAQDFSIQCATVAEIEDINILNCAMLAMKRSVEAMKIKPNVCLIDGNKTP-DLEC 122 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A AV+KGD+ S +IAAASI+AKV RDR M +KYP++ F+ H GY T H Q+I + Sbjct: 123 DAIAVVKGDAQSQAIAAASILAKVARDRYMLQMAEKYPEWQFEKHKGYGTKLHYQMIDKY 182 Query: 192 GPSCIHRLTF 201 G S IHR +F Sbjct: 183 GESPIHRPSF 192 >gi|222153077|ref|YP_002562254.1| ribonuclease HII [Streptococcus uberis 0140J] gi|254807991|sp|B9DS69|RNH2_STRU0 RecName: Full=Ribonuclease HII; Short=RNase HII gi|222113890|emb|CAR42059.1| ribonuclease HII [Streptococcus uberis 0140J] Length = 257 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/197 (41%), Positives = 120/197 (60%), Gaps = 6/197 (3%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E ++ ++ +AGIDEVGRG LAGPVV A +IL + G+NDSKKI K +++ Sbjct: 62 EKVLYQEGFSLIAGIDEVGRGPLAGPVVAACVILPIDCKIKGLNDSKKIPKSKHLSIFQA 121 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLP 130 I A+ I I + ID NI++AT A+ A++N++ P LID ++ +P Sbjct: 122 IQERALGIGIGIVDNHVIDDINIYQATKVAMIEAIKNIKGDVTEPDYLLIDAMTLETPIP 181 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 Q+ +IKGD+ S+SIAAASI+AKVTRDRLM K +P Y F + GY T H +K+ Sbjct: 182 QQS--IIKGDANSMSIAAASIVAKVTRDRLMMDYEKAFPGYDFAKNAGYGTTSHLNGLKQ 239 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 240 FGVTPIHRTSFEPIKSM 256 >gi|91775869|ref|YP_545625.1| RNase HII [Methylobacillus flagellatus KT] gi|123078856|sp|Q1H153|RNH2_METFK RecName: Full=Ribonuclease HII; Short=RNase HII gi|91709856|gb|ABE49784.1| RNase HII [Methylobacillus flagellatus KT] Length = 193 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 78/183 (42%), Positives = 112/183 (61%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 + G+DE GRG LAG V AA+ILDP + G+ DSK +S KKR+ L +I A+ +I+ Sbjct: 8 ICGVDEAGRGPLAGAVYAAAVILDPQHPIPGLADSKTLSEKKRDMLAIEIKQHALAWTIA 67 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S S + ID+ NI +A+L A+ A++ L ++P L+DG P + A ++KGDS Sbjct: 68 SCSAEEIDEINILQASLLAMKRAIDQLTIMPTQVLVDGLHCP-GIAIPAQGIVKGDSKVQ 126 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H +YP Y F H GYPTA H +++ E G IHR ++ P+ Sbjct: 127 EIAAASILAKTARDHEMVEMHARYPQYDFAKHKGYPTAHHLRLLAEHGACEIHRRSYAPV 186 Query: 205 RNL 207 + + Sbjct: 187 KKV 189 >gi|126434540|ref|YP_001070231.1| ribonuclease HII [Mycobacterium sp. JLS] gi|166226627|sp|A3PXW3|RNH2_MYCSJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|126234340|gb|ABN97740.1| RNase HII [Mycobacterium sp. JLS] Length = 239 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/200 (41%), Positives = 116/200 (58%), Gaps = 10/200 (5%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE+ + + PVAG+DEVGRGA AGP+VVAA +L PN + ++DSKK+ K+RE L Sbjct: 20 LESALYRNGLGPVAGVDEVGRGACAGPLVVAACVLGPNRLESLAALDDSKKLGEKERERL 79 Query: 72 YEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + I A ++ I S +D+ +H A ++ + AV L V P L DG +P Sbjct: 80 FPVIRRYALAYHVVFIPSGE---VDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP- 135 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP + V+ GD+ + IAAAS++AKV+RDRLM +++P YGF H GY T H Sbjct: 136 GLPMPSLPVVGGDAAAACIAAASVLAKVSRDRLMVAMEREHPGYGFAEHKGYSTPAHTAA 195 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 + E GP HR +F +R L Sbjct: 196 LAELGPCAQHRYSFINVRRL 215 >gi|84502790|ref|ZP_01000903.1| ribonuclease HII [Oceanicola batsensis HTCC2597] gi|84388773|gb|EAQ01643.1| ribonuclease HII [Oceanicola batsensis HTCC2597] Length = 188 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/179 (46%), Positives = 117/179 (65%) Query: 29 IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASH 88 +DEVGRG LAGPV AA+ILD IP G+NDSKK++ +R L E++ + A+IS++ AS Sbjct: 1 MDEVGRGPLAGPVTAAAVILDATCIPVGLNDSKKLTEPRRLALLEELRTCAMISVAHASV 60 Query: 89 QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAA 148 + ID NI +A+ A+ AV L V P LIDG IP L A AVI GD+ LSIAA Sbjct: 61 EEIDDLNILRASHLAMERAVAGLPVRPAHLLIDGNMIPRGLDIPATAVIGGDARCLSIAA 120 Query: 149 ASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 ASI AK+ RD +MR +++ YG+D++VGYP+ H ++ G + HR +F+P+ N+ Sbjct: 121 ASIAAKIARDTIMRDLAQQFAGYGWDTNVGYPSKSHISALQSIGVTPHHRKSFKPVHNI 179 >gi|256750728|ref|ZP_05491613.1| Ribonuclease H [Thermoanaerobacter ethanolicus CCSD1] gi|256750311|gb|EEU63330.1| Ribonuclease H [Thermoanaerobacter ethanolicus CCSD1] Length = 242 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/188 (44%), Positives = 113/188 (60%), Gaps = 2/188 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + + N+ +AG+DE GRG L GPVV A +I + INDSKK+S +KRE L E Sbjct: 49 ENQLYQLNLNFIAGVDEAGRGPLVGPVVAACVIFPKDVFIPEINDSKKLSEEKREVLSEV 108 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI S + IDK NI AT A+ A+ +Q L+D +IP+ + Sbjct: 109 IKKVAISYSFGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQ-IEINQ 167 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 A++KGDS S+SIAAASI+AKV RD++M+ HK YP Y F+ + GY T +H + +K+ GP Sbjct: 168 KAIVKGDSKSISIAAASILAKVERDKMMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYGP 227 Query: 194 SCIHRLTF 201 IHR TF Sbjct: 228 CPIHRKTF 235 >gi|257094431|ref|YP_003168072.1| ribonuclease HII [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046955|gb|ACV36143.1| Ribonuclease H [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 198 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 91/187 (48%), Positives = 121/187 (64%), Gaps = 6/187 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84 V GIDE GRG LAGPVV AA+ILDP+ G+NDSKK+S ++RE L E I + +++ Sbjct: 10 VCGIDEAGRGPLAGPVVAAAVILDPSRPIAGLNDSKKLSARRREVLAEAIRARALAWAVA 69 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQ----VIPRSALIDGRSIPEDLPCQAFAVIKGD 140 +AS + ID+ NI +A+L A+ AV L P AL+DG+ P+ LPC A A++ GD Sbjct: 70 AASVEEIDRINILQASLLAMQRAVAALAGGHGAWPVHALVDGQHCPQ-LPCSAEAIVGGD 128 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 SIAAASI+AK +RD MR H YP YGFD H+GYPTA H + ++E G S HR + Sbjct: 129 GRIASIAAASILAKTSRDAGMRELHATYPQYGFDRHMGYPTAFHLRALEEHGVSPHHRRS 188 Query: 201 FRPLRNL 207 + P+ L Sbjct: 189 YAPVARL 195 >gi|326389492|ref|ZP_08211059.1| Ribonuclease H [Thermoanaerobacter ethanolicus JW 200] gi|325994497|gb|EGD52922.1| Ribonuclease H [Thermoanaerobacter ethanolicus JW 200] Length = 242 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/188 (44%), Positives = 114/188 (60%), Gaps = 2/188 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + + N+ +AG+DE GRG L GP+V A +IL INDSKK+S +KRE L E Sbjct: 49 ENQLYQLNLNFIAGVDEAGRGPLVGPIVAACVILPKEVFIPEINDSKKLSEEKREVLSEV 108 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI +I + IDK NI AT A+ A+ +Q L+D +IP+ + Sbjct: 109 IKKVAISYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQ-IEINQ 167 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 A++KGDS S+SIAAASI+AKV RD++M+ HK YP Y F+ + GY T +H + +K+ GP Sbjct: 168 KAIVKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYGP 227 Query: 194 SCIHRLTF 201 IHR TF Sbjct: 228 CPIHRKTF 235 >gi|108798940|ref|YP_639137.1| ribonuclease HII [Mycobacterium sp. MCS] gi|119868055|ref|YP_938007.1| ribonuclease HII [Mycobacterium sp. KMS] gi|123070330|sp|Q1BAK3|RNH2_MYCSS RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226628|sp|A1UEF9|RNH2_MYCSK RecName: Full=Ribonuclease HII; Short=RNase HII gi|108769359|gb|ABG08081.1| RNase HII [Mycobacterium sp. MCS] gi|119694144|gb|ABL91217.1| RNase HII [Mycobacterium sp. KMS] Length = 239 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/197 (40%), Positives = 115/197 (58%), Gaps = 4/197 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE+ + + PVAG+DEVGRGA AGP+VVAA +L PN + ++DSKK+ K+RE L Sbjct: 20 LESALYRNGLGPVAGVDEVGRGACAGPLVVAACVLGPNRLESLAALDDSKKLGEKERERL 79 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ + + +D+ +H A ++ + AV L V P L DG +P LP Sbjct: 80 FPVIRRYALAYHVVFIPSEEVDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP-GLP 138 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + V+ GD+ + IAAAS++AKV+RDRLM +++P YGF H GY T H + E Sbjct: 139 MPSLPVVGGDAAAACIAAASVLAKVSRDRLMVAMEREHPGYGFAEHKGYSTPAHTAALAE 198 Query: 191 KGPSCIHRLTFRPLRNL 207 GP HR +F +R L Sbjct: 199 LGPCAQHRYSFINVRRL 215 >gi|224541328|ref|ZP_03681867.1| hypothetical protein CATMIT_00488 [Catenibacterium mitsuokai DSM 15897] gi|224525765|gb|EEF94870.1| hypothetical protein CATMIT_00488 [Catenibacterium mitsuokai DSM 15897] Length = 211 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/201 (40%), Positives = 124/201 (61%), Gaps = 8/201 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 ER +E EA R + G+DE GRG +AGP+VV +I + INDSKK++ KK Sbjct: 5 ERLKYENEA--RAAGYSRILGVDEAGRGPMAGPLVVGGVIFPEDFYDERINDSKKLTEKK 62 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE LY+ I +A+ I S + +D N+++A+ + VE+L+ P L D + Sbjct: 63 REALYDLIIENALAYQIEVLSVEEVDTLNVYEASRTGMKRIVESLE--PDFTLSDAMPLG 120 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D+P ++IKGD+ S+SI AASI+AKVTRDR+M+ K+YP+YGF+ H GY T H++ Sbjct: 121 -DIPH--LSIIKGDAKSISIGAASILAKVTRDRIMKEYGKQYPEYGFEKHKGYVTKAHKE 177 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 +++ G + IHR +F P++ + Sbjct: 178 ALEKYGVTPIHRRSFAPVQKV 198 >gi|217974046|ref|YP_002358797.1| ribonuclease HII [Shewanella baltica OS223] gi|254807987|sp|B8E7Q2|RNH2_SHEB2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|217499181|gb|ACK47374.1| Ribonuclease H [Shewanella baltica OS223] Length = 210 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 86/188 (45%), Positives = 114/188 (60%), Gaps = 6/188 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S K+RE L+++I A+ + Sbjct: 20 IAGVDEVGRGPLVGDVVTAAVILDPNKPISGLNDSKKLSEKRREALFDEICDKALCYQVG 79 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-----EDLPCQAFAVIKG 139 AS ID+ NI AT+ A+ AV L + P L+DG P + ++IKG Sbjct: 80 RASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRSPIFVAHNGAGLTSHSIIKG 139 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D + SI+AASIIAKVTRDR M + YP YGF H GYPT H + I E G +R Sbjct: 140 DGLIASISAASIIAKVTRDREMDVLDAAYPQYGFAKHRGYPTKAHFEAIAEHGVFDQYRK 199 Query: 200 TFRPLRNL 207 +F+P++ L Sbjct: 200 SFKPVKAL 207 >gi|296136565|ref|YP_003643807.1| Ribonuclease H [Thiomonas intermedia K12] gi|295796687|gb|ADG31477.1| Ribonuclease H [Thiomonas intermedia K12] Length = 214 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/184 (45%), Positives = 118/184 (64%), Gaps = 4/184 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG DEVGRG AGPVV AA++LDP + G+ DSK +S ++REEL +I + ++ SI+ Sbjct: 18 IAGCDEVGRGPWAGPVVAAAVVLDPAHPIAGLADSKLLSARRREELDAQIRAHSLGWSIA 77 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 +S + ID+ NI +ATL A+ AV L L+DG P+ +PC+A ++ GD+ Sbjct: 78 ESSVEEIDQRNILQATLLAMQRAVAALPCKIDLLLVDGNQTPQVAMPCRA--IVGGDAAE 135 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASIIAKV RDRLM ++YP YGF+ H GY TA H+ + GP HR +F P Sbjct: 136 PAISAASIIAKVYRDRLMAELAQRYPGYGFERHSGYGTAAHRAALLTLGPCAEHRRSFAP 195 Query: 204 LRNL 207 +R L Sbjct: 196 IRRL 199 >gi|167949995|ref|ZP_02537069.1| ribonuclease HII [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 162 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/157 (50%), Positives = 103/157 (65%), Gaps = 2/157 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84 VAG+DEVGRG LAGPVV AA+ILDP G+ DSKK+S K+RE+L E+I T S ++ Sbjct: 7 VAGVDEVGRGPLAGPVVAAAVILDPAQPIEGLADSKKLSEKRREQLAEQIRTQSLAWALG 66 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI +A+L A+ AVE L + P+ L+DG+ P+ L C A+I GDS Sbjct: 67 RAEVEEIDQINILQASLLAMRRAVEALALTPQRVLVDGKHAPQ-LACPVEAIIGGDSSVE 125 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 +I+AASIIA V RDR M + +P YG H GYPT Sbjct: 126 AISAASIIANVARDREMVELDQHHPGYGLARHKGYPT 162 >gi|90415807|ref|ZP_01223740.1| Ribonuclease HII (RNase HII) [marine gamma proteobacterium HTCC2207] gi|90332181|gb|EAS47378.1| Ribonuclease HII (RNase HII) [marine gamma proteobacterium HTCC2207] Length = 204 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/181 (45%), Positives = 110/181 (60%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG LAG VV AA+IL N+ G+ DSK +S ++RE LY ITS A+ S++ Sbjct: 13 LAGVDEVGRGPLAGDVVTAAVILPANHGIEGLADSKALSSRQRENLYADITSRALCWSVA 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S ID+ NI +ATL A+ AV L P +DG +P+ + AV+KGD Sbjct: 73 RCSVAEIDRFNILQATLMAMRRAVMGLSQQPDYVAVDGNRLPQ-WEYRGEAVVKGDGRVE 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKV RD M+ YP YGF ++ GY T +H + + G + IHR TF P+ Sbjct: 132 CISAASIIAKVVRDAEMKAFDITYPGYGFAANKGYGTPQHLEALSRIGATPIHRRTFAPV 191 Query: 205 R 205 R Sbjct: 192 R 192 >gi|78485616|ref|YP_391541.1| ribonuclease H [Thiomicrospira crunogena XCL-2] gi|97189437|sp|Q31G56|RNH2_THICR RecName: Full=Ribonuclease HII; Short=RNase HII gi|78363902|gb|ABB41867.1| RNase HII [Thiomicrospira crunogena XCL-2] Length = 207 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/183 (43%), Positives = 114/183 (62%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + G+DEVGRG L G VV AA+IL P + DSKK+S KRE + +I AI I+ Sbjct: 20 IVGVDEVGRGPLVGDVVAAAVIL-PKGCELLLKDSKKLSESKRELIAHQIQQEAIDFCIA 78 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 +AS ID NI AT+ A+ AVE L + L+DG P ++P + A++KGD Sbjct: 79 TASPDEIDSLNILHATMLAMKRAVEGLNNPIKKVLVDGNRCP-NVPYECEAIVKGDGKVP 137 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M++ H+ YP+YGFD+H GYPT H + + + G +R +F+P+ Sbjct: 138 VISAASILAKVHRDQQMQVLHEAYPEYGFDAHKGYPTKLHLEKLSQHGLIPGYRRSFKPV 197 Query: 205 RNL 207 +N+ Sbjct: 198 KNI 200 >gi|29840412|ref|NP_829518.1| ribonuclease HII [Chlamydophila caviae GPIC] gi|33301616|sp|Q822M7|RNH2_CHLCV RecName: Full=Ribonuclease HII; Short=RNase HII gi|29834761|gb|AAP05396.1| ribonuclease HII [Chlamydophila caviae GPIC] Length = 212 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 90/196 (45%), Positives = 121/196 (61%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E V + +AG+DEVGRG LAGPVV A IL I G+NDSKK++ K+R ++ + Sbjct: 18 FEEEVYGEGFSIIAGVDEVGRGPLAGPVVAGACILPRGKIFAGVNDSKKLTPKERGKIRD 77 Query: 74 KITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + + I S + ID+ NI +AT +A+ A+ NL V P LIDG +P +PC Sbjct: 78 ILLNDPDVCYGIGVVSVERIDEINILEATKEAMAKAIANLSVHPDFLLIDGLHLPHKIPC 137 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGDS S SIAAASIIAK RD LMR H++YP+YGFD H GY TA H ++ Sbjct: 138 KK--IIKGDSKSASIAAASIIAKEYRDDLMRELHQRYPNYGFDKHKGYGTAAHLAALRAF 195 Query: 192 GPSCIHRLTFRPLRNL 207 GP HR +F P+R + Sbjct: 196 GPCDCHRKSFAPIRQV 211 >gi|225621120|ref|YP_002722378.1| ribonuclease HII [Brachyspira hyodysenteriae WA1] gi|225215940|gb|ACN84674.1| ribonuclease HII [Brachyspira hyodysenteriae WA1] Length = 226 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/191 (43%), Positives = 112/191 (58%), Gaps = 13/191 (6%) Query: 26 VAGIDEVGRGALAGPVVVAAII----------LDPNNIPFGINDSKKISHKKREELYEKI 75 + GIDEVGRG L GPV VAA+I L NI I+DSKKIS KKREELY+KI Sbjct: 26 ICGIDEVGRGCLFGPVTVAAVIMPLELYNENELKKENIVEEIDDSKKISAKKREELYDKI 85 Query: 76 TSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A+ SI S + ID+ NI+ A A+ +AV NL + P LID ++ D+ + Sbjct: 86 IDKALCYSIYSVDSKTIDEINIYNAVKLAMVNAVNNLNIKPDILLID--AVKLDINIKQC 143 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 ++ KGD+ S SI ASI+AKV RDR+M Y Y + GY T +H + I+ GPS Sbjct: 144 SITKGDAKSYSIGCASIVAKVYRDRMMNELPDFYQKYKVSKNKGYGTKEHMKTIEMYGPS 203 Query: 195 CIHRLTFRPLR 205 +HR +F P++ Sbjct: 204 DMHRYSFEPIK 214 >gi|83754963|pdb|2ETJ|A Chain A, Crystal Structure Of Ribonuclease Hii (Ec 3.1.26.4) (Rnase Hii) (Tm0915) From Thermotoga Maritima At 1.74 A Resolution Length = 250 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 86/188 (45%), Positives = 112/188 (59%), Gaps = 4/188 (2%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 +K VAG+DE GRG LAGPVV AA++L+ GINDSK++S KRE L ++I A Sbjct: 20 KKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKE--IEGINDSKQLSPAKRERLLDEIXEKA 77 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 + I AS + ID +NI AT A A+ENL V P L+DG+ I +P ++KG Sbjct: 78 AVGIGIASPEEIDLYNIFNATKLAXNRALENLSVKPSFVLVDGKGIELSVP--GTCLVKG 135 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D S I AASI+AKV RDRL H+ YP + F H GY T +H I++ G IHRL Sbjct: 136 DQKSKLIGAASIVAKVFRDRLXSEFHRXYPQFSFHKHKGYATKEHLNEIRKNGVLPIHRL 195 Query: 200 TFRPLRNL 207 +F P+ L Sbjct: 196 SFEPVLEL 203 >gi|91762761|ref|ZP_01264726.1| Ribonuclease HII (RNase HII) [Candidatus Pelagibacter ubique HTCC1002] gi|91718563|gb|EAS85213.1| Ribonuclease HII (RNase HII) [Candidatus Pelagibacter ubique HTCC1002] Length = 186 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 80/185 (43%), Positives = 117/185 (63%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M +AG+DEVGRG+L GPV AAIIL+ + + DSK ++ KREEL + I ++I + Sbjct: 1 MKILAGVDEVGRGSLIGPVYAAAIILNNSIDKKLLKDSKTLTKDKREELEKYIKKNSIWA 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I AS + I+K NI +A+L A+ A+ L+ P LIDG +P+ + VIKGD Sbjct: 61 IGQASTKEIEKINILQASLLAMKRAILKLKTKPSLVLIDGNKLPDLKNYKLKYVIKGDQK 120 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SI+AASI+AKV+RD+ + KK+ +YG+D++ GY T +H IK+ G + HR TF Sbjct: 121 IPSISAASIVAKVSRDKFITKLSKKFNNYGWDTNSGYGTKEHLNAIKKFGITKYHRKTFS 180 Query: 203 PLRNL 207 P+ +L Sbjct: 181 PICDL 185 >gi|219854648|ref|YP_002471770.1| hypothetical protein CKR_1305 [Clostridium kluyveri NBRC 12016] gi|219568372|dbj|BAH06356.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 290 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 87/192 (45%), Positives = 117/192 (60%), Gaps = 9/192 (4%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-----FGINDSKKISHKKREELYEKIT 76 N VAG DEVGRG LAGP+V AA+IL+ N + G+ DSKK++ K R EL + I Sbjct: 101 NYIYVAGTDEVGRGPLAGPIVAAAVILNLNYVEDKKLILGVKDSKKLTQKARYELSQTIK 160 Query: 77 SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 A+ SI+ +++ IDK I + + AV L++ L DG ++ ++LP + Sbjct: 161 EKALSYSIAVINNKEIDKRGISWCNNEVLRKAVLGLKLPVELVLSDGYAV-KNLPVRNEF 219 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 VIKGDS S+SIA+ASIIAKV RD LMR K Y +Y F S+ GY T +H IK+ G Sbjct: 220 VIKGDSKSVSIASASIIAKVYRDELMREYSKVYTEYNFQSNSGYGTKEHIGAIKKYGTCK 279 Query: 196 IHRLTFRPLRNL 207 IHRL+F LRN+ Sbjct: 280 IHRLSF--LRNI 289 >gi|288922428|ref|ZP_06416616.1| Ribonuclease H [Frankia sp. EUN1f] gi|288346231|gb|EFC80572.1| Ribonuclease H [Frankia sp. EUN1f] Length = 240 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 80/193 (41%), Positives = 110/193 (56%), Gaps = 4/193 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKRE 69 F E + + PVAG+DE GRGA AGP+VVAA+IL P +NDSK ++ + RE Sbjct: 15 FGYERALTRCGLGPVAGVDEAGRGACAGPLVVAAVILRPGRTRRLARLNDSKLLTERVRE 74 Query: 70 ELYEKITSSAIISISSASHQY-IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E+Y + +SA + ID+ +H A + + AV L V P L DG ++ E Sbjct: 75 EVYADVQASAAAVATVVVPAADIDRIGVHVANIMGMRRAVARLGVSPGYVLTDGFAV-EG 133 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 ++ AVIKGD IAAAS++AKVTRDR+MR H++Y +Y F H GY TA H + Sbjct: 134 FGVESLAVIKGDRAVGCIAAASVVAKVTRDRIMRCLHEQYAEYDFAQHKGYVTAAHTAAL 193 Query: 189 KEKGPSCIHRLTF 201 GP HRL++ Sbjct: 194 ARYGPCAEHRLSY 206 >gi|82701801|ref|YP_411367.1| ribonuclease H [Nitrosospira multiformis ATCC 25196] gi|97189026|sp|Q2YB96|RNH2_NITMU RecName: Full=Ribonuclease HII; Short=RNase HII gi|82409866|gb|ABB73975.1| RNase HII [Nitrosospira multiformis ATCC 25196] Length = 199 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 80/188 (42%), Positives = 111/188 (59%), Gaps = 3/188 (1%) Query: 22 NMWP-VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 N +P V G+DE GRG LAGPV A +ILDP + G+ DSK ++ KR L I + +I Sbjct: 4 NEYPWVCGVDEAGRGPLAGPVFAACVILDPASPIDGLADSKTLTEGKRNSLTLAIKAYSI 63 Query: 81 I-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 +I AS + ID+ NI +A+L A+ A+ L V P L+DG P L +++G Sbjct: 64 AWAIGFASVREIDRLNILQASLLAMKRAIGKLPVTPARVLVDGNHSPR-LKFPVTTIVRG 122 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS+ I+AASI+AK RD M H+++P YGFD H GY T +H +K G S +HR Sbjct: 123 DSLVPEISAASILAKTARDAEMMALHRRFPRYGFDQHKGYSTEQHLAALKIHGVSIVHRR 182 Query: 200 TFRPLRNL 207 +F P+R L Sbjct: 183 SFAPVREL 190 >gi|153954034|ref|YP_001394799.1| ribonuclease HII [Clostridium kluyveri DSM 555] gi|189043584|sp|A5N820|RNH2_CLOK5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|146346915|gb|EDK33451.1| Hypothetical protein CKL_1409 [Clostridium kluyveri DSM 555] Length = 288 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 87/192 (45%), Positives = 117/192 (60%), Gaps = 9/192 (4%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-----FGINDSKKISHKKREELYEKIT 76 N VAG DEVGRG LAGP+V AA+IL+ N + G+ DSKK++ K R EL + I Sbjct: 99 NYIYVAGTDEVGRGPLAGPIVAAAVILNLNYVEDKKLILGVKDSKKLTQKARYELSQTIK 158 Query: 77 SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 A+ SI+ +++ IDK I + + AV L++ L DG ++ ++LP + Sbjct: 159 EKALSYSIAVINNKEIDKRGISWCNNEVLRKAVLGLKLPVELVLSDGYAV-KNLPVRNEF 217 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 VIKGDS S+SIA+ASIIAKV RD LMR K Y +Y F S+ GY T +H IK+ G Sbjct: 218 VIKGDSKSVSIASASIIAKVYRDELMREYSKVYTEYNFQSNSGYGTKEHIGAIKKYGTCK 277 Query: 196 IHRLTFRPLRNL 207 IHRL+F LRN+ Sbjct: 278 IHRLSF--LRNI 287 >gi|332532224|ref|ZP_08408105.1| ribonuclease HII [Pseudoalteromonas haloplanktis ANT/505] gi|332038322|gb|EGI74767.1| ribonuclease HII [Pseudoalteromonas haloplanktis ANT/505] Length = 200 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/187 (43%), Positives = 112/187 (59%), Gaps = 2/187 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81 N+ +AG+DEVGRG L G VV AA+ILDP G+ DSKK++ KKR+ L +I A+ Sbjct: 7 NVSLIAGVDEVGRGPLVGDVVTAAVILDPTKPIAGLADSKKLTDKKRQALAIEIKEKALC 66 Query: 82 -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 + S ID+ NI AT+ A+ AVE L P IDG +P+ L A AV+KGD Sbjct: 67 YAYGRCSPTEIDELNILHATMLAMSRAVEALSTQPEFVFIDGNRLPK-LTMPAQAVVKGD 125 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+ I+AASI+AKV RD M ++P+YGF H GYPT H +++ G HR + Sbjct: 126 SLVAEISAASILAKVARDDEMLELDARHPEYGFAGHKGYPTKAHFAALEQYGAIDEHRKS 185 Query: 201 FRPLRNL 207 F+P++ + Sbjct: 186 FKPVQRV 192 >gi|227524479|ref|ZP_03954528.1| ribonuclease HII [Lactobacillus hilgardii ATCC 8290] gi|227088349|gb|EEI23661.1| ribonuclease HII [Lactobacillus hilgardii ATCC 8290] Length = 255 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/194 (41%), Positives = 116/194 (59%), Gaps = 8/194 (4%) Query: 20 EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E++ W VAG+DEVGRG LAGPVV A IL + +NDSK+++ + R L + Sbjct: 63 ERSFWHRGVNYVAGVDEVGRGPLAGPVVACATILPRDFDLIQVNDSKQLTPEIRARLAPQ 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI I + ++ ID+ NI++AT A+ AV NL P ++D IP +P Sbjct: 123 IKREAISIGLGLVDNKGIDRLNIYEATRVAMKQAVNNLTQQPDEIIVDAMQIP--VPIHQ 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGD+ S+S++AASI+AKV RD LM ++YP+Y F + GY T KH +K+ G Sbjct: 181 TRLIKGDAKSISVSAASIVAKVYRDNLMDQYAQQYPEYDFRHNAGYGTTKHLSALKKYGA 240 Query: 194 SCIHRLTFRPLRNL 207 + IHR TF P++N Sbjct: 241 TPIHRKTFAPIKNF 254 >gi|117928761|ref|YP_873312.1| ribonuclease H [Acidothermus cellulolyticus 11B] gi|189043529|sp|A0LV66|RNH2_ACIC1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|117649224|gb|ABK53326.1| Ribonuclease H [Acidothermus cellulolyticus 11B] Length = 307 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 83/197 (42%), Positives = 111/197 (56%), Gaps = 4/197 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKRE 69 + E + + PVAG+DE GRGA AGP+VVAA+IL D N G+ DSK+++ RE Sbjct: 32 YRYERRLARLGLEPVAGVDEAGRGACAGPLVVAAVILGSDRRNRIAGLADSKQLTPAARE 91 Query: 70 ELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +Y +I S A+ S+ +D+ +H A + + AV L V P L DG SI Sbjct: 92 SIYNEIISRALAWSVVVIPSSEVDELGVHAANITGMRRAVAGLAVRPAYVLTDGFSIA-G 150 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L AV KGD IAAAS++AKVTRDRLM H+K+P Y F +H GY TA H+ + Sbjct: 151 LNAPGLAVCKGDEAVACIAAASVVAKVTRDRLMVELHEKFPMYEFATHKGYVTAGHRAAL 210 Query: 189 KEKGPSCIHRLTFRPLR 205 GP HR +F +R Sbjct: 211 ARHGPCPEHRRSFVTVR 227 >gi|289766192|ref|ZP_06525570.1| ribonuclease HII [Fusobacterium sp. D11] gi|289717747|gb|EFD81759.1| ribonuclease HII [Fusobacterium sp. D11] Length = 213 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 82/192 (42%), Positives = 116/192 (60%), Gaps = 11/192 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84 V G+DE GRG LAGPVV AA+IL + INDSKK++ KKRE+LY+ I + +++ Sbjct: 15 VIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSKKLTEKKREKLYDIIMKNFYVAVG 74 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRS--------ALIDGRSIPEDLPCQAFAV 136 ++ + IDK NI A A+ A+++L+ I + L+DG ++ + + Sbjct: 75 ISTVEEIDKMNILNADFLAMRRALKDLENIKKDKKDKKEYIVLVDGNLKIKEYSGKQLPI 134 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SC 195 +KGD+ SLS+AAASIIAKVTRDR M+ YPDY F+ H GY T H + IK+KG Sbjct: 135 VKGDAKSLSVAAASIIAKVTRDRFMKDLANIYPDYSFEKHKGYGTKAHIEAIKDKGAIEG 194 Query: 196 IHRLTF-RPLRN 206 +HR F R + N Sbjct: 195 VHRKVFLRKINN 206 >gi|169350423|ref|ZP_02867361.1| hypothetical protein CLOSPI_01191 [Clostridium spiroforme DSM 1552] gi|169292743|gb|EDS74876.1| hypothetical protein CLOSPI_01191 [Clostridium spiroforme DSM 1552] Length = 206 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 80/183 (43%), Positives = 111/183 (60%), Gaps = 10/183 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + G+DE GRG +AG +VVA +I INDSK++S+KKREELY I +A+ I Sbjct: 18 IIGLDEAGRGPMAGELVVAGVIFPKGYYDERINDSKQLSNKKREELYGLIVENALAYDIE 77 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF---AVIKGDS 141 S + +DK N+++A+ A+ + NL AL D +P F A+IKGD+ Sbjct: 78 IVSVEDVDKLNVYQASKQAMEKCISNLMRDKMFALSDA------MPLSYFNHEAIIKGDA 131 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 S+SI AASI+AKVTRD LM K YP+YGFD H GY T H++ +++ GP IHR +F Sbjct: 132 KSISIGAASILAKVTRDHLMEEYAKIYPEYGFDKHKGYVTKMHKEALEKYGPCPIHRKSF 191 Query: 202 RPL 204 P+ Sbjct: 192 APV 194 >gi|71082816|ref|YP_265535.1| ribonuclease HII (RNase HII) [Candidatus Pelagibacter ubique HTCC1062] gi|97189139|sp|Q4FPF7|RNH2_PELUB RecName: Full=Ribonuclease HII; Short=RNase HII gi|71061929|gb|AAZ20932.1| Ribonuclease HII (RNase HII) [Candidatus Pelagibacter ubique HTCC1062] Length = 186 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 79/185 (42%), Positives = 118/185 (63%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M +AG+DEVGRG+L GPV AA+IL+ + + DSK ++ KREEL + I ++I + Sbjct: 1 MKILAGVDEVGRGSLIGPVYAAAVILNNSIDKKLLKDSKTLTKDKREELEKYIKKNSIWA 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I AS + I+K NI A+L A+ A+ L++ P LIDG +P+ + VIKGD Sbjct: 61 IGQASTKEIEKINILHASLLAMKRAILKLKIKPSLVLIDGNKLPDLKNYKLEYVIKGDQK 120 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SI+AASIIAKV+RD+ + K++ +YG+D++ GY T +H + IK+ G + HR TF Sbjct: 121 IPSISAASIIAKVSRDKFITKLSKEFNNYGWDTNSGYGTKEHLKAIKQFGITKYHRKTFS 180 Query: 203 PLRNL 207 P+ +L Sbjct: 181 PISDL 185 >gi|54294259|ref|YP_126674.1| hypothetical protein lpl1324 [Legionella pneumophila str. Lens] gi|81368717|sp|Q5WWX5|RNH2_LEGPL RecName: Full=Ribonuclease HII; Short=RNase HII gi|53754091|emb|CAH15564.1| hypothetical protein lpl1324 [Legionella pneumophila str. Lens] Length = 191 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 83/185 (44%), Positives = 115/185 (62%), Gaps = 8/185 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG LAG VV AA+IL P G+ DSKK+S K+R L +I A+ + Sbjct: 9 MAGVDEVGRGPLAGAVVTAAVILKK---PIDGLTDSKKLSPKQRNLLAIRIKEEALAFAY 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSI 142 A + ID+ NIH ATL A+ AVE L + P + L+DG P+ ++PC+A +++GDS+ Sbjct: 66 GRAEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVLVDGAFTPQLNMPCKA--IVQGDSL 123 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKV RD M K YP YGF H GY T H++ + GP IHR ++ Sbjct: 124 IPEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYS 183 Query: 203 PLRNL 207 P+ +L Sbjct: 184 PVADL 188 >gi|160874612|ref|YP_001553928.1| ribonuclease HII [Shewanella baltica OS195] gi|189043658|sp|A9KUL9|RNH2_SHEB9 RecName: Full=Ribonuclease HII; Short=RNase HII gi|160860134|gb|ABX48668.1| Ribonuclease H [Shewanella baltica OS195] gi|315266853|gb|ADT93706.1| Ribonuclease H [Shewanella baltica OS678] Length = 210 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 86/188 (45%), Positives = 114/188 (60%), Gaps = 6/188 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S K+RE L+++I A+ + Sbjct: 20 IAGVDEVGRGPLVGDVVTAAVILDPNKPISGLNDSKKLSEKRREALFDEICDKALCYHVG 79 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-----EDLPCQAFAVIKG 139 AS ID+ NI AT+ A+ AV L + P L+DG P + ++IKG Sbjct: 80 RASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRSPIFVAHNGAGLTSHSIIKG 139 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D + SI+AASIIAKVTRDR M + YP YGF H GYPT H + I E G +R Sbjct: 140 DGLIASISAASIIAKVTRDREMDVLDAAYPQYGFAKHKGYPTKAHFEAIAEHGVFDQYRK 199 Query: 200 TFRPLRNL 207 +F+P++ L Sbjct: 200 SFKPVKAL 207 >gi|126173702|ref|YP_001049851.1| ribonuclease HII [Shewanella baltica OS155] gi|166226650|sp|A3D2L9|RNH2_SHEB5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|125996907|gb|ABN60982.1| RNase HII [Shewanella baltica OS155] Length = 210 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 86/188 (45%), Positives = 114/188 (60%), Gaps = 6/188 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S K+RE L+++I A+ + Sbjct: 20 IAGVDEVGRGPLVGDVVTAAVILDPNKPISGLNDSKKLSEKRREALFDEICDKALCYHVG 79 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-----EDLPCQAFAVIKG 139 AS ID+ NI AT+ A+ AV L + P L+DG P + ++IKG Sbjct: 80 RASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRSPIFVAHNGAELTSHSIIKG 139 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D + SI+AASIIAKVTRDR M + YP YGF H GYPT H + I E G +R Sbjct: 140 DGLIASISAASIIAKVTRDREMDVLDAAYPQYGFAKHKGYPTKAHFEAIAEHGVFDQYRK 199 Query: 200 TFRPLRNL 207 +F+P++ L Sbjct: 200 SFKPVKAL 207 >gi|217970566|ref|YP_002355800.1| ribonuclease HII [Thauera sp. MZ1T] gi|217507893|gb|ACK54904.1| Ribonuclease H [Thauera sp. MZ1T] Length = 203 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 80/183 (43%), Positives = 108/183 (59%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 + G+DE GRG L GPVV AA+ILDP G+ DSKK+S RE L I + A+ +++ Sbjct: 16 ICGVDEAGRGPLCGPVVAAAVILDPARPIEGLADSKKLSEAARERLAPLIRARALAWAVA 75 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID+ NI AT+ A+ AV L + P IDG P+ LP A A++KGD+ Sbjct: 76 EASVEEIDRLNILHATMLAMQRAVMALGIAPAEVRIDGNRCPK-LPYPARAIVKGDATEP 134 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI+AASI+AK RD MR ++P YG +H GYPTA H + G HR +F P+ Sbjct: 135 SISAASILAKTARDAAMRELDAQWPQYGLAAHKGYPTAAHLAALAAHGVQAFHRRSFAPV 194 Query: 205 RNL 207 + L Sbjct: 195 KKL 197 >gi|256028260|ref|ZP_05442094.1| ribonuclease HII [Fusobacterium sp. D11] Length = 234 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 82/192 (42%), Positives = 116/192 (60%), Gaps = 11/192 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84 V G+DE GRG LAGPVV AA+IL + INDSKK++ KKRE+LY+ I + +++ Sbjct: 36 VIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSKKLTEKKREKLYDIIMKNFYVAVG 95 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRS--------ALIDGRSIPEDLPCQAFAV 136 ++ + IDK NI A A+ A+++L+ I + L+DG ++ + + Sbjct: 96 ISTVEEIDKMNILNADFLAMRRALKDLENIKKDKKDKKEYIVLVDGNLKIKEYSGKQLPI 155 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SC 195 +KGD+ SLS+AAASIIAKVTRDR M+ YPDY F+ H GY T H + IK+KG Sbjct: 156 VKGDAKSLSVAAASIIAKVTRDRFMKDLANIYPDYSFEKHKGYGTKAHIEAIKDKGAIEG 215 Query: 196 IHRLTF-RPLRN 206 +HR F R + N Sbjct: 216 VHRKVFLRKINN 227 >gi|218767115|ref|YP_002341627.1| ribonuclease HII [Neisseria meningitidis Z2491] gi|11387099|sp|Q9JX40|RNH2_NEIMA RecName: Full=Ribonuclease HII; Short=RNase HII gi|121051123|emb|CAM07394.1| ribonuclease HII [Neisseria meningitidis Z2491] gi|319411322|emb|CBY91733.1| ribonuclease HII (RNase HII) [Neisseria meningitidis WUE 2594] Length = 194 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 81/184 (44%), Positives = 112/184 (60%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83 AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L E I + A+ + Sbjct: 5 TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKNQAVAWHV 63 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 ++A + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS Sbjct: 64 AAAGPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKI 123 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M +++P YGFD H GY T +H + +++ G HR F P Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALEKYGVLPEHRRDFAP 183 Query: 204 LRNL 207 +RNL Sbjct: 184 VRNL 187 >gi|299822635|ref|ZP_07054521.1| ribonuclease H [Listeria grayi DSM 20601] gi|299816164|gb|EFI83402.1| ribonuclease H [Listeria grayi DSM 20601] Length = 259 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 95/202 (47%), Positives = 128/202 (63%), Gaps = 7/202 (3%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKIS 64 + E FE E + + +AG+DEVGRG LAGPVV AA+IL PN+ GINDSK++S Sbjct: 56 LQEMKQFESEYL--KAGYSRIAGVDEVGRGPLAGPVVAAAVIL-PNDFSVTGINDSKQLS 112 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +KR+ Y+ I A+ I IS SH+ ID+ NI++AT A+ A++NL P LID Sbjct: 113 EEKRQYYYDIIREQAVSIGISIQSHEVIDQVNIYEATKLAMAEALDNLDPAPDFTLIDAM 172 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + Q A+IKGD+ S+SIAAASIIAKVTRD LM+ A + YP Y F ++GY T Sbjct: 173 KL--GYSKQELAIIKGDTKSISIAAASIIAKVTRDSLMKEAEQLYPGYDFAHNMGYGTKL 230 Query: 184 HQQVIKEKGPSCIHRLTFRPLR 205 H + ++G IHRLTF P++ Sbjct: 231 HLAGLDQQGVCPIHRLTFAPVK 252 >gi|304409576|ref|ZP_07391196.1| Ribonuclease H [Shewanella baltica OS183] gi|307303934|ref|ZP_07583687.1| Ribonuclease H [Shewanella baltica BA175] gi|304352094|gb|EFM16492.1| Ribonuclease H [Shewanella baltica OS183] gi|306912832|gb|EFN43255.1| Ribonuclease H [Shewanella baltica BA175] Length = 210 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 86/188 (45%), Positives = 114/188 (60%), Gaps = 6/188 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S K+RE L+++I A+ + Sbjct: 20 IAGVDEVGRGPLVGDVVTAAVILDPNKPISGLNDSKKLSEKRREALFDEICDKALCYHVG 79 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-----EDLPCQAFAVIKG 139 AS ID+ NI AT+ A+ AV L + P L+DG P + ++IKG Sbjct: 80 RASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRSPIFVAHNGAGLTSHSIIKG 139 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D + SI+AASIIAKVTRDR M + YP YGF H GYPT H + I E G +R Sbjct: 140 DGLIASISAASIIAKVTRDREMDVLDAAYPQYGFAKHKGYPTKAHFEAIAEHGVFDQYRK 199 Query: 200 TFRPLRNL 207 +F+P++ L Sbjct: 200 SFKPVKAL 207 >gi|317152482|ref|YP_004120530.1| Ribonuclease H [Desulfovibrio aespoeensis Aspo-2] gi|316942733|gb|ADU61784.1| Ribonuclease H [Desulfovibrio aespoeensis Aspo-2] Length = 207 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 81/188 (43%), Positives = 108/188 (57%), Gaps = 11/188 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DE GRG LAGPVV A IL G+NDSK++S KRE LY I S A+ ++ Sbjct: 11 IAGVDEAGRGCLAGPVVAGACILPQTYDLPGLNDSKQLSAAKRETLYPLIRSQAVAWAVG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA-------VI 137 + ID+ NI +AT A+ AV L++ PR IDG I +P A VI Sbjct: 71 LSWPGEIDRVNILQATFLAMGRAVRALKLSPRFLRIDGNKI---IPAHALGLGVSQEWVI 127 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD +I+AAS++AK RDRLM +YP YG + H+GY T +H + + GP +H Sbjct: 128 GGDGSVPAISAASVLAKTFRDRLMVKLAARYPGYGLERHMGYGTKEHMEAVARLGPCAMH 187 Query: 198 RLTFRPLR 205 RLTFR +R Sbjct: 188 RLTFRGVR 195 >gi|15675138|ref|NP_269312.1| ribonuclease HII [Streptococcus pyogenes M1 GAS] gi|32171707|sp|Q99ZM6|RNH2_STRP1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|13622298|gb|AAK34033.1| putative ribonuclease HII [Streptococcus pyogenes M1 GAS] Length = 263 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 82/197 (41%), Positives = 120/197 (60%), Gaps = 6/197 (3%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + +K +AGIDEVGRG LAGPVV A +IL G+NDSKKI K E +Y+ Sbjct: 62 EKALYKKGYKAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKAKHETIYQA 121 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLP 130 + A+ I I +Q ID+ NI++AT A+ A++ L+ P LID ++ D+ Sbjct: 122 VKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTL--DIA 179 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +++KGD+ SLSIAAASI+AKVTRD++M + +P Y F + GY T +H Q +K Sbjct: 180 ISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYDFAKNAGYGTKEHLQGLKA 239 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 240 YGITPIHRKSFEPVKSM 256 >gi|317052287|ref|YP_004113403.1| ribonuclease H [Desulfurispirillum indicum S5] gi|316947371|gb|ADU66847.1| Ribonuclease H [Desulfurispirillum indicum S5] Length = 201 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 82/190 (43%), Positives = 111/190 (58%), Gaps = 1/190 (0%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + R + +AG+DEVGRG LAGPV AA+IL + I DSKK+S +R L Sbjct: 5 EFDQQWRNCHTQHIAGVDEVGRGPLAGPVCAAAVILPADFSDSRIRDSKKLSALQRRTLS 64 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I S + S+++ + ID NI AT A++ A+ L + P L+DG Sbjct: 65 DLIRHSCLAWSVATVDCEVIDTINILHATRLAMWQALSQLPMTPELLLVDGMDNSFFPAV 124 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + VIKGD++SLSIAAASI+AKV RD LM ++YP YGF H GY TA+H+Q I+E Sbjct: 125 RGEKVIKGDNLSLSIAAASIVAKVHRDELMEALDQRYPQYGFARHKGYGTAQHRQAIREH 184 Query: 192 GPSCIHRLTF 201 G HR +F Sbjct: 185 GLCPQHRRSF 194 >gi|298490081|ref|YP_003720258.1| ribonuclease H ['Nostoc azollae' 0708] gi|298231999|gb|ADI63135.1| Ribonuclease H ['Nostoc azollae' 0708] Length = 221 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 83/203 (40%), Positives = 119/203 (58%), Gaps = 7/203 (3%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSK 61 +PE +EL + VAG+DEVGRGAL GPVV AA++L + +P I DSK Sbjct: 17 LPESSWWELSTCANIHGL--VAGVDEVGRGALFGPVVAAAVMLSADALPKLMAAKIKDSK 74 Query: 62 KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K+S +R +L ++I + I A+ ID+ NI +ATL A+ AV L+V P L+ Sbjct: 75 KLSASRRTQLAQQINGLVLDWKIGYATTAEIDQFNILQATLLAMKRAVLKLKVPPALCLV 134 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG + +DL +IKGD SL+IA+ASI+AKV RD L+ KYP Y + + GY Sbjct: 135 DGNQLVKDLLIPQETMIKGDERSLNIASASIMAKVWRDDLLLRLASKYPMYELERNKGYG 194 Query: 181 TAKHQQVIKEKGPSCIHRLTFRP 203 + +H +++ G S +HR +FRP Sbjct: 195 SQRHLLALRKYGASPLHRRSFRP 217 >gi|228474964|ref|ZP_04059692.1| ribonuclease HII [Staphylococcus hominis SK119] gi|228270949|gb|EEK12337.1| ribonuclease HII [Staphylococcus hominis SK119] Length = 255 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 79/183 (43%), Positives = 113/183 (61%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG LAGPVV A+IL+ + G++DSKK+S KR+ L E++ + Sbjct: 74 ICGIDEVGRGPLAGPVVACAVILNKEHQYLGLDDSKKVSATKRKILNEQLKEGVYDYAYG 133 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID+ NI+ AT A+ A+ L+ P LID ++ +P ++IKGD+ S+ Sbjct: 134 IASAEEIDEFNIYNATKLAMERAINQLKQQPNHLLIDAMTLDNAMP--QTSIIKGDAKSV 191 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASI+AK RD LM KYP Y F+ +VGY T H Q +K+ G + HR TF P+ Sbjct: 192 SIAAASIMAKEYRDGLMAAVALKYPGYDFEKNVGYGTKSHLQGLKQLGITPYHRKTFEPV 251 Query: 205 RNL 207 +++ Sbjct: 252 KSM 254 >gi|157825403|ref|YP_001493123.1| ribonuclease HII [Rickettsia akari str. Hartford] gi|166226646|sp|A8GMJ0|RNH2_RICAH RecName: Full=Ribonuclease HII; Short=RNase HII gi|157799361|gb|ABV74615.1| ribonuclease HII [Rickettsia akari str. Hartford] Length = 193 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 91/192 (47%), Positives = 122/192 (63%), Gaps = 7/192 (3%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 HFE ++ + + VAGIDE GRG LAGPVV +A+I+D NI GI DSKK+S KKR Sbjct: 7 HFE-----KKYHNYIVAGIDEAGRGPLAGPVVASAVIIDNANIIHGIKDSKKLSKKKRAL 61 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 LYE+ITS+ + +++ +H IDK NI +AT A A NL V P L+DG D Sbjct: 62 LYEQITSNYVWAVAIITHTEIDKINILEATKKACSIAAANLNVKPEIVLVDGNMQFSDE- 120 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +++ GD++SLSIAAASIIAKVTRDRLM K+P Y + + GY T +H + I + Sbjct: 121 -RFISIVNGDNLSLSIAAASIIAKVTRDRLMLELSAKFPQYLWHKNSGYGTKEHLEAINK 179 Query: 191 KGPSCIHRLTFR 202 G S HR +F+ Sbjct: 180 YGLSPYHRKSFK 191 >gi|57234417|ref|YP_181512.1| ribonuclease HII [Dehalococcoides ethenogenes 195] gi|97182406|sp|Q3Z8D7|RNH2_DEHE1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|57224865|gb|AAW39922.1| ribonuclease HII [Dehalococcoides ethenogenes 195] Length = 211 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 84/197 (42%), Positives = 112/197 (56%), Gaps = 10/197 (5%) Query: 20 EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREEL 71 EK++W +AG+DE GRG LAGPVV A+I+ P + + DSK ++ +KRE L Sbjct: 12 EKHLWKQGFSSIAGLDEAGRGCLAGPVVAGAVIMPPRLKGDWVAMVRDSKVLTPEKREYL 71 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y I S AI + + ID I AT A+ AVE+L P L+D +P D+P Sbjct: 72 YCHIVSMAISFGVGVVDNTQIDCLGIAPATRLAMKQAVEHLDCRPDFLLVDYLKLP-DIP 130 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++ GD++ SIA ASIIAKV+RDRLM YP Y H GY TA H + I + Sbjct: 131 LPQKGIVDGDALCFSIACASIIAKVSRDRLMCELEATYPGYHLAKHKGYGTALHMECISQ 190 Query: 191 KGPSCIHRLTFRPLRNL 207 KG S IHR TF PL+++ Sbjct: 191 KGISPIHRRTFAPLKSM 207 >gi|260061789|ref|YP_003194869.1| ribonuclease HII [Robiginitalea biformata HTCC2501] gi|88785921|gb|EAR17090.1| ribonuclease HII [Robiginitalea biformata HTCC2501] Length = 198 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 78/181 (43%), Positives = 115/181 (63%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-ISS 85 AG DE GRG LAGPV AA+IL +NDSKK+S +RE L KI A+ + ++ Sbjct: 12 AGTDEAGRGCLAGPVTAAAVILPERFEDPLLNDSKKLSADQRERLAPKILREALATGVAH 71 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIP-EDLPCQAFAVIKGDSIS 143 ID+ NI +A+L A++ A++ L + P + +DG R +P E +P Q +++GD Sbjct: 72 IPPATIDEINILQASLQAMHRALDQLGMRPEAIAVDGNRFLPYEGIPYQC--LVRGDGRY 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 L+IAAAS++AK RD MR H++YP YG+D + GYPT +H++ +++ GPS HR +FR Sbjct: 130 LNIAAASVLAKTARDARMRELHREYPQYGWDRNKGYPTQEHREALRKHGPSPYHRQSFRL 189 Query: 204 L 204 L Sbjct: 190 L 190 >gi|323700101|ref|ZP_08112013.1| Ribonuclease H [Desulfovibrio sp. ND132] gi|323460033|gb|EGB15898.1| Ribonuclease H [Desulfovibrio desulfuricans ND132] Length = 213 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 80/187 (42%), Positives = 109/187 (58%), Gaps = 9/187 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DE GRG LAGPVV A IL G++DSKK++ KRE LY +I A+ + Sbjct: 17 IAGVDEAGRGCLAGPVVAGACILPAEYDLPGLDDSKKLTAAKREALYPRIREQAVAWGLG 76 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPR------SALIDGRSIPEDLPCQAFAVIK 138 A ID+ NI +AT A+ AV L+ PR LI G ++ D+P + V++ Sbjct: 77 VAWPWEIDEINILQATFRAMSRAVWALKAEPRFLRIDGDKLIPGHALQRDIPQEC--VVQ 134 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD +I+AAS++AK RDRLM ++YP YG H+GY T H I+E GP +HR Sbjct: 135 GDGKVPAISAASVLAKTFRDRLMVRLARRYPGYGLAKHMGYGTEAHVAAIRELGPCRLHR 194 Query: 199 LTFRPLR 205 LTFR +R Sbjct: 195 LTFRKVR 201 >gi|330836476|ref|YP_004411117.1| Ribonuclease H [Spirochaeta coccoides DSM 17374] gi|329748379|gb|AEC01735.1| Ribonuclease H [Spirochaeta coccoides DSM 17374] Length = 210 Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 81/180 (45%), Positives = 107/180 (59%), Gaps = 6/180 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + GIDE GRG LAGPV AA+IL P+ + DSKK+S K+R I A+ I Sbjct: 20 ICGIDEAGRGPLAGPVCAAAVILPPDFPRDILGDSKKLSEKQRLAAEIIIREQAVWGIGW 79 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA---LIDG-RSIPEDLPCQAFAVIKGDS 141 AS Q ID++NI +AT A+ AVE + R LIDG R+ P +P + A+IKGDS Sbjct: 80 ASAQEIDRYNILQATFRAMRRAVEKVIAQDRQVELLLIDGNRTFPHAIP--SAAIIKGDS 137 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I AASI+AK RDR MR +K+P+Y F+ H GYP+ +H + GP +HRL+F Sbjct: 138 KVPEIMAASILAKTARDRFMRRMAEKWPEYNFEQHKGYPSRQHVSAYRTHGPCPLHRLSF 197 >gi|256545488|ref|ZP_05472850.1| ribonuclease HII [Anaerococcus vaginalis ATCC 51170] gi|256398884|gb|EEU12499.1| ribonuclease HII [Anaerococcus vaginalis ATCC 51170] Length = 210 Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 80/177 (45%), Positives = 111/177 (62%), Gaps = 3/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AGIDEVGRG LAGPVV A+I+ ++ G+ DSKK+S K+ ELY+KI +I S Sbjct: 24 IAGIDEVGRGPLAGPVVACAVIMKKDSHIEGVTDSKKLSKKRMNELYQKIIDDSISYSFG 83 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A++ IDK NI +AT A+ A+E L+ P+ LID I D + ++KGD Sbjct: 84 YANNILIDKINIKEATKLAMKDALEGLEKKPQIVLIDAERI--DTHIKQLNIVKGDLYEY 141 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +I+ ASI+AKV RD++M K YP Y F+S+VGY T KH + +++ G IHR TF Sbjct: 142 AISCASILAKVRRDKIMENFSKIYPYYSFESNVGYGTKKHYEGLEKFGECPIHRKTF 198 >gi|307610074|emb|CBW99613.1| hypothetical protein LPW_13821 [Legionella pneumophila 130b] Length = 191 Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 83/185 (44%), Positives = 115/185 (62%), Gaps = 8/185 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG LAG VV AA+IL P G+ DSKK+S K+R L +I A+ + Sbjct: 9 MAGVDEVGRGPLAGAVVTAAVILKK---PIDGLTDSKKLSPKQRNLLAIRIKEEALAFAY 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSI 142 A + ID+ NIH ATL A+ AVE L + P + L+DG P+ ++PC+A +++GDS+ Sbjct: 66 GRAEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVLVDGAFTPQLNIPCKA--IVQGDSL 123 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKV RD M K YP YGF H GY T H++ + GP IHR ++ Sbjct: 124 IPEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYS 183 Query: 203 PLRNL 207 P+ +L Sbjct: 184 PVADL 188 >gi|295094900|emb|CBK83991.1| Ribonuclease HII [Coprococcus sp. ART55/1] Length = 251 Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 89/191 (46%), Positives = 122/191 (63%), Gaps = 4/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE E +K + GIDEVGRG LAGPVV AA+IL + +NDSK+++ KKRE L Sbjct: 59 FEFERKYADKGY--ICGIDEVGRGPLAGPVVAAAVILPKDCDILYLNDSKQLTPKKREAL 116 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y++I + A+ + + A+ + ID+ N+ A +A+ A+ LQV P+ L D +IP + Sbjct: 117 YDEIMAKAVAVGVGMANEKVIDEINVLNADYEAMKQAISKLQVKPQLLLNDAVNIP-GVD 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +IKGD++S SIAAASIIAKVTRDRLM YP YGF ++GY TA+H +K+ Sbjct: 176 IEQVGIIKGDTLSASIAAASIIAKVTRDRLMVEYDSLYPGYGFAKNMGYGTAEHIDALKK 235 Query: 191 KGPSCIHRLTF 201 GP IHR TF Sbjct: 236 IGPCAIHRRTF 246 >gi|303241143|ref|ZP_07327651.1| Ribonuclease H [Acetivibrio cellulolyticus CD2] gi|302591270|gb|EFL61010.1| Ribonuclease H [Acetivibrio cellulolyticus CD2] Length = 260 Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 97/192 (50%), Positives = 118/192 (61%), Gaps = 4/192 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 FE EA V +AGIDE GRG LAGPVV AA+IL N G+NDSKK+S K+REE Sbjct: 66 RFEKEAYVMGAKF--IAGIDEAGRGPLAGPVVAAAVILPENVFINGLNDSKKLSEKQREE 123 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY IT AI + + ID+ NI AT A+ AVE L+V P LID + + L Sbjct: 124 LYSIITEKAIAYDVGIVDEKVIDELNILNATKMAMEIAVEGLKVKPDILLIDAVKL-DSL 182 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + ++IKGD++S+SIAAASIIAKVTRDR + YPDYGF H GY T +H IK Sbjct: 183 KIKQESIIKGDALSISIAAASIIAKVTRDRYIDQMDSVYPDYGFRKHKGYGTKEHIDAIK 242 Query: 190 EKGPSCIHRLTF 201 + G IHR TF Sbjct: 243 KFGICPIHRTTF 254 >gi|116333443|ref|YP_794970.1| ribonuclease HII [Lactobacillus brevis ATCC 367] gi|122269870|sp|Q03S83|RNH2_LACBA RecName: Full=Ribonuclease HII; Short=RNase HII gi|116098790|gb|ABJ63939.1| RNase HII [Lactobacillus brevis ATCC 367] Length = 257 Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 90/194 (46%), Positives = 125/194 (64%), Gaps = 9/194 (4%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEK 74 E+ W VAGIDEVGRG LAGPVV +A+IL P+ +IP +NDSK+++ K+RE LY Sbjct: 64 ERPFWARGERVAGIDEVGRGPLAGPVVTSAVILPPDFDIPL-VNDSKQLTAKERERLYPL 122 Query: 75 ITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I + A +SI S ID+ NI++AT A+ AV L + P+ ++D IP D+P Sbjct: 123 ILAQAQSVSIGIGSPALIDQINIYQATRVAMQRAVLGLGLAPQQLIVDAMQIPVDVP--Q 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGD+ S S+AAASI+AKV RD LM + YP YGF + GY TA+H Q + ++G Sbjct: 181 IRLIKGDAKSASVAAASIVAKVYRDHLMATYDELYPGYGFAQNAGYGTAEHLQGLADRGV 240 Query: 194 SCIHRLTFRPLRNL 207 + IHR TF P++ + Sbjct: 241 TPIHRRTFSPVQKI 254 >gi|15606955|ref|NP_214337.1| RNase HII [Aquifex aeolicus VF5] gi|7227919|sp|O67768|RNH2_AQUAE RecName: Full=Ribonuclease HII; Short=RNase HII gi|2984206|gb|AAC07736.1| RNase HII [Aquifex aeolicus VF5] Length = 196 Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 84/201 (41%), Positives = 123/201 (61%), Gaps = 17/201 (8%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 ++ELE + EK + VAG+DE GRG LAGPVV AA+IL P PF DSKK++ K+REE Sbjct: 3 NYELE--LWEKGLL-VAGVDEAGRGPLAGPVVAAAVILPPFTEPFIKGDSKKLTKKEREE 59 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ-----VIPRSALIDGRS 124 YE+I + A+ + + ID+ NI +AT A+ A+++L+ VI ++G + Sbjct: 60 AYEEIKNKALAVGTAVVDSAVIDRVNILRATKLAMKRALKDLKYHYDIVITDYVKLEGEN 119 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 ++KGD SL+ A ASIIAKV RD++M I HK YPD+ F S+ GYP+ H Sbjct: 120 --------CMPLVKGDEKSLNCACASIIAKVIRDKIMEIYHKIYPDFNFASNKGYPSKTH 171 Query: 185 QQVIKEKGPSCIHRLTFRPLR 205 + +++ + IHR +F PL+ Sbjct: 172 LEKVEKGEYTEIHRKSFSPLK 192 >gi|330993887|ref|ZP_08317819.1| Ribonuclease HII [Gluconacetobacter sp. SXCC-1] gi|329759155|gb|EGG75667.1| Ribonuclease HII [Gluconacetobacter sp. SXCC-1] Length = 217 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 80/188 (42%), Positives = 116/188 (61%), Gaps = 8/188 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS--A 79 VAG+DEVGRG LAGPVV AA++ P ++P ++DSKK+ R LY+ + +S Sbjct: 14 VAGVDEVGRGPLAGPVVAAAVMF-PGSVPGVLADRLDDSKKLKPALRARLYDVLLASPDV 72 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 +I + +AS I+++NI +A+ A+ AV L P L+DG + P D C A V+ G Sbjct: 73 LIGVGAASVAEIERYNILRASWLAMQRAVGRLPRSPEFILVDGNAAP-DFGCPAQCVVGG 131 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D ISLSIAAAS++AKV RDRLM +++P YG++ + GY TA H+ + +G S HR Sbjct: 132 DGISLSIAAASVVAKVIRDRLMARLARRWPAYGWERNAGYGTAIHRAGLLAQGASPHHRA 191 Query: 200 TFRPLRNL 207 F +R + Sbjct: 192 AFGTVRRI 199 >gi|254499206|ref|ZP_05111886.1| RNase H ribonuclease [Legionella drancourtii LLAP12] gi|254351596|gb|EET10451.1| RNase H ribonuclease [Legionella drancourtii LLAP12] Length = 187 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 84/185 (45%), Positives = 112/185 (60%), Gaps = 8/185 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG LAG VV AA+IL +P G+ DSKK++ KKR+ L +I A+ + Sbjct: 7 IAGVDEVGRGPLAGAVVTAAVILKEPIE---GLADSKKLTPKKRKLLSLQIQERALAFAY 63 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSI 142 A ID NIH+ATL A+ AVE L + P L+DG P +PC+A +I+GDS+ Sbjct: 64 GRAEVDEIDALNIHQATLLAMRRAVEALPIKPDEVLVDGAHAPRLAVPCRA--IIQGDSL 121 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKV RD M YP YGF H GYPT H++ + GP IHR ++ Sbjct: 122 IPEISAASILAKVLRDEEMEALDAIYPGYGFAGHKGYPTVAHREALVHLGPCVIHRRSYA 181 Query: 203 PLRNL 207 P+ L Sbjct: 182 PVAAL 186 >gi|302525179|ref|ZP_07277521.1| ribonuclease HII [Streptomyces sp. AA4] gi|302434074|gb|EFL05890.1| ribonuclease HII [Streptomyces sp. AA4] Length = 257 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 76/194 (39%), Positives = 114/194 (58%), Gaps = 6/194 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN---IPFGINDSKKISHKKR 68 + L+ + + + PVAG+DE G GA AGP+VVA+ +L P + +P + DSK ++ K R Sbjct: 3 WGLQGALERRGLGPVAGVDEAGAGACAGPLVVASCVLRPGDAARLPE-LTDSKMLTAKAR 61 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + +Y+++ A+ S+ + +D I L+ + AV L+ P L DG +P Sbjct: 62 DRVYDRVLQRALDYSVIVIPSEQVDLLGIRVMNLEGMRRAVAGLRTHPGYVLTDGFPVP- 120 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +P AVIKGD SIAAAS++AKVTRDR+M H++ P YGFD H GY T+ H Sbjct: 121 GIPAPNVAVIKGDRSVASIAAASVLAKVTRDRIMAGLHEELPVYGFDVHKGYSTSDHLAA 180 Query: 188 IKEKGPSCIHRLTF 201 + E GPS +HR ++ Sbjct: 181 LSEHGPSPVHRWSY 194 >gi|226313196|ref|YP_002773090.1| ribonuclease HII [Brevibacillus brevis NBRC 100599] gi|226096144|dbj|BAH44586.1| ribonuclease HII [Brevibacillus brevis NBRC 100599] Length = 258 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 85/195 (43%), Positives = 110/195 (56%), Gaps = 7/195 (3%) Query: 18 VREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 V EK M+ + GIDEVGRG LAGPVV A+ L + G+NDSKKI RE Sbjct: 63 VYEKAMFDKGHQYIFGIDEVGRGPLAGPVVACAVCLPKDFYLPGLNDSKKIPVSTREAFC 122 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I A+ + I ID NI AT +A+ A++ + P LID + + C Sbjct: 123 EIIQRDALAVGIGIVDAARIDAINILAATKEAMKLAIQQASIAPDVLLIDAVQL-TGMNC 181 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +I GD+ S+SIAAASI+AKVTRDRLM ++YP YGFD H GY T +H I Sbjct: 182 EQVPIIGGDAKSVSIAAASIVAKVTRDRLMAQYAEEYPAYGFDKHAGYGTPEHLAAISRF 241 Query: 192 GPSCIHRLTFRPLRN 206 GP+ IHR TF ++ Sbjct: 242 GPTPIHRKTFTGVKE 256 >gi|188586001|ref|YP_001917546.1| RNase HII [Natranaerobius thermophilus JW/NM-WN-LF] gi|229470478|sp|B2A2P0|RNH2_NATTJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|179350688|gb|ACB84958.1| RNase HII [Natranaerobius thermophilus JW/NM-WN-LF] Length = 198 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 83/187 (44%), Positives = 116/187 (62%), Gaps = 3/187 (1%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAII 81 M GIDE G GA A V V+A +LDP I + DSK+++ KKRE L E+I A+ Sbjct: 1 MMYYCGIDEAGFGAGAAQVYVSACVLDPQKPINESLTDSKQLTPKKRELLAEEIKQDALT 60 Query: 82 -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I++AS + I+K NI KAT+ A+ ++E L V P IDG + PE +P V+KGD Sbjct: 61 WCIATASVEEIEKLNIRKATILAMKRSLEGLTVKPDMVYIDGINSPE-VPFPVETVVKGD 119 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S +I+AASI+AKV RD M ++YP+YGF H GY T H + I++ GPS IHR T Sbjct: 120 SKIPAISAASILAKVARDNRMLEYDEQYPEYGFKDHKGYLTKNHIKAIQKYGPSPIHRKT 179 Query: 201 FRPLRNL 207 ++P++ + Sbjct: 180 YKPIKKI 186 >gi|58696709|ref|ZP_00372256.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila simulans] gi|58698315|ref|ZP_00373232.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila ananassae] gi|58535188|gb|EAL59270.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila ananassae] gi|58537106|gb|EAL60222.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila simulans] Length = 180 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 80/177 (45%), Positives = 114/177 (64%), Gaps = 2/177 (1%) Query: 29 IDEVGRGALAGPVVVAAII-LDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87 +DEVGRG LAGPV+ AA++ +D N I GINDSKK++ + R+ LYEKI S A I AS Sbjct: 1 MDEVGRGPLAGPVISAAVVFIDRNTIIDGINDSKKLTPQCRQVLYEKIISVAKFGIGMAS 60 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 + I+ +NI +AT ++ A+ +L + L+DG PE + Q +++ GD++S SIA Sbjct: 61 VEEINSYNILQATKLSMKRALIDLDLELDYVLVDGNQPPE-VKWQVKSIVNGDNLSTSIA 119 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 AASI+AKVTRDRLM+ H K+P+Y + + GY T +H I G + HR F P+ Sbjct: 120 AASIVAKVTRDRLMQELHNKHPEYNWYKNKGYGTKEHLNAIGLYGITEHHRRNFAPI 176 >gi|325570947|ref|ZP_08146566.1| ribonuclease HII [Enterococcus casseliflavus ATCC 12755] gi|325156273|gb|EGC68457.1| ribonuclease HII [Enterococcus casseliflavus ATCC 12755] Length = 254 Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 94/200 (47%), Positives = 127/200 (63%), Gaps = 5/200 (2%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E FE EA ++ +AG+DEVGRG LAGPVV AA+IL G+NDSK++S KK Sbjct: 57 EMMRFENEAF--QQGARFIAGLDEVGRGPLAGPVVSAAVILPKECQILGLNDSKQLSAKK 114 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 REEL+ +I + A+ + I S + ID+ NI++A+ A+ A+ +L V P LID +I Sbjct: 115 REELFIEIQNKAVAVGIGVVSPEEIDRINIYQASRLAMKEALIDLAVKPEHLLIDAMTIE 174 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D+P Q+ +IKGD+ S+SIAAASIIAKV RD LM+ H YP YGFD + GY T H + Sbjct: 175 TDIPQQS--LIKGDARSISIAAASIIAKVYRDNLMKDFHDVYPFYGFDQNAGYGTKVHLE 232 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 + G IHR TF P++ Sbjct: 233 GLAAHGICPIHRKTFAPVKQ 252 >gi|314936593|ref|ZP_07843940.1| ribonuclease HII [Staphylococcus hominis subsp. hominis C80] gi|313655212|gb|EFS18957.1| ribonuclease HII [Staphylococcus hominis subsp. hominis C80] Length = 255 Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 79/183 (43%), Positives = 113/183 (61%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG LAGPVV A+IL+ + G++DSKK+S KR+ L E++ + Sbjct: 74 ICGIDEVGRGPLAGPVVACAVILNKEHQYLGLDDSKKVSATKRKILNEQLKEGVYDYAYG 133 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID+ NI+ AT A+ A+ L+ P LID ++ +P ++IKGD+ S+ Sbjct: 134 IASAEEIDEFNIYNATKLAMERAINQLKQQPNHLLIDAMTLDNAMP--QTSIIKGDAKSV 191 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASI+AK RD LM KYP Y F+ +VGY T H Q +K+ G + HR TF P+ Sbjct: 192 SIAAASIMAKEYRDGLMAEVALKYPGYDFEKNVGYGTKSHLQGLKQLGITPYHRKTFEPV 251 Query: 205 RNL 207 +++ Sbjct: 252 KSM 254 >gi|270308093|ref|YP_003330151.1| ribonuclease HII [Dehalococcoides sp. VS] gi|270153985|gb|ACZ61823.1| ribonuclease HII [Dehalococcoides sp. VS] Length = 211 Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 84/197 (42%), Positives = 110/197 (55%), Gaps = 10/197 (5%) Query: 20 EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREEL 71 EK +W +AG+DE GRG LAGPVV A+I+ P + DSK ++ +KRE L Sbjct: 12 EKQLWKQGFSSIAGLDEAGRGCLAGPVVAGAVIMPPRLKGEWVAMVRDSKVLTLEKREYL 71 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y I S AI + + ID I AT A+ AVE+L P L+D +P D+P Sbjct: 72 YCHIVSMAISFGVGVVDNTQIDCLGIAPATRLAMKQAVEHLDCRPDYLLVDYLKLP-DIP 130 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++ GD++ SIA ASIIAKV+RDRLM YP Y H GY TA H + I + Sbjct: 131 LPQKGIVDGDALCFSIACASIIAKVSRDRLMCELDATYPGYHLAKHKGYGTALHMECISQ 190 Query: 191 KGPSCIHRLTFRPLRNL 207 KG S IHR TF PL+++ Sbjct: 191 KGISPIHRRTFAPLKSM 207 >gi|310828460|ref|YP_003960817.1| hypothetical protein ELI_2873 [Eubacterium limosum KIST612] gi|308740194|gb|ADO37854.1| hypothetical protein ELI_2873 [Eubacterium limosum KIST612] Length = 262 Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 80/177 (45%), Positives = 112/177 (63%), Gaps = 3/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + G DEVGRG LAGPVV AA+IL ++ ++DSKK+S K RE L +I + A+ ++I Sbjct: 83 IGGSDEVGRGPLAGPVVCAAVILPRDSAILHVDDSKKLSAKMREALDVQIRAEALSVAIG 142 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + + ID NI +AT A+ AV L P LID +I + + ++ GD+ Sbjct: 143 LRTPEQIDALNILEATKSAMSEAVSQLDPQPDLMLIDALTI--ETQAEVRGIVHGDATCY 200 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASI+AKV RD+LM H++YP+YGFD +VGY TA+H IK+ G + IHR +F Sbjct: 201 SIAAASIVAKVYRDKLMHAYHEQYPEYGFDRNVGYGTAEHIAAIKKYGLTPIHRRSF 257 >gi|114797072|ref|YP_761434.1| ribonuclease HII [Hyphomonas neptunium ATCC 15444] gi|123128500|sp|Q0BYK9|RNH2_HYPNA RecName: Full=Ribonuclease HII; Short=RNase HII gi|114737246|gb|ABI75371.1| ribonuclease HIII [Hyphomonas neptunium ATCC 15444] Length = 207 Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 81/195 (41%), Positives = 104/195 (53%), Gaps = 15/195 (7%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISSA 86 G+DE GRG AGPV AA+ILDP G+ DSKK+S K R+ L I A+ ++ A Sbjct: 9 GVDEAGRGPWAGPVTAAAVILDPAQPIEGLTDSKKLSEKARDRLAPLIRERALAWCVAEA 68 Query: 87 SHQYIDKHNIHKATLDAIYHAV--------------ENLQVIPRSALIDGRSIPEDLPCQ 132 S + ID NI +AT A+ A+ E + LIDG ++P DLP Sbjct: 69 SVEEIDTLNIRQATFLAMRRAILGQSRTDQDRSGQFETVSATAGLILIDGNALPGDLPAP 128 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A A+IKGD +I+AASI+AK RD M YP YGF H GY TA H + G Sbjct: 129 ARAIIKGDLTEPAISAASILAKTHRDAQMASLCNLYPGYGFSGHKGYGTAAHAAALTRLG 188 Query: 193 PSCIHRLTFRPLRNL 207 P +HR +F P+R L Sbjct: 189 PCPVHRQSFAPVRAL 203 >gi|119713524|gb|ABL97577.1| ribonuclease [uncultured marine bacterium EB0_35D03] Length = 191 Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 80/190 (42%), Positives = 107/190 (56%), Gaps = 11/190 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + G+DE GRG L G V+ AA+ N G+ DSKK++ KKRE Y +I S+ Sbjct: 3 IIGVDEAGRGPLVGSVIAAAVAFPENFYLEGLTDSKKLTEKKRESFYSQIVQKCNWSVGE 62 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQV--------IPRSALIDGRSIPEDLPCQAFAVI 137 AS ID+ NI +AT+ A+ AV NLQ+ L+DG P+ CQ A++ Sbjct: 63 ASSIEIDQINILQATMLAMKRAVNNLQLELSISDKDDQFKVLVDGNQCPDVGNCQ--AIV 120 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCI 196 KGD I I+AAS+IAKVTRDR M+ YP YGF H GY T +H + + GP I Sbjct: 121 KGDLIEPVISAASVIAKVTRDRQMKELDLNYPGYGFAKHKGYGTREHLDALNKFGPIKGI 180 Query: 197 HRLTFRPLRN 206 HR +F P++N Sbjct: 181 HRASFAPIKN 190 >gi|121634067|ref|YP_974312.1| ribonuclease HII [Neisseria meningitidis FAM18] gi|166226632|sp|A1KRM4|RNH2_NEIMF RecName: Full=Ribonuclease HII; Short=RNase HII gi|120865773|emb|CAM09502.1| ribonuclease HII [Neisseria meningitidis FAM18] Length = 194 Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 81/184 (44%), Positives = 112/184 (60%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83 AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L E I + A+ + Sbjct: 5 TAGVDEAGRGPLVGSVFAAAVILPEIFDLP-GLTDSKKLSEKKRDALAEMIKNQAVAWHV 63 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 ++A + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS Sbjct: 64 AAAGPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKI 123 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M +++P YGFD H GY T +H + +++ G HR F P Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALEKYGVLPEHRRDFAP 183 Query: 204 LRNL 207 +RNL Sbjct: 184 VRNL 187 >gi|46398973|gb|AAS92172.1| RNase H ribonuclease [Legionella pneumophila] gi|46398975|gb|AAS92173.1| RNase H ribonuclease [Legionella pneumophila] Length = 191 Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 82/185 (44%), Positives = 115/185 (62%), Gaps = 8/185 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG LAG VV AA+IL P G+ DSKK+S K+R L +I A+ + Sbjct: 9 MAGVDEVGRGPLAGAVVTAAVILKK---PIDGLTDSKKLSPKQRNLLAVRIKEEALAFAY 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSI 142 A + ID+ NIH ATL A+ AVE L + P + ++DG P+ ++PC+A +++GDS+ Sbjct: 66 GRAEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVVVDGAFTPQLNIPCKA--IVQGDSL 123 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKV RD M K YP YGF H GY T H++ + GP IHR ++ Sbjct: 124 IPEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYS 183 Query: 203 PLRNL 207 P+ +L Sbjct: 184 PVADL 188 >gi|152999991|ref|YP_001365672.1| ribonuclease HII [Shewanella baltica OS185] gi|166226651|sp|A6WLC0|RNH2_SHEB8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|151364609|gb|ABS07609.1| Ribonuclease H [Shewanella baltica OS185] Length = 210 Score = 137 bits (346), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 85/188 (45%), Positives = 114/188 (60%), Gaps = 6/188 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP+ G+NDSKK+S K+RE L+++I A+ + Sbjct: 20 IAGVDEVGRGPLVGDVVTAAVILDPSKPISGLNDSKKLSEKRREALFDEICDKALCYQVG 79 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-----EDLPCQAFAVIKG 139 AS ID+ NI AT+ A+ AV L + P L+DG P + ++IKG Sbjct: 80 RASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRSPIFVAHNGAELTSHSIIKG 139 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D + SI+AASIIAKVTRDR M + YP YGF H GYPT H + I E G +R Sbjct: 140 DGLIASISAASIIAKVTRDREMDVLDAAYPQYGFAKHKGYPTKAHFEAIAEHGVFDQYRK 199 Query: 200 TFRPLRNL 207 +F+P++ L Sbjct: 200 SFKPVKAL 207 >gi|120599538|ref|YP_964112.1| ribonuclease HII [Shewanella sp. W3-18-1] gi|146292465|ref|YP_001182889.1| ribonuclease HII [Shewanella putrefaciens CN-32] gi|166226653|sp|A4Y557|RNH2_SHEPC RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226655|sp|A1RLL3|RNH2_SHESW RecName: Full=Ribonuclease HII; Short=RNase HII gi|120559631|gb|ABM25558.1| RNase HII [Shewanella sp. W3-18-1] gi|145564155|gb|ABP75090.1| RNase HII [Shewanella putrefaciens CN-32] Length = 209 Score = 137 bits (346), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 87/187 (46%), Positives = 114/187 (60%), Gaps = 5/187 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S K+RE L+++I A+ I Sbjct: 20 IAGVDEVGRGPLVGDVVTAAVILDPNQPISGLNDSKKLSEKRREALFDEICEKALCYHIG 79 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP----EDLPCQAFAVIKGD 140 AS ID+ NI AT+ A+ AV L + P+ L+DG P + ++IKGD Sbjct: 80 RASPAEIDELNILHATMLAMQRAVAGLNLAPKLVLVDGNRSPFFSHNSQSIVSHSIIKGD 139 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + SI+AASIIAKVTRDR M YP YGF H GYPT H + I E G +R + Sbjct: 140 GLIASISAASIIAKVTRDREMDALDAAYPQYGFAKHKGYPTKAHFEAIAEHGVFDQYRKS 199 Query: 201 FRPLRNL 207 F+P++ L Sbjct: 200 FKPVKAL 206 >gi|329118448|ref|ZP_08247154.1| ribonuclease HII [Neisseria bacilliformis ATCC BAA-1200] gi|327465494|gb|EGF11773.1| ribonuclease HII [Neisseria bacilliformis ATCC BAA-1200] Length = 198 Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 79/182 (43%), Positives = 109/182 (59%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85 AG+DE GRG LAG V AA+IL + G+ DSKK+S KKR+ L +I + A+ S++ Sbjct: 7 AGVDEAGRGPLAGSVFAAAVILPEHYDLPGLADSKKLSEKKRDALAAQIKAQAVAWSVAE 66 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A I + NI A + A+ AVENL V P+ LIDG IP+ LP A A++KGD+ + Sbjct: 67 AGVDEIARLNILHAAMLAMRRAVENLAVPPQRILIDGNRIPDGLPAPAEAIVKGDAKIPA 126 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AK RD M ++P YGF+ H GY T +H ++ G HR F P+R Sbjct: 127 ISAASILAKTARDAQMYALAARHPQYGFERHKGYGTPEHLAALRRHGALPEHRRGFAPVR 186 Query: 206 NL 207 + Sbjct: 187 EI 188 >gi|187917927|ref|YP_001883490.1| ribonuclease HII [Borrelia hermsii DAH] gi|238689305|sp|B2S1N3|RNH2_BORHD RecName: Full=Ribonuclease HII; Short=RNase HII gi|119860775|gb|AAX16570.1| ribonuclease HII [Borrelia hermsii DAH] Length = 181 Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 79/178 (44%), Positives = 111/178 (62%), Gaps = 1/178 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + GIDEVGRG + GPV+ AA+I N N ++DSKK+ KRE L I ++ + + Sbjct: 2 ICGIDEVGRGCIFGPVLSAAVIFKGNPNFLNELDDSKKLKKAKREYLSSLILENSYYAFA 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S++ IDK NIH A+L A+ A E L + L+DG+ IP+ + A+IKGDSI Sbjct: 62 EVSNETIDKINIHHASLLAMQIAYEKLDINCDLVLVDGKFIPKIKAKKIQAIIKGDSIIN 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I AASIIAKV RD+LM +K YP Y + + GYPT +H++ IK+ G S +HR +F+ Sbjct: 122 EIKAASIIAKVQRDKLMDEYNKIYPLYALNKNKGYPTKEHKEAIKKHGISNLHRRSFK 179 >gi|332295819|ref|YP_004437742.1| Ribonuclease H [Thermodesulfobium narugense DSM 14796] gi|332178922|gb|AEE14611.1| Ribonuclease H [Thermodesulfobium narugense DSM 14796] Length = 210 Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 79/181 (43%), Positives = 105/181 (58%), Gaps = 1/181 (0%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-I 80 + +P G+DEVGRGALAGP+VV A+ D + + G+ DSK + ++R EL + I A Sbjct: 18 DFFPSLGMDEVGRGALAGPLVVGAVYFDKDYMIDGLKDSKLLKDQERRELCDIIKRKASY 77 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 SI A H IDK NI+ A + A A+ N+ +P + DG + P + K D Sbjct: 78 WSIGWAYHWEIDKLNIYSALVLACKRAILNMNFLPEAIFFDGSLKLKTFPFKHIVFPKAD 137 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + S+AAASIIAKV RD M K YPDY FD H GY T H +V+++KG S IHR T Sbjct: 138 RLVPSVAAASIIAKVARDDYMINISKYYPDYLFDIHKGYGTKFHLEVLEKKGLSKIHRKT 197 Query: 201 F 201 F Sbjct: 198 F 198 >gi|145224747|ref|YP_001135425.1| ribonuclease HII [Mycobacterium gilvum PYR-GCK] gi|315445077|ref|YP_004077956.1| RNase HII [Mycobacterium sp. Spyr1] gi|189043630|sp|A4TE84|RNH2_MYCGI RecName: Full=Ribonuclease HII; Short=RNase HII gi|145217233|gb|ABP46637.1| RNase HII [Mycobacterium gilvum PYR-GCK] gi|315263380|gb|ADU00122.1| RNase HII [Mycobacterium sp. Spyr1] Length = 253 Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 83/202 (41%), Positives = 118/202 (58%), Gaps = 10/202 (4%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREEL 71 LE+ + + PVAG+DEVGRGA AGP+VVAA IL PN + ++DSKK++ +RE L Sbjct: 20 LESALYRAGLGPVAGVDEVGRGACAGPLVVAACILGPNRLESLSALDDSKKLNESERERL 79 Query: 72 YEKITSSAI----ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + I A+ + I S +D+ +H A ++ + AV L V P L DG +P Sbjct: 80 FPLIRRYAVAFHVVFIPSVE---VDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVP- 135 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP + V+ GD+ + IAAAS++AKV+RDRLM +++P YGF H GY T H Sbjct: 136 GLPMPSLPVVGGDAAAACIAAASVLAKVSRDRLMVAMDQEHPGYGFADHKGYSTRAHSAA 195 Query: 188 IKEKGPSCIHRLTFRPLRNLSV 209 + + GPS HR +F +R L V Sbjct: 196 LNDLGPSTQHRFSFINVRRLVV 217 >gi|17546137|ref|NP_519539.1| ribonuclease HII [Ralstonia solanacearum GMI1000] gi|39932439|sp|Q8XZH7|RNH2_RALSO RecName: Full=Ribonuclease HII; Short=RNase HII gi|17428433|emb|CAD15120.1| probable ribonuclease hII (rnase hII) protein [Ralstonia solanacearum GMI1000] Length = 236 Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 79/186 (42%), Positives = 114/186 (61%), Gaps = 11/186 (5%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISSA 86 G+DE GRG LAGPV AA++L+P G+ DSK ++ KKRE LY++I A+ ++ A Sbjct: 31 GVDEAGRGPLAGPVTAAAVVLNPRKPIQGLADSKVLTAKKREALYDEIVEKALAWHVAEA 90 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLPCQAFAV---IKGD 140 + + ID+ NI AT+ A+ AV+ + V+P +DG P+ AFAV +KGD Sbjct: 91 TVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVDGNRCPQ----VAFAVEAIVKGD 146 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 ++ +I+AASI+AKVTRDR + H +P YGFD H GY T +H I+ G + HR + Sbjct: 147 ALVPAISAASILAKVTRDRQLAALHIAFPQYGFDVHAGYGTPQHLAAIERHGVTPHHRRS 206 Query: 201 FRPLRN 206 F P+R Sbjct: 207 FAPVRR 212 >gi|269121650|ref|YP_003309827.1| ribonuclease H [Sebaldella termitidis ATCC 33386] gi|268615528|gb|ACZ09896.1| Ribonuclease H [Sebaldella termitidis ATCC 33386] Length = 197 Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 79/177 (44%), Positives = 107/177 (60%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84 +AG+DE GRG LAGPVV AA+I++ INDSKK++ KKRE+LY I + I Sbjct: 15 IAGVDEAGRGPLAGPVVAAAVIIEDYFEELEEINDSKKLTEKKREKLYAVIREKRKVGIG 74 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 +A + IDK NI AT A+ A+E + L+DG + + +IKGD SL Sbjct: 75 TADEKEIDKINILNATFLAMRRALEQIDNYD-IVLVDGNHKIREYSGRQEEIIKGDGRSL 133 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASI+AKV RD +M+ ++YPDY F+ H GY T H++++ G IHR TF Sbjct: 134 SIAAASIVAKVYRDNIMKDFARQYPDYRFEKHKGYGTKLHRELLHAHGACKIHRKTF 190 >gi|51246658|ref|YP_066542.1| ribonuclease HII [Desulfotalea psychrophila LSv54] gi|81641223|sp|Q6AJE5|RNH2_DESPS RecName: Full=Ribonuclease HII; Short=RNase HII gi|50877695|emb|CAG37535.1| probable ribonuclease HII [Desulfotalea psychrophila LSv54] Length = 225 Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 91/202 (45%), Positives = 128/202 (63%), Gaps = 7/202 (3%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + +F LE + +AG DEVGRG LAGPV+ AA+IL + DSK +SHKKR Sbjct: 13 QDNFFLERSLHNLGYDIIAGTDEVGRGPLAGPVIAAAVILPADCDHHLFQDSKILSHKKR 72 Query: 69 EELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQV---IPRSALIDGR- 123 L++ +T A I I + S + ID+ NI +A+L A+ A+E+L P L+DG+ Sbjct: 73 VHLFQLLTEIDAFIGIGTVSEKIIDEINILQASLLAMKLAIEDLASNCSRPSFLLVDGKF 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P DL A+IKG+S S SIAAASI+AKVTRDR M+ H +YP YGF+++ GYPT K Sbjct: 133 KVPIDLA--QVALIKGESKSASIAAASIVAKVTRDRYMQDLHSQYPQYGFNTNSGYPTKK 190 Query: 184 HQQVIKEKGPSCIHRLTFRPLR 205 H++ I E G +C HR +F+ ++ Sbjct: 191 HREAIGEFGITCYHRRSFKGVK 212 >gi|46398965|gb|AAS92168.1| RNase H ribonuclease [Legionella pneumophila] gi|46398967|gb|AAS92169.1| RNase H ribonuclease [Legionella pneumophila] Length = 191 Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 82/185 (44%), Positives = 115/185 (62%), Gaps = 8/185 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG LAG VV AA+IL P G+ DSKK+S K+R L +I A+ + Sbjct: 9 MAGVDEVGRGPLAGAVVTAAVILKK---PIDGLTDSKKLSSKQRNLLAIRIKEEALAFAY 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSI 142 A + ID+ NIH ATL A+ AVE L + P + ++DG P+ ++PC+A +++GDS+ Sbjct: 66 GRAEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVVVDGAFTPQLNVPCKA--IVQGDSL 123 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKV RD M K YP YGF H GY T H++ + GP IHR ++ Sbjct: 124 IPEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYS 183 Query: 203 PLRNL 207 P+ +L Sbjct: 184 PVADL 188 >gi|227510328|ref|ZP_03940377.1| ribonuclease HII [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189980|gb|EEI70047.1| ribonuclease HII [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 255 Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 81/194 (41%), Positives = 116/194 (59%), Gaps = 8/194 (4%) Query: 20 EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E++ W VAG+DEVGRG LAGPVV A IL + +NDSK+++ + R L + Sbjct: 63 ERSFWHRGVNYVAGVDEVGRGPLAGPVVACATILPRDFDLIQVNDSKQLTPEIRARLAPQ 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI I + ++ ID+ NI++AT A+ AV NL P ++D I +P Sbjct: 123 IKREAISIGLGLVDNKGIDRLNIYEATRVAMKQAVNNLTQQPDEIIVDAMQIA--VPIHQ 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGD+ S+S++AASI+AKV RD LM ++YP+Y F + GY TAKH +K+ G Sbjct: 181 TRLIKGDAKSISVSAASIVAKVYRDTLMDQYAQQYPEYDFKHNAGYGTAKHLSALKKYGA 240 Query: 194 SCIHRLTFRPLRNL 207 + IHR TF P++N Sbjct: 241 TPIHRKTFAPVKNF 254 >gi|58578839|ref|YP_197051.1| ribonuclease HII [Ehrlichia ruminantium str. Welgevonden] gi|58616897|ref|YP_196096.1| ribonuclease HII [Ehrlichia ruminantium str. Gardel] gi|75356600|sp|Q5FFD4|RNH2_EHRRG RecName: Full=Ribonuclease HII; Short=RNase HII gi|58416509|emb|CAI27622.1| Ribonuclease HII [Ehrlichia ruminantium str. Gardel] gi|58417465|emb|CAI26669.1| Ribonuclease HII [Ehrlichia ruminantium str. Welgevonden] Length = 220 Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 83/187 (44%), Positives = 112/187 (59%), Gaps = 5/187 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + G+DEVG G+LAGPVV AA+ N INDSKK++ K R+++Y KI + SI Sbjct: 29 IVGVDEVGYGSLAGPVVSAAVFFPNYNNETTQDINDSKKLTPKTRQKIYNKIITRVKWSI 88 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQ--VIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 A ID++NI AT A+ A+ L + +IDG IP ++P A A+I GD+ Sbjct: 89 GFAHIFEIDEYNILNATHIAMKRALTGLNAHIDIDYVIIDGNKIP-NIPWNAQAIIGGDT 147 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IS SIAAASIIAKVTRDRLM H +YP Y ++ + GY T H + + G + HR TF Sbjct: 148 ISTSIAAASIIAKVTRDRLMETLHIQYPQYNWNKNKGYGTKDHITSLYKYGKTIHHRNTF 207 Query: 202 RPLRNLS 208 P+ +S Sbjct: 208 TPISKIS 214 >gi|319425767|gb|ADV53841.1| Ribonuclease H [Shewanella putrefaciens 200] Length = 209 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 87/187 (46%), Positives = 114/187 (60%), Gaps = 5/187 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S K+RE L+++I A+ I Sbjct: 20 IAGVDEVGRGPLVGDVVTAAVILDPNQSISGLNDSKKLSEKRREALFDEICEKALCYHIG 79 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP----EDLPCQAFAVIKGD 140 AS ID+ NI AT+ A+ AV L + P+ L+DG P + ++IKGD Sbjct: 80 RASPAEIDELNILHATMLAMQRAVAGLNLAPKLVLVDGNRSPVFSHNSQSIVSHSIIKGD 139 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + SI+AASIIAKVTRDR M YP YGF H GYPT H + I E G +R + Sbjct: 140 GLIASISAASIIAKVTRDREMDALDAVYPQYGFAKHKGYPTKAHFEAIAEHGVFDQYRKS 199 Query: 201 FRPLRNL 207 F+P++ L Sbjct: 200 FKPVKAL 206 >gi|57238907|ref|YP_180043.1| ribonuclease HII [Ehrlichia ruminantium str. Welgevonden] gi|81637940|sp|Q5HC01|RNH2_EHRRW RecName: Full=Ribonuclease HII; Short=RNase HII gi|57160986|emb|CAH57892.1| ribonuclease HII [Ehrlichia ruminantium str. Welgevonden] Length = 212 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 83/187 (44%), Positives = 112/187 (59%), Gaps = 5/187 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + G+DEVG G+LAGPVV AA+ N INDSKK++ K R+++Y KI + SI Sbjct: 21 IVGVDEVGYGSLAGPVVSAAVFFPNYNNETTQDINDSKKLTPKTRQKIYNKIITRVKWSI 80 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQ--VIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 A ID++NI AT A+ A+ L + +IDG IP ++P A A+I GD+ Sbjct: 81 GFAHIFEIDEYNILNATHIAMKRALTGLNAHIDIDYVIIDGNKIP-NIPWNAQAIIGGDT 139 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IS SIAAASIIAKVTRDRLM H +YP Y ++ + GY T H + + G + HR TF Sbjct: 140 ISTSIAAASIIAKVTRDRLMETLHIQYPQYNWNKNKGYGTKDHITSLYKYGKTIHHRNTF 199 Query: 202 RPLRNLS 208 P+ +S Sbjct: 200 TPISKIS 206 >gi|329121228|ref|ZP_08249855.1| ribonuclease HII [Dialister micraerophilus DSM 19965] gi|327470162|gb|EGF15625.1| ribonuclease HII [Dialister micraerophilus DSM 19965] Length = 264 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/197 (43%), Positives = 130/197 (65%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + +E+ ++ + V GIDEVGRG LAGPV VAA+IL P+ +NDSKK+S +KRE + Sbjct: 56 YAVESEFYKQGIQYVVGIDEVGRGPLAGPVTVAAVILKPHWFIENLNDSKKVSKEKREII 115 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +K+ A+ ISI+ S + ID NI++AT+ A+Y AV+ L++ P++ ++D + +P Sbjct: 116 SKKVHEEALAISITDLSVEEIDTLNIYQATMLAMYQAVKKLEIKPQAVIVDAMPLHFQVP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 C++ I GDS S S+AAASI+AKV RD +M K YP Y F+ + GY T KH + I E Sbjct: 176 CKSL--IHGDSKSASVAAASIVAKVHRDHIMDEYAKIYPGYDFEDNKGYGTKKHMEAIYE 233 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR ++ P++++ Sbjct: 234 LGITPIHRKSYEPVKSI 250 >gi|118586886|ref|ZP_01544320.1| ribonuclease HII [Oenococcus oeni ATCC BAA-1163] gi|118432718|gb|EAV39450.1| ribonuclease HII [Oenococcus oeni ATCC BAA-1163] Length = 209 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/200 (40%), Positives = 121/200 (60%), Gaps = 3/200 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 R F+ E + ++ +AGIDEVGRG +AGPVV + IL N DSK+ + ++R Sbjct: 11 RIRFKFENELNDEGYQIIAGIDEVGRGCVAGPVVACSCILPANFNVSETYDSKRFNKRQR 70 Query: 69 EELYEKIT-SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 L E+I +S + + AS ID+ NI+++ A+ +V NL +P + LID ++ Sbjct: 71 FLLEEEIKKTSCLFAFGEASVTEIDRINIYQSARLAMKRSVMNLLQMPDALLIDAMAV-- 128 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 DL + +I GD +S SIAAASI+AK RDR+M +KYP+YGF+ +VGY T++ ++ Sbjct: 129 DLNLKQLKIIHGDQLSNSIAAASILAKCHRDRIMIKMAEKYPEYGFERNVGYLTSEAKKA 188 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 + E G + IHR TF P+ L Sbjct: 189 LLEYGITPIHRKTFAPISKL 208 >gi|7240593|gb|AAB33869.2| RNase HII [Caulobacter vibrioides] Length = 192 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 84/179 (46%), Positives = 107/179 (59%), Gaps = 3/179 (1%) Query: 29 IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSAS 87 +++ GR AGPV A+ILDP+ IP G+NDSKK+S K R L E+I AI + AS Sbjct: 3 VEKNGRAPWAGPVSAGAVILDPDRIPKGLNDSKKLSAKARAALEEEIKDVAISWCVGLAS 62 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 + I + NI A A+ AVE L V P AL+DG + LPC VIKGDS+S SIA Sbjct: 63 IEEIAQLNILHAAGLAMRRAVEGLAVTPAFALVDG-NYAFKLPCPVKTVIKGDSLSCSIA 121 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 AASI+AK RDR+M A YP Y F H GY H + ++ GPS IHRL + P++ Sbjct: 122 AASILAKEARDRIMIEADALYPGY-FAGHKGYHAKVHVEGLRRLGPSPIHRLGWAPVKT 179 >gi|154497939|ref|ZP_02036317.1| hypothetical protein BACCAP_01919 [Bacteroides capillosus ATCC 29799] gi|150272929|gb|EDN00086.1| hypothetical protein BACCAP_01919 [Bacteroides capillosus ATCC 29799] Length = 210 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 79/191 (41%), Positives = 114/191 (59%), Gaps = 2/191 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +E+E +E+ + G DE G G LAGPV A+IL I G+NDSKK++ K+R+ L Sbjct: 10 WEIERSCKERGYQLICGADEAGAGPLAGPVYAGAVILPEGLILEGLNDSKKVTPKRRDRL 69 Query: 72 YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +E+I AI +++S + ID NI A + A+ A++ L+ P ALIDG + + Sbjct: 70 FEEIQEKAIAWAVASVDEKEIDAINILNARMKAMEMAIQALKPAPDYALIDGNR-DKGIT 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 V+KGD S +IAAASI+AKV+RDR M K YP+Y F+ H GY T H +++ + Sbjct: 129 IAHETVVKGDGRSANIAAASILAKVSRDRYMEEMAKLYPEYEFERHKGYGTKLHFELLMK 188 Query: 191 KGPSCIHRLTF 201 GP IHR +F Sbjct: 189 YGPCPIHRRSF 199 >gi|300024712|ref|YP_003757323.1| ribonuclease H [Hyphomicrobium denitrificans ATCC 51888] gi|299526533|gb|ADJ25002.1| Ribonuclease H [Hyphomicrobium denitrificans ATCC 51888] Length = 274 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 81/192 (42%), Positives = 111/192 (57%), Gaps = 7/192 (3%) Query: 20 EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E ++W VAG+DE G LAGPV AA+I P ++DSKK+ R+ L + Sbjct: 64 ETSLWKTGVQFVAGVDEAGMSPLAGPVSAAAVIFAPGTRIADVDDSKKLDAATRDRLAIE 123 Query: 75 ITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I ++AI S+ A + ID+ NI+ A L A+ AVE L P+ LID R I +DL Sbjct: 124 IKATAIAWSVGFAEVEEIDRINIYWAGLLAMRRAVEGLATQPQHVLIDARRI-KDLAIPQ 182 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++KGD+ SL+IAAASI+AK RD LMR +P YGF H GYP +H + + G Sbjct: 183 QPIVKGDAKSLTIAAASILAKTARDALMRKLDGDHPGYGFSKHKGYPVREHLAALTKLGA 242 Query: 194 SCIHRLTFRPLR 205 S +HR +F P+R Sbjct: 243 SPVHRRSFAPVR 254 >gi|300780923|ref|ZP_07090777.1| ribonuclease H [Corynebacterium genitalium ATCC 33030] gi|300532630|gb|EFK53691.1| ribonuclease H [Corynebacterium genitalium ATCC 33030] Length = 215 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 78/193 (40%), Positives = 109/193 (56%), Gaps = 10/193 (5%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREELY 72 E + + + PVAGIDE GRGA GPV +AA +L IP G+ DSKK++ KR LY Sbjct: 11 EVALSKAGLGPVAGIDEAGRGACFGPVTIAACVLPDKPIPALDGLTDSKKLTPAKRASLY 70 Query: 73 EKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + I +S+ ++ I +A +D+ IH A LD AV L + P L+D +P Sbjct: 71 DAILTSSDAHCVVHIPAAE---VDRRGIHNANLDGARLAVAGLGLAPGFTLVDAFRVP-G 126 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L +I GD + IAAAS++AKV+RDRL+ + +PDYG +SH GY TA H + Sbjct: 127 LTMPQLPIIGGDYTARCIAAASVLAKVSRDRLITKMAETFPDYGLESHKGYGTAAHMDAV 186 Query: 189 KEKGPSCIHRLTF 201 + G S HR T+ Sbjct: 187 RRHGASAEHRYTY 199 >gi|119355888|ref|YP_910532.1| ribonuclease H [Chlorobium phaeobacteroides DSM 266] gi|166225181|sp|A1BCI1|RNH2_CHLPD RecName: Full=Ribonuclease HII; Short=RNase HII gi|119353237|gb|ABL64108.1| Ribonuclease H [Chlorobium phaeobacteroides DSM 266] Length = 205 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 79/193 (40%), Positives = 114/193 (59%), Gaps = 10/193 (5%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHKKREE 70 E ++WP ++GIDE GRG LAGPVV AA+I P ++DSKK+S RE+ Sbjct: 6 EYSLWPTLSLISGIDEAGRGPLAGPVVAAAVIFPRWFRPRHAGLDKLDDSKKLSPNLREQ 65 Query: 71 LYEKI-TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L I T +A +++ ID+ NI +AT+ A+ +AV +L P L+DG + Sbjct: 66 LAPTIKTFAAFWAVAVIEPDIIDRINIFQATMQAMNNAVASLHQPPELILVDGNRFMPNA 125 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P ++KGD+ SIAAAS++AK RD +M K+YP+YGF+ H GYPTA H + I+ Sbjct: 126 PIPYETIVKGDAKVFSIAAASVLAKTHRDAIMTAYGKEYPEYGFERHFGYPTASHIKAIE 185 Query: 190 EKGPSCIHRLTFR 202 G + +HR +FR Sbjct: 186 TFGRTPVHRKSFR 198 >gi|150021773|ref|YP_001307127.1| ribonuclease HII [Thermosipho melanesiensis BI429] gi|189043672|sp|A6LP91|RNH2_THEM4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|149794294|gb|ABR31742.1| Ribonuclease H [Thermosipho melanesiensis BI429] Length = 216 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 77/184 (41%), Positives = 114/184 (61%), Gaps = 6/184 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 VAG+DE GRG L GPVV +A++L +GI DSKK++ K+REEL+ +I ++ I Sbjct: 3 VAGVDEAGRGPLFGPVVASAVVLKKE--IYGITDSKKLTLKQREELFMEIIRNSYFGIGF 60 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPR--SALIDGRSIPEDLPCQAFAVIKGDSIS 143 AS IDK NI AT A+ A+ L+ R L+DG+++ D + ++KGD + Sbjct: 61 ASSSEIDKLNILHATELAMNRALAMLERKIRFDMVLVDGKNLKLDYKSKC--IVKGDVLI 118 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASIIAKV RD++M KK+ +Y + H GYPT H ++I++ G + HRLTF+P Sbjct: 119 KEISAASIIAKVVRDKIMTFYSKKFSNYALEKHKGYPTKDHIKLIEKYGLTPEHRLTFKP 178 Query: 204 LRNL 207 + + Sbjct: 179 ITKM 182 >gi|148358904|ref|YP_001250111.1| ribonuclease HII [Legionella pneumophila str. Corby] gi|296106952|ref|YP_003618652.1| ribonuclease HII [Legionella pneumophila 2300/99 Alcoy] gi|166226623|sp|A5IBL5|RNH2_LEGPC RecName: Full=Ribonuclease HII; Short=RNase HII gi|148280677|gb|ABQ54765.1| ribonuclease HII [Legionella pneumophila str. Corby] gi|295648853|gb|ADG24700.1| ribonuclease HII [Legionella pneumophila 2300/99 Alcoy] Length = 191 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/185 (44%), Positives = 115/185 (62%), Gaps = 8/185 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG LAG VV AA+IL P G+ DSKK+S K+R L +I A+ + Sbjct: 9 MAGVDEVGRGPLAGAVVTAAVILKK---PIDGLTDSKKLSPKQRNLLAIRIKEEALAFAY 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSI 142 A + ID+ NIH ATL A+ AVE L + P + ++DG P+ ++PC+A +++GDS+ Sbjct: 66 GRAEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVVVDGAFTPQLNIPCKA--IVQGDSL 123 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKV RD M K YP YGF H GY T H++ + GP IHR ++ Sbjct: 124 VPEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCRIHRRSYS 183 Query: 203 PLRNL 207 P+ +L Sbjct: 184 PVADL 188 >gi|261419405|ref|YP_003253087.1| ribonuclease HII [Geobacillus sp. Y412MC61] gi|319766220|ref|YP_004131721.1| ribonuclease H [Geobacillus sp. Y412MC52] gi|261375862|gb|ACX78605.1| Ribonuclease H [Geobacillus sp. Y412MC61] gi|317111086|gb|ADU93578.1| Ribonuclease H [Geobacillus sp. Y412MC52] Length = 260 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/183 (46%), Positives = 119/183 (65%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AGIDE GRG LAGPVV AA+IL + G++DSK+++ +KRE L+ +I + A+ I I Sbjct: 73 IAGIDEAGRGPLAGPVVAAAVILPKDAYLPGLDDSKRLTPEKREALFAQIEACAVAIGIG 132 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S ID+ NI++AT A+ AV L P L+D ++P LP Q +IKGD+ S Sbjct: 133 IVSAAEIDERNIYEATRQAMAKAVNALSPPPEHLLVDAMAVPCPLPQQR--LIKGDANSA 190 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAAS+IAKVTRDR M+ ++YP YGF H+GY T +H + I+ G + HR +F P+ Sbjct: 191 SIAAASVIAKVTRDRWMKELDRRYPQYGFARHMGYGTPEHFEAIRRYGVTPEHRRSFAPV 250 Query: 205 RNL 207 R + Sbjct: 251 REV 253 >gi|46398977|gb|AAS92174.1| RNase H ribonuclease [Legionella pneumophila] Length = 191 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/185 (44%), Positives = 115/185 (62%), Gaps = 8/185 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG LAG VV AA+IL P G+ DSKK+S K+R L +I A+ + Sbjct: 9 MAGVDEVGRGPLAGAVVTAAVILKK---PIDGLTDSKKLSPKQRNLLAIRIKEEALAFAY 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSI 142 A + ID+ NIH ATL A+ AVE L + P + ++DG P+ ++PC+A +++GDS+ Sbjct: 66 GRAEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVVVDGAFTPQLNIPCKA--IVQGDSL 123 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKV RD M K YP YGF H GY T H++ + GP IHR ++ Sbjct: 124 IPEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYS 183 Query: 203 PLRNL 207 P+ +L Sbjct: 184 PVADL 188 >gi|297530620|ref|YP_003671895.1| ribonuclease H [Geobacillus sp. C56-T3] gi|297253872|gb|ADI27318.1| Ribonuclease H [Geobacillus sp. C56-T3] Length = 260 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/183 (46%), Positives = 119/183 (65%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AGIDE GRG LAGPVV AA+IL + G++DSK+++ +KRE L+ +I + A+ I I Sbjct: 73 IAGIDEAGRGPLAGPVVAAAVILPKDAYLPGLDDSKRLTPEKREALFAQIEACAVAIGIG 132 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S ID+ NI++AT A+ AV L P L+D ++P LP Q +IKGD+ S Sbjct: 133 IVSAAEIDERNIYEATRQAMAKAVNALSPPPEHLLVDAMAVPCPLPQQR--LIKGDANSA 190 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAAS+IAKVTRDR M+ ++YP YGF H+GY T +H + I+ G + HR +F P+ Sbjct: 191 SIAAASVIAKVTRDRWMKELDRRYPQYGFARHMGYGTPEHFEAIRRYGVTPEHRRSFAPV 250 Query: 205 RNL 207 R + Sbjct: 251 REV 253 >gi|210622543|ref|ZP_03293236.1| hypothetical protein CLOHIR_01184 [Clostridium hiranonis DSM 13275] gi|210154178|gb|EEA85184.1| hypothetical protein CLOHIR_01184 [Clostridium hiranonis DSM 13275] Length = 256 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 87/189 (46%), Positives = 117/189 (61%), Gaps = 4/189 (2%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 EK +AG+DE GRG LAGPVV A ++L GINDSKK+S KR EL++ I A Sbjct: 69 EKGYTYIAGVDEAGRGPLAGPVVAAVVVLKQGTKIPGINDSKKLSEDKRNELFDIIKEEA 128 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + I ++ ID++NI AT A+ A+ L+ P L D IP D+ + ++IK Sbjct: 129 LDYGIGIVGNEEIDEYNILNATYMAMRKALNCLKKQPDYILADAVHIP-DVDIEQNSIIK 187 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD+ S+SIAAASI+AKVTRD LM + YP+YGF H GY TA+H + I E G + IHR Sbjct: 188 GDAKSISIAAASILAKVTRDSLMYQYDEIYPEYGFAHHKGYGTAEHYKAIDENGITPIHR 247 Query: 199 LTFRPLRNL 207 +F L+N+ Sbjct: 248 KSF--LKNV 254 >gi|56419740|ref|YP_147058.1| ribonuclease HII [Geobacillus kaustophilus HTA426] gi|81347633|sp|Q5L0P0|RNH2_GEOKA RecName: Full=Ribonuclease HII; Short=RNase HII gi|56379582|dbj|BAD75490.1| ribonuclease HII [Geobacillus kaustophilus HTA426] Length = 260 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/183 (46%), Positives = 119/183 (65%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AGIDE GRG LAGPVV AA+IL + G++DSK+++ +KRE L+ +I + A+ I I Sbjct: 73 IAGIDEAGRGPLAGPVVAAAVILPKDAYLPGLDDSKRLTPEKREALFAQIEACAVAIGIG 132 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S ID+ NI++AT A+ AV L P L+D ++P LP Q +IKGD+ S Sbjct: 133 IVSAAEIDERNIYEATRQAMAKAVNALSPPPEHLLVDAMAVPCPLPQQR--LIKGDANSA 190 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAAS+IAKVTRDR M+ ++YP YGF H+GY T +H + I+ G + HR +F P+ Sbjct: 191 SIAAASVIAKVTRDRWMKELDRRYPQYGFARHMGYGTPEHFEAIRRYGVTPEHRRSFAPV 250 Query: 205 RNL 207 R + Sbjct: 251 REV 253 >gi|217964584|ref|YP_002350262.1| ribonuclease HII (RNase HII) [Listeria monocytogenes HCC23] gi|254807979|sp|B8DHN2|RNH2_LISMH RecName: Full=Ribonuclease HII; Short=RNase HII gi|217333854|gb|ACK39648.1| ribonuclease HII (RNase HII) [Listeria monocytogenes HCC23] gi|307570852|emb|CAR84031.1| rnhB [Listeria monocytogenes L99] Length = 261 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 90/204 (44%), Positives = 128/204 (62%), Gaps = 5/204 (2%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 N + E +E + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK++ Sbjct: 53 NKLEEMKQYETDLF--QQGYKYIAGVDEVGRGPLAGPVVAAAVILPDDFSVVGINDSKQL 110 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S KR+ LYE I + AI + + H ID+ NI++AT A+ A++ LQ P LID Sbjct: 111 SEAKRDALYETIQTEAIAVGVGIIEHNVIDQVNIYEATKLAMRAALDQLQPEPDFVLID- 169 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 ++P ++IKGD+ S+SIAAASIIAKVTRDRLM++ +KYP Y F +++GY T Sbjct: 170 -AMPLKYTEAELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGTK 228 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRN 206 KH + G IHR++F P++ Sbjct: 229 KHLHGLDTIGICPIHRISFAPVKE 252 >gi|15895039|ref|NP_348388.1| ribonuclease HII [Clostridium acetobutylicum ATCC 824] gi|39932446|sp|Q97I90|RNH2_CLOAB RecName: Full=Ribonuclease HII; Short=RNase HII gi|15024732|gb|AAK79728.1|AE007685_4 Ribonuclease HII [Clostridium acetobutylicum ATCC 824] gi|325509176|gb|ADZ20812.1| ribonuclease HII [Clostridium acetobutylicum EA 2018] Length = 254 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/188 (43%), Positives = 117/188 (62%), Gaps = 9/188 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN-----NIPFGINDSKKISHKKREELYEKITSSAI 80 +AG+DEVGRG LAGP+V AA+IL+ N ++ GINDSKK+S KKR+EL E I A+ Sbjct: 69 IAGVDEVGRGPLAGPIVGAAVILELNVEKDLDLILGINDSKKLSSKKRQELSEIIKEKAL 128 Query: 81 I-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 I+S + IDK I + A+ L+ +P + DG ++ + + + ++KG Sbjct: 129 AWEIASLDNNEIDKKGISWCNNEIFKIAISKLKKVPELVISDGYAV-KGIGIKNHYIVKG 187 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D+ S SIA ASIIAKV RD LM K Y +YGF+S+VGY + H IK+ G + IHR+ Sbjct: 188 DAQSASIACASIIAKVYRDNLMGEYAKSYSEYGFESNVGYGSKDHIDAIKKFGTTPIHRM 247 Query: 200 TFRPLRNL 207 +F L+N+ Sbjct: 248 SF--LKNI 253 >gi|113970962|ref|YP_734755.1| ribonuclease HII [Shewanella sp. MR-4] gi|123029487|sp|Q0HGW9|RNH2_SHESM RecName: Full=Ribonuclease HII; Short=RNase HII gi|113885646|gb|ABI39698.1| RNase HII [Shewanella sp. MR-4] Length = 209 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/187 (45%), Positives = 113/187 (60%), Gaps = 5/187 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDPN G+NDSKK++ K+RE L+++I A+ + Sbjct: 20 VAGVDEVGRGPLVGDVVTAAVILDPNRPIAGLNDSKKLTEKRREALFDEICEKALSYHVG 79 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP----EDLPCQAFAVIKGD 140 A+ ID+ NI AT+ A+ AV L P L+DG P + L + +++KGD Sbjct: 80 RATPSEIDELNILHATMLAMQRAVAGLARTPELVLVDGNRSPAFTHQGLSLTSHSIVKGD 139 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + SI+AASIIAKVTRDR M YP YGF H GYPT H I E G +R + Sbjct: 140 GLIASISAASIIAKVTRDREMDALDAAYPQYGFAKHKGYPTKAHFDAIAEHGVFDQYRKS 199 Query: 201 FRPLRNL 207 F+P++ L Sbjct: 200 FKPVKAL 206 >gi|333029420|ref|ZP_08457481.1| Ribonuclease H [Bacteroides coprosuis DSM 18011] gi|332740017|gb|EGJ70499.1| Ribonuclease H [Bacteroides coprosuis DSM 18011] Length = 199 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 79/181 (43%), Positives = 111/181 (61%), Gaps = 1/181 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL + +NDSK++S KKR EL I + A+ + Sbjct: 13 AGCDEAGRGCLAGPVFAAAVILPSDFENNLLNDSKQLSEKKRYELRVIIENEALACGVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NI A+ A++ A++ L+V P LIDG + ++KGD+ LS Sbjct: 73 VSVEEIDKINILNASFLAMHRAIDCLKVRPEHLLIDGNRFNPYDGIKHTTIVKGDATFLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 IAAASI+AK RD M H KYP+Y ++ + GYPT KH++ I++ G + +HR TFR L+ Sbjct: 133 IAAASILAKTYRDDYMLAQHNKYPNYDWNHNKGYPTKKHREAIEKYGITPLHRHTFRLLK 192 Query: 206 N 206 + Sbjct: 193 D 193 >gi|52841603|ref|YP_095402.1| ribonuclease HII [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81377550|sp|Q5ZVR7|RNH2_LEGPH RecName: Full=Ribonuclease HII; Short=RNase HII gi|46398969|gb|AAS92170.1| RNase H ribonuclease [Legionella pneumophila] gi|46398971|gb|AAS92171.1| RNase H ribonuclease [Legionella pneumophila] gi|52628714|gb|AAU27455.1| ribonuclease HII [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 191 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/185 (44%), Positives = 115/185 (62%), Gaps = 8/185 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD-PNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG LAG VV AA+IL P + G+ DSKK+S K+R L +I A+ + Sbjct: 9 MAGVDEVGRGPLAGAVVTAAVILKKPID---GLTDSKKLSPKQRNLLAIRIKEEALAFAY 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSI 142 A + ID+ NIH ATL A+ AVE L + P + +DG P+ ++PC+A +++GDS+ Sbjct: 66 GRAEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVFVDGAFTPQLNIPCKA--IVQGDSL 123 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKV RD M K YP YGF H GY T H++ + GP IHR ++ Sbjct: 124 IPEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYS 183 Query: 203 PLRNL 207 P+ +L Sbjct: 184 PVADL 188 >gi|269303000|gb|ACZ33100.1| ribonuclease HII [Chlamydophila pneumoniae LPCoLN] Length = 214 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 83/184 (45%), Positives = 117/184 (63%), Gaps = 4/184 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS--SAIISI 83 VAGIDE GRG LAGPVV +A IL + G+NDSKK+S K+R ++ + + I Sbjct: 29 VAGIDEAGRGPLAGPVVASACILPKGKVFPGVNDSKKLSPKQRAQVRDALMQDPEVCFGI 88 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 S + ID+ NI +AT +A+ A+ +L + P L+DG +P D+PC+ +I+GD+ S Sbjct: 89 GVISVERIDQVNILEATKEAMLQAISSLPISPDILLVDGLYLPHDIPCKK--IIQGDAKS 146 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SIAAASI+AK RD LM H+ YP+YGFD H GY T+ H + I+ GPS HR +F P Sbjct: 147 ASIAAASILAKEHRDDLMLQLHRLYPEYGFDRHKGYGTSLHVEAIRRYGPSPCHRKSFSP 206 Query: 204 LRNL 207 ++ + Sbjct: 207 IKQM 210 >gi|313206271|ref|YP_004045448.1| ribonuclease h [Riemerella anatipestifer DSM 15868] gi|312445587|gb|ADQ81942.1| Ribonuclease H [Riemerella anatipestifer DSM 15868] gi|325336287|gb|ADZ12561.1| Ribonuclease HII [Riemerella anatipestifer RA-GD] Length = 194 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 77/177 (43%), Positives = 109/177 (61%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG L GPVV AA+ILD N INDSKK++ K R EL I A+ +I+ Sbjct: 14 AGCDEAGRGCLCGPVVAAAVILDENFEQNLINDSKKLNFKTRNELDLYIKDYALDYAIAE 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 +ID+HNI A++ A++ A++ L + P L+DG +IKGDS LS Sbjct: 74 LPPSFIDEHNILNASIHAMHLALDKLTIRPELILVDGNRFKPYPFTPHECIIKGDSKVLS 133 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD +M H++YP+YG++ + GY T +H++ + + GP+ HR +FR Sbjct: 134 IAAASILAKNYRDHVMIKLHEEYPEYGWNKNFGYATKQHREALNKLGPTIHHRKSFR 190 >gi|254465727|ref|ZP_05079138.1| ribonuclease HII [Rhodobacterales bacterium Y4I] gi|206686635|gb|EDZ47117.1| ribonuclease HII [Rhodobacterales bacterium Y4I] Length = 180 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 84/178 (47%), Positives = 119/178 (66%), Gaps = 4/178 (2%) Query: 32 VGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYI 91 +GRG LAGPV AA++LD IP G+NDSKK+S KKRE L I S A +I+ A+ + I Sbjct: 1 MGRGPLAGPVTAAAVVLDAAAIPDGLNDSKKLSLKKREALEGAILSCAQTAIAHATVEEI 60 Query: 92 DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--PCQAFAVIKGDSISLSIAAA 149 D NI +A+ A+ AV L P LIDG IP+ L PC+A V+KGD+ SLSIAAA Sbjct: 61 DSLNILRASHLAMERAVAALDPAPDYLLIDGNLIPKGLLLPCEA--VVKGDAKSLSIAAA 118 Query: 150 SIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 SIIAK+ RDR+M +++P YG++ + GYP+ +H++ + + G + HR +F+P+ N+ Sbjct: 119 SIIAKLARDRIMVDLAQQFPGYGWEKNAGYPSKQHREALVQLGVTPHHRRSFKPVHNI 176 >gi|54297282|ref|YP_123651.1| ribonuclease HII [Legionella pneumophila str. Paris] gi|81370660|sp|Q5X5J3|RNH2_LEGPA RecName: Full=Ribonuclease HII; Short=RNase HII gi|46398979|gb|AAS92175.1| RNase H ribonuclease [Legionella pneumophila] gi|46398981|gb|AAS92176.1| RNase H ribonuclease [Legionella pneumophila] gi|46398983|gb|AAS92177.1| RNase H ribonuclease [Legionella pneumophila] gi|46398985|gb|AAS92178.1| RNase H ribonuclease [Legionella pneumophila] gi|53751067|emb|CAH12478.1| hypothetical protein lpp1327 [Legionella pneumophila str. Paris] Length = 191 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/185 (44%), Positives = 115/185 (62%), Gaps = 8/185 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG LAG VV AA+IL P G+ DSKK+S K+R L +I A+ + Sbjct: 9 MAGVDEVGRGPLAGAVVTAAVILKK---PIDGLTDSKKLSPKQRNLLAIRIKEEALAFAY 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSI 142 A + ID+ NIH ATL A+ AVE L + P + ++DG P+ ++PC+A +++GDS+ Sbjct: 66 GRAEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVVVDGAFTPQLNIPCKA--IVQGDSL 123 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKV RD M K YP YGF H GY T H++ + GP IHR ++ Sbjct: 124 IPEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYS 183 Query: 203 PLRNL 207 P+ +L Sbjct: 184 PVADL 188 >gi|114048186|ref|YP_738736.1| ribonuclease HII [Shewanella sp. MR-7] gi|123131228|sp|Q0HT76|RNH2_SHESR RecName: Full=Ribonuclease HII; Short=RNase HII gi|113889628|gb|ABI43679.1| RNase HII [Shewanella sp. MR-7] Length = 209 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 87/187 (46%), Positives = 114/187 (60%), Gaps = 5/187 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDPN G+NDSKK++ K+RE L+++I A+ + Sbjct: 20 VAGVDEVGRGPLVGDVVTAAVILDPNRPIAGLNDSKKLTEKRREALFDEICEKALSFHVG 79 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAF---AVIKGD 140 AS ID+ NI AT+ A+ AV L + P L+DG P + QA +++KGD Sbjct: 80 RASPAEIDELNILHATMLAMQRAVAGLSLTPELVLVDGNRSPAFNHAGQALTSHSIVKGD 139 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + SI+AASIIAKVTRDR M YP YGF H GYPT H I E G +R + Sbjct: 140 GLIASISAASIIAKVTRDREMDALDAAYPQYGFAKHKGYPTKAHFDAIAEHGVFDQYRKS 199 Query: 201 FRPLRNL 207 F+P++ L Sbjct: 200 FKPVKAL 206 >gi|15618043|ref|NP_224327.1| ribonuclease HII [Chlamydophila pneumoniae CWL029] gi|15835655|ref|NP_300179.1| ribonuclease HII [Chlamydophila pneumoniae J138] gi|16752925|ref|NP_445196.1| ribonuclease HII [Chlamydophila pneumoniae AR39] gi|33241455|ref|NP_876396.1| ribonuclease HII [Chlamydophila pneumoniae TW-183] gi|7227930|sp|Q9Z962|RNH2_CHLPN RecName: Full=Ribonuclease HII; Short=RNase HII gi|4376382|gb|AAD18272.1| Ribonuclease HII [Chlamydophila pneumoniae CWL029] gi|8163472|gb|AAF73691.1| ribonuclease HII [Chlamydophila pneumoniae AR39] gi|8978493|dbj|BAA98330.1| ribonuclease HII [Chlamydophila pneumoniae J138] gi|33235963|gb|AAP98053.1| ribonuclease H II [Chlamydophila pneumoniae TW-183] Length = 214 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 83/184 (45%), Positives = 117/184 (63%), Gaps = 4/184 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS--SAIISI 83 VAGIDE GRG LAGPVV +A IL + G+NDSKK+S K+R ++ + + I Sbjct: 29 VAGIDEAGRGPLAGPVVASACILPKGKVFPGVNDSKKLSPKQRAQVRDALMQDPEVCFGI 88 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 S + ID+ NI +AT +A+ A+ +L + P L+DG +P D+PC+ +I+GD+ S Sbjct: 89 GVISVERIDQVNILEATKEAMLQAISSLPISPDILLVDGLYLPHDIPCKK--IIQGDAKS 146 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SIAAASI+AK RD LM H+ YP+YGFD H GY T+ H + I+ GPS HR +F P Sbjct: 147 ASIAAASILAKEHRDDLMLQLHRLYPEYGFDRHKGYGTSLHVEAIRRYGPSPCHRKSFSP 206 Query: 204 LRNL 207 ++ + Sbjct: 207 IKQM 210 >gi|203287517|ref|YP_002222532.1| ribonuclease H [Borrelia recurrentis A1] gi|238690580|sp|B5RQM7|RNH2_BORRA RecName: Full=Ribonuclease HII; Short=RNase HII gi|201084737|gb|ACH94311.1| ribonuclease H [Borrelia recurrentis A1] Length = 181 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 79/178 (44%), Positives = 108/178 (60%), Gaps = 1/178 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + GIDEVGRG + GPV+ AA+I N ++DSKK++ KRE L I +A + + Sbjct: 2 ICGIDEVGRGCIFGPVLSAAVIFKTKPNFLNELDDSKKLTKTKREYLSSLILENAYYAFA 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S++ IDK NIH A+L A+ A + L + L+DG+ IP+ Q A+IKGDS+ Sbjct: 62 DISNEIIDKINIHNASLLAMQIAYQKLNIECNLVLVDGKFIPKIQAKQIRAIIKGDSMID 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I AASIIAKV RD+LM K YP YG + GYPT +H+ IK+ G +HR +FR Sbjct: 122 EIKAASIIAKVQRDKLMVEYDKIYPLYGLKKNKGYPTKEHKDAIKKHGILSLHRKSFR 179 >gi|255319657|ref|ZP_05360866.1| ribonuclease HII [Acinetobacter radioresistens SK82] gi|262378546|ref|ZP_06071703.1| ribonuclease HII [Acinetobacter radioresistens SH164] gi|255303274|gb|EET82482.1| ribonuclease HII [Acinetobacter radioresistens SK82] gi|262299831|gb|EEY87743.1| ribonuclease HII [Acinetobacter radioresistens SH164] Length = 191 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/183 (44%), Positives = 113/183 (61%), Gaps = 1/183 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DE GRG L G VV AA+ILDP G+NDSKK++ KKRE+L+ +I A+ I+ Sbjct: 3 IAGVDEAGRGPLVGAVVAAAVILDPARPIEGLNDSKKLTEKKREKLFVEIQEKALAWYIA 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID+ NI +A+L A+ AVE L + P L+DG P L AV+ GD++ Sbjct: 63 EASATEIDEINILQASLLAMRRAVEGLSIQPDKVLVDGNKEPAGLQMSCEAVVGGDALYQ 122 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RDR M + ++YP YGF H GYPT H + I G HR ++ P+ Sbjct: 123 EISAASILAKVARDRQMVLLDQRYPHYGFAKHKGYPTKAHFEAIGIHGVIDEHRRSYAPV 182 Query: 205 RNL 207 + + Sbjct: 183 KKV 185 >gi|163791099|ref|ZP_02185519.1| ribonuclease HII [Carnobacterium sp. AT7] gi|159873655|gb|EDP67739.1| ribonuclease HII [Carnobacterium sp. AT7] Length = 257 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 93/197 (47%), Positives = 127/197 (64%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++E E+ +AGIDEVGRG LAGPVV AA++L + GINDSK++S KRE L Sbjct: 61 LQIERYFWEQGTQYIAGIDEVGRGPLAGPVVAAAVVLPKDFDVLGINDSKQLSSAKREAL 120 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +E+I +A+ I I H IDK NI++AT A+ A++ L V P LID +P +P Sbjct: 121 FEQIQEAAVAIGIGVKDHHIIDKVNIYEATKLAMIEAIQQLPVQPEQLLIDAMHLPVSIP 180 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++F IKGD+ S+SIAAASIIAKVTRDR+M YP YGF + GY T H + +++ Sbjct: 181 QESF--IKGDAKSISIAAASIIAKVTRDRMMADYDDLYPGYGFAKNAGYGTKVHLEGLEK 238 Query: 191 KGPSCIHRLTFRPLRNL 207 +G IHR TF P++N+ Sbjct: 239 QGACPIHRKTFAPVKNV 255 >gi|242373537|ref|ZP_04819111.1| ribonuclease HII [Staphylococcus epidermidis M23864:W1] gi|242348900|gb|EES40502.1| ribonuclease HII [Staphylococcus epidermidis M23864:W1] Length = 256 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 77/183 (42%), Positives = 112/183 (61%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG LAGPVV A+IL+ ++ G+NDSKK+ K+R L + + + + Sbjct: 74 ICGIDEVGRGPLAGPVVACAVILNKDHHYLGLNDSKKVPAKQRVALNNDLKAGVLSYAYG 133 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID+ NI++AT A+ A+ L P LID + D+P ++IKGD+ S+ Sbjct: 134 IASSEEIDELNIYRATQVAMQRAIAQLDEQPTHLLIDAMKLDNDIP--QTSIIKGDAKSV 191 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASI+AK RD M+ +PDYGF+ +VGY T +H + I G HR +F P+ Sbjct: 192 SIAAASIMAKEYRDDYMKALANHFPDYGFEKNVGYGTKQHLEAIDTYGVINEHRKSFEPI 251 Query: 205 RNL 207 ++L Sbjct: 252 KSL 254 >gi|307152014|ref|YP_003887398.1| Ribonuclease H [Cyanothece sp. PCC 7822] gi|306982242|gb|ADN14123.1| Ribonuclease H [Cyanothece sp. PCC 7822] Length = 215 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/210 (40%), Positives = 129/210 (61%), Gaps = 7/210 (3%) Query: 7 PERPHFELEAMVREKNMWP-VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSK 61 P P F++ + K+ +AG+DEVGRGAL GPV A+I+ + +P G+ DSK Sbjct: 4 PILPTFDISLLPEVKSQETLIAGVDEVGRGALFGPVAAGAVIIPVSALPQLTALGVKDSK 63 Query: 62 KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 ++S KKR EL +I + A+ +S A+ ID+ NI +A+L A+Y AV L+V L+ Sbjct: 64 QLSPKKRSELAAQIKAMALDFHVSFATVMDIDRINILQASLLAMYRAVAKLKVEAAVCLV 123 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG+ +L + +++GD S IAAASI+AKV RD+L+ +KYP Y ++ GY Sbjct: 124 DGKQPIPNLAIRQENIVRGDERSPVIAAASILAKVWRDQLIVRLARKYPHYDLIANKGYG 183 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPL-RNLSV 209 T +H++ + + GPS HRL+FRP ++LS+ Sbjct: 184 TIRHREALLKYGPSPQHRLSFRPCQKSLSI 213 >gi|88607606|ref|YP_505581.1| ribonuclease HII [Anaplasma phagocytophilum HZ] gi|123494580|sp|Q2GJ70|RNH2_ANAPZ RecName: Full=Ribonuclease HII; Short=RNase HII gi|88598669|gb|ABD44139.1| ribonuclease HII [Anaplasma phagocytophilum HZ] Length = 210 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/200 (40%), Positives = 121/200 (60%), Gaps = 6/200 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKK 67 P+F E + V G+DEVG G++AGPVV AA+ + N+ I DSK ++ KK Sbjct: 2 PNFSYEDSFSHGSNAIVVGVDEVGYGSIAGPVVAAAVYIPDRNVECIPNIKDSKLLTPKK 61 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-ALIDG-RSI 125 R+ LY+++ S + AS I++HNI A+ A+ A+ENL + L+DG R + Sbjct: 62 RDALYKELLSHTVCGTGLASIDEIEEHNILVASHMAMRRALENLNLQRIDLVLVDGSREL 121 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P ++ +I GD +S+SIAAASI+AKVTRD +MR H +YP+Y ++ + GY TA H Sbjct: 122 KSQWPSKS--IINGDELSISIAAASIVAKVTRDNMMRELHDQYPEYHWNKNCGYGTAAHI 179 Query: 186 QVIKEKGPSCIHRLTFRPLR 205 +K+ G + +HR TF P++ Sbjct: 180 LALKQHGATPLHRKTFAPVK 199 >gi|297584021|ref|YP_003699801.1| ribonuclease H [Bacillus selenitireducens MLS10] gi|297142478|gb|ADH99235.1| Ribonuclease H [Bacillus selenitireducens MLS10] Length = 258 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/186 (44%), Positives = 115/186 (61%), Gaps = 9/186 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84 +AG+DEVGRG LAGPV A +IL + G+ DSKK+S KR +I AI + Sbjct: 71 IAGVDEVGRGPLAGPVTAACVILPESPDLKGLTDSKKLSEAKRHFYAAEIQKVAIAAETG 130 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA----LIDGRSIPEDLPCQAFAVIKGD 140 AS + ID+ NI++A+ A+ AV +Q ++A LID ++P DLP ++ +IKGD Sbjct: 131 EASPEEIDRLNIYEASKLAMRRAVAAVQ--QKTAIDFLLIDAMTLPIDLPQES--LIKGD 186 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + SLSIAAAS+IAKV RD M+ + +P+YG SH+GY T +H + E GP HR + Sbjct: 187 ARSLSIAAASVIAKVERDNQMKELDRAFPEYGLASHMGYGTREHLAALDEHGPQFFHRKS 246 Query: 201 FRPLRN 206 F P+R Sbjct: 247 FSPVRE 252 >gi|328794509|ref|XP_003252082.1| PREDICTED: ribonuclease HII-like, partial [Apis mellifera] Length = 169 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 81/167 (48%), Positives = 101/167 (60%), Gaps = 2/167 (1%) Query: 42 VVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKAT 100 V AA+ILDPNN G+ DSKK+S KKRE L+E I A+ +I+ AS ID+ NI AT Sbjct: 1 VTAAVILDPNNPIEGLADSKKLSEKKREYLFEVIKEKALAWNIARASVSEIDQLNILHAT 60 Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160 + A+ AV L + P L+DG P D A AV+KGDS+ I AASI+AKVTRDR Sbjct: 61 MLAMQRAVAGLSIKPNLVLVDGNRAP-DFGIAAQAVVKGDSLVQEIGAASILAKVTRDRE 119 Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 M K YP YG H GYPT H I E G + I+R +F P++ L Sbjct: 120 MAELDKIYPQYGLSKHKGYPTQAHLAAIIEHGVNDIYRKSFAPVKRL 166 >gi|239948099|ref|ZP_04699852.1| ribonuclease HII [Rickettsia endosymbiont of Ixodes scapularis] gi|239922375|gb|EER22399.1| ribonuclease HII [Rickettsia endosymbiont of Ixodes scapularis] Length = 193 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 89/177 (50%), Positives = 113/177 (63%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 VAGIDE GRG LAGPVV +A+I+D NI GI DSKK+S KKRE LYE+ITS+ + S + Sbjct: 17 VAGIDEAGRGPLAGPVVASAVIIDNANIITGIKDSKKLSKKKRELLYEQITSNYVWSAAI 76 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 SH ID+ NI +AT A A NL P L+DG D + +++ GD++SLS Sbjct: 77 ISHTEIDEINILEATKKACSIAAANLTTKPEIVLVDGNMQFNDE--RFVSIVNGDNLSLS 134 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASIIAKVTRDRLM ++P Y + + GY T +H + I G S HR +FR Sbjct: 135 IAAASIIAKVTRDRLMLDLSAEFPQYLWHKNSGYGTKEHIEAINTHGLSPYHRRSFR 191 >gi|257867805|ref|ZP_05647458.1| ribonuclease HII [Enterococcus casseliflavus EC30] gi|257874132|ref|ZP_05653785.1| ribonuclease HII [Enterococcus casseliflavus EC10] gi|257876697|ref|ZP_05656350.1| ribonuclease HII [Enterococcus casseliflavus EC20] gi|257801888|gb|EEV30791.1| ribonuclease HII [Enterococcus casseliflavus EC30] gi|257808296|gb|EEV37118.1| ribonuclease HII [Enterococcus casseliflavus EC10] gi|257810863|gb|EEV39683.1| ribonuclease HII [Enterococcus casseliflavus EC20] Length = 254 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 93/200 (46%), Positives = 128/200 (64%), Gaps = 5/200 (2%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E FE EA ++ +AG+DEVGRG LAGPVV AA+IL G+NDSK++S KK Sbjct: 57 EMMRFENEAF--QQGARFIAGLDEVGRGPLAGPVVSAAVILPKECQILGLNDSKQLSAKK 114 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 REEL+ +I + A+ + I S + ID+ NI++A+ A+ A+ +L V P LID +I Sbjct: 115 REELFIEIQNKAVAVGIGVVSPEEIDRINIYQASRLAMKEALIDLAVKPEYLLIDAMTID 174 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 ++P Q+ +IKGD+ S+SIAAASIIAKV RD LM+ H+ YP YGFD + GY T H + Sbjct: 175 TEIPQQS--LIKGDARSISIAAASIIAKVYRDNLMKDFHEVYPFYGFDQNAGYGTKVHLE 232 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 + G IHR TF P++ Sbjct: 233 GLAAHGICPIHRKTFAPVKQ 252 >gi|117921242|ref|YP_870434.1| ribonuclease HII [Shewanella sp. ANA-3] gi|166226654|sp|A0KZ09|RNH2_SHESA RecName: Full=Ribonuclease HII; Short=RNase HII gi|117613574|gb|ABK49028.1| RNase HII [Shewanella sp. ANA-3] Length = 209 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 87/187 (46%), Positives = 113/187 (60%), Gaps = 5/187 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDPN G+NDSKK+S K+RE L+++I A+ + Sbjct: 20 VAGVDEVGRGPLVGDVVTAAVILDPNRPIAGLNDSKKLSEKRREALFDEICEKALSYHVG 79 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP----EDLPCQAFAVIKGD 140 AS ID+ NI AT+ A+ AV L P L+DG P + L + +++KGD Sbjct: 80 RASPLEIDELNILHATMLAMQRAVAGLARAPELVLVDGNRSPAFTHQGLTLISHSIVKGD 139 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + SI+AASIIAKVTRDR M YP YGF H GYPT H I E G +R + Sbjct: 140 GLIASISAASIIAKVTRDREMDALDAAYPQYGFAKHKGYPTKAHFDAIAEHGVFDQYRKS 199 Query: 201 FRPLRNL 207 F+P++ L Sbjct: 200 FKPVKAL 206 >gi|83319843|ref|YP_424513.1| ribonuclease HII, putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|97182957|sp|Q2SRV0|RNH2_MYCCT RecName: Full=Ribonuclease HII; Short=RNase HII gi|83283729|gb|ABC01661.1| ribonuclease HII, putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 207 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 77/202 (38%), Positives = 122/202 (60%), Gaps = 2/202 (0%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 R F+ + + + N+ ++G DE GRG LAGP+VVA++IL P+ I DSKK++ K Sbjct: 3 NRKSFD-DQIKLDHNITYLSGSDEAGRGCLAGPLVVASVILKPDYFNPLIKDSKKLNPKT 61 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R+ L+++I + + I S + +D+ N +A+L + NL++ P ALIDG Sbjct: 62 RQVLFDEIIKNCLDYQIMIISSKQVDELNPLQASLLGFKTTISNLKITPDLALIDGNQNI 121 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + ++IKGD S SIA +SI+AKVTRD+++ + YP+YGF SH GY T KH Sbjct: 122 NLENIKTLSIIKGDDNSFSIACSSILAKVTRDKILDQYDQIYPNYGFKSHKGYCTKKHLL 181 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 I++ G IHR +++P++ +S Sbjct: 182 AIQKYGVLDIHRKSYKPIKKIS 203 >gi|319790514|ref|YP_004152147.1| Ribonuclease H [Thermovibrio ammonificans HB-1] gi|317115016|gb|ADU97506.1| Ribonuclease H [Thermovibrio ammonificans HB-1] Length = 242 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/191 (41%), Positives = 113/191 (59%), Gaps = 7/191 (3%) Query: 20 EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 EK++W VAG+DE GRG LAGPVV AA++ P+ PF DSKK++ ++RE L+ + Sbjct: 10 EKSLWSKGYRFVAGVDEAGRGPLAGPVVAAAVVFSPHVKPFLFRDSKKLTKRERERLFRE 69 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I SA + + A ID+ NI++ATL A A+E L + P + D IP+ + Sbjct: 70 ILKSAYAVGVGFADSTEIDELNIYRATLLAAERAIEELPLKPDYLITDYLKIPK-FAGRL 128 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 A+ KGD S S A AS++AKV RD +M H +P+YGF+ H GYPT H ++ G Sbjct: 129 IAIPKGDERSFSCACASVVAKVVRDFIMEELHTLFPNYGFNKHKGYPTKTHYGAVRSFGL 188 Query: 194 SCIHRLTFRPL 204 S +HR +F L Sbjct: 189 SPVHRRSFGKL 199 >gi|229586446|ref|YP_002844947.1| ribonuclease HII [Rickettsia africae ESF-5] gi|259494072|sp|C3PMP4|RNH2_RICAE RecName: Full=Ribonuclease HII; Short=RNase HII gi|228021496|gb|ACP53204.1| Ribonuclease HII [Rickettsia africae ESF-5] Length = 193 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 89/177 (50%), Positives = 115/177 (64%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 VAGIDE GRG LAGPVV +A+I+D NI GI DSKK+S KKRE LYE+ITS+ + + + Sbjct: 17 VAGIDEAGRGPLAGPVVASAVIVDNANIITGIKDSKKLSKKKRELLYEQITSNYVWATAI 76 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 SH ID NI +AT A AV NL + P L+DG +D + ++I GD++SLS Sbjct: 77 ISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKDE--RFVSIINGDNLSLS 134 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AKVTRDRLM ++P Y + + GY T +H + I G S HR +FR Sbjct: 135 IAAASIVAKVTRDRLMLDLSAEFPQYLWHKNSGYGTKEHIEAINIYGLSPYHRRSFR 191 >gi|229824250|ref|ZP_04450319.1| hypothetical protein GCWU000282_01554 [Catonella morbi ATCC 51271] gi|229786604|gb|EEP22718.1| hypothetical protein GCWU000282_01554 [Catonella morbi ATCC 51271] Length = 262 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/196 (42%), Positives = 122/196 (62%), Gaps = 5/196 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREELY 72 E E +AG+DEVGRG LAGPVVVAA++L D ++ G+ DSK++SH KR E Sbjct: 63 EMAAYEAGYQVIAGLDEVGRGPLAGPVVVAAVVLPRDCQHLLVGVTDSKQLSHAKRLEFA 122 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ + I + ID+ NI++AT + AVE L+V P L+D +I DLP Sbjct: 123 RQIREVALDLKIVAIPPAIIDRENIYQATRQGMKAAVEALRVKPDYLLLDAITIDSDLPQ 182 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++ +KGD SLSIAAASI+AKV RD LM + YP++GF+ ++GY T +H + Sbjct: 183 ESL--VKGDQRSLSIAAASIVAKVYRDELMVQYSQTYPEFGFERNMGYGTKEHLVALDRV 240 Query: 192 GPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 241 GYTPIHRRSFEPVKSM 256 >gi|42560965|ref|NP_975416.1| ribonuclease H II [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|81829391|sp|Q6MTH8|RNH2_MYCMS RecName: Full=Ribonuclease HII; Short=RNase HII gi|42492462|emb|CAE77058.1| ribonuclease H II [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321294|gb|ADK69937.1| ribonuclease HII [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 207 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 76/188 (40%), Positives = 115/188 (61%), Gaps = 1/188 (0%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 N+ ++G DE GRG LAGP+VVA++IL P+ I DSKK++ K R+ LY++I + + Sbjct: 16 NITYLSGSDEAGRGCLAGPLVVASVILKPDYFNPLIKDSKKLNPKTRQVLYDEIIKNCLD 75 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I S + +D+ N +A+L + NL++ P ALIDG E + +IKGD Sbjct: 76 YQIIIISSKQVDELNPLQASLLGFKTTINNLKITPDLALIDGNQNIELTNIKTLQIIKGD 135 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S SIA +SI+AKVTRD+++ + YP+Y F SH GY T KH I++ G IHR + Sbjct: 136 DKSFSIACSSILAKVTRDKILDEYDQIYPNYDFKSHKGYCTKKHLLAIQKYGILDIHRKS 195 Query: 201 FRPLRNLS 208 ++P++ +S Sbjct: 196 YKPIKKIS 203 >gi|15892187|ref|NP_359901.1| ribonuclease HII [Rickettsia conorii str. Malish 7] gi|20139552|sp|Q92J05|RNH2_RICCN RecName: Full=Ribonuclease HII; Short=RNase HII gi|15619319|gb|AAL02802.1| ribonuclease HII [Rickettsia conorii str. Malish 7] Length = 193 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 89/177 (50%), Positives = 115/177 (64%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 VAGIDE GRG LAGPVV +A+I+D NI GI DSKK+S KKRE LYE+ITS+ + + + Sbjct: 17 VAGIDEAGRGPLAGPVVASAVIVDNANIITGIKDSKKLSKKKRELLYEQITSNYVWATAI 76 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 SH ID NI +AT A AV NL + P L+DG +D + ++I GD++SLS Sbjct: 77 ISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKDE--RFVSIINGDNLSLS 134 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AKVTRDRLM ++P Y + + GY T +H + I G S HR +FR Sbjct: 135 IAAASIVAKVTRDRLMLDLSAEFPQYLWHKNSGYGTKEHIEAINIHGLSPYHRRSFR 191 >gi|329942999|ref|ZP_08291773.1| ribonuclease HII family protein [Chlamydophila psittaci Cal10] gi|332287581|ref|YP_004422482.1| ribonuclease HII [Chlamydophila psittaci 6BC] gi|313848155|emb|CBY17156.1| ribonuclease HII [Chlamydophila psittaci RD1] gi|325506940|gb|ADZ18578.1| ribonuclease HII [Chlamydophila psittaci 6BC] gi|328814546|gb|EGF84536.1| ribonuclease HII family protein [Chlamydophila psittaci Cal10] gi|328914832|gb|AEB55665.1| ribonuclease HII [Chlamydophila psittaci 6BC] Length = 212 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 88/196 (44%), Positives = 121/196 (61%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E V + +AGIDEVGRG LAGPVV AA IL + G+NDSKK++ K+R ++ + Sbjct: 18 FEEEVFREGFSLIAGIDEVGRGPLAGPVVAAACILPRGKVFAGVNDSKKLTPKERGKIRD 77 Query: 74 KITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + + + S + ID+ NI +AT +A+ A+ NL + P L+DG +P +PC Sbjct: 78 ILVNDPEVYYGLGVVSVERIDEINILEATKEAMAVAIANLPIHPDFLLVDGLHLPHKIPC 137 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +I+GDS S SIAAASIIAK RD LMR H+ YP+YGFD H GY TA H +K Sbjct: 138 KK--IIQGDSKSASIAAASIIAKEYRDDLMRELHQLYPNYGFDKHKGYGTAAHLAALKAF 195 Query: 192 GPSCIHRLTFRPLRNL 207 GP HR +F P+R + Sbjct: 196 GPCDCHRKSFAPVRQV 211 >gi|78189946|ref|YP_380284.1| ribonuclease HII [Chlorobium chlorochromatii CaD3] gi|97182370|sp|Q3AP34|RNH2_CHLCH RecName: Full=Ribonuclease HII; Short=RNase HII gi|78172145|gb|ABB29241.1| RNase HII [Chlorobium chlorochromatii CaD3] Length = 206 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 86/199 (43%), Positives = 119/199 (59%), Gaps = 11/199 (5%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGI-NDSKKISHKKREE 70 E+ +W + GIDEVGRG LAGPVV AA++ P + NDSKK+S K+RE Sbjct: 6 EEPLWQHYEFICGIDEVGRGPLAGPVVAAAVVFPRWFQPTEALLTLLNDSKKLSAKERES 65 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L I + A+ +++ H ID+ NI +AT+ A+ +AV+ L +IP L+DG DL Sbjct: 66 LVPAIKAQALHWALAEVQHNVIDEVNILQATMLAMNNAVKALPIIPSLLLVDGNRFTTDL 125 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++KGDS SIAAAS++AKV RD LM + YP YGF+ H GYPT+ H + I+ Sbjct: 126 AIPYKTIVKGDSHVFSIAAASVLAKVHRDALMCVYATHYPHYGFERHAGYPTSAHIEAIR 185 Query: 190 EKGPSCIHRLTFRPLRNLS 208 + G IHR +F+ LR L Sbjct: 186 QHGRCPIHRQSFK-LRQLG 203 >gi|253999106|ref|YP_003051169.1| Ribonuclease H [Methylovorus sp. SIP3-4] gi|253985785|gb|ACT50642.1| Ribonuclease H [Methylovorus sp. SIP3-4] Length = 188 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 78/183 (42%), Positives = 114/183 (62%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 + G+DE GRG LAG V AA+IL+P G+ DSKK+S KKR+ L +I A+ +I+ Sbjct: 6 ICGVDEAGRGPLAGAVYAAAVILNPARPIPGLADSKKLSEKKRDALTLEIKQHALAWAIA 65 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 ++ + ID NI +A+L A+ AVE L + P L+DG PE + A A++ GDS Sbjct: 66 HSTVEEIDSINILQASLLAMRRAVEQLGIQPHKLLVDGLHCPE-VSMVAEAIVDGDSKVE 124 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AK RD+ + ++YP YGF H GYPTA H ++ E G S +HR ++ P+ Sbjct: 125 AISAASILAKTARDKELYALDQQYPHYGFAKHKGYPTAFHMAMLIEHGVSPVHRRSYAPV 184 Query: 205 RNL 207 + L Sbjct: 185 KKL 187 >gi|240124405|ref|ZP_04737361.1| ribonuclease HII [Neisseria gonorrhoeae PID332] Length = 194 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/184 (43%), Positives = 109/184 (59%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83 AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L E I A+ + Sbjct: 5 TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKEQAVAWHV 63 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 ++++ + I NI AT+ A+ AV L P IDG IPE L A AV+KGDS Sbjct: 64 AASTPEEIASLNILHATMLAMKRAVYGLAARPEKIFIDGNRIPEHLGIPAEAVVKGDSKI 123 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M ++ P YGFD H GY T +H + +K+ G HR F P Sbjct: 124 IEISAASVLAKTARDAEMYALAQRRPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183 Query: 204 LRNL 207 +RNL Sbjct: 184 VRNL 187 >gi|59802108|ref|YP_208820.1| hypothetical protein NGO1789 [Neisseria gonorrhoeae FA 1090] gi|239997979|ref|ZP_04717903.1| ribonuclease HII [Neisseria gonorrhoeae 35/02] gi|240015043|ref|ZP_04721956.1| ribonuclease HII [Neisseria gonorrhoeae DGI18] gi|240017491|ref|ZP_04724031.1| ribonuclease HII [Neisseria gonorrhoeae FA6140] gi|240081632|ref|ZP_04726175.1| ribonuclease HII [Neisseria gonorrhoeae FA19] gi|240113913|ref|ZP_04728403.1| ribonuclease HII [Neisseria gonorrhoeae MS11] gi|240116645|ref|ZP_04730707.1| ribonuclease HII [Neisseria gonorrhoeae PID18] gi|240118868|ref|ZP_04732930.1| ribonuclease HII [Neisseria gonorrhoeae PID1] gi|240122111|ref|ZP_04735073.1| ribonuclease HII [Neisseria gonorrhoeae PID24-1] gi|240124723|ref|ZP_04737609.1| ribonuclease HII [Neisseria gonorrhoeae SK-92-679] gi|240129082|ref|ZP_04741743.1| ribonuclease HII [Neisseria gonorrhoeae SK-93-1035] gi|260439594|ref|ZP_05793410.1| ribonuclease HII [Neisseria gonorrhoeae DGI2] gi|73917827|sp|Q5F5X9|RNH2_NEIG1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|59719003|gb|AAW90408.1| putative ribonuclease HII [Neisseria gonorrhoeae FA 1090] Length = 194 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/184 (43%), Positives = 109/184 (59%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83 AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L E I A+ + Sbjct: 5 TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKEQAVAWHV 63 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 ++++ + I NI AT+ A+ AV L P IDG IPE L A AV+KGDS Sbjct: 64 AASTPEEIASLNILHATMLAMKRAVYGLAARPEKIFIDGNRIPEHLGIPAEAVVKGDSKI 123 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M ++ P YGFD H GY T +H + +K+ G HR F P Sbjct: 124 IEISAASVLAKTARDAEMYALAQRRPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183 Query: 204 LRNL 207 +RNL Sbjct: 184 VRNL 187 >gi|293398148|ref|ZP_06642353.1| ribonuclease HII [Neisseria gonorrhoeae F62] gi|291611411|gb|EFF40481.1| ribonuclease HII [Neisseria gonorrhoeae F62] Length = 212 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 80/184 (43%), Positives = 109/184 (59%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83 AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L E I A+ + Sbjct: 23 TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKEQAVAWHV 81 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 ++++ + I NI AT+ A+ AV L P IDG IPE L A AV+KGDS Sbjct: 82 AASTPEEIASLNILHATMLAMKRAVYGLAARPEKIFIDGNRIPEHLGIPAEAVVKGDSKI 141 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M ++ P YGFD H GY T +H + +K+ G HR F P Sbjct: 142 IEISAASVLAKTARDAEMYALAQRRPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 201 Query: 204 LRNL 207 +RNL Sbjct: 202 VRNL 205 >gi|194099971|ref|YP_002003110.1| ribonuclease HII [Neisseria gonorrhoeae NCCP11945] gi|254494667|ref|ZP_05107838.1| ribonuclease HII [Neisseria gonorrhoeae 1291] gi|268593829|ref|ZP_06127996.1| ribonuclease HII [Neisseria gonorrhoeae 35/02] gi|268597728|ref|ZP_06131895.1| ribonuclease HII [Neisseria gonorrhoeae FA19] gi|268599975|ref|ZP_06134142.1| ribonuclease HII [Neisseria gonorrhoeae MS11] gi|268602313|ref|ZP_06136480.1| ribonuclease HII [Neisseria gonorrhoeae PID18] gi|268604575|ref|ZP_06138742.1| ribonuclease HII [Neisseria gonorrhoeae PID1] gi|268683300|ref|ZP_06150162.1| ribonuclease HII [Neisseria gonorrhoeae SK-92-679] gi|268687461|ref|ZP_06154323.1| ribonuclease HII [Neisseria gonorrhoeae SK-93-1035] gi|291042833|ref|ZP_06568574.1| ribonuclease HII [Neisseria gonorrhoeae DGI2] gi|193935261|gb|ACF31085.1| RnhB [Neisseria gonorrhoeae NCCP11945] gi|226513707|gb|EEH63052.1| ribonuclease HII [Neisseria gonorrhoeae 1291] gi|268547218|gb|EEZ42636.1| ribonuclease HII [Neisseria gonorrhoeae 35/02] gi|268551516|gb|EEZ46535.1| ribonuclease HII [Neisseria gonorrhoeae FA19] gi|268584106|gb|EEZ48782.1| ribonuclease HII [Neisseria gonorrhoeae MS11] gi|268586444|gb|EEZ51120.1| ribonuclease HII [Neisseria gonorrhoeae PID18] gi|268588706|gb|EEZ53382.1| ribonuclease HII [Neisseria gonorrhoeae PID1] gi|268623584|gb|EEZ55984.1| ribonuclease HII [Neisseria gonorrhoeae SK-92-679] gi|268627745|gb|EEZ60145.1| ribonuclease HII [Neisseria gonorrhoeae SK-93-1035] gi|291013267|gb|EFE05233.1| ribonuclease HII [Neisseria gonorrhoeae DGI2] gi|317165422|gb|ADV08963.1| ribonuclease HII [Neisseria gonorrhoeae TCDC-NG08107] Length = 212 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 80/184 (43%), Positives = 109/184 (59%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83 AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L E I A+ + Sbjct: 23 TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKEQAVAWHV 81 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 ++++ + I NI AT+ A+ AV L P IDG IPE L A AV+KGDS Sbjct: 82 AASTPEEIASLNILHATMLAMKRAVYGLAARPEKIFIDGNRIPEHLGIPAEAVVKGDSKI 141 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M ++ P YGFD H GY T +H + +K+ G HR F P Sbjct: 142 IEISAASVLAKTARDAEMYALAQRRPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 201 Query: 204 LRNL 207 +RNL Sbjct: 202 VRNL 205 >gi|268683032|ref|ZP_06149894.1| ribonuclease HII [Neisseria gonorrhoeae PID332] gi|268623316|gb|EEZ55716.1| ribonuclease HII [Neisseria gonorrhoeae PID332] Length = 212 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 80/184 (43%), Positives = 109/184 (59%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83 AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L E I A+ + Sbjct: 23 TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKEQAVAWHV 81 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 ++++ + I NI AT+ A+ AV L P IDG IPE L A AV+KGDS Sbjct: 82 AASTPEEIASLNILHATMLAMKRAVYGLAARPEKIFIDGNRIPEHLGIPAEAVVKGDSKI 141 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M ++ P YGFD H GY T +H + +K+ G HR F P Sbjct: 142 IEISAASVLAKTARDAEMYALAQRRPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 201 Query: 204 LRNL 207 +RNL Sbjct: 202 VRNL 205 >gi|166364262|ref|YP_001656535.1| ribonuclease HII [Microcystis aeruginosa NIES-843] gi|189043628|sp|B0JV09|RNH2_MICAN RecName: Full=Ribonuclease HII; Short=RNase HII gi|166086635|dbj|BAG01343.1| ribonuclease HII [Microcystis aeruginosa NIES-843] Length = 208 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 79/184 (42%), Positives = 112/184 (60%), Gaps = 4/184 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 +AG+DEVGRGAL GPVV A ++ P+ G+ DSK++S +KR++L +I + Sbjct: 7 IAGVDEVGRGALFGPVVAAVVVTVPSGFARLWELGVKDSKQLSPQKRQKLSRQIQRDFVC 66 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I A+ + ID+ NI A+L A+ A+ L + P +DG+ I +DL AVI+GD Sbjct: 67 RIGYATVKEIDRLNIFHASLLAMSRAIGKLPLSPSLCWVDGKHIIKDLSIPQKAVIQGDQ 126 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 S IAAASI+AKV RD L+ H++YPDYG H GY TA+H + I G + HRL+F Sbjct: 127 QSPVIAAASIVAKVWRDDLITRWHRRYPDYGLARHKGYGTAQHLEAIGNYGLTSQHRLSF 186 Query: 202 RPLR 205 P + Sbjct: 187 SPCQ 190 >gi|299067473|emb|CBJ38672.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum CMR15] Length = 236 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 78/185 (42%), Positives = 113/185 (61%), Gaps = 11/185 (5%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISSA 86 G+DE GRG LAGPV A++L+P G+ DSK ++ KKRE LY++I A+ ++ A Sbjct: 31 GVDEAGRGPLAGPVTAGAVVLNPRKPIQGLADSKVLTAKKREALYDEIVEKALAWHVAEA 90 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLPCQAFAV---IKGD 140 + + ID+ NI AT+ A+ AV+ + V+P +DG P+ AFAV +KGD Sbjct: 91 TVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVDGNRCPQ----VAFAVEAIVKGD 146 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 ++ +I+AASI+AKVTRDR + H +P YGFD H GY T +H I+ G + HR + Sbjct: 147 ALVPAISAASILAKVTRDRQLAALHIAFPQYGFDVHAGYGTPQHLAAIERHGVTPHHRRS 206 Query: 201 FRPLR 205 F P+R Sbjct: 207 FAPVR 211 >gi|193211692|ref|YP_001997645.1| ribonuclease HII [Chlorobaculum parvum NCIB 8327] gi|238692672|sp|B3QQY0|RNH2_CHLP8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|193085169|gb|ACF10445.1| Ribonuclease H [Chlorobaculum parvum NCIB 8327] Length = 205 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 86/193 (44%), Positives = 113/193 (58%), Gaps = 6/193 (3%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYEKIT 76 +N+ V GIDE GRG LAGPVV AA+ + P GI +DSKK++ + REEL I Sbjct: 12 ENLSRVCGIDEAGRGPLAGPVVAAAVAFPRHFKPTGILEKLDDSKKLTAELREELAPAIR 71 Query: 77 SSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 SA +++ + ID+ NI +AT+ A+ AVE+L P L+DG LP Sbjct: 72 ESAEAWAVAVVDAEIIDRINILQATMLAMNQAVESLAATPELLLVDGNRFRPVLPIPYQT 131 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 ++KGDS SIAAAS++AK RD LM +YP YGFD H GYPTA+H + I G Sbjct: 132 IVKGDSKVFSIAAASVLAKTRRDELMVAYAAEYPAYGFDLHFGYPTARHVEAIARHGRCA 191 Query: 196 IHRLTFRPLRNLS 208 IHR +F+ LR L Sbjct: 192 IHRKSFK-LRKLG 203 >gi|34580789|ref|ZP_00142269.1| ribonuclease HII [Rickettsia sibirica 246] gi|28262174|gb|EAA25678.1| ribonuclease HII [Rickettsia sibirica 246] Length = 193 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 89/177 (50%), Positives = 115/177 (64%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 VAGIDE GRG LAGPVV +A+I+D NI GI DSKK+S KKRE LYE+ITS+ + + + Sbjct: 17 VAGIDEAGRGPLAGPVVASAVIVDNANIITGIKDSKKLSKKKRELLYEQITSNYVWATAI 76 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 SH ID NI +AT A AV NL + P L+DG +D + ++I GD++SLS Sbjct: 77 ISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKDE--RFVSIINGDNLSLS 134 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AKVTRDRLM ++P Y + + GY T +H + I G S HR +FR Sbjct: 135 IAAASIVAKVTRDRLMLDLSAEFPQYLWHKNSGYGTKEHIEAINIHGLSPYHRRSFR 191 >gi|284051073|ref|ZP_06381283.1| ribonuclease HII [Arthrospira platensis str. Paraca] Length = 223 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/200 (41%), Positives = 111/200 (55%), Gaps = 5/200 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKK 67 ++L + + VAGIDEVGRGA GPVV AA+ L I G+ DSKK++ Sbjct: 8 YQLPPAFEQLSWTAVAGIDEVGRGAWFGPVVAAAVQLSETTILELAAAGVKDSKKLTPTL 67 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L I S AI I AS + ID+ NI +AT A+ +V L P+ L+DG + Sbjct: 68 RASLSTLIRSKAIACGIGWASAREIDRLNILQATQLAMRRSVLKLDPPPQLCLVDGNRLI 127 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 +L A++KGDS + IAA+SI+AKV RD LM + YP YG H GY T +H+Q Sbjct: 128 PNLSIPQQAIVKGDSHCIVIAASSILAKVWRDELMTRLDRTYPQYGLAKHKGYGTKQHKQ 187 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 ++ GP HR +F P+R Sbjct: 188 ALQSYGPCFHHRFSFAPVRQ 207 >gi|240170577|ref|ZP_04749236.1| ribonuclease HII [Mycobacterium kansasii ATCC 12478] Length = 239 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/201 (40%), Positives = 116/201 (57%), Gaps = 10/201 (4%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE+ + + PVAG+DEVGRGA AGP+VVAA +L PN + ++DSKK++ K RE+L Sbjct: 20 LESALHRSGLGPVAGVDEVGRGACAGPLVVAACVLGPNRLESLAALDDSKKLTEKAREKL 79 Query: 72 YEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + I A ++ I S +D+ +H A ++ + AV L V P L DG +P Sbjct: 80 FPLICRYALAYHVVFIPSVE---VDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVP- 135 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP + VI GD+ + IAAAS++AKV+RDRLM +YP YGF H GY T H Sbjct: 136 GLPMPSLPVIGGDAAAACIAAASVLAKVSRDRLMVAMDAQYPGYGFAEHKGYSTPAHTLA 195 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 + GP HR +F +R ++ Sbjct: 196 LARLGPCPEHRYSFINVRRVA 216 >gi|116491049|ref|YP_810593.1| RNase HII [Oenococcus oeni PSU-1] gi|290890530|ref|ZP_06553605.1| hypothetical protein AWRIB429_0995 [Oenococcus oeni AWRIB429] gi|116091774|gb|ABJ56928.1| RNase HII [Oenococcus oeni PSU-1] gi|290479926|gb|EFD88575.1| hypothetical protein AWRIB429_0995 [Oenococcus oeni AWRIB429] Length = 209 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 80/200 (40%), Positives = 120/200 (60%), Gaps = 3/200 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 R F+ E + ++ +AGIDEVGRG +AGPVV + IL N DSK+ + ++R Sbjct: 11 RIRFKFENELNDEGYQIIAGIDEVGRGCVAGPVVACSCILPANFNVSETYDSKRFNKRQR 70 Query: 69 EELYEKIT-SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 L E+I +S + + AS ID NI+++ A+ +V NL +P + LID ++ Sbjct: 71 FLLEEEIKKTSCLFAFGEASVTEIDLINIYQSARLAMKRSVMNLLQMPDALLIDAMAV-- 128 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 DL + +I GD +S SIAAASI+AK RDR+M +KYP+YGF+ +VGY T++ ++ Sbjct: 129 DLNLKQLKIIHGDQLSNSIAAASILAKCHRDRIMIKMAEKYPEYGFERNVGYLTSEAKKA 188 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 + E G + IHR TF P+ L Sbjct: 189 LLEYGITPIHRKTFAPISKL 208 >gi|120403186|ref|YP_953015.1| ribonuclease HII [Mycobacterium vanbaalenii PYR-1] gi|166226631|sp|A1T759|RNH2_MYCVP RecName: Full=Ribonuclease HII; Short=RNase HII gi|119956004|gb|ABM13009.1| RNase HII [Mycobacterium vanbaalenii PYR-1] Length = 249 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 79/197 (40%), Positives = 114/197 (57%), Gaps = 4/197 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE+ + + PVAG+DEVGRGA AGP+VVAA +L PN + ++DSKK++ +RE L Sbjct: 20 LESALYRAGLGPVAGVDEVGRGACAGPLVVAACVLGPNRLESLAALDDSKKLNENERERL 79 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ + Q +D+ +H A ++ + AV L + P L DG +P LP Sbjct: 80 FPLIRRYALAYHVVFIPSQEVDRRGVHVANIEGMRRAVAGLSLRPGYVLSDGFRVP-GLP 138 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + V+ GD+ + IAAAS++AKV+RDRLM ++P YGF H GY T H + Sbjct: 139 MPSLPVVGGDAAAACIAAASVLAKVSRDRLMVAMEDEHPGYGFAEHKGYSTRAHSAALAR 198 Query: 191 KGPSCIHRLTFRPLRNL 207 GPS HR +F +R L Sbjct: 199 LGPSSQHRYSFINVRRL 215 >gi|291569313|dbj|BAI91585.1| ribonuclease HII [Arthrospira platensis NIES-39] Length = 231 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/200 (41%), Positives = 111/200 (55%), Gaps = 5/200 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKK 67 ++L + + VAGIDEVGRGA GPVV AA+ L I G+ DSKK++ Sbjct: 8 YQLPPAFEQLSWTAVAGIDEVGRGAWFGPVVAAAVQLSETTILELAAAGVKDSKKLTPTL 67 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L I S AI I AS + ID+ NI +AT A+ +V L P+ L+DG + Sbjct: 68 RASLSTLIRSKAIACGIGWASAREIDRLNILQATQLAMRRSVLKLDPPPQLCLVDGNRLI 127 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 +L A++KGDS + IAA+SI+AKV RD LM + YP YG H GY T +H+Q Sbjct: 128 PNLSIPQQAIVKGDSHCIVIAASSILAKVWRDELMTRLDRTYPQYGLAKHKGYGTKQHKQ 187 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 ++ GP HR +F P+R Sbjct: 188 ALQSYGPCFHHRFSFAPVRQ 207 >gi|313896353|ref|ZP_07829906.1| ribonuclease HII [Selenomonas sp. oral taxon 137 str. F0430] gi|312975152|gb|EFR40614.1| ribonuclease HII [Selenomonas sp. oral taxon 137 str. F0430] Length = 258 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 91/186 (48%), Positives = 118/186 (63%), Gaps = 8/186 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI---IS 82 VAG+DE GRG LAGPV VAA IL +NDSKK+S K R EL+E+IT AI ++ Sbjct: 72 VAGVDEAGRGPLAGPVAVAAAILPKELYLPRLNDSKKLSAKVRAELFEEITEKAIAYHVT 131 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDS 141 + A+ ID+ NI +AT +Y AV L P L+D +P+ +P Q+ +IKGD+ Sbjct: 132 LIDAAE--IDRINILQATRCGMYEAVAALTPAPEEVLVDAVELPQLRMPVQS--IIKGDA 187 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 S SIAAASI+AKVTRDRLM +YP YGF H GY TA+H I+ G + IHR TF Sbjct: 188 KSASIAAASILAKVTRDRLMERYDTEYPGYGFAGHKGYGTAEHIAAIRALGVTPIHRRTF 247 Query: 202 RPLRNL 207 P+R++ Sbjct: 248 EPIRSM 253 >gi|300691590|ref|YP_003752585.1| ribonuclease HII (RNase HII) [Ralstonia solanacearum PSI07] gi|299078650|emb|CBJ51308.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum PSI07] Length = 242 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 79/185 (42%), Positives = 114/185 (61%), Gaps = 11/185 (5%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISSA 86 G+DE GRG LAGPV AA++L+P G+ DSK ++ KKRE LY++I A+ ++ A Sbjct: 37 GVDEAGRGPLAGPVTAAAVVLNPRKPIKGLADSKVLTAKKREALYDEIVEKALAWHVAEA 96 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLPCQAFAV---IKGD 140 + + ID+ NI AT+ A+ AV+ + V+P +DG P+ AFAV +KGD Sbjct: 97 TVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVDGNRCPQ----VAFAVEAIVKGD 152 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 ++ +I+AASI+AKVTRDR + H +P YGFD H GY T +H I+ G + HR + Sbjct: 153 ALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAGYGTPQHLAAIELHGVTPHHRRS 212 Query: 201 FRPLR 205 F P+R Sbjct: 213 FAPVR 217 >gi|323143575|ref|ZP_08078252.1| ribonuclease HII [Succinatimonas hippei YIT 12066] gi|322416638|gb|EFY07295.1| ribonuclease HII [Succinatimonas hippei YIT 12066] Length = 213 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 77/183 (42%), Positives = 107/183 (58%), Gaps = 1/183 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 V G DE GRG L G VV A +ILDP+ G+ DSKK+S KKR+ L +I +A+ I Sbjct: 20 VCGADEAGRGPLVGNVVAACVILDPSRPISGLADSKKLSEKKRDALALQIKENALAYGIG 79 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + + ID+ NI A+L+A+ A N+ LIDG + D P AV+KGD+ Sbjct: 80 QCTPKEIDRMNILYASLEAMRRAYVNMHKTCELMLIDGNKLIPDFPLAMQAVVKGDARVP 139 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AK RD + K+YP+YGF H GYPTA H +V+ + +R+T+ P+ Sbjct: 140 EISAASILAKTERDAQLYALDKQYPEYGFARHKGYPTAAHFEVLHKLPLLSCYRMTYAPI 199 Query: 205 RNL 207 R L Sbjct: 200 RKL 202 >gi|282883154|ref|ZP_06291753.1| ribonuclease HII [Peptoniphilus lacrimalis 315-B] gi|281296966|gb|EFA89463.1| ribonuclease HII [Peptoniphilus lacrimalis 315-B] Length = 205 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 84/194 (43%), Positives = 114/194 (58%), Gaps = 9/194 (4%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E R+K +AGIDEVGRG+L G V+ AII+ ++ G+NDSKK++ KKR+ELY K Sbjct: 7 EKDYRKKGSKLIAGIDEVGRGSLFGDVLSCAIIMKEDSNIEGVNDSKKLTAKKRKELYNK 66 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALIDGRSIPE 127 I ++ + I A + IDK NI AT ++ A+ENL+ V+P LID +I Sbjct: 67 ILEDSLAVGIGRADAKTIDKLNIKMATHLSMVRAIENLRDSQGNLVVPDLVLIDAENIET 126 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + ++IKGD SIA ASIIAKV RD L YP YG + H GY T H++ Sbjct: 127 TIF--QHSIIKGDENCYSIACASIIAKVYRDSLCDKWATIYPGYGIEKHKGYGTKFHREA 184 Query: 188 IKEKGPSCIHRLTF 201 +K GPS +HR +F Sbjct: 185 LKAYGPSPMHRKSF 198 >gi|110598302|ref|ZP_01386577.1| Ribonuclease H [Chlorobium ferrooxidans DSM 13031] gi|110340110|gb|EAT58610.1| Ribonuclease H [Chlorobium ferrooxidans DSM 13031] Length = 205 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 76/183 (41%), Positives = 113/183 (61%), Gaps = 6/183 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-----INDSKKISHKKREELYEKITSSAI 80 V GIDE GRG LAGPVV AA++ P G +NDSKK+S + REEL I ++A+ Sbjct: 16 VCGIDEAGRGPLAGPVVAAAVVFSRWFSPEGSILEKLNDSKKLSSRVREELAPAIKAAAL 75 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 +++ + ID+ NI +AT+ A+ ++E L ++P L+DG LP ++KG Sbjct: 76 YWAVTEIEPEIIDRINIFQATMLAMNRSIEALGMLPELLLVDGNRFRPHLPIPYETIVKG 135 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D+ SIAAAS++AK RD +M + +P+YGFD H GY TA+H + I++ G +HR+ Sbjct: 136 DAKVFSIAAASVLAKTRRDEIMTACSRSWPEYGFDRHFGYATAEHVRAIRQYGRCPLHRV 195 Query: 200 TFR 202 +FR Sbjct: 196 SFR 198 >gi|110639206|ref|YP_679415.1| RNase HII [Cytophaga hutchinsonii ATCC 33406] gi|123163320|sp|Q11R91|RNH2_CYTH3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|110281887|gb|ABG60073.1| RNase HII [Cytophaga hutchinsonii ATCC 33406] Length = 202 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 75/177 (42%), Positives = 110/177 (62%), Gaps = 2/177 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG +AGPVV AA+IL PN +NDSKK++ K+RE L + I A+ ++ Sbjct: 16 AGLDEAGRGCMAGPVVAAAVILPPNYKHSLLNDSKKLTIKQRELLRQDIIRDALDYHVAE 75 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQ-VIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SH ID+ NI AT+ A++ AV+ L+ P LIDG + + +++GD + L Sbjct: 76 VSHTVIDQINILNATMKAMHKAVKGLKKQQPNLLLIDGNRFKQYTGIEHVCIVQGDGLYL 135 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAAS++AK RD LM K++P+YG+D + GY T KH+ ++ G + HR +F Sbjct: 136 SIAAASVLAKTHRDSLMERLAKEHPEYGWDVNAGYATEKHRLAMETHGLTPYHRTSF 192 >gi|94986666|ref|YP_594599.1| ribonuclease HII [Lawsonia intracellularis PHE/MN1-00] gi|189043608|sp|Q1MRU8|RNH2_LAWIP RecName: Full=Ribonuclease HII; Short=RNase HII gi|94730915|emb|CAJ54278.1| ribonuclease HII [Lawsonia intracellularis PHE/MN1-00] Length = 224 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 89/211 (42%), Positives = 124/211 (58%), Gaps = 18/211 (8%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKK 62 S+P PH +V + AG+DEVGRG LAGPVV A+IL P+ I G+ DSK Sbjct: 15 QSLPITPH----ELVYDNLSLLTAGLDEVGRGCLAGPVVAGAVIL-PDTISIDGLADSKT 69 Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 IS +R L +KI +AI I + ID+ NI +A+L A+ HA L+ P LID Sbjct: 70 ISSNRRYILAKKIYETAISWGIGVVWPKEIDEINILQASLKAMAHAATVLKTFPELLLID 129 Query: 122 G-RSIPED---------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 G ++IP+ LP Q ++IKGD+ +I+AASIIAK RD LM K+YP Y Sbjct: 130 GNKAIPQKFFIQFGWNFLPIQ-HSIIKGDASIPAISAASIIAKTFRDTLMSKLDKRYPQY 188 Query: 172 GFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 F + GY + H++++++ GPS IHR+TF+ Sbjct: 189 NFSKNKGYGSKTHREILQKIGPSPIHRMTFK 219 >gi|31794078|ref|NP_856571.1| ribonuclease HII [Mycobacterium bovis AF2122/97] gi|39932282|sp|Q7TXM7|RNH2_MYCBO RecName: Full=Ribonuclease HII; Short=RNase HII gi|31619673|emb|CAD96613.1| PROBABLE RIBONUCLEASE HII PROTEIN RNHB (RNASE HII) [Mycobacterium bovis AF2122/97] Length = 264 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 82/201 (40%), Positives = 117/201 (58%), Gaps = 10/201 (4%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE+ + + PVAG+DEVGRGA AGP+VVAA +L P I ++DSKK+S + RE+L Sbjct: 23 LESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDDSKKLSEQAREKL 82 Query: 72 YEKITSSAI----ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + I A+ + I SA +D+H +H A ++ + AV L V P L DG +P Sbjct: 83 FPLICRYAVAYHVVFIPSAE---VDRHGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVP- 138 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP + VI GD+ + IAAAS++AKV+RDR+M +P YGF H GY T H + Sbjct: 139 GLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAHSRA 198 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 + GP HR +F +R ++ Sbjct: 199 LARLGPCPQHRYSFINVRRVA 219 >gi|241662957|ref|YP_002981317.1| ribonuclease HII [Ralstonia pickettii 12D] gi|309782124|ref|ZP_07676854.1| ribonuclease HII [Ralstonia sp. 5_7_47FAA] gi|240864984|gb|ACS62645.1| Ribonuclease H [Ralstonia pickettii 12D] gi|308919190|gb|EFP64857.1| ribonuclease HII [Ralstonia sp. 5_7_47FAA] Length = 232 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 77/184 (41%), Positives = 112/184 (60%), Gaps = 5/184 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 + G+DE GRG LAGPV AA++L+P G+ DSK ++ KKRE LY++I A+ ++ Sbjct: 28 LCGVDEAGRGPLAGPVTAAAVVLNPRKPIKGLADSKILTAKKREALYDEIVEKALAWHVA 87 Query: 85 SASHQYIDKHNIHKATLDAI---YHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 A+ + ID+ NI AT+ A+ H V L +P +DG P+ + AV+KGD+ Sbjct: 88 EATVEEIDRINILHATMLAMQRAVHGVAALGTLPDLVQVDGNRCPQ-VAFAVEAVVKGDA 146 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + +I+AASI+AKVTRDR + H ++P YGFD H GY T +H I G + HR +F Sbjct: 147 LVPAISAASILAKVTRDRQLAALHVEFPLYGFDVHAGYGTPQHLAAIDLHGVTPHHRRSF 206 Query: 202 RPLR 205 P+R Sbjct: 207 APVR 210 >gi|290894532|ref|ZP_06557482.1| rnhB protein [Listeria monocytogenes FSL J2-071] gi|290555913|gb|EFD89477.1| rnhB protein [Listeria monocytogenes FSL J2-071] Length = 261 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 89/204 (43%), Positives = 127/204 (62%), Gaps = 5/204 (2%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 N + E +E + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK++ Sbjct: 53 NKLEEMKQYETDLF--QQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQL 110 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S KR+ LYE I + AI + + H ID+ NI++AT A+ A++ LQ P LID Sbjct: 111 SEAKRDALYETIQTEAIAVGVGIIEHNVIDQVNIYEATKLAMRAALDQLQPEPDFVLID- 169 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 ++P ++IKGD+ S+SIAAASIIAKVTRDRLM++ + YP Y F +++GY T Sbjct: 170 -AMPLKYSDAELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDETYPGYDFANNMGYGTK 228 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRN 206 KH + G IHR++F P++ Sbjct: 229 KHLHGLDTIGICPIHRISFAPVKE 252 >gi|83749784|ref|ZP_00946758.1| Ribonuclease HII [Ralstonia solanacearum UW551] gi|207743230|ref|YP_002259622.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum IPO1609] gi|83723541|gb|EAP70745.1| Ribonuclease HII [Ralstonia solanacearum UW551] gi|206594627|emb|CAQ61554.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum IPO1609] Length = 236 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 75/183 (40%), Positives = 112/183 (61%), Gaps = 5/183 (2%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISSA 86 G+DE GRG LAGPV A++L+P G+ DSK ++ KKRE LY++I A+ ++ A Sbjct: 31 GVDEAGRGPLAGPVTAGAVVLNPRKPIKGLADSKVLTAKKREALYDEIVEKALAWHVAEA 90 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + + ID+ NI AT+ A+ AV+ + V+P +DG P+ + A++KGD++ Sbjct: 91 TVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVDGNRCPQ-VAFAVEAIVKGDALV 149 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKVTRDR + H +P YGFD H GY T +H I+ G + HR +F P Sbjct: 150 PAISAASILAKVTRDRQLAALHIAFPHYGFDVHAGYGTPQHLAAIERHGVTPHHRRSFAP 209 Query: 204 LRN 206 +R Sbjct: 210 VRR 212 >gi|156742530|ref|YP_001432659.1| ribonuclease HII [Roseiflexus castenholzii DSM 13941] gi|189043650|sp|A7NM86|RNH2_ROSCS RecName: Full=Ribonuclease HII; Short=RNase HII gi|156233858|gb|ABU58641.1| Ribonuclease H [Roseiflexus castenholzii DSM 13941] Length = 224 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 82/189 (43%), Positives = 110/189 (58%), Gaps = 7/189 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHKKREELYEKITSSAI 80 +AGIDE GRG AGPVV AA+IL I G+ DSK ++ +R L+E+ITS A+ Sbjct: 23 IAGIDEAGRGCWAGPVVAAAVILPERVIAKPELLDGVADSKMLTPAQRVALFERITSLAV 82 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ S ID H I AT A+ A+ L + LID + + P ++KG Sbjct: 83 AWAVGSVPAHVIDSHGILPATRLAMQVALLRLPLPADVLLIDAVRL-DGWPLPQRVLVKG 141 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D LSIAAASIIAKV RDR M + + YGF +H GY TA HQ+ ++ GP+ HRL Sbjct: 142 DVRCLSIAAASIIAKVMRDRFMEGLGRYWTRYGFAAHKGYGTAAHQEALRRYGPTPHHRL 201 Query: 200 TFRPLRNLS 208 TFRPL +++ Sbjct: 202 TFRPLCDMA 210 >gi|20372971|dbj|BAB91155.1| ribonuclease HII [Geobacillus stearothermophilus] Length = 259 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 82/182 (45%), Positives = 118/182 (64%), Gaps = 3/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AGIDE GRG LAGPVV A++IL P+ G++DSK+++ KRE L+ +I + A+ + I Sbjct: 74 IAGIDEAGRGPLAGPVVAASVILPPDAYLPGLDDSKRLTAAKREALFAQIEACAVAVGIG 133 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S ID+ NI++AT A+ AV L P L+D ++P LP + +KGD+ S Sbjct: 134 IVSAAEIDERNIYEATKQAMAKAVSALSPPPDYLLVDAMAVPCALPQRRL--MKGDANSA 191 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASI+AKVTRDRLM+ ++YP YGF H+GY T +H + I+ G + HR +F P+ Sbjct: 192 SIAAASIMAKVTRDRLMKELDRRYPQYGFARHMGYGTPEHLEAIRRYGITPEHRRSFAPV 251 Query: 205 RN 206 + Sbjct: 252 KE 253 >gi|207723368|ref|YP_002253767.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum MolK2] gi|206588567|emb|CAQ35530.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum MolK2] Length = 236 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 78/186 (41%), Positives = 113/186 (60%), Gaps = 11/186 (5%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISSA 86 G+DE GRG LAGPV A++L+P G+ DSK ++ KKRE LY++I A+ ++ A Sbjct: 31 GVDEAGRGPLAGPVTAGAVVLNPRKPIKGLADSKVLTAKKREALYDEIVEKALAWHVAEA 90 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLPCQAFAV---IKGD 140 + + ID+ NI AT+ A+ AV+ + V+P +DG P+ AFAV +KGD Sbjct: 91 TVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVDGNRCPQ----VAFAVEAIVKGD 146 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 ++ +I+AASI+AKVTRDR + H +P YGFD H GY T +H I+ G + HR + Sbjct: 147 ALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAGYGTPQHLAAIERHGVTPHHRRS 206 Query: 201 FRPLRN 206 F P+R Sbjct: 207 FAPVRR 212 >gi|157828142|ref|YP_001494384.1| ribonuclease HII [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932842|ref|YP_001649631.1| ribonuclease HII [Rickettsia rickettsii str. Iowa] gi|166226649|sp|A8GR51|RNH2_RICRS RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043649|sp|B0BWJ9|RNH2_RICRO RecName: Full=Ribonuclease HII; Short=RNase HII gi|157800623|gb|ABV75876.1| ribonuclease HII [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907929|gb|ABY72225.1| ribonuclease HII [Rickettsia rickettsii str. Iowa] Length = 193 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 90/177 (50%), Positives = 114/177 (64%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 VAGIDE GRG LAGPVV +A+I+D NI GI DSKK+S KKRE LYE+ITS+ + + Sbjct: 17 VAGIDEAGRGPLAGPVVASAVIVDNANIITGIKDSKKLSKKKRELLYEQITSNYAWATAI 76 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 SH ID NI +AT A AV NL + P L+DG +D + ++I GD++SLS Sbjct: 77 ISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKDE--RFVSIINGDNLSLS 134 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASIIAKVTRDRLM ++P Y + + GY T +H + I G S HR +FR Sbjct: 135 IAAASIIAKVTRDRLMLDLSAEFPQYLWHKNSGYGTKEHIEAINIHGLSPYHRRSFR 191 >gi|158337229|ref|YP_001518404.1| ribonuclease HII [Acaryochloris marina MBIC11017] gi|189043525|sp|B0CAM1|RNH2_ACAM1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|158307470|gb|ABW29087.1| ribonuclease HII [Acaryochloris marina MBIC11017] Length = 198 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 80/183 (43%), Positives = 109/183 (59%), Gaps = 5/183 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI- 80 +AG+DEVGRGAL GPVV A +IL I G+ DSKK+S ++R L +I A Sbjct: 8 IAGVDEVGRGALFGPVVAATVILSDGAIEQLVAQGMTDSKKLSPQRRMILMNQIREVATG 67 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 + AS ID+ NI +A+L A+ AV L P+ L+DG +LP V+KGD Sbjct: 68 FRVGMASVYEIDRLNILQASLLAMRRAVLGLPSTPQLCLVDGNQRIPNLPVPQRTVVKGD 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 IAAASI+AKV RD+L+ ++YP Y S+ GY +AKH+Q ++E GP+ HRL+ Sbjct: 128 QSEPEIAAASILAKVWRDQLIVRLDQRYPGYDLASNKGYGSAKHRQALRELGPTRQHRLS 187 Query: 201 FRP 203 F P Sbjct: 188 FAP 190 >gi|303246153|ref|ZP_07332434.1| Ribonuclease H [Desulfovibrio fructosovorans JJ] gi|302492549|gb|EFL52420.1| Ribonuclease H [Desulfovibrio fructosovorans JJ] Length = 206 Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 82/186 (44%), Positives = 112/186 (60%), Gaps = 10/186 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83 +AG+DE GRG LAGPVV A+IL + ++PF + DSKK+S +RE L I + AI ++ Sbjct: 7 IAGVDEAGRGCLAGPVVAGAVILPEAYDLPF-LTDSKKLSAARREGLAPAIKAQAIAWAV 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPED------LPCQAFAV 136 A ID+ NI +AT A+ AV L+V P + IDG + IP P A+ Sbjct: 66 GMAWPVEIDRINILQATFAAMSRAVRALRVRPEALKIDGNKRIPAAHLANIAAPPPQEAI 125 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 I GD +I+AASI+AK +RD+LM I +++P YGF SH GY H ++E GP + Sbjct: 126 IGGDLSVPAISAASILAKTSRDKLMTIFDRQFPGYGFASHKGYGAKAHLAALRELGPCRL 185 Query: 197 HRLTFR 202 HRLTFR Sbjct: 186 HRLTFR 191 >gi|255037595|ref|YP_003088216.1| Ribonuclease H [Dyadobacter fermentans DSM 18053] gi|254950351|gb|ACT95051.1| Ribonuclease H [Dyadobacter fermentans DSM 18053] Length = 208 Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 74/181 (40%), Positives = 114/181 (62%), Gaps = 1/181 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85 AG+DEVGRG LAGPVV AA+IL + +NDSK+++ +R EL ++I ++ +++ Sbjct: 13 AGLDEVGRGCLAGPVVAAAVILPRDYKHSFLNDSKQLTKAQRLELEKEIIRESVCWAVAE 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + ID+ NI KA+ A++ AV+ L+V P L+DG +IKGD+ LS Sbjct: 73 VDNLEIDRINILKASFLAMHRAVDKLRVRPEHLLVDGNRFTPYPMIPHTCIIKGDAHYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 IAAAS++AK RD LM +++P YG++ +VGYPT H++ I GP HR+TF+ ++ Sbjct: 133 IAAASVLAKNYRDELMSNLSRQFPHYGWEQNVGYPTIHHRKAIVLHGPCSYHRMTFKLIK 192 Query: 206 N 206 + Sbjct: 193 S 193 >gi|203283974|ref|YP_002221714.1| ribonuclease H [Borrelia duttonii Ly] gi|238690551|sp|B5RKU7|RNH2_BORDL RecName: Full=Ribonuclease HII; Short=RNase HII gi|201083417|gb|ACH93008.1| ribonuclease H [Borrelia duttonii Ly] Length = 181 Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 78/178 (43%), Positives = 108/178 (60%), Gaps = 1/178 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + GIDEVGRG + GPV+ AA+I N ++DSKK++ KRE L I +A + + Sbjct: 2 ICGIDEVGRGCIFGPVLSAAVIFKSKPNFLNELDDSKKLTKTKREYLSALILENAYYAFA 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S++ IDK NIH A+L A+ A + L + L+DG+ IP+ Q A+IKGDS+ Sbjct: 62 DISNEIIDKINIHNASLLAMQIAYQKLNIECNLVLVDGKFIPKIQAKQIRAIIKGDSMID 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I AASIIAKV RD+LM K YP YG + GYPT +H+ IK+ G +HR +F+ Sbjct: 122 EIKAASIIAKVQRDKLMVEYDKIYPLYGLKKNKGYPTKEHKDAIKKHGILSLHRKSFQ 179 >gi|220906598|ref|YP_002481909.1| ribonuclease HII [Cyanothece sp. PCC 7425] gi|219863209|gb|ACL43548.1| Ribonuclease H [Cyanothece sp. PCC 7425] Length = 206 Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 78/198 (39%), Positives = 120/198 (60%), Gaps = 3/198 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKR 68 P ++E ++ + GIDEVGRG L+GPVV AA++L P G+ DSK +S ++R Sbjct: 5 PDLQVEQTFWQRGQLRLVGIDEVGRGCLSGPVVAAAVLLPAYCEPIPGVRDSKTLSAQRR 64 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + L +KI AI + I +AS I++ NI +AT A+ A++ + LIDGR +P Sbjct: 65 QVLDQKIRQQAIAVGIGAASVAEINQVNILQATYLAMQRALQRIGGYDH-LLIDGRPVPV 123 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 P A+++GD+ S +IA ASI+AKV RDR M+ ++YP YG++ +VGY T +H Sbjct: 124 FEPEHHTAIVEGDASSYAIACASIVAKVRRDRFMQHLARRYPGYGWEQNVGYGTKQHLAA 183 Query: 188 IKEKGPSCIHRLTFRPLR 205 I G + HR +F+P++ Sbjct: 184 ITSLGVTPHHRRSFKPVQ 201 >gi|296127016|ref|YP_003634268.1| ribonuclease H [Brachyspira murdochii DSM 12563] gi|296018832|gb|ADG72069.1| Ribonuclease H [Brachyspira murdochii DSM 12563] Length = 232 Score = 134 bits (338), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 84/192 (43%), Positives = 115/192 (59%), Gaps = 13/192 (6%) Query: 26 VAGIDEVGRGALAGPVVVAAII--LDPNN--------IPFGINDSKKISHKKREELYEKI 75 + GIDEVGRG L GPV VAA+I L+ NN I +DSKKIS KKREELY+KI Sbjct: 30 ICGIDEVGRGCLFGPVTVAAVIMPLELNNDVEVARENIVEEADDSKKISAKKREELYDKI 89 Query: 76 TSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 S A+ S+ S + ID+ NI+ AT A+ +AV NL + P LID ++ D+ + Sbjct: 90 ISKALCYSVYSVDAKTIDEINIYNATKLAMVNAVRNLNIKPDILLID--AVKLDIDIKQC 147 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 ++ KGD S SI ASI+AKV RDR+M + Y Y + GY T +H + I+ G S Sbjct: 148 SITKGDFKSYSIGCASIVAKVERDRMMNELPEVYQKYKVAKNKGYGTKEHMKAIEMYGAS 207 Query: 195 CIHRLTFRPLRN 206 +HR +F P+++ Sbjct: 208 DMHRYSFEPIKS 219 >gi|296117635|ref|ZP_06836219.1| ribonuclease HII [Corynebacterium ammoniagenes DSM 20306] gi|295969366|gb|EFG82607.1| ribonuclease HII [Corynebacterium ammoniagenes DSM 20306] Length = 223 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 79/190 (41%), Positives = 106/190 (55%), Gaps = 4/190 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72 E + + + PVAG+DE GRGA AGP+ +AA IL IP + DSKK+S K+REEL+ Sbjct: 11 EVALSKAGLGPVAGVDEAGRGACAGPITIAACILPEKIIPSLATLTDSKKLSAKQREELF 70 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I +A+ SI IDKH I A + + AV L+V PR L D + Sbjct: 71 PAIQRNALAYSIVHIDPGDIDKHGIQHANVSGMRRAVARLEVRPRYILTDALKV-SGFTA 129 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 V+ GD IAAAS++AKV+RD +M +KYP YG H GY TA H + IK Sbjct: 130 PYLPVVGGDFAIRCIAAASVLAKVSRDHIMEELEEKYPGYGLGKHKGYGTAVHTEAIKTL 189 Query: 192 GPSCIHRLTF 201 G + IHR+++ Sbjct: 190 GATAIHRMSY 199 >gi|325141206|gb|EGC63706.1| ribonuclease HII [Neisseria meningitidis CU385] Length = 194 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 83/184 (45%), Positives = 109/184 (59%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L E I A Sbjct: 5 TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKDQAAAWHV 63 Query: 85 SA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +A S + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS Sbjct: 64 AAASPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKI 123 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183 Query: 204 LRNL 207 +RNL Sbjct: 184 VRNL 187 >gi|268611246|ref|ZP_06144973.1| ribonuclease HII [Ruminococcus flavefaciens FD-1] Length = 208 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 88/191 (46%), Positives = 122/191 (63%), Gaps = 3/191 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F+ ++ +R K+ + GIDE GRG LAG V AA+IL+ + + +NDSKKIS K+RE L Sbjct: 11 FDYDSELR-KDYPVIVGIDEAGRGPLAGDVYAAAVILNDDTLINYLNDSKKISEKRRELL 69 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+++ A SI++AS + ID+ NI +AT A+ A E L V L+DG +P D+ Sbjct: 70 YDEVIEKAEKYSIATASVKEIDELNILQATFLAMKRAYEGLGVRADLVLVDGNKLP-DID 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VIKGD+ S SI+AASI+AKV RDR MR +KYP Y FD H GY T H + ++E Sbjct: 129 AEMRYVIKGDATSASISAASILAKVARDRYMRDLAEKYPQYEFDRHKGYGTKLHYEKLEE 188 Query: 191 KGPSCIHRLTF 201 G S +HR +F Sbjct: 189 FGISEVHRRSF 199 >gi|311694071|gb|ADP96944.1| ribonuclease HII [marine bacterium HP15] Length = 228 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 81/184 (44%), Positives = 114/184 (61%), Gaps = 4/184 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 +AG+DEVGRG L G VV AA+ILDP+ G+ DSKK++ K+R LY++I A SI Sbjct: 18 LAGVDEVGRGPLIGAVVTAAVILDPDRPIAGLADSKKLTEKRRNALYDQILEHAKAWSIG 77 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 ID+ NI++AT+ A+ AV L V+P L+DG P+ P + V+KGDS Sbjct: 78 RCESHEIDRLNIYQATMLAMERAVSGLAVVPEYVLVDGNRCPKWRWPSEP--VVKGDSRV 135 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASIIAKVTRDR M ++P +G H GYPT H + ++ G + HR +FRP Sbjct: 136 AAISAASIIAKVTRDREMEALEARFPGFGLAQHKGYPTPVHLEALRRLGATIEHRRSFRP 195 Query: 204 LRNL 207 ++ + Sbjct: 196 VQEV 199 >gi|317508413|ref|ZP_07966083.1| ribonuclease HII [Segniliparus rugosus ATCC BAA-974] gi|316253260|gb|EFV12660.1| ribonuclease HII [Segniliparus rugosus ATCC BAA-974] Length = 215 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 75/195 (38%), Positives = 114/195 (58%), Gaps = 6/195 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN---IPFGINDSKKISHKKREE 70 E+++R + VAG+DE GRGA AGP+VVA+ +L P + +P G++DSK+++ +KRE Sbjct: 4 FESVLRRAGLAAVAGVDEAGRGACAGPLVVASCVLKPRSARALP-GLDDSKRLTAQKREW 62 Query: 71 LYEKI-TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L +I +A + +D +H+A L+ + AV L +P L+DG +P L Sbjct: 63 LEPRIFQQAASWHVVVMPPGEVDAMGVHQANLEGMRRAVAGLAEVPDYVLLDGFEVPR-L 121 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A V+ GD + IAAAS++AKV RDR+M + +P YGF +H GY TA H + Sbjct: 122 GAPARRVVGGDRLVACIAAASVLAKVARDRIMAELDEAHPGYGFATHKGYCTAAHMAALA 181 Query: 190 EKGPSCIHRLTFRPL 204 E GP HR ++ P+ Sbjct: 182 ELGPCDQHRYSYAPV 196 >gi|46579247|ref|YP_010055.1| ribonuclease HII [Desulfovibrio vulgaris str. Hildenborough] gi|81404983|sp|Q72DU5|RNH2_DESVH RecName: Full=Ribonuclease HII; Short=RNase HII gi|46448661|gb|AAS95314.1| ribonuclease HII [Desulfovibrio vulgaris str. Hildenborough] gi|311233076|gb|ADP85930.1| Ribonuclease H [Desulfovibrio vulgaris RCH1] Length = 220 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 85/190 (44%), Positives = 108/190 (56%), Gaps = 11/190 (5%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85 AGIDE GRG LAGPVV AA+IL G+ DSKK++ +RE L E I S A+ I Sbjct: 19 AGIDEAGRGCLAGPVVAAAVILPQEYALPGLTDSKKLTAARRESLAEGIRSCAVTWGIGV 78 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIP----EDLPCQAF-----A 135 + ID+ NI +AT A+ AV L+ P + LIDG +++P L C A Sbjct: 79 VWPRDIDRINILQATFRAMARAVRVLRQPPPAILIDGDKTLPPHVLTSLSCDGHLPTQRA 138 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 +I GD +I+AASI+AK RDRLM ++Y YGF H GY TA+H I GP Sbjct: 139 IIGGDGCIPAISAASILAKTFRDRLMDTLDRRYHGYGFAKHKGYGTAEHLAAIAAHGPCA 198 Query: 196 IHRLTFRPLR 205 HRLTFR +R Sbjct: 199 QHRLTFRGVR 208 >gi|300704217|ref|YP_003745820.1| ribonuclease hII (RNAse hII) [Ralstonia solanacearum CFBP2957] gi|299071881|emb|CBJ43210.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum CFBP2957] Length = 236 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 74/183 (40%), Positives = 112/183 (61%), Gaps = 5/183 (2%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISSA 86 G+DE GRG LAGPV A++L+P G+ DSK ++ K+RE LY++I A+ ++ A Sbjct: 31 GVDEAGRGPLAGPVTAGAVVLNPRKPIKGLADSKVLTAKRREALYDEIVEKALAWHVAEA 90 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + + ID+ NI AT+ A+ AV+ + V+P +DG P+ + A++KGD++ Sbjct: 91 TVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVDGNRCPQ-VAFAVEAIVKGDALV 149 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKVTRDR + H +P YGFD H GY T +H I+ G + HR +F P Sbjct: 150 PAISAASILAKVTRDRQLAALHVAFPHYGFDVHAGYGTPQHLAAIERHGVTPHHRRSFAP 209 Query: 204 LRN 206 +R Sbjct: 210 VRR 212 >gi|269123118|ref|YP_003305695.1| Ribonuclease H [Streptobacillus moniliformis DSM 12112] gi|268314444|gb|ACZ00818.1| Ribonuclease H [Streptobacillus moniliformis DSM 12112] Length = 199 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 81/186 (43%), Positives = 112/186 (60%), Gaps = 6/186 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84 + G+DE GRG LAGPVV A + ++ + +NDSKK++ KKR EL+ +T++ I I Sbjct: 13 IIGVDEAGRGPLAGPVVAACVCINKYSKKLEELNDSKKLTDKKRRELFNYLTTNDDIKIG 72 Query: 85 SA--SHQYIDKHNIHKATLDAIYHAVENLQVIPRS-ALIDGRSIPEDLPCQAFAVIKGDS 141 + ID+ NI AT A+ +A++N++ + L+DG + + A++KGD Sbjct: 73 VGIVDEKVIDEINILNATFLAMNNALDNMEKDEKDLVLVDGNKEIKGYLGKQEAIVKGDG 132 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SLSIAAASIIAKVTRD +M YP Y F H GY T H + IKEKG IHRL+F Sbjct: 133 KSLSIAAASIIAKVTRDNIMEEYDLIYPGYEFAKHKGYGTKMHYECIKEKGRCYIHRLSF 192 Query: 202 RPLRNL 207 L+NL Sbjct: 193 --LKNL 196 >gi|120603190|ref|YP_967590.1| ribonuclease HII [Desulfovibrio vulgaris DP4] gi|166225183|sp|A1VFE7|RNH2_DESVV RecName: Full=Ribonuclease HII; Short=RNase HII gi|120563419|gb|ABM29163.1| RNase HII [Desulfovibrio vulgaris DP4] Length = 220 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 84/190 (44%), Positives = 108/190 (56%), Gaps = 11/190 (5%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85 AGIDE GRG LAGPVV AA+IL G+ DSKK++ +RE L E I S A+ + Sbjct: 19 AGIDEAGRGCLAGPVVAAAVILPQEYTLPGLTDSKKLTAARRESLAEGIRSCAVTWGLGV 78 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIP----EDLPCQAF-----A 135 + ID+ NI +AT A+ AV L+ P + LIDG +++P L C A Sbjct: 79 VWPRDIDRINILQATFRAMARAVRVLRQPPPALLIDGDKTLPPHVLTTLSCDGHLPTQRA 138 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 +I GD +I+AASI+AK RDRLM ++Y YGF H GY TA+H I GP Sbjct: 139 IIGGDGCIPAISAASILAKTFRDRLMDTLDRRYHGYGFAKHKGYGTAEHLAAIAAHGPCA 198 Query: 196 IHRLTFRPLR 205 HRLTFR +R Sbjct: 199 QHRLTFRGVR 208 >gi|83816348|ref|YP_446472.1| ribonuclease HII [Salinibacter ruber DSM 13855] gi|97189257|sp|Q2S009|RNH2_SALRD RecName: Full=Ribonuclease HII; Short=RNase HII gi|83757742|gb|ABC45855.1| ribonuclease HII [Salinibacter ruber DSM 13855] Length = 200 Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 80/196 (40%), Positives = 110/196 (56%), Gaps = 9/196 (4%) Query: 20 EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E+ +W VAG+DE GRG LAGPVV AA+I+ P I DSK +S +R + Sbjct: 5 ERRLWADGYERVAGLDEAGRGCLAGPVVAAAVIMPPQVEITAIQDSKALSEGQRLDARAT 64 Query: 75 ITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL---P 130 I A+ SI+ S ID NI +A L+A+ A + P L+DG +L P Sbjct: 65 IEDEAVAASIARCSPTEIDDRNILQAALEAMRRAASGCRPPPDFVLVDGNQWDRNLVDAP 124 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 V+KGD+ S SIAAASI+AK RD LMR H+ +P+Y + S+VGYPT +H ++E Sbjct: 125 WPHETVVKGDAKSQSIAAASILAKTERDALMRDLHEAHPEYDWASNVGYPTQQHYDALRE 184 Query: 191 KGPSCIHRLTFRPLRN 206 G + HR +F R+ Sbjct: 185 HGATPHHRQSFTLFRD 200 >gi|289548139|ref|YP_003473127.1| ribonuclease H [Thermocrinis albus DSM 14484] gi|289181756|gb|ADC89000.1| Ribonuclease H [Thermocrinis albus DSM 14484] Length = 203 Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 79/183 (43%), Positives = 107/183 (58%), Gaps = 4/183 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DE GRG LAGP+V A+IL P PF DSKK+S +REE Y I A+ I + Sbjct: 16 VAGVDEAGRGPLAGPLVACAVILPPYTEPFLKGDSKKLSPSEREEAYRIIKERALSIGTA 75 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + ID+ NI +AT A+ A+E+L+ + D + D A+ KGD SL Sbjct: 76 VVDSEVIDRINILQATRLAMKRALEDLKHPYDVVITDWVKLDVD---NCIAIPKGDERSL 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 A AS++AKV RD++M H+ YP Y F SH GYPT +H Q + + S IHR +FRP+ Sbjct: 133 CCACASVVAKVLRDKIMEHYHRLYPQYDFASHKGYPTKEHLQRLLQYRESPIHRKSFRPV 192 Query: 205 RNL 207 + L Sbjct: 193 KAL 195 >gi|221133301|ref|ZP_03559606.1| ribonuclease H [Glaciecola sp. HTCC2999] Length = 189 Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 78/180 (43%), Positives = 108/180 (60%), Gaps = 2/180 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP +NDSKK+S KKRE LY I A+ +I Sbjct: 3 IAGVDEVGRGPLVGDVVTAAVILDPARPIAALNDSKKLSEKKREALYPIIKEQALAWAIG 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A+ ID+ NI +AT+ A+ AV L + P +DG +P D + A++KGD Sbjct: 63 RATPAEIDELNILRATILAMTRAVAGLGIRPDFVQVDGNRLP-DWDYASEAIVKGDGSIA 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M + K +P+YGF H GYPT H ++ +R +F+P+ Sbjct: 122 CISAASILAKVVRDQEMVVLDKLHPEYGFAQHKGYPTKAHLACLEHLPILSCYRKSFKPV 181 >gi|110004283|emb|CAK98621.1| putative ribonuclease h II protein [Spiroplasma citri] Length = 207 Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 81/195 (41%), Positives = 117/195 (60%), Gaps = 3/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE E ++ N +AG DE GRG LAGP+VV+A+IL + + I DSKKI+ K+R +L Sbjct: 4 FEKEILISYPNTTILAGTDEAGRGCLAGPLVVSAVILPLDYVNDEIKDSKKITAKQRIKL 63 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++I S AI +I S ++ N +A++ + A++NL V L D + Sbjct: 64 ADEIMSIAISYTIEIISVAMFEELNPKQASIFGMQQAIDNLMVKSDIILTDAEKLGPSYN 123 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 QA +IKGDS+S SI AASI+AKVTRD LM + YP Y F ++ GY T KH +++ Sbjct: 124 HQA--IIKGDSLSQSIVAASILAKVTRDNLMLKFDQDYPQYDFKNNKGYGTKKHLLALQQ 181 Query: 191 KGPSCIHRLTFRPLR 205 G + +HR T+RP+R Sbjct: 182 FGITSLHRKTYRPVR 196 >gi|170750072|ref|YP_001756332.1| ribonuclease H [Methylobacterium radiotolerans JCM 2831] gi|170656594|gb|ACB25649.1| Ribonuclease H [Methylobacterium radiotolerans JCM 2831] Length = 232 Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 81/178 (45%), Positives = 110/178 (61%), Gaps = 7/178 (3%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G DEVGRGAL GPVVVAA+ DP IP ++DSK++ RE L I + A +++ Sbjct: 53 GCDEVGRGALCGPVVVAAVWFDPTAIPPDLLAALDDSKRVPEPVRERLAPLIRAHARVAV 112 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 ++ S ID+ NI ATLDA+ AV L + L+DGR LP +A VI GD + Sbjct: 113 AAGSRALIDRINIRGATLDAMARAVARLGLA-APVLVDGRDALPGLPGRA--VIGGDHLV 169 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AKV RD+LMR +++P YG++ +VGY TA H+ + + G S HRL+F Sbjct: 170 PQIAAASIVAKVLRDQLMRRLARRHPGYGWERNVGYGTAVHRAGLTQLGRSAHHRLSF 227 >gi|118444390|ref|YP_878279.1| ribonuclease HII [Clostridium novyi NT] gi|189043585|sp|A0Q0X7|RNH2_CLONN RecName: Full=Ribonuclease HII; Short=RNase HII gi|118134846|gb|ABK61890.1| ribonuclease H [Clostridium novyi NT] Length = 269 Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 89/207 (42%), Positives = 120/207 (57%), Gaps = 20/207 (9%) Query: 18 VREKNMWP-----------VAGIDEVGRGALAGPVVVAAIILDPN-----NIPFGINDSK 61 +R +NM+ +AG DEVGRG LAGP+V AA++LD + N+ INDSK Sbjct: 62 IRVRNMYEFDKKYIKSGTYLAGADEVGRGPLAGPIVAAAVVLDLDIINDENLILRINDSK 121 Query: 62 KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 KIS + REEL + I A+ SI S + ID+ I + + +V NL+V P L Sbjct: 122 KISFEVREELSKIIKERAVSYSIQEISSEEIDEKGIAWCNNEVLKRSVCNLKVDPDLVLS 181 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG I F V+KGD+ S SIA ASIIAKV RD LM KKYP+Y F+ ++GY Sbjct: 182 DGYKIKNCTINNEF-VVKGDAKSASIACASIIAKVYRDNLMIEYSKKYPEYMFNKNMGYG 240 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNL 207 T +H + IK+ G + IHR +F L+N+ Sbjct: 241 TKEHIEAIKKFGCTKIHRKSF--LKNI 265 >gi|253996523|ref|YP_003048587.1| Ribonuclease H [Methylotenera mobilis JLW8] gi|253983202|gb|ACT48060.1| Ribonuclease H [Methylotenera mobilis JLW8] Length = 199 Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 79/200 (39%), Positives = 120/200 (60%), Gaps = 20/200 (10%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII- 81 M + G+DE GRG LAG V AA+ILDP G+ DSKK+S KKR+ L +I + A+ Sbjct: 1 MQLICGVDEAGRGPLAGAVYAAAVILDPAKPIHGLADSKKLSEKKRDALALEIKTHALAW 60 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVE-------------NLQVIPRSALIDGRSIPE- 127 ++ ++ + ID NI +A+L A+ A+E N+Q++ + +DG P+ Sbjct: 61 GVAHSTVEEIDAINILQASLLAMQRAIESIQNSQAVQASLTNMQLLVQ---VDGNKCPKI 117 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LPC+A ++KGDS +I+AASI+AK RD + ++YP YGF H GYPTA H + Sbjct: 118 SLPCEA--IVKGDSKVQAISAASILAKTARDAALYELDQQYPMYGFAQHKGYPTAAHMAL 175 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 +++ G S +HR ++ P+R L Sbjct: 176 LRQHGVSPVHRRSYAPVRAL 195 >gi|237737692|ref|ZP_04568173.1| ribonuclease HII [Fusobacterium mortiferum ATCC 9817] gi|229419572|gb|EEO34619.1| ribonuclease HII [Fusobacterium mortiferum ATCC 9817] Length = 206 Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 81/181 (44%), Positives = 109/181 (60%), Gaps = 4/181 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISI 83 + G+DE GRG LAG VV AA+ L + INDSKK++ KKRE+L++ I + + I Sbjct: 16 EIIGVDEAGRGPLAGSVVAAAVKLKRYSEELQEINDSKKLTEKKREKLFDIIMENFEVGI 75 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS---ALIDGRSIPEDLPCQAFAVIKGD 140 AS Q ID+ NI AT A+ A+E L + L+DG + + +IKGD Sbjct: 76 GIASVQEIDELNILNATFLAMRRAIEELDKKTNTDVLVLVDGNFKIREYIGKQEPIIKGD 135 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + SLSIAAASIIAKVTRDR + KKYP+Y F+ H GY T H++ + + G + IHR T Sbjct: 136 AKSLSIAAASIIAKVTRDRQLVEEGKKYPEYHFEKHKGYGTKAHREALLQYGVTPIHRKT 195 Query: 201 F 201 F Sbjct: 196 F 196 >gi|297626589|ref|YP_003688352.1| ribonuclease HII [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922354|emb|CBL56926.1| Ribonuclease HII [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 211 Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 75/195 (38%), Positives = 113/195 (57%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREELY 72 E + PVAG DE GRGA AGP+V AA+IL DP + ++DSK ++ ++RE + Sbjct: 11 EQALAASGFGPVAGADEAGRGACAGPLVAAAVILSEDPQDHIEDLHDSKTLTARRRERAF 70 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I + A+ S+ D+ + +A L + A+ L P AL DG ++ LP Sbjct: 71 DQIKAHALSWSVVCVGPAECDRLGMQEADLQGLRRALLRLDPSPGFALTDGFAVA-GLPV 129 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + KGD + ++AASI+AKVTRDRLM A +++P YGF+ H GY T HQ+ ++ Sbjct: 130 PGLGMWKGDRVCACVSAASIVAKVTRDRLMVRAAQQFPVYGFEIHKGYATKLHQERLEAL 189 Query: 192 GPSCIHRLTFRPLRN 206 GPS IHR ++ +R Sbjct: 190 GPSAIHRRSYANVRR 204 >gi|329768911|ref|ZP_08260338.1| ribonuclease HII [Gemella sanguinis M325] gi|328836628|gb|EGF86286.1| ribonuclease HII [Gemella sanguinis M325] Length = 175 Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 73/167 (43%), Positives = 110/167 (65%), Gaps = 2/167 (1%) Query: 42 VVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKAT 100 + AA+IL ++ G+NDSKK+S KKREELY+KI + A+ +I +++ I+K+NI+ A Sbjct: 1 MAAAVILKKDSYFEGLNDSKKLSEKKREELYDKIRNEAVAYAICEVNNEEIEKYNIYNAA 60 Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160 A+ AVE L V P LID E+ P ++++KGD S+SIAAAS+IAKV RD L Sbjct: 61 RIAMQRAVEKLDVKPDFLLIDAMPF-ENYPIPNYSMVKGDEKSVSIAAASVIAKVYRDNL 119 Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 M+ KYP Y F+++ GY T KH + +++ G + IHR F P++++ Sbjct: 120 MKKYASKYPYYDFENNAGYGTKKHLEGLRKYGITPIHRRDFEPIKSM 166 >gi|313201207|ref|YP_004039865.1| ribonuclease h [Methylovorus sp. MP688] gi|312440523|gb|ADQ84629.1| Ribonuclease H [Methylovorus sp. MP688] Length = 188 Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 76/183 (41%), Positives = 114/183 (62%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 + G+DE GRG LAG V AA+IL+P G+ DSKK+S KKR+ L +I A+ +I+ Sbjct: 6 ICGVDEAGRGPLAGAVYAAAVILNPARPIPGLADSKKLSEKKRDALTLEIKQHALAWAIA 65 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 ++ + ID NI +A++ A+ AVE L + P L+DG P+ + A A++ GDS Sbjct: 66 HSTVEEIDSINILQASMLAMRRAVEQLGIQPHKLLVDGLHCPQ-VSMVAEAIVDGDSKVE 124 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AK RD+ + ++YP YGF H GYPTA H ++ E G S +HR ++ P+ Sbjct: 125 AISAASILAKTARDKELYALDQQYPHYGFAKHKGYPTAFHMAMLIEHGVSPVHRRSYAPV 184 Query: 205 RNL 207 + L Sbjct: 185 KKL 187 >gi|161870870|ref|YP_001600044.1| ribonuclease HII [Neisseria meningitidis 053442] gi|189043631|sp|A9M3R5|RNH2_NEIM0 RecName: Full=Ribonuclease HII; Short=RNase HII gi|161596423|gb|ABX74083.1| ribonuclease HII [Neisseria meningitidis 053442] Length = 194 Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 82/184 (44%), Positives = 109/184 (59%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L E I A Sbjct: 5 TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKEQAAAWYV 63 Query: 85 SA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +A + + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS Sbjct: 64 AAATPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLDIPAEAVVKGDSKI 123 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183 Query: 204 LRNL 207 +RNL Sbjct: 184 VRNL 187 >gi|254670416|emb|CBA05987.1| Ribonuclease HII [Neisseria meningitidis alpha153] Length = 194 Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 82/184 (44%), Positives = 110/184 (59%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L E I + A Sbjct: 5 TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKNQAAAWHV 63 Query: 85 SA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +A + + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS Sbjct: 64 AAATPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKI 123 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183 Query: 204 LRNL 207 +RNL Sbjct: 184 VRNL 187 >gi|300870469|ref|YP_003785340.1| ribonuclease HII [Brachyspira pilosicoli 95/1000] gi|300688168|gb|ADK30839.1| ribonuclease HII (RNase HII) [Brachyspira pilosicoli 95/1000] Length = 221 Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 84/188 (44%), Positives = 115/188 (61%), Gaps = 9/188 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAII--LDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 + GIDEVGRG+L G V A+I LD + I NDSKK++ KKREELY+ I A+ S Sbjct: 29 ICGIDEVGRGSLFGEVTACAVIMPLDDDIIKEA-NDSKKLTAKKREELYKIIIQKALSYS 87 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + S + IDK NI+ AT A+ AVE L + P LID I D + ++IKGD Sbjct: 88 VYSVAANTIDKINIYNATKLAMLKAVEGLSIKPDILLIDAMKI--DTEIKQESIIKGDLK 145 Query: 143 SLSIAAASIIAKVTRDRLMRI---AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 S SIA ASI+AKV+RD+ M I +K+Y Y + GY T +H + IK+ G S +HRL Sbjct: 146 SYSIACASIVAKVSRDKAMNILSEKNKEYDKYKISKNKGYGTKEHIEAIKKYGASDLHRL 205 Query: 200 TFRPLRNL 207 +F P++++ Sbjct: 206 SFEPIKSI 213 >gi|149926572|ref|ZP_01914833.1| Ribonuclease H [Limnobacter sp. MED105] gi|149824935|gb|EDM84149.1| Ribonuclease H [Limnobacter sp. MED105] Length = 218 Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 79/201 (39%), Positives = 122/201 (60%), Gaps = 9/201 (4%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E++A + ++ V G+DE GRG L GPVV A +L+ N G+ SK +S KKR+ L Sbjct: 9 EIQAYAEQHSL-QVIGVDEAGRGPLCGPVVAGAALLNQPNTIDGLACSKTLSAKKRDSLE 67 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVE----NLQVIPRSALI--DGRSI 125 I +A +++ A+ + ID+ NI +A+L A++ AV+ + P+ LI DG + Sbjct: 68 TAIRRNAKACAVAHATVEEIDRLNILQASLLAMWRAVDLVLDQTGLKPKQCLIAVDGNKL 127 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P+ P QA AV+KGD+ +I+AASI+AKV RD + ++P Y D H+GYPTA+H Sbjct: 128 PK-WPYQAIAVVKGDTKIPAISAASILAKVARDEWCKTHALQFPQYELDIHMGYPTARHM 186 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 ++ E G + +HR +FRP+R Sbjct: 187 ALLLEHGATQLHRKSFRPVRE 207 >gi|325133106|gb|EGC55778.1| ribonuclease HII [Neisseria meningitidis M6190] Length = 194 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/184 (44%), Positives = 110/184 (59%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L E I + A Sbjct: 5 TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKNQAAAWHV 63 Query: 85 SA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +A + + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS Sbjct: 64 AAATPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHLGIPAEAVVKGDSKI 123 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183 Query: 204 LRNL 207 +RNL Sbjct: 184 VRNL 187 >gi|56750670|ref|YP_171371.1| ribonuclease HII [Synechococcus elongatus PCC 6301] gi|81299688|ref|YP_399896.1| ribonuclease HII [Synechococcus elongatus PCC 7942] gi|81596478|sp|Q5N4B8|RNH2_SYNP6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|97189413|sp|Q31PW0|RNH2_SYNE7 RecName: Full=Ribonuclease HII; Short=RNase HII gi|56685629|dbj|BAD78851.1| ribonuclease HII [Synechococcus elongatus PCC 6301] gi|81168569|gb|ABB56909.1| RNase HII [Synechococcus elongatus PCC 7942] Length = 215 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/189 (43%), Positives = 111/189 (58%), Gaps = 6/189 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI-PF---GINDSKKISHKKREELYEKITSSAII 81 VAG+DEVGRG L GPVV AA+IL I P G+ DSK++S ++R++LY I A+ Sbjct: 21 VAGVDEVGRGCLFGPVVTAAVILPETAIAPLQQAGVTDSKRLSQRQRQQLYPLICEVALA 80 Query: 82 S-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 + AS I++ NI +AT A+ A+ L LIDG L VI+GD Sbjct: 81 TGWGLASVAEIERWNILQATFLAMRRAIAKLDRPISRCLIDGNQQVPQLTYPQTTVIQGD 140 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 ++IAAASI+AKV RDRL+ ++YP Y H GY TA+H+Q I + GP+ +HR+ Sbjct: 141 RHCITIAAASILAKVWRDRLIERLDERYPGYALGRHKGYGTAQHRQAILQLGPTPLHRIR 200 Query: 201 F-RPLRNLS 208 F R LR S Sbjct: 201 FLRSLRQPS 209 >gi|319950993|ref|ZP_08024863.1| ribonuclease HII [Dietzia cinnamea P4] gi|319435336|gb|EFV90586.1| ribonuclease HII [Dietzia cinnamea P4] Length = 235 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/198 (40%), Positives = 119/198 (60%), Gaps = 4/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKRE 69 LEA + + + PVAG+DE GRG+ AGP+VVAA +L P ++DSKK++ R+ Sbjct: 28 LALEAALTRRGLGPVAGVDEAGRGSCAGPLVVAACVLGDRLHPELADLDDSKKLTAAARD 87 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L++ + A +S+ ID IH+ ++ + AV L P L DG ++ + Sbjct: 88 RLHDAVLRRARAVSVVVIEPDRIDARGIHRCNIEGMRRAVAALDPRPGFVLTDGFAV-DG 146 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L CQ+ AVI GD++ SIAAAS++AKVTRDR+M +YP YGF +H GY T H + I Sbjct: 147 LGCQSTAVIGGDAVVASIAAASVLAKVTRDRIMVDLDSRYPGYGFAAHKGYSTTGHARAI 206 Query: 189 KEKGPSCIHRLTFRPLRN 206 ++ GPS IHR+++ +R Sbjct: 207 EQLGPSDIHRMSYANVRR 224 >gi|258511350|ref|YP_003184784.1| Ribonuclease H [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478076|gb|ACV58395.1| Ribonuclease H [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 216 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 77/185 (41%), Positives = 113/185 (61%), Gaps = 8/185 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI-I 81 AG+DEVGRG +AGPVV A+++L + + DSK++ RE L ++I + A+ + Sbjct: 21 AGVDEVGRGCIAGPVVAASVVLPLERETYEELKDVMDSKQLKPDVRERLADRIRAKALAV 80 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLPCQAFAVIKGD 140 I AS + ID+ NI +AT A+ +++ L + AL+DG R +P V+ GD Sbjct: 81 GIGMASPEEIDRLNILQATQLAMKRSLDALDIPVDLALVDGNRGFRHRVPV--LPVVDGD 138 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + SL +AAAS+IAKV RDRLM + +P YGF HVGY T H + ++ GPS +HRL+ Sbjct: 139 ARSLLVAAASVIAKVFRDRLMAKLDEGFPGYGFSEHVGYGTRAHLEALRRLGPSVVHRLS 198 Query: 201 FRPLR 205 F P+R Sbjct: 199 FAPVR 203 >gi|258406140|ref|YP_003198882.1| Ribonuclease H [Desulfohalobium retbaense DSM 5692] gi|257798367|gb|ACV69304.1| Ribonuclease H [Desulfohalobium retbaense DSM 5692] Length = 197 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/179 (43%), Positives = 107/179 (59%), Gaps = 4/179 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DE GRG LAGPVV AA+IL G+ DSK++S K+RE L I A+ ++ Sbjct: 7 VAGVDEAGRGCLAGPVVAAAVILPKTWDLPGMTDSKQLSAKRREVLAGAIKEQALYWALG 66 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLPCQAFAVIKGDSIS 143 ID NI ++T A+ A+E L +P IDG + +P LP ++ ++ GDS Sbjct: 67 VVWPPVIDTINILQSTKRAMLTAIERLGHVPDMVYIDGNQPVPTSLPQKS--IVGGDSSE 124 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RDR+M ++YP YGF H GY T H + ++ GPS +HRLTF+ Sbjct: 125 PCIAAASIVAKTFRDRVMVSLERRYPGYGFARHKGYGTRAHLEALRRLGPSRMHRLTFK 183 >gi|86142121|ref|ZP_01060645.1| ribonuclease HII [Leeuwenhoekiella blandensis MED217] gi|85831684|gb|EAQ50140.1| ribonuclease HII [Leeuwenhoekiella blandensis MED217] Length = 200 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 77/185 (41%), Positives = 108/185 (58%), Gaps = 1/185 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 +N+ GIDE GRG LAGPV AA+IL + + DSK ++HK RE L I A+ Sbjct: 8 QNILTECGIDEAGRGCLAGPVTAAAVILPQSFKNKILTDSKLLTHKSRELLRPVIEQEAL 67 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 I+ + ID+ NI A++ A++ A+E L+ P+ L+DG C +IKG Sbjct: 68 AFGIAHVFPEEIDEINILNASIKAMHLAIEKLKQQPQHILVDGNRFKPYKECSHECIIKG 127 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS LSIAAAS++AK RDR M H ++P Y + + GYPT +H+Q IKE G + HR Sbjct: 128 DSKFLSIAAASVLAKTERDRYMTDLHMQFPHYNWKKNKGYPTKEHRQAIKEFGITSHHRK 187 Query: 200 TFRPL 204 +F+ L Sbjct: 188 SFKQL 192 >gi|300783884|ref|YP_003764175.1| ribonuclease HII [Amycolatopsis mediterranei U32] gi|299793398|gb|ADJ43773.1| ribonuclease HII [Amycolatopsis mediterranei U32] Length = 280 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 75/201 (37%), Positives = 114/201 (56%), Gaps = 4/201 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKRE 69 + L+ + + + PVAG+DE G GA AGP+VVAA +L + + DSK ++ K R+ Sbjct: 8 WGLQGALDRRGLGPVAGVDEAGAGACAGPLVVAACVLKQGDAAKLIELTDSKMMTAKARD 67 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +Y+ + + A+ S+ + +D + I L+ + A L+V P L DG +P Sbjct: 68 RVYDLVLARAVDYSVIVIPTEEVDLYGIRVMNLEGMRRAAAALRVQPGYVLTDGFRVP-G 126 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L AVIKGD IAAAS++AKVTRDR+M H +P YGFD H GY T+ H + Sbjct: 127 LTAPNTAVIKGDRSVACIAAASVLAKVTRDRIMAGYHDDFPHYGFDVHKGYSTSDHLAAL 186 Query: 189 KEKGPSCIHRLTFRPLRNLSV 209 +E GPS +HR ++ + ++V Sbjct: 187 REHGPSDVHRWSYTNVATVAV 207 >gi|16803313|ref|NP_464798.1| ribonuclease HII [Listeria monocytogenes EGD-e] gi|47097416|ref|ZP_00234965.1| ribonuclease HII [Listeria monocytogenes str. 1/2a F6854] gi|254829970|ref|ZP_05234625.1| ribonuclease HII [Listeria monocytogenes 10403S] gi|254898562|ref|ZP_05258486.1| ribonuclease HII [Listeria monocytogenes J0161] gi|254911948|ref|ZP_05261960.1| ribonuclease HII [Listeria monocytogenes J2818] gi|254936274|ref|ZP_05267971.1| rnhB [Listeria monocytogenes F6900] gi|284801658|ref|YP_003413523.1| hypothetical protein LM5578_1411 [Listeria monocytogenes 08-5578] gi|284994800|ref|YP_003416568.1| hypothetical protein LM5923_1364 [Listeria monocytogenes 08-5923] gi|38258623|sp|Q8Y7K4|RNH2_LISMO RecName: Full=Ribonuclease HII; Short=RNase HII gi|16410689|emb|CAC99351.1| rnhB [Listeria monocytogenes EGD-e] gi|47014215|gb|EAL05199.1| ribonuclease HII [Listeria monocytogenes str. 1/2a F6854] gi|258608863|gb|EEW21471.1| rnhB [Listeria monocytogenes F6900] gi|284057220|gb|ADB68161.1| hypothetical protein LM5578_1411 [Listeria monocytogenes 08-5578] gi|284060267|gb|ADB71206.1| hypothetical protein LM5923_1364 [Listeria monocytogenes 08-5923] gi|293589909|gb|EFF98243.1| ribonuclease HII [Listeria monocytogenes J2818] Length = 261 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 118/182 (64%), Gaps = 3/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ L+EKI AI I + Sbjct: 73 IAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALFEKIKKEAIAIGVG 132 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 H ID+ NI++AT A+ A+ L P LID ++P ++IKGD+ S+ Sbjct: 133 IIEHDVIDQVNIYEATKLAMCEALNQLTPEPDFVLID--AMPLRYTEAELSLIKGDTKSI 190 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASIIAKVTRDRLM++ +KYP Y F +++GY T KH + G IHR++F P+ Sbjct: 191 SIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGTKKHLLGLDTIGICPIHRMSFSPV 250 Query: 205 RN 206 + Sbjct: 251 KE 252 >gi|187928381|ref|YP_001898868.1| ribonuclease HII [Ralstonia pickettii 12J] gi|238691815|sp|B2UBB5|RNH2_RALPJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|187725271|gb|ACD26436.1| Ribonuclease H [Ralstonia pickettii 12J] Length = 232 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/188 (41%), Positives = 114/188 (60%), Gaps = 11/188 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 + G+DE GRG LAGPV AA++L+P G+ DSK ++ +KRE LY++I A+ ++ Sbjct: 28 LCGVDEAGRGPLAGPVTAAAVVLNPRKPIKGLADSKILTARKREALYDEIVEKALAWHVA 87 Query: 85 SASHQYIDKHNIHKATLDAIYHAVEN---LQVIPRSALIDGRSIPEDLPCQAFAV---IK 138 A+ + ID+ NI AT+ A+ AV+ L +P +DG P+ AFAV +K Sbjct: 88 EATVEEIDRINILHATMLAMQRAVQGVAALGTLPDLVQVDGNRCPQ----VAFAVEAIVK 143 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD++ +I+AASI+AKVTRDR + H ++P YGFD H GY T +H I G + HR Sbjct: 144 GDALVPAISAASILAKVTRDRQLAALHIEFPLYGFDVHAGYGTPQHLAAIDLHGVTPHHR 203 Query: 199 LTFRPLRN 206 +F P+R Sbjct: 204 RSFAPVRR 211 >gi|160891452|ref|ZP_02072455.1| hypothetical protein BACUNI_03903 [Bacteroides uniformis ATCC 8492] gi|156858859|gb|EDO52290.1| hypothetical protein BACUNI_03903 [Bacteroides uniformis ATCC 8492] Length = 202 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/181 (44%), Positives = 108/181 (59%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPTDFKNELLNDSKQLTEKQRYTLREVIEKEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143 S + IDK NI A+ A++ AV+ L V P+ LIDG + DLP V+KGD Sbjct: 73 VSPEEIDKINILNASFLAMHRAVDQLNVRPQHLLIDGNRFKKYRDLPHTT--VVKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAASI+AK RD M H++YP Y ++ + GYPT KH+ I E+G + HRLTF Sbjct: 131 LSIAAASILAKTYRDDYMNRLHEEYPYYDWNRNKGYPTKKHRAAIAERGTTPYHRLTFNL 190 Query: 204 L 204 L Sbjct: 191 L 191 >gi|317478434|ref|ZP_07937595.1| ribonuclease HII [Bacteroides sp. 4_1_36] gi|316905393|gb|EFV27186.1| ribonuclease HII [Bacteroides sp. 4_1_36] Length = 202 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/181 (44%), Positives = 108/181 (59%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPTDFKNELLNDSKQLTEKQRYTLREVIEKEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143 S + IDK NI A+ A++ AV+ L V P+ LIDG + DLP V+KGD Sbjct: 73 VSPEEIDKINILNASFLAMHRAVDQLNVRPQHLLIDGNRFKKYRDLPHTT--VVKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAASI+AK RD M H++YP Y ++ + GYPT KH+ I E+G + HRLTF Sbjct: 131 LSIAAASILAKTYRDDYMNRLHEEYPYYDWNRNKGYPTKKHRAAIAERGTTPYHRLTFNL 190 Query: 204 L 204 L Sbjct: 191 L 191 >gi|126666166|ref|ZP_01737146.1| ribonuclease HII [Marinobacter sp. ELB17] gi|126629488|gb|EBA00106.1| ribonuclease HII [Marinobacter sp. ELB17] Length = 217 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/181 (44%), Positives = 110/181 (60%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+IL+P + DSKK+S KKR +L+++I A S+ Sbjct: 19 LAGVDEVGRGPLIGAVVTAAVILNPARPIKDLADSKKLSEKKRNQLFDEIIEKATAWSLG 78 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + ID+ NI +AT+ A+ AVE L P L+DG P D A AV+KGD Sbjct: 79 RCEAEEIDRLNIFQATMVAMTRAVEGLNPQPEYVLVDGNRCP-DWRWPAAAVVKGDMRIA 137 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKVTRDR ++ + YP YG H GYPT H + + G + HR +FRP+ Sbjct: 138 AISAASILAKVTRDRELQALDQLYPGYGLAQHKGYPTTAHMEALARLGVTPQHRRSFRPV 197 Query: 205 R 205 R Sbjct: 198 R 198 >gi|302344951|ref|YP_003813304.1| ribonuclease HII [Prevotella melaninogenica ATCC 25845] gi|302149166|gb|ADK95428.1| ribonuclease HII [Prevotella melaninogenica ATCC 25845] Length = 200 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/181 (43%), Positives = 111/181 (61%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL P+ +NDSKK++ KKR L E+I AI ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPPDYQNELLNDSKKLTAKKRYALREEIERDAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143 + + IDK NI A+ A++ A++ L+V P + ++DG +DLP ++KGD Sbjct: 73 VTPEEIDKINILNASFLAMHRALDQLKVRPEAVIVDGNRFKPYQDLPSTT--IVKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAASI+AK RD M ++YP Y + S++GYPT KH+Q I+E G + HR ++ Sbjct: 131 LSIAAASILAKTYRDDYMLSLAEEYPQYDWQSNMGYPTKKHRQAIREHGITPYHRKSYNL 190 Query: 204 L 204 L Sbjct: 191 L 191 >gi|284047854|ref|YP_003398193.1| Ribonuclease H [Acidaminococcus fermentans DSM 20731] gi|283952075|gb|ADB46878.1| Ribonuclease H [Acidaminococcus fermentans DSM 20731] Length = 270 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 86/200 (43%), Positives = 131/200 (65%), Gaps = 6/200 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREEL 71 +LE + M VAG DE GRG LAGP+V AA+IL P++I G+NDSKK++ +RE L Sbjct: 60 DLERAFWARGMDQVAGCDEAGRGPLAGPLVTAAVIL-PHSIWLPGLNDSKKVTAARREIL 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y +I A+ +++S + ID+ NI++A A+ + +L+V P++A+ D ++P ++P Sbjct: 119 YGEILEQAVSVTVSILGPREIDRLNIYQAAKTAMTLCLTHLKVRPQAAVTD--AMPLEIP 176 Query: 131 -CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + ++ GDS S ++AAASIIAKVTRD LM ++YP YGF H GY TA+H Q I Sbjct: 177 GMEVEDLVHGDSRSAAVAAASIIAKVTRDHLMEDMDRQYPQYGFAKHKGYGTARHIQAIL 236 Query: 190 EKGPSCIHRLTFRPLRNLSV 209 + GP+ HR +F PL+++ + Sbjct: 237 DCGPTPWHRRSFEPLKSMDL 256 >gi|150390501|ref|YP_001320550.1| ribonuclease H [Alkaliphilus metalliredigens QYMF] gi|189043609|sp|A6TRS3|RNH2_ALKMQ RecName: Full=Ribonuclease HII; Short=RNase HII gi|149950363|gb|ABR48891.1| Ribonuclease H [Alkaliphilus metalliredigens QYMF] Length = 204 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/198 (41%), Positives = 116/198 (58%), Gaps = 9/198 (4%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 E+E + E+ +AG DEVGRG L G V+ A +IL + G+ DSKK+S K+REE Sbjct: 3 RLEIENQLWEEGYESIAGCDEVGRGCLFGSVLAATVILPKGLLIEGVKDSKKLSPKRREE 62 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVI------PRSALIDGR 123 LYE I +AI + + S + ID+ NI +A+ A+ +V +L I P L+D Sbjct: 63 LYEVIKKNAIAMGVGIISAEVIDQINIRQASRLAMKKSVLSLTTIDGESKIPDYILVDAE 122 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +I D+ A+IKGD S IAAASI+AKV RDRL ++YP+YG H GY T Sbjct: 123 NI--DIAIPQSAIIKGDDRSQGIAAASIVAKVIRDRLCIRWDEEYPNYGIAQHKGYGTKL 180 Query: 184 HQQVIKEKGPSCIHRLTF 201 H++ + + GPS +HR +F Sbjct: 181 HREALLKYGPSELHRRSF 198 >gi|113474350|ref|YP_720411.1| ribonuclease HII [Trichodesmium erythraeum IMS101] gi|123352730|sp|Q118Y6|RNH2_TRIEI RecName: Full=Ribonuclease HII; Short=RNase HII gi|110165398|gb|ABG49938.1| RNase HII [Trichodesmium erythraeum IMS101] Length = 211 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 86/183 (46%), Positives = 109/183 (59%), Gaps = 7/183 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI-----PFGINDSKKISHKKREELYEKITSSAI- 80 AG+DEVGRGAL GPVV AA+IL P ++ G+ DSKK++ K+R L I + A Sbjct: 20 AGVDEVGRGALFGPVVAAAVIL-PEDVLDDLASTGVTDSKKLTEKRRCHLASLIRTVAWD 78 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I AS + ID+ NI KA+L A+ AV L++ P L+DG DL V+KGD Sbjct: 79 CQIGIASVREIDRLNILKASLLAMKRAVLRLKLRPDLVLVDGNQEIRDLFIPQRTVVKGD 138 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S L+IAAASI+AKV RD L+ KKYP Y + GY T KH+Q I G S HRL+ Sbjct: 139 SKCLAIAAASIVAKVWRDTLIMRLAKKYPVYDLTKNKGYGTKKHKQGIINYGVSPQHRLS 198 Query: 201 FRP 203 F P Sbjct: 199 FSP 201 >gi|218131835|ref|ZP_03460639.1| hypothetical protein BACEGG_03456 [Bacteroides eggerthii DSM 20697] gi|317474549|ref|ZP_07933823.1| ribonuclease HII [Bacteroides eggerthii 1_2_48FAA] gi|217986138|gb|EEC52477.1| hypothetical protein BACEGG_03456 [Bacteroides eggerthii DSM 20697] gi|316909230|gb|EFV30910.1| ribonuclease HII [Bacteroides eggerthii 1_2_48FAA] Length = 199 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 78/179 (43%), Positives = 106/179 (59%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NI A+ A++ AV+ LQ+ P+ LIDG + V+KGD LS Sbjct: 73 VSPEEIDKINILNASFLAMHRAVDRLQLRPQHLLIDGNRFKKYRELPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H++YP Y ++ + GYPT KH+ I E+G S HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPYYDWNHNKGYPTKKHRAAIAERGTSPYHRMTFNLL 191 >gi|294508407|ref|YP_003572465.1| Ribonuclease HII [Salinibacter ruber M8] gi|294344735|emb|CBH25513.1| Ribonuclease HII [Salinibacter ruber M8] Length = 200 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/196 (40%), Positives = 110/196 (56%), Gaps = 9/196 (4%) Query: 20 EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E+ +W VAG+DE GRG LAGPVV AA+I+ P I DSK +S +R + Sbjct: 5 ERRLWADGYERVAGLDEAGRGCLAGPVVAAAVIMPPQVEITAIQDSKALSEGQRLDARAT 64 Query: 75 ITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL---P 130 I A+ SI+ S ID NI +A L+A+ A + P L+DG +L P Sbjct: 65 IEDEAVAASIARCSPTEIDDCNILQAALEAMRRAASGCRPPPDFVLVDGNQWDRNLVDAP 124 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 V+KGD+ S SIAAASI+AK RD LMR H+ +P+Y + S+VGYPT +H ++E Sbjct: 125 WPHETVVKGDAKSQSIAAASILAKTERDALMRDLHEAHPEYDWASNVGYPTQQHYDALRE 184 Query: 191 KGPSCIHRLTFRPLRN 206 G + HR +F R+ Sbjct: 185 HGATPHHRQSFTLFRD 200 >gi|126655902|ref|ZP_01727341.1| Ribonuclease HII/HIII [Cyanothece sp. CCY0110] gi|126623381|gb|EAZ94086.1| Ribonuclease HII/HIII [Cyanothece sp. CCY0110] Length = 199 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/182 (43%), Positives = 111/182 (60%), Gaps = 5/182 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI- 80 +AG+DEVGRG L GPVV AA++L+ ++IP G+ DSKK+S K+RE L I + AI Sbjct: 13 IAGVDEVGRGCLFGPVVAAAVVLEKSSIPQLQEIGVKDSKKLSAKRRETLATAIKNRAIS 72 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 IS AS Q ID+ NI A+L A+ ++ L + P+ LIDG +L +I GD Sbjct: 73 YHISYASSQEIDRLNILNASLLAMKRSITKLSITPQLCLIDGNQKVPNLTIPQETIIGGD 132 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S IAAASI+AKV RD+L+ KYP Y +++ GY T KH+ +++ G HR + Sbjct: 133 KSSPLIAAASILAKVWRDQLIVRLAAKYPHYDLENNKGYGTKKHRLALQQYGLCFHHRRS 192 Query: 201 FR 202 F+ Sbjct: 193 FK 194 >gi|296116694|ref|ZP_06835304.1| ribonuclease HII [Gluconacetobacter hansenii ATCC 23769] gi|295976906|gb|EFG83674.1| ribonuclease HII [Gluconacetobacter hansenii ATCC 23769] Length = 235 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 78/188 (41%), Positives = 113/188 (60%), Gaps = 6/188 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISHKKREELYEKITS--SAI 80 VAG+DEVGRG LAGPVV AA++ P+++ ++DSKK+ R + ++ + S + Sbjct: 14 VAGVDEVGRGPLAGPVVAAAVMFMHGVPDDLASRLDDSKKLRPAARLRAFAELRALPSVL 73 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I +++AS I++HNI +A A+ AV L P L+DG + P D C V+ GD Sbjct: 74 IGVAAASVTEIERHNILRAAHIAMQRAVARLPQRPDLVLVDGNATP-DFGCATQCVVGGD 132 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S SLSIAAASI+AKV RDRLM ++P YG++ + GY TA H+ + G + HR Sbjct: 133 SKSLSIAAASIVAKVIRDRLMERLSVRWPGYGWERNAGYGTAAHRAALCAVGITPHHRAA 192 Query: 201 FRPLRNLS 208 F +R L+ Sbjct: 193 FGTVRALA 200 >gi|124267155|ref|YP_001021159.1| ribonuclease HII [Methylibium petroleiphilum PM1] gi|189043524|sp|A2SH85|RNH22_METPP RecName: Full=Ribonuclease HII 2; Short=RNase HII 2 gi|124259930|gb|ABM94924.1| RNase HII [Methylibium petroleiphilum PM1] Length = 217 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/183 (44%), Positives = 114/183 (62%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84 +AG+DE GRG LAGPVV AA+ILD G+ DSK +S + RE L+++I + A+ I+ Sbjct: 30 LAGVDEAGRGPLAGPVVAAAVILDDVQPIRGLGDSKVLSERVRERLFDEIRAKALCCCIA 89 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID NI +ATL A+ AV L++ P L+DG +P L A A++KGD+ Sbjct: 90 EASVEEIDTLNILQATLLAMRRAVAGLRLRPNKVLVDGNRLPV-LQVPAEAIVKGDAKVA 148 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKV RDRL H+ +P YGF H GYPT H ++ G HR +F P+ Sbjct: 149 AISAASILAKVHRDRLCLALHEAHPQYGFAGHKGYPTPDHLAALRVHGACGAHRRSFAPV 208 Query: 205 RNL 207 R + Sbjct: 209 REV 211 >gi|172038236|ref|YP_001804737.1| ribonuclease HII [Cyanothece sp. ATCC 51142] gi|171699690|gb|ACB52671.1| ribonuclease HII [Cyanothece sp. ATCC 51142] Length = 202 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/182 (43%), Positives = 108/182 (59%), Gaps = 5/182 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI- 80 +AG+DEVGRG L GPVV AA++ + I G+ DSK++S K+RE L +I + AI Sbjct: 19 MAGVDEVGRGCLFGPVVAAAVVFNFTTIAQLQDIGVKDSKQLSVKRRESLVTEIKNRAIS 78 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 IS AS Q ID+ NI A+L A+ ++ L V P LIDG DL +I GD Sbjct: 79 YQISYASSQEIDRLNILNASLLAMKRSITKLSVTPELCLIDGNQKIPDLTIAQETIIGGD 138 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S IAAASI+AKV RD+L+ KYP Y +++ GY T KH+ +++ GP HR + Sbjct: 139 RTSPIIAAASILAKVWRDQLIVRLAAKYPHYDLENNKGYGTKKHRMGLQQYGPCFHHRRS 198 Query: 201 FR 202 F+ Sbjct: 199 FK 200 >gi|219118288|ref|XP_002179922.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217408975|gb|EEC48908.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 189 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 91/192 (47%), Positives = 118/192 (61%), Gaps = 17/192 (8%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK-REELYEKITSS-----A 79 V G+DE GRG LAGPVV AA ++ P +I GI DSK ++ + REELYEKI SS A Sbjct: 3 VIGVDEAGRGPLAGPVVAAAAVV-PIDI-VGIADSKTLTRESVREELYEKIVSSDNVRWA 60 Query: 80 IISISSASHQYIDKHNIHKATLDAIY---HAVENLQVIPRSA---LIDGRSIPEDLPCQA 133 + I SA ID+ NI +ATL + AV + +P +A L+DG +P+ + + Sbjct: 61 VAVIDSAR---IDEVNILQATLQGMRLAASAVAGISEVPDNAFYALLDGNRLPKKMAMRV 117 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++KGDS SIAAASI+AKVTRDRLM K YP+Y H GYPTA H +++ G Sbjct: 118 ETMVKGDSREYSIAAASILAKVTRDRLMHGYDKLYPEYNLAQHKGYPTAAHMDAVRKYGA 177 Query: 194 SCIHRLTFRPLR 205 S IHR TF PL+ Sbjct: 178 SPIHRRTFAPLK 189 >gi|77919812|ref|YP_357627.1| ribonuclease HII [Pelobacter carbinolicus DSM 2380] gi|97189130|sp|Q3A2F0|RNH2_PELCD RecName: Full=Ribonuclease HII; Short=RNase HII gi|77545895|gb|ABA89457.1| RNase HII [Pelobacter carbinolicus DSM 2380] Length = 209 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 89/195 (45%), Positives = 120/195 (61%), Gaps = 4/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELY 72 E + + +AGIDE GRG LAGPVV AA++L P ++P G+NDSKKIS K RE+L+ Sbjct: 15 FEQRLSRQGYRRIAGIDEAGRGPLAGPVVAAAVVLPPVFDLP-GLNDSKKISAKLREKLF 73 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ I AS Q +D N+ +ATL A+ A++ L L+DG + P LP Sbjct: 74 PQIRRQALDYGIGLASAQEVDGLNVLQATLLAMRRALDRLAQPADYLLVDGIT-PVPLPL 132 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +GDS SLSIAAAS++AKV RDRLM ++P+YGF H GY +A H+ I Sbjct: 133 PQKTLKQGDSRSLSIAAASVLAKVVRDRLMTTYDARFPEYGFAGHKGYGSAAHRAAIARL 192 Query: 192 GPSCIHRLTFRPLRN 206 GP +HR TFR +R Sbjct: 193 GPCPLHRATFRGVRE 207 >gi|331703424|ref|YP_004400111.1| ribonuclease H II [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801979|emb|CBW54133.1| Ribonuclease H II [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 207 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/202 (37%), Positives = 122/202 (60%), Gaps = 2/202 (0%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 +R F+ + + + N+ ++G DE GRG LAGP+VVA++IL P+ I DSKK++ K Sbjct: 3 DRKLFD-DQIKLDHNITYLSGSDEAGRGCLAGPLVVASVILKPDYFNPLIKDSKKLNPKT 61 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R+ L+++I + + I S + +D+ N +A+L + NL++ P LIDG Sbjct: 62 RQILFDEIIKNCLDYQIIVISSKQVDELNPLQASLLGFKTTISNLKITPDLGLIDGNQNI 121 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + ++IKGD S SIA +SI+AKVTRD+++ + YP+YGF SH GY T +H Sbjct: 122 NLENIKTLSIIKGDDKSFSIACSSILAKVTRDKILDEYDQIYPNYGFKSHKGYCTKQHLL 181 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 I++ G IHR +++P++ +S Sbjct: 182 AIQKYGVLDIHRKSYKPIKKIS 203 >gi|269792962|ref|YP_003317866.1| Ribonuclease H [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100597|gb|ACZ19584.1| Ribonuclease H [Thermanaerovibrio acidaminovorans DSM 6589] Length = 188 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/182 (45%), Positives = 114/182 (62%), Gaps = 7/182 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI- 80 VAG+DE GRG LAGPVV AA +L + + G+ DSK +S ++RE L+E I S + Sbjct: 3 VAGVDEAGRGPLAGPVVAAAAVLTRDQARELMALGLKDSKALSPRRREALFEAIRSLNVQ 62 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-EDLPCQAFAVIKG 139 +AS ID+ ++ KA+L A+ AV L V P+ L+DG S+P E L V+KG Sbjct: 63 WRAQAASWGRIDRTHVLKASLWAMGMAVMALPVRPQLVLVDG-SVPIEGLRIPQRCVVKG 121 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS SI AAS+IAKV RDR+M + YP Y F SH GYPT +H++++ + GPS +HR Sbjct: 122 DSKVPSIMAASVIAKVLRDRVMLALDRLYPQYRFASHKGYPTEEHRRILSQLGPSPVHRR 181 Query: 200 TF 201 +F Sbjct: 182 SF 183 >gi|294668304|ref|ZP_06733408.1| hypothetical protein NEIELOOT_00217 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309758|gb|EFE51001.1| hypothetical protein NEIELOOT_00217 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 196 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/182 (45%), Positives = 108/182 (59%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL P+ G+ DSKK+S KKR+ L E+I A+ ++S Sbjct: 7 AGVDEAGRGPLVGSVFAAAVILPPDYDLAGLADSKKLSEKKRDALAEEIRRQAVGWCVAS 66 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A I + NI A + A+ AVE L V P+ IDG +PE L +A AV+KGD + Sbjct: 67 ADVAEIAELNILHAAMLAMRRAVEGLAVPPQKVWIDGNRVPEGLAVEAEAVVKGDDKIAA 126 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AK RD M ++YP YGF+ H GY TA H +K+ G HR F P+R Sbjct: 127 ISAASILAKTARDAEMYALAERYPQYGFEKHKGYGTATHLAALKQYGALPEHRAGFAPVR 186 Query: 206 NL 207 L Sbjct: 187 EL 188 >gi|114331990|ref|YP_748212.1| ribonuclease H [Nitrosomonas eutropha C91] gi|122313303|sp|Q0AEI5|RNH2_NITEC RecName: Full=Ribonuclease HII; Short=RNase HII gi|114309004|gb|ABI60247.1| RNase HII [Nitrosomonas eutropha C91] Length = 219 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 78/180 (43%), Positives = 110/180 (61%), Gaps = 3/180 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 + G+DE GRG LAGPV A ++LD + G+ DSK++S K+R L E+I A +I+ Sbjct: 34 IYGVDEAGRGPLAGPVYAACVVLDSCYVINGLADSKQLSEKRRASLAEQIKQHARAWAIA 93 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA-LIDGRSIPEDLPCQAFAVIKGDSIS 143 SAS + ID+ NI +A++ A+ AV L + + L+DG +P+ L + AVI+GDS+ Sbjct: 94 SASVEEIDRLNILQASMLAMRRAVIELMPVSNALILVDGTHVPQ-LDYEVQAVIRGDSLV 152 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AK RD M H+ YP YGFD H GYPT H I+ G + HR +F P Sbjct: 153 AEISAASILAKTARDAEMLRLHEIYPIYGFDRHKGYPTRVHLDAIRLHGITATHRKSFAP 212 >gi|254232994|ref|ZP_04926321.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium tuberculosis C] gi|124602053|gb|EAY61063.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium tuberculosis C] Length = 264 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/201 (40%), Positives = 116/201 (57%), Gaps = 10/201 (4%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE+ + + PVAG+DEVGRGA AGP+VVAA +L P I ++DSKK+S + RE+L Sbjct: 23 LESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDDSKKLSEQAREKL 82 Query: 72 YEKITSSAI----ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + I A+ + I SA +D+ +H A ++ + AV L V P L DG +P Sbjct: 83 FSLICRYAVAYHVVFIPSAE---VDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVP- 138 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP + VI GD+ + IAAAS++AKV+RDR+M +P YGF H GY T H + Sbjct: 139 GLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAHSRA 198 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 + GP HR +F +R ++ Sbjct: 199 LARLGPCPQHRYSFINVRRVA 219 >gi|78044826|ref|YP_360258.1| ribonuclease HII [Carboxydothermus hydrogenoformans Z-2901] gi|97182364|sp|Q3AC76|RNH2_CARHZ RecName: Full=Ribonuclease HII; Short=RNase HII gi|77996941|gb|ABB15840.1| ribonuclease HII [Carboxydothermus hydrogenoformans Z-2901] Length = 231 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 70/183 (38%), Positives = 114/183 (62%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG DE GRG +AGPVV A +++ P ++DSKK+S KKRE+L+E+I + S++ Sbjct: 40 VAGGDEAGRGPVAGPVVAAIVVIKPGIYIPEVDDSKKLSSKKREKLFEEIINLVTDWSVA 99 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 ID+ NI++AT A A+++L + P + ++D + + +++K D IS Sbjct: 100 VVGPDLIDRLNIYQATKFAFKAALDSLSIKPEALILDALKLT-GFSGKQVSMVKADEISF 158 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 ++A ASI+AKV RD++M K +P YGF + GY T +H++ ++ GPS IHR +F P+ Sbjct: 159 AVACASILAKVIRDKIMEQYDKDFPGYGFKKNKGYLTREHREALELLGPSPIHRKSFEPI 218 Query: 205 RNL 207 ++ Sbjct: 219 KSF 221 >gi|332799159|ref|YP_004460658.1| Ribonuclease H [Tepidanaerobacter sp. Re1] gi|332696894|gb|AEE91351.1| Ribonuclease H [Tepidanaerobacter sp. Re1] Length = 210 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 89/191 (46%), Positives = 116/191 (60%), Gaps = 2/191 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ E ++++ VAG+DE GRG LAGPVV AA+IL + + DSKKIS KKRE++ Sbjct: 14 YDRERKLKQEGFTLVAGVDEAGRGPLAGPVVAAAVILVLDTEILNLKDSKKISEKKREKV 73 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YE I A+ + YID HNI +TL A+ +AVE L V P L+D IP+ Sbjct: 74 YEDIKGKAVAYAYDVIDADYIDNHNILNSTLMAMKNAVEKLPVKPEYILVDALKIPDITI 133 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 Q F VI GD+I IAAASIIAKV RDR+MR YP+YGF + GY T +H I++ Sbjct: 134 PQEF-VIHGDNICACIAAASIIAKVERDRIMRKYDLVYPEYGFIKNKGYGTKEHIDSIRK 192 Query: 191 KGPSCIHRLTF 201 G IHR +F Sbjct: 193 HGICPIHRRSF 203 >gi|326382879|ref|ZP_08204569.1| ribonuclease HII [Gordonia neofelifaecis NRRL B-59395] gi|326198469|gb|EGD55653.1| ribonuclease HII [Gordonia neofelifaecis NRRL B-59395] Length = 219 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/199 (39%), Positives = 115/199 (57%), Gaps = 10/199 (5%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE + + + PVAG+DE GRGA AGP+VVAA +L + ++DSKK+S RE L Sbjct: 22 LEFTLARQGLGPVAGVDEAGRGACAGPLVVAACVLGAAQLKSLASLDDSKKLSEATRERL 81 Query: 72 YEKITSSAI----ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 Y + A+ ++I +A +D+ +H A ++ + AV L V P L DG +P Sbjct: 82 YTAVVRHAVSWNVVAIPAAE---VDRLGVHVANIEGMRRAVAGLSVRPGYVLSDGFQVP- 137 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP + VI GD+ + IAAAS++AKVTRDR+M + P Y F H GY TA H Sbjct: 138 GLPAPSLPVIGGDANAACIAAASVLAKVTRDRMMVALDAELPGYEFAVHKGYSTALHMAC 197 Query: 188 IKEKGPSCIHRLTFRPLRN 206 + +GPS HR+++R +R+ Sbjct: 198 LDARGPSVEHRMSYRNVRD 216 >gi|67459453|ref|YP_247077.1| ribonuclease HII [Rickettsia felis URRWXCal2] gi|73917830|sp|Q4UKL5|RNH2_RICFE RecName: Full=Ribonuclease HII; Short=RNase HII gi|67004986|gb|AAY61912.1| Ribonuclease HII [Rickettsia felis URRWXCal2] Length = 193 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 90/192 (46%), Positives = 122/192 (63%), Gaps = 7/192 (3%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 HFE ++ + + VAGIDE GRG LAGPVV +A+I+D NI GI DSKK+S KKRE Sbjct: 7 HFE-----KKYHNYIVAGIDEAGRGPLAGPVVASAVIIDNTNIIPGIKDSKKLSKKKREL 61 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 LYE+ITS+ + + + SH ID+ NI +AT A A NL + P L+DG +D Sbjct: 62 LYEQITSNYVWAAAIISHIEIDEINILEATKKACSIAAANLSLKPEIVLVDGNMPFKDK- 120 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + ++I GD++SLSIAAASI+AKVTRDRLM ++P Y + + GY T +H + I Sbjct: 121 -RFVSMINGDNLSLSIAAASIVAKVTRDRLMLDLSTEFPQYLWHKNSGYGTKEHIEAINM 179 Query: 191 KGPSCIHRLTFR 202 G S HR +F+ Sbjct: 180 HGLSPYHRRSFK 191 >gi|270295437|ref|ZP_06201638.1| ribonuclease HII [Bacteroides sp. D20] gi|270274684|gb|EFA20545.1| ribonuclease HII [Bacteroides sp. D20] Length = 202 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/181 (44%), Positives = 108/181 (59%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPTDFKNELLNDSKQLTEKQRYTLREVIEKEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143 S + IDK NI A+ A++ AV+ L V P+ LIDG + DLP V+KGD Sbjct: 73 ISPEEIDKINILNASFLAMHRAVDQLNVRPQHLLIDGNRFKKYRDLPHTT--VVKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAASI+AK RD M H++YP Y ++ + GYPT KH+ I E+G + HRLTF Sbjct: 131 LSIAAASILAKTYRDDYMNRLHEEYPYYDWNRNKGYPTKKHRAAIAERGTTPYHRLTFNL 190 Query: 204 L 204 L Sbjct: 191 L 191 >gi|254805764|ref|YP_003083985.1| Ribonuclease HII [Neisseria meningitidis alpha14] gi|254669306|emb|CBA08298.1| Ribonuclease HII [Neisseria meningitidis alpha14] Length = 194 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/184 (44%), Positives = 109/184 (59%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L E I A Sbjct: 5 TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDTLAEMIKDQAAAWHV 63 Query: 85 SA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +A + + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS Sbjct: 64 AAATPEEIASLNILHATMLAMKRAVDGLVVHPEKIFIDGNRIPEHLGIPAEAVVKGDSKI 123 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183 Query: 204 LRNL 207 +RNL Sbjct: 184 VRNL 187 >gi|111023503|ref|YP_706475.1| ribonuclease HII [Rhodococcus jostii RHA1] gi|122955111|sp|Q0S2B9|RNH2_RHOSR RecName: Full=Ribonuclease HII; Short=RNase HII gi|110823033|gb|ABG98317.1| ribonuclease H [Rhodococcus jostii RHA1] Length = 226 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/191 (39%), Positives = 113/191 (59%), Gaps = 4/191 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREEL 71 +E+ + + PVAG+DE GRGA AGP+VVAA +L P P ++DSKK++ + REEL Sbjct: 19 MESALVRSGLGPVAGVDEAGRGACAGPLVVAACVLAPKPYPALARLDDSKKLTERTREEL 78 Query: 72 YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + IT A+ S+ S + +D+ +H A ++ + AV L P L DG +P LP Sbjct: 79 FPAITRLAVAWSVVSFPAEEVDRMGVHVANIEGMRRAVAGLSTTPGYVLTDGFRVP-GLP 137 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+ + IAAAS++AKV+RDR+M + +P YGF H GY T H +++ Sbjct: 138 APSLPVIGGDAAAACIAAASVLAKVSRDRVMVAMDETHPGYGFAIHKGYNTPAHLTALEK 197 Query: 191 KGPSCIHRLTF 201 GP HR ++ Sbjct: 198 LGPCPEHRRSW 208 >gi|323339885|ref|ZP_08080154.1| ribonuclease HII [Lactobacillus ruminis ATCC 25644] gi|323092758|gb|EFZ35361.1| ribonuclease HII [Lactobacillus ruminis ATCC 25644] Length = 256 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/182 (44%), Positives = 117/182 (64%), Gaps = 3/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 V GIDEVGRG LAGPV+ +IL + +NDSK+++ +KRE+LY I AI + I Sbjct: 73 VGGIDEVGRGPLAGPVIACCVILPHDFDLIDVNDSKQLTAEKREKLYGLILERAIDVGIG 132 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 ++ ID+ NI++A A+ AVE+L++ P LID I D+P + +IKGD+ S Sbjct: 133 CVDNRMIDRINIYEAARVAMKQAVESLRIKPEQLLIDAMQIETDIPQKK--LIKGDAKSA 190 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SI+AASI+AKV RD LM+ + YP YGF + GY T +H +++ GP IHR+TF P+ Sbjct: 191 SISAASIVAKVNRDHLMQFYDRIYPGYGFSKNDGYGTKEHLAGLEKLGPCPIHRMTFEPI 250 Query: 205 RN 206 ++ Sbjct: 251 KS 252 >gi|296139349|ref|YP_003646592.1| ribonuclease H [Tsukamurella paurometabola DSM 20162] gi|296027483|gb|ADG78253.1| Ribonuclease H [Tsukamurella paurometabola DSM 20162] Length = 228 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 83/196 (42%), Positives = 115/196 (58%), Gaps = 6/196 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI---NDSKKISHKKREE 70 +E+++ + PVAGIDE GRGA AGP+ VAA IL P IP + +DSKK+S RE Sbjct: 20 MESVLGRAGLGPVAGIDEAGRGACAGPMTVAACIL-PRKIPPSLARLDDSKKLSEIARER 78 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY +I A+ S+ + +D+ +H A + + A+ LQV P LIDG ++P L Sbjct: 79 LYPEILKHAVSWSVVTIPAAEVDRLGVHVANISGMRRAIATLQVTPGYVLIDGFTVP-GL 137 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + VI GD+ + IAAAS++AKVTRDR+M Y YGF H GY TA H + Sbjct: 138 GIPSLPVIGGDASASCIAAASVLAKVTRDRVMAELDADYDGYGFAVHKGYSTAAHMAALG 197 Query: 190 EKGPSCIHRLTFRPLR 205 E GPS HR+ ++ +R Sbjct: 198 ELGPSDQHRMRYQNVR 213 >gi|138894726|ref|YP_001125179.1| ribonuclease HII [Geobacillus thermodenitrificans NG80-2] gi|196247655|ref|ZP_03146357.1| Ribonuclease H [Geobacillus sp. G11MC16] gi|166225189|sp|A4IM80|RNH2_GEOTN RecName: Full=Ribonuclease HII; Short=RNase HII gi|134266239|gb|ABO66434.1| Ribonuclease HII [Geobacillus thermodenitrificans NG80-2] gi|196212439|gb|EDY07196.1| Ribonuclease H [Geobacillus sp. G11MC16] Length = 259 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 85/182 (46%), Positives = 113/182 (62%), Gaps = 3/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AGIDE GRG LAGPVV AA+IL + G++DSK+++ KRE L+ +I A+ I + Sbjct: 74 IAGIDEAGRGPLAGPVVAAAVILPKDAYLPGLDDSKRLTPAKREALFAQIEECAVAIGVG 133 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S ID+ NI++AT A+ AV L P L+D ++P LP Q IKGD+ S Sbjct: 134 IVSAAEIDEWNIYEATKQAMAKAVAALSPSPEHLLVDAMTVPCALPQQRL--IKGDANSA 191 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASIIAKVTRDR M ++YP YGF H+GY T +H I+ G + HR +F P+ Sbjct: 192 SIAAASIIAKVTRDRWMHELDRRYPQYGFARHMGYGTPEHLAAIRRYGVTDEHRRSFAPV 251 Query: 205 RN 206 R Sbjct: 252 RE 253 >gi|325139084|gb|EGC61630.1| ribonuclease HII [Neisseria meningitidis ES14902] Length = 194 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/184 (44%), Positives = 109/184 (59%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 AG+DE GRG G V AA+IL + ++P G+ DSKK+S KKR+ L E I + A Sbjct: 5 TAGVDEAGRGPFVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKNQAAAWHV 63 Query: 85 SA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +A + + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS Sbjct: 64 AAATPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHLGIPAEAVVKGDSKI 123 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183 Query: 204 LRNL 207 +RNL Sbjct: 184 VRNL 187 >gi|46907500|ref|YP_013889.1| ribonuclease HII [Listeria monocytogenes serotype 4b str. F2365] gi|226223876|ref|YP_002757983.1| ribonuclease H rnh [Listeria monocytogenes Clip81459] gi|254824666|ref|ZP_05229667.1| ribonuclease HII [Listeria monocytogenes FSL J1-194] gi|254852673|ref|ZP_05242021.1| ribonuclease HII [Listeria monocytogenes FSL R2-503] gi|254932410|ref|ZP_05265769.1| rnhB [Listeria monocytogenes HPB2262] gi|255520255|ref|ZP_05387492.1| ribonuclease HII [Listeria monocytogenes FSL J1-175] gi|300765309|ref|ZP_07075293.1| ribonuclease HII [Listeria monocytogenes FSL N1-017] gi|67461454|sp|Q720E8|RNH2_LISMF RecName: Full=Ribonuclease HII; Short=RNase HII gi|259494069|sp|C1L2I1|RNH2_LISMC RecName: Full=Ribonuclease HII; Short=RNase HII gi|46880768|gb|AAT04066.1| ribonuclease HII [Listeria monocytogenes serotype 4b str. F2365] gi|225876338|emb|CAS05047.1| Putative ribonuclease H rnh [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605991|gb|EEW18599.1| ribonuclease HII [Listeria monocytogenes FSL R2-503] gi|293583967|gb|EFF95999.1| rnhB [Listeria monocytogenes HPB2262] gi|293593905|gb|EFG01666.1| ribonuclease HII [Listeria monocytogenes FSL J1-194] gi|300513992|gb|EFK41055.1| ribonuclease HII [Listeria monocytogenes FSL N1-017] gi|328468563|gb|EGF39563.1| ribonuclease HII [Listeria monocytogenes 1816] gi|328475117|gb|EGF45901.1| ribonuclease HII [Listeria monocytogenes 220] gi|332311718|gb|EGJ24813.1| Ribonuclease HII [Listeria monocytogenes str. Scott A] Length = 261 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 89/204 (43%), Positives = 126/204 (61%), Gaps = 5/204 (2%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 N + E +E + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK++ Sbjct: 53 NKLEEMKQYETDLF--QQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQL 110 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S KR+ L+E I AI I + H ID+ NI++AT A+ A++ L P LID Sbjct: 111 SEAKRDALFETIKKEAIAIGVGIIEHDVIDQVNIYEATKLAMREALDQLTPEPDFVLID- 169 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 ++P ++IKGD+ S+SIAAASIIAKVTRDRLM++ +KYP Y F +++GY T Sbjct: 170 -AMPLRYTEAELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGTK 228 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRN 206 KH + G IHR++F P++ Sbjct: 229 KHLLGLDTIGICPIHRISFAPVKE 252 >gi|254828636|ref|ZP_05233323.1| rnhB [Listeria monocytogenes FSL N3-165] gi|258601035|gb|EEW14360.1| rnhB [Listeria monocytogenes FSL N3-165] Length = 261 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 117/182 (64%), Gaps = 3/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ L+EKI AI I + Sbjct: 73 IAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALFEKIKKEAIAIGVG 132 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 H ID+ NI++AT A+ A+ L P LID ++P ++IKGD+ S+ Sbjct: 133 IIEHDVIDQVNIYEATKLAMCEALNQLTPEPDFVLID--AMPLRYTEAELSLIKGDTKSI 190 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASIIAKVTRDRLM + +KYP Y F +++GY T KH + G IHR++F P+ Sbjct: 191 SIAAASIIAKVTRDRLMLMYDEKYPGYDFANNMGYGTKKHLLGLDTIGICPIHRMSFSPV 250 Query: 205 RN 206 + Sbjct: 251 KE 252 >gi|194332870|ref|YP_002014730.1| ribonuclease HII [Prosthecochloris aestuarii DSM 271] gi|194310688|gb|ACF45083.1| Ribonuclease H [Prosthecochloris aestuarii DSM 271] Length = 206 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 86/198 (43%), Positives = 116/198 (58%), Gaps = 10/198 (5%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKKREEL 71 E+ WP V GIDE GRG LAGPVV AA++ + P G +NDSK I ++R+EL Sbjct: 8 EQQFWPDLQRVCGIDEAGRGPLAGPVVAAAVVFPRHFRPHGFISTLNDSKTIPPRRRKEL 67 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A +I+ H ID+ NI +AT+ A+ +A +L+ P LIDG P Sbjct: 68 AQAIIQEAEDYAIAEVDHIEIDRINILQATMLAMNNAAGSLEHSPSLLLIDGNRFHPARP 127 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++KGD+ SIAAASI+AK RD +M A YP+YGF+ H GYPT +H + I+ Sbjct: 128 VAFRTIVKGDASVFSIAAASILAKTHRDAIMTEAALLYPEYGFEKHFGYPTREHIEAIRN 187 Query: 191 KGPSCIHRLTFRPLRNLS 208 G S IHR++FR LR L Sbjct: 188 HGRSPIHRMSFR-LRQLG 204 >gi|300933906|ref|ZP_07149162.1| ribonuclease HII [Corynebacterium resistens DSM 45100] Length = 212 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 79/196 (40%), Positives = 108/196 (55%), Gaps = 10/196 (5%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKRE 69 ++EA + + PVAG+DE GRGA GP+ +AA IL +IP + DSKK++ K+RE Sbjct: 1 MDMEAQLVAAGLGPVAGVDEAGRGACCGPISIAACILPEGDIPELARLTDSKKLTEKRRE 60 Query: 70 ELY----EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 EL+ E S AII IS+ + IDK I A + + AV NL + P L D + Sbjct: 61 ELFGVIQEVANSYAIIHISA---EEIDKLGIQHANVSGMRRAVANLDIEPGYVLTDAVQV 117 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P L V+KGD + I+AAS++AKV+RDR MR +YP YG H GY T H Sbjct: 118 P-GLAQPHLPVVKGDLMVRCISAASVLAKVSRDRFMRELDHEYPGYGLAGHKGYGTKAHM 176 Query: 186 QVIKEKGPSCIHRLTF 201 + G + HR T+ Sbjct: 177 DAVSLHGATPYHRYTY 192 >gi|45644754|gb|AAS73142.1| predicted ribonuclease H [uncultured marine gamma proteobacterium EBAC20E09] Length = 180 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 85/177 (48%), Positives = 107/177 (60%), Gaps = 5/177 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 +AG DEVGRG LAGPVV AA+IL +IP G+ DSKKIS KKRE L + I + + Sbjct: 2 IAGTDEVGRGCLAGPVVAAAVIL-KEDIP-GLTDSKKISPKKREFLADLILEKSFFAYGV 59 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSISL 144 S+ IDK NI A+L A+ A+ NL V P L+DG P+ D+P +A +I GDS Sbjct: 60 VSNNKIDKINILNASLLAMKRAILNLPVRPSMVLVDGTFKPDLDIPMRA--IIGGDSSEN 117 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +I+AASIIAKV RD LM +P Y + GY T KH + +K G IHR TF Sbjct: 118 AISAASIIAKVYRDNLMIKYDSIFPVYDLKGNKGYGTKKHLEALKSFGHCEIHRTTF 174 >gi|312865274|ref|ZP_07725502.1| ribonuclease HII [Streptococcus downei F0415] gi|311099385|gb|EFQ57601.1| ribonuclease HII [Streptococcus downei F0415] Length = 255 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 91/201 (45%), Positives = 127/201 (63%), Gaps = 9/201 (4%) Query: 14 LEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LEAM+ EK ++ +AGIDEVGRG LAGPVV AA+IL + G+NDSKKI K+ Sbjct: 54 LEAMLAYEKALYADGLELIAGIDEVGRGPLAGPVVAAAVILPKDCKIKGLNDSKKIPKKR 113 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 +Y ++ A+ + I S++ ID NI++AT A+ AV L + P+ LID + Sbjct: 114 HGLIYNQVMDQALAVGIGLKSNEVIDHVNIYEATKLAMLEAVGQLALRPQHLLIDAMDL- 172 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 DL ++IKGD+ SLSIAAASI+AKVTRDRLM +K+P Y F + GY T H + Sbjct: 173 -DLEIPQTSIIKGDASSLSIAAASIVAKVTRDRLMADYDEKFPGYDFSHNAGYGTKSHLE 231 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 +K+ G S IHR +F P++++ Sbjct: 232 GLKKWGVSPIHRRSFEPVKSM 252 >gi|294789420|ref|ZP_06754657.1| ribonuclease HII [Simonsiella muelleri ATCC 29453] gi|294482633|gb|EFG30323.1| ribonuclease HII [Simonsiella muelleri ATCC 29453] Length = 201 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/182 (44%), Positives = 105/182 (57%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85 AG+DE GRG L G V AA+IL + + DSKK+S KKR++L E I + AI SI+S Sbjct: 11 AGVDEAGRGPLVGSVFAAAVILPAHYDLPDLTDSKKLSEKKRDKLAELIKNQAIAWSIAS 70 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS I ++NI AT+ A+ AV L P IDG +P +L A AV+KGDS Sbjct: 71 ASPAEIVQYNILYATMLAMKRAVLGLNQKPEKVWIDGNRVPPELGIDAQAVVKGDSKIAQ 130 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AK RD M YP YGF+ H GY TA H +++ G HR F P++ Sbjct: 131 ISAASILAKTARDAEMYALATLYPQYGFEKHKGYGTAAHLAALRQYGVLPEHRADFSPVK 190 Query: 206 NL 207 L Sbjct: 191 AL 192 >gi|15610039|ref|NP_217418.1| ribonuclease HII [Mycobacterium tuberculosis H37Rv] gi|15842445|ref|NP_337482.1| ribonuclease HII [Mycobacterium tuberculosis CDC1551] gi|121638783|ref|YP_979007.1| ribonuclease HII [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662746|ref|YP_001284269.1| ribonuclease HII [Mycobacterium tuberculosis H37Ra] gi|148824091|ref|YP_001288845.1| ribonuclease HII [Mycobacterium tuberculosis F11] gi|167969531|ref|ZP_02551808.1| ribonuclease HII [Mycobacterium tuberculosis H37Ra] gi|215404876|ref|ZP_03417057.1| ribonuclease HII [Mycobacterium tuberculosis 02_1987] gi|215412745|ref|ZP_03421457.1| ribonuclease HII [Mycobacterium tuberculosis 94_M4241A] gi|215428343|ref|ZP_03426262.1| ribonuclease HII [Mycobacterium tuberculosis T92] gi|215431850|ref|ZP_03429769.1| ribonuclease HII [Mycobacterium tuberculosis EAS054] gi|215447164|ref|ZP_03433916.1| ribonuclease HII [Mycobacterium tuberculosis T85] gi|218754655|ref|ZP_03533451.1| ribonuclease HII [Mycobacterium tuberculosis GM 1503] gi|219558926|ref|ZP_03538002.1| ribonuclease HII [Mycobacterium tuberculosis T17] gi|224991275|ref|YP_002645964.1| ribonuclease HII [Mycobacterium bovis BCG str. Tokyo 172] gi|253798010|ref|YP_003031011.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis KZN 1435] gi|254365542|ref|ZP_04981587.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium tuberculosis str. Haarlem] gi|254551974|ref|ZP_05142421.1| ribonuclease HII [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187921|ref|ZP_05765395.1| ribonuclease HII [Mycobacterium tuberculosis CPHL_A] gi|260202037|ref|ZP_05769528.1| ribonuclease HII [Mycobacterium tuberculosis T46] gi|260206220|ref|ZP_05773711.1| ribonuclease HII [Mycobacterium tuberculosis K85] gi|289444457|ref|ZP_06434201.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T46] gi|289448567|ref|ZP_06438311.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis CPHL_A] gi|289553309|ref|ZP_06442519.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis KZN 605] gi|289571090|ref|ZP_06451317.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T17] gi|289575607|ref|ZP_06455834.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis K85] gi|289746701|ref|ZP_06506079.1| ribonuclease HII [Mycobacterium tuberculosis 02_1987] gi|289751567|ref|ZP_06510945.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T92] gi|289755014|ref|ZP_06514392.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis EAS054] gi|289759022|ref|ZP_06518400.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T85] gi|289763078|ref|ZP_06522456.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium tuberculosis GM 1503] gi|294994002|ref|ZP_06799693.1| ribonuclease HII [Mycobacterium tuberculosis 210] gi|297635520|ref|ZP_06953300.1| ribonuclease HII [Mycobacterium tuberculosis KZN 4207] gi|297732519|ref|ZP_06961637.1| ribonuclease HII [Mycobacterium tuberculosis KZN R506] gi|298526371|ref|ZP_07013780.1| ribonuclease HII [Mycobacterium tuberculosis 94_M4241A] gi|306777190|ref|ZP_07415527.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu001] gi|306781097|ref|ZP_07419434.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu002] gi|306785737|ref|ZP_07424059.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu003] gi|306789776|ref|ZP_07428098.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu004] gi|306794590|ref|ZP_07432892.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu005] gi|306798833|ref|ZP_07437135.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu006] gi|306804679|ref|ZP_07441347.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu008] gi|306808871|ref|ZP_07445539.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu007] gi|306968970|ref|ZP_07481631.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu009] gi|306973307|ref|ZP_07485968.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu010] gi|307081015|ref|ZP_07490185.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu011] gi|307085614|ref|ZP_07494727.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu012] gi|313659851|ref|ZP_07816731.1| ribonuclease HII [Mycobacterium tuberculosis KZN V2475] gi|1710612|sp|Q10793|RNH2_MYCTU RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226625|sp|A1KMP6|RNH2_MYCBP RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226629|sp|A5U6Q7|RNH2_MYCTA RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807981|sp|C1AG17|RNH2_MYCBT RecName: Full=Ribonuclease HII; Short=RNase HII gi|1403423|emb|CAA98340.1| PROBABLE RIBONUCLEASE HII PROTEIN RNHB (RNASE HII) [Mycobacterium tuberculosis H37Rv] gi|13882748|gb|AAK47296.1| ribonuclease HII [Mycobacterium tuberculosis CDC1551] gi|121494431|emb|CAL72912.1| Probable ribonuclease HII protein rnhB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134151055|gb|EBA43100.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium tuberculosis str. Haarlem] gi|148506898|gb|ABQ74707.1| ribonuclease HII [Mycobacterium tuberculosis H37Ra] gi|148722618|gb|ABR07243.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium tuberculosis F11] gi|224774390|dbj|BAH27196.1| ribonuclease HII [Mycobacterium bovis BCG str. Tokyo 172] gi|253319513|gb|ACT24116.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis KZN 1435] gi|289417376|gb|EFD14616.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T46] gi|289421525|gb|EFD18726.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis CPHL_A] gi|289437941|gb|EFD20434.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis KZN 605] gi|289540038|gb|EFD44616.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis K85] gi|289544844|gb|EFD48492.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T17] gi|289687229|gb|EFD54717.1| ribonuclease HII [Mycobacterium tuberculosis 02_1987] gi|289692154|gb|EFD59583.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T92] gi|289695601|gb|EFD63030.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis EAS054] gi|289710584|gb|EFD74600.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium tuberculosis GM 1503] gi|289714586|gb|EFD78598.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T85] gi|298496165|gb|EFI31459.1| ribonuclease HII [Mycobacterium tuberculosis 94_M4241A] gi|308214472|gb|EFO73871.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu001] gi|308326083|gb|EFP14934.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu002] gi|308329647|gb|EFP18498.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu003] gi|308333786|gb|EFP22637.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu004] gi|308337180|gb|EFP26031.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu005] gi|308340911|gb|EFP29762.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu006] gi|308344823|gb|EFP33674.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu007] gi|308348771|gb|EFP37622.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu008] gi|308353472|gb|EFP42323.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu009] gi|308357337|gb|EFP46188.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu010] gi|308361221|gb|EFP50072.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu011] gi|308364841|gb|EFP53692.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu012] gi|323718512|gb|EGB27683.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis CDC1551A] gi|326904516|gb|EGE51449.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis W-148] gi|328457784|gb|AEB03207.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis KZN 4207] Length = 264 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/201 (40%), Positives = 116/201 (57%), Gaps = 10/201 (4%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE+ + + PVAG+DEVGRGA AGP+VVAA +L P I ++DSKK+S + RE+L Sbjct: 23 LESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDDSKKLSEQAREKL 82 Query: 72 YEKITSSAI----ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + I A+ + I SA +D+ +H A ++ + AV L V P L DG +P Sbjct: 83 FPLICRYAVAYHVVFIPSAE---VDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVP- 138 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP + VI GD+ + IAAAS++AKV+RDR+M +P YGF H GY T H + Sbjct: 139 GLPMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAHSRA 198 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 + GP HR +F +R ++ Sbjct: 199 LARLGPCPQHRYSFINVRRVA 219 >gi|238650442|ref|YP_002916294.1| ribonuclease HII [Rickettsia peacockii str. Rustic] gi|238624540|gb|ACR47246.1| ribonuclease HII [Rickettsia peacockii str. Rustic] Length = 188 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 87/177 (49%), Positives = 113/177 (63%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 VAGIDE GRG LAGPVV + +I+D NI GI DSKK+S KKRE LYE+ITS+ + + + Sbjct: 12 VAGIDEAGRGPLAGPVVASTVIVDNANIITGIKDSKKLSKKKRELLYEQITSNYVWATAI 71 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 SH ID NI +AT A AV NL + P L+DG +D + ++I GD++SLS Sbjct: 72 ISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKDE--RFVSIINGDNLSLS 129 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AKVTRDRLM ++P Y + + GY +H + I G S HR +FR Sbjct: 130 IAAASIVAKVTRDRLMLDLSAEFPQYLWHKNSGYGIKEHIEAINIHGLSPYHRRSFR 186 >gi|94267010|ref|ZP_01290655.1| Ribonuclease H [delta proteobacterium MLMS-1] gi|93452284|gb|EAT02925.1| Ribonuclease H [delta proteobacterium MLMS-1] Length = 236 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 88/196 (44%), Positives = 122/196 (62%), Gaps = 11/196 (5%) Query: 20 EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E+++W VAG DE GRG LAGPVV A ++L P + DSK++S +R EL + Sbjct: 22 ERSLWAQGYRLVAGTDEAGRGPLAGPVVAACVVL-PVDCRSPFQDSKQLSASRRRELEAE 80 Query: 75 ITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPEDLPC 131 + + A + + AS ID NI +A+L A+ AV LQ P L+DG+ +IP +LP Sbjct: 81 LNALPGAAVGVGIASVAEIDGLNILQASLLAMRKAVTALQPAPDFLLVDGKFTIPLELPQ 140 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 QA +IKGDS S SIAAASI+AK RD+LM H++YP Y F H GY TA+H++++ Sbjct: 141 QA--LIKGDSRSASIAAASIVAKERRDQLMADLHRQYPQYNFIQHKGYATAEHRRLLHRF 198 Query: 192 GPSCIHRLTFRPLRNL 207 GP HR +F+P+R L Sbjct: 199 GPCPEHRRSFKPVREL 214 >gi|291543926|emb|CBL17035.1| RNase HII [Ruminococcus sp. 18P13] Length = 205 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 88/200 (44%), Positives = 128/200 (64%), Gaps = 9/200 (4%) Query: 12 FELEAMVREKNMWPV-AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 FE + VR N +PV G+DE GRG LAG V AA++L P+ + G++DSKK++ K+RE Sbjct: 12 FEYDEAVR--NSYPVFCGVDEAGRGPLAGDVYAAAVVLPPDVVIPGLDDSKKLTEKRREA 69 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-D 128 LY++I + A I++A+ + I++ NI +A + A+ AV L + + LIDG +P + Sbjct: 70 LYDEIIAKASACCIAAATVEEIEQLNILQAAMLAMTRAVSGLDIPVQCVLIDGNRLPRMN 129 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LP QA VI GD+ S SIAAAS++AKV RDR M ++YP+YGF H GY T H + + Sbjct: 130 LPMQA--VIHGDATSASIAAASVLAKVARDRYMLALDQQYPEYGFCKHKGYGTKAHYEAL 187 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 G S +HR +F L+NL+ Sbjct: 188 AAHGISPVHRRSF--LKNLT 205 >gi|219669769|ref|YP_002460204.1| ribonuclease HII [Desulfitobacterium hafniense DCB-2] gi|254807972|sp|B8FRK8|RNH2_DESHD RecName: Full=Ribonuclease HII; Short=RNase HII gi|219540029|gb|ACL21768.1| Ribonuclease H [Desulfitobacterium hafniense DCB-2] Length = 260 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 93/201 (46%), Positives = 125/201 (62%), Gaps = 10/201 (4%) Query: 14 LEAMVRE-KNMWP-----VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHK 66 +EA++RE K +W +AGIDE GRG LAGPVV A IL N+P G+NDSKK++ Sbjct: 57 IEALLREEKQLWLNGYLHIAGIDEAGRGPLAGPVVAATCILPAKFNLP-GLNDSKKLTES 115 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KRE+L+++I AI ++ SA ID NI +AT A+ AVE L+V P LID + Sbjct: 116 KREKLFQQIKEQAIGYAVGSAEPAEIDGLNILQATKLAMKRAVEGLKVRPHFLLIDALEL 175 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P L +I GD++S SIAAASI+AKV+RD LM K YP+YGF + GY T +H Sbjct: 176 P-SLKIPQKGIIDGDALSASIAAASILAKVSRDHLMGELDKLYPEYGFAKNKGYGTREHL 234 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 ++ G S IHR +F P++ Sbjct: 235 MALRRHGVSPIHRRSFAPVQQ 255 >gi|291320659|ref|YP_003515924.1| ribonuclease H II [Mycoplasma agalactiae] gi|290752995|emb|CBH40971.1| Ribonuclease H II [Mycoplasma agalactiae] Length = 207 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 72/181 (39%), Positives = 112/181 (61%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DE GRG AGP+VVA++I+ N INDSKK+S K+R+ L+++I + I I Sbjct: 15 IAGVDEAGRGCCAGPLVVASVIMPKNYNNERINDSKKLSAKQRDILFDEILNVCIDYHIV 74 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + Y+DK+N K++ + + +++L P + D I E L + ++KGDSIS Sbjct: 75 TLPSSYVDKYNPKKSSKNGMKICIDSLNTKPDLVITDFEKIDE-LAIKQVNLVKGDSISF 133 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 ++A ASI+AKVTRDR M KY +Y F+ H GY T +H + I + G + HRLT++ + Sbjct: 134 NVACASILAKVTRDRFMIKIANKYKEYEFEKHKGYCTKRHTESIIQYGATPEHRLTYKNV 193 Query: 205 R 205 + Sbjct: 194 K 194 >gi|317486906|ref|ZP_07945716.1| ribonuclease HII [Bilophila wadsworthia 3_1_6] gi|316921781|gb|EFV43057.1| ribonuclease HII [Bilophila wadsworthia 3_1_6] Length = 237 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 82/189 (43%), Positives = 110/189 (58%), Gaps = 12/189 (6%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAGIDE GRG LAGPVV AA+IL + G+ DSK +S +R+ L +I + A+ + Sbjct: 34 VAGIDEAGRGCLAGPVVAAAVILPEGAVIPGLADSKVLSPTRRDGLAAEIGAVALAWGLG 93 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLPCQAFA-------- 135 ID+ NI +ATL A+ HA L+V P+ LIDG ++IPE L Q A Sbjct: 94 VVWPPEIDRINILQATLKAMCHAASVLKVRPKGLLIDGNQTIPEPLFRQRAACWPSSPRQ 153 Query: 136 --VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++ GD++ I+AASIIAK RD LM +YP YGF H GY + +H ++E GP Sbjct: 154 KSIVDGDALVPVISAASIIAKTFRDMLMDKLDHRYPGYGFAKHKGYGSKEHFAALRELGP 213 Query: 194 SCIHRLTFR 202 +HR TFR Sbjct: 214 CPMHRKTFR 222 >gi|256831070|ref|YP_003159798.1| Ribonuclease H [Desulfomicrobium baculatum DSM 4028] gi|256580246|gb|ACU91382.1| Ribonuclease H [Desulfomicrobium baculatum DSM 4028] Length = 207 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 75/178 (42%), Positives = 108/178 (60%), Gaps = 4/178 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG LAGPVV A+IL P+ G+ DSKK+S ++R L + I + A+ ++ Sbjct: 16 AGVDEAGRGCLAGPVVAGAVILPPDFDLPGLTDSKKLSSRRRVVLAQAIKAQAVSWALGF 75 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLPCQAFAVIKGDSISL 144 + ID+ NI +A+L A+ AVE L+V P L+DG + P LP + V+ GD++ Sbjct: 76 SWPGEIDRINILQASLAAMARAVEALRVSPGLVLVDGNQRFPSSLPQKT--VVGGDALHP 133 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AK RD L+ ++YP YG H GY T H ++ GPS HR++FR Sbjct: 134 CISAASILAKTFRDDLLLCMDQRYPGYGLAVHKGYGTKAHLDALRRLGPSPAHRVSFR 191 >gi|218288272|ref|ZP_03492571.1| Ribonuclease H [Alicyclobacillus acidocaldarius LAA1] gi|218241631|gb|EED08804.1| Ribonuclease H [Alicyclobacillus acidocaldarius LAA1] Length = 207 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 77/183 (42%), Positives = 112/183 (61%), Gaps = 8/183 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI-I 81 AG+DEVGRG +AGPVV A+++L + + DSK++ RE L ++I + A+ + Sbjct: 21 AGVDEVGRGCIAGPVVAASVVLPLELETYEELKDVMDSKQLKSDVRERLADRIRAKALAV 80 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLPCQAFAVIKGD 140 I AS + ID+ NI +AT A+ +++ L + AL+DG R+ +P V+ GD Sbjct: 81 GIGMASPEEIDRLNILQATQLAMKRSLDALDIPVDLALVDGNRAFRHRVPV--LPVVDGD 138 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + SL IAAAS+IAKV RDRLM + +P YGF HVGY T H + ++ GPS +HRL+ Sbjct: 139 ARSLPIAAASVIAKVFRDRLMAKLDEGFPGYGFSEHVGYGTRAHLEALRRLGPSVVHRLS 198 Query: 201 FRP 203 F P Sbjct: 199 FAP 201 >gi|255010102|ref|ZP_05282228.1| ribonuclease HII [Bacteroides fragilis 3_1_12] gi|313147897|ref|ZP_07810090.1| ribonuclease HII [Bacteroides fragilis 3_1_12] gi|313136664|gb|EFR54024.1| ribonuclease HII [Bacteroides fragilis 3_1_12] Length = 201 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 83/182 (45%), Positives = 109/182 (59%), Gaps = 7/182 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK++S K+R L E I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFENELLNDSKQLSEKQRYALREVIEREAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG---RSIPEDLPCQAFAVIKGDSI 142 S + IDK NI A+ A++ AV+ L+ P+ LIDG R P D+P V+KGD Sbjct: 73 VSPEEIDKINILNASFLAMHRAVDGLKTRPQHLLIDGNRFRKYP-DIPHTT--VVKGDGK 129 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 LSIAAASI+AK RD M H+++P YG+D + GYPT KH+ I E G + HR+TF Sbjct: 130 YLSIAAASILAKTYRDDYMNGLHQEFPCYGWDHNKGYPTKKHRAAIAENGVTPYHRMTFN 189 Query: 203 PL 204 L Sbjct: 190 LL 191 >gi|169830848|ref|YP_001716830.1| ribonuclease HII [Candidatus Desulforudis audaxviator MP104C] gi|169637692|gb|ACA59198.1| Ribonuclease H [Candidatus Desulforudis audaxviator MP104C] Length = 267 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/197 (41%), Positives = 112/197 (56%), Gaps = 3/197 (1%) Query: 8 ERPH--FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 ER H + E + PVAG DE GRG LAGPVV AA++L + DSK+++ Sbjct: 59 ERLHSLYGYERALEAAGCGPVAGTDEAGRGPLAGPVVAAAVVLSRGAAIPELKDSKQLTG 118 Query: 66 KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 R L ++I + I A I + NI +A+L A+ A++ L IP L+DG Sbjct: 119 PARSRLADEIRARCHAWGIGVADVGEIARLNILRASLLAMRRALDGLGFIPGWVLVDGSF 178 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 P A++KGD +S S+AAASI+AKV RD LM H+ YP+YGFD H GYPT +H Sbjct: 179 TVPLFPGPQTALVKGDRVSASVAAASILAKVYRDELMERLHRLYPEYGFDRHKGYPTPEH 238 Query: 185 QQVIKEKGPSCIHRLTF 201 Q ++ GP +HR++F Sbjct: 239 YQALERYGPCPLHRVSF 255 >gi|261378092|ref|ZP_05982665.1| ribonuclease HII [Neisseria cinerea ATCC 14685] gi|269145542|gb|EEZ71960.1| ribonuclease HII [Neisseria cinerea ATCC 14685] Length = 194 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 81/184 (44%), Positives = 109/184 (59%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L + I A Sbjct: 5 TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAKMIKEQAAAWHV 63 Query: 85 SA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +A + + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS Sbjct: 64 AAATPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLGIPAEAVVKGDSKI 123 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183 Query: 204 LRNL 207 +RNL Sbjct: 184 VRNL 187 >gi|119717477|ref|YP_924442.1| ribonuclease HII [Nocardioides sp. JS614] gi|189043632|sp|A1SLS0|RNH2_NOCSJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|119538138|gb|ABL82755.1| Ribonuclease H [Nocardioides sp. JS614] Length = 240 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 76/198 (38%), Positives = 108/198 (54%), Gaps = 4/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKRE 69 + E +R + P+AG+DE GRGA AGP+V A IL P I G+ DSK ++ + RE Sbjct: 17 YGYERALRRHGIEPIAGVDEAGRGACAGPLVAGAAILPPGKAGIVPGLADSKLLTERARE 76 Query: 70 ELYEKITSSAIISISSAS-HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 YE+I A+ H+ D+ +H A ++A+ AV L + P L DG + + Sbjct: 77 RCYEQIVRRAVSWSVVVVSHEECDRLGMHVANVEALRRAVALLDLPPAYVLTDGFPV-DG 135 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L AV KGD ++ I+AAS++AKVTRDR+M +P Y F +H GY T H + Sbjct: 136 LGVPGLAVWKGDRVAACISAASVLAKVTRDRIMTELDASWPAYDFKTHKGYITEVHSAAL 195 Query: 189 KEKGPSCIHRLTFRPLRN 206 GPS IHR+ F +R Sbjct: 196 TAHGPSPIHRMRFVNVRR 213 >gi|183981819|ref|YP_001850110.1| ribonuclease HII protein RnhB [Mycobacterium marinum M] gi|238689245|sp|B2HJL9|RNH2_MYCMM RecName: Full=Ribonuclease HII; Short=RNase HII gi|183175145|gb|ACC40255.1| ribonuclease HII protein RnhB [Mycobacterium marinum M] Length = 239 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 81/202 (40%), Positives = 115/202 (56%), Gaps = 10/202 (4%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE+ ++ + PVAG+DEVGRGA AGP+VVAA L PN ++DSKK++ K RE+L Sbjct: 20 LESALQRSGLGPVAGVDEVGRGACAGPLVVAACALGPNRYESLAALDDSKKLTEKTREKL 79 Query: 72 YEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + I A ++ I S +D+ +H A ++ + AV L V P L DG +P Sbjct: 80 FPLICRYALAYHVVFIPSVE---VDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP- 135 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L + VI GD+ + IAAAS++AKV+RDRLM +YP YGF H GY T H Sbjct: 136 GLSVPSLPVIGGDAAAACIAAASVLAKVSRDRLMVAMDTQYPGYGFAEHKGYSTRAHTLA 195 Query: 188 IKEKGPSCIHRLTFRPLRNLSV 209 + + GP HR +F +R ++ Sbjct: 196 LTQLGPCPEHRRSFINVRRVAT 217 >gi|320527486|ref|ZP_08028667.1| ribonuclease HII [Solobacterium moorei F0204] gi|320132199|gb|EFW24748.1| ribonuclease HII [Solobacterium moorei F0204] Length = 208 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 80/197 (40%), Positives = 113/197 (57%), Gaps = 18/197 (9%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 E WP + GIDE GRG LAGP+ VA ++ I DSK IS KKR+ L+E+I Sbjct: 12 EHQYWPLEKLIIGIDEAGRGPLAGPLTVAGVVFPIGYENPDIYDSKSISEKKRDALFEQI 71 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAV--ENLQVIPRSAL---IDGRSIPEDL 129 A+ I S + IDK+NI++A A+ + +++ A+ I+G+ I Sbjct: 72 QEDALWFEIIQVSPEDIDKYNIYRADQLAMEQIAIHSDAEIVLTDAMPLIIEGKEI---- 127 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++KGD S+SIAAASI+AKVTRDR+M K+YP+YGF H GYPT +H + + Sbjct: 128 ----IPLVKGDQKSISIAAASILAKVTRDRVMLEYDKEYPEYGFAKHKGYPTKQHMEALH 183 Query: 190 EKGPSCIHRLTFRPLRN 206 G + IHR +F P+R Sbjct: 184 TYGVTKIHRKSFGPVRE 200 >gi|254523247|ref|ZP_05135302.1| ribonuclease HII [Stenotrophomonas sp. SKA14] gi|219720838|gb|EED39363.1| ribonuclease HII [Stenotrophomonas sp. SKA14] Length = 221 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 79/197 (40%), Positives = 120/197 (60%), Gaps = 4/197 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREE 70 F+ A+V + + +AG+DE GRG LAGPV VAA++ DP+ G++DSK+++ +RE+ Sbjct: 14 FDGAAVVEPERL--IAGVDEAGRGPLAGPVAVAAVVFDPSRPRINGLDDSKQLTAARREQ 71 Query: 71 LYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+++I A+ + ID+ NI++ATL + V + + A IDG +P+ L Sbjct: 72 LHDRIIERALAWHVVLVDVDTIDRLNIYQATLQGMREVVAAVAHVAGFARIDGNVVPKGL 131 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A A+I GD I +I AASI+AKV+RDR M+ H ++P YGF+ H GY T H ++ Sbjct: 132 VLPAQALIGGDGIDRAIMAASILAKVSRDRYMQDVHARHPQYGFEQHKGYGTPAHLAALR 191 Query: 190 EKGPSCIHRLTFRPLRN 206 E GP HR +F P+R Sbjct: 192 EHGPCLEHRRSFAPVRE 208 >gi|118617628|ref|YP_905960.1| ribonuclease HII [Mycobacterium ulcerans Agy99] gi|166226630|sp|A0PQ70|RNH2_MYCUA RecName: Full=Ribonuclease HII; Short=RNase HII gi|118569738|gb|ABL04489.1| ribonuclease HII protein RnhB [Mycobacterium ulcerans Agy99] Length = 239 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 81/202 (40%), Positives = 115/202 (56%), Gaps = 10/202 (4%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE+ ++ + PVAG+DEVGRGA AGP+VVAA L PN ++DSKK++ K RE+L Sbjct: 20 LESALQRSGLGPVAGVDEVGRGACAGPLVVAACALGPNRYESLAALDDSKKLTEKTREKL 79 Query: 72 YEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + I A ++ I S +D+ +H A ++ + AV L V P L DG +P Sbjct: 80 FPLICRYALAYHVVFIPSVE---VDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP- 135 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L + VI GD+ + IAAAS++AKV+RDRLM +YP YGF H GY T H Sbjct: 136 GLSVPSLPVIGGDAAAACIAAASVLAKVSRDRLMVAMDTQYPGYGFAEHKGYSTRAHTLA 195 Query: 188 IKEKGPSCIHRLTFRPLRNLSV 209 + + GP HR +F +R ++ Sbjct: 196 LTQLGPCPEHRRSFINVRRVAT 217 >gi|328952474|ref|YP_004369808.1| Ribonuclease H [Desulfobacca acetoxidans DSM 11109] gi|328452798|gb|AEB08627.1| Ribonuclease H [Desulfobacca acetoxidans DSM 11109] Length = 215 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 81/197 (41%), Positives = 114/197 (57%), Gaps = 6/197 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 +LE R + + +AG+DEVGRG LAGPVV AA+IL +++ + DSK+++ +RE Sbjct: 19 DLEEAYRRQGIRFIAGVDEVGRGPLAGPVVAAAVILASDSVFPRLTDSKQLTPARREFFD 78 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++ A+ +I I+ I A+L A+ AV++L + P LIDG P L Sbjct: 79 RQVRDQALAFAIQEVGVPEIESLGILSASLKAMALAVQSLVLKPELVLIDG---PWGLQI 135 Query: 132 QAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 Q KGD LSIAAAS++AKV RDR M+ H+ YP Y F SH GY T +H + I+ Sbjct: 136 QVQQQPIIKGDQRCLSIAAASVLAKVYRDRQMQAIHELYPHYNFASHKGYGTREHLEAIR 195 Query: 190 EKGPSCIHRLTFRPLRN 206 GP +HR TFR +R Sbjct: 196 RWGPCPVHRRTFRGVRE 212 >gi|198283300|ref|YP_002219621.1| Ribonuclease H [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665608|ref|YP_002425888.1| ribonuclease HII [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247821|gb|ACH83414.1| Ribonuclease H [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517821|gb|ACK78407.1| ribonuclease HII [Acidithiobacillus ferrooxidans ATCC 23270] Length = 196 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 74/180 (41%), Positives = 107/180 (59%), Gaps = 7/180 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISIS 84 AG+DE GRG LAGPVV AA+IL +P G++DSKK++ R +I + A+ S++ Sbjct: 15 AGVDEAGRGPLAGPVVAAAVIL---RVPLHGLDDSKKMTAAARTHWAARIRNEALAWSVA 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A+ I+++NI +A+L A+ A+ L PR L+DG P Q ++ GD Sbjct: 72 RAAVWEIERYNILQASLRAMARAIVGLPRQPRRILVDGNQSPPGW--QVETLVGGDGRVD 129 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAA I+AKVTRD M++ + YP YG H+GY TA H Q ++ GP +HR F P+ Sbjct: 130 AIAAAGILAKVTRDEEMQLLDRYYPQYGLARHMGYGTAVHLQALRRWGPCALHRRGFGPV 189 >gi|89895335|ref|YP_518822.1| hypothetical protein DSY2589 [Desulfitobacterium hafniense Y51] gi|122482323|sp|Q24UB4|RNH2_DESHY RecName: Full=Ribonuclease HII; Short=RNase HII gi|89334783|dbj|BAE84378.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 260 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 93/201 (46%), Positives = 125/201 (62%), Gaps = 10/201 (4%) Query: 14 LEAMVRE-KNMWP-----VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHK 66 +EA++RE K +W +AGIDE GRG LAGPVV A IL N+P G+NDSKK++ Sbjct: 57 IEALLREEKQLWLNGYLHIAGIDEAGRGPLAGPVVAATCILPAKFNLP-GLNDSKKLTES 115 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KRE+L+++I AI ++ SA ID NI +AT A+ AVE L+V P LID + Sbjct: 116 KREKLFQQIKEQAIGYAVGSAEPAEIDGLNILQATKLAMKRAVEGLKVRPHFLLIDALEL 175 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P L +I GD++S SIAAASI+AKV+RD LM K YP+YGF + GY T +H Sbjct: 176 P-SLKIPQKGIIDGDALSASIAAASILAKVSRDHLMGELDKLYPEYGFAKNKGYGTREHL 234 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 ++ G S IHR +F P++ Sbjct: 235 MALRRCGVSPIHRRSFAPVQQ 255 >gi|315282093|ref|ZP_07870581.1| ribonuclease HII [Listeria marthii FSL S4-120] gi|313614263|gb|EFR87919.1| ribonuclease HII [Listeria marthii FSL S4-120] Length = 262 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 87/194 (44%), Positives = 124/194 (63%), Gaps = 3/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + EA + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ L+ Sbjct: 60 QYEADLFQQGYQYIAGVDEVGRGPLAGPVVAAAVILPADFSIVGINDSKQLSEAKRDALF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I + AI I + H ID+ NI++AT A+ +++ L P LID ++P Sbjct: 120 ETIKAEAIAIGVGIIEHDVIDQVNIYEATKLAMRESLDQLVPKPDFVLID--AMPLKYME 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM++ +KYP Y F +++GY T H + Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGTKNHLTGLDSI 237 Query: 192 GPSCIHRLTFRPLR 205 G IHRL+F P++ Sbjct: 238 GICPIHRLSFSPVK 251 >gi|291004125|ref|ZP_06562098.1| ribonuclease HII [Saccharopolyspora erythraea NRRL 2338] Length = 238 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 80/194 (41%), Positives = 116/194 (59%), Gaps = 4/194 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKR 68 ++ L++ + + + PVAG+DE GRGA AGP+VVAA L P + G+ DSK +S +R Sbjct: 8 NWALQSALDRRGLGPVAGVDEAGRGACAGPLVVAACALKPGDGRRFEGLTDSKVLSPAER 67 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E LY+ I + A+ +S+ +D IH A L+ + AV L V P L DG +P Sbjct: 68 ERLYDVIQAKALSLSVIVIPADEVDALGIHVANLEGMRRAVAQLSVAPGYVLTDGFRVP- 126 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L + AV+KGD ++ +AAAS++AKVTRDR+M H+++P YGFD H GY T+ H Sbjct: 127 GLGAPSVAVVKGDLVAACVAAASVLAKVTRDRIMTGLHEQFPVYGFDEHKGYCTSDHTAR 186 Query: 188 IKEKGPSCIHRLTF 201 + E GP HR + Sbjct: 187 LTEHGPCEEHRWCY 200 >gi|317473605|ref|ZP_07932894.1| ribonuclease HII [Anaerostipes sp. 3_2_56FAA] gi|316898895|gb|EFV20920.1| ribonuclease HII [Anaerostipes sp. 3_2_56FAA] Length = 225 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 91/192 (47%), Positives = 118/192 (61%), Gaps = 3/192 (1%) Query: 12 FELEAMVREKNMWP-VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 +E+ + RE + + GIDEVGRG AGPVV AA+IL + +NDSKKIS KKRE Sbjct: 30 YEMFSYEREYERYSHICGIDEVGRGPFAGPVVAAAVILPRDCDILYLNDSKKISPKKREA 89 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY+KI A+ + I AS + ID+ NI AT +A+ AV NL V P L D +IP + Sbjct: 90 LYDKIYEKALAVGIGMASEKVIDEINILNATYEAMRTAVSNLPVEPDLLLNDAVTIP-GI 148 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + +IKGD+ S SIAAASI+AKVTRDR+M + YP Y F + GY T H + IK Sbjct: 149 GTEQVPIIKGDAKSASIAAASIVAKVTRDRMMEEYDQLYPQYQFAKNKGYGTKAHIEAIK 208 Query: 190 EKGPSCIHRLTF 201 E G +HR +F Sbjct: 209 EYGICTLHRKSF 220 >gi|119485462|ref|ZP_01619790.1| ribonuclease HII [Lyngbya sp. PCC 8106] gi|119457218|gb|EAW38344.1| ribonuclease HII [Lyngbya sp. PCC 8106] Length = 199 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 81/183 (44%), Positives = 108/183 (59%), Gaps = 5/183 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI- 80 +AGIDEVGRGAL GPVV A+IL I G+ DSK++ R+ L ++I + A+ Sbjct: 5 IAGIDEVGRGALFGPVVAGAVILSDEAITALTAAGVRDSKQLRPPMRKRLAQEIRAMALS 64 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 ++ AS Q ID+ NI +ATL A+ ++ L+ P LIDG DL VIKGD Sbjct: 65 CQVAVASVQEIDRLNILQATLLAMKRSILKLKPPPDLCLIDGNQPIRDLLIPQQTVIKGD 124 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S IAAASI+AKV RD L+ KY +Y ++ GY T KH+Q ++ GPS HRL+ Sbjct: 125 QTSTVIAAASIVAKVWRDELIVRLADKYREYDLSNNKGYGTKKHRQALQRYGPSRQHRLS 184 Query: 201 FRP 203 F P Sbjct: 185 FAP 187 >gi|261364835|ref|ZP_05977718.1| ribonuclease HII [Neisseria mucosa ATCC 25996] gi|288566876|gb|EFC88436.1| ribonuclease HII [Neisseria mucosa ATCC 25996] Length = 196 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 80/189 (42%), Positives = 115/189 (60%), Gaps = 5/189 (2%) Query: 23 MWPV--AGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSA 79 M P+ AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L I A Sbjct: 1 MSPILLAGVDEAGRGPLVGSVFAAAVILPERYDLP-GLTDSKKLSEKKRDTLAVLIKEQA 59 Query: 80 IISISSASH-QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + +++ + I + NI AT+ A+ AV+ L V+P LIDG +P+DL A A++K Sbjct: 60 VSWSVASASSEEIAELNILHATMLAMTRAVQGLVVVPDKVLIDGNRVPKDLGIPAEAIVK 119 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GDS + I+AAS++AK RD M ++YP YGFD H GY TA+H +++ G HR Sbjct: 120 GDSKIIEISAASVLAKTARDAEMYALAERYPQYGFDQHKGYGTAQHLAALQKYGVLPEHR 179 Query: 199 LTFRPLRNL 207 F P++ L Sbjct: 180 RDFAPVKAL 188 >gi|307546380|ref|YP_003898859.1| ribonuclease HII [Halomonas elongata DSM 2581] gi|307218404|emb|CBV43674.1| ribonuclease HII [Halomonas elongata DSM 2581] Length = 203 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 87/196 (44%), Positives = 119/196 (60%), Gaps = 4/196 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 EL +V E +AG+DEVGRG L GPVV AA+ILDP + G+ DSKK+S K+RE L Sbjct: 5 ELPPLVIEYQGERLAGVDEVGRGPLVGPVVAAAVILDPRDPIDGLTDSKKLSAKRRESLD 64 Query: 73 EKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-EDLP 130 +I A+ S++ AS ID NI+ AT A+ A++ L L+DG +P +P Sbjct: 65 AEIRERALAWSVAEASADEIDALNIYHATHLAMRRAIDALNPAAEYLLVDGNRLPGHHVP 124 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 QA V+KGD+ +IAAASI+AKV RD M+ ++PDYGF H GYPT +H ++ Sbjct: 125 GQA--VVKGDARHAAIAAASILAKVARDAGMQTLDTRHPDYGFARHKGYPTREHLAALER 182 Query: 191 KGPSCIHRLTFRPLRN 206 GP HR +F P++ Sbjct: 183 LGPLPEHRRSFGPVKR 198 >gi|153812956|ref|ZP_01965624.1| hypothetical protein RUMOBE_03363 [Ruminococcus obeum ATCC 29174] gi|149830903|gb|EDM85993.1| hypothetical protein RUMOBE_03363 [Ruminococcus obeum ATCC 29174] Length = 251 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 88/199 (44%), Positives = 126/199 (63%), Gaps = 6/199 (3%) Query: 8 ERPHFELEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 E+ +E M++ ++ + + GIDEVGRG LAGPVV A+IL ++ +NDSKK+ Sbjct: 49 EKEKLRMEQMMQFEHKYEHLGYLCGIDEVGRGPLAGPVVACAVILPKDHPILYLNDSKKL 108 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 + KREELY+ I A+ + + AS ID+ NI +AT +A+ AV L V+P+ L D Sbjct: 109 TAHKREELYDVIMREAVAVGLGMASPARIDEINILQATYEAMRQAVSKLAVMPQLLLNDA 168 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 +IP + +IKGD+ S SIAAASI+AKVTRDRLM K P+YGF S+ GY +A Sbjct: 169 VTIP-GIEIPQVPIIKGDAKSASIAAASIVAKVTRDRLMVEYDKTMPEYGFASNKGYGSA 227 Query: 183 KHQQVIKEKGPSCIHRLTF 201 +H +++ GP+ IHR +F Sbjct: 228 EHIAALQKYGPTPIHRASF 246 >gi|225870570|ref|YP_002746517.1| ribonuclease HII [Streptococcus equi subsp. equi 4047] gi|225699974|emb|CAW93945.1| ribonuclease HII [Streptococcus equi subsp. equi 4047] Length = 257 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 89/204 (43%), Positives = 123/204 (60%), Gaps = 12/204 (5%) Query: 14 LEAMVR------EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LEAM+ +K +AGIDEVGRG LAGPVV A +IL G+NDSKKI K Sbjct: 53 LEAMLTYEQALYQKGFQAIAGIDEVGRGPLAGPVVAACVILPKGCTIKGLNDSKKIPKAK 112 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR 123 E +Y+ I A+ I + + ID+ NI++AT A+ A+ L+ P LID Sbjct: 113 HEAIYQAIQKKALGIGLGIIDNHTIDRVNIYEATKLAMTAAINQLEGSVSKPDYLLIDAM 172 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 ++ +P QA +IKGD+ S+SIAAASI+AKVTRDRLM K +P YGF + GY T + Sbjct: 173 TLEVSIPQQA--IIKGDASSMSIAAASIVAKVTRDRLMLDYDKAFPGYGFAKNAGYGTKE 230 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H Q + + G + IHR +F P++++ Sbjct: 231 HLQGLHQYGVTPIHRQSFEPIKSM 254 >gi|311748115|ref|ZP_07721900.1| ribonuclease HII [Algoriphagus sp. PR1] gi|126574759|gb|EAZ79140.1| ribonuclease HII [Algoriphagus sp. PR1] Length = 200 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 83/179 (46%), Positives = 111/179 (62%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DEVGRG LAGPVV AA+IL + INDSKK+ K+R++L E+I ++ ++ Sbjct: 14 AGCDEVGRGCLAGPVVAAAVILPSDYSNEWINDSKKLGKKQRQDLIEEIKEKSLSWKVAE 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS + ID+ NI A+ A+ A+E L+V P LIDG L VIKGD S Sbjct: 74 ASVEEIDQINILNASFLAMSRAIEGLEVSPEHLLIDGNRFKSHLTLPFTCVIKGDGKFAS 133 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AKV RD LM ++P YG++ +VGYPT H++ I+E GP HR +F+ L Sbjct: 134 IAAASILAKVYRDELMEKLALEHPHYGWERNVGYPTKAHREGIREHGPCIWHRKSFQLL 192 >gi|258647683|ref|ZP_05735152.1| ribonuclease HII [Prevotella tannerae ATCC 51259] gi|260852512|gb|EEX72381.1| ribonuclease HII [Prevotella tannerae ATCC 51259] Length = 203 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 75/181 (41%), Positives = 109/181 (60%), Gaps = 1/181 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 P AG DE GRG LAG V AA++L +NDSK++S +R L E+I A+ S+ Sbjct: 11 PEAGCDEAGRGCLAGSVYAAAVVLPEGYANARLNDSKQLSPTRRYHLREEILRDAVAWSV 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S ID+ NI A++ A++ A++ L+V P L+DG ++KGD+ Sbjct: 71 GTVSASEIDEINILNASILAMHRALDGLKVRPAFILVDGNRFKPYGSTPFATIVKGDAKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAASI+AK RD MR H++YP YG+D + GYPT +H++ I++ G + HR +FR Sbjct: 131 LSIAAASILAKTFRDDEMRRLHEQYPWYGWDHNAGYPTREHRRGIEQHGLTPYHRRSFRL 190 Query: 204 L 204 L Sbjct: 191 L 191 >gi|296113384|ref|YP_003627322.1| ribonuclease HII [Moraxella catarrhalis RH4] gi|295921078|gb|ADG61429.1| ribonuclease HII [Moraxella catarrhalis RH4] gi|326559229|gb|EGE09660.1| ribonuclease HII [Moraxella catarrhalis 46P47B1] gi|326560783|gb|EGE11150.1| ribonuclease HII [Moraxella catarrhalis 103P14B1] gi|326563524|gb|EGE13783.1| ribonuclease HII [Moraxella catarrhalis 12P80B1] gi|326569646|gb|EGE19698.1| ribonuclease HII [Moraxella catarrhalis BC1] gi|326574415|gb|EGE24357.1| ribonuclease HII [Moraxella catarrhalis 101P30B1] Length = 239 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 88/208 (42%), Positives = 116/208 (55%), Gaps = 25/208 (12%) Query: 25 PVAGIDEVGRGALAGPVVVAAIIL-----------DPNNIPFGI-NDSKKISHKKREELY 72 P+ GIDEVGRGAL G + V A+IL D N + NDSKK+S K+RE+L+ Sbjct: 19 PIVGIDEVGRGALFGNMTVGAVILPNELSGRFDEIDLTNTKISLLNDSKKLSEKRREQLF 78 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVE------NLQVIPRSALIDGRSI 125 + IT A+ +I ID+ NI++AT+ + A+E NL + LIDG + Sbjct: 79 DIITDLALDYAIVDVPSTIIDQINIYQATMLGMKIAIETIIIKNNLNEKNTTILIDGNQL 138 Query: 126 PE------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P + Q +A+IKGD+ SIA ASI+AKV RDRLM K YP+Y D H GY Sbjct: 139 PSMDGSLGEHFHQIYAMIKGDATHSSIACASILAKVHRDRLMIQHAKSYPEYLLDKHKGY 198 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 TAKH+ I E G HR +F P+R L Sbjct: 199 LTAKHKAAILEYGILPEHRRSFSPIREL 226 >gi|47093922|ref|ZP_00231661.1| ribonuclease HII [Listeria monocytogenes str. 4b H7858] gi|47017708|gb|EAL08502.1| ribonuclease HII [Listeria monocytogenes str. 4b H7858] Length = 204 Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 86/182 (47%), Positives = 118/182 (64%), Gaps = 3/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ L+E I AI I + Sbjct: 16 IAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALFETIKKEAIAIGVG 75 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 H ID+ NI++AT A+ A++ L P LID ++P ++IKGD+ S+ Sbjct: 76 IIEHDVIDQVNIYEATKLAMREALDQLTPEPDFVLID--AMPLRYTEAELSLIKGDTKSI 133 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASIIAKVTRDRLM++ +KYP Y F +++GY T KH + G IHR++F P+ Sbjct: 134 SIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGTKKHLLGLDTIGICPIHRISFAPV 193 Query: 205 RN 206 + Sbjct: 194 KE 195 >gi|89900787|ref|YP_523258.1| ribonuclease HII [Rhodoferax ferrireducens T118] gi|122479254|sp|Q21WX6|RNH2_RHOFD RecName: Full=Ribonuclease HII; Short=RNase HII gi|89345524|gb|ABD69727.1| Ribonuclease H [Rhodoferax ferrireducens T118] Length = 207 Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 81/180 (45%), Positives = 116/180 (64%), Gaps = 2/180 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84 VAG+DE GRG LAGPVV AA+ILD G+ DSK +S ++RE+L+++I + A+ I+ Sbjct: 20 VAGVDEAGRGPLAGPVVAAAVILDDLQPIKGLADSKILSARRREQLFDEIRAKALCCCIA 79 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + I++ NI +ATL A+ AVE L++ P L+DG +P L +A A++KGD++ Sbjct: 80 QASVEEIERLNILQATLLAMRRAVEGLRLKPALVLVDGNRLPV-LTMRAEAIVKGDALVA 138 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKV RDR +YP YGF H GY T +H + + G HR TF P+ Sbjct: 139 AISAASILAKVHRDRWCAEVDVQYPQYGFARHKGYGTVQHLAALTKHGACPQHRKTFGPV 198 >gi|298372107|ref|ZP_06982097.1| ribonuclease HII [Bacteroidetes oral taxon 274 str. F0058] gi|298275011|gb|EFI16562.1| ribonuclease HII [Bacteroidetes oral taxon 274 str. F0058] Length = 207 Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 72/179 (40%), Positives = 110/179 (61%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA++L + +NDSK+++ K+R+ + I +A+ +++ Sbjct: 19 AGCDEAGRGCLAGPVFAAAVVLSADFECPHLNDSKQLTEKQRQNIRLVIEQNALAWAVAR 78 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + ID NI KA++ ++ A++NL +IP +IDG + + ++KGD LS Sbjct: 79 IDAEEIDNINILKASILCMHKALDNLSIIPEHIIIDGNKFIQYRDVEYKTIVKGDGKYLS 138 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAAS++AK RD M H +YP Y ++ + GYPT+KH+Q IKE G S HR +F+ L Sbjct: 139 IAAASVLAKTHRDDYMSYLHLQYPHYQWNINKGYPTSKHRQAIKEFGISPYHRRSFKLL 197 >gi|119952851|ref|YP_945060.1| ribonuclease HII [Borrelia turicatae 91E135] gi|119861622|gb|AAX17390.1| ribonuclease HII [Borrelia turicatae 91E135] Length = 182 Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 77/178 (43%), Positives = 107/178 (60%), Gaps = 1/178 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + GIDEVGRG + GPV+ AA+I N ++DSKK++ KRE L I ++ + + Sbjct: 3 ICGIDEVGRGCIFGPVLSAAVIFKGNPKFLNALDDSKKLNKSKREYLSSLILENSYYAFA 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 ++ IDK NIH A+L A+ A E L + L+DG+ IP+ + A+IKGDSI Sbjct: 63 EVPNEIIDKINIHHASLLAMQIAYEKLNIECNLVLVDGKFIPKIKAKKIQAIIKGDSIIN 122 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G S +HR +F+ Sbjct: 123 EIKAASIIAKVQRDKLMDEYDKIYPLYALKKNKGYPTKEHKDAIKKYGISRLHRRSFQ 180 >gi|288801638|ref|ZP_06407080.1| ribonuclease HII [Prevotella melaninogenica D18] gi|288335680|gb|EFC74113.1| ribonuclease HII [Prevotella melaninogenica D18] Length = 200 Score = 131 bits (329), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 78/181 (43%), Positives = 109/181 (60%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL P+ +NDSKK++ KKR L E+I AI ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPPDYQNELLNDSKKLTAKKRYALREEIERDAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143 + + IDK NI A+ A++ A++ L V P + ++DG +DLP ++KGD Sbjct: 73 VTPEEIDKINILNASFLAMHRALDQLSVRPEAVIVDGNRFKPYQDLPSTT--IVKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAASI+AK RD M ++YP Y + S++GYPT KH+Q I E G + HR ++ Sbjct: 131 LSIAAASILAKTYRDDYMLSLAEEYPQYDWQSNMGYPTKKHRQAILEYGITPYHRKSYNL 190 Query: 204 L 204 L Sbjct: 191 L 191 >gi|225868570|ref|YP_002744518.1| ribonuclease HII [Streptococcus equi subsp. zooepidemicus] gi|225701846|emb|CAW99303.1| ribonuclease HII [Streptococcus equi subsp. zooepidemicus] Length = 257 Score = 131 bits (329), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 89/204 (43%), Positives = 123/204 (60%), Gaps = 12/204 (5%) Query: 14 LEAMVR------EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LEAM+ +K +AGIDEVGRG LAGPVV A +IL G+NDSKKI K Sbjct: 53 LEAMLTYEQALYQKGFQAIAGIDEVGRGPLAGPVVAACVILPKGCTIKGLNDSKKIPKAK 112 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR 123 E +Y+ I A+ I + + ID+ NI++AT A+ A+ L+ P LID Sbjct: 113 HEAIYQAIQKKALGIGLGIIDNHTIDRVNIYEATKLAMIAAINQLKGSVSKPDYLLIDAM 172 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 ++ +P QA +IKGD+ S+SIAAASI+AKVTRDRLM K +P YGF + GY T + Sbjct: 173 TLEVSIPQQA--IIKGDASSMSIAAASIVAKVTRDRLMLDYDKTFPGYGFAKNAGYGTKE 230 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H Q + + G + IHR +F P++++ Sbjct: 231 HLQGLHQYGVTPIHRQSFEPIKSM 254 >gi|220925905|ref|YP_002501207.1| ribonuclease HII/HIII [Methylobacterium nodulans ORS 2060] gi|219950512|gb|ACL60904.1| ribonuclease HII/HIII [Methylobacterium nodulans ORS 2060] Length = 211 Score = 131 bits (329), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 79/188 (42%), Positives = 111/188 (59%), Gaps = 6/188 (3%) Query: 20 EKNMWPVA-GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK 74 E +PV G DEVGRGAL GPV+VAA+ DP +P ++DSK++ R L + Sbjct: 9 EAARYPVLIGCDEVGRGALCGPVIVAAVHFDPAALPPDLLEALDDSKRLDAATRRRLALR 68 Query: 75 ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 + A + + AS ID+ NI ATLDA+ +V L I S +DGR +P L + Sbjct: 69 LRDCAAFAYAGASRALIDRINIRAATLDAMARSVRRLG-IAGSVAVDGRDLPPGLDGRVQ 127 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 AVI G+ + IAAASI+AKV RD LM + +++P YG++ + GY TA H+ + +GPS Sbjct: 128 AVIGGERLVPQIAAASILAKVLRDHLMTVLARRHPAYGWERNAGYGTAAHRAAMLRQGPS 187 Query: 195 CIHRLTFR 202 HR +FR Sbjct: 188 PHHRRSFR 195 >gi|320449238|ref|YP_004201334.1| ribonuclease HII [Thermus scotoductus SA-01] gi|320149407|gb|ADW20785.1| ribonuclease HII [Thermus scotoductus SA-01] Length = 205 Score = 131 bits (329), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 80/190 (42%), Positives = 107/190 (56%), Gaps = 9/190 (4%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 E + W VAG+DE GRGA AGP+VV A+IL P PF DSK + K+RE L E++ Sbjct: 9 EASFWSLGLRVAGVDEAGRGAWAGPIVVGAVILPPGRYPF--RDSKLLRPKERERLAEEV 66 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A+ ++ A +D+ + KATL A A++ L P + + D + LP Sbjct: 67 RRVALAYALGVAEVGEVDRLGVLKATLLAAQRALDLLDPPPEALVTDYLQVATSLPL--L 124 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 A K D S S+AAASI+AKV RDRLM + YP YGF H GY T +HQ+ + GPS Sbjct: 125 APPKADQNSPSVAAASILAKVHRDRLMVELDRLYPGYGFARHKGYGTPEHQEALLVLGPS 184 Query: 195 CIHRLTFRPL 204 +HR F P+ Sbjct: 185 PVHRRCFAPV 194 >gi|326559868|gb|EGE10268.1| ribonuclease HII [Moraxella catarrhalis 7169] gi|326570127|gb|EGE20172.1| ribonuclease HII [Moraxella catarrhalis BC8] gi|326570865|gb|EGE20889.1| ribonuclease HII [Moraxella catarrhalis BC7] gi|326576404|gb|EGE26313.1| ribonuclease HII [Moraxella catarrhalis O35E] Length = 248 Score = 131 bits (329), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 88/208 (42%), Positives = 116/208 (55%), Gaps = 25/208 (12%) Query: 25 PVAGIDEVGRGALAGPVVVAAIIL-----------DPNNIPFGI-NDSKKISHKKREELY 72 P+ GIDEVGRGAL G + V A+IL D N + NDSKK+S K+RE+L+ Sbjct: 28 PIVGIDEVGRGALFGNMTVGAVILPNELSGRFDEIDLTNTKISLLNDSKKLSEKRREQLF 87 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVE------NLQVIPRSALIDGRSI 125 + IT A+ +I ID+ NI++AT+ + A+E NL + LIDG + Sbjct: 88 DIITDLALDYAIVDVPSTIIDQINIYQATMLGMKIAIETIIIKNNLNEKNTTILIDGNQL 147 Query: 126 PE------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P + Q +A+IKGD+ SIA ASI+AKV RDRLM K YP+Y D H GY Sbjct: 148 PSMDGSLGEHFHQIYAMIKGDATHSSIACASILAKVHRDRLMIQHAKSYPEYLLDKHKGY 207 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 TAKH+ I E G HR +F P+R L Sbjct: 208 LTAKHKAAILEYGILPEHRRSFSPIREL 235 >gi|304319995|ref|YP_003853638.1| ribonuclease HII [Parvularcula bermudensis HTCC2503] gi|303298898|gb|ADM08497.1| ribonuclease HII [Parvularcula bermudensis HTCC2503] Length = 209 Score = 131 bits (329), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 78/187 (41%), Positives = 109/187 (58%), Gaps = 5/187 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITS--SAII 81 P+ GIDE GRGA AGPVV AA+I D P + DSK + +RE L++ +++ + Sbjct: 18 PICGIDEAGRGAWAGPVVAAAVICGDVKAYPEDLADSKTLREARREHLFDLLSARQDLRV 77 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF-AVIKGD 140 + AS ID+ + KA A+ AV+ L P AL+DG P LPC ++KGD Sbjct: 78 GVGVASVAEIDRMGVGKANWLAMARAVKALPSPPLGALVDGNYAPA-LPCPDIRPIVKGD 136 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 L IAAASI+AKVTRDR+MR ++P Y + ++ GYP H+ ++E GPS HR + Sbjct: 137 GSCLVIAAASIVAKVTRDRIMRSLCPEHPAYRWSANKGYPAPVHRAALEEIGPSAHHRHS 196 Query: 201 FRPLRNL 207 F P+ L Sbjct: 197 FAPIAAL 203 >gi|148377935|ref|YP_001256811.1| ribonuclease H II [Mycoplasma agalactiae PG2] gi|148291981|emb|CAL59373.1| Ribonuclease H II [Mycoplasma agalactiae PG2] Length = 206 Score = 131 bits (329), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 73/181 (40%), Positives = 110/181 (60%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DE GRG AGP+VVA++I+ I I DSKK+S K+R+ L+++I I I Sbjct: 15 IAGVDEAGRGCCAGPLVVASVIMPNGYINENIKDSKKLSAKQRDILFDEILKVCIDYHIV 74 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + Y+DK+N K++ + + +++L P + D I E L + ++KGDSIS Sbjct: 75 TLPSSYVDKYNPKKSSKNGMKICIDSLNTKPDLVITDFEKIDE-LAIKQVNLVKGDSISF 133 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 ++A ASI+AKVTRDR M KY +Y F+ H GY T +H + I + G S HRLT++ + Sbjct: 134 NVACASILAKVTRDRYMIKIANKYKEYEFEKHKGYCTKRHTESIIKYGASPEHRLTYKNV 193 Query: 205 R 205 R Sbjct: 194 R 194 >gi|313633474|gb|EFS00298.1| ribonuclease HII [Listeria seeligeri FSL N1-067] Length = 261 Score = 130 bits (328), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 88/181 (48%), Positives = 115/181 (63%), Gaps = 3/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG LAGPVV AA+IL N GINDSK++S KRE L+E I AI + + Sbjct: 73 IAGVDEVGRGPLAGPVVAAAVILPENFSVVGINDSKQLSELKRETLFELIKQQAIAVGVG 132 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 H ID+ NI++AT A+ A++ L P LID ++P ++IKGD+ S+ Sbjct: 133 IVEHDVIDEVNIYEATKLAMRMALDELNPSPDFILID--AMPLKYTEAELSLIKGDTKSI 190 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASIIAKVTRDRLM+ YP Y F S++GY T KH + G IHRL+F P+ Sbjct: 191 SIAAASIIAKVTRDRLMKDYDVAYPGYDFASNMGYGTKKHLIGLDTIGVCPIHRLSFAPV 250 Query: 205 R 205 + Sbjct: 251 K 251 >gi|195978102|ref|YP_002123346.1| ribonuclease HII [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|259494073|sp|B4U2W6|RNH2_STREM RecName: Full=Ribonuclease HII; Short=RNase HII gi|195974807|gb|ACG62333.1| ribonuclease HII RnhB [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 260 Score = 130 bits (328), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 88/206 (42%), Positives = 125/206 (60%), Gaps = 12/206 (5%) Query: 14 LEAMVR------EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LEAM+ +K +AGIDEVGRG LAGP+V A +IL G+NDSKKI K Sbjct: 56 LEAMLTYEQALYQKGFQAIAGIDEVGRGPLAGPIVAACVILPKGCTIKGLNDSKKIPKAK 115 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR 123 E +Y+ I A+ I + + ID+ NI++AT A+ A+ L+ P LID Sbjct: 116 HEAIYQAIQKKALGIGLGIIDNHTIDRVNIYEATKLAMIAAINQLKGSVSKPDYLLIDAM 175 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 ++ +P QA +IKGD+ S+SIAAASI+AKVTRDRLM K +P YGF + GY T + Sbjct: 176 TLEVPIPQQA--IIKGDASSMSIAAASIVAKVTRDRLMLDYDKAFPGYGFAKNAGYGTKE 233 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLSV 209 H Q + + G + IHR +F P++++++ Sbjct: 234 HLQGLHQYGITPIHRQSFEPIKSMTL 259 >gi|166031980|ref|ZP_02234809.1| hypothetical protein DORFOR_01682 [Dorea formicigenerans ATCC 27755] gi|166028433|gb|EDR47190.1| hypothetical protein DORFOR_01682 [Dorea formicigenerans ATCC 27755] Length = 219 Score = 130 bits (328), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 89/177 (50%), Positives = 118/177 (66%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84 + GIDEVGRG LAGPVV A+IL +++ +NDSKK+S KKRE LY++I + A+ + I Sbjct: 39 ICGIDEVGRGPLAGPVVAGAVILPKDDMILYLNDSKKLSEKKREMLYDEIMNRAVATGIG 98 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID+ NI +AT +A+ A++NL+V P L D +IP+ + +IKGD+ S+ Sbjct: 99 MASPARIDEINILQATYEAMRMAIDNLKVRPDILLNDAVTIPQ-VDILQVPIIKGDAKSI 157 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASIIAKVTRDRLM K P Y F S+ GY T H +KE GP+ IHR +F Sbjct: 158 SIAAASIIAKVTRDRLMVEYDKVLPGYDFASNKGYGTKAHIAGLKELGPTPIHRRSF 214 >gi|94266071|ref|ZP_01289789.1| Ribonuclease H [delta proteobacterium MLMS-1] gi|93453354|gb|EAT03785.1| Ribonuclease H [delta proteobacterium MLMS-1] Length = 236 Score = 130 bits (328), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 87/196 (44%), Positives = 122/196 (62%), Gaps = 11/196 (5%) Query: 20 EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E+++W VAG DE GRG LAGPVV A ++L P + DSK++S +R EL + Sbjct: 22 ERSLWAQGYRLVAGTDEAGRGPLAGPVVAACVVL-PVDCRSPFQDSKQLSASRRRELEAE 80 Query: 75 ITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPEDLPC 131 + + A + + AS ID NI +A+L A+ AV LQ P L+DG+ ++P +LP Sbjct: 81 LNALPGAAVGVGIASVAEIDGLNILQASLLAMRKAVTALQPPPDFLLVDGKFTVPLELPQ 140 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 QA +IKGDS S SIAAASI+AK RD+LM H++YP Y F H GY TA+H++++ Sbjct: 141 QA--LIKGDSRSASIAAASIVAKERRDQLMADLHRQYPQYNFIQHKGYATAEHRRLLHRF 198 Query: 192 GPSCIHRLTFRPLRNL 207 GP HR +F+P+R L Sbjct: 199 GPCPEHRRSFKPVREL 214 >gi|312112873|ref|YP_004010469.1| ribonuclease H [Rhodomicrobium vannielii ATCC 17100] gi|311218002|gb|ADP69370.1| Ribonuclease H [Rhodomicrobium vannielii ATCC 17100] Length = 239 Score = 130 bits (328), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 82/180 (45%), Positives = 117/180 (65%), Gaps = 4/180 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 +AG+DE GRG AGPVV AA+I P G+NDSKK++ +RE L+ KI ++A + I Sbjct: 53 IAGVDEAGRGPWAGPVVAAAVIFH-GKPPAGVNDSKKLAPAERENLFSKIFAAAHVGIGI 111 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSISL 144 A + ID+ NI+ AT A+ A+ L P +ALIDG P+ D+P +A ++ GD++S+ Sbjct: 112 APVELIDEINIYHATHRAMCDAISALAFAPNAALIDGNRCPKLDIPSEA--LVSGDALSI 169 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASIIAKVTRDR+M +P Y ++ + GY TA H ++E G + HR +FRP+ Sbjct: 170 SIAAASIIAKVTRDRMMTELASTFPPYRWERNKGYGTADHASALREYGVTLHHRRSFRPV 229 >gi|313678810|ref|YP_004056550.1| ribonuclease HIII [Mycoplasma bovis PG45] gi|312950535|gb|ADR25130.1| ribonuclease HIII [Mycoplasma bovis PG45] Length = 207 Score = 130 bits (328), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 72/183 (39%), Positives = 112/183 (61%), Gaps = 2/183 (1%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 K+ +AG+DE GRG AGP+VVA++I+ N + INDSKK+S K+RE L+++I + I Sbjct: 10 KDYKLIAGVDEAGRGCCAGPLVVASVIMPKNYVNERINDSKKLSPKQREILFDEIIDNCI 69 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 I + Y+D++N +++ + + +++L P + D I + L + ++KG Sbjct: 70 DYYILTLPASYVDEYNPKQSSKNGMKICIDSLNAKPEVVITDFEKI-DHLDIKQINLVKG 128 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DSIS ++A ASI+AKVTRDR M KY +Y F+ H GY T KH I + G + HRL Sbjct: 129 DSISFNVACASILAKVTRDRYMIKIADKYKEYEFEKHKGYCTKKHTDAIIKYGVTAEHRL 188 Query: 200 TFR 202 T++ Sbjct: 189 TYK 191 >gi|313836667|gb|EFS74381.1| ribonuclease HII [Propionibacterium acnes HL037PA2] gi|314928174|gb|EFS92005.1| ribonuclease HII [Propionibacterium acnes HL044PA1] gi|314972173|gb|EFT16270.1| ribonuclease HII [Propionibacterium acnes HL037PA3] Length = 204 Score = 130 bits (328), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 76/191 (39%), Positives = 107/191 (56%), Gaps = 6/191 (3%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L+ Sbjct: 4 ERALTRAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRITGLADSKTLSAAKREALF 63 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED-LP 130 + I + A+ +S D+ + +A + + AV L + P L DG P D L Sbjct: 64 DVIINKALAVSWVRVEADECDRLGMQEADISGLRRAVARLGIEPGYVLSDG--FPVDGLT 121 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + KGDS+ +AAASI+AKV RDR+M ++ P Y F H GY TA H++ ++E Sbjct: 122 VPDLGMWKGDSVCACVAAASIVAKVVRDRIMIAMDREVPGYDFAVHKGYATALHRRRLEE 181 Query: 191 KGPSCIHRLTF 201 GPSC HR+++ Sbjct: 182 LGPSCQHRMSY 192 >gi|218283550|ref|ZP_03489540.1| hypothetical protein EUBIFOR_02130 [Eubacterium biforme DSM 3989] gi|218215818|gb|EEC89356.1| hypothetical protein EUBIFOR_02130 [Eubacterium biforme DSM 3989] Length = 202 Score = 130 bits (328), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 79/195 (40%), Positives = 110/195 (56%), Gaps = 10/195 (5%) Query: 20 EKNMW----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 E + W V G+DE GRG +AGP++VA +I I+DSKK+S KKRE L++ I Sbjct: 7 EHDYWDQNQSVLGMDEAGRGPIAGPLMVAGVIFPKGYHNELIDDSKKLSEKKREALFKTI 66 Query: 76 TSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQA 133 A+ I + IDK NI++AT +A+ Q L D +P+ D P QA Sbjct: 67 IQDALYYQILVVDEKTIDKKNIYRATQEAMMEIANKAQC--DFVLSDAMPLPDIDKPFQA 124 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++KGD SLSIAAASI+AKVTRDR M+ + YP YG H GYPT H + + + G Sbjct: 125 --IVKGDQKSLSIAAASILAKVTRDRWMKKLDEMYPQYGLAKHKGYPTKAHIEALNQYGL 182 Query: 194 SCIHRLTFRPLRNLS 208 +R ++ P++ L Sbjct: 183 QDFYRRSYGPVKKLE 197 >gi|313675462|ref|YP_004053458.1| RNAse hii [Marivirga tractuosa DSM 4126] gi|312942160|gb|ADR21350.1| RNase HII [Marivirga tractuosa DSM 4126] Length = 209 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 85/187 (45%), Positives = 119/187 (63%), Gaps = 6/187 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DEVGRG LAGPVV +A+IL N + DSKK+S KKR EL + I +I +I+ Sbjct: 15 AGCDEVGRGCLAGPVVASAVILPTNFSHPYLTDSKKLSAKKRAELVDVIKKESIAWAIAE 74 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIP-EDLPCQAFAVIKGDSIS 143 S + ID+ NI KA+ A++ A++ L+ P L+DG R P ++P + VIKGDS Sbjct: 75 CSPEEIDQVNILKASFWAMHKALDQLKQKPDFLLVDGNRFTPYPEIPHEC--VIKGDSKY 132 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SIAAASI+AK RD LMR + +P YG++ +VGYPT +H+ I++ G + HR +F+ Sbjct: 133 FSIAAASILAKEYRDNLMRDLAEIHPHYGWERNVGYPTKQHRAGIQKFGATEHHRKSFQL 192 Query: 204 L-RNLSV 209 L R L + Sbjct: 193 LPRQLEI 199 >gi|284032640|ref|YP_003382571.1| Ribonuclease H [Kribbella flavida DSM 17836] gi|283811933|gb|ADB33772.1| Ribonuclease H [Kribbella flavida DSM 17836] Length = 232 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/199 (39%), Positives = 109/199 (54%), Gaps = 6/199 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISHKKR 68 + E +R + P+AG+DE GRG AGP+V AA+IL IP + DSK ++ K R Sbjct: 17 YGYERALRRVGLDPIAGVDEAGRGPCAGPLVAAAVILPDGKRGQIPE-LADSKLLTAKAR 75 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E Y++I A+ S+ S D+ +H A + A+ A+ L V P+ L DG + + Sbjct: 76 ERCYDEIRKRALAWSVVSIEADECDRLGMHVANVQALRRALFRLDVRPQYVLTDGFGV-D 134 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L A+ KGD ++ IAAAS++AKVTRDR+M YP YGF H GY T +HQ Sbjct: 135 GLGVPGLAIWKGDRVAACIAAASVVAKVTRDRIMEHWDTVYPQYGFAIHKGYCTPEHQAA 194 Query: 188 IKEKGPSCIHRLTFRPLRN 206 + E GP HR F +R Sbjct: 195 LDEYGPCPQHRRRFENVRR 213 >gi|21675069|ref|NP_663134.1| ribonuclease HII [Chlorobium tepidum TLS] gi|39932423|sp|Q8KAA5|RNH2_CHLTE RecName: Full=Ribonuclease HII; Short=RNase HII gi|21648308|gb|AAM73476.1| ribonuclease HII [Chlorobium tepidum TLS] Length = 205 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/188 (44%), Positives = 112/188 (59%), Gaps = 6/188 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYEKITSSA-I 80 V GIDE GRG LAGPVV AA++ + P GI +DSKK++ + R+EL I SA Sbjct: 17 VCGIDEAGRGPLAGPVVAAAVVFPRHFRPTGIFAKLDDSKKLTAELRDELALAIRESAES 76 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 ++ + ID+ NI +AT+ A+ AVE+L P L+DG LP ++KGD Sbjct: 77 WALGVVDAETIDRINILQATMLAMNLAVESLGSTPEFLLVDGNRFRPVLPIPYQTIVKGD 136 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S SIAAAS++AK RD LM + +YP+YGF+ H GYPTA+H + I G IHR + Sbjct: 137 SKVFSIAAASVLAKTHRDELMTTSAAEYPEYGFEVHFGYPTARHVEAIARHGRCAIHRQS 196 Query: 201 FRPLRNLS 208 F+ LR L Sbjct: 197 FK-LRKLG 203 >gi|118471655|ref|YP_886782.1| ribonuclease HII [Mycobacterium smegmatis str. MC2 155] gi|166226626|sp|A0QV44|RNH2_MYCS2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|118172942|gb|ABK73838.1| ribonuclease HII [Mycobacterium smegmatis str. MC2 155] Length = 272 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/197 (40%), Positives = 114/197 (57%), Gaps = 6/197 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE+ + + PVAG+DEVGRGA AGP+VVAA +L PN + ++DSKK+ K+RE L Sbjct: 20 LESALYRNGLGPVAGVDEVGRGACAGPLVVAACVLGPNRLESLAALDDSKKLGEKERERL 79 Query: 72 YEKITSSAIIS--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 + I A+ + SH+ +D+ +H A ++ + AV L V P L DG +P L Sbjct: 80 FPLIRRYALAYHVVFIPSHE-VDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP-GL 137 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + VI GD+ + IAAAS++AKV+RDRLM +++P YGF H GY T H + Sbjct: 138 SVPSLPVIGGDAAAACIAAASVLAKVSRDRLMVEMEEQHPGYGFAEHKGYITPAHTAALT 197 Query: 190 EKGPSCIHRLTFRPLRN 206 GP HR ++ +R Sbjct: 198 RHGPCVEHRYSYVNVRR 214 >gi|254455368|ref|ZP_05068797.1| ribonuclease HII [Candidatus Pelagibacter sp. HTCC7211] gi|207082370|gb|EDZ59796.1| ribonuclease HII [Candidatus Pelagibacter sp. HTCC7211] Length = 190 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/184 (44%), Positives = 109/184 (59%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M +AG+DEVGRG+L GPV AA+IL+ N + DSK IS KRE L I ++I Sbjct: 1 MKIIAGVDEVGRGSLIGPVYAAAVILNKNIDKKLLKDSKTISKIKRELLSNYIKKNSIWV 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I AS + IDK NI +A+L A+ A++ L+ P LIDG +P+ A+IKGD Sbjct: 61 IGKASVKEIDKINILQASLLAMKRAIKKLKKKPTQILIDGNKVPDIKNYNLKAIIKGDKK 120 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SI+AASIIAKV RD+ + K Y +D + GY T +H + IK+ G S HR TF Sbjct: 121 IPSISAASIIAKVARDKFITSLAKTNKGYHWDQNFGYGTKQHLKAIKKLGISKHHRKTFS 180 Query: 203 PLRN 206 P+ N Sbjct: 181 PINN 184 >gi|323484795|ref|ZP_08090152.1| ribonuclease HII [Clostridium symbiosum WAL-14163] gi|323401901|gb|EGA94242.1| ribonuclease HII [Clostridium symbiosum WAL-14163] Length = 219 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/177 (45%), Positives = 106/177 (59%), Gaps = 1/177 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDE GRG LAGPVV AA +L + + +NDSKK+S ++REEL+ +I A+ + Sbjct: 32 ICGIDEAGRGPLAGPVVAAAAVLPKDAVILWLNDSKKLSERRREELFLEIREKAVAYGVG 91 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S ID+ NI +AT +A+ AV L P L D IP + +IKGD+ S+ Sbjct: 92 IVSPAVIDEINILQATYEAMRQAVSQLPAEPDIFLNDAVMIPGINDKKQVRIIKGDAKSV 151 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAAS++AKVTRD +M K YP+YGF H GY T H I+E G IHR +F Sbjct: 152 SIAAASVLAKVTRDHMMEEYDKLYPEYGFAKHKGYGTKAHMDAIREFGVCPIHRRSF 208 >gi|323141923|ref|ZP_08076783.1| ribonuclease HII [Phascolarctobacterium sp. YIT 12067] gi|322413590|gb|EFY04449.1| ribonuclease HII [Phascolarctobacterium sp. YIT 12067] Length = 283 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/200 (41%), Positives = 126/200 (63%), Gaps = 4/200 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +LE + ++ +AG+DE GRG LAGP+V+AA+IL + G+NDSK++S KR+ L Sbjct: 62 LKLERELYDEGCELIAGVDEAGRGPLAGPLVIAAVILPKDVFISGLNDSKQLSAAKRDML 121 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y ++ + A+ I ++ S ID+ NI+ AT + +ENL P++ALID ++P +P Sbjct: 122 YNEVMAKALDIEVNIVSVSNIDELNIYYATQQGMAQVLENLHCRPQAALID--AMPVKVP 179 Query: 131 CQAF-AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +V+ GD++S SIAAASIIAKVTRDR+M YP YGF + GY + H Q + Sbjct: 180 GMKIESVVHGDALSASIAAASIIAKVTRDRIMERLDLVYPAYGFAHNKGYGSGAHMQAVS 239 Query: 190 EKGPSCIHRLTFRPLRNLSV 209 E G + HR +F P++++ + Sbjct: 240 ELGATRWHRRSFEPVKSMQL 259 >gi|22298205|ref|NP_681452.1| ribonuclease H [Thermosynechococcus elongatus BP-1] gi|39932394|sp|Q8DL36|RNH2_THEEB RecName: Full=Ribonuclease HII; Short=RNase HII gi|22294384|dbj|BAC08214.1| ribonuclease H [Thermosynechococcus elongatus BP-1] Length = 214 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/194 (42%), Positives = 117/194 (60%), Gaps = 10/194 (5%) Query: 16 AMVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKRE 69 +++ E+ W V G+DEVGRG LAGPVV AA+IL + +P + DSK+++ ++R Sbjct: 5 SLIYEQAYWQQGYSRVVGVDEVGRGCLAGPVVAAAVILPVDCVPLPEVRDSKQLTARQRS 64 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-ALIDGRSIPE 127 L+ +I AI I I SAS ID+ NI +AT A+ A+ +V P ALIDG+ Sbjct: 65 RLFAQIYHQAIAIGIGSASVAEIDQVNILQATYRAMARALG--RVAPWDHALIDGKLTKT 122 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + A+I GD S SIA ASIIAKV RDR M ++YP YG++ +VGY T +H+Q Sbjct: 123 APFERVTAIIGGDRHSYSIACASIIAKVRRDRFMARLARRYPQYGWERNVGYGTPEHRQA 182 Query: 188 IKEKGPSCIHRLTF 201 + + G + HR +F Sbjct: 183 LDQYGLTPWHRRSF 196 >gi|51598308|ref|YP_072496.1| ribonuclease HII [Borrelia garinii PBi] gi|73917600|sp|Q662W7|RNH2_BORGA RecName: Full=Ribonuclease HII; Short=RNase HII gi|51572879|gb|AAU06904.1| ribonuclease H [Borrelia garinii PBi] Length = 181 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/179 (43%), Positives = 107/179 (59%), Gaps = 3/179 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDEVGRG + GPV+ AA++ PN I ++DSKK+ +KRE L I ++ + Sbjct: 2 ICGIDEVGRGCIFGPVLSAAVVFKKKPNFIK-ELDDSKKLKKEKREYLSSLILENSYYAF 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S+ I+K NIH ATL A+ A ENL++ +DG+ +P+ A+IKGDSI Sbjct: 61 AEISNIIIEKINIHNATLLAMQTAYENLKLNCSLVFVDGKFVPKITAKTVKAIIKGDSII 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR F+ Sbjct: 121 DEIKAASIIAKVKRDKLMDEYDKIYPLYLLRKNKGYPTKEHKNAIKKYGVLSLHRRNFK 179 >gi|237734601|ref|ZP_04565082.1| ribonuclease HII [Mollicutes bacterium D7] gi|229382421|gb|EEO32512.1| ribonuclease HII [Coprobacillus sp. D7] Length = 206 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/185 (41%), Positives = 115/185 (62%), Gaps = 8/185 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI---IS 82 + G+DEVGRG +AG +VVA ++ INDSK++S KKRE LY+ I +A+ I Sbjct: 18 IIGLDEVGRGPMAGELVVAGVVFPKGFYDERINDSKQLSAKKREVLYDLIIENALYYDIE 77 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I S + +D+ N+++A+ + +E L+ AL D ++P D P ++IKGD+ Sbjct: 78 IISVAD--VDRLNVYQASKQGMEKCLELLKKEKMFALTD--AMPIDYP-DHLSIIKGDAK 132 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 S+SIA ASI+AKVTRDRLM +YP+YGF+ H GY T H++ + + G IHR +F Sbjct: 133 SISIAGASILAKVTRDRLMEAYALEYPEYGFEKHKGYVTKAHKEALGKYGVCPIHRKSFG 192 Query: 203 PLRNL 207 P++ + Sbjct: 193 PVQKI 197 >gi|226366005|ref|YP_002783788.1| ribonuclease HII [Rhodococcus opacus B4] gi|254807984|sp|C1B2S6|RNH2_RHOOB RecName: Full=Ribonuclease HII; Short=RNase HII gi|226244495|dbj|BAH54843.1| ribonuclease HII [Rhodococcus opacus B4] Length = 226 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/191 (39%), Positives = 111/191 (58%), Gaps = 4/191 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREEL 71 +E+ + + PVAG+DE GRGA AGP+VVAA +L P P ++DSKK++ + REEL Sbjct: 19 MESALVRSGLGPVAGVDEAGRGACAGPLVVAACVLAPKPYPALARLDDSKKLTERTREEL 78 Query: 72 YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + IT A+ S+ S +D+ +H A ++ + AV L P L DG +P LP Sbjct: 79 FPAITRLAVAWSVVSFPADEVDRMGVHVANIEGMRRAVAGLTTTPGYVLTDGFRVP-GLP 137 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+ + IAAAS++AKV+RDR+M + +P YGF H GY T H ++ Sbjct: 138 APSLPVIGGDAAAACIAAASVLAKVSRDRVMVAMDETHPGYGFAIHKGYNTPAHLAALEV 197 Query: 191 KGPSCIHRLTF 201 GP HR ++ Sbjct: 198 LGPCPEHRRSW 208 >gi|298480557|ref|ZP_06998754.1| ribonuclease HII [Bacteroides sp. D22] gi|295086253|emb|CBK67776.1| RNase HII [Bacteroides xylanisolvens XB1A] gi|298273378|gb|EFI14942.1| ribonuclease HII [Bacteroides sp. D22] Length = 200 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/181 (43%), Positives = 108/181 (59%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK++S K+R L E I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLSEKQRYALREVIEKEAIAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143 S + ID+ NI +A+ A++ AV+ L P+ LIDG + D+P V+KGD Sbjct: 73 VSPEEIDEINILRASFLAMHRAVDQLTTRPQHLLIDGNRFTKYPDIPHTT--VVKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAASI+AK RD M H+++P Y +D + GYPT KH+ I E+G + HR+TF Sbjct: 131 LSIAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTFNL 190 Query: 204 L 204 L Sbjct: 191 L 191 >gi|261400117|ref|ZP_05986242.1| ribonuclease HII [Neisseria lactamica ATCC 23970] gi|269210350|gb|EEZ76805.1| ribonuclease HII [Neisseria lactamica ATCC 23970] Length = 194 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/184 (43%), Positives = 110/184 (59%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L E I + A Sbjct: 5 TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAEMIKNQAAAWHV 63 Query: 85 SASH-QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +A+ + I NI AT+ A+ A++ L V P IDG IPE L A AV+KGDS Sbjct: 64 AAAGPEEIAGLNILHATMLAMKRAIDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKI 123 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M +++P YGFD H GY T +H + +++ G HR F P Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALEKYGVLPEHRRDFAP 183 Query: 204 LRNL 207 +RNL Sbjct: 184 VRNL 187 >gi|313638164|gb|EFS03420.1| ribonuclease HII [Listeria seeligeri FSL S4-171] Length = 261 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 88/181 (48%), Positives = 115/181 (63%), Gaps = 3/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG LAGPVV AA+IL N GINDSK++S KRE L+E I AI + + Sbjct: 73 IAGVDEVGRGPLAGPVVAAAVILPENFSVVGINDSKQLSELKRETLFELIKQQAIAVGVG 132 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 H ID+ NI++AT A+ A++ L P LID ++P ++IKGD+ S+ Sbjct: 133 IIEHDVIDEVNIYEATKLAMRMALDELNPSPDFILID--AMPLKYTEAELSLIKGDTKSI 190 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASIIAKVTRDRLM+ YP Y F S++GY T KH + G IHRL+F P+ Sbjct: 191 SIAAASIIAKVTRDRLMKDYDVAYPGYDFASNMGYGTKKHLIGLDTIGVCPIHRLSFAPV 250 Query: 205 R 205 + Sbjct: 251 K 251 >gi|220905054|ref|YP_002480366.1| Ribonuclease H [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869353|gb|ACL49688.1| Ribonuclease H [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 230 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/192 (41%), Positives = 109/192 (56%), Gaps = 16/192 (8%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 AGIDE GRG LAGPVV A+IL P G+ DSK + ++R L +I SA+ + Sbjct: 26 TAGIDEAGRGCLAGPVVAGAVILPPEYDLPGLADSKACTARQRGLLAPRIKKSALAWGLG 85 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPE-------------DLP 130 ID+ NI +AT +A+ AV +L++ P+ L+DG + IPE LP Sbjct: 86 IVWPDRIDRINILQATFEAMSMAVRHLRITPQILLVDGNKVIPEPALAPQWLRAHGDTLP 145 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 Q A++ GD+ +I+AASI+AK RD LM K++P YGF H GY T +H + ++ Sbjct: 146 LQR-AIVGGDAAEPAISAASILAKTCRDTLMTSLDKRWPGYGFAIHKGYGTKEHYEALRR 204 Query: 191 KGPSCIHRLTFR 202 GP HRLTFR Sbjct: 205 LGPCPQHRLTFR 216 >gi|256383963|gb|ACU78533.1| ribonuclease HII [Mycoplasma mycoides subsp. capri str. GM12] gi|256384795|gb|ACU79364.1| ribonuclease HII [Mycoplasma mycoides subsp. capri str. GM12] gi|296455877|gb|ADH22112.1| ribonuclease HII [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 207 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/202 (36%), Positives = 121/202 (59%), Gaps = 2/202 (0%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 +R F+ + + + N+ ++G DE GRG LAGP+VVA++IL + I DSKK++ K Sbjct: 3 DRKLFD-DQIKLDHNITYLSGSDEAGRGCLAGPLVVASVILKADYFNPLIKDSKKLNPKT 61 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R+ L+++I + + I S + +D+ N +A+L + NL++ P LIDG Sbjct: 62 RQLLFDEIIKNCLDYQIIVISSKQVDELNPLQASLLGFKTTISNLKITPDLGLIDGNQNI 121 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + ++IKGD S SIA +SI+AKVTRD+++ + YP+YGF SH GY T +H Sbjct: 122 NLENIKTLSIIKGDDKSFSIACSSILAKVTRDKILDQYDQIYPNYGFKSHKGYCTKQHLL 181 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 I++ G IHR +++P++ +S Sbjct: 182 AIQKYGILDIHRKSYKPIKKIS 203 >gi|167768005|ref|ZP_02440058.1| hypothetical protein CLOSS21_02548 [Clostridium sp. SS2/1] gi|167710334|gb|EDS20913.1| hypothetical protein CLOSS21_02548 [Clostridium sp. SS2/1] gi|291561007|emb|CBL39807.1| Ribonuclease HII [butyrate-producing bacterium SSC/2] Length = 218 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 89/192 (46%), Positives = 119/192 (61%), Gaps = 3/192 (1%) Query: 12 FELEAMVRE-KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 +E+ + RE N + GIDEVGRG AGPVV AA+IL + +NDSKK+S KKRE Sbjct: 23 YEMFSFEREYGNHQAICGIDEVGRGPFAGPVVAAAVILPKDCDILYLNDSKKLSEKKREL 82 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY++I A+ I I +S + ID+ NI +AT A+ A+ L + P L D +IP D+ Sbjct: 83 LYDEIYEKAVAIGIGMSSEEVIDEINILQATYKAMQQAISKLSIKPDLLLNDAVTIP-DV 141 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + +IKGD+ S SIAAASI+AKVTRDR+M+ YP Y F + GY T H + IK Sbjct: 142 EIEQIPIIKGDAKSASIAAASIVAKVTRDRMMKEYDIIYPGYDFAKNKGYGTKAHIEGIK 201 Query: 190 EKGPSCIHRLTF 201 ++G IHR TF Sbjct: 202 KQGICDIHRRTF 213 >gi|148238709|ref|YP_001224096.1| ribonuclease HII [Synechococcus sp. WH 7803] gi|189043669|sp|A5GIN4|RNH2_SYNPW RecName: Full=Ribonuclease HII; Short=RNase HII gi|147847248|emb|CAK22799.1| Ribonuclease HII [Synechococcus sp. WH 7803] Length = 194 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/180 (41%), Positives = 105/180 (58%), Gaps = 7/180 (3%) Query: 28 GIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 G+DEVGRG L GPV AA+ L D G+ DSK +S K+R +L I + A + Sbjct: 4 GVDEVGRGCLFGPVFAAAVSLTGAADAELTALGLTDSKALSAKRRADLVPHIQAKASAWA 63 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL-PCQAFAVIKGDS 141 + S + ID H I AT A+ A++ L + P L+DG +P L P +++GDS Sbjct: 64 LGQGSAREIDAHGIRVATELAMLRALQKLPIQPELVLVDG-VLPLRLWPGAQRTIVRGDS 122 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAAS++AKV RD LM +++P+YGF+ H GY TA H+Q + GP+ +HR +F Sbjct: 123 QEASIAAASVLAKVARDGLMCRLAERFPEYGFERHAGYGTALHRQALITSGPTALHRKSF 182 >gi|291459085|ref|ZP_06598475.1| ribonuclease HII [Oribacterium sp. oral taxon 078 str. F0262] gi|291418339|gb|EFE92058.1| ribonuclease HII [Oribacterium sp. oral taxon 078 str. F0262] Length = 247 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/185 (41%), Positives = 109/185 (58%), Gaps = 6/185 (3%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 N+ + G+DE GRG LAGPVV A +L + + ++DSKK+S K+RE L+ +IT A+ Sbjct: 34 NLSLIGGVDEAGRGPLAGPVVAACCVLPKDALILYLDDSKKLSEKRRELLFPEITKKALA 93 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAV----ENLQVIPRSALIDGRSIPEDLPCQAFAV 136 + + ID+ NI A+ +A+ ++ L P L D +IP + + Sbjct: 94 FGVGIVGEKRIDEINILNASYEAMRLSILSVSSKLGRPPELLLNDAVTIP-GIEIPQLPI 152 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 I+GDS SLSIAAAS+IAKV RDRLM +++P YGF H GY TA H++ I KG I Sbjct: 153 IRGDSKSLSIAAASVIAKVIRDRLMLRYDREFPGYGFARHKGYGTALHREKILSKGLCRI 212 Query: 197 HRLTF 201 HR +F Sbjct: 213 HRRSF 217 >gi|213964538|ref|ZP_03392738.1| ribonuclease HII [Corynebacterium amycolatum SK46] gi|213952731|gb|EEB64113.1| ribonuclease HII [Corynebacterium amycolatum SK46] Length = 205 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/195 (38%), Positives = 105/195 (53%), Gaps = 4/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREEL 71 +E + ++ + PVAG+DE GRGA AGP+V+AA L I + DSKK++ RE L Sbjct: 1 MEVALAKRGLGPVAGVDEAGRGACAGPIVIAACCLPERPIAELDKLTDSKKLTPAARERL 60 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I AI +++ YID+ I A + + AV L+ P L D + Sbjct: 61 FPLIQRFAISFCVTTIPASYIDQFGIQDANVTGMRRAVAGLEQRPGYVLTDALKV-SGFT 119 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 VI GDS IAAAS++AKVTRDR+M +KYPDYG H GY TA H + I Sbjct: 120 APYLPVIGGDSTCRCIAAASVLAKVTRDRIMVDLSEKYPDYGLAGHKGYGTASHMEAISR 179 Query: 191 KGPSCIHRLTFRPLR 205 G + HR ++R +R Sbjct: 180 HGATPEHRWSYRNVR 194 >gi|317058954|ref|ZP_07923439.1| ribonuclease HII [Fusobacterium sp. 3_1_5R] gi|313684630|gb|EFS21465.1| ribonuclease HII [Fusobacterium sp. 3_1_5R] Length = 211 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 81/183 (44%), Positives = 112/183 (61%), Gaps = 8/183 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAIISIS 84 + G+DE GRG LAGPVV AA +L + I DSKK++ KKRE L+ I + I Sbjct: 21 IVGVDEAGRGPLAGPVVAAATLLKQYDRSLDSIQDSKKLTEKKREALFSVIPQFFYVGIG 80 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQ----VIPRSALIDGRSIPEDLPCQAFAVIKGD 140 AS + I+K+NI AT A+ A+ NL+ + + L+DG + + AV+KGD Sbjct: 81 QASVEEIEKYNILNATFLAMRRALANLEEQVEIQDATILVDGNFTIRECQRKQEAVVKGD 140 Query: 141 SISLSIAAASIIAKVTRD-RLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHR 198 + SLSIAAASI+AKVTRD +L+ +A K+YPDY F+ H GY T H++ I GP +HR Sbjct: 141 AKSLSIAAASIMAKVTRDHKLVELA-KQYPDYLFEKHKGYGTKVHREKILSLGPIPGVHR 199 Query: 199 LTF 201 +F Sbjct: 200 DSF 202 >gi|309379099|emb|CBX22230.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 194 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/184 (43%), Positives = 110/184 (59%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L + I + A Sbjct: 5 TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAKIIKNQAAAWHV 63 Query: 85 SASH-QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +A+ + I NI AT+ A+ A++ L V P IDG IPE L A AV+KGDS Sbjct: 64 AAAGPEEIASLNILHATMLAMKRAIDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKI 123 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P Sbjct: 124 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 183 Query: 204 LRNL 207 +RNL Sbjct: 184 VRNL 187 >gi|134102484|ref|YP_001108145.1| ribonuclease HII [Saccharopolyspora erythraea NRRL 2338] gi|189043652|sp|A4FME5|RNH2_SACEN RecName: Full=Ribonuclease HII; Short=RNase HII gi|133915107|emb|CAM05220.1| ribonuclease HII [Saccharopolyspora erythraea NRRL 2338] Length = 228 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/191 (41%), Positives = 114/191 (59%), Gaps = 4/191 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREEL 71 +++ + + + PVAG+DE GRGA AGP+VVAA L P + G+ DSK +S +RE L Sbjct: 1 MQSALDRRGLGPVAGVDEAGRGACAGPLVVAACALKPGDGRRFEGLTDSKVLSPAERERL 60 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I + A+ +S+ +D IH A L+ + AV L V P L DG +P L Sbjct: 61 YDVIQAKALSLSVIVIPADEVDALGIHVANLEGMRRAVAQLSVAPGYVLTDGFRVP-GLG 119 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + AV+KGD ++ +AAAS++AKVTRDR+M H+++P YGFD H GY T+ H + E Sbjct: 120 APSVAVVKGDLVAACVAAASVLAKVTRDRIMTGLHEQFPVYGFDEHKGYCTSDHTARLTE 179 Query: 191 KGPSCIHRLTF 201 GP HR + Sbjct: 180 HGPCEEHRWCY 190 >gi|190573489|ref|YP_001971334.1| putative ribonuclease HII [Stenotrophomonas maltophilia K279a] gi|190011411|emb|CAQ45029.1| putative ribonuclease HII [Stenotrophomonas maltophilia K279a] Length = 223 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/197 (40%), Positives = 119/197 (60%), Gaps = 4/197 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREE 70 F+ A+V + + VAG+DE GRG LAGPV VAA++ DP G++DSK+++ +RE+ Sbjct: 14 FDGAAVVEPERL--VAGVDEAGRGPLAGPVAVAAVVFDPARPRINGLDDSKQLTAARREQ 71 Query: 71 LYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+++I A+ + ID+ NI++ATL + V + + A IDG +P+ L Sbjct: 72 LHDRIIERALAWHVVLVDVDTIDRLNIYQATLQGMRDVVAAVAHVAGFARIDGNVVPKGL 131 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A A++ GD I +I AASI+AKV+RDR M+ H ++P YGF+ H GY T H ++ Sbjct: 132 VLPAQALVGGDGIDRAIMAASILAKVSRDRYMQDVHARHPQYGFEHHKGYGTPAHLAALR 191 Query: 190 EKGPSCIHRLTFRPLRN 206 E GP HR +F P+R Sbjct: 192 EHGPCMEHRRSFAPVRE 208 >gi|319649582|ref|ZP_08003738.1| hypothetical protein HMPREF1013_00342 [Bacillus sp. 2_A_57_CT2] gi|317398744|gb|EFV79426.1| hypothetical protein HMPREF1013_00342 [Bacillus sp. 2_A_57_CT2] Length = 259 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 88/196 (44%), Positives = 119/196 (60%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E R + +AGIDEVGRG LAGPVV AA+IL + G++DSKK+ KREE Sbjct: 61 QYEVRYRSQGFQFIAGIDEVGRGPLAGPVVAAAVILPEDFFLPGLDDSKKVPESKREEFS 120 Query: 73 EKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I + +A S+ + ID+ NI +AT A+ A+E L P L D + P Sbjct: 121 EIIKAKAAAFSVGIIDPEEIDRINIFEATKKAMLSAIEGLSPKPDFLLADAVKLLTPYPM 180 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +A +IKGD S+SIAAASIIAKVTRDR+M K++P YGF+ ++GY T +H + I Sbjct: 181 EA--IIKGDGKSISIAAASIIAKVTRDRMMAEIGKEFPQYGFEKNMGYGTKEHLEAITLH 238 Query: 192 GPSCIHRLTFRPLRNL 207 G S HR +F P++NL Sbjct: 239 GISPYHRKSFAPIKNL 254 >gi|315302908|ref|ZP_07873644.1| ribonuclease HII [Listeria ivanovii FSL F6-596] gi|313628722|gb|EFR97119.1| ribonuclease HII [Listeria ivanovii FSL F6-596] Length = 261 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/195 (44%), Positives = 123/195 (63%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + ++ + +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ L+ Sbjct: 60 QYETDLYKRGVKYIAGVDEVGRGPLAGPVVAAAVILPEHFSVIGINDSKQLSEAKRDILF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + IT A+ + I H ID+ NI++AT A+ A++ L P LID ++P Sbjct: 120 DLITEQALAVGIGIIEHDVIDQVNIYEATKLAMRKALDELNPKPDFVLID--AMPLKYTE 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRD+LM+ K YP Y F S++GY T KH + Sbjct: 178 SELSLIKGDTKSISIAAASIIAKVTRDKLMKEYEKTYPGYDFASNMGYGTKKHLYGLDTI 237 Query: 192 GPSCIHRLTFRPLRN 206 G IHRL+F P++ Sbjct: 238 GICPIHRLSFSPVKE 252 >gi|169630303|ref|YP_001703952.1| ribonuclease HII [Mycobacterium abscessus ATCC 19977] gi|238688907|sp|B1MDH9|RNH2_MYCA9 RecName: Full=Ribonuclease HII; Short=RNase HII gi|169242270|emb|CAM63298.1| Ribonuclease HII (RNase HII) [Mycobacterium abscessus] Length = 234 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/199 (40%), Positives = 113/199 (56%), Gaps = 4/199 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE + + PVAG+DE GRGA AGP+V+AA +L N +NDSKK++ K RE L Sbjct: 20 LELTLDRVGLGPVAGVDEAGRGACAGPLVIAACVLGSNQRKSLAALNDSKKLTEKMRETL 79 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A + S +D+ +H A ++ + AV L V P L DG +P LP Sbjct: 80 FPLICRYAEAYHVVSVPADEVDRIGVHVANIEGMRRAVAGLGVKPGYVLTDGFRVP-GLP 138 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+ + IAAAS++AKV+RDR+M +P YGF H GY TA H + ++ Sbjct: 139 VPSLPVIGGDASAACIAAASVLAKVSRDRVMVNMDSDHPGYGFAVHKGYSTAVHTEALRR 198 Query: 191 KGPSCIHRLTFRPLRNLSV 209 GPS HR +F +RN ++ Sbjct: 199 LGPSAQHRQSFVNVRNAAM 217 >gi|167747194|ref|ZP_02419321.1| hypothetical protein ANACAC_01908 [Anaerostipes caccae DSM 14662] gi|167654154|gb|EDR98283.1| hypothetical protein ANACAC_01908 [Anaerostipes caccae DSM 14662] Length = 225 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 89/192 (46%), Positives = 118/192 (61%), Gaps = 3/192 (1%) Query: 12 FELEAMVREKNMWP-VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 +E+ + RE + + GIDEVGRG AGPVV AA+IL + +NDSKK+S KKRE Sbjct: 30 YEMFSYEREYERYSHICGIDEVGRGPFAGPVVAAAVILPRDCDILYLNDSKKVSPKKREA 89 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY++I A+ + I AS + ID+ NI AT +A+ AV NL V P L D +IP + Sbjct: 90 LYDEIYEKALAVGIGMASEKVIDEINILNATYEAMRTAVSNLPVKPDLLLNDAVTIP-GI 148 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + +IKGD+ S SIAAASI+AKVTRDR+M + YP Y F + GY T H + IK Sbjct: 149 GTEQVPIIKGDAKSASIAAASIVAKVTRDRMMEEYDQLYPQYQFAKNKGYGTKAHIEAIK 208 Query: 190 EKGPSCIHRLTF 201 E G +HR +F Sbjct: 209 EYGICTLHRKSF 220 >gi|313667504|ref|YP_004047788.1| ribonuclease HII [Neisseria lactamica ST-640] gi|313004966|emb|CBN86394.1| ribonuclease HII [Neisseria lactamica 020-06] Length = 212 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/184 (43%), Positives = 110/184 (59%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 AG+DE GRG L G V AA+IL + ++P G+ DSKK+S KKR+ L + I + A Sbjct: 23 TAGVDEAGRGPLVGSVFAAAVILPETFDLP-GLTDSKKLSEKKRDALAKIIKNQAAAWHV 81 Query: 85 SASH-QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +A+ + I NI AT+ A+ A++ L V P IDG IPE L A AV+KGDS Sbjct: 82 AAAGPEEIASLNILHATMLAMKRAIDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKI 141 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P Sbjct: 142 IEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAP 201 Query: 204 LRNL 207 +RNL Sbjct: 202 VRNL 205 >gi|257452411|ref|ZP_05617710.1| ribonuclease HII [Fusobacterium sp. 3_1_5R] Length = 210 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/183 (44%), Positives = 112/183 (61%), Gaps = 8/183 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAIISIS 84 + G+DE GRG LAGPVV AA +L + I DSKK++ KKRE L+ I + I Sbjct: 20 IVGVDEAGRGPLAGPVVAAATLLKQYDRSLDSIQDSKKLTEKKREALFSVIPQFFYVGIG 79 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQ----VIPRSALIDGRSIPEDLPCQAFAVIKGD 140 AS + I+K+NI AT A+ A+ NL+ + + L+DG + + AV+KGD Sbjct: 80 QASVEEIEKYNILNATFLAMRRALANLEEQVEIQDATILVDGNFTIRECQRKQEAVVKGD 139 Query: 141 SISLSIAAASIIAKVTRD-RLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHR 198 + SLSIAAASI+AKVTRD +L+ +A K+YPDY F+ H GY T H++ I GP +HR Sbjct: 140 AKSLSIAAASIMAKVTRDHKLVELA-KQYPDYLFEKHKGYGTKVHREKILSLGPIPGVHR 198 Query: 199 LTF 201 +F Sbjct: 199 DSF 201 >gi|323691868|ref|ZP_08106122.1| ribonuclease [Clostridium symbiosum WAL-14673] gi|323504075|gb|EGB19883.1| ribonuclease [Clostridium symbiosum WAL-14673] Length = 219 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/177 (45%), Positives = 106/177 (59%), Gaps = 1/177 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDE GRG LAGPVV AA +L + + +NDSKK+S ++REEL+ +I A+ + Sbjct: 32 ICGIDEAGRGPLAGPVVAAAAVLPKDAVILWLNDSKKLSERRREELFLEIREKAVAYGVG 91 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S ID+ NI +AT +A+ AV L P L D IP + +IKGD+ S+ Sbjct: 92 IVSPAVIDEINILQATYEAMRQAVSQLPAEPDIFLNDAVMIPGIDDKKQVRIIKGDAKSV 151 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAAS++AKVTRD +M K YP+YGF H GY T H I+E G IHR +F Sbjct: 152 SIAAASVLAKVTRDHMMEEYDKLYPEYGFAKHKGYGTKAHMVAIREFGVCPIHRRSF 208 >gi|293370450|ref|ZP_06617003.1| ribonuclease HII [Bacteroides ovatus SD CMC 3f] gi|292634442|gb|EFF52978.1| ribonuclease HII [Bacteroides ovatus SD CMC 3f] Length = 200 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/181 (43%), Positives = 107/181 (59%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK++S K+R L E I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLSEKQRYALREVIEKEAIAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143 S + ID+ NI +A+ A++ AV+ L P+ LIDG + D+P V+KGD Sbjct: 73 VSPEEIDEINILRASFLAMHRAVDQLTTRPQHLLIDGNRFTKYPDIPHTT--VVKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAASI+AK RD M H ++P Y +D + GYPT KH+ I E+G + HR+TF Sbjct: 131 LSIAAASILAKTYRDDYMNRLHDEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTFNL 190 Query: 204 L 204 L Sbjct: 191 L 191 >gi|317498401|ref|ZP_07956696.1| ribonuclease HII [Lachnospiraceae bacterium 5_1_63FAA] gi|316894295|gb|EFV16482.1| ribonuclease HII [Lachnospiraceae bacterium 5_1_63FAA] Length = 218 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/192 (45%), Positives = 119/192 (61%), Gaps = 3/192 (1%) Query: 12 FELEAMVRE-KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 +E+ + RE + + GIDEVGRG AGPVV AA+IL + +NDSKK+S KKRE Sbjct: 23 YEMFSFEREYGDHQAICGIDEVGRGPFAGPVVAAAVILPKDCDILYLNDSKKLSEKKREL 82 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY++I A+ I I +S + ID+ NI +AT A+ A+ L + P L D +IP D+ Sbjct: 83 LYDEIYEKAVAIGIGMSSEEVIDEINILQATYKAMQQAISKLSIKPDLLLNDAVTIP-DV 141 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + +IKGD+ S SIAAASI+AKVTRDR+M+ YP Y F + GY T H + IK Sbjct: 142 EIEQVPIIKGDAKSASIAAASIVAKVTRDRMMKEYDTIYPGYDFAKNKGYGTKAHIEGIK 201 Query: 190 EKGPSCIHRLTF 201 ++G IHR TF Sbjct: 202 KQGICDIHRRTF 213 >gi|295110185|emb|CBL24138.1| Ribonuclease HII [Ruminococcus obeum A2-162] Length = 251 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/199 (43%), Positives = 123/199 (61%), Gaps = 6/199 (3%) Query: 8 ERPHFELEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 E +E M++ ++ + + GIDEVGRG LAGPVV A+IL ++ +NDSKK+ Sbjct: 49 EAEKLRMEQMMQYEHKYEHLGYLCGIDEVGRGPLAGPVVACAVILPADHQILYLNDSKKL 108 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 + KREELY+ I A+ + I ID+ NI +AT +A+ A+ L+V P+ L D Sbjct: 109 TAHKREELYDVILREAVAVGIGMVGPAKIDEINILQATYEAMRQAISKLKVTPQLLLNDA 168 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 +IP + +IKGD+ S SIAAASI+AKVTRDRLM K P YGF S+ GY + Sbjct: 169 VTIP-GVEVPQVPIIKGDAKSASIAAASIVAKVTRDRLMVEYDKTLPGYGFASNKGYGST 227 Query: 183 KHQQVIKEKGPSCIHRLTF 201 +H + +K+ GP+ IHR+TF Sbjct: 228 EHIEALKKFGPTPIHRVTF 246 >gi|216264047|ref|ZP_03436041.1| ribonuclease HII [Borrelia afzelii ACA-1] gi|215980091|gb|EEC20913.1| ribonuclease HII [Borrelia afzelii ACA-1] Length = 181 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 108/179 (60%), Gaps = 3/179 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDEVGRG + GP++ AA++ PN I ++DSKK++ +KRE L I ++ + Sbjct: 2 ICGIDEVGRGCIFGPILSAAVVFKKKPNFIK-ELDDSKKLTKEKREYLSSLILENSYYAF 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S+ I+K NIH A+L A+ A ENL++ IDG+ +P+ A+IKGDSI Sbjct: 61 AEISNITIEKINIHNASLLAMQTAYENLKLNCNLVFIDGKFVPKISAKNVKAIIKGDSII 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR F+ Sbjct: 121 DEIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFK 179 >gi|224532055|ref|ZP_03672687.1| ribonuclease HII [Borrelia valaisiana VS116] gi|224511520|gb|EEF81926.1| ribonuclease HII [Borrelia valaisiana VS116] Length = 181 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 108/179 (60%), Gaps = 3/179 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDEVGRG + GP++ AA++ P+ + ++DSKK+ +KRE LY I ++ + Sbjct: 2 ICGIDEVGRGCIFGPILSAAVVFKKKPSFVK-ELDDSKKLKKEKREYLYSLILENSYYAF 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S+ I+K NIH A+L A+ A ENL++ +DG+ +P+ A+IKGDSI Sbjct: 61 AEISNITIEKINIHNASLLAMQTAYENLKLNCSLVFVDGKFVPKITAKTVKAIIKGDSII 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR F+ Sbjct: 121 DEIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFK 179 >gi|227499923|ref|ZP_03930016.1| ribonuclease H [Anaerococcus tetradius ATCC 35098] gi|227218032|gb|EEI83305.1| ribonuclease H [Anaerococcus tetradius ATCC 35098] Length = 209 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/177 (42%), Positives = 107/177 (60%), Gaps = 3/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AGIDEVGRG LAGPVV A+I+ ++ G+ DSKK++ KK L +KI + + + Sbjct: 21 IAGIDEVGRGPLAGPVVTCALIMKKDSKIEGVTDSKKLTRKKMLVLKDKILADCLTYAYG 80 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A+ IDK NI AT A+ A+ NL++ P LID I DLP ++KGD Sbjct: 81 YANSLLIDKLNIKNATHKAMEDALNNLKIRPEIVLIDAERINTDLP--QMNIVKGDLNEY 138 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I+ ASI+AK+ RD +M K Y YGF++++GY T KH + +++ G + IHR TF Sbjct: 139 VISCASILAKIRRDDIMINFSKIYKGYGFETNMGYGTKKHYEGLEKYGETPIHRQTF 195 >gi|224536639|ref|ZP_03677178.1| hypothetical protein BACCELL_01515 [Bacteroides cellulosilyticus DSM 14838] gi|224521730|gb|EEF90835.1| hypothetical protein BACCELL_01515 [Bacteroides cellulosilyticus DSM 14838] Length = 201 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/181 (43%), Positives = 108/181 (59%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ +R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEHQRYALREVIEKEALAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143 S + IDK NI A+ A++ AV+ L++ P+ LIDG +DLP VIKGD Sbjct: 73 VSPEEIDKINILNASFLAMHRAVDQLKMRPQHLLIDGNRFKKYQDLPHTT--VIKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAAS++AK RD M H+++P Y +D + GYPT KH+ I E+G + HR+TF Sbjct: 131 LSIAAASVLAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAISERGTTPYHRMTFNL 190 Query: 204 L 204 L Sbjct: 191 L 191 >gi|313665432|ref|YP_004047303.1| ribonuclease HII [Mycoplasma leachii PG50] gi|312949606|gb|ADR24202.1| ribonuclease HII [Mycoplasma leachii PG50] Length = 207 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/188 (39%), Positives = 113/188 (60%), Gaps = 1/188 (0%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 N+ ++G DE GRG LAG +VVA++IL + I DSKK++ K R+ LY++I + + Sbjct: 16 NITYLSGSDEAGRGCLAGSLVVASVILKLDYFNPLIKDSKKLNPKTRQVLYDEIIKNCLD 75 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I S + +D+ N +A+L + NL++ P ALIDG E + +IKGD Sbjct: 76 YQIIIISSKQVDEFNPLQASLLGFKTTINNLKITPDLALIDGNQNIELTNIKTLPIIKGD 135 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S SIA +SI+AKVTRD+++ + YP+Y F SH GY T KH I++ G IHR + Sbjct: 136 DKSFSIACSSILAKVTRDKILDEYDQIYPNYDFKSHKGYCTKKHLLAIQKYGILDIHRKS 195 Query: 201 FRPLRNLS 208 ++P++ +S Sbjct: 196 YKPIKKIS 203 >gi|325971128|ref|YP_004247319.1| ribonuclease H [Spirochaeta sp. Buddy] gi|324026366|gb|ADY13125.1| Ribonuclease H [Spirochaeta sp. Buddy] Length = 209 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/179 (44%), Positives = 107/179 (59%), Gaps = 4/179 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 + G+DE GRG LAGPVV AA+IL P+ +NDSKK+S K+R E I A+ ++ Sbjct: 16 LCGLDEAGRGPLAGPVVAAAVILGPDFPTEILNDSKKLSEKQRLEAEIVIKQKALYWAVG 75 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 A+ Q ID+ NI +A+L A+ A E + Q+ AL+DG P +L C A++ GD++ Sbjct: 76 LATAQEIDRINILQASLLAMKRAYEKISSQIHVDVALVDGNQRP-NLDCITQAIVGGDAL 134 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I AASI+AK RDR M + H K+P Y F H GYPT +H+ G S IHR TF Sbjct: 135 IPQIMAASILAKNQRDRYMVLCHTKWPFYNFAKHKGYPTEEHRSACLLYGLSPIHRRTF 193 >gi|163814002|ref|ZP_02205395.1| hypothetical protein COPEUT_00154 [Coprococcus eutactus ATCC 27759] gi|158450696|gb|EDP27691.1| hypothetical protein COPEUT_00154 [Coprococcus eutactus ATCC 27759] Length = 255 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 86/178 (48%), Positives = 113/178 (63%), Gaps = 4/178 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG LAGPVV AA+IL +NDSK+IS +KRE LY++I A+ + + Sbjct: 75 ICGIDEVGRGPLAGPVVAAAVILPKECDILYLNDSKQISAQKRELLYDEIMEKAVAVGVG 134 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 A+ ID NI A +A+ A+ L V P+ L D +IP D+P +IKGD++S Sbjct: 135 MANQDVIDDINILNADYEAMKQAISKLSVRPQLLLNDAVNIPGVDIP--QVGIIKGDTLS 192 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASIIAKVTRDRLM YP YGF ++GY TA+H + ++ GP IHR +F Sbjct: 193 ASIAAASIIAKVTRDRLMVEYDSIYPGYGFARNMGYGTAEHIKALETIGPCAIHRRSF 250 >gi|288800584|ref|ZP_06406042.1| ribonuclease HII [Prevotella sp. oral taxon 299 str. F0039] gi|288332797|gb|EFC71277.1| ribonuclease HII [Prevotella sp. oral taxon 299 str. F0039] Length = 214 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/181 (43%), Positives = 111/181 (61%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL N +NDSK+++ K+R L + I AI ++ Sbjct: 26 AGCDEAGRGCLAGSVYAAAVILPQNYSHPYLNDSKQLTEKRRMILRKDIEKDAIAWAVGV 85 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIP-EDLPCQAFAVIKGDSIS 143 S + ID+ NI KA+ A++ A++ L+V P + +IDG R P ++LP ++KGDS Sbjct: 86 VSPEEIDEINILKASFLAMHRAIDQLKVRPEALIIDGNRFTPYQNLPYTP--IVKGDSKY 143 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAASI+AK RD M H +YP Y + + GYPT H++ IK+ G + HR++F Sbjct: 144 LSIAAASILAKTYRDEYMEELHSQYPQYEWSKNKGYPTVAHREAIKKYGTTPFHRMSFNL 203 Query: 204 L 204 L Sbjct: 204 L 204 >gi|189464553|ref|ZP_03013338.1| hypothetical protein BACINT_00896 [Bacteroides intestinalis DSM 17393] gi|189438343|gb|EDV07328.1| hypothetical protein BACINT_00896 [Bacteroides intestinalis DSM 17393] Length = 201 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/181 (43%), Positives = 108/181 (59%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ +R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEHQRYALREVIEKEALAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143 S + IDK NI A+ A++ AV+ L++ P+ LIDG +DLP V+KGD Sbjct: 73 VSPEEIDKINILNASFLAMHRAVDQLKMRPQHLLIDGNRFKKYQDLPHTT--VVKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAASI+AK RD M H++YP Y ++ + GYPT KH+ I E+G + HR+TF Sbjct: 131 LSIAAASILAKTYRDDYMNRLHEEYPYYDWNHNKGYPTKKHRATIAERGTTPYHRMTFNL 190 Query: 204 L 204 L Sbjct: 191 L 191 >gi|111114868|ref|YP_709486.1| ribonuclease H [Borrelia afzelii PKo] gi|122956434|sp|Q0SPB8|RNH2_BORAP RecName: Full=Ribonuclease HII; Short=RNase HII gi|110890142|gb|ABH01310.1| ribonuclease H [Borrelia afzelii PKo] Length = 181 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 107/179 (59%), Gaps = 3/179 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDEVGRG + GP++ AA++ PN I ++DSKK++ +KRE L I ++ + Sbjct: 2 ICGIDEVGRGCIFGPILSAAVVFKKKPNFIK-ELDDSKKLTKEKREYLSSLILENSYYAF 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 S+ I+K NIH A+L A+ A ENL++ IDG+ +P+ A+IKGDSI Sbjct: 61 GEISNITIEKINIHNASLLAMQTAYENLKLNCNLVFIDGKFVPKISAKNVKAIIKGDSII 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR F+ Sbjct: 121 DEIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFK 179 >gi|194365030|ref|YP_002027640.1| Ribonuclease H [Stenotrophomonas maltophilia R551-3] gi|194347834|gb|ACF50957.1| Ribonuclease H [Stenotrophomonas maltophilia R551-3] Length = 224 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/197 (39%), Positives = 118/197 (59%), Gaps = 4/197 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREE 70 F+ A++ + + VAG+DE GRG LAGPV VAA++ DP G++DSK+++ +RE+ Sbjct: 14 FDGNAVIEPERL--VAGVDEAGRGPLAGPVAVAAVVFDPARPRINGLDDSKQLTAARREQ 71 Query: 71 LYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+++I A+ + ID+ NI++ATL + V + + A IDG +P+ L Sbjct: 72 LHDRIIERALAWHVVLVDVDTIDRLNIYQATLQGMRDVVAAVAHVAGFARIDGNVVPKGL 131 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A A++ GD I +I AASI+AKV+RDR M H ++P YGF+ H GY T H ++ Sbjct: 132 VLPAQALVGGDGIDRAIMAASILAKVSRDRYMLDVHSRHPQYGFEQHKGYGTPAHLAALR 191 Query: 190 EKGPSCIHRLTFRPLRN 206 E GP HR +F P+R Sbjct: 192 EHGPCVEHRRSFAPVRE 208 >gi|239617249|ref|YP_002940571.1| Ribonuclease H [Kosmotoga olearia TBF 19.5.1] gi|239506080|gb|ACR79567.1| Ribonuclease H [Kosmotoga olearia TBF 19.5.1] Length = 227 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 89/207 (42%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 M C + E F+ M EK +AG+DE GRG LAGPVV AA+IL G+ DS Sbjct: 1 MRCENTEELLDFD--RMYIEK-FGVIAGLDEAGRGPLAGPVVAAAVILGEK--IEGLFDS 55 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K ++ K REEL++KI A + I +S ID NI +AT A+ A++ L + P +I Sbjct: 56 KALTEKVREELFDKIIKKAKVGIGLSSPDEIDTFNIFEATKLAMNRAIKKLPIQPDYVII 115 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG+ + L + ++ GD S SIAAASI+AKV RDRLM+ YP+Y +D + GY Sbjct: 116 DGKHLK--LNNRGECIVSGDQKSASIAAASIVAKVFRDRLMKALAVLYPEYSWDKNKGYG 173 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNL 207 TA+H + +K GP+ HRLTF P++ L Sbjct: 174 TAEHLKALKIYGPTLWHRLTFSPVKAL 200 >gi|78185903|ref|YP_373946.1| ribonuclease H [Chlorobium luteolum DSM 273] gi|97189134|sp|Q3B6X8|RNH2_PELLD RecName: Full=Ribonuclease HII; Short=RNase HII gi|78165805|gb|ABB22903.1| RNase HII [Chlorobium luteolum DSM 273] Length = 208 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 83/201 (41%), Positives = 116/201 (57%), Gaps = 11/201 (5%) Query: 18 VREKNMWP----VAGIDEVGRGALAGPVVVAAI----ILDPN-NIPFGINDSKKISHKKR 68 VRE +W V GIDE GRG LAGPVV AA+ P+ I +NDSKK++ R Sbjct: 7 VREYLLWNDFLRVCGIDEAGRGPLAGPVVAAAVVFPRWFSPDEGILRRLNDSKKLTPSLR 66 Query: 69 EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 EL I A ++ + H+ ID+ NI +AT+ A+ A E+L P LIDG Sbjct: 67 RELAPAIREEAECWAVEAVDHETIDRINILRATMLAMNRAAESLPRQPDLLLIDGNRFTP 126 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 ++P ++ GD++ SIAAAS++AK RDR+M ++YP+YGF+ + GY T +H + Sbjct: 127 NIPVPYQTIVGGDALVFSIAAASVLAKTERDRMMEEYAERYPEYGFERNAGYGTREHVEA 186 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 I+ G S IHR +FR LR L Sbjct: 187 IRRHGRSPIHRTSFR-LRQLG 206 >gi|294085233|ref|YP_003551993.1| Ribonuclease H [Candidatus Puniceispirillum marinum IMCC1322] gi|292664808|gb|ADE39909.1| Ribonuclease H [Candidatus Puniceispirillum marinum IMCC1322] Length = 230 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 82/198 (41%), Positives = 116/198 (58%), Gaps = 21/198 (10%) Query: 28 GIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 GIDE GRG AGPV VAA+ LDP +++P G++DSKK+ KR LY+ +T++ I S+ Sbjct: 26 GIDEAGRGPWAGPVTVAAVWLDPKCYDDLPAGLDDSKKLKADKRAALYDALTTNTHIYSV 85 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENL-----QVIPRSAL---IDGRSIPEDLPC---- 131 S ID NI + TL A++ E+L Q +SAL +DG +P +P Sbjct: 86 ISVPPAIIDAGNILQVTLQAMHDCAEDLAGQLAQAGYKSALHMLVDGSIMPP-IPAPPVD 144 Query: 132 ----QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 AVI GD +SLSIAAASIIAK TRD +M YP YG+ +++GY T HQ+ Sbjct: 145 GGLFTGEAVIGGDGLSLSIAAASIIAKHTRDGIMTELDAAYPGYGWATNMGYGTKAHQEG 204 Query: 188 IKEKGPSCIHRLTFRPLR 205 + G + HR +++P++ Sbjct: 205 LATLGVTPHHRKSYKPVK 222 >gi|169338113|ref|ZP_02622674.2| ribonuclease HII [Clostridium botulinum C str. Eklund] gi|169294134|gb|EDS76267.1| ribonuclease HII [Clostridium botulinum C str. Eklund] Length = 272 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 84/202 (41%), Positives = 116/202 (57%), Gaps = 18/202 (8%) Query: 17 MVREKNMWP-----------VAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDS 60 ++R +NM+ +AG DEVGRG LAGP+V A+++LD +N+ INDS Sbjct: 64 IIRVRNMYEFDKKYINGGTYLAGADEVGRGPLAGPIVAASVVLDLDTINDDNLILRINDS 123 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KKIS + REEL + I A+ SI S++ IDK I + + +V L++ P L Sbjct: 124 KKISFEVREELSKIIRKRAVSYSIQEISNEEIDKKGIAWCNNEVLKRSVCELKISPDLVL 183 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 DG I F V+KGD+ S SIA ASIIAKV RD LM K YP+Y F+ ++GY Sbjct: 184 SDGYKIKNCTISNEF-VVKGDAKSASIACASIIAKVYRDNLMIEYSKIYPEYMFNKNMGY 242 Query: 180 PTAKHQQVIKEKGPSCIHRLTF 201 T +H + IK+ G + IHR +F Sbjct: 243 GTKEHIEAIKKFGCTPIHRKSF 264 >gi|150003938|ref|YP_001298682.1| ribonuclease HII [Bacteroides vulgatus ATCC 8482] gi|254880820|ref|ZP_05253530.1| ribonuclease HII [Bacteroides sp. 4_3_47FAA] gi|294775094|ref|ZP_06740623.1| ribonuclease HII [Bacteroides vulgatus PC510] gi|319639832|ref|ZP_07994561.1| ribonuclease HII [Bacteroides sp. 3_1_40A] gi|166225169|sp|A6L046|RNH2_BACV8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|149932362|gb|ABR39060.1| ribonuclease HII [Bacteroides vulgatus ATCC 8482] gi|254833613|gb|EET13922.1| ribonuclease HII [Bacteroides sp. 4_3_47FAA] gi|294451138|gb|EFG19609.1| ribonuclease HII [Bacteroides vulgatus PC510] gi|317388496|gb|EFV69346.1| ribonuclease HII [Bacteroides sp. 3_1_40A] Length = 201 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/181 (42%), Positives = 109/181 (60%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ +R L E + A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPVDFKNELLNDSKQLTEHQRYALREIVEREALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143 + + ID+ NI A+ A++ AV+ L++ P+ LIDG +DLP V+KGD Sbjct: 73 VTPEEIDEINILNASFLAMHRAVDQLKIRPQHLLIDGNRFKKYQDLPHTT--VVKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAASI+AK RD M HK+YP Y ++S+ GYPT KH+ I+E G + HR+TF Sbjct: 131 LSIAAASILAKTYRDDYMNELHKEYPFYDWNSNKGYPTKKHRAAIREHGTTPYHRMTFNL 190 Query: 204 L 204 L Sbjct: 191 L 191 >gi|265754659|ref|ZP_06089711.1| ribonuclease HII [Bacteroides sp. 3_1_33FAA] gi|263234773|gb|EEZ20341.1| ribonuclease HII [Bacteroides sp. 3_1_33FAA] Length = 201 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/181 (42%), Positives = 109/181 (60%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ +R L E + A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPVDFKNELLNDSKQLTEHQRYALREIVEKEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143 + + ID+ NI A+ A++ AV+ L++ P+ LIDG +DLP V+KGD Sbjct: 73 VTPEEIDEINILNASFLAMHRAVDQLKIRPQHLLIDGNRFKKYQDLPHTT--VVKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAASI+AK RD M HK+YP Y ++S+ GYPT KH+ I+E G + HR+TF Sbjct: 131 LSIAAASILAKTYRDDYMNGLHKEYPFYDWNSNKGYPTKKHRAAIREHGTTPYHRMTFNL 190 Query: 204 L 204 L Sbjct: 191 L 191 >gi|260172441|ref|ZP_05758853.1| ribonuclease HII [Bacteroides sp. D2] gi|315920736|ref|ZP_07916976.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694611|gb|EFS31446.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 200 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 105/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI +A+ A++ AV+ L P+ LIDG + V+KGD LS Sbjct: 73 VSPEEIDEINILRASFLAMHRAVDQLSTRPQHLLIDGNRFTKYPGVPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H+++P Y +D + GYPT KH+ I E+G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTFNLL 191 >gi|34497665|ref|NP_901880.1| ribonuclease HII [Chromobacterium violaceum ATCC 12472] gi|39932273|sp|Q7NPS3|RNH2_CHRVO RecName: Full=Ribonuclease HII; Short=RNase HII gi|34331005|gb|AAQ64053.1| ribonuclease HII [Chromobacterium violaceum ATCC 12472] Length = 198 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 83/181 (45%), Positives = 109/181 (60%), Gaps = 1/181 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DE GRG LAG V AA+ILDP G+ DSK +S +R+EL I A+ ++ Sbjct: 7 VAGVDEAGRGPLAGAVFAAAVILDPAKPIAGLADSKVLSEAQRDELAVLIKRDALAWCVA 66 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS + IDK NI AT+ A+ AVE L V P A IDG +P+ LP A++KGD+ Sbjct: 67 SASVEEIDKLNILHATMLAMTRAVEGLPVRPDLAQIDGNRVPKHLPVPGEAIVKGDAKVA 126 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AK RD + +P YGF H GYPTA+H I+ G HR TF P+ Sbjct: 127 AISAASILAKTARDAELVALDALHPQYGFARHKGYPTAEHLAAIEAHGVLPAHRKTFGPV 186 Query: 205 R 205 + Sbjct: 187 K 187 >gi|160883918|ref|ZP_02064921.1| hypothetical protein BACOVA_01892 [Bacteroides ovatus ATCC 8483] gi|237720405|ref|ZP_04550886.1| ribonuclease HII [Bacteroides sp. 2_2_4] gi|156110648|gb|EDO12393.1| hypothetical protein BACOVA_01892 [Bacteroides ovatus ATCC 8483] gi|229450156|gb|EEO55947.1| ribonuclease HII [Bacteroides sp. 2_2_4] Length = 200 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 105/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI +A+ A++ AV+ L P+ LIDG + V+KGD LS Sbjct: 73 VSPEEIDEINILRASFLAMHRAVDQLTTRPQHLLIDGNRFTKYPGVPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H+++P Y +D + GYPT KH+ I E+G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTFNLL 191 >gi|257066780|ref|YP_003153036.1| Ribonuclease H [Anaerococcus prevotii DSM 20548] gi|256798660|gb|ACV29315.1| Ribonuclease H [Anaerococcus prevotii DSM 20548] Length = 209 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/177 (42%), Positives = 106/177 (59%), Gaps = 3/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AGIDEVGRG LAGPVV A+I+ ++ G+ DSKK++ KK L EKI AI + Sbjct: 21 IAGIDEVGRGPLAGPVVTCAVIMKRDSNIGGVTDSKKLTRKKMLSLKEKILDDAIDFAYG 80 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A+ ID+ NI AT A+ A+ L++ P LID I D+P ++KGD Sbjct: 81 YANPSLIDELNIKNATHKAMEDALNKLKIRPEIVLIDAERINTDIP--QMNIVKGDLNEY 138 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I+ ASI+AKV RD +M K YP Y F++++GY T KH + +++ G + IHR TF Sbjct: 139 VISCASILAKVRRDDIMINFSKIYPGYSFETNMGYGTKKHYEGLEKYGETPIHRQTF 195 >gi|29348821|ref|NP_812324.1| ribonuclease HII [Bacteroides thetaiotaomicron VPI-5482] gi|253568833|ref|ZP_04846243.1| ribonuclease HII [Bacteroides sp. 1_1_6] gi|298387905|ref|ZP_06997454.1| ribonuclease HII [Bacteroides sp. 1_1_14] gi|39932389|sp|Q8A293|RNH2_BACTN RecName: Full=Ribonuclease HII; Short=RNase HII gi|29340727|gb|AAO78518.1| ribonuclease HII [Bacteroides thetaiotaomicron VPI-5482] gi|251840852|gb|EES68933.1| ribonuclease HII [Bacteroides sp. 1_1_6] gi|298259312|gb|EFI02187.1| ribonuclease HII [Bacteroides sp. 1_1_14] Length = 200 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/181 (43%), Positives = 108/181 (59%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143 S + ID+ NI +A+ A++ AV+ L V P+ LIDG + D+P VIKGD Sbjct: 73 VSPEEIDEINILRASFLAMHRAVDQLSVRPQHLLIDGNRFNKYPDIPHTT--VIKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAASI+AK RD M H++YP Y ++ + GYPT KH+ I E G + HR+TF Sbjct: 131 LSIAAASILAKTYRDDYMNRLHEEYPFYDWNKNKGYPTKKHRAAIAEHGTTPYHRMTFNL 190 Query: 204 L 204 L Sbjct: 191 L 191 >gi|116750425|ref|YP_847112.1| ribonuclease HII [Syntrophobacter fumaroxidans MPOB] gi|116750467|ref|YP_847154.1| ribonuclease HII [Syntrophobacter fumaroxidans MPOB] gi|189043668|sp|A0LMM5|RNH2_SYNFM RecName: Full=Ribonuclease HII; Short=RNase HII gi|116699489|gb|ABK18677.1| Ribonuclease H [Syntrophobacter fumaroxidans MPOB] gi|116699531|gb|ABK18719.1| RNase HII [Syntrophobacter fumaroxidans MPOB] Length = 233 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 92/198 (46%), Positives = 116/198 (58%), Gaps = 8/198 (4%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 HFE +A + VAGIDEVGRG LAGPVV AA+++ G+ DSKK+S +RE Sbjct: 15 HFEKQAY--RQGFQLVAGIDEVGRGPLAGPVVAAAVVVPAGVRLPGVADSKKLSAGQRES 72 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 E I S + I ID+ NI +AT A+ AV L+ P LIDG P +L Sbjct: 73 CCEDILSCGCDVGIGRVEPSEIDRVNILQATFQAMIAAVAGLKTPPHCLLIDG---PYEL 129 Query: 130 PC--QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 P + +GD+ SLSIAAASI+AKV RDRLM H KYP YGFD + GY TA+H Sbjct: 130 PLFIAQKGIPQGDAKSLSIAAASIVAKVHRDRLMCEYHLKYPVYGFDRNKGYGTARHLDA 189 Query: 188 IKEKGPSCIHRLTFRPLR 205 ++ GP IHRL+F +R Sbjct: 190 LRRYGPCPIHRLSFGGVR 207 >gi|295098996|emb|CBK88085.1| RNase HII [Eubacterium cylindroides T2-87] Length = 202 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/183 (42%), Positives = 106/183 (57%), Gaps = 4/183 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 V GIDE GRG +AGP+VVA + + I+DSKK++ KKRE L+ IT+ A+ I Sbjct: 17 VLGIDEAGRGPIAGPLVVAGVCFEKGFTNEMIDDSKKLTEKKREALFSLITNEALWYQIL 76 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + IDK NI++ T +A+ N V L D +P L + +VIKGD SL Sbjct: 77 VIEEKIIDKKNIYRTTQEAMLEIAHNAPV--DIVLSDAMPLPS-LDKEWESVIKGDQKSL 133 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASI+AKVTRDR M+ + YP YGF H GYPT H + + G HR ++ P+ Sbjct: 134 SIAAASILAKVTRDRYMKKLDELYPMYGFSKHKGYPTKAHIEALNIYGVLDCHRRSYGPV 193 Query: 205 RNL 207 + + Sbjct: 194 QKM 196 >gi|326803548|ref|YP_004321366.1| ribonuclease HII [Aerococcus urinae ACS-120-V-Col10a] gi|326651055|gb|AEA01238.1| ribonuclease HII [Aerococcus urinae ACS-120-V-Col10a] Length = 258 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 81/195 (41%), Positives = 122/195 (62%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 ++EA + K +AG+DEVGRG LAGPVV AA+IL P F + DSK++S +R+ L Sbjct: 64 QIEADLHAKGFQYIAGVDEVGRGPLAGPVVTAAVILKPKRPLFDLRDSKQLSQVQRQNLI 123 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I +++ I+I ++ ID++NI AT ++ ++++ L LID + ++P Sbjct: 124 PLIKENSVAIAIDVQDNEAIDRYNILNATKRSMMNSIKKLSPQAEYVLIDAVDLSLNIPH 183 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGD +IAAASIIAK RD++MR K+YP YGFD +VGY T +H + I+ Sbjct: 184 SS--LIKGDDRVSAIAAASIIAKEYRDQIMRDYAKRYPAYGFDRNVGYGTKEHLKAIETY 241 Query: 192 GPSCIHRLTFRPLRN 206 GP IHR +F P++N Sbjct: 242 GPCPIHRKSFAPIKN 256 >gi|212692764|ref|ZP_03300892.1| hypothetical protein BACDOR_02262 [Bacteroides dorei DSM 17855] gi|237724942|ref|ZP_04555423.1| ribonuclease HII [Bacteroides sp. D4] gi|212664700|gb|EEB25272.1| hypothetical protein BACDOR_02262 [Bacteroides dorei DSM 17855] gi|229436680|gb|EEO46757.1| ribonuclease HII [Bacteroides dorei 5_1_36/D4] Length = 201 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/181 (42%), Positives = 109/181 (60%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ +R L E + A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPVDFKNELLNDSKQLTEHQRYALREIVEREALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143 + + ID+ NI A+ A++ AV+ L++ P+ LIDG +DLP V+KGD Sbjct: 73 VTPEEIDEINILNASFLAMHRAVDQLKIRPQHLLIDGNRFKKYQDLPHTT--VVKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAASI+AK RD M HK+YP Y ++S+ GYPT KH+ I+E G + HR+TF Sbjct: 131 LSIAAASILAKTYRDDYMNGLHKEYPFYDWNSNKGYPTKKHRAAIREYGTTPYHRMTFNL 190 Query: 204 L 204 L Sbjct: 191 L 191 >gi|160892722|ref|ZP_02073512.1| hypothetical protein CLOL250_00252 [Clostridium sp. L2-50] gi|156865763|gb|EDO59194.1| hypothetical protein CLOL250_00252 [Clostridium sp. L2-50] Length = 257 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 89/178 (50%), Positives = 114/178 (64%), Gaps = 4/178 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG LAGPVV AA+IL N +NDSK++S KKREELY++IT A+ I Sbjct: 75 ICGIDEVGRGPLAGPVVAAAVILPENCDILYLNDSKQLSEKKREELYDEITEKAVAYGIG 134 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 A + ID+ NI A +A+ A+ L V P L D IPE ++P ++IKGD+ S Sbjct: 135 MADEKLIDQINILNADYEAMRIAIHKLAVKPDLLLNDAVRIPEVEIP--QVSIIKGDAKS 192 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASIIAKVTRDRLM + YP YGF + GY + +H + +K GP IHR +F Sbjct: 193 ASIAAASIIAKVTRDRLMVAYDEIYPGYGFAKNKGYGSKEHIEALKTIGPCEIHRRSF 250 >gi|281422598|ref|ZP_06253597.1| ribonuclease HII [Prevotella copri DSM 18205] gi|281403268|gb|EFB33948.1| ribonuclease HII [Prevotella copri DSM 18205] Length = 215 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 73/181 (40%), Positives = 109/181 (60%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL P +NDSKK++ KKR+ L E+I A+ ++ Sbjct: 26 AGCDEAGRGCLAGSVYAAAVILPPGYQNAELNDSKKLTDKKRKALREQIERDAVAWAVGI 85 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143 + + IDK NI A+ A++ A++ L+V P + ++DG +DLP ++KGD Sbjct: 86 VTPEEIDKINILNASFLAMHRALDQLKVRPEAVIVDGNRFKPYKDLPYTT--IVKGDGKY 143 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 ++IAAASI+AK RD M ++YP Y + + GYPT KH+ I+E G + HR+++ Sbjct: 144 MAIAAASILAKTYRDDYMDALAEEYPQYDWKGNKGYPTKKHRAAIREFGVTPYHRMSYNL 203 Query: 204 L 204 L Sbjct: 204 L 204 >gi|326575992|gb|EGE25915.1| ribonuclease HII [Moraxella catarrhalis CO72] Length = 248 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 87/208 (41%), Positives = 114/208 (54%), Gaps = 25/208 (12%) Query: 25 PVAGIDEVGRGALAGPVVVAAIIL-----------DPNNIPFGI-NDSKKISHKKREELY 72 P+ GIDEVGRG L G + V A+IL D N + NDSKK+S K+RE+L+ Sbjct: 28 PIVGIDEVGRGTLFGNMTVGAVILPNELSGRFDEIDLTNTKISLLNDSKKLSEKRREQLF 87 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVE------NLQVIPRSALIDGRSI 125 + IT A+ +I ID+ NI++AT+ + A+E NL + LIDG + Sbjct: 88 DIITDLALDYAIVDVPSTIIDQINIYQATMLGMKIAIETIIIKNNLNEKNTTILIDGNQL 147 Query: 126 PE------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P + Q +A+IKGD+ SIA ASI+AKV RDRLM K YP Y D H GY Sbjct: 148 PSMDGSLGEHFHQIYAMIKGDATHSSIACASILAKVHRDRLMIQHAKSYPKYLLDKHKGY 207 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 TAKH+ I E G HR +F P+R L Sbjct: 208 LTAKHKAAILEYGILPEHRRSFSPIREL 235 >gi|320159510|ref|YP_004172734.1| ribonuclease HII [Anaerolinea thermophila UNI-1] gi|319993363|dbj|BAJ62134.1| ribonuclease HII [Anaerolinea thermophila UNI-1] Length = 224 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 84/209 (40%), Positives = 123/209 (58%), Gaps = 7/209 (3%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDS 60 +P P E + + + VAG+DE GRGA AGPV AA+IL + G+ DS Sbjct: 9 LPHDPTLAFEQSLWQAGVLHVAGVDEAGRGAWAGPVAAAAVILPSGDSALLERLHGVRDS 68 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 K+++ K RE E I +A+ + AS + I+ I AT A+ A++ + P L Sbjct: 69 KQMTAKAREGFAEVIRQTALAWGVGFASVEEIETQGIVPATRLAMMRALQACALSPTHLL 128 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 ID +PE +P ++IKGD+ SLSIAAAS++AK RD LMR ++YP YGF+ H GY Sbjct: 129 IDALRLPE-IPLPQTSLIKGDARSLSIAAASVLAKTARDALMRDLARQYPQYGFELHKGY 187 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNLS 208 TA+H+ +++ GP +HR T+RP+ +LS Sbjct: 188 GTARHRAALEQWGPCPLHRRTYRPVMHLS 216 >gi|282879385|ref|ZP_06288128.1| ribonuclease HII [Prevotella buccalis ATCC 35310] gi|281298498|gb|EFA90924.1| ribonuclease HII [Prevotella buccalis ATCC 35310] Length = 203 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 76/181 (41%), Positives = 110/181 (60%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL PN +NDSK++S KKR+ L + I + A+ ++ Sbjct: 16 AGCDEAGRGCLAGSVFAAAVILPPNYDNADLNDSKQLSRKKRDALRQAIINDAVAWAVGE 75 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIP-EDLPCQAFAVIKGDSIS 143 + Q ID+ NI +A+ A++ A++ L P++ ++DG R P DLP +IKGD Sbjct: 76 VTPQEIDEINILRASFLAMHRALDQLTTRPQAIIVDGNRFTPYHDLPYTT--IIKGDGKY 133 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 IAAASI+AK RD M ++YP Y + S++GYPT KH++ I+ G + HR +F Sbjct: 134 QDIAAASILAKTFRDDYMDRLAQEYPQYDWQSNMGYPTRKHREAIRAYGITPYHRRSFNL 193 Query: 204 L 204 L Sbjct: 194 L 194 >gi|70726670|ref|YP_253584.1| ribonuclease HII [Staphylococcus haemolyticus JCSC1435] gi|97189319|sp|Q4L5U7|RNH2_STAHJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|68447394|dbj|BAE04978.1| ribonuclease HII [Staphylococcus haemolyticus JCSC1435] Length = 255 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 75/184 (40%), Positives = 113/184 (61%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG LAGPVV A+IL+ + G++DSKK++ KR+ L +K+ + + Sbjct: 74 ICGIDEVGRGPLAGPVVACAVILNEGHRYLGLDDSKKVTASKRQILNKKLKDGVLEYAYG 133 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID+ NI+ AT A+ A+ L P LID S+ +P ++IKGD+ S+ Sbjct: 134 LASPEEIDELNIYNATQVAMNRALSQLVNRPDHLLIDAMSLDTTIP--QTSIIKGDAKSV 191 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASI+AK RD LM+ +YP Y F+ +VGY T H + + G + HR +F P+ Sbjct: 192 SIAAASIMAKEYRDDLMKEIADEYPGYEFEKNVGYGTKAHLDGLNKLGITPYHRKSFEPI 251 Query: 205 RNLS 208 ++++ Sbjct: 252 KSMT 255 >gi|167756891|ref|ZP_02429018.1| hypothetical protein CLORAM_02440 [Clostridium ramosum DSM 1402] gi|167703066|gb|EDS17645.1| hypothetical protein CLORAM_02440 [Clostridium ramosum DSM 1402] Length = 206 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 75/185 (40%), Positives = 114/185 (61%), Gaps = 8/185 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI---IS 82 + G+DE GRG +AG +VVA ++ INDSK++S KKRE LY+ I +A+ I Sbjct: 18 IIGLDEAGRGPMAGELVVAGVVFPKGFYDERINDSKQLSAKKREVLYDLIIENALYYDIE 77 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I S + +D+ N+++A+ + +E L+ AL D ++P D P ++IKGD+ Sbjct: 78 IISVAD--VDRLNVYQASKQGMEKCLELLKKEKMFALTD--AMPIDYP-DHLSIIKGDAK 132 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 S+SIA ASI+AKVTRDRLM +YP+YGF+ H GY T H++ + + G IHR +F Sbjct: 133 SISIAGASILAKVTRDRLMEAYALEYPEYGFEKHKGYVTKAHKEALGKYGVCPIHRKSFG 192 Query: 203 PLRNL 207 P++ + Sbjct: 193 PVQKI 197 >gi|218295991|ref|ZP_03496771.1| Ribonuclease H [Thermus aquaticus Y51MC23] gi|218243729|gb|EED10257.1| Ribonuclease H [Thermus aquaticus Y51MC23] Length = 200 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/191 (41%), Positives = 109/191 (57%), Gaps = 9/191 (4%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 E W VAG+DE GRGA AGP+VV A+IL P PF DSK ++ K RE L E++ Sbjct: 5 EAGFWALGLRVAGVDEAGRGAWAGPIVVGAVILPPGRYPF--KDSKLLTPKAREALAEEV 62 Query: 76 TSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A+ ++ A + +D+ +++ATL A A+ L + P + + D +P P Sbjct: 63 RRVALAHALGLAEVEEVDRLGVYRATLLAAKRALSALALPPEALVTD--YLPLSTPLPLL 120 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 A + D S S+AAASI+AKV RDRLM + YP YGF H GY T +HQ+ + GPS Sbjct: 121 APPRADRESPSVAAASILAKVHRDRLMAELDRLYPGYGFAQHKGYGTPEHQEALLALGPS 180 Query: 195 CIHRLTFRPLR 205 +HR F P+R Sbjct: 181 PVHRRRFTPVR 191 >gi|224534867|ref|ZP_03675436.1| ribonuclease HII [Borrelia spielmanii A14S] gi|224513807|gb|EEF84132.1| ribonuclease HII [Borrelia spielmanii A14S] Length = 181 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 108/179 (60%), Gaps = 3/179 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDEVGRG + GP++ AA++ PN I ++DSKK+ +KRE L I ++ + Sbjct: 2 ICGIDEVGRGCIFGPILSAAVVFKKKPNFIK-ELDDSKKLKKEKREYLSSLILENSYYAF 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S+ I+K NIH A+L A+ A ENL++ +DG+ +P+ A+IKGDSI Sbjct: 61 AEISNITIEKINIHNASLLAMQTAYENLKLNCSLVFVDGKFVPKITAKTVKAIIKGDSII 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR +F+ Sbjct: 121 DEIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKHGVLSLHRKSFK 179 >gi|170743460|ref|YP_001772115.1| ribonuclease H [Methylobacterium sp. 4-46] gi|168197734|gb|ACA19681.1| Ribonuclease H [Methylobacterium sp. 4-46] Length = 209 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/191 (41%), Positives = 113/191 (59%), Gaps = 6/191 (3%) Query: 17 MVREKNMWP-VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREEL 71 + RE +P + G DEVGRGAL GPV+VAA+ DP +P ++DSK++ R L Sbjct: 6 LAREAARYPALIGCDEVGRGALCGPVIVAAVHFDPAALPPDLLEALDDSKRLDAATRARL 65 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++ + A I+ + AS ID+ N+ ATLDA+ AV L + A +DGR P L Sbjct: 66 AARLPALARIAYAGASRDLIDRINVRAATLDAMARAVLRLGLAGPVA-VDGRDRPPGLDG 124 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + AVI G+ + IAAASI+AKV RDRLM + +++P Y + + GY TA H+ + + Sbjct: 125 RVRAVIGGERLVPQIAAASILAKVLRDRLMAVLARRHPAYAWARNAGYGTAAHRAALLRE 184 Query: 192 GPSCIHRLTFR 202 GPS HR +FR Sbjct: 185 GPSPHHRRSFR 195 >gi|74316817|ref|YP_314557.1| RNase HII [Thiobacillus denitrificans ATCC 25259] gi|97189444|sp|Q3SKM7|RNH2_THIDA RecName: Full=Ribonuclease HII; Short=RNase HII gi|74056312|gb|AAZ96752.1| ribonuclease H [Thiobacillus denitrificans ATCC 25259] Length = 204 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 80/183 (43%), Positives = 109/183 (59%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + G+DE GRG LAGPVV AA++LDP G+ DSKK++ RE L ++I + A+ ++ Sbjct: 16 LCGVDEAGRGPLAGPVVAAAVMLDPKRPIKGLRDSKKLTPAARERLADEIRARALAWCVA 75 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID+ NI AT+ A+ AV + P +DG PE ++ AV++GD Sbjct: 76 EASVAEIDRLNILHATMLAMQRAVAGMSHAPDDVWVDGDRCPE-WTWRSQAVVQGDDKVA 134 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AK RD LMR H+ YP YGF H+GY TA H +K G HR +F P+ Sbjct: 135 AIAAASILAKTVRDELMRGLHEAYPLYGFAQHMGYATAAHLAALKANGACPHHRRSFAPV 194 Query: 205 RNL 207 R L Sbjct: 195 RLL 197 >gi|282896399|ref|ZP_06304420.1| Ribonuclease HII/HIII [Raphidiopsis brookii D9] gi|281198687|gb|EFA73567.1| Ribonuclease HII/HIII [Raphidiopsis brookii D9] Length = 210 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 88/209 (42%), Positives = 118/209 (56%), Gaps = 9/209 (4%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPF 55 M S+ E EL +K W VAG+DEVGRGAL GPVV AA+IL PN+ + Sbjct: 1 MHKGSVKESNWQELSDHWHQKG-W-VAGVDEVGRGALFGPVVAAAVIL-PNSALSILVES 57 Query: 56 GINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVI 114 I DSK++S R L ++I A+ I A+ ID+ NI +ATL A+ AV L+ Sbjct: 58 KIKDSKQLSVSHRRYLAQQIAQLAVEWKIGYATTAEIDRLNILQATLLAMKRAVLKLKSQ 117 Query: 115 PRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174 P L+DG DL + A+I+GD SL+IAAASI+AKV RD L+ KKY Y Sbjct: 118 PSLCLVDGNQFIRDLLIEQQAIIQGDRRSLNIAAASIMAKVWRDDLVVRLGKKYDMYDLH 177 Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + GY + KH +++ G S +HR +F P Sbjct: 178 QNKGYGSQKHLLALQKHGASPLHRQSFSP 206 >gi|167764134|ref|ZP_02436261.1| hypothetical protein BACSTE_02517 [Bacteroides stercoris ATCC 43183] gi|167698250|gb|EDS14829.1| hypothetical protein BACSTE_02517 [Bacteroides stercoris ATCC 43183] Length = 201 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 105/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEALAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S IDK NI A+ A++ AV+ LQ+ P+ LIDG + V+KGD LS Sbjct: 73 VSPGEIDKINILNASFLAMHRAVDRLQLRPQHLLIDGNRFKKYRDIPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H+++P Y ++ + GYPT KH+ I E+G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWNHNKGYPTKKHRAAIAERGTTPYHRMTFNLL 191 >gi|332828692|gb|EGK01384.1| ribonuclease HII [Dysgonomonas gadei ATCC BAA-286] Length = 199 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 78/178 (43%), Positives = 104/178 (58%), Gaps = 5/178 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL + +NDSK+++ K+R L I A+ ++ Sbjct: 13 AGCDEAGRGCLAGPVFAAAVILPKDFECEKLNDSKQLTEKERYNLRPLIEERALAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143 H+ IDK NI A+ A+ AV +L++ P+ LIDG ED+P V+KGD Sbjct: 73 VDHKEIDKINILNASFLAMQRAVASLKIRPQHLLIDGNRFKKYEDIPHTC--VVKGDGKL 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 L IAAAS++AK RD M H +YP Y +D + GYPT KH+ IK G + HRLTF Sbjct: 131 LPIAAASVLAKTYRDDYMEKLHGEYPLYDWDHNKGYPTKKHRLAIKAYGVTPYHRLTF 188 >gi|148292195|dbj|BAF62910.1| putative ribonuclease H [uncultured bacterium] Length = 229 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 80/219 (36%), Positives = 119/219 (54%), Gaps = 19/219 (8%) Query: 2 FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGIN 58 F ++ + P + LE+ V G+DE GRG AGPV AA + P +++P + Sbjct: 9 FNDTASDLPDYTLESAASGNGA--VIGVDEAGRGPWAGPVTAAAFWIYPAAKDSLPASLT 66 Query: 59 DSKKISHKKREELYEKIT---SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP 115 DSKK+S KR+++ + + S + ++ +S ID I AT A+ AV L Sbjct: 67 DSKKLSASKRQQIEQALCAPHSQHLWAVKHSSVNQIDTCGILPATFAAMAEAVAELAKTL 126 Query: 116 RS--------ALIDGRSIPE-DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 + L+DG +P D PCQA V++GDS SLSIAAASI+AK +RD +M Sbjct: 127 QKRHNLPVAMVLVDGNLLPPLDFPCQA--VVRGDSRSLSIAAASILAKQSRDEVMTELAS 184 Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 YPDYG+ ++ GY T HQQ ++ G + HR +F P++ Sbjct: 185 HYPDYGWQTNAGYGTKAHQQALQRCGITPHHRKSFAPIK 223 >gi|88801501|ref|ZP_01117029.1| ribonuclease HII [Polaribacter irgensii 23-P] gi|88782159|gb|EAR13336.1| ribonuclease HII [Polaribacter irgensii 23-P] Length = 196 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 74/182 (40%), Positives = 111/182 (60%), Gaps = 7/182 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-ISIS 84 AG DE GRG L GPVV AA+IL + PF +NDSK +S KKRE + I +A+ S+S Sbjct: 13 AGTDEAGRGCLCGPVVAAAVILSKDFTHPF-LNDSKLLSEKKREAVRPFIEENALAFSVS 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSI 142 Q +D+ N+ +A+++ ++ A+ L++ P ++DG + ++P Q ++KGDS Sbjct: 72 FIWQQEVDEINVLQASIEGMHRAIAGLKITPEFIIVDGNKFRDYKEIPHQT--IVKGDSK 129 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 LSIAAAS++AK RD M H ++P Y + + GYPT +H+ I+ G + HR TFR Sbjct: 130 YLSIAAASVLAKTYRDDYMAKIHLEFPMYNWAKNKGYPTKEHRNAIRNFGATEYHRKTFR 189 Query: 203 PL 204 L Sbjct: 190 LL 191 >gi|303235632|ref|ZP_07322239.1| ribonuclease HII [Prevotella disiens FB035-09AN] gi|302484079|gb|EFL47067.1| ribonuclease HII [Prevotella disiens FB035-09AN] Length = 202 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 75/181 (41%), Positives = 110/181 (60%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL PN +NDSK++S KKR +L I AI ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPPNYENELLNDSKQLSEKKRYQLRSIIEKDAIAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143 + + ID+ NI A++ A++ A++ L+ P + ++DG +DLP ++KGD Sbjct: 73 VTAEEIDEINILNASILAMHRALDGLKTRPEAVIVDGNRFKPYKDLPYST--IVKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAASI+AK RD M+ ++YP Y + S+ GYPT KH++ I++ G + HR +F Sbjct: 131 LSIAAASILAKTYRDDYMKGLAEEYPQYDWKSNKGYPTKKHREAIRQHGITPYHRKSFTL 190 Query: 204 L 204 L Sbjct: 191 L 191 >gi|323341686|ref|ZP_08081919.1| ribonuclease HII [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464111|gb|EFY09304.1| ribonuclease HII [Erysipelothrix rhusiopathiae ATCC 19414] Length = 204 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 74/189 (39%), Positives = 115/189 (60%), Gaps = 10/189 (5%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 E N W V GIDE GRG +AGP VV+ +I INDSK++S K+R+EL I Sbjct: 9 EVNYWEQGKLVVGIDEAGRGPMAGPCVVSGVIFPKGYYDARINDSKQLSEKQRDELVSNI 68 Query: 76 TSSAIISISSA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-EDLPCQA 133 S+A+ + + ID+ NI++AT +A++ + + ++ ++ ++P +D+ Sbjct: 69 ESNALWTFTEIIPVDIIDRDNIYRAT----QNAMKKIAIESKADIVLTDAMPLDDIAIPV 124 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 A++KGD+ SLSIAAASI+AK RD LM++ ++P+YGF H GY T +H++ I + G Sbjct: 125 EAIVKGDARSLSIAAASILAKTVRDGLMKVYDLEFPEYGFAKHKGYGTKQHKEAILKFGR 184 Query: 194 SCIHRLTFR 202 IHR +FR Sbjct: 185 CPIHRKSFR 193 >gi|53803396|ref|YP_114857.1| ribonuclease HII [Methylococcus capsulatus str. Bath] gi|81681269|sp|Q604U3|RNH2_METCA RecName: Full=Ribonuclease HII; Short=RNase HII gi|53757157|gb|AAU91448.1| ribonuclease HII [Methylococcus capsulatus str. Bath] Length = 193 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 75/181 (41%), Positives = 102/181 (56%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAGIDEVGRG +AGPV+ AA+I P G+ DSK++ +R L +I S ++ ++ Sbjct: 5 VAGIDEVGRGCIAGPVIAAAVIFAPGQDTHGLADSKRLRPDRRLVLAGRICSESLAWAVG 64 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI +AT A+ AV L V+P +DG P L C A++ GD+ Sbjct: 65 RAEVSEIDQLNILRATHLAMCRAVAALPVLPDWVRVDGNRYPP-LDCPGEAIVGGDASVA 123 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AKV RDR M + + P Y H GYPT H + +G S HR +F P+ Sbjct: 124 EIAAASILAKVFRDREMEVLDRLCPGYALGVHKGYPTRLHIDRLASRGASFFHRRSFAPV 183 Query: 205 R 205 R Sbjct: 184 R 184 >gi|299147105|ref|ZP_07040172.1| ribonuclease HII [Bacteroides sp. 3_1_23] gi|298514990|gb|EFI38872.1| ribonuclease HII [Bacteroides sp. 3_1_23] Length = 200 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 105/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI +A+ A++ AV+ L P+ LIDG + V+KGD LS Sbjct: 73 VSPEEIDEINILRASFLAMHRAVDQLSTRPQHLLIDGNRFTKYPGVPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H+++P Y +D + GYPT KH+ I E+G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRASIAERGTTPYHRMTFNLL 191 >gi|296171466|ref|ZP_06852752.1| ribonuclease HII [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894152|gb|EFG73912.1| ribonuclease HII [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 242 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 78/202 (38%), Positives = 116/202 (57%), Gaps = 10/202 (4%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE+ + + PVAG+DEVGRGA AGP+VVAA +L P + ++DSKK++ RE+L Sbjct: 20 LESALYRSGLGPVAGVDEVGRGACAGPLVVAACVLGPGRLESLAALDDSKKLTEGAREKL 79 Query: 72 YEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + I A ++ I A +D+ +H A ++ + AV L + P L DG +P Sbjct: 80 FPLIRRYALAYHVVFIPPAE---VDRRGVHVANIEGMRRAVAGLSLRPGYVLSDGFRVP- 135 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP + VI GD+++ IAAAS++AKV+RDRLM +P YGF H GY T H Sbjct: 136 GLPVPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMDADHPGYGFAEHKGYSTPAHSTA 195 Query: 188 IKEKGPSCIHRLTFRPLRNLSV 209 + + GP HR +F +R +++ Sbjct: 196 LTQLGPCPEHRRSFINVRRVAL 217 >gi|219684853|ref|ZP_03539795.1| ribonuclease HII [Borrelia garinii PBr] gi|219685363|ref|ZP_03540182.1| ribonuclease HII [Borrelia garinii Far04] gi|219671798|gb|EED28853.1| ribonuclease HII [Borrelia garinii PBr] gi|219673136|gb|EED30156.1| ribonuclease HII [Borrelia garinii Far04] Length = 181 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 107/179 (59%), Gaps = 3/179 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDEVGRG + GPV+ AA++ PN I ++DSKK+ +KRE L I ++ + Sbjct: 2 ICGIDEVGRGCIFGPVLSAAVVFKKKPNFIK-ELDDSKKLKKEKREYLSSLILENSYYAF 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S+ I+K NIH ATL A+ A ENL++ +DG+ +P+ A+IKGDSI Sbjct: 61 AEISNIIIEKINIHNATLLAMQTAYENLKLNCSLVFVDGKFVPKITAKTVKAIIKGDSII 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I AASIIAKV RD+L+ K YP Y + GYPT +H+ IK+ G +HR F+ Sbjct: 121 DEIKAASIIAKVKRDKLIDEYDKIYPLYLLRKNKGYPTKEHKNAIKKYGVLSLHRKNFK 179 >gi|237709459|ref|ZP_04539940.1| ribonuclease HII [Bacteroides sp. 9_1_42FAA] gi|229456515|gb|EEO62236.1| ribonuclease HII [Bacteroides sp. 9_1_42FAA] Length = 201 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 77/181 (42%), Positives = 109/181 (60%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ +R L E + A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPVDFKNELLNDSKQLTEHQRYVLREIVEREALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143 + + ID+ NI A+ A++ AV+ L++ P+ LIDG +DLP V+KGD Sbjct: 73 VTPEEIDEINILNASFLAMHRAVDQLKIRPQHLLIDGNRFKKYQDLPHTT--VVKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAASI+AK RD M HK+YP Y ++S+ GYPT KH+ I+E G + HR+TF Sbjct: 131 LSIAAASILAKTYRDDYMNGLHKEYPFYDWNSNKGYPTKKHRAAIREYGTTPYHRMTFNL 190 Query: 204 L 204 L Sbjct: 191 L 191 >gi|50365354|ref|YP_053779.1| ribonuclease HII, primer excision [Mesoplasma florum L1] gi|50363910|gb|AAT75895.1| Ribonuclease HII, primer excision [Mesoplasma florum L1] Length = 208 Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 82/197 (41%), Positives = 118/197 (59%), Gaps = 5/197 (2%) Query: 14 LEAMVREKNMWP-VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 ++ +REK ++G DE GRGA+AGPVVVA++IL + I DSKK+S K+RE L Sbjct: 9 FDSQIREKYKTDFISGSDEAGRGAMAGPVVVASVILPKDYKNCLIRDSKKLSKKQRESLC 68 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-EDLP 130 E+I S AI +I +D N +A+ + ++ NL+ P LID +I ++ Sbjct: 69 EEIKSVAISYAIEIIEADEVDILNPKQASRIGMTKSIMNLKPKPDLCLIDAENIIIQEYV 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 C F IKGD +S SIAAASI+AK TRD +M K YP+Y F+SH GY +H + K Sbjct: 129 CAPF--IKGDDLSQSIAAASILAKTTRDNIMLDYAKIYPEYNFESHKGYCVKEHVEKTKM 186 Query: 191 KGPSCIHRLTFRPLRNL 207 G IHR T++P++++ Sbjct: 187 LGVLPIHRKTYKPIKDI 203 >gi|271970454|ref|YP_003344650.1| ribonuclease H [Streptosporangium roseum DSM 43021] gi|270513629|gb|ACZ91907.1| Ribonuclease H [Streptosporangium roseum DSM 43021] Length = 222 Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 77/199 (38%), Positives = 109/199 (54%), Gaps = 3/199 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + LE ++ VAG+DEVGRGA AGPV V A++ D + P G+ DSK +S +R Sbjct: 3 PSYALERLLSADGTKLVAGVDEVGRGAWAGPVAVCAVVTDLSEPPAGLTDSKMLSPARRT 62 Query: 70 ELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + +IT +A I ASH+ ID + +A A A+ L V P + ++DG+ Sbjct: 63 SMVAEITGWAAGIGYGEASHEEIDALGMTEALRRAAGRALAGLPVRPDAVILDGKHDYLG 122 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 P IKGD +S+AAAS+IAKV RD M A +YGF + GYP+ HQ + Sbjct: 123 APWPVRCEIKGDLSCVSVAAASVIAKVRRDAYM--ASLGLEEYGFADNAGYPSPVHQAAL 180 Query: 189 KEKGPSCIHRLTFRPLRNL 207 GP+ HRL++ L +L Sbjct: 181 ASLGPTAHHRLSWSYLDDL 199 >gi|88608875|ref|YP_506577.1| ribonuclease HII [Neorickettsia sennetsu str. Miyayama] gi|123491623|sp|Q2GD69|RNH2_NEOSM RecName: Full=Ribonuclease HII; Short=RNase HII gi|88601044|gb|ABD46512.1| ribonuclease HII [Neorickettsia sennetsu str. Miyayama] Length = 195 Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 79/185 (42%), Positives = 109/185 (58%), Gaps = 6/185 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84 +AG+DEVGRG LAGPVV A+IL N IP DSK +S R YE+I S++ +I Sbjct: 11 IAGVDEVGRGCLAGPVVACAVILTENLAIP---GDSKVLSRAVRLSWYEEIISNSYNAIG 67 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC--QAFAVIKGDSI 142 +S + I+ NI ATL A+ A+E L V+P + LIDGR I + + +V+ GD I Sbjct: 68 MSSVKEIETMNILNATLLAMERALERLPVVPTTVLIDGRDIINNAAKYKEVKSVVSGDKI 127 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I AASI+AKVTRDRLM YP Y + + GY T +H + + + G + HR F Sbjct: 128 YGEIKAASIVAKVTRDRLMEGLDLTYPYYRWKFNKGYGTKEHLEALAKYGVTDHHRRKFA 187 Query: 203 PLRNL 207 P++ + Sbjct: 188 PVKRM 192 >gi|255692962|ref|ZP_05416637.1| ribonuclease HII [Bacteroides finegoldii DSM 17565] gi|260621273|gb|EEX44144.1| ribonuclease HII [Bacteroides finegoldii DSM 17565] Length = 200 Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 106/179 (59%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPGDFKNELLNDSKQLTEKQRYALREVIQREAVAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI +A+ A++ AV+ L + P+ LIDG + ++KGD LS Sbjct: 73 VSPEEIDELNILRASFLAMHRAVDQLAIRPQHLLIDGNRFNKYPGIPHTTIVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H+++P Y +D + GYPT KH+ I E+G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTFNLL 191 >gi|227833393|ref|YP_002835100.1| Ribonuclease HII [Corynebacterium aurimucosum ATCC 700975] gi|262184381|ref|ZP_06043802.1| ribonuclease HII [Corynebacterium aurimucosum ATCC 700975] gi|227454409|gb|ACP33162.1| Ribonuclease HII [Corynebacterium aurimucosum ATCC 700975] Length = 213 Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 77/192 (40%), Positives = 108/192 (56%), Gaps = 6/192 (3%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI---NDSKKISHKKREEL 71 E + + + PVAG+DE GRGA GPV +AA IL P+ I G+ +DSKK++ RE+L Sbjct: 11 EVALSKAGLGPVAGVDEAGRGACCGPVTIAACIL-PDRILPGLEWLDDSKKLTPAAREKL 69 Query: 72 YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 I A+ S+ + ID I A L + AV L + P L D +P LP Sbjct: 70 EPVIKRRALAWSVVHIGAKGIDAFGIQHANLSGMRRAVAQLGIRPGYVLSDALFVP-GLP 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD+ + IAAAS++AKV+RDRLM K+YP Y ++H GY TA HQ+ I Sbjct: 129 APQLPIIGGDTAARCIAAASVLAKVSRDRLMADVAKQYPGYALETHKGYGTAVHQEAIAR 188 Query: 191 KGPSCIHRLTFR 202 G + HR+++R Sbjct: 189 LGATPEHRMSYR 200 >gi|89890457|ref|ZP_01201967.1| ribonuclease HII, RNase HII [Flavobacteria bacterium BBFL7] gi|89517372|gb|EAS20029.1| ribonuclease HII, RNase HII [Flavobacteria bacterium BBFL7] Length = 199 Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 105/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRG L GPV AA+IL P+ ++DSKK+S K+R +L I AI +S Sbjct: 13 CGTDEAGRGCLCGPVTAAAVILPPDFKSDLLDDSKKLSRKRRYQLRSLIEEHAISYHVSH 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + ID+ NI A++ A++ A++ L++ P +DG QA VIKGD L Sbjct: 73 VMMETIDEINILNASILAMHQAIDGLKINPEHIAVDGNRFKPYADIQATTVIKGDGKYLH 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M +++P+Y + + GYPT KH++ IK+ G + HR+TF+ L Sbjct: 133 IAAASILAKTYRDDYMEKIAREHPEYDWHKNQGYPTKKHREAIKKYGTTPYHRMTFKLL 191 >gi|282899032|ref|ZP_06307014.1| Ribonuclease HII/HIII [Cylindrospermopsis raciborskii CS-505] gi|281196172|gb|EFA71087.1| Ribonuclease HII/HIII [Cylindrospermopsis raciborskii CS-505] Length = 213 Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 79/184 (42%), Positives = 110/184 (59%), Gaps = 7/184 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELYEKITSSAI 80 +AG+DEVGRGAL GPVV AA+IL PN+ + I DSK++S +R L +++ A+ Sbjct: 18 IAGVDEVGRGALFGPVVAAAVIL-PNSALSILVESKIKDSKQLSVSRRHYLAQQVAQLAV 76 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 I A+ ID+ NI +ATL A+ AV L+ P L+DG DL + +I+G Sbjct: 77 EWKIGYATTAEIDRLNILQATLLAMKRAVLKLKSQPSLCLVDGNQFIRDLLIEQQTIIQG 136 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D SL+IAAASI+AKV RD L+ KKY Y + GY + KH +++ GPS +HR Sbjct: 137 DRRSLNIAAASIMAKVWRDDLVVRLGKKYDMYDLHRNKGYGSRKHLLALQKYGPSPLHRR 196 Query: 200 TFRP 203 +F P Sbjct: 197 SFSP 200 >gi|257055033|ref|YP_003132865.1| RNase HII [Saccharomonospora viridis DSM 43017] gi|256584905|gb|ACU96038.1| RNase HII [Saccharomonospora viridis DSM 43017] Length = 275 Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 78/194 (40%), Positives = 113/194 (58%), Gaps = 6/194 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN---IPFGINDSKKISHKKR 68 + L+A + + + PV G+DE GRGA AGP+VVAA +L P + +P + DSK ++ R Sbjct: 17 WALQAALDRRGLGPVVGVDEAGRGACAGPLVVAACVLRPGDGAKLPE-LADSKSLTPLAR 75 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + +YE+I A+ SI ID +H A ++ + AV L P L+DG +P Sbjct: 76 DRVYERILRRALDYSIVVIPPAEIDVQGVHTANIEGMRRAVAALSQRPGYVLLDGFRVP- 134 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP + V+KGD +AAAS++AKVTRDR+M H +YP YGF+ H GY T +H+ Sbjct: 135 GLPAPSVPVLKGDRAVACVAAASVLAKVTRDRIMVGLHAEYPVYGFEVHKGYTTVEHRTA 194 Query: 188 IKEKGPSCIHRLTF 201 + E GP HR +F Sbjct: 195 LAEHGPCEAHRWSF 208 >gi|226305946|ref|YP_002765906.1| ribonuclease HII [Rhodococcus erythropolis PR4] gi|259494071|sp|C0ZXT2|RNH2_RHOE4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|226185063|dbj|BAH33167.1| putative ribonuclease HII [Rhodococcus erythropolis PR4] Length = 226 Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 76/191 (39%), Positives = 109/191 (57%), Gaps = 4/191 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREEL 71 +E+ + + PVAG+DE GRGA AGP+V+AA +L P ++DSKK++ + REEL Sbjct: 19 MESALARTGLGPVAGVDEAGRGACAGPLVIAACVLAPKPQAALARLDDSKKLTERAREEL 78 Query: 72 YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ S+ S +D+ IH A ++ + AV L + P L DG +P L Sbjct: 79 FPAIKRLALAWSVVSVPAAEVDQIGIHVANIEGMRRAVAGLDLEPGYVLTDGFRVP-GLT 137 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD + IAAAS++AKVTRDR+M + +P YGF H GY T H + E Sbjct: 138 APSLPVIGGDGAAACIAAASVLAKVTRDRVMTEMDETHPGYGFAIHKGYSTPLHMDALDE 197 Query: 191 KGPSCIHRLTF 201 GP HR+T+ Sbjct: 198 LGPCPEHRMTY 208 >gi|15594392|ref|NP_212180.1| ribonuclease HII [Borrelia burgdorferi B31] gi|195941785|ref|ZP_03087167.1| ribonuclease H (rnhB) [Borrelia burgdorferi 80a] gi|216264713|ref|ZP_03436705.1| ribonuclease HII [Borrelia burgdorferi 156a] gi|7227916|sp|O51075|RNH2_BORBU RecName: Full=Ribonuclease HII; Short=RNase HII gi|2687927|gb|AAC66435.1| ribonuclease H (rnhB) [Borrelia burgdorferi B31] gi|215981186|gb|EEC21993.1| ribonuclease HII [Borrelia burgdorferi 156a] gi|312148276|gb|ADQ30935.1| ribonuclease HII [Borrelia burgdorferi JD1] Length = 181 Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 108/179 (60%), Gaps = 3/179 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDEVGRG + GP++ AA++ P+ I ++DSKK+ +KRE L I ++ + Sbjct: 2 ICGIDEVGRGCIFGPILSAAVVFKKKPSFIK-ELDDSKKLKKEKREYLSSLILENSYYAF 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S+ I+K NIH A+L A+ A ENL++ L+DG+ +P+ A+IKGDSI Sbjct: 61 AEISNITIEKINIHNASLLAMQTAYENLKLNCSLVLVDGKFVPKITAKNVKAIIKGDSII 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR F+ Sbjct: 121 DEIKAASIIAKVKRDKLMDKYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFK 179 >gi|163786300|ref|ZP_02180748.1| ribonuclease HII [Flavobacteriales bacterium ALC-1] gi|159878160|gb|EDP72216.1| ribonuclease HII [Flavobacteriales bacterium ALC-1] Length = 200 Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 104/178 (58%), Gaps = 1/178 (0%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSA 86 G DE GRG LAGPV AA+IL + +NDSK++S K R L I + A+ ++ Sbjct: 15 GTDEAGRGCLAGPVTAAAVILPQSFNNKKLNDSKQLSEKNRNLLKPIIETEALSFAVHHI 74 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSI 146 ID NI A++ A++H+++ L++ P ++DG Q +IKGDS LSI Sbjct: 75 FESEIDTINILNASIKAMHHSIDKLKITPNYIIVDGNKFKPYRDIQHKTIIKGDSKYLSI 134 Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 AAASI+AK RD M+ H+++P Y + + GYPT +H+ IKE G + HR +FR L Sbjct: 135 AAASILAKTYRDEYMKKIHEEFPMYNWKQNKGYPTKEHRAAIKEFGITKYHRKSFRLL 192 >gi|121998236|ref|YP_001003023.1| ribonuclease HII [Halorhodospira halophila SL1] gi|189043603|sp|A1WX09|RNH2_HALHL RecName: Full=Ribonuclease HII; Short=RNase HII gi|121589641|gb|ABM62221.1| RNase HII [Halorhodospira halophila SL1] Length = 195 Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 79/194 (40%), Positives = 109/194 (56%), Gaps = 5/194 (2%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 M + W V G+DE GRG AGPVV AA++L G+ DSK++S + RE I Sbjct: 1 MTPSRGAWGVVGVDEAGRGPWAGPVVAAAVVL--AEPIAGVTDSKRLSARSRERAAALIR 58 Query: 77 SSAII-SISSASHQYIDKHNIHKAT-LDAIYHAVENLQVIP-RSALIDGRSIPEDLPCQA 133 S A+ + A ID NI +AT L + P L+DGR IP+DLP A Sbjct: 59 SEAVAWGVGRADVTEIDALNIRRATFLAMARAVAVVAETSPIAEVLVDGREIPDDLPAPA 118 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 V+ GD++ +I+AASI+AK RD M + + YP YGF H GY TA+H++ ++E GP Sbjct: 119 RPVVGGDALEPAISAASILAKTLRDAEMVLLDEAYPGYGFGRHKGYGTAEHRRALEELGP 178 Query: 194 SCIHRLTFRPLRNL 207 +HR +F P+R L Sbjct: 179 CPMHRRSFAPVRRL 192 >gi|313811659|gb|EFS49373.1| ribonuclease HII [Propionibacterium acnes HL083PA1] Length = 204 Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L+ Sbjct: 4 ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 63 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A+ +S D+ + +A + + AV L V P L DG + + L Sbjct: 64 NVIMDKALAVSWVGVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFQV-DGLTV 122 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 123 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 182 Query: 192 GPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 183 GPSRQHRMSYANVRR 197 >gi|300727476|ref|ZP_07060867.1| ribonuclease HII [Prevotella bryantii B14] gi|299775179|gb|EFI71780.1| ribonuclease HII [Prevotella bryantii B14] Length = 203 Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 83/183 (45%), Positives = 112/183 (61%), Gaps = 9/183 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 AG DE GRG LAG V AA+IL D NN +NDSK++S KKR L E+I A+ +I Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPADYNNPE--LNDSKQLSLKKRYALREQIQKDAVAWAI 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDS 141 + + IDK NI A+ A++ A+E LQV P++ +IDG +DLP ++KGDS Sbjct: 71 GVVTPEEIDKINILHASFLAMHRAIEQLQVKPQALIIDGNHFDPYKDLPYTT--IVKGDS 128 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASI+AK RD M+ ++YP Y + S+ GYPT KH+ I+E G S HR ++ Sbjct: 129 KYQSIAAASILAKTYRDDYMKALAEEYPYYDWASNKGYPTKKHRLGIREHGVSPYHRKSY 188 Query: 202 RPL 204 L Sbjct: 189 NLL 191 >gi|223889172|ref|ZP_03623761.1| ribonuclease HII [Borrelia burgdorferi 64b] gi|223885421|gb|EEF56522.1| ribonuclease HII [Borrelia burgdorferi 64b] Length = 181 Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 108/179 (60%), Gaps = 3/179 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDEVGRG + GP++ AA++ P+ I ++DSKK+ +KRE L I ++ + Sbjct: 2 ICGIDEVGRGCIFGPILSAAVVFKKKPSFIK-ELDDSKKLKKEKREYLSSLILENSYYAF 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S+ I+K NIH A+L A+ A ENL++ L+DG+ +P+ A+IKGDSI Sbjct: 61 AEISNITIEKINIHNASLLAMQTAYENLKLNCSLVLVDGKFVPKITAKNVKAIIKGDSII 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR F+ Sbjct: 121 DEIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFK 179 >gi|188996137|ref|YP_001930388.1| Ribonuclease H [Sulfurihydrogenibium sp. YO3AOP1] gi|229564299|sp|B2V752|RNH2_SULSY RecName: Full=Ribonuclease HII; Short=RNase HII gi|188931204|gb|ACD65834.1| Ribonuclease H [Sulfurihydrogenibium sp. YO3AOP1] Length = 197 Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 78/177 (44%), Positives = 109/177 (61%), Gaps = 3/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDE GRG LAGP+V+A++I + PF DSK +S K+RE L+EKI A I+I+ Sbjct: 16 IVGIDEAGRGPLAGPLVIASVIFPKHQKPFIHTDSKGLSEKEREYLFEKIHDYAEEINIT 75 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + IDK I A + + +++L+ AL+D + E + +IKGD IS Sbjct: 76 IVENTEIDKFGISNAAKIYMENNLKSLKSKWDIALVDFVKLDESI--NHLPLIKGDEISH 133 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +IAAASIIAKV RDR+M +KYP++ FD H GY T +H Q IK+ G + IHR +F Sbjct: 134 TIAAASIIAKVVRDRIMIEYKEKYPNFSFDKHKGYATKQHYQEIKKFGITPIHRRSF 190 >gi|296394368|ref|YP_003659252.1| ribonuclease H [Segniliparus rotundus DSM 44985] gi|296181515|gb|ADG98421.1| Ribonuclease H [Segniliparus rotundus DSM 44985] Length = 221 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 73/195 (37%), Positives = 110/195 (56%), Gaps = 6/195 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN---IPFGINDSKKISHKKREE 70 EA +R VAG+DE GRGA AGP+VVA+ +L P + +P G++DSK+++ +KRE Sbjct: 24 FEAALRRAGYTSVAGVDEAGRGACAGPLVVASCVLKPRSARALP-GLDDSKRLTAQKREW 82 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L +I ++ + +D +H+A L+ + AV L P L+DG +P + Sbjct: 83 LEPRIREQSLGWHVVVMPPAEVDAMGVHQANLEGMRRAVAGLAQPPDYVLMDGFDVP-GM 141 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P A V+ GD + IAAAS++AKV RDR+M + YGF +H GY TA H + Sbjct: 142 PSPAQRVVGGDRLVACIAAASVLAKVARDRIMVALDQSRSGYGFAAHKGYCTAAHMSALA 201 Query: 190 EKGPSCIHRLTFRPL 204 + GP HR ++ P+ Sbjct: 202 QFGPCEHHRYSYAPV 216 >gi|167630260|ref|YP_001680759.1| ribonuclease hii [Heliobacterium modesticaldum Ice1] gi|167593000|gb|ABZ84748.1| ribonuclease hii [Heliobacterium modesticaldum Ice1] Length = 205 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 80/195 (41%), Positives = 112/195 (57%), Gaps = 1/195 (0%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E+++R K +AG+DE GRG+LAGPVV AA+IL + G+NDSKK+S +RE L Sbjct: 7 ERESLLRRKGFHVIAGVDEAGRGSLAGPVVAAAVILPLGCMMEGLNDSKKLSPARREALA 66 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ I S Q ID+ I +T A+ A++ L P ++DG Sbjct: 67 VEIKRLALAWGIGIVSSQVIDRIGIVPSTFRAMSLAIDRLGDRPDYLIVDGNQKVPGYEG 126 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A+I GD+++ +AAASI+AKV RD LM+ +P YGF+ H GY T H+ I E+ Sbjct: 127 TQEALIDGDALAAPVAAASILAKVVRDGLMKRYSLFFPGYGFEQHKGYGTQAHRSAILEQ 186 Query: 192 GPSCIHRLTFRPLRN 206 G +HR TF LR Sbjct: 187 GTCLLHRETFVHLRR 201 >gi|238022898|ref|ZP_04603324.1| hypothetical protein GCWU000324_02819 [Kingella oralis ATCC 51147] gi|237865706|gb|EEP66844.1| hypothetical protein GCWU000324_02819 [Kingella oralis ATCC 51147] Length = 200 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 73/182 (40%), Positives = 105/182 (57%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85 AG+DE GRG L G V AA++L + G+ DSKK+S KR+ L +I A + +++S Sbjct: 11 AGVDEAGRGCLVGSVFAAAVMLPVHYDLPGLTDSKKLSEAKRDALAAQIKRQATVWAVAS 70 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A+ I + NI AT+ A+ AV L P IDG +P DL A AV+KGD+ + Sbjct: 71 ANPAEIQRLNILHATMLAMCRAVAALPRQPEKVWIDGNRVPPDLAVPAEAVVKGDAKIAA 130 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 ++AASI+AK RD M H+++P+YGF H GY TA H ++ G HR F P++ Sbjct: 131 VSAASILAKTARDAEMYALHERHPEYGFAQHKGYGTAAHLAALQRYGALPEHRADFAPVK 190 Query: 206 NL 207 + Sbjct: 191 QI 192 >gi|225552167|ref|ZP_03773107.1| ribonuclease HII [Borrelia sp. SV1] gi|225371165|gb|EEH00595.1| ribonuclease HII [Borrelia sp. SV1] Length = 181 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 73/178 (41%), Positives = 105/178 (58%), Gaps = 1/178 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84 + GIDEVGRG + GP++ AA++ ++DSKK+ +KRE L I ++ + + Sbjct: 2 ICGIDEVGRGCIFGPILSAAVVFKKKTSFINELDDSKKLKKEKREYLSSLILENSYYAFA 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S+ I+K NIH A+L A+ A ENL++ L+DG+ +P+ A+IKGDSI Sbjct: 62 EISNITIEKINIHNASLLAMQTAYENLKLNCSLVLVDGKFVPKITAKNVKAIIKGDSIID 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR F+ Sbjct: 122 EIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFK 179 >gi|218249357|ref|YP_002374579.1| ribonuclease HII [Borrelia burgdorferi ZS7] gi|221217459|ref|ZP_03588930.1| ribonuclease HII [Borrelia burgdorferi 72a] gi|224533017|ref|ZP_03673623.1| ribonuclease HII [Borrelia burgdorferi WI91-23] gi|225549702|ref|ZP_03770667.1| ribonuclease HII [Borrelia burgdorferi 118a] gi|226320780|ref|ZP_03796336.1| ribonuclease HII [Borrelia burgdorferi 29805] gi|226322040|ref|ZP_03797565.1| ribonuclease HII [Borrelia burgdorferi Bol26] gi|226736816|sp|B7J0Y4|RNH2_BORBZ RecName: Full=Ribonuclease HII; Short=RNase HII gi|218164545|gb|ACK74606.1| ribonuclease HII [Borrelia burgdorferi ZS7] gi|221192737|gb|EEE18953.1| ribonuclease HII [Borrelia burgdorferi 72a] gi|224512011|gb|EEF82406.1| ribonuclease HII [Borrelia burgdorferi WI91-23] gi|225369662|gb|EEG99110.1| ribonuclease HII [Borrelia burgdorferi 118a] gi|226232630|gb|EEH31384.1| ribonuclease HII [Borrelia burgdorferi Bol26] gi|226233835|gb|EEH32560.1| ribonuclease HII [Borrelia burgdorferi 29805] gi|312149652|gb|ADQ29723.1| ribonuclease HII [Borrelia burgdorferi N40] Length = 181 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 108/179 (60%), Gaps = 3/179 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDEVGRG + GP++ AA++ P+ I ++DSKK+ +KRE L I ++ + Sbjct: 2 ICGIDEVGRGCIFGPILSAAVVFKKKPSFIK-ELDDSKKLKKEKREYLSSLILKNSYYAF 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S+ I+K NIH A+L A+ A ENL++ L+DG+ +P+ A+IKGDSI Sbjct: 61 AEISNITIEKINIHNASLLAMQTAYENLKLNCSLVLVDGKFVPKITAKNVKAIIKGDSII 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR F+ Sbjct: 121 DEIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFK 179 >gi|239908101|ref|YP_002954842.1| ribonuclease HII [Desulfovibrio magneticus RS-1] gi|239797967|dbj|BAH76956.1| ribonuclease HII [Desulfovibrio magneticus RS-1] Length = 210 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 77/186 (41%), Positives = 109/186 (58%), Gaps = 10/186 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83 VAG+DE GRG LAGPV A+IL + +P G+ DSKK++ KRE L I + A+ ++ Sbjct: 10 VAGVDEAGRGCLAGPVAAGAVILPEIYELP-GLTDSKKLTPAKREALAPAIKAQALAWAV 68 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA-------V 136 + ID+ NI +AT A+ A+ +L++ P A IDG I + A V Sbjct: 69 AFVWPGEIDRINILQATFAAMAKALAHLRLFPGLACIDGNKIIPEAYLGLLAGRLRQECV 128 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 I GD+ +I+AASI+AK RDRL+ + +++P YGF +H GY A H ++ GP I Sbjct: 129 IGGDASVPAISAASILAKTARDRLLDLYDRRHPGYGFAAHKGYGVAVHLDALRRLGPCSI 188 Query: 197 HRLTFR 202 HRLTFR Sbjct: 189 HRLTFR 194 >gi|85707870|ref|ZP_01038936.1| ribonuclease HII [Erythrobacter sp. NAP1] gi|85689404|gb|EAQ29407.1| ribonuclease HII [Erythrobacter sp. NAP1] Length = 206 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 77/190 (40%), Positives = 114/190 (60%), Gaps = 9/190 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87 G+DE GRG LAGPVV AA++L +P GI DSKK+S K+R L E++ + +++ Sbjct: 17 GVDEAGRGPLAGPVVAAAVVLG-EGLPAGIGDSKKLSAKRRAALDEELRACCKWAVAVVE 75 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQV-IPRS---ALIDGRSIPE----DLPCQAFAVIKG 139 ID+ NI +AT++A+ V +L +P S LIDG PE + A A++ G Sbjct: 76 ADEIDRLNIFQATMEAMTRCVRDLAAQLPGSPDIVLIDGNQTPERRCAEWRWPARAIVGG 135 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D I SI AASIIAK RDR+M A + +P YG++ + GY T +H + ++ GP+ +HR Sbjct: 136 DGIEPSIGAASIIAKEWRDRMMIAAARAHPAYGWERNKGYGTKEHMEALRLHGPTSLHRQ 195 Query: 200 TFRPLRNLSV 209 +F P+ S+ Sbjct: 196 SFAPVAQASL 205 >gi|68536259|ref|YP_250964.1| ribonuclease HII [Corynebacterium jeikeium K411] gi|260578959|ref|ZP_05846862.1| ribonuclease HII [Corynebacterium jeikeium ATCC 43734] gi|97182389|sp|Q4JV11|RNH2_CORJK RecName: Full=Ribonuclease HII; Short=RNase HII gi|68263858|emb|CAI37346.1| rnhB [Corynebacterium jeikeium K411] gi|258602933|gb|EEW16207.1| ribonuclease HII [Corynebacterium jeikeium ATCC 43734] Length = 208 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 73/193 (37%), Positives = 108/193 (55%), Gaps = 5/193 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN---DSKKISHKKREE 70 +E + + PVAG+DE GRGA GP+ +AA IL + G++ DSKK++ K RE Sbjct: 1 MERELESAGLGPVAGVDEAGRGACCGPISIAACILPSDLDGVGLDRLTDSKKLTEKTRER 60 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY+ I A+ SI S + ID+ I A + + AV L V P L D +P L Sbjct: 61 LYDVIRDVAVSYSIIHISAEDIDRFGIQHANVSGMRRAVAALDVQPGYVLTDAVKVP-GL 119 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P V+KGD ++ I+AAS++AKV+RDR++R +++P YG SH GY T H + Sbjct: 120 PMPHLPVVKGDQMAKCISAASVLAKVSRDRVLRTLDEEFPGYGLASHKGYGTKAHMTAVS 179 Query: 190 EKGPSCIHRLTFR 202 G + HR +++ Sbjct: 180 LHGGTPYHRYSYK 192 >gi|149371924|ref|ZP_01891243.1| ribonuclease HII [unidentified eubacterium SCB49] gi|149355064|gb|EDM43625.1| ribonuclease HII [unidentified eubacterium SCB49] Length = 199 Score = 127 bits (320), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 101/179 (56%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRG L+GPV AA+IL N + DSK++SHKKR EL I +AI + Sbjct: 13 CGTDEAGRGCLSGPVTAAAVILPDNFSHPWLTDSKQLSHKKRMELKPIIEEAAISYGVCH 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 IDK NI A++ A++ +++ L P+ IDG VIKGD L Sbjct: 73 VMMDEIDKINILNASILAMHRSIDKLTTAPQFIAIDGNRFKPYAEIPYECVIKGDGKFLH 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M+ H+K+P Y + + GYPT +H+ I+E GPS HR +FR L Sbjct: 133 IAAASILAKTHRDLYMQELHEKFPMYNWQKNKGYPTKEHRAAIREHGPSPYHRKSFRLL 191 >gi|284008506|emb|CBA75018.1| ribonuclease HII [Arsenophonus nasoniae] Length = 174 Score = 127 bits (320), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 74/168 (44%), Positives = 100/168 (59%), Gaps = 2/168 (1%) Query: 41 VVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKA 99 +V AA+ILDP G+ DSKK++ K+R L +I A+ SI A + IDK NI +A Sbjct: 1 MVTAAVILDPKQPIIGLADSKKLTEKRRNALCIEILDKALCWSIGRAEPEEIDKINILQA 60 Query: 100 TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR 159 T A+ AV L P L+DG P P + A+IKGDS+ I+AASI+AKVTRDR Sbjct: 61 TFLAMRRAVAGLTTRPDIVLVDGNKSP-GFPVPSQAIIKGDSLVQEISAASILAKVTRDR 119 Query: 160 LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 MR +P+YGF H GYPTA H + + + G + HR +F P+R + Sbjct: 120 EMRELDILFPEYGFAQHKGYPTAFHLEKLAQHGATQFHRKSFAPVRRV 167 >gi|255524250|ref|ZP_05391209.1| Ribonuclease H [Clostridium carboxidivorans P7] gi|296185372|ref|ZP_06853782.1| ribonuclease HII [Clostridium carboxidivorans P7] gi|255512075|gb|EET88356.1| Ribonuclease H [Clostridium carboxidivorans P7] gi|296050206|gb|EFG89630.1| ribonuclease HII [Clostridium carboxidivorans P7] Length = 293 Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 79/192 (41%), Positives = 114/192 (59%), Gaps = 9/192 (4%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIIL-----DPNNIPFGINDSKKISHKKREELYEKIT 76 N +AG+DEVGRG LAGP+ +++L D ++ GI DSKK+SH RE L + I Sbjct: 98 NYVYIAGVDEVGRGPLAGPIAAGSVVLNLRSHDFKDLLLGIKDSKKLSHDTRERLSKLIK 157 Query: 77 SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 + +I +IS ++ ID+ I + + A L++ P L DG ++ ++L + Sbjct: 158 AKSISYNISVINNAEIDERGIAWCNNEVLRRAASGLKITPDLVLSDGYAV-KNLNIENEF 216 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 VIKGD+ S SIA ASIIAKV RD LM+ K YP YGF+ + GY T +H + IK+ G Sbjct: 217 VIKGDAKSASIACASIIAKVYRDNLMQEYAKIYPQYGFERNSGYGTEEHIEAIKKYGICK 276 Query: 196 IHRLTFRPLRNL 207 IHR +F L+N+ Sbjct: 277 IHRKSF--LKNI 286 >gi|55980167|ref|YP_143464.1| ribonuclease HII [Thermus thermophilus HB8] gi|73917835|sp|Q5SLU5|RNH2_THET8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|55771580|dbj|BAD70021.1| ribonuclease HII [Thermus thermophilus HB8] Length = 203 Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 79/192 (41%), Positives = 109/192 (56%), Gaps = 6/192 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 LEA K + VAG+DE GRGA AGP+VV A++L P PF DSK +S K RE L E Sbjct: 6 LEAPFWRKGLL-VAGLDEAGRGAWAGPIVVGAVVLPPGEYPF--RDSKLLSPKARERLAE 62 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 K+ A+ ++ A +D+ + KATL A A+ +L + P + + D +P Sbjct: 63 KVKEVALAFALGVAEAAEVDRLGVLKATLLAAERALLSLPLAPEALVTDYLPLPTP--LP 120 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 + K D S ++AAASI+AKV RDR+M + YP YGF H GY T +HQ+ + G Sbjct: 121 LLSPPKADEKSPTVAAASILAKVHRDRIMDELDRLYPGYGFARHKGYGTQEHQEALLALG 180 Query: 193 PSCIHRLTFRPL 204 PS +HR F P+ Sbjct: 181 PSPVHRKRFAPV 192 >gi|325954163|ref|YP_004237823.1| ribonuclease H [Weeksella virosa DSM 16922] gi|323436781|gb|ADX67245.1| Ribonuclease H [Weeksella virosa DSM 16922] Length = 199 Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 74/190 (38%), Positives = 113/190 (59%), Gaps = 6/190 (3%) Query: 17 MVRE-KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 M+R+ NM G DE GRG LAGPV+ AA++ I DSK ++ KR L E I Sbjct: 1 MLRKLTNMDYECGCDEAGRGCLAGPVIAAAVVFPNEFFDSTIIDSKLLTKIKRNNLRELI 60 Query: 76 TSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQ 132 ++ + + I +Q ID+ NI A+ +A++ A+ L + P ++DG +++P + Sbjct: 61 NTNVLTAEIGFVDNQEIDELNILNASFEAMHRAINKLSIEPDFIIVDGNRFKPYKNIPHE 120 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++KGD+ +SIAAASI+AK RD M+ HK+YP Y +D + GYPT +H++ I+E G Sbjct: 121 C--IVKGDAKYISIAAASILAKTYRDEYMQKIHKEYPMYHWDKNKGYPTKQHREAIREFG 178 Query: 193 PSCIHRLTFR 202 S HR +FR Sbjct: 179 VSPYHRTSFR 188 >gi|281491813|ref|YP_003353793.1| ribonuclease HII [Lactococcus lactis subsp. lactis KF147] gi|281375527|gb|ADA65037.1| Ribonuclease HII [Lactococcus lactis subsp. lactis KF147] Length = 258 Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 85/198 (42%), Positives = 120/198 (60%), Gaps = 5/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREE 70 E E + + + +AGIDEVGRG LAGPVV AA+IL PNN G+NDSKK+ K Sbjct: 59 LEFEKELYGQGIQLIAGIDEVGRGPLAGPVVTAAVIL-PNNCKIRGLNDSKKVPKSKHHA 117 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 + +I A+ I I + ID+ NI++AT A+ AV L V P LID + DL Sbjct: 118 ILSEIQEKALAIGIGIVDAEKIDEVNIYEATKIAMIQAVSKLSVKPEHLLIDAMVL--DL 175 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +I GD+ S SIAAASI+AKVTRD +M+ ++P+Y F+ + GY TAKH + + Sbjct: 176 PIAQTKIIHGDARSASIAAASIVAKVTRDEMMKEFALEFPEYDFEHNAGYGTAKHLEALT 235 Query: 190 EKGPSCIHRLTFRPLRNL 207 + G + IHR ++ P++ + Sbjct: 236 KYGITRIHRKSYEPIKTM 253 >gi|327441071|dbj|BAK17436.1| ribonuclease HII [Solibacillus silvestris StLB046] Length = 257 Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 80/185 (43%), Positives = 119/185 (64%), Gaps = 6/185 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAII-S 82 +AG DE GRG LAGPVV AA+IL PN+ G+NDSK++S +KR + E+I A+ + Sbjct: 71 IAGTDEAGRGPLAGPVVTAAVIL-PNHCQELLGVNDSKQLSKEKRNQFAERIKKHALYYA 129 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + S + ID+ NI++AT ++ ++E L+V P L D ++ +P QA ++IKGD+ Sbjct: 130 VHFQSAEEIDRLNIYEATRQSMLKSIEALEVTPNYILADAMTLSTSIP-QA-SIIKGDAR 187 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SL+IAAASI+AK RD M ++P YGF H GY T +H + I + GP+ HR TF Sbjct: 188 SLAIAAASILAKTARDDYMEKLDLEFPQYGFAQHAGYGTKQHLEAIAQYGPTIHHRKTFE 247 Query: 203 PLRNL 207 P++++ Sbjct: 248 PIKSI 252 >gi|307718734|ref|YP_003874266.1| ribonuclease HII [Spirochaeta thermophila DSM 6192] gi|306532459|gb|ADN01993.1| ribonuclease HII [Spirochaeta thermophila DSM 6192] Length = 193 Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 81/183 (44%), Positives = 106/183 (57%), Gaps = 8/183 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 V GIDEVGRG LAGPVV AA++L P G+ DSKK+S ++RE L+ I +A Sbjct: 4 VCGIDEVGRGPLAGPVVAAAVVLTPGTSLPGLKDSKKLSPEERERLFPLILEAAAAVGVG 63 Query: 86 ASHQY-IDKHNIHKATLDAIYHAVENL------QVIPRSALIDGRSIPEDLPCQAFAVIK 138 + + +D+ NIH ATL A+ A E L ++P +IDGR P + A AV+K Sbjct: 64 WAWPHEVDRFNIHNATLKAMERAYEMLIQKLSPSLVPTEVVIDGRHAPPSI-THARAVVK 122 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 DS + AASI+AKV RD M+I H+ P+Y F H GYPT H++ I G IHR Sbjct: 123 ADSFVPEVMAASIVAKVFRDEWMKIYHRFLPEYTFSQHKGYPTRLHRERILTIGSCPIHR 182 Query: 199 LTF 201 TF Sbjct: 183 RTF 185 >gi|332881721|ref|ZP_08449369.1| ribonuclease HII [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680360|gb|EGJ53309.1| ribonuclease HII [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 207 Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 75/181 (41%), Positives = 108/181 (59%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG LAG V AA+IL + +NDSK++S KKR L E+I A+ ++ Sbjct: 13 AGLDEAGRGCLAGAVYAAAVILQKDYRNEMLNDSKQLSEKKRYLLREQIERDALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143 + Q ID+ NI A+ A++ A++ L V P + L+DG DLP V+KGD Sbjct: 73 VTPQEIDEINILNASFLAMHRALDQLAVRPEALLVDGNRFKPYRDLPHTT--VVKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +SIAAASI+AK RD M H++YP Y +DS+ GYP H++ I+ G + HR+++ Sbjct: 131 MSIAAASILAKTYRDDYMLRLHEEYPVYHWDSNKGYPAKAHREAIRRHGVTPYHRMSYNL 190 Query: 204 L 204 L Sbjct: 191 L 191 >gi|224533903|ref|ZP_03674488.1| ribonuclease HII [Borrelia burgdorferi CA-11.2a] gi|225549198|ref|ZP_03770171.1| ribonuclease HII [Borrelia burgdorferi 94a] gi|224512906|gb|EEF83272.1| ribonuclease HII [Borrelia burgdorferi CA-11.2a] gi|225370056|gb|EEG99496.1| ribonuclease HII [Borrelia burgdorferi 94a] Length = 181 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 107/179 (59%), Gaps = 3/179 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREELYEKITSSAIISI 83 + GIDEVGRG + GP++ AA++ + F ++DSKK+ +KRE L I ++ + Sbjct: 2 ICGIDEVGRGCIFGPILSAAVVF-KKKLGFIKELDDSKKLKKEKREYLSSLILENSYYAF 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S+ I+K NIH A+L A+ A ENL++ L+DG+ +P+ A+IKGDSI Sbjct: 61 AEISNITIEKINIHNASLLAMQTAYENLKLNCSLVLVDGKFVPKITAKNVKAIIKGDSII 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR F+ Sbjct: 121 DEIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFK 179 >gi|116872706|ref|YP_849487.1| ribonuclease HII [Listeria welshimeri serovar 6b str. SLCC5334] gi|123458431|sp|A0AI76|RNH2_LISW6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|116741584|emb|CAK20708.1| ribonuclease HII [Listeria welshimeri serovar 6b str. SLCC5334] Length = 261 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 84/195 (43%), Positives = 119/195 (61%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + + +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ L+ Sbjct: 60 QYETNLSTQGFQYIAGVDEVGRGPLAGPVVAAAVILPADFSLLGINDSKQLSEAKRDMLF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I A+ I + H ID+ NI++AT A+ A++ L P L+D ++P Sbjct: 120 EIIKKEALSIGVGIIEHDMIDQVNIYEATKLAMSEALDQLNPAPDFILVD--AMPLKYSE 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDR+M+ YP Y F +++GY T KH + Sbjct: 178 SELSLIKGDTKSISIAAASIIAKVTRDRMMQHYDALYPGYDFANNMGYGTKKHLNGLDTI 237 Query: 192 GPSCIHRLTFRPLRN 206 G IHRL+F P++ Sbjct: 238 GVCPIHRLSFSPVKE 252 >gi|291294813|ref|YP_003506211.1| ribonuclease H [Meiothermus ruber DSM 1279] gi|290469772|gb|ADD27191.1| Ribonuclease H [Meiothermus ruber DSM 1279] Length = 215 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/205 (39%), Positives = 108/205 (52%), Gaps = 20/205 (9%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYE 73 E + W VAG+DE GRGALAGPVV AA+IL P P + DSK ++ + RE L E Sbjct: 5 ESDWWKLGLRVAGVDEAGRGALAGPVVAAAVILPPPKEPALYPFRDSKTLTPRAREHLAE 64 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE----- 127 ++ + A+ + A ID+ I +AT A A+E L+V P + L D + + Sbjct: 65 QVRAVALAWGVGWAEVAEIDRLGILRATHLAAARALEQLKVSPEALLTDYLRLEQEWQQY 124 Query: 128 --------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 D P A K D S ++AAASI+AKV RDR M ++YP YGF H GY Sbjct: 125 LRNNPSRPDAPHLLRAPPKADRHSPTVAAASILAKVARDRYMEALEQRYPGYGFAQHKGY 184 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPL 204 T H + +K GP HR TF P+ Sbjct: 185 GTTLHLRALKALGPCGAHRRTFAPV 209 >gi|313831400|gb|EFS69114.1| ribonuclease HII [Propionibacterium acnes HL007PA1] gi|313835012|gb|EFS72726.1| ribonuclease HII [Propionibacterium acnes HL056PA1] gi|314974275|gb|EFT18371.1| ribonuclease HII [Propionibacterium acnes HL053PA1] gi|314976720|gb|EFT20815.1| ribonuclease HII [Propionibacterium acnes HL045PA1] gi|314984422|gb|EFT28514.1| ribonuclease HII [Propionibacterium acnes HL005PA1] gi|315081336|gb|EFT53312.1| ribonuclease HII [Propionibacterium acnes HL078PA1] gi|315095246|gb|EFT67222.1| ribonuclease HII [Propionibacterium acnes HL038PA1] gi|327328324|gb|EGE70086.1| ribonuclease HII [Propionibacterium acnes HL096PA2] gi|327444349|gb|EGE91003.1| ribonuclease HII [Propionibacterium acnes HL043PA2] gi|327445013|gb|EGE91667.1| ribonuclease HII [Propionibacterium acnes HL043PA1] gi|328760136|gb|EGF73714.1| ribonuclease HII [Propionibacterium acnes HL099PA1] Length = 204 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L+ Sbjct: 4 ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 63 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A+ +S D+ + +A + + AV L V P L DG + + L Sbjct: 64 NVIMDKALAVSWVGVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 122 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 123 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 182 Query: 192 GPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 183 GPSRQHRMSYANVRR 197 >gi|260591769|ref|ZP_05857227.1| ribonuclease HII [Prevotella veroralis F0319] gi|260536053|gb|EEX18670.1| ribonuclease HII [Prevotella veroralis F0319] Length = 200 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/181 (43%), Positives = 111/181 (61%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL N +NDSKK+S KKR L + I AI ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPTNYKNDLLNDSKKLSAKKRYALRKIIEHDAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIP-EDLPCQAFAVIKGDSIS 143 + + IDK NI A+ A++ A++ L++ P + ++DG R P +DLP ++KGD Sbjct: 73 VTPEEIDKINILNASFLAMHRALDQLKMRPEAIIVDGNRFTPYQDLPFTT--IVKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAASI+AK RD M +KYP Y + S++GYPT KH++ I++ G + HR ++ Sbjct: 131 LSIAAASILAKTYRDDYMLSLAEKYPQYDWQSNMGYPTKKHREAIRQYGITPFHRKSYNL 190 Query: 204 L 204 L Sbjct: 191 L 191 >gi|295130970|ref|YP_003581633.1| ribonuclease HII [Propionibacterium acnes SK137] gi|291377067|gb|ADE00922.1| ribonuclease HII [Propionibacterium acnes SK137] Length = 217 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L+ Sbjct: 17 ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 76 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A+ +S D+ + +A + + AV L V P L DG + + L Sbjct: 77 NVIMDKALAVSWVGVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 135 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 136 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 195 Query: 192 GPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 196 GPSRQHRMSYANVRR 210 >gi|16800380|ref|NP_470648.1| ribonuclease HII [Listeria innocua Clip11262] gi|38258629|sp|Q92C79|RNH2_LISIN RecName: Full=Ribonuclease HII; Short=RNase HII gi|16413785|emb|CAC96543.1| rnhB [Listeria innocua Clip11262] Length = 261 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/182 (46%), Positives = 116/182 (63%), Gaps = 3/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG LAGPVV AA+IL + GINDSK+++ KR+ L++ I AI I I Sbjct: 73 IAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLNEAKRDILFDVIKEEAISIGIG 132 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 H ID+ NI++AT A+ A+E L P LID ++P ++IKGD+ S+ Sbjct: 133 IIDHDVIDQVNIYEATKIAMRTALEELNPAPDFVLID--AMPLKYSESELSLIKGDTKSI 190 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASIIAKVTRDR+M+ + YP Y F +++GY T KH + G IHRL+F P+ Sbjct: 191 SIAAASIIAKVTRDRMMQQYDELYPGYDFANNMGYGTKKHLNGLDTIGICPIHRLSFSPV 250 Query: 205 RN 206 + Sbjct: 251 KE 252 >gi|163754098|ref|ZP_02161221.1| ribonuclease HII [Kordia algicida OT-1] gi|161326312|gb|EDP97638.1| ribonuclease HII [Kordia algicida OT-1] Length = 198 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/183 (40%), Positives = 108/183 (59%), Gaps = 9/183 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 AG DE GRG LAGPV AA+IL + +NDSK++S KKRE L I A+ Sbjct: 12 AGTDEAGRGCLAGPVTAAAVILPKDFSNEILNDSKQLSEKKREILRPVIELEALTF--GV 69 Query: 87 SHQY---IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDS 141 +H Y IDK NI A++ ++ A+ L +P ++DG +D+P Q +IKGD Sbjct: 70 AHIYPVEIDKINILNASILGMHQAIAKLSTVPEHIIVDGNKFKPYKDIPYQT--IIKGDG 127 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 L+IAAAS++AK RD M H+++P Y + + GYPT +H++ IK+ G + HR++F Sbjct: 128 KYLNIAAASVLAKTYRDAYMEKIHEEFPMYNWKKNKGYPTVEHREAIKKYGTTKYHRMSF 187 Query: 202 RPL 204 R L Sbjct: 188 RLL 190 >gi|229491398|ref|ZP_04385222.1| ribonuclease HII [Rhodococcus erythropolis SK121] gi|229321683|gb|EEN87480.1| ribonuclease HII [Rhodococcus erythropolis SK121] Length = 226 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/191 (39%), Positives = 109/191 (57%), Gaps = 4/191 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREEL 71 +E+ + + PVAG+DE GRGA AGP+V+AA +L P ++DSKK++ + REEL Sbjct: 19 MESALARTGLGPVAGVDEAGRGACAGPLVIAACVLAPKPQAALARLDDSKKLTERAREEL 78 Query: 72 YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ S+ S +D+ IH A ++ + AV +L + P L DG +P L Sbjct: 79 FPAIKRLALAWSVISVPAAEVDQIGIHVANIEGMRRAVASLDLEPGYVLTDGFRVP-GLT 137 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD + IAAAS++AKVTRDR+M +P YGF H GY T H + E Sbjct: 138 APSLPVIGGDGAAACIAAASVLAKVTRDRVMTEMDDTHPGYGFAIHKGYSTPLHMDALDE 197 Query: 191 KGPSCIHRLTF 201 GP HR+T+ Sbjct: 198 LGPCPEHRMTY 208 >gi|295396862|ref|ZP_06806990.1| ribonuclease HII [Aerococcus viridans ATCC 11563] gi|294974888|gb|EFG50587.1| ribonuclease HII [Aerococcus viridans ATCC 11563] Length = 269 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/193 (43%), Positives = 113/193 (58%), Gaps = 1/193 (0%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +R++ +AG+DEVGRG LAGPVV +A+IL + P NDSK++SH KR+ L Sbjct: 75 ENELRQQGYQLIAGVDEVGRGPLAGPVVTSAVILPSDMPPVYFNDSKQLSHTKRQALVAD 134 Query: 75 ITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI +I + + ID+ NI AT A+ A+ L P LID + + Sbjct: 135 IEKYAIAKTIGIQTAEDIDQSNILIATKQAMMSALNQLHPAPDYVLIDAVHLNDYKKAPQ 194 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 A+IKGD+ +IAAASI AK RD LM YP YGF+++ GY T +H +K+ GP Sbjct: 195 EAIIKGDATVYAIAAASIYAKEYRDNLMAEYADLYPGYGFEANAGYGTKQHLDGLKKYGP 254 Query: 194 SCIHRLTFRPLRN 206 S IHR TF P++N Sbjct: 255 SPIHRKTFAPVKN 267 >gi|162447204|ref|YP_001620336.1| ribonuclease HII [Acholeplasma laidlawii PG-8A] gi|189043526|sp|A9NF30|RNH2_ACHLI RecName: Full=Ribonuclease HII; Short=RNase HII gi|161985311|gb|ABX80960.1| ribonuclease HII [Acholeplasma laidlawii PG-8A] Length = 202 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/195 (45%), Positives = 117/195 (60%), Gaps = 4/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + +K + G+DE GRG LAGPVV AA+I + INDSK +S KKRE L+E Sbjct: 8 FEKALYDKGYTYICGVDEAGRGPLAGPVVAAAVIFEKGFYHEDINDSKTLSAKKRETLFE 67 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I A+ I +S +H+ IDK NI +A A+ A+ L++ P+ AL D I + +P Sbjct: 68 LIKQHALAIGVSVVNHEVIDKINILEAARHAMEDAISKLKIKPQYALTDHMDI-KGIPYT 126 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 + + GD +S+SIAAASIIAKVTRD+LM + YP YGF H GY T KH + + G Sbjct: 127 S--IKHGDQLSISIAAASIIAKVTRDKLMVDYDEVYPQYGFKDHKGYGTRKHLEALNLYG 184 Query: 193 PSCIHRLTFRPLRNL 207 S IHR TF P+ L Sbjct: 185 VSPIHRKTFAPVAKL 199 >gi|289434557|ref|YP_003464429.1| Ribonuclease HII [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170801|emb|CBH27343.1| rnhB [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 261 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/181 (46%), Positives = 114/181 (62%), Gaps = 3/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KRE L+E I AI + + Sbjct: 73 IAGVDEVGRGPLAGPVVAAAVILPEDFSVVGINDSKQLSELKRETLFELIQQQAIAVGVG 132 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 H ID+ NI++AT A+ A++ L P LID ++P ++IKGD+ S+ Sbjct: 133 IIEHDVIDEVNIYEATKLAMRKALDELNPSPDFVLID--AMPLKYTEAELSLIKGDTKSI 190 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASIIAKVTRDRLM+ YP Y F +++GY T H + G IHRL+F P+ Sbjct: 191 SIAAASIIAKVTRDRLMKDYDVAYPGYDFVNNMGYGTKNHLNGLDTIGVCPIHRLSFAPV 250 Query: 205 R 205 + Sbjct: 251 K 251 >gi|255534413|ref|YP_003094784.1| Ribonuclease HII [Flavobacteriaceae bacterium 3519-10] gi|255340609|gb|ACU06722.1| Ribonuclease HII [Flavobacteriaceae bacterium 3519-10] Length = 218 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 112/179 (62%), Gaps = 5/179 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DEVGRG L GPVV AA+ILD + ++DSKK++ K R L I + +++ Sbjct: 26 AGCDEVGRGCLCGPVVAAAVILDEKFVQNLVDDSKKLNFKTRIYLDAYIKDNVKEYAVAE 85 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPED-LPCQAFAVIKGDSIS 143 +ID+HNI A++ A++ A++ LQ P L+DG R P + +P Q +IKGD+ Sbjct: 86 LPPSHIDEHNILNASIHAMHRALDQLQTRPELILVDGNRFHPYNFIPHQC--IIKGDASI 143 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 LSIA ASI+AK RD+LM H ++P YG+ +++GY T +H++ + GP+ HR +FR Sbjct: 144 LSIACASILAKNYRDQLMIKLHDEFPHYGWKTNMGYATKEHREALNRYGPTEHHRRSFR 202 >gi|325846098|ref|ZP_08169192.1| ribonuclease HII [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481691|gb|EGC84726.1| ribonuclease HII [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 210 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/177 (46%), Positives = 111/177 (62%), Gaps = 3/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AGIDEVGRG LAGPVV A+I+ ++ GI DSKK+S KK +ELY KI +I S Sbjct: 24 IAGIDEVGRGPLAGPVVACAVIMKKDSHIEGITDSKKLSKKKMKELYGKIIDDSISYSFG 83 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A++ IDK NI +AT A+ A+E L+ P+ LID I D+ + ++KGD Sbjct: 84 YANNILIDKINIKEATKLAMKDALEGLEKTPQIVLIDAERIDTDI--KQLNIVKGDLYEY 141 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +I+ ASI+AKV RD++M K YP Y F+++ GY T KH Q I++ G IHR TF Sbjct: 142 AISCASILAKVRRDKIMENFSKIYPYYSFETNAGYGTKKHYQGIEKYGECPIHRRTF 198 >gi|237716674|ref|ZP_04547155.1| ribonuclease HII [Bacteroides sp. D1] gi|262405448|ref|ZP_06081998.1| ribonuclease HII [Bacteroides sp. 2_1_22] gi|294646229|ref|ZP_06723883.1| ribonuclease HII [Bacteroides ovatus SD CC 2a] gi|294809104|ref|ZP_06767822.1| ribonuclease HII [Bacteroides xylanisolvens SD CC 1b] gi|229442657|gb|EEO48448.1| ribonuclease HII [Bacteroides sp. D1] gi|262356323|gb|EEZ05413.1| ribonuclease HII [Bacteroides sp. 2_1_22] gi|292638447|gb|EFF56811.1| ribonuclease HII [Bacteroides ovatus SD CC 2a] gi|294443658|gb|EFG12407.1| ribonuclease HII [Bacteroides xylanisolvens SD CC 1b] Length = 200 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 103/179 (57%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL +NDSK++S K+R L E I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKGFKNELLNDSKQLSEKQRYALREVIEKEAIAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + ID+ NI +A+ A++ AV+ L P+ LIDG + V+KGD LS Sbjct: 73 VLPEEIDEINILRASFLAMHRAVDQLTTRPQHLLIDGNRFTKYPGIPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H+++P Y +D + GYPT KH+ I E+G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTFNLL 191 >gi|282854576|ref|ZP_06263911.1| ribonuclease HII [Propionibacterium acnes J139] gi|282582158|gb|EFB87540.1| ribonuclease HII [Propionibacterium acnes J139] Length = 217 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L+ Sbjct: 17 ERALTRAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 76 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A+ +S D+ + +A + + AV L V P L DG + + L Sbjct: 77 NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 135 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 136 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 195 Query: 192 GPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 196 GPSRQHRMSYANVRR 210 >gi|329964524|ref|ZP_08301578.1| ribonuclease HII [Bacteroides fluxus YIT 12057] gi|328524924|gb|EGF51976.1| ribonuclease HII [Bacteroides fluxus YIT 12057] Length = 205 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 104/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S ID+ NI A+ A++ AV+ L + P+ L+DG + V+KGD LS Sbjct: 73 VSPGEIDQINILNASFLAMHRAVDQLNIRPQHLLVDGNRFKKYRDVPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H++YP Y ++ + GYPT KH+ I E+G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNGLHEEYPYYDWNHNKGYPTKKHRAAIAERGTTPYHRMTFNLL 191 >gi|121533787|ref|ZP_01665614.1| Ribonuclease H [Thermosinus carboxydivorans Nor1] gi|121307778|gb|EAX48693.1| Ribonuclease H [Thermosinus carboxydivorans Nor1] Length = 265 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/197 (43%), Positives = 118/197 (59%), Gaps = 10/197 (5%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E++ E+ + +AG+DE GRG LAGPVVVAA+IL +NDSKK+S +R LYEK Sbjct: 69 ESVFYEQGLDLIAGVDEAGRGPLAGPVVVAAVILPKRQHLPMLNDSKKLSPHQRSLLYEK 128 Query: 75 ITSSAIISISSASHQYI-----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 I +A+ + +H I D NI++ATL +Y +ENL P+ ALID + + Sbjct: 129 IIGTAV----AVNHVVIPVCQIDSMNIYQATLQGMYRVLENLSPKPQVALIDAMPL-RKI 183 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++I GD++S SIAAASI+AKV RDR M YP YGF H GY T +H ++ Sbjct: 184 VLPHMSIINGDALSASIAAASIVAKVVRDRYMDEMDVLYPGYGFAKHKGYATPEHLAALR 243 Query: 190 EKGPSCIHRLTFRPLRN 206 GP IHR +F P+++ Sbjct: 244 RLGPCPIHRRSFEPIKS 260 >gi|314981831|gb|EFT25924.1| ribonuclease HII [Propionibacterium acnes HL110PA3] gi|315090696|gb|EFT62672.1| ribonuclease HII [Propionibacterium acnes HL110PA4] Length = 204 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L+ Sbjct: 4 ERALTRAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 63 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A+ +S D+ + +A + + AV L V P L DG + + L Sbjct: 64 NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 122 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 123 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 182 Query: 192 GPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 183 GPSRQHRMSYANVRR 197 >gi|153809167|ref|ZP_01961835.1| hypothetical protein BACCAC_03477 [Bacteroides caccae ATCC 43185] gi|149128143|gb|EDM19363.1| hypothetical protein BACCAC_03477 [Bacteroides caccae ATCC 43185] Length = 200 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/179 (43%), Positives = 103/179 (57%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I AI ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEREAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI +A+ A++ AV+ L P LIDG + VIKGD LS Sbjct: 73 VSPEEIDEINILRASFLAMHRAVDQLSTRPEHLLIDGNRFNKYPGIPHTTVIKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H++YP Y ++ + GYPT KH+ I E G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPYYDWNRNKGYPTKKHRAAIAEHGTTPYHRMTFNLL 191 >gi|297564923|ref|YP_003683895.1| Ribonuclease H [Meiothermus silvanus DSM 9946] gi|296849372|gb|ADH62387.1| Ribonuclease H [Meiothermus silvanus DSM 9946] Length = 216 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 80/196 (40%), Positives = 112/196 (57%), Gaps = 10/196 (5%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 E++ W VAG+DE GRGA AGPVVVAA+IL PF DSK +S ++RE L ++ Sbjct: 11 ERDWWEAGLRVAGVDEAGRGAWAGPVVVAAVILPRGEHPF--RDSKTLSARQREALEARV 68 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 + A+ + A+ I++ I KAT A A+E L V+P + + D + + A Sbjct: 69 KAVALGWGVGLAAVDEIERLGILKATHRAAQRALECLAVLPDALITDYLRLEREWRGPAS 128 Query: 135 AVI---KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + K D S ++AAASI+AKV RDR M +YP YGF +H GY T H++ + Sbjct: 129 LLRCPPKADRDSPTVAAASILAKVARDRHMLELEAQYPGYGFATHKGYGTTLHRENLIRL 188 Query: 192 GPSCIHRLTFRPLRNL 207 GPS +HR TF P+R L Sbjct: 189 GPSPVHRKTFAPVRCL 204 >gi|313819655|gb|EFS57369.1| ribonuclease HII [Propionibacterium acnes HL046PA2] Length = 213 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L+ Sbjct: 13 ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 72 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A+ +S D+ + +A + + AV L V P L DG + + L Sbjct: 73 NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 131 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 132 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 191 Query: 192 GPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 192 GPSRQHRMSYANVRR 206 >gi|314923942|gb|EFS87773.1| ribonuclease HII [Propionibacterium acnes HL001PA1] gi|314966113|gb|EFT10212.1| ribonuclease HII [Propionibacterium acnes HL082PA2] gi|315094908|gb|EFT66884.1| ribonuclease HII [Propionibacterium acnes HL060PA1] gi|315104180|gb|EFT76156.1| ribonuclease HII [Propionibacterium acnes HL050PA2] gi|327328010|gb|EGE69779.1| ribonuclease HII [Propionibacterium acnes HL103PA1] Length = 204 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L+ Sbjct: 4 ERALTRAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 63 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A+ +S D+ + +A + + AV L V P L DG + + L Sbjct: 64 NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 122 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 123 PDLGMWKGDSVCACVAAASIVAKVARDRIMIALDAEIPGYDFAVHKGYATALHQRRLKEL 182 Query: 192 GPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 183 GPSRQHRMSYANVRR 197 >gi|289427787|ref|ZP_06429498.1| ribonuclease HII [Propionibacterium acnes J165] gi|289159051|gb|EFD07244.1| ribonuclease HII [Propionibacterium acnes J165] Length = 217 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L+ Sbjct: 17 ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 76 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A+ +S D+ + +A + + AV L V P L DG + + L Sbjct: 77 NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 135 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 136 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 195 Query: 192 GPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 196 GPSRQHRMSYANVRR 210 >gi|254797053|ref|YP_003081891.1| ribonuclease HII [Neorickettsia risticii str. Illinois] gi|254590300|gb|ACT69662.1| ribonuclease HII [Neorickettsia risticii str. Illinois] Length = 195 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/185 (42%), Positives = 108/185 (58%), Gaps = 6/185 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84 +AG+DEVGRG LAGPVV A+IL N IP DSK +S R YEKI S++ +I Sbjct: 11 IAGVDEVGRGCLAGPVVACAVILTENLAIP---GDSKVLSPAARLSWYEKIMSNSYNAIG 67 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC--QAFAVIKGDSI 142 ++ + I+ NI ATL A+ A+E L V+P + LIDGR I + + +V+ GD I Sbjct: 68 MSTVKEIETMNILNATLLAMERALERLPVVPTTVLIDGRDIINNAAKYKEVKSVVSGDKI 127 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I AASI+AKVTRDR M YP Y + + GY T +H + + + G + HR F Sbjct: 128 YEEIKAASIVAKVTRDRWMEELDLTYPYYRWRFNKGYGTKEHLEALAKYGVTDHHRRKFA 187 Query: 203 PLRNL 207 P++ + Sbjct: 188 PVKRM 192 >gi|315917438|ref|ZP_07913678.1| ribonuclease HII [Fusobacterium gonidiaformans ATCC 25563] gi|313691313|gb|EFS28148.1| ribonuclease HII [Fusobacterium gonidiaformans ATCC 25563] Length = 211 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/182 (42%), Positives = 108/182 (59%), Gaps = 6/182 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84 + G+DE GRG LAGPVV AA +L + I DSKK++ KKRE L+ I + I Sbjct: 21 IVGVDEAGRGPLAGPVVAAAALLKQYDRSLEPIQDSKKLTEKKREALFSVIPQFFYVGIG 80 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQ----VIPRSALIDGRSIPEDLPCQAFAVIKGD 140 AS + I+K+NI AT A+ A+ NL+ + + L+DG + + A++KGD Sbjct: 81 QASVEEIEKYNILNATFLAMRRALGNLEEQVEIQDATILVDGNFTIRECERKQEAIVKGD 140 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHRL 199 + SLSIAAASI+AKVTRD + ++YPDY F+ H GY T H++ I GP +HR Sbjct: 141 AKSLSIAAASIMAKVTRDHELVELAEQYPDYFFEKHKGYGTKVHREKILSLGPIPGVHRD 200 Query: 200 TF 201 +F Sbjct: 201 SF 202 >gi|257466281|ref|ZP_05630592.1| ribonuclease HII [Fusobacterium gonidiaformans ATCC 25563] Length = 210 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/182 (42%), Positives = 108/182 (59%), Gaps = 6/182 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84 + G+DE GRG LAGPVV AA +L + I DSKK++ KKRE L+ I + I Sbjct: 20 IVGVDEAGRGPLAGPVVAAAALLKQYDRSLEPIQDSKKLTEKKREALFSVIPQFFYVGIG 79 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQ----VIPRSALIDGRSIPEDLPCQAFAVIKGD 140 AS + I+K+NI AT A+ A+ NL+ + + L+DG + + A++KGD Sbjct: 80 QASVEEIEKYNILNATFLAMRRALGNLEEQVEIQDATILVDGNFTIRECERKQEAIVKGD 139 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHRL 199 + SLSIAAASI+AKVTRD + ++YPDY F+ H GY T H++ I GP +HR Sbjct: 140 AKSLSIAAASIMAKVTRDHELVELAEQYPDYFFEKHKGYGTKVHREKILSLGPIPGVHRD 199 Query: 200 TF 201 +F Sbjct: 200 SF 201 >gi|282881109|ref|ZP_06289796.1| ribonuclease HII [Prevotella timonensis CRIS 5C-B1] gi|281304913|gb|EFA96986.1| ribonuclease HII [Prevotella timonensis CRIS 5C-B1] Length = 200 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/186 (39%), Positives = 116/186 (62%), Gaps = 5/186 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG + AA+IL + +NDSK+++ KKR EL E I +A+ ++ Sbjct: 13 AGCDEAGRGCLAGSIFAAAVILPSDYDNHVLNDSKQLTRKKRNELREVIMQAAVAWAVGE 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIP-EDLPCQAFAVIKGDSIS 143 S Q ID+ NI +A+ A++ A++ L+V P++ ++DG R P D+P ++KGD+ Sbjct: 73 VSPQEIDEINILRASFLAMHRALDQLKVRPQAIIVDGNRFTPYHDIPYTT--IVKGDAKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SIAAASI+AK RD M ++YP Y ++S++GYPT +H+ I++ G + HR ++ Sbjct: 131 QSIAAASILAKTFRDDYMDRLAEEYPQYHWESNMGYPTREHRAAIQQYGVTPYHRRSYNL 190 Query: 204 LRNLSV 209 L N + Sbjct: 191 LGNTEL 196 >gi|237756157|ref|ZP_04584727.1| ribonuclease HII [Sulfurihydrogenibium yellowstonense SS-5] gi|237691683|gb|EEP60721.1| ribonuclease HII [Sulfurihydrogenibium yellowstonense SS-5] Length = 197 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/177 (44%), Positives = 110/177 (62%), Gaps = 3/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDE GRG LAGP+V+A++I + PF +DSK +S K+RE L+EKI A I+I+ Sbjct: 16 IVGIDEAGRGPLAGPLVIASVIFPKHQKPFIHSDSKGLSEKEREYLFEKIHDYAEEINIT 75 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + IDK I A + + +++L+ AL+D + E + +IKGD IS Sbjct: 76 IIENTEIDKLGISNAAKIYMENNLKSLKSKWDIALVDFVKLDESI--NHLPLIKGDEISH 133 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +IAAASIIAKV RDR+M +KYP++ FD H GY T +H Q IK+ G + IHR +F Sbjct: 134 TIAAASIIAKVVRDRIMIEYKEKYPNFSFDKHKGYATKQHYQEIKKFGITPIHRRSF 190 >gi|33519750|ref|NP_878582.1| ribonuclease HII [Candidatus Blochmannia floridanus] gi|39932315|sp|Q7VRD2|RNH2_BLOFL RecName: Full=Ribonuclease HII; Short=RNase HII gi|33504095|emb|CAD83356.1| ribonuclease HII [Candidatus Blochmannia floridanus] Length = 205 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/189 (41%), Positives = 113/189 (59%), Gaps = 9/189 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81 VAG+DEVG G+L G VV +A+++ D + G+ DSK +S+KKR I ++ Sbjct: 15 VAGVDEVGCGSLVGAVVASAVLMLYPDQEQLFSGLIDSKALSNKKRLRFCNYIQKYSLHW 74 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR---SIPEDLPCQAFAVIK 138 SI + ID+ NI +A L +I A+ NL +IP LIDG+ S+ +++ Q F +K Sbjct: 75 SIGMVNVTEIDQLNIFQARLLSIKRAICNLSMIPDLVLIDGKHAPSLNKNILYQCF--VK 132 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GDS I+AASIIAKVTRD+ M + H +YP YGF + GY T H + + GP+ HR Sbjct: 133 GDSRIPVISAASIIAKVTRDQAMMMLHTQYPKYGFHRNKGYATVFHLKQLDLYGPTIYHR 192 Query: 199 LTFRPLRNL 207 TF P++ + Sbjct: 193 KTFAPVKYM 201 >gi|218264672|ref|ZP_03478435.1| hypothetical protein PRABACTJOHN_04144 [Parabacteroides johnsonii DSM 18315] gi|218221859|gb|EEC94509.1| hypothetical protein PRABACTJOHN_04144 [Parabacteroides johnsonii DSM 18315] Length = 199 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/176 (43%), Positives = 102/176 (57%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL P+ +NDSK++S KKR L I AI ++ Sbjct: 13 AGCDEAGRGCLAGPVYAAAVILPPDFHNEDLNDSKQLSEKKRYALRPIIEQEAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI KA+ A++ A++ L+V P LIDG + V+KGD LS Sbjct: 73 VTPEEIDRINILKASFLAMHRAIDGLKVKPEHLLIDGNRFTPYPGVKHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M +YP Y + + GYPT H++ I+E G + HR TF Sbjct: 133 IAAASILAKTYRDDYMNSLDLEYPAYHWKENKGYPTKAHREAIRECGITPYHRKTF 188 >gi|116512136|ref|YP_809352.1| ribonuclease HII [Lactococcus lactis subsp. cremoris SK11] gi|123025377|sp|Q02YP2|RNH2_LACLS RecName: Full=Ribonuclease HII; Short=RNase HII gi|116107790|gb|ABJ72930.1| RNase HII [Lactococcus lactis subsp. cremoris SK11] Length = 258 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/197 (42%), Positives = 119/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E E + + + +AGIDEVGRGALAGPVV AA+IL N G+NDSKK+ K + Sbjct: 59 LEFEKELYSQEIELIAGIDEVGRGALAGPVVTAAVILPKNCKIRGLNDSKKVPKSKHHAI 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +I A+ I I + ID+ NI++AT A+ AV L + P LID + DLP Sbjct: 119 LSEIQEKALAIGIGIVDAEKIDEVNIYEATKIAMIQAVSKLSLKPEHLLIDAMVL--DLP 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD+ S SIAAASI+AKVTRD +M+ ++P+Y F+ + GY TAKH + + Sbjct: 177 IAQTKIIHGDARSASIAAASIVAKVTRDEMMKDFALEFPEYDFEHNAGYGTAKHLAALTK 236 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR ++ P++++ Sbjct: 237 YGITRIHRKSYEPIKSM 253 >gi|50842913|ref|YP_056140.1| ribonuclease HII [Propionibacterium acnes KPA171202] gi|81611490|sp|Q6A7T3|RNH2_PROAC RecName: Full=Ribonuclease HII; Short=RNase HII gi|50840515|gb|AAT83182.1| ribonuclease HII [Propionibacterium acnes KPA171202] gi|313763669|gb|EFS35033.1| ribonuclease HII [Propionibacterium acnes HL013PA1] gi|313794063|gb|EFS42087.1| ribonuclease HII [Propionibacterium acnes HL110PA1] gi|313801450|gb|EFS42701.1| ribonuclease HII [Propionibacterium acnes HL110PA2] gi|313807870|gb|EFS46351.1| ribonuclease HII [Propionibacterium acnes HL087PA2] gi|313813532|gb|EFS51246.1| ribonuclease HII [Propionibacterium acnes HL025PA1] gi|313816846|gb|EFS54560.1| ribonuclease HII [Propionibacterium acnes HL059PA1] gi|313822239|gb|EFS59953.1| ribonuclease HII [Propionibacterium acnes HL036PA1] gi|313823528|gb|EFS61242.1| ribonuclease HII [Propionibacterium acnes HL036PA2] gi|313825855|gb|EFS63569.1| ribonuclease HII [Propionibacterium acnes HL063PA1] gi|313829535|gb|EFS67249.1| ribonuclease HII [Propionibacterium acnes HL063PA2] gi|313839830|gb|EFS77544.1| ribonuclease HII [Propionibacterium acnes HL086PA1] gi|314914671|gb|EFS78502.1| ribonuclease HII [Propionibacterium acnes HL005PA4] gi|314919216|gb|EFS83047.1| ribonuclease HII [Propionibacterium acnes HL050PA1] gi|314920874|gb|EFS84705.1| ribonuclease HII [Propionibacterium acnes HL050PA3] gi|314924571|gb|EFS88402.1| ribonuclease HII [Propionibacterium acnes HL036PA3] gi|314930442|gb|EFS94273.1| ribonuclease HII [Propionibacterium acnes HL067PA1] gi|314954505|gb|EFS98911.1| ribonuclease HII [Propionibacterium acnes HL027PA1] gi|314957375|gb|EFT01478.1| ribonuclease HII [Propionibacterium acnes HL002PA1] gi|314962003|gb|EFT06104.1| ribonuclease HII [Propionibacterium acnes HL002PA2] gi|314963583|gb|EFT07683.1| ribonuclease HII [Propionibacterium acnes HL082PA1] gi|314968585|gb|EFT12683.1| ribonuclease HII [Propionibacterium acnes HL037PA1] gi|314978796|gb|EFT22890.1| ribonuclease HII [Propionibacterium acnes HL072PA2] gi|314986438|gb|EFT30530.1| ribonuclease HII [Propionibacterium acnes HL005PA2] gi|314990798|gb|EFT34889.1| ribonuclease HII [Propionibacterium acnes HL005PA3] gi|315079437|gb|EFT51430.1| ribonuclease HII [Propionibacterium acnes HL053PA2] gi|315083537|gb|EFT55513.1| ribonuclease HII [Propionibacterium acnes HL027PA2] gi|315087217|gb|EFT59193.1| ribonuclease HII [Propionibacterium acnes HL002PA3] gi|315089391|gb|EFT61367.1| ribonuclease HII [Propionibacterium acnes HL072PA1] gi|315099296|gb|EFT71272.1| ribonuclease HII [Propionibacterium acnes HL059PA2] gi|315100529|gb|EFT72505.1| ribonuclease HII [Propionibacterium acnes HL046PA1] gi|315106699|gb|EFT78675.1| ribonuclease HII [Propionibacterium acnes HL030PA1] gi|315108924|gb|EFT80900.1| ribonuclease HII [Propionibacterium acnes HL030PA2] gi|327329811|gb|EGE71567.1| ribonuclease HII [Propionibacterium acnes HL096PA3] gi|327334326|gb|EGE76040.1| ribonuclease HII [Propionibacterium acnes HL097PA1] gi|327446256|gb|EGE92910.1| ribonuclease HII [Propionibacterium acnes HL013PA2] gi|327451918|gb|EGE98572.1| ribonuclease HII [Propionibacterium acnes HL092PA1] gi|327455047|gb|EGF01702.1| ribonuclease HII [Propionibacterium acnes HL087PA3] gi|327457665|gb|EGF04320.1| ribonuclease HII [Propionibacterium acnes HL083PA2] gi|328755121|gb|EGF68737.1| ribonuclease HII [Propionibacterium acnes HL087PA1] gi|328758100|gb|EGF71716.1| ribonuclease HII [Propionibacterium acnes HL025PA2] gi|332675850|gb|AEE72666.1| ribonuclease HII [Propionibacterium acnes 266] Length = 204 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L+ Sbjct: 4 ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 63 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A+ +S D+ + +A + + AV L V P L DG + + L Sbjct: 64 NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 122 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 123 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 182 Query: 192 GPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 183 GPSRQHRMSYANVRR 197 >gi|296284404|ref|ZP_06862402.1| ribonuclease HII [Citromicrobium bathyomarinum JL354] Length = 212 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/187 (39%), Positives = 107/187 (57%), Gaps = 9/187 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 V G+DE GRG LAGPVV +A+ L P G++DSKK+ KR L E++ ++ Sbjct: 20 VVGVDEAGRGPLAGPVVASAVALCKPR-PAGLDDSKKLGALKRSALDEQVRRRCAWGVAV 78 Query: 86 ASHQYIDKHNIHKATLDAIYHAV----ENLQVIPRSALIDGRSIP----EDLPCQAFAVI 137 + ID+ NI AT+ A+ AV + + P L+DG P E A A++ Sbjct: 79 VEPEEIDRLNIFGATMLAMTLAVTRVAQAMGRAPDMVLVDGNLTPSGRCEGWCWPARAIV 138 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD+ +I+AASI+AK RDRLM A ++YP YG++ + GY TA+H ++E GP +H Sbjct: 139 GGDAKEPAISAASIVAKEWRDRLMIAAAREYPHYGWERNKGYGTAEHLSALREHGPCALH 198 Query: 198 RLTFRPL 204 R +F P+ Sbjct: 199 RRSFAPV 205 >gi|188580997|ref|YP_001924442.1| ribonuclease H [Methylobacterium populi BJ001] gi|179344495|gb|ACB79907.1| Ribonuclease H [Methylobacterium populi BJ001] Length = 232 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/182 (42%), Positives = 108/182 (59%), Gaps = 9/182 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYEKITSSAII 81 V G DEVGRGAL GPV+VAA+ DP P I +DSK++ RE L I + A + Sbjct: 35 VIGCDEVGRGALCGPVMVAAVWFDPLAFPAEILARLDDSKRLDRATREALTPLIRAHARV 94 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPEDL-PCQAFAVIKG 139 S+++ S +D+ N+ ATLDA+ AV L + + L+DGR IP + PC+A V+ G Sbjct: 95 SLAAGSRALVDRVNVRGATLDAMRRAVAGLG-LDAAVLVDGRDGIPGLVQPCRA--VVGG 151 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D + IAAASI+AK RD LMR ++P Y ++ + GY TA H + +G S HR+ Sbjct: 152 DRLVPQIAAASIVAKTCRDDLMRRLALRHPAYAWERNAGYGTAAHLAGLTAQGRSPHHRV 211 Query: 200 TF 201 +F Sbjct: 212 SF 213 >gi|242277680|ref|YP_002989809.1| ribonuclease H [Desulfovibrio salexigens DSM 2638] gi|242120574|gb|ACS78270.1| Ribonuclease H [Desulfovibrio salexigens DSM 2638] Length = 218 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/185 (41%), Positives = 112/185 (60%), Gaps = 9/185 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83 AGIDE GRG LAGPVV A+IL + ++P G+ DSKK+ R+ L +I A+ ++ Sbjct: 16 TAGIDEAGRGCLAGPVVAGAVILPEEYDLP-GLTDSKKLDEAARDRLAVEIKKQAVCWAL 74 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPED-----LPCQAFAVI 137 + Q +D+ NI +AT A+ +V +L+V P+ ++DG ++IP + AV+ Sbjct: 75 GVSRAQVVDQINILQATFRAMGRSVLHLKVKPQMLMVDGNKTIPAPHLNGVAGFRQEAVV 134 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD +I+AASI+AK RD+LM K+Y YGF+ H GY T H +KE GP +H Sbjct: 135 KGDLKIPAISAASILAKTFRDKLMVQLAKRYAAYGFEIHKGYGTKVHLDALKEHGPCAVH 194 Query: 198 RLTFR 202 R+TF+ Sbjct: 195 RMTFK 199 >gi|325673470|ref|ZP_08153161.1| ribonuclease HII [Rhodococcus equi ATCC 33707] gi|325555491|gb|EGD25162.1| ribonuclease HII [Rhodococcus equi ATCC 33707] Length = 212 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/191 (39%), Positives = 110/191 (57%), Gaps = 4/191 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREEL 71 +E+ + + PVAG+DE GRGA AGP+VVAA +L P+ ++DSKK++ K R+EL Sbjct: 1 MESALVRSGLGPVAGVDEAGRGACAGPLVVAACVLGSKPHAALARLDDSKKLTEKVRDEL 60 Query: 72 YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ S+ +D+ +H A ++ + AV L V P L DG +P LP Sbjct: 61 FPVIKRLAVAWSVVEIPAAEVDRIGVHVANIEGMRRAVAGLTVAPGYVLTDGFRVP-GLP 119 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+ + IAAAS++AKV+RDR M + P YGF H GY TA H + E Sbjct: 120 APSLPVIGGDASAACIAAASVLAKVSRDRTMVALDDELPGYGFAGHKGYSTAVHTAALNE 179 Query: 191 KGPSCIHRLTF 201 GP HR+++ Sbjct: 180 LGPCREHRMSY 190 >gi|256847171|ref|ZP_05552617.1| ribonuclease HII [Lactobacillus coleohominis 101-4-CHN] gi|256715835|gb|EEU30810.1| ribonuclease HII [Lactobacillus coleohominis 101-4-CHN] Length = 259 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/191 (42%), Positives = 117/191 (61%), Gaps = 8/191 (4%) Query: 20 EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E+ +W VAG+DEVGRG LAGPVV A+ILD + DSK +S ++RE LY + Sbjct: 64 ERALWQAGNQYVAGMDEVGRGPLAGPVVTCAVILDDRFDLVEVTDSKMLSRRERERLYLR 123 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A+ +SI+ S ID+ NI++AT DA+ AV L+ P ++D ++P L Sbjct: 124 IVDEAVEVSIAVNSPAVIDQLNIYRATQDAMIRAVHELRHQPSHLIVD--AVPLSLSIPQ 181 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGD S+S+AAASI+AK RD LM + YP Y F++++GY T +H +++ G Sbjct: 182 TTLIKGDQKSISVAAASIVAKEYRDHLMADYARLYPGYDFENNMGYGTKQHLAGLEKHGV 241 Query: 194 SCIHRLTFRPL 204 + IHR TF P+ Sbjct: 242 TPIHRRTFAPV 252 >gi|288925319|ref|ZP_06419253.1| ribonuclease HII [Prevotella buccae D17] gi|315606714|ref|ZP_07881724.1| ribonuclease HII [Prevotella buccae ATCC 33574] gi|288337790|gb|EFC76142.1| ribonuclease HII [Prevotella buccae D17] gi|315251569|gb|EFU31548.1| ribonuclease HII [Prevotella buccae ATCC 33574] Length = 201 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/183 (43%), Positives = 114/183 (62%), Gaps = 9/183 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 AG DE GRG LAG V AA+IL D NN +NDSK++SHK+R EL E+I A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPRDYNNP--ALNDSKQLSHKRRNELREQIMHDAVAWAV 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIP-EDLPCQAFAVIKGDS 141 + + ID+ NI KA+ A++ A++ L V P + ++DG R +P DLP A ++KGD Sbjct: 71 GVVTPEEIDRINILKASFLAMHRALDALNVRPEAVIVDGNRFVPYGDLPYTA--IVKGDG 128 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASI+AK RD M ++YP Y ++ ++GYPT KH++ I+ G HR ++ Sbjct: 129 KYQSIAAASILAKTFRDDYMCDLARRYPYYDWEHNMGYPTKKHREGIRLHGICPYHRKSY 188 Query: 202 RPL 204 L Sbjct: 189 NLL 191 >gi|329954154|ref|ZP_08295249.1| ribonuclease HII [Bacteroides clarus YIT 12056] gi|328528131|gb|EGF55111.1| ribonuclease HII [Bacteroides clarus YIT 12056] Length = 199 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/181 (42%), Positives = 108/181 (59%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFENDLLNDSKQLTEKQRYALREVIEKEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143 S + IDK NI A+ A++ AV+ LQ+ P+ LIDG + D+P V+KGD Sbjct: 73 VSPKEIDKINILNASFLAMHRAVDRLQLRPQHLLIDGNRFRKYGDIPHTT--VVKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAASI+AK RD M H+++P Y ++ + GYPT KH+ I +G + HR+TF Sbjct: 131 LSIAAASILAKTYRDDYMNRLHEEFPYYDWNHNKGYPTKKHRAAIAGRGTTPYHRMTFNL 190 Query: 204 L 204 L Sbjct: 191 L 191 >gi|189459842|ref|ZP_03008627.1| hypothetical protein BACCOP_00472 [Bacteroides coprocola DSM 17136] gi|189433452|gb|EDV02437.1| hypothetical protein BACCOP_00472 [Bacteroides coprocola DSM 17136] Length = 200 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/181 (43%), Positives = 105/181 (58%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSKK++ +R L E I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPSDYENQQLNDSKKLTEHQRYALREVIERDAIAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143 + Q IDK NI A+ A++ A++ L+V P+ LIDG EDLP V+KGD Sbjct: 73 VTPQEIDKINILNASFLAMHRAIDQLKVRPQHLLIDGNRFNKYEDLPHTT--VVKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAASI+AK RD M ++YP Y + + GYPT KH++ I G + HR+T+ Sbjct: 131 LSIAAASILAKTYRDDYMNRLAEEYPLYDWQKNKGYPTKKHREAIARYGTTPYHRMTYNL 190 Query: 204 L 204 L Sbjct: 191 L 191 >gi|209545123|ref|YP_002277352.1| ribonuclease HII [Gluconacetobacter diazotrophicus PAl 5] gi|209532800|gb|ACI52737.1| Ribonuclease H [Gluconacetobacter diazotrophicus PAl 5] Length = 224 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/189 (41%), Positives = 112/189 (59%), Gaps = 6/189 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISHKKREELYEKITSS--AI 80 VAG+DEVGRG LAGPVV AA++ D P + ++DSKK++ R Y + ++ Sbjct: 14 VAGVDEVGRGPLAGPVVAAAVMFDSGVPRRLATQLDDSKKLTEAARLRAYAALHAARGVH 73 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I++++AS I + NI +A A+ AV L P L+DG + P D C A V+ GD Sbjct: 74 IAVAAASVSEIARLNILRAAFLAMRRAVARLPHQPDMVLVDGNAAP-DFGCPAQCVVGGD 132 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 SLSIAAASI+AKV RDRLM ++P YG++ + GY TA+H+ + G + HR Sbjct: 133 GESLSIAAASIVAKVVRDRLMARLSCRWPGYGWERNAGYGTAEHRAALCRAGTTPHHREA 192 Query: 201 FRPLRNLSV 209 F +R L++ Sbjct: 193 FGLVRQLTL 201 >gi|303327966|ref|ZP_07358405.1| ribonuclease HII [Desulfovibrio sp. 3_1_syn3] gi|302861792|gb|EFL84727.1| ribonuclease HII [Desulfovibrio sp. 3_1_syn3] Length = 230 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/192 (40%), Positives = 103/192 (53%), Gaps = 14/192 (7%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 PVAGIDE GRG LAGPVV AA+IL G+ DSK +S K R+ L +I A+ + Sbjct: 24 PVAGIDEAGRGCLAGPVVAAAVILPAVYELPGLTDSKALSAKARDILAPRIRECALAWGL 83 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF--------- 134 + I++ NI +AT +A+ AV L++ P LIDG + D F Sbjct: 84 GVVWPRRIERINILQATFEAMSRAVGVLRLTPGRLLIDGNKVLPDAVLTLFWRTGHTAPP 143 Query: 135 ----AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 AV+ GD I+AASI+AK RDRLM +++P YG + H GY T H ++ Sbjct: 144 PLQQAVVGGDKSEDVISAASILAKTFRDRLMLHLGRRWPGYGLEEHKGYGTKAHYAALRR 203 Query: 191 KGPSCIHRLTFR 202 GP HRLTFR Sbjct: 204 LGPCPQHRLTFR 215 >gi|212695498|ref|ZP_03303626.1| hypothetical protein ANHYDRO_00014 [Anaerococcus hydrogenalis DSM 7454] gi|212677498|gb|EEB37105.1| hypothetical protein ANHYDRO_00014 [Anaerococcus hydrogenalis DSM 7454] Length = 210 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/177 (45%), Positives = 111/177 (62%), Gaps = 3/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AGIDEVGRG LAGPVV A+++ ++ G+ DSKK+S KK +ELY KI +I S Sbjct: 24 IAGIDEVGRGPLAGPVVACAVVMKKDSHIEGVTDSKKLSKKKMKELYGKIIDDSISYSFG 83 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A++ IDK NI +AT A+ A+E L+ P+ LID I D+ + ++KGD Sbjct: 84 YANNVLIDKINIKEATKLAMKDALERLEKTPQIVLIDAERIDTDI--KQLNIVKGDLYEY 141 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +I+ ASI+AKV RD++M K YP Y F+++ GY T KH Q I++ G IHR TF Sbjct: 142 AISCASILAKVRRDKIMENFSKIYPYYSFETNAGYGTKKHYQGIEKYGECPIHRKTF 198 >gi|312139224|ref|YP_004006560.1| ribonuclease hii rnhb [Rhodococcus equi 103S] gi|311888563|emb|CBH47875.1| ribonuclease HII RnhB [Rhodococcus equi 103S] Length = 230 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/191 (39%), Positives = 110/191 (57%), Gaps = 4/191 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREEL 71 +E+ + + PVAG+DE GRGA AGP+VVAA +L P+ ++DSKK++ K R+EL Sbjct: 19 MESALVRSGLGPVAGVDEAGRGACAGPLVVAACVLGSKPHAALARLDDSKKLTEKVRDEL 78 Query: 72 YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ S+ +D+ +H A ++ + AV L V P L DG +P LP Sbjct: 79 FPVIKRLALAWSVVEIPAAEVDRIGVHVANIEGMRRAVAGLTVAPGYVLTDGFRVP-GLP 137 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+ + IAAAS++AKV+RDR M + P YGF H GY TA H + E Sbjct: 138 APSLPVIGGDASAACIAAASVLAKVSRDRTMVALDDELPGYGFAGHKGYSTAVHTAALNE 197 Query: 191 KGPSCIHRLTF 201 GP HR+++ Sbjct: 198 LGPCREHRMSY 208 >gi|315185664|gb|EFU19432.1| RNase HII [Spirochaeta thermophila DSM 6578] Length = 193 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/183 (43%), Positives = 106/183 (57%), Gaps = 8/183 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 V GIDEVGRG LAGPVV AA++L P G+ DSKK+S ++RE L+ I +A Sbjct: 4 VCGIDEVGRGPLAGPVVAAAVVLTPGTSLPGLKDSKKLSPEERERLFPLIQEAAAAVGVG 63 Query: 86 ASHQY-IDKHNIHKATLDAIYHAVENL------QVIPRSALIDGRSIPEDLPCQAFAVIK 138 + + +D+ NIH ATL A+ A E L ++P +IDGR P + A AV+K Sbjct: 64 WAWPHEVDRLNIHNATLKAMERAYEMLIQKLSPSLVPTEVVIDGRHAPPSI-THARAVVK 122 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 D+ + AASI+AKV RD M+I H+ P+Y F H GYPT H++ I G IHR Sbjct: 123 ADTFVPEVMAASIVAKVFRDEWMKIYHRFLPEYTFSQHKGYPTRLHRERILTIGSCPIHR 182 Query: 199 LTF 201 TF Sbjct: 183 RTF 185 >gi|940885|gb|AAC44577.1| RnhB [Vibrio cholerae C6706] Length = 162 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/157 (45%), Positives = 98/157 (62%), Gaps = 2/157 (1%) Query: 50 PNNIPFGINDSKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAV 108 PN G+NDSKK+S KKR L+ +I A+ ++ S Q ID+ NI +AT+ A+ AV Sbjct: 1 PNRPIMGLNDSKKLSEKKRLALFPEIQVKALAWAVGRCSPQEIDELNIFQATMVAMQRAV 60 Query: 109 ENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 L++ P LIDG IP+ LP +A AV+KGD I+AASIIAKV RD+ M K+Y Sbjct: 61 AGLRIQPDLVLIDGNKIPK-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQY 119 Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 P +GF +H GYPTA H I++ G HR +F P++ Sbjct: 120 PQFGFANHKGYPTAAHFAAIEQHGVIEQHRKSFGPVK 156 >gi|326791381|ref|YP_004309202.1| ribonuclease H [Clostridium lentocellum DSM 5427] gi|326542145|gb|ADZ84004.1| Ribonuclease H [Clostridium lentocellum DSM 5427] Length = 254 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/181 (43%), Positives = 115/181 (63%), Gaps = 1/181 (0%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 N + + GIDEVGRG LAGPVV AA+IL + G+ DSKK++ KRE+LY++I S+A+ Sbjct: 67 NQYILVGIDEVGRGPLAGPVVAAAVILPYDTNLVGLKDSKKLTEPKREKLYDQIQSNALG 126 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I I ID+ NI +AT +A+ HA+ L++ L+DG + + + A+I GD Sbjct: 127 IGIGIVDADRIDEINILQATFEAMRHALSELKIDYDRVLVDGDKVIPKIQIRQEAIIGGD 186 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S SIAAAS+IAKVTRDR+M+ Y Y ++++ GY + KH + I+ G + +HR + Sbjct: 187 DKSASIAAASVIAKVTRDRMMKAYANTYDKYDWENNKGYGSQKHYEAIRNYGITPLHRKS 246 Query: 201 F 201 F Sbjct: 247 F 247 >gi|269127623|ref|YP_003300993.1| Ribonuclease H [Thermomonospora curvata DSM 43183] gi|268312581|gb|ACY98955.1| Ribonuclease H [Thermomonospora curvata DSM 43183] Length = 232 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/194 (41%), Positives = 115/194 (59%), Gaps = 6/194 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKRE 69 + LE ++ PVAG+DE GRGA AGP+VVAA+IL G+ DSK ++ ++RE Sbjct: 16 YGLERALQHAGFSPVAGVDEAGRGACAGPLVVAAVILPSGRRALIDGLTDSKLLTARRRE 75 Query: 70 ELYEKITSSAIISISSASHQY-IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE- 127 ELY +I A+ + ++ ID+ +H+ + + A+ L+V P L DG +P Sbjct: 76 ELYAQIVERAVAWATVIIPRHDIDRLGLHQCNITGMRRALAQLEVRPGYVLSDGFRVPGL 135 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D+P AV KGD ++ +AAAS++AKVTRDRLM H++YP YGF H GY T +H Sbjct: 136 DVP--GLAVPKGDCVAACVAAASVVAKVTRDRLMVELHERYPQYGFAVHKGYVTREHTAA 193 Query: 188 IKEKGPSCIHRLTF 201 + GP HRL+F Sbjct: 194 LSAHGPCPEHRLSF 207 >gi|288962307|ref|YP_003452602.1| ribonuclease HII [Azospirillum sp. B510] gi|288914573|dbj|BAI76058.1| ribonuclease HII [Azospirillum sp. B510] Length = 221 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 89/205 (43%), Positives = 120/205 (58%), Gaps = 9/205 (4%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKI 63 +RP LEA V GIDEVGRG L GPVV AA++L +P I+DSK + Sbjct: 14 QRPDLSLEAGFGAGRR--VCGIDEVGRGPLCGPVVAAAVVLPAEGLPPEIAAQIDDSKAV 71 Query: 64 SHKKREELYEKITSSAIISISSASHQYI-DKHNIHKATLDAIYHAVENL-QVIPRSALID 121 + + REE+ I + A+ + + D+ NIH+ATL A+ A E L V P +ALID Sbjct: 72 TRRLREEIEPAIRAHALAFAIAEASAAEIDELNIHRATLLAMRRAYEALPGVPPDAALID 131 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 G+ P D+ C+ AV+KGDS SLSIAAASI+AKV RD M YP YG+D + GYPT Sbjct: 132 GKFTP-DIACERVAVVKGDSRSLSIAAASILAKVARDSEMLRLSAVYPHYGWDRNAGYPT 190 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRN 206 +H + G + HR++F P++ Sbjct: 191 PEHLDALTRHGVTPHHRVSFAPVKR 215 >gi|313619218|gb|EFR90981.1| ribonuclease HII [Listeria innocua FSL S4-378] Length = 261 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 85/182 (46%), Positives = 115/182 (63%), Gaps = 3/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG LAGPVV AA+IL + GINDSK+++ KR+ L++ I AI I I Sbjct: 73 IAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLNEAKRDILFDVIKEEAISIGIG 132 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 H ID+ NI++AT A+ A+E L P LID ++P ++IKGD+ S+ Sbjct: 133 IIDHDVIDQVNIYEATKIAMRTALEELNPAPDFVLID--AMPLKYSEAELSLIKGDTKSI 190 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASIIAKVTRDR+M+ YP Y F +++GY T KH + G IHRL+F P+ Sbjct: 191 SIAAASIIAKVTRDRMMQQYDALYPGYDFVNNMGYGTKKHLNGLDTIGICPIHRLSFSPV 250 Query: 205 RN 206 + Sbjct: 251 KE 252 >gi|198274378|ref|ZP_03206910.1| hypothetical protein BACPLE_00523 [Bacteroides plebeius DSM 17135] gi|198272744|gb|EDY97013.1| hypothetical protein BACPLE_00523 [Bacteroides plebeius DSM 17135] Length = 200 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 100/179 (55%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL P +NDSKK++ K+R EL I A ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPPGFQNEMLNDSKKLTEKQRYELRTVIEKEATAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + IDK NI A+ A++ AV L+V P+ LIDG ++KGD LS Sbjct: 73 VTPEEIDKINILNASFLAMHRAVSQLKVTPQHLLIDGNRFNPYPGIPHTTIVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H++YP Y + + GYPT KH+ I G + HR++F L Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPMYDWKGNKGYPTKKHRAAIAAYGTTPYHRMSFNLL 191 >gi|330752641|emb|CBL87585.1| ribonuclease HII [uncultured Flavobacteria bacterium] Length = 199 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/179 (43%), Positives = 110/179 (61%), Gaps = 5/179 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 GIDE GRG LAGPV AA+IL N I+DSKK+S KREEL + I ++I SI Sbjct: 13 CGIDEAGRGCLAGPVTAAAVILKANFKHDLIDDSKKLSKIKREELSKIIKENSIAYSIQF 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143 + ID+ NI A++ A++ ++NL V P +IDG + D+P + VIKGD Sbjct: 73 IDSRKIDEVNILNASILAMHKCIKNLSVKPEFLIIDGNRFKKYKDIPHET--VIKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 L+IA+ASI+AK RD M+ KK+P+Y + + GYPT H++ IK+ G + HR +F+ Sbjct: 131 LNIASASILAKHARDYYMQKISKKFPNYHWFKNNGYPTKHHKEAIKKHGLTKYHRKSFK 189 >gi|189219283|ref|YP_001939924.1| Ribonuclease HII [Methylacidiphilum infernorum V4] gi|189186141|gb|ACD83326.1| Ribonuclease HII [Methylacidiphilum infernorum V4] Length = 226 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 73/180 (40%), Positives = 108/180 (60%), Gaps = 5/180 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREELYEKITSSAIISI 83 +AGIDEVGRGA+AGPVV AA+IL P ++PF + DSK + KKR+++ + + IS Sbjct: 20 IAGIDEVGRGAIAGPVVAAAVIL-PQDLPFHKYLKDSKAVEEKKRKQVVQWLLKEGRISF 78 Query: 84 SSASH--QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 + I++ NIH + L A+ A+ L+ P L+DG P L + ++ GD+ Sbjct: 79 GLGFSFVEEIERINIHGSCLLAMRRAISCLEERPDILLVDGIFSPPHLSIPSLTIVGGDA 138 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAAS++AKV+RD M YP+YG++ + GY TA H + ++ KG S HR +F Sbjct: 139 KVASIAAASLVAKVSRDGWMVKLSSLYPEYGWEKNKGYGTANHFESLRTKGLSPYHRKSF 198 >gi|302874784|ref|YP_003843417.1| Ribonuclease H [Clostridium cellulovorans 743B] gi|307690600|ref|ZP_07633046.1| ribonuclease HII [Clostridium cellulovorans 743B] gi|302577641|gb|ADL51653.1| Ribonuclease H [Clostridium cellulovorans 743B] Length = 261 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 85/196 (43%), Positives = 125/196 (63%), Gaps = 10/196 (5%) Query: 19 REKNMWPV-AGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKKREELY 72 R++ ++ + AG+DEVGRG LAGP+V AA++LD N+ GI DSKK+S KKREEL Sbjct: 67 RDQGVYAITAGVDEVGRGPLAGPIVAAAVVLDLYDLKDENLILGIKDSKKLSAKKREELD 126 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I A+ +I A + ID+ I + A++ L+V P + DG + + C Sbjct: 127 KLIKERAVSYAIGIADNNEIDEKGIAWCNNEVFKRAIKGLKVRPDLVISDGFPVS-GIEC 185 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + KGD++S+SIAAASIIAKV RD +M+ HKKYP+Y F+++VGY T +H + IK Sbjct: 186 ENKYYYKGDNLSISIAAASIIAKVFRDEIMQDYHKKYPNYNFEANVGYGTEEHVRAIKMF 245 Query: 192 GPSCIHRLTFRPLRNL 207 G + IHR++F L+N+ Sbjct: 246 GITPIHRMSF--LKNI 259 >gi|163785164|ref|ZP_02179855.1| RNase HII [Hydrogenivirga sp. 128-5-R1-1] gi|159879566|gb|EDP73379.1| RNase HII [Hydrogenivirga sp. 128-5-R1-1] Length = 190 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 84/193 (43%), Positives = 113/193 (58%), Gaps = 7/193 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREE 70 FE+E + +K + GIDE GRG LAGPVV AA+I P+NI F DSKK+S KKRE Sbjct: 2 FEIEKSLYQKGFKKIVGIDEAGRGPLAGPVVSAAVIF-PSNIDIFITKDSKKLSPKKREI 60 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+E+I A+ + I IDK NI+ AT A+ A+ L+ + D Sbjct: 61 LFEEIKKKALAVGIGVVDSCEIDKVNIYNATKLAMKRALFTLKSDFDYIITDYVKFD--- 117 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +V K D S+S+AAASIIAKV RD++M + YP + FD H GYPT H++ IK Sbjct: 118 PYPHISVKKADEKSISVAAASIIAKVYRDKIMEYFSEIYP-HSFDKHKGYPTKLHKEEIK 176 Query: 190 EKGPSCIHRLTFR 202 + G + IHR +F+ Sbjct: 177 KFGITPIHRKSFK 189 >gi|218530087|ref|YP_002420903.1| ribonuclease H [Methylobacterium chloromethanicum CM4] gi|218522390|gb|ACK82975.1| Ribonuclease H [Methylobacterium chloromethanicum CM4] Length = 216 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/180 (41%), Positives = 103/180 (57%), Gaps = 5/180 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYEKITSSAII 81 V G DEVGRGAL GPV+VAA+ DP P I +DSK++ RE L I + A + Sbjct: 25 VIGCDEVGRGALCGPVMVAAVWFDPVAFPPEILARLDDSKRLDRAAREALTPLIRAHARV 84 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S+++ S +D+ N+ ATLDA+ AV L + + L+DGR L AVI GD Sbjct: 85 SLAAGSRALVDRVNVRGATLDAMRRAVLGLG-LDATVLVDGRDPIPGLTQGCRAVIGGDR 143 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + IAAASI+AK RD +MR ++P Y ++ + GY TA H + +G S HRL+F Sbjct: 144 LVPQIAAASIVAKTFRDEIMRRLAPRHPAYAWERNAGYGTAAHLAGLTAQGRSQHHRLSF 203 >gi|254560918|ref|YP_003068013.1| RNAse HII [Methylobacterium extorquens DM4] gi|254268196|emb|CAX24115.1| RNAse HII [Methylobacterium extorquens DM4] Length = 216 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/180 (41%), Positives = 103/180 (57%), Gaps = 5/180 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYEKITSSAII 81 V G DEVGRGAL GPV+VAA+ DP P I +DSK++ RE L I + A + Sbjct: 25 VIGCDEVGRGALCGPVMVAAVWFDPVAFPPEILARLDDSKRLDRAAREALTPLIRAHARV 84 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S+++ S +D+ N+ ATLDA+ AV L + + L+DGR L AVI GD Sbjct: 85 SLAAGSRALVDRVNVRGATLDAMRRAVLGLG-LDATVLVDGRDPIPGLTQGCRAVIGGDR 143 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + IAAASI+AK RD +MR ++P Y ++ + GY TA H + +G S HRL+F Sbjct: 144 LVPQIAAASIVAKTFRDEIMRRLAPRHPAYAWERNAGYGTAAHLAGLTAQGRSPHHRLSF 203 >gi|162149133|ref|YP_001603594.1| ribonuclease HII [Gluconacetobacter diazotrophicus PAl 5] gi|189043600|sp|A9H3E2|RNH2_GLUDA RecName: Full=Ribonuclease HII; Short=RNase HII gi|161787710|emb|CAP57306.1| Ribonuclease HII [Gluconacetobacter diazotrophicus PAl 5] Length = 224 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 78/189 (41%), Positives = 112/189 (59%), Gaps = 6/189 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISHKKREELYEKITSS--AI 80 VAG+DEVGRG LAGPVV AA++ D P + ++DSKK++ R Y + ++ Sbjct: 14 VAGVDEVGRGPLAGPVVAAAVMFDSGVPRRLVTQLDDSKKLTEAARLRAYAALHAARGVH 73 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I++++AS I + NI +A A+ AV L P L+DG + P D C A V+ GD Sbjct: 74 IAVAAASVSEIARLNILRAAFLAMRRAVARLPHQPDMVLVDGNAAP-DFGCPAQCVVGGD 132 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 SLSIAAASI+AKV RDRLM ++P YG++ + GY TA+H+ + G + HR Sbjct: 133 GESLSIAAASIVAKVVRDRLMARLSCRWPGYGWERNAGYGTAEHRAALCRAGTTPHHREA 192 Query: 201 FRPLRNLSV 209 F +R L++ Sbjct: 193 FGLVRQLTL 201 >gi|312890316|ref|ZP_07749853.1| RNase HII [Mucilaginibacter paludis DSM 18603] gi|311297086|gb|EFQ74218.1| RNase HII [Mucilaginibacter paludis DSM 18603] Length = 198 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 70/177 (39%), Positives = 105/177 (59%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL P+ +NDSK+I + R EL +I A+ +++S Sbjct: 13 AGCDEAGRGCLAGPVFAAAVILPPDFEHGLLNDSKQIDEQTRYELRAEIEQKAVAFAVAS 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ++ ID+ NI A+ A++ A++ L + P +IDG + +I+GD S Sbjct: 73 VDNEEIDEINILNASFLAMHRAIDQLHIAPELLIIDGNRFNKYRAIPHHCIIQGDGKYFS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD M+ ++P+Y + ++ GYPT KH+ ++ E G + HR TFR Sbjct: 133 IAAASILAKTYRDDYMKKIALEHPEYDWHTNKGYPTIKHRNMVVELGYTPYHRRTFR 189 >gi|170760432|ref|YP_001787753.1| ribonuclease HII [Clostridium botulinum A3 str. Loch Maree] gi|189043583|sp|B1KWN1|RNH2_CLOBM RecName: Full=Ribonuclease HII; Short=RNase HII gi|169407421|gb|ACA55832.1| ribonuclease HII [Clostridium botulinum A3 str. Loch Maree] Length = 269 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 86/188 (45%), Positives = 119/188 (63%), Gaps = 6/188 (3%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEK 74 R N + +AG+DEVGRG LAGP+V AA++LD N F I DSKK+S KKREEL Sbjct: 78 RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREELDII 137 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI +I+ ++ ID+ I + + + AVE L+V P L DG ++ +L + Sbjct: 138 IREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAVK-NLNIRN 196 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGDS S+SIA++SIIAKV RD +M+ K+ YGF+ + GY T +H Q IK+ GP Sbjct: 197 EFIIKGDSKSISIASSSIIAKVYRDNMMKEYSKELNMYGFNHNAGYGTEEHVQAIKKYGP 256 Query: 194 SCIHRLTF 201 S IHR++F Sbjct: 257 SKIHRMSF 264 >gi|240138372|ref|YP_002962844.1| RNAse HII [Methylobacterium extorquens AM1] gi|240008341|gb|ACS39567.1| RNAse HII [Methylobacterium extorquens AM1] Length = 216 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/180 (41%), Positives = 103/180 (57%), Gaps = 5/180 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYEKITSSAII 81 V G DEVGRGAL GPV+VAA+ DP P I +DSK++ RE L I + A + Sbjct: 25 VIGCDEVGRGALCGPVMVAAVWFDPVAFPPEILARLDDSKRLDRAAREALTPLIRAHARV 84 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S+++ S +D+ N+ ATLDA+ AV L + + L+DGR L AVI GD Sbjct: 85 SLAAGSRALVDRVNVRGATLDAMRRAVLGLG-LDATVLVDGRDPIPGLTQGCRAVIGGDR 143 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + IAAASI+AK RD +MR ++P Y ++ + GY TA H + +G S HRL+F Sbjct: 144 LVPQIAAASIVAKTFRDEIMRRLAPRHPAYAWERNAGYGTAAHLAGLTAQGRSPHHRLSF 203 >gi|46203286|ref|ZP_00051740.2| COG0164: Ribonuclease HII [Magnetospirillum magnetotacticum MS-1] Length = 200 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 74/180 (41%), Positives = 105/180 (58%), Gaps = 5/180 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 V G DEVGRGAL+GPV+VAA+ DP P ++DSK++ R L I S A + Sbjct: 15 VIGCDEVGRGALSGPVMVAAVWFDPLAFPPELLARLDDSKRLDKATRTALTPLIRSHARV 74 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 +++++S + +D+ N+ ATLDA+ AV L + L+DGR L AVI GD Sbjct: 75 ALAASSRRLVDRINVRAATLDAMRRAVTRLG-LDAPVLVDGRDTIPGLTQTCRAVIGGDR 133 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + IAAASIIAK RD +MR ++P YG++ + GY TA H + +G S HR++F Sbjct: 134 LVPQIAAASIIAKTLRDDIMRRLAPRHPAYGWERNAGYGTAVHLAGLSAQGCSPHHRVSF 193 >gi|163851219|ref|YP_001639262.1| ribonuclease H [Methylobacterium extorquens PA1] gi|163662824|gb|ABY30191.1| Ribonuclease H [Methylobacterium extorquens PA1] Length = 216 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/180 (41%), Positives = 103/180 (57%), Gaps = 5/180 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYEKITSSAII 81 V G DEVGRGAL GPV+VAA+ DP P I +DSK++ RE L I + A + Sbjct: 25 VIGCDEVGRGALCGPVMVAAVWFDPVAFPPEILARLDDSKRLDRAAREALTPLIRAHARV 84 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S+++ S +D+ N+ ATLDA+ AV L + + L+DGR L AVI GD Sbjct: 85 SLAAGSRALVDRVNVRGATLDAMRRAVLGLG-LDATVLVDGRDPIPGLTQGCRAVIGGDR 143 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + IAAASI+AK RD +MR ++P Y ++ + GY TA H + +G S HRL+F Sbjct: 144 LVPQIAAASIVAKTFRDEIMRRLAPRHPAYAWERNAGYGTAAHLAGLTAQGRSPHHRLSF 203 >gi|163796461|ref|ZP_02190421.1| Ribonuclease HII [alpha proteobacterium BAL199] gi|159178311|gb|EDP62855.1| Ribonuclease HII [alpha proteobacterium BAL199] Length = 222 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 80/213 (37%), Positives = 117/213 (54%), Gaps = 10/213 (4%) Query: 2 FCNSIPE-RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFG 56 F SIP+ RP +LE V G+DEVGRG AGPVV A +LD P ++ Sbjct: 3 FMPSIPKTRPTDDLERAAGALEGALVIGVDEVGRGPWAGPVVAGAAVLDLVAMPTHVAAL 62 Query: 57 INDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI-- 114 I DSK +S +R + T A I++ A + ID NI +A+L A+ AV+ L Sbjct: 63 IADSKALSAPRRADALAAFTPYAAIALGRAEVEEIDAVNILQASLLAMRRAVDALLATLA 122 Query: 115 --PRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 P L+DG +P P + A++KGD+ LSI+ A+I AK+ RD M +++P YG Sbjct: 123 GPPALILVDGNRLPH-WPHPSRAIVKGDASCLSISVAAIAAKLARDAEMAALAEQHPGYG 181 Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 ++ + GY T +HQ ++ GP+ HR +F P+R Sbjct: 182 WERNAGYGTPEHQVALRRLGPTIHHRRSFAPVR 214 >gi|331269647|ref|YP_004396139.1| ribonuclease H [Clostridium botulinum BKT015925] gi|329126197|gb|AEB76142.1| ribonuclease H [Clostridium botulinum BKT015925] Length = 269 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 82/182 (45%), Positives = 105/182 (57%), Gaps = 7/182 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD---PNN--IPFGINDSKKISHKKREELYEKITSSAI 80 +AG DEVGRG LAGP+V AA+ILD NN + INDSKKI + REEL E I AI Sbjct: 81 LAGCDEVGRGPLAGPIVAAAVILDLEFANNDKLILKINDSKKIKPELREELAEIIKEKAI 140 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ + ID I + + +V L+V P L DG I F V+KG Sbjct: 141 AYCVAEIDNSEIDNKGIAWCNNEVLQRSVNGLKVKPDLVLSDGYKIKNCSIDNKF-VVKG 199 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D+ S SIA ASIIAKV RD+LM+ + Y DY FD ++GY T +H IK+ G + IHR Sbjct: 200 DAKSASIACASIIAKVYRDKLMQKYSEIYKDYAFDKNMGYGTKEHIDSIKKYGCTPIHRK 259 Query: 200 TF 201 +F Sbjct: 260 SF 261 >gi|51893167|ref|YP_075858.1| ribonuclease HII [Symbiobacterium thermophilum IAM 14863] gi|81388613|sp|Q67MS9|RNH22_SYMTH RecName: Full=Ribonuclease HII 2; Short=RNase HII 2 gi|51856856|dbj|BAD41014.1| ribonuclease HII [Symbiobacterium thermophilum IAM 14863] Length = 211 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 82/198 (41%), Positives = 114/198 (57%), Gaps = 18/198 (9%) Query: 20 EKNMW----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 E+ +W V G+DE GRG LAGPVV AA IL P+ G++DSK+++ K+RE + I Sbjct: 7 ERVLWRHGCQVIGVDEAGRGPLAGPVVAAACILPPDAALPGVDDSKRMTEKRREAAFAAI 66 Query: 76 TSSAI---ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP-----RSA----LIDGR 123 + A+ I I A+ ID+ NI +AT +A+ AVE + + R+A L+DG Sbjct: 67 QAVAVGWGIGIVDAAR--IDEINILQATFEAMAQAVEGARAMAAARPGRTAEAALLVDGN 124 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 P V+ GD SLSIAAASI+AKVTRDR+M YP+YGF + GY + + Sbjct: 125 RPLPLWPGWQRTVVGGDHKSLSIAAASILAKVTRDRMMIEYDAHYPEYGFARNKGYGSRE 184 Query: 184 HQQVIKEKGPSCIHRLTF 201 H ++ GP +HR TF Sbjct: 185 HWDALERYGPCPLHRRTF 202 >gi|225011416|ref|ZP_03701854.1| Ribonuclease H [Flavobacteria bacterium MS024-2A] gi|225003919|gb|EEG41891.1| Ribonuclease H [Flavobacteria bacterium MS024-2A] Length = 196 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 73/184 (39%), Positives = 112/184 (60%), Gaps = 11/184 (5%) Query: 27 AGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 AG DE GRG LAGPV AA+IL NN+P +NDSKK++ K+R L +I A+ +++ Sbjct: 12 AGTDEAGRGCLAGPVTAAAVILPKKNNLPL-LNDSKKLTEKQRYALRPEIEKQALAYAVA 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLP--CQAFAVIKGD 140 + ID+ NI A++ A++ A++ L +IP ++DG ED+P C V+KGD Sbjct: 71 HVYQEEIDEINILNASIKAMHLALKQLSLIPEFIVVDGNRFKQFEDIPHAC----VVKGD 126 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 +IAAAS++AK RD M+ ++P Y ++ + GYPT KH++ I G + HR++ Sbjct: 127 GKYQNIAAASVLAKTYRDDYMKKLDTEFPQYNWNKNKGYPTKKHREAIATFGITVHHRIS 186 Query: 201 FRPL 204 F+ L Sbjct: 187 FQLL 190 >gi|319441364|ref|ZP_07990520.1| ribonuclease HII [Corynebacterium variabile DSM 44702] Length = 227 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 79/200 (39%), Positives = 106/200 (53%), Gaps = 6/200 (3%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKK 62 S+PE LE V + + PVAG+DE GRGA GPV +AA IL P +P G+ DSKK Sbjct: 8 SMPE--GRTLEWAVHKAGLDPVAGVDEAGRGACCGPVTIAACILPPGPLPELDGLTDSKK 65 Query: 63 ISHKKREELYEKITSSAIISISS-ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 ++ KKR+ L++ I A+ Y+D I A L + AV L V P L D Sbjct: 66 LTAKKRDRLFDIIVDVAVDYAVVHVPASYVDDWGIQHANLGGMRRAVARLDVRPGYILTD 125 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 I + V+KGD I I+AAS++AKV+RDR+M +YP YG H GY T Sbjct: 126 AMKI-DGFTRPHLPVVKGDLICRCISAASVLAKVSRDRMMVDLDARYPGYGLAGHKGYGT 184 Query: 182 AKHQQVIKEKGPSCIHRLTF 201 A H + + G + HR T+ Sbjct: 185 AAHMESVCLLGGTPEHRYTY 204 >gi|319900379|ref|YP_004160107.1| RNase HII [Bacteroides helcogenes P 36-108] gi|319415410|gb|ADV42521.1| RNase HII [Bacteroides helcogenes P 36-108] Length = 201 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 76/181 (41%), Positives = 107/181 (59%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYLLREVIEKEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143 S + ID+ NI A+ A++ A++ L V P+ LIDG + DLP ++KGD Sbjct: 73 VSPEEIDRINILNASFLAMHRAIDGLSVHPQHLLIDGNRFKKYRDLPHTT--IVKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAASI+AK RD M H++YP Y ++ + GYPT KH+ I +G + HR+TF Sbjct: 131 LSIAAASILAKTYRDDYMNGLHEEYPYYDWNHNKGYPTKKHRAAIAVRGTTPYHRMTFNL 190 Query: 204 L 204 L Sbjct: 191 L 191 >gi|307297954|ref|ZP_07577758.1| Ribonuclease H [Thermotogales bacterium mesG1.Ag.4.2] gi|306916040|gb|EFN46423.1| Ribonuclease H [Thermotogales bacterium mesG1.Ag.4.2] Length = 241 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 77/183 (42%), Positives = 115/183 (62%), Gaps = 6/183 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAII-LDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 +AG+DE GRG LAGPVV AA+I L+P + G+ DSK + K RE L+ +I ++I+ I Sbjct: 32 IAGVDEAGRGPLAGPVVAAAVIVLNPVD---GVYDSKALCRKTRELLFGQILENSIVGIG 88 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S + +D N+ AT A+ A+ L P ++DG+S+ D+ + ++ GD S Sbjct: 89 LCSPEEVDILNVFAATRLAMNRALRILSRKPDYVIVDGKSLRLDISGEC--IVGGDRRSA 146 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IA+ASI+AKV RDR+M YP+YG+ +H GY T H + +++ GP+ HRLTFRP+ Sbjct: 147 AIASASIVAKVFRDRIMDSLDILYPEYGYRNHKGYCTDMHLRALRKYGPTTWHRLTFRPV 206 Query: 205 RNL 207 R L Sbjct: 207 REL 209 >gi|60679832|ref|YP_209976.1| ribonuclease HII [Bacteroides fragilis NCTC 9343] gi|253564368|ref|ZP_04841825.1| ribonuclease HII [Bacteroides sp. 3_2_5] gi|265764964|ref|ZP_06093239.1| ribonuclease HII [Bacteroides sp. 2_1_16] gi|81317095|sp|Q5LIL2|RNH2_BACFN RecName: Full=Ribonuclease HII; Short=RNase HII gi|60491266|emb|CAH06014.1| putative ribonuclease HII [Bacteroides fragilis NCTC 9343] gi|251948144|gb|EES88426.1| ribonuclease HII [Bacteroides sp. 3_2_5] gi|263254348|gb|EEZ25782.1| ribonuclease HII [Bacteroides sp. 2_1_16] gi|301161352|emb|CBW20892.1| putative ribonuclease HII [Bacteroides fragilis 638R] Length = 201 Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 78/181 (43%), Positives = 106/181 (58%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK++S K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFENELLNDSKQLSEKQRYALREVIERDAVAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143 S + IDK NI A+ A++ AV+ L+ P+ LIDG + D+P VIKGD Sbjct: 73 VSPEEIDKINILNASFLAMHRAVDRLKTRPQHLLIDGNRFKKYPDIPHTT--VIKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAASI+AK RD M H+++P Y ++ + GYPT KH+ I G + HR+TF Sbjct: 131 LSIAAASILAKTYRDDYMNKLHQEFPCYDWEHNKGYPTKKHRAAIAGHGTTPYHRMTFNL 190 Query: 204 L 204 L Sbjct: 191 L 191 >gi|15673275|ref|NP_267449.1| ribonuclease HII [Lactococcus lactis subsp. lactis Il1403] gi|13878721|sp|Q9CG17|RNH2_LACLA RecName: Full=Ribonuclease HII; Short=RNase HII gi|12724270|gb|AAK05391.1|AE006361_7 ribonuclease HII [Lactococcus lactis subsp. lactis Il1403] gi|326406831|gb|ADZ63902.1| ribonuclease HII [Lactococcus lactis subsp. lactis CV56] Length = 258 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 82/197 (41%), Positives = 117/197 (59%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E E + + + +AGIDEVGRG LAGPVV AA+IL N G+NDSKK+ K + Sbjct: 59 LEFEKELYGQEIQLIAGIDEVGRGPLAGPVVTAAVILPKNCKIRGLNDSKKVPKSKHHAI 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +I A+ I I + ID+ NI++AT A+ AV L V P LID + D P Sbjct: 119 LSEIQEKALAIGIGIVDAEKIDEVNIYEATKIAMIQAVSKLSVKPEHLLIDAMVL--DFP 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD+ S SIAAASI+AKVTRD +M+ ++P+Y F+ + GY TAKH + + + Sbjct: 177 IAQTKIIHGDARSASIAAASIVAKVTRDEMMKEFALEFPEYDFEHNAGYGTAKHLEALTK 236 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR ++ P++ + Sbjct: 237 YGITRIHRKSYEPIKTM 253 >gi|254821206|ref|ZP_05226207.1| ribonuclease HII [Mycobacterium intracellulare ATCC 13950] Length = 239 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 78/201 (38%), Positives = 113/201 (56%), Gaps = 10/201 (4%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE+ + + PVAG+DEVGRGA AGP+VVAA +L P + ++DSKK++ RE+L Sbjct: 20 LESALYRNGLGPVAGVDEVGRGACAGPLVVAACVLGPGRMESLAALDDSKKLTEAAREKL 79 Query: 72 YEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + I A ++ I A +D+ +H A ++ + AV L V P L DG +P Sbjct: 80 FPLIRRYALAYHVVFIPPAE---VDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP- 135 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L + VI GD+++ IAAAS++AKV+RDRLM +P YGF H GY T H Sbjct: 136 GLAVPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMEADHPGYGFALHKGYSTPAHSTA 195 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 + GP HR +F +R ++ Sbjct: 196 LARLGPCPEHRYSFINVRRVA 216 >gi|53711581|ref|YP_097573.1| ribonuclease HII [Bacteroides fragilis YCH46] gi|81383847|sp|Q64ZN7|RNH2_BACFR RecName: Full=Ribonuclease HII; Short=RNase HII gi|52214446|dbj|BAD47039.1| ribonuclease HII [Bacteroides fragilis YCH46] Length = 201 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 78/181 (43%), Positives = 106/181 (58%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK++S K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFENELLNDSKQLSEKQRYALREVIERDAVAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143 S + IDK NI A+ A++ AV+ L+ P+ LIDG + D+P VIKGD Sbjct: 73 VSPEEIDKINILNASFLAMHRAVDRLKTRPQHLLIDGNRFKKYPDIPHTT--VIKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAASI+AK RD M H+++P Y ++ + GYPT KH+ I G + HR+TF Sbjct: 131 LSIAAASILAKTYRDDYMNRLHQEFPCYDWEHNKGYPTKKHRAAIAGHGTTPYHRMTFNL 190 Query: 204 L 204 L Sbjct: 191 L 191 >gi|325266705|ref|ZP_08133381.1| ribonuclease HII [Kingella denitrificans ATCC 33394] gi|324981814|gb|EGC17450.1| ribonuclease HII [Kingella denitrificans ATCC 33394] Length = 202 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 105/180 (58%), Gaps = 1/180 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS-SAIISISS 85 AG+DE GRG L G V AA+IL + G+ DSKK+S KKR+EL +I + +A I+ Sbjct: 13 AGVDEAGRGCLVGSVFAAAVILPAHFDLRGLTDSKKLSEKKRDELAVQIKAQAAAYCIAR 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A I + NI AT+ A+ AV+ L+ P IDG +P DL A V+KGD+ + Sbjct: 73 ADVGEIAQLNILHATMLAMKRAVQGLEKQPAKVWIDGNRMPPDLGVPAECVVKGDAKIAA 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AKV RD M H++YP YGF H GY TA H + + G HR F P++ Sbjct: 133 ISAASVLAKVARDAEMYALHERYPQYGFAQHKGYGTAAHLAALAQFGALPEHRADFAPVK 192 >gi|111225146|ref|YP_715940.1| ribonuclease HII [Frankia alni ACN14a] gi|123043979|sp|Q0RDP7|RNH2_FRAAA RecName: Full=Ribonuclease HII; Short=RNase HII gi|111152678|emb|CAJ64419.1| Endoribonuclease H. RNase H (RnhB) [Frankia alni ACN14a] Length = 241 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 75/197 (38%), Positives = 112/197 (56%), Gaps = 11/197 (5%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN---IPFGINDSKKISHKKR 68 F E + + PVAG+DE GRGA AGP+VVAA++L P+ + + DSK ++ + R Sbjct: 15 FGYERALVRCGLGPVAGVDEAGRGACAGPLVVAAVVLGPDGRRRLSPRLADSKLLTEQVR 74 Query: 69 EELYEKITSSAI----ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 E L++++ +A + I +A ID+ +H A + + AV L P L DG + Sbjct: 75 EGLFDEVLRAAADWSAVVIPAAE---IDRTGVHVANITGMRRAVARLGHRPGYVLTDGFA 131 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + ++ AV+KGD ++ IAAASI+AKVTRDR+MR H +Y +Y F H GY TA H Sbjct: 132 VA-GFGTESLAVVKGDRVAACIAAASIVAKVTRDRIMRALHTRYAEYDFAQHKGYVTAAH 190 Query: 185 QQVIKEKGPSCIHRLTF 201 + GP HR ++ Sbjct: 191 AAALARYGPCDEHRKSY 207 >gi|291278613|ref|YP_003495448.1| ribonuclease HII [Deferribacter desulfuricans SSM1] gi|290753315|dbj|BAI79692.1| ribonuclease HII [Deferribacter desulfuricans SSM1] Length = 187 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 77/175 (44%), Positives = 106/175 (60%), Gaps = 1/175 (0%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSA 86 G+DEVGRG AGP+VV+A+IL P+ I DSKKIS K+RE+L + I A+ S++ Sbjct: 8 GLDEVGRGCFAGPLVVSAVILPPDFKDERIIDSKKISEKQREKLAQYIKDIALDYSVAVV 67 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSI 146 ++ IDK NI +AT A++ A+ L ID + C+ V KG+S +I Sbjct: 68 CNKVIDKINILQATKQAMHIAISRLNNQYSFIAIDAVKLKNFYGCKINPVNKGESKFQNI 127 Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 AAASIIAKV RD LM+ H KYP+Y + + GY T +H + IK+ G +HR TF Sbjct: 128 AAASIIAKVYRDNLMKKLHLKYPEYNWYKNKGYGTKEHIEAIKKYGICELHRKTF 182 >gi|169827106|ref|YP_001697264.1| ribonuclease HII [Lysinibacillus sphaericus C3-41] gi|168991594|gb|ACA39134.1| Ribonuclease HII [Lysinibacillus sphaericus C3-41] Length = 253 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 80/184 (43%), Positives = 114/184 (61%), Gaps = 4/184 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DE GRG LAGPVV AA+IL N+ G+NDSK++S KR I AI I Sbjct: 70 IAGVDEAGRGPLAGPVVTAAVILPTNSEALVGLNDSKQLSKDKRNAFAALIKKHAISYFI 129 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 S Q ID+ NI++AT ++ +VE+L P L+D ++P +P + +IKGD+ S Sbjct: 130 HFQSAQQIDELNIYEATKQSMKASVESLSRKPDYVLVDAMTLPMAIPQDS--IIKGDAKS 187 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 L+IAAASI+AK RD M K +P YGF H GY T +H + ++E GP+ HR +F P Sbjct: 188 LAIAAASILAKTARDDYMEQLDKDFPMYGFAQHAGYGTKQHLKALEEYGPTIHHRKSFEP 247 Query: 204 LRNL 207 ++++ Sbjct: 248 IKSM 251 >gi|67920299|ref|ZP_00513819.1| Ribonuclease H [Crocosphaera watsonii WH 8501] gi|67857783|gb|EAM53022.1| Ribonuclease H [Crocosphaera watsonii WH 8501] Length = 196 Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 76/182 (41%), Positives = 107/182 (58%), Gaps = 5/182 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI- 80 +AG+DEVGRG L GPVV AA++ + I G+ DSK++S K+RE L +I + AI Sbjct: 13 IAGVDEVGRGCLFGPVVAAAVVFEKAAISQLPEIGVKDSKQLSAKRREILATEIKNRAIS 72 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 IS AS + ID+ NI A+L A+ +V L V P L+DG ++ +I GD Sbjct: 73 YYISYASAREIDRLNILNASLLAMQRSVTKLSVTPELCLVDGNKKIPNITIPQETIIGGD 132 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S IAAASI+AKV RD+L+ KYP Y +++ GY T KH+ ++E P HR + Sbjct: 133 RTSPIIAAASILAKVWRDKLIIRLATKYPHYDLENNKGYGTKKHRLALQEYAPCFHHRHS 192 Query: 201 FR 202 F+ Sbjct: 193 FK 194 >gi|145218837|ref|YP_001129546.1| ribonuclease H [Prosthecochloris vibrioformis DSM 265] gi|189043641|sp|A4SC35|RNH2_PROVI RecName: Full=Ribonuclease HII; Short=RNase HII gi|145205001|gb|ABP36044.1| RNase HII [Chlorobium phaeovibrioides DSM 265] Length = 205 Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 79/196 (40%), Positives = 107/196 (54%), Gaps = 10/196 (5%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAI----ILDPNNIPFG-INDSKKISHKKREE 70 E+ +W + GIDE GRG LAGPVV AA+ P G +NDSKK+S R E Sbjct: 6 EEQLWNSMERICGIDEAGRGPLAGPVVAAAVVFPRWFRPGKGILGRMNDSKKLSPSLRRE 65 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 + I +A+ S+S Q ID+ NI AT+ A+ AV L + P L+DG + Sbjct: 66 MAPAIQDAALAWSVSVVDAQTIDRINILSATMLAMNRAVGGLGLTPDMLLVDGNRFSPET 125 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P ++ GD+ SIAAAS++AK RD +M + YP+YGF H GYPTA H I+ Sbjct: 126 PVAYRTLVGGDAYIYSIAAASVLAKTARDAIMSSYDRDYPEYGFARHAGYPTAMHISAIR 185 Query: 190 EKGPSCIHRLTFRPLR 205 + G IHR +F+ R Sbjct: 186 QHGRCPIHRFSFKVRR 201 >gi|212703538|ref|ZP_03311666.1| hypothetical protein DESPIG_01583 [Desulfovibrio piger ATCC 29098] gi|212673038|gb|EEB33521.1| hypothetical protein DESPIG_01583 [Desulfovibrio piger ATCC 29098] Length = 211 Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 82/195 (42%), Positives = 111/195 (56%), Gaps = 20/195 (10%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AGIDE GRG LAGPVV AA+IL + ++P G+ DSK +S +RE L I A+ + Sbjct: 1 MAGIDEAGRGCLAGPVVAAAVILPEAYDLP-GLTDSKALSAAQREHLAPLIRQCALAWGL 59 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPE--------------- 127 ID+ NI +AT +A+ AV +L+ P L+DG +++PE Sbjct: 60 GVVWPATIDRINILQATFEAMSRAVASLKRRPNLLLVDGNKTVPEPVLLPHWRKRHADAT 119 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 DLP Q AV+ GDS +I+AAS++AK RD LM + +P YGF H GY TA H + Sbjct: 120 DLPRQN-AVVGGDSSVPAISAASVLAKTYRDMLMEHLDRHHPGYGFARHKGYGTADHYEA 178 Query: 188 IKEKGPSCIHRLTFR 202 + GP HRLTFR Sbjct: 179 LHRLGPCRQHRLTFR 193 >gi|153940580|ref|YP_001391739.1| ribonuclease HII [Clostridium botulinum F str. Langeland] gi|170755844|ref|YP_001781984.1| ribonuclease HII [Clostridium botulinum B1 str. Okra] gi|189043581|sp|B1II72|RNH2_CLOBK RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043582|sp|A7GG29|RNH2_CLOBL RecName: Full=Ribonuclease HII; Short=RNase HII gi|152936476|gb|ABS41974.1| ribonuclease HII [Clostridium botulinum F str. Langeland] gi|169121056|gb|ACA44892.1| ribonuclease HII [Clostridium botulinum B1 str. Okra] gi|295319764|gb|ADG00142.1| ribonuclease HII [Clostridium botulinum F str. 230613] Length = 269 Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 86/188 (45%), Positives = 119/188 (63%), Gaps = 6/188 (3%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEK 74 R N + +AG+DEVGRG LAGP+V AA++LD N F I DSKK+S KKREEL Sbjct: 78 RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREELDII 137 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI +I+ ++ ID+ I + + + AVE L+V P L DG ++ ++L + Sbjct: 138 IREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAV-KNLNIRN 196 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGDS S+SIA++SIIAKV RD +M+ K YGF+ + GY T +H Q IK+ GP Sbjct: 197 EFIIKGDSKSISIASSSIIAKVYRDNMMKEYSKGLNMYGFNHNAGYGTEEHVQAIKKYGP 256 Query: 194 SCIHRLTF 201 S IHR++F Sbjct: 257 SKIHRMSF 264 >gi|253682672|ref|ZP_04863469.1| ribonuclease HII (RNase HII) [Clostridium botulinum D str. 1873] gi|253562384|gb|EES91836.1| ribonuclease HII (RNase HII) [Clostridium botulinum D str. 1873] Length = 269 Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 83/182 (45%), Positives = 106/182 (58%), Gaps = 7/182 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD---PNN--IPFGINDSKKISHKKREELYEKITSSAI 80 +AG DEVGRG LAGP+V AA+ILD NN + INDSKKI + REEL E I AI Sbjct: 81 LAGCDEVGRGPLAGPIVAAAVILDLEFANNDKLILKINDSKKIKPELREELAEIIKEKAI 140 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 I+ + ID I + + +V L+V P AL DG I F V+KG Sbjct: 141 SYCIAEIDNLEIDNKGIAWCNNEVLQRSVNGLRVKPNLALSDGYKIKNCSIDNKF-VVKG 199 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D+ S SIA ASIIAKV RD+LM+ + Y +Y FD ++GY T +H IK+ G + IHR Sbjct: 200 DAKSASIACASIIAKVHRDKLMQKYSEIYKEYAFDKNMGYGTKEHIDSIKKYGYTPIHRK 259 Query: 200 TF 201 +F Sbjct: 260 SF 261 >gi|226949794|ref|YP_002804885.1| ribonuclease HII [Clostridium botulinum A2 str. Kyoto] gi|226842944|gb|ACO85610.1| ribonuclease HII [Clostridium botulinum A2 str. Kyoto] gi|322806706|emb|CBZ04275.1| ribonuclease HII [Clostridium botulinum H04402 065] Length = 269 Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 86/188 (45%), Positives = 118/188 (62%), Gaps = 6/188 (3%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEK 74 R N + +AG+DEVGRG LAGP+V AA++LD N F I DSKK+S KKREEL Sbjct: 78 RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREELDII 137 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI +I+ ++ ID+ I + + + AVE L+V P L DG ++ +L + Sbjct: 138 IREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAVK-NLNIRN 196 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGDS S+SIA++SIIAKV RD +M+ K YGF+ + GY T +H Q IK+ GP Sbjct: 197 EFIIKGDSKSISIASSSIIAKVYRDNMMKEYSKGLNMYGFNHNAGYGTEEHVQAIKKHGP 256 Query: 194 SCIHRLTF 201 S IHR++F Sbjct: 257 SKIHRMSF 264 >gi|154491927|ref|ZP_02031553.1| hypothetical protein PARMER_01557 [Parabacteroides merdae ATCC 43184] gi|154088168|gb|EDN87213.1| hypothetical protein PARMER_01557 [Parabacteroides merdae ATCC 43184] Length = 199 Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 103/179 (57%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL P+ +NDSK++S KKR L I AI ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPPDFHNEDLNDSKQLSEKKRYALRPIIEREAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI KA+ A++ A++ L+V P LIDG + V+KGD LS Sbjct: 73 VTPEEIDRINILKASFLAMHRAIDQLKVKPEHLLIDGNRFTPYPGLKHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M ++YP Y + + GYPT H++ I+E G + HR TF L Sbjct: 133 IAAASILAKTYRDDYMDSLDREYPAYHWKENKGYPTKAHREAIRECGITPYHRKTFTLL 191 >gi|168184647|ref|ZP_02619311.1| ribonuclease HII [Clostridium botulinum Bf] gi|237795877|ref|YP_002863429.1| ribonuclease HII [Clostridium botulinum Ba4 str. 657] gi|182672292|gb|EDT84253.1| ribonuclease HII [Clostridium botulinum Bf] gi|229260950|gb|ACQ51983.1| ribonuclease HII [Clostridium botulinum Ba4 str. 657] Length = 269 Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 86/188 (45%), Positives = 118/188 (62%), Gaps = 6/188 (3%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEK 74 R N + +AG+DEVGRG LAGP+V AA++LD N F I DSKK+S KKREEL Sbjct: 78 RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREELDII 137 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI +I+ ++ ID+ I + + + AVE L+V P L DG ++ +L + Sbjct: 138 IREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAVK-NLNIRN 196 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGDS S+SIA++SIIAKV RD +M+ K YGF+ + GY T +H Q IK+ GP Sbjct: 197 EFIIKGDSKSISIASSSIIAKVYRDNMMKEYSKGLNMYGFNHNAGYGTEEHVQAIKKYGP 256 Query: 194 SCIHRLTF 201 S IHR++F Sbjct: 257 SKIHRMSF 264 >gi|298207692|ref|YP_003715871.1| putative ribonuclease HII [Croceibacter atlanticus HTCC2559] gi|83850329|gb|EAP88197.1| putative ribonuclease HII [Croceibacter atlanticus HTCC2559] Length = 199 Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 76/183 (41%), Positives = 109/183 (59%), Gaps = 9/183 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 G DE GRG LAGPV AA+IL D NN P +NDSKK++HK+R+ L I + A+ S+ Sbjct: 13 CGTDEAGRGCLAGPVTAAAVILPQDFNN-PV-LNDSKKLTHKQRDLLRPIIETEAVSFSV 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDS 141 IDK NI A++ + ++ +LQ P +DG +D+P + +IKGD Sbjct: 71 IHIDIDTIDKINILNASILGMQESIRSLQTKPEHIAVDGNRFKPCDDIPYKC--IIKGDG 128 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 L+IA+ASI+AK RD M H+++P Y + + GYPT +H++ I+ GPS HR +F Sbjct: 129 KYLNIASASILAKTYRDNYMEKIHEEFPMYNWKQNKGYPTKEHREAIRTHGPSKYHRKSF 188 Query: 202 RPL 204 R L Sbjct: 189 RLL 191 >gi|298707143|emb|CBJ29916.1| conserved unknown protein [Ectocarpus siliculosus] Length = 350 Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 115/211 (54%), Gaps = 33/211 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS-HKKREELYEKITSS--AIIS 82 V G+DE GRG AGPVV AA ++ P+ GI DSKKI+ H RE L++++T + + + Sbjct: 132 VIGVDEAGRGPFAGPVVAAACMIPPDVNILGIQDSKKITQHSDRETLFKELTETPGVVWA 191 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA-----------------------L 119 S ID+ NI +AT +A+ + V L+V +S L Sbjct: 192 ASEVGSSRIDEINILEATKEAMTNCV--LEVCSKSVEASANKSTNTKKKKNTSDKKPFVL 249 Query: 120 IDGRSIP---EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 +DG P D +A V+ GD + IAAASIIAKVTRDRLM +++P +GF+ H Sbjct: 250 VDGNFTPPGLGDAKVEAECVVGGDGLEYCIAAASIIAKVTRDRLMIEFGERWPVFGFERH 309 Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 GY TA H+ I+E G IHR +F L+N+ Sbjct: 310 KGYGTAAHRDAIREHGMVEIHRRSF--LKNM 338 >gi|153934073|ref|YP_001384616.1| ribonuclease HII [Clostridium botulinum A str. ATCC 19397] gi|153935357|ref|YP_001388133.1| ribonuclease HII [Clostridium botulinum A str. Hall] gi|189043578|sp|A7FW05|RNH2_CLOB1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|152930117|gb|ABS35617.1| ribonuclease HII [Clostridium botulinum A str. ATCC 19397] gi|152931271|gb|ABS36770.1| ribonuclease HII [Clostridium botulinum A str. Hall] Length = 269 Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 86/188 (45%), Positives = 118/188 (62%), Gaps = 6/188 (3%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEK 74 R N + +AG+DEVGRG LAGP+V AA++LD N F I DSKK+S KKREEL Sbjct: 78 RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRVFNIKDSKKLSEKKREELDII 137 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI +I+ ++ ID+ I + + + AVE L+V P L DG ++ +L + Sbjct: 138 IREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAVK-NLNIRN 196 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGDS S+SIA++SIIAKV RD +M+ K YGF+ + GY T +H Q IK+ GP Sbjct: 197 EFIIKGDSKSISIASSSIIAKVYRDSMMKEYSKGLNMYGFNHNAGYGTEEHVQAIKKHGP 256 Query: 194 SCIHRLTF 201 S IHR++F Sbjct: 257 SKIHRMSF 264 >gi|72162544|ref|YP_290201.1| ribonuclease HII [Thermobifida fusca YX] gi|97189430|sp|Q47MZ1|RNH2_THEFY RecName: Full=Ribonuclease HII; Short=RNase HII gi|71916276|gb|AAZ56178.1| ribonuclease H [Thermobifida fusca YX] Length = 231 Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 72/199 (36%), Positives = 112/199 (56%), Gaps = 1/199 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P +++E + VAG+DEVGRGA AGPV+V A I D + P G+ DSK+++ ++R Sbjct: 11 PTYDVEQELIAAGARVVAGLDEVGRGAWAGPVLVCAAITDGSPPPEGLTDSKRLTPRRRT 70 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + E++ S + AS ID+ + +A A + A++ L V P + ++DG+ Sbjct: 71 AMAEQVRSWVRGYAFGQASPAEIDRLGMTEALRLAAHRALDALPVRPDAVIVDGKHDYVG 130 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 P +K D +S+AAAS++AKV RD LM +YP YGF + GYP+ H+ + Sbjct: 131 APWTVRTHVKADLTCVSVAAASVLAKVHRDALMAELDAEYPGYGFATGAGYPSPVHRAAL 190 Query: 189 KEKGPSCIHRLTFRPLRNL 207 E GP+ HRL++ L L Sbjct: 191 AEHGPTPHHRLSWSYLDRL 209 >gi|328752252|gb|EGF65868.1| ribonuclease HII [Propionibacterium acnes HL020PA1] Length = 204 Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 77/189 (40%), Positives = 102/189 (53%), Gaps = 6/189 (3%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSA 79 + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L+ I A Sbjct: 11 GLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALFNVIMDKA 70 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED-LPCQAFAVI 137 + +S D+ + +A + + AV L V P L DG P D L + Sbjct: 71 LAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDG--FPVDGLTVPDLGMW 128 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA Q+ +KE GPS H Sbjct: 129 KGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALQQRRLKELGPSRQH 188 Query: 198 RLTFRPLRN 206 R+++ +R Sbjct: 189 RMSYANVRR 197 >gi|225009987|ref|ZP_03700459.1| Ribonuclease H [Flavobacteria bacterium MS024-3C] gi|225005466|gb|EEG43416.1| Ribonuclease H [Flavobacteria bacterium MS024-3C] Length = 193 Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 71/183 (38%), Positives = 107/183 (58%), Gaps = 1/183 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG DE GRG L+GPV AA+IL N ++DSKK+S K+R L I A+ +S Sbjct: 11 IAGTDEAGRGCLSGPVTAAAVILPKNFYHPMLDDSKKLSAKQRAILAPIIKQEAVSYGVS 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 ID+ NI +A++ A++ ++ L+ IP ++DG L V+KGD Sbjct: 71 HVFPHVIDRINILQASILAMHKSIAKLKTIPEKIIVDGNKFNPYLSIPHETVVKGDGKFY 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAAS++AK RD M H+K+P Y ++ ++GYPTAKH+ I G + HR TF+ + Sbjct: 131 AIAAASVLAKTARDEYMMELHQKFPLYQWNKNMGYPTAKHRNAIATYGITPHHRKTFKGV 190 Query: 205 RNL 207 ++L Sbjct: 191 KDL 193 >gi|313204705|ref|YP_004043362.1| RNAse hii [Paludibacter propionicigenes WB4] gi|312444021|gb|ADQ80377.1| RNase HII [Paludibacter propionicigenes WB4] Length = 220 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 72/181 (39%), Positives = 110/181 (60%), Gaps = 7/181 (3%) Query: 28 GIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAII-SISS 85 G DE GRG LAGPVV AA+IL + + P +NDSK++S ++R+ L I A+ ++ Sbjct: 15 GCDEAGRGCLAGPVVAAAVILPADFDCPL-LNDSKQLSEQERDTLRPIIEQQALAWGVAL 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143 ID+ NI A++ A++ A++ L + P ++DG D+P Q ++KGDS Sbjct: 74 VDSGEIDEINILNASILAMHRAIDKLNIRPEFIIVDGNKFKSYADIPYQT--IVKGDSKY 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAAS++AK RD +M+ H +YP Y +D + YPT KH+ I++ G + HRL++ Sbjct: 132 LSIAAASVLAKTHRDEMMQQLHAEYPHYDWDKNKAYPTVKHRNAIRKFGTTPYHRLSYDL 191 Query: 204 L 204 L Sbjct: 192 L 192 >gi|169824229|ref|YP_001691840.1| ribonuclease HII [Finegoldia magna ATCC 29328] gi|167831034|dbj|BAG07950.1| ribonuclease HII [Finegoldia magna ATCC 29328] Length = 207 Score = 124 bits (310), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 80/190 (42%), Positives = 109/190 (57%), Gaps = 12/190 (6%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + GIDEVGRG LAGPVV AII+ N I G+ DSKK+S KKR + + I + A+ S+ Sbjct: 14 ICGIDEVGRGPLAGPVVTCAIIMPKNCEIIEGVTDSKKLSEKKRIKFKDMILNQALAYSV 73 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALIDGRSIPEDLPCQAFAVI 137 + ID+ NI +AT ++ AVE+L+ + P +ID I D+ +F + Sbjct: 74 NFVDQGVIDEINIKQATRLSMKRAVESLKTKDNKFIKPDLIVIDAEEIDTDIKQMSF--V 131 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD I+ ASI+AKV RD M+ YP YGF+ H GY T H+++I E G +H Sbjct: 132 KGDEKLYPISCASIVAKVIRDEYMKEMAVIYPQYGFEKHKGYGTKLHREMILEHGECPLH 191 Query: 198 RLTFRPLRNL 207 R TF LR L Sbjct: 192 RKTF--LRKL 199 >gi|221633032|ref|YP_002522257.1| ribonuclease HII [Thermomicrobium roseum DSM 5159] gi|221155904|gb|ACM05031.1| ribonuclease HII [Thermomicrobium roseum DSM 5159] Length = 219 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/197 (42%), Positives = 120/197 (60%), Gaps = 5/197 (2%) Query: 8 ERPHFELE-AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISH 65 ERP FELE A+ + N W VAG+DEVGRGALAGPVV AA I +P+ +P + DSK+++ Sbjct: 16 ERPTFELEQALWQAGNRW-VAGVDEVGRGALAGPVVAAACIFEPSTELPDQLRDSKRLTD 74 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 +R L + + ++ +I +ASH+ +D+ I +AT A+ A++ L + L DG Sbjct: 75 PQRRALADWVRQYSLRWAIGAASHREVDRLGIVRATALAMLRALQRLGPVD-HVLYDGLP 133 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + E AV+ GD SIAAASI+AKV RD LM +YP YG++ + GY T H Sbjct: 134 LTEFERLPGTAVVHGDMRCASIAAASILAKVIRDDLMARLAVRYPGYGWEENAGYGTPSH 193 Query: 185 QQVIKEKGPSCIHRLTF 201 ++ I+E G + HR +F Sbjct: 194 RRAIRELGSTPFHRRSF 210 >gi|148380399|ref|YP_001254940.1| ribonuclease HII [Clostridium botulinum A str. ATCC 3502] gi|168180678|ref|ZP_02615342.1| ribonuclease HII [Clostridium botulinum NCTC 2916] gi|189043580|sp|A5I4L9|RNH2_CLOBH RecName: Full=Ribonuclease HII; Short=RNase HII gi|148289883|emb|CAL83991.1| putative ribonuclease HII [Clostridium botulinum A str. ATCC 3502] gi|182668376|gb|EDT80355.1| ribonuclease HII [Clostridium botulinum NCTC 2916] Length = 269 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/188 (45%), Positives = 118/188 (62%), Gaps = 6/188 (3%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEK 74 R N + +AG+DEVGRG LAGP+V AA++LD N F I DSKK+S KKREEL Sbjct: 78 RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREELDII 137 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI +I+ ++ ID+ I + + + AVE L+V P L DG ++ +L + Sbjct: 138 IREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAVK-NLNIRN 196 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGDS S+SIA++SIIAKV RD +M+ K YGF+ + GY T +H Q IK+ GP Sbjct: 197 EFIIKGDSKSISIASSSIIAKVYRDSMMKEYSKGLNMYGFNHNAGYGTEEHVQAIKKHGP 256 Query: 194 SCIHRLTF 201 S IHR++F Sbjct: 257 SKIHRMSF 264 >gi|319760422|ref|YP_004124360.1| ribonuclease HII [Candidatus Blochmannia vafer str. BVAF] gi|318039136|gb|ADV33686.1| ribonuclease HII [Candidatus Blochmannia vafer str. BVAF] Length = 208 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/190 (44%), Positives = 114/190 (60%), Gaps = 10/190 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN-----DSKKISHKKREELYEKITSSAI 80 +AG+DEVG GAL GP++ +A+I P N IN DSK ++ KKR +LY+ I ++ Sbjct: 17 IAGVDEVGCGALMGPIIASAVIFPPFNNQKKINVAGLVDSKTLNSKKRVKLYKDIQKYSL 76 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVI 137 SI S IDK N+ KA L A+ AV NL +IP L+DG P +++ Q F I Sbjct: 77 SWSIGVVSVSEIDKLNVLKARLLAMKRAVLNLSIIPDLILVDGNKAPFFKNIFYQCF--I 134 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD I+AASIIAKV RDR M I + +YP YG + + GYPT H Q + GP+ H Sbjct: 135 KGDVYIPIISAASIIAKVIRDRAMIILNTQYPQYGLNHNKGYPTNFHIQQLYFYGPTIYH 194 Query: 198 RLTFRPLRNL 207 R TF P++++ Sbjct: 195 RKTFSPVKHM 204 >gi|269469003|gb|EEZ80571.1| Ribonuclease HII [uncultured SUP05 cluster bacterium] Length = 171 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/172 (44%), Positives = 102/172 (59%), Gaps = 7/172 (4%) Query: 39 GPVVVAAIILDPN--NIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNI 96 G V+ A+IL PN N+P + DSKK+S KKRE LY IT ++ A+ Q +D+ NI Sbjct: 2 GSVIAGAVIL-PNDFNLP-ELTDSKKLSEKKREILYTLITQQCQWAVGEANTQEVDEINI 59 Query: 97 HKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVT 156 +AT+ A+ AVENL L+DG P+ C A +IKGD I+AASIIAKVT Sbjct: 60 LQATMLAMRRAVENLNSQYDQVLVDGNRCPKLKNCTA--IIKGDLTEPVISAASIIAKVT 117 Query: 157 RDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHRLTFRPLRNL 207 RDR M + +YP+YGF H GY T H Q +++ G HR +F P+R L Sbjct: 118 RDRQMILLDAQYPEYGFAQHKGYGTRVHLQALEKFGAIKGQHRYSFAPVRKL 169 >gi|330997790|ref|ZP_08321625.1| ribonuclease HII [Paraprevotella xylaniphila YIT 11841] gi|329569678|gb|EGG51443.1| ribonuclease HII [Paraprevotella xylaniphila YIT 11841] Length = 207 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/181 (40%), Positives = 107/181 (59%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG LAG V AA+IL + +NDSK++S KKR L +I A+ ++ Sbjct: 13 AGLDEAGRGCLAGAVYAAAVILPKDYRNEMLNDSKQLSEKKRYLLRGQIERDALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143 + Q ID+ NI A+ A++ A++ L V P + L+DG DLP V+KGD Sbjct: 73 VTPQEIDEINILNASFLAMHRALDQLAVRPEALLVDGNRFKPYRDLPHTT--VVKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +SIAAASI+AK RD M H++YP Y +DS+ GYP H++ I+ G + HR+++ Sbjct: 131 MSIAAASILAKTYRDDYMLRLHEEYPVYHWDSNKGYPAKAHREAIRRHGVTPYHRMSYNL 190 Query: 204 L 204 L Sbjct: 191 L 191 >gi|68171965|ref|ZP_00545273.1| Ribonuclease H [Ehrlichia chaffeensis str. Sapulpa] gi|67998612|gb|EAM85357.1| Ribonuclease H [Ehrlichia chaffeensis str. Sapulpa] Length = 209 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/193 (43%), Positives = 117/193 (60%), Gaps = 4/193 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREE 70 E+ ++ K+ + G+DEVG G+LAGPVV AA+ N+I + I DSKK++ KKR E Sbjct: 9 EISKLINNKHC-TIVGVDEVGYGSLAGPVVSAAVFFPKHDNHITYNIQDSKKLTPKKRLE 67 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +Y IT SI A ID++NI AT A+ A+ L ++DG +PE LP Sbjct: 68 IYNIITPMVKWSIGLAEVHEIDQYNILNATHIAMQRALRGLNSNINYVIVDGNKVPE-LP 126 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A AV+ GD+IS+SIAAASIIAKVTRD+LM H ++P Y ++ + GY T H + + + Sbjct: 127 WNAKAVVDGDNISISIAAASIIAKVTRDKLMETLHIQFPQYNWNKNKGYGTKHHLESLHK 186 Query: 191 KGPSCIHRLTFRP 203 G + HR TF P Sbjct: 187 YGKTIHHRNTFAP 199 >gi|227488611|ref|ZP_03918927.1| ribonuclease HII [Corynebacterium glucuronolyticum ATCC 51867] gi|227543214|ref|ZP_03973263.1| ribonuclease HII [Corynebacterium glucuronolyticum ATCC 51866] gi|227091505|gb|EEI26817.1| ribonuclease HII [Corynebacterium glucuronolyticum ATCC 51867] gi|227181023|gb|EEI61995.1| ribonuclease HII [Corynebacterium glucuronolyticum ATCC 51866] Length = 208 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/195 (38%), Positives = 106/195 (54%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREELY 72 E + + + PVAG+DE GRGA AGP+ +AA IL IP ++DSKK++ +R L+ Sbjct: 5 EVALAKAGLGPVAGVDEAGRGACAGPITIAACILPDQFIPELELLDDSKKLTPARRAHLF 64 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I AI I S ID+ I A + + AV L V P L D +P Sbjct: 65 PLIKRHAIAWHIVHISAHDIDERGITDANISGMRRAVGGLAVRPGYVLTDAWWVP-GFAQ 123 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + VI GD+ + IAAAS++AK +RD++M +YP YGF H GY TAKH ++ Sbjct: 124 PSLPVIGGDATARCIAAASVLAKYSRDQIMIDYDAQYPGYGFAGHKGYGTAKHMDAVRHH 183 Query: 192 GPSCIHRLTFRPLRN 206 G S IHR ++ +RN Sbjct: 184 GASPIHRYSYSNVRN 198 >gi|303234893|ref|ZP_07321518.1| ribonuclease HII [Finegoldia magna BVS033A4] gi|302494011|gb|EFL53792.1| ribonuclease HII [Finegoldia magna BVS033A4] Length = 207 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/190 (42%), Positives = 109/190 (57%), Gaps = 12/190 (6%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + GIDEVGRG LAGPVV AII+ N I G+ DSKK+S KKR + + I + A+ S+ Sbjct: 14 ICGIDEVGRGPLAGPVVTCAIIMPKNCEIIDGVTDSKKLSEKKRIKFKDMILNQALAYSV 73 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALIDGRSIPEDLPCQAFAVI 137 + ID+ NI +AT ++ AVE+L+ + P +ID I D+ +F + Sbjct: 74 NFVDQGVIDEINIKQATRLSMKRAVESLKTKDNKFIKPDLIVIDAEEIDTDIKQMSF--V 131 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD I+ ASI+AKV RD M+ YP YGF+ H GY T H+++I E G +H Sbjct: 132 KGDEKLYPISCASIVAKVIRDEYMKDMAVIYPQYGFEKHKGYGTKLHREMILEHGECPLH 191 Query: 198 RLTFRPLRNL 207 R TF LR L Sbjct: 192 RKTF--LRKL 199 >gi|224025200|ref|ZP_03643566.1| hypothetical protein BACCOPRO_01934 [Bacteroides coprophilus DSM 18228] gi|224018436|gb|EEF76434.1| hypothetical protein BACCOPRO_01934 [Bacteroides coprophilus DSM 18228] Length = 200 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/176 (40%), Positives = 105/176 (59%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSKK++ K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPHDFRNELLNDSKKLTEKQRYALREVIEREALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI A+ A++ A++ L++ P+ LIDG + ++KGD LS Sbjct: 73 VTPEEIDRINILNASFLAMHRAIDQLKIRPQHLLIDGNRFNKYADIPHTTIVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M ++YP Y + S+ GYPT KH++ IK+ G + HR++F Sbjct: 133 IAAASILAKTYRDDYMNRLAEEYPAYDWKSNKGYPTVKHREAIKKWGVTPYHRMSF 188 >gi|302380879|ref|ZP_07269341.1| ribonuclease HII [Finegoldia magna ACS-171-V-Col3] gi|302311257|gb|EFK93276.1| ribonuclease HII [Finegoldia magna ACS-171-V-Col3] Length = 207 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/190 (42%), Positives = 108/190 (56%), Gaps = 12/190 (6%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + GIDEVGRG LAGPVV AII+ N I G+ DSKK+S KKR + + I + A+ S+ Sbjct: 14 ICGIDEVGRGPLAGPVVTCAIIMPKNCEIIEGVTDSKKLSEKKRIKFKDMILNQALAYSV 73 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALIDGRSIPEDLPCQAFAVI 137 ID+ NI +AT ++ AVE+L+ + P +ID I D+ +F + Sbjct: 74 DFVDQGVIDEINIKQATRLSMKKAVESLKTKDNKFIKPDLIVIDAEEIDTDIKQMSF--V 131 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD I+ ASI+AKV RD M+ YP YGF+ H GY T H+++I E G +H Sbjct: 132 KGDEKLYPISCASIVAKVIRDEYMKEMAVIYPQYGFEKHKGYGTKLHREMILEYGECPLH 191 Query: 198 RLTFRPLRNL 207 R TF LR L Sbjct: 192 RKTF--LRKL 199 >gi|149277087|ref|ZP_01883229.1| ribonuclease HII [Pedobacter sp. BAL39] gi|149231964|gb|EDM37341.1| ribonuclease HII [Pedobacter sp. BAL39] Length = 203 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/176 (42%), Positives = 99/176 (56%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL P+ IP + DSKK++HK+R L I A+ +++S Sbjct: 13 AGCDEAGRGCLAGPVFAAAVILPPDFIPGELTDSKKLNHKQRAALRIIIEQEALAWAVAS 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 H+ IDK NI A+ A++ A+E L + P IDG ++KGD L+ Sbjct: 73 VDHEEIDKINILNASFLAMHRAIEQLSLKPEYLSIDGNRFKAYTGIPHSCIVKGDGKYLN 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M +YP Y + + GYPT H++ G S HR TF Sbjct: 133 IAAASILAKTHRDEHMEQLALEYPVYQWAQNKGYPTIVHRKAALAHGLSPYHRKTF 188 >gi|225849921|ref|YP_002730155.1| ribonuclease HII [Persephonella marina EX-H1] gi|225645751|gb|ACO03937.1| ribonuclease HII [Persephonella marina EX-H1] Length = 198 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/189 (41%), Positives = 108/189 (57%), Gaps = 10/189 (5%) Query: 20 EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 EK +W +AGIDE GRG +AGPVV A++I N PF DSKK++ K+REEL+ + Sbjct: 5 EKELWSKGFKNIAGIDEAGRGPVAGPVVAASVIFPQNIEPFIFKDSKKLTKKQREELFTQ 64 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A+ + I + ID+ NI+ AT A+ A+E++ + D P Sbjct: 65 IKERALAVGIGIVDNSVIDRINIYNATKLAMKRAIEDMNHNFDYLITDYVKFD---PYPH 121 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++ K D SLS+AAASIIAKV RDR+M K YP + FD H GY T H++ I G Sbjct: 122 ISLKKADEKSLSVAAASIIAKVFRDRIMEEFSKYYP-HSFDKHKGYLTELHREEIIRYGL 180 Query: 194 SCIHRLTFR 202 + IHR +F+ Sbjct: 181 TPIHRKSFK 189 >gi|125624006|ref|YP_001032489.1| ribonuclease HII [Lactococcus lactis subsp. cremoris MG1363] gi|146345506|sp|O30415|RNH2_LACLM RecName: Full=Ribonuclease HII; Short=RNase HII gi|124492814|emb|CAL97769.1| RnhB protein [Lactococcus lactis subsp. cremoris MG1363] gi|300070776|gb|ADJ60176.1| ribonuclease HII [Lactococcus lactis subsp. cremoris NZ9000] Length = 257 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/197 (41%), Positives = 118/197 (59%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E E + + + +AGIDEVGRG LAGPVV AA+IL N G+NDSKK+ K + Sbjct: 59 LEFEKELYSQEIELIAGIDEVGRGPLAGPVVTAAVILPKNCKIRGLNDSKKVPKSKHHAI 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +I A+ I + + ID+ NI++AT A+ AV L + P LID + DLP Sbjct: 119 LSEIQEKALAIGVGIVDAEKIDEVNIYEATKIAMIQAVSKLSLKPEHLLIDAMVL--DLP 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD+ S SIAAASI+AKVTRD +M+ ++P+Y F+ + GY TAKH + + Sbjct: 177 IAQTKIIHGDARSASIAAASIVAKVTRDEMMKDFALEFPEYDFEHNAGYGTAKHLAALTK 236 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR ++ P++++ Sbjct: 237 YGITRIHRKSYEPIKSM 253 >gi|33866676|ref|NP_898235.1| ribonuclease HII [Synechococcus sp. WH 8102] gi|33633454|emb|CAE08659.1| ribonuclease HII [Synechococcus sp. WH 8102] Length = 239 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/186 (38%), Positives = 107/186 (57%), Gaps = 15/186 (8%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA-I 80 VAG+DEVGRG L GPV A++L+ N G+ DSK++S ++R +L I A Sbjct: 53 VAGVDEVGRGCLFGPVFAGAVVLEAANASRLQQEGLTDSKRLSARRRGDLVPLIEHEAEA 112 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF-----A 135 + +S + ID+ I AT A+ A++ L P L+DG +LP + + + Sbjct: 113 WGLGQSSTREIDRLGIRPATELAMLRALQRLPNRPELVLVDG-----NLPLRPWTGEQRS 167 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 ++ GD SL+IAAAS+IAK RD LM+ +++P YG + H GY TA H+ + + GPS Sbjct: 168 IVAGDQHSLAIAAASVIAKQCRDALMQRLSQRFPGYGLERHAGYGTALHRAALLDLGPSA 227 Query: 196 IHRLTF 201 +HR +F Sbjct: 228 LHRRSF 233 >gi|88807950|ref|ZP_01123461.1| Ribonuclease HII and HIII [Synechococcus sp. WH 7805] gi|88787989|gb|EAR19145.1| Ribonuclease HII and HIII [Synechococcus sp. WH 7805] Length = 194 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/186 (38%), Positives = 106/186 (56%), Gaps = 15/186 (8%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA-I 80 + G+DEVGRG L GPV AA+ L + G+ DSK +S ++R +L +I + A Sbjct: 2 IVGVDEVGRGCLFGPVFAAAVSLTESAAAELTALGLTDSKALSARRRVDLVPQIQAKASA 61 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA----- 135 ++ S + ID H I AT A+ A++ L P L+DG LP + +A Sbjct: 62 WALGQGSAREIDAHGIRVATELAMLRALQKLPKHPELVLVDG-----VLPLRLWAGDQRS 116 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 +++GDS SIAAAS++AKVTRD LM+ +++P YG + H GY T H+Q + GP+ Sbjct: 117 IVRGDSKEASIAAASVLAKVTRDGLMQRLAERFPGYGLERHAGYGTVLHRQSLLAAGPTS 176 Query: 196 IHRLTF 201 +HR +F Sbjct: 177 MHRRSF 182 >gi|39932283|sp|Q7U4C6|RNH2_SYNPX RecName: Full=Ribonuclease HII; Short=RNase HII Length = 224 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 69/181 (38%), Positives = 103/181 (56%), Gaps = 5/181 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA-I 80 VAG+DEVGRG L GPV A++L+ N G+ DSK++S ++R +L I A Sbjct: 38 VAGVDEVGRGCLFGPVFAGAVVLEAANASRLQQEGLTDSKRLSARRRGDLVPLIEHEAEA 97 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 + +S + ID+ I AT A+ A++ L P L+DG + +++ GD Sbjct: 98 WGLGQSSTREIDRLGIRPATELAMLRALQRLPNRPELVLVDGNLPLRPWTGEQRSIVAGD 157 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 SL+IAAAS+IAK RD LM+ +++P YG + H GY TA H+ + + GPS +HR + Sbjct: 158 QHSLAIAAASVIAKQCRDALMQRLSQRFPGYGLERHAGYGTALHRAALLDLGPSALHRRS 217 Query: 201 F 201 F Sbjct: 218 F 218 >gi|329114181|ref|ZP_08242943.1| Ribonuclease HII [Acetobacter pomorum DM001] gi|326696257|gb|EGE47936.1| Ribonuclease HII [Acetobacter pomorum DM001] Length = 215 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 89/204 (43%), Positives = 120/204 (58%), Gaps = 10/204 (4%) Query: 12 FELEAM---VREKNMWP-VAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKIS 64 E EAM RE+ + VAG+DEVGRG LAGPVV AA++ P ++ I+DSKK+ Sbjct: 1 MEREAMPDFTREQQLGGRVAGVDEVGRGPLAGPVVAAAVVFGAGVPADLAAVIDDSKKLK 60 Query: 65 HKKREELYEKI--TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 RE + E++ I I +AS IDK NIH A A+ AV L +P L+DG Sbjct: 61 PAVREAIAERLPQVPGIEIGIGAASTAEIDKLNIHHAAHLAMQRAVGRLPRLPDHVLVDG 120 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 +P D C A A++ GD +SLSIAAASI+AKV RDR M ++PDYG++ + GY TA Sbjct: 121 NKLP-DFGCAAQAIVGGDRVSLSIAAASIVAKVVRDRAMARLDARWPDYGWEKNAGYGTA 179 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRN 206 H++ + G + HR TF +R Sbjct: 180 VHRKALISVGITPHHRKTFGTVRR 203 >gi|150016066|ref|YP_001308320.1| ribonuclease HII [Clostridium beijerinckii NCIMB 8052] gi|189043579|sp|A6LSN4|RNH2_CLOB8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|149902531|gb|ABR33364.1| Ribonuclease H [Clostridium beijerinckii NCIMB 8052] Length = 270 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/216 (41%), Positives = 128/216 (59%), Gaps = 20/216 (9%) Query: 5 SIPERPHFELEAMVRE----KNMWP----------VAGIDEVGRGALAGPVVVAAIILDP 50 S+ E+ +LE+ + E K M+ +AG+DEVGRG LAGP+V ++ILD Sbjct: 51 SLKEKIEKDLESYLNEVKRVKTMYEFDKSFGSYRYIAGVDEVGRGPLAGPIVACSVILDL 110 Query: 51 N----NIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIY 105 N ++ INDSKK+ KREEL E I A+ I+ +S++ ID+ I A Sbjct: 111 NVLEKDLILYINDSKKVKEHKREELSEIIKEKALSYQIAVSSNKEIDEKGIAFANNKVFL 170 Query: 106 HAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165 + +L + P L DG I ++ + +VIKGD+ S SIAAASI+AKV RDRLM+ Sbjct: 171 ESCNSLSIKPDLVLSDGYLIK-NIGIENKSVIKGDTKSASIAAASIVAKVYRDRLMKEYA 229 Query: 166 KKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 KKYP Y F+++VGY T+KH + +K+ G S IHR +F Sbjct: 230 KKYPHYDFENNVGYGTSKHIEGLKKYGKSDIHRNSF 265 >gi|325285587|ref|YP_004261377.1| Ribonuclease H [Cellulophaga lytica DSM 7489] gi|324321041|gb|ADY28506.1| Ribonuclease H [Cellulophaga lytica DSM 7489] Length = 208 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/181 (41%), Positives = 103/181 (56%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 G DE GRG LAGPV AAIIL N +NDSK +S KKRE L I AI Sbjct: 22 TGTDEAGRGCLAGPVTAAAIILPENFKNDILNDSKLLSEKKRELLKPIIEEQAICY--GV 79 Query: 87 SHQY---IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +H Y ID+ NI A++ A++ +++ L P ++DG + +IKGDS Sbjct: 80 THIYPKKIDEINILNASILAMHKSIDKLTTKPEFIIVDGNRFKPYKKIKHECIIKGDSKF 139 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAAS++AK RD M HK++P Y + + GYPT +H++ I+E G + HR +F+ Sbjct: 140 LSIAAASVLAKTYRDAYMEKIHKEFPMYNWKKNKGYPTKEHREAIREFGLTKYHRKSFKQ 199 Query: 204 L 204 L Sbjct: 200 L 200 >gi|238796623|ref|ZP_04640130.1| Ribonuclease HII [Yersinia mollaretii ATCC 43969] gi|238719601|gb|EEQ11410.1| Ribonuclease HII [Yersinia mollaretii ATCC 43969] Length = 166 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/163 (43%), Positives = 98/163 (60%), Gaps = 2/163 (1%) Query: 46 IILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAI 104 +ILDP G+ DSKK+S K+R LY++IT A+ S+ A + ID NI AT+ A+ Sbjct: 1 MILDPKRPIVGLADSKKLSEKRRLSLYDEITDKALSWSLGRAEPEEIDSLNILHATMLAM 60 Query: 105 YHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA 164 AV L + P LIDG P+ L + AV+KGDS I+AASI+AKVTRDR M Sbjct: 61 QRAVAGLHITPDYVLIDGNRCPK-LAMPSLAVVKGDSRVAEISAASILAKVTRDREMTEL 119 Query: 165 HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 + +P+YGF H GYPTA H + + G + HR +F P++ + Sbjct: 120 DRDFPEYGFAQHKGYPTAVHLEKLYAFGATEHHRRSFGPVKRV 162 >gi|118466028|ref|YP_882929.1| ribonuclease HII [Mycobacterium avium 104] gi|189043629|sp|A0QJ41|RNH2_MYCA1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|118167315|gb|ABK68212.1| ribonuclease HII [Mycobacterium avium 104] Length = 230 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/201 (38%), Positives = 113/201 (56%), Gaps = 10/201 (4%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE+ + + PVAG+DEVGRGA AGP+VVAA +L P + ++DSKK++ RE L Sbjct: 11 LESALYRSGLGPVAGVDEVGRGACAGPLVVAACVLGPGKLESLAALDDSKKLTESVRERL 70 Query: 72 YEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + I A ++ I A +D+ +H A ++ + AV L + P L DG +P Sbjct: 71 FPVIRRYALAYHVVFIPPAE---VDRRGVHVANIEGMRRAVAGLSLRPGYVLSDGFRVP- 126 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L + VI GD+++ IAAAS++AKV+RDRLM ++P YGF H GY T H Sbjct: 127 GLAVPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMDAEHPGYGFADHKGYSTPAHSAA 186 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 + GP HR +F +R ++ Sbjct: 187 LARLGPCPQHRHSFINVRRVA 207 >gi|328949830|ref|YP_004367165.1| Ribonuclease H [Marinithermus hydrothermalis DSM 14884] gi|328450154|gb|AEB11055.1| Ribonuclease H [Marinithermus hydrothermalis DSM 14884] Length = 199 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/180 (42%), Positives = 103/180 (57%), Gaps = 5/180 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 V G+DE GRGALAGP+VV A+IL P PF DSK K RE L ++ +A+ ++ Sbjct: 15 VCGVDEAGRGALAGPIVVGAVILPPGPHPF--RDSKACPPKTREALLARLERTALAYAVG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A +D + KAT A + A+ L+ P + D + DLP A V K + S+ Sbjct: 73 VAEAGEVDALGVLKATHLAAHRALAALEARPDHLITDYLFLETDLPLTA--VPKAEEKSV 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 ++AAASI+AKVTRDR+MR + YP YGF H GY T H + + GPS +HR F P+ Sbjct: 131 TVAAASILAKVTRDRIMRELDRAYPGYGFAQHKGYGTRAHLEALARLGPSPVHRRRFAPV 190 >gi|88658621|ref|YP_507735.1| ribonuclease HII [Ehrlichia chaffeensis str. Arkansas] gi|123492872|sp|Q2GFP8|RNH2_EHRCR RecName: Full=Ribonuclease HII; Short=RNase HII gi|88600078|gb|ABD45547.1| ribonuclease HII [Ehrlichia chaffeensis str. Arkansas] Length = 209 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/198 (42%), Positives = 119/198 (60%), Gaps = 4/198 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREE 70 E+ ++ K+ + G+DEVG G+LAGPVV AA+ N+I + I DSKK++ KKR E Sbjct: 9 EISKLINNKHC-TIVGVDEVGYGSLAGPVVSAAVFFPKHDNHITYNIQDSKKLTPKKRLE 67 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +Y IT SI A ID++NI AT A+ A+ L ++DG +PE LP Sbjct: 68 IYNIITPMVKWSIGLAEVHEIDQYNILNATHIAMQRALRGLNSNIDYVIVDGNKVPE-LP 126 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A AV+ GD+IS+SIAAASIIAKVTRD+LM H ++P Y ++ + GY T H + + + Sbjct: 127 WNAKAVVDGDNISISIAAASIIAKVTRDKLMETLHIQFPQYNWNKNKGYGTKHHLESLHK 186 Query: 191 KGPSCIHRLTFRPLRNLS 208 G + HR TF P ++ Sbjct: 187 YGKTIHHRNTFAPASGIT 204 >gi|332298244|ref|YP_004440166.1| Ribonuclease H [Treponema brennaborense DSM 12168] gi|332181347|gb|AEE17035.1| Ribonuclease H [Treponema brennaborense DSM 12168] Length = 197 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/192 (39%), Positives = 106/192 (55%), Gaps = 18/192 (9%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + G+DE GRG LAGPV A+IL P+ +NDSKK+S K+R L I A ++ Sbjct: 6 ICGLDEAGRGPLAGPVSAGAVILPPDFPVELLNDSKKLSEKRRAVLESLIKERACWGVAL 65 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENL-QVIPR--------------SALIDGRSIPE-DL 129 H ID+ NI +A+L A+ A + + Q +P SA+ DG P+ + Sbjct: 66 VDHTVIDEINILQASLLAMKLAFDQMRQKLPAFCASRFGSCAQPLVSAIADGTFCPDIRV 125 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 PC A K D+ ++ AASI+AK RDR+M + YP YG++ H GYPT H+++ K Sbjct: 126 PC--VARPKADATESAVMAASILAKTERDRVMIAYGQLYPQYGYEKHKGYPTKAHRELCK 183 Query: 190 EKGPSCIHRLTF 201 GPS I RLTF Sbjct: 184 LLGPSPIQRLTF 195 >gi|253315602|ref|ZP_04838815.1| ribonuclease HII [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 232 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/168 (44%), Positives = 104/168 (61%), Gaps = 4/168 (2%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E +++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPITK 115 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174 LP ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFE 221 >gi|325299103|ref|YP_004259020.1| Ribonuclease H [Bacteroides salanitronis DSM 18170] gi|324318656|gb|ADY36547.1| Ribonuclease H [Bacteroides salanitronis DSM 18170] Length = 200 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 101/179 (56%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL +NDSKK++ ++R +L I S A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPSGYQNELLNDSKKLTERQRYKLRNIIESDALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S ID+ NI A+ A++ AVE L V P+ LIDG V+KGD LS Sbjct: 73 VSPAEIDQINILNASFLAMHRAVEQLAVRPQHLLIDGNRFNPYPGIPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H +YP Y + + GYPT KH++ I+ G + HR++F L Sbjct: 133 IAAASILAKTYRDDYMNCLHDEYPLYDWKGNKGYPTRKHREAIRLYGTTPYHRMSFNLL 191 >gi|262167732|ref|ZP_06035434.1| ribonuclease HII [Vibrio cholerae RC27] gi|262023797|gb|EEY42496.1| ribonuclease HII [Vibrio cholerae RC27] Length = 157 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/152 (46%), Positives = 95/152 (62%), Gaps = 2/152 (1%) Query: 55 FGINDSKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQV 113 G+NDSKK+S KKR L+ +I A+ ++ S Q ID+ NI +AT+ A+ AV L++ Sbjct: 1 MGLNDSKKLSEKKRLALFPEIQVKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRI 60 Query: 114 IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 P LIDG IP+ LP +A AV+KGD I+AASIIAKV RD+ M K+YP +GF Sbjct: 61 QPDLVLIDGNKIPK-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGF 119 Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 H GYPTA H I++ G HR +F P++ Sbjct: 120 AKHKGYPTAAHFAAIEQHGVIEQHRKSFGPVK 151 >gi|33241107|ref|NP_876049.1| ribonuclease HII [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|39932302|sp|Q7VA11|RNH2_PROMA RecName: Full=Ribonuclease HII; Short=RNase HII gi|33238637|gb|AAQ00702.1| Ribonuclease HII [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 191 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/183 (43%), Positives = 102/183 (55%), Gaps = 5/183 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS-S 78 + AG+DEVGRGAL GPV A+ILD I G+ DSKK+S KR L I S Sbjct: 4 YTAAGLDEVGRGALFGPVFAGAVILDNQAEDQLIDAGLKDSKKLSALKRSNLVPLIKKIS 63 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 +I +S + ID I AT A+ AV L+ P LIDG + VIK Sbjct: 64 HCWAIGQSSAREIDLLGIRNATEKAMIRAVHRLEKQPDVLLIDGCLNLRLWHGEQKTVIK 123 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 G+ + SIAAAS++AKV RD L++ +KYP YG + HVGY TA H+ I + G + +HR Sbjct: 124 GEDLYPSIAAASVLAKVARDDLIKRMAEKYPQYGLEKHVGYGTALHRAAISKFGKTKLHR 183 Query: 199 LTF 201 TF Sbjct: 184 KTF 186 >gi|317504209|ref|ZP_07962202.1| ribonuclease HII [Prevotella salivae DSM 15606] gi|315664660|gb|EFV04334.1| ribonuclease HII [Prevotella salivae DSM 15606] Length = 220 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/193 (38%), Positives = 113/193 (58%), Gaps = 11/193 (5%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG VV AA+IL + + +NDSKK++ K+R L E+I A+ ++ Sbjct: 13 AGCDEAGRGCLAGNVVAAAVILPTDYVNPLLNDSKKLTAKQRYALREQIEHEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS-----IPEDLPCQA-----FA 135 A+ + ID NI A+ A++ A++ L++ P + ++DG I + LP + Sbjct: 73 ATPEEIDNINILHASFLAMHRALDQLKLRPEAVIVDGNHFDPYVIGKGLPDEGKILPHTC 132 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 ++KGD LSIAAASI+AK RD M +++P YG++ + GYPT H Q I++ G Sbjct: 133 IVKGDGKYLSIAAASILAKTYRDDYMTEQAERFPFYGWEKNKGYPTKTHYQGIEKHGLCA 192 Query: 196 IHRLTFRPLRNLS 208 +HR +F NLS Sbjct: 193 LHRKSFNTHPNLS 205 >gi|41409068|ref|NP_961904.1| ribonuclease HII [Mycobacterium avium subsp. paratuberculosis K-10] gi|81413495|sp|Q73VP3|RNH2_MYCPA RecName: Full=Ribonuclease HII; Short=RNase HII gi|41397427|gb|AAS05287.1| RnhB [Mycobacterium avium subsp. paratuberculosis K-10] Length = 239 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/201 (38%), Positives = 113/201 (56%), Gaps = 10/201 (4%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE+ + + PVAG+DEVGRGA AGP+VVAA +L P + ++DSKK++ RE L Sbjct: 20 LESALYRSGLGPVAGVDEVGRGACAGPLVVAACVLGPGKLESLAALDDSKKLTESVRERL 79 Query: 72 YEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + I A ++ I A +D+ +H A ++ + AV L + P L DG +P Sbjct: 80 FPVIRRYALAYHVVFIPPAE---VDRRGVHVANIEGMRRAVAGLSLRPGYVLSDGFRVP- 135 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L + VI GD+++ IAAAS++AKV+RDRLM ++P YGF H GY T H Sbjct: 136 GLAVPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMDAEHPGYGFADHKGYSTPAHSAA 195 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 + GP HR +F +R ++ Sbjct: 196 LARLGPCPQHRHSFINVRRVA 216 >gi|157737860|ref|YP_001490544.1| ribonuclease HII [Arcobacter butzleri RM4018] gi|189043562|sp|A8EVA1|RNH2_ARCB4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|157699714|gb|ABV67874.1| ribonuclease HII [Arcobacter butzleri RM4018] Length = 192 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/181 (41%), Positives = 103/181 (56%), Gaps = 6/181 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M + GIDE GRG LAGP+VVA +IL + + G+NDSK +S KKRE+L+++I + Sbjct: 1 MKNLCGIDEAGRGPLAGPLVVAGVILLEDIV--GLNDSKVLSEKKREKLFDEIKEKSKYH 58 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV-IKGDS 141 I + + ID+ I +I +ENL+ S L+DG + + Q IK D+ Sbjct: 59 IVFSDAKLIDEKGISFCLKSSILEIIENLKEFSNSFLMDGNT---NFGIQILQKEIKADA 115 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++AASI+AKV+RDR M YP Y F H GY T H + IKE G S IHR TF Sbjct: 116 KYAQVSAASILAKVSRDRFMDEISPLYPKYDFHKHKGYGTKAHIEAIKEFGRSDIHRHTF 175 Query: 202 R 202 + Sbjct: 176 K 176 >gi|332638611|ref|ZP_08417474.1| ribonuclease HII [Weissella cibaria KACC 11862] Length = 254 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 81/195 (41%), Positives = 114/195 (58%), Gaps = 13/195 (6%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL---- 71 E++ W +AG+DEVGRG LAGPVV AA+++D ++DSK++S K R L Sbjct: 62 ERDAWSEGLVLAGVDEVGRGPLAGPVVAAAVVIDDQFDLLAVHDSKQLSEKARLALDAAI 121 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E++ + A + +A+ ID NI++A+ A+ A+ENL V LID ++ DLP Sbjct: 122 KEEVVAFAFGVVDAAA---IDTLNIYEASRVAMKQAIENLSVQVDGLLIDAMTV--DLPL 176 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD S+SI AASI+AK RD LM YP YGFD + GY TA+H + Sbjct: 177 PQEKLIKGDDRSISIGAASILAKNFRDDLMAAYAVDYPGYGFDHNAGYGTAEHLAGLAAY 236 Query: 192 GPSCIHRLTFRPLRN 206 G + IHR TF P++ Sbjct: 237 GVTPIHRRTFAPVKQ 251 >gi|261855823|ref|YP_003263106.1| ribonuclease H [Halothiobacillus neapolitanus c2] gi|261836292|gb|ACX96059.1| Ribonuclease H [Halothiobacillus neapolitanus c2] Length = 216 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 88/214 (41%), Positives = 127/214 (59%), Gaps = 20/214 (9%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 +P+ P FE++ AG+DE GRG LAGPVV AAI+L P++ G+NDSKK++ Sbjct: 1 MPQLPLFEMQT-----PGLIYAGVDEAGRGPLAGPVVAAAIVLYPDDPIVGVNDSKKLTE 55 Query: 66 KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENL--------QVIPR 116 ++R +L+++IT A +I+ A+ ID NI +A+L A+ AV + Q + R Sbjct: 56 RQRVKLFDEITRRAQSFAIAEATVHEIDTINILQASLLAMRRAVMAVYDQMKTQGQTLGR 115 Query: 117 SALIDGRSIPE-DLPCQAF----AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 +DG P+ + P F A+I GD+ +IA+ASI+AKVTRDRLM K YP Y Sbjct: 116 IH-VDGNRCPDLNDPDAGFMECHALIGGDARDAAIASASILAKVTRDRLMLDMDKLYPQY 174 Query: 172 GFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 F H GYPTA+H+ ++ E G HR +F P+R Sbjct: 175 EFAKHKGYPTARHRDLLIEFGACPEHRSSFAPVR 208 >gi|262382588|ref|ZP_06075725.1| ribonuclease HII [Bacteroides sp. 2_1_33B] gi|262295466|gb|EEY83397.1| ribonuclease HII [Bacteroides sp. 2_1_33B] Length = 199 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 81/181 (44%), Positives = 106/181 (58%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK++S KKR +L I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVFAAAVILPEDFKNQNLNDSKQLSEKKRYKLRPVIEREAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIP-EDLPCQAFAVIKGDSIS 143 S + IDK NI KA+ A++ A+E L+V P LIDG R P D+P V+KGD Sbjct: 73 VSPEEIDKINILKASFLAMHRAIEQLKVRPEHLLIDGNRFTPYPDIPHTT--VVKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAAS++AK RD M +YP Y + + GYPT H++ I+E G + HR TF Sbjct: 131 LSIAAASVLAKTYRDDYMNELALEYPAYHWLDNKGYPTKAHREAIRECGITPYHRKTFTL 190 Query: 204 L 204 L Sbjct: 191 L 191 >gi|159904166|ref|YP_001551510.1| ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9211] gi|159889342|gb|ABX09556.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9211] Length = 196 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 71/182 (39%), Positives = 114/182 (62%), Gaps = 7/182 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI- 80 +AG+DEVG+G L GPV AA++L+ ++ + G+ DSK ++ KR +L+ +I A Sbjct: 7 IAGLDEVGKGCLFGPVFAAAVMLNNSSENQLLDAGLKDSKLLTKAKRAQLFPEILKLADN 66 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL-PCQAFAVIKG 139 I AS + ID I KAT A+ A+ L + P LIDG S+P L +I+G Sbjct: 67 WGIGQASAKEIDSQGIRKATEKAMLRAIHKLTIHPSLLLIDG-SLPLRLWKGNQENLIRG 125 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 +S S +IAAAS+IAK +RD++++ K++P YG +++VGY T+ H++ + + GP+ +HR Sbjct: 126 ESKSPAIAAASVIAKESRDQVIKRLAKQFPGYGLETNVGYGTSNHRKALIKSGPTQLHRK 185 Query: 200 TF 201 +F Sbjct: 186 SF 187 >gi|332884737|gb|EGK04993.1| ribonuclease HII [Dysgonomonas mossii DSM 22836] Length = 199 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/178 (42%), Positives = 106/178 (59%), Gaps = 5/178 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + I +NDSK+++ K+R L I A+ +I Sbjct: 13 AGCDEAGRGCLAGAVFAAAVILPKDFICEKLNDSKQLTEKERYALRPLIEEQALAWAIGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143 + + ID+ NI A+ A+ AV +L+ P+ LIDG ED+P V+KGD Sbjct: 73 VNQKEIDEINILNASFLAMQRAVASLKTRPQHLLIDGNRFRKYEDIPHTC--VVKGDGKL 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 L IAAAS++AK RD M H+++P Y +D + GYPT KH++ I++ G + HRLTF Sbjct: 131 LPIAAASVLAKTYRDDYMLNLHREHPLYDWDHNKGYPTKKHREAIEKYGVTPYHRLTF 188 >gi|260772236|ref|ZP_05881152.1| ribonuclease HII [Vibrio metschnikovii CIP 69.14] gi|260611375|gb|EEX36578.1| ribonuclease HII [Vibrio metschnikovii CIP 69.14] Length = 170 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 73/166 (43%), Positives = 98/166 (59%), Gaps = 2/166 (1%) Query: 41 VVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKA 99 +V AA+ILDP G+NDSKK+S KKR L +I + A+ S+ S ID+ NI +A Sbjct: 1 MVTAAVILDPAQPINGLNDSKKLSEKKRLALLPEIQAKALAWSVGRCSPSEIDQLNIFQA 60 Query: 100 TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR 159 T+ A+ AV L + P L+DG +P+ LP A AV+KGD I+AASIIAKV RD+ Sbjct: 61 TMLAMQRAVAGLAIQPDLVLVDGNKVPK-LPMAAEAVVKGDLRVAQISAASIIAKVVRDQ 119 Query: 160 LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 M YP +GF H GYPT H I++ G HR +F P++ Sbjct: 120 EMAELDLLYPQFGFAQHKGYPTKAHFAAIEQHGVIDQHRRSFSPVK 165 >gi|148243275|ref|YP_001228432.1| ribonuclease HII [Synechococcus sp. RCC307] gi|189043670|sp|A5GW20|RNH2_SYNR3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|147851585|emb|CAK29079.1| Ribonuclease HII [Synechococcus sp. RCC307] Length = 202 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 73/181 (40%), Positives = 102/181 (56%), Gaps = 5/181 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP---NNIP-FGINDSKKISHKKREELYEKITSSAI- 80 VAG+DEVGRG L GPV AA+IL + +P G+ DSK +S K+R+ L +I S + Sbjct: 3 VAGVDEVGRGCLFGPVWAAAVILKAEAFDRLPALGVTDSKALSAKRRQALLPEIHSHCLS 62 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 + AS ID I AT A+ A++ L P L+DG P V+ GD Sbjct: 63 YGLGQASAACIDAVGIRAATELAMCRALQRLCHSPDHVLVDGSLPLRPWPGSQETVVAGD 122 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S L+IA ASI+AK RD L++ +++P YG SH GY T H+ + + GP+ +HRL+ Sbjct: 123 SHCLAIACASILAKEGRDALLQRLDQRWPGYGLASHKGYGTKAHRTALLQWGPTPLHRLS 182 Query: 201 F 201 F Sbjct: 183 F 183 >gi|294661258|ref|YP_003573134.1| hypothetical protein Aasi_1724 [Candidatus Amoebophilus asiaticus 5a2] gi|227336409|gb|ACP21006.1| hypothetical protein Aasi_1724 [Candidatus Amoebophilus asiaticus 5a2] Length = 196 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 78/177 (44%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG DEVGRG LAGPVV AA+IL F + DSKK++ K+R E+ I AI +I Sbjct: 9 VAGCDEVGRGCLAGPVVAAAVILPLQYYYFLLKDSKKLTPKQRIEIAAIIKKEAIDWAIG 68 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A+ + ID+ NI AT A++ A+ L V P LIDG + ++KGD Sbjct: 69 CATPEEIDQVNISNATHLAMHRAINKLIVKPELLLIDGNKFLPYPNIEHECIVKGDKKVN 128 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASII KV RD M+ ++ P Y ++ ++GYPT +H Q I E G S HR +F Sbjct: 129 SIAAASIIDKVYRDEYMQELAEREPGYNWEINMGYPTKEHYQAIYELGMSFHHRKSF 185 >gi|326336306|ref|ZP_08202477.1| ribonuclease HII [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691480|gb|EGD33448.1| ribonuclease HII [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 197 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 72/181 (39%), Positives = 107/181 (59%), Gaps = 9/181 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL + +NDSK+++ K+R EL I A+ ++ Sbjct: 11 AGTDEAGRGCLAGPVTAAAVILPEDFYHPLLNDSKQMTEKQRNELRSIIEMQALSYAVVH 70 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLP--CQAFAVIKGDS 141 S Q ID+ NI A+++A+ A++ L + P ++DG +++P CQ +KGD+ Sbjct: 71 LSPQRIDQINILNASIEAMQQALDKLSLTPEFIVVDGNRFKPYKEIPYSCQ----VKGDA 126 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + IAAAS++AK RD M HK++P Y +D + GYPT +H+ I E G HR TF Sbjct: 127 RFMRIAAASVLAKTHRDAYMESLHKQFPMYHWDKNKGYPTREHRAAILEFGACEYHRKTF 186 Query: 202 R 202 + Sbjct: 187 Q 187 >gi|126654070|ref|ZP_01725896.1| ribonuclease HII [Bacillus sp. B14905] gi|126589450|gb|EAZ83597.1| ribonuclease HII [Bacillus sp. B14905] Length = 253 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 79/184 (42%), Positives = 113/184 (61%), Gaps = 4/184 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DE GRG LAGPVV AA+IL N+ G+NDSK++S KR I AI I Sbjct: 70 IAGVDEAGRGPLAGPVVTAAVILPTNSEALVGLNDSKQLSKDKRNAFAALIKEHAISYFI 129 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 Q ID+ NI++AT ++ +VE+L P L+D ++P +P + +IKGD+ S Sbjct: 130 HFQPAQQIDELNIYEATKQSMKASVESLSRKPDYVLVDAMTLPMAIPQDS--IIKGDAKS 187 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 L+IAAASI+AK RD M K +P YGF H GY T +H + ++E GP+ HR +F P Sbjct: 188 LAIAAASILAKTARDDYMEQLDKDFPMYGFAQHAGYGTKQHLKALEEYGPTIHHRKSFEP 247 Query: 204 LRNL 207 ++++ Sbjct: 248 VKSM 251 >gi|300858737|ref|YP_003783720.1| ribonuclease HII [Corynebacterium pseudotuberculosis FRC41] gi|300686191|gb|ADK29113.1| Ribonuclease HII [Corynebacterium pseudotuberculosis FRC41] gi|302206444|gb|ADL10786.1| Ribonuclease HII [Corynebacterium pseudotuberculosis C231] gi|302331000|gb|ADL21194.1| ribonuclease HII [Corynebacterium pseudotuberculosis 1002] Length = 240 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 72/191 (37%), Positives = 102/191 (53%), Gaps = 4/191 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREEL 71 E + + + PVAGIDE GRG+ GP+ +AA IL I + DSKK+S + REEL Sbjct: 31 FEGTLEKWGLGPVAGIDEAGRGSCCGPITIAACILPSRPIAALATLTDSKKLSSRMREEL 90 Query: 72 YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y I A+ SI S ID++ I A + + A+ L P LID +P L Sbjct: 91 YPLIKKYAVAWSILHISASEIDRYGIQHANISGMRRAIALLSKQPGYVLIDAMRVP-GLT 149 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 C + +I GD+ + IAAAS++AK +RD LM ++YP YG H GY T H ++ Sbjct: 150 CPSLPIIGGDTAARCIAAASVLAKQSRDELMIDLDREYPGYGLGDHKGYGTKSHIDAVRR 209 Query: 191 KGPSCIHRLTF 201 G + HR ++ Sbjct: 210 HGGTPEHRYSY 220 >gi|294155904|ref|YP_003560288.1| ribonuclease HII [Mycoplasma crocodyli MP145] gi|291599929|gb|ADE19425.1| ribonuclease HII [Mycoplasma crocodyli MP145] Length = 204 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 72/186 (38%), Positives = 109/186 (58%), Gaps = 2/186 (1%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 K + G+DE GRGALAGP+VVA +I N INDSKK++ K+RE L+ KI AI Sbjct: 10 KRFEKILGMDEAGRGALAGPLVVAGVIFPANYKNDEINDSKKLTSKQRENLFFKIQEDAI 69 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 I S+ +D+ N KA++ + + NL +I + ++KG Sbjct: 70 AYEIIELSNFEVDELNPKKASIVGM-EKIANLLADKYDVVITDFEKLNLQDKKQINLVKG 128 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D+IS+S+AAASI+AK RD++MR H KYP + +D + GY T H + +++ G S HRL Sbjct: 129 DTISISVAAASILAKHYRDQVMRKLHLKYPMFSWDKNKGYGTKLHLEGLRKNGVSPFHRL 188 Query: 200 TFRPLR 205 +++P++ Sbjct: 189 SYKPVK 194 >gi|302831956|ref|XP_002947543.1| hypothetical protein VOLCADRAFT_87765 [Volvox carteri f. nagariensis] gi|300267407|gb|EFJ51591.1| hypothetical protein VOLCADRAFT_87765 [Volvox carteri f. nagariensis] Length = 678 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 121/247 (48%), Gaps = 48/247 (19%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALA----------------GPVVVAAIILDPNNI 53 P ++E +R + V G DE GRG LA G + V A P Sbjct: 226 PTQDMETQLRAQGYLAVGGADEAGRGPLAGPVVAAVVVLPPRSDPGLMGVGAEGDAPWQP 285 Query: 54 PFGINDSKKISHKKREELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENL 111 P G+NDSK +S ++RE +YE++T+ + ++S H+ ID+ NI +A L A+ + L Sbjct: 286 PPGLNDSKAMSEEEREAVYEQLTTDPRVKWAVSVVEHEEIDRINILQAALGAMRESAVKL 345 Query: 112 QVIPRSA------------------------------LIDGRSIPEDLPCQAFAVIKGDS 141 + L+DG +P+DLP AV+KGD+ Sbjct: 346 LQQKQQQGQQQQQQQDAGSAAADPPSAPPPSPALDFLLVDGNRLPKDLPVPGRAVVKGDA 405 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAAS IAKVTRDRLM ++YP YGF H GY H + I++ GPS +HR +F Sbjct: 406 TVSCIAAASCIAKVTRDRLMMKLDEQYPQYGFAQHKGYGVPAHMEAIRKYGPSAVHRRSF 465 Query: 202 RPLRNLS 208 P+++++ Sbjct: 466 EPVKSMT 472 >gi|254776202|ref|ZP_05217718.1| ribonuclease HII [Mycobacterium avium subsp. avium ATCC 25291] Length = 239 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 77/201 (38%), Positives = 113/201 (56%), Gaps = 10/201 (4%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE+ + + PVAG+DEVGRGA AGP+VVAA +L P + ++DSKK++ RE L Sbjct: 20 LESALYRSGLGPVAGVDEVGRGACAGPLVVAACVLGPAKLESLAALDDSKKLTESVRERL 79 Query: 72 YEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + I A ++ I A +D+ +H A ++ + AV L + P L DG +P Sbjct: 80 FPVIRRYALAYHVVFIPPAE---VDRRGVHVANIEGMRRAVAGLSLRPGYVLSDGFRVP- 135 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L + VI GD+++ IAAAS++AKV+RDRLM ++P YGF H GY T H Sbjct: 136 GLAVPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMDAEHPGYGFADHKGYSTPAHSAA 195 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 + GP HR +F +R ++ Sbjct: 196 LARLGPCPQHRHSFINVRRVA 216 >gi|299536766|ref|ZP_07050074.1| ribonuclease HII [Lysinibacillus fusiformis ZC1] gi|298727778|gb|EFI68345.1| ribonuclease HII [Lysinibacillus fusiformis ZC1] Length = 253 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 78/185 (42%), Positives = 115/185 (62%), Gaps = 6/185 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DE GRG LAGPVV AA+IL P N G+NDSK++S KR + A+ Sbjct: 70 IAGVDEAGRGPLAGPVVTAAVIL-PTNCEALVGLNDSKQLSKDKRNCFATLVKEHAVSYF 128 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I S Q ID+ NI++AT ++ +VE+L P L+D ++P +P + +IKGD+ Sbjct: 129 IHFQSAQQIDELNIYEATKQSMKVSVESLSTKPDVVLVDAMTLPITIPQDS--IIKGDAK 186 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SL+IAAASI+AK RD M +++P YGF H GY T +H + ++E GP+ HR +F Sbjct: 187 SLAIAAASILAKTARDEYMEQLDEEFPMYGFGQHAGYGTKQHLKALEEFGPTIHHRKSFE 246 Query: 203 PLRNL 207 P++++ Sbjct: 247 PIKSM 251 >gi|331698498|ref|YP_004334737.1| Ribonuclease H [Pseudonocardia dioxanivorans CB1190] gi|326953187|gb|AEA26884.1| Ribonuclease H [Pseudonocardia dioxanivorans CB1190] Length = 265 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 75/194 (38%), Positives = 110/194 (56%), Gaps = 4/194 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKR 68 ++ L++ + + PVAG+DE GRGA AGP+VVAA +L P + G+ DSK ++ R Sbjct: 35 NWTLQSTLHRHGLGPVAGVDEAGRGACAGPLVVAACVLRPGDAQRLAGLTDSKLLTAAAR 94 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 EE +E +T A+ +S+ + ID+ +H A ++ + AV L P L DG + Sbjct: 95 EEYFELLTRRAVDLSVVVIPPREIDRRGVHAANIEGMRRAVAGLAQRPGYVLTDGFPV-R 153 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 A AV KGD ++ +AAAS++AKVTRDR+M ++ P YGF H GY T H Sbjct: 154 GFGAPALAVPKGDLVAACVAAASVLAKVTRDRIMVELDERLPQYGFAVHKGYCTPVHDAA 213 Query: 188 IKEKGPSCIHRLTF 201 + GPS HR +F Sbjct: 214 LAAHGPSAEHRYSF 227 >gi|327313027|ref|YP_004328464.1| ribonuclease HII [Prevotella denticola F0289] gi|326944091|gb|AEA19976.1| ribonuclease HII [Prevotella denticola F0289] Length = 200 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 70/179 (39%), Positives = 104/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL P ++DSKK++ +KR L + I A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPPGYQNSLLDDSKKLTARKRYALRDTIEHDAVAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI A+ A++ A++ L+V P + ++DG +IKGD LS Sbjct: 73 VTPEEIDRINILNASFLAMHRALDQLKVRPEAVIVDGNRFTPYRKLPFATIIKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M ++YP Y + ++GYPT KH+Q I+E G + HR ++ L Sbjct: 133 IAAASILAKTYRDDYMCSLAEEYPQYDWQKNMGYPTKKHRQAIREYGITPYHRRSYNLL 191 >gi|262202029|ref|YP_003273237.1| ribonuclease H [Gordonia bronchialis DSM 43247] gi|262085376|gb|ACY21344.1| Ribonuclease H [Gordonia bronchialis DSM 43247] Length = 228 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 81/195 (41%), Positives = 110/195 (56%), Gaps = 10/195 (5%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 E + + PVAG+DE GRGA AGP+VVAA +L P + ++DSK+++ + RE L Sbjct: 19 FEFALHRNGLGPVAGVDEAGRGACAGPLVVAACVLKPTQLTSLADLDDSKRLTERTRETL 78 Query: 72 YEKIT----SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 Y +T S + + I +A ID+ IH A ++ + AV L V P L DG +P Sbjct: 79 YRAVTRYAHSWSAVIIDAAE---IDRIGIHVANIEGMRRAVAALDVTPGYVLSDGFKVP- 134 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L + VI GD + IAAASIIAKVTRDR+M ++P Y F H GY TA H Sbjct: 135 GLTAPSLPVIGGDGAAACIAAASIIAKVTRDRIMVAMDDEHPGYDFAVHKGYSTAHHMSR 194 Query: 188 IKEKGPSCIHRLTFR 202 I GPS HR+++R Sbjct: 195 IDTAGPSPQHRMSYR 209 >gi|94969905|ref|YP_591953.1| RNase HII [Candidatus Koribacter versatilis Ellin345] gi|189043528|sp|Q1IMM1|RNH2_ACIBL RecName: Full=Ribonuclease HII; Short=RNase HII gi|94551955|gb|ABF41879.1| RNase HII [Candidatus Koribacter versatilis Ellin345] Length = 254 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 84/180 (46%), Positives = 111/180 (61%), Gaps = 3/180 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AGIDEVGRGAL GPVV AA+ILDPN G+ DSK + + RE L ++I I SI+ Sbjct: 48 IAGIDEVGRGALFGPVVAAAVILDPNYRIKGLRDSKLLPAETREILSKRIREHCIAWSIA 107 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + ID+ NI+ A+ A+ HAV L P LID + DL C +I GD++S Sbjct: 108 AVDVARIDQLNIYWASNLAMKHAVRGLSCQPDHLLIDAMKL--DLDCAQTPIIHGDALSA 165 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASIIAKV RD L+R +P+Y S+ GY KH + ++E GPS +HR +F P+ Sbjct: 166 SIAAASIIAKVHRDALIREWAPIFPEYDLASNKGYSAPKHIKALREFGPSPLHRQSFAPV 225 >gi|54026116|ref|YP_120358.1| ribonuclease HII [Nocardia farcinica IFM 10152] gi|81373729|sp|Q5YS47|RNH2_NOCFA RecName: Full=Ribonuclease HII; Short=RNase HII gi|54017624|dbj|BAD58994.1| putative RNase HII [Nocardia farcinica IFM 10152] Length = 251 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 81/196 (41%), Positives = 112/196 (57%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREEL 71 LEA + + PVAG+DE GRG AGP+VVAA +L P + G++DSKK++ REEL Sbjct: 22 LEAALIRGGLGPVAGVDEAGRGPCAGPLVVAACLLAPKAYDRLAGLDDSKKLTEAAREEL 81 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y IT A+ + ID IH A ++ + AV L+ P L DG +P L Sbjct: 82 YPVITRLALAWEVVVIPAWEIDAIGIHVANIEGMRRAVAGLRQRPGYVLTDGFRVP-GLA 140 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+ + IAAASI+AKVTRDR+M ++P YGF +H GY T +H ++ Sbjct: 141 APSLPVIGGDAAAACIAAASILAKVTRDRIMVELDSRHPGYGFAAHKGYNTPEHTAALQR 200 Query: 191 KGPSCIHRLTFRPLRN 206 GP HR ++R +R Sbjct: 201 LGPCSEHRRSWRNVRE 216 >gi|324998958|ref|ZP_08120070.1| ribonuclease HII [Pseudonocardia sp. P1] Length = 234 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 70/184 (38%), Positives = 104/184 (56%), Gaps = 5/184 (2%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREELYEKITSSA 79 + PVAG+DE GRGA AGP+VVAA +L P + G+ DSK ++ RE Y +I A Sbjct: 3 GLGPVAGVDEAGRGASAGPLVVAACVLRPADAAALDGLTDSKLLTASAREHWYGRIRKRA 62 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-ALIDGRSIPEDLPCQAFAVI 137 + +++ +D+ +H A ++ + AV L +P L DG ++ A AV Sbjct: 63 LDLAVVVIPPAEVDRRGVHIANIEGMRRAVAALTTVPPGYVLTDGFAV-RGFGRPALAVP 121 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD ++ IAAAS++AKVTRDR+M ++ YGF H GY T +H+ ++ GP H Sbjct: 122 KGDRVAACIAAASVLAKVTRDRIMTELDAEHAAYGFAVHKGYNTPEHEGALRAHGPCPEH 181 Query: 198 RLTF 201 R +F Sbjct: 182 RFSF 185 >gi|297562257|ref|YP_003681231.1| ribonuclease H [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846705|gb|ADH68725.1| Ribonuclease H [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 232 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 70/197 (35%), Positives = 112/197 (56%), Gaps = 1/197 (0%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +ELE +R VAG+DEVGRGA AGP++V A + P G+ DSK+++ K+R E+ Sbjct: 16 YELEDELRSSGARVVAGVDEVGRGAWAGPLLVCAAVPGEGAPPPGLTDSKRLTPKRRREI 75 Query: 72 YEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +++ A + +S + ID+ + +A A A++ L P + ++DGR P Sbjct: 76 ADQLRPWVADHAFGWSSPEEIDEVGMTEALHRASRRALDALSPRPDAVILDGRHDFIGRP 135 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +KGD +S+AAA+I+AKV RD LM +P YGF+ GYP+ H+ + E Sbjct: 136 WRVRTCVKGDLACVSVAAAAILAKVRRDALMAELAADHPGYGFERAAGYPSPVHRAALAE 195 Query: 191 KGPSCIHRLTFRPLRNL 207 GP+ HR+++ L +L Sbjct: 196 SGPTPHHRMSWSYLDDL 212 >gi|16329251|ref|NP_439979.1| ribonuclease HII [Synechocystis sp. PCC 6803] gi|7227925|sp|P72657|RNH2_SYNY3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|1651731|dbj|BAA16659.1| ribonuclease HII [Synechocystis sp. PCC 6803] Length = 190 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 73/181 (40%), Positives = 107/181 (59%), Gaps = 5/181 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-I 80 +AG+DEVGRGAL GPVV AA+++ I G+ DSK++S + R +L + + Sbjct: 1 MAGVDEVGRGALFGPVVAAAVLVPIEAINQLQALGVKDSKQLSPQHRSQLAQALPDYVHS 60 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 IS A I++ NI +A+L A+ AV+ L V+P L+DGR + AV GD Sbjct: 61 YGISFADVPTINRVNIRQASLLAMERAVQKLPVMPAWVLVDGRDTLPHIAMAQMAVTGGD 120 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 SL I+AASI+AKV RD L+ +++P Y S+ GY TAKH+Q +++ G + +HR Sbjct: 121 RKSLLISAASILAKVWRDTLITRLAERFPGYDLASNKGYGTAKHRQGLRQYGATPLHRPL 180 Query: 201 F 201 F Sbjct: 181 F 181 >gi|158522314|ref|YP_001530184.1| ribonuclease H [Desulfococcus oleovorans Hxd3] gi|158511140|gb|ABW68107.1| Ribonuclease H [Desulfococcus oleovorans Hxd3] Length = 195 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 87/189 (46%), Positives = 113/189 (59%), Gaps = 4/189 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E R +AG+DE GRG LAGPVV AA++ + I DSKK+S KKR LY+ Sbjct: 5 EDSARSDGFSIIAGLDEAGRGPLAGPVVAAAVVFPDDYTNDRITDSKKLSAKKRASLYDD 64 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPEDLPCQ 132 I A+ + I ID+ NI +A+L A+ AVENL P LIDG +IP P Sbjct: 65 IYRDALTVGIGIVDAVEIDRINILQASLLAMAMAVENLFPQPDFLLIDGTFTIPR--PVG 122 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++KGDS S+SIAAASI+AKV+RD +M H YP++GF H GYPT H+ I + G Sbjct: 123 QRPIVKGDSASISIAAASIVAKVSRDNMMERYHLDYPEFGFSQHKGYPTKAHRNAIFQYG 182 Query: 193 PSCIHRLTF 201 P+ IHR +F Sbjct: 183 PTLIHRASF 191 >gi|284992383|ref|YP_003410937.1| Ribonuclease H [Geodermatophilus obscurus DSM 43160] gi|284065628|gb|ADB76566.1| Ribonuclease H [Geodermatophilus obscurus DSM 43160] Length = 257 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 75/204 (36%), Positives = 110/204 (53%), Gaps = 8/204 (3%) Query: 4 NSIPERPH--FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN---IPFGIN 58 S+ +RP +++E + + VAG DE GRGA AGP+V AA +L +P G+ Sbjct: 19 TSVDDRPDALWDMERSLHRRGFPAVAGADEAGRGACAGPLVAAACVLPAGRRGRVP-GLA 77 Query: 59 DSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117 DSK ++ RE +YE++ A+ S+ +D +H ++A+ AV L Sbjct: 78 DSKLLTVAARERVYEEVVDRAVAWSVVLLPVADLDARGMHVTNIEALRRAVWALDPGADY 137 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 L DG +P L AV KGD I+ +AAAS++AKVTRDR+M H+++P+Y F H Sbjct: 138 VLTDGFPVP-GLARPTLAVWKGDRIAACVAAASVLAKVTRDRIMLDLHERWPEYDFAVHK 196 Query: 178 GYPTAKHQQVIKEKGPSCIHRLTF 201 GY TA H ++ GP HR F Sbjct: 197 GYSTAAHDAALQRYGPCPEHRKRF 220 >gi|258542064|ref|YP_003187497.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-01] gi|256633142|dbj|BAH99117.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-01] gi|256636199|dbj|BAI02168.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-03] gi|256639254|dbj|BAI05216.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-07] gi|256642308|dbj|BAI08263.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-22] gi|256645363|dbj|BAI11311.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-26] gi|256648418|dbj|BAI14359.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-32] gi|256651471|dbj|BAI17405.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654462|dbj|BAI20389.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-12] Length = 215 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 83/186 (44%), Positives = 112/186 (60%), Gaps = 6/186 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISHKKREELYEKI--TSSAI 80 VAG+DEVGRG LAGPVV AA++ P ++ I+DSKK+ RE + E++ Sbjct: 19 VAGVDEVGRGPLAGPVVAAAVVFGAGVPADLAAVIDDSKKLKPAVREAIAERLPQVPGIE 78 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I I +AS IDK NIH A A+ AV L +P L+DG +P D C A A++ GD Sbjct: 79 IGIGAASTAEIDKLNIHHAAHLAMQRAVGRLPRLPDHVLVDGNKLP-DFGCDAQAIVGGD 137 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 +SLSIAAASI+AKV RDR M ++PDYG++ + GY TA H++ + G + HR T Sbjct: 138 RVSLSIAAASIVAKVVRDRAMARLDARWPDYGWEKNAGYGTAVHRKALISVGITPHHRKT 197 Query: 201 FRPLRN 206 F +R Sbjct: 198 FGTVRR 203 >gi|325269676|ref|ZP_08136289.1| ribonuclease HII [Prevotella multiformis DSM 16608] gi|324988044|gb|EGC20014.1| ribonuclease HII [Prevotella multiformis DSM 16608] Length = 200 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 70/179 (39%), Positives = 103/179 (57%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL P ++DSKK++ KR L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPPGYRNCELDDSKKLTPGKRYALRETIEHDALAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI A+ A++ A++ L+V P + ++DG ++KGD LS Sbjct: 73 VTPEEIDRINILNASFLAMHRALDQLKVRPEAVIVDGNRFTPYRKLPFATIVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M ++YP Y + ++GYPT KH+Q I+E G + HR ++ L Sbjct: 133 IAAASILAKTYRDDYMCSLAEEYPQYDWQKNMGYPTKKHRQAIREYGITPYHRKSYNLL 191 >gi|312879567|ref|ZP_07739367.1| RNase HII [Aminomonas paucivorans DSM 12260] gi|310782858|gb|EFQ23256.1| RNase HII [Aminomonas paucivorans DSM 12260] Length = 189 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 72/182 (39%), Positives = 104/182 (57%), Gaps = 5/182 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 VAG DE GRG LAGPVV AA +L P+ + G+ DSK ++ ++RE L+ + ++ Sbjct: 3 VAGTDEAGRGPLAGPVVAAAAVLTPDQRRRLMQRGLGDSKALTPRRRESLFALMEELGVL 62 Query: 82 -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 +AS ID NI A+L A+ A L P ++DG + L + GD Sbjct: 63 WRAQAASAARIDGTNILAASLWAMGRATVALDPPPDLVVVDGNARIPGLSLPQRCLPGGD 122 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 ++ ++ AAS++AKV RDR M + YP YGF H GYPTA+H++ ++ GPS +HR T Sbjct: 123 ALVPAVMAASVVAKVLRDRAMESLDRLYPGYGFAKHKGYPTAEHRRALERLGPSPVHRAT 182 Query: 201 FR 202 FR Sbjct: 183 FR 184 >gi|325106085|ref|YP_004275739.1| RNase HII [Pedobacter saltans DSM 12145] gi|324974933|gb|ADY53917.1| RNase HII [Pedobacter saltans DSM 12145] Length = 198 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 71/177 (40%), Positives = 100/177 (56%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL + + DSK+++ K R+ L +I A+ +++ Sbjct: 13 AGCDEAGRGCLAGPVFAAAVILPKDFFHPLLTDSKQLTDKDRKALRIEIEEKALAFAVAP 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 H+ ID+ NI A+ A++ A++ L + P +IDG VIKGD S Sbjct: 73 VDHEEIDRINILNASFLAMHKALDKLTIRPEFIIIDGNRFKSYNNIGHQCVIKGDGKYYS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD M H+++P Y ++ + GYPT KH+ I E G HR TFR Sbjct: 133 IAAASILAKTYRDDYMDALHEEFPLYDWNKNKGYPTTKHRLAILEHGICTYHRKTFR 189 >gi|315637651|ref|ZP_07892857.1| ribonuclease HII [Arcobacter butzleri JV22] gi|315478105|gb|EFU68832.1| ribonuclease HII [Arcobacter butzleri JV22] Length = 192 Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 75/181 (41%), Positives = 103/181 (56%), Gaps = 6/181 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M + GIDE GRG LAGP+VVA +IL + + G+NDSK +S KKRE+L+++I + Sbjct: 1 MKNLCGIDEAGRGPLAGPLVVAGVILLEDIV--GLNDSKVLSEKKREKLFDEIKEKSKHH 58 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV-IKGDS 141 I + + ID+ I +I +ENL+ S L+DG + + Q IK D+ Sbjct: 59 IVFSDAKLIDEKGISFCLKSSILEIIENLKEFSNSFLMDGNT---NFGIQILQKEIKADA 115 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++AASI+AKV+RDR M YP Y F H GY T H + IKE G S IHR TF Sbjct: 116 KYAQVSAASILAKVSRDRFMDEISPLYPKYDFHKHKGYGTKAHIEAIKEFGRSDIHRHTF 175 Query: 202 R 202 + Sbjct: 176 K 176 >gi|227549010|ref|ZP_03979059.1| ribonuclease HII [Corynebacterium lipophiloflavum DSM 44291] gi|227078920|gb|EEI16883.1| ribonuclease HII [Corynebacterium lipophiloflavum DSM 44291] Length = 213 Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 74/198 (37%), Positives = 104/198 (52%), Gaps = 10/198 (5%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREELY 72 E + + + PVAG+DE GRGA GPV VAA +L P + G+ DSK++ R LY Sbjct: 11 EVALDKAGLGPVAGVDEAGRGACFGPVTVAACVLPPRPLAQLDGLTDSKQLRPVARASLY 70 Query: 73 EKIT----SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + I S A++ I +A ID+ I A +D AV L P L+D +P Sbjct: 71 DAICDVALSFAVVHIPAAE---IDRRGIQVANVDGARRAVAKLGARPGYVLVDALRVP-G 126 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L +I GDS + IAAAS++AKV+RDRL+ ++Y DYG H GY T H + Sbjct: 127 LTAPQLPIIGGDSTARCIAAASVLAKVSRDRLVTEMAQRYADYGIAGHKGYGTQAHMAAV 186 Query: 189 KEKGPSCIHRLTFRPLRN 206 + G S HR ++ +R Sbjct: 187 RRYGASDEHRYSYANVRQ 204 >gi|45657433|ref|YP_001519.1| ribonuclease HII [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600672|gb|AAS70156.1| ribonuclease HII [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 231 Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 88/211 (41%), Positives = 110/211 (52%), Gaps = 23/211 (10%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--------IPFGINDSKKI 63 FELE P GIDE GRG AGP+ VA + N+ I G+ DSKK+ Sbjct: 10 FELEEHRFYSESIP-CGIDEAGRGPYAGPLSVALVSFSQNSLTQILEGKILKGLTDSKKL 68 Query: 64 SHKKREELYEKITSSAIISISSA-SHQYIDKHNIHKATLDAIYHAVENLQ-----VIPRS 117 S KKRE LY +I +A S + S YID+ I++A L+ I + + P Sbjct: 69 SEKKRESLYPEIIKAAQFSYQTFISPNYIDRKGINRAVLEGILKCTKLINRFTQSKFPLK 128 Query: 118 ALIDGR----SIPEDL---PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 LIDG PE + C F IKGD +SIAAASI+AKV+RDR M KKYP Sbjct: 129 LLIDGNYNFNRYPEWMNLKGCSTF-YIKGDLRIVSIAAASILAKVSRDRYMISVSKKYPI 187 Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 Y FD H GY T H+++I G S IHR +F Sbjct: 188 YRFDQHKGYGTKLHEELILLHGLSDIHRRSF 218 >gi|209966435|ref|YP_002299350.1| ribonucleasehII [Rhodospirillum centenum SW] gi|209959901|gb|ACJ00538.1| ribonucleasehII [Rhodospirillum centenum SW] Length = 218 Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 81/184 (44%), Positives = 115/184 (62%), Gaps = 6/184 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP---FGINDSKKISHKKREELYEKITSSAIIS 82 V G+DE GRG LAGPVV AA++L +P GI+DSK++S +RE L I + A + Sbjct: 22 VCGVDEAGRGPLAGPVVAAAVVLPGGPLPDWCAGIDDSKRLSAARREALCGLIRAQARVG 81 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQV-IPRSALIDGRSIPEDLPCQAF-AVIKGD 140 + A ID NI +AT A+ AVE L +P AL+DG P LPC A++ GD Sbjct: 82 VGIADVAEIDTLNILRATFLAMRRAVEGLGAPLPAVALVDGNQRPP-LPCAIVEAIVDGD 140 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 ++ LSIAAASI+AKVTRDR+M +++P YG++ + GY TA H++ ++ G + HR + Sbjct: 141 ALCLSIAAASIVAKVTRDRIMAELAERHPGYGWERNAGYGTAAHREALRRLGATPEHRRS 200 Query: 201 FRPL 204 F P+ Sbjct: 201 FAPV 204 >gi|297587481|ref|ZP_06946125.1| ribonuclease H [Finegoldia magna ATCC 53516] gi|297574170|gb|EFH92890.1| ribonuclease H [Finegoldia magna ATCC 53516] Length = 207 Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 78/190 (41%), Positives = 107/190 (56%), Gaps = 12/190 (6%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + G+DEVGRG LAGPVV AII+ N I G+ DSKK+S KKR + + I A+ S+ Sbjct: 14 ICGVDEVGRGPLAGPVVTCAIIMPKNCEIIDGVTDSKKLSEKKRIKFKDMILDQALAYSV 73 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALIDGRSIPEDLPCQAFAVI 137 + ID+ NI +A ++ AVE+L+ + P +ID I D+ +F + Sbjct: 74 NFVDQSVIDEINIKQANRLSMKRAVESLKTKDNKFIKPDLIVIDAEKIDTDIKQMSF--V 131 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD I+ ASI+AKV RD M+ YP YGF+ H GY T H+++I E G +H Sbjct: 132 KGDEKLYPISCASIVAKVIRDEYMKDMAVIYPQYGFEKHKGYGTKLHREMILEHGECPLH 191 Query: 198 RLTFRPLRNL 207 R TF LR L Sbjct: 192 RKTF--LRKL 199 >gi|228471979|ref|ZP_04056747.1| ribonuclease HII [Capnocytophaga gingivalis ATCC 33624] gi|228276591|gb|EEK15304.1| ribonuclease HII [Capnocytophaga gingivalis ATCC 33624] Length = 197 Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 71/181 (39%), Positives = 107/181 (59%), Gaps = 9/181 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL + +NDSK+++ K+R L I A+ ++ Sbjct: 11 AGTDEAGRGCLAGPVTAAAVILPEDFYHPLLNDSKQMTEKQRNLLRPIIEEQALSYAVVH 70 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLP--CQAFAVIKGDS 141 S + ID+ NI A+++A++ A++ L + P ++DG +++P CQ +KGD Sbjct: 71 LSPERIDQINILNASIEAMHQALDKLTLTPEFVVVDGNRFKPYKEIPYSCQ----VKGDG 126 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + IAAAS++AK RD M HK+YP Y +D + GYPT +H++ I E G HR TF Sbjct: 127 RFMRIAAASVLAKTYRDAYMETLHKQYPMYHWDKNKGYPTREHREAILEYGACEHHRKTF 186 Query: 202 R 202 + Sbjct: 187 Q 187 >gi|313901979|ref|ZP_07835395.1| Ribonuclease H [Thermaerobacter subterraneus DSM 13965] gi|313467768|gb|EFR63266.1| Ribonuclease H [Thermaerobacter subterraneus DSM 13965] Length = 271 Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 77/177 (43%), Positives = 107/177 (60%), Gaps = 2/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG LAGPVV A+IL G++DSK++ RE+L +I A+ ++ Sbjct: 90 VAGVDEVGRGCLAGPVVAGAVILPAGAHLLGLDDSKRLPPAAREQLAARIRQQAVAWAVG 149 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A+ Q ID NI AT A+ A++ L V+P+ L+DGR P DL A++ GD+ Sbjct: 150 LATPQEIDALNIWHATRLAMRRALDALAVMPQRVLVDGRP-PGDLGYPLDALVDGDARYA 208 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +IAAAS++AKV RD M ++YP YGF H GY TA H++ + GP HR +F Sbjct: 209 AIAAASVVAKVYRDAWMSRLDREYPAYGFAQHKGYATAAHRRALARYGPCPEHRRSF 265 >gi|294828096|ref|NP_712567.2| ribonuclease H II [Leptospira interrogans serovar Lai str. 56601] gi|293385944|gb|AAN49585.2| ribonuclease H II [Leptospira interrogans serovar Lai str. 56601] Length = 231 Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 88/211 (41%), Positives = 110/211 (52%), Gaps = 23/211 (10%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--------IPFGINDSKKI 63 FELE P GIDE GRG AGP+ VA + N+ I G+ DSKK+ Sbjct: 10 FELEEHRFYSESIP-CGIDEAGRGPYAGPLSVALVSFSQNSLTQILEGKILKGLTDSKKL 68 Query: 64 SHKKREELYEKITSSAIISISSA-SHQYIDKHNIHKATLDAIYHAVENLQ-----VIPRS 117 S KKRE LY +I +A S + S YID+ I++A L+ I + + P Sbjct: 69 SEKKRESLYPEIIKAAQFSYQTFISPNYIDRKGINRAVLEGILKCTKLINRFTQSKFPLK 128 Query: 118 ALIDGR----SIPEDL---PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 LIDG PE + C F IKGD +SIAAASI+AKV+RDR M KKYP Sbjct: 129 LLIDGNYNFNRYPEWMNLKDCSTF-YIKGDLRIVSIAAASILAKVSRDRYMISVSKKYPI 187 Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 Y FD H GY T H+++I G S IHR +F Sbjct: 188 YRFDQHKGYGTKLHEELILLHGLSDIHRRSF 218 >gi|282856252|ref|ZP_06265535.1| ribonuclease HII [Pyramidobacter piscolens W5455] gi|282586011|gb|EFB91296.1| ribonuclease HII [Pyramidobacter piscolens W5455] Length = 186 Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 73/181 (40%), Positives = 107/181 (59%), Gaps = 5/181 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS-SAI 80 + G+DE GRG LAGPVV AA++L + G+ DSKK++ +RE+++ ++ + + Sbjct: 3 LVGVDEAGRGPLAGPVVAAAVVLTEAQREDLVGLGLRDSKKMTPPRREKVFARMLELNVV 62 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 +SA + ID+ NI +ATL A+ AVE L + ++DG L A+I GD Sbjct: 63 WRAASAPAERIDRLNILRATLWAMRRAVEKLPLDVDGVIVDGNQEIPGLSVYQQAIIGGD 122 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 I I+AAS++AKV RDR+M + YPDY F H GY T H++ I E GP+ IHR + Sbjct: 123 DIYPQISAASVVAKVLRDRVMTVYDGIYPDYDFARHKGYGTEAHRRAIAELGPTPIHRRS 182 Query: 201 F 201 F Sbjct: 183 F 183 >gi|304383864|ref|ZP_07366321.1| ribonuclease HII [Prevotella marshii DSM 16973] gi|304334942|gb|EFM01215.1| ribonuclease HII [Prevotella marshii DSM 16973] Length = 198 Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 79/179 (44%), Positives = 115/179 (64%), Gaps = 5/179 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG+LAG V AA+IL P+ INDSKK++ ++R L E I + AI +I Sbjct: 13 AGCDEAGRGSLAGSVYAAAVILPPDYRNDAINDSKKLTPRQRYALREVIQTDAIAWAIGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143 A+ + ID+ NI A++ A++ A++ L + P + +IDG +LPCQ ++KGD+ Sbjct: 73 ATAEEIDRINILNASILAMHRALDGLHLRPEAVIIDGNRFQPYRNLPCQT--IVKGDAKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 LSIAAA+I+AK RD M ++YP Y + S+ GYPT +H+Q IK+ G S +HR +FR Sbjct: 131 LSIAAAAILAKTYRDDYMDALAEEYPVYEWHSNKGYPTKRHRQAIKDYGASPLHRQSFR 189 >gi|255530318|ref|YP_003090690.1| ribonuclease HII [Pedobacter heparinus DSM 2366] gi|255343302|gb|ACU02628.1| Ribonuclease H [Pedobacter heparinus DSM 2366] Length = 203 Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 74/178 (41%), Positives = 103/178 (57%), Gaps = 5/178 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL P+ I +NDSK+++H++R+ L I AI +++ Sbjct: 13 AGCDEAGRGCLAGPVFAAAVILPPDFIAGELNDSKQLNHQQRKRLRIIIEKEAIAWAVAE 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143 + ID+ NI A+ A++ A+E L V P+ IDG + D+P ++KGD Sbjct: 73 VDNIEIDQINILNASFLAMHRAIEKLLVKPQYLSIDGNRFKKYPDIPHAC--IVKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 L+IAAASI+AK RD M +YP Y + + GYPT H+ E G S HR TF Sbjct: 131 LNIAAASILAKTHRDEFMERISDEYPHYQWHQNKGYPTVVHRSAALEHGLSPYHRKTF 188 >gi|189502530|ref|YP_001958247.1| hypothetical protein Aasi_1185 [Candidatus Amoebophilus asiaticus 5a2] gi|189497971|gb|ACE06518.1| hypothetical protein Aasi_1185 [Candidatus Amoebophilus asiaticus 5a2] Length = 194 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 80/181 (44%), Positives = 111/181 (61%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DEVGRG LAGPVV AA+IL N +NDSKK+S KR L I AI +I Sbjct: 13 AGCDEVGRGCLAGPVVAAAVILPKNYYHPLLNDSKKLSTAKRILLDSIIKEVAIAWAIGE 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSIS 143 A+H+ ID+ NI A+ A++ A+ L +P+ LIDG+ ++P Q +I GD+ Sbjct: 73 ATHEEIDQINIFNASCLAMHRAISQLGQLPQLLLIDGKYFNPYPNIPHQC--IIDGDAQF 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AK RD M +YPDYG++ +VGYPT H++ I+E G + HR +++ Sbjct: 131 NAIAAASILAKTYRDAYMHQLSIQYPDYGWEKNVGYPTVTHRKAIQELGLTPYHRKSYKL 190 Query: 204 L 204 L Sbjct: 191 L 191 >gi|325281756|ref|YP_004254298.1| Ribonuclease H [Odoribacter splanchnicus DSM 20712] gi|324313565|gb|ADY34118.1| Ribonuclease H [Odoribacter splanchnicus DSM 20712] Length = 199 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 69/179 (38%), Positives = 104/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL N +NDSK++S K+R L I A+ +++S Sbjct: 13 AGCDEAGRGCLAGPVFAAAVILPDNFSDELLNDSKQLSEKQRAGLRPVIEREALAWAVAS 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + IDK NI A++ A++ A++ L+V P ++DG + ++KGD +S Sbjct: 73 VDNHEIDKINILNASILAMHRALDQLKVRPGHIIVDGNRFKKYRDIPHLCIVKGDGKYMS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAAS++AK RD M H +P Y + + GYPT +H++ I++ G + HR +F L Sbjct: 133 IAAASVLAKTHRDEYMENLHALFPVYNWKKNKGYPTQEHRKGIEQAGVTEFHRTSFTLL 191 >gi|116328318|ref|YP_798038.1| ribonuclease H [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331044|ref|YP_800762.1| ribonuclease H [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121062|gb|ABJ79105.1| Ribonuclease H [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124733|gb|ABJ76004.1| Ribonuclease H [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 223 Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 85/211 (40%), Positives = 106/211 (50%), Gaps = 21/211 (9%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--------GINDSKK 62 HFE E P GIDE GRG AGP+ VA + N + G+ DSKK Sbjct: 8 HFEPEEYRFYSESIP-CGIDEAGRGPYAGPLSVALVSFSQNTLHQILEGKLLKGLTDSKK 66 Query: 63 ISHKKREELYEKITSSAIISISS-ASHQYIDKHNIHKATLDAIYHAVENL-----QVIPR 116 +S KKRE LY +I A IS + S YID+ I++A L+ I + +P Sbjct: 67 LSEKKREALYPEILKIAQISCQTFLSPNYIDREGINRAVLEGIRKCAKMAIRGVSSTLPL 126 Query: 117 SALIDGRSIPEDLPCQAFA------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 LIDG P + KGD +SIAAASI+AKV+RDR M KKYPD Sbjct: 127 QLLIDGNYNFNRYPEWNYFKNRSSFYTKGDLRIVSIAAASILAKVSRDRYMTSISKKYPD 186 Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 Y FD H GY T H+++I G S IHR +F Sbjct: 187 YRFDRHKGYGTKLHEELILRYGLSDIHRRSF 217 >gi|319779558|ref|YP_004130471.1| Ribonuclease HII [Taylorella equigenitalis MCE9] gi|317109582|gb|ADU92328.1| Ribonuclease HII [Taylorella equigenitalis MCE9] Length = 212 Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 80/203 (39%), Positives = 115/203 (56%), Gaps = 23/203 (11%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS--I 83 V G+DE GRG LAG V A++L I G+ DSKK+S KKREEL E + A +S + Sbjct: 6 VIGVDEAGRGPLAGDVFAGAVLLGSPEI-VGLTDSKKLSPKKREEL-EVLIKGASVSYFV 63 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRS-------ALIDGRSIPEDLP----- 130 + ++ + ID NI ATL A+ A++ L +P +IDG IP L Sbjct: 64 ACSTVEEIDSLNILNATLLAMNRAIDGVLGALPPKYQSSQIKVIIDGNQIPNPLKREGIF 123 Query: 131 -CQAFAV-----IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 Q F + IKGD ++ +++AASI+AK RDR + H+ P Y F+ H GY TA H Sbjct: 124 DYQGFKIEVKSQIKGDLLTPTVSAASILAKTARDRHILQLHESVPQYKFNEHKGYGTALH 183 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 ++I++ GPS HR +F P+++L Sbjct: 184 LEMIRKYGPSIFHRKSFNPVKSL 206 >gi|292670872|ref|ZP_06604298.1| ribonuclease HII [Selenomonas noxia ATCC 43541] gi|292647493|gb|EFF65465.1| ribonuclease HII [Selenomonas noxia ATCC 43541] Length = 251 Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 91/203 (44%), Positives = 119/203 (58%), Gaps = 4/203 (1%) Query: 8 ERPH--FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 ER H + E E VAG+DE GRG LAGPV VAA++L +NDSKK+SH Sbjct: 46 ERLHAMYTYERAAIEAGHLIVAGVDEAGRGPLAGPVAVAAVVLPMECHLSHLNDSKKLSH 105 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 REEL+ +IT A IS + ID+ NI +AT +Y A+ L P LID Sbjct: 106 AVREELFAQITEQAFSYHISLIDAETIDRMNILQATRMGMYEAIAALTPAPDEVLIDAVE 165 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P+ L + ++IKGD+ S SIAAASI+AKVTRD LM +YP YGF H GY T +H Sbjct: 166 LPK-LSMSSKSIIKGDAKSASIAAASILAKVTRDHLMEQYDTEYPHYGFAKHKGYGTQEH 224 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 I++ G IHR +F P+R++ Sbjct: 225 IDAIRKYGVCPIHRKSFEPIRSM 247 >gi|150025268|ref|YP_001296094.1| ribonuclease HII [Flavobacterium psychrophilum JIP02/86] gi|189043597|sp|A6GYW0|RNH2_FLAPJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|149771809|emb|CAL43283.1| Ribonuclease HII [Flavobacterium psychrophilum JIP02/86] Length = 219 Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 78/206 (37%), Positives = 109/206 (52%), Gaps = 25/206 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL N +NDSK++S K RE+L I + AI S++ Sbjct: 13 AGTDEAGRGCLAGPVTAAAVILPENFESKILNDSKQLSEKTREQLKPIIEALAISFSVTH 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR---------------------- 123 ID+ NI A+L A+ V L P + DG Sbjct: 73 LDPLIIDEINILNASLKAMQECVLQLNPTPLYIIADGNRPLLSKNSFKKCSGKIFTNREI 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 I + +P + +IKGDS LSIAAAS++AK RD M H+++P Y + + GYPT + Sbjct: 133 EILQSIPSSS--IIKGDSKYLSIAAASVLAKTYRDEYMNTIHEEFPMYNWKKNKGYPTKE 190 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLSV 209 H++ I++ G + HR+TFR L +V Sbjct: 191 HREAIRKYGVTKYHRMTFRLLPEQTV 216 >gi|261417089|ref|YP_003250772.1| Ribonuclease H [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373545|gb|ACX76290.1| Ribonuclease H [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326679|gb|ADL25880.1| ribonuclease HII [Fibrobacter succinogenes subsp. succinogenes S85] Length = 247 Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 82/220 (37%), Positives = 112/220 (50%), Gaps = 40/220 (18%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS-A 79 +N V GIDEVGRG LAGPVV A +L + +NDSKK+S KRE +++ + + A Sbjct: 28 ENSAIVVGIDEVGRGPLAGPVVACAAVLKSPDALLTLNDSKKLSRPKREAMFDAVKDACA 87 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQV-------------------------I 114 +I+SAS + ID+ NI +A A+ A++ L + Sbjct: 88 CYAIASASVEEIDEINILEADFLAMRRALQALGFPGLNESAPEIPIEVKGSLNDVMPDSV 147 Query: 115 PRSAL-------IDG----RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163 P SAL +DG R +P + ++KGD SI+AASI+AKV RDR M Sbjct: 148 PASALSSNVLIAVDGNLKIRGVPAE---NQMPIVKGDGRIASISAASILAKVFRDRYMDK 204 Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + YP YGFD H GY T H I+ +G S HR +F P Sbjct: 205 LEELYPGYGFDKHAGYGTKAHLDAIRRQGFSPAHRKSFHP 244 >gi|38234094|ref|NP_939861.1| ribonuclease HII [Corynebacterium diphtheriae NCTC 13129] gi|73917606|sp|Q6NGJ8|RNH2_CORDI RecName: Full=Ribonuclease HII; Short=RNase HII gi|38200356|emb|CAE50042.1| ribonuclease HII [Corynebacterium diphtheriae] Length = 229 Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 73/194 (37%), Positives = 103/194 (53%), Gaps = 10/194 (5%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREEL 71 E + + + PVAG+DE GRG+ GP+ +AA I+ I + DSKK+S KR EL Sbjct: 24 FEVTLDKHGLGPVAGVDEAGRGSCCGPITIAACIMPQRPIAQLQALTDSKKLSAAKRAEL 83 Query: 72 YEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 Y I A II IS+A ID+ I A + + A+E L V P L D +P Sbjct: 84 YPLIKKYALAWSIIHISAAE---IDREGIQHANIFGMRRAIEKLDVAPGYVLTDAMKVP- 139 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L C + +I GD+ IAAAS++AK +RD +M KYP+YG + H GY T H Sbjct: 140 GLRCPSLPIIGGDAAVRCIAAASVLAKHSRDLIMDDLGGKYPEYGLEDHKGYGTKSHMDA 199 Query: 188 IKEKGPSCIHRLTF 201 ++ G + HR ++ Sbjct: 200 VRHHGATPEHRYSY 213 >gi|85373281|ref|YP_457343.1| ribonuclease HII [Erythrobacter litoralis HTCC2594] gi|122545127|sp|Q2NCP5|RNH2_ERYLH RecName: Full=Ribonuclease HII; Short=RNase HII gi|84786364|gb|ABC62546.1| ribonuclease HII [Erythrobacter litoralis HTCC2594] Length = 212 Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 79/187 (42%), Positives = 112/187 (59%), Gaps = 9/187 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 V G+DE GRG LAGPVV AA++L + P G++DSKK++ K+R L E I + + Sbjct: 20 VFGVDEAGRGPLAGPVVAAAVVLG-DAYPKGLDDSKKLTAKRRAVLDEDIRKTCGWGVGV 78 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVI----PRSALIDGRSIPE---DL-PCQAFAVI 137 + ID NI AT+ A+ AV+ L P LIDG P DL +A A+I Sbjct: 79 VDVEEIDTLNILGATMRAMSLAVQGLAAKLGGDPDMVLIDGNLTPHGRCDLWQWEAQAII 138 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD I +I+AASI+AK RDR+M A + YP+YG+ S+ GY TA+H + ++ GP+ +H Sbjct: 139 GGDGIEPAISAASIVAKEWRDRIMTEAAQDYPEYGWLSNKGYGTAQHLEALRLHGPTPLH 198 Query: 198 RLTFRPL 204 R +F P+ Sbjct: 199 RRSFAPV 205 >gi|325474109|gb|EGC77297.1| ribonuclease HII [Treponema denticola F0402] Length = 198 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/193 (40%), Positives = 107/193 (55%), Gaps = 18/193 (9%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-NDSKKISHKKREELYEKITS--SAIIS 82 + GIDE GRG LAGPV AA+IL P+ F I DSKK++ KKREE+ + I + + + S Sbjct: 2 LCGIDEAGRGPLAGPVTAAAVIL-PSRFDFSILKDSKKLTEKKREEVRKTIYADPNVLWS 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENL-------------QVIPRSALIDGRSIPEDL 129 I AS+ ID+ NI +AT A+ A E L + I ++DG IP Sbjct: 61 IGWASNYEIDEINILQATFLAMERAYEGLYLKLQEFCKLNNDKFIEPDIIVDGNFIPNIK 120 Query: 130 PCQAF-AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 C + A++K D + AASI+AK RDR+M YP+YG++ H GY T KH + I Sbjct: 121 NCSSIKALVKADDSVYEVMAASILAKTARDRMMIRYSWLYPEYGYEKHKGYGTKKHIEAI 180 Query: 189 KEKGPSCIHRLTF 201 + G S I R +F Sbjct: 181 RFNGYSPIQRRSF 193 >gi|289523589|ref|ZP_06440443.1| ribonuclease HII [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503281|gb|EFD24445.1| ribonuclease HII [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 193 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/182 (41%), Positives = 104/182 (57%), Gaps = 5/182 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII 81 V G+DE GRG LAGPVV AA+ + G+ DSK +S K+REE++ + I Sbjct: 3 VVGVDEAGRGPLAGPVVAAAVAATREKMSLLKSVGVTDSKALSSKRREEIFLLLRRYGFI 62 Query: 82 SISSASH-QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 + A++ +ID+ NI +ATL A+ AV +L + P ++DG LP A+ K D Sbjct: 63 YRAQAANPWFIDRANILQATLWAMEKAVSSLSLSPDIVIVDGNQKIPGLPFPQKALPKAD 122 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 L + AASI+AKV RDR+M K YP YGF H GYPT +H+ + G S IHR T Sbjct: 123 KNVLVVGAASIVAKVIRDRVMCAYDKLYPGYGFAVHKGYPTKEHRIALALMGASPIHRKT 182 Query: 201 FR 202 F+ Sbjct: 183 FK 184 >gi|288573052|ref|ZP_06391409.1| Ribonuclease H [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568793|gb|EFC90350.1| Ribonuclease H [Dethiosulfovibrio peptidovorans DSM 11002] Length = 194 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/181 (40%), Positives = 103/181 (56%), Gaps = 6/181 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII- 81 AG+DE GRG +AGPVV AA IL + G+ DSKK++ +RE+++ + +I Sbjct: 8 AGVDEAGRGPMAGPVVAAAAILTEEQSERLVSAGLRDSKKMTPLRREKVFSLMGELGVIW 67 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENL-QVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 + +AS + IDK NI +ATL A+ +VE L + L+DG DL GD Sbjct: 68 AAQAASVERIDKINILRATLWAMRRSVERLPSRLFDGVLVDGDKEIPDLIWPQRVCPHGD 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + I+AAS++AKV RDR M + YP YGF SH GY T H+ ++ GPS IHR + Sbjct: 128 DVYPQISAASVVAKVLRDRAMVALDRLYPAYGFASHKGYGTKAHRNALEAMGPSPIHRKS 187 Query: 201 F 201 F Sbjct: 188 F 188 >gi|323702665|ref|ZP_08114326.1| Ribonuclease H [Desulfotomaculum nigrificans DSM 574] gi|323532328|gb|EGB22206.1| Ribonuclease H [Desulfotomaculum nigrificans DSM 574] Length = 214 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/197 (41%), Positives = 114/197 (57%), Gaps = 9/197 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ELE + ++ + VA DEVGRG L G VV AA++L + G++DSKK++ KKRE L Sbjct: 4 LELEQKLWQQGIKLVAFCDEVGRGPLLGSVVAAAVVLPVGLLIEGVDDSKKLTPKKRETL 63 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL------QVIPRSALIDGRS 124 I A+ + I + ID+ NI +A+ A+ AV NL +V P LID S Sbjct: 64 CRYIYDQALAVGIGEVDNNLIDQINIRQASRLAMKQAVMNLRSKEGHKVTPDYLLIDAES 123 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 I D+P Q+ +I GD++S IAAASI+AKV RD + + YPDYG SH GY T H Sbjct: 124 IDLDIPQQS--IIHGDAVSHGIAAASIVAKVFRDSMCMEWDQMYPDYGIASHKGYATKAH 181 Query: 185 QQVIKEKGPSCIHRLTF 201 + + + G + +HR TF Sbjct: 182 IEALLKLGATPLHRRTF 198 >gi|307565732|ref|ZP_07628201.1| ribonuclease HII [Prevotella amnii CRIS 21A-A] gi|307345558|gb|EFN90926.1| ribonuclease HII [Prevotella amnii CRIS 21A-A] Length = 200 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 103/179 (57%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL +NDSKK+S K R L + I +A+ +I Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPKTYCNEHLNDSKKLSSKTRYALRKDIELNAVAWAIGK 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI A++ A++ A++ L + P + +IDG +IKGD LS Sbjct: 73 VTPEEIDRINILNASILAMHRALDQLIIRPEAIIIDGNRFKPYHNIPYTTIIKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M KKYP Y ++ ++GYPT H+Q I + G + HR +F+ L Sbjct: 133 IAAASILAKTYRDDYMCTLAKKYPQYEWEHNMGYPTKAHRQAIAKYGITPYHRKSFKLL 191 >gi|86134237|ref|ZP_01052819.1| Ribonuclease HII [Polaribacter sp. MED152] gi|85821100|gb|EAQ42247.1| Ribonuclease HII [Polaribacter sp. MED152] Length = 199 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 68/179 (37%), Positives = 105/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85 AG DE GRG L+GPVV AA+IL N +NDSK++S K R+ L I +AI ++S Sbjct: 13 AGTDEAGRGCLSGPVVAAAVILPKNFSHPLLNDSKQLSEKNRQILKPIIEENAIAHAVSF 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + +DK N+ +A++ ++ A+E L V P ++DG ++KGD+ LS Sbjct: 73 VYQEEVDKINVLQASITGMHRAIEALDVTPEFIIVDGNKFRNYKEIPHETIVKGDAKFLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAAS++AK RD M H+++ Y + + GYPT +H+ I++ G + HR +F+ L Sbjct: 133 IAAASVLAKTYRDDYMEKIHQEFSMYNWQKNKGYPTKEHRDAIRKFGATIHHRKSFKLL 191 >gi|310779317|ref|YP_003967650.1| Ribonuclease H [Ilyobacter polytropus DSM 2926] gi|309748640|gb|ADO83302.1| Ribonuclease H [Ilyobacter polytropus DSM 2926] Length = 203 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/180 (43%), Positives = 108/180 (60%), Gaps = 4/180 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84 + GIDE GRG LAGPVV AA+ + F INDSKK+S KKRE L++ I + + + Sbjct: 14 IIGIDEAGRGPLAGPVVAAAVKIKKYVKEFDMINDSKKLSEKKRELLFDVIIENCHVGVG 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 + + ID +NI AT + A+E++ + + L+DG + + +IKGD Sbjct: 74 VVNEKDIDNYNILNATFMGMIKAIEDISEEGISFENVLVDGNHKIREYNNRQTPIIKGDG 133 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SL+IAAASIIAKVTRDR+M +KYP+YGF H GY T +H++ I + G HR TF Sbjct: 134 KSLAIAAASIIAKVTRDRIMVKYDEKYPEYGFAKHKGYGTKQHREAILKNGACQCHRKTF 193 >gi|167750814|ref|ZP_02422941.1| hypothetical protein EUBSIR_01796 [Eubacterium siraeum DSM 15702] gi|167656249|gb|EDS00379.1| hypothetical protein EUBSIR_01796 [Eubacterium siraeum DSM 15702] Length = 219 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 88/178 (49%), Positives = 114/178 (64%), Gaps = 4/178 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDE GRG LAG V AA+IL + I GINDSKK++ KKRE L++ I A+ I+ Sbjct: 32 ICGIDEAGRGPLAGDVYAAAVILPDDIIIDGINDSKKLTEKKREALFDIIREKAVSYCIA 91 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKGDSIS 143 +AS + ID NI A + A+ A + L V P +ALIDG P D+P AV+KGD+ S Sbjct: 92 TASVEEIDSMNILNAAMLAMKRAYDGLDVKPDTALIDGNKTPGLDIP--ETAVVKGDATS 149 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASI+AKV RDR M+ +KYP Y F+ H GY T H +++ + G S IHR TF Sbjct: 150 ASIAAASILAKVARDRYMKELAEKYPQYMFEKHKGYGTKLHYEMLDKYGASDIHRKTF 207 >gi|42527055|ref|NP_972153.1| ribonuclease HII [Treponema denticola ATCC 35405] gi|81412195|sp|Q73MG1|RNH2_TREDE RecName: Full=Ribonuclease HII; Short=RNase HII gi|41817479|gb|AAS12064.1| ribonuclease HII [Treponema denticola ATCC 35405] Length = 198 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 18/193 (9%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-NDSKKISHKKREELYEKITS--SAIIS 82 + GIDE GRG LAGPV AA+IL P++ F I DSKK++ KKREE+ + I + + I + Sbjct: 2 LCGIDEAGRGPLAGPVTAAAVIL-PSSFDFSILKDSKKLTEKKREEVRKTIYADPNVIWA 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENL-------------QVIPRSALIDGRSIPEDL 129 I AS+ ID+ NI +AT A+ A E L + I ++DG IP Sbjct: 61 IGWASNYEIDEINILQATFLAMERAYEGLYLKLQEFCKLNNDKFIEPDIIVDGNFIPNIK 120 Query: 130 PCQAF-AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 C + A++K D + AASI+AK RDR+M YP+YG++ H GY T KH + I Sbjct: 121 NCSSIKALVKADDSVYEVMAASILAKTARDRMMIRYSWIYPEYGYEKHKGYGTKKHIEAI 180 Query: 189 KEKGPSCIHRLTF 201 + G S I R +F Sbjct: 181 RFNGYSPIQRRSF 193 >gi|283481616|emb|CAZ69732.1| putative ribonuclease [Emiliania huxleyi virus 99B1] Length = 209 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/192 (41%), Positives = 109/192 (56%), Gaps = 14/192 (7%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREELYEKIT-SSAIIS 82 V G+DE GRG LAGPVV A + P N P I DSKK++ K+R E +E +T +S I Sbjct: 22 VVGVDEAGRGCLAGPVVAGACFV-PENEPIHPLIKDSKKMTEKQRMEAFEYLTLNSNIKC 80 Query: 83 ISSASHQY-IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL----PCQAFAVI 137 +S Y ID NI KAT+ A+ + + + AL+DG P+ Q F I Sbjct: 81 YASFIEPYEIDDINILKATMKAMGNVIN--ESGANLALVDGDKTPKMFVDTSEIQTF--I 136 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCI 196 KGDS SI+ AS+IAKV+RD M K YP+YGF +H+GY T H I++ GP + Sbjct: 137 KGDSRMYSISCASVIAKVSRDLYMEELSKTYPEYGFSNHMGYGTQAHMAAIEKNGPIPFV 196 Query: 197 HRLTFRPLRNLS 208 HR ++ P++ + Sbjct: 197 HRYSYAPIKKFT 208 >gi|218437055|ref|YP_002375384.1| ribonuclease H [Cyanothece sp. PCC 7424] gi|218169783|gb|ACK68516.1| Ribonuclease H [Cyanothece sp. PCC 7424] Length = 212 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/183 (44%), Positives = 116/183 (63%), Gaps = 5/183 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 +AG+DEVGRGAL GPVV A+++ + I G+ DSK++S K+R EL ++I AI Sbjct: 24 IAGVDEVGRGALFGPVVAGAVVVPVSAIDQLTQLGVKDSKQLSPKRRVELAQQIKGLAID 83 Query: 82 S-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 S +S A+ ID+ NI +A+L A+Y AV L++ P L+DGR +L + +IKGD Sbjct: 84 SHVSFATVGEIDQINILQASLKAMYRAVVKLKINPAVCLVDGRHPLPNLEIRQENIIKGD 143 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S IAAASI+AKV RD L+ +KYP Y ++ GY T +H++ + + G S HRL+ Sbjct: 144 ERSPVIAAASILAKVWRDNLIVRLAQKYPQYDLIANKGYGTLRHREALLKYGASPQHRLS 203 Query: 201 FRP 203 FRP Sbjct: 204 FRP 206 >gi|325856482|ref|ZP_08172171.1| ribonuclease HII [Prevotella denticola CRIS 18C-A] gi|325483451|gb|EGC86424.1| ribonuclease HII [Prevotella denticola CRIS 18C-A] Length = 200 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/179 (38%), Positives = 103/179 (57%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG L G V AA+IL P ++DSKK++ +KR L + I A+ ++ Sbjct: 13 AGCDEAGRGCLVGSVYAAAVILPPGYQNSLLDDSKKLTARKRYALRDTIEHDAVAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI A+ A++ A++ L+V P + ++DG +IKGD LS Sbjct: 73 VTPEEIDRINILNASFLAMHRALDQLKVRPEAVIVDGNRFTPYRKLPFATIIKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M ++YP Y + ++GYPT KH+Q I+E G + HR ++ L Sbjct: 133 IAAASILAKTYRDDYMCSLAEEYPQYDWQKNMGYPTKKHRQAIREYGITPYHRRSYNLL 191 >gi|291514820|emb|CBK64030.1| RNase HII [Alistipes shahii WAL 8301] Length = 199 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 99/178 (55%), Gaps = 1/178 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 P AG DE GRG LAGPV AA++L P+ +NDSK+++ + RE+L I A+ ++ Sbjct: 11 PEAGCDEAGRGCLAGPVFAAAVMLPPDFHDPLLNDSKQMTERNREKLRAVIEREAVAWAV 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S ID+ NI A+ + + AV L P IDG L ++KGD Sbjct: 71 EAVSAARIDEINILNASFEGMSLAVARLDPAPAFLAIDGNRFRTRLEIPWRCIVKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAAS++AK RD M +++P YG+ + GYPT +H+ I+E G + HRLTF Sbjct: 131 ADIAAASVLAKTHRDEYMLCIAEEFPQYGWAKNKGYPTREHRLAIREHGLTPHHRLTF 188 >gi|83594539|ref|YP_428291.1| ribonuclease HII [Rhodospirillum rubrum ATCC 11170] gi|97189243|sp|Q2RPE1|RNH2_RHORT RecName: Full=Ribonuclease HII; Short=RNase HII gi|83577453|gb|ABC24004.1| Ribonuclease H [Rhodospirillum rubrum ATCC 11170] Length = 218 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/187 (41%), Positives = 109/187 (58%), Gaps = 7/187 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS--SA 79 VAG+DEVGRG LAGPVV AA+++D + ++DSKK+S R+ L + + Sbjct: 14 VAGVDEVGRGPLAGPVVAAAVVIDAGRADPALLARLDDSKKLSAALRQRLATALLADPGV 73 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 + + AS ID+ NI +AT A+ A+ L AL+DG +P LPC AV++G Sbjct: 74 EVGLGEASVAEIDRINILQATFLAMGRALAKLAPPVDLALVDGNRLPP-LPCPGQAVVRG 132 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D +SLSIAAASI+AKV RD M + P YG++ + GY TA+H + G + HR Sbjct: 133 DGLSLSIAAASIVAKVHRDAAMATLAQALPGYGWERNAGYGTAEHLAALDRLGATPHHRA 192 Query: 200 TFRPLRN 206 +F P+R Sbjct: 193 SFAPVRE 199 >gi|289449974|ref|YP_003475451.1| ribonuclease HII [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184521|gb|ADC90946.1| ribonuclease HII [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 228 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/191 (41%), Positives = 112/191 (58%), Gaps = 2/191 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E ++ +AG DE GRG +AGP+ AA+++DP +G+NDSKK+S K+REEL Sbjct: 35 LKFEEQAAQQGFTCIAGTDEAGRGPVAGPIFAAAVVIDPRRPLYGVNDSKKLSPKRREEL 94 Query: 72 YEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I +A SI+ + + ID+ I A + AV + + L+D + +D Sbjct: 95 FNIICERAAAYSIAMVTAKVIDQIGIGPANDLVLKQAVGRMSIKADYVLVDYFKL-KDYA 153 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+ KGDS+S SIAAASI+AKV+RDR M K YP YGF +H GY TA H+Q IKE Sbjct: 154 IPYLAITKGDSLSASIAAASILAKVSRDRYMVQQDKIYPQYGFAAHKGYGTAAHRQAIKE 213 Query: 191 KGPSCIHRLTF 201 G HR +F Sbjct: 214 YGLCPEHRRSF 224 >gi|313773607|gb|EFS39573.1| ribonuclease HII [Propionibacterium acnes HL074PA1] Length = 204 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/195 (37%), Positives = 103/195 (52%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L+ Sbjct: 4 ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 63 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A+ +S D+ + +A + + AV L V P L DG + + L Sbjct: 64 NVIMDKALAVSWVGVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 122 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + KGDS+ +AA+ + A+V RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 123 PDLGMWKGDSVCACVAASPLAAQVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 182 Query: 192 GPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 183 GPSRQHRMSYANVRR 197 >gi|150010125|ref|YP_001304868.1| ribonuclease HII [Parabacteroides distasonis ATCC 8503] gi|255012614|ref|ZP_05284740.1| ribonuclease HII [Bacteroides sp. 2_1_7] gi|256838948|ref|ZP_05544458.1| ribonuclease HII [Parabacteroides sp. D13] gi|298374495|ref|ZP_06984453.1| ribonuclease HII [Bacteroides sp. 3_1_19] gi|301308175|ref|ZP_07214129.1| ribonuclease HII [Bacteroides sp. 20_3] gi|166226634|sp|A6LHT2|RNH2_PARD8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|149938549|gb|ABR45246.1| ribonuclease HII [Parabacteroides distasonis ATCC 8503] gi|256739867|gb|EEU53191.1| ribonuclease HII [Parabacteroides sp. D13] gi|298268863|gb|EFI10518.1| ribonuclease HII [Bacteroides sp. 3_1_19] gi|300833645|gb|EFK64261.1| ribonuclease HII [Bacteroides sp. 20_3] Length = 199 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/181 (44%), Positives = 105/181 (58%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK++S KKR +L I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVFAAAVILPEDFKNEDLNDSKQLSEKKRYKLRPVIEREAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIP-EDLPCQAFAVIKGDSIS 143 S + IDK NI KA+ A++ A+E L+V P LIDG R P D+P V+KGD Sbjct: 73 VSPEEIDKINILKASFLAMHRAIEQLKVRPEHLLIDGNRFTPYPDIPHTT--VVKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAASI+AK RD M +YP Y + + GYPT H++ I+ G + HR TF Sbjct: 131 LSIAAASILAKTYRDDYMNELALEYPAYHWLDNKGYPTKVHREAIRTHGITPYHRKTFTL 190 Query: 204 L 204 L Sbjct: 191 L 191 >gi|255603855|ref|XP_002538125.1| ribonuclease hii, putative [Ricinus communis] gi|223513694|gb|EEF24259.1| ribonuclease hii, putative [Ricinus communis] Length = 168 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/168 (44%), Positives = 100/168 (59%), Gaps = 8/168 (4%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII- 81 M + GIDE GRG LAG V AA+IL+P G+ DSKK+S KR+ L +I + A+ Sbjct: 1 MQRLCGIDEAGRGPLAGAVYAAAVILNPERPIAGLADSKKLSEAKRDALAIEIKAHALAW 60 Query: 82 SISSASHQYIDKHNIHKATLDAIYHA----VENLQVIPRSALIDGRSIPE-DLPCQAFAV 136 I+S S Q ID+ NI +A+L A+ A VE + +DG P+ +LPC+A + Sbjct: 61 GIASVSAQEIDEINILQASLLAMQRAYQAMVEQFGLHATLIQVDGNRCPKFELPCEA--I 118 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +KGDS I+AASI+AK RD + + +YP YGF H GYPTA H Sbjct: 119 VKGDSKVAEISAASILAKTARDASLLVLDAEYPQYGFAQHKGYPTALH 166 >gi|157164148|ref|YP_001467724.1| ribonuclease HII [Campylobacter concisus 13826] gi|189043572|sp|A7ZG16|RNH2_CAMC1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|112800307|gb|EAT97651.1| ribonuclease HII [Campylobacter concisus 13826] Length = 184 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/182 (41%), Positives = 104/182 (57%), Gaps = 13/182 (7%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M + GIDE GRGALAGP+ VAA +L N+ G+NDSKK++ K+REEL++KIT S+ Sbjct: 1 MAKICGIDEAGRGALAGPLSVAACVL--NSEISGLNDSKKLTAKRREELFKKITKSSNFL 58 Query: 83 ISSASHQYIDKHNIHKATLDAI--YHA-VENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 I+ S+ ID+ + + A+ + A E+ ++I L G I +IK Sbjct: 59 IAYFSNAQIDELGLSECLRRALKLFKAHFESFEIIYDGNLDYGVGIT--------TMIKA 110 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D ++AASI+AKV+RDRLM K YP YGF H GY T H I + G S HR Sbjct: 111 DGKVAGVSAASILAKVSRDRLMNGWDKFYPAYGFAGHKGYGTKSHLDAIAKFGYSDFHRK 170 Query: 200 TF 201 +F Sbjct: 171 SF 172 >gi|291299696|ref|YP_003510974.1| ribonuclease H [Stackebrandtia nassauensis DSM 44728] gi|290568916|gb|ADD41881.1| Ribonuclease H [Stackebrandtia nassauensis DSM 44728] Length = 211 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/194 (38%), Positives = 110/194 (56%), Gaps = 6/194 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP---FGINDSKKISHKKR 68 + LE +R + VAG DE GRGA AGP+VVAA IL P+ G+ DSK ++ + R Sbjct: 2 YVLENALRRRGFTLVAGADEAGRGACAGPLVVAAAIL-PDGARGQIAGLTDSKLLTERAR 60 Query: 69 EELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E++Y ++ A+ +I S +D+ + + L + A+ L +P AL DG +P Sbjct: 61 EDIYAQVVDRAVAHAIVVISPAEVDRLGVGASNLSGMRRALARLDPMPAYALTDGFPVP- 119 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP V KGD ++ +AAAS++AKVTRDR+M + +P YGF H GY TA H Sbjct: 120 GLPVPGLGVWKGDRVAACVAAASVLAKVTRDRIMTELEQNHPGYGFAEHKGYGTAAHTHA 179 Query: 188 IKEKGPSCIHRLTF 201 ++ GP HRL++ Sbjct: 180 LRTLGPCPQHRLSY 193 >gi|283768287|ref|ZP_06341199.1| ribonuclease HII [Bulleidia extructa W1219] gi|283104679|gb|EFC06051.1| ribonuclease HII [Bulleidia extructa W1219] Length = 200 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/193 (38%), Positives = 113/193 (58%), Gaps = 9/193 (4%) Query: 20 EKNMW----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 EK W + GIDE GRG LAG + VA +I I DSK IS KKRE L+++I Sbjct: 9 EKKAWFSSKRLVGIDEAGRGPLAGSLFVAGVIFPIGYENEEIYDSKAISEKKREHLFKQI 68 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 AI I + ID+ NI++AT +A+ +E Q P ++ ++P +L + Sbjct: 69 QQDAIWFQIIEVPVEVIDEKNIYQATKEAM---LEIAQKAPCEVVLTD-AMPLNLDKEVH 124 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 ++KGD S+SIAAASI+AKV+RD +M +++P YG + GYPT +H++ +K G + Sbjct: 125 DLVKGDQKSISIAAASILAKVSRDHVMVELDRQFPGYGLAKNKGYPTKEHREALKALGIT 184 Query: 195 CIHRLTFRPLRNL 207 IHR ++ P++ + Sbjct: 185 KIHRRSYGPVKKI 197 >gi|255025707|ref|ZP_05297693.1| ribonuclease HII [Listeria monocytogenes FSL J2-003] gi|255028970|ref|ZP_05300921.1| ribonuclease HII [Listeria monocytogenes LO28] Length = 233 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/157 (50%), Positives = 105/157 (66%), Gaps = 3/157 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ L+EKI AI I + Sbjct: 73 IAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALFEKIKKEAIAIGVG 132 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 H ID+ NI++AT A+ A+ L P LID ++P ++IKGD+ S+ Sbjct: 133 IIEHDVIDQVNIYEATKLAMCEALNQLTPEPDFVLID--AMPLRYTEAELSLIKGDTKSI 190 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 SIAAASIIAKVTRDRLM++ +KYP Y F +++GY T Sbjct: 191 SIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGT 227 >gi|300771702|ref|ZP_07081577.1| ribonuclease H [Sphingobacterium spiritivorum ATCC 33861] gi|300761691|gb|EFK58512.1| ribonuclease H [Sphingobacterium spiritivorum ATCC 33861] Length = 198 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/177 (41%), Positives = 98/177 (55%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+I + +NDSKK+S KKR L I A+ +++S Sbjct: 13 AGCDEAGRGCLAGPVFAAAVIFPKDYHHDLLNDSKKLSEKKRMALRPIIEQEALAFAVAS 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NIH A+ A++ A++ LQV ++DG +IKGD LS Sbjct: 73 VSAEEIDKINIHNASYLAMHRALDQLQVKAEYIIVDGNRFIPYPEVSHTCIIKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD M +P Y + + GYPT KH+ + G + HR TFR Sbjct: 133 IAAASILAKTYRDEYMESIACDFPAYDWLQNKGYPTVKHRNAVLAYGLTPHHRKTFR 189 >gi|269125835|ref|YP_003299205.1| Ribonuclease H [Thermomonospora curvata DSM 43183] gi|268310793|gb|ACY97167.1| Ribonuclease H [Thermomonospora curvata DSM 43183] Length = 250 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/211 (34%), Positives = 113/211 (53%), Gaps = 10/211 (4%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP---------FGI 57 P R E+E +RE +AG+DEVGRGA AGPVVV A I P P + Sbjct: 18 PRRAGDEIERRLREAGAVRIAGVDEVGRGAWAGPVVVCAAIAGPGAPPSLPGRGGGTVHL 77 Query: 58 NDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116 DSK ++ +RE E + + ++ +A ID+ + +A A A++ L P Sbjct: 78 TDSKLLTRAQREAFAEILPAWLEAHALGAAEPAEIDRVGMTEALRRAAVRALQALPHRPD 137 Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + ++DG+ P + + D S+S+AAAS++AKV RDRLM +++P YGF Sbjct: 138 AVILDGKHDVPGAPWRVHCQVGADRRSVSVAAASVLAKVHRDRLMARLEEEFPGYGFADS 197 Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 GYP+ H++ ++E GP+ HRL++ L +L Sbjct: 198 AGYPSPAHRRALQEHGPTPHHRLSWSYLDDL 228 >gi|288928610|ref|ZP_06422456.1| ribonuclease HII [Prevotella sp. oral taxon 317 str. F0108] gi|288329594|gb|EFC68179.1| ribonuclease HII [Prevotella sp. oral taxon 317 str. F0108] Length = 202 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 70/184 (38%), Positives = 110/184 (59%), Gaps = 5/184 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSKK++ K+R L +I + A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVFAAAVILPVDYENALLNDSKKLTEKQRYALRTQIETDALAWAVGE 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143 + IDK NI A++ A++ A++ L++ P++ ++DG LP + ++KGD+ Sbjct: 73 VTADEIDKINILNASILAMHRALDGLKLRPQAVIVDGNRFKPYGTLPHET--IVKGDAKF 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAAS++AK RD M ++P Y +D + GYPT H+ I+E G S HR TF+ Sbjct: 131 LSIAAASVLAKTYRDDYMNSLALQHPAYQWDVNKGYPTKAHRAAIEEHGISPFHRKTFKG 190 Query: 204 LRNL 207 ++ + Sbjct: 191 VKEM 194 >gi|256784763|ref|ZP_05523194.1| ribonuclease HII [Streptomyces lividans TK24] gi|289768650|ref|ZP_06528028.1| ribonuclease HII [Streptomyces lividans TK24] gi|289698849|gb|EFD66278.1| ribonuclease HII [Streptomyces lividans TK24] Length = 233 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 71/183 (38%), Positives = 105/183 (57%), Gaps = 1/183 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL-YEKITSSAIISIS 84 +AG+DEVGRGA AGPV V A I P G+ DSK ++ K+R EL E T ++ Sbjct: 23 IAGVDEVGRGAWAGPVTVCAAITGLRRPPVGLTDSKLLTIKRRTELEVELRTWVTSYALG 82 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID + A A A+E L V P + ++DG+ P + VIKGD + Sbjct: 83 HASPEEIDAMGMTAALRLAAVRALETLPVRPDAVILDGKHDYLGAPWRVRTVIKGDQSCI 142 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 ++AAAS++AKV RD++M + D+GF + GYP+ H+ ++E+GP+ HRL++ L Sbjct: 143 AVAAASVLAKVQRDKMMAELGVDHADFGFADNAGYPSPVHKAALEERGPTPHHRLSWAYL 202 Query: 205 RNL 207 L Sbjct: 203 DAL 205 >gi|188994631|ref|YP_001928883.1| ribonuclease HII [Porphyromonas gingivalis ATCC 33277] gi|238691470|sp|B2RIU1|RNH2_PORG3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|188594311|dbj|BAG33286.1| putative ribonuclease HII [Porphyromonas gingivalis ATCC 33277] Length = 201 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/179 (43%), Positives = 102/179 (56%), Gaps = 5/179 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRG LAGPV AA+IL + +NDSK++S K+R L I S AI I Sbjct: 14 CGCDEAGRGCLAGPVYAAAVILPADFSHPLLNDSKQLSEKQRYTLRPVIESEAIGWGIGI 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143 S Q ID+ NI +A+ A++ A+E L P LIDG E +P ++ GD+ Sbjct: 74 VSPQEIDEINILRASFLAMHRAIEQLPFRPERLLIDGNRFDPFEQIPHHC--IVGGDARY 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SIAAASI+AK RD M +K +P YG++ + GYP+ H+ I+ G S HRLTFR Sbjct: 132 RSIAAASILAKTYRDDSMLRLNKDFPMYGWERNKGYPSPAHKSAIRRFGVSPHHRLTFR 190 >gi|305666398|ref|YP_003862685.1| ribonuclease HII [Maribacter sp. HTCC2170] gi|88708390|gb|EAR00627.1| ribonuclease HII [Maribacter sp. HTCC2170] Length = 198 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 71/180 (39%), Positives = 106/180 (58%), Gaps = 5/180 (2%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSA 86 G DE GRG LAGPV AA+IL + +NDSK++S KR L I SA+ ++ Sbjct: 13 GTDEAGRGCLAGPVTAAALILPKDFKNVMLNDSKQLSENKRTILKPIIEQSAVCFGVAHI 72 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSISL 144 + IDK NI A++ A++ A++ L + ++DG D+P + +IKGDS + Sbjct: 73 FPEEIDKINILNASILAMHKAIDQLTDDLKFIIVDGNRFKPYHDIPFEC--IIKGDSKYM 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAAS++AK RD M H+++P Y + + GYPT +H++ I+E G + HR +FR L Sbjct: 131 SIAAASVLAKTYRDGYMEQLHEEFPMYNWKKNKGYPTKEHREAIREYGITKYHRKSFRQL 190 >gi|330752580|emb|CBL87526.1| ribonuclease HII [uncultured Flavobacteria bacterium] Length = 191 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/182 (39%), Positives = 108/182 (59%), Gaps = 7/182 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISIS 84 AG+DE GRG LAGPV A +IL P I INDSK ++ KKR L I AI ++ Sbjct: 12 AGVDEAGRGCLAGPVTAAVVIL-PKGITLPQINDSKILTEKKRYNLRSLIEKCAIDFQVA 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSI 142 IDK NI +T+ A++ A++ L+ P+ ++DG +D+P + ++KGD Sbjct: 71 HVFQDEIDKINILNSTIKAMHLAIKKLKETPQYIIVDGNKFYPYKDVPYKC--IVKGDGK 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AK RD MR ++P+YG++ + GYPT H++ I++ G + HR +F+ Sbjct: 129 YQNIAAASILAKTYRDDYMRKIEYEFPEYGWNKNKGYPTVTHRKAIEKFGITEHHRNSFK 188 Query: 203 PL 204 L Sbjct: 189 LL 190 >gi|15806947|ref|NP_295672.1| ribonuclease HII [Deinococcus radiodurans R1] gi|6459735|gb|AAF11501.1|AE002033_9 ribonuclease HII [Deinococcus radiodurans R1] Length = 212 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 70/183 (38%), Positives = 107/183 (58%), Gaps = 3/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DE GRGA AGP+ VAA+IL + + DSK++S REE ++ A+ ++ Sbjct: 24 VAGVDEAGRGAWAGPLTVAAVILPGTSQEYPFRDSKQLSPAAREEYAAEVRRVAVAWAVE 83 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ N+ AT A A+ L+ P++ + D + DLP A + D++S Sbjct: 84 HAWPEEIDRLNVLGATHAAALRAIARLEPPPQALVTDYLRLRADLPLSA--PPRADALSY 141 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 S+AAAS++AK RDRLMR ++P YGF +H GY H+ ++E G + HR ++ P+ Sbjct: 142 SVAAASLLAKTERDRLMRELDAEFPGYGFAAHKGYGAPAHRAALRELGVTEQHRRSYAPI 201 Query: 205 RNL 207 R L Sbjct: 202 RAL 204 >gi|37521076|ref|NP_924453.1| ribonuclease H [Gloeobacter violaceus PCC 7421] gi|35212072|dbj|BAC89448.1| ribonuclease H [Gloeobacter violaceus PCC 7421] Length = 198 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 77/182 (42%), Positives = 114/182 (62%), Gaps = 8/182 (4%) Query: 29 IDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS-SAIISI 83 +DEVGRGALAG VV AA++L P+ IP GI DSK + +RE L+E+I + ++ + I Sbjct: 1 MDEVGRGALAGCVVAAAVVLPPD-IPLAALAGITDSKLLDRPRREALHERILALASAVGI 59 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 SAS ID+ NI +AT A+ A+ + + L+DG + E L A++ GD S Sbjct: 60 GSASVGEIDRLNILRATALAMGRALHRVAPV-EHVLVDGLPVAE-LGITQTAIVGGDRTS 117 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAASI+AKVTRDR M +++ +G+ ++ GY TA H++ + G + +HR +F P Sbjct: 118 LSIAAASIVAKVTRDRWMERLDRRFAGFGWATNAGYGTAFHREALARLGVTPLHRRSFAP 177 Query: 204 LR 205 +R Sbjct: 178 VR 179 >gi|298530722|ref|ZP_07018124.1| Ribonuclease H [Desulfonatronospira thiodismutans ASO3-1] gi|298510096|gb|EFI34000.1| Ribonuclease H [Desulfonatronospira thiodismutans ASO3-1] Length = 214 Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 77/180 (42%), Positives = 109/180 (60%), Gaps = 4/180 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 P AG+DE GRG LAGPVV A ++L + + DSKKI+ K RE L +I S+ + S+ Sbjct: 21 PPAGLDEAGRGCLAGPVVAAVVVLPLDAQIARLTDSKKITSKVRESLIPEIKSTCLAWSL 80 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLPCQAFAVIKGDSI 142 A + ID+ NI +AT+ A+ AV +L + P L+DG + IP ++P + ++ GD Sbjct: 81 GLAWPREIDRINILQATMTAMKRAVLHLGLTPGQLLVDGNQKIPLNIPQKC--IVGGDMT 138 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AK RD LM ++YP YGF H GY T KH Q +K G S +HR +F+ Sbjct: 139 EPCISAASILAKTFRDMLMTKLDRRYPGYGFGQHKGYGTRKHLQALKSLGASPMHRKSFK 198 >gi|257455290|ref|ZP_05620525.1| ribonuclease HII [Enhydrobacter aerosaccus SK60] gi|257447252|gb|EEV22260.1| ribonuclease HII [Enhydrobacter aerosaccus SK60] Length = 240 Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 116/224 (51%), Gaps = 46/224 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD-----------------------PNNIPF-GINDSK 61 + G+DEVGRG L G VVV A+I D +N P + DSK Sbjct: 6 IIGVDEVGRGPLLGDVVVCALIFDKAILSIKEDSLSTDLPTADSVSISHNHPLSALTDSK 65 Query: 62 KISHKKREELYEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENL--QVIP 115 K+S KKRE L+ I +A ++ IS++ ID+ NI +ATL + AV + Q++ Sbjct: 66 KLSEKKREALFSLIEQTASAHQVVKISAS---LIDQLNILQATLLGMKQAVAGVMAQMLA 122 Query: 116 R------SALIDGRSIPE--DLP-----CQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162 + S ++DG +P DLP A++KGD I+ AS+IAKVTRDR M Sbjct: 123 QYPTATFSVMVDGNKLPVLFDLPNYQQITHEQAIVKGDGKHACISGASVIAKVTRDRDMV 182 Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 K YPDYG + H GYPTA H Q I+ G +HR +F P++ Sbjct: 183 ALSKLYPDYGIEQHKGYPTAAHIQAIEHYGILPMHRKSFAPIKQ 226 >gi|330752106|emb|CBL87067.1| ribonuclease HII [uncultured Flavobacteria bacterium] Length = 194 Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/182 (40%), Positives = 109/182 (59%), Gaps = 7/182 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 AG DE GRG LAGPV AA+IL + N P +NDSKK++ K+R L I A+ +++ Sbjct: 12 AGTDEAGRGCLAGPVTAAAVILPADFNEPL-LNDSKKLTEKQRFYLRPIIEKHAVAFAVA 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSI 142 + + +D+ NI A + A++ A++ L+ P L+DG + +P Q +I+GD Sbjct: 71 HCTPKKVDEINILNAAIKAMHKAIQKLKPTPIHILVDGNRFHPFKKIPHQC--IIRGDGK 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AK RD LM KK+P Y + ++ GYPT KH++ I+ G + HR TFR Sbjct: 129 YQNIAAASILAKTYRDDLMLTLDKKHPKYDWKNNKGYPTKKHREAIRANGITSHHRKTFR 188 Query: 203 PL 204 L Sbjct: 189 LL 190 >gi|313159708|gb|EFR59065.1| ribonuclease HII [Alistipes sp. HGB5] Length = 203 Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 68/178 (38%), Positives = 99/178 (55%), Gaps = 1/178 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 P AG DE GRG LAGPV AA++L P+ +NDSK+++ + RE+L I A+ ++ Sbjct: 15 PEAGCDEAGRGCLAGPVFAAAVMLPPDFHDPLLNDSKQMTERNREKLRTIIEHEAVAWAV 74 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S + ID+ NI A+ + + A L P IDG L ++KGD Sbjct: 75 EAVSAERIDEINILNASFEGMSLAAARLDPAPGFLAIDGNRFRTRLELPYRCIVKGDGKY 134 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAAS++AK RD M +++P YG+ + GYPT +H+ I+E G + HRLTF Sbjct: 135 ADIAAASVLAKTHRDEYMLRLAEEFPQYGWRKNKGYPTREHRLAIREYGLTPHHRLTF 192 >gi|229918612|ref|YP_002887258.1| ribonuclease H [Exiguobacterium sp. AT1b] gi|229470041|gb|ACQ71813.1| Ribonuclease H [Exiguobacterium sp. AT1b] Length = 250 Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 77/183 (42%), Positives = 113/183 (61%), Gaps = 5/183 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 V G+DEVGRG LAGPVV AA++L D +P G+NDSKK++ R+ Y I A + + Sbjct: 72 VVGVDEVGRGPLAGPVVAAAVLLPDGFYLP-GLNDSKKMTKSARDAAYAHIIEVAEVGVG 130 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 ID+ NI++AT A+ A+ + + + LID + D+P Q+ +IKGD++S+ Sbjct: 131 IVEPAIIDEINIYEATKLAMTEAIHQVGEVD-ALLIDAMKLELDIPQQS--LIKGDTLSV 187 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAAS++AKV RDR+M YP YGF + GY T H + ++ G + IHR TF P+ Sbjct: 188 SIAAASVVAKVVRDRMMEEYDLTYPGYGFAKNAGYGTETHLEGLRRLGVTPIHRRTFAPI 247 Query: 205 RNL 207 + + Sbjct: 248 KYM 250 >gi|226939651|ref|YP_002794724.1| ribonuclease HII [Laribacter hongkongensis HLHK9] gi|259494068|sp|C1D4C1|RNH2_LARHH RecName: Full=Ribonuclease HII; Short=RNase HII gi|226714577|gb|ACO73715.1| Rnh2 [Laribacter hongkongensis HLHK9] Length = 198 Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 78/185 (42%), Positives = 109/185 (58%), Gaps = 6/185 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 V G+DE GRG LAG V AA+ILDP G+ DSKK+S +RE L I A+ ++ Sbjct: 5 VCGVDEAGRGPLAGGVYAAAVILDPARPVEGLADSKKLSAARREALAPLIRERALAWCVA 64 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE---DLPCQAFAVIKGDS 141 A+ + ID+ NI AT+ A+ AV+ L V P + +DG +P D+P A A++KGD+ Sbjct: 65 WATVEEIDRLNILHATMLAMCRAVDGLAVPPDAIEVDGNRVPPFVLDIP--ARAIVKGDA 122 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +I+AASI+AK RD +YP YGF +H GYPTA H I+ G +HR +F Sbjct: 123 TVAAISAASILAKTARDAECLELDARYPGYGFAAHKGYPTAAHVAAIERLGVLPVHRRSF 182 Query: 202 RPLRN 206 P++ Sbjct: 183 GPVKR 187 >gi|260910879|ref|ZP_05917522.1| ribonuclease HII [Prevotella sp. oral taxon 472 str. F0295] gi|260634987|gb|EEX53034.1| ribonuclease HII [Prevotella sp. oral taxon 472 str. F0295] Length = 202 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 69/184 (37%), Positives = 107/184 (58%), Gaps = 1/184 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSKK++ K+R L +I + A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVFAAAVILPTDYENALLNDSKKLTEKQRYALRTQIEADALAWAVGE 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + ID+ NI A++ A++ A++ L++ P++ ++DG ++KGD+ LS Sbjct: 73 VTADEIDEINILNASILAMHRALDGLKLRPQAVIVDGNRFKPYGTLPHETIVKGDAKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 IAAASI+AK RD M +YP Y + + GYPT H+ I+E G S HR TF+ ++ Sbjct: 133 IAAASILAKTYRDDYMDNLALQYPAYQWKVNKGYPTKAHRAAIEEHGISPFHRKTFKGVK 192 Query: 206 NLSV 209 + V Sbjct: 193 EMLV 196 >gi|226227701|ref|YP_002761807.1| ribonuclease HII [Gemmatimonas aurantiaca T-27] gi|226090892|dbj|BAH39337.1| ribonuclease HII [Gemmatimonas aurantiaca T-27] Length = 228 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 70/194 (36%), Positives = 114/194 (58%), Gaps = 7/194 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELY 72 +E +R + + G+DEVGRG LAGPVV AI++ + G++DSK++ H+ R L Sbjct: 7 IERTLRAQYGSLLVGVDEVGRGPLAGPVVACAIVMPADRRAIAGVDDSKRLDHRTRVTLA 66 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAV----ENLQVIPRSALIDGRSIPE 127 +I A+ +S+ +AS + +D+ NI+ AT+ A+ A+ + L P ++DG+ + Sbjct: 67 ARIRDHALALSLGAASAREVDRLNIYHATVLAMQRALARIPQRLGAEPHHVVVDGKPL-R 125 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L AV+KGD+ IA ASI+AKVTRDRLM +++ Y ++ + GY T +H+ Sbjct: 126 TLGVVHTAVVKGDAKCYGIACASIVAKVTRDRLMTALAQRHGHYAWERNAGYGTTQHRDG 185 Query: 188 IKEKGPSCIHRLTF 201 I + G + HR +F Sbjct: 186 ISQHGLTAHHRRSF 199 >gi|78356141|ref|YP_387590.1| ribonuclease HII [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|97182419|sp|Q313K1|RNH2_DESDG RecName: Full=Ribonuclease HII; Short=RNase HII gi|78218546|gb|ABB37895.1| RNase HII [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 263 Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 79/209 (37%), Positives = 108/209 (51%), Gaps = 41/209 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF---------GINDSKKISHKKREELYEKITSS 78 GIDE GRG LAGPVV AA+IL P P G+ DSKK+S K+R L I S Sbjct: 43 GIDEAGRGCLAGPVVAAAVILPPAGAPAAPHIAAALSGLTDSKKLSEKRRLTLEPAIKSC 102 Query: 79 AI-ISISSASHQYIDKHNIHKATLDA-----------------------IYHAVENLQVI 114 A+ + Q ID+ NI +AT A ++ AV+ + I Sbjct: 103 AVRWGVGVVWPQVIDRINILQATYRAMSLAVRHLRGGGAAASMPAGLPPVFLAVDGDKTI 162 Query: 115 PRSAL--IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 P L + G S+P++ A++ GD ++I+AAS++AK RDRLM K+Y YG Sbjct: 163 PGQVLQAVTGLSVPQE------AIVGGDGCVMAISAASVLAKTFRDRLMTALDKRYSGYG 216 Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 F +H GY TA H + I+ GP +HRL+F Sbjct: 217 FATHKGYGTAAHIEAIRRLGPCRMHRLSF 245 >gi|87125028|ref|ZP_01080875.1| Ribonuclease HII and HIII [Synechococcus sp. RS9917] gi|86167348|gb|EAQ68608.1| Ribonuclease HII and HIII [Synechococcus sp. RS9917] Length = 205 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 72/189 (38%), Positives = 108/189 (57%), Gaps = 17/189 (8%) Query: 29 IDEVGRGALAGPVVVAAIIL-DPNN---IPFGINDSKKISHKKREELYEKITSSAII-SI 83 +DEVGRG GPV+ AA++L +P + G+ DSK++S ++R +L I + A ++ Sbjct: 1 MDEVGRGCWFGPVLAAAVVLSEPAASRLLAQGLTDSKRLSQRRRAQLVPLIEAEACAWAL 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF-----AVIK 138 AS Q ID I AT A+ A++ L P L+DG LP + + +++ Sbjct: 61 GQASAQDIDSGGIRAATELAMLRALQRLPRCPDQVLVDG-----VLPLRLWLGPQETIVR 115 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GDS SIAAAS++AK RD L++ +P+YG + H GY TA+H+Q + GP+ +HR Sbjct: 116 GDSHCASIAAASVLAKQARDGLIQRLACHFPEYGLERHAGYGTARHRQALLRHGPTPLHR 175 Query: 199 LTFRPLRNL 207 TF LR L Sbjct: 176 RTF--LRKL 182 >gi|254519206|ref|ZP_05131262.1| ribonuclease HII [Clostridium sp. 7_2_43FAA] gi|226912955|gb|EEH98156.1| ribonuclease HII [Clostridium sp. 7_2_43FAA] Length = 270 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 85/188 (45%), Positives = 116/188 (61%), Gaps = 10/188 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI- 80 +AG+DEVGRG LAGP+V A+ILD N I +NDSKK+S KKRE L E I A+ Sbjct: 86 IAGVDEVGRGPLAGPIVACAVILDLNVIEDELILWLNDSKKLSEKKREALAEIIKEKALA 145 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQAFAVIKG 139 IS +S+ ID+ I + A ++++ P L DG I ++P ++ VIKG Sbjct: 146 YFISESSNDEIDEKGIAYCNNNIFLEACTSMKIKPELVLSDGYLIKGINIPNKS--VIKG 203 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D+ S SIAAASI+AKV RD LM+ K+YP Y F+ + GY T+KH + +KE G IHR Sbjct: 204 DAKSASIAAASILAKVYRDNLMKDYSKEYPHYAFEENAGYGTSKHIEGLKEFGACKIHRR 263 Query: 200 TFRPLRNL 207 +F L+N+ Sbjct: 264 SF--LKNI 269 >gi|256390717|ref|YP_003112281.1| ribonuclease H [Catenulispora acidiphila DSM 44928] gi|256356943|gb|ACU70440.1| Ribonuclease H [Catenulispora acidiphila DSM 44928] Length = 224 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 74/190 (38%), Positives = 113/190 (59%), Gaps = 12/190 (6%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN---NIPFGINDSKKISHKKRE----ELYEKITSS 78 VAG DE GRGA AGP+V AA+IL P IP G++DSK ++ + R+ E+ ++ S Sbjct: 36 VAGTDEAGRGACAGPLVAAAVILRPGASGRIP-GLSDSKLLTERARDRVRVEIEKRALSY 94 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 A ++I + +D +H+A ++A+ +V L V P L DG + + LPC + A+ K Sbjct: 95 AWVAIPAPE---VDSRGLHQANIEALRRSVARLDVAPDYVLSDGFRV-DGLPCPSLAMWK 150 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD ++ +AAAS++AK RD +M +++P YGF+ H GY T HQ + E GP HR Sbjct: 151 GDQVAACVAAASVLAKTVRDAMMTELAQRHPAYGFEIHKGYSTPAHQAALTEHGPCPEHR 210 Query: 199 LTFRPLRNLS 208 T+ + N+S Sbjct: 211 FTYANVANVS 220 >gi|294867798|ref|XP_002765242.1| ribonuclease hii, putative [Perkinsus marinus ATCC 50983] gi|239865237|gb|EEQ97959.1| ribonuclease hii, putative [Perkinsus marinus ATCC 50983] Length = 630 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 83/196 (42%), Positives = 112/196 (57%), Gaps = 16/196 (8%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKK-REELYEKITSSAII-- 81 V G+DE GRG L GPVV AA+ ++ + IP+GI DSK IS+++ R+ +YE++T++ + Sbjct: 10 VIGVDEAGRGPLCGPVVAAAVYINQDTYIPYGICDSKTISNEEYRDMMYEQLTNNKGVKW 69 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS------ALIDGRSIP------EDL 129 S+ ++ ID NI +AT A AV L LIDG +P ++ Sbjct: 70 SVGIVDNKVIDTINILQATFTAKTEAVLKLTKDGEGRKSKYHVLIDGNRVPPQLLNNNNI 129 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 Q ++KGDS IAAASIIAKVTRDR+M H P Y H GYPT H ++K Sbjct: 130 NLQCTPIVKGDSKEYIIAAASIIAKVTRDRIMHHIHNNIPQYNVSQHKGYPTTAHIALLK 189 Query: 190 EKGPSCIHRLTFRPLR 205 GPS HRLTF PL+ Sbjct: 190 RLGPSKYHRLTFAPLK 205 >gi|262276832|ref|ZP_06054625.1| ribonuclease HII [alpha proteobacterium HIMB114] gi|262223935|gb|EEY74394.1| ribonuclease HII [alpha proteobacterium HIMB114] Length = 199 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 76/185 (41%), Positives = 109/185 (58%), Gaps = 5/185 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84 V G+DEVGRG LAGPVV AA+IL P + + ++DSKK+S KRE+ +E + + + Sbjct: 14 VVGVDEVGRGPLAGPVVSAAVIL-PLDFDYKCLDDSKKLSKVKREKAFEILKKKSKFKLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRS--ALIDGRSIPEDLPCQAFAVIKGDSI 142 A IDK NI +A+L ++ AV+ +P+ L+DG + IKGD+ Sbjct: 73 IAEVDEIDKINILQASLISMKRAVDQFD-LPKDHKILVDGPWSFDKTNQNIITKIKGDAK 131 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SIAAASIIAKV RD++M K + Y +D++ GY T KH + IKE G + HR +F Sbjct: 132 YPSIAAASIIAKVYRDQIMSKLSKNFVQYSWDTNSGYGTQKHLKAIKEHGITVHHRKSFA 191 Query: 203 PLRNL 207 P+ + Sbjct: 192 PIHKI 196 >gi|73852875|ref|YP_294159.1| putative ribonuclease [Emiliania huxleyi virus 86] gi|72415591|emb|CAI65828.1| putative ribonuclease [Emiliania huxleyi virus 86] Length = 209 Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 78/192 (40%), Positives = 108/192 (56%), Gaps = 14/192 (7%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREELYEKIT-SSAIIS 82 V G+DE GRG LAGPVV A + P N P I DSKK++ K+R E +E +T +S I Sbjct: 22 VVGVDEAGRGCLAGPVVAGACFV-PENEPIHPLIKDSKKMTEKQRMEAFEYLTLNSNIKC 80 Query: 83 ISSASHQY-IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL----PCQAFAVI 137 +S Y ID NI AT+ A+ + + + AL+DG P+ Q F I Sbjct: 81 YASFIEPYEIDDINILNATMKAMGNVIN--ESGANLALVDGDKTPKMFVDTSEIQTF--I 136 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCI 196 KGDS SI+ AS+IAKV+RD M K YP+YGF +H+GY T H I++ GP + Sbjct: 137 KGDSRMYSISCASVIAKVSRDLYMEELSKTYPEYGFANHMGYGTQAHMAAIEKNGPIPFV 196 Query: 197 HRLTFRPLRNLS 208 HR ++ P++ + Sbjct: 197 HRYSYAPIKKFT 208 >gi|317968686|ref|ZP_07970076.1| ribonuclease HII [Synechococcus sp. CB0205] Length = 191 Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 70/187 (37%), Positives = 103/187 (55%), Gaps = 16/187 (8%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSA-I 80 +AG+DEVGRG GPV A++L G+ DSK +S K+R +L I A Sbjct: 3 IAGVDEVGRGCWFGPVFAGAVVLSDAARETLSAAGLTDSKALSAKRRSQLVPLILEQAES 62 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQV-IPRSALIDGRSIPEDLPCQAFA---- 135 ++ AS Q +D I AT A+ A++ L P L+DG +LP + ++ Sbjct: 63 WALGQASAQEVDGLGIRSATERAMLRALQRLGSPAPDHVLVDG-----NLPLRLWSGSQE 117 Query: 136 -VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 V++GDS L IAAAS++AK RD L+ ++YP YGF+ H GY TA+H+ + GP+ Sbjct: 118 TVVRGDSAHLEIAAASVLAKQARDALLVRLGQRYPGYGFERHAGYGTAQHRAAVLSLGPT 177 Query: 195 CIHRLTF 201 +HR +F Sbjct: 178 QLHRRSF 184 >gi|258546183|ref|ZP_05706417.1| ribonuclease HII [Cardiobacterium hominis ATCC 15826] gi|258518608|gb|EEV87467.1| ribonuclease HII [Cardiobacterium hominis ATCC 15826] Length = 190 Score = 117 bits (294), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 81/181 (44%), Positives = 108/181 (59%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 +AG+DE GRGAL G V+ AA+IL + + DSKK+S ++RE LY IT+ A+ ++ Sbjct: 2 IAGVDEAGRGALVGNVIAAAVILPASYELPDLTDSKKLSARQREALYAAITAQAVAWSAA 61 Query: 86 ASHQY-IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A+ ID NIH ATL A+ A+ L P ALIDG+ P L A A++ GD+ Sbjct: 62 AATPAEIDTLNIHHATLLAMQRALAALNPPPSQALIDGKFTPT-LAIPARAIVGGDASEA 120 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASIIAKVTRDR M +YP YGF +H GY T H + G + HR ++ P+ Sbjct: 121 CIAAASIIAKVTRDREMLALEARYPGYGFATHKGYGTQAHLAALARLGATPEHRRSYAPV 180 Query: 205 R 205 R Sbjct: 181 R 181 >gi|227535995|ref|ZP_03966044.1| ribonuclease H [Sphingobacterium spiritivorum ATCC 33300] gi|227244238|gb|EEI94253.1| ribonuclease H [Sphingobacterium spiritivorum ATCC 33300] Length = 198 Score = 117 bits (294), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 73/177 (41%), Positives = 98/177 (55%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+I + +NDSKK+S KKR L I A+ +++S Sbjct: 13 AGCDEAGRGCLAGPVFAAAVIFPKDYHHDLLNDSKKLSEKKRMALRPIIEQEALAFAVAS 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NIH A+ A++ A++ L+V ++DG +IKGD LS Sbjct: 73 VSAEEIDKINIHNASYLAMHRALDQLKVKAEYIIVDGNRFIPYPEVSHTCIIKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD M +P Y + + GYPT KH+ + G + HR TFR Sbjct: 133 IAAASILAKTYRDEYMESIACDFPAYDWLQNKGYPTVKHRNAVLAYGLTPHHRKTFR 189 >gi|317059895|ref|ZP_07924380.1| ribonuclease HII [Fusobacterium sp. D12] gi|313685571|gb|EFS22406.1| ribonuclease HII [Fusobacterium sp. D12] Length = 210 Score = 117 bits (294), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 75/182 (41%), Positives = 105/182 (57%), Gaps = 6/182 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84 + G+DE GRG LAGPVV AA +L + I DSKK++ KKRE L+ I + + I Sbjct: 21 IIGVDEAGRGPLAGPVVAAATLLKKYDASLEEIQDSKKLTEKKREALFSMIPNYFYVGIG 80 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSA--LIDGRSIPEDLPCQAFAVIKGD 140 AS + I+ +NI AT A+ A+ L Q+ A L+DG + + A++KGD Sbjct: 81 RASVEEIEAYNILNATFLAMRRAIAQLEEQISIEDAIILVDGNFKIRECQRKQEAIVKGD 140 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHRL 199 + SLSIA ASI+AKVTRD + K+YP+Y F+ H GY T H++ I G +HR Sbjct: 141 AKSLSIATASIMAKVTRDHELLELAKQYPEYHFEKHKGYGTKMHREQILTLGAIPGVHRN 200 Query: 200 TF 201 +F Sbjct: 201 SF 202 >gi|34540527|ref|NP_905006.1| ribonuclease HII [Porphyromonas gingivalis W83] gi|38605679|sp|Q51832|RNH2_PORGI RecName: Full=Ribonuclease HII; Short=RNase HII gi|34396840|gb|AAQ65905.1| ribonuclease HII [Porphyromonas gingivalis W83] Length = 201 Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 101/179 (56%), Gaps = 5/179 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRG LAGPV AA+IL + +NDSK++S K+R L I S I I Sbjct: 14 CGCDEAGRGCLAGPVYAAAVILPADFSHPLLNDSKQLSEKQRYTLRPVIESETIGWGIGI 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143 S Q ID+ NI +A+ A++ A+E L P LIDG E +P ++ GD+ Sbjct: 74 VSPQEIDEINILRASFLAMHRAIEQLPFRPERLLIDGNRFDPFEQIPHHC--IVGGDARY 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SIAAASI+AK RD M +K +P YG++ + GYP+ H+ I+ G S HRLTFR Sbjct: 132 RSIAAASILAKTYRDDSMLRLNKDFPMYGWERNKGYPSPAHKSAIRRFGVSPHHRLTFR 190 >gi|257462226|ref|ZP_05626643.1| ribonuclease HII [Fusobacterium sp. D12] Length = 209 Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 75/182 (41%), Positives = 105/182 (57%), Gaps = 6/182 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISIS 84 + G+DE GRG LAGPVV AA +L + I DSKK++ KKRE L+ I + + I Sbjct: 20 IIGVDEAGRGPLAGPVVAAATLLKKYDASLEEIQDSKKLTEKKREALFSMIPNYFYVGIG 79 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSA--LIDGRSIPEDLPCQAFAVIKGD 140 AS + I+ +NI AT A+ A+ L Q+ A L+DG + + A++KGD Sbjct: 80 RASVEEIEAYNILNATFLAMRRAIAQLEEQISIEDAIILVDGNFKIRECQRKQEAIVKGD 139 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHRL 199 + SLSIA ASI+AKVTRD + K+YP+Y F+ H GY T H++ I G +HR Sbjct: 140 AKSLSIATASIMAKVTRDHELLELAKQYPEYHFEKHKGYGTKMHREQILTLGAIPGVHRN 199 Query: 200 TF 201 +F Sbjct: 200 SF 201 >gi|328948714|ref|YP_004366051.1| ribonuclease H [Treponema succinifaciens DSM 2489] gi|328449038|gb|AEB14754.1| Ribonuclease H [Treponema succinifaciens DSM 2489] Length = 199 Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 75/196 (38%), Positives = 106/196 (54%), Gaps = 20/196 (10%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-NDSKKISHKKREELYEKITSSAIISIS 84 + GIDE GRG LAGPV ++L P + P I NDSKK+S KKRE + I + I Sbjct: 4 LVGIDEAGRGPLAGPVTAGCVLL-PIDFPVEILNDSKKLSEKKREAASDVIREKSCWGIG 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQV-IP----------------RSALIDGRSIP- 126 S + ID+ NI +A A+ A + +++ +P ++DG +P Sbjct: 63 IVSEKIIDEINILQADFKAMKIAFDMMRMKLPAWCEKNKFNFEQCKNSMQIIVDGNMLPF 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D AVIK DS + AASI+AKV RD++M K YP+YG+ H GYPT H++ Sbjct: 123 TDKNLDIKAVIKADSKFPCVMAASILAKVQRDKIMIDYDKLYPEYGYAKHKGYPTLAHKE 182 Query: 187 VIKEKGPSCIHRLTFR 202 + + GPS I RL+F+ Sbjct: 183 ICRRLGPSPIQRLSFK 198 >gi|281357062|ref|ZP_06243552.1| Ribonuclease H [Victivallis vadensis ATCC BAA-548] gi|281316620|gb|EFB00644.1| Ribonuclease H [Victivallis vadensis ATCC BAA-548] Length = 223 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 85/185 (45%), Positives = 114/185 (61%), Gaps = 6/185 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITS--SAIIS 82 VAG+DEVGRG LAGPVV AA++ P +P+ G+ DSK++ RE L +I S I Sbjct: 30 VAGVDEVGRGPLAGPVVAAAVVF-PRGVPWPGVYDSKQLKAADRERLDREIRSVPGVRIG 88 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I + ID+ NI AT A+ AV + L+DGR + ++LPC + A++KGDS Sbjct: 89 IGEVPVEEIDRINILNATHRAMREAVLAAGEV-DFILVDGRPV-KNLPCPSRALVKGDSR 146 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 S SIAAASI+AKV RDRLM ++P YGF H GY TA H + ++ GP HR +FR Sbjct: 147 SASIAAASIVAKVYRDRLMDELDLRWPGYGFKEHKGYGTAAHLESLRRLGPCPAHRKSFR 206 Query: 203 PLRNL 207 P+R + Sbjct: 207 PVREI 211 >gi|170079067|ref|YP_001735705.1| ribonuclease HII [Synechococcus sp. PCC 7002] gi|169886736|gb|ACB00450.1| ribonuclease HII [Synechococcus sp. PCC 7002] Length = 200 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/184 (43%), Positives = 113/184 (61%), Gaps = 9/184 (4%) Query: 26 VAGIDEVGRGALAGPVVVAA----IILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 +AG+DEVGRG L GPVV A I + G+ DSKK+S K+RE L +I + Sbjct: 4 LAGVDEVGRGCLFGPVVAAVVVVNTIQEQALGELGVTDSKKLSAKRRETLVPQIQALVTD 63 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPE-DLPCQAFAVIK 138 +I+SAS ID+ NI +AT A+ AVE LQ+ P +DGR +IP+ + P QA +I+ Sbjct: 64 WAIASASVAEIDQLNILQATFLAMTRAVEKLQIKPTEIFVDGRQTIPKLNYPQQA--IIQ 121 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GDS +IAAASI+AKV RD+ + + YP+Y ++ GY T KH+Q I + G + HR Sbjct: 122 GDSKVKAIAAASILAKVQRDQDIIQLAEHYPEYDLANNKGYGTQKHRQAIWQYGLTPHHR 181 Query: 199 LTFR 202 +F+ Sbjct: 182 QSFK 185 >gi|168061299|ref|XP_001782627.1| predicted protein [Physcomitrella patens subsp. patens] gi|162665860|gb|EDQ52530.1| predicted protein [Physcomitrella patens subsp. patens] Length = 655 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 88/238 (36%), Positives = 119/238 (50%), Gaps = 36/238 (15%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGIND 59 S+ + P +LE + E VAG+DE GRG LAGPVV AA I+ P I F ++ Sbjct: 412 SLKKFPSRDLEMKLWELGFRNVAGVDEAGRGPLAGPVVAAACIIPASATIPGKICFCVSQ 471 Query: 60 -SKKISHKKREELYEKITSSAIISISSASHQY------------------------IDKH 94 S + S +EE Y ++ A + H ID+ Sbjct: 472 WSCRASGPCQEEPYVRLNGVAQWKETFTVHHLWMSRELWCSWFRVAGQIHVVDAAKIDEI 531 Query: 95 NIHKATLDAIYHAVENLQV-----IPRSALIDGRSIPEDLPCQ-AFAVIKGDSISLSIAA 148 NI +ATL A+ V+ L+ P LIDG IP++L + A VIKGD+ IAA Sbjct: 532 NILQATLLAMSTCVKKLRKERGGEAPDYILIDGNRIPDELSKEEAQFVIKGDAECHVIAA 591 Query: 149 ASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 ASI+AKVTRDR+M +++P YGF +H GY TA H + GP IHR +F PL+ Sbjct: 592 ASILAKVTRDRMMVDYDRRWPVYGFKAHKGYGTAAHIGALLNHGPCDIHRRSFAPLKG 649 >gi|332665027|ref|YP_004447815.1| ribonuclease H [Haliscomenobacter hydrossis DSM 1100] gi|332333841|gb|AEE50942.1| Ribonuclease H [Haliscomenobacter hydrossis DSM 1100] Length = 199 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/179 (38%), Positives = 102/179 (56%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85 AG DE GRG LAGPV AA+IL + +NDSK+++ ++R EL I +SA +++ Sbjct: 13 AGCDEAGRGCLAGPVFAAAVILPKDFRHPLLNDSKQLTEQQRLELRCIIKASATCWAVAQ 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ID+ NI A+ A++ A++ L+ P L+DG +IKGD I +S Sbjct: 73 VDPAEIDQVNILNASFLAMHRALDKLETPPELILVDGNRFTPYRNIAHRCIIKGDGIYMS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M + +P YG+ + GYPT H++ ++ G + HR +FR L Sbjct: 133 IAAASILAKTYRDDYMADLAESHPQYGWSKNKGYPTKAHREALRHHGVTSHHRRSFRLL 191 >gi|317121802|ref|YP_004101805.1| ribonuclease H [Thermaerobacter marianensis DSM 12885] gi|315591782|gb|ADU51078.1| Ribonuclease H [Thermaerobacter marianensis DSM 12885] Length = 327 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/182 (43%), Positives = 109/182 (59%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRG LAGPVV AA+IL + G++DSK++ R+ L + A+ ++ Sbjct: 114 VAGVDEVGRGCLAGPVVAAAVILSGDACLPGLDDSKRLKPAARDGLAAAVRRQALAWAVG 173 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A+ ID NI AT A+ A++ L V P+ ++DGRS P DL AV+ GD+ Sbjct: 174 IATPAEIDALNIWHATRLAMRRALDALPVPPQRVVVDGRS-PGDLGYPVEAVVDGDARFA 232 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAAS++AKV RD M + YP YGF H GY TA+H+Q + GP HR +F P+ Sbjct: 233 AIAAASVVAKVFRDAWMARLDRVYPVYGFARHKGYATAEHRQALALYGPCPEHRRSFLPV 292 Query: 205 RN 206 R Sbjct: 293 RQ 294 >gi|332519701|ref|ZP_08396165.1| Ribonuclease H [Lacinutrix algicola 5H-3-7-4] gi|332044260|gb|EGI80454.1| Ribonuclease H [Lacinutrix algicola 5H-3-7-4] Length = 199 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/184 (40%), Positives = 106/184 (57%), Gaps = 11/184 (5%) Query: 27 AGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSAII-S 82 G DE GRG LAGPV AA+IL NNI +NDSKK+S KRE L I + AI + Sbjct: 13 CGTDEAGRGCLAGPVTAAAVILPKKFKNNI---LNDSKKLSKGKRELLKPIIENEAICYA 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGD 140 + ID+ NI A++ A+ ++ L P ++DG ++P + +IKGD Sbjct: 70 FTHVYENEIDEINILNASILAMQRSILELNPKPEFIIVDGNRFKPLNNIPFET--IIKGD 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S LSIAAAS++AK RD M H+++P Y + + GYPT +H++ I++ G + HR + Sbjct: 128 SKYLSIAAASVLAKTYRDAYMLKIHEEFPMYNWKKNKGYPTKEHREAIRKYGITKYHRKS 187 Query: 201 FRPL 204 FR L Sbjct: 188 FRLL 191 >gi|325282798|ref|YP_004255339.1| Ribonuclease H [Deinococcus proteolyticus MRP] gi|324314607|gb|ADY25722.1| Ribonuclease H [Deinococcus proteolyticus MRP] Length = 215 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/199 (38%), Positives = 113/199 (56%), Gaps = 9/199 (4%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN---IPFGINDSKKISHK 66 P + LE + + VAG+DE GRGA AGPV VAA+IL PN +PF DSK ++ + Sbjct: 11 PDWSLERQHWVRGYFRVAGVDEAGRGAWAGPVTVAAVIL-PNTGAELPFA--DSKTLTAR 67 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +RE L E++ A+ ++ A I++ NI AT A A+ L P++ + D + Sbjct: 68 QREMLAEEVRRVAVAWAVEYAWPDEIERLNILGATHAAAARALAALDPEPQALVTDYLRL 127 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 LP A + D++S S+AAAS++AK RD LM +YP YGF +H GY +H+ Sbjct: 128 RTPLPI--LAPPRADALSYSVAAASLLAKTERDALMTRLDAQYPGYGFAAHKGYGAPQHR 185 Query: 186 QVIKEKGPSCIHRLTFRPL 204 + E G S +HR +FRP+ Sbjct: 186 AALDELGVSAVHRRSFRPI 204 >gi|189345575|ref|YP_001942104.1| ribonuclease HII [Chlorobium limicola DSM 245] gi|189339722|gb|ACD89125.1| Ribonuclease H [Chlorobium limicola DSM 245] Length = 299 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/188 (39%), Positives = 107/188 (56%), Gaps = 6/188 (3%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-----INDSKKISHKKREELYEKI 75 +N + GIDE GRG LAGPVV AA++ P +NDSKK+S R EL I Sbjct: 105 RNTELLCGIDEAGRGPLAGPVVAAAVVFPRWFTPETDRLSLLNDSKKLSPGLRTELASSI 164 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 ++A+ + + + ID+ NI AT+ A+ +AV +L P L+DG LP Sbjct: 165 KAAALHWATALIEPETIDRINIFHATMLAMNNAVTSLSETPELLLVDGNRFRPLLPIPYE 224 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 ++KGD+ SIAAAS++AK RD +M+ YP YGF+ H GYPT +H + + + G S Sbjct: 225 TIVKGDAKVFSIAAASVLAKTCRDTIMKEYALLYPQYGFEHHFGYPTGEHIRAVAQYGRS 284 Query: 195 CIHRLTFR 202 IHR +F+ Sbjct: 285 PIHRKSFK 292 >gi|295836133|ref|ZP_06823066.1| ribonuclease HII [Streptomyces sp. SPB74] gi|197695228|gb|EDY42161.1| ribonuclease HII [Streptomyces sp. SPB74] Length = 233 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/177 (38%), Positives = 99/177 (55%), Gaps = 1/177 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAGIDEVGRGA AGPV V A + P G+ DSK ++ K+R L ++ S+ Sbjct: 23 VAGIDEVGRGAWAGPVSVCAAVTGLRRAPEGLTDSKLLTPKRRAALVVELEKWVTAHSLG 82 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID + A A A++ L V P ++DG P VIKGD + Sbjct: 83 HASPEEIDALGMTAALRLAAVRALDGLPVRPDWVILDGNHDYLGAPWNVRTVIKGDQSCV 142 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 S+AAAS++AKV RDRLM ++ D+ F ++ GYP+ H+ + E+GP+ HRL++ Sbjct: 143 SVAAASVLAKVARDRLMAELGAQHEDFAFAANAGYPSPAHKTALAERGPTPYHRLSW 199 >gi|120437251|ref|YP_862937.1| ribonuclease HII [Gramella forsetii KT0803] gi|189043601|sp|A0M5H5|RNH2_GRAFK RecName: Full=Ribonuclease HII; Short=RNase HII gi|117579401|emb|CAL67870.1| ribonuclease HII [Gramella forsetii KT0803] Length = 198 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/182 (39%), Positives = 105/182 (57%), Gaps = 5/182 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG DE GRG LAGPV AA+IL +NDSK ++ K R L I AI ++ Sbjct: 11 VAGADEAGRGCLAGPVTAAAVILPIEFKNAVLNDSKTLNLKNRNFLKSLIEDEAITYGVA 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSI 142 + ID+ NI A++ A++ A++ L+ P ++DG + +P + +IKGD Sbjct: 71 HVFMKEIDEINILNASILAMHRALQVLKFDPDHIIVDGNRFKPYQKIPHEC--IIKGDGK 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +SIAAASI+AK RD M H+++PDY + + GYPT +H+ IK+ G + HR +F+ Sbjct: 129 YMSIAAASILAKTYRDEFMEKIHEEFPDYNWKKNKGYPTKEHRAAIKKYGVTKYHRKSFK 188 Query: 203 PL 204 L Sbjct: 189 LL 190 >gi|320334228|ref|YP_004170939.1| Ribonuclease H [Deinococcus maricopensis DSM 21211] gi|319755517|gb|ADV67274.1| Ribonuclease H [Deinococcus maricopensis DSM 21211] Length = 210 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/198 (37%), Positives = 110/198 (55%), Gaps = 7/198 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKK 67 P F LE + + VAG+DE GRGA AGP+ VAA+IL P ++PF DSK +S + Sbjct: 3 PDFSLERQHWARGFFRVAGVDEAGRGAWAGPLTVAAVILPATPTDLPF--RDSKTLSAAQ 60 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE L ++ A+ ++ A ID+ N+ AT A A+ L+V P++ + D + Sbjct: 61 REALAAEVRRVAVAWAVEFAEADEIDRLNVLGATHAAALRALRRLEVAPQALITDYLRLR 120 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 DLP A + D++S S+AAAS++AK RDR M +P YGF +H GY + H+ Sbjct: 121 TDLPL--LAPPRADALSYSVAAASLLAKTERDRRMVELDALHPGYGFAAHKGYGVSAHRA 178 Query: 187 VIKEKGPSCIHRLTFRPL 204 + G S HR +F P+ Sbjct: 179 ALDRLGVSDEHRRSFGPV 196 >gi|257784502|ref|YP_003179719.1| Ribonuclease H [Atopobium parvulum DSM 20469] gi|257473009|gb|ACV51128.1| Ribonuclease H [Atopobium parvulum DSM 20469] Length = 257 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 10/202 (4%) Query: 8 ERPHFE---LEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 E+ H E +E M R + + V G+DEVGRG++AGP+ V A+ L I +G+NDS Sbjct: 47 EKEHVEKIRVEEMYRFQKEFSGGGLVVGVDEVGRGSVAGPLTVCAVCLPDEPIIYGLNDS 106 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK++ KRE L E+I A I I+ S Q ID+ + + DA+ AV+N + P L Sbjct: 107 KKLTATKREILAEQIQEVATAIGIAHISPQRIDEVGMAQCLRDAMLQAVKNTGIEPDCVL 166 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 IDG P + + ++KGD+ SIAAASI+AKVTRD LM ++YP Y GY Sbjct: 167 IDGN--PMHIHPKEKTLVKGDARIASIAAASIVAKVTRDALMVAYDEEYPGYYLAECKGY 224 Query: 180 PTAKHQQVIKEKGPSCIHRLTF 201 +A+H + I EKG S IHR +F Sbjct: 225 ASAEHIKAIGEKGLSPIHRASF 246 >gi|21224156|ref|NP_629935.1| ribonuclease HII [Streptomyces coelicolor A3(2)] gi|7227921|sp|O69989|RNH2_STRCO RecName: Full=Ribonuclease HII; Short=RNase HII gi|3036877|emb|CAA18510.1| probable ribonuclease HII [Streptomyces coelicolor A3(2)] Length = 233 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/183 (38%), Positives = 104/183 (56%), Gaps = 1/183 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL-YEKITSSAIISIS 84 +AG+DEVGRGA AGPV V A I P G+ DSK ++ K+R EL E T ++ Sbjct: 23 IAGVDEVGRGAWAGPVTVCAAITGLRRPPVGLTDSKLLTIKRRTELEVELRTWVTSYALG 82 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID + A A A+ L V P + ++DG+ P + VIKGD + Sbjct: 83 HASPEEIDAMGMTAALRLAAVRALGTLPVRPDAVILDGKHDYLGAPWRVRTVIKGDQSCI 142 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 ++AAAS++AKV RD++M + D+GF + GYP+ H+ ++E+GP+ HRL++ L Sbjct: 143 AVAAASVLAKVQRDKMMAELGVDHADFGFADNAGYPSPVHKAALEERGPTPHHRLSWAYL 202 Query: 205 RNL 207 L Sbjct: 203 DAL 205 >gi|223986426|ref|ZP_03636431.1| hypothetical protein HOLDEFILI_03743 [Holdemania filiformis DSM 12042] gi|223961622|gb|EEF66129.1| hypothetical protein HOLDEFILI_03743 [Holdemania filiformis DSM 12042] Length = 207 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/196 (37%), Positives = 106/196 (54%), Gaps = 12/196 (6%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 E++ W V GIDE GRG +AGP+VVA + D I DSK +S KKRE+L+ I Sbjct: 10 ERSFWDQGKHVVGIDEAGRGPIAGPLVVAGAVFDIGYANSEIYDSKALSEKKREKLFSLI 69 Query: 76 TSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ-- 132 A I + + ID NI++AT A+ ++ + L D + L C Sbjct: 70 LREARCYKIKIVTPEEIDTLNIYRATQKAMEEIA--CEINAEAVLTDAMPL---LHCSKP 124 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD SLSIAA SI+AKV RD +M + YPDYGF H GYPT H + +++ G Sbjct: 125 TLSIIKGDQKSLSIAAGSILAKVVRDHIMLGYDRLYPDYGFARHKGYPTKAHLEAMEKYG 184 Query: 193 PSCIHRLTFRPLRNLS 208 +R ++ P+ ++ Sbjct: 185 VLPFYRKSYGPVARMN 200 >gi|308276686|gb|ADO26585.1| ribonuclease HII [Corynebacterium pseudotuberculosis I19] Length = 204 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 69/174 (39%), Positives = 94/174 (54%), Gaps = 4/174 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREEL 71 E + + + PVAGIDE GRG+ GP+ +AA IL I + DSKK+S + REEL Sbjct: 31 FEGTLEKWGLGPVAGIDEAGRGSCCGPITIAACILPSRPIAALATLTDSKKLSSRMREEL 90 Query: 72 YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y I A+ SI S ID++ I A + + A+ L P LID +P L Sbjct: 91 YPLIKKYAVAWSILHISASEIDRYGIQHANISGMRRAIALLSKQPGYVLIDAMRVP-GLT 149 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 C + +I GD+ + IAAAS++AK +RD LM ++YP YG H GY T H Sbjct: 150 CPSLPIIGGDTAARCIAAASVLAKQSRDELMIDLDREYPGYGLGDHKGYGTKSH 203 >gi|254467826|ref|ZP_05081232.1| ribonuclease HII [beta proteobacterium KB13] gi|207086636|gb|EDZ63919.1| ribonuclease HII [beta proteobacterium KB13] Length = 179 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/178 (46%), Positives = 109/178 (61%), Gaps = 4/178 (2%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSA 86 GIDEVGRG +AGPVV AA+++D + ++DSK +S K+RE L ++I + SIS Sbjct: 4 GIDEVGRGCVAGPVVAAAVVIDES-FDVLVSDSKLLSAKRRESLDKEIKKKCVDFSISVI 62 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSI 146 + + +D+ NIHKA+L A+ A NL S DG+ P+ A A + GD + I Sbjct: 63 NSKIVDEINIHKASLLAMEQAYINLCHQSGSIKCDGKFTPK--IDGAVAHVNGDKLYTEI 120 Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +AASIIAKV RD LM KYPDY FD H GY T H + I++ GP IHRLTF+P Sbjct: 121 SAASIIAKVYRDHLMNYISLKYPDYHFDKHKGYLTKLHLEAIEQYGPCNIHRLTFKPF 178 >gi|167753859|ref|ZP_02425986.1| hypothetical protein ALIPUT_02144 [Alistipes putredinis DSM 17216] gi|167658484|gb|EDS02614.1| hypothetical protein ALIPUT_02144 [Alistipes putredinis DSM 17216] Length = 198 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 67/178 (37%), Positives = 99/178 (55%), Gaps = 1/178 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 P AG DE GRG LAGPV AA++L P+ +NDSK+++ ++R+ L + A+ + Sbjct: 11 PEAGCDEAGRGCLAGPVFAAAVMLPPDFSHPLLNDSKQMTARQRDLLRAIVEREALAWVV 70 Query: 85 SA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A S + ID+ NI A+ + + AV L + P IDG L ++KGD Sbjct: 71 KAVSAERIDQINILNASFEGMSLAVAELPIRPGFLAIDGNRFRTTLDIPYRCIVKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAAS++AK RD M +P+YG++ + GYPT +H+ I+ G + HRLTF Sbjct: 131 ADIAAASVLAKTHRDEYMERLAGDFPEYGWERNKGYPTREHRLAIRRYGLTPHHRLTF 188 >gi|241896010|ref|ZP_04783306.1| ribonuclease HII [Weissella paramesenteroides ATCC 33313] gi|241870741|gb|EER74492.1| ribonuclease HII [Weissella paramesenteroides ATCC 33313] Length = 254 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/204 (39%), Positives = 123/204 (60%), Gaps = 12/204 (5%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 +R +FE +A + K VAGIDEVGRG LAGPVV AA+++D + ++DSK++S K Sbjct: 57 KRLNFERKAWQQGK---VVAGIDEVGRGPLAGPVVAAAVVIDDSFDMTIVHDSKQLSEKT 113 Query: 68 RE----ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 R+ E+ EK+ A + + ID+ NI++A+ A+ +VE L V LID Sbjct: 114 RQSIDTEIREKVVDFAFGVVDAKD---IDRLNIYEASRVAMRQSVEALSVPIDGLLIDAM 170 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 ++ ++P + +IKGD S+SI AASI+AK RD LM+ +++P YGF+ + GY TA+ Sbjct: 171 TVDLEIPQEK--LIKGDDRSISIGAASILAKNYRDNLMKDFAQQFPGYGFEHNAGYGTAE 228 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H + G + IHR +F P++ Sbjct: 229 HLAGLNTLGITPIHRKSFAPVKKF 252 >gi|91218354|ref|ZP_01255298.1| ribonuclease HII [Psychroflexus torquis ATCC 700755] gi|91183492|gb|EAS69891.1| ribonuclease HII [Psychroflexus torquis ATCC 700755] Length = 197 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/180 (40%), Positives = 104/180 (57%), Gaps = 5/180 (2%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSA 86 G DE GRG LAGPV AA+IL + + DSK +S KRE L + S++ I+ Sbjct: 14 GTDEAGRGCLAGPVTAAAVILPKDFKNELLTDSKLLSSSKREFLEVILKESSVSFGIAHI 73 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGDSISL 144 + ID+ NI A++ A++ +++ L P L+DG ++P Q +IKGDS L Sbjct: 74 MMETIDEINILNASIKAMHASIQQLTPDPELILVDGNRFHTYPNIPHQC--IIKGDSKFL 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASI AK RD M+ K++P YG+ + GYPT H++ I+E G + HR +F+ L Sbjct: 132 SIAAASIFAKTARDAYMKTIDKEFPMYGWAQNKGYPTKAHRKAIREYGITKYHRQSFKLL 191 >gi|304316917|ref|YP_003852062.1| ribonuclease H [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778419|gb|ADL68978.1| Ribonuclease H [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 245 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 81/181 (44%), Positives = 107/181 (59%), Gaps = 2/181 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 N + G+DEVGRG LAGPVV ++L + +NDSKK+ +KRE L E I +AI Sbjct: 56 NYKAIGGVDEVGRGPLAGPVVAGCVVLPKDVFIPDVNDSKKLGEEKRELLSEVIKKNAIA 115 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I ++YID NI +T +A+ A+ + V LID IP ++ +IKGD Sbjct: 116 YGIGIIDNEYIDSVNILNSTYEAMRIAISKIDVEIDCLLIDAVKIP-NIDIMQKPIIKGD 174 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+SIAAASIIAKV RD LM+ + YP YGF + GY T +H + IK+ GP IHR T Sbjct: 175 MKSISIAAASIIAKVERDNLMKKYDELYPQYGFKKNKGYGTKEHIEAIKKYGPCPIHRKT 234 Query: 201 F 201 F Sbjct: 235 F 235 >gi|326798587|ref|YP_004316406.1| ribonuclease H [Sphingobacterium sp. 21] gi|326549351|gb|ADZ77736.1| Ribonuclease H [Sphingobacterium sp. 21] Length = 200 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/179 (40%), Positives = 107/179 (59%), Gaps = 5/179 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+I + +NDSK +S +R +L E I + A+ +++S Sbjct: 13 AGCDEAGRGCLAGPVFAAAVIFSSSFKHGILNDSKILSAAQRYDLREMIENEALAFAVAS 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143 AS + ID+ NI A+ A++ A++ L++ L+DG +++P Q VIKGD Sbjct: 73 ASAEEIDQINILNASFLAMHRALDALKMQAEYILVDGNRFRRYQNIPHQC--VIKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 LSIAAASI+AK RD M ++P+Y + + GYPT +H+ + + G + HR TFR Sbjct: 131 LSIAAASILAKTYRDDYMDNLANEHPEYDWLKNKGYPTKRHRDAVLKYGLTPHHRKTFR 189 >gi|238810213|dbj|BAH70003.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 217 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 68/192 (35%), Positives = 110/192 (57%), Gaps = 8/192 (4%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEK 74 EK +P + G+DE GRG AGP+VV +I+ N N P I DSK++S K+REE E Sbjct: 24 EKENYPDTKLIVGLDEAGRGCCAGPLVVGCVIMPQNFNHPL-IKDSKQLSQKQREEALEI 82 Query: 75 ITSSAIISISSA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I +AI ++++ + Q +D+ N +A+ + + L P + D I D+ Sbjct: 83 ILENAIETVTTIINAQEVDQLNPKQASRIGMQRCINKLNTKPELVITDFEKI-NDINIPQ 141 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++KGD +S+++AAASI+AKVTRD +M KK+P Y F + GY T +H+ + + G Sbjct: 142 INLVKGDQLSINVAAASILAKVTRDLIMVGIDKKFPMYNFKKNKGYCTKEHEAAMSQYGI 201 Query: 194 SCIHRLTFRPLR 205 HR +++ ++ Sbjct: 202 CEFHRKSYKNVK 213 >gi|26554469|ref|NP_758403.1| ribonuclease HII [Mycoplasma penetrans HF-2] gi|26454479|dbj|BAC44807.1| ribonuclease HII [Mycoplasma penetrans HF-2] Length = 218 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 78/213 (36%), Positives = 115/213 (53%), Gaps = 10/213 (4%) Query: 1 MFCN-----SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF 55 MF N +I + F+ + +REK + G+DEVGRG +AGP+VV +IL+PN Sbjct: 1 MFLNIVVRINIMKNKLFDFDNSLREK-YKNIIGLDEVGRGCIAGPLVVVGVILNPNFFDD 59 Query: 56 GINDSKKI-SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQV 113 I DSK I S + R+EL I ++I I + +D+ +A++ + L Sbjct: 60 RIKDSKLIKSIELRKELKNLILKNSISYQIEVVNSNIVDQLGPKQASVKGMTKIANGLIN 119 Query: 114 IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 L D I +DL ++KGD+ S +IA ASIIAK TRD M KYP+Y F Sbjct: 120 DYDLCLTDFEKI-KDLEKPQMNLVKGDNTSFTIACASIIAKSTRDDYMEELDNKYPNYLF 178 Query: 174 DSHVGYPTAKHQQVIKEKGP-SCIHRLTFRPLR 205 +H GY T KH Q+I + GP +HR +++P++ Sbjct: 179 KNHQGYLTKKHLQLIHQYGPIKEVHRFSYKPIK 211 >gi|318059574|ref|ZP_07978297.1| ribonuclease HII [Streptomyces sp. SA3_actG] gi|318075436|ref|ZP_07982768.1| ribonuclease HII [Streptomyces sp. SA3_actF] Length = 233 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 69/177 (38%), Positives = 100/177 (56%), Gaps = 1/177 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAGIDEVGRGA AGPV V A + P G+ DSK ++ K+R L ++ S+ Sbjct: 23 VAGIDEVGRGAWAGPVSVCAAVTGLRRPPEGLTDSKLLTPKRRVALVVELERWVTAHSLG 82 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID+ + A A A++ L V P ++DG P VIKGD + Sbjct: 83 HASPEEIDELGMTAALRLAAGRALDGLPVRPDWVILDGNHDYLGAPWNVRTVIKGDQSCV 142 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 S+AAAS++AKV RDRLM ++ D+ F ++ GYP+ H+ + E+GP+ HRL++ Sbjct: 143 SVAAASVLAKVARDRLMAELGAQHEDFAFAANAGYPSPAHKTALAERGPTPYHRLSW 199 >gi|308190329|ref|YP_003923260.1| ribonuclease H [Mycoplasma fermentans JER] gi|319777726|ref|YP_004137377.1| ribonuclease [Mycoplasma fermentans M64] gi|307625071|gb|ADN69376.1| ribonuclease H [Mycoplasma fermentans JER] gi|318038801|gb|ADV35000.1| Ribonuclease [Mycoplasma fermentans M64] Length = 198 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 68/192 (35%), Positives = 110/192 (57%), Gaps = 8/192 (4%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEK 74 EK +P + G+DE GRG AGP+VV +I+ N N P I DSK++S K+REE E Sbjct: 5 EKENYPDTKLIVGLDEAGRGCCAGPLVVGCVIMPQNFNHPL-IKDSKQLSQKQREEALEI 63 Query: 75 ITSSAIISISSA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I +AI ++++ + Q +D+ N +A+ + + L P + D I D+ Sbjct: 64 ILENAIETVTTIINAQEVDQLNPKQASRIGMQRCINKLNTKPELVITDFEKI-NDINIPQ 122 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++KGD +S+++AAASI+AKVTRD +M KK+P Y F + GY T +H+ + + G Sbjct: 123 INLVKGDQLSINVAAASILAKVTRDLIMVGIDKKFPMYNFKKNKGYCTKEHEAAMSQYGI 182 Query: 194 SCIHRLTFRPLR 205 HR +++ ++ Sbjct: 183 CEFHRKSYKNVK 194 >gi|182416696|ref|ZP_02948097.1| ribonuclease HII [Clostridium butyricum 5521] gi|237668559|ref|ZP_04528543.1| ribonuclease HII (RNase HII) [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379458|gb|EDT76951.1| ribonuclease HII [Clostridium butyricum 5521] gi|237656907|gb|EEP54463.1| ribonuclease HII (RNase HII) [Clostridium butyricum E4 str. BoNT E BL5262] Length = 273 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 82/187 (43%), Positives = 109/187 (58%), Gaps = 8/187 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITSSAI- 80 +AG+DEVGRG LAGP+V ++LD N + +NDSKK+ KREEL E I A+ Sbjct: 86 IAGVDEVGRGPLAGPIVACCVMLDLNVLDDELILYLNDSKKLKESKREELAEIIKEKAVC 145 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 IS S+ ID+ I A + +L + P L DG + + + + +VIKGD Sbjct: 146 FKISECSNYEIDEIGIGVANNKVFLESCNSLSIKPDLVLSDGY-LVKGIEIENKSVIKGD 204 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + S IAAASIIAKV RD LM+ KKY Y F+++ GY TAKH I+E G IHR + Sbjct: 205 TKSACIAAASIIAKVYRDNLMKEYAKKYSCYDFENNAGYGTAKHMNAIREHGKCEIHRNS 264 Query: 201 FRPLRNL 207 F L+NL Sbjct: 265 F--LKNL 269 >gi|160903112|ref|YP_001568693.1| ribonuclease H [Petrotoga mobilis SJ95] gi|160360756|gb|ABX32370.1| Ribonuclease H [Petrotoga mobilis SJ95] Length = 208 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 75/192 (39%), Positives = 106/192 (55%), Gaps = 15/192 (7%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELYEKITSSAI 80 + GIDE GRG LAGPV V A++++ G DSK +S K+RE Y +IT + Sbjct: 16 IIGIDEAGRGPLAGPVFVGAVVIESKKEGELLAKIG-KDSKSLSPKQRERRYFQITRNFK 74 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA-----LIDGRSIPEDLPCQAFA 135 + ++ Q ID+ NI KAT A+ +E +++ +A +IDG+ D Sbjct: 75 YYSNFSTSQLIDEINIFKATELAMIKLLE--KIVEENANDYYVIIDGKFFKLDYNYDC-- 130 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 ++KGD S I AASI+AK RD M H+ YP+YGF +H GYPT KH + IK+ G Sbjct: 131 IVKGDQTSPLIGAASIVAKYERDIYMNQLHELYPNYGFITHKGYPTRKHIESIKKYGIIS 190 Query: 196 IHRLTFRPLRNL 207 HR TF P++ Sbjct: 191 EHRKTFNPIKRF 202 >gi|319952346|ref|YP_004163613.1| ribonuclease h [Cellulophaga algicola DSM 14237] gi|319421006|gb|ADV48115.1| Ribonuclease H [Cellulophaga algicola DSM 14237] Length = 198 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 69/181 (38%), Positives = 102/181 (56%), Gaps = 7/181 (3%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSA 86 G DE GRG LAGPV AA++L N +NDSKK+S KR L I A+ +++ Sbjct: 13 GTDEAGRGCLAGPVTAAAVVLPENFTNTLLNDSKKLSEIKRFSLKPIIEEFALSFAVTHI 72 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA---VIKGDSIS 143 ID NI A++ A+ +V L R ++DG P + ++ +IKGD Sbjct: 73 EPLIIDDINILNASILAMQKSVLKLDTTARHIIVDGNRFK---PMKNYSYDCIIKGDGKY 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +SIAAASI+AK RD +M + H+++P Y + + GYPT +H+ I++ G + HR +FR Sbjct: 130 MSIAAASILAKTYRDEVMNVLHEEFPMYNWKQNKGYPTKEHRAAIRKYGITKYHRKSFRQ 189 Query: 204 L 204 L Sbjct: 190 L 190 >gi|71892067|ref|YP_277797.1| ribonuclease HII [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|97182291|sp|Q493B8|RNH2_BLOPB RecName: Full=Ribonuclease HII; Short=RNase HII gi|71796173|gb|AAZ40924.1| ribonuclease HII [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 217 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 85/206 (41%), Positives = 117/206 (56%), Gaps = 5/206 (2%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 SI + + E+ + K +AG+DE G G+L G V+ AA+IL G+ DSK ++ Sbjct: 6 SIVQVKNNEIPKTLSIKKFKLIAGVDESGCGSLVGSVIAAAVILHSIQPISGLADSKTLN 65 Query: 65 HKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KR LY+ I +A+ SI A ID+ NI +A L A+ AV NL V P LIDG Sbjct: 66 KNKRLNLYKNIIKNALAWSIGYADVTEIDRSNILEARLLAMKRAVHNLSVKPDLILIDGN 125 Query: 124 SIP--EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 P ++P Q F KGD+ I+AASIIAKVTRD+ M I K+YP YGF + GYPT Sbjct: 126 RSPGFTEIPYQCFN--KGDARIAIISAASIIAKVTRDQDMIILDKQYPKYGFAQNKGYPT 183 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207 H + + GP HR +F P++++ Sbjct: 184 FFHLKQLALYGPISQHRKSFAPVKHV 209 >gi|332878922|ref|ZP_08446637.1| ribonuclease HII [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683273|gb|EGJ56155.1| ribonuclease HII [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 198 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 69/186 (37%), Positives = 105/186 (56%), Gaps = 3/186 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL P+ + DSK+++ K+R++L I A+ ++ Sbjct: 12 AGTDEAGRGCLAGPVTAAAVILPPDFHNELLTDSKQLTEKQRDQLRPIIEREAVAYAVCH 71 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ID+ NI +A++ A++ A+ L V+P +DG V+KGD + Sbjct: 72 VLPAEIDELNILRASITAMHRAIAQLSVVPTFIAVDGNKFVRYAQIPYACVVKGDGKIQT 131 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR--P 203 IAAASI+AK RD M ++P+Y + + GYPT +H++ I E G + HR TF+ P Sbjct: 132 IAAASILAKTYRDAYMSDLALQFPEYHWQQNKGYPTPEHRRAIAEYGATPHHRKTFQLLP 191 Query: 204 LRNLSV 209 + LS+ Sbjct: 192 VEQLSL 197 >gi|319955897|ref|YP_004167160.1| rnase hii [Nitratifractor salsuginis DSM 16511] gi|319418301|gb|ADV45411.1| RNase HII [Nitratifractor salsuginis DSM 16511] Length = 205 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 72/183 (39%), Positives = 104/183 (56%), Gaps = 4/183 (2%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 E+ + + GIDE GRG LAGP+VVA +IL I G+ DSK++S ++RE+LY +I + Sbjct: 16 EEEAFTLCGIDEAGRGPLAGPLVVAGVIL-LRRIN-GLQDSKRLSAQEREKLYGRIVERS 73 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 + ID I + A+ VE L L DG S +P A ++K Sbjct: 74 RYHLVIIEASRIDDWGISRCLRKALEEIVEVLGGEGVHFLFDGNS-RYGVPGIA-TMVKA 131 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D ++AASI+AKVTRDR+M ++YP+YGF+ H GY TA+H + I+ G IHR Sbjct: 132 DGKVKEVSAASILAKVTRDRIMEALAREYPEYGFEEHKGYGTARHLEAIERFGCCPIHRR 191 Query: 200 TFR 202 +F+ Sbjct: 192 SFQ 194 >gi|309775665|ref|ZP_07670664.1| ribonuclease HII [Erysipelotrichaceae bacterium 3_1_53] gi|308916571|gb|EFP62312.1| ribonuclease HII [Erysipelotrichaceae bacterium 3_1_53] Length = 207 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 73/194 (37%), Positives = 106/194 (54%), Gaps = 4/194 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E ++ + GIDE GRG +AGP+VVAA+ P I DSKK+S KKR L+ Sbjct: 6 EYEQAWWQQGKTCIVGIDEAGRGPIAGPLVVAAVAFPPGYFHEEIYDSKKLSDKKRRALF 65 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + A I+ ID+ NI++AT +A+ E + L D +P + Sbjct: 66 QDVIHQAKEYHIAIIEPAIIDELNIYRATQNAMQTLSEQFS-MADGVLTDAMPLPGNTK- 123 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +++KGD S+SIAAASI+AKVTRD +M K+YP YGF H GYPT H + + Sbjct: 124 DVISLVKGDQKSVSIAAASILAKVTRDCIMEAYDKQYPQYGFARHKGYPTKAHIEALHTY 183 Query: 192 G-PSCIHRLTFRPL 204 G ++R ++ P+ Sbjct: 184 GVVKGLYRESYGPV 197 >gi|218245925|ref|YP_002371296.1| Ribonuclease H [Cyanothece sp. PCC 8801] gi|257058973|ref|YP_003136861.1| ribonuclease H [Cyanothece sp. PCC 8802] gi|218166403|gb|ACK65140.1| Ribonuclease H [Cyanothece sp. PCC 8801] gi|256589139|gb|ACV00026.1| Ribonuclease H [Cyanothece sp. PCC 8802] Length = 205 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 80/183 (43%), Positives = 112/183 (61%), Gaps = 5/183 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI- 80 +AG+DEVGRG L GPVV A +++ ++ + G+ DSK++S KKR +L ++I A Sbjct: 14 IAGVDEVGRGTLFGPVVAAVVVIPVSSTTYLQEIGVKDSKQLSAKKRLKLAQEIKIVAKG 73 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 IS AS + ID+ NI +A+L A+ AV +L V P L+DGR DL +I GD Sbjct: 74 YHISYASVKEIDRLNILQASLLAMKRAVLHLSVEPAICLVDGRQKIPDLTIPQQTIIGGD 133 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 +S IAAASI+AKV RD L+ KYP Y ++ GY T KH+ +++ G S HRL+ Sbjct: 134 RLSPIIAAASILAKVWRDELIIRLDAKYPQYDLANNKGYGTLKHRLALEKYGVSPQHRLS 193 Query: 201 FRP 203 FRP Sbjct: 194 FRP 196 >gi|313681315|ref|YP_004059053.1| RNAase hii [Sulfuricurvum kujiense DSM 16994] gi|313154175|gb|ADR32853.1| RNase HII [Sulfuricurvum kujiense DSM 16994] Length = 182 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 73/183 (39%), Positives = 97/183 (53%), Gaps = 18/183 (9%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + GIDE GRG LAGP+ +A +IL NN G+NDSKK++ KKRE LYE I ++I I+ Sbjct: 3 LCGIDEAGRGPLAGPLTIAGVIL--NNPIEGLNDSKKLTEKKRESLYELICENSIYHIAR 60 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV------IKG 139 ID+ + + + + L L DG S F V +K Sbjct: 61 FDAAQIDELGLSQCLATGLREIMSALG--EADYLYDGNS--------KFGVSGLRTMVKA 110 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D+ ++AASI+AKVTRDR M YP YGFD H GY A H + I++ G IHR Sbjct: 111 DATVPEVSAASILAKVTRDREMIQLASLYPQYGFDGHKGYGCAAHIEAIRQYGYCEIHRK 170 Query: 200 TFR 202 TF+ Sbjct: 171 TFK 173 >gi|313623979|gb|EFR94078.1| ribonuclease HII [Listeria innocua FSL J1-023] Length = 261 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 81/185 (43%), Positives = 111/185 (60%), Gaps = 3/185 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 +AG+DEVGRG LAGPVV AA+IL + GINDSK+++ KR+ L+E I AI Sbjct: 73 IAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLNEAKRDMLFEVIKKEAISIGIG 132 Query: 86 ASHQYIDKH-NIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 I NI++AT A+ A+ L P LID ++P ++IKGD+ S+ Sbjct: 133 IIDHDIIDQVNIYEATKIAMREALVKLNPAPDFVLID--AMPLKYSEAELSLIKGDTKSI 190 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASIIAKVTRDR+M+ + YP Y F +++GY T KH + G IHRL+F P+ Sbjct: 191 SIAAASIIAKVTRDRMMQQYDELYPGYDFANNMGYGTKKHLNGLDTIGICPIHRLSFSPV 250 Query: 205 RNLSV 209 + + Sbjct: 251 KEAKI 255 >gi|86132077|ref|ZP_01050673.1| Ribonuclease HII [Dokdonia donghaensis MED134] gi|85817411|gb|EAQ38591.1| Ribonuclease HII [Dokdonia donghaensis MED134] Length = 212 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 72/185 (38%), Positives = 101/185 (54%), Gaps = 8/185 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSA 86 G DE GRG LAGPV AA++L + I + DSK+++ KKR+ L I AI S S Sbjct: 14 GTDEAGRGCLAGPVTAAAVMLPDSFINEILTDSKQLTEKKRDLLKPIIEQQAIAYSFSHV 73 Query: 87 SHQYIDKHNIHKATLDAIYHAVENL-------QVIPRSALIDGRSIPEDLPCQAFAVIKG 139 + ID NI A++ A++ ++E + Q P+ L+DG VIKG Sbjct: 74 MMEEIDDINILNASITAMHRSIEGMISTLSRKQKKPQHILVDGNRFKPFTGLDHTTVIKG 133 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D L IAAASIIAK RD M H++YP Y + + GYPT +H++ I+ G + HR Sbjct: 134 DGKYLPIAAASIIAKTERDLFMDRIHEEYPMYNWKKNKGYPTKEHREAIRTYGITKYHRK 193 Query: 200 TFRPL 204 +F+ L Sbjct: 194 SFKLL 198 >gi|237785759|ref|YP_002906464.1| Ribonuclease HII [Corynebacterium kroppenstedtii DSM 44385] gi|237758671|gb|ACR17921.1| Ribonuclease HII [Corynebacterium kroppenstedtii DSM 44385] Length = 261 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 78/203 (38%), Positives = 112/203 (55%), Gaps = 12/203 (5%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFG-INDSKKI 63 +P+ +E +A+V+ + PVAG+DE GRGA GP+ +AA IL I P + DSKK+ Sbjct: 50 MPQARTYE-DALVKA-GLGPVAGVDEAGRGACCGPMAIAACILPAKPIHPLDKLTDSKKL 107 Query: 64 SHKKREELYEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 S RE+L+ I SA +I I +A IDK+ + + + AV L P L Sbjct: 108 SPTMREKLFPIIKDSAESWSVILIPAAD---IDKYGVQAMNIAGMRRAVGVLDQRPHYVL 164 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 D + + L +I GDS + IAAAS++AKVTRDR M ++YP YG + H GY Sbjct: 165 TDAMRV-DGLTQPHLPIIGGDSAARCIAAASVLAKVTRDRYMCDLAERYPGYGLEKHKGY 223 Query: 180 PTAKHQQVIKEKGPSCIHRLTFR 202 TA+H ++ G + HR T+R Sbjct: 224 GTAQHIDAVRLHGGTPEHRYTYR 246 >gi|229496858|ref|ZP_04390566.1| ribonuclease HII [Porphyromonas endodontalis ATCC 35406] gi|229316176|gb|EEN82101.1| ribonuclease HII [Porphyromonas endodontalis ATCC 35406] Length = 198 Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 73/176 (41%), Positives = 103/176 (58%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRG+L G V AA+IL + +NDSKK++ + R L +I A+ ++ Sbjct: 14 CGCDEAGRGSLVGDVFAAAVILPEDFCLPELNDSKKLTERTRYRLRPQIEEQAVAWAVGR 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS + ID +NI A+ A++ A+ L + P+ LIDG L ++KGDS S Sbjct: 74 ASAEEIDTYNILHASFLAMHRAIAALGITPQRLLIDGNHFDPYLDIPHECIVKGDSRLAS 133 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M AHK++P YG+D + GYPT H+Q I++ G S + R TF Sbjct: 134 IAAASILAKTYRDDYMLAAHKRFPVYGWDRNKGYPTPAHRQAIEKMGHSPLQRFTF 189 >gi|163846616|ref|YP_001634660.1| ribonuclease HII [Chloroflexus aurantiacus J-10-fl] gi|222524413|ref|YP_002568884.1| ribonuclease HII [Chloroflexus sp. Y-400-fl] gi|189043577|sp|A9WIH1|RNH2_CHLAA RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807970|sp|B9LAL2|RNH2_CHLSY RecName: Full=Ribonuclease HII; Short=RNase HII gi|163667905|gb|ABY34271.1| Ribonuclease H [Chloroflexus aurantiacus J-10-fl] gi|222448292|gb|ACM52558.1| Ribonuclease H [Chloroflexus sp. Y-400-fl] Length = 212 Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 83/202 (41%), Positives = 118/202 (58%), Gaps = 9/202 (4%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN-----NIPFGINDSKKIS 64 P +E ++ + +AGIDE GRG AGPVV AA++L P ++ G+NDSK+++ Sbjct: 3 PDLSIEHDLQRRGYANLAGIDEAGRGCWAGPVVAAAVVLSPAVYRQPDLLAGVNDSKQLT 62 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 RE +Y I + A+ + + ID + I AT A+ A+ L + +ID Sbjct: 63 AGARERIYTSIQTHALGVGVGIVPAFLIDAYGILPATRLAMIQALLALPCAVDALIIDAV 122 Query: 124 SIPE-DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 +P LP A+++GD SLSIAAASIIAKVTRDRLM A +P YGF H GY TA Sbjct: 123 QLPGISLP--QTALVRGDERSLSIAAASIIAKVTRDRLMATADHCFPHYGFALHKGYGTA 180 Query: 183 KHQQVIKEKGPSCIHRLTFRPL 204 H++ + + GPS +HR TF+P+ Sbjct: 181 VHRRALAQYGPSPLHRRTFQPV 202 >gi|323343781|ref|ZP_08084008.1| ribonuclease HII [Prevotella oralis ATCC 33269] gi|323095600|gb|EFZ38174.1| ribonuclease HII [Prevotella oralis ATCC 33269] Length = 212 Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 74/183 (40%), Positives = 108/183 (59%), Gaps = 5/183 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK++S K R EL +I A ++ Sbjct: 23 AGCDEAGRGCLAGSVYAAAVILPKDYDNPLLNDSKQLSVKLRYELRSQIERDATAWAVGI 82 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIP-EDLPCQAFAVIKGDSIS 143 + + ID+ NI KA+ A++ A++ L V P++ ++DG IP +DLP A ++KGD Sbjct: 83 VTPEEIDRINILKASFLAMHRALDQLAVRPQAVIVDGNLFIPYQDLPYTA--IVKGDGKY 140 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AK RD M +YP Y + + GYPT+KH+ I+ G + HR ++ Sbjct: 141 QAIAAASILAKTYRDDYMEELALEYPQYDWQHNKGYPTSKHRAAIRLHGITPYHRKSYNL 200 Query: 204 LRN 206 L N Sbjct: 201 LGN 203 >gi|330752803|emb|CBL88322.1| ribonuclease HII [uncultured Dokdonia sp.] Length = 212 Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 72/185 (38%), Positives = 101/185 (54%), Gaps = 8/185 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSA 86 G DE GRG LAGPV AA++L + I + DSK+++ KKR+ L I AI S S Sbjct: 14 GTDEAGRGCLAGPVTAAAVMLPDSFINEILTDSKQLTEKKRDLLKPIIEQQAIAYSFSHV 73 Query: 87 SHQYIDKHNIHKATLDAIYHAVENL-------QVIPRSALIDGRSIPEDLPCQAFAVIKG 139 + ID NI A++ A++ ++E + Q P+ L+DG VIKG Sbjct: 74 MMEEIDDINILNASITAMHRSIEGMIGTLSRKQKKPQHILVDGNRFKPFTGIDHTTVIKG 133 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D L IAAASIIAK RD M H++YP Y + + GYPT +H++ I+ G + HR Sbjct: 134 DGKYLPIAAASIIAKTERDLFMDRIHEEYPMYNWKKNKGYPTKEHREAIRTYGITKYHRK 193 Query: 200 TFRPL 204 +F+ L Sbjct: 194 SFKLL 198 >gi|227824335|ref|ZP_03989167.1| ribonuclease HII [Acidaminococcus sp. D21] gi|226904834|gb|EEH90752.1| ribonuclease HII [Acidaminococcus sp. D21] Length = 270 Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 82/202 (40%), Positives = 119/202 (58%), Gaps = 10/202 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREE 70 E E + E+ VAG DE GRG LAGP+V AA+IL P+ I G+NDSKK+ K+RE Sbjct: 56 MEPERIFWEQGFVHVAGTDEAGRGPLAGPLVTAAVIL-PHEIDLPGLNDSKKVPPKRREA 114 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY++I A+ +++ Q ID NI++A ++ + +L P +AL D ++P L Sbjct: 115 LYDEILQQALAVTVRILGPQEIDTLNIYQAAKQSMQMCLTHLSAAPDAALTD--AMPLSL 172 Query: 130 ---PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 P + + GD+ S +IAAASIIAKVTRDR+M + YP YGF S+ GY + H Sbjct: 173 VGIPVKDL--VHGDARSAAIAAASIIAKVTRDRIMVELDQTYPGYGFSSNKGYGSKAHLD 230 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 + G + HR T+ P++ L+ Sbjct: 231 ALAALGVTPWHRRTYEPIKGLA 252 >gi|123966915|ref|YP_001011996.1| ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9515] gi|166226637|sp|A2BYM8|RNH2_PROM5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|123201281|gb|ABM72889.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9515] Length = 209 Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 75/185 (40%), Positives = 102/185 (55%), Gaps = 5/185 (2%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS-SAIIS 82 GIDEVGRGA+ GPV AA++L N G+ DSKK++ KKR+ L KI S S+ S Sbjct: 24 GIDEVGRGAVFGPVFSAAVVLTEKNGYTLKQLGVTDSKKLTEKKRKLLLPKIISLSSDYS 83 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + +S + ID+ I AT ++ A++ L+ P +IDG +I GDS Sbjct: 84 LGQSSAREIDQLGIRYATELSMIRAIKKLKSKPYEVIIDGPLSLRLWKSHQRNIIAGDSK 143 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SIAAASI+AKVTRD LM KK+ Y + GY T +H +K G + +HR +F Sbjct: 144 FTSIAAASIVAKVTRDFLMERLEKKFSGYFIFKNKGYGTKEHLLSLKANGVTNLHRKSFL 203 Query: 203 PLRNL 207 NL Sbjct: 204 TKLNL 208 >gi|320536890|ref|ZP_08036883.1| ribonuclease HII [Treponema phagedenis F0421] gi|320146273|gb|EFW37896.1| ribonuclease HII [Treponema phagedenis F0421] Length = 199 Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 82/193 (42%), Positives = 105/193 (54%), Gaps = 13/193 (6%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81 M + GIDE GRG LAGPV AA+IL P+ +NDSKK+S +KRE I + A+ I Sbjct: 1 MTLICGIDEAGRGPLAGPVTAAAVILPPDFASTLLNDSKKLSPQKREACRALIQAQALFI 60 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENL--QVIP---RSA----LIDGRSIPEDLPCQ 132 A H ID NI +ATL A+ A ++L +V+ R+A ++DG +P+ L Sbjct: 61 GEGRADHIEIDAINILQATLLAMKRAFDDLYQKVLTSECRAASIRIIVDGNKLPDFLNPS 120 Query: 133 AFAVIKGDSISL---SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A + AASIIAK TRD M KKYP YG++ H GY TA H Q IK Sbjct: 121 IIAAAAEPKADAKYPEVMAASIIAKTTRDMEMLEWAKKYPQYGYEKHKGYCTAAHVQAIK 180 Query: 190 EKGPSCIHRLTFR 202 G S I R TF+ Sbjct: 181 NFGFSPIQRKTFK 193 >gi|313901245|ref|ZP_07834733.1| ribonuclease HII [Clostridium sp. HGF2] gi|312954203|gb|EFR35883.1| ribonuclease HII [Clostridium sp. HGF2] Length = 207 Score = 114 bits (285), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 71/194 (36%), Positives = 110/194 (56%), Gaps = 4/194 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + ++ + GIDE GRG +AGP+VVAA+ P I DSKK+S KKR L+ Sbjct: 6 EYEQVWWQQGKRCIVGIDEAGRGPIAGPLVVAAVAFPPGYSHPEIYDSKKLSDKKRRALF 65 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++ + A+ I + ID+ NI++AT A+ + ++ L D +P + Sbjct: 66 HEVVAQALEYHIRIIEPKIIDELNIYRATQRAM-QDISDMFAHADGVLTDAMPLPHN-ER 123 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +++KGD S+SIAAASI+AKVTRD +M ++YP YGF H GYPT H + + Sbjct: 124 DVISLVKGDQKSVSIAAASILAKVTRDCMMEAYDRQYPQYGFARHKGYPTKAHIEALHTY 183 Query: 192 GP-SCIHRLTFRPL 204 G + ++R ++ P+ Sbjct: 184 GVITGLYRESYGPV 197 >gi|283852127|ref|ZP_06369401.1| Ribonuclease H [Desulfovibrio sp. FW1012B] gi|283572517|gb|EFC20503.1| Ribonuclease H [Desulfovibrio sp. FW1012B] Length = 211 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/187 (42%), Positives = 111/187 (59%), Gaps = 12/187 (6%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAII-SI 83 V GIDE GRG LAGPVV AA++L + +P G+ DSKK+S KR+ L I A+ + Sbjct: 12 VVGIDEAGRGCLAGPVVAAAVVLPEACQLP-GLTDSKKLSATKRDRLAPAIKVQAVAWGL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIP-------EDLPCQAFA 135 A +D+ NI +AT A+ AV ++ P IDG + IP ++ P Q A Sbjct: 71 GVAWPAEVDRINILQATFAAMARAVRAMRAAPTVLRIDGDKRIPAAYLNFLDEAPVQE-A 129 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 +I GD +I+AASI+AK +RDR+M + +++P YGF+ H GY A H +++ GP Sbjct: 130 IIGGDLTVPAISAASILAKTSRDRMMTVFARQFPGYGFEGHKGYGVAAHLAALRQLGPCR 189 Query: 196 IHRLTFR 202 IHRLTFR Sbjct: 190 IHRLTFR 196 >gi|160915179|ref|ZP_02077392.1| hypothetical protein EUBDOL_01187 [Eubacterium dolichum DSM 3991] gi|158432978|gb|EDP11267.1| hypothetical protein EUBDOL_01187 [Eubacterium dolichum DSM 3991] Length = 208 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/202 (37%), Positives = 112/202 (55%), Gaps = 14/202 (6%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E ++ + GIDE GRG +AGP+VVAA+ + I DSKK+S KKRE L+ Sbjct: 6 EYEKAWYKEGKQAIVGIDEAGRGPIAGPLVVAAVSFPDDYDDDEIYDSKKLSEKKRELLF 65 Query: 73 EKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 KI A I+ + + + ID NI++AT +A+ + Q+I L D +P Sbjct: 66 RKIIKEAREYHILIVDTKT---IDTENIYRATQNAMQRLCDEFQMID-GVLTDAMPLP-- 119 Query: 129 LPCQ--AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 C+ +++KGD S+SIAAASI+AKVTRD +M +YP YGF H GYPT H + Sbjct: 120 -FCKQDCISLVKGDQKSVSIAAASILAKVTRDHIMMAYDLQYPQYGFAKHKGYPTKVHLE 178 Query: 187 VIKEKGP-SCIHRLTFRPLRNL 207 + G ++R ++ P+ + Sbjct: 179 ALHRYGVIDGLYRHSYGPVAKM 200 >gi|187933770|ref|YP_001885450.1| ribonuclease HII [Clostridium botulinum B str. Eklund 17B] gi|187721923|gb|ACD23144.1| ribonuclease HII [Clostridium botulinum B str. Eklund 17B] Length = 271 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/203 (41%), Positives = 116/203 (57%), Gaps = 16/203 (7%) Query: 14 LEAMVREKNMWP----------VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGIND 59 ++ M R K+M+ +AG+DEVGRG LAGP+V A+ILD N I +ND Sbjct: 65 IKEMSRVKSMYEFDKSFGEFKYIAGVDEVGRGPLAGPIVACAVILDLNVIDEELILYLND 124 Query: 60 SKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 SKK++H KREEL I A+ IS +S++ ID+ I + + + NL V P Sbjct: 125 SKKLNHTKREELSAIIKEKALAYYISLSSNKEIDERGIAFSNNNVFLDSCNNLSVRPDLV 184 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 L DG + F +IKGD+ S SIAAASI+AKV RD LM+ KYP Y F++++G Sbjct: 185 LSDGYLVKNIEITNKF-IIKGDTKSASIAAASILAKVYRDNLMKEYSIKYPHYDFENNMG 243 Query: 179 YPTAKHQQVIKEKGPSCIHRLTF 201 Y T KH +K+ G IHR +F Sbjct: 244 YGTPKHIDGLKKYGKCEIHRNSF 266 >gi|146299683|ref|YP_001194274.1| ribonuclease HII [Flavobacterium johnsoniae UW101] gi|189043596|sp|A5FIL7|RNH2_FLAJO RecName: Full=Ribonuclease HII; Short=RNase HII gi|146154101|gb|ABQ04955.1| Ribonuclease H [Flavobacterium johnsoniae UW101] Length = 221 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/204 (37%), Positives = 109/204 (53%), Gaps = 31/204 (15%) Query: 27 AGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 G DE GRG LAGPV AA+IL NNI +NDSK++S K R L I A+ S Sbjct: 13 TGTDEAGRGCLAGPVTAAAVILPSVFENNI---LNDSKQLSEKARALLKPIIEEQALCFS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDL------------ 129 ++ ID+ NI A++ + + L+ IP ++DG RS+ L Sbjct: 70 VTHLFPDEIDEINILNASMKGMQECILKLKHIPEYIIVDGNRSLNAKLGLKNTFGKQFSK 129 Query: 130 ---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 P Q+ +IKGD+ LSIAAASI+AK RD M H+++P Y + + GYP Sbjct: 130 EEIELLKSIPNQS--IIKGDAKFLSIAAASILAKTYRDEYMDQIHEEFPMYNWKQNKGYP 187 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPL 204 T +H++ IK+ G + HR++FR L Sbjct: 188 TKEHREAIKKYGTTKYHRMSFRLL 211 >gi|326387694|ref|ZP_08209300.1| ribonuclease H [Novosphingobium nitrogenifigens DSM 19370] gi|326207740|gb|EGD58551.1| ribonuclease H [Novosphingobium nitrogenifigens DSM 19370] Length = 198 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/187 (39%), Positives = 104/187 (55%), Gaps = 9/187 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 V G+DE GRG LAGPVV AA+IL P G+ DSKK++ ++R L I + + Sbjct: 7 VVGVDEAGRGPLAGPVVAAAVILGAG-APQGLADSKKLTARRRAWLEVGIKETCRWGLGV 65 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENL----QVIPRSALIDGRSIPED----LPCQAFAVI 137 ID+ NI AT+ A+ AV +L + LIDG P A A++ Sbjct: 66 VEADEIDRINIFAATMKAMTLAVADLLDRDGGVVEMVLIDGNKTPAGRDPGWVWPARAIV 125 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD+ +I+AASI+AK RDR+MR A +K+P YG++ + GY T +H ++E GP H Sbjct: 126 GGDATEAAISAASILAKEHRDRIMRDAAQKWPQYGWERNAGYGTPEHLAALREHGPCVFH 185 Query: 198 RLTFRPL 204 R +F P+ Sbjct: 186 RRSFAPV 192 >gi|256379913|ref|YP_003103573.1| ribonuclease H [Actinosynnema mirum DSM 43827] gi|255924216|gb|ACU39727.1| Ribonuclease H [Actinosynnema mirum DSM 43827] Length = 258 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 70/193 (36%), Positives = 109/193 (56%), Gaps = 4/193 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKRE 69 + +A + + + PVAG+DE GRGA AGP+VVAA +L + G+ DSK ++ R+ Sbjct: 17 WAFQAALDRRGLGPVAGVDEAGRGACAGPLVVAAAVLRTGDAARFAGLTDSKLLTAAARD 76 Query: 70 ELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +++ + A+ ++ +D +H A ++ + AV L P L DG +P Sbjct: 77 RMHDLVLERALDHAVVVVPADEVDAIGVHVANVEGMRRAVARLGTHPGYVLTDGFPVP-G 135 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L ++KGD ++ +AAAS++AKVTRDR+M H++ P YGFD H GY TA H + Sbjct: 136 LTAPNAPLVKGDRVAACVAAASVLAKVTRDRIMAELHEELPVYGFDVHKGYGTAAHTAAL 195 Query: 189 KEKGPSCIHRLTF 201 E GPS HR ++ Sbjct: 196 LEHGPSGQHRWSY 208 >gi|301167133|emb|CBW26712.1| ribonuclease HII [Bacteriovorax marinus SJ] Length = 227 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 83/212 (39%), Positives = 113/212 (53%), Gaps = 31/212 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN-----NIPF----GINDSKKISHKKRE------- 69 +AG DEVGRG LAGPVV +++D + N+ F GI DSKKIS KR+ Sbjct: 13 LAGCDEVGRGPLAGPVVGCCVLVDRDSLTVENVDFLLSHGITDSKKISATKRKKILKSLG 72 Query: 70 -ELYEKITSSAI---------ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 E YE + +++ S+ S++ ID+ NI +A+L A+ A + R+ L Sbjct: 73 IEKYELASKNSLTLNKNLKISFSVREISNESIDQLNILRASLKAMGDAFIDCFSGERTKL 132 Query: 120 -IDGRSIPEDLPCQAFA---VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 IDG DL + + VIKGDS S I ASIIAK RD LM KKYP YG + Sbjct: 133 LIDGNKYI-DLGLENVSEEFVIKGDSKSALIGLASIIAKEYRDNLMIEMGKKYPGYGLEK 191 Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 H GYPT H+ I + G + IHR +F+ ++ Sbjct: 192 HAGYPTKFHKDAISKLGVTPIHRKSFKGVKEF 223 >gi|251780020|ref|ZP_04822940.1| ribonuclease HII [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084335|gb|EES50225.1| ribonuclease HII [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 271 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/181 (45%), Positives = 108/181 (59%), Gaps = 6/181 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI- 80 VAG+DEVGRG LAGP+V ++ILD N I +NDSKK++H KREEL I A+ Sbjct: 87 VAGVDEVGRGPLAGPIVACSVILDLNVIDEELILYLNDSKKLNHIKREELAIIIKEKALA 146 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 SIS +S++ ID+ I + + NL + P L DG + F VIKGD Sbjct: 147 YSISLSSNKEIDERGIAYCNNNVFLDSCNNLSIKPELVLSDGYLVKNIDIANKF-VIKGD 205 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + S SIAAASI+AKV RD LM+ KYP Y F++++GY T KH +K+ G IHR + Sbjct: 206 TKSASIAAASILAKVYRDNLMKEYSIKYPHYDFENNMGYGTQKHIDGLKKYGKCEIHRNS 265 Query: 201 F 201 F Sbjct: 266 F 266 >gi|188588936|ref|YP_001920597.1| ribonuclease HII [Clostridium botulinum E3 str. Alaska E43] gi|188499217|gb|ACD52353.1| ribonuclease HII [Clostridium botulinum E3 str. Alaska E43] Length = 271 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/181 (45%), Positives = 108/181 (59%), Gaps = 6/181 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI- 80 VAG+DEVGRG LAGP+V ++ILD N I +NDSKK++H KREEL I A+ Sbjct: 87 VAGVDEVGRGPLAGPIVACSVILDLNVIDEELILYLNDSKKLNHIKREELAIIIKEKALA 146 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 SIS +S++ ID+ I + + NL + P L DG + F VIKGD Sbjct: 147 YSISLSSNKEIDERGIAYCNNNVFLDSCNNLSIKPELVLSDGYLVKNIDIANKF-VIKGD 205 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + S SIAAASI+AKV RD LM+ KYP Y F++++GY T KH +K+ G IHR + Sbjct: 206 TKSASIAAASILAKVYRDNLMKEYSIKYPHYDFENNMGYGTQKHIDGLKKYGKCEIHRNS 265 Query: 201 F 201 F Sbjct: 266 F 266 >gi|51892612|ref|YP_075303.1| ribonuclease HII [Symbiobacterium thermophilum IAM 14863] gi|81388972|sp|Q67PD4|RNH21_SYMTH RecName: Full=Ribonuclease HII 1; Short=RNase HII 1 gi|51856301|dbj|BAD40459.1| ribonuclease HII [Symbiobacterium thermophilum IAM 14863] Length = 259 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/186 (41%), Positives = 110/186 (59%), Gaps = 9/186 (4%) Query: 20 EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYE 73 E+ +W +AGIDEVGRG LAGPVV AA+IL P + GI ++K++S ++R ELY Sbjct: 59 ERQLWSMGYRHIAGIDEVGRGPLAGPVVAAAVIL-PGEVELPGIEEAKRLSDRRRMELYR 117 Query: 74 KITSSAIISISSASH-QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I A+ + ID+ ++ AT A+ AV +L V P LIDG +P ++ Sbjct: 118 RIREVAVAVGVGLVQPEGIDEASVVVATYKAMMKAVADLPVTPDYLLIDGVHLP-NVSQP 176 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 V+ G+++S SIAAA+++AKV RD M KYP YGF H GY T +H+ ++ G Sbjct: 177 QVPVVGGETLSCSIAAAAVVAKVVRDEYMVEMDAKYPAYGFAHHKGYGTPEHRLALERYG 236 Query: 193 PSCIHR 198 P IHR Sbjct: 237 PCPIHR 242 >gi|149185908|ref|ZP_01864223.1| Ribonuclease H [Erythrobacter sp. SD-21] gi|148830469|gb|EDL48905.1| Ribonuclease H [Erythrobacter sp. SD-21] Length = 211 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/187 (38%), Positives = 107/187 (57%), Gaps = 9/187 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + G+DE GRG LAGPVV AA++L P G++DSKK+S KR +L +I ++ Sbjct: 16 IVGVDEAGRGPLAGPVVAAAVVLC-KPCPGGLDDSKKLSAAKRSKLEPQIQRRCAWGLAV 74 Query: 86 ASHQYIDKHNIHKATLDAIYHA----VENLQVIPRSALIDGRSIP----EDLPCQAFAVI 137 + ID+ NI AT+ A+ A +E L P LIDG P E+ A A++ Sbjct: 75 VEPEVIDRLNIFGATMLAMTLATQRCIEALGAEPAEVLIDGNMTPHGRREEWRWPARAIV 134 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD I+AASI+AK RDR+M A K +P YG++++ GY + H + ++ GP+ +H Sbjct: 135 GGDGKEACISAASILAKEYRDRIMVEAAKAHPHYGWENNKGYGSKSHMEALRLHGPTPLH 194 Query: 198 RLTFRPL 204 R +F P+ Sbjct: 195 RRSFAPV 201 >gi|256819586|ref|YP_003140865.1| ribonuclease HII [Capnocytophaga ochracea DSM 7271] gi|256581169|gb|ACU92304.1| Ribonuclease H [Capnocytophaga ochracea DSM 7271] Length = 198 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 9/189 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL P+ + DSK+++ K+R L I S A+ ++ Sbjct: 12 AGTDEAGRGCLAGPVTAAAVILPPDFKNDLLTDSKQLTEKQRNLLRPIIESEAVAYAVCH 71 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF---AVIKGDSI 142 ID+ NI +A++ A++ A+ L P +DG +P Q V+KGD Sbjct: 72 VLPAEIDELNILRASITAMHRAIAQLSPTPEFIAVDGNKF---VPYQKIPYACVVKGDGK 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AK RD M +++P+Y + + GYPT +H++ I E G + HR TF+ Sbjct: 129 IQTIAAASILAKTYRDAYMEDLAQQFPEYHWQQNKGYPTPEHRKAIAEYGATEHHRKTFQ 188 Query: 203 --PLRNLSV 209 P+ LS+ Sbjct: 189 LLPVEQLSL 197 >gi|281424964|ref|ZP_06255877.1| ribonuclease HII [Prevotella oris F0302] gi|281400808|gb|EFB31639.1| ribonuclease HII [Prevotella oris F0302] Length = 223 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/186 (38%), Positives = 105/186 (56%), Gaps = 11/186 (5%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL P+ +NDSKK+S ++R L E+I A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPPDYDNPALNDSKKLSVRQRYALREQIEHDALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS-----IPEDLPCQA-----FA 135 A+ + ID+ NI A+ A++ A++ L++ P + ++DG + + LP Sbjct: 73 ATPEEIDEINILHASFLAMHRALDQLKIRPEAVIVDGNHFDPYVVGKGLPNAGKQLPHTC 132 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 VIKGD +IAAASI+AK RD M K YP Y ++ + GYPT KH I E G Sbjct: 133 VIKGDGKYQNIAAASILAKTYRDDYMTEQAKLYPFYDWEKNKGYPTKKHYAGIAEHGICE 192 Query: 196 IHRLTF 201 +HR ++ Sbjct: 193 LHRRSY 198 >gi|302522312|ref|ZP_07274654.1| ribonuclease HII [Streptomyces sp. SPB78] gi|302431207|gb|EFL03023.1| ribonuclease HII [Streptomyces sp. SPB78] Length = 233 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/180 (38%), Positives = 102/180 (56%), Gaps = 7/180 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE----ELYEKITSSAII 81 VAGIDEVGRGA AGPV V A + P G+ DSK ++ K+R EL + +T+ Sbjct: 23 VAGIDEVGRGAWAGPVSVCAAVTGLRRPPEGLTDSKLLTPKRRAALVVELEQWVTAH--- 79 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S+ AS + ID+ + A A A++ L V P ++DG P VIKGD Sbjct: 80 SLGHASPEEIDELGMTAALRLAAGRALDGLPVRPDWVILDGNHDYLGAPWNVRTVIKGDQ 139 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +S+AAAS++AKV RDRLM ++ D+ F ++ GY + H+ + E+GP+ HRL++ Sbjct: 140 SCVSVAAASVLAKVARDRLMAELGAQHEDFAFAANAGYHSPAHKTALAERGPTPYHRLSW 199 >gi|152989967|ref|YP_001355689.1| ribonuclease HII [Nitratiruptor sp. SB155-2] gi|151421828|dbj|BAF69332.1| ribonuclease HII [Nitratiruptor sp. SB155-2] Length = 182 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/180 (38%), Positives = 101/180 (56%), Gaps = 10/180 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + GIDE GRG LAGP+V+A ++ + ++DSKK+S + RE+LYEKI ++ +I Sbjct: 3 ICGIDEAGRGPLAGPLVMAGVVFTQR--VYKLDDSKKLSPQAREKLYEKIINATQYTIVI 60 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI--PEDLPCQAFAVIKGDSIS 143 + ID+ I + + L + + DG S E++ VIK D Sbjct: 61 IDNDTIDQIGISACISQGLKEIISALHA--KRYIFDGNSKFGVENIE----PVIKADQTI 114 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + AASI+AKVTRDR+M K+YP+YGF H GY T +H + I+ G S IHR +FRP Sbjct: 115 KEVMAASILAKVTRDRIMCEMDKEYPEYGFCKHKGYGTKEHIEAIQRYGFSPIHRKSFRP 174 >gi|318042659|ref|ZP_07974615.1| ribonuclease HII [Synechococcus sp. CB0101] Length = 200 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 72/185 (38%), Positives = 102/185 (55%), Gaps = 12/185 (6%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSSA-I 80 +AG+DEVGRG GPV A+IL G+ DSKK++ ++R +L I A Sbjct: 12 IAGVDEVGRGCWFGPVFAGAVILPASARSALAAAGLTDSKKLTARRRAQLVPLIQQHAES 71 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-ALIDGRSIPEDL---PCQAFAV 136 ++ AS + ID+ I AT A+ A++ L P L+DG +P L P Q V Sbjct: 72 WALGQASAREIDQVGIRAATERAMLRALQRLSAPPPGLVLVDG-VLPLRLWEGPQQT--V 128 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 ++GDS L IAAAS++AK RD L+ +YP YG + H GY TA H+ + E GP+ + Sbjct: 129 VRGDSEHLEIAAASVLAKQARDALITRLAARYPAYGLERHAGYGTALHRAAVLEAGPTPL 188 Query: 197 HRLTF 201 HR +F Sbjct: 189 HRRSF 193 >gi|33862058|ref|NP_893619.1| ribonuclease HII and HIII [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|39932293|sp|Q7UZZ2|RNH2_PROMP RecName: Full=Ribonuclease HII; Short=RNase HII gi|33634276|emb|CAE19961.1| Ribonuclease HII and HIII [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 209 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 72/185 (38%), Positives = 103/185 (55%), Gaps = 5/185 (2%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS-SAIIS 82 GIDEVGRG++ GPV A++L + G+NDSKK++ KKR++ + KI + S+ + Sbjct: 24 GIDEVGRGSVFGPVFSVAVVLSKKSGLTLKKLGVNDSKKLTPKKRKDFFPKIIALSSDYA 83 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + +S + ID I AT ++ AV+ L+ +P LIDG +I GDS Sbjct: 84 LGQSSVREIDLLGIRHATELSMIRAVKKLKHMPSELLIDGPLTLRLWEGNQRNIISGDSK 143 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +SIA ASIIAKV RD LM KYP Y + GY T +H +K+ G + +HR +F Sbjct: 144 FISIATASIIAKVMRDSLMERLESKYPGYFIFKNKGYGTKQHFSSLKKHGLTNLHRKSFL 203 Query: 203 PLRNL 207 NL Sbjct: 204 NKLNL 208 >gi|311898762|dbj|BAJ31170.1| putative ribonuclease HII [Kitasatospora setae KM-6054] Length = 227 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/186 (37%), Positives = 105/186 (56%), Gaps = 7/186 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY----EKITSSAII 81 VAG+DEVGRGA AGPV+V A + P G+ DSK ++ ++R L E +T+ AI Sbjct: 22 VAGLDEVGRGAWAGPVMVGAAVTGLRRPPEGLTDSKLLTERRRAALAPVLEEWVTAYAI- 80 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 SAS D+ + A A A+E L V P + ++DG+ P + VIKGD Sbjct: 81 --GSASALECDELGMTAALRLAAVRALEELPVRPDAVILDGKHDYLGGPWRVRTVIKGDQ 138 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + ++AAS++AKV RD LM +P++ F + GYP+ H+ ++E GP+ HRL++ Sbjct: 139 SCVCVSAASVLAKVRRDALMAELGSGHPEFAFAENAGYPSPTHRAALEEHGPTEHHRLSW 198 Query: 202 RPLRNL 207 L +L Sbjct: 199 AYLDDL 204 >gi|302338381|ref|YP_003803587.1| ribonuclease H [Spirochaeta smaragdinae DSM 11293] gi|301635566|gb|ADK80993.1| Ribonuclease H [Spirochaeta smaragdinae DSM 11293] Length = 190 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 73/180 (40%), Positives = 102/180 (56%), Gaps = 6/180 (3%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGI-NDSKKISHKKREELYEKITSSAIISISSA 86 GIDE GRG LAGPV AA+IL P P G+ +DSKK+S KR ++I SS + Sbjct: 8 GIDEAGRGPLAGPVTAAAVIL-PAAFPVGLLDDSKKLSPAKRNIALKEILSSCSYGVGWV 66 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL----IDGRSIPEDLPCQAFAVIKGDSI 142 + ID+ NIH A+L A+ A E + R+ + +DG+ P+ + A+I+GD Sbjct: 67 WPEEIDRINIHNASLLAMKRAFEAIDQKARTLVQIVQVDGKFPPKLDHPRIEAIIRGDQT 126 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I AASI+AK RDR M P + F+ H GYPT H+++ ++ G S IHR +FR Sbjct: 127 HPHIQAASILAKEARDRWMIRYSWIEPAWHFERHKGYPTKLHRELCRQYGLSEIHRKSFR 186 >gi|305680699|ref|ZP_07403506.1| ribonuclease HII [Corynebacterium matruchotii ATCC 14266] gi|305658904|gb|EFM48404.1| ribonuclease HII [Corynebacterium matruchotii ATCC 14266] Length = 236 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 69/194 (35%), Positives = 99/194 (51%), Gaps = 4/194 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKR 68 H E + + + PVAG+DE GRGA AGP+ +AA IL P + + DSKK+S R Sbjct: 7 HRTFEVALHQAGLGPVAGVDEAGRGACAGPITIAACILPPQPLAALSRLTDSKKLSAATR 66 Query: 69 EELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 L+ I A+ SI S ID++ I A + + V L V P L D + + Sbjct: 67 AALFPLIQHHAVAWSILHISAADIDQYGIQHANVFGMRRVVALLDVQPGYVLTDALKV-D 125 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 C +I GD+ + I+AAS++AK RD +M + YP Y F SH GY T H Sbjct: 126 GFACSYLPIIGGDAAARCISAASVLAKHARDLVMAELAETYPRYEFASHKGYGTKVHMTA 185 Query: 188 IKEKGPSCIHRLTF 201 ++ G S +HR ++ Sbjct: 186 VRRYGASPVHRYSY 199 >gi|145593863|ref|YP_001158160.1| ribonuclease HII [Salinispora tropica CNB-440] gi|189043656|sp|A4X4I2|RNH2_SALTO RecName: Full=Ribonuclease HII; Short=RNase HII gi|145303200|gb|ABP53782.1| RNase HII [Salinispora tropica CNB-440] Length = 270 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 73/196 (37%), Positives = 110/196 (56%), Gaps = 10/196 (5%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKRE 69 + LE ++ + VAG DE GRGA AGP+V AA IL P G+ DSK ++ RE Sbjct: 16 YALERALQRRGFRQVAGADEAGRGACAGPLVAAAAILPPGRRGEVDGLADSKLLTPASRE 75 Query: 70 ELYEKI----TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +Y ++ ++ A++ I +A +D +H L A+ A+ +L P L DG + Sbjct: 76 RVYAEVIARASAYAVVVIPAAE---VDLRGLHVCNLAAMRRALASLATPPEYVLTDGFGV 132 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 + L AV KGD ++ +AAAS++AKVTRDR+M ++P YGF H GY TA+H Sbjct: 133 -DGLDVPGLAVWKGDRVAACVAAASVLAKVTRDRIMVELDLEFPGYGFAEHKGYITAEHS 191 Query: 186 QVIKEKGPSCIHRLTF 201 ++E+GP HR ++ Sbjct: 192 AALRERGPCPEHRFSY 207 >gi|297569140|ref|YP_003690484.1| ribonuclease H [Desulfurivibrio alkaliphilus AHT2] gi|296925055|gb|ADH85865.1| Ribonuclease H [Desulfurivibrio alkaliphilus AHT2] Length = 218 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/182 (42%), Positives = 108/182 (59%), Gaps = 5/182 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS--SAIISI 83 VAGIDE GRG LAGPVV A ++L DSK++ + R L +I + + Sbjct: 30 VAGIDEAGRGPLAGPVVAACVVLPAGCEASRFRDSKQLKPELRCRLAAEIEALPGVYWGV 89 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPEDLPCQAFAVIKGDSI 142 + ID+ NI +A+L A+ AV L P L+DG+ +P LP QA +++GDS Sbjct: 90 GVVAPAEIDRLNILQASLLAMQKAVAALAAEPDFLLVDGKHQLPLPLPQQA--LVRGDSR 147 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 S SIAAASIIAKV RD +M H++YP Y F H GY TA+H ++++ GP IHR +F+ Sbjct: 148 SASIAAASIIAKVRRDEIMADYHRRYPQYNFHRHKGYGTAEHLHLLRQHGPCPIHRRSFK 207 Query: 203 PL 204 P+ Sbjct: 208 PV 209 >gi|124026648|ref|YP_001015763.1| ribonuclease HII and HIII [Prochlorococcus marinus str. NATL1A] gi|166226636|sp|A2C4T9|RNH2_PROM1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|123961716|gb|ABM76499.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. NATL1A] Length = 195 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 69/181 (38%), Positives = 104/181 (57%), Gaps = 5/181 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 +AG+DEVG+G L GPV AA+IL N + G+ DSKK+SH++R L I +++I Sbjct: 8 IAGVDEVGKGCLFGPVFAAAVILSKENEIELLNQGLKDSKKLSHRQRHNLVPLIKTNSIA 67 Query: 82 -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 +I AS + ID I AT A+ A+E P L+DG P + ++G+ Sbjct: 68 WTIGQASAREIDVIGIRDATEKAMLRALEKFSSPPDLILVDGILPIRLWPGKQKTQVRGE 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S SIAAAS++AK TRD L++ +KY YG + + GY T H+ + ++G + +HR + Sbjct: 128 SHFASIAAASVLAKETRDELIKRLARKYNCYGLEKNKGYGTEIHRTNLIKEGATKLHRKS 187 Query: 201 F 201 F Sbjct: 188 F 188 >gi|307325020|ref|ZP_07604224.1| Ribonuclease H [Streptomyces violaceusniger Tu 4113] gi|306889166|gb|EFN20148.1| Ribonuclease H [Streptomyces violaceusniger Tu 4113] Length = 233 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 68/177 (38%), Positives = 101/177 (57%), Gaps = 1/177 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 V GIDEVGRGA AGPV V A + P G+ DSK +S KKR L +++ S ++ Sbjct: 23 VVGIDEVGRGAWAGPVTVCAAVTGLRRPPTGLTDSKLLSPKKRTTLAQELHSWVTAHALG 82 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 +S + ID + A A A++ L V P + ++DG+ P VIKGD + Sbjct: 83 HSSPEEIDGLGMTAALRLAATRALDALPVRPDAVILDGKHDYLGTPWAVRTVIKGDQSCV 142 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 S+AAAS+IAKV RD +M ++ D+ F+ + GYP+ H+ ++E GP+ HRL++ Sbjct: 143 SVAAASVIAKVRRDAMMAELGAEHMDFCFEDNAGYPSPVHRAALRELGPTPHHRLSW 199 >gi|92112710|ref|YP_572638.1| RNase HII [Chromohalobacter salexigens DSM 3043] gi|122420710|sp|Q1R019|RNH2_CHRSD RecName: Full=Ribonuclease HII; Short=RNase HII gi|91795800|gb|ABE57939.1| RNase HII [Chromohalobacter salexigens DSM 3043] Length = 200 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 79/186 (42%), Positives = 111/186 (59%), Gaps = 4/186 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSK +S K+R L + I +A +++ Sbjct: 16 LAGVDEVGRGPLVGAVVAAAVILDPARPIEGLADSKTLSEKRRLALADAIREQAAACAVA 75 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-EDLPCQAFAVIKGDSIS 143 AS + ID NI AT A+ A++ L V L+DG +P +P Q V+KGD Sbjct: 76 EASAEEIDALNIFHATHLAMRRAIDALPVTAEYLLVDGNRMPGHHVPGQC--VVKGDRRH 133 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I AASI+AKVTRD M H+++P+YGF H GYPT +H ++ GP HR +F P Sbjct: 134 AAIGAASILAKVTRDAQMVALHERHPEYGFARHKGYPTREHLAALERLGPLEEHRRSFAP 193 Query: 204 LRNLSV 209 ++ + Sbjct: 194 VKQWQL 199 >gi|227504791|ref|ZP_03934840.1| ribonuclease HII [Corynebacterium striatum ATCC 6940] gi|227198641|gb|EEI78689.1| ribonuclease HII [Corynebacterium striatum ATCC 6940] Length = 213 Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/195 (37%), Positives = 102/195 (52%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREELY 72 E + + + PVAG+DE GRGA GP+ +AA IL IP + DSKK+S RE L+ Sbjct: 11 EVALSKAGLGPVAGVDEAGRGACCGPITIAACILPDKIIPELDKLTDSKKLSPATRERLF 70 Query: 73 EKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A+ S+ + IDK I A + + AV L V P L D +P +P Sbjct: 71 PIIKDKAVAWSVVHIDARDIDKRGIQHANVSGMRRAVARLDVRPHYVLSDALKVP-GMPA 129 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +I GD+ + IAAAS++AKV+RD +M YP YG H GY TA HQ I + Sbjct: 130 PQLPIIGGDAAARCIAAASVLAKVSRDHIMDELDVAYPGYGLAGHKGYGTAAHQAAIVKL 189 Query: 192 GPSCIHRLTFRPLRN 206 G + HR+ + + N Sbjct: 190 GATPEHRMGYANVAN 204 >gi|254431100|ref|ZP_05044803.1| ribonuclease HII [Cyanobium sp. PCC 7001] gi|197625553|gb|EDY38112.1| ribonuclease HII [Cyanobium sp. PCC 7001] Length = 201 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 69/181 (38%), Positives = 101/181 (55%), Gaps = 5/181 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA-I 80 AG+DEVGRG L GPV A++L G+ DSKK+S ++RE L I +A Sbjct: 14 CAGVDEVGRGCLFGPVFAGAVVLGAEAAAALTAQGLTDSKKLSARRREALLPLIREAAEA 73 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 ++ AS ID I +AT A+ A+ L P L+DG P + +++GD Sbjct: 74 WALGQASAAEIDGFGIRQATERAMQRALAKLPQPPALLLVDGVLPLRGWPGEQATLVRGD 133 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S + +IAAAS++AK RD+LMR ++P YG + H GY TA+H+ + GP+ +HR + Sbjct: 134 SRNAAIAAASVLAKQARDQLMRTLADRFPGYGLERHAGYGTAQHRAALLSLGPTALHRRS 193 Query: 201 F 201 F Sbjct: 194 F 194 >gi|299142243|ref|ZP_07035376.1| ribonuclease HII [Prevotella oris C735] gi|298576332|gb|EFI48205.1| ribonuclease HII [Prevotella oris C735] Length = 220 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/188 (39%), Positives = 106/188 (56%), Gaps = 15/188 (7%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL P+ +NDSKK+S ++R L E+I A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPPDYDNPALNDSKKLSVRQRYALREQIEHDALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG---------RSIP---EDLPCQA 133 A+ + ID+ NI A+ A++ A++ L+ P + ++DG R +P + LP Sbjct: 73 ATPEEIDEINILHASFLAMHRALDQLKKRPEAVIVDGNHFDPYVVGRGLPNAGKQLPHTC 132 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 VIKGD +IAAASI+AK RD M K YP Y ++ + GYPT KH I E G Sbjct: 133 --VIKGDGKYQNIAAASILAKTYRDDYMTEQAKLYPFYDWEKNKGYPTKKHYAGIAEHGI 190 Query: 194 SCIHRLTF 201 +HR ++ Sbjct: 191 CELHRRSY 198 >gi|332292284|ref|YP_004430893.1| Ribonuclease H [Krokinobacter diaphorus 4H-3-7-5] gi|332170370|gb|AEE19625.1| Ribonuclease H [Krokinobacter diaphorus 4H-3-7-5] Length = 212 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 70/185 (37%), Positives = 100/185 (54%), Gaps = 8/185 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSA 86 G DE GRG LAGPV AA++L + I + DSK ++ KKRE L I AI I + Sbjct: 14 GTDEAGRGCLAGPVTAAAVMLPDDFINEILTDSKLLTEKKRELLKPIIEEQAIAIGFAHV 73 Query: 87 SHQYIDKHNIHKATLDAIYHAVENL-------QVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ID NI A++ ++ ++E++ Q P+ L+DG VIKG Sbjct: 74 MMSEIDDINILNASILGMHRSIESMIGTLSRKQKKPQHILVDGNRFKPFPKIDHTTVIKG 133 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D L IAAASIIAK RD M + H+++P Y + + GYPT +H++ I+ G + HR Sbjct: 134 DGKYLPIAAASIIAKTARDEYMNLIHEEFPMYNWKKNKGYPTKEHREAIRRYGITKYHRK 193 Query: 200 TFRPL 204 +F+ L Sbjct: 194 SFKLL 198 >gi|78211866|ref|YP_380645.1| RNase HII [Synechococcus sp. CC9605] gi|97189422|sp|Q3AMU2|RNH2_SYNSC RecName: Full=Ribonuclease HII; Short=RNase HII gi|78196325|gb|ABB34090.1| Ribonuclease H [Synechococcus sp. CC9605] Length = 199 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 77/186 (41%), Positives = 109/186 (58%), Gaps = 15/186 (8%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 VAG+DEVGRG L GPV AA++L+ + + G+ DSKK+S K+R L I S + Sbjct: 13 VAGVDEVGRGCLFGPVFAAAVVLEGSAAECLLKAGLTDSKKLSAKRRAALVPLIQSLCVA 72 Query: 82 S-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF-----A 135 S + AS + ID I AT A+ A++ L P L+DG +LP + + Sbjct: 73 SALGQASAREIDACGIRVATERAMLRALQRLPQSPGLVLVDG-----NLPLRLWHGPQRT 127 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 VI GDS S +IAAAS++AK RD L+R ++P YG + H GY TA+H+Q + + GP+ Sbjct: 128 VIAGDSRSAAIAAASVLAKEARDALIRRLSARFPGYGLERHAGYGTAQHRQSLIDSGPTP 187 Query: 196 IHRLTF 201 +HR TF Sbjct: 188 LHRHTF 193 >gi|225021101|ref|ZP_03710293.1| hypothetical protein CORMATOL_01113 [Corynebacterium matruchotii ATCC 33806] gi|224946101|gb|EEG27310.1| hypothetical protein CORMATOL_01113 [Corynebacterium matruchotii ATCC 33806] Length = 236 Score = 112 bits (279), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 70/194 (36%), Positives = 99/194 (51%), Gaps = 4/194 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKR 68 H E + + + PVAG+DE GRGA AGP+ +AA IL P + DSKK+S R Sbjct: 7 HRTFEVALHQAGLGPVAGVDEAGRGACAGPITIAACILPSQPLAALSRLTDSKKLSAATR 66 Query: 69 EELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 L+ I A+ SI S ID++ I A + + AV L V P L D + + Sbjct: 67 AALFPLIQHHAVAWSILHISAADIDQYGIQHANVFGMRRAVALLDVQPGYVLTDALKV-D 125 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 C +I GD+ + I+AAS++AK RD +M + YP Y F SH GY T H Sbjct: 126 GFACSYLPIIGGDAAARCISAASVLAKHARDLVMAELAETYPRYEFASHKGYGTKVHMTA 185 Query: 188 IKEKGPSCIHRLTF 201 ++ G S +HR ++ Sbjct: 186 VRRYGASPVHRYSY 199 >gi|293400516|ref|ZP_06644661.1| ribonuclease HII [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305542|gb|EFE46786.1| ribonuclease HII [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 207 Score = 112 bits (279), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 73/181 (40%), Positives = 103/181 (56%), Gaps = 4/181 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDE GRG +AGP+VVAA+ I DSKK+S KKR+ L+++I A I Sbjct: 19 IIGIDEAGRGPIAGPLVVAAVSFPVGFSHESIYDSKKLSEKKRKALFQEIIQLASEYHIK 78 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S Q ID+ NI++AT A+ + L D +P + +++KGD S+ Sbjct: 79 IVSPQIIDEQNIYRATQLAMLELSNSFHD-ADGVLTDAMPLP-NASLDVISLVKGDQKSV 136 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIHRLTFRP 203 SIAAASI+AKVTRD +M K+YP YGF H GYPT H + + G + I+R ++ P Sbjct: 137 SIAAASILAKVTRDCIMCAYDKQYPQYGFAKHKGYPTKGHLEAMHTYGVINDIYRKSYGP 196 Query: 204 L 204 + Sbjct: 197 V 197 >gi|295132562|ref|YP_003583238.1| ribonuclease HII [Zunongwangia profunda SM-A87] gi|294980577|gb|ADF51042.1| ribonuclease HII [Zunongwangia profunda SM-A87] Length = 199 Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 65/177 (36%), Positives = 101/177 (57%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS-AIISISS 85 G DE GRG +AGPV AA+IL + + DSKK++H+KR L + I + A I+ Sbjct: 13 CGTDEAGRGCIAGPVTAAAVILPKHFENEFLRDSKKLTHQKRLLLKKIIENDCASYGITH 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + ID+ NI +++ A++ ++E L P ++DG ++KGD LS Sbjct: 73 IFMETIDEINILNSSILAMHKSIEKLSPEPEHIIVDGNRFKPFKNIAYECIVKGDDKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD M H++YP Y + + GYPT +H++ I++ G + HR +F+ Sbjct: 133 IAAASILAKTYRDEYMESIHEEYPMYNWKKNKGYPTKEHREAIRKYGITKYHRKSFK 189 >gi|72382906|ref|YP_292261.1| ribonuclease HII [Prochlorococcus marinus str. NATL2A] gi|97189164|sp|Q46IX0|RNH2_PROMT RecName: Full=Ribonuclease HII; Short=RNase HII gi|72002756|gb|AAZ58558.1| RNase HII [Prochlorococcus marinus str. NATL2A] Length = 195 Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 68/181 (37%), Positives = 103/181 (56%), Gaps = 5/181 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 +AG+DEVG+G L GPV AA+IL N + G+ DSKK+S ++R L I +++I Sbjct: 8 IAGVDEVGKGCLFGPVFAAAVILSKKNEIELLNQGLKDSKKLSQRQRHNLVPLIKTNSIA 67 Query: 82 -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 +I AS + ID I AT A+ A+E P L+DG P + ++G+ Sbjct: 68 WTIGQASAREIDVMGIRDATEKAMLRALEKFSSPPDLILVDGILPIRLWPGKQKTQVRGE 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S SIAAAS++AK TRD L++ +KY YG + + GY T H+ + ++G + +HR + Sbjct: 128 SHFASIAAASVLAKETRDELIKRLARKYNCYGLEKNKGYGTEIHRTKLIKEGATKLHRKS 187 Query: 201 F 201 F Sbjct: 188 F 188 >gi|312194955|ref|YP_004015016.1| ribonuclease H [Frankia sp. EuI1c] gi|311226291|gb|ADP79146.1| Ribonuclease H [Frankia sp. EuI1c] Length = 240 Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 80/205 (39%), Positives = 119/205 (58%), Gaps = 12/205 (5%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKRE 69 F E + + + PVAG+DE GRGA AGP+VVAA+ILDP + DSK ++ + RE Sbjct: 15 FGYERALARRGLGPVAGVDEAGRGACAGPLVVAAVILDPRRTGRLAELADSKLLTERIRE 74 Query: 70 ELYEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +YE + + A ++ I +A ID+H +H + + AV L + P L+DG + Sbjct: 75 RVYEDVLAVASAWSVVVIPAAE---IDRHGLHVMNITGMRRAVARLAIHPGYVLVDGFPV 131 Query: 126 PE-DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 P D P + AV KGD ++ +AAAS++AKVTRDR+M ++Y +Y F H GY TA H Sbjct: 132 PGIDTP--SLAVRKGDRVAACVAAASVVAKVTRDRIMCQLDERYGEYDFAQHKGYVTAAH 189 Query: 185 QQVIKEKGPSCIHRLTFRPLRNLSV 209 + GP HRL++ +++L V Sbjct: 190 AAALARHGPCEEHRLSYANVQSLIV 214 >gi|256419897|ref|YP_003120550.1| ribonuclease H [Chitinophaga pinensis DSM 2588] gi|256034805|gb|ACU58349.1| Ribonuclease H [Chitinophaga pinensis DSM 2588] Length = 220 Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 77/187 (41%), Positives = 111/187 (59%), Gaps = 3/187 (1%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 +K++ AG DE GRG LAGPV AA+IL P +NDSK++ R++L E + A Sbjct: 7 QKDIAFEAGCDEAGRGCLAGPVFAAAVILPPKFRNKLLNDSKQLKASDRDKLREVVEKEA 66 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLPCQAFAVI 137 I +++S + ID+ NI KA+ A++ A++ L+ P L+DG R +P A ++ Sbjct: 67 IAYAVASVDNLEIDRINILKASFRAMHLALDQLKQQPGYILVDGNRFVPYGKTPHA-CIV 125 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD I SIAAASI+AK RD M H++YP +G+ + GYPT H+ I+ G + H Sbjct: 126 KGDGIYASIAAASILAKTYRDEYMHKLHQEYPHFGWLENKGYPTLFHRDAIRAHGETPYH 185 Query: 198 RLTFRPL 204 R TFR L Sbjct: 186 RKTFRLL 192 >gi|300813510|ref|ZP_07093850.1| ribonuclease HII [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512378|gb|EFK39538.1| ribonuclease HII [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 168 Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 71/170 (41%), Positives = 98/170 (57%), Gaps = 9/170 (5%) Query: 35 GALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDK 93 G+L G V+ AII+ ++ G+NDSKK++ KKR+ELY KI ++ + I A + IDK Sbjct: 1 GSLFGDVLSCAIIMKEDSNIEGVNDSKKLTAKKRKELYNKILKDSLAVGIGRADAKTIDK 60 Query: 94 HNIHKATLDAIYHAVENLQ------VIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 NI AT ++ A+ENL+ V+P LID +I + ++IKGD SIA Sbjct: 61 LNIKMATHLSMVRAIENLRDSQGNLVVPDLVLIDAENIETTIF--QHSIIKGDENCYSIA 118 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 ASIIAKV RD L YP YG + H GY T H++ +K GPS +H Sbjct: 119 CASIIAKVYRDSLCDKWATIYPGYGIEKHKGYGTKFHREALKAYGPSPMH 168 >gi|87199856|ref|YP_497113.1| ribonuclease H [Novosphingobium aromaticivorans DSM 12444] gi|97189114|sp|Q2G794|RNH2_NOVAD RecName: Full=Ribonuclease HII; Short=RNase HII gi|87135537|gb|ABD26279.1| RNase HII [Novosphingobium aromaticivorans DSM 12444] Length = 196 Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 76/192 (39%), Positives = 108/192 (56%), Gaps = 11/192 (5%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87 G+DE GRG LAGPVV AA++L P G++DSKK+S +R EL EKI ++ Sbjct: 5 GVDEAGRGPLAGPVVAAAVVLCKPR-PSGLDDSKKLSAARRAELEEKIKRRCRWAVGVVE 63 Query: 88 HQYIDKHNIHKATLDAIYHAVENL--QVI----PRSALIDGRSIPE----DLPCQAFAVI 137 ID+ NI AT+ A+ AV L Q+ L+DG P + A ++ Sbjct: 64 PDEIDRLNIFGATMLAMTLAVGALCEQLAHDEDVGEVLVDGNLTPHGRRPEWCWPARPIV 123 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD++ I+AASIIAK RDRLMR A +P YG++ + GY T +H ++E GP+ +H Sbjct: 124 GGDALEPCISAASIIAKEHRDRLMREAALAHPHYGWERNAGYGTPEHLAALREHGPTPLH 183 Query: 198 RLTFRPLRNLSV 209 R +F P+ L + Sbjct: 184 RRSFAPVAQLQL 195 >gi|219121434|ref|XP_002185941.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|209582790|gb|ACI65411.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 194 Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 15/194 (7%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKIT---SS 78 V G DE G G +AGPVV A+ + N G++DSK +S K RE +YE I S Sbjct: 1 VIGSDESGSGCIAGPVVTASCCVRDNAADGLWIDGVDDSKSLSTKDRERIYEAIVQNPSR 60 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS--------ALIDGRSIPEDLP 130 + SI S ID+ + ATL+ ++E++ R+ +++DG P+ Sbjct: 61 YLWSIQERSAAEIDEQSATNATLNCFQDSIEDVVSQLRAEYPHCQPYSIVDGHRSPKVDG 120 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 C + +GD+ ++A ASI+A+VTRDR M +A KYP Y FD + GYP+ H +++ + Sbjct: 121 CTSRPWKQGDAYVYTVALASILARVTRDRHMALAAVKYPLYDFDRNGGYPSRAHTEILHQ 180 Query: 191 KGPSCIHRLTFRPL 204 G S IHR + +P+ Sbjct: 181 HGYSPIHRQSCKPV 194 >gi|94985723|ref|YP_605087.1| ribonuclease H [Deinococcus geothermalis DSM 11300] gi|94556004|gb|ABF45918.1| Ribonuclease H [Deinococcus geothermalis DSM 11300] Length = 224 Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 71/199 (35%), Positives = 107/199 (53%), Gaps = 3/199 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + E + + VAG+DE GRGA AGPV VAA+IL + DSK+++ +RE Sbjct: 23 PDWAFEREHWRRGYFRVAGVDEAGRGAWAGPVTVAAVILPGLATEYPFRDSKQLTPAQRE 82 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L ++ A+ ++ A + I++ NI AT A A+ L P++ + D + Sbjct: 83 ALAAQVRQVAVAWAVEHAWPEEIERLNILGATHAAAARALARLDPPPQALVTDYLRLRTA 142 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LP A K D++S S+AAAS++AK RDRLM +YP YGF +H GY H+ + Sbjct: 143 LPL--LAPPKADALSYSVAAASLLAKTERDRLMAELDARYPGYGFAAHKGYGAPAHRAAL 200 Query: 189 KEKGPSCIHRLTFRPLRNL 207 + G S +HR + P+ L Sbjct: 201 ERLGVSELHRRGYAPIARL 219 >gi|332701663|ref|ZP_08421751.1| Ribonuclease H [Desulfovibrio africanus str. Walvis Bay] gi|332551812|gb|EGJ48856.1| Ribonuclease H [Desulfovibrio africanus str. Walvis Bay] Length = 211 Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 80/183 (43%), Positives = 109/183 (59%), Gaps = 8/183 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DE GRG LAGPVV AA++L G+ DSK +S +R L I + A+ ++ Sbjct: 13 VAGVDEAGRGCLAGPVVAAAVVLPAYVKLPGLADSKLLSPAERARLEPLIKTRALAWAVG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLPCQAF----AVIKG 139 + ID+ N+ +ATL A+ AV L++ P L+DG + IPE L F A++ G Sbjct: 73 VSWPPEIDERNVLRATLLAMSRAVRALKLSPDELLVDGNQCIPEGL--VGFIPQRAIVDG 130 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D + I+AAS++AK RDRLM + YP YGF H GY T +H Q + E GPS +HRL Sbjct: 131 DRLVRCISAASVLAKTFRDRLMGKLERLYPGYGFARHKGYGTREHLQALVELGPSRMHRL 190 Query: 200 TFR 202 TFR Sbjct: 191 TFR 193 >gi|296273902|ref|YP_003656533.1| ribonuclease H [Arcobacter nitrofigilis DSM 7299] gi|296098076|gb|ADG94026.1| Ribonuclease H [Arcobacter nitrofigilis DSM 7299] Length = 178 Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 68/183 (37%), Positives = 106/183 (57%), Gaps = 18/183 (9%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + GIDE GRG LAGP+ VA ++L N G+NDSKK+S K+RE+L+++I ++ I Sbjct: 2 LCGIDEAGRGPLAGPLCVAGVVL--KNPIEGLNDSKKLSEKRREKLFDEIILNSYYHIVF 59 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV------IKG 139 S + +D+ + ++I ++N++ L+DG + +F + IK Sbjct: 60 TSAKTLDELGLSLCLKNSIEEIMQNVKA--NEYLMDGNT--------SFGIEGLKHEIKA 109 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D+ ++AASI+AKV+RDR M +KYP+Y F+ H GY T H +IKE G S HR Sbjct: 110 DANYEEVSAASILAKVSRDRYMVEISQKYPNYLFEKHKGYGTKAHIDLIKEFGRSEEHRY 169 Query: 200 TFR 202 +F+ Sbjct: 170 SFK 172 >gi|315637835|ref|ZP_07893025.1| ribonuclease HII [Campylobacter upsaliensis JV21] gi|315482076|gb|EFU72690.1| ribonuclease HII [Campylobacter upsaliensis JV21] Length = 174 Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 68/178 (38%), Positives = 104/178 (58%), Gaps = 8/178 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + GIDE GRGALAGP+ +AA +L P N + DSKK+S KKRE+LY +I ++ I Sbjct: 2 LVGIDEAGRGALAGPLFMAACELLKPLN---ELKDSKKLSEKKREKLYNEIILNSNYLIL 58 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + S+ ID + K + + +L + + DG + L + +IK DS+ Sbjct: 59 AFSNAQIDTLGLSKCLQRGL--EIIHLHFEKQRKIFDGNTNYGVLGIEN--LIKADSLIA 114 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 ++AASI+AKV+RD++M+ KYP YGF+ H Y T H++ I + G +HRL+F+ Sbjct: 115 EVSAASILAKVSRDKVMQFLALKYPQYGFEIHKAYGTKAHRESIAKYGACKLHRLSFK 172 >gi|282859032|ref|ZP_06268168.1| ribonuclease HII [Prevotella bivia JCVIHMP010] gi|282588200|gb|EFB93369.1| ribonuclease HII [Prevotella bivia JCVIHMP010] Length = 201 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 71/181 (39%), Positives = 103/181 (56%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL N +NDSK++S K R L ++I A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPENYHNDRLNDSKQLSAKARYALRKEIERDAMAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSIS 143 + IDK NI A++ A++ A++ L + P + ++DG D+P +IKGD Sbjct: 73 VTPAEIDKINILNASILAMHRALDQLTLRPEAIIVDGNRFKAYHDIPHTT--IIKGDGKY 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 LSIAAASI+AK RD M K+YP Y + ++GYPT H+ I + G + HR ++ Sbjct: 131 LSIAAASILAKTYRDDYMLKLAKEYPIYDWQHNMGYPTKAHRAAIAQYGITPYHRKSYNL 190 Query: 204 L 204 L Sbjct: 191 L 191 >gi|239982734|ref|ZP_04705258.1| ribonuclease HII [Streptomyces albus J1074] gi|291454583|ref|ZP_06593973.1| ribonuclease HII [Streptomyces albus J1074] gi|291357532|gb|EFE84434.1| ribonuclease HII [Streptomyces albus J1074] Length = 233 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 67/183 (36%), Positives = 99/183 (54%), Gaps = 1/183 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRGA AGPV V A + P G+ DSK ++ K+R L ++ + Sbjct: 23 VAGVDEVGRGAWAGPVSVCAAVTGLRRAPEGLTDSKLLAPKRRTALAGELEGWVTAYAFG 82 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 +S + ID + A A A+E L V P + ++DG+ P + VIKGD + Sbjct: 83 HSSPEEIDDLGMTAALRLAAVRALEGLPVRPDAVILDGKHDYLGAPWKVRTVIKGDQSCV 142 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +AAAS++AKV RD +M + D+ F + GYP+ HQ + E+GP+ HRL++ L Sbjct: 143 CVAAASVLAKVRRDAMMAELGVGHEDFCFADNAGYPSPAHQAALAERGPTPYHRLSWAYL 202 Query: 205 RNL 207 L Sbjct: 203 DAL 205 >gi|28210941|ref|NP_781885.1| ribonuclease HII [Clostridium tetani E88] gi|39932379|sp|Q895L8|RNH2_CLOTE RecName: Full=Ribonuclease HII; Short=RNase HII gi|28203380|gb|AAO35822.1| ribonuclease HII [Clostridium tetani E88] Length = 271 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/203 (40%), Positives = 117/203 (57%), Gaps = 17/203 (8%) Query: 15 EAMVREKNMWP----------VAGIDEVGRGALAGPVVVAAIILDP-----NNIPFGIND 59 E +VR K M+ +AG+DEVGRG LAGP+V AA+ILD N++ +G+ D Sbjct: 65 EEIVRLKKMYDFDKKFANNVLIAGVDEVGRGPLAGPIVAAAVILDLNYKNHNDLFYGLKD 124 Query: 60 SKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 SKK+ K+RE L I A+ +I + ID I + + + L+V P Sbjct: 125 SKKLRAKERENLSHIIKDKALYYNIFELDNHMIDTSGIAWCNNEVLKKSTLGLEVTPGIV 184 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + DG SI +++ + +IKGD+ S SIAAASIIAKV RD+ M K YP YGF+ + G Sbjct: 185 ISDGFSI-KNINIKNEYIIKGDAKSASIAAASIIAKVYRDKKMEEYSKIYPHYGFEKNSG 243 Query: 179 YPTAKHQQVIKEKGPSCIHRLTF 201 Y T +H + +K+ GP IHR++F Sbjct: 244 YGTDEHTKALKKYGPCPIHRMSF 266 >gi|238063313|ref|ZP_04608022.1| ribonuclease HII [Micromonospora sp. ATCC 39149] gi|237885124|gb|EEP73952.1| ribonuclease HII [Micromonospora sp. ATCC 39149] Length = 270 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/193 (36%), Positives = 106/193 (54%), Gaps = 4/193 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKRE 69 + LE ++ + VAG DE GRGA AGP+V AA +L G+ DSK ++ RE Sbjct: 16 YALERALQRRGFRHVAGADEAGRGACAGPLVAAAAVLPEGRRGEIDGLADSKLLTPASRE 75 Query: 70 ELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +Y+++ +SA+ ++ +D +H L A+ A+ +L P L DG + + Sbjct: 76 RVYDQVVASALAYAVVVIPADEVDARGLHVCNLAAMRRALASLTTRPDYVLTDGFGV-DG 134 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L AV KGD ++ +AAAS++AKVTRDR+M +P YGF H GY TA+H + Sbjct: 135 LDVPGLAVWKGDRVAACVAAASVLAKVTRDRIMVELDASFPGYGFAEHKGYITAEHTAAL 194 Query: 189 KEKGPSCIHRLTF 201 +E GP HR ++ Sbjct: 195 REHGPCLEHRFSY 207 >gi|25028481|ref|NP_738535.1| ribonuclease HII [Corynebacterium efficiens YS-314] gi|259507538|ref|ZP_05750438.1| ribonuclease HII [Corynebacterium efficiens YS-314] gi|39932418|sp|Q8FP63|RNH2_COREF RecName: Full=Ribonuclease HII; Short=RNase HII gi|23493766|dbj|BAC18735.1| putative ribonuclease HII [Corynebacterium efficiens YS-314] gi|259164858|gb|EEW49412.1| ribonuclease HII [Corynebacterium efficiens YS-314] Length = 231 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/193 (36%), Positives = 99/193 (51%), Gaps = 10/193 (5%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72 E + + PVAG+DE GRGA GP+ +AA IL I + DSK++S R L Sbjct: 14 EVALSRHGLGPVAGVDEAGRGACCGPISIAACILPDRPIADLAVLTDSKQLSPPVRARLM 73 Query: 73 EKITSSAI----ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + A+ I IS+A ID+ I A + + AV L+V P L D IP Sbjct: 74 PLVKKHAVAWSVIHISAAD---IDRFGIQHANISGMRRAVAALEVRPGYVLTDAFRIP-G 129 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LPC + + GD+ + IAAAS++AK TRD +M +++P YG H GY T H + Sbjct: 130 LPCPSLPIPGGDASARCIAAASVLAKQTRDEIMTDMAQQFPQYGLAGHKGYSTKVHMDAV 189 Query: 189 KEKGPSCIHRLTF 201 + G S HR ++ Sbjct: 190 RRHGASPQHRYSY 202 >gi|220912962|ref|YP_002488271.1| ribonuclease HII [Arthrobacter chlorophenolicus A6] gi|219859840|gb|ACL40182.1| Ribonuclease H [Arthrobacter chlorophenolicus A6] Length = 260 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/218 (36%), Positives = 112/218 (51%), Gaps = 24/218 (11%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD-PNNIPF-GINDSKKISHKK 67 P E + + + +AG+DEVGRGALAGPV V ++D P G+ DSK + + Sbjct: 30 PTLRHERTFKAQGVRFLAGVDEVGRGALAGPVSVGIAVVDLERQKPLAGVRDSKLLRATE 89 Query: 68 REELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDG- 122 RE L + ++ S + AS ID I A A A +++ VIP L+DG Sbjct: 90 RERLEPLVRRWSVASAVGHASAHEIDALGIIAALRLAGTRAWQDILAAGVIPDMVLLDGS 149 Query: 123 --------------RSIPEDLPCQA--FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 + PE C A +K D LS+AAAS+IAKV RDR MR H Sbjct: 150 HNWLSPAEQLSLFDQEAPE-AACDAPVHTKVKADMQCLSVAAASVIAKVERDRTMRELHA 208 Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +YPD+G+D + GY T H+ V++ GP+ HR+++R L Sbjct: 209 EYPDFGWDINNGYATVLHRDVLRAAGPTPYHRVSWRLL 246 >gi|269926380|ref|YP_003323003.1| Ribonuclease H [Thermobaculum terrenum ATCC BAA-798] gi|269790040|gb|ACZ42181.1| Ribonuclease H [Thermobaculum terrenum ATCC BAA-798] Length = 219 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 109/208 (52%), Gaps = 8/208 (3%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN-----NIPFGINDS 60 I E+ E + + VAG+DE GRGA AGPV A ++L P+ ++ + DS Sbjct: 8 IEEKGFHPFEPTLWRQGYAYVAGLDEAGRGAWAGPVFGAVVVLPPDLSTLESLAEVVRDS 67 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 K +S +RE YE I +SA+ I I +++ ID I +AT A A+ + +P L Sbjct: 68 KVLSPNRRELAYEAIKASALYIGIGASTPDEIDTLGISRATELAWLRALRDAD-LPDVLL 126 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 ID I A++ GD++ LSIAAAS++AKV RDR M + P + F H GY Sbjct: 127 IDAFKI-RACSINQVAIVDGDALCLSIAAASVVAKVLRDRYMADLTEYVPGFSFHKHKGY 185 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 T +HQ I G + HR +F P+ + Sbjct: 186 GTREHQAEIAIYGVTPQHRRSFAPISTV 213 >gi|261881041|ref|ZP_06007468.1| ribonuclease HII [Prevotella bergensis DSM 17361] gi|270332223|gb|EFA43009.1| ribonuclease HII [Prevotella bergensis DSM 17361] Length = 226 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/207 (37%), Positives = 109/207 (52%), Gaps = 31/207 (14%) Query: 27 AGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 AG DE GRG LAG V AA+IL D +N F NDSK++S KKR L E+I A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVFAAAVILPKDYDNPDF--NDSKQLSKKKRYALREQIIRDAVAWAV 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI------------------ 125 + ID+ NI A+ A++ A++ L V P + +IDG Sbjct: 71 GIVTPAEIDRINILHASFLAMHRAIDQLAVRPEALIIDGNRFDPYKPLSENATEGRKERV 130 Query: 126 ---PED---LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P+D LP Q ++KGD +IAAASI+AK RD M H +YP Y ++S+ GY Sbjct: 131 VTRPDDPAVLPWQC--IVKGDGKYQNIAAASILAKTFRDDYMDELHLQYPMYHWNSNKGY 188 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRN 206 PT H++ I G + HR ++ L N Sbjct: 189 PTRIHREAIARYGITPFHRKSYNLLGN 215 >gi|83589825|ref|YP_429834.1| ribonuclease H [Moorella thermoacetica ATCC 39073] gi|97182952|sp|Q2RJU8|RNH2_MOOTA RecName: Full=Ribonuclease HII; Short=RNase HII gi|83572739|gb|ABC19291.1| RNase HII [Moorella thermoacetica ATCC 39073] Length = 206 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/192 (38%), Positives = 108/192 (56%), Gaps = 2/192 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E ++ + + +AG+DE GRG LAGPV AA+IL P G+NDSKK+ +R EL Sbjct: 15 YAWERRLQRQGVARIAGVDEAGRGPLAGPVTAAAVILPPGLFIAGLNDSKKVPPARRREL 74 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 I ++ I S + ID NI A+ A+ A+ L + P LIDG +P L Sbjct: 75 AAVIKKESLAWGIGWVSVKEIDCLNILAASRWAMRRALSALAIRPDHVLIDGMELP-GLK 133 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++ GD++S SIAAASI+AKV RD LM + YG + GYPT +H++ ++ Sbjct: 134 IPQTPLVGGDALSASIAAASILAKVARDELMVAYDAVFQGYGLAGNKGYPTREHREALRR 193 Query: 191 KGPSCIHRLTFR 202 GP +HR +F+ Sbjct: 194 LGPCALHRRSFK 205 >gi|157414103|ref|YP_001484969.1| ribonuclease HII [Prochlorococcus marinus str. MIT 9215] gi|166991069|sp|A8G702|RNH2_PROM2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|157388678|gb|ABV51383.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9215] Length = 205 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/185 (38%), Positives = 102/185 (55%), Gaps = 5/185 (2%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-SAIIS 82 GIDEVGRGA+ GPV A ++L N G+ DSKK++ KKR+ L KI S+ Sbjct: 20 GIDEVGRGAIFGPVFSAVVVLTEKNKFLLKQLGVKDSKKLTPKKRKFLVPKILLLSSDYG 79 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I +S + ID I AT ++ A++ L+ P ++DG + ++ GDS Sbjct: 80 IGQSSVREIDNLGIRVATELSMIRALKKLKEKPSELIVDGPLLLRPWRGTQKNIVSGDSK 139 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +SIA+ASI+AKV+RD LM KKY Y + GY T +H +IK+ G + +HR +F Sbjct: 140 FISIASASIVAKVSRDNLMMKLEKKYSGYLIFKNKGYGTREHLSLIKKNGVTNLHRKSFL 199 Query: 203 PLRNL 207 NL Sbjct: 200 KKSNL 204 >gi|213962065|ref|ZP_03390330.1| ribonuclease HII [Capnocytophaga sputigena Capno] gi|213955418|gb|EEB66735.1| ribonuclease HII [Capnocytophaga sputigena Capno] Length = 198 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/189 (36%), Positives = 104/189 (55%), Gaps = 9/189 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV A +IL P+ + DSK+++ K+R L I A+ ++ Sbjct: 12 AGTDEAGRGCLAGPVTAAGVILPPDFKNDLLTDSKQLTEKQRNLLRPIIEREAVAYAVCH 71 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF---AVIKGDSI 142 ID+ NI +A++ A++ A+ L P +DG +P Q V+KGD Sbjct: 72 VLPAEIDELNILRASITAMHRAIAQLSPTPEFIAVDGNKF---VPYQKIPYACVVKGDGK 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AK RD M +++P+Y + + GYPT +H++ I E G + HR TF+ Sbjct: 129 IQTIAAASILAKTYRDAYMEDLAQQFPEYHWQQNKGYPTPEHRKAIAEHGATEHHRKTFQ 188 Query: 203 --PLRNLSV 209 P+ LS+ Sbjct: 189 LLPVEQLSL 197 >gi|315225093|ref|ZP_07866910.1| ribonuclease HII [Capnocytophaga ochracea F0287] gi|314944776|gb|EFS96808.1| ribonuclease HII [Capnocytophaga ochracea F0287] Length = 198 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/189 (36%), Positives = 106/189 (56%), Gaps = 9/189 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL + + DSK+++ K+R L I A+ ++ Sbjct: 12 AGTDEAGRGCLAGPVTAAAVILPSDFKNDLLTDSKQLTEKQRNLLRPIIEREAVAYAVCH 71 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF---AVIKGDSI 142 ID+ NI +A++ A++ A+ L++ P +DG +P Q V+KGD Sbjct: 72 VLPAEIDELNILRASITAMHRAIAQLKITPDFIAVDGNKF---VPYQKIPYACVVKGDGK 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AK RD M +++P+Y + + GYPT +H++ I E G + HR TF+ Sbjct: 129 IQTIAAASILAKTYRDAYMEDLAQQFPEYHWQQNKGYPTPEHRKAIAEYGATKHHRKTFQ 188 Query: 203 --PLRNLSV 209 P+ LS+ Sbjct: 189 LLPVEQLSL 197 >gi|126663331|ref|ZP_01734329.1| ribonuclease HII [Flavobacteria bacterium BAL38] gi|126624989|gb|EAZ95679.1| ribonuclease HII [Flavobacteria bacterium BAL38] Length = 219 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 106/204 (51%), Gaps = 33/204 (16%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSA 86 G DE GRG LAGPV AAI+L + +NDSK++S K R++L + AI +++ Sbjct: 14 GTDEAGRGCLAGPVTAAAILLPEHFENTLLNDSKQLSEKNRKKLRPILEELAISYAVTHI 73 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG------------------------ 122 ID+ NI A++ A+ ++ L P ++DG Sbjct: 74 FSNEIDEINILNASMKAMQKSILQLNTKPEYIIVDGNRPLNGKLGMKQKTGKIFSEEEIQ 133 Query: 123 --RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 +SIP +++KGD+ LSIAAAS++AK RD M H+++P Y + + GYP Sbjct: 134 FLKSIPNT------SIVKGDAKYLSIAAASVLAKTYRDDYMDAIHEEFPMYNWKKNKGYP 187 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPL 204 T +H++ IK+ G HR++FR L Sbjct: 188 TVEHREAIKKYGACKYHRMSFRLL 211 >gi|256827134|ref|YP_003151093.1| ribonuclease HII [Cryptobacterium curtum DSM 15641] gi|256583277|gb|ACU94411.1| ribonuclease HII [Cryptobacterium curtum DSM 15641] Length = 262 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 73/182 (40%), Positives = 101/182 (55%), Gaps = 14/182 (7%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87 G+DEVGRG LAGP+ VAA++L +NDSK++S +REE+ + AI + S Sbjct: 77 GLDEVGRGPLAGPLTVAAVVLPEAPHIAHLNDSKQLSASRREEVAAAVKDVAI----AWS 132 Query: 88 HQYIDKHNIHKATLDAIYH--------AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 Q+I +I A + A AVE V L+DG + D+ + F IKG Sbjct: 133 VQHIAPEDIDDAGMSACLRRAFGRAVAAVETAGVAIDVVLLDGNPLHFDVRERTF--IKG 190 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D+ IAAAS++AKV RD LM A + YP YGFD + GY +A+H IK+ G +HR Sbjct: 191 DARLACIAAASVVAKVERDELMTQAAQTYPVYGFDRNKGYGSAEHIAAIKKYGLCPLHRR 250 Query: 200 TF 201 +F Sbjct: 251 SF 252 >gi|195953419|ref|YP_002121709.1| Ribonuclease H [Hydrogenobaculum sp. Y04AAS1] gi|195933031|gb|ACG57731.1| Ribonuclease H [Hydrogenobaculum sp. Y04AAS1] Length = 213 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/189 (39%), Positives = 101/189 (53%), Gaps = 14/189 (7%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG------INDSKKISHKKREELYEK 74 K +A +DE GRGALAGP+VV AI++D +I F DSKK+ R ++ Sbjct: 27 KRGLTLACVDEAGRGALAGPLVVGAILVDNLDIFFEEEYTLIKGDSKKLKEADRFWAFDT 86 Query: 75 ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQV--IPRSALIDGRSIPEDLPCQ 132 I S+ A+HQ ID I KAT A+ A+E L+ I S I+ ED C Sbjct: 87 IKKYFKYSVGIATHQEIDDFGITKATKMAMKRALEALKGFDIVLSDFIN----LEDYDC- 141 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++KGD S SI AS++AK TRD++M + + FD H GY T +H + IK+ G Sbjct: 142 -IPIVKGDEKSFSIRLASLVAKATRDKMMIDYASSFKPFSFDKHKGYGTKEHIKEIKDFG 200 Query: 193 PSCIHRLTF 201 S IHR +F Sbjct: 201 LSSIHRRSF 209 >gi|87301873|ref|ZP_01084707.1| ribonuclease HII [Synechococcus sp. WH 5701] gi|87283441|gb|EAQ75396.1| ribonuclease HII [Synechococcus sp. WH 5701] Length = 198 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 69/182 (37%), Positives = 101/182 (55%), Gaps = 7/182 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA-I 80 +AG+DEVGRG L GPV AA++L G+ DSK + + R+ L IT+ A Sbjct: 6 LAGVDEVGRGCLFGPVFAAAVVLPAQAAAPLAAAGLTDSKALRPRHRQRLVPLITAQAEA 65 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL-PCQAFAVIKG 139 ++ AS ID I AT A+ A++ L P ++DG +P L P + ++ G Sbjct: 66 WALGQASAADIDHIGIRAATEKAMVRALQRLPQAPALVVVDG-VLPLRLWPGRQRTLVHG 124 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D L+IAAAS++AK RD L+ + +P YG + H GY TA H++ + GPS +HRL Sbjct: 125 DRRCLAIAAASVLAKQARDALIVRLAEGFPGYGLERHAGYGTALHREALIRLGPSRLHRL 184 Query: 200 TF 201 +F Sbjct: 185 SF 186 >gi|86742269|ref|YP_482669.1| ribonuclease HII [Frankia sp. CcI3] gi|123764526|sp|Q2J702|RNH2_FRASC RecName: Full=Ribonuclease HII; Short=RNase HII gi|86569131|gb|ABD12940.1| Ribonuclease H [Frankia sp. CcI3] Length = 240 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/196 (37%), Positives = 111/196 (56%), Gaps = 10/196 (5%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKRE 69 F E + + PVAG+DE GRGA AGP+V+AA+IL P + DSK ++ + RE Sbjct: 15 FGYERALNRHGLGPVAGVDEAGRGACAGPLVIAAVILAPEARQRLARLADSKLLTEQIRE 74 Query: 70 ELYEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 ++E + ++A + IS+A ID+ +H A + + AV L P L DG ++ Sbjct: 75 SVFEDVMAAAAAWSTVVISAAE---IDRVGLHVANITGMRRAVARLSARPGYVLTDGFAV 131 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 ++ AV+KGD + +AAAS++AKVTRDR+MR H +Y +Y F H GY TA H Sbjct: 132 A-GFGVESLAVVKGDRVVACVAAASVVAKVTRDRIMRALHTRYAEYDFAQHKGYVTAAHA 190 Query: 186 QVIKEKGPSCIHRLTF 201 + GP HR+++ Sbjct: 191 AALARCGPCDEHRMSY 206 >gi|330466295|ref|YP_004404038.1| ribonuclease H [Verrucosispora maris AB-18-032] gi|328809266|gb|AEB43438.1| ribonuclease H [Verrucosispora maris AB-18-032] Length = 270 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/193 (36%), Positives = 107/193 (55%), Gaps = 4/193 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKRE 69 + LE ++ + VAG DE GRGA AGP+V AA +L G+ DSK ++ RE Sbjct: 16 YALERALQRRGFRYVAGADEAGRGACAGPLVAAAAVLPEGRRGEIDGLADSKLLTPASRE 75 Query: 70 ELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +Y+++ + A+ ++ + +D +H L A+ A+ +L V P L DG + + Sbjct: 76 RVYDEVVARALAYAVVVIPAEEVDARGLHVCNLAAMRRALASLTVRPEYVLTDGFGV-DG 134 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L AV KGD ++ +AAAS++AKVTRDR+M ++P YGF H GY TA H + Sbjct: 135 LDVPGLAVWKGDRVAACVAAASVLAKVTRDRIMVDLDAEHPGYGFAEHKGYITADHTAAL 194 Query: 189 KEKGPSCIHRLTF 201 +E GP HR ++ Sbjct: 195 REHGPCREHRFSY 207 >gi|219848742|ref|YP_002463175.1| ribonuclease HII [Chloroflexus aggregans DSM 9485] gi|254807969|sp|B8GBB1|RNH2_CHLAD RecName: Full=Ribonuclease HII; Short=RNase HII gi|219543001|gb|ACL24739.1| Ribonuclease H [Chloroflexus aggregans DSM 9485] Length = 212 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 77/204 (37%), Positives = 115/204 (56%), Gaps = 7/204 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII-----LDPNNIPFGINDSKKIS 64 P +E + + +AGIDE GRG AGPVV AA++ + + ++DSK+++ Sbjct: 3 PDLSIEQTLLARGYRVLAGIDEAGRGCWAGPVVAAAVVLAPIVYERPGLLDAVDDSKQLT 62 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 RE Y + A I + + +D + I AT A+ A+ +L + LID Sbjct: 63 AVARERAYTLVQRYARGIGVGTVPAFLVDAYGILPATRLAMTLALLSLPCSVDALLIDAE 122 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P + ++++GD+ SLSIAAASIIAKVTRDRLM+ A + YP YGF H GY T Sbjct: 123 RLP-GIRVPQESLVRGDARSLSIAAASIIAKVTRDRLMQTADRCYPQYGFALHKGYGTPV 181 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H++ +++ GPS HR TF+P+ L Sbjct: 182 HRRALRQYGPSPFHRRTFQPVLEL 205 >gi|310831397|ref|YP_003970040.1| putative ribonuclease HII [Cafeteria roenbergensis virus BV-PW1] gi|309386581|gb|ADO67441.1| putative ribonuclease HII [Cafeteria roenbergensis virus BV-PW1] Length = 202 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 68/192 (35%), Positives = 104/192 (54%), Gaps = 14/192 (7%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITSSAIISISS 85 G+DE GRG GPV A++ P N+ P+ + DSKK++ KKR LY I + I Sbjct: 12 GLDEAGRGCWWGPVTAGAVMW-PENLTHPY-LTDSKKLTEKKRNVLYTWILEKCLCGIGE 69 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQ-------VIPRSALIDGRSIPE-DLPCQAFAVI 137 A+ ID I +AT A+ A++NL+ + + +IDG + E D P +++ Sbjct: 70 ATSYEIDTIGILEATKLAMNRAIKNLEKNITMSSIKINNLIIDGINWKEKDFPYPITSIV 129 Query: 138 KGDSISLSIAAASIIAKVTRDRLM--RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 KGD SIAAAS++AKV RD + + Y D H GY T H++++ + GP+ Sbjct: 130 KGDGKYYSIAAASVLAKVYRDNYCYKKALEDNFKTYLLDKHKGYGTKIHKEMLDKYGPTE 189 Query: 196 IHRLTFRPLRNL 207 HR +F+P+ N+ Sbjct: 190 EHRHSFKPICNM 201 >gi|116072124|ref|ZP_01469392.1| Ribonuclease H [Synechococcus sp. BL107] gi|116065747|gb|EAU71505.1| Ribonuclease H [Synechococcus sp. BL107] Length = 199 Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/192 (39%), Positives = 110/192 (57%), Gaps = 17/192 (8%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII 81 VAG+DEVGRG L GPV AA++LD G+ DSKK+S K+R L I + Sbjct: 13 VAGVDEVGRGCLFGPVFAAAVVLDQVAEQRLWQAGLTDSKKLSAKRRGSLVPLIEQHCLT 72 Query: 82 S-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA----- 135 S + AS ID I +AT A+ A++ L+ P L+DG +LP + ++ Sbjct: 73 SGLGQASAHEIDAVGIRRATERAMLRALQKLEHSPNVVLVDG-----NLPLRLWSGPQKT 127 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 ++ GDS S +IAAAS++AK +RD L+R ++P YG + H GY TA H++ + GP+ Sbjct: 128 LVGGDSRSAAIAAASVLAKESRDALIRRLSNRFPGYGLERHAGYGTALHREALLALGPTS 187 Query: 196 IHRLTFRPLRNL 207 +HR +F LR L Sbjct: 188 MHRRSF--LRRL 197 >gi|317125409|ref|YP_004099521.1| ribonuclease H [Intrasporangium calvum DSM 43043] gi|315589497|gb|ADU48794.1| Ribonuclease H [Intrasporangium calvum DSM 43043] Length = 264 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 112/221 (50%), Gaps = 19/221 (8%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGIN 58 M + ++P +E ++ +AG+DEVGRGALAGPV V +++D + P G+ Sbjct: 1 MAVRTPSKKPSLRVERQLQRAGHRLLAGMDEVGRGALAGPVSVGVVVIDETVRSAPTGVK 60 Query: 59 DSKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117 DSK ++ + R L +I A+ S+ AS ID I A A A+ L+V+P Sbjct: 61 DSKLLTERARRGLVPRIQRWAVAYSVGHASPAEIDDIGIMAALRLAGLRALATLEVVPDL 120 Query: 118 ALIDGR----SIPEDLPCQAFA------------VIKGDSISLSIAAASIIAKVTRDRLM 161 ++DG + P ++ AFA +IK D S+AAAS+IAKV RD LM Sbjct: 121 VILDGNHDWLTAPYEVGLLAFADAAGPTTPPVTTMIKADLKCSSVAAASVIAKVERDELM 180 Query: 162 RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 ++P YG+ + GY +H + GP +HR ++R Sbjct: 181 VRLGAEHPAYGWTLNKGYSAPEHIDALARIGPCELHRRSWR 221 >gi|116075704|ref|ZP_01472963.1| Ribonuclease HII and HIII [Synechococcus sp. RS9916] gi|116067019|gb|EAU72774.1| Ribonuclease HII and HIII [Synechococcus sp. RS9916] Length = 193 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 68/180 (37%), Positives = 100/180 (55%), Gaps = 5/180 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA-II 81 AG+DEVGRG GPV AA++L G+ DSK ++ + R L I +A Sbjct: 6 AGVDEVGRGCWFGPVFAAAVVLSEAAASALTAEGLTDSKALTARHRARLVPLIEDAAEAW 65 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 ++ AS + ID H I +AT A+ A++ L P L+DG P +++GDS Sbjct: 66 ALGQASAREIDHHGIRRATELAMLRALQRLPQQPALVLVDGVLPLRLWPHSQQTIVRGDS 125 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAAS++AK +RD L+R +++P YG + H GY TA H+Q + GP+ +HR +F Sbjct: 126 SKASIAAASVLAKESRDALIRRLAERFPGYGLERHAGYGTAVHRQALLAHGPTAMHRCSF 185 >gi|19553236|ref|NP_601238.1| ribonuclease HII [Corynebacterium glutamicum ATCC 13032] gi|62390872|ref|YP_226274.1| ribonuclease HII [Corynebacterium glutamicum ATCC 13032] gi|41326211|emb|CAF20373.1| PROBABLE RIBONUCLEASE HII PROTEIN [Corynebacterium glutamicum ATCC 13032] Length = 222 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 69/191 (36%), Positives = 94/191 (49%), Gaps = 4/191 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREEL 71 E + + PVAG+DE GRGA GP+ +AA IL P + DSKK+S RE+L Sbjct: 10 FEVTLSRNGLGPVAGVDEAGRGACCGPISIAACILPDKPIQELAALTDSKKLSASTREKL 69 Query: 72 YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 I A+ S+ S Q ID+ I A + + AV L P L D +P Sbjct: 70 MPLIKKHALAWSVIVISAQDIDRFGIQHANISGMRRAVAALGTQPGYVLTDAMKVP-GFT 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD+ + IAAAS++AK TRD +M YP YG + H GY T H ++ Sbjct: 129 VPYLPIIGGDASARCIAAASVLAKQTRDDIMTDMANDYPHYGLEIHKGYSTKIHMDAVRH 188 Query: 191 KGPSCIHRLTF 201 G S HR ++ Sbjct: 189 HGASPEHRYSY 199 >gi|159036847|ref|YP_001536100.1| ribonuclease HII [Salinispora arenicola CNS-205] gi|189043653|sp|A8M684|RNH2_SALAI RecName: Full=Ribonuclease HII; Short=RNase HII gi|157915682|gb|ABV97109.1| Ribonuclease H [Salinispora arenicola CNS-205] Length = 269 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 71/196 (36%), Positives = 107/196 (54%), Gaps = 10/196 (5%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKRE 69 + LE ++ + VAG DE GRGA AGP+V AA +L G+ DSK ++ RE Sbjct: 16 YALERALQRRGFRHVAGADEAGRGACAGPLVAAAAVLPEGRRGEIDGLADSKLLTPASRE 75 Query: 70 ELYEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +Y ++ + A ++ I +A +D +H L A+ A+ +L P L DG + Sbjct: 76 RVYAEVVARALAYAVVVIPAAE---VDLRGLHVCNLAAMRRALASLATAPEYVLTDGFGV 132 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 + L AV KGD ++ +AAAS++AKVTRDR+M +P YGF H GY TA+H Sbjct: 133 -DGLDVPGLAVWKGDRVAACVAAASVLAKVTRDRIMVELDTTFPGYGFAEHKGYITAEHS 191 Query: 186 QVIKEKGPSCIHRLTF 201 ++E+GP HR ++ Sbjct: 192 AALRERGPCPEHRFSY 207 >gi|325963707|ref|YP_004241613.1| ribonuclease HII [Arthrobacter phenanthrenivorans Sphe3] gi|323469794|gb|ADX73479.1| ribonuclease HII [Arthrobacter phenanthrenivorans Sphe3] Length = 248 Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 76/215 (35%), Positives = 113/215 (52%), Gaps = 22/215 (10%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD-PNNIPF-GINDSKKISHKK 67 P E + + + +AG+DEVGRGALAGPV V ++D + P G+ DSK ++ + Sbjct: 8 PTLRHERTFKAQGIRYLAGVDEVGRGALAGPVSVGIAVVDLEHQKPLAGVRDSKLLTPSE 67 Query: 68 REELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGR 123 RE L + ++ S + AS Q ID I A A A +++ + P + L+DG Sbjct: 68 RERLEPLVRRWSVASAVGHASAQEIDSIGIIAALRLAGTRAWQDILAAGIRPEAVLLDGS 127 Query: 124 S---IPEDLP-----------CQA--FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 P P C A +K D LS+AAAS+IAKV RDR MR H + Sbjct: 128 HNWLSPAGQPSLFDEPVFEASCDAPVHTKVKADMQCLSVAAASVIAKVERDRTMRELHAE 187 Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +PD+G+D + GY T H+ V++ GP+ HR+++R Sbjct: 188 FPDFGWDINKGYATVLHRDVLRAAGPTPYHRVSWR 222 >gi|145352696|ref|XP_001420674.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580909|gb|ABO98967.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 189 Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 76/189 (40%), Positives = 115/189 (60%), Gaps = 8/189 (4%) Query: 20 EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 EK W V G+DE GRG LAGPVV AA + + + +NDSK+++ + REE++E+ Sbjct: 2 EKKHWEAGRHRVVGVDEAGRGPLAGPVVAAACFVPKDCVVDCVNDSKQLTEEGREEIFEE 61 Query: 75 ITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 + ++ I + ID+ NI + T++A++ + ++ + LIDG +P+ L + Sbjct: 62 LMANKDIEYGVCVIDQDRIDEINILECTMEAMHRSAADVPNVD-WVLIDGNRVPKPLEGK 120 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A A++KGD+ +++IAAASIIAKVTRDR+M K++P YGF H GY T H I + G Sbjct: 121 AEAIVKGDAKNVAIAAASIIAKVTRDRMMLEIDKEFPMYGFKDHKGYGTKAHMAAIDKHG 180 Query: 193 PSCIHRLTF 201 P HR TF Sbjct: 181 PCVYHRKTF 189 >gi|116671022|ref|YP_831955.1| ribonuclease HII [Arthrobacter sp. FB24] gi|189043563|sp|A0JXT5|RNH2_ARTS2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|116611131|gb|ABK03855.1| Ribonuclease H [Arthrobacter sp. FB24] Length = 221 Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 74/201 (36%), Positives = 108/201 (53%), Gaps = 22/201 (10%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELYEKITSSAIIS- 82 +AGIDEVGRGA+AGPV V ++D + + + DSK + RE L + + ++ S Sbjct: 21 LAGIDEVGRGAIAGPVTVGITVVDLSRPVLLDDVRDSKLLKESDRERLEPLVRNWSVASA 80 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGR----------SIPEDL 129 + AS ID I A A A + V P L+DG S+ +D Sbjct: 81 VGHASAGEIDALGIIAALRTAGTRAWLQILAAGVTPDVVLLDGSHNWLSPETQASLFDDA 140 Query: 130 P----CQA--FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 P C A ++K D LS+AAASI+AKV RDR+MR H +YP +G+D + GY TA Sbjct: 141 PAGPGCDAPVHTLVKADMQCLSVAAASILAKVERDRIMRSLHGEYPAFGWDENKGYGTAS 200 Query: 184 HQQVIKEKGPSCIHRLTFRPL 204 H++ ++ GPS HR++++ L Sbjct: 201 HKEALRAAGPSPYHRVSWQIL 221 >gi|289644815|ref|ZP_06476868.1| Ribonuclease H [Frankia symbiont of Datisca glomerata] gi|289505371|gb|EFD26417.1| Ribonuclease H [Frankia symbiont of Datisca glomerata] Length = 208 Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 72/182 (39%), Positives = 108/182 (59%), Gaps = 10/182 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSA---- 79 +AG+DE GRGA AGP+VVAA++L N + DSK++S + RE+++++I S A Sbjct: 1 MAGVDEAGRGACAGPLVVAAVVLPANGSRRLVDLADSKRLSPRLREQVFDEILSVAQAWA 60 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 + I S+ ID +H A + + AV L P L DG ++P L + AV+KG Sbjct: 61 TVVIQSSE---IDACGVHVANIAGMRRAVARLGRRPGYVLTDGFAVP-GLGVASTAVLKG 116 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D + +AAAS++AKVTRDR+M+ H ++P+Y F H GY TA H + GP HR+ Sbjct: 117 DQVVACVAAASVVAKVTRDRIMKDLHHRHPEYDFAQHKGYVTAGHAAALSAYGPCEQHRM 176 Query: 200 TF 201 ++ Sbjct: 177 SY 178 >gi|78776481|ref|YP_392796.1| ribonuclease HII [Sulfurimonas denitrificans DSM 1251] gi|78497021|gb|ABB43561.1| RNase HII [Sulfurimonas denitrificans DSM 1251] Length = 188 Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 101/179 (56%), Gaps = 10/179 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + GIDE GRG +AG +VVA IL N+ G+NDSKK++ KKRE LYE I ++ I Sbjct: 5 LCGIDEAGRGPIAGDLVVAGCIL--NSHVDGLNDSKKLNEKKREALYEIIIKNSSYHIVK 62 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI--PEDLPCQAFAVIKGDSIS 143 S + ID + I A+ ++NL + L DG + +LP +IK D Sbjct: 63 FSAKEIDDNGISICMKKALLEIMKNLTC--KEYLFDGNTNFGINNLP----TMIKADGKI 116 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 ++AASI+AKVT DR + KKYP Y F H GY TA H ++IK+ G IHR +++ Sbjct: 117 PEVSAASILAKVTHDRNIINDAKKYPQYQFQKHKGYGTALHVEMIKKYGYCEIHRKSYK 175 >gi|255325247|ref|ZP_05366353.1| ribonuclease HII [Corynebacterium tuberculostearicum SK141] gi|255297812|gb|EET77123.1| ribonuclease HII [Corynebacterium tuberculostearicum SK141] Length = 213 Score = 107 bits (268), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 71/195 (36%), Positives = 101/195 (51%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72 E + + + PVAG DE GRGA GP+ +AA ++ I + DSKK++ K+RE+L+ Sbjct: 11 EVALSKAGLGPVAGADEAGRGACCGPITIAACVMPDRPIKELAALTDSKKLTPKQREKLF 70 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A+ S+ IDK I A + + AV L+ P L D IP L Sbjct: 71 PLIKDKAVDWSVVHIGAGDIDKRGIQHANISGMRRAVARLETRPGYVLTDALFIP-GLTQ 129 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +I GD+ + IAAAS++AKV+RD LM +YP YG SH GY T H+ I Sbjct: 130 PHLPIIGGDAAARCIAAASVLAKVSRDHLMHELDARYPGYGLASHKGYGTKAHEAAIAAL 189 Query: 192 GPSCIHRLTFRPLRN 206 G HR+++ +R Sbjct: 190 GACPEHRMSYENVRR 204 >gi|291288314|ref|YP_003505130.1| Ribonuclease H [Denitrovibrio acetiphilus DSM 12809] gi|290885474|gb|ADD69174.1| Ribonuclease H [Denitrovibrio acetiphilus DSM 12809] Length = 184 Score = 107 bits (268), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 72/182 (39%), Positives = 104/182 (57%), Gaps = 12/182 (6%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + GIDEVGRG LAGPVV A++L N + DSKKIS KKR+ + + ++AI I Sbjct: 3 IVGIDEVGRGCLAGPVVAGAVLLPENFSDERLVDSKKISEKKRKIMDGVVRANAIAFGIG 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDLPCQAFAVIKG 139 + S++ ID++ I T A+ A+E + +VI + ++G +P + P K Sbjct: 63 AVSNEDIDRYGIVPCTKKAMMLALEQISVSYDKVIVDAVKLEGVKVPLEHP------FKA 116 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 + +AAASIIAKV RD LM H +PDYG+ S+ GY H + IKE G + +HR Sbjct: 117 EDKFQCVAAASIIAKVYRDALMTKLHINHPDYGWYSNKGYGAKVHIEKIKEIGLTPLHRR 176 Query: 200 TF 201 +F Sbjct: 177 SF 178 >gi|293363996|ref|ZP_06610732.1| ribonuclease HII [Mycoplasma alligatoris A21JP2] gi|292552486|gb|EFF41260.1| ribonuclease HII [Mycoplasma alligatoris A21JP2] Length = 199 Score = 107 bits (268), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 108/185 (58%), Gaps = 4/185 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 + G+DEVGR +LAGP+VVA ++ N I DSK+++ +R+ Y++I AI Sbjct: 15 ILGLDEVGRDSLAGPIVVACVMFPKNYHNPLIKDSKELTKDQRDIAYKEIIKDAITYKYI 74 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI-DGRSIPEDLPCQAFAVIKGDSIS 143 ++D HN K+++ + +++ ++ +I D + + Q+ A+ GD S Sbjct: 75 FLDKDFVDLHNPKKSSIIGMEKLIDSYELDQIDYVITDYEKV--NTKFQSRAIKFGDKYS 132 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 ++IAAASI+AKV RD M +YP Y FD + GY T H + +K+ GPS IHR++++P Sbjct: 133 ITIAAASIVAKVIRDEYMDKMSLEYPIYAFDKNKGYGTKVHLEALKKYGPSPIHRISYKP 192 Query: 204 LRNLS 208 +++ S Sbjct: 193 VKDAS 197 >gi|311739721|ref|ZP_07713556.1| ribonuclease HII [Corynebacterium pseudogenitalium ATCC 33035] gi|311305537|gb|EFQ81605.1| ribonuclease HII [Corynebacterium pseudogenitalium ATCC 33035] Length = 213 Score = 107 bits (268), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 71/195 (36%), Positives = 102/195 (52%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72 E + + + PVAG+DE GRGA GP+ +AA ++ I + DSKK++ K+RE+L+ Sbjct: 11 EVALSKAGLGPVAGVDEAGRGACCGPITIAACVMPDRPIKELAQLTDSKKLTPKQREKLF 70 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A+ S+ IDK I A + + AV L+ P L D IP L Sbjct: 71 PLIKDKAVDWSVVHIGAGDIDKRGIQHANISGMRRAVARLEARPGYVLTDALFIP-GLTQ 129 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +I GD+ + IAAAS++AKV+RD LM +YP YG SH GY T H+ I Sbjct: 130 PHLPIIGGDAAARCIAAASVLAKVSRDHLMHELDVRYPGYGLASHKGYGTKAHEAAIAAL 189 Query: 192 GPSCIHRLTFRPLRN 206 G HR+++ +R Sbjct: 190 GACPEHRMSYENVRR 204 >gi|210633137|ref|ZP_03297704.1| hypothetical protein COLSTE_01617 [Collinsella stercoris DSM 13279] gi|210159291|gb|EEA90262.1| hypothetical protein COLSTE_01617 [Collinsella stercoris DSM 13279] Length = 262 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 67/172 (38%), Positives = 98/172 (56%), Gaps = 9/172 (5%) Query: 34 RGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSASHQYID 92 RG++AGP+ V A+ L +GINDSK++S KRE L +I A + I + ID Sbjct: 85 RGSVAGPLTVCAVCLPDEPRLWGINDSKQLSPAKREILAVRIAECARAVGICHIPPERID 144 Query: 93 KHNIHKATLDAIYHAVENLQVIPRSALIDGR---SIPEDLPCQAFAVIKGDSISLSIAAA 149 + + +A +A+ AV + + P L+DG ++P + V+KGD+ IAAA Sbjct: 145 EIGMARALREAVAGAVADTGLQPDCVLMDGNPLGAVPHERD-----VVKGDATVACIAAA 199 Query: 150 SIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SI+AKVTRD LM +YP Y GY +A+H Q I+E+G S IHR++F Sbjct: 200 SIVAKVTRDELMVEYDAEYPGYHLAQSKGYASAEHIQAIRERGLSPIHRVSF 251 >gi|289426375|ref|ZP_06428118.1| ribonuclease HII [Propionibacterium acnes SK187] gi|289153103|gb|EFD01821.1| ribonuclease HII [Propionibacterium acnes SK187] Length = 188 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 68/173 (39%), Positives = 89/173 (51%), Gaps = 4/173 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELY 72 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L+ Sbjct: 17 ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 76 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A+ +S D+ + +A + + AV L V P L DG + L Sbjct: 77 NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-HGLTV 135 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA H Sbjct: 136 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALH 188 >gi|226356414|ref|YP_002786154.1| ribonuclease HII [Deinococcus deserti VCD115] gi|226318404|gb|ACO46400.1| putative Ribonuclease H (RNase HII) [Deinococcus deserti VCD115] Length = 218 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/199 (34%), Positives = 107/199 (53%), Gaps = 3/199 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + E + + VAG+DE GRGA AGPV VAA+IL + DSK++S +RE Sbjct: 8 PDWAYEREHWRRGYFRVAGVDEAGRGAWAGPVTVAAVILPGLAQEYPFRDSKQLSASQRE 67 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +++ A+ ++ A + I++ NI AT A A+ L P++ + D + Sbjct: 68 ACAQEVRRVALSYAVEHAWPEEIERLNILGATHAAAARALARLDPAPQALITDYLKLRTS 127 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LP A + D++S ++AAAS++AK RD LM ++P YGF H GY H+ + Sbjct: 128 LPLSA--PPRADALSYTVAAASLLAKTERDHLMLELDLQHPGYGFAGHKGYGAPAHRAAL 185 Query: 189 KEKGPSCIHRLTFRPLRNL 207 E G S +HR ++ P+R L Sbjct: 186 AELGVSPVHRRSYAPIRAL 204 >gi|39932425|sp|Q8NNZ4|RNH2_CORGL RecName: Full=Ribonuclease HII; Short=RNase HII gi|21324803|dbj|BAB99426.1| Ribonuclease HII [Corynebacterium glutamicum ATCC 13032] Length = 209 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/187 (36%), Positives = 93/187 (49%), Gaps = 4/187 (2%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREELYEKI 75 + + PVAG+DE GRGA GP+ +AA IL P + DSKK+S RE+L I Sbjct: 1 MSRNGLGPVAGVDEAGRGACCGPISIAACILPDKPIQELAALTDSKKLSASTREKLMPLI 60 Query: 76 TSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A+ S+ S Q ID+ I A + + AV L P L D +P Sbjct: 61 KKHALAWSVIVISAQDIDRFGIQHANISGMRRAVAALGTQPGYVLTDAMKVP-GFTVPYL 119 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +I GD+ + IAAAS++AK TRD +M YP YG + H GY T H ++ G S Sbjct: 120 PIIGGDASARCIAAASVLAKQTRDDIMTDMANDYPHYGLEIHKGYSTKIHMDAVRHHGAS 179 Query: 195 CIHRLTF 201 HR ++ Sbjct: 180 PEHRYSY 186 >gi|268680590|ref|YP_003305021.1| ribonuclease H [Sulfurospirillum deleyianum DSM 6946] gi|268618621|gb|ACZ12986.1| Ribonuclease H [Sulfurospirillum deleyianum DSM 6946] Length = 182 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/192 (35%), Positives = 106/192 (55%), Gaps = 25/192 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + GIDE GRG LAGP+VVA +L +P G+ DSK++S K+RE L+E++ ++A I Sbjct: 2 LCGIDEAGRGCLAGPLVVAGAVLKEPVK---GLADSKQLSEKQREILFERLQNAAEFKIV 58 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQV--IPRSALIDGRSIPEDLPCQAFAV------ 136 H+ +D + + +A+E ++ L+DG F V Sbjct: 59 FCDHEMVDTKGLSAC----LKYAIETIKAHFCEHEILMDGNC--------TFGVSGISTM 106 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 +K D+ ++AASI+AKV+RDR M YP+Y F+ H GY +A H ++I++ G I Sbjct: 107 VKADAKVAEVSAASILAKVSRDRYMCDIAPSYPEYAFEKHKGYGSALHVKMIQQFGYCDI 166 Query: 197 HRLTFRPLRNLS 208 HR +F+ L+ LS Sbjct: 167 HRKSFK-LKALS 177 >gi|154174298|ref|YP_001409163.1| ribonuclease HII [Campylobacter curvus 525.92] gi|189043573|sp|A7H121|RNH2_CAMC5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|112802182|gb|EAT99526.1| ribonuclease HII [Campylobacter curvus 525.92] Length = 183 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 66/176 (37%), Positives = 99/176 (56%), Gaps = 7/176 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 V GIDE GRGALAGP+ VAA +L+ G+NDSKK++ K+R+EL+ IT ++ I Sbjct: 3 VCGIDEAGRGALAGPMAVAACVLNAG--ISGLNDSKKLTPKRRKELFHLITQNSRYLIVY 60 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S++ ID+ + + A+ + L L DG ++ ++K D+ Sbjct: 61 FSNEQIDELGLSECLRRAL--NLFKLYFAGCELLYDGN---QNYGTGVQTMVKADAKVEE 115 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + AASI+AKV+RD LM K YP++G+ SH GY T H + I + G + I R +F Sbjct: 116 VGAASILAKVSRDELMCAWDKIYPNFGYKSHKGYGTKAHLEAITKYGQNEISRKSF 171 >gi|269215611|ref|ZP_06159465.1| ribonuclease HII [Slackia exigua ATCC 700122] gi|269131098|gb|EEZ62173.1| ribonuclease HII [Slackia exigua ATCC 700122] Length = 259 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/182 (37%), Positives = 101/182 (55%), Gaps = 14/182 (7%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87 G+DEVGRG LAGP+ V A++L GI+DSKK++ REEL I ++A+ + Sbjct: 73 GLDEVGRGPLAGPLAVGAVVLPDEPRIEGIDDSKKLAPSAREELSAVIRATAV----AWD 128 Query: 88 HQYIDKHNIH--------KATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++I H+I KA A+E V + L+DG P + + V+KG Sbjct: 129 VEFIGPHDIDELGISACLKAAFSRAVAAIECAGVRIDAILLDGN--PLHIDDREVNVVKG 186 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D+ +I+ ASIIAKV RD MR YP YGF+ + GY +A+H + IK+ G + +HR Sbjct: 187 DARCAAISCASIIAKVERDAYMRSQAVAYPAYGFEENKGYGSAQHIEAIKKHGLTPLHRA 246 Query: 200 TF 201 +F Sbjct: 247 SF 248 >gi|308810146|ref|XP_003082382.1| putative ribonuclease HII (ISS) [Ostreococcus tauri] gi|116060850|emb|CAL57328.1| putative ribonuclease HII (ISS) [Ostreococcus tauri] Length = 299 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 80/211 (37%), Positives = 121/211 (57%), Gaps = 28/211 (13%) Query: 7 PERPHFELEAMVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61 P+R H EK W V G+DE GRG LAGPVV AA + + + +NDSK Sbjct: 98 PDRSH--------EKKHWDAGRHRVVGVDEAGRGPLAGPVVAAACFVPKDCVVDCVNDSK 149 Query: 62 KISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHA---VENLQVIPRSA 118 +++ + REE++E++ ++ I NI + T++A+ + V N+ + Sbjct: 150 QLTEEGREEIFEELMANKEIEYRGI--------NILECTMEAMTRSALDVPNVDWV---- 197 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 LIDG +P+ L +A A++KGD+ +++IAAASIIAKVTRDR+M K++P YGF H G Sbjct: 198 LIDGNRVPKPLEGKAEAIVKGDAKNVAIAAASIIAKVTRDRMMVEIDKEFPMYGFKDHKG 257 Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209 Y T H I + GP HR TF P++++ + Sbjct: 258 YGTKAHMAAIDKYGPCVYHRKTFAPIKHMDL 288 >gi|78185595|ref|YP_378029.1| ribonuclease HII [Synechococcus sp. CC9902] gi|97189417|sp|Q3AW47|RNH2_SYNS9 RecName: Full=Ribonuclease HII; Short=RNase HII gi|78169889|gb|ABB26986.1| RNase HII [Synechococcus sp. CC9902] Length = 199 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/192 (40%), Positives = 106/192 (55%), Gaps = 17/192 (8%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII 81 VAG+DEVGRG L GPV AA++LD G+ DSKK+S K+R L I + Sbjct: 13 VAGVDEVGRGCLFGPVFAAAVVLDEVAEQRLWQAGLTDSKKLSAKRRAGLVPLIEQHCLT 72 Query: 82 -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA----- 135 + AS ID I AT A+ A++ L P L+DG +LP + ++ Sbjct: 73 RGLGQASAHEIDAVGIRGATERAMLRALQKLAHPPNVVLVDG-----NLPLRLWSGSQQT 127 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V+ GDS S +IAAAS++AK RD L+R ++P YG + H GY TA HQ+ + GP+ Sbjct: 128 VVGGDSRSAAIAAASVLAKEARDALIRRLSDQFPGYGLERHAGYGTALHQKALLALGPTS 187 Query: 196 IHRLTFRPLRNL 207 +HR +F LR L Sbjct: 188 LHRRSF--LRRL 197 >gi|302335674|ref|YP_003800881.1| RNase HII [Olsenella uli DSM 7084] gi|301319514|gb|ADK68001.1| RNase HII [Olsenella uli DSM 7084] Length = 259 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/177 (38%), Positives = 95/177 (53%), Gaps = 3/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + G+DEVGRGALAGP+ A+ L I +G+NDSK++S +R L I AI I ++ Sbjct: 74 IVGVDEVGRGALAGPLTACAVALPGEPIIWGLNDSKQLSPARRGALGATIAEHAIAIGVA 133 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 ID + A A+ A+ + V LIDG P + Q A++KGD+ Sbjct: 134 HVEPASIDAVGMSVALRMAMGQAIADAGVDADCVLIDGN--PVHVHPQERALVKGDARVA 191 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AKVTRD LM +YP Y GY + H I+ G + IHR++F Sbjct: 192 CIAAASIVAKVTRDSLMVAYDSEYPGYHLAECKGYGSPAHIDAIRRLGLTPIHRVSF 248 >gi|294102509|ref|YP_003554367.1| Ribonuclease H [Aminobacterium colombiense DSM 12261] gi|293617489|gb|ADE57643.1| Ribonuclease H [Aminobacterium colombiense DSM 12261] Length = 195 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 78/188 (41%), Positives = 111/188 (59%), Gaps = 18/188 (9%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI- 80 +AG+DE GRG LAGPVV AA++L P+ + G+NDSKK++ KRE++++ + S + Sbjct: 6 IAGVDEAGRGPLAGPVVAAAVVLTPSQLDALAALGLNDSKKLTPLKREKIFKAMVSLGVA 65 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-------RSIPEDLPCQA 133 +AS + ID+ NI +ATL A+ +V L + ++DG RS P+ Sbjct: 66 WRAQAASPRRIDQMNILQATLWAMSRSVNKLPHVFEEVIVDGSVLIPGLRSYPQK----- 120 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 A+ KGDS+ +AAAS++AKV RDR M YP Y F H GYPT H++ I E G Sbjct: 121 -AIPKGDSLVPEVAAASVVAKVLRDRAMVALDMAYPQYNFAKHKGYPTEDHRRRITEFGL 179 Query: 194 SCIHRLTF 201 S IHR +F Sbjct: 180 SPIHRRSF 187 >gi|297202855|ref|ZP_06920252.1| ribonuclease HII [Streptomyces sviceus ATCC 29083] gi|197717340|gb|EDY61374.1| ribonuclease HII [Streptomyces sviceus ATCC 29083] Length = 233 Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 71/183 (38%), Positives = 107/183 (58%), Gaps = 1/183 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84 +AG+DEVGRGA AGPV V A + P G+ DSK +S K+R EL E++ T ++ Sbjct: 23 IAGVDEVGRGAWAGPVTVCAAVTGLRRPPQGLTDSKLLSVKRRTELAEELRTWVTSYALG 82 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID + A A A+E L V P + ++DG+ P + VIKGD + Sbjct: 83 HASPEEIDHMGMTAALRIAAVRALEALPVRPDAVILDGKHDYLGTPWKVRTVIKGDQSCV 142 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 ++AAAS+IAKV RD++M + D+GF ++ GYP+ H+ ++ +GP+ HRL++ L Sbjct: 143 AVAAASVIAKVQRDKMMAELGIDHADFGFAANAGYPSPVHKAALEVRGPTPYHRLSWAYL 202 Query: 205 RNL 207 L Sbjct: 203 DAL 205 >gi|224372133|ref|YP_002606505.1| ribonuclease HII [Nautilia profundicola AmH] gi|223589086|gb|ACM92822.1| ribonuclease HII [Nautilia profundicola AmH] Length = 196 Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 71/188 (37%), Positives = 98/188 (52%), Gaps = 16/188 (8%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN----------NIPFGINDSKKISHKKREELYEKI 75 + GIDE GRG +AGP+VVA I N +NDSKK++ KKREEL+E I Sbjct: 5 ICGIDEAGRGPIAGPLVVAGCIFKNEKLKVKSEKWENFLQKLNDSKKLNAKKREELFEII 64 Query: 76 TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF- 134 + I ++ ID+ + A A+ + L+ L DG S + + Sbjct: 65 QETCEYHIVFVDNKTIDEKGLSFAINYALNEIKKTLK--ANKYLFDGNS---NFGVKGIE 119 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +IKGD I+AASI+AKV+RD+ M KYP Y F H GY T +H + IK+ G S Sbjct: 120 TLIKGDGKIKQISAASILAKVSRDKYMLEIADKYPMYNFKKHKGYITKEHIEEIKKNGFS 179 Query: 195 CIHRLTFR 202 IHR ++R Sbjct: 180 DIHRKSYR 187 >gi|160947174|ref|ZP_02094341.1| hypothetical protein PEPMIC_01107 [Parvimonas micra ATCC 33270] gi|158446308|gb|EDP23303.1| hypothetical protein PEPMIC_01107 [Parvimonas micra ATCC 33270] Length = 210 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 76/196 (38%), Positives = 112/196 (57%), Gaps = 11/196 (5%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 ELE + ++ N+ + G+DEVGRG LAGPVV AII+ ++ G+ DSKK+S KKR LY Sbjct: 6 ELENIYKKYNL--IIGVDEVGRGCLAGPVVSCAIIMKKDSKIEGVTDSKKLSKKKRLALY 63 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA------LIDGRSI 125 +KI + I + ID+ NI +A+ A+ A+ N++ + + + D + Sbjct: 64 DKILEECVGYGIGIVDNVKIDEINIKQASRFAMKIAISNIKDLDGNKVSGDFLITDAEKV 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 D+P +I GD +S ++ ASIIAK RD + KKYP+Y F +VGY T H Sbjct: 124 DVDIP--QINLIHGDELSYVVSCASIIAKEYRDSMFVEYEKKYPNYNFIKNVGYGTKAHY 181 Query: 186 QVIKEKGPSCIHRLTF 201 + I E G + IHR+TF Sbjct: 182 KGIDEFGVTPIHRVTF 197 >gi|327404332|ref|YP_004345170.1| RNase HII [Fluviicola taffensis DSM 16823] gi|327319840|gb|AEA44332.1| RNase HII [Fluviicola taffensis DSM 16823] Length = 202 Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 75/184 (40%), Positives = 99/184 (53%), Gaps = 9/184 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPVV A++IL +NDSK++S K R L I A+ S+ Sbjct: 14 AGCDEAGRGCLAGPVVCASVILPKGFSHPLLNDSKQLSEKSRNLLRPIIEQEALAFSVQF 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS--IPEDLPCQAFAVIKGDSIS 143 I NI KA+L ++ A L++ P LIDG + ++P AF IKGD Sbjct: 74 LQPDEIVVLNILKASLTGMHRAAMALKIRPELLLIDGNKTLLSNEIPSIAF--IKGDGKY 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SIAAASI+AK RD M H+ + Y + + GYPT H++ I+ G +CIH RP Sbjct: 132 KSIAAASILAKTYRDEYMEKLHEDFTHYDWKINKGYPTKAHRKAIEIHG-ACIHH---RP 187 Query: 204 LRNL 207 NL Sbjct: 188 GFNL 191 >gi|148259652|ref|YP_001233779.1| ribonuclease H [Acidiphilium cryptum JF-5] gi|166225163|sp|A5FW78|RNH2_ACICJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|146401333|gb|ABQ29860.1| RNase HII [Acidiphilium cryptum JF-5] Length = 199 Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 87/183 (47%), Positives = 109/183 (59%), Gaps = 5/183 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISHKKREE-LYEKITSSAII 81 VAG+DEVGRG LAGPVV AA IL P I I+DSK++S +RE L I S A I Sbjct: 14 VAGVDEVGRGPLAGPVVAAAAILPADLPPEIAALIDDSKRLSPAQREAALAALIESGAAI 73 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S ++AS I + NI +A+L A+ AV L V P L+DG+ P DLP V+ GD Sbjct: 74 SAAAASVAEIARLNILQASLLAMRRAVARLAVRPDHVLVDGQVAP-DLPMPCTPVVGGDG 132 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +SLSIAAASI AK+ RDR M ++YP YG+ + GY T H+ I G + HR F Sbjct: 133 LSLSIAAASIAAKLVRDRAMSRLDRRYPGYGWARNSGYGTKTHRDAILGLGITPHHRRGF 192 Query: 202 RPL 204 PL Sbjct: 193 GPL 195 >gi|311744109|ref|ZP_07717915.1| ribonuclease HII [Aeromicrobium marinum DSM 15272] gi|311313239|gb|EFQ83150.1| ribonuclease HII [Aeromicrobium marinum DSM 15272] Length = 191 Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 73/177 (41%), Positives = 110/177 (62%), Gaps = 4/177 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84 +AG+DE GRGA AGP+V AA+ILD +P G+ DSK ++ +RE +++I T + +S+ Sbjct: 1 MAGVDEAGRGACAGPLVAAAVILD-RPVP-GLADSKLLTPARREACHDEILTRAVDVSVV 58 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S D+ +H+A ++A+ A+ L P L DG + + L A+ KGD ++ Sbjct: 59 VVSAADCDRLGLHRANIEALRRALARLTRRPGYVLTDGFPV-DGLGTPGLAMWKGDRVAA 117 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAAS++AKVTRDRLM H+++P Y F +H GY TA H+ ++ GP HR T+ Sbjct: 118 SIAAASVVAKVTRDRLMVELHEQFPAYDFGTHKGYATAAHEAALRRHGPCAEHRSTY 174 >gi|294675016|ref|YP_003575632.1| ribonuclease HII [Prevotella ruminicola 23] gi|294473926|gb|ADE83315.1| ribonuclease HII [Prevotella ruminicola 23] Length = 209 Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 74/185 (40%), Positives = 108/185 (58%), Gaps = 7/185 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL +NDSK++S KKR +L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPEGYQNELLNDSKQLSEKKRYQLREMIERDAVAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLPCQA-----FAVIKG 139 + + IDK NI A++ A++ A++ L+V P + ++DG R P P ++KG Sbjct: 73 VTPEEIDKINILNASILAMHRALDQLKVRPEAIIVDGNRFKPYKEPANGETLPHTTIVKG 132 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D L+IAAASI+AK RD M ++YP Y + S+ GYPT KH++ IK+ G + HR Sbjct: 133 DGKYLAIAAASILAKTYRDDYMNQLAEEYPQYDWRSNKGYPTKKHREAIKQHGITPYHRK 192 Query: 200 TFRPL 204 ++ L Sbjct: 193 SYNLL 197 >gi|145295936|ref|YP_001138757.1| ribonuclease HII [Corynebacterium glutamicum R] gi|189043588|sp|A4QF39|RNH2_CORGB RecName: Full=Ribonuclease HII; Short=RNase HII gi|140845856|dbj|BAF54855.1| hypothetical protein [Corynebacterium glutamicum R] Length = 209 Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 67/187 (35%), Positives = 92/187 (49%), Gaps = 4/187 (2%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREELYEKI 75 + + PVAG+DE GRGA GP+ +AA IL P + DSK +S RE+L I Sbjct: 1 MSRNGLGPVAGVDEAGRGACCGPISIAACILPDKPIQELAALTDSKNLSASTREKLMPLI 60 Query: 76 TSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A+ S+ S Q ID+ I A + + AV L P L D +P Sbjct: 61 KKHALAWSVIVISAQDIDRFGIQHANISGMRRAVAALDTQPGYVLTDAMKVP-GFTVPYL 119 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +I GD+ + IAAAS++AK TRD +M YP YG + H GY T H ++ G S Sbjct: 120 PIIGGDASARCIAAASVLAKQTRDDIMTDMANDYPHYGLEIHKGYSTKIHMDAVRHHGAS 179 Query: 195 CIHRLTF 201 HR ++ Sbjct: 180 PEHRYSY 186 >gi|167043779|gb|ABZ08470.1| putative Ribonuclease HII [uncultured marine microorganism HF4000_APKG3D20] Length = 252 Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 109/219 (49%), Gaps = 49/219 (22%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-------------INDSKKISHKKREELY 72 + G+DE GRG LAGPVV A++L P G +NDSK+++ ++RE+L+ Sbjct: 19 IVGVDEAGRGCLAGPVVAGAMLL-----PTGFFKKASNRRRCVEVNDSKQLNEEQREKLF 73 Query: 73 EKIT-----SSAIISISSASHQYIDKHNIHKATLDAIYHAVENL---------------- 111 + I + A+ I+ NI AT A+ A++ L Sbjct: 74 KTIERLRDLGELWFTTGEATVNEIESENIVGATCIAMRRAMDALGDKCEGRWGPQDKDEA 133 Query: 112 -----QVIPRS----ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162 I +S L+DG+ + + LP ++KGD++SL +A ASI AKVTRDR+MR Sbjct: 134 EGFFASEIEQSERWIVLVDGKPM-KRLPHAHEGLVKGDTLSLGVAMASIAAKVTRDRIMR 192 Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + YP Y F S+ GY + H + + E GP+ +HR F Sbjct: 193 KLDQSYPAYDFASNKGYGSPNHLRGLDEHGPTEVHRPRF 231 >gi|313680749|ref|YP_004058488.1| RNAse HII [Oceanithermus profundus DSM 14977] gi|313153464|gb|ADR37315.1| RNase HII [Oceanithermus profundus DSM 14977] Length = 197 Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 73/190 (38%), Positives = 112/190 (58%), Gaps = 9/190 (4%) Query: 20 EKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 E+ W VAG+DE GRGALAGPVV AA++L P P+ DSK+++ ++RE+L + + Sbjct: 3 EREFWRQGLRVAGVDEAGRGALAGPVVAAAVVLAPGRHPY--RDSKRLTPRRREQLLDHL 60 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A+ + + S +D+ + +AT A A+ L++ P++ + D + +LP Sbjct: 61 QRHALAWGVGACSAAEVDRLGVLRATHCAAQRALARLRIAPQALVTDYLFLETELPL--L 118 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 A + ++ S S+AAASI+AKV RDR+M H++YP YGF H GY TA+H + GP Sbjct: 119 APARAEAQSPSVAAASILAKVVRDRIMVGLHRRYPGYGFARHKGYGTAEHLACLARLGPC 178 Query: 195 CIHRLTFRPL 204 HR F P+ Sbjct: 179 PQHRRRFAPV 188 >gi|260907251|ref|ZP_05915573.1| ribonuclease HII [Brevibacterium linens BL2] Length = 243 Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 75/209 (35%), Positives = 104/209 (49%), Gaps = 32/209 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKKREELYEKITSSA- 79 V G+DEVGRGALAGPV V + D +P GI+DSK++S R+ +++ A Sbjct: 23 VIGVDEVGRGALAGPVSVGVALFDLREVTAAEVPAGIHDSKQLSALSRQTATDRVNGWAR 82 Query: 80 IISISSASHQYIDKHNI--------HKATLDAIYHAVENLQVIPRSA-LIDGR----SIP 126 S+ S + +D+ + +A + + V + P + L+DG+ S P Sbjct: 83 ATSVGSTTPNELDELGMTMALNLAGRRALSEMLLECVGSTDFPPSTMILLDGKHDWLSAP 142 Query: 127 EDLPC-------------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 L C Q VIKGD IAAASI+AKV RD M K P YG+ Sbjct: 143 LTLDCLGIFGDAADLQLPQVRTVIKGDGSVPVIAAASIVAKVQRDEEMIALAKANPQYGW 202 Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 S+VGY T KH++ I + GPS HR +FR Sbjct: 203 QSNVGYGTMKHRRGIADFGPSIHHRRSFR 231 >gi|309790097|ref|ZP_07684670.1| ribonuclease H [Oscillochloris trichoides DG6] gi|308227822|gb|EFO81477.1| ribonuclease H [Oscillochloris trichoides DG6] Length = 207 Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 78/190 (41%), Positives = 109/190 (57%), Gaps = 7/190 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAII-----LDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 AGIDE GRG AGPVV AA++ ++ G+NDSK++ R L+ +I A+ Sbjct: 19 CAGIDEAGRGCWAGPVVAAAVVLAPSVFQQPDLLAGVNDSKQLDAATRGRLFGQIHHYAL 78 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 + + ID + I AT A+ A+ +L + LID ++P DL A+IKG Sbjct: 79 GVGVGIVPAYLIDAYGIVPATRLAMLSALLSLPCRVDALLIDALTLP-DLSLPQEALIKG 137 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D+ SLSIAAAS++AKVTRD LM+ A +P YGF +H GY TA HQ+ + G +HR Sbjct: 138 DARSLSIAAASVVAKVTRDHLMQTADHVFPGYGFAAHKGYGTAAHQRALAIHGSCALHRR 197 Query: 200 TFRPLRNLSV 209 TF+PL + Sbjct: 198 TFQPLLTYDI 207 >gi|251772986|gb|EES53543.1| Ribonuclease HII [Leptospirillum ferrodiazotrophum] Length = 195 Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 70/183 (38%), Positives = 97/183 (53%), Gaps = 9/183 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKI-TSSAIISI 83 G+DEVGRG LAGPVV A + GI DSK +S +R+EL I T + +S+ Sbjct: 2 GVDEVGRGPLAGPVVAACVFFSAPVSRLSRLGIADSKSLSSDRRDELSRLIHTEADHVSL 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQ--VIPRSAL---IDGRSIPEDLPCQAFAVIK 138 +S +++ N+ +AT A+ A++ L ++ S L +DGR + Q V+ Sbjct: 62 GWSSVDEVNELNVRQATFLAMNRALQQLPPFLMRDSRLCVAVDGRDKIPGVEIQQRTVVG 121 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD LS+AAASI+AKV RD M +P YGF H GY T +H+ I G S HR Sbjct: 122 GDRTVLSVAAASIVAKVARDSYMEKLDALFPGYGFAKHKGYGTEEHRNAILRLGLSPHHR 181 Query: 199 LTF 201 F Sbjct: 182 PLF 184 >gi|149004282|ref|ZP_01829059.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS69] gi|147757776|gb|EDK64790.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS69] Length = 134 Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 56/127 (44%), Positives = 81/127 (63%), Gaps = 2/127 (1%) Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I I +Q ID+ NI++AT A+ A+ L P LID + DLP ++IKGD Sbjct: 3 IGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLPISQTSIIKGD 60 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + G + IHR + Sbjct: 61 ANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTKLGVTPIHRTS 120 Query: 201 FRPLRNL 207 F P+++L Sbjct: 121 FEPVKSL 127 >gi|270700822|ref|ZP_06223058.1| ribonuclease HII [Haemophilus influenzae HK1212] gi|270315846|gb|EFA27947.1| ribonuclease HII [Haemophilus influenzae HK1212] Length = 137 Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 55/125 (44%), Positives = 78/125 (62%) Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+KGDS Sbjct: 8 ALGRAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKGDS 67 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR +F Sbjct: 68 IVAEISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAEFGTLPQHRRSF 127 Query: 202 RPLRN 206 P++ Sbjct: 128 APVKK 132 >gi|34558029|ref|NP_907844.1| ribonuclease HII RNase HII [Wolinella succinogenes DSM 1740] gi|34483747|emb|CAE10744.1| RIBONUCLEASE HII RNASE HII [Wolinella succinogenes] Length = 183 Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 67/183 (36%), Positives = 98/183 (53%), Gaps = 8/183 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + GIDE GRG LAG + VA ++L+ G+ DSKK+S K R LY++I +A I Sbjct: 3 ICGIDEAGRGTLAGSLFVAGVVLEIE--IEGLRDSKKLSKKNRFRLYDEIVQNASFHIVE 60 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF-AVIKGDSISL 144 +S Q +D + ++I QV S ++DG + Q +I+GDS+ Sbjct: 61 SSAQKVDSLGLGICLRESILEICT--QVSADSYIMDGNT---SFGVQGVETLIRGDSLLP 115 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AK ++DR M + +P+YGF H GY T H + I G S HR +F+ Sbjct: 116 CISAASILAKASKDREMERLDRLHPEYGFAKHCGYGTKAHLEAILHLGYSPFHRQSFKLK 175 Query: 205 RNL 207 R L Sbjct: 176 RLL 178 >gi|149194772|ref|ZP_01871867.1| Ribonuclease H [Caminibacter mediatlanticus TB-2] gi|149135195|gb|EDM23676.1| Ribonuclease H [Caminibacter mediatlanticus TB-2] Length = 192 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/185 (37%), Positives = 101/185 (54%), Gaps = 12/185 (6%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG--------INDSKKISHKKREELYEKITS 77 + GIDE GRG +AGP+V+A ++ N + + DSKK+S KKREEL+E I Sbjct: 3 ICGIDEAGRGPIAGPLVMAGVMFLMENGKWKMSNEYFEKLTDSKKLSPKKREELFEVIKE 62 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 ++I I ++ IDK + A + + + + L DG + + +I Sbjct: 63 NSIYHIVFIDNETIDKKGLSFAIKFGLNEIISKINA--KEYLFDGNT--NFGIKKIKPII 118 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD I+AASI+AKV+RDR M KKYP+Y F H GY T +H +IK+ G S IH Sbjct: 119 KGDLKIKEISAASILAKVSRDRFMIEIDKKYPEYNFKKHKGYITKEHINLIKKYGFSDIH 178 Query: 198 RLTFR 202 R +++ Sbjct: 179 RKSYK 183 >gi|225677449|ref|ZP_03788413.1| ribonuclease HII [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590507|gb|EEH11770.1| ribonuclease HII [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 149 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 61/146 (41%), Positives = 90/146 (61%), Gaps = 1/146 (0%) Query: 59 DSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 DSKK++ + R+ LYEKI S A I AS + I+ +NI +AT ++ A+ +L + Sbjct: 1 DSKKLTPQCRQVLYEKIISVAKFGIGMASVEEINSYNILQATKLSMKRALIDLDLELDYV 60 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 L+DG PE + Q +++ GD++S SIAAASI+AKVTRDRLM+ H K+P+Y + + G Sbjct: 61 LVDGNQPPE-VKWQVKSIVNGDNLSTSIAAASIVAKVTRDRLMQELHNKHPEYNWYKNKG 119 Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPL 204 Y T +H I G + HR F P+ Sbjct: 120 YGTKEHLNAIGLYGITEHHRKNFAPI 145 >gi|291448253|ref|ZP_06587643.1| ribonuclease HII [Streptomyces roseosporus NRRL 15998] gi|291351200|gb|EFE78104.1| ribonuclease HII [Streptomyces roseosporus NRRL 15998] Length = 236 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/187 (39%), Positives = 108/187 (57%), Gaps = 6/187 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS--I 83 VAG+DEVGRGA AGPV V A I P G+ DSK ++ ++R EL E + S + + + Sbjct: 23 VAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLLTPRRRAEL-EPVLRSWVTACAL 81 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 AS Q ID + A A A+E L V P + ++DG+ P + VIKGD Sbjct: 82 GDASPQEIDDLGMTAALRLAAVRALEGLPVRPDAVILDGKHDYLGAPWKVRTVIKGDQSC 141 Query: 144 LSIAAASIIAKVTRDRLMR---IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 +++AAAS+IAKV RDR+M A + + FD++ GYP+ H+ ++E+GP+ HRL+ Sbjct: 142 IAVAAASVIAKVHRDRMMAELGAASEDCGGFAFDANAGYPSPVHRAALEERGPTVHHRLS 201 Query: 201 FRPLRNL 207 + L L Sbjct: 202 WSYLDAL 208 >gi|108804231|ref|YP_644168.1| RNase HII [Rubrobacter xylanophilus DSM 9941] gi|108765474|gb|ABG04356.1| RNase HII [Rubrobacter xylanophilus DSM 9941] Length = 204 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/198 (36%), Positives = 110/198 (55%), Gaps = 11/198 (5%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 ER + +A PVAG+DE GRGALAGP+V AA+ILD + G++DSK+++ Sbjct: 9 ERELYAFDAAWAASRRPPVAGVDEAGRGALAGPLVAAAVILD-GGVVEGLDDSKRLARPA 67 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA--LIDGR- 123 RE L ++ SA +S+ +ID+H + A + + AV L +PR+ L DG Sbjct: 68 RERLLPEVLGSAEALSVVVFPAWWIDEHGLGAANREVLRRAVGRL--LPRAGCCLADGNL 125 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + + C A D S ++AAAS++AKV RD M +P YGF+ + GY T + Sbjct: 126 RLGPRIDCLPGA----DGRSAAVAAASVVAKVLRDAAMSALGAAHPGYGFERNCGYGTPE 181 Query: 184 HQQVIKEKGPSCIHRLTF 201 H++ + GP +HRL++ Sbjct: 182 HRRALARLGPCRVHRLSY 199 >gi|46200090|ref|YP_005757.1| ribonuclease HII [Thermus thermophilus HB27] gi|73917834|sp|Q72GR0|RNH2_THET2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|46197718|gb|AAS82130.1| ribonuclease HII [Thermus thermophilus HB27] Length = 203 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/192 (40%), Positives = 108/192 (56%), Gaps = 6/192 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 LEA K + VAG+DE GRGA AGP+VV ++L P PF DSK +S + RE L E Sbjct: 6 LEAPFWRKGLL-VAGLDEAGRGAWAGPIVVGVVVLPPGEYPF--RDSKLLSPRARERLAE 62 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 K+ A+ ++ A +D+ + KATL A A+ +L + P + + D +P Sbjct: 63 KVKEVALAFALGVAEAAEVDRLGVLKATLLAAERALLSLPLAPEALVTDYLPLPTP--LP 120 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 + K D S ++AAASI+AKV RDR+M + YP YGF H GY T +HQ+ + G Sbjct: 121 LLSPPKADEKSPTVAAASILAKVHRDRIMAELDRLYPGYGFARHKGYGTPEHQEALLALG 180 Query: 193 PSCIHRLTFRPL 204 PS +HR F P+ Sbjct: 181 PSPVHRKRFAPV 192 >gi|229815421|ref|ZP_04445753.1| hypothetical protein COLINT_02469 [Collinsella intestinalis DSM 13280] gi|229808954|gb|EEP44724.1| hypothetical protein COLINT_02469 [Collinsella intestinalis DSM 13280] Length = 262 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/172 (37%), Positives = 98/172 (56%), Gaps = 9/172 (5%) Query: 34 RGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYID 92 RG++AGP+ V A+ L +GINDSK+++ KRE L +I A + I + ID Sbjct: 85 RGSVAGPLTVCAVSLPSEPRIWGINDSKQLTPAKREMLAVRIAEVATAVGICHIAPSRID 144 Query: 93 KHNIHKATLDAIYHAVENLQVIPRSALIDGR---SIPEDLPCQAFAVIKGDSISLSIAAA 149 + + +A +A+ AV + + P L+DG ++P + V+KGD+ IAAA Sbjct: 145 EIGMARALREAVAGAVADTGLEPDCVLMDGNPLGAVPNERD-----VVKGDAKVACIAAA 199 Query: 150 SIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SI+AKVTRD LM +YP+Y GY +A+H Q IK+ G S +HR++F Sbjct: 200 SIVAKVTRDELMVELDTEYPEYHLAQSKGYASAEHIQAIKDHGLSPVHRVSF 251 >gi|154148444|ref|YP_001406026.1| ribonuclease HII [Campylobacter hominis ATCC BAA-381] gi|189043574|sp|A7I0I5|RNH2_CAMHC RecName: Full=Ribonuclease HII; Short=RNase HII gi|153804453|gb|ABS51460.1| ribonuclease HII [Campylobacter hominis ATCC BAA-381] Length = 185 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 94/177 (53%), Gaps = 6/177 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + GIDE GRG LAGP+ +A IL N G+ DSKK+S K+RE LYE+I ++ I Sbjct: 3 ICGIDEAGRGPLAGPLHIAGCIL--NKQIEGLKDSKKLSEKRREILYEEIIKNSTYKIVK 60 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF-AVIKGDSISL 144 S IDK + K + V+ + DG S + F ++K D Sbjct: 61 FSAAQIDKFGLSKCLKLGLNELVDFFAPFEVKIIFDGNS---KFGAEGFETMVKADDKIK 117 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++AASI+AKV+RDR+MR K+P Y F + GY + H + I++ G IHR +F Sbjct: 118 EVSAASILAKVSRDRVMRNFDIKFPFYDFAKNKGYGSKAHIEAIQKYGYCEIHRKSF 174 >gi|47459459|ref|YP_016321.1| ribonuclease HII [Mycoplasma mobile 163K] gi|47458789|gb|AAT28110.1| ribonuclease HII [Mycoplasma mobile 163K] Length = 205 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/181 (35%), Positives = 96/181 (53%), Gaps = 1/181 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + DEVGRG+LAGP+VVA + L PN + DSKK++ ++REEL I + Sbjct: 24 IIACDEVGRGSLAGPIVVACVNLKPNFFNEKVRDSKKLNPRQREELSILIKENGSFHFCY 83 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID N +AT A + + ++ + + KGD+ S S Sbjct: 84 INSKEIDLLNPLEATKKATTSCLNKFEEKGSQIILLDYLSNFSYSKKFINIKKGDNTSFS 143 Query: 146 IAAASIIAKVTRDRLM-RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IA+ASI+AKV RD M + + ++ Y F + GY T H + IK GPS IHRL+++PL Sbjct: 144 IASASILAKVERDNFMINLNNDEFDIYDFFKNKGYGTKNHLEAIKIFGPSKIHRLSYKPL 203 Query: 205 R 205 + Sbjct: 204 K 204 >gi|227503370|ref|ZP_03933419.1| ribonuclease HII [Corynebacterium accolens ATCC 49725] gi|227075873|gb|EEI13836.1| ribonuclease HII [Corynebacterium accolens ATCC 49725] Length = 213 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/192 (36%), Positives = 102/192 (53%), Gaps = 6/192 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN---DSKKISHKKREE 70 E + + + PVAG+DE GRGA GP+ +AA IL P I ++ DSKK++ ++RE+ Sbjct: 10 FEVALAKAGLGPVAGVDEAGRGACCGPITIAACIL-PERIVGELDTLTDSKKLTPRQREK 68 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A+ S+ IDK I A + AV L+ P L D IP L Sbjct: 69 LFPIIKDKAVDWSVVHIGAGDIDKRGIQHANTSGMRRAVARLEQRPGYVLSDALFIP-GL 127 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++ GD+ + IAAAS++AKV+RD LM +++P YG H GY T H+ I Sbjct: 128 TQPHLPIVGGDAAARCIAAASVLAKVSRDHLMLDLDERFPGYGLAGHKGYGTKAHEAAIA 187 Query: 190 EKGPSCIHRLTF 201 G S HR+++ Sbjct: 188 ALGASPEHRMSY 199 >gi|296270667|ref|YP_003653299.1| ribonuclease H [Thermobispora bispora DSM 43833] gi|296093454|gb|ADG89406.1| Ribonuclease H [Thermobispora bispora DSM 43833] Length = 253 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/200 (34%), Positives = 107/200 (53%), Gaps = 10/200 (5%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD---PNNIP------FGINDSKK 62 + +E +R +AG+DEVGRGA AGPVVV + D P +P + DSK Sbjct: 28 YAIEEELRAAGAVRIAGLDEVGRGAWAGPVVVCVAVTDLSPPPELPGRGGRSVRLTDSKL 87 Query: 63 ISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 ++ RE E + I +S Q ID+ + +A A A+ L P + ++D Sbjct: 88 LTRASREAFAEVLPGWLNCHGIGESSPQEIDELGMTEALRLAAERALAALPYRPDAIILD 147 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 G+ P A ++ D S+S+AAAS++AKV RDRLM +++P+YGF + GYP+ Sbjct: 148 GKHDFLRGPWTARCEVQADRRSVSVAAASVLAKVYRDRLMAALGEEHPEYGFADNAGYPS 207 Query: 182 AKHQQVIKEKGPSCIHRLTF 201 H++ + E GP+ HRL++ Sbjct: 208 PVHRRALAEHGPTPHHRLSW 227 >gi|294056229|ref|YP_003549887.1| Ribonuclease H [Coraliomargarita akajimensis DSM 45221] gi|293615562|gb|ADE55717.1| Ribonuclease H [Coraliomargarita akajimensis DSM 45221] Length = 238 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/211 (36%), Positives = 104/211 (49%), Gaps = 35/211 (16%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPN---NIPF-----GINDSKKISHKKREELY--- 72 W + GIDE GRG LAGPVV A +L + N+ INDSK++S RE Y Sbjct: 17 WLI-GIDEAGRGCLAGPVVAGACVLADDFFDNVSALERSARINDSKQLSADAREGQYRLL 75 Query: 73 EKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS------------- 117 E + +I +++S + I + NI A A+ AV+ L V Sbjct: 76 EDLQGEGLIDFAVASGTVTEIAELNILGANRLAMQRAVDALAVRATGWELPVLGAEDPLF 135 Query: 118 -------ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 ++DGR + + P ++KGD SL+IA ASI AKVTRDRLM ++YP Sbjct: 136 AAQAAVKLIVDGRPL-KPWPYAHEGIVKGDGKSLAIAMASIAAKVTRDRLMLELDQQYPQ 194 Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 YGF H GY T +H+ + +GP HR F Sbjct: 195 YGFAQHKGYGTKQHRHALAAEGPCPEHRELF 225 >gi|75764884|ref|ZP_00744243.1| Ribonuclease HII [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74487629|gb|EAO51486.1| Ribonuclease HII [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 167 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/152 (44%), Positives = 98/152 (64%), Gaps = 3/152 (1%) Query: 57 INDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP 115 + DSKK+S KRE Y++I AI I + S Q ID NI++AT A+ AV L P Sbjct: 15 LYDSKKLSEAKRERFYDEIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVAYLSCTP 74 Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 + LID +P +P ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP+YGF+ Sbjct: 75 QHLLIDAMKLPTPIP--QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPEYGFEQ 132 Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 H+GY T +H + I+ G HR +F P++++ Sbjct: 133 HMGYGTKQHLEAIEVHGVLDEHRKSFAPIKDM 164 >gi|306836387|ref|ZP_07469365.1| ribonuclease HII [Corynebacterium accolens ATCC 49726] gi|304567747|gb|EFM43334.1| ribonuclease HII [Corynebacterium accolens ATCC 49726] Length = 213 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/192 (36%), Positives = 101/192 (52%), Gaps = 6/192 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN---DSKKISHKKREE 70 E + + PVAG+DE GRGA GP+ +AA IL P I ++ DSKK++ ++RE+ Sbjct: 10 FEVALARAGLGPVAGVDEAGRGACCGPITIAACIL-PERIVGELDTLTDSKKLTPRQREK 68 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A+ S+ IDK I A + AV L+ P L D IP L Sbjct: 69 LFPIIKDKAVDWSVVHIGAGDIDKRGIQHANTSGMRRAVARLEQRPGYVLSDALFIP-GL 127 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++ GD+ + IAAAS++AKV+RD LM +++P YG H GY T H+ I Sbjct: 128 TQPHLPIVGGDAAARCIAAASVLAKVSRDHLMLDLDERFPGYGLAGHKGYGTKAHEAAIA 187 Query: 190 EKGPSCIHRLTF 201 G S HR+++ Sbjct: 188 ALGASPEHRMSY 199 >gi|315502439|ref|YP_004081326.1| ribonuclease h [Micromonospora sp. L5] gi|315409058|gb|ADU07175.1| Ribonuclease H [Micromonospora sp. L5] Length = 291 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/194 (35%), Positives = 107/194 (55%), Gaps = 6/194 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN---DSKKISHKKR 68 + LE ++ + VAG DE GRGA AGP+V AA IL P I+ DSK ++ R Sbjct: 16 YALERALQRRGFRHVAGADEAGRGACAGPLVAAAAIL-PEGRRGEIDELADSKLLTPAAR 74 Query: 69 EELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E +++++ + A+ ++ + +D +H L A+ A+ +L P L DG + + Sbjct: 75 ERVHDEVVARALAYAVVVIPAEEVDARGLHVCNLAAMRRALASLTTRPEYVLTDGFGV-D 133 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L AV KGD ++ +AAAS++AKVTRDR+M ++P YGF H GY TA+H Sbjct: 134 GLDVPGLAVWKGDRVAACVAAASVLAKVTRDRMMVELDGRFPGYGFAEHKGYITAEHSAA 193 Query: 188 IKEKGPSCIHRLTF 201 ++ GP HR ++ Sbjct: 194 LRALGPCREHRFSY 207 >gi|254391049|ref|ZP_05006257.1| ribonuclease HII [Streptomyces clavuligerus ATCC 27064] gi|294815520|ref|ZP_06774163.1| Ribonuclease [Streptomyces clavuligerus ATCC 27064] gi|326443870|ref|ZP_08218604.1| ribonuclease HII [Streptomyces clavuligerus ATCC 27064] gi|197704744|gb|EDY50556.1| ribonuclease HII [Streptomyces clavuligerus ATCC 27064] gi|294328119|gb|EFG09762.1| Ribonuclease [Streptomyces clavuligerus ATCC 27064] Length = 235 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/177 (39%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRGA AGPV V A I P G+ DSK IS ++R+EL ++ ++ Sbjct: 23 IAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLISPRRRDELAAELERWVTAHALG 82 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS Q ID + A A A++ L V P + ++DG+ P VIKGD + Sbjct: 83 HASPQEIDDLGMTAALRLAACRALDGLPVRPEAVILDGKHDYLGAPWTVRTVIKGDRSCV 142 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++AAAS+IAKV RD LM +++ D+ F + GYP+ H+ V++E+GP+ HRL++ Sbjct: 143 AVAAASVIAKVRRDALMAELPQEFADFAFADNAGYPSPVHKAVLEERGPTPYHRLSW 199 >gi|257459902|ref|ZP_05625008.1| ribonuclease HII [Campylobacter gracilis RM3268] gi|257442754|gb|EEV17891.1| ribonuclease HII [Campylobacter gracilis RM3268] Length = 187 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 91/177 (51%), Gaps = 4/177 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + GIDE GRG LAGP+ VA +L G+ DSKK+S K+REELY +I ++ I Sbjct: 5 ICGIDEAGRGCLAGPLCVAGCVLQRE--IAGLADSKKLSEKRREELYARIIENSRYKIVE 62 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S +D+ + A+ + + DG + Q ++K D+ Sbjct: 63 ISSAQVDEAGLSSCLRSALEQILAYFMGFSGQIIYDGNATFGVRGLQT--LVKADAQIAE 120 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 ++AASI+AKVTRDR M ++YP YGF + GY + H I+ G + HR +++ Sbjct: 121 VSAASILAKVTRDRTMNELARRYPQYGFAQNKGYGSRAHIAAIERYGLTPFHRASYK 177 >gi|225155690|ref|ZP_03724178.1| Ribonuclease H [Opitutaceae bacterium TAV2] gi|224803484|gb|EEG21719.1| Ribonuclease H [Opitutaceae bacterium TAV2] Length = 278 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/217 (35%), Positives = 112/217 (51%), Gaps = 39/217 (17%) Query: 28 GIDEVGRGALAGPVVVAAII-----LDPNNIPFG---INDSKKISHKKREELYEKITSSA 79 G+DE GRGALAGPVV AA++ L+ + +NDSK++S +R+ L + + A Sbjct: 48 GVDEAGRGALAGPVVAAAVLVRRVFLESRWVAHNASRVNDSKQLSAPERDALAFEFETLA 107 Query: 80 I-----ISISSASHQYIDKHNIHKATLDAIYHAVENL--------QVIP-----RSAL-- 119 + + A I++ NI AT A+ A+E + QV P + L Sbjct: 108 VENAIRVGCGVAEVSEIEQFNILGATKLAMRRALECIHPPEAFQQQVEPDLFSTEAELAA 167 Query: 120 ----IDGRSIPEDLPCQAF-----AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 + R I + LP ++F ++KGD+ SL IA ASIIAKVTRDRL+ ++P Sbjct: 168 WRNRVSCRIIIDGLPLKSFPYPHLGIVKGDARSLCIAMASIIAKVTRDRLLTELDARHPG 227 Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 YGF H GY T +H++ + GP HR F LR L Sbjct: 228 YGFAQHKGYGTEEHREAVLRLGPCVQHRGLF--LRKL 262 >gi|297624822|ref|YP_003706256.1| Ribonuclease H [Truepera radiovictrix DSM 17093] gi|297166002|gb|ADI15713.1| Ribonuclease H [Truepera radiovictrix DSM 17093] Length = 211 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 77/205 (37%), Positives = 115/205 (56%), Gaps = 7/205 (3%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 +IP P + LE + ++ +AG+DE GRGALAGPVV AA++L + PF DSK +S Sbjct: 2 TIPTPPDWRLEHTLWQRGYGVLAGVDEAGRGALAGPVVAAAVVLPRGDHPF--RDSKTLS 59 Query: 65 HKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALID 121 RE L E++ A+ ++ AS +D+ N+ +AT A A+ L +V + D Sbjct: 60 PAARETLAEEVRRRALAWAVGCASASEVDRLNVLQATHLAAQRALCALAGRVAVDGLVTD 119 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 +P P AV K D+ S+ +AAAS++AK RD LMR ++YP YGF H GY + Sbjct: 120 FLKLP--FPGPVLAVPKADATSVQVAAASLLAKTVRDALMRRLGERYPAYGFARHKGYGS 177 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRN 206 + H + + GP HR +F P++ Sbjct: 178 STHLRALAAHGPCPEHRRSFGPVQR 202 >gi|182435502|ref|YP_001823221.1| ribonuclease HII [Streptomyces griseus subsp. griseus NBRC 13350] gi|238688997|sp|B1VXS2|RNH2_STRGG RecName: Full=Ribonuclease HII; Short=RNase HII gi|178464018|dbj|BAG18538.1| putative ribonuclease HII [Streptomyces griseus subsp. griseus NBRC 13350] Length = 236 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 70/180 (38%), Positives = 105/180 (58%), Gaps = 4/180 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRGA AGPV V A + P G+ DSK ++ ++R EL + S ++ Sbjct: 23 VAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLLTPRRRAELDPVLRSWVTAYALG 82 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS Q ID + A A A+E L V P + ++DG+ +P + VIKGD + Sbjct: 83 DASPQEIDDLGMTAALRLAAVRALEGLPVRPDAVILDGKHDYLGVPWKVRTVIKGDQSCI 142 Query: 145 SIAAASIIAKVTRDRLMR---IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++AAAS+IAKV RDR+M A + D+ F ++ GYP+ H+ ++E+GP+ HRL++ Sbjct: 143 AVAAASVIAKVHRDRMMAELGAASEDCADFDFGANAGYPSPVHRAALEERGPTAHHRLSW 202 >gi|283953657|ref|ZP_06371188.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 414] gi|283794698|gb|EFC33436.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 414] Length = 198 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/197 (34%), Positives = 110/197 (55%), Gaps = 8/197 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F+ + ++ E ++ + GIDE GRGALAGP+++AA L N G+ DSKK+S KKR Sbjct: 9 KTLFDTKELLNEFDINLI-GIDEAGRGALAGPMMMAACKL--NKQLDGLCDSKKLSEKKR 65 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 EELYE I ++ I + S + ID + + ++ + + L DG + + Sbjct: 66 EELYEIIIKNSSYLILAFSSEQIDALGLSTCLKTGLKLIKKHFKT-ENNFLYDGNT---N 121 Query: 129 LPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L IK D+ L ++AASI+AKV++DR+M K +P Y F+ + Y T H+++ Sbjct: 122 LGINGIKTQIKADASILQVSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKEL 181 Query: 188 IKEKGPSCIHRLTFRPL 204 I + G +HR +F+ L Sbjct: 182 IAKFGICKLHRKSFKLL 198 >gi|302865895|ref|YP_003834532.1| ribonuclease H [Micromonospora aurantiaca ATCC 27029] gi|302568754|gb|ADL44956.1| Ribonuclease H [Micromonospora aurantiaca ATCC 27029] Length = 291 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 69/194 (35%), Positives = 107/194 (55%), Gaps = 6/194 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN---DSKKISHKKR 68 + LE ++ + VAG DE GRGA AGP+V AA IL P I+ DSK ++ R Sbjct: 16 YALERALQRRGFRHVAGADEAGRGACAGPLVAAAAIL-PEGRRGEIDELADSKLLTPAAR 74 Query: 69 EELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E +++++ + A+ ++ + +D +H L A+ A+ +L P L DG + + Sbjct: 75 ERVHDEVVARALAYAVVVIPAEEVDARGLHVCNLAAMRRALASLTTRPEYVLTDGFGV-D 133 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L AV KGD ++ +AAAS++AKVTRDR+M ++P YGF H GY TA+H Sbjct: 134 GLDVPGLAVWKGDRVAACVAAASVLAKVTRDRIMVELDGRFPGYGFAEHKGYITAEHSAA 193 Query: 188 IKEKGPSCIHRLTF 201 ++ GP HR ++ Sbjct: 194 LRALGPCREHRFSY 207 >gi|69246757|ref|ZP_00604105.1| Ribonuclease H [Enterococcus faecium DO] gi|68195111|gb|EAN09571.1| Ribonuclease H [Enterococcus faecium DO] Length = 151 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 56/125 (44%), Positives = 79/125 (63%), Gaps = 2/125 (1%) Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I I Q ID NI++A+ A+ AVE L ++P LID ++ DLP Q +IKGD Sbjct: 25 IGIGIVDQQTIDDVNIYEASKLAMIQAVEKLSIVPSYLLIDAMTL--DLPIQQEKIIKGD 82 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + S+SIAAASIIAKV RD+LM+ YP YGF + GY T +H + ++ +G + IHR + Sbjct: 83 ARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGYGTKEHLEGLERQGITPIHRKS 142 Query: 201 FRPLR 205 F P++ Sbjct: 143 FAPVK 147 >gi|153951148|ref|YP_001397283.1| ribonuclease HII [Campylobacter jejuni subsp. doylei 269.97] gi|166225179|sp|A7H1A3|RNH2_CAMJD RecName: Full=Ribonuclease HII; Short=RNase HII gi|152938594|gb|ABS43335.1| ribonuclease HII [Campylobacter jejuni subsp. doylei 269.97] Length = 191 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/203 (35%), Positives = 112/203 (55%), Gaps = 20/203 (9%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F+ + ++ E ++ + GIDE GRGALAGP+++AA L N G+ DSKK+S KKR Sbjct: 2 KTLFDTKELLNEFDINLI-GIDEAGRGALAGPMMMAACKL--NKKLDGLCDSKKLSEKKR 58 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR------SALIDG 122 EELYE I ++ I + S + ID TL L++I + + L DG Sbjct: 59 EELYEIIIKNSNYLILAFSSEQID-------TLGLSTCLKTGLKLIKKHFKAENNFLYDG 111 Query: 123 RSIPEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + +L IK D+ L ++AASI+AKV++D++M K +P Y F+ + Y T Sbjct: 112 NT---NLGINGIKTQIKADTSILQVSAASILAKVSKDKVMNFLAKDFPCYEFEKNKAYGT 168 Query: 182 AKHQQVIKEKGPSCIHRLTFRPL 204 H++VI + G +HR +F+ L Sbjct: 169 KAHKEVIAKFGICKLHRKSFKLL 191 >gi|57236923|ref|YP_178038.1| ribonuclease HII [Campylobacter jejuni RM1221] gi|86150560|ref|ZP_01068784.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CF93-6] gi|86152389|ref|ZP_01070599.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 260.94] gi|121612583|ref|YP_999729.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 81-176] gi|148926828|ref|ZP_01810507.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CG8486] gi|218561703|ref|YP_002343482.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315123625|ref|YP_004065629.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|11387106|sp|Q9PJA1|RNH2_CAMJE RecName: Full=Ribonuclease HII; Short=RNase HII gi|73621839|sp|Q5HXE7|RNH2_CAMJR RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225180|sp|A1VX88|RNH2_CAMJJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|57165727|gb|AAW34506.1| ribonuclease HII [Campylobacter jejuni RM1221] gi|85839012|gb|EAQ56277.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CF93-6] gi|85840686|gb|EAQ57938.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 260.94] gi|87248943|gb|EAQ71905.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 81-176] gi|112359409|emb|CAL34191.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145844553|gb|EDK21660.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CG8486] gi|284925313|gb|ADC27665.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni IA3902] gi|315017347|gb|ADT65440.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315057450|gb|ADT71779.1| Ribonuclease HII [Campylobacter jejuni subsp. jejuni S3] Length = 191 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/197 (34%), Positives = 109/197 (55%), Gaps = 8/197 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F+ + ++ E ++ + GIDE GRGALAGP+++AA L N G+ DSKK+S KKR Sbjct: 2 KTLFDTKELLNEFDINLI-GIDEAGRGALAGPMMMAACKL--NKQLDGLCDSKKLSEKKR 58 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 EELYE I ++ I + S + ID + + ++ + + L DG + + Sbjct: 59 EELYEIIIKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFKT-ENNFLYDGNT---N 114 Query: 129 LPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L IK D+ L ++AASI+AKV++DR+M K +P Y F+ + Y T H++ Sbjct: 115 LGINGIKTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKEF 174 Query: 188 IKEKGPSCIHRLTFRPL 204 I + G +HR +F+ L Sbjct: 175 IAKFGICKLHRKSFKLL 191 >gi|157414331|ref|YP_001481587.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 81116] gi|172046982|sp|A8FJH3|RNH2_CAMJ8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|157385295|gb|ABV51610.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 81116] gi|315931297|gb|EFV10266.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 327] Length = 191 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/197 (34%), Positives = 110/197 (55%), Gaps = 8/197 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F+ + ++ E ++ + GIDE GRGALAGP+++AA L N G+ DSKK+S KKR Sbjct: 2 KTLFDTKELLNEFDINLI-GIDEAGRGALAGPMMMAACKL--NKKLDGLCDSKKLSEKKR 58 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 EELYE I ++ I + S + ID + + ++ + + L DG + + Sbjct: 59 EELYEIIIKNSNYLILAFSSEQIDALGLSTCLKTGLKLIKKHFKT-ENNFLYDGNT---N 114 Query: 129 LPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L IK D+ L ++AASI+AKV++DR+M K +P Y F+ + Y T H+++ Sbjct: 115 LGINGIKTQIKADASILQVSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKEL 174 Query: 188 IKEKGPSCIHRLTFRPL 204 I + G +HR +F+ L Sbjct: 175 IAKFGICKLHRKSFKLL 191 >gi|297191618|ref|ZP_06909016.1| ribonuclease HII [Streptomyces pristinaespiralis ATCC 25486] gi|197719359|gb|EDY63267.1| ribonuclease HII [Streptomyces pristinaespiralis ATCC 25486] Length = 233 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 70/177 (39%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAGIDEVGRGA AGPV V A + P G+ DSK I+ K+R E+ E + ++ Sbjct: 23 VAGIDEVGRGAWAGPVTVCAAVTGLRRPPVGLTDSKLITPKRRAEMAELLEGWVTAHALG 82 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID+ + A A A+E L V P + ++DG+ +P Q VIKGD + Sbjct: 83 HASPEEIDELGMTAALRLAAGRALEGLPVRPDAIILDGKHDYLGVPWQVRTVIKGDQSCV 142 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++AAAS+IAKV RD +M +++ +GF + GYP+ H+ ++E GP+ HRL++ Sbjct: 143 AVAAASVIAKVHRDAMMAQLPEEFTAFGFADNAGYPSPVHKAALRELGPTPYHRLSW 199 >gi|283956188|ref|ZP_06373673.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 1336] gi|283792342|gb|EFC31126.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 1336] Length = 191 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 68/197 (34%), Positives = 110/197 (55%), Gaps = 8/197 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F+ + ++ E ++ + GIDE GRGALAGP+++AA L N G+ DSKK+S KKR Sbjct: 2 KTLFDTKELLNEFDI-NLIGIDEAGRGALAGPMMMAACKL--NKKLDGLCDSKKLSEKKR 58 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 EELYE I ++ I + S + ID + + ++ + + L DG + + Sbjct: 59 EELYEIIIKNSNYLILAFSSEQIDALGLSTCLKTGLKLIKKHFKT-ENNFLYDGNT---N 114 Query: 129 LPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L IK D+ L ++AASI+AKV++DR+M K +P Y F+ + Y T H+++ Sbjct: 115 LGINGIKTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPYYEFEKNKAYGTKAHKKL 174 Query: 188 IKEKGPSCIHRLTFRPL 204 I + G +HR +F+ L Sbjct: 175 IAKFGICKLHRKSFKLL 191 >gi|86153986|ref|ZP_01072188.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597652|ref|ZP_01100885.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 84-25] gi|85842524|gb|EAQ59737.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni HB93-13] gi|88189956|gb|EAQ93932.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 84-25] gi|307746973|gb|ADN90243.1| Ribonuclease HII [Campylobacter jejuni subsp. jejuni M1] gi|315929937|gb|EFV09094.1| Ribonuclease HII [Campylobacter jejuni subsp. jejuni 305] Length = 191 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 68/197 (34%), Positives = 109/197 (55%), Gaps = 8/197 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F+ + ++ E ++ + GIDE GRGALAGP+++AA L N G+ DSKK+S KKR Sbjct: 2 KTLFDTKELLNEFDINLI-GIDEAGRGALAGPMMMAACKL--NKQLDGLCDSKKLSEKKR 58 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 EELYE I ++ I + S + ID + + ++ + + L DG + + Sbjct: 59 EELYEIIIKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFKT-ENNFLYDGNT---N 114 Query: 129 LPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L IK D+ L ++AASI+AKV++DR+M K +P Y F+ + Y T H++ Sbjct: 115 LGINGIKTQIKADASILQVSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKEF 174 Query: 188 IKEKGPSCIHRLTFRPL 204 I + G +HR +F+ L Sbjct: 175 IAKFGICKLHRKSFKLL 191 >gi|255020983|ref|ZP_05293038.1| Ribonuclease HII [Acidithiobacillus caldus ATCC 51756] gi|254969588|gb|EET27095.1| Ribonuclease HII [Acidithiobacillus caldus ATCC 51756] Length = 168 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 66/166 (39%), Positives = 95/166 (57%), Gaps = 7/166 (4%) Query: 41 VVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKA 99 + VAA+IL +P G+ DSKK+S +R L +KI + A +I+SA I+++N+ +A Sbjct: 1 MTVAAVILA-RPLP-GLADSKKLSPLRRAVLSQKIRAEAWAWAIASAGSWEIERYNVLQA 58 Query: 100 TLDAIYHAVENLQVIPRSALIDG-RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD 158 TL A+ A+ L P +DG R++P QA +++GDS +IAAASI+AK RD Sbjct: 59 TLRAMDRALRALPPGPWRVAVDGNRALPH---WQAETLVRGDSRLDAIAAASILAKTARD 115 Query: 159 RLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 M + P Y F H GYPT H ++ GPS IHR F P+ Sbjct: 116 AEMDALDRHLPGYAFGQHRGYPTPLHLAALQRLGPSLIHRRGFAPV 161 >gi|294786711|ref|ZP_06751965.1| ribonuclease HII [Parascardovia denticolens F0305] gi|294485544|gb|EFG33178.1| ribonuclease HII [Parascardovia denticolens F0305] Length = 240 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 121/229 (52%), Gaps = 40/229 (17%) Query: 10 PHFELE-AMVREKN----MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GIND 59 P +++E A+++E + W + G DEVGRG LAGPV+V A + +IP G+ D Sbjct: 12 PSWQVEEALLQEADDRRPQW-IIGCDEVGRGCLAGPVMVGACLFRAEDIPLLPIPAGLKD 70 Query: 60 SKKISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKA-----------TLDAIYHA 107 SK ++ KKRE L + + + +A ++ S ++ ID + I +A + + A Sbjct: 71 SKLLTPKKRESLLDPLRAWAAGTAVGSCDNRGIDSYGIMEALGAAAIQAIDQAVFGLIGA 130 Query: 108 VENLQVIP-----------RSALI-DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKV 155 + + VI RS L R P+D+ V+KGD +A AS+IAKV Sbjct: 131 GDRVAVILDGPYDYISPAFRSLLAPQARIDPDDM--TVTTVVKGDRRCACVAGASVIAKV 188 Query: 156 TRDRLMRIAHKKYPD---YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 TRDR M ++P+ Y + + GY +A+H++ IKE+GPS HRL++ Sbjct: 189 TRDRYMVDLADRHPEWEAYAWRKNKGYGSAEHREAIKEQGPSPYHRLSW 237 >gi|315226326|ref|ZP_07868114.1| ribonuclease HII 2 [Parascardovia denticolens DSM 10105] gi|315120458|gb|EFT83590.1| ribonuclease HII 2 [Parascardovia denticolens DSM 10105] Length = 250 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 121/229 (52%), Gaps = 40/229 (17%) Query: 10 PHFELE-AMVREKN----MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GIND 59 P +++E A+++E + W + G DEVGRG LAGPV+V A + +IP G+ D Sbjct: 22 PSWQVEEALLQEADDRRPQW-IIGCDEVGRGCLAGPVMVGACLFRAEDIPLLPIPAGLKD 80 Query: 60 SKKISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKA-----------TLDAIYHA 107 SK ++ KKRE L + + + +A ++ S ++ ID + I +A + + A Sbjct: 81 SKLLTPKKRESLLDPLRAWAAGTAVGSCDNRGIDSYGIMEALGAAAIQAIDQAVFGLIGA 140 Query: 108 VENLQVIP-----------RSALI-DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKV 155 + + VI RS L R P+D+ V+KGD +A AS+IAKV Sbjct: 141 GDRVAVILDGPYDYISPAFRSLLAPQARIDPDDM--TVTTVVKGDRRCACVAGASVIAKV 198 Query: 156 TRDRLMRIAHKKYPD---YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 TRDR M ++P+ Y + + GY +A+H++ IKE+GPS HRL++ Sbjct: 199 TRDRYMVDLADRHPEWEAYAWRKNKGYGSAEHREAIKEQGPSPYHRLSW 247 >gi|152965373|ref|YP_001361157.1| ribonuclease H [Kineococcus radiotolerans SRS30216] gi|189043607|sp|A6W7V4|RNH2_KINRD RecName: Full=Ribonuclease HII; Short=RNase HII gi|151359890|gb|ABS02893.1| Ribonuclease H [Kineococcus radiotolerans SRS30216] Length = 262 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 102/219 (46%), Gaps = 26/219 (11%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKK 67 P LE VAG+DEVGRG+LAGPV V +++D P G+ DSK ++ Sbjct: 10 PSLRLERQFLRAGHALVAGVDEVGRGSLAGPVSVGVLVVDAATRTAPTGLRDSKLLTPAA 69 Query: 68 REELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR--- 123 RE L K+ A+ S + A ID I A A A+ L V P ++DG Sbjct: 70 REALAPKVRRWAVASAVGHAEPGEIDAVGIVAALRLAGRRALAQLPVPPDLVILDGNHDW 129 Query: 124 -SIPED----------------LPCQAFAV---IKGDSISLSIAAASIIAKVTRDRLMRI 163 S P + LPC A AV +K D ++A AS++AK TRD LM Sbjct: 130 LSDPREPSLLDALDGLGDPAAGLPCPAPAVTTRVKADVTCAAVAGASVLAKTTRDALMTA 189 Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 H+++P YG+ + GY H + + G HR ++R Sbjct: 190 RHEEFPHYGWAGNKGYSAPDHLEALAAHGACPQHRRSWR 228 >gi|303232810|ref|ZP_07319495.1| ribonuclease HII [Atopobium vaginae PB189-T1-4] gi|302481296|gb|EFL44371.1| ribonuclease HII [Atopobium vaginae PB189-T1-4] Length = 271 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 69/177 (38%), Positives = 101/177 (57%), Gaps = 3/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 V G+DEVGRG LAGP+ V A++L+ +G+NDSK++S + R EL +I A +++ Sbjct: 91 VIGVDEVGRGPLAGPLSVGAVVLNDEPCIWGLNDSKQLSSRTRSELAARIRKEARAVAVV 150 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 ID+ I A +A+ A+E + + P + LIDG P + ++KGD Sbjct: 151 HIPPAVIDEKGISCALKEAMRTAIERIDIAPTAVLIDGN--PVHVHPLEQTIVKGDCKIA 208 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +IAAASI+AKV RD M +YP Y F + GY +++H IK G S IHR +F Sbjct: 209 AIAAASIVAKVERDAYMSSISDQYPQYHFAQNKGYGSSEHIHAIKTYGLSAIHRKSF 265 >gi|113953937|ref|YP_729607.1| ribonuclease HII [Synechococcus sp. CC9311] gi|122945826|sp|Q0ID65|RNH2_SYNS3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|113881288|gb|ABI46246.1| ribonuclease HII [Synechococcus sp. CC9311] Length = 197 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 68/192 (35%), Positives = 106/192 (55%), Gaps = 17/192 (8%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-I 80 +AG+DEVGRG L GPV AA++L + G+ DSK ++ +R L I + A Sbjct: 9 IAGVDEVGRGCLFGPVFAAAVVLSDHAAEHLQAAGLTDSKALTPSRRAALVPLIEAHAHA 68 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF-----A 135 + +S + +D+ I AT A+ A++ L P+ L+DG LP + + Sbjct: 69 WGLGQSSARAVDRDGIRSATEQAMLCALQRLPCRPQLVLVDG-----VLPLRLWEGSQRT 123 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 +++GDS +IAAAS++AK RD L+R ++P YG + H GY TA+H+ + GP+ Sbjct: 124 IVRGDSSHAAIAAASVLAKEARDALIRRLSNRFPGYGLERHAGYGTAQHRAALLACGPTP 183 Query: 196 IHRLTFRPLRNL 207 +HR +F LR L Sbjct: 184 LHRHSF--LRKL 193 >gi|326776139|ref|ZP_08235404.1| Ribonuclease H [Streptomyces cf. griseus XylebKG-1] gi|326656472|gb|EGE41318.1| Ribonuclease H [Streptomyces cf. griseus XylebKG-1] Length = 236 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 69/180 (38%), Positives = 105/180 (58%), Gaps = 4/180 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRGA AGPV V A + P G+ DSK ++ ++R E+ + S ++ Sbjct: 23 VAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLLTPRRRAEIDPVLRSWVTAHALG 82 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS Q ID + A A A+E L V P + ++DG+ +P + VIKGD + Sbjct: 83 DASPQEIDDLGMTAALRLAAVRALEGLPVRPDAVILDGKHDYLGVPWKVRTVIKGDQSCI 142 Query: 145 SIAAASIIAKVTRDRLMR---IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++AAAS+IAKV RDR+M A + D+ F ++ GYP+ H+ ++E+GP+ HRL++ Sbjct: 143 AVAAASVIAKVHRDRMMAELGAASEDCADFDFGANAGYPSPVHRAALEERGPTAHHRLSW 202 >gi|300854482|ref|YP_003779466.1| putative ribonuclease HII [Clostridium ljungdahlii DSM 13528] gi|300434597|gb|ADK14364.1| predicted ribonuclease HII [Clostridium ljungdahlii DSM 13528] Length = 285 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 79/188 (42%), Positives = 111/188 (59%), Gaps = 9/188 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN-----NIPFGINDSKKISHKKREELYEKITSSAI 80 AG+DEVGRG LAGP+ A+IL+ N + GI DSKK++ K+R EL + I A+ Sbjct: 100 TAGVDEVGRGPLAGPIAAGAVILNLNYNEDRELILGIKDSKKLTPKRRCELAKVIKERAL 159 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 +I+ ++ IDK I + + AVE L++ AL DG ++ ++L VIKG Sbjct: 160 AYNIAVINNIEIDKRGISWCNNEVLKRAVEGLKLPVTMALSDGYAV-KNLSTNNEFVIKG 218 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D+ S SIAAASIIAKV RD LM Y +Y F+ + GY T H + IK+ G IHR+ Sbjct: 219 DTKSASIAAASIIAKVYRDSLMEEYSHLYTNYKFEQNSGYGTKDHIESIKKYGICKIHRV 278 Query: 200 TFRPLRNL 207 +F L+N+ Sbjct: 279 SF--LKNI 284 >gi|307720133|ref|YP_003891273.1| Ribonuclease H [Sulfurimonas autotrophica DSM 16294] gi|306978226|gb|ADN08261.1| Ribonuclease H [Sulfurimonas autotrophica DSM 16294] Length = 182 Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 71/186 (38%), Positives = 96/186 (51%), Gaps = 18/186 (9%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M + GIDE GRG LAG +V+A IL + G+NDSKK++ KKRE LYE I +A Sbjct: 1 MGVLCGIDEAGRGPLAGDLVMAGCILHVS--VDGLNDSKKLTAKKREALYELIVENASYH 58 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV------ 136 I S ID + I + + NL+ L DG Q + V Sbjct: 59 IVKFSAHDIDNNGISACLKKGLIDILNNLK--ADKYLFDGN--------QTYGVKNLATM 108 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 ++ D ++AASI+AKVT D + A KKYP+Y F+ H GY T H +IK+ G I Sbjct: 109 VQADRKIAEVSAASILAKVTHDVDILEAAKKYPEYQFEKHKGYGTKLHVAMIKKYGYCEI 168 Query: 197 HRLTFR 202 HR T++ Sbjct: 169 HRKTYK 174 >gi|118475400|ref|YP_891226.1| ribonuclease HII [Campylobacter fetus subsp. fetus 82-40] gi|118414626|gb|ABK83046.1| ribonuclease HII [Campylobacter fetus subsp. fetus 82-40] Length = 189 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 65/187 (34%), Positives = 97/187 (51%), Gaps = 16/187 (8%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELY---EKI 75 M + GIDE GRGALAG +VVA + P I G++DSKK++ +KREE++ EK+ Sbjct: 1 MAKICGIDEAGRGALAGELVVAGCVFKPKFKKEIIKLGLSDSKKLTEQKREEIFLNLEKM 60 Query: 76 TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF- 134 + ++ + I + + L+ I I DG D + Sbjct: 61 SDYLVVYFRNTIVDKIGLSDCLRRALNVIKMHFNECNFI-----YDGNC---DYGVKNIK 112 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 ++K DS ++AASIIAKV+RDR MR K YPD+G+ H GY H + +K+ G + Sbjct: 113 TIVKADSSVPQVSAASIIAKVSRDRQMRRFDKIYPDFGYAKHKGYGVKAHIEALKQHGSN 172 Query: 195 CIHRLTF 201 + RL+F Sbjct: 173 ELTRLSF 179 >gi|93006331|ref|YP_580768.1| ribonuclease H [Psychrobacter cryohalolentis K5] gi|122415238|sp|Q1QAL9|RNH2_PSYCK RecName: Full=Ribonuclease HII; Short=RNase HII gi|92394009|gb|ABE75284.1| RNase HII [Psychrobacter cryohalolentis K5] Length = 286 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 106/219 (48%), Gaps = 43/219 (19%) Query: 28 GIDEVGRGALAGPVVVAAIIL----------DP-NNIPFGI-NDSKKISHKKREELYEKI 75 G+DE GRG L G V VA+ IL P + P I DSK++S KKR+ LY + Sbjct: 65 GVDEAGRGPLLGSVNVASAILPRAWSGLIEGQPLKDTPLSILTDSKQLSEKKRDMLYPLV 124 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAI------------YH---AVENLQVIPRSAL 119 AI I+ ID+ NI +AT+ + YH +++ + L Sbjct: 125 QQHAIGYVIADIPAAVIDQVNILQATMLGMRLCTEVMLEVIAYHLNDMAQDVHQLHAEVL 184 Query: 120 IDGRSIPE-------------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 DG PE + CQA+ IKGD+ SIAAASI+AKV+RD+ M Sbjct: 185 FDGNRCPELNYARLVELGVEEKVDCQAW--IKGDARHTSIAAASILAKVSRDKTMYALDA 242 Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 ++P+YG H GYPT H + I+ G HR +F P+R Sbjct: 243 QHPEYGIAKHKGYPTRAHMEAIETYGVLAAHRRSFAPVR 281 >gi|152993838|ref|YP_001359559.1| ribonuclease HII [Sulfurovum sp. NBC37-1] gi|189043667|sp|A6QCJ3|RNH2_SULNB RecName: Full=Ribonuclease HII; Short=RNase HII gi|151425699|dbj|BAF73202.1| ribonuclease HII [Sulfurovum sp. NBC37-1] Length = 188 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 70/188 (37%), Positives = 99/188 (52%), Gaps = 26/188 (13%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAIISI 83 P+ GIDE GRG LAG +V+A ++L P G+ DSKK++ K+RE LY + +A I Sbjct: 7 PLCGIDEAGRGPLAGALVMAGVVLKK---PIDGLMDSKKLTEKRREALYTIVLENAEYHI 63 Query: 84 SSASHQYIDKHNIHKAT---LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV---- 136 S S + +D I K L +I +A++ + L DG S F V Sbjct: 64 VSFSAKEVDDLGISKCLQKGLQSIQNALDGCKY-----LFDGNS--------TFGVDNVS 110 Query: 137 --IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +K D ++AASI+AKVTRDR M + YP+YGF+ H GY T H + + + Sbjct: 111 TMVKADDKVPEVSAASILAKVTRDREMIKMAEIYPEYGFEKHKGYGTKAHIEALMKYDRC 170 Query: 195 CIHRLTFR 202 IHR +FR Sbjct: 171 EIHRRSFR 178 >gi|302554616|ref|ZP_07306958.1| ribonuclease HII [Streptomyces viridochromogenes DSM 40736] gi|302472234|gb|EFL35327.1| ribonuclease HII [Streptomyces viridochromogenes DSM 40736] Length = 233 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 70/177 (39%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84 VAG+DEVGRGA AGPV V A I P G+ DSK ++ K+R EL E + T ++ Sbjct: 23 VAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLLTIKRRTELAEVLRTWVTSFALG 82 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID+ + A A A++ L V P + ++DG+ P + VIKGD + Sbjct: 83 HASPEEIDELGMTAALRLAACRALDALPVRPDAVILDGKHDYLGAPWRVRTVIKGDQSCV 142 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++AAAS+IAKV RD++M + D+GF + GYP+ H+ + E+GP+ HRL++ Sbjct: 143 AVAAASVIAKVQRDKMMAELGIDHADFGFADNAGYPSPVHKAALAERGPTPYHRLSW 199 >gi|29828995|ref|NP_823629.1| ribonuclease HII [Streptomyces avermitilis MA-4680] gi|39932356|sp|Q82KF0|RNH2_STRAW RecName: Full=Ribonuclease HII; Short=RNase HII gi|29606100|dbj|BAC70164.1| putative ribonuclease HII [Streptomyces avermitilis MA-4680] Length = 233 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/186 (39%), Positives = 109/186 (58%), Gaps = 7/186 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR----EELYEKITSSAII 81 +AG+DEVGRGA AGPV V A I P G+ DSK ++ K+R EEL + +TS A+ Sbjct: 23 IAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLLTVKRRTVLAEELRKWVTSYAL- 81 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 AS + ID + A A A+E L V P + ++DG+ P + VIKGD Sbjct: 82 --GHASPEEIDALGMTAALRLAAVRALEALPVRPDAVILDGKHDYLGSPWKVRTVIKGDQ 139 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +++AAAS+IAKV RD++M ++ D+GF ++ GYP+ H+ + E+GP+ HRL++ Sbjct: 140 SCVAVAAASVIAKVQRDKMMAELGIEHADFGFAANAGYPSPVHKAALAERGPTPYHRLSW 199 Query: 202 RPLRNL 207 L L Sbjct: 200 AYLDAL 205 >gi|290956942|ref|YP_003488124.1| ribonuclease HII [Streptomyces scabiei 87.22] gi|260646468|emb|CBG69565.1| putative ribonuclease HII [Streptomyces scabiei 87.22] Length = 233 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/177 (38%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 VAG+DEVGRGA AGPV V A + P G+ DSK ++ K+RE L E++ ++ Sbjct: 23 VAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLLTIKRRESLSEELLKWVTSHALG 82 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID + A A A+E L V P + ++DG+ P + VIKGD + Sbjct: 83 HASPEEIDDLGMTAALRLAAVRALEALPVRPDAVILDGKHDYLGSPWRVRTVIKGDQSCV 142 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++AAAS+IAKV RD++M + D+GF ++ GYP+ H+ + E+GP+ HRL++ Sbjct: 143 AVAAASVIAKVQRDKMMAELGVDHADFGFAANAGYPSPVHKAALAERGPTPYHRLSW 199 >gi|284045128|ref|YP_003395468.1| ribonuclease H [Conexibacter woesei DSM 14684] gi|283949349|gb|ADB52093.1| Ribonuclease H [Conexibacter woesei DSM 14684] Length = 226 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/197 (39%), Positives = 108/197 (54%), Gaps = 9/197 (4%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-------FGINDSKKISHK 66 L A R+ VAG DE GRG LAGP+V AA++ D I +NDSK+ + + Sbjct: 22 LFAFDRDLGARFVAGADEAGRGCLAGPLVAAAVMFDYERITRSDLRALSALNDSKQQTAE 81 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +RE +Y I A +++ S ID+ +H L A+ A+ + L DG + Sbjct: 82 RREAIYPVILRVATRVAVISRCAPGIDRRGLHVTNLAALRDALARVACDGCICLSDGFRV 141 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 DL AVI GD+ S SIAAAS++AKVTRDR M A +P + F SHVGY T +H+ Sbjct: 142 A-DLGHDQRAVIGGDARSASIAAASVVAKVTRDRFMHRADVLHPGWEFASHVGYATPEHR 200 Query: 186 QVIKEKGPSCIHRLTFR 202 I+ G + +HRL+F+ Sbjct: 201 AAIERLGITPLHRLSFQ 217 >gi|228470569|ref|ZP_04055426.1| ribonuclease HII [Porphyromonas uenonis 60-3] gi|228307696|gb|EEK16672.1| ribonuclease HII [Porphyromonas uenonis 60-3] Length = 204 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/182 (39%), Positives = 105/182 (57%), Gaps = 4/182 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISIS 84 G DE GRGALAG + AA+I P+ + + DSKK++ K+REEL I A ++ Sbjct: 15 CGCDEAGRGALAGDLYAAAVIW-PDTLDHPHLRDSKKLTAKQREELRHFIEEHATAWAVG 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-PEDLPCQAFAVIKGDSIS 143 A+ Q I + NI A++ A+ A+E L P LIDG P + ++KGD Sbjct: 74 VATVQEIQQINILHASMLAMQRAIEALSCTPERLLIDGNYYDPRPDEVEYHTIVKGDDRY 133 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 L+IAAASI+AK RD M +YP YG++ + GYPTA+H++ I++ G +HR F+ Sbjct: 134 LAIAAASILAKTHRDEYMTQQALEYPHYGWEQNKGYPTAQHREGIRQHGSCPLHRQGFQL 193 Query: 204 LR 205 L+ Sbjct: 194 LQ 195 >gi|84498367|ref|ZP_00997164.1| ribonuclease HII [Janibacter sp. HTCC2649] gi|84381867|gb|EAP97750.1| ribonuclease HII [Janibacter sp. HTCC2649] Length = 261 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/212 (31%), Positives = 110/212 (51%), Gaps = 18/212 (8%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHK 66 +P +E ++ +AG+DEVGRGALAGPV V +++D + P G+ DSK + Sbjct: 9 KPSLRVERALQRDGYRLLAGMDEVGRGALAGPVSVGVVVIDETCRSAPQGVRDSKLLQPS 68 Query: 67 KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-- 123 RE + +I A ++ AS ID+ I A A A+ +L V+P ++DG Sbjct: 69 ARELMVPRIRRWAFAHAVGHASPAEIDEVGIIAALRLAGRRALASLDVVPDLVILDGNHD 128 Query: 124 --SIPEDLPCQAFA-----------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 + P+++ AF +IK D S+A+AS++AKV RDR+M + Sbjct: 129 WLTAPDEVGLLAFTSDDVHTPPVTTMIKADMKCSSVASASVLAKVERDRMMVDLAPDHAA 188 Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 Y ++ + GY +H ++E GP+ +HR ++R Sbjct: 189 YRWELNKGYAAPEHMDALREHGPTELHRRSWR 220 >gi|123969237|ref|YP_001010095.1| ribonuclease HII and HIII [Prochlorococcus marinus str. AS9601] gi|166226638|sp|A2BT77|RNH2_PROMS RecName: Full=Ribonuclease HII; Short=RNase HII gi|123199347|gb|ABM70988.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. AS9601] Length = 205 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/179 (37%), Positives = 100/179 (55%), Gaps = 5/179 (2%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS-HKKREELYEKITSSAIIS 82 GIDEVG+GA+ GPV AA++L N FG+ DSKK++ K++ L + + S+ Sbjct: 20 GIDEVGKGAIFGPVFAAAVVLTEKNKFILKQFGVTDSKKLTPKKRKLLLPKILLLSSDYG 79 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I +S + IDK I AT ++ A+ L+ P +IDG + ++ GDS Sbjct: 80 IGQSSAREIDKLGIRVATELSMIRALRKLKEKPSELIIDGPLLLRPWNGIQKNIVSGDSK 139 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +SIA+ASI+AKV+RD LM K Y Y + GY T +H +IK+ G + +HR +F Sbjct: 140 FISIASASIVAKVSRDNLMERLEKNYSGYLIFKNKGYGTREHLSLIKKNGITELHRKSF 198 >gi|294631838|ref|ZP_06710398.1| ribonuclease HII [Streptomyces sp. e14] gi|292835171|gb|EFF93520.1| ribonuclease HII [Streptomyces sp. e14] Length = 233 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 105/177 (59%), Gaps = 1/177 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRGA AGPV V A + P G+ DSK ++ K+R EL ++ ++ Sbjct: 23 IAGVDEVGRGAWAGPVTVCAAVTGLRRPPVGLTDSKLLTVKRRNELDAELRKWVTAYALG 82 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID + A A A+E L V P + ++DG+ P + VIKGD + Sbjct: 83 HASPEEIDDLGMTAALRLAASRALEALPVRPDAVILDGKHDYLGAPWKVRTVIKGDRSCV 142 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++AAAS+IAKV RD++M ++ D+GF ++ GYP+ H+ ++E+GP+ HRL++ Sbjct: 143 AVAAASVIAKVHRDKMMAELGSEHADFGFAANAGYPSPVHKAALEERGPTPYHRLSW 199 >gi|328885537|emb|CCA58776.1| Ribonuclease HII [Streptomyces venezuelae ATCC 10712] Length = 236 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/180 (38%), Positives = 100/180 (55%), Gaps = 4/180 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRGA AGPV V A + P G+ DSK I+ K+R L ++ ++ Sbjct: 23 VAGVDEVGRGAWAGPVTVCAAVTGLRRAPEGLTDSKLITPKRRTTLAAELEGWVTAYALG 82 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS Q ID+ + A A A+E L V P + ++DG+ P Q VIKGD + Sbjct: 83 DASPQEIDELGMTAALRLAAVRALEGLPVRPDAVILDGKHDYLGGPWQVRTVIKGDQSCI 142 Query: 145 SIAAASIIAKVTRDRLM---RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++AAAS+IAKV RD M + Y Y F ++ GYP+ H+ ++E GP+ HRL++ Sbjct: 143 AVAAASVIAKVRRDAFMAELETSAGDYAAYAFGANAGYPSPVHKAALEELGPTPHHRLSW 202 >gi|229140479|ref|ZP_04269034.1| Ribonuclease [Bacillus cereus BDRD-ST26] gi|228643040|gb|EEK99316.1| Ribonuclease [Bacillus cereus BDRD-ST26] Length = 147 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/146 (44%), Positives = 95/146 (65%), Gaps = 3/146 (2%) Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 +S KRE Y++I + AI I + S Q ID+ NI++AT A+ AV NL P+ LID Sbjct: 1 MSEAKRERFYDEIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLID 60 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 +P +P ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T Sbjct: 61 AMKLPTPIP--QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGT 118 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207 +H + I+ G HR +F P++++ Sbjct: 119 KQHLEAIEAHGILEEHRKSFAPIKDM 144 >gi|254424377|ref|ZP_05038095.1| ribonuclease HII [Synechococcus sp. PCC 7335] gi|196191866|gb|EDX86830.1| ribonuclease HII [Synechococcus sp. PCC 7335] Length = 199 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/179 (40%), Positives = 104/179 (58%), Gaps = 6/179 (3%) Query: 29 IDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELYEKITSSAIISI 83 +DEVGRGAL GPVV AA+I+ P++ + G+ DSK +S K+R +L +I S I Sbjct: 1 MDEVGRGALFGPVVAAAVIV-PDSAIASLVSAGVTDSKALSAKRRTQLAVEIRSLTAFGI 59 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 ++ ID+ NI +A+L A+ A+ L +P LIDG DLP + +++GD Sbjct: 60 GLSTVYEIDRINILQASLLAMRRAIFQLPWMPDKCLIDGNQRIFDLPIEQETIVRGDQSV 119 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 L+IAAASI+AKV RD L+ + YP Y S+ GY +A H+ I G HR +F+ Sbjct: 120 LAIAAASILAKVWRDDLVSRLDRHYPGYDLVSNKGYGSANHRAGIARYGICRQHRQSFK 178 >gi|329939992|ref|ZP_08289274.1| ribonuclease HII [Streptomyces griseoaurantiacus M045] gi|329300818|gb|EGG44714.1| ribonuclease HII [Streptomyces griseoaurantiacus M045] Length = 233 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84 +AG+DEVGRGA AGPV V A + P G+ DSK ++ K+R EL E + T ++ Sbjct: 23 IAGVDEVGRGAWAGPVTVCAAVTGLRRPPPGLTDSKLLTVKRRTELAETLRTWVTSYALG 82 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS Q ID+ + A A A+E L V P + ++DG+ P + VIKGD + Sbjct: 83 HASPQEIDERGMTAALRLAAVRALEALPVRPDAVILDGKHDYLGSPWKVRTVIKGDQSCV 142 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++AAAS++AKV RD++M + D+ F ++ GYP+ H+ ++ +GP+ HRL++ Sbjct: 143 AVAAASVLAKVQRDKMMAELGVDHADFAFAANAGYPSPVHRAALEVRGPTPYHRLSW 199 >gi|71065472|ref|YP_264199.1| ribonuclease HII [Psychrobacter arcticus 273-4] gi|97189215|sp|Q4FT93|RNH2_PSYA2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|71038457|gb|AAZ18765.1| probable ribonuclease HII [Psychrobacter arcticus 273-4] Length = 287 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 106/220 (48%), Gaps = 44/220 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILDP-----------NNIPFGI-NDSKKISHKKREELYEKI 75 G+DE GRG L G V VA+ IL + P I DSK++S KKR+ LY + Sbjct: 65 GVDEAGRGPLLGSVNVASAILPRAWSGLIEAQLLKDTPLSILTDSKQLSEKKRDLLYPLV 124 Query: 76 TSSAI-ISISSASHQYIDKHNIHKAT-----------LDAIYH----AVENLQVIPRSAL 119 AI I+ ID+ NI +AT L+ I H +++ + + L Sbjct: 125 QQYAIGYIIADIPAAVIDQINILQATMLGMRLCTEILLEVIAHHLNDMAQDIHQLQTAVL 184 Query: 120 IDGRSIPE--------------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165 DG PE + CQA+ +KGD+ SIAAASI+AKV+RD+ M Sbjct: 185 FDGNRCPELNYTSLAQLGIKESMIDCQAW--VKGDARHTSIAAASILAKVSRDKTMYALD 242 Query: 166 KKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 ++P+YG H GYPT H + I+ G HR +F P+R Sbjct: 243 TEHPEYGIAKHKGYPTRAHMEAIETYGVLSAHRRSFAPVR 282 >gi|328955473|ref|YP_004372806.1| RNase HII [Coriobacterium glomerans PW2] gi|328455797|gb|AEB06991.1| RNase HII [Coriobacterium glomerans PW2] Length = 262 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/194 (37%), Positives = 109/194 (56%), Gaps = 5/194 (2%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 R +E++ + + + V G+DEVGRG++AGP+ V A+ L P I +G+NDSK++S KR Sbjct: 62 RAMYEMQTRLGGRGV--VIGVDEVGRGSVAGPLTVCAVCLPPTPIIWGVNDSKRLSAAKR 119 Query: 69 EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 ++L +I A I I ID+ + A A+ AV + + P L+DG P Sbjct: 120 QKLAARIERIARAIGICHIPACDIDRCGMGAALRHAVRLAVADCGLEPDCVLMDGN--PL 177 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + V+ GD++ SIAAASI+AKVTRD LM YP Y + GY + +H + Sbjct: 178 GAVERERCVVHGDALVASIAAASIVAKVTRDDLMIELDSTYPGYHLAASKGYASPEHIEA 237 Query: 188 IKEKGPSCIHRLTF 201 I+E+G + HR +F Sbjct: 238 IRERGLTPEHRASF 251 >gi|308235361|ref|ZP_07666098.1| ribonuclease HII [Gardnerella vaginalis ATCC 14018] gi|311115100|ref|YP_003986321.1| ribonuclease HII [Gardnerella vaginalis ATCC 14019] gi|310946594|gb|ADP39298.1| ribonuclease HII [Gardnerella vaginalis ATCC 14019] Length = 227 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 110/220 (50%), Gaps = 28/220 (12%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-----PFGINDSKKIS 64 P F E + + V G+DEVGRG+LAGPV+V A + + I P G+ DSK I+ Sbjct: 5 PSFNFEQDLLKSGFDWVIGLDEVGRGSLAGPVMVGAALFGADKINSGYFPDGLADSKLIN 64 Query: 65 HKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR------- 116 KRE L E + + ++ S +++ ID+ I A A A+ ++Q R Sbjct: 65 AHKREGLLEPLENWCDAFAVGSCTNREIDEWGISYALGVAAIRAISDVQNSMRYKLENAH 124 Query: 117 -SALIDG-----------RSIPE-DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163 +A++DG P D P + ++K D S++AAS+IAKVTRD LM Sbjct: 125 IAAILDGPFNYIGKVSGTFDAPSIDFPVKVHTLVKADQKCASVSAASVIAKVTRDSLMTS 184 Query: 164 AHK--KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 KY Y + + GY + H+ I E GPS +HR+++ Sbjct: 185 LSDDPKYKIYDWAHNKGYGSKSHRAAILEYGPSDLHRISW 224 >gi|221194830|ref|ZP_03567887.1| putative ribonuclease HII [Atopobium rimae ATCC 49626] gi|221185734|gb|EEE18124.1| putative ribonuclease HII [Atopobium rimae ATCC 49626] Length = 263 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 70/177 (39%), Positives = 102/177 (57%), Gaps = 3/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + G+DEVGRG +AGP+ V A++L + G+NDSKK+S +RE + +I A+ I ++ Sbjct: 78 IVGVDEVGRGPVAGPLTVGAVVLSDTPLIDGLNDSKKLSAARRETIAARIAKVALAIGMA 137 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 ID+ + A A+ A+E V P LIDG P + + ++KGD+ Sbjct: 138 FIEPAEIDEIGMSAALRKAMEIAIEQTGVDPDCVLIDGN--PVHVHPREKTIVKGDAKIA 195 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASI+AKV+RD LM +YP Y F + GY +A H + I + G + IHR TF Sbjct: 196 SIAAASIVAKVSRDALMVDYDAQYPAYHFAQNKGYASADHIKAIADYGLTPIHRTTF 252 >gi|148652730|ref|YP_001279823.1| ribonuclease H [Psychrobacter sp. PRwf-1] gi|189043644|sp|A5WDY2|RNH2_PSYWF RecName: Full=Ribonuclease HII; Short=RNase HII gi|148571814|gb|ABQ93873.1| Ribonuclease H [Psychrobacter sp. PRwf-1] Length = 302 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 109/234 (46%), Gaps = 55/234 (23%) Query: 28 GIDEVGRGALAGPVVVAAIILDP-----------NNIPFGI-NDSKKISHKKREELYEKI 75 G+DEVGRG L G VVVAA IL + P I DSKK++ +KRE+L+E + Sbjct: 57 GVDEVGRGPLYGSVVVAAAILPKAWSGETEVGLLQDTPLAILTDSKKLTERKREKLFEPV 116 Query: 76 TSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQV----IPRSA------------ 118 A+ + ID+ NI +AT+ + A E L V + R A Sbjct: 117 KQHALAYLVVEVPAGVIDEINILQATILGMRVACEQLMVEITKVWRDASELPTAPSTPLG 176 Query: 119 ---LIDGRSIPE--------------DLPCQ---------AFAVIKGDSISLSIAAASII 152 LIDG +P+ D+ A A +KGD+ +IAAAS++ Sbjct: 177 FKLLIDGNKVPDLDEARLATHGICLADMTVTQPAGMVKFCAEAWVKGDARHNAIAAASVL 236 Query: 153 AKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 AKV RDR + +YP YG + H GYPT H + I G HR +F+P++ Sbjct: 237 AKVYRDRQLIADGARYPGYGLEGHKGYPTKAHVEAIARLGVLPEHRRSFKPVQQ 290 >gi|282862315|ref|ZP_06271377.1| Ribonuclease H [Streptomyces sp. ACTE] gi|282562654|gb|EFB68194.1| Ribonuclease H [Streptomyces sp. ACTE] Length = 236 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 72/186 (38%), Positives = 103/186 (55%), Gaps = 4/186 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRGA AGPV V A + P G+ DSK IS K+R EL + S + Sbjct: 23 VAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLISPKRRAELAPVLESWVTAFGLG 82 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID + A A A++ L V P + ++DG+ P + VIKGD + Sbjct: 83 HASPEEIDDLGMTAALRLAAVRALDALPVRPDAVILDGKHDYLGDPWKVRTVIKGDQSCI 142 Query: 145 SIAAASIIAKVTRDRLMR---IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++AAAS+IAKV RD +M +Y D+ F ++ GYP+ H+ ++E GP+ HRL++ Sbjct: 143 AVAAASVIAKVRRDTMMAELGADSDRYADFAFGANAGYPSPVHRAALEEWGPTPHHRLSW 202 Query: 202 RPLRNL 207 L L Sbjct: 203 SYLDAL 208 >gi|291436842|ref|ZP_06576232.1| ribonuclease HII [Streptomyces ghanaensis ATCC 14672] gi|291339737|gb|EFE66693.1| ribonuclease HII [Streptomyces ghanaensis ATCC 14672] Length = 233 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/177 (38%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRGA AGPV V A I P G+ DSK ++ K+R EL E + S ++ Sbjct: 23 IAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLLTLKRRTELAETLRSWVTSYALG 82 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID + A A A+E L V P + ++DG+ P + VIKGD + Sbjct: 83 HASPEEIDVLGMTAALRLAAVRALEALPVRPDAVILDGKHDYLGTPWKVRTVIKGDQSCV 142 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++AAAS+IAKV RD++M + D+GF + GYP+ H+ ++ +GP+ HRL++ Sbjct: 143 AVAAASVIAKVQRDKMMAELGVDHADFGFADNAGYPSPVHRAALEVRGPTPHHRLSW 199 >gi|239928517|ref|ZP_04685470.1| ribonuclease HII [Streptomyces ghanaensis ATCC 14672] Length = 236 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/177 (38%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRGA AGPV V A I P G+ DSK ++ K+R EL E + S ++ Sbjct: 26 IAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLLTLKRRTELAETLRSWVTSYALG 85 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID + A A A+E L V P + ++DG+ P + VIKGD + Sbjct: 86 HASPEEIDVLGMTAALRLAAVRALEALPVRPDAVILDGKHDYLGTPWKVRTVIKGDQSCV 145 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++AAAS+IAKV RD++M + D+GF + GYP+ H+ ++ +GP+ HRL++ Sbjct: 146 AVAAASVIAKVQRDKMMAELGVDHADFGFADNAGYPSPVHRAALEVRGPTPHHRLSW 202 >gi|325832929|ref|ZP_08165602.1| ribonuclease HII [Eggerthella sp. HGA1] gi|325485794|gb|EGC88258.1| ribonuclease HII [Eggerthella sp. HGA1] Length = 262 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 71/194 (36%), Positives = 103/194 (53%), Gaps = 14/194 (7%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 A+ E+ + G+DEVGRG LAGP+ V A++L G+NDSK++ + RE +I Sbjct: 65 ALAAERGDGVIVGLDEVGRGPLAGPLAVGAVVLPSEPFIEGLNDSKQVKPEARE----RI 120 Query: 76 TSSAIISISSASHQYIDKHNIHKATLDA--------IYHAVENLQVIPRSALIDGRSIPE 127 + + +Y++ +I + A +E + V P L+DG P Sbjct: 121 AVQVKAVAVAWTVEYVEASDIDACGMTASLALAFRRAIRRIEEVGVRPDVVLLDGN--PM 178 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L + V+KGD SIAAASI+AKV RD LM ++YP+YGFD+ GY +A H + Sbjct: 179 RLDEREVNVVKGDGKCASIAAASIVAKVERDALMCRYAEEYPEYGFDACKGYASAAHIEA 238 Query: 188 IKEKGPSCIHRLTF 201 IK G + IHR TF Sbjct: 239 IKRYGLTPIHRATF 252 >gi|302557990|ref|ZP_07310332.1| ribonuclease HII [Streptomyces griseoflavus Tu4000] gi|302475608|gb|EFL38701.1| ribonuclease HII [Streptomyces griseoflavus Tu4000] Length = 233 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 102/177 (57%), Gaps = 1/177 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRGA AGPV V A + P G+ DSK ++ K+R +L E + ++ Sbjct: 23 VAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLLTVKRRTQLAETLRGWVTSYALG 82 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID + A A A+E L V P + ++DG+ P + VIKGD + Sbjct: 83 HASPEEIDAMGMTAALRLAAGRALEALPVRPDAVILDGKHDYLGTPWRVRTVIKGDQSCV 142 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++AAAS+IAKV RD++M + D+GF + GYP+ H+ ++ +GP+ HRL++ Sbjct: 143 AVAAASVIAKVQRDKMMAELGIDHADFGFADNAGYPSPVHRAALEVRGPTPYHRLSW 199 >gi|313886392|ref|ZP_07820115.1| ribonuclease HII [Porphyromonas asaccharolytica PR426713P-I] gi|332300172|ref|YP_004442093.1| Ribonuclease H [Porphyromonas asaccharolytica DSM 20707] gi|312924168|gb|EFR34954.1| ribonuclease HII [Porphyromonas asaccharolytica PR426713P-I] gi|332177235|gb|AEE12925.1| Ribonuclease H [Porphyromonas asaccharolytica DSM 20707] Length = 204 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 70/182 (38%), Positives = 106/182 (58%), Gaps = 4/182 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-ISIS 84 G DE GRGALAG + AA++ P+ + + DSKK++ ++REEL I A ++ Sbjct: 15 CGCDEAGRGALAGDLYAAAVVW-PDTLDHPHLRDSKKLTARQREELRLFIEEHATAWAVG 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-PEDLPCQAFAVIKGDSIS 143 A+ Q I + NI A++ A+ A+E L P LIDG P + ++KGD Sbjct: 74 VATIQEIQQINILHASMLAMQRAIEALPCTPERLLIDGNYYDPRPDEVEYHTIVKGDDRY 133 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 L+IAAASI+AK RD M ++YP YG++ + GYPTA+H++ I++ G +HR F+ Sbjct: 134 LAIAAASILAKTHRDAYMTQQAQEYPHYGWEQNKGYPTAQHREGIRQYGSCPLHRQGFQL 193 Query: 204 LR 205 L+ Sbjct: 194 LQ 195 >gi|119963253|ref|YP_948173.1| ribonuclease HII [Arthrobacter aurescens TC1] gi|119950112|gb|ABM09023.1| putative ribonuclease HII [Arthrobacter aurescens TC1] Length = 256 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 72/214 (33%), Positives = 110/214 (51%), Gaps = 22/214 (10%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAIILDPNNIPFGINDSKKISHKK 67 P ++E + +AG+DEVGRGALAGPV V A + L+ + + + DSK + + Sbjct: 35 PTLDVERSFLSSGVRLLAGVDEVGRGALAGPVSVGIAVVNLENHGLLADVRDSKLLKPED 94 Query: 68 REELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGR 123 R+ L + A+ S + AS + ID+ I A A A + + P L+DG Sbjct: 95 RDRLEPLVREWAVASAVGHASSREIDQIGIIAALRLAGTRAWFEILAGGITPDVVLLDGS 154 Query: 124 -------------SIPEDLP-CQA--FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 P+ P C+A +K D LS+AAAS++AKV RDR+M H + Sbjct: 155 HNWLSPDVQASLFDTPDSGPWCEAPVHTRVKADMSCLSVAAASVLAKVARDRIMVDLHSE 214 Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 P YG++ + GY T+ H+ VI+ +GPS HR ++ Sbjct: 215 IPSYGWNVNKGYATSAHRDVIRLQGPSAHHRTSW 248 >gi|300869375|ref|ZP_07113962.1| Ribonuclease HII [Oscillatoria sp. PCC 6506] gi|300332602|emb|CBN59160.1| Ribonuclease HII [Oscillatoria sp. PCC 6506] Length = 178 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 68/177 (38%), Positives = 95/177 (53%), Gaps = 12/177 (6%) Query: 41 VVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHN 95 +V AA IL P + G+ DSK++S R L KI + A+ I AS + ID+ N Sbjct: 1 MVAAACILPPEALEELTALGVRDSKQLSPAARSRLAVKIQAMAVDCQIGVASVREIDRIN 60 Query: 96 IHKATLDAIYHAVENLQVIPRSALIDG-RSIPE------DLPCQAFAVIKGDSISLSIAA 148 I +A+L A+ A+ L +P LIDG + IP P +I+GD SL IAA Sbjct: 61 ILQASLLAMKRAILKLNTLPELCLIDGNQRIPNLVVPKAGYPYAQQTMIQGDRRSLVIAA 120 Query: 149 ASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 ASI+AKV RD L+ K+P+Y ++ GY T KH+ ++ G S HR +F P R Sbjct: 121 ASIVAKVWRDELIVRMAVKFPEYDLTNNKGYGTPKHRLGLERYGVSPFHRTSFSPCR 177 >gi|308234480|ref|ZP_07665217.1| Ribonuclease H [Atopobium vaginae DSM 15829] gi|328944073|ref|ZP_08241538.1| ribonuclease HII [Atopobium vaginae DSM 15829] gi|327492042|gb|EGF23816.1| ribonuclease HII [Atopobium vaginae DSM 15829] Length = 270 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 75/180 (41%), Positives = 102/180 (56%), Gaps = 9/180 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 + G+DEVGRG LAGP+ VAA+IL +G+NDSKK++ +RE L +I + A + I+ Sbjct: 89 IMGVDEVGRGPLAGPLAVAAVILPQEPHIWGLNDSKKLTSLERERLDTQIRAHARAVGIA 148 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI---PEDLPCQAFAVIKGDS 141 S + ID+ I + + A+ V P LIDG I P++ +IKGDS Sbjct: 149 FTSPEDIDRFGIVSCLRETMKCAILQTGVEPDCVLIDGNPIHAHPKEK-----TLIKGDS 203 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASI+AKV RDRLM+ YP Y F + GY + H IK G S +HR +F Sbjct: 204 RIASIAAASIVAKVARDRLMQDLDVCYPQYHFAENKGYGSKAHIDAIKTYGLSPVHRKSF 263 >gi|326403378|ref|YP_004283459.1| ribonuclease HII [Acidiphilium multivorum AIU301] gi|325050239|dbj|BAJ80577.1| ribonuclease HII [Acidiphilium multivorum AIU301] Length = 199 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 85/183 (46%), Positives = 108/183 (59%), Gaps = 5/183 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKIS-HKKREELYEKITSSAII 81 VAG+DEVGRG LAGPVV AA IL P I I+DSK++S ++ L I S A I Sbjct: 14 VAGVDEVGRGPLAGPVVAAAAILPADLPPEIAALIDDSKRLSPARREAALAALIESGAAI 73 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S ++AS I + NI +A+L A+ AV L V P L+DG+ P DLP V+ GD Sbjct: 74 SAAAASVAEIARLNILQASLLAMRRAVARLAVRPDHVLVDGQVAP-DLPMPCTPVVGGDG 132 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +SLSIAAASI AK+ RDR M ++YP YG+ + GY T H+ I G + HR F Sbjct: 133 LSLSIAAASIAAKLVRDRAMSRLDRRYPGYGWARNSGYATKTHRDAILGLGITPHHRRGF 192 Query: 202 RPL 204 PL Sbjct: 193 GPL 195 >gi|320008134|gb|ADW02984.1| Ribonuclease H [Streptomyces flavogriseus ATCC 33331] Length = 236 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/182 (38%), Positives = 103/182 (56%), Gaps = 8/182 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL---YEKITSSAIIS 82 VAG+DEVGRGA AGPV V A + P G+ DSK ++ K+R EL EK ++ Sbjct: 23 VAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLLTPKRRAELAPTLEKWVTA--YG 80 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + AS Q ID + A A A++ L V P + ++DG+ P VIKGD Sbjct: 81 LGHASPQEIDDVGMTAALRLAATRALDMLPVRPDAVILDGKHDYLGPPWNVRTVIKGDQS 140 Query: 143 SLSIAAASIIAKVTRDRLMR---IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 +++AAAS+IAKV RD +M +Y D+ F ++ GYP+ H+ ++E+GP+ HRL Sbjct: 141 CIAVAAASVIAKVHRDTMMAELGAESGQYADFAFGANAGYPSPVHRAALEERGPTPHHRL 200 Query: 200 TF 201 ++ Sbjct: 201 SW 202 >gi|213857938|ref|ZP_03384909.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 131 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/131 (44%), Positives = 76/131 (58%), Gaps = 2/131 (1%) Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 +S K+R LY++I A+ S+ A ID+ NI AT+ A+ AV L + P LID Sbjct: 1 MSEKRRLSLYDEIKEKALSWSLGRAEAHEIDELNILHATMLAMQRAVAGLHIAPEYVLID 60 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 G PE LP + AV+KGDS I+AASI+AKVTRD M +P YGF H GYPT Sbjct: 61 GNRCPE-LPVPSMAVVKGDSRVAEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPT 119 Query: 182 AKHQQVIKEKG 192 A H + + + G Sbjct: 120 AFHLEKLAQYG 130 >gi|257791157|ref|YP_003181763.1| Ribonuclease H [Eggerthella lenta DSM 2243] gi|257475054|gb|ACV55374.1| Ribonuclease H [Eggerthella lenta DSM 2243] Length = 262 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/194 (36%), Positives = 102/194 (52%), Gaps = 14/194 (7%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 A+ E+ + G+DEVGRG LAGP+ V A++L G+NDSK++ + RE +I Sbjct: 65 ALAAERGDGVIVGLDEVGRGPLAGPLAVGAVVLPSEPFIEGLNDSKQVKPEARE----RI 120 Query: 76 TSSAIISISSASHQYIDKHNIHKATLDA--------IYHAVENLQVIPRSALIDGRSIPE 127 + + +Y++ +I + A +E V P L+DG P Sbjct: 121 AVQVKAVAVAWTVEYVEASDIDACGMTASLALAFRRAIRRIEEAGVRPDVVLLDGN--PM 178 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L + V+KGD SIAAASI+AKV RD LM ++YP+YGFD+ GY +A H + Sbjct: 179 RLDEREVNVVKGDGKCASIAAASIVAKVERDALMCRYAEEYPEYGFDACKGYASAAHIEA 238 Query: 188 IKEKGPSCIHRLTF 201 IK G + IHR TF Sbjct: 239 IKRYGLTPIHRATF 252 >gi|332978396|gb|EGK15114.1| ribonuclease HII [Psychrobacter sp. 1501(2011)] Length = 308 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/236 (33%), Positives = 109/236 (46%), Gaps = 59/236 (25%) Query: 28 GIDEVGRGALAGPVVVAAIIL----------DP-NNIPFGI-NDSKKISHKKREELYEKI 75 GIDEVGRG L G VVV+ IL +P + P I DSKK++ KRE L+E I Sbjct: 66 GIDEVGRGPLYGSVVVSGAILPCQWSAEIEQNPLQDTPLAILTDSKKLTEAKRERLFEPI 125 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQV--------------------- 113 A+ I ID+ NI +ATL + A E + + Sbjct: 126 KQQALAYMIVEIPASVIDEVNILQATLMGMRLACEQIMIEMVQALQSNLDKSLEVEGFLD 185 Query: 114 --------IPRSALIDGRSIPEDLPCQ----------------AFAVIKGDSISLSIAAA 149 I + LIDG +P DL Q A A +KGD+ +IAAA Sbjct: 186 IHSSSQNHIAFNLLIDGNKVP-DLDSQLLQHYNIGPELKHSVNAEAWVKGDARHSAIAAA 244 Query: 150 SIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 S++AKV+RDR + +P YG + H GYPT H + I++ G HR +F+P++ Sbjct: 245 SVLAKVSRDRQLIKDGAAHPGYGLEGHKGYPTKAHIEAIQKLGVLPQHRRSFKPVQ 300 >gi|33864055|ref|NP_895615.1| ribonuclease HII [Prochlorococcus marinus str. MIT 9313] gi|39932296|sp|Q7V4Z5|RNH2_PROMM RecName: Full=Ribonuclease HII; Short=RNase HII gi|33635639|emb|CAE21963.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9313] Length = 218 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/186 (34%), Positives = 101/186 (54%), Gaps = 15/186 (8%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII 81 +AG+DEVGRG GPV A++L + G+ DSK ++ ++R L I +A Sbjct: 26 IAGVDEVGRGCWFGPVFAGAVVLTEVAAVELLAEGLTDSKALTVRRRARLVPLIEDAATA 85 Query: 82 -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF-----A 135 ++ AS + ID I AT A+ A++ L L+DG LP + + Sbjct: 86 WALGQASAREIDALGIRSATELAMLRALQRLPTPLELVLVDG-----VLPLRLWMGPQRT 140 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V++GDS +IAAAS++AK RD L++ ++ YG + HVGY TA H++ + + GP+ Sbjct: 141 VVRGDSKCAAIAAASVLAKQARDGLIKRLASRFYGYGLERHVGYGTAIHRRALLDLGPTE 200 Query: 196 IHRLTF 201 +HR +F Sbjct: 201 LHRRSF 206 >gi|124024062|ref|YP_001018369.1| ribonuclease HII [Prochlorococcus marinus str. MIT 9303] gi|189043640|sp|A2CC94|RNH2_PROM3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|123964348|gb|ABM79104.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9303] Length = 200 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 101/186 (54%), Gaps = 15/186 (8%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAI- 80 +AG+DEVGRG GPV A++L + G+ DSK ++ ++R L I +A Sbjct: 8 IAGVDEVGRGCWFGPVFAGAVVLTEVAAVELLAEGLTDSKALTVRRRARLVPLIEDAATA 67 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF-----A 135 ++ AS + ID I AT ++ A++ L L+DG LP + + Sbjct: 68 WALGQASAREIDALGIRSATELSMLRALQRLPTPLELVLVDG-----VLPLRLWMGPQRT 122 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V++GDS +IAAAS++AK RD L++ ++ YG + HVGY TA H++ + + GP+ Sbjct: 123 VVRGDSKCAAIAAASVLAKQARDGLIKRLASRFYGYGLERHVGYGTAIHRRALLDLGPTA 182 Query: 196 IHRLTF 201 +HR +F Sbjct: 183 LHRRSF 188 >gi|313673941|ref|YP_004052052.1| ribonuclease h [Calditerrivibrio nitroreducens DSM 19672] gi|312940697|gb|ADR19889.1| Ribonuclease H [Calditerrivibrio nitroreducens DSM 19672] Length = 178 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/174 (37%), Positives = 93/174 (53%), Gaps = 2/174 (1%) Query: 29 IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSAS 87 +DEVGRG AGPVV AI+L I DSKK++ KR L E I + + I Sbjct: 1 MDEVGRGCFAGPVVAVAILLKDGFYDKRIIDSKKLAENKRVVLAELIKENMLDCGIGVVC 60 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 IDK NI +AT A+ A+ ++V +ID + +L A IK + + +A Sbjct: 61 AGLIDKLNILRATKQAMQVAISRIRVGYDRVVIDAVKL-NNLNTPHEAHIKAEDKFMEVA 119 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 AASI+AKV RD LM+ H +P Y + + GY T H + I++ G + +HR TF Sbjct: 120 AASIVAKVYRDNLMKDMHYLFPQYNWYKNKGYGTPDHIEAIRKFGITPLHRKTF 173 >gi|305432558|ref|ZP_07401719.1| ribonuclease HII [Campylobacter coli JV20] gi|304444269|gb|EFM36921.1| ribonuclease HII [Campylobacter coli JV20] Length = 202 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/178 (36%), Positives = 100/178 (56%), Gaps = 7/178 (3%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87 GIDE GRGALAGP+++AA L + G+ DSKK+S K+REELYE I ++ I + S Sbjct: 31 GIDEAGRGALAGPMMMAACKLHKD--LEGLCDSKKLSEKRREELYEIIIKNSNYLILAFS 88 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV-IKGDSISLSI 146 + ID+ + A L ++ + L DG + +L IK D+ + Sbjct: 89 SEKIDEIGLS-ACLKMGLTLIKKHFKTENNFLYDGNT---NLGISGIKTQIKADANIKQV 144 Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +AASI+AKV++DR+M K +P Y F+ + Y T H+++I + G +HR +F+ L Sbjct: 145 SAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKELIAKFGICKLHRKSFKLL 202 >gi|222823127|ref|YP_002574700.1| ribonuclease HII [Campylobacter lari RM2100] gi|222538348|gb|ACM63449.1| ribonuclease HII [Campylobacter lari RM2100] Length = 183 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/183 (38%), Positives = 98/183 (53%), Gaps = 16/183 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + G+DE GRGALAG + + A L NI G+ DSKK+S KKREELYE+I S++ I Sbjct: 1 MALVGVDEAGRGALAGDMHIGACKL-LKNID-GLADSKKLSAKKREELYEQILSNSNFLI 58 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPR-----SALIDGRSIPEDLPCQAFAVIK 138 + S ID + + A L++I + L DG L + ++K Sbjct: 59 LAFSPLQIDTLGLSQCLQLA-------LKIIKKHFSQDEILYDGNLNYGILDIKT--MVK 109 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 D ++AASI+AKV+RD+ MR K Y +Y FD H GY T H + IK G S +HR Sbjct: 110 ADMKVQEVSAASILAKVSRDQKMRYFSKIYSNYDFDKHKGYGTKAHIEKIKAFGYSPLHR 169 Query: 199 LTF 201 +F Sbjct: 170 KSF 172 >gi|227495319|ref|ZP_03925635.1| possible ribonuclease H [Actinomyces coleocanis DSM 15436] gi|226831189|gb|EEH63572.1| possible ribonuclease H [Actinomyces coleocanis DSM 15436] Length = 228 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/201 (34%), Positives = 103/201 (51%), Gaps = 26/201 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 V GIDEVGRGALAGPV V A + P G+ DSK +S K+RE A +++ Sbjct: 28 VIGIDEVGRGALAGPVGVGACVAGLGEPPLGLTDSKALSLKQREHFVSLAQEWAYPWAVT 87 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR----SIPEDLPC------ 131 AS++ +D+ I A A A+EN++ V+ L+DG + P+DL Sbjct: 88 YASNREVDELGIITALRLAGIRALENIKEAGVVADVVLLDGSHDWLTPPQDLFSFDTAPL 147 Query: 132 ----QAFAV------IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 QA +K D+ +AAAS++AKV RD+LM P YG+ + GY + Sbjct: 148 VERFQAVGAPPVVMKVKADASCSVVAAASVMAKVARDKLME--ELPDPGYGWAKNKGYGS 205 Query: 182 AKHQQVIKEKGPSCIHRLTFR 202 A H++ I+ G S HR +++ Sbjct: 206 AAHREAIRSLGVSQWHRTSWK 226 >gi|317182569|dbj|BAJ60353.1| ribonuclease HII [Helicobacter pylori F57] Length = 204 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/195 (34%), Positives = 95/195 (48%), Gaps = 25/195 (12%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L +KI + I Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEIKF 63 Query: 83 -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA------ 135 + S ID + AI +ENL P + IDG + AF Sbjct: 64 WVVKKSANEIDNLGLGACLKLAIQEILENLSASPHAIKIDGNT--------AFGLNKRYS 115 Query: 136 ----VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD IA AS++AK +DR MR H + +YG+D + GY T +H + + + Sbjct: 116 NIETIIKGDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKL 175 Query: 192 GPSCIHRLTFRPLRN 206 G + HR +F L+N Sbjct: 176 GATPFHRHSF-TLKN 189 >gi|189911146|ref|YP_001962701.1| ribonuclease H [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775822|gb|ABZ94123.1| Ribonuclease H [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 246 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 98/207 (47%), Gaps = 37/207 (17%) Query: 29 IDEVGRGALAGPVVVAAII--------LDPNNIPFGINDSKKISHKKREELYEKITS-SA 79 DE GRG LAGPV V + + I + DSKKI KR EL +I +A Sbjct: 27 FDEAGRGTLAGPVSVGCVSFSSQTLEKIQSGTILKNLRDSKKIPEPKRFELRTEILQYAA 86 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR--------SALIDGRSIPEDL-- 129 +S S ++ID+ NI++A I A L V PR + + G E L Sbjct: 87 YWHVSFVSAKFIDRFNINQAIFYGISRA---LPVNPRQVTGHLHKTGIPLGTQTKETLAP 143 Query: 130 --------------PCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174 P + + I KGD + SI+AASI+AK RD M KYP YGF Sbjct: 144 FLFVDGNYKLKIHKPIEGYLSIPKGDDLVPSISAASILAKTYRDEYMEKMDAKYPGYGFA 203 Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLTF 201 H GY T +H++ +++ G S IHRL+F Sbjct: 204 KHKGYGTEEHREALRKLGISPIHRLSF 230 >gi|302542045|ref|ZP_07294387.1| ribonuclease HII [Streptomyces hygroscopicus ATCC 53653] gi|302459663|gb|EFL22756.1| ribonuclease HII [Streptomyces himastatinicus ATCC 53653] Length = 233 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/183 (37%), Positives = 103/183 (56%), Gaps = 1/183 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 V G+DEVGRGA AGPV V A + P G+ DSK +S K+R EL ++ S ++ Sbjct: 23 VVGVDEVGRGAWAGPVTVCAAVTGLRRPPTGLTDSKLLSPKRRTELAHELESWVTAHALG 82 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 +S + ID + A A A+E L V P + ++DG+ P + VIKGD + Sbjct: 83 HSSPEEIDDLGMTAALRLAATRALEGLPVRPDAVILDGKHDYLGAPWRVRTVIKGDQSCV 142 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 ++AAAS+IAKV RD LM + D+ F + GYP+ H+ ++++GP+ HRL++ L Sbjct: 143 AVAAASVIAKVRRDALMAELGGAHADFRFGDNAGYPSPVHRAALRDQGPTPHHRLSWAYL 202 Query: 205 RNL 207 L Sbjct: 203 DGL 205 >gi|207092749|ref|ZP_03240536.1| ribonuclease HII [Helicobacter pylori HPKX_438_AG0C1] Length = 204 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 95/188 (50%), Gaps = 11/188 (5%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG LAG + VA + D + G+ DSKK+S KKR L +KI + + Sbjct: 4 GIDEAGRGCLAGSLFVAGVACDEKTALEFLKMGLKDSKKLSQKKRFFLEDKIKTHGEVKF 63 Query: 83 -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138 + S + ID + AI +EN + IDG + + + P +IK Sbjct: 64 FVVKKSAEAIDSLGLGACLRLAIEEILENGCSLANEIKIDGNTAFGLNKRYP-HIQTIIK 122 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD IA AS++AK +DR MR H + +YG+D + GY T +H + I + G + HR Sbjct: 123 GDETIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHR 182 Query: 199 LTFRPLRN 206 +F L+N Sbjct: 183 HSF-TLKN 189 >gi|255321778|ref|ZP_05362933.1| ribonuclease HII [Campylobacter showae RM3277] gi|255301258|gb|EET80520.1| ribonuclease HII [Campylobacter showae RM3277] Length = 191 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 7/178 (3%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + GIDE GRGALAGP+ VAA +L +I G+NDSKK++ K+REEL ++I ++ I+ Sbjct: 8 QICGIDEAGRGALAGPMAVAACVL-KRDIA-GLNDSKKLTEKRREELLKEIIKNSEFLIA 65 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S++ ID+ + + A+ + L DG + + ++ D Sbjct: 66 YFSNEQIDELGLSECLRRALR--LFKAHFTDCELLYDGNA---NYGTGIKTMVGADGKVA 120 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 ++AASI+AKV+RD LM+ + YG+ +H GY T H I G S + R +FR Sbjct: 121 QVSAASILAKVSRDALMQAWDGVHSGYGYATHKGYGTKAHLDAIARLGDSPLQRRSFR 178 >gi|223038412|ref|ZP_03608706.1| ribonuclease HII [Campylobacter rectus RM3267] gi|222880269|gb|EEF15356.1| ribonuclease HII [Campylobacter rectus RM3267] Length = 189 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 98/185 (52%), Gaps = 7/185 (3%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77 ++ K+ + GIDE GRGALAGP+ VAA +L I G NDSKK++ K+REEL+ +I Sbjct: 1 MKNKSNAQICGIDEAGRGALAGPLAVAACVL-KREIA-GPNDSKKLTAKRREELFGQIAG 58 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 ++ I+ S++ ID+ + + A+ + L DG + + ++ Sbjct: 59 NSEFLIAYFSNEQIDELGLSECLRRALRLFKSHFAGCE--PLYDGNA---NYGTGVKTMV 113 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 D ++AASI+AKV+RD LMR + YG+ +H GY T H I G S + Sbjct: 114 GADGKVAQVSAASILAKVSRDVLMRAWDGVHGGYGYAAHKGYGTKAHLDAIARLGDSPLQ 173 Query: 198 RLTFR 202 R +FR Sbjct: 174 RRSFR 178 >gi|4514315|dbj|BAA75362.1| RNaseH [Bacillus halodurans] Length = 192 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/136 (41%), Positives = 83/136 (61%), Gaps = 10/136 (7%) Query: 15 EAMVREKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKR 68 E + EK++W VAG+DEVGRG LAGPVV AA+IL P ++ G+ DSKK++ + R Sbjct: 60 EMLAYEKDLWAKGYEHVAGLDEVGRGPLAGPVVTAAVIL-PKDVQLPGLTDSKKLAKETR 118 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E Y++I A+ S++ ID+ NI++AT + A++ L V P + L+D ++P Sbjct: 119 ESFYDRIKEVALAWSVAIVPVTVIDEVNIYQATKQGMMSAIDQLSVNPDALLLDAMNLPL 178 Query: 128 DLPCQAFAVIKGDSIS 143 LP Q+ IKGD S Sbjct: 179 SLPQQSL--IKGDQKS 192 >gi|50955107|ref|YP_062395.1| ribonuclease HII [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951589|gb|AAT89290.1| ribonuclease HII [Leifsonia xyli subsp. xyli str. CTCB07] Length = 226 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 78/207 (37%), Positives = 104/207 (50%), Gaps = 12/207 (5%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKIS 64 P P E + + + + +DEVGRGALAGPV V +++D IP G+ DSK +S Sbjct: 3 PVTPSLRFEKALYRQGVTSIVAVDEVGRGALAGPVAVGMVVIDTAVKRIPLGLRDSKLLS 62 Query: 65 HKKREELYEKITSSAII-SISSASHQYIDKHNIHK--ATLDAIYHAVENLQVIP--RSAL 119 RE L ++ ++ AS +D+H I + A AV Q P SAL Sbjct: 63 EPAREALEPACRRWSLFHAVGLASADEVDRHGIMRCLGLAGARAFAVLEEQGAPVHDSAL 122 Query: 120 I-DGR----SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174 I DG ++ P + +K D S+AAAS+IAKV RDRLM P YG+ Sbjct: 123 ILDGNYDYLTLALTRPARVVTRVKADRDCASVAAASVIAKVHRDRLMIEHDADDPGYGWA 182 Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLTF 201 S+ GY T H I E GPS IHRLT+ Sbjct: 183 SNKGYSTPGHFAAIAELGPSAIHRLTW 209 >gi|126697031|ref|YP_001091917.1| ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9301] gi|166226635|sp|A3PEZ1|RNH2_PROM0 RecName: Full=Ribonuclease HII; Short=RNase HII gi|126544074|gb|ABO18316.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9301] Length = 205 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 67/185 (36%), Positives = 100/185 (54%), Gaps = 5/185 (2%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS-HKKREELYEKITSSAIIS 82 GIDEVGRG++ GPV A + L N G+ DSKK++ K++ L + + S+ Sbjct: 20 GIDEVGRGSIFGPVFSAVVELTEKNKFTLKKLGVTDSKKLTPKKRKLLLPKILLLSSDYG 79 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I +S + IDK I AT ++ A++ L+ P L+DG + + GDS Sbjct: 80 IGQSSAREIDKLGIRVATELSMIRALKKLKKKPSELLVDGPLLLRPWKGTQKNIESGDSK 139 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +SIA+ASI+AKV+RD LM +KY Y + GY T +H +IK+ G + +HR +F Sbjct: 140 FISIASASIVAKVSRDNLMVRLERKYSGYLIFKNKGYGTREHLSLIKKNGITKLHRKSFL 199 Query: 203 PLRNL 207 NL Sbjct: 200 KKSNL 204 >gi|256832223|ref|YP_003160950.1| Ribonuclease H [Jonesia denitrificans DSM 20603] gi|256685754|gb|ACV08647.1| Ribonuclease H [Jonesia denitrificans DSM 20603] Length = 303 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 101/203 (49%), Gaps = 26/203 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITSSAIIS- 82 VAG+DEVGRGALAGPV V ++DP P G+ DSK++SH+ R L I A+ S Sbjct: 87 VAGVDEVGRGALAGPVAVGVCVVDPTTQLPPVGLTDSKELSHEARALLVPMIQGWAVASA 146 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAV-ENLQVIP--RSALIDGRSIPEDLPCQAF----- 134 + A+ + ID+ I A A A+ E +Q + + L+DG P Q Sbjct: 147 VGLATPEEIDECGIVGALRLAGQRALGEIMQRLGPVDTVLLDGSHNWLSEPVQDLFDAVT 206 Query: 135 ---------------AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 +K D S+A ASI+AK RD +MR +P YG+ ++ GY Sbjct: 207 SDQQTIDGYEEPRVVTRVKADLACASVAGASILAKEHRDAIMRELDHDFPHYGWVTNKGY 266 Query: 180 PTAKHQQVIKEKGPSCIHRLTFR 202 ++ H + +GP+ HR+++R Sbjct: 267 ASSGHTYALTTRGPTPHHRMSWR 289 >gi|57505767|ref|ZP_00371693.1| ribonuclease HII [Campylobacter upsaliensis RM3195] gi|57016040|gb|EAL52828.1| ribonuclease HII [Campylobacter upsaliensis RM3195] Length = 174 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 67/178 (37%), Positives = 105/178 (58%), Gaps = 8/178 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + GIDE GRGALAGP+ +AA +L P N + DSKK++ KKR++LY +I S++ I Sbjct: 2 LVGIDEAGRGALAGPLFIAACELLKPLN---ELKDSKKLNEKKRKKLYGEIISNSNYLIL 58 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + S+ ID + K + + +L + + DG + L + +IK DS+ Sbjct: 59 AFSNAQIDTLGLSKCLQKGL--EIIHLHFEKQRKIFDGNTNYGVLGIEN--LIKADSLIA 114 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 ++AASI+AKV+RD++M+ KYP YGF+ H Y T H++ I + G +HRL+F+ Sbjct: 115 EVSAASILAKVSRDKVMQFLALKYPQYGFEIHKAYGTKAHRESIAKYGACKLHRLSFK 172 >gi|297156716|gb|ADI06428.1| ribonuclease HII [Streptomyces bingchenggensis BCW-1] Length = 243 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 71/183 (38%), Positives = 101/183 (55%), Gaps = 1/183 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS 84 V GIDEVGRGA AGPV V A + P G+ DSK +S KKR L +++ T ++ Sbjct: 33 VVGIDEVGRGAWAGPVTVCAAVTGLRRPPAGLTDSKLLSPKKRTALAQELETWVTSYALG 92 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID + A A A++ L V P + ++DG+ P + VIKGD + Sbjct: 93 HASPEEIDALGMTAALRLAATRALDGLPVRPDAVILDGKHDYLGKPWKVRTVIKGDQSCV 152 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 ++AAAS+IAKV RD LM + D+ F + GYP+ H+ + E GP+ HRL++ L Sbjct: 153 AVAAASVIAKVRRDTLMAELGAAHADFRFGDNAGYPSPAHRAALTELGPTPYHRLSWAYL 212 Query: 205 RNL 207 L Sbjct: 213 DGL 215 >gi|317488112|ref|ZP_07946688.1| ribonuclease HII [Eggerthella sp. 1_3_56FAA] gi|316912784|gb|EFV34317.1| ribonuclease HII [Eggerthella sp. 1_3_56FAA] Length = 262 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 69/184 (37%), Positives = 99/184 (53%), Gaps = 14/184 (7%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + G+DEVGRG LAGP+ V A++L G+NDSK++ + E+ E+I + Sbjct: 75 IVGLDEVGRGPLAGPLAVGAVVLPAEPFIEGLNDSKQV----KPEVRERIAVQVKAVAVA 130 Query: 86 ASHQYIDKHNIHKATLDA--------IYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 + +Y++ +I + A +E V P L+DG P L + V+ Sbjct: 131 WTVEYVEASDIDACGMTASLALAFRRAIRRIEEAGVRPDVVLLDGN--PMRLDEREVNVV 188 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD SIAAASI+AKV RD LM ++YP+YGFD+ GY +A H + IK G + IH Sbjct: 189 KGDGKCASIAAASIVAKVERDALMCRYAEEYPEYGFDACKGYASAAHIEAIKRYGLTPIH 248 Query: 198 RLTF 201 R TF Sbjct: 249 RATF 252 >gi|315604543|ref|ZP_07879606.1| ribonuclease HII [Actinomyces sp. oral taxon 180 str. F0310] gi|315313555|gb|EFU61609.1| ribonuclease HII [Actinomyces sp. oral taxon 180 str. F0310] Length = 231 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 82/199 (41%), Positives = 107/199 (53%), Gaps = 24/199 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREELYEKITSSAIIS- 82 VAG+DEVGRGALAGPV V ++ D +P G+ DSK +S ++RE L E I S + S Sbjct: 19 VAGMDEVGRGALAGPVAVGVALVGADAPAVPGGLTDSKALSPRRREALVEPIHSWVLASC 78 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQV---IPRSALIDGR----SIPEDL------ 129 ++ AS ID+ I A A A+ + P L+DG SIP+DL Sbjct: 79 VAYASAAEIDRWGIVCALRLAGRRALAGVVAKGHAPGGVLLDGSHDWLSIPDDLCAADGP 138 Query: 130 ---PCQAFAV---IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 C A V +K D+ +AAAS++AKV RDRLMR A P YG+ S+ GY +A Sbjct: 139 DYPDCGALPVHTQVKADASCAVVAAASVLAKVARDRLMREAED--PGYGWASNKGYGSAA 196 Query: 184 HQQVIKEKGPSCIHRLTFR 202 H Q I G S HR T+R Sbjct: 197 HAQAIARLGVSDFHRRTWR 215 >gi|139439754|ref|ZP_01773145.1| Hypothetical protein COLAER_02176 [Collinsella aerofaciens ATCC 25986] gi|133774904|gb|EBA38724.1| Hypothetical protein COLAER_02176 [Collinsella aerofaciens ATCC 25986] Length = 262 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 95/172 (55%), Gaps = 9/172 (5%) Query: 34 RGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYID 92 RG++AGP+ V A+ L +GINDSKK++ +RE L KI A I + + ID Sbjct: 85 RGSVAGPLTVCAVCLPMEPRVWGINDSKKLTPARRELLSVKIAEVATAIGFCHIAPKDID 144 Query: 93 KHNIHKATLDAIYHAVENLQVIPRSALIDGR---SIPEDLPCQAFAVIKGDSISLSIAAA 149 + + +A A+ AV + + P L+DG ++P + V+KGD+ IAAA Sbjct: 145 EMGMARAIRTAVAGAVADTGLEPDCVLMDGNPLGAVPNERD-----VVKGDAKIACIAAA 199 Query: 150 SIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SI+AKVTRD +M +YP+Y GY + +H + I++ G +HR++F Sbjct: 200 SIMAKVTRDEMMVEYDAEYPEYHLAESKGYASPEHIEAIRKHGLCPLHRVSF 251 >gi|119025252|ref|YP_909097.1| ribonuclease HII [Bifidobacterium adolescentis ATCC 15703] gi|118764836|dbj|BAF39015.1| ribonuclease [Bifidobacterium adolescentis ATCC 15703] Length = 264 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 113/229 (49%), Gaps = 37/229 (16%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--------DPNNIPFGINDSK 61 P ++E + + G DEVGRG+LAGPV+V A + P +P G+ DSK Sbjct: 33 PTLDMERAIAASGYDVIVGFDEVGRGSLAGPVMVGAAAIRTCDLSGPSPLAVPDGVADSK 92 Query: 62 KISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQV---IPRS 117 ++ +RE ++E++ S A ++ SAS+ ID I A A A+ + I + Sbjct: 93 MLTEHRREAIFEELKSWCASWAVGSASNTEIDDWGISYALGVAALRALSEAETRLGIDGN 152 Query: 118 ALIDGRSI--------PED---------------LPCQAFAVIKGDSISLSIAAASIIAK 154 L+DGR + P D +P + +KGD ++A A++IAK Sbjct: 153 GLLDGRPVKVGAILDGPNDYITKALNTFDAPDVPVPAEVSTKVKGDRYCATVATAAVIAK 212 Query: 155 VTRDRLM--RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 VTRDRLM A +Y Y + + GY +A H+ I E GPS +HRL++ Sbjct: 213 VTRDRLMVELGAQPQYEPYEWAHNKGYGSAAHRDAIAEFGPSDLHRLSW 261 >gi|57504609|ref|ZP_00370721.1| ribonuclease HII [Campylobacter coli RM2228] gi|57019504|gb|EAL56198.1| ribonuclease HII [Campylobacter coli RM2228] Length = 191 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 65/178 (36%), Positives = 99/178 (55%), Gaps = 7/178 (3%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87 GIDE GRGALAGP+++AA L + G+ DSKK+S K+REELYE I + I + S Sbjct: 20 GIDEAGRGALAGPMMMAACKLHKD--LEGLCDSKKLSEKRREELYEIILLHSDYLILAFS 77 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV-IKGDSISLSI 146 + ID+ + A L ++ + L DG + +L IK D+ + Sbjct: 78 SEKIDEIGLS-ACLKMGLTLIKKHFKTENNFLYDGNT---NLGISGIKTQIKADANIKQV 133 Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +AASI+AKV++DR+M K +P Y F+ + Y T H+++I + G +HR +F+ L Sbjct: 134 SAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKELIAKFGICKLHRKSFKLL 191 >gi|78047020|ref|YP_363195.1| ribonuclease HII [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035450|emb|CAJ23095.1| ribonuclease HII [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 129 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 47/99 (47%), Positives = 63/99 (63%) Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 AVE + + A IDG +P+ LPC A A+I GD++ +I AASI+AKVTRDRLM H Sbjct: 4 AVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALDRAIMAASIVAKVTRDRLMHELHT 63 Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 ++P+Y FD H GY T H ++ GP HR +F P+R Sbjct: 64 RHPEYRFDQHKGYSTPVHLAALQTHGPCPQHRRSFAPVR 102 >gi|294623977|ref|ZP_06702767.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601724|gb|EFF45671.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 132 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 47/99 (47%), Positives = 63/99 (63%) Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 AVE + + A IDG +P+ LPC A A+I GD++ +I AASI+AKVTRDRLM H Sbjct: 4 AVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALDRAIMAASIVAKVTRDRLMHELHT 63 Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 ++P+Y FD H GY T H ++ GP HR +F P+R Sbjct: 64 RHPEYRFDQHKGYSTPVHLAALQTHGPCPQHRRSFAPVR 102 >gi|302537359|ref|ZP_07289701.1| ribonuclease HII [Streptomyces sp. C] gi|302446254|gb|EFL18070.1| ribonuclease HII [Streptomyces sp. C] Length = 236 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 70/188 (37%), Positives = 106/188 (56%), Gaps = 8/188 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRGA AGPV V A I P G+ DSK ++ K+R+ L E + ++ Sbjct: 23 IAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLLTPKRRDALLEVLEDWVTAHALG 82 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID+ + A A A+E L + P + ++DG+ P + VIKGD + Sbjct: 83 HASPEEIDELGMTAALRLAAVRALEALPMRPDAVILDGKHDYLGPPWRVRTVIKGDQSCI 142 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYP-----DYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 ++AAAS+IAKV RDR+M A P D+ F ++ GYP+ H+ ++ +GP+ HRL Sbjct: 143 AVAAASVIAKVRRDRMM--AGLGEPGDGVADFAFAANAGYPSPVHRAALEVRGPTAYHRL 200 Query: 200 TFRPLRNL 207 ++ L L Sbjct: 201 SWSYLDAL 208 >gi|154486645|ref|ZP_02028052.1| hypothetical protein BIFADO_00464 [Bifidobacterium adolescentis L2-32] gi|154084508|gb|EDN83553.1| hypothetical protein BIFADO_00464 [Bifidobacterium adolescentis L2-32] Length = 238 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 114/230 (49%), Gaps = 39/230 (16%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--------DPNNIPFGINDSK 61 P ++E + + G DEVGRG+LAGPV+V A + P +P G+ DSK Sbjct: 7 PTLDMERAIAASGYDVIVGFDEVGRGSLAGPVMVGAAAIRTCDLAGSSPLQVPDGVADSK 66 Query: 62 KISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKA----TLDAIYHAVENLQVIPR 116 ++ +RE ++E++ S A ++ SAS+ ID I A L A+ A E L I Sbjct: 67 MLTEHRREAIFEELKSWCASWAVGSASNTEIDDWGISYALGIAALRALGQAEEKLG-IDG 125 Query: 117 SALIDGRSI--------PED---------------LPCQAFAVIKGDSISLSIAAASIIA 153 ++DG+ + P D +P + +KGD ++A A++IA Sbjct: 126 DGMLDGKPVKVGAILDGPNDYITKALNTFDAPDVPVPAEVSTKVKGDRYCATVATAAVIA 185 Query: 154 KVTRDRLM--RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 KVTRDRLM A +Y Y + + GY +A H+ I E GPS +HRL++ Sbjct: 186 KVTRDRLMVELGAQPQYEPYEWAHNKGYGSAAHRDAIAEFGPSDLHRLSW 235 >gi|261337969|ref|ZP_05965853.1| ribonuclease HII [Bifidobacterium gallicum DSM 20093] gi|270277466|gb|EFA23320.1| ribonuclease HII [Bifidobacterium gallicum DSM 20093] Length = 243 Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 119/236 (50%), Gaps = 43/236 (18%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII-----LDPNNIPFGINDSKKIS 64 P + E + ++ + G DEVGRGALAGPV+V A L ++P + DSK ++ Sbjct: 6 PTLDREQELADQGFDLIVGFDEVGRGALAGPVMVGAAAIWAADLPQLHVPDHVADSKMLT 65 Query: 65 HKKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ----------- 112 ++RE +YE + + SA ++ AS+Q ID I A A A+ L+ Sbjct: 66 ERRREAIYEDLEAWSAAWAVGQASNQEIDDWGISHALGIAALRALAQLEHHLGIGIASNQ 125 Query: 113 -----------VIPR-SALIDG------RSIPE----DLPCQAFAV--IKGDSISLSIAA 148 PR A++DG +++ D+P A V +KGD ++A+ Sbjct: 126 TSISSEATTTLRTPRIGAILDGPHDYITKALGTFEAPDVPINAHVVTQVKGDQHCATVAS 185 Query: 149 ASIIAKVTRDRLM-RIAHK-KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 A++IAKVTRD LM +A + +Y YG+ S+ GY H+Q I + G +HRL+++ Sbjct: 186 AAVIAKVTRDHLMIELAERPEYAPYGWASNKGYGAKAHRQAIVDHGLCDLHRLSWK 241 >gi|1296968|emb|CAA65177.1| rnhB [Porphyromonas gingivalis] Length = 168 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 59/147 (40%), Positives = 81/147 (55%), Gaps = 1/147 (0%) Query: 57 INDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP 115 +NDSK++S K+R L I S I I S Q ID+ NI +A+ A++ A+E L P Sbjct: 11 LNDSKQLSEKQRYTLRPVIESETIGWGIGIVSPQEIDEINILRASFLAMHRAIEQLPFRP 70 Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 LIDG ++ GD+ SIAAASI+AK RD M +K +P YG++ Sbjct: 71 ERLLIDGNRFDPFEQIPHHCIVGGDARYRSIAAASILAKTYRDDSMLRLNKDFPMYGWER 130 Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFR 202 + GYP+ H+ I+ G S HRLTFR Sbjct: 131 NKGYPSPAHKSAIRRFGVSPHHRLTFR 157 >gi|217032077|ref|ZP_03437577.1| hypothetical protein HPB128_16g37 [Helicobacter pylori B128] gi|298735652|ref|YP_003728177.1| ribonuclease HII [Helicobacter pylori B8] gi|216946225|gb|EEC24833.1| hypothetical protein HPB128_16g37 [Helicobacter pylori B128] gi|298354841|emb|CBI65713.1| ribonuclease HII [Helicobacter pylori B8] Length = 204 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 65/190 (34%), Positives = 96/190 (50%), Gaps = 11/190 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 V GIDE GRG LAG + VA + D + G+ DSKK+S KKR L +KI + + Sbjct: 2 VLGIDEAGRGCLAGSLFVAGVACDEKTALEFLKMGLKDSKKLSPKKRFFLEDKIKTHGEV 61 Query: 82 S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136 + S ID + +I +EN + IDG + + + P + Sbjct: 62 GFFVVKKSANEIDSLGLGACLRLSIEEILENGCSLANEIKIDGNTAFGLNKRYP-HIQTI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK ++DR MR H + +YG+D + GY T +H + I + G + Sbjct: 121 IKGDEKIAQIAMASVLAKASKDREMRQLHALFKEYGWDKNCGYGTKQHIEAIIKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRRSF-TLKN 189 >gi|145636492|ref|ZP_01792160.1| ribonuclease HII [Haemophilus influenzae PittHH] gi|145270317|gb|EDK10252.1| ribonuclease HII [Haemophilus influenzae PittHH] Length = 111 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 48/104 (46%), Positives = 66/104 (63%) Query: 103 AIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162 A+ AV++L++ P L+DG IP+DL A AV+KGDSI I+AASI+AKV RD+ M Sbjct: 3 AMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKGDSIVAEISAASILAKVARDQEME 62 Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 K+YP+Y F H GYPT H + + E G HR +F P++ Sbjct: 63 ELDKQYPEYAFAKHKGYPTKLHLEKLAEFGTLPQHRRSFAPVKK 106 >gi|261840038|gb|ACX99803.1| ribonuclease HII [Helicobacter pylori 52] Length = 204 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 11/190 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L +KI + + Sbjct: 2 ILGIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEV 61 Query: 82 S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136 + S ID+ + AI +EN + + IDG + + + P + Sbjct: 62 EFWVVKKSANEIDRLGLGACLKLAIQEILENNRSLANGIKIDGNTAFGLNKRYP-NIQTI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK +DR MR H + +YG+D + GY T +H + + + G + Sbjct: 121 IKGDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRHSF-TLKN 189 >gi|317011523|gb|ADU85270.1| ribonuclease HII [Helicobacter pylori SouthAfrica7] Length = 204 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 96/188 (51%), Gaps = 11/188 (5%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG LAG + VA ++ D + G+ DSKK+S KKR L +KI S + Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCDEKTALEFLKMGLKDSKKLSPKKRFFLEDKIKSHDEVGF 63 Query: 83 -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138 + S + ID + AI +EN + + IDG + + + P +IK Sbjct: 64 FVVKKSAESIDSLGLGACLKLAIQEILENGRSLANEIKIDGNTAFGLDKRYP-HIQTIIK 122 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD IA AS++AK +DR M H + +YG+D + GY T +H + I + G + HR Sbjct: 123 GDETIAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHR 182 Query: 199 LTFRPLRN 206 +F L+N Sbjct: 183 HSF-TLKN 189 >gi|78779978|ref|YP_398090.1| RNase HII [Prochlorococcus marinus str. MIT 9312] gi|97189158|sp|Q318P1|RNH2_PROM9 RecName: Full=Ribonuclease HII; Short=RNase HII gi|78713477|gb|ABB50654.1| RNase HII [Prochlorococcus marinus str. MIT 9312] Length = 205 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/179 (36%), Positives = 97/179 (54%), Gaps = 5/179 (2%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS-HKKREELYEKITSSAIIS 82 GIDEVGRGA+ GPV A ++L N FG+ DSKK++ K++ L + + S+ Sbjct: 20 GIDEVGRGAVFGPVFSAVVVLTEKNKFILKQFGVKDSKKLTPKKRKLLLPKILLLSSDYG 79 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I +S + ID I AT ++ A++ L+ P ++DG + ++ GDS Sbjct: 80 IGQSSAREIDMLGIRVATELSMIRALKKLKEKPSEIIVDGPLLLRPWKGIQKNIVSGDSK 139 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +IA+ASI+AKV RD LM KKY Y + GY T +H IK+ G + +HR +F Sbjct: 140 ITAIASASIVAKVARDNLMERLEKKYSGYLIFKNKGYGTREHFSNIKKNGITNLHRKSF 198 >gi|208435220|ref|YP_002266886.1| ribonuclease HII [Helicobacter pylori G27] gi|238056779|sp|B5Z8X1|RNH2_HELPG RecName: Full=Ribonuclease HII; Short=RNase HII gi|208433149|gb|ACI28020.1| ribonuclease HII [Helicobacter pylori G27] Length = 204 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 95/190 (50%), Gaps = 11/190 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG LAG + VA + D + G+ DSKK+S KKR L +KI + + Sbjct: 2 ILGIDEAGRGCLAGSLFVAGVACDDQTALEFLKMGLKDSKKLSPKKRFFLEDKIKTHGEV 61 Query: 82 S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136 + S ID + A+ +EN + IDG + + + P + Sbjct: 62 GFFVVKKSANEIDSLGLGACLKLAVQEILENGCSLANEIKIDGNTAFGLNKRYP-NIQTI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK +DR MR H + +YG+D + GY T +H + I + G + Sbjct: 121 IKGDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAISKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRHSF-TLKN 189 >gi|56713262|gb|AAW23358.1| ribonuclease HIIA [Leishmania major] Length = 296 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 78/263 (29%), Positives = 112/263 (42%), Gaps = 87/263 (33%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITS------ 77 V G+DE GRG +AGPV VAA + + P + + DSKK+ R E E + + Sbjct: 18 VIGVDEAGRGCMAGPVGVAATLYRISATPVRYAVMDSKKMKESDRAETLEAMCAELSDAG 77 Query: 78 -----------------------------SAIISISSASHQYIDKHNIHKATLDAI---- 104 +A++ +S I++ NI ATL+ + Sbjct: 78 VEGFVGTTVRDGACCLVRYQRRKPLQAVAAALVDVS-----VINERNILNATLEGMSAVC 132 Query: 105 ------YHAVENLQVI-PRSA--LIDGRSIP---------EDLPCQAF------------ 134 Y+AV L + P + LIDG +P + + QA Sbjct: 133 EAVVRSYNAVSGLGTLTPLTCAILIDGNRVPWTFLSGEERQRVCVQAVRKVEARKRIGVE 192 Query: 135 ----------AVIKGDSISLSIAAASIIAKVTRDRL-MRIAHKKYPDYGFDSHVGYPTAK 183 V+KGD+ LSIAAASI+AKV RD + + H +P YGFD H GY TA Sbjct: 193 YPALDGFSCTTVVKGDATLLSIAAASIVAKVARDAYAVSVMHPAFPQYGFDHHKGYCTAA 252 Query: 184 HQQVIKEKGPSCIHRLTFRPLRN 206 H+ + GPS HRL + P++ Sbjct: 253 HKAELARWGPSRFHRLDYAPVKG 275 >gi|254527238|ref|ZP_05139290.1| ribonuclease HII [Prochlorococcus marinus str. MIT 9202] gi|221538662|gb|EEE41115.1| ribonuclease HII [Prochlorococcus marinus str. MIT 9202] Length = 205 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/186 (38%), Positives = 101/186 (54%), Gaps = 5/186 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-SAII 81 GIDEVGRGA+ GPV A ++L N G+ DSKK++ KKR+ L KI S+ Sbjct: 19 VGIDEVGRGAIFGPVFSAVVVLTEKNKFLLKQLGVKDSKKLTPKKRKFLVPKILLLSSDY 78 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I +S + ID I AT ++ A++ L+ P ++DG + ++ GDS Sbjct: 79 GIGQSSVKEIDNLGIRVATELSMIRALKKLKEKPSELIVDGPLLLRPWSGTQKNIVSGDS 138 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +SIA+ASIIAKV+RD LM KKY Y + GY T +H +IK G + +HR +F Sbjct: 139 KFISIASASIIAKVSRDNLMMKLEKKYSGYLIFKNKGYGTREHLSLIKRNGVTNLHRKSF 198 Query: 202 RPLRNL 207 NL Sbjct: 199 LKKLNL 204 >gi|182413915|ref|YP_001818981.1| ribonuclease H [Opitutus terrae PB90-1] gi|177841129|gb|ACB75381.1| Ribonuclease H [Opitutus terrae PB90-1] Length = 261 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 114/242 (47%), Gaps = 45/242 (18%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--------PFGI 57 +P+R + + + + + G+DE GRGALAGPVV A+++ + + Sbjct: 1 MPKRRQLRAFDLKQIEGLSGLIGVDEAGRGALAGPVVAGAVMVTKEFLEGRWAVTKAGRV 60 Query: 58 NDSKKISHKKREEL---YEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQ 112 NDSK+++ REEL +E++ + I + A +++ NI AT A+ A+E Sbjct: 61 NDSKQLTPAMREELWAEFEELVNQGQIHATFGVADVAEVEQLNILGATKLAMQRALEA-- 118 Query: 113 VIPRSA---------------------------LIDGRSIPEDLPCQAFAVIKGDSISLS 145 + P SA L+DG ++ P ++I GD+ SL Sbjct: 119 IYPPSAFQQKTEPDLFTSAEELAAYQPTVSCRILLDGLAM-RKFPYPHHSIISGDARSLC 177 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 IA ASI+AKV RDRLM K+P YGF H GY T +H + + G HR F LR Sbjct: 178 IAMASIVAKVQRDRLMCELELKHPGYGFAQHKGYGTPEHCEALLRLGRCAQHRDLF--LR 235 Query: 206 NL 207 L Sbjct: 236 KL 237 >gi|297520198|ref|ZP_06938584.1| ribonuclease HII [Escherichia coli OP50] Length = 128 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/115 (46%), Positives = 69/115 (60%), Gaps = 1/115 (0%) Query: 91 IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAAS 150 ID+ NI AT+ A+ AV L + P LIDG P+ LP + AV+KGDS I+AAS Sbjct: 8 IDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSRVPEISAAS 66 Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P++ Sbjct: 67 ILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGPVK 121 >gi|29469217|gb|AAO65330.1| putative ribonuclease HII [Streptomyces murayamaensis] Length = 236 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 72/186 (38%), Positives = 103/186 (55%), Gaps = 4/186 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRGA AGPV V A I P G+ DSK IS K+R EL ++ S ++ Sbjct: 23 IAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLISPKRRLELAGELESWVTAYALG 82 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 +S Q ID+ + A A A++ L V P + ++DG+ P VIKGD + Sbjct: 83 HSSPQEIDELGMTAALRLAAVRALDGLPVKPEAVILDGKHDYLGDPWWVRTVIKGDQSCV 142 Query: 145 SIAAASIIAKVTRDRLMR---IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++AAAS+IAKV RD +M A + +GF + GYP+ H+ + E GP+ HRL++ Sbjct: 143 AVAAASVIAKVRRDAMMAELGGAAGECAAFGFADNAGYPSPTHKTALVEWGPTPYHRLSW 202 Query: 202 RPLRNL 207 L L Sbjct: 203 SYLDAL 208 >gi|317014714|gb|ADU82150.1| ribonuclease HII [Helicobacter pylori Gambia94/24] Length = 201 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 66/191 (34%), Positives = 97/191 (50%), Gaps = 11/191 (5%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG LAG + VA ++ + + G+ DSKK+S KKR L +KI + + Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCNEKTALEFLKMGLKDSKKLSPKKRFFLEDKIKTHDEVGF 63 Query: 83 -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138 + S IDK + AI VEN + IDG + + + P +IK Sbjct: 64 FVVKKSANEIDKLGLGACLKLAIQEIVENGCSLADEIKIDGNTAFGLNKRYP-HIQTIIK 122 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD IA AS++AK +DR M H + +YG+D + GY T +H + I + G + HR Sbjct: 123 GDEKVAQIAMASVLAKAAKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHR 182 Query: 199 LTFRPLRNLSV 209 +F L+N S+ Sbjct: 183 HSF-TLKNRSL 192 >gi|308183433|ref|YP_003927560.1| ribonuclease HII [Helicobacter pylori PeCan4] gi|308065618|gb|ADO07510.1| ribonuclease HII [Helicobacter pylori PeCan4] Length = 204 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 95/190 (50%), Gaps = 11/190 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 V GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L KI + + Sbjct: 2 VLGIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLENKIKTHGEV 61 Query: 82 S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136 + S + ID + AI +EN + + IDG + + + P + Sbjct: 62 GFFVVKKSAEAIDNLGLGACLKLAIQEILENNRSLANQIKIDGNTAFGLNKRYP-NIQTI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK +DR M H + +YG+D + GY T +H + I + G + Sbjct: 121 IKGDEKVAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRRSF-TLKN 189 >gi|145640735|ref|ZP_01796318.1| ribonuclease HII [Haemophilus influenzae R3021] gi|145274661|gb|EDK14524.1| ribonuclease HII [Haemophilus influenzae 22.4-21] Length = 111 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 65/104 (62%) Query: 103 AIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162 A+ AV++L++ P L+DG IP+DL AV+KGDS+ I+AASI+AKV RD+ M Sbjct: 3 AMTRAVKSLKIQPHFVLVDGNKIPKDLAIPVQAVVKGDSLVAEISAASILAKVARDQEME 62 Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 K+YP+Y F H GYPT H + + E G HR +F P++ Sbjct: 63 ELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRRSFAPVKK 106 >gi|15612308|ref|NP_223961.1| ribonuclease HII [Helicobacter pylori J99] gi|7227933|sp|Q9ZJR1|RNH2_HELPJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|4155855|gb|AAD06828.1| RIBONUCLEASE HII [Helicobacter pylori J99] Length = 209 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 95/188 (50%), Gaps = 11/188 (5%) Query: 28 GIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG LAG + VA ++ + + G+ DSKK+S KKR L +KI + + Sbjct: 9 GIDEAGRGCLAGSLFVAGVVCNEKIALEFLKMGLKDSKKLSPKKRFFLEDKIKTHGEVGF 68 Query: 83 -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138 + S ID + AI VEN + IDG + + + P +IK Sbjct: 69 FVVKKSANEIDHLGLGACLKLAIEEIVENGCSLANEIKIDGNTAFGLNKRYP-NIQTIIK 127 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD IA AS++AK ++DR M H + +YG+D + GY T +H + I + G + HR Sbjct: 128 GDETIAQIAMASVLAKASKDREMLELHALFKEYGWDKNCGYGTKQHIEAINKLGATPFHR 187 Query: 199 LTFRPLRN 206 +F L+N Sbjct: 188 HSF-TLKN 194 >gi|146303444|ref|YP_001190760.1| ribonuclease HII [Metallosphaera sedula DSM 5348] gi|145701694|gb|ABP94836.1| RNase HII [Metallosphaera sedula DSM 5348] Length = 208 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 66/191 (34%), Positives = 104/191 (54%), Gaps = 24/191 (12%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-SAIIS 82 GIDE GRG L GP+VV + L+ +I G+ DSKK++ KKREEL++ I S S ++ Sbjct: 4 GIDEAGRGCLIGPMVVVGVALNERSIVALKQSGVKDSKKLTRKKREELFDLILSESEGVA 63 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVI-PRSALID--GRSIP-----EDLPCQAF 134 ++ A + ID +N++ T + ++ L + P +D G+ I EDL + Sbjct: 64 VAKALPEEIDNNNLNSLTYTKVIEIIDALSWLNPEVVTVDKVGKEIEVIRAIEDLGFKPN 123 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH--QQVIK--- 189 V K D + + ++ASI+AKV RDRL+ K++ D+G GYP+ + Q V+ Sbjct: 124 VVHKADELFVEASSASIVAKVIRDRLIESLKKEFGDFG----SGYPSDRKTVQWVLDLVS 179 Query: 190 --EKGPSCIHR 198 E+ P+ I R Sbjct: 180 RGEEPPNIIRR 190 >gi|310286901|ref|YP_003938159.1| Ribonuclease HII [Bifidobacterium bifidum S17] gi|311063802|ref|YP_003970527.1| ribonuclease HII RnhB [Bifidobacterium bifidum PRL2010] gi|309250837|gb|ADO52585.1| Ribonuclease HII [Bifidobacterium bifidum S17] gi|310866121|gb|ADP35490.1| RnhB Ribonuclease HII [Bifidobacterium bifidum PRL2010] Length = 233 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 111/229 (48%), Gaps = 38/229 (16%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII-----LDPNNIPFGINDSKK 62 E P ++E + + V G DEVGRGALAGPV+V A L +P G+ DSK Sbjct: 5 EHPTLDMERQLAAQGCDVVIGCDEVGRGALAGPVMVGAAAMWSRDLAAAQVPAGVADSKL 64 Query: 63 ISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 ++ +RE + +++ S A ++ AS+ ID+ I A A A+ +++ R +D Sbjct: 65 LTEHRREGIVDELRSWCAAYAVGQASNAEIDEWGISHALGIAALRALNDVE---RQLGMD 121 Query: 122 G-----RSI------PED---------------LPCQAFAVIKGDSISLSIAAASIIAKV 155 G R + P D +P Q +KGD +++ A++IAKV Sbjct: 122 GPAGSGRRVDVILDGPNDYITKTMNTFDAPALPIPVQVSCKVKGDRHCATVSCAAVIAKV 181 Query: 156 TRDRLM---RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 TRD LM + +Y YG+ + GY +A H+ I G + +HR+T+ Sbjct: 182 TRDHLMVDIAQGNPRYAPYGWAHNKGYGSAAHRDAIARLGVTPLHRVTW 230 >gi|261838642|gb|ACX98408.1| ribonuclease HII [Helicobacter pylori 51] Length = 204 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 65/195 (33%), Positives = 95/195 (48%), Gaps = 25/195 (12%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG LAG + VA ++ + + G+ DSKK+S KKR L +KI + + Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCNEKTALEFLSMGLKDSKKLSPKKRFFLEDKIKTHGEVKF 63 Query: 83 -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA------ 135 + S ID + AI +EN + + IDG + AF Sbjct: 64 WVVKKSANEIDSLGLGVCLKLAIQEILENGRSLANKIKIDGNT--------AFGLNKRYS 115 Query: 136 ----VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD IA AS+IAK +DR MR H + +YG+D + GY T +H + + + Sbjct: 116 NIETIIKGDEKIAQIAMASVIAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKL 175 Query: 192 GPSCIHRLTFRPLRN 206 G + HR +F L+N Sbjct: 176 GATPFHRHSF-TLKN 189 >gi|308185075|ref|YP_003929208.1| ribonuclease HII [Helicobacter pylori SJM180] gi|308060995|gb|ADO02891.1| ribonuclease HII [Helicobacter pylori SJM180] Length = 204 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 95/190 (50%), Gaps = 11/190 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L +KI + + Sbjct: 2 ILGIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEV 61 Query: 82 S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136 + S + ID + AI +EN + IDG + + + P + Sbjct: 62 GFFVVKKSAEAIDSLGLGACLKLAIQEILENGCSLANEIKIDGNTAFGLDKRYP-NIQTI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK +DR M H + +YG+D + GY T +H + I + G + Sbjct: 121 IKGDETIAQIAMASVLAKTAKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRHSF-TLKN 189 >gi|317181045|dbj|BAJ58831.1| ribonuclease HII [Helicobacter pylori F32] Length = 204 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 65/195 (33%), Positives = 94/195 (48%), Gaps = 25/195 (12%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L +KI + I Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEIKF 63 Query: 83 -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA------ 135 + S ID + AI +EN + + IDG + AF Sbjct: 64 WVVKKSANEIDNLGLGACLKLAIQEILENDRSLANQIKIDGNT--------AFGLNKRYS 115 Query: 136 ----VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD IA AS++AK +DR MR H + +YG+D + GY T +H + + + Sbjct: 116 NIQTIIKGDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKL 175 Query: 192 GPSCIHRLTFRPLRN 206 G + HR +F L+N Sbjct: 176 GATPFHRHSF-TLKN 189 >gi|308064100|gb|ADO05987.1| ribonuclease HII [Helicobacter pylori Sat464] Length = 204 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 95/190 (50%), Gaps = 11/190 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L +KI + I Sbjct: 2 ILGIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEI 61 Query: 82 S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136 + S ID + A+ +EN + IDG + + + P + Sbjct: 62 KFWVVKKSANEIDNLGLGACLKLAVQEILENDHSLANQIKIDGNTAFGLNKRYP-NIQTI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK +DR MR H + +YG+D + GY T +H + + + G + Sbjct: 121 IKGDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRHSF-TLKN 189 >gi|308177303|ref|YP_003916709.1| ribonuclease HII [Arthrobacter arilaitensis Re117] gi|307744766|emb|CBT75738.1| ribonuclease HII [Arthrobacter arilaitensis Re117] Length = 241 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 63/197 (31%), Positives = 97/197 (49%), Gaps = 21/197 (10%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREELYEKITSSAI-IS 82 +A +DEVGRGALAGP+ V ++D + + DSK +S R L + + A+ Sbjct: 26 IAAVDEVGRGALAGPITVGMTVIDIQQVTEFPALRDSKLLSPDTRMALVDPVRQWAVGYG 85 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR----SIPE----------- 127 + AS ID+ + A A A+ + P +AL+DG + PE Sbjct: 86 VGHASATEIDELGVTGALRLAGSRAMVQCAIQPEAALLDGSYDWLTAPEPDLFDILADDR 145 Query: 128 ---DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 L ++KGD +IA ASI+AKV RD +M ++PD+G++ + GY TA H Sbjct: 146 EPVGLRIPVATIVKGDMTCQAIAGASILAKVERDVIMVGLATEHPDFGWEINKGYATAAH 205 Query: 185 QQVIKEKGPSCIHRLTF 201 + I +GP HR ++ Sbjct: 206 RAAIVAQGPCDYHRKSW 222 >gi|224282458|ref|ZP_03645780.1| ribonuclease HII [Bifidobacterium bifidum NCIMB 41171] gi|313139607|ref|ZP_07801800.1| ribonuclease HII [Bifidobacterium bifidum NCIMB 41171] gi|313132117|gb|EFR49734.1| ribonuclease HII [Bifidobacterium bifidum NCIMB 41171] Length = 233 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 111/229 (48%), Gaps = 38/229 (16%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII-----LDPNNIPFGINDSKK 62 E P ++E + + V G DEVGRGALAGPV+V A L +P G+ DSK Sbjct: 5 EHPTLDMERQLAAQGCDVVIGCDEVGRGALAGPVMVGAAAMWSRDLAAAQVPAGVADSKL 64 Query: 63 ISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 ++ +RE + +++ S A ++ AS+ ID+ I A A A+ +++ R +D Sbjct: 65 LTEHRREGIVDELRSWCAAYAVGQASNAEIDEWGISHALGIAALRALNDVE---RQLGMD 121 Query: 122 G-----RSI------PED---------------LPCQAFAVIKGDSISLSIAAASIIAKV 155 G R + P D +P Q +KGD +++ A++IAKV Sbjct: 122 GPAGSGRRVDVILDGPNDYITKTMNTFDAPALPIPVQVSCKVKGDRHCAAVSCAAVIAKV 181 Query: 156 TRDRLM---RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 TRD LM + +Y YG+ + GY +A H+ I G + +HR+T+ Sbjct: 182 TRDHLMVDIAQGNPRYAPYGWAHNKGYGSAAHRDAIARLGVTPLHRVTW 230 >gi|317178062|dbj|BAJ55851.1| ribonuclease HII [Helicobacter pylori F16] Length = 204 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 95/197 (48%), Gaps = 25/197 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L +KI + + Sbjct: 2 ILGIDEAGRGCLAGSLFVAGVVCSEKTASEFLSMGLKDSKKLSPKKRFFLEDKIKTHGEV 61 Query: 82 S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA---- 135 + S ID + AI +EN + + IDG + AF Sbjct: 62 EFWVVKKSANEIDSLGLGACLKLAIQEILENGRSLANGIKIDGNT--------AFGLNKR 113 Query: 136 ------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +IKGD IA AS++AK +DR MR H + +YG+D + GY T +H + + Sbjct: 114 HSNIQTIIKGDEKIAQIAMASVLAKAFKDREMRQLHALFEEYGWDKNCGYGTKQHIEAMI 173 Query: 190 EKGPSCIHRLTFRPLRN 206 + G + HR +F L+N Sbjct: 174 KLGATPFHRHSF-TLKN 189 >gi|289524535|ref|ZP_06441389.1| ribonuclease HII [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502226|gb|EFD23390.1| ribonuclease HII [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 129 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 51/119 (42%), Positives = 70/119 (58%) Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +A+ +ID+ NI +ATL A+ A +L + P ++DG DL A+ K D Sbjct: 2 QAANPWFIDRANILQATLWAMEKAASSLPLSPDIVIVDGNQKIPDLSFPQKALPKADKNV 61 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 L + AASI+AKV RDR+M K YPDYGF H GYPT +H++ + G S IHR TF+ Sbjct: 62 LVVGAASIVAKVIRDRVMCAYDKLYPDYGFAVHKGYPTKEHRRALALMGASPIHRKTFK 120 >gi|266625575|ref|ZP_06118510.1| ribonuclease HII [Clostridium hathewayi DSM 13479] gi|288862520|gb|EFC94818.1| ribonuclease HII [Clostridium hathewayi DSM 13479] Length = 130 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 55/117 (47%), Positives = 71/117 (60%), Gaps = 3/117 (2%) Query: 91 IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAAS 150 ID+ NI +AT +A+ AV L P+ L D +IP L +IKGD+ S+SIAA S Sbjct: 15 IDEINILQATYEAMRLAVSQLTNPPQVLLNDAVTIP-GLDILQVPIIKGDAKSVSIAAGS 73 Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 I+AKVTRD +M K +P+YGF H GY TA H +KE GP IHR +F +RN Sbjct: 74 IMAKVTRDHMMVEYDKLFPEYGFAKHKGYGTAAHIAALKEFGPCAIHRRSF--IRNF 128 >gi|188528111|ref|YP_001910798.1| ribonuclease HII [Helicobacter pylori Shi470] gi|238691950|sp|B2UV86|RNH2_HELPS RecName: Full=Ribonuclease HII; Short=RNase HII gi|188144351|gb|ACD48768.1| ribonuclease HII [Helicobacter pylori Shi470] Length = 204 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 95/190 (50%), Gaps = 11/190 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG LAG + VA ++ + G+ DSKK+ KKR L +KI + I Sbjct: 2 ILGIDEAGRGCLAGSLFVAGVVCGEKTALEFLEMGLKDSKKLGPKKRFFLEDKIKTHGEI 61 Query: 82 S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136 + S ID + A+ +EN + + IDG + + + P + Sbjct: 62 KFWVVKKSANEIDNLGLGACLKLAVQEILENGRSLANQIKIDGNTAFGLNKRYP-NIQTI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK +DR MR H + +YG+D + GY T +H + + + G + Sbjct: 121 IKGDERIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRHSF-TLKN 189 >gi|295396057|ref|ZP_06806241.1| ribonuclease HII [Brevibacterium mcbrellneri ATCC 49030] gi|294971145|gb|EFG47036.1| ribonuclease HII [Brevibacterium mcbrellneri ATCC 49030] Length = 231 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 68/200 (34%), Positives = 102/200 (51%), Gaps = 28/200 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKKREELYEKITSS-- 78 V G+DEVGRG +AGPV V A+ D P G+ DSKK++ + R E++ ++ Sbjct: 34 VVGMDEVGRGCVAGPVGVGAVWCDLEALCAGGFPAGLRDSKKLTPRPRSLAAERVRATWE 93 Query: 79 -AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-------------- 123 A+++ AS Q ID I A A A+ L ++DG+ Sbjct: 94 HAVVAY--ASPQEIDAMGISAALSLAGRRALAQLPAA-DLVMLDGKFNWLGTDPGLLGGD 150 Query: 124 -SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 S E P + + + GD + IAAAS+IAKV RD +M +++ YG+ S+VGYP+ Sbjct: 151 VSHVEVPPVRMY--VGGDDQRIPIAAASLIAKVDRDAVMSSLDREHHGYGWASNVGYPSP 208 Query: 183 KHQQVIKEKGPSCIHRLTFR 202 H+Q I + G + HR +FR Sbjct: 209 AHKQAIADLGVTPWHRKSFR 228 >gi|108563693|ref|YP_628009.1| ribonuclease HII [Helicobacter pylori HPAG1] gi|123373683|sp|Q1CRT7|RNH2_HELPH RecName: Full=Ribonuclease HII; Short=RNase HII gi|107837466|gb|ABF85335.1| ribonuclease HII [Helicobacter pylori HPAG1] Length = 204 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 11/188 (5%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG LAG + VA + + G+ DSKK+S KKR L +KI + + Sbjct: 4 GIDEAGRGCLAGSLFVAGVACSEKTALEFLKMGLKDSKKLSQKKRFFLEDKIKTHGEVGF 63 Query: 83 -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138 + S + ID + AI +EN + IDG + + + P +IK Sbjct: 64 FVVKKSAEAIDSLGLGACLKLAIEEILENGCSLANEIKIDGNTAFGLNKRYP-NIQTIIK 122 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD IA AS++AK +DR M H + +YG+D + GY T +H + I + G + HR Sbjct: 123 GDETIAQIAMASVLAKAAKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHR 182 Query: 199 LTFRPLRN 206 +F L+N Sbjct: 183 HSF-TLKN 189 >gi|315587212|gb|ADU41593.1| ribonuclease H [Helicobacter pylori 35A] Length = 204 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 94/195 (48%), Gaps = 25/195 (12%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L KI + + Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEGKIKTHGEVEF 63 Query: 83 -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA------ 135 + S ID+ + AI +EN + + IDG + AF Sbjct: 64 WVVKKSANEIDRLGLGACLKLAIQEILENGRSLTNGIKIDGNT--------AFGLNKRYS 115 Query: 136 ----VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD IA AS++AK +DR MR H + +YG+D + GY T +H + + + Sbjct: 116 NIQTIIKGDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKL 175 Query: 192 GPSCIHRLTFRPLRN 206 G + HR +F L+N Sbjct: 176 GATPFHRHSF-TLKN 189 >gi|227875952|ref|ZP_03994075.1| possible ribonuclease H [Mobiluncus mulieris ATCC 35243] gi|227843484|gb|EEJ53670.1| possible ribonuclease H [Mobiluncus mulieris ATCC 35243] Length = 271 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 49/224 (21%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI- 80 V G+DEVGRGALAGPV + ++ + P G+NDSK ++ ++RE L + I S Sbjct: 48 VGGMDEVGRGALAGPVCIGVTVVSATELAAGFPPGLNDSKALTARRREALVQPIQSWVKD 107 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQV---IPRSALIDGR-------------- 123 +I A++ ID+ I A A + A+ L +P+ L+DG Sbjct: 108 FAIGEATNMEIDEMGIMAAMRLAGWRALNQLDARGHLPQKLLLDGNVDYLQAEHQANLFD 167 Query: 124 --------------------SIPEDLP-----CQAFAVIKGDSISLSIAAASIIAKVTRD 158 + P P + ++K D + ++A A+++AKV RD Sbjct: 168 AQWHLMNPAQPAQPAQPAMGTTPAHNPPPAPLLKVQTLVKADQHAATVAGAAVLAKVYRD 227 Query: 159 RLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 M + + P YG+ +VGY T H++ I GPS HR T++ Sbjct: 228 AFM--SRLEDPGYGWSHNVGYGTKAHREAISRLGPSRWHRHTWK 269 >gi|254779865|ref|YP_003057971.1| ribonuclease HII [Helicobacter pylori B38] gi|254001777|emb|CAX30008.1| Ribonuclease HII (RNase HII) [Helicobacter pylori B38] Length = 204 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 95/200 (47%), Gaps = 25/200 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 V GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L +KI + + Sbjct: 2 VLGIDEAGRGCLAGSLFVAGVVCSEKTALEFLKMGLKDSKKLSPKKRFFLEDKIKTHGEV 61 Query: 82 S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA---- 135 + S ID + AI +EN + IDG + AF Sbjct: 62 GFFVVKKSANEIDSLGLGACLKLAIQEILENGCSLANEIKIDGNT--------AFGLNKR 113 Query: 136 ------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +IKGD IA AS++AK +DR M H + +YG+D + GY T +H + + Sbjct: 114 YSNIQTIIKGDETIAQIAMASVLAKAAKDREMLELHALFKEYGWDKNCGYGTKQHIEAMS 173 Query: 190 EKGPSCIHRLTFRPLRNLSV 209 + G + HR +F L+N ++ Sbjct: 174 KLGATPFHRHSF-TLKNRTL 192 >gi|254445906|ref|ZP_05059382.1| ribonuclease HII [Verrucomicrobiae bacterium DG1235] gi|198260214|gb|EDY84522.1| ribonuclease HII [Verrucomicrobiae bacterium DG1235] Length = 250 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 106/226 (46%), Gaps = 39/226 (17%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--------NIPFGINDSKKISHKKREE 70 R KN + GIDE GRGALAGPVV AA+ INDSK +S +REE Sbjct: 13 RLKNRIGLIGIDEAGRGALAGPVVAAAVAAKEGFYDSEWCKRNASSINDSKLLSLAQREE 72 Query: 71 LYEKI-----TSSAIISISSASHQYIDKHNIHKATLDAIYHAVEN--------------- 110 LY K+ +I + S I+ NI AT A+ AVE Sbjct: 73 LYAKLRWLEREGRILIGVGKGSISEIEDLNILGATQAAMKRAVEEILEQGDISPHDPDPL 132 Query: 111 ----LQVIPRSALIDGRSIPEDLPCQAF-----AVIKGDSISLSIAAASIIAKVTRDRLM 161 L PR L R + + P + AV+KGDS SL IA ASIIAKVTRDR+M Sbjct: 133 FDAALGGEPRETLSQWRLLVDGKPMKHLGFKHEAVVKGDSKSLCIAMASIIAKVTRDRIM 192 Query: 162 RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 +YP Y S GY T H+ I + GP+ IHR F LR L Sbjct: 193 MALDCEYPHYDLASSKGYATVLHRTAILDNGPTKIHRPLF--LRKL 236 >gi|283782847|ref|YP_003373601.1| ribonuclease HII [Gardnerella vaginalis 409-05] gi|298253324|ref|ZP_06977116.1| ribonuclease HII [Gardnerella vaginalis 5-1] gi|283442005|gb|ADB14471.1| ribonuclease HII [Gardnerella vaginalis 409-05] gi|297532719|gb|EFH71605.1| ribonuclease HII [Gardnerella vaginalis 5-1] Length = 247 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 83/243 (34%), Positives = 124/243 (51%), Gaps = 48/243 (19%) Query: 4 NSIPERPHFELEA-MVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-----DPNNIPFGI 57 ++IP P F+ E ++ E W V G+DEVGRG+LAGPV+V A ++ N +P G+ Sbjct: 6 SNIPLVPSFKYEQDLLCEGYDW-VIGLDEVGRGSLAGPVMVGAAVIGIKQVKENYMPEGL 64 Query: 58 NDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNIHK----ATLDAIYHAVENLQ 112 DSK +S K+REELYE + ++ S ++ ID+ I A L AI E+++ Sbjct: 65 ADSKLLSEKRREELYEPLQKWCTTWAVGSCTNTEIDEWGISYALGVAALKAISKVEEDIK 124 Query: 113 VIPRS------------------ALIDGRS--------------IPEDLPCQAFAVIKGD 140 + S A++DG IPE P + ++K D Sbjct: 125 KLSFSVNANTRENTRENSNFRIAAILDGPCDYIDKVANTFDAPYIPE--PVKVHTLVKAD 182 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHK--KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 S+AAA+++AKVTRD LM K KY Y + S+ GY + H+ IK+ GPS +HR Sbjct: 183 RQCASVAAAAVLAKVTRDNLMVSLAKNPKYAAYDWASNKGYGSLAHRNAIKKVGPSDLHR 242 Query: 199 LTF 201 L++ Sbjct: 243 LSW 245 >gi|257063750|ref|YP_003143422.1| ribonuclease HII [Slackia heliotrinireducens DSM 20476] gi|256791403|gb|ACV22073.1| ribonuclease HII [Slackia heliotrinireducens DSM 20476] Length = 258 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/183 (37%), Positives = 101/183 (55%), Gaps = 16/183 (8%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87 G+DEVGRG +AGP+ VAA++L G+NDSK+++ R + E I + A+ + Sbjct: 73 GLDEVGRGPVAGPLTVAAVVLPDAPRIEGLNDSKQVAPAARTRMAESIKACAL----AWD 128 Query: 88 HQYIDKHNIHKATLDAIYHAV---------ENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 ++I+ H+I + A E L + + L+DG P + + +IK Sbjct: 129 IEFIEPHDIDAYGMSACLRTAFGQAIAAIDEQLSGVA-AVLLDGN--PLHIDPRERNIIK 185 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD+ IAAASIIAKV RD LM K+YP YGFDS+ GY +A H + I+ G + +HR Sbjct: 186 GDAKCAPIAAASIIAKVERDALMCEYAKEYPQYGFDSNKGYGSADHIEAIRTYGLTPVHR 245 Query: 199 LTF 201 +F Sbjct: 246 ASF 248 >gi|170781194|ref|YP_001709526.1| ribonuclease HII [Clavibacter michiganensis subsp. sepedonicus] gi|169155762|emb|CAQ00883.1| ribonuclease HII [Clavibacter michiganensis subsp. sepedonicus] Length = 219 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 76/204 (37%), Positives = 107/204 (52%), Gaps = 12/204 (5%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAIILDPNNIPFGINDSKKISHKK 67 P FE+E + V G DEVGRGALAGPV V AA+ D + P G+ DSK +S K+ Sbjct: 6 PTFEIEHELLGAGAALVIGCDEVGRGALAGPVAVGMAAVGPDADAFPVGLRDSKMLSEKR 65 Query: 68 REELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQ-----VIPRSALID 121 RE L+ +++ A S + AS + +D I A A+ L ++ L+D Sbjct: 66 REALHPLVSAWAGHSAVGMASAEEVDALGITACLGLAGRRALVELHHLGVPLLDSVVLLD 125 Query: 122 GRS---IPEDL-PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 G P + P +K D S+AAAS++AKV RDRLM H++ P+YG+ + Sbjct: 126 GSHDWLTPALVHPVPVRLRVKADRDCASVAAASVLAKVHRDRLMAAWHEESPEYGWAGNK 185 Query: 178 GYPTAKHQQVIKEKGPSCIHRLTF 201 GY + H VI+ G S IHR T+ Sbjct: 186 GYGSPAHLDVIRANGASRIHRRTW 209 >gi|306823660|ref|ZP_07457035.1| ribonuclease HII [Bifidobacterium dentium ATCC 27679] gi|309802965|ref|ZP_07697066.1| ribonuclease HII [Bifidobacterium dentium JCVIHMP022] gi|304553367|gb|EFM41279.1| ribonuclease HII [Bifidobacterium dentium ATCC 27679] gi|308220432|gb|EFO76743.1| ribonuclease HII [Bifidobacterium dentium JCVIHMP022] Length = 234 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 117/228 (51%), Gaps = 39/228 (17%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--------DPNNIPFGINDSK 61 P +LE + + + G DEVGRG+LAGPV+V A + D ++P G+ DSK Sbjct: 7 PTLQLEREIAARGYDVIVGFDEVGRGSLAGPVMVGAAAIRTADLDGPDALDVPEGVADSK 66 Query: 62 KISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 ++ +RE ++E + S SA ++ ++S+ ID+ I A A A++ ++ R I Sbjct: 67 MLTEHRRETIFESLKSWSASWAVGASSNAEIDEWGISYALGVAALRALDEVE---RELGI 123 Query: 121 --DGRSI--------PED---------------LPCQAFAVIKGDSISLSIAAASIIAKV 155 DGRSI P D +P +KGD ++A A++IAKV Sbjct: 124 ADDGRSIRVGAILDGPNDYITKALGTFDAPDVPVPATVTTKVKGDRYCATVATAAVIAKV 183 Query: 156 TRDRLM-RIAHK-KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 TRDRLM + + +Y Y + + GY +A H++ I GPS +HR+++ Sbjct: 184 TRDRLMIELGERPEYAIYEWQRNKGYGSAAHREAIAAHGPSDLHRISW 231 >gi|217033640|ref|ZP_03439068.1| hypothetical protein HP9810_899g76 [Helicobacter pylori 98-10] gi|216943986|gb|EEC23420.1| hypothetical protein HP9810_899g76 [Helicobacter pylori 98-10] Length = 204 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 95/188 (50%), Gaps = 11/188 (5%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L ++I S + Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEKEIRSHDEVKF 63 Query: 83 -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138 + S ID + AI +EN + + IDG + + + P +IK Sbjct: 64 WVVKKSANEIDNLGLGACLKLAIQEILENGRSLANGIKIDGNTAFGLNKRYP-NIQTIIK 122 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD IA AS++AK +DR MR H + +YG+D + GY T +H + + + G + HR Sbjct: 123 GDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPFHR 182 Query: 199 LTFRPLRN 206 +F L+N Sbjct: 183 HSF-TLKN 189 >gi|315657113|ref|ZP_07909997.1| ribonuclease HII [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492216|gb|EFU81823.1| ribonuclease HII [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 235 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/210 (34%), Positives = 103/210 (49%), Gaps = 38/210 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD---------PNNIPFGINDSKKISHKKREELYEKIT 76 + G+DEVGRGALAGPV V +LD P P G+NDSK+++ ++R L + I Sbjct: 29 IGGMDEVGRGALAGPVCVGVAVLDQRSLENPDFPQGFPVGLNDSKQLTARRRVALQDPIQ 88 Query: 77 SSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQV---IPRSALIDGR--------- 123 + +I AS+ ID+ I A A + A+ L +P+ L+DG Sbjct: 89 AWVRDFAIGQASNTEIDELGIMSALRLAGWRALNELDARGHLPQRLLLDGNFDYLASPRQ 148 Query: 124 -----------SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 S PE ++KGD + IAAA+++AKV RD MR H P YG Sbjct: 149 PDLFAGAGNLVSSPE---VSVETLVKGDGKAAVIAAAAVLAKVYRDAFMRSLHD--PGYG 203 Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 + +VGY T H+ + E G S HR T++ Sbjct: 204 WARNVGYGTPAHKAGLAELGASVWHRKTWK 233 >gi|304389808|ref|ZP_07371767.1| ribonuclease HII [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326984|gb|EFL94223.1| ribonuclease HII [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 235 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 106/207 (51%), Gaps = 32/207 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD---------PNNIPFGINDSKKISHKKREELYEKIT 76 + G+DEVGRGALAGPV V +LD P P G+NDSK+++ ++R L + I Sbjct: 29 IGGMDEVGRGALAGPVCVGVAVLDQRSLDNPDFPQGFPVGLNDSKQLTARRRVALQDPIQ 88 Query: 77 SSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQV---IPRSALIDGR----SIPE- 127 + +I AS+ ID+ I A A + A+ L +P+ L+DG + P Sbjct: 89 AWVRDFAIGQASNTEIDELGIMPALRLAGWRALNELDARGHLPQRLLLDGNFDYLASPRQ 148 Query: 128 -DLPCQAF-----------AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 DL +A ++KGD + IAAA+++AKV RD MR H P YG+ Sbjct: 149 PDLFAEAGNLVSSPEVSVETLVKGDGKAAVIAAAAVLAKVYRDAFMRSLHD--PGYGWAR 206 Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +VGY T H+ + E G S HR T++ Sbjct: 207 NVGYGTPAHKAGLAELGASVWHRKTWK 233 >gi|257068188|ref|YP_003154443.1| ribonuclease HII [Brachybacterium faecium DSM 4810] gi|256559006|gb|ACU84853.1| ribonuclease HII [Brachybacterium faecium DSM 4810] Length = 272 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 97/194 (50%), Gaps = 20/194 (10%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKKREELYEKITSSAI 80 + G+DEVGRGALAGPV V A ++ +P G+ DSKK++ ++RE L E I S + Sbjct: 25 IVGVDEVGRGALAGPVAVGACAVEVVGGLAAPLPEGVRDSKKLTARRREALVEPILGSVL 84 Query: 81 I-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV--- 136 ++ AS ID+ I A A A++ L V + ++DG D+ A Sbjct: 85 AGAVGWASPAEIDEIGIMPALTTAALRALDLLGVAADAIVLDGDV---DVLTPALTAPGR 141 Query: 137 --------IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + D S+AAASI+AKV RD M + P+Y + S+ GY + H++ I Sbjct: 142 PTPLVHLQVSADRDCASVAAASILAKVARDARMVELDAEAPEYCWASNKGYGSKPHREAI 201 Query: 189 KEKGPSCIHRLTFR 202 G HR ++R Sbjct: 202 DRFGVHAHHRRSWR 215 >gi|298346453|ref|YP_003719140.1| putative ribonuclease H [Mobiluncus curtisii ATCC 43063] gi|298236514|gb|ADI67646.1| possible ribonuclease H [Mobiluncus curtisii ATCC 43063] Length = 235 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 106/207 (51%), Gaps = 32/207 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD---------PNNIPFGINDSKKISHKKREELYEKIT 76 + G+DEVGRGALAGPV V +LD P P G+NDSK+++ ++R L + I Sbjct: 29 IGGMDEVGRGALAGPVCVGVAVLDQRSLDNPDFPQGFPVGLNDSKQLTARRRVALQDPIQ 88 Query: 77 SSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQV---IPRSALIDGR----SIPE- 127 + +I AS+ ID+ I A A + A+ L +P+ L+DG + P Sbjct: 89 AWVRDFAIGQASNTEIDELGIMPALRLAGWRALNELDARGHLPQRLLLDGNFDYLASPRQ 148 Query: 128 -DLPCQAF-----------AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 DL +A ++KGD + IAAA+++AKV RD MR H P YG+ Sbjct: 149 PDLFAEAGNLVSSPEVSVETLVKGDGKAAVIAAAAVLAKVYRDAFMRSLHD--PGYGWAR 206 Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +VGY T H+ + E G S HR T++ Sbjct: 207 NVGYGTPAHKAGLAELGASVWHRKTWK 233 >gi|308062608|gb|ADO04496.1| ribonuclease HII [Helicobacter pylori Cuz20] Length = 204 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 94/190 (49%), Gaps = 11/190 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG LAG + VA ++ + G+ DSKK+ KKR L +KI + I Sbjct: 2 ILGIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLGPKKRFFLEDKIKTHGEI 61 Query: 82 S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136 + S ID + A+ +EN + IDG + + + P + Sbjct: 62 KFWVVKKSANEIDNLGLGVCLKLAVQEILENDHSLANQIKIDGNTAFGLNKRYP-NIQTI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK +DR MR H + +YG+D + GY T +H + + + G + Sbjct: 121 IKGDERIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRHSF-TLKN 189 >gi|306819232|ref|ZP_07452943.1| ribonuclease HII [Mobiluncus mulieris ATCC 35239] gi|304648014|gb|EFM45328.1| ribonuclease HII [Mobiluncus mulieris ATCC 35239] Length = 274 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 52/227 (22%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI- 80 V G+DEVGRGALAGPV + ++ + P G+NDSK ++ ++RE L + I S Sbjct: 48 VGGMDEVGRGALAGPVCIGVTVVSATELAAGFPPGLNDSKALTARRREALVQPIQSWVKD 107 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQV---IPRSALIDGR-------------- 123 +I A++ ID+ I A A + A+ L +P+ L+DG Sbjct: 108 FAIGEATNMEIDEMGIMAAMRLAGWRALNQLDARGHLPQKLLLDGNVDYLQAEHQANLFD 167 Query: 124 -----------------------SIPEDLP-----CQAFAVIKGDSISLSIAAASIIAKV 155 + P P + ++K D + ++A A+++AKV Sbjct: 168 AQWHLMNPAQPAQPAQPAQPAMGTTPAHNPPPAPLLKVQTLVKADQHAATVAGAAVLAKV 227 Query: 156 TRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 RD M + + P YG+ +VGY T H++ I GPS HR T++ Sbjct: 228 YRDAFM--SRLEDPGYGWSHNVGYGTKAHREAISRLGPSRWHRHTWK 272 >gi|163839835|ref|YP_001624240.1| ribonuclease HII [Renibacterium salmoninarum ATCC 33209] gi|162953311|gb|ABY22826.1| ribonuclease HII [Renibacterium salmoninarum ATCC 33209] Length = 217 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 69/202 (34%), Positives = 98/202 (48%), Gaps = 27/202 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN-NIPF-GINDSKKISHKKREELYEKITSSAII-S 82 VAG DEVGRGALAGPV V +++D + P G+ DSK +S ++RE L I A+ + Sbjct: 8 VAGADEVGRGALAGPVSVGMVVVDASAQKPLAGVKDSKLLSAQERESLVPLIKHWAVGHA 67 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDG----------------- 122 + AS ID + A A A L V + ++DG Sbjct: 68 VGHASAAEIDAGGLTSALRLAGTRAWNQLLAAGVRAETVILDGNHNWLASAQLSIFDTPT 127 Query: 123 --RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + D+P Q IK D LS+AAAS++AKV RD ++ P +G+ + GY Sbjct: 128 ADEELGVDVPVQTK--IKADLSCLSVAAASVLAKVERDAILIELDAANPQFGWKINKGYA 185 Query: 181 TAKHQQVIKEKGPSCIHRLTFR 202 TA H+ I G S HR+++R Sbjct: 186 TASHRNAIDLHGASQWHRMSWR 207 >gi|307700238|ref|ZP_07637279.1| ribonuclease HII [Mobiluncus mulieris FB024-16] gi|307614620|gb|EFN93848.1| ribonuclease HII [Mobiluncus mulieris FB024-16] Length = 257 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 102/221 (46%), Gaps = 46/221 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI- 80 V G+DEVGRGALAGPV + ++ + P G+NDSK ++ ++RE L + I S Sbjct: 37 VGGMDEVGRGALAGPVCIGVTVVSATELAAGFPPGLNDSKALTARRREALVQPIQSWVKD 96 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQV---IPRSALIDGR-------------- 123 +I A++ ID+ I A A + A+ L +P+ L+DG Sbjct: 97 FAIGEATNMEIDEMGIMAAMRLAGWRALNQLDARGHLPQKLLLDGNVDYLQAEHQANLFD 156 Query: 124 -----------------SIPEDLP-----CQAFAVIKGDSISLSIAAASIIAKVTRDRLM 161 + P P + ++K D + ++A A+++AKV RD M Sbjct: 157 AQWHLMNPAQPAQPAMGTTPAHNPPPAPLLKVQTLVKADQHAATVAGAAVLAKVYRDAFM 216 Query: 162 RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 + + P YG+ +VGY T H++ I G S HR T++ Sbjct: 217 --SRLEDPGYGWSHNVGYGTKAHREAISRLGSSRWHRHTWK 255 >gi|171741370|ref|ZP_02917177.1| hypothetical protein BIFDEN_00451 [Bifidobacterium dentium ATCC 27678] gi|283455277|ref|YP_003359841.1| ribonuclease [Bifidobacterium dentium Bd1] gi|171276984|gb|EDT44645.1| hypothetical protein BIFDEN_00451 [Bifidobacterium dentium ATCC 27678] gi|283101911|gb|ADB09017.1| Putative ribonuclease [Bifidobacterium dentium Bd1] Length = 234 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 116/228 (50%), Gaps = 39/228 (17%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--------DPNNIPFGINDSK 61 P +LE + + + G DEVGRG+LAGPV+V A + D ++P G+ DSK Sbjct: 7 PTLQLEREIAARGYDVIVGFDEVGRGSLAGPVMVGAAAIRTADLDGPDALDVPEGVADSK 66 Query: 62 KISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQV------- 113 ++ +RE ++E + S SA ++ ++S+ ID+ I A A A++ ++ Sbjct: 67 MLTEHRRETIFESLKSWSASWAVGASSNAEIDEWGISYALGVAALRALDEVERELGIADD 126 Query: 114 ---IPRSALIDGRSIPED---------------LPCQAFAVIKGDSISLSIAAASIIAKV 155 I A++DG P D +P +KGD ++A A++IAKV Sbjct: 127 GRPIRVGAILDG---PNDYITKALGTFDAPDVPVPATVTTKVKGDRYCATVATAAVIAKV 183 Query: 156 TRDRLM-RIAHK-KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 TRDRLM + + +Y Y + + GY +A H++ I GPS +HR+++ Sbjct: 184 TRDRLMIELGERPEYAIYEWQRNKGYGSAAHREAIAAHGPSDLHRISW 231 >gi|109946755|ref|YP_663983.1| ribonuclease HII [Helicobacter acinonychis str. Sheeba] gi|123173609|sp|Q17ZE2|RNH2_HELAH RecName: Full=Ribonuclease HII; Short=RNase HII gi|109713976|emb|CAJ98984.1| rnhB [Helicobacter acinonychis str. Sheeba] Length = 193 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 63/195 (32%), Positives = 94/195 (48%), Gaps = 25/195 (12%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITS--SAII 81 GIDE GRG L G + VA ++ + + G+ DSKK+S KR L +KI S Sbjct: 4 GIDEAGRGCLVGSLFVAGVVCGEKIALDFLKMGLKDSKKLSQNKRFFLEDKIKSHDEVKF 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA------ 135 + S ID ++ A+ +E L + ++ IDG + AF Sbjct: 64 CVIKKSAGEIDSLSLGVCLKLAVQEILEKLSPLAQTINIDGNT--------AFGLNKRYS 115 Query: 136 ----VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD IA AS++AK ++DR M H + +YG+D + GY T KH + I + Sbjct: 116 NLKTIIKGDEKIAQIAMASVLAKTSKDREMLELHALFKEYGWDKNCGYGTKKHIEAIAKL 175 Query: 192 GPSCIHRLTFRPLRN 206 G + HR +F L+N Sbjct: 176 GATPFHRHSF-ALKN 189 >gi|315655024|ref|ZP_07907928.1| ribonuclease HII [Mobiluncus curtisii ATCC 51333] gi|315490680|gb|EFU80301.1| ribonuclease HII [Mobiluncus curtisii ATCC 51333] Length = 236 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 71/210 (33%), Positives = 103/210 (49%), Gaps = 38/210 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD---------PNNIPFGINDSKKISHKKREELYEKIT 76 + G+DEVGRGALAGPV V ++D P P G+NDSK+++ ++R L + I Sbjct: 30 IGGMDEVGRGALAGPVCVGVAVVDQRSLENPDFPQGFPVGLNDSKQLTARRRVALQDPIQ 89 Query: 77 SSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQV---IPRSALIDGR--------- 123 + +I AS+ ID+ I A A + A+ L +P+ L+DG Sbjct: 90 AWVRDFAIGQASNTEIDELGIMPALRLAGWRALNELDARGHLPQRLLLDGNFDYLASPRQ 149 Query: 124 -----------SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 S PE ++KGD + IAAA+++AKV RD MR H P YG Sbjct: 150 PDLFAGAGNLVSSPE---VSVETLVKGDGKAAVIAAAAVLAKVYRDAFMRSLHD--PGYG 204 Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 + +VGY T H+ + E G S HR T++ Sbjct: 205 WTRNVGYGTPAHKAGLAELGASVWHRKTWK 234 >gi|332674122|gb|AEE70939.1| ribonuclease HII [Helicobacter pylori 83] Length = 204 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 94/195 (48%), Gaps = 25/195 (12%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG LAG + VA ++ + + G+ DSKK+S KKR L +KI + I Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCNEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEIKF 63 Query: 83 -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA------ 135 + S ID + AI +EN + + IDG + AF Sbjct: 64 WVVKKSANEIDNLGLGVCLKLAIQEILENGRSLTNKIKIDGNT--------AFGLNKRYS 115 Query: 136 ----VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD IA AS++AK +DR M H + +YG+D + GY T +H + + + Sbjct: 116 NIQTIIKGDEKIAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAMIKL 175 Query: 192 GPSCIHRLTFRPLRN 206 G + HR +F L+N Sbjct: 176 GATPFHRHSF-TLKN 189 >gi|294790566|ref|ZP_06755724.1| ribonuclease HII [Scardovia inopinata F0304] gi|294458463|gb|EFG26816.1| ribonuclease HII [Scardovia inopinata F0304] Length = 279 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 128/276 (46%), Gaps = 88/276 (31%) Query: 10 PHFELEAMVR---EKNMWPVAGIDEVGRGALAGPVVVAAII-----LDPNN--------- 52 PH+ +EA + + W + G DEVGRG LAGPV+V A L P + Sbjct: 3 PHWRVEAALAAGPDNPQW-IIGCDEVGRGCLAGPVMVGACAFRLPDLRPPDYASEHKFDY 61 Query: 53 -----------IPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKA- 99 IP G+ DSK ++ KKRE LY+ + S S ++ SAS++ ID+ I A Sbjct: 62 ESDYESAMTASIPSGLKDSKLLTEKKREALYDPLASWSDTWAVGSASNKEIDQVGIISAL 121 Query: 100 ------TLDAIYHAV-------------------------ENLQVIPRSALIDGRSIPED 128 LD I + L +P S ++DG P D Sbjct: 122 GLAAVRALDQIGQTISGSSSEAVDASEETEDTDDHSSREARGLSQLPASLILDG---PYD 178 Query: 129 ----------LPCQ-----AF-----AVIKGDSISLSIAAASIIAKVTRDRLM-RIAHK- 166 LP Q AF V+KGD S+AAAS++AKVTRDR M R+A K Sbjct: 179 YISPILQSILLPDQIRSRFAFRLSVTTVVKGDQTCASVAAASVMAKVTRDRYMIRLADKN 238 Query: 167 -KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++ YG+ + GY TA+H++ IK+ GP+ HR+++ Sbjct: 239 PQWEPYGWARNKGYGTAQHRRAIKDLGPTSYHRVSW 274 >gi|315452719|ref|YP_004072989.1| ribonuclease HII [Helicobacter felis ATCC 49179] gi|315131771|emb|CBY82399.1| ribonuclease HII [Helicobacter felis ATCC 49179] Length = 195 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 64/186 (34%), Positives = 91/186 (48%), Gaps = 10/186 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG G + VA + D N + + +SK++S KR E +I I Sbjct: 2 ILGIDEAGRGCWCGSLFVAGVSCDQNVASAFVRLELKESKQLSRTKRFEFATQIIQDTRI 61 Query: 82 S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI--PEDLPCQAF-AV 136 + + S S ID + +AI V L I L DG ++ E ++F A+ Sbjct: 62 TSVVVSKSAPEIDHKGLSVCMQEAITEIVSKLPTIKHVRL-DGNTLFKLEFAHLESFEAI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA ASI+AK +DR M + ++YP+YGF H GY T H I + G Sbjct: 121 IKGDDKIPQIAMASILAKAHKDREMSVLDERYPEYGFARHCGYGTCTHALAIAKYGLIQE 180 Query: 197 HRLTFR 202 HR +F+ Sbjct: 181 HRKSFK 186 >gi|307637994|gb|ADN80444.1| Ribonuclease H II [Helicobacter pylori 908] gi|325996599|gb|ADZ52004.1| Ribonuclease HII [Helicobacter pylori 2018] gi|325998189|gb|ADZ50397.1| Ribonuclease HII [Helicobacter pylori 2017] Length = 191 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 93/190 (48%), Gaps = 11/190 (5%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG L G + VA ++ + G+ DSKK+S KKR L KI + + Sbjct: 4 GIDEAGRGCLVGSLFVAGVVCGGKTALEFLEMGLKDSKKLSPKKRFFLENKIKTHDEVEF 63 Query: 83 -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138 + S + ID + AI VEN + IDG + + + P +IK Sbjct: 64 FVVKKSAEAIDHLGLGACLKLAIQEIVENGCSLANEIKIDGNTAFGLNKRYP-NIQTIIK 122 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD IA AS++AK +DR M H + +YG+D + GY T +H + I + G + HR Sbjct: 123 GDETIAQIAMASVLAKAAKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHR 182 Query: 199 LTFRPLRNLS 208 +F L+N S Sbjct: 183 HSF-TLKNRS 191 >gi|2352484|gb|AAC46185.1| RNAseH II [Lactococcus lactis subsp. cremoris MG1363] Length = 166 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 63/164 (38%), Positives = 96/164 (58%), Gaps = 3/164 (1%) Query: 45 AIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDA 103 A+IL N G+NDSKK+ K + +I A+ I + + ID+ NI++AT A Sbjct: 1 AVILPKNCKIRGLNDSKKVPKSKHHAILSEIQEKALAIGVGIVDAEKIDEVNIYEATKIA 60 Query: 104 IYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163 + AV L + P LID + DLP +I GD+ S SIAAASI+AKVTRD +M+ Sbjct: 61 MIQAVSKLSLKPEHLLIDAMVL--DLPIAQTKIIHGDARSASIAAASIVAKVTRDEMMKD 118 Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 ++P+Y F+ + GY TAKH + + G + IHR ++ P++++ Sbjct: 119 FALEFPEYDFEHNAGYGTAKHLAALTKYGITRIHRKSYEPIKSM 162 >gi|291277271|ref|YP_003517043.1| ribonuclease HII [Helicobacter mustelae 12198] gi|290964465|emb|CBG40315.1| ribonuclease HII [Helicobacter mustelae 12198] Length = 243 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 99/200 (49%), Gaps = 17/200 (8%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKI 75 ++NM + GIDE GRG+L G + V+ + + GI DSKK + R+ L + Sbjct: 44 QENM--LCGIDEAGRGSLCGSLFVSGVACTKDLAQMLQIQGIKDSKKTTKNTRKNLANLL 101 Query: 76 --TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-----PED 128 T I + + ID+ + + + ++NLQ ++DG + P Sbjct: 102 IHTPGIHFCIIEKTAKEIDEKGLSCCMRECLQSIIKNLQSFTSHFIMDGNTTFGFHPPP- 160 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 P +IKGD++ I+AAS++AK +D M K YP+YGF SH GY T+ H I Sbjct: 161 -PLYLKTLIKGDALLPQISAASVLAKYAKDCEMMHLDKIYPNYGFASHSGYGTSAHIAQI 219 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 K GP+ HR F L++L+ Sbjct: 220 KALGPTKEHRRNF--LKDLT 237 >gi|148272555|ref|YP_001222116.1| ribonuclease HII [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830485|emb|CAN01420.1| rnhB [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 219 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 16/206 (7%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKK 67 P +LE + V G DEVGRGALAGPV V ++ P+ + F G+ DSK +S K+ Sbjct: 6 PTLDLEHELLHAGAALVIGCDEVGRGALAGPVAVGMAVVGPDAVGFPPGLRDSKMLSEKR 65 Query: 68 REELYEKITSSAIIS-ISSASHQYIDKHNI-------HKATLDAIYHAVENLQVIPRSAL 119 RE L+ + S + AS +D+ I + L ++HA + ++ L Sbjct: 66 REALHPVVAGWVRHSAVGMASAAEVDELGITACLGLAGRRALVELHHA--GVPLLDSVVL 123 Query: 120 IDGRS--IPEDL--PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 +DG + L P +K D S+AAAS++AKV RDR+M + H+ P+YG+ Sbjct: 124 LDGAHDWLTPHLAHPVPVRLRVKADRDCASVAAASVLAKVERDRMMAVWHEDLPEYGWAG 183 Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTF 201 + GY +A H I+ +G S +HR T+ Sbjct: 184 NKGYGSAAHLDAIRARGASPLHRRTW 209 >gi|317013110|gb|ADU83718.1| ribonuclease HII [Helicobacter pylori Lithuania75] Length = 204 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 63/195 (32%), Positives = 93/195 (47%), Gaps = 25/195 (12%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG LAG + VA ++ + + G+ DSKK+S KKR L +KI + + Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCNDQTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEVKF 63 Query: 83 -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA------ 135 + S ID + A+ +EN + IDG + AF Sbjct: 64 FVVKKSTNEIDNLGLGACLKLAMQEILENGCSLANEIKIDGNT--------AFGLNKRYS 115 Query: 136 ----VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD IA AS++AK +DR M H + +YG+D + GY T +H + I + Sbjct: 116 NIQTIIKGDEKIAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKL 175 Query: 192 GPSCIHRLTFRPLRN 206 G + HR +F L+N Sbjct: 176 GATPFHRHSF-TLKN 189 >gi|242309717|ref|ZP_04808872.1| ribonuclease [Helicobacter pullorum MIT 98-5489] gi|239523718|gb|EEQ63584.1| ribonuclease [Helicobacter pullorum MIT 98-5489] Length = 204 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 90/184 (48%), Gaps = 7/184 (3%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSS 78 N + GIDE GRG + G + V +IL P + + DSKK+S K R+ L +I Sbjct: 13 NPLEICGIDEAGRGCIGGSLFVCGVILTPTFPKILLEQLQDSKKLSQKTRDNLAPQIQKY 72 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 A + S + ID + +++ + NLQ P L DG Q +IK Sbjct: 73 AKFHLVKKSAEEIDTKGLSLCIKESLQEILTNLQA-PH-YLFDGNCNFGIHSLQT--LIK 128 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GDS SI+AASI+AK +D+ YP YGF SH GY T +H + I + G HR Sbjct: 129 GDSKIPSISAASILAKNAKDKESAKLDNLYPQYGFKSHKGYGTKEHLKAILDFGYCKEHR 188 Query: 199 LTFR 202 +++ Sbjct: 189 KSYK 192 >gi|317178386|dbj|BAJ56174.1| ribonuclease HII [Helicobacter pylori F30] Length = 204 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/197 (31%), Positives = 94/197 (47%), Gaps = 25/197 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L +KI + + Sbjct: 2 ILGIDEAGRGCLAGSLFVAGVVCGEKTASEFLSMGLKDSKKLSPKKRFFLEDKIKTHGEM 61 Query: 82 S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA---- 135 + S ID + AI +EN + + IDG + AF Sbjct: 62 KFWVVKKSANEIDGLGLGACLKLAIQEILENGRSLANKIKIDGNT--------AFGLNKR 113 Query: 136 ------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +IKGD IA AS++AK +DR M H + +YG+D + GY T +H + + Sbjct: 114 YSNIETIIKGDEKIAQIAMASVLAKAFKDREMLKLHALFKEYGWDKNCGYGTKQHIEAMI 173 Query: 190 EKGPSCIHRLTFRPLRN 206 + G + HR +F L+N Sbjct: 174 KLGATPFHRHSF-TLKN 189 >gi|300741389|ref|ZP_07071410.1| ribonuclease HII [Rothia dentocariosa M567] gi|300380574|gb|EFJ77136.1| ribonuclease HII [Rothia dentocariosa M567] Length = 264 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 75/216 (34%), Positives = 103/216 (47%), Gaps = 40/216 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELYEKITSSAIISI 83 +AG+DEVGRGALAGPV V +LD N I G+ DSK ++ K+RE L +I +I Sbjct: 20 IAGLDEVGRGALAGPVSVGVAVLDQQNQRILEGLTDSKALTPKRREALIPRIQKWCSYAI 79 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSI-----PEDL-----P 130 + ID + A A A+ +L + P +AL+DG+ PE+L P Sbjct: 80 GHTTPAEIDVLGMTYALRLAAQRALADLAYRGLYPEAALLDGKHDWLSPPPENLFDSMDP 139 Query: 131 CQ-------------------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165 +IKGD SIAAAS++AKV RD M Sbjct: 140 VHRRYEELLHRVWNGANSAVEKGWSGPVTTIIKGDYQCASIAAASVVAKVDRDAFMESLS 199 Query: 166 KKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + P YG+ + GY + H+Q I E GPS HRL++ Sbjct: 200 AENPHYGWVKNKGYGSVAHRQAISEYGPSIYHRLSW 235 >gi|256371394|ref|YP_003109218.1| Ribonuclease H [Acidimicrobium ferrooxidans DSM 10331] gi|256007978|gb|ACU53545.1| Ribonuclease H [Acidimicrobium ferrooxidans DSM 10331] Length = 200 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 68/191 (35%), Positives = 97/191 (50%), Gaps = 17/191 (8%) Query: 28 GIDEVGRGALAGPVVVAA----------IILDPNNIPFGINDSKKISHKKREELYEKITS 77 GIDEVGRGA AGPVVV A I+ P G+ DSK +S RE + + Sbjct: 12 GIDEVGRGAWAGPVVVGAARGSVAAAAAILAHPRG---GVRDSKALSPAAREAALGALEA 68 Query: 78 SAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 + + ++ SAS + IDK + A A + A+ + L+DGR +P + + Sbjct: 69 AGLELTVGSASAREIDKLGLTGALRLAAHRALGAASEL--EVLLDGR-VPYVEAGRVHCI 125 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 + GD IAAASI+AKV RD M + YGF H GY TA+H++ + E G + Sbjct: 126 VGGDRRHPLIAAASIVAKVRRDAFMVALDELAAGYGFARHKGYGTAEHRRALSEHGVTPW 185 Query: 197 HRLTFRPLRNL 207 HR +F P+ + Sbjct: 186 HRRSFGPIGGM 196 >gi|326333667|ref|ZP_08199904.1| ribonuclease HII [Nocardioidaceae bacterium Broad-1] gi|325948573|gb|EGD40676.1| ribonuclease HII [Nocardioidaceae bacterium Broad-1] Length = 218 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 94/197 (47%), Gaps = 21/197 (10%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKREELYEKITSSAIIS- 82 + +DEVGRGAL GPV + +++ P G+ DSK ++ + RE L K+ A+ S Sbjct: 9 LGAVDEVGRGALCGPVSIGIVVISAATRTAPQGVRDSKLLTPEARETLAPKVRRWAVDSA 68 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ---------- 132 + A ID+ I A A A+ L V P + L+DG P Q Sbjct: 69 VGHALASEIDEVGIMAAMRLAGQRALSALDVRPDALLLDGNHNYLTPPAQEGLFGEVSAM 128 Query: 133 --------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +IK D ++AAASI+AK +RD LM H++YPDY + + GY H Sbjct: 129 VEEIEVPPVTTMIKADMKCAAVAAASILAKTSRDALMVALHEEYPDYAWADNKGYSAPAH 188 Query: 185 QQVIKEKGPSCIHRLTF 201 ++ GPS HR ++ Sbjct: 189 IAALERLGPSAYHRRSW 205 >gi|212716712|ref|ZP_03324840.1| hypothetical protein BIFCAT_01647 [Bifidobacterium catenulatum DSM 16992] gi|212660416|gb|EEB20991.1| hypothetical protein BIFCAT_01647 [Bifidobacterium catenulatum DSM 16992] Length = 259 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 116/254 (45%), Gaps = 66/254 (25%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-------------------DP 50 P +LE + E+ + G DEVGRG+LAGPV+V A + P Sbjct: 7 PTLDLERAIAEQGYDVIVGFDEVGRGSLAGPVMVGAAAIWARDLDGAAGASQGGSQESSP 66 Query: 51 NNIPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNI------------- 96 +P G+ DSK ++ KRE +++++ A ++ +AS+ ID+ I Sbjct: 67 LEVPKGVADSKMLTEHKREAIFDELEQWCAAWAVGAASNTEIDEWGISYALGVAALRALA 126 Query: 97 -----------HKATLDAIYHAVENLQVIPRSALIDGRS----------------IPEDL 129 A + + E L + A++DG + IP D+ Sbjct: 127 EAERKLGIGGGESAGIAGSSESSEALNNLKIGAILDGPNDYITKALNTFDAPDVPIPADV 186 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLM--RIAHKKYPDYGFDSHVGYPTAKHQQV 187 C+ +KGD ++A A++IAKVTRDRLM A +Y Y + ++ GY +A H+ Sbjct: 187 TCK----VKGDRHCATVATAAVIAKVTRDRLMVKLAAQPQYAPYEWANNKGYGSAAHRDA 242 Query: 188 IKEKGPSCIHRLTF 201 I E GPS +HRL++ Sbjct: 243 IAEFGPSDLHRLSW 256 >gi|213029071|ref|ZP_03343518.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 109 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 61/104 (58%), Gaps = 1/104 (0%) Query: 103 AIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162 A+ AV L + P LIDG PE LP + AV+KGDS I+AASI+AKVTRD M Sbjct: 1 AMQRAVAGLHIAPEYVLIDGNRCPE-LPVPSMAVVKGDSRVAEISAASILAKVTRDAEMA 59 Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 +P YGF H GYPTA H + + + G + HR +F P++ Sbjct: 60 ALDIVFPQYGFAQHKGYPTAFHLEKLAQYGATAHHRRSFAPVKR 103 >gi|297242877|ref|ZP_06926815.1| ribonuclease HII [Gardnerella vaginalis AMD] gi|296889088|gb|EFH27822.1| ribonuclease HII [Gardnerella vaginalis AMD] Length = 255 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 124/251 (49%), Gaps = 56/251 (22%) Query: 4 NSIPERPHFELEA-MVREKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGI 57 ++IP P F+ E ++ E W V G+DEVGRG+LAGPV+V A ++ N +P G+ Sbjct: 6 SNIPLVPSFKYEQDLLSEGYDW-VIGLDEVGRGSLAGPVMVGAAVIGIKQVKENYMPEGL 64 Query: 58 NDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNIHK----ATLDAIYHAVENLQ 112 DSK +S K+REELYE + ++ S ++ ID+ I A L AI E+++ Sbjct: 65 ADSKLLSEKRREELYEPLQKWCTTWAVGSCTNTEIDEWGISYALGVAALKAISKVEEDIK 124 Query: 113 VIPRS--------------------------ALIDGRS--------------IPEDLPCQ 132 + S A++DG +PE P + Sbjct: 125 KLSFSVNADSGENTCAKLGADSGANSNFRIAAILDGPCDYIDKVANTFDAPYVPE--PVK 182 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK--KYPDYGFDSHVGYPTAKHQQVIKE 190 ++K D S+AAA+++AKVTRD LM K +Y Y + S+ GY + H+ IK+ Sbjct: 183 VHTLVKADRQCASVAAAAVLAKVTRDNLMVSLAKNPQYAAYDWASNKGYGSLAHRNAIKK 242 Query: 191 KGPSCIHRLTF 201 GPS +HRL++ Sbjct: 243 VGPSDLHRLSW 253 >gi|293189838|ref|ZP_06608552.1| ribonuclease HII [Actinomyces odontolyticus F0309] gi|292821253|gb|EFF80198.1| ribonuclease HII [Actinomyces odontolyticus F0309] Length = 223 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 75/200 (37%), Positives = 108/200 (54%), Gaps = 25/200 (12%) Query: 26 VAGIDEVGRGALAGPVV--VAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRGALAGPV VA I +D +P G+ DSK ++ ++RE L + + + + Sbjct: 19 VAGMDEVGRGALAGPVAVGVAFIGIDAAPVPEGLTDSKALTTRRREALVDPVREWTLACA 78 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR----SIPEDL------ 129 + AS Q ID I A A + A+ + ++P L+DG S P+DL Sbjct: 79 VGYASPQEIDDWGIIAALRLAGWRALAEVASHGLVPGGVLLDGSHDWLSAPDDLFGAIDG 138 Query: 130 PCQAFAV-------IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 P F V +K D+ +AAAS++AKV RD LM A + P YG+ S+ GY +A Sbjct: 139 PGDPFGVDLPVQMQVKADASCAVVAAASVLAKVERDHLM--AELEDPGYGWASNKGYGSA 196 Query: 183 KHQQVIKEKGPSCIHRLTFR 202 H + I E G S HR +++ Sbjct: 197 AHTRAIVELGVSDQHRRSWK 216 >gi|309811499|ref|ZP_07705281.1| ribonuclease HII [Dermacoccus sp. Ellin185] gi|308434550|gb|EFP58400.1| ribonuclease HII [Dermacoccus sp. Ellin185] Length = 233 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 69/216 (31%), Positives = 102/216 (47%), Gaps = 19/216 (8%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKK 67 P LE + VAG+DEVGRGALAGPV V ++D + +P G+ DSK + K Sbjct: 6 PTLRLERQLLRTGYTLVAGMDEVGRGALAGPVSVGVSVVDAATSTVPQGVKDSKLVPEPK 65 Query: 68 REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI- 125 R +L ++ A+ ++ AS ID + +A A A+ L V P ++DG+ Sbjct: 66 RPDLARRVRRWALDGAVGHASPTEIDALGMTRALRLAGTRALAQLSVRPDVVILDGKHDW 125 Query: 126 --------------PEDLPC-QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 PE P IK D S+A AS++AKV RD +M A + +P Sbjct: 126 LSEPETVGLLGLLEPESAPTWHVVTQIKADMRCSSVAGASLLAKVERDAMMVDAARDHPV 185 Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 YG+ + GY H I G +HR +++ R+ Sbjct: 186 YGWGINKGYSAPDHLAAIAAHGACDLHRRSWKTFRD 221 >gi|184200715|ref|YP_001854922.1| ribonuclease HII [Kocuria rhizophila DC2201] gi|183580945|dbj|BAG29416.1| ribonuclease HII [Kocuria rhizophila DC2201] Length = 266 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 110/238 (46%), Gaps = 41/238 (17%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD------------------P 50 RP +LE + VAG+DEVGRGALAGP V ++LD P Sbjct: 32 RPGLDLETELASSGARFVAGMDEVGRGALAGPASVGLVVLDVPRLLAGSGHDAAAPDPAP 91 Query: 51 NNIPF--GINDSKKISHKKREELYEKI-TSSAIISISSASHQYIDKHNIHKATLDAIYHA 107 ++P G+ DSK +S +R L ++ T +A ++ A ID I A A A Sbjct: 92 VSVPAWDGVRDSKALSAARRAVLAPRVATWAAGTAVGHAQPHEIDALGITAALRLAGLRA 151 Query: 108 VENLQV--IPRSALI-DG-------------RSIPEDLPCQAFAVIKGDSISLSIAAASI 151 + + P ALI DG P LP ++K D+ +S+AAASI Sbjct: 152 LAAVTSGGTPVDALILDGSHNWLEAPAVLGQEEDPVALPPVVRTLVKADARCVSVAAASI 211 Query: 152 IAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209 +AKV RD +M +++P Y + ++ GY +A H+ + G + HR ++ NL V Sbjct: 212 VAKVERDAIMVELGQEHPAYEWGANKGYGSAAHRAALVTHGTTRHHRRSW----NLGV 265 >gi|311113471|ref|YP_003984693.1| ribonuclease HII [Rothia dentocariosa ATCC 17931] gi|310944965|gb|ADP41259.1| ribonuclease HII [Rothia dentocariosa ATCC 17931] Length = 264 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 74/216 (34%), Positives = 104/216 (48%), Gaps = 40/216 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELYEKITSSAIISI 83 +AG+DEVGRGALAGPV V +LD N I G+ DSK ++ K+RE L +I +I Sbjct: 20 IAGLDEVGRGALAGPVSVGVAVLDQQNQQILEGLTDSKALTPKRREALIPRIQKWCSYAI 79 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR-------------SIP- 126 + ID + A A A+ +L + P + L+DG+ SI Sbjct: 80 GHTTPAEIDVLGMTYALRLAAQRALADLAHRGLYPEAVLLDGKHDWLSPQPANLLDSIDP 139 Query: 127 -----EDLPCQAF----------------AVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165 E+L + + +IKGD SIAAAS++AKV RD M Sbjct: 140 VYRRYEELLHRIWNGANSAAEKGWSGPVTTIIKGDYQCASIAAASVVAKVDRDAFMESLS 199 Query: 166 KKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + P YG+ + GY + H+Q I E GPS HRL++ Sbjct: 200 AENPHYGWAKNKGYGSVAHRQAISEYGPSIYHRLSW 235 >gi|330835291|ref|YP_004410019.1| ribonuclease HII [Metallosphaera cuprina Ar-4] gi|329567430|gb|AEB95535.1| ribonuclease HII [Metallosphaera cuprina Ar-4] Length = 208 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 89/167 (53%), Gaps = 17/167 (10%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS-SAIIS 82 GIDE GRG L GP++VA I+LD G+ DSK+++ K+REEL+ I S I+ Sbjct: 4 GIDEAGRGCLIGPMIVAGIVLDEKGREELKELGVKDSKRLTRKRREELFNAIIERSKGIA 63 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVI-PRSALID--GR-----SIPEDLPCQAF 134 ++ A ID +N++ T + + +L + P+ +D G+ + E L A Sbjct: 64 VAKAEPLEIDSNNLNALTYRKVSEIISSLSWLNPKIVTVDKVGKETEVIELIERLGFVAN 123 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 V K D + + ++ASIIAKV RD ++ KY D+G GYP+ Sbjct: 124 VVHKADELFIEASSASIIAKVIRDNIIERLKLKYGDFG----SGYPS 166 >gi|225351148|ref|ZP_03742171.1| hypothetical protein BIFPSEUDO_02736 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158604|gb|EEG71846.1| hypothetical protein BIFPSEUDO_02736 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 249 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 119/243 (48%), Gaps = 54/243 (22%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----------------- 52 P +LE + E+ + G DEVGRG+LAGPV+V A + + Sbjct: 7 PTLDLERAIAEQGYDVIVGFDEVGRGSLAGPVMVGAAAIWARDLDGPAGASQGGSQESSH 66 Query: 53 --IPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDK----HNIHKATLDAIY 105 +P G+ DSK ++ KRE +++++ S A ++ +AS++ ID+ H + A L A+ Sbjct: 67 LEVPKGVADSKMLTEHKREAIFDELKSWCASWAVGAASNKEIDEWGISHALGVAALRALA 126 Query: 106 HAVENLQV----------IPRSALIDGRSIPED---------------LPCQAFAVIKGD 140 A L + + A++DG P D +P +KGD Sbjct: 127 QAEAKLGIDGNGMLSGKPVKVGAILDG---PNDYITKTLNTFDAPEVPVPANVTTKVKGD 183 Query: 141 SISLSIAAASIIAKVTRDRLM--RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 +++AAA++IAKVTRDRLM A +Y Y + + GY +A H+ I E GPS +HR Sbjct: 184 RYCVAVAAAAVIAKVTRDRLMVELGAQPQYEPYEWAHNKGYGSAAHRDAIAEFGPSDLHR 243 Query: 199 LTF 201 L++ Sbjct: 244 LSW 246 >gi|283458215|ref|YP_003362833.1| ribonuclease HII [Rothia mucilaginosa DY-18] gi|283134248|dbj|BAI65013.1| ribonuclease HII [Rothia mucilaginosa DY-18] Length = 278 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 80/244 (32%), Positives = 111/244 (45%), Gaps = 49/244 (20%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSK 61 + P E E + VAGIDEVGRG++AGPV V IL P+ G+ DSK Sbjct: 21 KATPPAADLEYEQQLFASGARTVAGIDEVGRGSMAGPVTVGVAILTPDATLEVGGLIDSK 80 Query: 62 KISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR----- 116 +S +RE + +I +++ ID+ + TL A L + R Sbjct: 81 ALSPARRESMVPEIRQWCAVAVGHVEPADIDRLGM---TLSLRLAAQRALAELARRGYRA 137 Query: 117 -SALIDGR----SIP-EDL-------PCQA--------------------------FAVI 137 +AL+DG+ + P EDL P QA VI Sbjct: 138 DAALLDGKHDWFTPPQEDLFSALAPDPAQAHYNALLAQAWEGAGEGGAGEPAQMPVTMVI 197 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD SIAAAS++AKV RD LM +YP YG+ + GY +A H++ I +GPS H Sbjct: 198 KGDYKCASIAAASVVAKVERDELMVQLDTRYPGYGWAKNKGYGSAAHREAISVQGPSPQH 257 Query: 198 RLTF 201 RL++ Sbjct: 258 RLSW 261 >gi|255326009|ref|ZP_05367097.1| ribonuclease HII [Rothia mucilaginosa ATCC 25296] gi|255296900|gb|EET76229.1| ribonuclease HII [Rothia mucilaginosa ATCC 25296] Length = 276 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 111/243 (45%), Gaps = 47/243 (19%) Query: 3 CNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDS 60 + P E E + VAGIDEVGRG++AGPV V IL P+ G+ DS Sbjct: 20 AKATPPAADLEYEQQLFASGARTVAGIDEVGRGSMAGPVTVGVAILTPDATLEVGGLIDS 79 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR---- 116 K +S +RE + +I +++ ID+ + TL A L + R Sbjct: 80 KALSPARRESMVPEIRQWCAVAVGHVEPADIDRLGM---TLSLRLAAQRALAELARRGYR 136 Query: 117 --SALIDGR----SIP-EDL-------PCQA------------------------FAVIK 138 +AL+DG+ + P EDL P QA VIK Sbjct: 137 ADAALLDGKHDWFTPPQEDLFSALAPDPAQAHYNALLAQAWEGAGGAGEPAQMPVTMVIK 196 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD SIAAAS++AKV RD LM +YP YG+ + GY +A H++ I +GPS HR Sbjct: 197 GDYKCASIAAASVVAKVERDELMVQLDIRYPGYGWAKNKGYGSAAHREAISVQGPSPQHR 256 Query: 199 LTF 201 L++ Sbjct: 257 LSW 259 >gi|227826588|ref|YP_002828367.1| ribonuclease HII [Sulfolobus islandicus M.14.25] gi|227829230|ref|YP_002831009.1| ribonuclease HII [Sulfolobus islandicus L.S.2.15] gi|229577999|ref|YP_002836397.1| ribonuclease HII [Sulfolobus islandicus Y.G.57.14] gi|229583752|ref|YP_002842253.1| ribonuclease HII [Sulfolobus islandicus M.16.27] gi|238618674|ref|YP_002913499.1| ribonuclease HII [Sulfolobus islandicus M.16.4] gi|284996585|ref|YP_003418352.1| hypothetical protein LD85_0182 [Sulfolobus islandicus L.D.8.5] gi|227455677|gb|ACP34364.1| ribonuclease HII [Sulfolobus islandicus L.S.2.15] gi|227458383|gb|ACP37069.1| ribonuclease HII [Sulfolobus islandicus M.14.25] gi|228008713|gb|ACP44475.1| ribonuclease HII [Sulfolobus islandicus Y.G.57.14] gi|228018801|gb|ACP54208.1| ribonuclease HII [Sulfolobus islandicus M.16.27] gi|238379743|gb|ACR40831.1| ribonuclease HII [Sulfolobus islandicus M.16.4] gi|284444480|gb|ADB85982.1| hypothetical protein LD85_0182 [Sulfolobus islandicus L.D.8.5] gi|323473667|gb|ADX84273.1| ribonuclease HII [Sulfolobus islandicus REY15A] gi|323476318|gb|ADX81556.1| ribonuclease HII [Sulfolobus islandicus HVE10/4] Length = 212 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 23/198 (11%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA-IIS 82 GIDE GRGAL GP++VA + + + + F G+ DSK+++ ++RE+L++ I S+ + Sbjct: 4 GIDEAGRGALIGPMIVAGVAISDSKLKFLKGIGVKDSKQLTRERREKLFDIIASTVDAFT 63 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVI-PRSALID--GRSIP-----EDLPCQAF 134 + ID +N++ T DA+ + +L V P +D G P L ++ Sbjct: 64 VVKVFPYEIDNYNLNDLTYDAVSKIILSLSVFNPEIVTVDKVGEEKPVIELIRKLGYKSN 123 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----TAKHQQVIKE 190 V K D + + +AASIIAKV RD + K Y D+G GYP T K + E Sbjct: 124 VVHKADVLFVEASAASIIAKVIRDNYIDELKKVYGDFG----SGYPADPRTIKWLKSFYE 179 Query: 191 KGPS--CIHRLTFRPLRN 206 K P+ I R +++ LR+ Sbjct: 180 KNPNPPPIVRRSWKILRS 197 >gi|224417741|ref|ZP_03655747.1| ribonuclease HII RNase HII [Helicobacter canadensis MIT 98-5491] gi|253827085|ref|ZP_04869970.1| ribonuclease HII [Helicobacter canadensis MIT 98-5491] gi|253510491|gb|EES89150.1| ribonuclease HII [Helicobacter canadensis MIT 98-5491] Length = 204 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 91/186 (48%), Gaps = 13/186 (6%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISHKKREELYEKITSS 78 N + GIDE GRG + G + V +IL P ++ + DSKK+S K R+ L +I Sbjct: 13 NPLEICGIDEAGRGCIGGSLFVCGVILGKSFPQSLLSQLQDSKKLSPKVRDTLAPQIKQY 72 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA--LIDGRSIPEDLPCQAF-A 135 A + + Q ID + +A+ + L +SA L DG + Q+ Sbjct: 73 AQFHLVKKTAQEIDLKGLSLCLKEALQEILTYL----KSAHYLFDGNC---NFKIQSLQT 125 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 +IKGDS +I+AASI+AK +D+ YP YGF SH GY T H + I + G Sbjct: 126 LIKGDSKVYAISAASILAKNAKDKESMELDLIYPQYGFKSHKGYGTKAHIEAISKFGYCK 185 Query: 196 IHRLTF 201 HR ++ Sbjct: 186 EHRKSY 191 >gi|229583211|ref|YP_002841610.1| ribonuclease HII [Sulfolobus islandicus Y.N.15.51] gi|228013927|gb|ACP49688.1| ribonuclease HII [Sulfolobus islandicus Y.N.15.51] Length = 212 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 66/199 (33%), Positives = 104/199 (52%), Gaps = 25/199 (12%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYE--KITSSAII 81 GIDE GRGAL GP++VA + + + + F G+ DSK+++ ++RE+L++ IT A Sbjct: 4 GIDEAGRGALIGPMIVAGVAISDSKLKFLKGIGVKDSKQLTRERREKLFDIIAITVDAFT 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVI-PRSALID--GRSIP-----EDLPCQA 133 + ++ ID +N++ T DA+ + +L V P +D G P L ++ Sbjct: 64 VVKVFPYE-IDNYNLNDLTYDAVSKIILSLSVFNPEIVTVDKVGEEKPVIELIRKLGYKS 122 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----TAKHQQVIK 189 V K D + + +AASIIAKV RD + K Y D+G GYP T K + Sbjct: 123 NVVHKADVLFVEASAASIIAKVIRDNYIDELKKVYGDFG----SGYPADPRTIKWLKSFY 178 Query: 190 EKGPS--CIHRLTFRPLRN 206 EK P+ I R +++ LR+ Sbjct: 179 EKNPNPPPIVRRSWKILRS 197 >gi|313141283|ref|ZP_07803476.1| ribonuclease [Helicobacter canadensis MIT 98-5491] gi|313130314|gb|EFR47931.1| ribonuclease [Helicobacter canadensis MIT 98-5491] Length = 194 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 89/184 (48%), Gaps = 9/184 (4%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISHKKREELYEKITSS 78 N + GIDE GRG + G + V +IL P ++ + DSKK+S K R+ L +I Sbjct: 3 NPLEICGIDEAGRGCIGGSLFVCGVILGKSFPQSLLSQLQDSKKLSPKVRDTLAPQIKQY 62 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF-AVI 137 A + + Q ID + +A+ + L+ L DG + Q+ +I Sbjct: 63 AQFHLVKKTAQEIDLKGLSLCLKEALQEILTYLK--SAHYLFDGNC---NFKIQSLQTLI 117 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGDS +I+AASI+AK +D+ YP YGF SH GY T H + I + G H Sbjct: 118 KGDSKVYAISAASILAKNAKDKESMELDLIYPQYGFKSHKGYGTKAHIEAISKFGYCKEH 177 Query: 198 RLTF 201 R ++ Sbjct: 178 RKSY 181 >gi|134298779|ref|YP_001112275.1| ribonuclease H [Desulfotomaculum reducens MI-1] gi|134051479|gb|ABO49450.1| Ribonuclease H [Desulfotomaculum reducens MI-1] Length = 355 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 65/179 (36%), Positives = 90/179 (50%), Gaps = 5/179 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 AGIDEVG ++AGP+V A ++L +NIP DSK+++ K EE+ I A I+ Sbjct: 89 AGIDEVGVSSIAGPMVAAVVVLPHDHNIPGIPRDSKEMTLKSIEEISSLIFEKADFWHIA 148 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQ-VIPR-SALIDGRSIPEDLPCQAFAVIKGDSI 142 S S + ID A ++ V P+ ++DG+ Q AV KGDSI Sbjct: 149 SISPKEIDDIGPELAREKLWMECANKVRSVFPKIRIIVDGKDKIPGFTKQN-AVSKGDSI 207 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++AA+I+AK D MRI H YP Y F + GYP +H IK G HR+ Sbjct: 208 FSGVSAAAIVAKQYCDNEMRILHNYYPQYNFSKNKGYPVYEHYVAIKNYGICPSHRINM 266 >gi|332670021|ref|YP_004453029.1| ribonuclease H [Cellulomonas fimi ATCC 484] gi|332339059|gb|AEE45642.1| Ribonuclease H [Cellulomonas fimi ATCC 484] Length = 272 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 66/219 (30%), Positives = 108/219 (49%), Gaps = 30/219 (13%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKK 67 PH E ++ VAG+DEVGRG+LAGPV V +++D + P G+ DSK ++ Sbjct: 20 PHLRHERVLLRDGARLVAGMDEVGRGSLAGPVSVGVVVVDVATRSAPRGVADSKLLTPAA 79 Query: 68 REELYEKITSSAII-SISSASHQYIDKHNIHKA-------TLDAIYHAVENLQVIPRSAL 119 R L + + ++ AS + ID I A L+ ++ AV + V+ L Sbjct: 80 RTALLPALGRWGVARAVGHASAEEIDAVGIIAALRLAGTRALETVHAAVGPVDVV----L 135 Query: 120 IDGR----SIP--EDL----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163 +DG S P +DL P + +K D ++AAAS++AK RD +M Sbjct: 136 LDGSHDWLSGPTQQDLFAAVDASAPTPPRVLTRVKADRTCATVAAASVLAKCERDAVMVD 195 Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 ++P+Y +D + GY + H +++ GP +HR ++R Sbjct: 196 LAARHPEYRWDENKGYSSPDHLAALRDHGPCVLHRRSWR 234 >gi|154509166|ref|ZP_02044808.1| hypothetical protein ACTODO_01687 [Actinomyces odontolyticus ATCC 17982] gi|153798800|gb|EDN81220.1| hypothetical protein ACTODO_01687 [Actinomyces odontolyticus ATCC 17982] Length = 223 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 74/200 (37%), Positives = 106/200 (53%), Gaps = 25/200 (12%) Query: 26 VAGIDEVGRGALAGPVV--VAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRGALAGPV VA I +D +P G+ DSK ++ ++RE L + + + + Sbjct: 19 VAGMDEVGRGALAGPVAVGVAFIGIDAAPVPEGLTDSKALTARRREALVDPVREWTLACA 78 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR----SIPEDL------ 129 + AS Q ID I A A A+ + ++P L+DG S P+DL Sbjct: 79 VGYASPQEIDDWGIIAALRLAGRRALAEVASHGLVPGGVLLDGSHDWLSAPDDLFGAIDG 138 Query: 130 PCQAFAV-------IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 P F V +K D+ +AAAS++AKV RD LM A + P YG+ S+ GY + Sbjct: 139 PGDPFGVDLPVQMQVKADASCAVVAAASVLAKVERDHLM--AELEDPGYGWASNKGYGST 196 Query: 183 KHQQVIKEKGPSCIHRLTFR 202 H + I E G S HR +++ Sbjct: 197 AHTRAIVELGVSDQHRRSWK 216 >gi|206896037|ref|YP_002247054.1| ribonuclease HII [Coprothermobacter proteolyticus DSM 5265] gi|206738654|gb|ACI17732.1| ribonuclease HII [Coprothermobacter proteolyticus DSM 5265] Length = 202 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 102/193 (52%), Gaps = 6/193 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P +ELE + K PV G+DEVGRGA+AGP++V A+ ++ DSK++S +R+ Sbjct: 5 PSWELEKGLFGK---PVVGVDEVGRGAVAGPLLVCAVRFH-SSPEVKWRDSKQMSPLQRK 60 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPED 128 ++ I S+ I A+ ID+ I A A+ + + + DG R + + Sbjct: 61 SVFANIVESSCFGIGLAAPWDIDRFGISFCLKQAAEEALAEIPLDDAIVVFDGKRPLTTE 120 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 +P ++KGD + S+AAAS++AKV RD LM P Y F +H GY T H + I Sbjct: 121 VP-DYQCMVKGDVLLPSVAAASVVAKVIRDELMVCLDSLLPGYEFSAHKGYGTKTHLEAI 179 Query: 189 KEKGPSCIHRLTF 201 + G + HR +F Sbjct: 180 RCFGITAQHRRSF 192 >gi|168070408|ref|XP_001786800.1| predicted protein [Physcomitrella patens subsp. patens] gi|162660445|gb|EDQ48386.1| predicted protein [Physcomitrella patens subsp. patens] Length = 240 Score = 81.3 bits (199), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 3/99 (3%) Query: 104 IYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR- 162 + AVE+L V P L+D ++ D P A+I GD++S SI AASI+AKVTRDRL + Sbjct: 1 MKQAVESLGVRPCHLLVDAETVDLDFP--QTAIIHGDAVSQSIGAASILAKVTRDRLCKE 58 Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I YP YG H GY T H+ ++ E GPS +HR +F Sbjct: 59 IWDLHYPAYGIAVHKGYATRHHRSMLIEHGPSPLHRRSF 97 >gi|291533379|emb|CBL06492.1| Ribonuclease HII [Megamonas hypermegale ART12/1] Length = 136 Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 50/117 (42%), Positives = 76/117 (64%), Gaps = 1/117 (0%) Query: 91 IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAAS 150 ID+ NI++A ++ +Y A+ L P + LID + E L ++IKGD+ S SIAAAS Sbjct: 17 IDRVNIYQAAMNGMYEAIYGLNPKPDAVLIDAMPL-ESLDIYHQSIIKGDAKSASIAAAS 75 Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 I+AKV RDR+M K YP YGF + GY T++H + +++ GP IHR +F P++++ Sbjct: 76 IVAKVERDRMMNEFDKIYPQYGFAKNKGYGTSEHLEALRKYGPCEIHRKSFEPIKSM 132 >gi|171184725|ref|YP_001793644.1| ribonuclease HII [Thermoproteus neutrophilus V24Sta] gi|254807995|sp|B1YB67|RNH2_THENV RecName: Full=Ribonuclease HII; Short=RNase HII gi|170933937|gb|ACB39198.1| ribonuclease HII [Thermoproteus neutrophilus V24Sta] Length = 198 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 106/206 (51%), Gaps = 38/206 (18%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSSA-----I 80 G+DE GRG + GP+V+A ++ D + G+ DSK++S ++RE LY+ I +A + Sbjct: 6 GGVDEAGRGPVVGPMVIAVVVGDGGVLARLGVRDSKRLSPERRERLYQLILEAADCVNYV 65 Query: 81 ISISSASHQYIDKHNIHKATLD----------AIYHAVENLQVIPR---SAL--IDGRSI 125 + + Y+ + ++ LD A + V++ V PR SAL I GR + Sbjct: 66 VVEPAVVDTYVWRGLLNALELDYTAKLIELCPADVYYVDSPDVDPRRYGSALEFITGRRV 125 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 A+ KG+S+ +AAASI+AKV RDRL+ + K+ D+G GYP+ Sbjct: 126 --------VAMHKGESVP-QVAAASIVAKVVRDRLVALLKKEVGDFGS----GYPSDPRT 172 Query: 186 QVIKEKG---PSCIHRLTFRPLRNLS 208 + + G P C+ R ++R LR S Sbjct: 173 REWLKWGRLPPECV-RWSWRTLRGES 197 >gi|240147025|ref|ZP_04745626.1| ribonuclease HII [Roseburia intestinalis L1-82] gi|257200803|gb|EEU99087.1| ribonuclease HII [Roseburia intestinalis L1-82] Length = 116 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/117 (43%), Positives = 71/117 (60%), Gaps = 2/117 (1%) Query: 32 VGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-ISSASHQY 90 +GRG LAGPVV A+IL + INDSKK++ KREELY++I A+ + I S Q Sbjct: 1 MGRGPLAGPVVAGAVILPKDCDILYINDSKKLTAVKREELYDEIMEKAVAAGIGMVSPQR 60 Query: 91 IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 ID+ NI +AT +A+ A+ L+ P L D +IPE + +IKGD+ S+SI Sbjct: 61 IDEINILQATYEAMREAISKLEPAPDILLNDAVTIPE-VTIPQVPIIKGDAKSISIG 116 >gi|237750687|ref|ZP_04581167.1| ribonuclease HII [Helicobacter bilis ATCC 43879] gi|229373777|gb|EEO24168.1| ribonuclease HII [Helicobacter bilis ATCC 43879] Length = 207 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 93/198 (46%), Gaps = 28/198 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYE---- 73 NM + GIDE GRG +AG + +A+++LD I DSK+++ +R+E + Sbjct: 10 NMALICGIDEAGRGCVAGSLFIASVMLDECYFESFKKLDIRDSKQLTQTQRQERADSIQE 69 Query: 74 ---------KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KI S ++I S + + + L A H +S + DG + Sbjct: 70 FLREHGGRVKIVSFDSVNIDSKGLGQCMQMGLKELLLHAKKHQC-------KSIIFDGNT 122 Query: 125 IPEDLPCQAF-AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + Q +IKGDS + I+AASI+AK +D M H YP Y S+ GY T Sbjct: 123 ---NFGVQEIDTLIKGDSKHVLISAASILAKTNKDSEMLTLHDLYPQYNLKSNKGYLTKA 179 Query: 184 HQQVIKEKGPSCIHRLTF 201 H + I + G S IHR ++ Sbjct: 180 HIESIAKHGYSPIHRKSY 197 >gi|242398404|ref|YP_002993828.1| Ribonuclease HII [Thermococcus sibiricus MM 739] gi|259494074|sp|C6A1I4|RNH2_THESM RecName: Full=Ribonuclease HII; Short=RNase HII gi|242264797|gb|ACS89479.1| Ribonuclease HII [Thermococcus sibiricus MM 739] Length = 224 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 91/178 (51%), Gaps = 30/178 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA-I 80 + GIDE GRG + GP+V+AA+++D + I G+ DSKK+S KKREEL+EKI Sbjct: 3 LGGIDEAGRGPVVGPLVIAAVVIDESKIEKFEALGVKDSKKLSPKKREELFEKIIELVDD 62 Query: 81 ISISSASHQYIDKH--NIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI- 137 I S + IDK ++ ++ + +L++ P ID + E + F ++ Sbjct: 63 YFILELSPEDIDKREGTMNDFEVENFAKVLNSLKIKPDLVYIDAADVNE----ERFGIVV 118 Query: 138 --------------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K DS + +AAASI+AKVTRD+ + + Y + G GYP+ Sbjct: 119 REKLSFYPKIIAEHKADSKYIPVAAASILAKVTRDKAIERLKEIYGNIG----SGYPS 172 >gi|328907963|gb|EGG27723.1| ribonuclease HII [Propionibacterium sp. P08] Length = 119 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 1/107 (0%) Query: 95 NIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 + +A + + AV L + P L DG + + L + KGDS+ +AAASI+AK Sbjct: 2 GMQEADISGLRRAVARLGIEPGYVLSDGFPV-DGLTVPDLGMWKGDSVCACVAAASIVAK 60 Query: 155 VTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 V RDR+M ++ P Y F H GY TA H++ ++E GPSC HR+++ Sbjct: 61 VVRDRIMIAMDREVPGYDFAVHKGYATALHRRRLEELGPSCQHRMSY 107 >gi|212223919|ref|YP_002307155.1| ribonuclease HII [Thermococcus onnurineus NA1] gi|226736826|sp|B6YVT5|RNH2_THEON RecName: Full=Ribonuclease HII; Short=RNase HII gi|212008876|gb|ACJ16258.1| ribonuclease HII [Thermococcus onnurineus NA1] Length = 227 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 22/174 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA-I 80 +AGIDE GRG + GP+V+AA+++D N+P G+ DSKK++ K+RE L+++I Sbjct: 3 LAGIDEAGRGPVLGPMVIAAVVVDEGNVPKLEELGVKDSKKLTPKRRERLFDEIVQLLDD 62 Query: 81 ISISSASHQYIDKH--NIHKATLDAIYHAVENLQVIPRSALIDGRSIPE----------- 127 I + ID +++ ++ A+ +L+V P ID + E Sbjct: 63 YVILELWPEEIDSREGTLNEFEVENFVKALNSLKVKPDVVYIDAADVKEARFGEEIKAKL 122 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 D A K D + ++AASI+AKV RDR + +Y + G GYP+ Sbjct: 123 DFEADIIAEHKADDKFVPVSAASILAKVARDRAIEKLKDQYGEIG----SGYPS 172 >gi|224437531|ref|ZP_03658489.1| ribonuclease HII [Helicobacter cinaedi CCUG 18818] gi|313143983|ref|ZP_07806176.1| ribonuclease HII [Helicobacter cinaedi CCUG 18818] gi|313129014|gb|EFR46631.1| ribonuclease HII [Helicobacter cinaedi CCUG 18818] Length = 239 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 104/234 (44%), Gaps = 53/234 (22%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSSA-- 79 MW +AGIDE GRG + G + VA +I NI FG DSKK+S K+RE +Y+ + S Sbjct: 1 MW-LAGIDEAGRGCICGALFVAGVIGREENIAHFGAKDSKKLSPKQRERIYQTLLESQHK 59 Query: 80 ---IISISSASHQYIDKHNIHKATLDAI---------YHAVENL--QVIPRSA------- 118 + ++ IDK + A + I + ++NL Q + ++ Sbjct: 60 GEIGLFVAQIEAWEIDKFGLSIAMKNGIEQILCRIADFATLQNLIGQNVEQNTAKHNLLE 119 Query: 119 --------------------LIDGRS-----IPEDLPCQAFAV---IKGDSISLSIAAAS 150 ++DG + IP L V +K D I ++ AS Sbjct: 120 QDVEQNPTDSTDSKNALQEIIMDGNTTFQAKIPHILTQSGVGVQTLVKADDIMPIVSCAS 179 Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AKV++DR M K YP Y + GY T +H++ I + G HR +F+ L Sbjct: 180 IVAKVSKDRQMHELDKLYPQYFLAKNKGYGTLQHKKAIAKNGYCPHHRKSFKIL 233 >gi|88855258|ref|ZP_01129923.1| ribonuclease HII [marine actinobacterium PHSC20C1] gi|88815786|gb|EAR25643.1| ribonuclease HII [marine actinobacterium PHSC20C1] Length = 211 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/192 (36%), Positives = 100/192 (52%), Gaps = 20/192 (10%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKREELYEKIT--SSAII 81 V G DEVGRGA+AGPV V + P P G+ DSK +S K+RE L E +T + + Sbjct: 22 VIGCDEVGRGAIAGPVGVGMTAMTPAHGAWPIGLRDSKMLSQKRRE-LLEPLTLEWAPLS 80 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDLPCQAFAV 136 ++ A +D I A A A+ L V+ L+DG + D A +V Sbjct: 81 AVGYADATEVDSIGITAALGLAGKRALIQLHEAGVDVMASVVLLDGST---DWLSGALSV 137 Query: 137 -------IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +K D +S+AAAS++AKV RDRLM A +YP Y + S+ GY +A H I+ Sbjct: 138 APRVHTRVKADRDCVSVAAASVVAKVQRDRLMIEADGEYPGYHWPSNKGYGSAAHFDAIR 197 Query: 190 EKGPSCIHRLTF 201 + G + +HR T+ Sbjct: 198 QLGATELHRHTW 209 >gi|70606743|ref|YP_255613.1| ribonuclease HII [Sulfolobus acidocaldarius DSM 639] gi|109896186|sp|Q4JA60|RNH2_SULAC RecName: Full=Ribonuclease HII; Short=RNase HII gi|68567391|gb|AAY80320.1| ribonuclease HII [Sulfolobus acidocaldarius DSM 639] Length = 212 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 90/177 (50%), Gaps = 29/177 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS-SAI 80 + GIDE GRG+L GP+VVA + +D N + F G+ DSKK++ KKRE L+ I S Sbjct: 3 LVGIDEAGRGSLIGPMVVAGVAIDSNFLKFLSEIGVKDSKKLTRKKREYLFGVILEYSYA 62 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK-- 138 IS+ A + ID N+++ T A+ +Q+I ++ + + D A AV + Sbjct: 63 ISLVKAYPEEIDSENLNEITYRAM------IQIIHSMSVYNPSIVTVDKVGNASAVEREI 116 Query: 139 ------------GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 D + ++AASIIAKV RD ++ K Y D+G GYP K Sbjct: 117 ININSSPRVENNADVKYVEVSAASIIAKVVRDNIINELKKTYGDFG----SGYPGDK 169 >gi|15899137|ref|NP_343742.1| ribonuclease HII [Sulfolobus solfataricus P2] gi|284173748|ref|ZP_06387717.1| ribonuclease HII [Sulfolobus solfataricus 98/2] gi|74539626|sp|Q97W56|RNH2_SULSO RecName: Full=Ribonuclease HII; Short=RNase HII gi|13815686|gb|AAK42532.1| Ribonuclease HII (rnhB) [Sulfolobus solfataricus P2] gi|261600886|gb|ACX90489.1| ribonuclease HII [Sulfolobus solfataricus 98/2] Length = 212 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 105/198 (53%), Gaps = 23/198 (11%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA-IIS 82 GIDE GRGAL GP++VA +++ + F G+ DSK+++ ++RE+L++ + ++ + Sbjct: 4 GIDEAGRGALIGPMIVAGVVISDTKLKFLKGIGVKDSKQLTRERREKLFDIVANTVEAFT 63 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE---DLPCQAF 134 + ID +N++ T DA+ + +L +++ + D + + E L ++ Sbjct: 64 VVKVFPYEIDNYNLNDLTYDAVSKIILSLSSFNPEIVTVDKVGDEKPVIELINKLGYKSN 123 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----TAKHQQVIKE 190 V K D + + +AASIIAKV RD + + Y D+G GYP T K + E Sbjct: 124 VVHKADVLFVEASAASIIAKVIRDNYIDELKQVYGDFG----SGYPADPRTIKWLKSFYE 179 Query: 191 KGPS--CIHRLTFRPLRN 206 K P+ I R +++ LR+ Sbjct: 180 KNPNPPPIIRRSWKILRS 197 >gi|207108743|ref|ZP_03242905.1| ribonuclease HII [Helicobacter pylori HPKX_438_CA4C1] Length = 189 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 11/179 (6%) Query: 37 LAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS--ISSASHQY 90 +AG + VA + D + G+ DSKK+S KKR L +KI + + + S + Sbjct: 1 MAGSLFVAGVACDEKTALEFLKMGLKDSKKLSQKKRFFLEDKIKTHGEVKFFVVKKSAEA 60 Query: 91 IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIKGDSISLSIA 147 ID + AI +EN + IDG + + + P +IKGD IA Sbjct: 61 IDSLGLGACLRLAIEEILENGCSLANEIKIDGNTAFGLNKRYP-HIQTIIKGDETIAQIA 119 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 AS++AK +DR MR H + +YG+D + GY T +H + I + G + HR +F L+N Sbjct: 120 MASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHRHSF-TLKN 177 >gi|258653296|ref|YP_003202452.1| ribonuclease H [Nakamurella multipartita DSM 44233] gi|258556521|gb|ACV79463.1| Ribonuclease H [Nakamurella multipartita DSM 44233] Length = 244 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 102/225 (45%), Gaps = 31/225 (13%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHK 66 RPH +E + + +A +DEVGRGALAGPV V +++ P +P G+ DSK ++ + Sbjct: 6 RPHLRVEKQLMRDGVTRLAAMDEVGRGALAGPVSVGVVVVTPEVRRVPPGLADSKLLTPE 65 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-- 123 R+ L + ++ AS ID I A A A+ L + L+DG Sbjct: 66 ARQRLVAPVRRWVQEYAVGHASADEIDAIGIIAALRTAGRRALAELSGPVDAILLDGNHN 125 Query: 124 ---------SIPEDLPCQAFAV-----------------IKGDSISLSIAAASIIAKVTR 157 + P+ L F V IK D ++A AS++AK R Sbjct: 126 YLREPAAPAAAPDPLAAPLFEVAAEAVAPADPEPAVHVRIKADMTCAAVAGASVLAKTER 185 Query: 158 DRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 D ++ YP YGF + GY T +H ++E GP +HR ++R Sbjct: 186 DAILTGLGPDYPAYGFAVNKGYGTPEHLAALREHGPCAVHRRSWR 230 >gi|315230435|ref|YP_004070871.1| ribonuclease HII [Thermococcus barophilus MP] gi|315183463|gb|ADT83648.1| ribonuclease HII [Thermococcus barophilus MP] Length = 227 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 28/177 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELY----EKITS 77 + GIDE GRG + GP+V+AA+++D N+ G+ DSKK++ ++RE+L+ E + Sbjct: 6 LGGIDEAGRGPVIGPLVIAAVVIDEKNLSKLEALGVRDSKKLTPRRREKLFNEIIELLDD 65 Query: 78 SAIISISSASHQYIDKH--NIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-------- 127 AII +S + ID+ +++ ++ + +L+V P ID I E Sbjct: 66 YAIIELSP---EQIDEREGTMNEFEIENFVRVLNSLKVKPDVLYIDAADIKEKRFGEIIG 122 Query: 128 ---DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + + A K D+ L ++AASI+AKVTRD+ + K+Y + G GYP+ Sbjct: 123 KGLNFSPKIIAEHKADAKYLPVSAASILAKVTRDKAIEKLKKQYGEIG----SGYPS 175 >gi|289178076|gb|ADC85322.1| Ribonuclease HII [Bifidobacterium animalis subsp. lactis BB-12] Length = 290 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 75/256 (29%), Positives = 117/256 (45%), Gaps = 67/256 (26%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKK 62 P F LE + + G DEVGRG+LAGPV+V A N+ P + DSK Sbjct: 35 PSFALERQIAADGFDVIVGFDEVGRGSLAGPVMVGAAAFLARNLDEAQTAMPQYLADSKT 94 Query: 63 ISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKA-------TLDAIYHAV------ 108 ++ +RE LYE + + +I SAS+ ID I A LD + A+ Sbjct: 95 LTEHRRESLYEPLQAWVDGFAIGSASNAEIDAWGISHALGIAALRALDGVERALGMGSPG 154 Query: 109 -------------------------ENLQVIPRSALIDGRSIPED--------------- 128 ++ + A++DG P D Sbjct: 155 DSEIRGFDERCKYSGTWAYTKHSPQQHADGLHVGAILDG---PNDYISKALGTFEAPAVP 211 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM-RIA--HKKYPDYGFDSHVGYPTAKHQ 185 +P Q ++K D+ S+AAA+++AKVTRDRLM ++A H +Y YG++ + GY + H+ Sbjct: 212 MPAQVRTLVKADAQCASVAAAAVLAKVTRDRLMEQLARDHAEYARYGWERNKGYGSKAHR 271 Query: 186 QVIKEKGPSCIHRLTF 201 + I + GPS +HR+++ Sbjct: 272 EAIAQCGPSDLHRVSW 287 >gi|146080572|ref|XP_001464032.1| ribonuclease hii [Leishmania infantum JPCM5] gi|134068122|emb|CAM66407.1| putative ribonuclease HII [Leishmania infantum JPCM5] gi|322497431|emb|CBZ32505.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 268 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 105/252 (41%), Gaps = 87/252 (34%) Query: 37 LAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITS----------------- 77 +AGPV VAA + + P + + DSKK+ R E E + + Sbjct: 1 MAGPVGVAATLYRISATPVRYAVLDSKKMKEIDRAETLEAMCAELSDAGVEGFVGTTVRD 60 Query: 78 ------------------SAIISISSASHQYIDKHNIHKATLDAI----------YHAVE 109 +A++ +S I++ NI ATL+ + Y+AV Sbjct: 61 GTCCLVRYQRRKPLQAVAAALVDVS-----VINERNILNATLEGMSAVCDAVVRSYNAVS 115 Query: 110 NLQVI-PRSA--LIDGRSIP---------EDLPCQAF----------------------A 135 L + P + LIDG +P + + QA Sbjct: 116 GLDTLTPLTCAILIDGNRVPWTFLSGEERQRVCVQAVRKVEARKRIGVEYPALDGFGCTT 175 Query: 136 VIKGDSISLSIAAASIIAKVTRDRL-MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 V+KGD+ LSIAAASI+AKV RD + + H+ +P YGFD H GY TA H+ + GPS Sbjct: 176 VVKGDATLLSIAAASIVAKVARDAYAVSVMHRAFPQYGFDHHKGYCTAAHKAELARWGPS 235 Query: 195 CIHRLTFRPLRN 206 HRL + P++ Sbjct: 236 RFHRLDYAPVKG 247 >gi|32265505|ref|NP_859537.1| ribonuclease HII [Helicobacter hepaticus ATCC 51449] gi|32261553|gb|AAP76603.1| ribonuclease HII [Helicobacter hepaticus ATCC 51449] Length = 207 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 95/205 (46%), Gaps = 26/205 (12%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSS--- 78 MW VAGIDE GRG + G + +A II + I FG DSKK+ K+R +Y + S Sbjct: 1 MW-VAGIDEAGRGCICGGLFIAGIIANEQVIAQFGAKDSKKMLPKQRVRVYNALLDSQKR 59 Query: 79 AIISISSASHQY--IDKHNIHKATLDAIYHAVENL-----------QVIPRSALIDGRS- 124 I A Q IDK+ + A I + L Q P +IDG + Sbjct: 60 GEIGFYVAQIQAWDIDKYGLSWAMRSGIEEVLSYLGSYMLEQNILVQNQPLDIVIDGNTT 119 Query: 125 ----IPEDLPCQAF---AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 IP L + +IKGD + I+ AS++AKV++D M + YP Y + Sbjct: 120 FGAHIPTFLAHKDVHLKTLIKGDELMPIISCASVVAKVSKDSQMYMLDNLYPQYLLAKNK 179 Query: 178 GYPTAKHQQVIKEKGPSCIHRLTFR 202 GY T +H++ I G HR +F+ Sbjct: 180 GYATLEHKKQIMRYGYCPHHRKSFK 204 >gi|157866086|ref|XP_001681749.1| ribonuclease hii [Leishmania major strain Friedlin] gi|68125048|emb|CAJ02388.1| putative ribonuclease HII [Leishmania major strain Friedlin] Length = 268 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 104/252 (41%), Gaps = 87/252 (34%) Query: 37 LAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITS----------------- 77 +AGPV VAA + + P + + DSKK+ R E E + + Sbjct: 1 MAGPVGVAATLYRISATPVRYAVMDSKKMKESDRAETLEAMCAELSDAGVEGFVGTTVRD 60 Query: 78 ------------------SAIISISSASHQYIDKHNIHKATLDAI----------YHAVE 109 +A++ +S I++ NI ATL+ + Y+AV Sbjct: 61 GACCLVRYQRRKPLQAVAAALVDVS-----VINERNILNATLEGMSAVCEAVVRSYNAVS 115 Query: 110 NLQVI-PRSA--LIDGRSIP---------EDLPCQAF----------------------A 135 L + P + LIDG +P + + QA Sbjct: 116 GLGTLTPLTCAILIDGNRVPWTFLSGEERQRVCVQAVRKVEARKRIGVEYPALDGFSCTT 175 Query: 136 VIKGDSISLSIAAASIIAKVTRDRL-MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 V+KGD+ LSIAAASI+AKV RD + + H +P YGFD H GY TA H+ + GPS Sbjct: 176 VVKGDATLLSIAAASIVAKVARDAYAVSVMHPAFPQYGFDHHKGYCTAAHKAELARWGPS 235 Query: 195 CIHRLTFRPLRN 206 HRL + P++ Sbjct: 236 RFHRLDYAPVKG 247 >gi|183601863|ref|ZP_02963232.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis HN019] gi|219682777|ref|YP_002469160.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis AD011] gi|241190353|ref|YP_002967747.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195759|ref|YP_002969314.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218748|gb|EDT89390.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis HN019] gi|219620427|gb|ACL28584.1| ribonuclease [Bifidobacterium animalis subsp. lactis AD011] gi|240248745|gb|ACS45685.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250313|gb|ACS47252.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793340|gb|ADG32875.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis V9] Length = 258 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 75/256 (29%), Positives = 117/256 (45%), Gaps = 67/256 (26%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKK 62 P F LE + + G DEVGRG+LAGPV+V A N+ P + DSK Sbjct: 3 PSFALERQIAADGFDVIVGFDEVGRGSLAGPVMVGAAAFLARNLDEAQTAMPQYLADSKT 62 Query: 63 ISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKA-------TLDAIYHAV------ 108 ++ +RE LYE + + +I SAS+ ID I A LD + A+ Sbjct: 63 LTEHRRESLYEPLQAWVDGFAIGSASNAEIDAWGISHALGIAALRALDGVERALGMGSPG 122 Query: 109 -------------------------ENLQVIPRSALIDGRSIPED--------------- 128 ++ + A++DG P D Sbjct: 123 DSEIRGFDERCKYSGTWAYTKHSPQQHADGLHVGAILDG---PNDYISKALGTFEAPAVP 179 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM-RIA--HKKYPDYGFDSHVGYPTAKHQ 185 +P Q ++K D+ S+AAA+++AKVTRDRLM ++A H +Y YG++ + GY + H+ Sbjct: 180 MPAQVRTLVKADAQCASVAAAAVLAKVTRDRLMEQLARDHAEYARYGWERNKGYGSKAHR 239 Query: 186 QVIKEKGPSCIHRLTF 201 + I + GPS +HR+++ Sbjct: 240 EAIAQCGPSDLHRVSW 255 >gi|322489445|emb|CBZ24703.1| putative ribonuclease HII [Leishmania mexicana MHOM/GT/2001/U1103] Length = 268 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 69/252 (27%), Positives = 106/252 (42%), Gaps = 87/252 (34%) Query: 37 LAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITS----------------- 77 +AGPV VAA + + P + + DSK++ R E E + + Sbjct: 1 MAGPVGVAATLYRISATPVRYAVVDSKQMKENARAETLEAMCAELSDSGVEGFMGTTARD 60 Query: 78 ------------------SAIISISSASHQYIDKHNIHKATLDAI----------YHAVE 109 +A++ +S I++ NI ATL+ + Y+A+ Sbjct: 61 GACCLVRYQRRKPLQAVAAALVDVS-----VINERNILNATLEGMSAVCDAIVRSYNAMS 115 Query: 110 NLQVI-PRSA--LIDGRSIP---------EDLPCQAF----------------------A 135 L ++ P + LIDG +P + + QA Sbjct: 116 GLSILTPLTCAILIDGNRVPWTFLSGEERQRVRVQAVRKVEARKRIGIEYPALDGFGCTT 175 Query: 136 VIKGDSISLSIAAASIIAKVTRDRL-MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 V+KGD+ LSIAAASI+AKV RD + + H+ +P YGFD H GY TA H+ + GPS Sbjct: 176 VVKGDATLLSIAAASIVAKVARDAYAVSVMHRAFPQYGFDHHKGYCTAAHKAELARWGPS 235 Query: 195 CIHRLTFRPLRN 206 HRL + P++ Sbjct: 236 PFHRLDYAPVKG 247 >gi|15920736|ref|NP_376405.1| ribonuclease HII [Sulfolobus tokodaii str. 7] gi|74574695|sp|Q974Z3|RNH2_SULTO RecName: Full=Ribonuclease HII; Short=RNase HII gi|15621519|dbj|BAB65514.1| 208aa long hypothetical ribonuclease HII [Sulfolobus tokodaii str. 7] Length = 208 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 21/171 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS-SAI 80 V GIDE GRG+L GP++VA + + + + F G+ DSK+++ +RE+L++ I S S Sbjct: 3 VVGIDEAGRGSLIGPMIVAGVAIKNDRLKFLKNIGVKDSKQLTRNRREKLFDIICSYSEG 62 Query: 81 ISISSASHQYIDKHNI----HKATLDAIYHAVE------NLQVIPRSALIDGRSIPEDLP 130 +I S + ID N+ +KA + IY VE ++ + + +++ I L Sbjct: 63 FTIVKVSPEEIDSENLNELTYKAMIKIIYSLVEFKPIRISIDKVGNTKVVEQEII--KLG 120 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + V D + +AASIIAKV RD ++ KY D+G GYP+ Sbjct: 121 MEPNIVTNADVYFVEASAASIIAKVIRDNIIDTLKSKYGDFG----SGYPS 167 >gi|269219635|ref|ZP_06163489.1| ribonuclease HII [Actinomyces sp. oral taxon 848 str. F0332] gi|269210877|gb|EEZ77217.1| ribonuclease HII [Actinomyces sp. oral taxon 848 str. F0332] Length = 227 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/190 (34%), Positives = 97/190 (51%), Gaps = 14/190 (7%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DEVGRG+LAGPV V ++D + + P G+ DSK +S RE + + A+ ++ Sbjct: 28 IAGVDEVGRGSLAGPVSVGIALIDASTGDFPEGLRDSKAMSPAARERMAPLVREWAVDVA 87 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR--SIPED--------LPCQ 132 + A ID I A A A+ L P + L+DG+ ED LP Sbjct: 88 VGHAGPDVIDDVGIVAALRHAAKEALNGLSATPSAVLLDGKHNWWAEDSLFDVDPLLPQI 147 Query: 133 AFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +KGD+ IAAAS+ AKV RD LM + +P Y + + GY + H + + Sbjct: 148 PVRMEVKGDARCAVIAAASVAAKVERDGLMVVLDGCFPGYDWARNKGYASPSHIEGLARL 207 Query: 192 GPSCIHRLTF 201 GPS HR ++ Sbjct: 208 GPSDHHRKSW 217 >gi|317010006|gb|ADU80586.1| ribonuclease HII [Helicobacter pylori India7] Length = 204 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 94/188 (50%), Gaps = 11/188 (5%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L +KI + + Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCSEKTALEFLKMGLKDSKKLSKKKRFFLEDKIKTHGEMGF 63 Query: 83 -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138 + S ID + AI +EN + IDG + + E P +IK Sbjct: 64 FVVKKSANEIDSLGLGACLKLAIQEILENACSLANEIKIDGNTAFGLNERYP-NIQTIIK 122 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD IA AS++AK +DR MR H + +YG+D + GY T +H + I + G + HR Sbjct: 123 GDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAIIKLGVTPFHR 182 Query: 199 LTFRPLRN 206 +F L+N Sbjct: 183 HSF-TLKN 189 >gi|205355751|ref|ZP_03222521.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CG8421] gi|205346528|gb|EDZ33161.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CG8421] Length = 159 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 5/150 (3%) Query: 56 GINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP 115 G+ DSKK+S KKREELYE I ++ I + S + ID + + ++ + Sbjct: 14 GLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFKT-E 72 Query: 116 RSALIDGRSIPEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174 + L DG + +L IK D+ L ++AASI+AKV++DR+M K +P Y F+ Sbjct: 73 NNFLYDGNT---NLGINGIKTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPCYEFE 129 Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 + Y T H++ I + G +HR +F+ L Sbjct: 130 KNKAYGTKAHKEFIAKFGICKLHRKSFKLL 159 >gi|322379000|ref|ZP_08053403.1| ribonuclease HII [Helicobacter suis HS1] gi|322380765|ref|ZP_08054871.1| ribonuclease HII [Helicobacter suis HS5] gi|321146769|gb|EFX41563.1| ribonuclease HII [Helicobacter suis HS5] gi|321148492|gb|EFX42989.1| ribonuclease HII [Helicobacter suis HS1] Length = 194 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 89/186 (47%), Gaps = 10/186 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS-SAI 80 + GIDE GRG L G + VA + F G+ +SK++ +KR E ++I + Sbjct: 2 ILGIDEAGRGCLCGSLFVAGVGCTAEIAAFFNKQGLKESKQLKREKRFEFAKQIQEHREV 61 Query: 81 ISISSA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI--PEDLPCQAF-AV 136 +S+ A S ID + +AI V I L DG ++ + F A+ Sbjct: 62 LSLVVAKSALEIDTKGLSVCVQEAITQIVLRFPHILHVKL-DGNTLFHLHFSHLRYFEAI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA ASI+AK +D+ M K YP YGF H GY T +H++ I G Sbjct: 121 IKGDCQITQIAMASILAKAAKDKEMLALDKAYPAYGFVRHCGYGTQEHRKAITHLGYLKE 180 Query: 197 HRLTFR 202 HR +F+ Sbjct: 181 HRKSFK 186 >gi|229818328|ref|ZP_04448609.1| hypothetical protein BIFANG_03630 [Bifidobacterium angulatum DSM 20098] gi|229784198|gb|EEP20312.1| hypothetical protein BIFANG_03630 [Bifidobacterium angulatum DSM 20098] Length = 239 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 119/237 (50%), Gaps = 47/237 (19%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-------IPFGINDSKK 62 P +LE + ++ + G DEVGRG+LAGPV+V A + + +P G+ DSK Sbjct: 4 PTLDLEHTLADRQYDVIVGFDEVGRGSLAGPVMVGACAIRAQDVRDGAKEVPQGVADSKM 63 Query: 63 ISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ--------- 112 ++ +RE + +++ SA ++ +AS+ ID+ I A A A+ ++ Sbjct: 64 LTEHRREAIVDELKDWSAAWAVGAASNTEIDEWGISYALGVAALRALAEVERTLGIGDDG 123 Query: 113 ------VIPRS---ALIDGRSIPEDLPCQAFAV---------------IKGDSISLSIAA 148 V R+ A++DG P D +A +KGD ++AA Sbjct: 124 TAVIGGVKTRASVGAILDG---PNDYITKALNTFEAPVVPVPADVVTKVKGDQHCATVAA 180 Query: 149 ASIIAKVTRDRLM-RIAHK--KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 A++IAKVTRDRLM IAH +Y Y ++ + GY + H+ I + GP+ +HR++++ Sbjct: 181 AAVIAKVTRDRLMVSIAHSDPQYAPYEWEHNKGYGSKAHRAAIAQYGPTALHRISWK 237 >gi|77386118|gb|ABA77535.1| ribonuclease HII [Campylobacter jejuni] Length = 159 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 5/150 (3%) Query: 56 GINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP 115 G+ DSKK+S KKREELYE I ++ I + S + ID + + ++ + Sbjct: 14 GLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQIDALGLSTCLKTGLKLIKKHFKT-E 72 Query: 116 RSALIDGRSIPEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174 + L DG + +L IK D+ L ++AASI+AKV++DR+M K +P Y F+ Sbjct: 73 NNFLYDGNT---NLGINGIKTQIKADASILQVSAASILAKVSKDRVMNFLAKDFPCYEFE 129 Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 + Y T H+++I + G +HR +F+ L Sbjct: 130 KNKAYGTKAHKELIAKFGICKLHRKSFKLL 159 >gi|11498229|ref|NP_069455.1| ribonuclease HII (rnhB) [Archaeoglobus fulgidus DSM 4304] gi|7388077|sp|O29634|RNH2_ARCFU RecName: Full=Ribonuclease HII; Short=RNase HII gi|2650000|gb|AAB90620.1| ribonuclease HII (rnhB) [Archaeoglobus fulgidus DSM 4304] Length = 205 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 104/201 (51%), Gaps = 26/201 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIIL-DPNNI-PFGINDSKKISHKKREELYEKITSSAIISIS 84 AGIDE G+G + GP+VVA + D + + G+ DSKK+S +REEL E+I + Sbjct: 3 AGIDEAGKGCVIGPLVVAGVACSDEDRLRKLGVKDSKKLSQGRREELAEEIRKICRTEVL 62 Query: 85 SASHQYIDKHNIHKATLDAIY---HAVENLQVIPRSALIDG---------RSIPEDLPCQ 132 S + +D+ K T++ I +A L++ P A +D R + E + Sbjct: 63 KVSPENLDERMAAK-TINEILKECYAEIILRLKPEIAYVDSPDVIPERLSRELEEITGLR 121 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA-KHQQVIKE- 190 A K D +AAASIIAKV R+R + +K+ D+G GY + + ++V+KE Sbjct: 122 VVAEHKADEKYPLVAAASIIAKVEREREIERLKEKFGDFGS----GYASDPRTREVLKEW 177 Query: 191 ----KGPSCIHRLTFRPLRNL 207 + PSC+ R+ ++ + NL Sbjct: 178 IASGRIPSCV-RMRWKTVSNL 197 >gi|14278646|pdb|1I39|A Chain A, Rnase Hii From Archaeoglobus Fulgidus gi|14278647|pdb|1I3A|A Chain A, Rnase Hii From Archaeoglobus Fulgidus With Cobalt Hexammine Chloride Length = 225 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 100/200 (50%), Gaps = 24/200 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIIL-DPNNI-PFGINDSKKISHKKREELYEKITSSAIISIS 84 AGIDE G+G + GP+VVA + D + + G+ DSKK+S +REEL E+I + Sbjct: 23 AGIDEAGKGCVIGPLVVAGVACSDEDRLRKLGVKDSKKLSQGRREELAEEIRKICRTEVL 82 Query: 85 SASHQYIDKHNIHKATLDAIYHAVEN--LQVIPRSALIDG---------RSIPEDLPCQA 133 S + +D+ K + + L++ P A +D R + E + Sbjct: 83 KVSPENLDERMAAKTINEILKECYAEIILRLKPEIAYVDSPDVIPERLSRELEEITGLRV 142 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKE-- 190 A K D +AAASIIAKV R+R + +K+ D+G GY + + ++V+KE Sbjct: 143 VAEHKADEKYPLVAAASIIAKVEREREIERLKEKFGDFGS----GYASDPRTREVLKEWI 198 Query: 191 ---KGPSCIHRLTFRPLRNL 207 + PSC+ R+ ++ + NL Sbjct: 199 ASGRIPSCV-RMRWKTVSNL 217 >gi|1694784|emb|CAA60867.1| rnhB [Haemophilus influenzae] Length = 97 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 43/87 (49%), Positives = 59/87 (67%), Gaps = 1/87 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SIS 84 +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I A+ ++ Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKALAWALG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENL 111 A ID+ NI +A+L A+ AV++L Sbjct: 71 RAEADEIDEINILQASLLAMTRAVKSL 97 >gi|321159924|pdb|3P83|D Chain D, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus Fulgidus. gi|321159925|pdb|3P83|E Chain E, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus Fulgidus. gi|321159926|pdb|3P83|F Chain F, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus Fulgidus Length = 217 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 100/200 (50%), Gaps = 24/200 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIIL-DPNNI-PFGINDSKKISHKKREELYEKITSSAIISIS 84 AGIDE G+G + GP+VVA + D + + G+ DSKK+S +REEL E+I + Sbjct: 15 AGIDEAGKGCVIGPLVVAGVACSDEDRLRKLGVKDSKKLSQGRREELAEEIRKICRTEVL 74 Query: 85 SASHQYIDKHNIHKATLDAIYHAVEN--LQVIPRSALIDG---------RSIPEDLPCQA 133 S + +D+ K + + L++ P A +D R + E + Sbjct: 75 KVSPENLDERMAAKTINEILKECYAEIILRLKPEIAYVDSPDVIPERLSRELEEITGLRV 134 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKE-- 190 A K D +AAASIIAKV R+R + +K+ D+G GY + + ++V+KE Sbjct: 135 VAEHKADEKYPLVAAASIIAKVEREREIERLKEKFGDFG----SGYASDPRTREVLKEWI 190 Query: 191 ---KGPSCIHRLTFRPLRNL 207 + PSC+ R+ ++ + NL Sbjct: 191 ASGRIPSCV-RMRWKTVSNL 209 >gi|42601730|gb|AAS21614.1| ribonuclease HII [Leishmania panamensis] Length = 267 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 42/102 (41%), Positives = 55/102 (53%), Gaps = 9/102 (8%) Query: 113 VIPRSALIDGRSIPE---------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163 + P LIDG ++P + +I+GD SLSIAAAS +AKVTRD LM Sbjct: 156 IQPPLVLIDGHAVPGPSYDYFTSVSIGGDVQPIIEGDKRSLSIAAASCLAKVTRDELMNY 215 Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 YP YGF + GYP +H + + + G IHR T+RP R Sbjct: 216 IGALYPGYGFGENKGYPVEQHMKYVAKNGLCPIHRKTYRPCR 257 >gi|229821017|ref|YP_002882543.1| Ribonuclease H [Beutenbergia cavernae DSM 12333] gi|229566930|gb|ACQ80781.1| Ribonuclease H [Beutenbergia cavernae DSM 12333] Length = 273 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 67/201 (33%), Positives = 105/201 (52%), Gaps = 24/201 (11%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITS-SAIIS 82 VAG+DEVGRG LAGPV V +++ P G+ DSK ++ RE L + + + Sbjct: 35 VAGMDEVGRGCLAGPVSVGVVVVGPATGRTPAGLRDSKLLTPAARERLVPPVRRWAFASA 94 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGR----SIPE-DL----- 129 ++ AS ID+ I A A + A+ +L V+P + ++DG + P+ DL Sbjct: 95 VAHASAAEIDEIGIIAALRLAGHRALGSLAADGVVPGALILDGSHDWLTPPQPDLFEALE 154 Query: 130 -PCQAFAVI-------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 P A + K D +AAAS++AK RD LMR+ H +PD+ + S+ GY Sbjct: 155 PPVAPTAFVPPVRMRVKADLTCSVVAAASVLAKCERDGLMRVLHDDHPDFDWASNKGYAA 214 Query: 182 AKHQQVIKEKGPSCIHRLTFR 202 +H ++E GP+ +HR ++R Sbjct: 215 PEHLAALRELGPTVLHRRSWR 235 >gi|154345460|ref|XP_001568667.1| ribonuclease HII [Leishmania braziliensis MHOM/BR/75/M2904] gi|134066009|emb|CAM43794.1| putative ribonuclease HII [Leishmania braziliensis MHOM/BR/75/M2904] Length = 474 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/127 (38%), Positives = 65/127 (51%), Gaps = 13/127 (10%) Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE---------DLPCQAFAVIK 138 +Q K ++ K D Y E +Q P LIDG ++P + +I+ Sbjct: 342 YQVPHKLDLLKGATD--YFDFEPIQ--PPLVLIDGHAVPGPSYDYFTSVSIGGDVQPIIE 397 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD SLSIAAAS +AKVTRD LM YP YGF + GYP +H + + + G IHR Sbjct: 398 GDKRSLSIAAASCLAKVTRDELMNYIGALYPGYGFGENKGYPVEQHMKYVAKNGLCPIHR 457 Query: 199 LTFRPLR 205 T+RP R Sbjct: 458 KTYRPCR 464 Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 13/63 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NN---------IPFGINDSKKISHKKREELYEK 74 G DE GRG LAGPVV AA+ P NN F I DSK +S ++R+ ++ Sbjct: 137 GCDEAGRGPLAGPVVGAAVSRIPVSSFNNEFDQLYEAPEQFQIFDSKSVSERQRDLVFAM 196 Query: 75 ITS 77 IT Sbjct: 197 ITG 199 >gi|323359714|ref|YP_004226110.1| ribonuclease HII [Microbacterium testaceum StLB037] gi|323276085|dbj|BAJ76230.1| ribonuclease HII [Microbacterium testaceum StLB037] Length = 217 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 66/192 (34%), Positives = 102/192 (53%), Gaps = 18/192 (9%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 V DEVGRGALAGPV V A ++DP+ +P G+ DSK + +R E+ + ++A + Sbjct: 19 VIACDEVGRGALAGPVAVGAAVIDPSRSRKRVPTGLRDSKLVPEARRPEVAAR--AAAFV 76 Query: 82 ---SISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALI--DGR----SIPEDL 129 ++ AS + ID+ I +A A A+ +L+ V+P AL+ DG + + Sbjct: 77 QHSAVGWASSEEIDEIGIIRALGLAAVRAIADLRAHGVVPEDALVILDGNHDYITPAGES 136 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + ++K D S AAAS+IAKV RD +M H P YG+ + GY + H++ I Sbjct: 137 GLRVQPIVKADRDCASAAAASVIAKVARDTVMTYLHDDLPAYGWARNKGYASLDHREAIS 196 Query: 190 EKGPSCIHRLTF 201 G S HR ++ Sbjct: 197 AHGMSVHHRHSW 208 >gi|18042143|gb|AAL57850.1|AF454825_1 ribonuclease HII [Leishmania donovani] Length = 474 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 46/114 (40%), Positives = 60/114 (52%), Gaps = 15/114 (13%) Query: 105 YHAVENLQVIPRSALIDGRSIPEDLPCQAF-----------AVIKGDSISLSIAAASIIA 153 Y E +Q P LIDG ++P P + +I+GD SLSIAAAS +A Sbjct: 357 YFDFEPIQ--PPLVLIDGHAVPG--PSYDYFTSVRIGGDVQPIIEGDKRSLSIAAASCLA 412 Query: 154 KVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 KVTRD LM YP YGF + GYP +H + + + G IHR T+RP R + Sbjct: 413 KVTRDELMNYIDALYPGYGFRENKGYPVEQHMKYVTKNGLCPIHRKTYRPCRTV 466 Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 13/63 (20%) Query: 28 GIDEVGRGALAGPVVVAAI----ILDPNN---------IPFGINDSKKISHKKREELYEK 74 G DE GRG LAGPVV AA+ + NN F I DSK +S ++R+ ++ Sbjct: 137 GCDEAGRGPLAGPVVGAAVSRIPVFSFNNEFDQLYEAPEQFQIFDSKSVSERQRDLVFAM 196 Query: 75 ITS 77 IT Sbjct: 197 ITG 199 >gi|322490611|emb|CBZ25873.1| putative ribonuclease HII [Leishmania mexicana MHOM/GT/2001/U1103] Length = 474 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 45/112 (40%), Positives = 59/112 (52%), Gaps = 11/112 (9%) Query: 105 YHAVENLQVIPRSALIDGRSIPE---------DLPCQAFAVIKGDSISLSIAAASIIAKV 155 Y E +Q P LIDG ++P + +I+GD SLSIAAAS +AKV Sbjct: 357 YFDFEPIQ--PPLVLIDGHAVPGPSYDYFTSVRIGGDVQPIIEGDKRSLSIAAASCLAKV 414 Query: 156 TRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 TRD LM YP YGF + GYP +H + + + G IHR T+RP R + Sbjct: 415 TRDELMNYIDALYPGYGFRENKGYPVEQHMKYVAKNGLCPIHRKTYRPCRTV 466 Score = 39.7 bits (91), Expect = 0.28, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 13/63 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NN---------IPFGINDSKKISHKKREELYEK 74 G DE GRG LAGPVV AA+ P NN F I DSK +S ++R+ ++ Sbjct: 137 GCDEAGRGPLAGPVVGAAVSRIPVSSFNNEFDQLYEAPEQFQIFDSKSVSERQRDLVFAM 196 Query: 75 ITS 77 IT Sbjct: 197 ITG 199 >gi|146103491|ref|XP_001469573.1| ribonuclease HII [Leishmania infantum] gi|134073943|emb|CAM72682.1| putative ribonuclease HII [Leishmania infantum JPCM5] gi|322503389|emb|CBZ38474.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 474 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 45/112 (40%), Positives = 59/112 (52%), Gaps = 11/112 (9%) Query: 105 YHAVENLQVIPRSALIDGRSIPE---------DLPCQAFAVIKGDSISLSIAAASIIAKV 155 Y E +Q P LIDG ++P + +I+GD SLSIAAAS +AKV Sbjct: 357 YFDFEPIQ--PPLVLIDGHAVPGPSYDYFTSVRIGGDVQPIIEGDKRSLSIAAASCLAKV 414 Query: 156 TRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 TRD LM YP YGF + GYP +H + + + G IHR T+RP R + Sbjct: 415 TRDELMNYIDALYPGYGFRENKGYPVEQHMKYVAKNGLCPIHRKTYRPCRTV 466 Score = 39.7 bits (91), Expect = 0.28, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 13/63 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NN---------IPFGINDSKKISHKKREELYEK 74 G DE GRG LAGPVV AA+ P NN F I DSK +S ++R+ ++ Sbjct: 137 GCDEAGRGPLAGPVVGAAVSRIPVSSFNNEFDQLYEAPEQFQIFDSKSVSERQRDLVFAM 196 Query: 75 ITS 77 IT Sbjct: 197 ITG 199 >gi|41614859|ref|NP_963357.1| hypothetical protein NEQ063 [Nanoarchaeum equitans Kin4-M] gi|74579762|sp|Q74MH3|RNH2_NANEQ RecName: Full=Ribonuclease HII; Short=RNase HII gi|40068583|gb|AAR38918.1| NEQ063 [Nanoarchaeum equitans Kin4-M] Length = 200 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 87/171 (50%), Gaps = 15/171 (8%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSSAIISISS 85 G+DE GRG + GP+V+A +I D + G+ DSK ++ ++REEL+ +I ++++ Sbjct: 4 GGVDEAGRGPIIGPMVIALVIGDSGYLKELGVKDSKLLTKEQREELFNEIVKNSLVKYEI 63 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI-------- 137 S ID++N+++ + + +++ +ID PE+ + + Sbjct: 64 VSPSLIDRYNLNELEAKVTANLINSIEDEISHIVIDSPERPENYKLRILKYLKKRVKIIT 123 Query: 138 --KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 KG+ L +AAASI+AKV RDR + K G D GYP+ K + Sbjct: 124 KNKGEEDPL-VAAASIVAKVIRDREI---EKIKEQTGIDFGSGYPSDKRTR 170 >gi|224006103|ref|XP_002292012.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220972531|gb|EED90863.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 341 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 67/255 (26%), Positives = 118/255 (46%), Gaps = 63/255 (24%) Query: 14 LEAMVREKNMWPVAGIDEVG-RGALAGPVVVAAI-ILDPNN--IPFGI------------ 57 LE + + V G D+ G G +AGPVVVA+ +L P + +P + Sbjct: 85 LETDLHSRGYQFVIGSDDSGGAGCIAGPVVVASCCLLQPFSAVLPLDVSTKQSTAADKLL 144 Query: 58 -----------NDSKKISHKKREELYEKITSSA---IISISSASHQYIDKHNIHKATLDA 103 NDSK ++ ++R ++Y I + +S++ S Q ID N+ +AT A Sbjct: 145 SQSEMEIMAIVNDSKTLTPQQRIDVYNVICAHPDVFAVSVAQRSPQEIDDINLTRATQLA 204 Query: 104 IYHAVE------NLQVIPRSALIDGRSIPEDLPCQA-----------------------F 134 ++E NL A++DG+ P+ Q+ F Sbjct: 205 FAESIESLVENYNLPFDKIYAIVDGKVSPKLYALQSSDTESSMQQQQSTQQSQQAAPKRF 264 Query: 135 AV---IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +V GD+ ++A +SI+A+V+RD ++ H +YP YGFD ++GY + +H + + Sbjct: 265 SVRPYTNGDANVFTVALSSIVARVSRDAIIAELHDQYPSYGFDENLGYGSREHVEAVHRL 324 Query: 192 GP-SCIHRLTFRPLR 205 G + +HRL+F+ ++ Sbjct: 325 GALTGVHRLSFKQVK 339 >gi|157876514|ref|XP_001686603.1| ribonuclease HII [Leishmania major strain Friedlin] gi|16930798|gb|AAL32059.1|AF441859_1 ribonuclease HIIC [Leishmania major] gi|68129678|emb|CAJ08984.1| putative ribonuclease HII [Leishmania major strain Friedlin] Length = 474 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 45/112 (40%), Positives = 59/112 (52%), Gaps = 11/112 (9%) Query: 105 YHAVENLQVIPRSALIDGRSIPE---------DLPCQAFAVIKGDSISLSIAAASIIAKV 155 Y E +Q P LIDG ++P + +I+GD SLSIAAAS +AKV Sbjct: 357 YFDFEPIQ--PPLVLIDGHAVPGPSYDYFTSVRIGGDVQPIIEGDKRSLSIAAASCLAKV 414 Query: 156 TRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 TRD LM YP YGF + GYP +H + + + G IHR T+RP R + Sbjct: 415 TRDELMNYIDALYPGYGFRDNKGYPVEQHMKYVAKNGLCPIHRKTYRPCRTV 466 Score = 39.7 bits (91), Expect = 0.28, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 13/63 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NN---------IPFGINDSKKISHKKREELYEK 74 G DE GRG LAGPVV AA+ P NN F I DSK +S ++R+ ++ Sbjct: 137 GCDEAGRGPLAGPVVGAAVSRIPVSSFNNEFDQLYEAPEQFQIFDSKSVSERQRDLVFAM 196 Query: 75 ITS 77 IT Sbjct: 197 ITG 199 >gi|219851606|ref|YP_002466038.1| ribonuclease HII [Methanosphaerula palustris E1-9c] gi|219545865|gb|ACL16315.1| ribonuclease HII [Methanosphaerula palustris E1-9c] Length = 219 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 23/177 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAII-LDPNNIP-FGINDSKKISHKKREELYEKITSSAIISI 83 + G+DE G+GA+ GP+VVA + D + + G+ DSK+++ KRE+LY++I S ++ Sbjct: 6 ICGVDEAGKGAVLGPMVVAGVASRDVSAVAALGVRDSKQLTRLKREDLYDQIRSICTTTV 65 Query: 84 SSASHQYIDKHNIHKATLDAIY---HAVENLQVIPRSALIDGRSIPED------------ 128 + S ID AT++ I HA + P A +D + D Sbjct: 66 TVLSAADIDLAR-ESATMNMIVARGHAAVISTLTPTLAYVDACDVNADRYRETVTALLEP 124 Query: 129 -LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 CQ A + DS +AAASIIAKVTRDRL+ + G GYP+ ++ Sbjct: 125 AASCQVIAEHRADSTYPIVAAASIIAKVTRDRLVDALADECGQIGS----GYPSDRY 177 >gi|210135480|ref|YP_002301919.1| ribonuclease HII [Helicobacter pylori P12] gi|238056778|sp|B6JNG1|RNH2_HELP2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|210133448|gb|ACJ08439.1| ribonuclease hII [Helicobacter pylori P12] Length = 204 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 95/190 (50%), Gaps = 11/190 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG LAG + VA + + + G+ DSKK+S KKR L +KI + + Sbjct: 2 ILGIDEAGRGCLAGSLFVAGVACNDQTALELLKMGLKDSKKLSLKKRFFLEDKIKTHGKV 61 Query: 82 S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136 + S ID + AI +EN + + IDG + + + P + Sbjct: 62 KFFVVKKSANEIDNLGLGACLKLAIQEILENNRSLANEIKIDGNTAFGLNKRYP-NIQTI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK +DR M H + +YG+D + GY T +H + I + G + Sbjct: 121 IKGDETIAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAITKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRHSF-TLKN 189 >gi|269795662|ref|YP_003315117.1| ribonuclease HII [Sanguibacter keddieii DSM 10542] gi|269097847|gb|ACZ22283.1| ribonuclease HII [Sanguibacter keddieii DSM 10542] Length = 246 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 104/221 (47%), Gaps = 33/221 (14%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69 E+E + +AG+DEVGRGALAGPV V ++D + P G+ DSK ++ + R Sbjct: 14 LEVETGMLAAGARRLAGMDEVGRGALAGPVSVGVCVVDLSTGPCPVGLTDSKVLTARART 73 Query: 70 ELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA------LIDG 122 E I S ++ SAS ID I +A A A L + R+A L+DG Sbjct: 74 EYLPLIDDWSVATAVGSASAAEIDAVGIVRALRLAGQRA---LVAVARTAGPVDTVLLDG 130 Query: 123 R----SIPED-----------------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM 161 + PE L + +K D S+AAAS++AK RD M Sbjct: 131 SHDWLTEPEPDLLTMLEGEEVAAPDGYLAPRVQTRVKADLSCASVAAASVVAKCERDASM 190 Query: 162 RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 K +P YG+ + GY +A+H + E GPS HR+++R Sbjct: 191 VQLAKDHPHYGWIGNKGYGSAQHVAALGEHGPSPFHRVSWR 231 >gi|213029433|ref|ZP_03343880.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 92 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/80 (51%), Positives = 53/80 (66%), Gaps = 1/80 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LY++I A+ S+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLSLYDEIKEKALSWSLG 71 Query: 85 SASHQYIDKHNIHKATLDAI 104 A ID+ NI AT+ A+ Sbjct: 72 RAEAHEIDELNILHATMLAM 91 >gi|239944789|ref|ZP_04696726.1| ribonuclease HII [Streptomyces roseosporus NRRL 15998] gi|239991253|ref|ZP_04711917.1| ribonuclease HII [Streptomyces roseosporus NRRL 11379] Length = 197 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 43 VAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS--ISSASHQYIDKHNIHKAT 100 + A I P G+ DSK ++ ++R EL E + S + + + AS Q ID + A Sbjct: 1 MCAAITGLRRPPEGLTDSKLLTPRRRAEL-EPVLRSWVTACALGDASPQEIDDLGMTAAL 59 Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160 A A+E L V P + ++DG+ P + VIKGD +++AAAS+IAKV RDR+ Sbjct: 60 RLAAVRALEGLPVRPDAVILDGKHDYLGAPWKVRTVIKGDQSCIAVAAASVIAKVHRDRM 119 Query: 161 MR---IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 M A + + FD++ GYP+ H+ ++E+GP+ HRL++ L L Sbjct: 120 MAELGAASEDCGGFAFDANAGYPSPVHRAALEERGPTVHHRLSWSYLDAL 169 >gi|134104118|pdb|2DFH|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-212)-C Length = 221 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 89/182 (48%), Gaps = 38/182 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---- 77 +AGIDE GRG + GP+V+AA+++D N++P + DSKK++ K+RE+L+ +I Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62 Query: 78 -------SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID--------- 121 +I + + N K A+ +L+V P D Sbjct: 63 YVILELPPDVIGSREGTLNEFEVENFAK--------ALNSLKVKPDVIYADAADVDEERF 114 Query: 122 GRSIPEDLPCQAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 R + E L +A V K D I ++AASI+AKVTRDR + ++Y + G GY Sbjct: 115 ARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGY 170 Query: 180 PT 181 P+ Sbjct: 171 PS 172 >gi|57640740|ref|YP_183218.1| ribonuclease HII [Thermococcus kodakarensis KOD1] gi|7227922|sp|O74035|RNH2_PYRKO RecName: Full=Ribonuclease HII; Short=RNase HII gi|3551209|dbj|BAA32803.1| ribonuclease HII [Thermococcus kodakaraensis] gi|57159064|dbj|BAD84994.1| ribonuclease HII [Thermococcus kodakarensis KOD1] Length = 228 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 89/182 (48%), Gaps = 38/182 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---- 77 +AGIDE GRG + GP+V+AA+++D N++P + DSKK++ K+RE+L+ +I Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62 Query: 78 -------SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID--------- 121 +I + + N K A+ +L+V P D Sbjct: 63 YVILELPPDVIGSREGTLNEFEVENFAK--------ALNSLKVKPDVIYADAADVDEERF 114 Query: 122 GRSIPEDLPCQAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 R + E L +A V K D I ++AASI+AKVTRDR + ++Y + G GY Sbjct: 115 ARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGY 170 Query: 180 PT 181 P+ Sbjct: 171 PS 172 >gi|134104117|pdb|2DFF|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-204)-C Length = 213 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 38/182 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---- 77 +AGIDE GRG + GP+V+AA+++D N++P + DSKK++ K+RE+L+ +I Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62 Query: 78 -------SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED-- 128 +I + + N K A+ +L+V P D + E+ Sbjct: 63 YVILELPPDVIGSREGTLNEFEVENFAK--------ALNSLKVKPDVIYADAADVDEERF 114 Query: 129 ---------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 + A K D I ++AASI+AKVTRDR + ++Y + G GY Sbjct: 115 ARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGY 170 Query: 180 PT 181 P+ Sbjct: 171 PS 172 >gi|14278500|pdb|1IO2|A Chain A, Crystal Structure Of Type 2 Ribonuclease H From Hyperthermophilic Archaeon, Thermococcus Kodakaraensis Kod1 Length = 213 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 38/182 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---- 77 +AGIDE GRG + GP+V+AA+++D N++P + DSKK++ K+RE+L+ +I Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62 Query: 78 -------SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED-- 128 +I + + N K A+ +L+V P D + E+ Sbjct: 63 YVILELPPDVIGSREGTLNEFEVENFAK--------ALNSLKVKPDVIYADAADVDEERF 114 Query: 129 ---------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 + A K D I ++AASI+AKVTRDR + ++Y + G GY Sbjct: 115 ARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGY 170 Query: 180 PT 181 P+ Sbjct: 171 PS 172 >gi|284161145|ref|YP_003399768.1| ribonuclease HII [Archaeoglobus profundus DSM 5631] gi|284011142|gb|ADB57095.1| ribonuclease HII [Archaeoglobus profundus DSM 5631] Length = 211 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 19/171 (11%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII 81 +AGIDE G+G + GP+V+ ++ D + + G+ DSKK+ +KREELY I S + Sbjct: 2 IAGIDEAGKGPVIGPLVICGVLCDEETVEYLKSVGVKDSKKLDRRKREELYNIIKSLCKV 61 Query: 82 SISSASHQYIDKHNIHKATLDAIYHA-VENLQ-VIPRSALID---------GRSIPEDLP 130 + S + +++ + + + + A VE ++ ++P+ ID I E Sbjct: 62 KVLKISVEDLNRLMEYMSINEILKRAYVEIIRSLMPKVVYIDCPDINVERFKHEIEERTG 121 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + FA K D I ++ ASI+AKV RD + K Y D+G GYP+ Sbjct: 122 VEVFASHKADEIYPIVSIASIVAKVERDFEIDKLKKIYGDFG----SGYPS 168 >gi|254173516|ref|ZP_04880188.1| ribonuclease HII [Thermococcus sp. AM4] gi|214032208|gb|EEB73038.1| ribonuclease HII [Thermococcus sp. AM4] Length = 230 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 96/187 (51%), Gaps = 28/187 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS--- 78 +AGIDE GRG + GP+V+AA+++D + + G+ DSKK++ ++RE L+++I + Sbjct: 7 LAGIDEAGRGPVIGPMVIAAVVVDEDKLGNLEELGVKDSKKLTPRRRERLFDEIIAQLDD 66 Query: 79 -AIISISSASHQYID--KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 II + + ID K +++ ++ A+ +L+V P ID + E +A Sbjct: 67 YVIIELWP---EEIDSRKVTLNEFEVENFAKALNSLKVRPDVVYIDAADVKEGRFGEAVG 123 Query: 136 VI-----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + + D + ++AASI+AKV RDR + ++Y + G GYP+ Sbjct: 124 RLLSFKAEIVAEHRADDKFVPVSAASILAKVVRDRAIERLKREYGEIG----SGYPSDPR 179 Query: 185 QQVIKEK 191 + EK Sbjct: 180 TREFLEK 186 >gi|134104116|pdb|2DFE|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-200)-C Length = 209 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 38/182 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---- 77 +AGIDE GRG + GP+V+AA+++D N++P + DSKK++ K+RE+L+ +I Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62 Query: 78 -------SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED-- 128 +I + + N K A+ +L+V P D + E+ Sbjct: 63 YVILELPPDVIGSREGTLNEFEVENFAK--------ALNSLKVKPDVIYADAADVDEERF 114 Query: 129 ---------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 + A K D I ++AASI+AKVTRDR + ++Y + G GY Sbjct: 115 ARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGY 170 Query: 180 PT 181 P+ Sbjct: 171 PS 172 >gi|126178454|ref|YP_001046419.1| ribonuclease HII [Methanoculleus marisnigri JR1] gi|125861248|gb|ABN56437.1| RNase HII [Methanoculleus marisnigri JR1] Length = 205 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 100/203 (49%), Gaps = 31/203 (15%) Query: 29 IDEVGRGALAGPVVVAAI----ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 +DE G+G++ GP+VVAA+ I D +P I DSK + K+RE LYE + I+I Sbjct: 1 MDEAGKGSVLGPMVVAAVGCREIEDLATLP--IRDSKVLRPKQREALYEILFRDFSIAIV 58 Query: 85 SASHQYID--KHNIHKATLDAIYHAVENLQVIPRSALID---------GRSIPE--DLPC 131 + ID + + T A HA + + P A +D GR++ E D PC Sbjct: 59 TIDAAGIDDARSRMSMNTCVAELHAEALMSLQPEYAYVDACDVNAERYGRTVAELLDYPC 118 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH-----QQ 186 + A D+ + AAS++AKVTRDR +R ++Y G GYP+ + Sbjct: 119 EIVAEHHADARHKVVGAASVVAKVTRDRAIRELEQQYGAIG----SGYPSDPATIEFLRG 174 Query: 187 VIKEKG--PSCIHRLTFRPLRNL 207 I+ G P+C R +++ + NL Sbjct: 175 YIRSHGSPPACARR-SWKTVTNL 196 >gi|297571158|ref|YP_003696932.1| ribonuclease H [Arcanobacterium haemolyticum DSM 20595] gi|296931505|gb|ADH92313.1| Ribonuclease H [Arcanobacterium haemolyticum DSM 20595] Length = 224 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 16/193 (8%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI---PFGINDSKKISHKKREELYEKITSS-AII 81 +AG+DEVGRG++AGP V +++ + + P G+ DSK IS RE L E + + Sbjct: 24 LAGVDEVGRGSIAGPASVGIALVNTDTVDEFPVGLRDSKMISAHVRESLVEPVHEWVSAY 83 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIP-RSALIDGR--SIPEDLPCQAFAV-- 136 ++ AS Q +++ I A A A+E L L+DG D A A Sbjct: 84 AVGHASPQDVNEAGILGALRIAAARALEQLDGFEIAGVLLDGSHDWWSSDGLFDAGATLP 143 Query: 137 -------IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +KGD+ +AAAS++AKV RDR+M + + +P YGF+ + GY +A+H ++ Sbjct: 144 VLPVRMEVKGDARCAVVAAASVLAKVERDRIMVESAEAFPGYGFERNKGYASAEHIHGLE 203 Query: 190 EKGPSCIHRLTFR 202 G S HR ++ Sbjct: 204 TLGASAFHRTAWK 216 >gi|296129323|ref|YP_003636573.1| Ribonuclease H [Cellulomonas flavigena DSM 20109] gi|296021138|gb|ADG74374.1| Ribonuclease H [Cellulomonas flavigena DSM 20109] Length = 279 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 26/219 (11%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKK 67 PH E + + VAG+DEVGRG+LAGPV V +++D + P G+ DSK ++ Sbjct: 30 PHLRHERALLRTGLRYVAGMDEVGRGSLAGPVSVGVVVVDVGTRSAPRGVADSKLLTPAA 89 Query: 68 REELYEKITSSAII-SISSASHQYIDKHNIHKA-------TLDAIYHAVENLQVIPRSAL 119 R L + + ++ AS ID I A L ++ VE + + Sbjct: 90 RAALLPSLGRWGVARAVGHASPTEIDDRGIVAALRLAGTRALRSVLEVVEQVDAVVLDGS 149 Query: 120 IDGRSIPE---------------DLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRI 163 D + PE DL A + +K D ++AAAS++AK RD LM Sbjct: 150 HDWLTPPEPDLFGTQSELFAPSPDLRVPAVHLRVKADRSCATVAAASVLAKCERDALMVQ 209 Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +P+Y +D + GY + +H ++E GP+ +HR ++R Sbjct: 210 HAAAHPEYRWDENKGYASPEHVAALRELGPTPLHRRSWR 248 >gi|88191784|pdb|1X1P|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-197)-A(28-42) Length = 212 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 89/182 (48%), Gaps = 38/182 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---- 77 +AGIDE GRG + GP+V+AA+++D N++P + DSKK++ K+RE+L+ +I Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62 Query: 78 -------SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID--------- 121 +I + + N K A+ +L+V P D Sbjct: 63 YVILELPPDVIGSREGTLNEFEVENFAK--------ALNSLKVKPDVIYADAADVDEERF 114 Query: 122 GRSIPEDLPCQAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 R + E L +A V K D I ++AASI+AKVTRDR + ++Y + G GY Sbjct: 115 ARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGY 170 Query: 180 PT 181 P+ Sbjct: 171 PS 172 >gi|323452074|gb|EGB07949.1| hypothetical protein AURANDRAFT_6827 [Aureococcus anophagefferens] Length = 156 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 88/164 (53%), Gaps = 11/164 (6%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK-REELYEKI--TSSAIISIS 84 G+DEVGRG LAGPVV A L P + DSK+++ + RE +Y ++ T +++ Sbjct: 1 GVDEVGRGCLAGPVVTCACYLPPGAEIDDLTDSKQLATEDLREAVYARLLATPGLRFALA 60 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A +D+ NI +A L A+ A E L L G DL + KGD+ Sbjct: 61 KAEAPVVDELNILQANLQAMRTASEALC----DRLAAGGERGGDLE----VLDKGDASVS 112 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 +I+AAS+IAKVTRDR+M YP+Y + S+ P A ++++ Sbjct: 113 AISAASVIAKVTRDRIMNALAGDYPEYDWASNKQRPVAVFREIL 156 >gi|255994295|ref|ZP_05427430.1| ribonuclease HII [Eubacterium saphenum ATCC 49989] gi|255993008|gb|EEU03097.1| ribonuclease HII [Eubacterium saphenum ATCC 49989] Length = 283 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 50/130 (38%), Positives = 69/130 (53%), Gaps = 6/130 (4%) Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +EK T S II + +H D N V N I + L+D + +D+ Sbjct: 158 HEKFTLSRIIPNTEKTH---DDRNRDDGNSAKCSDGVLNKDEI--TLLVDAVKL-DDVGT 211 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++I+GD S SIAA+SI+AKV RD +M+ A + YP Y F S+ GY T +H + IK Sbjct: 212 PVHSIIRGDEKSYSIAASSIVAKVIRDEMMKKADEMYPGYDFKSNKGYGTKRHYEGIKLY 271 Query: 192 GPSCIHRLTF 201 G S IHR TF Sbjct: 272 GISDIHRKTF 281 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 1/149 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG+DEVGRG +AGPVV A + + ++ GI+DSKK++ R +L++KI A I I Sbjct: 32 AGMDEVGRGPIAGPVVSACVCMKADSEILGIDDSKKVTKAGRIKLFDKIIEDARAIGIGI 91 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 H ID+ NI AT A+ A+ ++ + R+ G + + +V + D++ L Sbjct: 92 VPHNIIDRINILNATKLAMRAALYDMLSVKRAVGSSGIILSYESLVNTLSVFESDALFLL 151 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFD 174 ++ K T R++ K + D D Sbjct: 152 NVSSLSHEKFTLSRIIPNTEKTHDDRNRD 180 >gi|307353890|ref|YP_003894941.1| ribonuclease HII [Methanoplanus petrolearius DSM 11571] gi|307157123|gb|ADN36503.1| ribonuclease HII [Methanoplanus petrolearius DSM 11571] Length = 212 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 55/203 (27%), Positives = 102/203 (50%), Gaps = 25/203 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDE G+G++ GP+V+ + + G DSK +S ++RE+ YE+I + + Sbjct: 2 ICGIDEAGKGSVLGPMVIGGVAGKDLSEFVKKGFADSKTLSPRRREQFYEEIVAEFKTTT 61 Query: 84 SSASHQYID--KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF------- 134 S ID + ++ + A HA ++P +A +D + E + Sbjct: 62 VVLSAAMIDELRSSMTMNEIVARSHARAITDLMPDTAYVDACDVNEVRYAETISGFLKND 121 Query: 135 -AVI---KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-----AKHQ 185 A++ K D + ++AASI+AKVTRDR++ ++ + G GYP+ A + Sbjct: 122 IAIVSKHKADDLYAVVSAASIVAKVTRDRMIEDLKSQWGNIG----SGYPSDPDTIAFLK 177 Query: 186 QVIKEKG-PSCIHRLTFRPLRNL 207 + I+E+G P I R++++ + N+ Sbjct: 178 RYIEERGEPPSIARMSWKTISNM 200 >gi|134045249|ref|YP_001096735.1| ribonuclease HII [Methanococcus maripaludis C5] gi|189043624|sp|A4FWE5|RNH2_METM5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|132662874|gb|ABO34520.1| RNase HII [Methanococcus maripaludis C5] Length = 239 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 105/218 (48%), Gaps = 36/218 (16%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI 75 E N + G+DE GRG + GP+V+A++ ++ ++P G+ DSK++S KKREELY KI Sbjct: 14 ESNGKIIVGLDEAGRGPVIGPMVIASVKINEKDLPRLDDLGLRDSKQLSKKKREELYTKI 73 Query: 76 TSSAIISISSASHQYIDKH----NIHKATLDAI----YHAVENLQVIPRSALIDGRSIPE 127 + + + + ID+ N++K L A H ++ + I S ID S E Sbjct: 74 SEICDVKKVVINPEKIDEQMEIINLNKIELGAFSKLANHFIKENENI--SIYIDACSSNE 131 Query: 128 DLPCQAF------------AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 F A K D ++AASIIAKVTRD ++ K + + G Sbjct: 132 QSFSNQFKAKLINKNVEIIAEHKADENYKIVSAASIIAKVTRDNVIEEYKKTFGEIG--- 188 Query: 176 HVGYPTA-KHQQVIK-----EKGPSCIHRLTFRPLRNL 207 GYP+ K ++ +K KG I R ++ +NL Sbjct: 189 -SGYPSDPKTKKFLKNYVHENKGLPKIARKSWATSKNL 225 >gi|320096209|ref|ZP_08027796.1| ribonuclease HII [Actinomyces sp. oral taxon 178 str. F0338] gi|319976857|gb|EFW08613.1| ribonuclease HII [Actinomyces sp. oral taxon 178 str. F0338] Length = 225 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 71/200 (35%), Positives = 103/200 (51%), Gaps = 25/200 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG+LAGPV V + P + P G+ DSK ++ K+RE L + A+ + Sbjct: 21 VAGVDEVGRGSLAGPVAVGVALTSPGAADPPAGLVDSKALTAKRREALAPAVRQWALDCA 80 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQV---IPRSALIDGR----SIPEDL------ 129 + A ID+ I A A A++ L +P + ++DG ++PEDL Sbjct: 81 VGWAGPDEIDQWGIVAALRLAGLRALDELAGRGRVPGAVVLDGSHNWLAMPEDLLGGLGG 140 Query: 130 -------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 P A +K D+ +AAAS+IAKV RDRLM A P Y + + GY +A Sbjct: 141 PDYPPPCPAPIRARVKADASCAVVAAASVIAKVERDRLM--AELDDPGYEWSRNKGYASA 198 Query: 183 KHQQVIKEKGPSCIHRLTFR 202 H + E GPS HR +++ Sbjct: 199 AHIAALAELGPSAHHRRSWK 218 >gi|312133301|ref|YP_004000640.1| rnhb [Bifidobacterium longum subsp. longum BBMN68] gi|311772513|gb|ADQ02001.1| RnhB [Bifidobacterium longum subsp. longum BBMN68] Length = 275 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 74/273 (27%), Positives = 125/273 (45%), Gaps = 85/273 (31%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAII------LDPNN--------- 52 P +LE ++ + +AG DEVGRGALAGPV+V AAI LD ++ Sbjct: 4 PTLDLERILAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63 Query: 53 --IPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKA---------- 99 +P G+ DSK ++ +RE +++++ A ++ AS+ ID+ I A Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123 Query: 100 -------------------------------TLDAIYHAVENLQVIPRSA-LIDGRS--- 124 ++I + E+++ +P+ A ++DG S Sbjct: 124 QVERELGLRLGGGLTAKKAAGEIVEGRPGDSVGESIGNCGESVRALPKVAGILDGPSDYI 183 Query: 125 -------------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM---RIAHKKY 168 IP D+ + +KGD ++A A++IAKVTRDRLM ++ +Y Sbjct: 184 TKALNTFDAPDVPIPADITTK----VKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRY 239 Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 Y + + GY +A H+ I E GP+ +HR+++ Sbjct: 240 AAYEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 272 >gi|291456102|ref|ZP_06595492.1| ribonuclease HII [Bifidobacterium breve DSM 20213] gi|291382511|gb|EFE90029.1| ribonuclease HII [Bifidobacterium breve DSM 20213] Length = 286 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 72/279 (25%), Positives = 113/279 (40%), Gaps = 87/279 (31%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVA------------------------- 44 P +LE + + + G DEVGRGALAGPV+V Sbjct: 5 PTLDLERSLASQGYDLIVGFDEVGRGALAGPVMVGCAAIWARDLKPDADGELAQAAGSAA 64 Query: 45 -----------AIILDPN-----NIPFGINDSKKISHKKREELYEKITS-SAIISISSAS 87 A ++ PN ++P G+ DSK ++ +RE +++++ S A ++ +S Sbjct: 65 SSRVSGDNGTDAGVITPNPAPYLSVPAGVADSKMLTEHRREAIFDELCSWCAAYAVGQSS 124 Query: 88 HQYIDKHNIHKA----TLDAIYHAVENLQV-----IPRSA----LIDGRSIPEDLPCQAF 134 + ID+ I A L A+ +L V PR +GR +P P Sbjct: 125 NAEIDEWGITYALGVAALRALNQVERDLGVGSEFGSPREGSCLTATEGRPLPSRRPITIG 184 Query: 135 AVIKGDSISLSIAAASIIA-----------------------------KVTRDRLM-RIA 164 A++ G S ++ A + A KVTRDRLM IA Sbjct: 185 AILDGPSDYITKALNTFDAPDVPIPADVTTKVKGDQHCATVATAAVIAKVTRDRLMVSIA 244 Query: 165 HK--KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +Y Y +D + GY +A H+ I E GP+ +HR ++ Sbjct: 245 QGNPRYAAYEWDHNKGYGSAAHRAAIAEYGPTPLHRTSW 283 >gi|313609088|gb|EFR84798.1| ribonuclease HII [Listeria monocytogenes FSL F2-208] Length = 142 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 15/100 (15%) Query: 9 RPHFELEAMVR---------EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIP 54 R +E EA +R EK+++ +AG+DEVGRG LAGPVV AA+IL + Sbjct: 42 RRKWEKEAQLRNKLEEMKQYEKDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSV 101 Query: 55 FGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDK 93 GINDSK++S KR+ LYE I + AI + + H ID+ Sbjct: 102 VGINDSKQLSEAKRDALYETIQTEAIAVGVGIIEHNVIDQ 141 >gi|145590574|ref|YP_001152576.1| ribonuclease HII [Pyrobaculum arsenaticum DSM 13514] gi|189043645|sp|A4WHQ7|RNH2_PYRAR RecName: Full=Ribonuclease HII; Short=RNase HII gi|145282342|gb|ABP49924.1| RNase HII [Pyrobaculum arsenaticum DSM 13514] Length = 198 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 92/177 (51%), Gaps = 24/177 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSSAIISIS 84 V GIDE GRG + GP+V+A ++ D + G+ DSK +S + RE LY KI A+ Sbjct: 5 VGGIDEAGRGPVVGPLVLAIVVGDSEALSKIGVRDSKSLSPRAREVLYGKILEMAVCVNY 64 Query: 85 SASHQY-IDKHNIHKATLDAI--YHAVENLQVIPR------------SALIDGRSIPEDL 129 + Y ID H + + L+A+ +A + +++ P + DG S Sbjct: 65 AVVEPYEIDLH-VSRGMLNALEMKYAAKLMELCPADLYYVDSPDVKAARFGDGLSFLTGR 123 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + ++ KG+++ +AAASI+AKV RDRL+ + K+ D+G GYP+ + + Sbjct: 124 --RVVSLHKGEAVP-QVAAASIVAKVVRDRLVEMLRKEVGDFG----SGYPSDRKTR 173 >gi|329571609|gb|EGG53290.1| putative ribonuclease HII [Enterococcus faecalis TX1467] Length = 137 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 41/55 (74%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KKRE LY +I A+ Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLYNQIQEQAV 128 >gi|240103148|ref|YP_002959457.1| ribonuclease HII [Thermococcus gammatolerans EJ3] gi|239910702|gb|ACS33593.1| Ribonuclease HII (rnhB) [Thermococcus gammatolerans EJ3] Length = 226 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 90/177 (50%), Gaps = 28/177 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS--- 78 +AGIDE GRG + GP+V+AA+++D + G+ DSKK++ +RE L+++I + Sbjct: 5 IAGIDEAGRGPVIGPMVIAAVVVDEEKLKSLEELGVRDSKKLTPGRRERLFDEIIAQLDD 64 Query: 79 -AIISISSASHQYIDKHNI--HKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 II + + ID + ++ ++ A+ +L+V P ID + E +A Sbjct: 65 YVIIELWP---EEIDSREVTLNEFEVENFSKALNSLKVKPDVVYIDAADVKEGRFGEAIG 121 Query: 136 VI-----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + + D + ++AASI+AKV RDR + ++Y + G GYP+ Sbjct: 122 KLLKFKAEIVAEHRADDKFVPVSAASILAKVVRDRAIEKLKEEYGEIG----SGYPS 174 >gi|88602504|ref|YP_502682.1| ribonuclease HII [Methanospirillum hungatei JF-1] gi|115305550|sp|Q2FP80|RNH2_METHJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|88187966|gb|ABD40963.1| RNase HII [Methanospirillum hungatei JF-1] Length = 212 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 97/204 (47%), Gaps = 27/204 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAI-ILDPNN-IPFGINDSKKISHKKREELYEKITSSAIISI 83 + G+DE G+G++ GP+VVAA+ D ++ I G+ DSKK+S K RE++ I + SI Sbjct: 2 ICGVDEAGKGSVLGPMVVAAVGCTDMDDLIALGVADSKKLSSKSREKISADIKAQFPFSI 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIP---RSALIDGRSIPEDL----------- 129 + ID+ T++ I +IP A +D + E+ Sbjct: 62 VIRTAHDIDELR-RTMTMNEIVARSHAEALIPLNCTCAYVDACDVSEERYEETVSSFSPP 120 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP------TAK 183 C A K DS+ ++AASIIAKV RDR++ K+Y D G GYP T Sbjct: 121 DCTIVARHKADSLFPPVSAASIIAKVERDRIIEELSKEYGDIG----SGYPSDPVTITYL 176 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 + + P I R ++ ++NL Sbjct: 177 TKYIRHHNQPPVIARSSWETVKNL 200 >gi|320532025|ref|ZP_08032917.1| ribonuclease HII [Actinomyces sp. oral taxon 171 str. F0337] gi|320135759|gb|EFW27815.1| ribonuclease HII [Actinomyces sp. oral taxon 171 str. F0337] Length = 240 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/209 (30%), Positives = 96/209 (45%), Gaps = 35/209 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISHKKREELYEKITSSAII- 81 V G+DEVGRGALAGPV V I+ + P G+ DSK+++ + R L + + S + Sbjct: 24 VGGLDEVGRGALAGPVSVGLAIVARRTDDGFPEGLADSKQLTARARRGLVDPVRSWLVDH 83 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQ-------VIPRSALIDGRSIP-------- 126 +++ AS ID+ I A A A++ + +I + D + P Sbjct: 84 AVAHASPAEIDERGIVGALRMAGLRALQQVADRGHAPGIIILDGVADWLTAPQPDLLTAL 143 Query: 127 EDLPCQAFAV--------------IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 E P FA +K D+ +AAASI+AKV RD LM P YG Sbjct: 144 EGAPPFRFAPEPVAVPSTPPVLMEVKADARCAVVAAASILAKVERDALM--VDLDDPGYG 201 Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + S+ GY + H + + G S HR ++ Sbjct: 202 WASNKGYASPAHIKGLSALGASDQHRRSW 230 >gi|218887966|ref|YP_002437287.1| ribonuclease H [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758920|gb|ACL09819.1| Ribonuclease H [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 292 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 46/71 (64%) Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 AV+ GD++ +++AASI+AK RD+LM +++P YG H GY TA+H I E GP Sbjct: 211 AVVGGDALVPAVSAASILAKTFRDQLMTALDRRFPHYGLAVHKGYGTAEHMAAIAEHGPC 270 Query: 195 CIHRLTFRPLR 205 HR TFR +R Sbjct: 271 PQHRATFRGVR 281 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/99 (40%), Positives = 56/99 (56%), Gaps = 11/99 (11%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN--------IP--FGINDSKKISHKKREELYEK 74 P GIDE GRG LAGPVV AA+IL P+ +P G+ DSKK++ KRE L + Sbjct: 17 PYVGIDEAGRGCLAGPVVAAAVILPPHADAATLADLLPDLAGLTDSKKLTAAKREALAPR 76 Query: 75 ITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQ 112 I A+ + + I++ NI +AT A++ AV L+ Sbjct: 77 IRQHAVAWGLGVVWPRDIERINILQATFHAMWRAVRFLR 115 >gi|18312482|ref|NP_559149.1| ribonuclease HII [Pyrobaculum aerophilum str. IM2] gi|74564756|sp|Q8ZXL6|RNH2_PYRAE RecName: Full=Ribonuclease HII; Short=RNase HII gi|18159942|gb|AAL63331.1| ribonuclease HII (rnhB) [Pyrobaculum aerophilum str. IM2] Length = 212 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 96/178 (53%), Gaps = 36/178 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITS-SAIISI 83 + GIDE GRG + GP+V+A ++ + ++ I G+ DSK++S RE +YEKI +A ++ Sbjct: 2 IGGIDEAGRGPVIGPMVIAIVVGESDDMIKIGVRDSKRLSPGAREAVYEKILRVAACVNY 61 Query: 84 SSASHQYIDKHNIHKATLDAI---------------YHAVENLQVIPR---SALI--DGR 123 ID + + + L+A+ Y+ V++ V P+ S L+ G+ Sbjct: 62 VVIEPAEIDAY-VSRGMLNALELKYTAQLINLCPAEYYYVDSPDVNPKRYESGLVFATGK 120 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + A+ KG+++ +AAASI+AKV RDRL+++ K+ D+G GYP+ Sbjct: 121 RV--------IALHKGEAVP-QVAAASIVAKVVRDRLIQLLKKEVGDFGS----GYPS 165 >gi|14591420|ref|NP_143500.1| ribonuclease HII [Pyrococcus horikoshii OT3] gi|7227917|sp|O59351|RNH2_PYRHO RecName: Full=Ribonuclease HII; Short=RNase HII gi|50513813|pdb|1UAX|A Chain A, Crystal Structure Of The Ribonuclease H2 From Pyrococcus Horikoshii Ot3 gi|50513814|pdb|1UAX|B Chain B, Crystal Structure Of The Ribonuclease H2 From Pyrococcus Horikoshii Ot3 gi|3258079|dbj|BAA30762.1| 220aa long hypothetical ribonuclease H II [Pyrococcus horikoshii OT3] Length = 220 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 93/176 (52%), Gaps = 26/176 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 VAG+DE GRG + GP+V+ ++D NI G+ DSK+++ +RE+L+ K+ I+ Sbjct: 3 VAGVDEAGRGPVIGPLVIGVAVIDEKNIERLRDIGVKDSKQLTPGQREKLFSKLID--IL 60 Query: 82 S---ISSASHQYIDK--HNIHKATLDAIYHAVENLQVIPRSALIDGRS---------IPE 127 + + + ID+ H++++ + A+ +L++ P+ +D I Sbjct: 61 DDYYVLLVTPKEIDERHHSMNELEAEKFVVALNSLRIKPQKIYVDSADVDPKRFASLIKA 120 Query: 128 DLPCQAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 L +A + K D+ ++AASIIAKVTRDR + +KY ++G GYP+ Sbjct: 121 GLKYEATVIAEHKADAKYEIVSAASIIAKVTRDREIEKLKQKYGEFG----SGYPS 172 >gi|154151483|ref|YP_001405101.1| ribonuclease HII [Candidatus Methanoregula boonei 6A8] gi|166226624|sp|A7I9P7|RNH2_METB6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|154000035|gb|ABS56458.1| ribonuclease HII [Methanoregula boonei 6A8] Length = 213 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 19/171 (11%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITSSAIISI 83 + G+DE G+G++ GP+V+A + + + FG+ DSK++S +RE L+ I ++ Sbjct: 2 ICGVDEAGKGSVLGPMVIAGVGVGSTEMIDGFGLRDSKQLSPSERERLFVLIKKKCKVAT 61 Query: 84 SSASHQYID--KHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-----PEDL------P 130 S ID + + T A HAV Q+ P A +D + E + P Sbjct: 62 VVISAAEIDAFRREMTLNTCVARAHAVVIAQLAPEIAYVDACDVNPFRYAETVRGYLSSP 121 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 C+ + DS ++AASI+AKVTRDR + KKY G GYP+ Sbjct: 122 CEIVSEHHADSTYPVVSAASIVAKVTRDREIAKLAKKYGQIG----SGYPS 168 >gi|18978153|ref|NP_579510.1| ribonuclease HII [Pyrococcus furiosus DSM 3638] gi|24638181|sp|Q8U036|RNH2_PYRFU RecName: Full=Ribonuclease HII; Short=RNase HII gi|18893958|gb|AAL81905.1| RNaseH II [Pyrococcus furiosus DSM 3638] Length = 224 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 91/178 (51%), Gaps = 30/178 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA-I 80 + GIDE GRG GP+VVA +++D NI G+ DSK+++ +R+ L+ +ITS A Sbjct: 3 IGGIDEAGRGPAIGPLVVATVVVDEKNIEKLRNIGVKDSKQLTPHERKNLFSQITSIADD 62 Query: 81 ISISSASHQYIDKHN--IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI- 137 I S + ID + +++ ++ A+ +LQ+ P ALI + D+ FA + Sbjct: 63 YKIVIVSPEEIDNRSGTMNELEVEKFALALNSLQIKP--ALIYADAA--DVDANRFASLI 118 Query: 138 --------------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K D+ ++AASI+AKV RD + K+Y D+G GYP+ Sbjct: 119 ERRLNYKAKIIAEHKADAKYPVVSAASILAKVVRDEEIEKLKKQYGDFG----SGYPS 172 >gi|290769753|gb|ADD61528.1| putative protein [uncultured organism] Length = 279 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 73/277 (26%), Positives = 124/277 (44%), Gaps = 89/277 (32%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAII------LDPNN--------- 52 P +LE + + +AG DEVGRGALAGPV+V AAI LD ++ Sbjct: 4 PTLDLERSLAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63 Query: 53 --IPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKA---------- 99 +P G+ DSK ++ +RE +++++ A ++ AS+ ID+ I A Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123 Query: 100 -----------------------------------TLDAIYHAVENLQVIPR-SALIDGR 123 ++I + E+++ +P+ + ++DG Sbjct: 124 QVERELGLRLGGESTIKKASGESAGKIVEGRPGDSVGESIGNCGESVRALPKVAGILDGP 183 Query: 124 S----------------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM---RIA 164 S IP D+ + +KGD ++A A++IAKVTRDRLM + Sbjct: 184 SDYITKALNTFDAPDVPIPADITTK----VKGDQHCATVATAAVIAKVTRDRLMVDLAQS 239 Query: 165 HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + +Y Y + + GY +A H+ I E GP+ +HR+++ Sbjct: 240 NPRYAAYEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 276 >gi|15645936|ref|NP_208115.1| ribonuclease HII [Helicobacter pylori 26695] gi|2500560|sp|P56121|RNH2_HELPY RecName: Full=Ribonuclease HII; Short=RNase HII gi|2314491|gb|AAD08367.1| ribonuclease HII (rnhB) [Helicobacter pylori 26695] Length = 209 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 11/188 (5%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG LAG + VA + + + G+ DSKK+S KKR L KI + + Sbjct: 9 GIDEAGRGCLAGSLFVAGVACNEKTALEFLKMGLKDSKKLSLKKRFFLEYKIKTHGEVGF 68 Query: 83 -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138 + S ID + A+ +EN + IDG + + + P +IK Sbjct: 69 FVVKKSANEIDSLGLGACLKLAVQEILENGCSLVDEIKIDGNTAFGLNKRYP-HIQTIIK 127 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD IA AS++AK +DR M H + +YG+D + GY T +H + I + G + HR Sbjct: 128 GDETIAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHR 187 Query: 199 LTFRPLRN 206 +F L+N Sbjct: 188 HSF-TLKN 194 >gi|154333788|ref|XP_001563149.1| ribonuclease hii [Leishmania braziliensis MHOM/BR/75/M2904] gi|134060161|emb|CAM45568.1| putative ribonuclease HII [Leishmania braziliensis MHOM/BR/75/M2904] Length = 255 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 104/246 (42%), Gaps = 77/246 (31%) Query: 37 LAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSS---------------- 78 +AGPV VAA + + P + + DSK++ R E E + + Sbjct: 1 MAGPVSVAATLYRVSATPVRYTVGDSKRMKESARAETLEAMCAELSDAGIKGFLETTMRD 60 Query: 79 --------------AIISISSASHQYIDKHNIHKATLDAI----------YHAVENLQVI 114 +S + I NI ATL+ + Y+AV LQ++ Sbjct: 61 GACCVVRYQQRQPLQAVSAVLVDIEVIHGRNILNATLEGMSAVCNTIVRSYNAVRGLQIL 120 Query: 115 -PRSA--LIDGRSIP---------EDLPCQAF----------------------AVIKGD 140 P + LIDG +P + + QA AVIKGD Sbjct: 121 TPLTCAILIDGNRVPWTFLSSEERQQVRMQAVKNVEARKRIGVDYPVLDGFGCTAVIKGD 180 Query: 141 SISLSIAAASIIAKVTRDR-LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 + LSIAAAS++AKV RD +M + H+ +P YGFD H GY TA H+ + GPS HR+ Sbjct: 181 ATVLSIAAASVVAKVARDAYVMTVMHRAFPHYGFDYHKGYCTAAHKMELARWGPSRFHRV 240 Query: 200 TFRPLR 205 + P++ Sbjct: 241 DYAPVK 246 >gi|322688522|ref|YP_004208256.1| ribonuclease HII [Bifidobacterium longum subsp. infantis 157F] gi|320459858|dbj|BAJ70478.1| ribonuclease HII [Bifidobacterium longum subsp. infantis 157F] Length = 279 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 74/277 (26%), Positives = 126/277 (45%), Gaps = 89/277 (32%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAII------LDPNN--------- 52 P +LE ++ + +AG DEVGRGALAGPV+V AAI LD ++ Sbjct: 4 PTLDLERILAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63 Query: 53 --IPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNI------------- 96 +P G+ DSK ++ +RE +++++ A ++ AS+ ID+ I Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNAEIDEWGITYALGVAALRALS 123 Query: 97 ----------------HKATLDAIYHAVE----------------NLQVIPR-SALIDGR 123 KA+ ++ VE +++ +P+ + ++DG Sbjct: 124 QVERELGLRLGGESTIKKASGESAGEIVEGRPGGSVGEFIGNCGGSVRALPKVAGILDGP 183 Query: 124 S----------------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM---RIA 164 S IP D+ + +KGD ++A A++IAKVTRDRLM + Sbjct: 184 SDYITKALNTFDAPDVPIPADITTK----VKGDQHCATVATAAVIAKVTRDRLMVDLAQS 239 Query: 165 HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + +Y Y + + GY +A H+ I E GP+ +HR+++ Sbjct: 240 NPRYAAYEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 276 >gi|14520734|ref|NP_126209.1| ribonuclease HII [Pyrococcus abyssi GE5] gi|11387114|sp|Q9V1A9|RNH2_PYRAB RecName: Full=Ribonuclease HII; Short=RNase HII gi|5457950|emb|CAB49440.1| rnhB ribonuclease HII [Pyrococcus abyssi GE5] Length = 224 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 91/174 (52%), Gaps = 22/174 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-I 80 VAG DE GRG + GP+V+ A +++ + I G+ DSK+++ +RE+L+++I Sbjct: 3 VAGADEAGRGPVIGPLVIVAAVVEEDKIRSLTKLGVKDSKQLTPAQREKLFDEIVKVLDD 62 Query: 81 ISISSASHQYID--KHNIHKATLDAIYHAVENLQVIPRSALID---------GRSIPEDL 129 S+ S Q ID K ++++ ++ A+ +L+V P ID +I L Sbjct: 63 YSVVIVSPQDIDGRKGSMNELEVENFVKALNSLKVKPEVIYIDSADVKAERFAENIRSRL 122 Query: 130 PCQAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 +A V K D+ ++AASI+AKV RDR + +Y D+G GYP+ Sbjct: 123 AYEAKVVAEHKADAKYEIVSAASILAKVIRDREIEKLKAEYGDFG----SGYPS 172 >gi|257456662|ref|ZP_05621855.1| ribonuclease HII [Treponema vincentii ATCC 35580] gi|257445929|gb|EEV20979.1| ribonuclease HII [Treponema vincentii ATCC 35580] Length = 165 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 76/160 (47%), Gaps = 20/160 (12%) Query: 60 SKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR-- 116 KK+S K+RE I A+ I+S IDK NI +ATL A+ A + L R Sbjct: 3 QKKLSPKRRETARAAILEGALYWHIASMPPDLIDKINILQATLAAMKEAFDRLFARYRRD 62 Query: 117 ------------SALIDGRSIPE---DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM 161 + ++DG +P+ D A K D + AASI+AK RDR M Sbjct: 63 SIGKTADIEKSLTVIVDGNQLPDIHGDFNLTAEP--KADGRYPCVMAASILAKTERDRCM 120 Query: 162 RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 HK+YP Y +D H GY T H+ +I+ G S I R +F Sbjct: 121 MEYHKQYPLYRYDLHKGYGTKLHRSLIEVYGASPIQRHSF 160 >gi|256824957|ref|YP_003148917.1| ribonuclease HII [Kytococcus sedentarius DSM 20547] gi|256688350|gb|ACV06152.1| ribonuclease HII [Kytococcus sedentarius DSM 20547] Length = 252 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/195 (30%), Positives = 87/195 (44%), Gaps = 18/195 (9%) Query: 26 VAGIDEVGRGAL--AGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82 VAG+DEVGRGAL V V + P G+ DSK +S +RE L +++ + Sbjct: 35 VAGMDEVGRGALAGPVSVGVVVVDAAVGTAPVGVRDSKDLSAARREGLVPQLSRWGVARG 94 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR--SIPEDLPCQAFAV---- 136 + A + ID H I A A A+ V L+DG + + L F + Sbjct: 95 VGHAGPEEIDAHGIMAALRMAGRRALAAAGVEVDVVLLDGNHDWLTDPLRSGLFGLQGVA 154 Query: 137 -------IKGDSISLSIAAASIIAKVTRDRLMR--IAHKKYPDYGFDSHVGYPTAKHQQV 187 K D S+AAAS++AKV RD +M YG++ + GY H+ Sbjct: 155 GPAVVTRTKADRTCSSVAAASVLAKVERDGIMTDLAGAPGCAAYGWERNKGYAAGDHRAA 214 Query: 188 IKEKGPSCIHRLTFR 202 + GPS HR ++R Sbjct: 215 LGSLGPSVHHRRSWR 229 >gi|23464878|ref|NP_695481.1| ribonuclease HII [Bifidobacterium longum NCC2705] gi|23325467|gb|AAN24117.1| probable ribonuclease HII [Bifidobacterium longum NCC2705] gi|291517371|emb|CBK70987.1| RNase HII [Bifidobacterium longum subsp. longum F8] Length = 279 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 74/277 (26%), Positives = 126/277 (45%), Gaps = 89/277 (32%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAII------LDPNN--------- 52 P +LE ++ + +AG DEVGRGALAGPV+V AAI LD ++ Sbjct: 4 PTLDLERILAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63 Query: 53 --IPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNI------------- 96 +P G+ DSK ++ +RE +++++ A ++ AS+ ID+ I Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNAEIDEWGITYALGVAALRALS 123 Query: 97 ----------------HKATLDAIYHAVE----------------NLQVIPR-SALIDGR 123 KA+ ++ VE +++ +P+ + ++DG Sbjct: 124 QVERELGLRLGGESTIKKASGESAGEIVEGRPGGSVGESIGNCGGSVRALPKVAGILDGP 183 Query: 124 S----------------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM---RIA 164 S IP D+ + +KGD ++A A++IAKVTRDRLM + Sbjct: 184 SDYITKALNTFDAPDVPIPADITTK----VKGDQHCATVATAAVIAKVTRDRLMVDLAQS 239 Query: 165 HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + +Y Y + + GY +A H+ I E GP+ +HR+++ Sbjct: 240 NPRYAAYEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 276 >gi|150402543|ref|YP_001329837.1| ribonuclease HII [Methanococcus maripaludis C7] gi|189043625|sp|A6VGW0|RNH2_METM7 RecName: Full=Ribonuclease HII; Short=RNase HII gi|150033573|gb|ABR65686.1| ribonuclease HII [Methanococcus maripaludis C7] Length = 239 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 65/212 (30%), Positives = 103/212 (48%), Gaps = 36/212 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + G+DE GRG + GP+V+A++ ++ N++P G+ DSK+++ KKREELY KI+ + Sbjct: 20 IVGLDEAGRGPVIGPMVIASVKINENDLPKLHDLGLKDSKQLTKKKREELYIKISEICDV 79 Query: 82 SISSASHQYIDKH----NIHKATLDAI----YHAVENLQVIPRSALIDGRSIPEDLPCQA 133 + ID+ N++K L A H ++ + I S ID S E Sbjct: 80 KKIVIDPEKIDEQMEIINLNKIELGAFSKLANHFIKENENI--SIYIDACSSNEQSFSNQ 137 Query: 134 F------------AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 F A K D ++AASIIAKVTRD ++ + + + G GYP+ Sbjct: 138 FKAKLINKNVEIIAEHKADENYKIVSAASIIAKVTRDNVIEEYKEIFGEIG----SGYPS 193 Query: 182 A-KHQQVIK-----EKGPSCIHRLTFRPLRNL 207 K ++ +K KG I R ++ +NL Sbjct: 194 DPKTKKFLKNYVHENKGLPKIARKSWATSKNL 225 >gi|296453566|ref|YP_003660709.1| ribonuclease H [Bifidobacterium longum subsp. longum JDM301] gi|296182997|gb|ADG99878.1| Ribonuclease H [Bifidobacterium longum subsp. longum JDM301] Length = 275 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 73/273 (26%), Positives = 123/273 (45%), Gaps = 85/273 (31%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAII------LDPNN--------- 52 P +LE + + + G DEVGRGALAGPV+V AAI LD ++ Sbjct: 4 PTLDLERSLAAQGYDLITGFDEVGRGALAGPVMVGCAAIWACDLAPLDGDDSAELSGRTY 63 Query: 53 --IPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKA---------- 99 +P G+ DSK ++ +RE +++++ A ++ AS+ ID+ I A Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123 Query: 100 -------------------------------TLDAIYHAVENLQVIPRSA-LIDGRS--- 124 ++I + E+++ +P+ A ++DG S Sbjct: 124 QVERELGLRLGGGLTAKKAAGEIVEGHPGDSVGESIGNCGESVRALPKVAGILDGPSDYI 183 Query: 125 -------------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM---RIAHKKY 168 IP D+ + +KGD ++A A++IAKVTRDRLM ++ +Y Sbjct: 184 TKALNTFDAPDVPIPADITTK----VKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRY 239 Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 Y + + GY +A H+ I E GP+ +HR+++ Sbjct: 240 AVYEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 272 >gi|183221052|ref|YP_001839048.1| putative ribonuclease H [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167779474|gb|ABZ97772.1| Putative ribonuclease H [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 154 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 49/140 (35%), Positives = 68/140 (48%), Gaps = 28/140 (20%) Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPR--------SALIDGRSIPEDL--------- 129 S ++ID+ NI++A I A L V PR + + G E L Sbjct: 2 SAKFIDRFNINQAIFYGISRA---LPVNPRQVTGHLHKTGIPLGTQTKETLAPFLFVDGN 58 Query: 130 -------PCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 P + + I KGD + SI+AASI+AK RD M KYP YGF H GY T Sbjct: 59 YKLKIHKPIEGYLSIPKGDDLVPSISAASILAKTYRDEYMEKMDAKYPGYGFAKHKGYGT 118 Query: 182 AKHQQVIKEKGPSCIHRLTF 201 +H++ +++ G S IHRL+F Sbjct: 119 EEHREALRKLGISPIHRLSF 138 >gi|239917439|ref|YP_002956997.1| ribonuclease HII [Micrococcus luteus NCTC 2665] gi|281414071|ref|ZP_06245813.1| ribonuclease HII [Micrococcus luteus NCTC 2665] gi|239838646|gb|ACS30443.1| ribonuclease HII [Micrococcus luteus NCTC 2665] Length = 250 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 66/198 (33%), Positives = 99/198 (50%), Gaps = 23/198 (11%) Query: 26 VAGIDEVGRGALAGPVVV---AAIILDPNNIPFGINDSKKISHKKREELYEKITS-SAII 81 VAG+DEVGRGALAGPVVV A + IP + DSK ++ ++R L +I +A + Sbjct: 37 VAGMDEVGRGALAGPVVVGVCAVWLPAAGQIPA-VRDSKALTDRRRRALVPQIEDWAAGV 95 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVI----PRSALIDGRS------------- 124 ++ AS ID H + A A A L P + ++DGR Sbjct: 96 ALGEASPAEIDAHGVSAALGLAGRRAWAALCAAVGQEPVALVLDGRDDWLSRSDPDAGPA 155 Query: 125 -IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 P LP +++ + ++AAASI AKV RD +M ++P YG+ + GY +A Sbjct: 156 PAPRPLPPVPTMLVRAEDRCATVAAASIAAKVARDDVMIALDAEHPGYGWAGNKGYGSAA 215 Query: 184 HQQVIKEKGPSCIHRLTF 201 H+ + E+G S HR ++ Sbjct: 216 HRAALTERGASEQHRRSW 233 >gi|66817316|ref|XP_642511.1| hypothetical protein DDB_G0277705 [Dictyostelium discoideum AX4] gi|60470610|gb|EAL68588.1| hypothetical protein DDB_G0277705 [Dictyostelium discoideum AX4] Length = 507 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 80/161 (49%), Gaps = 26/161 (16%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA---- 79 +DE G+GAL GP+ ++ ++LD + + G+ DSKK+S K+RE LY+ I A Sbjct: 138 SMDEAGKGALLGPLFISCVVLDDESEKYLKSMGVTDSKKLSPKRREYLYDIIIEHALYYQ 197 Query: 80 -IISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSA----LIDGRSIPEDLPCQA 133 II S Q + H +++ + Y +++ + +P++ +ID + Q Sbjct: 198 TIILTSEKIDQRRELHTMNQIETNLFYQLIKDSINNLPKNQQCKIIIDSIEMNTQKYSQP 257 Query: 134 FAV------------IKGDSISLSIAAASIIAKVTRDRLMR 162 F + K D +S+ AASIIAKV RDR M+ Sbjct: 258 FKMEFPPPLYQIYCETKADHKFISVGAASIIAKVERDRWMK 298 >gi|332157881|ref|YP_004423160.1| ribonuclease HII [Pyrococcus sp. NA2] gi|331033344|gb|AEC51156.1| ribonuclease HII [Pyrococcus sp. NA2] Length = 219 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 89/174 (51%), Gaps = 22/174 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-I 80 + G+DE GRG + GP+V+ A+++ + + G+ DSK+++ ++RE ++++I + Sbjct: 3 IGGVDEAGRGPVIGPLVIVAVVISEDMLSDLRSIGVRDSKQLTPEQRERIFDEIVNVLDD 62 Query: 81 ISISSASHQYIDKH--NIHKATLDAIYHAVENLQVIPRSALIDGRSIPE----------- 127 S+ S Q ID +++ ++ A+ +L V P +D + E Sbjct: 63 YSVVVVSPQEIDNRSSSLNLLEVEKFALALNSLNVKPSRIYVDSADVDEKRFASLIRAKL 122 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + + A K D+ +AAASI+AKV RDR + ++Y D+G GYP+ Sbjct: 123 NYNAEVIAEHKADAKYEVVAAASILAKVIRDREIEKLKERYGDFG----SGYPS 172 >gi|20093626|ref|NP_613473.1| ribonuclease HII [Methanopyrus kandleri AV19] gi|74561281|sp|Q8TYV5|RNH2_METKA RecName: Full=Ribonuclease HII; Short=RNase HII gi|19886492|gb|AAM01403.1| Ribonuclease HII [Methanopyrus kandleri AV19] Length = 210 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 18/168 (10%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 V GIDE GRG + GP+VVA ++ + G DSK+++ R L + S + + Sbjct: 4 VMGIDEAGRGPVFGPMVVAGVLAPKRELGLGARDSKELTRSARRRLIRALMSDERLRVDL 63 Query: 86 --ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID--GRSIPE------DLP--CQA 133 ID+ + KA +AI V + +P ++D G PE DLP Sbjct: 64 RIVWPWEIDEEGVAKAEFEAIRELVR--RAMPDEVILDKPGNYSPERLRRELDLPEGINL 121 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 A + D+ ++AASI+AK RD ++R+ +Y + G GYP+ Sbjct: 122 IAEERADAKYEVVSAASIVAKTYRDWIVRLLELEYGEVG----SGYPS 165 >gi|289810861|ref|ZP_06541490.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 66 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 37/66 (56%), Positives = 42/66 (63%), Gaps = 1/66 (1%) Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 LIDG PE LP + AV+KGDS I+AASI+AKVTRD M +P YGF H G Sbjct: 2 LIDGNRCPE-LPVPSMAVVKGDSRVAEISAASILAKVTRDAEMAALDIVFPQYGFAQHKG 60 Query: 179 YPTAKH 184 YPTA H Sbjct: 61 YPTAFH 66 >gi|239622462|ref|ZP_04665493.1| ribonuclease HII [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514459|gb|EEQ54326.1| ribonuclease HII [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 279 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 74/277 (26%), Positives = 125/277 (45%), Gaps = 89/277 (32%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAII------LDPNN--------- 52 P +LE + + +AG DEVGRGALAGPV+V AAI LD ++ Sbjct: 4 PTLDLERSLAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63 Query: 53 --IPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNI------------- 96 +P G+ DSK ++ +RE +++++ A ++ AS+ ID+ I Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNAEIDEWGITYALGVAALRALS 123 Query: 97 ----------------HKATLDAIYHAVE----------------NLQVIPR-SALIDGR 123 KA+ ++ VE +++ +P+ + ++DG Sbjct: 124 QVERELGLRLGGESTIKKASGESAGEIVEGRPGGSVGEFIGNCGGSVRALPKVAGILDGP 183 Query: 124 S----------------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM---RIA 164 S IP D+ + +KGD ++A A++IAKVTRDRLM + Sbjct: 184 SDYITKALNTFDAPDVPIPADITTK----VKGDQHCATVATAAVIAKVTRDRLMVDLAQS 239 Query: 165 HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + +Y Y + + GY +A H+ I E GP+ +HR+++ Sbjct: 240 NPRYAAYEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 276 >gi|322690530|ref|YP_004220100.1| ribonuclease HII [Bifidobacterium longum subsp. longum JCM 1217] gi|320455386|dbj|BAJ66008.1| ribonuclease HII [Bifidobacterium longum subsp. longum JCM 1217] Length = 279 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 74/277 (26%), Positives = 125/277 (45%), Gaps = 89/277 (32%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAII------LDPNN--------- 52 P +LE + + +AG DEVGRGALAGPV+V AAI LD ++ Sbjct: 4 PTLDLERSLAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63 Query: 53 --IPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNI------------- 96 +P G+ DSK ++ +RE +++++ A ++ AS+ ID+ I Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123 Query: 97 ----------------HKATLDAIYHAVE----------------NLQVIPR-SALIDGR 123 KA+ ++ VE +++ +P+ + ++DG Sbjct: 124 QVERELGLRLRGESTIKKASGESAGKIVEGRPGGSVGESIGNCEGSVRALPKVAGILDGP 183 Query: 124 S----------------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM---RIA 164 S IP D+ + +KGD ++A A++IAKVTRDRLM + Sbjct: 184 SDYITKALNTFDAPDVPIPADITTK----VKGDQHCATVATAAVIAKVTRDRLMVDLAQS 239 Query: 165 HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + +Y Y + + GY +A H+ I E GP+ +HR+++ Sbjct: 240 NPRYAAYEWAHNKGYGSAAHRTAIAEHGPTPLHRVSW 276 >gi|213691335|ref|YP_002321921.1| Ribonuclease H [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522796|gb|ACJ51543.1| Ribonuclease H [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457405|dbj|BAJ68026.1| ribonuclease HII [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 279 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 75/277 (27%), Positives = 125/277 (45%), Gaps = 89/277 (32%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAII------LDPNN--------- 52 P +LE + + + G DEVGRGALAGPV+V AAI LD ++ Sbjct: 4 PTLDLERSLAAQGYDLITGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63 Query: 53 --IPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNI------------- 96 +P G+ DSK ++ +RE +++++ A ++ AS+ ID+ I Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123 Query: 97 ----------------HKATLDA----------------IYHAVENLQVIPRSA-LIDGR 123 KA++++ I + E+++ +P+ A ++DG Sbjct: 124 QVERELGLRLGGRLAARKASMESAGEIVEGHPGDSVGESIGNCRESVRALPKVAGILDGP 183 Query: 124 S----------------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM-RIAHK 166 S IP D+ + +KGD ++A A++IAKVTRDRLM +A Sbjct: 184 SDYITKALNTFDAPDVPIPADITTK----VKGDQHCATVATAAVIAKVTRDRLMVDLAQS 239 Query: 167 K--YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 Y Y + + GY +A H+ I E GP+ +HR+++ Sbjct: 240 NPCYAAYEWAHNKGYGSAAHRTAIAEHGPTPLHRVSW 276 >gi|329571610|gb|EGG53291.1| ribonuclease HII [Enterococcus faecalis TX1467] Length = 103 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/101 (45%), Positives = 67/101 (66%), Gaps = 2/101 (1%) Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 A+++L P LID + D+P ++IKGD+ S+SIAAASIIAKVTRDRLM + Sbjct: 4 AIDDLAFAPDYLLIDAMQL--DVPQPQESLIKGDARSISIAAASIIAKVTRDRLMEEYDE 61 Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 YP YGF ++ GY T +H +++ G + IHR TF P++++ Sbjct: 62 LYPGYGFKNNAGYGTKEHLLGLEKYGVTPIHRRTFAPIKDM 102 >gi|147920602|ref|YP_685601.1| ribonuclease H (RNase H) [uncultured methanogenic archaeon RC-I] gi|121688011|sp|Q0W5R8|RNH2_UNCMA RecName: Full=Ribonuclease HII; Short=RNase HII gi|110620997|emb|CAJ36275.1| ribonuclease H (RNase H) [uncultured methanogenic archaeon RC-I] Length = 224 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 25/182 (13%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI 75 +K + GIDE GRG + GP+VV II++ ++P G+ DSKK+S KKREE + Sbjct: 3 KKRTSTIMGIDEAGRGPVIGPLVVCGIIVEEKDLPAIEAMGLKDSKKLSAKKREEFAAAL 62 Query: 76 TSSAIISISSASHQYID-----KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--- 127 + +S Q ID + N+++ ++ + + + P A +D + Sbjct: 63 KNKYKYELSVLPPQEIDARFESEDNLNRLEVNCFAGLIRSAK--PTIAYLDACDVNAERF 120 Query: 128 --------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 D + + + DS ++AASIIAKV RD L+R +K G D GY Sbjct: 121 GINIKKCLDFELEIVSAHEADSKYPIVSAASIIAKVHRDSLIREISEK---MGEDVGSGY 177 Query: 180 PT 181 P Sbjct: 178 PA 179 >gi|13540964|ref|NP_110652.1| ribonuclease HII [Thermoplasma volcanium GSS1] Length = 219 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 26/201 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAIISISS 85 GIDE GRG + GP+V++ + + G+ DSK +S K+RE L++KIT + S Sbjct: 14 CGIDEAGRGPVIGPMVISIVCCKEEYLREIGVKDSKMLSRKRREYLFDKITKNCAYSYVV 73 Query: 86 ASHQYIDK-------HNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFA 135 S + ++K + I + + + E + I +I+ R+ I E + Sbjct: 74 VSPETLNKDMASESLNKIEENYILELLSKAEGIVYIDCFDVIEERAEKYIREKSGKEVVC 133 Query: 136 VIKGDSISLSIAAASIIAKVTRDR-LMRIAHKKYPDYGFDSHVGYPT---------AKHQ 185 K DSI +++AASI++KV RDR + +IA K YGF GYP+ Q Sbjct: 134 KHKADSIYPAVSAASIVSKVIRDREIDKIAEK----YGFFGS-GYPSDPRTIDFLRKAMQ 188 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 Q + + + IH T++ ++ Sbjct: 189 QGLDLRSVARIHWETYKKIKE 209 >gi|161528901|ref|YP_001582727.1| ribonuclease HII [Nitrosopumilus maritimus SCM1] gi|160340202|gb|ABX13289.1| ribonuclease HII [Nitrosopumilus maritimus SCM1] Length = 205 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 89/175 (50%), Gaps = 26/175 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-- 79 + G+D+ GRG++ GP+V++ I ++ N+ G+ DSKK+S K RE LY++I Sbjct: 3 ICGVDDAGRGSMLGPLVISGISINKKNLRKLSSLGVKDSKKLSPKSRELLYKQIIELVDD 62 Query: 80 --IISISSAS-HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 I I+ S + KH +++ L+A Y A L++ P ++ +D + + + Sbjct: 63 YYIAKITPRSIDASVKKHGLNE--LEAKYMAKVVLKLDPDTSYVDSCDVNPKRFGKEISK 120 Query: 137 IK----------GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + DS + ++AASIIAKVTRDR + K Y D GYP+ Sbjct: 121 LSDNHKIKSYHHADSRFVVVSAASIIAKVTRDRAIEKLRKTY-----DLGSGYPS 170 >gi|159905682|ref|YP_001549344.1| ribonuclease HII [Methanococcus maripaludis C6] gi|238686969|sp|A9A9T9|RNH2_METM6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|159887175|gb|ABX02112.1| ribonuclease HII [Methanococcus maripaludis C6] Length = 239 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/212 (30%), Positives = 103/212 (48%), Gaps = 36/212 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 + G+DE GRG + GP+V+A++ ++ ++ G+ DSK++S KKREELY KI+ + Sbjct: 20 IVGLDEAGRGPVIGPMVIASVKINEKDLYKLQDLGLKDSKQLSKKKREELYVKISEICNV 79 Query: 82 SISSASHQYIDKH----NIHKATLDAI----YHAVENLQVIPRSALIDGRSIPEDLPCQA 133 + + ID+ N++K L A H ++ + I S ID S E Sbjct: 80 KKIVIAPEKIDEQMEITNLNKIELSAFSKLANHFIKENENI--SIYIDACSSNEQSFSNQ 137 Query: 134 F------------AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 F A K D ++AASIIAKVTRD ++ K + + G GYP+ Sbjct: 138 FKAKLINKNVEIIAEHKADENYKIVSAASIIAKVTRDNVIEEYKKTFGEIG----SGYPS 193 Query: 182 A-KHQQVIKE-----KGPSCIHRLTFRPLRNL 207 K ++ +K+ KG I R ++ +NL Sbjct: 194 DPKTKKFLKKYVHENKGLPKIARKSWATSKNL 225 >gi|118431079|ref|NP_147280.2| ribonuclease HII [Aeropyrum pernix K1] gi|150421651|sp|Q9YET5|RNH2_AERPE RecName: Full=Ribonuclease HII; Short=RNase HII gi|116062405|dbj|BAA79461.2| ribonuclease HII [Aeropyrum pernix K1] Length = 225 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 95/207 (45%), Gaps = 29/207 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 V G+DE GRG+L G +VVA ++ + G+ DSK++S R ELY +I+ Sbjct: 4 VVGVDEAGRGSLVGDLVVAGFAVEEARLGELQSLGVRDSKQLSPAARVELYREISGVGFF 63 Query: 82 SISSASHQYIDKHNIH----KATLDAIYHAVENLQVIPRSALIDGRSIPEDL-------- 129 ++ + ID NI+ KA + + V L V P ++D + L Sbjct: 64 TVEAIRPWEIDGENINILVTKAVEEIVSRIVSYLGVHPSLVVVDKYGDVQGLRLALTRLG 123 Query: 130 --PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQ 186 P K DS ++AASI+AKV RD +++ + Y G GYP+ + ++ Sbjct: 124 IEPRSILVEEKADSRYPVVSAASIVAKVVRDARLQVLRRMYGVRGS----GYPSDPETRE 179 Query: 187 VIKE-----KGPSCIHRLTFRPLRNLS 208 ++E + P I R T+ +R L Sbjct: 180 WVREVFARGEAPRVI-RYTWSTVRKLG 205 >gi|119872804|ref|YP_930811.1| ribonuclease HII [Pyrobaculum islandicum DSM 4184] gi|189043646|sp|A1RU36|RNH2_PYRIL RecName: Full=Ribonuclease HII; Short=RNase HII gi|119674212|gb|ABL88468.1| RNase HII [Pyrobaculum islandicum DSM 4184] Length = 195 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 38/207 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSA----- 79 + GIDE GRG + GP+V+AA+ D + G+ DSK +S KRE +Y +I A Sbjct: 2 ICGIDEAGRGPVVGPMVIAAVAGDGERLLQLGVRDSKTLSPTKREVIYARIIEVADCVNY 61 Query: 80 IISISSASHQYIDKHNIHKATLD----------AIYHAVENLQVIPRS-----ALIDGRS 124 ++ +Y+ + ++ LD A + V++ V R + I GR Sbjct: 62 VVVEPHIIDEYVRRRMLNSLELDFTARLIELCPAELYYVDSPDVNSRRYGDALSFITGRR 121 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AK 183 + A+ G+S+ +AAASI+AKV RDRL+ I ++ D+G GYP+ K Sbjct: 122 V--------VALHGGESVP-QVAAASIVAKVIRDRLIDILKREIGDFGS----GYPSDVK 168 Query: 184 HQQVIK-EKGP-SCIHRLTFRPLRNLS 208 + ++ K P C+ R ++R LR L+ Sbjct: 169 TIEWLRLGKIPVECVRR-SWRTLRYLN 194 >gi|14324349|dbj|BAB59277.1| ribonuclease HII [Thermoplasma volcanium GSS1] Length = 218 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 26/201 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAIISISS 85 GIDE GRG + GP+V++ + + G+ DSK +S K+RE L++KIT + S Sbjct: 13 CGIDEAGRGPVIGPMVISIVCCKEEYLREIGVKDSKMLSRKRREYLFDKITKNCAYSYVV 72 Query: 86 ASHQYIDK-------HNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFA 135 S + ++K + I + + + E + I +I+ R+ I E + Sbjct: 73 VSPETLNKDMASESLNKIEENYILELLSKAEGIVYIDCFDVIEERAEKYIREKSGKEVVC 132 Query: 136 VIKGDSISLSIAAASIIAKVTRDR-LMRIAHKKYPDYGFDSHVGYPT---------AKHQ 185 K DSI +++AASI++KV RDR + +IA K YGF GYP+ Q Sbjct: 133 KHKADSIYPAVSAASIVSKVIRDREIDKIAEK----YGFFGS-GYPSDPRTIDFLRKAMQ 187 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 Q + + + IH T++ ++ Sbjct: 188 QGLDLRSVARIHWETYKKIKE 208 >gi|34395818|sp|Q97CG6|RNH2_THEVO RecName: Full=Ribonuclease HII; Short=RNase HII Length = 212 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 17/167 (10%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAIISISS 85 GIDE GRG + GP+V++ + + G+ DSK +S K+RE L++KIT + S Sbjct: 7 CGIDEAGRGPVIGPMVISIVCCKEEYLREIGVKDSKMLSRKRREYLFDKITKNCAYSYVV 66 Query: 86 ASHQYIDK-------HNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFA 135 S + ++K + I + + + E + I +I+ R+ I E + Sbjct: 67 VSPETLNKDMASESLNKIEENYILELLSKAEGIVYIDCFDVIEERAEKYIREKSGKEVVC 126 Query: 136 VIKGDSISLSIAAASIIAKVTRDR-LMRIAHKKYPDYGFDSHVGYPT 181 K DSI +++AASI++KV RDR + +IA K YGF GYP+ Sbjct: 127 KHKADSIYPAVSAASIVSKVIRDREIDKIAEK----YGFFGS-GYPS 168 >gi|317482036|ref|ZP_07941061.1| ribonuclease HII [Bifidobacterium sp. 12_1_47BFAA] gi|316916603|gb|EFV38000.1| ribonuclease HII [Bifidobacterium sp. 12_1_47BFAA] Length = 279 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 74/277 (26%), Positives = 124/277 (44%), Gaps = 89/277 (32%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAII------LDPNN--------- 52 P +LE + + +AG DEVGRGALAGPV+V AAI LD ++ Sbjct: 4 PTLDLERSLAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63 Query: 53 --IPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNI------------- 96 +P G+ DSK ++ +RE +++++ A ++ AS+ ID+ I Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123 Query: 97 ----------------HKATLDAIYHAVE----------------NLQVIPR-SALIDGR 123 KA ++ VE +++ +P+ + ++DG Sbjct: 124 QVERELGLRLGGGLTAKKAAGESAGKIVEGRPGGSVGESIGNCEGSVRALPKVAGILDGP 183 Query: 124 S----------------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM---RIA 164 S IP D+ + +KGD ++A A++IAKVTRDRLM + Sbjct: 184 SDYITKALNTFDAPDVPIPADITTK----VKGDQHCATVATAAVIAKVTRDRLMVDLAQS 239 Query: 165 HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + +Y Y + + GY +A H+ I E GP+ +HR+++ Sbjct: 240 NPRYAAYEWAHNKGYGSAAHRTAIAEHGPTPLHRVSW 276 >gi|227545838|ref|ZP_03975887.1| possible ribonuclease H [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213954|gb|EEI81793.1| possible ribonuclease H [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 275 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 72/273 (26%), Positives = 121/273 (44%), Gaps = 85/273 (31%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAII------LDPNN--------- 52 P +LE + + + G DEVGRGALAGPV+V AAI LD ++ Sbjct: 4 PTLDLERSLAAQGYDLITGFDEVGRGALAGPVMVGCAAIWACDLAPLDGDDSAELSGRTY 63 Query: 53 --IPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVE 109 +P G+ DSK ++ +RE +++++ A ++ AS+ ID+ I A A A+ Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123 Query: 110 -----------------------------------------NLQVIPR-SALIDGRS--- 124 +++ +P+ + ++DG S Sbjct: 124 QVERELGLRLGGGLTAKKAAGEIVEGRPGGSVGESIGNCGGSVRALPKVAGILDGPSDYI 183 Query: 125 -------------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM---RIAHKKY 168 IP D+ + +KGD ++A A++IAKVTRDRLM ++ +Y Sbjct: 184 TKALNTFDAPDVPIPADITTK----VKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRY 239 Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 Y + + GY +A H+ I E GP+ +HR+++ Sbjct: 240 AAYEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 272 >gi|71747330|ref|XP_822720.1| ribonuclease HII [Trypanosoma brucei TREU927] gi|70832388|gb|EAN77892.1| ribonuclease HII, putative [Trypanosoma brucei] Length = 477 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 44/68 (64%) Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 +I+GD SL+IAAAS +AKV+RD +M YP Y F + GYP H + +K+ G S Sbjct: 392 IIEGDKRSLTIAAASCLAKVSRDEIMDYLDPLYPKYHFAENKGYPVDHHMRAVKKHGLSS 451 Query: 196 IHRLTFRP 203 IHR ++RP Sbjct: 452 IHRRSYRP 459 Score = 42.0 bits (97), Expect = 0.057, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 13/69 (18%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDP-----NNI--------PFGINDSKKISHKK 67 K + G DE GRG LAGPVV AA+ P N++ F I DSK +S + Sbjct: 128 KETFLTIGCDEAGRGPLAGPVVGAAVCRIPRSSFNNDLKALYDADEEFQIFDSKSVSETQ 187 Query: 68 REELYEKIT 76 R+ +Y IT Sbjct: 188 RKVVYNNIT 196 >gi|261332495|emb|CBH15490.1| ribonuclease HII, putative [Trypanosoma brucei gambiense DAL972] Length = 477 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 44/68 (64%) Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 +I+GD SL+IAAAS +AKV+RD +M YP Y F + GYP H + +K+ G S Sbjct: 392 IIEGDKRSLTIAAASCLAKVSRDEIMDYLDPLYPKYHFAENKGYPVDHHMRAVKKHGLSS 451 Query: 196 IHRLTFRP 203 IHR ++RP Sbjct: 452 IHRRSYRP 459 Score = 42.0 bits (97), Expect = 0.057, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 13/69 (18%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDP-----NNI--------PFGINDSKKISHKK 67 K + G DE GRG LAGPVV AA+ P N++ F I DSK +S + Sbjct: 128 KETFLTIGCDEAGRGPLAGPVVGAAVCRIPRSSFNNDLKALYDADEEFQIFDSKSVSETQ 187 Query: 68 REELYEKIT 76 R+ +Y IT Sbjct: 188 RKVVYNNIT 196 >gi|27382791|ref|NP_774320.1| ribonuclease HII [Bradyrhizobium japonicum USDA 110] gi|27355964|dbj|BAC52945.1| blr7680 [Bradyrhizobium japonicum USDA 110] Length = 111 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/107 (39%), Positives = 59/107 (55%), Gaps = 7/107 (6%) Query: 17 MVR-EKNMW-----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 M+R E ++W VAG+DE G LAGPV A+IL P GI+DSKK+ REE Sbjct: 1 MLRFETSLWESGHAAVAGVDEAGMSPLAGPVSAGAVILKPGTRIVGIDDSKKLDAAAREE 60 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116 L ++I A ++ + ID NI+ A + A+ AV L++ PR Sbjct: 61 LAKEIKEKAESWCVAFVEVEEIDAINIYWAGIQAMQRAVRGLRLPPR 107 >gi|257076035|ref|ZP_05570396.1| ribonuclease HII [Ferroplasma acidarmanus fer1] Length = 205 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 22/170 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITS---SAIIS 82 GIDE GRG L GP+V+A + D ++ G+ DSKK+S +RE L+ ++ S + +I Sbjct: 4 CGIDEAGRGPLIGPMVMAILCGDRESLEIIGVADSKKLSPGRRESLFARLQSYKYNFVII 63 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS-----------IPEDLPC 131 S +Y++ ++ L+ Y A + P S+ + S + E+ Sbjct: 64 SPSEIDRYVEHQKLN--VLEETY-ASKLASWAPASSTVYVDSFDVNELRLQSLLMENTKR 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 Q K D I ++AASIIAKV RDR + HK Y D+G GYP+ Sbjct: 121 QIVCRHKADEIYPCVSAASIIAKVIRDREIDKLHKDYGDFG----SGYPS 166 >gi|322828022|gb|EFZ31977.1| ribonuclease HII, putative [Trypanosoma cruzi] Length = 479 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 11/101 (10%) Query: 113 VIPRSALIDGRSIPEDLPCQAFA----------VIKGDSISLSIAAASIIAKVTRDRLMR 162 V P L+DG + PE+ F +I+GD SL+IAAAS +AKV RD +M Sbjct: 360 VQPPLILVDGHAAPEET-ISFFTEIQTGGCVQPIIEGDKRSLTIAAASCLAKVARDEIMN 418 Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 YP Y F + GYP H + ++ G S IHR +++P Sbjct: 419 YVSTLYPKYQFAENKGYPVEYHMRAVQRYGVSSIHRKSYKP 459 Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 17/96 (17%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDP----NN---------IPFGINDSKKISHKK 67 K + G DE GRG LAGPVV AA+ P NN F I DSK +S + Sbjct: 128 KETYLTIGCDEAGRGPLAGPVVGAAVCRIPLSSFNNELCAVYDASEEFQIFDSKSLSEGQ 187 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDA 103 R +++ IT + A ++ +H A+ DA Sbjct: 188 RNVVFQNITGYEKLFHLVADKAFV----VHHASGDA 219 >gi|46190774|ref|ZP_00121089.2| COG0164: Ribonuclease HII [Bifidobacterium longum DJO10A] gi|189439885|ref|YP_001954966.1| ribonuclease HII [Bifidobacterium longum DJO10A] gi|189428320|gb|ACD98468.1| Ribonuclease HII [Bifidobacterium longum DJO10A] Length = 279 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 73/277 (26%), Positives = 124/277 (44%), Gaps = 89/277 (32%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAII------LDPNN--------- 52 P +LE + + + G DEVGRGALAGPV+V AAI LD ++ Sbjct: 4 PTLDLERSLAAQGYDLITGFDEVGRGALAGPVMVGCAAIWACDLAPLDGDDSAELSGRTY 63 Query: 53 --IPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNI------------- 96 +P G+ DSK ++ +RE +++++ A ++ AS+ ID+ I Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123 Query: 97 ----------------HKATLDAIYHAVE----------------NLQVIPR-SALIDGR 123 KA+ ++ VE +++ +P+ + ++DG Sbjct: 124 QVERELGLRLGGESTIKKASGESAGKIVEGRPGGSVGESIGNCEGSVRALPKVAGILDGP 183 Query: 124 S----------------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM---RIA 164 S IP D+ + +KGD ++A A++IAKVTRDRLM + Sbjct: 184 SDYITKALNTFDAPDVPIPADITTK----VKGDQHCATVATAAVIAKVTRDRLMVDLAQS 239 Query: 165 HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + +Y Y + + GY +A H+ I E GP+ +HR+++ Sbjct: 240 NPRYAAYEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 276 >gi|71415356|ref|XP_809747.1| ribonuclease HII [Trypanosoma cruzi strain CL Brener] gi|70874177|gb|EAN87896.1| ribonuclease HII, putative [Trypanosoma cruzi] Length = 479 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 11/101 (10%) Query: 113 VIPRSALIDGRSIPEDLPCQAFA----------VIKGDSISLSIAAASIIAKVTRDRLMR 162 V P L+DG + PE+ F +I+GD SL+IAAAS +AKV RD +M Sbjct: 360 VQPPLILVDGHAAPEET-ISFFTEIQTGGCVQPIIEGDKRSLTIAAASCLAKVARDEIMN 418 Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 YP Y F + GYP H + ++ G S IHR +++P Sbjct: 419 YVSTLYPKYQFAENKGYPVEYHMRAVQRYGVSSIHRKSYKP 459 Score = 41.2 bits (95), Expect = 0.091, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 17/96 (17%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDP----NN---------IPFGINDSKKISHKK 67 K + G DE GRG LAGPVV AA+ P NN F I DSK +S + Sbjct: 128 KETYLTIGCDEAGRGPLAGPVVGAAVCRIPLSSFNNELCAVYDTREEFQIFDSKSLSEGQ 187 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDA 103 R +++ IT + A ++ +H A+ DA Sbjct: 188 RNVVFQNITGYEKLFHLVADKAFV----VHHASGDA 219 >gi|71406256|ref|XP_805682.1| ribonuclease HII [Trypanosoma cruzi strain CL Brener] gi|70869181|gb|EAN83831.1| ribonuclease HII, putative [Trypanosoma cruzi] Length = 479 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 11/101 (10%) Query: 113 VIPRSALIDGRSIPEDLPCQAFA----------VIKGDSISLSIAAASIIAKVTRDRLMR 162 V P L+DG + PE+ F +I+GD SL+IAAAS +AKV RD +M Sbjct: 360 VQPPLILVDGHAAPEET-ISFFTEIQTGGCVQPIIEGDKRSLTIAAASCLAKVARDEIMN 418 Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 YP Y F + GYP H + ++ G S IHR +++P Sbjct: 419 YVSTLYPKYQFAENKGYPVEYHMRAVQRYGVSSIHRKSYKP 459 Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 17/96 (17%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDP----NN---------IPFGINDSKKISHKK 67 K + G DE GRG LAGPVV AA+ P NN F I DSK +S + Sbjct: 128 KETYLTIGCDEAGRGPLAGPVVGAAVCRIPLSSFNNELCAVYDAREEFQIFDSKSLSEGQ 187 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDA 103 R +++ IT + A ++ +H A+ DA Sbjct: 188 RNVVFQNITGYEKLFHLVADKAFV----VHHASGDA 219 >gi|291333356|gb|ADD93062.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S05-C10] Length = 830 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 90/181 (49%), Gaps = 28/181 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI- 80 + G DE GRG + GP+VVAA+ + + I G++DSK +S KKREEL + I Sbjct: 4 IVGADEAGRGPVLGPLVVAAVAIPATDLQRLIDLGVDDSKALSPKKREELNQIIHQEPTW 63 Query: 81 -ISISSASHQYID----KHNIHKATLDAIYHAVENLQVIPRSALI----------DGRSI 125 +SI S + ID K ++ +D A+++L+V LI GR++ Sbjct: 64 QVSIIECSPERIDVTMEKKTLNDLEVDLFGEAIDSLEVERIEELILDACDTNEARFGRNV 123 Query: 126 PEDLPCQAF--AVIK---GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + VI D+ + + AASI+AKV RD++++ K D GF+ GYP Sbjct: 124 ASKISSGKIVETVISKHGADAENPVVGAASIVAKVHRDKVIQSIAK---DRGFNVGSGYP 180 Query: 181 T 181 + Sbjct: 181 S 181 >gi|288931994|ref|YP_003436054.1| ribonuclease HII [Ferroglobus placidus DSM 10642] gi|288894242|gb|ADC65779.1| ribonuclease HII [Ferroglobus placidus DSM 10642] Length = 211 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 95/201 (47%), Gaps = 23/201 (11%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---- 77 +AGIDE G+G + GP+VV + + ++ G+ DSK++S +KR+EL EK+ Sbjct: 3 IAGIDEAGKGPVIGPLVVCGVSCEEKDVEALKKLGVKDSKRLSPEKRKELAEKLKEIVEH 62 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-PEDLPCQAFAV 136 I+ + ++K I++ +A + L P +D + PE L + Sbjct: 63 ETIVISPEELNSKMEKTTINEILKEACVEIISKLN--PDVVFVDSFDVKPERLE-EELKR 119 Query: 137 IKGDSI--------SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK--HQQ 186 + G + + +AAASIIAK RD ++ ++Y D+G T + +Q Sbjct: 120 LTGKKVVAMHEGEREVVVAAASIIAKCLRDEIIEELKREYGDFGSGYASDEKTRRWLEEQ 179 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 + + K P I R ++ + NL Sbjct: 180 IKRGKIPE-IVRKRWKTVENL 199 >gi|45358937|ref|NP_988494.1| ribonuclease HII [Methanococcus maripaludis S2] gi|73917612|sp|Q6LXH7|RNH2_METMP RecName: Full=Ribonuclease HII; Short=RNase HII gi|45047803|emb|CAF30930.1| Ribonuclease HII [Methanococcus maripaludis S2] Length = 242 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 84/181 (46%), Gaps = 32/181 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 + G+DE GRG + GP+V+A++ +D N+ + DSK++S KKREELY I + Sbjct: 23 IVGLDEAGRGPVLGPMVIASVKIDEKNLYKLNDLELKDSKQLSKKKREELYIIINEMCDV 82 Query: 82 SISSASHQYIDKH----NIHKATLDAI-----YHAVENLQVIPRSALIDGRSIPEDLPCQ 132 + IDK N++K L A + EN + S ID S E Sbjct: 83 EKIVIDPETIDKQMEIINLNKIELSAFSKLSNHFIRENDNI---SIYIDACSSSEQSFSN 139 Query: 133 AF------------AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 F A K D ++AASIIAKVTRDR++ + + + G GYP Sbjct: 140 QFKAKLINKNVEIIAEHKADENYKIVSAASIIAKVTRDRVIEEYKETFGEIG----SGYP 195 Query: 181 T 181 + Sbjct: 196 S 196 >gi|224001680|ref|XP_002290512.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220973934|gb|EED92264.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 249 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 35/188 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDE GRG + GP+ AA P +IP G NDSK++S +KR L+++I S I Sbjct: 1 ILGIDEAGRGPVLGPMTYAAAYWSPTATDIPEGFNDSKQLSAEKRASLFDEIKRSDSIGF 60 Query: 84 -------SSASHQYI--DKHNI----HKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 S S + + +N+ H A ++ I+ AV + V +A ID +P+ Sbjct: 61 VLRVLHASEISRNMLRSEPYNLNAMSHDAAMEMIW-AVLDSGVKIETAYIDTVGMPDAYR 119 Query: 131 CQAFAVIKGDSISLSI-----------AAASIIAKVTRDRLMRIAHKKY------PDYGF 173 + V +G +I + +AAS++AK +RD L IA+ K+ P G Sbjct: 120 SKLERVFQGHNIEFIVEKKADAKYAPCSAASVVAKESRDTL--IANWKWTETSYEPKDGR 177 Query: 174 DSHVGYPT 181 + GYP+ Sbjct: 178 NFGSGYPS 185 >gi|170289973|ref|YP_001736789.1| ribonuclease HII [Candidatus Korarchaeum cryptofilum OPF8] gi|170174053|gb|ACB07106.1| ribonuclease HII [Candidatus Korarchaeum cryptofilum OPF8] Length = 217 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 26/174 (14%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA---I 80 GIDE GRG + GP+VVAA+IL G+ DSK +S ++REEL+ I SA + Sbjct: 2 GIDEAGRGPVIGPMVVAAVILKRREAKRLKEMGVTDSKLLSAERREELFPMIIESAESYL 61 Query: 81 ISISSASH--QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG------------RSIP 126 I + + + K+ ++ + + + L+ P ++D R Sbjct: 62 IKVIEPKRIDEAVSKNMLNLLEAEVMSELIRELR--PARVIVDSPMRNCRKFSDVLREFL 119 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 D + A K DS + +A+ASIIAKV RDR +R + G + GYP Sbjct: 120 GDSSVKIIAENKADSKYIQVASASIIAKVERDRRIRELSEL---TGVEIGSGYP 170 >gi|84490178|ref|YP_448410.1| ribonuclease HII [Methanosphaera stadtmanae DSM 3091] gi|115305551|sp|Q2NEI6|RNH2_METST RecName: Full=Ribonuclease HII; Short=RNase HII gi|84373497|gb|ABC57767.1| RnhB [Methanosphaera stadtmanae DSM 3091] Length = 212 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 29/206 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG++ GP+V+ +++ I F G+ DSK+++ KKR + KI A Sbjct: 9 ILGIDEAGRGSVIGPLVIGGVLMKKKKIRFLNRIGVKDSKQLNMKKRTIISRKIKKIAQF 68 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVI-----PRSALIDGRSIPEDLPCQAFAV 136 ID+ + L+ I E ++ I P + ID + E+ Sbjct: 69 KTIIIPAHTIDEKRNNDINLNEI--ETEGMEEIIKIMKPNACYIDCIDVRENRFHDKIQK 126 Query: 137 I----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ- 185 I K D ++AASIIAKV RD+ + I ++Y G GYP+ K+ Sbjct: 127 INPNMTVVTEHKADETYKIVSAASIIAKVERDKQLEIIRQEYGSVGS----GYPSDKNTI 182 Query: 186 ---QVIKEKGPSCIHRLTFRPLRNLS 208 + IK I R T++ + N++ Sbjct: 183 NYLKTIKNNQFPPIIRKTWKTIENIT 208 >gi|269977901|ref|ZP_06184855.1| ribonuclease HII [Mobiluncus mulieris 28-1] gi|269933867|gb|EEZ90447.1| ribonuclease HII [Mobiluncus mulieris 28-1] Length = 278 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 8/105 (7%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI- 80 V G+DEVGRGALAGPV + ++ + P G+NDSK ++ ++RE L + I S Sbjct: 37 VGGMDEVGRGALAGPVCIGVTVVSATELAAGFPPGLNDSKALTARRREALVQPIQSWVKD 96 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQV---IPRSALIDG 122 +I A++ ID+ I A A + A+ L +P+ L+DG Sbjct: 97 FAIGEATNMEIDEMGIMAAMRLAGWRALNQLDARGHLPQKLLLDG 141 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 2/67 (2%) Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 ++K D + ++A A+++AKV RD M + + P YG+ +VGY T H++ I GPS Sbjct: 212 LVKADQHAATVAGAAVLAKVYRDAFM--SRLEDPGYGWSHNVGYGTKAHREAISRLGPSR 269 Query: 196 IHRLTFR 202 HR T++ Sbjct: 270 WHRHTWK 276 >gi|327401115|ref|YP_004341954.1| ribonuclease HII [Archaeoglobus veneficus SNP6] gi|327316623|gb|AEA47239.1| ribonuclease HII [Archaeoglobus veneficus SNP6] Length = 212 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 22/179 (12%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS 78 M VAGIDE G+G + GP+VV + + G+ DSK++S K+REEL +I Sbjct: 1 MVRVAGIDEAGKGPVIGPMVVCGVCCSEEELVELEKIGVRDSKRLSPKRREELAREIKKL 60 Query: 79 AIISISSASHQYID----KHNIHKATLDAIYHAVENLQVIPRSALIDGRS-IPEDLP--- 130 + + + + +D K I++ D + L P +D IPE L Sbjct: 61 SNVYVIKLEPEKLDRLMEKKTINEILTDCYAEIINELN--PDLTFVDSPDVIPERLSEAL 118 Query: 131 -----CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + A+ + D + ++AASI+AKV RDR + K + G D GY + K Sbjct: 119 KKRTGKEVKAMHRADVLKPVVSAASIVAKVERDREIEKIKK---ELGVDFGSGYASDKR 174 >gi|530464|emb|CAA83799.1| ribonuclease HII [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 114 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 66/114 (57%), Gaps = 1/114 (0%) Query: 39 GPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIH 97 GP+VVA++IL P+ I DSKK++ K R+ L+++I ++ + I S + +D+ N Sbjct: 1 GPLVVASVILKPDYFNPLIKDSKKLNPKTRQVLFDEIINNCLDYQIMIISSKQVDELNPL 60 Query: 98 KATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASI 151 +A+L + NL++ P ALIDG + ++IKGD + SIA +SI Sbjct: 61 QASLLGFKTTISNLKIXPDLALIDGNQNINLENIKTLSIIKGDDNNFSIACSSI 114 >gi|268559996|ref|XP_002637939.1| C. briggsae CBR-RNH-2 protein [Caenorhabditis briggsae] gi|187035517|emb|CAP25398.1| CBR-RNH-2 protein [Caenorhabditis briggsae AF16] Length = 297 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 65/189 (34%), Positives = 89/189 (47%), Gaps = 36/189 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAII--LDPNN--IPFGINDSKKISHKKREELYEKITSSAII 81 V GIDE GRG + GP+V AA I +D N G++DSK ++ KREE++EKI + I Sbjct: 23 VLGIDEAGRGPVLGPMVYAAAISPMDQNAELKALGVDDSKALNEAKREEIFEKINNDEEI 82 Query: 82 ------SISSASHQYIDKHNI--HKATLDAIYHAVE----------NLQVIPRSALIDG- 122 +I S S + I + HK +L+ + H N+ V+ G Sbjct: 83 QQIVAYAIRSLSPELISSSMLKRHKYSLNEVSHDAAIALIRDAFACNVNVVEIKVDTVGP 142 Query: 123 -----RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRD-RLMRIAHK----KYPDY 171 + P + V K DS+ ++AASI AKVTRD RL K K P+ Sbjct: 143 KATYQAKLERLFPGISICVTEKADSLFPIVSAASIAAKVTRDTRLRNWEFKEENIKVPEN 202 Query: 172 GFDSHVGYP 180 GF S GYP Sbjct: 203 GFGS--GYP 209 >gi|297517117|ref|ZP_06935503.1| ribonuclease HII [Escherichia coli OP50] Length = 69 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 39/55 (70%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKAL 66 >gi|313609082|gb|EFR84793.1| ribonuclease HII [Listeria monocytogenes FSL F2-208] Length = 110 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 65/100 (65%), Gaps = 2/100 (2%) Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 A++ LQ P LID ++P ++IKGD+ S+SIAAASIIAKVTRDRLM++ + Sbjct: 4 ALDQLQPEPDFVLID--AMPLKYTEAELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDE 61 Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 YP Y F +++GY T KH + G IHR++F P+++ Sbjct: 62 TYPGYDFANNMGYGTKKHLHGLDTIGICPIHRISFAPVKD 101 >gi|292656107|ref|YP_003536004.1| ribonuclease H II [Haloferax volcanii DS2] gi|291372875|gb|ADE05102.1| ribonuclease H II [Haloferax volcanii DS2] Length = 215 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 22/172 (12%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA- 86 G+DE G+G + GP+V AA+ DP+ +P GI DSK+++ ++REEL ++ IS+ A Sbjct: 4 GVDEAGKGPVLGPMVAAAVRGDPDALPDGIADSKRLAPERREELAAELRERDDISVGVAF 63 Query: 87 -SHQYID--KHNIHKATLDAIYHAVENLQVIPRSALID---------GRSIPEDLPCQAF 134 + ID + +++ T+ A A + V + D GR + E L Sbjct: 64 VEPETIDDPETDMNLLTVRAQVEAAAEVAVDADELVCDAGDVSESRFGRRVREGLAEAGV 123 Query: 135 AVI-----KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 +V + D + AASI+AKV RDR + +Y + G GYP+ Sbjct: 124 SVAVRAQHRADDEHAIVGAASIVAKVERDRRVEAIADEYGEVGS----GYPS 171 >gi|76801839|ref|YP_326847.1| ribonuclease HII [Natronomonas pharaonis DSM 2160] gi|115305552|sp|Q3IRF6|RNH2_NATPD RecName: Full=Ribonuclease HII; Short=RNase HII gi|76557704|emb|CAI49287.1| ribonuclease H II [Natronomonas pharaonis DSM 2160] Length = 212 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 95/199 (47%), Gaps = 32/199 (16%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M P+ G+DE G+G + G + VAA+ +P GI+DSK+++ +RE L +++ + I Sbjct: 1 MTPLVGVDEAGKGPVVGSMFVAAVRAPTEALPDGIDDSKRLTDDRREALADRLRDADRID 60 Query: 83 ISSASHQ--YIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA--VIK 138 ++ Q ID N++ T+ A A++ + + L D D+ FA V Sbjct: 61 VAVVECQPADIDDANMNDLTVAAHAAALDGVAASGETVLCDAG----DVDAGRFADRVAA 116 Query: 139 GDSISLSIA-------------AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT---- 181 ++ +S+A AASIIAK R+R + ++Y G GYP+ Sbjct: 117 AATLDVSVAAEHGADGSDDLVGAASIIAKSARERHVEQLSEQYGAVG----SGYPSDPTT 172 Query: 182 -AKHQQVIKEKG--PSCIH 197 A ++ +++G P C+ Sbjct: 173 KAFLREAFEQEGGFPPCVR 191 >gi|324575207|gb|ADY49933.1| Ribonuclease HII [Ascaris suum] Length = 60 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 38/58 (65%) Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++I ASI+AKV RD+ M KKYP YG++ H GY T H I++ GPS HRLT+ Sbjct: 1 MAIKLASIVAKVRRDKYMARLAKKYPHYGYEIHKGYGTKAHMAAIRKHGPSAAHRLTY 58 >gi|305663629|ref|YP_003859917.1| ribonuclease HII [Ignisphaera aggregans DSM 17230] gi|304378198|gb|ADM28037.1| ribonuclease HII [Ignisphaera aggregans DSM 17230] Length = 232 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 25/179 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKIT-SSAI 80 + GIDE GRG L G + +A I+++ + + + G+ DSK++S +KR + + I +S + Sbjct: 5 ICGIDEAGRGPLIGDMFIAMIVINTDALKYLENIGVRDSKRLSREKRIKFFPIIIENSEL 64 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAV-ENLQVI-------------PRSAL--IDGRS 124 + IS + +D+ NI+K L+ + + +++ ++ P L I+ Sbjct: 65 VLISRLTPSQLDEENINKLELNTVCRLIKKSISIVSTISEIYIDAFANPNKLLHYINSNC 124 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 I + + D+ + + AASI+AKV RD + K Y D+G GYP+ K Sbjct: 125 IASNRSINVYIEHGADNKYVVVGAASIVAKVLRDTHIDNLKKVYGDFG----SGYPSDK 179 >gi|269955973|ref|YP_003325762.1| Ribonuclease H [Xylanimonas cellulosilytica DSM 15894] gi|269304654|gb|ACZ30204.1| Ribonuclease H [Xylanimonas cellulosilytica DSM 15894] Length = 272 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 96/202 (47%), Gaps = 27/202 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRGALAGPV V +++D P G+ DSK ++ RE L ++ + + Sbjct: 34 VAGMDEVGRGALAGPVSVGVVVVDAATRTAPKGVADSKLLTPAAREALVPQLQRWPVAWA 93 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVI------------------PRSAL----- 119 + A ID H I A A A+ ++ + P++ L Sbjct: 94 VGHAGPAEIDAHGIIAALRIAGRRALSQVRRVCGDVDLVLLDGSHDWLTRPQADLFEAVE 153 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 +D PE P ++K D S+AAAS++AKV RD L+ ++YP Y +D + GY Sbjct: 154 LDVAGAPETDPT-VRTLVKADLQCASVAAASVLAKVERDLLLTRLARQYPAYAWDQNKGY 212 Query: 180 PTAKHQQVIKEKGPSCIHRLTF 201 H ++ G + HR ++ Sbjct: 213 SAPAHLDALRLHGTTPQHRRSW 234 >gi|327311983|ref|YP_004338880.1| ribonuclease HII [Thermoproteus uzoniensis 768-20] gi|326948462|gb|AEA13568.1| ribonuclease HII [Thermoproteus uzoniensis 768-20] Length = 203 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 85/177 (48%), Gaps = 34/177 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSA----- 79 VAGIDE GRG + GP+V+A + + + G+ DSK++S K RE LY I SA Sbjct: 3 VAGIDEAGRGPVVGPMVLAIVAGNEKALRALGVRDSKELSRKARERLYPLILKSAECVNY 62 Query: 80 ------IISISSASHQYIDKHNIHKATL----DAIYHAVENLQVIPRS-----ALIDGRS 124 +I +ASH+ A L DA + V++ P + + GR Sbjct: 63 VVLEPHVIDEWAASHKLNLLEAEEAAKLMRLCDADVYYVDSPDPKPERFSELLSRMSGRR 122 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + A+ K + + +AAASI+AKV RDRL+ + + D+G GYP+ Sbjct: 123 V--------VAMNKAERVP-QVAAASIVAKVVRDRLVDMLRSEMGDFGS----GYPS 166 >gi|328462264|gb|EGF34369.1| ribonuclease HII [Lactobacillus rhamnosus MTCC 5462] Length = 93 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 2/69 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DEVGRG LAGPVV AA+IL P+ + +NDSK+++ +R+ LY I + AI + I Sbjct: 7 VAGLDEVGRGPLAGPVVTAAVIL-PHQFKWPVNDSKQLTAHERDVLYPHILTEAIAVGIG 65 Query: 85 SASHQYIDK 93 A + ID+ Sbjct: 66 VADNHEIDR 74 >gi|124027720|ref|YP_001013040.1| ribonuclease HII [Hyperthermus butylicus DSM 5456] gi|189043606|sp|A2BL34|RNH2_HYPBU RecName: Full=Ribonuclease HII; Short=RNase HII gi|123978414|gb|ABM80695.1| ribonuclease HII [Hyperthermus butylicus DSM 5456] Length = 240 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 20/170 (11%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS----SA 79 GIDE GRG + GP+VV + + N+I G+ DSK+++ R +LY +I S Sbjct: 11 GIDEAGRGPVIGPMVVVGVAVCSNDIDKLVALGVRDSKQLTPVVRAKLYGEILRVALHSV 70 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC-------- 131 I+ + A ++ + + T + I + + P + +D PE L Sbjct: 71 IVKLPPALLDAVNLNQLEVETFEYIASRIAGVHDSPEAVYVDAVGSPEKLAARLSGRLGV 130 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + A D ++AASI+AKV RD +R+ + Y G GYPT Sbjct: 131 RVIAEPGADKTYPIVSAASIVAKVVRDAEIRMLRRLYGVRGS----GYPT 176 >gi|261886381|ref|ZP_06010420.1| ribonuclease HII [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 102 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 43/67 (64%) Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 ++K DS ++AASIIAKV+RDR MR K YPD+G+ H GY H + +K+ G + Sbjct: 26 TIVKADSSVPQVSAASIIAKVSRDRQMRRFDKIYPDFGYAKHKGYGVKAHIEALKQHGSN 85 Query: 195 CIHRLTF 201 + RL+F Sbjct: 86 ELTRLSF 92 >gi|219111921|ref|XP_002177712.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217410597|gb|EEC50526.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 393 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 35/187 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA--- 79 V GIDE GRG++ GP+V A +P + IP NDSK++S KR L KI Sbjct: 113 VVGIDEAGRGSILGPMVYGAAFWNPCDEDRIPNDFNDSKQLSEDKRAMLLHKIMYDTPEM 172 Query: 80 -----IISISSASHQYI--DKHNIHKATLDAIYHAVENL---QVIPRSALIDG------- 122 ++ S S + + +N+++ + DA +E+L V + ID Sbjct: 173 GFAVRVLHASEISRNMLRTESYNLNQMSHDAAAGIIEHLLEAGVQIGACFIDTVGNADHY 232 Query: 123 -RSIPEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLM------RIAHKKYPDYGFD 174 R + ++ P F V K D+ +A S++AK RDR+M ++ K+ P +G Sbjct: 233 KRRLQQEFPGIDFTVESKADAKYPPCSAGSVVAKNVRDRMMESFQYSEMSLKRDPKFG-- 290 Query: 175 SHVGYPT 181 GYP+ Sbjct: 291 --SGYPS 295 >gi|126459394|ref|YP_001055672.1| ribonuclease HII [Pyrobaculum calidifontis JCM 11548] gi|126249115|gb|ABO08206.1| RNase HII [Pyrobaculum calidifontis JCM 11548] Length = 207 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 24/172 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAIISIS 84 + G+DE GRG L GP+V+A ++ D + + G+ DSK +S RE ++ ++ A Sbjct: 16 IGGVDEAGRGPLVGPLVIAVVVGDSDVLLGVGVRDSKALSPGARERVFARVLEVA----E 71 Query: 85 SASHQYIDKHNIHKATLDAIYHAVE------NLQVIPRSA-LIDGRSIPEDLPCQAFAVI 137 ++ ++ H + T + +A+E L P +D + + A ++ Sbjct: 72 CVNYIVVEPHIVDMYTSKGLLNALEIDYTAKLLATCPADVYYVDSPDVKPERYGSALSMA 131 Query: 138 KGDSISL--------SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 G I +AAASI+AKV RDRL+ + ++ D+G GYP+ Sbjct: 132 TGKRIVALNKGERVPQVAAASIVAKVVRDRLIDLLKREVGDFGS----GYPS 179 >gi|119719808|ref|YP_920303.1| ribonuclease HII [Thermofilum pendens Hrk 5] gi|189043673|sp|A1RYM0|RNH2_THEPD RecName: Full=Ribonuclease HII; Short=RNase HII gi|119524928|gb|ABL78300.1| RNase HII [Thermofilum pendens Hrk 5] Length = 213 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 39/189 (20%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS 78 M VAGIDE GRG + GP+VVA ++ +P G+ DSK +S ++R + S Sbjct: 1 MGRVAGIDEAGRGPMLGPMVVAIVVCPEEKVPLLRNMGVRDSKALSPRRR-----LLLSR 55 Query: 79 AIISIS-SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG--------------- 122 AI S+ S + ++ I A Y + +L+ + LI+ Sbjct: 56 AIPSVGCSVKVRVVEPQEIDCAVRGECYENLNHLEAAVFAQLINEVLSEGELEVVYMDSP 115 Query: 123 RSIPEDLPCQAFAVIKG----------DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 +P + A++KG D + AASI+AK TRD ++ K Y D+G Sbjct: 116 DPVPSRFEERVRALLKGQVRIVAENGADEKYTIVGAASIVAKETRDEIINALKKTYGDFG 175 Query: 173 FDSHVGYPT 181 GYP+ Sbjct: 176 S----GYPS 180 >gi|5825611|gb|AAD53318.1|AF179372_1 ribonuclease HII [Trypanosoma brucei rhodesiense] Length = 377 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 1/69 (1%) Query: 136 VIKGDSISLSI-AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +I+GD SL+I AAAS +AKV+RD +M YP Y F + GYP H + +K+ G S Sbjct: 291 IIEGDKRSLTIIAAASCLAKVSRDEIMDYLDPLYPKYHFAENKGYPVDHHMRAVKKHGLS 350 Query: 195 CIHRLTFRP 203 IHR ++RP Sbjct: 351 SIHRRSYRP 359 Score = 42.0 bits (97), Expect = 0.054, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 13/69 (18%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDP-----NNI--------PFGINDSKKISHKK 67 K + G DE GRG LAGPVV AA+ P N++ F I DSK +S + Sbjct: 27 KETFLTIGCDEAGRGPLAGPVVGAAVCRIPRSSFNNDLKALYDADEEFQIFDSKSVSETQ 86 Query: 68 REELYEKIT 76 R+ +Y IT Sbjct: 87 RKVVYNNIT 95 >gi|257387378|ref|YP_003177151.1| ribonuclease HII [Halomicrobium mukohataei DSM 12286] gi|257169685|gb|ACV47444.1| ribonuclease HII [Halomicrobium mukohataei DSM 12286] Length = 210 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 19/168 (11%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87 G+DE G+G + G + AA+ DP ++P G+ DSK I ++RE L E I S A + ++ + Sbjct: 4 GVDEAGKGPVLGSMFAAAVRCDPGDLPDGVGDSKGIPDERRERLAEAIRSVAAVGLAEIT 63 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPR---SALID---------GRSIPE--DLPCQA 133 + ID TL HA E L + S L+D GR + + D Sbjct: 64 PERIDDPETDMNTLTVAAHA-EALSAVATDGLSGLVDAGDTDAERFGRRVADRVDSEIDL 122 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + D + AASI+AK R+ + ++ G GYP+ Sbjct: 123 GSAHGADETDPLVGAASIVAKSAREAHVAALADEFGAVG----SGYPS 166 >gi|118575753|ref|YP_875496.1| ribonuclease HII [Cenarchaeum symbiosum A] gi|189043576|sp|A0RV25|RNH2_CENSY RecName: Full=Ribonuclease HII; Short=RNase HII gi|118194274|gb|ABK77192.1| ribonuclease HII [Cenarchaeum symbiosum A] Length = 205 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 27/178 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-- 79 V G+DE GRG+L GP+V+A + + N + G+ DSKK++ K RE LY +I + A Sbjct: 3 VCGVDEAGRGSLVGPLVIAGVAIKRNRMRELKSMGVRDSKKLTRKARESLYPEIVNMADS 62 Query: 80 ---------IISISSASHQYIDKHNIHKA-TLDAIYHA---VENLQVIPRSALIDGRSIP 126 ++ S H D + A + + H V++ V PR G + Sbjct: 63 YHISRVPPGVVDRSVGRHMLNDLEARYMARVITRLGHGTTYVDSCDVNPRRF---GGRVS 119 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 E + + D + ++AASI+AKV RDR + K + D GYP+ + Sbjct: 120 EMSGRTVRSYHRADDRFVIVSAASILAKVARDRSIERLRKSH-----DVGSGYPSDRR 172 >gi|325067038|ref|ZP_08125711.1| putative ribonuclease H [Actinomyces oris K20] Length = 244 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 108/226 (47%), Gaps = 36/226 (15%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISH 65 RP LE + E + V G+DEVGRGALAGPV V I+ ++ P G+ DSK+++ Sbjct: 8 RPDRSLEKALLETYDY-VGGLDEVGRGALAGPVSVGLAIVARRTDDDFPEGLADSKQLTA 66 Query: 66 KKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQV---IPRSALID 121 + R L E + + +++ AS ID+H I A A A++ + PR ++D Sbjct: 67 RARTGLVEPVRGWLVDHAVAHASPAEIDEHGIVAALRMAGLRALQQVADRGHAPRIIILD 126 Query: 122 GRS------------------IPEDLPCQAFAV--------IKGDSISLSIAAASIIAKV 155 G + + E P A + +K D+ +AAAS++AKV Sbjct: 127 GVADWLTAAQPDLLTALEGAHVSETAPAPAEVLSTPPVHMEVKADARCAVVAAASVLAKV 186 Query: 156 TRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 RDRLM A P YG+ S+ GY + H + + G S HR ++ Sbjct: 187 ERDRLM--ADLDDPGYGWASNKGYASPAHVRGLTVLGASDQHRRSW 230 >gi|16082425|ref|NP_394911.1| ribonuclease HII [Thermoplasma acidophilum DSM 1728] gi|11387092|sp|P57673|RNH2_THEAC RecName: Full=Ribonuclease HII; Short=RNase HII gi|10640800|emb|CAC12578.1| probable ribonuclease HII [Thermoplasma acidophilum] Length = 212 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 37/177 (20%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAIISISS 85 GIDE GRG + GP+V++ + D + + + DSK ++ K+R EL+EKI + Sbjct: 8 CGIDEAGRGPVIGPMVISLVCCDLSFLKEIRVKDSKALTRKRRSELFEKI-------MGR 60 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL---PC----------- 131 S +Y +H L+ + A E+L I ++D +DL C Sbjct: 61 CSVRY---RILHPKDLNRMM-AAESLNKIEEDEIVDLLRYADDLVYIDCYDVIEERAQEI 116 Query: 132 -------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 Q K D+I +++AASI++KV RD + H ++ D+G GYP+ Sbjct: 117 IQMRSGRQVVCKHKADAIFPAVSAASIVSKVIRDAEIDRLHDRFGDFG----SGYPS 169 >gi|330831767|ref|XP_003291928.1| hypothetical protein DICPUDRAFT_11524 [Dictyostelium purpureum] gi|325077872|gb|EGC31557.1| hypothetical protein DICPUDRAFT_11524 [Dictyostelium purpureum] Length = 206 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 32/164 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII-- 81 IDE G+G+L GP+VV+ +++D G+ DSK++S KRE LY I+ +I Sbjct: 4 SIDEAGKGSLLGPLVVSCVVMDSKTEQLFKEQGVKDSKQLSPLKRESLYNLISEKSIYHQ 63 Query: 82 SISSASHQYIDK----HNIHKATLDAIYHAVEN----------LQVIPRSALIDGRSIPE 127 +I ++H IDK H +++ + Y +++ ++VI S I+ S Sbjct: 64 TIILSNHD-IDKRRSLHTLNEIETNIFYQLIKDSILNLAKNQPVKVILDS--IESNSEKY 120 Query: 128 DLP---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162 LP C+ K D S+ AASI+AKV RD+ ++ Sbjct: 121 SLPFKSYFGSPTCEIICETKADIKYTSVGAASILAKVKRDQFIK 164 >gi|156938224|ref|YP_001436020.1| RNase HII [Ignicoccus hospitalis KIN4/I] gi|156567208|gb|ABU82613.1| RNase HII [Ignicoccus hospitalis KIN4/I] Length = 215 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 20/171 (11%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA-I 80 VAGIDE GRG + G + VA + ++ + + G+ +SK ++ KR Y I +A + Sbjct: 6 VAGIDEAGRGPVIGSMFVALVAIEQDQLEKLVSLGLKESKMLTPNKRRYFYNLIMKTAKL 65 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVEN------LQVIPRSALIDG----RSIPEDLP 130 + I + IDK N+ + T++ + +E + V+ + +G R++ E P Sbjct: 66 VLIKEVKAEEIDKRNLSELTIEVMKELLETALNKVKIDVVCVDIVGNGAKQRRALGEVFP 125 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + KGD+ + AAASI+AK R+R + +Y D+G GYP+ Sbjct: 126 -DVIVMKKGDASCPAAAAASIVAKEARERHVSQLRARYGDFGS----GYPS 171 >gi|319789920|ref|YP_004151553.1| ribonuclease HIII [Thermovibrio ammonificans HB-1] gi|317114422|gb|ADU96912.1| ribonuclease HIII [Thermovibrio ammonificans HB-1] Length = 270 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 23/165 (13%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA 79 P G DE G+G GP+VVA I+ D I G+ DSKK+S++K EEL +IT + Sbjct: 72 LPRIGCDEAGKGEFVGPLVVACIVADEKCLKRLIELGVKDSKKLSNEKVEELASEITETC 131 Query: 80 -----IISISSASHQYIDKHNIHKATLDAIYHA-VENL--QVIPRSALIDGRSIPEDLPC 131 ++ + Y NI++ L+A+Y V +L + P+ ++D S + Sbjct: 132 HGKVKLLIPEKYNRAYSKFKNINR-LLEAVYREIVSDLCEKFSPKVVVVDKFSNRAEEVL 190 Query: 132 QAFAVIKGDSIS--------LSIAAASIIAKVTRDRLMRIAHKKY 168 + V+KG + L++AAASI+AK R + M+ K++ Sbjct: 191 K--DVVKGARLEVRPKAEDDLAVAAASIVAKAVRLKTMKELEKRF 233 >gi|257052068|ref|YP_003129901.1| ribonuclease HII [Halorhabdus utahensis DSM 12940] gi|256690831|gb|ACV11168.1| ribonuclease HII [Halorhabdus utahensis DSM 12940] Length = 234 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 92/206 (44%), Gaps = 33/206 (16%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG+DE G+G + G + A ++ DP ++P ++DSK +S ++REEL I A +++S Sbjct: 25 AGVDEAGKGPVLGSMFAACVVADPADLPDDVDDSKDLSAERREELATVIRDRAHAVAVSE 84 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL---IDGRS-------------IPEDL 129 ID TL + HA E L+ + L +D I DL Sbjct: 85 IPVARIDDTETDMNTLTVVAHA-EALEPVASDGLATYLDAGDTNAVRFERRVADRIEADL 143 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP---TAKH-- 184 +A D+ + AASIIAKV RD + +Y D G GYP T + Sbjct: 144 DLRAEH--GADAAYPIVGAASIIAKVERDAHVAELAAEYGDLG----SGYPGDSTTRDFL 197 Query: 185 QQVIKEKG--PSCIHR--LTFRPLRN 206 + I E G P+C T R +RN Sbjct: 198 EDYIAEHGELPACARESWQTSRDVRN 223 >gi|289704584|ref|ZP_06501017.1| ribonuclease HII [Micrococcus luteus SK58] gi|289558704|gb|EFD51962.1| ribonuclease HII [Micrococcus luteus SK58] Length = 250 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 97/198 (48%), Gaps = 23/198 (11%) Query: 26 VAGIDEVGRGALAGPVVV---AAIILDPNNIPFGINDSKKISHKKREELYEKITS-SAII 81 VAG+DEVGRGALAGPVVV A + IP + DSK ++ ++R L +I +A + Sbjct: 37 VAGMDEVGRGALAGPVVVGVCAVWLPAAGQIPP-VRDSKALTDRRRRVLIPQIEDWAAGV 95 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVI----PRSALIDGRS------------- 124 ++ A ID I A A A L P + ++DGR Sbjct: 96 ALGEAGPAEIDALGISAALGLAGRRAWAALCAAVGQEPVALVLDGRDDWLSRSDPDAGPA 155 Query: 125 -IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 P LP + +++ + ++AAASI AKV RD +M +P YG+ + GY +A Sbjct: 156 PAPRPLPPEPTMLVRAEDRCATVAAASIAAKVARDDVMIALDAAHPGYGWAGNKGYGSAA 215 Query: 184 HQQVIKEKGPSCIHRLTF 201 H+ + E+G S HR ++ Sbjct: 216 HRAALAERGASEQHRRSW 233 >gi|17536263|ref|NP_495796.1| RNase H family member (rnh-2) [Caenorhabditis elegans] gi|11387113|sp|Q9U6P6|RNH2A_CAEEL RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=RNase H(35); AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|6010657|gb|AAF01208.1|AF181619_1 putative ribonuclease H2 large subunit [Caenorhabditis elegans] gi|15718212|emb|CAC70103.1| C. elegans protein T13H5.7, confirmed by transcript evidence [Caenorhabditis elegans] Length = 297 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 65/191 (34%), Positives = 91/191 (47%), Gaps = 40/191 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAII--LDPN----NIPFGINDSKKISHKKREELYEKIT--- 76 V GIDE GRG + GP+V AA I LD N N+ G++DSK ++ KREE++ K+ Sbjct: 23 VLGIDEAGRGPVLGPMVYAAAISPLDQNVELKNL--GVDDSKALNEAKREEIFNKMNEDE 80 Query: 77 -------------SSAIISISSASHQYIDKHNI-HKATLDAIYHAVE-NLQVIPRSALID 121 S +IS S Q + + H+A + I A+ N+ V+ Sbjct: 81 DIQQIIAYALRCLSPELISCSMLKRQKYSLNEVSHEAAITLIRDALACNVNVVEIKVDTV 140 Query: 122 G------RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRD-RL----MRIAHKKYP 169 G + + P + V K DS+ ++AASI AKVTRD RL R + K P Sbjct: 141 GPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDSRLRNWQFREKNIKVP 200 Query: 170 DYGFDSHVGYP 180 D G+ S GYP Sbjct: 201 DAGYGS--GYP 209 >gi|224097610|ref|XP_002311009.1| predicted protein [Populus trichocarpa] gi|222850829|gb|EEE88376.1| predicted protein [Populus trichocarpa] Length = 297 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 25/162 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG + GP+V + + DSK + +KREEL+EK+ ++ +I Sbjct: 16 IMGIDEAGRGPVLGPMVYGCLYCARSYEKTLSTLKFADSKTLKEEKREELFEKLKANELI 75 Query: 82 SIS---------SASHQYIDKHNIHKATLDA---IYHAVENLQVIPRSALIDGRSIPED- 128 + SA K N+++ + D+ + V N+ V+ +D PE Sbjct: 76 GWAVDVIDPRELSAKMLKKIKINLNEISHDSASGLVTRVLNMGVLLTDVYVDTVGDPEKY 135 Query: 129 -------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMR 162 P F V K DS+ ++ ASI+AKVTRDR +R Sbjct: 136 RIKLSERFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALR 177 >gi|124486303|ref|YP_001030919.1| ribonuclease HII [Methanocorpusculum labreanum Z] gi|189043623|sp|A2STJ6|RNH2_METLZ RecName: Full=Ribonuclease HII; Short=RNase HII gi|124363844|gb|ABN07652.1| RNase HII [Methanocorpusculum labreanum Z] Length = 212 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 24/193 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-DPNNIP-FGINDSKKISHKKREELYEKITSSAIISI 83 + G+DE G+G + GP++ A +++ D + + GI DSKK+S KKRE L+E+IT S Sbjct: 3 ICGVDEAGKGPVLGPMITAGVLVSDMSELEMLGIKDSKKLSPKKRESLFEEITFSWKTYT 62 Query: 84 SSASHQYIDKHNIHKATLDAIYHA--VENLQ---VIPRSALIDGRSIPEDL------PCQ 132 + ID A HA V L V + ++ + E++ Sbjct: 63 VVRTPFDIDSREGTMNAFTASCHADVVRALCADFVYLDACDVNAKRFGENVLRLSGSSAH 122 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-----AKHQQV 187 + K D+ + AASI+AKVTRDR + ++Y + G GYP+ + + Sbjct: 123 VCSEHKADAKYAVVGAASIVAKVTRDRCIADLKEEYGEIG----SGYPSDPATISFLTEY 178 Query: 188 IKEKG--PSCIHR 198 I+ +G P C R Sbjct: 179 IRTRGEVPLCARR 191 >gi|308509890|ref|XP_003117128.1| CRE-RNH-2 protein [Caenorhabditis remanei] gi|308242042|gb|EFO85994.1| CRE-RNH-2 protein [Caenorhabditis remanei] Length = 323 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 89/189 (47%), Gaps = 36/189 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAII--LDPNN--IPFGINDSKKISHKKREELYEKITSSAII 81 V GIDE GRG + GP+V AA I LD N G++DSK ++ KREE+++K+ + I Sbjct: 49 VLGIDEAGRGPVLGPMVYAAAISPLDQNTELKNLGVDDSKALNEAKREEIFDKMNNDEEI 108 Query: 82 ------SISSASHQYIDKHNI--HKATLDAIYHAVE----------NLQVIPRSALIDG- 122 +I S S + I + HK +L+ + H N+ V+ G Sbjct: 109 QQVVAYAIRSLSPELISASMLKRHKYSLNEVSHDAAIALIKDAFACNVNVVEIKVDTVGP 168 Query: 123 -----RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKK-----YPDY 171 + + P + V K DS+ ++AASI AKVTRD +R K P+ Sbjct: 169 KATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDTRLRNWQFKEKGIRIPEN 228 Query: 172 GFDSHVGYP 180 G+ S GYP Sbjct: 229 GYGS--GYP 235 >gi|295132558|ref|YP_003583234.1| ribonuclease HII [Zunongwangia profunda SM-A87] gi|294980573|gb|ADF51038.1| ribonuclease HII [Zunongwangia profunda SM-A87] Length = 73 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 40/59 (67%) Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +SIA ASI+AK RD M I H++YP Y + + GYPT +H++ I++ G + HR +F+ Sbjct: 1 MSIATASILAKTYRDEYMEIIHEEYPIYNWKKNKGYPTKEHREAIRKYGITKYHRKSFK 59 >gi|301100786|ref|XP_002899482.1| ribonuclease H2 subunit A, putative [Phytophthora infestans T30-4] gi|262103790|gb|EEY61842.1| ribonuclease H2 subunit A, putative [Phytophthora infestans T30-4] Length = 791 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 112/244 (45%), Gaps = 54/244 (22%) Query: 6 IPERPHFELEAMVREK------NMWPVA-GIDEVGRGALAGPVVVAA----IILDPNNIP 54 +P+RP+ + ++ N PV GIDE GRG + GP+V A + ++ Sbjct: 1 MPDRPNLQRTLLLASDCPASCLNGVPVMLGIDEAGRGPVMGPMVYGAAYWPVAVNDAMCA 60 Query: 55 FGINDSKKISHKKREELYEKITSSA----IISISSASHQYIDK-----HNIHKATLDA-- 103 G +DSK +S + R +L+EK+ S+ I+ + SA+ + DK N+++ + DA Sbjct: 61 LGFDDSKALSAESRAQLFEKMQSTEGLGWIVRLISAA-EISDKMQRQTSNLNEMSRDAAI 119 Query: 104 -IYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI------------KGDSISLSIAAAS 150 + + V+N + + +D P Q+F K DS+ ++AAS Sbjct: 120 QLINEVQNKGAVVKKVFVDTVGDPRWY--QSFLTKHFNGTIEFRVEKKADSLFKVVSAAS 177 Query: 151 IIAKVTRDRLMRIAHKKYP--DYGFDSHVGYPTAK--------HQQVIKEKGP------S 194 I AKVTRDR++ + P + D GYP+ +++ +K + P Sbjct: 178 IAAKVTRDRVISDWMWESPALELPTDFGSGYPSDPNWGTVEPFNEKAVKVEWPHDKDLEK 237 Query: 195 CIHR 198 C+HR Sbjct: 238 CLHR 241 >gi|159467162|ref|XP_001691767.1| predicted protein [Chlamydomonas reinhardtii] gi|158279113|gb|EDP04875.1| predicted protein [Chlamydomonas reinhardtii] Length = 266 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 90/193 (46%), Gaps = 29/193 (15%) Query: 14 LEAMVREKNMWPVA----GIDEVGRGALAGPVVVAAII--LDPNNIPFGINDSKKISHKK 67 L + +R W A G+DE GRG + GP+V A + + G DSK ++H+ Sbjct: 21 LVSQLRTGEEWTKAPCILGVDEAGRGPVLGPMVYACAFTSVSTDISSRGYADSKTLTHET 80 Query: 68 REELYEKITSSAIISISS--ASHQYIDKHNI--HKATLDAIYHAVENLQVIPRSALIDGR 123 RE+L++ I + + + + S Q+I H + K +L+A+ A + I R AL G Sbjct: 81 REKLFKAIDADSGVGWVAHIMSAQFISGHMLGRDKTSLNAL--AFDATCAIIRRALESGA 138 Query: 124 SIPED---------------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 ++ D P F V K DS+ ++AASI+AKV RD+ + + K Sbjct: 139 NVYVDTVGDADRHRDRLSRAFPGLDFTVCPKADSLYPIVSAASIVAKVIRDKSLTDSQKS 198 Query: 168 YPDYGFDSHVGYP 180 G + GYP Sbjct: 199 LGLTG-EVGTGYP 210 >gi|254167831|ref|ZP_04874680.1| ribonuclease HII [Aciduliprofundum boonei T469] gi|289596631|ref|YP_003483327.1| ribonuclease HII [Aciduliprofundum boonei T469] gi|197623122|gb|EDY35688.1| ribonuclease HII [Aciduliprofundum boonei T469] gi|289534418|gb|ADD08765.1| ribonuclease HII [Aciduliprofundum boonei T469] Length = 212 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 19/179 (10%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKI--TSSAIISIS 84 G+DE GRG + GP+VVA + + + I + DSKK+S K+RE L E+I +S I+ I Sbjct: 4 GVDEAGRGPVIGPLVVAGVCGEESKIASLRVKDSKKLSPKRRERLAEEIKKVASKIVVIK 63 Query: 85 SASHQ---YIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLP------CQ 132 + +K +++ ++ + L +V +A ++ E++ + Sbjct: 64 IEPEEIDALREKMTLNEIEVELFARVISQLNGDKVYVDAADVNEDRFAEEIKKKLGKDVE 123 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + K DS ++AASIIAKV RDR++ K+ ++G GYP + + EK Sbjct: 124 IISEHKADSKYPMVSAASIIAKVERDRIINELKKELGEFG----SGYPADERTKRFLEK 178 >gi|321262130|ref|XP_003195784.1| ribonuclease HI large subunit [Cryptococcus gattii WM276] gi|317462258|gb|ADV23997.1| Ribonuclease HI large subunit, putative [Cryptococcus gattii WM276] Length = 260 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 76/161 (47%), Gaps = 25/161 (15%) Query: 26 VAGIDEVGRGALAGPVVVAA----IILDPNNIPFGINDSKKISHKKREELYE--KITSSA 79 + GIDE GRG + GP+V AA + P G +DSK +S + R+ L+E ++ S Sbjct: 38 IMGIDEAGRGPVLGPMVYAAAYCPLSFKPTLESIGFDDSKALSAETRQRLWETFEVHSPL 97 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED----------- 128 S S+ S Q I + K ++ A ++ + ++AL G ++ E Sbjct: 98 CYSSSTLSPQDISSSMLRKVPINLNRQAEDSTVGLIQAALNRGINVTECYVDALGPAPQW 157 Query: 129 -------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLM 161 P F V K DS+ + AASI+AKVTRDR + Sbjct: 158 QARLTAIFPTIKFTVCPKADSLFKIVGAASIVAKVTRDRYV 198 >gi|15679041|ref|NP_276158.1| ribonuclease HII [Methanothermobacter thermautotrophicus str. Delta H] gi|7227913|sp|O27102|RNH2_METTH RecName: Full=Ribonuclease HII; Short=RNase HII gi|2622126|gb|AAB85519.1| ribonuclease HII [Methanothermobacter thermautotrophicus str. Delta H] Length = 206 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 81/173 (46%), Gaps = 18/173 (10%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 V GIDE GRG + GP+VVA +++ G+ DSKK++ ++R L KI A + Sbjct: 3 VLGIDEAGRGPVIGPLVVAGVMIPERKFSILRKMGVKDSKKLTPERRRFLARKIRRIARV 62 Query: 82 SISSASHQYIDKHNIHKATLDAIYH-AVENL--QVIPRSALIDGRSI-PEDLPCQA---F 134 S ID+ L+ I A++ + + P +ID + PE L + F Sbjct: 63 FTVKISASDIDRMRERGFNLNEIEKIAIKRIIPEAQPDRVIIDSVDVKPERLEEEIRSHF 122 Query: 135 AVIK------GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 I+ D+ +AAASIIAKV RD + KK G D GYP+ Sbjct: 123 GEIEVTAEHGADTRYYPVAAASIIAKVERDLEIESIQKKNRKLG-DIGSGYPS 174 >gi|298674468|ref|YP_003726218.1| ribonuclease HII [Methanohalobium evestigatum Z-7303] gi|298287456|gb|ADI73422.1| ribonuclease HII [Methanohalobium evestigatum Z-7303] Length = 218 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 56/195 (28%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 VAGIDE G+G + G + +A +++D I G+ DSKKIS +KREEL KI Sbjct: 3 VAGIDEAGKGPVIGSMCIAGVVVDEAKINSLKNLGVTDSKKISPRKREELAHKI------ 56 Query: 82 SISSASHQYIDKHNIHKAT---LDAIYH--------------AVENLQVIPRSALIDGRS 124 +Y+D + I + T +D + + VENL P +D Sbjct: 57 ------KKYVDNYFIFEITPSQIDELRNVMSMNDIMVLGFSRVVENLN--PELVYVDSAD 108 Query: 125 I-PEDL--------------PCQAFAVI---KGDSISLSIAAASIIAKVTRDRLMRIAHK 166 + PE + +I + D + ++AASIIAKV RD L+ + Sbjct: 109 VKPERFAEKIRSEYSKSNKTASENIKIISEHEADVVYSVVSAASIIAKVRRDELV---NN 165 Query: 167 KYPDYGFDSHVGYPT 181 ++G D GYP+ Sbjct: 166 LKEEFGVDFGSGYPS 180 >gi|294891483|ref|XP_002773596.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC 50983] gi|239878780|gb|EER05412.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC 50983] Length = 339 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 83/188 (44%), Gaps = 41/188 (21%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA---- 79 GIDE GRG + GP+V A I D G NDSK+++ KR EL+E I + A Sbjct: 57 GIDEAGRGPVFGPMVYGAAISDIRKSDALGKMGFNDSKQLTEAKRSELFEDIHNEALKDD 116 Query: 80 --------IISISSASHQYIDKHNI------HKATLDAIYHAV-ENLQVIPRSALIDGRS 124 +++ S + + ++ + H+ + I HA+ E + V + +D Sbjct: 117 GVLGFAVHVLTAHEISTKMLRRNKVNLNRISHETAIGLIEHALSEGINV--KEVYVDTVG 174 Query: 125 IPEDLPCQAFAVIK------------GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 PE + ++ K D+I +AASI AKV RDRL+ YP+ G Sbjct: 175 DPERYQNKLSSIFKRRGVDTIVVCKKADAIYPICSAASICAKVIRDRLVEEDISYYPEVG 234 Query: 173 FDSHVGYP 180 GYP Sbjct: 235 ----SGYP 238 >gi|296108883|ref|YP_003615832.1| ribonuclease HII [Methanocaldococcus infernus ME] gi|295433697|gb|ADG12868.1| ribonuclease HII [Methanocaldococcus infernus ME] Length = 223 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 36/179 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87 G+DE GRG + GP+VV A + DSKK+S +KRE+L +++ I I S Sbjct: 4 GVDEAGRGPVIGPLVVCAYASEEE---IEAEDSKKLSKEKREKLRKELEKKGIFEIVKVS 60 Query: 88 HQYIDK----HNIHKATLDAIYHAVENL--------------------QVIPRSALIDGR 123 + +++ N+++ ++ A++NL + R L R Sbjct: 61 AEELNRLMKSKNLNEIEVELFAKAIKNLIEKHNLKDVEIYVDSCSPNREKFKRKLLSKLR 120 Query: 124 SIP-EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + +DL + K D ++AASIIAK RDR + K Y D+G GYP+ Sbjct: 121 GLSIKDLIVEH----KADEKYKVVSAASIIAKTERDREIEELKKIYGDFG----SGYPS 171 >gi|150399435|ref|YP_001323202.1| ribonuclease HII [Methanococcus vannielii SB] gi|189043627|sp|A6UQ18|RNH2_METVS RecName: Full=Ribonuclease HII; Short=RNase HII gi|150012138|gb|ABR54590.1| ribonuclease HII [Methanococcus vannielii SB] Length = 244 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 26/177 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS---- 77 + G+DE GRG + GP+V++ + + ++ + DSK+++ K+REE Y I Sbjct: 25 ILGLDEAGRGPVLGPMVISVVKVTEKDLDKINSLDLKDSKQLTKKRREEYYNIINECFEV 84 Query: 78 SAIISISSASHQYIDKHNIHKATLDAI-------YHAVENLQVI-------PRSALIDGR 123 I+ +Y+ N++K L A EN+++ +S L + Sbjct: 85 QKIVLAPEKIDEYMKTSNLNKIELSAFSKLSNHFLKEYENVKIFIDACSSSEQSFLNQFK 144 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + + + A K D ++AASIIAKVTRD ++ +++ D G GYP Sbjct: 145 AKLINKKVEIIAEHKADEKYKIVSAASIIAKVTRDNIIESYKEEFGDIG----SGYP 197 >gi|322372194|ref|ZP_08046735.1| ribonuclease HII [Haladaptatus paucihalophilus DX253] gi|320548203|gb|EFW89876.1| ribonuclease HII [Haladaptatus paucihalophilus DX253] Length = 212 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 22/171 (12%) Query: 28 GIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 G+DE GRG + G + AA+ I DP+++P GI+DSK +S ++REEL + + +++ A Sbjct: 3 GVDEAGRGPVLGSMFAAAVAIDDPDDLPDGIDDSKNLSPERREELAAALRADEAVAVGVA 62 Query: 87 --SHQYIDKHNIHKATLDAIYH--AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + ID TL H A+ + ++D E + A G I Sbjct: 63 EITTTRIDDPETDMNTLTVAAHGEAISRIVSGGERGIVDACDTSESRFARRVAAAVGPEI 122 Query: 143 SLS-----------IAAASIIAKVTRD-RLMRIAHKKYPDYGFDSHVGYPT 181 ++ + AASI+AKV RD + R+A + G S GYP+ Sbjct: 123 TVEAEHGADETHAIVGAASIVAKVERDAHVARLAEQH---GGVGS--GYPS 168 >gi|237752170|ref|ZP_04582650.1| rnase [Helicobacter winghamensis ATCC BAA-430] gi|229376412|gb|EEO26503.1| rnase [Helicobacter winghamensis ATCC BAA-430] Length = 161 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 68/153 (44%), Gaps = 4/153 (2%) Query: 50 PNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVE 109 P ++ + DSK +S KKR+ L + A I ID + +A+ E Sbjct: 7 PESLKNSLRDSKTLSQKKRDALANILKDYATFKIIKKEANEIDTKGLSACIKEAL---QE 63 Query: 110 NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 L I I + +P + KGDS +I+AASI+AK +D M H YP Sbjct: 64 ILSTIYAPFYIFDGNCNFKIP-HLKTLTKGDSKLHTISAASILAKSAKDAEMLEFHALYP 122 Query: 170 DYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 Y F + GY T H Q I G S IHR ++R Sbjct: 123 HYDFARNKGYGTKAHIQAIATHGLSPIHRKSYR 155 >gi|266625485|ref|ZP_06118420.1| ribonuclease HII [Clostridium hathewayi DSM 13479] gi|288862611|gb|EFC94909.1| ribonuclease HII [Clostridium hathewayi DSM 13479] Length = 78 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/47 (59%), Positives = 34/47 (72%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 V GIDE GRG LAGPVV A+IL + +NDSKK+S K+REEL+ Sbjct: 32 VCGIDEAGRGPLAGPVVAGAVILPGDCEILFLNDSKKLSEKRREELF 78 >gi|307595739|ref|YP_003902056.1| ribonuclease HII [Vulcanisaeta distributa DSM 14429] gi|307550940|gb|ADN51005.1| ribonuclease HII [Vulcanisaeta distributa DSM 14429] Length = 218 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 83/188 (44%), Gaps = 48/188 (25%) Query: 26 VAGIDEVGRGALAGPVVVA-AIILDPNNI-PFGINDSKKISHKKREELYEKITSSAIISI 83 V GIDE GRG + GP+V+A A+ D N + GI DSK++S R L+ SI Sbjct: 5 VGGIDEAGRGPVIGPMVMAIAVTNDMNRLKAMGIRDSKELSPAGRARLF---------SI 55 Query: 84 SSASHQYIDKHNIHKATLDA-IYHAVENL---------------QVIPRSALIDGRSIPE 127 ++ YID + +D +Y N+ V P+ ID P+ Sbjct: 56 LKSTLNYIDYEIVEPRVIDNYVYMNALNILEVEIAIKLINRALNSVSPQVVYIDS---PD 112 Query: 128 DLP--------------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 P + A+ D + ++AASI+AKV RD ++ H++Y D+G Sbjct: 113 PRPERYRDMVKRGVVGNVEVVAMNNADKLIPVVSAASIVAKVIRDSIIEELHREYGDFGS 172 Query: 174 DSHVGYPT 181 GYP+ Sbjct: 173 ----GYPS 176 >gi|331234733|ref|XP_003330025.1| ribonuclease HI large subunit [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309309015|gb|EFP85606.1| ribonuclease HI large subunit [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 349 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 85/191 (44%), Gaps = 37/191 (19%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-----DPNNIPFGINDSKKISHKK 67 E E ++ N W + GIDE GRG + GP+V A + + G DSK ++H++ Sbjct: 58 EEEEQLKRDN-W-IMGIDEAGRGPVLGPMVYGAAFCTQAFAEDKLLDLGFADSKTLTHRR 115 Query: 68 REELYEKI--------------------TSSAIISISSASHQYIDKHNIHKATLDAIYHA 107 REEL E I T + I + Y AT + I HA Sbjct: 116 REELLEMIVHPPADQPLNERVEWNVKVLTPADISQGMNRRSPYNLNAQAFDATCEIIQHA 175 Query: 108 VE---NLQVIPRSALIDGRS----IPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDR 159 ++ NLQ I L ++ + + P F V K DSI + AAS++AKVTRD Sbjct: 176 LDLQYNLQHIYVDTLGPPKTHQMKLEQSFPGIKFTVCSKADSIYPIVGAASVVAKVTRDA 235 Query: 160 LMRIAHKKYPD 170 + ++H +P+ Sbjct: 236 I--VSHWIHPE 244 >gi|302348278|ref|YP_003815916.1| Ribonuclease HII [Acidilobus saccharovorans 345-15] gi|302328690|gb|ADL18885.1| Ribonuclease HII [Acidilobus saccharovorans 345-15] Length = 223 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 23/176 (13%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA 79 W + G+DE GRG+L G +++A N+ G+ DSK+++ RE LY I Sbjct: 3 W-IIGVDEAGRGSLVGELMLACFATKEENLGLLKDMGVRDSKQLTPHSRETLYRSIVRLG 61 Query: 80 IISISSASHQYIDKHNIH----KATLDAIYHAVENLQ-VIPRSALIDG----RSIPEDLP 130 + ID+ N++ +A L + + L+ + ++ ID R +P +L Sbjct: 62 EFVVVPIPPAEIDRENVNVLEERAALKGLKVLLSRLRPELVKAIYIDKFGELRILPGELK 121 Query: 131 CQAF---AVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 F V+ K D+ + ++AASIIAKV RDR + + Y G GYP+ Sbjct: 122 RLGFRGRLVVEPKADANYVVVSAASIIAKVIRDRRIEVLRSMYGVEG----SGYPS 173 >gi|304315158|ref|YP_003850305.1| ribonuclease HII [Methanothermobacter marburgensis str. Marburg] gi|302588617|gb|ADL58992.1| ribonuclease HII [Methanothermobacter marburgensis str. Marburg] Length = 207 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 83/175 (47%), Gaps = 22/175 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 V GIDE GRG + GP+VVA +++ GI DSKK++ ++R+ L KI + + Sbjct: 3 VLGIDEAGRGPVIGPLVVAGVMVPERKFSILRKMGIRDSKKLTPERRKFLARKIRRISRV 62 Query: 82 SISSASHQYIDK-----HNIHKATLDAIYHAVENLQVIPRSALIDGRSI-PEDLPCQA-- 133 S ID+ N+++ AI + Q P S +ID + PE L + Sbjct: 63 FTVKISASDIDRMREKGFNLNEIEKIAIKRIIAEAQ--PDSVIIDSVDVKPERLTEEIRS 120 Query: 134 -FAVIK------GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 F I+ D+ +AAASIIAKV RD + K+ G D GYP+ Sbjct: 121 HFGDIEVKAEHGADAKYYPVAAASIIAKVERDLEIERIQKRNRKLG-DIGSGYPS 174 >gi|145636491|ref|ZP_01792159.1| ribonuclease HII [Haemophilus influenzae PittHH] gi|145270316|gb|EDK10251.1| ribonuclease HII [Haemophilus influenzae PittHH] Length = 57 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 28/43 (65%), Positives = 34/43 (79%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKR 53 >gi|315427583|dbj|BAJ49182.1| ribonuclease HII [Candidatus Caldiarchaeum subterraneum] Length = 212 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 102/211 (48%), Gaps = 37/211 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + G+DE GRG + GP+VVAA+ + + +P G+ DSK +S ++REE++EK+ +S + Sbjct: 2 LCGVDEAGRGCVVGPLVVAAVAAERDELPLLRALGVADSKTLSPRRREEIFEKLRASFRV 61 Query: 82 SISSASHQYID---KHNIHKATLDAIYHAVENL--QVIPR---------------SALID 121 S + I + N D Y + L PR L++ Sbjct: 62 GYMLVSPRRISSCLRVNGGDGLNDLEYGVMAELARSFRPRILFVDSPDRDVRRARRRLLE 121 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + D+ C +++GD + +AAAS++AKV RDR + + ++ D+G GYP+ Sbjct: 122 KLGVEMDVRC----MVRGDRRHVLVAAASVVAKVVRDRKVAMLRRRLGDFG----SGYPS 173 Query: 182 --AKHQQVIKEKGPSCIH---RLTFRPLRNL 207 + +++ G + I R+ + L NL Sbjct: 174 DPKTRKWLLENLGQAAIKPYIRVGWATLENL 204 >gi|312137140|ref|YP_004004477.1| rnase hii [Methanothermus fervidus DSM 2088] gi|311224859|gb|ADP77715.1| RNase HII [Methanothermus fervidus DSM 2088] Length = 200 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 20/171 (11%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDE GRG + GP++V +++D N + DSK +S ++R+ L ++I + I Sbjct: 3 ILGIDEAGRGPVLGPLIVCGVLVDDENKLKKLNVRDSKLLSPRRRKILAKEIKKVSKCFI 62 Query: 84 SSASHQYIDKHNIHKATLD-----AIYHAVENLQVIPRSALIDG-----RSIPEDLPCQA 133 IDK I +L+ A+ ++N P+ ++D + + + L + Sbjct: 63 VKIQAYEIDKLRIAGISLNEIERIAMSKIIKNAN--PKKVIVDSIDIKPKRLKKKLQKEN 120 Query: 134 FAVI---KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 VI K D ++AASI+AKV RD + K+ Y D GYP Sbjct: 121 IEVIVEHKADEKYPVVSAASIVAKVERDSEIEKLKKR---YNCDLGSGYPN 168 >gi|227497524|ref|ZP_03927752.1| possible ribonuclease H [Actinomyces urogenitalis DSM 15434] gi|226833027|gb|EEH65410.1| possible ribonuclease H [Actinomyces urogenitalis DSM 15434] Length = 253 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 4/66 (6%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISH 65 RP ELE + + VAG+DEVGRGALAGPV V ++D P++ P G+ DSK++S Sbjct: 12 RPDRELETTLLASHR-VVAGMDEVGRGALAGPVSVGVALVDTTTPDHFPHGLADSKQLSP 70 Query: 66 KKREEL 71 +RE L Sbjct: 71 TRREAL 76 >gi|328849346|gb|EGF98528.1| hypothetical protein MELLADRAFT_46031 [Melampsora larici-populina 98AG31] Length = 279 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 26/161 (16%) Query: 28 GIDEVGRGALAGPVVVAA----IILDPNNIPFGINDSKKISHKKREELYEKITSSA---- 79 GIDE GRG + GP+V AA + G DSK ++H+KR L+E I S+ Sbjct: 2 GIDEAGRGPVLGPMVYAASFCPVDFSEELKSLGFADSKTLTHQKRCNLFESIVQSSGKIQ 61 Query: 80 ----IISISSASHQYIDK--HNIHKATLDA---IYHAVENLQVIPRSALIDGRSIPED-- 128 ++S S S + +N++ DA I A + Q I + +D P+ Sbjct: 62 WNVKVMSPSDISMGMSRRSPYNLNAQAFDATVQIIQAALDHQYILQHIYVDTLGPPKTHQ 121 Query: 129 ------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMR 162 P F V K DSI ++AASI+AKVTRD ++ Sbjct: 122 LNLQKAFPNLHFTVCSKADSIYPIVSAASIVAKVTRDAIVE 162 >gi|313125351|ref|YP_004035615.1| rnase hii [Halogeometricum borinquense DSM 11551] gi|312291716|gb|ADQ66176.1| RNase HII [Halogeometricum borinquense DSM 11551] Length = 224 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 25/175 (14%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87 G DE G+G + GP+V AA+ + +P GI+DSK+++ +REE+ + + +++ A+ Sbjct: 10 GSDEAGKGPVLGPMVAAAVRAPADALPDGIDDSKRLTSAQREEIDQTLRGRDDVTVGVAT 69 Query: 88 HQYIDKHNIHKATLD------------AIYHAVENLQVIPRSALID----GRSIPEDLPC 131 ID I T D A + +V+ + +D GR + + Sbjct: 70 ---IDPVRIDDPTTDMNSLTVAAHVAAVAAVAQDADEVVTDAGDVDESRFGRRVRTGVGD 126 Query: 132 QAFAVI-----KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + V + D + AAS++AKV RD LM ++Y DYG GYP+ Sbjct: 127 EGTDVTVVSEHRADETYPHVGAASVVAKVRRDTLMETIGERYEDYGP-VGSGYPS 180 >gi|268324099|emb|CBH37687.1| ribonuclease HII [uncultured archaeon] gi|268326416|emb|CBH40004.1| ribonuclease HII [uncultured archaeon] Length = 210 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 22/170 (12%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87 G+DE GRG + G + VA ++ G+ DSK++S +RE L + I + + + + Sbjct: 7 GVDEAGRGPVIGSMFVAGVLNYDGLEELGVKDSKRLSASRREHLAKIIEDATEVHVVEMT 66 Query: 88 HQYIDK----HNIHKATLDAIYHAVENLQVIPRSALIDGRSI-PEDLPC----------- 131 IDK ++K T++ + + Q P A +D + PE Sbjct: 67 ASEIDKAREERTLNKITVELFSEVINHFQ--PARAFVDAADVKPERFAANLRSNYKRVGE 124 Query: 132 -QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + + K D ++AASI+AKV RDR +R+ + G + GYP Sbjct: 125 LEIISEWKADDHYPVVSAASIVAKVHRDRSIRVLE---AEIGAEIGSGYP 171 >gi|294495980|ref|YP_003542473.1| RNase HII [Methanohalophilus mahii DSM 5219] gi|292666979|gb|ADE36828.1| RNase HII [Methanohalophilus mahii DSM 5219] Length = 215 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 84/183 (45%), Gaps = 33/183 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI- 80 +AGIDE G+G + GP+ VA +I+D + I G+ DSKK+S K+RE L +I A Sbjct: 3 IAGIDEAGKGPVIGPMCVAGVIMDESKINALKNLGVADSKKLSPKRRENLARQIRKYADG 62 Query: 81 ISISSASHQYIDK----HNIHKATLDAIYHAVENLQVIPRSALIDGRSI-PEDLPCQAFA 135 I I ID+ +++ + +ENL+ P A +D + E + A Sbjct: 63 IFIQEIEACQIDELRNIMSMNDIMIRGFSSVLENLK--PDLAYVDAADVNAERFGKKLLA 120 Query: 136 VIK----------------GDSISLSIAAASIIAKVTRDRLM-RIAHKKYPDYGFDSHVG 178 + D I ++AASIIAKV RD L+ I D+G G Sbjct: 121 AFEKKHEREKKPEIISEHGADDIYPIVSAASIIAKVRRDELIGNIKTAINEDFG----SG 176 Query: 179 YPT 181 YP+ Sbjct: 177 YPS 179 >gi|225464178|ref|XP_002269817.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] gi|296086584|emb|CBI32219.3| unnamed protein product [Vitis vinifera] Length = 297 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 25/162 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGIN--DSKKISHKKREELYEKITSSAII 81 + GIDE GRG + GP+V + +N +N DSK + +KREEL+E + + I Sbjct: 16 MMGIDEAGRGPVLGPMVYGCLYCARSYHNTLSTLNFADSKTLKEEKREELFENLKADESI 75 Query: 82 SIS---------SASHQYIDKHNIHKATLDA---IYHAVENLQVIPRSALIDGRS----- 124 + SA +K N+++ + D+ + V N+ V+ +D Sbjct: 76 GWAVDVIDPWELSAKMLKKNKINLNEISHDSAIGLITRVLNMGVLLTEVYVDTVGDAEKY 135 Query: 125 ---IPEDLPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMR 162 + E P F V K DS+ ++ ASI+AKVTRDR +R Sbjct: 136 RIKLSERFPAVKFVVAKKADSLYPVVSGASIVAKVTRDRALR 177 >gi|322511078|gb|ADX06391.1| putative ribonuclease HII [Organic Lake phycodnavirus 2] Length = 120 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 4/72 (5%) Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP----DYGFDSHVGYPTAKHQQVIKE 190 ++KGDSI I+AASI+AKV RD +R K+ P YG ++ GY T KH + IK+ Sbjct: 44 CIVKGDSIHKCISAASILAKVERDEYIRTLCKEQPILNERYGLLNNKGYGTKKHVEGIKQ 103 Query: 191 KGPSCIHRLTFR 202 G S HR +F+ Sbjct: 104 YGYSEYHRKSFK 115 >gi|315425616|dbj|BAJ47275.1| ribonuclease HII [Candidatus Caldiarchaeum subterraneum] Length = 189 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 32/180 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + G+DE GRG + GP+VVAA+ + + +P G+ DSK +S ++REE++EK+ +S + Sbjct: 2 LCGVDEAGRGCVVGPLVVAAVAAERDELPLLRALGVADSKTLSPRRREEIFEKLRASFRV 61 Query: 82 SISSASHQYID---KHNIHKATLDAIYHAVENL--QVIPR---------------SALID 121 S + I + N D Y + L PR L++ Sbjct: 62 GYMLVSPRRISSCLRVNGGDGLNDLEYGVMAELARSFRPRILFVDSPDRDVRRARRRLLE 121 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + D+ C +++GD + +AAAS++AKV RDR + + ++ D+G GYP+ Sbjct: 122 KLGVEMDVRC----MVRGDRRHVLVAAASVVAKVVRDRKVAMLRRRLGDFG----SGYPS 173 >gi|302836379|ref|XP_002949750.1| hypothetical protein VOLCADRAFT_104408 [Volvox carteri f. nagariensis] gi|300265109|gb|EFJ49302.1| hypothetical protein VOLCADRAFT_104408 [Volvox carteri f. nagariensis] Length = 308 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 41/180 (22%) Query: 16 AMVREKNMW----PVAGIDEVGRGALAGPVVVAAII--LDPNNIPFGINDSKKISHKKRE 69 + VR W + G+DE GRG + GP+V A+ L + G DSK ++H+ RE Sbjct: 21 SQVRGDEDWIRSPCILGVDEAGRGPVLGPMVYASAFCPLSSDISGRGYADSKTLTHEARE 80 Query: 70 ELYEKITSSA-------IISISSASHQYI--DKHNIHKATLDAIYHAVENLQVIPRSALI 120 +L+ I ++ I+S SH + DK +++ DA H + R+AL Sbjct: 81 KLFRAIDANTSVGWVAHIMSAQHISHNMLGRDKVSLNSLAFDATCHVI-------RTALE 133 Query: 121 DGRSIPE------------------DLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLM 161 G S+ + P +F V K DS+ ++AASIIAKV RD+ + Sbjct: 134 SGASVKQVYVDTVGDADRHSERLSRAFPGISFTVCPKADSLYPIVSAASIIAKVIRDKSL 193 >gi|225464176|ref|XP_002269852.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] Length = 278 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 68/148 (45%), Gaps = 20/148 (13%) Query: 28 GIDEVGRGALAGPVVVAAIIL--DPNNIPFGIN--DSKKISHKKREELYEKITSSAIISI 83 GIDE GRG + GP+V + +N +N DSK + +KREEL+E + + I Sbjct: 18 GIDEAGRGPVLGPMVYGCLYCARSYHNTLSTLNFADSKTLKEEKREELFENLKADESIGW 77 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS--------IPEDLPCQAFA 135 + ID + L + N+ V+ +D + E P F Sbjct: 78 AV---DVIDPWELSAKMLKKVL----NMGVLLTEVYVDTVGDAEKYRIKLSERFPAVKFV 130 Query: 136 VIK-GDSISLSIAAASIIAKVTRDRLMR 162 V K DS+ ++ ASI+AKVTRDR +R Sbjct: 131 VAKKADSLYPVVSGASIVAKVTRDRALR 158 >gi|326771770|ref|ZP_08231055.1| ribonuclease HII [Actinomyces viscosus C505] gi|326637903|gb|EGE38804.1| ribonuclease HII [Actinomyces viscosus C505] Length = 240 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 98/209 (46%), Gaps = 35/209 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISHKKREELYEKITSSAII- 81 V G+DEVGRGALAGPV V I+ ++ P G+ DSK+++ + R L E + + Sbjct: 24 VGGLDEVGRGALAGPVSVGLAIVARRTDDDFPEGLADSKQLTARARTVLIEPVRGWLVDH 83 Query: 82 SISSASHQYIDKHNIHKATLDA------------------IYHAVENLQVIPRSAL---I 120 +++ AS ID+H I A A I V + P+ L + Sbjct: 84 AVAHASPAEIDEHGIIGALRVAGLRALQQVADRGHAPGVIILDGVADWLTAPQPDLLTTL 143 Query: 121 DGRSIPEDLPCQAFA--------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 + P+D P A +K D+ +AAAS++AKV RDRLM A P YG Sbjct: 144 ESTHAPKDSPEPAEVPSTPPVRMEVKADARCAVVAAASVLAKVERDRLM--ADLDDPGYG 201 Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + S+ GY + H + + G S HR ++ Sbjct: 202 WASNKGYASPAHIRGLTSLGASDQHRRSW 230 >gi|254565155|ref|XP_002489688.1| Ribonuclease H2 catalytic subunit, removes RNA primers during Okazaki fragment synthesis [Pichia pastoris GS115] gi|238029484|emb|CAY67407.1| Ribonuclease H2 catalytic subunit, removes RNA primers during Okazaki fragment synthesis [Pichia pastoris GS115] gi|328350107|emb|CCA36507.1| ribonuclease H2 subunit A [Pichia pastoris CBS 7435] Length = 314 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 37/188 (19%) Query: 28 GIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSS----- 78 G+DE GRG + GP+V +P FG DSK ++ +KR EL E + + Sbjct: 53 GVDEAGRGPVVGPMVYGVSYCLEEYEPRLKDFGFADSKTLTEQKRSELLESLCNGDHELR 112 Query: 79 -----AIISISSA--SHQYIDKHNIHKATLDAIYHAVENLQVIP---------RSALIDG 122 A SIS+ S + HNI L+ H V +++I R +D Sbjct: 113 KNVGWATTSISACDISSAMLKPHNIGNYNLNEQAHDV-TMELIDKVIQKGVNLRHVYVDT 171 Query: 123 --------RSIPEDLPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 + + + P V K D+I +++AS+ AKVTRD +R ++ + + Sbjct: 172 VGPPASYQKKLQQRFPALLITVSKKADAIYPCVSSASVCAKVTRDVCLRTSNGE--ENLL 229 Query: 174 DSHVGYPT 181 D GYP+ Sbjct: 230 DCGSGYPS 237 >gi|312067297|ref|XP_003136676.1| ribonuclease HI large subunit [Loa loa] gi|307768160|gb|EFO27394.1| ribonuclease HI large subunit [Loa loa] Length = 303 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 36/169 (21%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 V GIDE GRG + GP+V A + NN + G++DSK ++ KRE+++E++ + Sbjct: 31 VVGIDEAGRGPVLGPMVYACAVTLVNNENILLEMGVDDSKVLTEAKREKIFERMEGDNMS 90 Query: 82 SISSASHQYIDKHNIH-------KATLDAIYH--AVE--------NLQVI---------- 114 + +H I I K +L+ + H A E N+ V+ Sbjct: 91 ELFGYAHCSISAQMISAAMLGRTKCSLNKLSHDCATELLKLAIDNNINVVEVYVDTVGPK 150 Query: 115 -PRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162 P A++ + P+ Q K D+ ++AASI+AKV RDR +R Sbjct: 151 GPYQAMLH-KKFPD---MQIIVSEKADAKFPIVSAASIVAKVKRDRALR 195 >gi|297380504|gb|ADI35391.1| Ribonuclease HII [Helicobacter pylori v225d] Length = 154 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +IKGD IA AS++AK +DR MR H + +YG+D + GY T +H + + + G + Sbjct: 69 TIIKGDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGAT 128 Query: 195 CIHRLTFRPLRN 206 HR +F L+N Sbjct: 129 PFHRHSF-TLKN 139 >gi|254167925|ref|ZP_04874774.1| ribonuclease HII [Aciduliprofundum boonei T469] gi|197623216|gb|EDY35782.1| ribonuclease HII [Aciduliprofundum boonei T469] Length = 212 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 19/179 (10%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKI--TSSAIISIS 84 G+DE GRG + GP+VVA + + + I + DSKK+S K RE L E+I +S I+ I Sbjct: 4 GVDEAGRGPVIGPLVVAGVCGEESKIASLRVKDSKKLSPKSRERLAEEIKKVASKIVVIK 63 Query: 85 ------SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP------CQ 132 A + + + I + + +V +A ++ E++ + Sbjct: 64 IEPEEIDALRERMTLNEIEVELFARVISQLNGDKVYVDAADVNEDRFAEEIKKKLGKDVE 123 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + K DS ++AASIIAKV RDR++ ++ ++G GYP+ + EK Sbjct: 124 IISEHKADSKYPMVSAASIIAKVERDRIIEELKEELGEFG----SGYPSDDRTKRFLEK 178 >gi|222480377|ref|YP_002566614.1| ribonuclease HII [Halorubrum lacusprofundi ATCC 49239] gi|222453279|gb|ACM57544.1| ribonuclease HII [Halorubrum lacusprofundi ATCC 49239] Length = 234 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 43/192 (22%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87 G+DE G+G + GP+V AA++ DP +P ++DSK+I+ +RE + +I ++ +++ A Sbjct: 4 GVDEAGKGPVLGPMVAAAVLADPVALPADVDDSKRIAPSRRESIDAEIRATDAVAVGVA- 62 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA-----------FAV 136 +++ I + D V R+AL ++ D P + FA Sbjct: 63 --FVEPAEIDRPDTDMNTLTVRGQARAVRAALHGVVAVDLDEPIRVVADAGDTSEARFAR 120 Query: 137 IKGDSISLS--------------------------IAAASIIAKVTRDRLMRIAHKKYPD 170 G+S++ + AAS++AKV RD M YP Sbjct: 121 RLGESVADPDSDTTDTEHPEVDVSAAHGADEDDPMVGAASVVAKVARDERMADIDADYPA 180 Query: 171 Y-GFDSHVGYPT 181 Y G S GYP+ Sbjct: 181 YDGLGS--GYPS 190 >gi|300710295|ref|YP_003736109.1| ribonuclease HII [Halalkalicoccus jeotgali B3] gi|299123978|gb|ADJ14317.1| ribonuclease HII [Halalkalicoccus jeotgali B3] Length = 214 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 24/172 (13%) Query: 28 GIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAI--ISIS 84 GIDE G+G + GP++ A + + D + +P GI+DSK+++ KR L E + I I+ Sbjct: 5 GIDEAGKGPVLGPMIAACVCVPDESVLPEGIDDSKRLTPAKRGRLSEALLGDEAIGIGIA 64 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG----D 140 + S ID +L HA +V+ + G D+ F G + Sbjct: 65 AVSPDRIDTPETDMNSLTVAAHAEAASEVVEPG--MTGICDAGDVDAGRFVHRVGQRLPE 122 Query: 141 SISLS-----------IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 +SLS + AAS++AKV RDR + Y + G GYP+ Sbjct: 123 GVSLSGEHGADEHHAIVGAASVVAKVERDRRVAALEAAYGEVGS----GYPS 170 >gi|149004283|ref|ZP_01829060.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS69] gi|147757777|gb|EDK64791.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS69] Length = 134 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/63 (52%), Positives = 42/63 (66%), Gaps = 6/63 (9%) Query: 11 HFELEAMVR-EKNMWP-----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 + LE+M+ EK ++ +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI Sbjct: 51 NLRLESMLSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIP 110 Query: 65 HKK 67 K+ Sbjct: 111 KKE 113 >gi|110668982|ref|YP_658793.1| ribonuclease HII [Haloquadratum walsbyi DSM 16790] gi|109626729|emb|CAJ53196.1| ribonuclease HII [Haloquadratum walsbyi DSM 16790] Length = 231 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 37/212 (17%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M P G DE G+G + GP++ AA+ P+ IP I+DSK+++ R L E + S I Sbjct: 1 MGPRIGSDEAGKGPVLGPMICAAVHASPSVIPDDIDDSKRLNASTRRRLRETLESHTAID 60 Query: 83 ISSA---SHQYID-KHNIHKATLDAIYHAVENLQVIPR---SALIDGRSIPED-----LP 130 I +A Q D + +++ TL+ A+ +L + + + D + E L Sbjct: 61 IGTAVIPVAQIDDPRTDMNTLTLNGHIAAIADLDGVATFNGTIVADASDVSESRFATRLE 120 Query: 131 CQAFAVIKG-DSISLS----------------IAAASIIAKVTRDRLMRIAHKKYPDYGF 173 + G D+I+L+ +AAASIIAK RD + K+Y G Sbjct: 121 SRLIDECNGIDTIALNHCSIEARHGADEDDPLVAAASIIAKARRDEQITALAKEYETTGP 180 Query: 174 DSHVGYPTAKH-----QQVIKEKG--PSCIHR 198 GYP+ + ++ I+ G P+C R Sbjct: 181 IGS-GYPSDQKTRAFLRRYIRTNGKVPACARR 211 >gi|281205710|gb|EFA79899.1| hypothetical protein PPL_06719 [Polysphondylium pallidum PN500] Length = 589 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 4/64 (6%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKIT 76 KN G+DE G+GA+ GP+V+AA+ LD + G+ DSKK+S ++REELY+ I Sbjct: 261 KNDMSYIGVDEAGKGAVLGPLVIAAVSLDSAAEQYLKAAGVKDSKKLSAQRREELYDIIK 320 Query: 77 SSAI 80 A+ Sbjct: 321 ERAL 324 >gi|20090807|ref|NP_616882.1| ribonuclease HII [Methanosarcina acetivorans C2A] gi|34395791|sp|Q8TPF4|RNH2_METAC RecName: Full=Ribonuclease HII; Short=RNase HII gi|19915872|gb|AAM05362.1| ribonuclease Hii [Methanosarcina acetivorans C2A] Length = 223 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 88/181 (48%), Gaps = 28/181 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-- 79 +AGIDE G+G + GP+ + + ++ + G+ DSKK++ KKRE+L +I A Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKIEESRAHILKVLGVADSKKLTPKKREQLASQIKKHADG 62 Query: 80 --IISISSASHQYIDK-HNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDL---- 129 I+ I+ A + K ++++ + +E L+ V +A + E+L Sbjct: 63 FFILEITPAQIDELRKIMSMNEIMVICFAKVLEQLKPDIVYADAADVKAERFAENLRRQY 122 Query: 130 ----PCQA-----FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 P A ++ + D+I ++AASIIAKV RD L+ K ++ D GYP Sbjct: 123 AKTNPAHAKKIEIISMHQADAIYPVVSAASIIAKVRRDELIEEIKK---EWSVDFGSGYP 179 Query: 181 T 181 + Sbjct: 180 S 180 >gi|288561094|ref|YP_003424580.1| ribonuclease HII RnhB [Methanobrevibacter ruminantium M1] gi|288543804|gb|ADC47688.1| ribonuclease HII RnhB [Methanobrevibacter ruminantium M1] Length = 219 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 20/160 (12%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G+DE GRG + GP+VVA I++ G+ DSK+I+ K+R LY K+T Sbjct: 5 GLDEAGRGPVLGPMVVAGIVIPEKKEKIIERMGVKDSKRITPKRRAVLYRKLTRMFDYET 64 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPR----SALIDGRSIPE--------DLPC 131 S + ID L+ I + +++I + + +ID I E + Sbjct: 65 VEISAKDIDLLRAKGVNLNQI-EKLAMMRIIAKLKADTIIIDSLDIKEGRLEEEMQNFVG 123 Query: 132 QAFAVI---KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 + VI K D + + AASIIAK RD ++ +K+Y Sbjct: 124 EGSKVIAEHKADDKYIVVGAASIIAKTKRDEIINQINKEY 163 >gi|297825539|ref|XP_002880652.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297326491|gb|EFH56911.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 296 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 27/182 (14%) Query: 26 VAGIDEVGRGALAGPVVVAA----IILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG + GP+V I + DSK + +KREELYE + + Sbjct: 16 LMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEEKREELYENLKLDKSL 75 Query: 82 SIS---------SASHQYIDKHNIHKATLDA---IYHAVENLQVIPRSALIDGRSIPED- 128 + SA +K N+++ + ++ + V ++ V+ A +D PE Sbjct: 76 GWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPEKY 135 Query: 129 -------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMR--IAHKKYPDYGFDSHVG 178 P F V K DS+ ++ ASI+AKVTRDR +R + + D + G Sbjct: 136 RIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALREWLVEETGEDINRNFGSG 195 Query: 179 YP 180 YP Sbjct: 196 YP 197 >gi|123502031|ref|XP_001328204.1| ribonuclease HII family protein [Trichomonas vaginalis G3] gi|121911144|gb|EAY15981.1| ribonuclease HII family protein [Trichomonas vaginalis G3] Length = 269 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 93/234 (39%), Gaps = 77/234 (32%) Query: 28 GIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREELYEKITSSAI----- 80 GIDE GRG GP+V + I PN P ++DSKK++ ++REE++++I + Sbjct: 23 GIDEAGRGPALGPMVYSGAIA-PNKYEWPKDVDDSKKLTAEQREEIFDEIKKLPVGFAVR 81 Query: 81 ------------------ISISSASHQ-------------------YIDKHNIHKATLDA 103 IS+++ SH Y+D I ++ D Sbjct: 82 VISAEEISAKQTALVNPPISLNTVSHHAARDLVQAFLDKGLNIKALYVDTVGIAESYQDW 141 Query: 104 IYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163 + N++V R+ K D+ + AASI AKVTRDRL+ Sbjct: 142 LQDKFPNIKVTVRA--------------------KADATYKVVGAASICAKVTRDRLL-- 179 Query: 164 AHKKYPDYGF----DSHVGYPTAKHQQVIKEK------GPSCIHRLTFRPLRNL 207 A K+ + G D GYP+ E G + R ++P++ + Sbjct: 180 ADFKFEEPGLEISHDWGSGYPSDPKTSNWLETNFDPVFGYPSVARFDWKPIKMM 233 >gi|294890217|ref|XP_002773106.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC 50983] gi|239878004|gb|EER04922.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC 50983] Length = 350 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 79/178 (44%), Gaps = 37/178 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA---- 79 GIDE GRG + GP+V A I D G NDSK+++ KR EL+E I + A Sbjct: 56 GIDEAGRGPVFGPMVYGAAISDIRKSDALGKMGFNDSKQLTEAKRSELFEGIHNEALKDD 115 Query: 80 --------IISISSASHQYIDKHNI------HKATLDAIYHAV-ENLQVIPRSALIDGRS 124 +++ S + + ++ + H+ + I HA+ E + V + +D Sbjct: 116 GVLGFAVHVLTAHEISTKMLRRNKVNLNRISHETAIGLIEHALSEGINV--KEVYVDTVG 173 Query: 125 IPEDLPCQAFAVI------------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 PE + ++ K D+I +AASI AKV RDRL+ YP+ Sbjct: 174 DPERYQNKLSSIFKRRGVDTIVVCKKADAIYPICSAASICAKVIRDRLVEEEISYYPE 231 >gi|168019116|ref|XP_001762091.1| predicted protein [Physcomitrella patens subsp. patens] gi|162686808|gb|EDQ73195.1| predicted protein [Physcomitrella patens subsp. patens] Length = 307 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 73/160 (45%), Gaps = 25/160 (15%) Query: 28 GIDEVGRGALAGPVV--VAAIILDPNN--IPFGINDSKKISHKKREELYEKITSSAIISI 83 GIDE GRG + GP+V A +D DSK ++ KREELYE + + ++ Sbjct: 18 GIDEAGRGPVLGPMVYGCAYCPIDQKERISTLKFADSKALTESKREELYENLKADDLMGW 77 Query: 84 S---------SASHQYIDKHNIHKATLDAIYHAVEN---LQVIPRSALIDGRSIP---ED 128 + SA K N++ + ++ + N L V +D P +D Sbjct: 78 AVDVIDPKDLSAKMLRRAKVNLNTISFESAMGLIRNTLDLGVFLTEVFVDTVGDPGKYQD 137 Query: 129 LPCQAFAVI------KGDSISLSIAAASIIAKVTRDRLMR 162 + F I K DS+ ++AASI+AKVTRDR +R Sbjct: 138 MLTTKFPGIRFTVSKKADSLFPIVSAASIVAKVTRDRALR 177 >gi|229105182|ref|ZP_04235831.1| Ribonuclease HIII [Bacillus cereus Rock3-28] gi|228678108|gb|EEL32336.1| Ribonuclease HIII [Bacillus cereus Rock3-28] Length = 295 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 33/202 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 +AG DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 81 IAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQITAIAKQLLHVVPY 140 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 141 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKIAPTTPEGILIDQFTQPDTYY 199 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 L Q + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 200 KYLTKQKQVQREHVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 258 Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196 V AK Q+V KE+ P + Sbjct: 259 QVDIAAAKLIQKVGKERLPEFV 280 >gi|55379775|ref|YP_137625.1| ribonuclease HII [Haloarcula marismortui ATCC 43049] gi|74516083|sp|Q5UXT4|RNH2_HALMA RecName: Full=Ribonuclease HII; Short=RNase HII gi|55232500|gb|AAV47919.1| RNAase HII [Haloarcula marismortui ATCC 43049] Length = 211 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 77/169 (45%), Gaps = 20/169 (11%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSA 86 G+DE G+G + G + AA+ DP +P G+ DSK I ++RE L ++I SA + I+ Sbjct: 4 GVDEAGKGPVLGSMFAAAVRADPAALPGGVGDSKDIRPERRERLAKEIRESADAVGIAEI 63 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL---ID---------GRSIPE--DLPCQ 132 S + ID TL + E L + R L +D GR + + D Sbjct: 64 SVERIDADETDMNTL-TVEGQAEALSAVARDGLSGTVDAGDTDAARFGRRVADAVDTDVA 122 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 A D + AASIIAKV RD + +Y D G GYP+ Sbjct: 123 VTAEHGADETDSLVGAASIIAKVARDTHVAELAAEYGDVG----SGYPS 167 >gi|229099014|ref|ZP_04229949.1| Ribonuclease HIII [Bacillus cereus Rock3-29] gi|228684512|gb|EEL38455.1| Ribonuclease HIII [Bacillus cereus Rock3-29] Length = 295 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 33/202 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 +AG DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 81 IAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQITAIAKQLLHVVPY 140 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 141 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKIAPTTPEGILIDQFTQPDTYY 199 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 L Q + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 200 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMLLPK-GAGK 258 Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196 V AK Q+V KE+ P + Sbjct: 259 QVDIAAAKLIQKVGKERLPEFV 280 >gi|229118045|ref|ZP_04247405.1| Ribonuclease HIII [Bacillus cereus Rock1-3] gi|228665494|gb|EEL20976.1| Ribonuclease HIII [Bacillus cereus Rock1-3] Length = 295 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 33/202 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 +AG DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 81 IAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQITAIAKQLLHVVPY 140 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 141 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKIAPTTPEGILIDQFTQPDTYY 199 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 L Q + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 200 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMLLPK-GAGK 258 Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196 V AK Q+V KE+ P + Sbjct: 259 QVDIAAAKLIQKVGKERLPEFV 280 >gi|48478335|ref|YP_024041.1| ribonuclease HII [Picrophilus torridus DSM 9790] gi|73917829|sp|Q6KZK4|RNH2_PICTO RecName: Full=Ribonuclease HII; Short=RNase HII gi|48430983|gb|AAT43848.1| ribonuclease HII [Picrophilus torridus DSM 9790] Length = 199 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 82/172 (47%), Gaps = 28/172 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS----SAII 81 V GIDE GRG + GP+V+A + D +I F +NDSK ++ KR ++ ++ II Sbjct: 3 VCGIDEAGRGPVIGPMVMAMVCAD--DINFYVNDSKLLTRNKRSLIFNDVSGLYHKYYII 60 Query: 82 ------------SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 S+++ QY +K I KA + IY ++ ++ R+ E + Sbjct: 61 NPAEIDDAVKKHSLNNLEEQYAEKL-ILKAECEKIYIDCFDVNESRLERILKDRTGKE-V 118 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 C+ A D ++AASIIAKV RD + Y D+G GYP+ Sbjct: 119 ICRHHA----DRDIKIVSAASIIAKVLRDNEIEKLKSIYGDFG----SGYPS 162 >gi|320168268|gb|EFW45167.1| ribonuclease H2 [Capsaspora owczarzaki ATCC 30864] Length = 385 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 79/185 (42%), Gaps = 33/185 (17%) Query: 28 GIDEVGRGALAGPVVVA----AIILDPNNIPFGINDSKKISHKKREELYEKITSS---AI 80 GIDE GRG + GP+V + DP G +DSKK+ R L++ I + Sbjct: 113 GIDEAGRGPVLGPMVYGISYCPLSDDPRLRQMGFDDSKKLDEPTRRRLFDDINKANDFMG 172 Query: 81 ISISSASHQYIDKHNIHKA--TLDAIYHAVENLQVIPRSALIDGRSI------------- 125 S+ S Q I + +A L+A+ H + + + AL DG +I Sbjct: 173 FSVCVISPQDISSSMLRRAKYNLNALSH--DTAMSLVQRALDDGVNIAKVFVDTVGTAET 230 Query: 126 -----PEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP---DYGFDSH 176 E P F V K DS+ ++AASI AKV RD ++ I P G D Sbjct: 231 YQEKLSERFPGIEFKVSAKADSLFPIVSAASICAKVVRDHVLDIWQFSEPHGSTIGRDFG 290 Query: 177 VGYPT 181 GYP+ Sbjct: 291 CGYPS 295 >gi|293363602|ref|ZP_06610358.1| ribonuclease HII [Mycoplasma alligatoris A21JP2] gi|292552951|gb|EFF41705.1| ribonuclease HII [Mycoplasma alligatoris A21JP2] Length = 245 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 90/204 (44%), Gaps = 41/204 (20%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-----PFGINDSKKISHKKR-EELYEKI 75 N + G+DE G G GP+V AA+ + PNN+ G+ DSK I ++K+ L +I Sbjct: 25 NQLNIIGVDETGVGDYFGPLVTAAVFI-PNNLLEYFKNLGVKDSKLIKNEKQIHYLANEI 83 Query: 76 TSSAIIS---ISSASHQYIDKH--NIHKATLDAIYHAVENLQVI--PRSALIDGRSIPED 128 S +S++ + ID + NIHK A HA+ +L+ + R+ ID I + Sbjct: 84 KSKCYYKTYVLSNSGYNKIDNNYKNIHKLKFFAHSHAINSLEELLSLRNVKIDYIFIDQY 143 Query: 129 LPCQAF-----AVI-------------------KGDSISLSIAAASIIAKVTRDRLMRIA 164 AF +I K +SI LS+AAASI+A R L+ Sbjct: 144 TTLNAFNKYYDEIIILNNWSKINEFKSPILLAHKAESIHLSVAAASILA---RAELLDSF 200 Query: 165 HKKYPDYGFDSHVGYPTAKHQQVI 188 K Y FD +G QV+ Sbjct: 201 KKIKEIYNFDFLLGANQKVKNQVV 224 >gi|229013757|ref|ZP_04170885.1| Ribonuclease HIII [Bacillus mycoides DSM 2048] gi|228747426|gb|EEL97301.1| Ribonuclease HIII [Bacillus mycoides DSM 2048] Length = 312 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 95/202 (47%), Gaps = 33/202 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT----S 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + E+ +++ Sbjct: 97 ILGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLHVVPY 156 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKIAPTTPEGILIDQFTQPDTYY 215 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 L Q + KG+S+ L++AAASI+A+ + D L + A + P G Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKKFDELSKKAGMQLPK-GAGK 274 Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196 V AK Q+V KE+ P + Sbjct: 275 QVDIAAAKLIQKVGKERLPEFV 296 >gi|148643039|ref|YP_001273552.1| ribonuclease HII [Methanobrevibacter smithii ATCC 35061] gi|222445276|ref|ZP_03607791.1| hypothetical protein METSMIALI_00904 [Methanobrevibacter smithii DSM 2375] gi|261350165|ref|ZP_05975582.1| ribonuclease HII [Methanobrevibacter smithii DSM 2374] gi|189043626|sp|A5ULV6|RNH2_METS3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|148552056|gb|ABQ87184.1| ribonuclease HII, RnhB [Methanobrevibacter smithii ATCC 35061] gi|222434841|gb|EEE42006.1| hypothetical protein METSMIALI_00904 [Methanobrevibacter smithii DSM 2375] gi|288860951|gb|EFC93249.1| ribonuclease HII [Methanobrevibacter smithii DSM 2374] Length = 207 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 23/175 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP-----FGINDSKKISHKKREELYEKITSS-- 78 V GIDE GRG++ GP+V+A +I+ P + G+ DSK+++ +R L K+ Sbjct: 3 VLGIDEAGRGSVLGPLVIAGVIV-PEKMDIVLERMGVKDSKRLTPNRRTILSRKLKKMFE 61 Query: 79 ---AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI---------P 126 +IS + D N+++ + + NL P A++D I Sbjct: 62 YDLVVISAQDIDNMRADGINLNEIERIGMEKILSNLN--PEKAIVDAVDIKAERFQNKLA 119 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 D A K D + ++AASIIAK RD + +K Y G GYP+ Sbjct: 120 NDTGVNVVAEHKADDNYIEVSAASIIAKQERDAHIAEINKDYIKMGGIGS-GYPS 173 >gi|229141283|ref|ZP_04269821.1| Ribonuclease HIII [Bacillus cereus BDRD-ST26] gi|229198705|ref|ZP_04325404.1| Ribonuclease HIII [Bacillus cereus m1293] gi|228584781|gb|EEK42900.1| Ribonuclease HIII [Bacillus cereus m1293] gi|228642064|gb|EEK98357.1| Ribonuclease HIII [Bacillus cereus BDRD-ST26] Length = 332 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 27/155 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ ++L + Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPY 177 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL + P LID + P+ Sbjct: 178 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPIKPEGVLIDQFTQPDTYY 236 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154 L Q + KG+S+ L++AAASI+A+ Sbjct: 237 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 271 >gi|170590300|ref|XP_001899910.1| ribonuclease HI large subunit [Brugia malayi] gi|158592542|gb|EDP31140.1| ribonuclease HI large subunit, putative [Brugia malayi] Length = 282 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 36/167 (21%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIISI 83 GIDE GRG + GP+V + NN G++DSK ++ KREE++E++ S + I Sbjct: 33 GIDEAGRGPVLGPMVYTCAVTLVNNENMLTKIGVDDSKVLTEAKREEIFERMKGSNMSEI 92 Query: 84 -----SSASHQYID-------KHNIHKATLDAIYHAVE-----NLQVI-----------P 115 S S Q I K++++K + D ++ N+ V+ P Sbjct: 93 FGYACRSVSAQMISAAMLGRTKYSLNKLSHDCAIELLKLAVDNNINVVDVYVDTVGPKDP 152 Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162 A++ + P+ Q K D+ ++AAS+IAKV RDR +R Sbjct: 153 YQAMLH-KKFPD---MQIIVSEKADAKFPIVSAASVIAKVKRDRALR 195 >gi|222098020|ref|YP_002532077.1| ribonuclease hiii [Bacillus cereus Q1] gi|221242078|gb|ACM14788.1| ribonuclease HII [Bacillus cereus Q1] Length = 276 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 27/157 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ ++L + Sbjct: 62 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPY 121 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL + P LID + P+ Sbjct: 122 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPIKPEGVLIDQFTQPDTYY 180 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT 156 L Q + KG+S+ L++AAASI+A+ + Sbjct: 181 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYS 217 >gi|206977745|ref|ZP_03238636.1| ribonuclease HIII [Bacillus cereus H3081.97] gi|217962037|ref|YP_002340607.1| ribonuclease HIII [Bacillus cereus AH187] gi|226736827|sp|B7HRJ7|RNH3_BACC7 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|206744046|gb|EDZ55462.1| ribonuclease HIII [Bacillus cereus H3081.97] gi|217067519|gb|ACJ81769.1| ribonuclease HIII [Bacillus cereus AH187] Length = 311 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 27/157 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ ++L + Sbjct: 97 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPY 156 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL + P LID + P+ Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPIKPEGVLIDQFTQPDTYY 215 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT 156 L Q + KG+S+ L++AAASI+A+ + Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYS 252 >gi|58271424|ref|XP_572868.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] gi|57229127|gb|AAW45561.1| conserved hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] Length = 260 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 25/161 (15%) Query: 26 VAGIDEVGRGALAGPVVVAA----IILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG + GP+V AA + P G +DSK +S + R+ L+E + Sbjct: 38 IMGIDEAGRGPVLGPMVYAAAYCPLSFKPILESIGFDDSKALSAETRQTLWESFGVHPPL 97 Query: 82 SISSA--SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED----------- 128 SS+ S Q I + + K ++ A + + ++AL G ++ E Sbjct: 98 CYSSSTLSPQDISSNMLRKVPINLNRQAEDATVGLIQAALNRGINVTECYVDALGPAPQW 157 Query: 129 -------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLM 161 P F V K DS+ + AASI+AKVTRDR + Sbjct: 158 QARLTAIFPTIKFTVCPKADSLFKIVGAASIVAKVTRDRYV 198 >gi|148665343|gb|EDK97759.1| phosphatidylinositol glycan anchor biosynthesis, class Z [Mus musculus] Length = 799 Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 52/181 (28%), Positives = 80/181 (44%), Gaps = 40/181 (22%) Query: 26 VAGIDEVGRGALAGPVVVA------AIILDPNNIPFGINDSKKISHKKREELYEK----- 74 V G+DE GR + GP+V A + + DP + + DSK ++ +RE L+ K Sbjct: 30 VLGVDEAGRAPVLGPMVYAICYCPLSRLADPEALK--VADSKTLTENERERLFTKMEEDG 87 Query: 75 --------ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 + S +ISIS K+N++ + D + N + IP S + I Sbjct: 88 DFVGWSLDVLSPNLISISMLGRV---KYNLNSLSHDTAAELIWNARDIPGSIITALSGI- 143 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR------IAHKKYPDYGFDSHVGYP 180 + K DS+ ++AASI AKVTRD+ ++ I DYG GYP Sbjct: 144 -----EVTVKAKADSLFPVVSAASIFAKVTRDKAVKNWQFVEILQDLDSDYG----SGYP 194 Query: 181 T 181 + Sbjct: 195 S 195 >gi|229152752|ref|ZP_04280936.1| Ribonuclease HIII [Bacillus cereus m1550] gi|228630730|gb|EEK87375.1| Ribonuclease HIII [Bacillus cereus m1550] Length = 337 Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 33/202 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 241 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 L Q + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 300 Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196 V AK Q+V KE+ P + Sbjct: 301 QVDIAAAKLIQKVGKERLPEFV 322 >gi|21228916|ref|NP_634838.1| ribonuclease HII [Methanosarcina mazei Go1] gi|34395785|sp|Q8PTA3|RNH2_METMA RecName: Full=Ribonuclease HII; Short=RNase HII gi|20907449|gb|AAM32510.1| Ribonuclease [Methanosarcina mazei Go1] Length = 220 Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 28/181 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-- 79 +AGIDE G+G + GP+ + + +D + G+ DSKK++ KKRE+L +I A Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKIDESKAHILKVLGVADSKKLTPKKREQLASQIKKHADG 62 Query: 80 --IISISSASHQYIDK-HNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLPCQ- 132 I +S + + K ++++ + +E L+ V +A + E+L Q Sbjct: 63 YFIFEVSPSQIDELRKIMSMNEIMVVCFAKVLEQLKPDIVYADAADVKAERFAENLLRQY 122 Query: 133 ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 ++ + D+I ++AASIIAKV RD L+ + ++ D GYP Sbjct: 123 AKTSPDHAKKIKVVSMHQADAIYPVVSAASIIAKVRRDELIEELKR---EWCIDFGSGYP 179 Query: 181 T 181 + Sbjct: 180 S 180 >gi|30264624|ref|NP_847001.1| ribonuclease HIII [Bacillus anthracis str. Ames] gi|47530095|ref|YP_021444.1| ribonuclease HIII [Bacillus anthracis str. 'Ames Ancestor'] gi|49187446|ref|YP_030698.1| ribonuclease HIII [Bacillus anthracis str. Sterne] gi|165871447|ref|ZP_02216094.1| ribonuclease HIII [Bacillus anthracis str. A0488] gi|167641557|ref|ZP_02399804.1| ribonuclease HIII [Bacillus anthracis str. A0193] gi|170708703|ref|ZP_02899141.1| ribonuclease HIII [Bacillus anthracis str. A0389] gi|177653122|ref|ZP_02935409.1| ribonuclease HIII [Bacillus anthracis str. A0174] gi|190566898|ref|ZP_03019814.1| ribonuclease HIII [Bacillus anthracis Tsiankovskii-I] gi|227817338|ref|YP_002817347.1| ribonuclease HIII [Bacillus anthracis str. CDC 684] gi|229601632|ref|YP_002868834.1| ribonuclease HIII [Bacillus anthracis str. A0248] gi|254686953|ref|ZP_05150811.1| ribonuclease HIII [Bacillus anthracis str. CNEVA-9066] gi|254724517|ref|ZP_05186300.1| ribonuclease HIII [Bacillus anthracis str. A1055] gi|254736662|ref|ZP_05194368.1| ribonuclease HIII [Bacillus anthracis str. Western North America USA6153] gi|254741700|ref|ZP_05199387.1| ribonuclease HIII [Bacillus anthracis str. Kruger B] gi|254754703|ref|ZP_05206738.1| ribonuclease HIII [Bacillus anthracis str. Vollum] gi|254757535|ref|ZP_05209562.1| ribonuclease HIII [Bacillus anthracis str. Australia 94] gi|73917840|sp|Q81L36|RNH3_BACAN RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|254808009|sp|C3PAE4|RNH3_BACAA RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|254808010|sp|C3L8T2|RNH3_BACAC RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|30259282|gb|AAP28487.1| ribonuclease HIII [Bacillus anthracis str. Ames] gi|47505243|gb|AAT33919.1| ribonuclease HIII [Bacillus anthracis str. 'Ames Ancestor'] gi|49181373|gb|AAT56749.1| ribonuclease HIII [Bacillus anthracis str. Sterne] gi|164712744|gb|EDR18274.1| ribonuclease HIII [Bacillus anthracis str. A0488] gi|167510442|gb|EDR85841.1| ribonuclease HIII [Bacillus anthracis str. A0193] gi|170126383|gb|EDS95272.1| ribonuclease HIII [Bacillus anthracis str. A0389] gi|172081646|gb|EDT66717.1| ribonuclease HIII [Bacillus anthracis str. A0174] gi|190561889|gb|EDV15858.1| ribonuclease HIII [Bacillus anthracis Tsiankovskii-I] gi|227005114|gb|ACP14857.1| ribonuclease HIII [Bacillus anthracis str. CDC 684] gi|229266040|gb|ACQ47677.1| ribonuclease HIII [Bacillus anthracis str. A0248] Length = 311 Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 35/187 (18%) Query: 4 NSIPERPHFELEAMVREKNMWP--------VAGIDEVGRGALAGPVVVAAIILDPNNIP- 54 ++P+ P ++ V P + G DEVG G GP+ V A+ +D IP Sbjct: 67 QTVPQTPKIAVKKSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPL 126 Query: 55 ---FGINDSKKISHKK----REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYH- 106 G+ DSK ++ ++ ++L + S+++ + ++ DK N ++ L A+ H Sbjct: 127 LKELGVKDSKNLNDEQITAIAKQLLHVVPYSSLVLHNEKYNELFDKGN-NQGKLKALLHN 185 Query: 107 -AVENL-----QVIPRSALIDGRSIPED----LPCQ-------AFAVIKGDSISLSIAAA 149 A+ NL P LID + P+ L Q + KG+S+ L++AAA Sbjct: 186 KAITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENVYFATKGESVHLAVAAA 245 Query: 150 SIIAKVT 156 SI+A+ + Sbjct: 246 SILARYS 252 >gi|196034532|ref|ZP_03101941.1| ribonuclease HIII [Bacillus cereus W] gi|228929603|ref|ZP_04092621.1| Ribonuclease HIII [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229124121|ref|ZP_04253313.1| Ribonuclease HIII [Bacillus cereus 95/8201] gi|195993074|gb|EDX57033.1| ribonuclease HIII [Bacillus cereus W] gi|228659423|gb|EEL15071.1| Ribonuclease HIII [Bacillus cereus 95/8201] gi|228829990|gb|EEM75609.1| Ribonuclease HIII [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 337 Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 41/231 (17%) Query: 5 SIPERPHFELEAMVREKNMWP--------VAGIDEVGRGALAGPVVVAAIILDPNNIP-- 54 ++P+ P ++ V P + G DEVG G GP+ V A+ +D IP Sbjct: 94 TVPQTPKIAVKKSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLL 153 Query: 55 --FGINDSKKISHKK----REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYH-- 106 G+ DSK ++ ++ ++L + S+++ + ++ DK N ++ L A+ H Sbjct: 154 KELGVKDSKNLNDEQITAIAKQLLHVVPYSSLVLHNEKYNELFDKGN-NQGKLKALLHNK 212 Query: 107 AVENLQ-----VIPRSALIDGRSIPED----LPCQ-------AFAVIKGDSISLSIAAAS 150 A+ NL P LID + P+ L Q + KG+S+ L++AAAS Sbjct: 213 AITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENVYFATKGESVHLAVAAAS 272 Query: 151 IIAKVT----RDRLMRIAHKKYPDYGFDSHVGYPTAKH-QQVIKEKGPSCI 196 I+A+ + D L + A P G V AK Q++ KE+ P + Sbjct: 273 ILARYSFVKQFDELSKKAGMPLPK-GAGKQVDIAAAKLIQKLGKERLPEFV 322 >gi|65321922|ref|ZP_00394881.1| COG1039: Ribonuclease HIII [Bacillus anthracis str. A2012] Length = 337 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 35/186 (18%) Query: 5 SIPERPHFELEAMVREKNMWP--------VAGIDEVGRGALAGPVVVAAIILDPNNIP-- 54 ++P+ P ++ V P + G DEVG G GP+ V A+ +D IP Sbjct: 94 TVPQTPKIAVKKSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLL 153 Query: 55 --FGINDSKKISHKK----REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYH-- 106 G+ DSK ++ ++ ++L + S+++ + ++ DK N ++ L A+ H Sbjct: 154 KELGVKDSKNLNDEQITAIAKQLLHVVPYSSLVLHNEKYNELFDKGN-NQGKLKALLHNK 212 Query: 107 AVENLQ-----VIPRSALIDGRSIPED----LPCQ-------AFAVIKGDSISLSIAAAS 150 A+ NL P LID + P+ L Q + KG+S+ L++AAAS Sbjct: 213 AITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENVYFATKGESVHLAVAAAS 272 Query: 151 IIAKVT 156 I+A+ + Sbjct: 273 ILARYS 278 >gi|242082852|ref|XP_002441851.1| hypothetical protein SORBIDRAFT_08g003480 [Sorghum bicolor] gi|241942544|gb|EES15689.1| hypothetical protein SORBIDRAFT_08g003480 [Sorghum bicolor] Length = 297 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 31/165 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL--DPNNI--PFGINDSKKISHKKREELYE--KITSS- 78 + GIDE GRG + GP+V + NN DSK + ++REEL+E K+ SS Sbjct: 15 LMGIDEAGRGPVLGPMVYGCMYCARSYNNTLSTLKFADSKTLKEEQREELFESLKVNSSI 74 Query: 79 ----AIISISSASHQYIDKHNIHKATLDAIYH--------AVENLQVIPRSALIDGRSIP 126 +I S + + K ++ L+ I H V ++ ++ ID P Sbjct: 75 GWEVDVICPKDLSAKMLKKSKVN---LNEISHNSAMGLVRKVLDMGILLAEVYIDTVGDP 131 Query: 127 ED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMR 162 E P F V K DS+ ++ ASI+AKVTRDR +R Sbjct: 132 EKYRIKLTEKFPGIKFVVAKKADSLYPVVSGASIVAKVTRDRALR 176 >gi|167635636|ref|ZP_02393948.1| ribonuclease HIII [Bacillus anthracis str. A0442] gi|170688262|ref|ZP_02879472.1| ribonuclease HIII [Bacillus anthracis str. A0465] gi|167529056|gb|EDR91811.1| ribonuclease HIII [Bacillus anthracis str. A0442] gi|170667768|gb|EDT18521.1| ribonuclease HIII [Bacillus anthracis str. A0465] Length = 332 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 35/185 (18%) Query: 4 NSIPERPHFELEAMVREKNMWP--------VAGIDEVGRGALAGPVVVAAIILDPNNIP- 54 ++P+ P ++ V P + G DEVG G GP+ V A+ +D IP Sbjct: 88 QTVPQTPKIAVKKSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPL 147 Query: 55 ---FGINDSKKISHKK----REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYH- 106 G+ DSK ++ ++ ++L + S+++ + ++ DK N ++ L A+ H Sbjct: 148 LKELGVKDSKNLNDEQITAIAKQLLHVVPYSSLVLHNEKYNELFDKGN-NQGKLKALLHN 206 Query: 107 -AVENL-----QVIPRSALIDGRSIPED----LPCQ-------AFAVIKGDSISLSIAAA 149 A+ NL P LID + P+ L Q + KG+S+ L++AAA Sbjct: 207 KAITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENVYFATKGESVHLAVAAA 266 Query: 150 SIIAK 154 SI+A+ Sbjct: 267 SILAR 271 >gi|229169283|ref|ZP_04296994.1| Ribonuclease HIII [Bacillus cereus AH621] gi|228614178|gb|EEK71292.1| Ribonuclease HIII [Bacillus cereus AH621] Length = 295 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 95/202 (47%), Gaps = 33/202 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT----S 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + E+ +++ Sbjct: 81 ILGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLHVVPY 140 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 141 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKIAPTKPEGILIDQFTQPDTYY 199 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 L Q + KG+S+ L++AAASI+A+ + D L + A + P G Sbjct: 200 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMQLPK-GAGK 258 Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196 V AK Q+V KE+ P + Sbjct: 259 QVDIAAAKLIQKVGKERLPEFV 280 >gi|163942287|ref|YP_001647171.1| ribonuclease HIII [Bacillus weihenstephanensis KBAB4] gi|226741380|sp|A9VJL6|RNH3_BACWK RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|163864484|gb|ABY45543.1| ribonuclease HIII [Bacillus weihenstephanensis KBAB4] Length = 312 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 95/202 (47%), Gaps = 33/202 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT----S 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + E+ +++ Sbjct: 97 ILGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLHVVPY 156 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKIAPTKPEGILIDQFTQPDTYY 215 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 L Q + KG+S+ L++AAASI+A+ + D L + A + P G Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMQLPK-GAGK 274 Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196 V AK Q+V KE+ P + Sbjct: 275 QVDIAAAKLIQKVGKERLPEFV 296 >gi|218232445|ref|YP_002369353.1| ribonuclease HIII [Bacillus cereus B4264] gi|218160402|gb|ACK60394.1| ribonuclease HIII [Bacillus cereus B4264] Length = 337 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 33/202 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ ++L + Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPY 182 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 241 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 L Q + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 300 Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196 V AK Q++ KE+ P + Sbjct: 301 QVDIAAAKLIQKLGKERLPEFV 322 >gi|118479705|ref|YP_896856.1| ribonuclease HIII [Bacillus thuringiensis str. Al Hakam] gi|196044948|ref|ZP_03112182.1| ribonuclease HIII [Bacillus cereus 03BB108] gi|229186809|ref|ZP_04313964.1| Ribonuclease HIII [Bacillus cereus BGSC 6E1] gi|118418930|gb|ABK87349.1| ribonuclease HII [Bacillus thuringiensis str. Al Hakam] gi|196024436|gb|EDX63109.1| ribonuclease HIII [Bacillus cereus 03BB108] gi|228596546|gb|EEK54211.1| Ribonuclease HIII [Bacillus cereus BGSC 6E1] Length = 337 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 27/155 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ ++L + Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPY 182 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 241 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154 L Q + KG+S+ L++AAASI+A+ Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 276 >gi|229192756|ref|ZP_04319714.1| Ribonuclease HIII [Bacillus cereus ATCC 10876] gi|228590595|gb|EEK48456.1| Ribonuclease HIII [Bacillus cereus ATCC 10876] Length = 332 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 33/202 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 177 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 178 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 236 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 L Q + KG+S+ L++AAASI+A+ + D L++ A P G Sbjct: 237 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELIKKAGMPLPK-GAGK 295 Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196 V AK Q++ KE+ P + Sbjct: 296 QVDIAAAKLIQKLGKERLPEFV 317 >gi|228935866|ref|ZP_04098676.1| Ribonuclease HIII [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823634|gb|EEM69456.1| Ribonuclease HIII [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 337 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 27/155 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ ++L + Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPY 182 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLTKIAPTKPEGVLIDQFTQPDTYY 241 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154 L Q + KG+S+ L++AAASI+A+ Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 276 >gi|145329613|ref|NP_001077956.1| ribonuclease HII family protein [Arabidopsis thaliana] gi|330252564|gb|AEC07658.1| Ribonuclease H2 subunit A [Arabidopsis thaliana] Length = 277 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 73/170 (42%), Gaps = 22/170 (12%) Query: 26 VAGIDEVGRGALAGPVVVAA----IILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG + GP+V I + DSK + +KREELYE + + Sbjct: 16 LMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEEKREELYESLKLDKSL 75 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--------EDLPCQA 133 + ID + L + ++ V+ A +D P E P Sbjct: 76 GWAV---DVIDPRELSAKMLAKVL----DMGVLLTEAYLDTVGDPDKYRIKLSERFPSIK 128 Query: 134 FAVIK-GDSISLSIAAASIIAKVTRDRLMR--IAHKKYPDYGFDSHVGYP 180 F V K DS+ ++ ASI+AKVTRDR ++ + + D + GYP Sbjct: 129 FVVSKKADSLFPIVSGASIVAKVTRDRALKEWLVEETGEDINRNFGSGYP 178 >gi|229135388|ref|ZP_04264177.1| Ribonuclease HIII [Bacillus cereus BDRD-ST196] gi|228648084|gb|EEL04130.1| Ribonuclease HIII [Bacillus cereus BDRD-ST196] Length = 311 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 95/202 (47%), Gaps = 33/202 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT----S 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + E+ +++ Sbjct: 97 ILGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLHVVPY 156 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLTKIAPTKPEGILIDQFTQPDTYY 215 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 L Q + KG+S+ L++AAASI+A+ + D L + A + P G Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMQLPK-GAGK 274 Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196 V AK Q+V KE+ P + Sbjct: 275 QVDIAAAKLIQKVGKERLPEFV 296 >gi|52140950|ref|YP_085879.1| ribonuclease HIII [Bacillus cereus E33L] gi|81685974|sp|Q633N8|RNH3_BACCZ RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|51974419|gb|AAU15969.1| ribonuclease HII [Bacillus cereus E33L] Length = 311 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 27/157 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ ++L + Sbjct: 97 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPY 156 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKLAPTKPEGVLIDQFTQPDTYY 215 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT 156 L Q + KG+S+ L++AAASI+A+ + Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYS 252 >gi|196017000|ref|XP_002118348.1| hypothetical protein TRIADDRAFT_51212 [Trichoplax adhaerens] gi|190579064|gb|EDV19170.1| hypothetical protein TRIADDRAFT_51212 [Trichoplax adhaerens] Length = 299 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 91/189 (48%), Gaps = 43/189 (22%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS----- 78 GIDE GRG + G +V A + G+ DSK ++ R+EL++KI S Sbjct: 32 GIDEAGRGPVLGAMVYGACYYPLSQSEKVKELGVADSKVLTEDMRDELFQKINSDDSVGW 91 Query: 79 --AIISISSASHQYI--DKHNI----HKATLDAIYHAVE-NLQVIPRSALIDGRSIPEDL 129 IIS S S + + K+++ H A ++ I +++ +QV + +D + E+ Sbjct: 92 LVEIISPSDISTKMLARTKYSLNAVSHDAAINLIRQSIQKGVQV--KEIYVDTVGVAENY 149 Query: 130 PCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP--------DYG 172 + + K D++ ++AASIIAKVTRD+++ ++ K+P DYG Sbjct: 150 QNKLSELFPDITIKVTPKADALFPCVSAASIIAKVTRDKVL--SNWKFPEDESYNSSDYG 207 Query: 173 FDSHVGYPT 181 GYP+ Sbjct: 208 ----CGYPS 212 >gi|229087103|ref|ZP_04219253.1| Ribonuclease HIII [Bacillus cereus Rock3-44] gi|228696171|gb|EEL49006.1| Ribonuclease HIII [Bacillus cereus Rock3-44] Length = 338 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 96/202 (47%), Gaps = 33/202 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---- 77 +AG DEVG G GP+ V A+ +D IP G+ DSK ++ + E+ +++ + Sbjct: 123 IAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDVQIAEIAKQLLNVVPY 182 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 183 SSLVLHNEKYNEMFDKGN-NQGKLKALLHNKALTNLLKKIAPTKPEGILIDQFTQPDTYY 241 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 L Q + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 242 KYLAKQKEVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 300 Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196 V AK Q++ KE+ P + Sbjct: 301 QVDIAAAKLIQKLGKERLPEFV 322 >gi|42783728|ref|NP_980975.1| ribonuclease HIII [Bacillus cereus ATCC 10987] gi|73917841|sp|Q72ZI6|RNH3_BACC1 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|42739658|gb|AAS43583.1| ribonuclease HIII [Bacillus cereus ATCC 10987] Length = 311 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 33/202 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ ++L + Sbjct: 97 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPY 156 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTYY 215 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 L Q + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 274 Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196 V AK Q++ KE+ P + Sbjct: 275 QVDIAAAKLIQKLGKERLPEFV 296 >gi|18400719|ref|NP_565584.1| ribonuclease HII family protein [Arabidopsis thaliana] gi|49066054|sp|Q9SEZ6|RNH2A_ARATH RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|26450346|dbj|BAC42289.1| putative ribonuclease large subunit [Arabidopsis thaliana] gi|28973385|gb|AAO64017.1| putative ribonuclease large subunit [Arabidopsis thaliana] gi|330252563|gb|AEC07657.1| Ribonuclease H2 subunit A [Arabidopsis thaliana] Length = 296 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 27/182 (14%) Query: 26 VAGIDEVGRGALAGPVVVAA----IILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG + GP+V I + DSK + +KREELYE + + Sbjct: 16 LMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEEKREELYESLKLDKSL 75 Query: 82 SIS---------SASHQYIDKHNIHKATLDA---IYHAVENLQVIPRSALIDGRSIP--- 126 + SA +K N+++ + ++ + V ++ V+ A +D P Sbjct: 76 GWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPDKY 135 Query: 127 -----EDLPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMR--IAHKKYPDYGFDSHVG 178 E P F V K DS+ ++ ASI+AKVTRDR ++ + + D + G Sbjct: 136 RIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALKEWLVEETGEDINRNFGSG 195 Query: 179 YP 180 YP Sbjct: 196 YP 197 >gi|296505031|ref|YP_003666731.1| ribonuclease HIII [Bacillus thuringiensis BMB171] gi|296326083|gb|ADH09011.1| ribonuclease HIII [Bacillus thuringiensis BMB171] Length = 311 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 27/155 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ ++L + Sbjct: 97 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPY 156 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 215 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154 L Q + KG+S+ L++AAASI+A+ Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 250 >gi|225866529|ref|YP_002751907.1| ribonuclease HIII [Bacillus cereus 03BB102] gi|254808011|sp|C1ETZ4|RNH3_BACC3 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|225790928|gb|ACO31145.1| ribonuclease HIII [Bacillus cereus 03BB102] Length = 311 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 27/155 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ ++L + Sbjct: 97 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPY 156 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 215 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154 L Q + KG+S+ L++AAASI+A+ Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 250 >gi|228993279|ref|ZP_04153195.1| Ribonuclease HIII [Bacillus pseudomycoides DSM 12442] gi|228766347|gb|EEM14990.1| Ribonuclease HIII [Bacillus pseudomycoides DSM 12442] Length = 333 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 27/157 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---- 77 +AG DEVG G GP+ V A+ +D IP G+ DSK ++ + E+ +++ S Sbjct: 118 IAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLSVVPY 177 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ +K N ++ L A+ H A+ NL P LID + P+ Sbjct: 178 SSLVLHNEKYNELFEKGN-NQGKLKALLHNKALTNLLKKIAPTKPEGILIDQFTQPDTYY 236 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT 156 L Q + KG+S+ L++AAASI+A+ + Sbjct: 237 KYLTKQKEVQRENVYFATKGESVHLAVAAASILARYS 273 >gi|156101113|ref|XP_001616250.1| ribonuclease H1 large subunit [Plasmodium vivax SaI-1] gi|148805124|gb|EDL46523.1| ribonuclease H1 large subunit , putative [Plasmodium vivax] Length = 288 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 88/188 (46%), Gaps = 42/188 (22%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI--- 80 GIDE GRG + GP+V A + + I+DSKKIS RE ++ K+ +S++ Sbjct: 20 GIDEAGRGPVLGPMVYAGFYCNKEHEKLLKEMKIDDSKKISEADREMMFHKLNNSSLPFG 79 Query: 81 ----------ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA-----LID--GR 123 IS Q K+N+++ + D ++ VI R +D G+ Sbjct: 80 WRIHVLMPQDISAKMLKKQ---KYNLNEISHDTAISIID--HVISRGCNLTEVFVDTVGK 134 Query: 124 -SIPEDLPCQAFAVIK------GDSISLSIAAASIIAKVTRDRLMRIAHKKYP----DYG 172 S+ E+ + F IK DS+ ++AASI AKVTRD L++ + P D G Sbjct: 135 PSVYEEKLKRLFPHIKCTVKEKADSLYPVVSAASICAKVTRDFLIKKWKYEEPLVNIDKG 194 Query: 173 FDSHVGYP 180 F S GYP Sbjct: 195 FGS--GYP 200 >gi|228948280|ref|ZP_04110563.1| Ribonuclease HIII [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811267|gb|EEM57605.1| Ribonuclease HIII [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 332 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 27/155 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ ++L + Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPY 177 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 178 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLTKIAPTKPEGVLIDQFTQPDTYY 236 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154 L Q + KG+S+ L++AAASI+A+ Sbjct: 237 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 271 >gi|49478678|ref|YP_038604.1| ribonuclease HIII [Bacillus thuringiensis serovar konkukian str. 97-27] gi|73917843|sp|Q6HCX2|RNH3_BACHK RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|49330234|gb|AAT60880.1| ribonuclease HII [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 311 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 27/155 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ ++L + Sbjct: 97 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPY 156 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLTKIAPTKPEGVLIDQFTQPDTYY 215 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154 L Q + KG+S+ L++AAASI+A+ Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 250 >gi|86171485|ref|XP_966221.1| ribonuclease HII, putative [Plasmodium falciparum 3D7] gi|46361187|emb|CAG25051.1| ribonuclease HII, putative [Plasmodium falciparum 3D7] Length = 288 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 83/183 (45%), Gaps = 32/183 (17%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI--- 80 GIDE GRG + GP+V + + + I+DSKKI+ RE+++ K+ +S + Sbjct: 20 GIDEAGRGPVLGPMVYSGFYCNKEHEKLLKEMKIDDSKKITEADREKMFVKLNNSKLPFG 79 Query: 81 ----------ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID--GR-SIPE 127 IS Q + + I T +I V N +D G+ S+ E Sbjct: 80 WRVHILLPQDISAKMLKKQKYNLNEISHDTAISIIEHVINRGCNLTEVFVDTVGKASVYE 139 Query: 128 DLPCQAFAVIK------GDSISLSIAAASIIAKVTRDRLMRIAHKKYP----DYGFDSHV 177 + + F IK DS+ ++AASI AKVTRD L++ + P D GF S Sbjct: 140 EKLQKMFPHIKCTVKEKADSLYPVVSAASICAKVTRDFLLKKWKYEEPIINIDNGFGS-- 197 Query: 178 GYP 180 GYP Sbjct: 198 GYP 200 >gi|228917194|ref|ZP_04080751.1| Ribonuclease HIII [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842395|gb|EEM87486.1| Ribonuclease HIII [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 332 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 27/155 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ ++L + Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPY 177 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 178 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTYY 236 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154 L Q + KG+S+ L++AAASI+A+ Sbjct: 237 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 271 >gi|255549406|ref|XP_002515756.1| ribonuclease hi large subunit, putative [Ricinus communis] gi|223545084|gb|EEF46595.1| ribonuclease hi large subunit, putative [Ricinus communis] Length = 299 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 31/165 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSSA-- 79 + GIDE GRG + GP+V + + DSK + KREEL+E + ++ Sbjct: 18 IMGIDEAGRGPVLGPMVYGCLYCARSYERTLSTLSFADSKTLKEDKREELFENLKANESI 77 Query: 80 -----IISISSASHQYIDKHNIHKATLDAIYHA--------VENLQVIPRSALIDGRS-- 124 +I S + + K+ I+ L+ I H V N V+ +D Sbjct: 78 GWAVDVIDPRELSAKMLQKNKIN---LNEISHESAIGLITRVLNEGVLLTQVYLDTVGDA 134 Query: 125 ------IPEDLPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMR 162 + E P F V K DS+ ++ ASI+AKVTRDR +R Sbjct: 135 EKYRIKLSERFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALR 179 >gi|242094016|ref|XP_002437498.1| hypothetical protein SORBIDRAFT_10g028180 [Sorghum bicolor] gi|241915721|gb|EER88865.1| hypothetical protein SORBIDRAFT_10g028180 [Sorghum bicolor] Length = 297 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 84/187 (44%), Gaps = 37/187 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL--DPNNI--PFGINDSKKISHKKREELYE--KITSS- 78 + GIDE GRG + GP+V + NN DSK + ++REEL+E K+ SS Sbjct: 15 LMGIDEAGRGPVLGPMVYGCMYCARSYNNTLATLKFADSKTLKEEQREELFESLKVNSSI 74 Query: 79 ----AIISISSASHQYIDKHNIHKATLDAIYH--------AVENLQVIPRSALIDGRSIP 126 +I S + + K ++ L+ I H + ++ V+ ID P Sbjct: 75 GWEVDVICPKDLSAKMLRKSKVN---LNEISHNSAMGLVRKLLDMGVLLAEVYIDTVGDP 131 Query: 127 ED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 E P F V K DS+ ++ ASI+AKVTRDR +R + + + + H+ Sbjct: 132 EKYRIKLTEKFPGIKFVVAKKADSLYPVVSGASIVAKVTRDRALR--NWVFDETALNMHM 189 Query: 178 ----GYP 180 GYP Sbjct: 190 KTGSGYP 196 >gi|332797850|ref|YP_004459350.1| ribonuclease HII [Acidianus hospitalis W1] gi|332695585|gb|AEE95052.1| ribonuclease HII [Acidianus hospitalis W1] Length = 192 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 24/188 (12%) Query: 41 VVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITSSAIISISSASH-QYIDKHN 95 +V+A +I+D G+ DSK +S +KRE+L+E I+ A I + ++ ID N Sbjct: 1 MVIAGVIIDEKIEGMLKEVGVKDSKILSREKREKLFEIISEFAEAYIVNKAYPNEIDSSN 60 Query: 96 IHKATLDAIYHAV-ENLQVIPRSALIDGRSIPE-------DLPCQAFAVIKGDSISLSIA 147 +++ T + + +L + P+ ID + +L + V D + + Sbjct: 61 LNELTYSKVIQIIYASLPLHPKIVTIDKVGNEDIVIMKIRELGLKDNVVFNADVKYIEAS 120 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----TAKHQQVIKEK---GPSCIHRLT 200 AASIIAKVTRDR++ K Y D+G GYP T K I EK P I R T Sbjct: 121 AASIIAKVTRDRIIDSLKKIYGDFG----SGYPSDPKTRKWIIEIYEKDKNNPPPIIRRT 176 Query: 201 FRPLRNLS 208 ++ L ++ Sbjct: 177 WKTLLKIA 184 >gi|228923300|ref|ZP_04086588.1| Ribonuclease HIII [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836254|gb|EEM81607.1| Ribonuclease HIII [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 337 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 33/202 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 241 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 L Q + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GASK 300 Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196 V AK Q++ KE+ P + Sbjct: 301 QVDIAAAKLIQKLGKERLPEFV 322 >gi|228960825|ref|ZP_04122460.1| Ribonuclease HIII [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798847|gb|EEM45826.1| Ribonuclease HIII [Bacillus thuringiensis serovar pakistani str. T13001] Length = 332 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 27/155 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 177 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 178 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 236 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154 L Q + KG+S+ L++AAASI+A+ Sbjct: 237 KYLAKQKQVQRENVYFTTKGESVHLAVAAASILAR 271 >gi|228974659|ref|ZP_04135225.1| Ribonuclease HIII [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228785062|gb|EEM33075.1| Ribonuclease HIII [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 337 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 33/202 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 241 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 L Q + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 300 Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196 V AK Q++ KE+ P + Sbjct: 301 QVDIAAAKLIQKLGKERLPEFV 322 >gi|228941735|ref|ZP_04104282.1| Ribonuclease HIII [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228981253|ref|ZP_04141553.1| Ribonuclease HIII [Bacillus thuringiensis Bt407] gi|228778453|gb|EEM26720.1| Ribonuclease HIII [Bacillus thuringiensis Bt407] gi|228817947|gb|EEM64025.1| Ribonuclease HIII [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 332 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 33/202 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 177 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 178 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 236 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 L Q + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 237 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 295 Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196 V AK Q++ KE+ P + Sbjct: 296 QVDIAAAKLIQKLGKERLPEFV 317 >gi|196042128|ref|ZP_03109412.1| ribonuclease HIII [Bacillus cereus NVH0597-99] gi|229093650|ref|ZP_04224750.1| Ribonuclease HIII [Bacillus cereus Rock3-42] gi|196027064|gb|EDX65687.1| ribonuclease HIII [Bacillus cereus NVH0597-99] gi|228689737|gb|EEL43544.1| Ribonuclease HIII [Bacillus cereus Rock3-42] Length = 337 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 27/155 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 241 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154 L Q + KG+S+ L++AAASI+A+ Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 276 >gi|221057860|ref|XP_002261438.1| ribonuclease H1 large subunit [Plasmodium knowlesi strain H] gi|194247443|emb|CAQ40843.1| ribonuclease H1 large subunit, putative [Plasmodium knowlesi strain H] Length = 288 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 80/184 (43%), Gaps = 34/184 (18%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI--- 80 GIDE GRG + GP+V A + + I+DSKKIS RE ++ K+ +S + Sbjct: 20 GIDEAGRGPVLGPMVYAGFYCNKEHEKLLKEMKIDDSKKISEADREMMFHKLNNSKLPFG 79 Query: 81 ----------ISISSASHQYIDKHNI-HKATLDAIYHAVE---NLQVIPRSALIDGRSIP 126 IS Q + + I H + I H + NL + + Sbjct: 80 WRIHVLMPQDISAKMLKKQKYNLNEISHDTAISIINHVISRGCNLTEVFVDTVGKANVYE 139 Query: 127 EDLPCQAFAVIK------GDSISLSIAAASIIAKVTRDRLMRIAHKKYP----DYGFDSH 176 E L + F IK DS+ ++AASI AKVTRD L++ + P D GF S Sbjct: 140 EKL-TKLFPHIKCTVREKADSLYPVVSAASICAKVTRDFLIKKWKYEEPLVNIDKGFGS- 197 Query: 177 VGYP 180 GYP Sbjct: 198 -GYP 200 >gi|229129840|ref|ZP_04258806.1| Ribonuclease HIII [Bacillus cereus BDRD-Cer4] gi|228653531|gb|EEL09403.1| Ribonuclease HIII [Bacillus cereus BDRD-Cer4] Length = 337 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 27/155 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 241 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154 L Q + KG+S+ L++AAASI+A+ Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 276 >gi|229048264|ref|ZP_04193832.1| Ribonuclease HIII [Bacillus cereus AH676] gi|229147115|ref|ZP_04275474.1| Ribonuclease HIII [Bacillus cereus BDRD-ST24] gi|228636364|gb|EEK92835.1| Ribonuclease HIII [Bacillus cereus BDRD-ST24] gi|228722989|gb|EEL74366.1| Ribonuclease HIII [Bacillus cereus AH676] Length = 337 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 33/202 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 241 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 L Q + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 300 Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196 V AK Q++ KE+ P + Sbjct: 301 QVDIAAAKLIQKLGKERLPEFV 322 >gi|229158161|ref|ZP_04286229.1| Ribonuclease HIII [Bacillus cereus ATCC 4342] gi|228625323|gb|EEK82082.1| Ribonuclease HIII [Bacillus cereus ATCC 4342] Length = 337 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 27/155 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 241 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154 L Q + KG+S+ L++AAASI+A+ Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 276 >gi|228903073|ref|ZP_04067210.1| Ribonuclease HIII [Bacillus thuringiensis IBL 4222] gi|228856559|gb|EEN01082.1| Ribonuclease HIII [Bacillus thuringiensis IBL 4222] Length = 337 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 27/155 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKSLNDDQITAIAKQLLHVVPY 182 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLGKMAPTKPEGVLIDQFTQPDTYY 241 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154 L Q + KG+S+ L++AAASI+A+ Sbjct: 242 KYLTKQKQVQRENVYFATKGESVHLAVAAASILAR 276 >gi|229072058|ref|ZP_04205267.1| Ribonuclease HIII [Bacillus cereus F65185] gi|228710992|gb|EEL62958.1| Ribonuclease HIII [Bacillus cereus F65185] Length = 337 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 33/202 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 241 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 L Q + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 300 Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196 V AK Q++ KE+ P + Sbjct: 301 QVDIAAAKLIQKLGKERLPEFV 322 >gi|228967653|ref|ZP_04128674.1| Ribonuclease HIII [Bacillus thuringiensis serovar sotto str. T04001] gi|228792029|gb|EEM39610.1| Ribonuclease HIII [Bacillus thuringiensis serovar sotto str. T04001] Length = 332 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 27/155 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 177 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 178 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLGKMAPTKPEGVLIDQFTQPDTYY 236 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154 L Q + KG+S+ L++AAASI+A+ Sbjct: 237 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 271 >gi|301056063|ref|YP_003794274.1| ribonuclease HIII [Bacillus anthracis CI] gi|300378232|gb|ADK07136.1| ribonuclease HIII [Bacillus cereus biovar anthracis str. CI] Length = 311 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 27/157 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ ++L + Sbjct: 97 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPY 156 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPDGVLIDQFTQPDTYY 215 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT 156 L Q + KG+S+ L++AAASI+A+ + Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYS 252 >gi|218899710|ref|YP_002448121.1| ribonuclease HIII [Bacillus cereus G9842] gi|218544745|gb|ACK97139.1| ribonuclease HIII [Bacillus cereus G9842] Length = 332 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 27/155 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 177 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 178 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLGKMAPTKPEGVLIDQFTQPDTYY 236 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154 L Q + KG+S+ L++AAASI+A+ Sbjct: 237 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 271 >gi|228910380|ref|ZP_04074195.1| Ribonuclease HIII [Bacillus thuringiensis IBL 200] gi|228849146|gb|EEM93985.1| Ribonuclease HIII [Bacillus thuringiensis IBL 200] Length = 332 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 27/155 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 177 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 178 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 236 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154 L Q + KG+S+ L++AAASI+A+ Sbjct: 237 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 271 >gi|324328447|gb|ADY23707.1| ribonuclease HIII [Bacillus thuringiensis serovar finitimus YBT-020] Length = 311 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 27/157 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 97 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 156 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 215 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT 156 L Q + KG+S+ L++AAASI+A+ + Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYS 252 >gi|30022631|ref|NP_834262.1| ribonuclease HIII [Bacillus cereus ATCC 14579] gi|73917842|sp|Q817J0|RNH3_BACCR RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|29898189|gb|AAP11463.1| Ribonuclease HII [Bacillus cereus ATCC 14579] Length = 311 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 33/202 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 97 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 156 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 215 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 L Q + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 274 Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196 V AK Q++ KE+ P + Sbjct: 275 QVDIAAAKLIQKLGKERLPEFV 296 >gi|326942340|gb|AEA18236.1| ribonuclease HIII [Bacillus thuringiensis serovar chinensis CT-43] Length = 311 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 33/202 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 97 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 156 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 215 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 L Q + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 274 Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196 V AK Q++ KE+ P + Sbjct: 275 QVDIAAAKLIQKLGKERLPEFV 296 >gi|229175263|ref|ZP_04302778.1| Ribonuclease HIII [Bacillus cereus MM3] gi|228608095|gb|EEK65402.1| Ribonuclease HIII [Bacillus cereus MM3] Length = 332 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 27/155 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 177 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 178 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTYY 236 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154 L Q + KG+S+ L++AAASI+A+ Sbjct: 237 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 271 >gi|228987805|ref|ZP_04147914.1| Ribonuclease HIII [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771853|gb|EEM20310.1| Ribonuclease HIII [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 337 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 33/202 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 241 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 L Q + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 242 KYLAKQKLVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 300 Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196 V AK Q++ KE+ P + Sbjct: 301 QVDIAAAKLIQKLGKERLPEFV 322 >gi|229026003|ref|ZP_04182387.1| Ribonuclease HIII [Bacillus cereus AH1272] gi|228735284|gb|EEL85895.1| Ribonuclease HIII [Bacillus cereus AH1272] Length = 332 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 27/155 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 177 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 178 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTYY 236 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154 L Q + KG+S+ L++AAASI+A+ Sbjct: 237 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 271 >gi|229019776|ref|ZP_04176579.1| Ribonuclease HIII [Bacillus cereus AH1273] gi|228741501|gb|EEL91698.1| Ribonuclease HIII [Bacillus cereus AH1273] Length = 337 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 27/155 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTYY 241 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154 L Q + KG+S+ L++AAASI+A+ Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 276 >gi|229112020|ref|ZP_04241563.1| Ribonuclease HIII [Bacillus cereus Rock1-15] gi|228671343|gb|EEL26644.1| Ribonuclease HIII [Bacillus cereus Rock1-15] Length = 337 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 27/155 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 241 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAK 154 L Q + KG+S+ L++AAASI+A+ Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILAR 276 >gi|229180875|ref|ZP_04308210.1| Ribonuclease HIII [Bacillus cereus 172560W] gi|228602432|gb|EEK59918.1| Ribonuclease HIII [Bacillus cereus 172560W] Length = 337 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 27/157 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 241 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT 156 L Q + KG+S+ L++AAASI+A+ + Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYS 278 >gi|206969869|ref|ZP_03230823.1| ribonuclease HIII [Bacillus cereus AH1134] gi|206735557|gb|EDZ52725.1| ribonuclease HIII [Bacillus cereus AH1134] Length = 311 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 33/202 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 97 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 156 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 215 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 L Q + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 274 Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196 V AK Q++ KE+ P + Sbjct: 275 QVDIAAAKLIQKLGKERLPEFV 296 >gi|228954825|ref|ZP_04116845.1| Ribonuclease HIII [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804814|gb|EEM51413.1| Ribonuclease HIII [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 337 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 33/202 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQIIAIAKQLLHVVPY 182 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 241 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 L Q + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 300 Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196 V AK Q++ KE+ P + Sbjct: 301 QVDIAAAKLIQKLGKERLPEFV 322 >gi|229081809|ref|ZP_04214301.1| Ribonuclease HIII [Bacillus cereus Rock4-2] gi|228701397|gb|EEL53891.1| Ribonuclease HIII [Bacillus cereus Rock4-2] Length = 332 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 33/202 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 177 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 178 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 236 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 L Q + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 237 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 295 Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196 V AK Q++ KE+ P + Sbjct: 296 QVDIAAAKLIQKLGKERLPEFV 317 >gi|229032202|ref|ZP_04188175.1| Ribonuclease HIII [Bacillus cereus AH1271] gi|228728982|gb|EEL79985.1| Ribonuclease HIII [Bacillus cereus AH1271] Length = 337 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 27/157 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKKIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTYY 241 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT 156 L Q + KG+S+ L++AAASI+A+ + Sbjct: 242 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYS 278 >gi|255640332|gb|ACU20454.1| unknown [Glycine max] Length = 219 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 31/165 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYE--KITSSA 79 V GIDE GRG + GP+V + + + DSK + +KREEL+E K+ S Sbjct: 15 VMGIDEAGRGPVLGPMVYGCLYCSQSYLKTLSTLSFADSKTLKEEKREELFETLKLNDSI 74 Query: 80 -----IISISSASHQYIDKHNIHKATLDAIYHA--------VENLQVIPRSALID----- 121 +I S + + K+ I+ L+ I H+ V + V+ ID Sbjct: 75 GWDVDVIDPRELSAKMLKKNKIN---LNEISHSSAMGLIDRVLKMGVLLTEVYIDTVGDA 131 Query: 122 GR---SIPEDLPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMR 162 G+ + P F V K DS+ ++ ASI+AKVTRDR R Sbjct: 132 GKYEMKLSNSFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRASR 176 >gi|170016688|ref|YP_001727607.1| ribonuclease H [Leuconostoc citreum KM20] gi|238688947|sp|B1MXB1|RNH3_LEUCK RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|169803545|gb|ACA82163.1| Ribonuclease H [Leuconostoc citreum KM20] Length = 308 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 29/171 (16%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA 79 W V G DEVG GA GP+ AA+ + N++ + GI DSK ++ K ++ +I Sbjct: 93 WSVIGSDEVGAGAYFGPLTTAAVFVSKNDLDWVKALGIADSKTLTDAKMRDIAPEIIQRL 152 Query: 80 ---IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA--- 133 ++++ + + HN + L AI H +V+ + A I +I D QA Sbjct: 153 PHHVVNLLPEKYNALQPHN-NVNQLKAISHNFALHKVLEKIAPITPDAILIDQFAQATTY 211 Query: 134 -----------------FAVIKGDSISLSIAAASIIAKVTR-DRLMRIAHK 166 + KG+ LS+AAASI+A+V D ++ ++H+ Sbjct: 212 FNYLSKAQQSPVIRQNVYFTTKGEQYHLSVAAASILARVVELDTMVALSHE 262 >gi|228999329|ref|ZP_04158909.1| Ribonuclease HIII [Bacillus mycoides Rock3-17] gi|228760526|gb|EEM09492.1| Ribonuclease HIII [Bacillus mycoides Rock3-17] Length = 338 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 96/202 (47%), Gaps = 33/202 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---- 77 +AG DEVG G GP+ V A+ +D IP G+ DSK ++ + E+ +++ + Sbjct: 123 IAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLNVVPY 182 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSIPED-- 128 S+++ + ++ +K N ++ L A+ H A+ NL P LID + P+ Sbjct: 183 SSLVLHNEKYNELFEKGN-NQGKLKALLHNKALTNLLKKIAPTKPEGILIDQFTQPDTYY 241 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 L Q + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 242 KYLTKQKEVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 300 Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196 V AK Q++ KE+ P + Sbjct: 301 QVDIAAAKLIQKLGKERLPEFV 322 >gi|118355616|ref|XP_001011067.1| ribonuclease HII family protein [Tetrahymena thermophila] gi|89292834|gb|EAR90822.1| ribonuclease HII family protein [Tetrahymena thermophila SB210] Length = 284 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 90/195 (46%), Gaps = 32/195 (16%) Query: 19 REKNMWPVAGIDEVGRGALAGPVV----VAAIILDPNNIPFGINDSKKISHKKREELYEK 74 ++KN+ V GIDE GRG + GP+V V I +P G NDSK+++ +KR++LY + Sbjct: 7 KKKNLDWVMGIDEAGRGPVLGPMVYGCCVWPIQYEPELKLEGFNDSKQLTEQKRDQLYAR 66 Query: 75 ITSSA---------IISISSASHQYIDKH--NIHKATLDAIYHAVEN------------L 111 + I+S S++ + K+ ++++ + +A Y +++ L Sbjct: 67 MEELKNDKLYFEVRILSAEFLSNRMLAKNRDSLNELSFNAAYSLIDSVMSQGFNVTQVFL 126 Query: 112 QVIPRSALIDGRSIPE---DLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + + + + P F V K D+ + AASI AKVTRD + + Sbjct: 127 DTVGKEETYQAKLYQDYKYTYPQLKFTVSSKADAKFPVVGAASICAKVTRDLQITNNDMR 186 Query: 168 YP-DYGFDSHVGYPT 181 P D + GYP+ Sbjct: 187 EPLDLSKATGSGYPS 201 >gi|229006884|ref|ZP_04164516.1| Ribonuclease HIII [Bacillus mycoides Rock1-4] gi|228754377|gb|EEM03790.1| Ribonuclease HIII [Bacillus mycoides Rock1-4] Length = 333 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 96/202 (47%), Gaps = 33/202 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---- 77 +AG DEVG G GP+ V A+ +D IP G+ DSK ++ + E+ +++ + Sbjct: 118 IAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLNVVPY 177 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ +K N ++ L A+ H A+ NL P LID + P+ Sbjct: 178 SSLVLHNEKYNELFEKGN-NQGKLKALLHNKALTNLLKKIAPTKPEGILIDQFTQPDTYY 236 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 L Q + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 237 KYLTKQKEVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 295 Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196 V AK Q++ KE+ P + Sbjct: 296 QVDIAAAKLIQKLGKERLPEFV 317 >gi|229062239|ref|ZP_04199561.1| Ribonuclease HIII [Bacillus cereus AH603] gi|228717067|gb|EEL68746.1| Ribonuclease HIII [Bacillus cereus AH603] Length = 312 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 33/202 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT----S 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + E+ +++ Sbjct: 97 ILGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLHVVPY 156 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 157 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKIAPTKPEGILIDQFTQPDTYY 215 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 L Q + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 216 KYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGK 274 Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196 V AK Q+V KE+ P + Sbjct: 275 QVDIAAAKLIQKVGKERLPEFV 296 >gi|145640736|ref|ZP_01796319.1| ribonuclease HII [Haemophilus influenzae R3021] gi|145274662|gb|EDK14525.1| ribonuclease HII [Haemophilus influenzae 22.4-21] Length = 56 Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 29/41 (70%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 +AG+DEVGRG L G VV AA+ILDPNN G+ DSK K Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKNFLRK 51 >gi|68067767|ref|XP_675818.1| ribonuclease H1 large subunit [Plasmodium berghei strain ANKA] gi|56495218|emb|CAH97375.1| ribonuclease H1 large subunit, putative [Plasmodium berghei] Length = 288 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 81/185 (43%), Gaps = 36/185 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI--- 80 GIDE GRG + GP+V + + I+DSKKI+ RE+++ K+ +S + Sbjct: 20 GIDEAGRGPVLGPMVYSGFYCKKEDEKLLKEMKIDDSKKITEHDREKMFYKLNNSKLPFA 79 Query: 81 ----------ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID--GR-SIPE 127 IS Q + + I T +I V N +D G+ S+ E Sbjct: 80 WRVHILMPQDISAKMLKRQKYNLNEISHDTAISIIQHVLNRGCNLTEVFVDTVGKASVYE 139 Query: 128 DLPCQAFAVIK------GDSISLSIAAASIIAKVTRDRLMRIAHKKYP------DYGFDS 175 + + F IK DS+ ++AASI AKVTRD L I KY D GF S Sbjct: 140 EKLQKLFPNIKCVVKEKADSLYPVVSAASICAKVTRDFL--IKKWKYEEHIINIDKGFGS 197 Query: 176 HVGYP 180 GYP Sbjct: 198 --GYP 200 >gi|226500696|ref|NP_001152248.1| ribonuclease HI large subunit [Zea mays] gi|195654267|gb|ACG46601.1| ribonuclease HI large subunit [Zea mays] Length = 284 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 74/165 (44%), Gaps = 30/165 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL--DPNNI--PFGINDSKKISHKKREELYE--KITSSA 79 + GIDE GRG + GP+V + NN DSK + ++REEL+E K+ SS Sbjct: 15 LMGIDEAGRGPVLGPMVYGCMYCAYSYNNTLATLKFADSKTLKEEQREELFESLKVNSSI 74 Query: 80 -----IISISSASHQYIDKHNIHKATLDAIYH--------AVENLQVIPRSALIDGRSIP 126 +I S + + K + K L+ I H V + V+ +D P Sbjct: 75 RWEVDVICPKDISAKMLKKKS--KVNLNEISHNSAMGLVRKVLRMGVLLAEVYVDTVGDP 132 Query: 127 EDLPCQ--------AFAVIK-GDSISLSIAAASIIAKVTRDRLMR 162 E + F V K DS+ I+ ASI+AKVTRDR +R Sbjct: 133 EKYRTKLTEKFIGIKFVVAKKADSLYPVISGASIVAKVTRDRALR 177 >gi|229163546|ref|ZP_04291496.1| Ribonuclease HIII [Bacillus cereus R309803] gi|228619928|gb|EEK76804.1| Ribonuclease HIII [Bacillus cereus R309803] Length = 332 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 27/157 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + ++L + Sbjct: 118 IVGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 177 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 178 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYY 236 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT 156 L Q + KG+S+ L++AAASI+A+ + Sbjct: 237 KYLAKQKEVQRENVYFATKGESVHLAVAAASILARYS 273 >gi|289582357|ref|YP_003480823.1| ribonuclease HII [Natrialba magadii ATCC 43099] gi|289531910|gb|ADD06261.1| ribonuclease HII [Natrialba magadii ATCC 43099] Length = 221 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 24/186 (12%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAIISISSA 86 G+DE G+G + G + AA+ ++ + P GI DSK+++ +R+EL + I + A Sbjct: 4 GVDEAGKGPVLGSMFAAAVHVERETVLPDGIADSKRLTPARRDELAATLREDDRIGVGVA 63 Query: 87 --SHQYIDKHNIHKATLDAIYHAVENLQVI--------PRSALIDGRSIPED-------- 128 + ID +L HA E ++ + P + L D D Sbjct: 64 EITTAQIDDPETDMNSLSVRAHA-EAIEAVAADTVLEAPITGLCDACDTDADRFARRVAD 122 Query: 129 ---LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 L C A D S + AASIIAKV RD + +PD G GYP+ + Sbjct: 123 RCGLECTISAEHGADDDSPIVGAASIIAKVERDTHVESVSAAFPDCG-PVGSGYPSDPNT 181 Query: 186 QVIKEK 191 + E Sbjct: 182 RAFLES 187 >gi|262200028|ref|YP_003271237.1| ribonuclease HII/HIII [Haliangium ochraceum DSM 14365] gi|262083375|gb|ACY19344.1| ribonuclease HII/HIII [Haliangium ochraceum DSM 14365] Length = 246 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 29/185 (15%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKI-----SHKKREELYEKITSS 78 GIDE GRG + GP+V+AA+ LD + G+ DSK + R EL ++++ Sbjct: 19 GIDEAGRGPVLGPMVMAAVCLDSGGARWLTRTGVRDSKAFGASSKARSARAELAAEVSAR 78 Query: 79 AIISISSASHQYID----KHNIHKATLDAIYHAVENLQVIPRSALIDG---------RSI 125 A+ A Q ID + + L+ + + Q+I R+ +D R + Sbjct: 79 AV----HAEVQVIDVAVIDRRVRRHELNLLEREIAE-QLIARAPAVDAIIADGKNLFRPL 133 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR-IAHKKYPDYGFDSHVGYPTAKH 184 + P A G++ S+AAASI+AK RD L IA + P +G GY Sbjct: 134 SQRYP-HLEACDGGEARHASVAAASILAKHRRDELFACIAQRYQPLFGELRGGGYVNEAT 192 Query: 185 QQVIK 189 ++ ++ Sbjct: 193 RRFLR 197 >gi|198428317|ref|XP_002127465.1| PREDICTED: similar to ribonuclease H2, large subunit [Ciona intestinalis] Length = 292 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 78/181 (43%), Gaps = 29/181 (16%) Query: 28 GIDEVGRGALAGPVVVAA----IILDPNNIPFGINDSKKISHKKREELYEK--------- 74 GIDE GRG + GP+V A+ I G +DSK + ++RE L+E Sbjct: 32 GIDEAGRGPVLGPMVYASCFTPISCKDKLAGLGCDDSKVLKEEQRESLFETLNKASEYIG 91 Query: 75 ----ITSSAIISISSASHQYIDKHNI-HKATLDAIYHAVENLQVIPRSALIDGRSIPED- 128 I S A IS S + ++I H +D I A++ L V +D P+ Sbjct: 92 WMIHILSPAYISTSMLGRSKYNLNSISHDTAIDLIRSALK-LGVEVTEVYVDTVGPPQTY 150 Query: 129 -------LPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMR-IAHKKYPDYGFDSHVGY 179 P F V K DS ++AASI AKV RD+ ++ ++ PD GY Sbjct: 151 AEKLKKIFPSIKFTVEKKADSKYPVVSAASICAKVCRDKAVKEWRFRENPDTDTKYGSGY 210 Query: 180 P 180 P Sbjct: 211 P 211 >gi|300702211|ref|XP_002995135.1| hypothetical protein NCER_102091 [Nosema ceranae BRL01] gi|239603960|gb|EEQ81464.1| hypothetical protein NCER_102091 [Nosema ceranae BRL01] Length = 235 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 19/153 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + G+DE GRG + G +V ++ + +N+P + DSK ++ K R +++ +T + Sbjct: 19 IVGVDEAGRGPVIGYMVYCVMVFEVDNVPKNLKDSKMLTEKMRNDIF--VTLKDYNYAYT 76 Query: 86 ASH-QYIDKHNIHKATLDAI-YHAVENLQVIPRSAL--IDGRSIPEDLPCQAFAVI---- 137 A H YI + L+ I ++ V NL + +A I+G I C Sbjct: 77 ALHPSYITTKMLSNVNLNDISWNTVLNLLKLVCNAYTNIEGIFIDAIGTCDKLKEFLELN 136 Query: 138 ---------KGDSISLSIAAASIIAKVTRDRLM 161 K DS ++ ASI+AKVTRD L+ Sbjct: 137 IKHKCTVESKADSKYPVVSGASIVAKVTRDDLL 169 >gi|281202692|gb|EFA76894.1| hypothetical protein PPL_09646 [Polysphondylium pallidum PN500] Length = 1257 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 33/165 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS------ 77 GIDE GRG + GP+V AA + N+ +DSKK++ +RE L++ I Sbjct: 996 GIDEAGRGPVLGPLVYAACYVPDCNLERMRKLRFDDSKKLTEAQRETLFKTILGNYELLG 1055 Query: 78 --SAIISISSASHQYIDKHNIHKATLDAIYH-AVENL--QVIPR-----SALIDGRSIPE 127 S + S S + + K + +LD+I H + NL QV+ + S +D P Sbjct: 1056 FVSDVNEPSMLSEKMLSKQQV---SLDSISHGSAFNLIQQVLDKGYNIESLYVDTVGPPA 1112 Query: 128 DLPCQ---AFAVI-------KGDSISLSIAAASIIAKVTRDRLMR 162 + AF I K DS+ ++AASI AKV RDR+++ Sbjct: 1113 KYEAKIRVAFPSIKNVVVSKKADSLYPIVSAASICAKVIRDRIIK 1157 >gi|81428005|ref|YP_395004.1| ribonuclease HIII [Lactobacillus sakei subsp. sakei 23K] gi|78609646|emb|CAI54692.1| Ribonuclease HIII (RNase HIII) [Lactobacillus sakei subsp. sakei 23K] Length = 305 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 28/157 (17%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA 79 W V G DEVG G+ GP+ +AA+ + N+ F G+ DSK ++ + +++ K+ + Sbjct: 90 WSVIGSDEVGNGSYFGPLTIAAVYVSQENLSFVRNLGVADSKTLTDAQIDQMAIKMMTKL 149 Query: 80 ---IISISSASHQYI-DKHNIHKATLDAIYHAVENLQVI-------PRSALIDG------ 122 I++I + + ++ NI K + A+ H L+V+ P+ LID Sbjct: 150 PYHIVNIMPQKYNQVHEQMNIEK--MKAVSHNFALLKVLKKIQPDQPQGILIDQFEPRAT 207 Query: 123 -----RSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 + P L + K + L++AAASIIA+ Sbjct: 208 YYRYLKDEPVVLRDNVYFTTKAEQFHLAVAAASIIAR 244 >gi|329947878|ref|ZP_08294810.1| ribonuclease HII [Actinomyces sp. oral taxon 170 str. F0386] gi|328523502|gb|EGF50600.1| ribonuclease HII [Actinomyces sp. oral taxon 170 str. F0386] Length = 240 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 105/226 (46%), Gaps = 36/226 (15%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISH 65 RP LE + E + + V G+DEVGRGALAGPV V I+ + P + DSK+++ Sbjct: 8 RPDRSLENELLEAHEY-VGGLDEVGRGALAGPVSVGLAIVGRCTDDAFPVDLADSKQLTA 66 Query: 66 KKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQ-------VIPRS 117 + R +L E + + +++ AS ID+ I A A A+ + +I Sbjct: 67 RMRTDLVEPVRGWLLDHAVAHASPAEIDERGIVGALRLAGRRALRQVADRGHAPGIIILD 126 Query: 118 ALIDGRSIPE-DL--------PCQAF-------------AVIKGDSISLSIAAASIIAKV 155 + D + P+ DL P QA+ +K D+ +AAAS++AKV Sbjct: 127 GVADWLTAPQPDLLTTWGDGQPSQAWHEATAEPPTPPVRMEVKADARCAVVAAASVLAKV 186 Query: 156 TRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 RD LM P YG+ S+ GY + H + + G S HR ++ Sbjct: 187 ERDSLM--TDLTDPGYGWASNKGYASPAHVAGLADLGASDQHRRSW 230 >gi|73670221|ref|YP_306236.1| ribonuclease HII [Methanosarcina barkeri str. Fusaro] gi|97182902|sp|Q468N6|RNH2_METBF RecName: Full=Ribonuclease HII; Short=RNase HII gi|72397383|gb|AAZ71656.1| RNase HII [Methanosarcina barkeri str. Fusaro] Length = 224 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 86/181 (47%), Gaps = 28/181 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-- 79 +AGIDE G+G + GP+ + + ++ + G+ DSKK++ KKRE+L +I A Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKIEESRAHILKVLGVADSKKLTPKKREQLAAQIKKHADG 62 Query: 80 --IISISSASHQYIDK-HNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDLPCQ- 132 ++ +S + + K +++ + +E L+ + +A ++ ++ Q Sbjct: 63 FFVLEVSPSQIDELRKIMTMNEIMVVCFSKVLEQLKPDLLYADAADVNAERFATNIRKQY 122 Query: 133 ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 ++ + D+ ++AASIIAKV RD L+ K ++G D GYP Sbjct: 123 SKTNPDHAKEIEIISMHQADATYPVVSAASIIAKVRRDELIEELKK---EWGLDFGSGYP 179 Query: 181 T 181 + Sbjct: 180 S 180 >gi|21593541|gb|AAM65508.1| putative ribonuclease large subunit [Arabidopsis thaliana] Length = 280 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 27/180 (15%) Query: 28 GIDEVGRGALAGPVVVAA----IILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 GIDE GRG + GP+V I + DSK + +KRE+LYE + + Sbjct: 2 GIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEEKREDLYESLKLDKSLGW 61 Query: 84 S---------SASHQYIDKHNIHKATLDA---IYHAVENLQVIPRSALIDGRSIP----- 126 + SA +K N+++ + ++ + V ++ V+ A +D P Sbjct: 62 AVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPDKYKI 121 Query: 127 ---EDLPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMR--IAHKKYPDYGFDSHVGYP 180 E P F V K DS+ ++ ASI+AKVTRDR ++ + + D + GYP Sbjct: 122 KLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALKEWLVEETGEDINRNFGSGYP 181 >gi|150401039|ref|YP_001324805.1| ribonuclease HII [Methanococcus aeolicus Nankai-3] gi|189043622|sp|A6UUM1|RNH2_META3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|150013742|gb|ABR56193.1| ribonuclease HII [Methanococcus aeolicus Nankai-3] Length = 277 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 91/204 (44%), Gaps = 51/204 (25%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 + G+DE GRG + GP+V+A + + ++ I DSKK S +REEL+E I ++ + Sbjct: 22 IIGLDEAGRGPVLGPMVIALVKIKGQDLKNFEKLDIKDSKKHSKNRREELFEMIINNYDV 81 Query: 82 SISSASHQYIDKH----NIHKATLDAIYHAV------------ENLQV---IPRSAL-ID 121 + IDK N++K L A + EN ++ P+ + ID Sbjct: 82 RYEILEAKTIDKLMNTINLNKIELMAFTKLINSVLKEEYPNYKENSKIQTATPQIEIYID 141 Query: 122 GRSIPEDLPCQAFA------VIKGDSISLSI-------------AAASIIAKVTRDRLMR 162 S E +AFA +I D ++ I +AASIIAKV RDR + Sbjct: 142 ACSSNE----KAFANQIKSKLIVNDENNIKIIAEHKADENYKIVSAASIIAKVIRDRKIE 197 Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQ 186 K Y + G GYP+ K Q Sbjct: 198 EYKKIYGEIG----SGYPSDKITQ 217 >gi|56754417|gb|AAW25396.1| SJCHGC03278 protein [Schistosoma japonicum] Length = 289 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 31/183 (16%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-----S 78 GIDE GRG + GP+V A + N + G+ DSK +S +RE+L + + + S Sbjct: 3 GIDEAGRGPVLGPMVYACALSPINRLNELTTIGLADSKTLSEIQREKLLQDMLNKCDWMS 62 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVENLQVIPRSAL------IDGRSIPEDLP 130 A++ + S + + K +L+ I H A++ +Q + S + +D E Sbjct: 63 AVVHVISPVYITEKMLDRSKTSLNVISHDSAIQLIQTVLDSGINLVEVYVDTVGKAEHYE 122 Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKK----YPDYGFDSHV 177 + + K D ++AASI AKVTRDR++++ K+ PD G Sbjct: 123 AKLQNLFPQLKIRVESKADDTYPIVSAASIFAKVTRDRILQMWPKEERGNVPD-GTGLGS 181 Query: 178 GYP 180 GYP Sbjct: 182 GYP 184 >gi|325960150|ref|YP_004291616.1| ribonuclease Hii [Methanobacterium sp. AL-21] gi|325331582|gb|ADZ10644.1| ribonuclease HII [Methanobacterium sp. AL-21] Length = 204 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 25/175 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI- 80 + GIDE GRG++ GP+VV + ++ + + + DSKK++ K+R LY KI A Sbjct: 3 IVGIDEAGRGSVLGPLVVCGVSIEEERLKYLERLKLKDSKKVTPKRRIVLYRKIKKIADC 62 Query: 81 --ISISSASHQYIDKHNIHKATLD--AIYHAVEN----------LQVIPRSALIDGRSIP 126 + IS+A + +++ ++ AI + N + V P + + Sbjct: 63 HPVHISAADIDLLRSKDVNLNEIEKIAIKQIIGNCDPDISYIDCIDVKPERFTNEIENFQ 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 E+L + A D ++AASI+AKV RD+ + K++ + G GYP+ Sbjct: 123 ENL--KVVAEHGADDTYPIVSAASIVAKVERDQEISRLKKEFGEIGS----GYPS 171 >gi|154686997|ref|YP_001422158.1| ribonuclease HIII [Bacillus amyloliquefaciens FZB42] gi|166226670|sp|A7Z7F1|RNH3_BACA2 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|154352848|gb|ABS74927.1| RnhC [Bacillus amyloliquefaciens FZB42] Length = 313 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 90/206 (43%), Gaps = 38/206 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS--- 78 V G DEVG G GP+ VA D + G+ DSK + + E+ + + + Sbjct: 96 VIGSDEVGTGDYFGPITVACAYADKTKLSLMKELGVKDSKDLKDPQIIEIAKLLIKTIPY 155 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALID---------- 121 +++ + + + + + + + + A+ H A+ NL V P + LID Sbjct: 156 SLLVLKNEKYNQMQEKGMSQGKMKALLHNQAISNLLRKMNGVKPEAILIDQFAEPGIYFK 215 Query: 122 ---GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK----VTRDRLMRIAHKKYPDYGFD 174 GR I ++ + F K +SI LS+AAASIIA+ + D+L R A P G Sbjct: 216 HLSGRDIVKE---KTFFSTKAESIHLSVAAASIIARYSFLIEMDKLSREAGMTIPK-GAG 271 Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLT 200 HV AK +I KG + T Sbjct: 272 PHVDEAAAK---LIINKGEGALRTFT 294 >gi|169806222|ref|XP_001827856.1| ribonuclease HII [Enterocytozoon bieneusi H348] gi|161779304|gb|EDQ31327.1| ribonuclease HII [Enterocytozoon bieneusi H348] Length = 252 Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 105/231 (45%), Gaps = 36/231 (15%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREEL 71 +L + ++E + GIDE GRG + GP+V AA ++ N DSK+++ R+ Sbjct: 2 KLFSNIKETTEEVIVGIDEAGRGPVIGPMVYAAYVMHTNERRIRQFIDSKQLTPNTRKNY 61 Query: 72 YEKITSSAIISISSAS-HQYIDKH--NIHK-------ATLDAIYHAVENLQVIPRSALID 121 Y + + A I I Y++ H N+++ L+ I + +N++++ AL + Sbjct: 62 YATMMNFAYIVIEPIYITTYMNNHIKNLNQIAEEAVVQLLNEINNKCKNVKMVYIDALGN 121 Query: 122 GRSIPEDLPCQ---AFAV-IKGDSISLSIAAASIIAKVTRDRLM-----RIAHKKYPDYG 172 + ++L F + K D+ ++AASI+AK+ RD I Y G Sbjct: 122 VSNYKKNLQAHFKFNFTIEAKADATYEVVSAASIVAKINRDAFFSSKTNNIHENYYTKLG 181 Query: 173 FDSHV----------GYPTAKH-QQVIKEK-----GPSCIHRLTFRPLRNL 207 ++ GYP+ H QQ +K+ G + I R ++ +++L Sbjct: 182 YEELTSIKDFNHCGSGYPSDPHTQQWLKDNFHPISGFNSIVRHSWSTIQSL 232 >gi|330508333|ref|YP_004384761.1| ribonuclease HII [Methanosaeta concilii GP-6] gi|328929141|gb|AEB68943.1| ribonuclease HII [Methanosaeta concilii GP-6] Length = 210 Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 70/155 (45%), Gaps = 22/155 (14%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS- 82 G DE G+G + G + VA +++D G+ DSK +S KRE L KIT+ A Sbjct: 5 GADEAGKGPVIGSMFVAGLVIDEERFFDLAVLGVKDSKMLSPAKREALARKITTIATDQY 64 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR----SALIDGRSIPEDLPCQA----- 133 I + ID+ + D + + QV+ R A++D + + QA Sbjct: 65 ILEVRAEVIDELRLVMTMNDIMVRSFS--QVVGRLHADRAILDAADVNAERFAQAVRNHS 122 Query: 134 ------FAVIKGDSISLSIAAASIIAKVTRDRLMR 162 A K D ++AASI+AKV RDR MR Sbjct: 123 KTSMDLIAEHKADQRHHVVSAASILAKVRRDRSMR 157 >gi|89268632|emb|CAJ82403.1| ribonuclease H2, large subunit [Xenopus (Silurana) tropicalis] Length = 301 Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 33/183 (18%) Query: 28 GIDEVGRGALAGPVVVA----AIILDPNNIPFGINDSKKISHKKREELYEKITSSA---- 79 GIDE GRG + GP+V + + + DSK +S +RE L+EK+ S++ Sbjct: 32 GIDEAGRGPVLGPMVYGICYCPVARKKDLQDLKVADSKTLSEAERERLFEKLNSTSDYIG 91 Query: 80 ----IIS--ISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPEDLP 130 I+S I S S Q K+N++ + D ++ + V + +D E Sbjct: 92 WALHILSPNIISTSMQQRAKYNLNALSHDTAIGLIQFALDAGVQLKEVFLDTVGPAEKYQ 151 Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + + K DS+ ++AASI AKV RDR+++ D+ F +G P Sbjct: 152 DKLKKIFPELDVTVRPKADSLFPVVSAASICAKVARDRVVK-------DWKFVEDLGDPD 204 Query: 182 AKH 184 A++ Sbjct: 205 AEY 207 >gi|328872786|gb|EGG21153.1| ribonuclease H2 subunit A [Dictyostelium fasciculatum] Length = 303 Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 87/190 (45%), Gaps = 38/190 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-I 80 + GIDE GRG + GP+V A I NDSKK++ ++RE+L+ KI S + Sbjct: 44 IMGIDEAGRGPVLGPLVYGACFAPLKEIETIKKMKFNDSKKLTEQQREQLFIKIIKSPDV 103 Query: 81 ISISS--ASHQYIDKHNIHK--ATLDAIYHAVENLQVIPRSALIDGRSIPE--------D 128 I S + +Y+ + K +LD I H ++I R+ L G ++ E Sbjct: 104 IGFVSDINTPEYLSEKMCAKMPTSLDVISHG-SAFKMI-RTVLDRGYNVQELYLDTVGPA 161 Query: 129 LPCQ-----AFAVI-------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY----- 171 L Q AF I K DSI ++A SI+AKV RD L IA+ + Y Sbjct: 162 LKYQTKLQIAFPSIGKIVVSSKADSIYPIVSAGSIVAKVLRDVL--IANTSFAAYQGVEI 219 Query: 172 GFDSHVGYPT 181 D GYP+ Sbjct: 220 SRDFGSGYPS 229 >gi|159042290|ref|YP_001541542.1| ribonuclease HII [Caldivirga maquilingensis IC-167] gi|189043570|sp|A8MAH5|RNH2_CALMQ RecName: Full=Ribonuclease HII; Short=RNase HII gi|157921125|gb|ABW02552.1| ribonuclease HII [Caldivirga maquilingensis IC-167] Length = 209 Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 25/172 (14%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSSA-----I 80 AGIDE GRG + GP+V+A + + G+ DSK+++ R LY+ I S A + Sbjct: 9 AGIDEAGRGPVIGPMVIAIVGWSNSEAEGIGVKDSKQLTPSGRSRLYKLIVSKAPCVRHV 68 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I S Y+++ +++ + ++ + R +D P+ P + I Sbjct: 69 IVEPSEIDYYVNRGLLNELEAIKMSELIKACSGVTR-VYVDS---PDPNPSRFRGFINVK 124 Query: 141 SISL-----------SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + L ++AASI+AKV RD ++ + Y D+G GYP+ Sbjct: 125 DVELIVLNHADESIPLVSAASIVAKVIRDTIISRLKETYGDFGS----GYPS 172 >gi|282165631|ref|YP_003358016.1| ribonuclease HII [Methanocella paludicola SANAE] gi|282157945|dbj|BAI63033.1| ribonuclease HII [Methanocella paludicola SANAE] Length = 217 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 22/157 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 +AGIDE GRG + GP+VV + + + G+ DSK ++ KKREE KI Sbjct: 2 IAGIDEAGRGPVIGPMVVCGVSVSEKKLRKIKSMGLKDSKLLTPKKREEFAVKIKDVCEY 61 Query: 82 SISSASHQYIDKH-----NIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--------- 127 + + ID N+++ ++ + ++ L+ P +A +D + Sbjct: 62 ELVVVGPERIDSRANDELNLNELEVECFSNILKALR--PATAYVDACDVNAERFGINVKK 119 Query: 128 --DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162 D + + D ++AASI+AKV RD L++ Sbjct: 120 GLDFEVEVISRHNADRDYPVVSAASILAKVHRDALIK 156 >gi|61557385|ref|NP_001013252.1| ribonuclease H2 subunit A [Rattus norvegicus] gi|81889649|sp|Q5U209|RNH2A_RAT RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|55562777|gb|AAH86345.1| Rnaseh2a protein [Rattus norvegicus] gi|55824706|gb|AAH86539.1| Ribonuclease H2, subunit A [Rattus norvegicus] gi|149037817|gb|EDL92177.1| ribonuclease H2, large subunit, isoform CRA_a [Rattus norvegicus] gi|149037820|gb|EDL92180.1| ribonuclease H2, large subunit, isoform CRA_a [Rattus norvegicus] Length = 301 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 32/185 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA-- 79 V G+DE GRG + GP+V A + + + DSK ++ +RE L+ K+ Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDF 89 Query: 80 ------IISISSASHQYID--KHNIHKATLDA----IYHAV-ENLQVIPRSALIDGRSIP 126 I+S + S + K+N++ + D I HA+ +N++V +D +P Sbjct: 90 VGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVT--QVFVDTVGMP 147 Query: 127 EDLPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 E Q F I K DS+ ++AASIIAKV RD+ ++ G DS Sbjct: 148 ETYQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQFVESLQGLDSDY 207 Query: 178 --GYP 180 GYP Sbjct: 208 GSGYP 212 >gi|55648379|ref|XP_512415.1| PREDICTED: ribonuclease H2 subunit A isoform 2 [Pan troglodytes] Length = 299 Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 85/198 (42%), Gaps = 38/198 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 V G+DE GRG + GP+V A + + + DSK + +RE L+ K+ + + Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLLESERERLFAKMEDTDFV 89 Query: 82 SIS---------SASHQYIDKHNIHKATLD--------AIYHAVENLQVIPRSALIDGRS 124 + S S K+N++ + D A+Y V QV +D Sbjct: 90 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALYQGVNVTQV-----FVDTVG 144 Query: 125 IPEDLPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGF 173 +PE Q+F I K D++ ++AASI AKV RD+ ++ +K D Sbjct: 145 MPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDSDT 204 Query: 174 DSHVGYPT-AKHQQVIKE 190 D GYP K + +KE Sbjct: 205 DYGSGYPNDPKTKAWLKE 222 >gi|125533439|gb|EAY79987.1| hypothetical protein OsI_35154 [Oryza sativa Indica Group] Length = 298 Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 29/183 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG + GP+V + DSK + ++REEL+E + ++ I Sbjct: 16 LMGIDEAGRGPVLGPMVYGCMYCARSYQDTLATLKFADSKTLKEEQREELFESLKDNSSI 75 Query: 82 SIS---------SASHQYIDKHNI----HKATLDAIYHAVENLQVIPRSALIDGRS---- 124 SA K N+ H + + + A+ ++ V+ ID Sbjct: 76 GWEVDVICPKELSAKMLKRSKVNLNEISHNSAMGLVKRAL-DMGVLLAEVYIDTVGDAEK 134 Query: 125 ----IPEDLPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMR--IAHKKYPDYGFDSHV 177 + E P F V K DS+ ++ ASI++KVTRDR +R + + + ++ Sbjct: 135 YRIKLTEKFPGIKFVVAKKADSLFPVVSGASIVSKVTRDRALRNWVFDETAQNMHMNTGS 194 Query: 178 GYP 180 GYP Sbjct: 195 GYP 197 >gi|115484243|ref|NP_001065783.1| Os11g0153900 [Oryza sativa Japonica Group] gi|62701661|gb|AAX92734.1| ribonuclease HII, putative [Oryza sativa Japonica Group] gi|77548724|gb|ABA91521.1| ribonuclease HI large subunit, putative, expressed [Oryza sativa Japonica Group] gi|113644487|dbj|BAF27628.1| Os11g0153900 [Oryza sativa Japonica Group] gi|125576251|gb|EAZ17473.1| hypothetical protein OsJ_33004 [Oryza sativa Japonica Group] Length = 298 Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 29/183 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG + GP+V + DSK + ++REEL+E + ++ I Sbjct: 16 LMGIDEAGRGPVLGPMVYGCMYCARSYQDTLATLKFADSKTLKEEQREELFESLKDNSSI 75 Query: 82 SIS---------SASHQYIDKHNI----HKATLDAIYHAVENLQVIPRSALIDGRS---- 124 SA K N+ H + + + A+ ++ V+ ID Sbjct: 76 GWEVDVICPKELSAKMLKRSKVNLNEISHNSAMGLVKRAL-DMGVLLAEVYIDTVGDAEK 134 Query: 125 ----IPEDLPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMR--IAHKKYPDYGFDSHV 177 + E P F V K DS+ ++ ASI++KVTRDR +R + + + ++ Sbjct: 135 YRIKLTEKFPGIKFVVAKKADSLFPVVSGASIVSKVTRDRALRNWVFDETAQNMHMNTGS 194 Query: 178 GYP 180 GYP Sbjct: 195 GYP 197 >gi|328865315|gb|EGG13701.1| hypothetical protein DFA_11462 [Dictyostelium fasciculatum] Length = 665 Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKIS 64 RP N+ AGIDE G+G++ GP+VVA +++D G+ DSK ++ Sbjct: 237 RPRLTPANKFNNYNINIYAGIDESGKGSVLGPLVVAIVVIDQPTSQLLRATGVKDSKALT 296 Query: 65 HKKREELYEKITSSAI 80 +RE LY IT AI Sbjct: 297 SAQRENLYSIITEKAI 312 >gi|116754092|ref|YP_843210.1| ribonuclease HII [Methanosaeta thermophila PT] gi|121694604|sp|A0B796|RNH2_METTP RecName: Full=Ribonuclease HII; Short=RNase HII gi|116665543|gb|ABK14570.1| RNase HII [Methanosaeta thermophila PT] Length = 211 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 22/160 (13%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS 78 M + G+DE G+G + G + VA ++ +I G+ DSK +S +RE + KI S Sbjct: 1 MMLILGVDEAGKGPVIGSMFVAGVVFSEEDIFDLAACGVKDSKLLSPTRRESMERKILSI 60 Query: 79 AIIS-ISSASHQYIDK----HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 A S + + Q ID ++++ + A V LQ A++D + + Q Sbjct: 61 ARESFVLEVTAQQIDDLRMVMSMNEIMVRAHSRVVSRLQ--ADRAILDAADVNAERFAQR 118 Query: 134 FAVIKGDSISL-----------SIAAASIIAKVTRDRLMR 162 + G I + +AAASIIAKV RDR +R Sbjct: 119 VREVSGKPIDILAEHNADRKHIVVAAASIIAKVARDRSIR 158 >gi|149037818|gb|EDL92178.1| ribonuclease H2, large subunit, isoform CRA_b [Rattus norvegicus] gi|149037821|gb|EDL92181.1| ribonuclease H2, large subunit, isoform CRA_b [Rattus norvegicus] Length = 282 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 32/185 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA-- 79 V G+DE GRG + GP+V A + + + DSK ++ +RE L+ K+ Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDF 89 Query: 80 ------IISISSASHQYID--KHNIHKATLDA----IYHAV-ENLQVIPRSALIDGRSIP 126 I+S + S + K+N++ + D I HA+ +N++V +D +P Sbjct: 90 VGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVT--QVFVDTVGMP 147 Query: 127 EDLPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 E Q F I K DS+ ++AASIIAKV RD+ ++ G DS Sbjct: 148 ETYQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQFVESLQGLDSDY 207 Query: 178 --GYP 180 GYP Sbjct: 208 GSGYP 212 >gi|294464821|gb|ADE77916.1| unknown [Picea sitchensis] Length = 293 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 31/165 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELYEKITSSA 79 + GIDE GRG + GP+V + + + F DSK + +KREEL+E + + A Sbjct: 15 IMGIDEAGRGPVLGPMVYGCLYCSASYQETLATLKFA--DSKTLKEEKREELFESLKADA 72 Query: 80 IIS----------ISSASHQYIDKHNIHKATLDA---IYHAVENLQVIPRSALIDGRS-- 124 + +S+ Q I K N++ + DA + + V + ++ +D Sbjct: 73 SLGWAVDIIDPRELSAKMLQRI-KVNLNTISHDAAMGLVNTVLSKGILLSEVYVDTVGDA 131 Query: 125 ------IPEDLPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMR 162 + E P F V K DS+ ++ ASI+AKVTRD +R Sbjct: 132 DKYRIKLEEKFPGIKFVVSKKADSLYPIVSGASIVAKVTRDNALR 176 >gi|329766419|ref|ZP_08257963.1| Ribonuclease HII [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137018|gb|EGG41310.1| Ribonuclease HII [Candidatus Nitrosoarchaeum limnia SFB1] Length = 62 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 37/53 (69%), Gaps = 4/53 (7%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK 74 + G+D+ GRG++ GP+V+A I L +++ G+ DSK+++ K REELY+K Sbjct: 10 ICGVDDAGRGSMLGPLVIAGISLKKSDVSKLKLLGVKDSKQLTPKLREELYKK 62 >gi|19173027|ref|NP_597578.1| BELONGS TO THE RIBONUCLEASE HII FAMILY [Encephalitozoon cuniculi GB-M1] gi|19168694|emb|CAD26213.1| BELONGS TO THE RIBONUCLEASE HII FAMILY [Encephalitozoon cuniculi GB-M1] Length = 239 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 28/176 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITSSAIISI 83 V GIDE GRG + G +V A+++ P + G DSK ++ +R ++ I Sbjct: 19 VVGIDEAGRGPVVGYMVYGALVV-PRGVLEDVGFKDSKVLTPAQRYNFFQMIKKKGFGYA 77 Query: 84 SSASH-QYIDKH------NIHKATLDAIYHAVENLQ-------VIPRSALIDGRSIPE-- 127 SH YI + ++++ ++ ++ ++ +Q I AL D R E Sbjct: 78 YHCSHPDYITEMMQVRSVSLNEVSIGSVLRILDEVQSKCRRVDTIYVDALGDCRKYKERL 137 Query: 128 --DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 D P + + DS ++ ASI+AKV RD L+ ++G D GYP+ Sbjct: 138 EKDYPYRFVVEERADSKFQVVSGASIVAKVQRDMLI-------SEFGEDLGSGYPS 186 >gi|325189407|emb|CCA23898.1| ribonuclease H2 subunit A putative [Albugo laibachii Nc14] Length = 303 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/194 (28%), Positives = 78/194 (40%), Gaps = 46/194 (23%) Query: 26 VAGIDEVGRGALAGPVVVAA--IILDPNNI--PFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG + GP+V +A +D N G +DSK +S R+ LY+ IT S I Sbjct: 24 IMGIDEAGRGPVLGPMVYSAAYWAIDSNEACEAMGFDDSKVLSAASRKSLYKTITESTEI 83 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED----LPCQAFAVI 137 S +I + D + V NL I R A I I + L C I Sbjct: 84 ----GSISWIARSVSACEISDKMQRKVRNLNEIARDATIQIIEIVQAKRVCLQCVYVDTI 139 Query: 138 ------------------------KGDSISLSIAAASIIAKVTRDRLMR------IAHKK 167 K D + ++AASI+AKV RD ++ + H Sbjct: 140 GDPSWYQNFLTKHFREKITFVVRKKADQLFKIVSAASIVAKVIRDTILEEWKWETLTHTL 199 Query: 168 YPDYGFDSHVGYPT 181 ++G GYP+ Sbjct: 200 PTEFG----SGYPS 209 >gi|295099552|emb|CBK88641.1| Ribonuclease HIII [Eubacterium cylindroides T2-87] Length = 170 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 8/90 (8%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREE 70 E+ KNM+P AG DEVG G GPVVV+A+I+ N I DSK+I+ +K Sbjct: 58 ESSSESKNMFPQAGSDEVGTGDYFGPVVVSAVIVSKENEDVLRNLKIQDSKQINDEKIRV 117 Query: 71 LYEKITS---SAIISISSASHQYIDK-HNI 96 L ++I S I+ +SS+ + + K HN+ Sbjct: 118 LAKEIKSLCPHTILIVSSSKYNSVHKQHNM 147 >gi|152976941|ref|YP_001376458.1| ribonuclease HIII [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025693|gb|ABS23463.1| ribonuclease HIII [Bacillus cytotoxicus NVH 391-98] Length = 338 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 33/202 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 + G DEVG G GP+ V A +D IP G+ DSK ++ + ++L I Sbjct: 123 IIGSDEVGTGDYFGPMTVVAAYVDAKQIPLLKELGVKDSKNLNDAQITAIAKQLLTVIPY 182 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDGRSIPED-- 128 S+++ + ++ DK N ++ L A+ H A+ NL P LID + P+ Sbjct: 183 SSLVLHNEKYNELFDKGN-NQGKLKALLHNKAIINLLAKIAPTKPDGILIDQFTQPDTYY 241 Query: 129 --LPCQ-------AFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 L Q + KG+SI L++AAASI+A+ + D L + A + P G Sbjct: 242 KYLANQKQVQRDNVYFATKGESIHLAVAAASILARYSFVKQFDELSKKAGMQLPK-GAGK 300 Query: 176 HVGYPTAKH-QQVIKEKGPSCI 196 V AK Q++ KE+ P + Sbjct: 301 QVDIAAAKLIQKLGKERLPEFV 322 >gi|308174559|ref|YP_003921264.1| ribonuclease HIII [Bacillus amyloliquefaciens DSM 7] gi|307607423|emb|CBI43794.1| ribonuclease HIII [Bacillus amyloliquefaciens DSM 7] gi|328554482|gb|AEB24974.1| ribonuclease HIII [Bacillus amyloliquefaciens TA208] gi|328912886|gb|AEB64482.1| ribonuclease HIII [Bacillus amyloliquefaciens LL3] Length = 313 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 90/206 (43%), Gaps = 38/206 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS--- 78 V G DEVG G GP+ VA D + G+ DSK + + E+ + + + Sbjct: 96 VIGSDEVGTGDYFGPITVACAYADKTKLSLMKELGVKDSKDLKDPQIIEIAKLLIKTIPY 155 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALID---------- 121 +++ + + + + + + + + A+ H A+ NL V P + LID Sbjct: 156 SLLVLKNEKYNQMQEKGMSQGKMKALLHNQAISNLLKKMNGVKPEAILIDQFAEPGIYFK 215 Query: 122 ---GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK----VTRDRLMRIAHKKYPDYGFD 174 GR I ++ + F K +SI LS+AAASIIA+ + D+L R A P G Sbjct: 216 HLSGRDIVKE---KTFFSTKAESIHLSVAAASIIARYSFLLEMDKLSREAGMTIPK-GAG 271 Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLT 200 HV AK +I KG + T Sbjct: 272 PHVDEAAAK---LIINKGEDALRTFT 294 >gi|297527144|ref|YP_003669168.1| ribonuclease HII [Staphylothermus hellenicus DSM 12710] gi|297256060|gb|ADI32269.1| ribonuclease HII [Staphylothermus hellenicus DSM 12710] Length = 244 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 91/208 (43%), Gaps = 37/208 (17%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKIT----SSA 79 G+DE GRG L G +V+A +I+ N I G+ DSK+++ R L +KI S+ Sbjct: 11 GVDEAGRGPLIGDLVIAILIISRNKIEKLISIGVKDSKQLTRHTRLSLAKKILKLADSAL 70 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI-- 137 II IS + ID +NI++ + I A++ + I E + + + Sbjct: 71 IIYISP---EIIDSYNINRIIAEKIILALKLFSPVINHYRTASIYIDEIKGYKNYILANL 127 Query: 138 --------------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 D ++AASI+AK RD+ + K Y + G GYP+ + Sbjct: 128 SKYINNIEEYVMEPNADQKYPVVSAASILAKTIRDKNIDFLKKIYGNLG----SGYPSDR 183 Query: 184 H--QQVIK----EKGPSCIHRLTFRPLR 205 +IK EK P I R T+ LR Sbjct: 184 VTINWLIKTYNGEKEPPLIIRRTWSTLR 211 >gi|324509653|gb|ADY44053.1| Ribonuclease H2 subunit A [Ascaris suum] Length = 298 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 84/191 (43%), Gaps = 40/191 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAII--LDPNNI--PFGINDSKKISHKKREELYE-------- 73 V GIDE GRG + GP+V A I LD G++DSK ++ +KR +++E Sbjct: 30 VLGIDEAGRGPVLGPMVYACAISPLDAAEQLKELGVDDSKALTEEKRTQIFENMNNEENT 89 Query: 74 --------KITSSAIISISSASH-QYIDKHNIHKATLDAIYHAVENL---------QVIP 115 ++ S+ +IS +Y H + ++ I A+EN V P Sbjct: 90 TKVVAYAYRVLSARLISAEMLRRCKYSLNELSHTSAINLIKFALENGINVTEIYVDTVGP 149 Query: 116 RSALIDGRSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRI-----AHKKYP 169 +S + P + V K DS+ + AASI AKVTRD ++R P Sbjct: 150 KSTY--QAKLQAHFPNISITVTEKADSLFPVVGAASIAAKVTRDGVLRDWVFVEGDVTVP 207 Query: 170 DYGFDSHVGYP 180 + G+ S GYP Sbjct: 208 EGGYGS--GYP 216 >gi|82706071|ref|XP_727229.1| ribonuclease HII [Plasmodium yoelii yoelii str. 17XNL] gi|23482972|gb|EAA18794.1| ribonuclease HII, putative [Plasmodium yoelii yoelii] Length = 307 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 40/187 (21%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI--- 80 GIDE GRG + GP+V + + I+DSKKI+ RE+++ K+ +S + Sbjct: 20 GIDEAGRGPVLGPMVYSGFYCKKEDEKLLKEMKIDDSKKITEHDREKMFYKLNNSKLPFA 79 Query: 81 --ISIS-----SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA--------LIDGRSI 125 + I SA +K+N+++ + D ++ V+ R + S+ Sbjct: 80 WRVHILMPQDISAKMLKKEKYNLNEISHDTAISIIQ--HVLSRGCNLTEVFVDTVGKASV 137 Query: 126 PEDLPCQAFAVIK------GDSISLSIAAASIIAKVTRDRLMRIAHKKYP------DYGF 173 E+ + F IK DS+ ++AASI AKVTRD L I KY D GF Sbjct: 138 YEEKLQKLFPNIKCVVKEKADSLYPVVSAASICAKVTRDFL--IKKWKYEEQIINIDKGF 195 Query: 174 DSHVGYP 180 S GYP Sbjct: 196 GS--GYP 200 >gi|253748461|gb|EET02569.1| Ribonuclease HI, large sub [Giardia intestinalis ATCC 50581] Length = 243 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 98/233 (42%), Gaps = 59/233 (25%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKREELYEKI--- 75 + GIDE GRG + GP+V I P + G+NDSK +S RE +YE++ Sbjct: 2 IVGIDEAGRGPVCGPLVY-GIAWMPAKVYQTGILEKLGVNDSKALSADTREYIYEQLHAL 60 Query: 76 ------TSSAIISISSASHQYI--DKHNIHKATLDA----IYHAVENLQ--------VIP 115 ++A+IS S + K +++ + +A +Y + + V P Sbjct: 61 PKDDFGCNTAVISADQISRAMLAPRKTSLNLLSFEAARSLLYQVFTSYEIEHVYIDLVSP 120 Query: 116 RSALIDGRSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAH--------- 165 S I E +P A + K D AASI+AKVTRDR ++ Sbjct: 121 ESQY--AAYIRELMPNLALTICAKADGKYPITGAASIVAKVTRDRHIKAQWGSGYPSDPK 178 Query: 166 -KKYPD------YGFDSHV--GYPTAKHQQVIKEKGPSCIHRLTF---RPLRN 206 K+Y D YGF +H+ + T K I + CI + TF PL N Sbjct: 179 TKEYLDKACHSIYGFPAHIRHSWETVKR---IYDTPSKCI-KCTFIADTPLEN 227 >gi|325294626|ref|YP_004281140.1| ribonuclease HIII [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065074|gb|ADY73081.1| ribonuclease HIII [Desulfurobacterium thermolithotrophum DSM 11699] Length = 270 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 17/151 (11%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA---- 79 G DE G+G GP+VVA + D N + G+ DSK +S +K ++ E+I Sbjct: 76 GCDEAGKGEFVGPLVVACVCADKNCLRKLLDLGVKDSKALSREKILKMAEEIKKYCRGRV 135 Query: 80 -IISISSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRS------IPEDLP 130 +I + Y N+++ D + +L + P+ ++D S + E Sbjct: 136 KVIMPFQYNKLYEKYKNLNRLLEDIYVELIGSLLAKYSPQEVIVDKFSSRIEPLLKEKFK 195 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLM 161 +F V+ L +AAASI+AK R + M Sbjct: 196 NTSFKVVPKAEKDLVVAAASIVAKAERLKAM 226 >gi|45361019|ref|NP_989146.1| ribonuclease H2, subunit A [Xenopus (Silurana) tropicalis] gi|38494390|gb|AAH61614.1| ribonuclease H2, large subunit [Xenopus (Silurana) tropicalis] Length = 301 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 33/183 (18%) Query: 28 GIDEVGRGALAGPVVVA----AIILDPNNIPFGINDSKKISHKKREELYEKITSSA---- 79 GIDE GRG + GP+V + + + DSK +S +RE L+EK+ S++ Sbjct: 32 GIDEAGRGPVLGPMVYGICYCPVARKKDLQDLKVADSKTLSEAERERLFEKLNSTSDYIG 91 Query: 80 ----IIS--ISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPEDLP 130 I+S I S S Q K+N++ + D ++ + V + +D E Sbjct: 92 WALHILSPNIISTSMQQRAKYNLNALSHDTAIGLIQFALDAGVQLKEVFLDTVGPAEKYQ 151 Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + + K DS+ ++AASI AKV RDR+++ ++ F +G P Sbjct: 152 DKLKKIFPELDVTVRPKADSLFPVVSAASICAKVARDRVVK-------EWKFVEDLGDPD 204 Query: 182 AKH 184 A++ Sbjct: 205 AEY 207 >gi|303243761|ref|ZP_07330102.1| ribonuclease HII [Methanothermococcus okinawensis IH1] gi|302486003|gb|EFL48926.1| ribonuclease HII [Methanothermococcus okinawensis IH1] Length = 305 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 8/79 (10%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS----A 79 G+DE GRG + GP+V+A + ++P G+ DSKK+S KREELY+ I ++ + Sbjct: 42 GLDEAGRGPVLGPMVIALVKATEKDLPKFDELGLKDSKKLSRHKREELYKIIMNNYEVKS 101 Query: 80 IISISSASHQYIDKHNIHK 98 II + + ++K N++K Sbjct: 102 IILEAKDIDKMMEKTNLNK 120 >gi|307198751|gb|EFN79554.1| Ribonuclease H2 subunit A [Harpegnathos saltator] Length = 337 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 74/183 (40%), Gaps = 30/183 (16%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELYEKIT------ 76 G+DE GRG + GP+V I P + + G DSK ++ KKR+E+++ I Sbjct: 66 GVDEAGRGPVLGPMVYG-ISYAPLSRKQLLVELGCADSKSLTEKKRDEIFDGICEHKDCI 124 Query: 77 -------SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 S +I+ S + + + + A V +D PE Sbjct: 125 GWAVEAISPNVIANSMYRRTKVSLNETSMVSATELIKAAIEAGVNVAEVYVDTVGKPETY 184 Query: 130 PCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV--G 178 + AV K DS ++AASI AKV+RD +R + D F S G Sbjct: 185 QARLKAVFPGVKVVVAKKADSTYPIVSAASICAKVSRDHAIRAWRFREVDVAFPSEYGSG 244 Query: 179 YPT 181 YPT Sbjct: 245 YPT 247 >gi|284164032|ref|YP_003402311.1| ribonuclease HII [Haloterrigena turkmenica DSM 5511] gi|284013687|gb|ADB59638.1| ribonuclease HII [Haloterrigena turkmenica DSM 5511] Length = 228 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 77/184 (41%), Gaps = 35/184 (19%) Query: 28 GIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 G+DE G+G G + AA+ DP +P GI DSK++S ++REEL I I + A Sbjct: 4 GVDEAGKGPALGSMFAAAVHCEDPTALPDGIADSKRLSPERREELAAAIREDDGIRVGVA 63 Query: 87 --SHQYIDKHNIHKATLDAIYHA--------VENLQVIPRSALIDG---------RSIPE 127 + ID +L HA + L+ P + L D R + + Sbjct: 64 EITPARIDDPETDMNSLAVAAHAEAIDGALEADALETAPITGLCDACDTDAERFARRVTD 123 Query: 128 ---DLPCQAFAVIK--------GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 DL A + ++ D S + AAS++AKV RD + +Y G Sbjct: 124 ACTDLFADASSALEINIEARHGADDESPIVGAASVVAKVERDAHVAALADEYGPVG---- 179 Query: 177 VGYP 180 GYP Sbjct: 180 SGYP 183 >gi|229140480|ref|ZP_04269035.1| Ribonuclease HII [Bacillus cereus BDRD-ST26] gi|228643041|gb|EEK99317.1| Ribonuclease HII [Bacillus cereus BDRD-ST26] Length = 106 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/44 (52%), Positives = 31/44 (70%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN 58 E +REK + +AGIDEVGRG LAGPVV AA++L + + G+ Sbjct: 63 ENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPKDFLYSGVK 106 >gi|221132373|ref|XP_002166509.1| PREDICTED: similar to ribonuclease H2, large subunit [Hydra magnipapillata] Length = 300 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 88/197 (44%), Gaps = 41/197 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA---- 79 GIDE GRG + GP+V + + I G DSK ++ +KR+ L I ++ Sbjct: 32 GIDEAGRGPVLGPMVYSVCYCPISMIKKLSDLGFADSKTLTEEKRDNLLSVIENNCDFIG 91 Query: 80 ----IISISSASHQYIDKHNIHKATLDAIYH--AVENLQVIPRSALIDGRSIPE---DLP 130 IIS + S++ + ++ K TL+ I H A+E + R + G +I E D Sbjct: 92 WAIKIISPTEISNEMLRRY---KVTLNEISHGAAIE----LTRKTINAGANITEMYVDTV 144 Query: 131 CQAF-------AVIKGDSISLS---------IAAASIIAKVTRDRLMRIAHKKYPDYGFD 174 A V G S+ ++ ++AASI AKV RDR ++ D D Sbjct: 145 GDALKYQNKLSEVFDGISVKVTPKADALFPIVSAASICAKVARDRCIQNWQFPEGDIKED 204 Query: 175 SHVGYPT-AKHQQVIKE 190 GYP K +Q +K+ Sbjct: 205 YGSGYPADPKTKQWLKD 221 >gi|290991286|ref|XP_002678266.1| predicted protein [Naegleria gruberi] gi|284091878|gb|EFC45522.1| predicted protein [Naegleria gruberi] Length = 245 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 86/196 (43%), Gaps = 37/196 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAII----LDPNNI---PFGINDSKKISHKKREELYEKITSS 78 V GIDE GRG + GP+V A + + +N F +NDSKK++ K RE++++ + + Sbjct: 14 VMGIDEAGRGPVLGPLVYACMFCKSKYNTDNFLKKTFHVNDSKKLTAKMREKIFKTLKEN 73 Query: 79 A--------IISISSASHQYID--KHNI----HKATLDAIYHAVENLQ---VIPRSALID 121 + I+ SH+ + K+N+ H + I A E L + ID Sbjct: 74 SKIVHYITCIVQSDEISHKMLSRKKYNLNLISHDCAIHLIKTASETLSKKGKYLKEVYID 133 Query: 122 GRSIP--------EDLPCQAFAVI--KGDSISLSIAAASIIAKVTRDRLM-RIAHKKYPD 170 P E P V+ K DS + ASI+AKV RD ++ I KY Sbjct: 134 TVGDPKKYQAKLQEKFPEIESIVVDKKADSKYPVVGGASIVAKVKRDEIVEEIQSLKYSK 193 Query: 171 YGFDSHVGYPTAKHQQ 186 S GY + K+ + Sbjct: 194 LKMGS--GYTSDKYTK 207 >gi|217964706|ref|YP_002350384.1| ribonuclease hiii [Listeria monocytogenes HCC23] gi|217333976|gb|ACK39770.1| ribonuclease hiii [Listeria monocytogenes HCC23] gi|307570733|emb|CAR83912.1| rnhC [Listeria monocytogenes L99] Length = 293 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 33/158 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78 V G DEVG G GP+ V A +D IP G+ DSK + + + EKI Sbjct: 78 VIGSDEVGTGDFFGPITVCAAYVDAEMIPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124 +++ + + + K +++ + A+ H A+EN+ + P + LID + Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLTPIKPEAILIDQFAEKNTYYR 197 Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 I ED+ F K + + LS+AAASIIA+ Sbjct: 198 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 231 >gi|183232283|ref|XP_655093.2| RNase HI large subunit [Entamoeba histolytica HM-1:IMSS] gi|169802113|gb|EAL49706.2| RNase HI large subunit, putative [Entamoeba histolytica HM-1:IMSS] Length = 270 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 29/162 (17%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITSSAIISISS 85 GIDE GRG + GP+V +A + G +DSK +S RE+L+ I S + S+ Sbjct: 18 GIDEAGRGPVLGPMVYSAFFTTNTEVISTMGFHDSKILSRTMREKLFTDIKESGVCGFST 77 Query: 86 --ASHQYIDKHNI--HKATLDAI-YHAVENL--QVIPRS-------------------AL 119 + YI + K +L+ I + AV ++ Q+I S A+ Sbjct: 78 RILTPSYISQMMCGPQKVSLNEIAFSAVRDIIHQIIRTSQRKIVHIYCDTVGPSKKYQAM 137 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM 161 I E Q K D + ++AASI AKVTRD + Sbjct: 138 I-ANEFKEVKLSQITVCPKADGLYPVVSAASICAKVTRDTCL 178 >gi|170049569|ref|XP_001857534.1| ribonuclease H2 subunit A [Culex quinquefasciatus] gi|167871354|gb|EDS34737.1| ribonuclease H2 subunit A [Culex quinquefasciatus] Length = 334 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 36/188 (19%) Query: 26 VAGIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSSAII 81 V G+DE GRG + GP+V +A +D ++ G DSK+++ +KRE +++++ Sbjct: 60 VLGVDEAGRGPVLGPMVYGIAFSPIDKKDVLKKLGFADSKQLTEEKREHIFDEMNKQDFA 119 Query: 82 SIS-------------SASHQYIDKHNIHKATLDA----IYHAVENLQVIPRSALIDGRS 124 + S S S K ++++ ++D+ I+ A+E I +D Sbjct: 120 TESIGWAVEVISPNDISMSMLRRSKRSLNEVSMDSAIGLIHKAIEAGVNIAE-VYVDTVG 178 Query: 125 IPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY---PDYG 172 PE + + K DS L ++AASI AKV+RD +++ + P+ Sbjct: 179 PPEKYQAKLKLIFPNFKITVAKKADSTYLIVSAASICAKVSRDHALKVWKFREGTDPEVK 238 Query: 173 FDSHVGYP 180 F S GYP Sbjct: 239 FGS--GYP 244 >gi|313609179|gb|EFR84856.1| ribonuclease hiii [Listeria monocytogenes FSL F2-208] Length = 293 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 33/158 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 78 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124 +++ + + + K +++ + A+ H A+EN+ V P + LID + Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 197 Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 I ED+ F K + + LS+AAASIIA+ Sbjct: 198 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 231 >gi|254576869|ref|XP_002494421.1| ZYRO0A01100p [Zygosaccharomyces rouxii] gi|238937310|emb|CAR25488.1| ZYRO0A01100p [Zygosaccharomyces rouxii] Length = 309 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 55/196 (28%), Positives = 82/196 (41%), Gaps = 44/196 (22%) Query: 26 VAGIDEVGRGALAGPVVVAAI---------ILDPNNIPFGINDSKKISHKKREELYEKI- 75 + G+DE GRG + GP+V IL PN +G +DSKK+S +R L+ KI Sbjct: 43 ILGVDEAGRGPVLGPMVYGISYCTKQFQDEILKPN---YGFDDSKKLSDLERRRLFSKIY 99 Query: 76 -TSSAIISISSASHQY--IDKHNIHKATLDAIYHAVENLQVIPRS---ALIDG------- 122 + + I++ + I +I L +A NL ALI+G Sbjct: 100 GENGEVAEIANVGYAVTAITPADISSGMLRYPANANYNLNEQAHDVTIALIEGVLQRGVK 159 Query: 123 ----------------RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLM-RIA 164 + + + P F V K DS+ ++ ASI+AKVTRD L+ + A Sbjct: 160 LHHVYVDTVGPPASYQKKLEQKFPHIKFTVAKKADSLYCVVSVASIVAKVTRDILLEQWA 219 Query: 165 HKKYPDYGFDSHVGYP 180 + P GYP Sbjct: 220 QQVSPPEAGPLGSGYP 235 >gi|73917846|sp|Q720K1|RNH3_LISMF RecName: Full=Ribonuclease HIII; Short=RNase HIII Length = 308 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 33/158 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 93 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 152 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124 +++ + + + K +++ + A+ H A+EN+ V P + LID + Sbjct: 153 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 212 Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 I ED+ F K + + LS+AAASIIA+ Sbjct: 213 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 246 >gi|16079914|ref|NP_390740.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. 168] gi|221310803|ref|ZP_03592650.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. 168] gi|221315128|ref|ZP_03596933.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320046|ref|ZP_03601340.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. JH642] gi|221324328|ref|ZP_03605622.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. SMY] gi|7227926|sp|P94541|RNH3_BACSU RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|1770032|emb|CAA99565.1| hypothetical protein [Bacillus subtilis] gi|2635327|emb|CAB14822.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. 168] Length = 313 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 91/206 (44%), Gaps = 38/206 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS--- 78 V G DEVG G GP+ V +D +P G+ DSK + + E+ + + Sbjct: 96 VIGSDEVGTGDYFGPMTVVCAYVDKTMLPLMKELGVKDSKDLKDPQIIEIARNLIKTIPY 155 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALID---------- 121 +++ + + + + + + + + A+ H A+ +L V P + LID Sbjct: 156 SLLVLKNEKYNSMQEKGMSQGKMKALLHNQAITHLLRKLDGVKPEAILIDQFAEPGVYFN 215 Query: 122 ---GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174 GR I ++ + + K + I L++AAASIIA+ + D+L R A P G Sbjct: 216 HLKGRDIVKE---RTYFSTKAEGIHLAVAAASIIARYSFLMEMDKLSRAAGMTLPK-GAG 271 Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLT 200 HV AK +I +KG S + T Sbjct: 272 PHVDEAAAK---LILKKGASALRTFT 294 >gi|46907447|ref|YP_013836.1| ribonuclease HIII [Listeria monocytogenes serotype 4b str. F2365] gi|46880715|gb|AAT04013.1| putative ribonuclease HIII [Listeria monocytogenes serotype 4b str. F2365] Length = 293 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 33/158 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 78 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124 +++ + + + K +++ + A+ H A+EN+ V P + LID + Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 197 Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 I ED+ F K + + LS+AAASIIA+ Sbjct: 198 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 231 >gi|47458958|ref|YP_015820.1| ribonuclease HII [Mycoplasma mobile 163K] gi|47458286|gb|AAT27609.1| ribonuclease HII [Mycoplasma mobile 163K] Length = 227 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 29/162 (17%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREEL---YEK 74 N + G DE G G P+V A+ L+P NI I DSK ++ KK +E+ +K Sbjct: 4 NEYVTIGSDETGVGDYLSPIVACAVFLNPENISKINKLDIKDSKLLTDKKIKEIAKELKK 63 Query: 75 ITSSAIISISSASHQYIDK----HNI----HKATLDAIYHAVENLQVIPRSALIDGRSIP 126 + S +I S + ++K H I H +++ + +N+ + A D ++I Sbjct: 64 LVSHSINYFSQKGYNNLNKFFNAHEIKMFLHLKSINFLEQKHQNIDYVIIDAFSDEKNID 123 Query: 127 --------------EDLPCQAFAVIKGDSISLSIAAASIIAK 154 +++ + + K +S+SLS+A ASI+A+ Sbjct: 124 KYIEKLVNNKKFMLQNIKSEKKIIQKAESLSLSVACASILAR 165 >gi|254823518|ref|ZP_05228519.1| ribonuclease HIII [Listeria monocytogenes FSL J1-194] gi|254852903|ref|ZP_05242251.1| ribonuclease HIII [Listeria monocytogenes FSL R2-503] gi|254932894|ref|ZP_05266253.1| ribonuclease HIII [Listeria monocytogenes HPB2262] gi|254992865|ref|ZP_05275055.1| ribonuclease HIII [Listeria monocytogenes FSL J2-064] gi|300764377|ref|ZP_07074371.1| ribonuclease HIII [Listeria monocytogenes FSL N1-017] gi|258606238|gb|EEW18846.1| ribonuclease HIII [Listeria monocytogenes FSL R2-503] gi|293584448|gb|EFF96480.1| ribonuclease HIII [Listeria monocytogenes HPB2262] gi|293592738|gb|EFG00499.1| ribonuclease HIII [Listeria monocytogenes FSL J1-194] gi|300515029|gb|EFK42082.1| ribonuclease HIII [Listeria monocytogenes FSL N1-017] gi|328466622|gb|EGF37757.1| ribonuclease HIII [Listeria monocytogenes 1816] gi|332311613|gb|EGJ24708.1| Ribonuclease HIII [Listeria monocytogenes str. Scott A] Length = 293 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 33/158 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 78 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124 +++ + + + K +++ + A+ H A+EN+ V P + LID + Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 197 Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 I ED+ F K + + LS+AAASIIA+ Sbjct: 198 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 231 >gi|226223828|ref|YP_002757935.1| ribonuclease HIII [Listeria monocytogenes Clip81459] gi|259494076|sp|C1L2D3|RNH3_LISMC RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|225876290|emb|CAS04999.1| Putative ribonuclease HIII [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 308 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 33/158 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 93 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 152 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124 +++ + + + K +++ + A+ H A+EN+ V P + LID + Sbjct: 153 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 212 Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 I ED+ F K + + LS+AAASIIA+ Sbjct: 213 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 246 >gi|255521227|ref|ZP_05388464.1| ribonuclease HIII [Listeria monocytogenes FSL J1-175] Length = 260 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 33/158 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 78 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124 +++ + + + K +++ + A+ H A+EN+ V P + LID + Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 197 Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 I ED+ F K + + LS+AAASIIA+ Sbjct: 198 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 231 >gi|289808317|ref|ZP_06538946.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 50 Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 24/38 (63%), Positives = 28/38 (73%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 VAG+DEVGRG L G VV AA+ILDP G+ND +KI Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDYQKI 49 >gi|290893289|ref|ZP_06556275.1| rnhC protein [Listeria monocytogenes FSL J2-071] gi|290557097|gb|EFD90625.1| rnhC protein [Listeria monocytogenes FSL J2-071] Length = 293 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 33/158 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 78 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124 +++ + + + K +++ + A+ H A+EN+ V P + LID + Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 197 Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 I ED+ F K + + LS+AAASIIA+ Sbjct: 198 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 231 >gi|34329831|gb|AAQ64005.1| ribonuclease H2 [Homo sapiens] Length = 299 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 32/195 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 V G+DE GRG + GP+V A + + DSK + +RE L+ K+ + + Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFV 89 Query: 82 S----------ISSASHQYIDKHNI----HKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 IS++ ++ K+N+ H I +A++ V +D +PE Sbjct: 90 GWALDVLSPNLISTSMLGWV-KYNLNSLSHDTATGLIQYALDQ-GVNVTQVFVDTVGMPE 147 Query: 128 DLPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSH 176 Q+F I K D++ ++AASI AKV RD+ ++ +K D D Sbjct: 148 TYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYG 207 Query: 177 VGYPT-AKHQQVIKE 190 GYP K + +KE Sbjct: 208 SGYPNDPKTKAWLKE 222 >gi|19114596|ref|NP_593684.1| ribonuclease H2 complex subunit Rnh201 (predicted) [Schizosaccharomyces pombe 972h-] gi|1723422|sp|Q10236|RNH2A_SCHPO RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|1204203|emb|CAA93552.1| ribonuclease H2 complex subunit Rnh201 (predicted) [Schizosaccharomyces pombe] Length = 326 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 29/168 (17%) Query: 28 GIDEVGRGALAGPVV--VAAIILDPNNIPFGINDSKKISHKKREELYEKITSS------- 78 G+DE GRG + GP+V VA +D + +G DSK ++ KREEL + I + Sbjct: 67 GVDEAGRGPVLGPMVYAVAYCPVDFDLTNYGFADSKTLASLKREELLKLICNKSNELGKN 126 Query: 79 ---AIISIS-----SASHQYIDKHNI----HKATLDAI---YHAVENLQVIPRSALIDGR 123 + +SIS + +Y +K+N+ H T+D I Y + N+ I + Sbjct: 127 VGWSTMSISARELAAGMLRYRNKYNLNLQAHDTTIDLIKKVYESGINVTEIYVDTVGPPI 186 Query: 124 SIPEDLPC---QAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHK 166 S E L QA + K DS+ ++ ASI AKVTRD + A + Sbjct: 187 SYQEKLQAHFPQAKVTVTKKADSLFPIVSLASICAKVTRDIQLECARE 234 >gi|221122753|ref|XP_002163480.1| PREDICTED: similar to ribonuclease H2, large subunit [Hydra magnipapillata] Length = 339 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 88/197 (44%), Gaps = 41/197 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA---- 79 GIDE GRG + GP+V + + I G DSK ++ +KR+ L I ++ Sbjct: 32 GIDEAGRGPVLGPMVYSVCYCPISMIKKLSDLGFADSKTLTEEKRDNLLSVIENNCDFIG 91 Query: 80 ----IISISSASHQYIDKHNIHKATLDAIYH--AVENLQVIPRSALIDGRSIPE------ 127 IIS + S++ + + +K TL+ I H A+E + R + G +I E Sbjct: 92 WAIKIISPTEISNEMLRR---YKVTLNEISHGAAIE----LTRKTINAGANITEMYVDTV 144 Query: 128 -------DLPCQAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174 + + F + K D++ ++AASI AKV RDR ++ D D Sbjct: 145 GDASKYQNKLSEVFDGVSVKVTPKADALFPIVSAASICAKVARDRCIQGWQFPEGDIKED 204 Query: 175 SHVGYPT-AKHQQVIKE 190 GYP K +Q +K+ Sbjct: 205 YGSGYPADPKTKQWLKD 221 >gi|193709059|ref|XP_001946925.1| PREDICTED: ribonuclease H2 subunit A-like [Acyrthosiphon pisum] Length = 312 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 94/210 (44%), Gaps = 39/210 (18%) Query: 4 NSIPERPHFEL-EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGIN 58 NS R +L E+ EK + GIDE GRG + GP+V +N G Sbjct: 23 NSFDVRIESDLPESTTTEK---CILGIDEAGRGPVLGPMVYGTSYCSVDNQAILKTLGCA 79 Query: 59 DSKKISHKKREELYEKITSSA--------IISISSASHQYIDKHNIHKATLDAIYH--AV 108 DSK +S + R+++++ IT + IIS ++ S+ + K +L+ I H A+ Sbjct: 80 DSKVLSEQARDDIFDGITKQSEILGWAVHIISPTTISNCSFRRQ---KCSLNEISHNAAI 136 Query: 109 ENLQ-VIPRSA-----LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIA 153 +Q V+ R +D PE + ++ K DS+ ++AASI A Sbjct: 137 GLIQRVLDRGVNICEVFVDTVGPPEKYQEKLLSIFPQLKITVSKKADSLFPIVSAASICA 196 Query: 154 KVTRDRLMR-IAHKKYPDYGFDSHV--GYP 180 KVTRD ++ + P DS+ GYP Sbjct: 197 KVTRDAALKNWKFIERPGEDIDSNWGSGYP 226 >gi|167394469|ref|XP_001740978.1| ribonuclease H2 subunit A [Entamoeba dispar SAW760] gi|165894666|gb|EDR22579.1| ribonuclease H2 subunit A, putative [Entamoeba dispar SAW760] Length = 270 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 72/163 (44%), Gaps = 31/163 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITSSAIISISS 85 GIDE GRG + GP+V +A I G +DSK +S RE+L+ I SA+ S+ Sbjct: 18 GIDEAGRGPVLGPMVYSAFFTTNTEIISTMGFHDSKILSRTMREKLFSDIKESAVCGFST 77 Query: 86 --ASHQYIDKHNI--HKATLDAI-YHAVENLQVIPRSALIDGRSIP-------------- 126 + YI K +L+ I + AV + +I + I+ R I Sbjct: 78 RILTPSYISHLMCGPQKVSLNEIAFGAVRD--IIHQIIRINQRKIVHIYCDTVGPSGKYQ 135 Query: 127 -------EDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLM 161 +D+ V K D + ++AASI AKVTRD + Sbjct: 136 MMIANEFKDIKLNQITVCPKADGLYPVVSAASICAKVTRDTCL 178 >gi|321469942|gb|EFX80920.1| hypothetical protein DAPPUDRAFT_230884 [Daphnia pulex] Length = 307 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 28/161 (17%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELYEKITS----- 77 GIDE GRG + GP+V I P + G DSK ++ ++RE+L+ K+ S Sbjct: 34 GIDEAGRGPVLGPMVYG-ITYCPESRAEELKAIGCADSKTLTEEQREKLFGKLDSLQDFV 92 Query: 78 ---SAIISISSASHQYID--KHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPEDL 129 +IS +S + KH++++ + D+ + +L+ S +D PE Sbjct: 93 GWAVEVISPNSICNNMFKRLKHSLNEVSHDSAIGLIRKALSLEANITSVFVDTVGPPEKY 152 Query: 130 PCQAFAVIKGDSISLS---------IAAASIIAKVTRDRLM 161 + A+ G I++S ++AASI AKV RD+ + Sbjct: 153 QAKLSALFPGIKITVSKKADSLFPVVSAASICAKVARDKAL 193 >gi|16803268|ref|NP_464753.1| ribonuclease HIII [Listeria monocytogenes EGD-e] gi|20978687|sp|Q8Y7P5|RNH3_LISMO RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|16410644|emb|CAC99306.1| rnhC [Listeria monocytogenes EGD-e] Length = 308 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 33/158 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 93 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 152 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124 +++ + + + K +++ + A+ H A+EN+ + P + LID + Sbjct: 153 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTYYR 212 Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 I ED+ F K + + LS+AAASIIA+ Sbjct: 213 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 246 >gi|291485294|dbj|BAI86369.1| ribonuclease HIII [Bacillus subtilis subsp. natto BEST195] Length = 312 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 91/206 (44%), Gaps = 38/206 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS--- 78 V G DEVG G GP+ V +D +P G+ DSK + + E+ + + Sbjct: 95 VIGSDEVGTGDYFGPMTVVCAYVDKTMLPLMKELGVKDSKDLKDPQIIEIARNLIKTIPY 154 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALID---------- 121 +++ + + + + + + + + A+ H A+ +L V P + LID Sbjct: 155 SLLVLKNEKYNSMQEKGMSQGKMKALLHNQAITHLLRKLDGVKPEAILIDQFAEPGVYFN 214 Query: 122 ---GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174 GR I ++ + + K + I L++AAASIIA+ + D+L R A P G Sbjct: 215 HLKGRDIVKE---RTYFSTKAEGIHLAVAAASIIARYSFLMEMDKLSREAGMTLPK-GAG 270 Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLT 200 HV AK +I +KG S + T Sbjct: 271 PHVDEAAAK---LILKKGASALRTFT 293 >gi|73986851|ref|XP_542041.2| PREDICTED: similar to Ribonuclease HI large subunit (RNase HI large subunit) (RNase H(35)) (Ribonuclease H2) (RNase H2) [Canis familiaris] Length = 299 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 28/183 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK------- 74 V G+DE GRG + GP+V A + + + DSK +S +R+ L+ K Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLGDLEALKVADSKTLSESERDRLFVKMEKDRDF 89 Query: 75 ------ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + S +IS S + +++ T + + V +D +PE Sbjct: 90 VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGLPET 149 Query: 129 LP---CQAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177 Q F I K D++ ++AASI AKV RD+ ++ H +K D D Sbjct: 150 YQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKSWHFVEKLQDLDADYGS 209 Query: 178 GYP 180 GYP Sbjct: 210 GYP 212 >gi|224499100|ref|ZP_03667449.1| ribonuclease HIII [Listeria monocytogenes Finland 1988] Length = 293 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 33/158 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 78 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124 +++ + + + K +++ + A+ H A+EN+ + P + LID + Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTYYR 197 Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 I ED+ F K + + LS+AAASIIA+ Sbjct: 198 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 231 >gi|297618794|ref|YP_003706899.1| ribonuclease HII [Methanococcus voltae A3] gi|297377771|gb|ADI35926.1| ribonuclease HII [Methanococcus voltae A3] Length = 264 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 87/190 (45%), Gaps = 34/190 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN-------IPFGINDSKKISHKKREELYEKITSS 78 V G+DE GRG + GP+V+A ++L +N + DSKK+S KKRE LY++I Sbjct: 19 VVGLDEAGRGPVIGPMVIAGVLLKMDNKENAKTFYDLDLKDSKKLSKKKRETLYKEIQKL 78 Query: 79 AIISISSASHQYIDKH----NIHKATLDA-----------IYHAVENLQVIPRSALIDGR 123 A + + + ID N++K L+ IY EN + ID Sbjct: 79 AKVEKVIITAKEIDAQMNIINLNKIELNGFSSIINKFYKDIYGLDENKRDSGFLTYIDAC 138 Query: 124 SIPE-DLPCQAFAVIKGDSISLS-----------IAAASIIAKVTRDRLMRIAHKKYPDY 171 S E Q A + +I L ++AASIIAKV RD ++ ++KY Sbjct: 139 SSNETSFSNQLKAKLINKNIDLIAEHKADDNYKIVSAASIIAKVNRDNIIDSYNEKYEAL 198 Query: 172 GFDSHVGYPT 181 G+ GYP+ Sbjct: 199 GYTIGSGYPS 208 >gi|47095070|ref|ZP_00232683.1| ribonuclease HIII, putative [Listeria monocytogenes str. 1/2a F6854] gi|254830018|ref|ZP_05234673.1| ribonuclease HIII [Listeria monocytogenes 10403S] gi|254898611|ref|ZP_05258535.1| ribonuclease HIII [Listeria monocytogenes J0161] gi|254911900|ref|ZP_05261912.1| ribonuclease HIII [Listeria monocytogenes J2818] gi|254936225|ref|ZP_05267922.1| rnhC [Listeria monocytogenes F6900] gi|284801548|ref|YP_003413413.1| ribonuclease HIII [Listeria monocytogenes 08-5578] gi|284994690|ref|YP_003416458.1| ribonuclease HIII [Listeria monocytogenes 08-5923] gi|47016688|gb|EAL07608.1| ribonuclease HIII, putative [Listeria monocytogenes str. 1/2a F6854] gi|258608815|gb|EEW21423.1| rnhC [Listeria monocytogenes F6900] gi|284057110|gb|ADB68051.1| ribonuclease HIII [Listeria monocytogenes 08-5578] gi|284060157|gb|ADB71096.1| ribonuclease HIII [Listeria monocytogenes 08-5923] gi|293589858|gb|EFF98192.1| ribonuclease HIII [Listeria monocytogenes J2818] Length = 293 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 33/158 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 78 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124 +++ + + + K +++ + A+ H A+EN+ + P + LID + Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTYYR 197 Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 I ED+ F K + + LS+AAASIIA+ Sbjct: 198 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 231 >gi|159118024|ref|XP_001709231.1| Ribonuclease HI, large sub [Giardia lamblia ATCC 50803] gi|157437347|gb|EDO81557.1| Ribonuclease HI, large sub [Giardia lamblia ATCC 50803] Length = 243 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 95/230 (41%), Gaps = 53/230 (23%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKREELYEKI--- 75 + GIDE GRG + GP+V I P + G+ DSK +S RE +Y ++ Sbjct: 2 IVGIDEAGRGPVCGPLVY-GIAWMPAEVYQTGILEKLGVTDSKALSANTREHIYNRLQDL 60 Query: 76 ------TSSAIISISSASHQYIDKH--NIHKATLDA---------IYHAVENLQ---VIP 115 ++AI+S S + H +++ + +A I H +E++ V P Sbjct: 61 PKEDFGCNTAIVSADQISRAMLAPHKTSLNLLSFEAARSLLYQLFISHEIEHVYIDLVGP 120 Query: 116 RSALIDGRSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAH--------- 165 S I E +P A + K D+ AASI+AKV RDR ++ Sbjct: 121 ESQY--AAYIRELMPSIALTICAKADAKYPITGAASIVAKVIRDRNIKPQWGSGYPSDPK 178 Query: 166 -KKYPD------YGFDSHV--GYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 KKY D YGF +H+ + T K K C+ + PL N Sbjct: 179 TKKYLDKTCHGIYGFPTHIRHSWETIKRIYDTASKCVKCVF-IADTPLEN 227 >gi|282908430|ref|ZP_06316261.1| LOW QUALITY PROTEIN: ribonuclease HIII [Staphylococcus aureus subsp. aureus WW2703/97] gi|282328095|gb|EFB58377.1| LOW QUALITY PROTEIN: ribonuclease HIII [Staphylococcus aureus subsp. aureus WW2703/97] Length = 247 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 30/168 (17%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G DE G G GP+ V A + ++P G++DSKK++ K EL E++ + S+ Sbjct: 83 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 142 Query: 84 SSASHQYIDKHNIHKAT------LDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127 + + +K+NI +A + A+ H A++N L+ I S L ID + E Sbjct: 143 LTLHN---EKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 199 Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 LP + KG+S SL+IA ASII++ M KKY Sbjct: 200 HYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFITYMDQISKKY 247 >gi|254828588|ref|ZP_05233275.1| rnhC [Listeria monocytogenes FSL N3-165] gi|258600986|gb|EEW14311.1| rnhC [Listeria monocytogenes FSL N3-165] Length = 293 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 33/158 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 78 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124 +++ + + + K +++ + A+ H A+EN+ + P + LID + Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTYYR 197 Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 I ED+ F K + + LS+AAASIIA+ Sbjct: 198 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 231 >gi|16800260|ref|NP_470528.1| ribonuclease HIII [Listeria innocua Clip11262] gi|20978705|sp|Q92CI0|RNH3_LISIN RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|16413650|emb|CAC96422.1| rnhC [Listeria innocua Clip11262] Length = 308 Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 33/158 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK---ITSS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EK I Sbjct: 93 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPIVPH 152 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124 +++ + + + K +++ + A+ H A+EN+ + P + LID + Sbjct: 153 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTYYR 212 Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 I ED+ F K + + LS+AAASIIA+ Sbjct: 213 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 246 >gi|224502477|ref|ZP_03670784.1| ribonuclease HIII [Listeria monocytogenes FSL R2-561] Length = 281 Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 33/158 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 66 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 125 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124 +++ + + + K +++ + A+ H A+EN+ + P + LID + Sbjct: 126 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTYYR 185 Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 I ED+ F K + + LS+AAASIIA+ Sbjct: 186 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 219 >gi|327281022|ref|XP_003225249.1| PREDICTED: ribonuclease H2 subunit A-like [Anolis carolinensis] Length = 300 Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 30/163 (18%) Query: 28 GIDEVGRGALAGPVVVA----AIILDPNNIPFGINDSKKISHKKREELYEKITSSA---- 79 GIDE GRG + GP+V + + + DSK ++ +RE+L+EK+ ++ Sbjct: 32 GIDEAGRGPVLGPMVYGICYCPVARQGDLEAIKVADSKTLTEAQREQLFEKLDAAKDFVG 91 Query: 80 ----IIS--ISSASHQYIDKHNI----HKATLDAIYHAVEN-LQVIPRSALIDG------ 122 I+S S S Q K+N+ H + I HA+++ +QV +D Sbjct: 92 WALHILSPNFISTSMQRRAKYNLNALSHDTAIGLIQHALDSGVQVA--EVFVDTVGPAEK 149 Query: 123 --RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMR 162 + + P V K DS+ ++AASI AKV RDR+++ Sbjct: 150 YQEKLKQQFPGLEVTVKPKADSLFPVVSAASICAKVARDRVVK 192 >gi|300173789|ref|YP_003772955.1| ribonuclease hiii [Leuconostoc gasicomitatum LMG 18811] gi|299888168|emb|CBL92136.1| ribonuclease hiii [Leuconostoc gasicomitatum LMG 18811] Length = 309 Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 32/177 (18%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA 79 W V G DEVG GA GP+ AA+ + NI + GI DSK ++ K ++ I + Sbjct: 94 WSVLGSDEVGAGAYFGPLTTAAVFVAKENISWVRQLGIADSKTLTDAKMRQIAPDIIAKL 153 Query: 80 ---IISISSASHQYIDKHNIHKATLDAIYH------AVENLQ-VIPRSALID-------- 121 ++++ + + K+N + + AI H +E + +P LID Sbjct: 154 PHHVVNLMPEKYNILQKNN-NVNQMKAISHNFALGKVLEKIAPTVPTGILIDQFAQESTY 212 Query: 122 ----GRSIPEDLPCQ-AFAVIKGDSISLSIAAASIIAKVTR----DRLMRIAHKKYP 169 + ++ Q + KG+ LS+AAASI+A+V D+L A + P Sbjct: 213 FKYLNNANQSNIVQQNVYFTTKGEQYHLSVAAASILARVVELDSLDKLSDEAGMRLP 269 >gi|261402294|ref|YP_003246518.1| ribonuclease HII [Methanocaldococcus vulcanius M7] gi|261369287|gb|ACX72036.1| ribonuclease HII [Methanocaldococcus vulcanius M7] Length = 233 Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 43/188 (22%), Positives = 83/188 (44%), Gaps = 36/188 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 + G+DE GRG + GP+VV A ++ + G+ DSK +S KR +L +++ + Sbjct: 5 IVGVDEAGRGPVLGPMVVCAFAIEKDREDLLRDLGVKDSKLLSKSKRSQLKKQLERIGYV 64 Query: 82 S----ISSASHQYIDKHNIHKATLDAIYHAV-----------ENLQVIPRSALIDGRSIP 126 ++ + ++K N+++ ++A + E L++ + + + Sbjct: 65 KKKILTANEINTLMNKINLNEIEINAFSEVIMGLINDLNLKDEYLEIYVDACSTNAKKFE 124 Query: 127 -------------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 ++L + A K D +++ASIIAK RD ++ KKY + G Sbjct: 125 NELKNRIKDIENQKNLKIKVIAEHKADLKYPIVSSASIIAKADRDEIIEQYKKKYGEIG- 183 Query: 174 DSHVGYPT 181 GYP+ Sbjct: 184 ---SGYPS 188 >gi|183231893|ref|XP_001913636.1| ribonuclease H2 subunit A [Entamoeba histolytica HM-1:IMSS] gi|169802278|gb|EDS89588.1| ribonuclease H2 subunit A, putative [Entamoeba histolytica HM-1:IMSS] Length = 354 Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 29/162 (17%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITSSAIISISS 85 GIDE GRG + GP+V +A + G +DSK +S RE+L+ I S + S+ Sbjct: 18 GIDEAGRGPVLGPMVYSAFFTTNTEVISTMGFHDSKILSRTMREKLFTDIKESGVCGFST 77 Query: 86 --ASHQYIDKHNI--HKATLDAI-YHAVENL--QVIPRS-------------------AL 119 + YI + K +L+ I + AV ++ Q+I S A+ Sbjct: 78 RILTPSYISQMMCGPQKVSLNEIAFSAVRDIIHQIIRTSQRKIVHIYCDTVGPSKKYQAM 137 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM 161 I E Q K D + ++AASI AKVTRD + Sbjct: 138 I-ANEFKEVKLSQITVCPKADGLYPVVSAASICAKVTRDTCL 178 >gi|134114978|ref|XP_773787.1| hypothetical protein CNBH2390 [Cryptococcus neoformans var. neoformans B-3501A] gi|50256415|gb|EAL19140.1| hypothetical protein CNBH2390 [Cryptococcus neoformans var. neoformans B-3501A] Length = 326 Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 43/179 (24%) Query: 26 VAGIDEVGRGALAGPVVVAA----IILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG + GP+V AA + P G +DSK +S + R+ L+E + Sbjct: 38 IMGIDEAGRGPVLGPMVYAAAYCPLSFKPILESIGFDDSKALSAETRQTLWESFDVHPPL 97 Query: 82 SISSA--SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED----------- 128 SS+ S Q I + + K ++ A + + ++AL G ++ E Sbjct: 98 CYSSSTLSPQDISSNMLRKVPINLNRQAEDATVGLIQAALNRGINVTEASFSCSLAASCW 157 Query: 129 -------------------------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLM 161 P F V K DS+ + AASI+AKVTRDR + Sbjct: 158 LTICLKCYVDALGPAPQWQARLTAIFPTIKFTVCPKADSLFKIVGAASIVAKVTRDRYV 216 >gi|167378158|ref|XP_001734698.1| ribonuclease H2 subunit A [Entamoeba dispar SAW760] gi|165903720|gb|EDR29164.1| ribonuclease H2 subunit A, putative [Entamoeba dispar SAW760] Length = 270 Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 71/163 (43%), Gaps = 31/163 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITSSAIISISS 85 GIDE GRG + GP+V +A I G +DSK +S RE+L+ I SA+ S+ Sbjct: 18 GIDEAGRGPVLGPMVYSAFFTTNTEIISTMGFHDSKILSRTMREKLFSDIKESAVCGFST 77 Query: 86 --ASHQYIDKHNI--HKATLDAI-YHAVENLQVIPRSALIDGRSIP-------------- 126 + YI K +L+ I + AV + +I + I R I Sbjct: 78 RILTPSYISHLMCGPQKVSLNEIAFGAVRD--IIHQIIRISQRKIVHIYCDTVGPSGKYQ 135 Query: 127 -------EDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLM 161 +D+ V K D + ++AASI AKVTRD + Sbjct: 136 MMIANEFKDIKLNQITVCPKADGLYPVVSAASICAKVTRDTCL 178 >gi|311248923|ref|XP_003123380.1| PREDICTED: ribonuclease H2 subunit A-like [Sus scrofa] Length = 301 Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 28/183 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK------- 74 V G+DE GRG + GP+V A + + + DSK +S +R+ L+ K Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFAKMEEDGDF 89 Query: 75 ------ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + S +IS S + +++ T + + V +D +PE Sbjct: 90 VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGLPET 149 Query: 129 LP---CQAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177 Q F I K D++ ++AASI AKV RD+ +R +K D D Sbjct: 150 YQERLQQRFPDIEVTVKAKADALYPVVSAASICAKVARDQAVRNWQFVEKLQDLDTDYGS 209 Query: 178 GYP 180 GYP Sbjct: 210 GYP 212 >gi|259047147|ref|ZP_05737548.1| ribonuclease HIII [Granulicatella adiacens ATCC 49175] gi|259036197|gb|EEW37452.1| ribonuclease HIII [Granulicatella adiacens ATCC 49175] Length = 270 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 24/155 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS-- 77 W V G DEVG GA GP+ VA+ + NIP G+ DSK ++ ++ KI Sbjct: 56 WSVMGSDEVGNGAYFGPLTVASAYVSKENIPLLKKMGVKDSKDLTDEQIRAFVPKIKEVI 115 Query: 78 -SAIISISSASH---QYIDKHNIHKATLDAIYHAVENLQVIPRSA---LIDGRSIPE--- 127 ++++ + Q + N KA L + + +++P S LID PE Sbjct: 116 PYKLLTLWPEKYNEVQQVKNLNEMKALLHNQALRLLSEKIMPESPEGFLIDQFCKPELYY 175 Query: 128 ----DLPC----QAFAVIKGDSISLSIAAASIIAK 154 P + + + KG+S +++AAAS+IA+ Sbjct: 176 RYLKGQPLVDKNKTYFITKGESHHIAVAAASMIAR 210 >gi|332252995|ref|XP_003275638.1| PREDICTED: ribonuclease H2 subunit A-like [Nomascus leucogenys] Length = 299 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 28/193 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK------- 74 V G+DE GRG + GP+V A + + + DSK + +RE L+ K Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLLESERERLFAKMEDRDFV 89 Query: 75 -----ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 + S +IS S + +++ T + + V +D +PE Sbjct: 90 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETY 149 Query: 130 PC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHVG 178 Q+F I K D++ ++AASI AKV RD+ ++ +K D D G Sbjct: 150 QAWLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSG 209 Query: 179 YPT-AKHQQVIKE 190 YP K + +KE Sbjct: 210 YPNDPKTKAWLKE 222 >gi|227431089|ref|ZP_03913147.1| ribonuclease HIII [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353129|gb|EEJ43297.1| ribonuclease HIII [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 303 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 38/164 (23%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA 79 W V G DEVG GA GP+ AA+ + N+ + GI DSK ++ + +++ +I + Sbjct: 89 WSVLGSDEVGAGAYFGPLTTAAVYVSQENLEWVRALGIADSKTLTDDRMKKIAPQIIAQL 148 Query: 80 ---IISISSASHQYIDK-HNIHKATLDAIYHAVENLQVI-------PRSALID------- 121 ++++ + + HN+++ + AI H +V+ P++ LID Sbjct: 149 PHHVVNLMPEKYNQLQPLHNVNQ--MKAISHNFALGKVLDKIFPITPQAILIDQFAQQST 206 Query: 122 ----------GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKV 155 R I E++ + KG+ LS+AAASI+A+V Sbjct: 207 YFNYLKNAKQQRIIHENV----YFTTKGEQYHLSVAAASILARV 246 >gi|315282003|ref|ZP_07870510.1| ribonuclease hiii [Listeria marthii FSL S4-120] gi|313614348|gb|EFR87985.1| ribonuclease hiii [Listeria marthii FSL S4-120] Length = 293 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 33/158 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK---ITSS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EK I Sbjct: 78 VVGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPIVPH 137 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124 +++ + + + + +++ + A+ H A+EN+ V P + LID + Sbjct: 138 SVLLCPNPKYNELQQRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 197 Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 + ED+ F K + + LS+AAASIIA+ Sbjct: 198 YLAQEPSIVREDV----FFATKAEGLHLSVAAASIIAR 231 >gi|308159908|gb|EFO62424.1| Ribonuclease HI, large sub [Giardia lamblia P15] Length = 243 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 77/187 (41%), Gaps = 44/187 (23%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKREELYEKI--- 75 + GIDE GRG + GP+V I P + G+ DSK +S RE +Y K+ Sbjct: 2 IVGIDEAGRGPVCGPLVY-GIAWMPAEVYQTGILEKLGVTDSKALSADAREHIYSKLHDL 60 Query: 76 ------TSSAIISISSASHQYIDKHNI------HKATLDAIYHAVENLQ--------VIP 115 ++AI+S S + H +A +Y + + V P Sbjct: 61 PKEDFGCNTAIVSADQISRAMLAPHKTSLNLLSFEAARSLLYQLFTSYEIEHVYIDLVSP 120 Query: 116 RSALIDGRSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174 S I E +P A + K D+ AASIIAKVTRD+ ++ P +G Sbjct: 121 ESQY--ATYIHELMPNIALTICAKADAKYPITGAASIIAKVTRDKHIK------PQWG-- 170 Query: 175 SHVGYPT 181 GYP+ Sbjct: 171 --SGYPS 175 >gi|256078514|ref|XP_002575540.1| ribonuclease hi large subunit [Schistosoma mansoni] gi|238660781|emb|CAZ31773.1| ribonuclease hi large subunit, putative [Schistosoma mansoni] Length = 290 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 32/169 (18%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-----S 78 GIDE GRG + GP+V A + + + G+ DSK ++ +RE+L +++ + S Sbjct: 3 GIDEAGRGPVLGPMVYACALSPISQLNELETIGLADSKTLNENQREKLLKEMLNKCDWIS 62 Query: 79 AIISISSA---SHQYIDKHNIHKATLDAIYH--AVENLQVIPRSAL------IDGRSIPE 127 A++ + S + + +DK K +L+ I H A++ +Q + S + +D E Sbjct: 63 AVVHVISPVYITEKMLDK---SKTSLNVISHDSAIQLIQSVLDSGVNLVEVYVDTVGKAE 119 Query: 128 DLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + + K D ++AASI AKVTRDR++++ K+ Sbjct: 120 HYETKLQNLFPQLKIRVESKADDTYPIVSAASIFAKVTRDRVLQMWPKE 168 >gi|116872599|ref|YP_849380.1| ribonuclease HIII [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741477|emb|CAK20601.1| ribonuclease HIII [Listeria welshimeri serovar 6b str. SLCC5334] Length = 293 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 33/158 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK---ITSS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EK I Sbjct: 78 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPIVPH 137 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVENL--QVIPR---SALIDGRS------- 124 +++ + + + K +++ + A+ H A+EN+ ++ PR + LID + Sbjct: 138 SVLLCPNPKYNELQKKGMNQGQMKALLHNRAIENVLKKLAPRKPEAILIDQFAEKNTYYR 197 Query: 125 --------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 I ED+ F K + + LS+AAASIIA+ Sbjct: 198 YLAKEPSIIREDV----FFATKAEGLHLSVAAASIIAR 231 >gi|289192478|ref|YP_003458419.1| ribonuclease HII [Methanocaldococcus sp. FS406-22] gi|288938928|gb|ADC69683.1| ribonuclease HII [Methanocaldococcus sp. FS406-22] Length = 230 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 36/188 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITS---- 77 V GIDE GRG + GP+VV A + + G+ DSK+++ KR L + + Sbjct: 3 VIGIDEAGRGPVLGPMVVCAFAIEKDKEEELKKLGVRDSKELTKNKRAYLKKLLEDLGYV 62 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENL-----------QVIPRSALIDGRSIP 126 +I + +Q + N+++ ++A ENL ++ + + + Sbjct: 63 EKLILEAEKINQLMSTINLNEIEINAFSKVAENLIEKLGIKDEKIEIYLDACSTNAKKFE 122 Query: 127 EDLPCQAFAVIKGDSISLSI-------------AAASIIAKVTRDRLMRIAHKKYPDYGF 173 D + +IK ++++ I +AASIIAK RD ++ K Y D G Sbjct: 123 NDFKEKLDNIIKERNLNVKIIAEHKADAKYSVVSAASIIAKAERDEIIDNYKKIYGDIG- 181 Query: 174 DSHVGYPT 181 GYP+ Sbjct: 182 ---SGYPS 186 >gi|321312395|ref|YP_004204682.1| ribonuclease HIII [Bacillus subtilis BSn5] gi|320018669|gb|ADV93655.1| ribonuclease HIII [Bacillus subtilis BSn5] Length = 312 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 38/206 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS--- 78 V G DEVG G GP+ V +D +P G+ DSK + + E+ + + Sbjct: 95 VIGSDEVGTGDYFGPMTVVCAYVDKTMLPLMKELGVKDSKDLKDPQIIEIARNLIKTIPY 154 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALID---------- 121 +++ + + + + + + + + A+ H A+ +L + P + LID Sbjct: 155 SLLVLKNEKYNSMQEKGMSQGKMKALLHNQAITHLLRKMDGIKPEAILIDQFAEPGVYFN 214 Query: 122 ---GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174 GR I ++ + + K + I L++AAASIIA+ + D+L R A P G Sbjct: 215 HLKGRDIVKE---RTYFSTKAEGIHLAVAAASIIARYSFLMEMDKLSREAGMTLPK-GAG 270 Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLT 200 HV AK +I +KG S + T Sbjct: 271 PHVDEAAAK---LILKKGASALRTFT 293 >gi|116618810|ref|YP_819181.1| ribonuclease HIII [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122270990|sp|Q03VG4|RNH3_LEUMM RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|116097657|gb|ABJ62808.1| Ribonuclease HIII [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 303 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 38/164 (23%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA 79 W V G DEVG GA GP+ AA+ + N+ + GI DSK ++ + +++ +I + Sbjct: 89 WSVLGSDEVGAGAYFGPLTTAAVYVSQENLEWVRALGIADSKTLTDDRMKKIAPQIIAKL 148 Query: 80 ---IISISSASHQYIDK-HNIHKATLDAIYHAVENLQVI-------PRSALID------- 121 ++++ + + HN+++ + AI H +V+ P++ LID Sbjct: 149 PHHVVNLMPEKYNQLQPLHNVNQ--MKAISHNFALGKVLDKISPITPQAILIDQFAQQST 206 Query: 122 ----------GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKV 155 R I E++ + KG+ LS+AAASI+A+V Sbjct: 207 YFNYLKNAKQQRIIHENV----YFTTKGEQYHLSVAAASILARV 246 >gi|158297564|ref|XP_317779.3| AGAP007741-PA [Anopheles gambiae str. PEST] gi|157015256|gb|EAA12465.3| AGAP007741-PA [Anopheles gambiae str. PEST] Length = 342 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 29/165 (17%) Query: 28 GIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS----- 78 G+DE GRG + GP+V +A L +I G DSK+++ +KR+++++++ Sbjct: 69 GVDEAGRGPVLGPMVYGIAFCPLSKKDILKQLGFADSKQLTEEKRDQIFDEMNRKDFAKT 128 Query: 79 ----AIISIS----SASHQYIDKHNIHKATLDA---IYHAVENLQVIPRSALIDGRSIPE 127 A+ +IS S KH++++ ++D+ + ++ + V +D PE Sbjct: 129 ALGWAVEAISPNVISMCMLRRTKHSLNEVSMDSAIGLINSAIDAGVNIAEVYVDTVGPPE 188 Query: 128 DLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRI 163 + A+ K DS ++AASI AKVTRD +++ Sbjct: 189 KYQAKLKAIFPKFKITVAKKADSTYPIVSAASIAAKVTRDHALKV 233 >gi|296331590|ref|ZP_06874059.1| ribonuclease HIII [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675451|ref|YP_003867123.1| ribonuclease HIII [Bacillus subtilis subsp. spizizenii str. W23] gi|296151185|gb|EFG92065.1| ribonuclease HIII [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413695|gb|ADM38814.1| ribonuclease HIII [Bacillus subtilis subsp. spizizenii str. W23] Length = 313 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 38/206 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS--- 78 V G DEVG G GP+ V +D +P G+ DSK + + E+ + + Sbjct: 96 VIGSDEVGTGDYFGPMTVVCAYVDKTMLPLMKELGVKDSKDLKDPQIIEIARNLIKTIPY 155 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALID---------- 121 +++ + + + + + + + + A+ H A+ +L P + LID Sbjct: 156 SLLVLKNEKYNSMQEKGMSQGKMKALLHNQAITHLLRKMDGAKPEAILIDQFAEPGVYFN 215 Query: 122 ---GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174 GR I + + + K + I LS+AAASIIA+ + D+L R A P G Sbjct: 216 HLKGRDIVRE---RTYFSTKAEGIHLSVAAASIIARYSFLMEMDKLSREAGMTLPK-GAG 271 Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLT 200 HV AK +I +KG S + T Sbjct: 272 PHVDEAAAK---LILKKGASALRTFT 294 >gi|84999888|ref|XP_954665.1| ribonuclease h1 large subunit [Theileria annulata] gi|65305660|emb|CAI73985.1| ribonuclease h1 large subunit, putative [Theileria annulata] Length = 277 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 89/194 (45%), Gaps = 41/194 (21%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIIL----DPNNI---PFGINDSKKISHKKREELYE 73 K+ + + GIDE GRG + GP+V + N+I ++DSKK+S RE + Sbjct: 20 KSDYVILGIDEAGRGPVLGPMVYGGFFCTKGDNCNSILKNKIKVDDSKKLSESMRENKFY 79 Query: 74 KITS--------SAIISISSASHQYI--DKHNI----HKATLDAIYHAVE---NLQVIPR 116 ++ + +I+ S++ + +K+N+ H + I H + NL+ + Sbjct: 80 QLNDPDHPFGVVAEVITPQYISYKMLQREKYNLNEISHDTAISIIRHVLSHGYNLKEVYI 139 Query: 117 SALIDGRSIPEDL----PCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 A+ L P F+V K DSI +++AASI+AKV RD +++ + Sbjct: 140 DAVGTVNKYESKLSKMFPKIQFSVREKADSIYPTVSAASIVAKVIRDNIIKT-------W 192 Query: 172 GFDSHV-----GYP 180 FD V GYP Sbjct: 193 KFDFEVENIGSGYP 206 >gi|311069353|ref|YP_003974276.1| ribonuclease HIII [Bacillus atrophaeus 1942] gi|310869870|gb|ADP33345.1| ribonuclease HIII [Bacillus atrophaeus 1942] Length = 313 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 38/210 (18%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 M V G DEVG G GP+ VA +D + + G+ DSK + + E+ + + Sbjct: 93 GMMSVIGSDEVGTGDYFGPMTVACAYVDKSKLALMKELGVKDSKHLKDPQIIEIAKSLIK 152 Query: 78 S---AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALID------ 121 + +++ +++ + + + + + + A+ H A+ +L + P + LID Sbjct: 153 TIPYSLLILNNEKYNKLQEKGMSQGKMKALLHNQAIGHLLKKMDGIKPEAILIDQFAEPS 212 Query: 122 -------GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPD 170 G+ I ++ + + K + I LS+AAASIIA+ + D+L R A P Sbjct: 213 IYFKHLAGKDIVKE---RTYFSTKAEGIHLSVAAASIIARYSFLMEMDKLSREAGMVIPK 269 Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 G HV AK +I +KG S + T Sbjct: 270 -GAGPHVDEACAK---LILKKGESALRTFT 295 >gi|313624050|gb|EFR94134.1| ribonuclease hiii [Listeria innocua FSL J1-023] Length = 293 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 25/154 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK---ITSS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EK I Sbjct: 78 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPIVPH 137 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRS------- 124 +++ + + + + +++ + A+ H A+EN+ V P + LID + Sbjct: 138 SVLLCPNPKYNELQQRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 197 Query: 125 ----IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 P + F K + + LS+AAASIIA+ Sbjct: 198 YLAKEPSIIRDDVFFATKAEGLHLSVAAASIIAR 231 >gi|58037175|ref|NP_081463.1| ribonuclease H2 subunit A [Mus musculus] gi|85541053|sp|Q9CWY8|RNH2A_MOUSE RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|312208159|pdb|3P5J|A Chain A, The Structure Of The Human Rnase H2 Complex Defines Key Interaction Interfaces Relevant To Enzyme Function And Human Disease gi|23273263|gb|AAH38158.1| Ribonuclease H2, large subunit [Mus musculus] gi|74138850|dbj|BAE27230.1| unnamed protein product [Mus musculus] Length = 301 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 74/184 (40%), Gaps = 28/184 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK------- 74 V G+DE GRG + GP+V A + + + DSK ++ +RE L+ K Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDF 89 Query: 75 ------ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + S +IS S + +++ T + + V +D +PE Sbjct: 90 VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPET 149 Query: 129 LPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177 Q F I K DS+ ++AASI AKV RD+ ++ + D D Sbjct: 150 YQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGS 209 Query: 178 GYPT 181 GYP Sbjct: 210 GYPN 213 >gi|48145799|emb|CAG33122.1| JUNB [Homo sapiens] Length = 299 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 82/194 (42%), Gaps = 30/194 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 V G+DE GRG + GP+V A + + DSK + +RE L+ K+ + + Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFV 89 Query: 82 SIS---------SASHQYIDKHNI----HKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + S S K+N+ H I +A++ V +D +PE Sbjct: 90 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQ-GVNVTQVFVDTVGMPET 148 Query: 129 LPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177 Q+F I K D++ ++AASI AKV RD+ ++ +K D D Sbjct: 149 YQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGS 208 Query: 178 GYPT-AKHQQVIKE 190 GYP K + +KE Sbjct: 209 GYPNDPKTKAWLKE 222 >gi|12845627|dbj|BAB26828.1| unnamed protein product [Mus musculus] Length = 301 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 74/184 (40%), Gaps = 28/184 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK------- 74 V G+DE GRG + GP+V A + + + DSK ++ +RE L+ K Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDF 89 Query: 75 ------ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + S +IS S + +++ T + + V +D +PE Sbjct: 90 VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDRNVNVTQVFVDTVGMPET 149 Query: 129 LPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177 Q F I K DS+ ++AASI AKV RD+ ++ + D D Sbjct: 150 YQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGS 209 Query: 178 GYPT 181 GYP Sbjct: 210 GYPN 213 >gi|71031853|ref|XP_765568.1| ribonuclease H1 large subunit [Theileria parva strain Muguga] gi|68352525|gb|EAN33285.1| ribonuclease H1 large subunit, putative [Theileria parva] Length = 277 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 41/189 (21%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL----DPNNI---PFGINDSKKISHKKREELYEKITS- 77 + GIDE GRG + GP+V D +I ++DSKK++ RE + ++ Sbjct: 25 ILGIDEAGRGPVLGPMVYGGFFCIKGDDCKSILKNKIRVDDSKKLTETMRENKFYQLNDP 84 Query: 78 -------SAIISISSASHQYI--DKHNI----HKATLDAIYHAVE---NLQVIPRSALID 121 + +I+ S++ + DK+N+ H + I H ++ NL+ + A+ Sbjct: 85 NYPFGVVAEVITPQYISYKMLQRDKYNLNEISHDTAISIIRHVLDHGYNLKEVYIDAVGT 144 Query: 122 GRSIPEDL----PCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 L P F+V K DSI +++AASI+AKV RD +++ ++ FD Sbjct: 145 VNKYEAKLSKLFPKIHFSVREKADSIYPTVSAASIVAKVIRDNIIK-------NWKFDFE 197 Query: 177 V-----GYP 180 V GYP Sbjct: 198 VENIGSGYP 206 >gi|329725159|gb|EGG61648.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 21172] Length = 318 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G DE G G GP+ V A + ++P G++DSKK++ K EL E++ + S+ Sbjct: 105 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVAFIPHSL 164 Query: 84 SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127 + + DK+NI +A + A+ H A++N L+ I S L ID + E Sbjct: 165 LTLHN---DKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 221 Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154 LP + KG+S SL+IA ASII++ Sbjct: 222 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 255 >gi|38455391|ref|NP_006388.2| ribonuclease H2 subunit A [Homo sapiens] gi|20981704|sp|O75792|RNH2A_HUMAN RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=Aicardi-Goutieres syndrome 4 protein; Short=AGS4; AltName: Full=RNase H(35); AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|15079910|gb|AAH11748.1| Ribonuclease H2, subunit A [Homo sapiens] gi|119604719|gb|EAW84313.1| ribonuclease H2, large subunit [Homo sapiens] gi|189067523|dbj|BAG37728.1| unnamed protein product [Homo sapiens] Length = 299 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 82/194 (42%), Gaps = 30/194 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 V G+DE GRG + GP+V A + + DSK + +RE L+ K+ + + Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFV 89 Query: 82 SIS---------SASHQYIDKHNI----HKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + S S K+N+ H I +A++ V +D +PE Sbjct: 90 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQ-GVNVTQVFVDTVGMPET 148 Query: 129 LPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177 Q+F I K D++ ++AASI AKV RD+ ++ +K D D Sbjct: 149 YQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGS 208 Query: 178 GYPT-AKHQQVIKE 190 GYP K + +KE Sbjct: 209 GYPNDPKTKAWLKE 222 >gi|3334761|emb|CAB09725.1| ribonuclease HI large subunit [Homo sapiens] Length = 299 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 82/194 (42%), Gaps = 30/194 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 V G+DE GRG + GP+V A + + DSK + +RE L+ K+ + + Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFV 89 Query: 82 SIS---------SASHQYIDKHNI----HKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + S S K+N+ H I +A++ V +D +PE Sbjct: 90 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQ-GVNVTQVFVDTVGMPET 148 Query: 129 LPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177 Q+F I K D++ ++AASI AKV RD+ ++ +K D D Sbjct: 149 YQAQLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGS 208 Query: 178 GYPT-AKHQQVIKE 190 GYP K + +KE Sbjct: 209 GYPNDPKTKAWLKE 222 >gi|315364763|pdb|3PUF|A Chain A, Crystal Structure Of Human Rnase H2 Complex gi|315364766|pdb|3PUF|D Chain D, Crystal Structure Of Human Rnase H2 Complex gi|315364769|pdb|3PUF|G Chain G, Crystal Structure Of Human Rnase H2 Complex gi|315364772|pdb|3PUF|J Chain J, Crystal Structure Of Human Rnase H2 Complex gi|315364775|pdb|3PUF|M Chain M, Crystal Structure Of Human Rnase H2 Complex gi|315364778|pdb|3PUF|P Chain P, Crystal Structure Of Human Rnase H2 Complex Length = 302 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 82/194 (42%), Gaps = 30/194 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 V G+DE GRG + GP+V A + + DSK + +RE L+ K+ + + Sbjct: 33 VLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFV 92 Query: 82 SIS---------SASHQYIDKHNI----HKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + S S K+N+ H I +A++ V +D +PE Sbjct: 93 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQ-GVNVTQVFVDTVGMPET 151 Query: 129 LPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177 Q+F I K D++ ++AASI AKV RD+ ++ +K D D Sbjct: 152 YQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGS 211 Query: 178 GYPT-AKHQQVIKE 190 GYP K + +KE Sbjct: 212 GYPNDPKTKAWLKE 225 >gi|269202752|ref|YP_003282021.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ED98] gi|262075042|gb|ACY11015.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ED98] Length = 312 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G DE G G GP+ V A + ++P G++DSKK++ K EL E++ + S+ Sbjct: 99 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVAFIPHSL 158 Query: 84 SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127 + + DK+NI +A + A+ H A++N L+ I S L ID + E Sbjct: 159 LTLHN---DKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 215 Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154 LP + KG+S SL+IA ASII++ Sbjct: 216 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 249 >gi|116284049|gb|AAH29252.1| Rnaseh2a protein [Mus musculus] Length = 254 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 28/183 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK------- 74 V G+DE GRG + GP+V A + + + DSK ++ +RE L+ K Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDF 89 Query: 75 ------ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + S +IS S + +++ T + + V +D +PE Sbjct: 90 VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPET 149 Query: 129 LPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177 Q F I K DS+ ++AASI AKV RD+ ++ + D D Sbjct: 150 YQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGS 209 Query: 178 GYP 180 GYP Sbjct: 210 GYP 212 >gi|15924130|ref|NP_371664.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus Mu50] gi|15926724|ref|NP_374257.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus N315] gi|148267632|ref|YP_001246575.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus JH9] gi|150393687|ref|YP_001316362.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus JH1] gi|156979462|ref|YP_001441721.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus Mu3] gi|253317077|ref|ZP_04840290.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005926|ref|ZP_05144527.2| ribonuclease HIII [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795130|ref|ZP_05644109.1| ribonuclease HIII [Staphylococcus aureus A9781] gi|258407162|ref|ZP_05680311.1| ribonuclease HIII [Staphylococcus aureus A9763] gi|258421747|ref|ZP_05684668.1| ribonuclease HIII [Staphylococcus aureus A9719] gi|258432909|ref|ZP_05688598.1| ribonuclease HIII [Staphylococcus aureus A9299] gi|258443399|ref|ZP_05691742.1| ribonuclease HIII [Staphylococcus aureus A8115] gi|258446072|ref|ZP_05694234.1| ribonuclease HIII [Staphylococcus aureus A6300] gi|258449815|ref|ZP_05697913.1| ribonuclease HIII [Staphylococcus aureus A6224] gi|258454914|ref|ZP_05702877.1| ribonuclease HIII [Staphylococcus aureus A5937] gi|282894167|ref|ZP_06302398.1| ribonuclease HIII [Staphylococcus aureus A8117] gi|282928662|ref|ZP_06336259.1| ribonuclease HIII [Staphylococcus aureus A10102] gi|295405944|ref|ZP_06815753.1| ribonuclease HIII [Staphylococcus aureus A8819] gi|296275627|ref|ZP_06858134.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MR1] gi|297246504|ref|ZP_06930342.1| ribonuclease HIII [Staphylococcus aureus A8796] gi|73917849|sp|Q99UW5|RNH3_STAAM RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|73917850|sp|Q7A647|RNH3_STAAN RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|166226672|sp|A7X163|RNH3_STAA1 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|189043676|sp|A6U0V7|RNH3_STAA2 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|189043677|sp|A5IS26|RNH3_STAA9 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|13700940|dbj|BAB42236.1| SA0987 [Staphylococcus aureus subsp. aureus N315] gi|14246910|dbj|BAB57302.1| putative ribonuclease HIII [Staphylococcus aureus subsp. aureus Mu50] gi|147740701|gb|ABQ48999.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus JH9] gi|149946139|gb|ABR52075.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus JH1] gi|156721597|dbj|BAF78014.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257789102|gb|EEV27442.1| ribonuclease HIII [Staphylococcus aureus A9781] gi|257841317|gb|EEV65762.1| ribonuclease HIII [Staphylococcus aureus A9763] gi|257842080|gb|EEV66508.1| ribonuclease HIII [Staphylococcus aureus A9719] gi|257849349|gb|EEV73326.1| ribonuclease HIII [Staphylococcus aureus A9299] gi|257851489|gb|EEV75428.1| ribonuclease HIII [Staphylococcus aureus A8115] gi|257855130|gb|EEV78071.1| ribonuclease HIII [Staphylococcus aureus A6300] gi|257856735|gb|EEV79638.1| ribonuclease HIII [Staphylococcus aureus A6224] gi|257862794|gb|EEV85559.1| ribonuclease HIII [Staphylococcus aureus A5937] gi|282589701|gb|EFB94787.1| ribonuclease HIII [Staphylococcus aureus A10102] gi|282763653|gb|EFC03782.1| ribonuclease HIII [Staphylococcus aureus A8117] gi|285816820|gb|ADC37307.1| Ribonuclease HIII [Staphylococcus aureus 04-02981] gi|294969379|gb|EFG45399.1| ribonuclease HIII [Staphylococcus aureus A8819] gi|297176610|gb|EFH35873.1| ribonuclease HIII [Staphylococcus aureus A8796] gi|312829533|emb|CBX34375.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128537|gb|EFT84542.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus CGS03] Length = 312 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G DE G G GP+ V A + ++P G++DSKK++ K EL E++ + S+ Sbjct: 99 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVAFIPHSL 158 Query: 84 SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127 + + DK+NI +A + A+ H A++N L+ I S L ID + E Sbjct: 159 LTLHN---DKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 215 Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154 LP + KG+S SL+IA ASII++ Sbjct: 216 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 249 >gi|290558916|gb|EFD92304.1| ribonuclease HII [Candidatus Parvarchaeum acidophilus ARMAN-5] gi|326422570|gb|EGD71965.1| Ribonuclease HII [Candidatus Parvarchaeum acidophilus ARMAN-5_'5-way FS'] Length = 218 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 33/191 (17%) Query: 28 GIDEVGRGALAGPVVVAAIIL--DPNN--IPFGINDSKKISHKK----REELYEKITSSA 79 GIDE GRG + GP+++A + + D +N G+ DSK +S K+ E+ + + Sbjct: 5 GIDEAGRGPVIGPMIIAGVGINEDISNEFKSIGVKDSKLLSIKRIYLLEREIKKSTQNYK 64 Query: 80 IISISSAS--HQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLP---- 130 I ISS +++ N++ LD++ +L +VI S + + I E L Sbjct: 65 TIKISSEEIDNRFEKGKNLNYLELDSMAVIANDLSGEKVIIDSPSSNTKKIKEYLQNLIK 124 Query: 131 -----CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----T 181 + +A D + ++AASI+AK R+R + K +G+D GYP T Sbjct: 125 RKIIIAENYA----DRNHVEVSAASILAKSEREREVDKIKKI---FGYDFGSGYPSDPKT 177 Query: 182 AKHQQVIKEKG 192 + ++IKE G Sbjct: 178 VEFLKIIKENG 188 >gi|323449222|gb|EGB05112.1| hypothetical protein AURANDRAFT_12637 [Aureococcus anophagefferens] Length = 229 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 55/203 (27%), Positives = 88/203 (43%), Gaps = 43/203 (21%) Query: 28 GIDEVGRGALAGPVVVAAI---ILDPNNIPFG---INDSKKISHKKREELYEKITS---- 77 GIDE GRG + G + I D + I I+DSK+++ +KR +L+++I + Sbjct: 12 GIDEAGRGPVLGAMTFGTCYWSIADDDAIEASQKEIDDSKQLTDEKRSKLFDRIAADERM 71 Query: 78 SAIISISSASHQYIDKHNIHKATLDAI-YHAVENL--QVIPRS-----ALIDGRSIPEDL 129 + + SA+ + + +L+AI + A L +V+ R A +D P+ Sbjct: 72 GWAVEVVSAARISAEMLQVKPTSLNAISFDATCRLIQRVLDRGADVVEAFVDTVGNPDSY 131 Query: 130 P---CQAF-------AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS---H 176 +AF K D++ AASI AKV RD + IA Y + G D Sbjct: 132 SERLTRAFDGKIKFTVAKKADALYKCTGAASICAKVCRD--LSIARWTYDEPGVDDLDFG 189 Query: 177 VGYPTAKHQQVIKEKGPSCIHRL 199 GYP+ P+C+ L Sbjct: 190 SGYPS----------DPACVAWL 202 >gi|148673841|gb|EDL05788.1| mCG129830, isoform CRA_a [Mus musculus] Length = 226 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 74/184 (40%), Gaps = 28/184 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK------- 74 V G+DE GRG + GP+V A + + + DSK ++ +RE L+ K Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDF 89 Query: 75 ------ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + S +IS S + +++ T + + V +D +PE Sbjct: 90 VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPET 149 Query: 129 LPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177 Q F I K DS+ ++AASI AKV RD+ ++ + D D Sbjct: 150 YQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGS 209 Query: 178 GYPT 181 GYP Sbjct: 210 GYPN 213 >gi|269986419|gb|EEZ92706.1| ribonuclease HII [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 218 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 40/190 (21%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA---- 79 GIDE GRG + GP+ +A I + + G+ DSK +S K+ L +I S+ Sbjct: 5 GIDEAGRGPVIGPMTIAGIGIGEDLAQKFKLIGVKDSKMLSIKRIYLLEREIIKSSNNFK 64 Query: 80 IISISSAS--HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 +I +S+ +++ + N++ LD + NL G ++ D P + I Sbjct: 65 VIKLSAEEIDNRFENGKNLNYLELDNMAEIANNLA---------GETVVIDSPSRNTEKI 115 Query: 138 K-----------------GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + D + ++AASIIAK R+R + K + G+D GYP Sbjct: 116 RLYLSKKIKDKKIIAENYADKNHIEVSAASIIAKANREREVEKIKK---ELGYDFGSGYP 172 Query: 181 TA-KHQQVIK 189 + K Q IK Sbjct: 173 SDPKTIQFIK 182 >gi|126466172|ref|YP_001041281.1| RNase HII [Staphylothermus marinus F1] gi|126014995|gb|ABN70373.1| RNase HII [Staphylothermus marinus F1] Length = 244 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 90/205 (43%), Gaps = 31/205 (15%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 GIDE GRG L G +V+A ++++ N I G+ DSK+++ R + +KI A +S Sbjct: 11 GIDEAGRGPLIGDLVIAVLMINRDKIKNLISIGVRDSKQLTRHTRLIMAKKILKLADNVS 70 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI----- 137 I S + ID +NI+K + I A+ L I I E + + + Sbjct: 71 IIYISPEMIDSYNINKIIAEKIIIALRMLSQIINHYRTVSIYIDEIKGYKNYILTNLSKY 130 Query: 138 -----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK--- 183 D ++AASI+AK RD+ + K Y ++G GYP+ K Sbjct: 131 INNIEEYVMEPNADQKYPVVSAASILAKTIRDKNIDFLKKIYGNFG----SGYPSDKITI 186 Query: 184 ---HQQVIKEKGPSCIHRLTFRPLR 205 + +E P I R T+ LR Sbjct: 187 KWLTKTYNEENEPPLIIRRTWSTLR 211 >gi|109123571|ref|XP_001109423.1| PREDICTED: ribonuclease H2 subunit A isoform 2 [Macaca mulatta] Length = 300 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 28/190 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK------- 74 V G+DE GRG + GP+V A +++ + DSK + +RE L+ K Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSHLADLEALKVADSKTLLESERERLFAKMEENRDF 89 Query: 75 ------ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + S +IS S + +++ T + + V +D +PE Sbjct: 90 VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPET 149 Query: 129 LPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177 Q+F I K D++ ++AASI AKV RD+ ++ +K D D Sbjct: 150 YQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWKFVEKLQDSDTDYGS 209 Query: 178 GYPTAKHQQV 187 GYP +V Sbjct: 210 GYPNDPKTKV 219 >gi|307103270|gb|EFN51532.1| hypothetical protein CHLNCDRAFT_140248 [Chlorella variabilis] Length = 259 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 14/116 (12%) Query: 56 GINDSKKISHKKREELYEKITSSA--------IISISSASHQYIDKHNIHKATLDAIYHA 107 G DSK ++ +KR+ L+ I + ++S + S + + + + +L+A+ A Sbjct: 20 GFADSKTLTEEKRDHLFGVIQAEGGMLGYQADVLSAAFISGKMLGRERV---SLNAL--A 74 Query: 108 VENLQVIPRSALIDGRSIPEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMR 162 E+ + + L G + + P F V K DS ++AASI+AKVTRDR +R Sbjct: 75 FESTCALIEAVLARGERLSQRFPGVQFVVEAKADSTYPIVSAASIVAKVTRDRTLR 130 >gi|82656278|emb|CAI80692.1| probable ribonuclease HIII [Staphylococcus aureus RF122] Length = 318 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G DE G G GP+ V A + ++P G++DSKK++ K EL E++ + S+ Sbjct: 105 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 164 Query: 84 SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127 + + +K+NI +A + A+ H AV+N L+ I S L ID + E Sbjct: 165 LTLHN---EKYNIQQAKGWTQVKMKAVLHNEAVKNVLEKIDSSQLDYIVIDQFAKREVYS 221 Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154 LP + KG+S SL+IA ASII++ Sbjct: 222 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 255 >gi|238883322|gb|EEQ46960.1| ribonuclease HI large subunit [Candida albicans WO-1] Length = 427 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 47/213 (22%) Query: 11 HFELEAMVREKNMWP-VAGIDEVGRGALAGPVVVA-AIILDPNNI----PFGINDSKKIS 64 H E+ V + P V G+DE GRG + GP+V A L+ + +G DSK ++ Sbjct: 136 HSEIPQSVLQNKTEPIVLGVDEAGRGPVLGPMVYGIAYSLESFSSKLQKEYGFADSKVLT 195 Query: 65 HKKREELYEKI---------------TSSAIISISSASHQYID---KHNIHKATLDAIYH 106 KREEL+++I T+ ISS Q ++ +N+++ D + Sbjct: 196 DVKREELFKQIEDPDHELHKHIGWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTIN 255 Query: 107 AVENLQVIPRSALIDG-----------------RSIPEDLPCQAFAVIKGDSISLSIAAA 149 ++ QV+ + I R PE K DSI ++ A Sbjct: 256 LIK--QVLAKGVKISKIFVDTVGPPVTYQAKLKRFFPE---IDVTVTKKADSIYPIVSTA 310 Query: 150 SIIAKVTRDRLMRIAHKKYPDY-GFDSHVGYPT 181 S++AKVTRD ++ ++ P G GYP+ Sbjct: 311 SVVAKVTRDTNIKFYNENLPLLQGQKLGSGYPS 343 >gi|209877739|ref|XP_002140311.1| ribonuclease HI large subunit [Cryptosporidium muris RN66] gi|209555917|gb|EEA05962.1| ribonuclease HI large subunit, putative [Cryptosporidium muris RN66] Length = 286 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 43/205 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA-- 79 + GIDE GRG + GP+V A N I+DSKK++ RE++ + I ++ Sbjct: 21 ILGIDEAGRGPVLGPMVFACFYYPTENEKLLKLMNIDDSKKLTENSREKINKDIRNNKNQ 80 Query: 80 ------IISISSASHQYIDKHNIHKATLDAIYH--AVENLQVIPRSAL------IDGRSI 125 I+ S Q + K K L+ I H A+ ++ + + + ID Sbjct: 81 FGWGIYILLPQYLSCQMLKK---QKYNLNEISHTAAINLIKSVLQHGVNVTHIYIDTVGP 137 Query: 126 PED--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRI-----AHKKYPDY 171 PE P V K DS+ ++ ASI+AKV RD + H +Y Sbjct: 138 PESYKKKLKLLFPSINITVTPKADSLYPCVSGASILAKVERDHFLSNWWSFPGHDRYDHN 197 Query: 172 G-----FDSHVGYP-TAKHQQVIKE 190 G ++ GYP K +Q +K+ Sbjct: 198 GNNLSIYEQGSGYPGDPKTKQFLKQ 222 >gi|295706825|ref|YP_003599900.1| ribonuclease HIII [Bacillus megaterium DSM 319] gi|294804484|gb|ADF41550.1| ribonuclease HIII [Bacillus megaterium DSM 319] Length = 304 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 25/167 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS--- 78 V G DEVG G GP+ V A + +P G+ DSK+++ K E+ +++ SS Sbjct: 89 VIGSDEVGTGDYFGPMTVVAAYVQKEQLPLLKELGVRDSKELTDAKIIEIAKQLVSSIPY 148 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVEN-LQVI----PRSALIDGR-------- 123 +++ + + + + + + + A+ H A+ N L+ + P + LID Sbjct: 149 SLLVLHNEKYNAFQEKGMSQGKMKALLHNKALSNVLKKLDPEKPDAILIDQFVEKNTYYK 208 Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 E + F KG+S+ LS+AAASIIA+ + M + +K Sbjct: 209 HVVKEKEIIKENVFFSTKGESVHLSVAAASIIARYAFLKQMDLLTEK 255 >gi|161777620|ref|YP_416488.2| ribonuclease HIII [Staphylococcus aureus RF122] Length = 312 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G DE G G GP+ V A + ++P G++DSKK++ K EL E++ + S+ Sbjct: 99 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 158 Query: 84 SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127 + ++ K+NI +A + A+ H AV+N L+ I S L ID + E Sbjct: 159 LTLHNE---KYNIQQAKGWTQVKMKAVLHNEAVKNVLEKIDSSQLDYIVIDQFAKREVYS 215 Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154 LP + KG+S SL+IA ASII++ Sbjct: 216 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 249 >gi|296241926|ref|YP_003649413.1| ribonuclease HII [Thermosphaera aggregans DSM 11486] gi|296094510|gb|ADG90461.1| ribonuclease HII [Thermosphaera aggregans DSM 11486] Length = 248 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 28/178 (15%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP-----FGINDSKKISHKKREELYEKITSSAI-I 81 GIDE GRG L G +VVA ++++ I DSK ++ + R E + + +S+I + Sbjct: 7 GIDEAGRGPLVGDMVVAGVMVEEKVFEELLSRISIRDSKTMTPRGRFESFLALENSSISV 66 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-------ALIDGRSIPEDLP---- 130 + S + ID+ N++ T +I ++ + S ID + + Sbjct: 67 YLDYLSPKEIDRENLNMLTAGSIVRIIQFFNTLLSSYDERLVEVYIDEVKGVKKVVEKEC 126 Query: 131 -------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 C+ + DS ++ ASIIAKV+RD + + D+G GYP+ Sbjct: 127 SKLFGKRCKLVFESQADSKYPIVSLASIIAKVSRDLSISSNTSVHGDFG----SGYPS 180 >gi|189219365|ref|YP_001940006.1| ribonuclease HIII [Methylacidiphilum infernorum V4] gi|189186223|gb|ACD83408.1| Ribonuclease HIII [Methylacidiphilum infernorum V4] Length = 323 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 4/46 (8%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKR 68 AGIDE G+G L GP+VVAA+ +D + F GI DSK+I R Sbjct: 112 AGIDECGKGDLFGPLVVAAVFVDKQSARFLVDAGIKDSKRIKSDSR 157 >gi|68469222|ref|XP_721398.1| likely Ribonuclease HII [Candida albicans SC5314] gi|68470247|ref|XP_720885.1| likely Ribonuclease HII [Candida albicans SC5314] gi|77022682|ref|XP_888785.1| hypothetical protein CaO19_6562 [Candida albicans SC5314] gi|46442777|gb|EAL02064.1| likely Ribonuclease HII [Candida albicans SC5314] gi|46443315|gb|EAL02598.1| likely Ribonuclease HII [Candida albicans SC5314] gi|76573598|dbj|BAE44682.1| hypothetical protein [Candida albicans] Length = 431 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 53/208 (25%), Positives = 90/208 (43%), Gaps = 46/208 (22%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVA-AIILDPNNI----PFGINDSKKISHKKRE 69 +++++ K V G+DE GRG + GP+V A L+ + +G DSK ++ KRE Sbjct: 144 QSILQNKTEPIVLGVDEAGRGPVLGPMVYGIAYSLESFSSKLQKEYGFADSKVLTDVKRE 203 Query: 70 ELYEKI---------------TSSAIISISSASHQYID---KHNIHKATLDAIYHAVENL 111 EL+++I T+ ISS Q ++ +N+++ D + ++ Sbjct: 204 ELFKQIEDPDHELHKHIGWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTINLIK-- 261 Query: 112 QVIPRSALIDG-----------------RSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 QV+ + I R PE K DSI ++ AS++AK Sbjct: 262 QVLAKGVKISKIFVDTVGPPVTYQAKLKRFFPE---IDVTVTKKADSIYPIVSTASVVAK 318 Query: 155 VTRDRLMRIAHKKYPDY-GFDSHVGYPT 181 VTRD ++ ++ P G GYP+ Sbjct: 319 VTRDTNIKFYNENLPLLQGQKLGSGYPS 346 >gi|256847956|ref|ZP_05553400.1| ribonuclease HIII [Lactobacillus coleohominis 101-4-CHN] gi|256715016|gb|EEU29993.1| ribonuclease HIII [Lactobacillus coleohominis 101-4-CHN] Length = 306 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 28/155 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA-- 79 V G DEVG G+ GP+ AA+ +D +++ G+ DSKK+S ++ ++I + Sbjct: 94 VLGSDEVGTGSYFGPLTTAAVFVDQDHLASLRKLGVEDSKKLSDPTIIKIAKQIMAQCPY 153 Query: 80 -IISISSASH-QYIDKHNIHKATLDAIYHAVENLQVI-------PRSALIDG-------- 122 ++++ + + I K+N +A L AI H +V+ P + LID Sbjct: 154 HVVNVKPQDYNRLIRKYN--QAQLKAICHNFVLGKVLNQIAPVQPAAILIDQFVQPSTYF 211 Query: 123 RSIPEDLPC---QAFAVIKGDSISLSIAAASIIAK 154 R + + P F KG+S L++AAASI+A+ Sbjct: 212 RYVRDQSPIIDKHVFFKEKGESYHLAVAAASIVAR 246 >gi|256811096|ref|YP_003128465.1| ribonuclease HII [Methanocaldococcus fervens AG86] gi|256794296|gb|ACV24965.1| ribonuclease HII [Methanocaldococcus fervens AG86] Length = 230 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 36/188 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKR---EELYEKI-TS 77 + GIDE GRG + GP+V+ + + + G+ DSK+++ KR ++L E S Sbjct: 3 IIGIDEAGRGPVLGPMVICGYAIKKDKEEDLKKLGVKDSKELTKNKRAYLKKLLENFGCS 62 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENL-----------QVIPRSALIDGRSIP 126 +I + + +D N+++ ++A +NL ++ + + + Sbjct: 63 EKLILEAEKINNLMDTINLNEIEINAFSEVAKNLIKKLNIKDEEVEIYLDACSTNTKKFE 122 Query: 127 EDLPCQAFAVI-------------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 D + VI K DS ++AASIIAK RD ++ K Y D G Sbjct: 123 SDFKEKIRDVIEERNLKIKIIAEHKADSKYPVVSAASIIAKAERDEIIENYKKIYGDIG- 181 Query: 174 DSHVGYPT 181 GYP+ Sbjct: 182 ---SGYPS 186 >gi|66801163|ref|XP_629507.1| ribonuclease H2 subunit A [Dictyostelium discoideum AX4] gi|74896782|sp|Q54D13|RNH2A_DICDI RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A gi|60462898|gb|EAL61095.1| ribonuclease H2 subunit A [Dictyostelium discoideum AX4] Length = 289 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 34/175 (19%) Query: 26 VAGIDEVGRGALAGPVV----VAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAI 80 V GIDE GRG + GP+V A I NDSKK++ ++R++L++K+ S+ I Sbjct: 22 VMGIDEAGRGPVMGPMVYGCCYAPISKSTTLKSMKFNDSKKLTEQQRDQLFDKMGESNKI 81 Query: 81 ISISSA--SHQYIDKHNIHKA--TLDAIYHAVENLQVIPRSALIDGRSIPEDL-----PC 131 ++ + + + + + ++K +L+ I H E+ + RS L G ++ E P Sbjct: 82 LAYETDVITAEILSEKMLYKKPISLNVISH--ESAIGLIRSVLKKGVNVQELYLDTVGPP 139 Query: 132 QAFAVI---------------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 + ++ K DS+ ++AASI AKV RD I +K + DY Sbjct: 140 DKYQLMLKKLFPEIGKIIVSKKADSLYPIVSAASIAAKVVRD--FEITNKNF-DY 191 >gi|253733626|ref|ZP_04867791.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TCH130] gi|253728326|gb|EES97055.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TCH130] Length = 318 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G DE G G GP+ V A + ++P G++DSKK++ K EL E++ + S+ Sbjct: 105 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 164 Query: 84 SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127 + + +K+NI +A + A+ H A++N L+ I S L ID + E Sbjct: 165 LTLHN---EKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYN 221 Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154 LP + KG+S SL+IA ASII++ Sbjct: 222 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 255 >gi|297208222|ref|ZP_06924652.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912299|ref|ZP_07129742.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TCH70] gi|296886961|gb|EFH25864.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886545|gb|EFK81747.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TCH70] Length = 318 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G DE G G GP+ V A + ++P G++DSKK++ K EL E++ + S+ Sbjct: 105 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 164 Query: 84 SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127 + + +K+NI +A + A+ H A++N L+ I S L ID + E Sbjct: 165 LTLHN---EKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYN 221 Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154 LP + KG+S SL+IA ASII++ Sbjct: 222 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 255 >gi|298694427|gb|ADI97649.1| probable ribonuclease HIII [Staphylococcus aureus subsp. aureus ED133] Length = 318 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G DE G G GP+ V A + ++P G++DSKK++ K EL E++ + S+ Sbjct: 105 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 164 Query: 84 SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127 + + +K+NI +A + A+ H A++N L+ I S L ID + E Sbjct: 165 LTLHN---EKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 221 Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154 LP + KG+S SL+IA ASII++ Sbjct: 222 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 255 >gi|323442368|gb|EGA99997.1| ribonuclease HIII [Staphylococcus aureus O46] Length = 318 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G DE G G GP+ V A + ++P G++DSKK++ K EL E++ + S+ Sbjct: 105 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 164 Query: 84 SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127 + + +K+NI +A + A+ H A++N L+ I S L ID + E Sbjct: 165 LTLHN---EKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 221 Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154 LP + KG+S SL+IA ASII++ Sbjct: 222 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 255 >gi|330791509|ref|XP_003283835.1| hypothetical protein DICPUDRAFT_26608 [Dictyostelium purpureum] gi|325086221|gb|EGC39614.1| hypothetical protein DICPUDRAFT_26608 [Dictyostelium purpureum] Length = 289 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 79/177 (44%), Gaps = 39/177 (22%) Query: 26 VAGIDEVGRGALAGPVVVA---AIILDPNNIP-FGINDSKKISHKKREELYEKITSSA-- 79 + GIDE GRG + GP+V A I + I NDSKK++ ++R L++K+ S Sbjct: 18 IMGIDEAGRGPVMGPLVYGCCFAPISETATISKMKFNDSKKLTEQQRNHLFQKMCDSNKI 77 Query: 80 ------IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE------ 127 +IS S + + K I +L+ I H E+ + RS L G ++ E Sbjct: 78 LGFEVDVISPEILSEKMLLKKPI---SLNVISH--ESAMGLIRSVLSKGINVQELYLDTV 132 Query: 128 DLPCQAFAVI--------------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 P A++ K DS+ ++AASI AKV RD I K + D Sbjct: 133 GTPATYQAMLKNHFPEISKIVVSKKADSLYPIVSAASICAKVIRDH--EITSKNFDD 187 >gi|317137770|ref|XP_001727941.2| ribonuclease H2 subunit A [Aspergillus oryzae RIB40] Length = 351 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 73/177 (41%), Gaps = 37/177 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKREELYE----- 73 V G+DE GRG + GP+V +A L P+++ + NDSK ++ R L Sbjct: 68 VLGVDEAGRGPVLGPMVYSAFYL-PHDLHHSLLARDYNFNDSKVLTPGVRANLMRLLCTP 126 Query: 74 ------------KITSSAIIS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 K+ S+ IS + + Y AT++ I VE +V R Sbjct: 127 GTPLFESCGWATKLLSARDISSGMMRPGAGVYNLNAQAMDATVELIREIVEGRKVDIREV 186 Query: 119 LIDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK 166 ID P P V K DS+ ++AAS+ AKVTRD + + H+ Sbjct: 187 YIDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAKVTRDVALELCHE 243 >gi|323440689|gb|EGA98399.1| ribonuclease HIII [Staphylococcus aureus O11] Length = 318 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G DE G G GP+ V A + ++P G++DSKK++ K EL E++ + S+ Sbjct: 105 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 164 Query: 84 SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127 + + +K+NI +A + A+ H A++N L+ I S L ID + E Sbjct: 165 LTLHN---EKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 221 Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154 LP + KG+S SL+IA ASII++ Sbjct: 222 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 255 >gi|282916389|ref|ZP_06324151.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus D139] gi|283770200|ref|ZP_06343092.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus H19] gi|282319829|gb|EFB50177.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus D139] gi|283460347|gb|EFC07437.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus H19] Length = 318 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G DE G G GP+ V A + ++P G++DSKK++ K EL E++ + S+ Sbjct: 105 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 164 Query: 84 SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127 + ++ K+NI +A + A+ H A++N L+ I S L ID + E Sbjct: 165 LTLHNE---KYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 221 Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154 LP + KG+S SL+IA ASII++ Sbjct: 222 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 255 >gi|239636364|ref|ZP_04677366.1| ribonuclease hiii [Staphylococcus warneri L37603] gi|239597719|gb|EEQ80214.1| ribonuclease hiii [Staphylococcus warneri L37603] Length = 309 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 24/157 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 N + G DE G G GP+ V A + +++ G++DSKK++ K EL E++ + Sbjct: 88 NQYNCIGSDEAGSGDYFGPLTVCAAYVTKDHVKILKELGVDDSKKLTDAKIVELAEQLVT 147 Query: 78 ---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-QVIPRSAL----IDG----- 122 +++++ + + + + + A+ H A+ N+ Q I AL ID Sbjct: 148 FIPHSLLTLDNVKYNERQRAGWSQVKMKAVLHNQAIANVVQKIDTHALDYIVIDQFAERG 207 Query: 123 ---RSIPEDLPC--QAFAVIKGDSISLSIAAASIIAK 154 R DLP + KG+S SL+IAAASII++ Sbjct: 208 VYQRYALSDLPFPNKTKFETKGESKSLAIAAASIISR 244 >gi|21282752|ref|NP_645840.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MW2] gi|73917853|sp|Q8NX59|RNH3_STAAW RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|21204190|dbj|BAB94888.1| MW1023 [Staphylococcus aureus subsp. aureus MW2] Length = 312 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G DE G G GP+ V A + ++P G++DSKK++ K EL E++ + S+ Sbjct: 99 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 158 Query: 84 SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127 + ++ K+NI +A + A+ H A++N L+ I S L ID + E Sbjct: 159 LTLHNE---KYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYN 215 Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154 LP + KG+S SL+IA ASII++ Sbjct: 216 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 249 >gi|253731751|ref|ZP_04865916.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724509|gb|EES93238.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 315 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G DE G G GP+ V A + ++P G++DSKK++ K EL E++ + S+ Sbjct: 105 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 164 Query: 84 SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127 + + +K+NI +A + A+ H A++N L+ I S L ID + E Sbjct: 165 LTLHN---EKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 221 Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154 LP + KG+S SL+IA ASII++ Sbjct: 222 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 255 >gi|261418289|ref|YP_003251971.1| ribonuclease HIII [Geobacillus sp. Y412MC61] gi|319767751|ref|YP_004133252.1| ribonuclease HIII [Geobacillus sp. Y412MC52] gi|261374746|gb|ACX77489.1| ribonuclease HIII [Geobacillus sp. Y412MC61] gi|317112617|gb|ADU95109.1| ribonuclease HIII [Geobacillus sp. Y412MC52] Length = 311 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 34/168 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS---AI 80 G DEVG G GP+VVAA +D ++I G+ DSK+++ + + + I + A+ Sbjct: 97 GSDEVGTGDYFGPIVVAAAYVDRSHIAKIAALGVKDSKQLNDEAIKRIAPAIMETAPYAV 156 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVI-------PRSALID------------ 121 + +A + + + + + A+ H +++ P + +ID Sbjct: 157 TVLDNAEYNRWQRSGMPQTKMKALLHNRTLAKLVDAIAPIEPEAIIIDEFLKRDSYFRYL 216 Query: 122 ---GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK-VTRDRLMRIAH 165 R I E + C + K +S+ +S+AAASIIA+ V D + R++H Sbjct: 217 SDEDRIIRERVHC----LPKAESVHVSVAAASIIARYVFLDEMERLSH 260 >gi|194246531|ref|YP_002004170.1| Ribonuclease HIII [Candidatus Phytoplasma mali] gi|254808013|sp|B3R0F3|RNH3_PHYMT RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|193806888|emb|CAP18317.1| Ribonuclease HIII [Candidatus Phytoplasma mali] Length = 288 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 22/153 (14%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS- 78 + G DEVG G + G +VV + + NIPF I DSKK++ +K +L KI + Sbjct: 76 YSAIGSDEVGTGDVFGSIVVCSSYVSAENIPFLENLNIKDSKKLTDEKIIQLVPKIINKI 135 Query: 79 --AIISISSASHQYIDKHNIHKATLDAIYH---AVENLQVIPR--SALIDGRSIPED--- 128 ++ISI+ + + + + AI H ++NL I + + ++D + ++ Sbjct: 136 TYSLISINPYKYNILTNKGFNLNKIKAILHNDMILKNLIKIKKNVNVILDKFTSSKNYFN 195 Query: 129 -------LPCQAFAVIKGDSISLSIAAASIIAK 154 + + F K + + +S+AAASIIA+ Sbjct: 196 YLKNEKKVYKKIFFCNKAEKVHISVAAASIIAR 228 >gi|156542709|ref|XP_001603515.1| PREDICTED: similar to ENSANGP00000022231 [Nasonia vitripennis] Length = 350 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 28/180 (15%) Query: 28 GIDEVGRGALAGPVV--VAAIILDPNN--IPFGINDSKKISHKKREELYEKITSSAI--- 80 G+DE GRG + GP+V +A L + G DSK ++ +KR+ +++KI + Sbjct: 82 GVDEAGRGPVLGPMVYGIAYAPLSQKKLLVDMGCADSKSLTEEKRDTIFDKICDNGDKMG 141 Query: 81 ISISSASHQYI-------DKHNIHKATLDA----IYHAVENLQVIPRSALIDGRSIPEDL 129 ++ + S YI K ++++ ++++ I A+++ V +D PE Sbjct: 142 YAVDAISPNYIANCMYRRTKTSLNEVSMNSAISLIKQAIDS-GVFVAEIYVDTVGKPEKY 200 Query: 130 PCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + + K DS ++AASI AKV+RD +R + + + GYP Sbjct: 201 QAKLEGIFPGIKIVVAKKADSTYPIVSAASICAKVSRDHALRAWQFRETENESEYGSGYP 260 >gi|316974057|gb|EFV57595.1| ribonuclease H2 subunit A [Trichinella spiralis] Length = 418 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 28/159 (17%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA---- 79 G+DE GRG + GP+V A + +N+ DSK ++ +R +++ + S Sbjct: 183 GVDEAGRGPVLGPMVYACGVCVTDNLEQLSTLKAKDSKTLTEDERSTIFKNMQSEKNSHL 242 Query: 80 -IISISSASHQYIDKHNI--HKATLDAIYH--AVENLQVIPRSALIDGRSIPEDL-PCQA 133 ++ S YI K + K L+ I H A+E +Q++ + ++ + I + + P + Sbjct: 243 FAYTMKLLSPVYISKSMLGRSKYNLNEISHDTAMELIQIVCDAGVVVDKVILDTVGPTEK 302 Query: 134 FAVI--------------KGDSISLSIAAASIIAKVTRD 158 + K DS+ ++AASI AKVTRD Sbjct: 303 YEAKLRSRFPKIDILVSKKADSLHTIVSAASICAKVTRD 341 >gi|268612465|pdb|3KIO|A Chain A, Mouse Rnase H2 Complex Length = 301 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 72/184 (39%), Gaps = 28/184 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK------- 74 V G+DE GRG + GP V A + + + DSK ++ +RE L+ K Sbjct: 30 VLGVDEAGRGPVLGPXVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKXEEDGDF 89 Query: 75 ------ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + S +IS S + +++ T + + V +D PE Sbjct: 90 VGWALDVLSPNLISTSXLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGXPET 149 Query: 129 LPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177 Q F I K DS+ ++AASI AKV RD+ ++ + D D Sbjct: 150 YQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGS 209 Query: 178 GYPT 181 GYP Sbjct: 210 GYPN 213 >gi|283470350|emb|CAQ49561.1| ribonuclease hiii [Staphylococcus aureus subsp. aureus ST398] Length = 318 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G DE G G GP+ V A + ++P G++DSKK++ K EL E++ + S+ Sbjct: 105 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 164 Query: 84 SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127 + ++ K+NI +A + A+ H A++N L+ I S L ID + E Sbjct: 165 LTLHNE---KYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 221 Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154 LP + KG+S SL+IA ASII++ Sbjct: 222 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 255 >gi|83770969|dbj|BAE61102.1| unnamed protein product [Aspergillus oryzae] Length = 363 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 73/177 (41%), Gaps = 37/177 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKREELYE----- 73 V G+DE GRG + GP+V +A L P+++ + NDSK ++ R L Sbjct: 80 VLGVDEAGRGPVLGPMVYSAFYL-PHDLHHSLLARDYNFNDSKVLTPGVRANLMRLLCTP 138 Query: 74 ------------KITSSAIIS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 K+ S+ IS + + Y AT++ I VE +V R Sbjct: 139 GTPLFESCGWATKLLSARDISSGMMRPGAGVYNLNAQAMDATVELIREIVEGRKVDIREV 198 Query: 119 LIDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK 166 ID P P V K DS+ ++AAS+ AKVTRD + + H+ Sbjct: 199 YIDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAKVTRDVALELCHE 255 >gi|184155001|ref|YP_001843341.1| ribonuclease HIII [Lactobacillus fermentum IFO 3956] gi|238692957|sp|B2GB29|RNH3_LACF3 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|183226345|dbj|BAG26861.1| ribonuclease HIII [Lactobacillus fermentum IFO 3956] Length = 301 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 16/112 (14%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 W V G DEVG G+ GP+ AA+ + + + G+ DSKK++ + L ++I ++ Sbjct: 88 WSVLGSDEVGVGSYFGPLTTAAVFVAADQVASLTQLGVADSKKLTDPEIIRLAKQIMATC 147 Query: 80 IIS----ISSASHQYIDKHNIHKATLDAIYH------AVENLQVIPRSALID 121 ++ + +A + + K+N +A L A+ H +E L P++ LID Sbjct: 148 PVTYLNLMPAAYNARMKKYN--QAQLKALCHNYVLAKTLERLATKPQAILID 197 >gi|299783000|gb|ADJ40998.1| Ribonuclease HIII (RNase HIII) [Lactobacillus fermentum CECT 5716] Length = 301 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 16/112 (14%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 W V G DEVG G+ GP+ AA+ + + + G+ DSKK++ + L ++I ++ Sbjct: 88 WSVLGSDEVGVGSYFGPLTTAAVFVAADQVASLTQLGVADSKKLTDPEIIRLAKQIMATC 147 Query: 80 IIS----ISSASHQYIDKHNIHKATLDAIYH------AVENLQVIPRSALID 121 ++ + +A + + K+N +A L A+ H +E L P++ LID Sbjct: 148 PVTYLNLMPAAYNARMKKYN--QAQLKALCHNYVLAKTLERLATKPQAILID 197 >gi|227514539|ref|ZP_03944588.1| ribonuclease H [Lactobacillus fermentum ATCC 14931] gi|260663396|ref|ZP_05864287.1| ribonuclease HIII [Lactobacillus fermentum 28-3-CHN] gi|227087096|gb|EEI22408.1| ribonuclease H [Lactobacillus fermentum ATCC 14931] gi|260552248|gb|EEX25300.1| ribonuclease HIII [Lactobacillus fermentum 28-3-CHN] Length = 301 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 16/112 (14%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 W V G DEVG G+ GP+ AA+ + + + G+ DSKK++ + L ++I ++ Sbjct: 88 WSVLGSDEVGVGSYFGPLTTAAVFVAADQVASLTQLGVADSKKLTDPEIIRLAKQIMATC 147 Query: 80 IIS----ISSASHQYIDKHNIHKATLDAIYH------AVENLQVIPRSALID 121 ++ + +A + + K+N +A L A+ H +E L P++ LID Sbjct: 148 PVTYLNLMPAAYNARMKKYN--QAQLKALCHNYVLAKTLERLATKPQAILID 197 >gi|293401505|ref|ZP_06645648.1| ribonuclease HIII [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305143|gb|EFE46389.1| ribonuclease HIII [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 300 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 41/175 (23%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKK 62 P+ PH E +P G DEVG G GP+ V + ++PF GI DSK Sbjct: 79 PQNPHTE---------WYPQCGSDEVGTGDYFGPITVCTTYVKKEDVPFLRELGIQDSKA 129 Query: 63 ISHKKREE----LYEKITSSAIISISSASHQYID--------KHNIHKATLDAIYHAVEN 110 ++ ++ E L E++T S ++ + +A + I K +H A H Sbjct: 130 VTDERIRELGPILCERLTYSLLV-LDNAKYNAIHPQYNMVAIKSRLHN---QAYVHLRRK 185 Query: 111 LQVIPRSALIDG-----------RSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 L +P +ID + E + F K ++ LS+AA SIIA+ Sbjct: 186 LGSLPSLCIIDQFVQAKSYYRYLHDVEEVVHTIHFET-KAENKYLSVAAGSIIAR 239 >gi|302332748|gb|ADL22941.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus JKD6159] Length = 312 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G DE G G GP+ V A + ++P G++DSKK++ K EL E++ + S+ Sbjct: 99 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 158 Query: 84 SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127 + ++ K+NI +A + A+ H A++N L+ I S L ID + E Sbjct: 159 LTLHNE---KYNIQQAKGWTQVKMKAVLHNEAIKNVLKKIDSSQLDYIVIDQFAKREVYS 215 Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154 LP + KG+S SL+IA ASII++ Sbjct: 216 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 249 >gi|325974872|gb|ADZ47886.1| ribonuclease H2 subunit A [Capra hircus] Length = 286 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 28/183 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK------- 74 V G+DE GRG + GP+V A + + + DSK +S +R+ L+ K Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLEDLEALKVADSKTLSESERDRLFAKMEEDGDF 89 Query: 75 ------ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + S +IS S + + + T + + V +D +PE Sbjct: 90 VGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNVAQVFVDTGGLPET 149 Query: 129 LP---CQAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177 Q F I K D++ ++AASI AKV RD+ ++ +K D D Sbjct: 150 YQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWKFVEKLQDLDTDYGS 209 Query: 178 GYP 180 GYP Sbjct: 210 GYP 212 >gi|195867864|ref|ZP_03079863.1| ribonuclease HII [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|195660441|gb|EDX53699.1| ribonuclease HII [Ureaplasma urealyticum serovar 9 str. ATCC 33175] Length = 317 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 4/59 (6%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKI 75 +N + G DEVG G L G +VV A+ L +++ F I DSKK+S + +E+YEKI Sbjct: 99 QNNQIIIGSDEVGVGDLFGGIVVCAVSLKQSDLKFLAHLNIVDSKKLSDHQMQEIYEKI 157 >gi|307188511|gb|EFN73248.1| Ribonuclease H2 subunit A [Camponotus floridanus] Length = 334 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 74/182 (40%), Gaps = 29/182 (15%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELYEKIT------ 76 G+DE GRG + GP+V I P + + G DSK ++ KKR+E+++ I Sbjct: 65 GVDEAGRGPVLGPMVYG-ISYAPLSRKQLLVDLGCADSKSLTEKKRDEIFDDICKHKDSI 123 Query: 77 -------SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 S +I+ S + + + + + V +D PE Sbjct: 124 GWAIEAISPNVIANSMYRRTKVSLNEVSMVSAIKLIQGAIEAGVNVAEIYVDTVGKPESY 183 Query: 130 PCQAFAVIKGDSISLS---------IAAASIIAKVTRDRLMRIAHKKYPD-YGFDSHVGY 179 + V G I ++ ++AASI AKV+RD +R + D G + GY Sbjct: 184 QARLKGVFPGVKIVVAKKADATYPIVSAASICAKVSRDHALRAWRFREGDSIGTEYGSGY 243 Query: 180 PT 181 PT Sbjct: 244 PT 245 >gi|303388657|ref|XP_003072562.1| ribonuclease HII [Encephalitozoon intestinalis ATCC 50506] gi|303301703|gb|ADM11202.1| ribonuclease HII [Encephalitozoon intestinalis ATCC 50506] Length = 239 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 26/175 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSSAIISIS 84 V GIDE GRG + G +V A+I + G DSK ++ +R + ++ I + Sbjct: 19 VVGIDEAGRGPVIGYMVYGALISSRTTLENTGFRDSKVLTSGQRHDFFKMIKERGFGYVY 78 Query: 85 SASH-QYIDKHNIHKAT-------------LDAIYHAVENLQVIPRSALIDGRS----IP 126 +H YI + K+T L+ I + + + AL D + Sbjct: 79 HCTHPDYITEMMQVKSTSLNEISLISVLKILEEIKAKCKKVDTVYVDALGDCEKYKARLE 138 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 E P + K DS ++ ASI+AKV RD L+ +G + GYP+ Sbjct: 139 EAYPYKFVIEEKADSKFQIVSGASIVAKVQRDILI-------SQFGSNLGSGYPS 186 >gi|171920922|ref|ZP_02932071.1| ribonuclease HII [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178980|ref|ZP_02964735.1| ribonuclease HII [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188023994|ref|ZP_02996755.1| ribonuclease HII [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518241|ref|ZP_03003771.1| ribonuclease HII [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524398|ref|ZP_03004424.1| ribonuclease HII [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198273849|ref|ZP_03206383.1| ribonuclease HII [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554110|ref|YP_002284833.1| ribonuclease HIII [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550434|ref|ZP_03771383.1| ribonuclease HII [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551445|ref|ZP_03772391.1| ribonuclease HII [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903150|gb|EDT49439.1| ribonuclease HII [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209262|gb|EDU06305.1| ribonuclease HII [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019019|gb|EDU57059.1| ribonuclease HII [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998110|gb|EDU67207.1| ribonuclease HII [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659944|gb|EDX53324.1| ribonuclease HII [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198249604|gb|EDY74386.1| ribonuclease HII [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541611|gb|ACI59840.1| ribonuclease HIII [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379260|gb|EEH01625.1| ribonuclease HII [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379588|gb|EEH01950.1| ribonuclease HII [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 317 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 4/59 (6%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKI 75 +N + G DEVG G L G +VV A+ L +++ F I DSKK+S + +E+YEKI Sbjct: 99 QNNQIIIGSDEVGVGDLFGGIVVCAVSLKQSDLKFLAHLNIVDSKKLSDHQMQEIYEKI 157 >gi|49483303|ref|YP_040527.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MRSA252] gi|257425191|ref|ZP_05601617.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 55/2053] gi|257427854|ref|ZP_05604252.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 65-1322] gi|257430489|ref|ZP_05606871.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 68-397] gi|257433251|ref|ZP_05609609.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus E1410] gi|257436090|ref|ZP_05612137.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M876] gi|282903688|ref|ZP_06311576.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C160] gi|282905457|ref|ZP_06313312.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus Btn1260] gi|282913915|ref|ZP_06321702.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M899] gi|282918838|ref|ZP_06326573.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C427] gi|282923960|ref|ZP_06331636.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C101] gi|283957883|ref|ZP_06375334.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus A017934/97] gi|293500950|ref|ZP_06666801.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 58-424] gi|293509907|ref|ZP_06668616.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M809] gi|293526494|ref|ZP_06671179.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M1015] gi|73917851|sp|Q6GHU5|RNH3_STAAR RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|49241432|emb|CAG40116.1| putative ribonuclease [Staphylococcus aureus subsp. aureus MRSA252] gi|257272167|gb|EEV04299.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 55/2053] gi|257274695|gb|EEV06182.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 65-1322] gi|257278617|gb|EEV09236.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 68-397] gi|257281344|gb|EEV11481.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus E1410] gi|257284372|gb|EEV14492.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M876] gi|282313932|gb|EFB44324.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C101] gi|282316648|gb|EFB47022.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C427] gi|282321983|gb|EFB52307.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M899] gi|282330749|gb|EFB60263.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus Btn1260] gi|282595306|gb|EFC00270.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C160] gi|283790032|gb|EFC28849.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus A017934/97] gi|290920566|gb|EFD97629.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M1015] gi|291095955|gb|EFE26216.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 58-424] gi|291467357|gb|EFF09874.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M809] gi|315193810|gb|EFU24205.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus CGS00] Length = 312 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G DE G G GP+ V A + ++P G++DSKK++ K EL E++ + S+ Sbjct: 99 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 158 Query: 84 SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127 + ++ K+NI +A + A+ H A++N L+ I S L ID + E Sbjct: 159 LTLHNE---KYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 215 Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154 LP + KG+S SL+IA ASII++ Sbjct: 216 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 249 >gi|242010277|ref|XP_002425895.1| ribonuclease hi large subunit, putative [Pediculus humanus corporis] gi|212509871|gb|EEB13157.1| ribonuclease hi large subunit, putative [Pediculus humanus corporis] Length = 271 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 43/210 (20%) Query: 1 MFCNSIPERPHFELEAMVREKNMWP-VAGIDEVGRGALAGPVVVAAIILDPNNI----PF 55 +F ++IPE+ E P + G+DE GRG + GP+V + N+ Sbjct: 33 LFNSNIPEKCFLE-----------PCILGVDEAGRGPVLGPMVYSVFFCSINDADILKDI 81 Query: 56 GINDSKKISHKKREELYEKITSSA--------IISISSASHQYID--KHNIHKATLDAIY 105 G DSK ++ KKRE++++ I + ++S + S++ + K+++++ ++ Sbjct: 82 GCTDSKVLTEKKREDIFDLINQNNDKLGWAVDLLSPNLISNRMLQRKKYSLNEIAQNSTI 141 Query: 106 HAVENL---QVIPRSALIDG--------RSIPEDLPCQAFAV-IKGDSISLSIAAASIIA 153 +E+L + + +D + + P V K D + + AASI A Sbjct: 142 KLIESLLEKNITLKDIFVDTIGPADKYQEKLSKLFPNSKVTVKSKADLLYPVVGAASICA 201 Query: 154 KVTRDRLMRIAHKKYPD-YGFDSH--VGYP 180 KV RD + K+P+ D+ GYP Sbjct: 202 KVIRD--TAVQQWKFPEKITIDAEFGTGYP 229 >gi|331244484|ref|XP_003334882.1| ribonuclease HI large subunit [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309313872|gb|EFP90463.1| ribonuclease HI large subunit [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 143 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 7/68 (10%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-----DPNNIPFGINDSKKISHKK 67 E E ++ N W + GIDE GRG + GP+V A + + G DSK ++H++ Sbjct: 41 EEEEQLKRDN-W-IMGIDEAGRGPVLGPMVYGAAFCTQAFAEDKLLDLGFADSKTLTHRR 98 Query: 68 REELYEKI 75 REEL E I Sbjct: 99 REELLEMI 106 >gi|15790853|ref|NP_280677.1| ribonuclease HII [Halobacterium sp. NRC-1] gi|169236599|ref|YP_001689799.1| ribonuclease HII [Halobacterium salinarum R1] gi|74568991|sp|Q9HNR3|RNH2_HALSA RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043604|sp|B0R6T4|RNH2_HALS3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|10581416|gb|AAG20157.1| RNAase H [Halobacterium sp. NRC-1] gi|167727665|emb|CAP14453.1| ribonuclease HII [Halobacterium salinarum R1] Length = 212 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 72/144 (50%), Gaps = 13/144 (9%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87 G+DE G+G + G + AA+ DP +P G+ DSK++S +R EL +++ +S + ++ Sbjct: 5 GVDEAGKGPVLGSMFAAAVAGDPAAVPDGVADSKRLSADRRAELDDRVRASMRVGVAEVP 64 Query: 88 HQYID--KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ID + +++ T+ A A+ + + +D + E + A ++++ Sbjct: 65 VDRIDDPETDMNTLTVAAQADALGRVVADGMAGYVDAGDVNEQRFGRRVANRVAADVAVT 124 Query: 146 -----------IAAASIIAKVTRD 158 +AAASI+AKV RD Sbjct: 125 AEHGADDEYDLVAAASIVAKVARD 148 >gi|84370099|ref|NP_001033623.1| ribonuclease H2 subunit A [Bos taurus] gi|110816412|sp|Q2TBT5|RNH2A_BOVIN RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|83638655|gb|AAI09683.1| Ribonuclease H2, subunit A [Bos taurus] gi|296485915|gb|DAA28030.1| ribonuclease H2 subunit A [Bos taurus] Length = 299 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 28/183 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK------- 74 V G+DE GRG + GP+V A + + + DSK +S +R+ L+ K Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLEDLEALKVADSKTLSESERDRLFAKMEEDGDF 89 Query: 75 ------ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + S +IS S + + + T + + V +D +PE Sbjct: 90 VGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNVAQVFVDTVGLPET 149 Query: 129 LP---CQAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177 Q F I K D++ ++AASI AKV RD+ ++ +K D D Sbjct: 150 YQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWKFVEKLQDLDTDYGS 209 Query: 178 GYP 180 GYP Sbjct: 210 GYP 212 >gi|282910715|ref|ZP_06318518.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus WBG10049] gi|295427627|ref|ZP_06820259.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591419|ref|ZP_06950057.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MN8] gi|282325320|gb|EFB55629.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus WBG10049] gi|295127985|gb|EFG57619.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576305|gb|EFH95021.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MN8] gi|312438484|gb|ADQ77555.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TCH60] Length = 329 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 30/154 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G DE G G GP+ V A + ++P G++DSKK++ K EL E++ + S+ Sbjct: 116 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 175 Query: 84 SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127 + ++ K+NI +A + A+ H A++N L+ I S L ID + E Sbjct: 176 LTLHNE---KYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 232 Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154 LP + KG+S SL+IA ASII++ Sbjct: 233 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 266 >gi|309778053|ref|ZP_07672993.1| ribonuclease HIII [Erysipelotrichaceae bacterium 3_1_53] gi|308914190|gb|EFP59990.1| ribonuclease HIII [Erysipelotrichaceae bacterium 3_1_53] Length = 299 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 32/161 (19%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKIS----HKKREELY 72 K ++P AG DEVG G GPV V A + ++ F GI DSK I + +L Sbjct: 86 KEIYPQAGSDEVGTGDYFGPVTVCATYVTAQDVEFLREQGIQDSKAIDDTAIRRMAPKLI 145 Query: 73 EKITSSAIISISSASHQYIDKHNIHKATL-----DAIYHAVENLQVIPRSALIDG----- 122 E++ S +I + +A++ I N A A H + L +P +ID Sbjct: 146 ERLPHSLLI-LDNATYNRIHGENNMVAIKSRMHNQAYVHLRKKLGALPEFCIIDQFVQKS 204 Query: 123 ---------RSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 R + D+ + K ++ LS+AA SIIA+ Sbjct: 205 SYYRYLQKERDVVYDIHFET----KAENKYLSVAAGSIIAR 241 >gi|294155370|ref|YP_003559754.1| ribonuclease HII [Mycoplasma crocodyli MP145] gi|291599873|gb|ADE19369.1| ribonuclease HII [Mycoplasma crocodyli MP145] Length = 246 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 39/189 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKR-EELYEKITSSA- 79 + G+DE G G GP++ AA+++ I + G+ DSKKI+ R +L +I S Sbjct: 30 IIGVDETGVGDYFGPLISAAVLVSDKQIEYLKSIGVKDSKKITSDSRIIDLANQIKSKCL 89 Query: 80 --IISISSASHQYIDK--HNIHKATLDAIYHAVENLQVI--PRSALIDGRSIPEDLPCQA 133 + ++S+A + +++ N +K H + +L+ + R + D I + A Sbjct: 90 YKVYTLSNAGYNRVEQTYRNSNKLKFFTHAHVINSLEELLESRGSEYDYVFIDQYTTKNA 149 Query: 134 FAVI------------------------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 F K +SI +S+AAASI+A R L+ K Sbjct: 150 FIEYFNNMIYINNWSSIKVFKKPILLSHKAESIHISVAAASILA---RAELLENMKKMKA 206 Query: 170 DYGFDSHVG 178 Y FD +G Sbjct: 207 KYNFDFKLG 215 >gi|13357958|ref|NP_078232.1| ribonuclease HII [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170761950|ref|YP_001752480.1| ribonuclease HIII [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|183508540|ref|ZP_02958062.1| ribonuclease HIII [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|11387109|sp|Q9PQ93|RNH3_UREPA RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|189043679|sp|B1AJ36|RNH3_UREP2 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|11357021|pir||C82896 ribonuclease HII UU397 [imported] - Ureaplasma urealyticum gi|6899383|gb|AAF30807.1|AE002137_6 ribonuclease HII [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827527|gb|ACA32789.1| ribonuclease HIII [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|182675978|gb|EDT87883.1| ribonuclease HIII [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 316 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 34/172 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + G DEVG G L G +VV A+ L ++ I DSKK++ ++ +E+Y++I + Sbjct: 103 IIGSDEVGVGDLFGGIVVCAVSLKKSDFKKINHLKIIDSKKLNDQQMQEIYQQIKNQISY 162 Query: 82 SISSAS----HQYIDKHN-----------------IHKATLDAIYHAVENLQVIPRSALI 120 +I S + ++ I ++N IHK +I+ V+ S+L Sbjct: 163 TIVSYNPKEYNELIKEYNNAHILKTILHYKALQSEIHKHAKYSIFSVVD-----AFSSLK 217 Query: 121 DGRSIPEDLPCQAFA----VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 + + + Q + + K +SI S+A ASIIA+V +++ I +++ Sbjct: 218 NWNQYLQKVNFQPYEPNLLIPKAESIYTSVALASIIARVMFLKMIAIIEEQF 269 >gi|171920172|ref|ZP_02931561.1| ribonuclease HIII [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186701730|ref|ZP_02971421.1| ribonuclease HIII [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|171902547|gb|EDT48836.1| ribonuclease HIII [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186700997|gb|EDU19279.1| ribonuclease HIII [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 316 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 34/172 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + G DEVG G L G +VV A+ L ++ I DSKK++ ++ +E+Y++I + Sbjct: 103 IIGSDEVGVGDLFGGIVVCAVSLKKSDFKKINHLKIIDSKKLNDQQMQEIYQQIKNQISY 162 Query: 82 SISSAS----HQYIDKHN-----------------IHKATLDAIYHAVENLQVIPRSALI 120 +I S + ++ I ++N IHK +I+ V+ S+L Sbjct: 163 TIVSYNPKEYNELIKEYNNAHILKTILHYKALQSEIHKHAKYSIFSVVD-----AFSSLK 217 Query: 121 DGRSIPEDLPCQAFA----VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 + + + Q + + K +SI S+A ASIIA+V +++ I +++ Sbjct: 218 NWNQYLQKVNFQPYEPNLLIPKAESIYTSVALASIIARVMFLKMIAIIEEQF 269 >gi|119496273|ref|XP_001264910.1| ribonuclease HI large subunit [Neosartorya fischeri NRRL 181] gi|119413072|gb|EAW23013.1| ribonuclease HI large subunit [Neosartorya fischeri NRRL 181] Length = 363 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 73/177 (41%), Gaps = 37/177 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKREELYE----- 73 V G+DE GRG + GP+V +A + P+ + + NDSK ++ R L Sbjct: 78 VLGVDEAGRGPVLGPMVYSAFYI-PHTLHHSLLARDYSFNDSKVLTPGVRANLMRLLCTA 136 Query: 74 ------------KITSSAIIS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 K+ S+ IS + AS Y AT++ I VE +V R Sbjct: 137 GNPLHASCGWATKVLSARDISAGMMRPASGAYNLNAQAMDATVEIIRGIVEERRVDIREV 196 Query: 119 LIDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK 166 ID P P V K D++ ++AAS++AKVTRD + H+ Sbjct: 197 YIDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAKVTRDVALEFCHE 253 >gi|67537888|ref|XP_662718.1| hypothetical protein AN5114.2 [Aspergillus nidulans FGSC A4] gi|40743105|gb|EAA62295.1| hypothetical protein AN5114.2 [Aspergillus nidulans FGSC A4] gi|259484559|tpe|CBF80886.1| TPA: ribonuclease HI large subunit (AFU_orthologue; AFUA_1G07600) [Aspergillus nidulans FGSC A4] Length = 339 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 37/177 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKREELYE----- 73 + GIDE GRG + GP+V +A L P+++ + NDSK ++ R L Sbjct: 64 ILGIDEAGRGPVLGPMVYSAFYL-PSSLHHSLLSEEYSFNDSKVLTAGVRANLMRILCTQ 122 Query: 74 ------------KITSSAIIS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 K+ S+ IS + A+ Y AT++ I VE ++ R Sbjct: 123 GSPLHESCGWATKLLSARDISSGMMRPAAGVYNLNAQAMDATIELIRGVVEERKLNVREV 182 Query: 119 LIDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK 166 ID P P V K DS+ ++AAS++AKVTRD + + ++ Sbjct: 183 YIDTIGNPASYQKKLEMVFPSLRITVAKKADSLYPCVSAASVVAKVTRDVALDVCYE 239 >gi|284048370|ref|YP_003398709.1| ribonuclease HIII [Acidaminococcus fermentans DSM 20731] gi|283952591|gb|ADB47394.1| ribonuclease HIII [Acidaminococcus fermentans DSM 20731] Length = 317 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 53/206 (25%), Positives = 92/206 (44%), Gaps = 35/206 (16%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS 77 +W G DE G+G GP+ VAA+ LD +GI DSK ++ K L EKI Sbjct: 106 GLW--CGSDESGKGDYFGPLAVAAVCLDLAAARQYAAWGICDSKALTDGKIRLLAEKIRQ 163 Query: 78 SA------IISISSASHQYID----KHNIHKATLDAIYHAVEN-LQVIP--RSALID--- 121 +A ++ + +Y K N++ HA+ +Q +P R AL+D Sbjct: 164 TARAHTVLVLKPRFYNQRYAQLKARKQNLNHLLASGHIHALGRVIQQVPECRFALVDQFT 223 Query: 122 -----GRSIPEDLP-CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 ++ P + + KG++ +++AAASI+A RD + + + GF Sbjct: 224 RHNAIASTLETGFPGLKVYQQPKGEA-DMAVAAASILA---RDAFVEVMDQLSAQAGFPL 279 Query: 176 HVG---YPTAKHQQVIKEKGPSCIHR 198 G TA +++++E+G + + Sbjct: 280 PKGGGDQATAAARKLVREQGKDALEQ 305 >gi|91772495|ref|YP_565187.1| ribonuclease HII [Methanococcoides burtonii DSM 6242] gi|121691891|sp|Q12YN9|RNH2_METBU RecName: Full=Ribonuclease HII; Short=RNase HII gi|91711510|gb|ABE51437.1| Ribonuclease HII [Methanococcoides burtonii DSM 6242] Length = 213 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 27/180 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI- 80 + GIDE G+G + GP+ + + +D + G+ DSKK+S K+R L +I A Sbjct: 3 IIGIDEAGKGPVIGPMCIGGVRIDEDKSNALKNLGVADSKKLSPKRRVHLAAQIKKYADG 62 Query: 81 ISISSASHQYIDK-------HNIHKATLDAIYHAVENLQVIPRSALID----GRSI---- 125 + S ID+ ++I ++ + + ++ +A + G+ + Sbjct: 63 WFVYEVSPNQIDELRKLMSMNDIMVLAFGSVIEELPSDKIYADAADVKEERFGKRLFDNY 122 Query: 126 ----PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 P+ P + + D + ++AASI+AKV RD L+ K D G D GYP+ Sbjct: 123 MEKHPDVSPPEVISKHGADDLFPVVSAASILAKVRRDELI---EKIKVDMGVDIGSGYPS 179 >gi|322799751|gb|EFZ20956.1| hypothetical protein SINV_11176 [Solenopsis invicta] Length = 353 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 73/183 (39%), Gaps = 31/183 (16%) Query: 28 GIDEVGRGALAGPVVV----AAIILDPNNIPFGINDSKKISHKKREELYEKIT------- 76 G+DE GRG + GP+V A + + G DSK ++ KKR+E+++ I Sbjct: 84 GVDEAGRGPVLGPMVYGISYAPLSQKQLLVDLGCADSKSLTEKKRDEIFDDICERKENIG 143 Query: 77 ------SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 S IIS S + + + + + V +D PE Sbjct: 144 WAIEAISPNIISNSMYRRTKVSLNEVSMISATNLIQGAIEAGVNVAEIYVDTVGKPESYQ 203 Query: 131 CQAFAVIKGDSISLS---------IAAASIIAKVTRD---RLMRIAHKKYPDYGFDSHVG 178 + V G I ++ ++AASI AKVTRD R R + + + S G Sbjct: 204 ARLKGVFPGIKIVVAKKADATYPIVSAASICAKVTRDHAIRAWRFREGENIETQYGS--G 261 Query: 179 YPT 181 YPT Sbjct: 262 YPT 264 >gi|91091718|ref|XP_966789.1| PREDICTED: similar to ribonuclease hi large subunit [Tribolium castaneum] gi|270001067|gb|EEZ97514.1| hypothetical protein TcasGA2_TC011359 [Tribolium castaneum] Length = 306 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 33/166 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAII--LDPNNIP--FGINDSKKISHKKREELYEKITSS--- 78 + GIDE GRG + GP+V L+ +P G DSK ++ + R+ ++ KI ++ Sbjct: 39 ILGIDEAGRGPVLGPMVYGTAFCPLNEATLPDSLGCADSKALNEESRDVIFSKICANRKM 98 Query: 79 ----AIISISSASHQYI--DKHNIHKATLDAIYHAVE-------NLQVIPRSALIDGRSI 125 +I+ +S + + K+++++ ++DA + ++ NL + +D Sbjct: 99 GWGVEVIAPNSICNSMLSRQKYSLNQVSMDAAINLIKMALKGGVNLSHV----YVDTVGP 154 Query: 126 PED--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMR 162 PE P V K DS ++AASI AKVTRD ++ Sbjct: 155 PEKYQAYLKSLFPNVGVTVAKKADSTFPIVSAASICAKVTRDYALK 200 >gi|291533380|emb|CBL06493.1| Ribonuclease HII [Megamonas hypermegale ART12/1] Length = 101 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/40 (52%), Positives = 26/40 (65%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN 51 + E R +AG+DEVGRG LAGPVVVA++IL N Sbjct: 56 YTFENECRANGYKLIAGVDEVGRGPLAGPVVVASVILPEN 95 >gi|121534428|ref|ZP_01666251.1| ribonuclease HIII [Thermosinus carboxydivorans Nor1] gi|121306921|gb|EAX47840.1| ribonuclease HIII [Thermosinus carboxydivorans Nor1] Length = 306 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 93/208 (44%), Gaps = 41/208 (19%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77 N W G DE G+G GP+V+AA+++D G+ DSK +S +K + L ++I Sbjct: 94 NRW--IGSDESGKGDFFGPLVIAAVMVDAATAAALTASGVRDSKLLSDEKAKVLAQRIRE 151 Query: 78 -----SAIISISSASHQYI------DKHNIHKATLDAIYHAVENLQVIPRS----ALIDG 122 A++ I+ A + + + N++ L A HA +V+ R+ AL+D Sbjct: 152 ICHGRFALVEITPAKYNVLYQRFRAEGKNLNH--LLAWAHASAIEEVLTRTPCRFALVDK 209 Query: 123 RSIPEDLPCQAFAVIKGDSISL----------SIAAASIIAKVTRDRLMRIAHKKYPDYG 172 + + + FA KG I+L ++AAASI+A R+R + Y Sbjct: 210 FADESLIRSRLFA--KGREITLVQAPRAEKNIAVAAASILA---RERFLYWIELFRVQYK 264 Query: 173 FDSHVGYPTA---KHQQVIKEKGPSCIH 197 D G A + ++ G +C+H Sbjct: 265 MDFPKGASAAVTDAARAFVQRYGKNCLH 292 >gi|49115760|gb|AAH73515.1| LOC443655 protein [Xenopus laevis] Length = 305 Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 78/183 (42%), Gaps = 30/183 (16%) Query: 28 GIDEVGRGALAGPVVVA----AIILDPNNIPFGINDSKKISHKKREELYEKITSSA---- 79 GIDE GRG + GP+V + + + DSK +S RE L+EK+ S+ Sbjct: 35 GIDEAGRGPVLGPMVYGICYCPVARKKDLQDSKVADSKTLSEADRERLFEKLNGSSDYIG 94 Query: 80 ----IIS--ISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPEDLP 130 I+S I S S Q K+N++ + D ++ + V +D E Sbjct: 95 WALHILSPNIISTSMQQRAKYNLNALSHDTAIGLIQFALDAGVQLTEVFVDTVGPAEKYQ 154 Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG---FDSHVG 178 + + K DS+ ++AASI AKV RDR+++ K D G D G Sbjct: 155 EKLKKIFPELDVTVRPKADSLFPVVSAASICAKVARDRVVK-DWKFVEDLGELDADYGSG 213 Query: 179 YPT 181 YP Sbjct: 214 YPN 216 >gi|39939117|ref|NP_950883.1| ribonuclease HII family 2 [Onion yellows phytoplasma OY-M] gi|39722226|dbj|BAD04716.1| ribonuclease HII Family 2 [Onion yellows phytoplasma OY-M] Length = 330 Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 25/156 (16%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHKKREELYEKITSS 78 P G DEVG G + GPV+V + L NI F I +SKKIS +K +L I Sbjct: 117 LPSIGSDEVGTGDVFGPVIVCCVYLTAKNIVFLQKLGTIAESKKISDEKIMQLAPLIMKE 176 Query: 79 AIISISSAS----HQYIDKHNIHK--------ATLDAIYHAVENLQVI------PRSAL- 119 I S+ +Q I + N++K A + A N+ VI P++ Sbjct: 177 VIYSVKIMMPLEYNQTIKQCNLNKIKALMHNEAIKQTVLKASPNVPVILDQFCFPKNYFN 236 Query: 120 -IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 + + ++ + K DS S+A AS+IA+ Sbjct: 237 YLQDQKAQNEIYTKIIFETKADSSYFSVAVASVIAR 272 >gi|294501477|ref|YP_003565177.1| ribonuclease HIII [Bacillus megaterium QM B1551] gi|294351414|gb|ADE71743.1| ribonuclease HIII [Bacillus megaterium QM B1551] Length = 304 Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 25/167 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS---S 78 V G DEVG G GP+ V A + +P G+ DSK+++ K E+ +++ S Sbjct: 89 VIGSDEVGTGDYFGPMTVVAAYVQKEQLPLLKELGVRDSKELTDAKIIEIAKQLVSFIPY 148 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVEN-LQVI----PRSALIDGR-------- 123 +++ + + + + + + + A+ H A+ N L+ + P + LID Sbjct: 149 SLLVLHNEKYNAFQEKGMSQGKMKALLHNKALSNVLKKLDPEKPDAILIDQFVEKNTYYK 208 Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 E + F KG+S+ LS+AAASIIA+ + M + +K Sbjct: 209 HVVKEKEIIKENVFFSTKGESVHLSVAAASIIARYAFLKQMDLLTEK 255 >gi|163782002|ref|ZP_02177001.1| hypothetical protein HG1285_17754 [Hydrogenivirga sp. 128-5-R1-1] gi|159882534|gb|EDP76039.1| hypothetical protein HG1285_17754 [Hydrogenivirga sp. 128-5-R1-1] Length = 272 Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 18/145 (12%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISH----KKREELYEKIT 76 P+AG DEVG+G L GP+V+ +++P N + DSK + K+ E+L + + Sbjct: 79 PLAGCDEVGKGDLFGPLVLCCAVVNPENFKKVLSLSPKDSKSMKDDELLKRAEKLKKYVN 138 Query: 77 SSAIISISSASHQ-YIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIPEDLPCQA 133 I+ + ++ Y + NI++ DA V+++ P +ID S P Q Sbjct: 139 RRCIVLMPERFNELYREYGNINRLMDDAYRKLVQSIVRDFRPVRVVIDRYSFRN--PFQD 196 Query: 134 FAVI----KGDSISLSIAAASIIAK 154 V+ KG+ + ++ AS++A+ Sbjct: 197 MGVVDFLEKGER-DVVVSVASMLAR 220 >gi|301171214|ref|NP_001180335.1| ribonuclease H2, subunit A [Xenopus laevis] gi|71051192|gb|AAH99334.1| Unknown (protein for MGC:116529) [Xenopus laevis] Length = 302 Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 30/183 (16%) Query: 28 GIDEVGRGALAGPVVVA----AIILDPNNIPFGINDSKKISHKKREELYEKITSSA---- 79 GIDE GRG + GP+V + + + DSK +S RE L+EK+ S+ Sbjct: 32 GIDEAGRGPVLGPMVYGICYCPVARKKDLQDSKVADSKTLSEADRERLFEKLNGSSDYIG 91 Query: 80 ----IIS--ISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPEDLP 130 I+S + S S Q K+N++ + D ++ + V +D E Sbjct: 92 WALHILSPNVISTSMQQRAKYNLNALSHDTAIGLIQFALDAGVQLTEVFVDTVGPAEKYQ 151 Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG---FDSHVG 178 + + K DS+ ++AASI AKV RDR+++ K D G D G Sbjct: 152 EKLKKIFPELDVTVRPKADSLFPVVSAASICAKVARDRVVK-DWKFVEDLGELDADYGSG 210 Query: 179 YPT 181 YP Sbjct: 211 YPN 213 >gi|70991314|ref|XP_750506.1| ribonuclease HI large subunit [Aspergillus fumigatus Af293] gi|66848138|gb|EAL88468.1| ribonuclease HI large subunit [Aspergillus fumigatus Af293] Length = 363 Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 72/177 (40%), Gaps = 37/177 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKREELYE----- 73 V G+DE GRG + GP+V +A + P+ + + NDSK ++ R L Sbjct: 78 VLGVDEAGRGPVLGPMVYSAFYI-PHTLHHSLLARDYSFNDSKVLTPGVRANLMRLLCTA 136 Query: 74 ------------KITSSAIIS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 K+ S+ IS + S Y AT++ I VE +V R Sbjct: 137 GNPLHASCGWATKVLSARDISAGMMRPTSGAYNLNAQAMDATVEIIRGIVEERRVDIREV 196 Query: 119 LIDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK 166 ID P P V K D++ ++AAS++AKVTRD + H+ Sbjct: 197 YIDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAKVTRDMALEFCHE 253 >gi|159130978|gb|EDP56091.1| ribonuclease HI large subunit [Aspergillus fumigatus A1163] Length = 363 Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 72/177 (40%), Gaps = 37/177 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKREELYE----- 73 V G+DE GRG + GP+V +A + P+ + + NDSK ++ R L Sbjct: 78 VLGVDEAGRGPVLGPMVYSAFYI-PHTLHHSLLARDYSFNDSKVLTPGVRANLMRLLCTA 136 Query: 74 ------------KITSSAIIS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 K+ S+ IS + S Y AT++ I VE +V R Sbjct: 137 GNPLHASCGWATKVLSARDISAGMMRPTSGAYNLNAQAMDATVEIIRGIVEERRVDIREV 196 Query: 119 LIDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK 166 ID P P V K D++ ++AAS++AKVTRD + H+ Sbjct: 197 YIDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAKVTRDMALEFCHE 253 >gi|161509314|ref|YP_001574973.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|282919917|ref|ZP_06327646.1| ribonuclease HIII [Staphylococcus aureus A9765] gi|304381303|ref|ZP_07363956.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|160368123|gb|ABX29094.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|282594633|gb|EFB99617.1| ribonuclease HIII [Staphylococcus aureus A9765] gi|304340286|gb|EFM06227.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|320141045|gb|EFW32892.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MRSA131] gi|320143102|gb|EFW34892.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MRSA177] gi|329313808|gb|AEB88221.1| Ribonuclease HIII [Staphylococcus aureus subsp. aureus T0131] gi|329728888|gb|EGG65309.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 21193] gi|329730784|gb|EGG67163.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 21189] Length = 318 Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 30/154 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G DE G G GP+ V A + ++P G++DSKK++ K EL E++ + S+ Sbjct: 105 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 164 Query: 84 SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127 + + +K+NI +A + A H A++N L+ I S L ID + E Sbjct: 165 LTLHN---EKYNIQQAKGWTQVKMKAALHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 221 Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154 LP + KG+S SL+IA ASII++ Sbjct: 222 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 255 >gi|255731726|ref|XP_002550787.1| ribonuclease HI 35 large subunit [Candida tropicalis MYA-3404] gi|240131796|gb|EER31355.1| ribonuclease HI 35 large subunit [Candida tropicalis MYA-3404] Length = 356 Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 70/173 (40%), Gaps = 41/173 (23%) Query: 26 VAGIDEVGRGALAGPVVVAAI-----ILDPNNIPFGINDSKKISHKKREELYEKI----- 75 V G+DE GRG + GP+V D +G DSK ++ KREEL+ I Sbjct: 79 VLGVDEAGRGPVLGPMVYGVAYALESFSDGLQKKYGFADSKVLTESKREELFRLIEESSD 138 Query: 76 -------------TSSAIISISSASHQYIDK--HNIHKATLDAIYHAVENLQVIPRSA-- 118 TS ISS Q K +N++ D + ++ QV+ + Sbjct: 139 NEKGLSKVIGWATTSMTARDISSGMLQSSGKGAYNLNSQAHDVTINLIK--QVLKKGVKI 196 Query: 119 ---LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDR 159 +D P + + K DSI ++AAS++AKVTRD+ Sbjct: 197 SKIFVDTVGPPATYQAKLKGIFPDIEITVAKKADSIYPIVSAASVVAKVTRDK 249 >gi|258423817|ref|ZP_05686703.1| ribonuclease HIII [Staphylococcus aureus A9635] gi|257846049|gb|EEV70077.1| ribonuclease HIII [Staphylococcus aureus A9635] Length = 318 Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 30/154 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G DE G G GP+ V A + ++P G++DSKK++ K +L E++ + S+ Sbjct: 105 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVDLAEQLVTFIPHSL 164 Query: 84 SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127 + ++ K+NI +A + A+ H A++N L+ I S L ID + E Sbjct: 165 LTLHNE---KYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 221 Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154 LP + KG+S SL+IA ASII++ Sbjct: 222 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 255 >gi|145605665|ref|XP_370462.2| hypothetical protein MGG_06959 [Magnaporthe oryzae 70-15] gi|145013464|gb|EDJ98105.1| hypothetical protein MGG_06959 [Magnaporthe oryzae 70-15] Length = 312 Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 19/150 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD-PNNIPF-----GINDSKKISHKKREELYEKITSSA 79 V G+DE GRG + GP+V L P + P +DSK ++ R L E + + Sbjct: 57 VLGVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRETHHFDDSKVLTPAVRSSLMESLCTPT 116 Query: 80 IISISSASHQYIDKH-NIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + + + + +D+ N+ + +D + + + R P V K Sbjct: 117 LSQSAGSLNSVMDRGVNVAEIYVDTVGPPAAYQKKLERF-----------FPTAKVTVSK 165 Query: 139 -GDSISLSIAAASIIAKVTRDRLMRIAHKK 167 DS+ ++AAS+ AKVTRD + + +K Sbjct: 166 KADSLYPCVSAASVCAKVTRDAALEVLYKN 195 >gi|49485978|ref|YP_043199.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MSSA476] gi|73917852|sp|Q6GA74|RNH3_STAAS RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|49244421|emb|CAG42849.1| putative ribonuclease [Staphylococcus aureus subsp. aureus MSSA476] Length = 312 Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 30/154 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G DE G G GP+ V A + ++P G++DSKK++ K EL +++ + S+ Sbjct: 99 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELADQLVTFIPHSL 158 Query: 84 SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127 + ++ K+NI +A + A+ H A++N L+ I S L ID + E Sbjct: 159 LTLHNE---KYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYN 215 Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154 LP + KG+S SL+IA ASII++ Sbjct: 216 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 249 >gi|94991140|ref|YP_599240.1| ribonuclease HIII [Streptococcus pyogenes MGAS10270] gi|166226675|sp|Q1JF63|RNH3_STRPD RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|94544648|gb|ABF34696.1| Ribonuclease HIII [Streptococcus pyogenes MGAS10270] Length = 300 Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 4/51 (7%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREEL 71 P+ G DEVG G+ G + V A +DP + PF G++DSKK+S K +++ Sbjct: 84 PIIGSDEVGNGSYFGGIAVVASFVDPKDHPFLKKLGVDDSKKLSDKTIQQI 134 >gi|296111199|ref|YP_003621580.1| ribonuclease HIII [Leuconostoc kimchii IMSNU 11154] gi|295832730|gb|ADG40611.1| ribonuclease HIII [Leuconostoc kimchii IMSNU 11154] Length = 307 Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 30/160 (18%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS- 78 W V G DEVG GA GP+ AA+ + ++ + GI DSK ++ K ++ +I + Sbjct: 93 WSVLGSDEVGAGAYFGPLTTAAVFVSQRDLKWVRQLGIADSKTLTDDKMRQIAPEIIARL 152 Query: 79 ---AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI-------PRSALIDG------ 122 + + +Q +N+++ L AI H +V+ P LID Sbjct: 153 PHHVVNLMPEKYNQLQPTNNVNQ--LKAISHNFVLGKVLEKIDPTRPDGILIDQFAQEST 210 Query: 123 ------RSIPEDLPCQ-AFAVIKGDSISLSIAAASIIAKV 155 R+ + + Q + KG+ LS+AAASI+A+V Sbjct: 211 YFNYLQRAKQQHIIRQNVYFTTKGEQYHLSVAAASILARV 250 >gi|71904214|ref|YP_281017.1| ribonuclease HIII [Streptococcus pyogenes MGAS6180] gi|123639303|sp|Q48RJ8|RNH3_STRPM RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|71803309|gb|AAX72662.1| ribonuclease HIII [Streptococcus pyogenes MGAS6180] Length = 300 Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 4/51 (7%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREEL 71 P+ G DEVG G+ G + V A +DP + PF G++DSKK+S K +++ Sbjct: 84 PIIGSDEVGNGSYFGGIAVVASFVDPKDHPFLKKLGVDDSKKLSDKTIQQI 134 >gi|194213064|ref|XP_001495257.2| PREDICTED: similar to Ribonuclease H2 subunit A (RNase H2 subunit A) (Ribonuclease HI subunit A) (Ribonuclease HI large subunit) (RNase HI large subunit) (RNase H(35)) (Aicardi-Goutieres syndrome 4 protein) (AGS4) [Equus caballus] Length = 299 Score = 43.9 bits (102), Expect = 0.015, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 74/181 (40%), Gaps = 28/181 (15%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK--------- 74 G+DE GRG + GP+V A + + + DSK +S +R+ L+ + Sbjct: 32 GVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFARMKEDGDFVG 91 Query: 75 ----ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + S +IS S + +++ T + + V +D +PE Sbjct: 92 WALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLVQYALDQGVKVAQVFVDTVGMPETYQ 151 Query: 131 ---CQAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHVGY 179 Q F I K DS+ ++AASI AKV RD+ ++ +K D D GY Sbjct: 152 QRLQQRFPGIEVTVKAKADSLYPVVSAASICAKVARDQAVKNWKFVEKLQDSDTDYGSGY 211 Query: 180 P 180 P Sbjct: 212 P 212 >gi|314936680|ref|ZP_07844027.1| ribonuclease HIII [Staphylococcus hominis subsp. hominis C80] gi|313655299|gb|EFS19044.1| ribonuclease HIII [Staphylococcus hominis subsp. hominis C80] Length = 308 Score = 43.9 bits (102), Expect = 0.015, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 34/156 (21%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS---SAI 80 G DE G G GP+ V A + +I G++DSKK++ K EL E++ + ++ Sbjct: 93 GSDEAGSGDYFGPLTVCAAYVSKEHIDILRTLGVDDSKKLTDTKIIELAEQLITFIPHSL 152 Query: 81 ISISSASHQYIDKHNIHKATLDAIYH--AVENL--------------------QVIPRSA 118 +++++ + + + A+ H A++N+ V R A Sbjct: 153 LTLNNTKYNERQALGWSQVKMKAVLHNEAIKNVTNKIDTKALDYIVIDQFAERNVYKRYA 212 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 L D +P P Q KG+S SL+IAAASII++ Sbjct: 213 LSD---LP--FPNQTKFETKGESKSLAIAAASIISR 243 >gi|228476267|ref|ZP_04060969.1| ribonuclease hiii [Staphylococcus hominis SK119] gi|228269670|gb|EEK11172.1| ribonuclease hiii [Staphylococcus hominis SK119] Length = 308 Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 34/156 (21%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS---SAI 80 G DE G G GP+ V A + +I G++DSKK++ K EL E++ + ++ Sbjct: 93 GSDEAGSGDYFGPLTVCAAYVSKEHIDILRTLGVDDSKKLTDTKIIELAEQLITFIPHSL 152 Query: 81 ISISSASHQYIDKHNIHKATLDAIYH--AVENL--------------------QVIPRSA 118 +++++ + + + A+ H A++N+ V R A Sbjct: 153 LTLNNTKYNERQALGWSQVKMKAVLHNEAIKNVTNKIDTKALDYIVIDQFAERNVYKRYA 212 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 L D +P P Q KG+S SL+IAAASII++ Sbjct: 213 LSD---LP--FPNQTKFETKGESKSLAIAAASIISR 243 >gi|301771221|ref|XP_002921051.1| PREDICTED: ribonuclease H2 subunit A-like [Ailuropoda melanoleuca] gi|281353030|gb|EFB28614.1| hypothetical protein PANDA_009861 [Ailuropoda melanoleuca] Length = 299 Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 28/194 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK------- 74 V G+DE GRG + GP+V A + + + DSK +S +R+ L+ K Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFVKMEEDGDF 89 Query: 75 ------ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + S +IS S + +++ T + + V +D PE Sbjct: 90 VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGPPET 149 Query: 129 --------LPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177 P V K D++ ++AASI AKV RD+ ++ H + D D Sbjct: 150 YQERLQERFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWHFVETLQDLDADYGS 209 Query: 178 GYPTAKHQQVIKEK 191 GYP +V K Sbjct: 210 GYPNDPKTKVWLRK 223 >gi|269940634|emb|CBI49013.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TW20] Length = 318 Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 30/154 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G DE G G GP+ V A + ++P G++DSKK++ K EL E++ + S+ Sbjct: 105 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 164 Query: 84 SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127 + + +K+NI +A + A H A++N L+ I S L ID + E Sbjct: 165 LTLHN---EKYNIQQAKGWTQVKMKAALHNEAIKNVLKKIDSSQLDYIVIDQFAKREVYS 221 Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154 LP + KG+S SL+IA ASII++ Sbjct: 222 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 255 >gi|251810588|ref|ZP_04825061.1| ribonuclease HIII [Staphylococcus epidermidis BCM-HMP0060] gi|282876412|ref|ZP_06285279.1| ribonuclease HIII [Staphylococcus epidermidis SK135] gi|251805748|gb|EES58405.1| ribonuclease HIII [Staphylococcus epidermidis BCM-HMP0060] gi|281295437|gb|EFA87964.1| ribonuclease HIII [Staphylococcus epidermidis SK135] Length = 308 Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 28/159 (17%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 N + G DE G G GP+ V A + ++I G++DSKK+S K +L E++ + Sbjct: 86 NRFHCIGSDEAGSGDYFGPLTVCAAYVSQSHIKILKELGVDDSKKLSDTKIVDLAEQLIT 145 Query: 78 ---SAIISISSASHQYIDKHNI--HKATLDAIYH--AVEN-LQVIPRSAL----IDGRSI 125 +++++ + +Y ++ +I + + A+ H A++N LQ I + L ID + Sbjct: 146 FIPHSLLTLDNV--KYNERQSIGWSQVKMKAVLHNEAIKNVLQKIEQDQLDYIVIDQFAK 203 Query: 126 PEDLPCQAFAVI----------KGDSISLSIAAASIIAK 154 E A + + KG+S SL+IAAASII++ Sbjct: 204 REVYQHYALSALPFPDKTKFETKGESKSLAIAAASIISR 242 >gi|57651749|ref|YP_186013.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus COL] gi|87161110|ref|YP_493737.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194841|ref|YP_499639.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221263|ref|YP_001332085.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus str. Newman] gi|221140462|ref|ZP_03564955.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258451837|ref|ZP_05699858.1| ribonuclease HIII [Staphylococcus aureus A5948] gi|262051696|ref|ZP_06023915.1| ribonuclease HIII [Staphylococcus aureus 930918-3] gi|284024065|ref|ZP_06378463.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 132] gi|294848130|ref|ZP_06788877.1| ribonuclease HIII [Staphylococcus aureus A9754] gi|73917848|sp|Q5HGU4|RNH3_STAAC RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|122539781|sp|Q2FZD7|RNH3_STAA8 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|123486345|sp|Q2FHU1|RNH3_STAA3 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|172048827|sp|A6QG41|RNH3_STAAE RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|57285935|gb|AAW38029.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus COL] gi|87127084|gb|ABD21598.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202399|gb|ABD30209.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374063|dbj|BAF67323.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus str. Newman] gi|257860445|gb|EEV83272.1| ribonuclease HIII [Staphylococcus aureus A5948] gi|259160431|gb|EEW45456.1| ribonuclease HIII [Staphylococcus aureus 930918-3] gi|294824930|gb|EFG41352.1| ribonuclease HIII [Staphylococcus aureus A9754] gi|302750963|gb|ADL65140.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus str. JKD6008] gi|315196863|gb|EFU27206.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus CGS01] Length = 312 Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 30/154 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G DE G G GP+ V A + ++P G++DSKK++ K EL E++ + S+ Sbjct: 99 GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSL 158 Query: 84 SSASHQYIDKHNIHKA------TLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE--- 127 + ++ K+NI +A + A H A++N L+ I S L ID + E Sbjct: 159 LTLHNE---KYNIQQAKGWTQVKMKAALHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYS 215 Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAK 154 LP + KG+S SL+IA ASII++ Sbjct: 216 HYALSDIPLPKKTKFETKGESKSLAIAVASIISR 249 >gi|156082533|ref|XP_001608751.1| ribonuclease H [Babesia bovis T2Bo] gi|154796000|gb|EDO05183.1| ribonuclease H, putative [Babesia bovis] Length = 264 Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 34/184 (18%) Query: 28 GIDEVGRGALAGPVVVAAII---------LDPNNIPFGINDSKKISHKKREELYEKITS- 77 GIDE GRG + GP+V + + + +NI G++DSKK++ R+ + + Sbjct: 6 GIDEAGRGPVLGPMVYGSFVCPIGDEYRRMLKDNI--GVDDSKKLTASLRDSKFRALNGP 63 Query: 78 -------SAIISISSASHQYIDK--HNIHKATLDAI-----YHAVENLQVIPRSALIDGR 123 + +I+ S++ + + +N++ + D+ Y+ + + G Sbjct: 64 ETPFAMCAEVITPRYISYKMLQREAYNLNNISHDSAIALIRYYISQGFNITEVYVDAVGP 123 Query: 124 SIP-EDLPCQAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + E + Q F I K DSI ++AASI+AKV RD ++ K P+ D Sbjct: 124 AAKYEAMLTQLFPKIKCVVANKADSIFPVVSAASIVAKVIRDNIIDSWFKDSPE-RVDVG 182 Query: 177 VGYP 180 GYP Sbjct: 183 SGYP 186 >gi|223043745|ref|ZP_03613788.1| ribonuclease hiii [Staphylococcus capitis SK14] gi|222442842|gb|EEE48944.1| ribonuclease hiii [Staphylococcus capitis SK14] Length = 310 Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 24/157 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 N + G DE G G GP+ V A + N G++DSKK++ K EL E++ + Sbjct: 89 NKYNCIGSDEAGSGDYFGPLTVCAAYVSEKNAQVLKTLGVDDSKKLTDDKIVELAEQLIT 148 Query: 78 ---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-QVIPRSAL----IDGRSIPE 127 +++++++ + K + + A+ H A++N+ Q I L ID + E Sbjct: 149 FIPHSLLTLNNVKYNERQKMGWSQVKMKAVLHNEAIKNVVQKIDVDHLDYIVIDQFAKRE 208 Query: 128 ----------DLPCQAFAVIKGDSISLSIAAASIIAK 154 P + KG+S SL+IAAASII++ Sbjct: 209 VYQHYALSELPFPKKTQFETKGESKSLAIAAASIISR 245 >gi|145238902|ref|XP_001392098.1| ribonuclease H2 subunit A [Aspergillus niger CBS 513.88] gi|134076599|emb|CAK45152.1| unnamed protein product [Aspergillus niger] Length = 352 Score = 43.5 bits (101), Expect = 0.019, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 37/177 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKREELYE----- 73 + G+DE GRG + GP+V +A L P ++ + NDSK ++ R L + Sbjct: 68 ILGVDEAGRGPVLGPMVYSAFYL-PQDLHHTLLTRDYSFNDSKALTPGVRANLMKLLCTP 126 Query: 74 ------------KITSSAIIS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 K+ S+ IS + + Y AT++ I +E+ + R Sbjct: 127 GNPLHESCGWAVKLLSARDISSGMMRPGTGAYNLNAQAMDATIELIRGIIEDRNMDVREV 186 Query: 119 LIDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK 166 ID P P V K DS+ ++AAS+ AKVTRD + + H+ Sbjct: 187 YIDTIGNPATYQQKLEKIFPSLRITVAKKADSLYPCVSAASVAAKVTRDVALDLCHQ 243 >gi|330685731|gb|EGG97367.1| ribonuclease HIII [Staphylococcus epidermidis VCU121] Length = 259 Score = 43.5 bits (101), Expect = 0.019, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 34/162 (20%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 N + G DE G G GP+ V A + +++ G++DSKK++ K EL E++ + Sbjct: 90 NQYNCIGSDEAGSGDYFGPLTVCAAYVTKDHVKILKELGVDDSKKLTDAKIVELAEQLVT 149 Query: 78 ---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL--------------------Q 112 +++++ + + + + + A+ H A+ N+ Sbjct: 150 FIPHSLLTLDNVKYNERQRAGWSQVKMKAVLHNQAIANVVQKIDAPSLDYIVIDQFAERG 209 Query: 113 VIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 V R AL D +P P + KG+S SL+IAAASII++ Sbjct: 210 VYQRYALSD---LP--FPNKTKFETKGESKSLAIAAASIISR 246 >gi|84489361|ref|YP_447593.1| putative ribonuclease HIII [Methanosphaera stadtmanae DSM 3091] gi|84372680|gb|ABC56950.1| putative ribonuclease HIII [Methanosphaera stadtmanae DSM 3091] Length = 309 Score = 43.5 bits (101), Expect = 0.019, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKI 75 + G DE G+G GP+VV A+ ++I G+ DSKK+S K+ LYEKI Sbjct: 112 IIGSDETGKGEWYGPLVVCAVCTSNDDILKLKSIGVKDSKKLSTKEIFSLYEKI 165 >gi|121702279|ref|XP_001269404.1| ribonuclease HI large subunit [Aspergillus clavatus NRRL 1] gi|119397547|gb|EAW07978.1| ribonuclease HI large subunit [Aspergillus clavatus NRRL 1] Length = 362 Score = 43.5 bits (101), Expect = 0.020, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 72/179 (40%), Gaps = 37/179 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKREELYE----- 73 V G+DE GRG + GP+V +A L P+ + + +DSK ++ R L Sbjct: 79 VLGVDEAGRGPVLGPMVYSAFYL-PHTLHHSLLARDYSFDDSKVLTAGVRANLMRLLCTA 137 Query: 74 ------------KITSSAIIS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 K+ S+ IS + S Y AT++ I VE +V R Sbjct: 138 GNPLHASCGWATKLLSARDISSGMMRPGSGVYNLNAQAMDATVEIIRGIVEERKVDVREV 197 Query: 119 LIDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 ID P P V K DS+ ++AAS+ AKVTRD + + H + Sbjct: 198 YIDTIGNPATYQQKLERIFPTLKITVAKKADSLYPCVSAASVAAKVTRDVALELCHDAF 256 >gi|257870169|ref|ZP_05649822.1| ribonuclease HIII [Enterococcus gallinarum EG2] gi|257804333|gb|EEV33155.1| ribonuclease HIII [Enterococcus gallinarum EG2] Length = 311 Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 24/158 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREEL---YEK 74 + W V G DEVG G+ GP+VV A+ + +P G+ DSK ++ + + +K Sbjct: 91 SQWSVVGSDEVGNGSYFGPLVVCAVYASKDQLPALKALGVKDSKMLTDPQIRAMAPKIKK 150 Query: 75 ITSSAIISISSASHQYID-KHNIHKATLDAIYHAVE-NLQVI----PRSALIDG------ 122 + ++++ + I K+N + + A+ LQ I P + LID Sbjct: 151 LVPYQLLTVEPTKYNEIQPKYNTVRMKVALHNQAIRLLLQKIAPKTPDAILIDQFTSEKN 210 Query: 123 -----RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKV 155 +S + + F KG+ L++AAASI+ + Sbjct: 211 YRTYLKSEKNQITEKLFFATKGEQYHLAVAAASILCRT 248 >gi|283769498|ref|ZP_06342394.1| ribonuclease HIII [Bulleidia extructa W1219] gi|283103766|gb|EFC05152.1| ribonuclease HIII [Bulleidia extructa W1219] Length = 281 Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 73/178 (41%), Gaps = 26/178 (14%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS 78 ++P AG DEVG G GPVVV A + N + +GI DSK +S K ++ + + + Sbjct: 69 LYPQAGSDEVGTGDYFGPVVVCASYVCENQLDLLRSYGITDSKAMSDKDIQKAAKSLQNQ 128 Query: 79 AIISISSAS-HQYIDKH-----NIHKATL-DAIYHAVENLQVIPRSALIDGRSI------ 125 I S S Y D H N KA L + Y A+ +P ++D + Sbjct: 129 FTHVIFSLSPKAYNDLHRRYNMNATKALLHNQAYLALSKRVDLPEICMVDQFTAEKNYFS 188 Query: 126 -----PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 PE F K +S S+A AS+ A R+R + Y F G Sbjct: 189 YLAYEPEIFHRLQFET-KAESRYASVALASVFA---RNRFLEEWSYMEEKYNFHFQKG 242 >gi|328774049|gb|EGF84086.1| hypothetical protein BATDEDRAFT_8789 [Batrachochytrium dendrobatidis JAM81] Length = 290 Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 34/187 (18%) Query: 26 VAGIDEVGRGALAGPVVVA---AIILDPNNIP-FGINDSKKISHKKREELY---EKITSS 78 + G+DE GRG + GP+V A +I + + G DSK ++ +R++L+ EK + Sbjct: 63 ILGVDEAGRGPVLGPMVYAVCYTLISHQDKLKDIGFADSKVLNETQRDKLFATIEKQSEW 122 Query: 79 AIISISSASHQYIDKHNIHKA--TLDAIYH--------AVENLQVIPRSALIDGRSIPED 128 + + S Q I + + +A L+A+ H +V + V + +D PE Sbjct: 123 IGWAATVCSPQDISESMLRRAKYNLNALAHDTTINLIQSVLDQGVNIQEVYVDTVGSPES 182 Query: 129 LPCQA---FAVI-------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH-- 176 + F I K DS+ ++AASI AKVTRD ++ + ++ + G DS Sbjct: 183 YQAKLAKRFPKIGKIVVSKKADSLFPIVSAASICAKVTRDAIL--CNWEFVEPGIDSTQR 240 Query: 177 ---VGYP 180 GYP Sbjct: 241 AFGSGYP 247 >gi|226287752|gb|EEH43265.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb18] Length = 343 Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 72/176 (40%), Gaps = 35/176 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG------INDSKKISHKKREELYE------ 73 V G+DE GRG + GP+V +A L + +DSK ++ R L Sbjct: 58 VLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTPAVRTNLMRLLCTPD 117 Query: 74 -----------KITSSAIIS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 K+ S+ IS + S + Y AT++ I VE + V + Sbjct: 118 HSLNTSCGWGVKVMSARDISTGMLRSGTGNYNLNAQAMDATIELIICIVEKMGVNVKEVY 177 Query: 120 IDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK 166 ID PE P V K DS+ S++AAS+ AKVTRD + + ++ Sbjct: 178 IDTVGNPETYQKKLKRIFPALKITVTKKADSLYPSVSAASVCAKVTRDVALELCYE 233 >gi|52081363|ref|YP_080154.1| ribonuclease HIII [Bacillus licheniformis ATCC 14580] gi|52786740|ref|YP_092569.1| ribonuclease HIII [Bacillus licheniformis ATCC 14580] gi|319647270|ref|ZP_08001492.1| ribonuclease HIII [Bacillus sp. BT1B_CT2] gi|73917844|sp|Q65GD8|RNH3_BACLD RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|52004574|gb|AAU24516.1| ribonuclease HIII [Bacillus licheniformis ATCC 14580] gi|52349242|gb|AAU41876.1| RnhC [Bacillus licheniformis ATCC 14580] gi|317390617|gb|EFV71422.1| ribonuclease HIII [Bacillus sp. BT1B_CT2] Length = 313 Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust. Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 24/155 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS--- 78 V G DEVG G GP+ VA + D +P G+ DSK + + ++ + + Sbjct: 98 VIGSDEVGTGDYFGPITVACVYADKAKLPLLKELGVKDSKNLKDPQIVQIARDLIKTVPY 157 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSIP----- 126 +++ + + + + + + + + A+ H A+ NL P + LID + P Sbjct: 158 SLLVLRNEKYNEMQEKGMSQGKMKALLHNQAIGNLLKKLDGTRPEAILIDQFAEPAVYFK 217 Query: 127 -----EDLPCQAFAVIKGDSISLSIAAASIIAKVT 156 + + + K + I LS+AAASIIA+ + Sbjct: 218 HLAGKTAVKERTYFSTKAEGIHLSVAAASIIARYS 252 >gi|225684872|gb|EEH23156.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb03] Length = 343 Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 72/176 (40%), Gaps = 35/176 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG------INDSKKISHKKREELYE------ 73 V G+DE GRG + GP+V +A L + +DSK ++ R L Sbjct: 58 VLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTPAVRTNLMRLLCTPD 117 Query: 74 -----------KITSSAIIS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 K+ S+ IS + S + Y AT++ I VE + V + Sbjct: 118 HSLNTSCGWGVKVMSARDISTGMLRSGTGNYNLNAQAMDATIELIICIVEKMGVNVKEVY 177 Query: 120 IDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK 166 ID PE P V K DS+ S++AAS+ AKVTRD + + ++ Sbjct: 178 IDTVGNPETYQKKLKRIFPALKITVTKKADSLYPSVSAASVCAKVTRDVALELCYE 233 >gi|145479147|ref|XP_001425596.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124392667|emb|CAK58198.1| unnamed protein product [Paramecium tetraurelia] Length = 297 Score = 43.1 bits (100), Expect = 0.025, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 46/195 (23%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN------DSKKISHKKREELYEKITS 77 W + GIDE GRG + GP++ A+ P I+ DSK+I+ R++L++ +T Sbjct: 32 WQL-GIDEAGRGPVLGPMLYASCYW-PTKYHKLISETCKFVDSKQINEAARDKLFDVLTQ 89 Query: 78 --SAIISISS--ASHQYIDKHNIHKAT--LDAIYH--AVENLQVIPRSALIDGRSIPEDL 129 +++ + + +Y+ K+ + T L+ I H A E +Q SA+ G I E Sbjct: 90 LKGKVLTFETRELTAEYLSKNQLAHLTINLNDISHNTAAELIQ----SAIQKGYKITEIF 145 Query: 130 -----PCQAFAVI------------------KGDSISLSIAAASIIAKVTRD-RLMRIAH 165 P Q + K DS +++AASI AKVTRD R+ I Sbjct: 146 VDTVGPKQTYKNFLQGKLQEIGKEANIVVEEKADSKYANVSAASICAKVTRDYRITLIQQ 205 Query: 166 KKYPDYGFDSHVGYP 180 + P+ S GYP Sbjct: 206 EILPNDSIGS--GYP 218 >gi|15668305|ref|NP_247101.1| ribonuclease HII [Methanocaldococcus jannaschii DSM 2661] gi|2495822|sp|Q57599|RNH2_METJA RecName: Full=Ribonuclease HII; Short=RNase HII gi|1590900|gb|AAB98116.1| ribonuclease HII (rnhB) [Methanocaldococcus jannaschii DSM 2661] Length = 230 Score = 43.1 bits (100), Expect = 0.027, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 36/188 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG + GP+VV A + + G+ DSK+++ KR L + + + + Sbjct: 3 IIGIDEAGRGPVLGPMVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYLKKLLENLGYV 62 Query: 82 S--ISSAS--HQYIDKHNIHKATLDAIYHAVENL-----------QVIPRSALIDGRSIP 126 I A +Q ++ N++ ++A +NL ++ + + + Sbjct: 63 EKRILEAEEINQLMNSINLNDIEINAFSKVAKNLIEKLNIRDDEIEIYIDACSTNTKKFE 122 Query: 127 EDLPCQAFAVIKGDSISLSI-------------AAASIIAKVTRDRLMRIAHKKYPDYGF 173 + + +IK ++++ I +AASIIAK RD ++ K Y D G Sbjct: 123 DSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAKAERDEIIDYYKKIYGDIG- 181 Query: 174 DSHVGYPT 181 GYP+ Sbjct: 182 ---SGYPS 186 >gi|213404976|ref|XP_002173260.1| ribonuclease H2 subunit A [Schizosaccharomyces japonicus yFS275] gi|212001307|gb|EEB06967.1| ribonuclease H2 subunit A [Schizosaccharomyces japonicus yFS275] Length = 321 Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 33/164 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI---PFGINDSKKISHKKREELYEKIT------ 76 V G+DE GRG + GP+V A+ P + +G DSK+++ +KR +L + + Sbjct: 61 VLGVDEAGRGPVLGPMVY-AVAFCPTELKLSEYGFADSKQLTAEKRTQLLQAVCDRNNPA 119 Query: 77 ------SSAIIS---ISSASHQYIDKHNIH-----------KATLDAIYHAVE-NLQVIP 115 ++ +++ IS + +DK+N++ ++ L A Y+ E + + Sbjct: 120 STSIGWATTVMTARDISRGMLRRVDKYNLNAQAHDSTIALIQSVLKAGYNISEIYVDTVG 179 Query: 116 RSALIDGRSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRD 158 A+ + + P V K DS+ ++ ASI AKVTRD Sbjct: 180 PPAVYQAK-LQNRFPQAKVTVTKKADSLFPIVSLASICAKVTRD 222 >gi|197294741|ref|YP_001799282.1| Ribonuclease HII family protein [Candidatus Phytoplasma australiense] gi|171854068|emb|CAM12041.1| Ribonuclease HII family protein [Candidatus Phytoplasma australiense] Length = 301 Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 34/155 (21%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHKKREE----LYEKITSS 78 G DEVG G + GP++V ++ + P NI F +++SK++ K + + +K+ + Sbjct: 90 GSDEVGTGDVFGPIIVCSVYIPPQNITFFQKKIFLSESKQMLDKNIIQTVPLIMDKVIKT 149 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR-------------------SAL 119 + S ++ I +N++K + A+ H + LQ + + + L Sbjct: 150 IVTLKPSKYNKLIVNNNLNK--IKALMHNLSILQTVEKINKAVPVILDQFCLPKLYFNYL 207 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 D S+ + + Q K DS LS+A AS+IA+ Sbjct: 208 KDETSVYQKINFQT----KADSNYLSVAVASLIAR 238 >gi|70726822|ref|YP_253736.1| ribonuclease HIII [Staphylococcus haemolyticus JCSC1435] gi|123659928|sp|Q4L5E5|RNH3_STAHJ RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|68447546|dbj|BAE05130.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 310 Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 35/179 (19%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 N + G DE G G GP+ V A + N+ G++DSKK++ +K EL E++ + Sbjct: 89 NHYNCIGSDEAGSGDYFGPLTVCAAYVSKENVKILKTLGVDDSKKLNDQKIIELAEQLIT 148 Query: 78 SAIISISSASH-QYIDKHNI------HKATL--DAIYHAVENLQ---------------- 112 S+ + + +Y D+ I KA L +AI + + + Sbjct: 149 FIPHSLLTLDNPKYNDRQAIGWSQVKMKAELHNEAIKNVTQKINCNELNYIVIDQFAVRG 208 Query: 113 VIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM-RIAHKKYPD 170 V R AL S+P P + KG+S SL+IAAASII++ + M I+HK D Sbjct: 209 VYQRYAL---SSLP--YPEKTKFETKGESKSLAIAAASIISRYAFVKHMDHISHKMKQD 262 >gi|295399299|ref|ZP_06809281.1| ribonuclease HIII [Geobacillus thermoglucosidasius C56-YS93] gi|294978765|gb|EFG54361.1| ribonuclease HIII [Geobacillus thermoglucosidasius C56-YS93] Length = 306 Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 42/161 (26%) Query: 25 PVAGIDEVGRGALAGPVVVAAIIL---DPNN--IPFGINDSKKISH-------------- 65 P G DE G+G GP+V A+ +L D N I G+ DSKKIS+ Sbjct: 97 PRIGTDESGKGDFFGPLVTASFLLQSKDAENKLIAIGVTDSKKISNKQIIALASEIKKIG 156 Query: 66 ---------KKREELYEKITS-SAIISISSAS--HQYIDKHNIHKATLDAIYHAVENLQV 113 KK ELY KI + + ++ S A + K+N A D ++ Sbjct: 157 PYSIVKIGPKKYNELYAKIGNLNNLLGWSHARAIENILTKYNCSVAVADQFGDE----KI 212 Query: 114 IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 I S L +G+ I + + KG++ +++AAASI+A+ Sbjct: 213 IKNSLLKNGKEI------KLYQFHKGEN-DIAVAAASILAR 246 >gi|313901027|ref|ZP_07834515.1| ribonuclease HIII [Clostridium sp. HGF2] gi|312953985|gb|EFR35665.1| ribonuclease HIII [Clostridium sp. HGF2] Length = 300 Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 32/161 (19%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKIS----HKKREELY 72 K ++P AG DEVG G GPV V A + ++ F GI DSK I + +L Sbjct: 87 KAIYPQAGSDEVGTGDYFGPVTVCATCVRHEDVEFLRSLGIQDSKAIDDTAIRRMAPKLM 146 Query: 73 EKITSSAIISISSASHQYIDKHNIHKATL-----DAIYHAVENLQVIPRSALIDG----- 122 E++ S +I + +A++ I N A A H + + +P+ +ID Sbjct: 147 ERLPHSLLI-LDNATYNRIHGENNMVAIKSRMHNQAYVHLRKKMGSLPQFCIIDQFVQKT 205 Query: 123 ---------RSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 R + D+ + K ++ LS+AA SIIA+ Sbjct: 206 SYYRYLKHEREVVYDIHFET----KAENKYLSVAAGSIIAR 242 >gi|157364353|ref|YP_001471120.1| ribonuclease HII/HIII [Thermotoga lettingae TMO] gi|157314957|gb|ABV34056.1| ribonuclease HII/HIII [Thermotoga lettingae TMO] Length = 305 Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 70/154 (45%), Gaps = 28/154 (18%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKIT 76 KN+ P G DEVG+G + GPVVV A+ + I DSK I+ +K E+ +KI Sbjct: 97 KNILPAIGSDEVGKGDVFGPVVVTAVYIGCKEYVALKDVDIKDSKSINDRKILEISKKIK 156 Query: 77 SSAIISISSASHQYIDKHNIHKATL------DAIYHAVENLQVIPRSALI---------- 120 + +I + +++ I+ L DAI +E RS+LI Sbjct: 157 NICPHAIVVFEPERLNEKKINMNRLLEQMHIDAISRVLE-----KRSSLIAVYDDFGAKK 211 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 D E L F K +L++AAASI+++ Sbjct: 212 DRMRSVEQLTLIGF---KNGERNLAVAAASIVSR 242 >gi|296810182|ref|XP_002845429.1| ribonuclease H2 subunit A [Arthroderma otae CBS 113480] gi|238842817|gb|EEQ32479.1| ribonuclease H2 subunit A [Arthroderma otae CBS 113480] Length = 342 Score = 42.7 bits (99), Expect = 0.032, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 23/163 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-------NDSKKISHKKREELYEKITSS 78 V GIDE GRG + GP+V +A L P ++ + +DS + + + K+ S+ Sbjct: 68 VLGIDEAGRGPVLGPMVYSAFYL-PMHLHKSLLAEEHHFDDSHSLHNSCGWAV--KVMSA 124 Query: 79 AIISISSASHQYIDKHNIHKATLDA----IYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 IS +N++ LDA I VE ++ + +D PE + Sbjct: 125 RDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQRIDVKEVYVDTIGKPETHQARLL 184 Query: 135 AVIKG---------DSISLSIAAASIIAKVTRDRLMRIAHKKY 168 V G DS+ S++AAS+ AKVTRD + + + Sbjct: 185 RVFPGLKITVAKKADSLYPSVSAASVCAKVTRDAALEACYDNW 227 >gi|260781395|ref|XP_002585798.1| hypothetical protein BRAFLDRAFT_233701 [Branchiostoma floridae] gi|229270848|gb|EEN41809.1| hypothetical protein BRAFLDRAFT_233701 [Branchiostoma floridae] Length = 301 Score = 42.7 bits (99), Expect = 0.034, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 26/161 (16%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA---- 79 GIDE GRG + GP+V + G DSK ++ ++RE+L+E I + Sbjct: 32 GIDEAGRGPVLGPMVYGICYCPLSGQDRLKDMGFADSKTLTEEQREKLFEAIAGAGEFMG 91 Query: 80 ----IISISSASHQYI--DKHNIHKATLDAIYHAVE-------NLQVIPRSALIDGRSIP 126 I++ ++ S+ + K+N++ + D ++ NLQ + + D Sbjct: 92 WTIHILAPNAISNCMLRRSKYNLNTLSHDTAIGLIQRTLDSGVNLQEVYVDTVGDATKYQ 151 Query: 127 EDL----PCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMR 162 + L P V K D+ ++AASI AKV RDR ++ Sbjct: 152 DKLKGIFPDLDITVTPKADAKFPIVSAASICAKVARDRAVK 192 >gi|313633654|gb|EFS00411.1| ribonuclease hiii [Listeria seeligeri FSL N1-067] Length = 296 Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 25/154 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78 V G DEVG G GP+ V A ++ +P G+ DSK + + + EKI Sbjct: 81 VLGSDEVGTGDFFGPITVCAAYVEETIMPLLKELGVKDSKAMKDPEICRIAEKIMPVVPH 140 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVEN-LQVI----PRSALIDGRS------- 124 +++ + + + +++ + A+ H A+EN L+ I P + LID + Sbjct: 141 SVLLCPNPKYNEMQSRGMNQGQMKALLHNRALENVLKKIAPTKPEAILIDQFAEKNTYYR 200 Query: 125 ----IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 P + F K + + LS+AAASIIA+ Sbjct: 201 YLAKEPTIIRENVFFATKAEGLHLSVAAASIIAR 234 >gi|260794677|ref|XP_002592334.1| hypothetical protein BRAFLDRAFT_285333 [Branchiostoma floridae] gi|229277552|gb|EEN48345.1| hypothetical protein BRAFLDRAFT_285333 [Branchiostoma floridae] Length = 303 Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 26/161 (16%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA---- 79 GIDE GRG + GP+V + G DSK ++ ++RE+L+E I + Sbjct: 32 GIDEAGRGPVLGPMVYGICYCPLSGQDRLKDMGFADSKTLTEEQREKLFEAIAGAGEFMG 91 Query: 80 ----IISISSASHQYI--DKHNIHKATLDAIYHAVE-------NLQVIPRSALIDGRSIP 126 I++ ++ S+ + K+N++ + D ++ NLQ + + D Sbjct: 92 WTIHILAPNAISNCMLRRSKYNLNTLSHDTAIGLIQRTLDSGVNLQEVYVDTVGDATKYQ 151 Query: 127 EDL----PCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMR 162 + L P V K D+ ++AASI AKV RDR ++ Sbjct: 152 DKLKGIFPDLDITVTPKADAKFPIVSAASICAKVARDRAVK 192 >gi|170290760|ref|YP_001737576.1| ribonuclease HII/HIII [Candidatus Korarchaeum cryptofilum OPF8] gi|170174840|gb|ACB07893.1| ribonuclease HII/HIII [Candidatus Korarchaeum cryptofilum OPF8] Length = 167 Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 42/157 (26%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAIISI 83 G DE G+G GP+VVAA+ LD F G+ +SK + K+ EEL + I + Sbjct: 9 GSDEAGKGEREGPIVVAAVALDGEGRKFLRARGLLESKSVPKKRIEEL-----AGLIREV 63 Query: 84 SSASH----------QYIDKHNI-------HKATLDAIYHAVENLQVIPRSALIDGRSIP 126 S +SH + ++ N+ H + + E ++I S D R + Sbjct: 64 SISSHVKRVSPEELRELWNRGNLNDLLSIWHFEVVKEVLKDTEACRIIVDS--FDRRRLE 121 Query: 127 EDLPCQAFAVIKGDSISL---------SIAAASIIAK 154 E AF+ IKG + + S+AAASI+AK Sbjct: 122 E-----AFSQIKGIEVIIESGADLKYPSVAAASILAK 153 >gi|289434477|ref|YP_003464349.1| ribonuclease HIII, putative [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170721|emb|CBH27261.1| ribonuclease HIII, putative [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 296 Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 25/154 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78 V G DEVG G GP+ V A ++ +P G+ DSK + + + EKI Sbjct: 81 VLGSDEVGTGDFFGPITVCAAYVEETIMPLLKELGVKDSKAMKDPEICRIAEKIMPVVPH 140 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVEN-LQVI----PRSALIDGRS------- 124 +++ + + + +++ + A+ H A+EN L+ I P + LID + Sbjct: 141 SVLLCPNPKYNEMQSRGMNQGQMKALLHNRALENVLKKIAPTKPEAILIDQFAEKNTYYR 200 Query: 125 ----IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 P + F K + + LS+AAASIIA+ Sbjct: 201 YLAKEPTIIRENVFFATKAEGLHLSVAAASIIAR 234 >gi|260584114|ref|ZP_05851862.1| ribonuclease HIII [Granulicatella elegans ATCC 700633] gi|260158740|gb|EEW93808.1| ribonuclease HIII [Granulicatella elegans ATCC 700633] Length = 304 Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 31/176 (17%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS-- 77 W V G DEVG G+ GP+ VA + N I G+ DSK ++ + +E+ KI Sbjct: 89 WGVIGSDEVGTGSYFGPLTVACAFVPENLIKELQILGVKDSKILTDSQIQEIVPKIKELV 148 Query: 78 -SAIISISSASHQYIDKHN--------IHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 ++++ + + + +H + +Y + N ++ ++ LID P + Sbjct: 149 PYKLLTLWPEKYNEVQQTKNLNEMKALLHNQAIKRLYQQI-NADLL-QAVLIDEFCSPSN 206 Query: 129 L---------PCQAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 P +A KG+S +++AAAS+IA RD + +YG+ Sbjct: 207 YYRYLGDQSAPLKAITYFKTKGESHHIAVAAASMIA---RDAFLEGLKTLSKEYGY 259 >gi|167524000|ref|XP_001746336.1| hypothetical protein [Monosiga brevicollis MX1] gi|163775098|gb|EDQ88723.1| predicted protein [Monosiga brevicollis MX1] Length = 596 Score = 42.4 bits (98), Expect = 0.041, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 86/218 (39%), Gaps = 64/218 (29%) Query: 26 VAGIDEVGRGALAGPVVVAAII--LDPNN--IPFGINDSKKISHKKREELYEKITSSA-- 79 V G+DE GRG + GP+V A L N G DSK++S KR+EL++ I +A Sbjct: 301 VLGVDEAGRGPVLGPMVYAVAFAPLSENARMKKLGFADSKQLSEAKRDELFKVIKENADW 360 Query: 80 ------IISISSASHQYID--KHNI----HKATLDAI--YHA------------------ 107 +++ S S + KHN+ H++T+D + HA Sbjct: 361 MGWKVHMLAASDISAGMLSRTKHNLNAQAHESTVDLVKRLHAQGVQIKEDLTYRLRLNHR 420 Query: 108 ------------------------VENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + N++++ S L + DL + D Sbjct: 421 QLYVDTVGKAHIYQQQLENWLRPTIPNIKIVVESKLCVTHRV-SDLCVLILDIANADVTY 479 Query: 144 LSIAAASIIAKVTRDRLMRIA-HKKYPDYGFDSHVGYP 180 ++AASI AKVTRD ++ H + + D GYP Sbjct: 480 PIVSAASICAKVTRDAVLTYWRHPEQREIDNDFGCGYP 517 >gi|169596915|ref|XP_001791881.1| hypothetical protein SNOG_01231 [Phaeosphaeria nodorum SN15] gi|111069760|gb|EAT90880.1| hypothetical protein SNOG_01231 [Phaeosphaeria nodorum SN15] Length = 345 Score = 42.4 bits (98), Expect = 0.041, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 74/176 (42%), Gaps = 34/176 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-------NDSKKISHKKREELYEKITSS 78 V G+DE GRG + GP+V A L P + + +DSKK++ + R +L +I + Sbjct: 60 VLGVDEAGRGPVLGPMVYALFYL-PVELHHSLLADTHHFDDSKKLTPEVRSDLMRRICTP 118 Query: 79 AI-------ISISSASHQYIDKH-------NIHKATLDAIYHAVENL---QVIPRSALID 121 + S S Q I H N++ +DA ++ + V ID Sbjct: 119 GTDLYEAGGWATRSLSAQDISAHMLSPNVYNLNAQAMDATIDLIKEVLAKGVNVTEIYID 178 Query: 122 GRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 PE P V K DS+ ++AAS+ AKVTRD + + + Y Sbjct: 179 TIGRPETYQRKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRDAAINVCYAPY 234 >gi|326693332|ref|ZP_08230337.1| ribonuclease HIII [Leuconostoc argentinum KCTC 3773] Length = 313 Score = 42.4 bits (98), Expect = 0.042, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 31/172 (18%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS- 78 W V G DEVG GA GP+ AA+ + + + + GI DSK ++ K ++ +I ++ Sbjct: 98 WSVLGSDEVGAGAYFGPLTTAAVYVPKDQLAWVRQLGIADSKTLTDAKMRQIAPEIIANL 157 Query: 79 ---AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 + + +Q +N+++ + AI H +V+ + A +I D QA Sbjct: 158 PHHVVNLMPEKYNQMQPTNNVNQ--MKAISHNFVLGKVLAKIAPTTPDAILIDQFAQAST 215 Query: 136 --------------------VIKGDSISLSIAAASIIAKVTR-DRLMRIAHK 166 KG+ LS+AAASI+A+V D + +++ + Sbjct: 216 YFKYLTQAQQSPIIKNNVHFTTKGEQYHLSVAAASILARVVELDSMAKLSEE 267 >gi|238809644|dbj|BAH69434.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 250 Score = 42.4 bits (98), Expect = 0.042, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 72/176 (40%), Gaps = 35/176 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREEL---YEKITSSAI 80 G+DEVG G GP+ AA+ + + I G+ DSKK+S K+ + + +KI AI Sbjct: 20 GVDEVGVGDYFGPLCCAAVFIPQDKIQEVIDLGVKDSKKLSDKQIKMMAYKLKKIVKYAI 79 Query: 81 ISISSASHQYIDKH---NIHKAT--LDAIYHAVENLQVIPRSALIDGRSIPEDLP----- 130 +S + ++K N K L AI E + + ID S + Sbjct: 80 HHLSPKGYNTLNKTYNGNFLKMFTHLSAISSLQEKIGAVDY-VFIDQYSTKSSIERYYTD 138 Query: 131 ------CQAFAVIKGD--------SISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 F I+GD SISL +A ASIIA RD + K Y Sbjct: 139 LVKLNNWADFNQIQGDILLAYKAESISLEVACASIIA---RDYFLYFMQKMNEQYN 191 >gi|293366878|ref|ZP_06613554.1| ribonuclease HIII [Staphylococcus epidermidis M23864:W2(grey)] gi|291319179|gb|EFE59549.1| ribonuclease HIII [Staphylococcus epidermidis M23864:W2(grey)] gi|329729960|gb|EGG66351.1| ribonuclease HIII [Staphylococcus epidermidis VCU144] gi|329734428|gb|EGG70741.1| ribonuclease HIII [Staphylococcus epidermidis VCU045] gi|329736208|gb|EGG72480.1| ribonuclease HIII [Staphylococcus epidermidis VCU028] Length = 308 Score = 42.4 bits (98), Expect = 0.043, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 24/157 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 N + G DE G G GP+ V A + ++I G++DSKK++ K +L E++ + Sbjct: 86 NRFHCIGSDEAGSGDYFGPLTVCAAYVSQSHIKILKELGVDDSKKLNDTKIVDLAEQLIT 145 Query: 78 ---SAIISISSASHQYIDKHNIHKATLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE 127 +++++ + + + + A+ H A++N LQ I + L ID + E Sbjct: 146 FIPHSLLTLDNVKYNERQSIGWSQVKMKAVLHNEAIKNVLQKIEQDQLDYIVIDQFAKRE 205 Query: 128 DLPCQAFAVI----------KGDSISLSIAAASIIAK 154 A + + KG+S SL+IAAASII++ Sbjct: 206 VYQHYALSALPFPDKTKFETKGESKSLAIAAASIISR 242 >gi|195456019|ref|XP_002074967.1| GK22869 [Drosophila willistoni] gi|194171052|gb|EDW85953.1| GK22869 [Drosophila willistoni] Length = 336 Score = 42.4 bits (98), Expect = 0.043, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 39/188 (20%) Query: 28 GIDEVGRGALAGPVV--VAAIILDPNN--IPFGINDSKKISHKKREELYEKITS------ 77 G+DE GRG + GP+V ++ L+ I G DSK+++ +KR+ ++ ++ + Sbjct: 63 GVDEAGRGPVLGPMVYGISYCPLESKQALIDLGCADSKQLTEEKRDIIFNELNTLDYATE 122 Query: 78 -----SAIIS--ISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127 IIS + S+S K ++++ ++D+ ++ + V +D PE Sbjct: 123 CIGWAVEIISPNVISSSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVQIAEVYVDTVGPPE 182 Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP------DYG 172 P V K DS ++AASI AKVTRD +++ K+P D Sbjct: 183 KYQEKLLRRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--KFPEGLVIKDNA 240 Query: 173 FDSHVGYP 180 F S GYP Sbjct: 241 FGS--GYP 246 >gi|308189676|ref|YP_003922607.1| ribonuclease H [Mycoplasma fermentans JER] gi|307624418|gb|ADN68723.1| ribonuclease H [Mycoplasma fermentans JER] Length = 249 Score = 42.4 bits (98), Expect = 0.044, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 72/176 (40%), Gaps = 35/176 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREEL---YEKITSSAI 80 G+DEVG G GP+ AA+ + + I G+ DSKK+S K+ + + +KI AI Sbjct: 19 GVDEVGVGDYFGPLCCAAVFIPQDKIQEVIDLGVKDSKKLSDKQIKMMAYKLKKIVKYAI 78 Query: 81 ISISSASHQYIDKH---NIHKAT--LDAIYHAVENLQVIPRSALIDGRSIPEDLP----- 130 +S + ++K N K L AI E + + ID S + Sbjct: 79 HHLSPKGYNTLNKTYNGNFLKMFTHLSAISSLQEKIGAVDY-VFIDQYSTKSSIERYYTD 137 Query: 131 ------CQAFAVIKGD--------SISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 F I+GD SISL +A ASIIA RD + K Y Sbjct: 138 LVKLNNWADFNQIQGDILLAYKAESISLEVACASIIA---RDYFLYFMQKMNEQYN 190 >gi|293364827|ref|ZP_06611544.1| ribonuclease HIII [Streptococcus oralis ATCC 35037] gi|307703076|ref|ZP_07640023.1| ribonuclease HIII [Streptococcus oralis ATCC 35037] gi|291316277|gb|EFE56713.1| ribonuclease HIII [Streptococcus oralis ATCC 35037] gi|307623469|gb|EFO02459.1| ribonuclease HIII [Streptococcus oralis ATCC 35037] Length = 293 Score = 42.4 bits (98), Expect = 0.044, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 25/155 (16%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 +P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 FPMIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHNIHKATL----DAIYHAVENLQVIPRSALIDGRSIPED-- 128 + A++ S ++ I +++N + AI+ ++ V P +IDG + P++ Sbjct: 138 SHQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQK-GVQPEKIVIDGFTSPKNYD 196 Query: 129 ---------LPCQAFAVIKGDSISLSIAAASIIAK 154 P + K + L++A +SIIA+ Sbjct: 197 KYLAQEANRFPNKITLEEKAEGKYLAVAVSSIIAR 231 >gi|319776859|ref|YP_004136510.1| ribonuclease [Mycoplasma fermentans M64] gi|318037934|gb|ADV34133.1| Ribonuclease [Mycoplasma fermentans M64] Length = 249 Score = 42.4 bits (98), Expect = 0.045, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 72/176 (40%), Gaps = 35/176 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREEL---YEKITSSAI 80 G+DEVG G GP+ AA+ + + I G+ DSKK+S K+ + + +KI AI Sbjct: 19 GVDEVGVGDYFGPLCCAAVFIPQDKIQEVIDLGVKDSKKLSDKQIKMMAYKLKKIVKYAI 78 Query: 81 ISISSASHQYIDKH---NIHKAT--LDAIYHAVENLQVIPRSALIDGRSIPEDLP----- 130 +S + ++K N K L AI E + + ID S + Sbjct: 79 HHLSPKGYNTLNKTYNGNFLKMFTHLSAISSLQEKIGAVDY-VFIDQYSTKSSIERYYTD 137 Query: 131 ------CQAFAVIKGD--------SISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 F I+GD SISL +A ASIIA RD + K Y Sbjct: 138 LVKLNNWADFNQIQGDILLAYKAESISLEVACASIIA---RDYFLYFMQKMNEQYN 190 >gi|157136849|ref|XP_001656938.1| ribonuclease hi large subunit [Aedes aegypti] gi|108880967|gb|EAT45192.1| ribonuclease hi large subunit [Aedes aegypti] Length = 335 Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 32/186 (17%) Query: 26 VAGIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS--A 79 V G+DE GRG + GP+V +A + + G DSK+++ +KR+ +++++ A Sbjct: 61 VLGVDEAGRGPVLGPMVYGIAFCPITKKEVLKKLGFADSKQLTEEKRDVIFDEMNQKDYA 120 Query: 80 IISISSA-----------SHQYIDKHNIHKATLDA----IYHAVENLQVIPRSALIDGRS 124 + SI A S K ++++ ++D+ I A+E I +D Sbjct: 121 VESIGWAVEVIAPNDICMSMLRRTKRSLNEVSMDSAIGLIRKAIEAGVNIA-EVYVDTVG 179 Query: 125 IPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRI-AHKKYPDYGFD 174 PE + + K DS ++AASI AKV+RD +++ + ++ + G + Sbjct: 180 PPEKYQAKLKQIFPKFKITVAKKADSTYPIVSAASICAKVSRDHALKVWSFREGLEPGIN 239 Query: 175 SHVGYP 180 GYP Sbjct: 240 FGSGYP 245 >gi|297703733|ref|XP_002828781.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease H2 subunit A-like [Pongo abelii] Length = 313 Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 77/200 (38%), Gaps = 49/200 (24%) Query: 26 VAGIDEVGRGALAGPVV------------VAAIILDP-----NNIPFGINDSKKISHKKR 68 V G+DE GRG L GP + V AI P + + DSK + +R Sbjct: 30 VLGVDEAGRGPLIGPRLPENXHPSSPGPMVYAICYCPLSRLADLEALKVADSKTLLESER 89 Query: 69 EELYEK------------ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116 E L+ K + S +IS S + +++ T + + V Sbjct: 90 ERLFAKMEDRDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVT 149 Query: 117 SALIDGRSIPEDLPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLM------ 161 +D +PE Q+F I K D++ ++AASI AKV RD+ + Sbjct: 150 QVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFV 209 Query: 162 -RIAHKKYPDYGFDSHVGYP 180 ++ Y DYG GYP Sbjct: 210 EKLQDSXYTDYG----SGYP 225 >gi|169335211|ref|ZP_02862404.1| hypothetical protein ANASTE_01619 [Anaerofustis stercorihominis DSM 17244] gi|169257949|gb|EDS71915.1| hypothetical protein ANASTE_01619 [Anaerofustis stercorihominis DSM 17244] Length = 304 Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust. Identities = 50/211 (23%), Positives = 103/211 (48%), Gaps = 35/211 (16%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREEL---YEKITS 77 P+ G DEVG+G P++V ++ L+ N G+ DSK +S + +L +K+T+ Sbjct: 99 PLLGSDEVGKGDFYAPIIVGSVYLEKNEYDILKTLGVRDSKDLSDDRIIKLASEIKKVTN 158 Query: 78 S-AIISISSASHQYIDKHNIHKATLDAI--YHAVENLQVIP-----RSALIDG------- 122 + +I+ I + + + K ++AI + V N++ + + AL+D Sbjct: 159 NYSILRIGQSKYNELYK---KIGNINAILAWAHVTNIKNVYKKQHFKKALVDKFGREEQI 215 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT- 181 R+ ++L + K + ++++AAASI+A RD L+ Y FD +G + Sbjct: 216 RNGLKELNLEMIFKPKAEQ-NIAVAAASILA---RDALLTTIKNMNKHYDFDFPLGANSI 271 Query: 182 --AKHQQVIKEKGPSCIH---RLTFRPLRNL 207 K ++ +K+ G ++ ++ F+ ++N+ Sbjct: 272 VITKGKEFVKKFGEEELNNVCKMHFKTVQNI 302 >gi|241957291|ref|XP_002421365.1| ribonuclease large subunit, putative [Candida dubliniensis CD36] gi|223644709|emb|CAX40699.1| ribonuclease large subunit, putative [Candida dubliniensis CD36] Length = 366 Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust. Identities = 56/212 (26%), Positives = 85/212 (40%), Gaps = 45/212 (21%) Query: 11 HFELEAMVREKNMWP-VAGIDEVGRGALAGPVVVA-AIILDPNNI----PFGINDSKKIS 64 H E+ V + P V G+DE GRG + G +V A L+ + +G DSK ++ Sbjct: 75 HSEIPQNVLQNETEPIVLGVDEAGRGPVLGAMVYGIAYSLESFSSKLQKEYGFADSKVLT 134 Query: 65 HKKREELYEKI---------------TSSAIISISSASHQYID-------KHNIHKATLD 102 KREEL+++I T+ ISS Q ++ H T+D Sbjct: 135 DVKREELFKQIEDPEHELHKHIGWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTID 194 Query: 103 AIYHAVENLQVIPRSALIDG------------RSIPEDLPCQAFAVIKGDSISLSIAAAS 150 I + I + +D R PE K DSI ++ AS Sbjct: 195 LIKQVLAKGVKISK-IFVDTVGPPVTYQAKLKRFFPE---IDVTVTKKADSIYPIVSTAS 250 Query: 151 IIAKVTRDRLMRIAHKKYPDY-GFDSHVGYPT 181 ++AKVTRD ++ ++ P G GYP+ Sbjct: 251 VVAKVTRDTNIKFYNENLPLLQGQKLGSGYPS 282 >gi|296422347|ref|XP_002840722.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636945|emb|CAZ84913.1| unnamed protein product [Tuber melanosporum] Length = 336 Score = 42.0 bits (97), Expect = 0.055, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 42/171 (24%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKIT----- 76 + G+DE GRG + GP+V A ++ P +DSKK++H R L + +T Sbjct: 64 ILGVDEAGRGPVLGPMVYAVAYCLKSDNPMLREHKFDDSKKLTHSLRTHLLQTLTTPDTT 123 Query: 77 -----------------SSAIISISSASHQYIDKHNIHKATLDA---IYHAVENLQVIPR 116 SS ++ +++S Y N++ DA + AV + V R Sbjct: 124 LHRNLGWSTISLSPRDISSGMLRSTTSSSTY----NLNAQAFDATTTLITAVLSSGVNIR 179 Query: 117 SALIDG--------RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRD 158 +D + + P A V K DSI ++AAS+ AKVTRD Sbjct: 180 EIYVDTVGTASTYQSRLQKLFPHIAVTVSKKADSIYPIVSAASVCAKVTRD 230 >gi|295658160|ref|XP_002789642.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb01] gi|226283127|gb|EEH38693.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb01] Length = 343 Score = 42.0 bits (97), Expect = 0.055, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 72/176 (40%), Gaps = 35/176 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG------INDSKKISHKKREELYE------ 73 V G+DE GRG + GP++ +A L + +DSK ++ R L Sbjct: 58 VLGVDEAGRGPVLGPMIYSAFYLPLSLHHSLLAKEHHFDDSKVLTPAVRTNLMRLLCTPD 117 Query: 74 -----------KITSSAIIS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 K+ S+ IS + S + Y AT++ I VE + V + Sbjct: 118 HSLNTSCGWGVKVLSARDISTGMLRSGTGNYNLNAQAMDATIELIICIVEKMGVNVKEVY 177 Query: 120 IDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK 166 ID PE P V K DS+ S++AAS+ AKVTRD + + ++ Sbjct: 178 IDTIGNPETYQKKLKRIFPALKITVTKKADSLYPSVSAASVCAKVTRDVALELCYE 233 >gi|326483287|gb|EGE07297.1| ribonuclease HI large subunit [Trichophyton equinum CBS 127.97] Length = 323 Score = 42.0 bits (97), Expect = 0.057, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 74/180 (41%), Gaps = 38/180 (21%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-------NDSKKISHKKREELYE----- 73 V GIDE GRG + GP+V +A L P ++ + +DSK ++ + R L Sbjct: 68 VLGIDEAGRGPVLGPMVYSAFYL-PIHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLCTK 126 Query: 74 ------------KITSSAIISISSASHQYIDKHNIHKATLDA----IYHAVENLQVIPRS 117 K+ S+ IS +N++ LDA I VE ++ + Sbjct: 127 GHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNSQALDATIEIIRGVVETQRIDVKE 186 Query: 118 ALIDGRSIPEDLPCQAFAVIKG---------DSISLSIAAASIIAKVTRDRLMRIAHKKY 168 +D PE + V G DS+ ++AAS+ AKVTRD + ++ + Sbjct: 187 VYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESW 246 >gi|326472233|gb|EGD96242.1| ribonuclease H2 subunit A [Trichophyton tonsurans CBS 112818] Length = 361 Score = 42.0 bits (97), Expect = 0.059, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 74/180 (41%), Gaps = 38/180 (21%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-------NDSKKISHKKREELYE----- 73 V GIDE GRG + GP+V +A L P ++ + +DSK ++ + R L Sbjct: 68 VLGIDEAGRGPVLGPMVYSAFYL-PIHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLCTK 126 Query: 74 ------------KITSSAIISISSASHQYIDKHNIHKATLDA----IYHAVENLQVIPRS 117 K+ S+ IS +N++ LDA I VE ++ + Sbjct: 127 GHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNSQALDATIEIIRGVVETQRIDVKE 186 Query: 118 ALIDGRSIPEDLPCQAFAVIKG---------DSISLSIAAASIIAKVTRDRLMRIAHKKY 168 +D PE + V G DS+ ++AAS+ AKVTRD + ++ + Sbjct: 187 VYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESW 246 >gi|85057383|ref|YP_456299.1| ribonuclease HIII [Aster yellows witches'-broom phytoplasma AYWB] gi|84789488|gb|ABC65220.1| ribonuclease HIII [Aster yellows witches'-broom phytoplasma AYWB] Length = 330 Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 27/157 (17%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN-----DSKKISHKKREE----LYEK 74 P G DEVG G + GPVVV + L NI F N +SKKIS +K + ++ Sbjct: 117 LPSIGSDEVGTGDVFGPVVVCCVYLTAKNIAFLQNLGIIAESKKISDEKIINIAPLIMKE 176 Query: 75 ITSSAIISISSASHQYIDKHNIHK--------ATLDAIYHAVENLQVI------PR---S 117 + S+ I + +Q I + N++K A ++ A N+ VI P+ + Sbjct: 177 VIYSSKIMMPLEYNQIIKQCNLNKIKALMHNEAIKQTVFKAPPNVPVILDQFCFPKNYFN 236 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 L D + E F K DS S+A AS+IA+ Sbjct: 237 YLQDQKDQNEVYTNIIFET-KADSSYFSVAVASVIAR 272 >gi|115385935|ref|XP_001209514.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114187961|gb|EAU29661.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 339 Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 37/178 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKR---------- 68 V G+DE GRG + GP+V +A L P+++ + +DSK ++ R Sbjct: 59 VLGVDEAGRGPVLGPMVYSAFYL-PHDLHHSLLAQKYSFDDSKVLTPAVRLNLMRTLCTP 117 Query: 69 -EELYE------KITSSAIIS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 L+E K+ ++ IS + A+ Y AT++ I VE +V R Sbjct: 118 GTPLFESCGWATKLLTAQDISSGMMRPAAAAYNLNAQAMDATIEIIRGIVEERKVNVREV 177 Query: 119 LIDGRSIPED--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 ID P P V K DS+ ++AAS+ AKVTRD + + +++ Sbjct: 178 YIDTIGNPASYQQKLERIFPTLKITVAKKADSLYPCVSAASVAAKVTRDIALELCYEE 235 >gi|50551451|ref|XP_503199.1| YALI0D23661p [Yarrowia lipolytica] gi|49649067|emb|CAG81399.1| YALI0D23661p [Yarrowia lipolytica] Length = 315 Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 78/190 (41%), Gaps = 39/190 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAI-----ILDPNNIPFGINDSKKISHKKREELYEKI----- 75 + G+DE GRG + G +V D G DSK ++ +KR L +I Sbjct: 43 ILGVDEAGRGPVLGSMVYGLAYCTKEFADEELSKTGFADSKTLTAEKRSALMREICCDET 102 Query: 76 ---------TSSAIISISSASHQYIDK--HNI----HKATLDAIYHAVENLQVIPRSALI 120 TS ISSA + + + +N+ H T+ A+ V + V+ A I Sbjct: 103 LVEHLGWCTTSMTAQDISSAMLRPMSRGVYNLNDQAHDTTM-ALIQGVLDRGVLLTEAYI 161 Query: 121 DGRSIP--------EDLPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 D P + P F V K DS+ ++AASI AKVTRD ++ + Sbjct: 162 DTVGPPASYTAKLSKQFPHIKFTVTKKADSLFPIVSAASICAKVTRDMDLKSQDLSEGTW 221 Query: 172 GFDSHVGYPT 181 G GYP+ Sbjct: 222 G----SGYPS 227 >gi|157693280|ref|YP_001487742.1| ribonuclease HIII [Bacillus pumilus SAFR-032] gi|166991072|sp|A8FG15|RNH3_BACP2 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|157682038|gb|ABV63182.1| ribonuclease H [Bacillus pumilus SAFR-032] Length = 307 Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 40/207 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 V G DEVG G GP+ V A +D +++ G+ DSK + + ++L + I Sbjct: 95 VIGSDEVGTGDYFGPITVCAAYVDASHLALMKELGVKDSKGLKDPQIINIAKDLIKTIPF 154 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH------AVENLQ-VIPRSALID--------- 121 S ++ + + + + + + + + A+ H A+E L P + LID Sbjct: 155 SLLV-LRNEKYNAMQEKGMSQGKMKALLHNQVITSALEKLDGKQPEAILIDQFAEPGIYF 213 Query: 122 ----GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK----VTRDRLMRIAHKKYPDYGF 173 G+ I + + + K + I LS+AAASIIA+ + D+L A + P G Sbjct: 214 KHLAGKKIIRE---RTYFSTKAEGIHLSVAAASIIARYAFLIEMDKLSEAAGFEIPK-GA 269 Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLT 200 HV AK +IK G + + T Sbjct: 270 GPHVDKAAAK---LIKLHGEEALRQFT 293 >gi|213857937|ref|ZP_03384908.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 44 Score = 41.6 bits (96), Expect = 0.069, Method: Composition-based stats. Identities = 19/25 (76%), Positives = 21/25 (84%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP 50 VAG+DEVGRG L G VV AA+ILDP Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDP 36 >gi|167043102|gb|ABZ07812.1| putative uncharacterized protein family UPF0102 [uncultured marine microorganism HF4000_ANIW141I9] Length = 172 Score = 41.6 bits (96), Expect = 0.070, Method: Compositional matrix adjust. Identities = 15/38 (39%), Positives = 25/38 (65%) Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 +P+YGF H GY T+ H + + + S IHR +F+P++ Sbjct: 8 FPEYGFAKHKGYGTSFHMEQLNKNKASLIHRKSFKPVK 45 >gi|319651783|ref|ZP_08005909.1| ribonuclease [Bacillus sp. 2_A_57_CT2] gi|317396602|gb|EFV77314.1| ribonuclease [Bacillus sp. 2_A_57_CT2] Length = 312 Score = 41.6 bits (96), Expect = 0.072, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 25/154 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---S 78 V G DEVG G GP+ V A + + IP G+ DSK + +K E+ ++I Sbjct: 94 VIGSDEVGTGDYFGPITVVAAYVKKDQIPLLKELGVKDSKNLGDEKIIEIAKQIKDIVPY 153 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI-------PRSALIDGRSIPE---- 127 +++++ + + + + + + + A+ H V+ P + LID + E Sbjct: 154 SLLTLHNEKYNKLQQSGMSQGKIKALLHNQAIGHVLGKIAPEKPEAILIDQFAKEEVYFN 213 Query: 128 DLPCQ-------AFAVIKGDSISLSIAAASIIAK 154 L Q F K + I L++AAASI+A+ Sbjct: 214 YLKNQQTIQRERVFFSTKAEGIHLAVAAASILAR 247 >gi|306826719|ref|ZP_07460021.1| ribonuclease HIII [Streptococcus pyogenes ATCC 10782] gi|304431008|gb|EFM34015.1| ribonuclease HIII [Streptococcus pyogenes ATCC 10782] Length = 300 Score = 41.6 bits (96), Expect = 0.072, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 4/51 (7%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREEL 71 P+ G DEVG G+ G + V A +DP + F G++DSKK+S K +++ Sbjct: 84 PIVGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQI 134 >gi|149183057|ref|ZP_01861510.1| ribonuclease HIII [Bacillus sp. SG-1] gi|148849238|gb|EDL63435.1| ribonuclease HIII [Bacillus sp. SG-1] Length = 309 Score = 41.6 bits (96), Expect = 0.073, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 91/203 (44%), Gaps = 35/203 (17%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS---SAI 80 G DEVG G GP+ V A + IP G+ DSK ++ +K + + + S ++ Sbjct: 96 GSDEVGTGDFFGPITVVAAYVKKEQIPLLKELGVKDSKNLNDEKIIAIAKNLLSVIPYSL 155 Query: 81 ISISSASHQYIDKHNIHKATLDAIYH--AVENL-QVI----PRSALIDGRSIPEDLPCQA 133 + + + + + + + + A+ H A+ NL Q I P + LID + E+ + Sbjct: 156 LICHNDKYNALQEKGMSQGKIKALLHNRAILNLLQKIAPEKPEAVLID-QFAEENTYYKY 214 Query: 134 FA------------VIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDSHV 177 A KG+SI LS+AAASI+A+ D+L +A P G V Sbjct: 215 LAGQKEIHRENVLFSTKGESIHLSVAAASILARYAFVKEMDKLSALAGFPIPK-GAGKQV 273 Query: 178 GYPTAKHQQVIKEKGPSCIHRLT 200 AK +I++ G + ++T Sbjct: 274 DIAGAK---IIRKSGADELKKIT 293 >gi|332030069|gb|EGI69894.1| Ribonuclease H2 subunit A [Acromyrmex echinatior] Length = 332 Score = 41.6 bits (96), Expect = 0.077, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 90/207 (43%), Gaps = 44/207 (21%) Query: 9 RPHF-ELEAMVREKNMWPVA-GIDEVGRGALAGPVV--VAAIILDPNN--IPFGINDSKK 62 R HF E+ + ++K P G+DE GRG + GP+V ++ L N + G DSK Sbjct: 47 RIHFSEVSQICKDK---PCQLGVDEAGRGPVLGPMVYGISYAPLSQNQLLVDLGCADSKS 103 Query: 63 ISHKKREELYEKIT---SSAIISISSASHQYIDKHNIHKAT------------LDAIYHA 107 ++ KKR+E+++ I S +I S I +N+++ T + I A Sbjct: 104 LTEKKRDEIFDDICKHKDSIGWAIEVISPNVI-ANNMYRRTKISLNEISMISATNLIREA 162 Query: 108 VENLQVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRD 158 +E V +D PE + ++ K D+ ++AASI AKV+RD Sbjct: 163 IE-AGVNVAEIYVDTVGKPESYQTRLKSIFPSIKIIVAKKADATYPIVSAASICAKVSRD 221 Query: 159 RLMRIAHKKYPD-----YGFDSHVGYP 180 +R + D YG GYP Sbjct: 222 HAIRAWRFREDDCIETEYG----SGYP 244 >gi|172058184|ref|YP_001814644.1| ribonuclease HIII [Exiguobacterium sibiricum 255-15] gi|229564305|sp|B1YJY9|RNH3_EXIS2 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|171990705|gb|ACB61627.1| ribonuclease HIII [Exiguobacterium sibiricum 255-15] Length = 306 Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 4/45 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64 W V G DEVG+G GP+VV A +D I G+ DSK +S Sbjct: 87 WSVVGSDEVGKGDFFGPLVVVAAYVDKTKIELVRELGVRDSKNVS 131 >gi|291229986|ref|XP_002734939.1| PREDICTED: RNase H family member (rnh-2)-like [Saccoglossus kowalevskii] Length = 303 Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 28/170 (16%) Query: 28 GIDEVGRGALAGPVVVA----AIILDPNNIPFGINDSKKISHKKREELYEKI-------- 75 GIDE GRG + GP+V I + G DSK +S ++REEL+ KI Sbjct: 34 GIDEAGRGPVLGPMVYGICYCPISKNEQLAEMGFADSKTLSEEQREELFTKIYEANQVLG 93 Query: 76 -----TSSAIISISSASHQYIDKHNIHK-ATLDAIYHAVE---NLQVIPRSALIDGRS-- 124 S IIS S + + K + + + +E N++ + + D Sbjct: 94 YKMEVLSPNIISNSMFRRTKCSLNTVSKDSAIKLLRLTIEEGANIKEVYVDTVGDASKYQ 153 Query: 125 --IPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 + E P V K D+ ++AASI AKV RDR ++ ++P++ Sbjct: 154 AYLKELFPDLEITVTPKADAKFPIVSAASICAKVCRDRAVK--SWQFPEF 201 >gi|257456663|ref|ZP_05621856.1| ribonuclease HII [Treponema vincentii ATCC 35580] gi|257445930|gb|EEV20980.1| ribonuclease HII [Treponema vincentii ATCC 35580] Length = 42 Score = 41.2 bits (95), Expect = 0.082, Method: Composition-based stats. Identities = 21/35 (60%), Positives = 25/35 (71%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62 GIDE GRGALAGPV AA+IL + ++DSKK Sbjct: 5 GIDEAGRGALAGPVYAAAVILPASFDVSVLDDSKK 39 >gi|195032708|ref|XP_001988545.1| GH10519 [Drosophila grimshawi] gi|193904545|gb|EDW03412.1| GH10519 [Drosophila grimshawi] Length = 334 Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 41/189 (21%) Query: 28 GIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITS------ 77 G+DE GRG + GP+V ++ L+ ++ G DSK+++ +KR+ ++ + + Sbjct: 61 GVDEAGRGPVLGPMVYGISYCPLESKSVLVELGCADSKQLTEEKRDIIFNDLNTLEYANS 120 Query: 78 -----SAIIS--ISSASHQYIDKHNIHKATLDA----IYHAVENLQVIPRSALIDGRSIP 126 IIS + S+S K ++++ ++D+ I HA+ + V +D P Sbjct: 121 CIGWAVEIISPNVISSSMYRRTKCSLNEISMDSAMGLIQHAI-DAGVNIAEVYVDTVGPP 179 Query: 127 ED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHKKYP------DY 171 E P V K DS ++AASI AKVTRD +++ ++P D Sbjct: 180 EKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--QFPEGLLIKDN 237 Query: 172 GFDSHVGYP 180 F S GYP Sbjct: 238 AFGS--GYP 244 >gi|269115105|ref|YP_003302868.1| ribonuclease HII [Mycoplasma hominis] gi|268322730|emb|CAX37465.1| Ribonuclease HII [Mycoplasma hominis ATCC 23114] Length = 232 Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust. Identities = 46/196 (23%), Positives = 84/196 (42%), Gaps = 48/196 (24%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT 76 KN+ + G+DE G G PV+ A + +NI G+ DSKK+S K+ E++ +I Sbjct: 3 KNLDELIGVDETGVGDYFSPVISVACYIPKDNIEKLKQIGVKDSKKLSDKRIIEIFNQIE 62 Query: 77 ---------------------------------SSAIISISSASHQYIDKH-NIHKATLD 102 S++I ++ +Q ID + + +L+ Sbjct: 63 NLVYYQKTCLSQSGYNKLIDAGINNNEIKTLIHSNSINILTKKLNQNIDVFIDQYTTSLE 122 Query: 103 AIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162 + + LQ I + +D + ++ + KG+ SL++AAASII+ R L+ Sbjct: 123 VLQKHFKKLQAI---SWLDFKKPQNEIIIET----KGEEKSLAVAAASIIS---RKFLID 172 Query: 163 IAHKKYPDYGFDSHVG 178 ++ Y F+ +G Sbjct: 173 WMQQQNKKYNFEFKLG 188 >gi|37362282|gb|AAQ91269.1| ribonuclease H2, large subunit [Danio rerio] gi|220678488|emb|CAP09311.2| novel protein similar to ribonuclease H2, large subunit (RNASEH2A, zgc:56307) [Danio rerio] Length = 307 Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 38/186 (20%) Query: 28 GIDEVGRGALAGPVVVAAIIL------DPNNIPFGINDSKKISHKKREELYEKITSS--- 78 GIDE GRG + GP+V D N+ + DSK ++ +RE L+ K+ + Sbjct: 32 GIDEAGRGPVLGPMVYGICFCPVSRKEDLKNLK--VADSKTLTEAERENLFVKLDEAKSF 89 Query: 79 -----AIIS---ISSASHQYIDKHNI----HKATLDAIYHAVENLQVIPRSALIDGRSIP 126 I+S IS++ Q K+N+ H A + + +A+++ V + +D Sbjct: 90 VGWALQILSPNMISTSMLQRA-KYNLNALSHDAAIGLVQYALDS-GVQLKEVFVDTVGPA 147 Query: 127 E---DLPCQAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG---FD 174 E D Q F + K DS+ ++AASI AKV RD ++ + K D G D Sbjct: 148 EKYQDKLSQRFPGVEVTVRPKADSLFPIVSAASICAKVARDHAVK-SWKFAEDLGDVDTD 206 Query: 175 SHVGYP 180 GYP Sbjct: 207 YGSGYP 212 >gi|302683973|ref|XP_003031667.1| hypothetical protein SCHCODRAFT_55770 [Schizophyllum commune H4-8] gi|300105360|gb|EFI96764.1| hypothetical protein SCHCODRAFT_55770 [Schizophyllum commune H4-8] Length = 286 Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 31/182 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-- 79 + G+DE GRG + GP+V + G DSK + +RE L E + S+ Sbjct: 31 ILGVDEAGRGPVLGPLVYGVAYVAETGKERMEAMGFADSKTLDAARREALLETLCSAPDV 90 Query: 80 ------IISISSASHQYIDK--HNIHKATLDAIYHAVENL--QVIPRSA-LIDG------ 122 +IS + S + + N+++ + DA + + + I SA +D Sbjct: 91 LGWAVRVISPQALSSGMLRRPPTNLNEQSRDATVMLIRGVLARGIQLSAVFVDALGPTVA 150 Query: 123 --RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 + + + P F V K DS + AAS+ AKVTRD L I ++P + GY Sbjct: 151 YEQWLSQRFPEIKFTVANKADSKFKIVGAASVAAKVTRDAL--IDASRFPA---ERGSGY 205 Query: 180 PT 181 P+ Sbjct: 206 PS 207 >gi|306828934|ref|ZP_07462126.1| ribonuclease HIII [Streptococcus mitis ATCC 6249] gi|304429112|gb|EFM32200.1| ribonuclease HIII [Streptococcus mitis ATCC 6249] Length = 293 Score = 41.2 bits (95), Expect = 0.089, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 25/155 (16%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 +P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 FPMIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHNIHKATL----DAIYHAVENLQVIPRSALIDGRSIPED-- 128 A++ S ++ I +++N + AI+ ++N V P +ID + P++ Sbjct: 138 PHQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQN-GVQPEKIVIDAFTSPKNYD 196 Query: 129 ---------LPCQAFAVIKGDSISLSIAAASIIAK 154 P + K + L++A +SIIA+ Sbjct: 197 KYLAQEANRFPNKVSLEEKAEGKYLAVAVSSIIAR 231 >gi|241154557|ref|XP_002407329.1| ribonuclease HI large subunit, putative [Ixodes scapularis] gi|215494090|gb|EEC03731.1| ribonuclease HI large subunit, putative [Ixodes scapularis] Length = 306 Score = 41.2 bits (95), Expect = 0.091, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 11/109 (10%) Query: 28 GIDEVGRGALAGPVVVA----AIILDPNNIPFGINDSKKISHKKREEL---YEKITSSAI 80 G+DE GRG + GP+V + + + G DSK ++ +KREEL E+ + S Sbjct: 32 GVDEAGRGPVLGPMVYGIAYCPVEFEEDLKRLGFADSKTLTEEKREELVGVMEQRSESLG 91 Query: 81 ISISSASHQYIDKH--NIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + S I H N+ K +L+AI H ++ + + AL DG + E Sbjct: 92 WMVEVISPTVICNHMLNMSKYSLNAISH--DSAIGLIKQALDDGVCVTE 138 >gi|330719016|ref|ZP_08313616.1| ribonuclease HIII [Leuconostoc fallax KCTC 3537] Length = 214 Score = 41.2 bits (95), Expect = 0.091, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 77/163 (47%), Gaps = 30/163 (18%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA---I 80 G DEVG GA GP+ AA+ + +N+ + G+ DSK ++ ++ KI + + Sbjct: 3 GSDEVGAGAYFGPLTTAAVYISQDNLDWVRQLGVADSKTLTDHDMIKMAPKIIAHLPHHV 62 Query: 81 ISISSASHQYID-KHNIHKATLDAIYHAVENLQVI-------PRSALIDGRSIPED---- 128 +++ + I ++N+++ + AI H +V+ P++ LID ++P+ Sbjct: 63 VNLLPEKYNAIQPQNNVNQ--MKAISHNFALHKVLEKIAPQKPQAILIDQFALPQTYYKH 120 Query: 129 ---------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162 + + K + LS+AAASI+A+ + M+ Sbjct: 121 LTNANQQPIVRENVYFTTKAEQYHLSVAAASILARYVELQTMK 163 >gi|28374439|gb|AAH46061.1| Ribonuclease H2, subunit A [Danio rerio] Length = 307 Score = 41.2 bits (95), Expect = 0.096, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 38/186 (20%) Query: 28 GIDEVGRGALAGPVVVAAIIL------DPNNIPFGINDSKKISHKKREELYEKITSS--- 78 GIDE GRG + GP+V D N+ + DSK ++ +RE L+ K+ + Sbjct: 32 GIDEAGRGPVLGPMVYGICFCPVSRKEDLKNLK--VADSKTLTEAERENLFVKLDEAKSF 89 Query: 79 -----AIIS---ISSASHQYIDKHNI----HKATLDAIYHAVENLQVIPRSALIDGRSIP 126 I+S IS++ Q K+N+ H A + + +A+++ V + +D Sbjct: 90 VGWALQILSPNMISTSMLQRA-KYNLNALSHDAAIGLVQYALDS-GVQLKEVFVDTVGPA 147 Query: 127 E---DLPCQAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG---FD 174 E D Q F + K DS+ ++AASI AKV RD ++ + K D G D Sbjct: 148 EKYQDKLSQRFPGVEVTVRPKADSLFPIVSAASICAKVARDHAVK-SWKFAEDLGDVDTD 206 Query: 175 SHVGYP 180 GYP Sbjct: 207 YGSGYP 212 >gi|56808625|ref|ZP_00366352.1| COG1039: Ribonuclease HIII [Streptococcus pyogenes M49 591] Length = 300 Score = 41.2 bits (95), Expect = 0.097, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 8/77 (10%) Query: 3 CNSIPERPHFELEAMVREKNM----WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--- 55 N++ + + + V E N P+ G DEVG G+ G + V A +DP + F Sbjct: 58 ANALAQELNLPVAKTVFEANNNSQDIPIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKK 117 Query: 56 -GINDSKKISHKKREEL 71 G++DSKK+S K +++ Sbjct: 118 LGVDDSKKLSDKTIQQI 134 >gi|46446313|ref|YP_007678.1| ribonuclease HIII [Candidatus Protochlamydia amoebophila UWE25] gi|73917847|sp|Q6MDE6|RNH3_PARUW RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|46399954|emb|CAF23403.1| putative ribonuclease HII [Candidatus Protochlamydia amoebophila UWE25] Length = 301 Score = 41.2 bits (95), Expect = 0.099, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 11/106 (10%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 ++ P GIDE G+G GP+ +A + + N G+ DSK +S K +L +I + Sbjct: 88 DLTPHIGIDESGKGDFFGPLCIAGVYIQANQFSKLQALGVKDSKTLSDKTIRQLASQIKN 147 Query: 78 SA---IISISSASHQ--YIDKHNIHKATLDAIYHAVENLQVIPRSA 118 I+ I+ A + Y D N++ L A HA Q+I +S Sbjct: 148 LCLYHIVKINPAKYNEIYQDFKNLNH--LLAWGHATTIEQLILQSG 191 >gi|313678720|ref|YP_004056460.1| ribonuclease HIII [Mycoplasma bovis PG45] gi|312950718|gb|ADR25313.1| ribonuclease HIII [Mycoplasma bovis PG45] Length = 238 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 45/186 (24%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI 80 + G+DEVG G GP+ A+ +D N+ GI DSKK+S KK +EL K+ +S + Sbjct: 17 SIIGVDEVGVGDYFGPLCACAVFIDAQNVNKVAELGIKDSKKLSDKKIKELALKLKNSGL 76 Query: 81 ISISSA----------SHQY---IDKHNIHKATLDAIYHAVENLQ----VIPRSALIDG- 122 I S A + Y I K +H ++++ ++N++ I + A +D Sbjct: 77 IYYSLAHLNPSGYNKLNKSYNANILKMFVHLKAINSVVFKLKNIKYDYIFIDKYASVDNM 136 Query: 123 ----------------RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 + I ED+ K +S S+S+AAASI+A RD+ + + K Sbjct: 137 LKYYNELVINNNWANFQEINEDILIAN----KAESYSVSVAAASILA---RDQFLTLVSK 189 Query: 167 KYPDYG 172 +Y Sbjct: 190 MNDEYN 195 >gi|48762662|ref|NP_956520.2| ribonuclease H2 subunit A [Danio rerio] gi|47938809|gb|AAH71375.1| Ribonuclease H2, subunit A [Danio rerio] Length = 307 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 38/186 (20%) Query: 28 GIDEVGRGALAGPVVVAAIIL------DPNNIPFGINDSKKISHKKREELYEKITSS--- 78 GIDE GRG + GP+V D N+ + DSK ++ +RE L+ K+ + Sbjct: 32 GIDEAGRGPVLGPMVYGICFCPVSRKEDLKNLK--VADSKTLTEAERENLFVKLDEAKSF 89 Query: 79 -----AIIS---ISSASHQYIDKHNI----HKATLDAIYHAVENLQVIPRSALIDGRSIP 126 I+S IS++ Q K+N+ H A + + +A+++ V + +D Sbjct: 90 VGWALQILSPNMISTSMLQRA-KYNLNALSHDAAIGLVQYALDS-GVQLKEVFVDTVGPA 147 Query: 127 E---DLPCQAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG---FD 174 E D Q F + K DS+ ++AASI AKV RD ++ + K D G D Sbjct: 148 EKYQDKLSQRFPGVEVTVRPKADSLFPIVSAASICAKVARDHAVK-SWKFAEDLGDVDTD 206 Query: 175 SHVGYP 180 GYP Sbjct: 207 YGSGYP 212 >gi|70926382|ref|XP_735739.1| ribonuclease H1 large subunit [Plasmodium chabaudi chabaudi] gi|56509666|emb|CAH81806.1| ribonuclease H1 large subunit, putative [Plasmodium chabaudi chabaudi] Length = 133 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 4/57 (7%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI 80 GIDE GRG + GP+V + + I+DSKKIS RE+++ K+ +S + Sbjct: 20 GIDEAGRGPVLGPMVYSGFYCKKEDEKLLKEMKIDDSKKISENDREKMFYKLNNSTL 76 >gi|10835820|pdb|1EKE|A Chain A, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii) With Mes Ligand gi|10835821|pdb|1EKE|B Chain B, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii) With Mes Ligand Length = 230 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 36/188 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG + GP VV A + + G+ DSK+++ KR L + + + + Sbjct: 3 IIGIDEAGRGPVLGPXVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYLKKLLENLGYV 62 Query: 82 S--ISSAS--HQYIDKHNIHKATLDAIYHAVENL-----------QVIPRSALIDGRSIP 126 I A +Q + N++ ++A +NL ++ + + + Sbjct: 63 EKRILEAEEINQLXNSINLNDIEINAFSKVAKNLIEKLNIRDDEIEIYIDACSTNTKKFE 122 Query: 127 EDLPCQAFAVIKGDSISLSI-------------AAASIIAKVTRDRLMRIAHKKYPDYGF 173 + + +IK ++++ I +AASIIAK RD ++ K Y D G Sbjct: 123 DSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAKAERDEIIDYYKKIYGDIG- 181 Query: 174 DSHVGYPT 181 GYP+ Sbjct: 182 ---SGYPS 186 >gi|94989199|ref|YP_597300.1| ribonuclease HIII [Streptococcus pyogenes MGAS9429] gi|94993086|ref|YP_601185.1| ribonuclease HIII [Streptococcus pyogenes MGAS2096] gi|166226673|sp|Q1JA20|RNH3_STRPB RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|166226674|sp|Q1JK67|RNH3_STRPC RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|94542707|gb|ABF32756.1| ribonuclease HIII [Streptococcus pyogenes MGAS9429] gi|94546594|gb|ABF36641.1| Ribonuclease HIII [Streptococcus pyogenes MGAS2096] Length = 300 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 4/51 (7%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREEL 71 P+ G DEVG G+ G + V A +DP + F G++DSKK+S K +++ Sbjct: 84 PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQI 134 >gi|209559934|ref|YP_002286406.1| ribonuclease HIII [Streptococcus pyogenes NZ131] gi|226741383|sp|B5XI49|RNH3_STRPZ RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|209541135|gb|ACI61711.1| Ribonuclease HIII [Streptococcus pyogenes NZ131] Length = 300 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 4/51 (7%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREEL 71 P+ G DEVG G+ G + V A +DP + F G++DSKK+S K +++ Sbjct: 84 PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQI 134 >gi|332522787|ref|ZP_08399039.1| ribonuclease HIII [Streptococcus porcinus str. Jelinkova 176] gi|332314051|gb|EGJ27036.1| ribonuclease HIII [Streptococcus porcinus str. Jelinkova 176] Length = 319 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 9/72 (12%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKIS-HKKRE--- 69 R++N+ P+ G DEVG G+ G + V A ++P + P+ G+NDSK ++ HK R+ Sbjct: 96 TRDQNI-PLIGSDEVGNGSYFGGLAVVASYVEPTDHPYLKELGVNDSKTLNDHKIRQIAP 154 Query: 70 ELYEKITSSAII 81 L EKI A++ Sbjct: 155 LLEEKIRHKALL 166 >gi|139473162|ref|YP_001127877.1| ribonuclease HIII [Streptococcus pyogenes str. Manfredo] gi|166226677|sp|A2RCQ5|RNH3_STRPG RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|134271408|emb|CAM29628.1| ribonuclease HIII [Streptococcus pyogenes str. Manfredo] Length = 300 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 4/51 (7%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREEL 71 P+ G DEVG G+ G + V A +DP + F G++DSKK+S K +++ Sbjct: 84 PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQI 134 >gi|312208153|pdb|3P56|A Chain A, The Structure Of The Human Rnase H2 Complex Defines Key Interaction Interfaces Relevant To Enzyme Function And Human Disease gi|312208156|pdb|3P56|D Chain D, The Structure Of The Human Rnase H2 Complex Defines Key Interaction Interfaces Relevant To Enzyme Function And Human Disease Length = 299 Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 81/194 (41%), Gaps = 30/194 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 V G+ E GRG + GP+V A + + DSK + +RE L+ K+ + + Sbjct: 30 VLGVAEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFV 89 Query: 82 SIS---------SASHQYIDKHNI----HKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + S S K+N+ H I +A++ V +D +PE Sbjct: 90 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQ-GVNVTQVFVDTVGMPET 148 Query: 129 LPC---QAF----AVIKGDSISLS--IAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177 Q+F +K + +L ++AASI AKV RD+ ++ +K D D Sbjct: 149 YQARLQQSFPGIEVTVKAKAAALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGS 208 Query: 178 GYPT-AKHQQVIKE 190 GYP K + +KE Sbjct: 209 GYPNDPKTKAWLKE 222 >gi|21911127|ref|NP_665395.1| ribonuclease HIII [Streptococcus pyogenes MGAS315] gi|28895188|ref|NP_801538.1| ribonuclease HIII [Streptococcus pyogenes SSI-1] gi|25091193|sp|Q8K5Y5|RNH3_STRP3 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|21905338|gb|AAM80198.1| putative ribonuclease HIII [Streptococcus pyogenes MGAS315] gi|28810433|dbj|BAC63371.1| putative ribonuclease HIII [Streptococcus pyogenes SSI-1] Length = 300 Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 4/51 (7%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREEL 71 P+ G DEVG G+ G + V A +DP + F G++DSKK+S K +++ Sbjct: 84 PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQI 134 >gi|227499052|ref|ZP_03929189.1| ribonuclease HIII [Acidaminococcus sp. D21] gi|226904501|gb|EEH90419.1| ribonuclease HIII [Acidaminococcus sp. D21] Length = 320 Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust. Identities = 55/227 (24%), Positives = 103/227 (45%), Gaps = 44/227 (19%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKRE 69 L A+ + +W AG DE G+G GP+ VAA+ILD + G+ DSK +S K Sbjct: 103 LGAVKKPGELW--AGSDESGKGDYLGPLCVAAVILDEIGAKKLLALGVRDSKTLSDAKIR 160 Query: 70 ELYEKI------TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----A 118 L ++ +++A + + +Y N++ L + YH + V+ + A Sbjct: 161 RLAPQVYAIAKASAAAALMPQQYNEEYEKAQNLN--PLLSTYHIGAIMTVLKKVPECHFA 218 Query: 119 LIDG------------RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 L+D R++P ++ KG++ +++AAASI+A R ++ + Sbjct: 219 LVDQFTRSPYIKNELERAVP---GLSVYSHTKGEA-DMAVAAASILA---RSLFLKKMEE 271 Query: 167 KYPDYGFDSHVG---YPTAKHQQVIKEKGPSCIH---RLTFRPLRNL 207 + GF+ G T +++I+++G + +L F +NL Sbjct: 272 LSQEAGFELPFGGGAQATRAAEKIIQQEGRERLGHYAKLHFANTKNL 318 >gi|319892130|ref|YP_004149005.1| Ribonuclease HIII [Staphylococcus pseudintermedius HKU10-03] gi|317161826|gb|ADV05369.1| Ribonuclease HIII [Staphylococcus pseudintermedius HKU10-03] Length = 312 Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 24/165 (14%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---SAI 80 G DE G G GP+ V A + +IP G++DSK+++ KK L E++ + ++ Sbjct: 98 GSDEAGSGDYFGPLTVCACYVSAQHIPILKELGVDDSKRLTDKKIVALAEQLVTFLPHSL 157 Query: 81 ISISSASHQYIDKHNIHKATLDAIYH--AVEN-LQVIPRSA----LIDGRSIPEDLPCQA 133 + + + + + + + A+ H ++N L+ + + +ID + E A Sbjct: 158 LVLDNPKYNERKQLGWSQVKMKAVLHNECIKNVLKKVDATEVDYIVIDQFAKQEVYEHYA 217 Query: 134 FAVI----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 I KG+S SL+IAAASII++ + M K+Y Sbjct: 218 LGAIPERQKTQFETKGESKSLAIAAASIISRYAFVKHMDQLSKRY 262 >gi|94995019|ref|YP_603117.1| ribonuclease HIII [Streptococcus pyogenes MGAS10750] gi|166226676|sp|Q1J513|RNH3_STRPF RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|94548527|gb|ABF38573.1| Ribonuclease HIII [Streptococcus pyogenes MGAS10750] Length = 300 Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 4/51 (7%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREEL 71 P+ G DEVG G+ G + V A +DP + F G++DSKK+S K +++ Sbjct: 84 PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQI 134 >gi|15675667|ref|NP_269841.1| ribonuclease HIII [Streptococcus pyogenes M1 GAS] gi|19746773|ref|NP_607909.1| ribonuclease HIII [Streptococcus pyogenes MGAS8232] gi|50914922|ref|YP_060894.1| ribonuclease HIII [Streptococcus pyogenes MGAS10394] gi|71911377|ref|YP_282927.1| ribonuclease HIII [Streptococcus pyogenes MGAS5005] gi|54039253|sp|P66678|RNH3_STRP8 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|54042176|sp|P66677|RNH3_STRP1 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|73917858|sp|Q5XA52|RNH3_STRP6 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|13622880|gb|AAK34562.1| putative ribonuclease HIII [Streptococcus pyogenes M1 GAS] gi|19749005|gb|AAL98408.1| putative ribonuclease HIII [Streptococcus pyogenes MGAS8232] gi|50903996|gb|AAT87711.1| Ribonuclease HIII [Streptococcus pyogenes MGAS10394] gi|71854159|gb|AAZ52182.1| ribonuclease HIII [Streptococcus pyogenes MGAS5005] Length = 300 Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 4/51 (7%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREEL 71 P+ G DEVG G+ G + V A +DP + F G++DSKK+S K +++ Sbjct: 84 PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQI 134 >gi|323464759|gb|ADX76912.1| ribonuclease HIII [Staphylococcus pseudintermedius ED99] Length = 312 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 24/165 (14%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---SAI 80 G DE G G GP+ V A + +IP G++DSK+++ KK L E++ + ++ Sbjct: 98 GSDEAGSGDYFGPLTVCACYVSAQHIPILKELGVDDSKRLTDKKIVALAEQLVTFLPHSL 157 Query: 81 ISISSASHQYIDKHNIHKATLDAIYH--AVEN-LQVIPRSA----LIDGRSIPEDLPCQA 133 + + + + + + + A+ H ++N L+ + + +ID + E A Sbjct: 158 LVLDNPKYNERKQLGWSQVKMKAVLHNECIKNVLKKVDATEVDYIVIDQFAKQEVYEHYA 217 Query: 134 FAVI----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 I KG+S SL+IAAASII++ + M K+Y Sbjct: 218 LGAIPERQKTQFETKGESKSLAIAAASIISRYAFVKHMDQLSKRY 262 >gi|302657829|ref|XP_003020627.1| hypothetical protein TRV_05276 [Trichophyton verrucosum HKI 0517] gi|291184480|gb|EFE40009.1| hypothetical protein TRV_05276 [Trichophyton verrucosum HKI 0517] Length = 361 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 38/180 (21%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-------NDSKKISHKKREELYE----- 73 V GIDE GRG + GP+V +A L P ++ + +DSK ++ + R L Sbjct: 68 VLGIDEAGRGPVLGPMVYSAFYL-PIHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLCTQ 126 Query: 74 ------------KITSSAIISISSASHQYIDKHNIHKATLDA----IYHAVENLQVIPRS 117 K+ S+ IS +N++ LDA I VE + + Sbjct: 127 GHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQGIDVKE 186 Query: 118 ALIDGRSIPEDLPCQAFAVIKG---------DSISLSIAAASIIAKVTRDRLMRIAHKKY 168 +D PE + V G DS+ ++AAS+ AKVTRD + ++ + Sbjct: 187 VYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESW 246 >gi|315044861|ref|XP_003171806.1| ribonuclease H2 subunit A [Arthroderma gypseum CBS 118893] gi|311344149|gb|EFR03352.1| ribonuclease H2 subunit A [Arthroderma gypseum CBS 118893] Length = 362 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 38/180 (21%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-------NDSKKISHKKREELYE----- 73 V GIDE GRG + GP+V +A L P ++ + +DSK ++ + R L Sbjct: 68 VLGIDEAGRGPVLGPMVYSAFYL-PIHLHNSLLADEHHFDDSKVLTPEVRSNLMRSLCTQ 126 Query: 74 ------------KITSSAIISISSASHQYIDKHNIHKATLDA----IYHAVENLQVIPRS 117 K+ S+ IS +N++ LDA I VE + + Sbjct: 127 GHSLHNSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQGIDVKE 186 Query: 118 ALIDGRSIPEDLPCQAFAVIKG---------DSISLSIAAASIIAKVTRDRLMRIAHKKY 168 +D PE + V G DS+ ++AAS+ AKVTRD + ++ + Sbjct: 187 VYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESW 246 >gi|302510819|ref|XP_003017361.1| hypothetical protein ARB_04241 [Arthroderma benhamiae CBS 112371] gi|291180932|gb|EFE36716.1| hypothetical protein ARB_04241 [Arthroderma benhamiae CBS 112371] Length = 361 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 38/180 (21%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-------NDSKKISHKKREELYE----- 73 V GIDE GRG + GP+V +A L P ++ + +DSK ++ + R L Sbjct: 68 VLGIDEAGRGPVLGPMVYSAFYL-PIHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLCTQ 126 Query: 74 ------------KITSSAIISISSASHQYIDKHNIHKATLDA----IYHAVENLQVIPRS 117 K+ S+ IS +N++ LDA I VE + + Sbjct: 127 SHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQGINVKE 186 Query: 118 ALIDGRSIPEDLPCQAFAVIKG---------DSISLSIAAASIIAKVTRDRLMRIAHKKY 168 +D PE + V G DS+ ++AAS+ AKVTRD + ++ + Sbjct: 187 VYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESW 246 >gi|195388322|ref|XP_002052829.1| GJ19740 [Drosophila virilis] gi|194149286|gb|EDW64984.1| GJ19740 [Drosophila virilis] Length = 339 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 39/188 (20%) Query: 28 GIDEVGRGALAGPVV--VAAIILDPNN--IPFGINDSKKISHKKREELYEKITS------ 77 G+DE GRG + GP+V ++ L+ + + G DSK+++ +KRE ++ + + Sbjct: 66 GVDEAGRGPVLGPMVYGISYCPLERKSALVELGCADSKQLTEEKREIIFNDLNTLEYANS 125 Query: 78 -----SAIIS--ISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127 IIS + S+S K ++++ ++D+ ++ + V +D PE Sbjct: 126 CIGWAVEIISPNVISSSMYRRTKCSLNEVSMDSAMGLIQEAIDAGVNIAEVYVDTVGPPE 185 Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP------DYG 172 P V K DS ++AASI AKVTRD +++ +P D Sbjct: 186 KYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWQ--FPEGLIIKDNA 243 Query: 173 FDSHVGYP 180 F S GYP Sbjct: 244 FGS--GYP 249 >gi|328783769|ref|XP_396289.3| PREDICTED: ribonuclease H2 subunit A-like isoform 1 [Apis mellifera] Length = 350 Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 36/184 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELYEKITSS---- 78 GIDE GRG + GP+V I P + + G DSK ++ +KR+ +++KI Sbjct: 82 GIDEAGRGPVLGPMVY-GISYAPLSEKQLLVDLGCADSKSLTEEKRDTIFDKICEQYKTI 140 Query: 79 ----AIIS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA------LIDGRSI 125 +IS IS++ ++ + K ++++ ++++ A+E +++ + +D Sbjct: 141 GWAVDVISPNVISNSMYRRV-KTSLNEVSMNS---AIELAKLVIEAGARITEIYVDTIGK 196 Query: 126 PEDLPC---QAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 PE Q F I K DS ++AASI AKV+RD +R + Sbjct: 197 PEKYQAKLEQIFPDIKITVAKKADSTYPIVSAASICAKVSRDHAIRAWQFLEGSITTEYG 256 Query: 177 VGYP 180 GYP Sbjct: 257 SGYP 260 >gi|150864655|ref|XP_001383577.2| hypothetical protein PICST_31007 [Scheffersomyces stipitis CBS 6054] gi|149385911|gb|ABN65548.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 347 Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 35/172 (20%) Query: 26 VAGIDEVGRGALAGPVVVA-AIILDPNNI----PFGINDSKKISHKKREELYEKI----- 75 V G+DE GRG + GP+V A L+ + +G DSK + +KR+EL+ I Sbjct: 72 VLGVDEAGRGPVLGPMVYGIAFALEKYSTRLQKEYGFADSKTLKEEKRDELFYSIEDEAN 131 Query: 76 ----------TSSAIISISSA---SHQYIDKHNIHKATLDAIYHAVENL---QVIPRSAL 119 T+ ISS S I +N+++ D ++ + V + Sbjct: 132 ELNRNVGWATTTMTARDISSGMLRSVLGIGNYNLNEQAHDTTIQLIKEVIAKGVNVKKIY 191 Query: 120 IDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMR 162 +D P + + K DSI ++ AS++AKVTRD +R Sbjct: 192 VDTVGPPVTYQAKLQKIFPETEVTVAKKADSIYPIVSTASVMAKVTRDANIR 243 >gi|322387275|ref|ZP_08060885.1| ribonuclease HIII [Streptococcus infantis ATCC 700779] gi|321141804|gb|EFX37299.1| ribonuclease HIII [Streptococcus infantis ATCC 700779] Length = 293 Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 9/78 (11%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKK 67 +++E +V +N +P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K Sbjct: 67 YQVEQVVSGQN-FPLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKVGVGDSKTLTDQK 125 Query: 68 REELY----EKITSSAII 81 +L EKI A++ Sbjct: 126 IRQLASLLKEKIQHQALL 143 >gi|27467751|ref|NP_764388.1| ribonuclease HIII [Staphylococcus epidermidis ATCC 12228] gi|73917854|sp|Q8CPL8|RNH3_STAES RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|27315295|gb|AAO04430.1|AE016746_220 putative ribonuclease HIII [Staphylococcus epidermidis ATCC 12228] Length = 308 Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 28/159 (17%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 N + G DE G G GP+ V A + ++I G++DSKK++ K +L E++ + Sbjct: 86 NRFHCIGSDEAGSGDYFGPLTVCAAYVSQSHIKILKELGVDDSKKLNDTKIVDLAEQLIT 145 Query: 78 ---SAIISISSASHQYIDKHNI--HKATLDAIYH--AVEN-LQVIPRSAL----IDGRSI 125 +++++ + +Y ++ +I + + A+ H A++N LQ I + L ID + Sbjct: 146 FIPHSLLTLDNV--KYNERQSIGWSQVKMKAVLHNEAIKNVLQKIEQDQLDYIVIDQFAK 203 Query: 126 PEDLPCQAFAVI----------KGDSISLSIAAASIIAK 154 E A + + KG+S SL+IA ASII++ Sbjct: 204 REVYQHYALSALPFPDKTKFETKGESKSLAIAVASIISR 242 >gi|239613574|gb|EEQ90561.1| ribonuclease HI large subunit [Ajellomyces dermatitidis ER-3] gi|327352659|gb|EGE81516.1| ribonuclease [Ajellomyces dermatitidis ATCC 18188] Length = 343 Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 72/176 (40%), Gaps = 35/176 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG------INDSKKISHKKREELY------- 72 V G+DE GRG + GP+V +A L + +DSK ++ R L Sbjct: 58 VLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTPAVRSNLMHLLCSPD 117 Query: 73 EKITSSAIISISSASHQYID---------KHNIHKATLDA----IYHAVENLQVIPRSAL 119 +++S + S + I +N++ +DA I VE V R Sbjct: 118 NSLSTSCGWGVKVMSARDISAGMLRPRTRNYNLNAQAMDATTELIRCIVEEKGVNVREVY 177 Query: 120 IDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK 166 ID PE P V K DS+ S++AASI AKVTRD + I ++ Sbjct: 178 IDTIGNPETYQRKLERVFPSLKITVAKKADSLYPSVSAASICAKVTRDVALEICYE 233 >gi|163791555|ref|ZP_02185959.1| ribonuclease HIII [Carnobacterium sp. AT7] gi|159873191|gb|EDP67291.1| ribonuclease HIII [Carnobacterium sp. AT7] Length = 312 Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 38/162 (23%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 W V G DEVG G+ GP+ V A +D + + G+ DSK++ +I A Sbjct: 95 WSVIGSDEVGTGSYFGPLTVVAAYVDQSQLALLKELGVRDSKEMKD-------SEIIRVA 147 Query: 80 IISISSASHQYI----DKHNIHKATL-----------DAIYHAVENLQ-VIPRSALIDGR 123 I+ H + +K+N + T+ A+ H +E ++ P LID Sbjct: 148 KDLITFLPHSLLNVMPEKYNAIQPTMTQGKMKAILHNQALGHVLEKIKPKKPDGILIDQF 207 Query: 124 SIP-------EDLPCQAFAVI----KGDSISLSIAAASIIAK 154 +P D P Q I KG+ L++AAASIIA+ Sbjct: 208 ELPATYFKHISDQPKQIKETIYFQTKGEGHHLAVAAASIIAR 249 >gi|261192900|ref|XP_002622856.1| ribonuclease HI large subunit [Ajellomyces dermatitidis SLH14081] gi|239588991|gb|EEQ71634.1| ribonuclease HI large subunit [Ajellomyces dermatitidis SLH14081] Length = 343 Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 72/176 (40%), Gaps = 35/176 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG------INDSKKISHKKREELY------- 72 V G+DE GRG + GP+V +A L + +DSK ++ R L Sbjct: 58 VLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTPAVRSNLMHLLCSPD 117 Query: 73 EKITSSAIISISSASHQYID---------KHNIHKATLDA----IYHAVENLQVIPRSAL 119 +++S + S + I +N++ +DA I VE V R Sbjct: 118 NSLSTSCGWGVKVMSARDISAGMLRPRTRNYNLNAQAMDATTELIRCIVEEKGVNVREVY 177 Query: 120 IDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK 166 ID PE P V K DS+ S++AASI AKVTRD + I ++ Sbjct: 178 IDTIGNPETYQRKLERVFPSLKITVAKKADSLYPSVSAASICAKVTRDVALEICYE 233 >gi|154288434|ref|XP_001545012.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150408653|gb|EDN04194.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 341 Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 37/177 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI------PFGINDSKKISHKKREELYEKITSSA 79 V G+DE GRG + GP+V +A L + +DSK ++ + R L ++++ Sbjct: 57 VLGVDEAGRGPVLGPMVYSAFYLPLPLHHSLLAEEYHFDDSKVLTPEVRSSLMRQLSTPG 116 Query: 80 IISISSASHQYID-----------------KHNIHKATLDA----IYHAVENLQVIPRSA 118 S+SS+ + +N++ +DA I V+ + + Sbjct: 117 -NSLSSSCGWGVKVMSARDIAAGMLRPGTRNYNLNAQAMDATTELIRCIVQERGINVKEV 175 Query: 119 LIDGRSIPED--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHK 166 ID PE P V K DS+ S++AAS+ AKVTRD + I ++ Sbjct: 176 YIDTIGNPEAYQRKLEQIFPSLKITVAKKADSLYPSVSAASVCAKVTRDVALEICYR 232 >gi|242373372|ref|ZP_04818946.1| ribonuclease HIII [Staphylococcus epidermidis M23864:W1] gi|242348735|gb|EES40337.1| ribonuclease HIII [Staphylococcus epidermidis M23864:W1] Length = 311 Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 24/151 (15%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS---SAI 80 G DE G G GP+ V A + N G++DSKK++ K E+ E++ + ++ Sbjct: 96 GSDEAGSGDYFGPLTVCAAYVSEKNAQVLKTLGVDDSKKLTDTKIVEIAEQLITFIPHSL 155 Query: 81 ISISSASHQYIDKHNIHKATLDAIYH-----------AVENLQVI-----PRSALIDGRS 124 +++ + + K + + A+ H +E+L I + + + Sbjct: 156 LTLDNVKYNERQKMGWSQVKMKAVLHNEAIKNVTQKIEIEDLDYIVIDQFAKREVYQHYA 215 Query: 125 IPE-DLPCQAFAVIKGDSISLSIAAASIIAK 154 + E P + KG+S SL+IAAASII++ Sbjct: 216 LSELPFPKKTKFETKGESKSLAIAAASIISR 246 >gi|194017282|ref|ZP_03055894.1| ribonuclease hiii [Bacillus pumilus ATCC 7061] gi|194011150|gb|EDW20720.1| ribonuclease hiii [Bacillus pumilus ATCC 7061] Length = 307 Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 87/208 (41%), Gaps = 42/208 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKK----REELYEKITS 77 V G DEVG G GP+ V A +D + + G+ DSK + + ++L + I Sbjct: 95 VIGSDEVGTGDYFGPMTVCAAYVDASQLALMKELGVKDSKGLKDPQIINIAKDLIKTIPF 154 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA-- 135 S ++ + + + + + + + + A+ H V+ + +DG+ PE + FA Sbjct: 155 SLLV-LRNEKYNAMQEKGMSQGKMKALLHNQVITSVLEK---LDGKQ-PEAILIDQFAEP 209 Query: 136 -------------------VIKGDSISLSIAAASIIAK----VTRDRLMRIAHKKYPDYG 172 K + I LS+AAASIIA+ + D+L + A P G Sbjct: 210 GIYFKHLAGKKIIRERTYFSTKAEGIHLSVAAASIIARYAFLIEMDKLSKAAGFDIPK-G 268 Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 HV AK +IK G + + T Sbjct: 269 AGPHVDKAAAK---LIKLHGEEALRQFT 293 >gi|223967509|emb|CAR93485.1| CG13690-PA [Drosophila melanogaster] Length = 347 Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 29/165 (17%) Query: 28 GIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS----- 78 G+DE GRG + GP+V ++ L+ N G DSK+++ +KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEEKRDIIFNDINTKEYATS 133 Query: 79 ----AIISIS----SASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127 A+ IS S S K ++++ ++D+ ++ + V +D PE Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193 Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRI 163 P V K DS ++AASI AKVTRD +++ Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKV 238 >gi|327297598|ref|XP_003233493.1| ribonuclease HI large subunit [Trichophyton rubrum CBS 118892] gi|326464799|gb|EGD90252.1| ribonuclease HI large subunit [Trichophyton rubrum CBS 118892] Length = 361 Score = 40.4 bits (93), Expect = 0.17, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 38/180 (21%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-------NDSKKISHKKREELYE----- 73 V GIDE GRG + GP+V +A L P ++ + +DSK ++ + R L Sbjct: 68 VLGIDEAGRGPVLGPMVYSAFYL-PVHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLCTQ 126 Query: 74 ------------KITSSAIISISSASHQYIDKHNIHKATLDA----IYHAVENLQVIPRS 117 K+ S+ IS +N++ LDA I VE + + Sbjct: 127 GHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETHGIDVKE 186 Query: 118 ALIDGRSIPEDLPCQAFAVIKG---------DSISLSIAAASIIAKVTRDRLMRIAHKKY 168 +D PE + V G DS+ ++AAS+ AKVTRD + ++ + Sbjct: 187 VYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESW 246 >gi|291320114|ref|YP_003515372.1| ribonuclease HII [Mycoplasma agalactiae] gi|290752443|emb|CBH40414.1| Ribonuclease HII (RNase HII) [Mycoplasma agalactiae] Length = 238 Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 45/186 (24%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI 80 + GIDEVG G GP+ A+ +D N+ GI DSKKIS KK +EL K+ SS + Sbjct: 17 SIIGIDEVGVGDYFGPLCACAVFIDAKNVSKVAQLGIKDSKKISDKKIKELAAKLKSSKL 76 Query: 81 ISISSA-------------SHQYIDKHNIHKATLDAI----------------YHAVENL 111 IS S A + +I K +H ++++ Y + EN+ Sbjct: 77 ISYSLAHLNPSGYNKLNKNYNAHILKMFVHLKAINSLSAKLENDKHDYILIDKYASAENM 136 Query: 112 -----QVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 +++ + + + I ED+ A +S S+S+AAASI+A RD+ + + K Sbjct: 137 LKYYNELVISNNWANFKEINEDVLIANNA----ESYSISVAAASILA---RDQFLTLIAK 189 Query: 167 KYPDYG 172 +Y Sbjct: 190 MNEEYN 195 >gi|162447673|ref|YP_001620805.1| ribonuclease HIII [Acholeplasma laidlawii PG-8A] gi|161985780|gb|ABX81429.1| ribonuclease HIII [Acholeplasma laidlawii PG-8A] Length = 285 Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 24/154 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA 79 + G DEVG G GPVVV + +I F G+ DSK +++K+ +L I + Sbjct: 74 YAAIGSDEVGTGDALGPVVVCSAYASIEDIEFLEKLGVKDSKSMTNKEIVKLGPVIANRL 133 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED-----LPCQAF 134 SI + + ++ L+ I + N +I ++ ++ ++P LP F Sbjct: 134 THSIVILTPEKFNEQTQKGLNLNKIKALLHNHMIIKTTSKVEA-AVPVILDQFCLPTHYF 192 Query: 135 AVI--------------KGDSISLSIAAASIIAK 154 + K +S+ LS+AAASIIA+ Sbjct: 193 NYLKDEKLVYRDVEFYTKAESVHLSVAAASIIAR 226 >gi|194766523|ref|XP_001965374.1| GF24795 [Drosophila ananassae] gi|190617984|gb|EDV33508.1| GF24795 [Drosophila ananassae] Length = 347 Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 39/188 (20%) Query: 28 GIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS----- 78 G+DE GRG + GP+V +A L+ G DSK+++ +KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGIAYCPLESKKALEDLGCADSKQLTEEKRDIIFNDINTKDYATS 133 Query: 79 ----AIISIS----SASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127 A+ IS S S K ++++ ++D+ ++ + V +D PE Sbjct: 134 CIGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNISEVYVDTVGPPE 193 Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP------DYG 172 P V K DS ++AASI AKVTRD +++ + +P D Sbjct: 194 KYQEKLLKRFPTFKITVAKKADSTYPIVSAASICAKVTRDHALKVWN--FPEGLVIKDNA 251 Query: 173 FDSHVGYP 180 F S GYP Sbjct: 252 FGS--GYP 257 >gi|225155691|ref|ZP_03724179.1| ribonuclease HIII [Opitutaceae bacterium TAV2] gi|224803485|gb|EEG21720.1| ribonuclease HIII [Opitutaceae bacterium TAV2] Length = 356 Score = 40.0 bits (92), Expect = 0.21, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 4/51 (7%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREEL 71 P AG+DE G+G GPVV A +I + + I G+ DSKKI+ + EL Sbjct: 106 PHAGLDESGKGDFFGPVVAATVIAEKSAIEAWRKAGVQDSKKITENRILEL 156 >gi|146421659|ref|XP_001486774.1| hypothetical protein PGUG_00151 [Meyerozyma guilliermondii ATCC 6260] Length = 343 Score = 40.0 bits (92), Expect = 0.22, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 68/178 (38%), Gaps = 37/178 (20%) Query: 26 VAGIDEVGRGALAGPVVVA-AIILDPNNI----PFGINDSKKISHKKREELYEKIT---- 76 V G+DE GRG + GP+V + L+ +G DSK + KR EL+ + Sbjct: 73 VLGVDEAGRGPVLGPMVYGISYCLESYQEDLKHKYGFADSKVLKEDKRRELFYMVELMDH 132 Query: 77 ------------------SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 SSA++ A+ H T+ I V +L V + Sbjct: 133 ELNENVGWATRTMTARDISSAMLQGRGAAGGANLNEQAHNTTIQLI-REVLDLGVNVKKV 191 Query: 119 LIDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHKK 167 +D P P V K DSI ++ AS++AKVTRD + H + Sbjct: 192 FVDTVGPPATYQKKLQGIFPTLEITVTKKADSIFPIVSTASVVAKVTRDLNIHYYHDQ 249 >gi|89098885|ref|ZP_01171765.1| ribonuclease HIII [Bacillus sp. NRRL B-14911] gi|89086289|gb|EAR65410.1| ribonuclease HIII [Bacillus sp. NRRL B-14911] Length = 348 Score = 40.0 bits (92), Expect = 0.22, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 36/177 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREEL------YEKI 75 V G DEVG G GP+ V A ++P G+ DSK H K +++ +++ Sbjct: 133 VIGSDEVGTGDYFGPITVVAAYAKKESLPLLKELGVKDSK---HLKDDQIIRIAKEIKEV 189 Query: 76 TSSAIISISSASHQYIDKHNIHKATLDAIYH--AVEN-LQVI----PRSALIDGRSIPED 128 +++++ ++ + + + + + + A+ H A+ N L+ + P + LID + ED Sbjct: 190 VPYSLLTLKNSKYNQLQQSGMSQGKIKALLHNQAIGNVLKKMAPEKPEAILID-QFAKED 248 Query: 129 -----LPCQA-------FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 L Q+ F K + I LS+AAASI+A R +R K + GF Sbjct: 249 VYYRHLQGQSVIQRENVFFSTKAEGIHLSVAAASILA---RYAFLRYFDKLSEEAGF 302 >gi|229916367|ref|YP_002885013.1| ribonuclease HIII [Exiguobacterium sp. AT1b] gi|229467796|gb|ACQ69568.1| ribonuclease HIII [Exiguobacterium sp. AT1b] Length = 305 Score = 40.0 bits (92), Expect = 0.23, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKIS 64 W V G DEVG+G GP+VV A + + I G+ DSK++S Sbjct: 88 WSVVGSDEVGKGDYFGPLVVVAAFVSRDQIALVKELGVKDSKQLS 132 >gi|312210372|emb|CBX90459.1| similar to ribonuclease hi large subunit [Leptosphaeria maculans] Length = 357 Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 71/175 (40%), Gaps = 32/175 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG------INDSKKISHKKREELYEKITS-- 77 V G+DE GRG + GP+V A L + NDSK ++ R L + + Sbjct: 60 VLGVDEAGRGPVLGPMVYALFYLPLSLHHSLLADTHHFNDSKVLTADFRTSLMRTLCTPS 119 Query: 78 -----SAIISISSASHQYIDKH-------NIHKATLDAIYHAVENL---QVIPRSALIDG 122 +A + S S Q I H N++ +DA ++ + V ID Sbjct: 120 TDLHAAAGWATRSLSAQDISAHMLSPSVYNLNAQAMDATIDLIKGVLEKGVNVTDIYIDT 179 Query: 123 RSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 PE P V K DS+ ++AAS+ AKVTRD + + + KY Sbjct: 180 IGKPEIYQKKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRDAALEVGYGKY 234 >gi|320582951|gb|EFW97168.1| ribonuclease HI large subunit [Pichia angusta DL-1] Length = 303 Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 41/191 (21%) Query: 26 VAGIDEVGRGALAGPVV--VAAIILDPNN---IPFGINDSKKISHKKREELYEKI----- 75 + G+DE GRG + GP+V +A + D ++ +G DSK ++ ++R++L + I Sbjct: 42 ILGVDEAGRGPVLGPMVYGIAYCLKDYSSDLKSVYGFADSKTLTVERRDQLMKSIIEPDG 101 Query: 76 ----------TSSAIISISSA--SHQYIDKHNIHKATLDA---IYHAVENLQVIPRSALI 120 T+ ISS + I N+++ DA + V + +V + + Sbjct: 102 DLCQNVGWATTTMTARDISSEMLKPRLIGNINLNEQAHDATIKLIQGVLDQKVNLKEVYV 161 Query: 121 DG--------RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRD-RLMRIAHKKYPD 170 D R + P V K DS+ ++ ASI+AKVTRD L +A Sbjct: 162 DTVGPPDSYQRKLSSRFPGIKVTVTKKADSLFPIVSTASIVAKVTRDCSLYYLAD----- 216 Query: 171 YGFDSHVGYPT 181 G D GYP+ Sbjct: 217 -GADWGSGYPS 226 >gi|194853461|ref|XP_001968168.1| GG24650 [Drosophila erecta] gi|190660035|gb|EDV57227.1| GG24650 [Drosophila erecta] Length = 347 Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 83/188 (44%), Gaps = 39/188 (20%) Query: 28 GIDEVGRGALAGPVV--VAAIILDPNN--IPFGINDSKKISHKKREELYEKITSS----- 78 G+DE GRG + GP+V ++ L+ G DSK+++ +KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESKKPLEDLGCADSKQLTEEKRDIIFNDINTKDYATS 133 Query: 79 ------AIISIS--SASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127 IIS S S S K ++++ ++D+ ++ + V +D PE Sbjct: 134 CIGWAVEIISPSTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193 Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP------DYG 172 P V K DS ++AASI AKVTRD +++ K+P D Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--KFPEGLVIKDNA 251 Query: 173 FDSHVGYP 180 F S GYP Sbjct: 252 FGS--GYP 257 >gi|319401546|gb|EFV89756.1| ribonuclease HIII [Staphylococcus epidermidis FRI909] Length = 308 Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 24/157 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 N + G DE G G GP+ V A + ++I G++DSKK++ K +L E++ + Sbjct: 86 NHFHCIGSDEAGSGDYFGPLTVCAAYVSQSHIKILKELGVDDSKKLNDTKIVDLAEQLIT 145 Query: 78 ---SAIISISSASHQYIDKHNIHKATLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE 127 +++++ + + + + A+ H A++N +Q I + L ID + E Sbjct: 146 FIPHSLLTLDNVKYNERQSLGWSQVKMKAVLHNEAIKNVIQKIEQDQLDYIVIDQFAKRE 205 Query: 128 DLPCQAFAVI----------KGDSISLSIAAASIIAK 154 A + + KG+S SL+IA ASII++ Sbjct: 206 VYQHYALSALPFPDKTKFETKGESKSLAIATASIISR 242 >gi|255931627|ref|XP_002557370.1| Pc12g05230 [Penicillium chrysogenum Wisconsin 54-1255] gi|211581989|emb|CAP80150.1| Pc12g05230 [Penicillium chrysogenum Wisconsin 54-1255] Length = 343 Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 74/177 (41%), Gaps = 37/177 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKR---------- 68 V GIDE GRG + GP+V A L P ++ +DSK ++ R Sbjct: 62 VLGIDEAGRGPVLGPMVYGAFYL-PLDLHHSLLTEKHSFDDSKVLTPAVRANLMHLLNTP 120 Query: 69 -EELYE------KITSSAIIS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 + L+E K+ S+ IS + S + Y AT++ I VE+ V R Sbjct: 121 GDSLFESCGYAIKVLSARDISSGMMRSPTAVYNLNAQAMDATVEIIRGVVEDRGVDVREV 180 Query: 119 LIDGRSIPED--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHK 166 ID P P V K DS+ ++AAS+ AKVTRD + + ++ Sbjct: 181 YIDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAKVTRDVALEVMYE 237 >gi|294056228|ref|YP_003549886.1| ribonuclease HIII [Coraliomargarita akajimensis DSM 45221] gi|293615561|gb|ADE55716.1| ribonuclease HIII [Coraliomargarita akajimensis DSM 45221] Length = 329 Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 4/64 (6%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS 82 AG+DE G+G L GP+V A ++ D + + G+ DSKK++ +L ++I + + Sbjct: 111 AGMDESGKGDLFGPLVTACVVADGDMVRQWLELGVADSKKLTDNSILKLEKEIRKTKGVV 170 Query: 83 ISSA 86 I +A Sbjct: 171 IKTA 174 >gi|108803638|ref|YP_643575.1| RNase HII [Rubrobacter xylanophilus DSM 9941] gi|108764881|gb|ABG03763.1| RNase HII [Rubrobacter xylanophilus DSM 9941] Length = 311 Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 10/102 (9%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIIL-----DPNNIPFGINDSKKISHKKREEL----Y 72 N P GIDE G+G GP+VVA + L D G+ DSK + ++ L Sbjct: 87 NPLPRIGIDEAGKGEYLGPLVVAGVRLSGAGDDLRLRELGVRDSKALGAERVRRLARAVV 146 Query: 73 EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI 114 E++ A+ IS A +Y + ++ + + NL+++ Sbjct: 147 EELGGEAVRVISLAPREYGRRREEAGGNVNRLLAEL-NLEIV 187 >gi|240273728|gb|EER37247.1| ribonuclease HI large subunit [Ajellomyces capsulatus H143] gi|325094841|gb|EGC48151.1| ribonuclease HI large subunit [Ajellomyces capsulatus H88] Length = 341 Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 37/177 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI------PFGINDSKKISHKKREELYEKITSSA 79 V G+DE GRG + GP+V +A L + +DSK ++ R L ++ S+ Sbjct: 57 VLGVDEAGRGPVLGPMVYSAFYLPLPLHHSLLAEEYHFDDSKVLTPAVRSSLMRQL-STP 115 Query: 80 IISISSASHQYID-----------------KHNIHKATLDA----IYHAVENLQVIPRSA 118 S+SS+ + +N++ +DA I V+ + + Sbjct: 116 DNSLSSSCGWGVKVMSARDIAAGMLQPGTRNYNLNAQAMDATTELIRCIVQERGINVKEV 175 Query: 119 LIDGRSIPED--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHK 166 ID PE P V K DS+ S++AAS+ AKVTRD + I ++ Sbjct: 176 YIDTIGNPEAYQRKLEQIFPSLQITVAKKADSLYPSVSAASVCAKVTRDVALEICYR 232 >gi|57866643|ref|YP_188306.1| ribonuclease HIII [Staphylococcus epidermidis RP62A] gi|242242439|ref|ZP_04796884.1| ribonuclease HIII [Staphylococcus epidermidis W23144] gi|73917855|sp|Q5HQ34|RNH3_STAEQ RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|57637301|gb|AAW54089.1| ribonuclease HIII [Staphylococcus epidermidis RP62A] gi|242234146|gb|EES36458.1| ribonuclease HIII [Staphylococcus epidermidis W23144] Length = 308 Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 24/157 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 N + G DE G G GP+ V A + ++I G++DSKK++ K +L E++ + Sbjct: 86 NHFHCIGSDEAGSGDYFGPLTVCAAYVSQSHIKILKELGVDDSKKLNDTKIVDLAEQLIT 145 Query: 78 ---SAIISISSASHQYIDKHNIHKATLDAIYH--AVEN-LQVIPRSAL----IDGRSIPE 127 +++++ + + + + A+ H A++N +Q I + L ID + E Sbjct: 146 FIPHSLLTLDNVKYNERQSLGWSQVKMKAVLHNEAIKNVIQKIEQDQLDYIVIDQFAKRE 205 Query: 128 DLPCQAFAVI----------KGDSISLSIAAASIIAK 154 A + + KG+S SL+IA ASII++ Sbjct: 206 VYQHYALSALPFPDKTKFETKGESKSLAIATASIISR 242 >gi|270293333|ref|ZP_06199542.1| ribonuclease HIII [Streptococcus sp. M143] gi|270278182|gb|EFA24030.1| ribonuclease HIII [Streptococcus sp. M143] Length = 293 Score = 39.7 bits (91), Expect = 0.28, Method: Compositional matrix adjust. Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 37/218 (16%) Query: 18 VREKNM---WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE 70 VR++N +P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + Sbjct: 69 VRQENSGQDFPMIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQ 128 Query: 71 ----LYEKITSSAIISISSASHQYI-DKHNIHKATL----DAIYHAVENLQVIPRSALID 121 L EK+ A++ S ++ I +++N + AI+ ++ V P +ID Sbjct: 129 IAPILKEKVQHQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQK-GVQPERIVID 187 Query: 122 GRSIPED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 + P++ P + K + L++A +SIIA RD + + Sbjct: 188 AFTSPKNYDKYLTQEANRFPNKISLEEKAEGKYLAVAVSSIIA---RDLFLESLENLGRE 244 Query: 171 YGFDSHVGYPTAKHQ------QVIKEKGPSCIHRLTFR 202 G+ G TA + Q KG + +L F+ Sbjct: 245 LGYQLPSGAGTASDKVASKILQAYGMKGLNFCAKLHFK 282 >gi|320528430|ref|ZP_08029592.1| ribonuclease HIII [Solobacterium moorei F0204] gi|320131344|gb|EFW23912.1| ribonuclease HIII [Solobacterium moorei F0204] Length = 289 Score = 39.7 bits (91), Expect = 0.28, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 4/47 (8%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKIS 64 N +P AG DEVG G GPV V A + +++ F G+ DSK++S Sbjct: 78 NHYPQAGSDEVGTGDYFGPVCVCASYVTKDDVDFLVKLGVRDSKQMS 124 >gi|116806082|emb|CAL26424.1| CG13690 [Drosophila melanogaster] gi|116806084|emb|CAL26425.1| CG13690 [Drosophila melanogaster] gi|116806090|emb|CAL26428.1| CG13690 [Drosophila melanogaster] Length = 347 Score = 39.7 bits (91), Expect = 0.28, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 29/165 (17%) Query: 28 GIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS----- 78 G+DE GRG + GP+V ++ L+ N G DSK+++ KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 79 ----AIISIS----SASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127 A+ IS S S K ++++ ++D+ ++ + V +D PE Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193 Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRI 163 P V K DS ++AASI AKVTRD +++ Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKV 238 >gi|24580635|ref|NP_608521.1| CG13690 [Drosophila melanogaster] gi|11387117|sp|Q9VPP5|RNH2A_DROME RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|7296208|gb|AAF51500.1| CG13690 [Drosophila melanogaster] gi|66772719|gb|AAY55671.1| IP10665p [Drosophila melanogaster] gi|220951678|gb|ACL88382.1| CG13690-PA [synthetic construct] gi|223967491|emb|CAR93476.1| CG13690-PA [Drosophila melanogaster] gi|223967495|emb|CAR93478.1| CG13690-PA [Drosophila melanogaster] gi|223967497|emb|CAR93479.1| CG13690-PA [Drosophila melanogaster] gi|223967507|emb|CAR93484.1| CG13690-PA [Drosophila melanogaster] Length = 347 Score = 39.7 bits (91), Expect = 0.28, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 29/165 (17%) Query: 28 GIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS----- 78 G+DE GRG + GP+V ++ L+ N G DSK+++ KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 79 ----AIISIS----SASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127 A+ IS S S K ++++ ++D+ ++ + V +D PE Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193 Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRI 163 P V K DS ++AASI AKVTRD +++ Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKV 238 >gi|116806096|emb|CAL26431.1| CG13690 [Drosophila melanogaster] Length = 347 Score = 39.7 bits (91), Expect = 0.29, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 29/165 (17%) Query: 28 GIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS----- 78 G+DE GRG + GP+V ++ L+ N G DSK+++ KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 79 ----AIISIS----SASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127 A+ IS S S K ++++ ++D+ ++ + V +D PE Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193 Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRI 163 P V K DS ++AASI AKVTRD +++ Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKV 238 >gi|322374879|ref|ZP_08049393.1| ribonuclease HIII [Streptococcus sp. C300] gi|321280379|gb|EFX57418.1| ribonuclease HIII [Streptococcus sp. C300] Length = 293 Score = 39.7 bits (91), Expect = 0.29, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 25/155 (16%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 +P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 FPMIGTDEVGNGSYFGGLAVVASFVTPDQYDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHNIHKATL----DAIYHAVENLQVIPRSALIDGRSIPED-- 128 A++ S ++ I +++N + AI+ ++ V P +ID + P++ Sbjct: 138 PHQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQK-GVQPEKIVIDAFTSPKNYD 196 Query: 129 ---------LPCQAFAVIKGDSISLSIAAASIIAK 154 P + K + L++A +SIIA+ Sbjct: 197 KYLAQEANRFPNKISLEEKAEGKYLAVAVSSIIAR 231 >gi|116806092|emb|CAL26429.1| CG13690 [Drosophila melanogaster] gi|116806094|emb|CAL26430.1| CG13690 [Drosophila melanogaster] gi|116806102|emb|CAL26434.1| CG13690 [Drosophila melanogaster] Length = 347 Score = 39.7 bits (91), Expect = 0.29, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 29/165 (17%) Query: 28 GIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS----- 78 G+DE GRG + GP+V ++ L+ N G DSK+++ KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 79 ----AIISIS----SASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127 A+ IS S S K ++++ ++D+ ++ + V +D PE Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193 Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRI 163 P V K DS ++AASI AKVTRD +++ Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKV 238 >gi|116806086|emb|CAL26426.1| CG13690 [Drosophila melanogaster] gi|223967493|emb|CAR93477.1| CG13690-PA [Drosophila melanogaster] gi|223967499|emb|CAR93480.1| CG13690-PA [Drosophila melanogaster] gi|223967501|emb|CAR93481.1| CG13690-PA [Drosophila melanogaster] Length = 347 Score = 39.7 bits (91), Expect = 0.29, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 29/165 (17%) Query: 28 GIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS----- 78 G+DE GRG + GP+V ++ L+ N G DSK+++ KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 79 ----AIISIS----SASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127 A+ IS S S K ++++ ++D+ ++ + V +D PE Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193 Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRI 163 P V K DS ++AASI AKVTRD +++ Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKV 238 >gi|225555530|gb|EEH03822.1| ribonuclease HI large subunit [Ajellomyces capsulatus G186AR] Length = 341 Score = 39.7 bits (91), Expect = 0.29, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 37/177 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI------PFGINDSKKISHKKREELYEKITSSA 79 V G+DE GRG + GP+V +A L + +DSK ++ R L ++ S+ Sbjct: 57 VLGVDEAGRGPVLGPMVYSAFYLPLPLHHSLLAEEYHFDDSKVLTPAVRSSLMRQL-STP 115 Query: 80 IISISSASHQYID-----------------KHNIHKATLDA----IYHAVENLQVIPRSA 118 S+SS+ + +N++ +DA I V+ + + Sbjct: 116 DNSLSSSCGWGVKVMSARDIAAGMLRPGTRNYNLNAQAMDATTELIRCIVQERGINVKEV 175 Query: 119 LIDGRSIPED--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHK 166 ID PE P V K DS+ S++AAS+ AKVTRD + I ++ Sbjct: 176 YIDTIGNPEAYQRKLEQIFPSLKITVAKKADSLYPSVSAASVCAKVTRDVALEICYR 232 >gi|116806098|emb|CAL26432.1| CG13690 [Drosophila melanogaster] Length = 347 Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 29/165 (17%) Query: 28 GIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS----- 78 G+DE GRG + GP+V ++ L+ N G DSK+++ KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 79 ----AIISIS----SASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127 A+ IS S S K ++++ ++D+ ++ + V +D PE Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193 Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRI 163 P V K DS ++AASI AKVTRD +++ Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKV 238 >gi|116806080|emb|CAL26423.1| CG13690 [Drosophila melanogaster] gi|116806088|emb|CAL26427.1| CG13690 [Drosophila melanogaster] gi|116806100|emb|CAL26433.1| CG13690 [Drosophila melanogaster] Length = 347 Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 29/165 (17%) Query: 28 GIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS----- 78 G+DE GRG + GP+V ++ L+ N G DSK+++ KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 79 ----AIISIS----SASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127 A+ IS S S K ++++ ++D+ ++ + V +D PE Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193 Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRI 163 P V K DS ++AASI AKVTRD +++ Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKV 238 >gi|218281130|ref|ZP_03487665.1| hypothetical protein EUBIFOR_00226 [Eubacterium biforme DSM 3989] gi|218217644|gb|EEC91182.1| hypothetical protein EUBIFOR_00226 [Eubacterium biforme DSM 3989] Length = 282 Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 89/217 (41%), Gaps = 26/217 (11%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 LE +K AG DEVG G GPVVVA+ I+ GI DSK++ K Sbjct: 62 LEPATPQKEAQDQAGSDEVGTGDYFGPVVVASCIVTKEAREKLSHLGIQDSKQVDDTKIR 121 Query: 70 ELYEKITS----SAIISISSASHQYIDKHNIHKATLDAIYHAVENL----QVIPRSALID 121 +L I S +I +S + D N+ A NL +P+ +ID Sbjct: 122 KLAPLIKDVCPHSILIVPNSKYNDMHDSCNMVDMKCRLHNQAYVNLIHKGYTLPKQIVID 181 Query: 122 G-----------RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 + PE + F K ++ L++A ASI+A+ + +KY D Sbjct: 182 QFVQEKIYYRYLQGFPEVIRGITFET-KAENKYLAVACASILARNAFLEAWDLMEEKY-D 239 Query: 171 YGFDSHVGYPT-AKHQQVIKEKGPSCIHRLTFRPLRN 206 + F+ G A ++ +K+ G ++++ +N Sbjct: 240 FKFEKGAGSKVDACGKEFVKKFGKEKLYQVAKLHFKN 276 >gi|320100359|ref|YP_004175951.1| ribonuclease HII [Desulfurococcus mucosus DSM 2162] gi|319752711|gb|ADV64469.1| ribonuclease HII [Desulfurococcus mucosus DSM 2162] Length = 255 Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 31/180 (17%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELYEKITSSAIIS 82 G+DE GRG G +V+ +I P+ + G+ DSK + R EL+ +I SS + Sbjct: 10 GVDEAGRGPFVGDMVIVGVI-GPSRVFESLVSIGLKDSKALEPVARRELFWEILSSNVDI 68 Query: 83 ISSASHQY-IDKHNIHKATLDAIYHAVENL------QVIPRSAL---ID-----GRSIPE 127 ++ + ID+ N+++ I ++ L + P ++L +D G S+ E Sbjct: 69 VAWLVSPFTIDRGNMNELEYIRICRILKLLSYSRLARSKPGNSLRIYVDEVKGYGESVRE 128 Query: 128 ---DLPCQAFAVI---KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + + V+ + D+ +++AAS+IAKV RDR + + K G GYP+ Sbjct: 129 CAMRIYGEHVEVVMEPEADARYPAVSAASVIAKVIRDRNIDVLGKITGGLG----SGYPS 184 >gi|195470258|ref|XP_002087425.1| GE16128 [Drosophila yakuba] gi|194173526|gb|EDW87137.1| GE16128 [Drosophila yakuba] Length = 347 Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 39/188 (20%) Query: 28 GIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS----- 78 G+DE GRG + GP+V ++ L+ G DSK+++ +KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESKKALEDLGCADSKQLTEEKRDIIFNDINTKDYATS 133 Query: 79 ----AIISIS----SASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127 A+ IS S S K ++++ ++D+ ++ + V +D PE Sbjct: 134 CIGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193 Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP------DYG 172 P V K DS ++AASI AKVTRD +++ K+P D Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--KFPEGLVIKDNA 251 Query: 173 FDSHVGYP 180 F S GYP Sbjct: 252 FGS--GYP 257 >gi|223967503|emb|CAR93482.1| CG13690-PA [Drosophila melanogaster] Length = 347 Score = 39.3 bits (90), Expect = 0.36, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 29/165 (17%) Query: 28 GIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS----- 78 G+DE GRG + GP+V ++ L+ N G DSK+++ KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINAKEYATS 133 Query: 79 ----AIISIS----SASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127 A+ IS S S K ++++ ++D+ ++ + V +D PE Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193 Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRI 163 P V K DS ++AASI AKVTRD +++ Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKV 238 >gi|328956934|ref|YP_004374320.1| ribonuclease HIII [Carnobacterium sp. 17-4] gi|328673258|gb|AEB29304.1| ribonuclease HIII [Carnobacterium sp. 17-4] Length = 332 Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 67/162 (41%), Gaps = 38/162 (23%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 W V G DEVG G+ GP+ V A D + + G+ DSK + +I A Sbjct: 115 WSVIGSDEVGTGSYFGPLTVVAAYADHSQLALLKELGVRDSKDMKD-------PEIIRVA 167 Query: 80 IISISSASHQYI----DKHNIHKATL-----------DAIYHAVENLQ-VIPRSALIDGR 123 I+ H + +K+N + T+ A+ H +E + P LID Sbjct: 168 KDLITFLPHSLLNVMPEKYNTIQPTMTQGKMKAILHNQALGHVLEKISPQKPDGILIDQF 227 Query: 124 SIP-------EDLPCQ----AFAVIKGDSISLSIAAASIIAK 154 +P D P Q + KG+ LS+AAASIIA+ Sbjct: 228 ELPATYFKHINDQPKQIKESVYFQTKGEGHHLSVAAASIIAR 269 >gi|282890959|ref|ZP_06299473.1| hypothetical protein pah_c032o041 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499174|gb|EFB41479.1| hypothetical protein pah_c032o041 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 323 Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 10/78 (12%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDS 60 + PE+ H ++N+ GIDE G+G GP+ +A + + +I G+ DS Sbjct: 103 TYPEQTH------TTQENLLGRIGIDESGKGDFFGPLCIAGVFAEGQDILRLKALGVRDS 156 Query: 61 KKISHKKREELYEKITSS 78 K I+ K ++ KI S Sbjct: 157 KTITDKDILKISAKIRES 174 >gi|223967505|emb|CAR93483.1| CG13690-PA [Drosophila melanogaster] Length = 347 Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 29/165 (17%) Query: 28 GIDEVGRGALAGPVV--VAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS----- 78 G+DE GRG + GP+V ++ L+ N G DSK+++ KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEVLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 79 ----AIISIS----SASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127 A+ IS S S K ++++ ++D+ ++ + V +D PE Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193 Query: 128 D--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRI 163 P V K DS ++AASI AKVTRD +++ Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKV 238 >gi|295112808|emb|CBL31445.1| ribonuclease HIII [Enterococcus sp. 7L76] gi|315145573|gb|EFT89589.1| ribonuclease HIII [Enterococcus faecalis TX2141] gi|315160341|gb|EFU04358.1| ribonuclease HIII [Enterococcus faecalis TX0645] Length = 305 Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64 W V G DEVG G+ GPV V A +D + I G+ DSK+++ Sbjct: 91 WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKSLGVRDSKELT 135 >gi|257085473|ref|ZP_05579834.1| ribonuclease HIII [Enterococcus faecalis Fly1] gi|256993503|gb|EEU80805.1| ribonuclease HIII [Enterococcus faecalis Fly1] Length = 306 Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKIS 64 W V G DEVG G+ GPV V A +D + I G+ DSK+++ Sbjct: 92 WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 136 >gi|315174353|gb|EFU18370.1| ribonuclease HIII [Enterococcus faecalis TX1346] Length = 305 Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64 W V G DEVG G+ GPV V A +D + I G+ DSK+++ Sbjct: 91 WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 135 >gi|315027498|gb|EFT39430.1| ribonuclease HIII [Enterococcus faecalis TX2137] Length = 305 Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64 W V G DEVG G+ GPV V A +D + I G+ DSK+++ Sbjct: 91 WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 135 >gi|257086614|ref|ZP_05580975.1| ribonuclease HIII [Enterococcus faecalis D6] gi|256994644|gb|EEU81946.1| ribonuclease HIII [Enterococcus faecalis D6] Length = 306 Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64 W V G DEVG G+ GPV V A +D + I G+ DSK+++ Sbjct: 92 WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 136 >gi|227518526|ref|ZP_03948575.1| ribonuclease HIII [Enterococcus faecalis TX0104] gi|227074008|gb|EEI11971.1| ribonuclease HIII [Enterococcus faecalis TX0104] Length = 305 Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64 W V G DEVG G+ GPV V A +D + I G+ DSK+++ Sbjct: 91 WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 135 >gi|310794509|gb|EFQ29970.1| ribonuclease HII [Glomerella graminicola M1.001] Length = 344 Score = 38.9 bits (89), Expect = 0.46, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 81/196 (41%), Gaps = 46/196 (23%) Query: 28 GIDEVGRGALAGPVVVAAIILD-PNNIPF-----GINDSKKISHKKREELYEKITS---- 77 G+DE GRG + GP+V L P + P +DSK ++ R +L + + Sbjct: 70 GVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRETHHFDDSKVLTPAVRSQLMAALCTAGSD 129 Query: 78 ---SAIISISSASHQYID--------KHNIHKATLDAIYHAVE-------NLQVIPRSAL 119 S +IS+ S + I +N++ +DA ++ N+Q I Sbjct: 130 LAESCGFAISALSARDISSGMMRPGANYNLNAQAMDATVELIKGVFAQGVNIQEI----Y 185 Query: 120 IDGRSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK-KYP 169 +D P P V K DS+ ++AAS+ AKVTRD + + +K + P Sbjct: 186 VDTVGQPAAYQAKLQRFFPATKITVAKKADSLYPCVSAASVCAKVTRDAALEVLYKARAP 245 Query: 170 DY----GFDSHVGYPT 181 + G GYP+ Sbjct: 246 ESVVEEGMAWGSGYPS 261 >gi|255973022|ref|ZP_05423608.1| ribonuclease HIII [Enterococcus faecalis T1] gi|257422845|ref|ZP_05599835.1| ribonuclease HIII [Enterococcus faecalis X98] gi|255964040|gb|EET96516.1| ribonuclease HIII [Enterococcus faecalis T1] gi|257164669|gb|EEU94629.1| ribonuclease HIII [Enterococcus faecalis X98] Length = 306 Score = 38.9 bits (89), Expect = 0.46, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64 W V G DEVG G+ GPV V A +D + I G+ DSK+++ Sbjct: 92 WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 136 >gi|229550247|ref|ZP_04438972.1| ribonuclease HIII [Enterococcus faecalis ATCC 29200] gi|300859668|ref|ZP_07105756.1| ribonuclease HIII [Enterococcus faecalis TUSoD Ef11] gi|307277609|ref|ZP_07558701.1| ribonuclease HIII [Enterococcus faecalis TX2134] gi|312952263|ref|ZP_07771138.1| ribonuclease HIII [Enterococcus faecalis TX0102] gi|229304685|gb|EEN70681.1| ribonuclease HIII [Enterococcus faecalis ATCC 29200] gi|300850486|gb|EFK78235.1| ribonuclease HIII [Enterococcus faecalis TUSoD Ef11] gi|306505874|gb|EFM75052.1| ribonuclease HIII [Enterococcus faecalis TX2134] gi|310629647|gb|EFQ12930.1| ribonuclease HIII [Enterococcus faecalis TX0102] gi|315153226|gb|EFT97242.1| ribonuclease HIII [Enterococcus faecalis TX0031] gi|315155995|gb|EFU00012.1| ribonuclease HIII [Enterococcus faecalis TX0043] gi|315157833|gb|EFU01850.1| ribonuclease HIII [Enterococcus faecalis TX0312] gi|315166764|gb|EFU10781.1| ribonuclease HIII [Enterococcus faecalis TX1341] Length = 305 Score = 38.9 bits (89), Expect = 0.46, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64 W V G DEVG G+ GPV V A +D + I G+ DSK+++ Sbjct: 91 WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 135 >gi|315151447|gb|EFT95463.1| ribonuclease HIII [Enterococcus faecalis TX0012] Length = 305 Score = 38.9 bits (89), Expect = 0.46, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKIS 64 W V G DEVG G+ GPV V A +D + I G+ DSK+++ Sbjct: 91 WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 135 >gi|257419087|ref|ZP_05596081.1| ribonuclease HIII [Enterococcus faecalis T11] gi|257160915|gb|EEU90875.1| ribonuclease HIII [Enterococcus faecalis T11] Length = 306 Score = 38.9 bits (89), Expect = 0.46, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64 W V G DEVG G+ GPV V A +D + I G+ DSK+++ Sbjct: 92 WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKSLGVRDSKELT 136 >gi|315169945|gb|EFU13962.1| ribonuclease HIII [Enterococcus faecalis TX1342] Length = 305 Score = 38.9 bits (89), Expect = 0.47, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64 W V G DEVG G+ GPV V A +D + I G+ DSK+++ Sbjct: 91 WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 135 >gi|256965338|ref|ZP_05569509.1| ribonuclease HIII [Enterococcus faecalis HIP11704] gi|257089671|ref|ZP_05584032.1| ribonuclease HIII [Enterococcus faecalis CH188] gi|256955834|gb|EEU72466.1| ribonuclease HIII [Enterococcus faecalis HIP11704] gi|256998483|gb|EEU85003.1| ribonuclease HIII [Enterococcus faecalis CH188] Length = 306 Score = 38.9 bits (89), Expect = 0.47, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64 W V G DEVG G+ GPV V A +D + I G+ DSK+++ Sbjct: 92 WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 136 >gi|307273446|ref|ZP_07554691.1| ribonuclease HIII [Enterococcus faecalis TX0855] gi|307288434|ref|ZP_07568422.1| ribonuclease HIII [Enterococcus faecalis TX0109] gi|312904016|ref|ZP_07763184.1| ribonuclease HIII [Enterococcus faecalis TX0635] gi|306500605|gb|EFM69934.1| ribonuclease HIII [Enterococcus faecalis TX0109] gi|306509973|gb|EFM78998.1| ribonuclease HIII [Enterococcus faecalis TX0855] gi|310632492|gb|EFQ15775.1| ribonuclease HIII [Enterococcus faecalis TX0635] gi|315147746|gb|EFT91762.1| ribonuclease HIII [Enterococcus faecalis TX4244] gi|315165480|gb|EFU09497.1| ribonuclease HIII [Enterococcus faecalis TX1302] gi|315578363|gb|EFU90554.1| ribonuclease HIII [Enterococcus faecalis TX0630] Length = 305 Score = 38.9 bits (89), Expect = 0.47, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64 W V G DEVG G+ GPV V A +D + I G+ DSK+++ Sbjct: 91 WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 135 >gi|29375836|ref|NP_814990.1| ribonuclease HIII [Enterococcus faecalis V583] gi|227553052|ref|ZP_03983101.1| ribonuclease HIII [Enterococcus faecalis HH22] gi|81585389|sp|Q835V5|RNH3_ENTFA RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|29343298|gb|AAO81060.1| ribonuclease HIII [Enterococcus faecalis V583] gi|227177795|gb|EEI58767.1| ribonuclease HIII [Enterococcus faecalis HH22] gi|315575679|gb|EFU87870.1| ribonuclease HIII [Enterococcus faecalis TX0309B] gi|315579877|gb|EFU92068.1| ribonuclease HIII [Enterococcus faecalis TX0309A] Length = 305 Score = 38.9 bits (89), Expect = 0.47, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64 W V G DEVG G+ GPV V A +D + I G+ DSK+++ Sbjct: 91 WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKSLGVRDSKELT 135 >gi|307279081|ref|ZP_07560139.1| ribonuclease HIII [Enterococcus faecalis TX0860] gi|306504206|gb|EFM73418.1| ribonuclease HIII [Enterococcus faecalis TX0860] Length = 305 Score = 38.9 bits (89), Expect = 0.48, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64 W V G DEVG G+ GPV V A +D + I G+ DSK+++ Sbjct: 91 WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 135 >gi|256958755|ref|ZP_05562926.1| ribonuclease HIII [Enterococcus faecalis DS5] gi|257078784|ref|ZP_05573145.1| ribonuclease HIII [Enterococcus faecalis JH1] gi|256949251|gb|EEU65883.1| ribonuclease HIII [Enterococcus faecalis DS5] gi|256986814|gb|EEU74116.1| ribonuclease HIII [Enterococcus faecalis JH1] Length = 306 Score = 38.9 bits (89), Expect = 0.48, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64 W V G DEVG G+ GPV V A +D + I G+ DSK+++ Sbjct: 92 WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 136 >gi|255976061|ref|ZP_05426647.1| ribonuclease HIII [Enterococcus faecalis T2] gi|255968933|gb|EET99555.1| ribonuclease HIII [Enterococcus faecalis T2] Length = 306 Score = 38.9 bits (89), Expect = 0.48, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64 W V G DEVG G+ GPV V A +D + I G+ DSK+++ Sbjct: 92 WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 136 >gi|294780117|ref|ZP_06745490.1| ribonuclease HIII [Enterococcus faecalis PC1.1] gi|307268535|ref|ZP_07549908.1| ribonuclease HIII [Enterococcus faecalis TX4248] gi|294452792|gb|EFG21221.1| ribonuclease HIII [Enterococcus faecalis PC1.1] gi|306515131|gb|EFM83673.1| ribonuclease HIII [Enterococcus faecalis TX4248] gi|315034079|gb|EFT46011.1| ribonuclease HIII [Enterococcus faecalis TX0017] gi|315036747|gb|EFT48679.1| ribonuclease HIII [Enterococcus faecalis TX0027] gi|323480498|gb|ADX79937.1| ribonuclease HIII [Enterococcus faecalis 62] Length = 305 Score = 38.9 bits (89), Expect = 0.48, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64 W V G DEVG G+ GPV V A +D + I G+ DSK+++ Sbjct: 91 WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 135 >gi|256962140|ref|ZP_05566311.1| ribonuclease HIII [Enterococcus faecalis Merz96] gi|256952636|gb|EEU69268.1| ribonuclease HIII [Enterococcus faecalis Merz96] Length = 306 Score = 38.9 bits (89), Expect = 0.48, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64 W V G DEVG G+ GPV V A +D + I G+ DSK+++ Sbjct: 92 WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 136 >gi|256618846|ref|ZP_05475692.1| ribonuclease HIII [Enterococcus faecalis ATCC 4200] gi|256598373|gb|EEU17549.1| ribonuclease HIII [Enterococcus faecalis ATCC 4200] Length = 306 Score = 38.9 bits (89), Expect = 0.48, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64 W V G DEVG G+ GPV V A +D + I G+ DSK+++ Sbjct: 92 WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 136 >gi|229546057|ref|ZP_04434782.1| ribonuclease HIII [Enterococcus faecalis TX1322] gi|256852909|ref|ZP_05558279.1| ribonuclease HIII [Enterococcus faecalis T8] gi|307291247|ref|ZP_07571131.1| ribonuclease HIII [Enterococcus faecalis TX0411] gi|229308830|gb|EEN74817.1| ribonuclease HIII [Enterococcus faecalis TX1322] gi|256711368|gb|EEU26406.1| ribonuclease HIII [Enterococcus faecalis T8] gi|306497478|gb|EFM67011.1| ribonuclease HIII [Enterococcus faecalis TX0411] gi|315030923|gb|EFT42855.1| ribonuclease HIII [Enterococcus faecalis TX4000] Length = 305 Score = 38.9 bits (89), Expect = 0.48, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64 W V G DEVG G+ GPV V A +D + I G+ DSK+++ Sbjct: 91 WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 135 >gi|315658551|ref|ZP_07911423.1| ribonuclease HIII [Staphylococcus lugdunensis M23590] gi|315496880|gb|EFU85203.1| ribonuclease HIII [Staphylococcus lugdunensis M23590] Length = 310 Score = 38.9 bits (89), Expect = 0.48, Method: Compositional matrix adjust. Identities = 50/211 (23%), Positives = 99/211 (46%), Gaps = 32/211 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-- 77 + G DE G G GP+ V A + +++ G++DSKK++ K +L E++ + Sbjct: 91 YDCIGSDEAGSGDYFGPLTVCAAYVTQSHVAILKTLGVDDSKKLTDTKIIDLAEQLVTFI 150 Query: 78 -SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL--QVIPRSA---LIDGRSIPEDL 129 +++++ + + + + A+ H A++N+ ++ P + +ID + E Sbjct: 151 PHSLLTLDNIKYNERQALGWSQVKMKAVLHNEAIKNVTQKIHPDNIDYIVIDQFAQREVY 210 Query: 130 PCQAFAVI----------KGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 A + + KG+S SL+IAAASII++ D+L R H + P G + Sbjct: 211 QHYALSALPFPEKTKFETKGESKSLAIAAASIISRYAFVKYMDQLARKMHCEIPK-GAGN 269 Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 V AK +I + G + + ++ + +N Sbjct: 270 KVDLVAAK---IIDKSGINKLDSISKKHFKN 297 >gi|293383165|ref|ZP_06629082.1| ribonuclease HIII [Enterococcus faecalis R712] gi|293387681|ref|ZP_06632226.1| ribonuclease HIII [Enterococcus faecalis S613] gi|312899345|ref|ZP_07758678.1| ribonuclease HIII [Enterococcus faecalis TX0470] gi|312907246|ref|ZP_07766237.1| ribonuclease HIII [Enterococcus faecalis DAPTO 512] gi|312909864|ref|ZP_07768712.1| ribonuclease HIII [Enterococcus faecalis DAPTO 516] gi|291079504|gb|EFE16868.1| ribonuclease HIII [Enterococcus faecalis R712] gi|291082870|gb|EFE19833.1| ribonuclease HIII [Enterococcus faecalis S613] gi|310626274|gb|EFQ09557.1| ribonuclease HIII [Enterococcus faecalis DAPTO 512] gi|311289822|gb|EFQ68378.1| ribonuclease HIII [Enterococcus faecalis DAPTO 516] gi|311293496|gb|EFQ72052.1| ribonuclease HIII [Enterococcus faecalis TX0470] gi|327534888|gb|AEA93722.1| ribonuclease H [Enterococcus faecalis OG1RF] Length = 305 Score = 38.9 bits (89), Expect = 0.48, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64 W V G DEVG G+ GPV V A +D + I G+ DSK+++ Sbjct: 91 WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 135 >gi|289551055|ref|YP_003471959.1| Ribonuclease HIII [Staphylococcus lugdunensis HKU09-01] gi|289180587|gb|ADC87832.1| Ribonuclease HIII [Staphylococcus lugdunensis HKU09-01] Length = 310 Score = 38.9 bits (89), Expect = 0.48, Method: Compositional matrix adjust. Identities = 50/211 (23%), Positives = 99/211 (46%), Gaps = 32/211 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-- 77 + G DE G G GP+ V A + +++ G++DSKK++ K +L E++ + Sbjct: 91 YDCIGSDEAGSGDYFGPLTVCAAYVTQSHVAILKTLGVDDSKKLTDTKIIDLAEQLVTFI 150 Query: 78 -SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL--QVIPRSA---LIDGRSIPEDL 129 +++++ + + + + A+ H A++N+ ++ P + +ID + E Sbjct: 151 PHSLLTLDNIKYNERQALGWSQVKMKAVLHNEAIKNVTQKIHPDNIDYIVIDQFAQREVY 210 Query: 130 PCQAFAVI----------KGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDS 175 A + + KG+S SL+IAAASII++ D+L R H + P G + Sbjct: 211 QHYALSALPFPEKTKFETKGESKSLAIAAASIISRYAFVKYMDQLARKMHCEIPK-GAGN 269 Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 V AK +I + G + + ++ + +N Sbjct: 270 KVDLVAAK---IIDKSGINKLDSISKKHFKN 297 >gi|257415885|ref|ZP_05592879.1| ribonuclease HIII [Enterococcus faecalis AR01/DG] gi|257157713|gb|EEU87673.1| ribonuclease HIII [Enterococcus faecalis ARO1/DG] Length = 306 Score = 38.9 bits (89), Expect = 0.48, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64 W V G DEVG G+ GPV V A +D + I G+ DSK+++ Sbjct: 92 WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 136 >gi|254443118|ref|ZP_05056594.1| ribonuclease HIII [Verrucomicrobiae bacterium DG1235] gi|198257426|gb|EDY81734.1| ribonuclease HIII [Verrucomicrobiae bacterium DG1235] Length = 334 Score = 38.9 bits (89), Expect = 0.48, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS 82 AG+DE G+G L GPVV A +I D +I GI DSK I+ + +L + I + +S Sbjct: 109 AGMDESGKGDLFGPVVTACVIADKVHIDQWVKDGIRDSKTITDSRILKLDKIIRGTKGVS 168 Query: 83 ISS 85 + + Sbjct: 169 VET 171 >gi|112490233|pdb|2D0A|A Chain A, Crystal Structure Of Bst-Rnase Hiii gi|112490235|pdb|2D0B|A Chain A, Crystal Structure Of Bst-Rnase Hiii In Complex With Mg2+ gi|112490237|pdb|2D0C|A Chain A, Crystal Structure Of Bst-Rnase Hiii In Complex With Mn2+ gi|47522551|dbj|BAD20196.1| ribonuclease HIII [Geobacillus stearothermophilus] Length = 310 Score = 38.9 bits (89), Expect = 0.48, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 33/156 (21%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS---AI 80 G DEVG G GP+VVAA +D +I G+ DSK+++ + + + I + A+ Sbjct: 95 GSDEVGTGDYFGPIVVAAAYVDRPHIAKIAALGVKDSKQLNDEAIKRIAPAIMETVPHAV 154 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVI-------PRSALID------------ 121 + + + + + + + A+ H ++++ P + +ID Sbjct: 155 TVLDNPQYNRWQRSGMPQTKMKALLHNRTLVKLVDAIAPAEPEAIIIDEFLKRDSYFRYL 214 Query: 122 ---GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 R I E + C + K +S+ +S+AAASIIA+ Sbjct: 215 SDEDRIIRERVHC----LPKAESVHVSVAAASIIAR 246 >gi|256762264|ref|ZP_05502844.1| ribonuclease HIII [Enterococcus faecalis T3] gi|256683515|gb|EEU23210.1| ribonuclease HIII [Enterococcus faecalis T3] Length = 306 Score = 38.9 bits (89), Expect = 0.49, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64 W V G DEVG G+ GPV V A +D + I G+ DSK+++ Sbjct: 92 WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 136 >gi|149012155|ref|ZP_01833264.1| ribonuclease HIII [Streptococcus pneumoniae SP19-BS75] gi|147763757|gb|EDK70691.1| ribonuclease HIII [Streptococcus pneumoniae SP19-BS75] Length = 293 Score = 38.9 bits (89), Expect = 0.50, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 10/93 (10%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKK 67 ++L R +N+ P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K Sbjct: 67 YQLVEENRGQNL-PLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQK 125 Query: 68 REE----LYEKITSSAIISISSASHQYI-DKHN 95 + L EKI A++ S ++ I D++N Sbjct: 126 IRQIAPILKEKIQHQALLLSPSKYNEVIGDRYN 158 >gi|257082772|ref|ZP_05577133.1| ribonuclease HIII [Enterococcus faecalis E1Sol] gi|256990802|gb|EEU78104.1| ribonuclease HIII [Enterococcus faecalis E1Sol] Length = 306 Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKIS 64 W V G DEVG G+ GPV V A +D + I G+ DSK+++ Sbjct: 92 WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 136 >gi|329577099|gb|EGG58572.1| ribonuclease HIII [Enterococcus faecalis TX1467] Length = 289 Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKIS 64 W V G DEVG G+ GPV V A +D + I G+ DSK+++ Sbjct: 75 WSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELT 119 >gi|225858257|ref|YP_002739767.1| ribonuclease HIII [Streptococcus pneumoniae 70585] gi|254808014|sp|C1C5E1|RNH3_STRP7 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|225720842|gb|ACO16696.1| ribonuclease hiii [Streptococcus pneumoniae 70585] Length = 293 Score = 38.5 bits (88), Expect = 0.63, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVATFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|223936443|ref|ZP_03628355.1| ribonuclease HIII [bacterium Ellin514] gi|223894961|gb|EEF61410.1| ribonuclease HIII [bacterium Ellin514] Length = 329 Score = 38.5 bits (88), Expect = 0.64, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 37/185 (20%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKR-EELYEKITS-- 77 P G+DE G+G GP+ VA + ++ + + GI DSK IS K+ EL E I Sbjct: 93 PRLGVDESGKGDFFGPLCVAGVYVNESVVRAWKEAGIRDSKNISSDKKIRELAELIRETP 152 Query: 78 ---SAIISISSASHQYIDKHNIHKATLDAIYHA--VENL----QVI---PRSALIDGRSI 125 + ++ I + ++ + TL A HA +ENL Q++ P A+ D + Sbjct: 153 GCVTTVVPIGNEAYNRLYAKMRSVNTLLAWGHARVIENLMGRQQMMKPPPIRAISDQFAA 212 Query: 126 PEDLPCQAFAVIKGDSISL----------SIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 +D +A + G + L ++AAASI+A RD + YG Sbjct: 213 SKDTVAKALMNL-GRQVELVQRHKAEEDIAVAAASILA---RDEFVSRLGTLEKQYG--- 265 Query: 176 HVGYP 180 +G+P Sbjct: 266 -MGFP 269 >gi|229823968|ref|ZP_04450037.1| hypothetical protein GCWU000282_01272 [Catonella morbi ATCC 51271] gi|229786322|gb|EEP22436.1| hypothetical protein GCWU000282_01272 [Catonella morbi ATCC 51271] Length = 319 Score = 38.5 bits (88), Expect = 0.64, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 31/160 (19%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISH--------KKREEL 71 W + G DEVG G+ G + V A+ LD + G+ DSK ++ K R+ L Sbjct: 98 WTIIGSDEVGNGSYFGALTVCAVYLDAGDRAKIEGLGVKDSKLLTDAQILDLAPKLRQVL 157 Query: 72 YEKITSSAIISISSASHQY------IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 ++T + + A+ + HN L A A + L + + LID + Sbjct: 158 THELTICSPAKYNEANKTRNANAIKVSLHNFTIQKLLAKLSARQKLAL--QGILIDEFTS 215 Query: 126 PED-----------LPCQAFAVIKGDSISLSIAAASIIAK 154 P++ L + KG+S L++A ASIIA+ Sbjct: 216 PQNYFNYLKKEAHPLTKGLYFAEKGESAHLAVACASIIAR 255 >gi|154318955|ref|XP_001558795.1| hypothetical protein BC1G_02429 [Botryotinia fuckeliana B05.10] gi|150856860|gb|EDN32052.1| hypothetical protein BC1G_02429 [Botryotinia fuckeliana B05.10] Length = 1493 Score = 38.1 bits (87), Expect = 0.69, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 75/183 (40%), Gaps = 32/183 (17%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI------PFGINDSKKISHKKREELYEKITSS--- 78 GIDE GRG + GP+V L +DSK ++ R EL EK+ + Sbjct: 70 GIDEAGRGPVLGPMVYGLFYLPLPLSDPLLRNTHHFDDSKVLTPTVRSELMEKLCTPGSD 129 Query: 79 -------AIISISS----ASHQYIDKHNIHKATLD---AIYHAVENLQVIPRSALIDG-- 122 A+ +S+ A+ +N++ +D A+ V + V + ID Sbjct: 130 LYTQCGWAVDVMSARDIGANMMKPATYNLNAQAMDSTIALIQGVMDKGVNVKEIYIDALG 189 Query: 123 ------RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 + + P V K DS+ ++AAS+ AKVTRD + ++ Y + D Sbjct: 190 NTVTYQKKLERIFPTAQITVAKKADSLYPCVSAASVCAKVTRDAALESLYESYMNKDGDQ 249 Query: 176 HVG 178 +G Sbjct: 250 KMG 252 >gi|218905781|ref|YP_002453615.1| ribonuclease HIII [Bacillus cereus AH820] gi|218538277|gb|ACK90675.1| ribonuclease HIII [Bacillus cereus AH820] Length = 177 Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust. Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 16/107 (14%) Query: 5 SIPERPHFELEAMVREKNMWP--------VAGIDEVGRGALAGPVVVAAIILDPNNIP-- 54 ++P+ P ++ V P + G DEVG G GP+ V A+ +D IP Sbjct: 68 TVPQTPKIAVKKSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLL 127 Query: 55 --FGINDSKKISHKK----REELYEKITSSAIISISSASHQYIDKHN 95 G+ DSK ++ ++ ++L + S+++ + ++ DK N Sbjct: 128 KELGVKDSKNLNDEQITAIAKQLLHVVPYSSLVLHNEKYNELFDKGN 174 >gi|326431468|gb|EGD77038.1| ribonuclease [Salpingoeca sp. ATCC 50818] Length = 421 Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust. Identities = 43/187 (22%), Positives = 75/187 (40%), Gaps = 33/187 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAII----LDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 + G+DE GRG + GP+V ++ G DSK + ++RE L+ ++ S ++ Sbjct: 127 ILGVDEAGRGPVCGPMVYGVAFAPKPMEKTLKNMGFTDSKVVKEEERERLFTEMKSGSLH 186 Query: 81 --------------ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 IS + Q + + T + + V + +D ++ Sbjct: 187 GKMGWKVHSLSPNTISTGMLARQKYSLNELSHDTCIGLIRRCLDQGVNLEAVYVD--TVG 244 Query: 127 EDLPCQA-----FAVI------KGDSISLSIAAASIIAKVTRDRLMRIA-HKKYPDYGFD 174 D QA F + K DS + ++AASI AKV RD ++ H + + Sbjct: 245 PDTVYQAKLQGIFPQLKITVSKKADSKYVIVSAASICAKVVRDHVLSAWRHPERIGANTE 304 Query: 175 SHVGYPT 181 GYP+ Sbjct: 305 YGCGYPS 311 >gi|309790298|ref|ZP_07684866.1| ribonuclease HIII [Oscillochloris trichoides DG6] gi|308227686|gb|EFO81346.1| ribonuclease HIII [Oscillochloris trichoides DG6] Length = 312 Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 25/150 (16%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS------ 77 G+DE G+G GP+VVAA+ +D G+ DSK + +L ++I Sbjct: 99 GMDESGKGDWYGPLVVAAVYVDAQTEATLQQAGVRDSKLVDQATLPKLVQRIEQLVPATA 158 Query: 78 --SAIISISSASHQYIDKHNI-------HKATLDAIYHAVENLQVI-----PRSALIDGR 123 +++ S + +Y + +N+ + T + A +V+ R+ +DG Sbjct: 159 RYVTVLAPSDYNRRYAESNNVNILLAELYAETATRVCQATGCKRVVCDQFAQRTERLDGT 218 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIA 153 LP + + ++ S+++AAASI+A Sbjct: 219 FTQAGLP-RPTQMHHAEAQSIAVAAASILA 247 >gi|323303245|gb|EGA57043.1| Rnh201p [Saccharomyces cerevisiae FostersB] Length = 307 Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 6/66 (9%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAI-----ILDPNNIP-FGINDSKKISHKKRE 69 A++ +K+ + GIDE GRG + GP+V A D IP + +DSKK++ R Sbjct: 25 ALLEQKDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIRR 84 Query: 70 ELYEKI 75 L+ KI Sbjct: 85 MLFSKI 90 >gi|256274456|gb|EEU09358.1| Rnh201p [Saccharomyces cerevisiae JAY291] Length = 307 Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 6/66 (9%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAI-----ILDPNNIP-FGINDSKKISHKKRE 69 A++ +K+ + GIDE GRG + GP+V A D IP + +DSKK++ R Sbjct: 25 ALLEQKDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIRR 84 Query: 70 ELYEKI 75 L+ KI Sbjct: 85 MLFSKI 90 >gi|300175420|emb|CBK20731.2| unnamed protein product [Blastocystis hominis] Length = 539 Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 7/87 (8%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG + GP+V AA + G +DSKK + +R+ + I + I Sbjct: 452 IVGIDEAGRGPVVGPMVYAAAYWAKSKNEEISNLGFDDSKKFTSGQRDGFRKTIDETGSI 511 Query: 82 S--ISSASHQYIDKHNIHKA-TLDAIY 105 I S S + I + + TLD+ Y Sbjct: 512 GYLIRSLSPKEISANMLQTYPTLDSDY 538 >gi|260946247|ref|XP_002617421.1| hypothetical protein CLUG_02865 [Clavispora lusitaniae ATCC 42720] gi|238849275|gb|EEQ38739.1| hypothetical protein CLUG_02865 [Clavispora lusitaniae ATCC 42720] Length = 345 Score = 38.1 bits (87), Expect = 0.77, Method: Compositional matrix adjust. Identities = 46/185 (24%), Positives = 74/185 (40%), Gaps = 38/185 (20%) Query: 11 HFELEAMVREKNMWPVA-GIDEVGRGALAGPVV--VAAIILDPNN---IPFGINDSKKIS 64 H E+ + E PV G+DE GRG + GP+V ++ + D + +G DSK + Sbjct: 57 HSEIPEAITEDPKGPVVLGVDEAGRGPVLGPMVYGISYCLRDYQDHLKKKYGFADSKTLK 116 Query: 65 HKKREELYEKIT----------------------SSAIISISSASHQYIDKHNIHKATLD 102 R+EL++ I S+ ++ + + Y H T+ Sbjct: 117 DSTRQELFQLIDNEKHELHKNVGWATCTMTAKDISNGMLRSALGAGSYNLNEQAHDTTIQ 176 Query: 103 AIYHAVENLQVIPRSALIDGRSIP--------EDLPCQAFAVI-KGDSISLSIAAASIIA 153 I + + V R +D P + P V K DSI ++ AS++A Sbjct: 177 LIKDVLLS-GVNVREIFVDTVGPPVSYQAKLKKHFPSIDITVTKKADSIYPIVSTASVVA 235 Query: 154 KVTRD 158 KVTRD Sbjct: 236 KVTRD 240 >gi|313889744|ref|ZP_07823386.1| ribonuclease HIII [Streptococcus pseudoporcinus SPIN 20026] gi|313121789|gb|EFR44886.1| ribonuclease HIII [Streptococcus pseudoporcinus SPIN 20026] Length = 305 Score = 38.1 bits (87), Expect = 0.78, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 5/50 (10%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKIS-HKKRE 69 P+ G DEVG G+ G + V A ++P++ P+ G+NDSK ++ HK R+ Sbjct: 88 PLIGSDEVGNGSYFGGLAVVASYVEPSDHPYLKELGVNDSKTLNDHKIRQ 137 >gi|125625302|ref|YP_001033785.1| ribonuclease HIII [Lactococcus lactis subsp. cremoris MG1363] gi|166226671|sp|A2RP65|RNH3_LACLM RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|124494110|emb|CAL99111.1| RnhA protein [Lactococcus lactis subsp. cremoris MG1363] gi|300072114|gb|ADJ61514.1| ribonuclease HIII [Lactococcus lactis subsp. cremoris NZ9000] Length = 292 Score = 38.1 bits (87), Expect = 0.78, Method: Compositional matrix adjust. Identities = 57/214 (26%), Positives = 93/214 (43%), Gaps = 36/214 (16%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKK---- 67 A V K + G DEVG G+ G ++V A + N++ F G+ DSKK++ +K Sbjct: 68 AQVVPKKQTNLIGTDEVGNGSYFGGLMVTASFVSDNHLKFLKEMGVADSKKLTDEKICQI 127 Query: 68 REELYEKITSSAII--------SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 +L E+I A++ I+S + K +H AIY + L P S + Sbjct: 128 APKLIEEIPHVALVVEPEKYNEVIASGYNAVSIKVALHN---QAIYLLEKQLGSQPESIV 184 Query: 120 IDGR----------SIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 ID S ++ P ++ K + L++A +SII +R + + K Sbjct: 185 IDAFTTEANYKKYVSAEKNHPLTNITLLTKAEDQFLAVAVSSII---SRYKFLENLKKLS 241 Query: 169 PDYGFD--SHVGYPTAK-HQQVIKEKGPSCIHRL 199 + GF S G + K Q+IK KG ++ L Sbjct: 242 KESGFTLPSGAGNLSDKVAAQIIKSKGIDALNHL 275 >gi|73916752|gb|AAZ93244.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 38.1 bits (87), Expect = 0.83, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|73916702|gb|AAZ93219.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 38.1 bits (87), Expect = 0.83, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|73662964|ref|YP_301745.1| ribonuclease HIII [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642317|sp|Q49WQ7|RNH3_STAS1 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|72495479|dbj|BAE18800.1| putative ribonuclease HIII [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 310 Score = 38.1 bits (87), Expect = 0.84, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 N + G DE G G GP+ V A + N+ G++DSKK++ K EL E++ + Sbjct: 88 NQFQCIGSDEAGSGDYFGPLTVCAAYVSHKNVQILKALGVDDSKKLTDTKIVELAEQLVT 147 >gi|325969836|ref|YP_004246028.1| ribonuclease HII [Vulcanisaeta moutnovskia 768-28] gi|323709039|gb|ADY02526.1| ribonuclease HII [Vulcanisaeta moutnovskia 768-28] Length = 198 Score = 38.1 bits (87), Expect = 0.85, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 36/152 (23%) Query: 55 FGINDSKKISHKKREELYEKITSSAIISISSAS-------HQYIDKHNIH----KATLDA 103 G+ DSK++S + R L+ I +I++ +Y++ + ++ + T+ Sbjct: 17 IGVKDSKELSPESRSRLF--IILKSILNYIDYEIIEPVIIDRYVNMNALNILEVEVTIKL 74 Query: 104 IYHAVENLQVIPRSALIDGRSIPEDLP--------------CQAFAVIKGDSISLSIAAA 149 I A+ N+QV + ID P+ P A+ K D + ++AA Sbjct: 75 INKALSNIQV--HTIYIDS---PDPKPERFRDMIMERVGGNVNVIAMNKADKLIPVVSAA 129 Query: 150 SIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 SI+AKV RD ++ H+++ D+G GYP+ Sbjct: 130 SIVAKVVRDSIIERLHREFGDFG----SGYPS 157 >gi|168482640|ref|ZP_02707592.1| ribonuclease hiii [Streptococcus pneumoniae CDC1873-00] gi|172043660|gb|EDT51706.1| ribonuclease hiii [Streptococcus pneumoniae CDC1873-00] gi|332203574|gb|EGJ17641.1| ribonuclease HIII [Streptococcus pneumoniae GA47368] Length = 293 Score = 38.1 bits (87), Expect = 0.85, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|148996807|ref|ZP_01824525.1| ribonuclease HIII [Streptococcus pneumoniae SP11-BS70] gi|168576877|ref|ZP_02722727.1| ribonuclease hiii [Streptococcus pneumoniae MLV-016] gi|307067052|ref|YP_003876018.1| ribonuclease HIII [Streptococcus pneumoniae AP200] gi|147757382|gb|EDK64421.1| ribonuclease HIII [Streptococcus pneumoniae SP11-BS70] gi|183577460|gb|EDT97988.1| ribonuclease hiii [Streptococcus pneumoniae MLV-016] gi|306408589|gb|ADM84016.1| Ribonuclease HIII [Streptococcus pneumoniae AP200] Length = 293 Score = 38.1 bits (87), Expect = 0.85, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|119196321|ref|XP_001248764.1| hypothetical protein CIMG_02535 [Coccidioides immitis RS] Length = 353 Score = 38.1 bits (87), Expect = 0.85, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 41/180 (22%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF---------GINDSKKISHKKREELYEKIT 76 V G+DE GRG + GP+V +A L +P NDSK ++ R L + Sbjct: 70 VLGVDEAGRGPVLGPMVYSAFYLP---MPLHHSLLAEEHQFNDSKVLTPGIRSNLMRLLC 126 Query: 77 S-------SAIISISSASHQYIDK---------HNIHKATLDA----IYHAVENLQVIPR 116 + S +I S + I +N++ +DA I VE V + Sbjct: 127 TPDHPLHESCGWAIKLLSARDISSGMQRPGAAVYNLNAQAMDATVEIIRGVVEERGVDVK 186 Query: 117 SALIDGRSIPED--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 ID P+ P V K D++ ++AAS+ AKVTRD + I +++ Sbjct: 187 EVYIDTIGNPQTYQKKLERIFPSLKITVAKKADALFPCVSAASVCAKVTRDAALEICYEE 246 >gi|73916788|gb|AAZ93262.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 38.1 bits (87), Expect = 0.85, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|73916714|gb|AAZ93225.1| RNase HII [Streptococcus pneumoniae] gi|73916734|gb|AAZ93235.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 38.1 bits (87), Expect = 0.85, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|194398393|ref|YP_002037085.1| ribonuclease HIII [Streptococcus pneumoniae G54] gi|226741382|sp|B5E7E5|RNH3_STRP4 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|194358060|gb|ACF56508.1| ribonuclease HIII [Streptococcus pneumoniae G54] gi|332204430|gb|EGJ18495.1| ribonuclease HIII [Streptococcus pneumoniae GA47901] Length = 293 Score = 38.1 bits (87), Expect = 0.86, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|168494560|ref|ZP_02718703.1| ribonuclease hiii [Streptococcus pneumoniae CDC3059-06] gi|307126617|ref|YP_003878648.1| ribonuclease hiii [Streptococcus pneumoniae 670-6B] gi|183575525|gb|EDT96053.1| ribonuclease hiii [Streptococcus pneumoniae CDC3059-06] gi|306483679|gb|ADM90548.1| ribonuclease hiii [Streptococcus pneumoniae 670-6B] Length = 293 Score = 38.1 bits (87), Expect = 0.86, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|73916708|gb|AAZ93222.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 38.1 bits (87), Expect = 0.86, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|73916712|gb|AAZ93224.1| RNase HII [Streptococcus pneumoniae] gi|73916728|gb|AAZ93232.1| RNase HII [Streptococcus pneumoniae] gi|73916730|gb|AAZ93233.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 38.1 bits (87), Expect = 0.86, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|225853979|ref|YP_002735491.1| ribonuclease HIII [Streptococcus pneumoniae JJA] gi|254808017|sp|C1CCH0|RNH3_STRZJ RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|225722438|gb|ACO18291.1| ribonuclease hiii [Streptococcus pneumoniae JJA] Length = 293 Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|149023691|ref|ZP_01836171.1| ribonuclease HIII [Streptococcus pneumoniae SP23-BS72] gi|147929628|gb|EDK80620.1| ribonuclease HIII [Streptococcus pneumoniae SP23-BS72] Length = 293 Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|148983801|ref|ZP_01817120.1| ribonuclease HIII [Streptococcus pneumoniae SP3-BS71] gi|149003498|ref|ZP_01828372.1| ribonuclease HIII [Streptococcus pneumoniae SP14-BS69] gi|149008008|ref|ZP_01831565.1| ribonuclease HIII [Streptococcus pneumoniae SP18-BS74] gi|237650379|ref|ZP_04524631.1| ribonuclease HIII [Streptococcus pneumoniae CCRI 1974] gi|237822067|ref|ZP_04597912.1| ribonuclease HIII [Streptococcus pneumoniae CCRI 1974M2] gi|147758434|gb|EDK65433.1| ribonuclease HIII [Streptococcus pneumoniae SP14-BS69] gi|147760520|gb|EDK67496.1| ribonuclease HIII [Streptococcus pneumoniae SP18-BS74] gi|147923948|gb|EDK75060.1| ribonuclease HIII [Streptococcus pneumoniae SP3-BS71] gi|301799504|emb|CBW32051.1| ribonuclease HIII [Streptococcus pneumoniae OXC141] gi|332076846|gb|EGI87308.1| ribonuclease HIII [Streptococcus pneumoniae GA17545] gi|332077687|gb|EGI88148.1| ribonuclease HIII [Streptococcus pneumoniae GA41301] Length = 293 Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|15900322|ref|NP_344926.1| ribonuclease HIII [Streptococcus pneumoniae TIGR4] gi|111657623|ref|ZP_01408357.1| hypothetical protein SpneT_02001177 [Streptococcus pneumoniae TIGR4] gi|18314321|sp|O07874|RNH3_STRPN RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|14971871|gb|AAK74566.1| ribonuclease HIII [Streptococcus pneumoniae TIGR4] Length = 293 Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|303322466|ref|XP_003071226.1| ribonuclease H2 subunit A, putative [Coccidioides posadasii C735 delta SOWgp] gi|240110925|gb|EER29081.1| ribonuclease H2 subunit A, putative [Coccidioides posadasii C735 delta SOWgp] gi|320040565|gb|EFW22498.1| ribonuclease HI large subunit [Coccidioides posadasii str. Silveira] Length = 353 Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 41/180 (22%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF---------GINDSKKISHKKREELYEKIT 76 V G+DE GRG + GP+V +A L +P NDSK ++ R L + Sbjct: 70 VLGVDEAGRGPVLGPMVYSAFYLP---MPLHHSLLAEEHQFNDSKVLTPGIRSNLMRLLC 126 Query: 77 S-------SAIISISSASHQYIDK---------HNIHKATLDA----IYHAVENLQVIPR 116 + S +I S + I +N++ +DA I VE V + Sbjct: 127 TPDHPLHESCGWAIKLLSARDISSGMQRPGAAVYNLNAQAMDATVEIIRGVVEERGVDVK 186 Query: 117 SALIDGRSIPED--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 ID P+ P V K D++ ++AAS+ AKVTRD + I +++ Sbjct: 187 EVYIDTIGNPQTYQKKLERIFPSLKITVAKKADALFPCVSAASVCAKVTRDAALEICYEE 246 >gi|73916716|gb|AAZ93226.1| RNase HII [Streptococcus pneumoniae] gi|73916738|gb|AAZ93237.1| RNase HII [Streptococcus pneumoniae] gi|73916780|gb|AAZ93258.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|73916704|gb|AAZ93220.1| RNase HII [Streptococcus pneumoniae] gi|73916740|gb|AAZ93238.1| RNase HII [Streptococcus pneumoniae] gi|73916750|gb|AAZ93243.1| RNase HII [Streptococcus pneumoniae] gi|73916782|gb|AAZ93259.1| RNase HII [Streptococcus pneumoniae] gi|73916786|gb|AAZ93261.1| RNase HII [Streptococcus pneumoniae] gi|73916808|gb|AAZ93272.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|73916792|gb|AAZ93264.1| RNase HII [Streptococcus pneumoniae] gi|73916810|gb|AAZ93273.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|73916718|gb|AAZ93227.1| RNase HII [Streptococcus pneumoniae] gi|73916732|gb|AAZ93234.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|306825816|ref|ZP_07459155.1| ribonuclease HIII [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432177|gb|EFM35154.1| ribonuclease HIII [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 293 Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 +P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 FPMIGTDEVGNGSYFGALAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAII 81 A++ Sbjct: 138 QHQALL 143 >gi|258569747|ref|XP_002543677.1| conserved hypothetical protein [Uncinocarpus reesii 1704] gi|237903947|gb|EEP78348.1| conserved hypothetical protein [Uncinocarpus reesii 1704] Length = 352 Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 72/176 (40%), Gaps = 35/176 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG------INDSKKISHKKREELY------- 72 V G+DE GRG + GP+V +A L + NDSK ++ R L Sbjct: 69 VLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFNDSKVLTPGVRSNLMRLLCTPG 128 Query: 73 ---EKITSSAIISIS----SASHQY--IDKHNIHKATLDA----IYHAVENLQVIPRSAL 119 +K A+ +S SA Q +N++ +DA I VE V + Sbjct: 129 HSLQKSCGWAVKLLSARDISAGMQRPGAGMYNLNAQAMDATVEIIRGVVEERGVDVKEVY 188 Query: 120 IDGRSIPED--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHK 166 ID P+ P V K DS+ ++AAS+ AKVTRD + I ++ Sbjct: 189 IDTIGNPQSYQKKLEMIFPSLKITVAKKADSLFPCVSAASVCAKVTRDSALDICYE 244 >gi|182683372|ref|YP_001835119.1| ribonuclease HIII [Streptococcus pneumoniae CGSP14] gi|303255384|ref|ZP_07341450.1| ribonuclease HIII [Streptococcus pneumoniae BS455] gi|303259481|ref|ZP_07345458.1| ribonuclease HIII [Streptococcus pneumoniae SP-BS293] gi|303262344|ref|ZP_07348287.1| ribonuclease HIII [Streptococcus pneumoniae SP14-BS292] gi|303264762|ref|ZP_07350679.1| ribonuclease HIII [Streptococcus pneumoniae BS397] gi|303266601|ref|ZP_07352486.1| ribonuclease HIII [Streptococcus pneumoniae BS457] gi|303268834|ref|ZP_07354621.1| ribonuclease HIII [Streptococcus pneumoniae BS458] gi|238691129|sp|B2ILU9|RNH3_STRPS RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|73916724|gb|AAZ93230.1| RNase HII [Streptococcus pneumoniae] gi|73916784|gb|AAZ93260.1| RNase HII [Streptococcus pneumoniae] gi|182628706|gb|ACB89654.1| ribonuclease HIII [Streptococcus pneumoniae CGSP14] gi|301801316|emb|CBW33999.1| ribonuclease HIII [Streptococcus pneumoniae INV200] gi|302597629|gb|EFL64709.1| ribonuclease HIII [Streptococcus pneumoniae BS455] gi|302636443|gb|EFL66935.1| ribonuclease HIII [Streptococcus pneumoniae SP14-BS292] gi|302639415|gb|EFL69873.1| ribonuclease HIII [Streptococcus pneumoniae SP-BS293] gi|302641615|gb|EFL71975.1| ribonuclease HIII [Streptococcus pneumoniae BS458] gi|302643845|gb|EFL74107.1| ribonuclease HIII [Streptococcus pneumoniae BS457] gi|302645629|gb|EFL75859.1| ribonuclease HIII [Streptococcus pneumoniae BS397] Length = 290 Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|15902409|ref|NP_357959.1| ribonuclease HIII [Streptococcus pneumoniae R6] gi|116516121|ref|YP_815878.1| ribonuclease HIII [Streptococcus pneumoniae D39] gi|148988156|ref|ZP_01819619.1| ribonuclease HIII [Streptococcus pneumoniae SP6-BS73] gi|169834316|ref|YP_001693911.1| ribonuclease HIII [Streptococcus pneumoniae Hungary19A-6] gi|221231270|ref|YP_002510422.1| ribonuclease HIII [Streptococcus pneumoniae ATCC 700669] gi|30316193|sp|P59660|RNH3_STRR6 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|122279236|sp|Q04M70|RNH3_STRP2 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|238688318|sp|B1I9J8|RNH3_STRPI RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|254808015|sp|B8ZLH1|RNH3_STRPJ RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|2209339|gb|AAC45437.1| ribonuclease HII [Streptococcus pneumoniae] gi|15457925|gb|AAK99169.1| Ribonuclease HII [Streptococcus pneumoniae R6] gi|73916706|gb|AAZ93221.1| RNase HII [Streptococcus pneumoniae] gi|73916762|gb|AAZ93249.1| RNase HII [Streptococcus pneumoniae] gi|73916764|gb|AAZ93250.1| RNase HII [Streptococcus pneumoniae] gi|73916766|gb|AAZ93251.1| RNase HII [Streptococcus pneumoniae] gi|73916768|gb|AAZ93252.1| RNase HII [Streptococcus pneumoniae] gi|73916770|gb|AAZ93253.1| RNase HII [Streptococcus pneumoniae] gi|73916774|gb|AAZ93255.1| RNase HII [Streptococcus pneumoniae] gi|73916776|gb|AAZ93256.1| RNase HII [Streptococcus pneumoniae] gi|73916778|gb|AAZ93257.1| RNase HII [Streptococcus pneumoniae] gi|73916790|gb|AAZ93263.1| RNase HII [Streptococcus pneumoniae] gi|73916794|gb|AAZ93265.1| RNase HII [Streptococcus pneumoniae] gi|73916796|gb|AAZ93266.1| RNase HII [Streptococcus pneumoniae] gi|73916798|gb|AAZ93267.1| RNase HII [Streptococcus pneumoniae] gi|73916802|gb|AAZ93269.1| RNase HII [Streptococcus pneumoniae] gi|73916804|gb|AAZ93270.1| RNase HII [Streptococcus pneumoniae] gi|73916806|gb|AAZ93271.1| RNase HII [Streptococcus pneumoniae] gi|73916814|gb|AAZ93275.1| RNase HII [Streptococcus pneumoniae] gi|116076697|gb|ABJ54417.1| ribonuclease HIII [Streptococcus pneumoniae D39] gi|147926620|gb|EDK77693.1| ribonuclease HIII [Streptococcus pneumoniae SP6-BS73] gi|168996818|gb|ACA37430.1| ribonuclease hiii [Streptococcus pneumoniae Hungary19A-6] gi|220673730|emb|CAR68229.1| ribonuclease HIII [Streptococcus pneumoniae ATCC 700669] Length = 290 Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|225856132|ref|YP_002737643.1| ribonuclease HIII [Streptococcus pneumoniae P1031] gi|254808018|sp|C1CIQ5|RNH3_STRZP RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|225725696|gb|ACO21548.1| ribonuclease hiii [Streptococcus pneumoniae P1031] Length = 290 Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|330925767|ref|XP_003301184.1| hypothetical protein PTT_12627 [Pyrenophora teres f. teres 0-1] gi|311324289|gb|EFQ90711.1| hypothetical protein PTT_12627 [Pyrenophora teres f. teres 0-1] Length = 332 Score = 37.7 bits (86), Expect = 1.0, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 34/176 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-------NDSKKISHKKREELYEKITS- 77 V G+DE GRG + GP+V A L P + + +DSK ++ + R L K+ + Sbjct: 51 VLGVDEAGRGPVLGPMVYALFYL-PTELHHSLLADTHHFDDSKVLTPEVRSNLMRKLCTK 109 Query: 78 ------SAIISISSASHQYIDKH-------NIHKATLDAIYHAVENL---QVIPRSALID 121 + + S Q I H N++ +DA ++ + V ID Sbjct: 110 GSDLYDAGGWATRLLSAQDISAHMLSPSVYNLNAQAMDATIDLIKGVLAQGVNVTEIYID 169 Query: 122 GRSIPE--------DLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 PE P V K DS+ ++AAS+ AKVTRD + + ++ Y Sbjct: 170 TIGKPEIYQRKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRDAALDVCYEPY 225 >gi|299822574|ref|ZP_07054460.1| ribonuclease H [Listeria grayi DSM 20601] gi|299816103|gb|EFI83341.1| ribonuclease H [Listeria grayi DSM 20601] Length = 253 Score = 37.7 bits (86), Expect = 1.0, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 25/154 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI---TSS 78 V G DEVG G GP+ V A + +P G+ DSK + + + EKI Sbjct: 40 VVGSDEVGTGDYFGPITVCAAYVSSEMMPQLTALGVRDSKDMRDPEILTVAEKIIPFVPH 99 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVENLQ-----VIPRSALIDG--------- 122 +++ + + + + +++ + AI H A+EN+ + P + LID Sbjct: 100 SVLICPNGKYNALQQSGMNQGKMKAILHNRAIENVLKKLAPLHPDAILIDQFAEKGVYYR 159 Query: 123 --RSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 + P + + K + L++AAASIIA+ Sbjct: 160 YLANEPSIMRENVYFATKAEGHHLAVAAASIIAR 193 >gi|171779238|ref|ZP_02920209.1| hypothetical protein STRINF_01086 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282294|gb|EDT47721.1| hypothetical protein STRINF_01086 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 299 Score = 37.7 bits (86), Expect = 1.0, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 8/85 (9%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREE----LYEK 74 + P+ G DEVG G+ G + V A + P++ G++DSK ++ K + L EK Sbjct: 81 VMPLIGSDEVGNGSYFGGLAVVASFVTPDDHALLKKLGVDDSKNLTDSKIRQIAPILEEK 140 Query: 75 ITSSAIISISSASHQYIDKHNIHKA 99 I A++ +Q + K +H A Sbjct: 141 IKHKALLLSPQKYNQVVGKGKMHNA 165 >gi|307710539|ref|ZP_07646975.1| ribonuclease HIII [Streptococcus mitis SK564] gi|307618692|gb|EFN97832.1| ribonuclease HIII [Streptococcus mitis SK564] Length = 293 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|168485538|ref|ZP_02710046.1| ribonuclease hiii [Streptococcus pneumoniae CDC1087-00] gi|73916736|gb|AAZ93236.1| RNase HII [Streptococcus pneumoniae] gi|73916800|gb|AAZ93268.1| RNase HII [Streptococcus pneumoniae] gi|73916812|gb|AAZ93274.1| RNase HII [Streptococcus pneumoniae] gi|183571185|gb|EDT91713.1| ribonuclease hiii [Streptococcus pneumoniae CDC1087-00] Length = 290 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|190344386|gb|EDK36053.2| hypothetical protein PGUG_00151 [Meyerozyma guilliermondii ATCC 6260] Length = 343 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 44/178 (24%), Positives = 68/178 (38%), Gaps = 37/178 (20%) Query: 26 VAGIDEVGRGALAGPVVVA-AIILDPNNI----PFGINDSKKISHKKREELYEKIT---- 76 V G+DE GRG + GP+V + L+ +G DSK + KR EL+ + Sbjct: 73 VLGVDEAGRGPVLGPMVYGISYCLESYQEDLKHKYGFADSKVLKEDKRRELFYMVESMDH 132 Query: 77 ------------------SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 SSA++ A+ H T+ I +++ V + Sbjct: 133 ELNENVGWATRTMTARDISSAMLQGRGAAGGANLNEQAHNTTIQLIREVLDS-GVNVKKV 191 Query: 119 LIDGRSIPED--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 +D P P V K DSI ++ AS++AKVTRD + H + Sbjct: 192 FVDTVGPPATYQKKLQGIFPTLEITVTKKADSIFPIVSTASVVAKVTRDLNIHYYHDQ 249 >gi|73916722|gb|AAZ93229.1| RNase HII [Streptococcus pneumoniae] Length = 290 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|73916710|gb|AAZ93223.1| RNase HII [Streptococcus pneumoniae] gi|73916742|gb|AAZ93239.1| RNase HII [Streptococcus pneumoniae] gi|73916744|gb|AAZ93240.1| RNase HII [Streptococcus pneumoniae] gi|73916746|gb|AAZ93241.1| RNase HII [Streptococcus pneumoniae] gi|73916748|gb|AAZ93242.1| RNase HII [Streptococcus pneumoniae] Length = 290 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|307706054|ref|ZP_07642873.1| ribonuclease HIII [Streptococcus mitis SK321] gi|307618454|gb|EFN97602.1| ribonuclease HIII [Streptococcus mitis SK321] Length = 293 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|73916726|gb|AAZ93231.1| RNase HII [Streptococcus pneumoniae] Length = 294 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|222153672|ref|YP_002562849.1| ribonuclease HIII [Streptococcus uberis 0140J] gi|254808016|sp|B9DVL0|RNH3_STRU0 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|222114485|emb|CAR43350.1| ribonuclease HIII [Streptococcus uberis 0140J] Length = 301 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 27/157 (17%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKIS-HKKRE---ELYEKI 75 +P+ G DEVG G+ G + V A + P + + G++DSK ++ HK R+ L EKI Sbjct: 82 YPLIGSDEVGNGSYFGGLAVVASFVKPEDHDYLKQLGVDDSKSLTDHKIRQIAPLLEEKI 141 Query: 76 TSSAIISISSASHQYIDKHNIHKATL-------DAIYHAVENLQVIPRSALIDGRS---- 124 +++ + + K + A AI+ ++ +VIP +ID + Sbjct: 142 PHKSLLLTPQKYNTLVGKGKAYNAVSVKVALHNQAIFLLLQQ-KVIPERIIIDAFTSHSN 200 Query: 125 ------IPEDLPCQAFAVI-KGDSISLSIAAASIIAK 154 ++ +A +I K +S L++A +SIIA+ Sbjct: 201 YLKHLKTEKNQFTEAITLIEKAESQFLAVAVSSIIAR 237 >gi|257867416|ref|ZP_05647069.1| ribonuclease HIII [Enterococcus casseliflavus EC30] gi|257873746|ref|ZP_05653399.1| ribonuclease HIII [Enterococcus casseliflavus EC10] gi|257877497|ref|ZP_05657150.1| ribonuclease HIII [Enterococcus casseliflavus EC20] gi|257801472|gb|EEV30402.1| ribonuclease HIII [Enterococcus casseliflavus EC30] gi|257807910|gb|EEV36732.1| ribonuclease HIII [Enterococcus casseliflavus EC10] gi|257811663|gb|EEV40483.1| ribonuclease HIII [Enterococcus casseliflavus EC20] Length = 308 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 24/154 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---S 78 V G DEVG G+ GP+VV A+ +P G+ DSK ++ + ++ KI Sbjct: 94 VVGSDEVGNGSYFGPLVVCAVYAKKEQLPQLKALGVKDSKMLTDPEIRKMAPKIKELVPY 153 Query: 79 AIISISSASHQYID-KHNIHKATLDAIYHAVE-NLQVI----PRSALIDGRSIPED---- 128 +++++ + + I K+N + + A+ LQ I P + LID + ++ Sbjct: 154 QLLTVTPSKYNEIQPKYNTVRMKVALHNQAIRLLLQKIAPETPDAILIDQFTSEKNYRTY 213 Query: 129 LPCQAFAV-------IKGDSISLSIAAASIIAKV 155 L + AV KG+ L++AAASI+ + Sbjct: 214 LKSEQVAVTEKLYFATKGEQYHLAVAAASILCRT 247 >gi|307708231|ref|ZP_07644698.1| ribonuclease hiii [Streptococcus mitis NCTC 12261] gi|307615677|gb|EFN94883.1| ribonuclease hiii [Streptococcus mitis NCTC 12261] Length = 293 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 +P+ G DEVG G+ G + V A + P+ F G+ DSK ++ K + L EKI Sbjct: 78 FPLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDLKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|315612578|ref|ZP_07887491.1| ribonuclease HIII [Streptococcus sanguinis ATCC 49296] gi|315315559|gb|EFU63598.1| ribonuclease HIII [Streptococcus sanguinis ATCC 49296] Length = 291 Score = 37.4 bits (85), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 8/66 (12%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 +P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 FPMIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAII 81 A++ Sbjct: 138 QHQALL 143 >gi|313230305|emb|CBY08009.1| unnamed protein product [Oikopleura dioica] Length = 195 Score = 37.4 bits (85), Expect = 1.4, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 22/128 (17%) Query: 56 GINDSKKISHKKREELYEKITSSAIISIS---------SASHQYIDKHNI----HKATLD 102 G NDSK++ RE + + I S I + S S K+N+ H + Sbjct: 21 GANDSKQLEEVDRERMLKSIDKSGWIGYTGVVLPPAYISKSMLRRIKYNLNEMSHDTAIS 80 Query: 103 AIYHAVENLQVIPRSALIDGRSIPE---DLPCQAFAVI------KGDSISLSIAAASIIA 153 I A++ + +S +D PE D + F + K D+ + AASIIA Sbjct: 81 MIRRAIDYHGINVKSVFVDTVGKPEKYQDKLLRYFPQLSIKVESKADATYPIVGAASIIA 140 Query: 154 KVTRDRLM 161 KVTRD+L+ Sbjct: 141 KVTRDKLV 148 >gi|314938144|ref|ZP_07845449.1| ribonuclease HIII [Enterococcus faecium TX0133a04] gi|314943815|ref|ZP_07850550.1| ribonuclease HIII [Enterococcus faecium TX0133C] gi|314949774|ref|ZP_07853084.1| ribonuclease HIII [Enterococcus faecium TX0082] gi|314951182|ref|ZP_07854240.1| ribonuclease HIII [Enterococcus faecium TX0133A] gi|314994413|ref|ZP_07859697.1| ribonuclease HIII [Enterococcus faecium TX0133B] gi|314995609|ref|ZP_07860703.1| ribonuclease HIII [Enterococcus faecium TX0133a01] gi|313590197|gb|EFR69042.1| ribonuclease HIII [Enterococcus faecium TX0133a01] gi|313591185|gb|EFR70030.1| ribonuclease HIII [Enterococcus faecium TX0133B] gi|313596661|gb|EFR75506.1| ribonuclease HIII [Enterococcus faecium TX0133A] gi|313597539|gb|EFR76384.1| ribonuclease HIII [Enterococcus faecium TX0133C] gi|313642491|gb|EFS07071.1| ribonuclease HIII [Enterococcus faecium TX0133a04] gi|313643847|gb|EFS08427.1| ribonuclease HIII [Enterococcus faecium TX0082] Length = 313 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 33/195 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHK---KREELYEKITSS 78 V G DEVG G+ GP+ V A + + + G+ DSK++ + ++ +K Sbjct: 99 VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKKTIPY 158 Query: 79 AIISISSASHQYID-KHN-------IHKATLDAIYHAVENLQVIPRSALID--------- 121 ++ +S + I K+N +H + + +E + P + LID Sbjct: 159 KLLVLSPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIEPEK--PEAILIDQFTPEANFK 216 Query: 122 --GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 R L + + V KG+ L++AAASII +R + HK + G G Sbjct: 217 KYARLEKNQLQEKLYFVTKGEQYHLAVAAASII---SRASFLEELHKASAEAGITLPSGA 273 Query: 180 PTAKHQQVIK--EKG 192 T Q K EKG Sbjct: 274 GTKSDQVAAKLLEKG 288 >gi|69245129|ref|ZP_00603253.1| Ribonuclease HIII [Enterococcus faecium DO] gi|257879657|ref|ZP_05659310.1| ribonuclease HIII [Enterococcus faecium 1,230,933] gi|257890323|ref|ZP_05669976.1| ribonuclease HIII [Enterococcus faecium 1,231,410] gi|258614464|ref|ZP_05712234.1| ribonuclease HIII [Enterococcus faecium DO] gi|260559681|ref|ZP_05831861.1| ribonuclease HIII [Enterococcus faecium C68] gi|293560083|ref|ZP_06676587.1| ribonuclease hiii [Enterococcus faecium E1162] gi|294614400|ref|ZP_06694316.1| ribonuclease hiii [Enterococcus faecium E1636] gi|294617524|ref|ZP_06697154.1| ribonuclease hiii [Enterococcus faecium E1679] gi|68195972|gb|EAN10405.1| Ribonuclease HIII [Enterococcus faecium DO] gi|257813885|gb|EEV42643.1| ribonuclease HIII [Enterococcus faecium 1,230,933] gi|257826683|gb|EEV53309.1| ribonuclease HIII [Enterococcus faecium 1,231,410] gi|260074349|gb|EEW62671.1| ribonuclease HIII [Enterococcus faecium C68] gi|291592708|gb|EFF24301.1| ribonuclease hiii [Enterococcus faecium E1636] gi|291596130|gb|EFF27393.1| ribonuclease hiii [Enterococcus faecium E1679] gi|291605950|gb|EFF35380.1| ribonuclease hiii [Enterococcus faecium E1162] Length = 305 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 33/195 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHK---KREELYEKITSS 78 V G DEVG G+ GP+ V A + + + G+ DSK++ + ++ +K Sbjct: 91 VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKKTIPY 150 Query: 79 AIISISSASHQYID-KHN-------IHKATLDAIYHAVENLQVIPRSALID--------- 121 ++ +S + I K+N +H + + +E + P + LID Sbjct: 151 KLLVLSPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIEPEK--PEAILIDQFTPEANFK 208 Query: 122 --GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 R L + + V KG+ L++AAASII +R + HK + G G Sbjct: 209 KYARLEKNQLQEKLYFVTKGEQYHLAVAAASII---SRASFLEELHKASAEAGITLPSGA 265 Query: 180 PTAKHQQVIK--EKG 192 T Q K EKG Sbjct: 266 GTKSDQVAAKLLEKG 280 >gi|289168568|ref|YP_003446837.1| predicted ribonuclease HIII [Streptococcus mitis B6] gi|288908135|emb|CBJ22976.1| predicted ribonuclease HIII [Streptococcus mitis B6] Length = 293 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|325568912|ref|ZP_08145205.1| ribonuclease HIII [Enterococcus casseliflavus ATCC 12755] gi|325157950|gb|EGC70106.1| ribonuclease HIII [Enterococcus casseliflavus ATCC 12755] Length = 308 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 24/154 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---S 78 V G DEVG G+ GP+VV A+ +P G+ DSK ++ + ++ KI Sbjct: 94 VVGSDEVGNGSYFGPLVVCAVYAKKEQLPQLKALGVKDSKMLTDPEIRKMAPKIKELVPY 153 Query: 79 AIISISSASHQYID-KHNIHKATLDAIYHAVE-NLQVI----PRSALIDGRSIPED---- 128 +++++ + + I K+N + + A+ LQ I P + LID + ++ Sbjct: 154 QLLTVTPSKYNEIQPKYNTVRMKVALHNQAIRLLLQKIAPETPDAILIDQFTSEKNYRTY 213 Query: 129 LPCQAFAV-------IKGDSISLSIAAASIIAKV 155 L + AV KG+ L++AAASI+ + Sbjct: 214 LKSEQAAVTEKLYFATKGEQYHLAVAAASILCRT 247 >gi|182413914|ref|YP_001818980.1| ribonuclease HIII [Opitutus terrae PB90-1] gi|177841128|gb|ACB75380.1| ribonuclease HIII [Opitutus terrae PB90-1] Length = 334 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREEL 71 P AG+DE G+G GPV+ A +I + I G+ DSKKI+ + EL Sbjct: 105 PHAGLDESGKGDFFGPVIAATVIAEKPAIEAWRKAGVQDSKKIAETRIIEL 155 >gi|281358639|ref|ZP_06245117.1| ribonuclease HIII [Victivallis vadensis ATCC BAA-548] gi|281314869|gb|EFA98904.1| ribonuclease HIII [Victivallis vadensis ATCC BAA-548] Length = 315 Score = 37.0 bits (84), Expect = 1.8, Method: Compositional matrix adjust. Identities = 49/201 (24%), Positives = 88/201 (43%), Gaps = 31/201 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKI-SHKKREELYEKI---- 75 P GIDE G+G GP+ +A + D P G DSK I S KK EL + I Sbjct: 95 PHGGIDESGKGDFFGPLCIAGVYADAETGPELRKLGCCDSKLIKSPKKILELAKGIREIA 154 Query: 76 -TSSAIISISSASHQYI-DK-HNIHKATLDAIYHAVEN-LQVIPRSALIDGRSIPEDLPC 131 A++++ ++ + DK N+++ +EN L+ +P + ++ Sbjct: 155 RDQYAVVNLPPETYNRLYDKIGNLNRLLAWGHARVIENLLEKVPECPRMLSDKFADESLI 214 Query: 132 QAFAVIKGDSISL----------SIAAASIIAKVTRDRLMRIAHKKYPDYG--FDSHVGY 179 + + +G I + ++AAASI+A R++ +R K ++G F G Sbjct: 215 KRALMTRGKQIRMEQRTKAESDVAVAAASILA---REQFLRGMEKLSAEFGETFPKGAG- 270 Query: 180 PTAKHQ--QVIKEKGPSCIHR 198 P + +++++ GP R Sbjct: 271 PLVRETGARILEKHGPGAFAR 291 >gi|56421232|ref|YP_148550.1| ribonuclease HIII [Geobacillus kaustophilus HTA426] gi|81346706|sp|Q5KWF4|RNH3_GEOKA RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|56381074|dbj|BAD76982.1| ribonuclease HIII (RNase HIII) [Geobacillus kaustophilus HTA426] Length = 311 Score = 37.0 bits (84), Expect = 1.8, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 7/86 (8%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS---AI 80 G DEVG G GP+VVAA +D ++I G+ DSK+++ + ++ I + A+ Sbjct: 97 GSDEVGTGDYFGPIVVAAAYVDRSHIAKIAALGVKDSKQLTDEAIHKIAPAIMETAPYAV 156 Query: 81 ISISSASHQYIDKHNIHKATLDAIYH 106 + +A + + + + + A+ H Sbjct: 157 TVLDNAEYNRWQRSGMPQTKMKALLH 182 >gi|297529143|ref|YP_003670418.1| ribonuclease HIII [Geobacillus sp. C56-T3] gi|297252395|gb|ADI25841.1| ribonuclease HIII [Geobacillus sp. C56-T3] Length = 311 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 7/86 (8%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS---AI 80 G DEVG G GP+VVAA +D ++I G+ DSK+++ + + + I + A+ Sbjct: 97 GSDEVGTGDYFGPIVVAAAYVDRSHIAKIAALGVKDSKQLNDEAIKRIAPAIMETAPYAV 156 Query: 81 ISISSASHQYIDKHNIHKATLDAIYH 106 + +A + + + + + A+ H Sbjct: 157 TVLDNAEYNRWQRSGMPQTKMKALLH 182 >gi|253751116|ref|YP_003024257.1| ribonuclease HIII [Streptococcus suis SC84] gi|253753017|ref|YP_003026157.1| ribonuclease HIII [Streptococcus suis P1/7] gi|253754840|ref|YP_003027980.1| ribonuclease HIII [Streptococcus suis BM407] gi|251815405|emb|CAZ50980.1| ribonuclease HIII [Streptococcus suis SC84] gi|251817304|emb|CAZ55036.1| ribonuclease HIII [Streptococcus suis BM407] gi|251819262|emb|CAR44544.1| ribonuclease HIII [Streptococcus suis P1/7] gi|292557671|gb|ADE30672.1| Ribonuclease HIII [Streptococcus suis GZ1] gi|319757381|gb|ADV69323.1| ribonuclease HIII [Streptococcus suis JS14] Length = 296 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 5/63 (7%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKIS 64 P +A + +N+ P+ G DEVG G+ G + V A + P + F G++DSKK++ Sbjct: 68 EPESSGQATIPGQNL-PMIGTDEVGNGSYFGGLAVVAGFVRPEDHSFLKSLGVDDSKKMT 126 Query: 65 HKK 67 +K Sbjct: 127 DQK 129 >gi|151944462|gb|EDN62740.1| Rnh2A [Saccharomyces cerevisiae YJM789] gi|259149289|emb|CAY82531.1| Rnh201p [Saccharomyces cerevisiae EC1118] Length = 307 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 6/56 (10%) Query: 26 VAGIDEVGRGALAGPVVVAAI-----ILDPNNIP-FGINDSKKISHKKREELYEKI 75 + GIDE GRG + GP+V A D IP + +DSKK++ R L+ KI Sbjct: 35 IMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIRRMLFSKI 90 >gi|146317882|ref|YP_001197594.1| ribonuclease HIII [Streptococcus suis 05ZYH33] gi|146320071|ref|YP_001199782.1| ribonuclease HIII [Streptococcus suis 98HAH33] gi|145688688|gb|ABP89194.1| Ribonuclease HIII [Streptococcus suis 05ZYH33] gi|145690877|gb|ABP91382.1| Ribonuclease HIII [Streptococcus suis 98HAH33] Length = 302 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 5/63 (7%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKIS 64 P +A + +N+ P+ G DEVG G+ G + V A + P + F G++DSKK++ Sbjct: 74 EPESSGQATIPGQNL-PMIGTDEVGNGSYFGGLAVVAGFVRPEDHSFLKSLGVDDSKKMT 132 Query: 65 HKK 67 +K Sbjct: 133 DQK 135 >gi|323346904|gb|EGA81183.1| Rnh201p [Saccharomyces cerevisiae Lalvin QA23] Length = 307 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 6/56 (10%) Query: 26 VAGIDEVGRGALAGPVVVAAI-----ILDPNNIP-FGINDSKKISHKKREELYEKI 75 + GIDE GRG + GP+V A D IP + +DSKK++ R L+ KI Sbjct: 35 IMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIRRMLFSKI 90 >gi|323335818|gb|EGA77097.1| Rnh201p [Saccharomyces cerevisiae Vin13] Length = 307 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 6/56 (10%) Query: 26 VAGIDEVGRGALAGPVVVAAI-----ILDPNNIP-FGINDSKKISHKKREELYEKI 75 + GIDE GRG + GP+V A D IP + +DSKK++ R L+ KI Sbjct: 35 IMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIRRMLFSKI 90 >gi|6324257|ref|NP_014327.1| Rnh201p [Saccharomyces cerevisiae S288c] gi|1730743|sp|P53942|RNH2A_YEAST RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=RNase H(201); AltName: Full=RNase H(35); AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|791114|emb|CAA60188.1| unknown [Saccharomyces cerevisiae] gi|1301957|emb|CAA95946.1| unnamed protein product [Saccharomyces cerevisiae] gi|190409061|gb|EDV12326.1| ribonuclease HI 35 large subunit [Saccharomyces cerevisiae RM11-1a] gi|207341690|gb|EDZ69676.1| YNL072Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi|285814579|tpg|DAA10473.1| TPA: Rnh201p [Saccharomyces cerevisiae S288c] gi|323331967|gb|EGA73379.1| Rnh201p [Saccharomyces cerevisiae AWRI796] gi|323352575|gb|EGA85074.1| Rnh201p [Saccharomyces cerevisiae VL3] Length = 307 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 6/56 (10%) Query: 26 VAGIDEVGRGALAGPVVVAAI-----ILDPNNIP-FGINDSKKISHKKREELYEKI 75 + GIDE GRG + GP+V A D IP + +DSKK++ R L+ KI Sbjct: 35 IMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIRRMLFSKI 90 >gi|309799726|ref|ZP_07693942.1| ribonuclease hiii [Streptococcus infantis SK1302] gi|308116642|gb|EFO54102.1| ribonuclease hiii [Streptococcus infantis SK1302] Length = 293 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREEL 71 +P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K +L Sbjct: 78 FPLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQL 129 >gi|327439303|dbj|BAK15668.1| ribonuclease HIII [Solibacillus silvestris StLB046] Length = 309 Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust. Identities = 39/173 (22%), Positives = 74/173 (42%), Gaps = 31/173 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREEL---YEKITSS 78 V G DE G G GPV VAA+ + + I G+ DSK+++ ++ K+ + Sbjct: 92 VLGSDETGTGDYFGPVTVAAVYVPADKISLVQELGVKDSKQLTDDYMRQIAPDLMKVCAY 151 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI-------PRSALIDG--------- 122 +I+++ + + I + + A+ H V+ P+ LID Sbjct: 152 SILTLRNDKYNEIQARGYSQGKIKALLHNQALKHVLTKIAPETPQYILIDQFAERGIYYN 211 Query: 123 --RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYP 169 ++ E + K +++ +++A ASI+A+ DRL ++ YP Sbjct: 212 HIKNEKEIVRQNVLFSTKAENLHVAVATASILARYAFLKEMDRLAKVTG--YP 262 >gi|156063040|ref|XP_001597442.1| hypothetical protein SS1G_01636 [Sclerotinia sclerotiorum 1980] gi|154696972|gb|EDN96710.1| hypothetical protein SS1G_01636 [Sclerotinia sclerotiorum 1980 UF-70] Length = 361 Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust. Identities = 45/183 (24%), Positives = 74/183 (40%), Gaps = 32/183 (17%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFG------INDSKKISHKKREELYEKITSS--- 78 GIDE GRG + GP+V L +DSK ++ R EL +K+ + Sbjct: 70 GIDEAGRGPVLGPMVYGLFYLPLPLSDPLLRNTHHFDDSKVLTPTVRSELMKKLCTPDSD 129 Query: 79 -------AIISISS----ASHQYIDKHNIHKATLD---AIYHAVENLQVIPRSALIDG-- 122 A+ +S+ A+ +N++ +D A+ V + V + ID Sbjct: 130 LYTQCGWAVDVLSARDIGANMMKPATYNLNAQAMDSTIALIQGVMDKGVNVKEIYIDALG 189 Query: 123 ------RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 + + P V K DS+ ++AAS+ AKVTRD + ++ Y D Sbjct: 190 NTVTYQKKLERIFPTAQITVAKKADSLYPCVSAASVCAKVTRDAALETLYESYVSKDGDQ 249 Query: 176 HVG 178 +G Sbjct: 250 EMG 252 >gi|116200221|ref|XP_001225922.1| hypothetical protein CHGG_08266 [Chaetomium globosum CBS 148.51] gi|88179545|gb|EAQ87013.1| hypothetical protein CHGG_08266 [Chaetomium globosum CBS 148.51] Length = 344 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 70/173 (40%), Gaps = 34/173 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILD-PNNIPF-----GINDSKKISHKKREELYEKITS---- 77 G+DE GRG + GP+V L P + P +DSK ++ R L E + + Sbjct: 63 GVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRTTHHFDDSKVLTPAVRASLMETLCTPTSD 122 Query: 78 ---SAIISISSASHQYIDK---------HNIHKATLDAIYHAVENL---QVIPRSALIDG 122 S ++ + S + I +N++ +DA ++ + V R +D Sbjct: 123 LYESCGWAVDALSARDIGAGMLRPGLGAYNLNAQAMDATVELIKGVYARGVNVREIYVDT 182 Query: 123 RSIPED--------LPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK 166 P P V K DS+ S++AAS+ AKVTRD + K Sbjct: 183 IGQPAAYQAKLARVFPAAKVTVAKKADSLYPSVSAASVCAKVTRDVALETLWK 235 >gi|225860427|ref|YP_002741936.1| ribonuclease HIII [Streptococcus pneumoniae Taiwan19F-14] gi|298229684|ref|ZP_06963365.1| ribonuclease HIII [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254632|ref|ZP_06978218.1| ribonuclease HIII [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502197|ref|YP_003724137.1| ribonuclease H [Streptococcus pneumoniae TCH8431/19A] gi|254808019|sp|C1CPR4|RNH3_STRZT RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|225727225|gb|ACO23076.1| ribonuclease hiii [Streptococcus pneumoniae Taiwan19F-14] gi|298237792|gb|ADI68923.1| ribonuclease H [Streptococcus pneumoniae TCH8431/19A] gi|327390813|gb|EGE89153.1| ribonuclease HIII [Streptococcus pneumoniae GA04375] Length = 293 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAII 81 A++ Sbjct: 138 QHQALL 143 >gi|73916754|gb|AAZ93245.1| RNase HII [Streptococcus pneumoniae] gi|73916758|gb|AAZ93247.1| RNase HII [Streptococcus pneumoniae] gi|73916760|gb|AAZ93248.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAII 81 A++ Sbjct: 138 QHQALL 143 >gi|253990541|ref|YP_003041897.1| syringopeptin synthetase C [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638888|emb|CAR67503.1| similar to Syringopeptin synthetase C [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781991|emb|CAQ85155.1| similar to Syringopeptin synthetase C [Photorhabdus asymbiotica] Length = 5167 Score = 36.6 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 30 DEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQ 89 D VGR AL P++ ++LDPN +P ++ + ++S L I +S S + Sbjct: 3336 DHVGRTALDDPMLSGLMVLDPNLLPDQLDSNPQVSALTARHLAYVIYTSG--STGTPKGV 3393 Query: 90 YIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAA 149 ++ H+ ++ I + + P S ++ S D ++ G SL+I A Sbjct: 3394 MVE----HRGLVNLIQDKIAQFDIHPNSRVLQFASFGFDASVWEIMMVLGGGASLAIPAD 3449 Query: 150 SI 151 ++ Sbjct: 3450 AV 3451 >gi|116513211|ref|YP_812118.1| ribonuclease HIII [Lactococcus lactis subsp. cremoris SK11] gi|123125205|sp|Q02VL7|RNH3_LACLS RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|116108865|gb|ABJ74005.1| Ribonuclease HIII [Lactococcus lactis subsp. cremoris SK11] Length = 292 Score = 36.6 bits (83), Expect = 2.4, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKK 67 A V K + G DEVG G+ G ++V A + N++ F G+ DSKK++ +K Sbjct: 68 AQVVPKKQTNLIGTDEVGNGSYFGGLMVTASFVSDNHLKFLKEMGVADSKKLTDEK 123 >gi|15828771|ref|NP_326131.1| ribonuclease HII (RNase HII) [Mycoplasma pulmonis UAB CTIP] gi|14089714|emb|CAC13473.1| RIBONUCLEASE HII (RNASE HII) [Mycoplasma pulmonis] Length = 243 Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 4/50 (8%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREEL 71 V GIDE G G P+V A ++ N I G+ DSKK+S K ++L Sbjct: 21 VLGIDETGVGDYFTPLVAAVAVVSEENVQKLIDLGVKDSKKLSDSKIQQL 70 >gi|330832064|ref|YP_004400889.1| ribonuclease HIII [Streptococcus suis ST3] gi|329306287|gb|AEB80703.1| ribonuclease HIII [Streptococcus suis ST3] Length = 296 Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 4/47 (8%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKK 67 P+ G DEVG G+ G + V A + P + F G++DSKK++ +K Sbjct: 83 PMIGTDEVGNGSYFGGLAVVASFVRPEDHAFLKSLGVDDSKKMTDQK 129 >gi|302413253|ref|XP_003004459.1| ribonuclease H2 subunit A [Verticillium albo-atrum VaMs.102] gi|261357035|gb|EEY19463.1| ribonuclease H2 subunit A [Verticillium albo-atrum VaMs.102] Length = 264 Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 40/177 (22%) Query: 28 GIDEVGRGALAGPVVVAAIILD-PNNIPF-----GINDSKKISHKKREELYEKITSS--- 78 GIDE GRG + GP+ AA L P + P +DSK ++ R L + S Sbjct: 72 GIDEAGRGPVLGPMTYAAFYLPMPLSDPLLRETHHFDDSKVLTPAVRSALMRALCSPSTD 131 Query: 79 -------AIISIS-----SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA-----LID 121 A+ S+S S + +N++ DA ++ VI R +D Sbjct: 132 LAASCGYAVRSLSARDIASGMLSTANPYNLNAQAFDATVEIIKG--VIARGVRVEEIYVD 189 Query: 122 GRSIPED--------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRI---AHK 166 P P V K DS+ ++AAS+ AKVTRD + + AHK Sbjct: 190 TVGQPAAYQAKLQRVFPSVKITVAKKADSLYPCVSAASVCAKVTRDAALEVMYEAHK 246 >gi|223932747|ref|ZP_03624745.1| ribonuclease HIII [Streptococcus suis 89/1591] gi|223898580|gb|EEF64943.1| ribonuclease HIII [Streptococcus suis 89/1591] Length = 296 Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 4/47 (8%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKK 67 P+ G DEVG G+ G + V A + P + F G++DSKK++ +K Sbjct: 83 PMIGTDEVGNGSYFGGLAVVASFVRPEDHAFLKSLGVDDSKKMTDQK 129 >gi|307704254|ref|ZP_07641173.1| ribonuclease HIII [Streptococcus mitis SK597] gi|307622165|gb|EFO01183.1| ribonuclease HIII [Streptococcus mitis SK597] Length = 293 Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 ++ S ++ I D++N Sbjct: 138 QHQTLLLSPSKYNEVIGDRYN 158 >gi|302023278|ref|ZP_07248489.1| ribonuclease HIII [Streptococcus suis 05HAS68] Length = 273 Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 4/47 (8%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKK 67 P+ G DEVG G+ G + V A + P + F G++DSKK++ +K Sbjct: 83 PMIGTDEVGNGSYFGGLAVVASFVRPEDHAFLKSLGVDDSKKMTDQK 129 >gi|196232748|ref|ZP_03131599.1| ribonuclease HIII [Chthoniobacter flavus Ellin428] gi|196223208|gb|EDY17727.1| ribonuclease HIII [Chthoniobacter flavus Ellin428] Length = 319 Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 67/160 (41%), Gaps = 37/160 (23%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKR-EELYE--KITS 77 P G+DE G+G GP+V+A D + GI DSKKI KR +L K T Sbjct: 98 PHFGVDESGKGDFFGPLVIAGCYTDRGITRTLMEAGIQDSKKIGSDKRIRDLAAIIKRTQ 157 Query: 78 SAIISISSASHQ-----YIDKHNIHKATLDAIYHAVENL------------------QVI 114 A+ S+ + + Y N+++ +ENL +I Sbjct: 158 GAVHSVVAIGPERYNQLYAKFGNLNRLLAWGHARVIENLLEIRPDCPRALSDQFANPALI 217 Query: 115 PRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 R+ L GR+I D +A +++AAASI+A+ Sbjct: 218 KRALLEKGRAIQLDQRTKA-------ESDVAVAAASILAR 250 >gi|71894629|ref|YP_278737.1| ribonuclease HII [Mycoplasma synoviae 53] Length = 237 Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 11/105 (10%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---- 77 V GIDEVG G P++ A+ + + + G+ DSK +S +K ++++ I S Sbjct: 18 VFGIDEVGVGEFFTPLIATAVYVPKDKLEILKNLGVKDSKLLSDEKIKKVFNDIKSHIQY 77 Query: 78 -SAIISISSASHQYIDKHNIHKATLDAIYHAVENL-QVIPRSALI 120 SA+IS S + + K N ++ A A+ NL + + +S L+ Sbjct: 78 ASALISQKSYNILFT-KFNANEIKFLAHAEAINNLRKKVKKSELL 121 >gi|315222238|ref|ZP_07864144.1| ribonuclease HIII [Streptococcus anginosus F0211] gi|315188571|gb|EFU22280.1| ribonuclease HIII [Streptococcus anginosus F0211] Length = 296 Score = 36.2 bits (82), Expect = 3.0, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 8/75 (10%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE 70 E + P+ G DEVG G+ G + V A + P F G+ DSK ++ +K + Sbjct: 72 EKTTSHRQNCPLIGTDEVGNGSYFGGLAVVASFVTPEQHDFLRKLGVGDSKTLTDQKIRQ 131 Query: 71 ----LYEKITSSAII 81 L EKI A++ Sbjct: 132 IVPLLKEKIQHQALL 146 >gi|144575201|gb|AAZ44026.2| ribonuclease HII [Mycoplasma synoviae 53] Length = 242 Score = 36.2 bits (82), Expect = 3.0, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 11/105 (10%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---- 77 V GIDEVG G P++ A+ + + + G+ DSK +S +K ++++ I S Sbjct: 23 VFGIDEVGVGEFFTPLIATAVYVPKDKLEILKNLGVKDSKLLSDEKIKKVFNDIKSHIQY 82 Query: 78 -SAIISISSASHQYIDKHNIHKATLDAIYHAVENL-QVIPRSALI 120 SA+IS S + + K N ++ A A+ NL + + +S L+ Sbjct: 83 ASALISQKSYNILFT-KFNANEIKFLAHAEAINNLRKKVKKSELL 126 >gi|73916816|gb|AAZ93276.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 36.2 bits (82), Expect = 3.1, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 15/123 (12%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKK 67 ++L R +N+ P+ G DEVG G+ G + V A + + F G+ DSK ++ +K Sbjct: 67 YQLVEENRGQNL-PLIGTDEVGNGSYFGGLAVVAAFVTSDQHDFLRKLGVGDSKTLTDQK 125 Query: 68 REE----LYEKITSSAIISISSASHQYI-DKHNI--HKATL--DAIYHAVENLQVIPRSA 118 + L EKI A++ S ++ I D++N K TL AIY ++ V P Sbjct: 126 IRQIAPILKEKIQHQALLLSPSKYNEVIGDRYNAVSVKVTLHNQAIYLLLQK-GVQPEKI 184 Query: 119 LID 121 +ID Sbjct: 185 VID 187 >gi|189195170|ref|XP_001933923.1| ribonuclease HI large subunit [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187979802|gb|EDU46428.1| ribonuclease HI large subunit [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 342 Score = 36.2 bits (82), Expect = 3.1, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 34/176 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-------NDSKKISHKKREELYEKITS- 77 V G+DE GRG + GP+V A L P + + +DSK ++ + R L K+ + Sbjct: 60 VLGVDEAGRGPVLGPMVYALFYL-PIELHHSLLADTHHFDDSKVLTPEVRSNLMRKLCTK 118 Query: 78 ------SAIISISSASHQYIDKH-------NIHKATLDAIYHAVENL---QVIPRSALID 121 + + S Q I H N++ +DA ++ + V ID Sbjct: 119 GSDLYDAGGWATRLLSAQDISAHMLSPSVYNLNAQAMDATIDLIKGVLAQGVNVTEIYID 178 Query: 122 GRSIPE--------DLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 PE P V K DS+ ++AAS+ AKVTRD + + ++ Y Sbjct: 179 TIGKPEIYQRKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRDAALDVCYEPY 234 >gi|225850093|ref|YP_002730327.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Persephonella marina EX-H1] gi|225646617|gb|ACO04803.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Persephonella marina EX-H1] Length = 306 Score = 36.2 bits (82), Expect = 3.2, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 4/80 (5%) Query: 30 DEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQ 89 D VGRG L P+VV L ++ +G+ D+ + K RE+LY + T + + + Sbjct: 86 DIVGRGKL--PIVVGGTWLYIQSLLYGLTDAPEGDWKIREQLYRRDTEDLYNELQNVDRE 143 Query: 90 YIDKHNIHKATLDAIYHAVE 109 Y +K IH I A+E Sbjct: 144 YAEK--IHPNDKRRIVRALE 161 >gi|9664592|gb|AAF97195.1|AF268611_19 ribonuclease HII [uncultured marine group II euryarchaeote 37F11] Length = 250 Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 80/208 (38%), Gaps = 53/208 (25%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHKKREELYEKITSSAIIS 82 G+DE GRG + GP+VV + + P + I DSK +SH KR+ Y+ + Sbjct: 9 GVDEAGRGPVLGPLVVGLLSI-PKEDEYMLEEQCIEDSKHLSHAKRKLHYDWLNQQV--- 64 Query: 83 ISSASHQYIDKHNIHKATLD-AIYHAVENLQVIPRSA----------------LIDGRSI 125 + Y+D +D A+Y N+ + A L+D + Sbjct: 65 --TERGWYVDTIICKPNRIDNAVYAKGLNILEVDLFASILNRHHRLFTQELDILLDACDV 122 Query: 126 PE------------DLPCQAFAVI---KGDSISLSIAAASIIAKVTRD-RLMRIAHKKYP 169 E D P +I K D+ + ASI+AKV RD + RIA Sbjct: 123 NEERFSNRISERLTDWPWLKTTMIAEHKADTNHRIVGGASILAKVVRDMEIERIA----V 178 Query: 170 DYGFDSHVGYPTAKHQ-----QVIKEKG 192 D G GYP + +IKE G Sbjct: 179 DVGAPVGSGYPADPNTVKALPYLIKEDG 206 >gi|293553123|ref|ZP_06673761.1| ribonuclease hiii [Enterococcus faecium E1039] gi|291602714|gb|EFF32928.1| ribonuclease hiii [Enterococcus faecium E1039] Length = 305 Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 28/157 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHK---KREELYEKITSS 78 V G DEVG G+ GP+ V A + + + G+ DSK+++ + ++ +K Sbjct: 91 VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELTDSQIIQLADILKKTIPY 150 Query: 79 AIISISSASHQYID-KHN-------IHKATLDAIYHAVENLQVIPRSALID--------- 121 ++ +S + I K+N +H T+ + + + P + LID Sbjct: 151 KLLVLSPEKYNEIQPKYNAVRMKVALHNQTIHLLLKKIAPEK--PEAILIDQFTPEANFK 208 Query: 122 --GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVT 156 R L + + V KG+ L++AAASII++ + Sbjct: 209 KYARLEKNQLQEKLYFVTKGEQYHLAVAAASIISRAS 245 >gi|301793646|emb|CBW36031.1| ribonuclease HIII [Streptococcus pneumoniae INV104] Length = 293 Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 10/93 (10%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKK 67 ++L R +N+ P+ G DEVG G+ G + V A + + F G+ DSK ++ +K Sbjct: 67 YQLVEENRGQNL-PLIGTDEVGNGSYFGGLAVVAAFVTSDQHDFLRKLGVGDSKTLTDQK 125 Query: 68 REE----LYEKITSSAIISISSASHQYI-DKHN 95 + L EKI A++ S ++ I D++N Sbjct: 126 IRQIAPILKEKIQHQALLLSPSKYNEVIGDRYN 158 >gi|138896261|ref|YP_001126714.1| ribonuclease HIII [Geobacillus thermodenitrificans NG80-2] gi|196250218|ref|ZP_03148912.1| ribonuclease HIII [Geobacillus sp. G11MC16] gi|134267774|gb|ABO67969.1| Ribonuclease HIII [Geobacillus thermodenitrificans NG80-2] gi|196210402|gb|EDY05167.1| ribonuclease HIII [Geobacillus sp. G11MC16] Length = 313 Score = 35.8 bits (81), Expect = 4.0, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 7/86 (8%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS---AI 80 G DEVG G GP+VVAA +D ++ G+ DSK+++ + + I + A+ Sbjct: 99 GSDEVGTGDYFGPIVVAAAYVDRGHLDRIAALGVKDSKQLNDETITRIAPTIMETVPYAV 158 Query: 81 ISISSASHQYIDKHNIHKATLDAIYH 106 +++A + + + + + A+ H Sbjct: 159 TVLTNAEYNRWQQSGMPQTKMKALLH 184 >gi|257882653|ref|ZP_05662306.1| ribonuclease HIII [Enterococcus faecium 1,231,502] gi|257883962|ref|ZP_05663615.1| ribonuclease HIII [Enterococcus faecium 1,231,501] gi|293568791|ref|ZP_06680105.1| ribonuclease hiii [Enterococcus faecium E1071] gi|294622759|ref|ZP_06701714.1| ribonuclease hiii [Enterococcus faecium U0317] gi|257818311|gb|EEV45639.1| ribonuclease HIII [Enterococcus faecium 1,231,502] gi|257819800|gb|EEV46948.1| ribonuclease HIII [Enterococcus faecium 1,231,501] gi|291588508|gb|EFF20342.1| ribonuclease hiii [Enterococcus faecium E1071] gi|291597810|gb|EFF28947.1| ribonuclease hiii [Enterococcus faecium U0317] Length = 305 Score = 35.8 bits (81), Expect = 4.0, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 28/157 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHK---KREELYEKITSS 78 V G DEVG G+ GP+ V A + + + G+ DSK++ + ++ +K Sbjct: 91 VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKKTIPY 150 Query: 79 AIISISSASHQYID-KHN-------IHKATLDAIYHAVENLQVIPRSALID--------- 121 ++ +S + I K+N +H + + +E + P + LID Sbjct: 151 KLLVLSPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIEPEK--PEAILIDQFTPEANFK 208 Query: 122 --GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVT 156 R L + + V KG+ L++AAASII++ + Sbjct: 209 KYARLEKNQLQEKLYFVTKGEQYHLAVAAASIISRAS 245 >gi|323128007|gb|ADX25304.1| ribonuclease HIII [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 299 Score = 35.8 bits (81), Expect = 4.1, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 4/47 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHK 66 P+ G DEVG G+ G + V A +DP + F G++DSK ++ + Sbjct: 83 LPMIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKTLTDQ 129 >gi|251783283|ref|YP_002997588.1| ribonuclease HIII [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391915|dbj|BAH82374.1| ribonuclease HIII [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 299 Score = 35.8 bits (81), Expect = 4.2, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 35/161 (21%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A +DP + F G++DSK ++ + L EKI Sbjct: 83 LPMIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKTLTDQTIRRIAPILEEKI 142 Query: 76 TSSAIISISSASHQYIDKHNIHKATL-------DAIYHAVENLQVIPRSALIDGRS---- 124 + +++ ++ + K + A AIY ++ + P +ID + Sbjct: 143 SHKSLLLSPKKYNEMVGKDKPYNAVSVKVALHNQAIYLLLQE-GINPEKIVIDAFTSQSN 201 Query: 125 -----------IPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 P L Q K +S+ L++A +SIIA+ Sbjct: 202 YEKHLKKEKNHFPNPLTFQE----KAESLYLAVAVSSIIAR 238 >gi|332364401|gb|EGJ42175.1| ribonuclease HIII [Streptococcus sanguinis SK355] Length = 296 Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 8/66 (12%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELY----EKI 75 + + G DEVG G+ G + V A + PN F G+ DSK ++ K +L EKI Sbjct: 81 FALIGTDEVGNGSYFGGLAVVASFVTPNQHDFLRKLGVGDSKTLNDSKIRQLAPVLKEKI 140 Query: 76 TSSAII 81 A++ Sbjct: 141 AHQALL 146 >gi|322377071|ref|ZP_08051563.1| ribonuclease HIII [Streptococcus sp. M334] gi|321281784|gb|EFX58792.1| ribonuclease HIII [Streptococcus sp. M334] Length = 293 Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREEL 71 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K +L Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQL 129 >gi|322391517|ref|ZP_08064986.1| ribonuclease HIII [Streptococcus peroris ATCC 700780] gi|321145600|gb|EFX40992.1| ribonuclease HIII [Streptococcus peroris ATCC 700780] Length = 293 Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + V A + P+ F G+ DSK ++ +K +L EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVASFVTPDQHHFLQKLGVGDSKSLTDQKIRQLAPLLKEKIQ 138 Query: 77 SSAII 81 A++ Sbjct: 139 HQALL 143 >gi|50291445|ref|XP_448155.1| hypothetical protein [Candida glabrata CBS 138] gi|49527466|emb|CAG61106.1| unnamed protein product [Candida glabrata] Length = 307 Score = 35.4 bits (80), Expect = 5.0, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 39/190 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL-----DPNNIP-FGINDSKKISHKKREELYEKITSSA 79 + G+DE GRG + GP+V D IP + +DSKK++ R L+ K+ + Sbjct: 42 ILGVDEAGRGPVMGPMVYGISYCTKEYQDKVLIPKYTFDDSKKLTDPVRRMLFSKMYAGE 101 Query: 80 I------------ISISSASHQY--IDKHNIHKATLDAIYHAVENLQVIPRSALID---- 121 I IS+ +Y +N+++ D ++ VI R ID Sbjct: 102 IDQVGYATTAITPYDISTGMSRYPPSRNYNLNEQAHDVTMALIQG--VIDRGVSIDHVYV 159 Query: 122 ---------GRSIPEDLPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 R + + P F V K DS+ ++ AS++AKVTRD L+ + ++ PD Sbjct: 160 DTVGPPASYQRKLEDRFPSIKFTVAKKADSLYCVVSVASVVAKVTRDLLIE-SLRRTPDE 218 Query: 172 GFDSHVGYPT 181 S GYP+ Sbjct: 219 IMGS--GYPS 226 >gi|71408510|ref|XP_806655.1| ribonuclease H [Trypanosoma cruzi strain CL Brener] gi|70870462|gb|EAN84804.1| ribonuclease H, putative [Trypanosoma cruzi] Length = 324 Score = 35.4 bits (80), Expect = 5.4, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 9/90 (10%) Query: 26 VAGIDEVGRGALAGPVVV--AAIILDPNNIPF---GINDSKKISHKKREELYEKI----T 76 V GIDE GRG + GP+V A I L ++ G+NDSK + +R+++ K+ T Sbjct: 41 VLGIDEAGRGPVIGPMVYTGAMIALHEHDRLLEYCGVNDSKLLGENQRKDVLCKLQELKT 100 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYH 106 S + + + IH L+ + H Sbjct: 101 FSTFTVVVTPAEIAAAMTGIHGKNLNTLSH 130 >gi|322827961|gb|EFZ31928.1| ribonuclease H, putative [Trypanosoma cruzi] Length = 324 Score = 35.4 bits (80), Expect = 5.4, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 9/90 (10%) Query: 26 VAGIDEVGRGALAGPVVV--AAIILDPNNIPF---GINDSKKISHKKREELYEKI----T 76 V GIDE GRG + GP+V A I L ++ G+NDSK + +R+++ K+ T Sbjct: 41 VLGIDEAGRGPVIGPMVYTGAMIALHEHDRLLEYCGVNDSKLLGENQRKDVLCKLQKLKT 100 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYH 106 S + + + IH L+ + H Sbjct: 101 FSTFTVVVTPAEIAAAMTGIHGKNLNTLSH 130 >gi|332686770|ref|YP_004456544.1| ribonuclease HIII [Melissococcus plutonius ATCC 35311] gi|332370779|dbj|BAK21735.1| ribonuclease HIII [Melissococcus plutonius ATCC 35311] Length = 309 Score = 35.4 bits (80), Expect = 5.4, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKI 75 V G DEVG G+ GP+ V A + +NI G+ DSK ++ + +L E + Sbjct: 93 VLGSDEVGNGSYFGPLTVCAAYVAKDNIKMLKAAGVKDSKNLTDNRIMQLAEML 146 >gi|149037819|gb|EDL92179.1| ribonuclease H2, large subunit, isoform CRA_c [Rattus norvegicus] gi|149037822|gb|EDL92182.1| ribonuclease H2, large subunit, isoform CRA_c [Rattus norvegicus] Length = 158 Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKI 75 V G+DE GRG + GP+V A + + + DSK ++ +RE L+ K+ Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKM 83 >gi|219850709|ref|YP_002465141.1| ribonuclease HIII [Methanosphaerula palustris E1-9c] gi|219544968|gb|ACL15418.1| ribonuclease HIII [Methanosphaerula palustris E1-9c] Length = 318 Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIISI 83 G DE G+G GP+VVAA+ LD G+ DSK +S ++ L + A +SI Sbjct: 108 GSDESGKGDYFGPLVVAAVCLDQQGAARLRAAGVTDSKALSDQENLSLASVVRKVA-VSI 166 Query: 84 S 84 S Sbjct: 167 S 167 >gi|331266981|ref|YP_004326611.1| ribonuclease HIII [Streptococcus oralis Uo5] gi|326683653|emb|CBZ01271.1| ribonuclease HIII [Streptococcus oralis Uo5] Length = 293 Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 25/151 (16%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKITSSA 79 G DEVG G+ G + V A + P+ F G+ DSK ++ +K + L EKI A Sbjct: 82 GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQLAPILKEKIQHQA 141 Query: 80 IISISSASHQYI-DKHNIHKATL----DAIYHAVENLQVIPRSALIDGRSIPED------ 128 ++ S ++ I +++N + AI+ ++ V P +ID + P++ Sbjct: 142 LLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQK-GVQPEKIVIDAFTSPKNYDKYLA 200 Query: 129 -----LPCQAFAVIKGDSISLSIAAASIIAK 154 P + K + L++A +SIIA+ Sbjct: 201 QEANRFPNKITLEEKAEGKYLAVAVSSIIAR 231 >gi|46107902|ref|XP_381010.1| hypothetical protein FG00834.1 [Gibberella zeae PH-1] Length = 338 Score = 35.0 bits (79), Expect = 6.7, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 56/187 (29%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDS----------------------KKISH 65 G+DE GRG + GP+V L P ++DS +I Sbjct: 63 GVDEAGRGPVLGPMVYGVFFL-----PISLSDSLLRETHHFDDSKVLKPAVRSDLMRILC 117 Query: 66 KKREELYEKITSSAIISISS----ASHQYIDKHNIHKATLDA-------IYHAVENLQVI 114 +LYE A S+S+ A+ + +N++ +DA +Y A N+Q I Sbjct: 118 TPGSDLYESC-GWATASLSARDIGANMYRPNAYNLNAQAMDATVDLIKAVYAAGVNVQEI 176 Query: 115 PRSALIDGRSIPEDLPCQA-----FAVIK------GDSISLSIAAASIIAKVTRDRLMRI 163 +D +I + QA F +K DS+ ++AAS+ AKVTRD + + Sbjct: 177 ----FVD--TIGQPAAYQAKLQRIFPTVKIIVAKKADSLYPCVSAASVCAKVTRDAALEV 230 Query: 164 AHKKYPD 170 + D Sbjct: 231 LFEARAD 237 >gi|145536391|ref|XP_001453923.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124421656|emb|CAK86526.1| unnamed protein product [Paramecium tetraurelia] Length = 3642 Score = 35.0 bits (79), Expect = 6.8, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 15/127 (11%) Query: 62 KISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 K S K E L AI +++ + YID I+K + ++N+Q+ +D Sbjct: 2808 KTSQNKFESL---AIQEAIEKVNTVNETYIDMIIINKQSAQWQIELLKNMQIDIEFINLD 2864 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAA--ASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 R++ +DL +IK DSI L I + I + D + RI H K H+ Y Sbjct: 2865 KRNVEQDL-----QIIKSDSIDLVITSDIEDINKLLDLDFVQRIKHLKK-----QLHISY 2914 Query: 180 PTAKHQQ 186 K +Q Sbjct: 2915 TKEKAKQ 2921 >gi|71896929|ref|NP_001025921.1| protein NEDD1 [Gallus gallus] gi|60098671|emb|CAH65166.1| hypothetical protein RCJMB04_5d16 [Gallus gallus] Length = 671 Score = 35.0 bits (79), Expect = 6.9, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 6/74 (8%) Query: 32 VGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK----REELYEKITSSAIISISSAS 87 + G+L+G +++ ++ + ++ PFG N S+ I H K ++ L ++ S +++ + Sbjct: 134 IASGSLSGEIILHSVTTNLSSTPFGYNSSQPIRHLKYSSFKKSLLGSVSDSGNVTLWDVN 193 Query: 88 HQ--YIDKHNIHKA 99 Q Y + N HKA Sbjct: 194 TQNPYRNFENTHKA 207 >gi|326203823|ref|ZP_08193685.1| ribonuclease HIII [Clostridium papyrosolvens DSM 2782] gi|325985921|gb|EGD46755.1| ribonuclease HIII [Clostridium papyrosolvens DSM 2782] Length = 302 Score = 35.0 bits (79), Expect = 7.2, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 15/97 (15%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-----PFGINDSKKISHKKREELYEKI 75 K ++P G DE G+G GP+V A +++ + G+ DSKK+S + KI Sbjct: 84 KTVFPRIGSDESGKGDFFGPLVTVAFLIENDKQVIELEKIGVRDSKKVSDNRI-----KI 138 Query: 76 TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ 112 S I I + DK I + +Y ++NL Sbjct: 139 ISQQIQEIGN-----FDKILITPIKYNELYDKIKNLN 170 >gi|76798409|ref|ZP_00780650.1| ribonuclease HIII [Streptococcus agalactiae 18RS21] gi|76586241|gb|EAO62758.1| ribonuclease HIII [Streptococcus agalactiae 18RS21] Length = 286 Score = 35.0 bits (79), Expect = 7.3, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 8/93 (8%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE 70 E+ E P+ G DEVG G+ G + V A + P + + G+ DSK ++ +K ++ Sbjct: 61 ESCSSESQDIPIIGTDEVGNGSYFGGLAVVASFVTPKDHAYLKKLGVGDSKTLTDQKIKQ 120 Query: 71 ---LYEK-ITSSAIISISSASHQYIDKHNIHKA 99 L EK I A++ +Q + +N H A Sbjct: 121 IAPLLEKAIPHKALLLSPQKYNQVVSPNNKHNA 153 >gi|193216613|ref|YP_001999855.1| ribonuclease HIII [Mycoplasma arthritidis 158L3-1] gi|193001936|gb|ACF07151.1| ribonuclease HIII [Mycoplasma arthritidis 158L3-1] Length = 236 Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust. Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 34/182 (18%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA---I 80 G+DE G G PV+ + + N+ G+ DSK + K EL K+ + Sbjct: 13 GVDETGVGDYFTPVISVSCFIPKTNLELVKELGVKDSKLLKENKIIELASKLKTLVKWKS 72 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHA--VEN-LQVIPR--SALID----GRSIPED--L 129 +++S A + + I+ + + H+ + N L+V+ + L+D R + E+ + Sbjct: 73 LTLSQAGYNKLISAKINNNEIKTLIHSKTINNLLKVLDQKVDVLVDQYTISRQVYENHLI 132 Query: 130 PCQA-------------FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 Q+ + K +S SL++A+ASIIA R L+ + Y F+ Sbjct: 133 KLQSIKWLDFQKPNATIYLTTKAESKSLAVASASIIA---RSILLEKIKAQREQYNFNFS 189 Query: 177 VG 178 +G Sbjct: 190 LG 191 >gi|73916756|gb|AAZ93246.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + + F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVAAFVTSDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|22537861|ref|NP_688712.1| ribonuclease HIII [Streptococcus agalactiae 2603V/R] gi|76787270|ref|YP_330330.1| ribonuclease HIII [Streptococcus agalactiae A909] gi|77405976|ref|ZP_00783055.1| ribonuclease HIII [Streptococcus agalactiae H36B] gi|77409445|ref|ZP_00786139.1| ribonuclease HIII [Streptococcus agalactiae COH1] gi|73917857|sp|Q8DXX3|RNH3_STRA5 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|123601321|sp|Q3JZH3|RNH3_STRA1 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|22534757|gb|AAN00585.1|AE014270_3 ribonuclease HIII [Streptococcus agalactiae 2603V/R] gi|76562327|gb|ABA44911.1| ribonuclease HIII [Streptococcus agalactiae A909] gi|77171937|gb|EAO75112.1| ribonuclease HIII [Streptococcus agalactiae COH1] gi|77175428|gb|EAO78218.1| ribonuclease HIII [Streptococcus agalactiae H36B] Length = 297 Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 8/93 (8%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE 70 E+ E P+ G DEVG G+ G + V A + P + + G+ DSK ++ +K ++ Sbjct: 72 ESCSSESQDIPIIGTDEVGNGSYFGGLAVVASFVTPKDHAYLKKLGVGDSKTLTDQKIKQ 131 Query: 71 ---LYEK-ITSSAIISISSASHQYIDKHNIHKA 99 L EK I A++ +Q + +N H A Sbjct: 132 IAPLLEKAIPHKALLLSPQKYNQVVSPNNKHNA 164 >gi|148993944|ref|ZP_01823314.1| ribonuclease HIII [Streptococcus pneumoniae SP9-BS68] gi|168488094|ref|ZP_02712293.1| ribonuclease hiii [Streptococcus pneumoniae SP195] gi|147927533|gb|EDK78560.1| ribonuclease HIII [Streptococcus pneumoniae SP9-BS68] gi|183572945|gb|EDT93473.1| ribonuclease hiii [Streptococcus pneumoniae SP195] gi|332075249|gb|EGI85719.1| ribonuclease HIII [Streptococcus pneumoniae GA17570] Length = 293 Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + + F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVAAFVTSDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|15674239|ref|NP_268414.1| ribonuclease HIII [Lactococcus lactis subsp. lactis Il1403] gi|281492933|ref|YP_003354913.1| ribonuclease HIII [Lactococcus lactis subsp. lactis KF147] gi|20978735|sp|Q9CDG3|RNH3_LACLA RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|12725328|gb|AAK06355.1|AE006455_1 ribonuclease HII [Lactococcus lactis subsp. lactis Il1403] gi|281376585|gb|ADA66071.1| Ribonuclease HIII [Lactococcus lactis subsp. lactis KF147] Length = 292 Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKK 67 G DEVG G+ G ++V A + N+ F G+ DSKK++ +K Sbjct: 80 GTDEVGNGSYFGGLMVTASFVSEENLNFLKEIGVADSKKLTDEK 123 >gi|323490479|ref|ZP_08095686.1| ribonuclease HIII [Planococcus donghaensis MPA1U2] gi|323395883|gb|EGA88722.1| ribonuclease HIII [Planococcus donghaensis MPA1U2] Length = 309 Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust. Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 25/155 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREEL---YEKITSS 78 V G DE G G GP+ VAA + + + G+ DSK+++ ++ ++ + Sbjct: 91 VLGSDETGTGDFFGPITVAACFVPSDKVELAYELGVKDSKQLTDDWMRKVAPDLKRAFAH 150 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI-------PRSALIDG---RSI--- 125 +++++ + + + + + A+ H V+ P + LID RSI Sbjct: 151 SVLTLKNDKYNKVQAQGWSQGKIKALLHNQALKHVLAKIAPEKPDAILIDQFAERSIYYK 210 Query: 126 -----PEDLPCQAFAVIKGDSISLSIAAASIIAKV 155 E + K + + +S+A ASIIA+V Sbjct: 211 HIKEETEIVRENVLFSTKAEGLHVSVACASIIARV 245 >gi|25011806|ref|NP_736201.1| ribonuclease HIII [Streptococcus agalactiae NEM316] gi|77413664|ref|ZP_00789848.1| ribonuclease HIII [Streptococcus agalactiae 515] gi|73917856|sp|Q8E3J2|RNH3_STRA3 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|24413347|emb|CAD47426.1| Unknown [Streptococcus agalactiae NEM316] gi|77160264|gb|EAO71391.1| ribonuclease HIII [Streptococcus agalactiae 515] Length = 297 Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE 70 E+ E P+ G DEVG G+ G + V A + P + + G+ DSK ++ +K ++ Sbjct: 72 ESCSSETQDIPIIGTDEVGNGSYFGGLAVVASFVTPKDHAYLKKLGVGDSKTLTDQKIKQ 131 Query: 71 L 71 + Sbjct: 132 I 132 >gi|168490684|ref|ZP_02714827.1| ribonuclease hiii [Streptococcus pneumoniae CDC0288-04] gi|73916720|gb|AAZ93228.1| RNase HII [Streptococcus pneumoniae] gi|183574806|gb|EDT95334.1| ribonuclease hiii [Streptococcus pneumoniae CDC0288-04] gi|332202313|gb|EGJ16382.1| ribonuclease HIII [Streptococcus pneumoniae GA41317] Length = 290 Score = 34.7 bits (78), Expect = 8.7, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 9/81 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE----LYEKI 75 P+ G DEVG G+ G + V A + + F G+ DSK ++ +K + L EKI Sbjct: 78 LPLIGTDEVGNGSYFGGLAVVAAFVTSDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHN 95 A++ S ++ I D++N Sbjct: 138 QHQALLLSPSKYNEVIGDRYN 158 >gi|77412143|ref|ZP_00788466.1| ribonuclease HIII [Streptococcus agalactiae CJB111] gi|77161803|gb|EAO72791.1| ribonuclease HIII [Streptococcus agalactiae CJB111] Length = 297 Score = 34.7 bits (78), Expect = 8.8, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 8/93 (8%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE 70 E+ E P+ G DEVG G+ G + V A + P + + G+ DSK ++ +K ++ Sbjct: 72 ESCSSESQDIPIIGTDEVGNGSYFGGLAVVASFVTPKDHAYLKKLGVGDSKTLTDQKIKQ 131 Query: 71 ---LYEK-ITSSAIISISSASHQYIDKHNIHKA 99 L EK I A++ +Q + +N H A Sbjct: 132 TAPLLEKAIPHKALLLSPQKYNQVVGPNNKHNA 164 >gi|148673842|gb|EDL05789.1| mCG129830, isoform CRA_b [Mus musculus] Length = 142 Score = 34.7 bits (78), Expect = 9.0, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKI 75 V G+DE GRG + GP+V A + + + DSK ++ +RE L+ K+ Sbjct: 1 VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKM 54 Searching..................................................done Results from round 2 >gi|254781076|ref|YP_003065489.1| ribonuclease HII [Candidatus Liberibacter asiaticus str. psy62] gi|254040753|gb|ACT57549.1| ribonuclease HII [Candidatus Liberibacter asiaticus str. psy62] Length = 209 Score = 340 bits (873), Expect = 8e-92, Method: Composition-based stats. Identities = 209/209 (100%), Positives = 209/209 (100%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS Sbjct: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI Sbjct: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP Sbjct: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209 TAKHQQVIKEKGPSCIHRLTFRPLRNLSV Sbjct: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209 >gi|328957389|ref|YP_004374775.1| ribonuclease HII [Carnobacterium sp. 17-4] gi|328673713|gb|AEB29759.1| ribonuclease HII [Carnobacterium sp. 17-4] Length = 257 Score = 288 bits (737), Expect = 4e-76, Method: Composition-based stats. Identities = 99/202 (49%), Positives = 127/202 (62%), Gaps = 3/202 (1%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 ++ ++E E+ VAGIDEVGRG LAGPVV AA+IL + INDSK++S Sbjct: 56 KQQEMLQIEQFFWEQGTQFVAGIDEVGRGPLAGPVVAAAVILPQDFNVLEINDSKQLSSA 115 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KRE L+++I SA+ I I HQ IDK NI++AT A+ AVE L P LID + Sbjct: 116 KREVLFDQIQESALAIGIGIKDHQVIDKVNIYQATKLAMIEAVEQLPQQPEQLLIDAMHL 175 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P +P ++F IKGDS SLSIAAASIIAKVTRDR+M YP YGF + GY T H Sbjct: 176 PITIPQESF--IKGDSKSLSIAAASIIAKVTRDRMMAEYDTLYPGYGFSKNAGYGTKIHL 233 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 + +++ G IHR TF P++NL Sbjct: 234 EGLEKHGICPIHRKTFAPVKNL 255 >gi|116250704|ref|YP_766542.1| ribonuclease HII [Rhizobium leguminosarum bv. viciae 3841] gi|166226643|sp|Q1MKS7|RNH2_RHIL3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|115255352|emb|CAK06427.1| putative ribonuclease HII [Rhizobium leguminosarum bv. viciae 3841] Length = 229 Score = 286 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 107/206 (51%), Positives = 145/206 (70%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 + ++ P P F LE R+ WPVAG DE GRG LAGPVV AA+ILDP IP G+NDS Sbjct: 11 LLFDTAPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDS 70 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K++S ++REEL+ +I ++A +SI+S+S ID+ +I KA+LDA+ A+ +L + L Sbjct: 71 KQLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAIPASYVLT 130 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG +P L C AV+KGD+ S+SIAAASI+AKVTRDR+M AH +PDYGF +HVGY Sbjct: 131 DGLDVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMARAHSVFPDYGFAAHVGYG 190 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206 TA+H+ I+ GP +HR++FRPLR Sbjct: 191 TAQHRAGIERHGPCSLHRMSFRPLRK 216 >gi|241203307|ref|YP_002974403.1| ribonuclease HII [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857197|gb|ACS54864.1| Ribonuclease H [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 229 Score = 286 bits (733), Expect = 1e-75, Method: Composition-based stats. Identities = 107/206 (51%), Positives = 145/206 (70%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 + ++ P P F LE R+ WPVAG DE GRG LAGPVV AA+ILDP IP G+NDS Sbjct: 11 LLFDTAPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPRRIPEGLNDS 70 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K++S ++REEL+ +I ++A +SI+S+S ID+ +I KA+LDA+ A+ +L + L Sbjct: 71 KQLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAIPASYVLT 130 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG +P L C AV+KGD+ S+SIAAASI+AKVTRDR+M AH +PDYGF +HVGY Sbjct: 131 DGLDVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMARAHSVFPDYGFAAHVGYG 190 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206 TA+H+ I+ GP +HR++FRPLR Sbjct: 191 TAQHRAGIERHGPCSLHRMSFRPLRK 216 >gi|327190563|gb|EGE57656.1| ribonuclease HII protein [Rhizobium etli CNPAF512] Length = 229 Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats. Identities = 107/206 (51%), Positives = 145/206 (70%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 + ++ P P F LE R+ WPVAG DE GRG LAGPVV AA+ILDP IP G+NDS Sbjct: 11 LLFDTAPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDS 70 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K++S ++REEL+ +I ++A +SI+S+S ID+ +I KA+LDA+ A+ +L V L Sbjct: 71 KQLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAVPASYVLT 130 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG +P L C AV+KGD+ S+SIAAASI+AKVTRDR+M AH +PDYGF +H GY Sbjct: 131 DGLDVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMARAHNVFPDYGFAAHAGYG 190 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206 TA+H+ I++ GP +HR++FRPLR Sbjct: 191 TAQHRAGIEKHGPCSLHRMSFRPLRK 216 >gi|190890579|ref|YP_001977121.1| ribonuclease HII protein [Rhizobium etli CIAT 652] gi|238692497|sp|B3PRG0|RNH2_RHIE6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|190695858|gb|ACE89943.1| ribonuclease HII protein [Rhizobium etli CIAT 652] Length = 229 Score = 285 bits (729), Expect = 3e-75, Method: Composition-based stats. Identities = 107/206 (51%), Positives = 145/206 (70%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 + ++ P P F LE R+ WPVAG DE GRG LAGPVV AA+ILDP IP G+NDS Sbjct: 11 LLFDTAPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDS 70 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K++S ++REEL+ +I ++A +SI+S+S ID+ +I KA+LDA+ A+ +L V L Sbjct: 71 KQLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAVPASYVLT 130 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG +P L C AV+KGD+ S+SIAAASI+AKVTRDR+M AH +PDYGF +H GY Sbjct: 131 DGLDVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMARAHNVFPDYGFAAHAGYG 190 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206 TA+H+ I++ GP +HR++FRPLR Sbjct: 191 TAQHRTGIEKHGPCSLHRMSFRPLRK 216 >gi|86356514|ref|YP_468406.1| ribonuclease HII [Rhizobium etli CFN 42] gi|123512870|sp|Q2KBV7|RNH2_RHIEC RecName: Full=Ribonuclease HII; Short=RNase HII gi|86280616|gb|ABC89679.1| ribonuclease HII protein [Rhizobium etli CFN 42] Length = 229 Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats. Identities = 106/206 (51%), Positives = 147/206 (71%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 + +++P P F+LE R+ WPVAG DE GRG LAGPVV AA+ILDP IP G+NDS Sbjct: 11 LLFDTVPLVPDFKLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDS 70 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K++S ++REEL+ +I ++A +SI+S+S ID+ +I KA+LDA+ A+ +L + L Sbjct: 71 KQLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAIPASYVLT 130 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG +P L C AV+KGD+ S+SIAAASI+AKVTRDR+M AH +PDYGF +H GY Sbjct: 131 DGLDVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMARAHNVFPDYGFAAHAGYG 190 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206 TA+H+ I++ GP +HR++FRPLR Sbjct: 191 TAQHRAGIEKHGPCSLHRMSFRPLRK 216 >gi|315122464|ref|YP_004062953.1| ribonuclease HII [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495866|gb|ADR52465.1| ribonuclease HII [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 209 Score = 284 bits (728), Expect = 4e-75, Method: Composition-based stats. Identities = 158/200 (79%), Positives = 181/200 (90%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E+P+FE E MVR+K MWPVAGIDEVGRGALAG VVVAAIILDPNNIP GINDSKKI KK Sbjct: 8 EKPNFEFEIMVRQKKMWPVAGIDEVGRGALAGSVVVAAIILDPNNIPPGINDSKKIPPKK 67 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 RE LYEKI +SAI+SI+SA ++YID+HNIHKATLD +Y A+ NL++ PRS LIDGRSIPE Sbjct: 68 REYLYEKIINSAIVSIASAGNRYIDQHNIHKATLDTMYRAINNLKITPRSVLIDGRSIPE 127 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +LPCQAFA+IKGDS SLSIAAASI+AKVTRDRLM++AHKKYPDYGFDSHVGYPT KH+Q Sbjct: 128 NLPCQAFAIIKGDSSSLSIAAASIVAKVTRDRLMKMAHKKYPDYGFDSHVGYPTVKHRQA 187 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 IKEKGPS IHR++FRPL++L Sbjct: 188 IKEKGPSRIHRMSFRPLKDL 207 >gi|126724759|ref|ZP_01740602.1| ribonuclease HII [Rhodobacterales bacterium HTCC2150] gi|126705923|gb|EBA05013.1| ribonuclease HII [Rhodobacterales bacterium HTCC2150] Length = 209 Score = 284 bits (728), Expect = 4e-75, Method: Composition-based stats. Identities = 99/198 (50%), Positives = 137/198 (69%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + E +K + VAG+DEVGRG LAGPV AA+ILDP+NIP G+NDSKK+S KKR+ Sbjct: 6 PDYSFERAAIDKGIKIVAGVDEVGRGPLAGPVTAAAVILDPDNIPEGLNDSKKLSAKKRD 65 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+++I + A++SI+ AS ID+ NI +A+ A+ A++ L +P+ ALIDGR IP++ Sbjct: 66 LLFDQIMNVAMVSIAHASVAEIDEINIRQASHLAMVRAIQGLDQLPQLALIDGRDIPKET 125 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 PC A+IKGD S+SIAAASI+AKVTRDRLM + +P YG+D + GYPT H + Sbjct: 126 PCSGQAIIKGDGKSMSIAAASIVAKVTRDRLMVDLAQHHPGYGWDKNAGYPTKSHIAALN 185 Query: 190 EKGPSCIHRLTFRPLRNL 207 E G + HR +F P+ + Sbjct: 186 ELGVTQHHRCSFGPVHKM 203 >gi|83941807|ref|ZP_00954269.1| ribonuclease HII [Sulfitobacter sp. EE-36] gi|83847627|gb|EAP85502.1| ribonuclease HII [Sulfitobacter sp. EE-36] Length = 238 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 131/199 (65%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P FE E + VAG+DEVGRG LAGPV AA++LDP+ IP G+NDSKK++ R Sbjct: 35 KPDFEFERAAHARGFERVAGVDEVGRGPLAGPVTAAAVVLDPDRIPEGLNDSKKLTKTAR 94 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E LYE++ A +S++ AS + I++ NI +A+ A+ A+E L+ ALIDG IP D Sbjct: 95 ERLYEELLQVADVSVAHASVEEIEELNILRASHLAMLRALEGLKTPADYALIDGNMIPRD 154 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L A V+KGD+ S SI+AASI AK+ RD +M +++P YG+++++GY + KH + + Sbjct: 155 LTLPAETVVKGDARSQSISAASIAAKICRDCVMLSLAQQHPGYGWETNMGYGSKKHMEAL 214 Query: 189 KEKGPSCIHRLTFRPLRNL 207 ++ G + HR F+P+ N+ Sbjct: 215 QKIGVTPHHRRLFKPVHNM 233 >gi|209548122|ref|YP_002280039.1| ribonuclease HII [Rhizobium leguminosarum bv. trifolii WSM2304] gi|238056781|sp|B5ZS20|RNH2_RHILW RecName: Full=Ribonuclease HII; Short=RNase HII gi|209533878|gb|ACI53813.1| Ribonuclease H [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 229 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 108/207 (52%), Positives = 146/207 (70%) Query: 2 FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61 ++P P F LE R+ WPVAG DE GRG LAGPVV AA+ILDP IP G+NDSK Sbjct: 12 LFQAVPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDSK 71 Query: 62 KISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 ++S ++REEL+ +I ++A +SI+S+S ID+ +I KA+LDA+ A+ +L + L D Sbjct: 72 QLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAIPASYVLTD 131 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 G +P L C AVIKGD+ S+SIAAASI+AKVTRDR+M AH +PDYGF +HVGY T Sbjct: 132 GLDVPPGLDCPGQAVIKGDARSVSIAAASIVAKVTRDRMMARAHHVFPDYGFAAHVGYGT 191 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNLS 208 A+H+ I++ GP +HR++FRPLR + Sbjct: 192 AQHRAGIEKLGPCSLHRMSFRPLRKVE 218 >gi|182677913|ref|YP_001832059.1| ribonuclease H [Beijerinckia indica subsp. indica ATCC 9039] gi|182633796|gb|ACB94570.1| Ribonuclease H [Beijerinckia indica subsp. indica ATCC 9039] Length = 210 Score = 281 bits (720), Expect = 3e-74, Method: Composition-based stats. Identities = 100/200 (50%), Positives = 132/200 (66%), Gaps = 1/200 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 S P +P F E +R++ +AGIDEVGRG LAGPV AA+ILDP N+P G+NDSK +S Sbjct: 7 SNPSQPDFTFEKRLRKRGFTLIAGIDEVGRGPLAGPVTAAAVILDPKNLPQGLNDSKMLS 66 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 ++RE LY+ I + A+ ++I+ ID+ NI +ATL A+ + L + P L+DG Sbjct: 67 AEQREALYDLILARALAVAIACVGPGEIDRINIRQATLTAMRRTLPALALAPHYVLVDGN 126 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +PEDL C +IKGD+ SLSIAAASI+AKV RDRLM+ YP YGF++HVGY T Sbjct: 127 DLPEDLGCPGETIIKGDARSLSIAAASIVAKVARDRLMQRLSALYPAYGFENHVGYATQA 186 Query: 184 HQQVIKEKGPSCIHRLTFRP 203 H I+ GP IHRL+F P Sbjct: 187 HLTAIEAYGPCPIHRLSFSP 206 >gi|84687971|ref|ZP_01015835.1| ribonuclease HII [Maritimibacter alkaliphilus HTCC2654] gi|84664003|gb|EAQ10503.1| ribonuclease HII [Rhodobacterales bacterium HTCC2654] Length = 208 Score = 281 bits (720), Expect = 4e-74, Method: Composition-based stats. Identities = 94/202 (46%), Positives = 133/202 (65%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + + P + E + + VAG+DEVGRG LAGPV AA+IL P+NIP G+NDSKK+S Sbjct: 1 MTDGPDYSYETAAFARGLARVAGVDEVGRGPLAGPVTAAAVILGPDNIPDGLNDSKKLSA 60 Query: 66 KKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KKR+ L++ I + A + I+ A+ + ID +NI +A+ A+ AVE L +P LIDG I Sbjct: 61 KKRDALFDAIMAGAQVGIAHATVEEIDTYNILRASHIAMLRAVEALGTVPDHLLIDGNLI 120 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P A AVIKGD SLSIAAASI+AKVTRDR+M +++P YG++ + GYP+ H Sbjct: 121 PRGCTVSAEAVIKGDGKSLSIAAASIVAKVTRDRIMVDLAQQHPGYGWERNAGYPSKSHI 180 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 ++E G + HR +F+P+ N+ Sbjct: 181 SALQELGVTPHHRRSFKPVHNI 202 >gi|229061440|ref|ZP_04198785.1| Ribonuclease [Bacillus cereus AH603] gi|228717863|gb|EEL69511.1| Ribonuclease [Bacillus cereus AH603] Length = 257 Score = 280 bits (717), Expect = 9e-74, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YENELREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID+ NI++AT A+ AV NL P LID +P +P Sbjct: 122 EIKEHAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPEYLLIDAMKLPTSIP-- 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGGKYPAYGFEQHMGYGTKQHLEAIEVHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|228954113|ref|ZP_04116142.1| Ribonuclease [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229081092|ref|ZP_04213602.1| Ribonuclease [Bacillus cereus Rock4-2] gi|228702136|gb|EEL54612.1| Ribonuclease [Bacillus cereus Rock4-2] gi|228805679|gb|EEM52269.1| Ribonuclease [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 257 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID NI++AT A+ AV NL P+ LID +P P Sbjct: 122 EIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPQYGFEQHMGYGTKQHLEAIQVHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLDEHRKSFAPIKDM 254 >gi|218233890|ref|YP_002368638.1| ribonuclease HII [Bacillus cereus B4264] gi|226736814|sp|B7HDW0|RNH2_BACC4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|218161847|gb|ACK61839.1| ribonuclease HII [Bacillus cereus B4264] Length = 257 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 128/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YENALREKGITYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID NI++AT A+ AV NL P+ LID +P P Sbjct: 122 EIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP+YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEAIEVHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLDEHRKSFAPIKDM 254 >gi|228922591|ref|ZP_04085891.1| Ribonuclease [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837020|gb|EEM82361.1| Ribonuclease [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 254 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 94/195 (48%), Positives = 128/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KRE Y+ Sbjct: 59 YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYD 118 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID NI++AT A+ AV NL P+ LID +P P Sbjct: 119 EIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 176 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP+YGF+ H+GY T +H + I+ G Sbjct: 177 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEAIEVHG 236 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 237 VLDEHRKSFAPIKDM 251 >gi|228940925|ref|ZP_04103484.1| Ribonuclease [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973854|ref|ZP_04134430.1| Ribonuclease [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980444|ref|ZP_04140754.1| Ribonuclease [Bacillus thuringiensis Bt407] gi|228779264|gb|EEM27521.1| Ribonuclease [Bacillus thuringiensis Bt407] gi|228785879|gb|EEM33882.1| Ribonuclease [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818761|gb|EEM64827.1| Ribonuclease [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941606|gb|AEA17502.1| ribonuclease HII [Bacillus thuringiensis serovar chinensis CT-43] Length = 257 Score = 279 bits (715), Expect = 1e-73, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 129/195 (66%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID+ NI++AT A+ AV NL P+ LID +P P Sbjct: 122 EIKVQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSYTPQHLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP+YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEAIEVHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|229071335|ref|ZP_04204558.1| Ribonuclease [Bacillus cereus F65185] gi|229180113|ref|ZP_04307457.1| Ribonuclease [Bacillus cereus 172560W] gi|228603322|gb|EEK60799.1| Ribonuclease [Bacillus cereus 172560W] gi|228711789|gb|EEL63741.1| Ribonuclease [Bacillus cereus F65185] Length = 254 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 59 YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 118 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID NI++AT A+ AV NL P+ LID +P P Sbjct: 119 EIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 176 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 177 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPQYGFEQHMGYGTKQHLEAIQVHG 236 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 237 VLDEHRKSFAPIKDM 251 >gi|229013020|ref|ZP_04170185.1| Ribonuclease [Bacillus mycoides DSM 2048] gi|229134645|ref|ZP_04263454.1| Ribonuclease [Bacillus cereus BDRD-ST196] gi|229168576|ref|ZP_04296299.1| Ribonuclease [Bacillus cereus AH621] gi|228614982|gb|EEK72084.1| Ribonuclease [Bacillus cereus AH621] gi|228648691|gb|EEL04717.1| Ribonuclease [Bacillus cereus BDRD-ST196] gi|228748274|gb|EEL98134.1| Ribonuclease [Bacillus mycoides DSM 2048] Length = 257 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YENELREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID+ NI++AT A+ AV NL P LID +P +P Sbjct: 122 EIKEHAIAIGVGIISPQVIDEINIYQATKQAMLDAVANLSCTPEYLLIDAMKLPTSIP-- 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGGKYPAYGFEQHMGYGTKQHLEAIEVHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|330722242|gb|EGH00125.1| Ribonuclease HII [gamma proteobacterium IMCC2047] Length = 203 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 92/186 (49%), Positives = 119/186 (63%), Gaps = 2/186 (1%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81 + VAG+DEVGRG LAGPVV AA+IL+P N G+ DSKK++ K+RE L+ I A+ Sbjct: 9 LGLVAGVDEVGRGPLAGPVVAAAVILNPANPIEGLADSKKLTEKRREALFPLIQERALAW 68 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I+ AS ID+ NI A+L A+ AV L P L+DG P DLP + A+IKGDS Sbjct: 69 CIARASEAEIDRLNILHASLLAMRRAVLGLSQQPDRVLVDGNRCP-DLPYPSEAIIKGDS 127 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +I+AASI+AKV RD M + YP YGF H GYPTA+H Q +K G + IHR +F Sbjct: 128 KIEAISAASILAKVVRDNEMVAFEETYPGYGFAKHKGYPTAQHMQALKTLGVTPIHRRSF 187 Query: 202 RPLRNL 207 P++NL Sbjct: 188 APVKNL 193 >gi|229192006|ref|ZP_04318976.1| Ribonuclease [Bacillus cereus ATCC 10876] gi|228591557|gb|EEK49406.1| Ribonuclease [Bacillus cereus ATCC 10876] Length = 254 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 92/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 59 YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 118 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S + ID NI++AT A+ AV NL P+ LID +P P Sbjct: 119 EIKVQAIAIGVGIVSPEVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 176 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 177 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPQYGFEQHMGYGTKQHLEAIQVHG 236 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 237 VLDEHRKSFAPIKDM 251 >gi|83855284|ref|ZP_00948814.1| ribonuclease HII [Sulfitobacter sp. NAS-14.1] gi|83843127|gb|EAP82294.1| ribonuclease HII [Sulfitobacter sp. NAS-14.1] Length = 205 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 131/199 (65%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P FE E + VAG+DEVGRG LAGPV AA++LDP+ IP G+NDSKK++ R Sbjct: 2 KPDFEFERAAHARGFERVAGVDEVGRGPLAGPVTAAAVVLDPDRIPEGLNDSKKLTKPAR 61 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E LYE++ A +S++ AS + I++ NI +A+ A+ A+E L+ ALIDG IP D Sbjct: 62 ERLYEELLQVADVSVAHASVEEIEELNILRASHLAMLRALEGLKTPADYALIDGNVIPRD 121 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L A VIKGD+ S SI+AASI AK+ RD +M +++P YG+++++GY + KH + + Sbjct: 122 LTLPAEPVIKGDARSQSISAASIAAKICRDCVMLSLAQQHPGYGWETNMGYGSKKHMEAL 181 Query: 189 KEKGPSCIHRLTFRPLRNL 207 ++ G + HR F+P+ N+ Sbjct: 182 QKIGVTPHHRRLFKPVHNM 200 >gi|332686610|ref|YP_004456384.1| ribonuclease HII [Melissococcus plutonius ATCC 35311] gi|332370619|dbj|BAK21575.1| ribonuclease HII [Melissococcus plutonius ATCC 35311] Length = 260 Score = 278 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 94/196 (47%), Positives = 130/196 (66%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E ++ +AGIDEVGRG LAGPVV AA+IL + F +NDSK++S K RE L+ Sbjct: 64 QFEKKAMQEGYQAIAGIDEVGRGPLAGPVVAAAVILPEDCQIFELNDSKQLSAKTRERLF 123 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I A+ I I SH+ ID+ NI++AT A+ AV NLQ IP LID ++P L Sbjct: 124 DEIGKKALAIGIGLVSHETIDEINIYQATKQAMIQAVANLQRIPDYLLIDAMTLP--LTT 181 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ SLSIAAASI+AKVTRDRLM ++P YGF+ + GY T +H + +K++ Sbjct: 182 IQQSIIKGDARSLSIAAASIVAKVTRDRLMVHYAAEFPGYGFEKNAGYGTKEHLEGLKKQ 241 Query: 192 GPSCIHRLTFRPLRNL 207 G S IHR TF P++ + Sbjct: 242 GISPIHRKTFAPIKTM 257 >gi|229104399|ref|ZP_04235068.1| Ribonuclease [Bacillus cereus Rock3-28] gi|228679097|gb|EEL33305.1| Ribonuclease [Bacillus cereus Rock3-28] Length = 257 Score = 278 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 129/195 (66%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L N G++DSKK+S KRE Y+ Sbjct: 62 YENALREKGITYIAGIDEVGRGPLAGPVVTAAVVLPDNFYIPGLDDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ AV NL P+ LID +P +P Sbjct: 122 EIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPTSIP-- 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPAYGFGQHMGYGTKQHLEAIEAHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|118590790|ref|ZP_01548191.1| ribonuclease HII [Stappia aggregata IAM 12614] gi|118436766|gb|EAV43406.1| ribonuclease HII [Stappia aggregata IAM 12614] Length = 228 Score = 278 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 94/205 (45%), Positives = 133/205 (64%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 +F + P+ P +E + G+DE GRG AGPVV AA+ILD + +P G+NDS Sbjct: 19 LFDLAFPDSPDLAVERKHAAAFDGRLCGVDEAGRGPWAGPVVTAAVILDYDRLPDGLNDS 78 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 KK++ +REEL+E+I +SA +S++SAS ID NI ATL A+ AV +L ++P L+ Sbjct: 79 KKLTEARREELFEQIVASAHVSLASASPATIDAVNIRTATLSAMVRAVNHLPLVPDYVLV 138 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DGR +P L A+IKGD L +AAASI+AKVTRDR+M ++PDYGF H GY Sbjct: 139 DGRDVPLGLKQAGQALIKGDGRCLCVAAASIVAKVTRDRMMVHLDARFPDYGFAQHKGYG 198 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLR 205 +HQQ ++ GP+ HR++F+P+R Sbjct: 199 VPQHQQALERHGPTVHHRMSFKPVR 223 >gi|30021925|ref|NP_833556.1| ribonuclease HII [Bacillus cereus ATCC 14579] gi|39932341|sp|Q819W9|RNH2_BACCR RecName: Full=Ribonuclease HII; Short=RNase HII gi|29897481|gb|AAP10757.1| Ribonuclease HII [Bacillus cereus ATCC 14579] Length = 257 Score = 278 bits (713), Expect = 3e-73, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID NI++AT A+ AV NL P+ LID +P P Sbjct: 122 EIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ KYP+YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGGKYPEYGFEQHMGYGTKQHLEAIEVHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLDEHRKSFAPIKDM 254 >gi|325292105|ref|YP_004277969.1| Ribonuclease HII [Agrobacterium sp. H13-3] gi|325059958|gb|ADY63649.1| Ribonuclease HII [Agrobacterium sp. H13-3] Length = 224 Score = 278 bits (713), Expect = 3e-73, Method: Composition-based stats. Identities = 104/197 (52%), Positives = 137/197 (69%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E R+K +WPVAG DE GRG LAGPVV AA+ILDP+NIP G++DSKK++ KRE Sbjct: 27 PDFSFELEARKKGLWPVAGTDEAGRGPLAGPVVAAAVILDPDNIPGGLDDSKKLTKLKRE 86 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ +I ++I+S++S+ ID NI +A+LDA+ AV L++ P L DGR P + Sbjct: 87 SLFLQIMETSIVSVASSGPGLIDTMNILRASLDAMRRAVLGLEISPALVLADGRDKPPGI 146 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C++ AVIKGDS SLSIAAASIIAKVTRDR+M A + YGF+ H GY T H + I+ Sbjct: 147 TCESKAVIKGDSRSLSIAAASIIAKVTRDRMMERAGVVHSSYGFEGHAGYGTPAHLRAIE 206 Query: 190 EKGPSCIHRLTFRPLRN 206 GP +HR++FRPL+ Sbjct: 207 SHGPCPLHRMSFRPLKQ 223 >gi|229098306|ref|ZP_04229253.1| Ribonuclease [Bacillus cereus Rock3-29] gi|229117323|ref|ZP_04246701.1| Ribonuclease [Bacillus cereus Rock1-3] gi|228666223|gb|EEL21687.1| Ribonuclease [Bacillus cereus Rock1-3] gi|228685204|gb|EEL39135.1| Ribonuclease [Bacillus cereus Rock3-29] Length = 257 Score = 278 bits (713), Expect = 3e-73, Method: Composition-based stats. Identities = 92/195 (47%), Positives = 129/195 (66%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G++DSKK+S KRE Y+ Sbjct: 62 YENALREKGITYIAGIDEVGRGPLAGPVVTAAVVLPDDFYIPGLDDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ AV NL P+ LID +P +P Sbjct: 122 EIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPTSIP-- 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPAYGFGQHMGYGTKQHLEAIEAHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|228960053|ref|ZP_04121717.1| Ribonuclease [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047524|ref|ZP_04193114.1| Ribonuclease [Bacillus cereus AH676] gi|229111308|ref|ZP_04240861.1| Ribonuclease [Bacillus cereus Rock1-15] gi|229146408|ref|ZP_04274779.1| Ribonuclease [Bacillus cereus BDRD-ST24] gi|229152036|ref|ZP_04280231.1| Ribonuclease [Bacillus cereus m1550] gi|228631385|gb|EEK88019.1| Ribonuclease [Bacillus cereus m1550] gi|228637041|gb|EEK93500.1| Ribonuclease [Bacillus cereus BDRD-ST24] gi|228672084|gb|EEL27375.1| Ribonuclease [Bacillus cereus Rock1-15] gi|228723771|gb|EEL75126.1| Ribonuclease [Bacillus cereus AH676] gi|228799569|gb|EEM46522.1| Ribonuclease [Bacillus thuringiensis serovar pakistani str. T13001] Length = 254 Score = 278 bits (713), Expect = 3e-73, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 128/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 59 YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 118 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID NI++AT A+ AV NL P+ LID +P P Sbjct: 119 EIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 176 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP+YGF+ H+GY T +H + I+ G Sbjct: 177 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEAIEVHG 236 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 237 VLDEHRKSFAPIKDM 251 >gi|163941575|ref|YP_001646459.1| ribonuclease HII [Bacillus weihenstephanensis KBAB4] gi|229564282|sp|A9VT75|RNH2_BACWK RecName: Full=Ribonuclease HII; Short=RNase HII gi|163863772|gb|ABY44831.1| Ribonuclease H [Bacillus weihenstephanensis KBAB4] Length = 257 Score = 278 bits (712), Expect = 3e-73, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YENELREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID+ NI++AT A+ AV NL P LID +P +P Sbjct: 122 EIKDHAIAIGVGIISPQVIDEINIYQATKQAMLDAVANLSCTPEYLLIDAMKLPTSIP-- 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGGKYPAYGFEQHMGYGTKQHLEAIEVHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|222147705|ref|YP_002548662.1| ribonuclease HII [Agrobacterium vitis S4] gi|221734693|gb|ACM35656.1| ribonuclease HII [Agrobacterium vitis S4] Length = 279 Score = 278 bits (712), Expect = 3e-73, Method: Composition-based stats. Identities = 105/196 (53%), Positives = 135/196 (68%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F LE + K WPVAG DE GRG LAGPVV AA+ILDP+ IP G+NDSKK++ KRE Sbjct: 79 PDFSLEESFKAKGCWPVAGTDEAGRGPLAGPVVAAAVILDPDAIPDGLNDSKKLTAAKRE 138 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ +I ++A +SI+S+ +ID+ +I KA+LDA+ A L + P L DGR +P L Sbjct: 139 ALFIQILATATVSIASSGSDHIDRRDIRKASLDAMRRAAAGLSLAPAHLLCDGRDVPPGL 198 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C AVIKGD+ SLSIAAASI+AKV RDR+M A +P YGFD+H GY T HQ+ I Sbjct: 199 ICGGTAVIKGDARSLSIAAASIVAKVMRDRMMTRAALVFPQYGFDAHAGYGTKVHQKAIA 258 Query: 190 EKGPSCIHRLTFRPLR 205 + GP +HR++F PLR Sbjct: 259 DHGPCPLHRMSFSPLR 274 >gi|255261565|ref|ZP_05340907.1| ribonuclease HII [Thalassiobium sp. R2A62] gi|255103900|gb|EET46574.1| ribonuclease HII [Thalassiobium sp. R2A62] Length = 205 Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats. Identities = 93/197 (47%), Positives = 131/197 (66%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 FE E V G+DEVGRG LAGPV AA+ LDPN IP G+NDSKK+S KKR+ Sbjct: 4 DFEFERAAMADGALRVVGVDEVGRGPLAGPVTAAAVWLDPNAIPEGLNDSKKLSAKKRDA 63 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 LY ++ A +SI+ A+ + ID+HNI +A+ A+ AVE L V P ALIDG +P P Sbjct: 64 LYAELLQVADVSIAHATVEEIDEHNILRASHIAMIRAVEGLAVAPDYALIDGNMVPRGFP 123 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 Q+ +IKGD+ S+SI+AASI+AKV RD +M +++P+YG+DS+ GYP+ H+ + + Sbjct: 124 IQSQTIIKGDARSVSISAASIMAKVCRDYVMVDLAQQHPEYGWDSNAGYPSKSHKNALLK 183 Query: 191 KGPSCIHRLTFRPLRNL 207 G + HR +F+P+ N+ Sbjct: 184 YGVTPHHRRSFKPVHNI 200 >gi|229129113|ref|ZP_04258086.1| Ribonuclease [Bacillus cereus BDRD-Cer4] gi|228654350|gb|EEL10215.1| Ribonuclease [Bacillus cereus BDRD-Cer4] Length = 254 Score = 277 bits (710), Expect = 5e-73, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 59 YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 118 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID NI++AT A+ AV NL P+ LID +P P Sbjct: 119 EIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 176 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ KYP+YGF+ H+GY T +H + I+ G Sbjct: 177 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGGKYPEYGFEQHMGYGTKQHLEAIEVHG 236 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 237 VLDEHRKSFAPIKDM 251 >gi|126738666|ref|ZP_01754371.1| ribonuclease HII [Roseobacter sp. SK209-2-6] gi|126720465|gb|EBA17171.1| ribonuclease HII [Roseobacter sp. SK209-2-6] Length = 205 Score = 277 bits (710), Expect = 6e-73, Method: Composition-based stats. Identities = 92/200 (46%), Positives = 125/200 (62%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E+P LE R+ +AG+DEVGRG LAGPV AA+IL P G+NDSKK+S KK Sbjct: 2 EQPDDSLEQTARKNGYPRIAGVDEVGRGPLAGPVTAAAVILPLEGYPQGLNDSKKLSAKK 61 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 R L E+I +A +SI+ AS + ID NI KA+ A+ AV L P LIDG IP Sbjct: 62 RAVLAEEILQTAEVSIAEASVEEIDSINILKASHLAMERAVAALDPAPDYLLIDGNLIPA 121 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L A AVIKGD S+SIAAASI+AK RD M +++P YG++ + GYP+ +H++ Sbjct: 122 GLTIPAEAVIKGDGKSVSIAAASIVAKEARDECMVDLAQQFPGYGWEKNAGYPSKQHREA 181 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 ++E G + HR +F+P+ + Sbjct: 182 LQELGVTPHHRKSFKPVHKI 201 >gi|331701419|ref|YP_004398378.1| ribonuclease H [Lactobacillus buchneri NRRL B-30929] gi|329128762|gb|AEB73315.1| Ribonuclease H [Lactobacillus buchneri NRRL B-30929] Length = 257 Score = 277 bits (709), Expect = 7e-73, Method: Composition-based stats. Identities = 86/199 (43%), Positives = 126/199 (63%), Gaps = 3/199 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F+ E + + VAG+DEVGRG LAGPVV AA+IL + +NDSK+++ +R E Sbjct: 59 RFKYERSFWHQGLQYVAGVDEVGRGPLAGPVVAAAVILPHDFDLVSVNDSKQLTPTQRAE 118 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L I++ A+ + I S + ID+ NI++AT A+ AVE+L P ++D IP + Sbjct: 119 LAPLISAEALSVGIGSVDNHGIDELNIYQATRVAMKQAVESLTPQPDEIIVDAMQIP--V 176 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P + +IKGD+ S+S++AASI+AKV RD LM K+YP+Y F + GY TAKH +K Sbjct: 177 PIRQTRLIKGDAKSISVSAASIVAKVYRDHLMDEYAKQYPEYDFPHNAGYGTAKHLAALK 236 Query: 190 EKGPSCIHRLTFRPLRNLS 208 E GP+ IHR++F P++ S Sbjct: 237 ELGPTPIHRMSFAPVKKFS 255 >gi|149183639|ref|ZP_01862056.1| ribonuclease HII [Bacillus sp. SG-1] gi|148848656|gb|EDL62889.1| ribonuclease HII [Bacillus sp. SG-1] Length = 258 Score = 277 bits (709), Expect = 8e-73, Method: Composition-based stats. Identities = 91/197 (46%), Positives = 124/197 (62%), Gaps = 3/197 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +R++ +AGIDEVGRG LAGPVV AA+IL + GINDSKK+S K+RE Y+ Sbjct: 63 FENELRDQGFELIAGIDEVGRGPLAGPVVAAAVILPADFCLLGINDSKKLSEKQREAFYQ 122 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 IT AI S S Q ID+ NI++A+ A+ A+ L V P LID + P Sbjct: 123 YITEEAIAWSTGIISPQEIDELNIYQASKKAMVTALNTLNVKPDHLLIDAMEL--GSPYP 180 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SIAAASI+AKVTRDR+M + Y YG + ++GY T +H + + E G Sbjct: 181 EMSLIKGDARSISIAAASIVAKVTRDRMMEEYSQVYSGYGLEKNMGYGTKEHLEGLNEFG 240 Query: 193 PSCIHRLTFRPLRNLSV 209 PS IHR +F P++ L + Sbjct: 241 PSPIHRKSFAPVKELML 257 >gi|296504332|ref|YP_003666032.1| ribonuclease HII [Bacillus thuringiensis BMB171] gi|296325384|gb|ADH08312.1| ribonuclease HII [Bacillus thuringiensis BMB171] Length = 257 Score = 277 bits (709), Expect = 8e-73, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 128/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID NI++AT A+ AV NL P+ LID +P P Sbjct: 122 EIKVQAIAIGVGIVSPQIIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP+YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEAIEVHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLDEHRNSFAPIKDM 254 >gi|260574050|ref|ZP_05842055.1| Ribonuclease H [Rhodobacter sp. SW2] gi|259023516|gb|EEW26807.1| Ribonuclease H [Rhodobacter sp. SW2] Length = 213 Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats. Identities = 90/201 (44%), Positives = 124/201 (61%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 P P F E + VAG+DEVGRG LAGPV AA+ L P +IP G+NDSKK+S Sbjct: 4 PPFPDFSFETAALARGARVVAGVDEVGRGPLAGPVTAAAVRLFPGSIPLGLNDSKKLSAA 63 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 +RE L+ + A +SI+ A+ ID+ NI +A+ A+ A+ L ALIDG +P Sbjct: 64 RREALFHALMEQAQVSIAHATVAEIDELNILRASHLAMQRALAGLPEPCDHALIDGNLLP 123 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 L C A A++KGD SLSIAAASIIAKVTRD +M +++P YG++++ GYPT H Sbjct: 124 RGLSCAAQAIVKGDGRSLSIAAASIIAKVTRDAIMVDLAQQHPGYGWEANAGYPTKAHLA 183 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 + G + HR +F+P+ N+ Sbjct: 184 ALLNLGVTPWHRRSFKPVHNI 204 >gi|294675759|ref|YP_003576374.1| ribonuclease HII [Rhodobacter capsulatus SB 1003] gi|294474579|gb|ADE83967.1| ribonuclease HII [Rhodobacter capsulatus SB 1003] Length = 211 Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats. Identities = 86/202 (42%), Positives = 128/202 (63%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + P E + +AG+DEVGRG L GPV AA++LD + +P G+NDSKK+S Sbjct: 1 MSTAPDTRFEQAALARGFTRIAGVDEVGRGPLCGPVTAAAVVLDLSCLPEGLNDSKKLSA 60 Query: 66 KKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 K+R L +IT++A +S++ AS ID NI +A+ A+ A+E L+ P LIDG + Sbjct: 61 KRRAALVAQITATADVSVAHASVAEIDALNILQASHLAMIRAIEGLKTPPDHVLIDGNRL 120 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P+ L A A++KGD+ S+SIAAASI+AK RD LM ++YP YG++ + GYPT H Sbjct: 121 PKALTISAEAIVKGDARSVSIAAASILAKEIRDALMVDLAQQYPGYGWERNAGYPTRDHL 180 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 Q + + G + +HR +F+P+ N+ Sbjct: 181 QALLDLGVTPVHRRSFKPVHNI 202 >gi|83950881|ref|ZP_00959614.1| ribonuclease HII [Roseovarius nubinhibens ISM] gi|83838780|gb|EAP78076.1| ribonuclease HII [Roseovarius nubinhibens ISM] Length = 209 Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats. Identities = 90/198 (45%), Positives = 133/198 (67%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + E + VAG+DEVGRG LAGPV AA++LDP IP G+NDSK ++ K+RE Sbjct: 3 PDYRFEDEAIAQGFGVVAGVDEVGRGPLAGPVTAAAVVLDPARIPAGLNDSKALTPKRRE 62 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+++I + A +SI+ AS + ID+ NI +A+ A+ AV L V AL+DG +P DL Sbjct: 63 ALFDEIAAVAHVSIAHASVEEIDEINILRASHLAMERAVAGLPVAAGFALVDGNLLPRDL 122 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A AVIKGD++SLSI+AASI+AK+ RDR+M + YP YG++++ GYP+ H++ ++ Sbjct: 123 RIPARAVIKGDALSLSISAASIMAKICRDRIMWDLAQHYPGYGWETNAGYPSKSHKEALR 182 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + HR +F+P+ N+ Sbjct: 183 NLGVTPHHRRSFKPVHNI 200 >gi|119384834|ref|YP_915890.1| ribonuclease H [Paracoccus denitrificans PD1222] gi|189043634|sp|A1B3V0|RNH2_PARDP RecName: Full=Ribonuclease HII; Short=RNase HII gi|119374601|gb|ABL70194.1| RNase HII [Paracoccus denitrificans PD1222] Length = 210 Score = 276 bits (706), Expect = 1e-72, Method: Composition-based stats. Identities = 84/198 (42%), Positives = 123/198 (62%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + LE VAG+DEVGRG LAGPV AA+ILD IP G+NDSKK++ K+RE Sbjct: 4 PDYSLEEAALRSGARFVAGVDEVGRGPLAGPVTAAAVILDAGCIPEGLNDSKKLTAKRRE 63 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L E + + ++ AS + ID+ NI +A+ A+ A+ L+ P L+DG +P DL Sbjct: 64 ALAELVMARCDWAVGHASVEEIDRLNILRASHLAMCRAIAGLRQRPCLVLVDGNMLPRDL 123 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 AV+ GD+ LSIAAASI+AK+ RDR+M +++P YG++++ GYPT H+Q + Sbjct: 124 DLPGQAVVGGDARCLSIAAASILAKLLRDRIMVDLAQQHPGYGWEANAGYPTPAHRQALL 183 Query: 190 EKGPSCIHRLTFRPLRNL 207 + G + HR +F P+ + Sbjct: 184 DLGVTPYHRRSFAPVHKI 201 >gi|295706298|ref|YP_003599373.1| ribonuclease HII [Bacillus megaterium DSM 319] gi|294803957|gb|ADF41023.1| ribonuclease HII [Bacillus megaterium DSM 319] Length = 255 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 90/195 (46%), Positives = 126/195 (64%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + +AG+DEVGRG LAGPVV AA+IL P+ G+ DSKK+S KREE Y Sbjct: 60 AYENELYNQGATYIAGVDEVGRGPLAGPVVAAAVILPPDFFLPGLTDSKKLSEAKREEFY 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E+I SA+ I I + ID NI++AT A+ A+E L V P LID +P +P Sbjct: 120 EEICKSAVAIGIGIIDAEVIDSINIYEATKKAMTEAIELLAVQPDELLIDAMKLP--VPI 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAA+S+IAKVTRDR+M+ ++YP YGF+ H+GY T +H + I++ Sbjct: 178 SQQSIIKGDATSISIAASSVIAKVTRDRMMKELGERYPAYGFEKHMGYGTKQHLEAIQQY 237 Query: 192 GPSCIHRLTFRPLRN 206 G HR +F P++N Sbjct: 238 GILPEHRRSFAPIKN 252 >gi|254485800|ref|ZP_05099005.1| ribonuclease HII [Roseobacter sp. GAI101] gi|214042669|gb|EEB83307.1| ribonuclease HII [Roseobacter sp. GAI101] Length = 205 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 84/198 (42%), Positives = 130/198 (65%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P FE E + VAG+DEVGRG LAGPV AA++LDP IP G+NDSKK++ + RE Sbjct: 3 PDFEFERDAYARGFARVAGVDEVGRGPLAGPVTAAAVVLDPARIPEGLNDSKKLTKRARE 62 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY++I + A +SI+ AS + I++ NI +A+ A+ A++ L+ ALIDG +P DL Sbjct: 63 RLYDEIMAVADVSIAHASVEEIEELNILRASHLAMVRALDGLRTPADFALIDGNMVPRDL 122 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++ VIKGD+ S SI+AASI+AK+ RD +M +++P YG+++++GY + H + ++ Sbjct: 123 AIKSQTVIKGDARSQSISAASIMAKICRDCVMLSLAQQHPGYGWETNMGYGSKSHIEALQ 182 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + HR F+P+ + Sbjct: 183 NLGVTPHHRRLFKPVHKM 200 >gi|163745410|ref|ZP_02152770.1| ribonuclease HII [Oceanibulbus indolifex HEL-45] gi|161382228|gb|EDQ06637.1| ribonuclease HII [Oceanibulbus indolifex HEL-45] Length = 218 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 83/201 (41%), Positives = 127/201 (63%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 P P FE E + +AG+DEVGRG LAGPV AA++ IP G+NDSKK++ + Sbjct: 9 PMIPDFEFERGAITRGFRTIAGVDEVGRGPLAGPVTAAAVVFTEGQIPEGLNDSKKLTAR 68 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE LY++I S A++ ++ A+ + I++HNI +A+ A+ A+ L ALIDG +P Sbjct: 69 ARERLYDEIMSMAVVCVAHATVEEIEEHNILRASHLAMTRALAGLACAADYALIDGNMLP 128 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 DL A V+KGD+ LSI+AASI+AK RDRLM +++P YG+++++GY + H Sbjct: 129 RDLSLPAQPVVKGDARCLSISAASIVAKTVRDRLMVDLAQQHPGYGWETNMGYGSKSHMA 188 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 +++ G + HR F+P+ N+ Sbjct: 189 ALRDLGVTPHHRRLFKPIHNI 209 >gi|260432295|ref|ZP_05786266.1| ribonuclease HII [Silicibacter lacuscaerulensis ITI-1157] gi|260416123|gb|EEX09382.1| ribonuclease HII [Silicibacter lacuscaerulensis ITI-1157] Length = 229 Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 87/198 (43%), Positives = 130/198 (65%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F LE + + VAG+DEVGRG LAGPVV AA+IL+P +IP G+NDSKK++ ++R Sbjct: 23 PDFNLEREMMAQGHARVAGVDEVGRGPLAGPVVAAAVILNPQDIPKGLNDSKKLTARRRL 82 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L + + + SI+ AS ID NI A+ A+ AV L+ P LIDG IP+ L Sbjct: 83 ALDADLRARSEFSIAEASVAEIDDLNILYASHLAMVRAVAALKPAPDYVLIDGNLIPKGL 142 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A AV++GD+ S+SIAAASI+AK RD+LM +++P YG++++ GYP+ +H++ ++ Sbjct: 143 TVPARAVVRGDAKSVSIAAASILAKNWRDQLMVDLAQQHPGYGWETNAGYPSKQHREALQ 202 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + HR +F+P+ N+ Sbjct: 203 NLGVTPHHRRSFKPVHNI 220 >gi|332076292|gb|EGI86758.1| ribonuclease HII [Streptococcus pneumoniae GA41301] Length = 259 Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 126/199 (63%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQVVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|301794258|emb|CBW36679.1| ribonuclease HII [Streptococcus pneumoniae INV104] gi|332203012|gb|EGJ17080.1| ribonuclease HII [Streptococcus pneumoniae GA47901] Length = 259 Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 126/199 (63%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQVVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|149013109|ref|ZP_01833955.1| ribonuclease HII [Streptococcus pneumoniae SP19-BS75] gi|147763054|gb|EDK69997.1| ribonuclease HII [Streptococcus pneumoniae SP19-BS75] Length = 259 Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 126/199 (63%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|326693008|ref|ZP_08230013.1| ribonuclease HII [Leuconostoc argentinum KCTC 3773] Length = 258 Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 87/200 (43%), Positives = 121/200 (60%), Gaps = 3/200 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F EA + + VAG+DEVGRG LAGPVV AA+IL + + DSK++S K R Sbjct: 56 KTRFTFEAQQWAQGLSHVAGVDEVGRGPLAGPVVAAAVILPHDFAELDVIDSKQLSEKMR 115 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E+L+++I + A+ I I ID NI++A A+ AV L P LID ++ Sbjct: 116 EQLFDRIIAQALSIGIGVVDATVIDDINIYEAARLAMTQAVAELAPEPDYLLIDAMTLQT 175 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D+P ++IKGD+ S SIAAASIIAKVTRDR+M ++YP YGF H GY T H Sbjct: 176 DIP--QLSLIKGDARSNSIAAASIIAKVTRDRMMADYDRQYPGYGFAQHAGYGTKAHLAA 233 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 + E G + IHR +F P++++ Sbjct: 234 LAELGVTPIHRRSFAPVKSV 253 >gi|168486442|ref|ZP_02710950.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC1087-00] gi|168577174|ref|ZP_02722989.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae MLV-016] gi|182684110|ref|YP_001835857.1| ribonuclease HII [Streptococcus pneumoniae CGSP14] gi|194396938|ref|YP_002037768.1| ribonuclease HII [Streptococcus pneumoniae G54] gi|237650103|ref|ZP_04524355.1| ribonuclease HII [Streptococcus pneumoniae CCRI 1974] gi|237822305|ref|ZP_04598150.1| ribonuclease HII [Streptococcus pneumoniae CCRI 1974M2] gi|303255770|ref|ZP_07341812.1| ribonuclease HII [Streptococcus pneumoniae BS455] gi|303260563|ref|ZP_07346529.1| ribonuclease HII [Streptococcus pneumoniae SP-BS293] gi|303262697|ref|ZP_07348636.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS292] gi|303265232|ref|ZP_07351143.1| ribonuclease HII [Streptococcus pneumoniae BS397] gi|303266995|ref|ZP_07352869.1| ribonuclease HII [Streptococcus pneumoniae BS457] gi|303269263|ref|ZP_07355038.1| ribonuclease HII [Streptococcus pneumoniae BS458] gi|238690822|sp|B5E4Q2|RNH2_STRP4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|238691160|sp|B2IPW8|RNH2_STRPS RecName: Full=Ribonuclease HII; Short=RNase HII gi|182629444|gb|ACB90392.1| ribonuclease HII [Streptococcus pneumoniae CGSP14] gi|183570488|gb|EDT91016.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC1087-00] gi|183577232|gb|EDT97760.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae MLV-016] gi|194356605|gb|ACF55053.1| ribonuclease HII [Streptococcus pneumoniae G54] gi|301801974|emb|CBW34702.1| ribonuclease HII [Streptococcus pneumoniae INV200] gi|302597282|gb|EFL64386.1| ribonuclease HII [Streptococcus pneumoniae BS455] gi|302636129|gb|EFL66625.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS292] gi|302638276|gb|EFL68745.1| ribonuclease HII [Streptococcus pneumoniae SP-BS293] gi|302641220|gb|EFL71592.1| ribonuclease HII [Streptococcus pneumoniae BS458] gi|302643475|gb|EFL73748.1| ribonuclease HII [Streptococcus pneumoniae BS457] gi|302645203|gb|EFL75439.1| ribonuclease HII [Streptococcus pneumoniae BS397] gi|332200480|gb|EGJ14552.1| ribonuclease HII [Streptococcus pneumoniae GA41317] Length = 259 Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 126/199 (63%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|149006184|ref|ZP_01829896.1| ribonuclease HII [Streptococcus pneumoniae SP18-BS74] gi|225861097|ref|YP_002742606.1| ribonuclease HII [Streptococcus pneumoniae Taiwan19F-14] gi|298230996|ref|ZP_06964677.1| ribonuclease HII [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255436|ref|ZP_06979022.1| ribonuclease HII [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502841|ref|YP_003724781.1| ribonuclease H [Streptococcus pneumoniae TCH8431/19A] gi|307127247|ref|YP_003879278.1| ribonuclease HII [Streptococcus pneumoniae 670-6B] gi|254807994|sp|C1CRN4|RNH2_STRZT RecName: Full=Ribonuclease HII; Short=RNase HII gi|147761961|gb|EDK68923.1| ribonuclease HII [Streptococcus pneumoniae SP18-BS74] gi|225727970|gb|ACO23821.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae Taiwan19F-14] gi|298238436|gb|ADI69567.1| ribonuclease H [Streptococcus pneumoniae TCH8431/19A] gi|306484309|gb|ADM91178.1| ribonuclease HII [Streptococcus pneumoniae 670-6B] gi|327389302|gb|EGE87647.1| ribonuclease HII [Streptococcus pneumoniae GA04375] Length = 259 Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 126/199 (63%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|332075090|gb|EGI85561.1| ribonuclease HII [Streptococcus pneumoniae GA17545] Length = 260 Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 126/199 (63%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|293570274|ref|ZP_06681343.1| ribonuclease HII [Enterococcus faecium E980] gi|291609681|gb|EFF38942.1| ribonuclease HII [Enterococcus faecium E980] Length = 255 Score = 275 bits (704), Expect = 2e-72, Method: Composition-based stats. Identities = 93/196 (47%), Positives = 125/196 (63%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + +AGIDEVGRG LAGPVV AA+IL N I G+NDSK++S KKRE L Sbjct: 59 FCFEKQGYAQGHQWIAGIDEVGRGPLAGPVVAAAVILPKNEIILGLNDSKQLSEKKRELL 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++I A+ I I Q ID+ NI++A+ A+ AVENL + P LID ++ DLP Sbjct: 119 SQQIQEKALAIGIGIIDQQAIDEVNIYEASKLAMIQAVENLSIAPSYLLIDAMTL--DLP 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 Q +IKGD+ S+SIAAASIIAKV RD+LM+ YP YGF + GY T +H + ++ Sbjct: 177 IQQEKIIKGDARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGYGTKEHLEGLER 236 Query: 191 KGPSCIHRLTFRPLRN 206 +G + IHR +F P++ Sbjct: 237 QGITPIHRKSFAPVKK 252 >gi|126734213|ref|ZP_01749960.1| ribonuclease HII [Roseobacter sp. CCS2] gi|126717079|gb|EBA13943.1| ribonuclease HII [Roseobacter sp. CCS2] Length = 207 Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats. Identities = 96/199 (48%), Positives = 138/199 (69%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P F E+ ++ VAG+DEVGRG LAGPVV AA+IL+P NIP G+NDSKK++ K+R Sbjct: 3 KPDFSFESAAHQRGFIHVAGVDEVGRGPLAGPVVAAAVILNPANIPDGLNDSKKLTAKRR 62 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + LY+++ + A +SI+ A+ ID+HNI +A+ A+ AV L VI ALIDG IP D Sbjct: 63 DALYDELLAVADVSIAEATVAEIDEHNILRASHIAMVRAVAGLSVIAAHALIDGNMIPRD 122 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L + +IKGD SLSIAAASI+AKV RDR M +++P YG++ + GYPTA+H+ + Sbjct: 123 LAISSQTIIKGDGRSLSIAAASIMAKVWRDRHMVALAQQHPHYGWEKNAGYPTAQHKLGL 182 Query: 189 KEKGPSCIHRLTFRPLRNL 207 ++ G + HR +F+P+ N+ Sbjct: 183 QQFGVTEHHRRSFKPIHNI 201 >gi|257898823|ref|ZP_05678476.1| ribonuclease HII [Enterococcus faecium Com15] gi|257836735|gb|EEV61809.1| ribonuclease HII [Enterococcus faecium Com15] Length = 255 Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats. Identities = 93/196 (47%), Positives = 125/196 (63%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + +AGIDEVGRG LAGPVV AA+IL N I G+NDSK++S KKRE L Sbjct: 59 FCFEKQGYAQGHQWIAGIDEVGRGPLAGPVVAAAVILPKNEIILGLNDSKQLSEKKRELL 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++I A+ I I Q ID+ NI++A+ A+ AVENL + P LID ++ DLP Sbjct: 119 SQQIQEKALAIGIGIIDQQAIDEVNIYEASKLAMIQAVENLSIAPSYLLIDAMTL--DLP 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 Q +IKGD+ S+SIAAASIIAKV RD+LM+ YP YGF + GY T +H + ++ Sbjct: 177 IQQEKIIKGDARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGYGTKEHLEGLER 236 Query: 191 KGPSCIHRLTFRPLRN 206 +G + IHR +F P++ Sbjct: 237 QGITPIHRKSFAPVKK 252 >gi|86136899|ref|ZP_01055477.1| ribonuclease HII [Roseobacter sp. MED193] gi|85826223|gb|EAQ46420.1| ribonuclease HII [Roseobacter sp. MED193] Length = 226 Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats. Identities = 93/204 (45%), Positives = 130/204 (63%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 + E+P LE EK VAG+DEVGRG LAGPV AA++LD ++P G+NDSKK+ Sbjct: 19 DKTMEQPDNSLEIAAHEKGYLRVAGVDEVGRGPLAGPVTAAAVVLDMADLPEGLNDSKKL 78 Query: 64 SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 S KKR L ++I + A +SI+ AS + ID NI +A+ A+ AV L P LIDG Sbjct: 79 SAKKRVVLAKEIFARAQVSIAEASVEEIDSINILRASHLAMERAVAALDPPPDYLLIDGN 138 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 IP DL A AV+KGD S+SIAAASI+AK RD LM +++P YG++ + GYP+ + Sbjct: 139 LIPRDLTIDAQAVVKGDGKSVSIAAASIVAKEARDNLMVDLAQQFPRYGWEKNAGYPSKQ 198 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H++ + E G + HR +F+P+ + Sbjct: 199 HREALVELGVTPHHRRSFKPVHKI 222 >gi|163761011|ref|ZP_02168089.1| putative ribonuclease HII [Hoeflea phototrophica DFL-43] gi|162281792|gb|EDQ32085.1| putative ribonuclease HII [Hoeflea phototrophica DFL-43] Length = 221 Score = 275 bits (703), Expect = 4e-72, Method: Composition-based stats. Identities = 109/204 (53%), Positives = 138/204 (67%) Query: 2 FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61 P P E + + PVAG+DE GRG LAGPVV AA+ILDP IP G+NDSK Sbjct: 16 LFPDYPASPDDRFERHFSKDGLLPVAGLDEAGRGPLAGPVVAAAVILDPARIPEGLNDSK 75 Query: 62 KISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 +S KKRE L+++I ++A++SI+SAS + ID +I KA+L A+ A+ L V ALID Sbjct: 76 ALSRKKRETLFDQIIATAMVSIASASPREIDVTDIRKASLTAMRRALIALPVRAGYALID 135 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 GR IP L C A++KGD+ SLSIAAASI+AKV RDR+M A YP YGFDSH GY + Sbjct: 136 GRDIPPGLTCPGRALVKGDARSLSIAAASIVAKVMRDRMMMRAAILYPVYGFDSHKGYGS 195 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLR 205 AKH I+E GP +HR++FRPLR Sbjct: 196 AKHLAAIREHGPCPLHRMSFRPLR 219 >gi|163739877|ref|ZP_02147284.1| Ribonuclease H [Phaeobacter gallaeciensis BS107] gi|161386911|gb|EDQ11273.1| Ribonuclease H [Phaeobacter gallaeciensis BS107] Length = 205 Score = 275 bits (703), Expect = 4e-72, Method: Composition-based stats. Identities = 91/198 (45%), Positives = 128/198 (64%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + LEA + +AG+DEVGRG LAGPV AA+ILDP NIP G+NDSKK+S K+RE Sbjct: 4 PDYTLEAAAHGRGQIRIAGVDEVGRGPLAGPVTAAAVILDPENIPEGLNDSKKLSAKRRE 63 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 + I + A +SI+ AS + ID NI +A+ A+ AV L P LIDG IP+ L Sbjct: 64 AVEASIFAQAEVSIAHASVEEIDSLNILRASHLAMERAVAALDPAPDYLLIDGNLIPKGL 123 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A VIKGD+ S+SIAAASI+AK RDR+M +++P YG++ + GYP+ +H++ + Sbjct: 124 LQPAEFVIKGDAKSVSIAAASIVAKQARDRIMVDLAQQFPGYGWEKNAGYPSKQHREALV 183 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + HR +F+P+ + Sbjct: 184 SLGVTPHHRRSFKPVHKM 201 >gi|169833197|ref|YP_001694596.1| ribonuclease HII [Streptococcus pneumoniae Hungary19A-6] gi|238688296|sp|B1IBW1|RNH2_STRPI RecName: Full=Ribonuclease HII; Short=RNase HII gi|168995699|gb|ACA36311.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae Hungary19A-6] Length = 259 Score = 274 bits (702), Expect = 4e-72, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 126/199 (63%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGATPIHRTSFEPVKSLVL 254 >gi|254472008|ref|ZP_05085409.1| ribonuclease HII [Pseudovibrio sp. JE062] gi|211959210|gb|EEA94409.1| ribonuclease HII [Pseudovibrio sp. JE062] Length = 217 Score = 274 bits (702), Expect = 4e-72, Method: Composition-based stats. Identities = 94/207 (45%), Positives = 130/207 (62%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 +F + P+ P E V + AGIDE GRG AGPVVVAA L+ +N+P G+NDS Sbjct: 8 LFDIAFPDAPDLRFERSVEQDLQGRFAGIDEAGRGPWAGPVVVAAASLNYDNLPEGLNDS 67 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 KK++ KREEL+E+I A +S+ S Q ID+ NI +ATL + +L V + I Sbjct: 68 KKLTEAKREELFEQILEVADVSVCVQSAQTIDRLNIREATLQGMRTCARSLSVPVKRFFI 127 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG+ +P LP + A+IKGD L+I+AASI+AKVTRDRLM + +P+YGF H GY Sbjct: 128 DGKDVPHHLPQEGQAMIKGDGRCLAISAASIVAKVTRDRLMVKMDRYFPEYGFAKHKGYG 187 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNL 207 T +HQ+ + G + +HR +FRP+R L Sbjct: 188 TKQHQEALAAHGVTPLHRCSFRPIREL 214 >gi|227551191|ref|ZP_03981240.1| ribonuclease H [Enterococcus faecium TX1330] gi|257887692|ref|ZP_05667345.1| ribonuclease HII [Enterococcus faecium 1,141,733] gi|257896186|ref|ZP_05675839.1| ribonuclease HII [Enterococcus faecium Com12] gi|293377187|ref|ZP_06623395.1| ribonuclease HII [Enterococcus faecium PC4.1] gi|227179659|gb|EEI60631.1| ribonuclease H [Enterococcus faecium TX1330] gi|257823746|gb|EEV50678.1| ribonuclease HII [Enterococcus faecium 1,141,733] gi|257832751|gb|EEV59172.1| ribonuclease HII [Enterococcus faecium Com12] gi|292644207|gb|EFF62309.1| ribonuclease HII [Enterococcus faecium PC4.1] Length = 255 Score = 274 bits (702), Expect = 5e-72, Method: Composition-based stats. Identities = 92/196 (46%), Positives = 124/196 (63%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + +AGIDEVGRG LAGPVV AA+IL N I G+NDSK++S KKRE L Sbjct: 59 FCFEKQGYAQGHQWIAGIDEVGRGPLAGPVVAAAVILPKNEIILGLNDSKQLSEKKRELL 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++I A+ I I Q ID+ NI++A+ A+ AVENL + P LID ++ DL Sbjct: 119 SQQIQEKALAIGIGIIDQQTIDEVNIYEASKLAMIQAVENLSIAPSYLLIDAMTL--DLS 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 Q +IKGD+ S+SIAAASIIAKV RD+LM+ YP YGF + GY T +H + ++ Sbjct: 177 IQQEKIIKGDARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGYGTKEHLEGLER 236 Query: 191 KGPSCIHRLTFRPLRN 206 +G + IHR +F P++ Sbjct: 237 QGITPIHRKSFAPVKK 252 >gi|257878020|ref|ZP_05657673.1| ribonuclease HII [Enterococcus faecium 1,230,933] gi|257881194|ref|ZP_05660847.1| ribonuclease HII [Enterococcus faecium 1,231,502] gi|257889781|ref|ZP_05669434.1| ribonuclease HII [Enterococcus faecium 1,231,410] gi|257892282|ref|ZP_05671935.1| ribonuclease HII [Enterococcus faecium 1,231,408] gi|258616491|ref|ZP_05714261.1| ribonuclease HII [Enterococcus faecium DO] gi|260559070|ref|ZP_05831256.1| ribonuclease HII [Enterococcus faecium C68] gi|261207604|ref|ZP_05922289.1| ribonuclease HII [Enterococcus faecium TC 6] gi|289565116|ref|ZP_06445569.1| ribonuclease HII [Enterococcus faecium D344SRF] gi|293556764|ref|ZP_06675327.1| ribonuclease HII [Enterococcus faecium E1039] gi|293563422|ref|ZP_06677871.1| ribonuclease HII [Enterococcus faecium E1162] gi|293568165|ref|ZP_06679501.1| ribonuclease HII (RNase HII) [Enterococcus faecium E1071] gi|294614822|ref|ZP_06694717.1| ribonuclease HII [Enterococcus faecium E1636] gi|294617501|ref|ZP_06697132.1| ribonuclease HII [Enterococcus faecium E1679] gi|294622303|ref|ZP_06701346.1| ribonuclease HII [Enterococcus faecium U0317] gi|314938032|ref|ZP_07845342.1| ribonuclease HII [Enterococcus faecium TX0133a04] gi|314941982|ref|ZP_07848843.1| ribonuclease HII [Enterococcus faecium TX0133C] gi|314948765|ref|ZP_07852137.1| ribonuclease HII [Enterococcus faecium TX0082] gi|314951783|ref|ZP_07854822.1| ribonuclease HII [Enterococcus faecium TX0133A] gi|314991810|ref|ZP_07857268.1| ribonuclease HII [Enterococcus faecium TX0133B] gi|314995851|ref|ZP_07860938.1| ribonuclease HII [Enterococcus faecium TX0133a01] gi|257812248|gb|EEV41006.1| ribonuclease HII [Enterococcus faecium 1,230,933] gi|257816852|gb|EEV44180.1| ribonuclease HII [Enterococcus faecium 1,231,502] gi|257826141|gb|EEV52767.1| ribonuclease HII [Enterococcus faecium 1,231,410] gi|257828661|gb|EEV55268.1| ribonuclease HII [Enterococcus faecium 1,231,408] gi|260074827|gb|EEW63143.1| ribonuclease HII [Enterococcus faecium C68] gi|260077987|gb|EEW65693.1| ribonuclease HII [Enterococcus faecium TC 6] gi|289163123|gb|EFD10970.1| ribonuclease HII [Enterococcus faecium D344SRF] gi|291589155|gb|EFF20967.1| ribonuclease HII (RNase HII) [Enterococcus faecium E1071] gi|291592284|gb|EFF23898.1| ribonuclease HII [Enterococcus faecium E1636] gi|291596241|gb|EFF27503.1| ribonuclease HII [Enterococcus faecium E1679] gi|291598195|gb|EFF29293.1| ribonuclease HII [Enterococcus faecium U0317] gi|291601096|gb|EFF31385.1| ribonuclease HII [Enterococcus faecium E1039] gi|291604683|gb|EFF34168.1| ribonuclease HII [Enterococcus faecium E1162] gi|313589955|gb|EFR68800.1| ribonuclease HII [Enterococcus faecium TX0133a01] gi|313593621|gb|EFR72466.1| ribonuclease HII [Enterococcus faecium TX0133B] gi|313596062|gb|EFR74907.1| ribonuclease HII [Enterococcus faecium TX0133A] gi|313599234|gb|EFR78079.1| ribonuclease HII [Enterococcus faecium TX0133C] gi|313642607|gb|EFS07187.1| ribonuclease HII [Enterococcus faecium TX0133a04] gi|313644831|gb|EFS09411.1| ribonuclease HII [Enterococcus faecium TX0082] Length = 255 Score = 274 bits (702), Expect = 5e-72, Method: Composition-based stats. Identities = 92/196 (46%), Positives = 125/196 (63%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + +AGIDEVGRG LAGPVV AA+IL N I G+NDSK++S KKRE L Sbjct: 59 FCFEKQGYAQGHQWIAGIDEVGRGPLAGPVVAAAVILPKNEIILGLNDSKQLSEKKRELL 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+++ A+ I I Q ID NI++A+ A+ AVE L ++P LID ++ DLP Sbjct: 119 YQQVQEKALAIGIGIVDQQTIDDVNIYEASKLAMIQAVEKLSIVPSYLLIDAMTL--DLP 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 Q +IKGD+ S+SIAAASIIAKV RD+LM+ YP YGF + GY T +H + ++ Sbjct: 177 IQQEKIIKGDARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGYGTKEHLEGLER 236 Query: 191 KGPSCIHRLTFRPLRN 206 +G + IHR +F P++ Sbjct: 237 QGITPIHRKSFAPVKK 252 >gi|189485020|ref|YP_001955961.1| ribonuclease HII [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|254808005|sp|B1GZ18|RNH2_UNCTG RecName: Full=Ribonuclease HII; Short=RNase HII gi|170286979|dbj|BAG13500.1| ribonuclease HII [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 210 Score = 274 bits (702), Expect = 5e-72, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 120/197 (60%), Gaps = 1/197 (0%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F + K +PVAGIDE GRG LAGPVV A +IL ++ +NDSK++S KKRE L Sbjct: 6 FSFDRNFYNKGFYPVAGIDEAGRGPLAGPVVAAVVILPKDSAIPYLNDSKQLSEKKREIL 65 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +E I +A+ ++ +++ ID+ NI +AT A+ AV L+ P LIDG L Sbjct: 66 FEIIKETALDYAVELVNNEIIDEINILQATFLAMSRAVLKLKTQPDLYLIDGNRKVHGLS 125 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++ GD+ S IAAASI+AKV+RD++M K+YP Y F+ H GY T KH + +K+ Sbjct: 126 FNQETIVGGDAKSACIAAASILAKVSRDKMMLEYAKQYPVYEFEKHKGYGTKKHIEALKK 185 Query: 191 KGPSCIHRLTFRPLRNL 207 G IHRLTF P+ ++ Sbjct: 186 HGICPIHRLTFSPVNDI 202 >gi|168492508|ref|ZP_02716651.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC0288-04] gi|168493082|ref|ZP_02717225.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC3059-06] gi|221231870|ref|YP_002511022.1| ribonuclease HII [Streptococcus pneumoniae ATCC 700669] gi|225854632|ref|YP_002736144.1| ribonuclease HII [Streptococcus pneumoniae JJA] gi|254807990|sp|B8ZQ37|RNH2_STRPJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807992|sp|C1CEC3|RNH2_STRZJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|183573321|gb|EDT93849.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC0288-04] gi|183576643|gb|EDT97171.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC3059-06] gi|220674330|emb|CAR68876.1| ribonuclease HII [Streptococcus pneumoniae ATCC 700669] gi|225722957|gb|ACO18810.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae JJA] Length = 259 Score = 274 bits (702), Expect = 5e-72, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 125/199 (62%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + + GIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIVGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|15903088|ref|NP_358638.1| ribonuclease HII [Streptococcus pneumoniae R6] gi|116515974|ref|YP_816494.1| ribonuclease HII [Streptococcus pneumoniae D39] gi|148985764|ref|ZP_01818892.1| ribonuclease HII [Streptococcus pneumoniae SP3-BS71] gi|32171635|sp|Q8DPR3|RNH2_STRR6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|122278620|sp|Q04KF4|RNH2_STRP2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|15458664|gb|AAK99848.1| Ribonuclease H [Streptococcus pneumoniae R6] gi|116076550|gb|ABJ54270.1| ribonuclease HII [Streptococcus pneumoniae D39] gi|147922068|gb|EDK73191.1| ribonuclease HII [Streptococcus pneumoniae SP3-BS71] gi|301800096|emb|CBW32697.1| ribonuclease HII [Streptococcus pneumoniae OXC141] Length = 259 Score = 274 bits (702), Expect = 5e-72, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 125/199 (62%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + + GIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIVGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|85705987|ref|ZP_01037083.1| ribonuclease HII [Roseovarius sp. 217] gi|85669575|gb|EAQ24440.1| ribonuclease HII [Roseovarius sp. 217] Length = 206 Score = 274 bits (702), Expect = 5e-72, Method: Composition-based stats. Identities = 89/198 (44%), Positives = 129/198 (65%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + +AG+DEVGRG LAGPV AA+ILDP NIP G+NDSKK+S +R Sbjct: 4 PDFSHEHTAHSQGYRRIAGVDEVGRGPLAGPVTAAAVILDPGNIPEGLNDSKKLSAARRA 63 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L I ++A +S++ AS ID+ NI +A+ A+ A+ L + P ALIDG IP L Sbjct: 64 ALCGVILATAHVSVAHASVDEIDRLNILRASHLAMERAIAGLGLAPDLALIDGNLIPRGL 123 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A A+++GD+ISLSIAAASI+AK+ RD++M +++P YG++ + GYP+ H+Q + Sbjct: 124 TLPARAIVRGDAISLSIAAASIVAKIRRDQIMWDLAQQFPGYGWERNAGYPSKSHKQALL 183 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + HR +F+P+ N+ Sbjct: 184 NLGVTPHHRRSFKPVHNI 201 >gi|159184435|ref|NP_353745.2| ribonuclease HII [Agrobacterium tumefaciens str. C58] gi|39932435|sp|Q8UHG2|RNH2_AGRT5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|159139748|gb|AAK86530.2| ribonuclease HII [Agrobacterium tumefaciens str. C58] Length = 217 Score = 274 bits (702), Expect = 5e-72, Method: Composition-based stats. Identities = 105/197 (53%), Positives = 138/197 (70%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E ++K WPVAG DE GRG LAGPVV AA+ILDP+NIP G++DSKK++ +KRE Sbjct: 20 PDFAFELEAKKKGFWPVAGTDEAGRGPLAGPVVAAAVILDPDNIPKGMDDSKKLTRQKRE 79 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ +I ++I+S++S+ ID NI +A+LDA+ AV L++ P L DGR P + Sbjct: 80 SLFVQIMETSIVSVASSGPGLIDSVNILRASLDAMRRAVLGLEIPPALVLADGRDRPPGI 139 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 PC+A AVIKGDS SLSIAAASIIAKVTRDR+M A + YGF+ H GY T H + I+ Sbjct: 140 PCEAKAVIKGDSRSLSIAAASIIAKVTRDRMMERAGVVHTSYGFEGHAGYGTPAHLRAIE 199 Query: 190 EKGPSCIHRLTFRPLRN 206 GP +HR++FRPL+ Sbjct: 200 SHGPCALHRMSFRPLKR 216 >gi|289167905|ref|YP_003446174.1| ribonuclease HII [Streptococcus mitis B6] gi|288907472|emb|CBJ22309.1| ribonuclease HII [Streptococcus mitis B6] Length = 259 Score = 274 bits (701), Expect = 6e-72, Method: Composition-based stats. Identities = 88/197 (44%), Positives = 127/197 (64%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + VAG+DEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLVAGVDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + + A+ I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQNQALSIGIGIMDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + +++ Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEFDQQFPGYDFATNAGYGTAKHLEGLEK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P+++L Sbjct: 236 LGVTPIHRTSFEPVKSL 252 >gi|257884857|ref|ZP_05664510.1| ribonuclease HII [Enterococcus faecium 1,231,501] gi|257820695|gb|EEV47843.1| ribonuclease HII [Enterococcus faecium 1,231,501] Length = 254 Score = 274 bits (701), Expect = 7e-72, Method: Composition-based stats. Identities = 92/196 (46%), Positives = 126/196 (64%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + +AGIDEVGRG LAGPVV AA+IL N I G+NDSK++S KKRE L Sbjct: 59 FCFEKQGYAQGHQWIAGIDEVGRGPLAGPVVAAAVILPKNEIILGLNDSKQLSEKKRELL 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+++ A+ I I Q ID NI++A+ A++ AVE L ++P LID ++ DLP Sbjct: 119 YQQVQEKALAIGIGIVDQQTIDDVNIYEASKLAMFQAVEKLSIVPSYLLIDAMTL--DLP 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 Q +IKGD+ S+SIAAASIIAKV RD+LM+ YP YGF + GY T +H + ++ Sbjct: 177 IQQEKIIKGDARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGYGTKEHLEGLER 236 Query: 191 KGPSCIHRLTFRPLRN 206 +G + IHR +F P++ Sbjct: 237 QGITPIHRKSFAPVKK 252 >gi|227821031|ref|YP_002825001.1| ribonuclease HII [Sinorhizobium fredii NGR234] gi|254807983|sp|C3MHC0|RNH2_RHISN RecName: Full=Ribonuclease HII; Short=RNase HII gi|227340030|gb|ACP24248.1| ribonuclease HII [Sinorhizobium fredii NGR234] Length = 231 Score = 274 bits (701), Expect = 7e-72, Method: Composition-based stats. Identities = 103/200 (51%), Positives = 139/200 (69%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 P P F E + WPVAG DE GRG LAGPVV AA+ILDP+ +P G+NDSK ++ + Sbjct: 16 PVLPDFSFEITAKRDGFWPVAGADEAGRGPLAGPVVAAAVILDPDAVPGGLNDSKLLTAE 75 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 +RE L+ +I ++A +SI+S+S +ID +I KA+LDA+ A++ L + R ALIDGR +P Sbjct: 76 QREALFTEIMATATVSIASSSAAHIDATDILKASLDAMRRAIDGLSIAARFALIDGRDVP 135 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + LPC A A++KGDS S+SIAAASI+AKVTRDR+M A +P YGF H GY T +H+ Sbjct: 136 QGLPCHAKAIVKGDSRSVSIAAASIVAKVTRDRMMARADATFPAYGFALHAGYATVRHRS 195 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I GP +HR++FRP R Sbjct: 196 AIDSHGPCSLHRMSFRPFRE 215 >gi|254476664|ref|ZP_05090050.1| ribonuclease HII [Ruegeria sp. R11] gi|214030907|gb|EEB71742.1| ribonuclease HII [Ruegeria sp. R11] Length = 205 Score = 274 bits (701), Expect = 7e-72, Method: Composition-based stats. Identities = 94/200 (47%), Positives = 130/200 (65%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P + LEA + +AG+DEVGRG LAGPV AA+ILDP+ IP G+NDSKK+S KK Sbjct: 2 EHPDYSLEAAAIARGHRRIAGVDEVGRGPLAGPVTAAAVILDPDAIPDGLNDSKKLSAKK 61 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 RE + I SA +SI+ AS + ID NI +A+ A+ AV L P LIDG IP+ Sbjct: 62 REAVEADIFQSAEVSIAHASVEEIDSLNILRASHLAMERAVAALDPPPDYLLIDGNLIPK 121 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + A VIKGD S+SIAAASI+AK+ RDR+M +++P YG+D + GYP+ +H++ Sbjct: 122 GVQQPAEFVIKGDGKSVSIAAASIVAKLARDRIMVDLAQQFPGYGWDKNAGYPSKQHREA 181 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 + E G + HR +F+P+ + Sbjct: 182 LIEIGVTPHHRRSFKPVHKI 201 >gi|163743378|ref|ZP_02150758.1| ribonuclease HII [Phaeobacter gallaeciensis 2.10] gi|161383372|gb|EDQ07761.1| ribonuclease HII [Phaeobacter gallaeciensis 2.10] Length = 205 Score = 273 bits (700), Expect = 9e-72, Method: Composition-based stats. Identities = 90/198 (45%), Positives = 128/198 (64%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + LEA + +AG+DEVGRG LAGPV AA+ILDP NIP G+NDSKK+S K+RE Sbjct: 4 PDYTLEAAAHGRGQIRIAGVDEVGRGPLAGPVTAAAVILDPENIPEGLNDSKKLSAKRRE 63 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 + I + A ++I+ AS + ID NI +A+ A+ AV L P LIDG IP+ L Sbjct: 64 AVEASIFAQAEVAIAHASVEEIDSLNILRASHLAMERAVAALDPAPDYLLIDGNLIPKGL 123 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A VIKGD+ S+SIAAASI+AK RDR+M +++P YG++ + GYP+ +H++ + Sbjct: 124 LQPAEFVIKGDAKSVSIAAASIVAKQARDRIMVDLAQQFPGYGWEKNAGYPSKQHREALV 183 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + HR +F+P+ + Sbjct: 184 SLGVTPHHRRSFKPVHKM 201 >gi|259907556|ref|YP_002647912.1| Ribonuclease HII [Erwinia pyrifoliae Ep1/96] gi|224963178|emb|CAX54662.1| Ribonuclease HII [Erwinia pyrifoliae Ep1/96] gi|283477396|emb|CAY73312.1| rnhB [Erwinia pyrifoliae DSM 12163] Length = 207 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 88/184 (47%), Positives = 117/184 (63%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 W +AG+DEVGRG L G VV AA+ILDP+ G+ DSKK+S K+R LY++I A+ S Sbjct: 10 WLIAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLGDSKKLSEKRRLALYDEIKDRALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI AT+ A+ AV L + P LIDG P+ L + AV+KGDS+ Sbjct: 70 LGRAEPEEIDRLNILHATMLAMQRAVAGLHLTPDFVLIDGNRCPQ-LAMPSRAVVKGDSL 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M ++YP YGF H GYPTA H + + G + HR +F Sbjct: 129 VPEISAASIMAKVTRDREMCELDQQYPQYGFARHKGYPTAVHMEKLARFGVTPQHRRSFA 188 Query: 203 PLRN 206 P+RN Sbjct: 189 PVRN 192 >gi|145627984|ref|ZP_01783785.1| lipid-A-disaccharide synthase [Haemophilus influenzae 22.1-21] gi|144979759|gb|EDJ89418.1| lipid-A-disaccharide synthase [Haemophilus influenzae 22.1-21] Length = 585 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 86/187 (45%), Positives = 119/187 (63%), Gaps = 1/187 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I A+ Sbjct: 394 QGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKAL 453 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+KG Sbjct: 454 AWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKG 513 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS+ I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR Sbjct: 514 DSLVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAEFGALPQHRR 573 Query: 200 TFRPLRN 206 +F P++ Sbjct: 574 SFAPVKK 580 >gi|294500952|ref|YP_003564652.1| ribonuclease HII [Bacillus megaterium QM B1551] gi|294350889|gb|ADE71218.1| ribonuclease HII [Bacillus megaterium QM B1551] Length = 255 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 89/195 (45%), Positives = 125/195 (64%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + +AG+DEVGRG LAGPVV AA+IL P+ G+ DSKK+S KRE Y Sbjct: 60 AYENELYSQGATYIAGVDEVGRGPLAGPVVAAAVILPPDFFLPGLTDSKKLSEAKREAFY 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E+I SA+ I I + ID NI++AT A+ A+E L V P LID +P +P Sbjct: 120 EEICKSAVAIGIGIIGAEVIDSINIYEATKKAMTEAIELLAVQPDELLIDAMKLP--VPI 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAA+S+IAKVTRDR+M+ ++YP YGF+ H+GY T +H + I++ Sbjct: 178 SQQSIIKGDATSISIAASSVIAKVTRDRMMKELGERYPAYGFEKHMGYGTKQHLEAIEKY 237 Query: 192 GPSCIHRLTFRPLRN 206 G HR +F P++N Sbjct: 238 GILPEHRRSFAPIKN 252 >gi|149025509|ref|ZP_01836442.1| ribonuclease HII [Streptococcus pneumoniae SP23-BS72] gi|147929381|gb|EDK80378.1| ribonuclease HII [Streptococcus pneumoniae SP23-BS72] Length = 259 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 86/199 (43%), Positives = 125/199 (62%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + + GIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIVGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + ++ I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQSLSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|149912480|ref|ZP_01901014.1| Ribonuclease H [Roseobacter sp. AzwK-3b] gi|149812886|gb|EDM72712.1| Ribonuclease H [Roseobacter sp. AzwK-3b] Length = 211 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 128/202 (63%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + P F LE VAG+DEVGRG LAGPV AA++LD IP G+NDSK+++ Sbjct: 1 MSTLPDFTLETAAHAAGHLRVAGVDEVGRGPLAGPVTAAAVVLDILRIPEGLNDSKRLTA 60 Query: 66 KKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 K+R L++ I A +SI+ AS + IDK NI +A+ A+ A+ L P ALIDG I Sbjct: 61 KRRAVLHDAILGMAEVSIAHASVEEIDKLNILRASHLAMERAIAGLATPPDMALIDGNLI 120 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P L A AV+KGD SLSIAAASI+AK+TRDR+M +++P YG++++ GYP+ H Sbjct: 121 PRGLQIPAQAVVKGDGKSLSIAAASIVAKITRDRIMWDLAQQFPGYGWETNAGYPSKSHI 180 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 ++ G + HR +F+P+ N+ Sbjct: 181 AALQNIGLTPHHRRSFKPVHNI 202 >gi|77462008|ref|YP_351512.1| ribonuclease HII [Rhodobacter sphaeroides 2.4.1] gi|221640959|ref|YP_002527221.1| ribonuclease HII [Rhodobacter sphaeroides KD131] gi|332559935|ref|ZP_08414257.1| ribonuclease HII [Rhodobacter sphaeroides WS8N] gi|97189247|sp|Q3J6H3|RNH2_RHOS4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807985|sp|B9KRA6|RNH2_RHOSK RecName: Full=Ribonuclease HII; Short=RNase HII gi|77386426|gb|ABA77611.1| ribonuclease HII [Rhodobacter sphaeroides 2.4.1] gi|221161740|gb|ACM02720.1| Ribonuclease HII [Rhodobacter sphaeroides KD131] gi|332277647|gb|EGJ22962.1| ribonuclease HII [Rhodobacter sphaeroides WS8N] Length = 212 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 86/198 (43%), Positives = 125/198 (63%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + E + V G+DEVGRG LAGPV AA+ L P IP G+NDSKK++ +RE Sbjct: 6 PDWTHETAALAEGFTCVVGVDEVGRGPLAGPVTAAAVRLFPGRIPEGLNDSKKLTAPRRE 65 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L +I + A +SI+ AS + ID+ NI +A+ A+ A+ L P ALIDG +P+ L Sbjct: 66 MLAAEIHTVAEVSIAHASVEEIDRLNILQASHLAMGRALAGLPSRPDFALIDGHMVPKGL 125 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + A++KGD++ LSIAAASI+AKV RDR+M +++P YG+ ++ GY T H Q + Sbjct: 126 GHRCRAIVKGDALCLSIAAASIVAKVARDRIMVDLEQQHPGYGWRTNAGYGTKDHLQALL 185 Query: 190 EKGPSCIHRLTFRPLRNL 207 GP+ HR +F+P+ N+ Sbjct: 186 NLGPTPHHRRSFKPVHNI 203 >gi|322385535|ref|ZP_08059179.1| ribonuclease HII [Streptococcus cristatus ATCC 51100] gi|321270273|gb|EFX53189.1| ribonuclease HII [Streptococcus cristatus ATCC 51100] Length = 254 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 88/197 (44%), Positives = 122/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL PN G+NDSKKI KK EE+ Sbjct: 58 LRYEKELYSQGFQALAGIDEVGRGPLAGPVVAAAVILPPNCKIKGLNDSKKIPKKKHEEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A+ + + +Q ID+ NI++AT A+ AV L++ P LID + DL Sbjct: 118 YQAVLDHALAVGLGIMDNQTIDRVNIYEATKLAMLEAVAQLKIKPDYLLIDAMKL--DLS 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD++M + YP Y F + GY T H Q ++ Sbjct: 176 LPQQSIIKGDANSLSIAAASIVAKVTRDKMMADFDQIYPGYDFAQNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 NGVTPIHRKTFEPVKSM 252 >gi|117923822|ref|YP_864439.1| RNase HII [Magnetococcus sp. MC-1] gi|189043692|sp|A0L4Z0|RNH2_MAGSM RecName: Full=Ribonuclease HII; Short=RNase HII gi|117607578|gb|ABK43033.1| RNase HII [Magnetococcus sp. MC-1] Length = 213 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 94/202 (46%), Positives = 129/202 (63%), Gaps = 4/202 (1%) Query: 10 PHFELEAMVREKN--MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 P ELE + N + + G+DE GRG L GPVV AA++LD +N+P G+NDSK++S KK Sbjct: 9 PDLELECALLRSNRAIKTLCGVDEAGRGPLCGPVVAAAVVLDLDNLPVGLNDSKQLSAKK 68 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ--VIPRSALIDGRSI 125 RE+L+E+I ++ + + AS ID NI A++ A+ AV LQ ++ ALIDG + Sbjct: 69 REQLFEQIYVTSQVGVGEASVAEIDALNILHASMLAMVRAVTALQGRLVVDHALIDGNRV 128 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P LP AV+KGD+ SLSIAAASIIAKVTRDR+M + YP YG+ GYPT H Sbjct: 129 PATLPVPGQAVVKGDAKSLSIAAASIIAKVTRDRIMAELDRDYPHYGWAKSQGYPTQAHL 188 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 Q + G + HR +F+P++ L Sbjct: 189 QALALHGVTPHHRRSFKPVKQL 210 >gi|310817212|ref|YP_003965176.1| ribonuclease HII [Ketogulonicigenium vulgare Y25] gi|308755947|gb|ADO43876.1| ribonuclease HII [Ketogulonicigenium vulgare Y25] Length = 209 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 134/202 (66%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + +RP + E + + VAG+DEVGRG LAGPV AA+ILDP NIP G+NDSKK+S Sbjct: 1 MTDRPDYSFELAAQARGFARVAGVDEVGRGPLAGPVTAAAVILDPANIPEGLNDSKKLSA 60 Query: 66 KKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 K+R+ L+++I + A +SI+ A+ ID+ NI +A+ A+ A+ L L+DG + Sbjct: 61 KRRDALFDQIMAVAQVSIAHATVAEIDEMNILRASHVAMCRALAGL--PADYVLVDGNLL 118 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P+DL A A+I GD+ SLSIAAASIIAKV RDR+M +++P YG++ + GYP+A H+ Sbjct: 119 PKDLSLPAEALISGDARSLSIAAASIIAKVVRDRIMVDLAQQFPAYGWERNAGYPSAAHR 178 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 + G + HR +F+P+ N+ Sbjct: 179 AALIAHGVTPHHRRSFKPVHNI 200 >gi|149202924|ref|ZP_01879895.1| Ribonuclease H [Roseovarius sp. TM1035] gi|149143470|gb|EDM31506.1| Ribonuclease H [Roseovarius sp. TM1035] Length = 207 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 87/198 (43%), Positives = 126/198 (63%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + +AG+DEVGRG LAGPV AA+ILDP NIP G+NDSKK+S +R Sbjct: 4 PDFTHERAALSEGYLRIAGVDEVGRGPLAGPVTAAAVILDPGNIPEGLNDSKKLSAARRA 63 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L E I +SA S++ AS ID+ NI +A A+ A+ L P LIDG IP L Sbjct: 64 ILCEAIHASAEASVAHASVAEIDQLNILRAAHLAMERAIAALDPQPDLVLIDGNLIPRGL 123 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A A+++GD++S+SIAAASI+AK+ RD++M +++P YG++ + GYP+ H++ + Sbjct: 124 TLPARAIVRGDAVSVSIAAASIVAKIRRDQIMWDLAQQFPGYGWERNAGYPSKSHREALL 183 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + HR +F+P+ N+ Sbjct: 184 NLGVTPHHRRSFKPVHNI 201 >gi|322515100|ref|ZP_08068107.1| ribonuclease HII [Actinobacillus ureae ATCC 25976] gi|322118906|gb|EFX91088.1| ribonuclease HII [Actinobacillus ureae ATCC 25976] Length = 197 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 90/187 (48%), Positives = 120/187 (64%), Gaps = 2/187 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 N +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L E+I + A+ Sbjct: 9 NAHLIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLLLAEEIKAKALC 68 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 S+ A + ID+ NI AT+ A+ AV L + P L+DG IP LP A AVIKGD Sbjct: 69 WSLGRAEPEEIDQLNILHATMLAMQRAVAGLNIWPDFVLVDGNHIPT-LPMPAQAVIKGD 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+ I+AASI+AKV RD+ M K+YP+YGF H GYPT H + +++ G + HR + Sbjct: 128 SLVAEISAASILAKVARDQEMDELDKQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKS 187 Query: 201 FRPLRNL 207 F P++ + Sbjct: 188 FAPVKKI 194 >gi|254440277|ref|ZP_05053771.1| ribonuclease HII [Octadecabacter antarcticus 307] gi|198255723|gb|EDY80037.1| ribonuclease HII [Octadecabacter antarcticus 307] Length = 206 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 91/201 (45%), Positives = 127/201 (63%), Gaps = 3/201 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + + + +AG+DEVGRG LAGPV AA+ILDP NIP G+NDSK +S KKRE Sbjct: 5 PDFTFEQDLFARGILRIAGVDEVGRGPLAGPVTAAAVILDPANIPDGLNDSKALSRKKRE 64 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIP 126 L I +SA +SI+ A+ + ID+ NI +A+ A+ A+ L ALIDG +P Sbjct: 65 LLEPLIFASAEVSIAHATVEEIDEINILRASHLAMERAIAGLGAGLNRVDHALIDGNMVP 124 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 L A +IKGD+ SLSIAAASI+AK+ RDR+M + YP YG+D++ GY + H Sbjct: 125 RGLIIPATTIIKGDARSLSIAAASIVAKICRDRIMVELAQHYPGYGWDTNAGYGSKSHIS 184 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 ++ G + HR +F+P+ N+ Sbjct: 185 ALQNIGVTPHHRRSFKPVHNM 205 >gi|28899078|ref|NP_798683.1| ribonuclease HII [Vibrio parahaemolyticus RIMD 2210633] gi|260362393|ref|ZP_05775348.1| ribonuclease HII [Vibrio parahaemolyticus K5030] gi|260876840|ref|ZP_05889195.1| ribonuclease HII [Vibrio parahaemolyticus AN-5034] gi|260897272|ref|ZP_05905768.1| ribonuclease HII [Vibrio parahaemolyticus Peru-466] gi|31076897|sp|Q87MF1|RNH2_VIBPA RecName: Full=Ribonuclease HII; Short=RNase HII gi|28807302|dbj|BAC60567.1| ribonuclease HII [Vibrio parahaemolyticus RIMD 2210633] gi|308085359|gb|EFO35054.1| ribonuclease HII [Vibrio parahaemolyticus Peru-466] gi|308091461|gb|EFO41156.1| ribonuclease HII [Vibrio parahaemolyticus AN-5034] gi|308113983|gb|EFO51523.1| ribonuclease HII [Vibrio parahaemolyticus K5030] Length = 211 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 92/200 (46%), Positives = 122/200 (61%), Gaps = 7/200 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE + +AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KK Sbjct: 13 ELPPFEYP-----QGYQLIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKK 67 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L +I A+ ++ S + ID+ NI +AT+ A+ A+ L+V P ALIDG P Sbjct: 68 RLALLPEIKEKALAWAVGRCSPEEIDELNILQATMVAMQRAITGLKVQPDLALIDGNRCP 127 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 E LP + AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPT H + Sbjct: 128 E-LPMDSQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKQYPQFGFAKHKGYPTKAHFE 186 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F+P++ Sbjct: 187 AIEQHGVISEHRKSFKPVKK 206 >gi|307706602|ref|ZP_07643409.1| ribonuclease HII [Streptococcus mitis SK321] gi|307618057|gb|EFN97217.1| ribonuclease HII [Streptococcus mitis SK321] Length = 259 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 126/199 (63%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGVDEVGRGPLAGPVVAAAVILPKNCKIRGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIMDNQVIDQVNIYEATKLAMQEAISQLSPQPDHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFTANAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|260902377|ref|ZP_05910772.1| ribonuclease HII [Vibrio parahaemolyticus AQ4037] gi|308110185|gb|EFO47725.1| ribonuclease HII [Vibrio parahaemolyticus AQ4037] gi|328474385|gb|EGF45190.1| ribonuclease HII [Vibrio parahaemolyticus 10329] Length = 211 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 87/187 (46%), Positives = 117/187 (62%), Gaps = 2/187 (1%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + +AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKR L +I A+ Sbjct: 21 QGYQLIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEKAL 80 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ S + ID+ NI +AT+ A+ A+ L+V P LIDG PE LP + AV+KG Sbjct: 81 AWAVGRCSPEEIDELNILQATMVAMQRAIAGLKVQPDLVLIDGNRCPE-LPMDSQAVVKG 139 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D I+AASIIAKV RD+ M K+YP +GF H GYPT H + I++ G HR Sbjct: 140 DLRVAEISAASIIAKVVRDQEMEELDKQYPQFGFAKHKGYPTKAHFEAIEQHGVISEHRK 199 Query: 200 TFRPLRN 206 +F+P++ Sbjct: 200 SFKPVKK 206 >gi|126460898|ref|YP_001042012.1| ribonuclease HII [Rhodobacter sphaeroides ATCC 17029] gi|166226644|sp|A3PFX4|RNH2_RHOS1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|126102562|gb|ABN75240.1| Ribonuclease H [Rhodobacter sphaeroides ATCC 17029] Length = 212 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 86/198 (43%), Positives = 125/198 (63%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + E + V G+DEVGRG LAGPV AA+ L P IP G+NDSKK++ +RE Sbjct: 6 PDWTHETAALAEGFTCVVGVDEVGRGPLAGPVTAAAVRLFPGRIPEGLNDSKKLTALRRE 65 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L +I + A +SI+ AS + ID+ NI +A+ A+ A+ L P ALIDG +P+ L Sbjct: 66 MLAAEIHTVAEVSIAHASVEEIDRLNILQASHLAMGRALAGLPSRPDFALIDGHMVPKGL 125 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + A++KGD++ LSIAAASI+AKV RDR+M +++P YG+ ++ GY T H Q + Sbjct: 126 GHRCRAIVKGDALCLSIAAASIVAKVARDRIMVDLEQQHPGYGWRTNAGYGTKDHLQALL 185 Query: 190 EKGPSCIHRLTFRPLRNL 207 GP+ HR +F+P+ N+ Sbjct: 186 NLGPTPHHRRSFKPVHNI 203 >gi|225858944|ref|YP_002740454.1| ribonuclease HII [Streptococcus pneumoniae 70585] gi|254807989|sp|C1C7C8|RNH2_STRP7 RecName: Full=Ribonuclease HII; Short=RNase HII gi|225721844|gb|ACO17698.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae 70585] Length = 259 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 125/199 (62%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++ Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFSGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|295399793|ref|ZP_06809774.1| Ribonuclease H [Geobacillus thermoglucosidasius C56-YS93] gi|312111695|ref|YP_003990011.1| ribonuclease H [Geobacillus sp. Y4.1MC1] gi|294978196|gb|EFG53793.1| Ribonuclease H [Geobacillus thermoglucosidasius C56-YS93] gi|311216796|gb|ADP75400.1| Ribonuclease H [Geobacillus sp. Y4.1MC1] Length = 268 Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 86/196 (43%), Positives = 124/196 (63%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + + +AGIDE GRG LAGPVV AA+IL + G+NDSKK+S KRE L+ Sbjct: 61 RYERQLFAQGIKYIAGIDEAGRGPLAGPVVAAAVILPKDAYIPGLNDSKKLSEAKRETLF 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I S A+ I I + ID+ NI++AT A+ AVE L P L+D ++P +P Sbjct: 121 HMIQSCAVSIGIGVVTAAEIDEINIYEATKKAMIKAVEQLSPKPDYLLVDAMTLP--IPM 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +++KGD+ S+SIAA+S+IAKVTRD M+ K+YP YGF+ ++GY TA+H + I+ Sbjct: 179 PQQSIVKGDANSVSIAASSVIAKVTRDHFMKQLAKRYPQYGFEKNMGYGTAQHLEAIRTY 238 Query: 192 GPSCIHRLTFRPLRNL 207 G HRL+F P++ + Sbjct: 239 GTIDEHRLSFSPIKEM 254 >gi|225856834|ref|YP_002738345.1| ribonuclease HII [Streptococcus pneumoniae P1031] gi|254807993|sp|C1CKQ7|RNH2_STRZP RecName: Full=Ribonuclease HII; Short=RNase HII gi|225725074|gb|ACO20926.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae P1031] Length = 259 Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 125/199 (62%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++ Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFSGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|148994505|ref|ZP_01823685.1| ribonuclease HII [Streptococcus pneumoniae SP9-BS68] gi|168483218|ref|ZP_02708170.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC1873-00] gi|168488985|ref|ZP_02713184.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae SP195] gi|147927175|gb|EDK78211.1| ribonuclease HII [Streptococcus pneumoniae SP9-BS68] gi|172043371|gb|EDT51417.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC1873-00] gi|183572489|gb|EDT93017.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae SP195] gi|332201627|gb|EGJ15697.1| ribonuclease HII [Streptococcus pneumoniae GA47368] Length = 259 Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 125/199 (62%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++ Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFSGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|171912710|ref|ZP_02928180.1| Ribonuclease H [Verrucomicrobium spinosum DSM 4136] Length = 233 Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 88/202 (43%), Positives = 126/202 (62%), Gaps = 3/202 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 RP F E +R++ VAG+DE GRG LAGPV VAA+IL + ++DSK+++ +R Sbjct: 27 RPTFRYEMELRQEGHQVVAGVDEAGRGPLAGPVSVAAVILPDDFTHAELHDSKQLTELRR 86 Query: 69 EELYEKITSSA--IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 E +Y+++ A + ID+ NI +AT + AV+ L ++P + LIDG +P Sbjct: 87 ERIYDELMGRADVLWCHVMVEVDEIDRINILQATRMGMRRAVQGLSMLPHAVLIDGTPVP 146 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D P A++KGD++SLSIAAAS+IAKV RDRLMR A YP YGFD H GY T +H + Sbjct: 147 -DFPVPHRALVKGDALSLSIAAASVIAKVARDRLMRQAALDYPVYGFDQHKGYGTPEHLE 205 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 ++ GP +HR +F P+ L+ Sbjct: 206 ALRRHGPCPLHRRSFSPVSQLT 227 >gi|153839485|ref|ZP_01992152.1| ribonuclease HII [Vibrio parahaemolyticus AQ3810] gi|149746990|gb|EDM57978.1| ribonuclease HII [Vibrio parahaemolyticus AQ3810] Length = 211 Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 92/200 (46%), Positives = 122/200 (61%), Gaps = 7/200 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE + +AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KK Sbjct: 13 ELPPFEYP-----QGYQLIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKK 67 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L +I A+ ++ S + ID+ NI +AT+ A+ A+ L+V P ALIDG P Sbjct: 68 RLALLPEIKEKALAWAVGRCSPEEIDELNILQATMVAMQRAIAGLKVQPDLALIDGNRCP 127 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 E LP + AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPT H + Sbjct: 128 E-LPMDSQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKQYPQFGFAKHKGYPTKAHFE 186 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F+P++ Sbjct: 187 AIEQHGVISEHRKSFKPVKK 206 >gi|332073501|gb|EGI83980.1| ribonuclease HII [Streptococcus pneumoniae GA17570] Length = 260 Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 125/199 (62%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++ Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFSGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|239826598|ref|YP_002949222.1| ribonuclease H [Geobacillus sp. WCH70] gi|259494066|sp|C5D8U9|RNH2_GEOSW RecName: Full=Ribonuclease HII; Short=RNase HII gi|239806891|gb|ACS23956.1| Ribonuclease H [Geobacillus sp. WCH70] Length = 277 Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 87/196 (44%), Positives = 123/196 (62%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + E+ + +AGIDE GRG LAGPVV AA++L + G+NDSKK+S KRE L+ Sbjct: 61 RYERQLFEQGIEYIAGIDEAGRGPLAGPVVAAAVMLPKDAYIPGLNDSKKLSEAKREMLF 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I S AI I I + ID+ NI++AT A+ AVE L P LID ++P + Sbjct: 121 HMIQSCAISIGIGVVTAAEIDEMNIYEATKKAMIKAVEQLSPKPDYLLIDAMTLP--IST 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +++KGD+ S+SIAA+SIIAKVTRD M+ K+YP YGF+ ++GY TA+H + I+ Sbjct: 179 PQQSIVKGDANSVSIAASSIIAKVTRDHFMKQLAKQYPQYGFEKNMGYGTAQHLEAIRVY 238 Query: 192 GPSCIHRLTFRPLRNL 207 G HR +F P++ + Sbjct: 239 GTIDEHRRSFSPIKEM 254 >gi|307708682|ref|ZP_07645145.1| ribonuclease HII [Streptococcus mitis NCTC 12261] gi|307615256|gb|EFN94466.1| ribonuclease HII [Streptococcus mitis NCTC 12261] Length = 259 Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats. Identities = 88/209 (42%), Positives = 129/209 (61%), Gaps = 3/209 (1%) Query: 2 FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61 + + E + ++ + +AG+DEVGRG LAGPVV AA+IL N G+NDSK Sbjct: 48 LDEDLRLKSMLSYEKELYKQGLTMIAGVDEVGRGPLAGPVVAAAVILPKNCKITGLNDSK 107 Query: 62 KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 KI KK E+++ + A+ I I +Q ID+ NI++AT A+ A+ L P LI Sbjct: 108 KIPKKKHLEIFQAVQDQALSIGIGIMDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLI 167 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 D + DLP ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY Sbjct: 168 DAMKL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEFDQQFPGYDFAANAGYG 225 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209 TAKH + +K+ G + IHR +F P+++L + Sbjct: 226 TAKHLEGLKKIGVTPIHRTSFEPVKSLVL 254 >gi|148989186|ref|ZP_01820576.1| ribonuclease HII [Streptococcus pneumoniae SP6-BS73] gi|147925409|gb|EDK76487.1| ribonuclease HII [Streptococcus pneumoniae SP6-BS73] Length = 259 Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats. Identities = 85/199 (42%), Positives = 124/199 (62%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + + GIDEVGRG LAGPVV AA+IL N +NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIVGIDEVGRGPLAGPVVAAAVILPKNCKIKDLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + ++ I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQSLSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|156975492|ref|YP_001446399.1| ribonuclease HII [Vibrio harveyi ATCC BAA-1116] gi|166226667|sp|A7MY01|RNH2_VIBHB RecName: Full=Ribonuclease HII; Short=RNase HII gi|156527086|gb|ABU72172.1| hypothetical protein VIBHAR_03223 [Vibrio harveyi ATCC BAA-1116] Length = 212 Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats. Identities = 93/200 (46%), Positives = 122/200 (61%), Gaps = 7/200 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE + VAG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KK Sbjct: 13 ELPPFEYP-----QGYQLVAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKK 67 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L +I A+ ++ S + ID+ NI +AT+ A+ A+ L+V P ALIDG P Sbjct: 68 RLALLPEIKEKALAWAVGRCSPEEIDELNILQATMVAMQRAIAGLKVQPDLALIDGNRCP 127 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 E LP + AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPT H + Sbjct: 128 E-LPMDSQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKQYPQFGFAKHKGYPTKAHFE 186 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F+P++ Sbjct: 187 AIEQHGVISEHRKSFKPVKK 206 >gi|254462688|ref|ZP_05076104.1| ribonuclease HII [Rhodobacterales bacterium HTCC2083] gi|206679277|gb|EDZ43764.1| ribonuclease HII [Rhodobacteraceae bacterium HTCC2083] Length = 208 Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats. Identities = 88/198 (44%), Positives = 131/198 (66%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + E + + + VAG+DEVGRG LAGPV AA+ILDP IP G+NDSKK+S KKR+ Sbjct: 6 PDYSFEQRAQARGLSIVAGVDEVGRGPLAGPVTAAAVILDPMRIPQGLNDSKKLSAKKRQ 65 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L++ + A +SI+ AS + ID+ NI +A+ A+ AV L+ P LIDG IP L Sbjct: 66 ALHDDLLLCADVSIAHASVEEIDELNILRASHLAMERAVAGLKQRPNHLLIDGNMIPRGL 125 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + A++KGDS S+SI+AASI+AK+ RD +M + YP YG++++ GYP+ H+ ++ Sbjct: 126 AGLSEAIVKGDSRSVSISAASIVAKICRDYVMWDLGQHYPGYGWETNAGYPSKSHKLALE 185 Query: 190 EKGPSCIHRLTFRPLRNL 207 + G + HR +F+P+ N+ Sbjct: 186 KLGVTPHHRRSFKPVHNI 203 >gi|107103156|ref|ZP_01367074.1| hypothetical protein PaerPA_01004225 [Pseudomonas aeruginosa PACS2] gi|218890133|ref|YP_002438997.1| ribonuclease HII [Pseudomonas aeruginosa LESB58] gi|254236556|ref|ZP_04929879.1| ribonuclease HII [Pseudomonas aeruginosa C3719] gi|254242340|ref|ZP_04935662.1| ribonuclease HII [Pseudomonas aeruginosa 2192] gi|226736823|sp|B7V7U6|RNH2_PSEA8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|126168487|gb|EAZ53998.1| ribonuclease HII [Pseudomonas aeruginosa C3719] gi|126195718|gb|EAZ59781.1| ribonuclease HII [Pseudomonas aeruginosa 2192] gi|218770356|emb|CAW26121.1| ribonuclease HII [Pseudomonas aeruginosa LESB58] Length = 201 Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats. Identities = 94/184 (51%), Positives = 119/184 (64%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L GPVV AA+ILDP+ G+NDSKK+S +RE L+E+I A+ I Sbjct: 13 LVAGVDEVGRGPLCGPVVTAAVILDPSRPILGLNDSKKLSEARREALFEEIREKALAWCI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI AT+ A+ AVE L V PR ALIDG P+ L V+KGDS Sbjct: 73 ARAEVEEIDRLNILHATMLAMQRAVEGLSVTPRLALIDGNRCPK-LAVPCAPVVKGDSQV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV+RDR M + YP YG H GYPTA H + + GP+ IHR +F P Sbjct: 132 PAIAAASILAKVSRDREMVELDRVYPGYGMAGHKGYPTAVHLEALSRLGPTPIHRRSFAP 191 Query: 204 LRNL 207 +R L Sbjct: 192 VREL 195 >gi|153835395|ref|ZP_01988062.1| ribonuclease HII [Vibrio harveyi HY01] gi|269960605|ref|ZP_06174977.1| ribonuclease HII [Vibrio harveyi 1DA3] gi|148868081|gb|EDL67253.1| ribonuclease HII [Vibrio harveyi HY01] gi|269834682|gb|EEZ88769.1| ribonuclease HII [Vibrio harveyi 1DA3] Length = 212 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 92/200 (46%), Positives = 122/200 (61%), Gaps = 7/200 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE + VAG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KK Sbjct: 13 ELPPFEYP-----QGYQLVAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKK 67 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L +I A+ ++ S + ID+ NI +AT+ A+ A+ L+V P ALIDG P Sbjct: 68 RLALLPEIKEKALAWAVGRCSPEEIDELNILQATMVAMQRAIAGLKVQPDLALIDGNRCP 127 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + LP + AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPT H + Sbjct: 128 Q-LPMDSQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKQYPQFGFAKHKGYPTKAHFE 186 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F+P++ Sbjct: 187 AIEQHGVISEHRKSFKPVKK 206 >gi|116051639|ref|YP_789522.1| ribonuclease HII [Pseudomonas aeruginosa UCBPP-PA14] gi|296387853|ref|ZP_06877328.1| ribonuclease HII [Pseudomonas aeruginosa PAb1] gi|313109047|ref|ZP_07795019.1| ribonuclease HII [Pseudomonas aeruginosa 39016] gi|122260782|sp|Q02RB4|RNH2_PSEAB RecName: Full=Ribonuclease HII; Short=RNase HII gi|115586860|gb|ABJ12875.1| ribonuclease HII [Pseudomonas aeruginosa UCBPP-PA14] gi|310881521|gb|EFQ40115.1| ribonuclease HII [Pseudomonas aeruginosa 39016] Length = 201 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 94/184 (51%), Positives = 120/184 (65%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L GPVV AA+ILDP+ G+NDSKK+S +RE L+E+I A+ I Sbjct: 13 LVAGVDEVGRGPLCGPVVTAAVILDPSRPILGLNDSKKLSEARREALFEEIREKALAWCI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI AT+ A+ AVE L V PR ALIDG P+ L + V+KGDS Sbjct: 73 ARAEVEEIDRLNILHATMLAMQRAVEGLSVTPRLALIDGNRCPK-LAVPSAPVVKGDSQV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV+RDR M + YP YG H GYPTA H + + GP+ IHR +F P Sbjct: 132 PAIAAASILAKVSRDREMVELDRVYPGYGMAGHKGYPTAVHLEALSRLGPTPIHRRSFAP 191 Query: 204 LRNL 207 +R L Sbjct: 192 VREL 195 >gi|222085047|ref|YP_002543576.1| ribonuclease HII protein [Agrobacterium radiobacter K84] gi|221722495|gb|ACM25651.1| ribonuclease HII protein [Agrobacterium radiobacter K84] Length = 218 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 105/206 (50%), Positives = 139/206 (67%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 M + P P FELE + R WPVAG DE GRG LAGPVV AA+ILDP IP G+NDS Sbjct: 10 MLFDEGPIVPTFELELIARRAGHWPVAGADEAGRGPLAGPVVAAAVILDPERIPQGLNDS 69 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K++S +RE L+ +I ++A +SI+S+S ID +I KA+LDA+ A+ +L + L Sbjct: 70 KQLSAARREALFAEILATATVSIASSSAGRIDVTDIRKASLDAMRRAICSLAMPASYVLT 129 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG +P L C AV+KGD+ S SIAAASI+AKVTRDR+M A +P YGF +H GY Sbjct: 130 DGLDVPAGLACPGKAVVKGDARSFSIAAASIVAKVTRDRMMARAGIVFPAYGFAAHAGYG 189 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206 TA+H+ I++ GP +HR++FRPLR Sbjct: 190 TAQHRAGIEKHGPCSLHRMSFRPLRR 215 >gi|270292737|ref|ZP_06198948.1| ribonuclease HII [Streptococcus sp. M143] gi|270278716|gb|EFA24562.1| ribonuclease HII [Streptococcus sp. M143] Length = 259 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 88/197 (44%), Positives = 124/197 (62%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ M +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGMTFIAGVDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A+ I + +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALAIGVGIMDNQIIDQVNIYEATKLAMKEAISQLSPQPEHLLIDAMQL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD+ SLSIAAASI+AKVTRD +M+ +YP Y F ++ GY TAKH + +++ Sbjct: 176 ISQTAIIKGDANSLSIAAASIVAKVTRDNIMKDYDNQYPGYDFAANAGYGTAKHLEGLEK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++ L Sbjct: 236 LGVTPIHRTSFEPVKTL 252 >gi|327392811|dbj|BAK10233.1| ribonuclease HII RnhB [Pantoea ananatis AJ13355] Length = 231 Score = 271 bits (693), Expect = 6e-71, Method: Composition-based stats. Identities = 94/207 (45%), Positives = 120/207 (57%), Gaps = 9/207 (4%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 M C S+P F A +AG+DEVGRG L G VV AA+ILDP N G+ DS Sbjct: 17 MRCWSLP-MADFIYPAA------GCIAGVDEVGRGPLVGAVVTAAVILDPANPVPGLADS 69 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK+S K+R L+++I A+ S+ A ID NI AT+ A+ AV L + P L Sbjct: 70 KKLSEKRRLALFDQIKEKALAWSLGRAEPDEIDNLNILHATMLAMQRAVAGLSITPDFVL 129 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 IDG P LP + AV+KGDS+ I+AASIIAKVTRDR M +P YGF H GY Sbjct: 130 IDGNRCPA-LPMPSLAVVKGDSLVAEISAASIIAKVTRDREMAELDLLFPQYGFAQHKGY 188 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRN 206 PTA H + + + G + HR +F P+RN Sbjct: 189 PTALHMEKLTQYGATPHHRRSFAPVRN 215 >gi|254503735|ref|ZP_05115886.1| ribonuclease HII [Labrenzia alexandrii DFL-11] gi|222439806|gb|EEE46485.1| ribonuclease HII [Labrenzia alexandrii DFL-11] Length = 218 Score = 271 bits (693), Expect = 6e-71, Method: Composition-based stats. Identities = 89/205 (43%), Positives = 125/205 (60%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 +F + P+ P ++E + + G+DE GRG AGPVV AA+ILD N+P G+NDS Sbjct: 7 LFDLAFPDNPDLKIEKKHAKSYDGLLCGVDEAGRGPWAGPVVTAAVILDYANVPAGLNDS 66 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 KK++ KRE L+ +I ++ + +SAS +DK NI ATL A+ AV L +P+ LI Sbjct: 67 KKLTEAKRESLFGEILKTSWVCAASASPATVDKLNIRTATLSAMVRAVNGLPRVPQYVLI 126 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DGR +P L A+IKGD L +AAASI+AKV RDR+M ++P YGF H GY Sbjct: 127 DGRDVPPGLAQPGQALIKGDGRCLCVAAASIVAKVLRDRMMVALEPEFPGYGFAQHKGYG 186 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLR 205 HQ + GP+ HR++F+P+R Sbjct: 187 VPAHQAALDTLGPTAHHRMSFKPVR 211 >gi|197336053|ref|YP_002156776.1| ribonuclease HII [Vibrio fischeri MJ11] gi|238690074|sp|B5F9W2|RNH2_VIBFM RecName: Full=Ribonuclease HII; Short=RNase HII gi|197317543|gb|ACH66990.1| ribonuclease HII [Vibrio fischeri MJ11] Length = 207 Score = 271 bits (693), Expect = 6e-71, Method: Composition-based stats. Identities = 94/202 (46%), Positives = 119/202 (58%), Gaps = 7/202 (3%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P FE AG+DEVGRG L G VV AA+ILDPNN G+ DSKK++ K Sbjct: 8 KELPPFEYPE-----GYQLFAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTDK 62 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KRE L+ +I A+ S+ ID+ NI +AT+ A+ A+ L + P ALIDG + Sbjct: 63 KRELLFPEIQEKALAWSLGRCEAHEIDELNILQATMVAMQRAIAGLNITPDFALIDGNKV 122 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 PE LP AV+KGD I+AASIIAKVTRDR M K YP YGF H GYPT H Sbjct: 123 PE-LPMAGLAVVKGDLRVQEISAASIIAKVTRDREMEELDKAYPQYGFAKHKGYPTKAHF 181 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 + I+E G HR +F+P++ + Sbjct: 182 EAIEEHGVISEHRRSFKPVKRV 203 >gi|254363172|ref|ZP_04979221.1| ribonuclease H [Mannheimia haemolytica PHL213] gi|261493949|ref|ZP_05990457.1| ribonuclease H [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494766|ref|ZP_05991245.1| ribonuclease H [Mannheimia haemolytica serotype A2 str. OVINE] gi|153095066|gb|EDN75617.1| ribonuclease H [Mannheimia haemolytica PHL213] gi|261309583|gb|EEY10807.1| ribonuclease H [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310381|gb|EEY11576.1| ribonuclease H [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 198 Score = 271 bits (693), Expect = 6e-71, Method: Composition-based stats. Identities = 90/187 (48%), Positives = 117/187 (62%), Gaps = 2/187 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 N +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR+ L E+I + A+ Sbjct: 8 NARLIAGVDEVGRGPLVGAVVTAAVILDPNNPIQGLTDSKKLSEKKRQALAEEIKAKALS 67 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 S+ A ID+ NI AT+ A+ AV L + P LIDG P LP A AV+KGD Sbjct: 68 WSLGRAEPTEIDELNILNATMLAMQRAVAGLHIQPDFVLIDGNR-PPKLPMPAQAVVKGD 126 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+ I+AASIIAKV RD+ M +++P YGF H GYPT H + + E G + HR + Sbjct: 127 SLVAEISAASIIAKVARDQEMDELDQQFPQYGFAQHKGYPTKLHFEKLAEFGATPYHRKS 186 Query: 201 FRPLRNL 207 F P+R + Sbjct: 187 FAPVRKV 193 >gi|15901021|ref|NP_345625.1| ribonuclease HII [Streptococcus pneumoniae TIGR4] gi|111658304|ref|ZP_01408994.1| hypothetical protein SpneT_02000533 [Streptococcus pneumoniae TIGR4] gi|32171703|sp|Q97QP5|RNH2_STRPN RecName: Full=Ribonuclease HII; Short=RNase HII gi|14972634|gb|AAK75265.1| ribonuclease HII [Streptococcus pneumoniae TIGR4] Length = 259 Score = 271 bits (693), Expect = 6e-71, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 126/199 (63%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILSKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD L++ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELLKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|241890105|ref|ZP_04777403.1| ribonuclease HII [Gemella haemolysans ATCC 10379] gi|241863727|gb|EER68111.1| ribonuclease HII [Gemella haemolysans ATCC 10379] Length = 258 Score = 271 bits (693), Expect = 6e-71, Method: Composition-based stats. Identities = 96/208 (46%), Positives = 129/208 (62%), Gaps = 3/208 (1%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 +F E+ F E + GIDEVGRG LAGPVV AA+IL +N G+NDS Sbjct: 46 LFYKKEYEKKSF-YENKCYNNGCKYICGIDEVGRGPLAGPVVAAAVILKKDNYFEGLNDS 104 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK+S KKREELYE+I A+ +I + I+K+NI+ A A+ AVE L+V P L Sbjct: 105 KKLSEKKREELYEQIRKEAVAYAICEVDNIEIEKYNIYNAARIAMQRAVEKLEVKPDFLL 164 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 ID E+ P F+++KGD S+SIAAAS+IAKV RD LM+ KKYP Y F+++ GY Sbjct: 165 IDAMPF-ENYPIPNFSMVKGDEKSVSIAAASVIAKVYRDNLMKEYAKKYPHYDFENNAGY 223 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 T KH + +KE G + IHR F P++++ Sbjct: 224 GTKKHLEGLKEHGVTPIHRRDFEPIKSM 251 >gi|15598838|ref|NP_252332.1| ribonuclease HII [Pseudomonas aeruginosa PAO1] gi|37999786|sp|Q9HXY9|RNH2_PSEAE RecName: Full=Ribonuclease HII; Short=RNase HII gi|9949802|gb|AAG07030.1|AE004784_3 ribonuclease HII [Pseudomonas aeruginosa PAO1] Length = 201 Score = 270 bits (692), Expect = 6e-71, Method: Composition-based stats. Identities = 95/184 (51%), Positives = 120/184 (65%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L GPVV AA+ILDP+ G+NDSKK+S +RE L+E+I A+ I Sbjct: 13 LVAGVDEVGRGPLCGPVVTAAVILDPSRPILGLNDSKKLSEARREALFEEIREKALAWCI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI AT+ A+ AVE L VIPR ALIDG P+ L V+KGDS Sbjct: 73 ARAEVEEIDRLNILHATMLAMQRAVEGLSVIPRLALIDGNRCPK-LAVPCAPVVKGDSQV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV+RDR M + YP YG H GYPTA H + + GP+ IHR +F P Sbjct: 132 PAIAAASILAKVSRDREMVELDRVYPGYGMAGHKGYPTAVHLEALSRLGPTPIHRRSFAP 191 Query: 204 LRNL 207 +R L Sbjct: 192 VREL 195 >gi|152983475|ref|YP_001346881.1| ribonuclease HII [Pseudomonas aeruginosa PA7] gi|166226639|sp|A6V1E6|RNH2_PSEA7 RecName: Full=Ribonuclease HII; Short=RNase HII gi|150958633|gb|ABR80658.1| ribonuclease HII [Pseudomonas aeruginosa PA7] Length = 201 Score = 270 bits (692), Expect = 7e-71, Method: Composition-based stats. Identities = 93/184 (50%), Positives = 119/184 (64%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L GPVV AA+ILDP+ G+NDSKK+S +RE L+E+I A+ + Sbjct: 13 LVAGVDEVGRGPLCGPVVTAAVILDPSRPILGLNDSKKLSEARREALFEEIREKALAWCV 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI AT+ A+ AVE L V PR ALIDG P L + V+KGDS Sbjct: 73 ARAEVEEIDRLNILHATMLAMQRAVEGLSVTPRLALIDGNRCPR-LAVPSAPVVKGDSQV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV+RDR M + YP YG H GYPTA H + + GP+ IHR +F P Sbjct: 132 PAIAAASILAKVSRDREMVELDRLYPGYGMAGHKGYPTAVHLEALSRLGPTPIHRRSFAP 191 Query: 204 LRNL 207 +R L Sbjct: 192 VREL 195 >gi|324992892|gb|EGC24812.1| ribonuclease HII [Streptococcus sanguinis SK405] Length = 254 Score = 270 bits (692), Expect = 7e-71, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 121/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+ Sbjct: 58 LRYEKELYQAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + + A+ + + ++ ID+ NI++AT A+ A+ L P LID + D+ Sbjct: 118 YQTVMNKALAVGVGLIDNEIIDQVNIYEATKLAMKEALSKLSFKPDYLLIDAMKL--DID 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM K+YP Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 HGVTPIHRKTFEPVKSM 252 >gi|323495348|ref|ZP_08100426.1| ribonuclease HII [Vibrio brasiliensis LMG 20546] gi|323310419|gb|EGA63605.1| ribonuclease HII [Vibrio brasiliensis LMG 20546] Length = 205 Score = 270 bits (692), Expect = 7e-71, Method: Composition-based stats. Identities = 89/186 (47%), Positives = 115/186 (61%), Gaps = 2/186 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 VAG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKR L +I A+ Sbjct: 16 GYQLVAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEKALA 75 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 S+ S + ID+ NI +AT+ A+ A+ L V P ALIDG PE LP + AV+KGD Sbjct: 76 WSVGRCSPEEIDQLNILQATMVAMQRAIAGLGVQPDLALIDGNRCPE-LPMDSQAVVKGD 134 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 I+AASIIAKV RD+ M K +P +GF H GYPT H + I++ G HR + Sbjct: 135 LRVAEISAASIIAKVVRDQEMEELDKLHPQFGFAKHKGYPTKAHFEAIEQHGVIEQHRKS 194 Query: 201 FRPLRN 206 F+P++ Sbjct: 195 FKPVKR 200 >gi|254452091|ref|ZP_05065528.1| ribonuclease HII [Octadecabacter antarcticus 238] gi|198266497|gb|EDY90767.1| ribonuclease HII [Octadecabacter antarcticus 238] Length = 209 Score = 270 bits (692), Expect = 7e-71, Method: Composition-based stats. Identities = 91/201 (45%), Positives = 127/201 (63%), Gaps = 1/201 (0%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 P P F E + + +AG+DEVGRG LAGPV AA+ILDP NIP G+NDSK +S K Sbjct: 9 PSGPDFTFEEDLISRGAICIAGVDEVGRGPLAGPVTAAAVILDPANIPDGLNDSKMLSRK 68 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 KRE L I ++A +SI+ A+ + ID+ NI +A+ A+ A+ L + ALIDG IP Sbjct: 69 KREALEPLIFANAEVSIAHATVEEIDEINILRASHLAMERAIAGLGRV-DHALIDGNMIP 127 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 L A +IKGD+ SLSIAAASI+AK+ RDR+M ++YP YG+D++ GY + H Sbjct: 128 RGLIIPATTIIKGDARSLSIAAASIVAKICRDRIMVGLAQQYPGYGWDTNAGYGSKSHIS 187 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 + G + HR +F+P+ + Sbjct: 188 ALHRLGVTPHHRRSFKPVHYM 208 >gi|313889379|ref|ZP_07823027.1| ribonuclease HII [Streptococcus pseudoporcinus SPIN 20026] gi|313122211|gb|EFR45302.1| ribonuclease HII [Streptococcus pseudoporcinus SPIN 20026] Length = 257 Score = 270 bits (692), Expect = 8e-71, Method: Composition-based stats. Identities = 90/200 (45%), Positives = 122/200 (61%), Gaps = 6/200 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + ++ +AGIDEVGRG LAGPVV A ++L N G+NDSKKI K L Sbjct: 59 FRYERDIYQQGYHCIAGIDEVGRGPLAGPVVAACVVLPKNCKIKGLNDSKKIPKSKHITL 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127 +E+I A+ I I ++ ID NI++AT A+ A+ NL+ VIP LID ++ Sbjct: 119 FEQIKKQAMGIGIGIVDNEMIDTINIYQATKLAMLEAINNLKKVEVIPDYLLIDAMTL-- 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D+ +IKGD+ SLSIAAASIIAKVTRD+LM + YP Y F + GY T KH Q Sbjct: 177 DISIPQMPLIKGDANSLSIAAASIIAKVTRDQLMMSYDQTYPGYDFAQNAGYGTKKHLQG 236 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 +K G + IHR +F P++++ Sbjct: 237 LKNYGVTPIHRKSFEPIKSM 256 >gi|84389778|ref|ZP_00991330.1| ribonuclease HII [Vibrio splendidus 12B01] gi|84376879|gb|EAP93753.1| ribonuclease HII [Vibrio splendidus 12B01] Length = 206 Score = 270 bits (691), Expect = 8e-71, Method: Composition-based stats. Identities = 92/208 (44%), Positives = 124/208 (59%), Gaps = 7/208 (3%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 M E P FE + AG+DEVGRG L G VV AA+ILDPNN G+NDS Sbjct: 1 MAVKEKKELPPFEYP-----QGYQLFAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDS 55 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK+S KKR L+ +I A+ S+ S Q ID+ NI +AT+ A+ A+ L V P AL Sbjct: 56 KKLSEKKRLALFPEIKEKALAWSVGRCSPQEIDEWNILQATMVAMQRAIAGLSVQPDMAL 115 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 IDG +PE LP A++KGD I+AASIIAKV RD+ M K +P++GF H GY Sbjct: 116 IDGNRVPE-LPMDGLAIVKGDLRVAEISAASIIAKVVRDQEMEELDKLHPEFGFAQHKGY 174 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 PT H + I++ G + +R +F+P++ + Sbjct: 175 PTKAHFEAIEKHGVTEHYRKSFKPVKRI 202 >gi|99082490|ref|YP_614644.1| ribonuclease HII [Ruegeria sp. TM1040] gi|122984106|sp|Q1GD84|RNH2_SILST RecName: Full=Ribonuclease HII; Short=RNase HII gi|99038770|gb|ABF65382.1| RNase HII [Ruegeria sp. TM1040] Length = 229 Score = 270 bits (691), Expect = 8e-71, Method: Composition-based stats. Identities = 84/198 (42%), Positives = 125/198 (63%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P LE + + +AG+DEVGRG LAGPV AA++LD ++P G+NDSKK++ ++R Sbjct: 28 PDLSLEEAAQARGYTRIAGVDEVGRGPLAGPVTAAAVVLDLADLPEGLNDSKKLTPRRRA 87 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L +I + A +++ AS + ID HNI +A+ A+ AV L P LIDG IP L Sbjct: 88 ALEPEIMARASYAVAHASVEEIDHHNILRASHLAMERAVAALDPQPDYLLIDGNLIPRAL 147 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A AV+KGD SLSIAAASI+AK RDR+M +++P YG++ + GYP+ +H+ + Sbjct: 148 HIPAEAVVKGDGRSLSIAAASILAKEARDRIMVDLAQQFPGYGWERNAGYPSKQHRDALI 207 Query: 190 EKGPSCIHRLTFRPLRNL 207 + G + HR +F+P+ + Sbjct: 208 KIGVTPHHRRSFKPVHKI 225 >gi|91223487|ref|ZP_01258752.1| ribonuclease HII [Vibrio alginolyticus 12G01] gi|269966265|ref|ZP_06180354.1| ribonuclease HII [Vibrio alginolyticus 40B] gi|91191573|gb|EAS77837.1| ribonuclease HII [Vibrio alginolyticus 12G01] gi|269829180|gb|EEZ83425.1| ribonuclease HII [Vibrio alginolyticus 40B] Length = 211 Score = 270 bits (691), Expect = 8e-71, Method: Composition-based stats. Identities = 93/200 (46%), Positives = 120/200 (60%), Gaps = 7/200 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE + VAG+DEVGRG L G VV AA+ILDPNN G+NDSKK++ KK Sbjct: 13 ELPPFEYP-----QGYQLVAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLTEKK 67 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L +I A+ ++ S + ID+ NI +AT+ A+ AV LQV P LIDG P Sbjct: 68 RMALLPEIKEKALAWAVGRCSPEEIDQLNILQATMVAMQRAVAGLQVQPDLVLIDGNRCP 127 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 E LP A AV+KGD I+AASIIAKV RD+ M K +P +GF H GYPT H + Sbjct: 128 E-LPMDAQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKLHPQFGFAKHKGYPTKAHFE 186 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F+P++ Sbjct: 187 AIEQHGVISEHRKSFKPVKK 206 >gi|95930749|ref|ZP_01313482.1| Ribonuclease H [Desulfuromonas acetoxidans DSM 684] gi|95133229|gb|EAT14895.1| Ribonuclease H [Desulfuromonas acetoxidans DSM 684] Length = 210 Score = 270 bits (691), Expect = 9e-71, Method: Composition-based stats. Identities = 94/207 (45%), Positives = 134/207 (64%), Gaps = 4/207 (1%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 +F + + + P + E +R + VAGIDE GRG LAGPVV AA+IL + G+NDS Sbjct: 5 LFDDDLID-PTY-FERQLRRQGTTLVAGIDEAGRGPLAGPVVAAAVILPEHFDLPGLNDS 62 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK++ KKRE+L+ I A+ + + A + ID+ NI +AT+ ++ AV L+V P+ L Sbjct: 63 KKLTEKKREQLFGPIRQQALAVGVGFAHAEEIDEINILQATVQSMCRAVARLKVTPQHLL 122 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 IDG + P L + KGDS SLS+AAAS+IAKV RDR+M++ + YPDYGF+ H GY Sbjct: 123 IDGIT-PLPLSIDQQTIKKGDSRSLSVAAASVIAKVVRDRMMKVYARHYPDYGFEGHKGY 181 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRN 206 +A+H+Q+I E GP +HR TF +R Sbjct: 182 GSARHRQLIAEHGPCPLHRKTFGGVRE 208 >gi|165975585|ref|YP_001651178.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149400|ref|YP_001967925.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249833|ref|ZP_07336037.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|238687515|sp|B0BS34|RNH2_ACTPJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|238692371|sp|B3GZX1|RNH2_ACTP7 RecName: Full=Ribonuclease HII; Short=RNase HII gi|165875686|gb|ABY68734.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914531|gb|ACE60783.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302651400|gb|EFL81552.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 197 Score = 270 bits (691), Expect = 9e-71, Method: Composition-based stats. Identities = 89/187 (47%), Positives = 119/187 (63%), Gaps = 2/187 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 N +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L E+I + A+ Sbjct: 9 NAHLIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLLLAEEIKAKALC 68 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 S+ A + ID+ NI AT+ A+ AV L + P L+DG IP LP A AVIKGD Sbjct: 69 WSLGRAEPEEIDRLNILHATMLAMQRAVAGLNIQPDFVLVDGNRIPT-LPMPAQAVIKGD 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+ I+AASI+AKV RD+ M +YP+YGF H GYPT H + +++ G + HR + Sbjct: 128 SLVAEISAASILAKVARDQEMAELDVQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKS 187 Query: 201 FRPLRNL 207 F P++ + Sbjct: 188 FAPVKKI 194 >gi|258514489|ref|YP_003190711.1| ribonuclease HII [Desulfotomaculum acetoxidans DSM 771] gi|257778194|gb|ACV62088.1| Ribonuclease H [Desulfotomaculum acetoxidans DSM 771] Length = 268 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 128/197 (64%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +E E+ R K +AG+DE GRG LAGPVV AA+IL N G+NDSKK+ RE L Sbjct: 62 YEQESKYRSKGFGLIAGVDEAGRGPLAGPVVAAAVILPENACLPGLNDSKKLPVSARERL 121 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ ++ AS + I + NI +A+L A+ +V++L+V P L+DG +LP Sbjct: 122 FVAIKPIALSWAVGMASVEEICELNILQASLLAMCRSVDSLKVKPDFVLVDG-PNGLNLP 180 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++++KGD++S SIA+ASI+AKVTRD++M H ++P+YGFD H GYPT +H + + Sbjct: 181 LPQYSLVKGDTLSASIASASILAKVTRDKIMLEYHDEFPEYGFDRHKGYPTVEHLRALTR 240 Query: 191 KGPSCIHRLTFRPLRNL 207 GP IHR F+P+++ Sbjct: 241 YGPCRIHRRDFKPVKDF 257 >gi|254228402|ref|ZP_04921828.1| ribonuclease HII [Vibrio sp. Ex25] gi|262393534|ref|YP_003285388.1| ribonuclease HII [Vibrio sp. Ex25] gi|151938990|gb|EDN57822.1| ribonuclease HII [Vibrio sp. Ex25] gi|262337128|gb|ACY50923.1| ribonuclease HII [Vibrio sp. Ex25] Length = 211 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 92/200 (46%), Positives = 120/200 (60%), Gaps = 7/200 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE + VAG+DEVGRG L G VV AA+ILDPNN G+NDSKK++ KK Sbjct: 13 ELPPFEYP-----QGYQFVAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLTEKK 67 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L +I A+ ++ S + ID+ NI +AT+ A+ AV L+V P LIDG P Sbjct: 68 RMALLPEIKEKALAWAVGRCSPEEIDQLNILQATMVAMQRAVAGLKVQPDLVLIDGNRCP 127 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 E LP A AV+KGD I+AASIIAKV RD+ M K +P +GF H GYPT H + Sbjct: 128 E-LPMDAQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKLHPQFGFAKHKGYPTKAHFE 186 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F+P++ Sbjct: 187 AIEQHGVISEHRKSFKPVKK 206 >gi|307067682|ref|YP_003876648.1| ribonuclease HII [Streptococcus pneumoniae AP200] gi|306409219|gb|ADM84646.1| Ribonuclease HII [Streptococcus pneumoniae AP200] Length = 259 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 125/199 (62%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AGIDEVG G LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGHGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|27365221|ref|NP_760749.1| ribonuclease HII [Vibrio vulnificus CMCP6] gi|37680727|ref|NP_935336.1| ribonuclease HII [Vibrio vulnificus YJ016] gi|320155606|ref|YP_004187985.1| ribonuclease HII [Vibrio vulnificus MO6-24/O] gi|29611847|sp|Q8DBE7|RNH2_VIBVU RecName: Full=Ribonuclease HII; Short=RNase HII gi|39932256|sp|Q7MIH3|RNH2_VIBVY RecName: Full=Ribonuclease HII; Short=RNase HII gi|27361368|gb|AAO10276.1| Ribonuclease HII [Vibrio vulnificus CMCP6] gi|37199476|dbj|BAC95307.1| ribonuclease HII [Vibrio vulnificus YJ016] gi|319930918|gb|ADV85782.1| ribonuclease HII [Vibrio vulnificus MO6-24/O] Length = 207 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 93/207 (44%), Positives = 120/207 (57%), Gaps = 7/207 (3%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 M E P FE + +AG+DEVGRG L G VV AA+ILDPNN G+NDS Sbjct: 1 MAAKETKELPPFEYP-----QGYHCIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDS 55 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK+S KKR L +I A+ ++ S + ID+ NI +AT+ A+ AVE L V P L Sbjct: 56 KKLSEKKRLALLPEIQEKALAWAVGRCSPEEIDQLNILQATMVAMQRAVEGLAVKPDLVL 115 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 IDG P LP + AV+KGD I+AASIIAKV RD+ M K+YP +GF H GY Sbjct: 116 IDGNRCPA-LPMDSQAVVKGDLRVAQISAASIIAKVVRDQEMEELDKQYPQFGFAQHKGY 174 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRN 206 PT H I++ G HR +F+P++ Sbjct: 175 PTKAHFDAIEKHGVIEQHRKSFKPVKK 201 >gi|163801793|ref|ZP_02195690.1| ribonuclease HII [Vibrio sp. AND4] gi|159174301|gb|EDP59105.1| ribonuclease HII [Vibrio sp. AND4] Length = 212 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 89/187 (47%), Positives = 117/187 (62%), Gaps = 2/187 (1%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + +AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKR L +I A+ Sbjct: 21 QGYQLIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEKAL 80 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ S + ID+ NI +AT+ A+ A+E L+V P ALIDG PE LP + AV+KG Sbjct: 81 AWAVGRCSPEEIDELNILQATMVAMQRAIEGLKVQPDLALIDGNRCPE-LPMDSQAVVKG 139 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D I+AASIIAKV RD+ M K YP +GF H GYPT H + I+ G HR Sbjct: 140 DLRVAEISAASIIAKVVRDQEMEELDKHYPQFGFAQHKGYPTKAHFEAIERHGVISQHRK 199 Query: 200 TFRPLRN 206 +F+P++ Sbjct: 200 SFKPVKK 206 >gi|148998411|ref|ZP_01825853.1| ribonuclease HII [Streptococcus pneumoniae SP11-BS70] gi|147755808|gb|EDK62853.1| ribonuclease HII [Streptococcus pneumoniae SP11-BS70] Length = 260 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 125/199 (62%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AGIDEVG G LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGHGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|59712555|ref|YP_205331.1| ribonuclease HII [Vibrio fischeri ES114] gi|73917836|sp|Q5E3F3|RNH2_VIBF1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|59480656|gb|AAW86443.1| ribonuclease HII [Vibrio fischeri ES114] Length = 207 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 94/202 (46%), Positives = 119/202 (58%), Gaps = 7/202 (3%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P FE AG+DEVGRG L G VV AA+ILDPNN G+ DSKK++ K Sbjct: 8 KELPPFEYPE-----GYQLFAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTDK 62 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KRE L+ +I A+ S+ ID+ NI +AT+ A+ A+ L + P ALIDG + Sbjct: 63 KRELLFPEIQEKALAWSLGRCEAHEIDELNILQATMVAMQRAIAGLNITPDFALIDGNKV 122 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 PE LP AV+KGD I+AASIIAKVTRDR M K YP YGF H GYPT H Sbjct: 123 PE-LPMAGLAVVKGDLRVQEISAASIIAKVTRDREMEELDKAYPQYGFAKHKGYPTKAHF 181 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 + I+E G HR +F+P++ + Sbjct: 182 EAIEEHGVISEHRRSFKPVKRV 203 >gi|311068127|ref|YP_003973050.1| ribonuclease HII [Bacillus atrophaeus 1942] gi|310868644|gb|ADP32119.1| ribonuclease HII [Bacillus atrophaeus 1942] Length = 255 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 88/192 (45%), Positives = 121/192 (63%), Gaps = 3/192 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + R K +AGIDEVGRG LAGPVV +A+IL G+ DSKK+S KKREE YE+ Sbjct: 63 ERLARNKGFCIIAGIDEVGRGPLAGPVVASAVILPAECEILGLTDSKKLSEKKREEYYER 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I + A+ + I ID+ NI++A+ A+ AV L P L+D ++P D+P Sbjct: 123 IMNEALGVGIGIIEASVIDEMNIYEASKLAMVKAVRELSEAPDYLLVDAMTLPLDIP--Q 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ S+SIAA + +AKVTRDR+M K YP YGF+ H GY T +H + + GP Sbjct: 181 SSIIKGDAKSVSIAAGACVAKVTRDRMMSEYAKTYPMYGFEKHKGYGTKEHLEALAAYGP 240 Query: 194 SCIHRLTFRPLR 205 + IHR TF P++ Sbjct: 241 TDIHRRTFAPVQ 252 >gi|319947076|ref|ZP_08021310.1| ribonuclease HII [Streptococcus australis ATCC 700641] gi|319747124|gb|EFV99383.1| ribonuclease HII [Streptococcus australis ATCC 700641] Length = 256 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 82/198 (41%), Positives = 125/198 (63%), Gaps = 3/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + + +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI K + + Sbjct: 58 LTYEKELYAQGIQLIAGVDEVGRGPLAGPVVAAAVILPENCKILGLNDSKKIPKSKHQAI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A+ + I +Q ID+ NI++AT A+ A++ L P+ LID + D+P Sbjct: 118 YQAVLDQALSVGIGVKDNQVIDQVNIYEATKLAMLEAIQELDQQPQHLLIDAMKL--DVP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD++M ++YP Y F + GY T KH + +++ Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDQMMAAYDQEYPGYDFGQNAGYGTTKHLEGLEK 235 Query: 191 KGPSCIHRLTFRPLRNLS 208 G + IHR +F P+++++ Sbjct: 236 HGVTPIHRRSFEPIKSMT 253 >gi|49082728|gb|AAT50764.1| PA3642 [synthetic construct] Length = 202 Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats. Identities = 94/184 (51%), Positives = 119/184 (64%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L GPVV AA+ILDP+ G+NDSKK+S +RE L+E+I A+ I Sbjct: 13 LVAGVDEVGRGPLCGPVVTAAVILDPSRPILGLNDSKKLSEARREALFEEIREKALAWCI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI AT+ A+ AVE L IPR ALIDG P+ L V+KGDS Sbjct: 73 ARAEVEEIDRLNILHATMLAMQRAVEGLSAIPRLALIDGNRCPK-LAVPCAPVVKGDSQV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV+RDR M + YP YG H GYPTA H + + GP+ IHR +F P Sbjct: 132 PAIAAASILAKVSRDREMVELDRVYPGYGMAGHKGYPTAVHLEALSRLGPTPIHRRSFAP 191 Query: 204 LRNL 207 +R L Sbjct: 192 VREL 195 >gi|315613173|ref|ZP_07888083.1| ribonuclease HII [Streptococcus sanguinis ATCC 49296] gi|315314735|gb|EFU62777.1| ribonuclease HII [Streptococcus sanguinis ATCC 49296] Length = 259 Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats. Identities = 89/197 (45%), Positives = 122/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGVDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y + A+ I I +Q ID+ NI++AT A+ A+ L P LID + DL Sbjct: 118 YHAVQDQALAIGIGIMDNQVIDQVNIYEATKLAMKEAISQLNPQPDHLLIDAMKL--DLS 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD+ SLSIAAASI+AKVTRD LM+ +YP Y F ++ GY TAKH + +++ Sbjct: 176 ISQTAIIKGDANSLSIAAASIVAKVTRDELMKEYDNQYPGYDFTANAGYGTAKHLEELEK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++ L Sbjct: 236 LGVTPIHRTSFEPVKTL 252 >gi|261253714|ref|ZP_05946287.1| ribonuclease HII [Vibrio orientalis CIP 102891] gi|260937105|gb|EEX93094.1| ribonuclease HII [Vibrio orientalis CIP 102891] Length = 205 Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats. Identities = 90/200 (45%), Positives = 121/200 (60%), Gaps = 7/200 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE + +AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KK Sbjct: 7 ELPPFEYP-----QGYQLIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKK 61 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L +I A+ S+ S + ID+ NI +AT+ A+ A++ L V P LIDG P Sbjct: 62 RLALLPEIKQKALAWSVGRCSPEEIDQLNILQATMVAMQRAIDGLNVKPDLTLIDGNRCP 121 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 E L + AV+KGD I+AASIIAKV RD+ M K++P++GF H GYPT H + Sbjct: 122 E-LSMDSQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKQHPEFGFAKHKGYPTKAHFE 180 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F+P++ Sbjct: 181 AIEQHGVIEQHRKSFKPVKR 200 >gi|260775272|ref|ZP_05884169.1| ribonuclease HII [Vibrio coralliilyticus ATCC BAA-450] gi|260608453|gb|EEX34618.1| ribonuclease HII [Vibrio coralliilyticus ATCC BAA-450] Length = 205 Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats. Identities = 91/201 (45%), Positives = 122/201 (60%), Gaps = 7/201 (3%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P FE + +AG+DEVGRG L G VV AA+ILDPNN G+NDSKK++ K Sbjct: 6 KELPPFEYP-----QGYRLIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLTEK 60 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KR L +I A+ S+ S + ID+ NI +AT+ A+ A+E L+V P ALIDG + Sbjct: 61 KRLALLPEIKEKALAWSVGRCSPEEIDQLNILQATMVAMQRAIEGLEVAPDFALIDGNRV 120 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P+ L A AV+KGD I+AASIIAKV RD+ M K +P +GF H GYPT H Sbjct: 121 PQ-LNMDAQAVVKGDMRVAEISAASIIAKVVRDQEMEELDKLHPQFGFAKHKGYPTKAHF 179 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 + I++ G HR +F+P++ Sbjct: 180 EAIEQHGVIDQHRKSFKPVKK 200 >gi|212639582|ref|YP_002316102.1| ribonuclease HII [Anoxybacillus flavithermus WK1] gi|226736811|sp|B7GGD5|RNH2_ANOFW RecName: Full=Ribonuclease HII; Short=RNase HII gi|212561062|gb|ACJ34117.1| Ribonuclease HII [Anoxybacillus flavithermus WK1] Length = 259 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 90/196 (45%), Positives = 124/196 (63%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + +K + +AG+DEVGRG LAGPVV AA+IL + ++DSKK+S KRE+L Sbjct: 60 LQYEQALYDKGIRYIAGVDEVGRGPLAGPVVAAAVILPKDVYLPHVDDSKKLSETKREQL 119 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ I I S + ID+ NI++AT A+ AV L + P LID IP L Sbjct: 120 FSIIQQMALAIGIGIVSAREIDERNIYEATKKAMMQAVHALAIAPEHLLIDAMHIP--LS 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ S+SIAA+SIIAKVTRDR+M+ +KYP YGF+ H+GY T +H Q I+ Sbjct: 178 IPQTSIIKGDAHSVSIAASSIIAKVTRDRMMKQLGEKYPQYGFEKHMGYGTKEHLQAIER 237 Query: 191 KGPSCIHRLTFRPLRN 206 G HR +F P+R Sbjct: 238 YGVIEEHRRSFAPIRE 253 >gi|310764936|gb|ADP09886.1| Ribonuclease HII [Erwinia sp. Ejp617] Length = 207 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 115/184 (62%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DEVGRG L G VV AA+ILDP+ G+ DSKK+S K+R LY++I A+ S Sbjct: 10 RLIAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLGDSKKLSEKRRLALYDEIKDKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI AT+ A+ AV L + P LIDG P L + AV+KGDS+ Sbjct: 70 LGRAEPEEIDRLNILHATMLAMQRAVAGLHLTPDFVLIDGNRCPA-LAMPSRAVVKGDSL 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M ++YP YGF H GYPTA H + + G + HR +F Sbjct: 129 VPEISAASIMAKVTRDREMCELDQQYPQYGFARHKGYPTAVHMEKLARFGVTPQHRRSFA 188 Query: 203 PLRN 206 P+RN Sbjct: 189 PVRN 192 >gi|146344062|ref|YP_001201918.1| putative ribonuclease HII [Pseudomonas fluorescens SBW25] gi|146187874|emb|CAM96203.1| putative ribonuclease HII [Pseudomonas fluorescens SBW25] Length = 208 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 93/197 (47%), Positives = 121/197 (61%), Gaps = 6/197 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E VAG+DEVGRG L G VV AA+ILDP+ G+NDSKK+S KKR+ L Sbjct: 4 FSFEFA----GSEVVAGVDEVGRGPLCGDVVTAAVILDPSRPIQGLNDSKKLSEKKRDLL 59 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y++I A+ SI AS + ID+ NI +AT+ A+ AV L V P LIDG P LP Sbjct: 60 YDEICEKALAWSIGRASVEEIDQLNILQATMLAMQRAVYGLNVTPTLVLIDGNRCP-ILP 118 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +A A+IKGD + I+AAS++AKV RDR M+ A YP YG H GYP+ +H + + Sbjct: 119 MRAEAIIKGDGLIAEISAASVLAKVVRDREMQSADLLYPGYGLAGHKGYPSPEHLEALTR 178 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P+R + Sbjct: 179 LGVTPIHRKTFAPVRKI 195 >gi|160933523|ref|ZP_02080911.1| hypothetical protein CLOLEP_02369 [Clostridium leptum DSM 753] gi|156867400|gb|EDO60772.1| hypothetical protein CLOLEP_02369 [Clostridium leptum DSM 753] Length = 325 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 89/189 (47%), Positives = 113/189 (59%), Gaps = 2/189 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E K V G+DE GRG LAGPV AA+IL P G+NDSKK++ KKRE L+ Sbjct: 6 YEKEAISKGYANVCGVDEAGRGPLAGPVYAAAVILPPGLEIEGVNDSKKLTEKKREALFP 65 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I A+ I+SAS + IDK NI AT A+ AVE L V ALIDG +P LP Sbjct: 66 EIKEKALAYCIASASEKEIDKLNILNATYLAMARAVEGLPVKADYALIDGNRMPR-LPIP 124 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++KGD +S+SIA ASI+AKVTRD +M ++YP Y F H GY T H +I+ G Sbjct: 125 GETIVKGDGLSMSIACASILAKVTRDHVMMEWDQRYPQYQFAKHKGYGTKLHMDLIRRYG 184 Query: 193 PSCIHRLTF 201 P +HR +F Sbjct: 185 PCELHRQSF 193 >gi|292489213|ref|YP_003532100.1| ribonuclease HII [Erwinia amylovora CFBP1430] gi|292898553|ref|YP_003537922.1| ribonuclease HII [Erwinia amylovora ATCC 49946] gi|291198401|emb|CBJ45508.1| ribonuclease HII [Erwinia amylovora ATCC 49946] gi|291554647|emb|CBA22333.1| Ribonuclease HII [Erwinia amylovora CFBP1430] Length = 211 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 115/184 (62%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DEVGRG L G VV AA+ILDP+ G+ DSKK+S K+R LY++I A+ S Sbjct: 10 RLIAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLGDSKKLSEKRRLALYDEIKDKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI AT+ A+ AV L + P LIDG P L + AV+KGDS+ Sbjct: 70 LGRAEPEEIDRLNILHATMLAMQRAVAGLHLTPDFVLIDGNRCPA-LAMPSRAVVKGDSL 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I AASI+AKVTRDR M ++YP YGF H GYPTA H + + + G + HR +F Sbjct: 129 VQEIGAASIMAKVTRDREMCELDQQYPQYGFARHKGYPTALHMEKLAQFGVTPQHRRSFA 188 Query: 203 PLRN 206 P+RN Sbjct: 189 PVRN 192 >gi|209695837|ref|YP_002263767.1| ribonuclease HII [Aliivibrio salmonicida LFI1238] gi|238056773|sp|B6EJW6|RNH2_ALISL RecName: Full=Ribonuclease HII; Short=RNase HII gi|208009790|emb|CAQ80097.1| ribonuclease HII [Aliivibrio salmonicida LFI1238] Length = 207 Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 92/202 (45%), Positives = 122/202 (60%), Gaps = 7/202 (3%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P FE + AG+DEVGRG L G VV AA+ILDPNN G+ DSKK++ K Sbjct: 8 KELPPFEYP-----QGYQLFAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTEK 62 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KR+ L+ +I A+ S+ ID+ NI +AT+ A+ A+ L+V P ALIDG + Sbjct: 63 KRDLLFPEIQEKALAWSLGRCEAHEIDELNILQATMVAMQRAIAGLKVTPDFALIDGNKV 122 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 PE LP AV+KGD I+AASI+AKVTRDR M + K++P YGF H GYPT H Sbjct: 123 PE-LPMAGLAVVKGDLRVQEISAASILAKVTRDREMEVLDKEFPQYGFAKHKGYPTKAHF 181 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 I+E G HR +F+P++ + Sbjct: 182 AAIEEHGVISEHRRSFKPVKRV 203 >gi|52424478|ref|YP_087615.1| ribonuclease HII [Mannheimia succiniciproducens MBEL55E] gi|81387520|sp|Q65VI0|RNH2_MANSM RecName: Full=Ribonuclease HII; Short=RNase HII gi|52306530|gb|AAU37030.1| RnhB protein [Mannheimia succiniciproducens MBEL55E] Length = 198 Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 91/188 (48%), Positives = 120/188 (63%), Gaps = 2/188 (1%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKRE+L E+I A+ Sbjct: 8 QGFELIAGVDEVGRGPLVGAVVTAAVILDPNNPIDGLTDSKKLSEKKREKLAEEIKQKAL 67 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ A + ID NI +AT+ A+ A++NL++ P LIDG IP+ L A AV+KG Sbjct: 68 AWALGRAEPEEIDALNILQATMLAMQRAIKNLKIQPHFVLIDGNRIPQ-LAIPAQAVVKG 126 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS+ I+AASIIAKV+RD M + K+YP Y F H GYPT H + E G HR Sbjct: 127 DSLVAEISAASIIAKVSRDHEMEVLDKQYPQYEFAKHKGYPTKVHLAKLAEFGVLPQHRR 186 Query: 200 TFRPLRNL 207 +F P+R L Sbjct: 187 SFSPVRKL 194 >gi|268590518|ref|ZP_06124739.1| ribonuclease HII [Providencia rettgeri DSM 1131] gi|291314104|gb|EFE54557.1| ribonuclease HII [Providencia rettgeri DSM 1131] Length = 197 Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 91/183 (49%), Positives = 118/183 (64%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK++ KKRE+L+++I A+ I Sbjct: 10 LIAGVDEVGRGPLVGAVVTAAVILDPNNPIIGLADSKKLTEKKREKLFDEIQEKALCWCI 69 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID NI AT+ A+ AV L +IP LIDG PE LP + AVIKGDS+ Sbjct: 70 GRAEPEEIDNINILHATMLAMQRAVAGLSIIPEYVLIDGNRCPE-LPMPSQAVIKGDSLV 128 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RDR M K +P+YGF H GYPTA H + + + G + HR +F P Sbjct: 129 QEISAASILAKVIRDREMVELDKAFPEYGFAKHKGYPTAYHLEKLAQYGATEFHRKSFAP 188 Query: 204 LRN 206 +R Sbjct: 189 VRR 191 >gi|282889844|ref|ZP_06298383.1| hypothetical protein pah_c004o257 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500418|gb|EFB42698.1| hypothetical protein pah_c004o257 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 232 Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 87/196 (44%), Positives = 121/196 (61%), Gaps = 3/196 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E R + VAG+DE GRG LAGPVV AA IL P G+NDSKK++ +KR +L++ Sbjct: 28 YEEKARRQGYKLVAGVDEAGRGPLAGPVVAAACILPPRFRVPGVNDSKKLTPQKRAQLFQ 87 Query: 74 KITSS--AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +IT+ I + + + ID NI +AT+ A+ AV L P++ L+DG +P + Sbjct: 88 EITTHPKVIYGVGIVATEIIDTINILQATIQAMLDAVNQLSSQPQALLVDGLQLPHPV-I 146 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +I GDS+SL IAAASIIAK TRDRLM +++P YGF H GY T +H ++E Sbjct: 147 PCQKLIHGDSLSLCIAAASIIAKETRDRLMVELDQQWPAYGFAQHKGYGTQQHLDALREH 206 Query: 192 GPSCIHRLTFRPLRNL 207 GP IHR TF P++++ Sbjct: 207 GPCPIHRKTFEPIKSM 222 >gi|306829522|ref|ZP_07462712.1| ribonuclease HII [Streptococcus mitis ATCC 6249] gi|304428608|gb|EFM31698.1| ribonuclease HII [Streptococcus mitis ATCC 6249] Length = 259 Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 89/197 (45%), Positives = 123/197 (62%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKRGLTLIAGVDEVGRGPLAGPVVAAAVILPKNCKIRGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A+ I I +Q ID+ NI++AT A+ A+ L P LID + DL Sbjct: 118 YQAVQDQALAIGIGIMDNQVIDQVNIYEATKLAMKEAISQLTPQPEHLLIDAMKL--DLS 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD+ SLSIAAASI+AKVTRD LM ++YP Y F ++ GY TAKH + +++ Sbjct: 176 IYQTAIIKGDANSLSIAAASIVAKVTRDELMMEYDQQYPGYDFTANAGYGTAKHLEGLEK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++ L Sbjct: 236 LGVTPIHRTSFEPVKTL 252 >gi|327489685|gb|EGF21476.1| ribonuclease HII [Streptococcus sanguinis SK1058] Length = 254 Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 121/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+ Sbjct: 58 LRYEKELYQAGYRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A+ + I ++ ID+ NI++AT A+ A+ L + P LID + D+ Sbjct: 118 YQAVLDKALAVGIGLIDNEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKL--DID 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM K+YP Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 HGVTPIHRKTFEPVKSM 252 >gi|260913166|ref|ZP_05919648.1| ribonuclease HII [Pasteurella dagmatis ATCC 43325] gi|260632753|gb|EEX50922.1| ribonuclease HII [Pasteurella dagmatis ATCC 43325] Length = 197 Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats. Identities = 91/184 (49%), Positives = 118/184 (64%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKR L E+I A+ S+ Sbjct: 11 LIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLNDSKKLSEKKRLALAEEIKQKALAWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AVENL++ P L+DG +P D+ A A++KGDS+ Sbjct: 71 GRAEPEEIDELNILHATMLAMKRAVENLKIQPHLVLVDGNRVP-DVVMPAQAIVKGDSLV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RD M K+YP Y F H GYPT H + + E GP HR +F P Sbjct: 130 AEISAASILAKVARDHEMEELDKQYPQYAFAKHKGYPTKLHLEKLAEFGPLPEHRRSFSP 189 Query: 204 LRNL 207 +R L Sbjct: 190 VRKL 193 >gi|322375250|ref|ZP_08049763.1| ribonuclease HII [Streptococcus sp. C300] gi|321279513|gb|EFX56553.1| ribonuclease HII [Streptococcus sp. C300] Length = 259 Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats. Identities = 89/197 (45%), Positives = 123/197 (62%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGVALIAGVDEVGRGPLAGPVVAAAVILPKNCKINGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y + A+ I I +Q ID+ NI++AT A+ A+ L P LID + DL Sbjct: 118 YHAVQDQALAIGIGIMDNQVIDQVNIYEATKLAMKEAISQLSPQPDHLLIDAMKL--DLS 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD+ SLSIAAASI+AKVTRD LM+ ++YP Y F ++ GY TAKH + +++ Sbjct: 176 ISQTAIIKGDANSLSIAAASIVAKVTRDELMKEYDQQYPGYDFTANAGYGTAKHLEGLEK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++ L Sbjct: 236 LGVTPIHRTSFEPVKTL 252 >gi|329767413|ref|ZP_08258938.1| hypothetical protein HMPREF0428_00635 [Gemella haemolysans M341] gi|328836102|gb|EGF85793.1| hypothetical protein HMPREF0428_00635 [Gemella haemolysans M341] Length = 258 Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats. Identities = 93/208 (44%), Positives = 131/208 (62%), Gaps = 3/208 (1%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 +F E+ F E + GIDEVGRG LAGPVV AA+IL ++ G+NDS Sbjct: 46 LFYKKEYEKKSF-YENKCYNNGCKYICGIDEVGRGPLAGPVVAAAVILKKDSYFEGLNDS 104 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK+S KKREE+YE+I + A+ +I + I+K+NI+ A A+ AVE L+V P L Sbjct: 105 KKLSAKKREEIYEQIKNEAVAYAICEVDNIEIEKYNIYNAARIAMQRAVEKLEVKPDFLL 164 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 ID E+ P F+++KGD S+SIAAAS++AKV RD LM+ KKYP+Y F+++ GY Sbjct: 165 IDAMPF-ENYPIPNFSMVKGDEKSVSIAAASVMAKVYRDNLMKEYAKKYPNYDFENNAGY 223 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 T KH + +KE G + IHR F P++++ Sbjct: 224 GTKKHLEGLKEYGVTPIHRRDFEPIKSM 251 >gi|197286117|ref|YP_002151989.1| ribonuclease HII [Proteus mirabilis HI4320] gi|227357236|ref|ZP_03841593.1| ribonuclease HII [Proteus mirabilis ATCC 29906] gi|238690094|sp|B4F256|RNH2_PROMH RecName: Full=Ribonuclease HII; Short=RNase HII gi|194683604|emb|CAR44495.1| ribonuclease HII [Proteus mirabilis HI4320] gi|227162499|gb|EEI47488.1| ribonuclease HII [Proteus mirabilis ATCC 29906] Length = 196 Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats. Identities = 90/183 (49%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK++ KKR LY++I A+ +I Sbjct: 10 LIAGVDEVGRGPLVGAVVTAAVILDPANPIQGLMDSKKLTEKKRNALYDEIKEKALCWAI 69 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + IDK NI AT+ A+ AV L + P L+DG P +LP + AVIKGDS+ Sbjct: 70 GRAEPEEIDKLNILWATMKAMERAVAGLSITPDMVLVDGNRCP-NLPMASQAVIKGDSLV 128 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M K YPDYGF H GYPTA H + + G + HR +F P Sbjct: 129 QEISAASILAKVTRDREMEQLDKLYPDYGFAKHKGYPTAFHMEKLASLGATPYHRKSFAP 188 Query: 204 LRN 206 ++ Sbjct: 189 VKR 191 >gi|301630622|ref|XP_002944415.1| PREDICTED: lipid-A-disaccharide synthase-like [Xenopus (Silurana) tropicalis] Length = 550 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 85/183 (46%), Positives = 118/183 (64%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82 +AG+DE GRG LAGPVV AA+ILD G+ DSKK+S +RE L+++I + A+ S Sbjct: 369 GLIAGVDEAGRGPLAGPVVAAAVILDAQRPIAGLADSKKLSPARREALFDEIHAHALCCS 428 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ AS + ID+ NI +ATL A+ AV+ L++ P LIDG +P L A A++KGD+ Sbjct: 429 IAEASVEEIDRLNILQATLLAMRRAVQGLRLQPAMVLIDGNRLPV-LDVPAEAIVKGDAR 487 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKV RDR H++YP YGF +H GY TA H ++ G HR TF Sbjct: 488 VPAISAASILAKVQRDRWCMQLHERYPQYGFATHKGYGTAAHIAALRAHGACPEHRRTFA 547 Query: 203 PLR 205 P++ Sbjct: 548 PVK 550 >gi|307249333|ref|ZP_07531327.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251656|ref|ZP_07533561.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307256154|ref|ZP_07537941.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307262716|ref|ZP_07544344.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306858627|gb|EFM90689.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860853|gb|EFM92861.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306865335|gb|EFM97231.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306871971|gb|EFN03687.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 186 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 88/183 (48%), Positives = 118/183 (64%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L E+I + A+ S+ Sbjct: 2 IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLLLAEEIKAKALCWSLG 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L + P L+DG IP LP A AVIKGDS+ Sbjct: 62 RAEPEEIDRLNILHATMLAMQRAVAGLNIQPDFVLVDGNRIPT-LPMPAQAVIKGDSLVA 120 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M +YP+YGF H GYPT H + +++ G + HR +F P+ Sbjct: 121 EISAASILAKVARDQEMAELDVQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKSFAPV 180 Query: 205 RNL 207 + + Sbjct: 181 KKI 183 >gi|116617876|ref|YP_818247.1| RNase HII [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122271923|sp|Q03Y48|RNH2_LEUMM RecName: Full=Ribonuclease HII; Short=RNase HII gi|116096723|gb|ABJ61874.1| RNase HII [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 253 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 92/198 (46%), Positives = 123/198 (62%), Gaps = 3/198 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F++E + +AG+DEVGRG LAGPVV AA+IL + + DSK++S KKR+E Sbjct: 57 RFDIERQYWMQGYDLIAGVDEVGRGPLAGPVVAAAVILPHDFDVLDVIDSKQLSAKKRDE 116 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY+KI AI I + ID+ NI++A A+ AV L IP + LID + DL Sbjct: 117 LYDKIIEKAISIGVGRVEASIIDEINIYEAARVAMTEAVNQLAPIPEALLIDAMRLDLDL 176 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +IKGD+ S SI AASIIAKVTRDRLM KYP YGF+ + GY T +H + IK Sbjct: 177 P--QEFLIKGDARSNSIGAASIIAKVTRDRLMASYGLKYPGYGFEKNAGYGTKEHLEGIK 234 Query: 190 EKGPSCIHRLTFRPLRNL 207 + G + IHR TF P++++ Sbjct: 235 KIGITPIHRKTFAPIKDI 252 >gi|262404580|ref|ZP_06081135.1| ribonuclease HII [Vibrio sp. RC586] gi|262349612|gb|EEY98750.1| ribonuclease HII [Vibrio sp. RC586] Length = 206 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 93/202 (46%), Positives = 122/202 (60%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL A +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S Sbjct: 1 MAKKPSIELPAFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSE 60 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A+ S+ S Q ID+ NI +AT+ A+ AV L V P L+DG Sbjct: 61 KKRLALFPEIQEKALAWSVGRCSPQEIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P+ LP +A AV+KGD I+AASIIAKV RD M K+YP +GF H GYPTA H Sbjct: 121 VPK-LPMEAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAVH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|312173373|emb|CBX81627.1| ribonuclease HII [Erwinia amylovora ATCC BAA-2158] Length = 207 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 115/184 (62%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DEVGRG L G VV AA+ILDP+ G+ DSKK+S K+R LY++I A+ S Sbjct: 10 RLIAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLGDSKKLSEKRRLALYDEIKDKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI AT+ A+ AV L + P LIDG P L + AV+KGDS+ Sbjct: 70 LGRAEPEEIDRLNILHATMLAMQRAVAGLHLTPDFVLIDGNRCPA-LAMPSRAVVKGDSL 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I AASI+AKVTRDR M ++YP YGF H GYPTA H + + + G + HR +F Sbjct: 129 VQEIGAASIMAKVTRDREMCELDQQYPQYGFARHKGYPTAVHMEKLAQFGVTPQHRRSFA 188 Query: 203 PLRN 206 P+RN Sbjct: 189 PVRN 192 >gi|332361192|gb|EGJ38996.1| ribonuclease HII [Streptococcus sanguinis SK1056] Length = 254 Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 121/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+ Sbjct: 58 LRYEKELYQAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A+ + I + + ID+ NI++AT A+ A+ L + P LID + D+ Sbjct: 118 YQAVLDKALAVGIGLMNSEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKL--DID 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM K+YP Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 HGVTPIHRKTFEPVKSM 252 >gi|332366882|gb|EGJ44623.1| ribonuclease HII [Streptococcus sanguinis SK1059] Length = 254 Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 121/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+ Sbjct: 58 LRYEKELYKAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHDEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A+ + I ++ ID+ NI++AT A+ A+ L + P LID + D+ Sbjct: 118 YQAVLDKALAVGIGLIDNEIIDRVNIYEATKLAMKEALSKLCLKPDYLLIDAMKL--DVE 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM K+YP Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 HGVTPIHRKTFEPVKSM 252 >gi|332522627|ref|ZP_08398879.1| ribonuclease HII [Streptococcus porcinus str. Jelinkova 176] gi|332313891|gb|EGJ26876.1| ribonuclease HII [Streptococcus porcinus str. Jelinkova 176] Length = 258 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 88/202 (43%), Positives = 123/202 (60%), Gaps = 6/202 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E V + +AGIDEVGRG LAGPVV A +IL N G+NDSKKI K L Sbjct: 59 LRYERDVYGQGYHYIAGIDEVGRGPLAGPVVAACVILPKNCKIKGLNDSKKIPKSKHNIL 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127 +E+I + A+ I I ++ ID NI++AT A+ A+ +L+ VIP LID ++ Sbjct: 119 FEQIKNQAVGIGIGIVDNKMIDSVNIYQATKLAMLEAINDLKKVEVIPDYLLIDAMTL-- 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D+ ++IKGD+ SLSIAAASI+AKVTRD+LM + YP Y F + GY T KH Sbjct: 177 DISIPQMSLIKGDANSLSIAAASIVAKVTRDQLMMSYDQNYPGYDFAQNAGYGTKKHLNG 236 Query: 188 IKEKGPSCIHRLTFRPLRNLSV 209 +K+ G + IHR +F P++++ + Sbjct: 237 LKKYGVTPIHRKSFEPIKSMLL 258 >gi|218710304|ref|YP_002417925.1| ribonuclease HII [Vibrio splendidus LGP32] gi|254808007|sp|B7VIQ4|RNH2_VIBSL RecName: Full=Ribonuclease HII; Short=RNase HII gi|218323323|emb|CAV19500.1| Ribonuclease HII [Vibrio splendidus LGP32] Length = 206 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 92/208 (44%), Positives = 123/208 (59%), Gaps = 7/208 (3%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 M E P FE + AG+DEVGRG L G VV AA+ILDPNN G+NDS Sbjct: 1 MAVKEKKEFPPFEYP-----QGYQLFAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDS 55 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK+S KKR L +I A+ S+ S Q ID+ NI +AT+ A+ A+ L V P AL Sbjct: 56 KKLSEKKRLALLPEIKEKALAWSVGRCSPQEIDELNILQATMVAMQRAIAGLSVQPDMAL 115 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 IDG +PE LP A++KGD I+AASIIAKV RD+ M K +P++GF H GY Sbjct: 116 IDGNRVPE-LPMAGLAIVKGDLRVAEISAASIIAKVVRDQEMEELDKLHPEFGFAKHKGY 174 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 PT H + I++ G + +R +F+P++ + Sbjct: 175 PTKAHFEAIEKHGVTEHYRKSFKPVKRI 202 >gi|304396658|ref|ZP_07378539.1| Ribonuclease H [Pantoea sp. aB] gi|304356167|gb|EFM20533.1| Ribonuclease H [Pantoea sp. aB] Length = 208 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 88/184 (47%), Positives = 115/184 (62%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK+S K+R LY++I A+ S Sbjct: 10 RLIAGVDEVGRGPLVGAVVTAAVILDPANPITGLADSKKLSEKRRLALYDEIKEKALAWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI AT+ A+ AV L + P LIDG P LP + AV+KGDS+ Sbjct: 70 LGRAEPEEIDQLNILHATMLAMQRAVAGLSIQPDYVLIDGNRCPA-LPMPSQAVVKGDSL 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASIIAKV+RDR M +P YGF H GYPTA H + + + G + HR +F Sbjct: 129 VAEISAASIIAKVSRDREMAELDLLFPQYGFAQHKGYPTALHMEKLTQYGATPHHRRSFA 188 Query: 203 PLRN 206 P+RN Sbjct: 189 PVRN 192 >gi|86146875|ref|ZP_01065194.1| ribonuclease HII [Vibrio sp. MED222] gi|85835327|gb|EAQ53466.1| ribonuclease HII [Vibrio sp. MED222] Length = 206 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 92/208 (44%), Positives = 123/208 (59%), Gaps = 7/208 (3%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 M E P FE + AG+DEVGRG L G VV AA+ILDPNN G+NDS Sbjct: 1 MAVKEKKEFPPFEYP-----QGYQLFAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDS 55 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK+S KKR L +I A+ S+ S Q ID+ NI +AT+ A+ A+ L V P AL Sbjct: 56 KKLSEKKRLALLPEIKEKALAWSVGRCSPQEIDELNILQATMVAMQRAIAGLSVQPDIAL 115 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 IDG +PE LP A++KGD I+AASIIAKV RD+ M K +P++GF H GY Sbjct: 116 IDGNRVPE-LPMAGLAIVKGDLRVAEISAASIIAKVVRDQEMEELDKLHPEFGFAKHKGY 174 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 PT H + I++ G + +R +F+P++ + Sbjct: 175 PTKAHFEAIEKHGVTEHYRKSFKPVKRI 202 >gi|187735061|ref|YP_001877173.1| Ribonuclease H [Akkermansia muciniphila ATCC BAA-835] gi|187425113|gb|ACD04392.1| Ribonuclease H [Akkermansia muciniphila ATCC BAA-835] Length = 214 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 86/203 (42%), Positives = 117/203 (57%), Gaps = 4/203 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKR 68 P E R VAG+DE GRG LAGPVV A+IL G+NDSK+++ KR Sbjct: 7 PDMSFEMEARASGFLCVAGVDEAGRGPLAGPVVAGAVILPVLAEELTGLNDSKQLTAAKR 66 Query: 69 EELYEKI--TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 E L+ + A+ S+ AS + ID+ NI +AT A+ AVE L + L+DG + Sbjct: 67 ERLFLALLECEQAVCSVGVASVEEIDRFNILRATHLAMARAVEGLALRADFCLVDGLPV- 125 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + LP A++KGD SLSIAAAS++AKVTRDR+M A YP YGF H GY T H + Sbjct: 126 KGLPVPHRAIVKGDGRSLSIAAASVLAKVTRDRMMMEADASYPQYGFAKHKGYGTKAHME 185 Query: 187 VIKEKGPSCIHRLTFRPLRNLSV 209 ++ GP +HR +F P+ + + Sbjct: 186 ALRRHGPCPLHRRSFAPVSQMEL 208 >gi|330719081|ref|ZP_08313681.1| ribonuclease HII [Leuconostoc fallax KCTC 3537] Length = 254 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 90/200 (45%), Positives = 122/200 (61%), Gaps = 3/200 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F++E K + VAGIDEVGRG LAGPVV AA+IL + + DSK++S KR Sbjct: 56 QKRFDIEKQYWAKGLVNVAGIDEVGRGPLAGPVVSAAVILPHDFNQVDVIDSKQLSADKR 115 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + LY+ I + A+ I I + ID NI++A A+ AV+ L + LID + Sbjct: 116 DRLYDVIMAEALAIGIGQVDAETIDAINIYQAARLAMTQAVQQLSIPVDGLLIDAMQLDL 175 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 DLP ++IKGD+ S SI AASIIAKVTRDRLM K+YP YGF + GY T +H Sbjct: 176 DLP--QESLIKGDARSNSIGAASIIAKVTRDRLMAEYGKRYPAYGFQHNAGYGTKEHLVA 233 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 I+E G + +HR TF P++N+ Sbjct: 234 IEEYGITPLHRKTFAPIKNM 253 >gi|319403915|emb|CBI77503.1| Ribonuclease HII [Bartonella rochalimae ATCC BAA-1498] Length = 223 Score = 267 bits (684), Expect = 5e-70, Method: Composition-based stats. Identities = 107/208 (51%), Positives = 144/208 (69%), Gaps = 4/208 (1%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 MF +P +P+F E +++K + +AG+DEVGRG LAGPVV AA+ILD + IP G+NDS Sbjct: 12 MF--DVPFQPNFSYELDLQKKGFFYIAGVDEVGRGPLAGPVVTAAVILDKDRIPEGLNDS 69 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK+S ++R LY +I +A+ IS++S + IDK NI KATL+A+ H + L + AL Sbjct: 70 KKLSSQQRNRLYYEILRNALAISVASLCARTIDKSNIRKATLEAMRHCITGLAISAHYAL 129 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 IDGR IP DLPC A A+IKGD S+SIAAASIIAKV RDR+M+ A + Y +YG + HVGY Sbjct: 130 IDGRDIPFDLPCPAVALIKGDQSSVSIAAASIIAKVIRDRMMQYAGRIYQNYGLEKHVGY 189 Query: 180 PTAKHQQVIKEKGPS-CIHRLTFRPLRN 206 T H+ I + GP +HR +F PL+ Sbjct: 190 GTVAHRAAIDKYGPIVRLHRYSFSPLKE 217 >gi|330445159|ref|ZP_08308811.1| ribonuclease HII family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489350|dbj|GAA03308.1| ribonuclease HII family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 203 Score = 267 bits (684), Expect = 5e-70, Method: Composition-based stats. Identities = 90/196 (45%), Positives = 120/196 (61%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E V + +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK++ KKR L+ Sbjct: 6 EFEPFVYPQ-ANCIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTEKKRNLLF 64 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I A+ S+ ID+ NI +AT+ A+ AV L + P LIDG +PE LP Sbjct: 65 DEIKEKALSWSLGRCEADEIDELNILQATMVAMQRAVAGLHIQPDFVLIDGNKVPE-LPM 123 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A AV+KGD I+AASIIAKVTRDR M +YP YGF H GYPT H + +++ Sbjct: 124 AAQAVVKGDLRVAEISAASIIAKVTRDREMEALDAEYPQYGFAKHKGYPTKAHFEALEQH 183 Query: 192 GPSCIHRLTFRPLRNL 207 G HR +F+P++ + Sbjct: 184 GAIEQHRKSFKPVKRI 199 >gi|261211364|ref|ZP_05925652.1| ribonuclease HII [Vibrio sp. RC341] gi|260839319|gb|EEX65945.1| ribonuclease HII [Vibrio sp. RC341] Length = 206 Score = 267 bits (684), Expect = 6e-70, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 121/202 (59%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIEGLNDSKKLSE 60 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A+ ++ S Q ID+ NI +AT+ A+ AV L V P L+DG Sbjct: 61 KKRLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P+ LP +A AV+KGD I+AASIIAKV RD M K+YP +GF H GYPTA H Sbjct: 121 VPQ-LPMEAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAVH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|229541107|ref|ZP_04430167.1| Ribonuclease H [Bacillus coagulans 36D1] gi|229325527|gb|EEN91202.1| Ribonuclease H [Bacillus coagulans 36D1] Length = 255 Score = 267 bits (684), Expect = 6e-70, Method: Composition-based stats. Identities = 84/194 (43%), Positives = 120/194 (61%), Gaps = 2/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E +R +AGIDE GRG LAGPVV AA+IL + G+NDSK++S K+RE + Sbjct: 58 RFEDALRSHGCRLIAGIDEAGRGPLAGPVVAAAVILPEDFYLPGLNDSKQLSEKQREAFF 117 Query: 73 EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I ++ + AS + ID+ NI++A A+ A+ +L P LID IP P Sbjct: 118 ARIQEETLVGVGFASAEEIDRMNIYEAAKKAMLAALGHLPAAPDHLLIDAMEIPASYP-- 175 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +++KGD+ S+SIAAAS++AKVTRDR M+ +KYP YGF H GY T KH + + + G Sbjct: 176 QTSIVKGDAKSISIAAASVVAKVTRDRYMQEMDEKYPGYGFAIHKGYGTKKHLEALMKLG 235 Query: 193 PSCIHRLTFRPLRN 206 P IHR +F P+++ Sbjct: 236 PCPIHRKSFAPIKD 249 >gi|254511405|ref|ZP_05123472.1| ribonuclease HII [Rhodobacteraceae bacterium KLH11] gi|221535116|gb|EEE38104.1| ribonuclease HII [Rhodobacteraceae bacterium KLH11] Length = 205 Score = 267 bits (684), Expect = 6e-70, Method: Composition-based stats. Identities = 87/198 (43%), Positives = 133/198 (67%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P++ELE + + VAG+DEVGRG LAGPVV AA+IL+P++ P G+NDSKK++ K+R Sbjct: 4 PNYELEQALLARGYVRVAGVDEVGRGPLAGPVVAAAVILNPDDFPEGLNDSKKLTAKRRG 63 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L + + A ++++ AS ID+HNI +A+ A+ AV L P LIDG IP L Sbjct: 64 ALDLALRAQASVAVAQASVAEIDEHNILRASHLAMVRAVAALNPAPDFLLIDGNMIPRGL 123 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + AV++GD+ S+SIA ASI+AK RDRLM +++P YG++++ GYPT +H++ ++ Sbjct: 124 KIPSQAVVRGDARSVSIAGASIVAKNWRDRLMVDLAQQHPGYGWEANAGYPTKQHREALR 183 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + HR +F+P+ N+ Sbjct: 184 NLGVTPHHRRSFKPVHNI 201 >gi|291616360|ref|YP_003519102.1| RnhB [Pantoea ananatis LMG 20103] gi|291151390|gb|ADD75974.1| RnhB [Pantoea ananatis LMG 20103] Length = 215 Score = 267 bits (684), Expect = 6e-70, Method: Composition-based stats. Identities = 88/184 (47%), Positives = 113/184 (61%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK+S K+R L+++I A+ S Sbjct: 17 GCIAGVDEVGRGPLVGAVVTAAVILDPANPVPGLADSKKLSEKRRLALFDQIKEKALAWS 76 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID NI AT+ A+ AV L + P LIDG P LP + AV+KGDS+ Sbjct: 77 LGRAEPDEIDNLNILHATMLAMQRAVAGLSITPDFVLIDGNRCPA-LPMPSLAVVKGDSL 135 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASIIAKVTRDR M +P YGF H GYPTA H + + + G + HR +F Sbjct: 136 VAEISAASIIAKVTRDREMAELDLLFPQYGFAQHKGYPTALHMEKLTQYGATPHHRRSFA 195 Query: 203 PLRN 206 P+RN Sbjct: 196 PVRN 199 >gi|269101953|ref|ZP_06154650.1| ribonuclease HII [Photobacterium damselae subsp. damselae CIP 102761] gi|268161851|gb|EEZ40347.1| ribonuclease HII [Photobacterium damselae subsp. damselae CIP 102761] Length = 201 Score = 267 bits (684), Expect = 6e-70, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 114/184 (61%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L+++I A+ S+ Sbjct: 15 LIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLSEKKRNALFDEIKEKALAWSL 74 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 ID+ NI +AT+ A+ AV L + P LIDG PE LP A AV+KGD Sbjct: 75 GRCEADEIDELNILQATMVAMQRAVAGLNITPDFVLIDGNKTPE-LPMAAQAVVKGDLRV 133 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M +YP +GF H GYPT H ++E G HR +F+P Sbjct: 134 AEISAASILAKVTRDREMDELDAQYPQFGFAKHKGYPTKAHFAALEEHGVIEQHRKSFKP 193 Query: 204 LRNL 207 ++ + Sbjct: 194 VKRI 197 >gi|150395676|ref|YP_001326143.1| ribonuclease HII [Sinorhizobium medicae WSM419] gi|166226656|sp|A6U6M8|RNH2_SINMW RecName: Full=Ribonuclease HII; Short=RNase HII gi|150027191|gb|ABR59308.1| Ribonuclease H [Sinorhizobium medicae WSM419] Length = 216 Score = 267 bits (684), Expect = 6e-70, Method: Composition-based stats. Identities = 105/201 (52%), Positives = 139/201 (69%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 P P F E + +WPVAG DE GRG LAGPVV AA+IL+P+ IP G+NDSK ++ + Sbjct: 16 PPVPDFAFERAAQRDGLWPVAGADEAGRGPLAGPVVAAAVILNPDAIPTGLNDSKLLTAE 75 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 +RE L+E+I ++A +SI+S+S ID +I KA+LDA+ AV L+V R L+DGR +P Sbjct: 76 QRETLFEEILATATVSIASSSSARIDTTDILKASLDAMRRAVHGLEVAARIVLVDGRDVP 135 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 L C A A++KGDS S+SIAAASI+AKVTRDR+M A +P YGF H GY T KH+ Sbjct: 136 PGLSCHAKAIVKGDSRSVSIAAASIVAKVTRDRMMARADATFPLYGFAHHAGYATVKHRT 195 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I+ GP +HR++FRP R L Sbjct: 196 AIESHGPCSLHRMSFRPFRQL 216 >gi|304393450|ref|ZP_07375378.1| ribonuclease HII [Ahrensia sp. R2A130] gi|303294457|gb|EFL88829.1| ribonuclease HII [Ahrensia sp. R2A130] Length = 208 Score = 267 bits (684), Expect = 7e-70, Method: Composition-based stats. Identities = 98/198 (49%), Positives = 136/198 (68%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P F LE + K + V G+DE GRG LAGPV+ AA+ILDP+NIP G+NDSK ++ K+R Sbjct: 5 QPDFTLETLALSKGIKNVCGVDEAGRGPLAGPVIAAAVILDPDNIPSGLNDSKALTEKRR 64 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 EL++ I +++ ++ ++ + ID NI A+L A+ +V L V ALIDG ++P + Sbjct: 65 SELFDAILATSQVAFATVAAGRIDAMNIRAASLYAMEQSVRALPVCANHALIDGNALPPN 124 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 +PC A A++KGD+ SLSIAAASIIAKV RDR+M A +P YGF H GYPTA H+ + Sbjct: 125 MPCSAEAIVKGDARSLSIAAASIIAKVMRDRIMVRADTLWPQYGFSGHKGYPTAAHRDAL 184 Query: 189 KEKGPSCIHRLTFRPLRN 206 GP IHR++FRP+RN Sbjct: 185 ARLGPCQIHRMSFRPVRN 202 >gi|229524248|ref|ZP_04413653.1| ribonuclease HII [Vibrio cholerae bv. albensis VL426] gi|229337829|gb|EEO02846.1| ribonuclease HII [Vibrio cholerae bv. albensis VL426] Length = 206 Score = 267 bits (684), Expect = 7e-70, Method: Composition-based stats. Identities = 93/202 (46%), Positives = 123/202 (60%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSE 60 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A+ S+ S Q ID+ NI +AT+ A+ AV L++ P LIDG Sbjct: 61 KKRLALFPEIQEKALAWSVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IP+ LP +A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 121 IPK-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|209886088|ref|YP_002289945.1| ribonuclease HII (RNase HII) [Oligotropha carboxidovorans OM5] gi|209874284|gb|ACI94080.1| ribonuclease HII (RNase HII) [Oligotropha carboxidovorans OM5] Length = 259 Score = 267 bits (683), Expect = 7e-70, Method: Composition-based stats. Identities = 95/200 (47%), Positives = 134/200 (67%), Gaps = 1/200 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 ++ RP F E + ++ +WPVAG DEVGRG LAGPVV AA+ILDP+ IP GINDSK+++ Sbjct: 24 TVVTRPSFRRERALMKQGIWPVAGCDEVGRGPLAGPVVAAAVILDPDRIPKGINDSKRLT 83 Query: 65 HKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 + RE L+E+I ++A +S+++A ID+ NI +A+L A+ AV+ L PR +DGR Sbjct: 84 AEAREALFEEICATAFVSVAAAPPWRIDRDNILRASLWALTRAVKGLPQPPRHVFVDGRD 143 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + C+ AVI GD + SI AASI+AKVTRDRLM ++YP YGF+SH+GY +H Sbjct: 144 -KIAVSCECEAVIGGDGLLFSIGAASIVAKVTRDRLMCALARQYPQYGFESHMGYAVPQH 202 Query: 185 QQVIKEKGPSCIHRLTFRPL 204 ++ GP+ HR F P+ Sbjct: 203 LAALERHGPTPHHRRHFAPV 222 >gi|46143677|ref|ZP_00134750.2| COG0164: Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207617|ref|YP_001052842.1| ribonuclease HII [Actinobacillus pleuropneumoniae L20] gi|303251953|ref|ZP_07338124.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|166225164|sp|A3MYK1|RNH2_ACTP2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|126096409|gb|ABN73237.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|302649383|gb|EFL79568.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 197 Score = 267 bits (683), Expect = 8e-70, Method: Composition-based stats. Identities = 88/187 (47%), Positives = 118/187 (63%), Gaps = 2/187 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 N +AG+DEVGRG L G VV AA+IL PNN G+ DSKK+S KKR L E+I + A+ Sbjct: 9 NAHLIAGVDEVGRGPLVGAVVTAAVILAPNNPIEGLADSKKLSEKKRLLLAEEIKAKALC 68 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 S+ A + ID+ NI AT+ A+ AV L + P L+DG IP LP A AVIKGD Sbjct: 69 WSLGRAEPEEIDRLNILHATMLAMQRAVAGLNIQPDFVLVDGNRIPT-LPMPAQAVIKGD 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+ I+AASI+AKV RD+ M +YP+YGF H GYPT H + +++ G + HR + Sbjct: 128 SLVAEISAASILAKVARDQEMAELDVQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKS 187 Query: 201 FRPLRNL 207 F P++ + Sbjct: 188 FAPVKKI 194 >gi|308185754|ref|YP_003929885.1| Ribonuclease HII [Pantoea vagans C9-1] gi|308056264|gb|ADO08436.1| Ribonuclease HII [Pantoea vagans C9-1] Length = 208 Score = 267 bits (683), Expect = 8e-70, Method: Composition-based stats. Identities = 88/184 (47%), Positives = 115/184 (62%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK+S K+R LY++I A+ S Sbjct: 10 RLIAGVDEVGRGPLVGAVVTAAVILDPANPITGLADSKKLSEKRRLSLYDEIKEKALAWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI AT+ A+ AV L + P LIDG P LP + AV+KGDS+ Sbjct: 70 LGRAEPEEIDQLNILHATMLAMQRAVAGLSIQPDYVLIDGNRCPA-LPMPSQAVVKGDSL 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASIIAKV+RDR M +P YGF H GYPTA H + + + G + HR +F Sbjct: 129 VAEISAASIIAKVSRDREMAELDLLFPQYGFAQHKGYPTALHMEKLTQYGATPHHRRSFA 188 Query: 203 PLRN 206 P+RN Sbjct: 189 PVRN 192 >gi|262166323|ref|ZP_06034060.1| ribonuclease HII [Vibrio mimicus VM223] gi|262026039|gb|EEY44707.1| ribonuclease HII [Vibrio mimicus VM223] Length = 206 Score = 267 bits (683), Expect = 8e-70, Method: Composition-based stats. Identities = 92/202 (45%), Positives = 119/202 (58%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSE 60 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A+ S+ S Q ID+ NI +AT+ A+ AV L V P L+DG Sbjct: 61 KKRLALFPEIQEKALAWSVGRCSPQEIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P LP A AV+KGD I+AASIIAKV RD M K+YP +GF H GYPTA H Sbjct: 121 VPT-LPMDAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAAH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|237808842|ref|YP_002893282.1| Ribonuclease H [Tolumonas auensis DSM 9187] gi|237501103|gb|ACQ93696.1| Ribonuclease H [Tolumonas auensis DSM 9187] Length = 197 Score = 267 bits (683), Expect = 8e-70, Method: Composition-based stats. Identities = 89/184 (48%), Positives = 115/184 (62%), Gaps = 2/184 (1%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81 +AG+DEVGRG L G VV AA+ILDP G+NDSKK+S KKRE L++ I + + Sbjct: 9 YQLIAGVDEVGRGPLIGDVVTAAVILDPARPITGLNDSKKLSEKKREALFDIIRENVLAF 68 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 +I S ID+ NI +AT+ A+ AV L V P LIDG P L + AV+KGDS Sbjct: 69 AIGRCSAAEIDQFNILQATMKAMQRAVAGLSVQPEFVLIDGNRCPA-LSMPSQAVVKGDS 127 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + I+AASI+AKVTRDR M + YP YGF H GYPTA+H + E G IHR +F Sbjct: 128 LVAEISAASILAKVTRDREMAELDQLYPQYGFAQHKGYPTAQHLAALAEHGALAIHRRSF 187 Query: 202 RPLR 205 +P++ Sbjct: 188 KPVK 191 >gi|148981147|ref|ZP_01816309.1| ribonuclease HII [Vibrionales bacterium SWAT-3] gi|145960974|gb|EDK26299.1| ribonuclease HII [Vibrionales bacterium SWAT-3] Length = 206 Score = 267 bits (683), Expect = 8e-70, Method: Composition-based stats. Identities = 93/208 (44%), Positives = 123/208 (59%), Gaps = 7/208 (3%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 M E P FE + AG+DEVGRG L G VV AA+ILDPNN G+NDS Sbjct: 1 MAVKEKKELPPFEYP-----QGYQLFAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDS 55 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK+S KKR L +I A+ S+ S Q ID+ NI +AT+ A+ A+ L V P AL Sbjct: 56 KKLSEKKRLALLPEIKEKALAWSVGRCSPQEIDELNILQATMVAMQRAIAGLSVQPDMAL 115 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 IDG +PE LP AV+KGD I+AASIIAKV RD+ M K +P++GF H GY Sbjct: 116 IDGNRVPE-LPMAGIAVVKGDLRVAEISAASIIAKVVRDQEMEELDKLHPEFGFAKHKGY 174 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 PT H + I++ G + +R +F+P++ + Sbjct: 175 PTKAHFEAIEKHGVTEHYRKSFKPVKRI 202 >gi|322376562|ref|ZP_08051055.1| ribonuclease HII [Streptococcus sp. M334] gi|321282369|gb|EFX59376.1| ribonuclease HII [Streptococcus sp. M334] Length = 259 Score = 267 bits (683), Expect = 9e-70, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 125/197 (63%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AG+DEVGRG LAGPVV AA+IL N +NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGVDEVGRGPLAGPVVSAAVILPQNCKIKDLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A+ I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIMDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + +++ Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKDYDQQFPGYDFTANAGYGTAKHLEGLEK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P+++L Sbjct: 236 LGVTPIHRTSFEPVKSL 252 >gi|260588681|ref|ZP_05854594.1| ribonuclease HII [Blautia hansenii DSM 20583] gi|260541156|gb|EEX21725.1| ribonuclease HII [Blautia hansenii DSM 20583] Length = 256 Score = 267 bits (683), Expect = 9e-70, Method: Composition-based stats. Identities = 89/190 (46%), Positives = 122/190 (64%), Gaps = 4/190 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + GIDEVGRG AGPVV A+IL P+ +NDSK++S K RE+LY Sbjct: 60 EFEREYEHLGY--ICGIDEVGRGPFAGPVVAGAVILPPDCEILYVNDSKQLSEKMREQLY 117 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I A+ +++ AS Q ID+ NI +AT +A+ AV L V P+ L D +IP+ + Sbjct: 118 DEIMEKAVSVAVGYASPQRIDEINILQATYEAMREAVSKLDVTPQILLNDAVTIPQ-ITI 176 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S+SIAAASI+AKVTRDRLMR K P+YGF S+ GY + +H + IK+ Sbjct: 177 PQVPIIKGDAKSISIAAASIVAKVTRDRLMREYDKIMPEYGFASNKGYGSKEHIEAIKKY 236 Query: 192 GPSCIHRLTF 201 GP+ IHR +F Sbjct: 237 GPTPIHRRSF 246 >gi|52080208|ref|YP_078999.1| ribonuclease HII [Bacillus licheniformis ATCC 14580] gi|52785585|ref|YP_091414.1| ribonuclease HII [Bacillus licheniformis ATCC 14580] gi|319646013|ref|ZP_08000243.1| ribonuclease HII [Bacillus sp. BT1B_CT2] gi|73917597|sp|Q65JP3|RNH2_BACLD RecName: Full=Ribonuclease HII; Short=RNase HII gi|52003419|gb|AAU23361.1| ribonuclease HII [Bacillus licheniformis ATCC 14580] gi|52348087|gb|AAU40721.1| RnhB [Bacillus licheniformis ATCC 14580] gi|317391763|gb|EFV72560.1| ribonuclease HII [Bacillus sp. BT1B_CT2] Length = 255 Score = 266 bits (682), Expect = 9e-70, Method: Composition-based stats. Identities = 87/194 (44%), Positives = 118/194 (60%), Gaps = 3/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E +R + +AGIDE GRG LAGPVV AA+IL + G+ DSKK+S +KRE+ Y Sbjct: 61 SFERSLRARGYQYIAGIDEAGRGPLAGPVVAAAVILKEDCEILGLTDSKKLSKQKREDYY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A + + A ID+ NI++A+ A+ AV+ L V P LID S+ D Sbjct: 121 SYIMEEAAAVGVGIADAHEIDELNIYEASKAAMLKAVQALDVAPDYLLIDAMSLAVD--T 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++IKGD+ S SIAA + IAKVTRDRLM +KYP YGF+ H GY T +H + + Sbjct: 179 EQSSIIKGDAKSASIAAGACIAKVTRDRLMDEYAEKYPLYGFEKHKGYGTKEHLNALAKY 238 Query: 192 GPSCIHRLTFRPLR 205 GPS IHR +F P++ Sbjct: 239 GPSPIHRRSFAPVK 252 >gi|291484157|dbj|BAI85232.1| ribonuclease HII [Bacillus subtilis subsp. natto BEST195] Length = 255 Score = 266 bits (682), Expect = 9e-70, Method: Composition-based stats. Identities = 83/196 (42%), Positives = 120/196 (61%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + R K +AG+DEVGRG LAGPVV +A+IL G+ DSKK+S KKREE Y Sbjct: 61 SYERLARNKGFRLIAGVDEVGRGPLAGPVVASAVILPEECEILGLTDSKKLSEKKREEYY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I A+ + I ID+ NI++A+ A+ A+++L P L+D ++P L Sbjct: 121 ELIMKEALAVGIGIVEATVIDEINIYEASKMAMVKAIQDLSGTPDYLLVDAMTLP--LDT 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAA + IAKVTRDR+M + YP YGF+ + GY T +H + + Sbjct: 179 AQASIIKGDAKSVSIAAGACIAKVTRDRMMSAYAETYPMYGFEKNKGYGTKEHLEALAAY 238 Query: 192 GPSCIHRLTFRPLRNL 207 GP+ +HR TF P+++ Sbjct: 239 GPTELHRKTFAPVQSF 254 >gi|149192146|ref|ZP_01870367.1| ribonuclease HII [Vibrio shilonii AK1] gi|148834016|gb|EDL51032.1| ribonuclease HII [Vibrio shilonii AK1] Length = 208 Score = 266 bits (682), Expect = 9e-70, Method: Composition-based stats. Identities = 91/200 (45%), Positives = 120/200 (60%), Gaps = 7/200 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P F+ + VAG+DEVGRG L G +V AA+ILDPNN G+NDSKK+S KK Sbjct: 9 ELPPFDYP-----QGYSLVAGVDEVGRGPLVGDIVTAAVILDPNNPIEGLNDSKKLSEKK 63 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R LY +I A+ ++ S ID+ NI +AT+ A+ AV LQV P LIDG P Sbjct: 64 RLALYPEIKEKALAWAVGRCSPTEIDELNILQATMVAMQRAVAGLQVQPDMVLIDGNRTP 123 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP A AV+KGD I+AASIIAKV RD+ M +++P +GF H GYPT H + Sbjct: 124 T-LPMDAQAVVKGDLRVAEISAASIIAKVVRDQEMEELDQQHPQFGFAKHKGYPTKAHFE 182 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F+P++ Sbjct: 183 AIEQHGVIAEHRKSFKPVKR 202 >gi|68249618|ref|YP_248730.1| ribonuclease HII [Haemophilus influenzae 86-028NP] gi|81335953|sp|Q4QLM7|RNH2_HAEI8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|68057817|gb|AAX88070.1| ribonuclease HII [Haemophilus influenzae 86-028NP] Length = 197 Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 86/187 (45%), Positives = 119/187 (63%), Gaps = 1/187 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L E+I A+ Sbjct: 6 QGYELIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLALAEEIKEKAL 65 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+KG Sbjct: 66 AWALGRAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLAIPAQAVVKG 125 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D++ I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR Sbjct: 126 DNLVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRR 185 Query: 200 TFRPLRN 206 +F P++ Sbjct: 186 SFAPVKK 192 >gi|16078669|ref|NP_389488.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. 168] gi|221309481|ref|ZP_03591328.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. 168] gi|221313806|ref|ZP_03595611.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318730|ref|ZP_03600024.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. JH642] gi|221323001|ref|ZP_03604295.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. SMY] gi|6685901|sp|O31744|RNH2_BACSU RecName: Full=Ribonuclease HII; Short=RNase HII gi|2633978|emb|CAB13479.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. 168] Length = 255 Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 83/196 (42%), Positives = 120/196 (61%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + R K +AG+DEVGRG LAGPVV +A+IL G+ DSKK+S KKREE Y Sbjct: 61 SYERLARNKGFRLIAGVDEVGRGPLAGPVVASAVILPEECEILGLTDSKKLSEKKREEYY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I A+ + I ID+ NI++A+ A+ A+++L P L+D ++P L Sbjct: 121 ELIMKEALAVGIGIVEATVIDEINIYEASKMAMVKAIQDLSDTPDYLLVDAMTLP--LDT 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAA + IAKVTRDR+M + YP YGF+ + GY T +H + + Sbjct: 179 AQASIIKGDAKSVSIAAGACIAKVTRDRMMSAYAETYPMYGFEKNKGYGTKEHLEALAAY 238 Query: 192 GPSCIHRLTFRPLRNL 207 GP+ +HR TF P+++ Sbjct: 239 GPTELHRKTFAPVQSF 254 >gi|90580985|ref|ZP_01236786.1| ribonuclease HII [Vibrio angustum S14] gi|90437863|gb|EAS63053.1| ribonuclease HII [Vibrio angustum S14] Length = 203 Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 92/196 (46%), Positives = 121/196 (61%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 ELE V + +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK++ KKR L+ Sbjct: 6 ELEPFVYPQ-ATCIAGVDEVGRGPLVGAVVTAAVILDPNNPIKGLTDSKKLTEKKRNLLF 64 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I A+ S+ ID NI +AT+ A+ AV L V P LIDG +PE LP Sbjct: 65 DEIKEKALSWSLGRCEADEIDNLNILQATMVAMQRAVAGLSVQPDYVLIDGNKVPE-LPM 123 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A AV+KGD I+AASIIAKVTRDR M I ++P YGF H GYPT H + +++ Sbjct: 124 AAQAVVKGDLRVAEISAASIIAKVTRDREMEILDAEFPQYGFAKHKGYPTKAHFEALEQY 183 Query: 192 GPSCIHRLTFRPLRNL 207 G HR +F+P++ + Sbjct: 184 GAIEQHRKSFKPVKRV 199 >gi|268318031|ref|YP_003291750.1| Ribonuclease H [Rhodothermus marinus DSM 4252] gi|262335565|gb|ACY49362.1| Ribonuclease H [Rhodothermus marinus DSM 4252] Length = 198 Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 90/191 (47%), Positives = 121/191 (63%), Gaps = 1/191 (0%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E ++ VAG+DEVGRG LAGPVV AA+IL P+ G+ DSK++ + RE+L Sbjct: 5 RPEVRCWQQGYRWVAGVDEVGRGCLAGPVVAAAVILPPHVQLDGVRDSKQLRPEVREKLA 64 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E+I + A+ I I + + ID+ NI A L+A+ AV NL++ P LIDG D PC Sbjct: 65 EQIRAQALAIGIGMCTPEEIDRLNILNAALEAMRRAVANLELTPDYLLIDGNRCFSDPPC 124 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A ++KGD SL IAAASIIAK TRD LM+ H+++P YG+D +VGYPT H + + Sbjct: 125 PAKPIVKGDQQSLLIAAASIIAKTTRDALMQQLHEEFPVYGWDRNVGYPTRTHYEALARY 184 Query: 192 GPSCIHRLTFR 202 GPS HR +FR Sbjct: 185 GPSPYHRRSFR 195 >gi|94988631|ref|YP_596732.1| ribonuclease HII [Streptococcus pyogenes MGAS9429] gi|94992454|ref|YP_600553.1| ribonuclease HII [Streptococcus pyogenes MGAS2096] gi|166226658|sp|Q1JBP9|RNH2_STRPB RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226659|sp|Q1JLN1|RNH2_STRPC RecName: Full=Ribonuclease HII; Short=RNase HII gi|94542139|gb|ABF32188.1| ribonuclease HII [Streptococcus pyogenes MGAS9429] gi|94545962|gb|ABF36009.1| Ribonuclease HII [Streptococcus pyogenes MGAS2096] Length = 263 Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 83/200 (41%), Positives = 121/200 (60%), Gaps = 6/200 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +K +AGIDEVGRG LAGPVV A +IL G+NDSKKI K E + Sbjct: 59 LSYEKALYKKGYQAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKSKHETI 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127 Y+ + A+ I I +Q ID+ NI++AT A+ A++ L+ P LID ++ Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLESQLTQPDYLLIDAMTL-- 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D+ +++KGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T +H Q Sbjct: 177 DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQG 236 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 +K G + IHR +F P++++ Sbjct: 237 LKAYGITPIHRKSFEPVKSM 256 >gi|327462197|gb|EGF08524.1| ribonuclease HII [Streptococcus sanguinis SK1] Length = 254 Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 84/197 (42%), Positives = 121/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +++ Sbjct: 58 LRYEKELYQTGFRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQDI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A+ + + ++ ID+ NI++AT A+ A+ L + P LID + D+ Sbjct: 118 YQAVMDKALAVGVGLIDNEIIDQVNIYEATKLAMKEALSKLCLKPDYLLIDAMKL--DID 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM K+YP Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 HGVTPIHRKTFEPVKSM 252 >gi|89075406|ref|ZP_01161823.1| ribonuclease HII [Photobacterium sp. SKA34] gi|89048822|gb|EAR54392.1| ribonuclease HII [Photobacterium sp. SKA34] Length = 203 Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 91/196 (46%), Positives = 121/196 (61%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E V + +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK++ KKR L+ Sbjct: 6 EFEPFVYPQ-ATCIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTEKKRNLLF 64 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I A+ S+ IDK NI +AT+ A+ AV L + P LIDG +PE LP Sbjct: 65 DEIKEKALSWSLGRCEADEIDKLNILQATMVAMQRAVAGLSLQPDYVLIDGNKVPE-LPM 123 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A AV+KGD I+AASIIAKVTRDR M I ++P YGF H GYPT H + +++ Sbjct: 124 AAQAVVKGDLRVAEISAASIIAKVTRDREMEILGAEFPQYGFAKHKGYPTKAHFEALEQY 183 Query: 192 GPSCIHRLTFRPLRNL 207 G HR +F+P++ + Sbjct: 184 GAIEQHRKSFKPVKRV 199 >gi|226327034|ref|ZP_03802552.1| hypothetical protein PROPEN_00895 [Proteus penneri ATCC 35198] gi|225204252|gb|EEG86606.1| hypothetical protein PROPEN_00895 [Proteus penneri ATCC 35198] Length = 196 Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 89/183 (48%), Positives = 115/183 (62%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK++ KKR LY++I A+ +I Sbjct: 10 LIAGVDEVGRGPLVGAVVTAAVILDPANPIEGLTDSKKLTEKKRNALYDEIKEKALCWAI 69 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L + P LIDG P+ LP + AVIKGDS+ Sbjct: 70 GRAEPEEIDELNILWATMKAMERAVAGLSITPDMVLIDGNRCPK-LPMASQAVIKGDSLV 128 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M K YPDYGF H GYPT H + + G + HR +F P Sbjct: 129 QEISAASILAKVTRDREMEELDKLYPDYGFAKHKGYPTVFHMEKLALLGATPYHRKSFAP 188 Query: 204 LRN 206 ++ Sbjct: 189 VKR 191 >gi|188533051|ref|YP_001906848.1| Ribonuclease HII [Erwinia tasmaniensis Et1/99] gi|238691983|sp|B2VHY0|RNH2_ERWT9 RecName: Full=Ribonuclease HII; Short=RNase HII gi|188028093|emb|CAO95950.1| Ribonuclease HII [Erwinia tasmaniensis Et1/99] Length = 207 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 115/184 (62%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DEVGRG L G VV AA+ILDP+ G+ DSKK+S K+R LY++I A+ S Sbjct: 10 RLIAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLGDSKKLSEKRRLALYDEIKDKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI AT+ A+ AV L + P LIDG P L + AV+KGDS+ Sbjct: 70 LGRAEPEEIDQLNILHATMLAMQRAVAGLHLSPDFVLIDGNRCPA-LAMPSRAVVKGDSL 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M +YP YGF H GYPTA H + + + G + HR +F Sbjct: 129 VPEISAASILAKVTRDREMCELDLQYPQYGFARHKGYPTAVHVEKLAQFGATPQHRRSFA 188 Query: 203 PLRN 206 P+RN Sbjct: 189 PVRN 192 >gi|145630149|ref|ZP_01785931.1| ribonuclease HII [Haemophilus influenzae R3021] gi|144984430|gb|EDJ91853.1| ribonuclease HII [Haemophilus influenzae R3021] Length = 197 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 86/187 (45%), Positives = 119/187 (63%), Gaps = 1/187 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L E+I A+ Sbjct: 6 QGYELIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLALAEEIKEKAL 65 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ A ID+ NI +A+L A+ A+++L++ P L+DG IP+DL A AV+KG Sbjct: 66 AWALGRAEANEIDEINILQASLLAMTRAIKSLKIQPHFVLVDGNKIPKDLAIPAQAVVKG 125 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS+ I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR Sbjct: 126 DSLVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRR 185 Query: 200 TFRPLRN 206 +F P++ Sbjct: 186 SFAPVKK 192 >gi|319898589|ref|YP_004158682.1| Ribonuclease HII [Bartonella clarridgeiae 73] gi|319402553|emb|CBI76098.1| Ribonuclease HII [Bartonella clarridgeiae 73] Length = 212 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 103/208 (49%), Positives = 146/208 (70%), Gaps = 4/208 (1%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 MF ++P +P+F E +++K + +AG+DEVGRG LAGPVV AA++LD + IP G+NDS Sbjct: 1 MF--NVPFQPNFSYELDLQKKGFFYIAGVDEVGRGPLAGPVVTAAVVLDKDCIPEGVNDS 58 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK+S ++R +LY +I +A+ IS++S + IDK +I KATL+A+ + L + AL Sbjct: 59 KKLSSQQRNKLYYEILQNALAISVASICARTIDKSDIRKATLEAMRRCISGLAISAHYAL 118 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 IDGR +P +LPC A A+IKGD S+SIAAASIIAKV RDR+M+ A + Y +YG + HVGY Sbjct: 119 IDGRDVPPNLPCPAIALIKGDQSSVSIAAASIIAKVMRDRMMQYAGQVYQNYGLEKHVGY 178 Query: 180 PTAKHQQVIKEKGPS-CIHRLTFRPLRN 206 TA H+ I + GP +HR +F PL+ Sbjct: 179 ATAAHRAAIDKYGPIVRLHRYSFSPLKE 206 >gi|307260586|ref|ZP_07542278.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869663|gb|EFN01448.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 186 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 87/183 (47%), Positives = 117/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L +I + A+ S+ Sbjct: 2 IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLLLAGEIKAKALCWSLG 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L + P L+DG IP LP A AVIKGDS+ Sbjct: 62 RAEPEEIDRLNILHATMLAMQRAVAGLNIQPDFVLVDGNRIPT-LPMPAQAVIKGDSLVA 120 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M +YP+YGF H GYPT H + +++ G + HR +F P+ Sbjct: 121 EISAASILAKVARDQEMAELDVQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKSFAPV 180 Query: 205 RNL 207 + + Sbjct: 181 KKI 183 >gi|324991142|gb|EGC23076.1| ribonuclease HII [Streptococcus sanguinis SK353] Length = 254 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 123/197 (62%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+ Sbjct: 58 LRYEKELYQAGYRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A+ + + +++ ID+ NI++AT A+ A+ L + P LID + D+P Sbjct: 118 YQAVLDKALAVGVGLMNNEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKLDVDIP 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM K+YP Y F + GY T H Q ++ Sbjct: 178 --QESIIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 HGVTPIHRKTFEPVKSM 252 >gi|293365454|ref|ZP_06612163.1| ribonuclease HII [Streptococcus oralis ATCC 35037] gi|291315822|gb|EFE56266.1| ribonuclease HII [Streptococcus oralis ATCC 35037] Length = 259 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 87/197 (44%), Positives = 123/197 (62%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGVDEVGRGPLAGPVVAAAVILPKNCKIRGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y + A+ I I +Q ID+ NI++AT A+ A+ + P LID + +L Sbjct: 118 YHAVQDQALAIGIGIMDNQVIDQVNIYEATKLAMKEAISQVSPKPEHLLIDAMKL--ELS 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD+ SLSIAAASI+AKVTRD LM+ ++YP Y F ++ GY TAKH + +++ Sbjct: 176 IPQTAIIKGDANSLSIAAASIVAKVTRDELMKEYDQQYPGYDFTANAGYGTAKHLEGLEK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++ L Sbjct: 236 LGVTPIHRTSFEPVKTL 252 >gi|315179359|gb|ADT86273.1| ribonuclease HII [Vibrio furnissii NCTC 11218] Length = 206 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 91/203 (44%), Positives = 121/203 (59%), Gaps = 2/203 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDPN+ G+NDSKK+S Sbjct: 1 MAKKPEKELPPFEIPSGYHLIAGVDEVGRGPLVGDVVTAAVILDPNHPIEGLNDSKKLSE 60 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L +I A+ S+ S Q ID+ NI +AT+ A+ AV+ L + P L+DG Sbjct: 61 KKRLALLPEIQQKALAWSVGRCSPQEIDELNIFQATMLAMQRAVDGLAIKPDLVLVDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IP LP A AV+KGD I+AASIIAKV RD+ M K YP +GF H GYPT H Sbjct: 121 IP-SLPMDAQAVVKGDLRVAQISAASIIAKVVRDQEMEELDKVYPQFGFAKHKGYPTKAH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 + I++ G HR +F P++ + Sbjct: 180 FEAIEQHGVIDQHRRSFGPVKRV 202 >gi|256823113|ref|YP_003147076.1| Ribonuclease H [Kangiella koreensis DSM 16069] gi|256796652|gb|ACV27308.1| Ribonuclease H [Kangiella koreensis DSM 16069] Length = 191 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 90/184 (48%), Positives = 121/184 (65%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG LAGPVV AA+ILDP N G+ DSKK++ K+RE L +I A+ SI Sbjct: 6 LIAGVDEVGRGPLAGPVVAAAVILDPANPIVGLADSKKLTEKRREALSIEIKEKALAWSI 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI +A+L A+ AVE L P ALIDG PE L C+ A+IKGDS Sbjct: 66 ARAEVEEIDRINILQASLLAMKRAVETLSHSPELALIDGNHCPE-LDCRMEAIIKGDSKE 124 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKV RD M + YP YGF H GYPT +H++ I + G + IHR ++ P Sbjct: 125 PAISAASILAKVARDTEMVEMEQTYPGYGFAKHKGYPTQQHREAIMQLGITPIHRRSYAP 184 Query: 204 LRNL 207 ++ + Sbjct: 185 VQRM 188 >gi|163733084|ref|ZP_02140528.1| ribonuclease HII [Roseobacter litoralis Och 149] gi|161393619|gb|EDQ17944.1| ribonuclease HII [Roseobacter litoralis Och 149] Length = 209 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 88/198 (44%), Positives = 133/198 (67%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P+FE+E VAG+DEVGRG LAGPV AA++LDP NIP G+NDSK++S K+R Sbjct: 3 PNFEMEEAAMALGALRVAGVDEVGRGPLAGPVTAAAVVLDPANIPDGLNDSKQLSAKRRN 62 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L E + SSA IS+ AS + I++HNI +A+ A+ A+ L++ P LIDG +P+ L Sbjct: 63 LLGEALASSADISVGHASVEEIEQHNILRASHIAMLRALAGLRLRPDYVLIDGSMVPKGL 122 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +A V+KGD+ LSI+AASIIAK+ RD++M +++P YG+++++GY + H ++ Sbjct: 123 NLRAQPVVKGDTRCLSISAASIIAKIARDKIMVDLAQQHPGYGWETNMGYGSKSHISALR 182 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + HR TF+P+ ++ Sbjct: 183 NLGVTPHHRRTFKPVHHM 200 >gi|321315372|ref|YP_004207659.1| ribonuclease HII [Bacillus subtilis BSn5] gi|320021646|gb|ADV96632.1| ribonuclease HII [Bacillus subtilis BSn5] Length = 255 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 84/196 (42%), Positives = 121/196 (61%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + R K +AG+DEVGRG LAGPVV +A+IL G+ DSKK+S KKREE Y Sbjct: 61 SYERLARNKGFRLMAGVDEVGRGPLAGPVVASAVILPEECEILGLTDSKKLSEKKREEYY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I A+ + I ID+ NI++A+ A+ A+++L P L+D ++P L Sbjct: 121 ELIMKEALAVGIGIVEATVIDEINIYEASKMAMVKAIQDLSDTPDYLLVDAMTLP--LDT 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAA+ IAKVTRDR+M + YP YGF+ + GY T +H + + Sbjct: 179 AQASIIKGDAKSVSIAAAACIAKVTRDRMMSAYAETYPMYGFEKNKGYGTKEHLEALAAY 238 Query: 192 GPSCIHRLTFRPLRNL 207 GP+ +HR TF P+++ Sbjct: 239 GPTELHRKTFAPVQSF 254 >gi|260581887|ref|ZP_05849683.1| ribonuclease HII [Haemophilus influenzae NT127] gi|260095080|gb|EEW78972.1| ribonuclease HII [Haemophilus influenzae NT127] Length = 197 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 84/187 (44%), Positives = 119/187 (63%), Gaps = 1/187 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L ++I A+ Sbjct: 6 QGYELIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALADEIKEKAL 65 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL + AV+KG Sbjct: 66 AWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPSQAVVKG 125 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS+ I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR Sbjct: 126 DSLVAEISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAELGALPQHRR 185 Query: 200 TFRPLRN 206 +F P++ Sbjct: 186 SFAPVKK 192 >gi|89092102|ref|ZP_01165057.1| ribonuclease HII [Oceanospirillum sp. MED92] gi|89083837|gb|EAR63054.1| ribonuclease HII [Oceanospirillum sp. MED92] Length = 199 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 90/184 (48%), Positives = 116/184 (63%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDPN G+ DSKK++ K+RE LY +I A+ + Sbjct: 13 LIAGVDEVGRGPLVGNVVAAAVILDPNKPIEGLADSKKLTAKRREALYHEIKDKALAWCV 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS + ID+ NI A++ A+ AVE L + +DG P DL C + V+KGDS Sbjct: 73 ASASPEEIDQINILHASMLAMKRAVEGLPLKAEFVYVDGNRSP-DLECPSEPVVKGDSKI 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RDR M K YP YGF H GYPTA H +KE GP HR +F+P Sbjct: 132 PEISAASILAKVDRDREMEELDKTYPQYGFAKHKGYPTAAHFAALKEHGPLLEHRRSFKP 191 Query: 204 LRNL 207 +R L Sbjct: 192 VREL 195 >gi|309973468|gb|ADO96669.1| Ribonuclease HII [Haemophilus influenzae R2846] Length = 197 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 86/187 (45%), Positives = 119/187 (63%), Gaps = 1/187 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L ++I A+ Sbjct: 6 QGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALADEIKEKAL 65 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+KG Sbjct: 66 AWALGRAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKG 125 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DSI I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR Sbjct: 126 DSIVAEISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAEFGTLPQHRR 185 Query: 200 TFRPLRN 206 +F P++ Sbjct: 186 SFAPVKK 192 >gi|145638129|ref|ZP_01793739.1| ribonuclease HII [Haemophilus influenzae PittII] gi|145272458|gb|EDK12365.1| ribonuclease HII [Haemophilus influenzae PittII] gi|309751294|gb|ADO81278.1| Ribonuclease HII [Haemophilus influenzae R2866] Length = 197 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 86/187 (45%), Positives = 119/187 (63%), Gaps = 1/187 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I A+ Sbjct: 6 QGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKAL 65 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+KG Sbjct: 66 AWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKG 125 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS+ I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR Sbjct: 126 DSLVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAEFGALPQHRR 185 Query: 200 TFRPLRN 206 +F P++ Sbjct: 186 SFAPVKK 192 >gi|145632423|ref|ZP_01788158.1| ribonuclease HII [Haemophilus influenzae 3655] gi|144987330|gb|EDJ93860.1| ribonuclease HII [Haemophilus influenzae 3655] Length = 197 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 85/187 (45%), Positives = 119/187 (63%), Gaps = 1/187 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L ++I A+ Sbjct: 6 QGYELIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALADEIKEKAL 65 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+KG Sbjct: 66 AWALGRAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKG 125 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS+ I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR Sbjct: 126 DSLVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRR 185 Query: 200 TFRPLRN 206 +F P++ Sbjct: 186 SFAPVKK 192 >gi|229846090|ref|ZP_04466202.1| ribonuclease HII [Haemophilus influenzae 7P49H1] gi|229811094|gb|EEP46811.1| ribonuclease HII [Haemophilus influenzae 7P49H1] Length = 197 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 86/187 (45%), Positives = 119/187 (63%), Gaps = 1/187 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I A+ Sbjct: 6 QGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKAL 65 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+KG Sbjct: 66 AWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKG 125 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS+ I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR Sbjct: 126 DSLVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRR 185 Query: 200 TFRPLRN 206 +F P++ Sbjct: 186 SFAPVKK 192 >gi|148828223|ref|YP_001292976.1| ribonuclease HII [Haemophilus influenzae PittGG] gi|166225191|sp|A5UII7|RNH2_HAEIG RecName: Full=Ribonuclease HII; Short=RNase HII gi|148719465|gb|ABR00593.1| ribonuclease HII [Haemophilus influenzae PittGG] Length = 197 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 87/187 (46%), Positives = 119/187 (63%), Gaps = 1/187 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L ++I A+ Sbjct: 6 QGYELIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLALADEIKEKAL 65 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+KG Sbjct: 66 AWALGRAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLAIPAQAVVKG 125 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DSI I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR Sbjct: 126 DSIVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAEFGALPQHRR 185 Query: 200 TFRPLRN 206 +F P++ Sbjct: 186 SFAPVKK 192 >gi|331266372|ref|YP_004326002.1| ribonuclease HII [Streptococcus oralis Uo5] gi|326683044|emb|CBZ00661.1| ribonuclease HII [Streptococcus oralis Uo5] Length = 259 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 87/197 (44%), Positives = 122/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AG+DEVGRG LAGPVV AA+IL G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLSLIAGVDEVGRGPLAGPVVAAAVILPKKCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y + A+ I I ++ ID+ NI++AT A+ A+ L P LID + +LP Sbjct: 118 YHAVQDQALAIGIGIMDNEVIDQVNIYEATKLAMKEAISQLSPQPEHLLIDAMKL--ELP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD+ SLSIAAASI+AKVTRD LM+ +YP Y F ++ GY TAKH + +++ Sbjct: 176 ILQTAIIKGDANSLSIAAASIVAKVTRDELMKEYDNQYPGYDFTANAGYGTAKHLEGLEK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++ L Sbjct: 236 LGVTPIHRTSFEPVKTL 252 >gi|325912821|ref|ZP_08175199.1| ribonuclease HII [Lactobacillus iners UPII 60-B] gi|325477814|gb|EGC80948.1| ribonuclease HII [Lactobacillus iners UPII 60-B] Length = 250 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 94/197 (47%), Positives = 126/197 (63%), Gaps = 4/197 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E +N VAG+DEVGRG LAGPVV AA+ILD N +NDSKK++ KKR E Sbjct: 55 RFSYEKEFWCQN-KLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKKLTPKKRNE 113 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A+ +S+ A++ IDK NI++A A+ AV+ L+V P + L+D +P DL Sbjct: 114 LFPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVDAMDVPVDL 173 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +I+GDS S SIAAASI+AKV RDRLM + YP+Y F + GY TAKH +K Sbjct: 174 P--QLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGTAKHLSALK 231 Query: 190 EKGPSCIHRLTFRPLRN 206 + GP+ IHR +F P+ + Sbjct: 232 QYGPTPIHRFSFEPVSS 248 >gi|300024383|ref|YP_003756994.1| ribonuclease H [Hyphomicrobium denitrificans ATCC 51888] gi|299526204|gb|ADJ24673.1| Ribonuclease H [Hyphomicrobium denitrificans ATCC 51888] Length = 231 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 96/197 (48%), Positives = 123/197 (62%), Gaps = 1/197 (0%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P FELEA + P+AG+DE GRG AGPVV AA+ILDP+ IP I+DSK + R Sbjct: 9 KPTFELEAAEHQLGSRPIAGVDEAGRGPWAGPVVAAAVILDPDKIPANIDDSKTLDEDSR 68 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 LY +I AI+ + A ID+ NI ATL A+ AV L P+ L+DG P Sbjct: 69 AFLYRRIMKVAIVGVGIADVDRIDRENILGATLWAMAEAVSQLGETPKLVLVDGDKTPR- 127 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 +P A++KGDS LSIAAASI+AKVTRDRLM + YP YGF+ H GY T +HQ I Sbjct: 128 IPMSVRAIVKGDSKCLSIAAASIVAKVTRDRLMMDFARAYPGYGFERHKGYGTPEHQAAI 187 Query: 189 KEKGPSCIHRLTFRPLR 205 + G S +HR +FRP++ Sbjct: 188 AKLGVSALHRRSFRPVQ 204 >gi|323497990|ref|ZP_08102999.1| ribonuclease HII [Vibrio sinaloensis DSM 21326] gi|323317035|gb|EGA70037.1| ribonuclease HII [Vibrio sinaloensis DSM 21326] Length = 205 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 87/187 (46%), Positives = 116/187 (62%), Gaps = 2/187 (1%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + +AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKR L +I A+ Sbjct: 15 QGYQRIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEKAL 74 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 S+ S ID+ NI +AT+ A+ A++ L V P ALIDG PE L + AV+KG Sbjct: 75 AWSVGRCSPTEIDQLNILQATMVAMQRAIDGLAVKPDLALIDGNRCPE-LAMDSQAVVKG 133 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D I+AASIIAKV RD+ M K +P++GF H GYPT H + I++ G HR Sbjct: 134 DLRVAEISAASIIAKVVRDQEMEELDKLHPEFGFAKHKGYPTKAHFEAIEKHGVIEQHRK 193 Query: 200 TFRPLRN 206 +F+P++ Sbjct: 194 SFKPVKK 200 >gi|146281925|ref|YP_001172078.1| ribonuclease HII [Pseudomonas stutzeri A1501] gi|166226642|sp|A4VJT5|RNH2_PSEU5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|145570130|gb|ABP79236.1| ribonuclease HII [Pseudomonas stutzeri A1501] gi|327480168|gb|AEA83478.1| ribonuclease HII [Pseudomonas stutzeri DSM 4166] Length = 212 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 89/184 (48%), Positives = 119/184 (64%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L GPVV AA+ILDP G+NDSKK++ +RE L+++I A+ I Sbjct: 13 LVAGVDEVGRGPLCGPVVTAAVILDPARPIEGLNDSKKLTEARREALFDEIREKAVAWCI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI AT+ A+ AVE L V PR ALIDG P+ L + VI+GD+ Sbjct: 73 ARAEVEEIDQLNILHATMLAMQRAVEGLSVTPRLALIDGNRCPQ-LAVPSAPVIQGDAQV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV+RDR M+ YP YG H GYPT H + ++ GP+ IHR +F P Sbjct: 132 PAIAAASILAKVSRDREMQALDLCYPGYGLAGHKGYPTPSHLEALRRLGPTPIHRRSFAP 191 Query: 204 LRNL 207 +R + Sbjct: 192 VRAM 195 >gi|298245602|ref|ZP_06969408.1| Ribonuclease H [Ktedonobacter racemifer DSM 44963] gi|297553083|gb|EFH86948.1| Ribonuclease H [Ktedonobacter racemifer DSM 44963] Length = 223 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 85/206 (41%), Positives = 123/206 (59%), Gaps = 9/206 (4%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-------GINDSKK 62 P E + E+ +AG+DE GRG LAGPVV AA+IL + P G+NDSK+ Sbjct: 9 PTLTEEMALFEQGYCFIAGLDEAGRGCLAGPVVAAAVILPLESNPTPVLARFTGVNDSKQ 68 Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 ++ RE LY+ I A+ + + S + ID+ NI +ATL ++ A+ L ++ L+D Sbjct: 69 LNEATRERLYDVIMEHALAVGVGIGSVELIDQRNILQATLQSMRVALTQLTPTAQALLLD 128 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + D+P ++ KGDS LSIAAASIIAKVTRDRLM H+++P YGF H GY T Sbjct: 129 AVRL-RDIPLPQLSLTKGDSRCLSIAAASIIAKVTRDRLMHQLHEEFPRYGFKQHKGYGT 187 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207 +H + +K+ G + HR +F P+R + Sbjct: 188 PEHLEALKQFGVTPHHRRSFSPIREM 213 >gi|194014254|ref|ZP_03052871.1| ribonuclease HII (RNase HII) [Bacillus pumilus ATCC 7061] gi|194013280|gb|EDW22845.1| ribonuclease HII (RNase HII) [Bacillus pumilus ATCC 7061] Length = 254 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 120/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + + +AGIDE GRG LAGPVV AA+IL + + G+NDSK++S KKR Sbjct: 58 LQFENNAKAQGYTCIAGIDEAGRGPLAGPVVAAAVILKEDTVLLGLNDSKQLSEKKRLAY 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ I I ID+ NI++A+ A+ AVE L P LID ++P LP Sbjct: 118 YDLIQKEALDIGIGIVDAATIDEINIYEASRLAMVRAVEQLTHTPDYLLIDAMTLP--LP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S SIAA + IAKVTRD++M +KYP+Y F+ H GY T +H I+ Sbjct: 176 IHQENIIKGDAKSASIAAGACIAKVTRDQMMEEYGRKYPEYQFEKHKGYGTKEHLAAIQT 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHRL+F P++++ Sbjct: 236 HGAAPIHRLSFAPVKSV 252 >gi|88798271|ref|ZP_01113857.1| ribonuclease HII [Reinekea sp. MED297] gi|88779047|gb|EAR10236.1| ribonuclease HII [Reinekea sp. MED297] Length = 202 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 91/187 (48%), Positives = 123/187 (65%), Gaps = 1/187 (0%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 + VAG+DEVGRG LAG VV AA+ILDP G+NDSKK+S +R L + I +A+ Sbjct: 11 ELSHVAGVDEVGRGPLAGKVVTAAVILDPARPIDGLNDSKKLSPARRLALSQHIRENALS 70 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 +++ AS + ID+ NI AT+ A+ AVE L V P LIDG +P LPC A A++KGD Sbjct: 71 YAVAEASVEEIDELNILGATMLAMRRAVEALSVAPNFCLIDGNRLPPGLPCPAEAIVKGD 130 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 +I+AASI+AKVTRD+ M H+++P+YGFD H GY TA+H + + GP HR + Sbjct: 131 GSVPAISAASILAKVTRDQQMLDLHQQHPEYGFDQHKGYGTAQHLAALVKFGPLKEHRRS 190 Query: 201 FRPLRNL 207 F P+R L Sbjct: 191 FAPVRKL 197 >gi|317046996|ref|YP_004114644.1| ribonuclease H [Pantoea sp. At-9b] gi|316948613|gb|ADU68088.1| Ribonuclease H [Pantoea sp. At-9b] Length = 208 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 88/186 (47%), Positives = 116/186 (62%), Gaps = 2/186 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 N +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A+ Sbjct: 8 NARLIAGVDEVGRGPLVGAVVTAAVILDPAQPIIGLADSKKLSEKRRLALYDEIKEKALA 67 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 S+ A + ID+ NI AT+ A+ AV L ++P LIDG P LP + AV+KGD Sbjct: 68 WSLGRAEPEEIDQINILHATMLAMQRAVAGLPLVPDFVLIDGNRCPA-LPMPSQAVVKGD 126 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+ I+AASI+AKVTRDR M +P YGF H GYPTA H + + + G + HR + Sbjct: 127 SLVAEISAASILAKVTRDREMAELDALFPQYGFAQHKGYPTALHMERLTQHGATPHHRRS 186 Query: 201 FRPLRN 206 F P+RN Sbjct: 187 FAPVRN 192 >gi|324994471|gb|EGC26384.1| ribonuclease HII [Streptococcus sanguinis SK678] Length = 254 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 120/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+ Sbjct: 58 LRYEKELYKAGYQAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A+ + I ++ ID+ NI++AT A+ A+ L P LID + D+P Sbjct: 118 YQAVLDKALAVGIGLIDNEIIDRVNIYEATKLAMKEALSVLSHKPDYLLIDAMKLDVDIP 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ S SIAAASI+AKVTRD+LM K+YP Y F + GY T H Q ++ Sbjct: 178 --QESIIKGDANSQSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 HGVTPIHRKTFEPIKSM 252 >gi|309805705|ref|ZP_07699745.1| ribonuclease HII [Lactobacillus iners LactinV 09V1-c] gi|309806745|ref|ZP_07700739.1| ribonuclease HII [Lactobacillus iners LactinV 03V1-b] gi|312873998|ref|ZP_07734034.1| ribonuclease HII [Lactobacillus iners LEAF 2052A-d] gi|312875510|ref|ZP_07735513.1| ribonuclease HII [Lactobacillus iners LEAF 2053A-b] gi|315653520|ref|ZP_07906441.1| ribonuclease HII [Lactobacillus iners ATCC 55195] gi|308164958|gb|EFO67201.1| ribonuclease HII [Lactobacillus iners LactinV 09V1-c] gi|308166860|gb|EFO69045.1| ribonuclease HII [Lactobacillus iners LactinV 03V1-b] gi|311089021|gb|EFQ47462.1| ribonuclease HII [Lactobacillus iners LEAF 2053A-b] gi|311090547|gb|EFQ48955.1| ribonuclease HII [Lactobacillus iners LEAF 2052A-d] gi|315489211|gb|EFU78852.1| ribonuclease HII [Lactobacillus iners ATCC 55195] Length = 250 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 94/202 (46%), Positives = 128/202 (63%), Gaps = 4/202 (1%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + + F E +N VAG+DEVGRG LAGPVV AA+ILD N +NDSKK++ Sbjct: 50 LEFKTRFSYEKEFWCQN-KLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKKLTP 108 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR EL+ I A+ +S+ A++ IDK NI++A A+ AV+ L+V P + L+D Sbjct: 109 KKRNELFPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVDAMD 168 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P DLP +I+GDS S SIAAASI+AKV RDRLM + YP+Y F + GY TAKH Sbjct: 169 VPVDLP--QLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGTAKH 226 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 +K+ GP+ IHR +F P+ + Sbjct: 227 LSALKQYGPTPIHRFSFEPVSS 248 >gi|153213786|ref|ZP_01948994.1| ribonuclease HII [Vibrio cholerae 1587] gi|124115710|gb|EAY34530.1| ribonuclease HII [Vibrio cholerae 1587] Length = 206 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 92/202 (45%), Positives = 123/202 (60%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSE 60 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A+ ++ S Q ID+ NI +AT+ A+ AV L++ P LIDG Sbjct: 61 KKRLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IP+ LP +A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 121 IPK-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|306827335|ref|ZP_07460622.1| ribonuclease HII [Streptococcus pyogenes ATCC 10782] gi|304430482|gb|EFM33504.1| ribonuclease HII [Streptococcus pyogenes ATCC 10782] Length = 263 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 82/200 (41%), Positives = 122/200 (61%), Gaps = 6/200 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ +AGIDEVGRG LAGPVV A +IL + G+NDSKKI K E + Sbjct: 59 LSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKSKHETI 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127 Y+ + A+ I I +Q ID+ NI++AT A+ A++ L+ P LID ++ Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTL-- 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D+ +++KGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T +H Q Sbjct: 177 DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQG 236 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 +K G + IHR +F P++++ Sbjct: 237 LKAYGITPIHRKSFEPVKSM 256 >gi|319776686|ref|YP_004139174.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Haemophilus influenzae F3047] gi|329124205|ref|ZP_08252752.1| ribonuclease HII [Haemophilus aegyptius ATCC 11116] gi|317451277|emb|CBY87511.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Haemophilus influenzae F3047] gi|327467630|gb|EGF13128.1| ribonuclease HII [Haemophilus aegyptius ATCC 11116] Length = 197 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 88/187 (47%), Positives = 119/187 (63%), Gaps = 1/187 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I A+ Sbjct: 6 QGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKAL 65 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ A ID+ NI +A+L A+ AV++L++ P LIDG IP+DL A AV+KG Sbjct: 66 AWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLIDGNKIPKDLDIPAQAVVKG 125 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DSI I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR Sbjct: 126 DSIVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRR 185 Query: 200 TFRPLRN 206 +F P++ Sbjct: 186 SFAPVKK 192 >gi|261344722|ref|ZP_05972366.1| ribonuclease HII [Providencia rustigianii DSM 4541] gi|282567164|gb|EFB72699.1| ribonuclease HII [Providencia rustigianii DSM 4541] Length = 196 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 86/183 (46%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK++ KKRE+L+++I A+ I Sbjct: 10 LIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLTEKKREKLFDEIKEKALCWCI 69 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L + P L+DG P+ L + AV+KGDS+ Sbjct: 70 GRAEPNEIDELNILHATMLAMQRAVAGLSITPEFVLVDGNRCPK-LSMPSQAVVKGDSLV 128 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RDR M K +P+YGF H GYPTA H + + + G + HR +F P Sbjct: 129 QEISAASILAKVVRDREMVELDKVFPEYGFAKHKGYPTAYHLEKLAQFGATEFHRKSFAP 188 Query: 204 LRN 206 +R Sbjct: 189 VRR 191 >gi|257465535|ref|ZP_05629906.1| ribonuclease HII [Actinobacillus minor 202] gi|257451195|gb|EEV25238.1| ribonuclease HII [Actinobacillus minor 202] Length = 196 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 89/184 (48%), Positives = 117/184 (63%), Gaps = 2/184 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 N +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR +L E+I + A+ Sbjct: 8 NAKLIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLSEKKRLKLSEEIKAKALS 67 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 S+ A + ID+ NI AT+ A+ AVE L + P L+DG IP L A AV+KGD Sbjct: 68 WSLGRAEPEEIDQLNILHATMLAMQRAVEGLHIQPDFVLVDGNRIPT-LNIPAQAVVKGD 126 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+ I+AASI+AKV RD M K++P+YGF H GYPT H + + E G + HR + Sbjct: 127 SLVQEISAASILAKVARDLEMDELDKQFPEYGFAKHKGYPTKLHFEKLTELGATPFHRKS 186 Query: 201 FRPL 204 F P+ Sbjct: 187 FAPV 190 >gi|303271053|ref|XP_003054888.1| ribonuclease HII [Micromonas pusilla CCMP1545] gi|226462862|gb|EEH60140.1| ribonuclease HII [Micromonas pusilla CCMP1545] Length = 256 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 83/200 (41%), Positives = 121/200 (60%), Gaps = 2/200 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P E M ++ V G+DE GRG LAGPVV AA + + + INDSK+++ + RE Sbjct: 46 PSRAHEQMYWDQGKKIVCGVDEAGRGPLAGPVVAAACVFPEDLVIDAINDSKQMTEEDRE 105 Query: 70 ELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E+YE++ + + S+ H+ ID NI +AT+ A+ +VE L L+DG +PE Sbjct: 106 EVYEQLMENPEVLKSVCVIDHKEIDDINILEATMKAMRKSVEGLPTKADWVLVDGNRVPE 165 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L +A A++KGD+ S+ IAAAS++AKVTRDR+M K++P+YGF H GY H Sbjct: 166 PLKGRAEAIVKGDAKSVCIAAASVLAKVTRDRMMVEIAKEHPEYGFAEHKGYGVKSHMAA 225 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 I E GP HR+TF P++ + Sbjct: 226 IHEHGPCPYHRMTFAPMKYM 245 >gi|301169801|emb|CBW29405.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Haemophilus influenzae 10810] Length = 197 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 87/187 (46%), Positives = 119/187 (63%), Gaps = 1/187 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I A+ Sbjct: 6 QGYELIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKAL 65 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+KG Sbjct: 66 AWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKG 125 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DSI I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR Sbjct: 126 DSIVAEISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAELGALPQHRR 185 Query: 200 TFRPLRN 206 +F P++ Sbjct: 186 SFAPVKK 192 >gi|229843904|ref|ZP_04464045.1| ribonuclease HII [Haemophilus influenzae 6P18H1] gi|229812898|gb|EEP48586.1| ribonuclease HII [Haemophilus influenzae 6P18H1] Length = 197 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 85/187 (45%), Positives = 119/187 (63%), Gaps = 1/187 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L ++I A+ Sbjct: 6 QGYELIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALADEIKEKAL 65 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+KG Sbjct: 66 AWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKG 125 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS+ I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR Sbjct: 126 DSLVAEISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAELGALPQHRR 185 Query: 200 TFRPLRN 206 +F P++ Sbjct: 186 SFAPVKK 192 >gi|260767811|ref|ZP_05876746.1| ribonuclease HII [Vibrio furnissii CIP 102972] gi|260617320|gb|EEX42504.1| ribonuclease HII [Vibrio furnissii CIP 102972] Length = 206 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 91/203 (44%), Positives = 121/203 (59%), Gaps = 2/203 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDPN+ G+NDSKK+S Sbjct: 1 MAKKPEKELPPFEIPSGYHLIAGVDEVGRGPLVGDVVTAAVILDPNHPIEGLNDSKKLSE 60 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L +I A+ S+ S Q ID+ NI +AT+ A+ AV+ L + P L+DG Sbjct: 61 KKRLALLPEIQQKALAWSVGRCSPQEIDELNIFQATMLAMQRAVDGLAIKPDLVLVDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IP LP A AV+KGD I+AASIIAKV RD+ M K YP +GF H GYPT H Sbjct: 121 IP-SLPMDAQAVVKGDLRVAQISAASIIAKVVRDQEMEELDKAYPQFGFAKHKGYPTKAH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 + I++ G HR +F P++ + Sbjct: 180 FEAIEQHGVIDQHRRSFGPVKRV 202 >gi|227432240|ref|ZP_03914236.1| ribonuclease HII [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352013|gb|EEJ42243.1| ribonuclease HII [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 253 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 93/198 (46%), Positives = 123/198 (62%), Gaps = 3/198 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F++E + +AG+DEVGRG LAGPVV AAIIL + + DSK++S KKR+E Sbjct: 57 RFDIERQYWMQGYDLIAGVDEVGRGPLAGPVVAAAIILPHDFDVLDVIDSKQLSAKKRDE 116 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY+KI AI I + ID+ NI++A A+ AV L IP + LID + DL Sbjct: 117 LYDKIIEKAISIGVGRVEASIIDEINIYEAARVAMTEAVNQLAPIPEALLIDAMRLDLDL 176 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +IKGD+ S SI AASIIAKVTRDRLM KYP YGF+ + GY T +H + IK Sbjct: 177 P--QEFLIKGDARSNSIGAASIIAKVTRDRLMASYGLKYPGYGFEKNAGYGTKEHLEGIK 234 Query: 190 EKGPSCIHRLTFRPLRNL 207 + G + IHR TF P++++ Sbjct: 235 KIGITPIHRKTFAPIKDI 252 >gi|145634215|ref|ZP_01789926.1| ribonuclease HII [Haemophilus influenzae PittAA] gi|145268659|gb|EDK08652.1| ribonuclease HII [Haemophilus influenzae PittAA] Length = 197 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 87/187 (46%), Positives = 119/187 (63%), Gaps = 1/187 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L E+I A+ Sbjct: 6 QGYELIAGVDEVGRGPLVGAVVTAAVILDPNNPIQGLADSKKLSEKKRLALSEEIKEKAL 65 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+KG Sbjct: 66 AWALGRAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLAIPAQAVVKG 125 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS+ I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR Sbjct: 126 DSLVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRR 185 Query: 200 TFRPLRN 206 +F P++ Sbjct: 186 SFAPVKK 192 >gi|332360875|gb|EGJ38681.1| ribonuclease HII [Streptococcus sanguinis SK49] Length = 254 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 84/197 (42%), Positives = 121/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +++ Sbjct: 58 LRYEKELYKTGFRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQDI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A+ + + ++ ID+ NI++AT A+ A+ L + P LID + D+ Sbjct: 118 YQAVMDKALAVGVGLIDNEIIDQVNIYEATKLAMKEALSKLCLKPDYLLIDAMKL--DID 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM K+YP Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 HGVTPIHRKTFEPVKSM 252 >gi|227513336|ref|ZP_03943385.1| ribonuclease HII [Lactobacillus buchneri ATCC 11577] gi|227083209|gb|EEI18521.1| ribonuclease HII [Lactobacillus buchneri ATCC 11577] Length = 255 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 82/200 (41%), Positives = 119/200 (59%), Gaps = 3/200 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F+ E + + VAG+DEVGRG LAGPVV A IL + +NDSK+++ + R Sbjct: 57 QSRFKYERSFWHRGVNYVAGVDEVGRGPLAGPVVACATILPRDFDLIQVNDSKQLTPEIR 116 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 L +I AI I + ++ ID+ NI++AT A+ AV NL P ++D IP Sbjct: 117 ARLAPQIKREAISIGLGLVDNKGIDRLNIYEATRVAMKQAVNNLTQQPDEIIVDAMQIP- 175 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +P +IKGD+ S+S++AASI+AKV RD LM ++YP+Y F + GY TAKH Sbjct: 176 -VPIHQTRLIKGDAKSISVSAASIVAKVYRDNLMDQYAQQYPEYDFRHNAGYGTAKHLSA 234 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 +K+ G + IHR TF P++N Sbjct: 235 LKKYGATPIHRKTFAPIKNF 254 >gi|262170785|ref|ZP_06038463.1| ribonuclease HII [Vibrio mimicus MB-451] gi|261891861|gb|EEY37847.1| ribonuclease HII [Vibrio mimicus MB-451] Length = 206 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 119/202 (58%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSE 60 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A+ S+ S + ID+ NI +AT+ A+ AV L V P L+DG Sbjct: 61 KKRLALFPEIQEKALAWSVGRCSPREIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P LP A AV+KGD I+AASIIAKV RD M K+YP +GF H GYPTA H Sbjct: 121 VPT-LPMDAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAAH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|219871844|ref|YP_002476219.1| ribonuclease HII [Haemophilus parasuis SH0165] gi|219692048|gb|ACL33271.1| ribonuclease HII [Haemophilus parasuis SH0165] Length = 195 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 86/181 (47%), Positives = 115/181 (63%), Gaps = 2/181 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDPN G+ DSKK+S K+R L E+I + A+ S+ Sbjct: 9 FIAGVDEVGRGPLVGAVVTAAVILDPNQPIEGLADSKKLSEKRRLALAEEIKAKALCWSL 68 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L++ P L+DG IP LP A AV+KGDS+ Sbjct: 69 GRAEPDEIDQLNIFHATMLAMQRAVAGLRIQPDFVLVDGNRIPT-LPMPAQAVVKGDSLV 127 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RD+ M K+YP+YGF H GYPT H + ++ G + HR +F P Sbjct: 128 AEISAASILAKVARDQEMDELDKQYPEYGFAQHKGYPTKLHFEKLESLGVTPYHRKSFAP 187 Query: 204 L 204 + Sbjct: 188 V 188 >gi|299770949|ref|YP_003732975.1| ribonuclease HII [Acinetobacter sp. DR1] gi|298701037|gb|ADI91602.1| ribonuclease HII [Acinetobacter sp. DR1] Length = 188 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 82/184 (44%), Positives = 117/184 (63%), Gaps = 1/184 (0%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A+ S Sbjct: 1 MFIAGVDEAGRGPLVGSVVAAAVILDPNNPIEGLNDSKKLTEKKREKLFIEIQEKALAWS 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A+H ID+ NI +AT A+ AV+ L+ P+ ++DG IP+ + A++ GD+ Sbjct: 61 IAEATHAEIDELNILQATFLAMQRAVDGLKAQPQKVIVDGNQIPKGIIIPCEAIVGGDAS 120 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M ++YP +GF H GYPT H + I G HR ++ Sbjct: 121 HPEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIATHGVIDQHRRSYA 180 Query: 203 PLRN 206 P++ Sbjct: 181 PVKR 184 >gi|148826326|ref|YP_001291079.1| ribonuclease HII [Haemophilus influenzae PittEE] gi|166225190|sp|A5UD45|RNH2_HAEIE RecName: Full=Ribonuclease HII; Short=RNase HII gi|148716486|gb|ABQ98696.1| ribonuclease HII [Haemophilus influenzae PittEE] Length = 197 Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 86/187 (45%), Positives = 119/187 (63%), Gaps = 1/187 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L ++I A+ Sbjct: 6 QGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALADEIKEKAL 65 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+KG Sbjct: 66 AWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKG 125 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DSI I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR Sbjct: 126 DSIVAEISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAELGALPQHRR 185 Query: 200 TFRPLRN 206 +F P++ Sbjct: 186 SFAPVKK 192 >gi|19746108|ref|NP_607244.1| ribonuclease HII [Streptococcus pyogenes MGAS8232] gi|94994428|ref|YP_602526.1| ribonuclease HII [Streptococcus pyogenes MGAS10750] gi|32171675|sp|Q8P109|RNH2_STRP8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226661|sp|Q1J6K1|RNH2_STRPF RecName: Full=Ribonuclease HII; Short=RNase HII gi|19748282|gb|AAL97743.1| putative ribonuclease HII [Streptococcus pyogenes MGAS8232] gi|94547936|gb|ABF37982.1| Ribonuclease HII [Streptococcus pyogenes MGAS10750] Length = 263 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 84/200 (42%), Positives = 121/200 (60%), Gaps = 6/200 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +K +AGIDEVGRG LAGPVV A +IL G+NDSKKI K E + Sbjct: 59 LSYEKALYKKGYQAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKAKHETI 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127 Y+ + A+ I I +Q ID+ NI++AT A+ A++ L+ P LID ++ Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTL-- 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D+ ++IKGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T +H Q Sbjct: 177 DIAISQQSIIKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQG 236 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 +K G + IHR +F P++++ Sbjct: 237 LKAYGITPIHRKSFEPVKSM 256 >gi|309807515|ref|ZP_07701472.1| ribonuclease HII [Lactobacillus iners LactinV 01V1-a] gi|308169242|gb|EFO71303.1| ribonuclease HII [Lactobacillus iners LactinV 01V1-a] Length = 250 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 94/202 (46%), Positives = 128/202 (63%), Gaps = 4/202 (1%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + + F E +N VAG+DEVGRG LAGPVV AA+ILD N +NDSKK++ Sbjct: 50 LEFKTRFSYEKEFWCQN-KLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKKLTP 108 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR EL+ I A+ +S+ A++ IDK NI++A A+ AV+ L+V P + L+D Sbjct: 109 KKRNELFPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVDAMD 168 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P DLP +I+GDS S SIAAASI+AKV RDRLM + YP+Y F + GY TAKH Sbjct: 169 VPIDLP--QLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGEIYPEYDFAHNAGYGTAKH 226 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 +K+ GP+ IHR +F P+ + Sbjct: 227 LSALKQYGPTPIHRFSFEPVSS 248 >gi|258621010|ref|ZP_05716044.1| ribonuclease HII [Vibrio mimicus VM573] gi|258586398|gb|EEW11113.1| ribonuclease HII [Vibrio mimicus VM573] Length = 206 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 119/202 (58%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSE 60 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A+ S+ S + ID+ NI +AT+ A+ AV L V P L+DG Sbjct: 61 KKRLALFPEIQEKALAWSVGRCSPREIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P LP A AV+KGD I+AASIIAKV RD M K+YP +GF H GYPTA H Sbjct: 121 VPT-LPTDAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAAH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|323127302|gb|ADX24599.1| ribonuclease HII [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 256 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 81/200 (40%), Positives = 121/200 (60%), Gaps = 6/200 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ +AGIDEVGRG LAGPVV A +IL + G+NDSKKI K E + Sbjct: 59 LSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKSKHETI 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127 Y+ + A+ I I +Q ID+ NI++AT A+ A++ L+ P LID ++ Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTL-- 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D+ ++IKGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T +H Sbjct: 177 DIAIPQQSIIKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNSGYGTKEHLDG 236 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 ++ G + IHR +F P++++ Sbjct: 237 LRTHGITPIHRKSFEPIKSM 256 >gi|121586247|ref|ZP_01676037.1| ribonuclease HII [Vibrio cholerae 2740-80] gi|121549513|gb|EAX59539.1| ribonuclease HII [Vibrio cholerae 2740-80] Length = 206 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 92/202 (45%), Positives = 123/202 (60%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSE 60 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A+ ++ S Q ID+ NI +AT+ A+ A+ L+V P LIDG Sbjct: 61 KKRLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAIAGLRVQPDLVLIDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IP+ LP +A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 121 IPK-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|332360459|gb|EGJ38270.1| ribonuclease HII [Streptococcus sanguinis SK355] Length = 254 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 121/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+ Sbjct: 58 LRYEKELYQAGYLAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+++ A+ + I + ID+ NI++AT A+ A+ L + P LID + D+ Sbjct: 118 YKEVMDKALAVGIGLMDSEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKL--DVE 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAAS++AKVTRD+LM K+YP Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASVVAKVTRDKLMADYDKEYPGYDFAKNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 NGVTPIHRKTFEPVKSM 252 >gi|329921301|ref|ZP_08277739.1| ribonuclease HII [Lactobacillus iners SPIN 1401G] gi|328934593|gb|EGG31097.1| ribonuclease HII [Lactobacillus iners SPIN 1401G] Length = 250 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 94/197 (47%), Positives = 126/197 (63%), Gaps = 4/197 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E +N VAG+DEVGRG LAGPVV AA+ILD N +NDSKK++ KKR E Sbjct: 55 RFSYEKEFWCQN-KLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKKLTPKKRNE 113 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A+ +S+ A++ IDK NI++A A+ AV+ L+V P + L+D +P DL Sbjct: 114 LFPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVDAMDVPVDL 173 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +I+GDS S SIAAASI+AKV RDRLM + YP+Y F + GY TAKH +K Sbjct: 174 P--QLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGTAKHLSALK 231 Query: 190 EKGPSCIHRLTFRPLRN 206 + GP+ IHR +F P+ + Sbjct: 232 QYGPTPIHRFSFEPVSS 248 >gi|309809305|ref|ZP_07703174.1| ribonuclease HII [Lactobacillus iners SPIN 2503V10-D] gi|325911988|ref|ZP_08174390.1| ribonuclease HII [Lactobacillus iners UPII 143-D] gi|308170418|gb|EFO72442.1| ribonuclease HII [Lactobacillus iners SPIN 2503V10-D] gi|325476173|gb|EGC79337.1| ribonuclease HII [Lactobacillus iners UPII 143-D] Length = 250 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 94/197 (47%), Positives = 126/197 (63%), Gaps = 4/197 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E +N VAG+DEVGRG LAGPVV AA+ILD N +NDSKK++ KKR E Sbjct: 55 RFSYEKEFWCQN-KLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKKLTPKKRNE 113 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A+ +S+ A++ IDK NI++A A+ AV+ L+V P + L+D +P DL Sbjct: 114 LFPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVDAMDVPVDL 173 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +I+GDS S SIAAASI+AKV RDRLM + YP+Y F + GY TAKH +K Sbjct: 174 P--QLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGTAKHLSALK 231 Query: 190 EKGPSCIHRLTFRPLRN 206 + GP+ IHR +F P+ + Sbjct: 232 QYGPTPIHRFSFEPVSS 248 >gi|293608749|ref|ZP_06691052.1| ribonuclease HII [Acinetobacter sp. SH024] gi|292829322|gb|EFF87684.1| ribonuclease HII [Acinetobacter sp. SH024] Length = 189 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 83/185 (44%), Positives = 118/185 (63%), Gaps = 1/185 (0%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81 M +AG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A+ Sbjct: 1 MMFIAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAW 60 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 SI+ A+H ID+ NI +AT A+ AV+ L+ P+ ++DG IP+ + A++ GD+ Sbjct: 61 SIAEATHAEIDELNILQATFLAMQRAVDGLKTQPQKVIVDGNQIPKGIIIPCEAIVGGDA 120 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I+AASI+AKVTRDR M ++YP +GF H GYPT H + I G HR ++ Sbjct: 121 SHAEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAVHGVIDQHRRSY 180 Query: 202 RPLRN 206 P++ Sbjct: 181 APVKR 185 >gi|259046715|ref|ZP_05737116.1| ribonuclease HII [Granulicatella adiacens ATCC 49175] gi|259036611|gb|EEW37866.1| ribonuclease HII [Granulicatella adiacens ATCC 49175] Length = 256 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 89/210 (42%), Positives = 124/210 (59%), Gaps = 7/210 (3%) Query: 2 FCNSIPERPHFE----LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI 57 F HFE E ++K +AGIDEVGRG LAGPVV AA+IL G+ Sbjct: 46 FAKKAERAAHFEEMQSFERAAQQKGYRMIAGIDEVGRGPLAGPVVAAAVILPEGMEDIGL 105 Query: 58 NDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116 +DSKK+S K+REE++E I A+ I I IDK NI++A+ A+ A+E L P Sbjct: 106 DDSKKLSAKRREEIFEMIKEQAVAIGIGIVDAFTIDKINIYEASKVAMKRAIELLPEQPD 165 Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 LID + +P +IKGD+ S+SIAAASI+AK RD++M+ + YP YGF + Sbjct: 166 YLLIDAMRLDTGIP--QEGIIKGDAKSISIAAASIVAKEVRDQMMKDYEQLYPGYGFAQN 223 Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 GY T H + +++ GP+ IHR+TF P++ Sbjct: 224 AGYGTKAHIEGLEKLGPTPIHRMTFAPVKE 253 >gi|327474218|gb|EGF19625.1| ribonuclease HII [Streptococcus sanguinis SK408] Length = 254 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 120/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+ Sbjct: 58 LRYEKELYQAGYQRIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A+ + I + ID+ NI++AT A+ A+ L + P LID + D+ Sbjct: 118 YQAVMDKALAVGIGLMDSEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKL--DVE 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM K++P Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMTDYDKEFPGYDFAQNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 NGVTPIHRKTFEPVKSM 252 >gi|212710383|ref|ZP_03318511.1| hypothetical protein PROVALCAL_01443 [Providencia alcalifaciens DSM 30120] gi|212686965|gb|EEB46493.1| hypothetical protein PROVALCAL_01443 [Providencia alcalifaciens DSM 30120] Length = 196 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 89/183 (48%), Positives = 118/183 (64%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKRE+L+++I A+ I Sbjct: 10 LIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKREKLFDEIKEKALCWCI 69 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AVE L + P L+DG P+ L + AV+KGDS+ Sbjct: 70 GRAEPEEIDQLNILHATMLAMQRAVEGLLIKPEFVLVDGNRCPK-LDMPSQAVVKGDSLV 128 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RDR M K +P+YGF H GYPTA H + + E G + HR +F P Sbjct: 129 QEISAASILAKVVRDREMVELDKAFPEYGFAKHKGYPTAYHLEKLAEFGATEFHRKSFAP 188 Query: 204 LRN 206 +R Sbjct: 189 VRR 191 >gi|322387852|ref|ZP_08061460.1| ribonuclease HII [Streptococcus infantis ATCC 700779] gi|321141354|gb|EFX36851.1| ribonuclease HII [Streptococcus infantis ATCC 700779] Length = 259 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 87/195 (44%), Positives = 124/195 (63%), Gaps = 3/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + + +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI KK EE+ Sbjct: 58 LSYEKELYIQGINLIAGVDEVGRGPLAGPVVAAAVILPQNCKIKGLNDSKKIPKKKHEEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + +A+ I I + ID+ NI++AT A+ A+ L+ P LID + DLP Sbjct: 118 FQAVKENALAIGIGIMDNHVIDQVNIYEATKLAMNEAISQLEPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASIIAKVTRD++M +++P Y F + GY TAKH + I++ Sbjct: 176 ISQTSIIKGDANSLSIAAASIIAKVTRDKIMANYDEEFPGYDFAQNAGYGTAKHIEGIEK 235 Query: 191 KGPSCIHRLTFRPLR 205 G + IHR +F P++ Sbjct: 236 HGVTPIHRTSFEPIK 250 >gi|307244937|ref|ZP_07527034.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247112|ref|ZP_07529164.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307253891|ref|ZP_07535743.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258345|ref|ZP_07540086.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306854102|gb|EFM86310.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856361|gb|EFM88512.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306863095|gb|EFM95037.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867529|gb|EFM99376.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 186 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 87/183 (47%), Positives = 117/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+IL PNN G+ DSKK+S KKR L E+I + A+ S+ Sbjct: 2 IAGVDEVGRGPLVGAVVTAAVILAPNNPIEGLADSKKLSEKKRLLLAEEIKAKALCWSLG 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L + P L+DG IP LP A AVIKGDS+ Sbjct: 62 RAEPEEIDRLNILHATMLAMQRAVAGLNIQPDFVLVDGNRIPT-LPMPAQAVIKGDSLVA 120 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M +YP+YGF H GYPT H + +++ G + HR +F P+ Sbjct: 121 EISAASILAKVARDQEMAELDVQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKSFAPV 180 Query: 205 RNL 207 + + Sbjct: 181 KKI 183 >gi|315633618|ref|ZP_07888908.1| ribonuclease HII [Aggregatibacter segnis ATCC 33393] gi|315477660|gb|EFU68402.1| ribonuclease HII [Aggregatibacter segnis ATCC 33393] Length = 199 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 85/195 (43%), Positives = 120/195 (61%), Gaps = 1/195 (0%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 ++ V + +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L E Sbjct: 1 MDKFVYPQGYALIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLLLAE 60 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I A+ ++ A ID+ NI A++ A+ AV++L++ P L+DG IP +L Sbjct: 61 EIKQKALAWALGRAEPHEIDELNILHASMLAMERAVKHLKIQPHFVLVDGNRIPSNLSIP 120 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A AV+KGD++ I+AASI+AKV RD+ M ++YP Y F H GYPT H + I E G Sbjct: 121 AQAVVKGDALVAEISAASILAKVARDQEMLELDQQYPQYAFAQHKGYPTKLHLEKIAEFG 180 Query: 193 PSCIHRLTFRPLRNL 207 +R +F P++ L Sbjct: 181 LLPQYRRSFAPVKKL 195 >gi|50914225|ref|YP_060197.1| ribonuclease HII [Streptococcus pyogenes MGAS10394] gi|68053078|sp|Q5XC49|RNH2_STRP6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|50903299|gb|AAT87014.1| Ribonuclease HII [Streptococcus pyogenes MGAS10394] Length = 263 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 83/200 (41%), Positives = 121/200 (60%), Gaps = 6/200 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +K +AGIDEVGRG LAGPVV A +IL G+NDSKKI K E + Sbjct: 59 LSYEKALYKKGYQAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKAKHETI 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127 Y+ + A+ I I +Q ID+ NI++AT A+ A++ L+ P LID ++ Sbjct: 119 YQAVKEQALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTL-- 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D+ +++KGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T +H Q Sbjct: 177 DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQG 236 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 +K G + IHR +F P++++ Sbjct: 237 LKAYGITPIHRKSFEPVKSM 256 >gi|121726559|ref|ZP_01679808.1| ribonuclease HII [Vibrio cholerae V52] gi|262189887|ref|ZP_06048211.1| ribonuclease HII [Vibrio cholerae CT 5369-93] gi|121631012|gb|EAX63391.1| ribonuclease HII [Vibrio cholerae V52] gi|262034231|gb|EEY52647.1| ribonuclease HII [Vibrio cholerae CT 5369-93] Length = 206 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 123/202 (60%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDP+ G+NDSKK+S Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPHRPIMGLNDSKKLSE 60 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A+ ++ S Q ID+ NI +AT+ A+ AV L++ P LIDG Sbjct: 61 KKRLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IP+ LP +A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 121 IPK-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|161507470|ref|YP_001577424.1| ribonuclease HII [Lactobacillus helveticus DPC 4571] gi|172048283|sp|A8YV45|RNH2_LACH4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|160348459|gb|ABX27133.1| ribonuclease HII [Lactobacillus helveticus DPC 4571] Length = 250 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 94/198 (47%), Positives = 124/198 (62%), Gaps = 4/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E +K VAG+DEVGRG LAGPVV AA+I+D N +NDSKK+S +KR + Sbjct: 54 RFSYEKQFWQKG-ELVAGVDEVGRGPLAGPVVTAAVIIDHNFDLLEVNDSKKLSPEKRLQ 112 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY KI S A+ + I S ID+ NI++A A+ AV+ L V P + L+D ++P DL Sbjct: 113 LYPKILSEAVSVGIGVKSAAVIDQINIYEADRQAMAQAVKALDVKPNALLVDAMNVPVDL 172 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +IKGD+ S SIAAASI+AKV RD+LM K YP YGF + GY T +H +K Sbjct: 173 P--QIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFPRNAGYGTKEHIDALK 230 Query: 190 EKGPSCIHRLTFRPLRNL 207 + GP+ IHR TF P+ + Sbjct: 231 KYGPTPIHRKTFAPVSDF 248 >gi|33152162|ref|NP_873515.1| ribonuclease HII [Haemophilus ducreyi 35000HP] gi|39932311|sp|Q7VMF2|RNH2_HAEDU RecName: Full=Ribonuclease HII; Short=RNase HII gi|33148384|gb|AAP95904.1| ribonuclease HII [Haemophilus ducreyi 35000HP] Length = 197 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 83/188 (44%), Positives = 115/188 (61%), Gaps = 2/188 (1%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 N +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S KKR L +I A+ Sbjct: 8 HNANLIAGVDEVGRGPLVGAVVTAAVILDPQQPILGLADSKKLSEKKRILLATEIKQKAL 67 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 S+ A + ID+ NI AT+ A+ A+ L + P L+DG IP L A A++KG Sbjct: 68 CWSLGRAEAEEIDQLNILHATMLAMQRAINALTIQPDFVLVDGNRIP-SLNMPAQAIVKG 126 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS+ I+AASI+AKV RD M+I +++P+YGF H GYPT H + + + G + HR Sbjct: 127 DSLVAEISAASILAKVARDHEMQILDQQFPEYGFAQHKGYPTKLHIEKLAQFGATPFHRK 186 Query: 200 TFRPLRNL 207 +F P+R + Sbjct: 187 SFAPVRKI 194 >gi|260557476|ref|ZP_05829691.1| ribonuclease HII [Acinetobacter baumannii ATCC 19606] gi|260409102|gb|EEX02405.1| ribonuclease HII [Acinetobacter baumannii ATCC 19606] Length = 188 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 117/184 (63%), Gaps = 1/184 (0%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A+ S Sbjct: 1 MFVAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWS 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A+H ID+ NI +AT A+ AVE L+ P+ ++DG IP+ + A+I GD+ Sbjct: 61 IAEATHAEIDELNILQATFLAMQRAVEGLKTQPQKVIVDGNQIPKGIIIPCEAIIGGDAS 120 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M ++YP +GF H GYPT H + I G HR ++ Sbjct: 121 HAEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYA 180 Query: 203 PLRN 206 P++ Sbjct: 181 PVKR 184 >gi|240947970|ref|ZP_04752396.1| ribonuclease HII [Actinobacillus minor NM305] gi|240297726|gb|EER48187.1| ribonuclease HII [Actinobacillus minor NM305] Length = 196 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 88/184 (47%), Positives = 116/184 (63%), Gaps = 2/184 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 N +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR +L E+I + A+ Sbjct: 8 NAKLIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLSEKKRLKLAEEIKAKALS 67 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 S+ A + ID+ NI AT+ A+ AV L + P L+DG IP L A AV+KGD Sbjct: 68 WSLGRAEPEEIDQLNILHATMLAMQRAVAGLHIQPDFVLVDGNRIPT-LSMPAQAVVKGD 126 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+ I+AASI+AKV RD M K++P+YGF H GYPT H + + E G + HR + Sbjct: 127 SLVQEISAASILAKVARDLEMDELDKQFPEYGFAKHKGYPTKLHFEKLTELGATPFHRKS 186 Query: 201 FRPL 204 F P+ Sbjct: 187 FAPV 190 >gi|323466644|gb|ADX70331.1| Ribonuclease HII [Lactobacillus helveticus H10] Length = 250 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 95/198 (47%), Positives = 124/198 (62%), Gaps = 4/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E +K VAG+DEVGRG LAGPVV AA+I+D N +NDSKK+S +KR + Sbjct: 54 RFSYEKQFWQKG-ELVAGVDEVGRGPLAGPVVTAAVIIDHNFDLLEVNDSKKLSPEKRLQ 112 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY KI S AI + I S ID+ NI++A A+ AV+ L V P + L+D ++P DL Sbjct: 113 LYPKILSEAISVGIGVKSAAVIDQINIYEADRQAMAQAVKALDVKPNALLVDAMNVPVDL 172 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +IKGD+ S SIAAASI+AKV RD+LM K YP YGF + GY T +H +K Sbjct: 173 P--QIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFPRNAGYGTKEHIDALK 230 Query: 190 EKGPSCIHRLTFRPLRNL 207 + GP+ IHR TF P+ + Sbjct: 231 KYGPTPIHRKTFAPVSDF 248 >gi|331081970|ref|ZP_08331098.1| hypothetical protein HMPREF0992_00022 [Lachnospiraceae bacterium 6_1_63FAA] gi|330405565|gb|EGG85095.1| hypothetical protein HMPREF0992_00022 [Lachnospiraceae bacterium 6_1_63FAA] Length = 256 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 89/190 (46%), Positives = 122/190 (64%), Gaps = 4/190 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + GIDEVGRG AGPVV A+IL P+ +NDSK++S K RE+LY Sbjct: 60 EFEREYEHLGY--ICGIDEVGRGPFAGPVVAGAVILPPDCEILYVNDSKQLSEKMREQLY 117 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I A+ +++ AS Q ID+ NI +AT +A+ AV L V P+ L D +IP+ + Sbjct: 118 DEIMEKAVSVAVGYASPQRIDEINILQATYEAMREAVSKLAVTPQILLNDAVTIPQ-ITI 176 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S+SIAAASI+AKVTRDRLMR K P+YGF S+ GY + +H + IK+ Sbjct: 177 PQVPIIKGDAKSISIAAASIVAKVTRDRLMREYDKIMPEYGFASNKGYGSKEHIEAIKKY 236 Query: 192 GPSCIHRLTF 201 GP+ IHR +F Sbjct: 237 GPTPIHRRSF 246 >gi|71910696|ref|YP_282246.1| ribonuclease HII [Streptococcus pyogenes MGAS5005] gi|71853478|gb|AAZ51501.1| ribonuclease HII [Streptococcus pyogenes MGAS5005] Length = 263 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 83/200 (41%), Positives = 121/200 (60%), Gaps = 6/200 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +K +AGIDEVGRG LAGPVV A +IL G+NDSKKI K E + Sbjct: 59 LSYEKALYKKGYKAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKAKHETI 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127 Y+ + A+ I I +Q ID+ NI++AT A+ A++ L+ P LID ++ Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTL-- 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D+ +++KGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T +H Q Sbjct: 177 DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQG 236 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 +K G + IHR +F P++++ Sbjct: 237 LKAYGITPIHRKSFEPVKSM 256 >gi|309804177|ref|ZP_07698255.1| ribonuclease HII [Lactobacillus iners LactinV 11V1-d] gi|308163760|gb|EFO66029.1| ribonuclease HII [Lactobacillus iners LactinV 11V1-d] Length = 250 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 94/197 (47%), Positives = 126/197 (63%), Gaps = 4/197 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E +N VAG+DEVGRG LAGPVV AA+ILD N +NDSKK++ KKR E Sbjct: 55 RFSYEKKFWCQN-KLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKKLTPKKRNE 113 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A+ +S+ A++ IDK NI++A A+ AV+ L+V P + L+D +P DL Sbjct: 114 LFPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVDAMDVPVDL 173 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +I+GDS S SIAAASI+AKV RDRLM + YP+Y F + GY TAKH +K Sbjct: 174 P--QLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGTAKHLSALK 231 Query: 190 EKGPSCIHRLTFRPLRN 206 + GP+ IHR +F P+ + Sbjct: 232 QYGPTPIHRFSFEPVSS 248 >gi|296876487|ref|ZP_06900538.1| ribonuclease H [Streptococcus parasanguinis ATCC 15912] gi|296432480|gb|EFH18276.1| ribonuclease H [Streptococcus parasanguinis ATCC 15912] Length = 255 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 88/197 (44%), Positives = 123/197 (62%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + M +AG+DEVGRG LAGPVV AA+IL G+NDSKKI K +E+ Sbjct: 58 LAYEKECYARGMELIAGVDEVGRGPLAGPVVAAAVILPKACKIPGLNDSKKIPKSKHKEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YE + +A+ I I +Q ID+ NI++AT A+ A+ L+ P+ LID + DLP Sbjct: 118 YEAVLQNAVAIGIGIKDNQVIDQVNIYEATKLAMMEAIGQLEPQPQHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD++M K+YP Y F + GY TAKH + + Sbjct: 176 ISQISIIKGDANSLSIAAASIVAKVTRDQMMEEFDKEYPGYDFAQNAGYGTAKHLAGLDK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 236 LGVTPIHRRSFEPVKSM 252 >gi|253988139|ref|YP_003039495.1| ribonuclease HII [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779589|emb|CAQ82750.1| ribonuclease HII [Photorhabdus asymbiotica] Length = 196 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 90/183 (49%), Positives = 117/183 (63%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP+ G+ DSKK+S K+REELY +IT A+ S+ Sbjct: 11 LIAGVDEVGRGPLVGAVVTAAVILDPSRPIAGLADSKKLSEKRREELYLEITEKALCWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L + P LIDG PE LP A AVIKGD + Sbjct: 71 GRAEPEEIDQLNILHATMLAMQRAVAGLSISPEYVLIDGNRCPE-LPMPAQAVIKGDGLV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M + +P+YGF H GYPTA H + + G + HR +F P Sbjct: 130 AEISAASIVAKVTRDREMVELDQLFPEYGFAKHKGYPTALHLEKLVLLGATKHHRKSFAP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|90413543|ref|ZP_01221534.1| ribonuclease HII [Photobacterium profundum 3TCK] gi|90325475|gb|EAS41958.1| ribonuclease HII [Photobacterium profundum 3TCK] Length = 201 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 118/184 (64%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L+++I A+ S+ Sbjct: 15 LIAGVDEVGRGPLVGAVVTAAVILDPNNPIVGLTDSKKLSEKKRNVLFDEIKEKALAWSL 74 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + ID+ NI +AT+ A+ AV +L + P LIDG IP+ LP A AV+KGD Sbjct: 75 GRCEPEEIDELNILQATMVAMQRAVADLNIQPDFVLIDGNKIPQ-LPMAAQAVVKGDLRV 133 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASIIAKVTRDR M + ++P YGF H GYPT H + ++ G HR +F+P Sbjct: 134 AEISAASIIAKVTRDREMEVLDAQFPQYGFAKHKGYPTKAHFEALELHGAIEQHRKSFKP 193 Query: 204 LRNL 207 ++ + Sbjct: 194 VKRI 197 >gi|157692285|ref|YP_001486747.1| ribonuclease HII [Bacillus pumilus SAFR-032] gi|189043566|sp|A8FD70|RNH2_BACP2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|157681043|gb|ABV62187.1| ribonuclease HII [Bacillus pumilus SAFR-032] Length = 254 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 84/197 (42%), Positives = 120/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + + +AGIDE GRG LAGPVV AA+IL + + G+NDSK++S KKR Sbjct: 58 LQFENNAKAQGYTCIAGIDEAGRGPLAGPVVAAAVILKDDTVLLGLNDSKQLSEKKRLAY 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ I I ID+ NI++A+ A+ AVE L P LID ++P LP Sbjct: 118 YDLIQKEALDIGIGIVDAATIDEINIYEASRLAMVRAVEQLAHTPDYLLIDAMTLP--LP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S SIAA + IAKVTRD++M ++YP+Y F+ H GY T +H I+ Sbjct: 176 IHQENIIKGDAKSASIAAGACIAKVTRDQMMEEYGRQYPEYQFEKHKGYGTKEHLAAIQT 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHRL+F P++++ Sbjct: 236 HGAAPIHRLSFAPVKSV 252 >gi|184157471|ref|YP_001845810.1| ribonuclease HII [Acinetobacter baumannii ACICU] gi|239503491|ref|ZP_04662801.1| ribonuclease HII [Acinetobacter baumannii AB900] gi|332875053|ref|ZP_08442892.1| ribonuclease HII [Acinetobacter baumannii 6014059] gi|183209065|gb|ACC56463.1| Ribonuclease HII [Acinetobacter baumannii ACICU] gi|193076842|gb|ABO11570.2| RNAse HII [Acinetobacter baumannii ATCC 17978] gi|323517386|gb|ADX91767.1| ribonuclease HII [Acinetobacter baumannii TCDC-AB0715] gi|332736753|gb|EGJ67741.1| ribonuclease HII [Acinetobacter baumannii 6014059] Length = 188 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 84/184 (45%), Positives = 117/184 (63%), Gaps = 1/184 (0%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A+ S Sbjct: 1 MFVAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWS 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A+H ID+ NI +AT A+ AVE L+ P+ ++DG IP+ + A++ GD+ Sbjct: 61 IAEATHAEIDELNILQATFLAMQRAVEGLKTQPQKVIVDGNQIPKGIIIPCEAIVGGDAS 120 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M ++YP +GF H GYPT H + I G HR ++ Sbjct: 121 HAEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYA 180 Query: 203 PLRN 206 P++ Sbjct: 181 PVKR 184 >gi|307703411|ref|ZP_07640353.1| ribonuclease HII family protein [Streptococcus oralis ATCC 35037] gi|307622818|gb|EFO01813.1| ribonuclease HII family protein [Streptococcus oralis ATCC 35037] Length = 203 Score = 264 bits (676), Expect = 4e-69, Method: Composition-based stats. Identities = 87/197 (44%), Positives = 123/197 (62%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 2 LSYEKELYKQGLTLIAGVDEVGRGPLAGPVVAAAVILPKNCKIRGLNDSKKIPKKKHLEI 61 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y + A+ I I +Q ID+ NI++AT A+ A+ + P LID + +L Sbjct: 62 YHAVQDQALAIGIGIMDNQVIDQVNIYEATKLAMKEAISQVSPKPEHLLIDAMKL--ELS 119 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD+ SLSIAAASI+AKVTRD LM+ ++YP Y F ++ GY TAKH + +++ Sbjct: 120 IPQTAIIKGDANSLSIAAASIVAKVTRDELMKEYDQQYPGYDFTANAGYGTAKHLEGLEK 179 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++ L Sbjct: 180 LGVTPIHRTSFEPVKTL 196 >gi|325689693|gb|EGD31697.1| ribonuclease HII [Streptococcus sanguinis SK115] Length = 254 Score = 264 bits (676), Expect = 4e-69, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 121/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+ Sbjct: 58 LRYEKELYQAGYRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A+ + I ++ ID+ NI++AT A+ A+ L + P LID + D+ Sbjct: 118 YQAVMDKALAVGIGLMDNEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKL--DVE 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM K++P Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMTDYDKEFPGYDFAQNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 NGVTPIHRKTFEPIKSM 252 >gi|325687470|gb|EGD29491.1| ribonuclease HII [Streptococcus sanguinis SK72] Length = 254 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 121/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+ Sbjct: 58 LRYEKELYQAGHLAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+++ A+ + I + ID+ NI++AT A+ A+ L + P LID + D+ Sbjct: 118 YKEVMDKALAVGIGLMDSEMIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKL--DVE 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM K++P Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMTDYDKEFPGYDFAKNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 NGVTPIHRKTFEPVKSM 252 >gi|94990506|ref|YP_598606.1| ribonuclease HII [Streptococcus pyogenes MGAS10270] gi|166226660|sp|Q1JGT2|RNH2_STRPD RecName: Full=Ribonuclease HII; Short=RNase HII gi|94544014|gb|ABF34062.1| Ribonuclease HII [Streptococcus pyogenes MGAS10270] Length = 263 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 82/200 (41%), Positives = 122/200 (61%), Gaps = 6/200 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ +AGIDEVGRG LAGPVV A +IL + G+NDSKKI K E + Sbjct: 59 LSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKSKHETI 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127 Y+ + A+ I I +Q ID+ NI++AT A+ A++ L+ P LID ++ Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTL-- 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D+ +++KGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T +H Q Sbjct: 177 DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQG 236 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 +K G + IHR +F P++++ Sbjct: 237 LKAYGITPIHRKSFEPVKSM 256 >gi|56964049|ref|YP_175780.1| ribonuclease HII [Bacillus clausii KSM-K16] gi|73917599|sp|Q5WFP1|RNH2_BACSK RecName: Full=Ribonuclease HII; Short=RNase HII gi|56910292|dbj|BAD64819.1| ribonuclease HII [Bacillus clausii KSM-K16] Length = 259 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 83/194 (42%), Positives = 116/194 (59%), Gaps = 3/194 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E ++++ V G+DEVGRG LAGPV A IL + G+ DSKK+S KREE Sbjct: 57 WRYEQELKQRGYVAVCGVDEVGRGPLAGPVTACACILPDDFQLLGLTDSKKLSKAKREEY 116 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I+ A+ SI+S S ID+ NI +AT A+ A+ L L+D + D+P Sbjct: 117 AKMISEQAVAYSIASVSAAEIDEINILQATKKAMTKAINGLSQKTDHLLLDAVRL--DVP 174 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAA+S++AKV RDR M + YP YGFD+H GY TA H Q ++ Sbjct: 175 IAQTSLIKGDAKSLSIAASSVLAKVWRDRYMEELAQTYPGYGFDTHAGYGTASHLQALRT 234 Query: 191 KGPSCIHRLTFRPL 204 G + HR +FRP+ Sbjct: 235 YGMTPEHRKSFRPV 248 >gi|262279707|ref|ZP_06057492.1| ribonuclease H [Acinetobacter calcoaceticus RUH2202] gi|262260058|gb|EEY78791.1| ribonuclease H [Acinetobacter calcoaceticus RUH2202] Length = 188 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 83/184 (45%), Positives = 118/184 (64%), Gaps = 1/184 (0%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A+ S Sbjct: 1 MFIAGVDEAGRGPLVGSVVAAAVILDPNNPIVGLNDSKKLTEKKREKLFIEIQEKALAWS 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A+H ID+ NI +AT A+ AV+ L+ P+ ++DG IP+ + A+I GD+ Sbjct: 61 IAEATHGEIDELNILQATFLAMQRAVDGLKTQPQKVIVDGNQIPKGIIIPCEAIIGGDAS 120 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M+ ++YP +GF H GYPT H + I G HR ++ Sbjct: 121 HAEISAASILAKVTRDRQMQELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYA 180 Query: 203 PLRN 206 P++ Sbjct: 181 PVKR 184 >gi|22126997|ref|NP_670420.1| ribonuclease HII [Yersinia pestis KIM 10] gi|45442560|ref|NP_994099.1| ribonuclease HII [Yersinia pestis biovar Microtus str. 91001] gi|51597304|ref|YP_071495.1| ribonuclease HII [Yersinia pseudotuberculosis IP 32953] gi|108806531|ref|YP_650447.1| ribonuclease HII [Yersinia pestis Antiqua] gi|108813102|ref|YP_648869.1| ribonuclease HII [Yersinia pestis Nepal516] gi|145598936|ref|YP_001163012.1| ribonuclease HII [Yersinia pestis Pestoides F] gi|149366941|ref|ZP_01888974.1| ribonuclease HII [Yersinia pestis CA88-4125] gi|153946846|ref|YP_001400011.1| ribonuclease HII [Yersinia pseudotuberculosis IP 31758] gi|162421227|ref|YP_001607758.1| ribonuclease HII [Yersinia pestis Angola] gi|165927101|ref|ZP_02222933.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. F1991016] gi|165939835|ref|ZP_02228375.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. IP275] gi|166011925|ref|ZP_02232823.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. E1979001] gi|166211521|ref|ZP_02237556.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. B42003004] gi|167400133|ref|ZP_02305651.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419475|ref|ZP_02311228.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425410|ref|ZP_02317163.1| ribonuclease HII [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470459|ref|ZP_02335163.1| ribonuclease HII [Yersinia pestis FV-1] gi|186896409|ref|YP_001873521.1| ribonuclease HII [Yersinia pseudotuberculosis PB1/+] gi|218928226|ref|YP_002346101.1| ribonuclease HII [Yersinia pestis CO92] gi|229837765|ref|ZP_04457925.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis Pestoides A] gi|229840987|ref|ZP_04461146.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843088|ref|ZP_04463238.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis biovar Orientalis str. India 195] gi|229903545|ref|ZP_04518658.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis Nepal516] gi|270487326|ref|ZP_06204400.1| ribonuclease HII [Yersinia pestis KIM D27] gi|294503075|ref|YP_003567137.1| ribonuclease HII [Yersinia pestis Z176003] gi|29427900|sp|Q8ZH54|RNH2_YERPE RecName: Full=Ribonuclease HII; Short=RNase HII gi|73917839|sp|Q667K3|RNH2_YERPS RecName: Full=Ribonuclease HII; Short=RNase HII gi|122980006|sp|Q1CFG1|RNH2_YERPN RecName: Full=Ribonuclease HII; Short=RNase HII gi|123245970|sp|Q1CAM0|RNH2_YERPA RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226669|sp|A4TL77|RNH2_YERPP RecName: Full=Ribonuclease HII; Short=RNase HII gi|166991071|sp|A7FFI3|RNH2_YERP3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|238687277|sp|A9R382|RNH2_YERPG RecName: Full=Ribonuclease HII; Short=RNase HII gi|238691336|sp|B2JZ20|RNH2_YERPB RecName: Full=Ribonuclease HII; Short=RNase HII gi|21960043|gb|AAM86671.1|AE013913_1 RNAse HII [Yersinia pestis KIM 10] gi|45437425|gb|AAS62976.1| ribonuclease HII [Yersinia pestis biovar Microtus str. 91001] gi|51590586|emb|CAH22227.1| ribonuclease HII [Yersinia pseudotuberculosis IP 32953] gi|108776750|gb|ABG19269.1| RNase HII [Yersinia pestis Nepal516] gi|108778444|gb|ABG12502.1| RNase HII [Yersinia pestis Antiqua] gi|115346837|emb|CAL19723.1| ribonuclease HII [Yersinia pestis CO92] gi|145210632|gb|ABP40039.1| RNase HII [Yersinia pestis Pestoides F] gi|149290555|gb|EDM40631.1| ribonuclease HII [Yersinia pestis CA88-4125] gi|152958341|gb|ABS45802.1| ribonuclease HII [Yersinia pseudotuberculosis IP 31758] gi|162354042|gb|ABX87990.1| ribonuclease HII [Yersinia pestis Angola] gi|165912238|gb|EDR30875.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. IP275] gi|165920997|gb|EDR38221.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. F1991016] gi|165989191|gb|EDR41492.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. E1979001] gi|166207292|gb|EDR51772.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. B42003004] gi|166962216|gb|EDR58237.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050841|gb|EDR62249.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055810|gb|EDR65594.1| ribonuclease HII [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186699435|gb|ACC90064.1| ribonuclease HII/HIII [Yersinia pseudotuberculosis PB1/+] gi|229679315|gb|EEO75418.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis Nepal516] gi|229689964|gb|EEO82023.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis biovar Orientalis str. India 195] gi|229697353|gb|EEO87400.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704142|gb|EEO91154.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis Pestoides A] gi|262361113|gb|ACY57834.1| ribonuclease HII [Yersinia pestis D106004] gi|262365353|gb|ACY61910.1| ribonuclease HII [Yersinia pestis D182038] gi|270335830|gb|EFA46607.1| ribonuclease HII [Yersinia pestis KIM D27] gi|294353534|gb|ADE63875.1| ribonuclease HII [Yersinia pestis Z176003] gi|320014192|gb|ADV97763.1| ribonuclease HII [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 198 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 86/184 (46%), Positives = 116/184 (63%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDPN G+ DSKK+S K+R LY++IT A+ S+ Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVILDPNRPIVGLADSKKLSEKRRLSLYDEITEKALSWSL 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L ++P LIDG P+ L + AV+KGDS Sbjct: 72 GRAEPEEIDQLNILHATMLAMQRAVSGLHIVPDYVLIDGNRCPK-LQMPSLAVVKGDSRV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M +P+YGF H GYPTA H + + G + HR +F P Sbjct: 131 AEISAASILAKVTRDREMTELDLLFPEYGFAQHKGYPTAFHLEKLAALGATVHHRRSFGP 190 Query: 204 LRNL 207 ++ + Sbjct: 191 VKRV 194 >gi|322411764|gb|EFY02672.1| ribonuclease HII [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 256 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 81/200 (40%), Positives = 121/200 (60%), Gaps = 6/200 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ +AGIDEVGRG LAGPVV A +IL + G+NDSKKI K E + Sbjct: 59 LSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHFKIKGLNDSKKIPKAKHETI 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127 Y+ + A+ I I +Q ID+ NI++AT A+ A++ L+ P LID ++ Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTL-- 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D+ ++IKGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T +H Sbjct: 177 DIAIPQQSIIKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLDG 236 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 ++ G + IHR +F P++++ Sbjct: 237 LRTHGITPIHRKSFEPIKSM 256 >gi|229522192|ref|ZP_04411609.1| ribonuclease HII [Vibrio cholerae TM 11079-80] gi|229341117|gb|EEO06122.1| ribonuclease HII [Vibrio cholerae TM 11079-80] Length = 206 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 122/202 (60%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSE 60 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A+ ++ S Q ID+ NI +AT+ A+ AV L++ P LIDG Sbjct: 61 KKRLALFPEIQEKALAWAVGRCSTQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 P+ LP +A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 121 TPK-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|312883822|ref|ZP_07743541.1| ribonuclease HII [Vibrio caribbenthicus ATCC BAA-2122] gi|309368571|gb|EFP96104.1| ribonuclease HII [Vibrio caribbenthicus ATCC BAA-2122] Length = 202 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 90/186 (48%), Positives = 112/186 (60%), Gaps = 2/186 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S KKR L+ +I A+ Sbjct: 13 GYQSIAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSEKKRLALFPEIKEKALA 72 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 SI S IDK NI AT+ A+ A+ENL ++P ALIDG P LP A +V+KGD Sbjct: 73 WSIGRCSPVEIDKLNILHATMVAMQRAIENLNIMPDLALIDGNRCPH-LPMAAQSVVKGD 131 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 I+AASIIAKV RD M YP+YGF H GYPT H I+ G HR + Sbjct: 132 LRVAEISAASIIAKVVRDSEMAQLDSLYPEYGFAQHKGYPTKAHLNAIEAHGVIEQHRKS 191 Query: 201 FRPLRN 206 F+P++ Sbjct: 192 FKPVKR 197 >gi|153825313|ref|ZP_01977980.1| ribonuclease HII [Vibrio cholerae MZO-2] gi|183179455|ref|ZP_02957666.1| ribonuclease HII [Vibrio cholerae MZO-3] gi|229513888|ref|ZP_04403350.1| ribonuclease HII [Vibrio cholerae TMA 21] gi|297580889|ref|ZP_06942814.1| ribonuclease HII [Vibrio cholerae RC385] gi|149740997|gb|EDM55066.1| ribonuclease HII [Vibrio cholerae MZO-2] gi|183012866|gb|EDT88166.1| ribonuclease HII [Vibrio cholerae MZO-3] gi|229349069|gb|EEO14026.1| ribonuclease HII [Vibrio cholerae TMA 21] gi|297534715|gb|EFH73551.1| ribonuclease HII [Vibrio cholerae RC385] Length = 206 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 92/202 (45%), Positives = 122/202 (60%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSE 60 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A+ ++ S Q ID+ NI +AT+ A+ AV L++ P LIDG Sbjct: 61 KKRLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IP+ LP A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 121 IPK-LPMAAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|77457342|ref|YP_346847.1| ribonuclease HII [Pseudomonas fluorescens Pf0-1] gi|97189197|sp|Q3KH98|RNH2_PSEPF RecName: Full=Ribonuclease HII; Short=RNase HII gi|77381345|gb|ABA72858.1| ribonuclease HII [Pseudomonas fluorescens Pf0-1] Length = 213 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 97/207 (46%), Positives = 127/207 (61%), Gaps = 6/207 (2%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 M S+ F L A V E VAG+DEVGRG L G VV AA+ILDPN G+NDS Sbjct: 1 MSKTSMQMGLDFTLVAEVEE----LVAGVDEVGRGPLCGAVVTAAVILDPNRPILGLNDS 56 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK++ KRE+LY++I A+ I+ A + ID+ NI AT+ A+ AV L + P+ A+ Sbjct: 57 KKLTEAKREKLYDEICEKALSWCIARAEVEEIDELNILHATMLAMQRAVAGLHIQPKLAM 116 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 IDG P+ LP ++ AV+KGDS +IAAASI+AKV+RDR M YP YG H GY Sbjct: 117 IDGNRCPK-LPMRSEAVVKGDSKVPAIAAASILAKVSRDREMAAFELIYPGYGISGHKGY 175 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRN 206 PT H + + GP+ IHR +F P+R Sbjct: 176 PTPVHLEALVRLGPTPIHRRSFAPVRQ 202 >gi|311030147|ref|ZP_07708237.1| Ribonuclease H [Bacillus sp. m3-13] Length = 256 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 82/195 (42%), Positives = 121/195 (62%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + +K +AGIDEVGRG LAGPVV AA+IL + G+ DSKK++ +KRE + Sbjct: 62 YERPLWDKGCRYIAGIDEVGRGPLAGPVVAAAVILPEDFHLPGLTDSKKLNAQKREHFFR 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 + AI I + ID+ NI++AT A+ AV+NL P LID + DL + Sbjct: 122 YVKEHAISYGIGIIDSREIDQVNIYEATKLAMVQAVKNLHHTPEHLLIDAMKL--DLDIE 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SIAAAS++AK TRD M+ +++PDYGFD ++GY T +H ++E G Sbjct: 180 QTSIIKGDATSISIAAASVLAKETRDTYMKNLAQEFPDYGFDKNMGYGTPEHLLALQETG 239 Query: 193 PSCIHRLTFRPLRNL 207 + HR +F P++ + Sbjct: 240 VTREHRQSFSPVKEM 254 >gi|319406927|emb|CBI80564.1| Ribonuclease HII [Bartonella sp. 1-1C] Length = 212 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 104/208 (50%), Positives = 144/208 (69%), Gaps = 4/208 (1%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 MF S+ +P+F E +++K + +AG+DEVGRG LAGPVV AA++LD + IP G+NDS Sbjct: 1 MFNVSL--QPNFSYELDLQKKGFFYIAGVDEVGRGPLAGPVVTAAVVLDKDRIPEGLNDS 58 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK+S ++R LY +I +A+ +S++S + IDK NI KATL+A+ H + L + AL Sbjct: 59 KKLSSQQRNRLYYEILRNALAVSVASLCARTIDKSNIRKATLEAMRHCITGLAISAHYAL 118 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 IDGR IP +LPC A A+IKGD S+SIAAASIIAKV RDR+M+ A + Y +YG + HVGY Sbjct: 119 IDGRDIPSNLPCPAVALIKGDQSSVSIAAASIIAKVIRDRMMQYAGRVYQNYGLEKHVGY 178 Query: 180 PTAKHQQVIKEKGPS-CIHRLTFRPLRN 206 T H+ I + GP +HR +F PL+ Sbjct: 179 GTVAHRAAIDKYGPIVRLHRYSFSPLKE 206 >gi|206890782|ref|YP_002248663.1| ribonuclease HII [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742720|gb|ACI21777.1| ribonuclease HII [Thermodesulfovibrio yellowstonii DSM 11347] Length = 201 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 89/198 (44%), Positives = 117/198 (59%), Gaps = 1/198 (0%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F + R + +AGIDE GRG LAGPVV A + + GI DSK++SH++RE L Sbjct: 4 FAFDESFRLQGYNLIAGIDEAGRGCLAGPVVAACVSFRDSVFIEGIKDSKELSHEQRESL 63 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +++I A + I ID+ NI +AT A+ A ENL LID +P L Sbjct: 64 FQEIIKHAFVGIGIVDVDLIDRVNILEATRLAMMEAFENLGREIELLLIDAVELPA-LKV 122 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A+IKGD S SIA+ASI+AKVTRDR+MR H+ YP YGFD H GY T +H +K+ Sbjct: 123 DQKALIKGDRKSASIASASIVAKVTRDRIMRQYHEAYPMYGFDKHKGYGTKEHLNALKKF 182 Query: 192 GPSCIHRLTFRPLRNLSV 209 GP IHR +F P+R L + Sbjct: 183 GPCPIHRKSFSPVRELML 200 >gi|229528751|ref|ZP_04418141.1| ribonuclease HII [Vibrio cholerae 12129(1)] gi|229332525|gb|EEN98011.1| ribonuclease HII [Vibrio cholerae 12129(1)] Length = 206 Score = 264 bits (676), Expect = 6e-69, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 123/202 (60%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDP+ G+NDSKK+S Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPHRPIVGLNDSKKLSE 60 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A+ ++ S Q ID+ NI +AT+ A+ AV L++ P LIDG Sbjct: 61 KKRLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IP+ LP +A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 121 IPK-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|312959406|ref|ZP_07773923.1| ribonuclease HII [Pseudomonas fluorescens WH6] gi|311286123|gb|EFQ64687.1| ribonuclease HII [Pseudomonas fluorescens WH6] Length = 210 Score = 264 bits (676), Expect = 6e-69, Method: Composition-based stats. Identities = 89/191 (46%), Positives = 120/191 (62%), Gaps = 2/191 (1%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 + + VAG+DEVGRG L G VV AA+ILDPN G+NDSKK++ +RE+LY++I Sbjct: 10 SLVAQAHELVAGVDEVGRGPLCGAVVTAAVILDPNRPILGLNDSKKLTEARREKLYDEIC 69 Query: 77 SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 A+ I+ A + ID+ NI AT+ A+ AVE L + P+ A+IDG P+ L + A Sbjct: 70 EKALSWHIARAEVEEIDQLNILHATMLAMQRAVEGLHITPKMAMIDGNRCPK-LAMPSEA 128 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V+KGDS +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ Sbjct: 129 VVKGDSKVPAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTP 188 Query: 196 IHRLTFRPLRN 206 IHR +F P+R Sbjct: 189 IHRRSFAPVRQ 199 >gi|296133539|ref|YP_003640786.1| Ribonuclease H [Thermincola sp. JR] gi|296032117|gb|ADG82885.1| Ribonuclease H [Thermincola potens JR] Length = 259 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 87/196 (44%), Positives = 116/196 (59%), Gaps = 2/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + VAGIDE GRG LAGPVV AA+IL ++ G+NDSKK+S +KR EL Sbjct: 62 LKYERELWAAGYTLVAGIDEAGRGPLAGPVVAAAVILKQGDLIEGLNDSKKLSPEKRSEL 121 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 E I A+ I S ID+ NI++A L A+ AV + + P L+D +IP + Sbjct: 122 EEVIKERAVAYGIGIVSETEIDEMNIYQAALKAMRIAVAKISLKPEYLLVDAVTIP-GVS 180 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A++ GD++S SIAAASI+AK TRDR+M YP YGF H GY TA H + +K+ Sbjct: 181 IPQKAIVHGDALSCSIAAASILAKETRDRIMTELDALYPHYGFAQHKGYATAFHLEALKK 240 Query: 191 KGPSCIHRLTFRPLRN 206 GP +HR TF +R Sbjct: 241 YGPCPVHRKTFGQVRQ 256 >gi|260549960|ref|ZP_05824175.1| ribonuclease HII family protein [Acinetobacter sp. RUH2624] gi|260406952|gb|EEX00430.1| ribonuclease HII family protein [Acinetobacter sp. RUH2624] Length = 188 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 83/184 (45%), Positives = 117/184 (63%), Gaps = 1/184 (0%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A+ S Sbjct: 1 MFVAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWS 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A+H ID+ NI +AT A+ AV+ L+ P+ ++DG IP+ + A++ GD+ Sbjct: 61 IAEATHAEIDELNILQATFLAMQRAVDGLKTQPQKVIVDGNQIPKGIIIPCEAIVGGDAS 120 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M ++YP +GF H GYPT H + I G HR ++ Sbjct: 121 HAEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYA 180 Query: 203 PLRN 206 P++ Sbjct: 181 PVKR 184 >gi|167769415|ref|ZP_02441468.1| hypothetical protein ANACOL_00745 [Anaerotruncus colihominis DSM 17241] gi|167668383|gb|EDS12513.1| hypothetical protein ANACOL_00745 [Anaerotruncus colihominis DSM 17241] Length = 200 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 115/199 (57%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +E E R + V G+DE GRG LAG V AA+IL P G+NDSKK+S K+RE L Sbjct: 4 YEFEQAARREGYAAVCGVDEAGRGPLAGDVYAAAVILPPGLELAGVNDSKKLSEKRREAL 63 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y IT A ++SAS + I++ NI +A+L A+ AVE L V AL+DG P Sbjct: 64 YGVITEQAAAWCVASASVEEIERLNILQASLLAMRRAVEGLGVRADFALVDGNRDPHFEG 123 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++ GD S S+AAASI+AKVTRDR M +YP YGF+ H GY T H++ + + Sbjct: 124 VPCKTIVGGDGKSASVAAASILAKVTRDRYMEQLAARYPQYGFERHKGYGTQAHREALLK 183 Query: 191 KGPSCIHRLTFRPLRNLSV 209 GP HR F LR L + Sbjct: 184 YGPCPAHRKLF--LRRLGL 200 >gi|154686022|ref|YP_001421183.1| ribonuclease HII [Bacillus amyloliquefaciens FZB42] gi|166225167|sp|A7Z4M6|RNH2_BACA2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|154351873|gb|ABS73952.1| RnhB [Bacillus amyloliquefaciens FZB42] Length = 255 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 85/195 (43%), Positives = 117/195 (60%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + +K +AG+DE GRG LAGPVV A+IL G+ DSKK+S KK EE Y Sbjct: 61 AYERLSSKKGFRLIAGVDEAGRGPLAGPVVAGAVILPAECEILGLTDSKKLSEKKLEEYY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +IT A + + ID+ NI++A A+ AV L P L+D ++P D+P Sbjct: 121 SRITEEAAAVGVGIVHADVIDRINIYEAARLAMVKAVNALTETPDYLLVDAMTLPLDIP- 179 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +VIKGD+ S+SIAA + IAKVTRDRLM K YP YGF+ + GY T +H + ++ Sbjct: 180 -QSSVIKGDAKSVSIAAGACIAKVTRDRLMAEYAKTYPMYGFEKNKGYGTKEHLEALQAY 238 Query: 192 GPSCIHRLTFRPLRN 206 GP+ IHR TF P+++ Sbjct: 239 GPTTIHRKTFAPVQS 253 >gi|251782421|ref|YP_002996723.1| ribonuclease HII [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391050|dbj|BAH81509.1| ribonuclease HII [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 256 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 82/200 (41%), Positives = 120/200 (60%), Gaps = 6/200 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +K +AGIDEVGRG LAGPVV A +IL G+NDSKKI K E + Sbjct: 59 LSYEKALYKKGYQAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKAKHETI 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127 Y+ + A+ I I +Q ID+ NI++AT A+ A++ L+ P LID ++ Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTL-- 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D+ ++IKGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T +H Sbjct: 177 DIAIPQQSIIKGDANSLSIAAASIVAKVTRDQMMANYERIFPGYGFAKNSGYGTKEHLDG 236 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 ++ G + IHR +F P++++ Sbjct: 237 LRTHGITPIHRKSFEPIKSM 256 >gi|139473750|ref|YP_001128466.1| ribonuclease HII [Streptococcus pyogenes str. Manfredo] gi|209559442|ref|YP_002285914.1| ribonuclease HII [Streptococcus pyogenes NZ131] gi|166226662|sp|A2REG0|RNH2_STRPG RecName: Full=Ribonuclease HII; Short=RNase HII gi|238056782|sp|B5XLK7|RNH2_STRPZ RecName: Full=Ribonuclease HII; Short=RNase HII gi|134271997|emb|CAM30235.1| ribonuclease HII [Streptococcus pyogenes str. Manfredo] gi|209540643|gb|ACI61219.1| Ribonuclease HII [Streptococcus pyogenes NZ131] Length = 263 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 82/200 (41%), Positives = 122/200 (61%), Gaps = 6/200 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ +AGIDEVGRG LAGPVV A +IL + G+NDSKKI K E + Sbjct: 59 LSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKSKHETI 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127 Y+ + A+ I I +Q ID+ NI++AT A+ A++ L+ P LID ++ Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTL-- 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D+ +++KGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T +H Q Sbjct: 177 DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQG 236 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 +K G + IHR +F P++++ Sbjct: 237 LKAYGITPIHRKSFEPVKSM 256 >gi|227524479|ref|ZP_03954528.1| ribonuclease HII [Lactobacillus hilgardii ATCC 8290] gi|227088349|gb|EEI23661.1| ribonuclease HII [Lactobacillus hilgardii ATCC 8290] Length = 255 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 81/200 (40%), Positives = 118/200 (59%), Gaps = 3/200 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F+ E + + VAG+DEVGRG LAGPVV A IL + +NDSK+++ + R Sbjct: 57 QSRFKYERSFWHRGVNYVAGVDEVGRGPLAGPVVACATILPRDFDLIQVNDSKQLTPEIR 116 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 L +I AI I + ++ ID+ NI++AT A+ AV NL P ++D IP Sbjct: 117 ARLAPQIKREAISIGLGLVDNKGIDRLNIYEATRVAMKQAVNNLTQQPDEIIVDAMQIP- 175 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +P +IKGD+ S+S++AASI+AKV RD LM ++YP+Y F + GY T KH Sbjct: 176 -VPIHQTRLIKGDAKSISVSAASIVAKVYRDNLMDQYAQQYPEYDFRHNAGYGTTKHLSA 234 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 +K+ G + IHR TF P++N Sbjct: 235 LKKYGATPIHRKTFAPIKNF 254 >gi|116492734|ref|YP_804469.1| ribonuclease HII [Pediococcus pentosaceus ATCC 25745] gi|122265802|sp|Q03FJ5|RNH2_PEDPA RecName: Full=Ribonuclease HII; Short=RNase HII gi|116102884|gb|ABJ68027.1| Ribonuclease HII [Pediococcus pentosaceus ATCC 25745] Length = 255 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 95/197 (48%), Positives = 124/197 (62%), Gaps = 3/197 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F LE + + VAGIDEVGRG LAGPVV A+++LD +NDSK++S + R Sbjct: 55 QARFTLERELWSNGIDLVAGIDEVGRGCLAGPVVTASVVLDETFDLIDVNDSKQLSSELR 114 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 EELY KI + A+ + I S+Q ID+ NI AT A+ AV NL V P+ LID + P Sbjct: 115 EELYAKILTEAVSVGIGVCSNQKIDEVNILNATKLAMREAVGNLNVTPQHLLIDAVNAPI 174 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 ++P + KGDS S+SIAAASI+AKV RD LMR YP YGFD +VGY T +H + Sbjct: 175 EIPKTV--MFKGDSKSISIAAASIVAKVYRDHLMRSYAALYPGYGFDKNVGYGTKQHIEG 232 Query: 188 IKEKGPSCIHRLTFRPL 204 +K G + IHR TF P+ Sbjct: 233 LKTYGVTPIHRQTFEPV 249 >gi|169633130|ref|YP_001706866.1| ribonuclease HII [Acinetobacter baumannii SDF] gi|169796619|ref|YP_001714412.1| ribonuclease HII [Acinetobacter baumannii AYE] gi|213156183|ref|YP_002318603.1| ribonuclease H [Acinetobacter baumannii AB0057] gi|215484081|ref|YP_002326306.1| Ribonuclease HII family protein [Acinetobacter baumannii AB307-0294] gi|301347289|ref|ZP_07228030.1| ribonuclease HII [Acinetobacter baumannii AB056] gi|301510211|ref|ZP_07235448.1| ribonuclease HII [Acinetobacter baumannii AB058] gi|301597198|ref|ZP_07242206.1| ribonuclease HII [Acinetobacter baumannii AB059] gi|332853559|ref|ZP_08434823.1| ribonuclease HII [Acinetobacter baumannii 6013150] gi|332868424|ref|ZP_08438155.1| ribonuclease HII [Acinetobacter baumannii 6013113] gi|169149546|emb|CAM87435.1| RNAse HII [Acinetobacter baumannii AYE] gi|169151922|emb|CAP00776.1| RNAse HII [Acinetobacter baumannii] gi|213055343|gb|ACJ40245.1| ribonuclease H [Acinetobacter baumannii AB0057] gi|213987268|gb|ACJ57567.1| Ribonuclease HII family protein [Acinetobacter baumannii AB307-0294] gi|332728592|gb|EGJ59964.1| ribonuclease HII [Acinetobacter baumannii 6013150] gi|332733423|gb|EGJ64606.1| ribonuclease HII [Acinetobacter baumannii 6013113] Length = 188 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 83/184 (45%), Positives = 117/184 (63%), Gaps = 1/184 (0%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A+ S Sbjct: 1 MFVAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWS 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A+H ID+ NI +AT A+ AV+ L+ P+ ++DG IP+ + A++ GD+ Sbjct: 61 IAEATHAEIDELNILQATFLAMQRAVDGLKTQPQKVIVDGNQIPKGIVIPCEAIVGGDAS 120 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M ++YP +GF H GYPT H + I G HR ++ Sbjct: 121 HAEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYA 180 Query: 203 PLRN 206 P++ Sbjct: 181 PVKR 184 >gi|291546334|emb|CBL19442.1| Ribonuclease HII [Ruminococcus sp. SR1/5] Length = 251 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 90/182 (49%), Positives = 121/182 (66%), Gaps = 2/182 (1%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 +++ + GIDEVGRG LAGPVV A+IL + +NDSKK++ KKREELY+ I A+ Sbjct: 66 EHLGYLCGIDEVGRGPLAGPVVACAVILPKDCDILWLNDSKKLTAKKREELYDVILEGAV 125 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 + I AS + ID+ NI +AT +A+ AV L V P+ L D +IPE + +IKG Sbjct: 126 SVGIGMASPERIDEINILQATYEAMRQAVSRLSVQPQLLLNDAVTIPE-IQIPQVPIIKG 184 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D+ S+SIAAASI+AKVTRDR+M K P+YGF S+ GY +A H + +K+ GPS IHR Sbjct: 185 DAKSVSIAAASIVAKVTRDRMMEEYDKVLPEYGFASNKGYGSAAHIEALKKYGPSPIHRK 244 Query: 200 TF 201 TF Sbjct: 245 TF 246 >gi|167624881|ref|YP_001675175.1| ribonuclease HII [Shewanella halifaxensis HAW-EB4] gi|189043659|sp|B0TP69|RNH2_SHEHH RecName: Full=Ribonuclease HII; Short=RNase HII gi|167354903|gb|ABZ77516.1| Ribonuclease H [Shewanella halifaxensis HAW-EB4] Length = 203 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 92/185 (49%), Positives = 121/185 (65%), Gaps = 2/185 (1%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81 + AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKRE L+E+I A+ + Sbjct: 17 IGHYAGVDEVGRGPLIGNVVTAAVILDPNNPIEGLNDSKKLSEKKRELLFEQIQQKALSV 76 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S+ SA+ ID+ NI AT+ A+ AV L + P S L+DG P D ++ A+IKGD Sbjct: 77 SVGSATPAEIDELNILHATMLAMQRAVAGLNIKPTSVLVDGNRTP-DFGVESHAIIKGDG 135 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + +I+AASIIAKV RDR M +YP+YGFD H GYPT H + + + G HR +F Sbjct: 136 LIDAISAASIIAKVVRDREMDALALQYPEYGFDKHKGYPTKAHFEALTQHGVLPEHRKSF 195 Query: 202 RPLRN 206 RP+R Sbjct: 196 RPVRE 200 >gi|319897459|ref|YP_004135656.1| ribonuclease hii, degrades RNA of DNA-RNA hybrids [Haemophilus influenzae F3031] gi|317432965|emb|CBY81332.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Haemophilus influenzae F3031] Length = 197 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 85/187 (45%), Positives = 118/187 (63%), Gaps = 1/187 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I A+ Sbjct: 6 QGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKAL 65 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+ L A A++KG Sbjct: 66 AWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKYLDIPAQAIVKG 125 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DSI I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR Sbjct: 126 DSIVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRR 185 Query: 200 TFRPLRN 206 +F P++ Sbjct: 186 SFAPVKK 192 >gi|15642244|ref|NP_231877.1| ribonuclease HII [Vibrio cholerae O1 biovar El Tor str. N16961] gi|147673627|ref|YP_001217761.1| ribonuclease HII [Vibrio cholerae O395] gi|153817064|ref|ZP_01969731.1| ribonuclease HII [Vibrio cholerae NCTC 8457] gi|153820817|ref|ZP_01973484.1| ribonuclease HII [Vibrio cholerae B33] gi|227082370|ref|YP_002810921.1| ribonuclease HII [Vibrio cholerae M66-2] gi|229507680|ref|ZP_04397185.1| ribonuclease HII [Vibrio cholerae BX 330286] gi|229512125|ref|ZP_04401604.1| ribonuclease HII [Vibrio cholerae B33] gi|229519260|ref|ZP_04408703.1| ribonuclease HII [Vibrio cholerae RC9] gi|229607184|ref|YP_002877832.1| ribonuclease HII [Vibrio cholerae MJ-1236] gi|254849376|ref|ZP_05238726.1| ribonuclease HII [Vibrio cholerae MO10] gi|255747057|ref|ZP_05421002.1| ribonuclease HII [Vibrio cholera CIRS 101] gi|262161398|ref|ZP_06030508.1| ribonuclease HII [Vibrio cholerae INDRE 91/1] gi|298500379|ref|ZP_07010184.1| ribonuclease HII [Vibrio cholerae MAK 757] gi|12644303|sp|P52021|RNH2_VIBCH RecName: Full=Ribonuclease HII; Short=RNase HII gi|172047613|sp|A5F626|RNH2_VIBC3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|254808006|sp|C3LQ18|RNH2_VIBCM RecName: Full=Ribonuclease HII; Short=RNase HII gi|9656806|gb|AAF95390.1| ribonuclease HII [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126512332|gb|EAZ74926.1| ribonuclease HII [Vibrio cholerae NCTC 8457] gi|126521609|gb|EAZ78832.1| ribonuclease HII [Vibrio cholerae B33] gi|146315510|gb|ABQ20049.1| ribonuclease HII [Vibrio cholerae O395] gi|227010258|gb|ACP06470.1| ribonuclease HII [Vibrio cholerae M66-2] gi|227014142|gb|ACP10352.1| ribonuclease HII [Vibrio cholerae O395] gi|229343949|gb|EEO08924.1| ribonuclease HII [Vibrio cholerae RC9] gi|229352090|gb|EEO17031.1| ribonuclease HII [Vibrio cholerae B33] gi|229355185|gb|EEO20106.1| ribonuclease HII [Vibrio cholerae BX 330286] gi|229369839|gb|ACQ60262.1| ribonuclease HII [Vibrio cholerae MJ-1236] gi|254845081|gb|EET23495.1| ribonuclease HII [Vibrio cholerae MO10] gi|255735459|gb|EET90859.1| ribonuclease HII [Vibrio cholera CIRS 101] gi|262028709|gb|EEY47363.1| ribonuclease HII [Vibrio cholerae INDRE 91/1] gi|297541072|gb|EFH77126.1| ribonuclease HII [Vibrio cholerae MAK 757] Length = 206 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 92/202 (45%), Positives = 123/202 (60%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSE 60 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A+ ++ S Q ID+ NI +AT+ A+ AV L++ P LIDG Sbjct: 61 KKRLALFPEIQVKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IP+ LP +A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 121 IPK-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|258627364|ref|ZP_05722148.1| ribonuclease HII [Vibrio mimicus VM603] gi|258580402|gb|EEW05367.1| ribonuclease HII [Vibrio mimicus VM603] Length = 206 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 119/202 (58%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRAIVGLNDSKKLSE 60 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A+ S+ S + ID+ NI +AT+ A+ AV L V P L+DG Sbjct: 61 KKRLALFPEIQEKALAWSVGRCSPREIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P LP A AV+KGD I+AASIIAKV RD M K+YP +GF H GYPTA H Sbjct: 121 VPT-LPMDAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAAH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|312871434|ref|ZP_07731529.1| ribonuclease HII [Lactobacillus iners LEAF 3008A-a] gi|312872310|ref|ZP_07732380.1| ribonuclease HII [Lactobacillus iners LEAF 2062A-h1] gi|311092133|gb|EFQ50507.1| ribonuclease HII [Lactobacillus iners LEAF 2062A-h1] gi|311093087|gb|EFQ51436.1| ribonuclease HII [Lactobacillus iners LEAF 3008A-a] Length = 250 Score = 263 bits (674), Expect = 8e-69, Method: Composition-based stats. Identities = 97/206 (47%), Positives = 129/206 (62%), Gaps = 8/206 (3%) Query: 7 PERPHFELEAMV-REKNMW----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61 E+ E E EK W VAG+DEVGRG LAGPVV AA+ILD N +NDSK Sbjct: 45 KEKAFLEFETRFSYEKEFWCQKKLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSK 104 Query: 62 KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K++ KKR EL+ I A+ +S+ A++ IDK NI++A A+ AV+ L+V P + L+ Sbjct: 105 KLTPKKRNELFPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLV 164 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 D +P DLP +I+GDS S SIAAASI+AKV RDRLM + YP+Y F + GY Sbjct: 165 DAMDVPVDLP--QLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYG 222 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206 TAKH +K+ GP+ IHR +F P+ + Sbjct: 223 TAKHLSALKQYGPTPIHRFSFEPVSS 248 >gi|121604674|ref|YP_982003.1| ribonuclease HII [Polaromonas naphthalenivorans CJ2] gi|189043638|sp|A1VN54|RNH2_POLNA RecName: Full=Ribonuclease HII; Short=RNase HII gi|120593643|gb|ABM37082.1| RNase HII [Polaromonas naphthalenivorans CJ2] Length = 208 Score = 263 bits (674), Expect = 8e-69, Method: Composition-based stats. Identities = 84/182 (46%), Positives = 120/182 (65%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82 +AG+DE GRG LAGPVV AA+ILDP N G+ DSKK++ +RE+LY++I + A+ S Sbjct: 23 GLMAGVDEAGRGPLAGPVVAAAVILDPFNPIMGLADSKKLTALRREKLYDEIQAKALCCS 82 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A+ + ID NI +AT+ A+ AVE L++ P L+DG +P L A A++KGD++ Sbjct: 83 IALATVEEIDSLNILQATMLAMKRAVEGLRLKPNKVLVDGNRLPT-LKILAEAIVKGDAL 141 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKV RDR H +YP YGF H GY TA+H +++ G HR +F Sbjct: 142 VPAISAASILAKVYRDRWCGDYHLQYPQYGFAGHKGYGTAEHLAALRQHGACPQHRKSFA 201 Query: 203 PL 204 P+ Sbjct: 202 PV 203 >gi|16272990|ref|NP_439217.1| ribonuclease HII [Haemophilus influenzae Rd KW20] gi|260580145|ref|ZP_05847975.1| ribonuclease HII [Haemophilus influenzae RdAW] gi|1173096|sp|P43808|RNH2_HAEIN RecName: Full=Ribonuclease HII; Short=RNase HII gi|1574610|gb|AAC22714.1| ribonuclease HII (rnhB) [Haemophilus influenzae Rd KW20] gi|260093429|gb|EEW77362.1| ribonuclease HII [Haemophilus influenzae RdAW] Length = 197 Score = 263 bits (674), Expect = 8e-69, Method: Composition-based stats. Identities = 87/187 (46%), Positives = 118/187 (63%), Gaps = 1/187 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA- 79 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I A Sbjct: 6 QGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKAR 65 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ A ID+ NI +A+L A+ AV++L++ P LIDG IP+DL A AV+KG Sbjct: 66 AWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLIDGNKIPKDLAIPAQAVVKG 125 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS+ I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR Sbjct: 126 DSLVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRR 185 Query: 200 TFRPLRN 206 +F P++ Sbjct: 186 SFAPVKK 192 >gi|325121486|gb|ADY81009.1| RNAse HII [Acinetobacter calcoaceticus PHEA-2] Length = 188 Score = 263 bits (674), Expect = 8e-69, Method: Composition-based stats. Identities = 82/184 (44%), Positives = 117/184 (63%), Gaps = 1/184 (0%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A+ S Sbjct: 1 MFIAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWS 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A+H ID+ NI +AT A+ AV+ L+ P+ ++DG IP+ + A++ GD+ Sbjct: 61 IAEATHAEIDELNILQATFLAMQRAVDGLKTQPQKVIVDGNQIPKGIIIPCEAIVGGDAS 120 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M ++YP +GF H GYPT H + I G HR ++ Sbjct: 121 HAEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAVHGVIDQHRRSYA 180 Query: 203 PLRN 206 P++ Sbjct: 181 PVKR 184 >gi|296330821|ref|ZP_06873296.1| ribonuclease HII [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674339|ref|YP_003866011.1| ribonuclease HII [Bacillus subtilis subsp. spizizenii str. W23] gi|296151826|gb|EFG92700.1| ribonuclease HII [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412583|gb|ADM37702.1| ribonuclease HII [Bacillus subtilis subsp. spizizenii str. W23] Length = 255 Score = 263 bits (674), Expect = 8e-69, Method: Composition-based stats. Identities = 81/196 (41%), Positives = 119/196 (60%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + R K +AG+DEVGRG LAGPVV +A+IL G+ DSKK+S KKR+E Y Sbjct: 61 SYERLARNKGFRLIAGVDEVGRGPLAGPVVASAVILPEECEILGLTDSKKLSEKKRDEYY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I A+ + I ID+ NI++A+ A+ A+ +L P L+D ++P + Sbjct: 121 ELIMKEALAVGIGIVEASVIDEVNIYEASKMAMVKAIHDLSDTPDYLLVDAMTLPVGID- 179 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAA + IAKVTRDR+M + YP YGF+ + GY T +H + + Sbjct: 180 -QSSIIKGDAKSVSIAAGACIAKVTRDRMMSAYAETYPIYGFEKNKGYGTKEHLEALAAH 238 Query: 192 GPSCIHRLTFRPLRNL 207 GP+ +HR TF P+++ Sbjct: 239 GPTELHRKTFAPVQSF 254 >gi|312869151|ref|ZP_07729325.1| ribonuclease HII [Lactobacillus oris PB013-T2-3] gi|311095397|gb|EFQ53667.1| ribonuclease HII [Lactobacillus oris PB013-T2-3] Length = 255 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 83/197 (42%), Positives = 118/197 (59%), Gaps = 3/197 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F E + + VAG+DEVGRG LAGPVV A+ILDP+ G+ DSK+++ +R Sbjct: 57 QQRFNYERQLWQSGCRYVAGMDEVGRGPLAGPVVTCAVILDPDFDLIGVTDSKQLTRHER 116 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E+LY +I A+ +SI+ + ID+ NI+ AT DA+ AV NL P ++D +P Sbjct: 117 EQLYLRIVDEAVEVSIAVNDRKTIDRLNIYAATQDAMMRAVRNLNHRPDHLIVDAVPLPF 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D P +IKGD S+S+AAASI+AK RD LM+ + YP YGF ++GY T +H Sbjct: 177 DYP--QTTLIKGDQKSISVAAASIVAKEYRDHLMKDYDRVYPGYGFAENMGYGTKEHLAG 234 Query: 188 IKEKGPSCIHRLTFRPL 204 + G IHR +F P+ Sbjct: 235 LARLGACPIHRRSFNPV 251 >gi|289578443|ref|YP_003477070.1| ribonuclease H [Thermoanaerobacter italicus Ab9] gi|289528156|gb|ADD02508.1| Ribonuclease H [Thermoanaerobacter italicus Ab9] Length = 242 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 86/189 (45%), Positives = 115/189 (60%), Gaps = 2/189 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + N+ +AG+DE GRG L GPVV A +IL N INDSKK+S +KRE L E Sbjct: 48 YENQLYQLNLNFIAGVDEAGRGPLVGPVVAACVILPKNVFIPEINDSKKLSEEKREVLSE 107 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI +I + IDK NI AT A+ A+ +Q L+D +IP+ + Sbjct: 108 VIKKVAISYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQ-IEIN 166 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A+IKGDS S+SIAAASI+AKV RD++M+ HK YP Y F+ + GY T +H + +K+ G Sbjct: 167 QKAIIKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYG 226 Query: 193 PSCIHRLTF 201 P IHR TF Sbjct: 227 PCPIHRKTF 235 >gi|322391939|ref|ZP_08065403.1| ribonuclease HII [Streptococcus peroris ATCC 700780] gi|321145165|gb|EFX40562.1| ribonuclease HII [Streptococcus peroris ATCC 700780] Length = 262 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 123/197 (62%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + + +AG+DEVGRG LAGPVV AA+IL G+NDSK+I KK E+ Sbjct: 58 LSYEKELYAQGLNLIAGVDEVGRGPLAGPVVAAAVILPKKCKIKGLNDSKQIPKKKHREV 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + +A+ I I + ID+ NI++AT A+ A+ L+ P LID + DLP Sbjct: 118 FQAVKDNALAIGIGIMDNHIIDQVNIYEATKLAMKEAISQLESQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM +++P Y F+ + GY TAKH + IK+ Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDDLMVTYGQQFPGYDFEHNAGYGTAKHLEGIKQ 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P+++ Sbjct: 236 YGITSIHRRSFEPIKSF 252 >gi|262282236|ref|ZP_06060004.1| ribonuclease HII [Streptococcus sp. 2_1_36FAA] gi|262261527|gb|EEY80225.1| ribonuclease HII [Streptococcus sp. 2_1_36FAA] Length = 254 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 87/197 (44%), Positives = 121/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK E+ Sbjct: 58 LRYEKELYQAGYQAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHNEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + + A+ + I + ID+ NI++AT A+ A+ L + P LID + D+P Sbjct: 118 YQAVMNKALTVGIGLMDNDIIDQVNIYEATKLAMKEALSKLFLKPDYLLIDAMKLDVDIP 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRDRLM K++P Y F + GY T H + ++ Sbjct: 178 --QDSIIKGDANSLSIAAASIVAKVTRDRLMADYDKEFPGYAFAQNAGYGTKSHLEGLEH 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G S IHR TF P++++ Sbjct: 236 YGVSPIHRKTFEPVKSM 252 >gi|262372179|ref|ZP_06065458.1| ribonuclease HII [Acinetobacter junii SH205] gi|262312204|gb|EEY93289.1| ribonuclease HII [Acinetobacter junii SH205] Length = 188 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 86/184 (46%), Positives = 117/184 (63%), Gaps = 1/184 (0%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A+ S Sbjct: 1 MFVAGVDEAGRGPLVGSVVAAAVILDPNNPIEGLNDSKKLTEKKREKLFIEIKEKALAWS 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A+H ID+ NI +AT A+ AVENL+ P ++DG IP+ + A++ GD+ Sbjct: 61 IAEATHTEIDEMNILQATFLAMRRAVENLKTTPHKVIVDGNQIPKGIEIACEAIVGGDAT 120 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M+ + YPDYGF H GYPT H + I G HR ++ Sbjct: 121 HAEISAASILAKVTRDHQMKTLDELYPDYGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYA 180 Query: 203 PLRN 206 P++ Sbjct: 181 PVKK 184 >gi|300715410|ref|YP_003740213.1| ribonuclease HII [Erwinia billingiae Eb661] gi|299061246|emb|CAX58355.1| Ribonuclease HII [Erwinia billingiae Eb661] Length = 207 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 87/183 (47%), Positives = 113/183 (61%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A+ S+ Sbjct: 11 CIAGVDEVGRGPLVGAVVTAAVILDPARPIVGLADSKKLSEKRRLALYDEIVEKALSWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L + P LIDG P L + AV+KGDS+ Sbjct: 71 GRAEPEEIDRLNILHATMLAMQRAVAGLHICPDFVLIDGNRCPA-LAMPSLAVVKGDSLV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASIIAKVTRDR M +P YGF H GYPTA H + + + G + HR +F P Sbjct: 130 REISAASIIAKVTRDREMSELDVLFPQYGFAQHKGYPTALHMEKLAQHGVTPHHRRSFAP 189 Query: 204 LRN 206 +RN Sbjct: 190 VRN 192 >gi|94500636|ref|ZP_01307166.1| ribonuclease HII [Oceanobacter sp. RED65] gi|94427191|gb|EAT12171.1| ribonuclease HII [Oceanobacter sp. RED65] Length = 222 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 89/207 (42%), Positives = 128/207 (61%), Gaps = 8/207 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 ++ F+LE +++ + G+DE G G L G VV AA+ILDPNN +NDSKK+S KK Sbjct: 9 QQAWFQLEQSLKQSGILY-CGVDEAGAGPLCGDVVAAAVILDPNNPIDSLNDSKKLSEKK 67 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALI 120 RE L+ +I A+ I+ + Q ID+ NI +A + A+ AV+ L+ +P A I Sbjct: 68 REALFPEIKEKALAYCIARCTPQEIDEINILQARMLAMTRAVKGLRDQNGEICLPEHAFI 127 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG +P+ LPCQA V+KGD++ +I+AAS++AKV RD M K YP Y H GYP Sbjct: 128 DGNRLPQGLPCQATPVVKGDALVAAISAASVLAKVQRDHDMVELDKHYPGYELAKHKGYP 187 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNL 207 T H Q++KE GP+ I+R +F P++ L Sbjct: 188 TKAHLQLLKENGPTDIYRKSFGPVKAL 214 >gi|259500645|ref|ZP_05743547.1| ribonuclease HII [Lactobacillus iners DSM 13335] gi|302191334|ref|ZP_07267588.1| ribonuclease HII [Lactobacillus iners AB-1] gi|259168029|gb|EEW52524.1| ribonuclease HII [Lactobacillus iners DSM 13335] Length = 250 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 97/206 (47%), Positives = 129/206 (62%), Gaps = 8/206 (3%) Query: 7 PERPHFELEAMV-REKNMW----PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61 E+ E E EK W VAG+DEVGRG LAGPVV AA+ILD N +NDSK Sbjct: 45 KEKAFLEFETRFSYEKEFWCQKKLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSK 104 Query: 62 KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K++ KKR EL+ I A+ +S+ A++ IDK NI++A A+ AV+ L+V P + L+ Sbjct: 105 KLTPKKRNELFPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLV 164 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 D +P DLP +I+GDS S SIAAASI+AKV RDRLM + YP+Y F + GY Sbjct: 165 DAMDVPIDLP--QLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYG 222 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206 TAKH +K+ GP+ IHR +F P+ + Sbjct: 223 TAKHLSALKQYGPTPIHRFSFEPVSS 248 >gi|238916977|ref|YP_002930494.1| ribonuclease HII [Eubacterium eligens ATCC 27750] gi|238872337|gb|ACR72047.1| ribonuclease HII [Eubacterium eligens ATCC 27750] Length = 218 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 92/196 (46%), Positives = 117/196 (59%), Gaps = 6/196 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E M + GIDE GRG LAGPVV A+IL +NDSKK+S KKR+EL+ Sbjct: 27 EYEEMY--DTFSYICGIDEAGRGPLAGPVVAGAVILPKGKRILYVNDSKKLSEKKRDELF 84 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I A+ I S + ID+ NI +AT +A++ AV L V P L D +IP + Sbjct: 85 DVIKEEALSYGIGIVSPERIDEINILQATYEAMHEAVNKLSVKPDILLNDAVTIP-GIDI 143 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGD+ SLSIA+ASI+AKVTRDRLM YP+YGF H GY T H + IKE Sbjct: 144 KQIPIIKGDAKSLSIASASILAKVTRDRLMTEYDSLYPEYGFARHKGYGTKVHIEAIKEY 203 Query: 192 GPSCIHRLTFRPLRNL 207 GP IHR TF ++N Sbjct: 204 GPCPIHRRTF--IKNF 217 >gi|254508672|ref|ZP_05120787.1| ribonuclease HII [Vibrio parahaemolyticus 16] gi|219548429|gb|EED25439.1| ribonuclease HII [Vibrio parahaemolyticus 16] Length = 205 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 92/200 (46%), Positives = 119/200 (59%), Gaps = 7/200 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE + VAG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KK Sbjct: 7 ELPPFEYP-----QGYQHVAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKK 61 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L +I A+ S+ + ID+ NI +AT+ A+ A+ L+V P ALIDG P Sbjct: 62 RLALLPEIQEKALAWSVGRCTPAEIDELNILQATMVAMQRAIAGLKVQPDLALIDGNRCP 121 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP A AV+KGD I+AASIIAKV RD+ M K +P++GF H GYPT H + Sbjct: 122 A-LPMDAQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKLHPEFGFAKHKGYPTKAHFE 180 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I+ G HR +F+P++ Sbjct: 181 AIEAHGVIDQHRKSFKPVKK 200 >gi|212212281|ref|YP_002303217.1| ribonuclease HII [Coxiella burnetii CbuG_Q212] gi|238056775|sp|B6IZE4|RNH2_COXB2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|212010691|gb|ACJ18072.1| ribonuclease HII [Coxiella burnetii CbuG_Q212] Length = 202 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 90/186 (48%), Positives = 120/186 (64%), Gaps = 2/186 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DE GRG LAGPV+ AA+IL+P I G+ DSKK+S KKREELYEKI ++ +I Sbjct: 13 LIAGVDEAGRGPLAGPVITAAVILNPEIIIEGLADSKKLSLKKREELYEKIITNCKAFAI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI +ATL A+ A+ L + P LIDG P DLP + A+++GD Sbjct: 73 ARADVEEIDRLNIFRATLLAMQRAINQLSIQPDKVLIDGHCCP-DLPYETQAIVQGDQNV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKVTRDR M +YPDYGF H GY T H I G + +HR +F P Sbjct: 132 PAISAASILAKVTRDREMLKYDAQYPDYGFAIHKGYGTKAHLAAIHRFGITPVHRKSFEP 191 Query: 204 LRNLSV 209 +R L + Sbjct: 192 VRQLKL 197 >gi|300812547|ref|ZP_07092964.1| ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496420|gb|EFK31525.1| ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 256 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 90/198 (45%), Positives = 121/198 (61%), Gaps = 4/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E K VAG+DEVGRG LAGPVV AA+IL + +NDSKK+S +KR Sbjct: 55 RFSYEKDFWAKG-QLVAGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLA 113 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY KI A+ + + ++ ID+ NI++A A+ AVE L P + L+D ++P DL Sbjct: 114 LYPKILQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSTRPDALLVDAMNVPVDL 173 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +IKGD+ S SIAAASI+AKV RD LM + YPDY FD + GY T H + ++ Sbjct: 174 P--QLELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALR 231 Query: 190 EKGPSCIHRLTFRPLRNL 207 + GP+ IHRLTF P+ + Sbjct: 232 KYGPTPIHRLTFSPVSEM 249 >gi|218509940|ref|ZP_03507818.1| ribonuclease HII [Rhizobium etli Brasil 5] Length = 221 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 100/183 (54%), Positives = 134/183 (73%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 PVAG DE GRG LAGPVV AA+ILDP IP G+NDSK++S ++REEL+ +I ++A +SI Sbjct: 26 GPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDSKQLSAQRREELFVQILATATVSI 85 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +S+S ID+ +I KA+LDA+ A+ +L V L DG +P L C AV+KGD+ S Sbjct: 86 ASSSSTRIDETDIRKASLDAMRRAICSLAVPASYVLTDGLDVPPGLACPGQAVVKGDARS 145 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +SIAAASI+AKVTRDR+M AH +PDYGF +H GY TA+H+ I++ GP +HR++FRP Sbjct: 146 VSIAAASIVAKVTRDRMMARAHNVFPDYGFAAHAGYGTAQHRAGIEKHGPCSLHRMSFRP 205 Query: 204 LRN 206 LR Sbjct: 206 LRK 208 >gi|313123917|ref|YP_004034176.1| ribonuclease hii [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280480|gb|ADQ61199.1| Ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 256 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 90/198 (45%), Positives = 121/198 (61%), Gaps = 4/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E K VAG+DEVGRG LAGPVV AA+IL + +NDSKK+S +KR Sbjct: 55 RFSYEKDFWAKG-QLVAGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLT 113 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY KI A+ + + ++ ID+ NI++A A+ AVE L P + L+D ++P DL Sbjct: 114 LYPKILQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSTRPDALLVDAMNVPVDL 173 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +IKGD+ S SIAAASI+AKV RD LM + YPDY FD + GY T H + ++ Sbjct: 174 P--QLELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALR 231 Query: 190 EKGPSCIHRLTFRPLRNL 207 + GP+ IHRLTF P+ + Sbjct: 232 KYGPTPIHRLTFSPVSEM 249 >gi|295426276|ref|ZP_06818936.1| ribonuclease HII [Lactobacillus amylolyticus DSM 11664] gi|295064015|gb|EFG54963.1| ribonuclease HII [Lactobacillus amylolyticus DSM 11664] Length = 251 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 94/198 (47%), Positives = 124/198 (62%), Gaps = 4/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E +K VAG+DEVGRG LAGPVV AA+I+D + +NDSKK+S +KR Sbjct: 55 RFTYEKKFWQKG-QIVAGVDEVGRGPLAGPVVTAAVIIDDHFDLLDVNDSKKLSPQKRLA 113 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY KI S AI +++ S Q ID+ NI++A A+ AV +L P + L+D ++P DL Sbjct: 114 LYPKILSEAISVAVGVKSPQVIDQINIYEADRQAMAEAVLDLDQKPDALLVDAMNVPVDL 173 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +IKGD+ S SIAAASI+AKV RD+LM K YP Y F + GY TAKH +K Sbjct: 174 P--QVKLIKGDAKSNSIAAASIVAKVFRDKLMDDYAKIYPQYDFPDNAGYGTAKHLAALK 231 Query: 190 EKGPSCIHRLTFRPLRNL 207 + GP+ IHR TF P+ + Sbjct: 232 KYGPTPIHRKTFAPVSDF 249 >gi|227510328|ref|ZP_03940377.1| ribonuclease HII [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189980|gb|EEI70047.1| ribonuclease HII [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 255 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 81/200 (40%), Positives = 118/200 (59%), Gaps = 3/200 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F+ E + + VAG+DEVGRG LAGPVV A IL + +NDSK+++ + R Sbjct: 57 QSRFKYERSFWHRGVNYVAGVDEVGRGPLAGPVVACATILPRDFDLIQVNDSKQLTPEIR 116 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 L +I AI I + ++ ID+ NI++AT A+ AV NL P ++D I Sbjct: 117 ARLAPQIKREAISIGLGLVDNKGIDRLNIYEATRVAMKQAVNNLTQQPDEIIVDAMQI-- 174 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +P +IKGD+ S+S++AASI+AKV RD LM ++YP+Y F + GY TAKH Sbjct: 175 AVPIHQTRLIKGDAKSISVSAASIVAKVYRDTLMDQYAQQYPEYDFKHNAGYGTAKHLSA 234 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 +K+ G + IHR TF P++N Sbjct: 235 LKKYGATPIHRKTFAPVKNF 254 >gi|254286446|ref|ZP_04961403.1| ribonuclease HII [Vibrio cholerae AM-19226] gi|150423395|gb|EDN15339.1| ribonuclease HII [Vibrio cholerae AM-19226] Length = 206 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 92/202 (45%), Positives = 122/202 (60%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDP+ G+NDSKK+S Sbjct: 1 MAKKPSIELHPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPHRPIVGLNDSKKLSE 60 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A+ S+ S Q ID+ NI +AT+ A+ AV L++ P LIDG Sbjct: 61 KKRLALFPEIQEKALAWSVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IP+ LP A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 121 IPK-LPMAAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|297544719|ref|YP_003677021.1| Ribonuclease H [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842494|gb|ADH61010.1| Ribonuclease H [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 242 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 87/189 (46%), Positives = 115/189 (60%), Gaps = 2/189 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + N+ +AGIDE GRG L GPVV A +IL N INDSKK+S +KRE L E Sbjct: 48 YENQLYQLNLNFIAGIDEAGRGPLVGPVVAACVILPKNVFIPEINDSKKLSEEKREVLSE 107 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI +I + IDK NI AT A+ A+ +Q L+D +IP+ + Sbjct: 108 VIKKVAISYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQ-IEIN 166 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A+IKGDS S+SIAAASI+AKV RD++M+ HK YP Y F+ + GY T +H + +K+ G Sbjct: 167 QKAIIKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYG 226 Query: 193 PSCIHRLTF 201 P IHR TF Sbjct: 227 PCPIHRKTF 235 >gi|307941608|ref|ZP_07656963.1| ribonuclease HII [Roseibium sp. TrichSKD4] gi|307775216|gb|EFO34422.1| ribonuclease HII [Roseibium sp. TrichSKD4] Length = 216 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 93/206 (45%), Positives = 125/206 (60%), Gaps = 1/206 (0%) Query: 1 MFCNSIPERP-HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIND 59 +F PE+ LE +AG+DE GRG AGPVV AA+ILD + +P G+ D Sbjct: 7 LFDLVFPEKEADPALERQHASHFGGLLAGVDEAGRGPWAGPVVTAAVILDYDKVPSGLTD 66 Query: 60 SKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 SKK+S KREEL+ +I A +S++SA + ID NI ATL+A+ AV L PR + Sbjct: 67 SKKLSEAKREELFPQICEHAFVSVASAGPKTIDLENIRTATLNAMVRAVSGLAFPPRYVM 126 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 IDGR +P L A++KGDS L++AAASI+AKV RDR+M + P+YGF H GY Sbjct: 127 IDGRDVPFGLSAPGQALVKGDSRCLAVAAASIVAKVMRDRMMVRLDQIAPEYGFAQHKGY 186 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLR 205 HQ + E GPS HR +F+P++ Sbjct: 187 GVPAHQAALSEHGPSIHHRFSFKPVQ 212 >gi|290473671|ref|YP_003466543.1| RNAse HII [Xenorhabdus bovienii SS-2004] gi|289172976|emb|CBJ79747.1| RNAse HII [Xenorhabdus bovienii SS-2004] Length = 196 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 90/183 (49%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP G+ DSKK++ K+RE LY +I A+ S+ Sbjct: 10 LIAGVDEVGRGPLVGAVVTAAVILDPAKPITGLMDSKKLTEKRREALYLEIKEKALCWSL 69 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AVE L + P LIDG P LP A AVIKGDS+ Sbjct: 70 GRAEPEEIDQLNILHATMLAMQRAVEGLAITPDYVLIDGNRCPA-LPMSALAVIKGDSLV 128 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M K++PDYGF H GYPTA H + + G + HR +F P Sbjct: 129 AEISAASILAKVTRDREMAELGKQFPDYGFAQHKGYPTALHLEKLALLGATEHHRKSFAP 188 Query: 204 LRN 206 ++ Sbjct: 189 VKR 191 >gi|170718385|ref|YP_001783609.1| ribonuclease HII [Haemophilus somnus 2336] gi|189043602|sp|B0UW63|RNH2_HAES2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|168826514|gb|ACA31885.1| Ribonuclease H [Haemophilus somnus 2336] Length = 211 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 90/187 (48%), Positives = 120/187 (64%), Gaps = 2/187 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 N+ +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I A+ Sbjct: 9 NVEFIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLKDSKKLSEKKRLLLAEEIKQKALA 68 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 S+ A IDK NI AT+ A+ AVENL++ P L+DG IP+ LP A AVIKGD Sbjct: 69 WSLGRAEPAEIDKLNILHATMLAMQRAVENLKIQPHFVLVDGNRIPQ-LPMSAQAVIKGD 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+ I+AASI+AKV RD+ M ++YP+Y F H GYPT H + + + G +R + Sbjct: 128 SLVAEISAASILAKVARDQEMIELDRRYPEYAFAQHKGYPTKLHLERLAQFGVLPEYRRS 187 Query: 201 FRPLRNL 207 F P++ L Sbjct: 188 FAPVKKL 194 >gi|183597582|ref|ZP_02959075.1| hypothetical protein PROSTU_00865 [Providencia stuartii ATCC 25827] gi|188023079|gb|EDU61119.1| hypothetical protein PROSTU_00865 [Providencia stuartii ATCC 25827] Length = 197 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 87/183 (47%), Positives = 114/183 (62%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK++ KKRE+L+ +I A+ I Sbjct: 10 LIAGVDEVGRGPLVGAVVTAAVILDPKNPIIGLTDSKKLTEKKREKLFVEIQEKALCWCI 69 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L + P L+DG P L + AVIKGDS+ Sbjct: 70 GRAEPEEIDEINILHATMLAMQRAVAGLSITPDFVLVDGNRCPT-LSMPSQAVIKGDSLV 128 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RDR M K YP+YGF H GYPTA H + + + G + HR +F P Sbjct: 129 QEISAASILAKVVRDREMVELDKAYPEYGFAKHKGYPTAYHLEKLAQFGATKFHRKSFAP 188 Query: 204 LRN 206 +R Sbjct: 189 VRR 191 >gi|307264856|ref|ZP_07546418.1| Ribonuclease H [Thermoanaerobacter wiegelii Rt8.B1] gi|306920114|gb|EFN50326.1| Ribonuclease H [Thermoanaerobacter wiegelii Rt8.B1] Length = 242 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 84/189 (44%), Positives = 113/189 (59%), Gaps = 2/189 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + N+ +AG+DE GRG L GPVV A +IL INDSKK+S KKRE L E Sbjct: 48 YENQLYQLNLNFIAGVDEAGRGPLVGPVVAACVILPKEVFIPEINDSKKLSEKKREVLSE 107 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I A +I + IDK NI AT A+ A+ +Q L+D +IP+ + Sbjct: 108 VIKKVATSYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQ-IEIN 166 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A++KGDS S+SIAAASI+AKV RD++M+ HK YP Y F+ + GY T +H + +K+ G Sbjct: 167 QKAIVKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYG 226 Query: 193 PSCIHRLTF 201 P IHR TF Sbjct: 227 PCPIHRKTF 235 >gi|260893261|ref|YP_003239358.1| Ribonuclease H [Ammonifex degensii KC4] gi|260865402|gb|ACX52508.1| Ribonuclease H [Ammonifex degensii KC4] Length = 204 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 88/196 (44%), Positives = 115/196 (58%), Gaps = 2/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E+ VAG+DE GRG LAGPVV AA+I P+ + DSK +S KKR EL Sbjct: 3 RWEEKFWEQGFRRVAGVDEAGRGPLAGPVVAAAVIFPPSLDLPLLKDSKLLSPKKRWELA 62 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A +I S ID I +AT A+Y A+ +L++ P LIDG S P LP Sbjct: 63 CRIVELAEDWAIGIGSVAEIDLLGIREATFRAMYRALCSLRLPPDMVLIDGNSSPP-LPW 121 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++KGDS S+AAASI+AKVTRDRLM H +P Y F H GYPT +H++++ Sbjct: 122 PHLTIVKGDSRVASVAAASILAKVTRDRLMEDLHPLFPQYNFKRHKGYPTKEHKELLARY 181 Query: 192 GPSCIHRLTFRPLRNL 207 GP +HR TF P+R+ Sbjct: 182 GPVSLHRRTFAPVRHF 197 >gi|54310070|ref|YP_131090.1| ribonuclease HII [Photobacterium profundum SS9] gi|73917828|sp|Q6LN38|RNH2_PHOPR RecName: Full=Ribonuclease HII; Short=RNase HII gi|46914509|emb|CAG21288.1| putative ribonuclease HII [Photobacterium profundum SS9] Length = 201 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 88/184 (47%), Positives = 118/184 (64%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L+++I A+ S+ Sbjct: 15 LIAGVDEVGRGPLVGAVVTAAVILDPNNPIVGLTDSKKLSEKKRNVLFDEIKEKAVAWSL 74 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + ID+ NI +AT+ A+ AV +L V P LIDG IP+ LP A AV+KGD Sbjct: 75 GRCEPEEIDELNILQATMVAMQRAVADLSVQPDFVLIDGNKIPQ-LPMAAQAVVKGDLRV 133 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASIIAKVTRDR M + ++P YGF H GYPT H + ++ G HR +F+P Sbjct: 134 AEISAASIIAKVTRDREMEVLDAQFPQYGFAKHKGYPTKVHVEALELHGAIEQHRKSFKP 193 Query: 204 LRNL 207 ++ + Sbjct: 194 VKRI 197 >gi|157962690|ref|YP_001502724.1| ribonuclease HII [Shewanella pealeana ATCC 700345] gi|189043660|sp|A8H6K2|RNH2_SHEPA RecName: Full=Ribonuclease HII; Short=RNase HII gi|157847690|gb|ABV88189.1| Ribonuclease H [Shewanella pealeana ATCC 700345] Length = 203 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 91/181 (50%), Positives = 119/181 (65%), Gaps = 2/181 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKRE L+E+I A+ +S+ S Sbjct: 21 AGVDEVGRGPLIGNVVTAAVILDPNNPIEGLNDSKKLSEKKRELLFEQIQQKALSVSVGS 80 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A+ ID+ NI AT+ A+ AV L + P S L+DG P D ++ A+IKGD + + Sbjct: 81 ATPAEIDELNILHATMLAMQRAVAGLNIKPSSVLVDGNRTP-DFGVESHAIIKGDGLIDA 139 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASIIAKV RDR M YP+YGF+ H GYPT H + + + G HR +FRP+R Sbjct: 140 ISAASIIAKVVRDREMDALALLYPEYGFEKHKGYPTKAHFEALAQHGVLPEHRKSFRPVR 199 Query: 206 N 206 Sbjct: 200 E 200 >gi|293374717|ref|ZP_06621025.1| ribonuclease HII [Turicibacter sanguinis PC909] gi|325840606|ref|ZP_08167087.1| ribonuclease HII [Turicibacter sp. HGF1] gi|292646631|gb|EFF64633.1| ribonuclease HII [Turicibacter sanguinis PC909] gi|325490255|gb|EGC92588.1| ribonuclease HII [Turicibacter sp. HGF1] Length = 257 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 91/194 (46%), Positives = 123/194 (63%), Gaps = 2/194 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +R + +AG+DEVGRG LAGPV+ AA+IL + FGI+DSKK+S KR YE Sbjct: 62 YENELRYSGIELIAGVDEVGRGPLAGPVIAAAVILPADCWLFGIDDSKKLSESKRLYFYE 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I +AI I I + + ID++NI++AT A+ AV L P+ L+D S+P L Sbjct: 122 QIKKNAISIGIGICTSEEIDQYNIYEATKIAMERAVSKLNPKPQHLLLDAMSLPR-LDIP 180 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGDS S+SIAAASIIAKVTRD M+ YP YGF+ HVGY T +H I++ G Sbjct: 181 QTSIIKGDSKSVSIAAASIIAKVTRDAYMKKLGSAYPQYGFERHVGYGTKEHLLAIEQHG 240 Query: 193 PSCIHRLTFRPLRN 206 HR +F P+R+ Sbjct: 241 IISEHRKSFEPIRS 254 >gi|157151005|ref|YP_001450488.1| ribonuclease HII [Streptococcus gordonii str. Challis substr. CH1] gi|189043666|sp|A8AXH8|RNH2_STRGC RecName: Full=Ribonuclease HII; Short=RNase HII gi|157075799|gb|ABV10482.1| Ribonuclease HII (RNase HII) [Streptococcus gordonii str. Challis substr. CH1] Length = 254 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 87/196 (44%), Positives = 120/196 (61%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+Y Sbjct: 59 RYEKELYQSGYQAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEIY 118 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + A+ + I IDK NI++AT A+ A+ L + P LID + D+ Sbjct: 119 QAVMDKALAVGIGLMDSDIIDKVNIYEATKLAMKEALSKLPLKPDYLLIDAMKL--DVEI 176 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ SLSIAAASI+AKVTRDRLM K++P Y F + GY T +H + ++ Sbjct: 177 PQESIIKGDANSLSIAAASIVAKVTRDRLMADYDKEFPGYAFAQNAGYGTKRHLEGLEHY 236 Query: 192 GPSCIHRLTFRPLRNL 207 G S IHR TF P++++ Sbjct: 237 GVSPIHRKTFEPVKSM 252 >gi|329117652|ref|ZP_08246369.1| ribonuclease HII [Streptococcus parauberis NCFD 2020] gi|326908057|gb|EGE54971.1| ribonuclease HII [Streptococcus parauberis NCFD 2020] Length = 257 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 86/200 (43%), Positives = 119/200 (59%), Gaps = 6/200 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV A +IL N G+NDSKKI K E + Sbjct: 59 LRYEKSLYAQGYQAIAGIDEVGRGPLAGPVVAACVILPKNCKITGLNDSKKIPKSKHEMI 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPE 127 Y + AI + I +++ ID+ NI++AT A+ A+ NL + P LID + Sbjct: 119 YNLVIEKAIAVGIGLMTNEVIDEVNIYQATKLAMQAAINNLEGDNLTPDFLLIDAMKLEN 178 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +P ++IKGD+ SLSIAAASI+AKVTRDRLM K YP Y F + GY T H + Sbjct: 179 SIP--QESIIKGDANSLSIAAASIVAKVTRDRLMVDYDKAYPGYDFAKNAGYGTKNHLEG 236 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 +++ G + IHR TF P++++ Sbjct: 237 LRKLGVTEIHRRTFEPVKSM 256 >gi|264679353|ref|YP_003279260.1| ribonuclease HII/HIII [Comamonas testosteroni CNB-2] gi|299532312|ref|ZP_07045705.1| ribonuclease HII [Comamonas testosteroni S44] gi|262209866|gb|ACY33964.1| ribonuclease HII/HIII [Comamonas testosteroni CNB-2] gi|298719720|gb|EFI60684.1| ribonuclease HII [Comamonas testosteroni S44] Length = 237 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 88/182 (48%), Positives = 119/182 (65%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82 VAG+DE GRG LAGPVV AA+ILD G+NDSKK++ +RE LY++I + A+ Sbjct: 17 GLVAGVDEAGRGPLAGPVVAAAVILDDLKPIAGLNDSKKLTANRREVLYDEIRAKALCFC 76 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ AS Q ID+ NI KATL A+ AV L++ P L+DG +P+ + QA A++KGDS+ Sbjct: 77 IAQASVQEIDEINILKATLLAMRRAVMGLRLKPVLVLVDGNQLPQ-IDVQAEAIVKGDSL 135 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKVTRDR +YP YGF H GY TA H Q ++ G + HR +F Sbjct: 136 VQAISAASILAKVTRDRWCERLDAQYPQYGFAGHKGYGTAAHLQALRAHGATAEHRRSFA 195 Query: 203 PL 204 P+ Sbjct: 196 PV 197 >gi|167037678|ref|YP_001665256.1| ribonuclease HII [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116093|ref|YP_004186252.1| Ribonuclease H [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856512|gb|ABY94920.1| Ribonuclease H [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929184|gb|ADV79869.1| Ribonuclease H [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 242 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 84/189 (44%), Positives = 114/189 (60%), Gaps = 2/189 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + N+ +AG+DE GRG L GPVV A +IL INDSKK+S +KRE L E Sbjct: 48 YENQLYQLNLNFIAGVDEAGRGPLVGPVVAACVILPKEVFIPEINDSKKLSEEKREVLSE 107 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI +I + IDK NI AT A+ A+ +Q L+D +IP+ + Sbjct: 108 VIKKVAISYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQ-IEIN 166 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A++KGDS S+SIAAASI+AKV RD++M+ HK YP Y F+ + GY T +H + +K+ G Sbjct: 167 QKAIVKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYG 226 Query: 193 PSCIHRLTF 201 P IHR TF Sbjct: 227 PCPIHRKTF 235 >gi|319405354|emb|CBI78971.1| Ribonuclease HII [Bartonella sp. AR 15-3] Length = 212 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 104/208 (50%), Positives = 143/208 (68%), Gaps = 4/208 (1%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 MF ++P +P+F E +++K + VAG+DEVGRG LAGPVV AA++LD + IP G+NDS Sbjct: 1 MF--NVPFQPNFSYELDLQKKGFFYVAGVDEVGRGPLAGPVVTAAVVLDKSRIPEGLNDS 58 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK+S ++R LY +I +A+ IS++S + IDK +I KATL+A+ V L + AL Sbjct: 59 KKLSRQQRNRLYYEILQNALAISVASLCARTIDKSDIRKATLEAMRRCVTGLAISAHYAL 118 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 IDGR IP +LPC A A+IKGD S+SIAAASIIAKV RDR+M+ A + Y +Y + HVGY Sbjct: 119 IDGRDIPSNLPCPAIALIKGDQSSVSIAAASIIAKVIRDRMMQYAGRVYQNYDLEKHVGY 178 Query: 180 PTAKHQQVIKEKGPS-CIHRLTFRPLRN 206 T H+ I + GP +HR +F PL+ Sbjct: 179 GTVAHRAAIDKYGPIVRLHRYSFSPLKE 206 >gi|262276513|ref|ZP_06054322.1| ribonuclease HII [Grimontia hollisae CIP 101886] gi|262220321|gb|EEY71637.1| ribonuclease HII [Grimontia hollisae CIP 101886] Length = 200 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 86/184 (46%), Positives = 112/184 (60%), Gaps = 1/184 (0%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK++ KKR L+E+I A+ S Sbjct: 12 RLIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTDKKRAVLFEEIKEKALAWS 71 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI AT+ A+ AV L + P LIDG +P+ L A AV+KGD Sbjct: 72 LGRAEPEEIDELNILSATMLAMERAVAGLNIKPDFVLIDGNRVPQGLTVPAQAVVKGDLR 131 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKV RDR M KYP YGF H GYPT H + + G HR +F+ Sbjct: 132 VAEISAASILAKVVRDREMEALDAKYPQYGFAKHKGYPTKVHFEALATHGAILEHRKSFK 191 Query: 203 PLRN 206 P++ Sbjct: 192 PVKK 195 >gi|256750728|ref|ZP_05491613.1| Ribonuclease H [Thermoanaerobacter ethanolicus CCSD1] gi|256750311|gb|EEU63330.1| Ribonuclease H [Thermoanaerobacter ethanolicus CCSD1] Length = 242 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 83/189 (43%), Positives = 113/189 (59%), Gaps = 2/189 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + N+ +AG+DE GRG L GPVV A +I + INDSKK+S +KRE L E Sbjct: 48 YENQLYQLNLNFIAGVDEAGRGPLVGPVVAACVIFPKDVFIPEINDSKKLSEEKREVLSE 107 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI S + IDK NI AT A+ A+ +Q L+D +IP+ + Sbjct: 108 VIKKVAISYSFGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQ-IEIN 166 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A++KGDS S+SIAAASI+AKV RD++M+ HK YP Y F+ + GY T +H + +K+ G Sbjct: 167 QKAIVKGDSKSISIAAASILAKVERDKMMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYG 226 Query: 193 PSCIHRLTF 201 P IHR TF Sbjct: 227 PCPIHRKTF 235 >gi|113461500|ref|YP_719569.1| ribonuclease HII [Haemophilus somnus 129PT] gi|122945377|sp|Q0I4M6|RNH2_HAES1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|112823543|gb|ABI25632.1| RNase HII [Haemophilus somnus 129PT] Length = 211 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 90/187 (48%), Positives = 120/187 (64%), Gaps = 2/187 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 N+ +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I A+ Sbjct: 9 NVEFIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLKDSKKLSEKKRLLLAEEIKQKALA 68 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 S+ A IDK NI AT+ A+ AVENL++ P L+DG IP+ LP A AVIKGD Sbjct: 69 WSLGRAEPAEIDKLNILHATMLAMQRAVENLKIQPHFVLVDGNRIPQ-LPMSAQAVIKGD 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+ I+AASI+AKV RD+ M ++YP+Y F H GYPT H + + + G +R + Sbjct: 128 SLVAEISAASILAKVARDQEMIELDRRYPEYAFAQHKGYPTKLHLERLAQFGVLPEYRRS 187 Query: 201 FRPLRNL 207 F P++ L Sbjct: 188 FAPVKKL 194 >gi|328467373|gb|EGF38451.1| ribonuclease HII [Lactobacillus helveticus MTCC 5463] Length = 249 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 94/195 (48%), Positives = 124/195 (63%), Gaps = 4/195 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E +K+ VAG+DEVGRG LAGPVV AA+I+D N +NDSKK+S +KR + Sbjct: 54 RFSYEKQFWQKD-ELVAGVDEVGRGPLAGPVVTAAVIIDHNFDLLEVNDSKKLSPEKRLQ 112 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY KI S A+ + I S ID+ NI++A A+ AV+ L V P + L+D ++P DL Sbjct: 113 LYPKILSEAVSVGIGVKSAAVIDQINIYEADRQAMAQAVKALDVKPNALLVDAMNVPVDL 172 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +IKGD+ S SIAAASI+AKV RD+LM K YP YGF + GY T +H +K Sbjct: 173 P--QIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFPRNAGYGTKEHIDALK 230 Query: 190 EKGPSCIHRLTFRPL 204 + GP+ IHR TF P+ Sbjct: 231 KYGPTPIHRKTFAPV 245 >gi|15675138|ref|NP_269312.1| ribonuclease HII [Streptococcus pyogenes M1 GAS] gi|32171707|sp|Q99ZM6|RNH2_STRP1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|13622298|gb|AAK34033.1| putative ribonuclease HII [Streptococcus pyogenes M1 GAS] Length = 263 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 82/200 (41%), Positives = 120/200 (60%), Gaps = 6/200 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +K +AGIDEVGRG LAGPVV A +IL G+NDSKKI K E + Sbjct: 59 LSYEKALYKKGYKAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKAKHETI 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127 Y+ + A+ I I +Q ID+ NI++AT A+ A++ L+ P LID ++ Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTL-- 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D+ +++KGD+ SLSIAAASI+AKVTRD++M + +P Y F + GY T +H Q Sbjct: 177 DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYDFAKNAGYGTKEHLQG 236 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 +K G + IHR +F P++++ Sbjct: 237 LKAYGITPIHRKSFEPVKSM 256 >gi|322389594|ref|ZP_08063143.1| ribonuclease HII [Streptococcus parasanguinis ATCC 903] gi|321143720|gb|EFX39149.1| ribonuclease HII [Streptococcus parasanguinis ATCC 903] Length = 255 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 84/207 (40%), Positives = 122/207 (58%), Gaps = 3/207 (1%) Query: 2 FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61 + E + + + +AG+DEVGRG LAGPVV AA+IL N G+NDSK Sbjct: 48 VDEDLRLEKMLAYEKELYTQGIHLIAGVDEVGRGPLAGPVVAAAVILPENCKIPGLNDSK 107 Query: 62 KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 KI K +Y+ + A+ + I +Q ID+ NI++AT A+ A++ L P+ LI Sbjct: 108 KIPKSKHHAIYQAVLDQALSVGIGIKDNQVIDQVNIYEATKLAMLEAIQELDPRPQHLLI 167 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 D + DLP ++IKGD+ SLSIAAASI+AKVTRD++M +YP Y F +VGY Sbjct: 168 DAMRL--DLPIPQTSIIKGDANSLSIAAASIVAKVTRDQMMEEFDCEYPGYDFTQNVGYG 225 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNL 207 TA H + + G + IHR +F P++++ Sbjct: 226 TANHLAGLHKLGVTPIHRRSFEPIKSM 252 >gi|46446292|ref|YP_007657.1| ribonuclease HII [Candidatus Protochlamydia amoebophila UWE25] gi|81627372|sp|Q6MDG7|RNH2_PARUW RecName: Full=Ribonuclease HII; Short=RNase HII gi|46399933|emb|CAF23382.1| putative ribonuclease HII [Candidatus Protochlamydia amoebophila UWE25] Length = 222 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 90/197 (45%), Positives = 125/197 (63%), Gaps = 5/197 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + +AGIDE GRG LAGPVV AA IL + INDSKK+S K RE L+E Sbjct: 19 YEKRAFSQGYQLIAGIDEAGRGPLAGPVVAAACILPKGLLVPQINDSKKLSPKVRERLFE 78 Query: 74 KITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-EDLP 130 ++T+ + + I ID+ NI++AT+ A+ A++ L V P L+DG ++P DLP Sbjct: 79 RLTTDSAVRYGIGIIGQAEIDRVNIYQATILAMLMAIQQLPVTPDYVLVDGMNLPHPDLP 138 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 C +IKGD +S SIAAASIIAK TRDRLM H+++P YGF+ H GY T H + + + Sbjct: 139 C--LKIIKGDQLSQSIAAASIIAKETRDRLMCQYHREWPGYGFNQHKGYATELHLEALFK 196 Query: 191 KGPSCIHRLTFRPLRNL 207 +GP IHR +F P++++ Sbjct: 197 QGPCPIHRRSFDPIKSM 213 >gi|21910354|ref|NP_664622.1| ribonuclease HII [Streptococcus pyogenes MGAS315] gi|28895931|ref|NP_802281.1| ribonuclease HII [Streptococcus pyogenes SSI-1] gi|32171668|sp|Q8K7G7|RNH2_STRP3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|21904551|gb|AAM79425.1| putative ribonuclease HII [Streptococcus pyogenes MGAS315] gi|28811181|dbj|BAC64114.1| putative ribonuclease HII [Streptococcus pyogenes SSI-1] Length = 263 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 82/200 (41%), Positives = 122/200 (61%), Gaps = 6/200 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ +AGIDEVGRG LAGPVV A +IL + G+NDSKKI K E + Sbjct: 59 LSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKAKHETI 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127 Y+ + A+ I I +Q ID+ NI++AT A+ A++ L+ P LID ++ Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTL-- 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D+ +++KGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T +H Q Sbjct: 177 DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQE 236 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 +K G + IHR +F P++++ Sbjct: 237 LKAYGITPIHRKSFEPVKSM 256 >gi|312866631|ref|ZP_07726846.1| ribonuclease HII [Streptococcus parasanguinis F0405] gi|311097930|gb|EFQ56159.1| ribonuclease HII [Streptococcus parasanguinis F0405] Length = 255 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 87/197 (44%), Positives = 122/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + M +AG+DEVGRG LAGPVV AA+IL G+NDSKKI K +E+ Sbjct: 58 LTYEKECYARGMELIAGVDEVGRGPLAGPVVAAAVILPKACKIPGLNDSKKIPKSKHKEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YE + +AI I I + ID+ NI++AT A+ A+ L P+ LID + DLP Sbjct: 118 YEAVLQNAIAIGIGIKDNHVIDQVNIYEATKLAMMEAIGQLDPQPQHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD++M ++YP Y F + GY TAKH +++ Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDQMMEEFDREYPGYDFAQNAGYGTAKHLDGLEQ 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 236 LGVTPIHRRSFEPVKSM 252 >gi|260101617|ref|ZP_05751854.1| ribonuclease HII [Lactobacillus helveticus DSM 20075] gi|260084580|gb|EEW68700.1| ribonuclease HII [Lactobacillus helveticus DSM 20075] Length = 250 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 94/198 (47%), Positives = 125/198 (63%), Gaps = 4/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E +K+ VAG+DEVGRG LAGPVV AA+I+D N +NDSKK+S +KR + Sbjct: 54 RFSYEKQFWQKD-ELVAGVDEVGRGPLAGPVVTAAVIIDHNFDLLEVNDSKKLSPEKRLQ 112 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY KI S A+ + I S ID+ NI++A A+ AV+ L V P + L+D ++P DL Sbjct: 113 LYPKILSEAVSVGIGVKSAAVIDQINIYEADRQAMAQAVKALDVKPNALLVDAMNVPVDL 172 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +IKGD+ S SIAAASI+AKV RD+LM K YP YGF + GY T +H +K Sbjct: 173 P--QIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFPRNAGYGTKEHIDALK 230 Query: 190 EKGPSCIHRLTFRPLRNL 207 + GP+ IHR TF P+ + Sbjct: 231 KYGPTPIHRKTFAPVSDF 248 >gi|49475220|ref|YP_033261.1| ribonuclease HII [Bartonella henselae str. Houston-1] gi|81648141|sp|Q6G4E3|RNH2_BARHE RecName: Full=Ribonuclease HII; Short=RNase HII gi|49238025|emb|CAF27232.1| Ribonuclease HII [Bartonella henselae str. Houston-1] Length = 223 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 103/204 (50%), Positives = 141/204 (69%), Gaps = 2/204 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 ++P +P+F E ++++ +AG+DEVGRG LAGPVV AA+ILD N IP G+NDSKK+S Sbjct: 13 NLPFKPNFACELDLQKQGFLYIAGVDEVGRGPLAGPVVTAAVILDKNRIPDGLNDSKKLS 72 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 ++R ELY +I SA+ ISI+S + ID+ +I KATL+A+ + L V AL+DGR Sbjct: 73 AQRRYELYHEILQSALAISIASLCARTIDQSDIRKATLEAMRRCIRGLAVPAHYALVDGR 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 IP LPC A A+IKGD S+SIAAASIIAKVTRD++M A + Y YG + HVGY T Sbjct: 133 DIPFQLPCPATALIKGDQRSVSIAAASIIAKVTRDQMMECAGQVYKGYGLEKHVGYATLA 192 Query: 184 HQQVIKEKGPSC-IHRLTFRPLRN 206 H+ +++ GP +HR +F PL+ Sbjct: 193 HRAALEKYGPVVGLHRYSFAPLKK 216 >gi|325686018|gb|EGD28077.1| ribonuclease HII [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 256 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 90/198 (45%), Positives = 121/198 (61%), Gaps = 4/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E K VAG+DEVGRG LAGPVV AA+IL + +NDSKK+S +KR Sbjct: 55 RFSYEKDFWAKG-QLVAGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLV 113 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY KI A+ + + ++ ID+ NI++A A+ AVE L P + L+D ++P DL Sbjct: 114 LYPKILQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSTRPDALLVDAMNVPVDL 173 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +IKGD+ S SIAAASI+AKV RD LM + YPDY FD + GY T H + ++ Sbjct: 174 P--QLELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALR 231 Query: 190 EKGPSCIHRLTFRPLRNL 207 + GP+ IHRLTF P+ + Sbjct: 232 KYGPTPIHRLTFSPVSEM 249 >gi|15964592|ref|NP_384945.1| ribonuclease HII [Sinorhizobium meliloti 1021] gi|307309338|ref|ZP_07589001.1| Ribonuclease H [Sinorhizobium meliloti BL225C] gi|307320074|ref|ZP_07599495.1| Ribonuclease H [Sinorhizobium meliloti AK83] gi|39932445|sp|Q92RM4|RNH2_RHIME RecName: Full=Ribonuclease HII; Short=RNase HII gi|15073770|emb|CAC45411.1| Probable ribonuclease HII protein [Sinorhizobium meliloti 1021] gi|306894289|gb|EFN25054.1| Ribonuclease H [Sinorhizobium meliloti AK83] gi|306900207|gb|EFN30825.1| Ribonuclease H [Sinorhizobium meliloti BL225C] Length = 216 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 104/207 (50%), Positives = 139/207 (67%), Gaps = 1/207 (0%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 +F P P F E WPVAG DE GRG LAGPVV AA+ILDP+ IP G+NDS Sbjct: 11 LFPLQAPV-PDFTFERAAHRDGFWPVAGADEAGRGPLAGPVVAAAVILDPDAIPAGLNDS 69 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K ++ ++RE L+E+I +++ +SI+S+S ID +I KA+LDA+ AV L++ R L+ Sbjct: 70 KLLTAEQREALFEEILATSTVSIASSSSARIDTTDILKASLDAMRRAVHGLELAARIVLV 129 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DGR +P L C A A++KGDS S+SIAAASI+AKVTRDR+M A +P YGF H GY Sbjct: 130 DGRDVPPGLSCHAKAIVKGDSRSVSIAAASIVAKVTRDRMMARADATFPLYGFAHHAGYA 189 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNL 207 T KH+ I+ GP +HR++FRP R + Sbjct: 190 TVKHRTAIESHGPCSLHRMSFRPFRQV 216 >gi|221066099|ref|ZP_03542204.1| Ribonuclease H [Comamonas testosteroni KF-1] gi|220711122|gb|EED66490.1| Ribonuclease H [Comamonas testosteroni KF-1] Length = 243 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 88/182 (48%), Positives = 119/182 (65%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82 VAG+DE GRG LAGPVV AA+ILD G+NDSKK++ +RE LY++I + A+ Sbjct: 23 GLVAGVDEAGRGPLAGPVVAAAVILDDMKPIAGLNDSKKLTANRREVLYDEIRAKALCFC 82 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ AS Q ID+ NI KATL A+ AV L++ P L+DG +P+ + QA A++KGDS+ Sbjct: 83 IAQASVQEIDEINILKATLLAMRRAVMGLRLKPVLVLVDGNQLPQ-IDVQAEAIVKGDSL 141 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKVTRDR +YP YGF H GY TA H Q ++ G + HR +F Sbjct: 142 VQAISAASILAKVTRDRWCERLDAQYPQYGFAGHKGYGTAAHLQALRAHGATAEHRRSFA 201 Query: 203 PL 204 P+ Sbjct: 202 PV 203 >gi|319408204|emb|CBI81857.1| Ribonuclease HII [Bartonella schoenbuchensis R1] Length = 223 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 100/204 (49%), Positives = 137/204 (67%), Gaps = 2/204 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 ++P +P F E + ++ + +AG+DEVGRG LAGPVV AA+ILD N+IP G+NDSKK S Sbjct: 13 NVPLQPDFSHELDLHKQGFFYIAGVDEVGRGPLAGPVVTAAVILDKNHIPEGLNDSKKFS 72 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 ++R +LY KI +A+ IS++S + ID+ +I KATL+A+ V L + L+DGR Sbjct: 73 AQQRNQLYGKILQNALAISVASICARVIDQSDIRKATLEAMRRCVVGLSIPAHYVLVDGR 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 IP L C A A+IKGD S+SIAAASI+AKVTRDR+M A + Y YG + HVGY T Sbjct: 133 DIPPHLLCPATALIKGDQRSVSIAAASIVAKVTRDRMMECAGRVYESYGLEKHVGYATVA 192 Query: 184 HQQVIKEKGPS-CIHRLTFRPLRN 206 H+ I + GP +HR +F PL+ Sbjct: 193 HRTAIAKYGPILGLHRYSFAPLKE 216 >gi|229588817|ref|YP_002870936.1| ribonuclease HII [Pseudomonas fluorescens SBW25] gi|229360683|emb|CAY47541.1| ribonuclease HII [Pseudomonas fluorescens SBW25] Length = 206 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 89/191 (46%), Positives = 120/191 (62%), Gaps = 2/191 (1%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 + + VAG+DEVGRG L G VV AA+ILDPN G+NDSKK++ +RE+LY++I Sbjct: 6 SLVAQAHELVAGVDEVGRGPLCGAVVTAAVILDPNRPILGLNDSKKLTEARREKLYDEIC 65 Query: 77 SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 A+ I+ A + ID+ NI AT+ A+ AVE L + P+ A+IDG P+ L + A Sbjct: 66 EKALSWHIARAEVEEIDELNILHATMLAMQRAVEGLHITPKMAMIDGNRCPK-LAMPSEA 124 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V+KGDS +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ Sbjct: 125 VVKGDSKVPAIAAASILAKVSRDREMAAFELIYPGYGMGGHKGYPTPVHLEALARLGPTP 184 Query: 196 IHRLTFRPLRN 206 IHR +F P+R Sbjct: 185 IHRRSFAPVRE 195 >gi|300361596|ref|ZP_07057773.1| ribonuclease H [Lactobacillus gasseri JV-V03] gi|300354215|gb|EFJ70086.1| ribonuclease H [Lactobacillus gasseri JV-V03] Length = 250 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 88/197 (44%), Positives = 127/197 (64%), Gaps = 4/197 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E +KN VAG+DEVGRG LAGPVV AA+IL N +NDSKK+S KKR+ Sbjct: 54 RFSYEKEFWQKN-QLVAGVDEVGRGPLAGPVVTAAVILPHNFDLIDVNDSKKLSPKKRKA 112 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ +I + A+ +S+ A++ ID+ NI++A A+ HAV+ L+V P + L+D ++P ++ Sbjct: 113 LFPQILAKAVSVSVGLANNDVIDRINIYEADRLAMAHAVQGLKVKPAALLVDAMNVPLNI 172 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +I GD+ S SIAAASI+AKV RD LM + YP+Y F + GY T +H + +K Sbjct: 173 P--QIKLIHGDAKSNSIAAASIVAKVFRDNLMDAYGEVYPEYDFKHNAGYGTREHMEALK 230 Query: 190 EKGPSCIHRLTFRPLRN 206 + GP+ IHR +F P+ Sbjct: 231 KYGPTPIHRRSFAPVSE 247 >gi|327470026|gb|EGF15490.1| ribonuclease HII [Streptococcus sanguinis SK330] Length = 254 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 87/197 (44%), Positives = 122/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+ Sbjct: 58 LQHEKELYKAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A+ + I + IDK NI++AT A+ A+ L++ P LID I D+ Sbjct: 118 YQAVLDKALAVGIGLMDNDIIDKVNIYEATKLAMKEALSKLRLKPDYLLIDA--IKLDVE 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM K++P Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMADYDKEFPGYDFAQNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 HGVTPIHRKTFEPIKSM 252 >gi|164688555|ref|ZP_02212583.1| hypothetical protein CLOBAR_02200 [Clostridium bartlettii DSM 16795] gi|164602968|gb|EDQ96433.1| hypothetical protein CLOBAR_02200 [Clostridium bartlettii DSM 16795] Length = 255 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 83/195 (42%), Positives = 116/195 (59%), Gaps = 4/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + G+DE GRG LAGPVV + ++ + INDSKK+S KREEL++ Sbjct: 63 FENEGYANGYLYIGGVDEAGRGPLAGPVVASVVVFEKGTKIPYINDSKKLSEAKREELFD 122 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I A+ I ++ ID++NI AT A+ A+ L+ P L+D +IP DL + Sbjct: 123 IIKEQALDYGIGIVDNEEIDEYNILNATYMAMNKALNALKKKPDYLLLDAVTIP-DLDIK 181 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 F +IKGD+ S+SIA ASI+AKVTRDRLM + YP YGF H GY T +H + I++ G Sbjct: 182 QFPIIKGDAKSISIAGASILAKVTRDRLMYKYDEIYPQYGFKHHKGYGTKEHYEAIEKYG 241 Query: 193 PSCIHRLTFRPLRNL 207 + IHR +F L+N+ Sbjct: 242 ITPIHRKSF--LKNV 254 >gi|42519032|ref|NP_964962.1| ribonuclease HII [Lactobacillus johnsonii NCC 533] gi|73917610|sp|Q74JK1|RNH2_LACJO RecName: Full=Ribonuclease HII; Short=RNase HII gi|41583319|gb|AAS08928.1| ribonuclease HII [Lactobacillus johnsonii NCC 533] Length = 250 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 86/199 (43%), Positives = 127/199 (63%), Gaps = 4/199 (2%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F E +K+ VAG+DEVGRG LAGPVV AA+IL + +NDSKK+S KKR Sbjct: 52 QSRFSYEKEFWQKD-QLVAGVDEVGRGPLAGPVVTAAVILPHDFDLIDVNDSKKLSPKKR 110 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + L+ KI A+ +S+ A++ ID+ NI++A A+ HAV+ L+V P + L+D ++P Sbjct: 111 QALFPKILEKAVSVSVGLANNDVIDQINIYEADRLAMAHAVQGLKVKPDALLVDAMNVPL 170 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 ++P +I GD+ S SIAAASI+AKV RD LM + YP+Y F + GY T +H + Sbjct: 171 NIP--QVKLIHGDAKSNSIAAASIVAKVFRDNLMDAYGELYPEYDFKHNAGYGTREHMEA 228 Query: 188 IKEKGPSCIHRLTFRPLRN 206 +++ GP+ IHR +F P+ Sbjct: 229 LEKYGPTPIHRRSFAPVSE 247 >gi|15603863|ref|NP_246937.1| ribonuclease HII [Pasteurella multocida subsp. multocida str. Pm70] gi|13431849|sp|P57986|RNH2_PASMU RecName: Full=Ribonuclease HII; Short=RNase HII gi|12722439|gb|AAK04082.1| RnhB [Pasteurella multocida subsp. multocida str. Pm70] Length = 197 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 91/188 (48%), Positives = 120/188 (63%), Gaps = 2/188 (1%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 K + +AG+DEVGRG L G VV AA+ILDP+ G+NDSKK+S KKR L E+I A+ Sbjct: 7 KGVELIAGVDEVGRGPLVGAVVTAAVILDPHQPILGLNDSKKLSEKKRLLLAEEIKQKAL 66 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 S+ A + ID+ NI AT+ A+ AVENL++ P L+DG +PE L A A++KG Sbjct: 67 AWSLGRAEAEEIDQLNILHATMLAMKRAVENLKIQPHFVLVDGNRVPE-LMIPAQAIVKG 125 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D + I+AASI+AKV RD+ M K+YP+Y F H GYPTA H + E GP HR Sbjct: 126 DGLVAEISAASILAKVARDQEMAELDKRYPEYAFAQHKGYPTALHLAKLAELGPLAQHRR 185 Query: 200 TFRPLRNL 207 +F P+R L Sbjct: 186 SFAPVRKL 193 >gi|319638850|ref|ZP_07993608.1| ribonuclease HII [Neisseria mucosa C102] gi|317399754|gb|EFV80417.1| ribonuclease HII [Neisseria mucosa C102] Length = 230 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 82/182 (45%), Positives = 109/182 (59%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL + G+ DSKK+S KKR+ L + I A+ SI+ Sbjct: 40 AGVDEAGRGPLVGSVFAAAVILPEHFDLPGLTDSKKLSEKKRDMLAQMIKEQAVAWSIAF 99 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A I + NI AT+ A+ A+E L V+P IDG +P+DL A AV+KGDS + Sbjct: 100 ADPDEILQLNILHATMAAMKRAIEGLSVVPDKVWIDGNRVPKDLNVPAEAVVKGDSKIIE 159 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M K+YP YGFD H GY TA+H +K+ G HR F P++ Sbjct: 160 ISAASVLAKTARDAEMYELAKRYPQYGFDRHKGYGTAQHLAALKQYGVLPEHRRDFAPVK 219 Query: 206 NL 207 L Sbjct: 220 TL 221 >gi|197119787|ref|YP_002140214.1| ribonuclease HII [Geobacter bemidjiensis Bem] gi|254807977|sp|B5EBC6|RNH2_GEOBB RecName: Full=Ribonuclease HII; Short=RNase HII gi|197089147|gb|ACH40418.1| ribonuclease HII [Geobacter bemidjiensis Bem] Length = 230 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 98/210 (46%), Positives = 128/210 (60%), Gaps = 7/210 (3%) Query: 1 MFCNSIPERP--HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN 58 +F ++ PE P LE + + +AGIDE GRG LAGPVV AA++L + G+N Sbjct: 4 LFPDN-PEAPIDLLALEGQALRRGYFRIAGIDEAGRGPLAGPVVAAAVMLPAGLLLPGVN 62 Query: 59 DSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117 DSK+++ +KREEL++ I A+ + + H +D NI +ATL A+ AV L + P Sbjct: 63 DSKQLTEEKREELFDVIHREALAVGVGIGDHALVDSINILQATLSAMRDAVRALSITPGF 122 Query: 118 ALIDGRS-IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 LIDG S IP ++P V KGDS+SLSIAAASIIAKVTRDR+M +YP YGF SH Sbjct: 123 LLIDGISNIPMNIP--QRTVKKGDSLSLSIAAASIIAKVTRDRMMVEYDAQYPGYGFASH 180 Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 GY A H I E GP IHR TF ++ Sbjct: 181 KGYGAASHLAAIAELGPCPIHRKTFSGVKE 210 >gi|29654636|ref|NP_820328.1| ribonuclease HII [Coxiella burnetii RSA 493] gi|153208943|ref|ZP_01947156.1| ribonuclease HII [Coxiella burnetii 'MSU Goat Q177'] gi|154706026|ref|YP_001424775.1| ribonuclease HII [Coxiella burnetii Dugway 5J108-111] gi|161830417|ref|YP_001597185.1| ribonuclease HII [Coxiella burnetii RSA 331] gi|165924003|ref|ZP_02219835.1| ribonuclease HII [Coxiella burnetii RSA 334] gi|212218749|ref|YP_002305536.1| ribonuclease HII [Coxiella burnetii CbuK_Q154] gi|39932366|sp|Q83BZ8|RNH2_COXBU RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043589|sp|A9KGD3|RNH2_COXBN RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043590|sp|A9N8L5|RNH2_COXBR RecName: Full=Ribonuclease HII; Short=RNase HII gi|238056774|sp|B6J7Z2|RNH2_COXB1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|29541904|gb|AAO90842.1| ribonuclease HII [Coxiella burnetii RSA 493] gi|120575601|gb|EAX32225.1| ribonuclease HII [Coxiella burnetii 'MSU Goat Q177'] gi|154355312|gb|ABS76774.1| ribonuclease HII [Coxiella burnetii Dugway 5J108-111] gi|161762284|gb|ABX77926.1| ribonuclease HII [Coxiella burnetii RSA 331] gi|165916548|gb|EDR35152.1| ribonuclease HII [Coxiella burnetii RSA 334] gi|212013011|gb|ACJ20391.1| ribonuclease HII [Coxiella burnetii CbuK_Q154] Length = 202 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 90/186 (48%), Positives = 120/186 (64%), Gaps = 2/186 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DE GRG LAGPV+ AA+IL+P I G+ DSKK+S KKREELYEKI ++ +I Sbjct: 13 LIAGVDEAGRGPLAGPVITAAVILNPEIIIEGLADSKKLSLKKREELYEKIITNCKAFAI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI +ATL A+ A+ L + P LIDG P DLP + A+++GD Sbjct: 73 ARADVEEIDRLNIFRATLLAMQRAINQLSIQPDKVLIDGHCCP-DLPYETQAIVQGDQNV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKVTRDR M +YPDYGF H GY T H I G + +HR +F P Sbjct: 132 PAISAASILAKVTRDREMLKYDAQYPDYGFAIHKGYGTKAHLAAIHRFGITPVHRKSFEP 191 Query: 204 LRNLSV 209 +R L + Sbjct: 192 VRQLKL 197 >gi|294648443|ref|ZP_06725932.1| ribonuclease HII [Acinetobacter haemolyticus ATCC 19194] gi|292825668|gb|EFF84382.1| ribonuclease HII [Acinetobacter haemolyticus ATCC 19194] Length = 200 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 86/190 (45%), Positives = 119/190 (62%), Gaps = 1/190 (0%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77 + E+ +AG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I Sbjct: 7 LVERCNMTIAGVDEAGRGPLVGSVVAAAVILDPNNPIEGLNDSKKLTEKKREKLFAEIQE 66 Query: 78 SAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 A+ SI+ ASH ID+ NI +AT A+ AVE L P ++DG IP+ + A+ Sbjct: 67 KALAWSIAEASHVEIDEFNILQATFLAMRRAVEALATQPAKVIVDGNQIPKGINIPCEAI 126 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 + GD+ I+AASI+AKVTRDR M+ +YP+YGF H GYPT H + I G Sbjct: 127 VGGDATHAEISAASILAKVTRDRQMKALDLEYPNYGFAKHKGYPTKAHFEAIAIHGVIDE 186 Query: 197 HRLTFRPLRN 206 HR ++ P++ Sbjct: 187 HRRSYGPVKK 196 >gi|167040339|ref|YP_001663324.1| ribonuclease HII [Thermoanaerobacter sp. X514] gi|300914423|ref|ZP_07131739.1| Ribonuclease H [Thermoanaerobacter sp. X561] gi|307724341|ref|YP_003904092.1| Ribonuclease H [Thermoanaerobacter sp. X513] gi|166854579|gb|ABY92988.1| Ribonuclease H [Thermoanaerobacter sp. X514] gi|300889358|gb|EFK84504.1| Ribonuclease H [Thermoanaerobacter sp. X561] gi|307581402|gb|ADN54801.1| Ribonuclease H [Thermoanaerobacter sp. X513] Length = 242 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 84/189 (44%), Positives = 114/189 (60%), Gaps = 2/189 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + N+ +AG+DE GRG L GPVV A +IL INDSKK+S +KRE L E Sbjct: 48 YENQLYQLNLNFIAGVDEAGRGPLVGPVVAACVILPKEVFIPEINDSKKLSEEKREVLSE 107 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI +I + IDK NI AT A+ A+ +Q L+D +IP+ + Sbjct: 108 VIKKVAISYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQ-IEIN 166 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A++KGDS S+SIAAASI+AKV RD++M+ HK YP Y F+ + GY T +H + +K+ G Sbjct: 167 QKAIVKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYG 226 Query: 193 PSCIHRLTF 201 P IHR TF Sbjct: 227 PCPIHRKTF 235 >gi|154483562|ref|ZP_02026010.1| hypothetical protein EUBVEN_01266 [Eubacterium ventriosum ATCC 27560] gi|149735472|gb|EDM51358.1| hypothetical protein EUBVEN_01266 [Eubacterium ventriosum ATCC 27560] Length = 251 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 90/190 (47%), Positives = 119/190 (62%), Gaps = 4/190 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + + GIDEVGRG LAGPVV A+IL N INDSKK+S KKREELY Sbjct: 60 EFERKY--SDYEFICGIDEVGRGPLAGPVVAGAVILPKNCDILYINDSKKLSAKKREELY 117 Query: 73 EKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I A+ + + S + ID+ NI +AT +A+ A+ L+ P L D +IP +P Sbjct: 118 EVIMEKAVCAKTAVVSPKVIDEINILQATYEAMRQAISMLEPQPTLLLNDAVNIP-GVPM 176 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++IKGD+ S+SI AASIIAKVTRD +M K YP+Y F S+ GY +AKH + +K+ Sbjct: 177 KQVSIIKGDAKSISIGAASIIAKVTRDAMMVEYDKIYPEYDFASNKGYGSAKHIEALKKY 236 Query: 192 GPSCIHRLTF 201 GP IHR +F Sbjct: 237 GPCPIHRKSF 246 >gi|315222958|ref|ZP_07864837.1| ribonuclease HII [Streptococcus anginosus F0211] gi|315187908|gb|EFU21644.1| ribonuclease HII [Streptococcus anginosus F0211] Length = 260 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 92/197 (46%), Positives = 123/197 (62%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI KK EE+ Sbjct: 58 LRYEKELYATGCQYIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHEEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+++ A+ + I +Q IDK NI++AT A+ AV NL++ P+ LID + D+ Sbjct: 118 YQEVLKQAVAVGIGVKDNQVIDKVNIYEATKLAMLEAVGNLEISPQHLLIDAMQL--DVQ 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRDR+M YP Y F +VGY T H +K Sbjct: 176 VSQTSIIKGDANSLSIAAASIVAKVTRDRMMTDYELTYPGYDFTHNVGYGTQHHLDGLKR 235 Query: 191 KGPSCIHRLTFRPLRNL 207 KG + IHR TF P++++ Sbjct: 236 KGITPIHRKTFEPIKSM 252 >gi|322507786|gb|ADX03240.1| rnhB [Acinetobacter baumannii 1656-2] Length = 188 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 84/184 (45%), Positives = 117/184 (63%), Gaps = 1/184 (0%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A+ S Sbjct: 1 MFVAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWS 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A+H ID+ NI +AT A+ AVE L+ P+ ++DG IP+ + A++ GD+ Sbjct: 61 IAEATHAEIDELNILQATFLAMQRAVEGLKTQPQKVIVDGNQIPKGIIIPCEAIVGGDAS 120 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M ++YP +GF H GYPT H + I G HR ++ Sbjct: 121 HAEISAASILAKVTRDRQMAELDQQYPLFGFAKHQGYPTKAHFEAIAAHGVIDQHRRSYA 180 Query: 203 PLRN 206 P++ Sbjct: 181 PVKR 184 >gi|123443471|ref|YP_001007444.1| ribonuclease HII [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166226668|sp|A1JP66|RNH2_YERE8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|122090432|emb|CAL13300.1| ribonuclease HII [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 198 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 115/184 (62%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++IT A+ S+ Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEITDKALSWSL 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L + P LIDG P+ L + AV+KGDS Sbjct: 72 GRAEPEEIDQLNILHATMLAMQRAVAGLHIAPDYVLIDGNRCPK-LAMPSLAVVKGDSRV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M ++P+YGF H GYPTA H + + G + HR +F P Sbjct: 131 AEISAASILAKVTRDREMTELDLQFPEYGFAQHKGYPTAVHLEKLTTFGATEHHRRSFGP 190 Query: 204 LRNL 207 ++ + Sbjct: 191 VKRV 194 >gi|332160606|ref|YP_004297183.1| ribonuclease HII [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664836|gb|ADZ41480.1| ribonuclease HII [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859613|emb|CBX69953.1| ribonuclease HII [Yersinia enterocolitica W22703] Length = 198 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 114/184 (61%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++IT A+ S+ Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEITDKALSWSL 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L + P LIDG P+ L + AV+KGDS Sbjct: 72 GRAEPEEIDQLNILHATMLAMQRAVAGLHIAPDYVLIDGNRCPK-LTMPSLAVVKGDSRV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M ++P+YGF H GYPTA H + G + HR +F P Sbjct: 131 AEISAASILAKVTRDREMTELDLQFPEYGFAQHKGYPTAVHLDKLTTFGATEHHRRSFGP 190 Query: 204 LRNL 207 ++ + Sbjct: 191 VKRV 194 >gi|224370178|ref|YP_002604342.1| RnhB [Desulfobacterium autotrophicum HRM2] gi|223692895|gb|ACN16178.1| RnhB [Desulfobacterium autotrophicum HRM2] Length = 197 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 90/194 (46%), Positives = 122/194 (62%), Gaps = 2/194 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + +AG+DE GRG LAGPVV AA++LD GI DSKK+S KKRE L Sbjct: 2 WTFEHRAQAAGYNCIAGVDEAGRGPLAGPVVSAAVVLDDGFPDHGIMDSKKLSPKKRELL 61 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ + + ASH ID+ NI +A+L ++ AV L + P LIDG + D Sbjct: 62 YDVIMDKALGVCVGIASHHEIDRINILRASLLSMRRAVNGLPLKPDYLLIDG-TFFIDSS 120 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 Q ++KGD++S+SIAAASI+AKVTRDR+M + YP YGF H GYPT H+Q + E Sbjct: 121 IQQQVIVKGDALSVSIAAASIVAKVTRDRIMVDMDQLYPGYGFARHKGYPTKAHKQALVE 180 Query: 191 KGPSCIHRLTFRPL 204 GPS +HR +F+ + Sbjct: 181 LGPSPVHRYSFKGV 194 >gi|89070017|ref|ZP_01157348.1| ribonuclease HII [Oceanicola granulosus HTCC2516] gi|89044354|gb|EAR50492.1| ribonuclease HII [Oceanicola granulosus HTCC2516] Length = 211 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 80/197 (40%), Positives = 121/197 (61%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 E ++ +AG+DEVGRG LAGPV AA++LDP IP G+ DSK + +RE Sbjct: 6 DLSFETRALQRGFARIAGVDEVGRGPLAGPVTAAAVVLDPARIPEGLADSKALPRARREA 65 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 L ++ A ++++ S ID HNI +A+ A+ A+ L+ ALIDG +P DL Sbjct: 66 LDAELREVACVAVAHCSVAEIDTHNILRASHIAMCRALAALEQTCDHALIDGNMLPRDLA 125 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 C A++KGD+ LSIAAASI+AKV RDR+M +++P YG+++++GY T H+ ++ Sbjct: 126 CSGEALVKGDARCLSIAAASIVAKVARDRIMVDLAQQHPGYGWETNMGYGTKGHRSALQN 185 Query: 191 KGPSCIHRLTFRPLRNL 207 G + HR +F P+ N+ Sbjct: 186 LGVTPHHRRSFAPIYNI 202 >gi|227893503|ref|ZP_04011308.1| ribonuclease HII [Lactobacillus ultunensis DSM 16047] gi|227864673|gb|EEJ72094.1| ribonuclease HII [Lactobacillus ultunensis DSM 16047] Length = 250 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 89/199 (44%), Positives = 122/199 (61%), Gaps = 4/199 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 F E +KN V G+DEVGRG LAGPVV AA+I+D + +NDSKK+S ++R Sbjct: 53 KRFSYEKEFWQKN-QCVGGVDEVGRGPLAGPVVTAAVIIDQDFDLLDVNDSKKLSPERRL 111 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +LY KI A+ + I S ID+ NI++A A+ AV L + P + L+D + D Sbjct: 112 KLYPKILEEAVSVGIGVKSPAVIDQINIYEADRQAMAQAVRALNIKPDALLVDAMDVSVD 171 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LP +IKGD+ S SIAAASI+AKV RD+LM K YP YGF ++ GY T +H + + Sbjct: 172 LP--QVKLIKGDAKSNSIAAASIVAKVFRDKLMDDYAKIYPQYGFPNNAGYGTKEHIEAL 229 Query: 189 KEKGPSCIHRLTFRPLRNL 207 K+ GP+ IHR TF P+ + Sbjct: 230 KKYGPTPIHRKTFAPVSDF 248 >gi|37524687|ref|NP_928031.1| ribonuclease HII [Photorhabdus luminescens subsp. laumondii TTO1] gi|39932267|sp|Q7N8N3|RNH2_PHOLL RecName: Full=Ribonuclease HII; Short=RNase HII gi|36784112|emb|CAE12981.1| Ribonuclease HII (RNase HII) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 196 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 89/183 (48%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+RE LY +IT A+ S+ Sbjct: 10 LIAGVDEVGRGPLVGAVVTAAVILDPLQPIVGLADSKKLSEKRREALYLEITEKALCWSL 69 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV NL + P LIDG P+ LP A AVIKGD + Sbjct: 70 GRAEPAEIDQLNILHATMLAMQRAVANLPISPEYVLIDGNRCPK-LPMPAQAVIKGDGLV 128 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M + +P+YGF H GYPTA H + + + G + HR +F P Sbjct: 129 AEISAASIVAKVTRDREMAELDQLFPEYGFAKHKGYPTAFHLEKLVQLGATEHHRKSFAP 188 Query: 204 LRN 206 ++ Sbjct: 189 VKR 191 >gi|325125945|gb|ADY85275.1| Ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 256 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 89/198 (44%), Positives = 121/198 (61%), Gaps = 4/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E K V G+DEVGRG LAGPVV AA+IL + +NDSKK+S +KR Sbjct: 55 RFSYEKDFWAKG-QLVGGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLA 113 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY KI A+ + + ++ ID+ NI++A A+ AVE L + P + L+D ++P DL Sbjct: 114 LYPKILQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSIRPDALLVDAMNVPVDL 173 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +IKGD+ S SIAAASI+AKV RD LM + YPDY FD + GY T H + ++ Sbjct: 174 P--QLELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALR 231 Query: 190 EKGPSCIHRLTFRPLRNL 207 + GP+ IHRLTF P+ + Sbjct: 232 KYGPTPIHRLTFSPVSEM 249 >gi|119946583|ref|YP_944263.1| ribonuclease H [Psychromonas ingrahamii 37] gi|189043643|sp|A1SYU9|RNH2_PSYIN RecName: Full=Ribonuclease HII; Short=RNase HII gi|119865187|gb|ABM04664.1| RNase HII [Psychromonas ingrahamii 37] Length = 204 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 83/186 (44%), Positives = 114/186 (61%), Gaps = 2/186 (1%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81 +AG+DEVGRG L G VV A +ILD NN G+ DSKK+S KK L+++I A+ + Sbjct: 16 FTLIAGVDEVGRGPLVGDVVTACVILDANNPISGLADSKKLSEKKLALLFDEIQEKALFV 75 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 ++ AS ID NI AT+ A+ AV+NL + P IDG P+ L +V+KGD+ Sbjct: 76 AVGRASPVEIDALNILHATMLAMQRAVDNLSISPEFVFIDGNRCPQ-LSMPCESVVKGDA 134 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I+AASIIAKVTRDR M K+YP YGF H GYPT H I++ G + +R +F Sbjct: 135 RVAEISAASIIAKVTRDREMCELDKQYPHYGFAKHKGYPTKAHFAAIEKHGVTPEYRKSF 194 Query: 202 RPLRNL 207 +P++ + Sbjct: 195 KPVKKV 200 >gi|71903522|ref|YP_280325.1| ribonuclease HII [Streptococcus pyogenes MGAS6180] gi|97189348|sp|Q48TJ0|RNH2_STRPM RecName: Full=Ribonuclease HII; Short=RNase HII gi|71802617|gb|AAX71970.1| ribonuclease HII [Streptococcus pyogenes MGAS6180] Length = 238 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 82/200 (41%), Positives = 122/200 (61%), Gaps = 6/200 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ +AGIDEVGRG LAGPVV A +IL + G+NDSKKI K E + Sbjct: 34 LSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKSKHETI 93 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127 Y+ + A+ I I +Q ID+ NI++AT A+ A++ L+ P LID ++ Sbjct: 94 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTL-- 151 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D+ +++KGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T +H Q Sbjct: 152 DIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQG 211 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 +K G + IHR +F P++++ Sbjct: 212 LKAYGITPIHRKSFEPVKSM 231 >gi|308173568|ref|YP_003920273.1| ribonuclease HII [Bacillus amyloliquefaciens DSM 7] gi|307606432|emb|CBI42803.1| ribonuclease HII [Bacillus amyloliquefaciens DSM 7] gi|328553499|gb|AEB23991.1| ribonuclease HII [Bacillus amyloliquefaciens TA208] gi|328911709|gb|AEB63305.1| ribonuclease HII [Bacillus amyloliquefaciens LL3] Length = 255 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 86/195 (44%), Positives = 116/195 (59%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + +K +AG+DE GRG LAGPVV A+IL G+ DSKK+S KK EE Y Sbjct: 61 AYERLSYKKGFRLIAGVDEAGRGPLAGPVVAGAVILPAQCEILGLTDSKKLSEKKLEEYY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +IT A I + ID+ NI++A A+ AV L P L D ++P D+P Sbjct: 121 TRITEEAAAIGVGIVHADVIDRINIYEAARLAMVKAVNALAETPDYLLADAMTLPLDIP- 179 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +VIKGD+ S+SIAA + IAKVTRDRLM K YP YGF+ + GY T +H + ++ Sbjct: 180 -QSSVIKGDAKSVSIAAGACIAKVTRDRLMAEYAKTYPMYGFEKNKGYGTKEHLEALQAY 238 Query: 192 GPSCIHRLTFRPLRN 206 GP+ IHR TF P+++ Sbjct: 239 GPTNIHRKTFAPVQS 253 >gi|70728572|ref|YP_258321.1| ribonuclease HII [Pseudomonas fluorescens Pf-5] gi|97189183|sp|Q4KHG2|RNH2_PSEF5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|68342871|gb|AAY90477.1| ribonuclease HII [Pseudomonas fluorescens Pf-5] Length = 217 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 89/183 (48%), Positives = 117/183 (63%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+L+++I A+ I Sbjct: 23 LVAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKLFDEICEKALSWCI 82 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI AT+ A+ AVE L V P+ A+IDG P+ L A AV+KGDS Sbjct: 83 ARAEVEEIDELNILHATMLAMQRAVEGLSVTPKLAMIDGNRCPK-LAMPAEAVVKGDSKV 141 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P Sbjct: 142 PAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 201 Query: 204 LRN 206 +R Sbjct: 202 VRQ 204 >gi|170023329|ref|YP_001719834.1| ribonuclease HII [Yersinia pseudotuberculosis YPIII] gi|238688489|sp|B1JQH4|RNH2_YERPY RecName: Full=Ribonuclease HII; Short=RNase HII gi|169749863|gb|ACA67381.1| Ribonuclease H [Yersinia pseudotuberculosis YPIII] Length = 198 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 115/184 (62%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDPN G+ DSKK+S K+R LY++IT A+ S+ Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVILDPNRPIVGLADSKKLSEKRRLSLYDEITEKALSWSL 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI A + A+ AV L ++P LIDG P+ L + AV+KGDS Sbjct: 72 GRAEPEEIDQLNILHAAMLAMQRAVSGLHIVPDYVLIDGNRCPK-LQMPSLAVVKGDSRV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M +P+YGF H GYPTA H + + G + HR +F P Sbjct: 131 AEISAASILAKVTRDREMTELDLLFPEYGFAQHKGYPTAFHLEKLAALGATVHHRRSFGP 190 Query: 204 LRNL 207 ++ + Sbjct: 191 VKRV 194 >gi|226952655|ref|ZP_03823119.1| ribonuclease HII [Acinetobacter sp. ATCC 27244] gi|226836592|gb|EEH68975.1| ribonuclease HII [Acinetobacter sp. ATCC 27244] Length = 200 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 86/190 (45%), Positives = 119/190 (62%), Gaps = 1/190 (0%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77 + E+ +AG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I Sbjct: 7 LVERCNMTIAGVDEAGRGPLVGSVVAAAVILDPNNPIEGLNDSKKLTEKKREKLFAEIQE 66 Query: 78 SAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 A+ SI+ ASH ID+ NI +AT A+ AVE L P ++DG IP+ + A+ Sbjct: 67 KALAWSIAEASHVEIDEFNILQATFLAMRRAVEALATQPAKVIVDGNQIPKGITIPCEAI 126 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 + GD+ I+AASI+AKVTRDR M+ +YP+YGF H GYPT H + I G Sbjct: 127 VGGDASHAEISAASILAKVTRDRQMKALDLEYPNYGFAKHKGYPTKAHFEAIAIHGVIDE 186 Query: 197 HRLTFRPLRN 206 HR ++ P++ Sbjct: 187 HRRSYGPVKK 196 >gi|306825207|ref|ZP_07458549.1| ribonuclease HII [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432643|gb|EFM35617.1| ribonuclease HII [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 259 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 122/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AG+DEVGRG LAGPVV AA+IL G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGVDEVGRGPLAGPVVAAAVILPKKCKIRGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A+ I I + ID+ NI++AT A+ A+ L P LID + +LP Sbjct: 118 YQAVQDQALAIGIGIKDNHIIDQVNIYEATKLAMKEAISQLSPQPEHLLIDAMKL--ELP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD+ SLSIAAASI+AKVTRD +M+ +YP Y F ++ GY TAKH + +++ Sbjct: 176 ISQTAIIKGDANSLSIAAASIVAKVTRDNIMKDYDNQYPGYDFRANAGYGTAKHLEGLEK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++ L Sbjct: 236 LGVTQIHRTSFEPVKTL 252 >gi|116629569|ref|YP_814741.1| ribonuclease HII [Lactobacillus gasseri ATCC 33323] gi|311110787|ref|ZP_07712184.1| ribonuclease HII [Lactobacillus gasseri MV-22] gi|122273493|sp|Q043R9|RNH2_LACGA RecName: Full=Ribonuclease HII; Short=RNase HII gi|116095151|gb|ABJ60303.1| RNase HII [Lactobacillus gasseri ATCC 33323] gi|311065941|gb|EFQ46281.1| ribonuclease HII [Lactobacillus gasseri MV-22] Length = 250 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 89/197 (45%), Positives = 128/197 (64%), Gaps = 4/197 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E +K+ VAG+DEVGRG LAGPVV AA+IL N +NDSKK+S KKR+E Sbjct: 54 RFSYEKKFWQKS-QLVAGVDEVGRGPLAGPVVTAAVILPHNFDLIDVNDSKKLSPKKRKE 112 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ KI + A+ +S+ A++ ID+ NI++A A+ HAV+ L+V P + L+D ++P ++ Sbjct: 113 LFPKILAKAVSVSVGLANNDVIDRINIYEADRLAMAHAVQGLKVKPDALLVDAMNVPLNI 172 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +I GD+ S SIAAASI+AKV RD LM + YP+Y F + GY T +H + +K Sbjct: 173 P--QVKLIHGDAKSNSIAAASIVAKVFRDNLMDAYGEVYPEYDFKHNAGYGTREHMEALK 230 Query: 190 EKGPSCIHRLTFRPLRN 206 + GP+ IHR +F P+ Sbjct: 231 KYGPTPIHRRSFAPVSE 247 >gi|327460345|gb|EGF06682.1| ribonuclease HII [Streptococcus sanguinis SK1057] Length = 254 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 84/197 (42%), Positives = 122/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +++ Sbjct: 58 LRYEKELYQAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQDI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A+ + I + ID+ NI++AT A+ A+ L++ LID + D+P Sbjct: 118 YQAVMDKALAVGIGLMDSEIIDQVNIYEATKLAMKEALSKLRLKSDYLLIDAMKLDVDIP 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM K++P Y F + GY T H Q +++ Sbjct: 178 --QESIIKGDANSLSIAAASIVAKVTRDKLMTDYDKEFPGYDFAQNAGYGTKSHLQGLEQ 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 NGVTPIHRKTFEPVKSM 252 >gi|325694493|gb|EGD36402.1| ribonuclease HII [Streptococcus sanguinis SK150] Length = 254 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 122/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+ Sbjct: 58 LRYEKELYQAGYRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHDEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+++ A+ + + + IDK NI++AT A+ A+ L++ P LID + D+ Sbjct: 118 YQEVMDKALAVGVGLMDSKIIDKVNIYQATKLAMKDALSRLKIEPDYLLIDAMKL--DVE 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM K++P Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMADYDKEFPGYDFSQNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 NGVTPIHRKTFEPVKSM 252 >gi|329667434|gb|AEB93382.1| ribonuclease HII [Lactobacillus johnsonii DPC 6026] Length = 250 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 127/199 (63%), Gaps = 4/199 (2%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F E +K+ VAG+DEVGRG LAGPVV AA+IL + +NDSKK+S KKR Sbjct: 52 QSRFSYEKEFWQKD-QLVAGVDEVGRGPLAGPVVTAAVILPHDFDLIDVNDSKKLSPKKR 110 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + L+ KI A+ +S+ A++ ID+ NI++A A+ HAV+ L+V P + L+D ++P Sbjct: 111 QALFPKILEKAVSVSVGLANNDVIDQINIYEADRVAMAHAVQGLKVKPDALLVDAMNVPL 170 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 ++P +I GD+ S SIAAASI+AKV RD LM + YP+Y F + GY T +H + Sbjct: 171 NIP--QVKLIHGDAKSNSIAAASIVAKVFRDNLMDAYGELYPEYDFKHNAGYGTREHMEA 228 Query: 188 IKEKGPSCIHRLTFRPLRN 206 +K+ GP+ IHR +F P+ Sbjct: 229 LKKYGPTPIHRRSFAPVSE 247 >gi|326794449|ref|YP_004312269.1| ribonuclease H [Marinomonas mediterranea MMB-1] gi|326545213|gb|ADZ90433.1| Ribonuclease H [Marinomonas mediterranea MMB-1] Length = 203 Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 97/183 (53%), Positives = 123/183 (67%), Gaps = 1/183 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DE GRG LAG VV AA+ILDP+ G+NDSKK+S KKRE LY +I A+ SI Sbjct: 16 LVAGVDEAGRGPLAGDVVAAAVILDPDLTIDGLNDSKKLSEKKRERLYSQIIEKALSFSI 75 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + AS ID+ NI A++ A+ AV +L V ALIDG IP DL C A AV+KGD+ Sbjct: 76 ARASVAEIDELNILHASMLAMTRAVNSLPVPAEHALIDGNRIPLDLKCPAEAVVKGDARH 135 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKVTRDR + + +KYP+Y F+ H GYPTA H IK+ G IHR +F P Sbjct: 136 QAIAAASILAKVTRDREIVLMAEKYPEYAFEKHKGYPTAVHLDAIKQHGVCEIHRTSFGP 195 Query: 204 LRN 206 ++ Sbjct: 196 VKR 198 >gi|268319575|ref|YP_003293231.1| hypothetical protein FI9785_1100 [Lactobacillus johnsonii FI9785] gi|262397950|emb|CAX66964.1| rnhB [Lactobacillus johnsonii FI9785] Length = 250 Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 127/199 (63%), Gaps = 4/199 (2%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F E +K+ VAG+DEVGRG LAGPVV AA+IL + +NDSKK+S KKR Sbjct: 52 QSRFSYEKEFWQKD-QLVAGVDEVGRGPLAGPVVTAAVILPHDFDLIDVNDSKKLSPKKR 110 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + L+ KI A+ +S+ A++ ID+ NI++A A+ HAV+ L+V P + L+D ++P Sbjct: 111 QALFPKILEKAVSVSVGLANNDLIDQINIYEADRVAMAHAVQGLKVKPDALLVDAMNVPL 170 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 ++P +I GD+ S SIAAASI+AKV RD LM + YP+Y F + GY T +H + Sbjct: 171 NIP--QVKLIHGDAKSNSIAAASIVAKVFRDNLMDAYGELYPEYDFKHNAGYGTREHMEA 228 Query: 188 IKEKGPSCIHRLTFRPLRN 206 +K+ GP+ IHR +F P+ Sbjct: 229 LKKYGPTPIHRRSFAPVSE 247 >gi|104774162|ref|YP_619142.1| ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|123077255|sp|Q1G9U8|RNH2_LACDA RecName: Full=Ribonuclease HII; Short=RNase HII gi|103423243|emb|CAI98076.1| Ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 256 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 89/198 (44%), Positives = 120/198 (60%), Gaps = 4/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E K V G+DEVGRG LAGPVV AA+IL + +NDSKK+S +KR Sbjct: 55 RFSYEKDFWAKG-QLVGGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLA 113 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY KI A+ + + ++ ID+ NI++A A+ AVE L P + L+D ++P DL Sbjct: 114 LYPKILQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSTRPDALLVDAMNVPVDL 173 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +IKGD+ S SIAAASI+AKV RD LM + YPDY FD + GY T H + ++ Sbjct: 174 P--QLELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALR 231 Query: 190 EKGPSCIHRLTFRPLRNL 207 + GP+ IHRLTF P+ + Sbjct: 232 KYGPTPIHRLTFSPVSEM 249 >gi|56698275|ref|YP_168648.1| ribonuclease HII [Ruegeria pomeroyi DSS-3] gi|81348925|sp|Q5LMW0|RNH2_SILPO RecName: Full=Ribonuclease HII; Short=RNase HII gi|56680012|gb|AAV96678.1| ribonuclease HII [Ruegeria pomeroyi DSS-3] Length = 234 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 92/199 (46%), Positives = 132/199 (66%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P ++LEA + + +AG+DEVGRG LAGPVV AA++LDP IP G+NDSKK++ +R Sbjct: 32 QPDYQLEAALAAQGHIRIAGVDEVGRGPLAGPVVAAAVVLDPGAIPEGLNDSKKLTAARR 91 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E LY+ + ++A +SI+ AS + ID NI +A+ A+ AV L P LIDG IP Sbjct: 92 ERLYDILHANAQVSIAEASVEEIDALNILRASHLAMERAVAALNPAPDFLLIDGNLIPAG 151 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L C A AVIKGD S+SIAAASI+AK RDRLM +++P YG++ + GYPT +H+ + Sbjct: 152 LSCPAEAVIKGDGRSVSIAAASIVAKTWRDRLMVDLAQQHPGYGWERNAGYPTKEHRSAL 211 Query: 189 KEKGPSCIHRLTFRPLRNL 207 + G + HR +F+ + + Sbjct: 212 QNLGVTPHHRRSFKTVHKI 230 >gi|317493174|ref|ZP_07951597.1| ribonuclease HII [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918834|gb|EFV40170.1| ribonuclease HII [Enterobacteriaceae bacterium 9_2_54FAA] Length = 207 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 87/185 (47%), Positives = 116/185 (62%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LYE+I A+ S Sbjct: 21 QFIAGVDEVGRGPLVGAVVTAAVILDPARPIIGLADSKKLSEKRRNALYEEIVEKALSWS 80 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L V P LIDG P+ LP + AV+KGDS Sbjct: 81 LGRAEPHEIDELNILHATMLAMQRAVAGLSVEPDYVLIDGNRCPK-LPMASQAVVKGDSR 139 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M + ++P+YGF H GYPTA H + + + G + HR +F Sbjct: 140 VAEISAASILAKVTRDREMEVLDAQFPEYGFAQHKGYPTAFHLERLAQLGATVHHRRSFG 199 Query: 203 PLRNL 207 P++ + Sbjct: 200 PVKRV 204 >gi|255348391|ref|ZP_05380398.1| ribonuclease HII [Chlamydia trachomatis 70] gi|255502932|ref|ZP_05381322.1| ribonuclease HII [Chlamydia trachomatis 70s] Length = 217 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 88/195 (45%), Positives = 117/195 (60%), Gaps = 4/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E E+ VAGIDE GRG LAGPVV A IL + GI+DSKK++ K+R LYE Sbjct: 17 FENQAIEQGYSQVAGIDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQRRYLYE 76 Query: 74 KITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + S + ID+ NI +AT +A+ A+ +L+ P L+DG +P +P Sbjct: 77 LLLEDPEVDCGVGVVSVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLFLPHKIP- 135 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGD+ S+SIAAASIIAK RD LMR H +YP+YGFD H GY TA H Q +K Sbjct: 136 -SLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHLQALKHF 194 Query: 192 GPSCIHRLTFRPLRN 206 GP HR +F P++ Sbjct: 195 GPCVHHRKSFSPVKE 209 >gi|15834918|ref|NP_296677.1| ribonuclease HII [Chlamydia muridarum Nigg] gi|270285088|ref|ZP_06194482.1| ribonuclease HII [Chlamydia muridarum Nigg] gi|270289111|ref|ZP_06195413.1| ribonuclease HII [Chlamydia muridarum Weiss] gi|301336484|ref|ZP_07224686.1| ribonuclease HII [Chlamydia muridarum MopnTet14] gi|11387107|sp|Q9PL10|RNH2_CHLMU RecName: Full=Ribonuclease HII; Short=RNase HII gi|8163191|gb|AAF73545.1| ribonuclease HII [Chlamydia muridarum Nigg] Length = 217 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 87/195 (44%), Positives = 118/195 (60%), Gaps = 4/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E ++ +AG+DE GRG LAGPVV A IL + GI+DSKK+S K+R LYE Sbjct: 17 FEDQAIKQGYSRIAGVDEAGRGPLAGPVVAGACILPGGKLFLGIDDSKKLSPKQRRYLYE 76 Query: 74 KITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + S + ID+ NI +AT +A+ A+ +L+ P L+DG +P ++PC Sbjct: 77 LLLEDPEVTCGVGVVSVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLFLPHEIPC 136 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGDS S+SIAAASIIAK RD LMR H +YP+YGFD H GY T H Q +K+ Sbjct: 137 --LKIIKGDSRSVSIAAASIIAKEYRDELMRKLHSEYPEYGFDKHKGYGTVAHLQALKQF 194 Query: 192 GPSCIHRLTFRPLRN 206 GP HR +F P++ Sbjct: 195 GPCVYHRKSFSPVKE 209 >gi|328946298|gb|EGG40442.1| ribonuclease HII [Streptococcus sanguinis SK1087] Length = 254 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 84/197 (42%), Positives = 122/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +++ Sbjct: 58 LRYEKELYQAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKINGLNDSKKIPKKKHQDI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A+ + I + + ID+ NI++AT A+ A+ L++ LID + D+P Sbjct: 118 YQAVMDKALAVGIGLMNSEIIDQVNIYEATKLAMKEALSKLRLKSDYLLIDAMKLDVDIP 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM K++P Y F + GY T H Q ++ Sbjct: 178 --QESIIKGDANSLSIAAASIVAKVTRDKLMTDYDKEFPGYDFAQNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 HGVTPIHRKTFEPVKSM 252 >gi|261379547|ref|ZP_05984120.1| ribonuclease HII [Neisseria subflava NJ9703] gi|284798018|gb|EFC53365.1| ribonuclease HII [Neisseria subflava NJ9703] Length = 208 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 83/182 (45%), Positives = 108/182 (59%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL + G+ DSKK+S KKR+ L + I A+ SI+ Sbjct: 18 AGVDEAGRGPLVGSVFAAAVILPEHFDLPGLTDSKKLSEKKRDMLAQMIKEQAVAWSIAF 77 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A I + NI AT+ A+ AVE L V P IDG +P+DL A AV+KGDS + Sbjct: 78 ADPDEILQLNILHATMAAMKRAVEGLSVTPDKVWIDGNRVPKDLNVPAEAVVKGDSKIIE 137 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M K+YP YGFD H GY TA+H +K+ G HR F P++ Sbjct: 138 ISAASVLAKTARDAEMYELAKRYPQYGFDRHKGYGTAQHLAALKQYGVLPEHRRNFAPVK 197 Query: 206 NL 207 L Sbjct: 198 TL 199 >gi|300724780|ref|YP_003714105.1| RNAse HII [Xenorhabdus nematophila ATCC 19061] gi|297631322|emb|CBJ92017.1| RNAse HII [Xenorhabdus nematophila ATCC 19061] Length = 196 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 85/183 (46%), Positives = 114/183 (62%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP G+ DSKK++ K+RE LY +I A+ S+ Sbjct: 10 LIAGVDEVGRGPLVGDVVTAAVILDPAKPITGLMDSKKLTEKRREALYLEIKEKALCWSL 69 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L ++P LIDG P L + AV+KGDS+ Sbjct: 70 GRAEPEEIDQLNILHATMLAMQRAVAGLVIVPDYVLIDGNRCPA-LAMPSQAVVKGDSLV 128 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M ++PDYGF H GYPTA H + + G + HR +F P Sbjct: 129 AEISAASILAKVTRDREMAELDNQFPDYGFAKHKGYPTALHLEKLALHGATAHHRKSFAP 188 Query: 204 LRN 206 ++ Sbjct: 189 VKR 191 >gi|49473986|ref|YP_032028.1| ribonuclease HII [Bartonella quintana str. Toulouse] gi|81647195|sp|Q6G0E6|RNH2_BARQU RecName: Full=Ribonuclease HII; Short=RNase HII gi|49239489|emb|CAF25842.1| Ribonuclease HII [Bartonella quintana str. Toulouse] Length = 223 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 102/203 (50%), Positives = 144/203 (70%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 ++P +P+F E ++++ + +AG+DEVGRG LAGPVV AA+ILD +++P G+NDSKK+S Sbjct: 13 NLPLKPNFSCELDLQKQGFFHIAGVDEVGRGPLAGPVVTAAVILDKDHVPDGLNDSKKLS 72 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 ++R ELY +I SA+ +SI+S + ID+ +I KATL+A+ V L + ALIDGR Sbjct: 73 AQRRNELYCEILQSALAVSIASLCARTIDQSDIRKATLEAMRRCVTGLAIPAHYALIDGR 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 IP LPC A A+IKGD S+SIAAASIIAKVTRDR+M+ A + Y +YG + HVGY T Sbjct: 133 DIPFQLPCPATALIKGDQHSVSIAAASIIAKVTRDRMMKCAGQIYKNYGLEKHVGYATLA 192 Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205 H+ + + GP +HR +F PL+ Sbjct: 193 HRIALDKYGPVVGLHRYSFAPLK 215 >gi|282852052|ref|ZP_06261410.1| ribonuclease HII [Lactobacillus gasseri 224-1] gi|282556812|gb|EFB62416.1| ribonuclease HII [Lactobacillus gasseri 224-1] Length = 250 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 88/197 (44%), Positives = 127/197 (64%), Gaps = 4/197 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E +K+ VAG+DEVGRG LAGPVV AA+IL N +NDSKK+S KKR+E Sbjct: 54 RFSYEKKFWQKS-QLVAGVDEVGRGPLAGPVVTAAVILPHNFDLIDVNDSKKLSPKKRKE 112 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ KI + A+ + + A++ ID+ NI++A A+ HAV+ L+V P + L+D ++P ++ Sbjct: 113 LFPKILAKAVSVGVGLANNDVIDRINIYEADRLAMAHAVQGLKVKPDALLVDAMNVPLNI 172 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +I GD+ S SIAAASI+AKV RD LM + YP+Y F + GY T +H + +K Sbjct: 173 P--QVKLIHGDAKSNSIAAASIVAKVFRDNLMDAYGEVYPEYDFKHNAGYGTREHMEALK 230 Query: 190 EKGPSCIHRLTFRPLRN 206 + GP+ IHR +F P+ Sbjct: 231 KYGPTPIHRRSFAPVSE 247 >gi|332289941|ref|YP_004420793.1| ribonuclease HII [Gallibacterium anatis UMN179] gi|330432837|gb|AEC17896.1| ribonuclease HII [Gallibacterium anatis UMN179] Length = 197 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 89/186 (47%), Positives = 118/186 (63%), Gaps = 1/186 (0%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 N +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S KKR+ L E+I A+ Sbjct: 8 NAKLIAGVDEVGRGPLVGAVVTAAVILDPERPITGLADSKKLSEKKRQLLAEEIKEKALA 67 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 S+ A ID+ NI +AT+ A+ AV+ L + P LIDG IP L A AV+KGD Sbjct: 68 WSLGRAEAAEIDRINILQATMLAMCRAVQGLHIQPDFVLIDGNRIPSALKIAAQAVVKGD 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+ I+AASI+AKV RD+ M + H+KYP YGFD H GYPT H + +++ G HR + Sbjct: 128 SLVAEISAASILAKVARDQEMLLLHQKYPQYGFDRHKGYPTKLHLEALEKYGILAEHRQS 187 Query: 201 FRPLRN 206 F P++ Sbjct: 188 FAPVKK 193 >gi|227879127|ref|ZP_03997011.1| ribonuclease HII [Lactobacillus crispatus JV-V01] gi|256843160|ref|ZP_05548648.1| ribonuclease HII [Lactobacillus crispatus 125-2-CHN] gi|256850241|ref|ZP_05555670.1| ribonuclease HII [Lactobacillus crispatus MV-1A-US] gi|262046367|ref|ZP_06019329.1| ribonuclease HII [Lactobacillus crispatus MV-3A-US] gi|293380236|ref|ZP_06626317.1| ribonuclease HII [Lactobacillus crispatus 214-1] gi|312977295|ref|ZP_07789043.1| ribonuclease HII [Lactobacillus crispatus CTV-05] gi|227861284|gb|EEJ68919.1| ribonuclease HII [Lactobacillus crispatus JV-V01] gi|256614580|gb|EEU19781.1| ribonuclease HII [Lactobacillus crispatus 125-2-CHN] gi|256712878|gb|EEU27870.1| ribonuclease HII [Lactobacillus crispatus MV-1A-US] gi|260573238|gb|EEX29796.1| ribonuclease HII [Lactobacillus crispatus MV-3A-US] gi|290923203|gb|EFE00125.1| ribonuclease HII [Lactobacillus crispatus 214-1] gi|310895726|gb|EFQ44792.1| ribonuclease HII [Lactobacillus crispatus CTV-05] Length = 250 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 90/198 (45%), Positives = 124/198 (62%), Gaps = 4/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E EK VAG+DEVGRG LAGPVV AA+I+D + +NDSKK+S +KR + Sbjct: 54 RFSYEKKFWEKG-QLVAGVDEVGRGPLAGPVVTAAVIIDQDFDLLDVNDSKKLSPEKRLK 112 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY KI + A+ + I S + ID+ NI++A A+ AV L V P + L+D ++P +L Sbjct: 113 LYPKILAEAVSVGIGVKSAEVIDQINIYEADRQAMAQAVRALDVKPNALLVDAMNVPVNL 172 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +IKGD+ S SIAAASI+AKV RD+LM + YP Y F + GY T +H + +K Sbjct: 173 P--QVKLIKGDAKSNSIAAASIVAKVFRDQLMDDYDRIYPQYCFHHNAGYGTKEHIEALK 230 Query: 190 EKGPSCIHRLTFRPLRNL 207 + GP+ IHR TF P+ + Sbjct: 231 KYGPTPIHRKTFAPVSDF 248 >gi|254492019|ref|ZP_05105197.1| ribonuclease HII [Methylophaga thiooxidans DMS010] gi|224462834|gb|EEF79105.1| ribonuclease HII [Methylophaga thiooxydans DMS010] Length = 190 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 90/182 (49%), Positives = 117/182 (64%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG LAGPVV AA+ILDP+N G+ DSKK+S K+RE L I A+ ++ Sbjct: 6 LVAGVDEVGRGPLAGPVVTAAVILDPDNPIEGLADSKKLSEKRREFLVPLIKEHALAWAM 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI +A+L A+ AVE L + P L+DG P DL C+ VIKGD Sbjct: 66 GRAEPEEIDQINILQASLLAMKRAVEALSITPGHVLVDGIHAP-DLNCKTTTVIKGDQKE 124 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV RDR M YP YGF H GYPT +HQ+ + + G + IHR +F P Sbjct: 125 PAIAAASILAKVARDREMHEMDLMYPGYGFAQHKGYPTKQHQKALADLGVTDIHRRSFSP 184 Query: 204 LR 205 ++ Sbjct: 185 VQ 186 >gi|170768530|ref|ZP_02902983.1| ribonuclease HII [Escherichia albertii TW07627] gi|170122634|gb|EDS91565.1| ribonuclease HII [Escherichia albertii TW07627] Length = 198 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 89/183 (48%), Positives = 112/183 (61%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LYE+I A+ S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEEIKEKALSWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L + P LIDG P+ LP + AV+KGDS Sbjct: 71 GRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPVPSMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M YP YGF H GYPTA H + + E G + HR +F P Sbjct: 130 PEISAASILAKVTRDAEMAALDTVYPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|327183486|gb|AEA31933.1| ribonuclease HII [Lactobacillus amylovorus GRL 1118] Length = 252 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 90/198 (45%), Positives = 123/198 (62%), Gaps = 4/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E KN VAG+DEVGRG LAGPVV AA+I+D + +NDSKK++ ++R Sbjct: 54 RFAYEKEFWAKN-QLVAGVDEVGRGPLAGPVVTAAVIIDHDFDLIDVNDSKKLTPERRLA 112 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY KI A+ + I S Q ID+ NI++A A+ AV L + P + ++D ++P DL Sbjct: 113 LYPKILEEAVSVGIGVKSSQVIDQINIYEADRQAMAQAVRALDIKPDALVVDAMNVPVDL 172 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +IKGD+ S SIAAASI+AKV RD+LM K YP YGF ++ GY T +H +K Sbjct: 173 P--QVKLIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFQNNAGYGTKEHIAALK 230 Query: 190 EKGPSCIHRLTFRPLRNL 207 + GP+ IHR TF P+ + Sbjct: 231 KYGPTAIHRKTFAPVSDF 248 >gi|315038209|ref|YP_004031777.1| ribonuclease HII [Lactobacillus amylovorus GRL 1112] gi|325956663|ref|YP_004292075.1| ribonuclease HII [Lactobacillus acidophilus 30SC] gi|312276342|gb|ADQ58982.1| ribonuclease HII [Lactobacillus amylovorus GRL 1112] gi|325333228|gb|ADZ07136.1| ribonuclease HII [Lactobacillus acidophilus 30SC] Length = 252 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 90/198 (45%), Positives = 123/198 (62%), Gaps = 4/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E KN VAG+DEVGRG LAGPVV AA+I+D + +NDSKK++ ++R Sbjct: 54 RFAYEKEFWAKN-QLVAGVDEVGRGPLAGPVVTAAVIIDHDFDLIDVNDSKKLTPERRLA 112 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY KI A+ + I S Q ID+ NI++A A+ AV L + P + ++D ++P DL Sbjct: 113 LYPKILEEAVSVGIGVKSSQVIDQINIYEADRQAMAQAVRALDIKPDALVVDAMNVPVDL 172 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +IKGD+ S SIAAASI+AKV RD+LM K YP YGF ++ GY T +H +K Sbjct: 173 P--QVKLIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFQNNAGYGTKEHIAALK 230 Query: 190 EKGPSCIHRLTFRPLRNL 207 + GP+ IHR TF P+ + Sbjct: 231 KYGPTAIHRKTFAPVSDF 248 >gi|288905300|ref|YP_003430522.1| ribonuclease HII [Streptococcus gallolyticus UCN34] gi|306831379|ref|ZP_07464538.1| ribonuclease HII [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978285|ref|YP_004288001.1| ribonuclease HII [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732026|emb|CBI13591.1| ribonuclease HII [Streptococcus gallolyticus UCN34] gi|304426439|gb|EFM29552.1| ribonuclease HII [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178213|emb|CBZ48257.1| rnhB [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 259 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 85/200 (42%), Positives = 121/200 (60%), Gaps = 6/200 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ +AGIDEVGRG LAGPVV A +IL N +NDSKKI EE+ Sbjct: 58 LRYEKELYQQGYQAIAGIDEVGRGPLAGPVVTACVILPKNCKIKHLNDSKKIPKNHHEEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127 Y++I + A+ I I + ID+ NI++AT + A+ L+ P LID + Sbjct: 118 YQEILARALGIGIGIVDNNVIDQINIYEATKVGMLQAINQLKGVVTKPDYLLIDAMHLET 177 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +P Q+ +IKGD+ SLSIAAASI+AKVTRDR+M YP Y F+ +VGY T +H + Sbjct: 178 SIPQQS--LIKGDANSLSIAAASIVAKVTRDRMMADYANDYPGYAFEKNVGYGTKEHLEG 235 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 +K+ G + IHR TF P++++ Sbjct: 236 LKKYGITPIHRKTFEPIKSM 255 >gi|318606916|emb|CBY28414.1| ribonuclease HII [Yersinia enterocolitica subsp. palearctica Y11] Length = 198 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 114/184 (61%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++IT A+ S+ Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVILDPKQPIVGLADSKKLSEKRRLSLYDEITDKALSWSL 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L + P LIDG P+ L + AV+KGDS Sbjct: 72 GRAEPEEIDQLNILHATMLAMQRAVAGLHIAPDYVLIDGNRCPK-LAMPSLAVVKGDSRV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M ++P+YGF H GYPTA H + G + HR +F P Sbjct: 131 AEISAASILAKVTRDREMTELDLQFPEYGFAQHKGYPTAVHLDKLTTFGATEHHRRSFGP 190 Query: 204 LRNL 207 ++ + Sbjct: 191 VKRV 194 >gi|259503396|ref|ZP_05746298.1| ribonuclease HII [Lactobacillus antri DSM 16041] gi|259168641|gb|EEW53136.1| ribonuclease HII [Lactobacillus antri DSM 16041] Length = 255 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 84/197 (42%), Positives = 116/197 (58%), Gaps = 3/197 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 R F E + + VAG+DEVGRG LAGPVV A+IL P+ G+ DSK+++ +R Sbjct: 57 RQRFHYERQLWQNGCRYVAGMDEVGRGPLAGPVVTCAVILGPDFDLIGVTDSKQLTRHER 116 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E+LY +I A+ +SI+ + ID+ NI+ AT DA+ AV NL P ++D +P Sbjct: 117 EQLYLRIVDEAVEVSIAVNDREAIDRLNIYAATQDAMMRAVRNLNHRPDHLIVDAVPLPF 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D P +IKGD S+S+AAASI+AK RD LMR + YP YGF ++GY T H Sbjct: 177 DYP--QTTLIKGDQKSISVAAASIVAKEYRDHLMRDYDRVYPGYGFAENMGYGTKAHLAG 234 Query: 188 IKEKGPSCIHRLTFRPL 204 + G IHR +F P+ Sbjct: 235 LARLGACPIHRRSFSPV 251 >gi|146308060|ref|YP_001188525.1| ribonuclease HII [Pseudomonas mendocina ymp] gi|166226640|sp|A4XWS7|RNH2_PSEMY RecName: Full=Ribonuclease HII; Short=RNase HII gi|145576261|gb|ABP85793.1| Ribonuclease H [Pseudomonas mendocina ymp] Length = 208 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 89/184 (48%), Positives = 117/184 (63%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE L+++I A+ I Sbjct: 13 LVAGVDEVGRGPLCGAVVTAAVILDPLRPIIGLNDSKKLTEARREVLFDEIREKALAWCI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI AT+ A+ AVE L V P+ ALIDG P L + V+KGDS Sbjct: 73 ARAEVEEIDRLNILHATMLAMQRAVEGLSVTPKLALIDGNRCPR-LTVPSAPVVKGDSRV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV+RDR M + YP YG H GYPT H + ++ GP+ IHR +F P Sbjct: 132 PAIAAASILAKVSRDREMLEMDRLYPGYGIAGHKGYPTPVHLEALQRLGPTPIHRRSFAP 191 Query: 204 LRNL 207 +R L Sbjct: 192 VRAL 195 >gi|291550686|emb|CBL26948.1| Ribonuclease HII [Ruminococcus torques L2-14] Length = 252 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 91/197 (46%), Positives = 120/197 (60%), Gaps = 4/197 (2%) Query: 8 ERPHFELEAMVREK--NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 ER E+ K + + GIDE GRG LAGPVV A+IL + +NDSKK+S Sbjct: 52 ERERLEVMKTFERKYADYSFICGIDEAGRGPLAGPVVAGAVILPKDCEILYLNDSKKLSA 111 Query: 66 KKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KREELY++I A+ + + AS ID+ NI +AT +A+ A+ L V P L D + Sbjct: 112 AKREELYDEIMEKAVAAAVGMASPARIDEINILQATYEAMREAISKLAVEPGILLNDAVT 171 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IPE + +IKGD+ S+SIAAASI+AKVTRDRLM K P+YGF H GY + +H Sbjct: 172 IPEMI-IPQVPIIKGDAKSVSIAAASILAKVTRDRLMVEYDKVMPEYGFAGHKGYGSKEH 230 Query: 185 QQVIKEKGPSCIHRLTF 201 + IK+ GP+ IHR TF Sbjct: 231 IEAIKKYGPTPIHRKTF 247 >gi|146310385|ref|YP_001175459.1| ribonuclease HII [Enterobacter sp. 638] gi|166991067|sp|A4W6S8|RNH2_ENT38 RecName: Full=Ribonuclease HII; Short=RNase HII gi|145317261|gb|ABP59408.1| Ribonuclease H [Enterobacter sp. 638] Length = 198 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 89/183 (48%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L+++I A+ S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALFDEIKEKALAWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L+++P LIDG P LP ++ AV+KGDS Sbjct: 71 GRAEPEEIDELNILHATMLAMQRAVAGLKIVPEYVLIDGNRCPA-LPMRSLAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASIIAKVTRD M YP YGF H GYPTA H + + E GP+ HR +F P Sbjct: 130 AEISAASIIAKVTRDAEMAALDLSYPQYGFAQHKGYPTAFHLEKLSEHGPTEHHRRSFGP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|270290222|ref|ZP_06196447.1| ribonuclease HII [Pediococcus acidilactici 7_4] gi|270281003|gb|EFA26836.1| ribonuclease HII [Pediococcus acidilactici 7_4] Length = 255 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 94/197 (47%), Positives = 125/197 (63%), Gaps = 3/197 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F LE + + VAGIDEVGRG LAGPVV AA++LD + +NDSK++S K R Sbjct: 55 QKRFSLENELWQSGKQFVAGIDEVGRGCLAGPVVTAAVVLDSHFDLVEVNDSKQLSLKLR 114 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E LY +I S A+ + I S+Q ID+ I AT A+ A+ +L V P LID +P Sbjct: 115 ESLYAQILSEAVSVGIGVRSNQQIDQMGILNATKAAMNDAISHLNVTPEHLLIDAVQVPT 174 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +P + KGD+ S+SIAAASI+AKV RD LMR +K YP YGFD +VGY T +H + Sbjct: 175 SIPKTV--MYKGDAKSISIAAASIVAKVYRDHLMRSYNKIYPGYGFDQNVGYGTKQHLEG 232 Query: 188 IKEKGPSCIHRLTFRPL 204 +KE G + +HRLTF P+ Sbjct: 233 LKELGITPLHRLTFEPV 249 >gi|116514255|ref|YP_813161.1| ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275013|sp|Q049Z9|RNH2_LACDB RecName: Full=Ribonuclease HII; Short=RNase HII gi|116093570|gb|ABJ58723.1| RNase HII [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 256 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 89/198 (44%), Positives = 119/198 (60%), Gaps = 4/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E K V G+DEVGRG LAGPVV AA+IL + +NDSKK+S +KR Sbjct: 55 RFSYEKDFWAKG-QLVGGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLA 113 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY KI A+ + + ++ ID+ NI++A A+ AVE L P L+D ++P DL Sbjct: 114 LYPKILQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSTRPDVLLVDAMNVPVDL 173 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +IKGD+ S SIAAASI+AKV RD LM + YPDY FD + GY T H + ++ Sbjct: 174 P--QLELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALR 231 Query: 190 EKGPSCIHRLTFRPLRNL 207 + GP+ IHRLTF P+ + Sbjct: 232 KYGPTPIHRLTFSPVSEM 249 >gi|330504230|ref|YP_004381099.1| ribonuclease HII [Pseudomonas mendocina NK-01] gi|328918516|gb|AEB59347.1| ribonuclease HII [Pseudomonas mendocina NK-01] Length = 208 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 90/184 (48%), Positives = 118/184 (64%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE L+++I A+ I Sbjct: 13 LVAGVDEVGRGPLCGAVVTAAVILDPARPIIGLNDSKKLTEARRELLFDEIREKALAWCI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI AT+ A+ AVE L V PR ALIDG P+ L + V+KGDS Sbjct: 73 ARAEVEEIDRLNILHATMLAMQRAVEGLSVTPRLALIDGNRCPK-LAVPSAPVVKGDSRV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV+RDR M + YP YG H GYPT H + ++ GP+ IHR +F P Sbjct: 132 PAIAAASILAKVSRDREMVEMDRLYPGYGIAGHKGYPTPVHLEALQRLGPTPIHRRSFAP 191 Query: 204 LRNL 207 +R L Sbjct: 192 VRAL 195 >gi|332976611|gb|EGK13452.1| ribonuclease HII [Desmospora sp. 8437] Length = 264 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 88/196 (44%), Positives = 120/196 (61%), Gaps = 2/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + LE R + +AG+DE GRG LAGPVV AA+IL G+NDSKK+S ++RE L Sbjct: 61 WRLEREYRRQGYQAIAGVDEAGRGPLAGPVVAAAVILPLGFDATGLNDSKKLSPEERESL 120 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +I A+ + I A H+YID+HNI +AT +A+ AV +L L+D +PE L Sbjct: 121 RVRIERDAVAVGIGVADHRYIDEHNILQATYEAMRRAVADLSPAADCLLLDAVEVPE-LF 179 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++KGD++S SIAAAS+IAK RDR M A KKYP YGF+ ++GY T H ++ Sbjct: 180 LPQHPIVKGDALSHSIAAASVIAKTFRDRCMTAAGKKYPQYGFEKNMGYGTPDHLAALER 239 Query: 191 KGPSCIHRLTFRPLRN 206 G IHR +F P+R Sbjct: 240 WGTCPIHRKSFAPVRE 255 >gi|76788741|ref|YP_327827.1| ribonuclease HII [Chlamydia trachomatis A/HAR-13] gi|237804378|ref|YP_002888532.1| ribonuclease HII [Chlamydia trachomatis B/TZ1A828/OT] gi|97182374|sp|Q3KMZ3|RNH2_CHLTA RecName: Full=Ribonuclease HII; Short=RNase HII gi|76167271|gb|AAX50279.1| ribonuclease HII [Chlamydia trachomatis A/HAR-13] gi|231272678|emb|CAX09581.1| ribonuclease HII [Chlamydia trachomatis B/TZ1A828/OT] Length = 217 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 88/195 (45%), Positives = 117/195 (60%), Gaps = 4/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E E+ VAG+DE GRG LAGPVV A IL + GI+DSKK++ K+R LYE Sbjct: 17 FENQAIEQGYSRVAGVDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQRRYLYE 76 Query: 74 KITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + S + ID+ NI +AT +A+ A+ +LQ P L+DG +P +P Sbjct: 77 LLLEDPEVDCGVGVVSVERIDEINILEATKEAMVQAIASLQSTPDFLLVDGLFLPHKVP- 135 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGD+ S+SIAAASIIAK RD LMR H +YP+YGFD H GY TA H Q +K Sbjct: 136 -SLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHLQALKHF 194 Query: 192 GPSCIHRLTFRPLRN 206 GP HR +F P++ Sbjct: 195 GPCVYHRKSFSPVKE 209 >gi|166154250|ref|YP_001654368.1| ribonuclease HII [Chlamydia trachomatis 434/Bu] gi|166155125|ref|YP_001653380.1| ribonuclease HII [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335499|ref|ZP_07223743.1| ribonuclease HII [Chlamydia trachomatis L2tet1] gi|238687401|sp|B0B9D6|RNH2_CHLT2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|238687453|sp|B0BB15|RNH2_CHLTB RecName: Full=Ribonuclease HII; Short=RNase HII gi|165930238|emb|CAP03723.1| ribonuclease HII [Chlamydia trachomatis 434/Bu] gi|165931113|emb|CAP06677.1| ribonuclease HII [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 217 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 87/195 (44%), Positives = 117/195 (60%), Gaps = 4/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E E+ VAG+DE GRG LAGPVV A IL + GI+DSKK++ K+R LYE Sbjct: 17 FENQAIEQGYSQVAGVDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQRRYLYE 76 Query: 74 KITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + S + ID+ NI +AT +A+ A+ +L+ P L+DG +P +P Sbjct: 77 LLLEDPEVDCGVGVISVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLFLPHKIP- 135 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGD+ S+SIAAASIIAK RD LMR H +YP+YGFD H GY TA H Q +K Sbjct: 136 -SLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHLQALKHF 194 Query: 192 GPSCIHRLTFRPLRN 206 GP HR +F P++ Sbjct: 195 GPCVYHRKSFSPVKE 209 >gi|66044605|ref|YP_234446.1| ribonuclease HII [Pseudomonas syringae pv. syringae B728a] gi|75502991|sp|Q4ZWR4|RNH2_PSEU2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|63255312|gb|AAY36408.1| Ribonuclease H [Pseudomonas syringae pv. syringae B728a] gi|330968946|gb|EGH69012.1| ribonuclease HII [Pseudomonas syringae pv. aceris str. M302273PT] Length = 218 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 89/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+LY +I A+ I Sbjct: 14 LVAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKLYVEIQEKALCWFI 73 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI AT+ A+ AVE L + PR ALIDG P+ L + V+KGDS Sbjct: 74 ARAEVEEIDQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQ-LSVPSAPVVKGDSKV 132 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P Sbjct: 133 PAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 192 Query: 204 LR 205 +R Sbjct: 193 VR 194 >gi|291519510|emb|CBK74731.1| Ribonuclease HII [Butyrivibrio fibrisolvens 16/4] Length = 254 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 89/190 (46%), Positives = 122/190 (64%), Gaps = 3/190 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E E+ + GIDEVGRG LAGPVV A +IL + INDSKK++ KREELY Sbjct: 62 EYEYKYWEQ-YDYIGGIDEVGRGPLAGPVVTACVILPKDCDILYINDSKKLTAAKREELY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E+I AI +SI +AS + ID NI +AT +A+ A+E +V P+ L D +IP+ + Sbjct: 121 EEIMEKAISVSIGAASEERIDDINILQATYEAMRQAIEECKVEPQLLLNDAVTIPQ-VKI 179 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S+SI AASIIAKVTRDR+M +P+Y F ++ GY +A+H + +K+ Sbjct: 180 PQVPIIKGDAKSISIGAASIIAKVTRDRMMVEYDSIFPEYHFANNKGYGSAEHIEALKKY 239 Query: 192 GPSCIHRLTF 201 GP IHR +F Sbjct: 240 GPCPIHRRSF 249 >gi|255506601|ref|ZP_05382240.1| ribonuclease HII [Chlamydia trachomatis D(s)2923] gi|289525074|emb|CBJ14544.1| ribonuclease HII [Chlamydia trachomatis Sweden2] gi|296434614|gb|ADH16792.1| ribonuclease HII [Chlamydia trachomatis E/150] gi|296438332|gb|ADH20485.1| ribonuclease HII [Chlamydia trachomatis E/11023] Length = 217 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 88/195 (45%), Positives = 117/195 (60%), Gaps = 4/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E E+ VAGIDE GRG LAGPVV A IL + GI+DSKK++ K+R LYE Sbjct: 17 FENQAIEQGYSQVAGIDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQRRYLYE 76 Query: 74 KITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + S + ID+ NI +AT +A+ A+ +L+ P L+DG +P +P Sbjct: 77 LLLEDPEVDCGVGVVSVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLFLPHKIP- 135 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGD+ S+SIAAASIIAK RD LMR H +YP+YGFD H GY TA H Q +K Sbjct: 136 -SLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHLQALKHF 194 Query: 192 GPSCIHRLTFRPLRN 206 GP HR +F P++ Sbjct: 195 GPCVYHRKSFSPVKE 209 >gi|290580555|ref|YP_003484947.1| putative ribonuclease HII [Streptococcus mutans NN2025] gi|254997454|dbj|BAH88055.1| putative ribonuclease HII [Streptococcus mutans NN2025] Length = 260 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 87/200 (43%), Positives = 124/200 (62%), Gaps = 6/200 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV A +IL N +NDSKKI KK EE+ Sbjct: 58 LRYEKDLYLQGYQAIAGIDEVGRGPLAGPVVAACVILPKNCKIRHLNDSKKIPKKKHEEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127 Y+++ A+ I I S + ID+ NI++AT A+ A+++LQ P LID ++ Sbjct: 118 YKQVVKVALAIGIGRISSEMIDQVNIYEATKMAMLQAIDDLQGLVSRPDYLLIDAMNL-- 175 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + ++IKGD+ SLSIAAASI+AKVTRDR+M + YP YGF +VGY T +H + Sbjct: 176 GISIPQSSIIKGDAHSLSIAAASIVAKVTRDRMMIGYDEIYPGYGFAQNVGYGTKQHLEG 235 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 ++ G + IHR TF P++++ Sbjct: 236 LETLGVTPIHRRTFEPIKSM 255 >gi|330975385|gb|EGH75451.1| ribonuclease HII [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 217 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 90/182 (49%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ KRE+LY +I A+ I Sbjct: 13 LVAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEAKREKLYVEIQEKALCWFI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI AT+ A+ AVE L + PR ALIDG P+ L + V+KGDS Sbjct: 73 ARAEVEEIDQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQ-LSVPSAPVVKGDSKV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P Sbjct: 132 PAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 191 Query: 204 LR 205 +R Sbjct: 192 VR 193 >gi|154251159|ref|YP_001411983.1| ribonuclease H [Parvibaculum lavamentivorans DS-1] gi|189043635|sp|A7HQZ3|RNH2_PARL1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|154155109|gb|ABS62326.1| Ribonuclease H [Parvibaculum lavamentivorans DS-1] Length = 269 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 90/202 (44%), Positives = 121/202 (59%), Gaps = 1/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 +P P F E V G+DE GRG LAGPVV AA+I+D P G+NDSKK+ Sbjct: 44 LPLLPDFRFEIE-EGAPARLVCGVDEAGRGPLAGPVVAAAVIIDLTRCPEGLNDSKKLDA 102 Query: 66 KKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R +L ++ A I + AS + ID+ NI AT+ A+ AV +L P ALIDG Sbjct: 103 ARRADLLAELADCAEIGVGIASVEEIDEINILHATMLAMTRAVASLPRAPHIALIDGNRC 162 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P L C + AVI GD+++ SIAAASI+AKVTRDR+M + +P YGF+ H+GY T +H Sbjct: 163 PPSLACASRAVIGGDALARSIAAASIVAKVTRDRMMAALAETHPGYGFEKHMGYSTPEHF 222 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 + GP IHR +F P+R + Sbjct: 223 DALSRLGPCAIHRRSFAPVRKM 244 >gi|149907539|ref|ZP_01896286.1| ribonuclease HII [Moritella sp. PE36] gi|149809209|gb|EDM69138.1| ribonuclease HII [Moritella sp. PE36] Length = 199 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 87/183 (47%), Positives = 115/183 (62%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR+ L+ +I A+ SI Sbjct: 12 LVAGVDEVGRGPLVGDVVTAAVILDPNNPIVGLTDSKKLSDKKRQLLFPEIKEKALAWSI 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 S ID+ NI +AT+ A+ AV L + P IDG P LP A A++KGD Sbjct: 72 GRCSPSEIDELNILQATMVAMQRAVAGLTLQPEHVFIDGNRCPA-LPMPAEAIVKGDLRV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RD M H++YP+YGF H GYPT H + + E GP+ +R +F+P Sbjct: 131 AEISAASILAKVVRDAEMDELHERYPEYGFAQHKGYPTKAHMEKLAELGPTEEYRKSFKP 190 Query: 204 LRN 206 ++ Sbjct: 191 VQR 193 >gi|217977760|ref|YP_002361907.1| Ribonuclease H [Methylocella silvestris BL2] gi|217503136|gb|ACK50545.1| Ribonuclease H [Methylocella silvestris BL2] Length = 208 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 103/206 (50%), Positives = 136/206 (66%), Gaps = 1/206 (0%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 M I +RP F LE + +++WPVAG+DE GRG LAGPV AA+ILDP+N+P G+NDS Sbjct: 1 MAEKPILDRPDFRLERKLLRRDVWPVAGVDEAGRGPLAGPVAAAAVILDPDNLPRGLNDS 60 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 K+++ ++RE+LYE I A+ +++ +S + ID NI +AT A+ A+ L PR L Sbjct: 61 KQLTREEREKLYESIMKRALAVAVGFSSVKEIDAVNIRQATFRAMRRALAALAASPRYVL 120 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 IDG + DL C+ ++KGD+ LSIAAASI+AKVTRDRLM +P YGF HVGY Sbjct: 121 IDGNDLAPDLCCEGETIVKGDASILSIAAASIVAKVTRDRLMSRLCAVHPVYGFSQHVGY 180 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLR 205 T H Q I+ GP HRLTFRP R Sbjct: 181 GTPAHLQAIEAHGPCPFHRLTFRPFR 206 >gi|20807898|ref|NP_623069.1| ribonuclease HII [Thermoanaerobacter tengcongensis MB4] gi|39932431|sp|Q8R9X9|RNH2_THETN RecName: Full=Ribonuclease HII; Short=RNase HII gi|20516465|gb|AAM24673.1| Ribonuclease HII [Thermoanaerobacter tengcongensis MB4] Length = 241 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 85/189 (44%), Positives = 114/189 (60%), Gaps = 2/189 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + E+ + +AG+DE GRG L GPVV A +IL INDSKK+ +KRE+L E Sbjct: 47 YEKKLYEEGLNFIAGVDEAGRGPLVGPVVAACVILPKEIFIPEINDSKKLPEEKREKLAE 106 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI I + ID+ NI ATL A+ A+ ++ L+D SIP D+P + Sbjct: 107 VIKKEAISYGIGIVDCREIDEINILNATLKAMKKAIFEVKEKIEYLLVDAISIP-DMPIK 165 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++KGDS S+SIAAASI+AKV RDR+MR HK YP Y F + GY T +H + +K+ G Sbjct: 166 QLPIVKGDSKSISIAAASILAKVERDRIMREYHKLYPQYNFAKNKGYGTKEHIEALKKYG 225 Query: 193 PSCIHRLTF 201 P IHR T+ Sbjct: 226 PCPIHRRTY 234 >gi|225028010|ref|ZP_03717202.1| hypothetical protein EUBHAL_02279 [Eubacterium hallii DSM 3353] gi|224954724|gb|EEG35933.1| hypothetical protein EUBHAL_02279 [Eubacterium hallii DSM 3353] Length = 251 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 84/196 (42%), Positives = 117/196 (59%), Gaps = 6/196 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + + GIDEVGRG LAGPVV A++L + INDSKK+S KKREEL+ Sbjct: 60 QYEKEYSQ--YDFICGIDEVGRGPLAGPVVAGAVVLPKGSRILYINDSKKLSAKKREELF 117 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I A+ + I AS + ID+ NI +AT +A+ A+ NL V P L D IP + Sbjct: 118 DIIKEEAVSVGIGMASPERIDEINILQATYEAMRQAIANLSVKPELLLNDAVMIP-GVDI 176 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGD+ S+SI AASI+AKV RD +M K +P Y F S+ GY + +H + + Sbjct: 177 KQVPIIKGDAKSISIGAASIMAKVYRDHMMEEYDKVFPGYDFASNKGYGSKEHIEALHRL 236 Query: 192 GPSCIHRLTFRPLRNL 207 GP IHR +F L+N+ Sbjct: 237 GPCPIHRCSF--LKNI 250 >gi|329296122|ref|ZP_08253458.1| ribonuclease H [Plautia stali symbiont] Length = 208 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 86/184 (46%), Positives = 113/184 (61%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R L+++I A+ S Sbjct: 10 RLIAGVDEVGRGPLVGAVVTAAVILDPARPIAGLADSKKLSEKRRLALFDEIKEKALAWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI AT+ A+ AV L + P LIDG P LP + AV+KGDS+ Sbjct: 70 LGRAEPEEIDQLNILHATMLAMQRAVAGLHIAPDFILIDGNRCPA-LPMPSQAVVKGDSL 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASIIAKVT DR M +P YGF H GYPTA H + + + G + HR +F Sbjct: 129 VREISAASIIAKVTCDREMAELDLLFPQYGFAQHKGYPTALHMEKLTQFGATPHHRRSFA 188 Query: 203 PLRN 206 P+RN Sbjct: 189 PVRN 192 >gi|152979547|ref|YP_001345176.1| ribonuclease HII [Actinobacillus succinogenes 130Z] gi|171704350|sp|A6VQJ4|RNH2_ACTSZ RecName: Full=Ribonuclease HII; Short=RNase HII gi|150841270|gb|ABR75241.1| Ribonuclease H [Actinobacillus succinogenes 130Z] Length = 202 Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 84/187 (44%), Positives = 114/187 (60%), Gaps = 2/187 (1%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L +I A+ Sbjct: 8 QGYGLIAGVDEVGRGPLVGAVVTAAVILDPNNPISGLADSKKLSEKKRLVLAAEIKEKAL 67 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 S+ A + ID+ NI AT+ A+ AV++L+++P L+DG +PE L A A+IKG Sbjct: 68 AWSLGRAEAEEIDELNILHATMLAMRRAVKSLKILPHLVLVDGNRVPE-LDMPAQAIIKG 126 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D I+AASI+AKV RD+ M K++P Y F H GYPT H + + G HR Sbjct: 127 DGKVAEISAASILAKVARDQEMETLDKQFPQYEFAKHKGYPTKVHLEKLMRFGALPQHRR 186 Query: 200 TFRPLRN 206 +F P+R Sbjct: 187 SFAPVRK 193 >gi|167855723|ref|ZP_02478479.1| ribonuclease HII [Haemophilus parasuis 29755] gi|167853179|gb|EDS24437.1| ribonuclease HII [Haemophilus parasuis 29755] Length = 195 Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 85/181 (46%), Positives = 113/181 (62%), Gaps = 2/181 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV A+ILDPN G+ DSKK+S K+R L E+I + A+ S+ Sbjct: 9 FIAGVDEVGRGPLVGAVVTVAVILDPNQPIEGLADSKKLSEKRRLALAEEIKAKALCWSL 68 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L++ P L+DG IP LP A AV+KGDS Sbjct: 69 GRAEPDEIDQLNILHATMLAMQRAVAGLRIQPDFVLVDGNRIPT-LPMPAQAVVKGDSFV 127 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RD+ M K+YP+YGF H GYPT H + ++ G + HR +F P Sbjct: 128 AEISAASILAKVARDQEMDELDKQYPEYGFAQHKGYPTKLHFEKLESLGVTPYHRKSFAP 187 Query: 204 L 204 + Sbjct: 188 V 188 >gi|304384964|ref|ZP_07367310.1| ribonuclease HII [Pediococcus acidilactici DSM 20284] gi|304329158|gb|EFL96378.1| ribonuclease HII [Pediococcus acidilactici DSM 20284] Length = 255 Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 94/197 (47%), Positives = 125/197 (63%), Gaps = 3/197 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F LE + + VAGIDEVGRG LAGPVV AA++LD + +NDSK++S K R Sbjct: 55 QKRFSLENELWQSGKQFVAGIDEVGRGCLAGPVVTAAVVLDDHFDLVEVNDSKQLSLKLR 114 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E LY +I S A+ + I S+Q ID+ I AT A+ A+ +L V P LID +P Sbjct: 115 ESLYAQILSEAVSVGIGVRSNQQIDQMGILNATKAAMNDAISHLNVTPEHLLIDAVQVPT 174 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +P + KGD+ S+SIAAASI+AKV RD LMR +K YP YGFD +VGY T +H + Sbjct: 175 SIPKTV--MYKGDAKSISIAAASIVAKVYRDHLMRSYNKVYPGYGFDQNVGYGTKQHLEG 232 Query: 188 IKEKGPSCIHRLTFRPL 204 +KE G + +HRLTF P+ Sbjct: 233 LKELGVTPLHRLTFEPV 249 >gi|226945927|ref|YP_002801000.1| ribonuclease HII [Azotobacter vinelandii DJ] gi|259494062|sp|C1DST2|RNH2_AZOVD RecName: Full=Ribonuclease HII; Short=RNase HII gi|226720854|gb|ACO80025.1| Ribonuclease HII [Azotobacter vinelandii DJ] Length = 207 Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 93/184 (50%), Positives = 115/184 (62%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S +RE L E+I A+ I Sbjct: 13 LVAGVDEVGRGPLCGAVVTAAVILDPERPILGLNDSKKLSEARREALSEEIREKALAWCI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI AT+ A+ AVE L V PR ALIDG P+ L VIKGD+ Sbjct: 73 ARAEVEEIDRLNILHATMLAMRRAVEGLAVTPRLALIDGNRCPK-LAVPCAPVIKGDAQV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV RDR M + YP YG H GYPTA H + + GP+ IHR +F P Sbjct: 132 PAIAAASILAKVARDREMLVLDALYPGYGLARHKGYPTAVHLEALARLGPTPIHRRSFAP 191 Query: 204 LRNL 207 +R L Sbjct: 192 VREL 195 >gi|307129834|ref|YP_003881850.1| ribonuclease HII [Dickeya dadantii 3937] gi|306527363|gb|ADM97293.1| ribonuclease HII [Dickeya dadantii 3937] Length = 198 Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 85/183 (46%), Positives = 114/183 (62%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDPN G+ DSK +S K+R LY++I A+ S+ Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVILDPNRPIAGLADSKTLSEKRRLALYDEIREKALAWSL 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID NI AT+ A+ AV L + P LIDG P LP + AV+KGDS Sbjct: 72 GRAEPEEIDSLNILHATMLAMQRAVAGLPITPDFVLIDGNRCP-SLPMPSQAVVKGDSRV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M + +++P+YGF H GYPTA H + + G + HR +F P Sbjct: 131 AEISAASILAKVTRDREMEVLDQQFPEYGFAQHKGYPTAYHLEKLATLGATLHHRRSFAP 190 Query: 204 LRN 206 ++ Sbjct: 191 VKR 193 >gi|330896074|gb|EGH28295.1| ribonuclease HII [Pseudomonas syringae pv. japonica str. M301072PT] gi|330936802|gb|EGH40959.1| ribonuclease HII [Pseudomonas syringae pv. pisi str. 1704B] Length = 218 Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 89/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+LY +I A+ I Sbjct: 14 LVAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKLYVEIQEKALCWFI 73 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI AT+ A+ AVE L + PR ALIDG P+ L + V+KGDS Sbjct: 74 ARAEVEEIDQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQ-LSVPSAPVVKGDSKV 132 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P Sbjct: 133 PAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 192 Query: 204 LR 205 +R Sbjct: 193 VR 194 >gi|227889894|ref|ZP_04007699.1| ribonuclease HII [Lactobacillus johnsonii ATCC 33200] gi|227849338|gb|EEJ59424.1| ribonuclease HII [Lactobacillus johnsonii ATCC 33200] Length = 250 Score = 260 bits (665), Expect = 8e-68, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 127/199 (63%), Gaps = 4/199 (2%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F E +K+ VAG+DEVGRG LAGPVV AA+IL + +NDSKK+S KKR Sbjct: 52 QSRFSYEKEFWQKD-RLVAGVDEVGRGPLAGPVVTAAVILPHDFDLIDVNDSKKLSPKKR 110 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + L+ KI A+ +S+ A++ ID+ NI++A A+ HAV+ L+V P + L+D ++P Sbjct: 111 QALFPKILEKAVSVSVGLANNDVIDQINIYEADRVAMAHAVQGLKVKPDALLVDAMNVPL 170 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 ++P +I GD+ S SIAAASI+AKV RD LM + YP+Y F + GY T +H + Sbjct: 171 NIP--QVKLIHGDAKSNSIAAASIVAKVFRDNLMDAYGELYPEYDFKHNAGYGTREHMEA 228 Query: 188 IKEKGPSCIHRLTFRPLRN 206 +K+ GP+ IHR +F P+ Sbjct: 229 LKKYGPTPIHRRSFAPVSE 247 >gi|222528967|ref|YP_002572849.1| ribonuclease HII [Caldicellulosiruptor bescii DSM 6725] gi|254807963|sp|B9MQX2|RNH2_ANATD RecName: Full=Ribonuclease HII; Short=RNase HII gi|222455814|gb|ACM60076.1| Ribonuclease H [Caldicellulosiruptor bescii DSM 6725] Length = 206 Score = 260 bits (665), Expect = 8e-68, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 128/197 (64%), Gaps = 4/197 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE+E + + + G+DE GRG LAGPV AA+++D I G+ DSKK++ KKRE+L Sbjct: 10 FEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREKL 69 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +E+I +I S++ + ID+ NI+ AT A+ +A+ENL++ P L+DG IP +L Sbjct: 70 FEEIIKESIAYSVAMVDSKVIDEININNATFLAMKNAIENLKIEPDIVLVDGYKIP-NLG 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD S SIA ASI+AKV+RDR + KYP Y F+ H GY T +H +++++ Sbjct: 129 FNQRAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPLYKFEKHKGYGTKEHIEILQK 188 Query: 191 KGPSCIHRLTFRPLRNL 207 GP IHR++F L+N+ Sbjct: 189 YGPCEIHRISF--LKNI 203 >gi|322831602|ref|YP_004211629.1| Ribonuclease H [Rahnella sp. Y9602] gi|321166803|gb|ADW72502.1| Ribonuclease H [Rahnella sp. Y9602] Length = 198 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 85/183 (46%), Positives = 113/183 (61%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK+S K+RE LY +I A+ S+ Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVILDPANPIAGLADSKKLSEKRREALYIEIKEKALAWSL 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L + P LIDG P+ LP + A++KGDS Sbjct: 72 GRAEPHEIDELNILHATMLAMQRAVAGLCITPDMVLIDGNRCPK-LPMASQAIVKGDSKV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M ++P+YGF H GYPT H + + G + HR +F P Sbjct: 131 AEISAASILAKVTRDREMVELDLQFPEYGFAKHKGYPTPVHLESLARLGATTHHRRSFSP 190 Query: 204 LRN 206 ++ Sbjct: 191 VKR 193 >gi|50119985|ref|YP_049152.1| ribonuclease HII [Pectobacterium atrosepticum SCRI1043] gi|73917607|sp|Q6D8C9|RNH2_ERWCT RecName: Full=Ribonuclease HII; Short=RNase HII gi|49610511|emb|CAG73956.1| ribonuclease HII [Pectobacterium atrosepticum SCRI1043] Length = 198 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 86/184 (46%), Positives = 116/184 (63%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP G+ DSK++S K+R LY++I A+ S+ Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVILDPTRPIVGLADSKQLSEKRRLSLYDEIKEKALAWSL 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L ++P LIDG P LP A AV+KGDS Sbjct: 72 GRAEPEEIDQLNILHATMLAMQRAVAALAIVPDFVLIDGNRCPA-LPMPAQAVVKGDSRV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M +++PDYGF H GYPTA H + + G + HR +F P Sbjct: 131 AEISAASIMAKVTRDREMVELDQRFPDYGFAQHKGYPTAFHLEKLAALGATEFHRRSFAP 190 Query: 204 LRNL 207 ++ + Sbjct: 191 VKRV 194 >gi|283798046|ref|ZP_06347199.1| ribonuclease HII [Clostridium sp. M62/1] gi|291074350|gb|EFE11714.1| ribonuclease HII [Clostridium sp. M62/1] gi|295091815|emb|CBK77922.1| Ribonuclease HII [Clostridium cf. saccharolyticum K10] Length = 223 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 84/190 (44%), Positives = 109/190 (57%), Gaps = 3/190 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + GIDE GRG LAGPVV AA IL + +NDSKK++ K+REEL+ Sbjct: 21 EYERKYASCGF--ICGIDEAGRGPLAGPVVAAACILPTDCEILYLNDSKKLTEKRREELF 78 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ + S ID+ NI +AT +A+ AVE L V P L D IP Sbjct: 79 VEIQEKAVSFGVGIVSPAVIDEINILQATYEAMRQAVEKLSVRPDVFLNDAVVIPGIDES 138 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGD+ S+SIAAASI+AKVTRD +M + YP+YGF H GY T H ++E Sbjct: 139 RQVKIIKGDAKSVSIAAASILAKVTRDHMMEEYDRLYPEYGFAKHKGYGTKAHLDAVREH 198 Query: 192 GPSCIHRLTF 201 G IHR +F Sbjct: 199 GMCPIHRRSF 208 >gi|330950666|gb|EGH50926.1| ribonuclease HII [Pseudomonas syringae Cit 7] Length = 218 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 89/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+LY +I A+ I Sbjct: 14 LVAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKLYVEIQEKALCWFI 73 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI AT+ A+ AVE L + PR ALIDG P+ L + V+KGDS Sbjct: 74 ARAEVEEIDQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQ-LSVPSAPVVKGDSKV 132 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P Sbjct: 133 PAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 192 Query: 204 LR 205 +R Sbjct: 193 VR 194 >gi|251793243|ref|YP_003007971.1| ribonuclease HII [Aggregatibacter aphrophilus NJ8700] gi|247534638|gb|ACS97884.1| ribonuclease HII [Aggregatibacter aphrophilus NJ8700] Length = 195 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 84/187 (44%), Positives = 116/187 (62%), Gaps = 1/187 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L E I A+ Sbjct: 8 QGYELIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRALLAEDIKQKAL 67 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ A ID+ NI A++ A+ A+++L++ P L+DG IP +L A AV+KG Sbjct: 68 AWALGRAEPHEIDELNILHASMLAMERAIKHLKIQPHFVLVDGNRIPPNLGMPAQAVVKG 127 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D++ I+AASI+AKV RD+ M KKYP Y F H GYPT H + + E G +R Sbjct: 128 DALVAEISAASILAKVARDQEMMELDKKYPQYAFAKHKGYPTKLHLEKLAEFGVLPEYRR 187 Query: 200 TFRPLRN 206 +F P++N Sbjct: 188 SFAPIKN 194 >gi|24379434|ref|NP_721389.1| ribonuclease HII [Streptococcus mutans UA159] gi|39932397|sp|Q8DUE1|RNH2_STRMU RecName: Full=Ribonuclease HII; Short=RNase HII gi|24377368|gb|AAN58695.1|AE014939_2 putative ribonuclease HII [Streptococcus mutans UA159] Length = 260 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 87/200 (43%), Positives = 124/200 (62%), Gaps = 6/200 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV A +IL N +NDSKKI KK EE+ Sbjct: 58 LRYEKDLYLQGYQAIAGIDEVGRGPLAGPVVAACVILPKNCKIRHLNDSKKIPKKKHEEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127 Y+++ A+ I I S + ID+ NI++AT A+ A+++LQ P LID ++ Sbjct: 118 YKQVVKVALAIGIGRISSEMIDQVNIYEATKMAMLQAIDDLQGLVSRPDYLLIDAMNL-- 175 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + ++IKGD+ SLSIAAASI+AKVTRDR+M + YP YGF +VGY T +H + Sbjct: 176 GISIPQSSIIKGDAHSLSIAAASIVAKVTRDRMMIGYDEIYPGYGFAQNVGYGTKQHLEG 235 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 ++ G + IHR TF P++++ Sbjct: 236 LETLGVTPIHRRTFEPIKSM 255 >gi|227903862|ref|ZP_04021667.1| ribonuclease HII [Lactobacillus acidophilus ATCC 4796] gi|227868253|gb|EEJ75674.1| ribonuclease HII [Lactobacillus acidophilus ATCC 4796] Length = 252 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 90/198 (45%), Positives = 124/198 (62%), Gaps = 4/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E +K VAG+DEVGRG LAGPVV AA+I+D + +NDSKK+S +KR + Sbjct: 56 RFLYEKQFWQKG-QLVAGVDEVGRGPLAGPVVTAAVIIDQDFDLLDVNDSKKLSPEKRLK 114 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY KI A+ +++ + Q ID+ NI++A A+ AV L + P + L+D ++P DL Sbjct: 115 LYPKILEEAVSVAVGVKNAQVIDQINIYEADRQAMAQAVNALDIKPDALLVDAMNVPVDL 174 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +IKGD+ S SIAAASI+AKV RD+LM K YP YGF + GY T +H +K Sbjct: 175 P--QIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPHYGFSRNAGYGTKEHIDALK 232 Query: 190 EKGPSCIHRLTFRPLRNL 207 + GP+ IHR TF P+ + Sbjct: 233 QYGPTHIHRKTFAPVSDF 250 >gi|256851135|ref|ZP_05556524.1| ribonuclease HII [Lactobacillus jensenii 27-2-CHN] gi|260660559|ref|ZP_05861474.1| ribonuclease HII [Lactobacillus jensenii 115-3-CHN] gi|282934516|ref|ZP_06339770.1| ribonuclease HII [Lactobacillus jensenii 208-1] gi|297206001|ref|ZP_06923396.1| ribonuclease H [Lactobacillus jensenii JV-V16] gi|256616197|gb|EEU21385.1| ribonuclease HII [Lactobacillus jensenii 27-2-CHN] gi|260548281|gb|EEX24256.1| ribonuclease HII [Lactobacillus jensenii 115-3-CHN] gi|281301409|gb|EFA93699.1| ribonuclease HII [Lactobacillus jensenii 208-1] gi|297149127|gb|EFH29425.1| ribonuclease H [Lactobacillus jensenii JV-V16] Length = 252 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 93/197 (47%), Positives = 121/197 (61%), Gaps = 4/197 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F+ E + VAG+DEVGRG LAGPVV AA+ILD + +NDSKK+S KKR E Sbjct: 54 RFQYEQKAWKAG-SIVAGVDEVGRGPLAGPVVTAAVILDDSFDLVEVNDSKKLSPKKRLE 112 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY +I A+ + I S + ID+ NI++A A+ AV NL + P L+D ++P D+ Sbjct: 113 LYPQILDKAVAVGIGVGSPELIDRINIYEADRVAMAQAVNNLAIKPDLLLVDAMNVPVDI 172 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + +IKGDS S SIAAASIIAKV RD LM K YP Y F+ + GY TAKH +K Sbjct: 173 --KQIELIKGDSKSNSIAAASIIAKVFRDELMNDYAKVYPQYDFEHNAGYGTAKHIAALK 230 Query: 190 EKGPSCIHRLTFRPLRN 206 E G + IHR +F P+ Sbjct: 231 EFGATPIHRRSFSPVSE 247 >gi|317129225|ref|YP_004095507.1| ribonuclease H [Bacillus cellulosilyticus DSM 2522] gi|315474173|gb|ADU30776.1| Ribonuclease H [Bacillus cellulosilyticus DSM 2522] Length = 260 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 79/194 (40%), Positives = 118/194 (60%), Gaps = 3/194 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + ++ + G+DEVGRG LAGPVV + +IL P G+ DSK++S +KREE Y Sbjct: 64 YEEDLWKEGYHYIGGVDEVGRGPLAGPVVASCVILSPEFYLAGLTDSKQLSKQKREEFYC 123 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI + I A+ + ID+ NI++AT A+ A+ L + P L+D +P LP Sbjct: 124 NIMEEAISVGIGIATSEEIDQINIYEATKLAMKRAIHKLSIEPSYLLLDAMKLPIGLP-- 181 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SIAA+S+IAKVTRD M + YP+Y F ++GY T +H I++ G Sbjct: 182 QMSLIKGDTKSVSIAASSVIAKVTRDNYMEEIAQTYPEYRFQKNMGYGTKEHLHAIEQHG 241 Query: 193 PSCIHRLTFRPLRN 206 + HR +F P++ Sbjct: 242 ITKEHRRSFAPVKE 255 >gi|159042579|ref|YP_001531373.1| ribonuclease HII [Dinoroseobacter shibae DFL 12] gi|189043594|sp|A8LJU6|RNH2_DINSH RecName: Full=Ribonuclease HII; Short=RNase HII gi|157910339|gb|ABV91772.1| ribonuclease HII [Dinoroseobacter shibae DFL 12] Length = 206 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 94/199 (47%), Positives = 133/199 (66%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 RPHF+ E + + +AG+DEVGRG LAGPV+ AA++LDP IP G+NDSK+++ K+R Sbjct: 3 RPHFQFETDLAARGYLRIAGVDEVGRGPLAGPVMAAAVVLDPGAIPEGLNDSKQVTAKRR 62 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E L ++ A + + A ID+ NI +A A+ A++ L P ALIDGR P+D Sbjct: 63 EALAAQLAQVAQVGVGVAEVAEIDRLNIRRAAHLAMLRALDALPAPPDMALIDGRDRPDD 122 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LPC A A+IKGD+ SLSIAAASI+AKV RDR+M ++P YG++++ GYPT H+ + Sbjct: 123 LPCAAHAIIKGDTKSLSIAAASIVAKVARDRVMTALAAEFPGYGWETNAGYPTQAHRAAL 182 Query: 189 KEKGPSCIHRLTFRPLRNL 207 + G S HR +FRP+ N+ Sbjct: 183 LDIGVSPHHRRSFRPVHNI 201 >gi|326389492|ref|ZP_08211059.1| Ribonuclease H [Thermoanaerobacter ethanolicus JW 200] gi|325994497|gb|EGD52922.1| Ribonuclease H [Thermoanaerobacter ethanolicus JW 200] Length = 242 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 83/189 (43%), Positives = 114/189 (60%), Gaps = 2/189 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + N+ +AG+DE GRG L GP+V A +IL INDSKK+S +KRE L E Sbjct: 48 YENQLYQLNLNFIAGVDEAGRGPLVGPIVAACVILPKEVFIPEINDSKKLSEEKREVLSE 107 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI +I + IDK NI AT A+ A+ +Q L+D +IP+ + Sbjct: 108 VIKKVAISYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQ-IEIN 166 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A++KGDS S+SIAAASI+AKV RD++M+ HK YP Y F+ + GY T +H + +K+ G Sbjct: 167 QKAIVKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYG 226 Query: 193 PSCIHRLTF 201 P IHR TF Sbjct: 227 PCPIHRKTF 235 >gi|311280848|ref|YP_003943079.1| Ribonuclease H [Enterobacter cloacae SCF1] gi|308750043|gb|ADO49795.1| Ribonuclease H [Enterobacter cloacae SCF1] Length = 198 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 87/183 (47%), Positives = 112/183 (61%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L+++I A+ S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALFDEIKEKALCWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L + P LIDG P LP + AV+KGDS Sbjct: 71 GRAEPHEIDELNILHATMLAMQRAVAGLHITPEYVLIDGNRCPA-LPVPSMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H + + E GP+ HR +F P Sbjct: 130 AEISAASILAKVTRDAEMAELDVTFPQYGFAQHKGYPTAFHLEKLAEHGPTEQHRRSFGP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|256003759|ref|ZP_05428747.1| Ribonuclease H [Clostridium thermocellum DSM 2360] gi|281417482|ref|ZP_06248502.1| Ribonuclease H [Clostridium thermocellum JW20] gi|255992320|gb|EEU02414.1| Ribonuclease H [Clostridium thermocellum DSM 2360] gi|281408884|gb|EFB39142.1| Ribonuclease H [Clostridium thermocellum JW20] gi|316940489|gb|ADU74523.1| Ribonuclease H [Clostridium thermocellum DSM 1313] Length = 261 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 86/189 (45%), Positives = 120/189 (63%), Gaps = 2/189 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E ++ +AGIDE GRG LAGPVV AA+IL + G+NDSKK++ +RE+L++ Sbjct: 68 YEKEAYQRGYKLIAGIDEAGRGPLAGPVVAAAVILPQDVFIEGLNDSKKLTENQREKLFD 127 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI + I + ID+ NI AT A+ AV NL+ +P ID + +D+ + Sbjct: 128 VINDKAIGVGIGIVDEKQIDEINILNATKKAMKLAVGNLKPVPDILFIDSLKL-DDINIE 186 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +++KGD+ S+SIAAASIIAKVTRDR++R KKYP YGF H GY T +H + IK+ G Sbjct: 187 QNSIVKGDAKSVSIAAASIIAKVTRDRILREMDKKYPMYGFARHKGYGTGEHIEAIKKYG 246 Query: 193 PSCIHRLTF 201 IHR++F Sbjct: 247 ICPIHRVSF 255 >gi|15604747|ref|NP_219531.1| ribonuclease HII [Chlamydia trachomatis D/UW-3/CX] gi|255310830|ref|ZP_05353400.1| ribonuclease HII [Chlamydia trachomatis 6276] gi|255317130|ref|ZP_05358376.1| ribonuclease HII [Chlamydia trachomatis 6276s] gi|7227924|sp|O84032|RNH2_CHLTR RecName: Full=Ribonuclease HII; Short=RNase HII gi|3328419|gb|AAC67619.1| Ribonuclease HII [Chlamydia trachomatis D/UW-3/CX] gi|296436469|gb|ADH18639.1| ribonuclease HII [Chlamydia trachomatis G/11222] gi|297748160|gb|ADI50706.1| Ribonuclease HII [Chlamydia trachomatis D-EC] gi|297749040|gb|ADI51718.1| Ribonuclease HII [Chlamydia trachomatis D-LC] Length = 217 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 87/195 (44%), Positives = 117/195 (60%), Gaps = 4/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E E+ VAG+DE GRG LAGPVV A IL + GI+DSKK++ K+R LYE Sbjct: 17 FENQAIEQGYSQVAGVDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQRRYLYE 76 Query: 74 KITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + S + ID+ NI +AT +A+ A+ +L+ P L+DG +P +P Sbjct: 77 LLLEDPEVDCGVGVISVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLFLPHKVP- 135 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGD+ S+SIAAASIIAK RD LMR H +YP+YGFD H GY TA H Q +K Sbjct: 136 -SLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHLQALKHF 194 Query: 192 GPSCIHRLTFRPLRN 206 GP HR +F P++ Sbjct: 195 GPCVYHRKSFSPVKE 209 >gi|296110320|ref|YP_003620701.1| ribonuclease HII [Leuconostoc kimchii IMSNU 11154] gi|295831851|gb|ADG39732.1| ribonuclease HII [Leuconostoc kimchii IMSNU 11154] Length = 254 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 84/198 (42%), Positives = 118/198 (59%), Gaps = 3/198 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E + M +AG+DEVGRG LAGPV+ AA+IL + + DSK++S KR++ Sbjct: 58 RFAFERHFWNQGMSDIAGVDEVGRGPLAGPVIAAAVILPHDFNVVEVIDSKQLSADKRDK 117 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY+ I + A+ I + ID NI++A A+ AV+NL P LID ++ +L Sbjct: 118 LYDLILAQAVSIGVGVVDAPTIDDINIYQAARLAMTKAVQNLAPEPDVLLIDAMTL--NL 175 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +IKGD++S SI AASI+AKVTRDRLM YP YGF + GY T H ++ Sbjct: 176 PLPQEPLIKGDALSNSIGAASIVAKVTRDRLMADYDDIYPGYGFAKNAGYGTKLHLDQMR 235 Query: 190 EKGPSCIHRLTFRPLRNL 207 + G + IHR +F P+R+L Sbjct: 236 QLGITPIHRRSFGPVRDL 253 >gi|296435545|gb|ADH17719.1| ribonuclease HII [Chlamydia trachomatis G/9768] gi|296437405|gb|ADH19566.1| ribonuclease HII [Chlamydia trachomatis G/11074] gi|297139904|gb|ADH96662.1| ribonuclease HII [Chlamydia trachomatis G/9301] Length = 217 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 88/195 (45%), Positives = 117/195 (60%), Gaps = 4/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E E+ VAGIDE GRG LAGPVV A IL + GI+DSKK++ K+R LYE Sbjct: 17 FENQAIEQGYSQVAGIDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQRRYLYE 76 Query: 74 KITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + S + ID+ NI +AT +A+ A+ +L+ P L+DG +P +P Sbjct: 77 LLLEDPEVDCGVGVVSVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLFLPHKVP- 135 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGD+ S+SIAAASIIAK RD LMR H +YP+YGFD H GY TA H Q +K Sbjct: 136 -SLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHLQALKHF 194 Query: 192 GPSCIHRLTFRPLRN 206 GP HR +F P++ Sbjct: 195 GPCVYHRKSFSPVKE 209 >gi|293390804|ref|ZP_06635138.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951338|gb|EFE01457.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D7S-1] Length = 199 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 81/195 (41%), Positives = 117/195 (60%), Gaps = 1/195 (0%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 ++ + +AG+DEVGRG L G VV AA+ILDP G+ DSK +S KKR L E Sbjct: 1 MDKFTYPQGYELIAGVDEVGRGPLVGAVVTAAVILDPKQTIEGLADSKTLSEKKRLLLAE 60 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I A+ ++ A ID+ NI A++ A+ A+++L++ P L+DG IP +L Sbjct: 61 EIKQKALAWALGRAEPHEIDELNILHASMLAMERAIKHLKIQPHFVLVDGNRIPPNLMIP 120 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A AV+KGD++ I+AASI+AKV RD+ M KKYP Y F H GYPT H + ++E G Sbjct: 121 AQAVVKGDALVPEISAASILAKVARDQEMIELDKKYPPYEFAKHKGYPTKLHLEKLREFG 180 Query: 193 PSCIHRLTFRPLRNL 207 +R +F P++ L Sbjct: 181 VLPEYRRSFAPVKKL 195 >gi|87118612|ref|ZP_01074511.1| ribonuclease HII [Marinomonas sp. MED121] gi|86166246|gb|EAQ67512.1| ribonuclease HII [Marinomonas sp. MED121] Length = 214 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 88/182 (48%), Positives = 119/182 (65%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG VV AA+ILDPNN + DSKK+S KKR L+++I A+ I+ Sbjct: 28 AGSDEAGRGPLAGDVVAAAVILDPNNPIASLADSKKLSEKKRVALFDEIKEKALAFCIAR 87 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS ID+ NI A++ A+ A+ L+V P ALIDG IP+DLPC A AV+KGD + Sbjct: 88 ASVAEIDELNILHASMLAMQRAISGLRVTPEHALIDGNRIPKDLPCPAEAVVKGDDRVEA 147 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AKV RD + ++YP YG + H GYPTA+H ++ G + IHR +F P++ Sbjct: 148 ISAASILAKVERDNEISALAERYPGYGLEKHKGYPTAQHLAALETLGVTPIHRQSFGPVK 207 Query: 206 NL 207 + Sbjct: 208 RI 209 >gi|125973279|ref|YP_001037189.1| ribonuclease HII [Clostridium thermocellum ATCC 27405] gi|189043587|sp|A3DDG7|RNH2_CLOTH RecName: Full=Ribonuclease HII; Short=RNase HII gi|125713504|gb|ABN51996.1| RNase HII [Clostridium thermocellum ATCC 27405] Length = 256 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 86/189 (45%), Positives = 120/189 (63%), Gaps = 2/189 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E ++ +AGIDE GRG LAGPVV AA+IL + G+NDSKK++ +RE+L++ Sbjct: 63 YEKEAYQRGYKLIAGIDEAGRGPLAGPVVAAAVILPQDVFIEGLNDSKKLTENQREKLFD 122 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI + I + ID+ NI AT A+ AV NL+ +P ID + +D+ + Sbjct: 123 VINDKAIGVGIGIVDEKQIDEINILNATKKAMKLAVGNLKPVPDILFIDSLKL-DDINIE 181 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +++KGD+ S+SIAAASIIAKVTRDR++R KKYP YGF H GY T +H + IK+ G Sbjct: 182 QNSIVKGDAKSVSIAAASIIAKVTRDRILREMDKKYPMYGFARHKGYGTGEHIEAIKKYG 241 Query: 193 PSCIHRLTF 201 IHR++F Sbjct: 242 ICPIHRVSF 250 >gi|241760682|ref|ZP_04758774.1| ribonuclease HII [Neisseria flavescens SK114] gi|241318863|gb|EER55389.1| ribonuclease HII [Neisseria flavescens SK114] Length = 230 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 82/182 (45%), Positives = 108/182 (59%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL + G+ DSKK+S KKR+ L + I A+ SI+ Sbjct: 40 AGVDEAGRGPLVGSVFAAAVILPEHFDLPGLTDSKKLSEKKRDILAQLIKEQAVAWSIAF 99 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A I + NI AT+ A+ +VE L V P IDG +P+DL A AV+KGDS + Sbjct: 100 ADPDEILQLNILHATMAAMKRSVEGLSVTPDKVWIDGNRVPKDLNVPAEAVVKGDSKIIE 159 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M K+YP YGFD H GY TA+H +K+ G HR F P++ Sbjct: 160 ISAASVLAKTARDAEMYELAKRYPQYGFDCHKGYGTAQHLAALKQYGVLPEHRRDFAPVK 219 Query: 206 NL 207 L Sbjct: 220 TL 221 >gi|309389199|gb|ADO77079.1| Ribonuclease H [Halanaerobium praevalens DSM 2228] Length = 271 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 83/196 (42%), Positives = 126/196 (64%), Gaps = 4/196 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 +LE +K + GIDE GRG LAGPVV AA++LDP N +G++DSKK++ KRE L+ Sbjct: 74 QLEKEYSQKGYQVIIGIDEAGRGPLAGPVVAAAVLLDPQNKIYGLDDSKKLNLTKRENLF 133 Query: 73 EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL----QVIPRSALIDGRSIPED 128 ++I + A + I A+ IDK+NI +AT A+ AV++L Q P LIDG ++ Sbjct: 134 KQIKAKAKVGIGQATSSEIDKYNIREATFTAMKRAVKDLLPKLQKQPDLLLIDGNAVIPG 193 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L + ++I GD+ +IAAASIIAKV+RD+L+ +++P+Y +S+ GY TA+H + Sbjct: 194 LTVEQESIIDGDAKVNNIAAASIIAKVSRDKLIYKYAEEFPEYNLESNKGYGTAEHIAAL 253 Query: 189 KEKGPSCIHRLTFRPL 204 K+ G + IHR +F + Sbjct: 254 KKYGSTPIHRKSFARV 269 >gi|197303275|ref|ZP_03168316.1| hypothetical protein RUMLAC_01998 [Ruminococcus lactaris ATCC 29176] gi|197297701|gb|EDY32260.1| hypothetical protein RUMLAC_01998 [Ruminococcus lactaris ATCC 29176] Length = 252 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 88/186 (47%), Positives = 114/186 (61%), Gaps = 4/186 (2%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII- 81 + GIDE GRG LAGPVV A+IL + +NDSKK+S +REELY++I A+ Sbjct: 69 YRCICGIDEAGRGPLAGPVVAGAVILPADCEILYLNDSKKLSAARREELYDEIMEKAVAT 128 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I AS ID+ NI +AT +A+ AV L P L D +IPE + +IKGD+ Sbjct: 129 GIGMASPARIDEINILQATYEAMREAVSKLSREPDLLLNDAVTIPE-MTIMQVPIIKGDA 187 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 S+SIAAASI+AKVTRDRLM K P+YGF H GY + +H I++ GPS IHR TF Sbjct: 188 KSVSIAAASILAKVTRDRLMIEYDKILPEYGFAGHKGYGSKEHIAAIQKYGPSPIHRRTF 247 Query: 202 RPLRNL 207 ++N Sbjct: 248 --IKNF 251 >gi|58337276|ref|YP_193861.1| ribonuclease HII [Lactobacillus acidophilus NCFM] gi|73917609|sp|Q5FKE4|RNH2_LACAC RecName: Full=Ribonuclease HII; Short=RNase HII gi|58254593|gb|AAV42830.1| Ribonuclease HII [Lactobacillus acidophilus NCFM] Length = 250 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 90/198 (45%), Positives = 124/198 (62%), Gaps = 4/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E +K VAG+DEVGRG LAGPVV AA+I+D + +NDSKK+S +KR + Sbjct: 54 RFLYEKQFWQKG-QLVAGVDEVGRGPLAGPVVTAAVIIDQDFDLLDVNDSKKLSPEKRLK 112 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY KI A+ +++ + Q ID+ NI++A A+ AV L + P + L+D ++P DL Sbjct: 113 LYPKILEEAVSVAVGVKNAQVIDQINIYEADRQAMAQAVNALDIKPDALLVDAMNVPVDL 172 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +IKGD+ S SIAAASI+AKV RD+LM K YP YGF + GY T +H +K Sbjct: 173 P--QIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPHYGFSRNAGYGTKEHIDALK 230 Query: 190 EKGPSCIHRLTFRPLRNL 207 + GP+ IHR TF P+ + Sbjct: 231 QYGPTHIHRKTFAPVSDF 248 >gi|312898597|ref|ZP_07757987.1| ribonuclease HII [Megasphaera micronuciformis F0359] gi|310620516|gb|EFQ04086.1| ribonuclease HII [Megasphaera micronuciformis F0359] Length = 266 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 90/197 (45%), Positives = 129/197 (65%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + K +AGIDE GRG +AGPV +AA+IL + +G+NDSKK+SHK+REEL Sbjct: 63 LRYEEKLYAKGYRYIAGIDEAGRGPVAGPVTIAAVILPIRPLIYGLNDSKKVSHKRREEL 122 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ I + AI +S + S ID+++I+ AT A+Y AV+ L + P++ LID +P DL Sbjct: 123 FDTIMNEAIAVSCINFSEADIDRYDIYHATQRAMYTAVKTLDISPQAVLIDAMPLP-DLE 181 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +++ GD+ S SIAAASIIAKVTRDR+M ++YP YGF H GY T H+ I + Sbjct: 182 IYHESIVGGDAQSQSIAAASIIAKVTRDRIMEEYDRQYPRYGFAEHKGYLTQTHKDAIAQ 241 Query: 191 KGPSCIHRLTFRPLRNL 207 GP IHR +F P++++ Sbjct: 242 YGPCPIHRKSFEPVKSM 258 >gi|104783181|ref|YP_609679.1| ribonuclease HII [Pseudomonas entomophila L48] gi|122402183|sp|Q1I640|RNH2_PSEE4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|95112168|emb|CAK16895.1| ribonuclease HII [Pseudomonas entomophila L48] Length = 207 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 89/182 (48%), Positives = 116/182 (63%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ KR+ L+++I A+ I Sbjct: 13 LVAGVDEVGRGPLCGAVVTAAVILDPRRPILGLNDSKKLTEAKRDALFDEIREKALSFCI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI +AT+ A+ AVE L + P+ ALIDG P+ L A V+KGDS Sbjct: 73 ARAEVEEIDRLNILQATMLAMQRAVEGLHITPKLALIDGNRCPK-LAVPAAPVVKGDSQV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKVTRDR M YP YG H GYPT H + + GP+ IHR +F P Sbjct: 132 PAIAAASILAKVTRDREMSEFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 191 Query: 204 LR 205 +R Sbjct: 192 VR 193 >gi|146297153|ref|YP_001180924.1| ribonuclease H [Caldicellulosiruptor saccharolyticus DSM 8903] gi|189043571|sp|A4XLE8|RNH2_CALS8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|145410729|gb|ABP67733.1| RNase HII [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 205 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 89/197 (45%), Positives = 127/197 (64%), Gaps = 4/197 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FELE + ++ + G+DE GRG LAGPV AA+I+D I G+ DSKK++ KKRE+L Sbjct: 10 FELEENLLKEGYRFICGVDEAGRGPLAGPVFAAAVIMDREIIIEGVRDSKKLTPKKREKL 69 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +E+I +I S++ ++ ID+ NI+ AT A+ +A+E L+++P L+DG IP DL Sbjct: 70 FEEIVKESITYSVAMVDNKTIDEININNATFLAMKNAIEALELVPDIVLVDGYEIP-DLN 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD S SIA ASI+AKV+RDR + YP Y F+ H GY T +H ++I E Sbjct: 129 LPQKALIKGDRKSYSIACASILAKVSRDRFITQISSLYPVYKFEKHKGYGTKEHIRLILE 188 Query: 191 KGPSCIHRLTFRPLRNL 207 GP IHR +F L+N+ Sbjct: 189 YGPCEIHRKSF--LKNI 203 >gi|325290406|ref|YP_004266587.1| RNase HII [Syntrophobotulus glycolicus DSM 8271] gi|324965807|gb|ADY56586.1| RNase HII [Syntrophobotulus glycolicus DSM 8271] Length = 227 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 83/196 (42%), Positives = 121/196 (61%), Gaps = 2/196 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 LE + ++ VAG+DE GRG LAGPV+ AA IL + +NDSKK++ ++RE+L+E Sbjct: 25 LERKLVKEGFMFVAGVDEAGRGPLAGPVIAAACILPESFDLPYLNDSKKLTARRREDLFE 84 Query: 74 KITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I A +++ + ID+ NI A+ A+ A+E L + P L+DGR D+ C+ Sbjct: 85 RIKDQASAYAVAGVEAEEIDRMNILHASKLAMKKAIEALHIPPGYVLVDGRD-EIDIVCR 143 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 AVI GD+ IAA SI+AKVTRDR+M H YP Y FD H GY T H +++++ G Sbjct: 144 QKAVIGGDAKCACIAAGSILAKVTRDRIMDDLHMLYPQYAFDKHKGYGTRLHFELLQKYG 203 Query: 193 PSCIHRLTFRPLRNLS 208 P IHR +F P++ L+ Sbjct: 204 PCPIHRYSFAPVKALA 219 >gi|312622766|ref|YP_004024379.1| ribonuclease h [Caldicellulosiruptor kronotskyensis 2002] gi|312203233|gb|ADQ46560.1| Ribonuclease H [Caldicellulosiruptor kronotskyensis 2002] Length = 206 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 128/197 (64%), Gaps = 4/197 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE+E + + + G+DE GRG LAGPV AA+++D I G+ DSKK++ KKRE+L Sbjct: 10 FEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREKL 69 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +E+I +I S++ + ID+ NI+ AT A+ +A+ENL++ P L+DG IP +L Sbjct: 70 FEEIIKESIAYSVAMVDSKVIDEININNATFLAMKNAIENLKIEPDIVLVDGYKIP-NLS 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD S SIA ASI+AKV+RDR + KYP Y F+ H GY T +H +++++ Sbjct: 129 FNQRAIIKGDKKSYSIACASILAKVSRDRFIVEISSKYPLYKFEKHKGYGTKEHIEILQK 188 Query: 191 KGPSCIHRLTFRPLRNL 207 GP IHR++F L+N+ Sbjct: 189 YGPCEIHRISF--LKNI 203 >gi|333011022|gb|EGK30441.1| ribonuclease HII family protein [Shigella flexneri K-272] gi|333021817|gb|EGK41066.1| ribonuclease HII family protein [Shigella flexneri K-227] Length = 198 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 90/185 (48%), Positives = 113/185 (61%), Gaps = 2/185 (1%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81 M VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LYE+I A+ Sbjct: 9 MQLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEEIKEKALSW 68 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S+ A ID+ NI AT+ A+ AV L + P LIDG P+ LP A AV+KGDS Sbjct: 69 SLGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMAVVKGDS 127 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 128 RVPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSF 187 Query: 202 RPLRN 206 P++ Sbjct: 188 GPVKR 192 >gi|167032173|ref|YP_001667404.1| ribonuclease HII [Pseudomonas putida GB-1] gi|189043642|sp|B0KSB3|RNH2_PSEPG RecName: Full=Ribonuclease HII; Short=RNase HII gi|166858661|gb|ABY97068.1| Ribonuclease H [Pseudomonas putida GB-1] Length = 207 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 90/182 (49%), Positives = 116/182 (63%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ KRE L+++I A+ I Sbjct: 13 LVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEAKREALFDEICEKALSFCI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI +AT+ A+ AVE L + P+ ALIDG P+ L A V+KGDS Sbjct: 73 ARAEVEEIDRLNILQATMLAMQRAVEGLHITPKLALIDGNRCPK-LAVPASPVVKGDSQV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKVTRDR M YP YG H GYPT H + + GP+ IHR +F P Sbjct: 132 PAIAAASILAKVTRDREMSAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 191 Query: 204 LR 205 +R Sbjct: 192 VR 193 >gi|291542667|emb|CBL15777.1| RNase HII [Ruminococcus bromii L2-63] Length = 201 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 83/192 (43%), Positives = 115/192 (59%), Gaps = 2/192 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 E E + + G+DE GRG LAGPV AA+IL N + G+NDSKK+S KKRE Sbjct: 3 WLEYENKNIARGFLSICGVDEAGRGPLAGPVCAAAVILPENTVIEGVNDSKKLSEKKREA 62 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L++ I A+ SI+ AS + I++ NI A + A+ AVE L+ A+IDG +P L Sbjct: 63 LFDVIKEQALAYSIAFASVEEIEEMNILNAAMLAMKRAVEGLEPRADYAMIDGNRMPP-L 121 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + ++KGD+ S+SIA ASI+AKV+RDRL+ K++P Y F H GY T H + I Sbjct: 122 SIEGECIVKGDAKSMSIACASILAKVSRDRLLYEYDKEFPQYLFAKHKGYGTKAHIEAIL 181 Query: 190 EKGPSCIHRLTF 201 + GP HR +F Sbjct: 182 KYGPCKYHRPSF 193 >gi|254479478|ref|ZP_05092803.1| ribonuclease HII [Carboxydibrachium pacificum DSM 12653] gi|214034582|gb|EEB75331.1| ribonuclease HII [Carboxydibrachium pacificum DSM 12653] Length = 236 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 85/189 (44%), Positives = 114/189 (60%), Gaps = 2/189 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + E+ + +AG+DE GRG L GPVV A +IL INDSKK+ +KRE+L E Sbjct: 42 YEKKLYEEGLNFIAGVDEAGRGPLVGPVVAACVILPKEIFIPEINDSKKLPEEKREKLAE 101 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI I + ID+ NI ATL A+ A+ ++ L+D SIP D+P + Sbjct: 102 VIKKEAISYGIGIVDCREIDEINILNATLKAMKKAIFEVKEKIEYLLVDAISIP-DMPIK 160 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++KGDS S+SIAAASI+AKV RDR+MR HK YP Y F + GY T +H + +K+ G Sbjct: 161 QLPIVKGDSKSISIAAASILAKVERDRIMREYHKLYPQYNFAKNKGYGTKEHIEALKKHG 220 Query: 193 PSCIHRLTF 201 P IHR T+ Sbjct: 221 PCPIHRRTY 229 >gi|170723229|ref|YP_001750917.1| ribonuclease HII [Pseudomonas putida W619] gi|229564298|sp|B1JBP6|RNH2_PSEPW RecName: Full=Ribonuclease HII; Short=RNase HII gi|169761232|gb|ACA74548.1| Ribonuclease H [Pseudomonas putida W619] Length = 207 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 92/182 (50%), Positives = 117/182 (64%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ KRE L+++I + A+ I Sbjct: 13 LVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEAKREALFDEICAKALSFCI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI +AT+ A+ AVE L V P+ ALIDG P+ L A VIKGDS Sbjct: 73 ARAEVEEIDRLNILQATMLAMQRAVEGLSVTPKLALIDGNRCPK-LSVPAAPVIKGDSQV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKVTRDR M YP YG H GYPT H + + GP+ IHR +F P Sbjct: 132 PAIAAASILAKVTRDREMSAFELIYPGYGMGGHKGYPTPVHLEALARLGPTPIHRRSFAP 191 Query: 204 LR 205 +R Sbjct: 192 VR 193 >gi|160900366|ref|YP_001565948.1| ribonuclease HII [Delftia acidovorans SPH-1] gi|238687159|sp|A9BML8|RNH2_DELAS RecName: Full=Ribonuclease HII; Short=RNase HII gi|160365950|gb|ABX37563.1| Ribonuclease H [Delftia acidovorans SPH-1] Length = 235 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 91/182 (50%), Positives = 122/182 (67%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82 VAG+DE GRG LAGPVV AA+ILD N G+NDSKK++ +RE LY++I + A+ S Sbjct: 23 GLVAGVDEAGRGPLAGPVVAAAVILDDLNPIEGLNDSKKLTAARREALYDEIRAKALCCS 82 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ AS + ID+ NI +ATL A+ AV L++ P L+DG +P L QA A++KGDS+ Sbjct: 83 IAEASVEEIDRLNILQATLLAMRRAVLGLRLKPVLVLVDGNQLPV-LDVQAEAIVKGDSL 141 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKVTRDR H++YP+YGFD H GY TA H ++ G HR TF Sbjct: 142 VQAISAASILAKVTRDRWCERLHEQYPEYGFDGHKGYGTAAHLAALRLHGACEEHRRTFA 201 Query: 203 PL 204 P+ Sbjct: 202 PV 203 >gi|306833475|ref|ZP_07466602.1| ribonuclease HII [Streptococcus bovis ATCC 700338] gi|304424245|gb|EFM27384.1| ribonuclease HII [Streptococcus bovis ATCC 700338] Length = 259 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 85/200 (42%), Positives = 122/200 (61%), Gaps = 6/200 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ +AGIDEVGRG LAGPVV A +IL N +NDSKKI K EE+ Sbjct: 58 LRYEKELYQQGYQAIAGIDEVGRGPLAGPVVTACVILPKNCKIKHLNDSKKIPKKHHEEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127 Y++I + A+ I I + ID+ NI++AT + A+ L+ P LID + Sbjct: 118 YQEILARALGIGIGIVDNNVIDQINIYEATKVGMLQAINQLKGEVTKPDYLLIDAMHLET 177 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +P Q+ ++KGD+ SLSIAAASI+AKVTRDR+M YP Y F+ +VGY T +H + Sbjct: 178 SIPQQS--LLKGDANSLSIAAASIVAKVTRDRMMADYANDYPGYAFEKNVGYGTKEHLEG 235 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 +K+ G + IHR TF P++++ Sbjct: 236 LKKYGITPIHRKTFEPIKSM 255 >gi|253687351|ref|YP_003016541.1| Ribonuclease H [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259494070|sp|C6DAJ7|RNH2_PECCP RecName: Full=Ribonuclease HII; Short=RNase HII gi|251753929|gb|ACT12005.1| Ribonuclease H [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 198 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 85/183 (46%), Positives = 114/183 (62%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP G+ DSK++S K+R LY++I A+ S+ Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVILDPTRPIVGLADSKQLSEKRRLALYDEIKEKALAWSL 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L V+P LIDG P LP + AV+KGDS Sbjct: 72 GRAEPEEIDQLNILHATMLAMQRAVAGLAVVPDFVLIDGNRCPA-LPMPSQAVVKGDSRV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M +++P YGF H GYPTA H + + G + HR +F P Sbjct: 131 AEISAASIMAKVTRDREMVELDERFPAYGFAQHKGYPTAFHLEKLAALGATEFHRRSFAP 190 Query: 204 LRN 206 ++ Sbjct: 191 VKR 193 >gi|331005976|ref|ZP_08329321.1| Ribonuclease HII [gamma proteobacterium IMCC1989] gi|330420221|gb|EGG94542.1| Ribonuclease HII [gamma proteobacterium IMCC1989] Length = 202 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 86/182 (47%), Positives = 117/182 (64%), Gaps = 2/182 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DEVGRG LAG VV AA+IL PN G+NDSKK+S KKR+ L++ I A+ SI+ Sbjct: 14 AGVDEVGRGPLAGDVVTAAVILGPNKPIEGLNDSKKLSEKKRDALFDIIKERALSWSIAR 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI +A+L A+ AV+ L + P +DG +P A VIKGDS + Sbjct: 74 CSVEDIDQINILQASLLAMKKAVDGLAITPEHVWVDGNKMPR-WNYTAETVIKGDSRVPA 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 IAAASI+AKVTRDR M ++YP YGF +H GYPT H ++ G + IHR ++ P++ Sbjct: 133 IAAASILAKVTRDREMVAYEEQYPGYGFAAHKGYPTKVHIDALQRLGITPIHRRSYAPVK 192 Query: 206 NL 207 + Sbjct: 193 KI 194 >gi|323705455|ref|ZP_08117030.1| Ribonuclease H [Thermoanaerobacterium xylanolyticum LX-11] gi|323535357|gb|EGB25133.1| Ribonuclease H [Thermoanaerobacterium xylanolyticum LX-11] Length = 252 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 84/189 (44%), Positives = 112/189 (59%), Gaps = 2/189 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + + GIDEVGRG LAGPVV +IL + I+DSKK+S KRE L E Sbjct: 58 YENELYNLDYKLIGGIDEVGRGPLAGPVVAGCVILPKQSFIPDIDDSKKLSESKRELLSE 117 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI I ++ ID+ NI +T +A+ A+ NL + L+D +IP D+ Sbjct: 118 IIKKKAIAYGIGIIDNEQIDRINILNSTYEAMKVAISNLNIKADFLLVDAITIP-DIDIA 176 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +IKGD+ S+SIAAASI+AKVTRD +MR + YP YGF + GY T +H + IK+ G Sbjct: 177 QIPIIKGDAKSISIAAASIVAKVTRDNIMRKYDEMYPQYGFCKNKGYGTKEHIEAIKKYG 236 Query: 193 PSCIHRLTF 201 P IHR TF Sbjct: 237 PCPIHRKTF 245 >gi|152968777|ref|YP_001333886.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893179|ref|YP_002917913.1| ribonuclease HII [Klebsiella pneumoniae NTUH-K2044] gi|262044746|ref|ZP_06017793.1| ribonuclease HII [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330001662|ref|ZP_08304088.1| ribonuclease HII [Klebsiella sp. MS 92-3] gi|166225193|sp|A6T4Y5|RNH2_KLEP7 RecName: Full=Ribonuclease HII; Short=RNase HII gi|150953626|gb|ABR75656.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545495|dbj|BAH61846.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259037896|gb|EEW39120.1| ribonuclease HII [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328537604|gb|EGF63824.1| ribonuclease HII [Klebsiella sp. MS 92-3] Length = 199 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 87/183 (47%), Positives = 113/183 (61%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L+++I A+ S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPAKPIVGLNDSKKLSEKRRLALFDEIKEKALCWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L ++P LIDG P LP + AV+KGDS Sbjct: 71 GRAEPHEIDELNILHATMLAMQRAVAGLSIVPEFVLIDGNRCP-SLPMPSQAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H Q ++E G + HR +F P Sbjct: 130 AEISAASILAKVTRDAEMATLDLAFPHYGFAQHKGYPTAVHLQKLQEHGATEHHRRSFGP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|227114701|ref|ZP_03828357.1| ribonuclease HII [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 198 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 88/183 (48%), Positives = 114/183 (62%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A+ S+ Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVILDPTRPIVGLADSKKLSEKRRLSLYDEIKEKALAWSL 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L V+P LIDG P LP A AV+KGDS Sbjct: 72 GRAEPEEIDQLNILHATMLAMQRAVAGLAVVPDFVLIDGNRCPA-LPMPAQAVVKGDSRV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M +++P YGF H GYPTA H + + G + HR +F P Sbjct: 131 AEISAASIMAKVTRDREMVELDQRFPAYGFAQHKGYPTAFHLEKLAALGATEFHRRSFAP 190 Query: 204 LRN 206 +R Sbjct: 191 VRR 193 >gi|144899371|emb|CAM76235.1| Ribonuclease HII [Magnetospirillum gryphiswaldense MSR-1] Length = 201 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 97/205 (47%), Positives = 122/205 (59%), Gaps = 9/205 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKIS 64 P LE + VAGIDEVGRG LAGPVV AAII+DP +P + +DSKK+S Sbjct: 1 MPDLSLETALG----GMVAGIDEVGRGPLAGPVVAAAIIIDPATLPAELAAHLDDSKKLS 56 Query: 65 HKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKRE L I +I+ AS + ID+ NI KAT A+ AV+ L +P AL+DG Sbjct: 57 AKKREHLDILIRQHCRFAIAQASVEEIDRLNILKATFLAMARAVDGLGTVPDHALVDGNR 116 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 P LPC A VI GD+ SLSIAAASIIAKV RDRLM +P YG+ ++ GY T H Sbjct: 117 -PPPLPCPAHCVIGGDAKSLSIAAASIIAKVFRDRLMTALDLDFPGYGWAANAGYGTKAH 175 Query: 185 QQVIKEKGPSCIHRLTFRPLRNLSV 209 + +K GP+ HR +F P+ + Sbjct: 176 MEALKRLGPTPHHRTSFAPVAQFQL 200 >gi|304404228|ref|ZP_07385890.1| Ribonuclease H [Paenibacillus curdlanolyticus YK9] gi|304347206|gb|EFM13038.1| Ribonuclease H [Paenibacillus curdlanolyticus YK9] Length = 206 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 91/192 (47%), Positives = 117/192 (60%), Gaps = 4/192 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E E ++ E+ +AGIDEVGRG L G VV AA+IL P + G+NDSKK+S KKR EL Sbjct: 2 LEYEKLLWEQGCSNIAGIDEVGRGCLFGDVVAAAVILPPGLVLDGVNDSKKLSEKKRNEL 61 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ SI+ ID+ NI +A+ A+ AV+ L V P L+D I DLP Sbjct: 62 YDIIIEHALYWSIARIDSDEIDRINIKQASRLAMKQAVQTLGVDPDHLLVDAEKIDLDLP 121 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLM-RIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A+IKGD+ S SIAAASI+AKVTRDRL YP YG H GY T H++ + Sbjct: 122 --QQAIIKGDATSQSIAAASILAKVTRDRLCTTEWESLYPGYGIAIHKGYATKLHREKLL 179 Query: 190 EKGPSCIHRLTF 201 E GP+ +HR +F Sbjct: 180 ELGPTPLHRKSF 191 >gi|299134668|ref|ZP_07027860.1| Ribonuclease H [Afipia sp. 1NLS2] gi|298590478|gb|EFI50681.1| Ribonuclease H [Afipia sp. 1NLS2] Length = 254 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 96/196 (48%), Positives = 134/196 (68%), Gaps = 1/196 (0%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 RP F E + ++ +WPVAG DEVGRG LAGPVV AA+ILDP+ IP GI+DSK+++ + R Sbjct: 24 RPSFRRERALLKQGIWPVAGCDEVGRGPLAGPVVAAAVILDPDRIPKGIDDSKRLTVEAR 83 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E L+E+I ++A++S+++A ID+ NI +A+L A+ AV+ L PR +DGR D Sbjct: 84 EALFEEICATAMVSVAAAPPWRIDRDNILRASLWALARAVQGLPQAPRHVFVDGRD-RID 142 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 +PC VI GD + LSI AASI+AKVTRDRLM + +P+YGFDSH+GY +H + Sbjct: 143 VPCGCEPVIGGDGLLLSIGAASIVAKVTRDRLMCRLARVHPEYGFDSHMGYGVPRHLAAL 202 Query: 189 KEKGPSCIHRLTFRPL 204 + GP+ HR F P+ Sbjct: 203 ELHGPTPHHRRYFAPV 218 >gi|261822585|ref|YP_003260691.1| ribonuclease HII [Pectobacterium wasabiae WPP163] gi|261606598|gb|ACX89084.1| Ribonuclease H [Pectobacterium wasabiae WPP163] Length = 198 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 86/183 (46%), Positives = 115/183 (62%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A+ S+ Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVILDPTRPIVGLADSKKLSEKRRLALYDEINEKALAWSL 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L ++P LIDG P LP +A AV+KGDS Sbjct: 72 GRAEPEEIDQLNILHATMLAMQRAVAGLSIVPDFVLIDGNRCPA-LPMRAQAVVKGDSRV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M +++P YGF H GYPTA H + + G + HR +F P Sbjct: 131 AEISAASIMAKVTRDREMVELDQRFPAYGFAQHKGYPTAFHLEKLAALGATEFHRRSFAP 190 Query: 204 LRN 206 ++ Sbjct: 191 VKR 193 >gi|332307491|ref|YP_004435342.1| Ribonuclease H [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174820|gb|AEE24074.1| Ribonuclease H [Glaciecola agarilytica 4H-3-7+YE-5] Length = 197 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 86/183 (46%), Positives = 118/183 (64%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DEVGRG L G VV AA+ILDP+ G+ DSKKIS KKR L++ I +A+ +S Sbjct: 3 QLIAGVDEVGRGPLVGDVVTAAVILDPSKPIAGLADSKKISEKKRLALFDLIMQNALSVS 62 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + AS + ID+ NI AT+ A+ AV+ L P +DG P+ + AV+KGDS+ Sbjct: 63 VGRASPEEIDELNILHATMLAMTRAVQGLATQPTFVRVDGNRCPK-WNYASEAVVKGDSL 121 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASIIAKVTRD M H+KYP+YGF H GYPT H + + E GP +R++F+ Sbjct: 122 YAEISAASIIAKVTRDAEMTALHEKYPEYGFGQHKGYPTKAHLEKLAEFGPLPEYRMSFK 181 Query: 203 PLR 205 P++ Sbjct: 182 PVQ 184 >gi|310658877|ref|YP_003936598.1| ribonuclease hii (rnase hii) [Clostridium sticklandii DSM 519] gi|308825655|emb|CBH21693.1| Ribonuclease HII (RNase HII) [Clostridium sticklandii] Length = 256 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 81/197 (41%), Positives = 120/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F +E + + + G+DE GRG LAGPVV A +ILD N + GI+DSKK+S K R+ + Sbjct: 61 FIIEETLFAEGYKKIGGVDEAGRGPLAGPVVSACVILDKNPMIDGIDDSKKVSEKNRDRI 120 Query: 72 YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ I +S II I + ID++NI AT A+ ++ P ++DG D+ Sbjct: 121 FDTIVNSDIIYGIGISDSNEIDEYNILNATFLAMKRSIAMASQRPDFIIVDGNQQITDIN 180 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +++GDS S+SIA ASI+AKVTRD++M+ + YP YGFD H GY T +H + I + Sbjct: 181 HPQRCIVQGDSKSISIACASILAKVTRDKIMKQYAEIYPQYGFDKHKGYGTKEHIEAINK 240 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHRL+F L+N+ Sbjct: 241 YGITPIHRLSF--LKNI 255 >gi|76787278|ref|YP_329728.1| ribonuclease HII [Streptococcus agalactiae A909] gi|77406999|ref|ZP_00784013.1| ribonuclease HII [Streptococcus agalactiae H36B] gi|97189340|sp|Q3K175|RNH2_STRA1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|76562335|gb|ABA44919.1| ribonuclease HII [Streptococcus agalactiae A909] gi|77174385|gb|EAO77240.1| ribonuclease HII [Streptococcus agalactiae H36B] Length = 253 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 91/209 (43%), Positives = 128/209 (61%), Gaps = 7/209 (3%) Query: 4 NSIPERPHFE----LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIND 59 + + E E E + +++ +AGIDEVGRG LAGPVV AA+IL PN +ND Sbjct: 46 SDLDEEARLEQMLVYEKKLYIEHINLIAGIDEVGRGPLAGPVVAAAVILPPNCKIKHLND 105 Query: 60 SKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 SKKI KK +E+Y+ I A+ + I Q ID NI++AT A+ AV +L V+P Sbjct: 106 SKKIPKKKHQEIYQNILDQALAVGIGIQDSQCIDDINIYEATKHAMIDAVSHLSVVPEHL 165 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 LID + DLP +IKGD+ SLSIAAASI+AKVTRD++M KYP Y F + G Sbjct: 166 LIDAMVL--DLPIPQTKIIKGDANSLSIAAASIVAKVTRDKIMSDYDSKYPGYAFSKNAG 223 Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 Y T +H + +++ G + IHR +F P++++ Sbjct: 224 YGTKEHLEGLQKYGITPIHRKSFEPIKSM 252 >gi|312127966|ref|YP_003992840.1| ribonuclease h [Caldicellulosiruptor hydrothermalis 108] gi|311777985|gb|ADQ07471.1| Ribonuclease H [Caldicellulosiruptor hydrothermalis 108] Length = 206 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 128/197 (64%), Gaps = 4/197 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE+E + + + G+DE GRG LAGPV AA+++D I G+ DSKK++ KKRE+L Sbjct: 10 FEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREKL 69 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +E+I +I S++ + ID+ NI+ AT A+ +A+ENL++ P L+DG IP +L Sbjct: 70 FEEIIKESIAYSVAMVDSKIIDEININNATFLAMKNAIENLKIEPDIVLVDGYEIP-NLG 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD S SIA ASI+AKV+RDR + KYP Y F+ H GY T +H +++++ Sbjct: 129 FNQRAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPLYKFEKHKGYGTKEHIEILQK 188 Query: 191 KGPSCIHRLTFRPLRNL 207 GP IHR++F L+N+ Sbjct: 189 YGPCEIHRISF--LKNI 203 >gi|238754793|ref|ZP_04616144.1| Ribonuclease HII [Yersinia ruckeri ATCC 29473] gi|238706953|gb|EEP99319.1| Ribonuclease HII [Yersinia ruckeri ATCC 29473] Length = 187 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 86/183 (46%), Positives = 112/183 (61%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A+ S+ Sbjct: 2 IAGVDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEIIEKALSWSLG 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P LP + AV+KGDS Sbjct: 62 RAEPAEIDELNILHATMLAMQRAVAGLHIAPDYVLIDGNRCPA-LPMPSLAVVKGDSRVA 120 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M +P YGF H GYPTA H + + G + HR +F P+ Sbjct: 121 EISAASIVAKVTRDREMAELDSYFPGYGFAQHKGYPTALHLERLAALGATEHHRRSFSPV 180 Query: 205 RNL 207 +N+ Sbjct: 181 KNV 183 >gi|330959804|gb|EGH60064.1| putative ribonuclease HII [Pseudomonas syringae pv. maculicola str. ES4326] Length = 208 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 89/184 (48%), Positives = 118/184 (64%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP++ G+NDSKK+S KKR+ LY +I A+ SI Sbjct: 13 VVAGVDEVGRGPLCGDVVTAAVILDPSHPIQGLNDSKKLSEKKRDLLYAEICEKAVAWSI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A+ ID+ NI +AT+ A+ AV+ L V P L+DG P LP +A A+IKGD + Sbjct: 73 GRATVDEIDQLNILQATMLAMQRAVQGLSVTPTLVLVDGNRCP-SLPMRAEAIIKGDGLI 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AAS++AKV RDR M+ A YP YG H GYP+ H + + G + IHR TF P Sbjct: 132 AEISAASVLAKVVRDREMQSADLLYPGYGIAGHKGYPSPVHLEALSRLGATAIHRKTFGP 191 Query: 204 LRNL 207 +R + Sbjct: 192 VRKI 195 >gi|302187912|ref|ZP_07264585.1| ribonuclease HII [Pseudomonas syringae pv. syringae 642] Length = 218 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 88/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+LY +I A+ I Sbjct: 14 LVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLYVEIQEKALCWFI 73 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI AT+ A+ AVE L + P+ ALIDG P+ L + V+KGDS Sbjct: 74 ARAEVEEIDQLNILHATMLAMQRAVEGLSITPKLALIDGNRCPQ-LSVPSAPVVKGDSKV 132 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P Sbjct: 133 PAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 192 Query: 204 LR 205 +R Sbjct: 193 VR 194 >gi|323351561|ref|ZP_08087215.1| ribonuclease HII [Streptococcus sanguinis VMC66] gi|322122047|gb|EFX93773.1| ribonuclease HII [Streptococcus sanguinis VMC66] Length = 254 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 122/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+ Sbjct: 58 LRYEKELYKTGFRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A+ + I ++ ID+ NI++AT A+ A+ L + P LID + D+ Sbjct: 118 YQAVLDKALAVGIGLIDNEIIDQVNIYEATKLAMKDALSKLCLKPDYLLIDAMKL--DVE 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM KK+P Y F + GY T +H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMTDYDKKFPGYDFSQNAGYGTMRHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 NGVTPIHRKTFEPIKSM 252 >gi|24111618|ref|NP_706128.1| ribonuclease HII [Shigella flexneri 2a str. 301] gi|30061740|ref|NP_835911.1| ribonuclease HII [Shigella flexneri 2a str. 2457T] gi|82775573|ref|YP_401920.1| ribonuclease HII [Shigella dysenteriae Sd197] gi|110804235|ref|YP_687755.1| ribonuclease HII [Shigella flexneri 5 str. 8401] gi|309787143|ref|ZP_07681755.1| ribonuclease HII family protein [Shigella dysenteriae 1617] gi|39932374|sp|Q83MN1|RNH2_SHIFL RecName: Full=Ribonuclease HII; Short=RNase HII gi|97189271|sp|Q32JS6|RNH2_SHIDS RecName: Full=Ribonuclease HII; Short=RNase HII gi|123147263|sp|Q0T826|RNH2_SHIF8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|24050387|gb|AAN41835.1| RNAse HII [Shigella flexneri 2a str. 301] gi|30039982|gb|AAP15716.1| RNAse HII [Shigella flexneri 2a str. 2457T] gi|81239721|gb|ABB60431.1| RNAse HII [Shigella dysenteriae Sd197] gi|110613783|gb|ABF02450.1| RNAse HII [Shigella flexneri 5 str. 8401] gi|281599538|gb|ADA72522.1| Ribonuclease HII [Shigella flexneri 2002017] gi|308924721|gb|EFP70216.1| ribonuclease HII family protein [Shigella dysenteriae 1617] gi|313646756|gb|EFS11215.1| ribonuclease HII family protein [Shigella flexneri 2a str. 2457T] gi|332762020|gb|EGJ92291.1| ribonuclease HII family protein [Shigella flexneri 2747-71] gi|332762187|gb|EGJ92456.1| ribonuclease HII family protein [Shigella flexneri 4343-70] gi|332765032|gb|EGJ95260.1| ribonuclease HII family protein [Shigella flexneri K-671] gi|332768686|gb|EGJ98866.1| ribonuclease HII family protein [Shigella flexneri 2930-71] gi|333009387|gb|EGK28843.1| ribonuclease HII family protein [Shigella flexneri K-218] gi|333010678|gb|EGK30111.1| ribonuclease HII family protein [Shigella flexneri VA-6] gi|333022198|gb|EGK41437.1| ribonuclease HII family protein [Shigella flexneri K-304] Length = 198 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 89/184 (48%), Positives = 112/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LYE+I A+ S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ LP A AV+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|160880532|ref|YP_001559500.1| ribonuclease H [Clostridium phytofermentans ISDg] gi|189043586|sp|A9KLL7|RNH2_CLOPH RecName: Full=Ribonuclease HII; Short=RNase HII gi|160429198|gb|ABX42761.1| Ribonuclease H [Clostridium phytofermentans ISDg] Length = 254 Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 92/195 (47%), Positives = 126/195 (64%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + + + GIDEVGRG LAGPV+ A+IL + INDSK++S KKRE LY++ Sbjct: 61 EYELSYPDYRYICGIDEVGRGPLAGPVIACAVILPKDCEILYINDSKQLSEKKREALYDE 120 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI + I SASH I++ NI +AT +A+ A+ L V+P L D +IP+ + Sbjct: 121 IMEKAISVGIGSASHARIEEINILQATYEAMRGAINKLGVVPELLLNDAVTIPKVV-IPQ 179 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGD+ S+SIAAASI+AKVTRDRLM +P YGF S+ GY +A H + +KE GP Sbjct: 180 VPIIKGDAKSISIAAASIVAKVTRDRLMVEYDTVFPGYGFASNKGYGSADHIKALKELGP 239 Query: 194 SCIHRLTFRPLRNLS 208 S IHR +F ++NL+ Sbjct: 240 SPIHRASF--IKNLT 252 >gi|260583825|ref|ZP_05851573.1| ribonuclease HII [Granulicatella elegans ATCC 700633] gi|260158451|gb|EEW93519.1| ribonuclease HII [Granulicatella elegans ATCC 700633] Length = 257 Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 86/194 (44%), Positives = 118/194 (60%), Gaps = 3/194 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + ++ +AG+DEVGRG LAGPVV AA+IL N G +DSKK+S KREE+Y Sbjct: 63 YEILAYQEGASFIAGVDEVGRGPLAGPVVAAAVILPKNIEDLGFDDSKKLSASKREEIYR 122 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI I I ID+ NI++A+ A+ AV L++ P LID I D+ Sbjct: 123 LIQEKAIAIGIGIVDADIIDQVNIYQASRLAMQQAVSELKIQPDYLLIDAMKI--DVNTP 180 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +IKGD+ S+SIAAASI+AK RD++M+ + YP Y F ++ GY T KH + +K KG Sbjct: 181 QIGIIKGDAKSISIAAASIVAKQVRDQMMQEFDELYPGYDFSNNAGYGTPKHLEGLKSKG 240 Query: 193 PSCIHRLTFRPLRN 206 IHR TF P+++ Sbjct: 241 ICPIHRKTFAPIKD 254 >gi|157147385|ref|YP_001454704.1| ribonuclease HII [Citrobacter koseri ATCC BAA-895] gi|166225182|sp|A8ALA5|RNH2_CITK8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|157084590|gb|ABV14268.1| hypothetical protein CKO_03183 [Citrobacter koseri ATCC BAA-895] Length = 198 Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 88/184 (47%), Positives = 110/184 (59%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LY++I A+ S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALYDEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P LP + AV+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPA-LPVPSMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASIIAKVTRD M +P YGF H GYPTA H + E G + HR +F Sbjct: 129 VAEISAASIIAKVTRDAEMAALDGIFPQYGFAQHKGYPTAFHLAALAEHGATEHHRRSFA 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|325278078|ref|ZP_08143597.1| ribonuclease HII [Pseudomonas sp. TJI-51] gi|324096785|gb|EGB95112.1| ribonuclease HII [Pseudomonas sp. TJI-51] Length = 207 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 90/182 (49%), Positives = 116/182 (63%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ KRE L+++I A+ I Sbjct: 13 LVAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTQAKREALFDEICEKALSFCI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI +AT+ A+ AVE L V P+ ALIDG P+ L A V+KGDS Sbjct: 73 ARAEVEEIDRLNILQATMLAMQRAVEGLHVTPKLALIDGNRCPK-LSVPAAPVVKGDSQV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P Sbjct: 132 PAIAAASILAKVSRDREMSAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 191 Query: 204 LR 205 +R Sbjct: 192 VR 193 >gi|227529208|ref|ZP_03959257.1| ribonuclease H [Lactobacillus vaginalis ATCC 49540] gi|227350883|gb|EEJ41174.1| ribonuclease H [Lactobacillus vaginalis ATCC 49540] Length = 260 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 82/195 (42%), Positives = 117/195 (60%), Gaps = 2/195 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F+ E ++ VAG+DEVGRG LAGPVV A+IL P G+ DSK+++ +RE Sbjct: 62 RFKFEKQYWQQGCQYVAGMDEVGRGPLAGPVVTCAVILSPEFDLIGVTDSKQLTRHEREN 121 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY +I + AI +SI+ Q ID+ NI+ AT +A+ +V L P S ++D +P L Sbjct: 122 LYLQIVNEAIEVSIAVNDSQKIDQLNIYAATQNAMMTSVRQLHHQPESLIVDAVPLPA-L 180 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +IKGD S+S+AAASI+AK RD LMR + YP Y F ++GY T KH ++ Sbjct: 181 DIPQTTLIKGDQKSISVAAASIVAKEYRDHLMRDYDRIYPGYDFAENMGYGTKKHLAGLR 240 Query: 190 EKGPSCIHRLTFRPL 204 + G + IHR +F P+ Sbjct: 241 KLGATPIHRRSFNPV 255 >gi|157372011|ref|YP_001480000.1| ribonuclease HII [Serratia proteamaculans 568] gi|166991070|sp|A8GID2|RNH2_SERP5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|157323775|gb|ABV42872.1| Ribonuclease H [Serratia proteamaculans 568] Length = 197 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 116/184 (63%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A+ S+ Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVILDPARPIVGLADSKKLSEKRRLALYDEIVEKALSWSL 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L + P LIDG P+ LP ++ AV+KGDS Sbjct: 72 GRAEPDEIDQLNILHATMLAMQRAVAGLHIAPDMVLIDGNRCPK-LPMRSQAVVKGDSRV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M +++PDYGF H GYPTA H + + G + HR +F P Sbjct: 131 AEISAASILAKVTRDREMTELDREFPDYGFAQHKGYPTAFHLERLAALGATEHHRRSFAP 190 Query: 204 LRNL 207 +R + Sbjct: 191 VRRV 194 >gi|28868754|ref|NP_791373.1| ribonuclease HII [Pseudomonas syringae pv. tomato str. DC3000] gi|213969132|ref|ZP_03397271.1| ribonuclease HII [Pseudomonas syringae pv. tomato T1] gi|301383973|ref|ZP_07232391.1| ribonuclease HII [Pseudomonas syringae pv. tomato Max13] gi|302064141|ref|ZP_07255682.1| ribonuclease HII [Pseudomonas syringae pv. tomato K40] gi|302134068|ref|ZP_07260058.1| ribonuclease HII [Pseudomonas syringae pv. tomato NCPPB 1108] gi|37999586|sp|Q886M9|RNH2_PSESM RecName: Full=Ribonuclease HII; Short=RNase HII gi|28851993|gb|AAO55068.1| ribonuclease HII [Pseudomonas syringae pv. tomato str. DC3000] gi|213926130|gb|EEB59686.1| ribonuclease HII [Pseudomonas syringae pv. tomato T1] gi|331016381|gb|EGH96437.1| ribonuclease HII [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 217 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 88/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ KRE+L+ +I A+ I Sbjct: 13 LVAGVDEVGRGPLCGAVVTAAVILDPAKPILGLNDSKKLTEAKREKLFVEIQEKALCWFI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI AT+ A+ AVE L + P+ ALIDG P+ L + V+KGDS Sbjct: 73 ARAEVEEIDQLNILHATMLAMKRAVEGLSITPKLALIDGNRCPQ-LSVPSAPVVKGDSKV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P Sbjct: 132 PAIAAASILAKVSRDREMAALELIYPGYGIAGHKGYPTPVHLEALARLGPTPIHRRSFGP 191 Query: 204 LR 205 +R Sbjct: 192 VR 193 >gi|16128176|ref|NP_414725.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli str. K-12 substr. MG1655] gi|74310803|ref|YP_309222.1| ribonuclease HII [Shigella sonnei Ss046] gi|89107063|ref|AP_000843.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli str. K-12 substr. W3110] gi|157157454|ref|YP_001461352.1| ribonuclease HII [Escherichia coli E24377A] gi|157159648|ref|YP_001456966.1| ribonuclease HII [Escherichia coli HS] gi|170079819|ref|YP_001729139.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli str. K-12 substr. DH10B] gi|188492814|ref|ZP_03000084.1| ribonuclease HII [Escherichia coli 53638] gi|191167029|ref|ZP_03028851.1| ribonuclease HII [Escherichia coli B7A] gi|193063198|ref|ZP_03044289.1| ribonuclease HII [Escherichia coli E22] gi|193067763|ref|ZP_03048730.1| ribonuclease HII [Escherichia coli E110019] gi|194428257|ref|ZP_03060799.1| ribonuclease HII [Escherichia coli B171] gi|209917373|ref|YP_002291457.1| ribonuclease HII [Escherichia coli SE11] gi|218552764|ref|YP_002385677.1| ribonuclease HII [Escherichia coli IAI1] gi|218693648|ref|YP_002401315.1| ribonuclease HII [Escherichia coli 55989] gi|238899581|ref|YP_002925377.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli BW2952] gi|254037602|ref|ZP_04871679.1| ribonuclease HII [Escherichia sp. 1_1_43] gi|256021615|ref|ZP_05435480.1| ribonuclease HII [Shigella sp. D9] gi|256025495|ref|ZP_05439360.1| ribonuclease HII [Escherichia sp. 4_1_40B] gi|260842415|ref|YP_003220193.1| ribonuclease HII [Escherichia coli O103:H2 str. 12009] gi|260853393|ref|YP_003227284.1| ribonuclease HII [Escherichia coli O26:H11 str. 11368] gi|260866332|ref|YP_003232734.1| ribonuclease HII [Escherichia coli O111:H- str. 11128] gi|293476840|ref|ZP_06665248.1| ribonuclease HII [Escherichia coli B088] gi|300816223|ref|ZP_07096446.1| ribonuclease HII [Escherichia coli MS 107-1] gi|300824094|ref|ZP_07104214.1| ribonuclease HII [Escherichia coli MS 119-7] gi|300923025|ref|ZP_07139092.1| ribonuclease HII [Escherichia coli MS 182-1] gi|300949785|ref|ZP_07163759.1| ribonuclease HII [Escherichia coli MS 116-1] gi|300956066|ref|ZP_07168391.1| ribonuclease HII [Escherichia coli MS 175-1] gi|301028676|ref|ZP_07191897.1| ribonuclease HII [Escherichia coli MS 196-1] gi|301330019|ref|ZP_07222703.1| ribonuclease HII [Escherichia coli MS 78-1] gi|301646506|ref|ZP_07246381.1| ribonuclease HII [Escherichia coli MS 146-1] gi|307136783|ref|ZP_07496139.1| ribonuclease HII [Escherichia coli H736] gi|307311369|ref|ZP_07591011.1| Ribonuclease H [Escherichia coli W] gi|331640637|ref|ZP_08341785.1| ribonuclease HII [Escherichia coli H736] gi|331666424|ref|ZP_08367305.1| ribonuclease HII [Escherichia coli TA271] gi|331680762|ref|ZP_08381421.1| ribonuclease HII [Escherichia coli H591] gi|332282857|ref|ZP_08395270.1| ribonuclease HII degrades RNA of DNA-RNA hybrids [Shigella sp. D9] gi|2507334|sp|P10442|RNH2_ECOLI RecName: Full=Ribonuclease HII; Short=RNase HII gi|97189278|sp|Q3Z5H5|RNH2_SHISS RecName: Full=Ribonuclease HII; Short=RNase HII gi|166991065|sp|A7ZHS3|RNH2_ECO24 RecName: Full=Ribonuclease HII; Short=RNase HII gi|166991066|sp|A7ZWC9|RNH2_ECOHS RecName: Full=Ribonuclease HII; Short=RNase HII gi|226736819|sp|B7M1Y6|RNH2_ECO8A RecName: Full=Ribonuclease HII; Short=RNase HII gi|229564284|sp|B1XD52|RNH2_ECODH RecName: Full=Ribonuclease HII; Short=RNase HII gi|238056777|sp|B6HZF7|RNH2_ECOSE RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807975|sp|B7LGP5|RNH2_ECO55 RecName: Full=Ribonuclease HII; Short=RNase HII gi|259494063|sp|C4ZRS5|RNH2_ECOBW RecName: Full=Ribonuclease HII; Short=RNase HII gi|1552760|gb|AAB08612.1| ribonuclease HII [Escherichia coli] gi|1786380|gb|AAC73294.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli str. K-12 substr. MG1655] gi|73854280|gb|AAZ86987.1| RNAse HII [Shigella sonnei Ss046] gi|85674372|dbj|BAA77858.2| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli str. K12 substr. W3110] gi|157065328|gb|ABV04583.1| ribonuclease HII [Escherichia coli HS] gi|157079484|gb|ABV19192.1| ribonuclease HII [Escherichia coli E24377A] gi|169887654|gb|ACB01361.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli str. K-12 substr. DH10B] gi|188488013|gb|EDU63116.1| ribonuclease HII [Escherichia coli 53638] gi|190902922|gb|EDV62649.1| ribonuclease HII [Escherichia coli B7A] gi|192931106|gb|EDV83709.1| ribonuclease HII [Escherichia coli E22] gi|192959175|gb|EDV89611.1| ribonuclease HII [Escherichia coli E110019] gi|194413632|gb|EDX29912.1| ribonuclease HII [Escherichia coli B171] gi|209910632|dbj|BAG75706.1| ribonuclease HII [Escherichia coli SE11] gi|218350380|emb|CAU96063.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli 55989] gi|218359532|emb|CAQ97070.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli IAI1] gi|226840708|gb|EEH72710.1| ribonuclease HII [Escherichia sp. 1_1_43] gi|238863470|gb|ACR65468.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli BW2952] gi|257752042|dbj|BAI23544.1| ribonuclease HII [Escherichia coli O26:H11 str. 11368] gi|257757562|dbj|BAI29059.1| ribonuclease HII [Escherichia coli O103:H2 str. 12009] gi|257762688|dbj|BAI34183.1| ribonuclease HII [Escherichia coli O111:H- str. 11128] gi|260450614|gb|ACX41036.1| Ribonuclease H [Escherichia coli DH1] gi|291321293|gb|EFE60735.1| ribonuclease HII [Escherichia coli B088] gi|299878308|gb|EFI86519.1| ribonuclease HII [Escherichia coli MS 196-1] gi|300317096|gb|EFJ66880.1| ribonuclease HII [Escherichia coli MS 175-1] gi|300420652|gb|EFK03963.1| ribonuclease HII [Escherichia coli MS 182-1] gi|300450817|gb|EFK14437.1| ribonuclease HII [Escherichia coli MS 116-1] gi|300523371|gb|EFK44440.1| ribonuclease HII [Escherichia coli MS 119-7] gi|300531430|gb|EFK52492.1| ribonuclease HII [Escherichia coli MS 107-1] gi|300843930|gb|EFK71690.1| ribonuclease HII [Escherichia coli MS 78-1] gi|301075292|gb|EFK90098.1| ribonuclease HII [Escherichia coli MS 146-1] gi|306908348|gb|EFN38846.1| Ribonuclease H [Escherichia coli W] gi|315059401|gb|ADT73728.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli W] gi|315134873|dbj|BAJ42032.1| ribonuclease HII [Escherichia coli DH1] gi|315616332|gb|EFU96950.1| ribonuclease HII family protein [Escherichia coli 3431] gi|320200291|gb|EFW74877.1| Ribonuclease HII [Escherichia coli EC4100B] gi|323157980|gb|EFZ44082.1| ribonuclease HII family protein [Escherichia coli EPECa14] gi|323160197|gb|EFZ46156.1| ribonuclease HII family protein [Escherichia coli E128010] gi|323165884|gb|EFZ51666.1| ribonuclease HII family protein [Shigella sonnei 53G] gi|323170975|gb|EFZ56624.1| ribonuclease HII family protein [Escherichia coli LT-68] gi|323176498|gb|EFZ62090.1| ribonuclease HII family protein [Escherichia coli 1180] gi|323181691|gb|EFZ67105.1| ribonuclease HII family protein [Escherichia coli 1357] gi|323380040|gb|ADX52308.1| Ribonuclease H [Escherichia coli KO11] gi|323939941|gb|EGB36139.1| ribonuclease HII [Escherichia coli E482] gi|323945660|gb|EGB41709.1| ribonuclease HII [Escherichia coli H120] gi|323970662|gb|EGB65918.1| ribonuclease HII [Escherichia coli TA007] gi|324017810|gb|EGB87029.1| ribonuclease HII [Escherichia coli MS 117-3] gi|324118303|gb|EGC12198.1| ribonuclease HII [Escherichia coli E1167] gi|331040383|gb|EGI12590.1| ribonuclease HII [Escherichia coli H736] gi|331066635|gb|EGI38512.1| ribonuclease HII [Escherichia coli TA271] gi|331072225|gb|EGI43561.1| ribonuclease HII [Escherichia coli H591] gi|332105209|gb|EGJ08555.1| ribonuclease HII degrades RNA of DNA-RNA hybrids [Shigella sp. D9] gi|332341516|gb|AEE54850.1| ribonuclease HII RnhB [Escherichia coli UMNK88] Length = 198 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 89/184 (48%), Positives = 112/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LYE+I A+ S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ LP A AV+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|238853072|ref|ZP_04643464.1| ribonuclease HII [Lactobacillus gasseri 202-4] gi|238834320|gb|EEQ26565.1| ribonuclease HII [Lactobacillus gasseri 202-4] Length = 250 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 89/197 (45%), Positives = 128/197 (64%), Gaps = 4/197 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E +K+ VAG+DEVGRG LAGPVV AA+IL N +NDSKK+S KKR+E Sbjct: 54 RFSYEKKFGQKS-QLVAGVDEVGRGPLAGPVVTAAVILPHNFDLIDVNDSKKLSPKKRKE 112 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ KI + A+ +S+ A++ ID+ NI++A A+ HAV+ L+V P + L+D ++P ++ Sbjct: 113 LFPKILAKAVSVSVGLANNDVIDRINIYEADRLAMAHAVQGLKVKPDALLVDAMNVPLNI 172 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +I GD+ S SIAAASI+AKV RD LM + YP+Y F + GY T +H + +K Sbjct: 173 P--QVKLIHGDAKSNSIAAASIVAKVFRDNLMDAYGEVYPEYDFKHNAGYGTREHMEALK 230 Query: 190 EKGPSCIHRLTFRPLRN 206 + GP+ IHR +F P+ Sbjct: 231 KYGPTPIHRRSFAPVSE 247 >gi|293408275|ref|ZP_06652115.1| ribonuclease HII [Escherichia coli B354] gi|331671689|ref|ZP_08372487.1| ribonuclease HII [Escherichia coli TA280] gi|291472526|gb|EFF15008.1| ribonuclease HII [Escherichia coli B354] gi|331071534|gb|EGI42891.1| ribonuclease HII [Escherichia coli TA280] Length = 198 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 112/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG L G VV AA+ILDP+ G+NDSKK+S K+R L E+I A+ S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPSRPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ LP + AV+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|121601736|ref|YP_988707.1| ribonuclease HII [Bartonella bacilliformis KC583] gi|166225170|sp|A1URV4|RNH2_BARBK RecName: Full=Ribonuclease HII; Short=RNase HII gi|120613913|gb|ABM44514.1| ribonuclease HII [Bartonella bacilliformis KC583] Length = 222 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 100/208 (48%), Positives = 137/208 (65%), Gaps = 2/208 (0%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 + + +P +P+F E ++ + + +AG+DEVGRG LAGPVV AA+IL ++ G+NDS Sbjct: 9 LNMSDLPPQPNFSYELDLQNQGFFHIAGVDEVGRGPLAGPVVTAAVILSKDHSLDGLNDS 68 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK+S +KR LY +I SA+ ISI+S + ID+ +I KATL+A+ V L V AL Sbjct: 69 KKLSVQKRNRLYCEILQSALAISIASICARAIDQSDIRKATLEAMRRCVMGLAVPAHYAL 128 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 IDGR IP LPC A A++KGD S+SIAAASI+AKVTRDR+M A + Y YG + HVGY Sbjct: 129 IDGRDIPPHLPCPAKALVKGDQRSVSIAAASIVAKVTRDRMMEHAGQVYQGYGLEKHVGY 188 Query: 180 PTAKHQQVIKEKGP-SCIHRLTFRPLRN 206 T H+ I E GP +HR +F ++ Sbjct: 189 ATVAHRAAIAEYGPVIGLHRYSFALIKR 216 >gi|312134790|ref|YP_004002128.1| ribonuclease h [Caldicellulosiruptor owensensis OL] gi|311774841|gb|ADQ04328.1| Ribonuclease H [Caldicellulosiruptor owensensis OL] Length = 206 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 128/197 (64%), Gaps = 4/197 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE+E + + + G+DE GRG LAGPV AA+++D I G+ DSKK++ KKRE+L Sbjct: 10 FEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREKL 69 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +E+I +I S++ + ID+ NI+ AT A+ +A+ENL++ P L+DG IP +L Sbjct: 70 FEEIIKESIAYSVAMVDSKIIDEININNATFSAMKNAIENLKIEPDIVLVDGYEIP-NLN 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD S SIA ASI+AKV+RDR + KYP Y F+ H GY T +H +++++ Sbjct: 129 FNQRAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPLYKFEKHKGYGTKEHIEILRK 188 Query: 191 KGPSCIHRLTFRPLRNL 207 GP IHR++F L+N+ Sbjct: 189 YGPCEIHRISF--LKNI 203 >gi|240850070|ref|YP_002971463.1| ribonuclease HII [Bartonella grahamii as4aup] gi|240267193|gb|ACS50781.1| ribonuclease HII [Bartonella grahamii as4aup] Length = 224 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 98/208 (47%), Positives = 139/208 (66%), Gaps = 4/208 (1%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 MF ++P +P+F E ++++ + +AG+DEVGRG LAGPVV AA+ILD ++IP +NDS Sbjct: 12 MF--NVPLQPNFSCELDLQKQGFFHIAGVDEVGRGPLAGPVVTAAVILDKDHIPNELNDS 69 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK+S +R LY +I SA+ +S++S + ID+ NI KATL+A+ + L + L Sbjct: 70 KKLSFLQRNRLYHEILQSALAVSVASLCARTIDQSNIRKATLEAMRRCIIGLAIPAHYVL 129 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 +DGR IP +L C A A+IKGD S+SIAAASIIAKVTRDR+M + Y YG + HVGY Sbjct: 130 VDGRDIPSELSCPAMALIKGDQRSVSIAAASIIAKVTRDRMMECVGQVYKGYGLEKHVGY 189 Query: 180 PTAKHQQVIKEKGPSC-IHRLTFRPLRN 206 T H+ + + GP +HR +F PL+ Sbjct: 190 ATLAHRTALDKYGPIIGLHRYSFAPLKE 217 >gi|85059907|ref|YP_455609.1| ribonuclease HII [Sodalis glossinidius str. 'morsitans'] gi|97189300|sp|Q2NRM1|RNH2_SODGM RecName: Full=Ribonuclease HII; Short=RNase HII gi|84780427|dbj|BAE75204.1| ribonuclease HII [Sodalis glossinidius str. 'morsitans'] Length = 198 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 91/184 (49%), Positives = 118/184 (64%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+RE LYE+IT A+ S+ Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVILDPARPVLGLADSKKLSEKRREALYEEITRYALAWSV 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID NI++ATL A+ AV L V+P L+DG P LP + A++KGDS Sbjct: 72 GRAEASEIDSINIYQATLLAMQRAVAALAVVPDFVLVDGNRCPL-LPMPSQAIVKGDSRV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASIIAKVTRDR M H ++P+YGF H GYPTA H + + G + HR +F P Sbjct: 131 AEISAASIIAKVTRDREMAALHLQFPEYGFAQHKGYPTAFHLEKLALHGATVHHRRSFAP 190 Query: 204 LRNL 207 +R + Sbjct: 191 VRRV 194 >gi|251790731|ref|YP_003005452.1| ribonuclease HII [Dickeya zeae Ech1591] gi|247539352|gb|ACT07973.1| Ribonuclease H [Dickeya zeae Ech1591] Length = 198 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 86/184 (46%), Positives = 114/184 (61%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DEVGRG L G VV AA+ILDPN G+ DSK +S K+R LY++I A+ S Sbjct: 11 RCIAGVDEVGRGPLVGAVVTAAVILDPNRPIVGLADSKTLSEKRRLALYDEIREKALAWS 70 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID NI AT+ A+ AV L V P LIDG P LP + AV+KGDS Sbjct: 71 LGRAEPEEIDTLNILHATMLAMQRAVAALPVTPDFVLIDGNRCPA-LPMPSQAVVKGDSR 129 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M + +++P+YGF H GYPTA H + + G + HR +F Sbjct: 130 VAEISAASILAKVTRDREMEVLDRQFPEYGFAQHKGYPTAYHLEKLATLGATLHHRRSFA 189 Query: 203 PLRN 206 P++ Sbjct: 190 PVKR 193 >gi|301025937|ref|ZP_07189421.1| ribonuclease HII [Escherichia coli MS 69-1] gi|300395736|gb|EFJ79274.1| ribonuclease HII [Escherichia coli MS 69-1] Length = 198 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 112/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG L G VV AA+ILDP+ G+NDSKK+S K+R L E+I A+ S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPSRPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ LP + AV+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|190571269|ref|YP_001975627.1| ribonuclease HII [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018665|ref|ZP_03334473.1| ribonuclease HII [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|238056783|sp|B3CM59|RNH2_WOLPP RecName: Full=Ribonuclease HII; Short=RNase HII gi|190357541|emb|CAQ54978.1| ribonuclease HII [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995616|gb|EEB56256.1| ribonuclease HII [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 197 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 91/199 (45%), Positives = 123/199 (61%), Gaps = 6/199 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKR 68 P F LE + +AG+DEVGRG LAGPV+ AA+I D + + GINDSKK++ K R Sbjct: 4 PDFSLENTLS----GIIAGVDEVGRGPLAGPVISAAVIFTDRDTVIDGINDSKKLTPKCR 59 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + LYEKITS A I AS + I+ +NI +AT ++ A+ NL + L+DG PE Sbjct: 60 QVLYEKITSVAKFGIGMASVEEINSYNILQATKLSMKRALANLNLELDYVLVDGNQPPE- 118 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + Q +++ GDS+S+SIAAASI+AKVTRDRLM H K+P Y + + GY T +H I Sbjct: 119 VKWQVKSIVNGDSLSISIAAASIVAKVTRDRLMEELHNKHPQYNWYKNKGYGTKEHLSAI 178 Query: 189 KEKGPSCIHRLTFRPLRNL 207 G + HR F P+R L Sbjct: 179 GLHGITKHHRKNFAPIRIL 197 >gi|330872713|gb|EGH06862.1| ribonuclease HII [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 217 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 89/182 (48%), Positives = 116/182 (63%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP FG+NDSKK++ KRE+L+ +I A+ I Sbjct: 13 LVAGVDEVGRGPLCGAVVTAAVILDPARPIFGLNDSKKLTEAKREKLFVEIQEKALCWFI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI AT+ A+ AVE L + P+ ALIDG P+ L + V+KGDS Sbjct: 73 ARAEVEEIDQLNILHATMLAMKRAVEGLNITPKLALIDGNRCPQ-LSVPSAPVVKGDSKV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P Sbjct: 132 PAIAAASILAKVSRDREMAALELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFGP 191 Query: 204 LR 205 +R Sbjct: 192 VR 193 >gi|295692915|ref|YP_003601525.1| ribonuclease hii [Lactobacillus crispatus ST1] gi|295031021|emb|CBL50500.1| Ribonuclease HII [Lactobacillus crispatus ST1] Length = 250 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 90/198 (45%), Positives = 124/198 (62%), Gaps = 4/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E EK VAG+DEVGRG LAGPVV AA+I+D + +NDSKK+S +KR + Sbjct: 54 RFSYEKKFWEKG-QLVAGVDEVGRGPLAGPVVTAAVIIDQDFDLLDVNDSKKLSPEKRLK 112 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY KI + A+ + I S + ID+ NI++A A+ AV L V P + L+D ++P +L Sbjct: 113 LYPKILAEAVSVGIGVKSAEVIDQINIYEADRQAMAQAVRALDVKPNALLVDAMNVPVNL 172 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +IKGD+ S SIAAASI+AKV RD+LM + YP Y F + GY T +H + +K Sbjct: 173 P--QVKLIKGDAKSNSIAAASIVAKVFRDQLMDDYDRIYPQYCFHHNAGYGTKEHIEALK 230 Query: 190 EKGPSCIHRLTFRPLRNL 207 + GP+ IHR TF P+ + Sbjct: 231 KYGPTLIHRKTFAPVSDF 248 >gi|163867862|ref|YP_001609066.1| ribonuclease HII [Bartonella tribocorum CIP 105476] gi|189043567|sp|A9IQL1|RNH2_BART1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|161017513|emb|CAK01071.1| Ribonuclease HII [Bartonella tribocorum CIP 105476] Length = 224 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 102/204 (50%), Positives = 139/204 (68%), Gaps = 2/204 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 S+ +P+F E ++++ + VAG+DEVGRG LAGPVV AA+ILD + IP G+NDSKK+S Sbjct: 14 SLSFQPNFLCELGLQKQGFFHVAGVDEVGRGPLAGPVVTAAVILDKDRIPDGLNDSKKLS 73 Query: 65 HKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +R LY +I SA+ SI+S + ID+ NI KATL+A+ + L V L+DGR Sbjct: 74 FLQRNRLYHEILQSALAASIASLCARTIDQSNIRKATLEAMRRCIIGLAVPAHYVLVDGR 133 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 IP +LPC A A+IKGD S+SIAAASIIAKVTRDR+M A + Y +YG + HVGY T Sbjct: 134 DIPSELPCPAMALIKGDQRSVSIAAASIIAKVTRDRMMECAGQVYTNYGLEKHVGYATLA 193 Query: 184 HQQVIKEKGPSC-IHRLTFRPLRN 206 H++ + + GP +HR +F PL+ Sbjct: 194 HRRALDKYGPIVGLHRYSFAPLKE 217 >gi|270264806|ref|ZP_06193070.1| ribonuclease HII [Serratia odorifera 4Rx13] gi|270041104|gb|EFA14204.1| ribonuclease HII [Serratia odorifera 4Rx13] Length = 197 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 87/183 (47%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A+ S+ Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVILDPARPIIGLADSKKLSEKRRLALYDEIVEKALSWSL 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L + P LIDG P+ LP ++ AV+KGDS Sbjct: 72 GRAEPEEIDRLNILHATMLAMQRAVAGLHIAPDMVLIDGNRCPK-LPMRSQAVVKGDSRV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M +++PDYGF H GYPTA H + + G + HR +F P Sbjct: 131 AEISAASILAKVTRDREMTELDREFPDYGFAQHKGYPTAFHLERLAVLGATEHHRRSFAP 190 Query: 204 LRN 206 +R Sbjct: 191 VRR 193 >gi|323964924|gb|EGB60390.1| ribonuclease HII [Escherichia coli M863] gi|327255162|gb|EGE66765.1| ribonuclease HII family protein [Escherichia coli STEC_7v] Length = 198 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPTRPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ LP + AV+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|237745609|ref|ZP_04576089.1| ribonuclease HII [Oxalobacter formigenes HOxBLS] gi|229376960|gb|EEO27051.1| ribonuclease HII [Oxalobacter formigenes HOxBLS] Length = 218 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 86/184 (46%), Positives = 118/184 (64%), Gaps = 1/184 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + G DE GRG +AGPV AA+ILDP+ G+ DSKK+S +R+EL +I A SI Sbjct: 27 LICGADEAGRGPIAGPVFAAAVILDPDRPVNGLRDSKKLSESRRDELALEIKKKAKAWSI 86 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S ID+ NI A++ A+ A+E L V+P AL+DG P DL +A A++KGD Sbjct: 87 AQCSVAEIDELNILWASMLAMKRAIETLSVLPELALVDGNRYPRDLSVRAEAIVKGDDRV 146 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AK RD +MR H++YP YGFD H GYPTA H +K+ G S +HR T+ P Sbjct: 147 PAISAASILAKTARDAVMRELHRQYPAYGFDRHKGYPTAFHLAQLKKYGVSPVHRRTYAP 206 Query: 204 LRNL 207 +R + Sbjct: 207 VRKI 210 >gi|238855692|ref|ZP_04645989.1| ribonuclease HII [Lactobacillus jensenii 269-3] gi|260664447|ref|ZP_05865299.1| ribonuclease HII [Lactobacillus jensenii SJ-7A-US] gi|282932206|ref|ZP_06337653.1| ribonuclease HII [Lactobacillus jensenii 208-1] gi|313472152|ref|ZP_07812644.1| ribonuclease HII [Lactobacillus jensenii 1153] gi|238831677|gb|EEQ24017.1| ribonuclease HII [Lactobacillus jensenii 269-3] gi|239529524|gb|EEQ68525.1| ribonuclease HII [Lactobacillus jensenii 1153] gi|260561512|gb|EEX27484.1| ribonuclease HII [Lactobacillus jensenii SJ-7A-US] gi|281303656|gb|EFA95811.1| ribonuclease HII [Lactobacillus jensenii 208-1] Length = 252 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 92/197 (46%), Positives = 120/197 (60%), Gaps = 4/197 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F+ E VAG+DEVGRG LAGPVV AA++LD + +NDSKK+S KKR E Sbjct: 54 RFQYEQKAWAAG-SIVAGVDEVGRGPLAGPVVTAAVVLDDSFDLVEVNDSKKLSPKKRLE 112 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY +I A+ + I S + IDK NI++A A+ AV NL + P L+D ++P D+ Sbjct: 113 LYPRILDKAVAVGIGVGSPELIDKINIYEADRVAMAQAVNNLALRPDLLLVDAMNVPVDI 172 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + +IKGDS S SIAAASI+AKV RD LM K YP Y F+ + GY TAKH +K Sbjct: 173 --KQIELIKGDSKSNSIAAASIVAKVFRDELMNDYAKVYPQYDFEHNAGYGTAKHLAALK 230 Query: 190 EKGPSCIHRLTFRPLRN 206 E G + IHR +F P+ Sbjct: 231 EFGATPIHRRSFSPVSE 247 >gi|15615038|ref|NP_243341.1| ribonuclease H [Bacillus halodurans C-125] gi|10720371|sp|Q9Z9S0|RNH2_BACHD RecName: Full=Ribonuclease HII; Short=RNase HII gi|10175095|dbj|BAB06194.1| ribonuclease H [Bacillus halodurans C-125] Length = 263 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 84/202 (41%), Positives = 122/202 (60%), Gaps = 3/202 (1%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + E + K VAG+DEVGRG LAGPVV AA+IL + G+ DSKK++ Sbjct: 56 MEHEEMLAYEKDLWAKGYEHVAGLDEVGRGPLAGPVVTAAVILPKDVQLPGLTDSKKLAK 115 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 + RE Y++I A+ S++ ID+ NI++AT + A++ L V P + L+D + Sbjct: 116 ETRESFYDRIKEVALAWSVAIVPVTVIDEVNIYQATKQGMMSAIDQLSVNPDALLLDAMN 175 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P LP Q+ +IKGD SLSIAA+S++AKVTRDR M +YP+YGF+ HVGY T +H Sbjct: 176 LPLSLPQQS--LIKGDQKSLSIAASSVLAKVTRDRYMADLANRYPEYGFERHVGYGTEEH 233 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 + G + HR +FRP++ Sbjct: 234 LAALNAHGITPEHRRSFRPVQE 255 >gi|330964157|gb|EGH64417.1| ribonuclease HII [Pseudomonas syringae pv. actinidiae str. M302091] Length = 217 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 88/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ KRE+L+ +I A+ I Sbjct: 13 LVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEAKREKLFVEIQEKALCWFI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI AT+ A+ AVE L + P+ ALIDG P+ L + V+KGDS Sbjct: 73 ARAEVEEIDQLNILHATMLAMKRAVEGLNITPKLALIDGNRCPQ-LSVPSAPVVKGDSKV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P Sbjct: 132 PAIAAASILAKVSRDREMAALELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFGP 191 Query: 204 LR 205 +R Sbjct: 192 VR 193 >gi|320546752|ref|ZP_08041063.1| ribonuclease HII [Streptococcus equinus ATCC 9812] gi|320448631|gb|EFW89363.1| ribonuclease HII [Streptococcus equinus ATCC 9812] Length = 259 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 86/200 (43%), Positives = 122/200 (61%), Gaps = 6/200 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + GIDEVGRG LAGPVV A +IL N +NDSKKI K EE+ Sbjct: 58 LRYEKELYKQGYQAIGGIDEVGRGPLAGPVVTACVILPKNCKIKHLNDSKKIPKKHHEEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127 YE++ + A+ + I + ID NI++AT + A+E L+ P LID + Sbjct: 118 YEEVLARALGVGIGVIDNNVIDDINIYEATKVGMLQAIEQLKGEVTRPDYLLIDAMHLDT 177 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D+P ++IKGD+ SLSIAAASI+AKVTRDR+M K+YP Y F+ +VGY T H + Sbjct: 178 DIP--QESLIKGDANSLSIAAASIVAKVTRDRMMADYAKEYPGYAFEKNVGYGTKDHLEG 235 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 +K+ G + IHR TF P++++ Sbjct: 236 LKKLGITPIHRKTFEPIKSM 255 >gi|309796360|ref|ZP_07690769.1| ribonuclease HII [Escherichia coli MS 145-7] gi|308120064|gb|EFO57326.1| ribonuclease HII [Escherichia coli MS 145-7] Length = 198 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 89/184 (48%), Positives = 112/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LYE+I A+ S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ LP A AV+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAELHIAPEYVLIDGNRCPK-LPMPAMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|225077059|ref|ZP_03720258.1| hypothetical protein NEIFLAOT_02112 [Neisseria flavescens NRL30031/H210] gi|224951616|gb|EEG32825.1| hypothetical protein NEIFLAOT_02112 [Neisseria flavescens NRL30031/H210] Length = 230 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 84/182 (46%), Positives = 108/182 (59%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL + G+ DSKK+S KKR+ L + I A+ SI+ Sbjct: 40 AGVDEAGRGPLVGSVFAAAVILPEHFDLPGLTDSKKLSEKKRDMLAQMIKEQAVAWSIAF 99 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A I K NI AT+ A+ AVE L V P IDG +P+DL A AV+KGDS + Sbjct: 100 ADPDEILKLNILHATMAAMKRAVEGLSVAPDKVWIDGNRVPKDLNVPAEAVVKGDSKIIE 159 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M K+YP YGFD H GY TA+H +K+ G HR F P++ Sbjct: 160 ISAASVLAKTARDAEMYELAKRYPQYGFDRHKGYGTAQHLAALKQYGVLLEHRRDFAPVK 219 Query: 206 NL 207 L Sbjct: 220 TL 221 >gi|148265777|ref|YP_001232483.1| ribonuclease HII [Geobacter uraniireducens Rf4] gi|189043599|sp|A5G7Z2|RNH2_GEOUR RecName: Full=Ribonuclease HII; Short=RNase HII gi|146399277|gb|ABQ27910.1| RNase HII [Geobacter uraniireducens Rf4] Length = 216 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 98/202 (48%), Positives = 123/202 (60%), Gaps = 3/202 (1%) Query: 7 PERPHF-ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 ERP E E++VR + +AGIDE GRG LAGPVV AA+IL G+NDSKK+S Sbjct: 10 EERPSLLEFESLVRRQGYACIAGIDEAGRGPLAGPVVAAAVILPNGVELPGVNDSKKLSP 69 Query: 66 KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KR EL++ I +SA + + S+ ID+ NI +ATL A+ AV L + P LIDG S Sbjct: 70 VKRNELFDLIMASASAVGVGSSDAGLIDEINILQATLAAMKQAVSMLCIPPDYLLIDGIS 129 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 L + KGDS+SLSIAAASIIAKV+RDRLM ++P YGF +H GY H Sbjct: 130 -KVPLSIPQKTIKKGDSLSLSIAAASIIAKVSRDRLMMDYETRFPGYGFAAHKGYGCVSH 188 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I E GP IHR TFR ++ Sbjct: 189 MAAIAELGPCAIHRKTFRGVKE 210 >gi|271499509|ref|YP_003332534.1| Ribonuclease H [Dickeya dadantii Ech586] gi|270343064|gb|ACZ75829.1| Ribonuclease H [Dickeya dadantii Ech586] Length = 198 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 85/183 (46%), Positives = 114/183 (62%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP+ G+ DSK +S K+R LY++I A+ S+ Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLADSKTLSEKRRLALYDEIREKALAWSL 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID NI AT+ A+ AV L V P LIDG P LP + AV+KGDS Sbjct: 72 GRAEPEEIDTLNILHATMLAMQRAVAALPVTPDFVLIDGNRCPA-LPMPSQAVVKGDSRV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M + +++P+YGF H GYPTA H + + G + HR +F P Sbjct: 131 AEISAASILAKVTRDREMEVLDQQFPEYGFAQHKGYPTAYHLEKLATLGATLHHRRSFAP 190 Query: 204 LRN 206 ++ Sbjct: 191 VKR 193 >gi|227326550|ref|ZP_03830574.1| ribonuclease HII [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 198 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 85/183 (46%), Positives = 114/183 (62%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP G+ DSK++S K+R LY++I A+ S+ Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVILDPTRPIVGLADSKQLSEKRRLSLYDEIKEKALAWSL 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L ++P LIDG P LP A AV+KGDS Sbjct: 72 GRAEPEEIDQLNILHATMLAMQRAVAGLAIVPDFVLIDGNRCPA-LPMSAQAVVKGDSRV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M +++P YGF H GYPTA H + + G + HR +F P Sbjct: 131 AEISAASIMAKVTRDREMVELDQRFPAYGFAQHKGYPTAFHLEKLAALGATEFHRRSFAP 190 Query: 204 LRN 206 ++ Sbjct: 191 VKR 193 >gi|89052882|ref|YP_508333.1| ribonuclease H [Jannaschia sp. CCS1] gi|122499674|sp|Q28VF4|RNH2_JANSC RecName: Full=Ribonuclease HII; Short=RNase HII gi|88862431|gb|ABD53308.1| RNase HII [Jannaschia sp. CCS1] Length = 199 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 89/198 (44%), Positives = 123/198 (62%), Gaps = 4/198 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P FE+E + VAG+DEVGRG AGPV A++LDP +P G+NDSKK+S +R+ Sbjct: 3 PDFEIERELG----GLVAGVDEVGRGPWAGPVTACAVVLDPMQVPDGLNDSKKLSEARRD 58 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L +I A +S+ AS + ID NI +AT A+ A++ L P ALIDG +IP L Sbjct: 59 ALAMQILRVADVSLGWASVEEIDALNIRQATFLAMRRAMDGLTTPPTHALIDGNAIPPGL 118 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C A V+KGD S+SIAAASI+AKV RD LM+ +P YG+++++GY TAKH + Sbjct: 119 SCPATCVVKGDGRSVSIAAASIVAKVRRDALMKELAVMHPGYGWETNMGYGTAKHAAGLH 178 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + HR +F P+ + Sbjct: 179 HLGVTQYHRRSFAPIAKI 196 >gi|171059517|ref|YP_001791866.1| ribonuclease HII [Leptothrix cholodnii SP-6] gi|170776962|gb|ACB35101.1| Ribonuclease H [Leptothrix cholodnii SP-6] Length = 218 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 85/193 (44%), Positives = 125/193 (64%), Gaps = 2/193 (1%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77 + + + +AG+DE GRG LAGPVV AA+ILD G+ DSK ++ ++RE L+++I + Sbjct: 18 LHFERVGLMAGVDEAGRGPLAGPVVAAAVILDELQPIAGLADSKILTERRRERLFDEIRA 77 Query: 78 SAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 A+ I+ AS + ID+ NI +AT+ A+ AVE L++ P L+DG +P L A A+ Sbjct: 78 KALAFCIAQASVEEIDRLNILQATMLAMKRAVEGLRLKPAQVLVDGNRVPV-LRIPAEAI 136 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 +KGD+ +I+AASI+AKV RDRL + H+ YP YGF H GYPTA H Q +K+ GP Sbjct: 137 VKGDAKVPAISAASILAKVHRDRLCQALHELYPHYGFAVHKGYPTAAHLQALKDHGPCES 196 Query: 197 HRLTFRPLRNLSV 209 HR ++ P+R + Sbjct: 197 HRKSYAPVREAGL 209 >gi|294793773|ref|ZP_06758910.1| ribonuclease HII [Veillonella sp. 3_1_44] gi|294455343|gb|EFG23715.1| ribonuclease HII [Veillonella sp. 3_1_44] Length = 279 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 130/197 (65%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ E M ++ ++ VAG+DEVGRG +AGPV VAA+IL P + G+NDSKK++ +KRE L Sbjct: 77 YDYEGMFYDQGIYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREAL 136 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ +S + ID+ NI++AT A+Y A+ L V + + D +P DL Sbjct: 137 YDIIMDEAVAVSCIFYGPEKIDELNIYEATRQAMYEAIRTLSVPAEAVVADAMKLP-DLR 195 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGDS S +IAAAS+IAKVTRDR M+ +YP YGF H GY T H++ I++ Sbjct: 196 IPVESIIKGDSKSANIAAASVIAKVTRDRYMKSLDDEYPGYGFGIHKGYYTELHKEAIEQ 255 Query: 191 KGPSCIHRLTFRPLRNL 207 +G + +HR +F P++++ Sbjct: 256 QGVTPLHRKSFEPIKSI 272 >gi|85711419|ref|ZP_01042478.1| Ribonuclease HII [Idiomarina baltica OS145] gi|85694920|gb|EAQ32859.1| Ribonuclease HII [Idiomarina baltica OS145] Length = 188 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 90/182 (49%), Positives = 118/182 (64%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + G+DE GRG +AGPVV AA+ILDP G+NDSKK+S KKRE L E+I + A+ SI+ Sbjct: 2 ICGVDEAGRGPIAGPVVAAAVILDPEQPIEGLNDSKKLSAKKRERLSEEIKAKALYWSIA 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + ID+ NI A++ A+ AVE L P L+DG +P DL A AV+ GD+ Sbjct: 62 QSDVDEIDQLNILWASMLAMKRAVEALPEAPTEVLVDGNRVP-DLVVPARAVVGGDASEP 120 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV RDR M H+ YP Y FD H Y TA+H +++K GP IHR +FRP+ Sbjct: 121 TIAAASILAKVERDRQMLEWHQTYPQYEFDRHKAYGTARHLELLKLYGPCVIHRRSFRPV 180 Query: 205 RN 206 R Sbjct: 181 RE 182 >gi|148549378|ref|YP_001269480.1| ribonuclease HII [Pseudomonas putida F1] gi|166226641|sp|A5W836|RNH2_PSEP1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|148513436|gb|ABQ80296.1| RNase HII [Pseudomonas putida F1] Length = 207 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 89/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE L+++I A+ I Sbjct: 13 LVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREALFDEICEKALSFCI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID NI +AT+ A+ AVE L + P+ ALIDG P+ L A V+KGDS Sbjct: 73 ARAEVEEIDSLNILQATMLAMQRAVEGLHITPKLALIDGNRCPK-LAVPAAPVVKGDSQV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKVTRDR M YP YG H GYPT H + + GP+ IHR +F P Sbjct: 132 PAIAAASILAKVTRDREMSAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 191 Query: 204 LR 205 +R Sbjct: 192 VR 193 >gi|212636263|ref|YP_002312788.1| ribonuclease HII [Shewanella piezotolerans WP3] gi|226736824|sp|B8CQ71|RNH2_SHEPW RecName: Full=Ribonuclease HII; Short=RNase HII gi|212557747|gb|ACJ30201.1| Ribonuclease H [Shewanella piezotolerans WP3] Length = 202 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 88/181 (48%), Positives = 119/181 (65%), Gaps = 2/181 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DEVGRG L G VV AA+ILDP+N G+NDSKK+S KKRE L+ +I A+ +S+ + Sbjct: 21 AGVDEVGRGPLIGNVVTAAVILDPHNPIVGLNDSKKLSEKKRELLFNQIQEKALSVSVGA 80 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A+ ID+ NI AT+ A+ AV L + P S L+DG P D Q+ A+IKGD + + Sbjct: 81 ATPAEIDEINILHATMMAMQRAVAGLSIKPTSVLVDGNRCP-DFGMQSHAIIKGDGLIDA 139 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AKV RDR M +YP+YGF+ H GYPT H + + + G HR +FRP+R Sbjct: 140 ISAASIVAKVVRDREMEALAAQYPEYGFEKHKGYPTKAHFEALAKYGILAEHRKSFRPVR 199 Query: 206 N 206 Sbjct: 200 E 200 >gi|330807795|ref|YP_004352257.1| ribonuclease HII [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375903|gb|AEA67253.1| ribonuclease HII [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 214 Score = 257 bits (658), Expect = 5e-67, Method: Composition-based stats. Identities = 87/182 (47%), Positives = 117/182 (64%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+LY++I A+ I Sbjct: 21 LVAGVDEVGRGPLCGAVVTAAVILDPKRPILGLNDSKKLTEARREKLYDEICEKALSWCI 80 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI AT+ A+ AV+ L + P+ A+IDG P+ L +A AVI+GD Sbjct: 81 ARAEVEEIDELNILHATMLAMQRAVQGLHITPKLAMIDGNRCPK-LSMRAEAVIQGDGKV 139 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P Sbjct: 140 PAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 199 Query: 204 LR 205 +R Sbjct: 200 VR 201 >gi|320540045|ref|ZP_08039701.1| putative ribonuclease HII, degrades RNA of DNA-RNA hybrids [Serratia symbiotica str. Tucson] gi|320029894|gb|EFW11917.1| putative ribonuclease HII, degrades RNA of DNA-RNA hybrids [Serratia symbiotica str. Tucson] Length = 197 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 116/184 (63%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LYE+I + A+ S+ Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVILDPAQPIVGLADSKKLSEKRRLALYEEIIAKALSWSL 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L ++P LIDG P LP ++ AV+KGDS Sbjct: 72 GRAEPEEIDRLNILHATMLAMQRAVAGLPIVPDMVLIDGNRCPT-LPMRSQAVVKGDSRV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M + +P YGF H GYPTA H + + G + HR +F P Sbjct: 131 AEISAASILAKVTRDREMIELDRVFPGYGFAQHKGYPTAFHLEQLAVLGATEHHRRSFAP 190 Query: 204 LRNL 207 +R + Sbjct: 191 VRRV 194 >gi|312878029|ref|ZP_07737967.1| Ribonuclease H [Caldicellulosiruptor lactoaceticus 6A] gi|311795181|gb|EFR11572.1| Ribonuclease H [Caldicellulosiruptor lactoaceticus 6A] Length = 206 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 128/197 (64%), Gaps = 4/197 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE+E + + + G+DE GRG LAGPV AA+++D I G+ DSKK++ KKRE+L Sbjct: 10 FEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREKL 69 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +++I +I S++ + ID+ NI+ AT A+ +A+ENL++ P L+DG IP +L Sbjct: 70 FDEIIKESIAYSVAMVDSKIIDEININNATFLAMKNAIENLKIEPDIVLVDGYEIP-NLS 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD S SIA ASI+AKV+RDR + KYP Y F+ H GY T +H +++++ Sbjct: 129 FNQMAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPVYKFEKHKGYGTKEHIEILQK 188 Query: 191 KGPSCIHRLTFRPLRNL 207 GP IHR++F L+N+ Sbjct: 189 YGPCEIHRISF--LKNI 203 >gi|300173225|ref|YP_003772391.1| ribonuclease HII [Leuconostoc gasicomitatum LMG 18811] gi|299887604|emb|CBL91572.1| ribonuclease HII [Leuconostoc gasicomitatum LMG 18811] Length = 254 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 87/197 (44%), Positives = 120/197 (60%), Gaps = 3/197 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E ++ + +AGIDEVGRG LAGPV+ AA+IL + + DSK++S KKRE Sbjct: 58 RFSFERHYWDQGVTYIAGIDEVGRGPLAGPVIAAAVILPSDFHHIDVIDSKQLSAKKREM 117 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY I AI I + ID NI++A A+ AV++L P LID S+ D+ Sbjct: 118 LYHIIIEQAISIGVGIVDAATIDDINIYQAAKLAMTKAVKDLAPEPEVLLIDAMSL--DI 175 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P ++IKGD++S SI AASIIAKVTRDRLM YP YGF ++ GY T +H +K Sbjct: 176 PITQESLIKGDALSNSIGAASIIAKVTRDRLMTEYSVMYPGYGFANNAGYGTKEHLDGLK 235 Query: 190 EKGPSCIHRLTFRPLRN 206 ++G + IHR +F+P+ + Sbjct: 236 KRGITPIHRQSFQPVHD 252 >gi|23098995|ref|NP_692461.1| ribonuclease H [Oceanobacillus iheyensis HTE831] gi|39932410|sp|Q8EQZ4|RNH2_OCEIH RecName: Full=Ribonuclease HII; Short=RNase HII gi|22777223|dbj|BAC13496.1| ribonuclease H [Oceanobacillus iheyensis HTE831] Length = 261 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 89/194 (45%), Positives = 116/194 (59%), Gaps = 2/194 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +AG+DEVGRG LAGPVV AA+IL + GINDSKK+S +R E Sbjct: 61 YEKEAYRNGNHYIAGVDEVGRGPLAGPVVAAAVILPKDFQLLGINDSKKLSEVQRNEFSH 120 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI IS + IDK NI++A+ A+ A+ LQ P ALID + E L C Sbjct: 121 YIKQHAIAYQISFIDNTIIDKINIYEASKQAMKEAISGLQPYPDHALIDAVPL-EGLNCT 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A+IKGD+ S+ IAAAS++AKV RD M+ H+KYP YGF+S++GY T +H Q I+ G Sbjct: 180 YEAIIKGDAESVHIAAASVLAKVARDDWMKELHEKYPLYGFNSNMGYGTKEHLQAIETYG 239 Query: 193 PSCIHRLTFRPLRN 206 + HR +F PL Sbjct: 240 VTPYHRYSFAPLHK 253 >gi|296101352|ref|YP_003611498.1| ribonuclease HII [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055811|gb|ADF60549.1| ribonuclease HII [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 198 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 88/183 (48%), Positives = 112/183 (61%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L+++I A+ S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIIGLNDSKKLSEKRRLALFDEIQEKALAWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L++ P LIDG P LP + AV+KGDS Sbjct: 71 GRAEPHEIDELNILHATMLAMQRAVAGLKIAPEYVLIDGNRCPA-LPVPSMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASIIAKVTRD M YP YGF H GYPTA H + + E G + HR +F P Sbjct: 130 AEISAASIIAKVTRDAEMAALDLTYPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|238026917|ref|YP_002911148.1| ribonuclease HII [Burkholderia glumae BGR1] gi|237876111|gb|ACR28444.1| Ribonuclease HII [Burkholderia glumae BGR1] Length = 215 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 92/182 (50%), Positives = 117/182 (64%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKRE LY +I A + Sbjct: 28 IVCGVDEAGRGPLAGPVVAAAVILDPARPIVGLDDSKALSAKKRERLYAEIVERAQAYCV 87 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS + ID NI AT+ A+ AVE L V+P A IDG P L ++ A+I GD++ Sbjct: 88 ASASVEEIDTLNILHATMLAMKRAVEGLAVLPTLAQIDGNRCPT-LAIRSEAIIGGDALV 146 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDRL+ H +P YGFD H GY T KH ++E GP HR +F P Sbjct: 147 PSISAASILAKVTRDRLLVDLHASFPLYGFDVHSGYGTPKHLAALREHGPCEHHRRSFAP 206 Query: 204 LR 205 +R Sbjct: 207 VR 208 >gi|242240382|ref|YP_002988563.1| ribonuclease HII [Dickeya dadantii Ech703] gi|242132439|gb|ACS86741.1| Ribonuclease H [Dickeya dadantii Ech703] Length = 198 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 86/184 (46%), Positives = 113/184 (61%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG L G VV AA+ILDP G+ DSK++S K+R LY++I A S+ Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVILDPAKPIAGLADSKQLSEKRRRVLYDEIREKARAWSL 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L V P LIDG P LP + AV+KGDS Sbjct: 72 GRAEPEEIDQLNILHATMLAMQRAVAGLPVTPDYVLIDGNRCP-SLPMPSMAVVKGDSRV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M K +P+YGF H GYPTA H + + G + HR +F P Sbjct: 131 AEISAASILAKVTRDREMEELDKLFPEYGFAQHKGYPTAYHLEKLATLGATLHHRRSFAP 190 Query: 204 LRNL 207 ++ + Sbjct: 191 VKRV 194 >gi|125718010|ref|YP_001035143.1| ribonuclease HII [Streptococcus sanguinis SK36] gi|166226664|sp|A3CN38|RNH2_STRSV RecName: Full=Ribonuclease HII; Short=RNase HII gi|125497927|gb|ABN44593.1| Ribonuclease HII, putative [Streptococcus sanguinis SK36] Length = 254 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 124/197 (62%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+ Sbjct: 58 LRYEKELYKADYQAIAGIDEVGRGPLAGPVVAAAVILPPECKIKGLNDSKKIPKKKHQEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A+ + + +++ ID+ NI++AT A+ A+ L + P LID + D+P Sbjct: 118 YQAVLDKALAVGVGLMNNEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKLDVDIP 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM KK+P Y F + GY T H Q ++ Sbjct: 178 --QESIIKGDANSLSIAAASIVAKVTRDKLMADYDKKFPGYDFAKNAGYGTRSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 SGVTPIHRKTFEPIKSM 252 >gi|289626020|ref|ZP_06458974.1| ribonuclease HII [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330868556|gb|EGH03265.1| ribonuclease HII [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 217 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 88/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+LY +I A+ I Sbjct: 13 LVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLYVEIQEKALCWFI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI AT+ A+ AVE L + P+ ALIDG P+ L + V+KGDS Sbjct: 73 ARAEVEEIDQLNILHATMLAMKRAVEGLSITPKLALIDGNRCPQ-LSVPSAPVVKGDSRV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P Sbjct: 132 PAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 191 Query: 204 LR 205 +R Sbjct: 192 VR 193 >gi|26988337|ref|NP_743762.1| ribonuclease HII [Pseudomonas putida KT2440] gi|37999636|sp|Q88MG6|RNH2_PSEPK RecName: Full=Ribonuclease HII; Short=RNase HII gi|24983086|gb|AAN67226.1|AE016349_7 ribonuclease HII [Pseudomonas putida KT2440] gi|313500227|gb|ADR61593.1| RnhB [Pseudomonas putida BIRD-1] Length = 207 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 89/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE L+++I A+ I Sbjct: 13 LVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREALFDEICEKALSFCI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID NI +AT+ A+ AVE L + P+ ALIDG P+ L A V+KGDS Sbjct: 73 ARAEVEEIDSLNILQATMLAMQRAVEGLHITPKLALIDGNRCPK-LAVPAAPVVKGDSQV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKVTRDR M YP YG H GYPT H + + GP+ IHR +F P Sbjct: 132 PAIAAASILAKVTRDREMSAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 191 Query: 204 LR 205 +R Sbjct: 192 VR 193 >gi|330817425|ref|YP_004361130.1| Ribonuclease HII [Burkholderia gladioli BSR3] gi|327369818|gb|AEA61174.1| Ribonuclease HII [Burkholderia gladioli BSR3] Length = 217 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 90/183 (49%), Positives = 118/183 (64%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKRE LY +I + + + Sbjct: 30 IVCGVDEAGRGPLAGPVVAAAVILDPARPILGLDDSKALSAKKRELLYHEIVAHSRAWCV 89 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS + ID NI AT+ A+ AVE L ++P A IDG P L ++ A++ GD++ Sbjct: 90 ASASVEEIDTLNILHATMLAMRRAVEGLSLLPTLAKIDGNRCPT-LGIRSEAIVGGDALV 148 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASIIAKVTRDRL+ H +P YGFD H GY T KH ++E GP HR +F P Sbjct: 149 PSISAASIIAKVTRDRLLVDLHATFPHYGFDVHAGYGTPKHLAALREHGPCEHHRRSFAP 208 Query: 204 LRN 206 +R Sbjct: 209 VRE 211 >gi|260220952|emb|CBA29032.1| Ribonuclease HII [Curvibacter putative symbiont of Hydra magnipapillata] Length = 193 Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 87/182 (47%), Positives = 119/182 (65%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82 VAG+DE GRG LAGPVV AA+ILD G+NDSKK+S +RE+L+++I + A+ S Sbjct: 9 GLVAGVDEAGRGPLAGPVVAAAVILDDLRPIAGLNDSKKLSAARREKLFDEIRAKALCCS 68 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ AS + ID+ NI +ATL A+ AVE L++ P L+DG +P L A A++KGD+ Sbjct: 69 IAQASVEEIDEINILQATLLAMRRAVEGLRLKPAKVLVDGNRLPV-LDVLAEAIVKGDAT 127 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKVTRDR +YP YGF +H GY TA+H ++ G HR TF Sbjct: 128 VPAISAASILAKVTRDRWCAELDARYPQYGFATHKGYGTAEHLAALQTHGACPEHRKTFA 187 Query: 203 PL 204 P+ Sbjct: 188 PV 189 >gi|257487068|ref|ZP_05641109.1| ribonuclease HII [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289651463|ref|ZP_06482806.1| ribonuclease HII [Pseudomonas syringae pv. aesculi str. 2250] gi|320323106|gb|EFW79195.1| ribonuclease HII [Pseudomonas syringae pv. glycinea str. B076] gi|320329622|gb|EFW85611.1| ribonuclease HII [Pseudomonas syringae pv. glycinea str. race 4] gi|330878151|gb|EGH12300.1| ribonuclease HII [Pseudomonas syringae pv. glycinea str. race 4] gi|330894608|gb|EGH27269.1| ribonuclease HII [Pseudomonas syringae pv. mori str. 301020] gi|330985124|gb|EGH83227.1| ribonuclease HII [Pseudomonas syringae pv. lachrymans str. M301315] Length = 217 Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 88/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+LY +I A+ I Sbjct: 13 LVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLYVEIQEKALCWFI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI AT+ A+ AVE L + P+ ALIDG P+ L + V+KGDS Sbjct: 73 ARAEVEEIDQLNILHATMLAMKRAVEGLSITPKLALIDGNRCPQ-LSVPSAPVVKGDSRV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P Sbjct: 132 PAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 191 Query: 204 LR 205 +R Sbjct: 192 VR 193 >gi|127513549|ref|YP_001094746.1| ribonuclease H [Shewanella loihica PV-4] gi|166226652|sp|A3QG89|RNH2_SHELP RecName: Full=Ribonuclease HII; Short=RNase HII gi|126638844|gb|ABO24487.1| RNase HII [Shewanella loihica PV-4] Length = 208 Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 88/186 (47%), Positives = 119/186 (63%), Gaps = 3/186 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 AG+DEVGRG L G VV AA++LDPNN G+NDSKK+S KKR+ LYE+I + A+ +S Sbjct: 18 GFYAGVDEVGRGPLVGDVVTAAVVLDPNNPIEGLNDSKKLSEKKRDALYEEILAKALDVS 77 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--DLPCQAFAVIKGD 140 + S ID+ NI AT+ A+ AV L+ P LIDG +P+ D + AVIKGD Sbjct: 78 VGRCSPLEIDELNILHATMLAMQRAVAGLRARPDRVLIDGNRVPDFTDETLEGHAVIKGD 137 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + +I+AASI+AKV RDR M ++YP+YGF H GYPT H + ++ G HR + Sbjct: 138 GLIPAISAASIVAKVVRDREMEALDERYPEYGFAKHKGYPTKAHFEALEAHGVLAEHRKS 197 Query: 201 FRPLRN 206 FRP++ Sbjct: 198 FRPVKE 203 >gi|71738075|ref|YP_275964.1| ribonuclease HII [Pseudomonas syringae pv. phaseolicola 1448A] gi|298488346|ref|ZP_07006378.1| Ribonuclease HII [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|97189174|sp|Q48F73|RNH2_PSE14 RecName: Full=Ribonuclease HII; Short=RNase HII gi|71558628|gb|AAZ37839.1| Ribonuclease HII (RNase HII) [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157168|gb|EFH98256.1| Ribonuclease HII [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 222 Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 88/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+LY +I A+ I Sbjct: 18 LVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLYVEIQEKALCWFI 77 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI AT+ A+ AVE L + P+ ALIDG P+ L + V+KGDS Sbjct: 78 ARAEVEEIDQLNILHATMLAMKRAVEGLSITPKLALIDGNRCPQ-LSVPSAPVVKGDSRV 136 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P Sbjct: 137 PAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 196 Query: 204 LR 205 +R Sbjct: 197 VR 198 >gi|223933031|ref|ZP_03625025.1| Ribonuclease H [Streptococcus suis 89/1591] gi|302023800|ref|ZP_07249011.1| ribonuclease HII [Streptococcus suis 05HAS68] gi|330832827|ref|YP_004401652.1| ribonuclease HII [Streptococcus suis ST3] gi|223898348|gb|EEF64715.1| Ribonuclease H [Streptococcus suis 89/1591] gi|329307050|gb|AEB81466.1| ribonuclease HII [Streptococcus suis ST3] Length = 259 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 82/195 (42%), Positives = 117/195 (60%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + E + +AGIDEVGRG LAGPVV AA+IL +NDSKKI K E +Y+ Sbjct: 60 YEKNLYENGVEFIAGIDEVGRGPLAGPVVAAAVILPKGCKIRYLNDSKKIPKSKHEAIYQ 119 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 ++ A+ + + ID+ NI++AT A+ A L P LID + D P Sbjct: 120 EVMERAVAVGVGIKDAAVIDQVNIYEATKLAMLEAFGKLSQKPDHLLIDAMKL--DTPIP 177 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ SLSIAAASI+AKVTRD++M K++ YGF + GY TA+H + + + G Sbjct: 178 QTSIIKGDANSLSIAAASIVAKVTRDKMMADYDKEFSGYGFAKNAGYGTAEHLEGLNKLG 237 Query: 193 PSCIHRLTFRPLRNL 207 + IHR TF P++++ Sbjct: 238 ITPIHRKTFEPIKSM 252 >gi|307729345|ref|YP_003906569.1| Ribonuclease H [Burkholderia sp. CCGE1003] gi|307583880|gb|ADN57278.1| Ribonuclease H [Burkholderia sp. CCGE1003] Length = 271 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 89/184 (48%), Positives = 120/184 (65%), Gaps = 3/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-IS 82 V G+DE GRG LAGPVV AA+I DP+ G++DSK ++ KKR+ELYEKI A+ Sbjct: 45 IVCGVDEAGRGPLAGPVVAAAVIFDPSKPMIRGLDDSKALTAKKRDELYEKIVDRALAYC 104 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+SA+ + ID NI AT+ A+ AVE L V P +DG P L ++ AVI GD++ Sbjct: 105 IASATVEEIDSLNILHATMLAMKRAVEGLSVTPTLVKVDGNRCPT-LSVRSEAVIGGDAL 163 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SI+AASI+AKVTRDR++ H+ YP YGF++H GY T +H ++E GP HR +F Sbjct: 164 VKSISAASILAKVTRDRMLLELHQTYPMYGFNAHAGYGTPQHLAALREHGPCEHHRRSFA 223 Query: 203 PLRN 206 P+R Sbjct: 224 PVRE 227 >gi|238897797|ref|YP_002923476.1| RNAse HII [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259494067|sp|C4K435|RNH2_HAMD5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|229465554|gb|ACQ67328.1| RNAse HII [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 200 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 91/184 (49%), Positives = 115/184 (62%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DEVGRG LAGPVV AA+ILDP N G+ DSK +S KKR LYE+IT A+ S Sbjct: 11 QSIAGVDEVGRGPLAGPVVTAAVILDPKNPIIGLADSKTLSKKKRMALYEEITHKALAWS 70 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI ATL A+ AV L + LIDG P L + +++KGDS Sbjct: 71 LGRAESKEIDEINIFHATLLAMQRAVNALGIKTDHVLIDGHICP-ILSIPSSSIVKGDSK 129 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M K +P YGF H GYPTA H + + GP+ HR +FR Sbjct: 130 VPEISAASILAKVTRDREMEALDKVFPGYGFAQHKGYPTAFHLEKLALLGPTEQHRRSFR 189 Query: 203 PLRN 206 P+R Sbjct: 190 PVRR 193 >gi|312862697|ref|ZP_07722937.1| ribonuclease HII [Streptococcus vestibularis F0396] gi|311101557|gb|EFQ59760.1| ribonuclease HII [Streptococcus vestibularis F0396] Length = 256 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 81/197 (41%), Positives = 121/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E ++ + + +AG+DEVGRG LAGPVV AA+IL G+NDSKKI K E + Sbjct: 58 LSYEKVLYAQGVELIAGVDEVGRGPLAGPVVAAAVILPKFCKIKGLNDSKKIPKSKHEAI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+++ A+ + + + ID NI++AT A+ A+ENL P LID ++ DLP Sbjct: 118 YKQVMKEAVAVGVGIKDNHVIDDVNIYEATKLAMAEAIENLSPKPEHLLIDAMTL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD++M +++P Y F + GY T H + + Sbjct: 176 IGQTSIIKGDANSLSIAAASIVAKVTRDKMMADYDQEFPGYAFAKNAGYGTKDHLTGLDK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 236 FGVTPIHRRSFEPIKSI 252 >gi|56460771|ref|YP_156052.1| ribonuclease HII [Idiomarina loihiensis L2TR] gi|81363280|sp|Q5QZK7|RNH2_IDILO RecName: Full=Ribonuclease HII; Short=RNase HII gi|56179781|gb|AAV82503.1| Ribonuclease HII [Idiomarina loihiensis L2TR] Length = 187 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 86/183 (46%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + G DE GRG +AGPVV AA+ILDP+N G+NDSKK+S KKRE+L +I A+ +I+ Sbjct: 2 ICGTDEAGRGPIAGPVVAAAVILDPDNPIEGLNDSKKLSEKKREKLSLEIKEKALYWAIA 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + I+ NI A++ A+ AVE L V P L+DG +PE L A A++ GD+ Sbjct: 62 QSDPDEIEAINILWASMKAMQRAVEALPVKPDMVLVDGNRVPE-LKVPAKAIVGGDASEQ 120 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AKV RDR M H+ YP Y FD H Y T KH +++++ GP IHR F P+ Sbjct: 121 CIAAASILAKVERDRQMLKWHELYPQYEFDKHKAYGTPKHLELLEKHGPCPIHRKGFNPV 180 Query: 205 RNL 207 + L Sbjct: 181 KRL 183 >gi|26246129|ref|NP_752168.1| ribonuclease HII [Escherichia coli CFT073] gi|227884904|ref|ZP_04002709.1| ribonuclease HII [Escherichia coli 83972] gi|300993596|ref|ZP_07180452.1| ribonuclease HII [Escherichia coli MS 45-1] gi|301049903|ref|ZP_07196829.1| ribonuclease HII [Escherichia coli MS 185-1] gi|29336711|sp|Q8FL06|RNH2_ECOL6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|26106526|gb|AAN78712.1|AE016755_212 Ribonuclease HII [Escherichia coli CFT073] gi|227838042|gb|EEJ48508.1| ribonuclease HII [Escherichia coli 83972] gi|300298356|gb|EFJ54741.1| ribonuclease HII [Escherichia coli MS 185-1] gi|300406519|gb|EFJ90057.1| ribonuclease HII [Escherichia coli MS 45-1] gi|307552033|gb|ADN44808.1| ribonuclease HII [Escherichia coli ABU 83972] gi|315294587|gb|EFU53934.1| ribonuclease HII [Escherichia coli MS 153-1] gi|323975649|gb|EGB70745.1| ribonuclease HII [Escherichia coli TW10509] Length = 198 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ LP + AV+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|283783967|ref|YP_003363832.1| ribonuclease HII [Citrobacter rodentium ICC168] gi|282947421|emb|CBG86966.1| ribonuclease HII [Citrobacter rodentium ICC168] Length = 198 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 110/184 (59%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LY++I A+ S Sbjct: 10 RLVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALYQEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A IDK NI AT+ A+ AV L + P LIDG P LP + AV+KGDS Sbjct: 70 LGRAEPHEIDKLNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPA-LPVPSMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + G + HR +F Sbjct: 129 VAEISAASILAKVTRDAEMAALDSVFPQYGFAQHKGYPTAFHLEALAAHGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|237802463|ref|YP_002887657.1| ribonuclease HII [Chlamydia trachomatis B/Jali20/OT] gi|231273697|emb|CAX10475.1| ribonuclease HII [Chlamydia trachomatis B/Jali20/OT] Length = 217 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 88/195 (45%), Positives = 116/195 (59%), Gaps = 4/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E E+ VAG+DE GRG LAGPVV A IL + GI+DSKK+ K+R LYE Sbjct: 17 FENQAIEQGYSRVAGVDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLIPKQRRYLYE 76 Query: 74 KITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + S + ID+ NI +AT +A+ A+ +LQ P L+DG +P +P Sbjct: 77 LLLEDPEVDCGVGVVSVERIDEINILEATKEAMVQAIASLQSTPDFLLVDGLFLPHKVP- 135 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGD+ S+SIAAASIIAK RD LMR H +YP+YGFD H GY TA H Q +K Sbjct: 136 -SLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHLQALKHF 194 Query: 192 GPSCIHRLTFRPLRN 206 GP HR +F P++ Sbjct: 195 GPCVYHRKSFSPVKE 209 >gi|110640402|ref|YP_668130.1| ribonuclease HII [Escherichia coli 536] gi|170680885|ref|YP_001742311.1| ribonuclease HII [Escherichia coli SMS-3-5] gi|191172810|ref|ZP_03034347.1| ribonuclease HII [Escherichia coli F11] gi|215485344|ref|YP_002327775.1| ribonuclease HII [Escherichia coli O127:H6 str. E2348/69] gi|218688058|ref|YP_002396270.1| ribonuclease HII [Escherichia coli ED1a] gi|218703437|ref|YP_002410956.1| ribonuclease HII [Escherichia coli UMN026] gi|293403252|ref|ZP_06647349.1| rnhB [Escherichia coli FVEC1412] gi|298378788|ref|ZP_06988672.1| ribonuclease HII [Escherichia coli FVEC1302] gi|300900779|ref|ZP_07118923.1| ribonuclease HII [Escherichia coli MS 198-1] gi|300938590|ref|ZP_07153323.1| ribonuclease HII [Escherichia coli MS 21-1] gi|300984943|ref|ZP_07177208.1| ribonuclease HII [Escherichia coli MS 200-1] gi|306815218|ref|ZP_07449367.1| ribonuclease HII [Escherichia coli NC101] gi|312966320|ref|ZP_07780546.1| ribonuclease HII family protein [Escherichia coli 2362-75] gi|331645326|ref|ZP_08346437.1| ribonuclease HII [Escherichia coli M605] gi|331661254|ref|ZP_08362186.1| ribonuclease HII [Escherichia coli TA206] gi|331681568|ref|ZP_08382205.1| ribonuclease HII [Escherichia coli H299] gi|123049490|sp|Q0TLF0|RNH2_ECOL5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|226736820|sp|B7N850|RNH2_ECOLU RecName: Full=Ribonuclease HII; Short=RNase HII gi|226736821|sp|B1LGY5|RNH2_ECOSM RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807974|sp|B7UJ84|RNH2_ECO27 RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807976|sp|B7MP43|RNH2_ECO81 RecName: Full=Ribonuclease HII; Short=RNase HII gi|110341994|gb|ABG68231.1| ribonuclease HII [Escherichia coli 536] gi|170518603|gb|ACB16781.1| ribonuclease HII [Escherichia coli SMS-3-5] gi|190906960|gb|EDV66562.1| ribonuclease HII [Escherichia coli F11] gi|215263416|emb|CAS07736.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli O127:H6 str. E2348/69] gi|218425622|emb|CAR06408.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli ED1a] gi|218430534|emb|CAR11400.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli UMN026] gi|222032013|emb|CAP74752.1| ribonuclease HII [Escherichia coli LF82] gi|281177408|dbj|BAI53738.1| ribonuclease HII [Escherichia coli SE15] gi|284919958|emb|CBG33013.1| ribonuclease HII [Escherichia coli 042] gi|291430167|gb|EFF03181.1| rnhB [Escherichia coli FVEC1412] gi|298281122|gb|EFI22623.1| ribonuclease HII [Escherichia coli FVEC1302] gi|300306593|gb|EFJ61113.1| ribonuclease HII [Escherichia coli MS 200-1] gi|300355728|gb|EFJ71598.1| ribonuclease HII [Escherichia coli MS 198-1] gi|300456472|gb|EFK19965.1| ribonuclease HII [Escherichia coli MS 21-1] gi|305850880|gb|EFM51335.1| ribonuclease HII [Escherichia coli NC101] gi|309700391|emb|CBI99679.1| ribonuclease HII [Escherichia coli ETEC H10407] gi|312289563|gb|EFR17457.1| ribonuclease HII family protein [Escherichia coli 2362-75] gi|312944791|gb|ADR25618.1| ribonuclease HII [Escherichia coli O83:H1 str. NRG 857C] gi|320196940|gb|EFW71561.1| Ribonuclease HII [Escherichia coli WV_060327] gi|323190417|gb|EFZ75692.1| ribonuclease HII family protein [Escherichia coli RN587/1] gi|324008245|gb|EGB77464.1| ribonuclease HII [Escherichia coli MS 57-2] gi|324014099|gb|EGB83318.1| ribonuclease HII [Escherichia coli MS 60-1] gi|330910033|gb|EGH38543.1| ribonuclease H2 [Escherichia coli AA86] gi|331046083|gb|EGI18202.1| ribonuclease HII [Escherichia coli M605] gi|331052296|gb|EGI24335.1| ribonuclease HII [Escherichia coli TA206] gi|331081789|gb|EGI52950.1| ribonuclease HII [Escherichia coli H299] Length = 198 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ LP + AV+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|237800157|ref|ZP_04588618.1| ribonuclease HII [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023014|gb|EGI03071.1| ribonuclease HII [Pseudomonas syringae pv. oryzae str. 1_6] Length = 217 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 89/182 (48%), Positives = 116/182 (63%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+L+ +I A+ I Sbjct: 13 LVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLFVEIQEKALCWFI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI AT+ A+ AVE L V P+ ALIDG P+ L + V+KGDS Sbjct: 73 ARAEVEEIDQLNILHATMLAMKRAVEGLSVTPKLALIDGNRCPQ-LSVPSAPVVKGDSKV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV+RDR M YP YG H GYPTA H + + GP+ IHR +F P Sbjct: 132 PAIAAASILAKVSRDREMAALELVYPGYGIGGHKGYPTAVHLEALARLGPTPIHRRSFGP 191 Query: 204 LR 205 +R Sbjct: 192 VR 193 >gi|228476746|ref|ZP_04061412.1| ribonuclease HII [Streptococcus salivarius SK126] gi|228251617|gb|EEK10718.1| ribonuclease HII [Streptococcus salivarius SK126] Length = 255 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 82/197 (41%), Positives = 121/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + + +AG+DEVGRG LAGPVV AA+IL G+NDSKKI K E + Sbjct: 58 LSYEKSLYTQGVELIAGVDEVGRGPLAGPVVAAAVILPKFCKIKGLNDSKKIPKSKHEAI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+++ A+ + I + ID NI++AT A+ A+E L+ P LID ++ DLP Sbjct: 118 YKQVMKEAVAVGIGIKDNHVIDDVNIYEATKLAMVEAIEKLEPQPEHLLIDAMTL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD++M +++P Y F + GY T +H I + Sbjct: 176 IGQTSIIKGDANSLSIAAASIVAKVTRDKMMADYEQEFPGYAFAKNAGYGTKEHLSGIDK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 236 FGVTPIHRRSFEPIKSI 252 >gi|225180946|ref|ZP_03734394.1| Ribonuclease H [Dethiobacter alkaliphilus AHT 1] gi|225168427|gb|EEG77230.1| Ribonuclease H [Dethiobacter alkaliphilus AHT 1] Length = 260 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 96/191 (50%), Positives = 120/191 (62%), Gaps = 2/191 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +LE REK +AG+DE GRG LAGPVV A+IL N G+NDSKK++ +KREEL Sbjct: 64 LKLERAAREKGFTYIAGVDEAGRGPLAGPVVAGAVILPDNFFLAGLNDSKKLTPQKREEL 123 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YE ITS A+ S+ ID NI +A+ A+Y A+ L V P AL+ E+LP Sbjct: 124 YEAITSEAVAWSVGIGEVWEIDDINILQASKLAMYRALLTLSVKPDYALL-DALELEELP 182 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 V+ GD +SLSIAAAS++AKVTRDRLM K YP YGF H GYPTA+H+ I + Sbjct: 183 FAQQGVVGGDGLSLSIAAASVVAKVTRDRLMCEQEKMYPGYGFSLHKGYPTAEHRSAIAK 242 Query: 191 KGPSCIHRLTF 201 GP IHR +F Sbjct: 243 LGPCPIHRKSF 253 >gi|312793164|ref|YP_004026087.1| ribonuclease h [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180304|gb|ADQ40474.1| Ribonuclease H [Caldicellulosiruptor kristjanssonii 177R1B] Length = 206 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 85/203 (41%), Positives = 131/203 (64%), Gaps = 4/203 (1%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + + +FE+E + + + G+DE GRG LAGPV AA+++D I G+ DSKK++ Sbjct: 4 LEDENYFEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKKIIEGVRDSKKLTP 63 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKRE+L+++I +I S++ + ID+ NI+ AT A+ +A+ENL++ P L+DG Sbjct: 64 KKREKLFDEIIKESIAYSVAMVDSKIIDEININNATFLAMKNAIENLKIEPDIVLVDGYE 123 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IP +L A+IKGD S SIA ASI+AKV+RDR + KYP Y F+ H GY T +H Sbjct: 124 IP-NLSFNQMAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPVYKFEKHKGYGTKEH 182 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 +++++ GP IHR++F L+N+ Sbjct: 183 IEILQKYGPCEIHRISF--LKNI 203 >gi|302872177|ref|YP_003840813.1| Ribonuclease H [Caldicellulosiruptor obsidiansis OB47] gi|302575036|gb|ADL42827.1| Ribonuclease H [Caldicellulosiruptor obsidiansis OB47] Length = 206 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 127/197 (64%), Gaps = 4/197 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE+E + + + G+DE GRG LAGPV AA+++D I G+ DSKK++ KKRE+L Sbjct: 10 FEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREKL 69 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +E+I +I S++ + ID+ NI+ AT + +A+ENL++ P L+DG IP +L Sbjct: 70 FEEIIKGSIAYSVAMVDSKIIDEININNATFLVMKNAIENLKIEPDIVLVDGYEIP-NLN 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD S SIA ASI+AKV+RDR + KYP Y F+ H GY T +H +++++ Sbjct: 129 FNQRAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPLYKFEKHKGYGTKEHIEILQK 188 Query: 191 KGPSCIHRLTFRPLRNL 207 GP IHR++F L+N+ Sbjct: 189 YGPCEIHRISF--LKNI 203 >gi|261338819|ref|ZP_05966677.1| hypothetical protein ENTCAN_05014 [Enterobacter cancerogenus ATCC 35316] gi|288318642|gb|EFC57580.1| ribonuclease HII [Enterobacter cancerogenus ATCC 35316] Length = 198 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 88/183 (48%), Positives = 112/183 (61%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L+++I A+ S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALFDEIQEKALAWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L++ P LIDG P LP + AV+KGDS Sbjct: 71 GRAEPHEIDELNILHATMLAMQRAVAGLKITPEYVLIDGNRCPA-LPVPSMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASIIAKVTRD M YP YGF H GYPTA H + + E G + HR +F P Sbjct: 130 PEISAASIIAKVTRDAEMAALDLTYPLYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|90420158|ref|ZP_01228066.1| ribonuclease HII [Aurantimonas manganoxydans SI85-9A1] gi|90335492|gb|EAS49242.1| ribonuclease HII [Aurantimonas manganoxydans SI85-9A1] Length = 228 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 97/197 (49%), Positives = 124/197 (62%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F EA + VAGIDE GRG LAGPVV AA+I + P G+NDSKK++ + RE Sbjct: 25 PDFSREAGLLADGKRFVAGIDEAGRGPLAGPVVTAAVIFPTRDFPDGLNDSKKLTAEDRE 84 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ +I + + I+SAS ID+ NI ATL A+ A+ L P L+DGR +P L Sbjct: 85 RLFAEIVAKGWVGIASASADEIDRFNIRGATLIAMRRALHALPQAPCHVLVDGRDVPPAL 144 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C AVI GD++SLSIAAASI+AKVTRDR+M A + Y YGF H+GY T +H I Sbjct: 145 RCAGTAVISGDALSLSIAAASIVAKVTRDRIMARACRAYEGYGFSRHMGYGTPEHLGAIA 204 Query: 190 EKGPSCIHRLTFRPLRN 206 GP+ IHR++F PLR Sbjct: 205 RLGPTPIHRMSFSPLRR 221 >gi|323935023|gb|EGB31396.1| ribonuclease HII [Escherichia coli E1520] Length = 198 Score = 256 bits (656), Expect = 9e-67, Method: Composition-based stats. Identities = 88/184 (47%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ LP A AV+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDSEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|77408047|ref|ZP_00784795.1| ribonuclease HII [Streptococcus agalactiae COH1] gi|77173312|gb|EAO76433.1| ribonuclease HII [Streptococcus agalactiae COH1] Length = 253 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 88/195 (45%), Positives = 124/195 (63%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + +++ +AGIDEVGRG LAGPVV AA+IL PN +NDSKKI KK +E+Y+ Sbjct: 60 YEKKLYIEHINLIAGIDEVGRGPLAGPVVAAAVILPPNCKIKHLNDSKKIPKKKHQEIYQ 119 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I A+ + I Q ID NI++AT A+ AV +L V+P LID + DLP Sbjct: 120 NILDQALAVGIGIQDSQCIDDINIYEATKHAMIDAVSHLSVVPEHLLIDAMVL--DLPIP 177 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +IKGD+ SLSIAAASI+AKVTRD++M KYP + F + GY T +H + +++ G Sbjct: 178 QTKIIKGDANSLSIAAASIVAKVTRDKIMSDYDSKYPGFAFSKNAGYGTKEHLEGLQKYG 237 Query: 193 PSCIHRLTFRPLRNL 207 + IHR +F P++++ Sbjct: 238 ITPIHRKSFEPIKSM 252 >gi|218547638|ref|YP_002381429.1| ribonuclease HII [Escherichia fergusonii ATCC 35469] gi|293418068|ref|ZP_06660690.1| ribonuclease HII [Escherichia coli B185] gi|331651088|ref|ZP_08352116.1| ribonuclease HII [Escherichia coli M718] gi|331661557|ref|ZP_08362481.1| ribonuclease HII [Escherichia coli TA143] gi|226736822|sp|B7LW62|RNH2_ESCF3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|218355179|emb|CAQ87786.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia fergusonii ATCC 35469] gi|291430786|gb|EFF03784.1| ribonuclease HII [Escherichia coli B185] gi|331051542|gb|EGI23591.1| ribonuclease HII [Escherichia coli M718] gi|331061472|gb|EGI33435.1| ribonuclease HII [Escherichia coli TA143] Length = 198 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 88/184 (47%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ LP A AV+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|319943812|ref|ZP_08018093.1| ribonuclease HII [Lautropia mirabilis ATCC 51599] gi|319743045|gb|EFV95451.1| ribonuclease HII [Lautropia mirabilis ATCC 51599] Length = 199 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 82/180 (45%), Positives = 114/180 (63%), Gaps = 1/180 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DE GRG LAGPVV AA+IL P++ G+ DSKK+S ++RE L +I A+ +++ Sbjct: 13 IAGVDEAGRGPLAGPVVAAAVILSPDHPIEGLRDSKKLSARRRETLANEIREKALAFAVA 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS + ID+ NI ATL A+ A++ LQ P IDG P+ + VI GD Sbjct: 73 SASVEEIDRLNILHATLLAMTRAIQGLQPQPLHVRIDGNRAPKLEGLRVETVIGGDDQDP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AK RD LM +++P YGF+ H+GY TA H ++E GP IHR +F P+ Sbjct: 133 AIAAASILAKTVRDHLMLQYAEQFPAYGFERHMGYGTAVHMAALREHGPCEIHRRSFAPV 192 >gi|297617100|ref|YP_003702259.1| ribonuclease H [Syntrophothermus lipocalidus DSM 12680] gi|297144937|gb|ADI01694.1| Ribonuclease H [Syntrophothermus lipocalidus DSM 12680] Length = 222 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 86/196 (43%), Positives = 125/196 (63%), Gaps = 2/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + K + VAG DEVGRG +AGPVV AA+IL P+ G+NDSK++ KKRE L Sbjct: 15 EYEYGLYAKGIRLVAGTDEVGRGPIAGPVVAAAVILPPDFEVPGVNDSKQVPPKKREWLS 74 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +KI +A+ ++ Y+D+ NI AT +A+ A+ L + P ++DG IPE L Sbjct: 75 DKIKENALTWAVGILFPPYLDRINILNATWEAMRLALGGLAIPPEHVIVDGWPIPE-LGV 133 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++KGDS+S+S+A ASI+AKV RDR+M + YP YGF H GY T +H + ++ K Sbjct: 134 TQTPLVKGDSLSISVACASILAKVERDRIMTALDEVYPGYGFARHKGYATREHLRALEVK 193 Query: 192 GPSCIHRLTFRPLRNL 207 GP IHR++F P++++ Sbjct: 194 GPCPIHRISFEPIKSM 209 >gi|283835245|ref|ZP_06354986.1| ribonuclease HII [Citrobacter youngae ATCC 29220] gi|291068956|gb|EFE07065.1| ribonuclease HII [Citrobacter youngae ATCC 29220] Length = 198 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L+++I A+ S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIIGLNDSKKLSEKRRLALFDEIKEKALSWSV 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L + P LIDG P LP + AV+KGDS Sbjct: 71 GRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPA-LPVPSMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H + + G + HR +F P Sbjct: 130 AEISAASILAKVTRDAEMAALDTVFPQYGFAQHKGYPTAFHLEKLALHGATEHHRRSFGP 189 Query: 204 LRNL 207 ++ + Sbjct: 190 VKRV 193 >gi|206579509|ref|YP_002240329.1| ribonuclease HII [Klebsiella pneumoniae 342] gi|288937035|ref|YP_003441094.1| ribonuclease H [Klebsiella variicola At-22] gi|238056780|sp|B5Y1I8|RNH2_KLEP3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|206568567|gb|ACI10343.1| ribonuclease HII [Klebsiella pneumoniae 342] gi|288891744|gb|ADC60062.1| Ribonuclease H [Klebsiella variicola At-22] Length = 199 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 87/183 (47%), Positives = 112/183 (61%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L ++I A+ S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPAKPIVGLNDSKKLSEKRRLALCDEIKEKALCWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L ++P LIDG P LP + AV+KGDS Sbjct: 71 GRAEPHEIDELNILHATMLAMQRAVAGLSIVPEFVLIDGNRCP-SLPMPSLAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H Q ++E G + HR +F P Sbjct: 130 AEISAASILAKVTRDAEMATLDLAFPHYGFAQHKGYPTAVHLQKLQEHGATEHHRRSFGP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|315640709|ref|ZP_07895811.1| ribonuclease HII [Enterococcus italicus DSM 15952] gi|315483464|gb|EFU73958.1| ribonuclease HII [Enterococcus italicus DSM 15952] Length = 255 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 91/195 (46%), Positives = 122/195 (62%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + K VAGIDEVGRG LAGPVV AA+IL P G+NDSK++ +RE L+ Sbjct: 61 EFEKIAWSKGAQAVAGIDEVGRGPLAGPVVAAAVILPPARQFLGLNDSKQVPEAQREALF 120 Query: 73 EKITSSAIISISSA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I+ AI S Q ID+ NI++A+ A+ A+E+L LID ++P +LP Sbjct: 121 QAISEQAIAIGIGIISPQCIDEVNIYEASKLAMMEAIEHLSTPADYLLIDAMTLPINLP- 179 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S SIAAASIIAKVTRDR+M+ +YP Y F+ + GY TAKH +K Sbjct: 180 -QEKLIKGDARSNSIAAASIIAKVTRDRMMKQYAIEYPGYDFEHNAGYGTAKHLAGLKAN 238 Query: 192 GPSCIHRLTFRPLRN 206 G + IHR +F P++N Sbjct: 239 GITPIHRKSFAPVKN 253 >gi|170017294|ref|YP_001728213.1| ribonuclease HII [Leuconostoc citreum KM20] gi|169804151|gb|ACA82769.1| Ribonuclease HII [Leuconostoc citreum KM20] Length = 266 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 84/197 (42%), Positives = 116/197 (58%), Gaps = 3/197 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E K + VAG+DEVGRG LAGPVV AA+IL + + DSK+++ KRE+ Sbjct: 64 RFNFERDYWLKGVELVAGVDEVGRGPLAGPVVAAAVILPHDFNIVDVIDSKQVAQHKREQ 123 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LYE I A+ I I S + ID+ NI++A A+ A+ NL P++ LID + L Sbjct: 124 LYEIILDQAVSIGIGSVDAKTIDEINIYEAARQAMTEAINNLAPQPQALLIDAMQVY--L 181 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++IKGD+ S SI AASI+AKV RD++M K YP Y F + GY T KH I Sbjct: 182 DITQQSLIKGDARSNSIGAASIVAKVIRDKMMTDYDKVYPGYDFAQNAGYGTKKHLAGID 241 Query: 190 EKGPSCIHRLTFRPLRN 206 + G + IHR +F+P+ + Sbjct: 242 KLGVTPIHRRSFQPVHD 258 >gi|15799865|ref|NP_285877.1| ribonuclease HII [Escherichia coli O157:H7 EDL933] gi|15829439|ref|NP_308212.1| ribonuclease HII [Escherichia coli O157:H7 str. Sakai] gi|168752165|ref|ZP_02777187.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4113] gi|168758706|ref|ZP_02783713.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4401] gi|168764954|ref|ZP_02789961.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4501] gi|168769950|ref|ZP_02794957.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4486] gi|168777709|ref|ZP_02802716.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4196] gi|168782075|ref|ZP_02807082.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4076] gi|168789292|ref|ZP_02814299.1| ribonuclease HII [Escherichia coli O157:H7 str. EC869] gi|168802471|ref|ZP_02827478.1| ribonuclease HII [Escherichia coli O157:H7 str. EC508] gi|187731145|ref|YP_001878985.1| ribonuclease HII [Shigella boydii CDC 3083-94] gi|194435006|ref|ZP_03067247.1| ribonuclease HII [Shigella dysenteriae 1012] gi|195939879|ref|ZP_03085261.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4024] gi|208805984|ref|ZP_03248321.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4206] gi|208813645|ref|ZP_03254974.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4045] gi|208821027|ref|ZP_03261347.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4042] gi|209400402|ref|YP_002268791.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4115] gi|217325357|ref|ZP_03441441.1| ribonuclease HII [Escherichia coli O157:H7 str. TW14588] gi|218698603|ref|YP_002406232.1| ribonuclease HII [Escherichia coli IAI39] gi|254791316|ref|YP_003076153.1| ribonuclease HII [Escherichia coli O157:H7 str. TW14359] gi|261226937|ref|ZP_05941218.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli O157:H7 str. FRIK2000] gi|261255341|ref|ZP_05947874.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli O157:H7 str. FRIK966] gi|291281005|ref|YP_003497823.1| Ribonuclease HII [Escherichia coli O55:H7 str. CB9615] gi|24638183|sp|Q8X8X6|RNH2_ECO57 RecName: Full=Ribonuclease HII; Short=RNase HII gi|226736818|sp|B7NIE5|RNH2_ECO7I RecName: Full=Ribonuclease HII; Short=RNase HII gi|238056776|sp|B5Z0G2|RNH2_ECO5E RecName: Full=Ribonuclease HII; Short=RNase HII gi|238689501|sp|B2U326|RNH2_SHIB3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|12512911|gb|AAG54485.1|AE005194_6 RNAse HII, degrades RNA of DNA-RNA hybrids [Escherichia coli O157:H7 str. EDL933] gi|13359641|dbj|BAB33608.1| RNAse HII [Escherichia coli O157:H7 str. Sakai] gi|187428137|gb|ACD07411.1| ribonuclease HII [Shigella boydii CDC 3083-94] gi|187767120|gb|EDU30964.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4196] gi|188013909|gb|EDU52031.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4113] gi|189000369|gb|EDU69355.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4076] gi|189354506|gb|EDU72925.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4401] gi|189361051|gb|EDU79470.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4486] gi|189365141|gb|EDU83557.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4501] gi|189371107|gb|EDU89523.1| ribonuclease HII [Escherichia coli O157:H7 str. EC869] gi|189375551|gb|EDU93967.1| ribonuclease HII [Escherichia coli O157:H7 str. EC508] gi|194416742|gb|EDX32870.1| ribonuclease HII [Shigella dysenteriae 1012] gi|208725785|gb|EDZ75386.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4206] gi|208734922|gb|EDZ83609.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4045] gi|208741150|gb|EDZ88832.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4042] gi|209161802|gb|ACI39235.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4115] gi|209745714|gb|ACI71164.1| RNAse HII [Escherichia coli] gi|209745716|gb|ACI71165.1| RNAse HII [Escherichia coli] gi|209745718|gb|ACI71166.1| RNAse HII [Escherichia coli] gi|209745720|gb|ACI71167.1| RNAse HII [Escherichia coli] gi|209745722|gb|ACI71168.1| RNAse HII [Escherichia coli] gi|217321578|gb|EEC30002.1| ribonuclease HII [Escherichia coli O157:H7 str. TW14588] gi|218368589|emb|CAR16326.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli IAI39] gi|254590716|gb|ACT70077.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli O157:H7 str. TW14359] gi|290760878|gb|ADD54839.1| Ribonuclease HII [Escherichia coli O55:H7 str. CB9615] gi|320173336|gb|EFW48539.1| Ribonuclease HII [Shigella dysenteriae CDC 74-1112] gi|320180910|gb|EFW55832.1| Ribonuclease HII [Shigella boydii ATCC 9905] gi|320186605|gb|EFW61330.1| Ribonuclease HII [Shigella flexneri CDC 796-83] gi|320190291|gb|EFW64941.1| Ribonuclease HII [Escherichia coli O157:H7 str. EC1212] gi|320639989|gb|EFX09574.1| ribonuclease HII [Escherichia coli O157:H7 str. G5101] gi|320644759|gb|EFX13803.1| ribonuclease HII [Escherichia coli O157:H- str. 493-89] gi|320652915|gb|EFX21153.1| ribonuclease HII [Escherichia coli O157:H- str. H 2687] gi|320658303|gb|EFX26032.1| ribonuclease HII [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663613|gb|EFX30897.1| ribonuclease HII [Escherichia coli O55:H7 str. USDA 5905] gi|320668926|gb|EFX35721.1| ribonuclease HII [Escherichia coli O157:H7 str. LSU-61] gi|326339762|gb|EGD63570.1| Ribonuclease HII [Escherichia coli O157:H7 str. 1044] gi|326345096|gb|EGD68839.1| Ribonuclease HII [Escherichia coli O157:H7 str. 1125] gi|332095122|gb|EGJ00154.1| ribonuclease HII family protein [Shigella boydii 5216-82] gi|332097620|gb|EGJ02597.1| ribonuclease HII family protein [Shigella dysenteriae 155-74] Length = 198 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 88/184 (47%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ LP A AV+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|290512456|ref|ZP_06551822.1| ribonuclease HII [Klebsiella sp. 1_1_55] gi|289774797|gb|EFD82799.1| ribonuclease HII [Klebsiella sp. 1_1_55] Length = 198 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 87/183 (47%), Positives = 112/183 (61%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L ++I A+ S+ Sbjct: 10 LVAGVDEVGRGPLVGAVVTAAVILDPAKPIVGLNDSKKLSEKRRLALCDEIKEKALCWSL 69 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L ++P LIDG P LP + AV+KGDS Sbjct: 70 GRAEPHEIDELNILHATMLAMQRAVAGLSIVPEFVLIDGNRCP-SLPMPSLAVVKGDSRV 128 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H Q ++E G + HR +F P Sbjct: 129 AEISAASILAKVTRDAEMATLDLAFPHYGFAQHKGYPTAVHLQKLQEHGATEHHRRSFGP 188 Query: 204 LRN 206 ++ Sbjct: 189 VKR 191 >gi|172057903|ref|YP_001814363.1| ribonuclease H [Exiguobacterium sibiricum 255-15] gi|171990424|gb|ACB61346.1| Ribonuclease H [Exiguobacterium sibiricum 255-15] Length = 250 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 84/191 (43%), Positives = 117/191 (61%), Gaps = 4/191 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E R + +AG+DEVGRG LAGPVV AA+IL G+ DSK++S K+R Y+ Sbjct: 60 FEDRYRAQGHQRIAGVDEVGRGPLAGPVVAAAVILPAGFYHPGLTDSKQMSKKQRSAAYQ 119 Query: 74 KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A ++I + ID+ NI++A+ A+ AV L P + L+D ++ DLP Sbjct: 120 HIQEVAEVAIGIIEPEEIDRINIYQASKQAMQQAVAQL--TPDALLVDAMTLDVDLP--Q 175 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ S+SIAAAS+IAK TRD +M YP+YGFD H GY TA+H Q + G Sbjct: 176 ESLIKGDARSVSIAAASVIAKETRDTMMEQYAVLYPEYGFDQHAGYGTAQHLQALDRVGV 235 Query: 194 SCIHRLTFRPL 204 + IHR TF+P+ Sbjct: 236 TPIHRKTFKPV 246 >gi|189043613|sp|A5EEC1|RNH2_BRASB RecName: Full=Ribonuclease HII; Short=RNase HII Length = 289 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 1/195 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + ++ +WPVAG DE GRG LAGPVV AA+ILDPN IP G++DSK++S ++RE Sbjct: 62 PSFRRERALLKQGIWPVAGCDEAGRGPLAGPVVAAAVILDPNRIPKGLDDSKRLSAEQRE 121 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L++KI ++ +++ AS ID+ NI +A+L A+ AV L P+ +DGR D+ Sbjct: 122 ALFDKICKTSAFAVAFASPARIDRDNILRASLWALSRAVRALPEAPKHVFVDGRD-RIDV 180 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C AVI GD + +SIAAASI+AKVTRDRLM + P YGF+ H GY +H + Sbjct: 181 DCHCEAVIGGDGLVMSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYGVPEHLAALD 240 Query: 190 EKGPSCIHRLTFRPL 204 GPS HR F P+ Sbjct: 241 RLGPSVHHRSLFAPV 255 >gi|294140018|ref|YP_003555996.1| ribonuclease HII [Shewanella violacea DSS12] gi|293326487|dbj|BAJ01218.1| ribonuclease HII [Shewanella violacea DSS12] Length = 218 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 90/191 (47%), Positives = 119/191 (62%), Gaps = 8/191 (4%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKRE L+ +I A+ IS Sbjct: 18 GLYAGVDEVGRGPLVGNVVTAAVILDPNNPILGLNDSKKLSEKKREALFTEIHEKALSIS 77 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-------EDLPCQAFA 135 + AS + ID+ NI AT+ A+ AV L++ P L+DG P +L +A A Sbjct: 78 VGHASPEEIDELNILHATMLAMQRAVAGLEIKPVKVLVDGNRTPIFHHGDNTELAIEAHA 137 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 ++KGD + I+AASIIAKV RDR M + ++P YGF H GYPT H Q +++ G Sbjct: 138 IVKGDGLIAGISAASIIAKVIRDREMELLDMEHPQYGFAKHKGYPTKAHFQALEQHGVLA 197 Query: 196 IHRLTFRPLRN 206 HR +FRP+R Sbjct: 198 EHRKSFRPVRE 208 >gi|325262275|ref|ZP_08129012.1| ribonuclease HII [Clostridium sp. D5] gi|324032107|gb|EGB93385.1| ribonuclease HII [Clostridium sp. D5] Length = 254 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 95/203 (46%), Positives = 124/203 (61%), Gaps = 8/203 (3%) Query: 11 HFELEAMVREK----NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 LE M R + + GIDEVGRG LAGPVV A+IL + INDSKK+S K Sbjct: 53 RLRLEQMKRYEKKYDEHTFICGIDEVGRGPLAGPVVAGAVILPKDCEILYINDSKKLSAK 112 Query: 67 KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KREELY++I A+ I AS IDK NI +AT +A+ AV+ L+ P L D +I Sbjct: 113 KREELYDEIMDKAVATGIGMASPARIDKINILQATYEAMRIAVQELKTAPTLLLNDAVTI 172 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + +IKGD+ S+SIAAASIIAKVTRDRLM K P YGF + GY +A H Sbjct: 173 P-GITLPQVPIIKGDAKSVSIAAASIIAKVTRDRLMLEYDKILPGYGFAENKGYGSAAHI 231 Query: 186 QVIKEKGPSCIHRLTFRPLRNLS 208 + +K+ GP+ IHR++F ++N + Sbjct: 232 EALKKMGPTPIHRVSF--IKNFA 252 >gi|255067201|ref|ZP_05319056.1| ribonuclease HII [Neisseria sicca ATCC 29256] gi|255048569|gb|EET44033.1| ribonuclease HII [Neisseria sicca ATCC 29256] Length = 197 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 80/188 (42%), Positives = 110/188 (58%), Gaps = 1/188 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 KN + +AG+DE GRG L G V AA+IL P+ G+ DSKK+S KKR+ L I A+ Sbjct: 2 KNSFLIAGVDEAGRGPLVGSVFAAAVILPPSYHLPGLTDSKKLSEKKRDTLAVLIKEQAL 61 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ A Q I + NI AT+ A+ AV L + P IDG +P+ L A AV+KG Sbjct: 62 AWCVAQADPQEIFELNILHATMLAMSRAVHGLAIKPDKVFIDGNRVPKALGVDAEAVVKG 121 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS + I+AAS++AK RD M ++YP YGFD H GY TA+H + ++ G HR Sbjct: 122 DSKIMEISAASVLAKTARDAEMYALAERYPQYGFDKHKGYGTAQHLEALQRYGVLPEHRR 181 Query: 200 TFRPLRNL 207 F P++ L Sbjct: 182 DFAPVKAL 189 >gi|50084434|ref|YP_045944.1| ribonuclease HII [Acinetobacter sp. ADP1] gi|73917594|sp|Q6FCT7|RNH2_ACIAD RecName: Full=Ribonuclease HII; Short=RNase HII gi|49530410|emb|CAG68122.1| RNAse HII [Acinetobacter sp. ADP1] Length = 189 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 84/182 (46%), Positives = 118/182 (64%), Gaps = 1/182 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DE GRG L G VV AA+ILDP+N G+NDSKK++ KKRE+L+ +I A+ SI+ Sbjct: 2 IAGVDEAGRGPLVGSVVAAAVILDPHNPIDGLNDSKKLTEKKREKLFVEIQEKALAWSIA 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A+H ID+ NI +AT A+ AV+ LQ+ P L+DG IP+ + A++ GD+ Sbjct: 62 EANHIEIDELNILQATFLAMRRAVDGLQIQPDKVLVDGNQIPKGISIHCEAIVGGDASHA 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RD+ M++ +KYP +GF H GYPT H Q I G HR ++ P+ Sbjct: 122 EISAASILAKVYRDQQMKLLDEKYPLFGFAKHKGYPTKAHFQAIAIHGVVDEHRRSYAPV 181 Query: 205 RN 206 R Sbjct: 182 RR 183 >gi|16759220|ref|NP_454837.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16763620|ref|NP_459235.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29140770|ref|NP_804112.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412503|ref|YP_149578.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167990117|ref|ZP_02571217.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168230539|ref|ZP_02655597.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168244998|ref|ZP_02669930.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194442556|ref|YP_002039470.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194447841|ref|YP_002044220.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469389|ref|ZP_03075373.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197262827|ref|ZP_03162901.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197361438|ref|YP_002141074.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243184|ref|YP_002214191.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388767|ref|ZP_03215379.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|207855748|ref|YP_002242399.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213163685|ref|ZP_03349395.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213418465|ref|ZP_03351531.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425956|ref|ZP_03358706.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580323|ref|ZP_03362149.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213648458|ref|ZP_03378511.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|238911296|ref|ZP_04655133.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289825702|ref|ZP_06544870.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|61234136|sp|P0A2C1|RNH2_SALTY RecName: Full=Ribonuclease HII; Short=RNase HII gi|61234141|sp|P0A2C2|RNH2_SALTI RecName: Full=Ribonuclease HII; Short=RNase HII gi|73917833|sp|Q5PD71|RNH2_SALPA RecName: Full=Ribonuclease HII; Short=RNase HII gi|238689913|sp|B5BAP0|RNH2_SALPK RecName: Full=Ribonuclease HII; Short=RNase HII gi|238690313|sp|B5FJ30|RNH2_SALDC RecName: Full=Ribonuclease HII; Short=RNase HII gi|238690458|sp|B5R422|RNH2_SALEP RecName: Full=Ribonuclease HII; Short=RNase HII gi|238690680|sp|B4TK58|RNH2_SALHS RecName: Full=Ribonuclease HII; Short=RNase HII gi|238693524|sp|B4SV12|RNH2_SALNS RecName: Full=Ribonuclease HII; Short=RNase HII gi|25289252|pir||AH0530 ribonuclease HII [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16418735|gb|AAL19194.1| RNAse HII [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16501511|emb|CAD08688.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi] gi|29136394|gb|AAO67961.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56126760|gb|AAV76266.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194401219|gb|ACF61441.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406145|gb|ACF66364.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455753|gb|EDX44592.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197092914|emb|CAR58343.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197241082|gb|EDY23702.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197937700|gb|ACH75033.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605865|gb|EDZ04410.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205331449|gb|EDZ18213.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335176|gb|EDZ21940.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336201|gb|EDZ22965.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|206707551|emb|CAR31825.1| Ribonuclease HII [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261245462|emb|CBG23252.1| RNase HII [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991921|gb|ACY86806.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156857|emb|CBW16333.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911200|dbj|BAJ35174.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222186|gb|EFX47258.1| Ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128550|gb|ADX15980.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326621934|gb|EGE28279.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332987182|gb|AEF06165.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 198 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 87/183 (47%), Positives = 112/183 (61%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LY++I A+ S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLSLYDEIKEKALSWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L + P LIDG PE LP + AV+KGDS Sbjct: 71 GRAEAHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPE-LPVPSMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H + + + G + HR +F P Sbjct: 130 AEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAQYGATAHHRRSFAP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|301155660|emb|CBW15128.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Haemophilus parainfluenzae T3T1] Length = 200 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 85/187 (45%), Positives = 115/187 (61%), Gaps = 1/187 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L +I A+ Sbjct: 8 EGYQLFAGVDEVGRGPLVGAVVTAAVILDPNNPIAGLADSKKLSEKKRLALAAEIKEKAL 67 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ A ID+ NI A++ A+ AV+ L++ P L+DG IP +L A AV+KG Sbjct: 68 AWAMGRAEPAEIDELNILHASMLAMERAVKALEIQPHFVLVDGNRIPPNLSLPAQAVVKG 127 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS+ I+AASI+AKV RD+ M KKYP+Y F H GYPT H + + E GP +R Sbjct: 128 DSLVAEISAASILAKVARDQEMEELDKKYPEYAFAQHKGYPTKLHLEKLAELGPLPEYRR 187 Query: 200 TFRPLRN 206 +F P++ Sbjct: 188 SFSPVKK 194 >gi|88857963|ref|ZP_01132605.1| RNAse HII [Pseudoalteromonas tunicata D2] gi|88819580|gb|EAR29393.1| RNAse HII [Pseudoalteromonas tunicata D2] Length = 194 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 81/187 (43%), Positives = 114/187 (60%), Gaps = 2/187 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 N +AG+DEVGRG L G VV AA+ILDP G+ DSKK++ KKR+ L +I A+ Sbjct: 7 NYQFIAGVDEVGRGPLVGDVVTAAVILDPTKPIVGLADSKKLTDKKRQALAIEIKEKALC 66 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I+ AS ID+ NI AT+ A+ AV L + +DG +P+ L A AV+KGD Sbjct: 67 YCIARASVAEIDELNILHATMLAMTRAVAGLSIPAEFVFVDGNRLPK-LSVPAQAVVKGD 125 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+ I+AASI+AKV RD M ++P+YGF H GYPT H + +++ G + HR + Sbjct: 126 SLVAEISAASILAKVARDDEMIALDAQFPEYGFAGHKGYPTKAHLEALQQHGVTEHHRKS 185 Query: 201 FRPLRNL 207 F+P++ L Sbjct: 186 FKPVKIL 192 >gi|324112406|gb|EGC06383.1| ribonuclease HII [Escherichia fergusonii B253] gi|325496115|gb|EGC93974.1| ribonuclease HII [Escherichia fergusonii ECD227] Length = 198 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 87/183 (47%), Positives = 111/183 (60%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L + P LIDG P+ LP + AV+KGDS Sbjct: 71 GRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P Sbjct: 130 PEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|91209253|ref|YP_539239.1| ribonuclease HII [Escherichia coli UTI89] gi|117622468|ref|YP_851381.1| ribonuclease HII [Escherichia coli APEC O1] gi|218557124|ref|YP_002390037.1| ribonuclease HII [Escherichia coli S88] gi|237704342|ref|ZP_04534823.1| ribonuclease HII [Escherichia sp. 3_2_53FAA] gi|122424950|sp|Q1RG06|RNH2_ECOUT RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225184|sp|A1A7M7|RNH2_ECOK1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|226736817|sp|B7MBG4|RNH2_ECO45 RecName: Full=Ribonuclease HII; Short=RNase HII gi|91070827|gb|ABE05708.1| RNAse HII, degrades RNA of DNA-RNA hybrids [Escherichia coli UTI89] gi|115511592|gb|ABI99666.1| ribonuclease HII [Escherichia coli APEC O1] gi|218363893|emb|CAR01558.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli S88] gi|226902254|gb|EEH88513.1| ribonuclease HII [Escherichia sp. 3_2_53FAA] gi|294490169|gb|ADE88925.1| ribonuclease HII [Escherichia coli IHE3034] gi|307629759|gb|ADN74063.1| ribonuclease HII [Escherichia coli UM146] gi|315285250|gb|EFU44695.1| ribonuclease HII [Escherichia coli MS 110-3] gi|323950818|gb|EGB46695.1| ribonuclease HII [Escherichia coli H252] gi|323955144|gb|EGB50919.1| ribonuclease HII [Escherichia coli H263] Length = 198 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLVLCEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ LP + AV+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|89098661|ref|ZP_01171543.1| ribonuclease HII [Bacillus sp. NRRL B-14911] gi|89086623|gb|EAR65742.1| ribonuclease HII [Bacillus sp. NRRL B-14911] Length = 255 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 84/195 (43%), Positives = 121/195 (62%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +++ +AG DE GRG LAGPV+ AA+IL G++DSKK+S KR+E Y+ Sbjct: 62 FERRLKKSGWTMIAGTDEAGRGPLAGPVIAAAVILPEGFYLPGLDDSKKLSEAKRDEFYK 121 Query: 74 KITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I S A + I S ID+ NI +A+ A+ A+ ++ P L D + D+P Q Sbjct: 122 EIMSGASAVGIGRISAGEIDRINILQASKKAMLLALADMGSTPDYLLTDAVDL--DVPYQ 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A AVIKGDS S++IAAAS+IAKVTRDR MR ++YP YGF ++GY T +H + I++ G Sbjct: 180 AEAVIKGDSKSVTIAAASVIAKVTRDRYMRELDEQYPHYGFGRNMGYGTRQHLEAIEKHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++ + Sbjct: 240 IINEHRKSFAPIKGM 254 >gi|295098672|emb|CBK87762.1| RNase HII [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 198 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 88/183 (48%), Positives = 112/183 (61%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L+++I A+ S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALFDEIKEKALAWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID NI AT+ A+ AV L+++P LIDG P LP + AV+KGDS Sbjct: 71 GRAEPDEIDDLNILHATMLAMQRAVAGLKIVPEYVLIDGNRCPA-LPMPSMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASIIAKVTRD M YP YGF H GYPTA H + + E G + HR +F P Sbjct: 130 AEISAASIIAKVTRDAEMAALDLTYPAYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|148253836|ref|YP_001238421.1| ribonuclease HII [Bradyrhizobium sp. BTAi1] gi|146406009|gb|ABQ34515.1| RNase HII [Bradyrhizobium sp. BTAi1] Length = 292 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 1/195 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + ++ +WPVAG DE GRG LAGPVV AA+ILDPN IP G++DSK++S ++RE Sbjct: 65 PSFRRERALLKQGIWPVAGCDEAGRGPLAGPVVAAAVILDPNRIPKGLDDSKRLSAEQRE 124 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L++KI ++ +++ AS ID+ NI +A+L A+ AV L P+ +DGR D+ Sbjct: 125 ALFDKICKTSAFAVAFASPARIDRDNILRASLWALSRAVRALPEAPKHVFVDGRD-RIDV 183 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C AVI GD + +SIAAASI+AKVTRDRLM + P YGF+ H GY +H + Sbjct: 184 DCHCEAVIGGDGLVMSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYGVPEHLAALD 243 Query: 190 EKGPSCIHRLTFRPL 204 GPS HR F P+ Sbjct: 244 RLGPSVHHRSLFAPV 258 >gi|319744987|gb|EFV97315.1| ribonuclease HII [Streptococcus agalactiae ATCC 13813] Length = 254 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 89/209 (42%), Positives = 125/209 (59%), Gaps = 7/209 (3%) Query: 4 NSIPERPHFE----LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIND 59 + + E E E + +++ +AGIDEVGRG LAGPVV AA+IL PN +ND Sbjct: 47 SDLDEEARLEQMLVYEKKLYIEHINLIAGIDEVGRGPLAGPVVAAAVILPPNCKIKHLND 106 Query: 60 SKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 SKKI KK +E+Y+ I A+ + I Q ID NI++AT A+ AV +L V P Sbjct: 107 SKKIPKKKHQEIYQNILDQALAVGIGIQDSQCIDDINIYEATKHAMIDAVSHLSVAPEHL 166 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 LID + DL +IKGD+ SLSIAAASI+AKVTRD++M YP Y F + G Sbjct: 167 LIDAMVL--DLSIPQTKIIKGDANSLSIAAASIVAKVTRDKIMSDYDSTYPGYAFSKNAG 224 Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 Y T +H + +++ G + IHR +F P++++ Sbjct: 225 YGTKEHLEGLQKYGITPIHRKSFEPIKSM 253 >gi|189043614|sp|A4YPP8|RNH2_BRASO RecName: Full=Ribonuclease HII; Short=RNase HII Length = 277 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 1/195 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + ++ +WPVAG DE GRG LAGPVV AA+ILDPN IP G++DSK++S ++RE Sbjct: 50 PSFRRERALLKQGIWPVAGCDEAGRGPLAGPVVAAAVILDPNRIPKGLDDSKRLSAEQRE 109 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L++KI ++ +++ AS ID+ NI +A+L A+ AV L P+ +DGR D+ Sbjct: 110 ALFDKICKTSAFAVAYASPTRIDRDNILRASLWALSRAVRALPEAPKHVFVDGRD-RIDV 168 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C AVI GD + +SIAAASI+AKVTRDRLM + P YGF+ H GY +H + Sbjct: 169 DCNCEAVIGGDGLVMSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYAVPEHLAALD 228 Query: 190 EKGPSCIHRLTFRPL 204 GPS HR F P+ Sbjct: 229 RLGPSVHHRSLFAPV 243 >gi|22537172|ref|NP_688023.1| ribonuclease HII [Streptococcus agalactiae 2603V/R] gi|25011101|ref|NP_735496.1| ribonuclease HII [Streptococcus agalactiae NEM316] gi|76798272|ref|ZP_00780520.1| ribonuclease HII [Streptococcus agalactiae 18RS21] gi|77410447|ref|ZP_00786808.1| ribonuclease HII [Streptococcus agalactiae CJB111] gi|77413753|ref|ZP_00789934.1| ribonuclease HII [Streptococcus agalactiae 515] gi|39932400|sp|Q8DZT5|RNH2_STRA5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|39932402|sp|Q8E5I2|RNH2_STRA3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|22534036|gb|AAM99895.1|AE014238_8 ribonuclease HII [Streptococcus agalactiae 2603V/R] gi|23095500|emb|CAD46706.1| Unknown [Streptococcus agalactiae NEM316] gi|76586383|gb|EAO62893.1| ribonuclease HII [Streptococcus agalactiae 18RS21] gi|77160182|gb|EAO71312.1| ribonuclease HII [Streptococcus agalactiae 515] gi|77163395|gb|EAO74345.1| ribonuclease HII [Streptococcus agalactiae CJB111] Length = 253 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 89/209 (42%), Positives = 125/209 (59%), Gaps = 7/209 (3%) Query: 4 NSIPERPHFE----LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIND 59 + + E E E + +++ +AGIDEVGRG LAGPVV AA+IL PN +ND Sbjct: 46 SDLDEEARLEQMLVYEKKLYIEHINLIAGIDEVGRGPLAGPVVAAAVILPPNCKIKHLND 105 Query: 60 SKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 SKKI KK +E+Y+ I A+ + I Q ID NI++AT A+ AV +L V P Sbjct: 106 SKKIPKKKHQEIYQNILDQALAVGIGIQDSQCIDDINIYEATKHAMIDAVSHLSVAPEHL 165 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 LID + DL +IKGD+ SLSIAAASI+AKVTRD++M YP Y F + G Sbjct: 166 LIDAMVL--DLSIPQTKIIKGDANSLSIAAASIVAKVTRDKIMSDYDSTYPGYAFSKNAG 223 Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 Y T +H + +++ G + IHR +F P++++ Sbjct: 224 YGTKEHLEGLQKYGITPIHRKSFEPIKSM 252 >gi|260596603|ref|YP_003209174.1| ribonuclease HII [Cronobacter turicensis z3032] gi|260215780|emb|CBA28205.1| Ribonuclease HII [Cronobacter turicensis z3032] Length = 198 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 89/183 (48%), Positives = 111/183 (60%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP N G+ DSKK+S K+R L+++I AI S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPLNPIVGLADSKKLSEKRRLALFDEIKEKAIAWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L V P LIDG P LP + AV+KGDS Sbjct: 71 GRAEPHEIDELNILHATMLAMQRAVAGLAVTPEYVLIDGNRCPA-LPMPSMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P Sbjct: 130 AEISAASILAKVTRDAEMAELDLTFPQYGFAQHKGYPTAFHLERLAEHGATAHHRRSFAP 189 Query: 204 LRN 206 +R Sbjct: 190 VRR 192 >gi|189043612|sp|B1MZ17|RNH2_LEUCK RecName: Full=Ribonuclease HII; Short=RNase HII Length = 260 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 84/197 (42%), Positives = 116/197 (58%), Gaps = 3/197 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E K + VAG+DEVGRG LAGPVV AA+IL + + DSK+++ KRE+ Sbjct: 58 RFNFERDYWLKGVELVAGVDEVGRGPLAGPVVAAAVILPHDFNIVDVIDSKQVAQHKREQ 117 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LYE I A+ I I S + ID+ NI++A A+ A+ NL P++ LID + L Sbjct: 118 LYEIILDQAVSIGIGSVDAKTIDEINIYEAARQAMTEAINNLAPQPQALLIDAMQVY--L 175 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++IKGD+ S SI AASI+AKV RD++M K YP Y F + GY T KH I Sbjct: 176 DITQQSLIKGDARSNSIGAASIVAKVIRDKMMTDYDKVYPGYDFAQNAGYGTKKHLAGID 235 Query: 190 EKGPSCIHRLTFRPLRN 206 + G + IHR +F+P+ + Sbjct: 236 KLGVTPIHRRSFQPVHD 252 >gi|313892676|ref|ZP_07826259.1| ribonuclease HII [Veillonella sp. oral taxon 158 str. F0412] gi|313442767|gb|EFR61176.1| ribonuclease HII [Veillonella sp. oral taxon 158 str. F0412] Length = 265 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 87/197 (44%), Positives = 131/197 (66%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ E M ++ M+ VAG+DEVGRG +AGPV VAA+IL P + G+NDSKK++ +KRE L Sbjct: 63 YDYEGMFYDQGMYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREVL 122 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ +S S + ID+ NI++AT A+Y A+ L V + + D +P DL Sbjct: 123 YDIIMKEAVAVSCISYGPEKIDELNIYEATRQAMYEAIRTLSVPAEAVVADAMKLP-DLT 181 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGDS S +IA ASIIAKVTRDR M+ ++YP YGF H GY T H++ +++ Sbjct: 182 IPVESIIKGDSKSANIAVASIIAKVTRDRYMKQLDEEYPGYGFGIHKGYYTELHKEAVEQ 241 Query: 191 KGPSCIHRLTFRPLRNL 207 +G + +HR +F P++++ Sbjct: 242 QGVTPLHRKSFEPIKSI 258 >gi|269836504|ref|YP_003318732.1| Ribonuclease H [Sphaerobacter thermophilus DSM 20745] gi|269785767|gb|ACZ37910.1| Ribonuclease H [Sphaerobacter thermophilus DSM 20745] Length = 233 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 88/200 (44%), Positives = 126/200 (63%), Gaps = 3/200 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKR 68 P +EA + + + VAG+DEVGRG +AGPVV AA IL P G+ DSK +S ++R Sbjct: 25 PSIHIEAELWARGLRLVAGVDEVGRGCVAGPVVAAACILPPGIEDIPGVRDSKTLSARQR 84 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E L E+I A+ I + +AS + ID++NI +A+ A+ A+ L L DGR +PE Sbjct: 85 ERLAEEIRRVALGIGLGAASRREIDQYNIRQASALAMRRALARLGAW-DFVLYDGRPLPE 143 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 P + AV+KGD+ LSIA ASI+AKVTRD LM +++P+YG++ + GY TA+H Sbjct: 144 LDPERTMAVVKGDASCLSIACASILAKVTRDALMARLARRHPEYGWERNAGYGTAEHLDA 203 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 + GP+ HR TF P+R+L Sbjct: 204 LLRVGPTPHHRRTFAPVRDL 223 >gi|146339063|ref|YP_001204111.1| ribonuclease HII [Bradyrhizobium sp. ORS278] gi|146191869|emb|CAL75874.1| Ribonuclease HII [Bradyrhizobium sp. ORS278] Length = 289 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 1/195 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + ++ +WPVAG DE GRG LAGPVV AA+ILDPN IP G++DSK++S ++RE Sbjct: 62 PSFRRERALLKQGIWPVAGCDEAGRGPLAGPVVAAAVILDPNRIPKGLDDSKRLSAEQRE 121 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L++KI ++ +++ AS ID+ NI +A+L A+ AV L P+ +DGR D+ Sbjct: 122 ALFDKICKTSAFAVAYASPTRIDRDNILRASLWALSRAVRALPEAPKHVFVDGRD-RIDV 180 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C AVI GD + +SIAAASI+AKVTRDRLM + P YGF+ H GY +H + Sbjct: 181 DCNCEAVIGGDGLVMSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYAVPEHLAALD 240 Query: 190 EKGPSCIHRLTFRPL 204 GPS HR F P+ Sbjct: 241 RLGPSVHHRSLFAPV 255 >gi|322373051|ref|ZP_08047587.1| ribonuclease HII [Streptococcus sp. C150] gi|321278093|gb|EFX55162.1| ribonuclease HII [Streptococcus sp. C150] Length = 260 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 84/197 (42%), Positives = 120/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + + +AG+DEVGRG LAGPVV AA+IL G+NDSKKI K E + Sbjct: 63 LSYEKSLYAQGVELIAGVDEVGRGPLAGPVVAAAVILPKLCKIKGLNDSKKIPKSKHEAI 122 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+++ A+ + I + ID NI++AT A+ A+E L P LID S+ DLP Sbjct: 123 YKQVMKEAVAVGIGIKDNHVIDDVNIYEATKLAMAEAIEKLSPKPEHLLIDAMSL--DLP 180 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD++M +++P Y FD + GY T H I + Sbjct: 181 IGQTSIIKGDANSLSIAAASIVAKVTRDKMMADYDQEFPGYAFDQNAGYGTKNHLSGIDK 240 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 241 FGVTPIHRRSFEPIKSI 257 >gi|225019936|ref|ZP_03709128.1| hypothetical protein CLOSTMETH_03890 [Clostridium methylpentosum DSM 5476] gi|224947300|gb|EEG28509.1| hypothetical protein CLOSTMETH_03890 [Clostridium methylpentosum DSM 5476] Length = 324 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 114/184 (61%), Gaps = 2/184 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 RE + G+DE GRG LAGPV AA IL + GINDSKK++ KKRE LYE+I Sbjct: 8 REAGAEVLCGVDEAGRGPLAGPVYAAACILPLDAEIEGINDSKKLTEKKREALYEQIRER 67 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A+ +++AS + ID NI +AT A+ AVE L++ P LIDG P D+ + VI Sbjct: 68 ALDYCVATASVEEIDSINILQATFLAMRRAVEGLRLRPGLVLIDGNKNP-DVGVHSRCVI 126 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD+ S +IAAASI+AKV RDR M+ +YP+Y F H GY T H + + E G S +H Sbjct: 127 KGDATSANIAAASILAKVERDRCMQALDAEYPEYCFAKHKGYGTKLHTEKLLEYGISPVH 186 Query: 198 RLTF 201 R +F Sbjct: 187 RRSF 190 >gi|261866967|ref|YP_003254889.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412299|gb|ACX81670.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D11S-1] Length = 199 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 81/195 (41%), Positives = 117/195 (60%), Gaps = 1/195 (0%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 ++ + +AG+DEVGRG L G VV AA+ILDP G+ DSK +S KKR L E Sbjct: 1 MDKFTYPQGYELIAGVDEVGRGPLVGAVVTAAVILDPKQPIEGLADSKTLSEKKRLLLAE 60 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I A+ ++ A ID+ NI A++ A+ A+++L++ P L+DG IP +L Sbjct: 61 EIKQKALAWALGRAEPHEIDELNILHASMLAMERAIKHLKIRPHFVLVDGNRIPPNLMIP 120 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A AV+KGD + I+AASI+AKV RD+ M + KKYP Y F H GYPT H + ++E G Sbjct: 121 AQAVVKGDVLVPEISAASILAKVARDQEMIVLDKKYPHYAFAKHKGYPTKLHLEKLREFG 180 Query: 193 PSCIHRLTFRPLRNL 207 +R +F P++ L Sbjct: 181 VLPEYRRSFAPVKKL 195 >gi|291563277|emb|CBL42093.1| Ribonuclease HII [butyrate-producing bacterium SS3/4] Length = 214 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 85/195 (43%), Positives = 115/195 (58%), Gaps = 2/195 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 ER E + ++ + GIDE GRG LAGPV A IL + +NDSKK+S + Sbjct: 16 ERLSLMREFERQYEDCAFICGIDEAGRGPLAGPVAAGAAILPKDCRILYLNDSKKLSESR 75 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 REEL+ +I AI S+ + ID+ NI +AT +A+ A+ L +P+ L D +IP Sbjct: 76 REELFLEIKEKAIAWSVGIVGPERIDEINILQATYEAMRQAISKLDPVPQVLLNDAVTIP 135 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + +IKGD+ S+SIAAASI+AKVTRD +M K+YP+YGF H GY T H Sbjct: 136 -GVAIPQVPIIKGDAKSVSIAAASILAKVTRDHMMEEYDKEYPEYGFAKHKGYGTPAHIT 194 Query: 187 VIKEKGPSCIHRLTF 201 +KE GP+ IHR TF Sbjct: 195 ALKEFGPTPIHRRTF 209 >gi|313904190|ref|ZP_07837569.1| Ribonuclease H [Eubacterium cellulosolvens 6] gi|313470992|gb|EFR66315.1| Ribonuclease H [Eubacterium cellulosolvens 6] Length = 218 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 91/190 (47%), Positives = 118/190 (62%), Gaps = 4/190 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E E + G+DEVGRG LAGPV AA+IL + INDSKK+S K+REELY Sbjct: 27 EFEKAHPEAEY--ICGVDEVGRGPLAGPVTTAAVILPKDARILYINDSKKLSEKRREELY 84 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I AI +S+ S + ID+ NI +ATL+++ +V L V P +D +IP + Sbjct: 85 DIIMEEAIAVSVKLNSWERIDEINILQATLESMRESVNTLDVRPDLVFVDAVTIP-GIDI 143 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S SIAAASIIAKVTRDR+M+ + YP Y F S+ GY T KH + +KE Sbjct: 144 PQIPIIKGDAKSQSIAAASIIAKVTRDRMMKEYDRLYPAYDFASNKGYGTKKHIEALKEF 203 Query: 192 GPSCIHRLTF 201 GP IHR TF Sbjct: 204 GPCPIHRRTF 213 >gi|300902002|ref|ZP_07120029.1| ribonuclease HII [Escherichia coli MS 84-1] gi|301305319|ref|ZP_07211415.1| ribonuclease HII [Escherichia coli MS 124-1] gi|300405888|gb|EFJ89426.1| ribonuclease HII [Escherichia coli MS 84-1] gi|300839424|gb|EFK67184.1| ribonuclease HII [Escherichia coli MS 124-1] gi|315254985|gb|EFU34953.1| ribonuclease HII [Escherichia coli MS 85-1] Length = 198 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 88/183 (48%), Positives = 111/183 (60%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L + P LIDG P+ LP A AV+KGDS Sbjct: 71 GRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P Sbjct: 130 PEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|225389108|ref|ZP_03758832.1| hypothetical protein CLOSTASPAR_02854 [Clostridium asparagiforme DSM 15981] gi|225044826|gb|EEG55072.1| hypothetical protein CLOSTASPAR_02854 [Clostridium asparagiforme DSM 15981] Length = 217 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 89/205 (43%), Positives = 119/205 (58%), Gaps = 8/205 (3%) Query: 8 ERPHFELEAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 E+ LE M +N + + GIDE GRG LAGPV A+IL + +NDSKK+ Sbjct: 11 EKELARLEQMREYENTYAACAMICGIDEAGRGPLAGPVAAGAVILPKDCTLLHLNDSKKL 70 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S K+REEL+ +I A+ + + ID+ NI +AT +A+ A+ L V P L D Sbjct: 71 SEKRREELFVQIKEQAVAWCVGIVGPERIDEINILQATYEAMRQAIAGLGVKPDILLNDA 130 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 IP + +IKGD+ S+SIAAASI+AKVTRD +M + +PDY F H GY TA Sbjct: 131 VEIP-GVDIMQVPIIKGDAKSVSIAAASILAKVTRDHMMAEYDQLFPDYSFAKHKGYGTA 189 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 H Q IKE GP IHR +F +RN+ Sbjct: 190 AHIQAIKELGPCPIHRRSF--IRNI 212 >gi|90407916|ref|ZP_01216091.1| ribonuclease HII [Psychromonas sp. CNPT3] gi|90311007|gb|EAS39117.1| ribonuclease HII [Psychromonas sp. CNPT3] Length = 204 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 113/184 (61%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILD NN G+ DSKK+S KK L+ +I A+ ISI Sbjct: 18 YIAGVDEVGRGPLVGDVVTAAVILDANNPIEGLADSKKLSEKKLALLFTEIQEKALCISI 77 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 AS ID NI +AT+ A+ AV+ L + P IDG P L A++KGD+ Sbjct: 78 GRASPTEIDDINILQATMLAMQRAVQGLSLQPNFVFIDGNRCPT-LNMACEAIVKGDARV 136 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASIIAKVTRD MR +YP YGF H GYPT H + +++ GP +R +F+P Sbjct: 137 AEISAASIIAKVTRDGEMRELDARYPQYGFAKHKGYPTKAHFEALEKYGPIDEYRKSFKP 196 Query: 204 LRNL 207 ++ + Sbjct: 197 VKKV 200 >gi|325696515|gb|EGD38405.1| ribonuclease HII [Streptococcus sanguinis SK160] Length = 254 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 124/197 (62%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +++ Sbjct: 58 LRYEKELYKADYQAIAGIDEVGRGPLAGPVVAAAVILPPECKIKGLNDSKKIPKKKHQDI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A+ + + +++ ID+ NI++AT A+ A+ L + P LID + D+P Sbjct: 118 YQAVLDKALAVGVGLMNNEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKLDVDIP 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM KK+P Y F + GY T H Q ++ Sbjct: 178 --QESIIKGDANSLSIAAASIVAKVTRDKLMADYDKKFPGYDFAKNAGYGTRSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 SGVTPIHRKTFEPIKSM 252 >gi|237729489|ref|ZP_04559970.1| ribonuclease HII [Citrobacter sp. 30_2] gi|226909218|gb|EEH95136.1| ribonuclease HII [Citrobacter sp. 30_2] Length = 198 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 85/183 (46%), Positives = 111/183 (60%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L+++I A+ S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIIGLNDSKKLSEKRRLALFDEIKEKALSWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI +AT+ A+ AV L + P LIDG P LP + AV+KGDS Sbjct: 71 GRAEPHEIDELNILQATMLAMQRAVAGLHIAPEYVLIDGNRCPA-LPVPSMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H + + G + HR +F P Sbjct: 130 AEISAASILAKVTRDAEMAALDTVFPQYGFAQHKGYPTAFHLEKLALHGATEHHRRSFGP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|319941636|ref|ZP_08015960.1| ribonuclease HII [Sutterella wadsworthensis 3_1_45B] gi|319804866|gb|EFW01720.1| ribonuclease HII [Sutterella wadsworthensis 3_1_45B] Length = 245 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 86/187 (45%), Positives = 110/187 (58%), Gaps = 6/187 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG LAGPV AA+ILDP N G+ DSKK+S KKRE L I A+ I Sbjct: 37 AGVDEAGRGPLAGPVCAAAVILDPENPIEGLADSKKLSAKKREALAPIIRERALAWGIGW 96 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQ-----VIPRSALIDGRSIPEDLPCQAFAVIKGD 140 A+ + ID+ NI AT A+ AV L+ V P LIDG P LPC + ++KGD Sbjct: 97 ATVEEIDRVNILNATYLAMERAVATLKSRSGSVTPEYILIDGNRRPPHLPCMSDTIVKGD 156 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 +I+AASI+AK RD M +K+P YGF H GY TA+H +K GP HR T Sbjct: 157 DKVPAISAASILAKTARDHRMAELDQKWPAYGFAKHAGYGTAQHLDALKRLGPCPEHRTT 216 Query: 201 FRPLRNL 207 F P++++ Sbjct: 217 FEPIKSM 223 >gi|209518722|ref|ZP_03267538.1| Ribonuclease H [Burkholderia sp. H160] gi|209500836|gb|EEA00876.1| Ribonuclease H [Burkholderia sp. H160] Length = 249 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 91/189 (48%), Positives = 119/189 (62%), Gaps = 3/189 (1%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSS 78 E V G+DE GRG LAGPVV AA+I DP G++DSK +S KRE LY+KI Sbjct: 26 ESAEDIVCGVDEAGRGPLAGPVVAAAVIFDPAKPMIRGLDDSKALSANKREALYDKIVER 85 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A+ I+SAS + ID NI AT+ A+ AVE L V+P +DG P L ++ AVI Sbjct: 86 ALAYCIASASVEEIDSLNILHATMLAMKRAVEGLSVVPTLVKVDGNRCPT-LSIRSEAVI 144 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD++ SI+AASI+AKVTRDR++ H+ YP YGFD+H GY T +H ++E GP H Sbjct: 145 GGDALVKSISAASILAKVTRDRMLVELHQAYPMYGFDAHAGYGTPQHLAALREHGPCEHH 204 Query: 198 RLTFRPLRN 206 R +F P+R Sbjct: 205 RRSFAPVRE 213 >gi|170021464|ref|YP_001726418.1| ribonuclease HII [Escherichia coli ATCC 8739] gi|194439910|ref|ZP_03071972.1| ribonuclease HII [Escherichia coli 101-1] gi|253774790|ref|YP_003037621.1| ribonuclease HII [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160302|ref|YP_003043410.1| ribonuclease HII [Escherichia coli B str. REL606] gi|300932137|ref|ZP_07147422.1| ribonuclease HII [Escherichia coli MS 187-1] gi|312970284|ref|ZP_07784466.1| ribonuclease HII family protein [Escherichia coli 1827-70] gi|189043595|sp|B1IQF8|RNH2_ECOLC RecName: Full=Ribonuclease HII; Short=RNase HII gi|169756392|gb|ACA79091.1| Ribonuclease H [Escherichia coli ATCC 8739] gi|194421156|gb|EDX37181.1| ribonuclease HII [Escherichia coli 101-1] gi|242376014|emb|CAQ30697.1| RNAse HII, degrades RNA of DNA-RNA hybrids [Escherichia coli BL21(DE3)] gi|253325834|gb|ACT30436.1| Ribonuclease H [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972203|gb|ACT37874.1| ribonuclease HII [Escherichia coli B str. REL606] gi|253976412|gb|ACT42082.1| ribonuclease HII [Escherichia coli BL21(DE3)] gi|300460113|gb|EFK23606.1| ribonuclease HII [Escherichia coli MS 187-1] gi|310337782|gb|EFQ02893.1| ribonuclease HII family protein [Escherichia coli 1827-70] gi|323959944|gb|EGB55591.1| ribonuclease HII [Escherichia coli H489] Length = 198 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 87/183 (47%), Positives = 111/183 (60%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L + P LIDG P+ LP + AV+KGDS Sbjct: 71 GRAEPYEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P Sbjct: 130 PEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|239623747|ref|ZP_04666778.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521778|gb|EEQ61644.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 219 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 97/205 (47%), Positives = 122/205 (59%), Gaps = 8/205 (3%) Query: 8 ERPHFELEAMV-REKNMW---PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 E+ LEAM EK + GIDE GRG LAGPV A+IL + +NDSKK+ Sbjct: 12 EKELARLEAMTEYEKEYGSSAFICGIDEAGRGPLAGPVAAGAVILPKDCRILYLNDSKKL 71 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S K+REEL+E+I A+ S+ A+ ID+ NI +AT +A+ AV L V P L D Sbjct: 72 SEKRREELFEEIKEKAVAWSVGIATPARIDEINILQATYEAMREAVGQLTVKPDVLLNDA 131 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 +IP DL +IKGD+ SLSIAAASI+AKVTRD +M + +P YGF H GY TA Sbjct: 132 VTIP-DLDILQVPIIKGDAKSLSIAAASILAKVTRDHMMAGYEEMFPGYGFAKHKGYGTA 190 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 H I+E GP IHR TF +RN Sbjct: 191 AHIAAIRELGPCPIHRRTF--IRNF 213 >gi|110677703|ref|YP_680710.1| ribonuclease HII [Roseobacter denitrificans OCh 114] gi|122973124|sp|Q16DB9|RNH2_ROSDO RecName: Full=Ribonuclease HII; Short=RNase HII gi|109453819|gb|ABG30024.1| ribonuclease HII [Roseobacter denitrificans OCh 114] Length = 198 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 83/186 (44%), Positives = 127/186 (68%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81 VAG+DEVGRG LAGPV AA++LDP NIP G+NDSK++S K+R L + + SSA I Sbjct: 4 GARRVAGVDEVGRGPLAGPVTAAAVVLDPANIPEGLNDSKQLSVKRRNLLGDALASSADI 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S+ AS + I++HNI +A+ A+ A+ L++ P LIDG +P+ L +A V+KGD+ Sbjct: 64 SVGHASVEEIEQHNILRASHMAMLRALAGLRLRPDFVLIDGAMVPQGLNLRAQPVVKGDT 123 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 LSI+AASIIAK+ RD++M +++P YG+++++GY + H ++ G + HR TF Sbjct: 124 RCLSISAASIIAKIARDKIMVDLAQQHPGYGWETNMGYGSKSHISALRNLGVTPHHRRTF 183 Query: 202 RPLRNL 207 +P+ ++ Sbjct: 184 KPVHHM 189 >gi|91792925|ref|YP_562576.1| ribonuclease H [Shewanella denitrificans OS217] gi|123356872|sp|Q12NX3|RNH2_SHEDO RecName: Full=Ribonuclease HII; Short=RNase HII gi|91714927|gb|ABE54853.1| Ribonuclease H [Shewanella denitrificans OS217] Length = 214 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 83/185 (44%), Positives = 114/185 (61%), Gaps = 4/185 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG L G VV AA+ILDPN G+ DSKK+S K+ + LY +I A+ +S Sbjct: 24 GLVAGVDEVGRGPLIGDVVTAAVILDPNRPIAGLMDSKKLSEKRLQALYLEIMDKALAVS 83 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE---DLPCQAFAVIKG 139 + A+ ID+ NI AT+ A+ AV L + P L+DG +PE + + A+IKG Sbjct: 84 VGRANPSEIDELNILHATMLAMSRAVAGLNIKPERVLVDGNRLPEFALNAEVERHAIIKG 143 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D + +I+AASIIAKVTRD M +YP+YGF H GYPT H + + + G HR Sbjct: 144 DGLVPAISAASIIAKVTRDEEMLQLDARYPEYGFAKHKGYPTKTHFEALAQFGVLPEHRK 203 Query: 200 TFRPL 204 +F+P+ Sbjct: 204 SFKPV 208 >gi|317131439|ref|YP_004090753.1| Ribonuclease H [Ethanoligenens harbinense YUAN-3] gi|315469418|gb|ADU26022.1| Ribonuclease H [Ethanoligenens harbinense YUAN-3] Length = 207 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 119/199 (59%), Gaps = 4/199 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 E + + V G+DE GRG LAGPV AA+IL + G+NDSKK+S K+RE Sbjct: 3 WLTYEHALYAQGFGTVCGVDEAGRGPLAGPVFAAAVILPRGVMIEGVNDSKKLSEKRREI 62 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+++I A+ +++SA + I ++NI A+L A+ AV +LQ+ ++AL+DG P L Sbjct: 63 LFDRIRDQALACAVASADEREIAEYNILGASLLAMRRAVSSLQIPAQAALVDGNRDPL-L 121 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + V++GD+ IAAASI+AKV+RDR M KYP YGF H GYPT H + I Sbjct: 122 TIPSTCVVRGDARCACIAAASILAKVSRDRYMLELDAKYPQYGFAKHKGYPTRAHYEAIL 181 Query: 190 EKGPSCIHRLTFRPLRNLS 208 GP HRL F LRNL Sbjct: 182 RYGPCPAHRLYF--LRNLE 198 >gi|153854846|ref|ZP_01996069.1| hypothetical protein DORLON_02074 [Dorea longicatena DSM 13814] gi|149752548|gb|EDM62479.1| hypothetical protein DORLON_02074 [Dorea longicatena DSM 13814] Length = 194 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 91/180 (50%), Positives = 114/180 (63%), Gaps = 2/180 (1%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII- 81 + GIDEVGRG AGPVV A+IL ++ +NDSKK+S KKRE LY++I A+ Sbjct: 11 CQYICGIDEVGRGPFAGPVVAGAVILPKDDPILYLNDSKKLSEKKREALYDEIMERAVAT 70 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I S ID+ NI +AT +A+ A+ NL+V P L D +IPE + +IKGD+ Sbjct: 71 GIGVVSPARIDEINILQATYEAMRMAIGNLKVQPDLLLNDAVTIPE-VEIPQVPIIKGDA 129 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 S+SIAAASIIAKVTRDRLM K P Y F S+ GY T KH + +KE GPS IHR TF Sbjct: 130 KSVSIAAASIIAKVTRDRLMVEYDKVLPGYDFASNKGYGTKKHIEGLKELGPSPIHRRTF 189 >gi|82542782|ref|YP_406729.1| ribonuclease HII [Shigella boydii Sb227] gi|97189266|sp|Q325V7|RNH2_SHIBS RecName: Full=Ribonuclease HII; Short=RNase HII gi|81244193|gb|ABB64901.1| RNAse HII [Shigella boydii Sb227] gi|332098751|gb|EGJ03711.1| ribonuclease HII family protein [Shigella boydii 3594-74] Length = 198 Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 110/184 (59%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ LP A V+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPAMVVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|55820934|ref|YP_139376.1| ribonuclease HII [Streptococcus thermophilus LMG 18311] gi|55822856|ref|YP_141297.1| ribonuclease HII [Streptococcus thermophilus CNRZ1066] gi|81559468|sp|Q5M021|RNH2_STRT1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|81560665|sp|Q5M4N6|RNH2_STRT2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|55736919|gb|AAV60561.1| ribonuclease HII [Streptococcus thermophilus LMG 18311] gi|55738841|gb|AAV62482.1| ribonuclease HII [Streptococcus thermophilus CNRZ1066] Length = 260 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 82/195 (42%), Positives = 120/195 (61%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + + +AG+DEVGRG LAGPVV AA+IL G+NDSKKI K E +Y Sbjct: 65 YEKSLYARGIELIAGVDEVGRGPLAGPVVAAAVILPKLCKIKGLNDSKKIPKSKHEAIYN 124 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 ++ A+ + I + ID NI++AT A+ A+E L P LID ++ DLP + Sbjct: 125 QVMKEAVAVGIGIKDNYVIDDVNIYEATKLAMIEAIEKLNPQPEHLLIDAMNL--DLPIE 182 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ SLSIAAASI+AKVTRD++M +++P Y F + GY T +H I + G Sbjct: 183 QTSIIKGDANSLSIAAASIVAKVTRDKMMADYEQEFPGYAFAKNAGYGTKEHLSGIDKFG 242 Query: 193 PSCIHRLTFRPLRNL 207 + IHR +F P++++ Sbjct: 243 VTPIHRRSFEPIKSI 257 >gi|184155373|ref|YP_001843713.1| ribonuclease HII [Lactobacillus fermentum IFO 3956] gi|238692975|sp|B2GC51|RNH2_LACF3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|183226717|dbj|BAG27233.1| ribonuclease HII [Lactobacillus fermentum IFO 3956] gi|299783202|gb|ADJ41200.1| Ribonuclease HII (RNase HII) [Lactobacillus fermentum CECT 5716] Length = 256 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 84/195 (43%), Positives = 119/195 (61%), Gaps = 3/195 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E + + VAGIDEVGRG LAGPVV A++LD G+ DSK++S +RE+ Sbjct: 59 RFRYENQLWQAGHQYVAGIDEVGRGPLAGPVVTCAVVLDSQFDLVGVTDSKQLSRHEREQ 118 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY +I A+ +S++ + Q ID+ NI+ AT A+ +V+ L P ++D +P D+ Sbjct: 119 LYLRILDEAVEVSLAVSPAQEIDRLNIYAATQTAMIRSVKALHHQPSHLIVDA--VPLDI 176 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +IKGD S+S+AAASI+AK RD LM I + YP YGF ++GY TA H ++ Sbjct: 177 PVPQTTLIKGDQKSISVAAASIVAKEYRDHLMAIYDRLYPGYGFKDNMGYGTAAHLAGLE 236 Query: 190 EKGPSCIHRLTFRPL 204 + G IHR TFRP+ Sbjct: 237 QLGACPIHRRTFRPV 251 >gi|90022228|ref|YP_528055.1| ribonuclease HII [Saccharophagus degradans 2-40] gi|123090288|sp|Q21HI6|RNH2_SACD2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|89951828|gb|ABD81843.1| Ribonuclease H [Saccharophagus degradans 2-40] Length = 199 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 88/183 (48%), Positives = 117/183 (63%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG LAG VV AA+IL ++ G+ DSKKI+ KKR+ L++ I A+ Sbjct: 9 QFVAGVDEVGRGPLAGDVVAAAVILGEDHGIEGLADSKKITEKKRDALFDVIQERAVSFC 68 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ AS + ID+ NI A+L A+ AVE L + P+ +DG +P+ A AV+KGDS+ Sbjct: 69 IARASVEEIDELNILHASLLAMKRAVEGLNIQPQYIYVDGNKLPK-WTYSAEAVVKGDSL 127 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M +KYP YG H GYPT H +K GP+ IHR +F Sbjct: 128 VEEISAASILAKVTRDREMVALDEKYPGYGLAGHKGYPTKVHMDALKRLGPTIIHRKSFA 187 Query: 203 PLR 205 P+R Sbjct: 188 PVR 190 >gi|170699887|ref|ZP_02890917.1| Ribonuclease H [Burkholderia ambifaria IOP40-10] gi|170135209|gb|EDT03507.1| Ribonuclease H [Burkholderia ambifaria IOP40-10] Length = 217 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 90/183 (49%), Positives = 121/183 (66%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LY+ I + A + Sbjct: 27 IVCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKALSAKKRDALYDLIVARASAYCV 86 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS ID NI AT+ A+ AVE L V+P A IDG P L +A A++ GD++ Sbjct: 87 ASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LTVRAEAIVSGDALV 145 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+++P YGF+ HVGY T KH ++E GP +HR +F P Sbjct: 146 PSISAASILAKVTRDRMLVDLHERFPVYGFNVHVGYSTPKHLAALREHGPCEVHRRSFAP 205 Query: 204 LRN 206 +R Sbjct: 206 VRE 208 >gi|304312462|ref|YP_003812060.1| Ribonuclease HII [gamma proteobacterium HdN1] gi|301798195|emb|CBL46417.1| Ribonuclease HII [gamma proteobacterium HdN1] Length = 201 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 82/188 (43%), Positives = 115/188 (61%), Gaps = 2/188 (1%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 +++ +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S KKRE+L E+I + A Sbjct: 10 NRDVGLIAGVDEVGRGPLIGAVVAAAVILDPAKPIEGLTDSKKLSEKKREQLAEQIRAQA 69 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + +I A + ID+ NI +A+L A+ AV L + P L+DG P L A++K Sbjct: 70 LAWAIGRAEAEEIDRINILQASLLAMQRAVLQLAIQPDLVLVDGNRCPR-LSLPCRAIVK 128 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD + I+AASI+AKV RD+ M ++YP YG H GYPTA H I+ G + HR Sbjct: 129 GDLLVPCISAASILAKVARDQEMLEMDRRYPHYGLAQHKGYPTAAHLAAIEIHGIAPEHR 188 Query: 199 LTFRPLRN 206 +F P++ Sbjct: 189 RSFGPIKK 196 >gi|289423531|ref|ZP_06425332.1| ribonuclease HII [Peptostreptococcus anaerobius 653-L] gi|289156033|gb|EFD04697.1| ribonuclease HII [Peptostreptococcus anaerobius 653-L] Length = 266 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 94/196 (47%), Positives = 114/196 (58%), Gaps = 4/196 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E VAGIDEVGRG LAGPVV A +IL GINDSKKI KKREELY Sbjct: 70 QYENDAYLAGYQLVAGIDEVGRGPLAGPVVAAVVILKKGTKIRGINDSKKIPEKKREELY 129 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I A+ I AS ID+HNI AT A+ A++ L+ P L D IP + Sbjct: 130 DLILDQALDYGIGMASPSEIDEHNILNATYIAMRRAIDKLKYRPDCLLNDAVRIP-GVDI 188 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGDS S+SI AASI+AKVTRDR+M K+YP Y F S+ GY T +H I+ K Sbjct: 189 HQVPIIKGDSKSISIGAASIVAKVTRDRMMYDYDKEYPGYNFSSNKGYGTNEHYDGIRAK 248 Query: 192 GPSCIHRLTFRPLRNL 207 G IHR +F L+N Sbjct: 249 GKCPIHRESF--LKNF 262 >gi|269138107|ref|YP_003294807.1| ribonuclease HII [Edwardsiella tarda EIB202] gi|267983767|gb|ACY83596.1| ribonuclease HII [Edwardsiella tarda EIB202] gi|304558151|gb|ADM40815.1| Ribonuclease HII [Edwardsiella tarda FL6-60] Length = 197 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 116/184 (63%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A+ S+ Sbjct: 12 RIAGVDEVGRGPLVGAVVTAAVILDPARPIAGLADSKKLSEKRRCALYDEIVEKALCWSL 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI +AT+ A+ AV L + P LIDG P LP A AV+KGDS Sbjct: 72 GRAEAEEIDRLNILQATMVAMQRAVAGLALPPDFVLIDGNRCPA-LPMAAQAVVKGDSRV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M ++YP+YGF H GYPTA H + + G + HR +F P Sbjct: 131 AEISAASILAKVTRDREMAELDRQYPEYGFAQHKGYPTALHLERLAALGATEHHRRSFGP 190 Query: 204 LRNL 207 ++ + Sbjct: 191 VKRV 194 >gi|84515024|ref|ZP_01002387.1| ribonuclease HII [Loktanella vestfoldensis SKA53] gi|84511183|gb|EAQ07637.1| ribonuclease HII [Loktanella vestfoldensis SKA53] Length = 210 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 88/198 (44%), Positives = 126/198 (63%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + +AG+DEVGRG LAGPVV AA++LDP +P G+NDSKK++ +RE Sbjct: 4 PDFSFEDTAHGRGHLRIAGVDEVGRGPLAGPVVAAAVVLDPARLPAGLNDSKKLTLDRRE 63 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ +I SA +SI+ AS ID HNI +A+ A+ A+ L P LIDG +P L Sbjct: 64 ALFSQIMDSADVSIAQASVAEIDSHNILRASHLAMLRAIAGLATPPDHVLIDGNMVPRGL 123 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + ++KGD+ SLSIAAASI+AKV RDR M +++P YG++++ GYPT H+ + Sbjct: 124 TLSSETIVKGDARSLSIAAASIVAKVWRDRHMVDLAQQFPGYGWEANAGYPTPAHKLALV 183 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + HR +F+P+ N+ Sbjct: 184 TLGVTPHHRRSFKPVHNI 201 >gi|330959212|gb|EGH59472.1| ribonuclease HII [Pseudomonas syringae pv. maculicola str. ES4326] Length = 217 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 86/182 (47%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ KRE+L+ +I A+ I Sbjct: 13 LVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEAKREKLFVEIQEKALCWFI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI AT+ A+ AVE L + P+ ALIDG P+ L + V++GD+ Sbjct: 73 ARAEVEEIDQLNILHATMLAMKRAVEGLVITPKLALIDGNRCPQ-LSVPSAPVVQGDAKV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P Sbjct: 132 PAIAAASILAKVSRDREMAALELVYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 191 Query: 204 LR 205 +R Sbjct: 192 VR 193 >gi|300920135|ref|ZP_07136586.1| ribonuclease HII [Escherichia coli MS 115-1] gi|300412832|gb|EFJ96142.1| ribonuclease HII [Escherichia coli MS 115-1] Length = 198 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ LP + AV+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFVQHKGYPTAFHLEKLAEHGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|322418210|ref|YP_004197433.1| Ribonuclease H [Geobacter sp. M18] gi|320124597|gb|ADW12157.1| Ribonuclease H [Geobacter sp. M18] Length = 228 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 93/208 (44%), Positives = 125/208 (60%), Gaps = 5/208 (2%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 +F ++ P LE + +AG+DE GRG LAGPVV AA+I+ + G+NDS Sbjct: 4 LFPDN-PPLDMLALEGQALRRGYCRIAGVDEAGRGPLAGPVVAAAVIIPTGVLLPGVNDS 62 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 K+++ +KREEL++ I A+ + + H +D NI +ATL A+ AV L V P L Sbjct: 63 KQLTEEKREELFDLIYREAVAVGVGIGDHALVDSINILQATLRAMSDAVRALSVAPDFIL 122 Query: 120 IDGRS-IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 IDG S IP ++P V KGDS+SLSIAAASIIAKVTRDR+M + ++ YGF SH G Sbjct: 123 IDGISSIPMNIP--QRTVKKGDSLSLSIAAASIIAKVTRDRMMVVYDTQFSGYGFASHKG 180 Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 Y A H I E GP IHR +F ++ Sbjct: 181 YGAASHLAAIAELGPCPIHRKSFSGVKE 208 >gi|260437013|ref|ZP_05790829.1| ribonuclease HII [Butyrivibrio crossotus DSM 2876] gi|292810322|gb|EFF69527.1| ribonuclease HII [Butyrivibrio crossotus DSM 2876] Length = 210 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 89/186 (47%), Positives = 113/186 (60%), Gaps = 4/186 (2%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81 + GIDE GRG L GPVV AA+IL INDSKK+S KREE+Y++I A+ Sbjct: 27 YGTICGIDEAGRGPLCGPVVAAAVILPDEYNILYINDSKKLSETKREEVYKEIDKYAVAY 86 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 + S + ID+ NI +AT +A+ A+ L V P L D +IP + + +IKGD+ Sbjct: 87 GVGIVSPERIDEINILQATYEAMRTAIHKLSVTPDILLNDAVTIPM-VDIKQVPIIKGDA 145 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 S SIAAASI+AKVTRD LM K YP+YGF H GY TA H + IKE GP IHR TF Sbjct: 146 KSQSIAAASIVAKVTRDHLMEEYDKLYPEYGFAKHKGYGTAAHIKAIKEYGPCPIHRRTF 205 Query: 202 RPLRNL 207 ++N Sbjct: 206 --IKNF 209 >gi|161504651|ref|YP_001571763.1| ribonuclease HII [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189043654|sp|A9MPH8|RNH2_SALAR RecName: Full=Ribonuclease HII; Short=RNase HII gi|160865998|gb|ABX22621.1| hypothetical protein SARI_02772 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 198 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 86/183 (46%), Positives = 111/183 (60%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LY++I A+ S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALYDEIKEKALSWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L + P LIDG P LP + AV+KGDS Sbjct: 71 GRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPA-LPVPSMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H + + + G + HR +F P Sbjct: 130 AEISAASILAKVTRDAEMAALDIIFPQYGFAQHKGYPTAFHLEKLAQYGATAHHRRSFAP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|148544008|ref|YP_001271378.1| ribonuclease HII [Lactobacillus reuteri DSM 20016] gi|184153402|ref|YP_001841743.1| ribonuclease HII [Lactobacillus reuteri JCM 1112] gi|227364921|ref|ZP_03848966.1| ribonuclease H [Lactobacillus reuteri MM2-3] gi|325682454|ref|ZP_08161971.1| ribonuclease HII [Lactobacillus reuteri MM4-1A] gi|166991068|sp|A5VJL7|RNH2_LACRD RecName: Full=Ribonuclease HII; Short=RNase HII gi|229564285|sp|B2G731|RNH2_LACRJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|148531042|gb|ABQ83041.1| RNase HII [Lactobacillus reuteri DSM 20016] gi|183224746|dbj|BAG25263.1| ribonuclease HII [Lactobacillus reuteri JCM 1112] gi|227070068|gb|EEI08446.1| ribonuclease H [Lactobacillus reuteri MM2-3] gi|324978293|gb|EGC15243.1| ribonuclease HII [Lactobacillus reuteri MM4-1A] Length = 256 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 79/195 (40%), Positives = 115/195 (58%), Gaps = 3/195 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F+ E E +AG+DEVGRG LAGPVV A+IL+ + G+ DSK+++ +RE Sbjct: 59 RFKYEKYYWENGCQYIAGMDEVGRGPLAGPVVTCAVILNADFDLIGVTDSKQLTRHEREN 118 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY +I A+ +SI+ ID+ NI+ AT DA+ AV +L P ++D +P + Sbjct: 119 LYLRIVDEAVEVSIAVNDAPVIDQMNIYAATQDAMIRAVNHLHHRPDHLIVDA--VPLAI 176 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +IKGD S+S+AAASI+AK RD LMR YP YGF ++GY T +H ++ Sbjct: 177 DIPQTTLIKGDQKSISVAAASIVAKEYRDHLMRDYDYVYPGYGFAQNMGYGTKEHLAGLE 236 Query: 190 EKGPSCIHRLTFRPL 204 + G + IHR +F P+ Sbjct: 237 KMGATPIHRRSFNPV 251 >gi|121594909|ref|YP_986805.1| ribonuclease HII [Acidovorax sp. JS42] gi|222110440|ref|YP_002552704.1| ribonuclease hii [Acidovorax ebreus TPSY] gi|189043530|sp|A1W904|RNH2_ACISJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807973|sp|B9MGN1|RNH2_DIAST RecName: Full=Ribonuclease HII; Short=RNase HII gi|120606989|gb|ABM42729.1| RNase HII [Acidovorax sp. JS42] gi|221729884|gb|ACM32704.1| Ribonuclease H [Acidovorax ebreus TPSY] Length = 209 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 85/182 (46%), Positives = 119/182 (65%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82 VAG+DE GRG LAGPVV AA+ILD G+ DSK ++ +RE+LY++I + A+ S Sbjct: 19 GLVAGVDEAGRGPLAGPVVAAAVILDDLQPIAGLADSKVLTAARREKLYDEIRAKALCCS 78 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ AS + ID+HNI +AT+ A+ AV L++ P L+DG +P L A A++KGD++ Sbjct: 79 IAEASVEEIDQHNILQATMLAMRRAVLGLRLKPVRVLVDGNRLPP-LDVPAEAIVKGDAL 137 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SI+AASI+AKVTRDR H++YP YGF H GY TA+H ++ G HR +F Sbjct: 138 VASISAASILAKVTRDRWCAQLHQQYPVYGFAGHKGYGTAEHLAALEVHGACPQHRRSFA 197 Query: 203 PL 204 P+ Sbjct: 198 PV 199 >gi|81428604|ref|YP_395604.1| ribonuclease HII (RNase HII) [Lactobacillus sakei subsp. sakei 23K] gi|97182876|sp|Q38WY6|RNH2_LACSS RecName: Full=Ribonuclease HII; Short=RNase HII gi|78610246|emb|CAI55295.1| Ribonuclease HII (RNase HII) [Lactobacillus sakei subsp. sakei 23K] Length = 253 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 91/197 (46%), Positives = 127/197 (64%), Gaps = 7/197 (3%) Query: 15 EAMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 E EK +WP VAGIDEVGRG LAGPVV AA+IL + + +NDSK++S K ++E Sbjct: 57 ERRQTEKALWPDYPLVAGIDEVGRGPLAGPVVTAAVILPHDFDLWQVNDSKQLSFKLKQE 116 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY +I + A+ +SI AS + ID NI+ AT A+ AV L P L+D ++P D+ Sbjct: 117 LYREIMAQAVSVSIGIASPERIDTENIYHATELAMGEAVAGLDKQPDYLLVDAMTVPTDI 176 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +IKGD+ S+SIA+ASI+AKV RD+LM ++YP Y +++GY TAKH + Sbjct: 177 P--QEKLIKGDARSISIASASIVAKVIRDQLMINYDQQYPGYDLANNMGYGTAKHLAGLA 234 Query: 190 EKGPSCIHRLTFRPLRN 206 E G + IHR +F P++N Sbjct: 235 ELGVTPIHRRSFSPVQN 251 >gi|161524444|ref|YP_001579456.1| ribonuclease HII [Burkholderia multivorans ATCC 17616] gi|189350801|ref|YP_001946429.1| ribonuclease HII [Burkholderia multivorans ATCC 17616] gi|221198308|ref|ZP_03571354.1| ribonuclease HII [Burkholderia multivorans CGD2M] gi|221208247|ref|ZP_03581251.1| ribonuclease HII [Burkholderia multivorans CGD2] gi|221215471|ref|ZP_03588435.1| ribonuclease HII [Burkholderia multivorans CGD1] gi|160341873|gb|ABX14959.1| Ribonuclease H [Burkholderia multivorans ATCC 17616] gi|189334823|dbj|BAG43893.1| ribonuclease H [Burkholderia multivorans ATCC 17616] gi|221164655|gb|EED97137.1| ribonuclease HII [Burkholderia multivorans CGD1] gi|221171895|gb|EEE04338.1| ribonuclease HII [Burkholderia multivorans CGD2] gi|221182240|gb|EEE14641.1| ribonuclease HII [Burkholderia multivorans CGD2M] Length = 210 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 90/183 (49%), Positives = 120/183 (65%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LYE I S+A + Sbjct: 23 IVCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKVLSAKKRDALYELIVSNARAYCV 82 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS ID NI AT+ A+ AVE L V+P A IDG P L +A A++ GD++ Sbjct: 83 ASASVDEIDSLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LSVRAEAIVSGDALV 141 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+++P YGF+ H GY T +H ++E GP HR +F P Sbjct: 142 PSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTPQHLAALREHGPCEAHRRSFAP 201 Query: 204 LRN 206 +R Sbjct: 202 VRE 204 >gi|296158890|ref|ZP_06841718.1| Ribonuclease H [Burkholderia sp. Ch1-1] gi|295890765|gb|EFG70555.1| Ribonuclease H [Burkholderia sp. Ch1-1] Length = 247 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 91/189 (48%), Positives = 122/189 (64%), Gaps = 3/189 (1%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSS 78 E V G+DE GRG LAGPVV AA+I DP+ G++DSK +S KKR+ELY+KI Sbjct: 25 ETPHDIVCGVDEAGRGPLAGPVVAAAVIFDPSKPMIRGLDDSKVLSAKKRDELYDKIVDR 84 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A+ I+SAS + ID NI AT+ A+ AVE L V+P IDG P L ++ AVI Sbjct: 85 ALAYCIASASVEEIDSLNILHATMLAMKRAVEGLSVVPTLVKIDGNRCPT-LSVRSEAVI 143 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD++ SI+AASI+AKVTRDR++ H+ +P YGF++H GY T +H ++E GP H Sbjct: 144 GGDALVKSISAASILAKVTRDRMLLELHQTHPVYGFNAHAGYGTPQHLAALREHGPCEHH 203 Query: 198 RLTFRPLRN 206 R +F P+R Sbjct: 204 RRSFAPVRE 212 >gi|116627722|ref|YP_820341.1| ribonuclease HII [Streptococcus thermophilus LMD-9] gi|122267681|sp|Q03KX7|RNH2_STRTD RecName: Full=Ribonuclease HII; Short=RNase HII gi|116100999|gb|ABJ66145.1| RNase HII [Streptococcus thermophilus LMD-9] Length = 255 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 82/195 (42%), Positives = 120/195 (61%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + + +AG+DEVGRG LAGPVV AA+IL G+NDSKKI K E +Y Sbjct: 60 YEKSLYARGIELIAGVDEVGRGPLAGPVVAAAVILPKLCKIKGLNDSKKIPKSKHEAIYN 119 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 ++ A+ + I + ID NI++AT A+ A+E L P LID ++ DLP + Sbjct: 120 QVMKEAVAVGIGIKDNYVIDDVNIYEATKLAMIEAIEKLNPQPEHLLIDAMNL--DLPIE 177 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ SLSIAAASI+AKVTRD++M +++P Y F + GY T +H I + G Sbjct: 178 QTSIIKGDANSLSIAAASIVAKVTRDKMMADYEQEFPGYAFAKNAGYGTKEHLSGIDKFG 237 Query: 193 PSCIHRLTFRPLRNL 207 + IHR +F P++++ Sbjct: 238 VTPIHRRSFEPIKSI 252 >gi|326316587|ref|YP_004234259.1| ribonuclease H [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373423|gb|ADX45692.1| Ribonuclease H [Acidovorax avenae subsp. avenae ATCC 19860] Length = 240 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 81/183 (44%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82 VAG+DE GRG LAGPVV AA+ILD G+ DSK ++ +RE L+++I + A+ S Sbjct: 21 GLVAGVDEAGRGPLAGPVVAAAVILDELQPIDGLADSKTLTAARREALFDEIRAKALCCS 80 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 ++ A+ + ID NI +AT+ A+ AV L++ P L+DG +P L A A++KGD++ Sbjct: 81 VAEATVEEIDTLNILQATMLAMRRAVAGLRLKPVRVLVDGNRLPP-LDVPAEAIVKGDAL 139 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKVTRDR H+ YP YGF SH GY TA+H ++ G HR +F Sbjct: 140 VQAISAASILAKVTRDRWCAQLHQAYPHYGFASHKGYGTAEHMAALQVHGACPEHRRSFA 199 Query: 203 PLR 205 P+ Sbjct: 200 PVE 202 >gi|298370293|ref|ZP_06981609.1| ribonuclease HII [Neisseria sp. oral taxon 014 str. F0314] gi|298281753|gb|EFI23242.1| ribonuclease HII [Neisseria sp. oral taxon 014 str. F0314] Length = 196 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 83/184 (45%), Positives = 112/184 (60%), Gaps = 1/184 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L I A+ SI Sbjct: 5 LLAGMDEAGRGPLVGSVFAAAVILPERYDLPGLTDSKKLSEKKRDTLAVSIKEQAVSWSI 64 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS + I + NI AT+ A+ AV+ L V+P LIDG +P+DL A AV+KGDS Sbjct: 65 ASASPEEIAELNILHATMLAMARAVQGLAVVPDKVLIDGNRVPKDLGVPAEAVVKGDSKI 124 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M ++YP YGFD H GY TA+H +++ G HR F P Sbjct: 125 IEISAASVLAKTARDAEMYALAERYPQYGFDKHKGYGTAQHLAALQKYGVLPEHRRDFAP 184 Query: 204 LRNL 207 ++ L Sbjct: 185 VKAL 188 >gi|323526474|ref|YP_004228627.1| Ribonuclease H [Burkholderia sp. CCGE1001] gi|323383476|gb|ADX55567.1| Ribonuclease H [Burkholderia sp. CCGE1001] Length = 253 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 89/184 (48%), Positives = 120/184 (65%), Gaps = 3/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-IS 82 V G+DE GRG LAGPVV AA+I DP+ G++DSK ++ KKR+ELYEKI A+ Sbjct: 25 VVCGVDEAGRGPLAGPVVAAAVIFDPSKPMIRGLDDSKALTAKKRDELYEKIVDRALAYC 84 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+SA+ + ID NI AT+ A+ AVE L V P +DG P L ++ AVI GD++ Sbjct: 85 IASATVEEIDSLNILHATMLAMKRAVEGLAVTPTLVKVDGNRCPM-LSIRSEAVIGGDAL 143 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SI+AASI+AKVTRDR++ H+ YP YGF++H GY T +H ++E GP HR +F Sbjct: 144 VKSISAASILAKVTRDRMLLELHQTYPMYGFNAHAGYGTPQHLAALREHGPCEHHRRSFA 203 Query: 203 PLRN 206 P+R Sbjct: 204 PVRE 207 >gi|255655274|ref|ZP_05400683.1| ribonuclease HII [Clostridium difficile QCD-23m63] gi|296451258|ref|ZP_06892998.1| ribonuclease H [Clostridium difficile NAP08] gi|296880390|ref|ZP_06904353.1| ribonuclease H [Clostridium difficile NAP07] gi|296259864|gb|EFH06719.1| ribonuclease H [Clostridium difficile NAP08] gi|296428631|gb|EFH14515.1| ribonuclease H [Clostridium difficile NAP07] Length = 255 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 82/195 (42%), Positives = 117/195 (60%), Gaps = 4/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E K + GIDE GRG LAGPVV + ++ + G+NDSKK+S KR+EL+E Sbjct: 63 FENEGYNKGYLYIGGIDEAGRGPLAGPVVASVVVFKKDTKIEGVNDSKKLSEAKRDELFE 122 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I A+ I +++ ID+ NI AT A+ A+ L+ P L+D +IP + Sbjct: 123 VIKEEALDYGIGIVNNEEIDEFNILNATYMAMKKAINCLKKAPDYLLVDAATIP-GIDIA 181 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++KGDS S+SIAAASI+AKVTRD +M + YP+YGF SH GY T +H + I++ G Sbjct: 182 QNPIVKGDSKSISIAAASILAKVTRDSIMYQYDRVYPEYGFKSHKGYGTKEHYEAIEKYG 241 Query: 193 PSCIHRLTFRPLRNL 207 + IHR +F L+N+ Sbjct: 242 ITPIHRKSF--LKNI 254 >gi|126698859|ref|YP_001087756.1| ribonuclease HII [Clostridium difficile 630] gi|254974807|ref|ZP_05271279.1| ribonuclease HII [Clostridium difficile QCD-66c26] gi|255092195|ref|ZP_05321673.1| ribonuclease HII [Clostridium difficile CIP 107932] gi|255100280|ref|ZP_05329257.1| ribonuclease HII [Clostridium difficile QCD-63q42] gi|255306219|ref|ZP_05350391.1| ribonuclease HII [Clostridium difficile ATCC 43255] gi|255313934|ref|ZP_05355517.1| ribonuclease HII [Clostridium difficile QCD-76w55] gi|255516614|ref|ZP_05384290.1| ribonuclease HII [Clostridium difficile QCD-97b34] gi|255649714|ref|ZP_05396616.1| ribonuclease HII [Clostridium difficile QCD-37x79] gi|260682869|ref|YP_003214154.1| ribonuclease HII [Clostridium difficile CD196] gi|260686467|ref|YP_003217600.1| ribonuclease HII [Clostridium difficile R20291] gi|306519826|ref|ZP_07406173.1| ribonuclease HII [Clostridium difficile QCD-32g58] gi|123363581|sp|Q18BC9|RNH2_CLOD6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|115250296|emb|CAJ68118.1| Ribonuclease HII (RNase HII) [Clostridium difficile] gi|260209032|emb|CBA62137.1| ribonuclease HII [Clostridium difficile CD196] gi|260212483|emb|CBE03398.1| ribonuclease HII [Clostridium difficile R20291] Length = 255 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 82/195 (42%), Positives = 118/195 (60%), Gaps = 4/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +K + GIDE GRG LAGPVV + ++ + G+NDSKK+S KR+EL+E Sbjct: 63 FENEGYDKGYLYIGGIDEAGRGPLAGPVVASVVVFKKDTKIEGVNDSKKLSEAKRDELFE 122 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I A+ I +++ ID+ NI AT A+ A+ L+ P L+D +IP + Sbjct: 123 VIKEEALDYGIGIVNNEEIDEFNILNATYMAMKKAINCLKKAPDYLLVDAATIP-GIDIS 181 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++KGDS S+SIAAASI+AKVTRD +M + YP+YGF SH GY T +H + I++ G Sbjct: 182 QNPIVKGDSKSISIAAASILAKVTRDSIMYQYDRVYPEYGFKSHKGYGTKEHYEAIEKYG 241 Query: 193 PSCIHRLTFRPLRNL 207 + IHR +F L+N+ Sbjct: 242 ITPIHRKSF--LKNI 254 >gi|124262697|ref|YP_001023167.1| RNase HII [Methylibium petroleiphilum PM1] gi|189043523|sp|A2SMZ3|RNH21_METPP RecName: Full=Ribonuclease HII 1; Short=RNase HII 1 gi|124261943|gb|ABM96932.1| RNase HII [Methylibium petroleiphilum PM1] Length = 198 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 85/179 (47%), Positives = 114/179 (63%), Gaps = 2/179 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG LAGPVV AA+ILDP+ G+NDSK++S K+R+ L++ I A I+ Sbjct: 10 AGVDEAGRGPLAGPVVAAAVILDPSRPIDGLNDSKQLSAKRRDRLFDLIIERAAAYCIAE 69 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS + ID+ NI +AT+ A+ A+ L V P+ LIDG P LP ++ A++KGD+ S Sbjct: 70 ASVEEIDRLNILQATMLAMQRAIAGLSVTPQLVLIDGNRSPL-LPMRSEAIVKGDARVTS 128 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I AASI+AKV RDRL H+ +P YGF H GY TA H + + G HR TF P+ Sbjct: 129 IGAASILAKVHRDRLCAKLHETFPLYGFAVHKGYGTADHLAALVQHGACPEHRRTFSPV 187 >gi|157376279|ref|YP_001474879.1| ribonuclease H [Shewanella sediminis HAW-EB3] gi|189043661|sp|A8FY28|RNH2_SHESH RecName: Full=Ribonuclease HII; Short=RNase HII gi|157318653|gb|ABV37751.1| Ribonuclease H [Shewanella sediminis HAW-EB3] Length = 213 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 87/191 (45%), Positives = 115/191 (60%), Gaps = 8/191 (4%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 AG+DEVGRG L G VV AA+ILDP G+NDSKK+S KKRE L+ +I A+ IS Sbjct: 18 GLYAGVDEVGRGPLVGNVVTAAVILDPTKPITGLNDSKKLSEKKREALFTEIHEKALAIS 77 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-------DLPCQAFA 135 I AS + ID+ NI AT+ A+ AV L + P S L+DG P+ D ++ A Sbjct: 78 IGYASPEEIDELNILHATMLAMQRAVAGLDMAPTSVLVDGNRTPDFSHGEDTDRNIESHA 137 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 +IKGD + I+AASI+AKV RDR M + ++P YGF H GYPT H + + G Sbjct: 138 IIKGDGLVAGISAASIVAKVIRDREMDLLDMEHPQYGFAKHKGYPTKAHFEALALHGVLP 197 Query: 196 IHRLTFRPLRN 206 HR +FRP++ Sbjct: 198 EHRKSFRPVKE 208 >gi|315300687|gb|EFU59914.1| ribonuclease HII [Escherichia coli MS 16-3] Length = 198 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 86/184 (46%), Positives = 110/184 (59%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ LP + AV+ GDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVTGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|322516896|ref|ZP_08069794.1| ribonuclease HII [Streptococcus vestibularis ATCC 49124] gi|322124552|gb|EFX96031.1| ribonuclease HII [Streptococcus vestibularis ATCC 49124] Length = 256 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 80/197 (40%), Positives = 119/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E ++ + + +AG+DEVGRG LAGPVV AA+IL G+NDSKKI K E + Sbjct: 58 LSYEKVLYAQGVELIAGVDEVGRGPLAGPVVAAAVILPKFCKIKGLNDSKKIPKSKHEAI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+++ A+ + + + ID NI++AT A+ A+E L P LID ++ DLP Sbjct: 118 YKQVMKEAVAVGVGIKDNHVIDDVNIYEATKLAMAEAIEKLSPKPEHLLIDAMTL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD++M +++P Y F + GY T H + Sbjct: 176 IGQTSIIKGDANSLSIAAASIVAKVTRDKMMADYDQEFPGYAFAKNAGYGTKDHLSGLDN 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 236 FGVTPIHRRSFEPIKSI 252 >gi|238918789|ref|YP_002932303.1| ribonuclease HII [Edwardsiella ictaluri 93-146] gi|259494064|sp|C5B7S2|RNH2_EDWI9 RecName: Full=Ribonuclease HII; Short=RNase HII gi|238868357|gb|ACR68068.1| ribonuclease HII [Edwardsiella ictaluri 93-146] Length = 197 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 87/185 (47%), Positives = 115/185 (62%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A+ S Sbjct: 11 GRIAGVDEVGRGPLVGAVVTAAVILDPARPIAGLADSKKLSEKRRNALYDEIVEKALCWS 70 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI +AT+ A+ AV L P LIDG P LP A AV+KGDS Sbjct: 71 LGRAEAEEIDRLNILQATMVAMQRAVAGLARQPDFVLIDGNRCPA-LPMAAQAVVKGDSR 129 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M ++YP+YGF H GYPTA H + + G + HR +F Sbjct: 130 VAEISAASILAKVTRDREMAALDRQYPEYGFARHKGYPTALHLERLAALGATEHHRRSFG 189 Query: 203 PLRNL 207 P++ + Sbjct: 190 PVKRV 194 >gi|15676119|ref|NP_273250.1| ribonuclease HII [Neisseria meningitidis MC58] gi|11387100|sp|Q9K1G1|RNH2_NEIMB RecName: Full=Ribonuclease HII; Short=RNase HII gi|7225412|gb|AAF40649.1| ribonuclease HII [Neisseria meningitidis MC58] gi|316985719|gb|EFV64665.1| ribonuclease HII family protein [Neisseria meningitidis H44/76] gi|325135118|gb|EGC57745.1| ribonuclease HII [Neisseria meningitidis M13399] gi|325199404|gb|ADY94859.1| ribonuclease HII [Neisseria meningitidis H44/76] Length = 194 Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 81/182 (44%), Positives = 109/182 (59%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I + A+ +++ Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKNQAVEWHVAA 65 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 ASPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +++ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALEKYGVLPEHRRDFAPVR 185 Query: 206 NL 207 NL Sbjct: 186 NL 187 >gi|146276125|ref|YP_001166284.1| ribonuclease HII [Rhodobacter sphaeroides ATCC 17025] gi|166226645|sp|A4WNL5|RNH2_RHOS5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|145554366|gb|ABP68979.1| Ribonuclease H [Rhodobacter sphaeroides ATCC 17025] Length = 212 Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 84/198 (42%), Positives = 124/198 (62%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + E+ + + G+DEVGRG LAGPV AA+ L P IP G+NDSKK+ +RE Sbjct: 6 PDWSHESAAFAEGFTCIVGVDEVGRGPLAGPVTAAAVRLFPGRIPEGLNDSKKLPAARRE 65 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L +I + A +S++ AS + ID+ NI +A+ A+ A+ L P ALIDG IP+ L Sbjct: 66 ALAAEILAVAEVSVAHASVEEIDRLNILQASHLAMARALAGLPCPPDFALIDGHLIPKGL 125 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + A++KGD++ LSIAAASI+AKV RDR+M +++P YG+ ++ GY T H Q + Sbjct: 126 AHRCRAIVKGDALCLSIAAASIVAKVARDRIMVDLEQQHPGYGWRTNAGYGTRDHLQALL 185 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + HR +F+P+ N+ Sbjct: 186 NLGLTPHHRRSFKPVHNI 203 >gi|187924419|ref|YP_001896061.1| ribonuclease HII [Burkholderia phytofirmans PsJN] gi|238689609|sp|B2T5I0|RNH2_BURPP RecName: Full=Ribonuclease HII; Short=RNase HII gi|187715613|gb|ACD16837.1| Ribonuclease H [Burkholderia phytofirmans PsJN] Length = 248 Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 88/184 (47%), Positives = 122/184 (66%), Gaps = 3/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-IS 82 V G+DE GRG LAGPVV AA+I DP+ G++DSK ++ KKR+ELY+KI A+ Sbjct: 30 IVCGVDEAGRGPLAGPVVAAAVIFDPSKPMIRGLDDSKVLTAKKRDELYDKIVDRALAYC 89 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+SA+ + ID NI AT+ A+ AVE L V+P IDG P L ++ AVI GD++ Sbjct: 90 IASATVEEIDSLNILHATMLAMKRAVEGLSVVPTLVKIDGNRCPT-LSVRSEAVIGGDAL 148 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SI+AASI+AKVTRDR++ H+ +P YGF++H GY T +H + ++E GP HR +F Sbjct: 149 VKSISAASILAKVTRDRMLLELHQTHPVYGFNAHAGYGTPQHLKALREHGPCEHHRRSFA 208 Query: 203 PLRN 206 P+R Sbjct: 209 PVRE 212 >gi|156935301|ref|YP_001439217.1| ribonuclease HII [Cronobacter sakazakii ATCC BAA-894] gi|166225185|sp|A7MI15|RNH2_ENTS8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|156533555|gb|ABU78381.1| hypothetical protein ESA_03158 [Cronobacter sakazakii ATCC BAA-894] Length = 198 Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 87/183 (47%), Positives = 110/183 (60%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R L+++I AI S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPLKPIVGLADSKKLSEKRRLALFDEIKEKAIAWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L V P L+DG P LP + AV+KGDS Sbjct: 71 GRAEPHEIDELNILHATMLAMQRAVAGLAVTPEYVLVDGNRCPA-LPMPSMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P Sbjct: 130 AEISAASILAKVTRDAEMAELDLTFPQYGFAQHKGYPTAFHLERLAEHGATAHHRRSFAP 189 Query: 204 LRN 206 +R Sbjct: 190 VRR 192 >gi|62178800|ref|YP_215217.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161612603|ref|YP_001586568.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553356|ref|ZP_02347105.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168235010|ref|ZP_02660068.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168264638|ref|ZP_02686611.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464205|ref|ZP_02698108.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168823100|ref|ZP_02835100.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194734669|ref|YP_002113253.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249555|ref|YP_002145235.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204926664|ref|ZP_03217866.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205351567|ref|YP_002225368.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|224582078|ref|YP_002635876.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|73917832|sp|Q57T25|RNH2_SALCH RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043655|sp|A9N0T3|RNH2_SALPB RecName: Full=Ribonuclease HII; Short=RNase HII gi|238689765|sp|B4TYE3|RNH2_SALSV RecName: Full=Ribonuclease HII; Short=RNase HII gi|238690066|sp|B5F8U4|RNH2_SALA4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|238690468|sp|B5R5I6|RNH2_SALG2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807986|sp|C0Q6K6|RNH2_SALPC RecName: Full=Ribonuclease HII; Short=RNase HII gi|62126433|gb|AAX64136.1| RNAse HII [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161361967|gb|ABX65735.1| hypothetical protein SPAB_00294 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194710171|gb|ACF89392.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195632881|gb|EDX51335.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213258|gb|ACH50655.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197291997|gb|EDY31347.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204323329|gb|EDZ08524.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205271348|emb|CAR36141.1| Ribonuclease HII [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322169|gb|EDZ10008.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205340607|gb|EDZ27371.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205346925|gb|EDZ33556.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224466605|gb|ACN44435.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320084484|emb|CBY94277.1| RNAse HII [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322616054|gb|EFY12971.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620837|gb|EFY17697.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623812|gb|EFY20649.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627260|gb|EFY24051.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630567|gb|EFY27331.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638215|gb|EFY34916.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640700|gb|EFY37351.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645516|gb|EFY42043.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648190|gb|EFY44657.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322657141|gb|EFY53424.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657511|gb|EFY53783.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663831|gb|EFY60031.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666664|gb|EFY62842.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672178|gb|EFY68290.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676511|gb|EFY72582.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679397|gb|EFY75442.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686276|gb|EFY82260.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322713254|gb|EFZ04825.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323193456|gb|EFZ78664.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197522|gb|EFZ82657.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201209|gb|EFZ86278.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209604|gb|EFZ94537.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212144|gb|EFZ96968.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216449|gb|EGA01175.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223361|gb|EGA07696.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225922|gb|EGA10142.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228537|gb|EGA12666.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236850|gb|EGA20926.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239650|gb|EGA23697.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242303|gb|EGA26332.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249965|gb|EGA33861.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252395|gb|EGA36246.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255678|gb|EGA39431.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262885|gb|EGA46435.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265371|gb|EGA48867.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271842|gb|EGA55260.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326626594|gb|EGE32937.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 198 Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 86/183 (46%), Positives = 111/183 (60%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LY++I A+ S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLSLYDEIKEKALSWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L + P LIDG P LP + AV+KGDS Sbjct: 71 GRAEAHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPA-LPVPSMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H + + + G + HR +F P Sbjct: 130 AEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAQYGATAHHRRSFAP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|114769695|ref|ZP_01447305.1| ribonuclease HII [alpha proteobacterium HTCC2255] gi|114549400|gb|EAU52282.1| ribonuclease HII [alpha proteobacterium HTCC2255] Length = 210 Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 91/197 (46%), Positives = 126/197 (63%), Gaps = 1/197 (0%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 ++ +E +R + G+DEVGRG AGPV A+ILDP NIP G+NDSKK++ K+R + Sbjct: 7 NYNIENSLRPNGNEVIMGVDEVGRGPWAGPVTACAVILDPENIPPGLNDSKKLNVKQRTK 66 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 L+E I +S+++S IDK NI +AT A+ ++ L + P LIDG +P +LP Sbjct: 67 LFEDIMNSSLVSCVHVDVGEIDKINILQATFRAMERSISKLPI-PDHILIDGNKLPPNLP 125 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A A+IKGDS S SIAAASIIAKVTRDRLM +YP YG++ + GY T HQ + Sbjct: 126 SPATAIIKGDSKSASIAAASIIAKVTRDRLMADLSVEYPGYGWEKNAGYGTKMHQSGLLN 185 Query: 191 KGPSCIHRLTFRPLRNL 207 G + HR +F+P+ N+ Sbjct: 186 NGVTPHHRRSFKPIHNM 202 >gi|325579117|ref|ZP_08149073.1| ribonuclease HII [Haemophilus parainfluenzae ATCC 33392] gi|325159352|gb|EGC71486.1| ribonuclease HII [Haemophilus parainfluenzae ATCC 33392] Length = 200 Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats. Identities = 83/187 (44%), Positives = 114/187 (60%), Gaps = 1/187 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + VAG+DEVGRG L G VV AA+ILDPN G+ DSKK+S KKR L +I A+ Sbjct: 8 EGYQLVAGVDEVGRGPLVGAVVTAAVILDPNKPIAGLADSKKLSEKKRLALAAEIKEKAL 67 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ A ID+ NI A++ A+ AV+ L++ P L+DG IP +L A AV+KG Sbjct: 68 AWAMGRAEPAEIDELNILHASMLAMERAVKALKIQPHFVLVDGNRIPPNLGFPAQAVVKG 127 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS+ I+AASI+AKV RD+ M K +P+Y F H GYPT H + + E GP +R Sbjct: 128 DSLVAEISAASILAKVARDQEMEELDKNHPEYAFAQHKGYPTKLHLEKLAELGPLPEYRR 187 Query: 200 TFRPLRN 206 +F P++ Sbjct: 188 SFSPVKK 194 >gi|325519162|gb|EGC98633.1| ribonuclease HII [Burkholderia sp. TJI49] Length = 214 Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats. Identities = 89/183 (48%), Positives = 120/183 (65%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LYE I + ++ + Sbjct: 27 IVCGVDEAGRGPLAGPVVAAAVILDPAQPIEGLDDSKALSAKKRDALYELIIARSVSYCV 86 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS ID NI AT+ A+ AVE L V+P A IDG P L +A A++ GD++ Sbjct: 87 ASASVDEIDTLNILHATMLAMKRAVEGLAVLPTLAQIDGNRCPT-LSVRAEAIVSGDALV 145 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+++P YGF+ H GY T KH ++E GP HR +F P Sbjct: 146 PSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTPKHLAALREHGPCEAHRRSFAP 205 Query: 204 LRN 206 +R Sbjct: 206 VRE 208 >gi|146318650|ref|YP_001198362.1| ribonuclease HII [Streptococcus suis 05ZYH33] gi|146320856|ref|YP_001200567.1| ribonuclease HII [Streptococcus suis 98HAH33] gi|253751769|ref|YP_003024910.1| ribonuclease HII [Streptococcus suis SC84] gi|253753593|ref|YP_003026734.1| ribonuclease HII [Streptococcus suis P1/7] gi|253755526|ref|YP_003028666.1| ribonuclease HII [Streptococcus suis BM407] gi|166226663|sp|A4W1C8|RNH2_STRS2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226665|sp|A4VV23|RNH2_STRSY RecName: Full=Ribonuclease HII; Short=RNase HII gi|145689456|gb|ABP89962.1| Ribonuclease HII [Streptococcus suis 05ZYH33] gi|145691662|gb|ABP92167.1| Ribonuclease HII [Streptococcus suis 98HAH33] gi|251816058|emb|CAZ51678.1| ribonuclease HII [Streptococcus suis SC84] gi|251817990|emb|CAZ55772.1| ribonuclease HII [Streptococcus suis BM407] gi|251819839|emb|CAR45820.1| ribonuclease HII [Streptococcus suis P1/7] gi|292558337|gb|ADE31338.1| Ribonuclease H [Streptococcus suis GZ1] gi|319758118|gb|ADV70060.1| ribonuclease HII [Streptococcus suis JS14] Length = 257 Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats. Identities = 81/195 (41%), Positives = 117/195 (60%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + E + +AGIDEVGRG LAGPVV AA+IL +NDSKKI K E +Y+ Sbjct: 60 YEKSLYENGVEFIAGIDEVGRGPLAGPVVAAAVILPKGCKIRYLNDSKKIPKSKHEAIYQ 119 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 ++ A+ + + ID+ NI++AT A+ A+ L P LID + D P Sbjct: 120 EVMERAVAVGVGIKDAALIDEVNIYEATKLAMLEALGKLSQKPDHLLIDAMKL--DTPIP 177 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ SLSIAAASI+AKVTRD++M K++ YGF + GY T +H + + + G Sbjct: 178 QTSIIKGDANSLSIAAASIVAKVTRDKMMADYDKEFSGYGFAKNAGYGTTEHLEGLNKLG 237 Query: 193 PSCIHRLTFRPLRNL 207 + IHR TF P++++ Sbjct: 238 ITPIHRKTFEPIKSM 252 >gi|315652839|ref|ZP_07905813.1| ribonuclease HII [Eubacterium saburreum DSM 3986] gi|315485041|gb|EFU75449.1| ribonuclease HII [Eubacterium saburreum DSM 3986] Length = 214 Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats. Identities = 87/190 (45%), Positives = 121/190 (63%), Gaps = 4/190 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + +AGIDE GRG LAGPVV AA+IL + +NDSKK++ K+R+ L+ Sbjct: 21 EFENKY--SDFEFIAGIDEAGRGPLAGPVVAAAVILPKDIFLPFLNDSKKVTEKRRDVLF 78 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I A+ I AS+ ID+ NI +AT +A+ A++ L+ P L+D IP D+ Sbjct: 79 DRIKQEALAYGIGIASNVLIDEINILQATYEAMREAIKKLKKTPDILLVDAVHIP-DITI 137 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++KGD+ S++IAAASI+AKVTRDRLM K YP+YGF + GY TAKH + +KE Sbjct: 138 RQLGIVKGDARSINIAAASILAKVTRDRLMLEYDKIYPEYGFAYNKGYGTAKHIEALKEY 197 Query: 192 GPSCIHRLTF 201 G IHR TF Sbjct: 198 GACDIHRRTF 207 >gi|293394717|ref|ZP_06639009.1| ribonuclease HII [Serratia odorifera DSM 4582] gi|291422843|gb|EFE96080.1| ribonuclease HII [Serratia odorifera DSM 4582] Length = 202 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 86/184 (46%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A S Sbjct: 11 QCIAGVDEVGRGPLVGAVVTAAVILDPARPIVGLADSKKLSEKRRLALYDEIIDKAQAWS 70 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID NI AT+ A+ AV L + P LIDG P+ LP ++ AV+KGDS Sbjct: 71 LGRAEPAEIDSLNILHATMLAMQRAVAGLAITPDLVLIDGNRCPK-LPMRSQAVVKGDSR 129 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M +P YGF H GYPTA H + + + G + HR +F Sbjct: 130 VAEISAASILAKVTRDREMAELDLSFPAYGFAQHKGYPTAFHLEKLAQYGATQHHRRSFA 189 Query: 203 PLRN 206 P+R Sbjct: 190 PVRR 193 >gi|304388999|ref|ZP_07371046.1| ribonuclease HII [Neisseria meningitidis ATCC 13091] gi|304337133|gb|EFM03320.1| ribonuclease HII [Neisseria meningitidis ATCC 13091] Length = 194 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 82/182 (45%), Positives = 108/182 (59%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I + A +S+ Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDTLAEMIKNQAAAWHVSA 65 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A+ + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 ATPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NL 207 NL Sbjct: 186 NL 187 >gi|227543435|ref|ZP_03973484.1| ribonuclease H [Lactobacillus reuteri CF48-3A] gi|300910102|ref|ZP_07127562.1| ribonuclease H [Lactobacillus reuteri SD2112] gi|227186587|gb|EEI66658.1| ribonuclease H [Lactobacillus reuteri CF48-3A] gi|300892750|gb|EFK86110.1| ribonuclease H [Lactobacillus reuteri SD2112] Length = 256 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 80/195 (41%), Positives = 115/195 (58%), Gaps = 3/195 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F+ E EK VAG+DEVGRG LAGPVV +IL+ + G+ DSK+++ +RE Sbjct: 59 RFKYEKYYWEKGYQYVAGMDEVGRGPLAGPVVTCVVILNADFDLIGVTDSKQLTRHEREN 118 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY +I A+ +SI+ ID+ NI+ AT DA+ AV +L P ++D +P + Sbjct: 119 LYLRIVDEAVEVSIAVNDAPVIDQMNIYAATQDAMIRAVNHLHHRPDHLIVDA--VPLAI 176 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +IKGD S+S+AAASI+AK RD LMR YP YGF ++GY T +H ++ Sbjct: 177 DIPQTTLIKGDQKSISVAAASIVAKEYRDHLMRDYDYVYPGYGFAQNMGYGTKEHLAGLE 236 Query: 190 EKGPSCIHRLTFRPL 204 + G + IHR +F P+ Sbjct: 237 KMGATPIHRRSFNPV 251 >gi|227515157|ref|ZP_03945206.1| ribonuclease H [Lactobacillus fermentum ATCC 14931] gi|227086489|gb|EEI21801.1| ribonuclease H [Lactobacillus fermentum ATCC 14931] Length = 256 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 84/195 (43%), Positives = 119/195 (61%), Gaps = 3/195 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E + + VAGIDEVGRG LAGPVV A++LD G+ DSK++S +RE+ Sbjct: 59 RFRYENQLWQAGHQYVAGIDEVGRGPLAGPVVTCAVVLDSQFDLVGVTDSKQLSRHEREQ 118 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY +I A+ +S++ + Q ID+ NI+ AT A+ +V+ L P ++D +P D+ Sbjct: 119 LYLRILDEAVEVSLAVSPAQEIDRLNIYAATQAAMIRSVKALHHQPSHLIVDA--VPLDI 176 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +IKGD S+S+AAASI+AK RD LM I + YP YGF ++GY TA H ++ Sbjct: 177 PVPQTTLIKGDQKSISVAAASIVAKEYRDHLMAIYDRLYPGYGFKDNMGYGTAAHLAGLE 236 Query: 190 EKGPSCIHRLTFRPL 204 + G IHR TFRP+ Sbjct: 237 QLGACPIHRRTFRPV 251 >gi|91788543|ref|YP_549495.1| ribonuclease HII [Polaromonas sp. JS666] gi|123164802|sp|Q12A45|RNH2_POLSJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|91697768|gb|ABE44597.1| RNase HII [Polaromonas sp. JS666] Length = 199 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 85/182 (46%), Positives = 120/182 (65%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82 +AG+DE GRG L GPVV AA+ILD N G+ DSKK++ ++RE LY++I + A+ S Sbjct: 14 GLLAGVDEAGRGPLMGPVVAAAVILDELNPIKGLADSKKLTPQRREALYDEIRAKALCCS 73 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A+ + ID+ NI +AT+ A+ AVE+L++ P L+DG +P L + AVI GD+I Sbjct: 74 IALATAEEIDRLNILQATMLAMRRAVESLRLKPNKVLVDGNRLPT-LAIVSEAVIGGDAI 132 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKV RDR H +YP YGF SH GY TA+H ++E G HR +F Sbjct: 133 VPAISAASILAKVYRDRWCAEFHLEYPQYGFASHKGYSTAEHLAALREHGACPQHRRSFA 192 Query: 203 PL 204 P+ Sbjct: 193 PV 194 >gi|29348821|ref|NP_812324.1| ribonuclease HII [Bacteroides thetaiotaomicron VPI-5482] gi|253568833|ref|ZP_04846243.1| ribonuclease HII [Bacteroides sp. 1_1_6] gi|298387905|ref|ZP_06997454.1| ribonuclease HII [Bacteroides sp. 1_1_14] gi|39932389|sp|Q8A293|RNH2_BACTN RecName: Full=Ribonuclease HII; Short=RNase HII gi|29340727|gb|AAO78518.1| ribonuclease HII [Bacteroides thetaiotaomicron VPI-5482] gi|251840852|gb|EES68933.1| ribonuclease HII [Bacteroides sp. 1_1_6] gi|298259312|gb|EFI02187.1| ribonuclease HII [Bacteroides sp. 1_1_14] Length = 200 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 105/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI +A+ A++ AV+ L V P+ LIDG + VIKGD LS Sbjct: 73 VSPEEIDEINILRASFLAMHRAVDQLSVRPQHLLIDGNRFNKYPDIPHTTVIKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H++YP Y ++ + GYPT KH+ I E G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPFYDWNKNKGYPTKKHRAAIAEHGTTPYHRMTFNLL 191 >gi|331002666|ref|ZP_08326181.1| ribonuclease HII [Lachnospiraceae oral taxon 107 str. F0167] gi|330407079|gb|EGG86583.1| ribonuclease HII [Lachnospiraceae oral taxon 107 str. F0167] Length = 214 Score = 254 bits (649), Expect = 8e-66, Method: Composition-based stats. Identities = 86/190 (45%), Positives = 120/190 (63%), Gaps = 4/190 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E ++ +AG+DE GRG LAGPVV AA+IL + +NDSKK++ K+R+ L+ Sbjct: 21 EFENKY--SDLAYIAGLDEAGRGPLAGPVVAAAVILPKDIFLPFLNDSKKVTEKRRDVLF 78 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I +AI I AS+ ID+ NI +AT +A+ A+ L P L+D IP + Sbjct: 79 DEIKQNAIAYGIGIASNTLIDEINILQATYEAMREAINALSTRPDILLVDAIHIP-GIDI 137 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++KGD+ S++IAAASI+AKVTRDRLM K YP+YGF S+ GY TA H +KE Sbjct: 138 RQVGIVKGDAKSVNIAAASILAKVTRDRLMAEYDKIYPEYGFASNKGYGTAAHIAALKEY 197 Query: 192 GPSCIHRLTF 201 GP IHR +F Sbjct: 198 GPCEIHRKSF 207 >gi|119471147|ref|ZP_01613679.1| RNAse HII [Alteromonadales bacterium TW-7] gi|119445803|gb|EAW27085.1| RNAse HII [Alteromonadales bacterium TW-7] Length = 201 Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats. Identities = 82/192 (42%), Positives = 113/192 (58%), Gaps = 2/192 (1%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 + N+ +AG+DEVGRG L G VV AA+ILDP G+ DSKK++ KKR+ L +I Sbjct: 2 QIERPNVTLIAGVDEVGRGPLVGDVVTAAVILDPTKPIAGLADSKKLTDKKRQALATEIK 61 Query: 77 SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 +A+ + S ID NI AT+ A+ AVE L P IDG +P+ L A A Sbjct: 62 ENALCYAYGRCSPSEIDDLNILHATMLAMSRAVEGLSTQPEFVFIDGNRLPK-LAMPAQA 120 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V+KGDS+ I+AASI+AKV RD M K++P YGF H GYPT H +++ G Sbjct: 121 VVKGDSLVAEISAASILAKVARDDEMLELDKRHPQYGFAGHKGYPTKAHFAALEQYGAID 180 Query: 196 IHRLTFRPLRNL 207 HR +F+P++ + Sbjct: 181 EHRKSFKPVQRV 192 >gi|325129110|gb|EGC51959.1| ribonuclease HII [Neisseria meningitidis N1568] Length = 194 Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats. Identities = 81/182 (44%), Positives = 109/182 (59%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I + A+ +++ Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKNQAVAWHVAA 65 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A+ + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 ATPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NL 207 NL Sbjct: 186 NL 187 >gi|225025287|ref|ZP_03714479.1| hypothetical protein EIKCOROL_02184 [Eikenella corrodens ATCC 23834] gi|224941905|gb|EEG23114.1| hypothetical protein EIKCOROL_02184 [Eikenella corrodens ATCC 23834] Length = 194 Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats. Identities = 78/182 (42%), Positives = 111/182 (60%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA++L G+ DSKK+S ++R+EL I A+ +++ Sbjct: 5 AGVDEAGRGPLVGSVFAAAVVLPNEYDLPGLTDSKKLSERRRDELAVLIKQQALAWCVAA 64 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS + ID+ NI AT+ A+ AV L+ +P IDG +P DL C+A AVIKGDS + Sbjct: 65 ASVEEIDRLNILHATMLAMRRAVHGLERLPEKVWIDGNRVPPDLGCEAEAVIKGDSKIIQ 124 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M ++YP YGF+ H GY TA+H ++ G HR +F P+R Sbjct: 125 ISAASVLAKTARDAEMYALAERYPQYGFERHKGYGTAEHLAALQRHGALPEHRRSFAPVR 184 Query: 206 NL 207 + Sbjct: 185 EI 186 >gi|254252072|ref|ZP_04945390.1| Ribonuclease H [Burkholderia dolosa AUO158] gi|124894681|gb|EAY68561.1| Ribonuclease H [Burkholderia dolosa AUO158] Length = 215 Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 87/182 (47%), Positives = 119/182 (65%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 V G+DE GRG LAGPVV AA+IL+P G++DSK +S KKR+ LYE I ++ + Sbjct: 28 IVCGVDEAGRGPLAGPVVAAAVILNPERPIDGLDDSKVLSAKKRDALYELIVERSLAYCV 87 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS ID NI AT+ A+ AVE L ++P A IDG P L +A A++ GD++ Sbjct: 88 ASASVDEIDTLNILHATMLAMKRAVEGLSILPTLAQIDGNRCPT-LSVRAEAIVSGDALV 146 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+++P YGF+ H GY T KH ++E GP HR +F P Sbjct: 147 PSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTEKHLAALREHGPCEAHRRSFAP 206 Query: 204 LR 205 +R Sbjct: 207 VR 208 >gi|210615856|ref|ZP_03290818.1| hypothetical protein CLONEX_03037 [Clostridium nexile DSM 1787] gi|210150059|gb|EEA81068.1| hypothetical protein CLONEX_03037 [Clostridium nexile DSM 1787] Length = 252 Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 86/186 (46%), Positives = 115/186 (61%), Gaps = 4/186 (2%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII- 81 + GIDEVGRG LAGPVV A+IL + +NDSKK+S K+REELY++I AI Sbjct: 69 FSYICGIDEVGRGPLAGPVVAGAVILPKDCEILYLNDSKKLSEKRREELYDEIMEKAIAT 128 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I S ID+ NI +AT +A+ A++ L+ P L D +IP + +IKGD+ Sbjct: 129 GIGIVSPARIDEINILQATYEAMRIAIQQLETEPDLLLNDAVTIP-GVTIDQVPIIKGDA 187 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 S+SIAAASIIAKVTRDRLM P YGF S+ GY +A+H +K G + IHR++F Sbjct: 188 KSVSIAAASIIAKVTRDRLMVQYDDVLPGYGFASNKGYGSAEHITALKTLGATPIHRMSF 247 Query: 202 RPLRNL 207 ++N Sbjct: 248 --IKNF 251 >gi|308388411|gb|ADO30731.1| ribonuclease HII [Neisseria meningitidis alpha710] gi|325131049|gb|EGC53774.1| ribonuclease HII [Neisseria meningitidis OX99.30304] gi|325137025|gb|EGC59621.1| ribonuclease HII [Neisseria meningitidis M0579] gi|325145388|gb|EGC67665.1| ribonuclease HII [Neisseria meningitidis M01-240013] gi|325202973|gb|ADY98427.1| ribonuclease HII [Neisseria meningitidis M01-240149] gi|325205284|gb|ADZ00737.1| ribonuclease HII [Neisseria meningitidis M04-240196] gi|325207229|gb|ADZ02681.1| ribonuclease HII [Neisseria meningitidis NZ-05/33] Length = 194 Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 82/182 (45%), Positives = 109/182 (59%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I + A+ +++ Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPEIFDLPGLTDSKKLSEKKRDALAEMIKNQAVAWHVAA 65 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 ASPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NL 207 NL Sbjct: 186 NL 187 >gi|254293355|ref|YP_003059378.1| ribonuclease H [Hirschia baltica ATCC 49814] gi|254041886|gb|ACT58681.1| Ribonuclease H [Hirschia baltica ATCC 49814] Length = 194 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 84/182 (46%), Positives = 108/182 (59%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + G+DE GRG AGPV A+IL+P N G+NDSKK+S KKR++L I A+ SI Sbjct: 6 LICGVDEAGRGPWAGPVCAGAVILNPLNPIAGLNDSKKLSEKKRDKLALLIKEYALCWSI 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 AS + ID+ NI +A A+ AV+ L + P ALIDG P L C+ +I GD I Sbjct: 66 GWASPEEIDELNIRQANHLAMQRAVQGLSIAPDLALIDGNDAPP-LDCRTETLIGGDGIE 124 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AK RD M +YPDYGF H GY H +K GP IHR+TF+P Sbjct: 125 ACISAASILAKTARDAKMVEYDLQYPDYGFAKHKGYGVKAHSDALKRIGPCPIHRMTFKP 184 Query: 204 LR 205 +R Sbjct: 185 VR 186 >gi|294635136|ref|ZP_06713646.1| ribonuclease HII [Edwardsiella tarda ATCC 23685] gi|291091472|gb|EFE24033.1| ribonuclease HII [Edwardsiella tarda ATCC 23685] Length = 197 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 88/184 (47%), Positives = 115/184 (62%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A+ S+ Sbjct: 12 RIAGVDEVGRGPLVGAVVTAAVILDPARPIRGLADSKKLSEKRRNALYDEIVEKALCWSL 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI +AT+ A+ AV L + P LIDG P LP A AV+KGDS Sbjct: 72 GRAEPEEIDRLNILQATMVAMQRAVAGLTLPPDLVLIDGNRCPA-LPMAAQAVVKGDSRV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M ++YP YGF H GYPTA H + E G + HR +F P Sbjct: 131 AEISAASILAKVTRDREMAALDRQYPAYGFAQHKGYPTALHLARLAELGATDQHRRSFAP 190 Query: 204 LRNL 207 ++ + Sbjct: 191 VKRV 194 >gi|220934349|ref|YP_002513248.1| Ribonuclease H [Thioalkalivibrio sp. HL-EbGR7] gi|254808004|sp|B8GQ66|RNH2_THISH RecName: Full=Ribonuclease HII; Short=RNase HII gi|219995659|gb|ACL72261.1| Ribonuclease H [Thioalkalivibrio sp. HL-EbGR7] Length = 202 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 124/195 (63%), Gaps = 5/195 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 +LEA + + VAG+DEVGRG LAGPVV AA+ILDP G+ DSKK+S +RE L Sbjct: 2 DLEAWL---GLPGVAGVDEVGRGPLAGPVVAAAVILDPARPIDGLKDSKKLSPARREALD 58 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I ++ ++ + ID+ NI +A+L A+ AVE L P AL+DG P+ L Sbjct: 59 VQIRERSLAFALGLCTPAEIDRINILQASLLAMQRAVEALSHRPEMALVDGNRCPK-LTM 117 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A AVIKGDS +I+AASIIAKV RDRLM +++P YG SH+GYPT H + ++ Sbjct: 118 TAHAVIKGDSRVPAISAASIIAKVHRDRLMLALDEQHPGYGLGSHMGYPTPVHLEALERL 177 Query: 192 GPSCIHRLTFRPLRN 206 GPS HRL+F P+R Sbjct: 178 GPSPCHRLSFAPVRR 192 >gi|307824003|ref|ZP_07654230.1| Ribonuclease H [Methylobacter tundripaludum SV96] gi|307734787|gb|EFO05637.1| Ribonuclease H [Methylobacter tundripaludum SV96] Length = 203 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 86/186 (46%), Positives = 116/186 (62%), Gaps = 2/186 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DE GRG LAGPV AA+ILDP G+ DSK +S KR LY I +A+ SI Sbjct: 14 IVAGVDEAGRGPLAGPVFAAAVILDPMRPIAGLADSKILSESKRNSLYIIIKEAALSWSI 73 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A ID NI +ATL A+ AVE L + P L+DG +P+ L A A++KGDS Sbjct: 74 AQAGVDEIDGLNILQATLLAMQRAVEGLNIQPDEVLVDGNRLPK-LSMPAQAIVKGDSKV 132 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKV RD+LM H++YPD+ F H GY T +H I++ G +HR TF P Sbjct: 133 QAISAASILAKVERDKLMVDYHQQYPDFAFHVHKGYGTKQHLAEIEQFGFLAVHRRTFNP 192 Query: 204 LRNLSV 209 ++ + + Sbjct: 193 VKTMLI 198 >gi|170692156|ref|ZP_02883319.1| Ribonuclease H [Burkholderia graminis C4D1M] gi|170142586|gb|EDT10751.1| Ribonuclease H [Burkholderia graminis C4D1M] Length = 273 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 88/184 (47%), Positives = 120/184 (65%), Gaps = 3/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-IS 82 V G+DE GRG LAGPVV AA+I DP+ G++DSK ++ KKR+ELYEKI A+ Sbjct: 47 IVCGVDEAGRGPLAGPVVAAAVIFDPSKPMIRGLDDSKVLTAKKRDELYEKIVDRALAYC 106 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+SA+ + ID NI AT+ A+ AVE L V P +DG P L ++ AVI GD++ Sbjct: 107 IASATVEEIDTLNILHATMLAMKRAVEGLSVTPTLVKVDGNRCPM-LSVRSEAVIGGDAL 165 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SI+AASI+AKVTRDR++ H+ +P YGF++H GY T +H ++E GP HR +F Sbjct: 166 VKSISAASILAKVTRDRMLLELHQTHPVYGFNAHAGYGTPQHLAALREHGPCEHHRRSFA 225 Query: 203 PLRN 206 P+R Sbjct: 226 PVRE 229 >gi|152980735|ref|YP_001353734.1| ribonuclease HII [Janthinobacterium sp. Marseille] gi|166225192|sp|A6SZN7|RNH2_JANMA RecName: Full=Ribonuclease HII; Short=RNase HII gi|151280812|gb|ABR89222.1| ribonuclease HII [Janthinobacterium sp. Marseille] Length = 210 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 87/202 (43%), Positives = 122/202 (60%), Gaps = 5/202 (2%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P+ L + + E + G+DE GRG LAGPV AA+ILDP G+ DSKK++ Sbjct: 3 KEDPNLSLFSFLDED---IICGVDEAGRGPLAGPVFAAAVILDPMRPIDGLRDSKKLTEV 59 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KR+ L +I A+ SI+ S + ID NI +AT+ A+ A+E L V+P ALIDG Sbjct: 60 KRDALAIEIKQYALSWSIAQCSEEEIDSLNILQATMLAMRRAIEGLHVVPTLALIDGNRC 119 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P ++ A+IKGD +I+AASI+AK RD + + H +YP Y FD H GYPTA H Sbjct: 120 PVT-SVRSEAIIKGDDKVQAISAASILAKTARDHALGLLHIQYPHYAFDQHKGYPTALHL 178 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 + ++E G S +HR ++ P+R L Sbjct: 179 ERLREHGVSPVHRKSYAPVRAL 200 >gi|296313291|ref|ZP_06863232.1| ribonuclease HII [Neisseria polysaccharea ATCC 43768] gi|296840213|gb|EFH24151.1| ribonuclease HII [Neisseria polysaccharea ATCC 43768] Length = 194 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 83/182 (45%), Positives = 108/182 (59%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I S A+ I++ Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKSQAVAWHIAA 65 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 AGPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NL 207 NL Sbjct: 186 NL 187 >gi|171779427|ref|ZP_02920391.1| hypothetical protein STRINF_01272 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282044|gb|EDT47475.1| hypothetical protein STRINF_01272 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 262 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 86/200 (43%), Positives = 121/200 (60%), Gaps = 6/200 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + + GIDEVGRG LAGPVV A +IL N +NDSKKI K EE+ Sbjct: 61 LRYEKELYQAGYEAIGGIDEVGRGPLAGPVVTACVILPKNCKIKHLNDSKKIPKKHHEEI 120 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127 YE++ + A+ + I + ID NI++AT + A++ ++ P LID + Sbjct: 121 YEEVLARALGVGIGVIDNNVIDDINIYEATKVGMLQAIDQIKGQVTKPDYLLIDAMHLDT 180 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D+P Q+ +IKGD+ SLSIAAASI+AKVTRDR+M K+YP Y F+ +VGY T H Sbjct: 181 DIPQQS--LIKGDANSLSIAAASIVAKVTRDRMMADYAKEYPGYAFEKNVGYGTKDHLVG 238 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 +KE G + IHR TF P++++ Sbjct: 239 LKEHGITPIHRKTFEPIKSM 258 >gi|153814000|ref|ZP_01966668.1| hypothetical protein RUMTOR_00207 [Ruminococcus torques ATCC 27756] gi|317502410|ref|ZP_07960575.1| ribonuclease [Lachnospiraceae bacterium 8_1_57FAA] gi|331088003|ref|ZP_08336926.1| hypothetical protein HMPREF1025_00509 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848396|gb|EDK25314.1| hypothetical protein RUMTOR_00207 [Ruminococcus torques ATCC 27756] gi|316896220|gb|EFV18326.1| ribonuclease [Lachnospiraceae bacterium 8_1_57FAA] gi|330409314|gb|EGG88763.1| hypothetical protein HMPREF1025_00509 [Lachnospiraceae bacterium 3_1_46FAA] Length = 255 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 87/196 (44%), Positives = 121/196 (61%), Gaps = 6/196 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E ++ M + GIDE GRG LAGPVV A+IL + +NDSKK+S +RE LY Sbjct: 61 SYERKYKDAEM--ICGIDEAGRGPLAGPVVAGAVILPKDCEILYLNDSKKLSASRREALY 118 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I A+ + + AS ID+ NI +AT +A+ AVE L V+P L D +IPE +P Sbjct: 119 DEIMEKAVAVGVGMASPARIDEINILQATYEAMRKAVEQLSVVPDLLLNDAVTIPE-MPY 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++KGD+ S+SIAAAS+IAKVTRDRLM K P+YGF + GY + H + +K Sbjct: 178 RQVPIVKGDAKSVSIAAASVIAKVTRDRLMMQYDKILPEYGFAQNKGYGSQSHIEALKRV 237 Query: 192 GPSCIHRLTFRPLRNL 207 G S IHR +F ++N Sbjct: 238 GASPIHRRSF--IKNF 251 >gi|118579525|ref|YP_900775.1| ribonuclease HII [Pelobacter propionicus DSM 2379] gi|189043636|sp|A1AMZ7|RNH2_PELPD RecName: Full=Ribonuclease HII; Short=RNase HII gi|118502235|gb|ABK98717.1| RNase HII [Pelobacter propionicus DSM 2379] Length = 219 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 90/194 (46%), Positives = 121/194 (62%), Gaps = 2/194 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E ++ +AGIDE GRGAL GPVV AA+IL G++DSKK+S + RE+L++ Sbjct: 20 FEQQALKQGHRVIAGIDEAGRGALCGPVVAAAVILPTGMAIPGVDDSKKLSPRTREQLFD 79 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + A+ + I + Q ID+ NI +AT A+ AV+ L P LIDG S D+P Sbjct: 80 EIMARALSVGIGIGTPQLIDRINILQATRHAMAEAVDILAPRPDMLLIDGISTI-DVPLP 138 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 + KGDS SL+IAAASIIAKV+RDR++ +P YGF SH GY A H + I+ G Sbjct: 139 QKTITKGDSRSLTIAAASIIAKVSRDRMLTELDLLHPGYGFASHKGYGCASHMEAIRRLG 198 Query: 193 PSCIHRLTFRPLRN 206 PS +HRLTFR +R Sbjct: 199 PSPVHRLTFRGVRE 212 >gi|224541328|ref|ZP_03681867.1| hypothetical protein CATMIT_00488 [Catenibacterium mitsuokai DSM 15897] gi|224525765|gb|EEF94870.1| hypothetical protein CATMIT_00488 [Catenibacterium mitsuokai DSM 15897] Length = 211 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 75/203 (36%), Positives = 121/203 (59%), Gaps = 6/203 (2%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++ + E R + G+DE GRG +AGP+VV +I + INDSKK++ Sbjct: 1 MNKQERLKYENEARAAGYSRILGVDEAGRGPMAGPLVVGGVIFPEDFYDERINDSKKLTE 60 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKRE LY+ I +A+ I S + +D N+++A+ + VE+L+ P L D Sbjct: 61 KKREALYDLIIENALAYQIEVLSVEEVDTLNVYEASRTGMKRIVESLE--PDFTLSDAMP 118 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + + ++IKGD+ S+SI AASI+AKVTRDR+M+ K+YP+YGF+ H GY T H Sbjct: 119 LGD---IPHLSIIKGDAKSISIGAASILAKVTRDRIMKEYGKQYPEYGFEKHKGYVTKAH 175 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 ++ +++ G + IHR +F P++ + Sbjct: 176 KEALEKYGVTPIHRRSFAPVQKV 198 >gi|120555445|ref|YP_959796.1| ribonuclease H [Marinobacter aquaeolei VT8] gi|189043693|sp|A1U3P0|RNH2_MARAV RecName: Full=Ribonuclease HII; Short=RNase HII gi|120325294|gb|ABM19609.1| RNase HII [Marinobacter aquaeolei VT8] Length = 227 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 80/182 (43%), Positives = 110/182 (60%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP G+ DSKK++ KKR LY+ I +A S+ Sbjct: 17 LLAGVDEVGRGPLIGAVVTAAVILDPARPIPGLADSKKLTEKKRLRLYDDILENAAAWSL 76 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 ID+ NI++AT+ A+ AVE L + P L+DG P+ + VIKGDS Sbjct: 77 GRCEASEIDELNIYQATMLAMKRAVEGLSIAPEYVLVDGNRCPK-WQWPSEPVIKGDSRV 135 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKVTRDR M ++P +G H GYPT H + + G + HR +FRP Sbjct: 136 EAISAASILAKVTRDREMEALDVRFPGFGLAQHKGYPTPVHLEALNRLGVTPEHRRSFRP 195 Query: 204 LR 205 ++ Sbjct: 196 VK 197 >gi|259417130|ref|ZP_05741049.1| ribonuclease HII [Silicibacter sp. TrichCH4B] gi|259346036|gb|EEW57850.1| ribonuclease HII [Silicibacter sp. TrichCH4B] Length = 208 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 86/200 (43%), Positives = 128/200 (64%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 + P LE + + +AG+DEVGRG LAGPV AA++LD +P G+NDSKK++ ++ Sbjct: 5 DTPDLSLEQVALSRGYTRIAGVDEVGRGPLAGPVTAAAVVLDLAALPEGLNDSKKLTPRR 64 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 R L +I + A +++ AS + ID HNI +A+ A+ AV L P LIDG IP Sbjct: 65 RAALEPEIMARASYAVAHASVEEIDHHNILRASHLAMERAVAALDPQPDYLLIDGNLIPR 124 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 DL A AV+KGD SLSIAAASI+AK RDR+M +++P YG++ + GYP+ +H++ Sbjct: 125 DLRIPAEAVVKGDGRSLSIAAASILAKEARDRIMVDLAQQFPGYGWERNAGYPSKQHREA 184 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 + + G + HR +F+P+ N+ Sbjct: 185 LIKIGVTPHHRRSFKPVHNI 204 >gi|291524515|emb|CBK90102.1| Ribonuclease HII [Eubacterium rectale DSM 17629] Length = 253 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 87/189 (46%), Positives = 118/189 (62%), Gaps = 4/189 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + GIDEVGRG LAGPVV A+IL + INDSKK++ KR+ELY+ Sbjct: 63 YEREYAS--YAHICGIDEVGRGPLAGPVVACAVILPKDCDILYINDSKKLTAAKRDELYD 120 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I A+ + I ASH+ ID+ NI +AT +A+ A+ L +P L D +IP + + Sbjct: 121 VIMEKAVSVGIGMASHERIDEINILQATYEAMRQAIGKLDPVPDLTLNDAVTIP-GVDIK 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +IKGD+ S+SI AASI+AKVTRDR+M + YP YGF S+ GY +A+H + +KE G Sbjct: 180 QVPIIKGDAKSISIGAASIVAKVTRDRMMVEYDRIYPGYGFASNKGYGSAEHIKALKEIG 239 Query: 193 PSCIHRLTF 201 PS IHR +F Sbjct: 240 PSPIHRASF 248 >gi|288553081|ref|YP_003425016.1| ribonuclease H [Bacillus pseudofirmus OF4] gi|288544241|gb|ADC48124.1| ribonuclease H [Bacillus pseudofirmus OF4] Length = 260 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 81/191 (42%), Positives = 110/191 (57%), Gaps = 3/191 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + VAG+DEVGRG LAGPV AA+IL + G+ DSKK+S +KRE E+ Sbjct: 63 EREAWQNGYNYVAGLDEVGRGPLAGPVTAAAVILPKDASLPGLTDSKKLSKEKREFFVEE 122 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A+ S+ ID+ NI++AT A+ AV NL + P L+D + LP Sbjct: 123 IKKQALAYSVVFVDADEIDRVNIYEATKLAMQRAVNNLDIQPDYLLLDAMKLANSLP--Q 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD SL+IAA+S++AKV RD M K YP YGF HVGY T H + + G Sbjct: 181 ESLIKGDQKSLTIAASSVLAKVARDEYMVELEKVYPGYGFAKHVGYGTEVHLKAMNALGI 240 Query: 194 SCIHRLTFRPL 204 + HR +F+P+ Sbjct: 241 TKEHRKSFKPV 251 >gi|312278270|gb|ADQ62927.1| Ribonuclease HII [Streptococcus thermophilus ND03] Length = 255 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 82/195 (42%), Positives = 120/195 (61%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + + +AG+DEVGRG LAGPVV AA+IL G+NDSKKI K E +Y Sbjct: 60 YEKSLCARGIELIAGVDEVGRGPLAGPVVAAAVILPKLCKIKGLNDSKKIPKSKHEAIYN 119 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 ++ A+ + I + ID NI++AT A+ A+E L P LID ++ DLP + Sbjct: 120 QVMKEAVAVGIGIKDNYVIDDVNIYEATKLAMIEAIEKLNPQPEHLLIDAMNL--DLPIE 177 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ SLSIAAASI+AKVTRD++M +++P Y F + GY T +H I + G Sbjct: 178 QTSIIKGDANSLSIAAASIVAKVTRDKMMADYEQEFPGYAFAKNAGYGTKEHLSGIDKFG 237 Query: 193 PSCIHRLTFRPLRNL 207 + IHR +F P++++ Sbjct: 238 VTPIHRRSFEPIKSI 252 >gi|294012729|ref|YP_003546189.1| ribonuclease HII [Sphingobium japonicum UT26S] gi|292676059|dbj|BAI97577.1| ribonuclease HII [Sphingobium japonicum UT26S] Length = 199 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 84/202 (41%), Positives = 123/202 (60%), Gaps = 5/202 (2%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 P F E ++ + VAG+DE GRG LAGPVV AA+IL + P G+NDSK++S +R Sbjct: 1 MPDFAHE-LLHHPGL--VAGVDEAGRGPLAGPVVAAAVILRQEDCPEGLNDSKQLSAARR 57 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 L +I + A+ + AS + ID NI AT+ A+ AVE L L+DG P+ Sbjct: 58 AVLEGEIKARALCWGLGVASVEEIDSINILWATMLAMTRAVEALAHDCAHVLVDGNRCPQ 117 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + A+++GD+ LSIAAASI+AK RDR+M A +P YG++S+ GY +A+H Sbjct: 118 -WRWASTAIVEGDAKCLSIAAASILAKEARDRMMVEAAATHPHYGWESNKGYGSARHLAA 176 Query: 188 IKEKGPSCIHRLTFRPLRNLSV 209 ++E GP+ +HR +F P+ LS+ Sbjct: 177 LREHGPTPLHRRSFAPVAQLSL 198 >gi|229829016|ref|ZP_04455085.1| hypothetical protein GCWU000342_01101 [Shuttleworthia satelles DSM 14600] gi|229792179|gb|EEP28293.1| hypothetical protein GCWU000342_01101 [Shuttleworthia satelles DSM 14600] Length = 260 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 86/189 (45%), Positives = 116/189 (61%), Gaps = 3/189 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E ++ VAG+DEVGRG LAGP+V AA+IL + GINDSKK+S KKREELY Sbjct: 64 FEREAW-QSCQYVAGMDEVGRGPLAGPLVTAAVILPRGHRILGINDSKKVSAKKREELYR 122 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I A+ + I S ID+ N+ +AT +A+ AV L P L D ++P L + Sbjct: 123 QIMEEALAVGIGMNSPGRIDQINVLQATYEAMREAVSQLDPAPELVLNDAVTVP-GLLVR 181 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +I GD+ S+SI AASI+AKVTRD +M K YP YGF + GY TA H + +++ G Sbjct: 182 QIPIIHGDARSISIGAASIVAKVTRDHMMEDYDKTYPGYGFAKNKGYGTADHIRALRKMG 241 Query: 193 PSCIHRLTF 201 P+ IHR +F Sbjct: 242 PTPIHRRSF 250 >gi|254480314|ref|ZP_05093562.1| ribonuclease HII [marine gamma proteobacterium HTCC2148] gi|214039876|gb|EEB80535.1| ribonuclease HII [marine gamma proteobacterium HTCC2148] Length = 200 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 86/183 (46%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG LAG VV AA+ILDP+N G+ DSKK+S +REEL I AI SI+ Sbjct: 14 IAGVDEVGRGPLAGDVVTAAVILDPSNPVEGLRDSKKLSESRREELAIIIREKAIAWSIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID+ NI +A+L A+ AVE L P L+DG +P+ + V+KGD Sbjct: 74 RASVAEIDELNILQASLLAMKRAVEALTPQPGYVLVDGNRLPQ-WSYPSEPVVKGDDRVP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV RD + +KYP YGF +H GYPTA H ++ G + +HR ++ P+ Sbjct: 133 AIAAASILAKVQRDNELVALEQKYPGYGFAAHKGYPTAAHLHALQSLGVTPVHRRSYAPV 192 Query: 205 RNL 207 R + Sbjct: 193 RRI 195 >gi|71279195|ref|YP_268311.1| ribonuclease HII [Colwellia psychrerythraea 34H] gi|97182381|sp|Q485F4|RNH2_COLP3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|71144935|gb|AAZ25408.1| ribonuclease HII [Colwellia psychrerythraea 34H] Length = 217 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 91/207 (43%), Positives = 116/207 (56%), Gaps = 18/207 (8%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P FE + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR Sbjct: 8 PDFEYPIA------YCIAGVDEVGRGPLVGDVVTAAVILDPDNPIEGLMDSKKLSEKKRN 61 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-- 126 L +I AI S+ AS Q ID NI AT+ A+ AVE L V P L+DG P Sbjct: 62 LLSLEIKEKAISWSLGRASPQEIDTLNILHATMLAMQRAVEGLNVEPDFVLVDGNRCPTF 121 Query: 127 ---------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 ++L + AV+KGD+ I+AASIIAKV RD M K +P+YGF H Sbjct: 122 LCNASESNQQNLKIASQAVVKGDARVTEISAASIIAKVARDNEMIALDKLHPEYGFAKHK 181 Query: 178 GYPTAKHQQVIKEKGPSCIHRLTFRPL 204 GYPT H + I E G +R +F+P+ Sbjct: 182 GYPTKLHLEKIIEHGVLDCYRQSFKPV 208 >gi|78066784|ref|YP_369553.1| ribonuclease HII [Burkholderia sp. 383] gi|97182346|sp|Q39F57|RNH2_BURS3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|77967529|gb|ABB08909.1| Ribonuclease H [Burkholderia sp. 383] Length = 214 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 90/182 (49%), Positives = 121/182 (66%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LYE I + ++ + Sbjct: 27 IVCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLDDSKALSAKKRDALYELIVARSLSYCV 86 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS ID NI AT+ A+ AVE L V+P A IDG P L +A A++ GD++ Sbjct: 87 ASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LTVRAEAIVSGDALV 145 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+++P YGF+ H GY TAKH ++E GP HR +F P Sbjct: 146 PSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAHRRSFAP 205 Query: 204 LR 205 +R Sbjct: 206 VR 207 >gi|260662114|ref|ZP_05863010.1| ribonuclease HII [Lactobacillus fermentum 28-3-CHN] gi|260553497|gb|EEX26389.1| ribonuclease HII [Lactobacillus fermentum 28-3-CHN] Length = 256 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 83/195 (42%), Positives = 119/195 (61%), Gaps = 3/195 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E + + VAGIDEVGRG LAGPVV A++LD G+ DSK++S +RE+ Sbjct: 59 RFRYENQLWQAGHQYVAGIDEVGRGPLAGPVVTCAVVLDSQFDLVGVTDSKQLSRHEREQ 118 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY +I A+ +S++ + Q ID+ NI+ AT A+ +V+ L P ++D +P D+ Sbjct: 119 LYLRILDEAVEVSLAVSPAQEIDRLNIYAATQTAMIRSVKALHHQPSHLIVDA--VPLDI 176 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +I+GD S+S+AAASI+AK RD LM I + YP YGF ++GY TA H ++ Sbjct: 177 PVPQTTLIRGDQKSISVAAASIVAKEYRDHLMAIYDRLYPGYGFKDNMGYGTAAHLAGLE 236 Query: 190 EKGPSCIHRLTFRPL 204 + G IHR TFRP+ Sbjct: 237 QLGACPIHRRTFRPV 251 >gi|302392411|ref|YP_003828231.1| Ribonuclease H [Acetohalobium arabaticum DSM 5501] gi|302204488|gb|ADL13166.1| Ribonuclease H [Acetohalobium arabaticum DSM 5501] Length = 315 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 80/198 (40%), Positives = 115/198 (58%), Gaps = 2/198 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + + + G+DE GRG LAGPV A +IL + G+NDSK++S KREE + Sbjct: 65 QFEDDLANRGYQLIGGVDEAGRGPLAGPVAAAVVILPEDIWMPGLNDSKQLSEAKREEFF 124 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 K+ A+ I + ID+ NI A A+ A+ NL+ P L+DG IPE + Sbjct: 125 AKLQEEAVDIGVGLVDSDRIDEVNIRNANYQAMREAISNLEQTPDYLLVDGEEIPE-IGI 183 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++ GD S+SIAAASIIAKVTRDR++ ++YP+Y F H GY TA H ++E Sbjct: 184 EQRRLVDGDQRSVSIAAASIIAKVTRDRMLVEYDQEYPEYNFVQHKGYGTADHIAALEEH 243 Query: 192 GPSCIHRLTFRPLRNLSV 209 GP IHR +F +R ++ Sbjct: 244 GPCPIHRYSFSKVREAAL 261 >gi|254420769|ref|ZP_05034493.1| ribonuclease HII [Brevundimonas sp. BAL3] gi|196186946|gb|EDX81922.1| ribonuclease HII [Brevundimonas sp. BAL3] Length = 213 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 89/199 (44%), Positives = 120/199 (60%), Gaps = 2/199 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P LE ++ ++ PV G+DE GRG AGPV AA+IL+P+++P GI+DSK ++ K+R Sbjct: 12 PTLALETVLIQRVNGPVCGVDEAGRGPWAGPVSAAAVILNPDDLPPGIDDSKALTEKRRA 71 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L +I + A+ + AS + I+ NI AT A+ AVE L V P +AL+DG Sbjct: 72 ALEPEIKARAVAWGVGFASVEEIEDLNILHATGLAMCRAVEQLAVQPAAALVDGN-YRFR 130 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LPC+ V+ GD +SLSIAAASI+AK RDRLM +YP YGF H GY HQ + Sbjct: 131 LPCEIQTVVGGDGLSLSIAAASILAKTARDRLMIDLDAQYPGYGFARHKGYNAPIHQAAL 190 Query: 189 KEKGPSCIHRLTFRPLRNL 207 K GP HR + P+R L Sbjct: 191 KTLGPCPAHRRGWSPIRAL 209 >gi|291569313|dbj|BAI91585.1| ribonuclease HII [Arthrospira platensis NIES-39] Length = 231 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 82/201 (40%), Positives = 111/201 (55%), Gaps = 5/201 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHK 66 ++L + + VAGIDEVGRGA GPVV AA+ L I G+ DSKK++ Sbjct: 7 TYQLPPAFEQLSWTAVAGIDEVGRGAWFGPVVAAAVQLSETTILELAAAGVKDSKKLTPT 66 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 R L I S AI I AS + ID+ NI +AT A+ +V L P+ L+DG + Sbjct: 67 LRASLSTLIRSKAIACGIGWASAREIDRLNILQATQLAMRRSVLKLDPPPQLCLVDGNRL 126 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 +L A++KGDS + IAA+SI+AKV RD LM + YP YG H GY T +H+ Sbjct: 127 IPNLSIPQQAIVKGDSHCIVIAASSILAKVWRDELMTRLDRTYPQYGLAKHKGYGTKQHK 186 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 Q ++ GP HR +F P+R Sbjct: 187 QALQSYGPCFHHRFSFAPVRQ 207 >gi|91784105|ref|YP_559311.1| ribonuclease HII [Burkholderia xenovorans LB400] gi|123358681|sp|Q13XD0|RNH2_BURXL RecName: Full=Ribonuclease HII; Short=RNase HII gi|91688059|gb|ABE31259.1| RNase HII [Burkholderia xenovorans LB400] Length = 248 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 89/184 (48%), Positives = 120/184 (65%), Gaps = 3/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-IS 82 V G+DE GRG LAGPVV AA+I DP G++DSK ++ KKR+ELY+KI A+ Sbjct: 30 IVCGVDEAGRGPLAGPVVAAAVIFDPAKPMIRGLDDSKVLTAKKRDELYDKIVDRALAYC 89 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+SAS + ID NI AT+ A+ AVE L V+P IDG P L ++ AVI GD++ Sbjct: 90 IASASVEEIDSLNILHATMLAMKRAVEGLSVVPTLVKIDGNRCPT-LSVRSEAVIGGDAL 148 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SI+AASI+AKVTRDR++ H+ +P YGF++H GY T +H ++E GP HR +F Sbjct: 149 VKSISAASILAKVTRDRMLLELHQAHPVYGFNAHAGYGTPQHLAALREHGPCEHHRRSFA 208 Query: 203 PLRN 206 P+R Sbjct: 209 PVRE 212 >gi|229824939|ref|ZP_04451008.1| hypothetical protein GCWU000182_00288 [Abiotrophia defectiva ATCC 49176] gi|229790942|gb|EEP27056.1| hypothetical protein GCWU000182_00288 [Abiotrophia defectiva ATCC 49176] Length = 255 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 88/189 (46%), Positives = 111/189 (58%), Gaps = 3/189 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E E + GIDEVGRG LAGPVV AA+I + I +NDSKK++ KREEL+ Sbjct: 62 FERQFCENGY--ICGIDEVGRGPLAGPVVAAAVIFPKDLIIPYVNDSKKLTEAKREELFN 119 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI + S + ID+ NI ++T +A+ AV L V P L+DG +L Sbjct: 120 HIMCEAISVGFGSVDNSRIDEINILQSTFEAMRKAVSELNVKPDIILVDGDKKIPELDIS 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A++ GD+ SLSIAAASI+AKV RDR M+ KYP Y F S+ GY + KH IKE G Sbjct: 180 QQAIVGGDAKSLSIAAASIVAKVVRDRYMKEMDIKYPMYDFASNKGYGSKKHLTGIKEFG 239 Query: 193 PSCIHRLTF 201 S IHR TF Sbjct: 240 ISPIHRKTF 248 >gi|77360940|ref|YP_340515.1| RNAse HII [Pseudoalteromonas haloplanktis TAC125] gi|97189191|sp|Q3IIW9|RNH2_PSEHT RecName: Full=Ribonuclease HII; Short=RNase HII gi|76875851|emb|CAI87072.1| RNAse HII [Pseudoalteromonas haloplanktis TAC125] Length = 200 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 81/192 (42%), Positives = 115/192 (59%), Gaps = 2/192 (1%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 + N+ +AG+DEVGRG L G VV AA+ILDP+ G+ DSKK++ KKR+ L +I Sbjct: 2 QIERPNVALIAGVDEVGRGPLVGDVVTAAVILDPSKPIAGLADSKKLTDKKRQALAIEIQ 61 Query: 77 SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 A+ + S ID+ NI AT+ A+ AVE L P IDG +P+ L A A Sbjct: 62 EKALCYAYGRCSPTEIDELNILHATMLAMTRAVEGLSTQPEFVFIDGNRLPK-LTMPAQA 120 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 ++KGDS+ I+AASI+AKV RD M K++P+YGF H GYPT H +++ G Sbjct: 121 IVKGDSLVAEISAASILAKVARDNEMVELDKRHPEYGFAGHKGYPTKAHFAALEQYGAIK 180 Query: 196 IHRLTFRPLRNL 207 HR +F+P++ + Sbjct: 181 EHRKSFKPVQRV 192 >gi|27377632|ref|NP_769161.1| ribonuclease HII [Bradyrhizobium japonicum USDA 110] gi|39932385|sp|Q89S84|RNH2_BRAJA RecName: Full=Ribonuclease HII; Short=RNase HII gi|27350777|dbj|BAC47786.1| ribonuclease HII [Bradyrhizobium japonicum USDA 110] Length = 261 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 95/201 (47%), Positives = 129/201 (64%), Gaps = 1/201 (0%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 + P + F E + ++ +WPVAG DE GRG LAGPVV AA+ILDP+ IP GI+DSK++ Sbjct: 22 EAAPVKASFRRERALIKRGIWPVAGCDEAGRGPLAGPVVAAAVILDPDRIPRGIDDSKRL 81 Query: 64 SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 + ++RE+L++KI ++A +S++ AS ID+ NI +A+L A+ AV L PR +DGR Sbjct: 82 TAEQREKLFDKICATAQVSVAVASPARIDRDNILRASLWALKRAVVALPEAPRHVFVDGR 141 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 D C AVI GD I LSIAAASI+AKVTRDRLM + P YGF+ H GY + Sbjct: 142 D-RLDTACDCEAVIGGDGIVLSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYGVPE 200 Query: 184 HQQVIKEKGPSCIHRLTFRPL 204 H + GP+ HR F P+ Sbjct: 201 HLDALNRLGPTVHHRSFFAPV 221 >gi|194467936|ref|ZP_03073922.1| Ribonuclease H [Lactobacillus reuteri 100-23] gi|194452789|gb|EDX41687.1| Ribonuclease H [Lactobacillus reuteri 100-23] Length = 256 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 81/195 (41%), Positives = 116/195 (59%), Gaps = 3/195 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F+ E EK VAG+DEVGRG LAGPVV A+IL+ + G+ DSK+++ +RE Sbjct: 59 RFKYEKYYWEKGCQYVAGMDEVGRGPLAGPVVTCAVILNADFDLIGVTDSKQLTRHEREN 118 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY +I A+ +SI+ ID+ NI+ AT DA+ AV +L P ++D +P + Sbjct: 119 LYLRIVDEAVEVSIAVNDAPVIDQMNIYAATQDAMIRAVNHLHHRPDHLIVDA--VPLAI 176 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +IKGD S+S+AAASI+AK RD LMR YP YGF ++GY T +H ++ Sbjct: 177 DIPQTTLIKGDQKSISVAAASIVAKEYRDHLMRDYDYVYPGYGFAQNMGYGTKEHLVGLE 236 Query: 190 EKGPSCIHRLTFRPL 204 + G + IHR +F P+ Sbjct: 237 KMGATPIHRRSFNPV 251 >gi|295676811|ref|YP_003605335.1| Ribonuclease H [Burkholderia sp. CCGE1002] gi|295436654|gb|ADG15824.1| Ribonuclease H [Burkholderia sp. CCGE1002] Length = 249 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 88/184 (47%), Positives = 117/184 (63%), Gaps = 3/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-IS 82 V G+DE GRG LAGPVV AA+I DP G++DSK ++ KRE LY+KI A+ Sbjct: 31 IVCGVDEAGRGPLAGPVVAAAVIFDPTRPMIRGLDDSKALTALKREALYDKIVDRALAYC 90 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 ++SA+ + ID NI AT+ A+ AVE L V+P IDG P L ++ AVI GD++ Sbjct: 91 VASATVEEIDSLNILHATMLAMKRAVEGLSVVPTLVKIDGNRCPT-LSIRSEAVIGGDAL 149 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SI+AASI+AKVTRDR++ H YP YGFD+H GY T +H ++E GP HR +F Sbjct: 150 VKSISAASILAKVTRDRMLVELHHAYPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFA 209 Query: 203 PLRN 206 P+R Sbjct: 210 PVRE 213 >gi|254672745|emb|CBA06746.1| Ribonuclease HII [Neisseria meningitidis alpha275] gi|325203313|gb|ADY98766.1| ribonuclease HII [Neisseria meningitidis M01-240355] Length = 194 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 82/182 (45%), Positives = 109/182 (59%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I + A+ +++ Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPEIFDLPGLTDSKKLSEKKRDALAEMIKNQAVAWHVAA 65 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 ASPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NL 207 NL Sbjct: 186 NL 187 >gi|288941772|ref|YP_003444012.1| Ribonuclease H [Allochromatium vinosum DSM 180] gi|288897144|gb|ADC62980.1| Ribonuclease H [Allochromatium vinosum DSM 180] Length = 206 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 89/183 (48%), Positives = 112/183 (61%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DE GRG LAGPV AA+ILDP GI DSKK+S +RE L I A+ S+ Sbjct: 12 LIAGVDEAGRGPLAGPVCAAAVILDPARPIAGIGDSKKLSPARRERLEPLIRDQALAWSV 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + AS + ID+ NI +ATL A+ AVE+LQ+ P ALIDG P+ L A A++ GD Sbjct: 72 AWASAEEIDRLNILQATLLAMRRAVESLQIRPVKALIDGNRCPQ-LDIAAEAIVGGDGSV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I AASI+AKV RDR M + P YGF H GYPT +H I+ GP HRL+F P Sbjct: 131 PAIGAASILAKVARDRFMLELDAECPGYGFAKHKGYPTREHLNAIERLGPCRWHRLSFAP 190 Query: 204 LRN 206 L Sbjct: 191 LSK 193 >gi|238923885|ref|YP_002937401.1| ribonuclease H [Eubacterium rectale ATCC 33656] gi|238875560|gb|ACR75267.1| ribonuclease H [Eubacterium rectale ATCC 33656] Length = 253 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 86/189 (45%), Positives = 116/189 (61%), Gaps = 4/189 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + GIDEVGRG LAGPVV A+IL + INDSKK++ KR+ELY+ Sbjct: 63 YEREYAS--YAHICGIDEVGRGPLAGPVVACAVILPKDCDILYINDSKKLTAAKRDELYD 120 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I A+ + I ASH+ ID+ NI +AT +A+ A+ L P L D +IP + + Sbjct: 121 VIMEKAVSVGIGMASHERIDEINILQATYEAMRQAIGKLDPAPDLTLNDAVTIP-GVDIK 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +IKGD+ S+SI AASI+AKVTRDR+M YP YGF S+ GY +A+H + +K+ G Sbjct: 180 QVPIIKGDAKSISIGAASIVAKVTRDRMMVEYDNIYPGYGFASNKGYGSAEHIKALKKIG 239 Query: 193 PSCIHRLTF 201 PS IHR +F Sbjct: 240 PSPIHRASF 248 >gi|303258069|ref|ZP_07344077.1| ribonuclease HII [Burkholderiales bacterium 1_1_47] gi|330998718|ref|ZP_08322447.1| ribonuclease HII [Parasutterella excrementihominis YIT 11859] gi|302859088|gb|EFL82171.1| ribonuclease HII [Burkholderiales bacterium 1_1_47] gi|329576457|gb|EGG57969.1| ribonuclease HII [Parasutterella excrementihominis YIT 11859] Length = 213 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 83/181 (45%), Positives = 119/181 (65%), Gaps = 2/181 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 V G+DE GRG LAGPVV AA+IL+P++ G+ DSKK++ RE L E+I + A+ +I Sbjct: 15 LVCGVDEAGRGPLAGPVVAAAVILNPDHPIEGLRDSKKLTAHAREVLAEQIKTHALAWAI 74 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + +S ID+ NI +AT+ A+ AV L P L+DG +PE LP +A ++KGD + Sbjct: 75 AESSVADIDRMNILQATMAAMRKAVLQLDPKPDLVLVDGNRLPE-LPFRAEPIVKGDDLI 133 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AK RD LM+I YP YGF+ H GY TA H +++++ GP +HR+TF P Sbjct: 134 PEISAASILAKTYRDALMKILGGMYPKYGFEQHAGYGTAHHLKMLEKWGPCPVHRMTFGP 193 Query: 204 L 204 + Sbjct: 194 V 194 >gi|58584899|ref|YP_198472.1| ribonuclease HII [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|73917838|sp|Q5GRZ4|RNH2_WOLTR RecName: Full=Ribonuclease HII; Short=RNase HII gi|58419215|gb|AAW71230.1| Ribonuclease HII [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 203 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 86/198 (43%), Positives = 121/198 (61%), Gaps = 6/198 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKR 68 P F LE + +AG+DEVGRG LAGPV+ AA++ + N I GINDSKK++ K R Sbjct: 4 PDFTLENKLS----GVIAGVDEVGRGPLAGPVMSAAVVFTNRNIIIEGINDSKKLTAKNR 59 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + LYEKI S A I AS I+ +NI +AT ++ A+ NL + L+DG P Sbjct: 60 QVLYEKIISVAKFGIGMASVAEINSYNILQATKLSMERALVNLGIELDYVLVDGNQ-PPK 118 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + Q +++KGDS+S+S+AAASI+AKV RD+LM+ H +YP+Y + + GY T H I Sbjct: 119 VKWQVKSIVKGDSLSVSVAAASIVAKVARDQLMQELHNQYPEYNWYKNKGYGTKGHIDAI 178 Query: 189 KEKGPSCIHRLTFRPLRN 206 G + HR +F P+ N Sbjct: 179 NLYGVTEHHRKSFAPILN 196 >gi|331091010|ref|ZP_08339852.1| hypothetical protein HMPREF9477_00495 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405232|gb|EGG84768.1| hypothetical protein HMPREF9477_00495 [Lachnospiraceae bacterium 2_1_46FAA] Length = 252 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 96/203 (47%), Positives = 126/203 (62%), Gaps = 8/203 (3%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 I E +E E + E + GIDEVGRG LAGPVV A+IL + + +NDSKK+S Sbjct: 56 IEEMSRYEQENCMEE----YICGIDEVGRGPLAGPVVAGAVILPKDEMILYLNDSKKLSE 111 Query: 66 KKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKREELY+ I A+ I S ID+ NI +AT +A+ A++NL+V P L D + Sbjct: 112 KKREELYDIIMERAVAAGIGIVSPARIDEINILQATYEAMRMAIDNLKVQPTLLLNDAVT 171 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IP + + +IKGD+ S+SIAAASIIAKVTRDRLM+ K P Y F S+ GY +A H Sbjct: 172 IP-SVNIRQIPIIKGDAKSVSIAAASIIAKVTRDRLMKEYDKVIPGYDFASNKGYGSAAH 230 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 Q +KE G + IHR TF ++N Sbjct: 231 IQALKENGATLIHRKTF--IKNF 251 >gi|297620937|ref|YP_003709074.1| Ribonuclease HII [Waddlia chondrophila WSU 86-1044] gi|297376238|gb|ADI38068.1| Ribonuclease HII [Waddlia chondrophila WSU 86-1044] Length = 254 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 84/196 (42%), Positives = 112/196 (57%), Gaps = 3/196 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E R AGIDE GRG LAGPVV +A IL G+NDSKK++ +R+ +E Sbjct: 59 YENEARRMGYSHPAGIDEAGRGPLAGPVVASACILPAGYHLSGLNDSKKLTPLQRKRFFE 118 Query: 74 KITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +T + I I A+H+ ID N+ +AT A+ AV+ L+ P LID + E P Sbjct: 119 VLTQDPNVCIGIGIATHEEIDTVNVLEATKLAMCKAVDMLKPQPDFLLIDAVKLSEQ-PI 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD +IAAAS+IAK TRDR+M K+P YGF H GY T H++ IK Sbjct: 178 PFLNLIKGDCRVQAIAAASVIAKETRDRIMDEYDVKWPMYGFGRHKGYGTEAHREAIKRH 237 Query: 192 GPSCIHRLTFRPLRNL 207 GP IHR TF P++++ Sbjct: 238 GPCPIHRKTFEPIKSM 253 >gi|154503287|ref|ZP_02040347.1| hypothetical protein RUMGNA_01111 [Ruminococcus gnavus ATCC 29149] gi|153795954|gb|EDN78374.1| hypothetical protein RUMGNA_01111 [Ruminococcus gnavus ATCC 29149] Length = 250 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 88/184 (47%), Positives = 117/184 (63%), Gaps = 4/184 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + GIDEVGRG LAGPVV AA+IL + +NDSKK+S K+REELY++I AI I I Sbjct: 69 YICGIDEVGRGPLAGPVVAAAVILPKDAEILYLNDSKKLSAKRREELYDEIQEKAIAIGI 128 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI +AT +A+ A+ L V P L D +IPE + +IKGD+ S Sbjct: 129 GMAGPARIDEINILQATYEAMRQAIGQLSVEPEVLLNDAVTIPEVV-IPQVPIIKGDAKS 187 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +SIAAAS+IAKVTRDRLM + YGF + GY +A+H +++ GP+ IHR TF Sbjct: 188 VSIAAASVIAKVTRDRLMEEYDQVLAGYGFADNKGYGSAEHIAALRKLGPTPIHRRTF-- 245 Query: 204 LRNL 207 ++N Sbjct: 246 IKNF 249 >gi|109897588|ref|YP_660843.1| ribonuclease H [Pseudoalteromonas atlantica T6c] gi|123171510|sp|Q15WE9|RNH2_PSEA6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|109699869|gb|ABG39789.1| RNase HII [Pseudoalteromonas atlantica T6c] Length = 197 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 84/183 (45%), Positives = 114/183 (62%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DEVGRG L G VV AA+ILDP G+ DSKKIS KKR L++ I +A+ + Sbjct: 3 QLIAGVDEVGRGPLVGDVVTAAVILDPAKPIAGLADSKKISEKKRLALFDIIMQNALAVC 62 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + AS Q ID+ NI AT+ A+ AV+ L P +DG P + + AV+KGDS+ Sbjct: 63 VGRASPQEIDELNILHATMLAMKRAVQGLATQPTFVRVDGNRCP-NWDYASEAVVKGDSL 121 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASIIAKVTRD M H +P+YGF H GYPT H + + E GP +R++F+ Sbjct: 122 FAEISAASIIAKVTRDAEMSELHNAHPEYGFAQHKGYPTKAHLEKLAELGPLSQYRMSFK 181 Query: 203 PLR 205 P++ Sbjct: 182 PVQ 184 >gi|222153077|ref|YP_002562254.1| ribonuclease HII [Streptococcus uberis 0140J] gi|254807991|sp|B9DS69|RNH2_STRU0 RecName: Full=Ribonuclease HII; Short=RNase HII gi|222113890|emb|CAR42059.1| ribonuclease HII [Streptococcus uberis 0140J] Length = 257 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 82/211 (38%), Positives = 121/211 (57%), Gaps = 6/211 (2%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 M + E ++ ++ +AGIDEVGRG LAGPVV A +IL + G+NDS Sbjct: 48 MVDEELRLDKMLSYEKVLYQEGFSLIAGIDEVGRGPLAGPVVAACVILPIDCKIKGLNDS 107 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPR 116 KKI K +++ I A+ I I + ID NI++AT A+ A++N++ P Sbjct: 108 KKIPKSKHLSIFQAIQERALGIGIGIVDNHVIDDINIYQATKVAMIEAIKNIKGDVTEPD 167 Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 LID ++ + P ++IKGD+ S+SIAAASI+AKVTRDRLM K +P Y F + Sbjct: 168 YLLIDAMTL--ETPIPQQSIIKGDANSMSIAAASIVAKVTRDRLMMDYEKAFPGYDFAKN 225 Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 GY T H +K+ G + IHR +F P++++ Sbjct: 226 AGYGTTSHLNGLKQFGVTPIHRTSFEPIKSM 256 >gi|218767115|ref|YP_002341627.1| ribonuclease HII [Neisseria meningitidis Z2491] gi|11387099|sp|Q9JX40|RNH2_NEIMA RecName: Full=Ribonuclease HII; Short=RNase HII gi|121051123|emb|CAM07394.1| ribonuclease HII [Neisseria meningitidis Z2491] gi|319411322|emb|CBY91733.1| ribonuclease HII (RNase HII) [Neisseria meningitidis WUE 2594] Length = 194 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 80/182 (43%), Positives = 108/182 (59%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I + A+ +++ Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKNQAVAWHVAA 65 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 AGPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +++ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALEKYGVLPEHRRDFAPVR 185 Query: 206 NL 207 NL Sbjct: 186 NL 187 >gi|238784894|ref|ZP_04628894.1| Ribonuclease HII [Yersinia bercovieri ATCC 43970] gi|238714211|gb|EEQ06223.1| Ribonuclease HII [Yersinia bercovieri ATCC 43970] Length = 183 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 83/180 (46%), Positives = 112/180 (62%), Gaps = 2/180 (1%) Query: 29 IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSAS 87 +DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++IT A+ S+ A Sbjct: 1 MDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEITDKALSWSLGRAE 60 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 + ID+ NI AT+ A+ AV L + P LIDG P+ L + AV+KGDS I+ Sbjct: 61 PEEIDRLNILHATMLAMQRAVAGLHITPDYVLIDGNRCPK-LAMPSLAVVKGDSRVAEIS 119 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 AASI+AKVTRDR M + +P+YGF H GYPTA H + + G + HR +F P++ + Sbjct: 120 AASILAKVTRDREMTELDRHFPEYGFAQHKGYPTAVHLEKLSAFGATEHHRRSFGPVKRV 179 >gi|284051073|ref|ZP_06381283.1| ribonuclease HII [Arthrospira platensis str. Paraca] Length = 223 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 82/201 (40%), Positives = 111/201 (55%), Gaps = 5/201 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHK 66 ++L + + VAGIDEVGRGA GPVV AA+ L I G+ DSKK++ Sbjct: 7 TYQLPPAFEQLSWTAVAGIDEVGRGAWFGPVVAAAVQLSETTILELAAAGVKDSKKLTPT 66 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 R L I S AI I AS + ID+ NI +AT A+ +V L P+ L+DG + Sbjct: 67 LRASLSTLIRSKAIACGIGWASAREIDRLNILQATQLAMRRSVLKLDPPPQLCLVDGNRL 126 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 +L A++KGDS + IAA+SI+AKV RD LM + YP YG H GY T +H+ Sbjct: 127 IPNLSIPQQAIVKGDSHCIVIAASSILAKVWRDELMTRLDRTYPQYGLAKHKGYGTKQHK 186 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 Q ++ GP HR +F P+R Sbjct: 187 QALQSYGPCFHHRFSFAPVRQ 207 >gi|308274702|emb|CBX31301.1| Ribonuclease HII [uncultured Desulfobacterium sp.] Length = 214 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 118/197 (59%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E EK +AG+DE GRG +AGPVV AA+IL + G+ DSKK++ KKR+ L Sbjct: 6 WAYELSAFEKGYNKIAGVDEAGRGPIAGPVVSAAVILPFSYPIEGVTDSKKLTPKKRDYL 65 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y I A+ I I I++ NI +A+L ++ AV+NL LIDG P Sbjct: 66 YNIIYERAVSIGIGIVDPAEIERINILRASLLSMSIAVQNLSPESDYLLIDGI-FPIPHT 124 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + GDS+SLS+AAASI+AKVTRDRLM H +YP+YGF H GYPT +H++ I+ Sbjct: 125 LSQQPIPHGDSLSLSVAAASIVAKVTRDRLMERYHYEYPEYGFIKHKGYPTKEHKEAIRR 184 Query: 191 KGPSCIHRLTFRPLRNL 207 G IHR +F+ ++ + Sbjct: 185 SGCCPIHRRSFKGVKEV 201 >gi|225374458|ref|ZP_03751679.1| hypothetical protein ROSEINA2194_00073 [Roseburia inulinivorans DSM 16841] gi|225213696|gb|EEG96050.1| hypothetical protein ROSEINA2194_00073 [Roseburia inulinivorans DSM 16841] Length = 253 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 91/195 (46%), Positives = 121/195 (62%), Gaps = 6/195 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + GIDEVGRG LAGPVV A+IL + INDSKK+S KREELY+ Sbjct: 63 YEREYADYGY--ICGIDEVGRGPLAGPVVAGAVILPKDCDILYINDSKKLSAAKREELYD 120 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I A+ + I AS Q ID+ NI +AT +A+ A+ L V P L D +IP + + Sbjct: 121 VIMEKAVAVGIGMASSQRIDEINILQATYEAMREAISKLSVKPDILLNDAVTIP-GVSIR 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +IKGD+ S+SI AASI+AKVTRDRLM K P YGF S+ GY +A+H + ++E G Sbjct: 180 QVPIIKGDAKSISIGAASIVAKVTRDRLMVEYDKILPQYGFASNKGYGSAEHIRALQEAG 239 Query: 193 PSCIHRLTFRPLRNL 207 PS IHR++F ++N Sbjct: 240 PSPIHRVSF--IKNF 252 >gi|261391728|emb|CAX49177.1| ribonuclease HII (RNase HII) [Neisseria meningitidis 8013] Length = 194 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 82/182 (45%), Positives = 108/182 (59%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I + A +S+ Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDTLAEMIKNQAAAWHVSA 65 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A+ + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 ATPEEIASLNILHATMLAMKRAVDGLVVHPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NL 207 NL Sbjct: 186 NL 187 >gi|120610517|ref|YP_970195.1| ribonuclease HII [Acidovorax citrulli AAC00-1] gi|189043527|sp|A1TN83|RNH2_ACIAC RecName: Full=Ribonuclease HII; Short=RNase HII gi|120588981|gb|ABM32421.1| RNase HII [Acidovorax citrulli AAC00-1] Length = 240 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 81/182 (44%), Positives = 116/182 (63%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82 VAG+DE GRG LAGPVV AA+ILD G+ DSK ++ +RE L+++I + A+ S Sbjct: 21 GLVAGVDEAGRGPLAGPVVAAAVILDELQPIEGLADSKTLTAARREALFDEIRAKALCCS 80 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 ++ A+ + ID NI +AT+ A+ AV L++ P L+DG +P L A A++KGD++ Sbjct: 81 VAEATVEEIDTLNILQATMLAMRRAVAGLRLKPVRVLVDGNRLPP-LDVPAEAIVKGDAL 139 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKVTRDR H+ YP YGF SH GY TA+H ++ G HR +F Sbjct: 140 VQAISAASILAKVTRDRWCAQLHEAYPHYGFASHKGYGTAEHMAALQAHGACPEHRRSFA 199 Query: 203 PL 204 P+ Sbjct: 200 PV 201 >gi|86605527|ref|YP_474290.1| ribonuclease HII [Synechococcus sp. JA-3-3Ab] gi|97189384|sp|Q2JW45|RNH2_SYNJA RecName: Full=Ribonuclease HII; Short=RNase HII gi|86554069|gb|ABC99027.1| ribonuclease HII [Synechococcus sp. JA-3-3Ab] Length = 221 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 88/204 (43%), Positives = 127/204 (62%), Gaps = 6/204 (2%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF---GINDSKKISH 65 +P + E + ++ M VAG+DEVGRGALAGPVV AA+IL + P G+ D K++ Sbjct: 14 QPSLKWEGSLWQQGMRRVAGVDEVGRGALAGPVVAAAVILPAHLDPEALSGVRDCKQLRP 73 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 +R E+I A+ + I SAS ID+ NI +ATL A+ A+ + + L+DG Sbjct: 74 PQRAHWAERIAQVALAVGIGSASAAEIDQLNIRQATLLAMQRALAQVGEV-EHILLDGLP 132 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + E L + A++KGD +SLSIAAASI+AKV RD LM+ +YP YG+ ++VGY T +H Sbjct: 133 LAE-LGSRQTALVKGDQLSLSIAAASIVAKVWRDTLMQSWDHQYPGYGWRTNVGYGTQEH 191 Query: 185 QQVIKEKGPSCIHRLTFRPLRNLS 208 + ++ GPS HR +F PLR+L Sbjct: 192 RLALQRLGPSPQHRRSFAPLRDLQ 215 >gi|42520908|ref|NP_966823.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila melanogaster] gi|99034585|ref|ZP_01314549.1| hypothetical protein Wendoof_01000635 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|73917837|sp|Q73G60|RNH2_WOLPM RecName: Full=Ribonuclease HII; Short=RNase HII gi|42410649|gb|AAS14757.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila melanogaster] Length = 198 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 87/198 (43%), Positives = 122/198 (61%), Gaps = 6/198 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKR 68 P F LE + +AG+DEVGRG LAGPV+ AA++ D N I GINDSKK++ + R Sbjct: 4 PDFTLENKLS----GVIAGVDEVGRGPLAGPVISAAVVFIDRNTIIDGINDSKKLTPQCR 59 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + LYEKITS A I AS + I+ +NI +AT ++ A+ +L + L+DG PE Sbjct: 60 QVLYEKITSVAKFGIGMASVEEINSYNILQATKLSMKRALIDLDLELDYVLVDGNQPPE- 118 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + Q +++ GD++S SIAAASI+AKVTRDRLM+ H K+P+Y + + GY T +H I Sbjct: 119 VKWQVKSIVNGDNLSTSIAAASIVAKVTRDRLMQELHNKHPEYNWYKNKGYGTKEHLNAI 178 Query: 189 KEKGPSCIHRLTFRPLRN 206 G + HR F P+ Sbjct: 179 GLYGITEHHRKNFAPISR 196 >gi|56416548|ref|YP_153622.1| ribonuclease HII [Anaplasma marginale str. St. Maries] gi|56387780|gb|AAV86367.1| ribonuclease HII [Anaplasma marginale str. St. Maries] Length = 339 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 91/205 (44%), Positives = 125/205 (60%), Gaps = 2/205 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKI 63 + P F +E +R + + G+DEVG GA+AGPVV AA+ L + I DSK + Sbjct: 101 MNRMPSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKAL 160 Query: 64 SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 S KKREEL+ KIT+ A + A + I++HNI A+ ++ A++NL V L+DG Sbjct: 161 SSKKREELFCKITAHAKYGVGFARVREIEQHNILVASHISMKRALQNLGVKADLVLVDGS 220 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 P LP ++KGDSIS SIAAASIIAKVTRDR MR H++YP+Y ++ + GY T Sbjct: 221 RAPAGLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKA 280 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLS 208 H Q +K G + HR TF P++ LS Sbjct: 281 HMQSLKLYGKTAQHRSTFAPVKQLS 305 >gi|86142121|ref|ZP_01060645.1| ribonuclease HII [Leeuwenhoekiella blandensis MED217] gi|85831684|gb|EAQ50140.1| ribonuclease HII [Leeuwenhoekiella blandensis MED217] Length = 200 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 77/187 (41%), Positives = 108/187 (57%), Gaps = 1/187 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 +N+ GIDE GRG LAGPV AA+IL + + DSK ++HK RE L I Sbjct: 6 YSQNILTECGIDEAGRGCLAGPVTAAAVILPQSFKNKILTDSKLLTHKSRELLRPVIEQE 65 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A+ I+ + ID+ NI A++ A++ A+E L+ P+ L+DG C +I Sbjct: 66 ALAFGIAHVFPEEIDEINILNASIKAMHLAIEKLKQQPQHILVDGNRFKPYKECSHECII 125 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGDS LSIAAAS++AK RDR M H ++P Y + + GYPT +H+Q IKE G + H Sbjct: 126 KGDSKFLSIAAASVLAKTERDRYMTDLHMQFPHYNWKKNKGYPTKEHRQAIKEFGITSHH 185 Query: 198 RLTFRPL 204 R +F+ L Sbjct: 186 RKSFKQL 192 >gi|325143205|gb|EGC65545.1| ribonuclease HII [Neisseria meningitidis 961-5945] gi|325197479|gb|ADY92935.1| ribonuclease HII [Neisseria meningitidis G2136] Length = 194 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 81/182 (44%), Positives = 108/182 (59%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I + A+ +++ Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPEIFDLPGLTDSKKLSEKKRDALAEMIKNQAVAWHVAA 65 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 AGPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NL 207 NL Sbjct: 186 NL 187 >gi|169335925|ref|ZP_02863118.1| hypothetical protein ANASTE_02360 [Anaerofustis stercorihominis DSM 17244] gi|169258663|gb|EDS72629.1| hypothetical protein ANASTE_02360 [Anaerofustis stercorihominis DSM 17244] Length = 379 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 87/190 (45%), Positives = 115/190 (60%), Gaps = 3/190 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + ++ +AGIDEVGRG LAGPVV AA++L + INDSKK+S +KREEL Sbjct: 65 AFENSLHDEGYKYIAGIDEVGRGPLAGPVVTAAVMLPKESNILYINDSKKLSSQKREELA 124 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 EKI AI +I + IDK NI AT +A+ AV+NL++ P LID + D+ Sbjct: 125 EKIKEEAISYAIGIKDNGIIDKINILNATKEAMLEAVDNLKIKPEILLIDAVHLNTDI-- 182 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + + +KGD SI AASI+AKV RD+LM K YP+YGF+ + GY T H + IK Sbjct: 183 KQESFVKGDENIYSIGAASILAKVYRDKLMEDYAKDYPEYGFEKNKGYGTFDHIEAIKNN 242 Query: 192 GPSCIHRLTF 201 G IHR +F Sbjct: 243 GLCPIHRSSF 252 >gi|291527941|emb|CBK93527.1| Ribonuclease HII [Eubacterium rectale M104/1] Length = 253 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 87/189 (46%), Positives = 118/189 (62%), Gaps = 4/189 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + GIDEVGRG LAGPVV A+IL + INDSKK++ KR+ELY+ Sbjct: 63 YEREYAS--YAHICGIDEVGRGPLAGPVVACAVILPKDCDILYINDSKKLTAAKRDELYD 120 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I A+ + I ASH+ ID+ NI +AT +A+ A++ L P L D +IP + + Sbjct: 121 VIMEKAVSVGIGMASHERIDEINILQATYEAMRQAIKKLDPAPDLTLNDAVTIP-GVDIK 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +IKGD+ S+SI AASI+AKVTRDR+M + YP YGF S+ GY +A+H + +KE G Sbjct: 180 QVPIIKGDAKSISIGAASIVAKVTRDRMMVEYDRIYPGYGFASNKGYGSAEHIKALKEIG 239 Query: 193 PSCIHRLTF 201 PS IHR +F Sbjct: 240 PSQIHRASF 248 >gi|253578396|ref|ZP_04855668.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850714|gb|EES78672.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 251 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 86/182 (47%), Positives = 121/182 (66%), Gaps = 2/182 (1%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 +++ + GIDEVGRG LAGPVV A+IL ++ +NDSKK+S KREELY+ I A+ Sbjct: 66 EHLGYLCGIDEVGRGPLAGPVVACAVILPQDSRILYLNDSKKLSASKREELYDVIMREAV 125 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 + I S + ID+ NI +AT +A+ AV L+V+P+ L D +IP+ + +IKG Sbjct: 126 SVGIGMRSPERIDEINILQATYEAMREAVSKLEVVPQLLLNDAVTIPQ-ITIPQVPIIKG 184 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D+ S+SIAAASI+AKVTRDR+M K +P+YGF S+ GY +A H +K+ G + IHR Sbjct: 185 DAKSVSIAAASIVAKVTRDRMMEEYDKVFPEYGFASNKGYGSADHIAALKKYGETPIHRK 244 Query: 200 TF 201 TF Sbjct: 245 TF 246 >gi|172060953|ref|YP_001808605.1| ribonuclease HII [Burkholderia ambifaria MC40-6] gi|238689161|sp|B1YS60|RNH2_BURA4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|171993470|gb|ACB64389.1| Ribonuclease H [Burkholderia ambifaria MC40-6] Length = 217 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 89/183 (48%), Positives = 121/183 (66%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LY+ I + A + Sbjct: 27 IVCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKALSAKKRDALYDLIVARASAFCV 86 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS ID NI AT+ A+ AVE L V+P A IDG P L +A A++ GD++ Sbjct: 87 ASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LTVRAEAIVSGDALV 145 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+++P YGF+ HVGY T +H ++E GP +HR +F P Sbjct: 146 PSISAASILAKVTRDRMLVDLHERFPVYGFNVHVGYSTPQHLAALREHGPCEVHRRSFAP 205 Query: 204 LRN 206 +R Sbjct: 206 VRE 208 >gi|293398148|ref|ZP_06642353.1| ribonuclease HII [Neisseria gonorrhoeae F62] gi|291611411|gb|EFF40481.1| ribonuclease HII [Neisseria gonorrhoeae F62] Length = 212 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 82/205 (40%), Positives = 112/205 (54%), Gaps = 3/205 (1%) Query: 6 IPERPHFELEAMVREKNMWPV--AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 +P F + N+ + AG+DE GRG L G V AA+IL G+ DSKK+ Sbjct: 1 MPSETLFRRHRTIPTGNIMHILTAGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKL 60 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S KKR+ L E I A+ +++++ + I NI AT+ A+ AV L P IDG Sbjct: 61 SEKKRDALAEMIKEQAVAWHVAASTPEEIASLNILHATMLAMKRAVYGLAARPEKIFIDG 120 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 IPE L A AV+KGDS + I+AAS++AK RD M ++ P YGFD H GY T Sbjct: 121 NRIPEHLGIPAEAVVKGDSKIIEISAASVLAKTARDAEMYALAQRRPQYGFDKHKGYGTK 180 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 +H + +K+ G HR F P+RNL Sbjct: 181 QHLEALKQYGVLPEHRRDFAPVRNL 205 >gi|222474916|ref|YP_002563331.1| ribonuclease HII (rnhB) [Anaplasma marginale str. Florida] gi|222419052|gb|ACM49075.1| ribonuclease HII (rnhB) [Anaplasma marginale str. Florida] Length = 339 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 91/205 (44%), Positives = 125/205 (60%), Gaps = 2/205 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKI 63 + P F +E +R + + G+DEVG GA+AGPVV AA+ L + I DSK + Sbjct: 101 MNRMPSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKAL 160 Query: 64 SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 S KKREEL+ KIT+ A + A + I++HNI A+ ++ A++NL V L+DG Sbjct: 161 SSKKREELFCKITAHARYGVGFARVREIEQHNILVASHISMKRALQNLGVKADLVLVDGS 220 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 P LP ++KGDSIS SIAAASIIAKVTRDR MR H++YP+Y ++ + GY T Sbjct: 221 RAPAGLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKA 280 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLS 208 H Q +K G + HR TF P++ LS Sbjct: 281 HMQSLKLYGKTAQHRSTFAPVKQLS 305 >gi|115352089|ref|YP_773928.1| ribonuclease HII [Burkholderia ambifaria AMMD] gi|122322850|sp|Q0BE29|RNH2_BURCM RecName: Full=Ribonuclease HII; Short=RNase HII gi|115282077|gb|ABI87594.1| Ribonuclease H [Burkholderia ambifaria AMMD] Length = 217 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 89/183 (48%), Positives = 121/183 (66%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LY+ I + A + Sbjct: 27 IVCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKALSAKKRDALYDLIVARASAFCV 86 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS ID NI AT+ A+ AVE L V+P A IDG P L +A A++ GD++ Sbjct: 87 ASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LTVRAEAIVSGDALV 145 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+++P YGF+ HVGY T +H ++E GP +HR +F P Sbjct: 146 PSISAASILAKVTRDRMLVDLHERFPVYGFNMHVGYSTPQHLAALREHGPCEVHRRSFAP 205 Query: 204 LRN 206 +R Sbjct: 206 VRE 208 >gi|115380723|ref|ZP_01467629.1| ribonuclease HII [Stigmatella aurantiaca DW4/3-1] gi|310820560|ref|YP_003952918.1| ribonuclease hII [Stigmatella aurantiaca DW4/3-1] gi|115362268|gb|EAU61597.1| ribonuclease HII [Stigmatella aurantiaca DW4/3-1] gi|309393632|gb|ADO71091.1| Ribonuclease HII [Stigmatella aurantiaca DW4/3-1] Length = 282 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 87/197 (44%), Positives = 120/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI-SHKKREE 70 E + E+ + VAG+DE G LAGPVV AA IL N G++DSKKI ++REE Sbjct: 67 LRYETELWEQGLERVAGVDEAGMAPLAGPVVAAAAILPRNYRLKGLDDSKKILDAERREE 126 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L + A+ ++ A + ID+ NI+ A L A+ AV L + P AL+D R IPE Sbjct: 127 LAAALKRDAVAWAVGIAEVEEIDRLNIYHAGLLAMRRAVLGLGLTPDYALVDARKIPEC- 185 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 PC +I+GD++S+SIAAAS++AK +RDR+M +YP YG H GYPT +H Q ++ Sbjct: 186 PCPQRGIIRGDALSMSIAAASVLAKTSRDRMMGELDARYPGYGLAVHKGYPTPQHVQALR 245 Query: 190 EKGPSCIHRLTFRPLRN 206 EKG IHR +F P+R Sbjct: 246 EKGVLPIHRRSFGPVRE 262 >gi|167758983|ref|ZP_02431110.1| hypothetical protein CLOSCI_01329 [Clostridium scindens ATCC 35704] gi|167663390|gb|EDS07520.1| hypothetical protein CLOSCI_01329 [Clostridium scindens ATCC 35704] Length = 219 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 119/195 (61%), Gaps = 7/195 (3%) Query: 17 MVREKNMW---PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 V EK + GIDEVGRG LAGPVV A+IL + +NDSKK+S KKRE LYE Sbjct: 27 SVYEKEYGACRYICGIDEVGRGPLAGPVVAGAVILPKDGSILYLNDSKKLSEKKREALYE 86 Query: 74 KITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I A+ I ID+ NI +AT +A+ A+ NL+V P L D +IP+ + + Sbjct: 87 EIMERAVATGIGIVGSARIDEINILQATYEAMRMAISNLKVEPDLLLNDAVTIPQ-VSIR 145 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +IKGD+ S+SIAAASIIAKVTRDRLM + P YGF S+ GY T H ++E G Sbjct: 146 QVPIIKGDAKSVSIAAASIIAKVTRDRLMVEYDQVLPGYGFASNKGYGTKAHIAGLRELG 205 Query: 193 PSCIHRLTFRPLRNL 207 PS IHR TF ++N Sbjct: 206 PSPIHRATF--IKNF 218 >gi|307107517|gb|EFN55760.1| hypothetical protein CHLNCDRAFT_23163 [Chlorella variabilis] Length = 311 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 81/198 (40%), Positives = 115/198 (58%), Gaps = 6/198 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P E E + ++ VAG+DE GRG LAGPVV AA ++ + G++DSKK+S ++RE Sbjct: 80 PSREFERELWQQGYARVAGVDEAGRGPLAGPVVAAACVVPEHVDIAGMDDSKKLSAQQRE 139 Query: 70 ELYEKITSS--AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 LY ++T + + + ID NI +A L A+ A L P L+DG +P+ Sbjct: 140 ALYAQLTGHPDVLWAACVVEAEEIDAINILQAALKAMEGAAAGLTAQPDFLLVDGNRLPK 199 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 ++ ++KGDS S IAAAS+IAKVTRDRLM H+ +P Y F H GY +H + Sbjct: 200 ----RSRPIVKGDSKSYCIAAASVIAKVTRDRLMEQHHEHWPQYNFAGHKGYCVPEHVEA 255 Query: 188 IKEKGPSCIHRLTFRPLR 205 I++ GP +HR TF P R Sbjct: 256 IRQHGPCPVHRRTFAPTR 273 >gi|149374423|ref|ZP_01892197.1| ribonuclease HII [Marinobacter algicola DG893] gi|149361126|gb|EDM49576.1| ribonuclease HII [Marinobacter algicola DG893] Length = 225 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 87/202 (43%), Positives = 121/202 (59%), Gaps = 5/202 (2%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + +RP E + + +AG+DEVGRG L G VV AA+IL+P G+ DSKK++ Sbjct: 1 MSKRPLPPFECQYQGR---LLAGVDEVGRGPLVGAVVTAAVILNPERPIPGLADSKKLTD 57 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 K+RE LYE+I A S+ ID+ NI +AT+ A+ AV L V P L+DG Sbjct: 58 KRREALYEQIIERAASWSLGRCEADEIDRLNIFQATMVAMERAVAGLHVEPEYVLVDGNR 117 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 P + V+KGDS +I+AASIIAKVTRDR M + H+++P+YGF SH GYPT H Sbjct: 118 CPR-WRWASEPVVKGDSRVEAISAASIIAKVTRDREMAVLHEEFPEYGFASHKGYPTPVH 176 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 + + G + HR +FRP++ Sbjct: 177 LEALGRLGATAYHRRSFRPVQE 198 >gi|153809167|ref|ZP_01961835.1| hypothetical protein BACCAC_03477 [Bacteroides caccae ATCC 43185] gi|149128143|gb|EDM19363.1| hypothetical protein BACCAC_03477 [Bacteroides caccae ATCC 43185] Length = 200 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 79/186 (42%), Positives = 106/186 (56%), Gaps = 3/186 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I AI ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEREAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI +A+ A++ AV+ L P LIDG + VIKGD LS Sbjct: 73 VSPEEIDEINILRASFLAMHRAVDQLSTRPEHLLIDGNRFNKYPGIPHTTVIKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL- 204 IAAASI+AK RD M H++YP Y ++ + GYPT KH+ I E G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPYYDWNRNKGYPTKKHRAAIAEHGTTPYHRMTFNLLG 192 Query: 205 -RNLSV 209 LS+ Sbjct: 193 GEQLSL 198 >gi|325983657|ref|YP_004296059.1| ribonuclease H [Nitrosomonas sp. AL212] gi|325533176|gb|ADZ27897.1| Ribonuclease H [Nitrosomonas sp. AL212] Length = 190 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 82/184 (44%), Positives = 107/184 (58%), Gaps = 2/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + G+DE GRG LAGPV A ++L+ G+ DSKK+S KR L I A SIS Sbjct: 2 ICGVDEAGRGPLAGPVYAACVVLNKTLTIDGLADSKKLSETKRNALAVIIKKLAKAWSIS 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS Q ID+ NI +A+L A+ AVE+L P LIDG P L C +++GDS+ Sbjct: 62 YASVQEIDRLNILQASLLAMKRAVESLPFTPDIVLIDGNQSPH-LHCPMRTIVRGDSLIP 120 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AK RD M+ H+ +P YGFD H GYPT H ++ G IHR +F P+ Sbjct: 121 EISAASILAKTARDAEMQRLHRHFPRYGFDKHKGYPTKVHLAALQRYGACAIHRQSFAPV 180 Query: 205 RNLS 208 R L Sbjct: 181 RTLQ 184 >gi|315127144|ref|YP_004069147.1| RNAse HII [Pseudoalteromonas sp. SM9913] gi|315015658|gb|ADT68996.1| RNAse HII [Pseudoalteromonas sp. SM9913] Length = 199 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 81/192 (42%), Positives = 115/192 (59%), Gaps = 2/192 (1%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 + N+ +AG+DEVGRG L G VV AA+IL+P G+ DSKK++ KKR+ L +I Sbjct: 2 QIERPNVTLIAGVDEVGRGPLVGDVVTAAVILNPAKPIAGLADSKKLTDKKRQLLAIEIK 61 Query: 77 SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 A+ +I S ID+ NI +AT+ A+ AVE L +P +DG +P+ L A A Sbjct: 62 EKALCYAIGRCSPSEIDELNILQATMLAMSRAVEALSTVPEFVFVDGNRLPK-LAMPAQA 120 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V+KGDS+ I+AASI+AKV RD M +YP YGF H GYPT H +++ G Sbjct: 121 VVKGDSLVAEISAASILAKVARDDEMIELDARYPQYGFAGHKGYPTKAHFAALEQYGAID 180 Query: 196 IHRLTFRPLRNL 207 HR +F+P++ + Sbjct: 181 EHRKSFKPVQRV 192 >gi|160939135|ref|ZP_02086486.1| hypothetical protein CLOBOL_04029 [Clostridium bolteae ATCC BAA-613] gi|158438098|gb|EDP15858.1| hypothetical protein CLOBOL_04029 [Clostridium bolteae ATCC BAA-613] Length = 222 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 93/205 (45%), Positives = 121/205 (59%), Gaps = 8/205 (3%) Query: 8 ERPHFELEAMV-REKNM---WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 E+ LEAM EK + GIDE GRG LAGPV A++L +NDSKK+ Sbjct: 14 EQEMARLEAMAEYEKEYDACTYICGIDEAGRGPLAGPVAAGAVVLPKGCRILYLNDSKKL 73 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S K+REEL+ +I A+ ++ AS ID+ NI +AT +A+ AV+ L V P L D Sbjct: 74 SEKRREELFLEIKEKAVAWNVGLASPARIDEINILQATYEAMREAVKGLSVKPEVLLNDA 133 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 +IP L +IKGD+ SLSIAAASI+AKVTRD +M + +P YGF H GY TA Sbjct: 134 VTIP-GLEGVQVPIIKGDAKSLSIAAASILAKVTRDHMMAEYEELFPGYGFAKHKGYGTA 192 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 H I+E GP IHR +F +RN+ Sbjct: 193 AHIAAIRELGPCPIHRRSF--IRNI 215 >gi|209527547|ref|ZP_03276049.1| Ribonuclease H [Arthrospira maxima CS-328] gi|209492035|gb|EDZ92388.1| Ribonuclease H [Arthrospira maxima CS-328] Length = 223 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 83/186 (44%), Positives = 109/186 (58%), Gaps = 5/186 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII 81 VAGIDEVGRGA GPVV AA+ L I G+ DSKK++H R L I S AI Sbjct: 31 VAGIDEVGRGAWFGPVVAAAVQLSETTILELAAAGVKDSKKLTHNDRLSLSTLIRSKAIA 90 Query: 82 S-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I AS + ID+ NI +AT A+ ++ LQ P+ L+DG + +L A++KGD Sbjct: 91 CQIGWASAREIDRLNILQATQLAMRRSILKLQPPPQFCLVDGNRLIPNLSIPQQAIVKGD 150 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S + IAA+SI+AKV RD LM + YP YGF H GY T +H+Q ++ GP HR + Sbjct: 151 SHCVVIAASSIVAKVWRDELMTRLDRTYPQYGFAQHKGYGTKQHKQALQSYGPCFHHRFS 210 Query: 201 FRPLRN 206 F P+R Sbjct: 211 FAPVRQ 216 >gi|254282787|ref|ZP_04957755.1| ribonuclease HII [gamma proteobacterium NOR51-B] gi|219678990|gb|EED35339.1| ribonuclease HII [gamma proteobacterium NOR51-B] Length = 204 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 86/193 (44%), Positives = 116/193 (60%), Gaps = 3/193 (1%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 + E++ VAG+DEVGRG LAG VV AA+IL + P GI DSKK+S K+R +L +I Sbjct: 5 NLFDERSGQRVAGVDEVGRGPLAGDVVAAAVILG-DVSPAGITDSKKLSPKRRAQLAVQI 63 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 + A SI AS ID+ NI +A+L A+ AVE L + P L+DG +P ++ Sbjct: 64 KAEACCWSIGRASVDEIDRLNILEASLLAMTRAVEGLSLRPDFILVDGNRLPR-WDYRSE 122 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 V+ GD I +I AASIIAKV RD + ++YP YGF H GYPT H + + G + Sbjct: 123 PVVGGDGIEPAIGAASIIAKVQRDEELIALDEQYPGYGFAQHKGYPTRAHLEALASLGVT 182 Query: 195 CIHRLTFRPLRNL 207 IHR +F P+R L Sbjct: 183 PIHRRSFAPVRRL 195 >gi|163750365|ref|ZP_02157605.1| ribonuclease HII [Shewanella benthica KT99] gi|161329855|gb|EDQ00841.1| ribonuclease HII [Shewanella benthica KT99] Length = 218 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 120/191 (62%), Gaps = 8/191 (4%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 AG+DEVGRG L G VV AA+ILDP N G+NDSKK++ KKRE L+ +I A+ IS Sbjct: 18 GLYAGVDEVGRGPLVGNVVTAAVILDPKNPILGLNDSKKLTEKKREALFTEIHEKALSIS 77 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-------EDLPCQAFA 135 + A+ + ID+ NI AT+ A+ AV L++ P L+DG P +L +A A Sbjct: 78 VGHATPEEIDELNILHATMLAMQRAVAGLEIKPVKVLVDGNRAPIFHHGDNTELALEAHA 137 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 ++KGD + I+AASI+AKV RDR M++ ++P YGF H GYPT H Q +++ G Sbjct: 138 IVKGDGLIAGISAASIVAKVIRDREMKLLDMEHPQYGFAKHKGYPTQAHFQALEQHGVLA 197 Query: 196 IHRLTFRPLRN 206 HR +FRP+R+ Sbjct: 198 EHRKSFRPVRD 208 >gi|186476082|ref|YP_001857552.1| ribonuclease HII [Burkholderia phymatum STM815] gi|184192541|gb|ACC70506.1| Ribonuclease H [Burkholderia phymatum STM815] Length = 249 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 89/184 (48%), Positives = 120/184 (65%), Gaps = 3/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-IS 82 V G+DE GRG LAGPVV AA+ILDP G+ DSK ++ KKR+ELYEKI A+ Sbjct: 32 VVCGVDEAGRGPLAGPVVAAAVILDPAKPRIRGLTDSKVLTAKKRDELYEKIIERALAYC 91 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 ++SAS + ID NI AT+ A+ AVE L+V P A IDG P L ++ A++ GD + Sbjct: 92 VASASVEEIDSLNILHATMLAMKRAVEGLRVTPTLAKIDGNRCP-SLSIRSEAIVSGDLL 150 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR++ H+ +P YGFD+H GY T +H ++E GP HR +F Sbjct: 151 VPCISAASILAKVTRDRMLLELHRMFPVYGFDAHAGYGTPQHLTALREHGPCEHHRRSFA 210 Query: 203 PLRN 206 P+R+ Sbjct: 211 PVRD 214 >gi|171318092|ref|ZP_02907261.1| Ribonuclease H [Burkholderia ambifaria MEX-5] gi|171096716|gb|EDT41601.1| Ribonuclease H [Burkholderia ambifaria MEX-5] Length = 217 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 90/183 (49%), Positives = 122/183 (66%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS-SAIISI 83 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LY+ I + S+ + Sbjct: 27 IVCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKALSAKKRDALYDLIVARSSAYCV 86 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS ID NI AT+ A+ AVE L V+P A IDG P L +A A++ GD++ Sbjct: 87 ASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LMVRAEAIVSGDALV 145 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+++P YGF+ HVGY T KH ++E GP +HR +F P Sbjct: 146 PSISAASILAKVTRDRMLVDLHERFPVYGFNVHVGYSTPKHLAALREHGPCEVHRRSFAP 205 Query: 204 LRN 206 +R Sbjct: 206 VRE 208 >gi|268683032|ref|ZP_06149894.1| ribonuclease HII [Neisseria gonorrhoeae PID332] gi|268623316|gb|EEZ55716.1| ribonuclease HII [Neisseria gonorrhoeae PID332] Length = 212 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 82/205 (40%), Positives = 112/205 (54%), Gaps = 3/205 (1%) Query: 6 IPERPHFELEAMVREKNMWPV--AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 +P F + N+ + AG+DE GRG L G V AA+IL G+ DSKK+ Sbjct: 1 MPSETIFRRHRTIPTGNIMHILTAGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKL 60 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S KKR+ L E I A+ +++++ + I NI AT+ A+ AV L P IDG Sbjct: 61 SEKKRDALAEMIKEQAVAWHVAASTPEEIASLNILHATMLAMKRAVYGLAARPEKIFIDG 120 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 IPE L A AV+KGDS + I+AAS++AK RD M ++ P YGFD H GY T Sbjct: 121 NRIPEHLGIPAEAVVKGDSKIIEISAASVLAKTARDAEMYALAQRRPQYGFDKHKGYGTK 180 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 +H + +K+ G HR F P+RNL Sbjct: 181 QHLEALKQYGVLPEHRRDFAPVRNL 205 >gi|119477116|ref|ZP_01617352.1| ribonuclease HII [marine gamma proteobacterium HTCC2143] gi|119449479|gb|EAW30717.1| ribonuclease HII [marine gamma proteobacterium HTCC2143] Length = 201 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 88/194 (45%), Positives = 119/194 (61%), Gaps = 2/194 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 +EA V + +AG+DEVGRG LAG VV AA+ILDP N G++DSKK++ KKRE L+ Sbjct: 1 MEAFVSNYSGILLAGVDEVGRGPLAGDVVAAAVILDPANPIRGLDDSKKLTEKKREALFP 60 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I A+ ++ AS + ID+ NI +A+L A+ AVE L + P L+DG +P Sbjct: 61 EIQEKALSWFVARASVREIDELNILQASLLAMKRAVEGLVLQPEHVLVDGNKLPR-WAYS 119 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A AV++GDS I AASI+AKV RDR M +YP YGF H GYPT H + G Sbjct: 120 AEAVVRGDSRVQVIGAASILAKVVRDREMVAFDDEYPGYGFAGHKGYPTRVHMTALDVLG 179 Query: 193 PSCIHRLTFRPLRN 206 + IHR +F P++ Sbjct: 180 VTPIHRSSFGPVKR 193 >gi|160945102|ref|ZP_02092328.1| hypothetical protein FAEPRAM212_02621 [Faecalibacterium prausnitzii M21/2] gi|158442833|gb|EDP19838.1| hypothetical protein FAEPRAM212_02621 [Faecalibacterium prausnitzii M21/2] gi|295105649|emb|CBL03193.1| RNase HII [Faecalibacterium prausnitzii SL3/3] Length = 215 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 86/193 (44%), Positives = 115/193 (59%), Gaps = 2/193 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + +A VR + AG+DE GRG L GPV VAA ILDP N +GINDSKK++ KKRE Sbjct: 12 PLYAFDAEVRSQ-YGCFAGVDEAGRGPLCGPVCVAACILDPENPVYGINDSKKLTEKKRE 70 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L+++I A+ I + ID+ NI AT+ + AVE L ++P L+DG P Sbjct: 71 ALFDEICEKALAYRIIFVGPEVIDRENILNATMGGMQQAVEELDIVPNLVLVDGNRTPAG 130 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L A V+KGD+ S SI AAS++AKV+RDR M K+YP Y H GYPT H ++I Sbjct: 131 LQIPAQPVVKGDATSASIGAASVLAKVSRDRYMLELDKQYPQYQLAKHKGYPTKLHYELI 190 Query: 189 KEKGPSCIHRLTF 201 + G +R +F Sbjct: 191 AQYGIQPFYRRSF 203 >gi|85860168|ref|YP_462370.1| ribonuclease HII [Syntrophus aciditrophicus SB] gi|97189377|sp|Q2LVU5|RNH2_SYNAS RecName: Full=Ribonuclease HII; Short=RNase HII gi|85723259|gb|ABC78202.1| ribonuclease HII [Syntrophus aciditrophicus SB] Length = 212 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 83/190 (43%), Positives = 115/190 (60%), Gaps = 2/190 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E E +AG+DE GRG LAGPVV AA+IL I DSKK+S KRE+LYE Sbjct: 7 FEREAYEDGYRVIAGVDEAGRGPLAGPVVAAAVILPHGYSHPEITDSKKLSAGKREKLYE 66 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I A+ I + ID+ NI +ATL A+ AV++L + P L+DG L Sbjct: 67 VIKRDALAIGVGVVESPVIDQVNILRATLRAMAEAVDDLSIRPDFLLVDGLH-RIFLNIS 125 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++KGD++S+SIA+ASIIAKV+RDR+M I H+++P Y F + GY T +H++ I+ G Sbjct: 126 QKTIVKGDTLSVSIASASIIAKVSRDRIMEIYHRQFPQYNFLKNKGYGTREHREAIQNFG 185 Query: 193 PSCIHRLTFR 202 IHR +F+ Sbjct: 186 FCKIHRRSFK 195 >gi|228992565|ref|ZP_04152492.1| Ribonuclease HII [Bacillus pseudomycoides DSM 12442] gi|228767199|gb|EEM15835.1| Ribonuclease HII [Bacillus pseudomycoides DSM 12442] Length = 272 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 94/195 (48%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 77 YEKALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPKDFYIPGLNDSKKLSEAKRERFYD 136 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID+ NI++AT A+ A+ NL P LID +P P Sbjct: 137 EIKEQAIAIGVGIVSPQVIDEINIYQATKRAMLDAIANLACTPEHLLIDAMKLPT--PIP 194 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ K+YP YGF+ H+GY T +H Q I+ G Sbjct: 195 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGKEYPAYGFEQHMGYGTKQHLQAIEMYG 254 Query: 193 PSCIHRLTFRPLRNL 207 HR TF P++++ Sbjct: 255 VLEEHRKTFAPIKDM 269 >gi|226325139|ref|ZP_03800657.1| hypothetical protein COPCOM_02931 [Coprococcus comes ATCC 27758] gi|225206487|gb|EEG88841.1| hypothetical protein COPCOM_02931 [Coprococcus comes ATCC 27758] Length = 253 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 87/178 (48%), Positives = 116/178 (65%), Gaps = 2/178 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + GIDEVGRG LAGPVV A+IL INDSKK+S KR+ELY++I A+ + + Sbjct: 72 FICGIDEVGRGPLAGPVVAGAVILPKECEILYINDSKKLSAAKRDELYDEIMDKAVAVGL 131 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 AS ID+ NI +AT +A+ A+ NL+V P L D +IPE + +IKGD+ S Sbjct: 132 GMASPARIDEINILQATYEAMRQAIGNLKVEPDLLLNDAVTIPEVV-IPQVPIIKGDAKS 190 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +SIAAASI+AKVTRDRLM K P YGF S+ GY +A+H + ++ GP+ IHR +F Sbjct: 191 VSIAAASIVAKVTRDRLMEEYDKVLPGYGFASNKGYGSAEHIKALQTLGPTPIHRRSF 248 >gi|332532224|ref|ZP_08408105.1| ribonuclease HII [Pseudoalteromonas haloplanktis ANT/505] gi|332038322|gb|EGI74767.1| ribonuclease HII [Pseudoalteromonas haloplanktis ANT/505] Length = 200 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 81/192 (42%), Positives = 113/192 (58%), Gaps = 2/192 (1%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 + N+ +AG+DEVGRG L G VV AA+ILDP G+ DSKK++ KKR+ L +I Sbjct: 2 QIDRPNVSLIAGVDEVGRGPLVGDVVTAAVILDPTKPIAGLADSKKLTDKKRQALAIEIK 61 Query: 77 SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 A+ + S ID+ NI AT+ A+ AVE L P IDG +P+ L A A Sbjct: 62 EKALCYAYGRCSPTEIDELNILHATMLAMSRAVEALSTQPEFVFIDGNRLPK-LTMPAQA 120 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V+KGDS+ I+AASI+AKV RD M ++P+YGF H GYPT H +++ G Sbjct: 121 VVKGDSLVAEISAASILAKVARDDEMLELDARHPEYGFAGHKGYPTKAHFAALEQYGAID 180 Query: 196 IHRLTFRPLRNL 207 HR +F+P++ + Sbjct: 181 EHRKSFKPVQRV 192 >gi|238787221|ref|ZP_04631020.1| Ribonuclease HII [Yersinia frederiksenii ATCC 33641] gi|238724483|gb|EEQ16124.1| Ribonuclease HII [Yersinia frederiksenii ATCC 33641] Length = 183 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 82/180 (45%), Positives = 110/180 (61%), Gaps = 2/180 (1%) Query: 29 IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSAS 87 +DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++IT A+ S+ A Sbjct: 1 MDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEITDKALSWSLGRAE 60 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 + ID NI AT+ A+ AV L ++P LIDG P+ L + AV+KGDS I+ Sbjct: 61 PEEIDHLNILHATMLAMQRAVAGLHIVPDYVLIDGNRCPK-LAMPSLAVVKGDSRVAEIS 119 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 AASI+AKVTRDR M +P+YGF H GYPT H + + G + HR +F P++ + Sbjct: 120 AASILAKVTRDREMTELDLHFPEYGFAQHKGYPTPVHLETLAAFGATEHHRRSFGPVKRV 179 >gi|307294539|ref|ZP_07574381.1| Ribonuclease H [Sphingobium chlorophenolicum L-1] gi|306879013|gb|EFN10231.1| Ribonuclease H [Sphingobium chlorophenolicum L-1] Length = 199 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 85/201 (42%), Positives = 119/201 (59%), Gaps = 5/201 (2%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 P F E + VAG+DE GRG LAGPVV AA+IL + P G+NDSK++S +R Sbjct: 1 MPDFLHE---LRHHPGLVAGVDEAGRGPLAGPVVAAAVILRREDCPEGLNDSKQLSAARR 57 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 L +I + A+ + AS + ID NI AT+ A+ AVE L L+DG P+ Sbjct: 58 AVLEGEIKARALCWGLGVASVEEIDSINILWATMLAMTRAVEALTHDCAHVLVDGNRCPQ 117 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + AV++GD+ LSIAAASI+AK RDR+M A +P YG++S+ GY + KH Sbjct: 118 -WRWASTAVVEGDAKCLSIAAASILAKEARDRMMVEAAAAHPHYGWESNKGYGSPKHLAA 176 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 ++E GP+ +HR +F P+ LS Sbjct: 177 LREHGPTPLHRRSFAPVAQLS 197 >gi|239993624|ref|ZP_04714148.1| ribonuclease HII [Alteromonas macleodii ATCC 27126] Length = 190 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 113/184 (61%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK+S KKR L ++I A+ +I Sbjct: 4 LIAGVDEVGRGPLVGDVVTAAVILDPENPIEGLTDSKKLSEKKRVALAQEIREKALYWNI 63 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 AS + IDK NI AT+ A+ AVE L V P +DG +P ++ AV+KGDS+ Sbjct: 64 GRASPEEIDKLNILHATMLAMIRAVEGLPVRPDFVRVDGNRVPA-WNFESEAVVKGDSLH 122 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASIIAKV RD M H+ YP Y F H GYPT H + I E G +R +F+P Sbjct: 123 AEISAASIIAKVERDNDMISLHEAYPQYNFAGHKGYPTKAHFEAIAEYGILDCYRKSFKP 182 Query: 204 LRNL 207 ++ L Sbjct: 183 VKAL 186 >gi|238751436|ref|ZP_04612928.1| Ribonuclease HII [Yersinia rohdei ATCC 43380] gi|238710303|gb|EEQ02529.1| Ribonuclease HII [Yersinia rohdei ATCC 43380] Length = 183 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 82/180 (45%), Positives = 111/180 (61%), Gaps = 2/180 (1%) Query: 29 IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSAS 87 +DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A+ S+ A Sbjct: 1 MDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEIIDKALSWSLGRAE 60 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 + ID NI AT+ A+ AV L ++P LIDG P+ L + AV+KGDS I+ Sbjct: 61 PEEIDHLNILHATMLAMQRAVAGLHIVPDYVLIDGNRCPQ-LAMPSLAVVKGDSRVAEIS 119 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 AASI+AKVTRDR M + +P+YGF H GYPTA H + + G + HR +F P++ + Sbjct: 120 AASILAKVTRDREMTELDRHFPEYGFAQHKGYPTAVHLEKLSTFGATEHHRRSFGPVKRV 179 >gi|255281039|ref|ZP_05345594.1| ribonuclease HII [Bryantella formatexigens DSM 14469] gi|255268487|gb|EET61692.1| ribonuclease HII [Bryantella formatexigens DSM 14469] Length = 252 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 87/197 (44%), Positives = 120/197 (60%), Gaps = 6/197 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + EK + GIDE GRG LAGPVV A+IL +NDSK++S K RE+L Sbjct: 60 LHYER-LYEK-YTYICGIDEAGRGPLAGPVVAGAVILPKGCTIRYLNDSKQLSEKMREQL 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y++I A+ + + AS ID+ NI +AT +A+ A+ L V P L D IP Sbjct: 118 YDEIMERAVAVGVGMASPARIDEINILQATYEAMRDAIGALSVRPDILLNDAVRIP-GTD 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + ++KGD+ SLSIAAAS+IAKVTRDRLM+ P+YGF +H GY +A H + +++ Sbjct: 177 IEQVPIVKGDAKSLSIAAASVIAKVTRDRLMKEYDALMPEYGFAAHKGYGSAAHIEALRQ 236 Query: 191 KGPSCIHRLTFRPLRNL 207 GPS IHR +F L+N+ Sbjct: 237 YGPSPIHRASF--LKNI 251 >gi|333029420|ref|ZP_08457481.1| Ribonuclease H [Bacteroides coprosuis DSM 18011] gi|332740017|gb|EGJ70499.1| Ribonuclease H [Bacteroides coprosuis DSM 18011] Length = 199 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 79/181 (43%), Positives = 111/181 (61%), Gaps = 1/181 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL + +NDSK++S KKR EL I + A+ + Sbjct: 13 AGCDEAGRGCLAGPVFAAAVILPSDFENNLLNDSKQLSEKKRYELRVIIENEALACGVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NI A+ A++ A++ L+V P LIDG + ++KGD+ LS Sbjct: 73 VSVEEIDKINILNASFLAMHRAIDCLKVRPEHLLIDGNRFNPYDGIKHTTIVKGDATFLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 IAAASI+AK RD M H KYP+Y ++ + GYPT KH++ I++ G + +HR TFR L+ Sbjct: 133 IAAASILAKTYRDDYMLAQHNKYPNYDWNHNKGYPTKKHREAIEKYGITPLHRHTFRLLK 192 Query: 206 N 206 + Sbjct: 193 D 193 >gi|217961257|ref|YP_002339825.1| ribonuclease HII [Bacillus cereus AH187] gi|229197947|ref|ZP_04324662.1| Ribonuclease [Bacillus cereus m1293] gi|226736815|sp|B7HLH0|RNH2_BACC7 RecName: Full=Ribonuclease HII; Short=RNase HII gi|217062970|gb|ACJ77220.1| ribonuclease HII [Bacillus cereus AH187] gi|228585526|gb|EEK43629.1| Ribonuclease [Bacillus cereus m1293] Length = 257 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 129/195 (66%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPKDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ AV NL P+ LID +P P Sbjct: 122 EIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 ILEEHRKSFAPIKDM 254 >gi|148557468|ref|YP_001265050.1| ribonuclease H [Sphingomonas wittichii RW1] gi|189043662|sp|A5VF46|RNH2_SPHWW RecName: Full=Ribonuclease HII; Short=RNase HII gi|148502658|gb|ABQ70912.1| Ribonuclease H [Sphingomonas wittichii RW1] Length = 202 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 84/200 (42%), Positives = 116/200 (58%), Gaps = 5/200 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F+LE + P+AG+DE GRG LAGPVV AA+ILD +P GI+DSKK+ + R Sbjct: 4 PSFDLEIA----HPLPLAGVDEAGRGPLAGPVVAAAVILDRGRVPAGIDDSKKLGAEARA 59 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 +L KI A + + A+ + ID+ NI A++ A+ AV L V P L+DG P Sbjct: 60 DLCGKIREVAHVGVGIATVEEIDEINILWASMLAMERAVAALGVEPAMVLVDGNRCPR-W 118 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + VI GD++ LSIAAASI+AK RDR+M +P YG+ + GY T H + Sbjct: 119 TRPSQWVIGGDALCLSIAAASIVAKEERDRMMADYDVHHPGYGWAKNKGYGTPAHLDALA 178 Query: 190 EKGPSCIHRLTFRPLRNLSV 209 GPS +HR +F P+ S+ Sbjct: 179 RLGPSPLHRRSFAPVAQFSL 198 >gi|94497432|ref|ZP_01304002.1| Ribonuclease H [Sphingomonas sp. SKA58] gi|94423063|gb|EAT08094.1| Ribonuclease H [Sphingomonas sp. SKA58] Length = 199 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 86/202 (42%), Positives = 120/202 (59%), Gaps = 5/202 (2%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 P F E + + VAG+DE GRG LAGPVV AA+IL ++ P G+NDSK++S KKR Sbjct: 1 MPDFSHERI---HHPGLVAGVDEAGRGPLAGPVVAAAVILRADDCPDGLNDSKQLSAKKR 57 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 L ++ + A+ I AS ID NI AT+ A+ AVE L L+DG P+ Sbjct: 58 AALEAQVKARALCWGIGVASVAEIDDLNILWATMLAMTRAVEALSADCAHVLVDGNRCPQ 117 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + AV+ GD+ LSIAAASI+AK RDR+M A +P YG++S+ GY +A H Sbjct: 118 -WRWASTAVVDGDAKCLSIAAASILAKEERDRMMIAAAADHPHYGWESNKGYGSAHHLAA 176 Query: 188 IKEKGPSCIHRLTFRPLRNLSV 209 ++E GP+ +HR +F P+ L + Sbjct: 177 LREHGPTPLHRRSFSPVAQLLL 198 >gi|52141651|ref|YP_085178.1| ribonuclease HII [Bacillus cereus E33L] gi|81686573|sp|Q636I9|RNH2_BACCZ RecName: Full=Ribonuclease HII; Short=RNase HII gi|51975120|gb|AAU16670.1| ribonuclease HII (RNase HII) [Bacillus cereus E33L] Length = 257 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 94/195 (48%), Positives = 128/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KRE Y+ Sbjct: 62 YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ AV NL P LID +P P Sbjct: 122 EIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPEYLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEVHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|228998613|ref|ZP_04158200.1| Ribonuclease HII [Bacillus mycoides Rock3-17] gi|228761081|gb|EEM10040.1| Ribonuclease HII [Bacillus mycoides Rock3-17] Length = 272 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 94/195 (48%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 77 YEKALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 136 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID+ NI++AT A+ A+ NL P LID +P P Sbjct: 137 EIKEQAIAIGVGIVSPQVIDEINIYQATKRAMLDAIANLACTPEHLLIDAMKLPT--PIP 194 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ K+YP YGF+ H+GY T +H Q I+ G Sbjct: 195 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGKEYPAYGFEQHMGYGTKQHLQAIEMYG 254 Query: 193 PSCIHRLTFRPLRNL 207 HR TF P++++ Sbjct: 255 VLEEHRKTFAPIKDM 269 >gi|225630956|ref|YP_002727747.1| ribonuclease HII [Wolbachia sp. wRi] gi|254808008|sp|C0R4W4|RNH2_WOLWR RecName: Full=Ribonuclease HII; Short=RNase HII gi|225592937|gb|ACN95956.1| ribonuclease HII [Wolbachia sp. wRi] Length = 198 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 86/198 (43%), Positives = 121/198 (61%), Gaps = 6/198 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKR 68 P F LE + +AG+DEVGRG LAGPV+ AA++ D N I GINDSKK++ + R Sbjct: 4 PDFTLENKLS----GVIAGVDEVGRGPLAGPVISAAVVFIDRNTIIDGINDSKKLTPQCR 59 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + LYEKI S A I AS + I+ +NI +AT ++ A+ +L + L+DG PE Sbjct: 60 QVLYEKIISVAKFGIGMASVEEINSYNILQATKLSMKRALIDLDLELDYVLVDGNQPPE- 118 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + Q +++ GD++S SIAAASI+AKVTRDRLM+ H K+P+Y + + GY T +H I Sbjct: 119 VKWQVKSIVNGDNLSTSIAAASIVAKVTRDRLMQELHNKHPEYNWYKNKGYGTKEHLNAI 178 Query: 189 KEKGPSCIHRLTFRPLRN 206 G + HR F P+ Sbjct: 179 GLYGITEHHRRNFAPISR 196 >gi|292492827|ref|YP_003528266.1| ribonuclease H [Nitrosococcus halophilus Nc4] gi|291581422|gb|ADE15879.1| Ribonuclease H [Nitrosococcus halophilus Nc4] Length = 200 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 81/193 (41%), Positives = 117/193 (60%), Gaps = 2/193 (1%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 ++ + +AG+DEVGRG LAGPVV AA+ILDP + G+ DSK+++ RE L I Sbjct: 6 TLQREVQGWIAGVDEVGRGPLAGPVVAAAVILDPGHPIAGVKDSKQLTPLARERLAALIQ 65 Query: 77 SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 + A+ ++ A + I++ NI A+L A+ AV L P L+DG+ P C A Sbjct: 66 AQAVAWALGRAEVEEIEQLNIFWASLLAMERAVAALSEAPSLVLVDGKHCPPA-ACPVRA 124 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V+KGD ++IAAASI+AKV RD M K+YP YGF +H GYPT H +++ GP Sbjct: 125 VVKGDQKVMAIAAASIVAKVARDAEMVALEKRYPGYGFGTHKGYPTRAHLAALEKLGPCP 184 Query: 196 IHRLTFRPLRNLS 208 IHR +FR ++ ++ Sbjct: 185 IHRRSFRAVKEIA 197 >gi|255010102|ref|ZP_05282228.1| ribonuclease HII [Bacteroides fragilis 3_1_12] gi|313147897|ref|ZP_07810090.1| ribonuclease HII [Bacteroides fragilis 3_1_12] gi|313136664|gb|EFR54024.1| ribonuclease HII [Bacteroides fragilis 3_1_12] Length = 201 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 79/179 (44%), Positives = 105/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK++S K+R L E I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFENELLNDSKQLSEKQRYALREVIEREAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NI A+ A++ AV+ L+ P+ LIDG + V+KGD LS Sbjct: 73 VSPEEIDKINILNASFLAMHRAVDGLKTRPQHLLIDGNRFRKYPDIPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H+++P YG+D + GYPT KH+ I E G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNGLHQEFPCYGWDHNKGYPTKKHRAAIAENGVTPYHRMTFNLL 191 >gi|225874361|ref|YP_002755820.1| ribonuclease HII [Acidobacterium capsulatum ATCC 51196] gi|225794400|gb|ACO34490.1| ribonuclease HII [Acidobacterium capsulatum ATCC 51196] Length = 236 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 86/193 (44%), Positives = 121/193 (62%), Gaps = 3/193 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E R++ +AG+DEVGRGAL GPVV AA+IL G+ DSK++ RE L Sbjct: 28 RYERQARQQGATAIAGVDEVGRGALFGPVVAAAVILPSRIRLEGLRDSKQLRVSDRERLA 87 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++ + AI ++I+ + ID+ NI++AT A+ AVE LQ P LID I D PC Sbjct: 88 TEVHACAIAVAIAEVDVETIDRINIYQATRLAMLRAVELLQPEPDHLLIDAMRI--DHPC 145 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++I GDS+SLSIAAAS++AKV RDRL+ H YP+YG D+H GY T +H+ + + Sbjct: 146 AQTSIIYGDSLSLSIAAASVVAKVYRDRLVCELHALYPEYGLDAHKGYGTPRHKAALLQY 205 Query: 192 GPSCIHRLTFRPL 204 GP+ +HR +F P+ Sbjct: 206 GPTPLHRKSFAPV 218 >gi|262369617|ref|ZP_06062945.1| ribonuclease HII [Acinetobacter johnsonii SH046] gi|262315685|gb|EEY96724.1| ribonuclease HII [Acinetobacter johnsonii SH046] Length = 192 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 82/183 (44%), Positives = 113/183 (61%), Gaps = 1/183 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 +AG DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A+ + Sbjct: 3 IAGADEAGRGPLVGSVVAAAVILDPNNPIQGLNDSKKLTEKKREKLFVEIQEKALAWAIA 62 Query: 86 ASHQYI-DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + D+ NI +A+L A+ AVE L + P L+DG IP+ L A++ GD++ Sbjct: 63 EASAAEIDEINILQASLLAMRRAVEQLTIQPEHVLVDGNKIPQGLSMSCEAIVGGDALHA 122 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +KYP +GF H GYPT H + I E G HR +F P+ Sbjct: 123 EISAASILAKVTRDHQMIEMDRKYPQFGFAKHKGYPTKAHFEAIAEHGVIDEHRRSFGPV 182 Query: 205 RNL 207 + + Sbjct: 183 KKV 185 >gi|229086390|ref|ZP_04218566.1| Ribonuclease [Bacillus cereus Rock3-44] gi|228696906|gb|EEL49715.1| Ribonuclease [Bacillus cereus Rock3-44] Length = 255 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 91/195 (46%), Positives = 128/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YEKALREKGLAYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ A+ NL P LID +P P Sbjct: 122 EINAKAIAIGVGIISPQVIDEINIYQATKRAMLDAIANLSCTPEHLLIDAMKLPS--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +++KGD+ S+SI+AASIIAKVTRD +M+ K++P+YGF+ H+GY T +H Q I+ G Sbjct: 180 QTSIVKGDTKSISISAASIIAKVTRDCMMKELGKEHPEYGFEQHMGYGTKQHLQAIETYG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR TF P++++ Sbjct: 240 VLEEHRKTFAPIKDM 254 >gi|312796258|ref|YP_004029180.1| ribonuclease HII [Burkholderia rhizoxinica HKI 454] gi|312168033|emb|CBW75036.1| Ribonuclease HII (EC 3.1.26.4) [Burkholderia rhizoxinica HKI 454] Length = 232 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 84/184 (45%), Positives = 118/184 (64%), Gaps = 3/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-IS 82 V G+DE GRG LAGPVV AA+ILDP G++DSK +S RE+L+++I ++ Sbjct: 30 LVCGVDEAGRGPLAGPVVAAAVILDPAAPRIRGLDDSKALSPATREKLFDRIVERSLAYC 89 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 ++SAS + ID NI AT+ A+ AV+ L + P +DG P L ++ AVI GD++ Sbjct: 90 VASASVEEIDTLNILHATMLAMQRAVQGLALTPALVKVDGNRCPV-LSVRSEAVIGGDAL 148 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SI+AASI+AKVTRDR+M H ++P YGFD+HVGY T +H ++ GP HR +F Sbjct: 149 VPSISAASILAKVTRDRMMHALHDEFPHYGFDAHVGYGTPRHLAALRIHGPCVHHRRSFA 208 Query: 203 PLRN 206 P+R Sbjct: 209 PVRK 212 >gi|302344951|ref|YP_003813304.1| ribonuclease HII [Prevotella melaninogenica ATCC 25845] gi|302149166|gb|ADK95428.1| ribonuclease HII [Prevotella melaninogenica ATCC 25845] Length = 200 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 108/179 (60%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL P+ +NDSKK++ KKR L E+I AI ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPPDYQNELLNDSKKLTAKKRYALREEIERDAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + IDK NI A+ A++ A++ L+V P + ++DG + ++KGD LS Sbjct: 73 VTPEEIDKINILNASFLAMHRALDQLKVRPEAVIVDGNRFKPYQDLPSTTIVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M ++YP Y + S++GYPT KH+Q I+E G + HR ++ L Sbjct: 133 IAAASILAKTYRDDYMLSLAEEYPQYDWQSNMGYPTKKHRQAIREHGITPYHRKSYNLL 191 >gi|124007381|ref|ZP_01692088.1| ribonuclease HII [Microscilla marina ATCC 23134] gi|123987214|gb|EAY26954.1| ribonuclease HII [Microscilla marina ATCC 23134] Length = 195 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 79/181 (43%), Positives = 116/181 (64%), Gaps = 1/181 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DEVGRG LAGPVV AA+IL PN + DSKK++ K RE+L + I AI +++ Sbjct: 13 AGVDEVGRGCLAGPVVAAAVILPPNYKNELLMDSKKLNKKTREKLRKTIEEEAISWAVAE 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ASH ID+ NI A+ A++ A+E L+ P LIDG ++KGD+ LS Sbjct: 73 ASHTEIDEINILNASFLAMHRAIEQLEPEPELLLIDGNRFNPYKFVAYQCIVKGDNKFLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 IAAASI+AK RD LM ++P+Y ++++VGYPT KH+ I++ G + HR++F+ ++ Sbjct: 133 IAAASILAKTYRDDLMEKLAVEHPEYDWENNVGYPTKKHRAAIEQHGATPWHRMSFKLIK 192 Query: 206 N 206 + Sbjct: 193 D 193 >gi|228928885|ref|ZP_04091917.1| Ribonuclease [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229092879|ref|ZP_04224013.1| Ribonuclease [Bacillus cereus Rock3-42] gi|228690501|gb|EEL44284.1| Ribonuclease [Bacillus cereus Rock3-42] gi|228830692|gb|EEM76297.1| Ribonuclease [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 257 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 128/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KRE Y+ Sbjct: 62 YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ A+ NL P LID +P P Sbjct: 122 EIKAKAIAIGVGIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|118594900|ref|ZP_01552247.1| ribonuclease HII [Methylophilales bacterium HTCC2181] gi|118440678|gb|EAV47305.1| ribonuclease HII [Methylophilales bacterium HTCC2181] Length = 188 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 84/188 (44%), Positives = 118/188 (62%), Gaps = 1/188 (0%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81 M + G+DE GRG LAGPV AA+ILDP+ G+ DSKK+S K+ +Y I A + Sbjct: 1 MIMICGVDEAGRGPLAGPVFAAAVILDPSRPIPGLKDSKKLSPKQLLSVYLDIMKCAWEV 60 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S ++A+ Q ID+ NI +A+L A+ A+ L IP LIDG+ P+ + AV+KGD+ Sbjct: 61 SSATATPQEIDQINILQASLLAMKRAIYQLSNIPDRILIDGQHCPDIQSMEMKAVVKGDA 120 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I+AASIIAKV RD+ M ++P+Y F H GYPT +H ++I+E G S +HR TF Sbjct: 121 KHQEISAASIIAKVERDKYMLELDHQFPEYNFKQHKGYPTKEHIRLIREFGVSPVHRKTF 180 Query: 202 RPLRNLSV 209 RP+ L + Sbjct: 181 RPVSELLI 188 >gi|97182194|sp|Q5PBG2|RNH2_ANAMM RecName: Full=Ribonuclease HII; Short=RNase HII Length = 243 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 91/205 (44%), Positives = 125/205 (60%), Gaps = 2/205 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKI 63 + P F +E +R + + G+DEVG GA+AGPVV AA+ L + I DSK + Sbjct: 5 MNRMPSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKAL 64 Query: 64 SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 S KKREEL+ KIT+ A + A + I++HNI A+ ++ A++NL V L+DG Sbjct: 65 SSKKREELFCKITAHAKYGVGFARVREIEQHNILVASHISMKRALQNLGVKADLVLVDGS 124 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 P LP ++KGDSIS SIAAASIIAKVTRDR MR H++YP+Y ++ + GY T Sbjct: 125 RAPAGLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKA 184 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLS 208 H Q +K G + HR TF P++ LS Sbjct: 185 HMQSLKLYGKTAQHRSTFAPVKQLS 209 >gi|194099971|ref|YP_002003110.1| ribonuclease HII [Neisseria gonorrhoeae NCCP11945] gi|254494667|ref|ZP_05107838.1| ribonuclease HII [Neisseria gonorrhoeae 1291] gi|268593829|ref|ZP_06127996.1| ribonuclease HII [Neisseria gonorrhoeae 35/02] gi|268597728|ref|ZP_06131895.1| ribonuclease HII [Neisseria gonorrhoeae FA19] gi|268599975|ref|ZP_06134142.1| ribonuclease HII [Neisseria gonorrhoeae MS11] gi|268602313|ref|ZP_06136480.1| ribonuclease HII [Neisseria gonorrhoeae PID18] gi|268604575|ref|ZP_06138742.1| ribonuclease HII [Neisseria gonorrhoeae PID1] gi|268683300|ref|ZP_06150162.1| ribonuclease HII [Neisseria gonorrhoeae SK-92-679] gi|268687461|ref|ZP_06154323.1| ribonuclease HII [Neisseria gonorrhoeae SK-93-1035] gi|291042833|ref|ZP_06568574.1| ribonuclease HII [Neisseria gonorrhoeae DGI2] gi|193935261|gb|ACF31085.1| RnhB [Neisseria gonorrhoeae NCCP11945] gi|226513707|gb|EEH63052.1| ribonuclease HII [Neisseria gonorrhoeae 1291] gi|268547218|gb|EEZ42636.1| ribonuclease HII [Neisseria gonorrhoeae 35/02] gi|268551516|gb|EEZ46535.1| ribonuclease HII [Neisseria gonorrhoeae FA19] gi|268584106|gb|EEZ48782.1| ribonuclease HII [Neisseria gonorrhoeae MS11] gi|268586444|gb|EEZ51120.1| ribonuclease HII [Neisseria gonorrhoeae PID18] gi|268588706|gb|EEZ53382.1| ribonuclease HII [Neisseria gonorrhoeae PID1] gi|268623584|gb|EEZ55984.1| ribonuclease HII [Neisseria gonorrhoeae SK-92-679] gi|268627745|gb|EEZ60145.1| ribonuclease HII [Neisseria gonorrhoeae SK-93-1035] gi|291013267|gb|EFE05233.1| ribonuclease HII [Neisseria gonorrhoeae DGI2] gi|317165422|gb|ADV08963.1| ribonuclease HII [Neisseria gonorrhoeae TCDC-NG08107] Length = 212 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 82/205 (40%), Positives = 112/205 (54%), Gaps = 3/205 (1%) Query: 6 IPERPHFELEAMVREKNMWPV--AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 +P F + N+ + AG+DE GRG L G V AA+IL G+ DSKK+ Sbjct: 1 MPSETIFRRHRTIPTGNIMHILTAGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKL 60 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S KKR+ L E I A+ +++++ + I NI AT+ A+ AV L P IDG Sbjct: 61 SEKKRDALAEMIKEQAVAWHVAASTPEEIASLNILHATMLAMKRAVYGLAARPEKIFIDG 120 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 IPE L A AV+KGDS + I+AAS++AK RD M ++ P YGFD H GY T Sbjct: 121 NRIPEHLGIPAEAVVKGDSKIIEISAASVLAKTARDAEMYALAQRRPQYGFDKHKGYGTK 180 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 +H + +K+ G HR F P+RNL Sbjct: 181 QHLEALKQYGVLPEHRRDFAPVRNL 205 >gi|42782929|ref|NP_980176.1| ribonuclease HII [Bacillus cereus ATCC 10987] gi|222097282|ref|YP_002531339.1| ribonuclease hii [Bacillus cereus Q1] gi|73917595|sp|Q732N3|RNH2_BACC1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807967|sp|B9IVC6|RNH2_BACCQ RecName: Full=Ribonuclease HII; Short=RNase HII gi|42738856|gb|AAS42784.1| ribonuclease HII [Bacillus cereus ATCC 10987] gi|221241340|gb|ACM14050.1| ribonuclease HII [Bacillus cereus Q1] Length = 257 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 129/195 (66%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ AV NL P+ LID +P P Sbjct: 122 EIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 ILEEHRKSFAPIKDM 254 >gi|47570338|ref|ZP_00240983.1| ribonuclease HII [Bacillus cereus G9241] gi|47553003|gb|EAL11409.1| ribonuclease HII [Bacillus cereus G9241] gi|324327734|gb|ADY22994.1| ribonuclease HII [Bacillus thuringiensis serovar finitimus YBT-020] Length = 257 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 129/195 (66%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ AV NL P+ LID +P P Sbjct: 122 EIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 ILEEHRKSFAPIKDM 254 >gi|323489566|ref|ZP_08094793.1| ribonuclease HII [Planococcus donghaensis MPA1U2] gi|323396697|gb|EGA89516.1| ribonuclease HII [Planococcus donghaensis MPA1U2] Length = 259 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 85/198 (42%), Positives = 118/198 (59%), Gaps = 4/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREE 70 + R++++ VAGIDE GRG LAGPVV AA+IL + G++DSK++S KR+E Sbjct: 57 LAFDDSFRKESVDLVAGIDEAGRGPLAGPVVTAAVILPEDCSSLIGLDDSKQLSKAKRDE 116 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L I AI ++ S + ID+ NI++AT ++ A L P L D + +L Sbjct: 117 LAITIKKFAISYAVHVQSPEEIDRLNIYQATKSSMTEAARALTPAPDIVLADAMML--EL 174 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P ++IKGD+ SLSIAAASI+AK RD LM +YP YGF+ H GY T +H ++ Sbjct: 175 PMTCESIIKGDAKSLSIAAASILAKTGRDALMTEYAVQYPQYGFEKHAGYGTKEHVAALQ 234 Query: 190 EKGPSCIHRLTFRPLRNL 207 E GP IHR TF P++ L Sbjct: 235 EYGPCEIHRKTFEPIKTL 252 >gi|223044238|ref|ZP_03614275.1| ribonuclease HII (RNase HII) [Staphylococcus capitis SK14] gi|222442388|gb|EEE48496.1| ribonuclease HII (RNase HII) [Staphylococcus capitis SK14] Length = 256 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 82/198 (41%), Positives = 120/198 (60%), Gaps = 4/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 H+E E ++ N + GIDEVGRG LAGPVV A+IL+ + G+NDSKK+ K+R Sbjct: 60 HYENE-ILNHDNEALICGIDEVGRGPLAGPVVACAVILNKGHHYLGLNDSKKVPAKQRLI 118 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L E++ ++ + A+ Q ID NI+KAT A+ A+ L + P LID + D+ Sbjct: 119 LNEELKNNVTSYAYGIATPQEIDDLNIYKATQVAMQRAINQLSIQPTHLLIDAMKLDNDI 178 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P ++IKGD+ S+SIAAASI+AK RD M+ YP+YGF+ +VGY T +H + I Sbjct: 179 P--QISIIKGDAKSVSIAAASIMAKEYRDNYMKELANDYPNYGFEKNVGYGTKQHLEAID 236 Query: 190 EKGPSCIHRLTFRPLRNL 207 G HR +F P++++ Sbjct: 237 TFGVINEHRKSFEPIKSM 254 >gi|329888215|ref|ZP_08266813.1| ribonuclease HII family protein [Brevundimonas diminuta ATCC 11568] gi|328846771|gb|EGF96333.1| ribonuclease HII family protein [Brevundimonas diminuta ATCC 11568] Length = 199 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 90/195 (46%), Positives = 115/195 (58%), Gaps = 2/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 LE R V G+DE GRG AGPV AA+IL+P+++P GI+DSK ++ K+R L Sbjct: 2 LELEARATWNGHVCGVDEAGRGPWAGPVSAAAVILNPDDLPPGIDDSKALTEKRRAALEP 61 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I S A+ + AS + ID+ NI AT A+ AVE L P AL+DG LPC Sbjct: 62 LIKSRALAWGVGFASVEEIDELNILHATGLAMRRAVEALAHAPVHALVDGN-YRFKLPCA 120 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 V+KGDS SLSIAAASI+AK RDRLM YP YGF SH GY HQ+ ++ G Sbjct: 121 VTPVVKGDSRSLSIAAASILAKTARDRLMIEMDATYPGYGFASHKGYNAPIHQKALQTLG 180 Query: 193 PSCIHRLTFRPLRNL 207 P HR ++ P++ L Sbjct: 181 PCPEHRRSWAPIKAL 195 >gi|114567000|ref|YP_754154.1| ribonuclease H [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318000|sp|Q0AWX1|RNH2_SYNWW RecName: Full=Ribonuclease HII; Short=RNase HII gi|114337935|gb|ABI68783.1| RNase HII [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 255 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 85/198 (42%), Positives = 120/198 (60%), Gaps = 2/198 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E +AGIDE GRG +AGPV+ AA+IL + GINDSKK++ KR +L Sbjct: 47 RYEYEAYNNGFRYIAGIDEAGRGPIAGPVMAAAVILSRDFFCPGINDSKKLTALKRSKLA 106 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I AI S+++ Y+DK NI AT +A+ AV+NL P LID +P D+ Sbjct: 107 AEIKKQAISWSVAAVFPSYLDKVNILNATREAMLLAVKNLSPRPEFLLIDAVQLP-DIDI 165 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + + +IKGDS+S+SIAAASI+AKV RDR+M YP YGF H GY T +H Q + Sbjct: 166 KQYPLIKGDSLSVSIAAASILAKVERDRVMEAFDSLYPGYGFSRHKGYATREHLQSLLRL 225 Query: 192 GPSCIHRLTFRPLRNLSV 209 G +HR++F P++++ + Sbjct: 226 GTCALHRVSFEPVKSMVL 243 >gi|121634067|ref|YP_974312.1| ribonuclease HII [Neisseria meningitidis FAM18] gi|166226632|sp|A1KRM4|RNH2_NEIMF RecName: Full=Ribonuclease HII; Short=RNase HII gi|120865773|emb|CAM09502.1| ribonuclease HII [Neisseria meningitidis FAM18] Length = 194 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 80/182 (43%), Positives = 108/182 (59%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I + A+ +++ Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPEIFDLPGLTDSKKLSEKKRDALAEMIKNQAVAWHVAA 65 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 AGPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +++ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALEKYGVLPEHRRDFAPVR 185 Query: 206 NL 207 NL Sbjct: 186 NL 187 >gi|320120511|gb|EFE28779.2| ribonuclease HII [Filifactor alocis ATCC 35896] Length = 256 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 79/188 (42%), Positives = 114/188 (60%), Gaps = 1/188 (0%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E K + V G+DE GRG LAGPVV A +I+ +++ G+NDSKKI REELY+K Sbjct: 66 EQDWNSKGILLVGGVDEAGRGPLAGPVVAACVIMKSDSLILGMNDSKKIKETVREELYDK 125 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 + +I I AS + ID++NI +AT A+ A++ ++ +P L+DG + + Sbjct: 126 VIQDSISFGIGIASSEEIDRYNILQATFLAMKRAMQEMKQVPDLVLVDGNQEISNCSIRQ 185 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 VI GDSI SIA ASI+AKV RDR+MR + YP++ F S+ GY T+ H ++ G Sbjct: 186 ETVIHGDSICYSIACASILAKVYRDRIMRDYDRIYPEFDFLSNKGYGTSHHYDALRTYGV 245 Query: 194 SCIHRLTF 201 + IHR +F Sbjct: 246 TPIHRKSF 253 >gi|315150451|gb|EFT94467.1| ribonuclease HII [Enterococcus faecalis TX0012] Length = 255 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 91/196 (46%), Positives = 126/196 (64%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E +K +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KKRE LY Sbjct: 61 QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ I + A ID+ NI++AT A+ A+++L P LID + D+P Sbjct: 121 NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFTPDYLLIDAMQL--DVPQ 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM + YP YGF ++ GY T +H +++ Sbjct: 179 PQESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKY 238 Query: 192 GPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 239 GVTPIHRRTFAPIKDM 254 >gi|302386482|ref|YP_003822304.1| Ribonuclease H [Clostridium saccharolyticum WM1] gi|302197110|gb|ADL04681.1| Ribonuclease H [Clostridium saccharolyticum WM1] Length = 213 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 85/195 (43%), Positives = 116/195 (59%), Gaps = 6/195 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E ++ V GIDE GRG LAGPVV A+IL + +NDSKK+S K+RE L+E Sbjct: 22 YERQYEDQ--VLVCGIDEAGRGPLAGPVVAGAVILPRDCEILFLNDSKKLSEKRREALFE 79 Query: 74 KITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I A ++ ID+ NI +AT +A+ AV L++ P L D +IP + Sbjct: 80 EIMEKASAFAVGVVGADRIDEINILQATYEAMRLAVAKLEIEPNVFLNDAVTIP-GIAAS 138 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +IKGD S+SIAAASI+AKVTRD +M K +P+YGF H GY TA H + +KE G Sbjct: 139 QVPIIKGDGKSVSIAAASIMAKVTRDHMMEEYDKLFPEYGFSRHKGYGTAVHMKALKEFG 198 Query: 193 PSCIHRLTFRPLRNL 207 P IHR +F ++N+ Sbjct: 199 PCPIHRRSF--IKNI 211 >gi|255004020|ref|ZP_05278821.1| ribonuclease HII (rnhB) [Anaplasma marginale str. Virginia] Length = 239 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 91/205 (44%), Positives = 125/205 (60%), Gaps = 2/205 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKI 63 + P F +E +R + + G+DEVG GA+AGPVV AA+ L + I DSK + Sbjct: 1 MNRMPSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKAL 60 Query: 64 SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 S KKREEL+ KIT+ A + A + I++HNI A+ ++ A++NL V L+DG Sbjct: 61 SSKKREELFCKITAHARYGVGFARVREIEQHNILVASHISMKRALQNLGVKADLVLVDGS 120 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 P LP ++KGDSIS SIAAASIIAKVTRDR MR H++YP+Y ++ + GY T Sbjct: 121 RAPAGLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKA 180 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLS 208 H Q +K G + HR TF P++ LS Sbjct: 181 HMQSLKLYGKTAQHRSTFAPVKQLS 205 >gi|229006113|ref|ZP_04163801.1| Ribonuclease HII [Bacillus mycoides Rock1-4] gi|228755189|gb|EEM04546.1| Ribonuclease HII [Bacillus mycoides Rock1-4] Length = 257 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 94/195 (48%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YEKALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID+ NI++AT A+ A+ NL P LID +P P Sbjct: 122 EIKEQAIAIGVGIVSPQVIDEINIYQATKRAMLDAIANLACTPEHLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ K+YP YGF+ H+GY T +H Q I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGKEYPAYGFEQHMGYGTKQHLQAIEMYG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR TF P++++ Sbjct: 240 VLEEHRKTFAPIKDM 254 >gi|220915421|ref|YP_002490725.1| Ribonuclease H [Anaeromyxobacter dehalogenans 2CP-1] gi|219953275|gb|ACL63659.1| Ribonuclease H [Anaeromyxobacter dehalogenans 2CP-1] Length = 283 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 81/195 (41%), Positives = 116/195 (59%), Gaps = 2/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 EA + E+ + VAG+DE G LAGPVV A +L + P GI+DSK++ +RE L Sbjct: 66 LRYEAELWERGLVRVAGVDEAGMAPLAGPVVAGACVLPLDYRPRGIDDSKQLDRAERERL 125 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 E I +A+ +++ A + ID+ NI+ A + A+ AV+ L P L+D R +P DLP Sbjct: 126 AEDIKRNAVCWAVARADVEEIDRLNIYWAGMLALRRAVDGLSARPEHLLVDARKLP-DLP 184 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++ GD++SL+IAAASI+AK RD LM +P YGF H GYPTA+H + + Sbjct: 185 FPQTPIVHGDALSLTIAAASILAKTARDALMAELDLVHPGYGFARHKGYPTAEHFEALGR 244 Query: 191 KGPSCIHRLTFRPLR 205 G IHR +F P+R Sbjct: 245 LGACPIHRRSFTPVR 259 >gi|238763964|ref|ZP_04624920.1| Ribonuclease HII [Yersinia kristensenii ATCC 33638] gi|238697781|gb|EEP90542.1| Ribonuclease HII [Yersinia kristensenii ATCC 33638] Length = 183 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 82/180 (45%), Positives = 109/180 (60%), Gaps = 2/180 (1%) Query: 29 IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSAS 87 +DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A+ S+ A Sbjct: 1 MDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEIIDKALSWSLGRAE 60 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 + ID NI AT+ A+ AV L + P LIDG P+ L + AV+KGDS I+ Sbjct: 61 PEEIDHLNILHATMLAMQRAVAGLHIAPDYVLIDGNRCPK-LAMPSLAVVKGDSRVAEIS 119 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 AASI+AKVTRDR M ++P YGF H GYPTA H + + G + HR +F P++ + Sbjct: 120 AASILAKVTRDREMTELDLQFPGYGFAQHKGYPTAVHLEKLAALGATEHHRRSFGPVKRV 179 >gi|254247897|ref|ZP_04941218.1| Ribonuclease HII [Burkholderia cenocepacia PC184] gi|124872673|gb|EAY64389.1| Ribonuclease HII [Burkholderia cenocepacia PC184] Length = 214 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 89/182 (48%), Positives = 120/182 (65%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LY+ I + + + Sbjct: 27 IVCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLDDSKVLSAKKRDALYDLIVTRSHAYCV 86 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS ID NI AT+ A+ AVE L V+P A IDG P L +A A++ GD++ Sbjct: 87 ASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LSVRAEAIVSGDALV 145 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+++P YGF+ H GY TAKH ++E GP HR +F P Sbjct: 146 PSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAHRRSFAP 205 Query: 204 LR 205 +R Sbjct: 206 VR 207 >gi|288801638|ref|ZP_06407080.1| ribonuclease HII [Prevotella melaninogenica D18] gi|288335680|gb|EFC74113.1| ribonuclease HII [Prevotella melaninogenica D18] Length = 200 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 106/179 (59%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL P+ +NDSKK++ KKR L E+I AI ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPPDYQNELLNDSKKLTAKKRYALREEIERDAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + IDK NI A+ A++ A++ L V P + ++DG + ++KGD LS Sbjct: 73 VTPEEIDKINILNASFLAMHRALDQLSVRPEAVIVDGNRFKPYQDLPSTTIVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M ++YP Y + S++GYPT KH+Q I E G + HR ++ L Sbjct: 133 IAAASILAKTYRDDYMLSLAEEYPQYDWQSNMGYPTKKHRQAILEYGITPYHRKSYNLL 191 >gi|257439821|ref|ZP_05615576.1| ribonuclease HII [Faecalibacterium prausnitzii A2-165] gi|257197730|gb|EEU96014.1| ribonuclease HII [Faecalibacterium prausnitzii A2-165] Length = 214 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 86/193 (44%), Positives = 117/193 (60%), Gaps = 2/193 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P +E +A +R + AG+DE GRG L GPVVVAA ILDP +GINDSKK++ KKRE Sbjct: 12 PLYEYDAAIRAQ-YGFFAGVDEAGRGPLCGPVVVAACILDPEKPVYGINDSKKLTEKKRE 70 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L+++I A+ I + ID+ NI AT+ + A E L ++P L+DG +P Sbjct: 71 ALFDEICDKALAYKIVFVGPEIIDRDNILNATMSGMKQAAEGLDIVPNLVLVDGNRVPAA 130 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L A V+KGD+ S SI AASI+AKV+RDR M K+YP Y H GYPT H ++I Sbjct: 131 LEIPAQPVVKGDATSASIGAASILAKVSRDRYMMELDKQYPQYQLAKHKGYPTKLHYELI 190 Query: 189 KEKGPSCIHRLTF 201 ++ G +R +F Sbjct: 191 EQYGIQPFYRRSF 203 >gi|196228537|ref|ZP_03127404.1| Ribonuclease H [Chthoniobacter flavus Ellin428] gi|196227940|gb|EDY22443.1| Ribonuclease H [Chthoniobacter flavus Ellin428] Length = 202 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 82/199 (41%), Positives = 116/199 (58%), Gaps = 3/199 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E +R VAGIDEVGRG LAGPVV AA+IL +NDSKK+S ++RE++Y Sbjct: 2 RHERKLRADGCVLVAGIDEVGRGPLAGPVVAAAVILPEKFRHKTLNDSKKLSAEQREKIY 61 Query: 73 EKI--TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + ++ + ID+ NI +A+ +A+ +V L P ALIDG + P Sbjct: 62 AELTTRENVHWTVCVVEVEEIDRINILRASHEAMRRSVTALATKPDHALIDGLPVRP-FP 120 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A++ GD++S SIAAAS+IAKVTRDR+M +++P Y F H GY T H +KE Sbjct: 121 IPHTALVGGDALSFSIAAASVIAKVTRDRIMVEMDQRHPGYAFGQHKGYGTELHLARLKE 180 Query: 191 KGPSCIHRLTFRPLRNLSV 209 GP IHR +F P+ + Sbjct: 181 HGPCPIHRRSFLPVEQAEL 199 >gi|107028815|ref|YP_625910.1| ribonuclease HII [Burkholderia cenocepacia AU 1054] gi|116690026|ref|YP_835649.1| ribonuclease HII [Burkholderia cenocepacia HI2424] gi|122977720|sp|Q1BHG8|RNH2_BURCA RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225172|sp|A0K8C9|RNH2_BURCH RecName: Full=Ribonuclease HII; Short=RNase HII gi|105897979|gb|ABF80937.1| Ribonuclease H [Burkholderia cenocepacia AU 1054] gi|116648115|gb|ABK08756.1| Ribonuclease H [Burkholderia cenocepacia HI2424] Length = 214 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 89/182 (48%), Positives = 120/182 (65%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LY+ I + + + Sbjct: 27 IVCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLDDSKVLSAKKRDALYDLIVTRSHAYCV 86 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS ID NI AT+ A+ AVE L V+P A IDG P L +A A++ GD++ Sbjct: 87 ASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LSVRAEAIVSGDALV 145 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+++P YGF+ H GY TAKH ++E GP HR +F P Sbjct: 146 PSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAHRRSFAP 205 Query: 204 LR 205 +R Sbjct: 206 VR 207 >gi|257085098|ref|ZP_05579459.1| ribonuclease HII [Enterococcus faecalis Fly1] gi|256993128|gb|EEU80430.1| ribonuclease HII [Enterococcus faecalis Fly1] Length = 255 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 91/196 (46%), Positives = 126/196 (64%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E +K +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KKRE LY Sbjct: 61 QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ I + A ID+ NI++AT A+ A+++L P LID + D+P Sbjct: 121 NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFTPDYLLIDAMQL--DVPQ 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM + YP YGF ++ GY T +H +++ Sbjct: 179 PQESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKY 238 Query: 192 GPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 239 GVTPIHRRTFAPIKDM 254 >gi|170733361|ref|YP_001765308.1| ribonuclease HII [Burkholderia cenocepacia MC0-3] gi|238688549|sp|B1JUD6|RNH2_BURCC RecName: Full=Ribonuclease HII; Short=RNase HII gi|169816603|gb|ACA91186.1| Ribonuclease H [Burkholderia cenocepacia MC0-3] Length = 214 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 89/182 (48%), Positives = 120/182 (65%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LY+ I + + + Sbjct: 27 IVCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLDDSKVLSAKKRDALYDLIVTRSHAYCV 86 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS ID NI AT+ A+ AVE L V+P A IDG P L +A A++ GD++ Sbjct: 87 ASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LSVRAEAIVSGDALV 145 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+++P YGF+ H GY TAKH ++E GP HR +F P Sbjct: 146 PSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAHRRSFAP 205 Query: 204 LR 205 +R Sbjct: 206 VR 207 >gi|325294887|ref|YP_004281401.1| ribonuclease H [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065335|gb|ADY73342.1| Ribonuclease H [Desulfurobacterium thermolithotrophum DSM 11699] Length = 236 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 83/195 (42%), Positives = 112/195 (57%), Gaps = 2/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E K +AGIDE GRG LAGPVV AA+I + IPF DSKK++ K+R+EL+ Sbjct: 9 QFEREYWNKGYKLIAGIDEAGRGPLAGPVVAAAVIFPQSVIPFLFKDSKKLTEKRRKELF 68 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 KI AI + + A IDK NI AT A+ A+ +L V P + D I E+ Sbjct: 69 FKIFEKAICVGVGFADSLEIDKLNILNATKLAVKRALSSLPVQPDFLITDALEI-EEFKD 127 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++ + KGD S S A AS++AKVTRD +M + +P YGF+ H GYPT H I+E Sbjct: 128 RSLVLTKGDEKSFSCACASVVAKVTRDFIMEKLAELFPAYGFEKHKGYPTKFHISKIEEI 187 Query: 192 GPSCIHRLTFRPLRN 206 G S +HR +F +R Sbjct: 188 GISPVHRRSFGRVRE 202 >gi|319939095|ref|ZP_08013459.1| ribonuclease HII [Streptococcus anginosus 1_2_62CV] gi|319812145|gb|EFW08411.1| ribonuclease HII [Streptococcus anginosus 1_2_62CV] Length = 260 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 91/197 (46%), Positives = 124/197 (62%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +AGIDEVGRG LAGPVV AA+IL N G+NDSKK+ KK +E+ Sbjct: 58 LRYEKELYATGCQYIAGIDEVGRGPLAGPVVAAAVILPKNYKIKGLNDSKKVPKKKHKEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+++ AI + I +Q ID+ NI++AT A+ AV NL+V P+ LID + D+ Sbjct: 118 YQEVLKQAISVGIGIKDNQVIDEVNIYEATKLAMLEAVGNLEVAPQHLLIDAMQL--DVQ 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRDR+M YP Y F +VGY T H + +K Sbjct: 176 VPQTSIIKGDANSLSIAAASIVAKVTRDRMMTNYELTYPGYDFAHNVGYGTQHHLEGLKR 235 Query: 191 KGPSCIHRLTFRPLRNL 207 KG + IHR TF P++++ Sbjct: 236 KGITPIHRTTFEPIKSM 252 >gi|253573503|ref|ZP_04850846.1| ribonuclease HII [Paenibacillus sp. oral taxon 786 str. D14] gi|251847031|gb|EES75036.1| ribonuclease HII [Paenibacillus sp. oral taxon 786 str. D14] Length = 206 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 90/200 (45%), Positives = 120/200 (60%), Gaps = 6/200 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + +AGIDEVGRG L G VV AA+IL + +NDSKK+S KKRE+L Sbjct: 5 LKYEREYWQAGYSHIAGIDEVGRGCLFGDVVAAAVILPQGLVLEDVNDSKKLSAKKREKL 64 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ I AI + I S ID+ NI +AT A+ AVE L + P LID + D+P Sbjct: 65 FDLIMEQAIAVGIGSVDAATIDQINIKQATRRAMKQAVEQLSIQPEYLLIDAEKV--DVP 122 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMR-IAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +VIKGD+ S SIAAASI+AKVTRDRL + +YP+YG H GY T H++ + Sbjct: 123 IPQLSVIKGDATSQSIAAASIVAKVTRDRLCQGEWDARYPEYGIAVHKGYATKLHREQLL 182 Query: 190 EKGPSCIHRLTFRPLRNLSV 209 GP+ +HR +F +RNL V Sbjct: 183 ALGPTPMHRKSF--MRNLFV 200 >gi|29376207|ref|NP_815361.1| ribonuclease HII [Enterococcus faecalis V583] gi|227518838|ref|ZP_03948887.1| ribonuclease HII [Enterococcus faecalis TX0104] gi|227553455|ref|ZP_03983504.1| ribonuclease HII [Enterococcus faecalis HH22] gi|256961843|ref|ZP_05566014.1| ribonuclease HII [Enterococcus faecalis Merz96] gi|293382908|ref|ZP_06628826.1| ribonuclease HII [Enterococcus faecalis R712] gi|293389603|ref|ZP_06634060.1| ribonuclease HII [Enterococcus faecalis S613] gi|312907622|ref|ZP_07766613.1| ribonuclease HII [Enterococcus faecalis DAPTO 512] gi|312910239|ref|ZP_07769086.1| ribonuclease HII [Enterococcus faecalis DAPTO 516] gi|39932363|sp|Q834J7|RNH2_ENTFA RecName: Full=Ribonuclease HII; Short=RNase HII gi|29343670|gb|AAO81431.1| ribonuclease HII [Enterococcus faecalis V583] gi|227073709|gb|EEI11672.1| ribonuclease HII [Enterococcus faecalis TX0104] gi|227177412|gb|EEI58384.1| ribonuclease HII [Enterococcus faecalis HH22] gi|256952339|gb|EEU68971.1| ribonuclease HII [Enterococcus faecalis Merz96] gi|291079573|gb|EFE16937.1| ribonuclease HII [Enterococcus faecalis R712] gi|291081220|gb|EFE18183.1| ribonuclease HII [Enterococcus faecalis S613] gi|310626650|gb|EFQ09933.1| ribonuclease HII [Enterococcus faecalis DAPTO 512] gi|311289512|gb|EFQ68068.1| ribonuclease HII [Enterococcus faecalis DAPTO 516] gi|315575779|gb|EFU87970.1| ribonuclease HII [Enterococcus faecalis TX0309B] gi|315580431|gb|EFU92622.1| ribonuclease HII [Enterococcus faecalis TX0309A] Length = 255 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 91/196 (46%), Positives = 126/196 (64%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E +K +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KKRE LY Sbjct: 61 QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ I + A ID+ NI++AT A+ A+++L P LID + D+P Sbjct: 121 NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFTPDYLLIDAMQL--DVPQ 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM + YP YGF ++ GY T +H +++ Sbjct: 179 PQESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKY 238 Query: 192 GPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 239 GVTPIHRRTFAPIKDM 254 >gi|241764771|ref|ZP_04762780.1| Ribonuclease H [Acidovorax delafieldii 2AN] gi|241365761|gb|EER60433.1| Ribonuclease H [Acidovorax delafieldii 2AN] Length = 205 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 83/182 (45%), Positives = 116/182 (63%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82 VAG+DE GRG LAGPVV AA+ILD N G+ DSKK++ +RE L+++I + A+ S Sbjct: 20 GLVAGVDEAGRGPLAGPVVAAAVILDDLNPIAGLADSKKLTAARREALFDEIRAKALCCS 79 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ AS + ID+ NI +ATL A+ AV L++ P A++DG +P L A A++ GD++ Sbjct: 80 IAEASVEEIDRLNILQATLLAMRRAVMGLRLKPVRAVVDGNRLPL-LDMPADAIVNGDAL 138 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKV RDR + +P YGF H GY TA H ++E G HR TF Sbjct: 139 VPAISAASILAKVHRDRWCVQIDEHFPQYGFAGHKGYGTAVHMAALREHGACVHHRRTFA 198 Query: 203 PL 204 P+ Sbjct: 199 PV 200 >gi|206560439|ref|YP_002231203.1| ribonuclease HII [Burkholderia cenocepacia J2315] gi|238693107|sp|B4ECL7|RNH2_BURCJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|198036480|emb|CAR52377.1| ribonuclease HII [Burkholderia cenocepacia J2315] Length = 214 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 89/182 (48%), Positives = 120/182 (65%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LY+ I + + + Sbjct: 27 IVCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKVLSAKKRDLLYDLIVARSHAYCV 86 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS ID NI AT+ A+ AVE L V+P A IDG P L +A A++ GD++ Sbjct: 87 ASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPT-LSVRAEAIVSGDALV 145 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+++P YGF+ H GY TAKH ++E GP HR +F P Sbjct: 146 PSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAHRRSFAP 205 Query: 204 LR 205 +R Sbjct: 206 VR 207 >gi|229162773|ref|ZP_04290730.1| Ribonuclease HII [Bacillus cereus R309803] gi|228620655|gb|EEK77524.1| Ribonuclease HII [Bacillus cereus R309803] Length = 257 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YENALREKGLAYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ AV NL P+ LID +P P Sbjct: 122 EIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ KYP YGF+ H+GY T +H + I G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGGKYPAYGFEQHMGYGTKQHLEAIAAHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|254994768|ref|ZP_05276958.1| ribonuclease HII (rnhB) [Anaplasma marginale str. Mississippi] Length = 239 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 91/205 (44%), Positives = 125/205 (60%), Gaps = 2/205 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKI 63 + P F +E +R + + G+DEVG GA+AGPVV AA+ L + I DSK + Sbjct: 1 MNRMPSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKAL 60 Query: 64 SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 S KKREEL+ KIT+ A + A + I++HNI A+ ++ A++NL V L+DG Sbjct: 61 SSKKREELFCKITAHARYGVGFARVREIEQHNILVASHISMKRALQNLGVKADLVLVDGS 120 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 P LP ++KGDSIS SIAAASIIAKVTRDR MR H++YP+Y ++ + GY T Sbjct: 121 RAPAGLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKA 180 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLS 208 H Q +K G + HR TF P++ LS Sbjct: 181 HMQSLKLYGKTAQHRSTFAPVKQLS 205 >gi|304414200|ref|ZP_07395568.1| Ribonuclease HII [Candidatus Regiella insecticola LSR1] gi|304283414|gb|EFL91810.1| Ribonuclease HII [Candidatus Regiella insecticola LSR1] Length = 224 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 87/181 (48%), Positives = 109/181 (60%), Gaps = 2/181 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGR L G VV AA+ILDP+ G+ DSKK+S KKR LY+ IT A SI Sbjct: 29 LIAGVDEVGRVPLVGAVVTAAVILDPSQPIEGLADSKKLSEKKRRALYQAITQKARSWSI 88 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI ATL A+ AV L + P LIDG P L AV+KGDS+ Sbjct: 89 GRAEPEEIDRLNILNATLLAMQRAVAGLDLTPDYVLIDGNRCPH-LSMPTMAVVKGDSLV 147 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M +++P YGF H GYPTA H + + G HR +F P Sbjct: 148 AEISAASILAKVTRDREMVALDQRFPGYGFAQHKGYPTALHLKKLAALGVIPDHRRSFAP 207 Query: 204 L 204 + Sbjct: 208 V 208 >gi|295113049|emb|CBL31686.1| Ribonuclease HII [Enterococcus sp. 7L76] gi|315145132|gb|EFT89148.1| ribonuclease HII [Enterococcus faecalis TX2141] gi|315160534|gb|EFU04551.1| ribonuclease HII [Enterococcus faecalis TX0645] gi|315168949|gb|EFU12966.1| ribonuclease HII [Enterococcus faecalis TX1341] Length = 255 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 91/196 (46%), Positives = 126/196 (64%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E +K +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KKRE LY Sbjct: 61 QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ I + A ID+ NI++AT A+ A+++L P LID + D+P Sbjct: 121 NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLIDAMQL--DVPQ 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM + YP YGF ++ GY T +H +++ Sbjct: 179 PQESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKY 238 Query: 192 GPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 239 GVTPIHRRTFAPIKDM 254 >gi|218898990|ref|YP_002447401.1| ribonuclease HII [Bacillus cereus G9842] gi|228902340|ref|ZP_04066497.1| Ribonuclease [Bacillus thuringiensis IBL 4222] gi|228909662|ref|ZP_04073485.1| Ribonuclease [Bacillus thuringiensis IBL 200] gi|228966782|ref|ZP_04127826.1| Ribonuclease [Bacillus thuringiensis serovar sotto str. T04001] gi|226736813|sp|B7IUJ6|RNH2_BACC2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|218543986|gb|ACK96380.1| ribonuclease HII [Bacillus cereus G9842] gi|228792881|gb|EEM40439.1| Ribonuclease [Bacillus thuringiensis serovar sotto str. T04001] gi|228849951|gb|EEM94782.1| Ribonuclease [Bacillus thuringiensis IBL 200] gi|228857309|gb|EEN01812.1| Ribonuclease [Bacillus thuringiensis IBL 4222] Length = 257 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 128/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID NI++AT A+ AV NL P+ LID +P P Sbjct: 122 EIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP+YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEAIEVHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLDEHRKSFAPIKDM 254 >gi|317478434|ref|ZP_07937595.1| ribonuclease HII [Bacteroides sp. 4_1_36] gi|316905393|gb|EFV27186.1| ribonuclease HII [Bacteroides sp. 4_1_36] Length = 202 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 105/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPTDFKNELLNDSKQLTEKQRYTLREVIEKEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NI A+ A++ AV+ L V P+ LIDG + V+KGD LS Sbjct: 73 VSPEEIDKINILNASFLAMHRAVDQLNVRPQHLLIDGNRFKKYRDLPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H++YP Y ++ + GYPT KH+ I E+G + HRLTF L Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPYYDWNRNKGYPTKKHRAAIAERGTTPYHRLTFNLL 191 >gi|49478406|ref|YP_037898.1| ribonuclease HII [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118479059|ref|YP_896210.1| ribonuclease HII [Bacillus thuringiensis str. Al Hakam] gi|225865818|ref|YP_002751196.1| ribonuclease HII [Bacillus cereus 03BB102] gi|229186077|ref|ZP_04313246.1| Ribonuclease [Bacillus cereus BGSC 6E1] gi|301055327|ref|YP_003793538.1| ribonuclease HII [Bacillus anthracis CI] gi|73917596|sp|Q6HEX8|RNH2_BACHK RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225168|sp|A0RHL0|RNH2_BACAH RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807966|sp|C1EP61|RNH2_BACC3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|49329962|gb|AAT60608.1| ribonuclease HII (RNase HII) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118418284|gb|ABK86703.1| RNase HII [Bacillus thuringiensis str. Al Hakam] gi|225786445|gb|ACO26662.1| ribonuclease HII [Bacillus cereus 03BB102] gi|228597253|gb|EEK54904.1| Ribonuclease [Bacillus cereus BGSC 6E1] gi|300377496|gb|ADK06400.1| ribonuclease HII [Bacillus cereus biovar anthracis str. CI] Length = 257 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KRE Y Sbjct: 62 YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYG 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ A+ NL P LID +P P Sbjct: 122 EIKAKAIAIGVGIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|332140483|ref|YP_004426221.1| ribonuclease HII [Alteromonas macleodii str. 'Deep ecotype'] gi|254807962|sp|B4RVJ6|RNH2_ALTMD RecName: Full=Ribonuclease HII; Short=RNase HII gi|327550505|gb|AEA97223.1| ribonuclease HII [Alteromonas macleodii str. 'Deep ecotype'] Length = 190 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 86/184 (46%), Positives = 112/184 (60%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK+S KKR L ++I A+ +I Sbjct: 4 LIAGVDEVGRGPLVGDVVTAAVILDPQNPIEGLTDSKKLSEKKRVALAQEIREKALYWNI 63 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 AS + IDK NI AT+ A+ AVE L V P +DG +P + AV+KGDS+ Sbjct: 64 GRASPEEIDKLNILHATMLAMIRAVEGLPVKPDFVRVDGNRLPA-WNFDSEAVVKGDSLH 122 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASIIAKV RD M H+ +P Y F H GYPT H + I E G +R +F+P Sbjct: 123 AEISAASIIAKVERDNDMISLHEAFPQYNFAGHKGYPTKAHFEAIAEYGILDCYRKSFKP 182 Query: 204 LRNL 207 ++ L Sbjct: 183 VKAL 186 >gi|154497939|ref|ZP_02036317.1| hypothetical protein BACCAP_01919 [Bacteroides capillosus ATCC 29799] gi|150272929|gb|EDN00086.1| hypothetical protein BACCAP_01919 [Bacteroides capillosus ATCC 29799] Length = 210 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 81/198 (40%), Positives = 117/198 (59%), Gaps = 4/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +E+E +E+ + G DE G G LAGPV A+IL I G+NDSKK++ K+R+ L Sbjct: 10 WEIERSCKERGYQLICGADEAGAGPLAGPVYAGAVILPEGLILEGLNDSKKVTPKRRDRL 69 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +E+I AI +++S + ID NI A + A+ A++ L+ P ALIDG + + Sbjct: 70 FEEIQEKAIAWAVASVDEKEIDAINILNARMKAMEMAIQALKPAPDYALIDGNR-DKGIT 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 V+KGD S +IAAASI+AKV+RDR M K YP+Y F+ H GY T H +++ + Sbjct: 129 IAHETVVKGDGRSANIAAASILAKVSRDRYMEEMAKLYPEYEFERHKGYGTKLHFELLMK 188 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP IHR +F L+ L Sbjct: 189 YGPCPIHRRSF--LKKLE 204 >gi|228916474|ref|ZP_04080040.1| Ribonuclease [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228947556|ref|ZP_04109846.1| Ribonuclease [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123351|ref|ZP_04252555.1| Ribonuclease [Bacillus cereus 95/8201] gi|228660127|gb|EEL15763.1| Ribonuclease [Bacillus cereus 95/8201] gi|228812076|gb|EEM58407.1| Ribonuclease [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228843053|gb|EEM88135.1| Ribonuclease [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 257 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KRE Y Sbjct: 62 YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYG 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ A+ NL P LID +P P Sbjct: 122 EIKAKAIAIGVGIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|240124405|ref|ZP_04737361.1| ribonuclease HII [Neisseria gonorrhoeae PID332] Length = 194 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 79/182 (43%), Positives = 105/182 (57%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I A+ +++ Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKEQAVAWHVAA 65 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ++ + I NI AT+ A+ AV L P IDG IPE L A AV+KGDS + Sbjct: 66 STPEEIASLNILHATMLAMKRAVYGLAARPEKIFIDGNRIPEHLGIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M ++ P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRRPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NL 207 NL Sbjct: 186 NL 187 >gi|229157413|ref|ZP_04285491.1| Ribonuclease [Bacillus cereus ATCC 4342] gi|228626140|gb|EEK82889.1| Ribonuclease [Bacillus cereus ATCC 4342] Length = 257 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 91/195 (46%), Positives = 129/195 (66%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + A+ I + S + ID+ NI++AT A+ AV NL P+ LID +P P Sbjct: 122 EIKAQAVAIGVGIVSPRVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 ILEEHRKSFAPIKDM 254 >gi|160891452|ref|ZP_02072455.1| hypothetical protein BACUNI_03903 [Bacteroides uniformis ATCC 8492] gi|156858859|gb|EDO52290.1| hypothetical protein BACUNI_03903 [Bacteroides uniformis ATCC 8492] Length = 202 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 105/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPTDFKNELLNDSKQLTEKQRYTLREVIEKEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NI A+ A++ AV+ L V P+ LIDG + V+KGD LS Sbjct: 73 VSPEEIDKINILNASFLAMHRAVDQLNVRPQHLLIDGNRFKKYRDLPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H++YP Y ++ + GYPT KH+ I E+G + HRLTF L Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPYYDWNRNKGYPTKKHRAAIAERGTTPYHRLTFNLL 191 >gi|113868020|ref|YP_726509.1| ribonuclease HII [Ralstonia eutropha H16] gi|123133958|sp|Q0KA30|RNH2_RALEH RecName: Full=Ribonuclease HII; Short=RNase HII gi|113526796|emb|CAJ93141.1| Ribonuclease HII [Ralstonia eutropha H16] Length = 238 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 84/201 (41%), Positives = 122/201 (60%), Gaps = 5/201 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P L+ + + G+DE GRG LAGPV AA+ILDP G+ DSK ++ KRE Sbjct: 9 PQMGLDLAPAAAAVQRLCGVDEAGRGPLAGPVYAAAVILDPKRPIRGLADSKILTAAKRE 68 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSI 125 +LYEKI A+ I+ A+ + ID NI A++ A+ AV+ L ++P +DG Sbjct: 69 QLYEKICERALGWHIAFATVEEIDTLNILHASMLAMQRAVQGLAASGIVPDLVQVDGNRC 128 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P +P A+++GD++ +I+AASI+AKV RDR +R+ H++YP YGFDSHVGY T +H Sbjct: 129 PR-VPFPVEAIVQGDALVKAISAASILAKVARDRELRVLHERYPQYGFDSHVGYGTPQHL 187 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 + E G + HR +F P+R Sbjct: 188 AALAEFGATPHHRRSFAPVRE 208 >gi|270295437|ref|ZP_06201638.1| ribonuclease HII [Bacteroides sp. D20] gi|270274684|gb|EFA20545.1| ribonuclease HII [Bacteroides sp. D20] Length = 202 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 105/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPTDFKNELLNDSKQLTEKQRYTLREVIEKEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NI A+ A++ AV+ L V P+ LIDG + V+KGD LS Sbjct: 73 ISPEEIDKINILNASFLAMHRAVDQLNVRPQHLLIDGNRFKKYRDLPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H++YP Y ++ + GYPT KH+ I E+G + HRLTF L Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPYYDWNRNKGYPTKKHRAAIAERGTTPYHRLTFNLL 191 >gi|218264672|ref|ZP_03478435.1| hypothetical protein PRABACTJOHN_04144 [Parabacteroides johnsonii DSM 18315] gi|218221859|gb|EEC94509.1| hypothetical protein PRABACTJOHN_04144 [Parabacteroides johnsonii DSM 18315] Length = 199 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 103/179 (57%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL P+ +NDSK++S KKR L I AI ++ Sbjct: 13 AGCDEAGRGCLAGPVYAAAVILPPDFHNEDLNDSKQLSEKKRYALRPIIEQEAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI KA+ A++ A++ L+V P LIDG + V+KGD LS Sbjct: 73 VTPEEIDRINILKASFLAMHRAIDGLKVKPEHLLIDGNRFTPYPGVKHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M +YP Y + + GYPT H++ I+E G + HR TF L Sbjct: 133 IAAASILAKTYRDDYMNSLDLEYPAYHWKENKGYPTKAHREAIRECGITPYHRKTFTLL 191 >gi|313114085|ref|ZP_07799637.1| ribonuclease HII [Faecalibacterium cf. prausnitzii KLE1255] gi|310623494|gb|EFQ06897.1| ribonuclease HII [Faecalibacterium cf. prausnitzii KLE1255] Length = 215 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 87/193 (45%), Positives = 116/193 (60%), Gaps = 2/193 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P +E +A VR + AG+DE GRG L GPV VAA ILDP N FGINDSKK++ KKRE Sbjct: 12 PLYEYDAAVRSQ-YGCFAGVDEAGRGPLCGPVCVAACILDPENPVFGINDSKKLTEKKRE 70 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L+++I A+ I + ID+ NI AT+ + AVE L ++P L+DG P Sbjct: 71 ALFDEIIEKALAYKIVFVGPEIIDRDNILNATMGGMKQAVEELDIVPNLVLVDGNRTPAG 130 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L A V+KGD+ S SI AAS++AKV+RDR M ++YP Y H GYPT H ++I Sbjct: 131 LLVPAQPVVKGDATSASIGAASVLAKVSRDRYMLELDRQYPQYQLAKHKGYPTKLHYELI 190 Query: 189 KEKGPSCIHRLTF 201 + G +R +F Sbjct: 191 AQYGIQPFYRRSF 203 >gi|320529141|ref|ZP_08030233.1| ribonuclease HII [Selenomonas artemidis F0399] gi|320138771|gb|EFW30661.1| ribonuclease HII [Selenomonas artemidis F0399] Length = 255 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 89/187 (47%), Positives = 115/187 (61%), Gaps = 2/187 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 VAG+DE GRG LAGPV VAA IL +NDSKK+S K R EL+E+IT AI Sbjct: 68 GHILVAGVDEAGRGPLAGPVAVAAAILPQELYLPRLNDSKKLSAKVRAELFEEITEKAIA 127 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 ++ ID+ NI +AT +Y AV L P L+D +P+ L ++IKGD Sbjct: 128 YHVTLIDAAEIDRINILQATRRGMYEAVAALTPAPEEVLVDAVELPQ-LRMPVQSIIKGD 186 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + S+SIAAASI+AKVTRDRLM +YP YGF H GY TA+H I+ +G + IHR T Sbjct: 187 AKSVSIAAASILAKVTRDRLMERYDTEYPGYGFAGHKGYGTAEHIAAIRAQGVTPIHRRT 246 Query: 201 FRPLRNL 207 F P+R++ Sbjct: 247 FEPIRSM 253 >gi|198274378|ref|ZP_03206910.1| hypothetical protein BACPLE_00523 [Bacteroides plebeius DSM 17135] gi|198272744|gb|EDY97013.1| hypothetical protein BACPLE_00523 [Bacteroides plebeius DSM 17135] Length = 200 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 100/179 (55%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAG V AA+IL P +NDSKK++ K+R EL I A ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPPGFQNEMLNDSKKLTEKQRYELRTVIEKEATAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + IDK NI A+ A++ AV L+V P+ LIDG ++KGD LS Sbjct: 73 VTPEEIDKINILNASFLAMHRAVSQLKVTPQHLLIDGNRFNPYPGIPHTTIVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H++YP Y + + GYPT KH+ I G + HR++F L Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPMYDWKGNKGYPTKKHRAAIAAYGTTPYHRMSFNLL 191 >gi|167586869|ref|ZP_02379257.1| ribonuclease HII [Burkholderia ubonensis Bu] Length = 214 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 90/182 (49%), Positives = 120/182 (65%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LYE I + + + Sbjct: 27 IVCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLDDSKALSAKKRDALYELIVARSRAYCV 86 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS ID NI AT+ A+ AVE L V+P A IDG P L +A A++ GD++ Sbjct: 87 ASASVDEIDTLNILHATMLAMKRAVEGLAVVPTLAQIDGNRCPT-LSVRAEAIVSGDALV 145 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+++P YGF+ H GY TAKH ++E GP HR +F P Sbjct: 146 PSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAHRRSFAP 205 Query: 204 LR 205 +R Sbjct: 206 VR 207 >gi|197120709|ref|YP_002132660.1| ribonuclease HII [Anaeromyxobacter sp. K] gi|196170558|gb|ACG71531.1| Ribonuclease H [Anaeromyxobacter sp. K] Length = 283 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 80/195 (41%), Positives = 116/195 (59%), Gaps = 2/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 EA + E+ + VAG+DE G LAGPVV A +L + P GI+DSK++ +RE L Sbjct: 66 LRYEAELWERGLVHVAGVDEAGMAPLAGPVVAGACVLPLDYRPRGIDDSKQLDRAERERL 125 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 E I +A+ +++ A + ID+ N++ A + A+ AV+ L P L+D R +P DLP Sbjct: 126 AEDIKRNAVCWAVARAEVEEIDRLNVYWAGMLALRRAVDGLSARPEHLLVDARKLP-DLP 184 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++ GD++SL+IAAASI+AK RD LM +P YGF H GYPTA+H + + Sbjct: 185 FPQTPIVHGDALSLTIAAASILAKTARDALMAELDLVHPGYGFARHKGYPTAEHFEALGR 244 Query: 191 KGPSCIHRLTFRPLR 205 G IHR +F P+R Sbjct: 245 LGACPIHRRSFTPVR 259 >gi|225568157|ref|ZP_03777182.1| hypothetical protein CLOHYLEM_04231 [Clostridium hylemonae DSM 15053] gi|225163110|gb|EEG75729.1| hypothetical protein CLOHYLEM_04231 [Clostridium hylemonae DSM 15053] Length = 219 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 89/186 (47%), Positives = 113/186 (60%), Gaps = 4/186 (2%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII- 81 + GIDEVGRG LAGPVV A+IL ++ +NDSKK+S KKRE LY++I A+ Sbjct: 36 YRYICGIDEVGRGPLAGPVVAGAVILPKDDPVLYLNDSKKLSEKKREMLYDEIMEKAVAT 95 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I Q ID+ NI +AT +A+ A+ +L V P L D +IP + +IKGD+ Sbjct: 96 GIGIVGPQRIDEINILQATYEAMRMAIADLPVQPDILLNDAVTIP-GVEILQVPIIKGDA 154 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 S+SIAAASIIAKVTRDRLM K P Y S+ GY T H +KE GPS IHR TF Sbjct: 155 KSVSIAAASIIAKVTRDRLMVEYDKILPGYDLASNKGYGTKAHIAGLKEHGPSPIHRATF 214 Query: 202 RPLRNL 207 ++N Sbjct: 215 --IKNF 218 >gi|284102975|ref|ZP_06386058.1| Ribonuclease HII [Candidatus Poribacteria sp. WGA-A3] gi|283830303|gb|EFC34542.1| Ribonuclease HII [Candidatus Poribacteria sp. WGA-A3] Length = 216 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 86/198 (43%), Positives = 119/198 (60%), Gaps = 2/198 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P +LE R + VAG+DE GRG LAGPVV AA+I+ ++DSKK+S +RE Sbjct: 13 PTCDLEEEARTRGYRRVAGLDEAGRGPLAGPVVGAAVIVPRRFSLRSLDDSKKVSPTERE 72 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L+ IT SA I AS ID N+ +AT A A+ L++ P L+DG + D Sbjct: 73 ALFSVITESATAWGIGVASEAEIDSLNVLRATWLAWQRAINQLRIPPDFLLVDG-HLGAD 131 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + +VI GD +S SIAAASI+AKV RDR+M H++ P Y F H GYPT +H +++ Sbjct: 132 VFIPHRSVIHGDRLSSSIAAASILAKVFRDRIMCEYHERDPRYRFHIHKGYPTPEHLRLL 191 Query: 189 KEKGPSCIHRLTFRPLRN 206 ++ GPS +HR +F P+R Sbjct: 192 RQFGPSPVHRHSFGPVRR 209 >gi|224825027|ref|ZP_03698133.1| Ribonuclease H [Lutiella nitroferrum 2002] gi|224602698|gb|EEG08875.1| Ribonuclease H [Lutiella nitroferrum 2002] Length = 193 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 80/181 (44%), Positives = 113/181 (62%), Gaps = 1/181 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DE GRG LAG V AA+ILDP G+ DSKK+S K+R+EL I ++ I+ Sbjct: 2 IAGVDEAGRGPLAGAVFAAAVILDPARPIVGLADSKKLSEKQRDELAPLIRERSLAWCIA 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS ID+ NI +AT+ A+ AV L V+P LIDG +P+ + A A++KGD++ Sbjct: 62 SASVDEIDRLNILQATMLAMSRAVAGLSVLPAEVLIDGNRVPKGIAVPARAIVKGDALEP 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AK RD + +P++GF H GYPTA+H I+ G HR TF P+ Sbjct: 122 AISAASILAKTARDAELVALDALHPEFGFARHKGYPTAEHLAAIERFGVLPEHRRTFGPV 181 Query: 205 R 205 + Sbjct: 182 K 182 >gi|213610034|ref|ZP_03369860.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 184 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 84/179 (46%), Positives = 109/179 (60%), Gaps = 2/179 (1%) Query: 29 IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSAS 87 +DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LY++I A+ S+ A Sbjct: 1 MDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLSLYDEIKEKALSWSLGRAE 60 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 ID+ NI AT+ A+ AV L + P LIDG PE LP + AV+KGDS I+ Sbjct: 61 AHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPE-LPVPSMAVVKGDSRVAEIS 119 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 AASI+AKVTRD M +P YGF H GYPTA H + + + G + HR +F P++ Sbjct: 120 AASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAQYGATAHHRRSFAPVKR 178 >gi|327398743|ref|YP_004339612.1| Ribonuclease H [Hippea maritima DSM 10411] gi|327181372|gb|AEA33553.1| Ribonuclease H [Hippea maritima DSM 10411] Length = 382 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 85/186 (45%), Positives = 114/186 (61%), Gaps = 2/186 (1%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAII 81 M AG+DE GRG AGPVV A +IL+ + G I+DSKK+S KKREELY I ++I Sbjct: 1 MGKTAGVDEAGRGPWAGPVVAACVILNKDIPHLGDIDDSKKLSPKKREELYRVIKENSIY 60 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I S++ IDK I KA AI A++ + P LIDG+ DLP + +I+GD+ Sbjct: 61 GIGVVSNKEIDKLGIVKAVELAIKRAIDVMDEKPSFLLIDGKD-RFDLPIKYKTIIEGDA 119 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAASI+AKV RDR M + YP YGF+ H GY T H +++ GP IHR +F Sbjct: 120 KVKSIAAASILAKVWRDRYMELVADIYPKYGFEKHKGYGTKAHTLALEKYGPCQIHRFSF 179 Query: 202 RPLRNL 207 +P++ + Sbjct: 180 KPIQRV 185 >gi|254739600|ref|ZP_05197294.1| ribonuclease HII [Bacillus anthracis str. Kruger B] Length = 257 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 93/196 (47%), Positives = 128/196 (65%), Gaps = 3/196 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KRE Y Sbjct: 62 YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYG 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ A+ NL P LID +P P Sbjct: 122 EIKAKAIAIGVGIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPA--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239 Query: 193 PSCIHRLTFRPLRNLS 208 HR +F P+++++ Sbjct: 240 VLEEHRKSFAPIKDMN 255 >gi|229545737|ref|ZP_04434462.1| ribonuclease HII [Enterococcus faecalis TX1322] gi|229549926|ref|ZP_04438651.1| ribonuclease HII [Enterococcus faecalis ATCC 29200] gi|255972709|ref|ZP_05423295.1| ribonuclease HII [Enterococcus faecalis T1] gi|256619148|ref|ZP_05475994.1| ribonuclease HII [Enterococcus faecalis ATCC 4200] gi|256762584|ref|ZP_05503164.1| ribonuclease HII [Enterococcus faecalis T3] gi|256853210|ref|ZP_05558580.1| ribonuclease HII [Enterococcus faecalis T8] gi|256959064|ref|ZP_05563235.1| ribonuclease HII [Enterococcus faecalis DS5] gi|256965040|ref|ZP_05569211.1| ribonuclease HII [Enterococcus faecalis HIP11704] gi|257079095|ref|ZP_05573456.1| ribonuclease HII [Enterococcus faecalis JH1] gi|257082466|ref|ZP_05576827.1| ribonuclease HII [Enterococcus faecalis E1Sol] gi|257086659|ref|ZP_05581020.1| ribonuclease HII [Enterococcus faecalis D6] gi|257416178|ref|ZP_05593172.1| ribonuclease HII [Enterococcus faecalis AR01/DG] gi|257419380|ref|ZP_05596374.1| ribonuclease HII [Enterococcus faecalis T11] gi|257422526|ref|ZP_05599516.1| ribonuclease HII [Enterococcus faecalis X98] gi|294781634|ref|ZP_06746970.1| ribonuclease HII [Enterococcus faecalis PC1.1] gi|300860321|ref|ZP_07106408.1| ribonuclease HII [Enterococcus faecalis TUSoD Ef11] gi|307270933|ref|ZP_07552216.1| ribonuclease HII [Enterococcus faecalis TX4248] gi|307273138|ref|ZP_07554384.1| ribonuclease HII [Enterococcus faecalis TX0855] gi|307274873|ref|ZP_07556036.1| ribonuclease HII [Enterococcus faecalis TX2134] gi|307289192|ref|ZP_07569148.1| ribonuclease HII [Enterococcus faecalis TX0109] gi|307291911|ref|ZP_07571780.1| ribonuclease HII [Enterococcus faecalis TX0411] gi|312899500|ref|ZP_07758830.1| ribonuclease HII [Enterococcus faecalis TX0470] gi|312951583|ref|ZP_07770479.1| ribonuclease HII [Enterococcus faecalis TX0102] gi|229304939|gb|EEN70935.1| ribonuclease HII [Enterococcus faecalis ATCC 29200] gi|229309187|gb|EEN75174.1| ribonuclease HII [Enterococcus faecalis TX1322] gi|255963727|gb|EET96203.1| ribonuclease HII [Enterococcus faecalis T1] gi|256598675|gb|EEU17851.1| ribonuclease HII [Enterococcus faecalis ATCC 4200] gi|256683835|gb|EEU23530.1| ribonuclease HII [Enterococcus faecalis T3] gi|256711669|gb|EEU26707.1| ribonuclease HII [Enterococcus faecalis T8] gi|256949560|gb|EEU66192.1| ribonuclease HII [Enterococcus faecalis DS5] gi|256955536|gb|EEU72168.1| ribonuclease HII [Enterococcus faecalis HIP11704] gi|256987125|gb|EEU74427.1| ribonuclease HII [Enterococcus faecalis JH1] gi|256990496|gb|EEU77798.1| ribonuclease HII [Enterococcus faecalis E1Sol] gi|256994689|gb|EEU81991.1| ribonuclease HII [Enterococcus faecalis D6] gi|257158006|gb|EEU87966.1| ribonuclease HII [Enterococcus faecalis ARO1/DG] gi|257161208|gb|EEU91168.1| ribonuclease HII [Enterococcus faecalis T11] gi|257164350|gb|EEU94310.1| ribonuclease HII [Enterococcus faecalis X98] gi|294451330|gb|EFG19796.1| ribonuclease HII [Enterococcus faecalis PC1.1] gi|300849360|gb|EFK77110.1| ribonuclease HII [Enterococcus faecalis TUSoD Ef11] gi|306496909|gb|EFM66457.1| ribonuclease HII [Enterococcus faecalis TX0411] gi|306499901|gb|EFM69262.1| ribonuclease HII [Enterococcus faecalis TX0109] gi|306508321|gb|EFM77428.1| ribonuclease HII [Enterococcus faecalis TX2134] gi|306510123|gb|EFM79147.1| ribonuclease HII [Enterococcus faecalis TX0855] gi|306512431|gb|EFM81080.1| ribonuclease HII [Enterococcus faecalis TX4248] gi|310630549|gb|EFQ13832.1| ribonuclease HII [Enterococcus faecalis TX0102] gi|311293370|gb|EFQ71926.1| ribonuclease HII [Enterococcus faecalis TX0470] gi|315027181|gb|EFT39113.1| ribonuclease HII [Enterococcus faecalis TX2137] gi|315029298|gb|EFT41230.1| ribonuclease HII [Enterococcus faecalis TX4000] gi|315034056|gb|EFT45988.1| ribonuclease HII [Enterococcus faecalis TX0017] gi|315037065|gb|EFT48997.1| ribonuclease HII [Enterococcus faecalis TX0027] gi|315147349|gb|EFT91365.1| ribonuclease HII [Enterococcus faecalis TX4244] gi|315152395|gb|EFT96411.1| ribonuclease HII [Enterococcus faecalis TX0031] gi|315155667|gb|EFT99683.1| ribonuclease HII [Enterococcus faecalis TX0043] gi|315158162|gb|EFU02179.1| ribonuclease HII [Enterococcus faecalis TX0312] gi|315164101|gb|EFU08118.1| ribonuclease HII [Enterococcus faecalis TX1302] gi|315169817|gb|EFU13834.1| ribonuclease HII [Enterococcus faecalis TX1342] gi|315172218|gb|EFU16235.1| ribonuclease HII [Enterococcus faecalis TX1346] gi|327535218|gb|AEA94052.1| ribonuclease H [Enterococcus faecalis OG1RF] Length = 255 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 91/196 (46%), Positives = 126/196 (64%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E +K +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KKRE LY Sbjct: 61 QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ I + A ID+ NI++AT A+ A+++L P LID + D+P Sbjct: 121 NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLIDAMQL--DVPQ 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM + YP YGF ++ GY T +H +++ Sbjct: 179 PQESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKY 238 Query: 192 GPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 239 GVTPIHRRTFAPIKDM 254 >gi|114764188|ref|ZP_01443426.1| ribonuclease HII [Pelagibaca bermudensis HTCC2601] gi|114543340|gb|EAU46356.1| ribonuclease HII [Roseovarius sp. HTCC2601] Length = 215 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 93/207 (44%), Positives = 136/207 (65%), Gaps = 1/207 (0%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 M + P E + +N+ VAG+DEVGRG LAGPVV AA++LDP IP G+NDS Sbjct: 1 MVFMGGMDGPDDSFETPLWGENL-RVAGVDEVGRGPLAGPVVAAAVVLDPLCIPPGLNDS 59 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 KK+S K+R L + A +SI A+ + ID+ NI +A+L A++ AV L+ + AL+ Sbjct: 60 KKLSAKRRARLAGWLHECAEVSIGVATVEEIDELNILQASLLAMHRAVTGLKRPAQHALV 119 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DGR IP LPC A +IKGD S+SIAAAS++AK RDRLMR +++P YG++++ GY Sbjct: 120 DGRFIPPQLPCHATPIIKGDGRSVSIAAASVVAKCYRDRLMRDLAQQHPGYGWETNAGYG 179 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNL 207 + KH++ ++ G + HR +F+P+ N+ Sbjct: 180 SKKHKEALQNLGVTPHHRRSFKPIHNI 206 >gi|312903393|ref|ZP_07762573.1| ribonuclease HII [Enterococcus faecalis TX0635] gi|310633269|gb|EFQ16552.1| ribonuclease HII [Enterococcus faecalis TX0635] gi|315577621|gb|EFU89812.1| ribonuclease HII [Enterococcus faecalis TX0630] Length = 255 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 91/196 (46%), Positives = 126/196 (64%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E +K +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KKRE LY Sbjct: 61 QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ I + A ID+ NI++AT A+ A+++L P LID + D+P Sbjct: 121 NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLIDAMQL--DVPQ 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM + YP YGF ++ GY T +H +++ Sbjct: 179 PQESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKY 238 Query: 192 GPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 239 GVTPIHRRTFAPIKDM 254 >gi|255975761|ref|ZP_05426347.1| ribonuclease HII [Enterococcus faecalis T2] gi|307277980|ref|ZP_07559064.1| ribonuclease HII [Enterococcus faecalis TX0860] gi|255968633|gb|EET99255.1| ribonuclease HII [Enterococcus faecalis T2] gi|306505377|gb|EFM74563.1| ribonuclease HII [Enterococcus faecalis TX0860] Length = 255 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 91/196 (46%), Positives = 126/196 (64%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E +K +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KKRE LY Sbjct: 61 QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ I + A ID+ NI++AT A+ A+++L P LID + D+P Sbjct: 121 NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLIDAMQL--DVPQ 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM + YP YGF ++ GY T +H +++ Sbjct: 179 PQESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKY 238 Query: 192 GPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 239 GVTPIHRRTFAPIKDM 254 >gi|194335200|ref|YP_002016994.1| Ribonuclease H [Pelodictyon phaeoclathratiforme BU-1] gi|238693361|sp|B4SAK8|RNH2_PELPB RecName: Full=Ribonuclease HII; Short=RNase HII gi|194307677|gb|ACF42377.1| Ribonuclease H [Pelodictyon phaeoclathratiforme BU-1] Length = 206 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 86/202 (42%), Positives = 115/202 (56%), Gaps = 8/202 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-----INDSKKISHKK 67 + E + + V GIDE GRG LAGPVV AA+I P G +NDSKK+S + Sbjct: 4 DYEWPLW-QTTALVCGIDEAGRGPLAGPVVAAAVIFPRWFRPVGTILERVNDSKKLSAAE 62 Query: 68 REELYEKIT-SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE L I ++A +++ + ID+ NI +AT+ A+ AV L + P L+DG Sbjct: 63 RELLAPAIRNAAAFWAVAEVDPETIDQINILQATMLAMNQAVAALPIQPELLLVDGNRFR 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 +LP V+KGDS SIAAAS++AK RD LM +YP YGF+ HVGYPT H + Sbjct: 123 TELPIPYETVVKGDSKVFSIAAASVLAKTHRDELMVAYASEYPQYGFERHVGYPTRAHVE 182 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 I++ G IHR +FR LR L Sbjct: 183 AIRQHGRCPIHRQSFR-LRQLG 203 >gi|187478242|ref|YP_786266.1| ribonuclease HII [Bordetella avium 197N] gi|97182295|sp|Q2L146|RNH2_BORA1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|115422828|emb|CAJ49356.1| ribonuclease HII [Bordetella avium 197N] Length = 202 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 84/185 (45%), Positives = 112/185 (60%), Gaps = 2/185 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG+DE GRG LAG V AA+ILDP G+ DSK + ++RE L E+I + A+ I+ Sbjct: 17 VAGVDEAGRGPLAGAVYAAAVILDPQRPIDGLADSKVLKAERRERLAEQIKAQALSWCIA 76 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID NI +ATL A+ AVE L +P AL+DG P L C +IKGD++ Sbjct: 77 CASTDEIDSMNILRATLLAMQRAVEGLNQLPSLALVDGNQAPR-LRCAVQTIIKGDALVP 135 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AK RD ++ H YP YGFD H GY TA H ++E GP HR +F P+ Sbjct: 136 AISAASILAKTARDAELQRLHALYPQYGFDQHKGYGTALHLARLREYGPCPEHRRSFAPI 195 Query: 205 RNLSV 209 + + Sbjct: 196 KAFGI 200 >gi|153874551|ref|ZP_02002729.1| Ribonuclease HII [Beggiatoa sp. PS] gi|152068988|gb|EDN67274.1| Ribonuclease HII [Beggiatoa sp. PS] Length = 197 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 82/186 (44%), Positives = 119/186 (63%), Gaps = 2/186 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG LAGPV+ AA+ILD + G+ DSK +S K+RE L ++I A+ ++ Sbjct: 9 LIAGVDEVGRGPLAGPVIAAAVILDEAHPIVGLADSKTLSEKRREALAKEIRQRALAYAL 68 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID NI +A+L A+ AV+NL ++P L+DG+ P+ L C A+I+GD Sbjct: 69 GRAEVEEIDHINILQASLLAMQRAVKNLPIVPEHVLVDGKFCPQ-LDCSVEAIIQGDKKV 127 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RD MR YP YGF +H GYPT H++ ++ G + IHR +F P Sbjct: 128 QVISAASILAKVVRDEEMREMDHLYPGYGFAAHKGYPTRAHREALQRLGATVIHRRSFAP 187 Query: 204 LRNLSV 209 +R + + Sbjct: 188 VRQVLL 193 >gi|228935151|ref|ZP_04097978.1| Ribonuclease [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824516|gb|EEM70321.1| Ribonuclease [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 257 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 126/195 (64%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KRE Y+ Sbjct: 62 YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID+ NI++AT A+ AV NL LID +P P Sbjct: 122 EIKEKAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTTEYLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|193215094|ref|YP_001996293.1| ribonuclease HII [Chloroherpeton thalassium ATCC 35110] gi|238692680|sp|B3QRP3|RNH2_CHLT3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|193088571|gb|ACF13846.1| Ribonuclease H [Chloroherpeton thalassium ATCC 35110] Length = 204 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 88/195 (45%), Positives = 112/195 (57%), Gaps = 6/195 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKR 68 E+ +K + G+DEVGRG LAGPVV AA+I D P GI +DSK + H+ R Sbjct: 4 AFESPYWKK-FQYICGVDEVGRGPLAGPVVAAAVIFDRYFEPSGILEQIDDSKALRHETR 62 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 L +I A+ SI+ S + ID+ NI +AT A+ A+E L IP LIDG Sbjct: 63 VLLSSEIKKQALSFSIAEISPEVIDEVNILQATFLAMNQAIEQLSPIPEFLLIDGNRFKT 122 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP V+KGDS SIAAASIIAKV RD M ++YP+YGF H GYPT H + Sbjct: 123 TLPIPFETVVKGDSKVFSIAAASIIAKVHRDNFMINLAERYPEYGFAQHFGYPTKAHIEA 182 Query: 188 IKEKGPSCIHRLTFR 202 IK G S +HR +F+ Sbjct: 183 IKMFGRSKVHRKSFK 197 >gi|218197065|gb|EEC79492.1| hypothetical protein OsI_20541 [Oryza sativa Indica Group] Length = 501 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 82/176 (46%), Positives = 108/176 (61%), Gaps = 2/176 (1%) Query: 32 VGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQY 90 VGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I + A+ S+ A Sbjct: 323 VGRGPLVGAVVTAAVILDPAQPIVGLADSKKLSEKRRLALYDEIVAKALSWSLGRAEPAE 382 Query: 91 IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAAS 150 ID+ NI AT+ A+ AV L + P LIDG P LP ++ AV+KGDS I+AAS Sbjct: 383 IDQLNILHATMLAMQRAVAGLHIAPDMVLIDGNRCP-SLPMRSQAVVKGDSRVAEISAAS 441 Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 I+AKVTRDR M ++PDYGF H GYPTA H + + G + HR +F P++ Sbjct: 442 ILAKVTRDREMAELDSEFPDYGFAQHKGYPTAFHLERLAALGATEHHRRSFAPVKR 497 >gi|229031467|ref|ZP_04187467.1| Ribonuclease [Bacillus cereus AH1271] gi|228729756|gb|EEL80736.1| Ribonuclease [Bacillus cereus AH1271] Length = 257 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 93/196 (47%), Positives = 128/196 (65%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y Sbjct: 61 RYEIALREKGLTLIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I + AI I + S Q ID+ NI++AT A+ AV NL P LID +P P Sbjct: 121 DEIKAQAIVIGVGIVSPQIIDEINIYQATKQAMLDAVANLSCAPEYLLIDAMKLPT--PI 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ Sbjct: 179 PQTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAH 238 Query: 192 GPSCIHRLTFRPLRNL 207 G HR +F P++++ Sbjct: 239 GVLEEHRKSFAPIKDM 254 >gi|152976203|ref|YP_001375720.1| ribonuclease HII [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189043565|sp|A7GRG7|RNH2_BACCN RecName: Full=Ribonuclease HII; Short=RNase HII gi|152024955|gb|ABS22725.1| Ribonuclease H [Bacillus cytotoxicus NVH 391-98] Length = 259 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 92/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +R++ + +AGIDEVGRG LAGPVV AA+IL G+NDSKK+S KRE Y+ Sbjct: 62 YENALRKQGISYIAGIDEVGRGPLAGPVVTAAVILPEEFYIPGLNDSKKLSEAKRELFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID+ NI++AT A+ AV NL P LID +P +P Sbjct: 122 EIREKAIAIGVGIVSPQVIDEMNIYQATKRAMLDAVANLSYAPEHLLIDAMKLPTSIP-- 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +++KGD+ S+SI+AASIIAKVTRDR+M+ K YP+YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIVKGDAKSISISAASIIAKVTRDRMMKELGKTYPEYGFEKHMGYGTKQHLEAIETYG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR TF P++++ Sbjct: 240 VLEEHRKTFAPIKDM 254 >gi|317052287|ref|YP_004113403.1| ribonuclease H [Desulfurispirillum indicum S5] gi|316947371|gb|ADU66847.1| Ribonuclease H [Desulfurispirillum indicum S5] Length = 201 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 82/190 (43%), Positives = 111/190 (58%), Gaps = 1/190 (0%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + R + +AG+DEVGRG LAGPV AA+IL + I DSKK+S +R L Sbjct: 5 EFDQQWRNCHTQHIAGVDEVGRGPLAGPVCAAAVILPADFSDSRIRDSKKLSALQRRTLS 64 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I S + S+++ + ID NI AT A++ A+ L + P L+DG Sbjct: 65 DLIRHSCLAWSVATVDCEVIDTINILHATRLAMWQALSQLPMTPELLLVDGMDNSFFPAV 124 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + VIKGD++SLSIAAASI+AKV RD LM ++YP YGF H GY TA+H+Q I+E Sbjct: 125 RGEKVIKGDNLSLSIAAASIVAKVHRDELMEALDQRYPQYGFARHKGYGTAQHRQAIREH 184 Query: 192 GPSCIHRLTF 201 G HR +F Sbjct: 185 GLCPQHRRSF 194 >gi|323480814|gb|ADX80253.1| ribonuclease HII [Enterococcus faecalis 62] Length = 255 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 91/196 (46%), Positives = 126/196 (64%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E +K +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KKRE LY Sbjct: 61 QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ I + A ID+ NI++AT A+ A+++L P LID + D+P Sbjct: 121 NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLIDAMQL--DVPQ 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM + YP YGF ++ GY T +H +++ Sbjct: 179 PQESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKY 238 Query: 192 GPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 239 GVTPIHRRTFAPIKDM 254 >gi|153003177|ref|YP_001377502.1| ribonuclease HII [Anaeromyxobacter sp. Fw109-5] gi|152026750|gb|ABS24518.1| Ribonuclease H [Anaeromyxobacter sp. Fw109-5] Length = 338 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 84/196 (42%), Positives = 120/196 (61%), Gaps = 2/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + + VAG+DE G LAGPVV A IL + P GI+DSK++ ++RE L Sbjct: 89 LRYEGELWDGGVTLVAGVDEAGMAPLAGPVVAGACILPRDYRPRGIDDSKQLDRRERERL 148 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 E I ++A+ +++ A + ID+ NI++A L A+ AV+ L P L+D R +PE L Sbjct: 149 AEDIKANAVCWAVARAEVEEIDRLNIYRAGLLALTRAVQALTPAPGHVLVDARKLPE-LR 207 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD++SL+IAAASI+AK TRD LM YP YGF +H GYPTA+H Q ++ Sbjct: 208 LPQTPIIHGDALSLTIAAASILAKTTRDELMGELDALYPGYGFCNHKGYPTAEHFQALER 267 Query: 191 KGPSCIHRLTFRPLRN 206 G IHR +F+P+R Sbjct: 268 LGACPIHRRSFQPVRE 283 >gi|147678043|ref|YP_001212258.1| ribonuclease HII [Pelotomaculum thermopropionicum SI] gi|189043637|sp|A5D1I3|RNH2_PELTS RecName: Full=Ribonuclease HII; Short=RNase HII gi|146274140|dbj|BAF59889.1| ribonuclease HII [Pelotomaculum thermopropionicum SI] Length = 266 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 86/201 (42%), Positives = 119/201 (59%), Gaps = 4/201 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHK 66 + + E + + PVAG+DE GRG LAGPVV AA+IL P + G+NDSKK++ Sbjct: 58 QKLYIYENSLIAQGYSPVAGVDEAGRGPLAGPVVAAAVILPPVADLALAGLNDSKKLNPS 117 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KR EL +I A+ S ++ + I NIH A+L A+ AV L++ P L+DG I Sbjct: 118 KRAELAARIKKVALAWSAGISTVEEIFNENIHAASLTAMRRAVLKLKIRPAYLLVDGYRI 177 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 L A+ GD +S S+AAASI+AKV RDRLM H +YP YGF+ H GY T +H Sbjct: 178 -SRLELPQLALTGGDGLSASVAAASILAKVLRDRLMDFYHVQYPQYGFNRHKGYATPEHL 236 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 ++ GP +HR +RP++N Sbjct: 237 AALERYGPCPLHRAGYRPVKN 257 >gi|332530821|ref|ZP_08406747.1| ribonuclease HII [Hylemonella gracilis ATCC 19624] gi|332039733|gb|EGI76133.1| ribonuclease HII [Hylemonella gracilis ATCC 19624] Length = 196 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 79/182 (43%), Positives = 116/182 (63%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82 +AG+DE GRG LAGPVV AA+ILD N G++DSKK++ +RE LY++I + A+ + Sbjct: 6 GLLAGVDEAGRGPLAGPVVAAAVILDELNPIEGLDDSKKLTAARRERLYDEIRAKALCCA 65 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 ++ AS + ID NI +ATL A+ AV L++ P L+DG +P L + AV++GD++ Sbjct: 66 VAEASVEEIDALNILQATLLAMRRAVGGLRLKPSKVLVDGNQLPR-LSVLSEAVVRGDAL 124 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKV RDR +++P YGF +H GY TA H + G HR +F Sbjct: 125 VPAISAASILAKVHRDRWCLSYDREFPQYGFAAHKGYGTAVHLAALHMHGACPQHRRSFA 184 Query: 203 PL 204 P+ Sbjct: 185 PV 186 >gi|270308093|ref|YP_003330151.1| ribonuclease HII [Dehalococcoides sp. VS] gi|270153985|gb|ACZ61823.1| ribonuclease HII [Dehalococcoides sp. VS] Length = 211 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 83/202 (41%), Positives = 112/202 (55%), Gaps = 5/202 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHK 66 P + E + ++ +AG+DE GRG LAGPVV A+I+ P + DSK ++ + Sbjct: 7 PGWAEEKQLWKQGFSSIAGLDEAGRGCLAGPVVAGAVIMPPRLKGEWVAMVRDSKVLTLE 66 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KRE LY I S AI + + ID I AT A+ AVE+L P L+D + Sbjct: 67 KREYLYCHIVSMAISFGVGVVDNTQIDCLGIAPATRLAMKQAVEHLDCRPDYLLVDYLKL 126 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P D+P ++ GD++ SIA ASIIAKV+RDRLM YP Y H GY TA H Sbjct: 127 P-DIPLPQKGIVDGDALCFSIACASIIAKVSRDRLMCELDATYPGYHLAKHKGYGTALHM 185 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 + I +KG S IHR TF PL+++ Sbjct: 186 ECISQKGISPIHRRTFAPLKSM 207 >gi|319892260|ref|YP_004149135.1| Ribonuclease HII [Staphylococcus pseudintermedius HKU10-03] gi|317161956|gb|ADV05499.1| Ribonuclease HII [Staphylococcus pseudintermedius HKU10-03] Length = 261 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 87/197 (44%), Positives = 123/197 (62%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +E E ++ + + G+DEVGRG LAGPVV +A+IL P + GINDSK++S +R L Sbjct: 63 YETE-ILNVQPEALICGVDEVGRGPLAGPVVASAVILQPGHDFVGINDSKQLSVTQRNLL 121 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + ++ A+ + ID+HNI+ AT A+Y A+ENL V P LID ++ + L Sbjct: 122 NTSLKEQVRAWAVGVATPEEIDEHNIYVATQIAMYRAIENLSVTPTHYLIDAMTL-DHLT 180 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD+ S+SIAAASIIAKV RD LM K+YP Y F + GY T KH +K+ Sbjct: 181 APQQAIIKGDAKSVSIAAASIIAKVYRDDLMAEYAKQYPGYDFAQNAGYGTQKHLDGLKQ 240 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 241 YGVTTIHRKTFEPIKSM 257 >gi|121608424|ref|YP_996231.1| ribonuclease HII [Verminephrobacter eiseniae EF01-2] gi|189043674|sp|A1WHV6|RNH2_VEREI RecName: Full=Ribonuclease HII; Short=RNase HII gi|121553064|gb|ABM57213.1| Ribonuclease H [Verminephrobacter eiseniae EF01-2] Length = 209 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 79/182 (43%), Positives = 113/182 (62%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DE GRG LAGPV+ AA++LD G+ DSKK++ +R L+++I + A+ S Sbjct: 20 GLVAGVDEAGRGPLAGPVMAAAVMLDERQPIMGLADSKKLTPARRASLFDEIRAKALCYS 79 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ AS Q ID NI +ATL A+ AV+ L++ P L+DG +P L A A++KGD++ Sbjct: 80 IAQASVQEIDALNILQATLLAMRRAVQGLRLRPALVLVDGNRLPR-LDIPAQAIVKGDAL 138 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKV RD H ++P YGF H GY TA H ++ G HR +F Sbjct: 139 QPAISAASILAKVQRDHWCVQVHAEFPQYGFAGHKGYGTAMHLAALRAHGACIHHRRSFA 198 Query: 203 PL 204 P+ Sbjct: 199 PV 200 >gi|260172441|ref|ZP_05758853.1| ribonuclease HII [Bacteroides sp. D2] gi|315920736|ref|ZP_07916976.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694611|gb|EFS31446.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 200 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 105/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI +A+ A++ AV+ L P+ LIDG + V+KGD LS Sbjct: 73 VSPEEIDEINILRASFLAMHRAVDQLSTRPQHLLIDGNRFTKYPGVPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H+++P Y +D + GYPT KH+ I E+G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTFNLL 191 >gi|298480557|ref|ZP_06998754.1| ribonuclease HII [Bacteroides sp. D22] gi|295086253|emb|CBK67776.1| RNase HII [Bacteroides xylanisolvens XB1A] gi|298273378|gb|EFI14942.1| ribonuclease HII [Bacteroides sp. D22] Length = 200 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 105/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK++S K+R L E I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLSEKQRYALREVIEKEAIAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI +A+ A++ AV+ L P+ LIDG + V+KGD LS Sbjct: 73 VSPEEIDEINILRASFLAMHRAVDQLTTRPQHLLIDGNRFTKYPDIPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H+++P Y +D + GYPT KH+ I E+G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTFNLL 191 >gi|323464643|gb|ADX76796.1| ribonuclease HII [Staphylococcus pseudintermedius ED99] Length = 261 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 87/197 (44%), Positives = 123/197 (62%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +E E ++ + + G+DEVGRG LAGPVV +A+IL P + GINDSK++S +R L Sbjct: 63 YETE-ILNVQPEALICGVDEVGRGPLAGPVVASAVILQPGHDFVGINDSKQLSVTQRNLL 121 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + ++ A+ + ID+HNI+ AT A+Y A+ENL V P LID ++ + L Sbjct: 122 NTSLKEQVRAWAVGVATPEEIDEHNIYVATQIAMYRAIENLSVTPTHYLIDAMTL-DHLT 180 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD+ S+SIAAASIIAKV RD LM K+YP Y F + GY T KH +K+ Sbjct: 181 APQQAIIKGDAKSVSIAAASIIAKVYRDDLMAEYAKQYPGYDFAQNAGYGTQKHLDGLKQ 240 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 241 YGVTTIHRKTFEPIKSM 257 >gi|59802108|ref|YP_208820.1| hypothetical protein NGO1789 [Neisseria gonorrhoeae FA 1090] gi|239997979|ref|ZP_04717903.1| ribonuclease HII [Neisseria gonorrhoeae 35/02] gi|240015043|ref|ZP_04721956.1| ribonuclease HII [Neisseria gonorrhoeae DGI18] gi|240017491|ref|ZP_04724031.1| ribonuclease HII [Neisseria gonorrhoeae FA6140] gi|240081632|ref|ZP_04726175.1| ribonuclease HII [Neisseria gonorrhoeae FA19] gi|240113913|ref|ZP_04728403.1| ribonuclease HII [Neisseria gonorrhoeae MS11] gi|240116645|ref|ZP_04730707.1| ribonuclease HII [Neisseria gonorrhoeae PID18] gi|240118868|ref|ZP_04732930.1| ribonuclease HII [Neisseria gonorrhoeae PID1] gi|240122111|ref|ZP_04735073.1| ribonuclease HII [Neisseria gonorrhoeae PID24-1] gi|240124723|ref|ZP_04737609.1| ribonuclease HII [Neisseria gonorrhoeae SK-92-679] gi|240129082|ref|ZP_04741743.1| ribonuclease HII [Neisseria gonorrhoeae SK-93-1035] gi|260439594|ref|ZP_05793410.1| ribonuclease HII [Neisseria gonorrhoeae DGI2] gi|73917827|sp|Q5F5X9|RNH2_NEIG1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|59719003|gb|AAW90408.1| putative ribonuclease HII [Neisseria gonorrhoeae FA 1090] Length = 194 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 79/182 (43%), Positives = 105/182 (57%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I A+ +++ Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKEQAVAWHVAA 65 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ++ + I NI AT+ A+ AV L P IDG IPE L A AV+KGDS + Sbjct: 66 STPEEIASLNILHATMLAMKRAVYGLAARPEKIFIDGNRIPEHLGIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M ++ P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRRPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NL 207 NL Sbjct: 186 NL 187 >gi|150003938|ref|YP_001298682.1| ribonuclease HII [Bacteroides vulgatus ATCC 8482] gi|254880820|ref|ZP_05253530.1| ribonuclease HII [Bacteroides sp. 4_3_47FAA] gi|294775094|ref|ZP_06740623.1| ribonuclease HII [Bacteroides vulgatus PC510] gi|319639832|ref|ZP_07994561.1| ribonuclease HII [Bacteroides sp. 3_1_40A] gi|166225169|sp|A6L046|RNH2_BACV8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|149932362|gb|ABR39060.1| ribonuclease HII [Bacteroides vulgatus ATCC 8482] gi|254833613|gb|EET13922.1| ribonuclease HII [Bacteroides sp. 4_3_47FAA] gi|294451138|gb|EFG19609.1| ribonuclease HII [Bacteroides vulgatus PC510] gi|317388496|gb|EFV69346.1| ribonuclease HII [Bacteroides sp. 3_1_40A] Length = 201 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 106/179 (59%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ +R L E + A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPVDFKNELLNDSKQLTEHQRYALREIVEREALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI A+ A++ AV+ L++ P+ LIDG + V+KGD LS Sbjct: 73 VTPEEIDEINILNASFLAMHRAVDQLKIRPQHLLIDGNRFKKYQDLPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M HK+YP Y ++S+ GYPT KH+ I+E G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNELHKEYPFYDWNSNKGYPTKKHRAAIREHGTTPYHRMTFNLL 191 >gi|150010125|ref|YP_001304868.1| ribonuclease HII [Parabacteroides distasonis ATCC 8503] gi|255012614|ref|ZP_05284740.1| ribonuclease HII [Bacteroides sp. 2_1_7] gi|256838948|ref|ZP_05544458.1| ribonuclease HII [Parabacteroides sp. D13] gi|298374495|ref|ZP_06984453.1| ribonuclease HII [Bacteroides sp. 3_1_19] gi|301308175|ref|ZP_07214129.1| ribonuclease HII [Bacteroides sp. 20_3] gi|166226634|sp|A6LHT2|RNH2_PARD8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|149938549|gb|ABR45246.1| ribonuclease HII [Parabacteroides distasonis ATCC 8503] gi|256739867|gb|EEU53191.1| ribonuclease HII [Parabacteroides sp. D13] gi|298268863|gb|EFI10518.1| ribonuclease HII [Bacteroides sp. 3_1_19] gi|300833645|gb|EFK64261.1| ribonuclease HII [Bacteroides sp. 20_3] Length = 199 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 78/185 (42%), Positives = 103/185 (55%), Gaps = 2/185 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK++S KKR +L I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVFAAAVILPEDFKNEDLNDSKQLSEKKRYKLRPVIEREAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NI KA+ A++ A+E L+V P LIDG V+KGD LS Sbjct: 73 VSPEEIDKINILKASFLAMHRAIEQLKVRPEHLLIDGNRFTPYPDIPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL- 204 IAAASI+AK RD M +YP Y + + GYPT H++ I+ G + HR TF L Sbjct: 133 IAAASILAKTYRDDYMNELALEYPAYHWLDNKGYPTKVHREAIRTHGITPYHRKTFTLLP 192 Query: 205 RNLSV 209 L++ Sbjct: 193 EQLTL 197 >gi|301063461|ref|ZP_07203993.1| ribonuclease HII [delta proteobacterium NaphS2] gi|300442400|gb|EFK06633.1| ribonuclease HII [delta proteobacterium NaphS2] Length = 215 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 85/208 (40%), Positives = 120/208 (57%), Gaps = 4/208 (1%) Query: 1 MFCNSIPERPH--FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN 58 +F N + + P F E R +AG+DE GRG LAGPVV AA+++ GI Sbjct: 9 LFPNDLSQCPQDPFYHETQARNSGYRLIAGVDEAGRGPLAGPVVAAAVMIPDGVRFSGIK 68 Query: 59 DSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117 DSKK++ + R E + +I A+ I S YI++ NI A+L+A+ AV+ L P Sbjct: 69 DSKKMTVRARIEAFHRIEGGALTFGIGVVSVSYIEEFNILNASLEAMLRAVQVLDPQPEM 128 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 L+DG + + KGD +S SI+AAS++AKV RDR+M H YP+YGFD + Sbjct: 129 ILVDGIHTVPT-SIKQKCLKKGDQVSRSISAASVLAKVYRDRIMAAYHHMYPEYGFDKNK 187 Query: 178 GYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 GY T +H + IKE GP +HRLTF+ +R Sbjct: 188 GYGTRQHLEAIKEHGPCPVHRLTFKGVR 215 >gi|119505680|ref|ZP_01627750.1| Ribonuclease H [marine gamma proteobacterium HTCC2080] gi|119458492|gb|EAW39597.1| Ribonuclease H [marine gamma proteobacterium HTCC2080] Length = 199 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 79/186 (42%), Positives = 114/186 (61%), Gaps = 3/186 (1%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-II 81 +AG+DEVGRG LAG VV AA+I +++P G+ DSKK++ K+RE+L I SSA Sbjct: 14 YERIAGVDEVGRGPLAGDVVAAAVIFG-DSVPAGVTDSKKLTAKRREQLAVAIKSSARAW 72 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 ++ AS ID NI +A+L A++ AV+ L + P L+DG +P ++ +I GD+ Sbjct: 73 CVARASVAEIDSLNILQASLLAMHRAVDGLSLAPEFVLVDGNRLP-SWNYKSKPIIGGDA 131 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + +SI AASI+AKV RD M +YP YGF H GYPT +H + G + HR +F Sbjct: 132 LEVSIGAASILAKVQRDAEMVALDDEYPGYGFARHKGYPTREHMAALAALGVTPWHRKSF 191 Query: 202 RPLRNL 207 P++ L Sbjct: 192 APVKRL 197 >gi|134296014|ref|YP_001119749.1| ribonuclease HII [Burkholderia vietnamiensis G4] gi|166225178|sp|A4JF61|RNH2_BURVG RecName: Full=Ribonuclease HII; Short=RNase HII gi|134139171|gb|ABO54914.1| Ribonuclease H [Burkholderia vietnamiensis G4] Length = 216 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 89/182 (48%), Positives = 119/182 (65%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LY+ I + + + Sbjct: 29 IVCGVDEAGRGPLAGPVVAAAVILDPAQPIEGLDDSKALSAKKRDALYDLIVARSRAYCV 88 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS ID NI AT+ A+ AVE L ++P A IDG P L +A A++ GD++ Sbjct: 89 ASASVDEIDTLNILHATMLAMKRAVEGLSLMPTLAQIDGNRCPT-LMVRAEAIVSGDALV 147 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H ++P YGFD H GY TAKH ++E GP HR +F P Sbjct: 148 PSISAASILAKVTRDRMLVELHARHPVYGFDVHAGYGTAKHLAALREHGPCEAHRRSFAP 207 Query: 204 LR 205 +R Sbjct: 208 VR 209 >gi|224025200|ref|ZP_03643566.1| hypothetical protein BACCOPRO_01934 [Bacteroides coprophilus DSM 18228] gi|224018436|gb|EEF76434.1| hypothetical protein BACCOPRO_01934 [Bacteroides coprophilus DSM 18228] Length = 200 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 71/176 (40%), Positives = 105/176 (59%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSKK++ K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPHDFRNELLNDSKKLTEKQRYALREVIEREALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI A+ A++ A++ L++ P+ LIDG + ++KGD LS Sbjct: 73 VTPEEIDRINILNASFLAMHRAIDQLKIRPQHLLIDGNRFNKYADIPHTTIVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M ++YP Y + S+ GYPT KH++ IK+ G + HR++F Sbjct: 133 IAAASILAKTYRDDYMNRLAEEYPAYDWKSNKGYPTVKHREAIKKWGVTPYHRMSF 188 >gi|331085160|ref|ZP_08334246.1| hypothetical protein HMPREF0987_00549 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407943|gb|EGG87433.1| hypothetical protein HMPREF0987_00549 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 254 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 86/183 (46%), Positives = 117/183 (63%), Gaps = 2/183 (1%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 ++ + GIDEVGRG LAGPVV A+IL ++ +NDSKK++ K+REELYE I A+ Sbjct: 67 RDAAFICGIDEVGRGPLAGPVVAGAVILPKDSQILYLNDSKKLTEKRREELYEVIMREAV 126 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ-AFAVIK 138 + I S ID+ NI +AT +A++ AV L V P L D +IP P +IK Sbjct: 127 AVGIGIVSPARIDEINILQATYEAMWEAVGKLCVEPNVLLNDAVTIPMIPPHIVQVPIIK 186 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD+ S+SIAAASI+AKVTRDRLM + P YGF S+ GY +++H +K+ GP+ IHR Sbjct: 187 GDAKSVSIAAASIVAKVTRDRLMTEYEEVLPGYGFASNKGYGSSEHIAALKKYGPTPIHR 246 Query: 199 LTF 201 +F Sbjct: 247 RSF 249 >gi|255692962|ref|ZP_05416637.1| ribonuclease HII [Bacteroides finegoldii DSM 17565] gi|260621273|gb|EEX44144.1| ribonuclease HII [Bacteroides finegoldii DSM 17565] Length = 200 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 106/179 (59%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPGDFKNELLNDSKQLTEKQRYALREVIQREAVAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI +A+ A++ AV+ L + P+ LIDG + ++KGD LS Sbjct: 73 VSPEEIDELNILRASFLAMHRAVDQLAIRPQHLLIDGNRFNKYPGIPHTTIVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H+++P Y +D + GYPT KH+ I E+G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTFNLL 191 >gi|226313196|ref|YP_002773090.1| ribonuclease HII [Brevibacillus brevis NBRC 100599] gi|226096144|dbj|BAH44586.1| ribonuclease HII [Brevibacillus brevis NBRC 100599] Length = 258 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 83/194 (42%), Positives = 109/194 (56%), Gaps = 2/194 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + +K + GIDEVGRG LAGPVV A+ L + G+NDSKKI RE E Sbjct: 64 YEKAMFDKGHQYIFGIDEVGRGPLAGPVVACAVCLPKDFYLPGLNDSKKIPVSTREAFCE 123 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I A+ + I ID NI AT +A+ A++ + P LID + + C+ Sbjct: 124 IIQRDALAVGIGIVDAARIDAINILAATKEAMKLAIQQASIAPDVLLIDAVQL-TGMNCE 182 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +I GD+ S+SIAAASI+AKVTRDRLM ++YP YGFD H GY T +H I G Sbjct: 183 QVPIIGGDAKSVSIAAASIVAKVTRDRLMAQYAEEYPAYGFDKHAGYGTPEHLAAISRFG 242 Query: 193 PSCIHRLTFRPLRN 206 P+ IHR TF ++ Sbjct: 243 PTPIHRKTFTGVKE 256 >gi|329118448|ref|ZP_08247154.1| ribonuclease HII [Neisseria bacilliformis ATCC BAA-1200] gi|327465494|gb|EGF11773.1| ribonuclease HII [Neisseria bacilliformis ATCC BAA-1200] Length = 198 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 79/182 (43%), Positives = 109/182 (59%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG LAG V AA+IL + G+ DSKK+S KKR+ L +I + A+ S++ Sbjct: 7 AGVDEAGRGPLAGSVFAAAVILPEHYDLPGLADSKKLSEKKRDALAAQIKAQAVAWSVAE 66 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A I + NI A + A+ AVENL V P+ LIDG IP+ LP A A++KGD+ + Sbjct: 67 AGVDEIARLNILHAAMLAMRRAVENLAVPPQRILIDGNRIPDGLPAPAEAIVKGDAKIPA 126 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AK RD M ++P YGF+ H GY T +H ++ G HR F P+R Sbjct: 127 ISAASILAKTARDAQMYALAARHPQYGFERHKGYGTPEHLAALRRHGALPEHRRGFAPVR 186 Query: 206 NL 207 + Sbjct: 187 EI 188 >gi|77165488|ref|YP_344013.1| ribonuclease H [Nitrosococcus oceani ATCC 19707] gi|254433570|ref|ZP_05047078.1| ribonuclease HII [Nitrosococcus oceani AFC27] gi|97189090|sp|Q3J9L3|RNH2_NITOC RecName: Full=Ribonuclease HII; Short=RNase HII gi|76883802|gb|ABA58483.1| RNase HII [Nitrosococcus oceani ATCC 19707] gi|207089903|gb|EDZ67174.1| ribonuclease HII [Nitrosococcus oceani AFC27] Length = 201 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 81/185 (43%), Positives = 110/185 (59%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG LAGPV+ A+ILDP G+ DSK+++ RE L I + A+ + Sbjct: 15 QRVAGVDEVGRGPLAGPVIAGAVILDPECPISGVKDSKQLTAPARERLAALIQAQAVAWA 74 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI +A+L A+ A+ L V+P L+DG+ P + C A++KGD Sbjct: 75 LGRAEAAEIDQFNILQASLLAMERAISALSVVPDLVLVDGKHCPPTV-CPVRAIVKGDQQ 133 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 ++I AASI+AKV RD M + YP YGF H GYPT H +K GP IHR +FR Sbjct: 134 IMAIGAASIVAKVARDAEMIAFEESYPGYGFGIHKGYPTRAHLAALKALGPCSIHRRSFR 193 Query: 203 PLRNL 207 P+R Sbjct: 194 PVRRF 198 >gi|262375455|ref|ZP_06068688.1| ribonuclease HII [Acinetobacter lwoffii SH145] gi|262309709|gb|EEY90839.1| ribonuclease HII [Acinetobacter lwoffii SH145] Length = 195 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 83/183 (45%), Positives = 114/183 (62%), Gaps = 1/183 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 +AG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A+ + Sbjct: 3 IAGVDEAGRGPLVGSVVAAAVILDPNNPIEGLNDSKKLTEKKREKLFIEIQEKALAWAIA 62 Query: 86 ASHQYI-DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + D+HNI +A+L A+ AVE L V P L+DG IP+ L AV+ GD++ Sbjct: 63 EASAAEIDEHNILQASLLAMRRAVEALPVQPEHVLVDGNKIPQGLAMSCDAVVGGDALHA 122 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +K+P +GF H GYPT H + I G HR +F P+ Sbjct: 123 EISAASILAKVTRDHQMIEMDQKHPQFGFAKHKGYPTKAHFEAIALHGVIDEHRRSFGPV 182 Query: 205 RNL 207 + + Sbjct: 183 KKV 185 >gi|319793969|ref|YP_004155609.1| ribonuclease h [Variovorax paradoxus EPS] gi|315596432|gb|ADU37498.1| Ribonuclease H [Variovorax paradoxus EPS] Length = 238 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 82/182 (45%), Positives = 118/182 (64%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82 +AG+DE GRG LAGPVV AA+ILD G+ DSK ++ +RE L+++I + A+ S Sbjct: 20 GLLAGVDEAGRGPLAGPVVAAAVILDDTRPIRGLADSKTLTALQRERLHDQILAKALCCS 79 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ AS + ID HNI +AT+ A+ AVE L++ P L+DG +P L A AV+KGD++ Sbjct: 80 IAQASVEEIDTHNILQATMIAMRRAVEGLRLKPAKVLVDGNRLPT-LDVLAEAVVKGDAL 138 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKV RDRL H ++P YGF H GY T +H + +++ G HR +F Sbjct: 139 VKAISAASILAKVHRDRLCEQLHTEFPHYGFAGHKGYGTPEHLEALQKHGACVHHRRSFS 198 Query: 203 PL 204 P+ Sbjct: 199 PV 200 >gi|313884900|ref|ZP_07818652.1| ribonuclease HII [Eremococcus coleocola ACS-139-V-Col8] gi|312619591|gb|EFR31028.1| ribonuclease HII [Eremococcus coleocola ACS-139-V-Col8] Length = 279 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 87/197 (44%), Positives = 121/197 (61%), Gaps = 5/197 (2%) Query: 14 LEAMVRE-KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREEL 71 E + + ++ +AGIDEVGRG LAGPVV AA+IL + F GINDSK++SH++R Sbjct: 78 YENDLWQNQSFKYIAGIDEVGRGPLAGPVVTAAVILPQDCAAFIGINDSKQLSHQQRVSY 137 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 E I +A+ SI+ S Q ID+ NI++AT + AV NL + P L+D I +P Sbjct: 138 AEIIKENALAYSIAIGSAQLIDQVNIYQATRQMMVKAVANLAIQPDYLLLDAMQIESSIP 197 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD SLSIAAASIIAKV RD++M ++P Y F + GY T H + E Sbjct: 198 --QRSIIKGDQKSLSIAAASIIAKVYRDQIMDQYALEFPYYDFQHNKGYGTQNHLAGLNE 255 Query: 191 KGPSCIHRLTFRPLRNL 207 G S IHR +F P++++ Sbjct: 256 FGYSPIHRRSFEPVKSM 272 >gi|90415807|ref|ZP_01223740.1| Ribonuclease HII (RNase HII) [marine gamma proteobacterium HTCC2207] gi|90332181|gb|EAS47378.1| Ribonuclease HII (RNase HII) [marine gamma proteobacterium HTCC2207] Length = 204 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 83/186 (44%), Positives = 112/186 (60%), Gaps = 2/186 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 N+ +AG+DEVGRG LAG VV AA+IL N+ G+ DSK +S ++RE LY ITS A+ Sbjct: 9 NIKFLAGVDEVGRGPLAGDVVTAAVILPANHGIEGLADSKALSSRQRENLYADITSRALC 68 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 S++ S ID+ NI +ATL A+ AV L P +DG +P+ + AV+KGD Sbjct: 69 WSVARCSVAEIDRFNILQATLMAMRRAVMGLSQQPDYVAVDGNRLPQ-WEYRGEAVVKGD 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 I+AASIIAKV RD M+ YP YGF ++ GY T +H + + G + IHR T Sbjct: 128 GRVECISAASIIAKVVRDAEMKAFDITYPGYGFAANKGYGTPQHLEALSRIGATPIHRRT 187 Query: 201 FRPLRN 206 F P+R Sbjct: 188 FAPVRE 193 >gi|57234417|ref|YP_181512.1| ribonuclease HII [Dehalococcoides ethenogenes 195] gi|97182406|sp|Q3Z8D7|RNH2_DEHE1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|57224865|gb|AAW39922.1| ribonuclease HII [Dehalococcoides ethenogenes 195] Length = 211 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 83/202 (41%), Positives = 113/202 (55%), Gaps = 5/202 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHK 66 P + E + ++ +AG+DE GRG LAGPVV A+I+ P + + DSK ++ + Sbjct: 7 PGWAEEKHLWKQGFSSIAGLDEAGRGCLAGPVVAGAVIMPPRLKGDWVAMVRDSKVLTPE 66 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KRE LY I S AI + + ID I AT A+ AVE+L P L+D + Sbjct: 67 KREYLYCHIVSMAISFGVGVVDNTQIDCLGIAPATRLAMKQAVEHLDCRPDFLLVDYLKL 126 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P D+P ++ GD++ SIA ASIIAKV+RDRLM YP Y H GY TA H Sbjct: 127 P-DIPLPQKGIVDGDALCFSIACASIIAKVSRDRLMCELEATYPGYHLAKHKGYGTALHM 185 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 + I +KG S IHR TF PL+++ Sbjct: 186 ECISQKGISPIHRRTFAPLKSM 207 >gi|53711581|ref|YP_097573.1| ribonuclease HII [Bacteroides fragilis YCH46] gi|81383847|sp|Q64ZN7|RNH2_BACFR RecName: Full=Ribonuclease HII; Short=RNase HII gi|52214446|dbj|BAD47039.1| ribonuclease HII [Bacteroides fragilis YCH46] Length = 201 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 103/179 (57%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK++S K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFENELLNDSKQLSEKQRYALREVIERDAVAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NI A+ A++ AV+ L+ P+ LIDG + VIKGD LS Sbjct: 73 VSPEEIDKINILNASFLAMHRAVDRLKTRPQHLLIDGNRFKKYPDIPHTTVIKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H+++P Y ++ + GYPT KH+ I G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNRLHQEFPCYDWEHNKGYPTKKHRAAIAGHGTTPYHRMTFNLL 191 >gi|160883918|ref|ZP_02064921.1| hypothetical protein BACOVA_01892 [Bacteroides ovatus ATCC 8483] gi|237720405|ref|ZP_04550886.1| ribonuclease HII [Bacteroides sp. 2_2_4] gi|156110648|gb|EDO12393.1| hypothetical protein BACOVA_01892 [Bacteroides ovatus ATCC 8483] gi|229450156|gb|EEO55947.1| ribonuclease HII [Bacteroides sp. 2_2_4] Length = 200 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 105/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI +A+ A++ AV+ L P+ LIDG + V+KGD LS Sbjct: 73 VSPEEIDEINILRASFLAMHRAVDQLTTRPQHLLIDGNRFTKYPGVPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H+++P Y +D + GYPT KH+ I E+G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTFNLL 191 >gi|83313088|ref|YP_423352.1| ribonuclease HII [Magnetospirillum magneticum AMB-1] gi|11387098|sp|Q50412|RNH2_MAGMM RecName: Full=Ribonuclease HII; Short=RNase HII gi|1054584|dbj|BAA06983.1| unnamed protein product [Magnetospirillum magneticum AMB-1] gi|82947929|dbj|BAE52793.1| Ribonuclease HII [Magnetospirillum magneticum AMB-1] Length = 201 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 88/200 (44%), Positives = 121/200 (60%), Gaps = 9/200 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKIS 64 P LE + V GIDEVGRG LAGPVV AA+ILDP +P ++DSKK+S Sbjct: 1 MPDLALEFEIG----GIVCGIDEVGRGPLAGPVVAAAVILDPARLPKTLLERLDDSKKLS 56 Query: 65 HKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 + REEL E + ++AI+ AS + ID+ NI +AT A+ A + L AL+DG Sbjct: 57 KRNREELAELVPATAILGFGEASVEEIDRINILQATFLAMRRAYDALGRECAHALVDGNR 116 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 P LPC V+ GD ISLSIAAAS++AKV RD +M + +P++G++ + GY TA+H Sbjct: 117 -PPGLPCPVRCVVGGDGISLSIAAASVVAKVRRDAMMADLARAHPEFGWERNAGYGTAEH 175 Query: 185 QQVIKEKGPSCIHRLTFRPL 204 +K GP+ HR +F P+ Sbjct: 176 LDALKRLGPTPHHRRSFAPV 195 >gi|30263840|ref|NP_846217.1| ribonuclease HII [Bacillus anthracis str. Ames] gi|47529265|ref|YP_020614.1| ribonuclease HII [Bacillus anthracis str. 'Ames Ancestor'] gi|49186687|ref|YP_029939.1| ribonuclease HII [Bacillus anthracis str. Sterne] gi|65321164|ref|ZP_00394123.1| COG0164: Ribonuclease HII [Bacillus anthracis str. A2012] gi|167642027|ref|ZP_02400257.1| ribonuclease HII [Bacillus anthracis str. A0193] gi|170689655|ref|ZP_02880835.1| ribonuclease HII [Bacillus anthracis str. A0465] gi|170709356|ref|ZP_02899770.1| ribonuclease HII [Bacillus anthracis str. A0389] gi|177655996|ref|ZP_02937123.1| ribonuclease HII [Bacillus anthracis str. A0174] gi|227813255|ref|YP_002813264.1| ribonuclease HII [Bacillus anthracis str. CDC 684] gi|229600963|ref|YP_002868074.1| ribonuclease HII [Bacillus anthracis str. A0248] gi|254683456|ref|ZP_05147316.1| ribonuclease HII [Bacillus anthracis str. CNEVA-9066] gi|254721977|ref|ZP_05183766.1| ribonuclease HII [Bacillus anthracis str. A1055] gi|254735875|ref|ZP_05193581.1| ribonuclease HII [Bacillus anthracis str. Western North America USA6153] gi|254759311|ref|ZP_05211336.1| ribonuclease HII [Bacillus anthracis str. Australia 94] gi|39932347|sp|Q81WJ9|RNH2_BACAN RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807964|sp|C3P5N8|RNH2_BACAA RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807965|sp|C3L790|RNH2_BACAC RecName: Full=Ribonuclease HII; Short=RNase HII gi|30258484|gb|AAP27703.1| ribonuclease HII [Bacillus anthracis str. Ames] gi|47504413|gb|AAT33089.1| ribonuclease HII [Bacillus anthracis str. 'Ames Ancestor'] gi|49180614|gb|AAT55990.1| ribonuclease HII [Bacillus anthracis str. Sterne] gi|167510007|gb|EDR85423.1| ribonuclease HII [Bacillus anthracis str. A0193] gi|170125730|gb|EDS94643.1| ribonuclease HII [Bacillus anthracis str. A0389] gi|170666379|gb|EDT17162.1| ribonuclease HII [Bacillus anthracis str. A0465] gi|172079895|gb|EDT65003.1| ribonuclease HII [Bacillus anthracis str. A0174] gi|227003723|gb|ACP13466.1| ribonuclease HII [Bacillus anthracis str. CDC 684] gi|229265371|gb|ACQ47008.1| ribonuclease HII [Bacillus anthracis str. A0248] Length = 257 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KRE Y Sbjct: 62 YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYG 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ A+ NL P LID +P P Sbjct: 122 EIKAKAIAIGVGIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPA--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|302384139|ref|YP_003819962.1| ribonuclease H [Brevundimonas subvibrioides ATCC 15264] gi|302194767|gb|ADL02339.1| Ribonuclease H [Brevundimonas subvibrioides ATCC 15264] Length = 213 Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 117/199 (58%), Gaps = 2/199 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P LE ++ + V G+DE GRG AGPV AA+IL+ +++P GI+DSK ++ +RE Sbjct: 13 PTMALETLLASRVGGRVCGVDEAGRGPWAGPVSAAAVILNADDLPVGIDDSKALTAARRE 72 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L +I + A+ + AS + ID NI AT A+ A+E L V P +AL+DG Sbjct: 73 ALEIEIKARAVAWGVGFASVEEIDALNILHATGLAMCRAIEALSVSPVAALVDGN-YRFR 131 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LPC V+ GD +SLSIAAASI+AK RDRLM YP YGF H GY H Q + Sbjct: 132 LPCDVETVVGGDGLSLSIAAASILAKTARDRLMIEMDDLYPGYGFAGHKGYNAPVHSQAL 191 Query: 189 KEKGPSCIHRLTFRPLRNL 207 + GP IHR T+ P+R L Sbjct: 192 QTMGPCPIHRRTWAPIRAL 210 >gi|60679832|ref|YP_209976.1| ribonuclease HII [Bacteroides fragilis NCTC 9343] gi|253564368|ref|ZP_04841825.1| ribonuclease HII [Bacteroides sp. 3_2_5] gi|265764964|ref|ZP_06093239.1| ribonuclease HII [Bacteroides sp. 2_1_16] gi|81317095|sp|Q5LIL2|RNH2_BACFN RecName: Full=Ribonuclease HII; Short=RNase HII gi|60491266|emb|CAH06014.1| putative ribonuclease HII [Bacteroides fragilis NCTC 9343] gi|251948144|gb|EES88426.1| ribonuclease HII [Bacteroides sp. 3_2_5] gi|263254348|gb|EEZ25782.1| ribonuclease HII [Bacteroides sp. 2_1_16] gi|301161352|emb|CBW20892.1| putative ribonuclease HII [Bacteroides fragilis 638R] Length = 201 Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 103/179 (57%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK++S K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFENELLNDSKQLSEKQRYALREVIERDAVAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NI A+ A++ AV+ L+ P+ LIDG + VIKGD LS Sbjct: 73 VSPEEIDKINILNASFLAMHRAVDRLKTRPQHLLIDGNRFKKYPDIPHTTVIKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H+++P Y ++ + GYPT KH+ I G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNKLHQEFPCYDWEHNKGYPTKKHRAAIAGHGTTPYHRMTFNLL 191 >gi|218904966|ref|YP_002452800.1| ribonuclease HII [Bacillus cereus AH820] gi|226736812|sp|B7JJB6|RNH2_BACC0 RecName: Full=Ribonuclease HII; Short=RNase HII gi|218537806|gb|ACK90204.1| ribonuclease HII [Bacillus cereus AH820] Length = 257 Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KRE Y Sbjct: 62 YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYG 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ A+ NL P LID +P P Sbjct: 122 EIKAKAIAIGVXIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|294789420|ref|ZP_06754657.1| ribonuclease HII [Simonsiella muelleri ATCC 29453] gi|294482633|gb|EFG30323.1| ribonuclease HII [Simonsiella muelleri ATCC 29453] Length = 201 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 81/182 (44%), Positives = 105/182 (57%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL + + DSKK+S KKR++L E I + AI SI+S Sbjct: 11 AGVDEAGRGPLVGSVFAAAVILPAHYDLPDLTDSKKLSEKKRDKLAELIKNQAIAWSIAS 70 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS I ++NI AT+ A+ AV L P IDG +P +L A AV+KGDS Sbjct: 71 ASPAEIVQYNILYATMLAMKRAVLGLNQKPEKVWIDGNRVPPELGIDAQAVVKGDSKIAQ 130 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AK RD M YP YGF+ H GY TA H +++ G HR F P++ Sbjct: 131 ISAASILAKTARDAEMYALATLYPQYGFEKHKGYGTAAHLAALRQYGVLPEHRADFSPVK 190 Query: 206 NL 207 L Sbjct: 191 AL 192 >gi|56478865|ref|YP_160454.1| ribonuclease HII [Aromatoleum aromaticum EbN1] gi|81356536|sp|Q5NZG1|RNH2_AZOSE RecName: Full=Ribonuclease HII; Short=RNase HII gi|56314908|emb|CAI09553.1| Ribonuclease HII [Aromatoleum aromaticum EbN1] Length = 204 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 81/186 (43%), Positives = 109/186 (58%), Gaps = 2/186 (1%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81 + + G+DE GRG LAG VV AA+ILDP G+NDSKK++ + RE L I AI Sbjct: 7 IGLICGVDEAGRGPLAGSVVAAAVILDPARPIDGLNDSKKLTERARERLAPLIRERAIAW 66 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 +++ AS + ID+ NI AT+ A+ AV L +P +DG P L A AV++GD+ Sbjct: 67 AVAEASVEEIDRLNILHATMLAMQRAVAALGCVPDLVRVDGNRCPP-LAVPAEAVVRGDA 125 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +IAAASI+AK RD M +YP YGF SH GYPT +H ++ G HR +F Sbjct: 126 TVPAIAAASILAKTVRDAQMIALDGEYPAYGFASHKGYPTPEHFIALRRHGVVACHRRSF 185 Query: 202 RPLRNL 207 P+R L Sbjct: 186 APVREL 191 >gi|332994191|gb|AEF04246.1| ribonuclease HII [Alteromonas sp. SN2] Length = 191 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 112/184 (60%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK+S KKR L +I + A+ I Sbjct: 4 LIAGVDEVGRGPLVGDVVTAAVILDPANPIVGLTDSKKLSEKKRIALAAEIKAKALYWHI 63 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A+ + ID NI AT+ A+ AVE L V P +DG +P D P A AV+KGDS+ Sbjct: 64 GRATPEEIDTLNILHATMLAMKRAVEGLAVTPDFVRVDGNRLP-DWPYAAEAVVKGDSLY 122 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASIIAKV RD M + +P+YGF H GYPT H + + G +R +F+P Sbjct: 123 AEISAASIIAKVERDNDMLALDELHPEYGFAGHKGYPTKAHFEALATHGVIDGYRKSFKP 182 Query: 204 LRNL 207 ++ L Sbjct: 183 VKAL 186 >gi|254374688|ref|ZP_04990169.1| ribonuclease H [Francisella novicida GA99-3548] gi|151572407|gb|EDN38061.1| ribonuclease H [Francisella novicida GA99-3548] Length = 187 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 80/185 (43%), Positives = 116/185 (62%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 + GIDE GRG L+GPVV A +ILD + I G+ DSKK++ KKR+ LY++I + A + Sbjct: 1 MIILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYT 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I S Q ID+ NI +ATL A++ NL+ L+DG +P + + A++KGDS Sbjct: 61 IVEISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWNYNSEAIVKGDSK 119 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 + I+AASI+AKV RD + + YP YGF H GYPT +H + IK+ G IHR +++ Sbjct: 120 IIEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYK 179 Query: 203 PLRNL 207 P++ L Sbjct: 180 PVQML 184 >gi|189043611|sp|A7H722|RNH2_ANADF RecName: Full=Ribonuclease HII; Short=RNase HII Length = 315 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 84/196 (42%), Positives = 120/196 (61%), Gaps = 2/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + + VAG+DE G LAGPVV A IL + P GI+DSK++ ++RE L Sbjct: 66 LRYEGELWDGGVTLVAGVDEAGMAPLAGPVVAGACILPRDYRPRGIDDSKQLDRRERERL 125 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 E I ++A+ +++ A + ID+ NI++A L A+ AV+ L P L+D R +PE L Sbjct: 126 AEDIKANAVCWAVARAEVEEIDRLNIYRAGLLALTRAVQALTPAPGHVLVDARKLPE-LR 184 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD++SL+IAAASI+AK TRD LM YP YGF +H GYPTA+H Q ++ Sbjct: 185 LPQTPIIHGDALSLTIAAASILAKTTRDELMGELDALYPGYGFCNHKGYPTAEHFQALER 244 Query: 191 KGPSCIHRLTFRPLRN 206 G IHR +F+P+R Sbjct: 245 LGACPIHRRSFQPVRE 260 >gi|227872391|ref|ZP_03990738.1| ribonuclease H [Oribacterium sinus F0268] gi|227841751|gb|EEJ52034.1| ribonuclease H [Oribacterium sinus F0268] Length = 217 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 87/204 (42%), Positives = 124/204 (60%), Gaps = 10/204 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + ++LE N+ +AG+DE GRG LAGPVV A IL +++ + +NDSKK++ K+R Sbjct: 14 KEMWKLEEE--HANLTFIAGVDEAGRGPLAGPVVAATAILPKDHLFYYLNDSKKMTEKRR 71 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVE----NLQVIPRSALIDGR 123 E L+ +I +AI I S + ID+ NI +AT +A+ A+E N +IP L D Sbjct: 72 EALFLEIKENAIAYGIGIVSPERIDEINILQATYEAMRLAIEEMEKNFSIIPSLLLNDAV 131 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 IP + ++ GD+ SLSIAAAS++AKV+RD LM K+YP+YGF+ H GY T Sbjct: 132 RIPM-VDIPQIPIVHGDAKSLSIAAASVLAKVSRDHLMLDYAKEYPEYGFEKHKGYGTKA 190 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H + I E GP IHR +F L+ L Sbjct: 191 HTEAILEYGPCPIHRRSF--LKKL 212 >gi|315498150|ref|YP_004086954.1| ribonuclease h [Asticcacaulis excentricus CB 48] gi|315416162|gb|ADU12803.1| Ribonuclease H [Asticcacaulis excentricus CB 48] Length = 207 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 95/200 (47%), Positives = 118/200 (59%), Gaps = 6/200 (3%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 P F E+ V G+DE GRG AGP+ VAA+ILDP IP GI DSKK+S K+R Sbjct: 1 MPDFTFESQFD----GLVCGVDEAGRGPCAGPLCVAAVILDPARIPPGIADSKKLSEKQR 56 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 L I ++A+ S+ S ID HNI +AT+ + HAVE L P ALIDG P Sbjct: 57 FALEPDIKAAALAWSVIEISAADIDCHNILRATMMGMTHAVEALSPQPIHALIDGNRCPP 116 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L A AV+KGD SLSIAAASI+AK RDR+M YP YGF SH GY H Sbjct: 117 -LAIPATAVVKGDDKSLSIAAASILAKTARDRIMIEMDALYPIYGFKSHKGYQAEAHIAA 175 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 I+ GPS IHR+++ +R++ Sbjct: 176 IRLHGPSPIHRMSWATVRSV 195 >gi|293370450|ref|ZP_06617003.1| ribonuclease HII [Bacteroides ovatus SD CMC 3f] gi|292634442|gb|EFF52978.1| ribonuclease HII [Bacteroides ovatus SD CMC 3f] Length = 200 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 104/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK++S K+R L E I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLSEKQRYALREVIEKEAIAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI +A+ A++ AV+ L P+ LIDG + V+KGD LS Sbjct: 73 VSPEEIDEINILRASFLAMHRAVDQLTTRPQHLLIDGNRFTKYPDIPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H ++P Y +D + GYPT KH+ I E+G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNRLHDEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTFNLL 191 >gi|325661112|ref|ZP_08149739.1| hypothetical protein HMPREF0490_00472 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472619|gb|EGC75830.1| hypothetical protein HMPREF0490_00472 [Lachnospiraceae bacterium 4_1_37FAA] Length = 254 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 87/183 (47%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 ++ + GIDEVGRG LAGPVV A+IL ++ +NDSKK++ K+REELYE I AI Sbjct: 67 RDAAFICGIDEVGRGPLAGPVVAGAVILPKDSQILYLNDSKKLTEKRREELYEVIMREAI 126 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ-AFAVIK 138 + I S ID+ NI +AT +A+ AV L V P L D +IP P +IK Sbjct: 127 AVGIGIVSPARIDEINILQATYEAMREAVGKLCVEPNVLLNDAVTIPMIPPHIVQVPIIK 186 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD+ S+SIAAASI+AKVTRDRLM + P YGF S+ GY +++H +K+ GP+ IHR Sbjct: 187 GDAKSVSIAAASIVAKVTRDRLMTEYEEVLPGYGFASNKGYGSSEHIAALKKYGPTPIHR 246 Query: 199 LTF 201 +F Sbjct: 247 RSF 249 >gi|222054591|ref|YP_002536953.1| Ribonuclease H [Geobacter sp. FRC-32] gi|254807978|sp|B9M597|RNH2_GEOSF RecName: Full=Ribonuclease HII; Short=RNase HII gi|221563880|gb|ACM19852.1| Ribonuclease H [Geobacter sp. FRC-32] Length = 216 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 86/201 (42%), Positives = 121/201 (60%), Gaps = 3/201 (1%) Query: 8 ERPHF-ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E+P E ++MVR + +AG+DE GRG LAGPVV AA+IL ++DSKK++ Sbjct: 10 EKPTLLEFDSMVRCQGYASLAGVDEAGRGPLAGPVVAAAVILPAGIGLSEVDDSKKLTSG 69 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KR+EL+E I ++A+ + + + ID+ NI +ATL A+ A+ L + P L+DG S Sbjct: 70 KRDELFEVIMANALAVGVGLSDAGVIDRINILQATLAAMKEALSLLFIKPDYVLVDGISK 129 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 + + KGD SLSIAAASI+AKV RDRLM ++P YGF +H GY H Sbjct: 130 IP-VTIPQKTIKKGDGTSLSIAAASIVAKVHRDRLMVSYDAEFPQYGFAAHKGYGCVDHL 188 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 + I E GP IHR+TF ++ Sbjct: 189 KAIAEYGPCPIHRMTFSGVKE 209 >gi|86609281|ref|YP_478043.1| ribonuclease HII [Synechococcus sp. JA-2-3B'a(2-13)] gi|97189393|sp|Q2JKK9|RNH2_SYNJB RecName: Full=Ribonuclease HII; Short=RNase HII gi|86557823|gb|ABD02780.1| ribonuclease HII [Synechococcus sp. JA-2-3B'a(2-13)] Length = 213 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 87/205 (42%), Positives = 127/205 (61%), Gaps = 6/205 (2%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP---FGINDSKKISH 65 RP E + ++ + VAG+DEVGRGALAGPVV AA+IL P G+ DSK++ Sbjct: 6 RPSLIWEGSLWQQGILRVAGVDEVGRGALAGPVVAAAVILPAQMDPKELEGVRDSKQLRP 65 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 ++R + E+I A+ + + SAS ID+ NI +AT+ A+ A+ L I L+DG Sbjct: 66 QQRAQWAERIRQVALAVGVGSASAAEIDRLNIRQATVLAMQRALAKLDPI-EHILLDGLP 124 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + E L + A++KGD ISLSIAAAS++AKV RD LM+ ++YP YG+ ++ GY T +H Sbjct: 125 LAE-LGSRQTALVKGDHISLSIAAASVVAKVWRDALMQSWDRQYPGYGWRTNAGYGTREH 183 Query: 185 QQVIKEKGPSCIHRLTFRPLRNLSV 209 + ++ GP+ HR +F PL L V Sbjct: 184 RLALQNLGPTPQHRRSFAPLAELKV 208 >gi|303235632|ref|ZP_07322239.1| ribonuclease HII [Prevotella disiens FB035-09AN] gi|302484079|gb|EFL47067.1| ribonuclease HII [Prevotella disiens FB035-09AN] Length = 202 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 106/179 (59%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL PN +NDSK++S KKR +L I AI ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPPNYENELLNDSKQLSEKKRYQLRSIIEKDAIAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI A++ A++ A++ L+ P + ++DG ++KGD LS Sbjct: 73 VTAEEIDEINILNASILAMHRALDGLKTRPEAVIVDGNRFKPYKDLPYSTIVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M+ ++YP Y + S+ GYPT KH++ I++ G + HR +F L Sbjct: 133 IAAASILAKTYRDDYMKGLAEEYPQYDWKSNKGYPTKKHREAIRQHGITPYHRKSFTLL 191 >gi|315658466|ref|ZP_07911338.1| ribonuclease HII [Staphylococcus lugdunensis M23590] gi|315496795|gb|EFU85118.1| ribonuclease HII [Staphylococcus lugdunensis M23590] Length = 255 Score = 246 bits (630), Expect = 9e-64, Method: Composition-based stats. Identities = 87/197 (44%), Positives = 123/197 (62%), Gaps = 4/197 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +E E +++++ + GIDEVGRG LAGPVV A+IL+ N+ G+NDSKK+S R +L Sbjct: 61 YEQE-ILQQQPDAIICGIDEVGRGPLAGPVVACAVILNANHHYLGLNDSKKVSAVNRAQL 119 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + + + + AS ID+ NI++AT A+ A+ LQV P LID SI D Sbjct: 120 NQDLMDNVRGYAYGIASAAEIDQLNIYRATQVAMQRAINQLQVRPTHLLIDAMSI--DST 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD+ S+SIAAASI+AK RD LMR + YP YGFD +VGY T H +++ Sbjct: 178 ISQTAIIKGDAKSVSIAAASIMAKEYRDHLMRDYAQVYPHYGFDKNVGYGTKAHLAGLEQ 237 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 238 YGVTPIHRRTFEPVKSM 254 >gi|239815594|ref|YP_002944504.1| ribonuclease HII [Variovorax paradoxus S110] gi|239802171|gb|ACS19238.1| Ribonuclease H [Variovorax paradoxus S110] Length = 240 Score = 246 bits (630), Expect = 9e-64, Method: Composition-based stats. Identities = 80/182 (43%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-S 82 VAG+DE GRG LAGPVV AA+ILD G+ DSK ++ +RE L ++I + A+ S Sbjct: 20 GLVAGVDEAGRGPLAGPVVAAAVILDDQRPIRGLADSKTLTALQRERLNDQILAKALCCS 79 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 ++ A+ + ID HNI +AT+ A+ AVE L++ P L+DG +P L A A++KGD+ Sbjct: 80 VAQATVEEIDTHNILQATMLAMRRAVEGLRLKPAKVLVDGNRLPT-LDVLAEAIVKGDAR 138 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKV RDRL H ++P YGF H GY T +H + ++ G HR +F Sbjct: 139 IKAISAASILAKVHRDRLCEQLHLEFPHYGFAGHKGYGTPEHLEALQRHGACIHHRRSFS 198 Query: 203 PL 204 P+ Sbjct: 199 PV 200 >gi|208779943|ref|ZP_03247287.1| ribonuclease HII [Francisella novicida FTG] gi|208744398|gb|EDZ90698.1| ribonuclease HII [Francisella novicida FTG] Length = 187 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 80/185 (43%), Positives = 116/185 (62%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 + GIDE GRG L+GPVV A +ILD + I G+ DSKK++ KKR+ LY++I + A + Sbjct: 1 MIILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYT 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I S Q ID+ NI +ATL A++ NL+ L+DG +P + + A++KGDS Sbjct: 61 IVEISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSK 119 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 + I+AASI+AKV RD + + YP YGF H GYPT +H + IK+ G IHR +++ Sbjct: 120 IIEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYK 179 Query: 203 PLRNL 207 P++ L Sbjct: 180 PVQML 184 >gi|154491927|ref|ZP_02031553.1| hypothetical protein PARMER_01557 [Parabacteroides merdae ATCC 43184] gi|154088168|gb|EDN87213.1| hypothetical protein PARMER_01557 [Parabacteroides merdae ATCC 43184] Length = 199 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 103/179 (57%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL P+ +NDSK++S KKR L I AI ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPPDFHNEDLNDSKQLSEKKRYALRPIIEREAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI KA+ A++ A++ L+V P LIDG + V+KGD LS Sbjct: 73 VTPEEIDRINILKASFLAMHRAIDQLKVKPEHLLIDGNRFTPYPGLKHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M ++YP Y + + GYPT H++ I+E G + HR TF L Sbjct: 133 IAAASILAKTYRDDYMDSLDREYPAYHWKENKGYPTKAHREAIRECGITPYHRKTFTLL 191 >gi|222151079|ref|YP_002560233.1| ribonuclease HII [Macrococcus caseolyticus JCSC5402] gi|254807980|sp|B9EBC6|RNH2_MACCJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|222120202|dbj|BAH17537.1| ribonuclease HII [Macrococcus caseolyticus JCSC5402] Length = 264 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 85/198 (42%), Positives = 126/198 (63%), Gaps = 5/198 (2%) Query: 13 ELEAMV---REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 E E M+ R N V GIDEVGRG LAGPV+ A+IL+ + G+NDSK++S KR Sbjct: 55 EYEQMLEYERRYNGKVVCGIDEVGRGPLAGPVIACAVILNDGHHYIGLNDSKQLSKHKRA 114 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY+ +T S +I +AS + IDK NI++AT A++ A++ L V P LID ++ L Sbjct: 115 SLYDALTQSVTYAIGAASVEEIDKFNIYEATKLAMHRAIDKLPVKPDVLLIDAMNLNTGL 174 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++ +IKGD+ S+SIAAAS+IAKV RD LM H+++P Y F+ + GY T +H + Sbjct: 175 IEES--IIKGDAKSVSIAAASVIAKVYRDHLMEEIHEEFPYYDFNRNAGYGTKRHLDGLM 232 Query: 190 EKGPSCIHRLTFRPLRNL 207 + G + HR +F P++++ Sbjct: 233 QYGITAHHRKSFEPIKSM 250 >gi|218131835|ref|ZP_03460639.1| hypothetical protein BACEGG_03456 [Bacteroides eggerthii DSM 20697] gi|317474549|ref|ZP_07933823.1| ribonuclease HII [Bacteroides eggerthii 1_2_48FAA] gi|217986138|gb|EEC52477.1| hypothetical protein BACEGG_03456 [Bacteroides eggerthii DSM 20697] gi|316909230|gb|EFV30910.1| ribonuclease HII [Bacteroides eggerthii 1_2_48FAA] Length = 199 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 106/179 (59%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NI A+ A++ AV+ LQ+ P+ LIDG + V+KGD LS Sbjct: 73 VSPEEIDKINILNASFLAMHRAVDRLQLRPQHLLIDGNRFKKYRELPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H++YP Y ++ + GYPT KH+ I E+G S HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPYYDWNHNKGYPTKKHRAAIAERGTSPYHRMTFNLL 191 >gi|70726670|ref|YP_253584.1| ribonuclease HII [Staphylococcus haemolyticus JCSC1435] gi|97189319|sp|Q4L5U7|RNH2_STAHJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|68447394|dbj|BAE04978.1| ribonuclease HII [Staphylococcus haemolyticus JCSC1435] Length = 255 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 77/197 (39%), Positives = 116/197 (58%), Gaps = 4/197 (2%) Query: 14 LEAMVREKN-MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E+ + N + GIDEVGRG LAGPVV A+IL+ + G++DSKK++ KR+ L Sbjct: 61 FESELLNNNPQALICGIDEVGRGPLAGPVVACAVILNEGHRYLGLDDSKKVTASKRQILN 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +K+ + + AS + ID+ NI+ AT A+ A+ L P LID S+ D Sbjct: 121 KKLKDGVLEYAYGLASPEEIDELNIYNATQVAMNRALSQLVNRPDHLLIDAMSL--DTTI 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASI+AK RD LM+ +YP Y F+ +VGY T H + + Sbjct: 179 PQTSIIKGDAKSVSIAAASIMAKEYRDDLMKEIADEYPGYEFEKNVGYGTKAHLDGLNKL 238 Query: 192 GPSCIHRLTFRPLRNLS 208 G + HR +F P+++++ Sbjct: 239 GITPYHRKSFEPIKSMT 255 >gi|229019032|ref|ZP_04175873.1| Ribonuclease [Bacillus cereus AH1273] gi|229025278|ref|ZP_04181698.1| Ribonuclease [Bacillus cereus AH1272] gi|228736031|gb|EEL86606.1| Ribonuclease [Bacillus cereus AH1272] gi|228742272|gb|EEL92431.1| Ribonuclease [Bacillus cereus AH1273] Length = 255 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 94/195 (48%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L G+NDSKK+S KRE Y+ Sbjct: 62 YEHALREKGIMYIAGIDEVGRGPLAGPVVTAAVVLPEEFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID+ NI++AT A+ AV NL P LID +P +P Sbjct: 122 EIKEHAIAIGVGIVSPQIIDEINIYQATKQAMLDAVANLSCTPEYLLIDAMKLPTSIP-- 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ KKYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGKKYPAYGFEQHMGYGTKQHLEAIESHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|329964524|ref|ZP_08301578.1| ribonuclease HII [Bacteroides fluxus YIT 12057] gi|328524924|gb|EGF51976.1| ribonuclease HII [Bacteroides fluxus YIT 12057] Length = 205 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 104/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S ID+ NI A+ A++ AV+ L + P+ L+DG + V+KGD LS Sbjct: 73 VSPGEIDQINILNASFLAMHRAVDQLNIRPQHLLVDGNRFKKYRDVPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H++YP Y ++ + GYPT KH+ I E+G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNGLHEEYPYYDWNHNKGYPTKKHRAAIAERGTTPYHRMTFNLL 191 >gi|314933425|ref|ZP_07840790.1| ribonuclease HII [Staphylococcus caprae C87] gi|313653575|gb|EFS17332.1| ribonuclease HII [Staphylococcus caprae C87] Length = 256 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 81/198 (40%), Positives = 123/198 (62%), Gaps = 4/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 H+E E ++ N + G+DEVGRG LAGPVV A+IL+ ++ G+NDSKK+ K+R Sbjct: 60 HYENE-ILNHNNEALICGVDEVGRGPLAGPVVACAVILNRDHHYLGLNDSKKVPAKQRSI 118 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L EK+ + + + A+ Q ID NI++AT A+ A++ L + P LID + ++ Sbjct: 119 LNEKLKDNVMSYAYGIATPQEIDDLNIYRATQVAMQRAIDQLSIKPTHLLIDAMKLDNNI 178 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P ++IKGD+ S+SIAAASI+AK RD M+ +YP+YGF+ +VGY T +H + I Sbjct: 179 P--QTSIIKGDAKSVSIAAASIMAKEYRDDYMKELANEYPNYGFEKNVGYGTKQHLEAID 236 Query: 190 EKGPSCIHRLTFRPLRNL 207 G HR TF P++++ Sbjct: 237 TFGVIKEHRQTFEPIKSM 254 >gi|329893784|ref|ZP_08269872.1| Ribonuclease HII [gamma proteobacterium IMCC3088] gi|328923507|gb|EGG30821.1| Ribonuclease HII [gamma proteobacterium IMCC3088] Length = 193 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 81/191 (42%), Positives = 110/191 (57%), Gaps = 1/191 (0%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 M+ + VAG+DEVGRG L G VV AA+ILD NN G+ DSKK + K+ L E I Sbjct: 1 MLLAYEIGLVAGVDEVGRGPLVGNVVTAAVILDVNNPVEGLKDSKKCTEKQLHALNEDIQ 60 Query: 77 SSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 + A+ + A+ ID+ NI AT+ A+ AV L + P L+DG +P L A Sbjct: 61 AKALCFAFGQATPAEIDELNILHATMLAMTRAVNGLSITPEHVLVDGNRVPRQLGVPATP 120 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 IKGD IAAASI+AKV RD M +++P+YGF H GYPT +H+Q + + G Sbjct: 121 CIKGDGTYACIAAASILAKVARDAQMVDLDRRHPEYGFARHKGYPTLEHRQALIDHGVLI 180 Query: 196 IHRLTFRPLRN 206 HR +F P++ Sbjct: 181 EHRKSFGPVQR 191 >gi|332828692|gb|EGK01384.1| ribonuclease HII [Dysgonomonas gadei ATCC BAA-286] Length = 199 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 75/176 (42%), Positives = 101/176 (57%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL + +NDSK+++ K+R L I A+ ++ Sbjct: 13 AGCDEAGRGCLAGPVFAAAVILPKDFECEKLNDSKQLTEKERYNLRPLIEERALAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 H+ IDK NI A+ A+ AV +L++ P+ LIDG + V+KGD L Sbjct: 73 VDHKEIDKINILNASFLAMQRAVASLKIRPQHLLIDGNRFKKYEDIPHTCVVKGDGKLLP 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAAS++AK RD M H +YP Y +D + GYPT KH+ IK G + HRLTF Sbjct: 133 IAAASVLAKTYRDDYMEKLHGEYPLYDWDHNKGYPTKKHRLAIKAYGVTPYHRLTF 188 >gi|149196242|ref|ZP_01873297.1| ribonuclease HII [Lentisphaera araneosa HTCC2155] gi|149140503|gb|EDM28901.1| ribonuclease HII [Lentisphaera araneosa HTCC2155] Length = 209 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 84/204 (41%), Positives = 121/204 (59%), Gaps = 4/204 (1%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKIS 64 +PE F E R + G+DEVGRG LAGPVV A I+ +P G++DSKK+S Sbjct: 1 MPEPDMFFFEEHYRLLGFQAIGGVDEVGRGPLAGPVVAACCIIREGVVLPEGVDDSKKLS 60 Query: 65 HKKREELYEKITSS--AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 KKR +Y+++ ++ + ID+ NI +A+ A+ AV+ ++V P LIDG Sbjct: 61 RKKRRLIYDQLLEVEGVNYALGIVEAEEIDEINILQASHLAMRKAVKAMKVKPDYLLIDG 120 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 +P + +++KGDS S+SIAAASI+AK RD LM KKYP+YGF+ H+GY T Sbjct: 121 LPVP-GFEQDSRSIVKGDSRSVSIAAASILAKEFRDDLMIEYSKKYPEYGFEKHMGYGTK 179 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRN 206 H + +K GP +HR +F P+R Sbjct: 180 LHMEALKNCGPCPLHRRSFAPVRK 203 >gi|228986980|ref|ZP_04147106.1| Ribonuclease [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772758|gb|EEM21198.1| Ribonuclease [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 257 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 92/195 (47%), Positives = 128/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KR+ Y+ Sbjct: 62 YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRDRFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID+ NI++AT A+ AV NL P+ LID +P P Sbjct: 122 EIKVQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEVHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 ILEEHRKSFAPIKDM 254 >gi|160872277|ref|ZP_02062409.1| ribonuclease HII [Rickettsiella grylli] gi|159121076|gb|EDP46414.1| ribonuclease HII [Rickettsiella grylli] Length = 191 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 84/187 (44%), Positives = 112/187 (59%), Gaps = 2/187 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DE GRG LAGPV AA+ILD G+ DSK+++ K RE +KI A + Sbjct: 4 QSVAGVDEAGRGPLAGPVFAAAVILDNKKKMTGLKDSKQLTAKSREYFAKKIQEKAKTWA 63 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I A + IDK NI A L A+ AV L +IP L+DG+ P+ L + A+IKGD Sbjct: 64 IGRAEVEEIDKLNIFHACLLAMKRAVCALALIPDFVLVDGKHCPQ-LSVPSKAIIKGDEK 122 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKV RD M + +YP YGF H GY T +H +K+ GPS IHR +F Sbjct: 123 ITAISAASILAKVHRDANMVLLDAEYPGYGFAQHKGYTTKQHLLALKKLGPSPIHRRSFA 182 Query: 203 PLRNLSV 209 P+R+ + Sbjct: 183 PIRHYEL 189 >gi|86156706|ref|YP_463491.1| ribonuclease HII [Anaeromyxobacter dehalogenans 2CP-C] gi|97182177|sp|Q2IMM4|RNH2_ANADE RecName: Full=Ribonuclease HII; Short=RNase HII gi|85773217|gb|ABC80054.1| ribonuclease H [Anaeromyxobacter dehalogenans 2CP-C] Length = 283 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 80/195 (41%), Positives = 115/195 (58%), Gaps = 2/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 EA + E+ + VAG+DE G LAGPVV A +L + P GI+DSK++ +RE L Sbjct: 66 LRYEAELWERGLVHVAGVDEAGMAPLAGPVVAGACVLPRDYRPRGIDDSKQLDRAERERL 125 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 E I +A+ +++ A + ID+ N++ A + A+ AV+ L P L+D R +P DLP Sbjct: 126 AEDIKRNAVCWAVARAEVEEIDRLNVYWAGMLALRRAVDGLSARPEHLLVDARKLP-DLP 184 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++ GD++SL+IAAASI+AK RD LM +P YGF H GYPTA+H + Sbjct: 185 FPQTPIVHGDALSLTIAAASILAKTARDALMAELDLAHPGYGFARHKGYPTAEHFDALGR 244 Query: 191 KGPSCIHRLTFRPLR 205 G IHR +F P+R Sbjct: 245 LGACPIHRRSFAPVR 259 >gi|332665027|ref|YP_004447815.1| ribonuclease H [Haliscomenobacter hydrossis DSM 1100] gi|332333841|gb|AEE50942.1| Ribonuclease H [Haliscomenobacter hydrossis DSM 1100] Length = 199 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 71/185 (38%), Positives = 105/185 (56%), Gaps = 2/185 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL + +NDSK+++ ++R EL I +SA +++ Sbjct: 13 AGCDEAGRGCLAGPVFAAAVILPKDFRHPLLNDSKQLTEQQRLELRCIIKASATCWAVAQ 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ID+ NI A+ A++ A++ L+ P L+DG +IKGD I +S Sbjct: 73 VDPAEIDQVNILNASFLAMHRALDKLETPPELILVDGNRFTPYRNIAHRCIIKGDGIYMS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL- 204 IAAASI+AK RD M + +P YG+ + GYPT H++ ++ G + HR +FR L Sbjct: 133 IAAASILAKTYRDDYMADLAESHPQYGWSKNKGYPTKAHREALRHHGVTSHHRRSFRLLP 192 Query: 205 RNLSV 209 LS+ Sbjct: 193 EQLSL 197 >gi|257089969|ref|ZP_05584330.1| ribonuclease HII [Enterococcus faecalis CH188] gi|256998781|gb|EEU85301.1| ribonuclease HII [Enterococcus faecalis CH188] Length = 255 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 90/196 (45%), Positives = 126/196 (64%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E +K +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KK+E LY Sbjct: 61 QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKQETLY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ I + A ID+ NI++AT A+ A+++L P LID + D+P Sbjct: 121 NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLIDAMQL--DVPQ 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM + YP YGF ++ GY T +H +++ Sbjct: 179 PQESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKY 238 Query: 192 GPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 239 GVTPIHRRTFAPIKDM 254 >gi|313667504|ref|YP_004047788.1| ribonuclease HII [Neisseria lactamica ST-640] gi|313004966|emb|CBN86394.1| ribonuclease HII [Neisseria lactamica 020-06] Length = 212 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 82/205 (40%), Positives = 113/205 (55%), Gaps = 3/205 (1%) Query: 6 IPERPHFELEAMVREKNMWPV--AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 +P F + N+ + AG+DE GRG L G V AA+IL G+ DSKK+ Sbjct: 1 MPSETPFRRHRTIPTGNIMHILTAGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKL 60 Query: 64 SHKKREELYEKITSSAIISISSAS-HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S KKR+ L + I + A +A+ + I NI AT+ A+ A++ L V P IDG Sbjct: 61 SEKKRDALAKIIKNQAAAWHVAAAGPEEIASLNILHATMLAMKRAIDGLAVRPEKIFIDG 120 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 IPE L A AV+KGDS + I+AAS++AK RD M +++P YGFD H GY T Sbjct: 121 NRIPEHLNIPAEAVVKGDSKIIEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTK 180 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 +H + +K+ G HR F P+RNL Sbjct: 181 QHLEALKQYGVLPEHRRDFAPVRNL 205 >gi|320107359|ref|YP_004182949.1| Ribonuclease H [Terriglobus saanensis SP1PR4] gi|319925880|gb|ADV82955.1| Ribonuclease H [Terriglobus saanensis SP1PR4] Length = 248 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 88/208 (42%), Positives = 129/208 (62%), Gaps = 13/208 (6%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF---GI 57 + C+ P E +R +AG+DEVGRGAL GPVV AA+IL G+ Sbjct: 21 LVCSDAP-------EQALRHLGYLVIAGVDEVGRGALCGPVVAAAVILPEEMGWLATKGL 73 Query: 58 NDSKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116 DSK+++ ++REEL +I S A+ SI++ + ID+ NI++A+ A+ AV+ L V P Sbjct: 74 RDSKQLTREQREELDAEIRSVALAASIAAVDAETIDRVNIYQASRMAMQMAVDALTVRPD 133 Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 LID I + PC +I GDS+SLSIAAAS++AKV RD +MR +++P YG +SH Sbjct: 134 HLLIDAMRISD--PCAQTRLIYGDSLSLSIAAASVVAKVYRDAMMRKFAEEHPQYGMESH 191 Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 GY T +H++ +KE GP+ +HR +F P+ Sbjct: 192 KGYGTPEHRRALKEHGPTPLHRRSFAPV 219 >gi|110834018|ref|YP_692877.1| ribonuclease H [Alcanivorax borkumensis SK2] gi|123149533|sp|Q0VQE3|RNH2_ALCBS RecName: Full=Ribonuclease HII; Short=RNase HII gi|110647129|emb|CAL16605.1| ribonuclease H [Alcanivorax borkumensis SK2] Length = 220 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 90/188 (47%), Positives = 113/188 (60%), Gaps = 3/188 (1%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77 + M VAG+DEVGRG L G VV AA+ILDP G+ DSKKIS KKR L +I S Sbjct: 25 FWQPGM-LVAGVDEVGRGPLVGAVVTAAVILDPKYPIVGLADSKKISEKKRLALESEIKS 83 Query: 78 SAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 A+ ++ A ID+ NI AT+ A+ AV L V + LIDG +P L C A AV Sbjct: 84 HALGWALGRAESDEIDQLNILHATMLAMQRAVAALPVEAHAVLIDGNRVPA-LQCPAQAV 142 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 +KGD +I+AASI+AKV RDR M H +YP YGFD H GYPTA H +++ G Sbjct: 143 VKGDGRVPAISAASILAKVARDREMYALHARYPQYGFDRHKGYPTAVHMAALEQHGALAE 202 Query: 197 HRLTFRPL 204 HR +F P+ Sbjct: 203 HRRSFGPV 210 >gi|167764134|ref|ZP_02436261.1| hypothetical protein BACSTE_02517 [Bacteroides stercoris ATCC 43183] gi|167698250|gb|EDS14829.1| hypothetical protein BACSTE_02517 [Bacteroides stercoris ATCC 43183] Length = 201 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 105/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEALAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S IDK NI A+ A++ AV+ LQ+ P+ LIDG + V+KGD LS Sbjct: 73 VSPGEIDKINILNASFLAMHRAVDRLQLRPQHLLIDGNRFKKYRDIPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H+++P Y ++ + GYPT KH+ I E+G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWNHNKGYPTKKHRAAIAERGTTPYHRMTFNLL 191 >gi|302344581|ref|YP_003809110.1| ribonuclease H [Desulfarculus baarsii DSM 2075] gi|301641194|gb|ADK86516.1| Ribonuclease H [Desulfarculus baarsii DSM 2075] Length = 217 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 77/196 (39%), Positives = 117/196 (59%), Gaps = 2/196 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E ++ + +AG DE GRG LAGPVV AA++L + G++DSK++S +RE L E+ Sbjct: 18 EMLLWRRGCRLLAGADEAGRGPLAGPVVAAAVMLRADWPDPGVDDSKRLSAARREFLAER 77 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I + A +++ ID+ NIH A+L A+ AVE L+ P L+DGR + L Sbjct: 78 IKADAAGWAVAVVEADEIDRLNIHNASLLAMSRAVEQLRPRPDFLLVDGRFVTP-LDLPQ 136 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 AV+ GD+ IAAASI+AKV RD LM H+++P Y F ++ GYPT +H++ + GP Sbjct: 137 KAVVGGDASCRCIAAASILAKVWRDGLMARLHERWPQYNFAANKGYPTPQHKEALARFGP 196 Query: 194 SCIHRLTFRPLRNLSV 209 IHR ++ + + + Sbjct: 197 CPIHRRSYADVAQMPL 212 >gi|299147105|ref|ZP_07040172.1| ribonuclease HII [Bacteroides sp. 3_1_23] gi|298514990|gb|EFI38872.1| ribonuclease HII [Bacteroides sp. 3_1_23] Length = 200 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 105/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI +A+ A++ AV+ L P+ LIDG + V+KGD LS Sbjct: 73 VSPEEIDEINILRASFLAMHRAVDQLSTRPQHLLIDGNRFTKYPGVPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H+++P Y +D + GYPT KH+ I E+G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRASIAERGTTPYHRMTFNLL 191 >gi|260910879|ref|ZP_05917522.1| ribonuclease HII [Prevotella sp. oral taxon 472 str. F0295] gi|260634987|gb|EEX53034.1| ribonuclease HII [Prevotella sp. oral taxon 472 str. F0295] Length = 202 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 69/184 (37%), Positives = 107/184 (58%), Gaps = 1/184 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSKK++ K+R L +I + A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVFAAAVILPTDYENALLNDSKKLTEKQRYALRTQIEADALAWAVGE 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + ID+ NI A++ A++ A++ L++ P++ ++DG ++KGD+ LS Sbjct: 73 VTADEIDEINILNASILAMHRALDGLKLRPQAVIVDGNRFKPYGTLPHETIVKGDAKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 IAAASI+AK RD M +YP Y + + GYPT H+ I+E G S HR TF+ ++ Sbjct: 133 IAAASILAKTYRDDYMDNLALQYPAYQWKVNKGYPTKAHRAAIEEHGISPFHRKTFKGVK 192 Query: 206 NLSV 209 + V Sbjct: 193 EMLV 196 >gi|227890783|ref|ZP_04008588.1| ribonuclease HII [Lactobacillus salivarius ATCC 11741] gi|227867192|gb|EEJ74613.1| ribonuclease HII [Lactobacillus salivarius ATCC 11741] Length = 255 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 86/208 (41%), Positives = 134/208 (64%), Gaps = 3/208 (1%) Query: 3 CNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62 + + ++E + K + +AG+DEVGRG LAGPVV AA+IL + F +NDSK+ Sbjct: 49 NEKLKFQNRLKIERDLWNKGIEYIAGVDEVGRGPLAGPVVTAAVILPHDFDIFEVNDSKQ 108 Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 +S KKREELY+KI A+ +S+ + + ID+ NI++AT A+ A+E+L + P+ ++D Sbjct: 109 LSEKKREELYKKILEKAVAVSVGLSDNNLIDEVNIYEATRLAMKQAIESLNITPQKIIVD 168 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 +I D +IKGD+ S S+AAASI+AKVTRD LM+ + YP YGF+ + GY T Sbjct: 169 AMTI--DTKIPQLRLIKGDAKSASVAAASIVAKVTRDHLMQFYARIYPGYGFEKNDGYGT 226 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNLSV 209 +H + ++ KG + IHR +F P++ + + Sbjct: 227 KQHLEGLENKGVTPIHRQSFEPVKKILL 254 >gi|325141206|gb|EGC63706.1| ribonuclease HII [Neisseria meningitidis CU385] Length = 194 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 82/182 (45%), Positives = 105/182 (57%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I A +A Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKDQAAAWHVAA 65 Query: 87 -SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 ASPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NL 207 NL Sbjct: 186 NL 187 >gi|301300759|ref|ZP_07206943.1| ribonuclease HII [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851609|gb|EFK79309.1| ribonuclease HII [Lactobacillus salivarius ACS-116-V-Col5a] Length = 255 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 86/208 (41%), Positives = 135/208 (64%), Gaps = 3/208 (1%) Query: 3 CNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62 + + ++E + K + +AG+DEVGRG LAGPVV AA+IL + F +NDSK+ Sbjct: 49 NEKLKFQNRLKIERDLWNKGIEYIAGVDEVGRGPLAGPVVTAAVILPHDFDIFEVNDSKQ 108 Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 +S KKREELY+KI A+ +S+ + + ID+ NI++AT A+ A+E+L + P+ ++D Sbjct: 109 LSEKKREELYKKILEKAVAVSVGLSDNNLIDEVNIYEATRLAMKQAIESLNITPQKIIVD 168 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 +I D +IKGD+ S S+AAASI+AKVTRD LM+ + YP+YGF+ + GY T Sbjct: 169 AMTI--DTKIPQLRLIKGDAKSASVAAASIVAKVTRDHLMQFYARIYPEYGFEKNDGYGT 226 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNLSV 209 +H + ++ KG + IHR +F P++ + + Sbjct: 227 KQHLEGLENKGVTPIHRQSFEPVKKILL 254 >gi|212692764|ref|ZP_03300892.1| hypothetical protein BACDOR_02262 [Bacteroides dorei DSM 17855] gi|237724942|ref|ZP_04555423.1| ribonuclease HII [Bacteroides sp. D4] gi|212664700|gb|EEB25272.1| hypothetical protein BACDOR_02262 [Bacteroides dorei DSM 17855] gi|229436680|gb|EEO46757.1| ribonuclease HII [Bacteroides dorei 5_1_36/D4] Length = 201 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 106/179 (59%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ +R L E + A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPVDFKNELLNDSKQLTEHQRYALREIVEREALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI A+ A++ AV+ L++ P+ LIDG + V+KGD LS Sbjct: 73 VTPEEIDEINILNASFLAMHRAVDQLKIRPQHLLIDGNRFKKYQDLPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M HK+YP Y ++S+ GYPT KH+ I+E G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNGLHKEYPFYDWNSNKGYPTKKHRAAIREYGTTPYHRMTFNLL 191 >gi|265754659|ref|ZP_06089711.1| ribonuclease HII [Bacteroides sp. 3_1_33FAA] gi|263234773|gb|EEZ20341.1| ribonuclease HII [Bacteroides sp. 3_1_33FAA] Length = 201 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 106/179 (59%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ +R L E + A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPVDFKNELLNDSKQLTEHQRYALREIVEKEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI A+ A++ AV+ L++ P+ LIDG + V+KGD LS Sbjct: 73 VTPEEIDEINILNASFLAMHRAVDQLKIRPQHLLIDGNRFKKYQDLPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M HK+YP Y ++S+ GYPT KH+ I+E G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNGLHKEYPFYDWNSNKGYPTKKHRAAIREHGTTPYHRMTFNLL 191 >gi|114570742|ref|YP_757422.1| RNase HII [Maricaulis maris MCS10] gi|122315504|sp|Q0AMK3|RNH2_MARMM RecName: Full=Ribonuclease HII; Short=RNase HII gi|114341204|gb|ABI66484.1| RNase HII [Maricaulis maris MCS10] Length = 218 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 87/204 (42%), Positives = 123/204 (60%), Gaps = 7/204 (3%) Query: 5 SIPERPHFELEAMVREKNMW---PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61 +IP++ + + + M +AG+DE GRG L+GPVV AA+ILDP G+ DSK Sbjct: 4 TIPQKDN----QSLNKAGMGNTVRIAGVDEAGRGPLSGPVVAAAVILDPTRPITGLGDSK 59 Query: 62 KISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 +S ++R EL+ I ++A + I A ID+ NI AT+ A+ AV L V P L+D Sbjct: 60 ALSERRRRELFRLIRANAWVGIGIAEPAEIDRLNILHATMAAMRRAVARLPVRPTLVLVD 119 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 G +P LPC A A+IKGD+ I AASIIAK RD LM A +++P YGF+ H GYP+ Sbjct: 120 GNRLPPGLPCPAEAIIKGDAKEACIGAASIIAKTVRDDLMEQAARRFPGYGFEGHKGYPS 179 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLR 205 A H+ ++ G IHR ++ P+R Sbjct: 180 AAHKAALETSGACPIHRRSYAPVR 203 >gi|254670416|emb|CBA05987.1| Ribonuclease HII [Neisseria meningitidis alpha153] Length = 194 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 81/182 (44%), Positives = 106/182 (58%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I + A +A Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKNQAAAWHVAA 65 Query: 87 -SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 ATPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NL 207 NL Sbjct: 186 NL 187 >gi|94310391|ref|YP_583601.1| ribonuclease HII [Cupriavidus metallidurans CH34] gi|189043647|sp|Q1LNE4|RNH2_RALME RecName: Full=Ribonuclease HII; Short=RNase HII gi|93354243|gb|ABF08332.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Cupriavidus metallidurans CH34] Length = 226 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 80/188 (42%), Positives = 119/188 (63%), Gaps = 5/188 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 + G+DE GRG LAGPV AA++L+P G+ DSK +S +KRE L+++I A+ Sbjct: 24 QRLCGVDEAGRGPLAGPVYAAAVVLNPARQIRGLADSKILSAEKREALFDRICDHALGWH 83 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLPCQAFAVIKG 139 I+SAS + ID NI A++ A+ AV+ L VIP +DG P+ + A++KG Sbjct: 84 IASASVEEIDSINILHASMLAMQRAVQGLAASGVIPDLVQVDGNRCPQ-VAFPVEAIVKG 142 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D+ +I+AASI+AKV RDR + H++YP+YGFDSH GYPT +H +++ G + HR Sbjct: 143 DAKVRAISAASILAKVARDRELLKLHQEYPEYGFDSHFGYPTPQHFTALEQFGATPHHRR 202 Query: 200 TFRPLRNL 207 +F P+R + Sbjct: 203 SFAPVRKV 210 >gi|332678593|gb|AEE87722.1| Ribonuclease HII [Francisella cf. novicida Fx1] Length = 187 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 80/185 (43%), Positives = 116/185 (62%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 + GIDE GRG L+GPVV A +ILD + I G+ DSKK++ KKR+ LY++I + A + Sbjct: 1 MIILGIDEAGRGPLSGPVVAAGVILDRDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYT 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I S Q ID+ NI +ATL A++ NL+ L+DG +P + + A++KGDS Sbjct: 61 IVEISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSK 119 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 + I+AASI+AKV RD + + YP YGF H GYPT +H + IK+ G IHR +++ Sbjct: 120 IIEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYK 179 Query: 203 PLRNL 207 P++ L Sbjct: 180 PVQML 184 >gi|119898186|ref|YP_933399.1| ribonuclease HII [Azoarcus sp. BH72] gi|166225166|sp|A1K6Q7|RNH2_AZOSB RecName: Full=Ribonuclease HII; Short=RNase HII gi|119670599|emb|CAL94512.1| Ribonuclease H [Azoarcus sp. BH72] Length = 204 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 79/189 (41%), Positives = 112/189 (59%), Gaps = 2/189 (1%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 + + + G+DE GRG L GPVV AA+ILDP G+ DSKK++ + R+ L I A Sbjct: 4 SQRLRLICGVDEAGRGPLCGPVVAAAVILDPARPIDGLADSKKLTERARDRLAPLIRERA 63 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + +++ AS + ID+ NI AT+ A+ AV L V+P LIDG P L A AV+ Sbjct: 64 LAWAVAEASVEEIDRLNILHATMLAMQRAVSALSVLPGEVLIDGNRCPT-LAVPARAVVG 122 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD+ +I+AASI+AK RD M+ H++YP YG H GYPTA H ++ G + +R Sbjct: 123 GDASEPAISAASILAKTVRDAGMKALHEQYPHYGLADHKGYPTAGHLAALRRHGIADFYR 182 Query: 199 LTFRPLRNL 207 +F P+R L Sbjct: 183 RSFGPVREL 191 >gi|289550965|ref|YP_003471869.1| Ribonuclease HII [Staphylococcus lugdunensis HKU09-01] gi|289180497|gb|ADC87742.1| Ribonuclease HII [Staphylococcus lugdunensis HKU09-01] Length = 255 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 88/197 (44%), Positives = 124/197 (62%), Gaps = 4/197 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +E E +++++ + GIDEVGRG LAGPVV A+IL+ N+ G+NDSKK+S R +L Sbjct: 61 YEQE-ILQQQPDAIICGIDEVGRGPLAGPVVACAVILNANHHYLGLNDSKKVSAVNRAQL 119 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + + ++ + AS ID+ NI++AT A+ A+ LQV P LID SI D Sbjct: 120 NQDLMANVRGYAYGIASAAEIDQLNIYRATQVAMQRAINQLQVRPTHLLIDAMSI--DST 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD+ S+SIAAASI+AK RD LMR + YP YGFD +VGY T H +K+ Sbjct: 178 ISQTAIIKGDAKSVSIAAASIMAKEYRDHLMRDYAQVYPYYGFDKNVGYGTKAHLAGLKQ 237 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 238 YGVTPIHRRTFEPVKSM 254 >gi|161870870|ref|YP_001600044.1| ribonuclease HII [Neisseria meningitidis 053442] gi|189043631|sp|A9M3R5|RNH2_NEIM0 RecName: Full=Ribonuclease HII; Short=RNase HII gi|161596423|gb|ABX74083.1| ribonuclease HII [Neisseria meningitidis 053442] Length = 194 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 81/182 (44%), Positives = 105/182 (57%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I A +A Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKEQAAAWYVAA 65 Query: 87 -SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 ATPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLDIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NL 207 NL Sbjct: 186 NL 187 >gi|56708338|ref|YP_170234.1| ribonuclease HII [Francisella tularensis subsp. tularensis SCHU S4] gi|110670809|ref|YP_667366.1| ribonuclease HII [Francisella tularensis subsp. tularensis FSC198] gi|134301623|ref|YP_001121591.1| ribonuclease HII [Francisella tularensis subsp. tularensis WY96-3418] gi|224457462|ref|ZP_03665935.1| ribonuclease HII [Francisella tularensis subsp. tularensis MA00-2987] gi|254369606|ref|ZP_04985617.1| ribonuclease H [Francisella tularensis subsp. holarctica FSC022] gi|254370960|ref|ZP_04986964.1| ribonuclease H [Francisella tularensis subsp. tularensis FSC033] gi|254875160|ref|ZP_05247870.1| ribonuclease HII [Francisella tularensis subsp. tularensis MA00-2987] gi|81597296|sp|Q5NFF8|RNH2_FRATT RecName: Full=Ribonuclease HII; Short=RNase HII gi|123169324|sp|Q14GW0|RNH2_FRAT1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225188|sp|A4IX19|RNH2_FRATW RecName: Full=Ribonuclease HII; Short=RNase HII gi|56604830|emb|CAG45911.1| Ribonuclease HII [Francisella tularensis subsp. tularensis SCHU S4] gi|110321142|emb|CAL09294.1| Ribonuclease HII [Francisella tularensis subsp. tularensis FSC198] gi|134049400|gb|ABO46471.1| ribonuclease HII [Francisella tularensis subsp. tularensis WY96-3418] gi|151569202|gb|EDN34856.1| ribonuclease H [Francisella tularensis subsp. tularensis FSC033] gi|157122560|gb|EDO66695.1| ribonuclease H [Francisella tularensis subsp. holarctica FSC022] gi|254841159|gb|EET19595.1| ribonuclease HII [Francisella tularensis subsp. tularensis MA00-2987] gi|282159575|gb|ADA78966.1| ribonuclease HII [Francisella tularensis subsp. tularensis NE061598] Length = 187 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 80/185 (43%), Positives = 116/185 (62%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 + GIDE GRG L+GPVV A +ILD + I G+ DSKK++ KKR+ LY++I + A + Sbjct: 1 MIILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYT 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I S Q ID+ NI +ATL A++ NL+ L+DG +P + + A++KGDS Sbjct: 61 IVEISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSK 119 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 + I+AASI+AKV RD + + YP YGF H GYPT +H + IK+ G IHR +++ Sbjct: 120 IIEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYK 179 Query: 203 PLRNL 207 P++ L Sbjct: 180 PVQVL 184 >gi|288800584|ref|ZP_06406042.1| ribonuclease HII [Prevotella sp. oral taxon 299 str. F0039] gi|288332797|gb|EFC71277.1| ribonuclease HII [Prevotella sp. oral taxon 299 str. F0039] Length = 214 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 105/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL N +NDSK+++ K+R L + I AI ++ Sbjct: 26 AGCDEAGRGCLAGSVYAAAVILPQNYSHPYLNDSKQLTEKRRMILRKDIEKDAIAWAVGV 85 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI KA+ A++ A++ L+V P + +IDG ++KGDS LS Sbjct: 86 VSPEEIDEINILKASFLAMHRAIDQLKVRPEALIIDGNRFTPYQNLPYTPIVKGDSKYLS 145 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H +YP Y + + GYPT H++ IK+ G + HR++F L Sbjct: 146 IAAASILAKTYRDEYMEELHSQYPQYEWSKNKGYPTVAHREAIKKYGTTPFHRMSFNLL 204 >gi|221233322|ref|YP_002515758.1| ribonuclease HII [Caulobacter crescentus NA1000] gi|239977582|sp|B8GZ34|RNH2_CAUCN RecName: Full=Ribonuclease HII; Short=RNase HII gi|239977583|sp|P0CAW4|RNH2_CAUCR RecName: Full=Ribonuclease HII; Short=RNase HII gi|220962494|gb|ACL93850.1| ribonuclease HII [Caulobacter crescentus NA1000] Length = 211 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 95/201 (47%), Positives = 116/201 (57%), Gaps = 5/201 (2%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 +P P LE PV G+DE GRG AGPV A+ILDP+ IP G+NDSKK+S Sbjct: 1 MPPGPDMTLELAC---GQAPVCGVDEAGRGPWAGPVSAGAVILDPDRIPKGLNDSKKLSA 57 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 K R L E+I AI + AS + I + NI A A+ AVE L V P AL+DG Sbjct: 58 KARAALEEEIKDVAISWCVGLASIEEIAQLNILHAAGLAMRRAVEGLAVTPAFALVDGN- 116 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 LPC VIKGDS+S SIAAASI+AK RDR+M A YP YGF H GY H Sbjct: 117 YAFKLPCPVKTVIKGDSLSCSIAAASILAKEARDRIMIEADALYPGYGFAGHKGYHAKVH 176 Query: 185 QQVIKEKGPSCIHRLTFRPLR 205 + ++ GPS IHRL + P++ Sbjct: 177 VEGLRRLGPSPIHRLGWAPVK 197 >gi|237747799|ref|ZP_04578279.1| ribonuclease HII [Oxalobacter formigenes OXCC13] gi|229379161|gb|EEO29252.1| ribonuclease HII [Oxalobacter formigenes OXCC13] Length = 219 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 82/190 (43%), Positives = 118/190 (62%), Gaps = 2/190 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + G DE GRG +AGPV AA+ILDP++ G+ DSKK+S +R+EL +I Sbjct: 23 YASGVTLFCGADEAGRGPIAGPVFAAAVILDPDHPIAGLKDSKKLSEHRRDELALEIKQY 82 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A +I+ S + ID+ NI A++ A+ A+E+L + P ALIDG P+ L A A++ Sbjct: 83 ARAWAIAECSIEEIDELNILHASMLAMKRAIESLAIRPELALIDGNRCPK-LAIAAKAIV 141 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD +I+AASI+AK RD +M H++YP+YGFD H GYPTA H + + G S +H Sbjct: 142 KGDDKVPAISAASILAKTARDAVMLDLHRQYPEYGFDRHKGYPTAYHLEQLSIHGVSPVH 201 Query: 198 RLTFRPLRNL 207 R T+ P+R + Sbjct: 202 RKTYAPVRKI 211 >gi|325570947|ref|ZP_08146566.1| ribonuclease HII [Enterococcus casseliflavus ATCC 12755] gi|325156273|gb|EGC68457.1| ribonuclease HII [Enterococcus casseliflavus ATCC 12755] Length = 254 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 90/195 (46%), Positives = 123/195 (63%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E ++ +AG+DEVGRG LAGPVV AA+IL G+NDSK++S KKREEL+ Sbjct: 60 RFENEAFQQGARFIAGLDEVGRGPLAGPVVSAAVILPKECQILGLNDSKQLSAKKREELF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I + A+ + I S + ID+ NI++A+ A+ A+ +L V P LID +I D+P Sbjct: 120 IEIQNKAVAVGIGVVSPEEIDRINIYQASRLAMKEALIDLAVKPEHLLIDAMTIETDIPQ 179 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 Q+ +IKGD+ S+SIAAASIIAKV RD LM+ H YP YGFD + GY T H + + Sbjct: 180 QS--LIKGDARSISIAAASIIAKVYRDNLMKDFHDVYPFYGFDQNAGYGTKVHLEGLAAH 237 Query: 192 GPSCIHRLTFRPLRN 206 G IHR TF P++ Sbjct: 238 GICPIHRKTFAPVKQ 252 >gi|258645842|ref|ZP_05733311.1| ribonuclease HII [Dialister invisus DSM 15470] gi|260403214|gb|EEW96761.1| ribonuclease HII [Dialister invisus DSM 15470] Length = 256 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 91/197 (46%), Positives = 134/197 (68%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +E E+ +K + VAGIDEVGRG LAGPV VAA+IL P+ G+NDSKK++ ++REE+ Sbjct: 56 YEPESSFYKKGLEYVAGIDEVGRGPLAGPVTVAAVILKPHFFIAGLNDSKKVAPRRREEI 115 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +KI +A+ ISI S S + ID NI+ AT++A+Y AV NL++ P++ ++D P P Sbjct: 116 AKKIHETAVDISIVSLSPEEIDMRNIYAATMEAMYRAVRNLKIQPQAVIVDAM--PLHFP 173 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +++ GD+ S S+AAASI+AKV RD LM K YP YGF + GY TA+H + I+ Sbjct: 174 VPSLSLVHGDAKSASVAAASIVAKVHRDHLMDEYDKVYPGYGFSQNKGYGTAEHIEAIRT 233 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 234 LGITPIHRKSFEPVKSM 250 >gi|218660707|ref|ZP_03516637.1| ribonuclease HII [Rhizobium etli IE4771] Length = 215 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 94/173 (54%), Positives = 128/173 (73%) Query: 34 RGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDK 93 RG LAGPVV AA+ILDP IP G+NDSK++S ++REEL+ +I ++A +SI+S+S ID+ Sbjct: 30 RGPLAGPVVAAAVILDPKRIPEGLNDSKQLSAQRREELFVQILATATVSIASSSSTRIDE 89 Query: 94 HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIA 153 +I KA+LDA+ A+ +L V L DG +P L C AV+KGD+ S+SIAAASI+A Sbjct: 90 TDIRKASLDAMRRAICSLAVPASYVLTDGLDVPPGLDCPGQAVVKGDARSVSIAAASIVA 149 Query: 154 KVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 KVTRDR+M AH +PDYGF +HVGY TA+H+ I++ GP +HR++FRPLR Sbjct: 150 KVTRDRMMARAHNVFPDYGFAAHVGYGTAQHRAGIEKHGPCSLHRMSFRPLRK 202 >gi|103486453|ref|YP_616014.1| ribonuclease HII [Sphingopyxis alaskensis RB2256] gi|122985137|sp|Q1GUJ1|RNH2_SPHAL RecName: Full=Ribonuclease HII; Short=RNase HII gi|98976530|gb|ABF52681.1| Ribonuclease H [Sphingopyxis alaskensis RB2256] Length = 198 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 77/184 (41%), Positives = 112/184 (60%), Gaps = 2/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + G+DE GRG LAGPVV AA++L G++DSKK+S ++R L I + I Sbjct: 16 IVGVDEAGRGPLAGPVVAAAVLLCEGG-IAGLDDSKKLSARRRGALESAIRAQCRWGIGE 74 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS + ID+ NI +AT A+ AVE L P L+DG +P QA A++ GD++ Sbjct: 75 ASVEEIDRINILQATFLAMTRAVEALGFEPAEVLVDGNRLPR-WRYQARAIVGGDALHPC 133 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AK RDRLM A + YP +G++S++GY TA+H ++ GP+ HR +F P+ Sbjct: 134 ISAASILAKQHRDRLMIAAAQDYPAFGWESNMGYGTAQHLAALRRHGPTPHHRTSFAPVA 193 Query: 206 NLSV 209 L + Sbjct: 194 QLQL 197 >gi|224536639|ref|ZP_03677178.1| hypothetical protein BACCELL_01515 [Bacteroides cellulosilyticus DSM 14838] gi|224521730|gb|EEF90835.1| hypothetical protein BACCELL_01515 [Bacteroides cellulosilyticus DSM 14838] Length = 201 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 105/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ +R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEHQRYALREVIEKEALAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NI A+ A++ AV+ L++ P+ LIDG + VIKGD LS Sbjct: 73 VSPEEIDKINILNASFLAMHRAVDQLKMRPQHLLIDGNRFKKYQDLPHTTVIKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAAS++AK RD M H+++P Y +D + GYPT KH+ I E+G + HR+TF L Sbjct: 133 IAAASVLAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAISERGTTPYHRMTFNLL 191 >gi|237709459|ref|ZP_04539940.1| ribonuclease HII [Bacteroides sp. 9_1_42FAA] gi|229456515|gb|EEO62236.1| ribonuclease HII [Bacteroides sp. 9_1_42FAA] Length = 201 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 106/179 (59%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ +R L E + A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPVDFKNELLNDSKQLTEHQRYVLREIVEREALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI A+ A++ AV+ L++ P+ LIDG + V+KGD LS Sbjct: 73 VTPEEIDEINILNASFLAMHRAVDQLKIRPQHLLIDGNRFKKYQDLPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M HK+YP Y ++S+ GYPT KH+ I+E G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNGLHKEYPFYDWNSNKGYPTKKHRAAIREYGTTPYHRMTFNLL 191 >gi|329850294|ref|ZP_08265139.1| ribonuclease HII family protein [Asticcacaulis biprosthecum C19] gi|328840609|gb|EGF90180.1| ribonuclease HII family protein [Asticcacaulis biprosthecum C19] Length = 204 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 89/200 (44%), Positives = 115/200 (57%), Gaps = 5/200 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E + V G+DE GRG AGP+ VAA+ILDP P GI+DSK ++ +R + Sbjct: 3 DFSHEQRIA----GLVCGVDEAGRGPCAGPLCVAAVILDPARTPEGIDDSKALTEARRFQ 58 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L I +AI S+ + S ID NI ATL+ + AV L ALIDG P+ L Sbjct: 59 LEPLIKHAAIAWSVITMSTDDIDSMNILAATLEGMSRAVMALNPNAHHALIDGNRCPKQL 118 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A AVI GD++SLSIAAASI+AK RDR+M YP YGF H GY T H + ++ Sbjct: 119 SISATAVIGGDALSLSIAAASILAKTARDRIMIELDAVYPQYGFKRHKGYQTGAHLEALR 178 Query: 190 EKGPSCIHRLTFRPLRNLSV 209 GPS +HR ++ LR LS+ Sbjct: 179 VHGPSPVHRKSWATLRQLSL 198 >gi|325133106|gb|EGC55778.1| ribonuclease HII [Neisseria meningitidis M6190] Length = 194 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 81/182 (44%), Positives = 106/182 (58%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I + A +A Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKNQAAAWHVAA 65 Query: 87 -SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 ATPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHLGIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NL 207 NL Sbjct: 186 NL 187 >gi|300113760|ref|YP_003760335.1| ribonuclease H [Nitrosococcus watsonii C-113] gi|299539697|gb|ADJ28014.1| Ribonuclease H [Nitrosococcus watsonii C-113] Length = 195 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 82/183 (44%), Positives = 110/183 (60%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG LAGPV+ A+ILDP G+ DSK+++ RE L I AI ++ Sbjct: 10 IAGVDEVGRGPLAGPVIAGAVILDPERPISGVKDSKQLTAPARERLAALIQVQAIAWALG 69 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI +A+L A+ A+ L V+P L+DGR P + C A++KGD + Sbjct: 70 RAEAVEIDQLNIFQASLLAMERAIAALSVVPDLVLVDGRHCPLTV-CPVRAIVKGDQRVM 128 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I AASI+AKV RD M + YP YGF +H GYPT H +K GP IHR +FRP+ Sbjct: 129 AIGAASIVAKVARDAEMIAFEESYPGYGFGTHKGYPTRAHLAALKALGPCSIHRRSFRPV 188 Query: 205 RNL 207 R Sbjct: 189 RRF 191 >gi|325954163|ref|YP_004237823.1| ribonuclease H [Weeksella virosa DSM 16922] gi|323436781|gb|ADX67245.1| Ribonuclease H [Weeksella virosa DSM 16922] Length = 199 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 71/182 (39%), Positives = 103/182 (56%), Gaps = 1/182 (0%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 NM G DE GRG LAGPV+ AA++ I DSK ++ KR L E I ++ + Sbjct: 7 NMDYECGCDEAGRGCLAGPVIAAAVVFPNEFFDSTIIDSKLLTKIKRNNLRELINTNVLT 66 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I +Q ID+ NI A+ +A++ A+ L + P ++DG ++KGD Sbjct: 67 AEIGFVDNQEIDELNILNASFEAMHRAINKLSIEPDFIIVDGNRFKPYKNIPHECIVKGD 126 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + +SIAAASI+AK RD M+ HK+YP Y +D + GYPT +H++ I+E G S HR + Sbjct: 127 AKYISIAAASILAKTYRDEYMQKIHKEYPMYHWDKNKGYPTKQHREAIREFGVSPYHRTS 186 Query: 201 FR 202 FR Sbjct: 187 FR 188 >gi|256847171|ref|ZP_05552617.1| ribonuclease HII [Lactobacillus coleohominis 101-4-CHN] gi|256715835|gb|EEU30810.1| ribonuclease HII [Lactobacillus coleohominis 101-4-CHN] Length = 259 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 81/195 (41%), Positives = 117/195 (60%), Gaps = 3/195 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F+ E + + VAG+DEVGRG LAGPVV A+ILD + DSK +S ++RE Sbjct: 60 RFKYERALWQAGNQYVAGMDEVGRGPLAGPVVTCAVILDDRFDLVEVTDSKMLSRRERER 119 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY +I A+ +SI+ S ID+ NI++AT DA+ AV L+ P ++D +P L Sbjct: 120 LYLRIVDEAVEVSIAVNSPAVIDQLNIYRATQDAMIRAVHELRHQPSHLIVDA--VPLSL 177 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +IKGD S+S+AAASI+AK RD LM + YP Y F++++GY T +H ++ Sbjct: 178 SIPQTTLIKGDQKSISVAAASIVAKEYRDHLMADYARLYPGYDFENNMGYGTKQHLAGLE 237 Query: 190 EKGPSCIHRLTFRPL 204 + G + IHR TF P+ Sbjct: 238 KHGVTPIHRRTFAPV 252 >gi|56551900|ref|YP_162739.1| ribonuclease H [Zymomonas mobilis subsp. mobilis ZM4] gi|81355085|sp|Q5NNT2|RNH2_ZYMMO RecName: Full=Ribonuclease HII; Short=RNase HII gi|56543474|gb|AAV89628.1| Ribonuclease H [Zymomonas mobilis subsp. mobilis ZM4] Length = 215 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 87/202 (43%), Positives = 123/202 (60%), Gaps = 9/202 (4%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P E + V G+DEVGRG LAGPV+ A+ L +IP GINDSKK++ ++R Sbjct: 14 PDLSYEDRIE----GVVFGVDEVGRGPLAGPVMAGAVYLHREHIPEGINDSKKLTARRRH 69 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL----QVIPRSALIDGRSI 125 L + + + A + A ID+ NI +A+L A+ AVE L P L+DGR I Sbjct: 70 LLSDMLHNQADYATGMADVHEIDRINIRQASLLAMKRAVEALIQKIGREPDCILVDGRDI 129 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P D P + +IKGDS+SLSIAAASI+AKV RD +M A ++YP YG++ ++GYPT +H+ Sbjct: 130 P-DWPWPSLPIIKGDSLSLSIAAASIVAKVERDEIMVKASQEYPGYGWEHNMGYPTKEHR 188 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 + I+ P+ HR +F P+R Sbjct: 189 EAIQRLKPTKFHRRSFSPIRQF 210 >gi|313675462|ref|YP_004053458.1| RNAse hii [Marivirga tractuosa DSM 4126] gi|312942160|gb|ADR21350.1| RNase HII [Marivirga tractuosa DSM 4126] Length = 209 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 84/192 (43%), Positives = 115/192 (59%), Gaps = 2/192 (1%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 KN AG DEVGRG LAGPVV +A+IL N + DSKK+S KKR EL + I + Sbjct: 8 NKNNKFEAGCDEVGRGCLAGPVVASAVILPTNFSHPYLTDSKKLSAKKRAELVDVIKKES 67 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 I +I+ S + ID+ NI KA+ A++ A++ L+ P L+DG VIK Sbjct: 68 IAWAIAECSPEEIDQVNILKASFWAMHKALDQLKQKPDFLLVDGNRFTPYPEIPHECVIK 127 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GDS SIAAASI+AK RD LMR + +P YG++ +VGYPT +H+ I++ G + HR Sbjct: 128 GDSKYFSIAAASILAKEYRDNLMRDLAEIHPHYGWERNVGYPTKQHRAGIQKFGATEHHR 187 Query: 199 LTFRPL-RNLSV 209 +F+ L R L + Sbjct: 188 KSFQLLPRQLEI 199 >gi|300024712|ref|YP_003757323.1| ribonuclease H [Hyphomicrobium denitrificans ATCC 51888] gi|299526533|gb|ADJ25002.1| Ribonuclease H [Hyphomicrobium denitrificans ATCC 51888] Length = 274 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 81/200 (40%), Positives = 113/200 (56%), Gaps = 2/200 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 R E + + + VAG+DE G LAGPV AA+I P ++DSKK+ R Sbjct: 58 RKLLRFETSLWKTGVQFVAGVDEAGMSPLAGPVSAAAVIFAPGTRIADVDDSKKLDAATR 117 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + L +I ++AI S+ A + ID+ NI+ A L A+ AVE L P+ LID R I + Sbjct: 118 DRLAIEIKATAIAWSVGFAEVEEIDRINIYWAGLLAMRRAVEGLATQPQHVLIDARRI-K 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 DL ++KGD+ SL+IAAASI+AK RD LMR +P YGF H GYP +H Sbjct: 177 DLAIPQQPIVKGDAKSLTIAAASILAKTARDALMRKLDGDHPGYGFSKHKGYPVREHLAA 236 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 + + G S +HR +F P+R + Sbjct: 237 LTKLGASPVHRRSFAPVRAV 256 >gi|241668184|ref|ZP_04755762.1| ribonuclease HII [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876719|ref|ZP_05249429.1| ribonuclease HII [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842740|gb|EET21154.1| ribonuclease HII [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 185 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 80/185 (43%), Positives = 115/185 (62%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 + GIDE GRG L+GPVV A +ILDP G++DSKK++ KKR+ LYE IT+ A + Sbjct: 1 MIILGIDEAGRGPLSGPVVAAGVILDPEKTIDGLSDSKKLTEKKRQSLYEVITAHAKAYT 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I S Q ID+ NI +ATL A+ +NL+ L+DG +P + + A++KGDS Sbjct: 61 IVEVSPQQIDQLNILQATLKAMNQVADNLKGQFDKVLVDGNKLP-NWDYNSEAIVKGDSK 119 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKV RD + + +P YGF H GYPT +H + I++ G IHR +++ Sbjct: 120 VQEISAASILAKVHRDNICLEHDRLFPQYGFAKHKGYPTKEHLENIRKYGVLNIHRKSYK 179 Query: 203 PLRNL 207 P++ L Sbjct: 180 PIQLL 184 >gi|73748590|ref|YP_307829.1| ribonuclease HII [Dehalococcoides sp. CBDB1] gi|97182414|sp|Q3ZXD6|RNH2_DEHSC RecName: Full=Ribonuclease HII; Short=RNase HII gi|73660306|emb|CAI82913.1| ribonuclease HII [Dehalococcoides sp. CBDB1] Length = 212 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 83/202 (41%), Positives = 115/202 (56%), Gaps = 5/202 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHK 66 P E ++R++ +AG+DE GRG LAGPVV A+I+ P + + DSK +S Sbjct: 8 PSRAEEKLLRKQGFILIAGLDEAGRGCLAGPVVAGAVIMPPRLKGDWVEMVRDSKVLSPA 67 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KRE LY I S A+ + + ++ ID I AT A+ AVE+L P L+D + Sbjct: 68 KREYLYCHIVSMAVTFGVGAVDNEQIDSMGIAPATRLAMKQAVEDLTCQPDFLLVDYLKL 127 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P D+P ++ GD++ SIA ASI+AKV+RDRLM +YP Y H GY TA H Sbjct: 128 P-DIPLPQKGIVNGDALCFSIACASIVAKVSRDRLMSKLDMEYPGYYLAKHKGYGTALHV 186 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 + I +KG S IHR TF PL+ + Sbjct: 187 ECICQKGISPIHRRTFAPLKGM 208 >gi|189464553|ref|ZP_03013338.1| hypothetical protein BACINT_00896 [Bacteroides intestinalis DSM 17393] gi|189438343|gb|EDV07328.1| hypothetical protein BACINT_00896 [Bacteroides intestinalis DSM 17393] Length = 201 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 105/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ +R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEHQRYALREVIEKEALAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NI A+ A++ AV+ L++ P+ LIDG + V+KGD LS Sbjct: 73 VSPEEIDKINILNASFLAMHRAVDQLKMRPQHLLIDGNRFKKYQDLPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H++YP Y ++ + GYPT KH+ I E+G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPYYDWNHNKGYPTKKHRATIAERGTTPYHRMTFNLL 191 >gi|134094574|ref|YP_001099649.1| ribonuclease HII [Herminiimonas arsenicoxydans] gi|189043605|sp|A4G4T5|RNH2_HERAR RecName: Full=Ribonuclease HII; Short=RNase HII gi|133738477|emb|CAL61522.1| Ribonuclease HII (RNase HII) [Herminiimonas arsenicoxydans] Length = 211 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 114/184 (61%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + G+DE GRG LAGPV AA+ILDP G+ DSKK+S +R+ L I + A+ SI Sbjct: 19 IICGVDEAGRGPLAGPVFAAAVILDPMRPIDGLCDSKKLSEVRRDALAIDIKAHALSWSI 78 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S Q ID NI +AT+ A+ AVE L + P ALIDG P + +A A+IKGD Sbjct: 79 AQCSEQEIDSLNILQATMLAMRRAVEGLHIQPTLALIDGNRCPVMV-VRAEAIIKGDDKV 137 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AK RD + + H YP Y FD H GYPTA H + ++E G S +HR ++ P Sbjct: 138 QAISAASILAKTARDHALGLLHIAYPHYAFDQHKGYPTALHLERLREHGVSPVHRKSYAP 197 Query: 204 LRNL 207 +R L Sbjct: 198 VRAL 201 >gi|254373232|ref|ZP_04988721.1| ribonuclease HII [Francisella tularensis subsp. novicida GA99-3549] gi|151570959|gb|EDN36613.1| ribonuclease HII [Francisella novicida GA99-3549] Length = 185 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 80/185 (43%), Positives = 116/185 (62%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 + GIDE GRG L+GPVV A +ILD + I G+ DSKK++ KKR+ LY++I + A + Sbjct: 1 MIILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYT 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I S Q ID+ NI +ATL A++ NL+ L+DG +P + + A++KGDS Sbjct: 61 IVEISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWNYNSEAIVKGDSK 119 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 + I+AASI+AKV RD + + YP YGF H GYPT +H + IK+ G IHR +++ Sbjct: 120 IIEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYK 179 Query: 203 PLRNL 207 P++ L Sbjct: 180 PIQLL 184 >gi|241761783|ref|ZP_04759869.1| Ribonuclease H [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373697|gb|EER63257.1| Ribonuclease H [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 215 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 87/202 (43%), Positives = 124/202 (61%), Gaps = 9/202 (4%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P E + V G+DEVGRG LAGPV+ A+ L +IP GINDSKK++ ++R Sbjct: 14 PDLSYEDRIE----GVVFGVDEVGRGPLAGPVMAGAVYLHREHIPEGINDSKKLTARRRH 69 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL----QVIPRSALIDGRSI 125 L + + + A + A+ ID+ NI +A+L A+ AVE L P L+DGR I Sbjct: 70 LLSDMLHNQADYATGMANVHEIDRINIRQASLLAMKRAVEALIQKIGREPDCILVDGRDI 129 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P D P + +IKGDS+SLSIAAASI+AKV RD +M A ++YP YG++ ++GYPT +H+ Sbjct: 130 P-DWPWPSLPIIKGDSLSLSIAAASIVAKVERDEIMVKASQEYPGYGWEHNMGYPTKEHR 188 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 + I+ P+ HR +F P+R Sbjct: 189 EAIQRLKPTKFHRRSFSPIRQF 210 >gi|46201021|ref|ZP_00055903.2| COG0164: Ribonuclease HII [Magnetospirillum magnetotacticum MS-1] Length = 201 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 88/200 (44%), Positives = 118/200 (59%), Gaps = 9/200 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKIS 64 P LE+ + V GIDEVGRG LAGPVV AA+ILD +P ++DSKK+S Sbjct: 1 MPDLALESEIG----GIVCGIDEVGRGPLAGPVVAAAVILDAARLPKALLDRLDDSKKLS 56 Query: 65 HKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 + REEL E + ++A I AS ID+ NI +AT A+ A + L AL+DG Sbjct: 57 KRNREELAELVPATATIGFGEASVDEIDRLNILQATFLAMRRAYDALGRECGHALVDGNR 116 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 P LPC V+ GD ISLSIAAAS++AKV RD LM +P++G++ + GY TA+H Sbjct: 117 -PPRLPCPIRCVVGGDGISLSIAAASVVAKVRRDGLMAELALAHPEFGWERNAGYGTAEH 175 Query: 185 QQVIKEKGPSCIHRLTFRPL 204 +K GP+ HR +F P+ Sbjct: 176 LDALKRLGPTPHHRRSFAPV 195 >gi|300311507|ref|YP_003775599.1| ribonuclease HII protein [Herbaspirillum seropedicae SmR1] gi|300074292|gb|ADJ63691.1| ribonuclease HII protein [Herbaspirillum seropedicae SmR1] Length = 210 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 78/184 (42%), Positives = 116/184 (63%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + G+DE GRG LAGPV AA+ILDP G+ DSKK++ R+ L +I +SA+ ++ Sbjct: 19 IICGVDEAGRGPLAGPVFAAAVILDPARPVKGLRDSKKLTEAARDSLALEIKASALAWAV 78 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +S + Q ID+ NI A++ A+ AVE L +P ALIDG P + ++ A++KGD Sbjct: 79 ASCNEQEIDELNILHASMLAMRRAVEALSTLPTLALIDGNRCPV-MSIRSEAIVKGDDKV 137 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AK RD + + H YP YGFD H GYPT H ++++ G S +HR ++ P Sbjct: 138 PAISAASILAKTARDAALMVLHDTYPHYGFDRHKGYPTPLHLEMLRLHGVSPVHRRSYAP 197 Query: 204 LRNL 207 ++ L Sbjct: 198 VKAL 201 >gi|89256503|ref|YP_513865.1| ribonuclease HII [Francisella tularensis subsp. holarctica LVS] gi|115314935|ref|YP_763658.1| ribonuclease HII [Francisella tularensis subsp. holarctica OSU18] gi|156502614|ref|YP_001428679.1| ribonuclease HII [Francisella tularensis subsp. holarctica FTNF002-00] gi|254367835|ref|ZP_04983855.1| ribonuclease HII [Francisella tularensis subsp. holarctica 257] gi|290953972|ref|ZP_06558593.1| ribonuclease HII [Francisella tularensis subsp. holarctica URFT1] gi|295312649|ref|ZP_06803399.1| ribonuclease HII [Francisella tularensis subsp. holarctica URFT1] gi|122325051|sp|Q0BLL3|RNH2_FRATO RecName: Full=Ribonuclease HII; Short=RNase HII gi|122500629|sp|Q2A337|RNH2_FRATH RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225186|sp|A7NCM0|RNH2_FRATF RecName: Full=Ribonuclease HII; Short=RNase HII gi|89144334|emb|CAJ79621.1| Ribonuclease HII [Francisella tularensis subsp. holarctica LVS] gi|115129834|gb|ABI83021.1| ribonuclease H [Francisella tularensis subsp. holarctica OSU18] gi|134253645|gb|EBA52739.1| ribonuclease HII [Francisella tularensis subsp. holarctica 257] gi|156253217|gb|ABU61723.1| ribonuclease HII [Francisella tularensis subsp. holarctica FTNF002-00] Length = 187 Score = 244 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 81/185 (43%), Positives = 116/185 (62%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 + GIDE GRG L+GPVV A +ILD + I G+ DSKK++ KKR+ LY++I + A + Sbjct: 1 MIILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYT 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I S Q ID+ NI +ATL AI+ NL+ L+DG +P + + A++KGDS Sbjct: 61 IVEISPQQIDELNILQATLKAIHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSK 119 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 + I+AASI+AKV RD + + YP YGF H GYPT +H + IK+ G IHR +++ Sbjct: 120 IIEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYK 179 Query: 203 PLRNL 207 P++ L Sbjct: 180 PVQVL 184 >gi|187931769|ref|YP_001891754.1| ribonuclease HII [Francisella tularensis subsp. mediasiatica FSC147] gi|238691569|sp|B2SGW7|RNH2_FRATM RecName: Full=Ribonuclease HII; Short=RNase HII gi|187712678|gb|ACD30975.1| ribonuclease HII [Francisella tularensis subsp. mediasiatica FSC147] Length = 187 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 79/185 (42%), Positives = 116/185 (62%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 + GIDE GRG L+GPVV A +ILD + I G+ DSKK++ KKR+ LY++I + A + Sbjct: 1 MIILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYT 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I + Q ID+ NI +ATL A++ NL+ L+DG +P + + A++KGDS Sbjct: 61 IVEINPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSK 119 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 + I+AASI+AKV RD + + YP YGF H GYPT +H + IK+ G IHR +++ Sbjct: 120 IIEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYK 179 Query: 203 PLRNL 207 P++ L Sbjct: 180 PVQVL 184 >gi|118497878|ref|YP_898928.1| ribonuclease HII [Francisella tularensis subsp. novicida U112] gi|194323851|ref|ZP_03057627.1| ribonuclease HII [Francisella tularensis subsp. novicida FTE] gi|166225187|sp|A0Q7F9|RNH2_FRATN RecName: Full=Ribonuclease HII; Short=RNase HII gi|118423784|gb|ABK90174.1| ribonuclease HII [Francisella novicida U112] gi|194322215|gb|EDX19697.1| ribonuclease HII [Francisella tularensis subsp. novicida FTE] Length = 185 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 80/185 (43%), Positives = 116/185 (62%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 + GIDE GRG L+GPVV A +ILD + I G+ DSKK++ KKR+ LY++I + A + Sbjct: 1 MIILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYT 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I S Q ID+ NI +ATL A++ NL+ L+DG +P + + A++KGDS Sbjct: 61 IVEISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSK 119 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 + I+AASI+AKV RD + + YP YGF H GYPT +H + IK+ G IHR +++ Sbjct: 120 IIEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYK 179 Query: 203 PLRNL 207 P++ L Sbjct: 180 PIQLL 184 >gi|269959037|ref|YP_003328826.1| ribonuclease HII [Anaplasma centrale str. Israel] gi|269848868|gb|ACZ49512.1| ribonuclease HII [Anaplasma centrale str. Israel] Length = 223 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 87/202 (43%), Positives = 121/202 (59%), Gaps = 3/202 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHK 66 P F +E ++ + + G+DEVG GA+AGPVV AA+ L I DSK +S K Sbjct: 1 MPSFAIEDQLKSDTISVIVGVDEVGYGAIAGPVVAAAVYLPEREHGYIGDIKDSKMLSPK 60 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 KR+EL+ KI S A + A I+KHNI A+ ++ A++NL V L+DG P Sbjct: 61 KRDELFCKIVSHAKYGVGFARVCEIEKHNILVASHISMKRALQNLGVKADLVLVDGSRTP 120 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 +LP ++ GDSIS SIAAASI+AKVTRDR M+ H+++P+YG++ + GY T H Sbjct: 121 -NLPWAIKTIVGGDSISTSIAAASIVAKVTRDRFMKRLHEQHPEYGWNQNCGYGTKAHMI 179 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 IK G + HR TF P++ LS Sbjct: 180 SIKLHGKTTHHRSTFAPVKQLS 201 >gi|148656899|ref|YP_001277104.1| ribonuclease HII [Roseiflexus sp. RS-1] gi|189043651|sp|A5UX01|RNH2_ROSS1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|148569009|gb|ABQ91154.1| Ribonuclease H [Roseiflexus sp. RS-1] Length = 227 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 90/201 (44%), Positives = 120/201 (59%), Gaps = 7/201 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN-----NIPFGINDSKKIS 64 P E E +R +AG+DE GRG LAGPVV AA+IL ++ G+ DSK +S Sbjct: 6 PTVEEERALRAAGYRAIAGLDEAGRGCLAGPVVAAAVILPDAVIDTPDVLDGVADSKMLS 65 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +R +L+E+ITS A+ ++ + ID H I AT A+ A+ L + LID Sbjct: 66 PAQRADLFERITSLAVAWAVGATPAHIIDSHGILPATRLAMQVALLRLPRPADALLIDAV 125 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 ++ ++ P A+IKGD+ LSIAAASIIAKVTRDRLM +P YGF SH GY T + Sbjct: 126 TL-DNWPLPQRALIKGDARCLSIAAASIIAKVTRDRLMDALDACWPQYGFASHKGYGTVQ 184 Query: 184 HQQVIKEKGPSCIHRLTFRPL 204 HQQ ++ GP+ HR TFRPL Sbjct: 185 HQQALRRYGPTPHHRRTFRPL 205 >gi|308048683|ref|YP_003912249.1| RNase HII [Ferrimonas balearica DSM 9799] gi|307630873|gb|ADN75175.1| RNase HII [Ferrimonas balearica DSM 9799] Length = 191 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 114/184 (61%), Gaps = 1/184 (0%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S K+RE LY +I A+ Sbjct: 3 RLIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLRDSKKLSEKRREALYHEIREKALAWC 62 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 ++ AS ID+ NI AT+ A+ AV L V P +DG P+ A A++KGD Sbjct: 63 VARASVAEIDQLNILHATMLAMQRAVAGLPVQPDFVRVDGNRCPDFGGIGAEALVKGDDK 122 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKVTRD M+ +++P YGF +H GYPTA H + E G HR +F+ Sbjct: 123 EPAISAASILAKVTRDEEMKALDQRHPQYGFANHKGYPTAAHLAALAEHGALPEHRTSFK 182 Query: 203 PLRN 206 P+R Sbjct: 183 PVRR 186 >gi|167627613|ref|YP_001678113.1| ribonuclease HII [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189043598|sp|B0TYD6|RNH2_FRAP2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|167597614|gb|ABZ87612.1| Ribonuclease H [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 185 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 80/185 (43%), Positives = 114/185 (61%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 + GIDE GRG L+GPVV A +ILDP G+ DSKK++ KKR+ LYE IT+ A + Sbjct: 1 MIILGIDEAGRGPLSGPVVAAGVILDPEKTIDGLADSKKLTEKKRQSLYEVITAHAKAYT 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I S Q ID+ NI +ATL A+ +NL+ L+DG +P + + A++KGDS Sbjct: 61 IVEVSPQQIDQLNILQATLKAMNQVADNLKGQFDKVLVDGNKLP-NWDYNSEAIVKGDSK 119 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKV RD + + +P YGF H GYPT +H + I++ G IHR +++ Sbjct: 120 VQEISAASILAKVHRDNICLEHDRLFPQYGFAKHKGYPTKEHLENIRKYGVLNIHRKSYK 179 Query: 203 PLRNL 207 P++ L Sbjct: 180 PIQLL 184 >gi|314936593|ref|ZP_07843940.1| ribonuclease HII [Staphylococcus hominis subsp. hominis C80] gi|313655212|gb|EFS18957.1| ribonuclease HII [Staphylococcus hominis subsp. hominis C80] Length = 255 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 81/196 (41%), Positives = 117/196 (59%), Gaps = 4/196 (2%) Query: 14 LEAMVREKN-MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + N + GIDEVGRG LAGPVV A+IL+ + G++DSKK+S KR+ L Sbjct: 61 YENKILKDNPNALICGIDEVGRGPLAGPVVACAVILNKEHQYLGLDDSKKVSATKRKILN 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E++ + AS + ID+ NI+ AT A+ A+ L+ P LID ++ +P Sbjct: 121 EQLKEGVYDYAYGIASAEEIDEFNIYNATKLAMERAINQLKQQPNHLLIDAMTLDNAMP- 179 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASI+AK RD LM KYP Y F+ +VGY T H Q +K+ Sbjct: 180 -QTSIIKGDAKSVSIAAASIMAKEYRDGLMAEVALKYPGYDFEKNVGYGTKSHLQGLKQL 238 Query: 192 GPSCIHRLTFRPLRNL 207 G + HR TF P++++ Sbjct: 239 GITPYHRKTFEPVKSM 254 >gi|261378092|ref|ZP_05982665.1| ribonuclease HII [Neisseria cinerea ATCC 14685] gi|269145542|gb|EEZ71960.1| ribonuclease HII [Neisseria cinerea ATCC 14685] Length = 194 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 80/182 (43%), Positives = 105/182 (57%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L + I A +A Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAKMIKEQAAAWHVAA 65 Query: 87 -SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 ATPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLGIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NL 207 NL Sbjct: 186 NL 187 >gi|262382588|ref|ZP_06075725.1| ribonuclease HII [Bacteroides sp. 2_1_33B] gi|262295466|gb|EEY83397.1| ribonuclease HII [Bacteroides sp. 2_1_33B] Length = 199 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 78/185 (42%), Positives = 104/185 (56%), Gaps = 2/185 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK++S KKR +L I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVFAAAVILPEDFKNQNLNDSKQLSEKKRYKLRPVIEREAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NI KA+ A++ A+E L+V P LIDG V+KGD LS Sbjct: 73 VSPEEIDKINILKASFLAMHRAIEQLKVRPEHLLIDGNRFTPYPDIPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL- 204 IAAAS++AK RD M +YP Y + + GYPT H++ I+E G + HR TF L Sbjct: 133 IAAASVLAKTYRDDYMNELALEYPAYHWLDNKGYPTKAHREAIRECGITPYHRKTFTLLP 192 Query: 205 RNLSV 209 L++ Sbjct: 193 EQLTL 197 >gi|157803394|ref|YP_001491943.1| ribonuclease HII [Rickettsia canadensis str. McKiel] gi|166226648|sp|A8EXS5|RNH2_RICCK RecName: Full=Ribonuclease HII; Short=RNase HII gi|157784657|gb|ABV73158.1| ribonuclease HII [Rickettsia canadensis str. McKiel] Length = 196 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 91/191 (47%), Positives = 120/191 (62%), Gaps = 5/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E +E + VAGIDE GRG LAGPVV +A+++D NI GI DSKK+S +KRE L Sbjct: 6 LQYEKKYQE---YIVAGIDEAGRGPLAGPVVASAVVIDNTNIITGIKDSKKLSKRKRELL 62 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 YE+ITS+ I S + SH ID+ NI +AT A A NL + P L+DG D Sbjct: 63 YEQITSNYIWSTAIISHTEIDEINILEATKKACSIAAANLTIKPEIVLVDGNMQFND--K 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++IKGD++SLSIAAASI+AK+TRDRLM ++P Y + + GY T +H Q I Sbjct: 121 RFVSIIKGDNLSLSIAAASIVAKITRDRLMLDLSTEFPQYLWYKNSGYGTKEHIQAINTH 180 Query: 192 GPSCIHRLTFR 202 G S HR +FR Sbjct: 181 GLSPYHRKSFR 191 >gi|312130977|ref|YP_003998317.1| rnase hii [Leadbetterella byssophila DSM 17132] gi|311907523|gb|ADQ17964.1| RNase HII [Leadbetterella byssophila DSM 17132] Length = 192 Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats. Identities = 76/177 (42%), Positives = 112/177 (63%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG LAGPVV AA+IL P +NDSK++S + R +L +I + A+ ++ Sbjct: 13 AGVDEAGRGCLAGPVVAAAVILPPGYENEWLNDSKQLSKEDRNQLRTEIENIAVAFAVGQ 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ASH+ IDK NI +A+ A++ A+E L P LIDG ++KGD+ ++ Sbjct: 73 ASHEEIDKINILQASFLAMHRAIEQLSTRPDHLLIDGNRFSPYPLIPHTCIVKGDAKFMN 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD +M I ++YP Y ++++ GYPT H++ I+E G + HR+TFR Sbjct: 133 IAAASILAKTYRDEIMEILSQEYPQYKWEANAGYPTIFHRKAIQEHGFTPYHRMTFR 189 >gi|167463784|ref|ZP_02328873.1| Ribonuclease H [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382568|ref|ZP_08056448.1| ribonuclease HII-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153484|gb|EFX45889.1| ribonuclease HII-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 227 Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats. Identities = 88/197 (44%), Positives = 115/197 (58%), Gaps = 5/197 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + +AGIDEVGRG L G VV AA+IL ++ INDSKK++ KKRE L Sbjct: 27 LQKEKELWAAGYTAIAGIDEVGRGCLFGDVVAAAVILPADSYIEEINDSKKLTEKKREAL 86 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +E I + A+ + I Q I++ NI +A A+ AVE L + P LID + DL Sbjct: 87 FETIMNEAVAVGIGRVDVQTIERINIKQAARLAMKLAVEELALAPDYLLIDAEKV--DLS 144 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 AVI GD +S SIAAASI+AKVTRDRL YP YG H GY T +H++ I+ Sbjct: 145 FPQEAVIHGDELSQSIAAASIVAKVTRDRLCAEWDGLYPGYGIAGHKGYATKEHREQIRL 204 Query: 191 KGPSCIHRLTFRPLRNL 207 GP+ +HR F LRN+ Sbjct: 205 LGPTPLHRSLF--LRNI 219 >gi|288928610|ref|ZP_06422456.1| ribonuclease HII [Prevotella sp. oral taxon 317 str. F0108] gi|288329594|gb|EFC68179.1| ribonuclease HII [Prevotella sp. oral taxon 317 str. F0108] Length = 202 Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats. Identities = 68/182 (37%), Positives = 107/182 (58%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSKK++ K+R L +I + A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVFAAAVILPVDYENALLNDSKKLTEKQRYALRTQIETDALAWAVGE 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + IDK NI A++ A++ A++ L++ P++ ++DG ++KGD+ LS Sbjct: 73 VTADEIDKINILNASILAMHRALDGLKLRPQAVIVDGNRFKPYGTLPHETIVKGDAKFLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 IAAAS++AK RD M ++P Y +D + GYPT H+ I+E G S HR TF+ ++ Sbjct: 133 IAAASVLAKTYRDDYMNSLALQHPAYQWDVNKGYPTKAHRAAIEEHGISPFHRKTFKGVK 192 Query: 206 NL 207 + Sbjct: 193 EM 194 >gi|237716674|ref|ZP_04547155.1| ribonuclease HII [Bacteroides sp. D1] gi|262405448|ref|ZP_06081998.1| ribonuclease HII [Bacteroides sp. 2_1_22] gi|294646229|ref|ZP_06723883.1| ribonuclease HII [Bacteroides ovatus SD CC 2a] gi|294809104|ref|ZP_06767822.1| ribonuclease HII [Bacteroides xylanisolvens SD CC 1b] gi|229442657|gb|EEO48448.1| ribonuclease HII [Bacteroides sp. D1] gi|262356323|gb|EEZ05413.1| ribonuclease HII [Bacteroides sp. 2_1_22] gi|292638447|gb|EFF56811.1| ribonuclease HII [Bacteroides ovatus SD CC 2a] gi|294443658|gb|EFG12407.1| ribonuclease HII [Bacteroides xylanisolvens SD CC 1b] Length = 200 Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 103/179 (57%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL +NDSK++S K+R L E I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKGFKNELLNDSKQLSEKQRYALREVIEKEAIAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + ID+ NI +A+ A++ AV+ L P+ LIDG + V+KGD LS Sbjct: 73 VLPEEIDEINILRASFLAMHRAVDQLTTRPQHLLIDGNRFTKYPGIPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H+++P Y +D + GYPT KH+ I E+G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTFNLL 191 >gi|91775869|ref|YP_545625.1| RNase HII [Methylobacillus flagellatus KT] gi|123078856|sp|Q1H153|RNH2_METFK RecName: Full=Ribonuclease HII; Short=RNase HII gi|91709856|gb|ABE49784.1| RNase HII [Methylobacillus flagellatus KT] Length = 193 Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats. Identities = 78/184 (42%), Positives = 112/184 (60%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + G+DE GRG LAG V AA+ILDP + G+ DSK +S KKR+ L +I A+ +I Sbjct: 7 LICGVDEAGRGPLAGAVYAAAVILDPQHPIPGLADSKTLSEKKRDMLAIEIKQHALAWTI 66 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +S S + ID+ NI +A+L A+ A++ L ++P L+DG P + A ++KGDS Sbjct: 67 ASCSAEEIDEINILQASLLAMKRAIDQLTIMPTQVLVDGLHCP-GIAIPAQGIVKGDSKV 125 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 IAAASI+AK RD M H +YP Y F H GYPTA H +++ E G IHR ++ P Sbjct: 126 QEIAAASILAKTARDHEMVEMHARYPQYDFAKHKGYPTAHHLRLLAEHGACEIHRRSYAP 185 Query: 204 LRNL 207 ++ + Sbjct: 186 VKKV 189 >gi|147669350|ref|YP_001214168.1| ribonuclease H [Dehalococcoides sp. BAV1] gi|289432616|ref|YP_003462489.1| ribonuclease H [Dehalococcoides sp. GT] gi|189043591|sp|A5FR86|RNH2_DEHSB RecName: Full=Ribonuclease HII; Short=RNase HII gi|146270298|gb|ABQ17290.1| Ribonuclease H [Dehalococcoides sp. BAV1] gi|288946336|gb|ADC74033.1| Ribonuclease H [Dehalococcoides sp. GT] Length = 212 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 83/202 (41%), Positives = 115/202 (56%), Gaps = 5/202 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHK 66 P E ++R++ +AG+DE GRG LAGPVV A+I+ P + + DSK +S Sbjct: 8 PSRAEEKLLRKQGFILIAGLDEAGRGCLAGPVVAGAVIMPPRLKGDWVEMVRDSKVLSPA 67 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KRE LY I S A+ + + ++ ID I AT A+ AVE+L P L+D + Sbjct: 68 KREYLYCHIVSMAVTFGVGAVDNEQIDSMGIAPATRLAMKQAVEDLTCQPDFLLVDYLKL 127 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P D+P ++ GD++ SIA ASI+AKV+RDRLM +YP Y H GY TA H Sbjct: 128 P-DIPLPQKGIVDGDALCFSIACASIVAKVSRDRLMSKLDMEYPGYYLAKHKGYGTALHV 186 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 + I +KG S IHR TF PL+ + Sbjct: 187 ECICQKGISPIHRRTFAPLKGM 208 >gi|332188926|ref|ZP_08390627.1| ribonuclease HII family protein [Sphingomonas sp. S17] gi|332011037|gb|EGI53141.1| ribonuclease HII family protein [Sphingomonas sp. S17] Length = 198 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 79/185 (42%), Positives = 114/185 (61%), Gaps = 5/185 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 P+ G+DE GRG LAGPVV AA+IL + P GINDSKK++ K R L +I S AI+ + Sbjct: 8 MPLCGVDEAGRGPLAGPVVAAAVILPERDCPSGINDSKKLTEKTRARLCAEIRSCAIVGV 67 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVE----NLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 + ID+ NI+ AT+ A+ AV+ L P L+DG +P+ A A++ G Sbjct: 68 GVVEPEEIDRLNIYWATMKAMTLAVDAVVAGLGRAPAHVLVDGNRLPK-WGYTATAIVGG 126 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D+ SL+I AASI+AK RD +M A + +P YG+ S+ GY +A H ++E GP+ +HR Sbjct: 127 DAKSLAIGAASIVAKHVRDEMMIAAAEDWPAYGWHSNKGYGSATHLAALREHGPTPLHRR 186 Query: 200 TFRPL 204 +F P+ Sbjct: 187 SFAPV 191 >gi|89365772|dbj|BAE86854.1| RNase HII [Shewanella sp. SIB1] Length = 212 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 86/182 (47%), Positives = 116/182 (63%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG L G VV AA+ILDPN G+NDSKK+S K+R LY++I +A+ +S Sbjct: 22 GLVAGVDEVGRGPLIGDVVTAAVILDPNKPIVGLNDSKKLSEKRRNALYQQIMDNALSVS 81 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + AS ID+ NI AT+ A+ AV L ++P L+DG +P D + A+IKGD + Sbjct: 82 VGRASPAEIDELNILHATMLAMQRAVAGLSILPERVLVDGNRVP-DFGIASHAIIKGDGL 140 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASIIAKVTRD M + +YP YGF H GYPT H + + G HR +F+ Sbjct: 141 VAAISAASIIAKVTRDAEMDMLDSQYPQYGFAKHKGYPTKAHFEALALYGVLPEHRKSFK 200 Query: 203 PL 204 P+ Sbjct: 201 PV 202 >gi|218782471|ref|YP_002433789.1| ribonuclease H [Desulfatibacillum alkenivorans AK-01] gi|218763855|gb|ACL06321.1| Ribonuclease H [Desulfatibacillum alkenivorans AK-01] Length = 224 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 87/206 (42%), Positives = 120/206 (58%), Gaps = 5/206 (2%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 + + P + E +K +AG+DE GRG LAGPVV AA++L N G++DS Sbjct: 14 LLDRDAMKDP-WSFENEAHKKGYTRIAGVDEAGRGPLAGPVVSAAVVLPGNADLPGVDDS 72 Query: 61 KKISHKKREELYEKITSSAIISISSA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK++ KKR+ L+E I AI ID+ NI +A+L ++ +VENL+ P L Sbjct: 73 KKLTPKKRDALFESIYEQAIGIGIGIIDPVEIDRINILQASLLSMLVSVENLEPAPDYLL 132 Query: 120 IDG-RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 IDG I LP + GDS+S+SIAAASI+AKVTRDRLM +++P +GF H G Sbjct: 133 IDGPFGIKSFLP--QTPIKHGDSLSISIAAASIVAKVTRDRLMERYDQEFPAFGFAKHKG 190 Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPL 204 Y T H++ I GP IHR +FR + Sbjct: 191 YGTKAHREAISLNGPCSIHRFSFRGV 216 >gi|126728136|ref|ZP_01743952.1| ribonuclease HII [Sagittula stellata E-37] gi|126711101|gb|EBA10151.1| ribonuclease HII [Sagittula stellata E-37] Length = 219 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 86/195 (44%), Positives = 127/195 (65%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + + VAG+DEVGRG LAGPVV AA++L+ +IP G+NDSKK++ K+RE L Sbjct: 24 RFEEALWAQGVNRVAGVDEVGRGPLAGPVVAAAVVLNRASIPDGLNDSKKLTIKRREFLA 83 Query: 73 EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 + SA +SI AS + ID+ NI +A+L A+ AVE L P L+DG P + C Sbjct: 84 PLLWQSAEVSIGQASVEEIDETNILQASLLAMRRAVEGLPKPPDHLLVDGNRAPGGISCD 143 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A ++ GD S SIAAASI+AK+ RD +M+ A +YP YG++++ GYPT H+ ++ G Sbjct: 144 ATCIVGGDGRSPSIAAASIVAKIWRDDVMKRAATQYPGYGWETNAGYPTKCHKSALRNLG 203 Query: 193 PSCIHRLTFRPLRNL 207 + HR +F+P+R++ Sbjct: 204 ATPFHRRSFKPVRDI 218 >gi|295100799|emb|CBK98344.1| RNase HII [Faecalibacterium prausnitzii L2-6] Length = 214 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 85/191 (44%), Positives = 112/191 (58%), Gaps = 2/191 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + +A +R + AG+DE GRG L GPV VAA ILDP +GINDSKK+S KKRE L Sbjct: 14 YAYDADIRAQ-YGCFAGVDEAGRGPLCGPVCVAACILDPEAPVYGINDSKKLSEKKREAL 72 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +++I A+ I ID+ NI AT+ + AVE L ++P L+DG IP L Sbjct: 73 FDQIVEKALAYRIVFVGPDIIDRDNILNATMGGMRQAVEGLDIVPNLVLVDGNRIPAGLT 132 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A V+KGD+ S SI AASI+AKV+RDR M K+YP Y H GY T H ++I + Sbjct: 133 MPAQPVVKGDATSASIGAASILAKVSRDRYMLELDKQYPQYQLAKHKGYGTKLHYELIAQ 192 Query: 191 KGPSCIHRLTF 201 G +R +F Sbjct: 193 YGIQPFYRRSF 203 >gi|309379099|emb|CBX22230.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 194 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 79/182 (43%), Positives = 106/182 (58%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L + I + A +A Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAKIIKNQAAAWHVAA 65 Query: 87 S-HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + I NI AT+ A+ A++ L V P IDG IPE L A AV+KGDS + Sbjct: 66 AGPEEIASLNILHATMLAMKRAIDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NL 207 NL Sbjct: 186 NL 187 >gi|223938652|ref|ZP_03630542.1| Ribonuclease H [bacterium Ellin514] gi|223892640|gb|EEF59111.1| Ribonuclease H [bacterium Ellin514] Length = 245 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 81/204 (39%), Positives = 115/204 (56%), Gaps = 10/204 (4%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-------NDSKKI 63 E + ++ VAG+DE G G LAGPVV AA++ + + G+ NDSK++ Sbjct: 10 RLGFERELWQQGTTLVAGVDEAGCGPLAGPVVAAAVLFPCSWLEAGLFSKLRGLNDSKQL 69 Query: 64 SHKKREELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 +RE+ Y I + I +I+ + ID+ NI +A + A++ L P+ L+D Sbjct: 70 DEDQREKFYNIIVNHPEIRHAIAVIDVEMIDRINIRQAAWRGMNQALDQLNPKPQHVLVD 129 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 G I + LP A+++GD S SIAAAS++AKVTRDRLM+ K+YP YGF H GY T Sbjct: 130 GLKI-KWLPYAQTALVQGDGKSYSIAAASVLAKVTRDRLMQDYDKQYPGYGFAEHKGYGT 188 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLR 205 KH I +GP IHR +F P R Sbjct: 189 PKHLAAINAQGPCLIHRKSFAPFR 212 >gi|220906598|ref|YP_002481909.1| ribonuclease HII [Cyanothece sp. PCC 7425] gi|219863209|gb|ACL43548.1| Ribonuclease H [Cyanothece sp. PCC 7425] Length = 206 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 77/202 (38%), Positives = 121/202 (59%), Gaps = 3/202 (1%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKIS 64 + + P ++E ++ + GIDEVGRG L+GPVV AA++L G+ DSK +S Sbjct: 1 MVQIPDLQVEQTFWQRGQLRLVGIDEVGRGCLSGPVVAAAVLLPAYCEPIPGVRDSKTLS 60 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 ++R+ L +KI AI + I +AS I++ NI +AT A+ A++ + LIDGR Sbjct: 61 AQRRQVLDQKIRQQAIAVGIGAASVAEINQVNILQATYLAMQRALQRIGG-YDHLLIDGR 119 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P P A+++GD+ S +IA ASI+AKV RDR M+ ++YP YG++ +VGY T + Sbjct: 120 PVPVFEPEHHTAIVEGDASSYAIACASIVAKVRRDRFMQHLARRYPGYGWEQNVGYGTKQ 179 Query: 184 HQQVIKEKGPSCIHRLTFRPLR 205 H I G + HR +F+P++ Sbjct: 180 HLAAITSLGVTPHHRRSFKPVQ 201 >gi|332527884|ref|ZP_08403921.1| ribonuclease HII [Rubrivivax benzoatilyticus JA2] gi|332112461|gb|EGJ12254.1| ribonuclease HII [Rubrivivax benzoatilyticus JA2] Length = 214 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 87/205 (42%), Positives = 122/205 (59%), Gaps = 8/205 (3%) Query: 2 FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61 F + PE+ VAG+DE G G LAGPVV AA+ILD G+ DSK Sbjct: 6 FSKAAPEQLDLGW------HPPGLVAGVDEAGCGPLAGPVVAAAVILDDQAPIAGLADSK 59 Query: 62 KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 +S ++RE L+++I + A+ +SI+ AS + ID NI A L A+ AVE L+++P+ ++ Sbjct: 60 ALSARQRERLFDEIHARALCVSIALASVEEIDTLNILHARLLAMKRAVETLRLLPKRVMV 119 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG +P L A AV+ GD+ +I+AASI+AKV RDRL H ++PDYGFD H GYP Sbjct: 120 DGNRLPV-LRFPAEAVVGGDAKVPAISAASIVAKVHRDRLCAELHARWPDYGFDGHKGYP 178 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLR 205 T H ++ G HR +F P+R Sbjct: 179 TRVHLDALRRLGACPEHRRSFAPVR 203 >gi|297538517|ref|YP_003674286.1| Ribonuclease H [Methylotenera sp. 301] gi|297257864|gb|ADI29709.1| Ribonuclease H [Methylotenera sp. 301] Length = 194 Score = 243 bits (622), Expect = 8e-63, Method: Composition-based stats. Identities = 83/189 (43%), Positives = 116/189 (61%), Gaps = 6/189 (3%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + G DE GRG LAG V AA+IL+P+ G+ DSKK+S KKR+ L +I A+ +I Sbjct: 6 LICGADEAGRGPLAGAVYAAAVILNPDRPIIGLADSKKLSEKKRDLLSVEIKQYALAWAI 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVI----PRSALIDGRSIPEDLPCQAFAVIKG 139 +S S Q ID+ NI +A+L A+ A+E +QV P +DG P+ + A++KG Sbjct: 66 ASCSAQEIDEINILQASLLAMKRAIEAMQVQFGITPDLVQVDGNKCPK-ISLPCEAIVKG 124 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS +I+AASI+AKV RD + K YP YGF H GYPTA H Q++ G + +HRL Sbjct: 125 DSKVQAISAASILAKVARDAELYELDKIYPQYGFAKHKGYPTAFHLQMLDAHGVTPVHRL 184 Query: 200 TFRPLRNLS 208 ++ P+R LS Sbjct: 185 SYAPVRRLS 193 >gi|284032640|ref|YP_003382571.1| Ribonuclease H [Kribbella flavida DSM 17836] gi|283811933|gb|ADB33772.1| Ribonuclease H [Kribbella flavida DSM 17836] Length = 232 Score = 243 bits (622), Expect = 8e-63, Method: Composition-based stats. Identities = 76/198 (38%), Positives = 107/198 (54%), Gaps = 4/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKRE 69 + E +R + P+AG+DE GRG AGP+V AA+IL + DSK ++ K RE Sbjct: 17 YGYERALRRVGLDPIAGVDEAGRGPCAGPLVAAAVILPDGKRGQIPELADSKLLTAKARE 76 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 Y++I A+ S+ S D+ +H A + A+ A+ L V P+ L DG + + Sbjct: 77 RCYDEIRKRALAWSVVSIEADECDRLGMHVANVQALRRALFRLDVRPQYVLTDGFGV-DG 135 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L A+ KGD ++ IAAAS++AKVTRDR+M YP YGF H GY T +HQ + Sbjct: 136 LGVPGLAIWKGDRVAACIAAASVVAKVTRDRIMEHWDTVYPQYGFAIHKGYCTPEHQAAL 195 Query: 189 KEKGPSCIHRLTFRPLRN 206 E GP HR F +R Sbjct: 196 DEYGPCPQHRRRFENVRR 213 >gi|114797072|ref|YP_761434.1| ribonuclease HII [Hyphomonas neptunium ATCC 15444] gi|123128500|sp|Q0BYK9|RNH2_HYPNA RecName: Full=Ribonuclease HII; Short=RNase HII gi|114737246|gb|ABI75371.1| ribonuclease HIII [Hyphomonas neptunium ATCC 15444] Length = 207 Score = 243 bits (622), Expect = 8e-63, Method: Composition-based stats. Identities = 81/198 (40%), Positives = 105/198 (53%), Gaps = 15/198 (7%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + G+DE GRG AGPV AA+ILDP G+ DSKK+S K R+ L I A+ + Sbjct: 6 LIIGVDEAGRGPWAGPVTAAAVILDPAQPIEGLTDSKKLSEKARDRLAPLIRERALAWCV 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAV--------------ENLQVIPRSALIDGRSIPEDL 129 + AS + ID NI +AT A+ A+ E + LIDG ++P DL Sbjct: 66 AEASVEEIDTLNIRQATFLAMRRAILGQSRTDQDRSGQFETVSATAGLILIDGNALPGDL 125 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P A A+IKGD +I+AASI+AK RD M YP YGF H GY TA H + Sbjct: 126 PAPARAIIKGDLTEPAISAASILAKTHRDAQMASLCNLYPGYGFSGHKGYGTAAHAAALT 185 Query: 190 EKGPSCIHRLTFRPLRNL 207 GP +HR +F P+R L Sbjct: 186 RLGPCPVHRQSFAPVRAL 203 >gi|315924213|ref|ZP_07920439.1| ribonuclease HII [Pseudoramibacter alactolyticus ATCC 23263] gi|315622615|gb|EFV02570.1| ribonuclease HII [Pseudoramibacter alactolyticus ATCC 23263] Length = 262 Score = 243 bits (622), Expect = 8e-63, Method: Composition-based stats. Identities = 86/192 (44%), Positives = 115/192 (59%), Gaps = 3/192 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 H +E R + ++GIDEVGRG LAGPVV AA+IL + GI+DSKKIS K+RE Sbjct: 66 HQAIERAARAQGYALISGIDEVGRGPLAGPVVAAAVILPETSAIAGIDDSKKISAKRRET 125 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L I A+ I I + ID NI +AT A+ +AV L P LID +P + Sbjct: 126 LNAAIRDEALAIGIGVVDPETIDAMNILEATKLAMTNAVAQLVPRPDLLLIDALKLPSQI 185 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P Q AV+ GD+ I AASI+AKV RD LM+ + YP+YGF+ ++GY TA H + I+ Sbjct: 186 PVQ--AVVHGDARCYCIGAASIVAKVYRDHLMQEYARTYPEYGFERNMGYGTAAHIEAIQ 243 Query: 190 EKGPSCIHRLTF 201 GP+ +HR +F Sbjct: 244 TCGPTPVHRRSF 255 >gi|222100634|ref|YP_002535202.1| Ribonuclease [Thermotoga neapolitana DSM 4359] gi|221573024|gb|ACM23836.1| Ribonuclease [Thermotoga neapolitana DSM 4359] Length = 245 Score = 243 bits (622), Expect = 8e-63, Method: Composition-based stats. Identities = 85/192 (44%), Positives = 112/192 (58%), Gaps = 5/192 (2%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77 K VAGIDE GRG LAGPVV AA+IL+ + + DSK ++ K RE+L+++I Sbjct: 7 FYRKEYGVVAGIDEAGRGCLAGPVVAAAVILEYD--IEEVCDSKLLTSKTREKLFDEIME 64 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A + I A+ + ID NI AT A+ A+ENL V P +IDG+ + DL ++ Sbjct: 65 KAAVGIGMATPEEIDLQNIFNATKMAMNRALENLPVKPSFVIIDGKGL--DLGVPGTCLV 122 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD S I AASIIAKV RDRLM H YP++ F H GY T H I+ G +H Sbjct: 123 GGDRKSKLIGAASIIAKVVRDRLMEKLHDLYPEFSFHKHKGYATKDHLNEIRLHGVLPVH 182 Query: 198 RLTFRPL-RNLS 208 R++FRP+ NLS Sbjct: 183 RMSFRPVLENLS 194 >gi|281422598|ref|ZP_06253597.1| ribonuclease HII [Prevotella copri DSM 18205] gi|281403268|gb|EFB33948.1| ribonuclease HII [Prevotella copri DSM 18205] Length = 215 Score = 243 bits (622), Expect = 8e-63, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 105/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL P +NDSKK++ KKR+ L E+I A+ ++ Sbjct: 26 AGCDEAGRGCLAGSVYAAAVILPPGYQNAELNDSKKLTDKKRKALREQIERDAVAWAVGI 85 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + IDK NI A+ A++ A++ L+V P + ++DG ++KGD ++ Sbjct: 86 VTPEEIDKINILNASFLAMHRALDQLKVRPEAVIVDGNRFKPYKDLPYTTIVKGDGKYMA 145 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M ++YP Y + + GYPT KH+ I+E G + HR+++ L Sbjct: 146 IAAASILAKTYRDDYMDALAEEYPQYDWKGNKGYPTKKHRAAIREFGVTPYHRMSYNLL 204 >gi|78044826|ref|YP_360258.1| ribonuclease HII [Carboxydothermus hydrogenoformans Z-2901] gi|97182364|sp|Q3AC76|RNH2_CARHZ RecName: Full=Ribonuclease HII; Short=RNase HII gi|77996941|gb|ABB15840.1| ribonuclease HII [Carboxydothermus hydrogenoformans Z-2901] Length = 231 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 73/207 (35%), Positives = 123/207 (59%), Gaps = 4/207 (1%) Query: 2 FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61 N++P + ++E + VAG DE GRG +AGPVV A +++ P ++DSK Sbjct: 18 LDNNLPF--NLQIENQLFSSGYELVAGGDEAGRGPVAGPVVAAIVVIKPGIYIPEVDDSK 75 Query: 62 KISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K+S KKRE+L+E+I + S++ ID+ NI++AT A A+++L + P + ++ Sbjct: 76 KLSSKKREKLFEEIINLVTDWSVAVVGPDLIDRLNIYQATKFAFKAALDSLSIKPEALIL 135 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 D + + +++K D IS ++A ASI+AKV RD++M K +P YGF + GY Sbjct: 136 DALKL-TGFSGKQVSMVKADEISFAVACASILAKVIRDKIMEQYDKDFPGYGFKKNKGYL 194 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNL 207 T +H++ ++ GPS IHR +F P+++ Sbjct: 195 TREHREALELLGPSPIHRKSFEPIKSF 221 >gi|242373537|ref|ZP_04819111.1| ribonuclease HII [Staphylococcus epidermidis M23864:W1] gi|242348900|gb|EES40502.1| ribonuclease HII [Staphylococcus epidermidis M23864:W1] Length = 256 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 77/191 (40%), Positives = 114/191 (59%), Gaps = 3/191 (1%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77 + + + GIDEVGRG LAGPVV A+IL+ ++ G+NDSKK+ K+R L + + Sbjct: 66 LNHDSNALICGIDEVGRGPLAGPVVACAVILNKDHHYLGLNDSKKVPAKQRVALNNDLKA 125 Query: 78 SAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 + + AS + ID+ NI++AT A+ A+ L P LID + D+P ++ Sbjct: 126 GVLSYAYGIASSEEIDELNIYRATQVAMQRAIAQLDEQPTHLLIDAMKLDNDIP--QTSI 183 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD+ S+SIAAASI+AK RD M+ +PDYGF+ +VGY T +H + I G Sbjct: 184 IKGDAKSVSIAAASIMAKEYRDDYMKALANHFPDYGFEKNVGYGTKQHLEAIDTYGVINE 243 Query: 197 HRLTFRPLRNL 207 HR +F P+++L Sbjct: 244 HRKSFEPIKSL 254 >gi|90961695|ref|YP_535611.1| ribonuclease HII [Lactobacillus salivarius UCC118] gi|122449076|sp|Q1WU07|RNH2_LACS1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|90820889|gb|ABD99528.1| Ribonuclease HII [Lactobacillus salivarius UCC118] gi|300214494|gb|ADJ78910.1| Ribonuclease HII (RNase HII) [Lactobacillus salivarius CECT 5713] Length = 255 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 86/208 (41%), Positives = 135/208 (64%), Gaps = 3/208 (1%) Query: 3 CNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62 + + ++E + +K + +AG+DEVGRG LAGPVV AA+IL + F +NDSK+ Sbjct: 49 NEKLEFQNRLKIERDLWDKGIEYIAGVDEVGRGPLAGPVVTAAVILPHDFDVFEVNDSKQ 108 Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 +S KKREELY+KI A+ +S+ + + ID+ NI++AT A+ A+E+L + P+ ++D Sbjct: 109 LSEKKREELYKKILEKAVAVSVGLSDNNLIDEVNIYEATRLAMKQAIESLNITPQKIIVD 168 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 +I D +IKGD+ S S+AAASI+AKVTRD LM+ + YP YGF+ + GY T Sbjct: 169 AMTI--DTKIPQLRLIKGDAKSASVAAASIVAKVTRDHLMQFYARIYPGYGFEKNDGYGT 226 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNLSV 209 +H + ++ KG + IHR +F P++ + + Sbjct: 227 KQHLEGLENKGVTPIHRQSFEPVKKILL 254 >gi|319900379|ref|YP_004160107.1| RNase HII [Bacteroides helcogenes P 36-108] gi|319415410|gb|ADV42521.1| RNase HII [Bacteroides helcogenes P 36-108] Length = 201 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 104/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYLLREVIEKEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI A+ A++ A++ L V P+ LIDG + ++KGD LS Sbjct: 73 VSPEEIDRINILNASFLAMHRAIDGLSVHPQHLLIDGNRFKKYRDLPHTTIVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H++YP Y ++ + GYPT KH+ I +G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNGLHEEYPYYDWNHNKGYPTKKHRAAIAVRGTTPYHRMTFNLL 191 >gi|73541556|ref|YP_296076.1| ribonuclease HII [Ralstonia eutropha JMP134] gi|97189223|sp|Q470F1|RNH2_RALEJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|72118969|gb|AAZ61232.1| RNase HII [Ralstonia eutropha JMP134] Length = 218 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 79/188 (42%), Positives = 113/188 (60%), Gaps = 6/188 (3%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-I 81 + G+DE GRG LAGPV AA++ DP G+ DSK ++ KRE LY+KI A+ Sbjct: 23 RFLCGVDEAGRGPLAGPVYAAAVVFDPAKPMLRGLADSKVLTASKREALYDKICERALGW 82 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLPCQAFAVIK 138 I+ A+ + ID NI A++ A+ AV+ L V P +DG P+ +P A++K Sbjct: 83 HIAFATVEEIDTLNILHASMLAMQRAVQGLAEKGVTPDLVQVDGNRCPQ-VPFPVEAIVK 141 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GDS+ +I+AASI+AKV RDR + H+ YP YGFD+H GYPT +H + + G + HR Sbjct: 142 GDSLVKAISAASILAKVARDRELLTLHEVYPQYGFDAHSGYPTPQHLAALAQFGATPHHR 201 Query: 199 LTFRPLRN 206 +F P+R Sbjct: 202 RSFAPVRE 209 >gi|307565732|ref|ZP_07628201.1| ribonuclease HII [Prevotella amnii CRIS 21A-A] gi|307345558|gb|EFN90926.1| ribonuclease HII [Prevotella amnii CRIS 21A-A] Length = 200 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 103/179 (57%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL +NDSKK+S K R L + I +A+ +I Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPKTYCNEHLNDSKKLSSKTRYALRKDIELNAVAWAIGK 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI A++ A++ A++ L + P + +IDG +IKGD LS Sbjct: 73 VTPEEIDRINILNASILAMHRALDQLIIRPEAIIIDGNRFKPYHNIPYTTIIKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M KKYP Y ++ ++GYPT H+Q I + G + HR +F+ L Sbjct: 133 IAAASILAKTYRDDYMCTLAKKYPQYEWEHNMGYPTKAHRQAIAKYGITPYHRKSFKLL 191 >gi|282881109|ref|ZP_06289796.1| ribonuclease HII [Prevotella timonensis CRIS 5C-B1] gi|281304913|gb|EFA96986.1| ribonuclease HII [Prevotella timonensis CRIS 5C-B1] Length = 200 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 70/181 (38%), Positives = 110/181 (60%), Gaps = 1/181 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG + AA+IL + +NDSK+++ KKR EL E I +A+ ++ Sbjct: 13 AGCDEAGRGCLAGSIFAAAVILPSDYDNHVLNDSKQLTRKKRNELREVIMQAAVAWAVGE 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S Q ID+ NI +A+ A++ A++ L+V P++ ++DG ++KGD+ S Sbjct: 73 VSPQEIDEINILRASFLAMHRALDQLKVRPQAIIVDGNRFTPYHDIPYTTIVKGDAKYQS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 IAAASI+AK RD M ++YP Y ++S++GYPT +H+ I++ G + HR ++ L Sbjct: 133 IAAASILAKTFRDDYMDRLAEEYPQYHWESNMGYPTREHRAAIQQYGVTPYHRRSYNLLG 192 Query: 206 N 206 N Sbjct: 193 N 193 >gi|257869680|ref|ZP_05649333.1| ribonuclease HII [Enterococcus gallinarum EG2] gi|257803844|gb|EEV32666.1| ribonuclease HII [Enterococcus gallinarum EG2] Length = 257 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 88/194 (45%), Positives = 127/194 (65%), Gaps = 3/194 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + +K + VAG+DEVGRG LAGPVV AA++L N G+NDSK++S KKREEL+ Sbjct: 63 FEQELYQKGLRFVAGLDEVGRGPLAGPVVAAAVVLPKNCGIIGLNDSKQLSAKKREELFI 122 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + A+ I I A H+ ID+ NI++A+ +A+ A+ +L + P L+D ++ D+P Sbjct: 123 EIQNKAVAIGIGIADHEEIDRVNIYQASKNAMKRALADLSITPEHLLVDAMTLDTDIP-- 180 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SIAAASI+AKV RD LM+ H +P YGFD + GY T H + + G Sbjct: 181 QTSLIKGDARSISIAAASIMAKVFRDNLMKDYHGVFPHYGFDQNAGYGTKTHLEGLAAHG 240 Query: 193 PSCIHRLTFRPLRN 206 IHR TF P++ Sbjct: 241 ICPIHRKTFAPVKQ 254 >gi|319649582|ref|ZP_08003738.1| hypothetical protein HMPREF1013_00342 [Bacillus sp. 2_A_57_CT2] gi|317398744|gb|EFV79426.1| hypothetical protein HMPREF1013_00342 [Bacillus sp. 2_A_57_CT2] Length = 259 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 88/196 (44%), Positives = 118/196 (60%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E R + +AGIDEVGRG LAGPVV AA+IL + G++DSKK+ KREE Sbjct: 61 QYEVRYRSQGFQFIAGIDEVGRGPLAGPVVAAAVILPEDFFLPGLDDSKKVPESKREEFS 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I + A S+ + ID+ NI +AT A+ A+E L P L D + P Sbjct: 121 EIIKAKAAAFSVGIIDPEEIDRINIFEATKKAMLSAIEGLSPKPDFLLADAVKLLTPYPM 180 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + A+IKGD S+SIAAASIIAKVTRDR+M K++P YGF+ ++GY T +H + I Sbjct: 181 E--AIIKGDGKSISIAAASIIAKVTRDRMMAEIGKEFPQYGFEKNMGYGTKEHLEAITLH 238 Query: 192 GPSCIHRLTFRPLRNL 207 G S HR +F P++NL Sbjct: 239 GISPYHRKSFAPIKNL 254 >gi|217967913|ref|YP_002353419.1| Ribonuclease H [Dictyoglomus turgidum DSM 6724] gi|217337012|gb|ACK42805.1| Ribonuclease H [Dictyoglomus turgidum DSM 6724] Length = 203 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 84/193 (43%), Positives = 115/193 (59%), Gaps = 3/193 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + +AG+DE GRGALAGPV A+IL P + +NDSK +S K+REEL+ Sbjct: 13 ERERELWYY-FRYIAGVDEAGRGALAGPVYAGAVILPPLSSIP-VNDSKLLSPKEREELF 70 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I A+ S A+ + I++ I KATL A+ A+E L++ P L+DG ++ Sbjct: 71 EIIKKEALCWSFGYATVEEIEELGILKATLLAMRRAIEKLEIKPEYLLVDGNIPIPNMDI 130 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++KGD LSIA+ASI+AKV RDR M+ K+YP YGF H GY T +H++ IK Sbjct: 131 PQETIVKGDRKCLSIASASIVAKVLRDRYMKELDKEYPGYGFSRHKGYATKEHREKIKSL 190 Query: 192 GPSCIHRLTFRPL 204 G IHR F+ L Sbjct: 191 GSLLIHRKGFKLL 203 >gi|300727476|ref|ZP_07060867.1| ribonuclease HII [Prevotella bryantii B14] gi|299775179|gb|EFI71780.1| ribonuclease HII [Prevotella bryantii B14] Length = 203 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 77/179 (43%), Positives = 106/179 (59%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK++S KKR L E+I A+ +I Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPADYNNPELNDSKQLSLKKRYALREQIQKDAVAWAIGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + IDK NI A+ A++ A+E LQV P++ +IDG ++KGDS S Sbjct: 73 VTPEEIDKINILHASFLAMHRAIEQLQVKPQALIIDGNHFDPYKDLPYTTIVKGDSKYQS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M+ ++YP Y + S+ GYPT KH+ I+E G S HR ++ L Sbjct: 133 IAAASILAKTYRDDYMKALAEEYPYYDWASNKGYPTKKHRLGIREHGVSPYHRKSYNLL 191 >gi|189459842|ref|ZP_03008627.1| hypothetical protein BACCOP_00472 [Bacteroides coprocola DSM 17136] gi|189433452|gb|EDV02437.1| hypothetical protein BACCOP_00472 [Bacteroides coprocola DSM 17136] Length = 200 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 102/179 (56%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSKK++ +R L E I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPSDYENQQLNDSKKLTEHQRYALREVIERDAIAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + Q IDK NI A+ A++ A++ L+V P+ LIDG + V+KGD LS Sbjct: 73 VTPQEIDKINILNASFLAMHRAIDQLKVRPQHLLIDGNRFNKYEDLPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M ++YP Y + + GYPT KH++ I G + HR+T+ L Sbjct: 133 IAAASILAKTYRDDYMNRLAEEYPLYDWQKNKGYPTKKHREAIARYGTTPYHRMTYNLL 191 >gi|17546137|ref|NP_519539.1| ribonuclease HII [Ralstonia solanacearum GMI1000] gi|39932439|sp|Q8XZH7|RNH2_RALSO RecName: Full=Ribonuclease HII; Short=RNase HII gi|17428433|emb|CAD15120.1| probable ribonuclease hII (rnase hII) protein [Ralstonia solanacearum GMI1000] Length = 236 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 76/194 (39%), Positives = 116/194 (59%), Gaps = 5/194 (2%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 ++ + G+DE GRG LAGPV AA++L+P G+ DSK ++ KKRE LY++I Sbjct: 20 AAGKRARRILCGVDEAGRGPLAGPVTAAAVVLNPRKPIQGLADSKVLTAKKREALYDEIV 79 Query: 77 SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLPCQ 132 A+ ++ A+ + ID+ NI AT+ A+ AV+ + V+P +DG P+ + Sbjct: 80 EKALAWHVAEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVDGNRCPQ-VAFA 138 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A++KGD++ +I+AASI+AKVTRDR + H +P YGFD H GY T +H I+ G Sbjct: 139 VEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPQYGFDVHAGYGTPQHLAAIERHG 198 Query: 193 PSCIHRLTFRPLRN 206 + HR +F P+R Sbjct: 199 VTPHHRRSFAPVRR 212 >gi|229174503|ref|ZP_04302035.1| Ribonuclease [Bacillus cereus MM3] gi|228609063|gb|EEK66353.1| Ribonuclease [Bacillus cereus MM3] Length = 257 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 94/194 (48%), Positives = 126/194 (64%), Gaps = 3/194 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L N G+NDSKK+S KRE Y+ Sbjct: 62 YEIALREKGLTLIAGIDEVGRGPLAGPVVTAAVVLPENFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ AV NL P LID +P P Sbjct: 122 EIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCAPEHLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLGAIEAHG 239 Query: 193 PSCIHRLTFRPLRN 206 HR +F P+++ Sbjct: 240 VLEEHRKSFAPIKD 253 >gi|319762189|ref|YP_004126126.1| ribonuclease h [Alicycliphilus denitrificans BC] gi|330825999|ref|YP_004389302.1| ribonuclease H [Alicycliphilus denitrificans K601] gi|317116750|gb|ADU99238.1| Ribonuclease H [Alicycliphilus denitrificans BC] gi|329311371|gb|AEB85786.1| Ribonuclease H [Alicycliphilus denitrificans K601] Length = 206 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 89/210 (42%), Positives = 128/210 (60%), Gaps = 9/210 (4%) Query: 2 FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61 S+PE+ F+ VAG+DE GRG LAGPVV AA+ILD G+ DSK Sbjct: 3 LPRSLPEQASFDW------HPGGLVAGVDEAGRGPLAGPVVAAAVILDDQQPIVGLADSK 56 Query: 62 KISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 ++ +RE L+++I + A+ S++ AS + ID+ NI +ATL A+ AV+ L++ P AL+ Sbjct: 57 ALTAARRERLFDEIRAKALCCSVAEASVEEIDRLNILQATLLAMRRAVQGLRLKPTLALV 116 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG +P L A A++KGD+ +I+AASI+AKVTRDR H +YP YGF H GY Sbjct: 117 DGNRLPR-LDMPAEAIVKGDARVAAISAASILAKVTRDRWCAELHAQYPQYGFAGHKGYG 175 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPL-RNLSV 209 TA+H ++ G HR +F P+ R L++ Sbjct: 176 TAEHLAALQAHGACPQHRRSFAPVARALAL 205 >gi|257867805|ref|ZP_05647458.1| ribonuclease HII [Enterococcus casseliflavus EC30] gi|257874132|ref|ZP_05653785.1| ribonuclease HII [Enterococcus casseliflavus EC10] gi|257876697|ref|ZP_05656350.1| ribonuclease HII [Enterococcus casseliflavus EC20] gi|257801888|gb|EEV30791.1| ribonuclease HII [Enterococcus casseliflavus EC30] gi|257808296|gb|EEV37118.1| ribonuclease HII [Enterococcus casseliflavus EC10] gi|257810863|gb|EEV39683.1| ribonuclease HII [Enterococcus casseliflavus EC20] Length = 254 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 89/195 (45%), Positives = 124/195 (63%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E ++ +AG+DEVGRG LAGPVV AA+IL G+NDSK++S KKREEL+ Sbjct: 60 RFENEAFQQGARFIAGLDEVGRGPLAGPVVSAAVILPKECQILGLNDSKQLSAKKREELF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I + A+ + I S + ID+ NI++A+ A+ A+ +L V P LID +I ++P Sbjct: 120 IEIQNKAVAVGIGVVSPEEIDRINIYQASRLAMKEALIDLAVKPEYLLIDAMTIDTEIPQ 179 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 Q+ +IKGD+ S+SIAAASIIAKV RD LM+ H+ YP YGFD + GY T H + + Sbjct: 180 QS--LIKGDARSISIAAASIIAKVYRDNLMKDFHEVYPFYGFDQNAGYGTKVHLEGLAAH 237 Query: 192 GPSCIHRLTFRPLRN 206 G IHR TF P++ Sbjct: 238 GICPIHRKTFAPVKQ 252 >gi|261419405|ref|YP_003253087.1| ribonuclease HII [Geobacillus sp. Y412MC61] gi|319766220|ref|YP_004131721.1| ribonuclease H [Geobacillus sp. Y412MC52] gi|261375862|gb|ACX78605.1| Ribonuclease H [Geobacillus sp. Y412MC61] gi|317111086|gb|ADU93578.1| Ribonuclease H [Geobacillus sp. Y412MC52] Length = 260 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 85/196 (43%), Positives = 121/196 (61%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + +AGIDE GRG LAGPVV AA+IL + G++DSK+++ +KRE L+ Sbjct: 60 RYERELYAAGVRRIAGIDEAGRGPLAGPVVAAAVILPKDAYLPGLDDSKRLTPEKREALF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I + A+ I I S ID+ NI++AT A+ AV L P L+D ++P LP Sbjct: 120 AQIEACAVAIGIGIVSAAEIDERNIYEATRQAMAKAVNALSPPPEHLLVDAMAVPCPLP- 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S SIAAAS+IAKVTRDR M+ ++YP YGF H+GY T +H + I+ Sbjct: 179 -QQRLIKGDANSASIAAASVIAKVTRDRWMKELDRRYPQYGFARHMGYGTPEHFEAIRRY 237 Query: 192 GPSCIHRLTFRPLRNL 207 G + HR +F P+R + Sbjct: 238 GVTPEHRRSFAPVREV 253 >gi|254805764|ref|YP_003083985.1| Ribonuclease HII [Neisseria meningitidis alpha14] gi|254669306|emb|CBA08298.1| Ribonuclease HII [Neisseria meningitidis alpha14] Length = 194 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 81/182 (44%), Positives = 105/182 (57%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I A +A Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDTLAEMIKDQAAAWHVAA 65 Query: 87 -SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 ATPEEIASLNILHATMLAMKRAVDGLVVHPEKIFIDGNRIPEHLGIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NL 207 NL Sbjct: 186 NL 187 >gi|228474964|ref|ZP_04059692.1| ribonuclease HII [Staphylococcus hominis SK119] gi|228270949|gb|EEK12337.1| ribonuclease HII [Staphylococcus hominis SK119] Length = 255 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 81/196 (41%), Positives = 117/196 (59%), Gaps = 4/196 (2%) Query: 14 LEAMVREKN-MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + N + GIDEVGRG LAGPVV A+IL+ + G++DSKK+S KR+ L Sbjct: 61 YENKILKDNPNALICGIDEVGRGPLAGPVVACAVILNKEHQYLGLDDSKKVSATKRKILN 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E++ + AS + ID+ NI+ AT A+ A+ L+ P LID ++ +P Sbjct: 121 EQLKEGVYDYAYGIASAEEIDEFNIYNATKLAMERAINQLKQQPNHLLIDAMTLDNAMP- 179 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASI+AK RD LM KYP Y F+ +VGY T H Q +K+ Sbjct: 180 -QTSIIKGDAKSVSIAAASIMAKEYRDGLMAAVALKYPGYDFEKNVGYGTKSHLQGLKQL 238 Query: 192 GPSCIHRLTFRPLRNL 207 G + HR TF P++++ Sbjct: 239 GITPYHRKTFEPVKSM 254 >gi|260752544|ref|YP_003225437.1| ribonuclease H [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551907|gb|ACV74853.1| Ribonuclease H [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 215 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 87/202 (43%), Positives = 125/202 (61%), Gaps = 9/202 (4%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P E ++ V G+DEVGRG LAGPV+ A+ L +IP GINDSKK++ ++R Sbjct: 14 PDLSYEDRIK----GVVFGVDEVGRGPLAGPVMAGAVYLHREHIPEGINDSKKLTARRRH 69 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL----QVIPRSALIDGRSI 125 L + + + A + A+ ID+ NI +A+L A+ AVE L P L+DGR I Sbjct: 70 LLSDMLHNQADYATGMANVHEIDRINIRQASLLAMKRAVEALIQKIGREPDCILVDGRDI 129 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P D P + +IKGDS+SLSIAAASI+AKV RD +M A ++YP YG++ ++GYPT +H+ Sbjct: 130 P-DWPWLSLPIIKGDSLSLSIAAASIVAKVERDEIMVKASQEYPGYGWEHNMGYPTKEHR 188 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 + I+ P+ HR +F P+R Sbjct: 189 EAIQRLKPTKFHRRSFSPIRQF 210 >gi|255069909|ref|XP_002507036.1| ribonuclease HII [Micromonas sp. RCC299] gi|226522311|gb|ACO68294.1| ribonuclease HII [Micromonas sp. RCC299] Length = 262 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 83/200 (41%), Positives = 120/200 (60%), Gaps = 2/200 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + E V G+DE GRG LAGPVV AA + + + INDSK+++ ++RE Sbjct: 54 PSRDAERRCWSAGKKIVCGVDEAGRGPLAGPVVAAACVFPEDLVIDAINDSKQMTEEERE 113 Query: 70 ELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E+YE++ ++ + S+ H+ ID+ NI +AT+ A+ +VE L LIDG +P Sbjct: 114 EVYEELMANDQVIKSVCVIDHERIDEINILEATMQAMAKSVEGLSTRADWVLIDGNRVPP 173 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L +A A++KGD+ S+ IAAAS++AKVTRDR+M H +YP YGFD H GY H Sbjct: 174 PLIDRAEAIVKGDAKSVCIAAASVLAKVTRDRMMVKIHDEYPVYGFDQHKGYGVKAHMDA 233 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 I + GP HR TF P++ + Sbjct: 234 IHKHGPCPYHRKTFAPMKYM 253 >gi|297530620|ref|YP_003671895.1| ribonuclease H [Geobacillus sp. C56-T3] gi|297253872|gb|ADI27318.1| Ribonuclease H [Geobacillus sp. C56-T3] Length = 260 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 85/196 (43%), Positives = 121/196 (61%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + +AGIDE GRG LAGPVV AA+IL + G++DSK+++ +KRE L+ Sbjct: 60 RYERELYAAGVRRIAGIDEAGRGPLAGPVVAAAVILPKDAYLPGLDDSKRLTPEKREALF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I + A+ I I S ID+ NI++AT A+ AV L P L+D ++P LP Sbjct: 120 AQIEACAVAIGIGIVSAAEIDERNIYEATRQAMAKAVNALSPPPEHLLVDAMAVPCPLP- 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S SIAAAS+IAKVTRDR M+ ++YP YGF H+GY T +H + I+ Sbjct: 179 -QQRLIKGDANSASIAAASVIAKVTRDRWMKELDRRYPQYGFARHMGYGTPEHFEAIRRY 237 Query: 192 GPSCIHRLTFRPLRNL 207 G + HR +F P+R + Sbjct: 238 GVTPEHRRSFAPVREV 253 >gi|56419740|ref|YP_147058.1| ribonuclease HII [Geobacillus kaustophilus HTA426] gi|81347633|sp|Q5L0P0|RNH2_GEOKA RecName: Full=Ribonuclease HII; Short=RNase HII gi|56379582|dbj|BAD75490.1| ribonuclease HII [Geobacillus kaustophilus HTA426] Length = 260 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 85/196 (43%), Positives = 121/196 (61%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + +AGIDE GRG LAGPVV AA+IL + G++DSK+++ +KRE L+ Sbjct: 60 RYERELYAAGVRRIAGIDEAGRGPLAGPVVAAAVILPKDAYLPGLDDSKRLTPEKREALF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I + A+ I I S ID+ NI++AT A+ AV L P L+D ++P LP Sbjct: 120 AQIEACAVAIGIGIVSAAEIDERNIYEATRQAMAKAVNALSPPPEHLLVDAMAVPCPLP- 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S SIAAAS+IAKVTRDR M+ ++YP YGF H+GY T +H + I+ Sbjct: 179 -QQRLIKGDANSASIAAASVIAKVTRDRWMKELDRRYPQYGFARHMGYGTPEHFEAIRRY 237 Query: 192 GPSCIHRLTFRPLRNL 207 G + HR +F P+R + Sbjct: 238 GVTPEHRRSFAPVREV 253 >gi|194289778|ref|YP_002005685.1| ribonuclease hii [Cupriavidus taiwanensis LMG 19424] gi|193223613|emb|CAQ69620.1| RIBONUCLEASE HII PROTEIN [Cupriavidus taiwanensis LMG 19424] Length = 258 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 81/188 (43%), Positives = 114/188 (60%), Gaps = 5/188 (2%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81 + + G+DE GRG LAGPV AA++LDP G+ DSK ++ KRE LYEKI A+ Sbjct: 26 IQRLCGVDEAGRGPLAGPVYAAAVVLDPKRPIRGLADSKILTAAKREALYEKICERALGW 85 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLPCQAFAVIK 138 I+ A+ + ID NI A++ A+ AV+ L V+P +DG P+ + A++K Sbjct: 86 HIAFATVEEIDTINILHASMLAMQRAVQGLAASGVVPDLVQVDGNRCPQ-VAYPVEAIVK 144 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD++ +I+AASI+AKV RDR + H YP YGFDSHVGY T +H + E G + HR Sbjct: 145 GDALVKAISAASILAKVARDRALMELHAAYPQYGFDSHVGYGTPQHMAALAEFGATPHHR 204 Query: 199 LTFRPLRN 206 +F P+R Sbjct: 205 RSFAPVRE 212 >gi|251797462|ref|YP_003012193.1| ribonuclease H [Paenibacillus sp. JDR-2] gi|247545088|gb|ACT02107.1| Ribonuclease H [Paenibacillus sp. JDR-2] Length = 203 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 86/192 (44%), Positives = 117/192 (60%), Gaps = 4/192 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E E + + +AG+DEVGRG L G VV AA+IL P+ + G+NDSKK+S KKR EL Sbjct: 2 LEYEERLWAEGYSAIAGVDEVGRGCLFGDVVAAAVILPPHLVLEGVNDSKKLSEKKRNEL 61 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I +I + + + ID+ NI +A A+ A+E+L+ P L+D + DLP Sbjct: 62 YDIIVDQSIAWAAARVDAETIDRINIKQAARLAMKIALESLKTEPDYFLVDAEKV--DLP 119 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMR-IAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A+IKGD+ S SIAAASIIAKVTRDRL + YP+YG H GY T H++ + Sbjct: 120 KPQLAIIKGDATSQSIAAASIIAKVTRDRLCEKEWEQLYPEYGIAIHKGYATKLHRERLL 179 Query: 190 EKGPSCIHRLTF 201 E G S +HR +F Sbjct: 180 EYGASPLHRKSF 191 >gi|332184412|gb|AEE26666.1| Ribonuclease HII [Francisella cf. novicida 3523] Length = 185 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 82/185 (44%), Positives = 117/185 (63%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 + GIDE GRG L+GPVV A ++LDPN I G+ DSKK++ KKR+ LY++I S A + Sbjct: 1 MIILGIDEAGRGPLSGPVVAAGVVLDPNIIIDGLADSKKLTEKKRQSLYQQIISHAKAYT 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I S ID+ NI +ATL A++ +NL+ L+DG +P + + A++KGDS Sbjct: 61 IVEISSHQIDELNILQATLKAMHQVADNLKGQFDKILVDGNKLP-NWNYNSEAIVKGDSK 119 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 L I+AASI+AKV RD + + YP YGF H GYPT +H + IK+ G IHR +++ Sbjct: 120 ILEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYK 179 Query: 203 PLRNL 207 P++ L Sbjct: 180 PVQIL 184 >gi|325139084|gb|EGC61630.1| ribonuclease HII [Neisseria meningitidis ES14902] Length = 194 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 80/182 (43%), Positives = 105/182 (57%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 AG+DE GRG G V AA+IL G+ DSKK+S KKR+ L E I + A +A Sbjct: 6 AGVDEAGRGPFVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKNQAAAWHVAA 65 Query: 87 -SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 ATPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHLGIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NL 207 NL Sbjct: 186 NL 187 >gi|261400117|ref|ZP_05986242.1| ribonuclease HII [Neisseria lactamica ATCC 23970] gi|269210350|gb|EEZ76805.1| ribonuclease HII [Neisseria lactamica ATCC 23970] Length = 194 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 79/182 (43%), Positives = 106/182 (58%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I + A +A Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKNQAAAWHVAA 65 Query: 87 S-HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + I NI AT+ A+ A++ L V P IDG IPE L A AV+KGDS + Sbjct: 66 AGPEEIAGLNILHATMLAMKRAIDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +++ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALEKYGVLPEHRRDFAPVR 185 Query: 206 NL 207 NL Sbjct: 186 NL 187 >gi|199599536|ref|ZP_03212924.1| Ribonuclease HII [Lactobacillus rhamnosus HN001] gi|258508404|ref|YP_003171155.1| ribonuclease HII [Lactobacillus rhamnosus GG] gi|199589577|gb|EDY97695.1| Ribonuclease HII [Lactobacillus rhamnosus HN001] gi|257148331|emb|CAR87304.1| Ribonuclease HII [Lactobacillus rhamnosus GG] gi|259649719|dbj|BAI41881.1| ribonuclease HII [Lactobacillus rhamnosus GG] Length = 252 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 85/194 (43%), Positives = 120/194 (61%), Gaps = 5/194 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + VAG+DEVGRG LAGPVV AA+IL P+ + +NDSK+++ +R+ LY Sbjct: 58 RYERKLWKM-YSHVAGLDEVGRGPLAGPVVTAAVIL-PHQFKWPVNDSKQLTAHERDVLY 115 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I + AI + I A + ID+ NI+ AT A+ AV +L+V P L+D +P +LP Sbjct: 116 PHILTEAIAVGIGVADNHEIDRENIYHATELAMAQAVSHLRVAPEFLLVDAMHVPVNLP- 174 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S+SIAAASI+AKV RDRLM + + YP Y F ++GY T H + Sbjct: 175 -QERLIKGDANSISIAAASIVAKVIRDRLMVMYDRVYPGYDFKDNMGYGTKAHLAGLATH 233 Query: 192 GPSCIHRLTFRPLR 205 G + IHR +F P+R Sbjct: 234 GVTPIHRRSFGPVR 247 >gi|114705285|ref|ZP_01438193.1| ribonuclease HII protein [Fulvimarina pelagi HTCC2506] gi|114540070|gb|EAU43190.1| ribonuclease HII protein [Fulvimarina pelagi HTCC2506] Length = 245 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 97/197 (49%), Positives = 131/197 (66%), Gaps = 1/197 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKR 68 P F E + E +AG+DEVGRG LAGPVV AA+I +P IP GINDSK+++ K R Sbjct: 19 PDFSREHALLEAGAEWIAGVDEVGRGPLAGPVVAAAVIFENPRRIPVGINDSKQLTAKAR 78 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E+L+ I ++A ++I+S S + ID +I +ATL A+ A+ L + P AL DGR +P Sbjct: 79 EQLFADILANAHVAIASVSAKEIDAIDIRQATLTAMTKALAQLVIRPCHALFDGRDVPPA 138 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 A++KGDSIS+SIAAASI+AKV RDR+M+ A YP YGF ++VGY A H I Sbjct: 139 WTANGTAIVKGDSISVSIAAASIVAKVQRDRMMQHACGLYPGYGFTTNVGYGCAAHLAAI 198 Query: 189 KEKGPSCIHRLTFRPLR 205 GP+ IHR++F+PLR Sbjct: 199 AALGPTPIHRMSFKPLR 215 >gi|114562462|ref|YP_749975.1| ribonuclease H [Shewanella frigidimarina NCIMB 400] gi|122300308|sp|Q085C8|RNH2_SHEFN RecName: Full=Ribonuclease HII; Short=RNase HII gi|114333755|gb|ABI71137.1| Ribonuclease H [Shewanella frigidimarina NCIMB 400] Length = 212 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 86/182 (47%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG L G VV AA+ILDPN G+NDSKK+S K+R LY++I +A+ +S Sbjct: 22 GLVAGVDEVGRGPLIGDVVTAAVILDPNKPIVGLNDSKKLSEKRRNALYQQIMDNALSVS 81 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + AS ID+ NI AT+ A+ AV L ++P L+DG +P D + A+IKGD + Sbjct: 82 VGRASPAEIDELNILHATMLAMQRAVAGLSILPERVLVDGNRVP-DFGIASHAIIKGDGL 140 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASIIAKVTRD M +YP YGF H GYPT H + + G HR +F+ Sbjct: 141 VAAISAASIIAKVTRDAEMDTLDSQYPQYGFAKHKGYPTKAHFEALALYGVLPDHRKSFK 200 Query: 203 PL 204 P+ Sbjct: 201 PV 202 >gi|228471979|ref|ZP_04056747.1| ribonuclease HII [Capnocytophaga gingivalis ATCC 33624] gi|228276591|gb|EEK15304.1| ribonuclease HII [Capnocytophaga gingivalis ATCC 33624] Length = 197 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 102/179 (56%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL + +NDSK+++ K+R L I A+ ++ Sbjct: 11 AGTDEAGRGCLAGPVTAAAVILPEDFYHPLLNDSKQMTEKQRNLLRPIIEEQALSYAVVH 70 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI A+++A++ A++ L + P ++DG +KGD + Sbjct: 71 LSPERIDQINILNASIEAMHQALDKLTLTPEFVVVDGNRFKPYKEIPYSCQVKGDGRFMR 130 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAAS++AK RD M HK+YP Y +D + GYPT +H++ I E G HR TF+ + Sbjct: 131 IAAASVLAKTYRDAYMETLHKQYPMYHWDKNKGYPTREHREAILEYGACEHHRKTFQLI 189 >gi|302771367|ref|XP_002969102.1| ribonuclease H11 [Selaginella moellendorffii] gi|300163607|gb|EFJ30218.1| ribonuclease H11 [Selaginella moellendorffii] Length = 195 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 93/192 (48%), Positives = 120/192 (62%), Gaps = 7/192 (3%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS--AIIS 82 V G+DE GRG LAGPVV AA I+ + GI+DSKK++ +KRE+LY +ITS+ S Sbjct: 2 RVIGVDEAGRGPLAGPVVAAACIIPEDVDIQGIDDSKKLTAEKREQLYSQITSTPGVRFS 61 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENL----QVIPRSALIDGRSIPEDLPCQ-AFAVI 137 I ID+ NI +AT++A+ VE L + P LIDG IP L + A +V+ Sbjct: 62 ICVVDAPRIDEINILQATMEAMETCVEELTGNGRDHPPYILIDGNRIPGGLSGKHARSVV 121 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD+ S IAAASI+AKVTRDRLM K++P YGF H GY TA H + + GP IH Sbjct: 122 KGDAESHVIAAASILAKVTRDRLMEDYDKRWPLYGFKDHKGYGTASHTAALLKHGPCDIH 181 Query: 198 RLTFRPLRNLSV 209 R +F PLRNL + Sbjct: 182 RRSFAPLRNLIL 193 >gi|255002889|ref|ZP_05277853.1| ribonuclease HII [Anaplasma marginale str. Puerto Rico] Length = 238 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 90/205 (43%), Positives = 124/205 (60%), Gaps = 3/205 (1%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKI 63 + P F +E +R + + G+DEVG GA+AGPVV AA+ L + I DSK + Sbjct: 1 MNRMPSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKAL 60 Query: 64 SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 S KKREEL+ KIT+ A + A + I++HNI A+ ++ ++NL V L+DG Sbjct: 61 SSKKREELFCKITAHAKYGVGFARVREIEQHNILVASHISMKT-LQNLGVKADLVLVDGS 119 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 P LP ++KGDSIS SIAAASIIAKVTRDR MR H++YP+Y ++ + GY T Sbjct: 120 RAPAGLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKA 179 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLS 208 H Q +K G + HR TF P++ LS Sbjct: 180 HMQSLKLYGKTAQHRSTFAPVKQLS 204 >gi|282879385|ref|ZP_06288128.1| ribonuclease HII [Prevotella buccalis ATCC 35310] gi|281298498|gb|EFA90924.1| ribonuclease HII [Prevotella buccalis ATCC 35310] Length = 203 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 105/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL PN +NDSK++S KKR+ L + I + A+ ++ Sbjct: 16 AGCDEAGRGCLAGSVFAAAVILPPNYDNADLNDSKQLSRKKRDALRQAIINDAVAWAVGE 75 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + Q ID+ NI +A+ A++ A++ L P++ ++DG +IKGD Sbjct: 76 VTPQEIDEINILRASFLAMHRALDQLTTRPQAIIVDGNRFTPYHDLPYTTIIKGDGKYQD 135 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M ++YP Y + S++GYPT KH++ I+ G + HR +F L Sbjct: 136 IAAASILAKTFRDDYMDRLAQEYPQYDWQSNMGYPTRKHREAIRAYGITPYHRRSFNLL 194 >gi|189499018|ref|YP_001958488.1| ribonuclease HII [Chlorobium phaeobacteroides BS1] gi|189494459|gb|ACE03007.1| Ribonuclease H [Chlorobium phaeobacteroides BS1] Length = 207 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 87/201 (43%), Positives = 110/201 (54%), Gaps = 7/201 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKKR 68 + E V GIDE GRG LAGPVV AA++ P G +NDSK + K+R Sbjct: 7 DYEEKFW-HEHTCVCGIDEAGRGPLAGPVVAAAVMFPRYFKPEGVLTGLNDSKTLRPKQR 65 Query: 69 EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 L E I S+A SIS H ID NI AT+ A+ A E L+ +P LIDG Sbjct: 66 SALAEAIQSAAECFSISIIDHTTIDSVNIFNATMLAMNAAAEKLEQLPGLLLIDGNRFVP 125 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP ++KGD+ +SIAAASI+AK RDR+M H++YP+YGF H GYPT H Sbjct: 126 SLPIPYLTIVKGDTKVVSIAAASILAKTCRDRIMNEYHREYPEYGFAQHFGYPTQAHIAA 185 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 I G IHR +FR ++ L Sbjct: 186 IARYGRCPIHRTSFR-VKQLG 205 >gi|299067473|emb|CBJ38672.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum CMR15] Length = 236 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 75/194 (38%), Positives = 115/194 (59%), Gaps = 5/194 (2%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 ++ + G+DE GRG LAGPV A++L+P G+ DSK ++ KKRE LY++I Sbjct: 20 AAGKRARRILCGVDEAGRGPLAGPVTAGAVVLNPRKPIQGLADSKVLTAKKREALYDEIV 79 Query: 77 SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLPCQ 132 A+ ++ A+ + ID+ NI AT+ A+ AV+ + V+P +DG P+ + Sbjct: 80 EKALAWHVAEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVDGNRCPQ-VAFA 138 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A++KGD++ +I+AASI+AKVTRDR + H +P YGFD H GY T +H I+ G Sbjct: 139 VEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPQYGFDVHAGYGTPQHLAAIERHG 198 Query: 193 PSCIHRLTFRPLRN 206 + HR +F P+R Sbjct: 199 VTPHHRRSFAPVRR 212 >gi|251810677|ref|ZP_04825150.1| ribonuclease HII [Staphylococcus epidermidis BCM-HMP0060] gi|251805837|gb|EES58494.1| ribonuclease HII [Staphylococcus epidermidis BCM-HMP0060] Length = 260 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 78/184 (42%), Positives = 115/184 (62%), Gaps = 3/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + GIDEVGRG LAGPVV A+IL+ N+ G++DSKK+S K R L + + + + Sbjct: 77 LICGIDEVGRGPLAGPVVACAVILEKNHHYIGLDDSKKVSPKNRARLNQNLKENVYQYAY 136 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 AS ID+ NI++AT A+ A+ L V P LID ++ D+ ++IKGD+ S Sbjct: 137 GIASSVEIDELNIYRATQLAMLRAINQLDVTPTHLLIDAMTL--DIDIPQTSIIKGDAKS 194 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +SIAAASI+AK RD+ MR K++P+YGFD + GY T +H + I + G HR +F P Sbjct: 195 VSIAAASIMAKEYRDQYMRQLSKQFPEYGFDKNAGYGTKQHLKAIDQVGIINEHRQSFEP 254 Query: 204 LRNL 207 ++++ Sbjct: 255 IKSM 258 >gi|242242528|ref|ZP_04796973.1| ribonuclease HII [Staphylococcus epidermidis W23144] gi|242233955|gb|EES36267.1| ribonuclease HII [Staphylococcus epidermidis W23144] Length = 260 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 79/184 (42%), Positives = 115/184 (62%), Gaps = 3/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + GIDEVGRG LAGPVV A+IL+ N+ G++DSKK+S K R L + + + + Sbjct: 77 LICGIDEVGRGPLAGPVVACAVILEKNHHYIGLDDSKKVSPKNRARLNQNLKENVYQYAY 136 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 AS ID+ NI++AT A+ A+ +L V P LID ++ D+ ++IKGD+ S Sbjct: 137 GIASSVEIDELNIYRATQLAMLRAINHLDVTPTHLLIDAMTL--DIDIPQTSIIKGDAKS 194 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +SIAAASI+AK RD+ MR K++PDYGFD + GY T +H + I G HR +F P Sbjct: 195 VSIAAASIMAKEYRDQYMRQLSKQFPDYGFDKNAGYGTKQHLEAIDRVGFINEHRQSFEP 254 Query: 204 LRNL 207 ++++ Sbjct: 255 IKSM 258 >gi|296444554|ref|ZP_06886518.1| Ribonuclease H [Methylosinus trichosporium OB3b] gi|296257822|gb|EFH04885.1| Ribonuclease H [Methylosinus trichosporium OB3b] Length = 200 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 97/198 (48%), Positives = 128/198 (64%), Gaps = 2/198 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 PHF LE + +WPVAG+DE GRG LAGPV AA+ILDP +P G++DSK ++ + R Sbjct: 3 PHFRLETRLLRDGLWPVAGVDEAGRGPLAGPVAAAAVILDPRRLPEGVDDSKALTAEARA 62 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +E+I +SA+ I ++ S + ID NI +ATL A+ AV L + PR ALIDG P Sbjct: 63 AAFERIAASALAIGVAFVSAEEIDAMNIRQATLAAMARAVAALSLAPRHALIDGND-PPS 121 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L C A A++KGD+ LSIAAASI+AKV RDR MR + YP YGF ++ GY T +H I Sbjct: 122 LACPAEAIVKGDASCLSIAAASIVAKVMRDRQMRRLAELYPAYGFAANAGYGTKEHLAAI 181 Query: 189 KEKGPSCIHRLTFRPLRN 206 GP+ HR +F P+R Sbjct: 182 AALGPTPHHRTSFSPMRR 199 >gi|300704217|ref|YP_003745820.1| ribonuclease hII (RNAse hII) [Ralstonia solanacearum CFBP2957] gi|299071881|emb|CBJ43210.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum CFBP2957] Length = 236 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 78/207 (37%), Positives = 120/207 (57%), Gaps = 9/207 (4%) Query: 8 ERPHFELEA----MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 E P F L +++ + G+DE GRG LAGPV A++L+P G+ DSK + Sbjct: 7 ETPQFALPLSQSPAAGKRSRRILCGVDEAGRGPLAGPVTAGAVVLNPRKPIKGLADSKVL 66 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSAL 119 + K+RE LY++I A+ ++ A+ + ID+ NI AT+ A+ AV+ + V+P Sbjct: 67 TAKRREALYDEIVEKALAWHVAEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQ 126 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 +DG P+ + A++KGD++ +I+AASI+AKVTRDR + H +P YGFD H GY Sbjct: 127 VDGNRCPQ-VAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHVAFPHYGFDVHAGY 185 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRN 206 T +H I+ G + HR +F P+R Sbjct: 186 GTPQHLAAIERHGVTPHHRRSFAPVRR 212 >gi|300691590|ref|YP_003752585.1| ribonuclease HII (RNase HII) [Ralstonia solanacearum PSI07] gi|299078650|emb|CBJ51308.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum PSI07] Length = 242 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 79/212 (37%), Positives = 120/212 (56%), Gaps = 9/212 (4%) Query: 3 CNSIPERPHFELEAM----VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN 58 + P+ P L + + G+DE GRG LAGPV AA++L+P G+ Sbjct: 8 ADDSPDAPQLALPLAQLPAAGRRARRILCGVDEAGRGPLAGPVTAAAVVLNPRKPIKGLA 67 Query: 59 DSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVI 114 DSK ++ KKRE LY++I A+ ++ A+ + ID+ NI AT+ A+ AV+ + V+ Sbjct: 68 DSKVLTAKKREALYDEIVEKALAWHVAEATVEEIDRINILHATMLAMQRAVQGVAAQGVL 127 Query: 115 PRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174 P +DG P+ + A++KGD++ +I+AASI+AKVTRDR + H +P YGFD Sbjct: 128 PDLVQVDGNRCPQ-VAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFD 186 Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 H GY T +H I+ G + HR +F P+R Sbjct: 187 VHAGYGTPQHLAAIELHGVTPHHRRSFAPVRR 218 >gi|329954154|ref|ZP_08295249.1| ribonuclease HII [Bacteroides clarus YIT 12056] gi|328528131|gb|EGF55111.1| ribonuclease HII [Bacteroides clarus YIT 12056] Length = 199 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 105/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFENDLLNDSKQLTEKQRYALREVIEKEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NI A+ A++ AV+ LQ+ P+ LIDG + V+KGD LS Sbjct: 73 VSPKEIDKINILNASFLAMHRAVDRLQLRPQHLLIDGNRFRKYGDIPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H+++P Y ++ + GYPT KH+ I +G + HR+TF L Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWNHNKGYPTKKHRAAIAGRGTTPYHRMTFNLL 191 >gi|325269676|ref|ZP_08136289.1| ribonuclease HII [Prevotella multiformis DSM 16608] gi|324988044|gb|EGC20014.1| ribonuclease HII [Prevotella multiformis DSM 16608] Length = 200 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 103/179 (57%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL P ++DSKK++ KR L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPPGYRNCELDDSKKLTPGKRYALRETIEHDALAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI A+ A++ A++ L+V P + ++DG ++KGD LS Sbjct: 73 VTPEEIDRINILNASFLAMHRALDQLKVRPEAVIVDGNRFTPYRKLPFATIVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M ++YP Y + ++GYPT KH+Q I+E G + HR ++ L Sbjct: 133 IAAASILAKTYRDDYMCSLAEEYPQYDWQKNMGYPTKKHRQAIREYGITPYHRKSYNLL 191 >gi|330813681|ref|YP_004357920.1| ribonuclease HII [Candidatus Pelagibacter sp. IMCC9063] gi|327486776|gb|AEA81181.1| ribonuclease HII [Candidatus Pelagibacter sp. IMCC9063] Length = 199 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 80/199 (40%), Positives = 120/199 (60%), Gaps = 4/199 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 +F+ E + + G+DEVGRG LAGPVV AA+IL+P+ INDSKKIS KKR Sbjct: 3 NFKRELQISNN----IIGVDEVGRGPLAGPVVAAAVILNPDICLKEINDSKKISKKKRNN 58 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ KI + + +I +S + I+K+NI +A+L A+ AV +L + + L+DG + Sbjct: 59 VFFKIINHSKFAIGFSSVEEIEKYNILQASLTAMKRAVTSLGTLKSTILVDGIHSFDKKN 118 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +KGD SIAAASI+AKV RD M I KKY YG++ + GY T++H +K+ Sbjct: 119 KKILTFVKGDEQFPSIAAASILAKVLRDNYMCILAKKYKGYGWEKNSGYGTSEHMGAMKK 178 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + +HR F P+ + + Sbjct: 179 FGLTPLHRKNFAPVHKMLL 197 >gi|126655902|ref|ZP_01727341.1| Ribonuclease HII/HIII [Cyanothece sp. CCY0110] gi|126623381|gb|EAZ94086.1| Ribonuclease HII/HIII [Cyanothece sp. CCY0110] Length = 199 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 80/194 (41%), Positives = 115/194 (59%), Gaps = 5/194 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 + A + + +AG+DEVGRG L GPVV AA++L+ ++IP G+ DSKK+S K+RE Sbjct: 1 MSAQLFSHSQILIAGVDEVGRGCLFGPVVAAAVVLEKSSIPQLQEIGVKDSKKLSAKRRE 60 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L I + AI IS AS Q ID+ NI A+L A+ ++ L + P+ LIDG + Sbjct: 61 TLATAIKNRAISYHISYASSQEIDRLNILNASLLAMKRSITKLSITPQLCLIDGNQKVPN 120 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L +I GD S IAAASI+AKV RD+L+ KYP Y +++ GY T KH+ + Sbjct: 121 LTIPQETIIGGDKSSPLIAAASILAKVWRDQLIVRLAAKYPHYDLENNKGYGTKKHRLAL 180 Query: 189 KEKGPSCIHRLTFR 202 ++ G HR +F+ Sbjct: 181 QQYGLCFHHRRSFK 194 >gi|332884737|gb|EGK04993.1| ribonuclease HII [Dysgonomonas mossii DSM 22836] Length = 199 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 72/176 (40%), Positives = 103/176 (58%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + I +NDSK+++ K+R L I A+ +I Sbjct: 13 AGCDEAGRGCLAGAVFAAAVILPKDFICEKLNDSKQLTEKERYALRPLIEEQALAWAIGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI A+ A+ AV +L+ P+ LIDG + V+KGD L Sbjct: 73 VNQKEIDEINILNASFLAMQRAVASLKTRPQHLLIDGNRFRKYEDIPHTCVVKGDGKLLP 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAAS++AK RD M H+++P Y +D + GYPT KH++ I++ G + HRLTF Sbjct: 133 IAAASVLAKTYRDDYMLNLHREHPLYDWDHNKGYPTKKHREAIEKYGVTPYHRLTF 188 >gi|195978102|ref|YP_002123346.1| ribonuclease HII [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|259494073|sp|B4U2W6|RNH2_STREM RecName: Full=Ribonuclease HII; Short=RNase HII gi|195974807|gb|ACG62333.1| ribonuclease HII RnhB [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 260 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 84/202 (41%), Positives = 122/202 (60%), Gaps = 6/202 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +K +AGIDEVGRG LAGP+V A +IL G+NDSKKI K E + Sbjct: 60 LTYEQALYQKGFQAIAGIDEVGRGPLAGPIVAACVILPKGCTIKGLNDSKKIPKAKHEAI 119 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127 Y+ I A+ I + + ID+ NI++AT A+ A+ L+ P LID ++ Sbjct: 120 YQAIQKKALGIGLGIIDNHTIDRVNIYEATKLAMIAAINQLKGSVSKPDYLLIDAMTL-- 177 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 ++P A+IKGD+ S+SIAAASI+AKVTRDRLM K +P YGF + GY T +H Q Sbjct: 178 EVPIPQQAIIKGDASSMSIAAASIVAKVTRDRLMLDYDKAFPGYGFAKNAGYGTKEHLQG 237 Query: 188 IKEKGPSCIHRLTFRPLRNLSV 209 + + G + IHR +F P++++++ Sbjct: 238 LHQYGITPIHRQSFEPIKSMTL 259 >gi|293366790|ref|ZP_06613466.1| ribonuclease HII [Staphylococcus epidermidis M23864:W2(grey)] gi|291319091|gb|EFE59461.1| ribonuclease HII [Staphylococcus epidermidis M23864:W2(grey)] Length = 260 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 77/184 (41%), Positives = 114/184 (61%), Gaps = 3/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + GIDEVGRG LAGPVV A+IL+ N+ G++DSKK+S R L + + + + Sbjct: 77 LICGIDEVGRGPLAGPVVACAVILEKNHHYIGLDDSKKVSPNNRARLNQNLKENVYQYAY 136 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 AS ID+ NI++AT A+ A+ L V P LID ++ D+ ++IKGD+ S Sbjct: 137 GIASSVEIDELNIYRATQLAMLRAINQLDVTPTHLLIDAMTL--DIDIPQTSIIKGDAKS 194 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +SIAAASI+AK RD+ MR K++P+YGFD + GY T +H + I + G HR +F P Sbjct: 195 VSIAAASIMAKEYRDQYMRQLSKQFPEYGFDKNAGYGTKQHLKAIDQVGIINEHRQSFEP 254 Query: 204 LRNL 207 ++++ Sbjct: 255 IKSM 258 >gi|319401464|gb|EFV89674.1| ribonuclease HII [Staphylococcus epidermidis FRI909] Length = 256 Score = 241 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 78/184 (42%), Positives = 115/184 (62%), Gaps = 3/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + GIDEVGRG LAGPVV A+IL+ N+ G++DSKK+S K R L + + + + Sbjct: 73 LICGIDEVGRGPLAGPVVACAVILEKNHHYIGLDDSKKVSPKNRARLNQNLKENVYQYAY 132 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 AS ID+ NI++AT A+ A+ +L V P LID ++ D+ ++IKGD+ S Sbjct: 133 GIASSVEIDELNIYRATQLAMLRAINHLDVTPTHLLIDAMTL--DIDIPQTSIIKGDAKS 190 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +SIAAASI+AK RD+ M+ K++PDYGFD + GY T +H + I G HR +F P Sbjct: 191 VSIAAASIMAKEYRDQYMKQLSKQFPDYGFDKNAGYGTKQHLEAIDRVGFINEHRQSFEP 250 Query: 204 LRNL 207 ++++ Sbjct: 251 IKSM 254 >gi|225868570|ref|YP_002744518.1| ribonuclease HII [Streptococcus equi subsp. zooepidemicus] gi|225701846|emb|CAW99303.1| ribonuclease HII [Streptococcus equi subsp. zooepidemicus] Length = 257 Score = 241 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 84/202 (41%), Positives = 120/202 (59%), Gaps = 6/202 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +K +AGIDEVGRG LAGPVV A +IL G+NDSKKI K E + Sbjct: 57 LTYEQALYQKGFQAIAGIDEVGRGPLAGPVVAACVILPKGCTIKGLNDSKKIPKAKHEAI 116 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127 Y+ I A+ I + + ID+ NI++AT A+ A+ L+ P LID ++ Sbjct: 117 YQAIQKKALGIGLGIIDNHTIDRVNIYEATKLAMIAAINQLKGSVSKPDYLLIDAMTL-- 174 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 ++ A+IKGD+ S+SIAAASI+AKVTRDRLM K +P YGF + GY T +H Q Sbjct: 175 EVSIPQQAIIKGDASSMSIAAASIVAKVTRDRLMLDYDKTFPGYGFAKNAGYGTKEHLQG 234 Query: 188 IKEKGPSCIHRLTFRPLRNLSV 209 + + G + IHR +F P++++ + Sbjct: 235 LHQYGVTPIHRQSFEPIKSMIL 256 >gi|206900540|ref|YP_002251240.1| ribonuclease HII [Dictyoglomus thermophilum H-6-12] gi|206739643|gb|ACI18701.1| ribonuclease HII [Dictyoglomus thermophilum H-6-12] Length = 203 Score = 241 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 83/193 (43%), Positives = 116/193 (60%), Gaps = 3/193 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + +AG+DE GRGALAGPV A+IL P + +NDSK ++ ++REEL+ Sbjct: 13 ERERELWYY-FKYIAGVDEAGRGALAGPVYSGAVILPPFSSIP-VNDSKLLTPREREELF 70 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I ++ S A+ + I+K I +AT A+ AVE L++ P LIDG D+ Sbjct: 71 EIIKKESLCWSFGYATVEEIEKFGILQATFLAMKRAVEGLEIKPEYLLIDGNIPIPDIDI 130 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 V+KGD LSIA+ASI+AKV RD+ M+ K+YP+YGF H GY T +H++ IK+ Sbjct: 131 PQETVVKGDRRCLSIASASIVAKVLRDKYMKELDKEYPEYGFGKHKGYATKEHREKIKDL 190 Query: 192 GPSCIHRLTFRPL 204 G IHR F+ L Sbjct: 191 GTLVIHRKGFKLL 203 >gi|114776989|ref|ZP_01452009.1| ribonuclease HII [Mariprofundus ferrooxydans PV-1] gi|114552510|gb|EAU54970.1| ribonuclease HII [Mariprofundus ferrooxydans PV-1] Length = 185 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 114/184 (61%), Gaps = 3/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG LAGPVV AA+IL P++ G DSKK++ KKR +LY I A+ ++ Sbjct: 2 LAGVDEVGRGPLAGPVVTAAVILSPDDPYLGQYRDSKKVAEKKRLKLYHHIRKHAVAYTV 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A+ + ID NI AT+ ++ +VE L V P ++DG IP DL A A+I GD + Sbjct: 62 TMATVEEIDHLNILHATMLSMRRSVEGLAVRPVRVVVDGNRIP-DLTMPAEAIIGGDDLV 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 IAAASIIAKV RDRLM + ++P Y F H GY T H ++E GP HR +F P Sbjct: 121 QEIAAASIIAKVVRDRLMAMLDVRHPGYQFTKHKGYGTKVHMDALREHGPCPAHRRSFAP 180 Query: 204 LRNL 207 + L Sbjct: 181 VTKL 184 >gi|27467840|ref|NP_764477.1| RNase HII [Staphylococcus epidermidis ATCC 12228] gi|57866704|ref|YP_188394.1| ribonuclease HII [Staphylococcus epidermidis RP62A] gi|282876322|ref|ZP_06285189.1| ribonuclease HII [Staphylococcus epidermidis SK135] gi|38258563|sp|Q8CPH6|RNH2_STAES RecName: Full=Ribonuclease HII; Short=RNase HII gi|71153705|sp|Q5HPU6|RNH2_STAEQ RecName: Full=Ribonuclease HII; Short=RNase HII gi|27315385|gb|AAO04519.1|AE016747_16 RNase HII [Staphylococcus epidermidis ATCC 12228] gi|57637362|gb|AAW54150.1| ribonuclease HII [Staphylococcus epidermidis RP62A] gi|281295347|gb|EFA87874.1| ribonuclease HII [Staphylococcus epidermidis SK135] gi|329724332|gb|EGG60844.1| ribonuclease HII [Staphylococcus epidermidis VCU144] gi|329736260|gb|EGG72532.1| ribonuclease HII [Staphylococcus epidermidis VCU028] gi|329736540|gb|EGG72806.1| ribonuclease HII [Staphylococcus epidermidis VCU045] Length = 256 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 78/184 (42%), Positives = 115/184 (62%), Gaps = 3/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + GIDEVGRG LAGPVV A+IL+ N+ G++DSKK+S K R L + + + + Sbjct: 73 LICGIDEVGRGPLAGPVVACAVILEKNHHYIGLDDSKKVSPKNRARLNQNLKENVYQYAY 132 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 AS ID+ NI++AT A+ A+ L V P LID ++ D+ ++IKGD+ S Sbjct: 133 GIASSVEIDELNIYRATQLAMLRAINQLDVTPTHLLIDAMTL--DIDIPQTSIIKGDAKS 190 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +SIAAASI+AK RD+ MR K++P+YGFD + GY T +H + I + G HR +F P Sbjct: 191 VSIAAASIMAKEYRDQYMRQLSKQFPEYGFDKNAGYGTKQHLKAIDQVGIINEHRQSFEP 250 Query: 204 LRNL 207 ++++ Sbjct: 251 IKSM 254 >gi|138894726|ref|YP_001125179.1| ribonuclease HII [Geobacillus thermodenitrificans NG80-2] gi|196247655|ref|ZP_03146357.1| Ribonuclease H [Geobacillus sp. G11MC16] gi|166225189|sp|A4IM80|RNH2_GEOTN RecName: Full=Ribonuclease HII; Short=RNase HII gi|134266239|gb|ABO66434.1| Ribonuclease HII [Geobacillus thermodenitrificans NG80-2] gi|196212439|gb|EDY07196.1| Ribonuclease H [Geobacillus sp. G11MC16] Length = 259 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 85/195 (43%), Positives = 116/195 (59%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + +AGIDE GRG LAGPVV AA+IL + G++DSK+++ KRE L+ Sbjct: 61 RYERELYAAGIERIAGIDEAGRGPLAGPVVAAAVILPKDAYLPGLDDSKRLTPAKREALF 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ I + S ID+ NI++AT A+ AV L P L+D ++P LP Sbjct: 121 AQIEECAVAIGVGIVSAAEIDEWNIYEATKQAMAKAVAALSPSPEHLLVDAMTVPCALP- 179 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S SIAAASIIAKVTRDR M ++YP YGF H+GY T +H I+ Sbjct: 180 -QQRLIKGDANSASIAAASIIAKVTRDRWMHELDRRYPQYGFARHMGYGTPEHLAAIRRY 238 Query: 192 GPSCIHRLTFRPLRN 206 G + HR +F P+R Sbjct: 239 GVTDEHRRSFAPVRE 253 >gi|289675278|ref|ZP_06496168.1| ribonuclease HII [Pseudomonas syringae pv. syringae FF5] Length = 198 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 82/174 (47%), Positives = 108/174 (62%), Gaps = 2/174 (1%) Query: 33 GRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYI 91 GRG L G VV AA+ILDP G+NDSKK++ +RE+L+ +I A+ I+ A + I Sbjct: 2 GRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKLFVEIQEKALCWFIARAEVEEI 61 Query: 92 DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASI 151 D+ NI AT+ A+ AVE L + PR ALIDG P+ L + V+KGDS +IAAASI Sbjct: 62 DQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQ-LSVPSAPVVKGDSKVPAIAAASI 120 Query: 152 IAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 +AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P+R Sbjct: 121 LAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPVR 174 >gi|224476370|ref|YP_002633976.1| ribonuclease HII [Staphylococcus carnosus subsp. carnosus TM300] gi|254807988|sp|B9DPH3|RNH2_STACT RecName: Full=Ribonuclease HII; Short=RNase HII gi|222420977|emb|CAL27791.1| putative RNase HII [Staphylococcus carnosus subsp. carnosus TM300] Length = 261 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 83/204 (40%), Positives = 123/204 (60%), Gaps = 4/204 (1%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E +E E ++ + + GIDEVGRG LAGPVV A+IL+ ++ +G++DSKK+S Sbjct: 56 EEMTRYE-ENILSDNPEAVICGIDEVGRGPLAGPVVACAVILNADHAYYGLDDSKKVSAA 114 Query: 67 KREELYE-KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 R++L E I + + A+ + ID NI++AT A+ A+ENL V P LID + Sbjct: 115 NRQKLSEALIEKTTAYAYGIATPEEIDDLNIYQATQVAMMRAIENLNVTPTHLLIDAMEL 174 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P L ++IKGD+ S+SIAAASI+AK RD MR ++YP Y F+ +VGY T H Sbjct: 175 P--LDIAQTSIIKGDAKSVSIAAASILAKEHRDTYMRQLAEQYPGYDFEHNVGYGTKAHL 232 Query: 186 QVIKEKGPSCIHRLTFRPLRNLSV 209 + IK G HR +F P++++ + Sbjct: 233 EGIKRLGIIPEHRKSFEPIKSIVL 256 >gi|327313027|ref|YP_004328464.1| ribonuclease HII [Prevotella denticola F0289] gi|326944091|gb|AEA19976.1| ribonuclease HII [Prevotella denticola F0289] Length = 200 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 104/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL P ++DSKK++ +KR L + I A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPPGYQNSLLDDSKKLTARKRYALRDTIEHDAVAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI A+ A++ A++ L+V P + ++DG +IKGD LS Sbjct: 73 VTPEEIDRINILNASFLAMHRALDQLKVRPEAVIVDGNRFTPYRKLPFATIIKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M ++YP Y + ++GYPT KH+Q I+E G + HR ++ L Sbjct: 133 IAAASILAKTYRDDYMCSLAEEYPQYDWQKNMGYPTKKHRQAIREYGITPYHRRSYNLL 191 >gi|150390501|ref|YP_001320550.1| ribonuclease H [Alkaliphilus metalliredigens QYMF] gi|189043609|sp|A6TRS3|RNH2_ALKMQ RecName: Full=Ribonuclease HII; Short=RNase HII gi|149950363|gb|ABR48891.1| Ribonuclease H [Alkaliphilus metalliredigens QYMF] Length = 204 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 82/198 (41%), Positives = 115/198 (58%), Gaps = 9/198 (4%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 E+E + E+ +AG DEVGRG L G V+ A +IL + G+ DSKK+S K+REE Sbjct: 3 RLEIENQLWEEGYESIAGCDEVGRGCLFGSVLAATVILPKGLLIEGVKDSKKLSPKRREE 62 Query: 71 LYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENL------QVIPRSALIDGR 123 LYE I +AI + S + ID+ NI +A+ A+ +V +L IP L+D Sbjct: 63 LYEVIKKNAIAMGVGIISAEVIDQINIRQASRLAMKKSVLSLTTIDGESKIPDYILVDAE 122 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +I D+ A+IKGD S IAAASI+AKV RDRL ++YP+YG H GY T Sbjct: 123 NI--DIAIPQSAIIKGDDRSQGIAAASIVAKVIRDRLCIRWDEEYPNYGIAQHKGYGTKL 180 Query: 184 HQQVIKEKGPSCIHRLTF 201 H++ + + GPS +HR +F Sbjct: 181 HREALLKYGPSELHRRSF 198 >gi|241662957|ref|YP_002981317.1| ribonuclease HII [Ralstonia pickettii 12D] gi|309782124|ref|ZP_07676854.1| ribonuclease HII [Ralstonia sp. 5_7_47FAA] gi|240864984|gb|ACS62645.1| Ribonuclease H [Ralstonia pickettii 12D] gi|308919190|gb|EFP64857.1| ribonuclease HII [Ralstonia sp. 5_7_47FAA] Length = 232 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 80/205 (39%), Positives = 117/205 (57%), Gaps = 6/205 (2%) Query: 7 PERPHFELEAMVREKNMWPV-AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 P++ L K + G+DE GRG LAGPV AA++L+P G+ DSK ++ Sbjct: 8 PDQLGLLLSQEPAAKRARRILCGVDEAGRGPLAGPVTAAAVVLNPRKPIKGLADSKILTA 67 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAV---ENLQVIPRSALID 121 KKRE LY++I A+ ++ A+ + ID+ NI AT+ A+ AV L +P +D Sbjct: 68 KKREALYDEIVEKALAWHVAEATVEEIDRINILHATMLAMQRAVHGVAALGTLPDLVQVD 127 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 G P+ + AV+KGD++ +I+AASI+AKVTRDR + H ++P YGFD H GY T Sbjct: 128 GNRCPQ-VAFAVEAVVKGDALVPAISAASILAKVTRDRQLAALHVEFPLYGFDVHAGYGT 186 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRN 206 +H I G + HR +F P+R Sbjct: 187 PQHLAAIDLHGVTPHHRRSFAPVRR 211 >gi|219669769|ref|YP_002460204.1| ribonuclease HII [Desulfitobacterium hafniense DCB-2] gi|254807972|sp|B8FRK8|RNH2_DESHD RecName: Full=Ribonuclease HII; Short=RNase HII gi|219540029|gb|ACL21768.1| Ribonuclease H [Desulfitobacterium hafniense DCB-2] Length = 260 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 86/196 (43%), Positives = 114/196 (58%), Gaps = 2/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +AGIDE GRG LAGPVV A IL G+NDSKK++ KRE+L Sbjct: 61 LREEKQLWLNGYLHIAGIDEAGRGPLAGPVVAATCILPAKFNLPGLNDSKKLTESKREKL 120 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +++I AI ++ SA ID NI +AT A+ AVE L+V P LID +P L Sbjct: 121 FQQIKEQAIGYAVGSAEPAEIDGLNILQATKLAMKRAVEGLKVRPHFLLIDALELP-SLK 179 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD++S SIAAASI+AKV+RD LM K YP+YGF + GY T +H ++ Sbjct: 180 IPQKGIIDGDALSASIAAASILAKVSRDHLMGELDKLYPEYGFAKNKGYGTREHLMALRR 239 Query: 191 KGPSCIHRLTFRPLRN 206 G S IHR +F P++ Sbjct: 240 HGVSPIHRRSFAPVQQ 255 >gi|192358895|ref|YP_001981622.1| ribonuclease HII [Cellvibrio japonicus Ueda107] gi|190685060|gb|ACE82738.1| ribonuclease HII [Cellvibrio japonicus Ueda107] Length = 204 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 87/194 (44%), Positives = 122/194 (62%), Gaps = 2/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + +AG DEVGRG LAG VV AA+ILDP G++DSKK++ KKRE+L+ Sbjct: 3 QFEPFISVYQGHLLAGCDEVGRGPLAGDVVAAAVILDPGQSIIGLDDSKKLTEKKREQLF 62 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I + A+ I+ AS + ID+ NI +A+L A+ AV+ L + P L+DG +P+ Sbjct: 63 DEIRAKALSWCIARASVEEIDRLNILQASLLAMTRAVQGLAIQPEHVLVDGNKLPK-WHY 121 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A AV+KGDS +I+AASI+AKVTRDR M YP YGF H GYPT H ++ Sbjct: 122 SAEAVVKGDSRVAAISAASILAKVTRDREMVEMDSYYPGYGFAGHKGYPTKVHLDALERL 181 Query: 192 GPSCIHRLTFRPLR 205 G S IHR ++ P++ Sbjct: 182 GVSPIHRSSYAPVK 195 >gi|16124634|ref|NP_419198.1| ribonuclease HII [Caulobacter crescentus CB15] gi|13421536|gb|AAK22366.1| ribonuclease HII [Caulobacter crescentus CB15] Length = 205 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 91/185 (49%), Positives = 111/185 (60%), Gaps = 2/185 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 PV G+DE GRG AGPV A+ILDP+ IP G+NDSKK+S K R L E+I AI Sbjct: 8 GQAPVCGVDEAGRGPWAGPVSAGAVILDPDRIPKGLNDSKKLSAKARAALEEEIKDVAIS 67 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 + AS + I + NI A A+ AVE L V P AL+DG LPC VIKGD Sbjct: 68 WCVGLASIEEIAQLNILHAAGLAMRRAVEGLAVTPAFALVDGN-YAFKLPCPVKTVIKGD 126 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+S SIAAASI+AK RDR+M A YP YGF H GY H + ++ GPS IHRL Sbjct: 127 SLSCSIAAASILAKEARDRIMIEADALYPGYGFAGHKGYHAKVHVEGLRRLGPSPIHRLG 186 Query: 201 FRPLR 205 + P++ Sbjct: 187 WAPVK 191 >gi|163856833|ref|YP_001631131.1| ribonuclease HII [Bordetella petrii DSM 12804] gi|163260561|emb|CAP42863.1| rnhB [Bordetella petrii] Length = 187 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 83/181 (45%), Positives = 111/181 (61%), Gaps = 2/181 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG LAG V AA+ILDP G+ DSK ++ ++REEL I A+ ++S Sbjct: 2 AGVDEAGRGPLAGGVYAAAVILDPGRPVDGLADSKVLTAERREELAAHIQERALAWCVAS 61 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A+ ID NI +ATL A+ AV+ L P+ A++DG P L C VIKGD++ + Sbjct: 62 ATVLEIDTLNILRATLLAMQRAVDGLGQAPQVAMVDGNQAPT-LRCTVQTVIKGDALVPA 120 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AK RD ++ H YP YGFD H GY TA H Q ++E GP HR +F P+R Sbjct: 121 ISAASILAKTARDADLQRLHALYPQYGFDQHKGYGTALHMQRLREHGPCPEHRRSFAPVR 180 Query: 206 N 206 Sbjct: 181 E 181 >gi|332878922|ref|ZP_08446637.1| ribonuclease HII [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683273|gb|EGJ56155.1| ribonuclease HII [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 198 Score = 241 bits (615), Expect = 5e-62, Method: Composition-based stats. Identities = 69/186 (37%), Positives = 105/186 (56%), Gaps = 3/186 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL P+ + DSK+++ K+R++L I A+ ++ Sbjct: 12 AGTDEAGRGCLAGPVTAAAVILPPDFHNELLTDSKQLTEKQRDQLRPIIEREAVAYAVCH 71 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ID+ NI +A++ A++ A+ L V+P +DG V+KGD + Sbjct: 72 VLPAEIDELNILRASITAMHRAIAQLSVVPTFIAVDGNKFVRYAQIPYACVVKGDGKIQT 131 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR--P 203 IAAASI+AK RD M ++P+Y + + GYPT +H++ I E G + HR TF+ P Sbjct: 132 IAAASILAKTYRDAYMSDLALQFPEYHWQQNKGYPTPEHRRAIAEYGATPHHRKTFQLLP 191 Query: 204 LRNLSV 209 + LS+ Sbjct: 192 VEQLSL 197 >gi|33592531|ref|NP_880175.1| ribonuclease HII [Bordetella pertussis Tohama I] gi|33596188|ref|NP_883831.1| ribonuclease HII [Bordetella parapertussis 12822] gi|33601596|ref|NP_889156.1| ribonuclease HII [Bordetella bronchiseptica RB50] gi|39932320|sp|Q7VYB6|RNH2_BORPE RecName: Full=Ribonuclease HII; Short=RNase HII gi|39932326|sp|Q7WA46|RNH2_BORPA RecName: Full=Ribonuclease HII; Short=RNase HII gi|39932331|sp|Q7WJ80|RNH2_BORBR RecName: Full=Ribonuclease HII; Short=RNase HII gi|33572177|emb|CAE41723.1| ribonuclease HII [Bordetella pertussis Tohama I] gi|33573191|emb|CAE36843.1| ribonuclease HII [Bordetella parapertussis] gi|33576032|emb|CAE33112.1| ribonuclease HII [Bordetella bronchiseptica RB50] gi|332381949|gb|AEE66796.1| ribonuclease HII [Bordetella pertussis CS] Length = 201 Score = 241 bits (615), Expect = 5e-62, Method: Composition-based stats. Identities = 80/182 (43%), Positives = 113/182 (62%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DE GRG LAG V AA+ILDP+ G+ DSK + ++RE L +I + A+ + Sbjct: 16 IIAGVDEAGRGPLAGAVYAAAVILDPDRPVDGLADSKVLKAEQREALAVQIRAQALAWFV 75 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS Q ID NI +AT+ A+ AV L + P A++DG P+ L C VIKGD++ Sbjct: 76 ASASVQEIDSLNILRATMLAMQRAVAGLAMAPELAMVDGNQAPK-LRCAVQTVIKGDALV 134 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AK RD + H YP YGFD H GY T +H +++E GP HR +F P Sbjct: 135 PAISAASILAKTARDADLLRLHALYPQYGFDQHKGYGTPQHLSLLREHGPCPEHRRSFAP 194 Query: 204 LR 205 ++ Sbjct: 195 IK 196 >gi|261364835|ref|ZP_05977718.1| ribonuclease HII [Neisseria mucosa ATCC 25996] gi|288566876|gb|EFC88436.1| ribonuclease HII [Neisseria mucosa ATCC 25996] Length = 196 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 77/184 (41%), Positives = 109/184 (59%), Gaps = 1/184 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 +AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L I A+ Sbjct: 5 LLAGVDEAGRGPLVGSVFAAAVILPERYDLPGLTDSKKLSEKKRDTLAVLIKEQAVSWSV 64 Query: 85 SASH-QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +++ + I + NI AT+ A+ AV+ L V+P LIDG +P+DL A A++KGDS Sbjct: 65 ASASSEEIAELNILHATMLAMTRAVQGLVVVPDKVLIDGNRVPKDLGIPAEAIVKGDSKI 124 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M ++YP YGFD H GY TA+H +++ G HR F P Sbjct: 125 IEISAASVLAKTARDAEMYALAERYPQYGFDQHKGYGTAQHLAALQKYGVLPEHRRDFAP 184 Query: 204 LRNL 207 ++ L Sbjct: 185 VKAL 188 >gi|297584021|ref|YP_003699801.1| ribonuclease H [Bacillus selenitireducens MLS10] gi|297142478|gb|ADH99235.1| Ribonuclease H [Bacillus selenitireducens MLS10] Length = 258 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 83/197 (42%), Positives = 114/197 (57%), Gaps = 5/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E +R +AG+DEVGRG LAGPV A +IL + G+ DSKK+S KR Sbjct: 58 SFERSLRLSGYRLIAGVDEVGRGPLAGPVTAACVILPESPDLKGLTDSKKLSEAKRHFYA 117 Query: 73 EKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVI--PRSALIDGRSIPEDL 129 +I AI + AS + ID+ NI++A+ A+ AV +Q LID ++P DL Sbjct: 118 AEIQKVAIAAETGEASPEEIDRLNIYEASKLAMRRAVAAVQQKTAIDFLLIDAMTLPIDL 177 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P ++IKGD+ SLSIAAAS+IAKV RD M+ + +P+YG SH+GY T +H + Sbjct: 178 P--QESLIKGDARSLSIAAASVIAKVERDNQMKELDRAFPEYGLASHMGYGTREHLAALD 235 Query: 190 EKGPSCIHRLTFRPLRN 206 E GP HR +F P+R Sbjct: 236 EHGPQFFHRKSFSPVRE 252 >gi|332981643|ref|YP_004463084.1| Ribonuclease H [Mahella australiensis 50-1 BON] gi|332699321|gb|AEE96262.1| Ribonuclease H [Mahella australiensis 50-1 BON] Length = 191 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 82/178 (46%), Positives = 113/178 (63%), Gaps = 2/178 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG LAGPV+ AA+IL G+ DSKK++ K+R+ L++ I A+ ++I Sbjct: 5 YVAGVDEVGRGPLAGPVMAAAVILPAGLHIDGLRDSKKLTPKQRQYLHDIILDKALAVAI 64 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +S H+ ID+ NI A L+ + AV +L + P ++DGR D+ AVI GD + Sbjct: 65 ASVDHERIDEINIRMAALEVMKQAVLSLSIQPDRVMVDGRDT-LDITIPQQAVIGGDDLV 123 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I+AAS++AKVTRDRLM H KYP Y F + GY T KH + I+E G IHR+TF Sbjct: 124 ACISAASVVAKVTRDRLMVQYHDKYPQYDFIHNKGYGTQKHIEAIREYGICPIHRITF 181 >gi|158320503|ref|YP_001513010.1| ribonuclease H [Alkaliphilus oremlandii OhILAs] gi|189043610|sp|A8MHC7|RNH2_ALKOO RecName: Full=Ribonuclease HII; Short=RNase HII gi|158140702|gb|ABW19014.1| Ribonuclease H [Alkaliphilus oremlandii OhILAs] Length = 203 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 85/200 (42%), Positives = 120/200 (60%), Gaps = 9/200 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 P ++E+ + +A DEVGRG L G V+ AA+I+ + I G+ DSKK+SHKKR Sbjct: 1 MPTIDIESAIWNSGYENIACCDEVGRGCLFGSVLAAAVIMPKDVIIDGVKDSKKLSHKKR 60 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALID 121 E+LYE I ++ I + + S + IDK NI AT A+ A+ +L+ V P LID Sbjct: 61 EQLYEIIKEKSLAIGVGTVSSEIIDKINIKNATRLAMKKAILSLKDKDGNIVAPDYILID 120 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 I D+P AVIKGD + IAAASI+AKV RDRL + +++P+YG + GY T Sbjct: 121 AEEI--DVPTPQSAVIKGDDLCHGIAAASIVAKVLRDRLCQRWEEEHPNYGIGQNKGYGT 178 Query: 182 AKHQQVIKEKGPSCIHRLTF 201 H++ +KE GPS +HR +F Sbjct: 179 KAHREALKEHGPSPMHRKSF 198 >gi|254414639|ref|ZP_05028404.1| ribonuclease HII [Microcoleus chthonoplastes PCC 7420] gi|196178487|gb|EDX73486.1| ribonuclease HII [Microcoleus chthonoplastes PCC 7420] Length = 211 Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats. Identities = 85/186 (45%), Positives = 118/186 (63%), Gaps = 5/186 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI 80 +AG+DEVGRGAL GPVV AA+IL + +P G+ DSK+++ +R++L ++I A+ Sbjct: 21 LIAGVDEVGRGALFGPVVAAAVILPASTLPNLAGSGMKDSKQLTRLRRQKLAQEIQELAV 80 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 SI A+ ID+ NI +A+L A+ AV L+V P LIDGR LP ++IKG Sbjct: 81 DWSIGYATSTEIDQINILQASLLAMKRAVLKLKVQPDLCLIDGRQALVGLPVPQKSLIKG 140 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D SL IAAASI+AKV RD L+ KYPDY ++ GY T +H+ ++E GPS HR Sbjct: 141 DQRSLEIAAASIVAKVWRDDLVGRLATKYPDYDLAANKGYGTERHRLALQEFGPSPQHRR 200 Query: 200 TFRPLR 205 +FRP + Sbjct: 201 SFRPCQ 206 >gi|229552204|ref|ZP_04440929.1| ribonuclease H [Lactobacillus rhamnosus LMS2-1] gi|258539618|ref|YP_003174117.1| ribonuclease HII [Lactobacillus rhamnosus Lc 705] gi|229314426|gb|EEN80399.1| ribonuclease H [Lactobacillus rhamnosus LMS2-1] gi|257151294|emb|CAR90266.1| Ribonuclease HII [Lactobacillus rhamnosus Lc 705] Length = 252 Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats. Identities = 85/194 (43%), Positives = 119/194 (61%), Gaps = 5/194 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + VAG+DEVGRG LAGPVV AA+IL P+ + +NDSK+++ +R+ LY Sbjct: 58 RYERKLWTM-YSHVAGLDEVGRGPLAGPVVTAAVIL-PHQFKWPVNDSKQLTAHERDVLY 115 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I + AI + I A + ID+ NI+ AT A+ AV +L+V P L+D +P +LP Sbjct: 116 PHILTEAIAVGIGVADNHEIDRENIYHATELAMAQAVSHLRVAPEFLLVDAMHVPVNLP- 174 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S+SIAAASI+AKV RDRLM + + YP Y F ++GY T H + Sbjct: 175 -QERLIKGDANSISIAAASIVAKVIRDRLMVMYDQVYPGYDFKDNMGYGTKAHLAGLAAH 233 Query: 192 GPSCIHRLTFRPLR 205 G + IHR +F P+R Sbjct: 234 GVTPIHRRSFGPVR 247 >gi|256819586|ref|YP_003140865.1| ribonuclease HII [Capnocytophaga ochracea DSM 7271] gi|256581169|gb|ACU92304.1| Ribonuclease H [Capnocytophaga ochracea DSM 7271] Length = 198 Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats. Identities = 69/186 (37%), Positives = 103/186 (55%), Gaps = 3/186 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL P+ + DSK+++ K+R L I S A+ ++ Sbjct: 12 AGTDEAGRGCLAGPVTAAAVILPPDFKNDLLTDSKQLTEKQRNLLRPIIESEAVAYAVCH 71 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ID+ NI +A++ A++ A+ L P +DG V+KGD + Sbjct: 72 VLPAEIDELNILRASITAMHRAIAQLSPTPEFIAVDGNKFVPYQKIPYACVVKGDGKIQT 131 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR--P 203 IAAASI+AK RD M +++P+Y + + GYPT +H++ I E G + HR TF+ P Sbjct: 132 IAAASILAKTYRDAYMEDLAQQFPEYHWQQNKGYPTPEHRKAIAEYGATEHHRKTFQLLP 191 Query: 204 LRNLSV 209 + LS+ Sbjct: 192 VEQLSL 197 >gi|332519701|ref|ZP_08396165.1| Ribonuclease H [Lacinutrix algicola 5H-3-7-4] gi|332044260|gb|EGI80454.1| Ribonuclease H [Lacinutrix algicola 5H-3-7-4] Length = 199 Score = 240 bits (614), Expect = 7e-62, Method: Composition-based stats. Identities = 73/195 (37%), Positives = 102/195 (52%), Gaps = 12/195 (6%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 FE E G DE GRG LAGPV AA+IL +NDSKK+S KRE Sbjct: 8 SFEFE-----------CGTDEAGRGCLAGPVTAAAVILPKKFKNNILNDSKKLSKGKREL 56 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L I + AI + + ID+ NI A++ A+ ++ L P ++DG Sbjct: 57 LKPIIENEAICYAFTHVYENEIDEINILNASILAMQRSILELNPKPEFIIVDGNRFKPLN 116 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +IKGDS LSIAAAS++AK RD M H+++P Y + + GYPT +H++ I+ Sbjct: 117 NIPFETIIKGDSKYLSIAAASVLAKTYRDAYMLKIHEEFPMYNWKKNKGYPTKEHREAIR 176 Query: 190 EKGPSCIHRLTFRPL 204 + G + HR +FR L Sbjct: 177 KYGITKYHRKSFRLL 191 >gi|187928381|ref|YP_001898868.1| ribonuclease HII [Ralstonia pickettii 12J] gi|238691815|sp|B2UBB5|RNH2_RALPJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|187725271|gb|ACD26436.1| Ribonuclease H [Ralstonia pickettii 12J] Length = 232 Score = 240 bits (614), Expect = 7e-62, Method: Composition-based stats. Identities = 78/205 (38%), Positives = 118/205 (57%), Gaps = 6/205 (2%) Query: 7 PERPHFELEAMVREKNMWPV-AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 P++ L K + G+DE GRG LAGPV AA++L+P G+ DSK ++ Sbjct: 8 PDQLGLLLSQEPAAKRARRILCGVDEAGRGPLAGPVTAAAVVLNPRKPIKGLADSKILTA 67 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVEN---LQVIPRSALID 121 +KRE LY++I A+ ++ A+ + ID+ NI AT+ A+ AV+ L +P +D Sbjct: 68 RKREALYDEIVEKALAWHVAEATVEEIDRINILHATMLAMQRAVQGVAALGTLPDLVQVD 127 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 G P+ + A++KGD++ +I+AASI+AKVTRDR + H ++P YGFD H GY T Sbjct: 128 GNRCPQ-VAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIEFPLYGFDVHAGYGT 186 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRN 206 +H I G + HR +F P+R Sbjct: 187 PQHLAAIDLHGVTPHHRRSFAPVRR 211 >gi|191638395|ref|YP_001987561.1| ribonuclease HII [Lactobacillus casei BL23] gi|238693037|sp|B3WEA2|RNH2_LACCB RecName: Full=Ribonuclease HII; Short=RNase HII gi|190712697|emb|CAQ66703.1| Ribonuclease HII (RNase HII) [Lactobacillus casei BL23] gi|327382424|gb|AEA53900.1| hypothetical protein LC2W_1567 [Lactobacillus casei LC2W] gi|327385624|gb|AEA57098.1| hypothetical protein LCBD_1601 [Lactobacillus casei BD-II] Length = 252 Score = 240 bits (614), Expect = 7e-62, Method: Composition-based stats. Identities = 86/195 (44%), Positives = 120/195 (61%), Gaps = 5/195 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + VAG+DEVGRG LAGPVV AA+IL + + +NDSK+++ +R LY Sbjct: 58 RYERQLWGT-YEYVAGLDEVGRGPLAGPVVTAAVILPHHF-QWPVNDSKQLTAHERNVLY 115 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I + AI + I A ++ ID+ NI+ AT A+ AV++L+V P L+D +P DLP Sbjct: 116 PHILTEAIAVGIGVADNRTIDRENIYHATELAMAQAVDHLRVAPECLLVDAMHVPVDLP- 174 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S+SIAAASI+AKV RDRLM + K YP Y F ++GY T H + Sbjct: 175 -QKRLIKGDANSISIAAASIVAKVIRDRLMMMYDKIYPGYDFKDNMGYGTKAHLAGLAAH 233 Query: 192 GPSCIHRLTFRPLRN 206 G + IHR +F P+R+ Sbjct: 234 GVTPIHRRSFGPVRD 248 >gi|78485616|ref|YP_391541.1| ribonuclease H [Thiomicrospira crunogena XCL-2] gi|97189437|sp|Q31G56|RNH2_THICR RecName: Full=Ribonuclease HII; Short=RNase HII gi|78363902|gb|ABB41867.1| RNase HII [Thiomicrospira crunogena XCL-2] Length = 207 Score = 240 bits (614), Expect = 7e-62, Method: Composition-based stats. Identities = 78/184 (42%), Positives = 113/184 (61%), Gaps = 3/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + G+DEVGRG L G VV AA+IL + DSKK+S KRE + +I AI I Sbjct: 19 FIVGVDEVGRGPLVGDVVAAAVILPKGCELL-LKDSKKLSESKRELIAHQIQQEAIDFCI 77 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 ++AS ID NI AT+ A+ AVE L + L+DG P ++P + A++KGD Sbjct: 78 ATASPDEIDSLNILHATMLAMKRAVEGLNNPIKKVLVDGNRCP-NVPYECEAIVKGDGKV 136 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RD+ M++ H+ YP+YGFD+H GYPT H + + + G +R +F+P Sbjct: 137 PVISAASILAKVHRDQQMQVLHEAYPEYGFDAHKGYPTKLHLEKLSQHGLIPGYRRSFKP 196 Query: 204 LRNL 207 ++N+ Sbjct: 197 VKNI 200 >gi|152995315|ref|YP_001340150.1| ribonuclease H [Marinomonas sp. MWYL1] gi|189043694|sp|A6VUT6|RNH2_MARMS RecName: Full=Ribonuclease HII; Short=RNase HII gi|150836239|gb|ABR70215.1| Ribonuclease H [Marinomonas sp. MWYL1] Length = 199 Score = 240 bits (614), Expect = 8e-62, Method: Composition-based stats. Identities = 88/184 (47%), Positives = 121/184 (65%), Gaps = 1/184 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG DE GRG LAG VV AA+ILDP G+ DSKK+S KKRE L+ +I A+ I Sbjct: 13 LLAGTDEAGRGPLAGEVVAAAVILDPAQPITGLADSKKLSEKKREALFVEIQEKALAYGI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A+ + ID+ NI A++ A+ AV L + P L+DG IP +LPC A AV+KGD+ Sbjct: 73 ARATIEEIDELNILHASMLAMSRAVALLSIEPEYVLVDGNRIPPNLPCSAEAVVKGDARH 132 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKVTRDR + + YP+YGF+ H GYPTA H + I+ G + IHR +F P Sbjct: 133 AAISAASILAKVTRDRDIVQVAQIYPEYGFEKHKGYPTALHLEAIRLHGITPIHRRSFGP 192 Query: 204 LRNL 207 ++ + Sbjct: 193 VKKI 196 >gi|294661258|ref|YP_003573134.1| hypothetical protein Aasi_1724 [Candidatus Amoebophilus asiaticus 5a2] gi|227336409|gb|ACP21006.1| hypothetical protein Aasi_1724 [Candidatus Amoebophilus asiaticus 5a2] Length = 196 Score = 240 bits (614), Expect = 8e-62, Method: Composition-based stats. Identities = 78/182 (42%), Positives = 104/182 (57%), Gaps = 1/182 (0%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG DEVGRG LAGPVV AA+IL F + DSKK++ K+R E+ I AI + Sbjct: 7 QLVAGCDEVGRGCLAGPVVAAAVILPLQYYYFLLKDSKKLTPKQRIEIAAIIKKEAIDWA 66 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I A+ + ID+ NI AT A++ A+ L V P LIDG + ++KGD Sbjct: 67 IGCATPEEIDQVNISNATHLAMHRAINKLIVKPELLLIDGNKFLPYPNIEHECIVKGDKK 126 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SIAAASII KV RD M+ ++ P Y ++ ++GYPT +H Q I E G S HR +F Sbjct: 127 VNSIAAASIIDKVYRDEYMQELAEREPGYNWEINMGYPTKEHYQAIYELGMSFHHRKSFS 186 Query: 203 PL 204 + Sbjct: 187 LV 188 >gi|301103372|ref|XP_002900772.1| ribonuclease HII [Phytophthora infestans T30-4] gi|262101527|gb|EEY59579.1| ribonuclease HII [Phytophthora infestans T30-4] Length = 249 Score = 240 bits (613), Expect = 9e-62, Method: Composition-based stats. Identities = 89/199 (44%), Positives = 112/199 (56%), Gaps = 7/199 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E K V G+DE GRG LAGPVV AA + + GI+DSKKI +RE L+E Sbjct: 35 FETRYEAKGYTTVIGVDEAGRGPLAGPVVAAACHVPLDVTIAGIDDSKKILEPQREALFE 94 Query: 74 KITSSA--IISISSASHQYIDKHNIHKATLDAIYHAVENLQVI-----PRSALIDGRSIP 126 +TS ++ S Q ID NI +A+L+++ +V + L+DG +P Sbjct: 95 LLTSHPNITYAVHVNSPQRIDDINILQASLESMTKSVNEVAQQLQQKDKTFVLVDGNKLP 154 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 L A AV+KGDS SIAAASIIAKVTRDRLMR K+P YG H GYPT H Sbjct: 155 PTLELPAEAVVKGDSKVYSIAAASIIAKVTRDRLMREYDVKFPQYGLAQHKGYPTRDHVA 214 Query: 187 VIKEKGPSCIHRLTFRPLR 205 I + GP IHR+TF PL+ Sbjct: 215 AIAKHGPCEIHRMTFAPLK 233 >gi|239631517|ref|ZP_04674548.1| ribonuclease HII [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525982|gb|EEQ64983.1| ribonuclease HII [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 252 Score = 240 bits (613), Expect = 9e-62, Method: Composition-based stats. Identities = 86/195 (44%), Positives = 121/195 (62%), Gaps = 5/195 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + VAG+DEVGRG LAGPVV AA+IL + + +NDSK+++ +R LY Sbjct: 58 RYERQLWGT-YEYVAGLDEVGRGPLAGPVVTAAVILPHHF-QWPVNDSKQLTAHERNVLY 115 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I + AI + I A ++ ID+ NI+ AT A+ AV++L+V P L+D +P DLP Sbjct: 116 PHILTEAIAVGIGVADNRTIDRENIYHATELAMAQAVDHLRVAPECLLVDAMHVPVDLP- 174 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S+SIAAASI+AKV RDRLM++ K YP Y F ++GY T H + Sbjct: 175 -QKRLIKGDANSISIAAASIVAKVIRDRLMKMYDKIYPGYDFKDNMGYGTKAHLAGLAAH 233 Query: 192 GPSCIHRLTFRPLRN 206 G + IHR +F P+R+ Sbjct: 234 GVTPIHRRSFGPVRD 248 >gi|260591769|ref|ZP_05857227.1| ribonuclease HII [Prevotella veroralis F0319] gi|260536053|gb|EEX18670.1| ribonuclease HII [Prevotella veroralis F0319] Length = 200 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 105/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL N +NDSKK+S KKR L + I AI ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPTNYKNDLLNDSKKLSAKKRYALRKIIEHDAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + IDK NI A+ A++ A++ L++ P + ++DG ++KGD LS Sbjct: 73 VTPEEIDKINILNASFLAMHRALDQLKMRPEAIIVDGNRFTPYQDLPFTTIVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M +KYP Y + S++GYPT KH++ I++ G + HR ++ L Sbjct: 133 IAAASILAKTYRDDYMLSLAEKYPQYDWQSNMGYPTKKHREAIRQYGITPFHRKSYNLL 191 >gi|82701801|ref|YP_411367.1| ribonuclease H [Nitrosospira multiformis ATCC 25196] gi|97189026|sp|Q2YB96|RNH2_NITMU RecName: Full=Ribonuclease HII; Short=RNase HII gi|82409866|gb|ABB73975.1| RNase HII [Nitrosospira multiformis ATCC 25196] Length = 199 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 78/189 (41%), Positives = 108/189 (57%), Gaps = 2/189 (1%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 V G+DE GRG LAGPV A +ILDP + G+ DSK ++ KR L I + + Sbjct: 3 SNEYPWVCGVDEAGRGPLAGPVFAACVILDPASPIDGLADSKTLTEGKRNSLTLAIKAYS 62 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 I +I AS + ID+ NI +A+L A+ A+ L V P L+DG P L +++ Sbjct: 63 IAWAIGFASVREIDRLNILQASLLAMKRAIGKLPVTPARVLVDGNHSPR-LKFPVTTIVR 121 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GDS+ I+AASI+AK RD M H+++P YGFD H GY T +H +K G S +HR Sbjct: 122 GDSLVPEISAASILAKTARDAEMMALHRRFPRYGFDQHKGYSTEQHLAALKIHGVSIVHR 181 Query: 199 LTFRPLRNL 207 +F P+R L Sbjct: 182 RSFAPVREL 190 >gi|168061299|ref|XP_001782627.1| predicted protein [Physcomitrella patens subsp. patens] gi|162665860|gb|EDQ52530.1| predicted protein [Physcomitrella patens subsp. patens] Length = 655 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 86/238 (36%), Positives = 114/238 (47%), Gaps = 36/238 (15%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIND---- 59 S+ + P +LE + E VAG+DE GRG LAGPVV AA I+ + G Sbjct: 411 KSLKKFPSRDLEMKLWELGFRNVAGVDEAGRGPLAGPVVAAACIIPASATIPGKICFCVS 470 Query: 60 --SKKISHKKREELYEKITSSAIIS------------------------ISSASHQYIDK 93 S + S +EE Y ++ A I ID+ Sbjct: 471 QWSCRASGPCQEEPYVRLNGVAQWKETFTVHHLWMSRELWCSWFRVAGQIHVVDAAKIDE 530 Query: 94 HNIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL-PCQAFAVIKGDSISLSIA 147 NI +ATL A+ V+ L P LIDG IP++L +A VIKGD+ IA Sbjct: 531 INILQATLLAMSTCVKKLRKERGGEAPDYILIDGNRIPDELSKEEAQFVIKGDAECHVIA 590 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 AASI+AKVTRDR+M +++P YGF +H GY TA H + GP IHR +F PL+ Sbjct: 591 AASILAKVTRDRMMVDYDRRWPVYGFKAHKGYGTAAHIGALLNHGPCDIHRRSFAPLK 648 >gi|188994631|ref|YP_001928883.1| ribonuclease HII [Porphyromonas gingivalis ATCC 33277] gi|238691470|sp|B2RIU1|RNH2_PORG3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|188594311|dbj|BAG33286.1| putative ribonuclease HII [Porphyromonas gingivalis ATCC 33277] Length = 201 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 100/179 (55%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRG LAGPV AA+IL + +NDSK++S K+R L I S AI I Sbjct: 14 CGCDEAGRGCLAGPVYAAAVILPADFSHPLLNDSKQLSEKQRYTLRPVIESEAIGWGIGI 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S Q ID+ NI +A+ A++ A+E L P LIDG ++ GD+ S Sbjct: 74 VSPQEIDEINILRASFLAMHRAIEQLPFRPERLLIDGNRFDPFEQIPHHCIVGGDARYRS 133 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M +K +P YG++ + GYP+ H+ I+ G S HRLTFR + Sbjct: 134 IAAASILAKTYRDDSMLRLNKDFPMYGWERNKGYPSPAHKSAIRRFGVSPHHRLTFRGV 192 >gi|298372107|ref|ZP_06982097.1| ribonuclease HII [Bacteroidetes oral taxon 274 str. F0058] gi|298275011|gb|EFI16562.1| ribonuclease HII [Bacteroidetes oral taxon 274 str. F0058] Length = 207 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 110/179 (61%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA++L + +NDSK+++ K+R+ + I +A+ +++ Sbjct: 19 AGCDEAGRGCLAGPVFAAAVVLSADFECPHLNDSKQLTEKQRQNIRLVIEQNALAWAVAR 78 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + ID NI KA++ ++ A++NL +IP +IDG + + ++KGD LS Sbjct: 79 IDAEEIDNINILKASILCMHKALDNLSIIPEHIIIDGNKFIQYRDVEYKTIVKGDGKYLS 138 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAAS++AK RD M H +YP Y ++ + GYPT+KH+Q IKE G S HR +F+ L Sbjct: 139 IAAASVLAKTHRDDYMSYLHLQYPHYQWNINKGYPTSKHRQAIKEFGISPYHRRSFKLL 197 >gi|227535118|ref|ZP_03965167.1| ribonuclease HII [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187259|gb|EEI67326.1| ribonuclease HII [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 252 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 86/195 (44%), Positives = 120/195 (61%), Gaps = 5/195 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + VAG+DEVGRG LAGPVV AA+IL + + +NDSK+++ +R LY Sbjct: 58 RYERQLWGT-YEYVAGLDEVGRGPLAGPVVTAAVILPHHF-QWPVNDSKQLTAHERNVLY 115 Query: 73 EKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I + AI+ I A ++ ID+ NI+ AT A+ AV++L+V P L+D +P DLP Sbjct: 116 PHILTEAIVVGIGVADNRTIDRENIYHATELAMAQAVDHLRVAPECLLVDAMHVPVDLP- 174 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S+SIAAASI+AKV RDRLM + K YP Y F ++GY T H + Sbjct: 175 -QKRLIKGDANSISIAAASIVAKVIRDRLMMMYDKIYPGYDFKDNMGYGTKAHLAGLAAH 233 Query: 192 GPSCIHRLTFRPLRN 206 G + IHR +F P+R+ Sbjct: 234 GVTPIHRRSFGPVRD 248 >gi|78224061|ref|YP_385808.1| ribonuclease HII [Geobacter metallireducens GS-15] gi|97182538|sp|Q39RP1|RNH2_GEOMG RecName: Full=Ribonuclease HII; Short=RNase HII gi|78195316|gb|ABB33083.1| RNase HII [Geobacter metallireducens GS-15] Length = 213 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 96/207 (46%), Positives = 124/207 (59%), Gaps = 4/207 (1%) Query: 2 FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61 + I ER + E +V VAG+DE GRG LAGPVV AA+IL G++DSK Sbjct: 5 LFDDIGERSLWTFENLVSRNGFHAVAGVDEAGRGPLAGPVVAAAVILPQGAELPGVDDSK 64 Query: 62 KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K+S KRE L+ I+ A+ + + A H ID+ NI +ATL A+ AV L V P LI Sbjct: 65 KLSAPKREHLFGLISGCALAVGVGVADHACIDRINILQATLRAMAEAVGQLAVPPDYLLI 124 Query: 121 DGR-SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 DG +IP +LP + KGDS S+SIA+ASI+AKVTRDR+M +++P YGF H GY Sbjct: 125 DGISTIPLNLP--QKTIKKGDSSSISIASASIVAKVTRDRMMMEYDQQFPGYGFAEHKGY 182 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRN 206 A H I E GP IHR TFR ++ Sbjct: 183 GCASHLAAIAELGPCPIHRKTFRGVKE 209 >gi|325299103|ref|YP_004259020.1| Ribonuclease H [Bacteroides salanitronis DSM 18170] gi|324318656|gb|ADY36547.1| Ribonuclease H [Bacteroides salanitronis DSM 18170] Length = 200 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 101/179 (56%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL +NDSKK++ ++R +L I S A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPSGYQNELLNDSKKLTERQRYKLRNIIESDALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S ID+ NI A+ A++ AVE L V P+ LIDG V+KGD LS Sbjct: 73 VSPAEIDQINILNASFLAMHRAVEQLAVRPQHLLIDGNRFNPYPGIPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H +YP Y + + GYPT KH++ I+ G + HR++F L Sbjct: 133 IAAASILAKTYRDDYMNCLHDEYPLYDWKGNKGYPTRKHREAIRLYGTTPYHRMSFNLL 191 >gi|306821648|ref|ZP_07455246.1| ribonuclease HII [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550393|gb|EFM38386.1| ribonuclease HII [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 263 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 90/198 (45%), Positives = 120/198 (60%), Gaps = 4/198 (2%) Query: 12 FELEAMVRE-KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 +E E +RE +N + IDEVGRG LAGP+VV ++LD N ++DSKK+S KKR+E Sbjct: 67 YEYEKNIRESENKQNILCIDEVGRGPLAGPLVVCGVMLDENPEILYVDDSKKLSEKKRKE 126 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 ++E+I I I + ID+ NI AT A+ H +N V L+DG I +D+ Sbjct: 127 IFEQIMQKNIRYEIMTVEVDKIDELNIFNATYRAMSHIAKNFPVKIDHILVDGNQILKDV 186 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 AVIKGDS L IA ASIIAKVTRD +M K YP Y F S+ GY T+KH + IK Sbjct: 187 NIDQTAVIKGDSKVLGIAIASIIAKVTRDAMMIDYDKIYPMYDFASNKGYGTSKHIEGIK 246 Query: 190 EKGPSCIHRLTFRPLRNL 207 + G IHR++F L+N+ Sbjct: 247 KYGTCPIHRMSF--LKNI 262 >gi|295696077|ref|YP_003589315.1| Ribonuclease H [Bacillus tusciae DSM 2912] gi|295411679|gb|ADG06171.1| Ribonuclease H [Bacillus tusciae DSM 2912] Length = 240 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 85/203 (41%), Positives = 125/203 (61%), Gaps = 5/203 (2%) Query: 6 IPERP---HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62 IP RP + E K +AG+DE G G LAGPVV AA++L + G+ DSK+ Sbjct: 9 IPTRPPGLGWNWEQYWWTKGYSRIAGVDEAGVGPLAGPVVAAAVVLPKDFDVAGLGDSKR 68 Query: 63 ISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 ++ ++REE ++++ A+ ++ ID+ NI +A A+ AV L + L+D Sbjct: 69 LTARQREEQFKRLRRDAVALEVAVVDADLIDRLNILQAARLAMRRAVAALGERCEAVLVD 128 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 GR++P D+P + AV++GD+ S SIAAASI+AKVTRDRLM ++YP YGF+ H GYPT Sbjct: 129 GRTVP-DMPAPSLAVVRGDAQSPSIAAASIVAKVTRDRLMVEYGQRYPGYGFERHKGYPT 187 Query: 182 AKHQQVIKEKGPSCIHRLTFRPL 204 A H + ++ GP IHR +F P+ Sbjct: 188 AAHLEALERLGPCPIHRRSFGPV 210 >gi|167648321|ref|YP_001685984.1| ribonuclease HII [Caulobacter sp. K31] gi|189043575|sp|B0SZF7|RNH2_CAUSK RecName: Full=Ribonuclease HII; Short=RNase HII gi|167350751|gb|ABZ73486.1| Ribonuclease H [Caulobacter sp. K31] Length = 230 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 90/197 (45%), Positives = 118/197 (59%), Gaps = 5/197 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P LEA V G+DE GRG AGPV AA+ILDP+ +P G++DSKK+S K R Sbjct: 19 PDMMLEAAC---GPGLVCGVDEAGRGPWAGPVSAAAVILDPSRVPKGLDDSKKLSAKARA 75 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L +I A+ + AS + I++ NI A A+ A++ L V P AL+DG E Sbjct: 76 VLEIEIKQVAVAWCVGLASIEEIEELNILHAAGLAMCRAIDGLSVKPDIALVDGNYRFE- 134 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LPC VIKGDS+S SIAAASI+AK RDR+M +P YGF SH GY A H + + Sbjct: 135 LPCPIKTVIKGDSLSCSIAAASILAKEARDRIMVEMDALHPGYGFASHKGYHAAIHVEGL 194 Query: 189 KEKGPSCIHRLTFRPLR 205 + GPS IHRL++ P++ Sbjct: 195 RRLGPSPIHRLSWAPVK 211 >gi|149371924|ref|ZP_01891243.1| ribonuclease HII [unidentified eubacterium SCB49] gi|149355064|gb|EDM43625.1| ribonuclease HII [unidentified eubacterium SCB49] Length = 199 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 76/179 (42%), Positives = 101/179 (56%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRG L+GPV AA+IL N + DSK++SHKKR EL I +AI + Sbjct: 13 CGTDEAGRGCLSGPVTAAAVILPDNFSHPWLTDSKQLSHKKRMELKPIIEEAAISYGVCH 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 IDK NI A++ A++ +++ L P+ IDG VIKGD L Sbjct: 73 VMMDEIDKINILNASILAMHRSIDKLTTAPQFIAIDGNRFKPYAEIPYECVIKGDGKFLH 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M+ H+K+P Y + + GYPT +H+ I+E GPS HR +FR L Sbjct: 133 IAAASILAKTHRDLYMQELHEKFPMYNWQKNKGYPTKEHRAAIREHGPSPYHRKSFRLL 191 >gi|288925319|ref|ZP_06419253.1| ribonuclease HII [Prevotella buccae D17] gi|315606714|ref|ZP_07881724.1| ribonuclease HII [Prevotella buccae ATCC 33574] gi|288337790|gb|EFC76142.1| ribonuclease HII [Prevotella buccae D17] gi|315251569|gb|EFU31548.1| ribonuclease HII [Prevotella buccae ATCC 33574] Length = 201 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 106/179 (59%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK++SHK+R EL E+I A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPRDYNNPALNDSKQLSHKRRNELREQIMHDAVAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI KA+ A++ A++ L V P + ++DG A++KGD S Sbjct: 73 VTPEEIDRINILKASFLAMHRALDALNVRPEAVIVDGNRFVPYGDLPYTAIVKGDGKYQS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M ++YP Y ++ ++GYPT KH++ I+ G HR ++ L Sbjct: 133 IAAASILAKTFRDDYMCDLARRYPYYDWEHNMGYPTKKHREGIRLHGICPYHRKSYNLL 191 >gi|116494884|ref|YP_806618.1| ribonuclease HII [Lactobacillus casei ATCC 334] gi|301066445|ref|YP_003788468.1| ribonuclease HII [Lactobacillus casei str. Zhang] gi|122263698|sp|Q039E6|RNH2_LACC3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|116105034|gb|ABJ70176.1| RNase HII [Lactobacillus casei ATCC 334] gi|300438852|gb|ADK18618.1| Ribonuclease HII [Lactobacillus casei str. Zhang] Length = 252 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 86/195 (44%), Positives = 120/195 (61%), Gaps = 5/195 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + VAG+DEVGRG LAGPVV AA+IL + + +NDSK+++ +R LY Sbjct: 58 RYERQLWGT-YEYVAGLDEVGRGPLAGPVVTAAVILPHHF-QWPVNDSKQLTAHERNVLY 115 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I + AI + I A ++ ID+ NI+ AT A+ AV++L+V P L+D +P DLP Sbjct: 116 PHILTEAIAVGIGVADNRTIDRENIYHATELAMAQAVDHLRVAPECLLVDAMHVPVDLP- 174 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S+SIAAASI+AKV RDRLM + K YP Y F ++GY T H + Sbjct: 175 -QKRLIKGDANSISIAAASIVAKVIRDRLMMMYDKIYPGYDFKDNMGYGTKAHLAGLAAH 233 Query: 192 GPSCIHRLTFRPLRN 206 G + IHR +F P+R+ Sbjct: 234 GVTPIHRRSFGPVRD 248 >gi|239636276|ref|ZP_04677278.1| putative ribonuclease HII [Staphylococcus warneri L37603] gi|239597631|gb|EEQ80126.1| putative ribonuclease HII [Staphylococcus warneri L37603] Length = 256 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 77/191 (40%), Positives = 116/191 (60%), Gaps = 3/191 (1%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77 + + N + GIDEVGRG LAGPVV A+IL+P + G+NDSKK+S K R L +++ Sbjct: 66 LAQNNKAIICGIDEVGRGPLAGPVVTCAVILNPGHRYLGLNDSKKVSAKNRVILNQQLKE 125 Query: 78 -SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 + A+ ID+ NI++AT A+ A++ L + P LID ++ ++ ++ Sbjct: 126 GVTDYAYGIATSAEIDEMNIYQATRLAMQRAIDQLNIRPTQLLIDAMTLDNEIS--QTSI 183 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD+ S+SIAAASI+AK RD M+ K+YP Y F+ +VGY T H + I + G Sbjct: 184 IKGDAKSVSIAAASIMAKEYRDHYMKELAKQYPGYDFEKNVGYGTKAHLEGIAQNGVISE 243 Query: 197 HRLTFRPLRNL 207 HR TF P++++ Sbjct: 244 HRKTFEPIKSI 254 >gi|255657930|ref|ZP_05403339.1| ribonuclease HII [Mitsuokella multacida DSM 20544] gi|260850123|gb|EEX70130.1| ribonuclease HII [Mitsuokella multacida DSM 20544] Length = 259 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 92/198 (46%), Positives = 130/198 (65%), Gaps = 2/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + VAG+DE GRG LAGPV VAA+IL + +NDSKK+S K REEL Sbjct: 58 YAYEHAAWARGHEIVAGVDEAGRGPLAGPVSVAAVILPHDLCLPKLNDSKKLSAKVREEL 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +++I AI + + Q ID+ NI++AT++ +Y A+ +LQ P+ LID + + LP Sbjct: 118 FDEIQEKAIAVGTALIDAQTIDRVNIYQATINGMYEAIFSLQPAPQEVLIDAVPL-DRLP 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + ++IKGD+ S SI+AASIIAKVTRDRLM K YP+YGF H GY TA+H + +K+ Sbjct: 177 MPSESIIKGDAKSASISAASIIAKVTRDRLMDEYDKIYPEYGFAQHKGYGTAQHIEALKK 236 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP IHR +F P+R+++ Sbjct: 237 YGPCPIHRRSFEPVRSIA 254 >gi|88801501|ref|ZP_01117029.1| ribonuclease HII [Polaribacter irgensii 23-P] gi|88782159|gb|EAR13336.1| ribonuclease HII [Polaribacter irgensii 23-P] Length = 196 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 70/188 (37%), Positives = 106/188 (56%), Gaps = 1/188 (0%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77 + AG DE GRG L GPVV AA+IL + +NDSK +S KKRE + I Sbjct: 4 LNYSGFSLEAGTDEAGRGCLCGPVVAAAVILSKDFTHPFLNDSKLLSEKKREAVRPFIEE 63 Query: 78 SAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 +A+ S+S Q +D+ N+ +A+++ ++ A+ L++ P ++DG + + Sbjct: 64 NALAFSVSFIWQQEVDEINVLQASIEGMHRAIAGLKITPEFIIVDGNKFRDYKEIPHQTI 123 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 +KGDS LSIAAAS++AK RD M H ++P Y + + GYPT +H+ I+ G + Sbjct: 124 VKGDSKYLSIAAASVLAKTYRDDYMAKIHLEFPMYNWAKNKGYPTKEHRNAIRNFGATEY 183 Query: 197 HRLTFRPL 204 HR TFR L Sbjct: 184 HRKTFRLL 191 >gi|15827847|ref|NP_302110.1| ribonuclease HII [Mycobacterium leprae TN] gi|221230324|ref|YP_002503740.1| ribonuclease HII [Mycobacterium leprae Br4923] gi|7227915|sp|O33022|RNH2_MYCLE RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807982|sp|B8ZRW3|RNH2_MYCLB RecName: Full=Ribonuclease HII; Short=RNase HII gi|2251163|emb|CAB10634.1| ribonuclease HII [Mycobacterium leprae] gi|13093399|emb|CAC30562.1| ribonuclease HII [Mycobacterium leprae] gi|219933431|emb|CAR71706.1| ribonuclease HII [Mycobacterium leprae Br4923] Length = 240 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 79/200 (39%), Positives = 113/200 (56%), Gaps = 2/200 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 R + LE ++ + PVAG+DEVGRGA AGP+VVAA +L P + ++DSKK+S K R Sbjct: 18 RGMWTLEYELQRSGLGPVAGVDEVGRGACAGPLVVAACVLGPGRLEESLDDSKKLSAKGR 77 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E L+ I A+ + +D+H + A ++ + AV L V P L DG +P Sbjct: 78 EMLFPLICRYALAYHVVFIPSVEVDRHGVQVANIEGMRRAVAGLSVRPGYVLSDGFRVP- 136 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L + V+ GD++ IAAAS++AKV+RDRLM YP YGF +H GY T H Sbjct: 137 GLSVPSLPVVGGDAVVACIAAASVLAKVSRDRLMVAMDADYPGYGFAAHKGYCTRAHSLA 196 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 + + GP HR +F +R + Sbjct: 197 LTQLGPCPEHRYSFINVRRI 216 >gi|225870570|ref|YP_002746517.1| ribonuclease HII [Streptococcus equi subsp. equi 4047] gi|225699974|emb|CAW93945.1| ribonuclease HII [Streptococcus equi subsp. equi 4047] Length = 257 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 84/202 (41%), Positives = 120/202 (59%), Gaps = 6/202 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +K +AGIDEVGRG LAGPVV A +IL G+NDSKKI K E + Sbjct: 57 LTYEQALYQKGFQAIAGIDEVGRGPLAGPVVAACVILPKGCTIKGLNDSKKIPKAKHEAI 116 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIPE 127 Y+ I A+ I + + ID+ NI++AT A+ A+ L+ P LID ++ Sbjct: 117 YQAIQKKALGIGLGIIDNHTIDRVNIYEATKLAMTAAINQLEGSVSKPDYLLIDAMTL-- 174 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 ++ A+IKGD+ S+SIAAASI+AKVTRDRLM K +P YGF + GY T +H Q Sbjct: 175 EVSIPQQAIIKGDASSMSIAAASIVAKVTRDRLMLDYDKAFPGYGFAKNAGYGTKEHLQG 234 Query: 188 IKEKGPSCIHRLTFRPLRNLSV 209 + + G + IHR +F P++++ + Sbjct: 235 LHQYGVTPIHRQSFEPIKSMIL 256 >gi|89890457|ref|ZP_01201967.1| ribonuclease HII, RNase HII [Flavobacteria bacterium BBFL7] gi|89517372|gb|EAS20029.1| ribonuclease HII, RNase HII [Flavobacteria bacterium BBFL7] Length = 199 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 105/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRG L GPV AA+IL P+ ++DSKK+S K+R +L I AI +S Sbjct: 13 CGTDEAGRGCLCGPVTAAAVILPPDFKSDLLDDSKKLSRKRRYQLRSLIEEHAISYHVSH 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + ID+ NI A++ A++ A++ L++ P +DG QA VIKGD L Sbjct: 73 VMMETIDEINILNASILAMHQAIDGLKINPEHIAVDGNRFKPYADIQATTVIKGDGKYLH 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M +++P+Y + + GYPT KH++ IK+ G + HR+TF+ L Sbjct: 133 IAAASILAKTYRDDYMEKIAREHPEYDWHKNQGYPTKKHREAIKKYGTTPYHRMTFKLL 191 >gi|119774290|ref|YP_927030.1| ribonuclease HII [Shewanella amazonensis SB2B] gi|189043657|sp|A1S4Q4|RNH2_SHEAM RecName: Full=Ribonuclease HII; Short=RNase HII gi|119766790|gb|ABL99360.1| Ribonuclease H [Shewanella amazonensis SB2B] Length = 206 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 91/184 (49%), Positives = 116/184 (63%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG L G VV AA+ILDPN G+NDSKK++ KKR+ LY +I A+ +S Sbjct: 18 GRVAGVDEVGRGPLVGDVVTAAVILDPNKPIAGLNDSKKLTEKKRDALYLEIMDKALAVS 77 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + AS ID+ NI AT+ A+ AV L ++P S L+DG P D A AV+KGD + Sbjct: 78 VGRASPTEIDELNILHATMLAMQRAVAGLTIVPESVLVDGNRTP-DFGVPAHAVVKGDGL 136 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AAS+IAKVTRDR M +YP YGF H GYPT H + I G HR +FR Sbjct: 137 IAAISAASVIAKVTRDREMGELDARYPQYGFAGHKGYPTKAHFEAISAHGVLAEHRRSFR 196 Query: 203 PLRN 206 P+R Sbjct: 197 PVRE 200 >gi|332967913|gb|EGK07003.1| ribonuclease HII [Kingella kingae ATCC 23330] Length = 219 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 78/184 (42%), Positives = 110/184 (59%), Gaps = 1/184 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA++L + G+ DSKK+S KKR+ L +I AI S+++ Sbjct: 30 AGVDEAGRGCLVGSVFAAAVMLPTDYALHGLTDSKKLSEKKRDALAVEIKQQAIAWSVAA 89 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS I ++NI +ATL A+ A+ L P IDG +P++L A AV++GDS + Sbjct: 90 ASPAEIAQYNILQATLLAMTRAIAGLAKQPAFVWIDGNCVPKNLTMPAQAVVQGDSKIAT 149 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AK RD M H++YP YGF H GY TA H +++ G HR F P++ Sbjct: 150 ISAASILAKTARDAEMYALHERYPQYGFAQHKGYGTAAHLAALQQFGALAEHRADFAPVK 209 Query: 206 NLSV 209 + V Sbjct: 210 AVLV 213 >gi|260887868|ref|ZP_05899131.1| ribonuclease HII [Selenomonas sputigena ATCC 35185] gi|330838733|ref|YP_004413313.1| Ribonuclease H [Selenomonas sputigena ATCC 35185] gi|260862374|gb|EEX76874.1| ribonuclease HII [Selenomonas sputigena ATCC 35185] gi|329746497|gb|AEB99853.1| Ribonuclease H [Selenomonas sputigena ATCC 35185] Length = 255 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 91/198 (45%), Positives = 129/198 (65%), Gaps = 3/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + REK VAG+DE GRG LAGPVVVAA+IL +NDSKK+S RE+L Sbjct: 57 YHYEFLAREKGCTLVAGVDEAGRGPLAGPVVVAAVILPLGFFLPHLNDSKKLSAAMREKL 116 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + IT A+ + I S S + ID+ NI++AT + V +L+ P+ L+D +P LP Sbjct: 117 FSAITEGAVAVEIVSISEKIIDEKNIYQATKQGMCEVVASLRPQPQHVLLDA--VPLKLP 174 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +F+++ GD+ S SIAAASI+AKVTRDRLM ++YP YGF H GY TA+H + +++ Sbjct: 175 MTSFSIVHGDAKSASIAAASIMAKVTRDRLMLKYDEEYPQYGFKKHKGYGTAEHLEALQK 234 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP IHR +F P+R+++ Sbjct: 235 YGPCPIHRRSFEPIRSMA 252 >gi|83749784|ref|ZP_00946758.1| Ribonuclease HII [Ralstonia solanacearum UW551] gi|207743230|ref|YP_002259622.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum IPO1609] gi|83723541|gb|EAP70745.1| Ribonuclease HII [Ralstonia solanacearum UW551] gi|206594627|emb|CAQ61554.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum IPO1609] Length = 236 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 76/194 (39%), Positives = 116/194 (59%), Gaps = 5/194 (2%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 V ++ + G+DE GRG LAGPV A++L+P G+ DSK ++ KKRE LY++I Sbjct: 20 AVGKRARRILCGVDEAGRGPLAGPVTAGAVVLNPRKPIKGLADSKVLTAKKREALYDEIV 79 Query: 77 SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLPCQ 132 A+ ++ A+ + ID+ NI AT+ A+ AV+ + V+P +DG P+ + Sbjct: 80 EKALAWHVAEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVDGNRCPQ-VAFA 138 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A++KGD++ +I+AASI+AKVTRDR + H +P YGFD H GY T +H I+ G Sbjct: 139 VEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAGYGTPQHLAAIERHG 198 Query: 193 PSCIHRLTFRPLRN 206 + HR +F P+R Sbjct: 199 VTPHHRRSFAPVRR 212 >gi|71082816|ref|YP_265535.1| ribonuclease HII (RNase HII) [Candidatus Pelagibacter ubique HTCC1062] gi|97189139|sp|Q4FPF7|RNH2_PELUB RecName: Full=Ribonuclease HII; Short=RNase HII gi|71061929|gb|AAZ20932.1| Ribonuclease HII (RNase HII) [Candidatus Pelagibacter ubique HTCC1062] Length = 186 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 79/185 (42%), Positives = 118/185 (63%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M +AG+DEVGRG+L GPV AA+IL+ + + DSK ++ KREEL + I ++I + Sbjct: 1 MKILAGVDEVGRGSLIGPVYAAAVILNNSIDKKLLKDSKTLTKDKREELEKYIKKNSIWA 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I AS + I+K NI A+L A+ A+ L++ P LIDG +P+ + VIKGD Sbjct: 61 IGQASTKEIEKINILHASLLAMKRAILKLKIKPSLVLIDGNKLPDLKNYKLEYVIKGDQK 120 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SI+AASIIAKV+RD+ + K++ +YG+D++ GY T +H + IK+ G + HR TF Sbjct: 121 IPSISAASIIAKVSRDKFITKLSKEFNNYGWDTNSGYGTKEHLKAIKQFGITKYHRKTFS 180 Query: 203 PLRNL 207 P+ +L Sbjct: 181 PISDL 185 >gi|315225093|ref|ZP_07866910.1| ribonuclease HII [Capnocytophaga ochracea F0287] gi|314944776|gb|EFS96808.1| ribonuclease HII [Capnocytophaga ochracea F0287] Length = 198 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 3/186 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL + + DSK+++ K+R L I A+ ++ Sbjct: 12 AGTDEAGRGCLAGPVTAAAVILPSDFKNDLLTDSKQLTEKQRNLLRPIIEREAVAYAVCH 71 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ID+ NI +A++ A++ A+ L++ P +DG V+KGD + Sbjct: 72 VLPAEIDELNILRASITAMHRAIAQLKITPDFIAVDGNKFVPYQKIPYACVVKGDGKIQT 131 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR--P 203 IAAASI+AK RD M +++P+Y + + GYPT +H++ I E G + HR TF+ P Sbjct: 132 IAAASILAKTYRDAYMEDLAQQFPEYHWQQNKGYPTPEHRKAIAEYGATKHHRKTFQLLP 191 Query: 204 LRNLSV 209 + LS+ Sbjct: 192 VEQLSL 197 >gi|289548139|ref|YP_003473127.1| ribonuclease H [Thermocrinis albus DSM 14484] gi|289181756|gb|ADC89000.1| Ribonuclease H [Thermocrinis albus DSM 14484] Length = 203 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 82/195 (42%), Positives = 111/195 (56%), Gaps = 5/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E EK + VAG+DE GRG LAGP+V A+IL P PF DSKK+S +REE Y Sbjct: 5 YELPFWEKGL-LVAGVDEAGRGPLAGPLVACAVILPPYTEPFLKGDSKKLSPSEREEAYR 63 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I A+ I + + ID+ NI +AT A+ A+E+L+ + D + D Sbjct: 64 IIKERALSIGTAVVDSEVIDRINILQATRLAMKRALEDLKHPYDVVITDWVKLDVD---N 120 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A+ KGD SL A AS++AKV RD++M H+ YP Y F SH GYPT +H Q + + Sbjct: 121 CIAIPKGDERSLCCACASVVAKVLRDKIMEHYHRLYPQYDFASHKGYPTKEHLQRLLQYR 180 Query: 193 PSCIHRLTFRPLRNL 207 S IHR +FRP++ L Sbjct: 181 ESPIHRKSFRPVKAL 195 >gi|237737692|ref|ZP_04568173.1| ribonuclease HII [Fusobacterium mortiferum ATCC 9817] gi|229419572|gb|EEO34619.1| ribonuclease HII [Fusobacterium mortiferum ATCC 9817] Length = 206 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 84/194 (43%), Positives = 112/194 (57%), Gaps = 10/194 (5%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREE 70 F+LE + G+DE GRG LAG VV AA+ L + INDSKK++ KKRE+ Sbjct: 9 FDLEK------GKEIIGVDEAGRGPLAGSVVAAAVKLKRYSEELQEINDSKKLTEKKREK 62 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI---PRSALIDGRSIPE 127 L++ I + + I AS Q ID+ NI AT A+ A+E L L+DG Sbjct: 63 LFDIIMENFEVGIGIASVQEIDELNILNATFLAMRRAIEELDKKTNTDVLVLVDGNFKIR 122 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + + +IKGD+ SLSIAAASIIAKVTRDR + KKYP+Y F+ H GY T H++ Sbjct: 123 EYIGKQEPIIKGDAKSLSIAAASIIAKVTRDRQLVEEGKKYPEYHFEKHKGYGTKAHREA 182 Query: 188 IKEKGPSCIHRLTF 201 + + G + IHR TF Sbjct: 183 LLQYGVTPIHRKTF 196 >gi|325856482|ref|ZP_08172171.1| ribonuclease HII [Prevotella denticola CRIS 18C-A] gi|325483451|gb|EGC86424.1| ribonuclease HII [Prevotella denticola CRIS 18C-A] Length = 200 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 103/179 (57%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG L G V AA+IL P ++DSKK++ +KR L + I A+ ++ Sbjct: 13 AGCDEAGRGCLVGSVYAAAVILPPGYQNSLLDDSKKLTARKRYALRDTIEHDAVAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI A+ A++ A++ L+V P + ++DG +IKGD LS Sbjct: 73 VTPEEIDRINILNASFLAMHRALDQLKVRPEAVIVDGNRFTPYRKLPFATIIKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M ++YP Y + ++GYPT KH+Q I+E G + HR ++ L Sbjct: 133 IAAASILAKTYRDDYMCSLAEEYPQYDWQKNMGYPTKKHRQAIREYGITPYHRRSYNLL 191 >gi|319937633|ref|ZP_08012037.1| ribonuclease [Coprobacillus sp. 29_1] gi|319807275|gb|EFW03887.1| ribonuclease [Coprobacillus sp. 29_1] Length = 210 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 77/195 (39%), Positives = 116/195 (59%), Gaps = 3/195 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 E + G+DE GRG +AGP+VVA +I + INDSK++S KKRE Sbjct: 4 RLRYEKAAYALGKSYIIGLDEAGRGPMAGPLVVAGVIFEKGYYHEAINDSKQLSEKKRES 63 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY+ I A+ I + +D+ N+++A+ + A+ ++ + P AL D P Sbjct: 64 LYDLIIRDALAYQIEIIDVEDVDRLNVYQASKKGMIDAIHHIAIQPDFALSDAM--PLGD 121 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A+IKGDS+S+SI AASI+AKVTRDR+M+ +YP+YGF H GYPT +H++++K Sbjct: 122 EIAHNAIIKGDSLSMSIGAASILAKVTRDRIMKKYDLQYPEYGFAQHKGYPTKQHKELLK 181 Query: 190 EKGPSCIHRLTFRPL 204 G + IHR +F+P+ Sbjct: 182 MYGVTPIHRRSFQPV 196 >gi|169350423|ref|ZP_02867361.1| hypothetical protein CLOSPI_01191 [Clostridium spiroforme DSM 1552] gi|169292743|gb|EDS74876.1| hypothetical protein CLOSPI_01191 [Clostridium spiroforme DSM 1552] Length = 206 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 80/197 (40%), Positives = 112/197 (56%), Gaps = 4/197 (2%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +E E + G+DE GRG +AG +VVA +I INDSK++S+KKR Sbjct: 1 MKRYEYENKYYNLGYDYIIGLDEAGRGPMAGELVVAGVIFPKGYYDERINDSKQLSNKKR 60 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 EELY I +A+ I S + +DK N+++A+ A+ + NL AL D + Sbjct: 61 EELYGLIVENALAYDIEIVSVEDVDKLNVYQASKQAMEKCISNLMRDKMFALSDAMPLSY 120 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 A+IKGD+ S+SI AASI+AKVTRD LM K YP+YGFD H GY T H++ Sbjct: 121 ---FNHEAIIKGDAKSISIGAASILAKVTRDHLMEEYAKIYPEYGFDKHKGYVTKMHKEA 177 Query: 188 IKEKGPSCIHRLTFRPL 204 +++ GP IHR +F P+ Sbjct: 178 LEKYGPCPIHRKSFAPV 194 >gi|207723368|ref|YP_002253767.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum MolK2] gi|206588567|emb|CAQ35530.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum MolK2] Length = 236 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 75/194 (38%), Positives = 115/194 (59%), Gaps = 5/194 (2%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 ++ + G+DE GRG LAGPV A++L+P G+ DSK ++ KKRE LY++I Sbjct: 20 AAGKRARRILCGVDEAGRGPLAGPVTAGAVVLNPRKPIKGLADSKVLTAKKREALYDEIV 79 Query: 77 SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLPCQ 132 A+ ++ A+ + ID+ NI AT+ A+ AV+ + V+P +DG P+ + Sbjct: 80 EKALAWHVAEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVDGNRCPQ-VAFA 138 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A++KGD++ +I+AASI+AKVTRDR + H +P YGFD H GY T +H I+ G Sbjct: 139 VEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAGYGTPQHLAAIERHG 198 Query: 193 PSCIHRLTFRPLRN 206 + HR +F P+R Sbjct: 199 VTPHHRRSFAPVRR 212 >gi|163785164|ref|ZP_02179855.1| RNase HII [Hydrogenivirga sp. 128-5-R1-1] gi|159879566|gb|EDP73379.1| RNase HII [Hydrogenivirga sp. 128-5-R1-1] Length = 190 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 82/192 (42%), Positives = 109/192 (56%), Gaps = 5/192 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE+E + +K + GIDE GRG LAGPVV AA+I N F DSKK+S KKRE L Sbjct: 2 FEIEKSLYQKGFKKIVGIDEAGRGPLAGPVVSAAVIFPSNIDIFITKDSKKLSPKKREIL 61 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +E+I A+ + I IDK NI+ AT A+ A+ L+ + D P Sbjct: 62 FEEIKKKALAVGIGVVDSCEIDKVNIYNATKLAMKRALFTLKSDFDYIITDYVKFD---P 118 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +V K D S+S+AAASIIAKV RD++M + YP FD H GYPT H++ IK+ Sbjct: 119 YPHISVKKADEKSISVAAASIIAKVYRDKIMEYFSEIYPH-SFDKHKGYPTKLHKEEIKK 177 Query: 191 KGPSCIHRLTFR 202 G + IHR +F+ Sbjct: 178 FGITPIHRKSFK 189 >gi|163786300|ref|ZP_02180748.1| ribonuclease HII [Flavobacteriales bacterium ALC-1] gi|159878160|gb|EDP72216.1| ribonuclease HII [Flavobacteriales bacterium ALC-1] Length = 200 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 104/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRG LAGPV AA+IL + +NDSK++S K R L I + A+ ++ Sbjct: 14 CGTDEAGRGCLAGPVTAAAVILPQSFNNKKLNDSKQLSEKNRNLLKPIIETEALSFAVHH 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ID NI A++ A++H+++ L++ P ++DG Q +IKGDS LS Sbjct: 74 IFESEIDTINILNASIKAMHHSIDKLKITPNYIIVDGNKFKPYRDIQHKTIIKGDSKYLS 133 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M+ H+++P Y + + GYPT +H+ IKE G + HR +FR L Sbjct: 134 IAAASILAKTYRDEYMKKIHEEFPMYNWKQNKGYPTKEHRAAIKEFGITKYHRKSFRLL 192 >gi|330997790|ref|ZP_08321625.1| ribonuclease HII [Paraprevotella xylaniphila YIT 11841] gi|329569678|gb|EGG51443.1| ribonuclease HII [Paraprevotella xylaniphila YIT 11841] Length = 207 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 104/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG LAG V AA+IL + +NDSK++S KKR L +I A+ ++ Sbjct: 13 AGLDEAGRGCLAGAVYAAAVILPKDYRNEMLNDSKQLSEKKRYLLRGQIERDALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + Q ID+ NI A+ A++ A++ L V P + L+DG V+KGD +S Sbjct: 73 VTPQEIDEINILNASFLAMHRALDQLAVRPEALLVDGNRFKPYRDLPHTTVVKGDGKYMS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H++YP Y +DS+ GYP H++ I+ G + HR+++ L Sbjct: 133 IAAASILAKTYRDDYMLRLHEEYPVYHWDSNKGYPAKAHREAIRRHGVTPYHRMSYNLL 191 >gi|254179336|ref|ZP_04885935.1| ribonuclease HII [Burkholderia pseudomallei 1655] gi|184209876|gb|EDU06919.1| ribonuclease HII [Burkholderia pseudomallei 1655] Length = 214 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 88/183 (48%), Positives = 124/183 (67%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 V G+DE GRG LAGPVV AA++LDP G++DSK +S KKRE L+++I + A+ S+ Sbjct: 27 IVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAHALAYSV 86 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS + ID NI AT+ A+ AVE L V+P A IDG P L ++ A++ GD++ Sbjct: 87 ASASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM-LAIRSEAIVGGDALV 145 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+++P YGFD+H GY T +H ++E GP HR +F P Sbjct: 146 PSISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAP 205 Query: 204 LRN 206 +R Sbjct: 206 VRE 208 >gi|302038368|ref|YP_003798690.1| ribonuclease HII [Candidatus Nitrospira defluvii] gi|300606432|emb|CBK42765.1| Ribonuclease HII [Candidatus Nitrospira defluvii] Length = 224 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 87/201 (43%), Positives = 119/201 (59%), Gaps = 2/201 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P E E R + +AG+DE GRG LAGPVV AA++L G+NDSK++ R Sbjct: 12 PTEEFEVEARCRGYRHIAGLDEAGRGPLAGPVVAAAVVLPRRCSLPGLNDSKQVGESDRV 71 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L+ +I A + I +A+ ID+ NI AT A+ A+E L + P L+D ++ Sbjct: 72 RLFVEIVRRATGVGIGAATEAEIDQLNILHATRLAMRRALEALPLQPDFLLLDAVTL-SG 130 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L ++IKGD +S SIAAASIIAKVTRDRLM H+ YP Y F H GY T +H +++ Sbjct: 131 LSIPQRSIIKGDGLSCSIAAASIIAKVTRDRLMVEYHRWYPQYNFAEHKGYGTPEHLRLL 190 Query: 189 KEKGPSCIHRLTFRPLRNLSV 209 +E GP IHR +F P++ L V Sbjct: 191 REHGPCAIHRRSFAPVQQLCV 211 >gi|197104042|ref|YP_002129419.1| ribonuclease HII [Phenylobacterium zucineum HLK1] gi|196477462|gb|ACG76990.1| ribonuclease HII [Phenylobacterium zucineum HLK1] Length = 230 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 91/199 (45%), Positives = 113/199 (56%), Gaps = 7/199 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKK 67 P LE PV G+DE GRG AGPV A+ILD P +P G++DSKK+S K Sbjct: 13 PTLLLEKAFVG---GPVCGVDEAGRGPWAGPVCAGAVILDSNPRKVPKGLDDSKKLSAKA 69 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE L E+I A+ + AS I NI AT A+ A+E + V P AL+DG Sbjct: 70 REALEEEIKEKAVAWGVGFASVSEIASLNILHATGLAMCRAIEAMAVQPAFALVDGN-YR 128 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 DLPC+ V+ GD+ S SIAAASI+AKV RDRLM YP YGF SH GY H + Sbjct: 129 FDLPCEVTTVVGGDAKSKSIAAASILAKVARDRLMVEMDALYPGYGFASHKGYNAPSHVE 188 Query: 187 VIKEKGPSCIHRLTFRPLR 205 + GP IHRL +RP++ Sbjct: 189 ALVSLGPCEIHRLAWRPVK 207 >gi|225009987|ref|ZP_03700459.1| Ribonuclease H [Flavobacteria bacterium MS024-3C] gi|225005466|gb|EEG43416.1| Ribonuclease H [Flavobacteria bacterium MS024-3C] Length = 193 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 71/184 (38%), Positives = 107/184 (58%), Gaps = 1/184 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG DE GRG L+GPV AA+IL N ++DSKK+S K+R L I A+ + Sbjct: 10 LIAGTDEAGRGCLSGPVTAAAVILPKNFYHPMLDDSKKLSAKQRAILAPIIKQEAVSYGV 69 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 S ID+ NI +A++ A++ ++ L+ IP ++DG L V+KGD Sbjct: 70 SHVFPHVIDRINILQASILAMHKSIAKLKTIPEKIIVDGNKFNPYLSIPHETVVKGDGKF 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAAS++AK RD M H+K+P Y ++ ++GYPTAKH+ I G + HR TF+ Sbjct: 130 YAIAAASVLAKTARDEYMMELHQKFPLYQWNKNMGYPTAKHRNAIATYGITPHHRKTFKG 189 Query: 204 LRNL 207 +++L Sbjct: 190 VKDL 193 >gi|42560965|ref|NP_975416.1| ribonuclease H II [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|81829391|sp|Q6MTH8|RNH2_MYCMS RecName: Full=Ribonuclease HII; Short=RNase HII gi|42492462|emb|CAE77058.1| ribonuclease H II [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321294|gb|ADK69937.1| ribonuclease HII [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 207 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 76/189 (40%), Positives = 115/189 (60%), Gaps = 1/189 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 N+ ++G DE GRG LAGP+VVA++IL P+ I DSKK++ K R+ LY++I + + Sbjct: 15 HNITYLSGSDEAGRGCLAGPLVVASVILKPDYFNPLIKDSKKLNPKTRQVLYDEIIKNCL 74 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 I S + +D+ N +A+L + NL++ P ALIDG E + +IKG Sbjct: 75 DYQIIIISSKQVDELNPLQASLLGFKTTINNLKITPDLALIDGNQNIELTNIKTLQIIKG 134 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D S SIA +SI+AKVTRD+++ + YP+Y F SH GY T KH I++ G IHR Sbjct: 135 DDKSFSIACSSILAKVTRDKILDEYDQIYPNYDFKSHKGYCTKKHLLAIQKYGILDIHRK 194 Query: 200 TFRPLRNLS 208 +++P++ +S Sbjct: 195 SYKPIKKIS 203 >gi|330685675|gb|EGG97316.1| ribonuclease HII [Staphylococcus epidermidis VCU121] Length = 256 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 79/196 (40%), Positives = 119/196 (60%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMW-PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + +N + GIDEVGRG LAGPVV A+IL+P + G+NDSKK+S K R L Sbjct: 61 YENDILAQNSKAFICGIDEVGRGPLAGPVVACAVILNPGHRYLGLNDSKKVSAKNRAVLN 120 Query: 73 EKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +++ + A+ ID+ NI++AT A+ A++ L+V P LID ++ ++ Sbjct: 121 QQLIDGVTDYAYGIATSAEIDEMNIYQATRLAMQRAIDQLKVQPTHLLIDAMTLDNEI-- 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASI+AK RD M+ K+YP Y F+++VGY T H + I + Sbjct: 179 NQTSIIKGDAKSVSIAAASIMAKEYRDNYMKDIAKQYPGYDFENNVGYGTKAHLEGIAQN 238 Query: 192 GPSCIHRLTFRPLRNL 207 G HR TF P++++ Sbjct: 239 GVISEHRKTFEPIKSI 254 >gi|311105997|ref|YP_003978850.1| ribonuclease HII [Achromobacter xylosoxidans A8] gi|310760686|gb|ADP16135.1| ribonuclease HII [Achromobacter xylosoxidans A8] Length = 202 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 81/191 (42%), Positives = 113/191 (59%), Gaps = 2/191 (1%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 E+ AG+DE GRG LAG V AA+IL+P G+ DSK + RE L +I + Sbjct: 11 EQPAMVTAGVDEAGRGPLAGAVYAAAVILNPARPIAGLADSKVLKAATREALALEIQEFS 70 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + I+SAS ID NI +AT+ A+ AV+ L +P+ AL+DG P+ L C VIK Sbjct: 71 LAWCIASASVAEIDSMNILRATMLAMQRAVQGLSTMPQLALVDGNQAPK-LGCTVQTVIK 129 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD++ +I+AASI+AK RD + H YP Y FD H GY TA H ++++E GP HR Sbjct: 130 GDALVPAISAASILAKTARDADLLRLHALYPQYAFDQHKGYGTALHLEMLREHGPCAEHR 189 Query: 199 LTFRPLRNLSV 209 +F P++ S+ Sbjct: 190 RSFAPIKAFSL 200 >gi|119510873|ref|ZP_01629997.1| Ribonuclease HII/HIII [Nodularia spumigena CCY9414] gi|119464482|gb|EAW45395.1| Ribonuclease HII/HIII [Nodularia spumigena CCY9414] Length = 244 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 85/187 (45%), Positives = 113/187 (60%), Gaps = 5/187 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 VAGIDEVGRGAL GPVV AA+IL +P I DSKK+S +R +L ++I A Sbjct: 55 GLVAGIDEVGRGALFGPVVAAAVILPACALPKLMAAEIKDSKKLSSSRRTQLSQQICDLA 114 Query: 80 -IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 +I AS ID+ NI +ATL A+ AV L+V P+ L+DG +DL ++K Sbjct: 115 TDWNIGFASSAEIDQINILQATLLAMRRAVLKLKVQPQLCLVDGNQPIKDLLIPQETIVK 174 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD SL+IAAASI+AKV RD L+ KYP Y + GY + KH +++ GPS +HR Sbjct: 175 GDERSLTIAAASIVAKVWRDELVMRLALKYPLYNLKDNKGYGSQKHLVALQKYGPSRLHR 234 Query: 199 LTFRPLR 205 +FRP + Sbjct: 235 KSFRPCQ 241 >gi|313633474|gb|EFS00298.1| ribonuclease HII [Listeria seeligeri FSL N1-067] Length = 261 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 89/195 (45%), Positives = 118/195 (60%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + ++ +AG+DEVGRG LAGPVV AA+IL N GINDSK++S KRE L+ Sbjct: 60 QYENDLYQQGYKFIAGVDEVGRGPLAGPVVAAAVILPENFSVVGINDSKQLSELKRETLF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I AI + + H ID+ NI++AT A+ A++ L P LID P Sbjct: 120 ELIKQQAIAVGVGIVEHDVIDEVNIYEATKLAMRMALDELNPSPDFILIDAM--PLKYTE 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM+ YP Y F S++GY T KH + Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRLMKDYDVAYPGYDFASNMGYGTKKHLIGLDTI 237 Query: 192 GPSCIHRLTFRPLRN 206 G IHRL+F P++ Sbjct: 238 GVCPIHRLSFAPVKE 252 >gi|186684020|ref|YP_001867216.1| ribonuclease HII [Nostoc punctiforme PCC 73102] gi|186466472|gb|ACC82273.1| ribonuclease HII/HIII [Nostoc punctiforme PCC 73102] Length = 218 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 85/187 (45%), Positives = 115/187 (61%), Gaps = 5/187 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 VAG+DEVGRGAL GPVV AA+IL + +P I DSKK+S +R +L ++I + A Sbjct: 25 GLVAGVDEVGRGALFGPVVAAAVILPDHALPILIAAKIKDSKKLSSSRRTQLAQQICALA 84 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 I I AS IDK NI +ATL A+ AV L+V P L+DG +DL +IK Sbjct: 85 IDWKIGFASTAEIDKINILQATLLAMKRAVLKLKVQPAICLVDGNQSIKDLLLPQQTIIK 144 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD SL+IA+ASI+AKV RD L+ KYP Y + + GY + +H +++ GPS +HR Sbjct: 145 GDERSLAIASASIVAKVWRDDLVLRLALKYPMYNLERNKGYGSQRHLLALQQYGPSPLHR 204 Query: 199 LTFRPLR 205 +FRP + Sbjct: 205 QSFRPCQ 211 >gi|167720149|ref|ZP_02403385.1| ribonuclease HII [Burkholderia pseudomallei DM98] gi|167739156|ref|ZP_02411930.1| ribonuclease HII [Burkholderia pseudomallei 14] gi|167824746|ref|ZP_02456217.1| ribonuclease HII [Burkholderia pseudomallei 9] gi|167903248|ref|ZP_02490453.1| ribonuclease HII [Burkholderia pseudomallei NCTC 13177] gi|167911490|ref|ZP_02498581.1| ribonuclease HII [Burkholderia pseudomallei 112] gi|226200132|ref|ZP_03795678.1| ribonuclease HII [Burkholderia pseudomallei Pakistan 9] gi|254297220|ref|ZP_04964673.1| ribonuclease HII [Burkholderia pseudomallei 406e] gi|157807288|gb|EDO84458.1| ribonuclease HII [Burkholderia pseudomallei 406e] gi|225927816|gb|EEH23857.1| ribonuclease HII [Burkholderia pseudomallei Pakistan 9] Length = 214 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 88/183 (48%), Positives = 124/183 (67%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 V G+DE GRG LAGPVV AA++LDP G++DSK +S KKRE L+++I + A+ S+ Sbjct: 27 IVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAHALAYSV 86 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS + ID NI AT+ A+ AVE L V+P A IDG P L ++ A++ GD++ Sbjct: 87 ASASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM-LAIRSEAIVGGDALV 145 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+++P YGFD+H GY T +H ++E GP HR +F P Sbjct: 146 PSISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAP 205 Query: 204 LRN 206 +R Sbjct: 206 VRE 208 >gi|253702077|ref|YP_003023266.1| ribonuclease HII [Geobacter sp. M21] gi|259494065|sp|C6E5I4|RNH2_GEOSM RecName: Full=Ribonuclease HII; Short=RNase HII gi|251776927|gb|ACT19508.1| Ribonuclease H [Geobacter sp. M21] Length = 230 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 98/210 (46%), Positives = 130/210 (61%), Gaps = 7/210 (3%) Query: 1 MFCNSIPERP--HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN 58 +F ++ P+ P LE + + +AGIDE GRG LAGPVV AA+IL P + G+N Sbjct: 4 LFPDN-PKSPIDLLALEGQALRRGFFRIAGIDEAGRGPLAGPVVAAAVILPPGLLLPGVN 62 Query: 59 DSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117 DSK+++ +KREEL++ I A+ + + H +D+ NI +ATL A+ AV L + P Sbjct: 63 DSKQLTEEKREELFDVIHREALAVGVGIGDHALVDRINILQATLSAMRDAVRALSMTPGF 122 Query: 118 ALIDGRS-IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 LIDG S IP ++P V KGDS+SLSIA+ASIIAKVTRDR+M +YP YGF SH Sbjct: 123 LLIDGISNIPMNIP--QRTVKKGDSLSLSIASASIIAKVTRDRMMVEYDAQYPGYGFASH 180 Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 GY A H I E GP IHR TF ++ Sbjct: 181 KGYGAASHLAAIAELGPCPIHRKTFSGVKE 210 >gi|291614100|ref|YP_003524257.1| ribonuclease H [Sideroxydans lithotrophicus ES-1] gi|291584212|gb|ADE11870.1| Ribonuclease H [Sideroxydans lithotrophicus ES-1] Length = 191 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 82/184 (44%), Positives = 117/184 (63%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + G+DE GRG LAGPV AA+ILD + G+ DSKK+S ++R++L I A+ ++ Sbjct: 6 LICGVDEAGRGPLAGPVSAAAVILDKSRPIEGLADSKKLSERQRDQLAPLIRERALAWAV 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI +ATL A+ AV L P+ L+DG P+ + A++KGDS Sbjct: 66 AYAEVEEIDRLNILQATLLAMKRAVLALHTQPQQVLVDGLYCPQT-GIPSQAIVKGDSKV 124 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AK RD LM H++YP YGFD H GYPTA H +++ G S +HR +FRP Sbjct: 125 AAISAASILAKTARDELMLKMHEQYPQYGFDGHKGYPTAAHLAALRQHGVSDVHRRSFRP 184 Query: 204 LRNL 207 +R L Sbjct: 185 VREL 188 >gi|310641522|ref|YP_003946280.1| ribonuclease hii [Paenibacillus polymyxa SC2] gi|309246472|gb|ADO56039.1| Ribonuclease HII [Paenibacillus polymyxa SC2] Length = 229 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 86/192 (44%), Positives = 114/192 (59%), Gaps = 4/192 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E E++ +AGIDEVGRG L G VV AA+IL + G++DSKK++ KKRE Sbjct: 26 LHYEKKCWEQSCERIAGIDEVGRGCLFGDVVAAAVILPVGELLEGVDDSKKLTDKKREAY 85 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YE I AI + + + ID+ NI +A A+ AVE L V P L+D + D+P Sbjct: 86 YELIMEKAIAVGVGHVDARMIDEINIKQAARLAMKKAVEALHVSPDYLLVDAEKV--DVP 143 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMR-IAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++IKGD+ S SIAAASIIAKVTRDRL + KYP+YG H GY T H++ I Sbjct: 144 IPQLSIIKGDANSQSIAAASIIAKVTRDRLCKGEWDAKYPEYGIGIHKGYATKLHREQIL 203 Query: 190 EKGPSCIHRLTF 201 GP+ +HR +F Sbjct: 204 ALGPTEMHRRSF 215 >gi|120437251|ref|YP_862937.1| ribonuclease HII [Gramella forsetii KT0803] gi|189043601|sp|A0M5H5|RNH2_GRAFK RecName: Full=Ribonuclease HII; Short=RNase HII gi|117579401|emb|CAL67870.1| ribonuclease HII [Gramella forsetii KT0803] Length = 198 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 70/180 (38%), Positives = 101/180 (56%), Gaps = 1/180 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG DE GRG LAGPV AA+IL +NDSK ++ K R L I AI ++ Sbjct: 11 VAGADEAGRGCLAGPVTAAAVILPIEFKNAVLNDSKTLNLKNRNFLKSLIEDEAITYGVA 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + ID+ NI A++ A++ A++ L+ P ++DG +IKGD + Sbjct: 71 HVFMKEIDEINILNASILAMHRALQVLKFDPDHIIVDGNRFKPYQKIPHECIIKGDGKYM 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASI+AK RD M H+++PDY + + GYPT +H+ IK+ G + HR +F+ L Sbjct: 131 SIAAASILAKTYRDEFMEKIHEEFPDYNWKKNKGYPTKEHRAAIKKYGVTKYHRKSFKLL 190 >gi|313638164|gb|EFS03420.1| ribonuclease HII [Listeria seeligeri FSL S4-171] Length = 261 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 89/195 (45%), Positives = 118/195 (60%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + ++ +AG+DEVGRG LAGPVV AA+IL N GINDSK++S KRE L+ Sbjct: 60 QYENDLYQQGYKFIAGVDEVGRGPLAGPVVAAAVILPENFSVVGINDSKQLSELKRETLF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I AI + + H ID+ NI++AT A+ A++ L P LID P Sbjct: 120 ELIKQQAIAVGVGIIEHDVIDEVNIYEATKLAMRMALDELNPSPDFILIDAM--PLKYTE 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM+ YP Y F S++GY T KH + Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRLMKDYDVAYPGYDFASNMGYGTKKHLIGLDTI 237 Query: 192 GPSCIHRLTFRPLRN 206 G IHRL+F P++ Sbjct: 238 GVCPIHRLSFAPVKE 252 >gi|134277824|ref|ZP_01764539.1| ribonuclease HII [Burkholderia pseudomallei 305] gi|134251474|gb|EBA51553.1| ribonuclease HII [Burkholderia pseudomallei 305] Length = 214 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 88/183 (48%), Positives = 124/183 (67%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 V G+DE GRG LAGPVV AA++LDP G++DSK +S KKRE L+++I + A+ S+ Sbjct: 27 IVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAHALAYSV 86 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS + ID NI AT+ A+ AVE L V+P A IDG P L ++ A++ GD++ Sbjct: 87 ASASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM-LAIRSEAIVGGDALV 145 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+++P YGFD+H GY T +H ++E GP HR +F P Sbjct: 146 PSISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAP 205 Query: 204 LRN 206 +R Sbjct: 206 VRE 208 >gi|312865274|ref|ZP_07725502.1| ribonuclease HII [Streptococcus downei F0415] gi|311099385|gb|EFQ57601.1| ribonuclease HII [Streptococcus downei F0415] Length = 255 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 121/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL + G+NDSKKI K+ + Sbjct: 58 LAYEKALYADGLELIAGIDEVGRGPLAGPVVAAAVILPKDCKIKGLNDSKKIPKKRHGLI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y ++ A+ + I S++ ID NI++AT A+ AV L + P+ LID + DL Sbjct: 118 YNQVMDQALAVGIGLKSNEVIDHVNIYEATKLAMLEAVGQLALRPQHLLIDAMDL--DLE 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRDRLM +K+P Y F + GY T H + +K+ Sbjct: 176 IPQTSIIKGDASSLSIAAASIVAKVTRDRLMADYDEKFPGYDFSHNAGYGTKSHLEGLKK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G S IHR +F P++++ Sbjct: 236 WGVSPIHRRSFEPVKSM 252 >gi|332881721|ref|ZP_08449369.1| ribonuclease HII [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680360|gb|EGJ53309.1| ribonuclease HII [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 207 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 105/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG LAG V AA+IL + +NDSK++S KKR L E+I A+ ++ Sbjct: 13 AGLDEAGRGCLAGAVYAAAVILQKDYRNEMLNDSKQLSEKKRYLLREQIERDALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + Q ID+ NI A+ A++ A++ L V P + L+DG V+KGD +S Sbjct: 73 VTPQEIDEINILNASFLAMHRALDQLAVRPEALLVDGNRFKPYRDLPHTTVVKGDGKYMS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H++YP Y +DS+ GYP H++ I+ G + HR+++ L Sbjct: 133 IAAASILAKTYRDDYMLRLHEEYPVYHWDSNKGYPAKAHREAIRRHGVTPYHRMSYNLL 191 >gi|313204705|ref|YP_004043362.1| RNAse hii [Paludibacter propionicigenes WB4] gi|312444021|gb|ADQ80377.1| RNase HII [Paludibacter propionicigenes WB4] Length = 220 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 67/176 (38%), Positives = 103/176 (58%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRG LAGPVV AA+IL + +NDSK++S ++R+ L I A+ ++ Sbjct: 14 CGCDEAGRGCLAGPVVAAAVILPADFDCPLLNDSKQLSEQERDTLRPIIEQQALAWGVAL 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ID+ NI A++ A++ A++ L + P ++DG ++KGDS LS Sbjct: 74 VDSGEIDEINILNASILAMHRAIDKLNIRPEFIIVDGNKFKSYADIPYQTIVKGDSKYLS 133 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAAS++AK RD +M+ H +YP Y +D + YPT KH+ I++ G + HRL++ Sbjct: 134 IAAASVLAKTHRDEMMQQLHAEYPHYDWDKNKAYPTVKHRNAIRKFGTTPYHRLSY 189 >gi|213962065|ref|ZP_03390330.1| ribonuclease HII [Capnocytophaga sputigena Capno] gi|213955418|gb|EEB66735.1| ribonuclease HII [Capnocytophaga sputigena Capno] Length = 198 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 67/186 (36%), Positives = 101/186 (54%), Gaps = 3/186 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV A +IL P+ + DSK+++ K+R L I A+ ++ Sbjct: 12 AGTDEAGRGCLAGPVTAAGVILPPDFKNDLLTDSKQLTEKQRNLLRPIIEREAVAYAVCH 71 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ID+ NI +A++ A++ A+ L P +DG V+KGD + Sbjct: 72 VLPAEIDELNILRASITAMHRAIAQLSPTPEFIAVDGNKFVPYQKIPYACVVKGDGKIQT 131 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR--P 203 IAAASI+AK RD M +++P+Y + + GYPT +H++ I E G + HR TF+ P Sbjct: 132 IAAASILAKTYRDAYMEDLAQQFPEYHWQQNKGYPTPEHRKAIAEHGATEHHRKTFQLLP 191 Query: 204 LRNLSV 209 + LS+ Sbjct: 192 VEQLSL 197 >gi|83319843|ref|YP_424513.1| ribonuclease HII, putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|97182957|sp|Q2SRV0|RNH2_MYCCT RecName: Full=Ribonuclease HII; Short=RNase HII gi|83283729|gb|ABC01661.1| ribonuclease HII, putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 207 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 77/204 (37%), Positives = 123/204 (60%), Gaps = 2/204 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + R F+ + + + N+ ++G DE GRG LAGP+VVA++IL P+ I DSKK++ Sbjct: 1 MINRKSFD-DQIKLDHNITYLSGSDEAGRGCLAGPLVVASVILKPDYFNPLIKDSKKLNP 59 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 K R+ L+++I + + I S + +D+ N +A+L + NL++ P ALIDG Sbjct: 60 KTRQVLFDEIIKNCLDYQIMIISSKQVDELNPLQASLLGFKTTISNLKITPDLALIDGNQ 119 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + ++IKGD S SIA +SI+AKVTRD+++ + YP+YGF SH GY T KH Sbjct: 120 NINLENIKTLSIIKGDDNSFSIACSSILAKVTRDKILDQYDQIYPNYGFKSHKGYCTKKH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRNLS 208 I++ G IHR +++P++ +S Sbjct: 180 LLAIQKYGVLDIHRKSYKPIKKIS 203 >gi|258406140|ref|YP_003198882.1| Ribonuclease H [Desulfohalobium retbaense DSM 5692] gi|257798367|gb|ACV69304.1| Ribonuclease H [Desulfohalobium retbaense DSM 5692] Length = 197 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 76/182 (41%), Positives = 104/182 (57%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 + VAG+DE GRG LAGPVV AA+IL G+ DSK++S K+RE L I A+ + Sbjct: 5 YRVAGVDEAGRGCLAGPVVAAAVILPKTWDLPGMTDSKQLSAKRREVLAGAIKEQALYWA 64 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + ID NI ++T A+ A+E L +P IDG P +++ GDS Sbjct: 65 LGVVWPPVIDTINILQSTKRAMLTAIERLGHVPDMVYIDGNQ-PVPTSLPQKSIVGGDSS 123 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RDR+M ++YP YGF H GY T H + ++ GPS +HRLTF+ Sbjct: 124 EPCIAAASIVAKTFRDRVMVSLERRYPGYGFARHKGYGTRAHLEALRRLGPSRMHRLTFK 183 Query: 203 PL 204 + Sbjct: 184 GV 185 >gi|89895335|ref|YP_518822.1| hypothetical protein DSY2589 [Desulfitobacterium hafniense Y51] gi|122482323|sp|Q24UB4|RNH2_DESHY RecName: Full=Ribonuclease HII; Short=RNase HII gi|89334783|dbj|BAE84378.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 260 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 86/196 (43%), Positives = 114/196 (58%), Gaps = 2/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +AGIDE GRG LAGPVV A IL G+NDSKK++ KRE+L Sbjct: 61 LREEKQLWLNGYLHIAGIDEAGRGPLAGPVVAATCILPAKFNLPGLNDSKKLTESKREKL 120 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +++I AI ++ SA ID NI +AT A+ AVE L+V P LID +P L Sbjct: 121 FQQIKEQAIGYAVGSAEPAEIDGLNILQATKLAMKRAVEGLKVRPHFLLIDALELP-SLK 179 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD++S SIAAASI+AKV+RD LM K YP+YGF + GY T +H ++ Sbjct: 180 IPQKGIIDGDALSASIAAASILAKVSRDHLMGELDKLYPEYGFAKNKGYGTREHLMALRR 239 Query: 191 KGPSCIHRLTFRPLRN 206 G S IHR +F P++ Sbjct: 240 CGVSPIHRRSFAPVQQ 255 >gi|163754098|ref|ZP_02161221.1| ribonuclease HII [Kordia algicida OT-1] gi|161326312|gb|EDP97638.1| ribonuclease HII [Kordia algicida OT-1] Length = 198 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 102/179 (56%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL + +NDSK++S KKRE L I A+ ++ Sbjct: 12 AGTDEAGRGCLAGPVTAAAVILPKDFSNEILNDSKQLSEKKREILRPVIELEALTFGVAH 71 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 IDK NI A++ ++ A+ L +P ++DG +IKGD L+ Sbjct: 72 IYPVEIDKINILNASILGMHQAIAKLSTVPEHIIVDGNKFKPYKDIPYQTIIKGDGKYLN 131 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAAS++AK RD M H+++P Y + + GYPT +H++ IK+ G + HR++FR L Sbjct: 132 IAAASVLAKTYRDAYMEKIHEEFPMYNWKKNKGYPTVEHREAIKKYGTTKYHRMSFRLL 190 >gi|260061789|ref|YP_003194869.1| ribonuclease HII [Robiginitalea biformata HTCC2501] gi|88785921|gb|EAR17090.1| ribonuclease HII [Robiginitalea biformata HTCC2501] Length = 198 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 107/179 (59%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85 AG DE GRG LAGPV AA+IL +NDSKK+S +RE L KI A+ ++ Sbjct: 12 AGTDEAGRGCLAGPVTAAAVILPERFEDPLLNDSKKLSADQRERLAPKILREALATGVAH 71 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ID+ NI +A+L A++ A++ L + P + +DG +++GD L+ Sbjct: 72 IPPATIDEINILQASLQAMHRALDQLGMRPEAIAVDGNRFLPYEGIPYQCLVRGDGRYLN 131 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAAS++AK RD MR H++YP YG+D + GYPT +H++ +++ GPS HR +FR L Sbjct: 132 IAAASVLAKTARDARMRELHREYPQYGWDRNKGYPTQEHREALRKHGPSPYHRQSFRLL 190 >gi|157964267|ref|YP_001499091.1| ribonuclease HII [Rickettsia massiliae MTU5] gi|189043648|sp|A8F0V8|RNH2_RICM5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|157844043|gb|ABV84544.1| Ribonuclease HII [Rickettsia massiliae MTU5] Length = 194 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 88/178 (49%), Positives = 113/178 (63%), Gaps = 2/178 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 VAGIDE GRG LAGPVV +A+I+D NI GI DSKK+S K RE LYE+ITS+ + + + Sbjct: 17 IVAGIDEAGRGPLAGPVVASAVIIDNANIITGIKDSKKLSKKTRELLYEQITSNYVWATA 76 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SH ID NI +AT A AV NL + P L+DG +D + ++I GD++SL Sbjct: 77 IISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKD--ERFVSIINGDNLSL 134 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SIAAASI+AKVTRDRLM + P Y + + GY T +H + I G S HR +FR Sbjct: 135 SIAAASIVAKVTRDRLMLDLSAELPQYLWHKNSGYGTKEHIEAINIHGLSPYHRRSFR 192 >gi|22298205|ref|NP_681452.1| ribonuclease H [Thermosynechococcus elongatus BP-1] gi|39932394|sp|Q8DL36|RNH2_THEEB RecName: Full=Ribonuclease HII; Short=RNase HII gi|22294384|dbj|BAC08214.1| ribonuclease H [Thermosynechococcus elongatus BP-1] Length = 214 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 82/202 (40%), Positives = 117/202 (57%), Gaps = 5/202 (2%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHK 66 E E ++ V G+DEVGRG LAGPVV AA+IL + +P + DSK+++ + Sbjct: 2 EPLSLIYEQAYWQQGYSRVVGVDEVGRGCLAGPVVAAAVILPVDCVPLPEVRDSKQLTAR 61 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R L+ +I AI I I SAS ID+ NI +AT A+ A+ + ALIDG+ Sbjct: 62 QRSRLFAQIYHQAIAIGIGSASVAEIDQVNILQATYRAMARALGRVAPW-DHALIDGKLT 120 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 + A+I GD S SIA ASIIAKV RDR M ++YP YG++ +VGY T +H+ Sbjct: 121 KTAPFERVTAIIGGDRHSYSIACASIIAKVRRDRFMARLARRYPQYGWERNVGYGTPEHR 180 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 Q + + G + HR +F L++L Sbjct: 181 QALDQYGLTPWHRRSF--LKSL 200 >gi|34540527|ref|NP_905006.1| ribonuclease HII [Porphyromonas gingivalis W83] gi|38605679|sp|Q51832|RNH2_PORGI RecName: Full=Ribonuclease HII; Short=RNase HII gi|34396840|gb|AAQ65905.1| ribonuclease HII [Porphyromonas gingivalis W83] Length = 201 Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 99/179 (55%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRG LAGPV AA+IL + +NDSK++S K+R L I S I I Sbjct: 14 CGCDEAGRGCLAGPVYAAAVILPADFSHPLLNDSKQLSEKQRYTLRPVIESETIGWGIGI 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S Q ID+ NI +A+ A++ A+E L P LIDG ++ GD+ S Sbjct: 74 VSPQEIDEINILRASFLAMHRAIEQLPFRPERLLIDGNRFDPFEQIPHHCIVGGDARYRS 133 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M +K +P YG++ + GYP+ H+ I+ G S HRLTFR + Sbjct: 134 IAAASILAKTYRDDSMLRLNKDFPMYGWERNKGYPSPAHKSAIRRFGVSPHHRLTFRGV 192 >gi|317406254|gb|EFV86498.1| ribonuclease HII [Achromobacter xylosoxidans C54] Length = 202 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 83/184 (45%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG LAG V AA+ILDP G+ DSK + RE L +I + A+ ++S Sbjct: 18 AGVDEAGRGPLAGAVYAAAVILDPARPIDGLADSKVLKAATREALALEIQAHALAWCVAS 77 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS ID NI +ATL A+ AVE L + P+ AL+DG P+ L C VIKGD++ + Sbjct: 78 ASVAEIDSLNILRATLLAMRRAVEGLSLAPQLALVDGNQAPK-LGCTVQTVIKGDALVPA 136 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AK RD + H YP Y FD H GY TA H Q+++E GP HR +F P++ Sbjct: 137 ISAASILAKTARDADLLRLHSLYPQYAFDQHKGYGTALHLQMLREHGPCAEHRRSFAPIK 196 Query: 206 NLSV 209 + Sbjct: 197 AFGL 200 >gi|20372971|dbj|BAB91155.1| ribonuclease HII [Geobacillus stearothermophilus] Length = 259 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 83/195 (42%), Positives = 121/195 (62%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + +AGIDE GRG LAGPVV A++IL P+ G++DSK+++ KRE L+ Sbjct: 61 RYERELYAAGIERIAGIDEAGRGPLAGPVVAASVILPPDAYLPGLDDSKRLTAAKREALF 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I + A+ + I S ID+ NI++AT A+ AV L P L+D ++P LP Sbjct: 121 AQIEACAVAVGIGIVSAAEIDERNIYEATKQAMAKAVSALSPPPDYLLVDAMAVPCALP- 179 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++KGD+ S SIAAASI+AKVTRDRLM+ ++YP YGF H+GY T +H + I+ Sbjct: 180 -QRRLMKGDANSASIAAASIMAKVTRDRLMKELDRRYPQYGFARHMGYGTPEHLEAIRRY 238 Query: 192 GPSCIHRLTFRPLRN 206 G + HR +F P++ Sbjct: 239 GITPEHRRSFAPVKE 253 >gi|323700101|ref|ZP_08112013.1| Ribonuclease H [Desulfovibrio sp. ND132] gi|323460033|gb|EGB15898.1| Ribonuclease H [Desulfovibrio desulfuricans ND132] Length = 213 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 78/185 (42%), Positives = 104/185 (56%), Gaps = 5/185 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DE GRG LAGPVV A IL G++DSKK++ KRE LY +I A+ + Sbjct: 17 IAGVDEAGRGCLAGPVVAGACILPAEYDLPGLDDSKKLTAAKREALYPRIREQAVAWGLG 76 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED----LPCQAFAVIKGD 140 A ID+ NI +AT A+ AV L+ PR IDG + V++GD Sbjct: 77 VAWPWEIDEINILQATFRAMSRAVWALKAEPRFLRIDGDKLIPGHALQRDIPQECVVQGD 136 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 +I+AAS++AK RDRLM ++YP YG H+GY T H I+E GP +HRLT Sbjct: 137 GKVPAISAASVLAKTFRDRLMVRLARRYPGYGLAKHMGYGTEAHVAAIRELGPCRLHRLT 196 Query: 201 FRPLR 205 FR +R Sbjct: 197 FRKVR 201 >gi|53723725|ref|YP_103181.1| ribonuclease HII [Burkholderia mallei ATCC 23344] gi|67641696|ref|ZP_00440465.1| ribonuclease HII [Burkholderia mallei GB8 horse 4] gi|121600420|ref|YP_993357.1| ribonuclease HII [Burkholderia mallei SAVP1] gi|124383370|ref|YP_001029206.1| ribonuclease HII [Burkholderia mallei NCTC 10229] gi|126448047|ref|YP_001080864.1| ribonuclease HII [Burkholderia mallei NCTC 10247] gi|126454836|ref|YP_001066737.1| ribonuclease HII [Burkholderia pseudomallei 1106a] gi|167816367|ref|ZP_02448047.1| ribonuclease HII [Burkholderia pseudomallei 91] gi|167846278|ref|ZP_02471786.1| ribonuclease HII [Burkholderia pseudomallei B7210] gi|167894859|ref|ZP_02482261.1| ribonuclease HII [Burkholderia pseudomallei 7894] gi|167919499|ref|ZP_02506590.1| ribonuclease HII [Burkholderia pseudomallei BCC215] gi|217421612|ref|ZP_03453116.1| ribonuclease HII [Burkholderia pseudomallei 576] gi|242316504|ref|ZP_04815520.1| ribonuclease HII [Burkholderia pseudomallei 1106b] gi|254177550|ref|ZP_04884205.1| ribonuclease HII [Burkholderia mallei ATCC 10399] gi|254200133|ref|ZP_04906499.1| ribonuclease HII [Burkholderia mallei FMH] gi|254206471|ref|ZP_04912823.1| ribonuclease HII [Burkholderia mallei JHU] gi|254358121|ref|ZP_04974394.1| ribonuclease HII [Burkholderia mallei 2002721280] gi|81604828|sp|Q62JD8|RNH2_BURMA RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225173|sp|A3MKS8|RNH2_BURM7 RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225174|sp|A2SB87|RNH2_BURM9 RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225175|sp|A1V554|RNH2_BURMS RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225176|sp|A3NWL6|RNH2_BURP0 RecName: Full=Ribonuclease HII; Short=RNase HII gi|52427148|gb|AAU47741.1| ribonuclease HII [Burkholderia mallei ATCC 23344] gi|121229230|gb|ABM51748.1| ribonuclease HII [Burkholderia mallei SAVP1] gi|124291390|gb|ABN00659.1| ribonuclease HII [Burkholderia mallei NCTC 10229] gi|126228478|gb|ABN92018.1| ribonuclease HII [Burkholderia pseudomallei 1106a] gi|126240917|gb|ABO04010.1| ribonuclease HII [Burkholderia mallei NCTC 10247] gi|147749729|gb|EDK56803.1| ribonuclease HII [Burkholderia mallei FMH] gi|147753914|gb|EDK60979.1| ribonuclease HII [Burkholderia mallei JHU] gi|148027248|gb|EDK85269.1| ribonuclease HII [Burkholderia mallei 2002721280] gi|160698589|gb|EDP88559.1| ribonuclease HII [Burkholderia mallei ATCC 10399] gi|217395354|gb|EEC35372.1| ribonuclease HII [Burkholderia pseudomallei 576] gi|238522657|gb|EEP86100.1| ribonuclease HII [Burkholderia mallei GB8 horse 4] gi|242139743|gb|EES26145.1| ribonuclease HII [Burkholderia pseudomallei 1106b] Length = 214 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 88/183 (48%), Positives = 124/183 (67%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 V G+DE GRG LAGPVV AA++LDP G++DSK +S KKRE L+++I + A+ S+ Sbjct: 27 IVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAYALAYSV 86 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS + ID NI AT+ A+ AVE L V+P A IDG P L ++ A++ GD++ Sbjct: 87 ASASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM-LAIRSEAIVGGDALV 145 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+++P YGFD+H GY T +H ++E GP HR +F P Sbjct: 146 PSISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAP 205 Query: 204 LRN 206 +R Sbjct: 206 VRE 208 >gi|257126162|ref|YP_003164276.1| ribonuclease H [Leptotrichia buccalis C-1013-b] gi|257050101|gb|ACV39285.1| Ribonuclease H [Leptotrichia buccalis C-1013-b] Length = 214 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 80/188 (42%), Positives = 113/188 (60%), Gaps = 3/188 (1%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKI 75 EK V G+DE GRG LAGPVV A+I+ + INDSKK++ KKRE L+E I Sbjct: 15 EFDEKYNKIVVGVDEAGRGPLAGPVVAGAVIVIQDFPELQEINDSKKLTEKKRERLFEAI 74 Query: 76 TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIPEDLPCQA 133 + I+ I AS + ID+ NI AT A+ A+ + + L+DG + + + Sbjct: 75 EKNCIVGIGIASEKEIDEMNILNATFLAMRRAINQVAEKSAFDIVLVDGNHLIREYEGEQ 134 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++KGDS SL+IA ASI+AKVTRDR++ K++P+Y F+ H GY T KH++++ EKG Sbjct: 135 ECIVKGDSKSLAIATASIVAKVTRDRMLCEIAKEFPEYQFEKHKGYGTKKHREILLEKGA 194 Query: 194 SCIHRLTF 201 HR TF Sbjct: 195 CRYHRKTF 202 >gi|113474350|ref|YP_720411.1| ribonuclease HII [Trichodesmium erythraeum IMS101] gi|123352730|sp|Q118Y6|RNH2_TRIEI RecName: Full=Ribonuclease HII; Short=RNase HII gi|110165398|gb|ABG49938.1| RNase HII [Trichodesmium erythraeum IMS101] Length = 211 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 109/184 (59%), Gaps = 5/184 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA-II 81 AG+DEVGRGAL GPVV AA+IL + + G+ DSKK++ K+R L I + A Sbjct: 20 AGVDEVGRGALFGPVVAAAVILPEDVLDDLASTGVTDSKKLTEKRRCHLASLIRTVAWDC 79 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I AS + ID+ NI KA+L A+ AV L++ P L+DG DL V+KGDS Sbjct: 80 QIGIASVREIDRLNILKASLLAMKRAVLRLKLRPDLVLVDGNQEIRDLFIPQRTVVKGDS 139 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 L+IAAASI+AKV RD L+ KKYP Y + GY T KH+Q I G S HRL+F Sbjct: 140 KCLAIAAASIVAKVWRDTLIMRLAKKYPVYDLTKNKGYGTKKHKQGIINYGVSPQHRLSF 199 Query: 202 RPLR 205 P + Sbjct: 200 SPCQ 203 >gi|331703424|ref|YP_004400111.1| ribonuclease H II [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801979|emb|CBW54133.1| Ribonuclease H II [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 207 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 75/204 (36%), Positives = 123/204 (60%), Gaps = 2/204 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + +R F+ + + + N+ ++G DE GRG LAGP+VVA++IL P+ I DSKK++ Sbjct: 1 MIDRKLFD-DQIKLDHNITYLSGSDEAGRGCLAGPLVVASVILKPDYFNPLIKDSKKLNP 59 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 K R+ L+++I + + I S + +D+ N +A+L + NL++ P LIDG Sbjct: 60 KTRQILFDEIIKNCLDYQIIVISSKQVDELNPLQASLLGFKTTISNLKITPDLGLIDGNQ 119 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + ++IKGD S SIA +SI+AKVTRD+++ + YP+YGF SH GY T +H Sbjct: 120 NINLENIKTLSIIKGDDKSFSIACSSILAKVTRDKILDEYDQIYPNYGFKSHKGYCTKQH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRNLS 208 I++ G IHR +++P++ +S Sbjct: 180 LLAIQKYGVLDIHRKSYKPIKKIS 203 >gi|158424022|ref|YP_001525314.1| ribonuclease HII [Azorhizobium caulinodans ORS 571] gi|189043564|sp|A8I6E6|RNH2_AZOC5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|158330911|dbj|BAF88396.1| ribonuclease H [Azorhizobium caulinodans ORS 571] Length = 259 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 94/195 (48%), Positives = 126/195 (64%), Gaps = 1/195 (0%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F+ E V + M PVAG DE GRG LAGPVV AA+ILDP IP G++DSKK++ +RE Sbjct: 42 SFKRERAVLKSGMAPVAGADEAGRGPLAGPVVAAAVILDPKRIPAGLDDSKKLTATRREA 101 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 L+++I ++A +S+ A ID+ NI +ATL A+ +AV+ L PR +DG P L Sbjct: 102 LFDEICATAEVSVVMAPPSRIDRDNIRQATLWALANAVKGLPEDPRLVFVDGNDRPP-LE 160 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 C+ VI GD + SIAAASI+AKVTRDRLM +P YGF+ H+GY TA+H ++ Sbjct: 161 CEVEMVIGGDGLIASIAAASIVAKVTRDRLMVGLGAAFPGYGFERHMGYGTAEHGAALRR 220 Query: 191 KGPSCIHRLTFRPLR 205 GP HR +F P+R Sbjct: 221 LGPCRHHRTSFAPVR 235 >gi|225849921|ref|YP_002730155.1| ribonuclease HII [Persephonella marina EX-H1] gi|225645751|gb|ACO03937.1| ribonuclease HII [Persephonella marina EX-H1] Length = 198 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 77/192 (40%), Positives = 108/192 (56%), Gaps = 5/192 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++E + K +AGIDE GRG +AGPVV A++I N PF DSKK++ K+REEL Sbjct: 2 LQIEKELWSKGFKNIAGIDEAGRGPVAGPVVAASVIFPQNIEPFIFKDSKKLTKKQREEL 61 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + +I A+ + I + ID+ NI+ AT A+ A+E++ + D P Sbjct: 62 FTQIKERALAVGIGIVDNSVIDRINIYNATKLAMKRAIEDMNHNFDYLITDYVKFD---P 118 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++ K D SLS+AAASIIAKV RDR+M K YP FD H GY T H++ I Sbjct: 119 YPHISLKKADEKSLSVAAASIIAKVFRDRIMEEFSKYYPH-SFDKHKGYLTELHREEIIR 177 Query: 191 KGPSCIHRLTFR 202 G + IHR +F+ Sbjct: 178 YGLTPIHRKSFK 189 >gi|168216993|ref|ZP_02642618.1| ribonuclease HII [Clostridium perfringens NCTC 8239] gi|182380928|gb|EDT78407.1| ribonuclease HII [Clostridium perfringens NCTC 8239] Length = 272 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 89/189 (47%), Positives = 114/189 (60%), Gaps = 7/189 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA 79 VAG+DEVGRG LAGP+V AA+ILD ++I INDSKK+S KREEL E I A Sbjct: 86 YKYVAGVDEVGRGPLAGPIVSAAVILDSSDLDDIILYINDSKKLSEHKREELSEIIKEKA 145 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + SIS + ID+ I D A E L + P L DG + ++ + VIK Sbjct: 146 LSYSISMCDSKEIDEKGIGYCNNDVFIKACEGLSIKPDLVLSDGY-LIKNFNGENKHVIK 204 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD+ S IA ASIIAKV RD +M+ HKKYP Y F+ +VGY T H +KE GP+ IHR Sbjct: 205 GDTKSACIACASIIAKVYRDNIMKEYHKKYPQYDFEKNVGYGTKTHVDALKEVGPTEIHR 264 Query: 199 LTFRPLRNL 207 ++F L+N+ Sbjct: 265 MSF--LKNI 271 >gi|46398973|gb|AAS92172.1| RNase H ribonuclease [Legionella pneumophila] gi|46398975|gb|AAS92173.1| RNase H ribonuclease [Legionella pneumophila] Length = 191 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 80/184 (43%), Positives = 110/184 (59%), Gaps = 4/184 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DEVGRG LAG VV AA+IL G+ DSKK+S K+R L +I A+ + Sbjct: 10 AGVDEVGRGPLAGAVVTAAVILKK--PIDGLTDSKKLSPKQRNLLAVRIKEEALAFAYGR 67 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A + ID+ NIH ATL A+ AVE L + P + ++DG P+ L A+++GDS+ Sbjct: 68 AEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVVVDGAFTPQ-LNIPCKAIVQGDSLIPE 126 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AKV RD M K YP YGF H GY T H++ + GP IHR ++ P+ Sbjct: 127 ISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYSPVA 186 Query: 206 NLSV 209 +L + Sbjct: 187 DLIL 190 >gi|163782691|ref|ZP_02177688.1| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Hydrogenivirga sp. 128-5-R1-1] gi|159882264|gb|EDP75771.1| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Hydrogenivirga sp. 128-5-R1-1] Length = 190 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 83/191 (43%), Positives = 117/191 (61%), Gaps = 5/191 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + + VAG+DE GRG LAGPVV +A+IL P PF DSKK+S K+REELY Sbjct: 3 EHEEKFWREGL-LVAGVDEAGRGPLAGPVVASAVILPPFTEPFLKGDSKKLSRKEREELY 61 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I +A+ + + ID+ NI++AT A+ A+++L+ + D + E Sbjct: 62 ELIKETALAVGTAVVDSAVIDRINIYQATKLAMKRALDDLKHPFDVVISDYVKLEE---F 118 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++KGD SLS A AS++AKV RDR+M H+ YP+Y F H GYPT KH+++IK+ Sbjct: 119 NCLPLVKGDERSLSCACASVVAKVLRDRIMERFHEVYPEYEFVKHKGYPTKKHRELIKKF 178 Query: 192 GPSCIHRLTFR 202 G + IHR +FR Sbjct: 179 GITEIHRRSFR 189 >gi|16803313|ref|NP_464798.1| ribonuclease HII [Listeria monocytogenes EGD-e] gi|47097416|ref|ZP_00234965.1| ribonuclease HII [Listeria monocytogenes str. 1/2a F6854] gi|254829970|ref|ZP_05234625.1| ribonuclease HII [Listeria monocytogenes 10403S] gi|254898562|ref|ZP_05258486.1| ribonuclease HII [Listeria monocytogenes J0161] gi|254911948|ref|ZP_05261960.1| ribonuclease HII [Listeria monocytogenes J2818] gi|254936274|ref|ZP_05267971.1| rnhB [Listeria monocytogenes F6900] gi|284801658|ref|YP_003413523.1| hypothetical protein LM5578_1411 [Listeria monocytogenes 08-5578] gi|284994800|ref|YP_003416568.1| hypothetical protein LM5923_1364 [Listeria monocytogenes 08-5923] gi|38258623|sp|Q8Y7K4|RNH2_LISMO RecName: Full=Ribonuclease HII; Short=RNase HII gi|16410689|emb|CAC99351.1| rnhB [Listeria monocytogenes EGD-e] gi|47014215|gb|EAL05199.1| ribonuclease HII [Listeria monocytogenes str. 1/2a F6854] gi|258608863|gb|EEW21471.1| rnhB [Listeria monocytogenes F6900] gi|284057220|gb|ADB68161.1| hypothetical protein LM5578_1411 [Listeria monocytogenes 08-5578] gi|284060267|gb|ADB71206.1| hypothetical protein LM5923_1364 [Listeria monocytogenes 08-5923] gi|293589909|gb|EFF98243.1| ribonuclease HII [Listeria monocytogenes J2818] Length = 261 Score = 237 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 88/195 (45%), Positives = 121/195 (62%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ L+ Sbjct: 60 QYETDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 EKI AI I + H ID+ NI++AT A+ A+ L P LID P Sbjct: 120 EKIKKEAIAIGVGIIEHDVIDQVNIYEATKLAMCEALNQLTPEPDFVLIDAM--PLRYTE 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM++ +KYP Y F +++GY T KH + Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGTKKHLLGLDTI 237 Query: 192 GPSCIHRLTFRPLRN 206 G IHR++F P++ Sbjct: 238 GICPIHRMSFSPVKE 252 >gi|255037595|ref|YP_003088216.1| Ribonuclease H [Dyadobacter fermentans DSM 18053] gi|254950351|gb|ACT95051.1| Ribonuclease H [Dyadobacter fermentans DSM 18053] Length = 208 Score = 237 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 76/181 (41%), Positives = 112/181 (61%), Gaps = 1/181 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY-EKITSSAIISISS 85 AG+DEVGRG LAGPVV AA+IL + +NDSK+++ +R EL E I S +++ Sbjct: 13 AGLDEVGRGCLAGPVVAAAVILPRDYKHSFLNDSKQLTKAQRLELEKEIIRESVCWAVAE 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + ID+ NI KA+ A++ AV+ L+V P L+DG +IKGD+ LS Sbjct: 73 VDNLEIDRINILKASFLAMHRAVDKLRVRPEHLLVDGNRFTPYPMIPHTCIIKGDAHYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 IAAAS++AK RD LM +++P YG++ +VGYPT H++ I GP HR+TF+ ++ Sbjct: 133 IAAASVLAKNYRDELMSNLSRQFPHYGWEQNVGYPTIHHRKAIVLHGPCSYHRMTFKLIK 192 Query: 206 N 206 + Sbjct: 193 S 193 >gi|325285587|ref|YP_004261377.1| Ribonuclease H [Cellulophaga lytica DSM 7489] gi|324321041|gb|ADY28506.1| Ribonuclease H [Cellulophaga lytica DSM 7489] Length = 208 Score = 237 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 73/178 (41%), Positives = 103/178 (57%), Gaps = 1/178 (0%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSA 86 G DE GRG LAGPV AAIIL N +NDSK +S KKRE L I AI ++ Sbjct: 23 GTDEAGRGCLAGPVTAAAIILPENFKNDILNDSKLLSEKKRELLKPIIEEQAICYGVTHI 82 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSI 146 + ID+ NI A++ A++ +++ L P ++DG + +IKGDS LSI Sbjct: 83 YPKKIDEINILNASILAMHKSIDKLTTKPEFIIVDGNRFKPYKKIKHECIIKGDSKFLSI 142 Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 AAAS++AK RD M HK++P Y + + GYPT +H++ I+E G + HR +F+ L Sbjct: 143 AAASVLAKTYRDAYMEKIHKEFPMYNWKKNKGYPTKEHREAIREFGLTKYHRKSFKQL 200 >gi|310828460|ref|YP_003960817.1| hypothetical protein ELI_2873 [Eubacterium limosum KIST612] gi|308740194|gb|ADO37854.1| hypothetical protein ELI_2873 [Eubacterium limosum KIST612] Length = 262 Score = 237 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 82/196 (41%), Positives = 118/196 (60%), Gaps = 5/196 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 +E + + G DEVGRG LAGPVV AA+IL ++ ++DSKK+S K RE L Sbjct: 70 AVEEGFYGEGFQRIGGSDEVGRGPLAGPVVCAAVILPRDSAILHVDDSKKLSAKMREALD 129 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I + A+ ++I + + ID NI +AT A+ AV L P LID +I + Sbjct: 130 VQIRAEALSVAIGLRTPEQIDALNILEATKSAMSEAVSQLDPQPDLMLIDALTI--ETQA 187 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++ GD+ SIAAASI+AKV RD+LM H++YP+YGFD +VGY TA+H IK+ Sbjct: 188 EVRGIVHGDATCYSIAAASIVAKVYRDKLMHAYHEQYPEYGFDRNVGYGTAEHIAAIKKY 247 Query: 192 GPSCIHRLTFRPLRNL 207 G + IHR +F ++N Sbjct: 248 GLTPIHRRSF--VKNF 261 >gi|260425244|ref|ZP_05779224.1| ribonuclease HII [Citreicella sp. SE45] gi|260423184|gb|EEX16434.1| ribonuclease HII [Citreicella sp. SE45] Length = 191 Score = 237 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 86/181 (47%), Positives = 126/181 (69%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 AG+DEVGRG LAGPVV AA++LDP +P G+NDSKK++ K+R L + A +SI SA Sbjct: 2 AGVDEVGRGPLAGPVVAAAVVLDPRWVPPGLNDSKKLTAKRRARLSAWLWECAEVSIGSA 61 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSI 146 S + ID+ NI +A+L A++ AV L+ P L+DGR +P LPC+A +IKGD S+SI Sbjct: 62 SVEEIDQLNILQASLLAMHRAVTGLENAPGHVLVDGRFLPPQLPCEATPIIKGDGRSVSI 121 Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 AAAS++AK+ RDRLMR + +P YG++++ GY + H+ ++ G + HR +F+P+ N Sbjct: 122 AAASVVAKIWRDRLMRDLAQHHPGYGWETNAGYGSKSHKLALQNLGVTPHHRRSFKPIHN 181 Query: 207 L 207 + Sbjct: 182 I 182 >gi|53719754|ref|YP_108740.1| ribonuclease HII [Burkholderia pseudomallei K96243] gi|126441923|ref|YP_001059454.1| ribonuclease HII [Burkholderia pseudomallei 668] gi|237812793|ref|YP_002897244.1| ribonuclease HII [Burkholderia pseudomallei MSHR346] gi|254197441|ref|ZP_04903863.1| ribonuclease HII [Burkholderia pseudomallei S13] gi|81379508|sp|Q63T26|RNH2_BURPS RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225177|sp|A3NAT3|RNH2_BURP6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|52210168|emb|CAH36147.1| ribonuclease HII [Burkholderia pseudomallei K96243] gi|126221416|gb|ABN84922.1| ribonuclease HII [Burkholderia pseudomallei 668] gi|169654182|gb|EDS86875.1| ribonuclease HII [Burkholderia pseudomallei S13] gi|237504589|gb|ACQ96907.1| ribonuclease HII [Burkholderia pseudomallei MSHR346] Length = 214 Score = 237 bits (606), Expect = 7e-61, Method: Composition-based stats. Identities = 88/183 (48%), Positives = 123/183 (67%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 V G+DE GRG LAGPVV AA++LDP G++DSK +S KKRE L+++I A+ S+ Sbjct: 27 IVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVVHALAYSV 86 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS + ID NI AT+ A+ AVE L V+P A IDG P L ++ A++ GD++ Sbjct: 87 ASASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM-LAIRSEAIVGGDALV 145 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+++P YGFD+H GY T +H ++E GP HR +F P Sbjct: 146 PSISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAP 205 Query: 204 LRN 206 +R Sbjct: 206 VRE 208 >gi|300087868|ref|YP_003758390.1| ribonuclease H [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527601|gb|ADJ26069.1| Ribonuclease H [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 212 Score = 237 bits (606), Expect = 7e-61, Method: Composition-based stats. Identities = 82/200 (41%), Positives = 114/200 (57%), Gaps = 5/200 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN---IPFGINDSKKISHK 66 P F E+ + +AG+DE GRGALAGPVV AA+IL + DSK +S Sbjct: 8 PGFREESKLHGNGYRLIAGVDEAGRGALAGPVVAAAVILGRRRRSGWLKAVRDSKLLSPA 67 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 R+ LY IT +A+ + SH +ID+H I T A+ A+ENL P + LID ++ Sbjct: 68 NRDRLYGLITENALSWGVGVVSHHFIDRHGIVPGTRLAMALALENLDPSPEALLIDYLTL 127 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + +I GD++ +SIA AS+IAKVTRDRLM +YP Y F H GY TA+H Sbjct: 128 PA-VTLPQKGIIDGDAVCVSIACASVIAKVTRDRLMIGLDNRYPGYRFGRHKGYGTAEHL 186 Query: 186 QVIKEKGPSCIHRLTFRPLR 205 ++ GP +HR +F P++ Sbjct: 187 DCLERLGPCSVHRRSFAPVQ 206 >gi|73662831|ref|YP_301612.1| ribonuclease HII [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|97189330|sp|Q49X31|RNH2_STAS1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|72495346|dbj|BAE18667.1| ribonuclease HII [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 256 Score = 237 bits (606), Expect = 7e-61, Method: Composition-based stats. Identities = 83/197 (42%), Positives = 124/197 (62%), Gaps = 4/197 (2%) Query: 13 ELEAM-VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E E + E + GIDEVGRG LAGPVV A+IL+ N+ G+NDSKK+S K+R + Sbjct: 60 EFENSILAENPDALICGIDEVGRGPLAGPVVTCAVILNKNHHFTGLNDSKKLSAKQRHSI 119 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 K+ + + AS + ID+ NI++AT A++ A+E L++ P L+D ++ D+ Sbjct: 120 ESKLLNDVYAYAYGYASVEEIDEINIYEATKLAMHRAIEGLRIKPTHLLVDAMTL--DID 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ S+SIAAAS++AK RD+ MR +KYP Y F+++VGY T +H IK+ Sbjct: 178 IPQTSLIKGDAKSVSIAAASVLAKEHRDQYMRDLGRKYPGYSFENNVGYGTQQHLDGIKK 237 Query: 191 KGPSCIHRLTFRPLRNL 207 G HR TF P+++L Sbjct: 238 YGILNEHRKTFEPIKSL 254 >gi|326336306|ref|ZP_08202477.1| ribonuclease HII [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691480|gb|EGD33448.1| ribonuclease HII [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 197 Score = 237 bits (605), Expect = 7e-61, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 102/179 (56%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL + +NDSK+++ K+R EL I A+ ++ Sbjct: 11 AGTDEAGRGCLAGPVTAAAVILPEDFYHPLLNDSKQMTEKQRNELRSIIEMQALSYAVVH 70 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S Q ID+ NI A+++A+ A++ L + P ++DG +KGD+ + Sbjct: 71 LSPQRIDQINILNASIEAMQQALDKLSLTPEFIVVDGNRFKPYKEIPYSCQVKGDARFMR 130 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAAS++AK RD M HK++P Y +D + GYPT +H+ I E G HR TF+ + Sbjct: 131 IAAASVLAKTHRDAYMESLHKQFPMYHWDKNKGYPTREHRAAILEFGACEYHRKTFQLI 189 >gi|76809916|ref|YP_333960.1| ribonuclease HII [Burkholderia pseudomallei 1710b] gi|254189278|ref|ZP_04895789.1| ribonuclease HII [Burkholderia pseudomallei Pasteur 52237] gi|254259229|ref|ZP_04950283.1| ribonuclease HII [Burkholderia pseudomallei 1710a] gi|97182323|sp|Q3JR43|RNH2_BURP1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|76579369|gb|ABA48844.1| ribonuclease HII [Burkholderia pseudomallei 1710b] gi|157936957|gb|EDO92627.1| ribonuclease HII [Burkholderia pseudomallei Pasteur 52237] gi|254217918|gb|EET07302.1| ribonuclease HII [Burkholderia pseudomallei 1710a] Length = 214 Score = 237 bits (605), Expect = 8e-61, Method: Composition-based stats. Identities = 88/183 (48%), Positives = 123/183 (67%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 V G+DE GRG LAGPVV AA++LDP G++DSK +S KKRE L+++I + A+ S+ Sbjct: 27 IVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAHALAYSV 86 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS + ID NI AT+ A+ AVE L V+P A IDG P L ++ A++ GD++ Sbjct: 87 ASASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM-LAIRSEAIVGGDALV 145 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR + H+++P YGFD+H GY T +H ++E GP HR +F P Sbjct: 146 PSISAASILAKVTRDRTLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAP 205 Query: 204 LRN 206 +R Sbjct: 206 VRE 208 >gi|284040939|ref|YP_003390869.1| ribonuclease H [Spirosoma linguale DSM 74] gi|283820232|gb|ADB42070.1| Ribonuclease H [Spirosoma linguale DSM 74] Length = 191 Score = 237 bits (605), Expect = 8e-61, Method: Composition-based stats. Identities = 81/179 (45%), Positives = 114/179 (63%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DEVGRG LAGPVV AA+IL + +NDSK++SH++RE L + I AI +++ Sbjct: 13 AGLDEVGRGCLAGPVVAAAVILPKDYTHPILNDSKQLSHRQRELLKQDIERDAIAWAVAE 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 SH+ ID+ NI KA+ A++ AV+ L V P L+DG +IKGD+ LS Sbjct: 73 VSHEDIDRINILKASFLAMHRAVDALTVKPEHLLVDGNRFVPYPMTPHTCIIKGDAHYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAAS++AK RD LM ++P YG+ +VGYPT H+ I++ GP+ HR++FR L Sbjct: 133 IAAASVLAKTYRDDLMAQLGLEFPAYGWAQNVGYPTPIHRAAIRQFGPTKYHRMSFRLL 191 >gi|307610074|emb|CBW99613.1| hypothetical protein LPW_13821 [Legionella pneumophila 130b] Length = 191 Score = 237 bits (605), Expect = 8e-61, Method: Composition-based stats. Identities = 81/182 (44%), Positives = 109/182 (59%), Gaps = 4/182 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DEVGRG LAG VV AA+IL G+ DSKK+S K+R L +I A+ + Sbjct: 10 AGVDEVGRGPLAGAVVTAAVILKK--PIDGLTDSKKLSPKQRNLLAIRIKEEALAFAYGR 67 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A + ID+ NIH ATL A+ AVE L + P + L+DG P+ L A+++GDS+ Sbjct: 68 AEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVLVDGAFTPQ-LNIPCKAIVQGDSLIPE 126 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AKV RD M K YP YGF H GY T H++ + GP IHR ++ P+ Sbjct: 127 ISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYSPVA 186 Query: 206 NL 207 +L Sbjct: 187 DL 188 >gi|167000564|ref|ZP_02266375.1| ribonuclease HII [Burkholderia mallei PRL-20] gi|243063495|gb|EES45681.1| ribonuclease HII [Burkholderia mallei PRL-20] Length = 214 Score = 237 bits (605), Expect = 8e-61, Method: Composition-based stats. Identities = 88/183 (48%), Positives = 124/183 (67%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 V G+DE GRG LAGPVV AA++LDP G++DSK +S KKRE L+++I + A+ S+ Sbjct: 27 IVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIAAYALAYSV 86 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS + ID NI AT+ A+ AVE L V+P A IDG P L ++ A++ GD++ Sbjct: 87 ASASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM-LAIRSEAIVGGDALV 145 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+++P YGFD+H GY T +H ++E GP HR +F P Sbjct: 146 PSISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAP 205 Query: 204 LRN 206 +R Sbjct: 206 VRE 208 >gi|24373211|ref|NP_717254.1| ribonuclease HII [Shewanella oneidensis MR-1] gi|39932406|sp|Q8EGG1|RNH2_SHEON RecName: Full=Ribonuclease HII; Short=RNase HII gi|24347435|gb|AAN54698.1|AE015610_2 ribonuclease HII [Shewanella oneidensis MR-1] Length = 209 Score = 237 bits (605), Expect = 8e-61, Method: Composition-based stats. Identities = 87/188 (46%), Positives = 116/188 (61%), Gaps = 5/188 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDPN G+NDSKK++ K+RE L+++I A+ + Sbjct: 19 LVAGVDEVGRGPLVGDVVTAAVILDPNRPILGLNDSKKLTEKRREALFDEICEKALSFHV 78 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP----EDLPCQAFAVIKG 139 AS ID+ NI AT+ A+ AV L++ P L+DG P + L + ++IKG Sbjct: 79 GRASPAEIDELNILHATMLAMQRAVSGLKLTPALVLVDGNRSPAFTHQGLSLASHSIIKG 138 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D + SI+AASIIAKVTRDR M YP YGF H GYPT H + I E G +R Sbjct: 139 DGLIASISAASIIAKVTRDREMDALDAAYPQYGFAKHKGYPTKAHFEAIAEHGVFDQYRK 198 Query: 200 TFRPLRNL 207 +F+P++ L Sbjct: 199 SFKPVKAL 206 >gi|256831070|ref|YP_003159798.1| Ribonuclease H [Desulfomicrobium baculatum DSM 4028] gi|256580246|gb|ACU91382.1| Ribonuclease H [Desulfomicrobium baculatum DSM 4028] Length = 207 Score = 237 bits (605), Expect = 9e-61, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 107/180 (59%), Gaps = 4/180 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG LAGPVV A+IL P+ G+ DSKK+S ++R L + I + A+ ++ Sbjct: 16 AGVDEAGRGCLAGPVVAGAVILPPDFDLPGLTDSKKLSSRRRVVLAQAIKAQAVSWALGF 75 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPEDLPCQAFAVIKGDSISL 144 + ID+ NI +A+L A+ AVE L+V P L+DG P LP V+ GD++ Sbjct: 76 SWPGEIDRINILQASLAAMARAVEALRVSPGLVLVDGNQRFPSSLP--QKTVVGGDALHP 133 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AK RD L+ ++YP YG H GY T H ++ GPS HR++FR + Sbjct: 134 CISAASILAKTFRDDLLLCMDQRYPGYGLAVHKGYGTKAHLDALRRLGPSPAHRVSFRGV 193 >gi|54294259|ref|YP_126674.1| hypothetical protein lpl1324 [Legionella pneumophila str. Lens] gi|81368717|sp|Q5WWX5|RNH2_LEGPL RecName: Full=Ribonuclease HII; Short=RNase HII gi|53754091|emb|CAH15564.1| hypothetical protein lpl1324 [Legionella pneumophila str. Lens] Length = 191 Score = 237 bits (605), Expect = 9e-61, Method: Composition-based stats. Identities = 81/182 (44%), Positives = 109/182 (59%), Gaps = 4/182 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DEVGRG LAG VV AA+IL G+ DSKK+S K+R L +I A+ + Sbjct: 10 AGVDEVGRGPLAGAVVTAAVILKK--PIDGLTDSKKLSPKQRNLLAIRIKEEALAFAYGR 67 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A + ID+ NIH ATL A+ AVE L + P + L+DG P+ L A+++GDS+ Sbjct: 68 AEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVLVDGAFTPQ-LNMPCKAIVQGDSLIPE 126 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AKV RD M K YP YGF H GY T H++ + GP IHR ++ P+ Sbjct: 127 ISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYSPVA 186 Query: 206 NL 207 +L Sbjct: 187 DL 188 >gi|46398977|gb|AAS92174.1| RNase H ribonuclease [Legionella pneumophila] Length = 191 Score = 237 bits (605), Expect = 9e-61, Method: Composition-based stats. Identities = 80/184 (43%), Positives = 110/184 (59%), Gaps = 4/184 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DEVGRG LAG VV AA+IL G+ DSKK+S K+R L +I A+ + Sbjct: 10 AGVDEVGRGPLAGAVVTAAVILKK--PIDGLTDSKKLSPKQRNLLAIRIKEEALAFAYGR 67 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A + ID+ NIH ATL A+ AVE L + P + ++DG P+ L A+++GDS+ Sbjct: 68 AEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVVVDGAFTPQ-LNIPCKAIVQGDSLIPE 126 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AKV RD M K YP YGF H GY T H++ + GP IHR ++ P+ Sbjct: 127 ISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYSPVA 186 Query: 206 NLSV 209 +L + Sbjct: 187 DLIL 190 >gi|315648159|ref|ZP_07901260.1| ribonuclease HII [Paenibacillus vortex V453] gi|315276805|gb|EFU40148.1| ribonuclease HII [Paenibacillus vortex V453] Length = 205 Score = 237 bits (605), Expect = 9e-61, Method: Composition-based stats. Identities = 87/198 (43%), Positives = 118/198 (59%), Gaps = 7/198 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +AGIDEVGRG L G VV AA+IL + GI+DSKK+S KKRE LY+ Sbjct: 7 YERDYWNH-YIHIAGIDEVGRGCLFGDVVAAAVILPEGLVIEGIDDSKKLSAKKRETLYD 65 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I A+ + + + ID+ NI +A A+ AVE L V P+ L+D + D+P Sbjct: 66 LIMEDALAVGVGLVDAETIDRINIKQAARLAMKMAVEQLAVTPQFLLVDAEKVDCDIP-- 123 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMR-IAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A+IKGD+ S SIAAASIIAKVTRDRL +YP+YG H GY T H++ ++ Sbjct: 124 QRAIIKGDANSQSIAAASIIAKVTRDRLCEREWEARYPEYGIAVHKGYATKFHREQLQLH 183 Query: 192 GPSCIHRLTFRPLRNLSV 209 GP+ +HR +F L+N+ + Sbjct: 184 GPTSMHRRSF--LKNMEI 199 >gi|110801760|ref|YP_698993.1| ribonuclease HII [Clostridium perfringens SM101] gi|123047313|sp|Q0SSB4|RNH2_CLOPS RecName: Full=Ribonuclease HII; Short=RNase HII gi|110682261|gb|ABG85631.1| ribonuclease HII [Clostridium perfringens SM101] Length = 272 Score = 237 bits (605), Expect = 9e-61, Method: Composition-based stats. Identities = 88/189 (46%), Positives = 113/189 (59%), Gaps = 7/189 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA 79 VAG+DEVGRG LAGP+V AA+ILD ++I INDSKK+S KREEL E I A Sbjct: 86 YKYVAGVDEVGRGPLAGPIVSAAVILDSSNLDDIILYINDSKKLSEHKREELSEIIKEKA 145 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + SIS + ID+ I A E L + P L DG + ++ + VIK Sbjct: 146 LSYSISMCDSKEIDEKGIGYCNNHVFIKACEGLNIKPDLVLSDGY-LIKNFNGENKHVIK 204 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD+ S IA ASIIAKV RD +M+ HKKYP Y F+ +VGY T H +KE GP+ IHR Sbjct: 205 GDTKSACIACASIIAKVYRDNIMKEYHKKYPQYDFEKNVGYGTKTHVDALKEVGPTEIHR 264 Query: 199 LTFRPLRNL 207 ++F L+N+ Sbjct: 265 MSF--LKNI 271 >gi|328544974|ref|YP_004305083.1| ribonuclease HII [polymorphum gilvum SL003B-26A1] gi|326414716|gb|ADZ71779.1| Ribonuclease HII [Polymorphum gilvum SL003B-26A1] Length = 219 Score = 237 bits (605), Expect = 9e-61, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 127/202 (62%), Gaps = 2/202 (0%) Query: 5 SIPERPHFE--LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62 +P P F+ LE +AG+DE GRG AGPVV AA++LD +P G++DSK+ Sbjct: 11 DLPFGPSFDATLEERHAALFGGRLAGVDEAGRGPWAGPVVTAAVVLDYRRLPAGLDDSKR 70 Query: 63 ISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 +S +RE LYE+I +SA ++++SA ID+ NI ATL A+ AV+ L + LIDG Sbjct: 71 LSEVQREALYEEICASACVAVASACPTSIDRDNIRTATLAAMTRAVDALALTAGIVLIDG 130 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 R +P L + A++KGD L++AAASI+AKVTRDR+MR+ P YGF +H GY Sbjct: 131 RDVPPGLAGRGQALVKGDQRCLAVAAASIVAKVTRDRMMRLLDGCCPGYGFSAHKGYGVP 190 Query: 183 KHQQVIKEKGPSCIHRLTFRPL 204 H Q + GPS HRL+F+P+ Sbjct: 191 AHAQALLRLGPSPHHRLSFKPV 212 >gi|168207943|ref|ZP_02633948.1| ribonuclease HII [Clostridium perfringens E str. JGS1987] gi|170660752|gb|EDT13435.1| ribonuclease HII [Clostridium perfringens E str. JGS1987] Length = 272 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 88/189 (46%), Positives = 113/189 (59%), Gaps = 7/189 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA 79 VAG+DEVGRG LAGP+V AA+ILD ++I INDSKK+S KREEL E I A Sbjct: 86 YKYVAGVDEVGRGPLAGPIVSAAVILDSSDLDDIILYINDSKKLSEHKREELSEIIKEKA 145 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + SIS + ID+ I A E L + P L DG + ++ + VIK Sbjct: 146 LSYSISMCDSKEIDEKGIGYCNNHVFIKACEGLSIKPDLVLSDGY-LIKNFNGENKHVIK 204 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD+ S IA ASIIAKV RD +M+ HKKYP Y F+ +VGY T H +KE GP+ IHR Sbjct: 205 GDTKSACIACASIIAKVYRDNIMKEYHKKYPQYDFEKNVGYGTKTHVDALKEVGPTEIHR 264 Query: 199 LTFRPLRNL 207 ++F L+N+ Sbjct: 265 MSF--LKNI 271 >gi|83647902|ref|YP_436337.1| ribonuclease HII [Hahella chejuensis KCTC 2396] gi|97182857|sp|Q2SBR2|RNH2_HAHCH RecName: Full=Ribonuclease HII; Short=RNase HII gi|83635945|gb|ABC31912.1| Ribonuclease HII [Hahella chejuensis KCTC 2396] Length = 204 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 88/185 (47%), Positives = 121/185 (65%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG LAGPVV AA+IL+P G+NDSKK+SH++R L ++I A+ + Sbjct: 17 QLVAGVDEVGRGPLAGPVVAAAVILNPEKPIEGLNDSKKLSHRQRVALSQEIREKALAWA 76 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 A+ + ID+ NI +A+L A+ AV LQV P ALIDG IP+ L A A++KGDS Sbjct: 77 TGWATVEEIDQINILQASLLAMQRAVAGLQVAPDLALIDGNKIPK-LDMPAEAIVKGDSK 135 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKV RD + +P YG H GYPTA+H ++E G + IHR +++ Sbjct: 136 VAAIAAASILAKVERDEELDRLDVIFPGYGLAGHKGYPTAQHLSALRELGVTDIHRRSYK 195 Query: 203 PLRNL 207 P++ L Sbjct: 196 PVQQL 200 >gi|293605073|ref|ZP_06687465.1| ribonuclease HII [Achromobacter piechaudii ATCC 43553] gi|292816476|gb|EFF75565.1| ribonuclease HII [Achromobacter piechaudii ATCC 43553] Length = 202 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 81/184 (44%), Positives = 110/184 (59%), Gaps = 2/184 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG LAG V AA+IL+P G+ DSK + RE L +I A+ I+S Sbjct: 18 AGVDEAGRGPLAGAVYAAAVILNPARPIDGLADSKVLKAATREALALEIQEHALAWCIAS 77 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS Q ID NI +AT+ A+ AV+ L V + AL+DG P+ L C VIKGD++ + Sbjct: 78 ASVQEIDTLNILRATMLAMQRAVQGLSVPAQLALVDGNQAPK-LACTVQTVIKGDALVPA 136 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AK RD + H YP Y F+ H GY TA H Q+++E GP HR +F P++ Sbjct: 137 ISAASILAKTARDADLVRLHGLYPQYAFNQHKGYGTALHLQMLREHGPCAEHRRSFAPIK 196 Query: 206 NLSV 209 + Sbjct: 197 AFGL 200 >gi|83816348|ref|YP_446472.1| ribonuclease HII [Salinibacter ruber DSM 13855] gi|97189257|sp|Q2S009|RNH2_SALRD RecName: Full=Ribonuclease HII; Short=RNase HII gi|83757742|gb|ABC45855.1| ribonuclease HII [Salinibacter ruber DSM 13855] Length = 200 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 79/199 (39%), Positives = 108/199 (54%), Gaps = 4/199 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + VAG+DE GRG LAGPVV AA+I+ P I DSK +S +R + Sbjct: 2 LSHERRLWADGYERVAGLDEAGRGCLAGPVVAAAVIMPPQVEITAIQDSKALSEGQRLDA 61 Query: 72 YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL- 129 I A+ SI+ S ID NI +A L+A+ A + P L+DG +L Sbjct: 62 RATIEDEAVAASIARCSPTEIDDRNILQAALEAMRRAASGCRPPPDFVLVDGNQWDRNLV 121 Query: 130 --PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 P V+KGD+ S SIAAASI+AK RD LMR H+ +P+Y + S+VGYPT +H Sbjct: 122 DAPWPHETVVKGDAKSQSIAAASILAKTERDALMRDLHEAHPEYDWASNVGYPTQQHYDA 181 Query: 188 IKEKGPSCIHRLTFRPLRN 206 ++E G + HR +F R+ Sbjct: 182 LREHGATPHHRQSFTLFRD 200 >gi|298207692|ref|YP_003715871.1| putative ribonuclease HII [Croceibacter atlanticus HTCC2559] gi|83850329|gb|EAP88197.1| putative ribonuclease HII [Croceibacter atlanticus HTCC2559] Length = 199 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 101/179 (56%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRG LAGPV AA+IL + +NDSKK++HK+R+ L I + A+ S+ Sbjct: 13 CGTDEAGRGCLAGPVTAAAVILPQDFNNPVLNDSKKLTHKQRDLLRPIIETEAVSFSVIH 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 IDK NI A++ + ++ +LQ P +DG +IKGD L+ Sbjct: 73 IDIDTIDKINILNASILGMQESIRSLQTKPEHIAVDGNRFKPCDDIPYKCIIKGDGKYLN 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IA+ASI+AK RD M H+++P Y + + GYPT +H++ I+ GPS HR +FR L Sbjct: 133 IASASILAKTYRDNYMEKIHEEFPMYNWKQNKGYPTKEHREAIRTHGPSKYHRKSFRLL 191 >gi|30249669|ref|NP_841739.1| ribonuclease HII and HIII [Nitrosomonas europaea ATCC 19718] gi|39932358|sp|Q82U06|RNH2_NITEU RecName: Full=Ribonuclease HII; Short=RNase HII gi|30180706|emb|CAD85618.1| Ribonuclease HII and HIII [Nitrosomonas europaea ATCC 19718] Length = 217 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 82/187 (43%), Positives = 116/187 (62%), Gaps = 3/187 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 ++ + G+DE GRG LAGPV A ++LDP ++ G+ DSK++S KKR L ++I Sbjct: 12 YAQDGKVIYGVDEAGRGPLAGPVYAACVVLDPADVIEGLADSKQLSEKKRISLADQIKQR 71 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-ALIDGRSIPEDLPCQAFAV 136 A +I+SAS + ID+ NI +A+L A+ AV +L+ I + L+DG P L C+ V Sbjct: 72 ARAWAIASASVEEIDRLNILQASLLAMQRAVVSLRPISNALVLVDGNHAPR-LDCEVQTV 130 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 I+GDS+ I+AASI+AK RD M H+ YP YGFD H GYPT H + I+ G + I Sbjct: 131 IRGDSLVAEISAASILAKTARDIEMLRLHEAYPVYGFDRHKGYPTKAHLEAIRLHGITDI 190 Query: 197 HRLTFRP 203 HR +F P Sbjct: 191 HRRSFAP 197 >gi|254828636|ref|ZP_05233323.1| rnhB [Listeria monocytogenes FSL N3-165] gi|258601035|gb|EEW14360.1| rnhB [Listeria monocytogenes FSL N3-165] Length = 261 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 88/195 (45%), Positives = 120/195 (61%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ L+ Sbjct: 60 QYETDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 EKI AI I + H ID+ NI++AT A+ A+ L P LID P Sbjct: 120 EKIKKEAIAIGVGIIEHDVIDQVNIYEATKLAMCEALNQLTPEPDFVLIDAM--PLRYTE 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM + +KYP Y F +++GY T KH + Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRLMLMYDEKYPGYDFANNMGYGTKKHLLGLDTI 237 Query: 192 GPSCIHRLTFRPLRN 206 G IHR++F P++ Sbjct: 238 GICPIHRMSFSPVKE 252 >gi|168210661|ref|ZP_02636286.1| ribonuclease HII [Clostridium perfringens B str. ATCC 3626] gi|170711299|gb|EDT23481.1| ribonuclease HII [Clostridium perfringens B str. ATCC 3626] Length = 272 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 88/189 (46%), Positives = 113/189 (59%), Gaps = 7/189 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA 79 VAG+DEVGRG LAGP+V AA+ILD ++I INDSKK+S KREEL E I A Sbjct: 86 YKYVAGVDEVGRGPLAGPIVSAAVILDSSDLDDIILYINDSKKLSEHKREELSEIIKEKA 145 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + SIS + ID+ I A E L + P L DG + ++ + VIK Sbjct: 146 LSYSISMCDSKEIDEKGIGYCNNHVFIKACEGLSIKPDLVLSDGY-LIKNFNGENKHVIK 204 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD+ S IA ASIIAKV RD +M+ HKKYP Y F+ +VGY T H +KE GP+ IHR Sbjct: 205 GDTKSACIACASIIAKVYRDNIMKEYHKKYPQYDFEKNVGYGTKTHVDALKEVGPTEIHR 264 Query: 199 LTFRPLRNL 207 ++F L+N+ Sbjct: 265 MSF--LKNI 271 >gi|119713524|gb|ABL97577.1| ribonuclease [uncultured marine bacterium EB0_35D03] Length = 191 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 80/192 (41%), Positives = 107/192 (55%), Gaps = 11/192 (5%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + G+DE GRG L G V+ AA+ N G+ DSKK++ KKRE Y +I S+ Sbjct: 1 MIIIGVDEAGRGPLVGSVIAAAVAFPENFYLEGLTDSKKLTEKKRESFYSQIVQKCNWSV 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPR--------SALIDGRSIPEDLPCQAFA 135 AS ID+ NI +AT+ A+ AV NLQ+ L+DG P+ CQ A Sbjct: 61 GEASSIEIDQINILQATMLAMKRAVNNLQLELSISDKDDQFKVLVDGNQCPDVGNCQ--A 118 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 ++KGD I I+AAS+IAKVTRDR M+ YP YGF H GY T +H + + GP Sbjct: 119 IVKGDLIEPVISAASVIAKVTRDRQMKELDLNYPGYGFAKHKGYGTREHLDALNKFGPIK 178 Query: 196 -IHRLTFRPLRN 206 IHR +F P++N Sbjct: 179 GIHRASFAPIKN 190 >gi|253999106|ref|YP_003051169.1| Ribonuclease H [Methylovorus sp. SIP3-4] gi|253985785|gb|ACT50642.1| Ribonuclease H [Methylovorus sp. SIP3-4] Length = 188 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 78/184 (42%), Positives = 114/184 (61%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + G+DE GRG LAG V AA+IL+P G+ DSKK+S KKR+ L +I A+ +I Sbjct: 5 IICGVDEAGRGPLAGAVYAAAVILNPARPIPGLADSKKLSEKKRDALTLEIKQHALAWAI 64 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + ++ + ID NI +A+L A+ AVE L + P L+DG PE + A A++ GDS Sbjct: 65 AHSTVEEIDSINILQASLLAMRRAVEQLGIQPHKLLVDGLHCPE-VSMVAEAIVDGDSKV 123 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AK RD+ + ++YP YGF H GYPTA H ++ E G S +HR ++ P Sbjct: 124 EAISAASILAKTARDKELYALDQQYPHYGFAKHKGYPTAFHMAMLIEHGVSPVHRRSYAP 183 Query: 204 LRNL 207 ++ L Sbjct: 184 VKKL 187 >gi|168215356|ref|ZP_02640981.1| ribonuclease HII [Clostridium perfringens CPE str. F4969] gi|170713265|gb|EDT25447.1| ribonuclease HII [Clostridium perfringens CPE str. F4969] Length = 272 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 89/189 (47%), Positives = 114/189 (60%), Gaps = 7/189 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA 79 VAG+DEVGRG LAGP+V AA+ILD ++I INDSKK+S KREEL E I A Sbjct: 86 YKYVAGVDEVGRGPLAGPIVSAAVILDSSDLDDIILYINDSKKLSEHKREELSEIIKEKA 145 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + SIS + ID+ I D A E L + P L DG + ++ + VIK Sbjct: 146 LSYSISMCDSKEIDEKGIGYCNNDVFIKACEGLSIKPDLVLSDGY-LIKNFNGENKHVIK 204 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD+ S IA ASIIAKV RD +M+ HKKYP Y F+ +VGY T H +KE GP+ IHR Sbjct: 205 GDTKSACIACASIIAKVYRDNIMKKYHKKYPQYDFEKNVGYGTKTHVDALKEVGPTEIHR 264 Query: 199 LTFRPLRNL 207 ++F L+N+ Sbjct: 265 MSF--LKNI 271 >gi|298290630|ref|YP_003692569.1| ribonuclease H [Starkeya novella DSM 506] gi|296927141|gb|ADH87950.1| Ribonuclease H [Starkeya novella DSM 506] Length = 221 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 93/199 (46%), Positives = 124/199 (62%), Gaps = 1/199 (0%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 ++P F E + PVAG+DEVGRG LAGPVV A++LDP +P G++DSKK++ + Sbjct: 6 QKPDFSTERAAWKAGDVPVAGVDEVGRGPLAGPVVACAVVLDPKRVPKGLDDSKKLTAVQ 65 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 RE L+E I ++A +S++ A ID HNI +ATL A AV L PR L+DG P Sbjct: 66 REALFEVICATAEVSLAFAPPARIDGHNIRQATLWAQAKAVAGLPCTPRLVLVDGND-PP 124 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + C A+I GD + SIAAASI+AKVTRDRLM +P YGF+ H+GY T +HQQ Sbjct: 125 PIGCAVRAIIGGDGLVASIAAASIVAKVTRDRLMASLGLAHPGYGFERHMGYSTPEHQQA 184 Query: 188 IKEKGPSCIHRLTFRPLRN 206 + G HR +F P+R Sbjct: 185 LAALGACRHHRTSFAPVRE 203 >gi|189425513|ref|YP_001952690.1| ribonuclease HII [Geobacter lovleyi SZ] gi|189421772|gb|ACD96170.1| Ribonuclease H [Geobacter lovleyi SZ] Length = 208 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 91/208 (43%), Positives = 122/208 (58%), Gaps = 4/208 (1%) Query: 1 MFCNSIPERPH--FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN 58 M + PH + E R VAGIDE GRG LAGPV+ AA+IL+P+ G+N Sbjct: 1 MQDLLFEQPPHDLYHFERQARAAGYTFVAGIDEAGRGPLAGPVIAAAVILNPDAPVEGVN 60 Query: 59 DSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117 DSKK++ ++RE L+E I + A+ + + ID+ NI +AT A+ AV+ L P Sbjct: 61 DSKKLTEQRRERLFELIMARALAVGVGQVDAATIDQINILQATRRAMLAAVQALSASPDL 120 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 LIDG + P + +GDS S SIAAASIIAKVTRDR+M K YPDYGF H Sbjct: 121 LLIDGITTIAS-PLPQQTIKQGDSRSASIAAASIIAKVTRDRMMGAYDKLYPDYGFLRHK 179 Query: 178 GYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 GY +A H +++ GP IHR+TF ++ Sbjct: 180 GYGSAVHLAALRQHGPCPIHRMTFAGVK 207 >gi|315023047|gb|EFT36060.1| Ribonuclease HII [Riemerella anatipestifer RA-YM] Length = 194 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 81/185 (43%), Positives = 114/185 (61%), Gaps = 2/185 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 KN V G DE GRG L GPVV AA+ILD N INDSKK+S K R EL I ++ Sbjct: 7 WSKNYIEV-GCDEAGRGCLCGPVVAAAVILDENFEQNLINDSKKLSFKTRNELDLYIKNN 65 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A+ +I+ S +ID+HNI A++ A++ A++ L + P L+DG +I Sbjct: 66 ALDYAIAELSPAFIDEHNILNASIHAMHLALDKLAIRPELILVDGNRFKPYPFTPHECII 125 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGDS LSIAAASI+AK RD +M H++YP+YG++ + GY T +H++ + + GP+ H Sbjct: 126 KGDSKVLSIAAASILAKNYRDHIMIKLHEEYPEYGWNKNFGYATKQHREALNKLGPTIYH 185 Query: 198 RLTFR 202 R +FR Sbjct: 186 RKSFR 190 >gi|169342697|ref|ZP_02863738.1| ribonuclease HII [Clostridium perfringens C str. JGS1495] gi|169299203|gb|EDS81273.1| ribonuclease HII [Clostridium perfringens C str. JGS1495] Length = 272 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 87/189 (46%), Positives = 113/189 (59%), Gaps = 7/189 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA 79 VAG+DEVGRG LAGP+V AA+ILD ++I INDSKK+S KREEL E I A Sbjct: 86 YKYVAGVDEVGRGPLAGPIVSAAVILDSSNLDDIILYINDSKKLSEHKREELSEIIKEKA 145 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + SIS + ID+ I A E L + P L DG + ++ + VIK Sbjct: 146 LSYSISMCDSKEIDEKGIGYCNNHVFIKACEGLNIKPDLVLSDGY-LIKNFNGENKHVIK 204 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD+ S IA ASIIAKV RD +M+ HKKYP Y F+ +VGY T H +K+ GP+ IHR Sbjct: 205 GDTKSACIACASIIAKVYRDNIMKEYHKKYPQYDFEKNVGYGTKTHVDALKKVGPTEIHR 264 Query: 199 LTFRPLRNL 207 ++F L+N+ Sbjct: 265 MSF--LKNI 271 >gi|117928761|ref|YP_873312.1| ribonuclease H [Acidothermus cellulolyticus 11B] gi|189043529|sp|A0LV66|RNH2_ACIC1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|117649224|gb|ABK53326.1| Ribonuclease H [Acidothermus cellulolyticus 11B] Length = 307 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 83/198 (41%), Positives = 111/198 (56%), Gaps = 4/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKRE 69 + E + + PVAG+DE GRGA AGP+VVAA+IL D N G+ DSK+++ RE Sbjct: 32 YRYERRLARLGLEPVAGVDEAGRGACAGPLVVAAVILGSDRRNRIAGLADSKQLTPAARE 91 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +Y +I S A+ S+ +D+ +H A + + AV L V P L DG SI Sbjct: 92 SIYNEIISRALAWSVVVIPSSEVDELGVHAANITGMRRAVAGLAVRPAYVLTDGFSI-AG 150 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L AV KGD IAAAS++AKVTRDRLM H+K+P Y F +H GY TA H+ + Sbjct: 151 LNAPGLAVCKGDEAVACIAAASVVAKVTRDRLMVELHEKFPMYEFATHKGYVTAGHRAAL 210 Query: 189 KEKGPSCIHRLTFRPLRN 206 GP HR +F +R Sbjct: 211 ARHGPCPEHRRSFVTVRR 228 >gi|116621683|ref|YP_823839.1| RNase HII [Candidatus Solibacter usitatus Ellin6076] gi|122254551|sp|Q024M2|RNH2_SOLUE RecName: Full=Ribonuclease HII; Short=RNase HII gi|116224845|gb|ABJ83554.1| RNase HII [Candidatus Solibacter usitatus Ellin6076] Length = 228 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 81/193 (41%), Positives = 115/193 (59%), Gaps = 3/193 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 LE +R + VAG+DEVGRGAL G V A+IL G+NDSK++ ++RE L Sbjct: 16 LERELRARGFRAVAGVDEVGRGALFGAVFAGAVILSEERPIRGLNDSKQLDPERREVLAG 75 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I A+ SI++ ID NI++A+ A+ AV L P L+D +P + Sbjct: 76 RIRERAVAWSIAAVDASTIDSINIYQASRMAMRIAVSRLSPAPDFLLVDA--VPLEFAVP 133 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A+IKGD +IAAASI+AKV RD MR+ K +P+YG SH GY T +H + I++ G Sbjct: 134 QRALIKGDERCHAIAAASILAKVARDECMRVWDKVFPEYGLASHKGYSTPEHYRAIEQYG 193 Query: 193 PSCIHRLTFRPLR 205 P+ +HRL+F P+R Sbjct: 194 PTPLHRLSFEPVR 206 >gi|299140089|ref|ZP_07033258.1| Ribonuclease H [Acidobacterium sp. MP5ACTX8] gi|298597935|gb|EFI54104.1| Ribonuclease H [Acidobacterium sp. MP5ACTX8] Length = 257 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 82/208 (39%), Positives = 119/208 (57%), Gaps = 13/208 (6%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF---GI 57 + C+ P E +R + +AG+DEVGRGAL GPVV AA+IL G+ Sbjct: 26 LICSDAP-------EQALRYQGFQSIAGVDEVGRGALFGPVVAAAVILPEKTGILARMGL 78 Query: 58 NDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116 DSK+++ + RE L KI + A+ ++I+ ID+ NI++A+ A+ AV+ L + P Sbjct: 79 KDSKQLTREDRERLDRKIRTMALAVAIAEVDAATIDRVNIYQASRMAMLMAVQQLGIAPD 138 Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 +ID I D PC + GD++ LSIAAAS++AKV RD L+R YP YG SH Sbjct: 139 HLIIDAMRI--DHPCPQTKLYYGDALCLSIAAASVVAKVYRDGLLREFDTVYPQYGLASH 196 Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 GY T +H++ + GP +HR TF P+ Sbjct: 197 KGYGTPEHRRALVAHGPCELHRHTFAPV 224 >gi|182625835|ref|ZP_02953601.1| ribonuclease HII [Clostridium perfringens D str. JGS1721] gi|177908869|gb|EDT71361.1| ribonuclease HII [Clostridium perfringens D str. JGS1721] Length = 272 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 88/189 (46%), Positives = 113/189 (59%), Gaps = 7/189 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA 79 VAG+DEVGRG LAGP+V AA+ILD ++I INDSKK+S KREEL E I A Sbjct: 86 YKYVAGVDEVGRGPLAGPIVSAAVILDSSDLDDIILYINDSKKLSEHKREELSEIIKEKA 145 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + SIS + ID+ I A E L + P L DG + ++ + VIK Sbjct: 146 LSYSISMCDSKEIDEKGIGYCNNHVFIKACEGLNIKPDLVLSDGY-LIKNFNGENKHVIK 204 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD+ S IA ASIIAKV RD +M+ HKKYP Y F+ +VGY T H +KE GP+ IHR Sbjct: 205 GDTKSACIACASIIAKVYRDNIMKEYHKKYPQYDFEKNVGYGTKTHVDALKEVGPTEIHR 264 Query: 199 LTFRPLRNL 207 ++F L+N+ Sbjct: 265 MSF--LKNI 271 >gi|294508407|ref|YP_003572465.1| Ribonuclease HII [Salinibacter ruber M8] gi|294344735|emb|CBH25513.1| Ribonuclease HII [Salinibacter ruber M8] Length = 200 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 79/199 (39%), Positives = 108/199 (54%), Gaps = 4/199 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + VAG+DE GRG LAGPVV AA+I+ P I DSK +S +R + Sbjct: 2 LSHERRLWADGYERVAGLDEAGRGCLAGPVVAAAVIMPPQVEITAIQDSKALSEGQRLDA 61 Query: 72 YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL- 129 I A+ SI+ S ID NI +A L+A+ A + P L+DG +L Sbjct: 62 RATIEDEAVAASIARCSPTEIDDCNILQAALEAMRRAASGCRPPPDFVLVDGNQWDRNLV 121 Query: 130 --PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 P V+KGD+ S SIAAASI+AK RD LMR H+ +P+Y + S+VGYPT +H Sbjct: 122 DAPWPHETVVKGDAKSQSIAAASILAKTERDALMRDLHEAHPEYDWASNVGYPTQQHYDA 181 Query: 188 IKEKGPSCIHRLTFRPLRN 206 ++E G + HR +F R+ Sbjct: 182 LREHGATPHHRQSFTLFRD 200 >gi|304440378|ref|ZP_07400267.1| ribonuclease HII [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371130|gb|EFM24747.1| ribonuclease HII [Peptoniphilus duerdenii ATCC BAA-1640] Length = 203 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 90/203 (44%), Positives = 120/203 (59%), Gaps = 12/203 (5%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E+E +K + V GIDEVGRG L G VV AA+I+ IP G+NDSKK++ +R ELY Sbjct: 3 EIEKNYYDKGLDLVCGIDEVGRGCLFGDVVAAAVIMPKTRIP-GVNDSKKLTELRRAELY 61 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL------QVIPRSALIDGRSI 125 +KI SS + I IDK NI AT A+ AV+NL +V P LID + Sbjct: 62 DKILSSCVAYGIGIMDSVTIDKINIKMATHLAMLLAVQNLRAKDGSKVDPNVLLIDAEHL 121 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 D+P +++KGD SIA ASI+AKV RDRL K+YP Y + H GY T KH+ Sbjct: 122 ETDIP--QESIVKGDEKVYSIACASIVAKVYRDRLCEKWGKEYPGYEIEKHKGYGTKKHR 179 Query: 186 QVIKEKGPSCIHRLTFRPLRNLS 208 +++ EKGP+ HR +F L+N+ Sbjct: 180 EILLEKGPTPHHRKSF--LKNME 200 >gi|253581825|ref|ZP_04859049.1| ribonuclease HII [Fusobacterium varium ATCC 27725] gi|251836174|gb|EES64711.1| ribonuclease HII [Fusobacterium varium ATCC 27725] Length = 239 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 86/180 (47%), Positives = 111/180 (61%), Gaps = 4/180 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + G+DE GRG LAGPVV AA+ I D N+ INDSK++S KKRE+LY+ + I I Sbjct: 54 IIGVDEAGRGPLAGPVVAAAVKIKDYNSELDEINDSKQLSEKKREKLYDVVKEHFYIGIG 113 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPR---SALIDGRSIPEDLPCQAFAVIKGDS 141 A + ID+ NI AT A+ A+ENL+ L+DG + + VIKGD Sbjct: 114 VADSKEIDEINILNATFLAMRRALENLKKECSGEYLVLVDGNFKIREYKGRQEPVIKGDG 173 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SLSIAAASIIAKVTRDR+MR KYP YGF+ H GY T +H+ I++ G +HR +F Sbjct: 174 KSLSIAAASIIAKVTRDRIMREEAIKYPLYGFEKHKGYGTKQHRDAIEKYGVLEMHRKSF 233 >gi|258647683|ref|ZP_05735152.1| ribonuclease HII [Prevotella tannerae ATCC 51259] gi|260852512|gb|EEX72381.1| ribonuclease HII [Prevotella tannerae ATCC 51259] Length = 203 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 108/179 (60%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA++L +NDSK++S +R L E+I A+ S+ + Sbjct: 13 AGCDEAGRGCLAGSVYAAAVVLPEGYANARLNDSKQLSPTRRYHLREEILRDAVAWSVGT 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S ID+ NI A++ A++ A++ L+V P L+DG ++KGD+ LS Sbjct: 73 VSASEIDEINILNASILAMHRALDGLKVRPAFILVDGNRFKPYGSTPFATIVKGDAKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD MR H++YP YG+D + GYPT +H++ I++ G + HR +FR L Sbjct: 133 IAAASILAKTFRDDEMRRLHEQYPWYGWDHNAGYPTREHRRGIEQHGLTPYHRRSFRLL 191 >gi|261408005|ref|YP_003244246.1| Ribonuclease H [Paenibacillus sp. Y412MC10] gi|329924283|ref|ZP_08279438.1| ribonuclease HII [Paenibacillus sp. HGF5] gi|261284468|gb|ACX66439.1| Ribonuclease H [Paenibacillus sp. Y412MC10] gi|328940765|gb|EGG37080.1| ribonuclease HII [Paenibacillus sp. HGF5] Length = 205 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 85/198 (42%), Positives = 118/198 (59%), Gaps = 7/198 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + +AGIDEVGRG L G VV AA+I+ + GINDSKK+S KKRE LY+ Sbjct: 7 YEREYWSR-YIHIAGIDEVGRGCLFGDVVAAAVIMPEGLVIEGINDSKKLSAKKRETLYD 65 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I A+ + + + ID+ NI +A A+ A+E L V P+ L+D + D+P Sbjct: 66 LIMEQALAVGVGLVDAETIDRINIKQAARLAMKKAIEQLAVPPQFLLVDAEKVDCDIP-- 123 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMR-IAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A+IKGD+ S SI AASIIAKVTRDRL +YP+YG H GY T H++ ++ Sbjct: 124 QRAIIKGDANSQSIGAASIIAKVTRDRLCEGEWEARYPEYGIAVHKGYATKFHREQLQLH 183 Query: 192 GPSCIHRLTFRPLRNLSV 209 GP+ +HR +F L+N+ + Sbjct: 184 GPTAMHRRSF--LKNMEI 199 >gi|110800212|ref|YP_696393.1| ribonuclease HII [Clostridium perfringens ATCC 13124] gi|123049754|sp|Q0TPP7|RNH2_CLOP1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|110674859|gb|ABG83846.1| ribonuclease HII [Clostridium perfringens ATCC 13124] Length = 272 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 88/189 (46%), Positives = 113/189 (59%), Gaps = 7/189 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA 79 VAG+DEVGRG LAGP+V AA+ILD ++I INDSKK+S KREEL E I A Sbjct: 86 YKYVAGVDEVGRGPLAGPIVSAAVILDSSDLDDIILYINDSKKLSEHKREELSEIIKEKA 145 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + SIS + ID+ I A E L + P L DG + ++ + VIK Sbjct: 146 LSYSISMCDSKEIDEKGIGYCNNHVFIKACEGLSIKPDLVLSDGY-LIKNFNGENKHVIK 204 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD+ S IA ASIIAKV RD +M+ HKKYP Y F+ +VGY T H +KE GP+ IHR Sbjct: 205 GDTKSACIACASIIAKVYRDNIMKEYHKKYPQYDFEKNVGYGTKTHVDALKEVGPTEIHR 264 Query: 199 LTFRPLRNL 207 ++F L+N+ Sbjct: 265 MSF--LKNI 271 >gi|260889965|ref|ZP_05901228.1| ribonuclease HII [Leptotrichia hofstadii F0254] gi|260860571|gb|EEX75071.1| ribonuclease HII [Leptotrichia hofstadii F0254] Length = 198 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 81/188 (43%), Positives = 113/188 (60%), Gaps = 3/188 (1%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKI 75 EK V G+DE GRG LAGPVV A+I+ + INDSKK++ KKRE L+E I Sbjct: 2 EFDEKYNKIVVGVDEAGRGPLAGPVVAGAVIVIQDFPELQEINDSKKLTEKKRERLFEAI 61 Query: 76 TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIPEDLPCQA 133 + I+ I AS + ID+ NI AT A+ A+ + + L+DG + + + Sbjct: 62 EKNCIVGIGIASEKEIDEMNILNATFLAMRRAINQVAEKSAFDIVLVDGNHLIREYEGEQ 121 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++KGDS SL+IA ASI+AKVTRDR++ K++P+Y F+ H GY T KH+Q++ EKG Sbjct: 122 ECIVKGDSKSLAIATASIVAKVTRDRILCEIAKEFPEYEFEKHKGYGTKKHRQILLEKGA 181 Query: 194 SCIHRLTF 201 HR TF Sbjct: 182 CKYHRKTF 189 >gi|118586886|ref|ZP_01544320.1| ribonuclease HII [Oenococcus oeni ATCC BAA-1163] gi|118432718|gb|EAV39450.1| ribonuclease HII [Oenococcus oeni ATCC BAA-1163] Length = 209 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 80/200 (40%), Positives = 120/200 (60%), Gaps = 3/200 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 R F+ E + ++ +AGIDEVGRG +AGPVV + IL N DSK+ + ++R Sbjct: 11 RIRFKFENELNDEGYQIIAGIDEVGRGCVAGPVVACSCILPANFNVSETYDSKRFNKRQR 70 Query: 69 EELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 L E+I S + + AS ID+ NI+++ A+ +V NL +P + LID ++ Sbjct: 71 FLLEEEIKKTSCLFAFGEASVTEIDRINIYQSARLAMKRSVMNLLQMPDALLIDAMAV-- 128 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 DL + +I GD +S SIAAASI+AK RDR+M +KYP+YGF+ +VGY T++ ++ Sbjct: 129 DLNLKQLKIIHGDQLSNSIAAASILAKCHRDRIMIKMAEKYPEYGFERNVGYLTSEAKKA 188 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 + E G + IHR TF P+ L Sbjct: 189 LLEYGITPIHRKTFAPISKL 208 >gi|289164797|ref|YP_003454935.1| ribonuclease HII [Legionella longbeachae NSW150] gi|288857970|emb|CBJ11830.1| putative ribonuclease HII [Legionella longbeachae NSW150] Length = 187 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 86/186 (46%), Positives = 110/186 (59%), Gaps = 4/186 (2%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81 + +AG+DEVGRG LAG VV AA+IL + G+ DSKK+S KKRE L I A+ Sbjct: 4 IMLIAGVDEVGRGPLAGAVVTAAVILK--SPIEGLADSKKLSAKKRELLSLLIKEQALAY 61 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 + A ID NIH ATL A+ AVE L V P L+DG IP+ L A+++GD Sbjct: 62 AYGRAEVDEIDALNIHHATLLAMQRAVEALPVKPDQVLVDGIHIPK-LNIPCKAIVQGDD 120 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + I+AASI+AKV RD M YP YGF H GYPT H++ +K GPS IHR +F Sbjct: 121 LIPEISAASILAKVFRDAEMEALDAIYPGYGFAGHKGYPTVAHREALKRLGPSQIHRKSF 180 Query: 202 RPLRNL 207 + +L Sbjct: 181 ALIGSL 186 >gi|172038236|ref|YP_001804737.1| ribonuclease HII [Cyanothece sp. ATCC 51142] gi|171699690|gb|ACB52671.1| ribonuclease HII [Cyanothece sp. ATCC 51142] Length = 202 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 80/194 (41%), Positives = 112/194 (57%), Gaps = 5/194 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKRE 69 + A + + +AG+DEVGRG L GPVV AA++ + I G+ DSK++S K+RE Sbjct: 7 MSAQLFSHSQILMAGVDEVGRGCLFGPVVAAAVVFNFTTIAQLQDIGVKDSKQLSVKRRE 66 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L +I + AI IS AS Q ID+ NI A+L A+ ++ L V P LIDG D Sbjct: 67 SLVTEIKNRAISYQISYASSQEIDRLNILNASLLAMKRSITKLSVTPELCLIDGNQKIPD 126 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L +I GD S IAAASI+AKV RD+L+ KYP Y +++ GY T KH+ + Sbjct: 127 LTIAQETIIGGDRTSPIIAAASILAKVWRDQLIVRLAAKYPHYDLENNKGYGTKKHRMGL 186 Query: 189 KEKGPSCIHRLTFR 202 ++ GP HR +F+ Sbjct: 187 QQYGPCFHHRRSFK 200 >gi|282859032|ref|ZP_06268168.1| ribonuclease HII [Prevotella bivia JCVIHMP010] gi|282588200|gb|EFB93369.1| ribonuclease HII [Prevotella bivia JCVIHMP010] Length = 201 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 99/179 (55%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAG V AA+IL N +NDSK++S K R L ++I A ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPENYHNDRLNDSKQLSAKARYALRKEIERDAMAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + IDK NI A++ A++ A++ L + P + ++DG +IKGD LS Sbjct: 73 VTPAEIDKINILNASILAMHRALDQLTLRPEAIIVDGNRFKAYHDIPHTTIIKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M K+YP Y + ++GYPT H+ I + G + HR ++ L Sbjct: 133 IAAASILAKTYRDDYMLKLAKEYPIYDWQHNMGYPTKAHRAAIAQYGITPYHRKSYNLL 191 >gi|270156755|ref|ZP_06185412.1| ribonuclease HII [Legionella longbeachae D-4968] gi|269988780|gb|EEZ95034.1| ribonuclease HII [Legionella longbeachae D-4968] Length = 183 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 86/185 (46%), Positives = 109/185 (58%), Gaps = 4/185 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DEVGRG LAG VV AA+IL + G+ DSKK+S KKRE L I A+ + Sbjct: 1 MLIAGVDEVGRGPLAGAVVTAAVILK--SPIEGLADSKKLSAKKRELLSLLIKEQALAYA 58 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 A ID NIH ATL A+ AVE L V P L+DG IP+ L A+++GD + Sbjct: 59 YGRAEVDEIDALNIHHATLLAMQRAVEALPVKPDQVLVDGIHIPK-LNIPCKAIVQGDDL 117 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKV RD M YP YGF H GYPT H++ +K GPS IHR +F Sbjct: 118 IPEISAASILAKVFRDAEMEALDAIYPGYGFAGHKGYPTVAHREALKRLGPSQIHRKSFA 177 Query: 203 PLRNL 207 + +L Sbjct: 178 LIGSL 182 >gi|325281756|ref|YP_004254298.1| Ribonuclease H [Odoribacter splanchnicus DSM 20712] gi|324313565|gb|ADY34118.1| Ribonuclease H [Odoribacter splanchnicus DSM 20712] Length = 199 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 104/179 (58%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL N +NDSK++S K+R L I A+ +++S Sbjct: 13 AGCDEAGRGCLAGPVFAAAVILPDNFSDELLNDSKQLSEKQRAGLRPVIEREALAWAVAS 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + IDK NI A++ A++ A++ L+V P ++DG + ++KGD +S Sbjct: 73 VDNHEIDKINILNASILAMHRALDQLKVRPGHIIVDGNRFKKYRDIPHLCIVKGDGKYMS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAAS++AK RD M H +P Y + + GYPT +H++ I++ G + HR +F L Sbjct: 133 IAAASVLAKTHRDEYMENLHALFPVYNWKKNKGYPTQEHRKGIEQAGVTEFHRTSFTLL 191 >gi|289434557|ref|YP_003464429.1| Ribonuclease HII [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170801|emb|CBH27343.1| rnhB [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 261 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 86/195 (44%), Positives = 117/195 (60%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KRE L+ Sbjct: 60 QYENDLYQQGYKCIAGVDEVGRGPLAGPVVAAAVILPEDFSVVGINDSKQLSELKRETLF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I AI + + H ID+ NI++AT A+ A++ L P LID P Sbjct: 120 ELIQQQAIAVGVGIIEHDVIDEVNIYEATKLAMRKALDELNPSPDFVLIDAM--PLKYTE 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM+ YP Y F +++GY T H + Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRLMKDYDVAYPGYDFVNNMGYGTKNHLNGLDTI 237 Query: 192 GPSCIHRLTFRPLRN 206 G IHRL+F P++ Sbjct: 238 GVCPIHRLSFAPVKE 252 >gi|158337229|ref|YP_001518404.1| ribonuclease HII [Acaryochloris marina MBIC11017] gi|189043525|sp|B0CAM1|RNH2_ACAM1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|158307470|gb|ABW29087.1| ribonuclease HII [Acaryochloris marina MBIC11017] Length = 198 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 80/185 (43%), Positives = 110/185 (59%), Gaps = 5/185 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI- 80 +AG+DEVGRGAL GPVV A +IL I G+ DSKK+S ++R L +I A Sbjct: 8 IAGVDEVGRGALFGPVVAATVILSDGAIEQLVAQGMTDSKKLSPQRRMILMNQIREVATG 67 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 + AS ID+ NI +A+L A+ AV L P+ L+DG +LP V+KGD Sbjct: 68 FRVGMASVYEIDRLNILQASLLAMRRAVLGLPSTPQLCLVDGNQRIPNLPVPQRTVVKGD 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 IAAASI+AKV RD+L+ ++YP Y S+ GY +AKH+Q ++E GP+ HRL+ Sbjct: 128 QSEPEIAAASILAKVWRDQLIVRLDQRYPGYDLASNKGYGSAKHRQALRELGPTRQHRLS 187 Query: 201 FRPLR 205 F P + Sbjct: 188 FAPCQ 192 >gi|305666398|ref|YP_003862685.1| ribonuclease HII [Maribacter sp. HTCC2170] gi|88708390|gb|EAR00627.1| ribonuclease HII [Maribacter sp. HTCC2170] Length = 198 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 70/185 (37%), Positives = 105/185 (56%), Gaps = 2/185 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII-SISS 85 G DE GRG LAGPV AA+IL + +NDSK++S KR L I SA+ ++ Sbjct: 12 VGTDEAGRGCLAGPVTAAALILPKDFKNVMLNDSKQLSENKRTILKPIIEQSAVCFGVAH 71 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + IDK NI A++ A++ A++ L + ++DG +IKGDS +S Sbjct: 72 IFPEEIDKINILNASILAMHKAIDQLTDDLKFIIVDGNRFKPYHDIPFECIIKGDSKYMS 131 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL- 204 IAAAS++AK RD M H+++P Y + + GYPT +H++ I+E G + HR +FR L Sbjct: 132 IAAASVLAKTYRDGYMEQLHEEFPMYNWKKNKGYPTKEHREAIREYGITKYHRKSFRQLP 191 Query: 205 RNLSV 209 L++ Sbjct: 192 EQLTL 196 >gi|18310688|ref|NP_562622.1| ribonuclease HII [Clostridium perfringens str. 13] gi|39932438|sp|Q8XJQ0|RNH2_CLOPE RecName: Full=Ribonuclease HII; Short=RNase HII gi|18145369|dbj|BAB81412.1| ribonuclease HII [Clostridium perfringens str. 13] Length = 272 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 87/189 (46%), Positives = 114/189 (60%), Gaps = 7/189 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA 79 VAG+DEVGRG LAGP+V AA+ILD ++I INDSKK+S KREEL E I A Sbjct: 86 YKYVAGVDEVGRGPLAGPIVSAAVILDSSDLDDIILYINDSKKLSEHKREELSEIIKEKA 145 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + SIS + ID+ I + A E L + P L DG + ++ + VIK Sbjct: 146 LSYSISMCDSKEIDEKGIGYCNNEVFIKACEGLSIKPDLVLSDGY-LIKNFNGENKHVIK 204 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD+ S IA ASIIAKV RD +M+ +KKYP Y F+ +VGY T H +KE GP+ IHR Sbjct: 205 GDTKSACIACASIIAKVYRDNIMKEYNKKYPQYDFEKNVGYGTKTHVDALKEVGPTEIHR 264 Query: 199 LTFRPLRNL 207 ++F L+N+ Sbjct: 265 MSF--LKNI 271 >gi|332711237|ref|ZP_08431170.1| RNase HII [Lyngbya majuscula 3L] gi|332350051|gb|EGJ29658.1| RNase HII [Lyngbya majuscula 3L] Length = 209 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 84/184 (45%), Positives = 117/184 (63%), Gaps = 5/184 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI 80 VAG+DEVGRGAL GPVV AA+IL + +P G+ DSKK+S K+R+ L E+I A+ Sbjct: 21 LVAGVDEVGRGALFGPVVAAAVILPVSVLPQLALAGVKDSKKLSRKRRQRLSEEIQGLAL 80 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 +I A+ ID+ NI +A+L A+ AV L+V P LIDG + DLP ++KG Sbjct: 81 DWTIGYATSAEIDQLNILQASLLAMKRAVLKLKVKPDICLIDGLQVLPDLPIAQRNLVKG 140 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D SL IAAASI+AKV RD L+ KY +Y +++GY T KH+ +++ GP +HR+ Sbjct: 141 DQRSLHIAAASIVAKVWRDDLIIRLAAKYSEYDLTANMGYGTKKHRLALQKYGPCRLHRM 200 Query: 200 TFRP 203 +F P Sbjct: 201 SFSP 204 >gi|315302908|ref|ZP_07873644.1| ribonuclease HII [Listeria ivanovii FSL F6-596] gi|313628722|gb|EFR97119.1| ribonuclease HII [Listeria ivanovii FSL F6-596] Length = 261 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 87/195 (44%), Positives = 121/195 (62%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + ++ + +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ L+ Sbjct: 60 QYETDLYKRGVKYIAGVDEVGRGPLAGPVVAAAVILPEHFSVIGINDSKQLSEAKRDILF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + IT A+ + I H ID+ NI++AT A+ A++ L P LID P Sbjct: 120 DLITEQALAVGIGIIEHDVIDQVNIYEATKLAMRKALDELNPKPDFVLIDAM--PLKYTE 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRD+LM+ K YP Y F S++GY T KH + Sbjct: 178 SELSLIKGDTKSISIAAASIIAKVTRDKLMKEYEKTYPGYDFASNMGYGTKKHLYGLDTI 237 Query: 192 GPSCIHRLTFRPLRN 206 G IHRL+F P++ Sbjct: 238 GICPIHRLSFSPVKE 252 >gi|303228938|ref|ZP_07315748.1| ribonuclease HII [Veillonella atypica ACS-134-V-Col7a] gi|302516352|gb|EFL58284.1| ribonuclease HII [Veillonella atypica ACS-134-V-Col7a] Length = 266 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 88/197 (44%), Positives = 134/197 (68%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ E M ++ ++ VAG+DEVGRG +AGPV VAA+IL P + G+NDSKK++ +KRE L Sbjct: 63 YDYEGMFYDEGLYHVAGVDEVGRGPIAGPVTVAAVILPPMTLISGLNDSKKLTEEKREAL 122 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I + A+ +S S S + ID+ NI++AT A+Y A+ L V + + D +P DL Sbjct: 123 YDIIMNEAVAVSCISYSPEKIDELNIYEATRQAMYEAIRTLDVPAEAVVADAMKLP-DLT 181 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGDS S +IAAASIIAKVTRDR M+ ++YP YGF H GY T H++ +++ Sbjct: 182 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDEEYPGYGFGIHKGYYTELHKEALEQ 241 Query: 191 KGPSCIHRLTFRPLRNL 207 +G + +HR +F P++++ Sbjct: 242 QGVTPLHRKSFEPIKSI 258 >gi|258593814|emb|CBE70155.1| Ribonuclease HII (RNase HII) [NC10 bacterium 'Dutch sediment'] Length = 195 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 81/194 (41%), Positives = 109/194 (56%), Gaps = 2/194 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 +E+ +R +AG+DE GRG+LAGPVV AA+IL P G++DSK +S ++RE L Sbjct: 1 MESCLRAAGYRLIAGVDEAGRGSLAGPVVAAAVILSPTCAIKGVDDSKALSAQQRERLDL 60 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I S A+ + + ID NI +AT+ A+ AVE L P LIDG P Sbjct: 61 AIMSEAVAVGFGVVQEEMIDALNILQATMLAMRRAVEALNPPPGFVLIDGDQSPRC-AIP 119 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 + GD + SI+AASI+AKV RDR+MR P YGF H GY T++H I G Sbjct: 120 CRLIPSGDRLCFSISAASILAKVARDRIMRAYDLALPHYGFGRHKGYGTSEHLSTIARFG 179 Query: 193 PSCIHRLTFRPLRN 206 S IHR +F+ +R Sbjct: 180 VSPIHRKSFKGVRE 193 >gi|225011416|ref|ZP_03701854.1| Ribonuclease H [Flavobacteria bacterium MS024-2A] gi|225003919|gb|EEG41891.1| Ribonuclease H [Flavobacteria bacterium MS024-2A] Length = 196 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 67/181 (37%), Positives = 105/181 (58%), Gaps = 1/181 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL N +NDSKK++ K+R L +I A+ +++ Sbjct: 12 AGTDEAGRGCLAGPVTAAAVILPKKNNLPLLNDSKKLTEKQRYALRPEIEKQALAYAVAH 71 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + ID+ NI A++ A++ A++ L +IP ++DG + V+KGD + Sbjct: 72 VYQEEIDEINILNASIKAMHLALKQLSLIPEFIVVDGNRFKQFEDIPHACVVKGDGKYQN 131 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 IAAAS++AK RD M+ ++P Y ++ + GYPT KH++ I G + HR++F+ L Sbjct: 132 IAAASVLAKTYRDDYMKKLDTEFPQYNWNKNKGYPTKKHREAIATFGITVHHRISFQLLS 191 Query: 206 N 206 Sbjct: 192 K 192 >gi|313201207|ref|YP_004039865.1| ribonuclease h [Methylovorus sp. MP688] gi|312440523|gb|ADQ84629.1| Ribonuclease H [Methylovorus sp. MP688] Length = 188 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 76/184 (41%), Positives = 114/184 (61%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + G+DE GRG LAG V AA+IL+P G+ DSKK+S KKR+ L +I A+ +I Sbjct: 5 IICGVDEAGRGPLAGAVYAAAVILNPARPIPGLADSKKLSEKKRDALTLEIKQHALAWAI 64 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + ++ + ID NI +A++ A+ AVE L + P L+DG P+ + A A++ GDS Sbjct: 65 AHSTVEEIDSINILQASMLAMRRAVEQLGIQPHKLLVDGLHCPQ-VSMVAEAIVDGDSKV 123 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AK RD+ + ++YP YGF H GYPTA H ++ E G S +HR ++ P Sbjct: 124 EAISAASILAKTARDKELYALDQQYPHYGFAKHKGYPTAFHMAMLIEHGVSPVHRRSYAP 183 Query: 204 LRNL 207 ++ L Sbjct: 184 VKKL 187 >gi|304409576|ref|ZP_07391196.1| Ribonuclease H [Shewanella baltica OS183] gi|307303934|ref|ZP_07583687.1| Ribonuclease H [Shewanella baltica BA175] gi|304352094|gb|EFM16492.1| Ribonuclease H [Shewanella baltica OS183] gi|306912832|gb|EFN43255.1| Ribonuclease H [Shewanella baltica BA175] Length = 210 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 118/199 (59%), Gaps = 6/199 (3%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 EA + + +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S K+RE L+++ Sbjct: 9 EADLLAFSTGLIAGVDEVGRGPLVGDVVTAAVILDPNKPISGLNDSKKLSEKRREALFDE 68 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-----ED 128 I A+ + AS ID+ NI AT+ A+ AV L + P L+DG P Sbjct: 69 ICDKALCYHVGRASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRSPIFVAHNG 128 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + ++IKGD + SI+AASIIAKVTRDR M + YP YGF H GYPT H + I Sbjct: 129 AGLTSHSIIKGDGLIASISAASIIAKVTRDREMDVLDAAYPQYGFAKHKGYPTKAHFEAI 188 Query: 189 KEKGPSCIHRLTFRPLRNL 207 E G +R +F+P++ L Sbjct: 189 AEHGVFDQYRKSFKPVKAL 207 >gi|73666806|ref|YP_302822.1| ribonuclease H [Ehrlichia canis str. Jake] gi|97182460|sp|Q3YST1|RNH2_EHRCJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|72393947|gb|AAZ68224.1| Ribonuclease H [Ehrlichia canis str. Jake] Length = 209 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 88/205 (42%), Positives = 120/205 (58%), Gaps = 6/205 (2%) Query: 9 RPHFELEAMVRE---KNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKI 63 P F +E + + K + G+DEVG G+LAGPVV AA N I + I DSKK+ Sbjct: 1 MPDFSIENEISKSINKKNCIIVGVDEVGYGSLAGPVVSAASFFLRHDNEIIYNIKDSKKL 60 Query: 64 SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 + KKR E+Y ITS SI A ID+HNI AT A+ A+ L ++DG Sbjct: 61 TPKKRIEVYNTITSIVKWSIGFADVYEIDQHNILNATHLAMQRALNGLNCDIDYVIVDGN 120 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P DLP A++ GD+IS+SIAAASIIAKVTRD+LM H +YP+Y ++ + GY T Sbjct: 121 KVP-DLPWNRKAIVDGDNISVSIAAASIIAKVTRDKLMETLHTQYPEYQWNKNKGYGTKH 179 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLS 208 H + + + G + HR TF PL ++ Sbjct: 180 HLESLYKYGKTIHHRNTFAPLPGIT 204 >gi|148358904|ref|YP_001250111.1| ribonuclease HII [Legionella pneumophila str. Corby] gi|296106952|ref|YP_003618652.1| ribonuclease HII [Legionella pneumophila 2300/99 Alcoy] gi|166226623|sp|A5IBL5|RNH2_LEGPC RecName: Full=Ribonuclease HII; Short=RNase HII gi|148280677|gb|ABQ54765.1| ribonuclease HII [Legionella pneumophila str. Corby] gi|295648853|gb|ADG24700.1| ribonuclease HII [Legionella pneumophila 2300/99 Alcoy] Length = 191 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 80/182 (43%), Positives = 109/182 (59%), Gaps = 4/182 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DEVGRG LAG VV AA+IL G+ DSKK+S K+R L +I A+ + Sbjct: 10 AGVDEVGRGPLAGAVVTAAVILKK--PIDGLTDSKKLSPKQRNLLAIRIKEEALAFAYGR 67 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A + ID+ NIH ATL A+ AVE L + P + ++DG P+ L A+++GDS+ Sbjct: 68 AEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVVVDGAFTPQ-LNIPCKAIVQGDSLVPE 126 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AKV RD M K YP YGF H GY T H++ + GP IHR ++ P+ Sbjct: 127 ISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCRIHRRSYSPVA 186 Query: 206 NL 207 +L Sbjct: 187 DL 188 >gi|154250014|ref|YP_001410839.1| ribonuclease HII [Fervidobacterium nodosum Rt17-B1] gi|154153950|gb|ABS61182.1| Ribonuclease H [Fervidobacterium nodosum Rt17-B1] Length = 245 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 80/189 (42%), Positives = 114/189 (60%), Gaps = 7/189 (3%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + + G+DE GRG + GPVV AA+ D GI DSKK+S KREELYEKI+ SA I Sbjct: 9 YSIIGVDEAGRGPIFGPVVAAAVFFDEGIYIEGITDSKKLSESKREELYEKISFSAKFGI 68 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPCQAFAVIK 138 A+ ID +NI AT A+ A+E L + +DG+ + + P + ++K Sbjct: 69 GIATPDEIDVYNILHATELAMNRALEILSYYIKIDEGKNIYVDGKDLRLNFPSK--CIVK 126 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD I+AASI+AKVTRDR+M+ K++P+Y H GY T++H +++K+ GP+ HR Sbjct: 127 GDEKVYQISAASILAKVTRDRIMKKFDKEFPEYNLSKHKGYATSEHIELLKKYGPTPYHR 186 Query: 199 LTFRPLRNL 207 LTF P+ L Sbjct: 187 LTFDPVFQL 195 >gi|54297282|ref|YP_123651.1| ribonuclease HII [Legionella pneumophila str. Paris] gi|81370660|sp|Q5X5J3|RNH2_LEGPA RecName: Full=Ribonuclease HII; Short=RNase HII gi|46398979|gb|AAS92175.1| RNase H ribonuclease [Legionella pneumophila] gi|46398981|gb|AAS92176.1| RNase H ribonuclease [Legionella pneumophila] gi|46398983|gb|AAS92177.1| RNase H ribonuclease [Legionella pneumophila] gi|46398985|gb|AAS92178.1| RNase H ribonuclease [Legionella pneumophila] gi|53751067|emb|CAH12478.1| hypothetical protein lpp1327 [Legionella pneumophila str. Paris] Length = 191 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 80/182 (43%), Positives = 109/182 (59%), Gaps = 4/182 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DEVGRG LAG VV AA+IL G+ DSKK+S K+R L +I A+ + Sbjct: 10 AGVDEVGRGPLAGAVVTAAVILKK--PIDGLTDSKKLSPKQRNLLAIRIKEEALAFAYGR 67 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A + ID+ NIH ATL A+ AVE L + P + ++DG P+ L A+++GDS+ Sbjct: 68 AEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVVVDGAFTPQ-LNIPCKAIVQGDSLIPE 126 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AKV RD M K YP YGF H GY T H++ + GP IHR ++ P+ Sbjct: 127 ISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYSPVA 186 Query: 206 NL 207 +L Sbjct: 187 DL 188 >gi|221133301|ref|ZP_03559606.1| ribonuclease H [Glaciecola sp. HTCC2999] Length = 189 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 78/182 (42%), Positives = 108/182 (59%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DEVGRG L G VV AA+ILDP +NDSKK+S KKRE LY I A+ + Sbjct: 1 MLIAGVDEVGRGPLVGDVVTAAVILDPARPIAALNDSKKLSEKKREALYPIIKEQALAWA 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I A+ ID+ NI +AT+ A+ AV L + P +DG +P D + A++KGD Sbjct: 61 IGRATPAEIDELNILRATILAMTRAVAGLGIRPDFVQVDGNRLP-DWDYASEAIVKGDGS 119 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKV RD+ M + K +P+YGF H GYPT H ++ +R +F+ Sbjct: 120 IACISAASILAKVVRDQEMVVLDKLHPEYGFAQHKGYPTKAHLACLEHLPILSCYRKSFK 179 Query: 203 PL 204 P+ Sbjct: 180 PV 181 >gi|116872706|ref|YP_849487.1| ribonuclease HII [Listeria welshimeri serovar 6b str. SLCC5334] gi|123458431|sp|A0AI76|RNH2_LISW6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|116741584|emb|CAK20708.1| ribonuclease HII [Listeria welshimeri serovar 6b str. SLCC5334] Length = 261 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 84/195 (43%), Positives = 117/195 (60%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + + +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ L+ Sbjct: 60 QYETNLSTQGFQYIAGVDEVGRGPLAGPVVAAAVILPADFSLLGINDSKQLSEAKRDMLF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I A+ I + H ID+ NI++AT A+ A++ L P L+D P Sbjct: 120 EIIKKEALSIGVGIIEHDMIDQVNIYEATKLAMSEALDQLNPAPDFILVDAM--PLKYSE 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDR+M+ YP Y F +++GY T KH + Sbjct: 178 SELSLIKGDTKSISIAAASIIAKVTRDRMMQHYDALYPGYDFANNMGYGTKKHLNGLDTI 237 Query: 192 GPSCIHRLTFRPLRN 206 G IHRL+F P++ Sbjct: 238 GVCPIHRLSFSPVKE 252 >gi|257468837|ref|ZP_05632931.1| ribonuclease HII [Fusobacterium ulcerans ATCC 49185] Length = 239 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 84/180 (46%), Positives = 109/180 (60%), Gaps = 4/180 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + G+DE GRG LAG VV AA+ I D N+ INDSK+IS KKRE LY+ + + + Sbjct: 54 IIGVDEAGRGPLAGSVVAAAVKIKDYNSDLDEINDSKQISEKKRERLYDVVKEHFYVGVG 113 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPR---SALIDGRSIPEDLPCQAFAVIKGDS 141 A + ID+ NI AT A+ A+ENL+ L+DG + + ++KGD Sbjct: 114 VADAKEIDEINILNATFLAMRRALENLKKECEGEYLVLVDGNFKIREYKGRQEPIVKGDG 173 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SLSIAAASIIAKVTRDR+MR KYP YGF+ H GY T +H+ I+E G IHR +F Sbjct: 174 KSLSIAAASIIAKVTRDRMMREEAVKYPLYGFEKHKGYGTKQHRDAIEEHGVLDIHRKSF 233 >gi|52841603|ref|YP_095402.1| ribonuclease HII [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81377550|sp|Q5ZVR7|RNH2_LEGPH RecName: Full=Ribonuclease HII; Short=RNase HII gi|46398969|gb|AAS92170.1| RNase H ribonuclease [Legionella pneumophila] gi|46398971|gb|AAS92171.1| RNase H ribonuclease [Legionella pneumophila] gi|52628714|gb|AAU27455.1| ribonuclease HII [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 191 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 80/182 (43%), Positives = 108/182 (59%), Gaps = 4/182 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DEVGRG LAG VV AA+IL G+ DSKK+S K+R L +I A+ + Sbjct: 10 AGVDEVGRGPLAGAVVTAAVILKK--PIDGLTDSKKLSPKQRNLLAIRIKEEALAFAYGR 67 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A + ID+ NIH ATL A+ AVE L + P + +DG P+ L A+++GDS+ Sbjct: 68 AEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVFVDGAFTPQ-LNIPCKAIVQGDSLIPE 126 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AKV RD M K YP YGF H GY T H++ + GP IHR ++ P+ Sbjct: 127 ISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYSPVA 186 Query: 206 NL 207 +L Sbjct: 187 DL 188 >gi|329733653|gb|EGG69981.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 21193] Length = 255 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E +++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKNYPEYGFEKNAGYGTKQHLL 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G HR +F P+++L Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254 >gi|16800380|ref|NP_470648.1| ribonuclease HII [Listeria innocua Clip11262] gi|38258629|sp|Q92C79|RNH2_LISIN RecName: Full=Ribonuclease HII; Short=RNase HII gi|16413785|emb|CAC96543.1| rnhB [Listeria innocua Clip11262] Length = 261 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 86/195 (44%), Positives = 118/195 (60%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK+++ KR+ L+ Sbjct: 60 RYETDLFKQGFQYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLNEAKRDILF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I AI I I H ID+ NI++AT A+ A+E L P LID P Sbjct: 120 DVIKEEAISIGIGIIDHDVIDQVNIYEATKIAMRTALEELNPAPDFVLIDAM--PLKYSE 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDR+M+ + YP Y F +++GY T KH + Sbjct: 178 SELSLIKGDTKSISIAAASIIAKVTRDRMMQQYDELYPGYDFANNMGYGTKKHLNGLDTI 237 Query: 192 GPSCIHRLTFRPLRN 206 G IHRL+F P++ Sbjct: 238 GICPIHRLSFSPVKE 252 >gi|160874612|ref|YP_001553928.1| ribonuclease HII [Shewanella baltica OS195] gi|189043658|sp|A9KUL9|RNH2_SHEB9 RecName: Full=Ribonuclease HII; Short=RNase HII gi|160860134|gb|ABX48668.1| Ribonuclease H [Shewanella baltica OS195] gi|315266853|gb|ADT93706.1| Ribonuclease H [Shewanella baltica OS678] Length = 210 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 118/199 (59%), Gaps = 6/199 (3%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 EA + + +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S K+RE L+++ Sbjct: 9 EADLLAFSTGLIAGVDEVGRGPLVGDVVTAAVILDPNKPISGLNDSKKLSEKRREALFDE 68 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-----ED 128 I A+ + AS ID+ NI AT+ A+ AV L + P L+DG P Sbjct: 69 ICDKALCYHVGRASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRSPIFVAHNG 128 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + ++IKGD + SI+AASIIAKVTRDR M + YP YGF H GYPT H + I Sbjct: 129 AGLTSHSIIKGDGLIASISAASIIAKVTRDREMDVLDAAYPQYGFAKHKGYPTKAHFEAI 188 Query: 189 KEKGPSCIHRLTFRPLRNL 207 E G +R +F+P++ L Sbjct: 189 AEHGVFDQYRKSFKPVKAL 207 >gi|323343781|ref|ZP_08084008.1| ribonuclease HII [Prevotella oralis ATCC 33269] gi|323095600|gb|EFZ38174.1| ribonuclease HII [Prevotella oralis ATCC 33269] Length = 212 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 69/181 (38%), Positives = 102/181 (56%), Gaps = 1/181 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAG V AA+IL + +NDSK++S K R EL +I A ++ Sbjct: 23 AGCDEAGRGCLAGSVYAAAVILPKDYDNPLLNDSKQLSVKLRYELRSQIERDATAWAVGI 82 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI KA+ A++ A++ L V P++ ++DG A++KGD + Sbjct: 83 VTPEEIDRINILKASFLAMHRALDQLAVRPQAVIVDGNLFIPYQDLPYTAIVKGDGKYQA 142 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 IAAASI+AK RD M +YP Y + + GYPT+KH+ I+ G + HR ++ L Sbjct: 143 IAAASILAKTYRDDYMEELALEYPQYDWQHNKGYPTSKHRAAIRLHGITPYHRKSYNLLG 202 Query: 206 N 206 N Sbjct: 203 N 203 >gi|119355888|ref|YP_910532.1| ribonuclease H [Chlorobium phaeobacteroides DSM 266] gi|166225181|sp|A1BCI1|RNH2_CHLPD RecName: Full=Ribonuclease HII; Short=RNase HII gi|119353237|gb|ABL64108.1| Ribonuclease H [Chlorobium phaeobacteroides DSM 266] Length = 205 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 78/202 (38%), Positives = 116/202 (57%), Gaps = 8/202 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-----FGINDSKKISHKK 67 + E + + ++GIDE GRG LAGPVV AA+I P ++DSKK+S Sbjct: 4 DYEYSLWPT-LSLISGIDEAGRGPLAGPVVAAAVIFPRWFRPRHAGLDKLDDSKKLSPNL 62 Query: 68 REELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE+L I + +A +++ ID+ NI +AT+ A+ +AV +L P L+DG Sbjct: 63 REQLAPTIKTFAAFWAVAVIEPDIIDRINIFQATMQAMNNAVASLHQPPELILVDGNRFM 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + P ++KGD+ SIAAAS++AK RD +M K+YP+YGF+ H GYPTA H + Sbjct: 123 PNAPIPYETIVKGDAKVFSIAAASVLAKTHRDAIMTAYGKEYPEYGFERHFGYPTASHIK 182 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 I+ G + +HR +FR L+ L Sbjct: 183 AIETFGRTPVHRKSFR-LKQLG 203 >gi|253733518|ref|ZP_04867683.1| ribonuclease HII [Staphylococcus aureus subsp. aureus TCH130] gi|253728572|gb|EES97301.1| ribonuclease HII [Staphylococcus aureus subsp. aureus TCH130] Length = 255 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E +++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAFAYGIATSEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G HR +F P+++L Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254 >gi|217964584|ref|YP_002350262.1| ribonuclease HII (RNase HII) [Listeria monocytogenes HCC23] gi|254807979|sp|B8DHN2|RNH2_LISMH RecName: Full=Ribonuclease HII; Short=RNase HII gi|217333854|gb|ACK39648.1| ribonuclease HII (RNase HII) [Listeria monocytogenes HCC23] gi|307570852|emb|CAR84031.1| rnhB [Listeria monocytogenes L99] Length = 261 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 88/195 (45%), Positives = 123/195 (63%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ LY Sbjct: 60 QYETDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPDDFSVVGINDSKQLSEAKRDALY 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I + AI + + H ID+ NI++AT A+ A++ LQ P LID P Sbjct: 120 ETIQTEAIAVGVGIIEHNVIDQVNIYEATKLAMRAALDQLQPEPDFVLIDAM--PLKYTE 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM++ +KYP Y F +++GY T KH + Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGTKKHLHGLDTI 237 Query: 192 GPSCIHRLTFRPLRN 206 G IHR++F P++ Sbjct: 238 GICPIHRISFAPVKE 252 >gi|116491049|ref|YP_810593.1| RNase HII [Oenococcus oeni PSU-1] gi|290890530|ref|ZP_06553605.1| hypothetical protein AWRIB429_0995 [Oenococcus oeni AWRIB429] gi|116091774|gb|ABJ56928.1| RNase HII [Oenococcus oeni PSU-1] gi|290479926|gb|EFD88575.1| hypothetical protein AWRIB429_0995 [Oenococcus oeni AWRIB429] Length = 209 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 80/200 (40%), Positives = 119/200 (59%), Gaps = 3/200 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 R F+ E + ++ +AGIDEVGRG +AGPVV + IL N DSK+ + ++R Sbjct: 11 RIRFKFENELNDEGYQIIAGIDEVGRGCVAGPVVACSCILPANFNVSETYDSKRFNKRQR 70 Query: 69 EELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 L E+I S + + AS ID NI+++ A+ +V NL +P + LID ++ Sbjct: 71 FLLEEEIKKTSCLFAFGEASVTEIDLINIYQSARLAMKRSVMNLLQMPDALLIDAMAV-- 128 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 DL + +I GD +S SIAAASI+AK RDR+M +KYP+YGF+ +VGY T++ ++ Sbjct: 129 DLNLKQLKIIHGDQLSNSIAAASILAKCHRDRIMIKMAEKYPEYGFERNVGYLTSEAKKA 188 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 + E G + IHR TF P+ L Sbjct: 189 LLEYGITPIHRKTFAPISKL 208 >gi|253996523|ref|YP_003048587.1| Ribonuclease H [Methylotenera mobilis JLW8] gi|253983202|gb|ACT48060.1| Ribonuclease H [Methylotenera mobilis JLW8] Length = 199 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 75/196 (38%), Positives = 114/196 (58%), Gaps = 12/196 (6%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81 M + G+DE GRG LAG V AA+ILDP G+ DSKK+S KKR+ L +I + A+ Sbjct: 1 MQLICGVDEAGRGPLAGAVYAAAVILDPAKPIHGLADSKKLSEKKRDALALEIKTHALAW 60 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR----------SALIDGRSIPEDLPC 131 ++ ++ + ID NI +A+L A+ A+E++Q +DG P+ + Sbjct: 61 GVAHSTVEEIDAINILQASLLAMQRAIESIQNSQAVQASLTNMQLLVQVDGNKCPK-ISL 119 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A++KGDS +I+AASI+AK RD + ++YP YGF H GYPTA H ++++ Sbjct: 120 PCEAIVKGDSKVQAISAASILAKTARDAALYELDQQYPMYGFAQHKGYPTAAHMALLRQH 179 Query: 192 GPSCIHRLTFRPLRNL 207 G S +HR ++ P+R L Sbjct: 180 GVSPVHRRSYAPVRAL 195 >gi|88812391|ref|ZP_01127641.1| Ribonuclease H [Nitrococcus mobilis Nb-231] gi|88790398|gb|EAR21515.1| Ribonuclease H [Nitrococcus mobilis Nb-231] Length = 218 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 87/200 (43%), Positives = 118/200 (59%), Gaps = 8/200 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 RP + A AGIDE GRG LAGPV+ AA+IL P GI DSK++S +R Sbjct: 2 RPTLDFPAPAA-----WTAGIDEAGRGPLAGPVLAAAVILPP-APIAGIADSKRLSAARR 55 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 EL I + A+ +I A + ID+ NI +A+L A+ AV L P AL+DGR P Sbjct: 56 SELATIIRNRAVGWAIGRAEVEEIDRLNILQASLLAMQRAVAVLTPKPSLALVDGRDKPR 115 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LPC+ A++ GD+ L+I AASI+AKV RD M + ++YP YG H GY T +H Sbjct: 116 -LPCRVEAIVGGDASVLAIGAASILAKVARDAEMIMLEQRYPGYGLARHKGYGTREHLAA 174 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 ++ GP+ IHR +F+P+R L Sbjct: 175 LRRLGPAPIHRRSFKPVRTL 194 >gi|271963370|ref|YP_003337566.1| ribonuclease H [Streptosporangium roseum DSM 43021] gi|270506545|gb|ACZ84823.1| Ribonuclease H [Streptosporangium roseum DSM 43021] Length = 228 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 75/194 (38%), Positives = 115/194 (59%), Gaps = 4/194 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + + + PVAG+DE GRGA AGP+VVAA++L G++DSK ++ +RE L Sbjct: 19 YGYERALARRGLGPVAGVDEAGRGACAGPLVVAAVVL--GRRIDGLSDSKLLTAARRESL 76 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YE+IT++A +S+ ID +H++ ++ + AV L L DG +P LP Sbjct: 77 YERITATAGAVSVVVIEPAEIDARGLHRSNIEGMRRAVARLSCDLGYVLTDGFPVP-GLP 135 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + V KGD ++ +AAASI+AKVTRDR+M ++P+YGF H GY T H++ ++ Sbjct: 136 VPSLGVWKGDQVAACVAAASIVAKVTRDRMMTALGDRHPEYGFAVHKGYGTVGHRRALET 195 Query: 191 KGPSCIHRLTFRPL 204 GP HR +F + Sbjct: 196 YGPCPAHRFSFATV 209 >gi|238022898|ref|ZP_04603324.1| hypothetical protein GCWU000324_02819 [Kingella oralis ATCC 51147] gi|237865706|gb|EEP66844.1| hypothetical protein GCWU000324_02819 [Kingella oralis ATCC 51147] Length = 200 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 73/182 (40%), Positives = 105/182 (57%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG+DE GRG L G V AA++L + G+ DSKK+S KR+ L +I A + +++S Sbjct: 11 AGVDEAGRGCLVGSVFAAAVMLPVHYDLPGLTDSKKLSEAKRDALAAQIKRQATVWAVAS 70 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A+ I + NI AT+ A+ AV L P IDG +P DL A AV+KGD+ + Sbjct: 71 ANPAEIQRLNILHATMLAMCRAVAALPRQPEKVWIDGNRVPPDLAVPAEAVVKGDAKIAA 130 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 ++AASI+AK RD M H+++P+YGF H GY TA H ++ G HR F P++ Sbjct: 131 VSAASILAKTARDAEMYALHERHPEYGFAQHKGYGTAAHLAALQRYGALPEHRADFAPVK 190 Query: 206 NL 207 + Sbjct: 191 QI 192 >gi|298694537|gb|ADI97759.1| ribonuclease HII [Staphylococcus aureus subsp. aureus ED133] Length = 255 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E +++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAYAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G HR +F P+++L Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254 >gi|295687798|ref|YP_003591491.1| Ribonuclease H [Caulobacter segnis ATCC 21756] gi|295429701|gb|ADG08873.1| Ribonuclease H [Caulobacter segnis ATCC 21756] Length = 209 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 91/186 (48%), Positives = 117/186 (62%), Gaps = 4/186 (2%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 PV G+DE GRG AGPV AA+ILDP+ +P G+NDSKK++ K R L E+I + AI Sbjct: 8 GQGPVCGVDEAGRGPWAGPVSAAAVILDPDRVPKGLNDSKKLTAKARAALEEEIKAVAIA 67 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPEDLPCQAFAVIKG 139 + AS + I ++NI AT A+ A+E L V P AL+DG P LPC+ V+KG Sbjct: 68 WCVDMASIEEIAEYNILHATGRAMCRAIEGLSVTPAIALVDGNYRFP--LPCEIKTVVKG 125 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS+S SIAAASI+AK RDRLM YP YGF SH GY H + + + GPS IHRL Sbjct: 126 DSLSCSIAAASILAKEARDRLMIEMDAVYPGYGFASHKGYHARIHVEGLVKLGPSPIHRL 185 Query: 200 TFRPLR 205 + P++ Sbjct: 186 GWAPVK 191 >gi|317504209|ref|ZP_07962202.1| ribonuclease HII [Prevotella salivae DSM 15606] gi|315664660|gb|EFV04334.1| ribonuclease HII [Prevotella salivae DSM 15606] Length = 220 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 74/193 (38%), Positives = 110/193 (56%), Gaps = 11/193 (5%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG VV AA+IL + + +NDSKK++ K+R L E+I A+ ++ Sbjct: 13 AGCDEAGRGCLAGNVVAAAVILPTDYVNPLLNDSKKLTAKQRYALREQIEHEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-----DLP-----CQAFA 135 A+ + ID NI A+ A++ A++ L++ P + ++DG LP Sbjct: 73 ATPEEIDNINILHASFLAMHRALDQLKLRPEAVIVDGNHFDPYVIGKGLPDEGKILPHTC 132 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 ++KGD LSIAAASI+AK RD M +++P YG++ + GYPT H Q I++ G Sbjct: 133 IVKGDGKYLSIAAASILAKTYRDDYMTEQAERFPFYGWEKNKGYPTKTHYQGIEKHGLCA 192 Query: 196 IHRLTFRPLRNLS 208 +HR +F NLS Sbjct: 193 LHRKSFNTHPNLS 205 >gi|302332850|gb|ADL23043.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus JKD6159] Length = 255 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E +++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAFAFGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G HR +F P+++L Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254 >gi|329912123|ref|ZP_08275683.1| Ribonuclease HII [Oxalobacteraceae bacterium IMCC9480] gi|327545705|gb|EGF30849.1| Ribonuclease HII [Oxalobacteraceae bacterium IMCC9480] Length = 188 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 80/182 (43%), Positives = 113/182 (62%), Gaps = 2/182 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G+DE GRG LAGPV AA+ILDP + G+ DSKK++ +R+ L +I + A+ SI+ Sbjct: 2 CGVDEAGRGPLAGPVFAAAVILDPAHPIAGLRDSKKLTEARRDALAIEIKAHALAWSIAE 61 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 SH ID NI +A+L A+ AV+ L P ALIDG P + ++ A++ GD + Sbjct: 62 CSHHEIDAINILQASLLAMKRAVDTLPTTPTLALIDGNRCPV-MTVRSIAIVGGDDKVDA 120 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AK RD + + H YPDY FD H GYPTA H + ++ G S +HR ++ P+R Sbjct: 121 ISAASILAKTARDAALVVLHADYPDYAFDRHKGYPTALHLERLRLHGVSPVHRRSYAPVR 180 Query: 206 NL 207 L Sbjct: 181 RL 182 >gi|322435742|ref|YP_004217954.1| Ribonuclease H [Acidobacterium sp. MP5ACTX9] gi|321163469|gb|ADW69174.1| Ribonuclease H [Acidobacterium sp. MP5ACTX9] Length = 247 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 85/211 (40%), Positives = 123/211 (58%), Gaps = 13/211 (6%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI---PFGI 57 + C+ P E +R + +AG+DEVGRGAL GPVV AA+IL G+ Sbjct: 17 LVCSDAP-------EQALRYRGARSIAGVDEVGRGALFGPVVAAAVILPAGLASLAKAGL 69 Query: 58 NDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116 DSK+++ ++RE L ++I AI +S++ + ID+ NI++AT A+ AVE L + P Sbjct: 70 TDSKQLTREERESLDKRIRRMAIAVSVAEIDAETIDRVNIYQATRLAMLQAVEGLAIAPD 129 Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 LID + PC + GD++SLSIAAAS++AKV RD LMR +P YG SH Sbjct: 130 HLLIDAMVVSH--PCPQTKLFYGDALSLSIAAASVVAKVHRDGLMRELDLVHPQYGLASH 187 Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 GY T +H++ + E G +HR +F P+R L Sbjct: 188 KGYATPEHRRALLEHGACALHRHSFAPVRAL 218 >gi|94986666|ref|YP_594599.1| ribonuclease HII [Lawsonia intracellularis PHE/MN1-00] gi|189043608|sp|Q1MRU8|RNH2_LAWIP RecName: Full=Ribonuclease HII; Short=RNase HII gi|94730915|emb|CAJ54278.1| ribonuclease HII [Lawsonia intracellularis PHE/MN1-00] Length = 224 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 85/211 (40%), Positives = 118/211 (55%), Gaps = 14/211 (6%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 S+P PH +V + AG+DEVGRG LAGPVV A+IL G+ DSK I Sbjct: 15 QSLPITPH----ELVYDNLSLLTAGLDEVGRGCLAGPVVAGAVILPDTISIDGLADSKTI 70 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S +R L +KI +AI I + ID+ NI +A+L A+ HA L+ P LIDG Sbjct: 71 SSNRRYILAKKIYETAISWGIGVVWPKEIDEINILQASLKAMAHAATVLKTFPELLLIDG 130 Query: 123 RS-IPEDLPCQ--------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 IP+ Q ++IKGD+ +I+AASIIAK RD LM K+YP Y F Sbjct: 131 NKAIPQKFFIQFGWNFLPIQHSIIKGDASIPAISAASIIAKTFRDTLMSKLDKRYPQYNF 190 Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 + GY + H++++++ GPS IHR+TF+ + Sbjct: 191 SKNKGYGSKTHREILQKIGPSPIHRMTFKGV 221 >gi|325106085|ref|YP_004275739.1| RNase HII [Pedobacter saltans DSM 12145] gi|324974933|gb|ADY53917.1| RNase HII [Pedobacter saltans DSM 12145] Length = 198 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 71/177 (40%), Positives = 100/177 (56%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL + + DSK+++ K R+ L +I A+ +++ Sbjct: 13 AGCDEAGRGCLAGPVFAAAVILPKDFFHPLLTDSKQLTDKDRKALRIEIEEKALAFAVAP 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 H+ ID+ NI A+ A++ A++ L + P +IDG VIKGD S Sbjct: 73 VDHEEIDRINILNASFLAMHKALDKLTIRPEFIIIDGNRFKSYNNIGHQCVIKGDGKYYS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD M H+++P Y ++ + GYPT KH+ I E G HR TFR Sbjct: 133 IAAASILAKTYRDDYMDALHEEFPLYDWNKNKGYPTTKHRLAILEHGICTYHRKTFR 189 >gi|15604075|ref|NP_220590.1| ribonuclease HII [Rickettsia prowazekii str. Madrid E] gi|7227932|sp|Q9ZDW3|RNH2_RICPR RecName: Full=Ribonuclease HII; Short=RNase HII gi|3860766|emb|CAA14667.1| RIBONUCLEASE HII (rnhB) [Rickettsia prowazekii] gi|292571798|gb|ADE29713.1| Ribonuclease HII [Rickettsia prowazekii Rp22] Length = 193 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 87/191 (45%), Positives = 119/191 (62%), Gaps = 5/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + VAG+DE GRG+L GPVV +A+I+D +I GI DSKK+S KRE L Sbjct: 6 LQYEKKYHN---YIVAGVDEAGRGSLVGPVVASAVIIDKADIIPGIKDSKKLSKNKREIL 62 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 YE+ITS+ + S + +H ID NI +AT A AV NL + P+ L+DG D+ Sbjct: 63 YERITSNYVWSTAIIAHTEIDNINILEATKKACAIAVANLSLKPQKILVDGNMKFSDI-- 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++I GD++SLSIAAASIIAKVTRDRLM ++P Y + + GY T +H + IK Sbjct: 121 RFISIINGDNLSLSIAAASIIAKVTRDRLMLELSAEFPQYLWHKNYGYGTREHIEAIKTH 180 Query: 192 GPSCIHRLTFR 202 G S HR +F+ Sbjct: 181 GLSSYHRRSFK 191 >gi|220905054|ref|YP_002480366.1| Ribonuclease H [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869353|gb|ACL49688.1| Ribonuclease H [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 230 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 76/193 (39%), Positives = 108/193 (55%), Gaps = 16/193 (8%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AGIDE GRG LAGPVV A+IL P G+ DSK + ++R L +I SA+ + Sbjct: 27 AGIDEAGRGCLAGPVVAGAVILPPEYDLPGLADSKACTARQRGLLAPRIKKSALAWGLGI 86 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED--------------LPC 131 ID+ NI +AT +A+ AV +L++ P+ L+DG + + LP Sbjct: 87 VWPDRIDRINILQATFEAMSMAVRHLRITPQILLVDGNKVIPEPALAPQWLRAHGDTLPL 146 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 Q A++ GD+ +I+AASI+AK RD LM K++P YGF H GY T +H + ++ Sbjct: 147 Q-RAIVGGDAAEPAISAASILAKTCRDTLMTSLDKRWPGYGFAIHKGYGTKEHYEALRRL 205 Query: 192 GPSCIHRLTFRPL 204 GP HRLTFR + Sbjct: 206 GPCPQHRLTFRGV 218 >gi|149277087|ref|ZP_01883229.1| ribonuclease HII [Pedobacter sp. BAL39] gi|149231964|gb|EDM37341.1| ribonuclease HII [Pedobacter sp. BAL39] Length = 203 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 74/177 (41%), Positives = 99/177 (55%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL P+ IP + DSKK++HK+R L I A+ +++S Sbjct: 13 AGCDEAGRGCLAGPVFAAAVILPPDFIPGELTDSKKLNHKQRAALRIIIEQEALAWAVAS 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 H+ IDK NI A+ A++ A+E L + P IDG ++KGD L+ Sbjct: 73 VDHEEIDKINILNASFLAMHRAIEQLSLKPEYLSIDGNRFKAYTGIPHSCIVKGDGKYLN 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD M +YP Y + + GYPT H++ G S HR TF Sbjct: 133 IAAASILAKTHRDEHMEQLALEYPVYQWAQNKGYPTIVHRKAALAHGLSPYHRKTFS 189 >gi|323441022|gb|EGA98729.1| ribonuclease HII [Staphylococcus aureus O11] gi|323442339|gb|EGA99969.1| ribonuclease HII [Staphylococcus aureus O46] Length = 255 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E +++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAFAFGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G HR +F P+++L Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254 >gi|282916494|ref|ZP_06324256.1| ribonuclease HII [Staphylococcus aureus subsp. aureus D139] gi|283770307|ref|ZP_06343199.1| ribonuclease HII [Staphylococcus aureus subsp. aureus H19] gi|282319934|gb|EFB50282.1| ribonuclease HII [Staphylococcus aureus subsp. aureus D139] gi|283460454|gb|EFC07544.1| ribonuclease HII [Staphylococcus aureus subsp. aureus H19] Length = 255 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E +++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G HR +F P+++L Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254 >gi|75907505|ref|YP_321801.1| ribonuclease HII [Anabaena variabilis ATCC 29413] gi|97182199|sp|Q3MDN0|RNH2_ANAVT RecName: Full=Ribonuclease HII; Short=RNase HII gi|75701230|gb|ABA20906.1| RNase HII [Anabaena variabilis ATCC 29413] Length = 225 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 83/187 (44%), Positives = 119/187 (63%), Gaps = 5/187 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 VAG+DEVGRGAL GPVV A++IL ++ P I DSKK+SH +R +L ++I++ A Sbjct: 35 GLVAGVDEVGRGALFGPVVAASVILPASSFPQLMTAEIKDSKKLSHSRRVQLAQQISTLA 94 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 I I A+ ID+ NI +ATL A+ +V+ L++ P L+DG +DLP ++K Sbjct: 95 IDWRIGYATTAEIDRINILQATLLAMRRSVKKLKLQPILCLVDGNQPVQDLPILQQTIVK 154 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD SL+IAAASI+AKV RD L++ KYP Y S+ GY + KH +++ G S +HR Sbjct: 155 GDERSLNIAAASIMAKVWRDDLIQRLSTKYPMYDLKSNKGYGSKKHLLALEKHGASPLHR 214 Query: 199 LTFRPLR 205 +FRP + Sbjct: 215 QSFRPCQ 221 >gi|91218354|ref|ZP_01255298.1| ribonuclease HII [Psychroflexus torquis ATCC 700755] gi|91183492|gb|EAS69891.1| ribonuclease HII [Psychroflexus torquis ATCC 700755] Length = 197 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 100/179 (55%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRG LAGPV AA+IL + + DSK +S KRE L + S++ I+ Sbjct: 13 CGTDEAGRGCLAGPVTAAAVILPKDFKNELLTDSKLLSSSKREFLEVILKESSVSFGIAH 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + ID+ NI A++ A++ +++ L P L+DG +IKGDS LS Sbjct: 73 IMMETIDEINILNASIKAMHASIQQLTPDPELILVDGNRFHTYPNIPHQCIIKGDSKFLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI AK RD M+ K++P YG+ + GYPT H++ I+E G + HR +F+ L Sbjct: 133 IAAASIFAKTARDAYMKTIDKEFPMYGWAQNKGYPTKAHRKAIREYGITKYHRQSFKLL 191 >gi|42523584|ref|NP_968964.1| ribonuclease HII (RNase HII) [Bdellovibrio bacteriovorus HD100] gi|81617170|sp|Q6MLA0|RNH2_BDEBA RecName: Full=Ribonuclease HII; Short=RNase HII gi|39575790|emb|CAE79957.1| ribonuclease HII (RNase HII) [Bdellovibrio bacteriovorus HD100] Length = 221 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 82/183 (44%), Positives = 110/183 (60%), Gaps = 1/183 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 P+ G+DEVGRG LAGPV AA+I + + + DSK +S K+REEL + I I+ I Sbjct: 37 PIIGVDEVGRGCLAGPVYAAAVIFKSDALNDLVTDSKLLSEKRREELADLILKEHIVGIG 96 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC-QAFAVIKGDSIS 143 SAS + ID+ NI A+L A+ AVE L V L+DG +L + ++KGD Sbjct: 97 SASVEEIDEINILNASLLAMKRAVEKLGVKSGHVLVDGNKKIPNLKGFEQSTIVKGDLRV 156 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDRLM+ KYP YGF+ H GY T H+Q I + GP HR +F Sbjct: 157 APISAASIVAKVTRDRLMKDLGVKYPHYGFEIHKGYSTPVHKQSIVDHGPCIAHRRSFAG 216 Query: 204 LRN 206 ++ Sbjct: 217 VKE 219 >gi|300767456|ref|ZP_07077368.1| ribonuclease HII [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180667|ref|YP_003924795.1| ribonuclease HII [Lactobacillus plantarum subsp. plantarum ST-III] gi|300495275|gb|EFK30431.1| ribonuclease HII [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046158|gb|ADN98701.1| ribonuclease HII [Lactobacillus plantarum subsp. plantarum ST-III] Length = 255 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 89/197 (45%), Positives = 119/197 (60%), Gaps = 3/197 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 H LE VAGIDEVGRG LAGPVV AA++LD + +NDSK+++ KKR Sbjct: 57 HMRLERDFWAHGGQYVAGIDEVGRGPLAGPVVTAAVVLDDHFDLLEVNDSKQLTAKKRAA 116 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L +I A+ + I A Q ID+ NI++AT A+ AV NL V P L+D +P + Sbjct: 117 LMPRILEEAVAVGIGVADAQQIDQLNIYEATRVAMAQAVRNLSVRPTRLLVDAMQVP--V 174 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P + +IKGD+ S SI+AASI+AKV RD LM + + YP Y F ++GY TAKH + Sbjct: 175 PIEQTRLIKGDAKSASISAASIVAKVVRDHLMTMYDQVYPGYDFADNMGYGTAKHLAGLA 234 Query: 190 EKGPSCIHRLTFRPLRN 206 G + IHR +F P+RN Sbjct: 235 SLGATPIHRQSFSPVRN 251 >gi|58696709|ref|ZP_00372256.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila simulans] gi|58698315|ref|ZP_00373232.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila ananassae] gi|58535188|gb|EAL59270.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila ananassae] gi|58537106|gb|EAL60222.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila simulans] Length = 180 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 80/179 (44%), Positives = 113/179 (63%), Gaps = 2/179 (1%) Query: 29 IDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87 +DEVGRG LAGPV+ AA++ D N I GINDSKK++ + R+ LYEKI S A I AS Sbjct: 1 MDEVGRGPLAGPVISAAVVFIDRNTIIDGINDSKKLTPQCRQVLYEKIISVAKFGIGMAS 60 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 + I+ +NI +AT ++ A+ +L + L+DG PE + Q +++ GD++S SIA Sbjct: 61 VEEINSYNILQATKLSMKRALIDLDLELDYVLVDGNQPPE-VKWQVKSIVNGDNLSTSIA 119 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 AASI+AKVTRDRLM+ H K+P+Y + + GY T +H I G + HR F P+ Sbjct: 120 AASIVAKVTRDRLMQELHNKHPEYNWYKNKGYGTKEHLNAIGLYGITEHHRRNFAPISR 178 >gi|57651813|ref|YP_186119.1| ribonuclease HII [Staphylococcus aureus subsp. aureus COL] gi|87160122|ref|YP_493834.1| ribonuclease HII [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194952|ref|YP_499752.1| ribonuclease HII [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221366|ref|YP_001332188.1| ribonuclease HII [Staphylococcus aureus subsp. aureus str. Newman] gi|161509410|ref|YP_001575069.1| ribonuclease HII [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142034|ref|ZP_03566527.1| ribonuclease HII [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452543|ref|ZP_05700549.1| ribonuclease HII [Staphylococcus aureus A5948] gi|262048142|ref|ZP_06021029.1| RNase HII [Staphylococcus aureus D30] gi|282920028|ref|ZP_06327757.1| ribonuclease HII [Staphylococcus aureus A9765] gi|284024237|ref|ZP_06378635.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 132] gi|294848239|ref|ZP_06788986.1| ribonuclease HII [Staphylococcus aureus A9754] gi|304381192|ref|ZP_07363845.1| ribonuclease HII [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|71153704|sp|Q5HGI8|RNH2_STAAC RecName: Full=Ribonuclease HII; Short=RNase HII gi|97189306|sp|Q2FHJ4|RNH2_STAA3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|122539702|sp|Q2FZ38|RNH2_STAA8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|172048860|sp|A6QGE4|RNH2_STAAE RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043665|sp|A8Z3S4|RNH2_STAAT RecName: Full=Ribonuclease HII; Short=RNase HII gi|57285999|gb|AAW38093.1| ribonuclease HII [Staphylococcus aureus subsp. aureus COL] gi|87126096|gb|ABD20610.1| ribonuclease HII [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202510|gb|ABD30320.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374166|dbj|BAF67426.1| ribonuclease HII [Staphylococcus aureus subsp. aureus str. Newman] gi|160368219|gb|ABX29190.1| ribonuclease H [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257859761|gb|EEV82603.1| ribonuclease HII [Staphylococcus aureus A5948] gi|259163708|gb|EEW48263.1| RNase HII [Staphylococcus aureus D30] gi|269940736|emb|CBI49117.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus TW20] gi|282594744|gb|EFB99728.1| ribonuclease HII [Staphylococcus aureus A9765] gi|294825039|gb|EFG41461.1| ribonuclease HII [Staphylococcus aureus A9754] gi|302751067|gb|ADL65244.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340175|gb|EFM06116.1| ribonuclease HII [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198484|gb|EFU28813.1| ribonuclease H [Staphylococcus aureus subsp. aureus CGS01] gi|320140940|gb|EFW32787.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MRSA131] gi|320144345|gb|EFW36111.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MRSA177] gi|329313913|gb|AEB88326.1| Ribonuclease HII [Staphylococcus aureus subsp. aureus T0131] gi|329728949|gb|EGG65363.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 21189] Length = 255 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E +++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G HR +F P+++L Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254 >gi|331009297|gb|EGH89353.1| ribonuclease HII [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 217 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 88/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+LY +I A+ I Sbjct: 13 LVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLYVEIQEKALCWFI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI AT+ A+ AVE L + P+ ALIDG P+ L + V+KGDS Sbjct: 73 ARAEVEEIDQLNILHATMLAMKRAVEGLSITPKLALIDGNRCPQ-LSVPSAPVVKGDSRV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P Sbjct: 132 AAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAP 191 Query: 204 LR 205 +R Sbjct: 192 VR 193 >gi|317486906|ref|ZP_07945716.1| ribonuclease HII [Bilophila wadsworthia 3_1_6] gi|316921781|gb|EFV43057.1| ribonuclease HII [Bilophila wadsworthia 3_1_6] Length = 237 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 80/191 (41%), Positives = 110/191 (57%), Gaps = 12/191 (6%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAGIDE GRG LAGPVV AA+IL + G+ DSK +S +R+ L +I + A+ + Sbjct: 34 VAGIDEAGRGCLAGPVVAAAVILPEGAVIPGLADSKVLSPTRRDGLAAEIGAVALAWGLG 93 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPEDL----------PCQA 133 ID+ NI +ATL A+ HA L+V P+ LIDG +IPE L + Sbjct: 94 VVWPPEIDRINILQATLKAMCHAASVLKVRPKGLLIDGNQTIPEPLFRQRAACWPSSPRQ 153 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +++ GD++ I+AASIIAK RD LM +YP YGF H GY + +H ++E GP Sbjct: 154 KSIVDGDALVPVISAASIIAKTFRDMLMDKLDHRYPGYGFAKHKGYGSKEHFAALRELGP 213 Query: 194 SCIHRLTFRPL 204 +HR TFR + Sbjct: 214 CPMHRKTFRGV 224 >gi|83721502|ref|YP_442565.1| ribonuclease HII [Burkholderia thailandensis E264] gi|167581492|ref|ZP_02374366.1| ribonuclease HII [Burkholderia thailandensis TXDOH] gi|167619603|ref|ZP_02388234.1| ribonuclease HII [Burkholderia thailandensis Bt4] gi|257138774|ref|ZP_05587036.1| ribonuclease HII [Burkholderia thailandensis E264] gi|97182353|sp|Q2SWY4|RNH2_BURTA RecName: Full=Ribonuclease HII; Short=RNase HII gi|83655327|gb|ABC39390.1| ribonuclease HII [Burkholderia thailandensis E264] Length = 214 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 87/183 (47%), Positives = 122/183 (66%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 V G+DE GRG LAGPVV AA++LDP G++DSK +S KKRE L+++I + A+ + Sbjct: 27 IVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAHALAYCV 86 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS + ID NI AT+ A+ AVE L V P A IDG P L ++ A++ GD++ Sbjct: 87 ASASVEEIDTLNILHATMLAMKRAVEGLAVRPTLAKIDGNRCPM-LAIRSEAIVGGDALV 145 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+++P YGFD+H GY T +H ++E GP HR +F P Sbjct: 146 PSISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFAP 205 Query: 204 LRN 206 +R Sbjct: 206 VRE 208 >gi|283470457|emb|CAQ49668.1| ribonuclease HII (RNase HII) [Staphylococcus aureus subsp. aureus ST398] Length = 255 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E +++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKNYPEYGFEKNAGYGTKQHLL 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G HR +F P+++L Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254 >gi|46907500|ref|YP_013889.1| ribonuclease HII [Listeria monocytogenes serotype 4b str. F2365] gi|226223876|ref|YP_002757983.1| ribonuclease H rnh [Listeria monocytogenes Clip81459] gi|254824666|ref|ZP_05229667.1| ribonuclease HII [Listeria monocytogenes FSL J1-194] gi|254852673|ref|ZP_05242021.1| ribonuclease HII [Listeria monocytogenes FSL R2-503] gi|254932410|ref|ZP_05265769.1| rnhB [Listeria monocytogenes HPB2262] gi|255520255|ref|ZP_05387492.1| ribonuclease HII [Listeria monocytogenes FSL J1-175] gi|300765309|ref|ZP_07075293.1| ribonuclease HII [Listeria monocytogenes FSL N1-017] gi|67461454|sp|Q720E8|RNH2_LISMF RecName: Full=Ribonuclease HII; Short=RNase HII gi|259494069|sp|C1L2I1|RNH2_LISMC RecName: Full=Ribonuclease HII; Short=RNase HII gi|46880768|gb|AAT04066.1| ribonuclease HII [Listeria monocytogenes serotype 4b str. F2365] gi|225876338|emb|CAS05047.1| Putative ribonuclease H rnh [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605991|gb|EEW18599.1| ribonuclease HII [Listeria monocytogenes FSL R2-503] gi|293583967|gb|EFF95999.1| rnhB [Listeria monocytogenes HPB2262] gi|293593905|gb|EFG01666.1| ribonuclease HII [Listeria monocytogenes FSL J1-194] gi|300513992|gb|EFK41055.1| ribonuclease HII [Listeria monocytogenes FSL N1-017] gi|328468563|gb|EGF39563.1| ribonuclease HII [Listeria monocytogenes 1816] gi|328475117|gb|EGF45901.1| ribonuclease HII [Listeria monocytogenes 220] gi|332311718|gb|EGJ24813.1| Ribonuclease HII [Listeria monocytogenes str. Scott A] Length = 261 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 87/195 (44%), Positives = 121/195 (62%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ L+ Sbjct: 60 QYETDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I AI I + H ID+ NI++AT A+ A++ L P LID P Sbjct: 120 ETIKKEAIAIGVGIIEHDVIDQVNIYEATKLAMREALDQLTPEPDFVLIDAM--PLRYTE 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM++ +KYP Y F +++GY T KH + Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGTKKHLLGLDTI 237 Query: 192 GPSCIHRLTFRPLRN 206 G IHR++F P++ Sbjct: 238 GICPIHRISFAPVKE 252 >gi|258423915|ref|ZP_05686800.1| ribonuclease HII [Staphylococcus aureus A9635] gi|257845944|gb|EEV69973.1| ribonuclease HII [Staphylococcus aureus A9635] Length = 255 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 85/201 (42%), Positives = 121/201 (60%), Gaps = 4/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E +++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 L ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H Sbjct: 176 NAL--TQVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G HR +F P+++L Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254 >gi|253731863|ref|ZP_04866028.1| ribonuclease HII [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724273|gb|EES93002.1| ribonuclease HII [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 255 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E +++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKNYPEYGFEKNAGYGTKQHLL 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G HR +F P+++L Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254 >gi|126173702|ref|YP_001049851.1| ribonuclease HII [Shewanella baltica OS155] gi|166226650|sp|A3D2L9|RNH2_SHEB5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|125996907|gb|ABN60982.1| RNase HII [Shewanella baltica OS155] Length = 210 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 118/199 (59%), Gaps = 6/199 (3%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 EA + + +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S K+RE L+++ Sbjct: 9 EADLLAFSTGLIAGVDEVGRGPLVGDVVTAAVILDPNKPISGLNDSKKLSEKRREALFDE 68 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-----ED 128 I A+ + AS ID+ NI AT+ A+ AV L + P L+DG P Sbjct: 69 ICDKALCYHVGRASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRSPIFVAHNG 128 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + ++IKGD + SI+AASIIAKVTRDR M + YP YGF H GYPT H + I Sbjct: 129 AELTSHSIIKGDGLIASISAASIIAKVTRDREMDVLDAAYPQYGFAKHKGYPTKAHFEAI 188 Query: 189 KEKGPSCIHRLTFRPLRNL 207 E G +R +F+P++ L Sbjct: 189 AEHGVFDQYRKSFKPVKAL 207 >gi|256383963|gb|ACU78533.1| ribonuclease HII [Mycoplasma mycoides subsp. capri str. GM12] gi|256384795|gb|ACU79364.1| ribonuclease HII [Mycoplasma mycoides subsp. capri str. GM12] gi|296455877|gb|ADH22112.1| ribonuclease HII [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 207 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 74/204 (36%), Positives = 122/204 (59%), Gaps = 2/204 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + +R F+ + + + N+ ++G DE GRG LAGP+VVA++IL + I DSKK++ Sbjct: 1 MIDRKLFD-DQIKLDHNITYLSGSDEAGRGCLAGPLVVASVILKADYFNPLIKDSKKLNP 59 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 K R+ L+++I + + I S + +D+ N +A+L + NL++ P LIDG Sbjct: 60 KTRQLLFDEIIKNCLDYQIIVISSKQVDELNPLQASLLGFKTTISNLKITPDLGLIDGNQ 119 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + ++IKGD S SIA +SI+AKVTRD+++ + YP+YGF SH GY T +H Sbjct: 120 NINLENIKTLSIIKGDDKSFSIACSSILAKVTRDKILDQYDQIYPNYGFKSHKGYCTKQH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRNLS 208 I++ G IHR +++P++ +S Sbjct: 180 LLAIQKYGILDIHRKSYKPIKKIS 203 >gi|15924234|ref|NP_371768.1| ribonuclease HII [Staphylococcus aureus subsp. aureus Mu50] gi|15926827|ref|NP_374360.1| ribonuclease HII [Staphylococcus aureus subsp. aureus N315] gi|148267735|ref|YP_001246678.1| ribonuclease HII [Staphylococcus aureus subsp. aureus JH9] gi|150393793|ref|YP_001316468.1| ribonuclease HII [Staphylococcus aureus subsp. aureus JH1] gi|156979565|ref|YP_001441824.1| ribonuclease HII [Staphylococcus aureus subsp. aureus Mu3] gi|255006031|ref|ZP_05144632.2| ribonuclease HII [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795700|ref|ZP_05644679.1| ribonuclease HII [Staphylococcus aureus A9781] gi|258415924|ref|ZP_05682194.1| ribonuclease HII [Staphylococcus aureus A9763] gi|258421686|ref|ZP_05684610.1| ribonuclease HII [Staphylococcus aureus A9719] gi|258434842|ref|ZP_05688916.1| ribonuclease HII [Staphylococcus aureus A9299] gi|258444582|ref|ZP_05692911.1| ribonuclease HII [Staphylococcus aureus A8115] gi|258447585|ref|ZP_05695729.1| ribonuclease HII [Staphylococcus aureus A6300] gi|258449427|ref|ZP_05697530.1| ribonuclease HII [Staphylococcus aureus A6224] gi|258454806|ref|ZP_05702770.1| ribonuclease HII [Staphylococcus aureus A5937] gi|269202860|ref|YP_003282129.1| ribonuclease HII [Staphylococcus aureus subsp. aureus ED98] gi|282892732|ref|ZP_06300967.1| ribonuclease HII [Staphylococcus aureus A8117] gi|282927586|ref|ZP_06335202.1| ribonuclease HII [Staphylococcus aureus A10102] gi|295406179|ref|ZP_06815986.1| ribonuclease HII [Staphylococcus aureus A8819] gi|296274801|ref|ZP_06857308.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MR1] gi|297244407|ref|ZP_06928290.1| ribonuclease HII [Staphylococcus aureus A8796] gi|54039252|sp|P66676|RNH2_STAAN RecName: Full=Ribonuclease HII; Short=RNase HII gi|54042175|sp|P66675|RNH2_STAAM RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226657|sp|A7X1L7|RNH2_STAA1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043663|sp|A6U163|RNH2_STAA2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043664|sp|A5ISC9|RNH2_STAA9 RecName: Full=Ribonuclease HII; Short=RNase HII gi|13701044|dbj|BAB42339.1| RNase HII [Staphylococcus aureus subsp. aureus N315] gi|14247014|dbj|BAB57406.1| RNase HII [Staphylococcus aureus subsp. aureus Mu50] gi|147740804|gb|ABQ49102.1| RNase HII [Staphylococcus aureus subsp. aureus JH9] gi|149946245|gb|ABR52181.1| Ribonuclease H [Staphylococcus aureus subsp. aureus JH1] gi|156721700|dbj|BAF78117.1| RNase HII [Staphylococcus aureus subsp. aureus Mu3] gi|257789672|gb|EEV28012.1| ribonuclease HII [Staphylococcus aureus A9781] gi|257839260|gb|EEV63734.1| ribonuclease HII [Staphylococcus aureus A9763] gi|257842372|gb|EEV66797.1| ribonuclease HII [Staphylococcus aureus A9719] gi|257849203|gb|EEV73185.1| ribonuclease HII [Staphylococcus aureus A9299] gi|257850075|gb|EEV74028.1| ribonuclease HII [Staphylococcus aureus A8115] gi|257853776|gb|EEV76735.1| ribonuclease HII [Staphylococcus aureus A6300] gi|257857415|gb|EEV80313.1| ribonuclease HII [Staphylococcus aureus A6224] gi|257863189|gb|EEV85953.1| ribonuclease HII [Staphylococcus aureus A5937] gi|262075150|gb|ACY11123.1| ribonuclease HII [Staphylococcus aureus subsp. aureus ED98] gi|282590589|gb|EFB95666.1| ribonuclease HII [Staphylococcus aureus A10102] gi|282764729|gb|EFC04854.1| ribonuclease HII [Staphylococcus aureus A8117] gi|285816926|gb|ADC37413.1| Ribonuclease HII [Staphylococcus aureus 04-02981] gi|294968767|gb|EFG44789.1| ribonuclease HII [Staphylococcus aureus A8819] gi|297178437|gb|EFH37683.1| ribonuclease HII [Staphylococcus aureus A8796] gi|312829638|emb|CBX34480.1| ribonuclease HII (RNase HII) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131038|gb|EFT87022.1| RNase HII [Staphylococcus aureus subsp. aureus CGS03] gi|329727171|gb|EGG63627.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 21172] Length = 255 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E +++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPITK 115 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G HR +F P+++L Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254 >gi|56750670|ref|YP_171371.1| ribonuclease HII [Synechococcus elongatus PCC 6301] gi|81299688|ref|YP_399896.1| ribonuclease HII [Synechococcus elongatus PCC 7942] gi|81596478|sp|Q5N4B8|RNH2_SYNP6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|97189413|sp|Q31PW0|RNH2_SYNE7 RecName: Full=Ribonuclease HII; Short=RNase HII gi|56685629|dbj|BAD78851.1| ribonuclease HII [Synechococcus elongatus PCC 6301] gi|81168569|gb|ABB56909.1| RNase HII [Synechococcus elongatus PCC 7942] Length = 215 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 80/189 (42%), Positives = 109/189 (57%), Gaps = 7/189 (3%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA 79 VAG+DEVGRG L GPVV AA+IL I G+ DSK++S ++R++LY I A Sbjct: 19 QTVAGVDEVGRGCLFGPVVTAAVILPETAIAPLQQAGVTDSKRLSQRQRQQLYPLICEVA 78 Query: 80 II-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + AS I++ NI +AT A+ A+ L LIDG L VI+ Sbjct: 79 LATGWGLASVAEIERWNILQATFLAMRRAIAKLDRPISRCLIDGNQQVPQLTYPQTTVIQ 138 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD ++IAAASI+AKV RDRL+ ++YP Y H GY TA+H+Q I + GP+ +HR Sbjct: 139 GDRHCITIAAASILAKVWRDRLIERLDERYPGYALGRHKGYGTAQHRQAILQLGPTPLHR 198 Query: 199 LTFRPLRNL 207 + F LR+L Sbjct: 199 IRF--LRSL 205 >gi|238019255|ref|ZP_04599681.1| hypothetical protein VEIDISOL_01119 [Veillonella dispar ATCC 17748] gi|237863954|gb|EEP65244.1| hypothetical protein VEIDISOL_01119 [Veillonella dispar ATCC 17748] Length = 265 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 88/197 (44%), Positives = 131/197 (66%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ E M ++ M+ VAG+DEVGRG +AGPV VAA+IL P + G+NDSKK++ +KRE L Sbjct: 63 YDYEGMFYDQGMYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKRETL 122 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ +S S + ID+ NI++AT A+Y A+ L V + + D +P DL Sbjct: 123 YDIIMKEAVAVSCISYGPEKIDELNIYEATRQAMYEAIRTLSVPAEAVVADAMKLP-DLT 181 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGDS S +IAAASIIAKVTRDR M+ +YP YGF H GY T H++ +++ Sbjct: 182 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDDEYPGYGFGIHKGYYTELHKEAVEQ 241 Query: 191 KGPSCIHRLTFRPLRNL 207 +G + +HR +F P++++ Sbjct: 242 QGVTPLHRKSFEPIKSI 258 >gi|28378510|ref|NP_785402.1| ribonuclease HII [Lactobacillus plantarum WCFS1] gi|38258518|sp|Q88W20|RNH2_LACPL RecName: Full=Ribonuclease HII; Short=RNase HII gi|28271346|emb|CAD64251.1| ribonuclease HII [Lactobacillus plantarum WCFS1] Length = 255 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 89/197 (45%), Positives = 119/197 (60%), Gaps = 3/197 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 H LE VAGIDEVGRG LAGPVV AA++LD + +NDSK+++ KKR Sbjct: 57 HMRLERDFWAHGGQYVAGIDEVGRGPLAGPVVTAAVVLDDHFDLLEVNDSKQLTAKKRAA 116 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L +I A+ + I A Q ID+ NI++AT A+ AV NL V P L+D +P + Sbjct: 117 LMPRILEEAVAVGIGVADAQQIDQLNIYEATRVAMAQAVRNLSVRPTRLLVDAMQVP--V 174 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P + +IKGD+ S SI+AASI+AKV RD LM + + YP Y F ++GY TAKH + Sbjct: 175 PIEQTRLIKGDAKSASISAASIVAKVVRDHLMTMYDQVYPGYDFADNMGYGTAKHLAGLA 234 Query: 190 EKGPSCIHRLTFRPLRN 206 G + IHR +F P+RN Sbjct: 235 SLGATPIHRQSFSPVRN 251 >gi|49483407|ref|YP_040631.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MRSA252] gi|257425298|ref|ZP_05601723.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 55/2053] gi|257427958|ref|ZP_05604356.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 65-1322] gi|257430591|ref|ZP_05606973.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 68-397] gi|257433352|ref|ZP_05609710.1| ribonuclease HII [Staphylococcus aureus subsp. aureus E1410] gi|257436194|ref|ZP_05612241.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M876] gi|282903799|ref|ZP_06311687.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C160] gi|282905562|ref|ZP_06313417.1| ribonuclease HII [Staphylococcus aureus subsp. aureus Btn1260] gi|282908537|ref|ZP_06316367.1| ribonuclease HII [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910816|ref|ZP_06318619.1| ribonuclease HII [Staphylococcus aureus subsp. aureus WBG10049] gi|282914021|ref|ZP_06321808.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M899] gi|282918943|ref|ZP_06326678.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C427] gi|282924066|ref|ZP_06331742.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C101] gi|283957987|ref|ZP_06375438.1| ribonuclease HII [Staphylococcus aureus subsp. aureus A017934/97] gi|293501052|ref|ZP_06666903.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 58-424] gi|293510014|ref|ZP_06668722.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M809] gi|293526601|ref|ZP_06671286.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M1015] gi|295427731|ref|ZP_06820363.1| ribonuclease HII [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591311|ref|ZP_06949949.1| ribonuclease H [Staphylococcus aureus subsp. aureus MN8] gi|56749568|sp|Q6GHJ1|RNH2_STAAR RecName: Full=Ribonuclease HII; Short=RNase HII gi|49241536|emb|CAG40222.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus MRSA252] gi|257271755|gb|EEV03893.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 55/2053] gi|257274799|gb|EEV06286.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 65-1322] gi|257278719|gb|EEV09338.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 68-397] gi|257281445|gb|EEV11582.1| ribonuclease HII [Staphylococcus aureus subsp. aureus E1410] gi|257284476|gb|EEV14596.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M876] gi|282314038|gb|EFB44430.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C101] gi|282316753|gb|EFB47127.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C427] gi|282322089|gb|EFB52413.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M899] gi|282325421|gb|EFB55730.1| ribonuclease HII [Staphylococcus aureus subsp. aureus WBG10049] gi|282327599|gb|EFB57882.1| ribonuclease HII [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330854|gb|EFB60368.1| ribonuclease HII [Staphylococcus aureus subsp. aureus Btn1260] gi|282595417|gb|EFC00381.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C160] gi|283790136|gb|EFC28953.1| ribonuclease HII [Staphylococcus aureus subsp. aureus A017934/97] gi|290920673|gb|EFD97736.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M1015] gi|291096057|gb|EFE26318.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 58-424] gi|291466958|gb|EFF09476.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M809] gi|295128089|gb|EFG57723.1| ribonuclease HII [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576197|gb|EFH94913.1| ribonuclease H [Staphylococcus aureus subsp. aureus MN8] gi|312438378|gb|ADQ77449.1| ribonuclease HII [Staphylococcus aureus subsp. aureus TCH60] gi|315194133|gb|EFU24526.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus CGS00] Length = 255 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 86/201 (42%), Positives = 121/201 (60%), Gaps = 4/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E ++ E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILTENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G HR +F P+++L Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254 >gi|21282856|ref|NP_645944.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MW2] gi|49486083|ref|YP_043304.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MSSA476] gi|297208110|ref|ZP_06924541.1| ribonuclease H [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912191|ref|ZP_07129634.1| ribonuclease H [Staphylococcus aureus subsp. aureus TCH70] gi|38258614|sp|Q8NX02|RNH2_STAAW RecName: Full=Ribonuclease HII; Short=RNase HII gi|56749521|sp|Q6G9W9|RNH2_STAAS RecName: Full=Ribonuclease HII; Short=RNase HII gi|21204295|dbj|BAB94992.1| RNase HII [Staphylococcus aureus subsp. aureus MW2] gi|49244526|emb|CAG42955.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus MSSA476] gi|296887353|gb|EFH26255.1| ribonuclease H [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886437|gb|EFK81639.1| ribonuclease H [Staphylococcus aureus subsp. aureus TCH70] Length = 255 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E +++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTK 115 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G HR +F P+++L Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254 >gi|217970566|ref|YP_002355800.1| ribonuclease HII [Thauera sp. MZ1T] gi|217507893|gb|ACK54904.1| Ribonuclease H [Thauera sp. MZ1T] Length = 203 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 80/184 (43%), Positives = 108/184 (58%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + G+DE GRG L GPVV AA+ILDP G+ DSKK+S RE L I + A+ ++ Sbjct: 15 LICGVDEAGRGPLCGPVVAAAVILDPARPIEGLADSKKLSEAARERLAPLIRARALAWAV 74 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + AS + ID+ NI AT+ A+ AV L + P IDG P+ LP A A++KGD+ Sbjct: 75 AEASVEEIDRLNILHATMLAMQRAVMALGIAPAEVRIDGNRCPK-LPYPARAIVKGDATE 133 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AK RD MR ++P YG +H GYPTA H + G HR +F P Sbjct: 134 PSISAASILAKTARDAAMRELDAQWPQYGLAAHKGYPTAAHLAALAAHGVQAFHRRSFAP 193 Query: 204 LRNL 207 ++ L Sbjct: 194 VKKL 197 >gi|313888218|ref|ZP_07821892.1| ribonuclease HII [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845908|gb|EFR33295.1| ribonuclease HII [Peptoniphilus harei ACS-146-V-Sch2b] Length = 205 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 87/203 (42%), Positives = 116/203 (57%), Gaps = 11/203 (5%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E EK + GIDEVGRG L G VV A+I+ G+NDSKK+S KKRE L Sbjct: 4 YNFEEEYYEKGYKNICGIDEVGRGCLFGDVVSCAVIMPRGKYIEGVNDSKKLSPKKREAL 63 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL------QVIPRSALIDGRS 124 Y KI SAI + I A+ IDK NI AT ++ +A+ENL ++ LID + Sbjct: 64 YLKILESAIAVGIGRANADIIDKVNIRMATHISMINALENLRDSENNKIEADCVLIDAET 123 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 I + A++KGD SIA ASI+AKV RD L + ++YP YG + H GY T H Sbjct: 124 IETGIF--QKAIVKGDESCYSIACASIVAKVYRDNLCKKWAEEYPQYGLEKHKGYATKYH 181 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 ++ +K GPS +HR TF L+N+ Sbjct: 182 REALKAYGPSDMHRKTF--LKNI 202 >gi|254556724|ref|YP_003063141.1| ribonuclease HII [Lactobacillus plantarum JDM1] gi|254045651|gb|ACT62444.1| ribonuclease HII [Lactobacillus plantarum JDM1] Length = 255 Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 89/197 (45%), Positives = 119/197 (60%), Gaps = 3/197 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 H LE VAGIDEVGRG LAGPVV AA++LD + +NDSK+++ KKR Sbjct: 57 HMRLERDFWAHGGQYVAGIDEVGRGPLAGPVVTAAVVLDDHFDLLEVNDSKQLTAKKRAA 116 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L +I A+ + I A Q ID+ NI++AT A+ AV NL V P L+D +P + Sbjct: 117 LMPRILEEAVAVGIGVADAQQIDQLNIYEATRVAMAQAVRNLSVRPTRLLVDAMQVP--V 174 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P + +IKGD+ S SI+AASI+AKV RD LM + + YP Y F ++GY TAKH + Sbjct: 175 PIEQTRLIKGDAKSASISAASIVAKVVRDHLMTMYDQVYPGYDFADNMGYGTAKHLAGLA 234 Query: 190 EKGPSCIHRLTFRPLRN 206 G + IHR +F P+RN Sbjct: 235 SLGATPIHRQSFSPVRN 251 >gi|187251038|ref|YP_001875520.1| ribonuclease H [Elusimicrobium minutum Pei191] gi|186971198|gb|ACC98183.1| Ribonuclease H [Elusimicrobium minutum Pei191] Length = 210 Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 91/207 (43%), Positives = 121/207 (58%), Gaps = 6/207 (2%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKI 63 + E F+ E + +KN + GIDE GRG LAGPVV A+ ++ +NDSKK+ Sbjct: 1 MNELQRFDCE--ILQKNSCALIGIDEAGRGPLAGPVVACAVCAPKEIYHLFEDVNDSKKL 58 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSALID 121 + KRE++Y +I I + AS + ID+ NI +AT A+ A + L + AL+D Sbjct: 59 TDVKREKIYARINGYKIAYGVGFASAKEIDEINILQATFLAMRRACQKFLDINEALALVD 118 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 G +D VI GD+ S SIA AS+IAKV RDR MR AH+ YP YGFD H GY + Sbjct: 119 GNHKIKDFLLPQQTVIDGDAKSFSIAMASVIAKVHRDRYMRKAHELYPVYGFDGHKGYGS 178 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNLS 208 KH IKE GP HR+TF PL+NL+ Sbjct: 179 GKHIAAIKEHGPCKEHRMTFAPLKNLN 205 >gi|91762761|ref|ZP_01264726.1| Ribonuclease HII (RNase HII) [Candidatus Pelagibacter ubique HTCC1002] gi|91718563|gb|EAS85213.1| Ribonuclease HII (RNase HII) [Candidatus Pelagibacter ubique HTCC1002] Length = 186 Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 80/185 (43%), Positives = 117/185 (63%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M +AG+DEVGRG+L GPV AAIIL+ + + DSK ++ KREEL + I ++I + Sbjct: 1 MKILAGVDEVGRGSLIGPVYAAAIILNNSIDKKLLKDSKTLTKDKREELEKYIKKNSIWA 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I AS + I+K NI +A+L A+ A+ L+ P LIDG +P+ + VIKGD Sbjct: 61 IGQASTKEIEKINILQASLLAMKRAILKLKTKPSLVLIDGNKLPDLKNYKLKYVIKGDQK 120 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SI+AASI+AKV+RD+ + KK+ +YG+D++ GY T +H IK+ G + HR TF Sbjct: 121 IPSISAASIVAKVSRDKFITKLSKKFNNYGWDTNSGYGTKEHLNAIKKFGITKYHRKTFS 180 Query: 203 PLRNL 207 P+ +L Sbjct: 181 PICDL 185 >gi|46398965|gb|AAS92168.1| RNase H ribonuclease [Legionella pneumophila] gi|46398967|gb|AAS92169.1| RNase H ribonuclease [Legionella pneumophila] Length = 191 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 80/182 (43%), Positives = 109/182 (59%), Gaps = 4/182 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DEVGRG LAG VV AA+IL G+ DSKK+S K+R L +I A+ + Sbjct: 10 AGVDEVGRGPLAGAVVTAAVILKK--PIDGLTDSKKLSSKQRNLLAIRIKEEALAFAYGR 67 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A + ID+ NIH ATL A+ AVE L + P + ++DG P+ L A+++GDS+ Sbjct: 68 AEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVVVDGAFTPQ-LNVPCKAIVQGDSLIPE 126 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AKV RD M K YP YGF H GY T H++ + GP IHR ++ P+ Sbjct: 127 ISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYSPVA 186 Query: 206 NL 207 +L Sbjct: 187 DL 188 >gi|39995755|ref|NP_951706.1| ribonuclease HII [Geobacter sulfurreducens PCA] gi|81703214|sp|Q74FG0|RNH2_GEOSL RecName: Full=Ribonuclease HII; Short=RNase HII gi|39982519|gb|AAR33979.1| ribonuclease HII [Geobacter sulfurreducens PCA] Length = 217 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 95/201 (47%), Positives = 123/201 (61%), Gaps = 2/201 (0%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 P+ ++ E+ + +AGIDE GRG LAGPVV AA+IL G++DSKK++ Sbjct: 10 PQPAVWDFESRAARRGYRTIAGIDEAGRGPLAGPVVAAAVILPFGTDLPGVDDSKKLTPA 69 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R++L+ I +A+ I + A H+ ID+ NI +ATL A+ AVE L P L+DG S Sbjct: 70 RRDDLFTLIQGTALAIGVGVADHKVIDRINILQATLAAMREAVECLTDPPDYLLVDGIS- 128 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P LP + KGDS S+SIAAASIIAKVTRDRLM + YP YGF H GY +A H Sbjct: 129 PVPLPVAQQTIKKGDSASISIAAASIIAKVTRDRLMAEYDQLYPGYGFAEHKGYGSASHM 188 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 I GPS IHR TFR +R Sbjct: 189 AAIAALGPSPIHRTTFRGVRE 209 >gi|323484795|ref|ZP_08090152.1| ribonuclease HII [Clostridium symbiosum WAL-14163] gi|323401901|gb|EGA94242.1| ribonuclease HII [Clostridium symbiosum WAL-14163] Length = 219 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 83/190 (43%), Positives = 109/190 (57%), Gaps = 3/190 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E E + GIDE GRG LAGPVV AA +L + + +NDSKK+S ++REEL+ Sbjct: 21 EYERKYEE--YSVICGIDEAGRGPLAGPVVAAAAVLPKDAVILWLNDSKKLSERRREELF 78 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ + S ID+ NI +AT +A+ AV L P L D IP Sbjct: 79 LEIREKAVAYGVGIVSPAVIDEINILQATYEAMRQAVSQLPAEPDIFLNDAVMIPGINDK 138 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGD+ S+SIAAAS++AKVTRD +M K YP+YGF H GY T H I+E Sbjct: 139 KQVRIIKGDAKSVSIAAASVLAKVTRDHMMEEYDKLYPEYGFAKHKGYGTKAHMDAIREF 198 Query: 192 GPSCIHRLTF 201 G IHR +F Sbjct: 199 GVCPIHRRSF 208 >gi|308068634|ref|YP_003870239.1| ribonuclease HII [Paenibacillus polymyxa E681] gi|305857913|gb|ADM69701.1| Ribonuclease HII (RNase HII) [Paenibacillus polymyxa E681] Length = 215 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 86/203 (42%), Positives = 114/203 (56%), Gaps = 4/203 (1%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 M I + E E++ +AGIDEVGRG L G VV AA+IL + G++DS Sbjct: 1 MENKEIVAKDMLHYEKKCWEQSCERIAGIDEVGRGCLFGDVVAAAVILPVGELLEGVDDS 60 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK++ KKRE YE I AI + + ID NI +A A+ A+E L V P L Sbjct: 61 KKLTDKKREAYYELIMEKAIAVGVGYVDAHTIDDINIKQAARLAMKQAIEALHVSPDYLL 120 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR-IAHKKYPDYGFDSHVG 178 +D + D+ ++IKGD+ S SIAAASIIAKVTRDRL + KYP+YG H G Sbjct: 121 VDAEKV--DVSIPQLSIIKGDANSQSIAAASIIAKVTRDRLCKGEWDAKYPEYGIGIHKG 178 Query: 179 YPTAKHQQVIKEKGPSCIHRLTF 201 Y T H++ I GP+ +HR +F Sbjct: 179 YATKLHREQILALGPTEMHRRSF 201 >gi|126641188|ref|YP_001084172.1| ribonuclease HII [Acinetobacter baumannii ATCC 17978] Length = 174 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 75/169 (44%), Positives = 107/169 (63%), Gaps = 1/169 (0%) Query: 39 GPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIH 97 G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A+ SI+ A+H ID+ NI Sbjct: 2 GSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWSIAEATHAEIDELNIL 61 Query: 98 KATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTR 157 +AT A+ AVE L+ P+ ++DG IP+ + A++ GD+ I+AASI+AKVTR Sbjct: 62 QATFLAMQRAVEGLKTQPQKVIVDGNQIPKGIIIPCEAIVGGDASHAEISAASILAKVTR 121 Query: 158 DRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 DR M ++YP +GF H GYPT H + I G HR ++ P++ Sbjct: 122 DRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYAPVKR 170 >gi|317152482|ref|YP_004120530.1| Ribonuclease H [Desulfovibrio aespoeensis Aspo-2] gi|316942733|gb|ADU61784.1| Ribonuclease H [Desulfovibrio aespoeensis Aspo-2] Length = 207 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 80/185 (43%), Positives = 106/185 (57%), Gaps = 5/185 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DE GRG LAGPVV A IL G+NDSK++S KRE LY I S A+ ++ Sbjct: 11 IAGVDEAGRGCLAGPVVAGACILPQTYDLPGLNDSKQLSAAKRETLYPLIRSQAVAWAVG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE----DLPCQAFAVIKGD 140 + ID+ NI +AT A+ AV L++ PR IDG I L VI GD Sbjct: 71 LSWPGEIDRVNILQATFLAMGRAVRALKLSPRFLRIDGNKIIPAHALGLGVSQEWVIGGD 130 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 +I+AAS++AK RDRLM +YP YG + H+GY T +H + + GP +HRLT Sbjct: 131 GSVPAISAASVLAKTFRDRLMVKLAARYPGYGLERHMGYGTKEHMEAVARLGPCAMHRLT 190 Query: 201 FRPLR 205 FR +R Sbjct: 191 FRGVR 195 >gi|326798587|ref|YP_004316406.1| ribonuclease H [Sphingobacterium sp. 21] gi|326549351|gb|ADZ77736.1| Ribonuclease H [Sphingobacterium sp. 21] Length = 200 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 71/183 (38%), Positives = 104/183 (56%), Gaps = 1/183 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 +N AG DE GRG LAGPV AA+I + +NDSK +S +R +L E I + A+ Sbjct: 7 QNELIEAGCDEAGRGCLAGPVFAAAVIFSSSFKHGILNDSKILSAAQRYDLREMIENEAL 66 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 +++SAS + ID+ NI A+ A++ A++ L++ L+DG VIKG Sbjct: 67 AFAVASASAEEIDQINILNASFLAMHRALDALKMQAEYILVDGNRFRRYQNIPHQCVIKG 126 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D LSIAAASI+AK RD M ++P+Y + + GYPT +H+ + + G + HR Sbjct: 127 DGKYLSIAAASILAKTYRDDYMDNLANEHPEYDWLKNKGYPTKRHRDAVLKYGLTPHHRK 186 Query: 200 TFR 202 TFR Sbjct: 187 TFR 189 >gi|298504765|gb|ADI83488.1| ribonuclease HII [Geobacter sulfurreducens KN400] Length = 211 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 95/201 (47%), Positives = 123/201 (61%), Gaps = 2/201 (0%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 P+ ++ E+ + +AGIDE GRG LAGPVV AA+IL G++DSKK++ Sbjct: 10 PQPAVWDFESRAARRGYRTIAGIDEAGRGPLAGPVVAAAVILPFGTDLPGVDDSKKLTPA 69 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R++L+ I +A+ I + A H+ ID+ NI +ATL A+ AVE L P L+DG S Sbjct: 70 RRDDLFTLIQGTALAIGVGVADHKVIDRINILQATLAAMREAVECLTDPPDYLLVDGIS- 128 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P LP + KGDS S+SIAAASIIAKVTRDRLM + YP YGF H GY +A H Sbjct: 129 PVPLPVAQQTIKKGDSASISIAAASIIAKVTRDRLMAEYDQLYPGYGFAEHKGYGSASHM 188 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 I GPS IHR TFR +R Sbjct: 189 AAIAALGPSPIHRTTFRGVRE 209 >gi|153831009|ref|ZP_01983676.1| ribonuclease HII [Vibrio cholerae 623-39] gi|148873517|gb|EDL71652.1| ribonuclease HII [Vibrio cholerae 623-39] Length = 180 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 86/181 (47%), Positives = 111/181 (61%), Gaps = 2/181 (1%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSE 60 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A+ ++ S Q ID+ NI +AT+ A+ AV L++ P LIDG Sbjct: 61 KKRLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IP+ LP A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 121 IPK-LPMAAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179 Query: 185 Q 185 Sbjct: 180 L 180 >gi|152999991|ref|YP_001365672.1| ribonuclease HII [Shewanella baltica OS185] gi|166226651|sp|A6WLC0|RNH2_SHEB8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|151364609|gb|ABS07609.1| Ribonuclease H [Shewanella baltica OS185] Length = 210 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 118/199 (59%), Gaps = 6/199 (3%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 EA + + +AG+DEVGRG L G VV AA+ILDP+ G+NDSKK+S K+RE L+++ Sbjct: 9 EADLLAFSTGLIAGVDEVGRGPLVGDVVTAAVILDPSKPISGLNDSKKLSEKRREALFDE 68 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-----ED 128 I A+ + AS ID+ NI AT+ A+ AV L + P L+DG P Sbjct: 69 ICDKALCYQVGRASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRSPIFVAHNG 128 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + ++IKGD + SI+AASIIAKVTRDR M + YP YGF H GYPT H + I Sbjct: 129 AELTSHSIIKGDGLIASISAASIIAKVTRDREMDVLDAAYPQYGFAKHKGYPTKAHFEAI 188 Query: 189 KEKGPSCIHRLTFRPLRNL 207 E G +R +F+P++ L Sbjct: 189 AEHGVFDQYRKSFKPVKAL 207 >gi|188586001|ref|YP_001917546.1| RNase HII [Natranaerobius thermophilus JW/NM-WN-LF] gi|229470478|sp|B2A2P0|RNH2_NATTJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|179350688|gb|ACB84958.1| RNase HII [Natranaerobius thermophilus JW/NM-WN-LF] Length = 198 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 82/187 (43%), Positives = 115/187 (61%), Gaps = 3/187 (1%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSSAI- 80 M GIDE G GA A V V+A +LDP + DSK+++ KKRE L E+I A+ Sbjct: 1 MMYYCGIDEAGFGAGAAQVYVSACVLDPQKPINESLTDSKQLTPKKRELLAEEIKQDALT 60 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I++AS + I+K NI KAT+ A+ ++E L V P IDG + PE +P V+KGD Sbjct: 61 WCIATASVEEIEKLNIRKATILAMKRSLEGLTVKPDMVYIDGINSPE-VPFPVETVVKGD 119 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S +I+AASI+AKV RD M ++YP+YGF H GY T H + I++ GPS IHR T Sbjct: 120 SKIPAISAASILAKVARDNRMLEYDEQYPEYGFKDHKGYLTKNHIKAIQKYGPSPIHRKT 179 Query: 201 FRPLRNL 207 ++P++ + Sbjct: 180 YKPIKKI 186 >gi|83945341|ref|ZP_00957689.1| ribonuclease HII [Oceanicaulis alexandrii HTCC2633] gi|83851175|gb|EAP89032.1| ribonuclease HII [Oceanicaulis alexandrii HTCC2633] Length = 202 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 77/183 (42%), Positives = 107/183 (58%), Gaps = 1/183 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISI 83 +AG+DE GRG LAGPVV AA+IL N ++DSKK+S K+R L I + A + + Sbjct: 9 LIAGVDEAGRGPLAGPVVCAAVILPANFSALDQLDDSKKLSEKRRAALSAIIRAEARVGV 68 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ N+ AT+ A+ AVE L VIP LIDG +P L A A++ GD Sbjct: 69 GIAEPVEIDRLNVLHATMAAMVRAVEGLGVIPDEILIDGNRVPAGLSAPARAIVGGDGRE 128 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I AASIIAK RD++M A ++ YG H GYP+ H+ ++ G + IHRL++ P Sbjct: 129 ACIGAASIIAKTLRDQIMIEAENRFSGYGLAGHKGYPSPSHKAALENLGAAPIHRLSYAP 188 Query: 204 LRN 206 ++ Sbjct: 189 VQQ 191 >gi|71275625|ref|ZP_00651910.1| Ribonuclease H [Xylella fastidiosa Dixon] gi|71899522|ref|ZP_00681679.1| Ribonuclease H [Xylella fastidiosa Ann-1] gi|170729566|ref|YP_001774999.1| ribonuclease HII [Xylella fastidiosa M12] gi|238687911|sp|B0U235|RNH2_XYLFM RecName: Full=Ribonuclease HII; Short=RNase HII gi|71163516|gb|EAO13233.1| Ribonuclease H [Xylella fastidiosa Dixon] gi|71730742|gb|EAO32816.1| Ribonuclease H [Xylella fastidiosa Ann-1] gi|167964359|gb|ACA11369.1| Ribonuclease H [Xylella fastidiosa M12] Length = 234 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 87/194 (44%), Positives = 117/194 (60%), Gaps = 2/194 (1%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEK 74 + N VAG+DE GRG LAGPVVVAA++ DP+ G+NDSK++S RE LY Sbjct: 8 QHLLNSNTALVAGVDEAGRGPLAGPVVVAAVVFDPSQPRINGLNDSKQLSPACRERLYAH 67 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A+ + ID NI++AT+ + AVE + + +SA IDG +P++LPC A Sbjct: 68 IVERALAYKVVMIDSTQIDTLNIYQATMLGMRLAVEGVAHVAKSARIDGNRLPKNLPCPA 127 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 A++ GD+ +I AASI+AKVTRDR M H +YP YGFD H GY T H + E GP Sbjct: 128 EALVGGDARDPTIMAASILAKVTRDRHMVELHLQYPHYGFDKHKGYGTPAHLAALAEHGP 187 Query: 194 SCIHRLTFRPLRNL 207 HR +F P+R + Sbjct: 188 CLEHRQSFAPVRRM 201 >gi|290894532|ref|ZP_06557482.1| rnhB protein [Listeria monocytogenes FSL J2-071] gi|290555913|gb|EFD89477.1| rnhB protein [Listeria monocytogenes FSL J2-071] Length = 261 Score = 234 bits (597), Expect = 6e-60, Method: Composition-based stats. Identities = 87/195 (44%), Positives = 122/195 (62%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ LY Sbjct: 60 QYETDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALY 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I + AI + + H ID+ NI++AT A+ A++ LQ P LID P Sbjct: 120 ETIQTEAIAVGVGIIEHNVIDQVNIYEATKLAMRAALDQLQPEPDFVLIDAM--PLKYSD 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM++ + YP Y F +++GY T KH + Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDETYPGYDFANNMGYGTKKHLHGLDTI 237 Query: 192 GPSCIHRLTFRPLRN 206 G IHR++F P++ Sbjct: 238 GICPIHRISFAPVKE 252 >gi|306842323|ref|ZP_07474982.1| ribonuclease HII [Brucella sp. BO2] gi|306287539|gb|EFM58998.1| ribonuclease HII [Brucella sp. BO2] Length = 220 Score = 234 bits (597), Expect = 6e-60, Method: Composition-based stats. Identities = 97/203 (47%), Positives = 137/203 (67%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 +P P F E + ++ + +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ Sbjct: 13 DLPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLT 72 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +RE LYE I + AI +S++S S + ID +I KA L+A+ AV L + P AL+DGR Sbjct: 73 AARREALYEIILTKAITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGR 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P LPC A++KGD S+SIAAASI+AKVTRDR+M A +P YG + H GY T K Sbjct: 133 DVPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYGTQK 192 Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205 H+ I+ +GP +HR TF P++ Sbjct: 193 HRAAIESEGPVPGLHRYTFAPIK 215 >gi|220928167|ref|YP_002505076.1| ribonuclease HII [Clostridium cellulolyticum H10] gi|254807971|sp|B8I7T9|RNH2_CLOCE RecName: Full=Ribonuclease HII; Short=RNase HII gi|219998495|gb|ACL75096.1| ribonuclease HII/HIII [Clostridium cellulolyticum H10] Length = 255 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 86/200 (43%), Positives = 119/200 (59%), Gaps = 4/200 (2%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + E + +AG+DE GRG LAGPVV AA++L GINDSKK+S +R Sbjct: 57 QKMLSFERQAISEGFNYIAGVDEAGRGPLAGPVVAAAVVLPNGLTIEGINDSKKLSESQR 116 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E+L+ +I A+ IS +YID+ NI AT A+ A+ L+ L+D + + Sbjct: 117 EKLFSEIKEKALSYGISVIDEKYIDEVNILNATKRAMTEALSQLEPTADCILLDAVRL-D 175 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 ++ + +IKGDS+SLSIAAASI+AKVTRDRL+ KYP YGF +H GY T +H Sbjct: 176 NISTKQVPIIKGDSLSLSIAAASILAKVTRDRLLTEYDAKYPQYGFAAHKGYGTPQHISA 235 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 IK+ G IHRL+F ++N Sbjct: 236 IKKFGLCPIHRLSF--VKNF 253 >gi|294791913|ref|ZP_06757061.1| ribonuclease HII [Veillonella sp. 6_1_27] gi|294457143|gb|EFG25505.1| ribonuclease HII [Veillonella sp. 6_1_27] Length = 279 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 87/197 (44%), Positives = 131/197 (66%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ E M ++ ++ VAG+DEVGRG +AGPV VAA+IL P + G+NDSKK++ +KRE L Sbjct: 77 YDYEGMFYDQGIYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREAL 136 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ +S S + ID+ NI++AT A+Y A+ L V + + D +P DL Sbjct: 137 YDIIMDEAVAVSCISYGPEKIDELNIYEATRQAMYEAIRTLSVPAEAVVADAMKLP-DLR 195 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGDS S +IAAASIIAKVTRDR M+ ++P YGF H GY T H++ I++ Sbjct: 196 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDDEFPGYGFGIHKGYYTELHKEAIEQ 255 Query: 191 KGPSCIHRLTFRPLRNL 207 +G + +HR +F P++++ Sbjct: 256 QGVTPLHRKSFEPIKSI 272 >gi|117619478|ref|YP_855728.1| ribonuclease HII [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560885|gb|ABK37833.1| ribonuclease HII [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 211 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 89/184 (48%), Positives = 119/184 (64%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG L G VV AA+ILDP N G+NDSKK+S KKR L+++I A+ S Sbjct: 24 RLVAGVDEVGRGPLVGDVVTAAVILDPANPIIGLNDSKKLSEKKRLALFDEIKEKALAWS 83 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + AS ID+ NI AT+ A+ AV L + P IDG P L +A AV+KGDS+ Sbjct: 84 VGRASPAEIDELNILHATMLAMQRAVAGLSIAPELVFIDGNRCP-SLSMEARAVVKGDSL 142 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKVTRD M ++P+YGF H GYPTA+H ++ E+GP +R +F+ Sbjct: 143 VAAISAASILAKVTRDAEMTELDSRHPEYGFARHKGYPTAEHLAILAERGPLPEYRKSFK 202 Query: 203 PLRN 206 P+R Sbjct: 203 PVRR 206 >gi|167837027|ref|ZP_02463910.1| ribonuclease HII [Burkholderia thailandensis MSMB43] Length = 214 Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats. Identities = 87/182 (47%), Positives = 121/182 (66%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 V G+DE GRG LAGPVV AA++LDP G++DSK +S KKRE L+++I + A+ I Sbjct: 27 IVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAHALGYCI 86 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS + ID NI AT+ A+ AVE L V P A IDG P L ++ A++ GD++ Sbjct: 87 ASASVEEIDTLNILHATMLAMKRAVEGLAVRPTLAKIDGNRCPA-LAIRSEAIVGGDALV 145 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+++P YGFD+H GY T +H ++ GP HR +F P Sbjct: 146 PSISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALRAHGPCEHHRRSFAP 205 Query: 204 LR 205 +R Sbjct: 206 VR 207 >gi|317063087|ref|ZP_07927572.1| ribonuclease HII [Fusobacterium ulcerans ATCC 49185] gi|313688763|gb|EFS25598.1| ribonuclease HII [Fusobacterium ulcerans ATCC 49185] Length = 216 Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats. Identities = 84/180 (46%), Positives = 109/180 (60%), Gaps = 4/180 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + G+DE GRG LAG VV AA+ I D N+ INDSK+IS KKRE LY+ + + + Sbjct: 31 IIGVDEAGRGPLAGSVVAAAVKIKDYNSDLDEINDSKQISEKKRERLYDVVKEHFYVGVG 90 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPR---SALIDGRSIPEDLPCQAFAVIKGDS 141 A + ID+ NI AT A+ A+ENL+ L+DG + + ++KGD Sbjct: 91 VADAKEIDEINILNATFLAMRRALENLKKECEGEYLVLVDGNFKIREYKGRQEPIVKGDG 150 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SLSIAAASIIAKVTRDR+MR KYP YGF+ H GY T +H+ I+E G IHR +F Sbjct: 151 KSLSIAAASIIAKVTRDRMMREEAVKYPLYGFEKHKGYGTKQHRDAIEEHGVLDIHRKSF 210 >gi|113970962|ref|YP_734755.1| ribonuclease HII [Shewanella sp. MR-4] gi|123029487|sp|Q0HGW9|RNH2_SHESM RecName: Full=Ribonuclease HII; Short=RNase HII gi|113885646|gb|ABI39698.1| RNase HII [Shewanella sp. MR-4] Length = 209 Score = 233 bits (596), Expect = 8e-60, Method: Composition-based stats. Identities = 85/189 (44%), Positives = 113/189 (59%), Gaps = 5/189 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG L G VV AA+ILDPN G+NDSKK++ K+RE L+++I A+ Sbjct: 18 GLVAGVDEVGRGPLVGDVVTAAVILDPNRPIAGLNDSKKLTEKRREALFDEICEKALSYH 77 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP----EDLPCQAFAVIK 138 + A+ ID+ NI AT+ A+ AV L P L+DG P + L + +++K Sbjct: 78 VGRATPSEIDELNILHATMLAMQRAVAGLARTPELVLVDGNRSPAFTHQGLSLTSHSIVK 137 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD + SI+AASIIAKVTRDR M YP YGF H GYPT H I E G +R Sbjct: 138 GDGLIASISAASIIAKVTRDREMDALDAAYPQYGFAKHKGYPTKAHFDAIAEHGVFDQYR 197 Query: 199 LTFRPLRNL 207 +F+P++ L Sbjct: 198 KSFKPVKAL 206 >gi|15837643|ref|NP_298331.1| ribonuclease HII [Xylella fastidiosa 9a5c] gi|11387105|sp|Q9PEI7|RNH2_XYLFA RecName: Full=Ribonuclease HII; Short=RNase HII gi|9105983|gb|AAF83851.1|AE003941_5 ribonuclease HII [Xylella fastidiosa 9a5c] Length = 234 Score = 233 bits (596), Expect = 9e-60, Method: Composition-based stats. Identities = 87/194 (44%), Positives = 117/194 (60%), Gaps = 2/194 (1%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEK 74 + N VAG+DE GRG LAGPVVVAA++ DP+ G+NDSK++S RE LY Sbjct: 8 QHLPSSNTALVAGVDEAGRGPLAGPVVVAAVVFDPSQPRINGLNDSKQLSPACRERLYAH 67 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A+ + ID NI++AT+ + AVE + + +SA IDG +P++LPC A Sbjct: 68 IVERALAYKVVMIDSTQIDTLNIYQATMLGMRLAVEGVAHVAKSARIDGNRLPKNLPCPA 127 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 A++ GD+ +I AASI+AKVTRDR M H +YP YGFD H GY T H + E GP Sbjct: 128 EALVGGDARDRTIMAASILAKVTRDRHMVELHLQYPHYGFDKHKGYGTPAHLAALAEHGP 187 Query: 194 SCIHRLTFRPLRNL 207 HR +F P+R + Sbjct: 188 CLEHRRSFAPVRKM 201 >gi|261366997|ref|ZP_05979880.1| ribonuclease HII [Subdoligranulum variabile DSM 15176] gi|282571115|gb|EFB76650.1| ribonuclease HII [Subdoligranulum variabile DSM 15176] Length = 201 Score = 233 bits (596), Expect = 9e-60, Method: Composition-based stats. Identities = 90/191 (47%), Positives = 116/191 (60%), Gaps = 4/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F+ E R V G+DE GRG L GPV AA+ILDP++ GINDSKK+S K+RE L Sbjct: 4 FDAEQCAR---FGVVCGVDEAGRGPLCGPVCCAAVILDPDDPIEGINDSKKLSEKRREAL 60 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +E+IT A+ I S Q ID+ NI AT+D + AV L P LIDG P DL Sbjct: 61 FEEITQRAVAYQIVFISPQEIDERNILWATMDGMSQAVAGLNPQPEYVLIDGNRCPPDLS 120 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A AV+KGD+ S SIAAASI+AKV+RDR M+ +++P Y H GYPT H ++I + Sbjct: 121 HPAKAVVKGDATSASIAAASILAKVSRDRYMKELDQQFPQYQLAKHKGYPTKLHYELIAQ 180 Query: 191 KGPSCIHRLTF 201 G +R +F Sbjct: 181 YGIQPFYRRSF 191 >gi|117921242|ref|YP_870434.1| ribonuclease HII [Shewanella sp. ANA-3] gi|166226654|sp|A0KZ09|RNH2_SHESA RecName: Full=Ribonuclease HII; Short=RNase HII gi|117613574|gb|ABK49028.1| RNase HII [Shewanella sp. ANA-3] Length = 209 Score = 233 bits (596), Expect = 9e-60, Method: Composition-based stats. Identities = 87/189 (46%), Positives = 113/189 (59%), Gaps = 5/189 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG L G VV AA+ILDPN G+NDSKK+S K+RE L+++I A+ Sbjct: 18 GLVAGVDEVGRGPLVGDVVTAAVILDPNRPIAGLNDSKKLSEKRREALFDEICEKALSYH 77 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP----EDLPCQAFAVIK 138 + AS ID+ NI AT+ A+ AV L P L+DG P + L + +++K Sbjct: 78 VGRASPLEIDELNILHATMLAMQRAVAGLARAPELVLVDGNRSPAFTHQGLTLISHSIVK 137 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD + SI+AASIIAKVTRDR M YP YGF H GYPT H I E G +R Sbjct: 138 GDGLIASISAASIIAKVTRDREMDALDAAYPQYGFAKHKGYPTKAHFDAIAEHGVFDQYR 197 Query: 199 LTFRPLRNL 207 +F+P++ L Sbjct: 198 KSFKPVKAL 206 >gi|330830741|ref|YP_004393693.1| ribonuclease HII [Aeromonas veronii B565] gi|328805877|gb|AEB51076.1| Ribonuclease HII [Aeromonas veronii B565] Length = 196 Score = 233 bits (596), Expect = 9e-60, Method: Composition-based stats. Identities = 91/183 (49%), Positives = 121/183 (66%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP N G+NDSKK+S KKR L+++I A+ +I Sbjct: 10 LVAGVDEVGRGPLVGDVVTAAVILDPANPIAGLNDSKKLSEKKRLALFDEIKEKALAWAI 69 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 AS ID+ NI AT+ A+ AV L+V P IDG P LP +A AV+KGDS+ Sbjct: 70 GRASPAEIDELNILHATMLAMQRAVAGLKVTPELVFIDGNRCPA-LPMEARAVVKGDSLV 128 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKVTRD M ++P+YGF H GYPTA+H ++ E+GP +R +F+P Sbjct: 129 AAISAASILAKVTRDGEMTELDSRHPEYGFARHKGYPTAEHLAILAERGPLPEYRKSFKP 188 Query: 204 LRN 206 +R Sbjct: 189 VRR 191 >gi|120599538|ref|YP_964112.1| ribonuclease HII [Shewanella sp. W3-18-1] gi|146292465|ref|YP_001182889.1| ribonuclease HII [Shewanella putrefaciens CN-32] gi|166226653|sp|A4Y557|RNH2_SHEPC RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226655|sp|A1RLL3|RNH2_SHESW RecName: Full=Ribonuclease HII; Short=RNase HII gi|120559631|gb|ABM25558.1| RNase HII [Shewanella sp. W3-18-1] gi|145564155|gb|ABP75090.1| RNase HII [Shewanella putrefaciens CN-32] Length = 209 Score = 233 bits (596), Expect = 9e-60, Method: Composition-based stats. Identities = 87/189 (46%), Positives = 114/189 (60%), Gaps = 5/189 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S K+RE L+++I A+ Sbjct: 18 GLIAGVDEVGRGPLVGDVVTAAVILDPNQPISGLNDSKKLSEKRREALFDEICEKALCYH 77 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP----EDLPCQAFAVIK 138 I AS ID+ NI AT+ A+ AV L + P+ L+DG P + ++IK Sbjct: 78 IGRASPAEIDELNILHATMLAMQRAVAGLNLAPKLVLVDGNRSPFFSHNSQSIVSHSIIK 137 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD + SI+AASIIAKVTRDR M YP YGF H GYPT H + I E G +R Sbjct: 138 GDGLIASISAASIIAKVTRDREMDALDAAYPQYGFAKHKGYPTKAHFEAIAEHGVFDQYR 197 Query: 199 LTFRPLRNL 207 +F+P++ L Sbjct: 198 KSFKPVKAL 206 >gi|28198242|ref|NP_778556.1| ribonuclease HII [Xylella fastidiosa Temecula1] gi|182680879|ref|YP_001829039.1| ribonuclease HII [Xylella fastidiosa M23] gi|32129977|sp|Q87EI6|RNH2_XYLFT RecName: Full=Ribonuclease HII; Short=RNase HII gi|238691079|sp|B2I7N7|RNH2_XYLF2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|28056312|gb|AAO28205.1| ribonuclease HII [Xylella fastidiosa Temecula1] gi|182630989|gb|ACB91765.1| Ribonuclease H [Xylella fastidiosa M23] gi|307579347|gb|ADN63316.1| ribonuclease HII [Xylella fastidiosa subsp. fastidiosa GB514] Length = 234 Score = 233 bits (596), Expect = 9e-60, Method: Composition-based stats. Identities = 87/194 (44%), Positives = 117/194 (60%), Gaps = 2/194 (1%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEK 74 + N VAG+DE GRG LAGPVVVAA++ DP+ G+NDSK++S RE LY Sbjct: 8 QHLLNSNTALVAGVDEAGRGPLAGPVVVAAVVFDPSQPHINGLNDSKQLSPACRERLYAH 67 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A+ + ID NI++AT+ + AVE + + +SA IDG +P++LPC A Sbjct: 68 IVERALAYKVVMIDSTQIDTLNIYQATMLGMRLAVEGVAHVAKSARIDGNRLPKNLPCPA 127 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 A++ GD+ +I AASI+AKVTRDR M H +YP YGFD H GY T H + E GP Sbjct: 128 EALVGGDARDPTIMAASILAKVTRDRHMVELHLQYPHYGFDKHKGYGTPAHLAALAEHGP 187 Query: 194 SCIHRLTFRPLRNL 207 HR +F P+R + Sbjct: 188 CLEHRQSFAPVRRM 201 >gi|71899396|ref|ZP_00681555.1| Ribonuclease H [Xylella fastidiosa Ann-1] gi|71730805|gb|EAO32877.1| Ribonuclease H [Xylella fastidiosa Ann-1] Length = 234 Score = 233 bits (596), Expect = 9e-60, Method: Composition-based stats. Identities = 87/194 (44%), Positives = 117/194 (60%), Gaps = 2/194 (1%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEK 74 + N VAG+DE GRG LAGPVVVAA++ DP+ G+NDSK++S RE LY Sbjct: 8 QHLLNSNTALVAGVDEAGRGPLAGPVVVAAVVFDPSQPHINGLNDSKQLSPACRERLYAH 67 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A+ + ID NI++AT+ + AVE + + +SA IDG +P++LPC A Sbjct: 68 IVERALAYKVVMIDSTQIDTLNIYQATMLGMRLAVEGVAHVAKSARIDGNRLPKNLPCPA 127 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 A++ GD+ +I AASI+AKVTRDR M H +YP YGFD H GY T H + E GP Sbjct: 128 EALVGGDTRDPTIMAASILAKVTRDRHMVELHLQYPHYGFDKHKGYGTPAHLAALAEHGP 187 Query: 194 SCIHRLTFRPLRNL 207 HR +F P+R + Sbjct: 188 CLEHRQSFAPVRRM 201 >gi|288818751|ref|YP_003433099.1| ribonuclease HII [Hydrogenobacter thermophilus TK-6] gi|288788151|dbj|BAI69898.1| ribonuclease HII [Hydrogenobacter thermophilus TK-6] gi|308752338|gb|ADO45821.1| Ribonuclease H [Hydrogenobacter thermophilus TK-6] Length = 198 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 87/194 (44%), Positives = 116/194 (59%), Gaps = 5/194 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E EK + VAG+DE GRG LAGPVV A+IL P PF DSK++S ++REE Y Sbjct: 3 EYELPFWEKGL-LVAGVDEAGRGPLAGPVVACALILPPFTEPFIDRDSKRMSAREREEAY 61 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I S AI I + ID+ NIH+A A+ A+E+L+ + D + E C Sbjct: 62 ELIKSKAIAIGTAVVDSVVIDRINIHRAVKLAMKRALEDLKHPFDVVITDFVKL-EGYNC 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++KGD SLS A AS++AKV RDR+M HK +P Y F H GYPT +H+++IK Sbjct: 121 --LPLVKGDEKSLSCACASVVAKVLRDRIMEHYHKVFPQYEFAQHKGYPTRRHRELIKTY 178 Query: 192 GPSCIHRLTFRPLR 205 G + IHR +F+ LR Sbjct: 179 GFTEIHRRSFKTLR 192 >gi|72162544|ref|YP_290201.1| ribonuclease HII [Thermobifida fusca YX] gi|97189430|sp|Q47MZ1|RNH2_THEFY RecName: Full=Ribonuclease HII; Short=RNase HII gi|71916276|gb|AAZ56178.1| ribonuclease H [Thermobifida fusca YX] Length = 231 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 72/199 (36%), Positives = 112/199 (56%), Gaps = 1/199 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P +++E + VAG+DEVGRGA AGPV+V A I D + P G+ DSK+++ ++R Sbjct: 11 PTYDVEQELIAAGARVVAGLDEVGRGAWAGPVLVCAAITDGSPPPEGLTDSKRLTPRRRT 70 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + E++ S + AS ID+ + +A A + A++ L V P + ++DG+ Sbjct: 71 AMAEQVRSWVRGYAFGQASPAEIDRLGMTEALRLAAHRALDALPVRPDAVIVDGKHDYVG 130 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 P +K D +S+AAAS++AKV RD LM +YP YGF + GYP+ H+ + Sbjct: 131 APWTVRTHVKADLTCVSVAAASVLAKVHRDALMAELDAEYPGYGFATGAGYPSPVHRAAL 190 Query: 189 KEKGPSCIHRLTFRPLRNL 207 E GP+ HRL++ L L Sbjct: 191 AEHGPTPHHRLSWSYLDRL 209 >gi|330752803|emb|CBL88322.1| ribonuclease HII [uncultured Dokdonia sp.] Length = 212 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 72/186 (38%), Positives = 101/186 (54%), Gaps = 8/186 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRG LAGPV AA++L + I + DSK+++ KKR+ L I AI S S Sbjct: 13 CGTDEAGRGCLAGPVTAAAVMLPDSFINEILTDSKQLTEKKRDLLKPIIEQQAIAYSFSH 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENL-------QVIPRSALIDGRSIPEDLPCQAFAVIK 138 + ID NI A++ A++ ++E + Q P+ L+DG VIK Sbjct: 73 VMMEEIDDINILNASITAMHRSIEGMIGTLSRKQKKPQHILVDGNRFKPFTGIDHTTVIK 132 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD L IAAASIIAK RD M H++YP Y + + GYPT +H++ I+ G + HR Sbjct: 133 GDGKYLPIAAASIIAKTERDLFMDRIHEEYPMYNWKKNKGYPTKEHREAIRTYGITKYHR 192 Query: 199 LTFRPL 204 +F+ L Sbjct: 193 KSFKLL 198 >gi|58578839|ref|YP_197051.1| ribonuclease HII [Ehrlichia ruminantium str. Welgevonden] gi|58616897|ref|YP_196096.1| ribonuclease HII [Ehrlichia ruminantium str. Gardel] gi|75356600|sp|Q5FFD4|RNH2_EHRRG RecName: Full=Ribonuclease HII; Short=RNase HII gi|58416509|emb|CAI27622.1| Ribonuclease HII [Ehrlichia ruminantium str. Gardel] gi|58417465|emb|CAI26669.1| Ribonuclease HII [Ehrlichia ruminantium str. Welgevonden] Length = 220 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 86/207 (41%), Positives = 118/207 (57%), Gaps = 8/207 (3%) Query: 9 RPHFELEAM---VREKNMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKI 63 P F +E ++ + G+DEVG G+LAGPVV AA+ N INDSKK+ Sbjct: 9 MPDFSIENEILKLKNNKECIIVGVDEVGYGSLAGPVVSAAVFFPNYNNETTQDINDSKKL 68 Query: 64 SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ--VIPRSALID 121 + K R+++Y KI + SI A ID++NI AT A+ A+ L + +ID Sbjct: 69 TPKTRQKIYNKIITRVKWSIGFAHIFEIDEYNILNATHIAMKRALTGLNAHIDIDYVIID 128 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 G IP ++P A A+I GD+IS SIAAASIIAKVTRDRLM H +YP Y ++ + GY T Sbjct: 129 GNKIP-NIPWNAQAIIGGDTISTSIAAASIIAKVTRDRLMETLHIQYPQYNWNKNKGYGT 187 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNLS 208 H + + G + HR TF P+ +S Sbjct: 188 KDHITSLYKYGKTIHHRNTFTPISKIS 214 >gi|217974046|ref|YP_002358797.1| ribonuclease HII [Shewanella baltica OS223] gi|254807987|sp|B8E7Q2|RNH2_SHEB2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|217499181|gb|ACK47374.1| Ribonuclease H [Shewanella baltica OS223] Length = 210 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 118/199 (59%), Gaps = 6/199 (3%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 EA + + +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S K+RE L+++ Sbjct: 9 EADLLSFSTGLIAGVDEVGRGPLVGDVVTAAVILDPNKPISGLNDSKKLSEKRREALFDE 68 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-----ED 128 I A+ + AS ID+ NI AT+ A+ AV L + P L+DG P Sbjct: 69 ICDKALCYQVGRASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRSPIFVAHNG 128 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + ++IKGD + SI+AASIIAKVTRDR M + YP YGF H GYPT H + I Sbjct: 129 AGLTSHSIIKGDGLIASISAASIIAKVTRDREMDVLDAAYPQYGFAKHRGYPTKAHFEAI 188 Query: 189 KEKGPSCIHRLTFRPLRNL 207 E G +R +F+P++ L Sbjct: 189 AEHGVFDQYRKSFKPVKAL 207 >gi|67920299|ref|ZP_00513819.1| Ribonuclease H [Crocosphaera watsonii WH 8501] gi|67857783|gb|EAM53022.1| Ribonuclease H [Crocosphaera watsonii WH 8501] Length = 196 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 77/194 (39%), Positives = 111/194 (57%), Gaps = 5/194 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKRE 69 + A + + +AG+DEVGRG L GPVV AA++ + I G+ DSK++S K+RE Sbjct: 1 MSAQLFSDSQILIAGVDEVGRGCLFGPVVAAAVVFEKAAISQLPEIGVKDSKQLSAKRRE 60 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L +I + AI IS AS + ID+ NI A+L A+ +V L V P L+DG + Sbjct: 61 ILATEIKNRAISYYISYASAREIDRLNILNASLLAMQRSVTKLSVTPELCLVDGNKKIPN 120 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + +I GD S IAAASI+AKV RD+L+ KYP Y +++ GY T KH+ + Sbjct: 121 ITIPQETIIGGDRTSPIIAAASILAKVWRDKLIIRLATKYPHYDLENNKGYGTKKHRLAL 180 Query: 189 KEKGPSCIHRLTFR 202 +E P HR +F+ Sbjct: 181 QEYAPCFHHRHSFK 194 >gi|315282093|ref|ZP_07870581.1| ribonuclease HII [Listeria marthii FSL S4-120] gi|313614263|gb|EFR87919.1| ribonuclease HII [Listeria marthii FSL S4-120] Length = 262 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 87/195 (44%), Positives = 122/195 (62%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + EA + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ L+ Sbjct: 60 QYEADLFQQGYQYIAGVDEVGRGPLAGPVVAAAVILPADFSIVGINDSKQLSEAKRDALF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I + AI I + H ID+ NI++AT A+ +++ L P LID P Sbjct: 120 ETIKAEAIAIGVGIIEHDVIDQVNIYEATKLAMRESLDQLVPKPDFVLIDAM--PLKYME 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM++ +KYP Y F +++GY T H + Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGTKNHLTGLDSI 237 Query: 192 GPSCIHRLTFRPLRN 206 G IHRL+F P++ Sbjct: 238 GICPIHRLSFSPVKE 252 >gi|225621120|ref|YP_002722378.1| ribonuclease HII [Brachyspira hyodysenteriae WA1] gi|225215940|gb|ACN84674.1| ribonuclease HII [Brachyspira hyodysenteriae WA1] Length = 226 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 88/217 (40%), Positives = 120/217 (55%), Gaps = 15/217 (6%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII----------LDP 50 MF ++ ++ F E + GIDEVGRG L GPV VAA+I L Sbjct: 3 MFLDNKADK--FVYEKEYLSLGYKYICGIDEVGRGCLFGPVTVAAVIMPLELYNENELKK 60 Query: 51 NNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVE 109 NI I+DSKKIS KKREELY+KI A+ SI S + ID+ NI+ A A+ +AV Sbjct: 61 ENIVEEIDDSKKISAKKREELYDKIIDKALCYSIYSVDSKTIDEINIYNAVKLAMVNAVN 120 Query: 110 NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 NL + P LID + D+ + ++ KGD+ S SI ASI+AKV RDR+M Y Sbjct: 121 NLNIKPDILLIDAVKL--DINIKQCSITKGDAKSYSIGCASIVAKVYRDRMMNELPDFYQ 178 Query: 170 DYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 Y + GY T +H + I+ GPS +HR +F P+++ Sbjct: 179 KYKVSKNKGYGTKEHMKTIEMYGPSDMHRYSFEPIKS 215 >gi|238926779|ref|ZP_04658539.1| ribonuclease HII [Selenomonas flueggei ATCC 43531] gi|238885311|gb|EEQ48949.1| ribonuclease HII [Selenomonas flueggei ATCC 43531] Length = 259 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 92/199 (46%), Positives = 123/199 (61%), Gaps = 2/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E E+ VAGIDE GRG LAGPV VAA+IL + +NDSKK+S K REEL Sbjct: 52 YSYERCAAERGNCIVAGIDEAGRGPLAGPVAVAAVILPQEYLLLRLNDSKKLSEKVREEL 111 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YE I S A+ + + ID+ NI +AT +Y AV L P+ LID ++P L Sbjct: 112 YETIVSDAVSYHVELIDAETIDRMNILEATRRGMYDAVAALLPTPQEVLIDAVALPR-LR 170 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +++KGD+ S SIAAASI+AKVTRDRLM K+YP YGF H GY T +H + I++ Sbjct: 171 MASQSIVKGDAKSASIAAASILAKVTRDRLMLTYDKEYPVYGFAQHKGYGTREHIEAIRK 230 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G +HR TF P+R++ + Sbjct: 231 YGICPLHRKTFEPIRSMII 249 >gi|282850261|ref|ZP_06259640.1| ribonuclease HII [Veillonella parvula ATCC 17745] gi|282579754|gb|EFB85158.1| ribonuclease HII [Veillonella parvula ATCC 17745] Length = 265 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 87/197 (44%), Positives = 131/197 (66%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ E M ++ ++ VAG+DEVGRG +AGPV VAA+IL P + G+NDSKK++ +KRE L Sbjct: 63 YDYEGMFYDQGIYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREAL 122 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ +S S + ID+ NI++AT A+Y A+ L V + + D +P DL Sbjct: 123 YDIIMDEAVAVSCISYGPEKIDELNIYEATRQAMYEAIRTLSVPAEAVVADAMKLP-DLR 181 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGDS S +IAAASIIAKVTRDR M+ ++P YGF H GY T H++ I++ Sbjct: 182 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDDEFPGYGFGIHKGYYTELHKEAIEQ 241 Query: 191 KGPSCIHRLTFRPLRNL 207 +G + +HR +F P++++ Sbjct: 242 QGVTPLHRKSFEPIKSI 258 >gi|320354477|ref|YP_004195816.1| RNase HII [Desulfobulbus propionicus DSM 2032] gi|320122979|gb|ADW18525.1| RNase HII [Desulfobulbus propionicus DSM 2032] Length = 224 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 88/213 (41%), Positives = 126/213 (59%), Gaps = 10/213 (4%) Query: 1 MFCNSIPERPH---FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI 57 +F + +P PH F E ++ + VAG+DE GRG LAGPVV A +IL + Sbjct: 6 LFADLLPFSPHTDTFYFERQLQRQGFARVAGVDEAGRGPLAGPVVAACVILPADGDFTPY 65 Query: 58 NDSKKISHKKREELYEKI-TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP- 115 DSK ++ ++RE L+E + T+ A I + AS + I++ NI +A+L A+ A+E +P Sbjct: 66 VDSKTLTRRQRERLFELLSTNGARIGVGEASPREIEQVNILQASLLAMKRAMEACGQVPP 125 Query: 116 ----RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 L+DG +P ++KG+S S SIAAASI+AKVTRDR+M AH +P Y Sbjct: 126 GGVPDFLLVDG-RFEVPVPVGQRTLVKGESKSASIAAASIVAKVTRDRMMADAHALFPQY 184 Query: 172 GFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 GFD H GYPT H++ I+ GP +HR TFR + Sbjct: 185 GFDRHQGYPTKAHREAIRNHGPCPLHRRTFRGV 217 >gi|332292284|ref|YP_004430893.1| Ribonuclease H [Krokinobacter diaphorus 4H-3-7-5] gi|332170370|gb|AEE19625.1| Ribonuclease H [Krokinobacter diaphorus 4H-3-7-5] Length = 212 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 70/186 (37%), Positives = 100/186 (53%), Gaps = 8/186 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRG LAGPV AA++L + I + DSK ++ KKRE L I AI I + Sbjct: 13 CGTDEAGRGCLAGPVTAAAVMLPDDFINEILTDSKLLTEKKRELLKPIIEEQAIAIGFAH 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENL-------QVIPRSALIDGRSIPEDLPCQAFAVIK 138 ID NI A++ ++ ++E++ Q P+ L+DG VIK Sbjct: 73 VMMSEIDDINILNASILGMHRSIESMIGTLSRKQKKPQHILVDGNRFKPFPKIDHTTVIK 132 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD L IAAASIIAK RD M + H+++P Y + + GYPT +H++ I+ G + HR Sbjct: 133 GDGKYLPIAAASIIAKTARDEYMNLIHEEFPMYNWKKNKGYPTKEHREAIRRYGITKYHR 192 Query: 199 LTFRPL 204 +F+ L Sbjct: 193 KSFKLL 198 >gi|262038337|ref|ZP_06011718.1| ribonuclease HII [Leptotrichia goodfellowii F0264] gi|261747641|gb|EEY35099.1| ribonuclease HII [Leptotrichia goodfellowii F0264] Length = 205 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 81/180 (45%), Positives = 110/180 (61%), Gaps = 3/180 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAIISI 83 + G+DE GRG LAGPVV AA+I+ INDSKK+S KKRE+L+E I I+ Sbjct: 14 IIVGVDEAGRGPLAGPVVAAAVIIIQYFKELDEINDSKKLSEKKREQLFELIKEKCIVGT 73 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS--ALIDGRSIPEDLPCQAFAVIKGDS 141 A + ID+ NI AT A+ A+ ++ L+DG + AVIKGDS Sbjct: 74 GIADEKEIDEINILNATFSAMRKAINEVKEKSDFDIVLVDGNHKIRKYEGEQEAVIKGDS 133 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SLSIAAASI+AKVTRD++M+ +++P+Y FD H GY T H++++ +KGP HR TF Sbjct: 134 KSLSIAAASIVAKVTRDKMMKEMSEEFPEYRFDKHKGYATKLHREILLKKGPCKYHRKTF 193 >gi|57238907|ref|YP_180043.1| ribonuclease HII [Ehrlichia ruminantium str. Welgevonden] gi|81637940|sp|Q5HC01|RNH2_EHRRW RecName: Full=Ribonuclease HII; Short=RNase HII gi|57160986|emb|CAH57892.1| ribonuclease HII [Ehrlichia ruminantium str. Welgevonden] Length = 212 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 86/207 (41%), Positives = 118/207 (57%), Gaps = 8/207 (3%) Query: 9 RPHFELEAM---VREKNMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKI 63 P F +E ++ + G+DEVG G+LAGPVV AA+ N INDSKK+ Sbjct: 1 MPDFSIENEILKLKNNKECIIVGVDEVGYGSLAGPVVSAAVFFPNYNNETTQDINDSKKL 60 Query: 64 SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ--VIPRSALID 121 + K R+++Y KI + SI A ID++NI AT A+ A+ L + +ID Sbjct: 61 TPKTRQKIYNKIITRVKWSIGFAHIFEIDEYNILNATHIAMKRALTGLNAHIDIDYVIID 120 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 G IP ++P A A+I GD+IS SIAAASIIAKVTRDRLM H +YP Y ++ + GY T Sbjct: 121 GNKIP-NIPWNAQAIIGGDTISTSIAAASIIAKVTRDRLMETLHIQYPQYNWNKNKGYGT 179 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNLS 208 H + + G + HR TF P+ +S Sbjct: 180 KDHITSLYKYGKTIHHRNTFTPISKIS 206 >gi|51473401|ref|YP_067158.1| ribonuclease HII [Rickettsia typhi str. Wilmington] gi|73917831|sp|Q68XG6|RNH2_RICTY RecName: Full=Ribonuclease HII; Short=RNase HII gi|51459713|gb|AAU03676.1| Endoribonuclease H [Rickettsia typhi str. Wilmington] Length = 193 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 115/191 (60%), Gaps = 5/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + VAG+DE GRG+L GPVV +A+I+D +I GI DSKK+S KR+ L Sbjct: 6 LQYEQKYHN---YIVAGVDEAGRGSLVGPVVASAVIIDKVDIISGIKDSKKLSKNKRDIL 62 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 YE+ITS+ + S + H ID NI +AT A AV NL + P L+DG D Sbjct: 63 YEQITSNYVWSTAIIEHTEIDDINILEATKKACTIAVANLSLKPEKILVDGNMKFSD--V 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++I GD++SLSIAAASIIAKVTRDRLM +YP Y + + GY T +H + I Sbjct: 121 RFISIINGDNLSLSIAAASIIAKVTRDRLMLELSAEYPQYLWHKNYGYGTREHIEAINTH 180 Query: 192 GPSCIHRLTFR 202 G S HR +F+ Sbjct: 181 GLSSYHRKSFK 191 >gi|299822635|ref|ZP_07054521.1| ribonuclease H [Listeria grayi DSM 20601] gi|299816164|gb|EFI83402.1| ribonuclease H [Listeria grayi DSM 20601] Length = 259 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 90/194 (46%), Positives = 123/194 (63%), Gaps = 3/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E+ + +AG+DEVGRG LAGPVV AA+IL + GINDSK++S +KR+ Y Sbjct: 61 QFESEYLKAGYSRIAGVDEVGRGPLAGPVVAAAVILPNDFSVTGINDSKQLSEEKRQYYY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I A+ I IS SH+ ID+ NI++AT A+ A++NL P LID + Sbjct: 121 DIIREQAVSIGISIQSHEVIDQVNIYEATKLAMAEALDNLDPAPDFTLIDAMKL--GYSK 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 Q A+IKGD+ S+SIAAASIIAKVTRD LM+ A + YP Y F ++GY T H + ++ Sbjct: 179 QELAIIKGDTKSISIAAASIIAKVTRDSLMKEAEQLYPGYDFAHNMGYGTKLHLAGLDQQ 238 Query: 192 GPSCIHRLTFRPLR 205 G IHRLTF P++ Sbjct: 239 GVCPIHRLTFAPVK 252 >gi|189043616|sp|A0KHH7|RNH2_AERHH RecName: Full=Ribonuclease HII; Short=RNase HII Length = 196 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 89/184 (48%), Positives = 119/184 (64%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG L G VV AA+ILDP N G+NDSKK+S KKR L+++I A+ S Sbjct: 9 RLVAGVDEVGRGPLVGDVVTAAVILDPANPIIGLNDSKKLSEKKRLALFDEIKEKALAWS 68 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + AS ID+ NI AT+ A+ AV L + P IDG P L +A AV+KGDS+ Sbjct: 69 VGRASPAEIDELNILHATMLAMQRAVAGLSIAPELVFIDGNRCP-SLSMEARAVVKGDSL 127 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKVTRD M ++P+YGF H GYPTA+H ++ E+GP +R +F+ Sbjct: 128 VAAISAASILAKVTRDAEMTELDSRHPEYGFARHKGYPTAEHLAILAERGPLPEYRKSFK 187 Query: 203 PLRN 206 P+R Sbjct: 188 PVRR 191 >gi|298490081|ref|YP_003720258.1| ribonuclease H ['Nostoc azollae' 0708] gi|298231999|gb|ADI63135.1| Ribonuclease H ['Nostoc azollae' 0708] Length = 221 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 83/205 (40%), Positives = 120/205 (58%), Gaps = 7/205 (3%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSK 61 +PE +EL + VAG+DEVGRGAL GPVV AA++L + +P I DSK Sbjct: 17 LPESSWWELSTCANIHGL--VAGVDEVGRGALFGPVVAAAVMLSADALPKLMAAKIKDSK 74 Query: 62 KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K+S +R +L ++I + I A+ ID+ NI +ATL A+ AV L+V P L+ Sbjct: 75 KLSASRRTQLAQQINGLVLDWKIGYATTAEIDQFNILQATLLAMKRAVLKLKVPPALCLV 134 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG + +DL +IKGD SL+IA+ASI+AKV RD L+ KYP Y + + GY Sbjct: 135 DGNQLVKDLLIPQETMIKGDERSLNIASASIMAKVWRDDLLLRLASKYPMYELERNKGYG 194 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLR 205 + +H +++ G S +HR +FRP + Sbjct: 195 SQRHLLALRKYGASPLHRRSFRPCQ 219 >gi|86134237|ref|ZP_01052819.1| Ribonuclease HII [Polaribacter sp. MED152] gi|85821100|gb|EAQ42247.1| Ribonuclease HII [Polaribacter sp. MED152] Length = 199 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 68/184 (36%), Positives = 105/184 (57%), Gaps = 1/184 (0%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81 AG DE GRG L+GPVV AA+IL N +NDSK++S K R+ L I +AI Sbjct: 8 GCLLEAGTDEAGRGCLSGPVVAAAVILPKNFSHPLLNDSKQLSEKNRQILKPIIEENAIA 67 Query: 82 -SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 ++S + +DK N+ +A++ ++ A+E L V P ++DG ++KGD Sbjct: 68 HAVSFVYQEEVDKINVLQASITGMHRAIEALDVTPEFIIVDGNKFRNYKEIPHETIVKGD 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + LSIAAAS++AK RD M H+++ Y + + GYPT +H+ I++ G + HR + Sbjct: 128 AKFLSIAAASVLAKTYRDDYMEKIHQEFSMYNWQKNKGYPTKEHRDAIRKFGATIHHRKS 187 Query: 201 FRPL 204 F+ L Sbjct: 188 FKLL 191 >gi|319425767|gb|ADV53841.1| Ribonuclease H [Shewanella putrefaciens 200] Length = 209 Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 87/189 (46%), Positives = 114/189 (60%), Gaps = 5/189 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S K+RE L+++I A+ Sbjct: 18 GLIAGVDEVGRGPLVGDVVTAAVILDPNQSISGLNDSKKLSEKRREALFDEICEKALCYH 77 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP----EDLPCQAFAVIK 138 I AS ID+ NI AT+ A+ AV L + P+ L+DG P + ++IK Sbjct: 78 IGRASPAEIDELNILHATMLAMQRAVAGLNLAPKLVLVDGNRSPVFSHNSQSIVSHSIIK 137 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD + SI+AASIIAKVTRDR M YP YGF H GYPT H + I E G +R Sbjct: 138 GDGLIASISAASIIAKVTRDREMDALDAVYPQYGFAKHKGYPTKAHFEAIAEHGVFDQYR 197 Query: 199 LTFRPLRNL 207 +F+P++ L Sbjct: 198 KSFKPVKAL 206 >gi|108762969|ref|YP_630793.1| ribonuclease HII [Myxococcus xanthus DK 1622] gi|123247896|sp|Q1D980|RNH2_MYXXD RecName: Full=Ribonuclease HII; Short=RNase HII gi|108466849|gb|ABF92034.1| ribonuclease HII [Myxococcus xanthus DK 1622] Length = 293 Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 90/200 (45%), Positives = 118/200 (59%), Gaps = 3/200 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI-SHKK 67 R E + E+ +AG+DE G LAGPVV AA +L G++DSKKI +K Sbjct: 66 RKLLRFETELWEQGHTHIAGVDEAGMAPLAGPVVAAAAVLPKGFRLKGLDDSKKILDAEK 125 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE L E I A+ ++ A + ID+ NI+ A L A+ AVE L V P L+D R++P Sbjct: 126 RESLAEAIKRDAVAWAVGRAEVEEIDRINIYHAGLLAMRRAVEGLSVKPDHLLVDARTVP 185 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 E +IKGD++SLSIAAASI+AK TRDR M +YP YG +H GYPT H Q Sbjct: 186 EC-SVPQKGIIKGDALSLSIAAASILAKTTRDRWMAELDDQYPGYGLAAHKGYPTPHHLQ 244 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 V++EKG IHR +F P+R Sbjct: 245 VLREKGVLPIHRRSFAPVRE 264 >gi|156742530|ref|YP_001432659.1| ribonuclease HII [Roseiflexus castenholzii DSM 13941] gi|189043650|sp|A7NM86|RNH2_ROSCS RecName: Full=Ribonuclease HII; Short=RNase HII gi|156233858|gb|ABU58641.1| Ribonuclease H [Roseiflexus castenholzii DSM 13941] Length = 224 Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 84/205 (40%), Positives = 114/205 (55%), Gaps = 7/205 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN-----NIPFGINDSKKIS 64 P E E + +AGIDE GRG AGPVV AA+IL + G+ DSK ++ Sbjct: 7 PTVEEERALCAVGYRAIAGIDEAGRGCWAGPVVAAAVILPERVIAKPELLDGVADSKMLT 66 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +R L+E+ITS A+ ++ S ID H I AT A+ A+ L + LID Sbjct: 67 PAQRVALFERITSLAVAWAVGSVPAHVIDSHGILPATRLAMQVALLRLPLPADVLLIDAV 126 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + + P ++KGD LSIAAASIIAKV RDR M + + YGF +H GY TA Sbjct: 127 RL-DGWPLPQRVLVKGDVRCLSIAAASIIAKVMRDRFMEGLGRYWTRYGFAAHKGYGTAA 185 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLS 208 HQ+ ++ GP+ HRLTFRPL +++ Sbjct: 186 HQEALRRYGPTPHHRLTFRPLCDMA 210 >gi|86132077|ref|ZP_01050673.1| Ribonuclease HII [Dokdonia donghaensis MED134] gi|85817411|gb|EAQ38591.1| Ribonuclease HII [Dokdonia donghaensis MED134] Length = 212 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 72/186 (38%), Positives = 101/186 (54%), Gaps = 8/186 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRG LAGPV AA++L + I + DSK+++ KKR+ L I AI S S Sbjct: 13 CGTDEAGRGCLAGPVTAAAVMLPDSFINEILTDSKQLTEKKRDLLKPIIEQQAIAYSFSH 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENL-------QVIPRSALIDGRSIPEDLPCQAFAVIK 138 + ID NI A++ A++ ++E + Q P+ L+DG VIK Sbjct: 73 VMMEEIDDINILNASITAMHRSIEGMISTLSRKQKKPQHILVDGNRFKPFTGLDHTTVIK 132 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD L IAAASIIAK RD M H++YP Y + + GYPT +H++ I+ G + HR Sbjct: 133 GDGKYLPIAAASIIAKTERDLFMDRIHEEYPMYNWKKNKGYPTKEHREAIRTYGITKYHR 192 Query: 199 LTFRPL 204 +F+ L Sbjct: 193 KSFKLL 198 >gi|145300047|ref|YP_001142888.1| ribonuclease HII [Aeromonas salmonicida subsp. salmonicida A449] gi|166225165|sp|A4SQG8|RNH2_AERS4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|142852819|gb|ABO91140.1| ribonuclease HII [Aeromonas salmonicida subsp. salmonicida A449] Length = 196 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 88/182 (48%), Positives = 119/182 (65%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP N G+ DSKK+S KKR L+++I A+ +I Sbjct: 10 LVAGVDEVGRGPLVGDVVTAAVILDPANPITGLADSKKLSEKKRLALFDEIKQKALAWAI 69 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 AS + ID+ NI AT+ A+ AV L + P IDG P LP +A AV+KGDS+ Sbjct: 70 GRASPEEIDELNILHATMLAMQRAVAGLSITPELVFIDGNRCP-SLPMEARAVVKGDSLV 128 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKVTRD M ++P+YGF H GYPT +H ++ E+GP +R +F+P Sbjct: 129 AAISAASILAKVTRDAEMTELDSRHPEYGFARHKGYPTPEHLAILAERGPLPAYRKSFKP 188 Query: 204 LR 205 +R Sbjct: 189 VR 190 >gi|295132562|ref|YP_003583238.1| ribonuclease HII [Zunongwangia profunda SM-A87] gi|294980577|gb|ADF51042.1| ribonuclease HII [Zunongwangia profunda SM-A87] Length = 199 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 65/177 (36%), Positives = 100/177 (56%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT-SSAIISISS 85 G DE GRG +AGPV AA+IL + + DSKK++H+KR L + I A I+ Sbjct: 13 CGTDEAGRGCIAGPVTAAAVILPKHFENEFLRDSKKLTHQKRLLLKKIIENDCASYGITH 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + ID+ NI +++ A++ ++E L P ++DG ++KGD LS Sbjct: 73 IFMETIDEINILNSSILAMHKSIEKLSPEPEHIIVDGNRFKPFKNIAYECIVKGDDKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD M H++YP Y + + GYPT +H++ I++ G + HR +F+ Sbjct: 133 IAAASILAKTYRDEYMESIHEEYPMYNWKKNKGYPTKEHREAIRKYGITKYHRKSFK 189 >gi|303231457|ref|ZP_07318188.1| ribonuclease HII [Veillonella atypica ACS-049-V-Sch6] gi|302513894|gb|EFL55905.1| ribonuclease HII [Veillonella atypica ACS-049-V-Sch6] Length = 266 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 87/197 (44%), Positives = 132/197 (67%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ E M ++ ++ VAG+DEVGRG +AGPV VAA+IL P + G+NDSKK++ +KRE L Sbjct: 63 YDYEGMFYDEGLYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREVL 122 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ +S S + ID+ NI++AT A+Y A+ L V + + D +P DL Sbjct: 123 YDIIMEEAVAVSCISYGPEKIDELNIYEATRQAMYEAIRTLDVPAEAVVADAMKLP-DLT 181 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGDS S +IAAASIIAKVTRDR M+ ++YP YGF H GY T H++ +++ Sbjct: 182 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDEEYPGYGFGIHKGYYTELHKEAVEQ 241 Query: 191 KGPSCIHRLTFRPLRNL 207 +G + +HR +F P++++ Sbjct: 242 QGVTPLHRKSFEPIKSI 258 >gi|313665432|ref|YP_004047303.1| ribonuclease HII [Mycoplasma leachii PG50] gi|312949606|gb|ADR24202.1| ribonuclease HII [Mycoplasma leachii PG50] Length = 207 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 74/189 (39%), Positives = 113/189 (59%), Gaps = 1/189 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 N+ ++G DE GRG LAG +VVA++IL + I DSKK++ K R+ LY++I + + Sbjct: 15 HNITYLSGSDEAGRGCLAGSLVVASVILKLDYFNPLIKDSKKLNPKTRQVLYDEIIKNCL 74 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 I S + +D+ N +A+L + NL++ P ALIDG E + +IKG Sbjct: 75 DYQIIIISSKQVDEFNPLQASLLGFKTTINNLKITPDLALIDGNQNIELTNIKTLPIIKG 134 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D S SIA +SI+AKVTRD+++ + YP+Y F SH GY T KH I++ G IHR Sbjct: 135 DDKSFSIACSSILAKVTRDKILDEYDQIYPNYDFKSHKGYCTKKHLLAIQKYGILDIHRK 194 Query: 200 TFRPLRNLS 208 +++P++ +S Sbjct: 195 SYKPIKKIS 203 >gi|153812956|ref|ZP_01965624.1| hypothetical protein RUMOBE_03363 [Ruminococcus obeum ATCC 29174] gi|149830903|gb|EDM85993.1| hypothetical protein RUMOBE_03363 [Ruminococcus obeum ATCC 29174] Length = 251 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 126/199 (63%), Gaps = 6/199 (3%) Query: 8 ERPHFELEAMV----REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 E+ +E M+ + +++ + GIDEVGRG LAGPVV A+IL ++ +NDSKK+ Sbjct: 49 EKEKLRMEQMMQFEHKYEHLGYLCGIDEVGRGPLAGPVVACAVILPKDHPILYLNDSKKL 108 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 + KREELY+ I A+ + + AS ID+ NI +AT +A+ AV L V+P+ L D Sbjct: 109 TAHKREELYDVIMREAVAVGLGMASPARIDEINILQATYEAMRQAVSKLAVMPQLLLNDA 168 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 +IP + +IKGD+ S SIAAASI+AKVTRDRLM K P+YGF S+ GY +A Sbjct: 169 VTIP-GIEIPQVPIIKGDAKSASIAAASIVAKVTRDRLMVEYDKTMPEYGFASNKGYGSA 227 Query: 183 KHQQVIKEKGPSCIHRLTF 201 +H +++ GP+ IHR +F Sbjct: 228 EHIAALQKYGPTPIHRASF 246 >gi|167563174|ref|ZP_02356090.1| ribonuclease HII [Burkholderia oklahomensis EO147] gi|167570357|ref|ZP_02363231.1| ribonuclease HII [Burkholderia oklahomensis C6786] Length = 214 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 84/182 (46%), Positives = 120/182 (65%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 V G+DE GRG LAGPVV AA++LDP G++DSK +S KKRE L+++I + ++ + Sbjct: 27 IVCGVDEAGRGPLAGPVVAAAVVLDPARPIEGLDDSKALSAKKRERLFDEIVAHSLAYCV 86 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS + ID NI AT+ A+ AVE L + P A IDG P L ++ A++ GD++ Sbjct: 87 ASASVEEIDTLNILHATMLAMKRAVEGLAMRPTLAKIDGNRCPT-LSIRSVAIVGGDALV 145 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SI+AASI+AKVTRDR++ H+ +P YGF+ H GY T +H ++E GP HR +F P Sbjct: 146 PSISAASILAKVTRDRMLVDLHQLFPMYGFNVHAGYGTPRHLAALREHGPCEHHRRSFAP 205 Query: 204 LR 205 +R Sbjct: 206 VR 207 >gi|134299893|ref|YP_001113389.1| ribonuclease HII [Desulfotomaculum reducens MI-1] gi|189043592|sp|A4J661|RNH2_DESRM RecName: Full=Ribonuclease HII; Short=RNase HII gi|134052593|gb|ABO50564.1| Ribonuclease H [Desulfotomaculum reducens MI-1] Length = 198 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 81/184 (44%), Positives = 117/184 (63%), Gaps = 2/184 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G+DE GRG+ + +A ILDP + G+ DSKK+S +KRE L E+I A+ I+ Sbjct: 5 CGVDETGRGSCISGIYASACILDPAHPIEGLRDSKKLSARKREILAEEIKQYALSWCIAQ 64 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS + +++ N+H ATL A+ A+E L + +DG +PE + A A++KGD + + Sbjct: 65 ASLEEVEQLNVHHATLLAMKRAIEGLSIRANKVYVDGIHLPE-VDIPAEAIVKGDDLIPA 123 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AKV RD M H+KYP YGF+SH GY T H++ +K+ GPS IHR T+ P+R Sbjct: 124 ISAASILAKVARDGAMLEYHEKYPQYGFNSHKGYLTKAHREALKKYGPSPIHRKTYAPIR 183 Query: 206 NLSV 209 L V Sbjct: 184 ELLV 187 >gi|88607606|ref|YP_505581.1| ribonuclease HII [Anaplasma phagocytophilum HZ] gi|123494580|sp|Q2GJ70|RNH2_ANAPZ RecName: Full=Ribonuclease HII; Short=RNase HII gi|88598669|gb|ABD44139.1| ribonuclease HII [Anaplasma phagocytophilum HZ] Length = 210 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 78/201 (38%), Positives = 118/201 (58%), Gaps = 4/201 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHK 66 P+F E + V G+DEVG G++AGPVV AA+ + N+ I DSK ++ K Sbjct: 1 MPNFSYEDSFSHGSNAIVVGVDEVGYGSIAGPVVAAAVYIPDRNVECIPNIKDSKLLTPK 60 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI-PRSALIDGRSI 125 KR+ LY+++ S + AS I++HNI A+ A+ A+ENL + L+DG Sbjct: 61 KRDALYKELLSHTVCGTGLASIDEIEEHNILVASHMAMRRALENLNLQRIDLVLVDGSR- 119 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 + ++I GD +S+SIAAASI+AKVTRD +MR H +YP+Y ++ + GY TA H Sbjct: 120 ELKSQWPSKSIINGDELSISIAAASIVAKVTRDNMMRELHDQYPEYHWNKNCGYGTAAHI 179 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 +K+ G + +HR TF P++ Sbjct: 180 LALKQHGATPLHRKTFAPVKK 200 >gi|323691868|ref|ZP_08106122.1| ribonuclease [Clostridium symbiosum WAL-14673] gi|323504075|gb|EGB19883.1| ribonuclease [Clostridium symbiosum WAL-14673] Length = 219 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 83/190 (43%), Positives = 109/190 (57%), Gaps = 3/190 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E E + GIDE GRG LAGPVV AA +L + + +NDSKK+S ++REEL+ Sbjct: 21 EYERKYEE--YSVICGIDEAGRGPLAGPVVAAAAVLPKDAVILWLNDSKKLSERRREELF 78 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ + S ID+ NI +AT +A+ AV L P L D IP Sbjct: 79 LEIREKAVAYGVGIVSPAVIDEINILQATYEAMRQAVSQLPAEPDIFLNDAVMIPGIDDK 138 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGD+ S+SIAAAS++AKVTRD +M K YP+YGF H GY T H I+E Sbjct: 139 KQVRIIKGDAKSVSIAAASVLAKVTRDHMMEEYDKLYPEYGFAKHKGYGTKAHMVAIREF 198 Query: 192 GPSCIHRLTF 201 G IHR +F Sbjct: 199 GVCPIHRRSF 208 >gi|47093922|ref|ZP_00231661.1| ribonuclease HII [Listeria monocytogenes str. 4b H7858] gi|47017708|gb|EAL08502.1| ribonuclease HII [Listeria monocytogenes str. 4b H7858] Length = 204 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 87/195 (44%), Positives = 121/195 (62%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ L+ Sbjct: 3 QYETDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALF 62 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I AI I + H ID+ NI++AT A+ A++ L P LID P Sbjct: 63 ETIKKEAIAIGVGIIEHDVIDQVNIYEATKLAMREALDQLTPEPDFVLIDAM--PLRYTE 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM++ +KYP Y F +++GY T KH + Sbjct: 121 AELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGTKKHLLGLDTI 180 Query: 192 GPSCIHRLTFRPLRN 206 G IHR++F P++ Sbjct: 181 GICPIHRISFAPVKE 195 >gi|312143696|ref|YP_003995142.1| Ribonuclease H [Halanaerobium sp. 'sapolanicus'] gi|311904347|gb|ADQ14788.1| Ribonuclease H [Halanaerobium sp. 'sapolanicus'] Length = 265 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 87/196 (44%), Positives = 122/196 (62%), Gaps = 4/196 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 L+ + V GIDE GRG LAGPVV AA++LD +G++DSKK+S +KRE+L Sbjct: 68 SLQEKLESNGYQAVIGIDEAGRGPLAGPVVAAAVLLDSTKPIYGLDDSKKLSREKREKLL 127 Query: 73 EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL----QVIPRSALIDGRSIPED 128 E+I A + I AS + IDK+NI +AT A+ AV+NL + P L+DG ++ D Sbjct: 128 EEIKKKAKVGIGQASSKEIDKYNIREATFAAMKRAVKNLLPQLEEKPDLLLVDGNTVIPD 187 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L AVI GD+ SIAAASI AKV+RD+++ ++YP+Y F S+ GY TA+H + Sbjct: 188 LKIDQKAVIDGDAKINSIAAASIAAKVSRDQIIFEYAEEYPEYNFKSNKGYGTAEHIAAL 247 Query: 189 KEKGPSCIHRLTFRPL 204 +E G S IHR +F + Sbjct: 248 EEHGSSPIHRKSFGRV 263 >gi|300933906|ref|ZP_07149162.1| ribonuclease HII [Corynebacterium resistens DSM 45100] Length = 212 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 76/195 (38%), Positives = 106/195 (54%), Gaps = 4/195 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREE 70 ++EA + + PVAG+DE GRGA GP+ +AA IL +IP + DSKK++ K+REE Sbjct: 2 DMEAQLVAAGLGPVAGVDEAGRGACCGPISIAACILPEGDIPELARLTDSKKLTEKRREE 61 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A +I S + IDK I A + + AV NL + P L D +P L Sbjct: 62 LFGVIQEVANSYAIIHISAEEIDKLGIQHANVSGMRRAVANLDIEPGYVLTDAVQVP-GL 120 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 V+KGD + I+AAS++AKV+RDR MR +YP YG H GY T H + Sbjct: 121 AQPHLPVVKGDLMVRCISAASVLAKVSRDRFMRELDHEYPGYGLAGHKGYGTKAHMDAVS 180 Query: 190 EKGPSCIHRLTFRPL 204 G + HR T+ + Sbjct: 181 LHGATPYHRYTYSNV 195 >gi|116333443|ref|YP_794970.1| ribonuclease HII [Lactobacillus brevis ATCC 367] gi|122269870|sp|Q03S83|RNH2_LACBA RecName: Full=Ribonuclease HII; Short=RNase HII gi|116098790|gb|ABJ63939.1| RNase HII [Lactobacillus brevis ATCC 367] Length = 257 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 87/198 (43%), Positives = 121/198 (61%), Gaps = 4/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 E + VAGIDEVGRG LAGPVV +A+IL P+ +NDSK+++ K+RE Sbjct: 60 RLHYERPFWARG-ERVAGIDEVGRGPLAGPVVTSAVILPPDFDIPLVNDSKQLTAKERER 118 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY I + A +SI S ID+ NI++AT A+ AV L + P+ ++D IP D+ Sbjct: 119 LYPLILAQAQSVSIGIGSPALIDQINIYQATRVAMQRAVLGLGLAPQQLIVDAMQIPVDV 178 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +IKGD+ S S+AAASI+AKV RD LM + YP YGF + GY TA+H Q + Sbjct: 179 P--QIRLIKGDAKSASVAAASIVAKVYRDHLMATYDELYPGYGFAQNAGYGTAEHLQGLA 236 Query: 190 EKGPSCIHRLTFRPLRNL 207 ++G + IHR TF P++ + Sbjct: 237 DRGVTPIHRRTFSPVQKI 254 >gi|295396862|ref|ZP_06806990.1| ribonuclease HII [Aerococcus viridans ATCC 11563] gi|294974888|gb|EFG50587.1| ribonuclease HII [Aerococcus viridans ATCC 11563] Length = 269 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 83/193 (43%), Positives = 113/193 (58%), Gaps = 1/193 (0%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E +R++ +AG+DEVGRG LAGPVV +A+IL + P NDSK++SH KR+ L Sbjct: 75 ENELRQQGYQLIAGVDEVGRGPLAGPVVTSAVILPSDMPPVYFNDSKQLSHTKRQALVAD 134 Query: 75 ITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI +I + + ID+ NI AT A+ A+ L P LID + + Sbjct: 135 IEKYAIAKTIGIQTAEDIDQSNILIATKQAMMSALNQLHPAPDYVLIDAVHLNDYKKAPQ 194 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 A+IKGD+ +IAAASI AK RD LM YP YGF+++ GY T +H +K+ GP Sbjct: 195 EAIIKGDATVYAIAAASIYAKEYRDNLMAEYADLYPGYGFEANAGYGTKQHLDGLKKYGP 254 Query: 194 SCIHRLTFRPLRN 206 S IHR TF P++N Sbjct: 255 SPIHRKTFAPVKN 267 >gi|269121650|ref|YP_003309827.1| ribonuclease H [Sebaldella termitidis ATCC 33386] gi|268615528|gb|ACZ09896.1| Ribonuclease H [Sebaldella termitidis ATCC 33386] Length = 197 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 79/178 (44%), Positives = 107/178 (60%), Gaps = 2/178 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISI 83 +AG+DE GRG LAGPVV AA+I++ INDSKK++ KKRE+LY I + I Sbjct: 14 IIAGVDEAGRGPLAGPVVAAAVIIEDYFEELEEINDSKKLTEKKREKLYAVIREKRKVGI 73 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +A + IDK NI AT A+ A+E + L+DG + + +IKGD S Sbjct: 74 GTADEKEIDKINILNATFLAMRRALEQIDN-YDIVLVDGNHKIREYSGRQEEIIKGDGRS 132 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 LSIAAASI+AKV RD +M+ ++YPDY F+ H GY T H++++ G IHR TF Sbjct: 133 LSIAAASIVAKVYRDNIMKDFARQYPDYRFEKHKGYGTKLHRELLHAHGACKIHRKTF 190 >gi|255524250|ref|ZP_05391209.1| Ribonuclease H [Clostridium carboxidivorans P7] gi|296185372|ref|ZP_06853782.1| ribonuclease HII [Clostridium carboxidivorans P7] gi|255512075|gb|EET88356.1| Ribonuclease H [Clostridium carboxidivorans P7] gi|296050206|gb|EFG89630.1| ribonuclease HII [Clostridium carboxidivorans P7] Length = 293 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 79/192 (41%), Positives = 114/192 (59%), Gaps = 9/192 (4%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIIL-----DPNNIPFGINDSKKISHKKREELYEKIT 76 N +AG+DEVGRG LAGP+ +++L D ++ GI DSKK+SH RE L + I Sbjct: 98 NYVYIAGVDEVGRGPLAGPIAAGSVVLNLRSHDFKDLLLGIKDSKKLSHDTRERLSKLIK 157 Query: 77 SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 + +I +IS ++ ID+ I + + A L++ P L DG ++ ++L + Sbjct: 158 AKSISYNISVINNAEIDERGIAWCNNEVLRRAASGLKITPDLVLSDGYAV-KNLNIENEF 216 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 VIKGD+ S SIA ASIIAKV RD LM+ K YP YGF+ + GY T +H + IK+ G Sbjct: 217 VIKGDAKSASIACASIIAKVYRDNLMQEYAKIYPQYGFERNSGYGTEEHIEAIKKYGICK 276 Query: 196 IHRLTFRPLRNL 207 IHR +F L+N+ Sbjct: 277 IHRKSF--LKNI 286 >gi|254693174|ref|ZP_05155002.1| ribonuclease HII [Brucella abortus bv. 3 str. Tulya] gi|261213414|ref|ZP_05927695.1| ribonuclease HII [Brucella abortus bv. 3 str. Tulya] gi|260915021|gb|EEX81882.1| ribonuclease HII [Brucella abortus bv. 3 str. Tulya] Length = 220 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 96/203 (47%), Positives = 136/203 (66%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 +P P F E + ++ + +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ Sbjct: 13 DLPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLT 72 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +RE LYE I + AI +S++S S + ID +I KA L+A+ AV L + P AL+DGR Sbjct: 73 AARREALYEIILTKAITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGR 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P LPC A++KGD +SIAAASI+AKVTRDR+M A +P YG + H GY T K Sbjct: 133 DVPPGLPCPGSALVKGDQRCVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQK 192 Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205 H+ I+ +GP +HR TF P++ Sbjct: 193 HRAAIESEGPVPGLHRYTFAPIK 215 >gi|269798033|ref|YP_003311933.1| ribonuclease HII/HIII [Veillonella parvula DSM 2008] gi|269094662|gb|ACZ24653.1| ribonuclease HII/HIII [Veillonella parvula DSM 2008] Length = 265 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 130/197 (65%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ E M ++ ++ VAG+DEVGRG +AGPV VAA+IL P + G+NDSKK++ +KRE L Sbjct: 63 YDYEGMFYDQGIYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREAL 122 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ +S S + ID+ NI++ T A+Y A+ L V + + D +P DL Sbjct: 123 YDIIMDEAVAVSCISYGPEKIDELNIYEVTRQAMYEAIRTLSVPAEAVVADAMKLP-DLT 181 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGDS S +IAAASIIAKVTRDR M+ ++P YGF H GY T H++ I++ Sbjct: 182 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDDEFPGYGFGIHKGYYTELHKEAIEQ 241 Query: 191 KGPSCIHRLTFRPLRNL 207 +G + +HR +F P++++ Sbjct: 242 QGVTPLHRKSFEPIKSI 258 >gi|124515656|gb|EAY57165.1| ribonuclease HII [Leptospirillum rubarum] gi|206602288|gb|EDZ38770.1| Ribonuclease HII [Leptospirillum sp. Group II '5-way CG'] Length = 228 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 90/209 (43%), Positives = 114/209 (54%), Gaps = 9/209 (4%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISHK 66 P +LE +K VAG+DEVGRGALAGPVV AA+IL GI DSK +S Sbjct: 4 PQADLEREFYKKGFLRVAGVDEVGRGALAGPVVAAAVILPMPLEFFENIGIRDSKLLSPS 63 Query: 67 KREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KR L +++ S S+ ++ I+ NI +ATL A+ AVE L P L+DGR I Sbjct: 64 KRVALSDRLRSLLFSWSVGESTVSEINALNIRRATLLAMKRAVEGLPEFPDILLVDGREI 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 DL C+ + GD LSIAAASIIAKV RD +M Y YG + GY TA+H+ Sbjct: 124 VPDLVCKQESFTGGDRRILSIAAASIIAKVYRDNMMSELDNAYAGYGLAENKGYGTAQHR 183 Query: 186 QVIKEKGPSCIHR----LTF-RPLRNLSV 209 + +G S IHR TF P R S+ Sbjct: 184 DGLLLRGVSSIHRAVFCKTFLEPFRKKSI 212 >gi|163842670|ref|YP_001627074.1| ribonuclease HII [Brucella suis ATCC 23445] gi|189043569|sp|B0CK74|RNH2_BRUSI RecName: Full=Ribonuclease HII; Short=RNase HII gi|163673393|gb|ABY37504.1| Ribonuclease HII [Brucella suis ATCC 23445] Length = 220 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 98/203 (48%), Positives = 138/203 (67%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 +P P F E + ++ + +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ Sbjct: 13 DLPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLT 72 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +RE LYE I + AI +S++S S + ID +IHKA L+A+ AV L + P AL+DGR Sbjct: 73 AARREALYEIILTKAITVSVASLSARSIDASDIHKAALEAMRRAVIGLTLKPCHALVDGR 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P LPC A++KGD S+SIAAASI+AKVTRDR+M A +P YG + H GY T K Sbjct: 133 DVPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQK 192 Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205 H+ I+ +GP +HR TF P++ Sbjct: 193 HRAAIESEGPVPGLHRYTFAPIK 215 >gi|110633060|ref|YP_673268.1| ribonuclease HII [Mesorhizobium sp. BNC1] gi|110284044|gb|ABG62103.1| RNase HII [Chelativorans sp. BNC1] Length = 258 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 97/203 (47%), Positives = 135/203 (66%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 +P RP F +E + + + PVAG+DE GRG LAGPVV AA++LDP+ IP G++DSK+++ Sbjct: 18 DLPVRPDFTIEWKIMREGLAPVAGLDEAGRGPLAGPVVAAAVVLDPDRIPEGLDDSKRLT 77 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 + RE L ++I A +S++S ID+ NI KA+L+A+ A++ L V P AL DGR Sbjct: 78 AEARERLVQEIFEVAAAVSVASLCAASIDESNILKASLEAMRRALDGLCVRPAYALADGR 137 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 IP LPC AV+KGD S SIAAAS++AKV RDR+M P YGF SHVGY T + Sbjct: 138 DIPPGLPCPCRAVVKGDQRSQSIAAASMVAKVVRDRMMVRTGTLMPHYGFHSHVGYATER 197 Query: 184 HQQVIKEKGP-SCIHRLTFRPLR 205 H++ I GP + +HR++F P + Sbjct: 198 HREAITAYGPVTRLHRMSFSPFK 220 >gi|254718570|ref|ZP_05180381.1| ribonuclease HII [Brucella sp. 83/13] gi|265983545|ref|ZP_06096280.1| ribonuclease HII [Brucella sp. 83/13] gi|264662137|gb|EEZ32398.1| ribonuclease HII [Brucella sp. 83/13] Length = 220 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 97/203 (47%), Positives = 136/203 (66%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 +P P F E + ++ +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ Sbjct: 13 DLPLAPDFSQEQQLMKRGSKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLT 72 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +RE LYE I + AI +S++S S + ID +I KA L+A+ AV L + P AL+DGR Sbjct: 73 AARREALYEIILAKAIAVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGR 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P LPC A++KGD S+SIAAASI+AKVTRDR+M A +P YG + H GY T K Sbjct: 133 DVPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYGTQK 192 Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205 H+ I+ +GP +HR TF P++ Sbjct: 193 HRAAIESEGPVPGLHRYTFAPIK 215 >gi|71907386|ref|YP_284973.1| ribonuclease HII/HIII [Dechloromonas aromatica RCB] gi|97182398|sp|Q47F78|RNH2_DECAR RecName: Full=Ribonuclease HII; Short=RNase HII gi|71847007|gb|AAZ46503.1| RNase HII [Dechloromonas aromatica RCB] Length = 196 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 94/188 (50%), Positives = 121/188 (64%), Gaps = 3/188 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 V GIDE GRG LAGPVV AA+ILDP G+NDSKK+S KKR+ L E I A+ + Sbjct: 9 GLVCGIDEAGRGPLAGPVVAAAVILDPERPIVGLNDSKKLSEKKRDALAEIIRERALAWA 68 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 ++ A+ + ID+ NI +AT+ A+ AV LQV SAL+DG P+ L AV+KGD Sbjct: 69 VAEATVEEIDRLNILQATMLAMQRAVAALQVKAESALVDGNRCPK-LDIPCEAVVKGDGK 127 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SIAAASI+AK RD M + H +YP YGFD H+GYPTA H ++ G S +HR +F Sbjct: 128 IASIAAASILAKTVRDAGMLVLHAQYPHYGFDRHMGYPTAAHFAALEAHGASPVHRRSFG 187 Query: 203 PL-RNLSV 209 P+ R LS+ Sbjct: 188 PVARQLSL 195 >gi|295094900|emb|CBK83991.1| Ribonuclease HII [Coprococcus sp. ART55/1] Length = 251 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 90/197 (45%), Positives = 125/197 (63%), Gaps = 6/197 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE E +K + GIDEVGRG LAGPVV AA+IL + +NDSK+++ KKRE L Sbjct: 59 FEFERKYADKGY--ICGIDEVGRGPLAGPVVAAAVILPKDCDILYLNDSKQLTPKKREAL 116 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y++I + A+ + + A+ + ID+ N+ A +A+ A+ LQV P+ L D +IP + Sbjct: 117 YDEIMAKAVAVGVGMANEKVIDEINVLNADYEAMKQAISKLQVKPQLLLNDAVNIP-GVD 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +IKGD++S SIAAASIIAKVTRDRLM YP YGF ++GY TA+H +K+ Sbjct: 176 IEQVGIIKGDTLSASIAAASIIAKVTRDRLMVEYDSLYPGYGFAKNMGYGTAEHIDALKK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 GP IHR TF ++N Sbjct: 236 IGPCAIHRRTF--IKNF 250 >gi|205373355|ref|ZP_03226159.1| ribonuclease HII [Bacillus coahuilensis m4-4] Length = 253 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 88/196 (44%), Positives = 129/196 (65%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + E + +AG+DEVGRG LAGPVV AA+IL + G++DSKK++ K+EE++ Sbjct: 58 QYEKKLWEGGIKRIAGVDEVGRGPLAGPVVAAAVILPQSFYYPGLDDSKKLTESKKEEMF 117 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I ++AI +S+S +H ID NI++AT A+ A+ L + P LID + + Sbjct: 118 DYINATAISVSVSIINHDVIDTVNIYEATKLAMQQAINGLDLTPEYLLIDAMKL--SMGI 175 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++IKGDS S+SIAAASIIAKVTRDRLM+ YP Y F+ ++GY T +H + +K Sbjct: 176 EEESIIKGDSKSISIAAASIIAKVTRDRLMKEYATTYPHYAFERNMGYGTTEHLEGLKSV 235 Query: 192 GPSCIHRLTFRPLRNL 207 GPS IHR +F P++ L Sbjct: 236 GPSPIHRRSFAPIKEL 251 >gi|313619218|gb|EFR90981.1| ribonuclease HII [Listeria innocua FSL S4-378] Length = 261 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 86/195 (44%), Positives = 117/195 (60%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK+++ KR+ L+ Sbjct: 60 RYETDLFKQGFQYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLNEAKRDILF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I AI I I H ID+ NI++AT A+ A+E L P LID P Sbjct: 120 DVIKEEAISIGIGIIDHDVIDQVNIYEATKIAMRTALEELNPAPDFVLIDAM--PLKYSE 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDR+M+ YP Y F +++GY T KH + Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRMMQQYDALYPGYDFVNNMGYGTKKHLNGLDTI 237 Query: 192 GPSCIHRLTFRPLRN 206 G IHRL+F P++ Sbjct: 238 GICPIHRLSFSPVKE 252 >gi|313892616|ref|ZP_07826203.1| ribonuclease HII [Dialister microaerophilus UPII 345-E] gi|313119013|gb|EFR42218.1| ribonuclease HII [Dialister microaerophilus UPII 345-E] Length = 264 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 86/199 (43%), Positives = 128/199 (64%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + +E+ ++ M V GIDEVGRG LAGPV VAA+IL P+ +NDSKK+S +KRE + Sbjct: 56 YAVESEFYKQGMQYVVGIDEVGRGPLAGPVTVAAVILKPHWFVENLNDSKKVSKEKREII 115 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +KI A+ ISI+ S + ID NI++AT+ A+Y AV+ L++ P++ ++D P Sbjct: 116 SKKIHEEALAISITDLSVEEIDTLNIYQATMLAMYQAVKKLEIKPQAVIVDAM--PLHFQ 173 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++I GDS S S+AAASI+AKV RD +M K YP Y F+ + GY T KH + I E Sbjct: 174 VPCKSLIHGDSKSASVAAASIVAKVHRDHIMDEYAKIYPGYDFEDNKGYGTKKHMEAIYE 233 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR ++ P++++ + Sbjct: 234 LGITPIHRKSYEPVKSIVL 252 >gi|281424964|ref|ZP_06255877.1| ribonuclease HII [Prevotella oris F0302] gi|281400808|gb|EFB31639.1| ribonuclease HII [Prevotella oris F0302] Length = 223 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 72/186 (38%), Positives = 103/186 (55%), Gaps = 11/186 (5%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL P+ +NDSKK+S ++R L E+I A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPPDYDNPALNDSKKLSVRQRYALREQIEHDALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-----DLP-----CQAFA 135 A+ + ID+ NI A+ A++ A++ L++ P + ++DG LP Sbjct: 73 ATPEEIDEINILHASFLAMHRALDQLKIRPEAVIVDGNHFDPYVVGKGLPNAGKQLPHTC 132 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 VIKGD +IAAASI+AK RD M K YP Y ++ + GYPT KH I E G Sbjct: 133 VIKGDGKYQNIAAASILAKTYRDDYMTEQAKLYPFYDWEKNKGYPTKKHYAGIAEHGICE 192 Query: 196 IHRLTF 201 +HR ++ Sbjct: 193 LHRRSY 198 >gi|328952474|ref|YP_004369808.1| Ribonuclease H [Desulfobacca acetoxidans DSM 11109] gi|328452798|gb|AEB08627.1| Ribonuclease H [Desulfobacca acetoxidans DSM 11109] Length = 215 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 81/197 (41%), Positives = 114/197 (57%), Gaps = 6/197 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 +LE R + + +AG+DEVGRG LAGPVV AA+IL +++ + DSK+++ +RE Sbjct: 19 DLEEAYRRQGIRFIAGVDEVGRGPLAGPVVAAAVILASDSVFPRLTDSKQLTPARREFFD 78 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++ A+ +I I+ I A+L A+ AV++L + P LIDG P L Sbjct: 79 RQVRDQALAFAIQEVGVPEIESLGILSASLKAMALAVQSLVLKPELVLIDG---PWGLQI 135 Query: 132 QAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 Q KGD LSIAAAS++AKV RDR M+ H+ YP Y F SH GY T +H + I+ Sbjct: 136 QVQQQPIIKGDQRCLSIAAASVLAKVYRDRQMQAIHELYPHYNFASHKGYGTREHLEAIR 195 Query: 190 EKGPSCIHRLTFRPLRN 206 GP +HR TFR +R Sbjct: 196 RWGPCPVHRRTFRGVRE 212 >gi|114048186|ref|YP_738736.1| ribonuclease HII [Shewanella sp. MR-7] gi|123131228|sp|Q0HT76|RNH2_SHESR RecName: Full=Ribonuclease HII; Short=RNase HII gi|113889628|gb|ABI43679.1| RNase HII [Shewanella sp. MR-7] Length = 209 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 85/189 (44%), Positives = 112/189 (59%), Gaps = 5/189 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG L G VV AA+ILDPN G+NDSKK++ K+RE L+++I A+ Sbjct: 18 GLVAGVDEVGRGPLVGDVVTAAVILDPNRPIAGLNDSKKLTEKRREALFDEICEKALSFH 77 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE----DLPCQAFAVIK 138 + AS ID+ NI AT+ A+ AV L + P L+DG P + +++K Sbjct: 78 VGRASPAEIDELNILHATMLAMQRAVAGLSLTPELVLVDGNRSPAFNHAGQALTSHSIVK 137 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD + SI+AASIIAKVTRDR M YP YGF H GYPT H I E G +R Sbjct: 138 GDGLIASISAASIIAKVTRDREMDALDAAYPQYGFAKHKGYPTKAHFDAIAEHGVFDQYR 197 Query: 199 LTFRPLRNL 207 +F+P++ L Sbjct: 198 KSFKPVKAL 206 >gi|313206271|ref|YP_004045448.1| ribonuclease h [Riemerella anatipestifer DSM 15868] gi|312445587|gb|ADQ81942.1| Ribonuclease H [Riemerella anatipestifer DSM 15868] gi|325336287|gb|ADZ12561.1| Ribonuclease HII [Riemerella anatipestifer RA-GD] Length = 194 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 77/177 (43%), Positives = 109/177 (61%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG L GPVV AA+ILD N INDSKK++ K R EL I A+ +I+ Sbjct: 14 AGCDEAGRGCLCGPVVAAAVILDENFEQNLINDSKKLNFKTRNELDLYIKDYALDYAIAE 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 +ID+HNI A++ A++ A++ L + P L+DG +IKGDS LS Sbjct: 74 LPPSFIDEHNILNASIHAMHLALDKLTIRPELILVDGNRFKPYPFTPHECIIKGDSKVLS 133 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD +M H++YP+YG++ + GY T +H++ + + GP+ HR +FR Sbjct: 134 IAAASILAKNYRDHVMIKLHEEYPEYGWNKNFGYATKQHREALNKLGPTIHHRKSFR 190 >gi|62289376|ref|YP_221169.1| ribonuclease HII [Brucella abortus bv. 1 str. 9-941] gi|82699301|ref|YP_413875.1| ribonuclease HII [Brucella melitensis biovar Abortus 2308] gi|237814863|ref|ZP_04593861.1| Ribonuclease HII [Brucella abortus str. 2308 A] gi|254688691|ref|ZP_05151945.1| ribonuclease HII [Brucella abortus bv. 6 str. 870] gi|254696818|ref|ZP_05158646.1| ribonuclease HII [Brucella abortus bv. 2 str. 86/8/59] gi|254729725|ref|ZP_05188303.1| ribonuclease HII [Brucella abortus bv. 4 str. 292] gi|256256938|ref|ZP_05462474.1| ribonuclease HII [Brucella abortus bv. 9 str. C68] gi|260545871|ref|ZP_05821612.1| ribonuclease HII [Brucella abortus NCTC 8038] gi|260754167|ref|ZP_05866515.1| ribonuclease HII [Brucella abortus bv. 6 str. 870] gi|260757387|ref|ZP_05869735.1| ribonuclease HII [Brucella abortus bv. 4 str. 292] gi|260761211|ref|ZP_05873554.1| ribonuclease HII [Brucella abortus bv. 2 str. 86/8/59] gi|260883192|ref|ZP_05894806.1| ribonuclease HII [Brucella abortus bv. 9 str. C68] gi|297247789|ref|ZP_06931507.1| ribonuclease HII [Brucella abortus bv. 5 str. B3196] gi|73917601|sp|Q57EX6|RNH2_BRUAB RecName: Full=Ribonuclease HII; Short=RNase HII gi|97182300|sp|Q2YMC3|RNH2_BRUA2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|62195508|gb|AAX73808.1| RnhB, ribonuclease HII [Brucella abortus bv. 1 str. 9-941] gi|82615402|emb|CAJ10371.1| Ribonuclease HII/HIII [Brucella melitensis biovar Abortus 2308] gi|237789700|gb|EEP63910.1| Ribonuclease HII [Brucella abortus str. 2308 A] gi|260097278|gb|EEW81153.1| ribonuclease HII [Brucella abortus NCTC 8038] gi|260667705|gb|EEX54645.1| ribonuclease HII [Brucella abortus bv. 4 str. 292] gi|260671643|gb|EEX58464.1| ribonuclease HII [Brucella abortus bv. 2 str. 86/8/59] gi|260674275|gb|EEX61096.1| ribonuclease HII [Brucella abortus bv. 6 str. 870] gi|260872720|gb|EEX79789.1| ribonuclease HII [Brucella abortus bv. 9 str. C68] gi|297174958|gb|EFH34305.1| ribonuclease HII [Brucella abortus bv. 5 str. B3196] Length = 220 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 97/203 (47%), Positives = 137/203 (67%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 +P P F E + ++ + +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ Sbjct: 13 DLPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLT 72 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +RE LYE I + AI +S++S S + ID +I KA L+A+ AV L + P AL+DGR Sbjct: 73 AARREALYEIILTKAITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGR 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P LPC A++KGD S+SIAAASI+AKVTRDR+M A +P YG + H GY T K Sbjct: 133 DVPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQK 192 Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205 H+ I+ +GP +HR TF P++ Sbjct: 193 HRAAIESEGPVPGLHRYTFAPIK 215 >gi|189043695|sp|Q11KH2|RNH2_MESSB RecName: Full=Ribonuclease HII; Short=RNase HII Length = 253 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 97/203 (47%), Positives = 135/203 (66%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 +P RP F +E + + + PVAG+DE GRG LAGPVV AA++LDP+ IP G++DSK+++ Sbjct: 13 DLPVRPDFTIEWKIMREGLAPVAGLDEAGRGPLAGPVVAAAVVLDPDRIPEGLDDSKRLT 72 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 + RE L ++I A +S++S ID+ NI KA+L+A+ A++ L V P AL DGR Sbjct: 73 AEARERLVQEIFEVAAAVSVASLCAASIDESNILKASLEAMRRALDGLCVRPAYALADGR 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 IP LPC AV+KGD S SIAAAS++AKV RDR+M P YGF SHVGY T + Sbjct: 133 DIPPGLPCPCRAVVKGDQRSQSIAAASMVAKVVRDRMMVRTGTLMPHYGFHSHVGYATER 192 Query: 184 HQQVIKEKGP-SCIHRLTFRPLR 205 H++ I GP + +HR++F P + Sbjct: 193 HREAITAYGPVTRLHRMSFSPFK 215 >gi|330836476|ref|YP_004411117.1| Ribonuclease H [Spirochaeta coccoides DSM 17374] gi|329748379|gb|AEC01735.1| Ribonuclease H [Spirochaeta coccoides DSM 17374] Length = 210 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 101/180 (56%), Gaps = 4/180 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + GIDE GRG LAGPV AA+IL P+ + DSKK+S K+R I A+ I Sbjct: 19 RICGIDEAGRGPLAGPVCAAAVILPPDFPRDILGDSKKLSEKQRLAAEIIIREQAVWGIG 78 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 AS Q ID++NI +AT A+ AVE + LIDG + A+IKGDS Sbjct: 79 WASAQEIDRYNILQATFRAMRRAVEKVIAQDRQVELLLIDGNRTFPH-AIPSAAIIKGDS 137 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I AASI+AK RDR MR +K+P+Y F+ H GYP+ +H + GP +HRL+F Sbjct: 138 KVPEIMAASILAKTARDRFMRRMAEKWPEYNFEQHKGYPSRQHVSAYRTHGPCPLHRLSF 197 >gi|330444662|ref|YP_004377648.1| ribonuclease HII [Chlamydophila pecorum E58] gi|328807772|gb|AEB41945.1| ribonuclease HII [Chlamydophila pecorum E58] Length = 209 Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 86/195 (44%), Positives = 122/195 (62%), Gaps = 4/195 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + ++ VAG+DE GRG LAGPVV A IL N + GINDSK+++ K+R + Sbjct: 11 AFERELAQEGFTLVAGVDEAGRGPLAGPVVAGACILPKNKVFLGINDSKQLTPKQRGLIR 70 Query: 73 EKIT--SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 E + S I I S + ID+ NI +AT +A++ A+ +L ++P L+DG + +P Sbjct: 71 ETLLCDSEVISGIGVVSVERIDEINILEATKEAMHQAIASLSLVPDFLLVDGLHLSHRVP 130 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 C+ +IKGD+ S SIAAASI+AK RD LMR H+KYP+YGFD H GY TA H + ++ Sbjct: 131 CK--KIIKGDARSASIAAASILAKEHRDDLMRDLHQKYPEYGFDKHKGYGTAAHMEALRR 188 Query: 191 KGPSCIHRLTFRPLR 205 G S HR +F P++ Sbjct: 189 YGASPCHRRSFSPVK 203 >gi|51893167|ref|YP_075858.1| ribonuclease HII [Symbiobacterium thermophilum IAM 14863] gi|81388613|sp|Q67MS9|RNH22_SYMTH RecName: Full=Ribonuclease HII 2; Short=RNase HII 2 gi|51856856|dbj|BAD41014.1| ribonuclease HII [Symbiobacterium thermophilum IAM 14863] Length = 211 Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 78/203 (38%), Positives = 109/203 (53%), Gaps = 11/203 (5%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 LE ++ V G+DE GRG LAGPVV AA IL P+ G++DSK+++ K+R Sbjct: 1 MADLRLERVLWRHGCQ-VIGVDEAGRGPLAGPVVAAACILPPDAALPGVDDSKRMTEKRR 59 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS---------A 118 E + I + A+ I ID+ NI +AT +A+ AVE + + + Sbjct: 60 EAAFAAIQAVAVGWGIGIVDAARIDEINILQATFEAMAQAVEGARAMAAARPGRTAEAAL 119 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 L+DG P V+ GD SLSIAAASI+AKVTRDR+M YP+YGF + G Sbjct: 120 LVDGNRPLPLWPGWQRTVVGGDHKSLSIAAASILAKVTRDRMMIEYDAHYPEYGFARNKG 179 Query: 179 YPTAKHQQVIKEKGPSCIHRLTF 201 Y + +H ++ GP +HR TF Sbjct: 180 YGSREHWDALERYGPCPLHRRTF 202 >gi|146328634|ref|YP_001209596.1| ribonuclease HII [Dichelobacter nodosus VCS1703A] gi|189043593|sp|A5EV63|RNH2_DICNV RecName: Full=Ribonuclease HII; Short=RNase HII gi|146232104|gb|ABQ13082.1| ribonuclease HII [Dichelobacter nodosus VCS1703A] Length = 189 Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 84/183 (45%), Positives = 113/183 (61%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DE GRGA G VV AA+IL + + DSKK+S KRE L I AI ++ + Sbjct: 2 IAGVDEAGRGAWIGNVVAAAVILPNDYDLPDLTDSKKLSAAKRERLCAAIYEQAIAVACA 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S + ID+ NIH ATL A+ AV L+V P LIDG+ PE LP +I GD++ Sbjct: 62 WCSPEEIDQLNIHYATLCAMKKAVITLKVAPTEVLIDGKFAPE-LPFPTRTIIGGDALEP 120 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKVTRD+ M YPDYGF +H GY T KHQQ +++ G +HR ++ P+ Sbjct: 121 AISAASIVAKVTRDKQMIALDALYPDYGFAAHKGYGTQKHQQALRQFGVLPLHRRSYAPI 180 Query: 205 RNL 207 L Sbjct: 181 AAL 183 >gi|296127016|ref|YP_003634268.1| ribonuclease H [Brachyspira murdochii DSM 12563] gi|296018832|gb|ADG72069.1| Ribonuclease H [Brachyspira murdochii DSM 12563] Length = 232 Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 84/206 (40%), Positives = 114/206 (55%), Gaps = 13/206 (6%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----------PNNIPFGINDSK 61 F E + GIDEVGRG L GPV VAA+I+ NI +DSK Sbjct: 16 FAYEKEYLSLGYKYICGIDEVGRGCLFGPVTVAAVIMPLELNNDVEVARENIVEEADDSK 75 Query: 62 KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 KIS KKREELY+KI S A+ S+ S + ID+ NI+ AT A+ +AV NL + P LI Sbjct: 76 KISAKKREELYDKIISKALCYSVYSVDAKTIDEINIYNATKLAMVNAVRNLNIKPDILLI 135 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 D + D+ + ++ KGD S SI ASI+AKV RDR+M + Y Y + GY Sbjct: 136 DAVKL--DIDIKQCSITKGDFKSYSIGCASIVAKVERDRMMNELPEVYQKYKVAKNKGYG 193 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206 T +H + I+ G S +HR +F P+++ Sbjct: 194 TKEHMKAIEMYGASDMHRYSFEPIKS 219 >gi|82750847|ref|YP_416588.1| ribonuclease HII [Staphylococcus aureus RF122] gi|97189311|sp|Q2YXM2|RNH2_STAAB RecName: Full=Ribonuclease HII; Short=RNase HII gi|82656378|emb|CAI80797.1| ribonuclease HII [Staphylococcus aureus RF122] Length = 255 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E +++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILKENPNAIICGIDEVGRGPLAGPVVACAPILNSNHNYLGLDDSKKVPVTK 115 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAFAFGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLL 233 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 I + G HR +F P+++L Sbjct: 234 AIDDIGIMKEHRKSFEPIKSL 254 >gi|254455368|ref|ZP_05068797.1| ribonuclease HII [Candidatus Pelagibacter sp. HTCC7211] gi|207082370|gb|EDZ59796.1| ribonuclease HII [Candidatus Pelagibacter sp. HTCC7211] Length = 190 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 82/184 (44%), Positives = 109/184 (59%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M +AG+DEVGRG+L GPV AA+IL+ N + DSK IS KRE L I ++I Sbjct: 1 MKIIAGVDEVGRGSLIGPVYAAAVILNKNIDKKLLKDSKTISKIKRELLSNYIKKNSIWV 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I AS + IDK NI +A+L A+ A++ L+ P LIDG +P+ A+IKGD Sbjct: 61 IGKASVKEIDKINILQASLLAMKRAIKKLKKKPTQILIDGNKVPDIKNYNLKAIIKGDKK 120 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SI+AASIIAKV RD+ + K Y +D + GY T +H + IK+ G S HR TF Sbjct: 121 IPSISAASIIAKVARDKFITSLAKTNKGYHWDQNFGYGTKQHLKAIKKLGISKHHRKTFS 180 Query: 203 PLRN 206 P+ N Sbjct: 181 PINN 184 >gi|17987825|ref|NP_540459.1| ribonuclease HII [Brucella melitensis bv. 1 str. 16M] gi|23501290|ref|NP_697417.1| ribonuclease HII [Brucella suis 1330] gi|161618362|ref|YP_001592249.1| ribonuclease HII [Brucella canis ATCC 23365] gi|225626901|ref|ZP_03784940.1| Ribonuclease HII [Brucella ceti str. Cudo] gi|225851926|ref|YP_002732159.1| ribonuclease HII [Brucella melitensis ATCC 23457] gi|254701198|ref|ZP_05163026.1| ribonuclease HII [Brucella suis bv. 5 str. 513] gi|254703743|ref|ZP_05165571.1| ribonuclease HII [Brucella suis bv. 3 str. 686] gi|254707877|ref|ZP_05169705.1| ribonuclease HII [Brucella pinnipedialis M163/99/10] gi|254709539|ref|ZP_05171350.1| ribonuclease HII [Brucella pinnipedialis B2/94] gi|254713044|ref|ZP_05174855.1| ribonuclease HII [Brucella ceti M644/93/1] gi|254716603|ref|ZP_05178414.1| ribonuclease HII [Brucella ceti M13/05/1] gi|256031033|ref|ZP_05444647.1| ribonuclease HII [Brucella pinnipedialis M292/94/1] gi|256044108|ref|ZP_05447019.1| ribonuclease HII [Brucella melitensis bv. 1 str. Rev.1] gi|256060525|ref|ZP_05450694.1| ribonuclease HII [Brucella neotomae 5K33] gi|256112906|ref|ZP_05453822.1| ribonuclease HII [Brucella melitensis bv. 3 str. Ether] gi|256159091|ref|ZP_05456917.1| ribonuclease HII [Brucella ceti M490/95/1] gi|256254436|ref|ZP_05459972.1| ribonuclease HII [Brucella ceti B1/94] gi|256264562|ref|ZP_05467094.1| ribonuclease HII [Brucella melitensis bv. 2 str. 63/9] gi|256368842|ref|YP_003106348.1| ribonuclease HII [Brucella microti CCM 4915] gi|260168165|ref|ZP_05754976.1| ribonuclease HII [Brucella sp. F5/99] gi|260563467|ref|ZP_05833953.1| ribonuclease HII [Brucella melitensis bv. 1 str. 16M] gi|260567002|ref|ZP_05837472.1| ribonuclease HII [Brucella suis bv. 4 str. 40] gi|261218402|ref|ZP_05932683.1| ribonuclease HII [Brucella ceti M13/05/1] gi|261221604|ref|ZP_05935885.1| ribonuclease HII [Brucella ceti B1/94] gi|261315368|ref|ZP_05954565.1| ribonuclease HII [Brucella pinnipedialis M163/99/10] gi|261317065|ref|ZP_05956262.1| ribonuclease HII [Brucella pinnipedialis B2/94] gi|261320749|ref|ZP_05959946.1| ribonuclease HII [Brucella ceti M644/93/1] gi|261324519|ref|ZP_05963716.1| ribonuclease HII [Brucella neotomae 5K33] gi|261751735|ref|ZP_05995444.1| ribonuclease HII [Brucella suis bv. 5 str. 513] gi|261754388|ref|ZP_05998097.1| ribonuclease HII [Brucella suis bv. 3 str. 686] gi|261757623|ref|ZP_06001332.1| ribonuclease HII [Brucella sp. F5/99] gi|265988103|ref|ZP_06100660.1| ribonuclease HII [Brucella pinnipedialis M292/94/1] gi|265990520|ref|ZP_06103077.1| ribonuclease HII [Brucella melitensis bv. 1 str. Rev.1] gi|265994348|ref|ZP_06106905.1| ribonuclease HII [Brucella melitensis bv. 3 str. Ether] gi|265997568|ref|ZP_06110125.1| ribonuclease HII [Brucella ceti M490/95/1] gi|61234184|sp|P0A4D9|RNH2_BRUME RecName: Full=Ribonuclease HII; Short=RNase HII gi|61234188|sp|P0A4E0|RNH2_BRUSU RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043568|sp|A9M8G2|RNH2_BRUC2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807968|sp|C0RH97|RNH2_BRUMB RecName: Full=Ribonuclease HII; Short=RNase HII gi|2984785|gb|AAC08032.1| ribonuclease HII [Brucella melitensis] gi|17983553|gb|AAL52723.1| ribonuclease hii [Brucella melitensis bv. 1 str. 16M] gi|23347178|gb|AAN29332.1| ribonuclease HII [Brucella suis 1330] gi|161335173|gb|ABX61478.1| Ribonuclease HII [Brucella canis ATCC 23365] gi|225618558|gb|EEH15601.1| Ribonuclease HII [Brucella ceti str. Cudo] gi|225640291|gb|ACO00205.1| Ribonuclease HII [Brucella melitensis ATCC 23457] gi|255999000|gb|ACU47399.1| ribonuclease HII [Brucella microti CCM 4915] gi|260153483|gb|EEW88575.1| ribonuclease HII [Brucella melitensis bv. 1 str. 16M] gi|260156520|gb|EEW91600.1| ribonuclease HII [Brucella suis bv. 4 str. 40] gi|260920188|gb|EEX86841.1| ribonuclease HII [Brucella ceti B1/94] gi|260923491|gb|EEX90059.1| ribonuclease HII [Brucella ceti M13/05/1] gi|261293439|gb|EEX96935.1| ribonuclease HII [Brucella ceti M644/93/1] gi|261296288|gb|EEX99784.1| ribonuclease HII [Brucella pinnipedialis B2/94] gi|261300499|gb|EEY03996.1| ribonuclease HII [Brucella neotomae 5K33] gi|261304394|gb|EEY07891.1| ribonuclease HII [Brucella pinnipedialis M163/99/10] gi|261737607|gb|EEY25603.1| ribonuclease HII [Brucella sp. F5/99] gi|261741488|gb|EEY29414.1| ribonuclease HII [Brucella suis bv. 5 str. 513] gi|261744141|gb|EEY32067.1| ribonuclease HII [Brucella suis bv. 3 str. 686] gi|262552036|gb|EEZ08026.1| ribonuclease HII [Brucella ceti M490/95/1] gi|262765461|gb|EEZ11250.1| ribonuclease HII [Brucella melitensis bv. 3 str. Ether] gi|263001304|gb|EEZ13879.1| ribonuclease HII [Brucella melitensis bv. 1 str. Rev.1] gi|263094927|gb|EEZ18635.1| ribonuclease HII [Brucella melitensis bv. 2 str. 63/9] gi|264660300|gb|EEZ30561.1| ribonuclease HII [Brucella pinnipedialis M292/94/1] gi|326408425|gb|ADZ65490.1| ribonuclease HII [Brucella melitensis M28] gi|326538139|gb|ADZ86354.1| ribonuclease HII [Brucella melitensis M5-90] Length = 220 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 97/203 (47%), Positives = 137/203 (67%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 +P P F E + ++ + +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ Sbjct: 13 DLPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLT 72 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +RE LYE I + AI +S++S S + ID +I KA L+A+ AV L + P AL+DGR Sbjct: 73 AARREALYEIILTKAITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGR 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P LPC A++KGD S+SIAAASI+AKVTRDR+M A +P YG + H GY T K Sbjct: 133 DVPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQK 192 Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205 H+ I+ +GP +HR TF P++ Sbjct: 193 HRAAIESEGPVPGLHRYTFAPIK 215 >gi|167747194|ref|ZP_02419321.1| hypothetical protein ANACAC_01908 [Anaerostipes caccae DSM 14662] gi|167654154|gb|EDR98283.1| hypothetical protein ANACAC_01908 [Anaerostipes caccae DSM 14662] Length = 225 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 88/191 (46%), Positives = 113/191 (59%), Gaps = 4/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + GIDEVGRG AGPVV AA+IL + +NDSKK+S KKRE L Sbjct: 33 FSYEREYER--YSHICGIDEVGRGPFAGPVVAAAVILPRDCDILYLNDSKKVSPKKREAL 90 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y++I A+ + I AS + ID+ NI AT +A+ AV NL V P L D +IP + Sbjct: 91 YDEIYEKALAVGIGMASEKVIDEINILNATYEAMRTAVSNLPVKPDLLLNDAVTIP-GIG 149 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +IKGD+ S SIAAASI+AKVTRDR+M + YP Y F + GY T H + IKE Sbjct: 150 TEQVPIIKGDAKSASIAAASIVAKVTRDRMMEEYDQLYPQYQFAKNKGYGTKAHIEAIKE 209 Query: 191 KGPSCIHRLTF 201 G +HR +F Sbjct: 210 YGICTLHRKSF 220 >gi|170727606|ref|YP_001761632.1| ribonuclease HII [Shewanella woodyi ATCC 51908] gi|238688705|sp|B1KNS9|RNH2_SHEWM RecName: Full=Ribonuclease HII; Short=RNase HII gi|169812953|gb|ACA87537.1| Ribonuclease H [Shewanella woodyi ATCC 51908] Length = 213 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 87/188 (46%), Positives = 116/188 (61%), Gaps = 8/188 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DEVGRG L G VV AA+ILDPNN G+NDSKK++ KKRE L+ +I A+ I++ Sbjct: 21 AGVDEVGRGPLVGNVVTAAVILDPNNPITGLNDSKKLTEKKRELLFAEIHEKALCINVGH 80 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL-------PCQAFAVIK 138 A+ ID+ NI AT+ A+ AV L + P S L+DG P +A AV+K Sbjct: 81 ATPDEIDELNILHATMLAMQRAVAGLDIKPLSVLVDGNRTPAFYHGEETEDRIEAHAVVK 140 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD + +I+AASIIAKV RDR M + +YP YGF H GYPT H + ++ G HR Sbjct: 141 GDGLISAISAASIIAKVIRDREMDLLDMEYPQYGFAKHKGYPTKAHFEALELHGVLPEHR 200 Query: 199 LTFRPLRN 206 +FRP++ Sbjct: 201 KSFRPVKE 208 >gi|311694071|gb|ADP96944.1| ribonuclease HII [marine bacterium HP15] Length = 228 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 80/184 (43%), Positives = 113/184 (61%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDP+ G+ DSKK++ K+R LY++I A SI Sbjct: 17 LLAGVDEVGRGPLIGAVVTAAVILDPDRPIAGLADSKKLTEKRRNALYDQILEHAKAWSI 76 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 ID+ NI++AT+ A+ AV L V+P L+DG P+ + V+KGDS Sbjct: 77 GRCESHEIDRLNIYQATMLAMERAVSGLAVVPEYVLVDGNRCPK-WRWPSEPVVKGDSRV 135 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASIIAKVTRDR M ++P +G H GYPT H + ++ G + HR +FRP Sbjct: 136 AAISAASIIAKVTRDREMEALEARFPGFGLAQHKGYPTPVHLEALRRLGATIEHRRSFRP 195 Query: 204 LRNL 207 ++ + Sbjct: 196 VQEV 199 >gi|260655674|ref|ZP_05861147.1| ribonuclease HII [Jonquetella anthropi E3_33 E1] gi|260629591|gb|EEX47785.1| ribonuclease HII [Jonquetella anthropi E3_33 E1] Length = 195 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 75/183 (40%), Positives = 106/183 (57%), Gaps = 5/183 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS-S 78 +AG+DE GRG LAGPV+ AA+IL P G+ DSKK+S KKRE+L+ + Sbjct: 1 MILAGVDEAGRGPLAGPVMAAAVILSPEQKNVLVQSGLRDSKKLSAKKREKLFGLMQELG 60 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + + +AS + ID+ NI +ATL A+ AV L P +DG + A++ Sbjct: 61 VVWRLQAASRRRIDRMNILQATLWAMARAVNRLPATPDGVAVDGSQEIPGISLYQQAIVG 120 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD + I+AAS++AKV RDRLM + YP YG H GY TA+HQ+ + GP+ +HR Sbjct: 121 GDDLYPEISAASVVAKVVRDRLMTALDRLYPGYGLAQHKGYGTAQHQEALLRLGPTPLHR 180 Query: 199 LTF 201 +F Sbjct: 181 RSF 183 >gi|210622543|ref|ZP_03293236.1| hypothetical protein CLOHIR_01184 [Clostridium hiranonis DSM 13275] gi|210154178|gb|EEA85184.1| hypothetical protein CLOHIR_01184 [Clostridium hiranonis DSM 13275] Length = 256 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 88/196 (44%), Positives = 118/196 (60%), Gaps = 4/196 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E EK +AG+DE GRG LAGPVV A ++L GINDSKK+S KR EL+ Sbjct: 62 AYENEGYEKGYTYIAGVDEAGRGPLAGPVVAAVVVLKQGTKIPGINDSKKLSEDKRNELF 121 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I A+ I ++ ID++NI AT A+ A+ L+ P L D IP D+ Sbjct: 122 DIIKEEALDYGIGIVGNEEIDEYNILNATYMAMRKALNCLKKQPDYILADAVHIP-DVDI 180 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++IKGD+ S+SIAAASI+AKVTRD LM + YP+YGF H GY TA+H + I E Sbjct: 181 EQNSIIKGDAKSISIAAASILAKVTRDSLMYQYDEIYPEYGFAHHKGYGTAEHYKAIDEN 240 Query: 192 GPSCIHRLTFRPLRNL 207 G + IHR +F L+N+ Sbjct: 241 GITPIHRKSF--LKNV 254 >gi|302389636|ref|YP_003825457.1| RNase HII [Thermosediminibacter oceani DSM 16646] gi|302200264|gb|ADL07834.1| RNase HII [Thermosediminibacter oceani DSM 16646] Length = 237 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 90/192 (46%), Positives = 120/192 (62%), Gaps = 2/192 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E ++ E+ +AG+DE GRG LAGPVV AA+IL + +NDSK +S K+RE + Sbjct: 38 FARERLLSERGYRYIAGVDEAGRGPLAGPVVAAAVILPLDVFILKLNDSKLLSEKQREAV 97 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YE+I A+ ++ S +YID+HNI ATL A+ AV+ L V P L+D IP L Sbjct: 98 YEEIKQKAVAVNFSVVDEKYIDEHNILNATLHAMQKAVQGLSVKPDIVLVDALKIP-GLD 156 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 Q +I GD + SIAAASIIAKV RDR+M+ H+ YP Y F ++ GY T KH + IK+ Sbjct: 157 VQQENIIHGDRLCASIAAASIIAKVERDRIMKNYHELYPHYDFCNNKGYCTKKHVESIKK 216 Query: 191 KGPSCIHRLTFR 202 G S IHR +F Sbjct: 217 YGLSPIHRRSFS 228 >gi|110004283|emb|CAK98621.1| putative ribonuclease h II protein [Spiroplasma citri] Length = 207 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 81/196 (41%), Positives = 117/196 (59%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE E ++ N +AG DE GRG LAGP+VV+A+IL + + I DSKKI+ K+R +L Sbjct: 4 FEKEILISYPNTTILAGTDEAGRGCLAGPLVVSAVILPLDYVNDEIKDSKKITAKQRIKL 63 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++I S AI +I S ++ N +A++ + A++NL V L D + Sbjct: 64 ADEIMSIAISYTIEIISVAMFEELNPKQASIFGMQQAIDNLMVKSDIILTDAEKLGPSYN 123 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 Q A+IKGDS+S SI AASI+AKVTRD LM + YP Y F ++ GY T KH +++ Sbjct: 124 HQ--AIIKGDSLSQSIVAASILAKVTRDNLMLKFDQDYPQYDFKNNKGYGTKKHLLALQQ 181 Query: 191 KGPSCIHRLTFRPLRN 206 G + +HR T+RP+R Sbjct: 182 FGITSLHRKTYRPVRE 197 >gi|302670910|ref|YP_003830870.1| ribonuclease HII RnhB [Butyrivibrio proteoclasticus B316] gi|302395383|gb|ADL34288.1| ribonuclease HII RnhB [Butyrivibrio proteoclasticus B316] Length = 253 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 94/195 (48%), Positives = 127/195 (65%), Gaps = 5/195 (2%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +E E + + GIDEVGRG LAGPV AA+IL ++ + +NDSKK+S KK Sbjct: 58 EMKKYERENA----GLGLLCGIDEVGRGPLAGPVYAAAVILPTDSEIYYLNDSKKLSEKK 113 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 REELY+ I AI + I ++ + ID+ NI +AT +A+ AV +L V P LID IP Sbjct: 114 REELYDVIMDKAISVGIGYSTCERIDEINILQATYEAMTKAVNSLSVKPGGLLIDAVHIP 173 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + + ++IKGD+ S SIAAASIIAKVTRDR+M+ K+YP+YGFDS+ GY +A H Sbjct: 174 QLEEYKQISIIKGDAKSASIAAASIIAKVTRDRIMKDYAKEYPEYGFDSNKGYGSADHIA 233 Query: 187 VIKEKGPSCIHRLTF 201 +K+ GP IHR +F Sbjct: 234 ALKKYGPCPIHRRSF 248 >gi|320527486|ref|ZP_08028667.1| ribonuclease HII [Solobacterium moorei F0204] gi|320132199|gb|EFW24748.1| ribonuclease HII [Solobacterium moorei F0204] Length = 208 Score = 231 bits (589), Expect = 6e-59, Method: Composition-based stats. Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 8/193 (4%) Query: 19 REKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E WP + GIDE GRG LAGP+ VA ++ I DSK IS KKR+ L+E+ Sbjct: 11 YEHQYWPLEKLIIGIDEAGRGPLAGPLTVAGVVFPIGYENPDIYDSKSISEKKRDALFEQ 70 Query: 75 ITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A+ I S + IDK+NI++A A+ + L D + + + Sbjct: 71 IQEDALWFEIIQVSPEDIDKYNIYRADQLAMEQI--AIHSDAEIVLTDAMPLIIE-GKEI 127 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++KGD S+SIAAASI+AKVTRDR+M K+YP+YGF H GYPT +H + + G Sbjct: 128 IPLVKGDQKSISIAAASILAKVTRDRVMLEYDKEYPEYGFAKHKGYPTKQHMEALHTYGV 187 Query: 194 SCIHRLTFRPLRN 206 + IHR +F P+R Sbjct: 188 TKIHRKSFGPVRE 200 >gi|291459085|ref|ZP_06598475.1| ribonuclease HII [Oribacterium sp. oral taxon 078 str. F0262] gi|291418339|gb|EFE92058.1| ribonuclease HII [Oribacterium sp. oral taxon 078 str. F0262] Length = 247 Score = 231 bits (589), Expect = 6e-59, Method: Composition-based stats. Identities = 78/191 (40%), Positives = 113/191 (59%), Gaps = 8/191 (4%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 N+ + G+DE GRG LAGPVV A +L + + ++DSKK+S K+RE L+ +IT A+ Sbjct: 34 NLSLIGGVDEAGRGPLAGPVVAACCVLPKDALILYLDDSKKLSEKRRELLFPEITKKALA 93 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVEN----LQVIPRSALIDGRSIPEDLPCQAFAV 136 + + ID+ NI A+ +A+ ++ + L P L D +IP + + Sbjct: 94 FGVGIVGEKRIDEINILNASYEAMRLSILSVSSKLGRPPELLLNDAVTIP-GIEIPQLPI 152 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 I+GDS SLSIAAAS+IAKV RDRLM +++P YGF H GY TA H++ I KG I Sbjct: 153 IRGDSKSLSIAAASVIAKVIRDRLMLRYDREFPGYGFARHKGYGTALHREKILSKGLCRI 212 Query: 197 HRLTFRPLRNL 207 HR +F ++ L Sbjct: 213 HRRSF--VKKL 221 >gi|45644754|gb|AAS73142.1| predicted ribonuclease H [uncultured marine gamma proteobacterium EBAC20E09] Length = 180 Score = 231 bits (589), Expect = 6e-59, Method: Composition-based stats. Identities = 82/179 (45%), Positives = 103/179 (57%), Gaps = 3/179 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 +AG DEVGRG LAGPVV AA+IL + G+ DSKKIS KKRE L + I + + Sbjct: 2 IAGTDEVGRGCLAGPVVAAAVILKED--IPGLTDSKKISPKKREFLADLILEKSFFAYGV 59 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S+ IDK NI A+L A+ A+ NL V P L+DG + DL A+I GDS + Sbjct: 60 VSNNKIDKINILNASLLAMKRAILNLPVRPSMVLVDG-TFKPDLDIPMRAIIGGDSSENA 118 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKV RD LM +P Y + GY T KH + +K G IHR TF + Sbjct: 119 ISAASIIAKVYRDNLMIKYDSIFPVYDLKGNKGYGTKKHLEALKSFGHCEIHRTTFNGV 177 >gi|15606955|ref|NP_214337.1| RNase HII [Aquifex aeolicus VF5] gi|7227919|sp|O67768|RNH2_AQUAE RecName: Full=Ribonuclease HII; Short=RNase HII gi|2984206|gb|AAC07736.1| RNase HII [Aquifex aeolicus VF5] Length = 196 Score = 231 bits (589), Expect = 6e-59, Method: Composition-based stats. Identities = 80/196 (40%), Positives = 117/196 (59%), Gaps = 5/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + EK + VAG+DE GRG LAGPVV AA+IL P PF DSKK++ K+REE Sbjct: 2 LNYELELWEKGL-LVAGVDEAGRGPLAGPVVAAAVILPPFTEPFIKGDSKKLTKKEREEA 60 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YE+I + A+ + + ID+ NI +AT A+ A+++L+ + D + + Sbjct: 61 YEEIKNKALAVGTAVVDSAVIDRVNILRATKLAMKRALKDLKYHYDIVITDYVKLEGE-- 118 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++KGD SL+ A ASIIAKV RD++M I HK YPD+ F S+ GYP+ H + +++ Sbjct: 119 -NCMPLVKGDEKSLNCACASIIAKVIRDKIMEIYHKIYPDFNFASNKGYPSKTHLEKVEK 177 Query: 191 KGPSCIHRLTFRPLRN 206 + IHR +F PL+ Sbjct: 178 GEYTEIHRKSFSPLKK 193 >gi|119485462|ref|ZP_01619790.1| ribonuclease HII [Lyngbya sp. PCC 8106] gi|119457218|gb|EAW38344.1| ribonuclease HII [Lyngbya sp. PCC 8106] Length = 199 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 81/187 (43%), Positives = 109/187 (58%), Gaps = 5/187 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79 +AGIDEVGRGAL GPVV A+IL I G+ DSK++ R+ L ++I + A Sbjct: 3 QLIAGIDEVGRGALFGPVVAGAVILSDEAITALTAAGVRDSKQLRPPMRKRLAQEIRAMA 62 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + ++ AS Q ID+ NI +ATL A+ ++ L+ P LIDG DL VIK Sbjct: 63 LSCQVAVASVQEIDRLNILQATLLAMKRSILKLKPPPDLCLIDGNQPIRDLLIPQQTVIK 122 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD S IAAASI+AKV RD L+ KY +Y ++ GY T KH+Q ++ GPS HR Sbjct: 123 GDQTSTVIAAASIVAKVWRDELIVRLADKYREYDLSNNKGYGTKKHRQALQRYGPSRQHR 182 Query: 199 LTFRPLR 205 L+F P + Sbjct: 183 LSFAPCQ 189 >gi|297626589|ref|YP_003688352.1| ribonuclease HII [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922354|emb|CBL56926.1| Ribonuclease HII [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 211 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 75/196 (38%), Positives = 113/196 (57%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREEL 71 E + PVAG DE GRGA AGP+V AA+IL DP + ++DSK ++ ++RE Sbjct: 10 YEQALAASGFGPVAGADEAGRGACAGPLVAAAVILSEDPQDHIEDLHDSKTLTARRRERA 69 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +++I + A+ S+ D+ + +A L + A+ L P AL DG ++ LP Sbjct: 70 FDQIKAHALSWSVVCVGPAECDRLGMQEADLQGLRRALLRLDPSPGFALTDGFAV-AGLP 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + KGD + ++AASI+AKVTRDRLM A +++P YGF+ H GY T HQ+ ++ Sbjct: 129 VPGLGMWKGDRVCACVSAASIVAKVTRDRLMVRAAQQFPVYGFEIHKGYATKLHQERLEA 188 Query: 191 KGPSCIHRLTFRPLRN 206 GPS IHR ++ +R Sbjct: 189 LGPSAIHRRSYANVRR 204 >gi|17231824|ref|NP_488372.1| ribonuclease HII [Nostoc sp. PCC 7120] gi|39932442|sp|Q8YP68|RNH2_ANASP RecName: Full=Ribonuclease HII; Short=RNase HII gi|17133468|dbj|BAB76031.1| ribonuclease HII [Nostoc sp. PCC 7120] Length = 225 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 83/187 (44%), Positives = 116/187 (62%), Gaps = 5/187 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 VAG+DEVGRGAL GPVV A++IL + P I DSKK+SH +R +L ++I++ A Sbjct: 35 GLVAGVDEVGRGALFGPVVAASVILPASAFPHLMTAEIKDSKKLSHSRRVQLAQQISTLA 94 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 I I A+ ID+ NI +ATL A+ +V+ L++ P LIDG +DL ++K Sbjct: 95 IDWRIGYATTAEIDRINILQATLLAMKRSVKKLKLQPILCLIDGNQPVQDLLMLQQTIVK 154 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD SL+IAAASI+AKV RD L++ KYP Y S+ GY + KH + + G S +HR Sbjct: 155 GDERSLNIAAASIMAKVWRDDLIQRLATKYPMYDLKSNKGYGSKKHLLALAQHGASPLHR 214 Query: 199 LTFRPLR 205 +FRP + Sbjct: 215 QSFRPCQ 221 >gi|29840412|ref|NP_829518.1| ribonuclease HII [Chlamydophila caviae GPIC] gi|33301616|sp|Q822M7|RNH2_CHLCV RecName: Full=Ribonuclease HII; Short=RNase HII gi|29834761|gb|AAP05396.1| ribonuclease HII [Chlamydophila caviae GPIC] Length = 212 Score = 230 bits (588), Expect = 8e-59, Method: Composition-based stats. Identities = 90/196 (45%), Positives = 120/196 (61%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E V + +AG+DEVGRG LAGPVV A IL I G+NDSKK++ K+R ++ + Sbjct: 18 FEEEVYGEGFSIIAGVDEVGRGPLAGPVVAGACILPRGKIFAGVNDSKKLTPKERGKIRD 77 Query: 74 KITSS--AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + I S + ID+ NI +AT +A+ A+ NL V P LIDG +P +PC Sbjct: 78 ILLNDPDVCYGIGVVSVERIDEINILEATKEAMAKAIANLSVHPDFLLIDGLHLPHKIPC 137 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGDS S SIAAASIIAK RD LMR H++YP+YGFD H GY TA H ++ Sbjct: 138 K--KIIKGDSKSASIAAASIIAKEYRDDLMRELHQRYPNYGFDKHKGYGTAAHLAALRAF 195 Query: 192 GPSCIHRLTFRPLRNL 207 GP HR +F P+R + Sbjct: 196 GPCDCHRKSFAPIRQV 211 >gi|326204815|ref|ZP_08194669.1| Ribonuclease H [Clostridium papyrosolvens DSM 2782] gi|325985027|gb|EGD45869.1| Ribonuclease H [Clostridium papyrosolvens DSM 2782] Length = 255 Score = 230 bits (588), Expect = 8e-59, Method: Composition-based stats. Identities = 87/195 (44%), Positives = 120/195 (61%), Gaps = 4/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + +AG+DE GRG LAGPVV AA++L G+NDSKK+S +RE+L++ Sbjct: 62 FERQAISEGFDYIAGVDEAGRGPLAGPVVAAAVVLPKGLTIEGVNDSKKLSEAQREKLFD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I A+ IS +YID+ NI AT A+ A+ L I L+D S+ +++ + Sbjct: 122 EIKEKALSYGISVVDEKYIDEVNILNATKMAMTEALNRLDPIADCILLDAVSL-DNISTK 180 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +IKGDS+SLSIAAASI+AKVTRDRL+ KYP YGF +H GY T +H IK+ G Sbjct: 181 QVPIIKGDSLSLSIAAASILAKVTRDRLLMEYDAKYPQYGFAAHKGYGTPQHISAIKKFG 240 Query: 193 PSCIHRLTFRPLRNL 207 IHRL+F ++N Sbjct: 241 LCPIHRLSF--VKNF 253 >gi|303241143|ref|ZP_07327651.1| Ribonuclease H [Acetivibrio cellulolyticus CD2] gi|302591270|gb|EFL61010.1| Ribonuclease H [Acetivibrio cellulolyticus CD2] Length = 260 Score = 230 bits (588), Expect = 8e-59, Method: Composition-based stats. Identities = 93/190 (48%), Positives = 114/190 (60%), Gaps = 2/190 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E +AGIDE GRG LAGPVV AA+IL N G+NDSKK+S K+REELY Sbjct: 66 RFEKEAYVMGAKFIAGIDEAGRGPLAGPVVAAAVILPENVFINGLNDSKKLSEKQREELY 125 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 IT AI + + ID+ NI AT A+ AVE L+V P LID + + L Sbjct: 126 SIITEKAIAYDVGIVDEKVIDELNILNATKMAMEIAVEGLKVKPDILLIDAVKL-DSLKI 184 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++IKGD++S+SIAAASIIAKVTRDR + YPDYGF H GY T +H IK+ Sbjct: 185 KQESIIKGDALSISIAAASIIAKVTRDRYIDQMDSVYPDYGFRKHKGYGTKEHIDAIKKF 244 Query: 192 GPSCIHRLTF 201 G IHR TF Sbjct: 245 GICPIHRTTF 254 >gi|323339885|ref|ZP_08080154.1| ribonuclease HII [Lactobacillus ruminis ATCC 25644] gi|323092758|gb|EFZ35361.1| ribonuclease HII [Lactobacillus ruminis ATCC 25644] Length = 256 Score = 230 bits (588), Expect = 8e-59, Method: Composition-based stats. Identities = 83/197 (42%), Positives = 120/197 (60%), Gaps = 3/197 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 +LE + V GIDEVGRG LAGPV+ +IL + +NDSK+++ +KRE+ Sbjct: 58 RLKLERAYWNFGIENVGGIDEVGRGPLAGPVIACCVILPHDFDLIDVNDSKQLTAEKREK 117 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY I AI + I ++ ID+ NI++A A+ AVE+L++ P LID I D+ Sbjct: 118 LYGLILERAIDVGIGCVDNRMIDRINIYEAARVAMKQAVESLRIKPEQLLIDAMQIETDI 177 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +IKGD+ S SI+AASI+AKV RD LM+ + YP YGF + GY T +H ++ Sbjct: 178 P--QKKLIKGDAKSASISAASIVAKVNRDHLMQFYDRIYPGYGFSKNDGYGTKEHLAGLE 235 Query: 190 EKGPSCIHRLTFRPLRN 206 + GP IHR+TF P+++ Sbjct: 236 KLGPCPIHRMTFEPIKS 252 >gi|300776110|ref|ZP_07085969.1| ribonuclease H [Chryseobacterium gleum ATCC 35910] gi|300505243|gb|EFK36382.1| ribonuclease H [Chryseobacterium gleum ATCC 35910] Length = 194 Score = 230 bits (588), Expect = 8e-59, Method: Composition-based stats. Identities = 80/190 (42%), Positives = 117/190 (61%), Gaps = 1/190 (0%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 +E + N++ AG DEVGRG L+GPVV AA+ILD +NDSKK++ K R EL Sbjct: 1 MELIKNWSNLYIEAGCDEVGRGCLSGPVVAAAVILDEGFEQNLVNDSKKLTFKTRMELDS 60 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I + +I+ +ID+HNI A++ A++ A++ L + P L+DG Sbjct: 61 YIKDNVKNYAIAELPASFIDEHNILNASIHAMHRALDKLTITPELILVDGNKFHPYNYIP 120 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +IKGDS LSIAAASI+AK RD+LM H+++P+YG+D++ GY T KHQ+ + + G Sbjct: 121 HQCIIKGDSKVLSIAAASILAKNYRDKLMMQLHEEHPEYGWDTNFGYATKKHQEALIKHG 180 Query: 193 PSCIHRLTFR 202 P+ HR +FR Sbjct: 181 PTIYHRQSFR 190 >gi|162447204|ref|YP_001620336.1| ribonuclease HII [Acholeplasma laidlawii PG-8A] gi|189043526|sp|A9NF30|RNH2_ACHLI RecName: Full=Ribonuclease HII; Short=RNase HII gi|161985311|gb|ABX80960.1| ribonuclease HII [Acholeplasma laidlawii PG-8A] Length = 202 Score = 230 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 87/198 (43%), Positives = 115/198 (58%), Gaps = 4/198 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 + E + +K + G+DE GRG LAGPVV AA+I + INDSK +S KKRE Sbjct: 5 NLAFEKALYDKGYTYICGVDEAGRGPLAGPVVAAAVIFEKGFYHEDINDSKTLSAKKRET 64 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+E I A+ I +S +H+ IDK NI +A A+ A+ L++ P+ AL D I Sbjct: 65 LFELIKQHALAIGVSVVNHEVIDKINILEAARHAMEDAISKLKIKPQYALTDHMDIK--- 121 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++ GD +S+SIAAASIIAKVTRD+LM + YP YGF H GY T KH + + Sbjct: 122 GIPYTSIKHGDQLSISIAAASIIAKVTRDKLMVDYDEVYPQYGFKDHKGYGTRKHLEALN 181 Query: 190 EKGPSCIHRLTFRPLRNL 207 G S IHR TF P+ L Sbjct: 182 LYGVSPIHRKTFAPVAKL 199 >gi|294781869|ref|ZP_06747201.1| ribonuclease HII [Fusobacterium sp. 1_1_41FAA] gi|294481680|gb|EFG29449.1| ribonuclease HII [Fusobacterium sp. 1_1_41FAA] Length = 217 Score = 230 bits (587), Expect = 9e-59, Method: Composition-based stats. Identities = 85/191 (44%), Positives = 118/191 (61%), Gaps = 7/191 (3%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKIT 76 + + V G+DE GRG LAGPVV AA+IL + INDSKK++ KKRE+LY+ I Sbjct: 7 LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKQYSEELDEINDSKKLTEKKREKLYDIIL 66 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPC 131 ++ +++ AS + IDK NI A A+ A+++L+ + L+DG ++ Sbjct: 67 NNFNVAVGIASVEEIDKLNILNADFLAMRRALKDLEKFYETKKDYIVLVDGNLKIKEYEG 126 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + F ++KGD+ SLSIAAASIIAKVTRDR+M+ KYPDY F+ + GY T KH + IK K Sbjct: 127 KQFPIVKGDAKSLSIAAASIIAKVTRDRIMKDLGLKYPDYDFEKNKGYGTKKHVEAIKTK 186 Query: 192 GPSC-IHRLTF 201 G IHR F Sbjct: 187 GVLKNIHRKVF 197 >gi|300771702|ref|ZP_07081577.1| ribonuclease H [Sphingobacterium spiritivorum ATCC 33861] gi|300761691|gb|EFK58512.1| ribonuclease H [Sphingobacterium spiritivorum ATCC 33861] Length = 198 Score = 230 bits (587), Expect = 9e-59, Method: Composition-based stats. Identities = 74/177 (41%), Positives = 98/177 (55%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+I + +NDSKK+S KKR L I A+ +++S Sbjct: 13 AGCDEAGRGCLAGPVFAAAVIFPKDYHHDLLNDSKKLSEKKRMALRPIIEQEALAFAVAS 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NIH A+ A++ A++ LQV ++DG +IKGD LS Sbjct: 73 VSAEEIDKINIHNASYLAMHRALDQLQVKAEYIIVDGNRFIPYPEVSHTCIIKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD M +P Y + + GYPT KH+ + G + HR TFR Sbjct: 133 IAAASILAKTYRDEYMESIACDFPAYDWLQNKGYPTVKHRNAVLAYGLTPHHRKTFR 189 >gi|317473605|ref|ZP_07932894.1| ribonuclease HII [Anaerostipes sp. 3_2_56FAA] gi|316898895|gb|EFV20920.1| ribonuclease HII [Anaerostipes sp. 3_2_56FAA] Length = 225 Score = 230 bits (587), Expect = 9e-59, Method: Composition-based stats. Identities = 90/191 (47%), Positives = 113/191 (59%), Gaps = 4/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + GIDEVGRG AGPVV AA+IL + +NDSKKIS KKRE L Sbjct: 33 FSYEREYER--YSHICGIDEVGRGPFAGPVVAAAVILPRDCDILYLNDSKKISPKKREAL 90 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+KI A+ + I AS + ID+ NI AT +A+ AV NL V P L D +IP + Sbjct: 91 YDKIYEKALAVGIGMASEKVIDEINILNATYEAMRTAVSNLPVEPDLLLNDAVTIP-GIG 149 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +IKGD+ S SIAAASI+AKVTRDR+M + YP Y F + GY T H + IKE Sbjct: 150 TEQVPIIKGDAKSASIAAASIVAKVTRDRMMEEYDQLYPQYQFAKNKGYGTKAHIEAIKE 209 Query: 191 KGPSCIHRLTF 201 G +HR +F Sbjct: 210 YGICTLHRKSF 220 >gi|254797053|ref|YP_003081891.1| ribonuclease HII [Neorickettsia risticii str. Illinois] gi|254590300|gb|ACT69662.1| ribonuclease HII [Neorickettsia risticii str. Illinois] Length = 195 Score = 230 bits (587), Expect = 9e-59, Method: Composition-based stats. Identities = 78/194 (40%), Positives = 110/194 (56%), Gaps = 4/194 (2%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77 R+ +AG+DEVGRG LAGPVV A+IL N G DSK +S R YEKI S Sbjct: 3 YRKSENGLIAGVDEVGRGCLAGPVVACAVILTENLAIPG--DSKVLSPAARLSWYEKIMS 60 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC--QAFA 135 ++ +I ++ + I+ NI ATL A+ A+E L V+P + LIDGR I + + + Sbjct: 61 NSYNAIGMSTVKEIETMNILNATLLAMERALERLPVVPTTVLIDGRDIINNAAKYKEVKS 120 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V+ GD I I AASI+AKVTRDR M YP Y + + GY T +H + + + G + Sbjct: 121 VVSGDKIYEEIKAASIVAKVTRDRWMEELDLTYPYYRWRFNKGYGTKEHLEALAKYGVTD 180 Query: 196 IHRLTFRPLRNLSV 209 HR F P++ + + Sbjct: 181 HHRRKFAPVKRMLL 194 >gi|323135966|ref|ZP_08071049.1| Ribonuclease H [Methylocystis sp. ATCC 49242] gi|322399057|gb|EFY01576.1| Ribonuclease H [Methylocystis sp. ATCC 49242] Length = 204 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 94/198 (47%), Positives = 133/198 (67%), Gaps = 2/198 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F LE +R + +WPVAG+DEVGRG LAGPV AA+ILDP +P G+NDSK + ++RE Sbjct: 6 PDFRLEGRLRRQGVWPVAGVDEVGRGPLAGPVAAAAVILDPARLPLGVNDSKALGPRERE 65 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +E+I S+A +S++ + ID NI +A+L A+ AV L + P L+DGR P Sbjct: 66 AAFERILSTAQAVSVAFVTPPEIDAMNIRQASLAAMARAVAGLSLAPAFVLVDGRD-PPP 124 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L C A++KGD+++LSIAAASI+AKV RD +MR YPDYGF+++ GY +H + Sbjct: 125 LACHCRAIVKGDALALSIAAASIVAKVARDGMMRRLAAAYPDYGFETNAGYGARRHLDAL 184 Query: 189 KEKGPSCIHRLTFRPLRN 206 + GP+ +HR +F PLR+ Sbjct: 185 ERIGPTPVHRFSFAPLRD 202 >gi|329121228|ref|ZP_08249855.1| ribonuclease HII [Dialister micraerophilus DSM 19965] gi|327470162|gb|EGF15625.1| ribonuclease HII [Dialister micraerophilus DSM 19965] Length = 264 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 84/199 (42%), Positives = 128/199 (64%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + +E+ ++ + V GIDEVGRG LAGPV VAA+IL P+ +NDSKK+S +KRE + Sbjct: 56 YAVESEFYKQGIQYVVGIDEVGRGPLAGPVTVAAVILKPHWFIENLNDSKKVSKEKREII 115 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +K+ A+ ISI+ S + ID NI++AT+ A+Y AV+ L++ P++ ++D P Sbjct: 116 SKKVHEEALAISITDLSVEEIDTLNIYQATMLAMYQAVKKLEIKPQAVIVDAM--PLHFQ 173 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++I GDS S S+AAASI+AKV RD +M K YP Y F+ + GY T KH + I E Sbjct: 174 VPCKSLIHGDSKSASVAAASIVAKVHRDHIMDEYAKIYPGYDFEDNKGYGTKKHMEAIYE 233 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR ++ P++++ + Sbjct: 234 LGITPIHRKSYEPVKSIVL 252 >gi|294625960|ref|ZP_06704572.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666389|ref|ZP_06731635.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599755|gb|EFF43880.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603831|gb|EFF47236.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 248 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 83/200 (41%), Positives = 125/200 (62%), Gaps = 2/200 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHK 66 + P F+ + ++ +AG+DE GRG LAGPV VAA++ DP G++DSK+++ + Sbjct: 19 QSPLFDQSQIPNVESRRLIAGVDEAGRGPLAGPVAVAAVVFDPGKPRINGLDDSKQLTAE 78 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +RE+LY +I A+ S+ + ID+ NI++AT+ + AVE + + A IDG + Sbjct: 79 RREQLYARIVDRALAWSVVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRV 138 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P+ LPC A A+I GD++ +I AASI+AKVTRDRLM H ++P+Y FD H GY T H Sbjct: 139 PKGLPCPAEALIGGDALDRAIMAASIVAKVTRDRLMHELHARHPEYRFDQHKGYSTPVHL 198 Query: 186 QVIKEKGPSCIHRLTFRPLR 205 ++ GP HR +F P+R Sbjct: 199 AALQTHGPCPQHRRSFAPVR 218 >gi|282883154|ref|ZP_06291753.1| ribonuclease HII [Peptoniphilus lacrimalis 315-B] gi|281296966|gb|EFA89463.1| ribonuclease HII [Peptoniphilus lacrimalis 315-B] Length = 205 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 84/196 (42%), Positives = 114/196 (58%), Gaps = 9/196 (4%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E R+K +AGIDEVGRG+L G V+ AII+ ++ G+NDSKK++ KKR+ELY Sbjct: 5 AYEKDYRKKGSKLIAGIDEVGRGSLFGDVLSCAIIMKEDSNIEGVNDSKKLTAKKRKELY 64 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALIDGRSI 125 KI ++ + I A + IDK NI AT ++ A+ENL+ V+P LID +I Sbjct: 65 NKILEDSLAVGIGRADAKTIDKLNIKMATHLSMVRAIENLRDSQGNLVVPDLVLIDAENI 124 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 + ++IKGD SIA ASIIAKV RD L YP YG + H GY T H+ Sbjct: 125 ETTIF--QHSIIKGDENCYSIACASIIAKVYRDSLCDKWATIYPGYGIEKHKGYGTKFHR 182 Query: 186 QVIKEKGPSCIHRLTF 201 + +K GPS +HR +F Sbjct: 183 EALKAYGPSPMHRKSF 198 >gi|146299683|ref|YP_001194274.1| ribonuclease HII [Flavobacterium johnsoniae UW101] gi|189043596|sp|A5FIL7|RNH2_FLAJO RecName: Full=Ribonuclease HII; Short=RNase HII gi|146154101|gb|ABQ04955.1| Ribonuclease H [Flavobacterium johnsoniae UW101] Length = 221 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 70/209 (33%), Positives = 102/209 (48%), Gaps = 21/209 (10%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 + G DE GRG LAGPV AA+IL +NDSK++S K R L I Sbjct: 3 QLNYSGFTLETGTDEAGRGCLAGPVTAAAVILPSVFENNILNDSKQLSEKARALLKPIIE 62 Query: 77 SSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS----------- 124 A+ S++ ID+ NI A++ + + L+ IP ++DG Sbjct: 63 EQALCFSVTHLFPDEIDEINILNASMKGMQECILKLKHIPEYIIVDGNRSLNAKLGLKNT 122 Query: 125 ---------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 I ++IKGD+ LSIAAASI+AK RD M H+++P Y + Sbjct: 123 FGKQFSKEEIELLKSIPNQSIIKGDAKFLSIAAASILAKTYRDEYMDQIHEEFPMYNWKQ 182 Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 + GYPT +H++ IK+ G + HR++FR L Sbjct: 183 NKGYPTKEHREAIKKYGTTKYHRMSFRLL 211 >gi|126666166|ref|ZP_01737146.1| ribonuclease HII [Marinobacter sp. ELB17] gi|126629488|gb|EBA00106.1| ribonuclease HII [Marinobacter sp. ELB17] Length = 217 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 81/183 (44%), Positives = 110/183 (60%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG L G VV AA+IL+P + DSKK+S KKR +L+++I A S+ Sbjct: 18 LLAGVDEVGRGPLIGAVVTAAVILNPARPIKDLADSKKLSEKKRNQLFDEIIEKATAWSL 77 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + ID+ NI +AT+ A+ AVE L P L+DG P D A AV+KGD Sbjct: 78 GRCEAEEIDRLNIFQATMVAMTRAVEGLNPQPEYVLVDGNRCP-DWRWPAAAVVKGDMRI 136 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKVTRDR ++ + YP YG H GYPT H + + G + HR +FRP Sbjct: 137 AAISAASILAKVTRDRELQALDQLYPGYGLAQHKGYPTTAHMEALARLGVTPQHRRSFRP 196 Query: 204 LRN 206 +R Sbjct: 197 VRE 199 >gi|304436821|ref|ZP_07396787.1| ribonuclease H [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370193|gb|EFM23852.1| ribonuclease H [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 259 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 89/197 (45%), Positives = 120/197 (60%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E E+ VAG+DE GRG LAGPV VAA+IL + ++DSKK+S K REEL Sbjct: 52 YAYERCAAERGHCIVAGVDEAGRGPLAGPVAVAAVILPQEYLLLRLDDSKKLSEKVREEL 111 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YE+I S A+ + + ID+ NI +AT +Y AV L P+ LID ++P L Sbjct: 112 YERIVSDAVSYHVELIDAETIDRMNILEATRKGMYDAVAALLPTPQEVLIDAVALPH-LR 170 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +++KGD+ S SIAAASI+AKVTRDRLM + YP YGF H GY T +H I+ Sbjct: 171 MASQSIVKGDAKSASIAAASILAKVTRDRLMLTYDEAYPVYGFAKHKGYGTQEHIDAIRN 230 Query: 191 KGPSCIHRLTFRPLRNL 207 G +HR TF P+R++ Sbjct: 231 YGICPLHRKTFEPIRSM 247 >gi|330752106|emb|CBL87067.1| ribonuclease HII [uncultured Flavobacteria bacterium] Length = 194 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 103/179 (57%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL + +NDSKK++ K+R L I A+ +++ Sbjct: 12 AGTDEAGRGCLAGPVTAAAVILPADFNEPLLNDSKKLTEKQRFYLRPIIEKHAVAFAVAH 71 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + +D+ NI A + A++ A++ L+ P L+DG +I+GD + Sbjct: 72 CTPKKVDEINILNAAIKAMHKAIQKLKPTPIHILVDGNRFHPFKKIPHQCIIRGDGKYQN 131 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD LM KK+P Y + ++ GYPT KH++ I+ G + HR TFR L Sbjct: 132 IAAASILAKTYRDDLMLTLDKKHPKYDWKNNKGYPTKKHREAIRANGITSHHRKTFRLL 190 >gi|227535995|ref|ZP_03966044.1| ribonuclease H [Sphingobacterium spiritivorum ATCC 33300] gi|227244238|gb|EEI94253.1| ribonuclease H [Sphingobacterium spiritivorum ATCC 33300] Length = 198 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 73/177 (41%), Positives = 98/177 (55%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+I + +NDSKK+S KKR L I A+ +++S Sbjct: 13 AGCDEAGRGCLAGPVFAAAVIFPKDYHHDLLNDSKKLSEKKRMALRPIIEQEALAFAVAS 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NIH A+ A++ A++ L+V ++DG +IKGD LS Sbjct: 73 VSAEEIDKINIHNASYLAMHRALDQLKVKAEYIIVDGNRFIPYPEVSHTCIIKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD M +P Y + + GYPT KH+ + G + HR TFR Sbjct: 133 IAAASILAKTYRDEYMESIACDFPAYDWLQNKGYPTVKHRNAVLAYGLTPHHRKTFR 189 >gi|261881041|ref|ZP_06007468.1| ribonuclease HII [Prevotella bergensis DSM 17361] gi|270332223|gb|EFA43009.1| ribonuclease HII [Prevotella bergensis DSM 17361] Length = 226 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 102/206 (49%), Gaps = 23/206 (11%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + NDSK++S KKR L E+I A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVFAAAVILPKDYDNPDFNDSKQLSKKKRYALREQIIRDAVAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC-------------- 131 + ID+ NI A+ A++ A++ L V P + +IDG P Sbjct: 73 VTPAEIDRINILHASFLAMHRAIDQLAVRPEALIIDGNRFDPYKPLSENATEGRKERVVT 132 Query: 132 --------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 ++KGD +IAAASI+AK RD M H +YP Y ++S+ GYPT Sbjct: 133 RPDDPAVLPWQCIVKGDGKYQNIAAASILAKTFRDDYMDELHLQYPMYHWNSNKGYPTRI 192 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLSV 209 H++ I G + HR ++ L N + Sbjct: 193 HREAIARYGITPFHRKSYNLLGNRQL 218 >gi|254499206|ref|ZP_05111886.1| RNase H ribonuclease [Legionella drancourtii LLAP12] gi|254351596|gb|EET10451.1| RNase H ribonuclease [Legionella drancourtii LLAP12] Length = 187 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 82/184 (44%), Positives = 107/184 (58%), Gaps = 4/184 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG LAG VV AA+IL G+ DSKK++ KKR+ L +I A+ + Sbjct: 6 LIAGVDEVGRGPLAGAVVTAAVILKE--PIEGLADSKKLTPKKRKLLSLQIQERALAFAY 63 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID NIH+ATL A+ AVE L + P L+DG P L A+I+GDS+ Sbjct: 64 GRAEVDEIDALNIHQATLLAMRRAVEALPIKPDEVLVDGAHAPR-LAVPCRAIIQGDSLI 122 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RD M YP YGF H GYPT H++ + GP IHR ++ P Sbjct: 123 PEISAASILAKVLRDEEMEALDAIYPGYGFAGHKGYPTVAHREALVHLGPCVIHRRSYAP 182 Query: 204 LRNL 207 + L Sbjct: 183 VAAL 186 >gi|74316817|ref|YP_314557.1| RNase HII [Thiobacillus denitrificans ATCC 25259] gi|97189444|sp|Q3SKM7|RNH2_THIDA RecName: Full=Ribonuclease HII; Short=RNase HII gi|74056312|gb|AAZ96752.1| ribonuclease H [Thiobacillus denitrificans ATCC 25259] Length = 204 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 80/183 (43%), Positives = 109/183 (59%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + G+DE GRG LAGPVV AA++LDP G+ DSKK++ RE L ++I + A+ ++ Sbjct: 16 LCGVDEAGRGPLAGPVVAAAVMLDPKRPIKGLRDSKKLTPAARERLADEIRARALAWCVA 75 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID+ NI AT+ A+ AV + P +DG PE ++ AV++GD Sbjct: 76 EASVAEIDRLNILHATMLAMQRAVAGMSHAPDDVWVDGDRCPE-WTWRSQAVVQGDDKVA 134 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AK RD LMR H+ YP YGF H+GY TA H +K G HR +F P+ Sbjct: 135 AIAAASILAKTVRDELMRGLHEAYPLYGFAQHMGYATAAHLAALKANGACPHHRRSFAPV 194 Query: 205 RNL 207 R L Sbjct: 195 RLL 197 >gi|311748115|ref|ZP_07721900.1| ribonuclease HII [Algoriphagus sp. PR1] gi|126574759|gb|EAZ79140.1| ribonuclease HII [Algoriphagus sp. PR1] Length = 200 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 85/185 (45%), Positives = 114/185 (61%), Gaps = 2/185 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DEVGRG LAGPVV AA+IL + INDSKK+ K+R++L E+I ++ ++ Sbjct: 14 AGCDEVGRGCLAGPVVAAAVILPSDYSNEWINDSKKLGKKQRQDLIEEIKEKSLSWKVAE 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS + ID+ NI A+ A+ A+E L+V P LIDG L VIKGD S Sbjct: 74 ASVEEIDQINILNASFLAMSRAIEGLEVSPEHLLIDGNRFKSHLTLPFTCVIKGDGKFAS 133 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL- 204 IAAASI+AKV RD LM ++P YG++ +VGYPT H++ I+E GP HR +F+ L Sbjct: 134 IAAASILAKVYRDELMEKLALEHPHYGWERNVGYPTKAHREGIREHGPCIWHRKSFQLLP 193 Query: 205 RNLSV 209 R L + Sbjct: 194 RQLDL 198 >gi|62185237|ref|YP_220022.1| ribonuclease HII [Chlamydophila abortus S26/3] gi|73917604|sp|Q5L5M0|RNH2_CHLAB RecName: Full=Ribonuclease HII; Short=RNase HII gi|62148304|emb|CAH64071.1| ribonuclease HII [Chlamydophila abortus S26/3] Length = 212 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 89/196 (45%), Positives = 119/196 (60%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E V + +AGIDEVGRG LAGPVV A IL + G+NDSKK++ K+R ++ + Sbjct: 18 FEEEVFHEGFSLIAGIDEVGRGPLAGPVVAGACILPRGKVFAGVNDSKKLTPKERGKIRD 77 Query: 74 KIT--SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + S + S + ID+ NI +AT +A+ A+ NL + P L+DG +P +PC Sbjct: 78 ILVNDSEVYYGLGVVSVERIDEINILEATKEAMAAAIANLPIHPDFLLVDGLHLPHKIPC 137 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGDS S SIAAASI+AK RD LMR H+ YPDYGFD H GY TA H +K Sbjct: 138 K--KIIKGDSKSASIAAASILAKEYRDDLMRELHQLYPDYGFDKHKGYGTAAHLAALKAF 195 Query: 192 GPSCIHRLTFRPLRNL 207 GP HR +F P+R + Sbjct: 196 GPCDCHRKSFAPVRQV 211 >gi|254448807|ref|ZP_05062264.1| ribonuclease HII [gamma proteobacterium HTCC5015] gi|198261648|gb|EDY85936.1| ribonuclease HII [gamma proteobacterium HTCC5015] Length = 202 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 93/182 (51%), Positives = 119/182 (65%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 +AG DE GRG LAG VV AA++LDP G+NDSKK+S K+RE LYE+I + A I+ Sbjct: 17 IAGADEAGRGPLAGSVVAAAVVLDPKRPIPGLNDSKKLSEKRREALYEEICAEASDWCIA 76 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID NI A++ A+ A+E LQ P ALIDG P D+ A A++KGD Sbjct: 77 RASVEEIDDLNILHASMLAMKRAIEGLQHPPEQALIDGNRCP-DVSMPAQAIVKGDGRVA 135 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I AASI+AKV RDR M + H+ YPDYGFD H GYPTA HQ+ +K GP+ HR +F P+ Sbjct: 136 CIGAASILAKVARDRDMLLLHEAYPDYGFDRHKGYPTALHQERLKALGPTEHHRRSFGPV 195 Query: 205 RN 206 + Sbjct: 196 KK 197 >gi|325916627|ref|ZP_08178890.1| RNase HII [Xanthomonas vesicatoria ATCC 35937] gi|325537181|gb|EGD08914.1| RNase HII [Xanthomonas vesicatoria ATCC 35937] Length = 241 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 83/185 (44%), Positives = 120/185 (64%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-I 81 VAG+DE GRG LAGPV VAA++ DP+ G++DSK+++ ++RE+LY +I A+ Sbjct: 31 RLVAGVDEAGRGPLAGPVAVAAVVFDPSKPRINGLDDSKQLTAERREQLYARIVDRALAW 90 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S+ + + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD+ Sbjct: 91 SVVLIASEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDA 150 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + SI AASI+AKVTRDRLM H ++P+Y FD H GY T H ++ GP HR +F Sbjct: 151 LDRSIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYATPVHLAALRSHGPCPQHRRSF 210 Query: 202 RPLRN 206 P+R Sbjct: 211 APVRR 215 >gi|253682672|ref|ZP_04863469.1| ribonuclease HII (RNase HII) [Clostridium botulinum D str. 1873] gi|253562384|gb|EES91836.1| ribonuclease HII (RNase HII) [Clostridium botulinum D str. 1873] Length = 269 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 81/199 (40%), Positives = 112/199 (56%), Gaps = 8/199 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKI 63 + ++ ++ N +AG DEVGRG LAGP+V AA+ILD + + INDSKKI Sbjct: 65 KTMYQFDSQYISTN-GYLAGCDEVGRGPLAGPIVAAAVILDLEFANNDKLILKINDSKKI 123 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 + REEL E I AI I+ + ID I + + +V L+V P AL DG Sbjct: 124 KPELREELAEIIKEKAISYCIAEIDNLEIDNKGIAWCNNEVLQRSVNGLRVKPNLALSDG 183 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 I ++ V+KGD+ S SIA ASIIAKV RD+LM+ + Y +Y FD ++GY T Sbjct: 184 YKI-KNCSIDNKFVVKGDAKSASIACASIIAKVHRDKLMQKYSEIYKEYAFDKNMGYGTK 242 Query: 183 KHQQVIKEKGPSCIHRLTF 201 +H IK+ G + IHR +F Sbjct: 243 EHIDSIKKYGYTPIHRKSF 261 >gi|21242160|ref|NP_641742.1| ribonuclease HII [Xanthomonas axonopodis pv. citri str. 306] gi|39932428|sp|Q8PML9|RNH2_XANAC RecName: Full=Ribonuclease HII; Short=RNase HII gi|21107575|gb|AAM36278.1| ribonuclease HII [Xanthomonas axonopodis pv. citri str. 306] Length = 244 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 81/184 (44%), Positives = 118/184 (64%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-I 81 +AG+DE GRG LAGPV VAA++ DP G++DSK+++ ++RE+LY +I A+ Sbjct: 31 RLIAGVDEAGRGPLAGPVAVAAVVFDPGKPRINGLDDSKQLTAERREQLYARIVDRALAW 90 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S+ + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD+ Sbjct: 91 SVVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDA 150 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + +I AASI+AKVTRDRLM H ++P+Y FD H GY T H ++ GP HR +F Sbjct: 151 LDRAIMAASIVAKVTRDRLMHELHTRHPEYRFDQHKGYSTPVHLAALQTHGPCPQHRRSF 210 Query: 202 RPLR 205 P+R Sbjct: 211 APVR 214 >gi|284047854|ref|YP_003398193.1| Ribonuclease H [Acidaminococcus fermentans DSM 20731] gi|283952075|gb|ADB46878.1| Ribonuclease H [Acidaminococcus fermentans DSM 20731] Length = 270 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 84/199 (42%), Positives = 126/199 (63%), Gaps = 4/199 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 +LE + M VAG DE GRG LAGP+V AA+IL + G+NDSKK++ +RE LY Sbjct: 60 DLERAFWARGMDQVAGCDEAGRGPLAGPLVTAAVILPHSIWLPGLNDSKKVTAARREILY 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP- 130 +I A+ +++S + ID+ NI++A A+ + +L+V P++A+ D P ++P Sbjct: 120 GEILEQAVSVTVSILGPREIDRLNIYQAAKTAMTLCLTHLKVRPQAAVTDAM--PLEIPG 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + ++ GDS S ++AAASIIAKVTRD LM ++YP YGF H GY TA+H Q I + Sbjct: 178 MEVEDLVHGDSRSAAVAAASIIAKVTRDHLMEDMDRQYPQYGFAKHKGYGTARHIQAILD 237 Query: 191 KGPSCIHRLTFRPLRNLSV 209 GP+ HR +F PL+++ + Sbjct: 238 CGPTPWHRRSFEPLKSMDL 256 >gi|312890316|ref|ZP_07749853.1| RNase HII [Mucilaginibacter paludis DSM 18603] gi|311297086|gb|EFQ74218.1| RNase HII [Mucilaginibacter paludis DSM 18603] Length = 198 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 70/177 (39%), Positives = 105/177 (59%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL P+ +NDSK+I + R EL +I A+ +++S Sbjct: 13 AGCDEAGRGCLAGPVFAAAVILPPDFEHGLLNDSKQIDEQTRYELRAEIEQKAVAFAVAS 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ++ ID+ NI A+ A++ A++ L + P +IDG + +I+GD S Sbjct: 73 VDNEEIDEINILNASFLAMHRAIDQLHIAPELLIIDGNRFNKYRAIPHHCIIQGDGKYFS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD M+ ++P+Y + ++ GYPT KH+ ++ E G + HR TFR Sbjct: 133 IAAASILAKTYRDDYMKKIALEHPEYDWHTNKGYPTIKHRNMVVELGYTPYHRRTFR 189 >gi|289670236|ref|ZP_06491311.1| ribonuclease HII [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 242 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 83/184 (45%), Positives = 119/184 (64%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-I 81 VAG+DE GRG LAGPV VAA++ DP+ G++DSK+++ ++RE+LY +I A+ Sbjct: 31 RLVAGVDEAGRGPLAGPVAVAAVVFDPSKPRINGLDDSKQLTAERREQLYARIVDRALAW 90 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S+ + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD+ Sbjct: 91 SVVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDA 150 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + +I AASI+AKVTRDRLM H ++P+Y FD H GY T H +K GP HR +F Sbjct: 151 LDRAIMAASIVAKVTRDRLMHELHTQHPEYRFDQHKGYSTPVHLAALKTHGPCPQHRRSF 210 Query: 202 RPLR 205 P+R Sbjct: 211 APVR 214 >gi|160892722|ref|ZP_02073512.1| hypothetical protein CLOL250_00252 [Clostridium sp. L2-50] gi|156865763|gb|EDO59194.1| hypothetical protein CLOL250_00252 [Clostridium sp. L2-50] Length = 257 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 91/191 (47%), Positives = 116/191 (60%), Gaps = 4/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE E + + GIDEVGRG LAGPVV AA+IL N +NDSK++S KKREEL Sbjct: 63 FEYERQ--HADCQYICGIDEVGRGPLAGPVVAAAVILPENCDILYLNDSKQLSEKKREEL 120 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y++IT A+ I A + ID+ NI A +A+ A+ L V P L D IPE + Sbjct: 121 YDEITEKAVAYGIGMADEKLIDQINILNADYEAMRIAIHKLAVKPDLLLNDAVRIPE-VE 179 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ S SIAAASIIAKVTRDRLM + YP YGF + GY + +H + +K Sbjct: 180 IPQVSIIKGDAKSASIAAASIIAKVTRDRLMVAYDEIYPGYGFAKNKGYGSKEHIEALKT 239 Query: 191 KGPSCIHRLTF 201 GP IHR +F Sbjct: 240 IGPCEIHRRSF 250 >gi|330752641|emb|CBL87585.1| ribonuclease HII [uncultured Flavobacteria bacterium] Length = 199 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 77/185 (41%), Positives = 108/185 (58%), Gaps = 1/185 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 R + GIDE GRG LAGPV AA+IL N I+DSKK+S KREEL + I + Sbjct: 5 RYSDYDLECGIDEAGRGCLAGPVTAAAVILKANFKHDLIDDSKKLSKIKREELSKIIKEN 64 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 +I SI + ID+ NI A++ A++ ++NL V P +IDG + VI Sbjct: 65 SIAYSIQFIDSRKIDEVNILNASILAMHKCIKNLSVKPEFLIIDGNRFKKYKDIPHETVI 124 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD L+IA+ASI+AK RD M+ KK+P+Y + + GYPT H++ IK+ G + H Sbjct: 125 KGDGKYLNIASASILAKHARDYYMQKISKKFPNYHWFKNNGYPTKHHKEAIKKHGLTKYH 184 Query: 198 RLTFR 202 R +F+ Sbjct: 185 RKSFK 189 >gi|225572008|ref|ZP_03780872.1| hypothetical protein RUMHYD_00302 [Blautia hydrogenotrophica DSM 10507] gi|225040541|gb|EEG50787.1| hypothetical protein RUMHYD_00302 [Blautia hydrogenotrophica DSM 10507] Length = 251 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 89/191 (46%), Positives = 118/191 (61%), Gaps = 4/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + GIDE GRG LAGPVV A+IL N +NDSKK+S +REEL Sbjct: 59 FAYEREYEHLGY--ICGIDEAGRGPLAGPVVAGAVILQKNCGILYLNDSKKLSAARREEL 116 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y +I A+ + + AS Q ID+ NI +AT +A+ A++ L++ P+ L D +IP + Sbjct: 117 YRQIVEEAVAVGVGYASPQRIDEINILQATYEAMREAIQKLKIKPQILLNDAVTIP-GVS 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 C +IKGD+ S SIAAASI+AKVTRDRLM + P+YGF SH GY A H + +K+ Sbjct: 176 CPQVPIIKGDAKSASIAAASIVAKVTRDRLMVEYDRLMPEYGFASHKGYGAAAHIEALKK 235 Query: 191 KGPSCIHRLTF 201 GPS IHR +F Sbjct: 236 YGPSPIHRKSF 246 >gi|227486581|ref|ZP_03916897.1| ribonuclease H [Anaerococcus lactolyticus ATCC 51172] gi|227235399|gb|EEI85414.1| ribonuclease H [Anaerococcus lactolyticus ATCC 51172] Length = 207 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 82/190 (43%), Positives = 118/190 (62%), Gaps = 4/190 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E++ + E +AGIDEVGRG LAGPVV A+I+ N+ G+ DSKK+S KK L Sbjct: 9 EIKKEIYET-YDLIAGIDEVGRGPLAGPVVTCAVIMKKNSHIEGVTDSKKLSRKKMLVLK 67 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 EKI + A+ +S A+ + ID+ NI +ATL A+ A+++L++ P LID I DLP Sbjct: 68 EKILADALAVSYGFANSRKIDQINIRQATLQAMKDALDHLEIRPDIVLIDAERIDTDLP- 126 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++KGD +I+ ASI+AKV RD +M K YP YGF+++ GY T H Q +++ Sbjct: 127 -QLNIVKGDLNEYAISCASILAKVRRDDIMINFSKIYPGYGFETNFGYGTKAHYQGLEQH 185 Query: 192 GPSCIHRLTF 201 G + IHR +F Sbjct: 186 GETPIHRQSF 195 >gi|148560173|ref|YP_001258413.1| ribonuclease HII [Brucella ovis ATCC 25840] gi|294851769|ref|ZP_06792442.1| ribonuclease HII [Brucella sp. NVSL 07-0026] gi|166225171|sp|A5VNW6|RNH2_BRUO2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|148371430|gb|ABQ61409.1| ribonuclease HII [Brucella ovis ATCC 25840] gi|294820358|gb|EFG37357.1| ribonuclease HII [Brucella sp. NVSL 07-0026] Length = 220 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 96/203 (47%), Positives = 136/203 (66%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 +P P F E + ++ + +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ Sbjct: 13 DLPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLT 72 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +RE LYE I + AI +S++S S + ID +I KA L+A+ AV L + P AL+DGR Sbjct: 73 AARREALYEIILTKAITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGR 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P L C A++KGD S+SIAAASI+AKVTRDR+M A +P YG + H GY T K Sbjct: 133 DVPPGLSCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQK 192 Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205 H+ I+ +GP +HR TF P++ Sbjct: 193 HRAAIESEGPVPGLHRYTFAPIK 215 >gi|299142243|ref|ZP_07035376.1| ribonuclease HII [Prevotella oris C735] gi|298576332|gb|EFI48205.1| ribonuclease HII [Prevotella oris C735] Length = 220 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 72/188 (38%), Positives = 102/188 (54%), Gaps = 11/188 (5%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL P+ +NDSKK+S ++R L E+I A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPPDYDNPALNDSKKLSVRQRYALREQIEHDALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-----DLP-----CQAFA 135 A+ + ID+ NI A+ A++ A++ L+ P + ++DG LP Sbjct: 73 ATPEEIDEINILHASFLAMHRALDQLKKRPEAVIVDGNHFDPYVVGRGLPNAGKQLPHTC 132 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 VIKGD +IAAASI+AK RD M K YP Y ++ + GYPT KH I E G Sbjct: 133 VIKGDGKYQNIAAASILAKTYRDDYMTEQAKLYPFYDWEKNKGYPTKKHYAGIAEHGICE 192 Query: 196 IHRLTFRP 203 +HR ++ Sbjct: 193 LHRRSYNT 200 >gi|150025268|ref|YP_001296094.1| ribonuclease HII [Flavobacterium psychrophilum JIP02/86] gi|189043597|sp|A6GYW0|RNH2_FLAPJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|149771809|emb|CAL43283.1| Ribonuclease HII [Flavobacterium psychrophilum JIP02/86] Length = 219 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 76/199 (38%), Positives = 105/199 (52%), Gaps = 21/199 (10%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL N +NDSK++S K RE+L I + AI S++ Sbjct: 13 AGTDEAGRGCLAGPVTAAAVILPENFESKILNDSKQLSEKTREQLKPIIEALAISFSVTH 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS--------------------I 125 ID+ NI A+L A+ V L P + DG I Sbjct: 73 LDPLIIDEINILNASLKAMQECVLQLNPTPLYIIADGNRPLLSKNSFKKCSGKIFTNREI 132 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 + ++IKGDS LSIAAAS++AK RD M H+++P Y + + GYPT +H+ Sbjct: 133 EILQSIPSSSIIKGDSKYLSIAAASVLAKTYRDEYMNTIHEEFPMYNWKKNKGYPTKEHR 192 Query: 186 QVIKEKGPSCIHRLTFRPL 204 + I++ G + HR+TFR L Sbjct: 193 EAIRKYGVTKYHRMTFRLL 211 >gi|19704706|ref|NP_604268.1| ribonuclease HII [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|39932432|sp|Q8RDX3|RNH2_FUSNN RecName: Full=Ribonuclease HII; Short=RNase HII gi|19715020|gb|AAL95567.1| Ribonuclease HII [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 215 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 84/207 (40%), Positives = 119/207 (57%), Gaps = 11/207 (5%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GIND 59 M I + P + + + V G+DE GRG LAGPVV AA+IL IND Sbjct: 1 MLMEEIMDNPLY-----LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKEYTEELDEIND 55 Query: 60 SKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-- 117 SKK++ KKRE+LY+ I + +++ ++ + IDK NI A A+ A+++L+ + Sbjct: 56 SKKLTEKKREKLYDIIMKNFDVAVGISTVEEIDKLNILNADFLAMRRALKDLKSLKNEKE 115 Query: 118 --ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 L+DG ++ + ++KGD+ SLSIAAASIIAKVTRDRLM+ YPDY F+ Sbjct: 116 YTVLVDGNLKIKEYIGKQLPIVKGDAKSLSIAAASIIAKVTRDRLMKDLANIYPDYSFEK 175 Query: 176 HVGYPTAKHQQVIKEKGPSC-IHRLTF 201 H GY T H + IK+KG +HR F Sbjct: 176 HKGYGTKTHIEAIKDKGAIEGVHRKVF 202 >gi|153954034|ref|YP_001394799.1| ribonuclease HII [Clostridium kluyveri DSM 555] gi|189043584|sp|A5N820|RNH2_CLOK5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|146346915|gb|EDK33451.1| Hypothetical protein CKL_1409 [Clostridium kluyveri DSM 555] Length = 288 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 87/192 (45%), Positives = 117/192 (60%), Gaps = 9/192 (4%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELYEKIT 76 N VAG DEVGRG LAGP+V AA+IL+ N + G+ DSKK++ K R EL + I Sbjct: 99 NYIYVAGTDEVGRGPLAGPIVAAAVILNLNYVEDKKLILGVKDSKKLTQKARYELSQTIK 158 Query: 77 SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 A+ SI+ +++ IDK I + + AV L++ L DG ++ ++LP + Sbjct: 159 EKALSYSIAVINNKEIDKRGISWCNNEVLRKAVLGLKLPVELVLSDGYAV-KNLPVRNEF 217 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 VIKGDS S+SIA+ASIIAKV RD LMR K Y +Y F S+ GY T +H IK+ G Sbjct: 218 VIKGDSKSVSIASASIIAKVYRDELMREYSKVYTEYNFQSNSGYGTKEHIGAIKKYGTCK 277 Query: 196 IHRLTFRPLRNL 207 IHRL+F LRN+ Sbjct: 278 IHRLSF--LRNI 287 >gi|89898164|ref|YP_515274.1| ribonuclease HII [Chlamydophila felis Fe/C-56] gi|123483565|sp|Q255A9|RNH2_CHLFF RecName: Full=Ribonuclease HII; Short=RNase HII gi|89331536|dbj|BAE81129.1| ribonuclease HII [Chlamydophila felis Fe/C-56] Length = 209 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 91/195 (46%), Positives = 117/195 (60%), Gaps = 4/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E V + +AG+DEVGRG LAGPVV A IL I G+NDSKK+S K+R + + Sbjct: 16 FEEEVFSEGFSIIAGVDEVGRGPLAGPVVAGACILPRGKIFAGVNDSKKLSPKERGRMRD 75 Query: 74 KITSS--AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + I S + ID+ NI +AT +A+ A+ NL V P L+DG +P +PC Sbjct: 76 ILVNDPDVYYGIGVVSVERIDEINILEATKEAMAVAIANLPVHPDFLLVDGLHLPHKIPC 135 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGDS SIAAASIIAK RD LMR H++YPDYGFD H GY TA H +K Sbjct: 136 K--KIIKGDSKVASIAAASIIAKEYRDDLMRELHQRYPDYGFDKHKGYGTAAHLAALKAF 193 Query: 192 GPSCIHRLTFRPLRN 206 GP HR +F P+R Sbjct: 194 GPCDCHRKSFAPIRR 208 >gi|58581586|ref|YP_200602.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae KACC10331] gi|75435665|sp|Q5H1F4|RNH2_XANOR RecName: Full=Ribonuclease HII; Short=RNase HII gi|58426180|gb|AAW75217.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae KACC10331] Length = 252 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 83/183 (45%), Positives = 119/183 (65%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DE GRG LAGPV VAA++ DPN G++DSK+++ ++RE+LY +I A+ S Sbjct: 42 LVAGVDEAGRGPLAGPVAVAAVVFDPNKPRINGLDDSKQLTAERREQLYARIVDRALSWS 101 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD++ Sbjct: 102 VVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDAL 161 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I AASI+AKVTRDRLM H ++P+Y FD H GY T H ++ GP HR +F Sbjct: 162 DRAIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYSTPMHLAALQTHGPCPQHRRSFA 221 Query: 203 PLR 205 P+R Sbjct: 222 PVR 224 >gi|219854648|ref|YP_002471770.1| hypothetical protein CKR_1305 [Clostridium kluyveri NBRC 12016] gi|219568372|dbj|BAH06356.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 290 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 87/192 (45%), Positives = 117/192 (60%), Gaps = 9/192 (4%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELYEKIT 76 N VAG DEVGRG LAGP+V AA+IL+ N + G+ DSKK++ K R EL + I Sbjct: 101 NYIYVAGTDEVGRGPLAGPIVAAAVILNLNYVEDKKLILGVKDSKKLTQKARYELSQTIK 160 Query: 77 SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 A+ SI+ +++ IDK I + + AV L++ L DG ++ ++LP + Sbjct: 161 EKALSYSIAVINNKEIDKRGISWCNNEVLRKAVLGLKLPVELVLSDGYAV-KNLPVRNEF 219 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 VIKGDS S+SIA+ASIIAKV RD LMR K Y +Y F S+ GY T +H IK+ G Sbjct: 220 VIKGDSKSVSIASASIIAKVYRDELMREYSKVYTEYNFQSNSGYGTKEHIGAIKKYGTCK 279 Query: 196 IHRLTFRPLRNL 207 IHRL+F LRN+ Sbjct: 280 IHRLSF--LRNI 289 >gi|118444390|ref|YP_878279.1| ribonuclease HII [Clostridium novyi NT] gi|189043585|sp|A0Q0X7|RNH2_CLONN RecName: Full=Ribonuclease HII; Short=RNase HII gi|118134846|gb|ABK61890.1| ribonuclease H [Clostridium novyi NT] Length = 269 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 87/205 (42%), Positives = 119/205 (58%), Gaps = 10/205 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKI 63 R +E + + +AG DEVGRG LAGP+V AA++LD N+ INDSKKI Sbjct: 65 RNMYEFDKKYIKSG-TYLAGADEVGRGPLAGPIVAAAVVLDLDIINDENLILRINDSKKI 123 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S + REEL + I A+ SI S + ID+ I + + +V NL+V P L DG Sbjct: 124 SFEVREELSKIIKERAVSYSIQEISSEEIDEKGIAWCNNEVLKRSVCNLKVDPDLVLSDG 183 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 I ++ V+KGD+ S SIA ASIIAKV RD LM KKYP+Y F+ ++GY T Sbjct: 184 YKI-KNCTINNEFVVKGDAKSASIACASIIAKVYRDNLMIEYSKKYPEYMFNKNMGYGTK 242 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 +H + IK+ G + IHR +F L+N+ Sbjct: 243 EHIEAIKKFGCTKIHRKSF--LKNI 265 >gi|88608875|ref|YP_506577.1| ribonuclease HII [Neorickettsia sennetsu str. Miyayama] gi|123491623|sp|Q2GD69|RNH2_NEOSM RecName: Full=Ribonuclease HII; Short=RNase HII gi|88601044|gb|ABD46512.1| ribonuclease HII [Neorickettsia sennetsu str. Miyayama] Length = 195 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 79/194 (40%), Positives = 111/194 (57%), Gaps = 4/194 (2%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77 R+ +AG+DEVGRG LAGPVV A+IL N G DSK +S R YE+I S Sbjct: 3 YRKSENGLIAGVDEVGRGCLAGPVVACAVILTENLAIPG--DSKVLSRAVRLSWYEEIIS 60 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC--QAFA 135 ++ +I +S + I+ NI ATL A+ A+E L V+P + LIDGR I + + + Sbjct: 61 NSYNAIGMSSVKEIETMNILNATLLAMERALERLPVVPTTVLIDGRDIINNAAKYKEVKS 120 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V+ GD I I AASI+AKVTRDRLM YP Y + + GY T +H + + + G + Sbjct: 121 VVSGDKIYGEIKAASIVAKVTRDRLMEGLDLTYPYYRWKFNKGYGTKEHLEALAKYGVTD 180 Query: 196 IHRLTFRPLRNLSV 209 HR F P++ + + Sbjct: 181 HHRRKFAPVKRMLL 194 >gi|281491813|ref|YP_003353793.1| ribonuclease HII [Lactococcus lactis subsp. lactis KF147] gi|281375527|gb|ADA65037.1| Ribonuclease HII [Lactococcus lactis subsp. lactis KF147] Length = 258 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 83/197 (42%), Positives = 118/197 (59%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E E + + + +AGIDEVGRG LAGPVV AA+IL N G+NDSKK+ K + Sbjct: 59 LEFEKELYGQGIQLIAGIDEVGRGPLAGPVVTAAVILPNNCKIRGLNDSKKVPKSKHHAI 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +I A+ I I + ID+ NI++AT A+ AV L V P LID + DLP Sbjct: 119 LSEIQEKALAIGIGIVDAEKIDEVNIYEATKIAMIQAVSKLSVKPEHLLIDAMVL--DLP 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD+ S SIAAASI+AKVTRD +M+ ++P+Y F+ + GY TAKH + + + Sbjct: 177 IAQTKIIHGDARSASIAAASIVAKVTRDEMMKEFALEFPEYDFEHNAGYGTAKHLEALTK 236 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR ++ P++ + Sbjct: 237 YGITRIHRKSYEPIKTM 253 >gi|166712746|ref|ZP_02243953.1| ribonuclease HII [Xanthomonas oryzae pv. oryzicola BLS256] Length = 251 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 83/183 (45%), Positives = 118/183 (64%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DE GRG LAGPV VAA++ DPN G++DSK+++ ++RE LY +I A+ S Sbjct: 41 LVAGVDEAGRGPLAGPVAVAAVVFDPNKPRINGLDDSKQLTAERREHLYARIVDRALAWS 100 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD++ Sbjct: 101 VVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDAL 160 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I AASI+AKVTRDRLM H ++P+Y FD H GY T H ++ GP HR +F Sbjct: 161 DRTIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYSTPMHLAALQTHGPCPQHRRSFA 220 Query: 203 PLR 205 P+R Sbjct: 221 PVR 223 >gi|84623510|ref|YP_450882.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|97189477|sp|Q2P4B9|RNH2_XANOM RecName: Full=Ribonuclease HII; Short=RNase HII gi|84367450|dbj|BAE68608.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 246 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 83/183 (45%), Positives = 119/183 (65%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DE GRG LAGPV VAA++ DPN G++DSK+++ ++RE+LY +I A+ S Sbjct: 36 LVAGVDEAGRGPLAGPVAVAAVVFDPNKPRINGLDDSKQLTAERREQLYARIVDRALAWS 95 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD++ Sbjct: 96 VVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDAL 155 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I AASI+AKVTRDRLM H ++P+Y FD H GY T H ++ GP HR +F Sbjct: 156 DRAIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYSTPMHLAALQTHGPCPQHRRSFA 215 Query: 203 PLR 205 P+R Sbjct: 216 PVR 218 >gi|239617249|ref|YP_002940571.1| Ribonuclease H [Kosmotoga olearia TBF 19.5.1] gi|239506080|gb|ACR79567.1| Ribonuclease H [Kosmotoga olearia TBF 19.5.1] Length = 227 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 89/207 (42%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 M C + E F+ M EK +AG+DE GRG LAGPVV AA+IL G+ DS Sbjct: 1 MRCENTEELLDFD--RMYIEK-FGVIAGLDEAGRGPLAGPVVAAAVIL--GEKIEGLFDS 55 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K ++ K REEL++KI A + I +S ID NI +AT A+ A++ L + P +I Sbjct: 56 KALTEKVREELFDKIIKKAKVGIGLSSPDEIDTFNIFEATKLAMNRAIKKLPIQPDYVII 115 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG+ + L + ++ GD S SIAAASI+AKV RDRLM+ YP+Y +D + GY Sbjct: 116 DGKHLK--LNNRGECIVSGDQKSASIAAASIVAKVFRDRLMKALAVLYPEYSWDKNKGYG 173 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNL 207 TA+H + +K GP+ HRLTF P++ L Sbjct: 174 TAEHLKALKIYGPTLWHRLTFSPVKAL 200 >gi|167753859|ref|ZP_02425986.1| hypothetical protein ALIPUT_02144 [Alistipes putredinis DSM 17216] gi|167658484|gb|EDS02614.1| hypothetical protein ALIPUT_02144 [Alistipes putredinis DSM 17216] Length = 198 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 65/176 (36%), Positives = 98/176 (55%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA++L P+ +NDSK+++ ++R+ L + A+ + + Sbjct: 13 AGCDEAGRGCLAGPVFAAAVMLPPDFSHPLLNDSKQMTARQRDLLRAIVEREALAWVVKA 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI A+ + + AV L + P IDG L ++KGD Sbjct: 73 VSAERIDQINILNASFEGMSLAVAELPIRPGFLAIDGNRFRTTLDIPYRCIVKGDGKYAD 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAAS++AK RD M +P+YG++ + GYPT +H+ I+ G + HRLTF Sbjct: 133 IAAASVLAKTHRDEYMERLAGDFPEYGWERNKGYPTREHRLAIRRYGLTPHHRLTF 188 >gi|297564923|ref|YP_003683895.1| Ribonuclease H [Meiothermus silvanus DSM 9946] gi|296849372|gb|ADH62387.1| Ribonuclease H [Meiothermus silvanus DSM 9946] Length = 216 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 81/198 (40%), Positives = 111/198 (56%), Gaps = 7/198 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 LE E + VAG+DE GRGA AGPVVVAA+IL PF DSK +S ++RE L Sbjct: 10 LERDWWEAGLR-VAGVDEAGRGAWAGPVVVAAVILPRGEHPF--RDSKTLSARQREALEA 66 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 ++ + A+ + A+ I++ I KAT A A+E L V+P + + D + + Sbjct: 67 RVKAVALGWGVGLAAVDEIERLGILKATHRAAQRALECLAVLPDALITDYLRLEREWRGP 126 Query: 133 A---FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A K D S ++AAASI+AKV RDR M +YP YGF +H GY T H++ + Sbjct: 127 ASLLRCPPKADRDSPTVAAASILAKVARDRHMLELEAQYPGYGFATHKGYGTTLHRENLI 186 Query: 190 EKGPSCIHRLTFRPLRNL 207 GPS +HR TF P+R L Sbjct: 187 RLGPSPVHRKTFAPVRCL 204 >gi|304316917|ref|YP_003852062.1| ribonuclease H [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778419|gb|ADL68978.1| Ribonuclease H [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 245 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 82/190 (43%), Positives = 111/190 (58%), Gaps = 2/190 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + + N + G+DEVGRG LAGPVV ++L + +NDSKK+ +KRE L Sbjct: 47 QYERELYKLNYKAIGGVDEVGRGPLAGPVVAGCVVLPKDVFIPDVNDSKKLGEEKRELLS 106 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I +AI I ++YID NI +T +A+ A+ + V LID IP ++ Sbjct: 107 EVIKKNAIAYGIGIIDNEYIDSVNILNSTYEAMRIAISKIDVEIDCLLIDAVKIP-NIDI 165 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD S+SIAAASIIAKV RD LM+ + YP YGF + GY T +H + IK+ Sbjct: 166 MQKPIIKGDMKSISIAAASIIAKVERDNLMKKYDELYPQYGFKKNKGYGTKEHIEAIKKY 225 Query: 192 GPSCIHRLTF 201 GP IHR TF Sbjct: 226 GPCPIHRKTF 235 >gi|159896757|ref|YP_001543004.1| ribonuclease H [Herpetosiphon aurantiacus ATCC 23779] gi|238687141|sp|A9B6H3|RNH2_HERA2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|159889796|gb|ABX02876.1| Ribonuclease H [Herpetosiphon aurantiacus ATCC 23779] Length = 207 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 83/196 (42%), Positives = 116/196 (59%), Gaps = 7/196 (3%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-----FGINDSKKISHKKRE 69 E + VAG+DEVGRG AGPVV AA+ + + GINDSK +S + R+ Sbjct: 8 EQQLWRNGARIVAGVDEVGRGCWAGPVVAAAVSFPTHLLNDPVALAGINDSKTLSAEARQ 67 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + ++I A I + S ID I +AT A+ HAV +L +P +ID +PE Sbjct: 68 AMAQQIRHLASGIGLGVVSAHLIDLFGIAEATKWAMMHAVLSLPSLPDGLVIDWVKLPE- 126 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LP ++ KGD+IS+S+AAASIIAKV RD LM ++ P YG+ +H GY TA+HQ+ + Sbjct: 127 LPLLQRSLPKGDAISISVAAASIIAKVYRDNLMHEYDQRDPRYGWAAHKGYGTAQHQRAL 186 Query: 189 KEKGPSCIHRLTFRPL 204 GPS +HR +F+PL Sbjct: 187 AAHGPSGLHRRSFKPL 202 >gi|325929586|ref|ZP_08190700.1| RNase HII [Xanthomonas perforans 91-118] gi|325540096|gb|EGD11724.1| RNase HII [Xanthomonas perforans 91-118] Length = 245 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 83/200 (41%), Positives = 125/200 (62%), Gaps = 2/200 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHK 66 + P F+ + ++ +AG+DE GRG LAGPV VAA++ DP G++DSK+++ + Sbjct: 19 QSPLFDQSQIPNVESRRLIAGVDEAGRGPLAGPVAVAAVVFDPGKPRINGLDDSKQLTAE 78 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +RE+LY +I A+ S+ + ID+ NI++AT+ + AVE + + A IDG + Sbjct: 79 RREQLYARIVDRALAWSVVLIHSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRV 138 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P+ LPC A A+I GD++ +I AASI+AKVTRDRLM H ++P+Y FD H GY T H Sbjct: 139 PKGLPCPAEALIGGDALDRAIMAASIVAKVTRDRLMYELHTRHPEYRFDQHKGYSTPVHL 198 Query: 186 QVIKEKGPSCIHRLTFRPLR 205 ++ GP HR +F P+R Sbjct: 199 AALQTHGPCPQHRRSFAPVR 218 >gi|282899032|ref|ZP_06307014.1| Ribonuclease HII/HIII [Cylindrospermopsis raciborskii CS-505] gi|281196172|gb|EFA71087.1| Ribonuclease HII/HIII [Cylindrospermopsis raciborskii CS-505] Length = 213 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 78/192 (40%), Positives = 111/192 (57%), Gaps = 6/192 (3%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK 74 + W +AG+DEVGRGAL GPVV AA+IL + + I DSK++S +R L ++ Sbjct: 12 WNQEGW-IAGVDEVGRGALFGPVVAAAVILPNSALSILVESKIKDSKQLSVSRRHYLAQQ 70 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 + A+ I A+ ID+ NI +ATL A+ AV L+ P L+DG DL + Sbjct: 71 VAQLAVEWKIGYATTAEIDRLNILQATLLAMKRAVLKLKSQPSLCLVDGNQFIRDLLIEQ 130 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +I+GD SL+IAAASI+AKV RD L+ KKY Y + GY + KH +++ GP Sbjct: 131 QTIIQGDRRSLNIAAASIMAKVWRDDLVVRLGKKYDMYDLHRNKGYGSRKHLLALQKYGP 190 Query: 194 SCIHRLTFRPLR 205 S +HR +F P + Sbjct: 191 SPLHRRSFSPCQ 202 >gi|313159708|gb|EFR59065.1| ribonuclease HII [Alistipes sp. HGB5] Length = 203 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 67/176 (38%), Positives = 98/176 (55%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA++L P+ +NDSK+++ + RE+L I A+ ++ + Sbjct: 17 AGCDEAGRGCLAGPVFAAAVMLPPDFHDPLLNDSKQMTERNREKLRTIIEHEAVAWAVEA 76 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI A+ + + A L P IDG L ++KGD Sbjct: 77 VSAERIDEINILNASFEGMSLAAARLDPAPGFLAIDGNRFRTRLELPYRCIVKGDGKYAD 136 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAAS++AK RD M +++P YG+ + GYPT +H+ I+E G + HRLTF Sbjct: 137 IAAASVLAKTHRDEYMLRLAEEFPQYGWRKNKGYPTREHRLAIREYGLTPHHRLTF 192 >gi|297569140|ref|YP_003690484.1| ribonuclease H [Desulfurivibrio alkaliphilus AHT2] gi|296925055|gb|ADH85865.1| Ribonuclease H [Desulfurivibrio alkaliphilus AHT2] Length = 218 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 77/196 (39%), Positives = 108/196 (55%), Gaps = 3/196 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 E + + VAGIDE GRG LAGPVV A ++L DSK++ + R Sbjct: 15 SLAFERSLESQGYRLVAGIDEAGRGPLAGPVVAACVVLPAGCEASRFRDSKQLKPELRCR 74 Query: 71 LYEKITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L +I + + + ID+ NI +A+L A+ AV L P L+DG+ Sbjct: 75 LAAEIEALPGVYWGVGVVAPAEIDRLNILQASLLAMQKAVAALAAEPDFLLVDGKH-QLP 133 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LP A+++GDS S SIAAASIIAKV RD +M H++YP Y F H GY TA+H ++ Sbjct: 134 LPLPQQALVRGDSRSASIAAASIIAKVRRDEIMADYHRRYPQYNFHRHKGYGTAEHLHLL 193 Query: 189 KEKGPSCIHRLTFRPL 204 ++ GP IHR +F+P+ Sbjct: 194 RQHGPCPIHRRSFKPV 209 >gi|89900787|ref|YP_523258.1| ribonuclease HII [Rhodoferax ferrireducens T118] gi|122479254|sp|Q21WX6|RNH2_RHOFD RecName: Full=Ribonuclease HII; Short=RNase HII gi|89345524|gb|ABD69727.1| Ribonuclease H [Rhodoferax ferrireducens T118] Length = 207 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 81/182 (44%), Positives = 116/182 (63%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS- 82 VAG+DE GRG LAGPVV AA+ILD G+ DSK +S ++RE+L+++I + A+ Sbjct: 18 GLVAGVDEAGRGPLAGPVVAAAVILDDLQPIKGLADSKILSARRREQLFDEIRAKALCCC 77 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ AS + I++ NI +ATL A+ AVE L++ P L+DG +P L +A A++KGD++ Sbjct: 78 IAQASVEEIERLNILQATLLAMRRAVEGLRLKPALVLVDGNRLPV-LTMRAEAIVKGDAL 136 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKV RDR +YP YGF H GY T +H + + G HR TF Sbjct: 137 VAAISAASILAKVHRDRWCAEVDVQYPQYGFARHKGYGTVQHLAALTKHGACPQHRKTFG 196 Query: 203 PL 204 P+ Sbjct: 197 PV 198 >gi|91205326|ref|YP_537681.1| ribonuclease HII [Rickettsia bellii RML369-C] gi|157826929|ref|YP_001495993.1| ribonuclease HII [Rickettsia bellii OSU 85-389] gi|122425777|sp|Q1RJ72|RNH2_RICBR RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226647|sp|A8GVS9|RNH2_RICB8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|91068870|gb|ABE04592.1| Ribonuclease HII [Rickettsia bellii RML369-C] gi|157802233|gb|ABV78956.1| ribonuclease HII [Rickettsia bellii OSU 85-389] Length = 196 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 95/178 (53%), Positives = 117/178 (65%), Gaps = 2/178 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + +AGIDE GRG LAGPVV AA+I+D NNI GI DSKK+S KKRE LYE+IT++ I + Sbjct: 15 FILAGIDEAGRGPLAGPVVAAAVIVDQNNIIAGIKDSKKLSKKKRELLYEQITANYIWAT 74 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 SH IDK NI +AT A A ENL P L+DG D + ++I GD++S Sbjct: 75 GIISHTEIDKINILEATKKACILAAENLSTKPEIVLVDGNMQFSD--KRFISIINGDNLS 132 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 LSIAAASIIAKVTRDRLM ++P Y + + GY T +H Q IKE G S HRL+F Sbjct: 133 LSIAAASIIAKVTRDRLMLELSNEFPQYLWHKNSGYGTKEHAQAIKEYGLSPYHRLSF 190 >gi|92118687|ref|YP_578416.1| ribonuclease HII [Nitrobacter hamburgensis X14] gi|122417043|sp|Q1QIJ1|RNH2_NITHX RecName: Full=Ribonuclease HII; Short=RNase HII gi|91801581|gb|ABE63956.1| RNase HII [Nitrobacter hamburgensis X14] Length = 267 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 96/195 (49%), Positives = 129/195 (66%), Gaps = 1/195 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F+ E + ++ +WPVAG DEVGRG LAGPVV AA++LDP IP GI+DSK+++ +RE Sbjct: 43 PSFQHERALLKRGVWPVAGCDEVGRGPLAGPVVAAAVVLDPKRIPKGIDDSKRLTAARRE 102 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 EL+E+IT++A +++ AS ID+ NI +A+L A+ AV L +PR +DGR E + Sbjct: 103 ELFEEITATASFAVAFASTARIDRDNILRASLWALARAVHALPDMPRHVFVDGRDRIE-I 161 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C VI GD I LSIAAASI+AKVTRDRLM + P YGF++H GY H + + Sbjct: 162 ACACEPVIGGDGIVLSIAAASIVAKVTRDRLMCKLAQDCPGYGFETHKGYGVPAHLEALG 221 Query: 190 EKGPSCIHRLTFRPL 204 GPS HR F P+ Sbjct: 222 RLGPSPHHRSFFAPV 236 >gi|291514820|emb|CBK64030.1| RNase HII [Alistipes shahii WAL 8301] Length = 199 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 68/176 (38%), Positives = 98/176 (55%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA++L P+ +NDSK+++ + RE+L I A+ ++ + Sbjct: 13 AGCDEAGRGCLAGPVFAAAVMLPPDFHDPLLNDSKQMTERNREKLRAVIEREAVAWAVEA 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S ID+ NI A+ + + AV L P IDG L ++KGD Sbjct: 73 VSAARIDEINILNASFEGMSLAVARLDPAPAFLAIDGNRFRTRLEIPWRCIVKGDGKYAD 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAAS++AK RD M +++P YG+ + GYPT +H+ I+E G + HRLTF Sbjct: 133 IAAASVLAKTHRDEYMLCIAEEFPQYGWAKNKGYPTREHRLAIREHGLTPHHRLTF 188 >gi|46579247|ref|YP_010055.1| ribonuclease HII [Desulfovibrio vulgaris str. Hildenborough] gi|81404983|sp|Q72DU5|RNH2_DESVH RecName: Full=Ribonuclease HII; Short=RNase HII gi|46448661|gb|AAS95314.1| ribonuclease HII [Desulfovibrio vulgaris str. Hildenborough] gi|311233076|gb|ADP85930.1| Ribonuclease H [Desulfovibrio vulgaris RCH1] Length = 220 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 85/190 (44%), Positives = 108/190 (56%), Gaps = 11/190 (5%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AGIDE GRG LAGPVV AA+IL G+ DSKK++ +RE L E I S A+ I Sbjct: 19 AGIDEAGRGCLAGPVVAAAVILPQEYALPGLTDSKKLTAARRESLAEGIRSCAVTWGIGV 78 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPE----DLPC-----QAFA 135 + ID+ NI +AT A+ AV L+ P + LIDG +++P L C A Sbjct: 79 VWPRDIDRINILQATFRAMARAVRVLRQPPPAILIDGDKTLPPHVLTSLSCDGHLPTQRA 138 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 +I GD +I+AASI+AK RDRLM ++Y YGF H GY TA+H I GP Sbjct: 139 IIGGDGCIPAISAASILAKTFRDRLMDTLDRRYHGYGFAKHKGYGTAEHLAAIAAHGPCA 198 Query: 196 IHRLTFRPLR 205 HRLTFR +R Sbjct: 199 QHRLTFRGVR 208 >gi|240142860|ref|YP_002967373.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Methylobacterium extorquens AM1] gi|240012807|gb|ACS44032.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Methylobacterium extorquens AM1] Length = 222 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 83/200 (41%), Positives = 116/200 (58%), Gaps = 6/200 (3%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHK 66 RP +E E + VAG+DE GRG LAG V AA+++ + DSK ++ Sbjct: 4 RPTYERERAAGK----VVAGVDECGRGCLAGEVWAAAVVIPDWAAAGVSAVADSKILAAA 59 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 KRE+L E + +S +I +AS + I++ NI +AT+ A+ AV L V P L+DG +P Sbjct: 60 KREQLCEMLRTSCHAAIGTASLEEIERLNILQATMLAMSRAVAALPVRPDHVLVDGNRVP 119 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + LPC A AV+ GD+ +IAAASI+AKV RD M H +P YG+D + GY T +H Sbjct: 120 KGLPCAATAVVGGDATVRAIAAASIVAKVGRDAAMASLHLAHPAYGWDRNAGYGTPEHLA 179 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I+ GPS HR TF +R Sbjct: 180 AIRTHGPSPHHRRTFAGVRE 199 >gi|255530318|ref|YP_003090690.1| ribonuclease HII [Pedobacter heparinus DSM 2366] gi|255343302|gb|ACU02628.1| Ribonuclease H [Pedobacter heparinus DSM 2366] Length = 203 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 72/176 (40%), Positives = 100/176 (56%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL P+ I +NDSK+++H++R+ L I AI +++ Sbjct: 13 AGCDEAGRGCLAGPVFAAAVILPPDFIAGELNDSKQLNHQQRKRLRIIIEKEAIAWAVAE 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + ID+ NI A+ A++ A+E L V P+ IDG + ++KGD L+ Sbjct: 73 VDNIEIDQINILNASFLAMHRAIEKLLVKPQYLSIDGNRFKKYPDIPHACIVKGDGKYLN 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M +YP Y + + GYPT H+ E G S HR TF Sbjct: 133 IAAASILAKTHRDEFMERISDEYPHYQWHQNKGYPTVVHRSAALEHGLSPYHRKTF 188 >gi|302878990|ref|YP_003847554.1| Ribonuclease H [Gallionella capsiferriformans ES-2] gi|302581779|gb|ADL55790.1| Ribonuclease H [Gallionella capsiferriformans ES-2] Length = 204 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 89/194 (45%), Positives = 125/194 (64%), Gaps = 2/194 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + ++ + G+DE GRG LAGPV AA+ILDPNN G+NDSKK+S K+RE+L Sbjct: 8 EMALNDEKFTLICGVDEAGRGPLAGPVSAAAVILDPNNPIPGLNDSKKLSEKQREKLASL 67 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A+ +++ A+ + ID+ NI +ATL A+ AV+ LQV P+ L+DG P D + Sbjct: 68 IRECALAWAVAYATVEEIDRLNILQATLLAMRRAVQALQVQPQLVLVDGLYCP-DTGIAS 126 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 A++KGDS +I+AASI+AK RD LM ++YP YGF H GYPTA H ++ G Sbjct: 127 EAIVKGDSKVAAISAASILAKTDRDALMLQLDEQYPHYGFALHKGYPTAAHLAALQAHGV 186 Query: 194 SCIHRLTFRPLRNL 207 S +HR +F+P+R L Sbjct: 187 SVVHRRSFKPVRVL 200 >gi|220931581|ref|YP_002508489.1| Ribonuclease H [Halothermothrix orenii H 168] gi|219992891|gb|ACL69494.1| Ribonuclease H [Halothermothrix orenii H 168] Length = 308 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 81/202 (40%), Positives = 118/202 (58%), Gaps = 15/202 (7%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII-------LDPNNIPFGINDSKKISH 65 L+ + ++ +AG+DE GRG LAGP P G++DSKK++ Sbjct: 62 SLQNNLFKEGFHFIAGVDEAGRGPLAGP-------VVAAAVVFKPETKVLGLDDSKKLTA 114 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 K+RE L+E+I A+ I + ++ IDK NI A+L A+ A+++L LIDG++ Sbjct: 115 KERETLFEEIYDRALSIGVGIVDNKDIDKLNILNASLKAMKKALDSLSCPVDYILIDGKN 174 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +L + AVI GD+ IAAASIIAKVTRDR++ HKKYP+YGF ++ GY T +H Sbjct: 175 KLSELNIKQQAVIDGDNKVNVIAAASIIAKVTRDRILDKLHKKYPEYGFINNKGYGTREH 234 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 + +K GPS IHR +F +R Sbjct: 235 IEALKAYGPSPIHRYSFSLVRE 256 >gi|120603190|ref|YP_967590.1| ribonuclease HII [Desulfovibrio vulgaris DP4] gi|166225183|sp|A1VFE7|RNH2_DESVV RecName: Full=Ribonuclease HII; Short=RNase HII gi|120563419|gb|ABM29163.1| RNase HII [Desulfovibrio vulgaris DP4] Length = 220 Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 84/190 (44%), Positives = 108/190 (56%), Gaps = 11/190 (5%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AGIDE GRG LAGPVV AA+IL G+ DSKK++ +RE L E I S A+ + Sbjct: 19 AGIDEAGRGCLAGPVVAAAVILPQEYTLPGLTDSKKLTAARRESLAEGIRSCAVTWGLGV 78 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPED----LPC-----QAFA 135 + ID+ NI +AT A+ AV L+ P + LIDG +++P L C A Sbjct: 79 VWPRDIDRINILQATFRAMARAVRVLRQPPPALLIDGDKTLPPHVLTTLSCDGHLPTQRA 138 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 +I GD +I+AASI+AK RDRLM ++Y YGF H GY TA+H I GP Sbjct: 139 IIGGDGCIPAISAASILAKTFRDRLMDTLDRRYHGYGFAKHKGYGTAEHLAAIAAHGPCA 198 Query: 196 IHRLTFRPLR 205 HRLTFR +R Sbjct: 199 QHRLTFRGVR 208 >gi|282896399|ref|ZP_06304420.1| Ribonuclease HII/HIII [Raphidiopsis brookii D9] gi|281198687|gb|EFA73567.1| Ribonuclease HII/HIII [Raphidiopsis brookii D9] Length = 210 Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 85/210 (40%), Positives = 116/210 (55%), Gaps = 7/210 (3%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFG 56 M S+ E EL +K VAG+DEVGRGAL GPVV AA+IL + + Sbjct: 1 MHKGSVKESNWQELSDHWHQKG--WVAGVDEVGRGALFGPVVAAAVILPNSALSILVESK 58 Query: 57 INDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP 115 I DSK++S R L ++I A+ I A+ ID+ NI +ATL A+ AV L+ P Sbjct: 59 IKDSKQLSVSHRRYLAQQIAQLAVEWKIGYATTAEIDRLNILQATLLAMKRAVLKLKSQP 118 Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 L+DG DL + A+I+GD SL+IAAASI+AKV RD L+ KKY Y Sbjct: 119 SLCLVDGNQFIRDLLIEQQAIIQGDRRSLNIAAASIMAKVWRDDLVVRLGKKYDMYDLHQ 178 Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 + GY + KH +++ G S +HR +F P + Sbjct: 179 NKGYGSQKHLLALQKHGASPLHRQSFSPCQ 208 >gi|167756891|ref|ZP_02429018.1| hypothetical protein CLORAM_02440 [Clostridium ramosum DSM 1402] gi|167703066|gb|EDS17645.1| hypothetical protein CLORAM_02440 [Clostridium ramosum DSM 1402] Length = 206 Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 74/189 (39%), Positives = 111/189 (58%), Gaps = 4/189 (2%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 + + G+DE GRG +AG +VVA ++ INDSK++S KKRE LY+ I +A Sbjct: 12 QAGYDYIIGLDEAGRGPMAGELVVAGVVFPKGFYDERINDSKQLSAKKREVLYDLIIENA 71 Query: 80 IIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + I S +D+ N+++A+ + +E L+ AL D P D P ++IK Sbjct: 72 LYYDIEIISVADVDRLNVYQASKQGMEKCLELLKKEKMFALTDAM--PIDYP-DHLSIIK 128 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD+ S+SIA ASI+AKVTRDRLM +YP+YGF+ H GY T H++ + + G IHR Sbjct: 129 GDAKSISIAGASILAKVTRDRLMEAYALEYPEYGFEKHKGYVTKAHKEALGKYGVCPIHR 188 Query: 199 LTFRPLRNL 207 +F P++ + Sbjct: 189 KSFGPVQKI 197 >gi|237734601|ref|ZP_04565082.1| ribonuclease HII [Mollicutes bacterium D7] gi|229382421|gb|EEO32512.1| ribonuclease HII [Coprobacillus sp. D7] Length = 206 Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 75/189 (39%), Positives = 112/189 (59%), Gaps = 4/189 (2%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 + + G+DEVGRG +AG +VVA ++ INDSK++S KKRE LY+ I +A Sbjct: 12 QAGYDYIIGLDEVGRGPMAGELVVAGVVFPKGFYDERINDSKQLSAKKREVLYDLIIENA 71 Query: 80 IIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + I S +D+ N+++A+ + +E L+ AL D P D P ++IK Sbjct: 72 LYYDIEIISVADVDRLNVYQASKQGMEKCLELLKKEKMFALTDAM--PIDYP-DHLSIIK 128 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD+ S+SIA ASI+AKVTRDRLM +YP+YGF+ H GY T H++ + + G IHR Sbjct: 129 GDAKSISIAGASILAKVTRDRLMEAYALEYPEYGFEKHKGYVTKAHKEALGKYGVCPIHR 188 Query: 199 LTFRPLRNL 207 +F P++ + Sbjct: 189 KSFGPVQKI 197 >gi|108798940|ref|YP_639137.1| ribonuclease HII [Mycobacterium sp. MCS] gi|119868055|ref|YP_938007.1| ribonuclease HII [Mycobacterium sp. KMS] gi|123070330|sp|Q1BAK3|RNH2_MYCSS RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226628|sp|A1UEF9|RNH2_MYCSK RecName: Full=Ribonuclease HII; Short=RNase HII gi|108769359|gb|ABG08081.1| RNase HII [Mycobacterium sp. MCS] gi|119694144|gb|ABL91217.1| RNase HII [Mycobacterium sp. KMS] Length = 239 Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 80/197 (40%), Positives = 115/197 (58%), Gaps = 4/197 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE+ + + PVAG+DEVGRGA AGP+VVAA +L PN + ++DSKK+ K+RE L Sbjct: 20 LESALYRNGLGPVAGVDEVGRGACAGPLVVAACVLGPNRLESLAALDDSKKLGEKERERL 79 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ + + +D+ +H A ++ + AV L V P L DG +P LP Sbjct: 80 FPVIRRYALAYHVVFIPSEEVDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP-GLP 138 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + V+ GD+ + IAAAS++AKV+RDRLM +++P YGF H GY T H + E Sbjct: 139 MPSLPVVGGDAAAACIAAASVLAKVSRDRLMVAMEREHPGYGFAEHKGYSTPAHTAALAE 198 Query: 191 KGPSCIHRLTFRPLRNL 207 GP HR +F +R L Sbjct: 199 LGPCAQHRYSFINVRRL 215 >gi|21230816|ref|NP_636733.1| ribonuclease HII [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769185|ref|YP_243947.1| ribonuclease HII [Xanthomonas campestris pv. campestris str. 8004] gi|39932426|sp|Q8PAW7|RNH2_XANCP RecName: Full=Ribonuclease HII; Short=RNase HII gi|81304856|sp|Q4USP6|RNH2_XANC8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|21112418|gb|AAM40657.1| ribonuclease HII [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574517|gb|AAY49927.1| ribonuclease HII [Xanthomonas campestris pv. campestris str. 8004] Length = 240 Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 83/185 (44%), Positives = 118/185 (63%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-I 81 +AG+DE GRG LAGPV VAA++ DP G++DSK++S ++RE+LY +I A+ Sbjct: 31 RLIAGVDEAGRGPLAGPVAVAAVVFDPAKPRINGLDDSKQLSAERREQLYARIVDRALAW 90 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S+ + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD+ Sbjct: 91 SVVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDA 150 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + +I AASI+AKVTRDRLMR H ++P Y FD H GY T H ++ GP HR +F Sbjct: 151 LDRAIMAASIVAKVTRDRLMRELHAQHPQYRFDLHKGYSTPAHLAALQTHGPCPQHRRSF 210 Query: 202 RPLRN 206 P+R Sbjct: 211 APVRR 215 >gi|15673275|ref|NP_267449.1| ribonuclease HII [Lactococcus lactis subsp. lactis Il1403] gi|13878721|sp|Q9CG17|RNH2_LACLA RecName: Full=Ribonuclease HII; Short=RNase HII gi|12724270|gb|AAK05391.1|AE006361_7 ribonuclease HII [Lactococcus lactis subsp. lactis Il1403] gi|326406831|gb|ADZ63902.1| ribonuclease HII [Lactococcus lactis subsp. lactis CV56] Length = 258 Score = 228 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 82/197 (41%), Positives = 117/197 (59%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E E + + + +AGIDEVGRG LAGPVV AA+IL N G+NDSKK+ K + Sbjct: 59 LEFEKELYGQEIQLIAGIDEVGRGPLAGPVVTAAVILPKNCKIRGLNDSKKVPKSKHHAI 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +I A+ I I + ID+ NI++AT A+ AV L V P LID + D P Sbjct: 119 LSEIQEKALAIGIGIVDAEKIDEVNIYEATKIAMIQAVSKLSVKPEHLLIDAMVL--DFP 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD+ S SIAAASI+AKVTRD +M+ ++P+Y F+ + GY TAKH + + + Sbjct: 177 IAQTKIIHGDARSASIAAASIVAKVTRDEMMKEFALEFPEYDFEHNAGYGTAKHLEALTK 236 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR ++ P++ + Sbjct: 237 YGITRIHRKSYEPIKTM 253 >gi|229918612|ref|YP_002887258.1| ribonuclease H [Exiguobacterium sp. AT1b] gi|229470041|gb|ACQ71813.1| Ribonuclease H [Exiguobacterium sp. AT1b] Length = 250 Score = 228 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 80/203 (39%), Positives = 116/203 (57%), Gaps = 7/203 (3%) Query: 9 RPHFE----LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 R FE E + K V G+DEVGRG LAGPVV AA++L G+NDSKK++ Sbjct: 51 REDFERRMIYEREWKHKGYTRVVGVDEVGRGPLAGPVVAAAVLLPDGFYLPGLNDSKKMT 110 Query: 65 HKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 R+ Y I A + + ID+ NI++AT A+ A+ + + + LID Sbjct: 111 KSARDAAYAHIIEVAEVGVGIVEPAIIDEINIYEATKLAMTEAIHQVGEV-DALLIDAMK 169 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + D+P Q+ +IKGD++S+SIAAAS++AKV RDR+M YP YGF + GY T H Sbjct: 170 LELDIPQQS--LIKGDTLSVSIAAASVVAKVVRDRMMEEYDLTYPGYGFAKNAGYGTETH 227 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 + ++ G + IHR TF P++ + Sbjct: 228 LEGLRRLGVTPIHRRTFAPIKYM 250 >gi|319952346|ref|YP_004163613.1| ribonuclease h [Cellulophaga algicola DSM 14237] gi|319421006|gb|ADV48115.1| Ribonuclease H [Cellulophaga algicola DSM 14237] Length = 198 Score = 228 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 98/179 (54%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRG LAGPV AA++L N +NDSKK+S KR L I A+ +++ Sbjct: 12 IGTDEAGRGCLAGPVTAAAVVLPENFTNTLLNDSKKLSEIKRFSLKPIIEEFALSFAVTH 71 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ID NI A++ A+ +V L R ++DG +IKGD +S Sbjct: 72 IEPLIIDDINILNASILAMQKSVLKLDTTARHIIVDGNRFKPMKNYSYDCIIKGDGKYMS 131 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD +M + H+++P Y + + GYPT +H+ I++ G + HR +FR L Sbjct: 132 IAAASILAKTYRDEVMNVLHEEFPMYNWKQNKGYPTKEHRAAIRKYGITKYHRKSFRQL 190 >gi|34763383|ref|ZP_00144335.1| Ribonuclease HII [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|294786017|ref|ZP_06751304.1| ribonuclease HII [Fusobacterium sp. 3_1_27] gi|27886956|gb|EAA24076.1| Ribonuclease HII [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|294486354|gb|EFG33717.1| ribonuclease HII [Fusobacterium sp. 3_1_27] Length = 214 Score = 227 bits (580), Expect = 6e-58, Method: Composition-based stats. Identities = 81/191 (42%), Positives = 115/191 (60%), Gaps = 7/191 (3%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKIT 76 + + V G+DE GRG LAGPVV AA+IL + INDSKK++ K RE+LY+ I Sbjct: 11 LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSKKLTEKTREKLYDIIM 70 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPC 131 + +++ ++ + IDK NI A A+ A+++L+ I + L+DG ++ Sbjct: 71 KNFYVAVGVSTVEEIDKLNILNADFLAMRRALKDLENIKKDKKEYTVLVDGNLKIKEYTG 130 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++KGD+ SLSIAAASIIAKVTRDRLM+ YPDY F+ H GY T H + IK+K Sbjct: 131 KQLPIVKGDAKSLSIAAASIIAKVTRDRLMKDLASVYPDYHFEKHKGYGTKAHIEAIKDK 190 Query: 192 GPSC-IHRLTF 201 G +HR F Sbjct: 191 GAIEGVHRKVF 201 >gi|269303000|gb|ACZ33100.1| ribonuclease HII [Chlamydophila pneumoniae LPCoLN] Length = 214 Score = 227 bits (580), Expect = 6e-58, Method: Composition-based stats. Identities = 84/197 (42%), Positives = 120/197 (60%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + VAGIDE GRG LAGPVV +A IL + G+NDSKK+S K+R ++ Sbjct: 16 AFEKELVSEGFSVVAGIDEAGRGPLAGPVVASACILPKGKVFPGVNDSKKLSPKQRAQVR 75 Query: 73 EKITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + + I S + ID+ NI +AT +A+ A+ +L + P L+DG +P D+P Sbjct: 76 DALMQDPEVCFGIGVISVERIDQVNILEATKEAMLQAISSLPISPDILLVDGLYLPHDIP 135 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 C+ +I+GD+ S SIAAASI+AK RD LM H+ YP+YGFD H GY T+ H + I+ Sbjct: 136 CK--KIIQGDAKSASIAAASILAKEHRDDLMLQLHRLYPEYGFDRHKGYGTSLHVEAIRR 193 Query: 191 KGPSCIHRLTFRPLRNL 207 GPS HR +F P++ + Sbjct: 194 YGPSPCHRKSFSPIKQM 210 >gi|326791381|ref|YP_004309202.1| ribonuclease H [Clostridium lentocellum DSM 5427] gi|326542145|gb|ADZ84004.1| Ribonuclease H [Clostridium lentocellum DSM 5427] Length = 254 Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 80/202 (39%), Positives = 120/202 (59%), Gaps = 11/202 (5%) Query: 11 HFELEAMVRE----------KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 +E E + + N + + GIDEVGRG LAGPVV AA+IL + G+ DS Sbjct: 46 TYENELALWQLKCEFDSIFHDNQYILVGIDEVGRGPLAGPVVAAAVILPYDTNLVGLKDS 105 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK++ KRE+LY++I S+A+ I I ID+ NI +AT +A+ HA+ L++ L Sbjct: 106 KKLTEPKREKLYDQIQSNALGIGIGIVDADRIDEINILQATFEAMRHALSELKIDYDRVL 165 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 +DG + + + A+I GD S SIAAAS+IAKVTRDR+M+ Y Y ++++ GY Sbjct: 166 VDGDKVIPKIQIRQEAIIGGDDKSASIAAASVIAKVTRDRMMKAYANTYDKYDWENNKGY 225 Query: 180 PTAKHQQVIKEKGPSCIHRLTF 201 + KH + I+ G + +HR +F Sbjct: 226 GSQKHYEAIRNYGITPLHRKSF 247 >gi|331269647|ref|YP_004396139.1| ribonuclease H [Clostridium botulinum BKT015925] gi|329126197|gb|AEB76142.1| ribonuclease H [Clostridium botulinum BKT015925] Length = 269 Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 79/183 (43%), Positives = 105/183 (57%), Gaps = 7/183 (3%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKKREELYEKITSSA 79 +AG DEVGRG LAGP+V AA+ILD + + INDSKKI + REEL E I A Sbjct: 80 YLAGCDEVGRGPLAGPIVAAAVILDLEFANNDKLILKINDSKKIKPELREELAEIIKEKA 139 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 I ++ + ID I + + +V L+V P L DG I ++ V+K Sbjct: 140 IAYCVAEIDNSEIDNKGIAWCNNEVLQRSVNGLKVKPDLVLSDGYKI-KNCSIDNKFVVK 198 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD+ S SIA ASIIAKV RD+LM+ + Y DY FD ++GY T +H IK+ G + IHR Sbjct: 199 GDAKSASIACASIIAKVYRDKLMQKYSEIYKDYAFDKNMGYGTKEHIDSIKKYGCTPIHR 258 Query: 199 LTF 201 +F Sbjct: 259 KSF 261 >gi|166031980|ref|ZP_02234809.1| hypothetical protein DORFOR_01682 [Dorea formicigenerans ATCC 27755] gi|166028433|gb|EDR47190.1| hypothetical protein DORFOR_01682 [Dorea formicigenerans ATCC 27755] Length = 219 Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 93/192 (48%), Positives = 122/192 (63%), Gaps = 6/192 (3%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 FE E K+ + GIDEVGRG LAGPVV A+IL +++ +NDSKK+S KKRE Sbjct: 28 TFEEE----YKDYPYICGIDEVGRGPLAGPVVAGAVILPKDDMILYLNDSKKLSEKKREM 83 Query: 71 LYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY++I + A+ I AS ID+ NI +AT +A+ A++NL+V P L D +IP+ + Sbjct: 84 LYDEIMNRAVATGIGMASPARIDEINILQATYEAMRMAIDNLKVRPDILLNDAVTIPQ-V 142 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +IKGD+ S+SIAAASIIAKVTRDRLM K P Y F S+ GY T H +K Sbjct: 143 DILQVPIIKGDAKSISIAAASIIAKVTRDRLMVEYDKVLPGYDFASNKGYGTKAHIAGLK 202 Query: 190 EKGPSCIHRLTF 201 E GP+ IHR +F Sbjct: 203 ELGPTPIHRRSF 214 >gi|255534413|ref|YP_003094784.1| Ribonuclease HII [Flavobacteriaceae bacterium 3519-10] gi|255340609|gb|ACU06722.1| Ribonuclease HII [Flavobacteriaceae bacterium 3519-10] Length = 218 Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 71/177 (40%), Positives = 106/177 (59%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DEVGRG L GPVV AA+ILD + ++DSKK++ K R L I + +++ Sbjct: 26 AGCDEVGRGCLCGPVVAAAVILDEKFVQNLVDDSKKLNFKTRIYLDAYIKDNVKEYAVAE 85 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 +ID+HNI A++ A++ A++ LQ P L+DG +IKGD+ LS Sbjct: 86 LPPSHIDEHNILNASIHAMHRALDQLQTRPELILVDGNRFHPYNFIPHQCIIKGDASILS 145 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IA ASI+AK RD+LM H ++P YG+ +++GY T +H++ + GP+ HR +FR Sbjct: 146 IACASILAKNYRDQLMIKLHDEFPHYGWKTNMGYATKEHREALNRYGPTEHHRRSFR 202 >gi|237756157|ref|ZP_04584727.1| ribonuclease HII [Sulfurihydrogenibium yellowstonense SS-5] gi|237691683|gb|EEP60721.1| ribonuclease HII [Sulfurihydrogenibium yellowstonense SS-5] Length = 197 Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 79/188 (42%), Positives = 113/188 (60%), Gaps = 3/188 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + + + GIDE GRG LAGP+V+A++I + PF +DSK +S K+RE L+EK Sbjct: 5 EKELFSQGYEKIVGIDEAGRGPLAGPLVIASVIFPKHQKPFIHSDSKGLSEKEREYLFEK 64 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A I+I+ + IDK I A + + +++L+ AL+D + E + Sbjct: 65 IHDYAEEINITIIENTEIDKLGISNAAKIYMENNLKSLKSKWDIALVDFVKLDESI--NH 122 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGD IS +IAAASIIAKV RDR+M +KYP++ FD H GY T +H Q IK+ G Sbjct: 123 LPLIKGDEISHTIAAASIIAKVVRDRIMIEYKEKYPNFSFDKHKGYATKQHYQEIKKFGI 182 Query: 194 SCIHRLTF 201 + IHR +F Sbjct: 183 TPIHRRSF 190 >gi|284008506|emb|CBA75018.1| ribonuclease HII [Arsenophonus nasoniae] Length = 174 Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 74/168 (44%), Positives = 100/168 (59%), Gaps = 2/168 (1%) Query: 41 VVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKA 99 +V AA+ILDP G+ DSKK++ K+R L +I A+ SI A + IDK NI +A Sbjct: 1 MVTAAVILDPKQPIIGLADSKKLTEKRRNALCIEILDKALCWSIGRAEPEEIDKINILQA 60 Query: 100 TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR 159 T A+ AV L P L+DG P P + A+IKGDS+ I+AASI+AKVTRDR Sbjct: 61 TFLAMRRAVAGLTTRPDIVLVDGNKSP-GFPVPSQAIIKGDSLVQEISAASILAKVTRDR 119 Query: 160 LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 MR +P+YGF H GYPTA H + + + G + HR +F P+R + Sbjct: 120 EMRELDILFPEYGFAQHKGYPTAFHLEKLAQHGATQFHRKSFAPVRRV 167 >gi|242277680|ref|YP_002989809.1| ribonuclease H [Desulfovibrio salexigens DSM 2638] gi|242120574|gb|ACS78270.1| Ribonuclease H [Desulfovibrio salexigens DSM 2638] Length = 218 Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 73/185 (39%), Positives = 105/185 (56%), Gaps = 7/185 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AGIDE GRG LAGPVV A+IL G+ DSKK+ R+ L +I A+ ++ Sbjct: 17 AGIDEAGRGCLAGPVVAGAVILPEEYDLPGLTDSKKLDEAARDRLAVEIKKQAVCWALGV 76 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED------LPCQAFAVIKG 139 + Q +D+ NI +AT A+ +V +L+V P+ ++DG + AV+KG Sbjct: 77 SRAQVVDQINILQATFRAMGRSVLHLKVKPQMLMVDGNKTIPAPHLNGVAGFRQEAVVKG 136 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D +I+AASI+AK RD+LM K+Y YGF+ H GY T H +KE GP +HR+ Sbjct: 137 DLKIPAISAASILAKTFRDKLMVQLAKRYAAYGFEIHKGYGTKVHLDALKEHGPCAVHRM 196 Query: 200 TFRPL 204 TF+ + Sbjct: 197 TFKGV 201 >gi|188996137|ref|YP_001930388.1| Ribonuclease H [Sulfurihydrogenibium sp. YO3AOP1] gi|229564299|sp|B2V752|RNH2_SULSY RecName: Full=Ribonuclease HII; Short=RNase HII gi|188931204|gb|ACD65834.1| Ribonuclease H [Sulfurihydrogenibium sp. YO3AOP1] Length = 197 Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 79/188 (42%), Positives = 112/188 (59%), Gaps = 3/188 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + + + GIDE GRG LAGP+V+A++I + PF DSK +S K+RE L+EK Sbjct: 5 EKELFSQGYEKIVGIDEAGRGPLAGPLVIASVIFPKHQKPFIHTDSKGLSEKEREYLFEK 64 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A I+I+ + IDK I A + + +++L+ AL+D + E + Sbjct: 65 IHDYAEEINITIVENTEIDKFGISNAAKIYMENNLKSLKSKWDIALVDFVKLDESI--NH 122 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGD IS +IAAASIIAKV RDR+M +KYP++ FD H GY T +H Q IK+ G Sbjct: 123 LPLIKGDEISHTIAAASIIAKVVRDRIMIEYKEKYPNFSFDKHKGYATKQHYQEIKKFGI 182 Query: 194 SCIHRLTF 201 + IHR +F Sbjct: 183 TPIHRRSF 190 >gi|110639206|ref|YP_679415.1| RNase HII [Cytophaga hutchinsonii ATCC 33406] gi|123163320|sp|Q11R91|RNH2_CYTH3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|110281887|gb|ABG60073.1| RNase HII [Cytophaga hutchinsonii ATCC 33406] Length = 202 Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 77/187 (41%), Positives = 115/187 (61%), Gaps = 5/187 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG +AGPVV AA+IL PN +NDSKK++ K+RE L + I A+ ++ Sbjct: 16 AGLDEAGRGCMAGPVVAAAVILPPNYKHSLLNDSKKLTIKQRELLRQDIIRDALDYHVAE 75 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQ-VIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SH ID+ NI AT+ A++ AV+ L+ P LIDG + + +++GD + L Sbjct: 76 VSHTVIDQINILNATMKAMHKAVKGLKKQQPNLLLIDGNRFKQYTGIEHVCIVQGDGLYL 135 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT--FR 202 SIAAAS++AK RD LM K++P+YG+D + GY T KH+ ++ G + HR + F+ Sbjct: 136 SIAAASVLAKTHRDSLMERLAKEHPEYGWDVNAGYATEKHRLAMETHGLTPYHRTSFHFK 195 Query: 203 PLRNLSV 209 P + L + Sbjct: 196 P-KQLDL 201 >gi|289662893|ref|ZP_06484474.1| ribonuclease HII [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 242 Score = 227 bits (579), Expect = 8e-58, Method: Composition-based stats. Identities = 82/184 (44%), Positives = 118/184 (64%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-I 81 VAG+DE GRG LAGPV VAA++ DP+ G++DSK+++ ++RE+LY +I A+ Sbjct: 31 RLVAGVDEAGRGPLAGPVAVAAVVFDPSKPRINGLDDSKQLTAERREQLYARIVDRALAW 90 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S+ + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD+ Sbjct: 91 SVVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDA 150 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + +I AASI+AKVTRDRLM H ++P Y FD H GY T H ++ GP HR +F Sbjct: 151 LDRAIMAASIVAKVTRDRLMHALHAQHPQYRFDQHKGYSTPVHLAALQTHGPCPQHRRSF 210 Query: 202 RPLR 205 P+R Sbjct: 211 APVR 214 >gi|303327966|ref|ZP_07358405.1| ribonuclease HII [Desulfovibrio sp. 3_1_syn3] gi|302861792|gb|EFL84727.1| ribonuclease HII [Desulfovibrio sp. 3_1_syn3] Length = 230 Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 108/207 (52%), Gaps = 14/207 (6%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + + PVAGIDE GRG LAGPVV AA+IL G+ DSK +S K R+ L Sbjct: 11 FGPEDIPFGRRSGPVAGIDEAGRGCLAGPVVAAAVILPAVYELPGLTDSKALSAKARDIL 70 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL- 129 +I A+ + + I++ NI +AT +A+ AV L++ P LIDG + D Sbjct: 71 APRIRECALAWGLGVVWPRRIERINILQATFEAMSRAVGVLRLTPGRLLIDGNKVLPDAV 130 Query: 130 ------------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 P AV+ GD I+AASI+AK RDRLM +++P YG + H Sbjct: 131 LTLFWRTGHTAPPPLQQAVVGGDKSEDVISAASILAKTFRDRLMLHLGRRWPGYGLEEHK 190 Query: 178 GYPTAKHQQVIKEKGPSCIHRLTFRPL 204 GY T H ++ GP HRLTFR + Sbjct: 191 GYGTKAHYAALRRLGPCPQHRLTFRGV 217 >gi|329942999|ref|ZP_08291773.1| ribonuclease HII family protein [Chlamydophila psittaci Cal10] gi|332287581|ref|YP_004422482.1| ribonuclease HII [Chlamydophila psittaci 6BC] gi|313848155|emb|CBY17156.1| ribonuclease HII [Chlamydophila psittaci RD1] gi|325506940|gb|ADZ18578.1| ribonuclease HII [Chlamydophila psittaci 6BC] gi|328814546|gb|EGF84536.1| ribonuclease HII family protein [Chlamydophila psittaci Cal10] gi|328914832|gb|AEB55665.1| ribonuclease HII [Chlamydophila psittaci 6BC] Length = 212 Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats. Identities = 88/196 (44%), Positives = 120/196 (61%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E V + +AGIDEVGRG LAGPVV AA IL + G+NDSKK++ K+R ++ + Sbjct: 18 FEEEVFREGFSLIAGIDEVGRGPLAGPVVAAACILPRGKVFAGVNDSKKLTPKERGKIRD 77 Query: 74 KITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + + S + ID+ NI +AT +A+ A+ NL + P L+DG +P +PC Sbjct: 78 ILVNDPEVYYGLGVVSVERIDEINILEATKEAMAVAIANLPIHPDFLLVDGLHLPHKIPC 137 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +I+GDS S SIAAASIIAK RD LMR H+ YP+YGFD H GY TA H +K Sbjct: 138 K--KIIQGDSKSASIAAASIIAKEYRDDLMRELHQLYPNYGFDKHKGYGTAAHLAALKAF 195 Query: 192 GPSCIHRLTFRPLRNL 207 GP HR +F P+R + Sbjct: 196 GPCDCHRKSFAPVRQV 211 >gi|320449238|ref|YP_004201334.1| ribonuclease HII [Thermus scotoductus SA-01] gi|320149407|gb|ADW20785.1| ribonuclease HII [Thermus scotoductus SA-01] Length = 205 Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats. Identities = 81/192 (42%), Positives = 108/192 (56%), Gaps = 6/192 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 LEA + VAG+DE GRGA AGP+VV A+IL P PF DSK + K+RE L E Sbjct: 8 LEASFWSLGLR-VAGVDEAGRGAWAGPIVVGAVILPPGRYPF--RDSKLLRPKERERLAE 64 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 ++ A+ ++ A +D+ + KATL A A++ L P + + D + LP Sbjct: 65 EVRRVALAYALGVAEVGEVDRLGVLKATLLAAQRALDLLDPPPEALVTDYLQVATSLPL- 123 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A K D S S+AAASI+AKV RDRLM + YP YGF H GY T +HQ+ + G Sbjct: 124 -LAPPKADQNSPSVAAASILAKVHRDRLMVELDRLYPGYGFARHKGYGTPEHQEALLVLG 182 Query: 193 PSCIHRLTFRPL 204 PS +HR F P+ Sbjct: 183 PSPVHRRCFAPV 194 >gi|187778966|ref|ZP_02995439.1| hypothetical protein CLOSPO_02561 [Clostridium sporogenes ATCC 15579] gi|187772591|gb|EDU36393.1| hypothetical protein CLOSPO_02561 [Clostridium sporogenes ATCC 15579] Length = 269 Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats. Identities = 85/188 (45%), Positives = 118/188 (62%), Gaps = 6/188 (3%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEK 74 R N + +AG+DEVGRG LAGP+V AA++LD N + I DSKK+S KKREEL Sbjct: 78 RYGNSYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMHRILNIKDSKKLSEKKREELDII 137 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI +I+ ++ ID+ I + + + AVE L V P L DG ++ ++L + Sbjct: 138 IREKAISYNIALVDNRTIDERGIAWSNNEVLKRAVEGLNVKPDLVLSDGYAV-KNLNIRN 196 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGDS S+SIA+ASIIAKV RD +M+ K+ YGF+ + GY T +H Q IK+ G Sbjct: 197 EFIIKGDSKSVSIASASIIAKVYRDNMMKEYSKELSMYGFNHNAGYGTEEHIQAIKKYGT 256 Query: 194 SCIHRLTF 201 S IHR++F Sbjct: 257 SKIHRMSF 264 >gi|167768005|ref|ZP_02440058.1| hypothetical protein CLOSS21_02548 [Clostridium sp. SS2/1] gi|167710334|gb|EDS20913.1| hypothetical protein CLOSS21_02548 [Clostridium sp. SS2/1] gi|291561007|emb|CBL39807.1| Ribonuclease HII [butyrate-producing bacterium SSC/2] Length = 218 Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats. Identities = 88/191 (46%), Positives = 115/191 (60%), Gaps = 4/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E N + GIDEVGRG AGPVV AA+IL + +NDSKK+S KKRE L Sbjct: 26 FSFEREY--GNHQAICGIDEVGRGPFAGPVVAAAVILPKDCDILYLNDSKKLSEKKRELL 83 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y++I A+ I I +S + ID+ NI +AT A+ A+ L + P L D +IP D+ Sbjct: 84 YDEIYEKAVAIGIGMSSEEVIDEINILQATYKAMQQAISKLSIKPDLLLNDAVTIP-DVE 142 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +IKGD+ S SIAAASI+AKVTRDR+M+ YP Y F + GY T H + IK+ Sbjct: 143 IEQIPIIKGDAKSASIAAASIVAKVTRDRMMKEYDIIYPGYDFAKNKGYGTKAHIEGIKK 202 Query: 191 KGPSCIHRLTF 201 +G IHR TF Sbjct: 203 QGICDIHRRTF 213 >gi|237738859|ref|ZP_04569340.1| ribonuclease HII [Fusobacterium sp. 2_1_31] gi|229423962|gb|EEO39009.1| ribonuclease HII [Fusobacterium sp. 2_1_31] Length = 217 Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats. Identities = 84/191 (43%), Positives = 116/191 (60%), Gaps = 7/191 (3%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKIT 76 + + V G+DE GRG LAGPVV AA+IL + INDSKK++ KKRE+LY+ I Sbjct: 7 LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKQYSEELDEINDSKKLTEKKREKLYDIIL 66 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR-----SALIDGRSIPEDLPC 131 ++ +++ AS + IDK NI A A+ A+++L+ L+DG ++ Sbjct: 67 NNFNVAVGIASVEEIDKLNILNADFLAMRRALKDLEKFHEVDKDYIVLVDGNLKIKEYEG 126 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + V+KGD+ SLSIAAASIIAKVTRDR+M+ KYPDY F+ + GY T KH + IK K Sbjct: 127 KQLPVVKGDAKSLSIAAASIIAKVTRDRIMKDLGLKYPDYDFEKNKGYGTKKHVEAIKTK 186 Query: 192 GPSC-IHRLTF 201 G +HR F Sbjct: 187 GVLKNVHRKVF 197 >gi|296136565|ref|YP_003643807.1| Ribonuclease H [Thiomonas intermedia K12] gi|295796687|gb|ADG31477.1| Ribonuclease H [Thiomonas intermedia K12] Length = 214 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 82/184 (44%), Positives = 115/184 (62%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG DEVGRG AGPVV AA++LDP + G+ DSK +S ++REEL +I + ++ SI Sbjct: 17 LIAGCDEVGRGPWAGPVVAAAVVLDPAHPIAGLADSKLLSARRREELDAQIRAHSLGWSI 76 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + +S + ID+ NI +ATL A+ AV L L+DG P+ + A++ GD+ Sbjct: 77 AESSVEEIDQRNILQATLLAMQRAVAALPCKIDLLLVDGNQTPQ-VAMPCRAIVGGDAAE 135 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASIIAKV RDRLM ++YP YGF+ H GY TA H+ + GP HR +F P Sbjct: 136 PAISAASIIAKVYRDRLMAELAQRYPGYGFERHSGYGTAAHRAALLTLGPCAEHRRSFAP 195 Query: 204 LRNL 207 +R L Sbjct: 196 IRRL 199 >gi|291294813|ref|YP_003506211.1| ribonuclease H [Meiothermus ruber DSM 1279] gi|290469772|gb|ADD27191.1| Ribonuclease H [Meiothermus ruber DSM 1279] Length = 215 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 80/208 (38%), Positives = 109/208 (52%), Gaps = 17/208 (8%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREE 70 LE+ + + VAG+DE GRGALAGPVV AA+IL P P DSK ++ + RE Sbjct: 3 ALESDWWKLGLR-VAGVDEAGRGALAGPVVAAAVILPPPKEPALYPFRDSKTLTPRAREH 61 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L E++ + A+ + A ID+ I +AT A A+E L+V P + L D + ++ Sbjct: 62 LAEQVRAVALAWGVGWAEVAEIDRLGILRATHLAAARALEQLKVSPEALLTDYLRLEQEW 121 Query: 130 -------------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 P A K D S ++AAASI+AKV RDR M ++YP YGF H Sbjct: 122 QQYLRNNPSRPDAPHLLRAPPKADRHSPTVAAASILAKVARDRYMEALEQRYPGYGFAQH 181 Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 GY T H + +K GP HR TF P+ Sbjct: 182 KGYGTTLHLRALKALGPCGAHRRTFAPV 209 >gi|218283550|ref|ZP_03489540.1| hypothetical protein EUBIFOR_02130 [Eubacterium biforme DSM 3989] gi|218215818|gb|EEC89356.1| hypothetical protein EUBIFOR_02130 [Eubacterium biforme DSM 3989] Length = 202 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 77/196 (39%), Positives = 110/196 (56%), Gaps = 5/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 LE ++N V G+DE GRG +AGP++VA +I I+DSKK+S KKRE L++ Sbjct: 6 LEHDYWDQN-QSVLGMDEAGRGPIAGPLMVAGVIFPKGYHNELIDDSKKLSEKKREALFK 64 Query: 74 KITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I A+ I + IDK NI++AT +A+ + L D +P D+ Sbjct: 65 TIIQDALYYQILVVDEKTIDKKNIYRATQEAMMEIAN--KAQCDFVLSDAMPLP-DIDKP 121 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A++KGD SLSIAAASI+AKVTRDR M+ + YP YG H GYPT H + + + G Sbjct: 122 FQAIVKGDQKSLSIAAASILAKVTRDRWMKKLDEMYPQYGLAKHKGYPTKAHIEALNQYG 181 Query: 193 PSCIHRLTFRPLRNLS 208 +R ++ P++ L Sbjct: 182 LQDFYRRSYGPVKKLE 197 >gi|15643677|ref|NP_228723.1| ribonuclease HII [Thermotoga maritima MSB8] gi|7227928|sp|Q9X017|RNH2_THEMA RecName: Full=Ribonuclease HII; Short=RNase HII gi|4981451|gb|AAD35996.1|AE001755_19 ribonuclease HII [Thermotoga maritima MSB8] Length = 238 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 82/198 (41%), Positives = 108/198 (54%), Gaps = 18/198 (9%) Query: 17 MVREKNMWPVAGIDEVGRGALAGP-------VVVAAIILDPNNIPFGINDSKKISHKKRE 69 + +K VAG+DE GRG LAGP + GINDSK++S KRE Sbjct: 5 ELYKKEFGIVAGVDEAGRGCLAGPVVAAAVVL---------EKEIEGINDSKQLSPAKRE 55 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L ++I A + I AS + ID +NI AT A+ A+ENL V P L+DG+ I +L Sbjct: 56 RLLDEIMEKAAVGIGIASPEEIDLYNIFNATKLAMNRALENLSVKPSFVLVDGKGI--EL 113 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++KGD S I AASI+AKV RDRLM H+ YP + F H GY T +H I+ Sbjct: 114 SVPGTCLVKGDQKSKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKHKGYATKEHLNEIR 173 Query: 190 EKGPSCIHRLTFRPLRNL 207 + G IHRL+F P+ L Sbjct: 174 KNGVLPIHRLSFEPVLEL 191 >gi|148269157|ref|YP_001243617.1| ribonuclease HII [Thermotoga petrophila RKU-1] gi|170287819|ref|YP_001738057.1| ribonuclease H [Thermotoga sp. RQ2] gi|281411455|ref|YP_003345534.1| Ribonuclease H [Thermotoga naphthophila RKU-10] gi|166226666|sp|A5IIL8|RNH2_THEP1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|238688861|sp|B1LC19|RNH2_THESQ RecName: Full=Ribonuclease HII; Short=RNase HII gi|147734701|gb|ABQ46041.1| RNase HII [Thermotoga petrophila RKU-1] gi|170175322|gb|ACB08374.1| Ribonuclease H [Thermotoga sp. RQ2] gi|281372558|gb|ADA66120.1| Ribonuclease H [Thermotoga naphthophila RKU-10] Length = 238 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 83/198 (41%), Positives = 109/198 (55%), Gaps = 18/198 (9%) Query: 17 MVREKNMWPVAGIDEVGRGALAGP-------VVVAAIILDPNNIPFGINDSKKISHKKRE 69 + +K VAG+DE GRG LAGP + GINDSK++S KRE Sbjct: 5 ELYKKEFGIVAGVDEAGRGCLAGPVVAAAVVL---------EKEIEGINDSKQLSPAKRE 55 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+++I A + I AS + ID HNI AT A+ A+ENL V P L+DG+ I +L Sbjct: 56 RLFDEIMGKAAVGIGIASPEEIDLHNIFNATKLAMNRALENLSVGPSFVLVDGKGI--EL 113 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++KGD S I AASI+AKV RDRLM HK YP + F H GY T +H I+ Sbjct: 114 RVPGTCLVKGDQKSKLIGAASIVAKVFRDRLMSEFHKMYPQFSFHKHKGYATKEHLNEIR 173 Query: 190 EKGPSCIHRLTFRPLRNL 207 + G IHR++F P+ L Sbjct: 174 KNGVLPIHRMSFEPVLEL 191 >gi|255319657|ref|ZP_05360866.1| ribonuclease HII [Acinetobacter radioresistens SK82] gi|262378546|ref|ZP_06071703.1| ribonuclease HII [Acinetobacter radioresistens SH164] gi|255303274|gb|EET82482.1| ribonuclease HII [Acinetobacter radioresistens SK82] gi|262299831|gb|EEY87743.1| ribonuclease HII [Acinetobacter radioresistens SH164] Length = 191 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 77/192 (40%), Positives = 107/192 (55%), Gaps = 19/192 (9%) Query: 26 VAGIDEVGRGALAGPVVVAAI---------ILDPNNIPFGINDSKKISHKKREELYEKIT 76 +AG+DE GRG L ILDP G+NDSKK++ KKRE+L+ +I Sbjct: 3 IAGVDEAGRGPL---------VGAVVAAAVILDPARPIEGLNDSKKLTEKKREKLFVEIQ 53 Query: 77 SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 A+ I+ AS ID+ NI +A+L A+ AVE L + P L+DG P L A Sbjct: 54 EKALAWYIAEASATEIDEINILQASLLAMRRAVEGLSIQPDKVLVDGNKEPAGLQMSCEA 113 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V+ GD++ I+AASI+AKV RDR M + ++YP YGF H GYPT H + I G Sbjct: 114 VVGGDALYQEISAASILAKVARDRQMVLLDQRYPHYGFAKHKGYPTKAHFEAIGIHGVID 173 Query: 196 IHRLTFRPLRNL 207 HR ++ P++ + Sbjct: 174 EHRRSYAPVKKV 185 >gi|262067279|ref|ZP_06026891.1| ribonuclease HII [Fusobacterium periodonticum ATCC 33693] gi|291379005|gb|EFE86523.1| ribonuclease HII [Fusobacterium periodonticum ATCC 33693] Length = 217 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 84/191 (43%), Positives = 117/191 (61%), Gaps = 7/191 (3%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKIT 76 + + V G+DE GRG LAGPVV AA+IL + INDSKK++ KKRE+LY+ I Sbjct: 7 LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKQYSEELDEINDSKKLTEKKREKLYDIIL 66 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPC 131 ++ +++ AS + IDK NI A A+ A+++L+ + L+DG ++ Sbjct: 67 NNFNVAVGIASVEEIDKLNILNADFLAMRRALKDLEKFHEANKDYIVLVDGNLKIKEYEG 126 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + V+KGD+ SLSIAAASIIAKVTRDR+M+ KYPDY F+ + GY T KH + IK K Sbjct: 127 KQLPVVKGDAKSLSIAAASIIAKVTRDRIMKGLGLKYPDYDFEKNKGYGTKKHVEAIKTK 186 Query: 192 GPSC-IHRLTF 201 G +HR F Sbjct: 187 GVLKNVHRKVF 197 >gi|111023503|ref|YP_706475.1| ribonuclease HII [Rhodococcus jostii RHA1] gi|122955111|sp|Q0S2B9|RNH2_RHOSR RecName: Full=Ribonuclease HII; Short=RNase HII gi|110823033|gb|ABG98317.1| ribonuclease H [Rhodococcus jostii RHA1] Length = 226 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 77/197 (39%), Positives = 115/197 (58%), Gaps = 4/197 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREEL 71 +E+ + + PVAG+DE GRGA AGP+VVAA +L P P ++DSKK++ + REEL Sbjct: 19 MESALVRSGLGPVAGVDEAGRGACAGPLVVAACVLAPKPYPALARLDDSKKLTERTREEL 78 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + IT A+ S+ S + +D+ +H A ++ + AV L P L DG +P LP Sbjct: 79 FPAITRLAVAWSVVSFPAEEVDRMGVHVANIEGMRRAVAGLSTTPGYVLTDGFRVP-GLP 137 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+ + IAAAS++AKV+RDR+M + +P YGF H GY T H +++ Sbjct: 138 APSLPVIGGDAAAACIAAASVLAKVSRDRVMVAMDETHPGYGFAIHKGYNTPAHLTALEK 197 Query: 191 KGPSCIHRLTFRPLRNL 207 GP HR ++ + L Sbjct: 198 LGPCPEHRRSWSNVAAL 214 >gi|296284404|ref|ZP_06862402.1| ribonuclease HII [Citromicrobium bathyomarinum JL354] Length = 212 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 73/188 (38%), Positives = 107/188 (56%), Gaps = 9/188 (4%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 V G+DE GRG LAGPVV +A+ L P G++DSKK+ KR L E++ ++ Sbjct: 19 LVVGVDEAGRGPLAGPVVASAVALCKPR-PAGLDDSKKLGALKRSALDEQVRRRCAWGVA 77 Query: 85 SASHQYIDKHNIHKATLDAIYHAV----ENLQVIPRSALIDGRSIP----EDLPCQAFAV 136 + ID+ NI AT+ A+ AV + + P L+DG P E A A+ Sbjct: 78 VVEPEEIDRLNIFGATMLAMTLAVTRVAQAMGRAPDMVLVDGNLTPSGRCEGWCWPARAI 137 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 + GD+ +I+AASI+AK RDRLM A ++YP YG++ + GY TA+H ++E GP + Sbjct: 138 VGGDAKEPAISAASIVAKEWRDRLMIAAAREYPHYGWERNKGYGTAEHLSALREHGPCAL 197 Query: 197 HRLTFRPL 204 HR +F P+ Sbjct: 198 HRRSFAPV 205 >gi|296394368|ref|YP_003659252.1| ribonuclease H [Segniliparus rotundus DSM 44985] gi|296181515|gb|ADG98421.1| Ribonuclease H [Segniliparus rotundus DSM 44985] Length = 221 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 72/195 (36%), Positives = 107/195 (54%), Gaps = 4/195 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREE 70 EA +R VAG+DE GRGA AGP+VVA+ +L P G++DSK+++ +KRE Sbjct: 23 AFEAALRRAGYTSVAGVDEAGRGACAGPLVVASCVLKPRSARALPGLDDSKRLTAQKREW 82 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L +I ++ + +D +H+A L+ + AV L P L+DG +P + Sbjct: 83 LEPRIREQSLGWHVVVMPPAEVDAMGVHQANLEGMRRAVAGLAQPPDYVLMDGFDVP-GM 141 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P A V+ GD + IAAAS++AKV RDR+M + YGF +H GY TA H + Sbjct: 142 PSPAQRVVGGDRLVACIAAASVLAKVARDRIMVALDQSRSGYGFAAHKGYCTAAHMSALA 201 Query: 190 EKGPSCIHRLTFRPL 204 + GP HR ++ P+ Sbjct: 202 QFGPCEHHRYSYAPV 216 >gi|296536589|ref|ZP_06898669.1| ribonuclease H [Roseomonas cervicalis ATCC 49957] gi|296263085|gb|EFH09630.1| ribonuclease H [Roseomonas cervicalis ATCC 49957] Length = 205 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 87/209 (41%), Positives = 125/209 (59%), Gaps = 13/209 (6%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISH 65 P + LE + VAG+DE GRG LAGPV+ AA++ P+ + ++DSKK+S Sbjct: 1 MPDYTLELAAGGR----VAGVDEAGRGPLAGPVMAAAVMFHGAPPDTLAMLLDDSKKLSA 56 Query: 66 KKREELYEKITSSAIISI-----SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 +KRE + + ++A + ++AS I + NI +AT A++ AV L +P L+ Sbjct: 57 EKREAAFAVLRAAARAGVLDYAIAAASAAEIGRLNILRATHLAMWRAVSRLPALPDLVLV 116 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG + P LPC V+KGDS+SLSIAAASI+AKVTRDR M ++P YGF H GYP Sbjct: 117 DGNAAPR-LPCATRCVVKGDSLSLSIAAASILAKVTRDRAMIRLDGRWPGYGFARHAGYP 175 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209 TA H+ +++ GP HR F P+ L++ Sbjct: 176 TAAHRAALEKLGPCPHHRRGFAPVDQLAL 204 >gi|188577177|ref|YP_001914106.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521629|gb|ACD59574.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae PXO99A] Length = 211 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 83/182 (45%), Positives = 119/182 (65%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DE GRG LAGPV VAA++ DPN G++DSK+++ ++RE+LY +I A+ S+ Sbjct: 2 VAGVDEAGRGPLAGPVAVAAVVFDPNKPRINGLDDSKQLTAERREQLYARIVDRALSWSV 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD++ Sbjct: 62 VLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALD 121 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I AASI+AKVTRDRLM H ++P+Y FD H GY T H ++ GP HR +F P Sbjct: 122 RAIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYSTPMHLAALQTHGPCPQHRRSFAP 181 Query: 204 LR 205 +R Sbjct: 182 VR 183 >gi|125624006|ref|YP_001032489.1| ribonuclease HII [Lactococcus lactis subsp. cremoris MG1363] gi|146345506|sp|O30415|RNH2_LACLM RecName: Full=Ribonuclease HII; Short=RNase HII gi|124492814|emb|CAL97769.1| RnhB protein [Lactococcus lactis subsp. cremoris MG1363] gi|300070776|gb|ADJ60176.1| ribonuclease HII [Lactococcus lactis subsp. cremoris NZ9000] Length = 257 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 81/197 (41%), Positives = 118/197 (59%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E E + + + +AGIDEVGRG LAGPVV AA+IL N G+NDSKK+ K + Sbjct: 59 LEFEKELYSQEIELIAGIDEVGRGPLAGPVVTAAVILPKNCKIRGLNDSKKVPKSKHHAI 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +I A+ I + + ID+ NI++AT A+ AV L + P LID + DLP Sbjct: 119 LSEIQEKALAIGVGIVDAEKIDEVNIYEATKIAMIQAVSKLSLKPEHLLIDAMVL--DLP 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD+ S SIAAASI+AKVTRD +M+ ++P+Y F+ + GY TAKH + + Sbjct: 177 IAQTKIIHGDARSASIAAASIVAKVTRDEMMKDFALEFPEYDFEHNAGYGTAKHLAALTK 236 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR ++ P++++ Sbjct: 237 YGITRIHRKSYEPIKSM 253 >gi|126434540|ref|YP_001070231.1| ribonuclease HII [Mycobacterium sp. JLS] gi|166226627|sp|A3PXW3|RNH2_MYCSJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|126234340|gb|ABN97740.1| RNase HII [Mycobacterium sp. JLS] Length = 239 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 80/197 (40%), Positives = 114/197 (57%), Gaps = 4/197 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE+ + + PVAG+DEVGRGA AGP+VVAA +L PN + ++DSKK+ K+RE L Sbjct: 20 LESALYRNGLGPVAGVDEVGRGACAGPLVVAACVLGPNRLESLAALDDSKKLGEKERERL 79 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ + +D+ +H A ++ + AV L V P L DG +P LP Sbjct: 80 FPVIRRYALAYHVVFIPSGEVDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP-GLP 138 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + V+ GD+ + IAAAS++AKV+RDRLM +++P YGF H GY T H + E Sbjct: 139 MPSLPVVGGDAAAACIAAASVLAKVSRDRLMVAMEREHPGYGFAEHKGYSTPAHTAALAE 198 Query: 191 KGPSCIHRLTFRPLRNL 207 GP HR +F +R L Sbjct: 199 LGPCAQHRYSFINVRRL 215 >gi|169338113|ref|ZP_02622674.2| ribonuclease HII [Clostridium botulinum C str. Eklund] gi|169294134|gb|EDS76267.1| ribonuclease HII [Clostridium botulinum C str. Eklund] Length = 272 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 82/199 (41%), Positives = 114/199 (57%), Gaps = 8/199 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKI 63 R +E + +AG DEVGRG LAGP+V A+++LD +N+ INDSKKI Sbjct: 68 RNMYEFDKKYINGG-TYLAGADEVGRGPLAGPIVAASVVLDLDTINDDNLILRINDSKKI 126 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S + REEL + I A+ SI S++ IDK I + + +V L++ P L DG Sbjct: 127 SFEVREELSKIIRKRAVSYSIQEISNEEIDKKGIAWCNNEVLKRSVCELKISPDLVLSDG 186 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 I ++ V+KGD+ S SIA ASIIAKV RD LM K YP+Y F+ ++GY T Sbjct: 187 YKI-KNCTISNEFVVKGDAKSASIACASIIAKVYRDNLMIEYSKIYPEYMFNKNMGYGTK 245 Query: 183 KHQQVIKEKGPSCIHRLTF 201 +H + IK+ G + IHR +F Sbjct: 246 EHIEAIKKFGCTPIHRKSF 264 >gi|317498401|ref|ZP_07956696.1| ribonuclease HII [Lachnospiraceae bacterium 5_1_63FAA] gi|316894295|gb|EFV16482.1| ribonuclease HII [Lachnospiraceae bacterium 5_1_63FAA] Length = 218 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 87/191 (45%), Positives = 115/191 (60%), Gaps = 4/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + + GIDEVGRG AGPVV AA+IL + +NDSKK+S KKRE L Sbjct: 26 FSFEREYGDH--QAICGIDEVGRGPFAGPVVAAAVILPKDCDILYLNDSKKLSEKKRELL 83 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y++I A+ I I +S + ID+ NI +AT A+ A+ L + P L D +IP D+ Sbjct: 84 YDEIYEKAVAIGIGMSSEEVIDEINILQATYKAMQQAISKLSIKPDLLLNDAVTIP-DVE 142 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +IKGD+ S SIAAASI+AKVTRDR+M+ YP Y F + GY T H + IK+ Sbjct: 143 IEQVPIIKGDAKSASIAAASIVAKVTRDRMMKEYDTIYPGYDFAKNKGYGTKAHIEGIKK 202 Query: 191 KGPSCIHRLTF 201 +G IHR TF Sbjct: 203 QGICDIHRRTF 213 >gi|254304340|ref|ZP_04971698.1| ribonuclease H [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324532|gb|EDK89782.1| ribonuclease H [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 217 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 83/190 (43%), Positives = 114/190 (60%), Gaps = 6/190 (3%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKIT 76 + + V G+DE GRG LAGPVV AA+IL INDSKK++ KKRE+LY+ I Sbjct: 11 LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKEYTEELNEINDSKKLTEKKREKLYDIIM 70 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS----ALIDGRSIPEDLPCQ 132 + +++ ++ + IDK NI A A+ A+ +L+ I L+DG ++ + Sbjct: 71 KNFDVAVGISTVEEIDKLNILNADFLAMRRALNDLKNIKNEKEYTVLVDGNLKIKEYVGK 130 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 F ++KGD+ SLSIAAASIIAKVTRDR M+ YPDY F+ H GY T H +VIK+KG Sbjct: 131 QFPIVKGDAKSLSIAAASIIAKVTRDRFMKDLASIYPDYCFEKHKGYGTKAHIEVIKDKG 190 Query: 193 PSC-IHRLTF 201 +HR F Sbjct: 191 AIEGVHRKVF 200 >gi|300870469|ref|YP_003785340.1| ribonuclease HII [Brachyspira pilosicoli 95/1000] gi|300688168|gb|ADK30839.1| ribonuclease HII (RNase HII) [Brachyspira pilosicoli 95/1000] Length = 221 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 83/201 (41%), Positives = 116/201 (57%), Gaps = 7/201 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD-PNNIPFGINDSKKISHKKREE 70 E + + GIDEVGRG+L G V A+I+ ++I NDSKK++ KKREE Sbjct: 15 LHYEKYYLDLGYKYICGIDEVGRGSLFGEVTACAVIMPLDDDIIKEANDSKKLTAKKREE 74 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY+ I A+ S+ S + IDK NI+ AT A+ AVE L + P LID I D Sbjct: 75 LYKIIIQKALSYSVYSVAANTIDKINIYNATKLAMLKAVEGLSIKPDILLIDAMKI--DT 132 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH---KKYPDYGFDSHVGYPTAKHQQ 186 + ++IKGD S SIA ASI+AKV+RD+ M I K+Y Y + GY T +H + Sbjct: 133 EIKQESIIKGDLKSYSIACASIVAKVSRDKAMNILSEKNKEYDKYKISKNKGYGTKEHIE 192 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 IK+ G S +HRL+F P++++ Sbjct: 193 AIKKYGASDLHRLSFEPIKSI 213 >gi|94266071|ref|ZP_01289789.1| Ribonuclease H [delta proteobacterium MLMS-1] gi|93453354|gb|EAT03785.1| Ribonuclease H [delta proteobacterium MLMS-1] Length = 236 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 84/200 (42%), Positives = 118/200 (59%), Gaps = 6/200 (3%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 E + + VAG DE GRG LAGPVV A ++L + DSK++S +R E Sbjct: 18 TLAFERSLWAQGYRLVAGTDEAGRGPLAGPVVAACVVLPVDCRSP-FQDSKQLSASRRRE 76 Query: 71 LYEKITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPE 127 L ++ + A + + AS ID NI +A+L A+ AV LQ P L+DG+ ++P Sbjct: 77 LEAELNALPGAAVGVGIASVAEIDGLNILQASLLAMRKAVTALQPPPDFLLVDGKFTVPL 136 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +LP A+IKGDS S SIAAASI+AK RD+LM H++YP Y F H GY TA+H+++ Sbjct: 137 ELP--QQALIKGDSRSASIAAASIVAKERRDQLMADLHRQYPQYNFIQHKGYATAEHRRL 194 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 + GP HR +F+P+R L Sbjct: 195 LHRFGPCPEHRRSFKPVREL 214 >gi|68536259|ref|YP_250964.1| ribonuclease HII [Corynebacterium jeikeium K411] gi|260578959|ref|ZP_05846862.1| ribonuclease HII [Corynebacterium jeikeium ATCC 43734] gi|97182389|sp|Q4JV11|RNH2_CORJK RecName: Full=Ribonuclease HII; Short=RNase HII gi|68263858|emb|CAI37346.1| rnhB [Corynebacterium jeikeium K411] gi|258602933|gb|EEW16207.1| ribonuclease HII [Corynebacterium jeikeium ATCC 43734] Length = 208 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 73/195 (37%), Positives = 109/195 (55%), Gaps = 5/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN---DSKKISHKKREE 70 +E + + PVAG+DE GRGA GP+ +AA IL + G++ DSKK++ K RE Sbjct: 1 MERELESAGLGPVAGVDEAGRGACCGPISIAACILPSDLDGVGLDRLTDSKKLTEKTRER 60 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY+ I A+ SI S + ID+ I A + + AV L V P L D +P L Sbjct: 61 LYDVIRDVAVSYSIIHISAEDIDRFGIQHANVSGMRRAVAALDVQPGYVLTDAVKVP-GL 119 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P V+KGD ++ I+AAS++AKV+RDR++R +++P YG SH GY T H + Sbjct: 120 PMPHLPVVKGDQMAKCISAASVLAKVSRDRVLRTLDEEFPGYGLASHKGYGTKAHMTAVS 179 Query: 190 EKGPSCIHRLTFRPL 204 G + HR +++ + Sbjct: 180 LHGGTPYHRYSYKNV 194 >gi|121533787|ref|ZP_01665614.1| Ribonuclease H [Thermosinus carboxydivorans Nor1] gi|121307778|gb|EAX48693.1| Ribonuclease H [Thermosinus carboxydivorans Nor1] Length = 265 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 84/196 (42%), Positives = 118/196 (60%), Gaps = 2/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E++ E+ + +AG+DE GRG LAGPVVVAA+IL +NDSKK+S +R L Sbjct: 66 YLYESVFYEQGLDLIAGVDEAGRGPLAGPVVVAAVILPKRQHLPMLNDSKKLSPHQRSLL 125 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YEKI +A+ ++ ID NI++ATL +Y +ENL P+ ALID + + Sbjct: 126 YEKIIGTAVAVNHVVIPVCQIDSMNIYQATLQGMYRVLENLSPKPQVALIDAMPL-RKIV 184 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++I GD++S SIAAASI+AKV RDR M YP YGF H GY T +H ++ Sbjct: 185 LPHMSIINGDALSASIAAASIVAKVVRDRYMDEMDVLYPGYGFAKHKGYATPEHLAALRR 244 Query: 191 KGPSCIHRLTFRPLRN 206 GP IHR +F P+++ Sbjct: 245 LGPCPIHRRSFEPIKS 260 >gi|254785187|ref|YP_003072615.1| ribonuclease HII [Teredinibacter turnerae T7901] gi|237686020|gb|ACR13284.1| ribonuclease HII [Teredinibacter turnerae T7901] Length = 191 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 85/185 (45%), Positives = 115/185 (62%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG LAG VV AA++L N+ G+ DSKK+S KKRE L+ +I A Sbjct: 1 MIIAGVDEVGRGPLAGDVVAAAVVLGENHGIVGLADSKKLSEKKREALFVQIQQQAECFC 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ AS ID+ NI +A+L A+ AVE L++ P L+DG +P A A++KGDS Sbjct: 61 IARASVAEIDEINILQASLLAMKRAVEGLKIEPEHVLVDGNRLPR-WRYSAEAIVKGDSK 119 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKVTRDR M +YP YGF H GYPT H + G + IHR ++ Sbjct: 120 VEAISAASILAKVTRDREMVAFEAQYPGYGFAGHKGYPTKLHMDALARLGVTPIHRTSYA 179 Query: 203 PLRNL 207 P++ L Sbjct: 180 PVKAL 184 >gi|172040491|ref|YP_001800205.1| hypothetical protein cur_0811 [Corynebacterium urealyticum DSM 7109] gi|171851795|emb|CAQ04771.1| unnamed protein product [Corynebacterium urealyticum DSM 7109] Length = 241 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 78/190 (41%), Positives = 110/190 (57%), Gaps = 4/190 (2%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREELYEKI 75 +R VAG+DE GRGA GP+ +A+ IL + +P G+NDSKK++ K+RE L+ I Sbjct: 33 LRFHGFSHVAGVDEAGRGACCGPITIASCILPDHGVPELAGLNDSKKLTPKRRERLFGAI 92 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 T A+ I ID+ I A ++ +Y V L V P L D +PE L C+ Sbjct: 93 TEHAVAYEIVHIPAAEIDQRGIQYANINGMYRVVAGLGVEPDVVLTDAVHLPE-LACEHA 151 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 ++KGD++S +I+AASI+AKV+RDRLM +KYP YG H GY TAKH ++ G Sbjct: 152 PLVKGDALSPAISAASILAKVSRDRLMVEMAEKYPGYGLAGHKGYGTAKHMAAVRLHGAC 211 Query: 195 CIHRLTFRPL 204 HR T+ + Sbjct: 212 PEHRYTYSNV 221 >gi|240170577|ref|ZP_04749236.1| ribonuclease HII [Mycobacterium kansasii ATCC 12478] Length = 239 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 80/198 (40%), Positives = 114/198 (57%), Gaps = 4/198 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE+ + + PVAG+DEVGRGA AGP+VVAA +L PN + ++DSKK++ K RE+L Sbjct: 20 LESALHRSGLGPVAGVDEVGRGACAGPLVVAACVLGPNRLESLAALDDSKKLTEKAREKL 79 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ + +D+ +H A ++ + AV L V P L DG +P LP Sbjct: 80 FPLICRYALAYHVVFIPSVEVDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVP-GLP 138 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+ + IAAAS++AKV+RDRLM +YP YGF H GY T H + Sbjct: 139 MPSLPVIGGDAAAACIAAASVLAKVSRDRLMVAMDAQYPGYGFAEHKGYSTPAHTLALAR 198 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP HR +F +R ++ Sbjct: 199 LGPCPEHRYSFINVRRVA 216 >gi|189219283|ref|YP_001939924.1| Ribonuclease HII [Methylacidiphilum infernorum V4] gi|189186141|gb|ACD83326.1| Ribonuclease HII [Methylacidiphilum infernorum V4] Length = 226 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 73/202 (36%), Positives = 113/202 (55%), Gaps = 4/202 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKRE 69 E + K +AGIDEVGRGA+AGPVV AA+IL + + DSK + KKR+ Sbjct: 5 DLSYEKRLLTKGYRVIAGIDEVGRGAIAGPVVAAAVILPQDLPFHKYLKDSKAVEEKKRK 64 Query: 70 ELYEKITSSAIIS--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 ++ + + IS + + + I++ NIH + L A+ A+ L+ P L+DG P Sbjct: 65 QVVQWLLKEGRISFGLGFSFVEEIERINIHGSCLLAMRRAISCLEERPDILLVDGIFSPP 124 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L + ++ GD+ SIAAAS++AKV+RD M YP+YG++ + GY TA H + Sbjct: 125 HLSIPSLTIVGGDAKVASIAAASLVAKVSRDGWMVKLSSLYPEYGWEKNKGYGTANHFES 184 Query: 188 IKEKGPSCIHRLTFRPLRNLSV 209 ++ KG S HR +F ++ L + Sbjct: 185 LRTKGLSPYHRKSF-LVKRLHL 205 >gi|295110185|emb|CBL24138.1| Ribonuclease HII [Ruminococcus obeum A2-162] Length = 251 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 88/205 (42%), Positives = 126/205 (61%), Gaps = 8/205 (3%) Query: 8 ERPHFELEAMV----REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 E +E M+ + +++ + GIDEVGRG LAGPVV A+IL ++ +NDSKK+ Sbjct: 49 EAEKLRMEQMMQYEHKYEHLGYLCGIDEVGRGPLAGPVVACAVILPADHQILYLNDSKKL 108 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 + KREELY+ I A+ + I ID+ NI +AT +A+ A+ L+V P+ L D Sbjct: 109 TAHKREELYDVILREAVAVGIGMVGPAKIDEINILQATYEAMRQAISKLKVTPQLLLNDA 168 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 +IP + +IKGD+ S SIAAASI+AKVTRDRLM K P YGF S+ GY + Sbjct: 169 VTIP-GVEVPQVPIIKGDAKSASIAAASIVAKVTRDRLMVEYDKTLPGYGFASNKGYGST 227 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 +H + +K+ GP+ IHR+TF ++N Sbjct: 228 EHIEALKKFGPTPIHRVTF--IKNF 250 >gi|296327674|ref|ZP_06870216.1| ribonuclease H [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155205|gb|EFG95980.1| ribonuclease H [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 213 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 81/186 (43%), Positives = 112/186 (60%), Gaps = 6/186 (3%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI 80 V G+DE GRG LAGPVV AA+IL INDSKK++ KKRE+LY+ I + Sbjct: 15 EYKNVIGVDEAGRGPLAGPVVAAAVILKEYTEELDEINDSKKLTEKKREKLYDIIMKNFD 74 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS----ALIDGRSIPEDLPCQAFAV 136 +++ ++ + IDK NI A A+ A+++L+ + L+DG ++ + + Sbjct: 75 VAVGISTVEEIDKLNILNADFLAMRRALKDLKSLKNEKEYTVLVDGNLKIKEYIGKQLPI 134 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC- 195 +KGD+ SLSIAAASIIAKVTRDRLM+ YPDY F+ H GY T H + IK+KG Sbjct: 135 VKGDAKSLSIAAASIIAKVTRDRLMKDLANIYPDYSFEKHKGYGTKTHIEAIKDKGAIEG 194 Query: 196 IHRLTF 201 +HR F Sbjct: 195 VHRKVF 200 >gi|212703538|ref|ZP_03311666.1| hypothetical protein DESPIG_01583 [Desulfovibrio piger ATCC 29098] gi|212673038|gb|EEB33521.1| hypothetical protein DESPIG_01583 [Desulfovibrio piger ATCC 29098] Length = 211 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 80/195 (41%), Positives = 105/195 (53%), Gaps = 18/195 (9%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AGIDE GRG LAGPVV AA+IL G+ DSK +S +RE L I A+ + Sbjct: 2 AGIDEAGRGCLAGPVVAAAVILPEAYDLPGLTDSKALSAAQREHLAPLIRQCALAWGLGV 61 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS-IPE---------------DL 129 ID+ NI +AT +A+ AV +L+ P L+DG +PE DL Sbjct: 62 VWPATIDRINILQATFEAMSRAVASLKRRPNLLLVDGNKTVPEPVLLPHWRKRHADATDL 121 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P + AV+ GDS +I+AAS++AK RD LM + +P YGF H GY TA H + + Sbjct: 122 P-RQNAVVGGDSSVPAISAASVLAKTYRDMLMEHLDRHHPGYGFARHKGYGTADHYEALH 180 Query: 190 EKGPSCIHRLTFRPL 204 GP HRLTFR + Sbjct: 181 RLGPCRQHRLTFRGV 195 >gi|31794078|ref|NP_856571.1| ribonuclease HII [Mycobacterium bovis AF2122/97] gi|39932282|sp|Q7TXM7|RNH2_MYCBO RecName: Full=Ribonuclease HII; Short=RNase HII gi|31619673|emb|CAD96613.1| PROBABLE RIBONUCLEASE HII PROTEIN RNHB (RNASE HII) [Mycobacterium bovis AF2122/97] Length = 264 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 79/198 (39%), Positives = 114/198 (57%), Gaps = 4/198 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREEL 71 LE+ + + PVAG+DEVGRGA AGP+VVAA +L P I ++DSKK+S + RE+L Sbjct: 23 LESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDDSKKLSEQAREKL 82 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ + +D+H +H A ++ + AV L V P L DG +P LP Sbjct: 83 FPLICRYAVAYHVVFIPSAEVDRHGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVP-GLP 141 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+ + IAAAS++AKV+RDR+M +P YGF H GY T H + + Sbjct: 142 MPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAHSRALAR 201 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP HR +F +R ++ Sbjct: 202 LGPCPQHRYSFINVRRVA 219 >gi|294340693|emb|CAZ89085.1| Ribonuclease HII (RNase HII) [Thiomonas sp. 3As] Length = 214 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 82/184 (44%), Positives = 116/184 (63%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG DEVGRG AGPVV AA++LDP + G+ DSK +S ++REEL I + ++ SI Sbjct: 17 LIAGCDEVGRGPWAGPVVAAAVVLDPAHPIAGLADSKLLSARRREELDAHIRAYSLAWSI 76 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + +S + ID+ NI +ATL A+ AV L L+DG P+ + A++ GD++ Sbjct: 77 AESSVEEIDQRNILQATLLAMQRAVAALPCKIDLLLVDGNQTPQ-VAMPCRAIVGGDAVQ 135 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASIIAKV RDRLM ++YP YGF+ H GY TA H+ + GP +HR +F P Sbjct: 136 PAISAASIIAKVYRDRLMTELAQRYPGYGFERHSGYGTAAHRAALLTLGPCAVHRRSFAP 195 Query: 204 LRNL 207 +R L Sbjct: 196 IRRL 199 >gi|94267010|ref|ZP_01290655.1| Ribonuclease H [delta proteobacterium MLMS-1] gi|93452284|gb|EAT02925.1| Ribonuclease H [delta proteobacterium MLMS-1] Length = 236 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 85/200 (42%), Positives = 118/200 (59%), Gaps = 6/200 (3%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 E + + VAG DE GRG LAGPVV A ++L + DSK++S +R E Sbjct: 18 TLAFERSLWAQGYRLVAGTDEAGRGPLAGPVVAACVVLPVDCRSP-FQDSKQLSASRRRE 76 Query: 71 LYEKITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPE 127 L ++ + A + + AS ID NI +A+L A+ AV LQ P L+DG+ +IP Sbjct: 77 LEAELNALPGAAVGVGIASVAEIDGLNILQASLLAMRKAVTALQPAPDFLLVDGKFTIPL 136 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +LP A+IKGDS S SIAAASI+AK RD+LM H++YP Y F H GY TA+H+++ Sbjct: 137 ELP--QQALIKGDSRSASIAAASIVAKERRDQLMADLHRQYPQYNFIQHKGYATAEHRRL 194 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 + GP HR +F+P+R L Sbjct: 195 LHRFGPCPEHRRSFKPVREL 214 >gi|227488611|ref|ZP_03918927.1| ribonuclease HII [Corynebacterium glucuronolyticum ATCC 51867] gi|227543214|ref|ZP_03973263.1| ribonuclease HII [Corynebacterium glucuronolyticum ATCC 51866] gi|227091505|gb|EEI26817.1| ribonuclease HII [Corynebacterium glucuronolyticum ATCC 51867] gi|227181023|gb|EEI61995.1| ribonuclease HII [Corynebacterium glucuronolyticum ATCC 51866] Length = 208 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 76/195 (38%), Positives = 106/195 (54%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREELY 72 E + + + PVAG+DE GRGA AGP+ +AA IL IP ++DSKK++ +R L+ Sbjct: 5 EVALAKAGLGPVAGVDEAGRGACAGPITIAACILPDQFIPELELLDDSKKLTPARRAHLF 64 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I AI I S ID+ I A + + AV L V P L D +P Sbjct: 65 PLIKRHAIAWHIVHISAHDIDERGITDANISGMRRAVGGLAVRPGYVLTDAWWVP-GFAQ 123 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + VI GD+ + IAAAS++AK +RD++M +YP YGF H GY TAKH ++ Sbjct: 124 PSLPVIGGDATARCIAAASVLAKYSRDQIMIDYDAQYPGYGFAGHKGYGTAKHMDAVRHH 183 Query: 192 GPSCIHRLTFRPLRN 206 G S IHR ++ +RN Sbjct: 184 GASPIHRYSYSNVRN 198 >gi|313754412|pdb|3O3G|A Chain A, T. Maritima Rnase H2 In Complex With Nucleic Acid Substrate And Calcium Ions Length = 222 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 82/198 (41%), Positives = 108/198 (54%), Gaps = 18/198 (9%) Query: 17 MVREKNMWPVAGIDEVGRGALAGP-------VVVAAIILDPNNIPFGINDSKKISHKKRE 69 + +K VAG+DE GRG LAGP + GINDSK++S KRE Sbjct: 4 ELYKKEFGIVAGVDEAGRGCLAGPVVAAAVVL---------EKEIEGINDSKQLSPAKRE 54 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L ++I A + I AS + ID +NI AT A+ A+ENL V P L+DG+ I +L Sbjct: 55 RLLDEIMEKAAVGIGIASPEEIDLYNIFNATKLAMNRALENLSVKPSFVLVDGKGI--EL 112 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++KGD S I AASI+AKV RDRLM H+ YP + F H GY T +H I+ Sbjct: 113 SVPGTCLVKGDQKSKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKHKGYATKEHLNEIR 172 Query: 190 EKGPSCIHRLTFRPLRNL 207 + G IHRL+F P+ L Sbjct: 173 KNGVLPIHRLSFEPVLEL 190 >gi|115526417|ref|YP_783328.1| ribonuclease HII [Rhodopseudomonas palustris BisA53] gi|122294758|sp|Q07I86|RNH2_RHOP5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|115520364|gb|ABJ08348.1| RNase HII [Rhodopseudomonas palustris BisA53] Length = 278 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 1/195 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + ++ +WPVAG DE GRG LAGPVV AA++LDP IP G++DSKK++ +KRE Sbjct: 57 PSFRRERALLKRGIWPVAGCDEAGRGPLAGPVVAAAVVLDPKRIPKGLDDSKKLTAEKRE 116 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+E+I ++A +++ AS I++ NI +A+L A+ AV+ L P+ +DGR Sbjct: 117 ALFEEICATASFAVAYASPARIERDNILRASLWALARAVQALPEPPKHVFVDGRD-KIIT 175 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 PC AVI GD++ LSIAAASIIAKV RDRLM + P YGFD H GY +H + Sbjct: 176 PCDCDAVIGGDALVLSIAAASIIAKVARDRLMCRLAEDCPGYGFDHHKGYGVPEHLAALD 235 Query: 190 EKGPSCIHRLTFRPL 204 GP+ HR F P+ Sbjct: 236 RLGPTKHHRKLFAPV 250 >gi|325971128|ref|YP_004247319.1| ribonuclease H [Spirochaeta sp. Buddy] gi|324026366|gb|ADY13125.1| Ribonuclease H [Spirochaeta sp. Buddy] Length = 209 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 83/199 (41%), Positives = 112/199 (56%), Gaps = 9/199 (4%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + E F EA + G+DE GRG LAGPVV AA+IL P+ +NDSKK+S Sbjct: 1 MEESLLFSFEAE-----NQVLCGLDEAGRGPLAGPVVAAAVILGPDFPTEILNDSKKLSE 55 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDG 122 K+R E I A+ ++ A+ Q ID+ NI +A+L A+ A E + Q+ AL+DG Sbjct: 56 KQRLEAEIVIKQKALYWAVGLATAQEIDRINILQASLLAMKRAYEKISSQIHVDVALVDG 115 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 P +L C A++ GD++ I AASI+AK RDR M + H K+P Y F H GYPT Sbjct: 116 NQRP-NLDCITQAIVGGDALIPQIMAASILAKNQRDRYMVLCHTKWPFYNFAKHKGYPTE 174 Query: 183 KHQQVIKEKGPSCIHRLTF 201 +H+ G S IHR TF Sbjct: 175 EHRSACLLYGLSPIHRRTF 193 >gi|326803548|ref|YP_004321366.1| ribonuclease HII [Aerococcus urinae ACS-120-V-Col10a] gi|326651055|gb|AEA01238.1| ribonuclease HII [Aerococcus urinae ACS-120-V-Col10a] Length = 258 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 81/195 (41%), Positives = 120/195 (61%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 ++EA + K +AG+DEVGRG LAGPVV AA+IL P F + DSK++S +R+ L Sbjct: 64 QIEADLHAKGFQYIAGVDEVGRGPLAGPVVTAAVILKPKRPLFDLRDSKQLSQVQRQNLI 123 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I +++ I+I ++ ID++NI AT ++ ++++ L LID + L Sbjct: 124 PLIKENSVAIAIDVQDNEAIDRYNILNATKRSMMNSIKKLSPQAEYVLIDAVDL--SLNI 181 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD +IAAASIIAK RD++MR K+YP YGFD +VGY T +H + I+ Sbjct: 182 PHSSLIKGDDRVSAIAAASIIAKEYRDQIMRDYAKRYPAYGFDRNVGYGTKEHLKAIETY 241 Query: 192 GPSCIHRLTFRPLRN 206 GP IHR +F P++N Sbjct: 242 GPCPIHRKSFAPIKN 256 >gi|262276832|ref|ZP_06054625.1| ribonuclease HII [alpha proteobacterium HIMB114] gi|262223935|gb|EEY74394.1| ribonuclease HII [alpha proteobacterium HIMB114] Length = 199 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 74/184 (40%), Positives = 105/184 (57%), Gaps = 1/184 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 V G+DEVGRG LAGPVV AA+IL + ++DSKK+S KRE+ +E + + + Sbjct: 13 FVVGVDEVGRGPLAGPVVSAAVILPLDFDYKCLDDSKKLSKVKREKAFEILKKKSKFKLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-ALIDGRSIPEDLPCQAFAVIKGDSIS 143 A IDK NI +A+L ++ AV+ + L+DG + IKGD+ Sbjct: 73 IAEVDEIDKINILQASLISMKRAVDQFDLPKDHKILVDGPWSFDKTNQNIITKIKGDAKY 132 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SIAAASIIAKV RD++M K + Y +D++ GY T KH + IKE G + HR +F P Sbjct: 133 PSIAAASIIAKVYRDQIMSKLSKNFVQYSWDTNSGYGTQKHLKAIKEHGITVHHRKSFAP 192 Query: 204 LRNL 207 + + Sbjct: 193 IHKI 196 >gi|237740891|ref|ZP_04571372.1| ribonuclease HII [Fusobacterium sp. 4_1_13] gi|256846832|ref|ZP_05552287.1| ribonuclease HII [Fusobacterium sp. 3_1_36A2] gi|229431188|gb|EEO41400.1| ribonuclease HII [Fusobacterium sp. 4_1_13] gi|256717798|gb|EEU31356.1| ribonuclease HII [Fusobacterium sp. 3_1_36A2] Length = 214 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 82/191 (42%), Positives = 116/191 (60%), Gaps = 7/191 (3%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKIT 76 + + V G+DE GRG LAGPVV AA+IL + INDSKK++ K RE+LY+ I Sbjct: 11 LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSKKLTEKTREKLYDIIM 70 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPC 131 + +++ ++ + IDK NI A A+ A+++L+ I + L+DG ++ Sbjct: 71 KNFYVAVGVSTVEEIDKLNILNADFLAMRRALKDLENIKKDKKEYTVLVDGNLKIKEYTG 130 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++KGD+ SLSIAAASIIAKVTRDRLM+ YPDY F+ H GY T H +VIK+K Sbjct: 131 KQLPIVKGDAKSLSIAAASIIAKVTRDRLMKDLASVYPDYHFEKHKGYGTKVHIEVIKDK 190 Query: 192 GPSC-IHRLTF 201 G +HR F Sbjct: 191 GAIEGVHRKVF 201 >gi|118617628|ref|YP_905960.1| ribonuclease HII [Mycobacterium ulcerans Agy99] gi|166226630|sp|A0PQ70|RNH2_MYCUA RecName: Full=Ribonuclease HII; Short=RNase HII gi|118569738|gb|ABL04489.1| ribonuclease HII protein RnhB [Mycobacterium ulcerans Agy99] Length = 239 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 79/198 (39%), Positives = 113/198 (57%), Gaps = 4/198 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE+ ++ + PVAG+DEVGRGA AGP+VVAA L PN ++DSKK++ K RE+L Sbjct: 20 LESALQRSGLGPVAGVDEVGRGACAGPLVVAACALGPNRYESLAALDDSKKLTEKTREKL 79 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ + +D+ +H A ++ + AV L V P L DG +P L Sbjct: 80 FPLICRYALAYHVVFIPSVEVDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP-GLS 138 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+ + IAAAS++AKV+RDRLM +YP YGF H GY T H + + Sbjct: 139 VPSLPVIGGDAAAACIAAASVLAKVSRDRLMVAMDTQYPGYGFAEHKGYSTRAHTLALTQ 198 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP HR +F +R ++ Sbjct: 199 LGPCPEHRRSFINVRRVA 216 >gi|169830848|ref|YP_001716830.1| ribonuclease HII [Candidatus Desulforudis audaxviator MP104C] gi|169637692|gb|ACA59198.1| Ribonuclease H [Candidatus Desulforudis audaxviator MP104C] Length = 267 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 78/191 (40%), Positives = 109/191 (57%), Gaps = 1/191 (0%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + PVAG DE GRG LAGPVV AA++L + DSK+++ R L Sbjct: 65 YGYERALEAAGCGPVAGTDEAGRGPLAGPVVAAAVVLSRGAAIPELKDSKQLTGPARSRL 124 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++I + I A I + NI +A+L A+ A++ L IP L+DG P Sbjct: 125 ADEIRARCHAWGIGVADVGEIARLNILRASLLAMRRALDGLGFIPGWVLVDGSFTVPLFP 184 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A++KGD +S S+AAASI+AKV RD LM H+ YP+YGFD H GYPT +H Q ++ Sbjct: 185 GPQTALVKGDRVSASVAAASILAKVYRDELMERLHRLYPEYGFDRHKGYPTPEHYQALER 244 Query: 191 KGPSCIHRLTF 201 GP +HR++F Sbjct: 245 YGPCPLHRVSF 255 >gi|296117635|ref|ZP_06836219.1| ribonuclease HII [Corynebacterium ammoniagenes DSM 20306] gi|295969366|gb|EFG82607.1| ribonuclease HII [Corynebacterium ammoniagenes DSM 20306] Length = 223 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 79/194 (40%), Positives = 107/194 (55%), Gaps = 4/194 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 E + + + PVAG+DE GRGA AGP+ +AA IL IP + DSKK+S K+REEL Sbjct: 10 YEVALSKAGLGPVAGVDEAGRGACAGPITIAACILPEKIIPSLATLTDSKKLSAKQREEL 69 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I +A+ SI IDKH I A + + AV L+V PR L D + Sbjct: 70 FPAIQRNALAYSIVHIDPGDIDKHGIQHANVSGMRRAVARLEVRPRYILTDALKV-SGFT 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 V+ GD IAAAS++AKV+RD +M +KYP YG H GY TA H + IK Sbjct: 129 APYLPVVGGDFAIRCIAAASVLAKVSRDHIMEELEEKYPGYGLGKHKGYGTAVHTEAIKT 188 Query: 191 KGPSCIHRLTFRPL 204 G + IHR+++ + Sbjct: 189 LGATAIHRMSYSNV 202 >gi|256028260|ref|ZP_05442094.1| ribonuclease HII [Fusobacterium sp. D11] Length = 234 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 80/194 (41%), Positives = 115/194 (59%), Gaps = 10/194 (5%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKIT 76 + + V G+DE GRG LAGPVV AA+IL + INDSKK++ KKRE+LY+ I Sbjct: 28 LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSKKLTEKKREKLYDIIM 87 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS--------ALIDGRSIPED 128 + +++ ++ + IDK NI A A+ A+++L+ I + L+DG ++ Sbjct: 88 KNFYVAVGISTVEEIDKMNILNADFLAMRRALKDLENIKKDKKDKKEYIVLVDGNLKIKE 147 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + ++KGD+ SLS+AAASIIAKVTRDR M+ YPDY F+ H GY T H + I Sbjct: 148 YSGKQLPIVKGDAKSLSVAAASIIAKVTRDRFMKDLANIYPDYSFEKHKGYGTKAHIEAI 207 Query: 189 KEKGPSC-IHRLTF 201 K+KG +HR F Sbjct: 208 KDKGAIEGVHRKVF 221 >gi|237745358|ref|ZP_04575839.1| ribonuclease HII [Fusobacterium sp. 7_1] gi|229432587|gb|EEO42799.1| ribonuclease HII [Fusobacterium sp. 7_1] Length = 214 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 80/191 (41%), Positives = 115/191 (60%), Gaps = 7/191 (3%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKIT 76 + + V G+DE GRG LAGPVV AA+IL + INDSKK++ KKRE+LY+ I Sbjct: 11 LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSKKLTEKKREKLYDIIM 70 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPC 131 + +++ ++ + IDK NI A A+ A+++L+ I + L+DG ++ Sbjct: 71 KNFYVAVGISTVEEIDKMNILNADFLAMRRALKDLENIKKDKKEYIVLVDGNLKIKEYSG 130 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++KGD+ SLS+AAASIIAKVTRDR M+ YPDY F+ H GY T H + IK+K Sbjct: 131 KQLPIVKGDAKSLSVAAASIIAKVTRDRFMKDLANIYPDYSFEKHKGYGTKAHIEAIKDK 190 Query: 192 GPSC-IHRLTF 201 G +HR F Sbjct: 191 GAIEGVHRKVF 201 >gi|163814002|ref|ZP_02205395.1| hypothetical protein COPEUT_00154 [Coprococcus eutactus ATCC 27759] gi|158450696|gb|EDP27691.1| hypothetical protein COPEUT_00154 [Coprococcus eutactus ATCC 27759] Length = 255 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 87/191 (45%), Positives = 115/191 (60%), Gaps = 4/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE E + + GIDEVGRG LAGPVV AA+IL +NDSK+IS +KRE L Sbjct: 63 FEYERKYSDNEF--ICGIDEVGRGPLAGPVVAAAVILPKECDILYLNDSKQISAQKRELL 120 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y++I A+ + + A+ ID NI A +A+ A+ L V P+ L D +IP + Sbjct: 121 YDEIMEKAVAVGVGMANQDVIDDINILNADYEAMKQAISKLSVRPQLLLNDAVNIP-GVD 179 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD++S SIAAASIIAKVTRDRLM YP YGF ++GY TA+H + ++ Sbjct: 180 IPQVGIIKGDTLSASIAAASIIAKVTRDRLMVEYDSIYPGYGFARNMGYGTAEHIKALET 239 Query: 191 KGPSCIHRLTF 201 GP IHR +F Sbjct: 240 IGPCAIHRRSF 250 >gi|15618043|ref|NP_224327.1| ribonuclease HII [Chlamydophila pneumoniae CWL029] gi|15835655|ref|NP_300179.1| ribonuclease HII [Chlamydophila pneumoniae J138] gi|16752925|ref|NP_445196.1| ribonuclease HII [Chlamydophila pneumoniae AR39] gi|33241455|ref|NP_876396.1| ribonuclease HII [Chlamydophila pneumoniae TW-183] gi|7227930|sp|Q9Z962|RNH2_CHLPN RecName: Full=Ribonuclease HII; Short=RNase HII gi|4376382|gb|AAD18272.1| Ribonuclease HII [Chlamydophila pneumoniae CWL029] gi|8163472|gb|AAF73691.1| ribonuclease HII [Chlamydophila pneumoniae AR39] gi|8978493|dbj|BAA98330.1| ribonuclease HII [Chlamydophila pneumoniae J138] gi|33235963|gb|AAP98053.1| ribonuclease H II [Chlamydophila pneumoniae TW-183] Length = 214 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 84/197 (42%), Positives = 121/197 (61%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + ++ VAGIDE GRG LAGPVV +A IL + G+NDSKK+S K+R ++ Sbjct: 16 AFEKELVSEDFSVVAGIDEAGRGPLAGPVVASACILPKGKVFPGVNDSKKLSPKQRAQVR 75 Query: 73 EKITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + + I S + ID+ NI +AT +A+ A+ +L + P L+DG +P D+P Sbjct: 76 DALMQDPEVCFGIGVISVERIDQVNILEATKEAMLQAISSLPISPDILLVDGLYLPHDIP 135 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 C+ +I+GD+ S SIAAASI+AK RD LM H+ YP+YGFD H GY T+ H + I+ Sbjct: 136 CK--KIIQGDAKSASIAAASILAKEHRDDLMLQLHRLYPEYGFDRHKGYGTSLHVEAIRR 193 Query: 191 KGPSCIHRLTFRPLRNL 207 GPS HR +F P++ + Sbjct: 194 YGPSPCHRKSFSPIKQM 210 >gi|303246153|ref|ZP_07332434.1| Ribonuclease H [Desulfovibrio fructosovorans JJ] gi|302492549|gb|EFL52420.1| Ribonuclease H [Desulfovibrio fructosovorans JJ] Length = 206 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 80/188 (42%), Positives = 107/188 (56%), Gaps = 8/188 (4%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DE GRG LAGPVV A+IL + DSKK+S +RE L I + AI ++ Sbjct: 6 LIAGVDEAGRGCLAGPVVAGAVILPEAYDLPFLTDSKKLSAARREGLAPAIKAQAIAWAV 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIPED------LPCQAFAV 136 A ID+ NI +AT A+ AV L+V P + IDG IP P A+ Sbjct: 66 GMAWPVEIDRINILQATFAAMSRAVRALRVRPEALKIDGNKRIPAAHLANIAAPPPQEAI 125 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 I GD +I+AASI+AK +RD+LM I +++P YGF SH GY H ++E GP + Sbjct: 126 IGGDLSVPAISAASILAKTSRDKLMTIFDRQFPGYGFASHKGYGAKAHLAALRELGPCRL 185 Query: 197 HRLTFRPL 204 HRLTFR + Sbjct: 186 HRLTFRGV 193 >gi|15610039|ref|NP_217418.1| ribonuclease HII [Mycobacterium tuberculosis H37Rv] gi|15842445|ref|NP_337482.1| ribonuclease HII [Mycobacterium tuberculosis CDC1551] gi|121638783|ref|YP_979007.1| ribonuclease HII [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662746|ref|YP_001284269.1| ribonuclease HII [Mycobacterium tuberculosis H37Ra] gi|148824091|ref|YP_001288845.1| ribonuclease HII [Mycobacterium tuberculosis F11] gi|167969531|ref|ZP_02551808.1| ribonuclease HII [Mycobacterium tuberculosis H37Ra] gi|215404876|ref|ZP_03417057.1| ribonuclease HII [Mycobacterium tuberculosis 02_1987] gi|215412745|ref|ZP_03421457.1| ribonuclease HII [Mycobacterium tuberculosis 94_M4241A] gi|215428343|ref|ZP_03426262.1| ribonuclease HII [Mycobacterium tuberculosis T92] gi|215431850|ref|ZP_03429769.1| ribonuclease HII [Mycobacterium tuberculosis EAS054] gi|215447164|ref|ZP_03433916.1| ribonuclease HII [Mycobacterium tuberculosis T85] gi|218754655|ref|ZP_03533451.1| ribonuclease HII [Mycobacterium tuberculosis GM 1503] gi|219558926|ref|ZP_03538002.1| ribonuclease HII [Mycobacterium tuberculosis T17] gi|224991275|ref|YP_002645964.1| ribonuclease HII [Mycobacterium bovis BCG str. Tokyo 172] gi|253798010|ref|YP_003031011.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis KZN 1435] gi|254365542|ref|ZP_04981587.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium tuberculosis str. Haarlem] gi|254551974|ref|ZP_05142421.1| ribonuclease HII [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187921|ref|ZP_05765395.1| ribonuclease HII [Mycobacterium tuberculosis CPHL_A] gi|260202037|ref|ZP_05769528.1| ribonuclease HII [Mycobacterium tuberculosis T46] gi|260206220|ref|ZP_05773711.1| ribonuclease HII [Mycobacterium tuberculosis K85] gi|289444457|ref|ZP_06434201.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T46] gi|289448567|ref|ZP_06438311.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis CPHL_A] gi|289553309|ref|ZP_06442519.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis KZN 605] gi|289571090|ref|ZP_06451317.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T17] gi|289575607|ref|ZP_06455834.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis K85] gi|289746701|ref|ZP_06506079.1| ribonuclease HII [Mycobacterium tuberculosis 02_1987] gi|289751567|ref|ZP_06510945.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T92] gi|289755014|ref|ZP_06514392.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis EAS054] gi|289759022|ref|ZP_06518400.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T85] gi|289763078|ref|ZP_06522456.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium tuberculosis GM 1503] gi|294994002|ref|ZP_06799693.1| ribonuclease HII [Mycobacterium tuberculosis 210] gi|297635520|ref|ZP_06953300.1| ribonuclease HII [Mycobacterium tuberculosis KZN 4207] gi|297732519|ref|ZP_06961637.1| ribonuclease HII [Mycobacterium tuberculosis KZN R506] gi|298526371|ref|ZP_07013780.1| ribonuclease HII [Mycobacterium tuberculosis 94_M4241A] gi|306777190|ref|ZP_07415527.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu001] gi|306781097|ref|ZP_07419434.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu002] gi|306785737|ref|ZP_07424059.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu003] gi|306789776|ref|ZP_07428098.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu004] gi|306794590|ref|ZP_07432892.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu005] gi|306798833|ref|ZP_07437135.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu006] gi|306804679|ref|ZP_07441347.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu008] gi|306808871|ref|ZP_07445539.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu007] gi|306968970|ref|ZP_07481631.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu009] gi|306973307|ref|ZP_07485968.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu010] gi|307081015|ref|ZP_07490185.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu011] gi|307085614|ref|ZP_07494727.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu012] gi|313659851|ref|ZP_07816731.1| ribonuclease HII [Mycobacterium tuberculosis KZN V2475] gi|1710612|sp|Q10793|RNH2_MYCTU RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226625|sp|A1KMP6|RNH2_MYCBP RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226629|sp|A5U6Q7|RNH2_MYCTA RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807981|sp|C1AG17|RNH2_MYCBT RecName: Full=Ribonuclease HII; Short=RNase HII gi|1403423|emb|CAA98340.1| PROBABLE RIBONUCLEASE HII PROTEIN RNHB (RNASE HII) [Mycobacterium tuberculosis H37Rv] gi|13882748|gb|AAK47296.1| ribonuclease HII [Mycobacterium tuberculosis CDC1551] gi|121494431|emb|CAL72912.1| Probable ribonuclease HII protein rnhB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134151055|gb|EBA43100.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium tuberculosis str. Haarlem] gi|148506898|gb|ABQ74707.1| ribonuclease HII [Mycobacterium tuberculosis H37Ra] gi|148722618|gb|ABR07243.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium tuberculosis F11] gi|224774390|dbj|BAH27196.1| ribonuclease HII [Mycobacterium bovis BCG str. Tokyo 172] gi|253319513|gb|ACT24116.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis KZN 1435] gi|289417376|gb|EFD14616.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T46] gi|289421525|gb|EFD18726.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis CPHL_A] gi|289437941|gb|EFD20434.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis KZN 605] gi|289540038|gb|EFD44616.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis K85] gi|289544844|gb|EFD48492.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T17] gi|289687229|gb|EFD54717.1| ribonuclease HII [Mycobacterium tuberculosis 02_1987] gi|289692154|gb|EFD59583.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T92] gi|289695601|gb|EFD63030.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis EAS054] gi|289710584|gb|EFD74600.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium tuberculosis GM 1503] gi|289714586|gb|EFD78598.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T85] gi|298496165|gb|EFI31459.1| ribonuclease HII [Mycobacterium tuberculosis 94_M4241A] gi|308214472|gb|EFO73871.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu001] gi|308326083|gb|EFP14934.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu002] gi|308329647|gb|EFP18498.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu003] gi|308333786|gb|EFP22637.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu004] gi|308337180|gb|EFP26031.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu005] gi|308340911|gb|EFP29762.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu006] gi|308344823|gb|EFP33674.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu007] gi|308348771|gb|EFP37622.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu008] gi|308353472|gb|EFP42323.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu009] gi|308357337|gb|EFP46188.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu010] gi|308361221|gb|EFP50072.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu011] gi|308364841|gb|EFP53692.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu012] gi|323718512|gb|EGB27683.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis CDC1551A] gi|326904516|gb|EGE51449.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis W-148] gi|328457784|gb|AEB03207.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis KZN 4207] Length = 264 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 78/198 (39%), Positives = 113/198 (57%), Gaps = 4/198 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREEL 71 LE+ + + PVAG+DEVGRGA AGP+VVAA +L P I ++DSKK+S + RE+L Sbjct: 23 LESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDDSKKLSEQAREKL 82 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ + +D+ +H A ++ + AV L V P L DG +P LP Sbjct: 83 FPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVP-GLP 141 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+ + IAAAS++AKV+RDR+M +P YGF H GY T H + + Sbjct: 142 MPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAHSRALAR 201 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP HR +F +R ++ Sbjct: 202 LGPCPQHRYSFINVRRVA 219 >gi|260495645|ref|ZP_05815769.1| ribonuclease HII [Fusobacterium sp. 3_1_33] gi|260196828|gb|EEW94351.1| ribonuclease HII [Fusobacterium sp. 3_1_33] Length = 214 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 82/191 (42%), Positives = 116/191 (60%), Gaps = 7/191 (3%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKIT 76 + + V G+DE GRG LAGPVV AA+IL + INDSKK++ KKRE+LY+ I Sbjct: 11 LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSKKLTEKKREKLYDIIM 70 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPC 131 + +++ ++ + IDK NI A A+ A+++L+ I + L+DG ++ Sbjct: 71 KNFYVAVGISTVEEIDKMNILNADFLAMRRALKDLENIKKDKKEYIVLVDGNLKIKEYSG 130 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++KGD+ SLS+AAASIIAKVTRDRLM+ YPDY F+ H GY T H +VIK K Sbjct: 131 KQLPIVKGDAKSLSVAAASIIAKVTRDRLMKDLANTYPDYSFEKHKGYGTKAHIEVIKNK 190 Query: 192 GPSC-IHRLTF 201 G +HR F Sbjct: 191 GAIEGVHRKVF 201 >gi|188992332|ref|YP_001904342.1| ribonuclease HII [Xanthomonas campestris pv. campestris str. B100] gi|189043675|sp|B0RW80|RNH2_XANCB RecName: Full=Ribonuclease HII; Short=RNase HII gi|167734092|emb|CAP52298.1| unnamed protein product [Xanthomonas campestris pv. campestris] Length = 240 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 82/185 (44%), Positives = 118/185 (63%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-I 81 +AG+DE GRG LAGPV VAA++ DP G++DSK++S ++RE+LY +I A+ Sbjct: 31 RLIAGVDEAGRGPLAGPVAVAAVVFDPAKPRINGLDDSKQLSAERREQLYARIVDRALAW 90 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S+ + ID+ NI++AT+ + AVE + + A IDG +P+ LP A A+I GD+ Sbjct: 91 SVVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPFPAEALIGGDA 150 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + +I AASI+AKVTRDRLMR H ++P+Y FD H GY T H ++ GP HR +F Sbjct: 151 LDRAIMAASIVAKVTRDRLMRELHAQHPEYRFDLHKGYSTPAHLAALQTHGPCPQHRRSF 210 Query: 202 RPLRN 206 P+R Sbjct: 211 APVRR 215 >gi|225848014|ref|YP_002728177.1| ribonuclease HII [Sulfurihydrogenibium azorense Az-Fu1] gi|225644327|gb|ACN99377.1| ribonuclease HII [Sulfurihydrogenibium azorense Az-Fu1] Length = 193 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 3/191 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 LE + + + GIDE GRG +AGP+V++A+I N PF DSKK+S K+R+ LY Sbjct: 3 SLEKKIYKNGYKYIVGIDEAGRGPIAGPLVISAVIFKYNQKPFVYADSKKLSPKERDSLY 62 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I +A+ SI ++ ID I A + IY A+E L + P A++D +I DL Sbjct: 63 NEILENALDYSIVVVDNEKIDSLGISSALKEGIYKAIEKLYIKPDYAILDFINI--DLDF 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++ K D +S ++AAASI++K+TRDR+M K YP++ FD H GYPT +H Q IK Sbjct: 121 DSISIPKADEVSHTVAAASILSKITRDRIMEDYSKIYPNFSFDKHKGYPTKQHYQEIKMY 180 Query: 192 GPSCIHRLTFR 202 G + IHR ++R Sbjct: 181 GITPIHRKSYR 191 >gi|307152014|ref|YP_003887398.1| Ribonuclease H [Cyanothece sp. PCC 7822] gi|306982242|gb|ADN14123.1| Ribonuclease H [Cyanothece sp. PCC 7822] Length = 215 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 83/212 (39%), Positives = 129/212 (60%), Gaps = 7/212 (3%) Query: 5 SIPERPHFELEAMVR-EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGIND 59 + P P F++ + + +AG+DEVGRGAL GPV A+I+ + +P G+ D Sbjct: 2 TKPILPTFDISLLPEVKSQETLIAGVDEVGRGALFGPVAAGAVIIPVSALPQLTALGVKD 61 Query: 60 SKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 SK++S KKR EL +I + A+ +S A+ ID+ NI +A+L A+Y AV L+V Sbjct: 62 SKQLSPKKRSELAAQIKAMALDFHVSFATVMDIDRINILQASLLAMYRAVAKLKVEAAVC 121 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 L+DG+ +L + +++GD S IAAASI+AKV RD+L+ +KYP Y ++ G Sbjct: 122 LVDGKQPIPNLAIRQENIVRGDERSPVIAAASILAKVWRDQLIVRLARKYPHYDLIANKG 181 Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPL-RNLSV 209 Y T +H++ + + GPS HRL+FRP ++LS+ Sbjct: 182 YGTIRHREALLKYGPSPQHRLSFRPCQKSLSI 213 >gi|332799159|ref|YP_004460658.1| Ribonuclease H [Tepidanaerobacter sp. Re1] gi|332696894|gb|AEE91351.1| Ribonuclease H [Tepidanaerobacter sp. Re1] Length = 210 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 89/199 (44%), Positives = 119/199 (59%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ E ++++ VAG+DE GRG LAGPVV AA+IL + + DSKKIS KKRE++ Sbjct: 14 YDRERKLKQEGFTLVAGVDEAGRGPLAGPVVAAAVILVLDTEILNLKDSKKISEKKREKV 73 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YE I A+ + YID HNI +TL A+ +AVE L V P L+D IP D+ Sbjct: 74 YEDIKGKAVAYAYDVIDADYIDNHNILNSTLMAMKNAVEKLPVKPEYILVDALKIP-DIT 132 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 VI GD+I IAAASIIAKV RDR+MR YP+YGF + GY T +H I++ Sbjct: 133 IPQEFVIHGDNICACIAAASIIAKVERDRIMRKYDLVYPEYGFIKNKGYGTKEHIDSIRK 192 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G IHR +F ++ L + Sbjct: 193 HGICPIHRRSFS-VKGLEI 210 >gi|153007852|ref|YP_001369067.1| ribonuclease HII [Ochrobactrum anthropi ATCC 49188] gi|166226633|sp|A6WW84|RNH2_OCHA4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|151559740|gb|ABS13238.1| Ribonuclease H [Ochrobactrum anthropi ATCC 49188] Length = 220 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 99/203 (48%), Positives = 132/203 (65%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 IP P F E + + + + GIDE GRG LAGPVV AA++LD +N+P G++DSK+++ Sbjct: 13 DIPLAPDFSEEKRLLARGLKHIVGIDEAGRGPLAGPVVAAAVVLDIDNLPNGLDDSKRLT 72 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KRE LYE I AI +S++S S + ID +I KA L+A+ A L + P ALIDGR Sbjct: 73 AVKREALYETILEKAITVSVASLSARSIDASDIRKAALEAMRRASVGLTLQPCHALIDGR 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P LPC A++KGD S+SIAAASI+AKVTRDR+M A +P YG + H GY T K Sbjct: 133 DVPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATVK 192 Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205 H+ I+ GP IHR TF P++ Sbjct: 193 HRAAIETTGPVPGIHRYTFAPIK 215 >gi|157825403|ref|YP_001493123.1| ribonuclease HII [Rickettsia akari str. Hartford] gi|166226646|sp|A8GMJ0|RNH2_RICAH RecName: Full=Ribonuclease HII; Short=RNase HII gi|157799361|gb|ABV74615.1| ribonuclease HII [Rickettsia akari str. Hartford] Length = 193 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 89/191 (46%), Positives = 117/191 (61%), Gaps = 5/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + VAGIDE GRG LAGPVV +A+I+D NI GI DSKK+S KKR L Sbjct: 6 LHFEKKYHN---YIVAGIDEAGRGPLAGPVVASAVIIDNANIIHGIKDSKKLSKKKRALL 62 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 YE+ITS+ + +++ +H IDK NI +AT A A NL V P L+DG D Sbjct: 63 YEQITSNYVWAVAIITHTEIDKINILEATKKACSIAAANLNVKPEIVLVDGNMQFSD--E 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +++ GD++SLSIAAASIIAKVTRDRLM K+P Y + + GY T +H + I + Sbjct: 121 RFISIVNGDNLSLSIAAASIIAKVTRDRLMLELSAKFPQYLWHKNSGYGTKEHLEAINKY 180 Query: 192 GPSCIHRLTFR 202 G S HR +F+ Sbjct: 181 GLSPYHRKSFK 191 >gi|124267155|ref|YP_001021159.1| ribonuclease HII [Methylibium petroleiphilum PM1] gi|189043524|sp|A2SH85|RNH22_METPP RecName: Full=Ribonuclease HII 2; Short=RNase HII 2 gi|124259930|gb|ABM94924.1| RNase HII [Methylibium petroleiphilum PM1] Length = 217 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 82/187 (43%), Positives = 115/187 (61%), Gaps = 2/187 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS- 82 +AG+DE GRG LAGPVV AA+ILD G+ DSK +S + RE L+++I + A+ Sbjct: 28 GLLAGVDEAGRGPLAGPVVAAAVILDDVQPIRGLGDSKVLSERVRERLFDEIRAKALCCC 87 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ AS + ID NI +ATL A+ AV L++ P L+DG +P L A A++KGD+ Sbjct: 88 IAEASVEEIDTLNILQATLLAMRRAVAGLRLRPNKVLVDGNRLPV-LQVPAEAIVKGDAK 146 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKV RDRL H+ +P YGF H GYPT H ++ G HR +F Sbjct: 147 VAAISAASILAKVHRDRLCLALHEAHPQYGFAGHKGYPTPDHLAALRVHGACGAHRRSFA 206 Query: 203 PLRNLSV 209 P+R + + Sbjct: 207 PVREVLL 213 >gi|323143575|ref|ZP_08078252.1| ribonuclease HII [Succinatimonas hippei YIT 12066] gi|322416638|gb|EFY07295.1| ribonuclease HII [Succinatimonas hippei YIT 12066] Length = 213 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 77/184 (41%), Positives = 107/184 (58%), Gaps = 1/184 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 V G DE GRG L G VV A +ILDP+ G+ DSKK+S KKR+ L +I +A+ I Sbjct: 19 LVCGADEAGRGPLVGNVVAACVILDPSRPISGLADSKKLSEKKRDALALQIKENALAYGI 78 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + + ID+ NI A+L+A+ A N+ LIDG + D P AV+KGD+ Sbjct: 79 GQCTPKEIDRMNILYASLEAMRRAYVNMHKTCELMLIDGNKLIPDFPLAMQAVVKGDARV 138 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AK RD + K+YP+YGF H GYPTA H +V+ + +R+T+ P Sbjct: 139 PEISAASILAKTERDAQLYALDKQYPEYGFARHKGYPTAAHFEVLHKLPLLSCYRMTYAP 198 Query: 204 LRNL 207 +R L Sbjct: 199 IRKL 202 >gi|256545488|ref|ZP_05472850.1| ribonuclease HII [Anaerococcus vaginalis ATCC 51170] gi|256398884|gb|EEU12499.1| ribonuclease HII [Anaerococcus vaginalis ATCC 51170] Length = 210 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 83/200 (41%), Positives = 120/200 (60%), Gaps = 9/200 (4%) Query: 8 ERPHFE-----LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62 ++P + ++ + EK +AGIDEVGRG LAGPVV A+I+ ++ G+ DSKK Sbjct: 2 KKPRYSEFNDKIKNEIHEK-YELIAGIDEVGRGPLAGPVVACAVIMKKDSHIEGVTDSKK 60 Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 +S K+ ELY+KI +I S A++ IDK NI +AT A+ A+E L+ P+ LID Sbjct: 61 LSKKRMNELYQKIIDDSISYSFGYANNILIDKINIKEATKLAMKDALEGLEKKPQIVLID 120 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 I D + ++KGD +I+ ASI+AKV RD++M K YP Y F+S+VGY T Sbjct: 121 AERI--DTHIKQLNIVKGDLYEYAISCASILAKVRRDKIMENFSKIYPYYSFESNVGYGT 178 Query: 182 AKHQQVIKEKGPSCIHRLTF 201 KH + +++ G IHR TF Sbjct: 179 KKHYEGLEKFGECPIHRKTF 198 >gi|114331990|ref|YP_748212.1| ribonuclease H [Nitrosomonas eutropha C91] gi|122313303|sp|Q0AEI5|RNH2_NITEC RecName: Full=Ribonuclease HII; Short=RNase HII gi|114309004|gb|ABI60247.1| RNase HII [Nitrosomonas eutropha C91] Length = 219 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 79/180 (43%), Positives = 109/180 (60%), Gaps = 3/180 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 + G+DE GRG LAGPV A ++LD + G+ DSK++S K+R L E+I A +I+ Sbjct: 34 IYGVDEAGRGPLAGPVYAACVVLDSCYVINGLADSKQLSEKRRASLAEQIKQHARAWAIA 93 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENL-QVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 SAS + ID+ NI +A++ A+ AV L V L+DG +P+ L + AVI+GDS+ Sbjct: 94 SASVEEIDRLNILQASMLAMRRAVIELMPVSNALILVDGTHVPQ-LDYEVQAVIRGDSLV 152 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AK RD M H+ YP YGFD H GYPT H I+ G + HR +F P Sbjct: 153 AEISAASILAKTARDAEMLRLHEIYPIYGFDRHKGYPTRVHLDAIRLHGITATHRKSFAP 212 >gi|328794509|ref|XP_003252082.1| PREDICTED: ribonuclease HII-like, partial [Apis mellifera] Length = 169 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 81/167 (48%), Positives = 101/167 (60%), Gaps = 2/167 (1%) Query: 42 VVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKAT 100 V AA+ILDPNN G+ DSKK+S KKRE L+E I A+ +I+ AS ID+ NI AT Sbjct: 1 VTAAVILDPNNPIEGLADSKKLSEKKREYLFEVIKEKALAWNIARASVSEIDQLNILHAT 60 Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160 + A+ AV L + P L+DG P D A AV+KGDS+ I AASI+AKVTRDR Sbjct: 61 MLAMQRAVAGLSIKPNLVLVDGNRAP-DFGIAAQAVVKGDSLVQEIGAASILAKVTRDRE 119 Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 M K YP YG H GYPT H I E G + I+R +F P++ L Sbjct: 120 MAELDKIYPQYGLSKHKGYPTQAHLAAIIEHGVNDIYRKSFAPVKRL 166 >gi|116512136|ref|YP_809352.1| ribonuclease HII [Lactococcus lactis subsp. cremoris SK11] gi|123025377|sp|Q02YP2|RNH2_LACLS RecName: Full=Ribonuclease HII; Short=RNase HII gi|116107790|gb|ABJ72930.1| RNase HII [Lactococcus lactis subsp. cremoris SK11] Length = 258 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 83/197 (42%), Positives = 119/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E E + + + +AGIDEVGRGALAGPVV AA+IL N G+NDSKK+ K + Sbjct: 59 LEFEKELYSQEIELIAGIDEVGRGALAGPVVTAAVILPKNCKIRGLNDSKKVPKSKHHAI 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +I A+ I I + ID+ NI++AT A+ AV L + P LID + DLP Sbjct: 119 LSEIQEKALAIGIGIVDAEKIDEVNIYEATKIAMIQAVSKLSLKPEHLLIDAMVL--DLP 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD+ S SIAAASI+AKVTRD +M+ ++P+Y F+ + GY TAKH + + Sbjct: 177 IAQTKIIHGDARSASIAAASIVAKVTRDEMMKDFALEFPEYDFEHNAGYGTAKHLAALTK 236 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR ++ P++++ Sbjct: 237 YGITRIHRKSYEPIKSM 253 >gi|317508413|ref|ZP_07966083.1| ribonuclease HII [Segniliparus rugosus ATCC BAA-974] gi|316253260|gb|EFV12660.1| ribonuclease HII [Segniliparus rugosus ATCC BAA-974] Length = 215 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 74/195 (37%), Positives = 111/195 (56%), Gaps = 4/195 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREE 70 E+++R + VAG+DE GRGA AGP+VVA+ +L P G++DSK+++ +KRE Sbjct: 3 AFESVLRRAGLAAVAGVDEAGRGACAGPLVVASCVLKPRSARALPGLDDSKRLTAQKREW 62 Query: 71 LYEKI-TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L +I +A + +D +H+A L+ + AV L +P L+DG +P L Sbjct: 63 LEPRIFQQAASWHVVVMPPGEVDAMGVHQANLEGMRRAVAGLAEVPDYVLLDGFEVPR-L 121 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A V+ GD + IAAAS++AKV RDR+M + +P YGF +H GY TA H + Sbjct: 122 GAPARRVVGGDRLVACIAAASVLAKVARDRIMAELDEAHPGYGFATHKGYCTAAHMAALA 181 Query: 190 EKGPSCIHRLTFRPL 204 E GP HR ++ P+ Sbjct: 182 ELGPCDQHRYSYAPV 196 >gi|183981819|ref|YP_001850110.1| ribonuclease HII protein RnhB [Mycobacterium marinum M] gi|238689245|sp|B2HJL9|RNH2_MYCMM RecName: Full=Ribonuclease HII; Short=RNase HII gi|183175145|gb|ACC40255.1| ribonuclease HII protein RnhB [Mycobacterium marinum M] Length = 239 Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 79/198 (39%), Positives = 113/198 (57%), Gaps = 4/198 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE+ ++ + PVAG+DEVGRGA AGP+VVAA L PN ++DSKK++ K RE+L Sbjct: 20 LESALQRSGLGPVAGVDEVGRGACAGPLVVAACALGPNRYESLAALDDSKKLTEKTREKL 79 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ + +D+ +H A ++ + AV L V P L DG +P L Sbjct: 80 FPLICRYALAYHVVFIPSVEVDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP-GLS 138 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+ + IAAAS++AKV+RDRLM +YP YGF H GY T H + + Sbjct: 139 VPSLPVIGGDAAAACIAAASVLAKVSRDRLMVAMDTQYPGYGFAEHKGYSTRAHTLALTQ 198 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP HR +F +R ++ Sbjct: 199 LGPCPEHRRSFINVRRVA 216 >gi|34497665|ref|NP_901880.1| ribonuclease HII [Chromobacterium violaceum ATCC 12472] gi|39932273|sp|Q7NPS3|RNH2_CHRVO RecName: Full=Ribonuclease HII; Short=RNase HII gi|34331005|gb|AAQ64053.1| ribonuclease HII [Chromobacterium violaceum ATCC 12472] Length = 198 Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 83/182 (45%), Positives = 109/182 (59%), Gaps = 1/182 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DE GRG LAG V AA+ILDP G+ DSK +S +R+EL I A+ + Sbjct: 6 RVAGVDEAGRGPLAGAVFAAAVILDPAKPIAGLADSKVLSEAQRDELAVLIKRDALAWCV 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS + IDK NI AT+ A+ AVE L V P A IDG +P+ LP A++KGD+ Sbjct: 66 ASASVEEIDKLNILHATMLAMTRAVEGLPVRPDLAQIDGNRVPKHLPVPGEAIVKGDAKV 125 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AK RD + +P YGF H GYPTA+H I+ G HR TF P Sbjct: 126 AAISAASILAKTARDAELVALDALHPQYGFARHKGYPTAEHLAAIEAHGVLPAHRKTFGP 185 Query: 204 LR 205 ++ Sbjct: 186 VK 187 >gi|332284293|ref|YP_004416204.1| ribonuclease HII [Pusillimonas sp. T7-7] gi|330428246|gb|AEC19580.1| ribonuclease HII [Pusillimonas sp. T7-7] Length = 220 Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 87/183 (47%), Positives = 114/183 (62%), Gaps = 1/183 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAGIDE GRG LAGPV AA+ILDP G++DSKK+S +RE L + A+ I+ Sbjct: 21 VAGIDEAGRGPLAGPVFAAAVILDPARPIKGLDDSKKLSPARREGLALAVREYALAWYIA 80 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SA+ + ID NI +AT+ A+ A E L + ALIDG +P+ LPC A A+I GD+ Sbjct: 81 SATVEEIDTLNILQATMLAMRRACEGLSLPLAQALIDGNRVPKGLPCAAQAIIGGDASVA 140 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AK RD + H+ YPDY FD H GY TA H ++ GP HR TF P+ Sbjct: 141 AISAASILAKTARDADCLLLHQAYPDYCFDQHKGYGTALHLARLQAYGPCPAHRRTFAPV 200 Query: 205 RNL 207 + L Sbjct: 201 KRL 203 >gi|15895039|ref|NP_348388.1| ribonuclease HII [Clostridium acetobutylicum ATCC 824] gi|39932446|sp|Q97I90|RNH2_CLOAB RecName: Full=Ribonuclease HII; Short=RNase HII gi|15024732|gb|AAK79728.1|AE007685_4 Ribonuclease HII [Clostridium acetobutylicum ATCC 824] gi|325509176|gb|ADZ20812.1| ribonuclease HII [Clostridium acetobutylicum EA 2018] Length = 254 Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 83/205 (40%), Positives = 121/205 (59%), Gaps = 12/205 (5%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN-----NIPFGINDSKKI 63 + +E + +AG+DEVGRG LAGP+V AA+IL+ N ++ GINDSKK+ Sbjct: 55 KKLYEFDKQF---GNIVIAGVDEVGRGPLAGPIVGAAVILELNVEKDLDLILGINDSKKL 111 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S KKR+EL E I A+ I+S + IDK I + A+ L+ +P + DG Sbjct: 112 SSKKRQELSEIIKEKALAWEIASLDNNEIDKKGISWCNNEIFKIAISKLKKVPELVISDG 171 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 ++ + + + ++KGD+ S SIA ASIIAKV RD LM K Y +YGF+S+VGY + Sbjct: 172 YAV-KGIGIKNHYIVKGDAQSASIACASIIAKVYRDNLMGEYAKSYSEYGFESNVGYGSK 230 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 H IK+ G + IHR++F L+N+ Sbjct: 231 DHIDAIKKFGTTPIHRMSF--LKNI 253 >gi|226366005|ref|YP_002783788.1| ribonuclease HII [Rhodococcus opacus B4] gi|254807984|sp|C1B2S6|RNH2_RHOOB RecName: Full=Ribonuclease HII; Short=RNase HII gi|226244495|dbj|BAH54843.1| ribonuclease HII [Rhodococcus opacus B4] Length = 226 Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 77/197 (39%), Positives = 113/197 (57%), Gaps = 4/197 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREEL 71 +E+ + + PVAG+DE GRGA AGP+VVAA +L P P ++DSKK++ + REEL Sbjct: 19 MESALVRSGLGPVAGVDEAGRGACAGPLVVAACVLAPKPYPALARLDDSKKLTERTREEL 78 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + IT A+ S+ S +D+ +H A ++ + AV L P L DG +P LP Sbjct: 79 FPAITRLAVAWSVVSFPADEVDRMGVHVANIEGMRRAVAGLTTTPGYVLTDGFRVP-GLP 137 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+ + IAAAS++AKV+RDR+M + +P YGF H GY T H ++ Sbjct: 138 APSLPVIGGDAAAACIAAASVLAKVSRDRVMVAMDETHPGYGFAIHKGYNTPAHLAALEV 197 Query: 191 KGPSCIHRLTFRPLRNL 207 GP HR ++ + L Sbjct: 198 LGPCPEHRRSWSNVAAL 214 >gi|254232994|ref|ZP_04926321.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium tuberculosis C] gi|124602053|gb|EAY61063.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium tuberculosis C] Length = 264 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 78/198 (39%), Positives = 113/198 (57%), Gaps = 4/198 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREEL 71 LE+ + + PVAG+DEVGRGA AGP+VVAA +L P I ++DSKK+S + RE+L Sbjct: 23 LESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDDSKKLSEQAREKL 82 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ + +D+ +H A ++ + AV L V P L DG +P LP Sbjct: 83 FSLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVP-GLP 141 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+ + IAAAS++AKV+RDR+M +P YGF H GY T H + + Sbjct: 142 MPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAHSRALAR 201 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP HR +F +R ++ Sbjct: 202 LGPCPQHRYSFINVRRVA 219 >gi|213964538|ref|ZP_03392738.1| ribonuclease HII [Corynebacterium amycolatum SK46] gi|213952731|gb|EEB64113.1| ribonuclease HII [Corynebacterium amycolatum SK46] Length = 205 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 76/195 (38%), Positives = 105/195 (53%), Gaps = 4/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREEL 71 +E + ++ + PVAG+DE GRGA AGP+V+AA L I + DSKK++ RE L Sbjct: 1 MEVALAKRGLGPVAGVDEAGRGACAGPIVIAACCLPERPIAELDKLTDSKKLTPAARERL 60 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I AI +++ YID+ I A + + AV L+ P L D + Sbjct: 61 FPLIQRFAISFCVTTIPASYIDQFGIQDANVTGMRRAVAGLEQRPGYVLTDALKV-SGFT 119 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 VI GDS IAAAS++AKVTRDR+M +KYPDYG H GY TA H + I Sbjct: 120 APYLPVIGGDSTCRCIAAASVLAKVTRDRIMVDLSEKYPDYGLAGHKGYGTASHMEAISR 179 Query: 191 KGPSCIHRLTFRPLR 205 G + HR ++R +R Sbjct: 180 HGATPEHRWSYRNVR 194 >gi|239948099|ref|ZP_04699852.1| ribonuclease HII [Rickettsia endosymbiont of Ixodes scapularis] gi|239922375|gb|EER22399.1| ribonuclease HII [Rickettsia endosymbiont of Ixodes scapularis] Length = 193 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 89/179 (49%), Positives = 114/179 (63%), Gaps = 2/179 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + VAGIDE GRG LAGPVV +A+I+D NI GI DSKK+S KKRE LYE+ITS+ + S Sbjct: 15 YIVAGIDEAGRGPLAGPVVASAVIIDNANIITGIKDSKKLSKKKRELLYEQITSNYVWSA 74 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + SH ID+ NI +AT A A NL P L+DG D + +++ GD++S Sbjct: 75 AIISHTEIDEINILEATKKACSIAAANLTTKPEIVLVDGNMQFND--ERFVSIVNGDNLS 132 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 LSIAAASIIAKVTRDRLM ++P Y + + GY T +H + I G S HR +FR Sbjct: 133 LSIAAASIIAKVTRDRLMLDLSAEFPQYLWHKNSGYGTKEHIEAINTHGLSPYHRRSFR 191 >gi|291278613|ref|YP_003495448.1| ribonuclease HII [Deferribacter desulfuricans SSM1] gi|290753315|dbj|BAI79692.1| ribonuclease HII [Deferribacter desulfuricans SSM1] Length = 187 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 77/176 (43%), Positives = 106/176 (60%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G+DEVGRG AGP+VV+A+IL P+ I DSKKIS K+RE+L + I A+ S++ Sbjct: 7 VGLDEVGRGCFAGPLVVSAVILPPDFKDERIIDSKKISEKQREKLAQYIKDIALDYSVAV 66 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ++ IDK NI +AT A++ A+ L ID + C+ V KG+S + Sbjct: 67 VCNKVIDKINILQATKQAMHIAISRLNNQYSFIAIDAVKLKNFYGCKINPVNKGESKFQN 126 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASIIAKV RD LM+ H KYP+Y + + GY T +H + IK+ G +HR TF Sbjct: 127 IAAASIIAKVYRDNLMKKLHLKYPEYNWYKNKGYGTKEHIEAIKKYGICELHRKTF 182 >gi|13476167|ref|NP_107737.1| ribonuclease HII [Mesorhizobium loti MAFF303099] gi|39932447|sp|Q986D0|RNH2_RHILO RecName: Full=Ribonuclease HII; Short=RNase HII gi|14026927|dbj|BAB53523.1| ribonuclease HII [Mesorhizobium loti MAFF303099] Length = 231 Score = 224 bits (571), Expect = 8e-57, Method: Composition-based stats. Identities = 102/202 (50%), Positives = 137/202 (67%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 I E+P F E +WPVAG+DE GRG LAGPVV AA++LDP NIP G++DSK++SH Sbjct: 14 IVEKPDFSFETKAMADGLWPVAGMDEAGRGPLAGPVVAAAVVLDPANIPEGLDDSKRLSH 73 Query: 66 KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 +RE L+ +I SA +S++S S + ID NI KA+L+A+ A+ L V P+ AL DGR Sbjct: 74 FQREALFLRILGSAQAVSMASISAEGIDGSNILKASLEAMRRALVGLSVRPKLALADGRD 133 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P LPC A+IKGD S SIAAASI+AKV RDR+M + YGF+ H+GY TA+H Sbjct: 134 VPPGLPCDGRALIKGDQRSQSIAAASIVAKVMRDRMMCGCGSHHDRYGFEVHMGYATARH 193 Query: 185 QQVIKEKGP-SCIHRLTFRPLR 205 + I+ GP + +HR++F P R Sbjct: 194 RTAIETHGPVARLHRVSFAPFR 215 >gi|313754409|pdb|3O3F|A Chain A, T. Maritima Rnase H2 D107n In Complex With Nucleic Acid Substrate And Magnesium Ions gi|313754415|pdb|3O3H|A Chain A, T. Maritima Rnase H2 D107n In Complex With Nucleic Acid Substrate And Manganese Ions Length = 222 Score = 224 bits (571), Expect = 8e-57, Method: Composition-based stats. Identities = 81/198 (40%), Positives = 108/198 (54%), Gaps = 18/198 (9%) Query: 17 MVREKNMWPVAGIDEVGRGALAGP-------VVVAAIILDPNNIPFGINDSKKISHKKRE 69 + +K VAG+DE GRG LAGP + GINDSK++S KRE Sbjct: 4 ELYKKEFGIVAGVDEAGRGCLAGPVVAAAVVL---------EKEIEGINDSKQLSPAKRE 54 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L ++I A + I AS + ID +NI AT A+ A+ENL V P L++G+ I +L Sbjct: 55 RLLDEIMEKAAVGIGIASPEEIDLYNIFNATKLAMNRALENLSVKPSFVLVNGKGI--EL 112 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++KGD S I AASI+AKV RDRLM H+ YP + F H GY T +H I+ Sbjct: 113 SVPGTCLVKGDQKSKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKHKGYATKEHLNEIR 172 Query: 190 EKGPSCIHRLTFRPLRNL 207 + G IHRL+F P+ L Sbjct: 173 KNGVLPIHRLSFEPVLEL 190 >gi|296171466|ref|ZP_06852752.1| ribonuclease HII [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894152|gb|EFG73912.1| ribonuclease HII [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 242 Score = 224 bits (571), Expect = 8e-57, Method: Composition-based stats. Identities = 76/199 (38%), Positives = 114/199 (57%), Gaps = 4/199 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE+ + + PVAG+DEVGRGA AGP+VVAA +L P + ++DSKK++ RE+L Sbjct: 20 LESALYRSGLGPVAGVDEVGRGACAGPLVVAACVLGPGRLESLAALDDSKKLTEGAREKL 79 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ + +D+ +H A ++ + AV L + P L DG +P LP Sbjct: 80 FPLIRRYALAYHVVFIPPAEVDRRGVHVANIEGMRRAVAGLSLRPGYVLSDGFRVP-GLP 138 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+++ IAAAS++AKV+RDRLM +P YGF H GY T H + + Sbjct: 139 VPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMDADHPGYGFAEHKGYSTPAHSTALTQ 198 Query: 191 KGPSCIHRLTFRPLRNLSV 209 GP HR +F +R +++ Sbjct: 199 LGPCPEHRRSFINVRRVAL 217 >gi|300858737|ref|YP_003783720.1| ribonuclease HII [Corynebacterium pseudotuberculosis FRC41] gi|300686191|gb|ADK29113.1| Ribonuclease HII [Corynebacterium pseudotuberculosis FRC41] gi|302206444|gb|ADL10786.1| Ribonuclease HII [Corynebacterium pseudotuberculosis C231] gi|302331000|gb|ADL21194.1| ribonuclease HII [Corynebacterium pseudotuberculosis 1002] Length = 240 Score = 224 bits (571), Expect = 8e-57, Method: Composition-based stats. Identities = 72/195 (36%), Positives = 104/195 (53%), Gaps = 4/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREEL 71 E + + + PVAGIDE GRG+ GP+ +AA IL I + DSKK+S + REEL Sbjct: 31 FEGTLEKWGLGPVAGIDEAGRGSCCGPITIAACILPSRPIAALATLTDSKKLSSRMREEL 90 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y I A+ SI S ID++ I A + + A+ L P LID +P L Sbjct: 91 YPLIKKYAVAWSILHISASEIDRYGIQHANISGMRRAIALLSKQPGYVLIDAMRVP-GLT 149 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 C + +I GD+ + IAAAS++AK +RD LM ++YP YG H GY T H ++ Sbjct: 150 CPSLPIIGGDTAARCIAAASVLAKQSRDELMIDLDREYPGYGLGDHKGYGTKSHIDAVRR 209 Query: 191 KGPSCIHRLTFRPLR 205 G + HR ++ ++ Sbjct: 210 HGGTPEHRYSYANVK 224 >gi|239831265|ref|ZP_04679594.1| Ribonuclease HII [Ochrobactrum intermedium LMG 3301] gi|239823532|gb|EEQ95100.1| Ribonuclease HII [Ochrobactrum intermedium LMG 3301] Length = 281 Score = 224 bits (571), Expect = 8e-57, Method: Composition-based stats. Identities = 96/204 (47%), Positives = 133/204 (65%), Gaps = 2/204 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 IP P F E + + + + GIDE GRG LAGPVV AA++LD +N+P G++DSK+++ Sbjct: 74 DIPIAPDFSEEKRLLSRGLKHIVGIDEAGRGPLAGPVVAAAVVLDIDNLPDGLDDSKRLT 133 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +RE LYE I + AI +S++S S + ID +I KA L+A+ A L + P ALIDGR Sbjct: 134 AARREALYEIILAKAITVSVASLSARSIDGSDIRKAALEAMRRASIGLTLRPCHALIDGR 193 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P L C A++KGD S+SIAAASI+AKVTRDR+M A +P YG + H GY T + Sbjct: 194 DVPPGLACPGSALVKGDQRSISIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATER 253 Query: 184 HQQVIKEKGPSC-IHRLTFRPLRN 206 H+ I+ GP IHR TF P+++ Sbjct: 254 HRAAIETAGPVPGIHRYTFAPIKD 277 >gi|325923964|ref|ZP_08185553.1| RNase HII [Xanthomonas gardneri ATCC 19865] gi|325545547|gb|EGD16812.1| RNase HII [Xanthomonas gardneri ATCC 19865] Length = 242 Score = 224 bits (571), Expect = 8e-57, Method: Composition-based stats. Identities = 80/185 (43%), Positives = 118/185 (63%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-I 81 +AG+DE GRG LAGPV VAA++ DP+ G++DSK+++ ++RE+ Y +I A+ Sbjct: 31 RLIAGVDEAGRGPLAGPVAVAAVVFDPSKPRINGLDDSKQLTAERREQAYARIVERALAW 90 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S+ + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD+ Sbjct: 91 SVVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDA 150 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + +I AASI+AKVTRDRLM H ++P+Y FD H GY T H ++ GP HR +F Sbjct: 151 LDRAIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYATPVHLAALQTHGPCPQHRRSF 210 Query: 202 RPLRN 206 P+R Sbjct: 211 APVRR 215 >gi|319786395|ref|YP_004145870.1| ribonuclease H [Pseudoxanthomonas suwonensis 11-1] gi|317464907|gb|ADV26639.1| Ribonuclease H [Pseudoxanthomonas suwonensis 11-1] Length = 233 Score = 223 bits (570), Expect = 9e-57, Method: Composition-based stats. Identities = 84/187 (44%), Positives = 114/187 (60%), Gaps = 1/187 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + VAG+DE GRG LAGPV VAA++LDP G++DSKK+SH +RE+LY +I A+ Sbjct: 26 RKQLRVAGVDEAGRGPLAGPVAVAAVVLDPRRRIRGLDDSKKLSHAQREDLYPRIVERAL 85 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 + ID+ NI +ATL+ + V L + A IDG +P LPC A A+I G Sbjct: 86 AWHVELVPVDEIDRLNILQATLEGMRRCVLALGEHAQLARIDGNMLPRSLPCMAEAIIGG 145 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D++ +I AASI+AKV+RDRLM H+++P YGF H GY T H + GP HR Sbjct: 146 DALEPAIMAASILAKVSRDRLMCQLHEEFPVYGFAEHKGYATPAHLAALASHGPCVHHRR 205 Query: 200 TFRPLRN 206 +F P+R Sbjct: 206 SFAPVRQ 212 >gi|294668304|ref|ZP_06733408.1| hypothetical protein NEIELOOT_00217 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309758|gb|EFE51001.1| hypothetical protein NEIELOOT_00217 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 196 Score = 223 bits (570), Expect = 9e-57, Method: Composition-based stats. Identities = 82/182 (45%), Positives = 108/182 (59%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL P+ G+ DSKK+S KKR+ L E+I A+ ++S Sbjct: 7 AGVDEAGRGPLVGSVFAAAVILPPDYDLAGLADSKKLSEKKRDALAEEIRRQAVGWCVAS 66 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A I + NI A + A+ AVE L V P+ IDG +PE L +A AV+KGD + Sbjct: 67 ADVAEIAELNILHAAMLAMRRAVEGLAVPPQKVWIDGNRVPEGLAVEAEAVVKGDDKIAA 126 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AK RD M ++YP YGF+ H GY TA H +K+ G HR F P+R Sbjct: 127 ISAASILAKTARDAEMYALAERYPQYGFEKHKGYGTATHLAALKQYGALPEHRAGFAPVR 186 Query: 206 NL 207 L Sbjct: 187 EL 188 >gi|289766192|ref|ZP_06525570.1| ribonuclease HII [Fusobacterium sp. D11] gi|289717747|gb|EFD81759.1| ribonuclease HII [Fusobacterium sp. D11] Length = 213 Score = 223 bits (570), Expect = 9e-57, Method: Composition-based stats. Identities = 80/194 (41%), Positives = 115/194 (59%), Gaps = 10/194 (5%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKIT 76 + + V G+DE GRG LAGPVV AA+IL + INDSKK++ KKRE+LY+ I Sbjct: 7 LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSKKLTEKKREKLYDIIM 66 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS--------ALIDGRSIPED 128 + +++ ++ + IDK NI A A+ A+++L+ I + L+DG ++ Sbjct: 67 KNFYVAVGISTVEEIDKMNILNADFLAMRRALKDLENIKKDKKDKKEYIVLVDGNLKIKE 126 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + ++KGD+ SLS+AAASIIAKVTRDR M+ YPDY F+ H GY T H + I Sbjct: 127 YSGKQLPIVKGDAKSLSVAAASIIAKVTRDRFMKDLANIYPDYSFEKHKGYGTKAHIEAI 186 Query: 189 KEKGPSC-IHRLTF 201 K+KG +HR F Sbjct: 187 KDKGAIEGVHRKVF 200 >gi|58038820|ref|YP_190784.1| ribonuclease HII [Gluconobacter oxydans 621H] gi|81352528|sp|Q5FU18|RNH2_GLUOX RecName: Full=Ribonuclease HII; Short=RNase HII gi|58001234|gb|AAW60128.1| Ribonuclease HII [Gluconobacter oxydans 621H] Length = 207 Score = 223 bits (570), Expect = 9e-57, Method: Composition-based stats. Identities = 88/204 (43%), Positives = 120/204 (58%), Gaps = 10/204 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISH 65 P + LEA + V GIDEVGRG LAGPVV +A+ + ++DSKK++ Sbjct: 1 MPDYALEAA----HGGLVVGIDEVGRGPLAGPVVASAVAFTAPPSETLSSLLDDSKKLTA 56 Query: 66 KKREELYEKIT--SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 ++R YE + A+I I +AS I++ NI +A A+ A+ L P AL+DG+ Sbjct: 57 RRRMLAYEALMADEQALIGIGAASVAEIERINIAQACYLAMRRALSRLGCTPDLALVDGK 116 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 P+ LPC VI GD ISLSIAAASIIAKVTRDRLM ++ YG++ + GY TA Sbjct: 117 HAPK-LPCPIKMVIGGDGISLSIAAASIIAKVTRDRLMVRLAVRHDAYGWERNAGYGTAA 175 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H Q +K +G + HR F P+RN+ Sbjct: 176 HMQGLKLRGVTPHHRRGFAPIRNM 199 >gi|145589618|ref|YP_001156215.1| ribonuclease H [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|189043639|sp|A4SYT7|RNH2_POLSQ RecName: Full=Ribonuclease HII; Short=RNase HII gi|145048024|gb|ABP34651.1| RNase HII [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 196 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 85/201 (42%), Positives = 110/201 (54%), Gaps = 26/201 (12%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAII----------LDPNNIPFGINDSKKISHKKREEL 71 NM V G+DE GRG L LDP N G+ DSKK+S +RE L Sbjct: 2 NMIWVCGVDEAGRGPL----------VGAVVAGAVVLDPENPIEGLKDSKKLSAVRREFL 51 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL----QVIPRSALIDGRSIP 126 YE+I A + AS ID NI +AT+ A+ AVE+L P ALIDG P Sbjct: 52 YEQIMEKAKAWGVGEASPTEIDSINILQATMLAMRRAVEDLAARLGEWPSKALIDGNRCP 111 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 E L A A++KGD+ +I+AASI+AKVTRDR M H+++P YGF H+GYPT H Sbjct: 112 E-LSIAAEAIVKGDTKEPAISAASIVAKVTRDRQMIALHEQHPQYGFSQHMGYPTEAHFA 170 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 +K+ G HR +F P+R + Sbjct: 171 ALKQYGVCTEHRKSFAPVRRV 191 >gi|330752580|emb|CBL87526.1| ribonuclease HII [uncultured Flavobacteria bacterium] Length = 191 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 101/179 (56%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG LAGPV A +IL INDSK ++ KKR L I AI ++ Sbjct: 12 AGVDEAGRGCLAGPVTAAVVILPKGITLPQINDSKILTEKKRYNLRSLIEKCAIDFQVAH 71 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 IDK NI +T+ A++ A++ L+ P+ ++DG ++KGD + Sbjct: 72 VFQDEIDKINILNSTIKAMHLAIKKLKETPQYIIVDGNKFYPYKDVPYKCIVKGDGKYQN 131 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD MR ++P+YG++ + GYPT H++ I++ G + HR +F+ L Sbjct: 132 IAAASILAKTYRDDYMRKIEYEFPEYGWNKNKGYPTVTHRKAIEKFGITEHHRNSFKLL 190 >gi|325680872|ref|ZP_08160410.1| ribonuclease HII [Ruminococcus albus 8] gi|324107652|gb|EGC01930.1| ribonuclease HII [Ruminococcus albus 8] Length = 204 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 115/184 (62%), Gaps = 2/184 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 V G DE GRG LAG V AA++ D + + GINDSKK++ KKREEL+E I Sbjct: 10 YRDKYDVVCGCDEAGRGPLAGDVFAAAVVFDKDTVIEGINDSKKLTAKKREELFEVIVEK 69 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A+ SI A+ + I+K NI + A+ AVE++++ P LIDG PE L C A AV+ Sbjct: 70 ALDFSIQCATVEEIEKFNILNCAMLAMKRAVESMKIKPDVCLIDGNKTPE-LECDAIAVV 128 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD+ S +IAAASI+AKV RDR M KK+P++ F+ H GY T H Q+I + G S IH Sbjct: 129 KGDAQSQAIAAASILAKVARDRYMLEMAKKFPEWQFEKHKGYGTKLHYQMIDKYGESPIH 188 Query: 198 RLTF 201 R +F Sbjct: 189 RPSF 192 >gi|150021773|ref|YP_001307127.1| ribonuclease HII [Thermosipho melanesiensis BI429] gi|189043672|sp|A6LP91|RNH2_THEM4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|149794294|gb|ABR31742.1| Ribonuclease H [Thermosipho melanesiensis BI429] Length = 216 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 76/186 (40%), Positives = 115/186 (61%), Gaps = 6/186 (3%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 VAG+DE GRG L GPVV +A++L +GI DSKK++ K+REEL+ +I ++ I Sbjct: 1 MIVAGVDEAGRGPLFGPVVASAVVLKKE--IYGITDSKKLTLKQREELFMEIIRNSYFGI 58 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 AS IDK NI AT A+ A+ L ++ L+DG+++ D ++ ++KGD Sbjct: 59 GFASSSEIDKLNILHATELAMNRALAMLERKIRFDMVLVDGKNLKLDY--KSKCIVKGDV 116 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + I+AASIIAKV RD++M KK+ +Y + H GYPT H ++I++ G + HRLTF Sbjct: 117 LIKEISAASIIAKVVRDKIMTFYSKKFSNYALEKHKGYPTKDHIKLIEKYGLTPEHRLTF 176 Query: 202 RPLRNL 207 +P+ + Sbjct: 177 KPITKM 182 >gi|325266705|ref|ZP_08133381.1| ribonuclease HII [Kingella denitrificans ATCC 33394] gi|324981814|gb|EGC17450.1| ribonuclease HII [Kingella denitrificans ATCC 33394] Length = 202 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 104/180 (57%), Gaps = 1/180 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL + G+ DSKK+S KKR+EL +I + A I+ Sbjct: 13 AGVDEAGRGCLVGSVFAAAVILPAHFDLRGLTDSKKLSEKKRDELAVQIKAQAAAYCIAR 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A I + NI AT+ A+ AV+ L+ P IDG +P DL A V+KGD+ + Sbjct: 73 ADVGEIAQLNILHATMLAMKRAVQGLEKQPAKVWIDGNRMPPDLGVPAECVVKGDAKIAA 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AKV RD M H++YP YGF H GY TA H + + G HR F P++ Sbjct: 133 ISAASVLAKVARDAEMYALHERYPQYGFAQHKGYGTAAHLAALAQFGALPEHRADFAPVK 192 >gi|51246658|ref|YP_066542.1| ribonuclease HII [Desulfotalea psychrophila LSv54] gi|81641223|sp|Q6AJE5|RNH2_DESPS RecName: Full=Ribonuclease HII; Short=RNase HII gi|50877695|emb|CAG37535.1| probable ribonuclease HII [Desulfotalea psychrophila LSv54] Length = 225 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 91/201 (45%), Positives = 127/201 (63%), Gaps = 7/201 (3%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 +F LE + +AG DEVGRG LAGPV+ AA+IL + DSK +SHKKR Sbjct: 15 NFFLERSLHNLGYDIIAGTDEVGRGPLAGPVIAAAVILPADCDHHLFQDSKILSHKKRVH 74 Query: 71 LYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGR-SI 125 L++ +T A I I + S + ID+ NI +A+L A+ A+E+L P L+DG+ + Sbjct: 75 LFQLLTEIDAFIGIGTVSEKIIDEINILQASLLAMKLAIEDLASNCSRPSFLLVDGKFKV 134 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P DL A+IKG+S S SIAAASI+AKVTRDR M+ H +YP YGF+++ GYPT KH+ Sbjct: 135 PIDLA--QVALIKGESKSASIAAASIVAKVTRDRYMQDLHSQYPQYGFNTNSGYPTKKHR 192 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 + I E G +C HR +F+ ++ Sbjct: 193 EAIGEFGITCYHRRSFKGVKE 213 >gi|171463285|ref|YP_001797398.1| Ribonuclease H [Polynucleobacter necessarius subsp. necessarius STIR1] gi|238689054|sp|B1XTV7|RNH2_POLNS RecName: Full=Ribonuclease HII; Short=RNase HII gi|171192823|gb|ACB43784.1| Ribonuclease H [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 197 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 84/197 (42%), Positives = 110/197 (55%), Gaps = 26/197 (13%) Query: 25 PVAGIDEVGRGALAGPVVVAAII----------LDPNNIPFGINDSKKISHKKREELYEK 74 V G+DE GRG L LDPNN G+ DSKK++ +RE LYE+ Sbjct: 5 WVCGVDEAGRGPL----------VGAVVAGAVVLDPNNPIEGLKDSKKLTAARREYLYEQ 54 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL----QVIPRSALIDGRSIPEDL 129 I A + AS ID+ NI +AT+ A+ A+E+L P ALIDG PE L Sbjct: 55 IMEKAKAWGVGEASPTEIDEINILQATMLAMRRAIEDLATRLGAWPDKALIDGNRCPE-L 113 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P A A+IKGD+ +I+AASI+AKVTRDR M H+++P+YGF H+GYPT H +K Sbjct: 114 PIAAEAIIKGDTKEPAISAASIVAKVTRDRQMMSLHERHPEYGFAQHMGYPTEAHFAALK 173 Query: 190 EKGPSCIHRLTFRPLRN 206 + G HR F P+R Sbjct: 174 QYGACDQHRRCFSPVRK 190 >gi|77919812|ref|YP_357627.1| ribonuclease HII [Pelobacter carbinolicus DSM 2380] gi|97189130|sp|Q3A2F0|RNH2_PELCD RecName: Full=Ribonuclease HII; Short=RNase HII gi|77545895|gb|ABA89457.1| RNase HII [Pelobacter carbinolicus DSM 2380] Length = 209 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 81/203 (39%), Positives = 108/203 (53%), Gaps = 20/203 (9%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN---------NIPFGINDSKKIS 64 E + + +AGIDE GRG LAG G+NDSKKIS Sbjct: 15 FEQRLSRQGYRRIAGIDEAGRGPLAG---------PVVAAAVVLPPVFDLPGLNDSKKIS 65 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 K RE+L+ +I A+ I AS Q +D N+ +ATL A+ A++ L L+DG Sbjct: 66 AKLREKLFPQIRRQALDYGIGLASAQEVDGLNVLQATLLAMRRALDRLAQPADYLLVDGI 125 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + P LP + +GDS SLSIAAAS++AKV RDRLM ++P+YGF H GY +A Sbjct: 126 T-PVPLPLPQKTLKQGDSRSLSIAAASVLAKVVRDRLMTTYDARFPEYGFAGHKGYGSAA 184 Query: 184 HQQVIKEKGPSCIHRLTFRPLRN 206 H+ I GP +HR TFR +R Sbjct: 185 HRAAIARLGPCPLHRATFRGVRE 207 >gi|38234094|ref|NP_939861.1| ribonuclease HII [Corynebacterium diphtheriae NCTC 13129] gi|73917606|sp|Q6NGJ8|RNH2_CORDI RecName: Full=Ribonuclease HII; Short=RNase HII gi|38200356|emb|CAE50042.1| ribonuclease HII [Corynebacterium diphtheriae] Length = 229 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 71/195 (36%), Positives = 103/195 (52%), Gaps = 4/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREEL 71 E + + + PVAG+DE GRG+ GP+ +AA I+ I + DSKK+S KR EL Sbjct: 24 FEVTLDKHGLGPVAGVDEAGRGSCCGPITIAACIMPQRPIAQLQALTDSKKLSAAKRAEL 83 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y I A+ SI S ID+ I A + + A+E L V P L D +P L Sbjct: 84 YPLIKKYALAWSIIHISAAEIDREGIQHANIFGMRRAIEKLDVAPGYVLTDAMKVP-GLR 142 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 C + +I GD+ IAAAS++AK +RD +M KYP+YG + H GY T H ++ Sbjct: 143 CPSLPIIGGDAAVRCIAAASVLAKHSRDLIMDDLGGKYPEYGLEDHKGYGTKSHMDAVRH 202 Query: 191 KGPSCIHRLTFRPLR 205 G + HR ++ ++ Sbjct: 203 HGATPEHRYSYSNVK 217 >gi|313896353|ref|ZP_07829906.1| ribonuclease HII [Selenomonas sp. oral taxon 137 str. F0430] gi|312975152|gb|EFR40614.1| ribonuclease HII [Selenomonas sp. oral taxon 137 str. F0430] Length = 258 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 93/212 (43%), Positives = 118/212 (55%), Gaps = 18/212 (8%) Query: 13 ELEAMVREK----------------NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG 56 E M RE+ VAG+DE GRG LAGPV VAA IL Sbjct: 43 RYERMYRERKRLAAMYAYERAAAARGHILVAGVDEAGRGPLAGPVAVAAAILPKELYLPR 102 Query: 57 INDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP 115 +NDSKK+S K R EL+E+IT AI ++ ID+ NI +AT +Y AV L P Sbjct: 103 LNDSKKLSAKVRAELFEEITEKAIAYHVTLIDAAEIDRINILQATRCGMYEAVAALTPAP 162 Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 L+D +P+ L ++IKGD+ S SIAAASI+AKVTRDRLM +YP YGF Sbjct: 163 EEVLVDAVELPQ-LRMPVQSIIKGDAKSASIAAASILAKVTRDRLMERYDTEYPGYGFAG 221 Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 H GY TA+H I+ G + IHR TF P+R++ Sbjct: 222 HKGYGTAEHIAAIRALGVTPIHRRTFEPIRSM 253 >gi|290968507|ref|ZP_06560046.1| ribonuclease HII [Megasphaera genomosp. type_1 str. 28L] gi|290781503|gb|EFD94092.1| ribonuclease HII [Megasphaera genomosp. type_1 str. 28L] Length = 264 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 93/197 (47%), Positives = 126/197 (63%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +E E M + ++ +AGIDE GRG +AGPV++AA+IL P G+NDSKKI+ KRE L Sbjct: 62 YEPENMFYRQGIYEIAGIDEAGRGPVAGPVMIAAVILPPFWECAGLNDSKKIAPSKREAL 121 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YEKI A+ +S + ID +I+ AT +Y AV+ L V P++ L+D + E L Sbjct: 122 YEKIMQEAVAVSCIAKERAEIDVADIYHATRQGMYEAVQALAVPPKAVLVDAMPLSE-LT 180 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++I GD+IS SIAAASIIAKVTRDR+MR K YP YGF H GY T H I++ Sbjct: 181 VPHRSLIHGDAISASIAAASIIAKVTRDRVMREYDKVYPQYGFAVHKGYLTQAHADAIRK 240 Query: 191 KGPSCIHRLTFRPLRNL 207 GP IHR +F P++++ Sbjct: 241 FGPCPIHRHSFEPIKSI 257 >gi|167630260|ref|YP_001680759.1| ribonuclease hii [Heliobacterium modesticaldum Ice1] gi|167593000|gb|ABZ84748.1| ribonuclease hii [Heliobacterium modesticaldum Ice1] Length = 205 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 80/195 (41%), Positives = 112/195 (57%), Gaps = 1/195 (0%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E+++R K +AG+DE GRG+LAGPVV AA+IL + G+NDSKK+S +RE L Sbjct: 7 ERESLLRRKGFHVIAGVDEAGRGSLAGPVVAAAVILPLGCMMEGLNDSKKLSPARREALA 66 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ I S Q ID+ I +T A+ A++ L P ++DG Sbjct: 67 VEIKRLALAWGIGIVSSQVIDRIGIVPSTFRAMSLAIDRLGDRPDYLIVDGNQKVPGYEG 126 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A+I GD+++ +AAASI+AKV RD LM+ +P YGF+ H GY T H+ I E+ Sbjct: 127 TQEALIDGDALAAPVAAASILAKVVRDGLMKRYSLFFPGYGFEQHKGYGTQAHRSAILEQ 186 Query: 192 GPSCIHRLTFRPLRN 206 G +HR TF LR Sbjct: 187 GTCLLHRETFVHLRR 201 >gi|83589825|ref|YP_429834.1| ribonuclease H [Moorella thermoacetica ATCC 39073] gi|97182952|sp|Q2RJU8|RNH2_MOOTA RecName: Full=Ribonuclease HII; Short=RNase HII gi|83572739|gb|ABC19291.1| RNase HII [Moorella thermoacetica ATCC 39073] Length = 206 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 74/192 (38%), Positives = 108/192 (56%), Gaps = 2/192 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E ++ + + +AG+DE GRG LAGPV AA+IL P G+NDSKK+ +R EL Sbjct: 15 YAWERRLQRQGVARIAGVDEAGRGPLAGPVTAAAVILPPGLFIAGLNDSKKVPPARRREL 74 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 I ++ I S + ID NI A+ A+ A+ L + P LIDG +P L Sbjct: 75 AAVIKKESLAWGIGWVSVKEIDCLNILAASRWAMRRALSALAIRPDHVLIDGMELP-GLK 133 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++ GD++S SIAAASI+AKV RD LM + YG + GYPT +H++ ++ Sbjct: 134 IPQTPLVGGDALSASIAAASILAKVARDELMVAYDAVFQGYGLAGNKGYPTREHREALRR 193 Query: 191 KGPSCIHRLTFR 202 GP +HR +F+ Sbjct: 194 LGPCALHRRSFK 205 >gi|296268970|ref|YP_003651602.1| ribonuclease H [Thermobispora bispora DSM 43833] gi|296091757|gb|ADG87709.1| Ribonuclease H [Thermobispora bispora DSM 43833] Length = 241 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 79/198 (39%), Positives = 118/198 (59%), Gaps = 4/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + K PVAG+DE GRGA AGP+VVA++IL G+ DSK + RE L Sbjct: 19 YGYERALARKGFAPVAGVDEAGRGACAGPLVVASVIL--GRRIAGLADSKLLGEPVRERL 76 Query: 72 YEKITSSAIISISS-ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++++ ++A ID+H +HK + + AV L + P L+DG +P LP Sbjct: 77 HDRVVAAAQAVSVVVIPPGEIDEHGLHKCNVAGVRRAVAGLGLEPGYILVDGFPVP-GLP 135 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + A+ KGD ++ +AAASI+AKVTRDRLMR H++YP+YGFD++ GY TA H++ + Sbjct: 136 APSLAMWKGDRVAACVAAASIVAKVTRDRLMRRLHERYPEYGFDTNKGYVTAAHRRALAR 195 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP HR +F + ++ Sbjct: 196 YGPCPEHRFSFVTVARVT 213 >gi|120403186|ref|YP_953015.1| ribonuclease HII [Mycobacterium vanbaalenii PYR-1] gi|166226631|sp|A1T759|RNH2_MYCVP RecName: Full=Ribonuclease HII; Short=RNase HII gi|119956004|gb|ABM13009.1| RNase HII [Mycobacterium vanbaalenii PYR-1] Length = 249 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 79/197 (40%), Positives = 114/197 (57%), Gaps = 4/197 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE+ + + PVAG+DEVGRGA AGP+VVAA +L PN + ++DSKK++ +RE L Sbjct: 20 LESALYRAGLGPVAGVDEVGRGACAGPLVVAACVLGPNRLESLAALDDSKKLNENERERL 79 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ + Q +D+ +H A ++ + AV L + P L DG +P LP Sbjct: 80 FPLIRRYALAYHVVFIPSQEVDRRGVHVANIEGMRRAVAGLSLRPGYVLSDGFRVP-GLP 138 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + V+ GD+ + IAAAS++AKV+RDRLM ++P YGF H GY T H + Sbjct: 139 MPSLPVVGGDAAAACIAAASVLAKVSRDRLMVAMEDEHPGYGFAEHKGYSTRAHSAALAR 198 Query: 191 KGPSCIHRLTFRPLRNL 207 GPS HR +F +R L Sbjct: 199 LGPSSQHRYSFINVRRL 215 >gi|67459453|ref|YP_247077.1| ribonuclease HII [Rickettsia felis URRWXCal2] gi|73917830|sp|Q4UKL5|RNH2_RICFE RecName: Full=Ribonuclease HII; Short=RNase HII gi|67004986|gb|AAY61912.1| Ribonuclease HII [Rickettsia felis URRWXCal2] Length = 193 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 88/191 (46%), Positives = 117/191 (61%), Gaps = 5/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + VAGIDE GRG LAGPVV +A+I+D NI GI DSKK+S KKRE L Sbjct: 6 LHFEKKYHN---YIVAGIDEAGRGPLAGPVVASAVIIDNTNIIPGIKDSKKLSKKKRELL 62 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 YE+ITS+ + + + SH ID+ NI +AT A A NL + P L+DG +D Sbjct: 63 YEQITSNYVWAAAIISHIEIDEINILEATKKACSIAAANLSLKPEIVLVDGNMPFKD--K 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++I GD++SLSIAAASI+AKVTRDRLM ++P Y + + GY T +H + I Sbjct: 121 RFVSMINGDNLSLSIAAASIVAKVTRDRLMLDLSTEFPQYLWHKNSGYGTKEHIEAINMH 180 Query: 192 GPSCIHRLTFR 202 G S HR +F+ Sbjct: 181 GLSPYHRRSFK 191 >gi|283768287|ref|ZP_06341199.1| ribonuclease HII [Bulleidia extructa W1219] gi|283104679|gb|EFC06051.1| ribonuclease HII [Bulleidia extructa W1219] Length = 200 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 73/196 (37%), Positives = 109/196 (55%), Gaps = 6/196 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + V GIDE GRG LAG + VA +I I DSK IS KKRE L+ Sbjct: 7 EYEKKAWFSSKRLV-GIDEAGRGPLAGSLFVAGVIFPIGYENEEIYDSKAISEKKREHLF 65 Query: 73 EKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I AI I + ID+ NI++AT +A+ + + L D P +L Sbjct: 66 KQIQQDAIWFQIIEVPVEVIDEKNIYQATKEAMLEIAQ--KAPCEVVLTDAM--PLNLDK 121 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++KGD S+SIAAASI+AKV+RD +M +++P YG + GYPT +H++ +K Sbjct: 122 EVHDLVKGDQKSISIAAASILAKVSRDHVMVELDRQFPGYGLAKNKGYPTKEHREALKAL 181 Query: 192 GPSCIHRLTFRPLRNL 207 G + IHR ++ P++ + Sbjct: 182 GITKIHRRSYGPVKKI 197 >gi|295098996|emb|CBK88085.1| RNase HII [Eubacterium cylindroides T2-87] Length = 202 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 78/183 (42%), Positives = 106/183 (57%), Gaps = 4/183 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-IS 84 V GIDE GRG +AGP+VVA + + I+DSKK++ KKRE L+ IT+ A+ I Sbjct: 17 VLGIDEAGRGPIAGPLVVAGVCFEKGFTNEMIDDSKKLTEKKREALFSLITNEALWYQIL 76 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + IDK NI++ T +A+ N V L D +P L + +VIKGD SL Sbjct: 77 VIEEKIIDKKNIYRTTQEAMLEIAHNAPV--DIVLSDAMPLP-SLDKEWESVIKGDQKSL 133 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASI+AKVTRDR M+ + YP YGF H GYPT H + + G HR ++ P+ Sbjct: 134 SIAAASILAKVTRDRYMKKLDELYPMYGFSKHKGYPTKAHIEALNIYGVLDCHRRSYGPV 193 Query: 205 RNL 207 + + Sbjct: 194 QKM 196 >gi|239908101|ref|YP_002954842.1| ribonuclease HII [Desulfovibrio magneticus RS-1] gi|239797967|dbj|BAH76956.1| ribonuclease HII [Desulfovibrio magneticus RS-1] Length = 210 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 77/189 (40%), Positives = 108/189 (57%), Gaps = 8/189 (4%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DE GRG LAGPV A+IL G+ DSKK++ KRE L I + A+ + Sbjct: 8 RLVAGVDEAGRGCLAGPVAAGAVILPEIYELPGLTDSKKLTPAKREALAPAIKAQALAWA 67 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-PEDL------PCQAFA 135 ++ ID+ NI +AT A+ A+ +L++ P A IDG I PE + Sbjct: 68 VAFVWPGEIDRINILQATFAAMAKALAHLRLFPGLACIDGNKIIPEAYLGLLAGRLRQEC 127 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 VI GD+ +I+AASI+AK RDRL+ + +++P YGF +H GY A H ++ GP Sbjct: 128 VIGGDASVPAISAASILAKTARDRLLDLYDRRHPGYGFAAHKGYGVAVHLDALRRLGPCS 187 Query: 196 IHRLTFRPL 204 IHRLTFR + Sbjct: 188 IHRLTFRGV 196 >gi|41409068|ref|NP_961904.1| ribonuclease HII [Mycobacterium avium subsp. paratuberculosis K-10] gi|81413495|sp|Q73VP3|RNH2_MYCPA RecName: Full=Ribonuclease HII; Short=RNase HII gi|41397427|gb|AAS05287.1| RnhB [Mycobacterium avium subsp. paratuberculosis K-10] Length = 239 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 75/198 (37%), Positives = 111/198 (56%), Gaps = 4/198 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE+ + + PVAG+DEVGRGA AGP+VVAA +L P + ++DSKK++ RE L Sbjct: 20 LESALYRSGLGPVAGVDEVGRGACAGPLVVAACVLGPGKLESLAALDDSKKLTESVRERL 79 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ + +D+ +H A ++ + AV L + P L DG +P L Sbjct: 80 FPVIRRYALAYHVVFIPPAEVDRRGVHVANIEGMRRAVAGLSLRPGYVLSDGFRVP-GLA 138 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+++ IAAAS++AKV+RDRLM ++P YGF H GY T H + Sbjct: 139 VPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMDAEHPGYGFADHKGYSTPAHSAALAR 198 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP HR +F +R ++ Sbjct: 199 LGPCPQHRHSFINVRRVA 216 >gi|307546380|ref|YP_003898859.1| ribonuclease HII [Halomonas elongata DSM 2581] gi|307218404|emb|CBV43674.1| ribonuclease HII [Halomonas elongata DSM 2581] Length = 203 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 85/195 (43%), Positives = 116/195 (59%), Gaps = 2/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 EL +V E +AG+DEVGRG L GPVV AA+ILDP + G+ DSKK+S K+RE L Sbjct: 5 ELPPLVIEYQGERLAGVDEVGRGPLVGPVVAAAVILDPRDPIDGLTDSKKLSAKRRESLD 64 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ S++ AS ID NI+ AT A+ A++ L L+DG +P Sbjct: 65 AEIRERALAWSVAEASADEIDALNIYHATHLAMRRAIDALNPAAEYLLVDGNRLP-GHHV 123 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 AV+KGD+ +IAAASI+AKV RD M+ ++PDYGF H GYPT +H ++ Sbjct: 124 PGQAVVKGDARHAAIAAASILAKVARDAGMQTLDTRHPDYGFARHKGYPTREHLAALERL 183 Query: 192 GPSCIHRLTFRPLRN 206 GP HR +F P++ Sbjct: 184 GPLPEHRRSFGPVKR 198 >gi|189502530|ref|YP_001958247.1| hypothetical protein Aasi_1185 [Candidatus Amoebophilus asiaticus 5a2] gi|189497971|gb|ACE06518.1| hypothetical protein Aasi_1185 [Candidatus Amoebophilus asiaticus 5a2] Length = 194 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 107/179 (59%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DEVGRG LAGPVV AA+IL N +NDSKK+S KR L I AI +I Sbjct: 13 AGCDEVGRGCLAGPVVAAAVILPKNYYHPLLNDSKKLSTAKRILLDSIIKEVAIAWAIGE 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A+H+ ID+ NI A+ A++ A+ L +P+ LIDG+ +I GD+ + Sbjct: 73 ATHEEIDQINIFNASCLAMHRAISQLGQLPQLLLIDGKYFNPYPNIPHQCIIDGDAQFNA 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M +YPDYG++ +VGYPT H++ I+E G + HR +++ L Sbjct: 133 IAAASILAKTYRDAYMHQLSIQYPDYGWEKNVGYPTVTHRKAIQELGLTPYHRKSYKLL 191 >gi|193211692|ref|YP_001997645.1| ribonuclease HII [Chlorobaculum parvum NCIB 8327] gi|238692672|sp|B3QQY0|RNH2_CHLP8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|193085169|gb|ACF10445.1| Ribonuclease H [Chlorobaculum parvum NCIB 8327] Length = 205 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 88/201 (43%), Positives = 116/201 (57%), Gaps = 7/201 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKKR 68 E E + E N+ V GIDE GRG LAGPVV AA+ + P G ++DSKK++ + R Sbjct: 5 EFETPLWE-NLSRVCGIDEAGRGPLAGPVVAAAVAFPRHFKPTGILEKLDDSKKLTAELR 63 Query: 69 EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 EEL I SA +++ + ID+ NI +AT+ A+ AVE+L P L+DG Sbjct: 64 EELAPAIRESAEAWAVAVVDAEIIDRINILQATMLAMNQAVESLAATPELLLVDGNRFRP 123 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP ++KGDS SIAAAS++AK RD LM +YP YGFD H GYPTA+H + Sbjct: 124 VLPIPYQTIVKGDSKVFSIAAASVLAKTRRDELMVAYAAEYPAYGFDLHFGYPTARHVEA 183 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 I G IHR +F+ LR L Sbjct: 184 IARHGRCAIHRKSFK-LRKLG 203 >gi|319790514|ref|YP_004152147.1| Ribonuclease H [Thermovibrio ammonificans HB-1] gi|317115016|gb|ADU97506.1| Ribonuclease H [Thermovibrio ammonificans HB-1] Length = 242 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 79/200 (39%), Positives = 115/200 (57%), Gaps = 2/200 (1%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++ +E + K VAG+DE GRG LAGPVV AA++ P+ PF DSKK++ Sbjct: 1 MDDQEIISIEKSLWSKGYRFVAGVDEAGRGPLAGPVVAAAVVFSPHVKPFLFRDSKKLTK 60 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 ++RE L+ +I SA + + A ID+ NI++ATL A A+E L + P + D Sbjct: 61 RERERLFREILKSAYAVGVGFADSTEIDELNIYRATLLAAERAIEELPLKPDYLITDYLK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IP+ + A+ KGD S S A AS++AKV RD +M H +P+YGF+ H GYPT H Sbjct: 121 IPK-FAGRLIAIPKGDERSFSCACASVVAKVVRDFIMEELHTLFPNYGFNKHKGYPTKTH 179 Query: 185 QQVIKEKGPSCIHRLTFRPL 204 ++ G S +HR +F L Sbjct: 180 YGAVRSFGLSPVHRRSFGKL 199 >gi|203287517|ref|YP_002222532.1| ribonuclease H [Borrelia recurrentis A1] gi|238690580|sp|B5RQM7|RNH2_BORRA RecName: Full=Ribonuclease HII; Short=RNase HII gi|201084737|gb|ACH94311.1| ribonuclease H [Borrelia recurrentis A1] Length = 181 Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 80/181 (44%), Positives = 111/181 (61%), Gaps = 3/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDEVGRG + GPV+ AA+I PN + ++DSKK++ KRE L I +A + Sbjct: 2 ICGIDEVGRGCIFGPVLSAAVIFKTKPNFLNE-LDDSKKLTKTKREYLSSLILENAYYAF 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S++ IDK NIH A+L A+ A + L + L+DG+ IP+ Q A+IKGDS+ Sbjct: 61 ADISNEIIDKINIHNASLLAMQIAYQKLNIECNLVLVDGKFIPKIQAKQIRAIIKGDSMI 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I AASIIAKV RD+LM K YP YG + GYPT +H+ IK+ G +HR +FR Sbjct: 121 DEIKAASIIAKVQRDKLMVEYDKIYPLYGLKKNKGYPTKEHKDAIKKHGILSLHRKSFRL 180 Query: 204 L 204 + Sbjct: 181 I 181 >gi|323341686|ref|ZP_08081919.1| ribonuclease HII [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464111|gb|EFY09304.1| ribonuclease HII [Erysipelothrix rhusiopathiae ATCC 19414] Length = 204 Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 75/191 (39%), Positives = 111/191 (58%), Gaps = 5/191 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E E+ V GIDE GRG +AGP VV+ +I INDSK++S K+R+EL Sbjct: 7 EFEVNYWEQG-KLVVGIDEAGRGPMAGPCVVSGVIFPKGYYDARINDSKQLSEKQRDELV 65 Query: 73 EKITSSAIISISSASH-QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I S+A+ + + ID+ NI++AT +A+ ++ L D + +D+ Sbjct: 66 SNIESNALWTFTEIIPVDIIDRDNIYRATQNAMKKI--AIESKADIVLTDAMPL-DDIAI 122 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A++KGD+ SLSIAAASI+AK RD LM++ ++P+YGF H GY T +H++ I + Sbjct: 123 PVEAIVKGDARSLSIAAASILAKTVRDGLMKVYDLEFPEYGFAKHKGYGTKQHKEAILKF 182 Query: 192 GPSCIHRLTFR 202 G IHR +FR Sbjct: 183 GRCPIHRKSFR 193 >gi|260772236|ref|ZP_05881152.1| ribonuclease HII [Vibrio metschnikovii CIP 69.14] gi|260611375|gb|EEX36578.1| ribonuclease HII [Vibrio metschnikovii CIP 69.14] Length = 170 Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 73/167 (43%), Positives = 98/167 (58%), Gaps = 2/167 (1%) Query: 41 VVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKA 99 +V AA+ILDP G+NDSKK+S KKR L +I + A+ S+ S ID+ NI +A Sbjct: 1 MVTAAVILDPAQPINGLNDSKKLSEKKRLALLPEIQAKALAWSVGRCSPSEIDQLNIFQA 60 Query: 100 TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR 159 T+ A+ AV L + P L+DG +P+ LP A AV+KGD I+AASIIAKV RD+ Sbjct: 61 TMLAMQRAVAGLAIQPDLVLVDGNKVPK-LPMAAEAVVKGDLRVAQISAASIIAKVVRDQ 119 Query: 160 LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 M YP +GF H GYPT H I++ G HR +F P++ Sbjct: 120 EMAELDLLYPQFGFAQHKGYPTKAHFAAIEQHGVIDQHRRSFSPVKR 166 >gi|223998909|ref|XP_002289127.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220974335|gb|EED92664.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 183 Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 89/185 (48%), Positives = 117/185 (63%), Gaps = 7/185 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK-REELYEKITSSA--IIS 82 V G+DE GRG LAGPVV AA I+ N G+ DSKKI+ ++ RE LYE++ SS + Sbjct: 1 VVGVDEAGRGPLAGPVVAAAAIVPTN--IEGVIDSKKITKEEDRERLYEELVSSPGIRYA 58 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS--ALIDGRSIPEDLPCQAFAVIKGD 140 ++ S Q ID+ NI +ATL+ + AV+ + + ALIDG IP+D+PC + ++ KGD Sbjct: 59 VAIVSAQRIDEINILQATLEGMRMAVQGVMDMDSYYFALIDGNKIPKDMPCSSESITKGD 118 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 SI AASIIAKVTRDRLM KYP+Y H GYPT H +++ G S IHR T Sbjct: 119 GREYSIGAASIIAKVTRDRLMHEYDAKYPEYNLKQHKGYPTVAHMSAVRKHGASLIHRRT 178 Query: 201 FRPLR 205 F PL+ Sbjct: 179 FAPLK 183 >gi|157363760|ref|YP_001470527.1| ribonuclease HII [Thermotoga lettingae TMO] gi|189043671|sp|A8F5M9|RNH2_THELT RecName: Full=Ribonuclease HII; Short=RNase HII gi|157314364|gb|ABV33463.1| Ribonuclease H [Thermotoga lettingae TMO] Length = 224 Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 87/193 (45%), Positives = 121/193 (62%), Gaps = 6/193 (3%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77 ++N V G+DE GRG LAGPVV AA+IL+ + + DSK+++ +KREEL+ +I + Sbjct: 11 FYKQNFGTVIGVDEAGRGCLAGPVVAAAVILE---VQLDVFDSKQLTAQKREELFLQIMN 67 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 SA + I A+ + ID +NI AT A+ A+ +L L+DG+S+ +L Q ++ Sbjct: 68 SAEVGIGIATPEEIDLYNIFNATKIAMNRALASLNKKDAYVLVDGKSL--NLSQQGVCIV 125 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD S SIAAASI+AKV RDR+M + YP YGF H GY T H I+E GP+ H Sbjct: 126 KGDEKSASIAAASIVAKVLRDRIMVAHDRIYPCYGFSKHKGYGTVHHLNAIREFGPTVFH 185 Query: 198 RLTFRPL-RNLSV 209 RL+F P+ NLSV Sbjct: 186 RLSFSPVLSNLSV 198 >gi|309775665|ref|ZP_07670664.1| ribonuclease HII [Erysipelotrichaceae bacterium 3_1_53] gi|308916571|gb|EFP62312.1| ribonuclease HII [Erysipelotrichaceae bacterium 3_1_53] Length = 207 Score = 221 bits (564), Expect = 4e-56, Method: Composition-based stats. Identities = 73/197 (37%), Positives = 107/197 (54%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E ++ + GIDE GRG +AGP+VVAA+ P I DSKK+S KKR L+ Sbjct: 6 EYEQAWWQQGKTCIVGIDEAGRGPIAGPLVVAAVAFPPGYFHEEIYDSKKLSDKKRRALF 65 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + A I+ ID+ NI++AT +A+ E + L D +P + Sbjct: 66 QDVIHQAKEYHIAIIEPAIIDELNIYRATQNAMQTLSEQFSM-ADGVLTDAMPLPGNTK- 123 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +++KGD S+SIAAASI+AKVTRD +M K+YP YGF H GYPT H + + Sbjct: 124 DVISLVKGDQKSVSIAAASILAKVTRDCIMEAYDKQYPQYGFARHKGYPTKAHIEALHTY 183 Query: 192 GPSC-IHRLTFRPLRNL 207 G ++R ++ P+ + Sbjct: 184 GVVKGLYRESYGPVAAM 200 >gi|84502790|ref|ZP_01000903.1| ribonuclease HII [Oceanicola batsensis HTCC2597] gi|84388773|gb|EAQ01643.1| ribonuclease HII [Oceanicola batsensis HTCC2597] Length = 188 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 84/179 (46%), Positives = 117/179 (65%) Query: 29 IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASH 88 +DEVGRG LAGPV AA+ILD IP G+NDSKK++ +R L E++ + A+IS++ AS Sbjct: 1 MDEVGRGPLAGPVTAAAVILDATCIPVGLNDSKKLTEPRRLALLEELRTCAMISVAHASV 60 Query: 89 QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAA 148 + ID NI +A+ A+ AV L V P LIDG IP L A AVI GD+ LSIAA Sbjct: 61 EEIDDLNILRASHLAMERAVAGLPVRPAHLLIDGNMIPRGLDIPATAVIGGDARCLSIAA 120 Query: 149 ASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 ASI AK+ RD +MR +++ YG+D++VGYP+ H ++ G + HR +F+P+ N+ Sbjct: 121 ASIAAKIARDTIMRDLAQQFAGYGWDTNVGYPSKSHISALQSIGVTPHHRKSFKPVHNI 179 >gi|229586446|ref|YP_002844947.1| ribonuclease HII [Rickettsia africae ESF-5] gi|259494072|sp|C3PMP4|RNH2_RICAE RecName: Full=Ribonuclease HII; Short=RNase HII gi|228021496|gb|ACP53204.1| Ribonuclease HII [Rickettsia africae ESF-5] Length = 193 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 89/178 (50%), Positives = 115/178 (64%), Gaps = 2/178 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 VAGIDE GRG LAGPVV +A+I+D NI GI DSKK+S KKRE LYE+ITS+ + + + Sbjct: 16 IVAGIDEAGRGPLAGPVVASAVIVDNANIITGIKDSKKLSKKKRELLYEQITSNYVWATA 75 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SH ID NI +AT A AV NL + P L+DG +D + ++I GD++SL Sbjct: 76 IISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKD--ERFVSIINGDNLSL 133 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SIAAASI+AKVTRDRLM ++P Y + + GY T +H + I G S HR +FR Sbjct: 134 SIAAASIVAKVTRDRLMLDLSAEFPQYLWHKNSGYGTKEHIEAINIYGLSPYHRRSFR 191 >gi|269123118|ref|YP_003305695.1| Ribonuclease H [Streptobacillus moniliformis DSM 12112] gi|268314444|gb|ACZ00818.1| Ribonuclease H [Streptobacillus moniliformis DSM 12112] Length = 199 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 80/200 (40%), Positives = 116/200 (58%), Gaps = 10/200 (5%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHKKREE 70 ++ + + + + G+DE GRG LAGPVV A + ++ + +NDSKK++ KKR E Sbjct: 3 WKFDKSFKRR----IIGVDEAGRGPLAGPVVAACVCINKYSKKLEELNDSKKLTDKKRRE 58 Query: 71 LYEKITSSA--IISISSASHQYIDKHNIHKATLDAIYHAVENL-QVIPRSALIDGRSIPE 127 L+ +T++ I + + ID+ NI AT A+ +A++N+ + L+DG + Sbjct: 59 LFNYLTTNDDIKIGVGIVDEKVIDEINILNATFLAMNNALDNMEKDEKDLVLVDGNKEIK 118 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + A++KGD SLSIAAASIIAKVTRD +M YP Y F H GY T H + Sbjct: 119 GYLGKQEAIVKGDGKSLSIAAASIIAKVTRDNIMEEYDLIYPGYEFAKHKGYGTKMHYEC 178 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 IKEKG IHRL+F L+NL Sbjct: 179 IKEKGRCYIHRLSF--LKNL 196 >gi|15892187|ref|NP_359901.1| ribonuclease HII [Rickettsia conorii str. Malish 7] gi|20139552|sp|Q92J05|RNH2_RICCN RecName: Full=Ribonuclease HII; Short=RNase HII gi|15619319|gb|AAL02802.1| ribonuclease HII [Rickettsia conorii str. Malish 7] Length = 193 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 89/178 (50%), Positives = 115/178 (64%), Gaps = 2/178 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 VAGIDE GRG LAGPVV +A+I+D NI GI DSKK+S KKRE LYE+ITS+ + + + Sbjct: 16 IVAGIDEAGRGPLAGPVVASAVIVDNANIITGIKDSKKLSKKKRELLYEQITSNYVWATA 75 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SH ID NI +AT A AV NL + P L+DG +D + ++I GD++SL Sbjct: 76 IISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKD--ERFVSIINGDNLSL 133 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SIAAASI+AKVTRDRLM ++P Y + + GY T +H + I G S HR +FR Sbjct: 134 SIAAASIVAKVTRDRLMLDLSAEFPQYLWHKNSGYGTKEHIEAINIHGLSPYHRRSFR 191 >gi|118466028|ref|YP_882929.1| ribonuclease HII [Mycobacterium avium 104] gi|189043629|sp|A0QJ41|RNH2_MYCA1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|118167315|gb|ABK68212.1| ribonuclease HII [Mycobacterium avium 104] Length = 230 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 75/198 (37%), Positives = 111/198 (56%), Gaps = 4/198 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE+ + + PVAG+DEVGRGA AGP+VVAA +L P + ++DSKK++ RE L Sbjct: 11 LESALYRSGLGPVAGVDEVGRGACAGPLVVAACVLGPGKLESLAALDDSKKLTESVRERL 70 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ + +D+ +H A ++ + AV L + P L DG +P L Sbjct: 71 FPVIRRYALAYHVVFIPPAEVDRRGVHVANIEGMRRAVAGLSLRPGYVLSDGFRVP-GLA 129 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+++ IAAAS++AKV+RDRLM ++P YGF H GY T H + Sbjct: 130 VPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMDAEHPGYGFADHKGYSTPAHSAALAR 189 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP HR +F +R ++ Sbjct: 190 LGPCPQHRHSFINVRRVA 207 >gi|34580789|ref|ZP_00142269.1| ribonuclease HII [Rickettsia sibirica 246] gi|28262174|gb|EAA25678.1| ribonuclease HII [Rickettsia sibirica 246] Length = 193 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 89/178 (50%), Positives = 115/178 (64%), Gaps = 2/178 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 VAGIDE GRG LAGPVV +A+I+D NI GI DSKK+S KKRE LYE+ITS+ + + + Sbjct: 16 IVAGIDEAGRGPLAGPVVASAVIVDNANIITGIKDSKKLSKKKRELLYEQITSNYVWATA 75 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SH ID NI +AT A AV NL + P L+DG +D + ++I GD++SL Sbjct: 76 IISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKD--ERFVSIINGDNLSL 133 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SIAAASI+AKVTRDRLM ++P Y + + GY T +H + I G S HR +FR Sbjct: 134 SIAAASIVAKVTRDRLMLDLSAEFPQYLWHKNSGYGTKEHIEAINIHGLSPYHRRSFR 191 >gi|148292195|dbj|BAF62910.1| putative ribonuclease H [uncultured bacterium] Length = 229 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 76/218 (34%), Positives = 115/218 (52%), Gaps = 17/218 (7%) Query: 2 FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAA-IILD--PNNIPFGIN 58 F ++ + P + LE+ V G+DE GRG AGPV AA I +++P + Sbjct: 9 FNDTASDLPDYTLESA--ASGNGAVIGVDEAGRGPWAGPVTAAAFWIYPAAKDSLPASLT 66 Query: 59 DSKKISHKKREELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYHAVENL---- 111 DSKK+S KR+++ + + + + ++ +S ID I AT A+ AV L Sbjct: 67 DSKKLSASKRQQIEQALCAPHSQHLWAVKHSSVNQIDTCGILPATFAAMAEAVAELAKTL 126 Query: 112 ----QVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + L+DG +P L AV++GDS SLSIAAASI+AK +RD +M Sbjct: 127 QKRHNLPVAMVLVDGNLLPP-LDFPCQAVVRGDSRSLSIAAASILAKQSRDEVMTELASH 185 Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 YPDYG+ ++ GY T HQQ ++ G + HR +F P++ Sbjct: 186 YPDYGWQTNAGYGTKAHQQALQRCGITPHHRKSFAPIK 223 >gi|258511350|ref|YP_003184784.1| Ribonuclease H [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478076|gb|ACV58395.1| Ribonuclease H [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 216 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 76/200 (38%), Positives = 114/200 (57%), Gaps = 8/200 (4%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHK 66 + L+ + AG+DEVGRG +AGPVV A+++L + + DSK++ Sbjct: 7 RYRLDLAL--SGGCRTAGVDEVGRGCIAGPVVAASVVLPLERETYEELKDVMDSKQLKPD 64 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 RE L ++I + A+ + I AS + ID+ NI +AT A+ +++ L + AL+DG Sbjct: 65 VRERLADRIRAKALAVGIGMASPEEIDRLNILQATQLAMKRSLDALDIPVDLALVDGNRG 124 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 V+ GD+ SL +AAAS+IAKV RDRLM + +P YGF HVGY T H Sbjct: 125 FRHR-VPVLPVVDGDARSLLVAAASVIAKVFRDRLMAKLDEGFPGYGFSEHVGYGTRAHL 183 Query: 186 QVIKEKGPSCIHRLTFRPLR 205 + ++ GPS +HRL+F P+R Sbjct: 184 EALRRLGPSVVHRLSFAPVR 203 >gi|254776202|ref|ZP_05217718.1| ribonuclease HII [Mycobacterium avium subsp. avium ATCC 25291] Length = 239 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 75/198 (37%), Positives = 111/198 (56%), Gaps = 4/198 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE+ + + PVAG+DEVGRGA AGP+VVAA +L P + ++DSKK++ RE L Sbjct: 20 LESALYRSGLGPVAGVDEVGRGACAGPLVVAACVLGPAKLESLAALDDSKKLTESVRERL 79 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ + +D+ +H A ++ + AV L + P L DG +P L Sbjct: 80 FPVIRRYALAYHVVFIPPAEVDRRGVHVANIEGMRRAVAGLSLRPGYVLSDGFRVP-GLA 138 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+++ IAAAS++AKV+RDRLM ++P YGF H GY T H + Sbjct: 139 VPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMDAEHPGYGFADHKGYSTPAHSAALAR 198 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP HR +F +R ++ Sbjct: 199 LGPCPQHRHSFINVRRVA 216 >gi|307244425|ref|ZP_07526536.1| ribonuclease HII [Peptostreptococcus stomatis DSM 17678] gi|306492244|gb|EFM64286.1| ribonuclease HII [Peptostreptococcus stomatis DSM 17678] Length = 263 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 122/195 (62%), Gaps = 4/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + VAG+DEVGRG LAGPVV A ++L PN GINDSKK+S +KR+ LY+ Sbjct: 72 YENECYKNGAIFVAGLDEVGRGPLAGPVVAAVVVLKPNARIEGINDSKKLSEEKRDALYD 131 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I + AI I A + ID+HNI AT A+ A+E L+V L D IP + Sbjct: 132 IIINEAIDYGIGMADNFEIDEHNILNATYIAMRRALEKLEVEVDCLLNDAVRIP-GVDIP 190 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +IKGD+ S+SIAAASI+AKVTRDR+M K+YP YGF S+ GY T+ H Q +++ G Sbjct: 191 QMPIIKGDAKSISIAAASIVAKVTRDRMMVDYDKEYPGYGFASNKGYGTSDHYQGLEKFG 250 Query: 193 PSCIHRLTFRPLRNL 207 + IHR +F L+NL Sbjct: 251 RTKIHRNSF--LKNL 263 >gi|187917927|ref|YP_001883490.1| ribonuclease HII [Borrelia hermsii DAH] gi|238689305|sp|B2S1N3|RNH2_BORHD RecName: Full=Ribonuclease HII; Short=RNase HII gi|119860775|gb|AAX16570.1| ribonuclease HII [Borrelia hermsii DAH] Length = 181 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 79/179 (44%), Positives = 112/179 (62%), Gaps = 3/179 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDEVGRG + GPV+ AA+I PN + ++DSKK+ KRE L I ++ + Sbjct: 2 ICGIDEVGRGCIFGPVLSAAVIFKGNPNFLNE-LDDSKKLKKAKREYLSSLILENSYYAF 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S++ IDK NIH A+L A+ A E L + L+DG+ IP+ + A+IKGDSI Sbjct: 61 AEVSNETIDKINIHHASLLAMQIAYEKLDINCDLVLVDGKFIPKIKAKKIQAIIKGDSII 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I AASIIAKV RD+LM +K YP Y + + GYPT +H++ IK+ G S +HR +F+ Sbjct: 121 NEIKAASIIAKVQRDKLMDEYNKIYPLYALNKNKGYPTKEHKEAIKKHGISNLHRRSFK 179 >gi|145224747|ref|YP_001135425.1| ribonuclease HII [Mycobacterium gilvum PYR-GCK] gi|315445077|ref|YP_004077956.1| RNase HII [Mycobacterium sp. Spyr1] gi|189043630|sp|A4TE84|RNH2_MYCGI RecName: Full=Ribonuclease HII; Short=RNase HII gi|145217233|gb|ABP46637.1| RNase HII [Mycobacterium gilvum PYR-GCK] gi|315263380|gb|ADU00122.1| RNase HII [Mycobacterium sp. Spyr1] Length = 253 Score = 220 bits (562), Expect = 7e-56, Method: Composition-based stats. Identities = 81/199 (40%), Positives = 116/199 (58%), Gaps = 4/199 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREEL 71 LE+ + + PVAG+DEVGRGA AGP+VVAA IL PN + ++DSKK++ +RE L Sbjct: 20 LESALYRAGLGPVAGVDEVGRGACAGPLVVAACILGPNRLESLSALDDSKKLNESERERL 79 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ + +D+ +H A ++ + AV L V P L DG +P LP Sbjct: 80 FPLIRRYAVAFHVVFIPSVEVDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVP-GLP 138 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + V+ GD+ + IAAAS++AKV+RDRLM +++P YGF H GY T H + + Sbjct: 139 MPSLPVVGGDAAAACIAAASVLAKVSRDRLMVAMDQEHPGYGFADHKGYSTRAHSAALND 198 Query: 191 KGPSCIHRLTFRPLRNLSV 209 GPS HR +F +R L V Sbjct: 199 LGPSTQHRFSFINVRRLVV 217 >gi|83754963|pdb|2ETJ|A Chain A, Crystal Structure Of Ribonuclease Hii (Ec 3.1.26.4) (Rnase Hii) (Tm0915) From Thermotoga Maritima At 1.74 A Resolution Length = 250 Score = 220 bits (562), Expect = 8e-56, Method: Composition-based stats. Identities = 81/198 (40%), Positives = 106/198 (53%), Gaps = 18/198 (9%) Query: 17 MVREKNMWPVAGIDEVGRGALAGP-------VVVAAIILDPNNIPFGINDSKKISHKKRE 69 + +K VAG+DE GRG LAGP + GINDSK++S KRE Sbjct: 17 ELYKKEFGIVAGVDEAGRGCLAGPVVAAAVVL---------EKEIEGINDSKQLSPAKRE 67 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L ++I A + I AS + ID +NI AT A A+ENL V P L+DG+ I +L Sbjct: 68 RLLDEIXEKAAVGIGIASPEEIDLYNIFNATKLAXNRALENLSVKPSFVLVDGKGI--EL 125 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++KGD S I AASI+AKV RDRL H+ YP + F H GY T +H I+ Sbjct: 126 SVPGTCLVKGDQKSKLIGAASIVAKVFRDRLXSEFHRXYPQFSFHKHKGYATKEHLNEIR 185 Query: 190 EKGPSCIHRLTFRPLRNL 207 + G IHRL+F P+ L Sbjct: 186 KNGVLPIHRLSFEPVLEL 203 >gi|227833393|ref|YP_002835100.1| Ribonuclease HII [Corynebacterium aurimucosum ATCC 700975] gi|262184381|ref|ZP_06043802.1| ribonuclease HII [Corynebacterium aurimucosum ATCC 700975] gi|227454409|gb|ACP33162.1| Ribonuclease HII [Corynebacterium aurimucosum ATCC 700975] Length = 213 Score = 220 bits (562), Expect = 8e-56, Method: Composition-based stats. Identities = 75/194 (38%), Positives = 107/194 (55%), Gaps = 4/194 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 E + + + PVAG+DE GRGA GPV +AA IL +P ++DSKK++ RE+L Sbjct: 10 YEVALSKAGLGPVAGVDEAGRGACCGPVTIAACILPDRILPGLEWLDDSKKLTPAAREKL 69 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 I A+ S+ + ID I A L + AV L + P L D +P LP Sbjct: 70 EPVIKRRALAWSVVHIGAKGIDAFGIQHANLSGMRRAVAQLGIRPGYVLSDALFVP-GLP 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD+ + IAAAS++AKV+RDRLM K+YP Y ++H GY TA HQ+ I Sbjct: 129 APQLPIIGGDTAARCIAAASVLAKVSRDRLMADVAKQYPGYALETHKGYGTAVHQEAIAR 188 Query: 191 KGPSCIHRLTFRPL 204 G + HR+++R + Sbjct: 189 LGATPEHRMSYRNV 202 >gi|94985723|ref|YP_605087.1| ribonuclease H [Deinococcus geothermalis DSM 11300] gi|94556004|gb|ABF45918.1| Ribonuclease H [Deinococcus geothermalis DSM 11300] Length = 224 Score = 220 bits (562), Expect = 8e-56, Method: Composition-based stats. Identities = 71/199 (35%), Positives = 107/199 (53%), Gaps = 3/199 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + E + + VAG+DE GRGA AGPV VAA+IL + DSK+++ +RE Sbjct: 23 PDWAFEREHWRRGYFRVAGVDEAGRGAWAGPVTVAAVILPGLATEYPFRDSKQLTPAQRE 82 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L ++ A+ ++ A + I++ NI AT A A+ L P++ + D + Sbjct: 83 ALAAQVRQVAVAWAVEHAWPEEIERLNILGATHAAAARALARLDPPPQALVTDYLRLRTA 142 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LP A K D++S S+AAAS++AK RDRLM +YP YGF +H GY H+ + Sbjct: 143 LPL--LAPPKADALSYSVAAASLLAKTERDRLMAELDARYPGYGFAAHKGYGAPAHRAAL 200 Query: 189 KEKGPSCIHRLTFRPLRNL 207 + G S +HR + P+ L Sbjct: 201 ERLGVSELHRRGYAPIARL 219 >gi|15806947|ref|NP_295672.1| ribonuclease HII [Deinococcus radiodurans R1] gi|6459735|gb|AAF11501.1|AE002033_9 ribonuclease HII [Deinococcus radiodurans R1] Length = 212 Score = 220 bits (562), Expect = 9e-56, Method: Composition-based stats. Identities = 72/199 (36%), Positives = 112/199 (56%), Gaps = 3/199 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + E + + VAG+DE GRGA AGP+ VAA+IL + + DSK++S RE Sbjct: 8 PDWAYEREHWRRGHFRVAGVDEAGRGAWAGPLTVAAVILPGTSQEYPFRDSKQLSPAARE 67 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E ++ A+ ++ A + ID+ N+ AT A A+ L+ P++ + D + D Sbjct: 68 EYAAEVRRVAVAWAVEHAWPEEIDRLNVLGATHAAALRAIARLEPPPQALVTDYLRLRAD 127 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LP A + D++S S+AAAS++AK RDRLMR ++P YGF +H GY H+ + Sbjct: 128 LPLS--APPRADALSYSVAAASLLAKTERDRLMRELDAEFPGYGFAAHKGYGAPAHRAAL 185 Query: 189 KEKGPSCIHRLTFRPLRNL 207 +E G + HR ++ P+R L Sbjct: 186 RELGVTEQHRRSYAPIRAL 204 >gi|203283974|ref|YP_002221714.1| ribonuclease H [Borrelia duttonii Ly] gi|238690551|sp|B5RKU7|RNH2_BORDL RecName: Full=Ribonuclease HII; Short=RNase HII gi|201083417|gb|ACH93008.1| ribonuclease H [Borrelia duttonii Ly] Length = 181 Score = 220 bits (562), Expect = 9e-56, Method: Composition-based stats. Identities = 79/181 (43%), Positives = 111/181 (61%), Gaps = 3/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDEVGRG + GPV+ AA+I PN + ++DSKK++ KRE L I +A + Sbjct: 2 ICGIDEVGRGCIFGPVLSAAVIFKSKPNFLNE-LDDSKKLTKTKREYLSALILENAYYAF 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S++ IDK NIH A+L A+ A + L + L+DG+ IP+ Q A+IKGDS+ Sbjct: 61 ADISNEIIDKINIHNASLLAMQIAYQKLNIECNLVLVDGKFIPKIQAKQIRAIIKGDSMI 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I AASIIAKV RD+LM K YP YG + GYPT +H+ IK+ G +HR +F+ Sbjct: 121 DEIKAASIIAKVQRDKLMVEYDKIYPLYGLKKNKGYPTKEHKDAIKKHGILSLHRKSFQL 180 Query: 204 L 204 + Sbjct: 181 I 181 >gi|237785759|ref|YP_002906464.1| Ribonuclease HII [Corynebacterium kroppenstedtii DSM 44385] gi|237758671|gb|ACR17921.1| Ribonuclease HII [Corynebacterium kroppenstedtii DSM 44385] Length = 261 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 73/202 (36%), Positives = 107/202 (52%), Gaps = 6/202 (2%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKI 63 +P+ + E + + + PVAG+DE GRGA GP+ +AA IL P + + DSKK+ Sbjct: 50 MPQARTY--EDALVKAGLGPVAGVDEAGRGACCGPMAIAACILPAKPIHPLDKLTDSKKL 107 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S RE+L+ I SA S+ IDK+ + + + AV L P L D Sbjct: 108 SPTMREKLFPIIKDSAESWSVILIPAADIDKYGVQAMNIAGMRRAVGVLDQRPHYVLTDA 167 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 + + L +I GDS + IAAAS++AKVTRDR M ++YP YG + H GY TA Sbjct: 168 MRV-DGLTQPHLPIIGGDSAARCIAAASVLAKVTRDRYMCDLAERYPGYGLEKHKGYGTA 226 Query: 183 KHQQVIKEKGPSCIHRLTFRPL 204 +H ++ G + HR T+R + Sbjct: 227 QHIDAVRLHGGTPEHRYTYRNV 248 >gi|269469003|gb|EEZ80571.1| Ribonuclease HII [uncultured SUP05 cluster bacterium] Length = 171 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 73/170 (42%), Positives = 98/170 (57%), Gaps = 3/170 (1%) Query: 39 GPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHK 98 G V+ A+IL + + DSKK+S KKRE LY IT ++ A+ Q +D+ NI + Sbjct: 2 GSVIAGAVILPNDFNLPELTDSKKLSEKKREILYTLITQQCQWAVGEANTQEVDEINILQ 61 Query: 99 ATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD 158 AT+ A+ AVENL L+DG P+ C A+IKGD I+AASIIAKVTRD Sbjct: 62 ATMLAMRRAVENLNSQYDQVLVDGNRCPKLKNC--TAIIKGDLTEPVISAASIIAKVTRD 119 Query: 159 RLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC-IHRLTFRPLRNL 207 R M + +YP+YGF H GY T H Q +++ G HR +F P+R L Sbjct: 120 RQMILLDAQYPEYGFAQHKGYGTRVHLQALEKFGAIKGQHRYSFAPVRKL 169 >gi|308190329|ref|YP_003923260.1| ribonuclease H [Mycoplasma fermentans JER] gi|319777726|ref|YP_004137377.1| ribonuclease [Mycoplasma fermentans M64] gi|307625071|gb|ADN69376.1| ribonuclease H [Mycoplasma fermentans JER] gi|318038801|gb|ADV35000.1| Ribonuclease [Mycoplasma fermentans M64] Length = 198 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 63/183 (34%), Positives = 103/183 (56%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + G+DE GRG AGP+VV +I+ N I DSK++S K+REE E I +AI +++ Sbjct: 14 LIVGLDEAGRGCCAGPLVVGCVIMPQNFNHPLIKDSKQLSQKQREEALEIILENAIETVT 73 Query: 85 -SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + Q +D+ N +A+ + + L P + D I D+ ++KGD +S Sbjct: 74 TIINAQEVDQLNPKQASRIGMQRCINKLNTKPELVITDFEKI-NDINIPQINLVKGDQLS 132 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +++AAASI+AKVTRD +M KK+P Y F + GY T +H+ + + G HR +++ Sbjct: 133 INVAAASILAKVTRDLIMVGIDKKFPMYNFKKNKGYCTKEHEAAMSQYGICEFHRKSYKN 192 Query: 204 LRN 206 ++ Sbjct: 193 VKK 195 >gi|238810213|dbj|BAH70003.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 217 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 63/183 (34%), Positives = 103/183 (56%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + G+DE GRG AGP+VV +I+ N I DSK++S K+REE E I +AI +++ Sbjct: 33 LIVGLDEAGRGCCAGPLVVGCVIMPQNFNHPLIKDSKQLSQKQREEALEIILENAIETVT 92 Query: 85 -SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + Q +D+ N +A+ + + L P + D I D+ ++KGD +S Sbjct: 93 TIINAQEVDQLNPKQASRIGMQRCINKLNTKPELVITDFEKI-NDINIPQINLVKGDQLS 151 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +++AAASI+AKVTRD +M KK+P Y F + GY T +H+ + + G HR +++ Sbjct: 152 INVAAASILAKVTRDLIMVGIDKKFPMYNFKKNKGYCTKEHEAAMSQYGICEFHRKSYKN 211 Query: 204 LRN 206 ++ Sbjct: 212 VKK 214 >gi|297562257|ref|YP_003681231.1| ribonuclease H [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846705|gb|ADH68725.1| Ribonuclease H [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 232 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 70/197 (35%), Positives = 112/197 (56%), Gaps = 1/197 (0%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +ELE +R VAG+DEVGRGA AGP++V A + P G+ DSK+++ K+R E+ Sbjct: 16 YELEDELRSSGARVVAGVDEVGRGAWAGPLLVCAAVPGEGAPPPGLTDSKRLTPKRRREI 75 Query: 72 YEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +++ A + +S + ID+ + +A A A++ L P + ++DGR P Sbjct: 76 ADQLRPWVADHAFGWSSPEEIDEVGMTEALHRASRRALDALSPRPDAVILDGRHDFIGRP 135 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +KGD +S+AAA+I+AKV RD LM +P YGF+ GYP+ H+ + E Sbjct: 136 WRVRTCVKGDLACVSVAAAAILAKVRRDALMAELAADHPGYGFERAAGYPSPVHRAALAE 195 Query: 191 KGPSCIHRLTFRPLRNL 207 GP+ HR+++ L +L Sbjct: 196 SGPTPHHRMSWSYLDDL 212 >gi|169824229|ref|YP_001691840.1| ribonuclease HII [Finegoldia magna ATCC 29328] gi|167831034|dbj|BAG07950.1| ribonuclease HII [Finegoldia magna ATCC 29328] Length = 207 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 81/203 (39%), Positives = 112/203 (55%), Gaps = 19/203 (9%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREEL 71 E E + + GIDEVGRG LAGPVV AII+ N I G+ DSKK+S KKR + Sbjct: 8 EFEEEL-------ICGIDEVGRGPLAGPVVTCAIIMPKNCEIIEGVTDSKKLSEKKRIKF 60 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALIDGRS 124 + I + A+ S++ ID+ NI +AT ++ AVE+L+ + P +ID Sbjct: 61 KDMILNQALAYSVNFVDQGVIDEINIKQATRLSMKRAVESLKTKDNKFIKPDLIVIDAEE 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 I D+ + + +KGD I+ ASI+AKV RD M+ YP YGF+ H GY T H Sbjct: 121 IDTDI--KQMSFVKGDEKLYPISCASIVAKVIRDEYMKEMAVIYPQYGFEKHKGYGTKLH 178 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 +++I E G +HR TF LR L Sbjct: 179 REMILEHGECPLHRKTF--LRKL 199 >gi|319784761|ref|YP_004144237.1| ribonuclease H [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170649|gb|ADV14187.1| Ribonuclease H [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 233 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 99/200 (49%), Positives = 137/200 (68%), Gaps = 2/200 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E+P F E + +WPVAG+DE GRG LAGPVV AA++LDP NIP G++DSK++SH + Sbjct: 16 EKPDFSFETKAMAEGLWPVAGMDEAGRGPLAGPVVAAAVVLDPANIPDGLDDSKRLSHLQ 75 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE L+ +I SA +S++S S + ID NI KA+L+A+ A+ L + P+ AL DGR +P Sbjct: 76 REALFLRILGSAQAVSMASISAEGIDGSNILKASLEAMRRALVGLSIRPKLALADGRDVP 135 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LPC+ A+IKGD S SIAAASI+AKV RDR+M + YGF+ H+GY T +H+ Sbjct: 136 PGLPCEGRALIKGDQRSQSIAAASIVAKVMRDRMMCGCGNHHDRYGFEVHMGYATVRHRT 195 Query: 187 VIKEKGP-SCIHRLTFRPLR 205 I+ GP + +HR++F P R Sbjct: 196 AIEAHGPVARLHRVSFAPFR 215 >gi|198283300|ref|YP_002219621.1| Ribonuclease H [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665608|ref|YP_002425888.1| ribonuclease HII [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247821|gb|ACH83414.1| Ribonuclease H [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517821|gb|ACK78407.1| ribonuclease HII [Acidithiobacillus ferrooxidans ATCC 23270] Length = 196 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 105/179 (58%), Gaps = 5/179 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG LAGPVV AA+IL G++DSKK++ R +I + A+ S++ Sbjct: 15 AGVDEAGRGPLAGPVVAAAVIL--RVPLHGLDDSKKMTAAARTHWAARIRNEALAWSVAR 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A+ I+++NI +A+L A+ A+ L PR L+DG P Q ++ GD + Sbjct: 73 AAVWEIERYNILQASLRAMARAIVGLPRQPRRILVDGNQSPPGW--QVETLVGGDGRVDA 130 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAA I+AKVTRD M++ + YP YG H+GY TA H Q ++ GP +HR F P+ Sbjct: 131 IAAAGILAKVTRDEEMQLLDRYYPQYGLARHMGYGTAVHLQALRRWGPCALHRRGFGPV 189 >gi|157828142|ref|YP_001494384.1| ribonuclease HII [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932842|ref|YP_001649631.1| ribonuclease HII [Rickettsia rickettsii str. Iowa] gi|166226649|sp|A8GR51|RNH2_RICRS RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043649|sp|B0BWJ9|RNH2_RICRO RecName: Full=Ribonuclease HII; Short=RNase HII gi|157800623|gb|ABV75876.1| ribonuclease HII [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907929|gb|ABY72225.1| ribonuclease HII [Rickettsia rickettsii str. Iowa] Length = 193 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 90/178 (50%), Positives = 114/178 (64%), Gaps = 2/178 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 VAGIDE GRG LAGPVV +A+I+D NI GI DSKK+S KKRE LYE+ITS+ + + Sbjct: 16 IVAGIDEAGRGPLAGPVVASAVIVDNANIITGIKDSKKLSKKKRELLYEQITSNYAWATA 75 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SH ID NI +AT A AV NL + P L+DG +D + ++I GD++SL Sbjct: 76 IISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKD--ERFVSIINGDNLSL 133 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SIAAASIIAKVTRDRLM ++P Y + + GY T +H + I G S HR +FR Sbjct: 134 SIAAASIIAKVTRDRLMLDLSAEFPQYLWHKNSGYGTKEHIEAINIHGLSPYHRRSFR 191 >gi|313836667|gb|EFS74381.1| ribonuclease HII [Propionibacterium acnes HL037PA2] gi|314928174|gb|EFS92005.1| ribonuclease HII [Propionibacterium acnes HL044PA1] gi|314972173|gb|EFT16270.1| ribonuclease HII [Propionibacterium acnes HL037PA3] Length = 204 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 74/195 (37%), Positives = 109/195 (55%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELY 72 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L+ Sbjct: 4 ERALTRAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRITGLADSKTLSAAKREALF 63 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I + A+ +S D+ + +A + + AV L + P L DG + + L Sbjct: 64 DVIINKALAVSWVRVEADECDRLGMQEADISGLRRAVARLGIEPGYVLSDGFPV-DGLTV 122 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + KGDS+ +AAASI+AKV RDR+M ++ P Y F H GY TA H++ ++E Sbjct: 123 PDLGMWKGDSVCACVAAASIVAKVVRDRIMIAMDREVPGYDFAVHKGYATALHRRRLEEL 182 Query: 192 GPSCIHRLTFRPLRN 206 GPSC HR+++ ++ Sbjct: 183 GPSCQHRMSYANVQR 197 >gi|226356414|ref|YP_002786154.1| ribonuclease HII [Deinococcus deserti VCD115] gi|226318404|gb|ACO46400.1| putative Ribonuclease H (RNase HII) [Deinococcus deserti VCD115] Length = 218 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 69/199 (34%), Positives = 107/199 (53%), Gaps = 3/199 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + E + + VAG+DE GRGA AGPV VAA+IL + DSK++S +RE Sbjct: 8 PDWAYEREHWRRGYFRVAGVDEAGRGAWAGPVTVAAVILPGLAQEYPFRDSKQLSASQRE 67 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +++ A+ ++ A + I++ NI AT A A+ L P++ + D + Sbjct: 68 ACAQEVRRVALSYAVEHAWPEEIERLNILGATHAAAARALARLDPAPQALITDYLKLRTS 127 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LP A + D++S ++AAAS++AK RD LM ++P YGF H GY H+ + Sbjct: 128 LPLS--APPRADALSYTVAAASLLAKTERDHLMLELDLQHPGYGFAGHKGYGAPAHRAAL 185 Query: 189 KEKGPSCIHRLTFRPLRNL 207 E G S +HR ++ P+R L Sbjct: 186 AELGVSPVHRRSYAPIRAL 204 >gi|149926572|ref|ZP_01914833.1| Ribonuclease H [Limnobacter sp. MED105] gi|149824935|gb|EDM84149.1| Ribonuclease H [Limnobacter sp. MED105] Length = 218 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 76/198 (38%), Positives = 116/198 (58%), Gaps = 8/198 (4%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 E++ V G+DE GRG L GPVV A +L+ N G+ SK +S KKR+ L I Sbjct: 11 QAYAEQHSLQVIGVDEAGRGPLCGPVVAGAALLNQPNTIDGLACSKTLSAKKRDSLETAI 70 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVE------NLQVIPRSALIDGRSIPED 128 +A +++ A+ + ID+ NI +A+L A++ AV+ L+ +DG +P+ Sbjct: 71 RRNAKACAVAHATVEEIDRLNILQASLLAMWRAVDLVLDQTGLKPKQCLIAVDGNKLPK- 129 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 P QA AV+KGD+ +I+AASI+AKV RD + ++P Y D H+GYPTA+H ++ Sbjct: 130 WPYQAIAVVKGDTKIPAISAASILAKVARDEWCKTHALQFPQYELDIHMGYPTARHMALL 189 Query: 189 KEKGPSCIHRLTFRPLRN 206 E G + +HR +FRP+R Sbjct: 190 LEHGATQLHRKSFRPVRE 207 >gi|254513857|ref|ZP_05125918.1| ribonuclease HII [gamma proteobacterium NOR5-3] gi|219676100|gb|EED32465.1| ribonuclease HII [gamma proteobacterium NOR5-3] Length = 204 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 86/201 (42%), Positives = 126/201 (62%), Gaps = 3/201 (1%) Query: 9 RPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 P + EA + + + G+DEVGRG LAG VV AA++L+ + G+ DSKK++ ++ Sbjct: 1 MPLSDWEAALGDLPEEACIVGVDEVGRGPLAGDVVAAAVVLNSADPIDGLADSKKLTARR 60 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE L E++ A +++ A+ + ID NI +A+L A++ AV+ L + P L+DGR +P Sbjct: 61 REALSEQLHLRAHGVALGLATPEEIDDLNILQASLLAMWRAVDALGMTPDLVLVDGRQLP 120 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + AVIKGDS IAAASI+AKV RDR M H ++P YGFD+H GYPTA H Sbjct: 121 R-WNHPSIAVIKGDSRVPQIAAASIVAKVARDRYMCEQHLRWPMYGFDAHKGYPTAAHLA 179 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 ++E G S +HR +F P+R + Sbjct: 180 ALREHGVSPLHRRSFAPVRAV 200 >gi|291320659|ref|YP_003515924.1| ribonuclease H II [Mycoplasma agalactiae] gi|290752995|emb|CBH40971.1| Ribonuclease H II [Mycoplasma agalactiae] Length = 207 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 72/185 (38%), Positives = 112/185 (60%), Gaps = 2/185 (1%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81 +AG+DE GRG AGP+VVA++I+ N INDSKK+S K+R+ L+++I + I Sbjct: 12 YKLIAGVDEAGRGCCAGPLVVASVIMPKNYNNERINDSKKLSAKQRDILFDEILNVCIDY 71 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I + Y+DK+N K++ + + +++L P + D I E L + ++KGDS Sbjct: 72 HIVTLPSSYVDKYNPKKSSKNGMKICIDSLNTKPDLVITDFEKIDE-LAIKQVNLVKGDS 130 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IS ++A ASI+AKVTRDR M KY +Y F+ H GY T +H + I + G + HRLT+ Sbjct: 131 ISFNVACASILAKVTRDRFMIKIANKYKEYEFEKHKGYCTKRHTESIIQYGATPEHRLTY 190 Query: 202 RPLRN 206 + ++ Sbjct: 191 KNVKK 195 >gi|313901245|ref|ZP_07834733.1| ribonuclease HII [Clostridium sp. HGF2] gi|312954203|gb|EFR35883.1| ribonuclease HII [Clostridium sp. HGF2] Length = 207 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 71/197 (36%), Positives = 111/197 (56%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + ++ + GIDE GRG +AGP+VVAA+ P I DSKK+S KKR L+ Sbjct: 6 EYEQVWWQQGKRCIVGIDEAGRGPIAGPLVVAAVAFPPGYSHPEIYDSKKLSDKKRRALF 65 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++ + A+ I + ID+ NI++AT A+ + ++ L D +P + Sbjct: 66 HEVVAQALEYHIRIIEPKIIDELNIYRATQRAMQD-ISDMFAHADGVLTDAMPLPHN-ER 123 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +++KGD S+SIAAASI+AKVTRD +M ++YP YGF H GYPT H + + Sbjct: 124 DVISLVKGDQKSVSIAAASILAKVTRDCMMEAYDRQYPQYGFARHKGYPTKAHIEALHTY 183 Query: 192 GP-SCIHRLTFRPLRNL 207 G + ++R ++ P+ + Sbjct: 184 GVITGLYRESYGPVAAM 200 >gi|291543926|emb|CBL17035.1| RNase HII [Ruminococcus sp. 18P13] Length = 205 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 82/198 (41%), Positives = 121/198 (61%), Gaps = 5/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE + VR G+DE GRG LAG V AA++L P+ + G++DSKK++ K+RE L Sbjct: 12 FEYDEAVRNS-YPVFCGVDEAGRGPLAGDVYAAAVVLPPDVVIPGLDDSKKLTEKRREAL 70 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y++I + A I++A+ + I++ NI +A + A+ AV L + + LIDG +P + Sbjct: 71 YDEIIAKASACCIAAATVEEIEQLNILQAAMLAMTRAVSGLDIPVQCVLIDGNRLPR-MN 129 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 AVI GD+ S SIAAAS++AKV RDR M ++YP+YGF H GY T H + + Sbjct: 130 LPMQAVIHGDATSASIAAASVLAKVARDRYMLALDQQYPEYGFCKHKGYGTKAHYEALAA 189 Query: 191 KGPSCIHRLTFRPLRNLS 208 G S +HR +F L+NL+ Sbjct: 190 HGISPVHRRSF--LKNLT 205 >gi|289427787|ref|ZP_06429498.1| ribonuclease HII [Propionibacterium acnes J165] gi|289159051|gb|EFD07244.1| ribonuclease HII [Propionibacterium acnes J165] Length = 217 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELY 72 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L+ Sbjct: 17 ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 76 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A+ +S D+ + +A + + AV L V P L DG + + L Sbjct: 77 NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 135 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 136 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 195 Query: 192 GPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 196 GPSRQHRMSYANVRR 210 >gi|325479041|gb|EGC82142.1| ribonuclease HII [Anaerococcus prevotii ACS-065-V-Col13] Length = 209 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 81/180 (45%), Positives = 109/180 (60%), Gaps = 3/180 (1%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81 +AGIDEVGRG LAGPVV A+I+ ++ GI DSKK+S KK L EKI I Sbjct: 18 YKLIAGIDEVGRGPLAGPVVTCAVIMKSDSAIDGITDSKKLSRKKMLNLKEKILEDTICY 77 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 + A+ + ID+ NI AT A+ A+ NL++ P LID I D+P ++KGD Sbjct: 78 AYGYANPRLIDRVNIKNATHKAMEDALNNLKIKPEIVLIDAERIDTDIP--QLNIVKGDL 135 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I+ ASI+AK+ RD +M K YP+YGFD+++GY T KH Q ++E G + IHR TF Sbjct: 136 NEYVISCASILAKIRRDDIMINFSKLYPNYGFDTNMGYGTKKHYQGLEEYGETSIHRQTF 195 >gi|282854576|ref|ZP_06263911.1| ribonuclease HII [Propionibacterium acnes J139] gi|282582158|gb|EFB87540.1| ribonuclease HII [Propionibacterium acnes J139] Length = 217 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELY 72 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L+ Sbjct: 17 ERALTRAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 76 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A+ +S D+ + +A + + AV L V P L DG + + L Sbjct: 77 NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 135 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 136 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 195 Query: 192 GPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 196 GPSRQHRMSYANVRR 210 >gi|314923942|gb|EFS87773.1| ribonuclease HII [Propionibacterium acnes HL001PA1] gi|314966113|gb|EFT10212.1| ribonuclease HII [Propionibacterium acnes HL082PA2] gi|315094908|gb|EFT66884.1| ribonuclease HII [Propionibacterium acnes HL060PA1] gi|315104180|gb|EFT76156.1| ribonuclease HII [Propionibacterium acnes HL050PA2] gi|327328010|gb|EGE69779.1| ribonuclease HII [Propionibacterium acnes HL103PA1] Length = 204 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELY 72 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L+ Sbjct: 4 ERALTRAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 63 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A+ +S D+ + +A + + AV L V P L DG + + L Sbjct: 64 NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 122 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 123 PDLGMWKGDSVCACVAAASIVAKVARDRIMIALDAEIPGYDFAVHKGYATALHQRRLKEL 182 Query: 192 GPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 183 GPSRQHRMSYANVRR 197 >gi|317058954|ref|ZP_07923439.1| ribonuclease HII [Fusobacterium sp. 3_1_5R] gi|313684630|gb|EFS21465.1| ribonuclease HII [Fusobacterium sp. 3_1_5R] Length = 211 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 82/200 (41%), Positives = 115/200 (57%), Gaps = 10/200 (5%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHK 66 E+ ++ + EK + G+DE GRG LAGPVV AA +L + I DSKK++ K Sbjct: 7 EQSLYDFDVEKGEK----IVGVDEAGRGPLAGPVVAAATLLKQYDRSLDSIQDSKKLTEK 62 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ----VIPRSALIDG 122 KRE L+ I + I AS + I+K+NI AT A+ A+ NL+ + + L+DG Sbjct: 63 KREALFSVIPQFFYVGIGQASVEEIEKYNILNATFLAMRRALANLEEQVEIQDATILVDG 122 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 + + AV+KGD+ SLSIAAASI+AKVTRD + K+YPDY F+ H GY T Sbjct: 123 NFTIRECQRKQEAVVKGDAKSLSIAAASIMAKVTRDHKLVELAKQYPDYLFEKHKGYGTK 182 Query: 183 KHQQVIKEKGPSC-IHRLTF 201 H++ I GP +HR +F Sbjct: 183 VHREKILSLGPIPGVHRDSF 202 >gi|257452411|ref|ZP_05617710.1| ribonuclease HII [Fusobacterium sp. 3_1_5R] Length = 210 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 82/200 (41%), Positives = 115/200 (57%), Gaps = 10/200 (5%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHK 66 E+ ++ + EK + G+DE GRG LAGPVV AA +L + I DSKK++ K Sbjct: 6 EQSLYDFDVEKGEK----IVGVDEAGRGPLAGPVVAAATLLKQYDRSLDSIQDSKKLTEK 61 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ----VIPRSALIDG 122 KRE L+ I + I AS + I+K+NI AT A+ A+ NL+ + + L+DG Sbjct: 62 KREALFSVIPQFFYVGIGQASVEEIEKYNILNATFLAMRRALANLEEQVEIQDATILVDG 121 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 + + AV+KGD+ SLSIAAASI+AKVTRD + K+YPDY F+ H GY T Sbjct: 122 NFTIRECQRKQEAVVKGDAKSLSIAAASIMAKVTRDHKLVELAKQYPDYLFEKHKGYGTK 181 Query: 183 KHQQVIKEKGPSC-IHRLTF 201 H++ I GP +HR +F Sbjct: 182 VHREKILSLGPIPGVHRDSF 201 >gi|295130970|ref|YP_003581633.1| ribonuclease HII [Propionibacterium acnes SK137] gi|291377067|gb|ADE00922.1| ribonuclease HII [Propionibacterium acnes SK137] Length = 217 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELY 72 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L+ Sbjct: 17 ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 76 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A+ +S D+ + +A + + AV L V P L DG + + L Sbjct: 77 NVIMDKALAVSWVGVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 135 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 136 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 195 Query: 192 GPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 196 GPSRQHRMSYANVRR 210 >gi|118471655|ref|YP_886782.1| ribonuclease HII [Mycobacterium smegmatis str. MC2 155] gi|166226626|sp|A0QV44|RNH2_MYCS2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|118172942|gb|ABK73838.1| ribonuclease HII [Mycobacterium smegmatis str. MC2 155] Length = 272 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 77/196 (39%), Positives = 111/196 (56%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE+ + + PVAG+DEVGRGA AGP+VVAA +L PN + ++DSKK+ K+RE L Sbjct: 20 LESALYRNGLGPVAGVDEVGRGACAGPLVVAACVLGPNRLESLAALDDSKKLGEKERERL 79 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ + +D+ +H A ++ + AV L V P L DG +P L Sbjct: 80 FPLIRRYALAYHVVFIPSHEVDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP-GLS 138 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+ + IAAAS++AKV+RDRLM +++P YGF H GY T H + Sbjct: 139 VPSLPVIGGDAAAACIAAASVLAKVSRDRLMVEMEEQHPGYGFAEHKGYITPAHTAALTR 198 Query: 191 KGPSCIHRLTFRPLRN 206 GP HR ++ +R Sbjct: 199 HGPCVEHRYSYVNVRR 214 >gi|148377935|ref|YP_001256811.1| ribonuclease H II [Mycoplasma agalactiae PG2] gi|148291981|emb|CAL59373.1| Ribonuclease H II [Mycoplasma agalactiae PG2] Length = 206 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 74/196 (37%), Positives = 112/196 (57%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E +AG+DE GRG AGP+VVA++I+ I I DSKK+S K+R+ L Sbjct: 2 LDYELKNWND-YKLIAGVDEAGRGCCAGPLVVASVIMPNGYINENIKDSKKLSAKQRDIL 60 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +++I I I + Y+DK+N K++ + + +++L P + D I E L Sbjct: 61 FDEILKVCIDYHIVTLPSSYVDKYNPKKSSKNGMKICIDSLNTKPDLVITDFEKIDE-LA 119 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + ++KGDSIS ++A ASI+AKVTRDR M KY +Y F+ H GY T +H + I + Sbjct: 120 IKQVNLVKGDSISFNVACASILAKVTRDRYMIKIANKYKEYEFEKHKGYCTKRHTESIIK 179 Query: 191 KGPSCIHRLTFRPLRN 206 G S HRLT++ +R Sbjct: 180 YGASPEHRLTYKNVRE 195 >gi|268611246|ref|ZP_06144973.1| ribonuclease HII [Ruminococcus flavefaciens FD-1] Length = 208 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 90/201 (44%), Positives = 127/201 (63%), Gaps = 5/201 (2%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F+ ++ +R K+ + GIDE GRG LAG V AA+IL+ + + +NDSKKIS K+R Sbjct: 8 KELFDYDSELR-KDYPVIVGIDEAGRGPLAGDVYAAAVILNDDTLINYLNDSKKISEKRR 66 Query: 69 EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E LY+++ A SI++AS + ID+ NI +AT A+ A E L V L+DG +P Sbjct: 67 ELLYDEVIEKAEKYSIATASVKEIDELNILQATFLAMKRAYEGLGVRADLVLVDGNKLP- 125 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D+ + VIKGD+ S SI+AASI+AKV RDR MR +KYP Y FD H GY T H + Sbjct: 126 DIDAEMRYVIKGDATSASISAASILAKVARDRYMRDLAEKYPQYEFDRHKGYGTKLHYEK 185 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 ++E G S +HR +F L+ L+ Sbjct: 186 LEEFGISEVHRRSF--LKKLT 204 >gi|297587481|ref|ZP_06946125.1| ribonuclease H [Finegoldia magna ATCC 53516] gi|297574170|gb|EFH92890.1| ribonuclease H [Finegoldia magna ATCC 53516] Length = 207 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 79/203 (38%), Positives = 110/203 (54%), Gaps = 19/203 (9%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREEL 71 E E + + G+DEVGRG LAGPVV AII+ N I G+ DSKK+S KKR + Sbjct: 8 EFEEEL-------ICGVDEVGRGPLAGPVVTCAIIMPKNCEIIDGVTDSKKLSEKKRIKF 60 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALIDGRS 124 + I A+ S++ ID+ NI +A ++ AVE+L+ + P +ID Sbjct: 61 KDMILDQALAYSVNFVDQSVIDEINIKQANRLSMKRAVESLKTKDNKFIKPDLIVIDAEK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 I D+ + + +KGD I+ ASI+AKV RD M+ YP YGF+ H GY T H Sbjct: 121 IDTDI--KQMSFVKGDEKLYPISCASIVAKVIRDEYMKDMAVIYPQYGFEKHKGYGTKLH 178 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 +++I E G +HR TF LR L Sbjct: 179 REMILEHGECPLHRKTF--LRKL 199 >gi|226939651|ref|YP_002794724.1| ribonuclease HII [Laribacter hongkongensis HLHK9] gi|259494068|sp|C1D4C1|RNH2_LARHH RecName: Full=Ribonuclease HII; Short=RNase HII gi|226714577|gb|ACO73715.1| Rnh2 [Laribacter hongkongensis HLHK9] Length = 198 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 77/185 (41%), Positives = 107/185 (57%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 V G+DE GRG LAG V AA+ILDP G+ DSKK+S +RE L I A+ Sbjct: 3 RRVCGVDEAGRGPLAGGVYAAAVILDPARPVEGLADSKKLSAARREALAPLIRERALAWC 62 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED-LPCQAFAVIKGDS 141 ++ A+ + ID+ NI AT+ A+ AV+ L V P + +DG +P L A A++KGD+ Sbjct: 63 VAWATVEEIDRLNILHATMLAMCRAVDGLAVPPDAIEVDGNRVPPFVLDIPARAIVKGDA 122 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +I+AASI+AK RD +YP YGF +H GYPTA H I+ G +HR +F Sbjct: 123 TVAAISAASILAKTARDAECLELDARYPGYGFAAHKGYPTAAHVAAIERLGVLPVHRRSF 182 Query: 202 RPLRN 206 P++ Sbjct: 183 GPVKR 187 >gi|254821206|ref|ZP_05226207.1| ribonuclease HII [Mycobacterium intracellulare ATCC 13950] Length = 239 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 76/198 (38%), Positives = 111/198 (56%), Gaps = 4/198 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 LE+ + + PVAG+DEVGRGA AGP+VVAA +L P + ++DSKK++ RE+L Sbjct: 20 LESALYRNGLGPVAGVDEVGRGACAGPLVVAACVLGPGRMESLAALDDSKKLTEAAREKL 79 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ + +D+ +H A ++ + AV L V P L DG +P L Sbjct: 80 FPLIRRYALAYHVVFIPPAEVDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP-GLA 138 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+++ IAAAS++AKV+RDRLM +P YGF H GY T H + Sbjct: 139 VPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMEADHPGYGFALHKGYSTPAHSTALAR 198 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP HR +F +R ++ Sbjct: 199 LGPCPEHRYSFINVRRVA 216 >gi|88706742|ref|ZP_01104444.1| Ribonuclease HII [Congregibacter litoralis KT71] gi|88699063|gb|EAQ96180.1| Ribonuclease HII [Congregibacter litoralis KT71] Length = 204 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 89/197 (45%), Positives = 124/197 (62%), Gaps = 3/197 (1%) Query: 13 ELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + EA + E + + G+DEVGRG LAG VV AA +LDP N G+ DSKK++ K+RE L Sbjct: 5 DWEAAIAELPDDACIVGVDEVGRGPLAGDVVAAAAVLDPANPIVGLTDSKKLTAKRREVL 64 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 E++ + A I++ AS ID NI +A+L A++ AV+ L + P L+DGR +P Sbjct: 65 REELLTRARGIALGRASPVEIDTLNILQASLLAMWRAVDALGLEPDLVLVDGRQLP-SWD 123 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + AV+KGD+ +IAAASI+AKV RD+ M H +P YGFD H GYPTA H +K Sbjct: 124 YASIAVVKGDARVPAIAAASIVAKVARDQYMCEQHALWPHYGFDRHKGYPTAAHMAALKT 183 Query: 191 KGPSCIHRLTFRPLRNL 207 G S +HR +F P+R + Sbjct: 184 YGVSPLHRRSFAPVRAV 200 >gi|226305946|ref|YP_002765906.1| ribonuclease HII [Rhodococcus erythropolis PR4] gi|259494071|sp|C0ZXT2|RNH2_RHOE4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|226185063|dbj|BAH33167.1| putative ribonuclease HII [Rhodococcus erythropolis PR4] Length = 226 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 76/194 (39%), Positives = 110/194 (56%), Gaps = 4/194 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREEL 71 +E+ + + PVAG+DE GRGA AGP+V+AA +L P ++DSKK++ + REEL Sbjct: 19 MESALARTGLGPVAGVDEAGRGACAGPLVIAACVLAPKPQAALARLDDSKKLTERAREEL 78 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ S+ S +D+ IH A ++ + AV L + P L DG +P L Sbjct: 79 FPAIKRLALAWSVVSVPAAEVDQIGIHVANIEGMRRAVAGLDLEPGYVLTDGFRVP-GLT 137 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD + IAAAS++AKVTRDR+M + +P YGF H GY T H + E Sbjct: 138 APSLPVIGGDGAAACIAAASVLAKVTRDRVMTEMDETHPGYGFAIHKGYSTPLHMDALDE 197 Query: 191 KGPSCIHRLTFRPL 204 GP HR+T+ + Sbjct: 198 LGPCPEHRMTYANV 211 >gi|227499923|ref|ZP_03930016.1| ribonuclease H [Anaerococcus tetradius ATCC 35098] gi|227218032|gb|EEI83305.1| ribonuclease H [Anaerococcus tetradius ATCC 35098] Length = 209 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 78/190 (41%), Positives = 113/190 (59%), Gaps = 4/190 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 +++ V EK +AGIDEVGRG LAGPVV A+I+ ++ G+ DSKK++ KK L Sbjct: 9 DIKRKVHEK-YELIAGIDEVGRGPLAGPVVTCALIMKKDSKIEGVTDSKKLTRKKMLVLK 67 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +KI + + + A+ IDK NI AT A+ A+ NL++ P LID I DLP Sbjct: 68 DKILADCLTYAYGYANSLLIDKLNIKNATHKAMEDALNNLKIRPEIVLIDAERINTDLP- 126 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++KGD I+ ASI+AK+ RD +M K Y YGF++++GY T KH + +++ Sbjct: 127 -QMNIVKGDLNEYVISCASILAKIRRDDIMINFSKIYKGYGFETNMGYGTKKHYEGLEKY 185 Query: 192 GPSCIHRLTF 201 G + IHR TF Sbjct: 186 GETPIHRQTF 195 >gi|323141923|ref|ZP_08076783.1| ribonuclease HII [Phascolarctobacterium sp. YIT 12067] gi|322413590|gb|EFY04449.1| ribonuclease HII [Phascolarctobacterium sp. YIT 12067] Length = 283 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 80/199 (40%), Positives = 123/199 (61%), Gaps = 2/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +LE + ++ +AG+DE GRG LAGP+V+AA+IL + G+NDSK++S KR+ L Sbjct: 62 LKLERELYDEGCELIAGVDEAGRGPLAGPLVIAAVILPKDVFISGLNDSKQLSAAKRDML 121 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y ++ + A+ I ++ S ID+ NI+ AT + +ENL P++ALID + Sbjct: 122 YNEVMAKALDIEVNIVSVSNIDELNIYYATQQGMAQVLENLHCRPQAALIDAMPVKVP-G 180 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +V+ GD++S SIAAASIIAKVTRDR+M YP YGF + GY + H Q + E Sbjct: 181 MKIESVVHGDALSASIAAASIIAKVTRDRIMERLDLVYPAYGFAHNKGYGSGAHMQAVSE 240 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + HR +F P++++ + Sbjct: 241 LGATRWHRRSFEPVKSMQL 259 >gi|271970454|ref|YP_003344650.1| ribonuclease H [Streptosporangium roseum DSM 43021] gi|270513629|gb|ACZ91907.1| Ribonuclease H [Streptosporangium roseum DSM 43021] Length = 222 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 76/199 (38%), Positives = 108/199 (54%), Gaps = 3/199 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + LE ++ VAG+DEVGRGA AGPV V A++ D + P G+ DSK +S +R Sbjct: 3 PSYALERLLSADGTKLVAGVDEVGRGAWAGPVAVCAVVTDLSEPPAGLTDSKMLSPARRT 62 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + +IT A I ASH+ ID + +A A A+ L V P + ++DG+ Sbjct: 63 SMVAEITGWAAGIGYGEASHEEIDALGMTEALRRAAGRALAGLPVRPDAVILDGKHDYLG 122 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 P IKGD +S+AAAS+IAKV RD M + +YGF + GYP+ HQ + Sbjct: 123 APWPVRCEIKGDLSCVSVAAASVIAKVRRDAYMASLGLE--EYGFADNAGYPSPVHQAAL 180 Query: 189 KEKGPSCIHRLTFRPLRNL 207 GP+ HRL++ L +L Sbjct: 181 ASLGPTAHHRLSWSYLDDL 199 >gi|313623979|gb|EFR94078.1| ribonuclease HII [Listeria innocua FSL J1-023] Length = 261 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 86/195 (44%), Positives = 117/195 (60%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK+++ KR+ L+ Sbjct: 60 RYETDLFKQGFQYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLNEAKRDMLF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I AI I I H ID+ NI++AT A+ A+ L P LID P Sbjct: 120 EVIKKEAISIGIGIIDHDIIDQVNIYEATKIAMREALVKLNPAPDFVLIDAM--PLKYSE 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDR+M+ + YP Y F +++GY T KH + Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRMMQQYDELYPGYDFANNMGYGTKKHLNGLDTI 237 Query: 192 GPSCIHRLTFRPLRN 206 G IHRL+F P++ Sbjct: 238 GICPIHRLSFSPVKE 252 >gi|313678810|ref|YP_004056550.1| ribonuclease HIII [Mycoplasma bovis PG45] gi|312950535|gb|ADR25130.1| ribonuclease HIII [Mycoplasma bovis PG45] Length = 207 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 74/201 (36%), Positives = 120/201 (59%), Gaps = 6/201 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 +E + K+ +AG+DE GRG AGP+VVA++I+ N + INDSKK+S K+RE Sbjct: 3 DYEFKNF---KDYKLIAGVDEAGRGCCAGPLVVASVIMPKNYVNERINDSKKLSPKQREI 59 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+++I + I I + Y+D++N +++ + + +++L P + D I + L Sbjct: 60 LFDEIIDNCIDYYILTLPASYVDEYNPKQSSKNGMKICIDSLNAKPEVVITDFEKI-DHL 118 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + ++KGDSIS ++A ASI+AKVTRDR M KY +Y F+ H GY T KH I Sbjct: 119 DIKQINLVKGDSISFNVACASILAKVTRDRYMIKIADKYKEYEFEKHKGYCTKKHTDAII 178 Query: 190 EKGPSCIHRLTFRPL-RNLSV 209 + G + HRLT++ + + +S+ Sbjct: 179 KYGVTAEHRLTYKNVIKAMSI 199 >gi|315917438|ref|ZP_07913678.1| ribonuclease HII [Fusobacterium gonidiaformans ATCC 25563] gi|313691313|gb|EFS28148.1| ribonuclease HII [Fusobacterium gonidiaformans ATCC 25563] Length = 211 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 80/200 (40%), Positives = 115/200 (57%), Gaps = 10/200 (5%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHK 66 E+ ++ + EK + G+DE GRG LAGPVV AA +L + I DSKK++ K Sbjct: 7 EQSLYDFDVEKGEK----IVGVDEAGRGPLAGPVVAAAALLKQYDRSLEPIQDSKKLTEK 62 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ----VIPRSALIDG 122 KRE L+ I + I AS + I+K+NI AT A+ A+ NL+ + + L+DG Sbjct: 63 KREALFSVIPQFFYVGIGQASVEEIEKYNILNATFLAMRRALGNLEEQVEIQDATILVDG 122 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 + + A++KGD+ SLSIAAASI+AKVTRD + ++YPDY F+ H GY T Sbjct: 123 NFTIRECERKQEAIVKGDAKSLSIAAASIMAKVTRDHELVELAEQYPDYFFEKHKGYGTK 182 Query: 183 KHQQVIKEKGPSC-IHRLTF 201 H++ I GP +HR +F Sbjct: 183 VHREKILSLGPIPGVHRDSF 202 >gi|303234893|ref|ZP_07321518.1| ribonuclease HII [Finegoldia magna BVS033A4] gi|302494011|gb|EFL53792.1| ribonuclease HII [Finegoldia magna BVS033A4] Length = 207 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 81/203 (39%), Positives = 112/203 (55%), Gaps = 19/203 (9%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREEL 71 E E + + GIDEVGRG LAGPVV AII+ N I G+ DSKK+S KKR + Sbjct: 8 EFEEEL-------ICGIDEVGRGPLAGPVVTCAIIMPKNCEIIDGVTDSKKLSEKKRIKF 60 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALIDGRS 124 + I + A+ S++ ID+ NI +AT ++ AVE+L+ + P +ID Sbjct: 61 KDMILNQALAYSVNFVDQGVIDEINIKQATRLSMKRAVESLKTKDNKFIKPDLIVIDAEE 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 I D+ + + +KGD I+ ASI+AKV RD M+ YP YGF+ H GY T H Sbjct: 121 IDTDI--KQMSFVKGDEKLYPISCASIVAKVIRDEYMKDMAVIYPQYGFEKHKGYGTKLH 178 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 +++I E G +HR TF LR L Sbjct: 179 REMILEHGECPLHRKTF--LRKL 199 >gi|257466281|ref|ZP_05630592.1| ribonuclease HII [Fusobacterium gonidiaformans ATCC 25563] Length = 210 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 80/200 (40%), Positives = 115/200 (57%), Gaps = 10/200 (5%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHK 66 E+ ++ + EK + G+DE GRG LAGPVV AA +L + I DSKK++ K Sbjct: 6 EQSLYDFDVEKGEK----IVGVDEAGRGPLAGPVVAAAALLKQYDRSLEPIQDSKKLTEK 61 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ----VIPRSALIDG 122 KRE L+ I + I AS + I+K+NI AT A+ A+ NL+ + + L+DG Sbjct: 62 KREALFSVIPQFFYVGIGQASVEEIEKYNILNATFLAMRRALGNLEEQVEIQDATILVDG 121 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 + + A++KGD+ SLSIAAASI+AKVTRD + ++YPDY F+ H GY T Sbjct: 122 NFTIRECERKQEAIVKGDAKSLSIAAASIMAKVTRDHELVELAEQYPDYFFEKHKGYGTK 181 Query: 183 KHQQVIKEKGPSC-IHRLTF 201 H++ I GP +HR +F Sbjct: 182 VHREKILSLGPIPGVHRDSF 201 >gi|163791099|ref|ZP_02185519.1| ribonuclease HII [Carnobacterium sp. AT7] gi|159873655|gb|EDP67739.1| ribonuclease HII [Carnobacterium sp. AT7] Length = 257 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 93/202 (46%), Positives = 128/202 (63%), Gaps = 3/202 (1%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 + ++E E+ +AGIDEVGRG LAGPVV AA++L + GINDSK++S Sbjct: 56 KQEEMLQIERYFWEQGTQYIAGIDEVGRGPLAGPVVAAAVVLPKDFDVLGINDSKQLSSA 115 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KRE L+E+I +A+ I I H IDK NI++AT A+ A++ L V P LID + Sbjct: 116 KREALFEQIQEAAVAIGIGVKDHHIIDKVNIYEATKLAMIEAIQQLPVQPEQLLIDAMHL 175 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P +P ++F IKGD+ S+SIAAASIIAKVTRDR+M YP YGF + GY T H Sbjct: 176 PVSIPQESF--IKGDAKSISIAAASIIAKVTRDRMMADYDDLYPGYGFAKNAGYGTKVHL 233 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 + ++++G IHR TF P++N+ Sbjct: 234 EGLEKQGACPIHRKTFAPVKNV 255 >gi|126663331|ref|ZP_01734329.1| ribonuclease HII [Flavobacteria bacterium BAL38] gi|126624989|gb|EAZ95679.1| ribonuclease HII [Flavobacteria bacterium BAL38] Length = 219 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 21/204 (10%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 N+ G DE GRG LAGPV AAI+L + +NDSK++S K R++L + AI Sbjct: 8 NLTLEIGTDEAGRGCLAGPVTAAAILLPEHFENTLLNDSKQLSEKNRKKLRPILEELAIS 67 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL----------- 129 +++ ID+ NI A++ A+ ++ L P ++DG Sbjct: 68 YAVTHIFSNEIDEINILNASMKAMQKSILQLNTKPEYIIVDGNRPLNGKLGMKQKTGKIF 127 Query: 130 ---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 +++KGD+ LSIAAAS++AK RD M H+++P Y + + GYP Sbjct: 128 SEEEIQFLKSIPNTSIVKGDAKYLSIAAASVLAKTYRDDYMDAIHEEFPMYNWKKNKGYP 187 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPL 204 T +H++ IK+ G HR++FR L Sbjct: 188 TVEHREAIKKYGACKYHRMSFRLL 211 >gi|114328522|ref|YP_745679.1| ribonuclease HII [Granulibacter bethesdensis CGDNIH1] gi|122326524|sp|Q0BQZ6|RNH2_GRABC RecName: Full=Ribonuclease HII; Short=RNase HII gi|114316696|gb|ABI62756.1| ribonuclease HII [Granulibacter bethesdensis CGDNIH1] Length = 219 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 87/206 (42%), Positives = 116/206 (56%), Gaps = 11/206 (5%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKI 63 + P LE VAG+DEVGRG LAGPVV AA++L + P + +DSKK+ Sbjct: 10 QMPDDRLEREAG----GLVAGVDEVGRGPLAGPVVAAAVLLPASGFPAHLAGLIDDSKKL 65 Query: 64 SHKKREELYEKITSSA--IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 R+ + + + I I +AS I + NI A++ A+ AVE L IP AL+D Sbjct: 66 DAAARDRAFAALLAEPGITIGIGAASVTEIGRLNILHASMLAMRRAVERLPTIPDLALVD 125 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 G P LPC A V+ GD+ LSIAAASIIAKV RDR M ++YP YG++ + GYPT Sbjct: 126 GNRAPA-LPCAARCVVGGDAKCLSIAAASIIAKVVRDRAMARLARRYPVYGWERNAGYPT 184 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207 H+ + E GP+ HR F +R L Sbjct: 185 PAHRAGLTEFGPTPHHRTAFGLVRQL 210 >gi|330993887|ref|ZP_08317819.1| Ribonuclease HII [Gluconacetobacter sp. SXCC-1] gi|329759155|gb|EGG75667.1| Ribonuclease HII [Gluconacetobacter sp. SXCC-1] Length = 217 Score = 218 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 82/204 (40%), Positives = 119/204 (58%), Gaps = 10/204 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISH 65 P + LE + VAG+DEVGRG LAGPVV AA++ P + ++DSKK+ Sbjct: 1 MPDYTLEHA----HGGRVAGVDEVGRGPLAGPVVAAAVMFPGSVPGVLADRLDDSKKLKP 56 Query: 66 KKREELYEKITSS--AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 R LY+ + +S +I + +AS I+++NI +A+ A+ AV L P L+DG Sbjct: 57 ALRARLYDVLLASPDVLIGVGAASVAEIERYNILRASWLAMQRAVGRLPRSPEFILVDGN 116 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + P D C A V+ GD ISLSIAAAS++AKV RDRLM +++P YG++ + GY TA Sbjct: 117 AAP-DFGCPAQCVVGGDGISLSIAAASVVAKVIRDRLMARLARRWPAYGWERNAGYGTAI 175 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H+ + +G S HR F +R + Sbjct: 176 HRAGLLAQGASPHHRAAFGTVRRI 199 >gi|289208655|ref|YP_003460721.1| ribonuclease H [Thioalkalivibrio sp. K90mix] gi|288944286|gb|ADC71985.1| Ribonuclease H [Thioalkalivibrio sp. K90mix] Length = 226 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 86/181 (47%), Positives = 111/181 (61%), Gaps = 2/181 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG LAGPVV AA+IL + G+ DSKK+S +R+ L +I A+ ++ Sbjct: 35 WVAGVDEVGRGPLAGPVVAAAVILPESFAAPGLTDSKKLSAGRRQALDVEIRERAVAWAL 94 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID NIH+ATL A+ AV L P L+DGR PE P A A++ GD Sbjct: 95 GRAEAAEIDALNIHRATLLAMQRAVAALSQAPDHLLVDGRFTPEG-PWSAEAIVGGDGSV 153 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AAS+IAKV RD M H++YPDYGFD H GYPTA H+ + GP HR +F P Sbjct: 154 AAISAASVIAKVARDAEMTALHERYPDYGFDRHAGYPTAYHRDALARLGPCVEHRRSFGP 213 Query: 204 L 204 + Sbjct: 214 V 214 >gi|217076334|ref|YP_002334050.1| ribonuclease HII [Thermosipho africanus TCF52B] gi|226736825|sp|B7IF45|RNH2_THEAB RecName: Full=Ribonuclease HII; Short=RNase HII gi|217036187|gb|ACJ74709.1| ribonuclease HII [Thermosipho africanus TCF52B] Length = 220 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 80/186 (43%), Positives = 118/186 (63%), Gaps = 6/186 (3%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 VAG+DE GRG L GPVV AA+IL N G++DSKK++ +KRE+L+ +I + +I Sbjct: 1 MIVAGVDEAGRGPLFGPVVAAAVIL--NEEIDGLDDSKKLTSRKREKLFLEIIKKSYFAI 58 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S A+ IDK NI AT A+ A+E L ++ A +DG+++ P + ++KGDS Sbjct: 59 SIATADEIDKFNILHATEIAMDRALERLRKKINFDIAFVDGKNLNLKFPFK--CIVKGDS 116 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + I+AASI+AKV RDR++ KK+ Y + H GYPT H ++IKE G + +HRLT+ Sbjct: 117 LVKEISAASILAKVVRDRIIVSYAKKFSSYMLEKHKGYPTQLHLKLIKEHGLTPLHRLTY 176 Query: 202 RPLRNL 207 +P+ L Sbjct: 177 KPVMEL 182 >gi|313819655|gb|EFS57369.1| ribonuclease HII [Propionibacterium acnes HL046PA2] Length = 213 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELY 72 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L+ Sbjct: 13 ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 72 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A+ +S D+ + +A + + AV L V P L DG + + L Sbjct: 73 NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 131 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 132 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 191 Query: 192 GPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 192 GPSRQHRMSYANVRR 206 >gi|313811659|gb|EFS49373.1| ribonuclease HII [Propionibacterium acnes HL083PA1] Length = 204 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELY 72 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L+ Sbjct: 4 ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 63 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A+ +S D+ + +A + + AV L V P L DG + + L Sbjct: 64 NVIMDKALAVSWVGVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFQV-DGLTV 122 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 123 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 182 Query: 192 GPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 183 GPSRQHRMSYANVRR 197 >gi|296116694|ref|ZP_06835304.1| ribonuclease HII [Gluconacetobacter hansenii ATCC 23769] gi|295976906|gb|EFG83674.1| ribonuclease HII [Gluconacetobacter hansenii ATCC 23769] Length = 235 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 80/205 (39%), Positives = 117/205 (57%), Gaps = 10/205 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISH 65 P + E + VAG+DEVGRG LAGPVV AA++ P+++ ++DSKK+ Sbjct: 1 MPDYTREKA----HGGRVAGVDEVGRGPLAGPVVAAAVMFMHGVPDDLASRLDDSKKLRP 56 Query: 66 KKREELYEKITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 R + ++ + S +I +++AS I++HNI +A A+ AV L P L+DG Sbjct: 57 AARLRAFAELRALPSVLIGVAAASVTEIERHNILRAAHIAMQRAVARLPQRPDLVLVDGN 116 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + P D C V+ GDS SLSIAAASI+AKV RDRLM ++P YG++ + GY TA Sbjct: 117 ATP-DFGCATQCVVGGDSKSLSIAAASIVAKVIRDRLMERLSVRWPGYGWERNAGYGTAA 175 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLS 208 H+ + G + HR F +R L+ Sbjct: 176 HRAALCAVGITPHHRAAFGTVRALA 200 >gi|299536766|ref|ZP_07050074.1| ribonuclease HII [Lysinibacillus fusiformis ZC1] gi|298727778|gb|EFI68345.1| ribonuclease HII [Lysinibacillus fusiformis ZC1] Length = 253 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 76/185 (41%), Positives = 113/185 (61%), Gaps = 4/185 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DE GRG LAGPVV AA+IL N G+NDSK++S KR + A+ Sbjct: 69 FIAGVDEAGRGPLAGPVVTAAVILPTNCEALVGLNDSKQLSKDKRNCFATLVKEHAVSYF 128 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I S Q ID+ NI++AT ++ +VE+L P L+D ++P + ++IKGD+ Sbjct: 129 IHFQSAQQIDELNIYEATKQSMKVSVESLSTKPDVVLVDAMTLP--ITIPQDSIIKGDAK 186 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SL+IAAASI+AK RD M +++P YGF H GY T +H + ++E GP+ HR +F Sbjct: 187 SLAIAAASILAKTARDEYMEQLDEEFPMYGFGQHAGYGTKQHLKALEEFGPTIHHRKSFE 246 Query: 203 PLRNL 207 P++++ Sbjct: 247 PIKSM 251 >gi|293400516|ref|ZP_06644661.1| ribonuclease HII [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305542|gb|EFE46786.1| ribonuclease HII [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 207 Score = 218 bits (555), Expect = 5e-55, Method: Composition-based stats. Identities = 75/198 (37%), Positives = 108/198 (54%), Gaps = 4/198 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E ++ + GIDE GRG +AGP+VVAA+ I DSKK+S KKR+ L+ Sbjct: 6 AYEIAWWKEGKKKIIGIDEAGRGPIAGPLVVAAVSFPVGFSHESIYDSKKLSEKKRKALF 65 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I A I S Q ID+ NI++AT A+ + N L D +P + Sbjct: 66 QEIIQLASEYHIKIVSPQIIDEQNIYRATQLAMLE-LSNSFHDADGVLTDAMPLP-NASL 123 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +++KGD S+SIAAASI+AKVTRD +M K+YP YGF H GYPT H + + Sbjct: 124 DVISLVKGDQKSVSIAAASILAKVTRDCIMCAYDKQYPQYGFAKHKGYPTKGHLEAMHTY 183 Query: 192 GP-SCIHRLTFRPLRNLS 208 G + I+R ++ P+ + Sbjct: 184 GVINDIYRKSYGPVAAMQ 201 >gi|314981831|gb|EFT25924.1| ribonuclease HII [Propionibacterium acnes HL110PA3] gi|315090696|gb|EFT62672.1| ribonuclease HII [Propionibacterium acnes HL110PA4] Length = 204 Score = 218 bits (555), Expect = 5e-55, Method: Composition-based stats. Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELY 72 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L+ Sbjct: 4 ERALTRAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 63 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A+ +S D+ + +A + + AV L V P L DG + + L Sbjct: 64 NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 122 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 123 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 182 Query: 192 GPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 183 GPSRQHRMSYANVRR 197 >gi|302380879|ref|ZP_07269341.1| ribonuclease HII [Finegoldia magna ACS-171-V-Col3] gi|302311257|gb|EFK93276.1| ribonuclease HII [Finegoldia magna ACS-171-V-Col3] Length = 207 Score = 218 bits (555), Expect = 5e-55, Method: Composition-based stats. Identities = 81/203 (39%), Positives = 111/203 (54%), Gaps = 19/203 (9%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREEL 71 E E + + GIDEVGRG LAGPVV AII+ N I G+ DSKK+S KKR + Sbjct: 8 EFEEEL-------ICGIDEVGRGPLAGPVVTCAIIMPKNCEIIEGVTDSKKLSEKKRIKF 60 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALIDGRS 124 + I + A+ S+ ID+ NI +AT ++ AVE+L+ + P +ID Sbjct: 61 KDMILNQALAYSVDFVDQGVIDEINIKQATRLSMKKAVESLKTKDNKFIKPDLIVIDAEE 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 I D+ + + +KGD I+ ASI+AKV RD M+ YP YGF+ H GY T H Sbjct: 121 IDTDI--KQMSFVKGDEKLYPISCASIVAKVIRDEYMKEMAVIYPQYGFEKHKGYGTKLH 178 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 +++I E G +HR TF LR L Sbjct: 179 REMILEYGECPLHRKTF--LRKL 199 >gi|229491398|ref|ZP_04385222.1| ribonuclease HII [Rhodococcus erythropolis SK121] gi|229321683|gb|EEN87480.1| ribonuclease HII [Rhodococcus erythropolis SK121] Length = 226 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 76/194 (39%), Positives = 110/194 (56%), Gaps = 4/194 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREEL 71 +E+ + + PVAG+DE GRGA AGP+V+AA +L P ++DSKK++ + REEL Sbjct: 19 MESALARTGLGPVAGVDEAGRGACAGPLVIAACVLAPKPQAALARLDDSKKLTERAREEL 78 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ S+ S +D+ IH A ++ + AV +L + P L DG +P L Sbjct: 79 FPAIKRLALAWSVISVPAAEVDQIGIHVANIEGMRRAVASLDLEPGYVLTDGFRVP-GLT 137 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD + IAAAS++AKVTRDR+M +P YGF H GY T H + E Sbjct: 138 APSLPVIGGDGAAACIAAASVLAKVTRDRVMTEMDDTHPGYGFAIHKGYSTPLHMDALDE 197 Query: 191 KGPSCIHRLTFRPL 204 GP HR+T+ + Sbjct: 198 LGPCPEHRMTYANV 211 >gi|218961310|ref|YP_001741085.1| ribonuclease HII [Candidatus Cloacamonas acidaminovorans] gi|167729967|emb|CAO80879.1| ribonuclease HII [Candidatus Cloacamonas acidaminovorans] Length = 204 Score = 217 bits (554), Expect = 6e-55, Method: Composition-based stats. Identities = 97/177 (54%), Positives = 118/177 (66%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AGIDE GRGALAGPVV AA+IL+ N + GINDSK ++ KKREELY +I SAI SI Sbjct: 21 AGIDEAGRGALAGPVVTAAVILNYNTLIEGINDSKLLTPKKREELYWQIVESAIDYSIVE 80 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S YID++NI +ATL A L+ PR LIDGR I +L A A+IKGD + S Sbjct: 81 ISPAYIDRYNILRATLLGFKKAFFQLKSKPRYCLIDGRDIHSELKPYAKAIIKGDQLYAS 140 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AKV RD+LM YP+YGF S+ GY TA H ++I G S IHR +F+ Sbjct: 141 IAAASILAKVHRDKLMLAYDDIYPEYGFASNKGYGTAYHAKMICSYGLSPIHRKSFK 197 >gi|50842913|ref|YP_056140.1| ribonuclease HII [Propionibacterium acnes KPA171202] gi|81611490|sp|Q6A7T3|RNH2_PROAC RecName: Full=Ribonuclease HII; Short=RNase HII gi|50840515|gb|AAT83182.1| ribonuclease HII [Propionibacterium acnes KPA171202] gi|313763669|gb|EFS35033.1| ribonuclease HII [Propionibacterium acnes HL013PA1] gi|313794063|gb|EFS42087.1| ribonuclease HII [Propionibacterium acnes HL110PA1] gi|313801450|gb|EFS42701.1| ribonuclease HII [Propionibacterium acnes HL110PA2] gi|313807870|gb|EFS46351.1| ribonuclease HII [Propionibacterium acnes HL087PA2] gi|313813532|gb|EFS51246.1| ribonuclease HII [Propionibacterium acnes HL025PA1] gi|313816846|gb|EFS54560.1| ribonuclease HII [Propionibacterium acnes HL059PA1] gi|313822239|gb|EFS59953.1| ribonuclease HII [Propionibacterium acnes HL036PA1] gi|313823528|gb|EFS61242.1| ribonuclease HII [Propionibacterium acnes HL036PA2] gi|313825855|gb|EFS63569.1| ribonuclease HII [Propionibacterium acnes HL063PA1] gi|313829535|gb|EFS67249.1| ribonuclease HII [Propionibacterium acnes HL063PA2] gi|313839830|gb|EFS77544.1| ribonuclease HII [Propionibacterium acnes HL086PA1] gi|314914671|gb|EFS78502.1| ribonuclease HII [Propionibacterium acnes HL005PA4] gi|314919216|gb|EFS83047.1| ribonuclease HII [Propionibacterium acnes HL050PA1] gi|314920874|gb|EFS84705.1| ribonuclease HII [Propionibacterium acnes HL050PA3] gi|314924571|gb|EFS88402.1| ribonuclease HII [Propionibacterium acnes HL036PA3] gi|314930442|gb|EFS94273.1| ribonuclease HII [Propionibacterium acnes HL067PA1] gi|314954505|gb|EFS98911.1| ribonuclease HII [Propionibacterium acnes HL027PA1] gi|314957375|gb|EFT01478.1| ribonuclease HII [Propionibacterium acnes HL002PA1] gi|314962003|gb|EFT06104.1| ribonuclease HII [Propionibacterium acnes HL002PA2] gi|314963583|gb|EFT07683.1| ribonuclease HII [Propionibacterium acnes HL082PA1] gi|314968585|gb|EFT12683.1| ribonuclease HII [Propionibacterium acnes HL037PA1] gi|314978796|gb|EFT22890.1| ribonuclease HII [Propionibacterium acnes HL072PA2] gi|314986438|gb|EFT30530.1| ribonuclease HII [Propionibacterium acnes HL005PA2] gi|314990798|gb|EFT34889.1| ribonuclease HII [Propionibacterium acnes HL005PA3] gi|315079437|gb|EFT51430.1| ribonuclease HII [Propionibacterium acnes HL053PA2] gi|315083537|gb|EFT55513.1| ribonuclease HII [Propionibacterium acnes HL027PA2] gi|315087217|gb|EFT59193.1| ribonuclease HII [Propionibacterium acnes HL002PA3] gi|315089391|gb|EFT61367.1| ribonuclease HII [Propionibacterium acnes HL072PA1] gi|315099296|gb|EFT71272.1| ribonuclease HII [Propionibacterium acnes HL059PA2] gi|315100529|gb|EFT72505.1| ribonuclease HII [Propionibacterium acnes HL046PA1] gi|315106699|gb|EFT78675.1| ribonuclease HII [Propionibacterium acnes HL030PA1] gi|315108924|gb|EFT80900.1| ribonuclease HII [Propionibacterium acnes HL030PA2] gi|327329811|gb|EGE71567.1| ribonuclease HII [Propionibacterium acnes HL096PA3] gi|327334326|gb|EGE76040.1| ribonuclease HII [Propionibacterium acnes HL097PA1] gi|327446256|gb|EGE92910.1| ribonuclease HII [Propionibacterium acnes HL013PA2] gi|327451918|gb|EGE98572.1| ribonuclease HII [Propionibacterium acnes HL092PA1] gi|327455047|gb|EGF01702.1| ribonuclease HII [Propionibacterium acnes HL087PA3] gi|327457665|gb|EGF04320.1| ribonuclease HII [Propionibacterium acnes HL083PA2] gi|328755121|gb|EGF68737.1| ribonuclease HII [Propionibacterium acnes HL087PA1] gi|328758100|gb|EGF71716.1| ribonuclease HII [Propionibacterium acnes HL025PA2] gi|332675850|gb|AEE72666.1| ribonuclease HII [Propionibacterium acnes 266] Length = 204 Score = 217 bits (554), Expect = 6e-55, Method: Composition-based stats. Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELY 72 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L+ Sbjct: 4 ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 63 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A+ +S D+ + +A + + AV L V P L DG + + L Sbjct: 64 NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 122 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 123 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 182 Query: 192 GPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 183 GPSRQHRMSYANVRR 197 >gi|313831400|gb|EFS69114.1| ribonuclease HII [Propionibacterium acnes HL007PA1] gi|313835012|gb|EFS72726.1| ribonuclease HII [Propionibacterium acnes HL056PA1] gi|314974275|gb|EFT18371.1| ribonuclease HII [Propionibacterium acnes HL053PA1] gi|314976720|gb|EFT20815.1| ribonuclease HII [Propionibacterium acnes HL045PA1] gi|314984422|gb|EFT28514.1| ribonuclease HII [Propionibacterium acnes HL005PA1] gi|315081336|gb|EFT53312.1| ribonuclease HII [Propionibacterium acnes HL078PA1] gi|315095246|gb|EFT67222.1| ribonuclease HII [Propionibacterium acnes HL038PA1] gi|327328324|gb|EGE70086.1| ribonuclease HII [Propionibacterium acnes HL096PA2] gi|327444349|gb|EGE91003.1| ribonuclease HII [Propionibacterium acnes HL043PA2] gi|327445013|gb|EGE91667.1| ribonuclease HII [Propionibacterium acnes HL043PA1] gi|328760136|gb|EGF73714.1| ribonuclease HII [Propionibacterium acnes HL099PA1] Length = 204 Score = 217 bits (554), Expect = 6e-55, Method: Composition-based stats. Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELY 72 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L+ Sbjct: 4 ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 63 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A+ +S D+ + +A + + AV L V P L DG + + L Sbjct: 64 NVIMDKALAVSWVGVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 122 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 123 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 182 Query: 192 GPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 183 GPSRQHRMSYANVRR 197 >gi|257066780|ref|YP_003153036.1| Ribonuclease H [Anaerococcus prevotii DSM 20548] gi|256798660|gb|ACV29315.1| Ribonuclease H [Anaerococcus prevotii DSM 20548] Length = 209 Score = 217 bits (554), Expect = 7e-55, Method: Composition-based stats. Identities = 76/182 (41%), Positives = 108/182 (59%), Gaps = 3/182 (1%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 ++ +AGIDEVGRG LAGPVV A+I+ ++ G+ DSKK++ KK L EKI AI Sbjct: 16 EDYELIAGIDEVGRGPLAGPVVTCAVIMKRDSNIGGVTDSKKLTRKKMLSLKEKILDDAI 75 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 + A+ ID+ NI AT A+ A+ L++ P LID I D+P ++KG Sbjct: 76 DFAYGYANPSLIDELNIKNATHKAMEDALNKLKIRPEIVLIDAERINTDIP--QMNIVKG 133 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D I+ ASI+AKV RD +M K YP Y F++++GY T KH + +++ G + IHR Sbjct: 134 DLNEYVISCASILAKVRRDDIMINFSKIYPGYSFETNMGYGTKKHYEGLEKYGETPIHRQ 193 Query: 200 TF 201 TF Sbjct: 194 TF 195 >gi|327404332|ref|YP_004345170.1| RNase HII [Fluviicola taffensis DSM 16823] gi|327319840|gb|AEA44332.1| RNase HII [Fluviicola taffensis DSM 16823] Length = 202 Score = 217 bits (554), Expect = 7e-55, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 91/179 (50%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPVV A++IL +NDSK++S K R L I A+ S+ Sbjct: 14 AGCDEAGRGCLAGPVVCASVILPKGFSHPLLNDSKQLSEKSRNLLRPIIEQEALAFSVQF 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 I NI KA+L ++ A L++ P LIDG + A IKGD S Sbjct: 74 LQPDEIVVLNILKASLTGMHRAAMALKIRPELLLIDGNKTLLSNEIPSIAFIKGDGKYKS 133 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M H+ + Y + + GYPT H++ I+ G HR F L Sbjct: 134 IAAASILAKTYRDEYMEKLHEDFTHYDWKINKGYPTKAHRKAIEIHGACIHHRPGFNLL 192 >gi|169827106|ref|YP_001697264.1| ribonuclease HII [Lysinibacillus sphaericus C3-41] gi|168991594|gb|ACA39134.1| Ribonuclease HII [Lysinibacillus sphaericus C3-41] Length = 253 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 80/185 (43%), Positives = 114/185 (61%), Gaps = 4/185 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DE GRG LAGPVV AA+IL N+ G+NDSK++S KR I AI Sbjct: 69 LIAGVDEAGRGPLAGPVVTAAVILPTNSEALVGLNDSKQLSKDKRNAFAALIKKHAISYF 128 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I S Q ID+ NI++AT ++ +VE+L P L+D ++P +P ++IKGD+ Sbjct: 129 IHFQSAQQIDELNIYEATKQSMKASVESLSRKPDYVLVDAMTLPMAIP--QDSIIKGDAK 186 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SL+IAAASI+AK RD M K +P YGF H GY T +H + ++E GP+ HR +F Sbjct: 187 SLAIAAASILAKTARDDYMEQLDKDFPMYGFAQHAGYGTKQHLKALEEYGPTIHHRKSFE 246 Query: 203 PLRNL 207 P++++ Sbjct: 247 PIKSM 251 >gi|221633032|ref|YP_002522257.1| ribonuclease HII [Thermomicrobium roseum DSM 5159] gi|221155904|gb|ACM05031.1| ribonuclease HII [Thermomicrobium roseum DSM 5159] Length = 219 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 80/196 (40%), Positives = 117/196 (59%), Gaps = 3/196 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHK 66 ERP FELE + + VAG+DEVGRGALAGPVV AA I +P+ +P + DSK+++ Sbjct: 16 ERPTFELEQALWQAGNRWVAGVDEVGRGALAGPVVAAACIFEPSTELPDQLRDSKRLTDP 75 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R L + + ++ +I +ASH+ +D+ I +AT A+ A++ L + L DG + Sbjct: 76 QRRALADWVRQYSLRWAIGAASHREVDRLGIVRATALAMLRALQRLGPV-DHVLYDGLPL 134 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 E AV+ GD SIAAASI+AKV RD LM +YP YG++ + GY T H+ Sbjct: 135 TEFERLPGTAVVHGDMRCASIAAASILAKVIRDDLMARLAVRYPGYGWEENAGYGTPSHR 194 Query: 186 QVIKEKGPSCIHRLTF 201 + I+E G + HR +F Sbjct: 195 RAIRELGSTPFHRRSF 210 >gi|312112873|ref|YP_004010469.1| ribonuclease H [Rhodomicrobium vannielii ATCC 17100] gi|311218002|gb|ADP69370.1| Ribonuclease H [Rhodomicrobium vannielii ATCC 17100] Length = 239 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 82/197 (41%), Positives = 121/197 (61%), Gaps = 2/197 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 ++ + ++ K +AG+DE GRG AGPVV AA+I P G+NDSKK++ + Sbjct: 35 QKLTRRPDLALQRKYGGLIAGVDEAGRGPWAGPVVAAAVIFH-GKPPAGVNDSKKLAPAE 93 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 RE L+ KI ++A + I A + ID+ NI+ AT A+ A+ L P +ALIDG P+ Sbjct: 94 RENLFSKIFAAAHVGIGIAPVELIDEINIYHATHRAMCDAISALAFAPNAALIDGNRCPK 153 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L + A++ GD++S+SIAAASIIAKVTRDR+M +P Y ++ + GY TA H Sbjct: 154 -LDIPSEALVSGDALSISIAAASIIAKVTRDRMMTELASTFPPYRWERNKGYGTADHASA 212 Query: 188 IKEKGPSCIHRLTFRPL 204 ++E G + HR +FRP+ Sbjct: 213 LREYGVTLHHRRSFRPV 229 >gi|229824250|ref|ZP_04450319.1| hypothetical protein GCWU000282_01554 [Catonella morbi ATCC 51271] gi|229786604|gb|EEP22718.1| hypothetical protein GCWU000282_01554 [Catonella morbi ATCC 51271] Length = 262 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 83/202 (41%), Positives = 121/202 (59%), Gaps = 5/202 (2%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHK 66 + E E +AG+DEVGRG LAGPVVVAA++L + G+ DSK++SH Sbjct: 57 QKRLIHEMAAYEAGYQVIAGLDEVGRGPLAGPVVVAAVVLPRDCQHLLVGVTDSKQLSHA 116 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KR E +I A+ + I + ID+ NI++AT + AVE L+V P L+D +I Sbjct: 117 KRLEFARQIREVALDLKIVAIPPAIIDRENIYQATRQGMKAAVEALRVKPDYLLLDAITI 176 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 DLP +++KGD SLSIAAASI+AKV RD LM + YP++GF+ ++GY T +H Sbjct: 177 DSDLP--QESLVKGDQRSLSIAAASIVAKVYRDELMVQYSQTYPEFGFERNMGYGTKEHL 234 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 + G + IHR +F P++++ Sbjct: 235 VALDRVGYTPIHRRSFEPVKSM 256 >gi|294675016|ref|YP_003575632.1| ribonuclease HII [Prevotella ruminicola 23] gi|294473926|gb|ADE83315.1| ribonuclease HII [Prevotella ruminicola 23] Length = 209 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 71/185 (38%), Positives = 105/185 (56%), Gaps = 7/185 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL +NDSK++S KKR +L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPEGYQNELLNDSKQLSEKKRYQLREMIERDAVAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE------DLPCQAFAVIKG 139 + + IDK NI A++ A++ A++ L+V P + ++DG ++KG Sbjct: 73 VTPEEIDKINILNASILAMHRALDQLKVRPEAIIVDGNRFKPYKEPANGETLPHTTIVKG 132 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D L+IAAASI+AK RD M ++YP Y + S+ GYPT KH++ IK+ G + HR Sbjct: 133 DGKYLAIAAASILAKTYRDDYMNQLAEEYPQYDWRSNKGYPTKKHREAIKQHGITPYHRK 192 Query: 200 TFRPL 204 ++ L Sbjct: 193 SYNLL 197 >gi|306845020|ref|ZP_07477601.1| ribonuclease HII [Brucella sp. BO1] gi|306274652|gb|EFM56441.1| ribonuclease HII [Brucella sp. BO1] Length = 194 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 93/188 (49%), Positives = 131/188 (69%), Gaps = 2/188 (1%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 ++ + +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ +RE LYE I + A Sbjct: 2 KRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTAARREALYEIILAKA 61 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 I +S++S S + ID +I KA L+A+ AV L + P AL+DGR +P LPC A++K Sbjct: 62 ITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRDVPPGLPCPGSALVK 121 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC-IH 197 GD S+SIAAASI+AKVTRDR+M A +P YG + H GY T KH+ I+ +GP +H Sbjct: 122 GDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYGTQKHRAAIESEGPVPGLH 181 Query: 198 RLTFRPLR 205 R TF P++ Sbjct: 182 RYTFAPIK 189 >gi|218288272|ref|ZP_03492571.1| Ribonuclease H [Alicyclobacillus acidocaldarius LAA1] gi|218241631|gb|EED08804.1| Ribonuclease H [Alicyclobacillus acidocaldarius LAA1] Length = 207 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 76/198 (38%), Positives = 111/198 (56%), Gaps = 8/198 (4%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHK 66 + L+ + AG+DEVGRG +AGPVV A+++L + DSK++ Sbjct: 7 RYRLDLAL--SGGCRTAGVDEVGRGCIAGPVVAASVVLPLELETYEELKDVMDSKQLKSD 64 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 RE L ++I + A+ + I AS + ID+ NI +AT A+ +++ L + AL+DG Sbjct: 65 VRERLADRIRAKALAVGIGMASPEEIDRLNILQATQLAMKRSLDALDIPVDLALVDGNRA 124 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 V+ GD+ SL IAAAS+IAKV RDRLM + +P YGF HVGY T H Sbjct: 125 FRHR-VPVLPVVDGDARSLPIAAASVIAKVFRDRLMAKLDEGFPGYGFSEHVGYGTRAHL 183 Query: 186 QVIKEKGPSCIHRLTFRP 203 + ++ GPS +HRL+F P Sbjct: 184 EALRRLGPSVVHRLSFAP 201 >gi|78185903|ref|YP_373946.1| ribonuclease H [Chlorobium luteolum DSM 273] gi|97189134|sp|Q3B6X8|RNH2_PELLD RecName: Full=Ribonuclease HII; Short=RNase HII gi|78165805|gb|ABB22903.1| RNase HII [Chlorobium luteolum DSM 273] Length = 208 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 79/200 (39%), Positives = 113/200 (56%), Gaps = 8/200 (4%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-----INDSKKISHKKRE 69 E ++ V GIDE GRG LAGPVV AA++ P +NDSKK++ R Sbjct: 9 EYLLWND-FLRVCGIDEAGRGPLAGPVVAAAVVFPRWFSPDEGILRRLNDSKKLTPSLRR 67 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 EL I A ++ + H+ ID+ NI +AT+ A+ A E+L P LIDG + Sbjct: 68 ELAPAIREEAECWAVEAVDHETIDRINILRATMLAMNRAAESLPRQPDLLLIDGNRFTPN 127 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 +P ++ GD++ SIAAAS++AK RDR+M ++YP+YGF+ + GY T +H + I Sbjct: 128 IPVPYQTIVGGDALVFSIAAASVLAKTERDRMMEEYAERYPEYGFERNAGYGTREHVEAI 187 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 + G S IHR +FR LR L Sbjct: 188 RRHGRSPIHRTSFR-LRQLG 206 >gi|289449974|ref|YP_003475451.1| ribonuclease HII [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184521|gb|ADC90946.1| ribonuclease HII [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 228 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 80/191 (41%), Positives = 111/191 (58%), Gaps = 2/191 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E ++ +AG DE GRG +AGP+ AA+++DP +G+NDSKK+S K+REEL Sbjct: 35 LKFEEQAAQQGFTCIAGTDEAGRGPVAGPIFAAAVVIDPRRPLYGVNDSKKLSPKRREEL 94 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A SI+ + + ID+ I A + AV + + L+D + +D Sbjct: 95 FNIICERAAAYSIAMVTAKVIDQIGIGPANDLVLKQAVGRMSIKADYVLVDYFKL-KDYA 153 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+ KGDS+S SIAAASI+AKV+RDR M K YP YGF +H GY TA H+Q IKE Sbjct: 154 IPYLAITKGDSLSASIAAASILAKVSRDRYMVQQDKIYPQYGFAAHKGYGTAAHRQAIKE 213 Query: 191 KGPSCIHRLTF 201 G HR +F Sbjct: 214 YGLCPEHRRSF 224 >gi|119717477|ref|YP_924442.1| ribonuclease HII [Nocardioides sp. JS614] gi|189043632|sp|A1SLS0|RNH2_NOCSJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|119538138|gb|ABL82755.1| Ribonuclease H [Nocardioides sp. JS614] Length = 240 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 76/198 (38%), Positives = 108/198 (54%), Gaps = 4/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69 + E +R + P+AG+DE GRGA AGP+V A IL P I G+ DSK ++ + RE Sbjct: 17 YGYERALRRHGIEPIAGVDEAGRGACAGPLVAGAAILPPGKAGIVPGLADSKLLTERARE 76 Query: 70 ELYEKITSSAIISISSAS-HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 YE+I A+ H+ D+ +H A ++A+ AV L + P L DG + + Sbjct: 77 RCYEQIVRRAVSWSVVVVSHEECDRLGMHVANVEALRRAVALLDLPPAYVLTDGFPV-DG 135 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L AV KGD ++ I+AAS++AKVTRDR+M +P Y F +H GY T H + Sbjct: 136 LGVPGLAVWKGDRVAACISAASVLAKVTRDRIMTELDASWPAYDFKTHKGYITEVHSAAL 195 Query: 189 KEKGPSCIHRLTFRPLRN 206 GPS IHR+ F +R Sbjct: 196 TAHGPSPIHRMRFVNVRR 213 >gi|325474109|gb|EGC77297.1| ribonuclease HII [Treponema denticola F0402] Length = 198 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 77/198 (38%), Positives = 108/198 (54%), Gaps = 17/198 (8%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS--SAIISI 83 + GIDE GRG LAGPV AA+IL + DSKK++ KKREE+ + I + + + SI Sbjct: 2 LCGIDEAGRGPLAGPVTAAAVILPSRFDFSILKDSKKLTEKKREEVRKTIYADPNVLWSI 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENL-------------QVIPRSALIDGRSIPEDLP 130 AS+ ID+ NI +AT A+ A E L + I ++DG IP Sbjct: 62 GWASNYEIDEINILQATFLAMERAYEGLYLKLQEFCKLNNDKFIEPDIIVDGNFIPNIKN 121 Query: 131 CQAF-AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C + A++K D + AASI+AK RDR+M YP+YG++ H GY T KH + I+ Sbjct: 122 CSSIKALVKADDSVYEVMAASILAKTARDRMMIRYSWLYPEYGYEKHKGYGTKKHIEAIR 181 Query: 190 EKGPSCIHRLTFRPLRNL 207 G S I R +F ++NL Sbjct: 182 FNGYSPIQRRSF-FVKNL 198 >gi|78189946|ref|YP_380284.1| ribonuclease HII [Chlorobium chlorochromatii CaD3] gi|97182370|sp|Q3AP34|RNH2_CHLCH RecName: Full=Ribonuclease HII; Short=RNase HII gi|78172145|gb|ABB29241.1| RNase HII [Chlorobium chlorochromatii CaD3] Length = 206 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 85/201 (42%), Positives = 119/201 (59%), Gaps = 8/201 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-----INDSKKISHKKR 68 E + ++ + GIDEVGRG LAGPVV AA++ P +NDSKK+S K+R Sbjct: 5 YEEPLW-QHYEFICGIDEVGRGPLAGPVVAAAVVFPRWFQPTEALLTLLNDSKKLSAKER 63 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E L I + A+ +++ H ID+ NI +AT+ A+ +AV+ L +IP L+DG Sbjct: 64 ESLVPAIKAQALHWALAEVQHNVIDEVNILQATMLAMNNAVKALPIIPSLLLVDGNRFTT 123 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 DL ++KGDS SIAAAS++AKV RD LM + YP YGF+ H GYPT+ H + Sbjct: 124 DLAIPYKTIVKGDSHVFSIAAASVLAKVHRDALMCVYATHYPHYGFERHAGYPTSAHIEA 183 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 I++ G IHR +F+ LR L Sbjct: 184 IRQHGRCPIHRQSFK-LRQLG 203 >gi|163796461|ref|ZP_02190421.1| Ribonuclease HII [alpha proteobacterium BAL199] gi|159178311|gb|EDP62855.1| Ribonuclease HII [alpha proteobacterium BAL199] Length = 222 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 80/213 (37%), Positives = 117/213 (54%), Gaps = 10/213 (4%) Query: 2 FCNSIPE-RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFG 56 F SIP+ RP +LE V G+DEVGRG AGPVV A +LD P ++ Sbjct: 3 FMPSIPKTRPTDDLERAAGALEGALVIGVDEVGRGPWAGPVVAGAAVLDLVAMPTHVAAL 62 Query: 57 INDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL----Q 112 I DSK +S +R + T A I++ A + ID NI +A+L A+ AV+ L Sbjct: 63 IADSKALSAPRRADALAAFTPYAAIALGRAEVEEIDAVNILQASLLAMRRAVDALLATLA 122 Query: 113 VIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 P L+DG +P P + A++KGD+ LSI+ A+I AK+ RD M +++P YG Sbjct: 123 GPPALILVDGNRLPH-WPHPSRAIVKGDASCLSISVAAIAAKLARDAEMAALAEQHPGYG 181 Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 ++ + GY T +HQ ++ GP+ HR +F P+R Sbjct: 182 WERNAGYGTPEHQVALRRLGPTIHHRRSFAPVR 214 >gi|169630303|ref|YP_001703952.1| ribonuclease HII [Mycobacterium abscessus ATCC 19977] gi|238688907|sp|B1MDH9|RNH2_MYCA9 RecName: Full=Ribonuclease HII; Short=RNase HII gi|169242270|emb|CAM63298.1| Ribonuclease HII (RNase HII) [Mycobacterium abscessus] Length = 234 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 79/196 (40%), Positives = 111/196 (56%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREEL 71 LE + + PVAG+DE GRGA AGP+V+AA +L + +NDSKK++ K RE L Sbjct: 20 LELTLDRVGLGPVAGVDEAGRGACAGPLVIAACVLGSNQRKSLAALNDSKKLTEKMRETL 79 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A + S +D+ +H A ++ + AV L V P L DG +P LP Sbjct: 80 FPLICRYAEAYHVVSVPADEVDRIGVHVANIEGMRRAVAGLGVKPGYVLTDGFRVP-GLP 138 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+ + IAAAS++AKV+RDR+M +P YGF H GY TA H + ++ Sbjct: 139 VPSLPVIGGDASAACIAAASVLAKVSRDRVMVNMDSDHPGYGFAVHKGYSTAVHTEALRR 198 Query: 191 KGPSCIHRLTFRPLRN 206 GPS HR +F +RN Sbjct: 199 LGPSAQHRQSFVNVRN 214 >gi|75676782|ref|YP_319203.1| ribonuclease HII/HIII [Nitrobacter winogradskyi Nb-255] gi|97189098|sp|Q3SPE0|RNH2_NITWN RecName: Full=Ribonuclease HII; Short=RNase HII gi|74421652|gb|ABA05851.1| RNase HII [Nitrobacter winogradskyi Nb-255] Length = 258 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 95/204 (46%), Positives = 130/204 (63%), Gaps = 1/204 (0%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 + +I P F E + E +WPVAG DEVGRG LAGPVV AA++LDPN+IP GI+DS Sbjct: 25 LKAGTINVAPSFMRERDLMECGVWPVAGCDEVGRGPLAGPVVAAAVVLDPNHIPKGIDDS 84 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K+++ +REEL+E+I ++A +++ A + ID+ NI +A+L A+ AV L P+ + Sbjct: 85 KRLTAARREELFEEIVATASFAVACAPIERIDRDNILRASLWALARAVHALPDTPKHVFV 144 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DGR D+ C VI GD + LSIAAASI+AKVTRDRLM + P YGF++H GY Sbjct: 145 DGRD-RIDIACACEPVIGGDGLVLSIAAASIVAKVTRDRLMCKLARDCPGYGFETHKGYA 203 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPL 204 H + + GPS HR F P+ Sbjct: 204 VPGHLEALGRLGPSSHHRSFFAPV 227 >gi|328949830|ref|YP_004367165.1| Ribonuclease H [Marinithermus hydrothermalis DSM 14884] gi|328450154|gb|AEB11055.1| Ribonuclease H [Marinithermus hydrothermalis DSM 14884] Length = 199 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 78/192 (40%), Positives = 107/192 (55%), Gaps = 6/192 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 LE + + V G+DE GRGALAGP+VV A+IL P PF DSK K RE L Sbjct: 4 LELPLWRDGL-VVCGVDEAGRGALAGPIVVGAVILPPGPHPF--RDSKACPPKTREALLA 60 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 ++ +A+ ++ A +D + KAT A + A+ L+ P + D + DLP Sbjct: 61 RLERTALAYAVGVAEAGEVDALGVLKATHLAAHRALAALEARPDHLITDYLFLETDLPL- 119 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 AV K + S+++AAASI+AKVTRDR+MR + YP YGF H GY T H + + G Sbjct: 120 -TAVPKAEEKSVTVAAASILAKVTRDRIMRELDRAYPGYGFAQHKGYGTRAHLEALARLG 178 Query: 193 PSCIHRLTFRPL 204 PS +HR F P+ Sbjct: 179 PSPVHRRRFAPV 190 >gi|126654070|ref|ZP_01725896.1| ribonuclease HII [Bacillus sp. B14905] gi|126589450|gb|EAZ83597.1| ribonuclease HII [Bacillus sp. B14905] Length = 253 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 79/185 (42%), Positives = 113/185 (61%), Gaps = 4/185 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DE GRG LAGPVV AA+IL N+ G+NDSK++S KR I AI Sbjct: 69 LIAGVDEAGRGPLAGPVVTAAVILPTNSEALVGLNDSKQLSKDKRNAFAALIKEHAISYF 128 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I Q ID+ NI++AT ++ +VE+L P L+D ++P +P ++IKGD+ Sbjct: 129 IHFQPAQQIDELNIYEATKQSMKASVESLSRKPDYVLVDAMTLPMAIP--QDSIIKGDAK 186 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SL+IAAASI+AK RD M K +P YGF H GY T +H + ++E GP+ HR +F Sbjct: 187 SLAIAAASILAKTARDDYMEQLDKDFPMYGFAQHAGYGTKQHLKALEEYGPTIHHRKSFE 246 Query: 203 PLRNL 207 P++++ Sbjct: 247 PVKSM 251 >gi|327441071|dbj|BAK17436.1| ribonuclease HII [Solibacillus silvestris StLB046] Length = 257 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 77/198 (38%), Positives = 118/198 (59%), Gaps = 4/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREE 70 + +A +AG DE GRG LAGPVV AA+IL + G+NDSK++S +KR + Sbjct: 57 LQFDASYLPYEHAYIAGTDEAGRGPLAGPVVTAAVILPNHCQELLGVNDSKQLSKEKRNQ 116 Query: 71 LYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 E+I A+ ++ S + ID+ NI++AT ++ ++E L+V P L D ++ + Sbjct: 117 FAERIKKHALYYAVHFQSAEEIDRLNIYEATRQSMLKSIEALEVTPNYILADAMTLSTSI 176 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P ++IKGD+ SL+IAAASI+AK RD M ++P YGF H GY T +H + I Sbjct: 177 P--QASIIKGDARSLAIAAASILAKTARDDYMEKLDLEFPQYGFAQHAGYGTKQHLEAIA 234 Query: 190 EKGPSCIHRLTFRPLRNL 207 + GP+ HR TF P++++ Sbjct: 235 QYGPTIHHRKTFEPIKSI 252 >gi|284992383|ref|YP_003410937.1| Ribonuclease H [Geodermatophilus obscurus DSM 43160] gi|284065628|gb|ADB76566.1| Ribonuclease H [Geodermatophilus obscurus DSM 43160] Length = 257 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 74/205 (36%), Positives = 109/205 (53%), Gaps = 6/205 (2%) Query: 5 SIPERPH--FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDS 60 S+ +RP +++E + + VAG DE GRGA AGP+V AA +L G+ DS Sbjct: 20 SVDDRPDALWDMERSLHRRGFPAVAGADEAGRGACAGPLVAAACVLPAGRRGRVPGLADS 79 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 K ++ RE +YE++ A+ S+ +D +H ++A+ AV L L Sbjct: 80 KLLTVAARERVYEEVVDRAVAWSVVLLPVADLDARGMHVTNIEALRRAVWALDPGADYVL 139 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 DG +P L AV KGD I+ +AAAS++AKVTRDR+M H+++P+Y F H GY Sbjct: 140 TDGFPVP-GLARPTLAVWKGDRIAACVAAASVLAKVTRDRIMLDLHERWPEYDFAVHKGY 198 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPL 204 TA H ++ GP HR F + Sbjct: 199 STAAHDAALQRYGPCPEHRKRFVNV 223 >gi|304383864|ref|ZP_07366321.1| ribonuclease HII [Prevotella marshii DSM 16973] gi|304334942|gb|EFM01215.1| ribonuclease HII [Prevotella marshii DSM 16973] Length = 198 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 75/177 (42%), Positives = 110/177 (62%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG+LAG V AA+IL P+ INDSKK++ ++R L E I + AI +I Sbjct: 13 AGCDEAGRGSLAGSVYAAAVILPPDYRNDAINDSKKLTPRQRYALREVIQTDAIAWAIGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A+ + ID+ NI A++ A++ A++ L + P + +IDG ++KGD+ LS Sbjct: 73 ATAEEIDRINILNASILAMHRALDGLHLRPEAVIIDGNRFQPYRNLPCQTIVKGDAKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAA+I+AK RD M ++YP Y + S+ GYPT +H+Q IK+ G S +HR +FR Sbjct: 133 IAAAAILAKTYRDDYMDALAEEYPVYEWHSNKGYPTKRHRQAIKDYGASPLHRQSFR 189 >gi|325282798|ref|YP_004255339.1| Ribonuclease H [Deinococcus proteolyticus MRP] gi|324314607|gb|ADY25722.1| Ribonuclease H [Deinococcus proteolyticus MRP] Length = 215 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 73/196 (37%), Positives = 108/196 (55%), Gaps = 3/196 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + LE + + VAG+DE GRGA AGPV VAA+IL DSK ++ ++RE Sbjct: 11 PDWSLERQHWVRGYFRVAGVDEAGRGAWAGPVTVAAVILPNTGAELPFADSKTLTARQRE 70 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L E++ A+ ++ A I++ NI AT A A+ L P++ + D + Sbjct: 71 MLAEEVRRVAVAWAVEYAWPDEIERLNILGATHAAAARALAALDPEPQALVTDYLRLRTP 130 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LP A + D++S S+AAAS++AK RD LM +YP YGF +H GY +H+ + Sbjct: 131 LPI--LAPPRADALSYSVAAASLLAKTERDALMTRLDAQYPGYGFAAHKGYGAPQHRAAL 188 Query: 189 KEKGPSCIHRLTFRPL 204 E G S +HR +FRP+ Sbjct: 189 DELGVSAVHRRSFRPI 204 >gi|160915179|ref|ZP_02077392.1| hypothetical protein EUBDOL_01187 [Eubacterium dolichum DSM 3991] gi|158432978|gb|EDP11267.1| hypothetical protein EUBDOL_01187 [Eubacterium dolichum DSM 3991] Length = 208 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 75/197 (38%), Positives = 107/197 (54%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E ++ + GIDE GRG +AGP+VVAA+ + I DSKK+S KKRE L+ Sbjct: 6 EYEKAWYKEGKQAIVGIDEAGRGPIAGPLVVAAVSFPDDYDDDEIYDSKKLSEKKRELLF 65 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 KI A I + ID NI++AT +A+ + Q+I L D +P Sbjct: 66 RKIIKEAREYHILIVDTKTIDTENIYRATQNAMQRLCDEFQMI-DGVLTDAMPLPFC-KQ 123 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +++KGD S+SIAAASI+AKVTRD +M +YP YGF H GYPT H + + Sbjct: 124 DCISLVKGDQKSVSIAAASILAKVTRDHIMMAYDLQYPQYGFAKHKGYPTKVHLEALHRY 183 Query: 192 GPSC-IHRLTFRPLRNL 207 G ++R ++ P+ + Sbjct: 184 GVIDGLYRHSYGPVAKM 200 >gi|269125835|ref|YP_003299205.1| Ribonuclease H [Thermomonospora curvata DSM 43183] gi|268310793|gb|ACY97167.1| Ribonuclease H [Thermomonospora curvata DSM 43183] Length = 250 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 73/211 (34%), Positives = 113/211 (53%), Gaps = 10/211 (4%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP---------FGI 57 P R E+E +RE +AG+DEVGRGA AGPVVV A I P P + Sbjct: 18 PRRAGDEIERRLREAGAVRIAGVDEVGRGAWAGPVVVCAAIAGPGAPPSLPGRGGGTVHL 77 Query: 58 NDSKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116 DSK ++ +RE E + + ++ +A ID+ + +A A A++ L P Sbjct: 78 TDSKLLTRAQREAFAEILPAWLEAHALGAAEPAEIDRVGMTEALRRAAVRALQALPHRPD 137 Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + ++DG+ P + + D S+S+AAAS++AKV RDRLM +++P YGF Sbjct: 138 AVILDGKHDVPGAPWRVHCQVGADRRSVSVAAASVLAKVHRDRLMARLEEEFPGYGFADS 197 Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 GYP+ H++ ++E GP+ HRL++ L +L Sbjct: 198 AGYPSPAHRRALQEHGPTPHHRLSWSYLDDL 228 >gi|320334228|ref|YP_004170939.1| Ribonuclease H [Deinococcus maricopensis DSM 21211] gi|319755517|gb|ADV67274.1| Ribonuclease H [Deinococcus maricopensis DSM 21211] Length = 210 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 72/200 (36%), Positives = 107/200 (53%), Gaps = 3/200 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F LE + + VAG+DE GRGA AGP+ VAA+IL DSK +S +RE Sbjct: 3 PDFSLERQHWARGFFRVAGVDEAGRGAWAGPLTVAAVILPATPTDLPFRDSKTLSAAQRE 62 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L ++ A+ ++ A ID+ N+ AT A A+ L+V P++ + D + D Sbjct: 63 ALAAEVRRVAVAWAVEFAEADEIDRLNVLGATHAAALRALRRLEVAPQALITDYLRLRTD 122 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LP A + D++S S+AAAS++AK RDR M +P YGF +H GY + H+ + Sbjct: 123 LPL--LAPPRADALSYSVAAASLLAKTERDRRMVELDALHPGYGFAAHKGYGVSAHRAAL 180 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 G S HR +F P+ ++ Sbjct: 181 DRLGVSDEHRRSFGPVARVA 200 >gi|238796623|ref|ZP_04640130.1| Ribonuclease HII [Yersinia mollaretii ATCC 43969] gi|238719601|gb|EEQ11410.1| Ribonuclease HII [Yersinia mollaretii ATCC 43969] Length = 166 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 71/162 (43%), Positives = 97/162 (59%), Gaps = 2/162 (1%) Query: 47 ILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIY 105 ILDP G+ DSKK+S K+R LY++IT A+ S+ A + ID NI AT+ A+ Sbjct: 2 ILDPKRPIVGLADSKKLSEKRRLSLYDEITDKALSWSLGRAEPEEIDSLNILHATMLAMQ 61 Query: 106 HAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165 AV L + P LIDG P+ L + AV+KGDS I+AASI+AKVTRDR M Sbjct: 62 RAVAGLHITPDYVLIDGNRCPK-LAMPSLAVVKGDSRVAEISAASILAKVTRDREMTELD 120 Query: 166 KKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 + +P+YGF H GYPTA H + + G + HR +F P++ + Sbjct: 121 RDFPEYGFAQHKGYPTAVHLEKLYAFGATEHHRRSFGPVKRV 162 >gi|302831956|ref|XP_002947543.1| hypothetical protein VOLCADRAFT_87765 [Volvox carteri f. nagariensis] gi|300267407|gb|EFJ51591.1| hypothetical protein VOLCADRAFT_87765 [Volvox carteri f. nagariensis] Length = 678 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 121/247 (48%), Gaps = 48/247 (19%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGAL----------------AGPVVVAAIILDPNNI 53 P ++E +R + V G DE GRG L G + V A P Sbjct: 226 PTQDMETQLRAQGYLAVGGADEAGRGPLAGPVVAAVVVLPPRSDPGLMGVGAEGDAPWQP 285 Query: 54 PFGINDSKKISHKKREELYEKITS--SAIISISSASHQYIDKHNIHKATLDAIYH-AVEN 110 P G+NDSK +S ++RE +YE++T+ ++S H+ ID+ NI +A L A+ AV+ Sbjct: 286 PPGLNDSKAMSEEEREAVYEQLTTDPRVKWAVSVVEHEEIDRINILQAALGAMRESAVKL 345 Query: 111 LQVIP-----------------------------RSALIDGRSIPEDLPCQAFAVIKGDS 141 LQ L+DG +P+DLP AV+KGD+ Sbjct: 346 LQQKQQQGQQQQQQQDAGSAAADPPSAPPPSPALDFLLVDGNRLPKDLPVPGRAVVKGDA 405 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAAS IAKVTRDRLM ++YP YGF H GY H + I++ GPS +HR +F Sbjct: 406 TVSCIAAASCIAKVTRDRLMMKLDEQYPQYGFAQHKGYGVPAHMEAIRKYGPSAVHRRSF 465 Query: 202 RPLRNLS 208 P+++++ Sbjct: 466 EPVKSMT 472 >gi|319788756|ref|YP_004090071.1| Ribonuclease H [Ruminococcus albus 7] gi|315450623|gb|ADU24185.1| Ribonuclease H [Ruminococcus albus 7] Length = 204 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 83/185 (44%), Positives = 114/185 (61%), Gaps = 2/185 (1%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77 + + V G DE GRG LAG V AA++ D + + GINDSKK++ KKRE+L+++I Sbjct: 9 IYREKYEVVCGCDEAGRGPLAGDVFAAAVVFDKDTVIEGINDSKKLTAKKREKLFDEIIE 68 Query: 78 SA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 A SI A+ I+ NI + A+ +VE +++ P LIDG P DL C A AV Sbjct: 69 KAQDFSIQCATVAEIEDINILNCAMLAMKRSVEAMKIKPNVCLIDGNKTP-DLECDAIAV 127 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 +KGD+ S +IAAASI+AKV RDR M +KYP++ F+ H GY T H Q+I + G S I Sbjct: 128 VKGDAQSQAIAAASILAKVARDRYMLQMAEKYPEWQFEKHKGYGTKLHYQMIDKYGESPI 187 Query: 197 HRLTF 201 HR +F Sbjct: 188 HRPSF 192 >gi|119952851|ref|YP_945060.1| ribonuclease HII [Borrelia turicatae 91E135] gi|119861622|gb|AAX17390.1| ribonuclease HII [Borrelia turicatae 91E135] Length = 182 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 108/180 (60%), Gaps = 1/180 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAIISIS 84 + GIDEVGRG + GPV+ AA+I N ++DSKK++ KRE L I ++ + + Sbjct: 3 ICGIDEVGRGCIFGPVLSAAVIFKGNPKFLNALDDSKKLNKSKREYLSSLILENSYYAFA 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 ++ IDK NIH A+L A+ A E L + L+DG+ IP+ + A+IKGDSI Sbjct: 63 EVPNEIIDKINIHHASLLAMQIAYEKLNIECNLVLVDGKFIPKIKAKKIQAIIKGDSIIN 122 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G S +HR +F+ + Sbjct: 123 EIKAASIIAKVQRDKLMDEYDKIYPLYALKKNKGYPTKEHKDAIKKYGISRLHRRSFQLI 182 >gi|55980167|ref|YP_143464.1| ribonuclease HII [Thermus thermophilus HB8] gi|73917835|sp|Q5SLU5|RNH2_THET8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|55771580|dbj|BAD70021.1| ribonuclease HII [Thermus thermophilus HB8] Length = 203 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 81/192 (42%), Positives = 111/192 (57%), Gaps = 6/192 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 LEA K + VAG+DE GRGA AGP+VV A++L P PF DSK +S K RE L E Sbjct: 6 LEAPFWRKGL-LVAGLDEAGRGAWAGPIVVGAVVLPPGEYPF--RDSKLLSPKARERLAE 62 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 K+ A+ ++ A +D+ + KATL A A+ +L + P + + D +P LP Sbjct: 63 KVKEVALAFALGVAEAAEVDRLGVLKATLLAAERALLSLPLAPEALVTDYLPLPTPLPLL 122 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 + K D S ++AAASI+AKV RDR+M + YP YGF H GY T +HQ+ + G Sbjct: 123 SPP--KADEKSPTVAAASILAKVHRDRIMDELDRLYPGYGFARHKGYGTQEHQEALLALG 180 Query: 193 PSCIHRLTFRPL 204 PS +HR F P+ Sbjct: 181 PSPVHRKRFAPV 192 >gi|326559868|gb|EGE10268.1| ribonuclease HII [Moraxella catarrhalis 7169] gi|326570127|gb|EGE20172.1| ribonuclease HII [Moraxella catarrhalis BC8] gi|326570865|gb|EGE20889.1| ribonuclease HII [Moraxella catarrhalis BC7] gi|326576404|gb|EGE26313.1| ribonuclease HII [Moraxella catarrhalis O35E] Length = 248 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 87/208 (41%), Positives = 115/208 (55%), Gaps = 25/208 (12%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDP------------NNIPFGINDSKKISHKKREELY 72 P+ GIDEVGRGAL G + V A+IL N +NDSKK+S K+RE+L+ Sbjct: 28 PIVGIDEVGRGALFGNMTVGAVILPNELSGRFDEIDLTNTKISLLNDSKKLSEKRREQLF 87 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVE------NLQVIPRSALIDGRSI 125 + IT A+ +I ID+ NI++AT+ + A+E NL + LIDG + Sbjct: 88 DIITDLALDYAIVDVPSTIIDQINIYQATMLGMKIAIETIIIKNNLNEKNTTILIDGNQL 147 Query: 126 PE------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P + Q +A+IKGD+ SIA ASI+AKV RDRLM K YP+Y D H GY Sbjct: 148 PSMDGSLGEHFHQIYAMIKGDATHSSIACASILAKVHRDRLMIQHAKSYPEYLLDKHKGY 207 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 TAKH+ I E G HR +F P+R L Sbjct: 208 LTAKHKAAILEYGILPEHRRSFSPIREL 235 >gi|189023629|ref|YP_001934397.1| ribonuclease HII [Brucella abortus S19] gi|189019201|gb|ACD71923.1| Ribonuclease HII/HIII [Brucella abortus S19] Length = 194 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 93/188 (49%), Positives = 131/188 (69%), Gaps = 2/188 (1%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 ++ + +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ +RE LYE I + A Sbjct: 2 KRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTAARREALYEIILTKA 61 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 I +S++S S + ID +I KA L+A+ AV L + P AL+DGR +P LPC A++K Sbjct: 62 ITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRDVPPGLPCPGSALVK 121 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC-IH 197 GD S+SIAAASI+AKVTRDR+M A +P YG + H GY T KH+ I+ +GP +H Sbjct: 122 GDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQKHRAAIESEGPVPGLH 181 Query: 198 RLTFRPLR 205 R TF P++ Sbjct: 182 RYTFAPIK 189 >gi|42527055|ref|NP_972153.1| ribonuclease HII [Treponema denticola ATCC 35405] gi|81412195|sp|Q73MG1|RNH2_TREDE RecName: Full=Ribonuclease HII; Short=RNase HII gi|41817479|gb|AAS12064.1| ribonuclease HII [Treponema denticola ATCC 35405] Length = 198 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 77/198 (38%), Positives = 109/198 (55%), Gaps = 17/198 (8%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS--SAIISI 83 + GIDE GRG LAGPV AA+IL + + DSKK++ KKREE+ + I + + I +I Sbjct: 2 LCGIDEAGRGPLAGPVTAAAVILPSSFDFSILKDSKKLTEKKREEVRKTIYADPNVIWAI 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENL-------------QVIPRSALIDGRSIPEDLP 130 AS+ ID+ NI +AT A+ A E L + I ++DG IP Sbjct: 62 GWASNYEIDEINILQATFLAMERAYEGLYLKLQEFCKLNNDKFIEPDIIVDGNFIPNIKN 121 Query: 131 CQAF-AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C + A++K D + AASI+AK RDR+M YP+YG++ H GY T KH + I+ Sbjct: 122 CSSIKALVKADDSVYEVMAASILAKTARDRMMIRYSWIYPEYGYEKHKGYGTKKHIEAIR 181 Query: 190 EKGPSCIHRLTFRPLRNL 207 G S I R +F ++NL Sbjct: 182 FNGYSPIQRRSF-FVKNL 198 >gi|257094431|ref|YP_003168072.1| ribonuclease HII [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046955|gb|ACV36143.1| Ribonuclease H [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 198 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 92/189 (48%), Positives = 120/189 (63%), Gaps = 6/189 (3%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 V GIDE GRG LAGPVV AA+ILDP+ G+NDSKK+S ++RE L E I + A+ Sbjct: 8 GLVCGIDEAGRGPLAGPVVAAAVILDPSRPIAGLNDSKKLSARRREVLAEAIRARALAWA 67 Query: 84 SSA-SHQYIDKHNIHKATLDAIYHAVENL----QVIPRSALIDGRSIPEDLPCQAFAVIK 138 +A S + ID+ NI +A+L A+ AV L P AL+DG+ P+ LPC A A++ Sbjct: 68 VAAASVEEIDRINILQASLLAMQRAVAALAGGHGAWPVHALVDGQHCPQ-LPCSAEAIVG 126 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD SIAAASI+AK +RD MR H YP YGFD H+GYPTA H + ++E G S HR Sbjct: 127 GDGRIASIAAASILAKTSRDAGMRELHATYPQYGFDRHMGYPTAFHLRALEEHGVSPHHR 186 Query: 199 LTFRPLRNL 207 ++ P+ L Sbjct: 187 RSYAPVARL 195 >gi|158313006|ref|YP_001505514.1| ribonuclease HII [Frankia sp. EAN1pec] gi|238686844|sp|A8L6C6|RNH2_FRASN RecName: Full=Ribonuclease HII; Short=RNase HII gi|158108411|gb|ABW10608.1| Ribonuclease H [Frankia sp. EAN1pec] Length = 240 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 81/200 (40%), Positives = 118/200 (59%), Gaps = 4/200 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI--NDSKKISHKKRE 69 F E + + + PVAG+DE GRGA AGP+VVAA++LD + DSK ++ + RE Sbjct: 15 FGYERALVRRGLGPVAGVDEAGRGACAGPMVVAAVVLDQRRLGLLRRLADSKLLTERVRE 74 Query: 70 EL-YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E+ + + ++A +S ID++ +H A + + AV L V PR L DG ++ Sbjct: 75 EVHADVLAAAAAVSTIVIPAAEIDRNGVHVANIMGMRRAVAVLDVRPRYVLTDGFAV-AG 133 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L ++ AVIKGD + IAAAS++AKVTRDR+MR HK+YP+Y F H GY TA H + Sbjct: 134 LGAESLAVIKGDLMVGCIAAASVVAKVTRDRIMRSLHKRYPEYDFAQHKGYVTAAHTAAM 193 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 GP HRL++ + L+ Sbjct: 194 TRYGPCEQHRLSYVNVAALA 213 >gi|218295991|ref|ZP_03496771.1| Ribonuclease H [Thermus aquaticus Y51MC23] gi|218243729|gb|EED10257.1| Ribonuclease H [Thermus aquaticus Y51MC23] Length = 200 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 80/193 (41%), Positives = 111/193 (57%), Gaps = 6/193 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 LEA + VAG+DE GRGA AGP+VV A+IL P PF DSK ++ K RE L E Sbjct: 4 LEAGFWALGLR-VAGVDEAGRGAWAGPIVVGAVILPPGRYPF--KDSKLLTPKAREALAE 60 Query: 74 KITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 ++ A+ ++ A + +D+ +++ATL A A+ L + P + + D + LP Sbjct: 61 EVRRVALAHALGLAEVEEVDRLGVYRATLLAAKRALSALALPPEALVTDYLPLSTPLPLL 120 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A + D S S+AAASI+AKV RDRLM + YP YGF H GY T +HQ+ + G Sbjct: 121 APP--RADRESPSVAAASILAKVHRDRLMAELDRLYPGYGFAQHKGYGTPEHQEALLALG 178 Query: 193 PSCIHRLTFRPLR 205 PS +HR F P+R Sbjct: 179 PSPVHRRRFTPVR 191 >gi|148243275|ref|YP_001228432.1| ribonuclease HII [Synechococcus sp. RCC307] gi|189043670|sp|A5GW20|RNH2_SYNR3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|147851585|emb|CAK29079.1| Ribonuclease HII [Synechococcus sp. RCC307] Length = 202 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 72/183 (39%), Positives = 99/183 (54%), Gaps = 5/183 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA 79 VAG+DEVGRG L GPV AA+IL G+ DSK +S K+R+ L +I S Sbjct: 1 MIVAGVDEVGRGCLFGPVWAAAVILKAEAFDRLPALGVTDSKALSAKRRQALLPEIHSHC 60 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + + AS ID I AT A+ A++ L P L+DG P V+ Sbjct: 61 LSYGLGQASAACIDAVGIRAATELAMCRALQRLCHSPDHVLVDGSLPLRPWPGSQETVVA 120 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GDS L+IA ASI+AK RD L++ +++P YG SH GY T H+ + + GP+ +HR Sbjct: 121 GDSHCLAIACASILAKEGRDALLQRLDQRWPGYGLASHKGYGTKAHRTALLQWGPTPLHR 180 Query: 199 LTF 201 L+F Sbjct: 181 LSF 183 >gi|25028481|ref|NP_738535.1| ribonuclease HII [Corynebacterium efficiens YS-314] gi|259507538|ref|ZP_05750438.1| ribonuclease HII [Corynebacterium efficiens YS-314] gi|39932418|sp|Q8FP63|RNH2_COREF RecName: Full=Ribonuclease HII; Short=RNase HII gi|23493766|dbj|BAC18735.1| putative ribonuclease HII [Corynebacterium efficiens YS-314] gi|259164858|gb|EEW49412.1| ribonuclease HII [Corynebacterium efficiens YS-314] Length = 231 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 68/194 (35%), Positives = 98/194 (50%), Gaps = 4/194 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREEL 71 E + + PVAG+DE GRGA GP+ +AA IL I + DSK++S R L Sbjct: 13 YEVALSRHGLGPVAGVDEAGRGACCGPISIAACILPDRPIADLAVLTDSKQLSPPVRARL 72 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + A+ S+ S ID+ I A + + AV L+V P L D IP LP Sbjct: 73 MPLVKKHAVAWSVIHISAADIDRFGIQHANISGMRRAVAALEVRPGYVLTDAFRIP-GLP 131 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 C + + GD+ + IAAAS++AK TRD +M +++P YG H GY T H ++ Sbjct: 132 CPSLPIPGGDASARCIAAASVLAKQTRDEIMTDMAQQFPQYGLAGHKGYSTKVHMDAVRR 191 Query: 191 KGPSCIHRLTFRPL 204 G S HR ++ + Sbjct: 192 HGASPQHRYSYANV 205 >gi|189184531|ref|YP_001938316.1| ribonuclease HII [Orientia tsutsugamushi str. Ikeda] gi|238692024|sp|B3CUN5|RNH2_ORITI RecName: Full=Ribonuclease HII; Short=RNase HII gi|189181302|dbj|BAG41082.1| ribonuclease HII [Orientia tsutsugamushi str. Ikeda] Length = 205 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 85/193 (44%), Positives = 124/193 (64%), Gaps = 5/193 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P+ +E + +AG+DE GRG LAGPVV AA++++ + + I DSK +S KRE Sbjct: 3 PNLNIEQDNASE---IIAGVDEAGRGPLAGPVVAAAVVVNQSIMIDDIKDSKVLSKSKRE 59 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 Y+KIT++ SI AS Q IDK+NI +AT A AV+NL +IP L+DG D Sbjct: 60 SCYDKITNNYYYSIGIASVQEIDKYNILEATKLACIRAVKNLAIIPTKVLVDGNMNFTD- 118 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + ++++GD I SIA+ASI+AKVTRDR+M+I H++YP YG++ + GY T H + IK Sbjct: 119 -NRFISIVRGDQICYSIASASIVAKVTRDRMMQILHQEYPVYGWNQNCGYGTKLHIEAIK 177 Query: 190 EKGPSCIHRLTFR 202 G + HR++F+ Sbjct: 178 TYGQTIHHRVSFK 190 >gi|21675069|ref|NP_663134.1| ribonuclease HII [Chlorobium tepidum TLS] gi|39932423|sp|Q8KAA5|RNH2_CHLTE RecName: Full=Ribonuclease HII; Short=RNase HII gi|21648308|gb|AAM73476.1| ribonuclease HII [Chlorobium tepidum TLS] Length = 205 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 84/201 (41%), Positives = 117/201 (58%), Gaps = 7/201 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKKR 68 + E + E + V GIDE GRG LAGPVV AA++ + P G ++DSKK++ + R Sbjct: 5 DFEYPLWES-LSQVCGIDEAGRGPLAGPVVAAAVVFPRHFRPTGIFAKLDDSKKLTAELR 63 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 +EL I SA ++ + ID+ NI +AT+ A+ AVE+L P L+DG Sbjct: 64 DELALAIRESAESWALGVVDAETIDRINILQATMLAMNLAVESLGSTPEFLLVDGNRFRP 123 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP ++KGDS SIAAAS++AK RD LM + +YP+YGF+ H GYPTA+H + Sbjct: 124 VLPIPYQTIVKGDSKVFSIAAASVLAKTHRDELMTTSAAEYPEYGFEVHFGYPTARHVEA 183 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 I G IHR +F+ LR L Sbjct: 184 IARHGRCAIHRQSFK-LRKLG 203 >gi|296113384|ref|YP_003627322.1| ribonuclease HII [Moraxella catarrhalis RH4] gi|295921078|gb|ADG61429.1| ribonuclease HII [Moraxella catarrhalis RH4] gi|326559229|gb|EGE09660.1| ribonuclease HII [Moraxella catarrhalis 46P47B1] gi|326560783|gb|EGE11150.1| ribonuclease HII [Moraxella catarrhalis 103P14B1] gi|326563524|gb|EGE13783.1| ribonuclease HII [Moraxella catarrhalis 12P80B1] gi|326569646|gb|EGE19698.1| ribonuclease HII [Moraxella catarrhalis BC1] gi|326574415|gb|EGE24357.1| ribonuclease HII [Moraxella catarrhalis 101P30B1] Length = 239 Score = 214 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 87/208 (41%), Positives = 115/208 (55%), Gaps = 25/208 (12%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDP------------NNIPFGINDSKKISHKKREELY 72 P+ GIDEVGRGAL G + V A+IL N +NDSKK+S K+RE+L+ Sbjct: 19 PIVGIDEVGRGALFGNMTVGAVILPNELSGRFDEIDLTNTKISLLNDSKKLSEKRREQLF 78 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVE------NLQVIPRSALIDGRSI 125 + IT A+ +I ID+ NI++AT+ + A+E NL + LIDG + Sbjct: 79 DIITDLALDYAIVDVPSTIIDQINIYQATMLGMKIAIETIIIKNNLNEKNTTILIDGNQL 138 Query: 126 PE------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P + Q +A+IKGD+ SIA ASI+AKV RDRLM K YP+Y D H GY Sbjct: 139 PSMDGSLGEHFHQIYAMIKGDATHSSIACASILAKVHRDRLMIQHAKSYPEYLLDKHKGY 198 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 TAKH+ I E G HR +F P+R L Sbjct: 199 LTAKHKAAILEYGILPEHRRSFSPIREL 226 >gi|313681315|ref|YP_004059053.1| RNAase hii [Sulfuricurvum kujiense DSM 16994] gi|313154175|gb|ADR32853.1| RNase HII [Sulfuricurvum kujiense DSM 16994] Length = 182 Score = 214 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 71/177 (40%), Positives = 97/177 (54%), Gaps = 6/177 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + GIDE GRG LAGP+ +A +IL NN G+NDSKK++ KKRE LYE I ++I I+ Sbjct: 3 LCGIDEAGRGPLAGPLTIAGVIL--NNPIEGLNDSKKLTEKKRESLYELICENSIYHIAR 60 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ID+ + + + + L L DG S + ++K D+ Sbjct: 61 FDAAQIDELGLSQCLATGLREIMSALGEA--DYLYDGNSKFGVSGLR--TMVKADATVPE 116 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 ++AASI+AKVTRDR M YP YGFD H GY A H + I++ G IHR TF+ Sbjct: 117 VSAASILAKVTRDREMIQLASLYPQYGFDGHKGYGCAAHIEAIRQYGYCEIHRKTFK 173 >gi|90425833|ref|YP_534203.1| ribonuclease HII [Rhodopseudomonas palustris BisB18] gi|122475150|sp|Q20YA2|RNH2_RHOPB RecName: Full=Ribonuclease HII; Short=RNase HII gi|90107847|gb|ABD89884.1| RNase HII [Rhodopseudomonas palustris BisB18] Length = 266 Score = 214 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 1/195 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + ++ +WPVAG DE GRG LAGPVV AA++LDP IP G++DSK+++ KRE Sbjct: 44 PSFRRERALLKRGVWPVAGCDEAGRGPLAGPVVAAAVVLDPKRIPKGLDDSKRLTADKRE 103 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 +L+E+I ++A +++ AS ID+ NI +A+L A+ AV L +PR +DGR Sbjct: 104 QLFEQICATAAFAVAYASPARIDRDNILRASLWALAKAVHALPEMPRHVFVDGRD-KIAT 162 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C AVI GD + LSIAAASIIAKV+RDRLM + P YGF++H GY +H + Sbjct: 163 SCDCDAVIGGDGLVLSIAAASIIAKVSRDRLMCRLAEDCPGYGFENHKGYGVPEHLAALD 222 Query: 190 EKGPSCIHRLTFRPL 204 GPS HR F P+ Sbjct: 223 RLGPSKHHRRLFAPV 237 >gi|254429946|ref|ZP_05043653.1| ribonuclease HII [Alcanivorax sp. DG881] gi|196196115|gb|EDX91074.1| ribonuclease HII [Alcanivorax sp. DG881] Length = 220 Score = 214 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 86/190 (45%), Positives = 116/190 (61%), Gaps = 2/190 (1%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 + + VAG+DEVGRG L G VV AA++LDP + G+ DSKKIS KKR L +I Sbjct: 22 SAFAWQPGMLVAGVDEVGRGPLVGAVVTAAVVLDPQHPIAGLADSKKISEKKRLALEAEI 81 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 S A+ ++ A ID+ NI AT+ A+ AV L + ++ L+DG +P LPC + Sbjct: 82 KSHALGWALGRAEPAEIDELNILHATMLAMQRAVAGLPMAAQAVLVDGNRVPA-LPCPSQ 140 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 AV+KGD +I+AASI+AKV RDR M H +YP YGFD H GYPTA H +++ G Sbjct: 141 AVVKGDGRVPAISAASILAKVARDREMHALHARYPQYGFDRHKGYPTAVHMAALEQHGAL 200 Query: 195 CIHRLTFRPL 204 HR +F P+ Sbjct: 201 AEHRRSFGPV 210 >gi|223986426|ref|ZP_03636431.1| hypothetical protein HOLDEFILI_03743 [Holdemania filiformis DSM 12042] gi|223961622|gb|EEF66129.1| hypothetical protein HOLDEFILI_03743 [Holdemania filiformis DSM 12042] Length = 207 Score = 214 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 72/198 (36%), Positives = 104/198 (52%), Gaps = 5/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E E ++ V GIDE GRG +AGP+VVA + D I DSK +S KKRE+L Sbjct: 7 LEYERSFWDQG-KHVVGIDEAGRGPIAGPLVVAGAVFDIGYANSEIYDSKALSEKKREKL 65 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A I + + ID NI++AT A+ ++ + L D + Sbjct: 66 FSLILREARCYKIKIVTPEEIDTLNIYRATQKAMEEI--ACEINAEAVLTDAMPL-LHCS 122 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD SLSIAA SI+AKV RD +M + YPDYGF H GYPT H + +++ Sbjct: 123 KPTLSIIKGDQKSLSIAAGSILAKVVRDHIMLGYDRLYPDYGFARHKGYPTKAHLEAMEK 182 Query: 191 KGPSCIHRLTFRPLRNLS 208 G +R ++ P+ ++ Sbjct: 183 YGVLPFYRKSYGPVARMN 200 >gi|306837307|ref|ZP_07470190.1| ribonuclease HII [Brucella sp. NF 2653] gi|306407620|gb|EFM63816.1| ribonuclease HII [Brucella sp. NF 2653] Length = 194 Score = 214 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 93/188 (49%), Positives = 130/188 (69%), Gaps = 2/188 (1%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 ++ +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ +RE LYE I + A Sbjct: 2 KRGSKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTAARREALYEIILAKA 61 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 I +S++S S + ID +I KA L+A+ AV L + P AL+DGR +P LPC A++K Sbjct: 62 IAVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRDVPPGLPCPGSALVK 121 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC-IH 197 GD S+SIAAASI+AKVTRDR+M A +P YG + H GY T KH+ I+ +GP +H Sbjct: 122 GDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYGTQKHRAAIESEGPVPGLH 181 Query: 198 RLTFRPLR 205 R TF P++ Sbjct: 182 RYTFAPIK 189 >gi|269926380|ref|YP_003323003.1| Ribonuclease H [Thermobaculum terrenum ATCC BAA-798] gi|269790040|gb|ACZ42181.1| Ribonuclease H [Thermobaculum terrenum ATCC BAA-798] Length = 219 Score = 214 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 73/197 (37%), Positives = 105/197 (53%), Gaps = 8/197 (4%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN-----NIPFGINDSKKISHKKR 68 E + + VAG+DE GRGA AGPV A ++L P+ ++ + DSK +S +R Sbjct: 16 FEPTLWRQGYAYVAGLDEAGRGAWAGPVFGAVVVLPPDLSTLESLAEVVRDSKVLSPNRR 75 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E YE I +SA+ I I +++ ID I +AT A A+ + +P LID I Sbjct: 76 ELAYEAIKASALYIGIGASTPDEIDTLGISRATELAWLRALRDAD-LPDVLLIDAFKI-R 133 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 A++ GD++ LSIAAAS++AKV RDR M + P + F H GY T +HQ Sbjct: 134 ACSINQVAIVDGDALCLSIAAASVVAKVLRDRYMADLTEYVPGFSFHKHKGYGTREHQAE 193 Query: 188 IKEKGPSCIHRLTFRPL 204 I G + HR +F P+ Sbjct: 194 IAIYGVTPQHRRSFAPI 210 >gi|241896010|ref|ZP_04783306.1| ribonuclease HII [Weissella paramesenteroides ATCC 33313] gi|241870741|gb|EER74492.1| ribonuclease HII [Weissella paramesenteroides ATCC 33313] Length = 254 Score = 214 bits (546), Expect = 5e-54, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 18/206 (8%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII-------LDPNNIPFGINDSKK 62 E ++ VAGIDEVGRG LAGP +D + ++DSK+ Sbjct: 57 KRLNFERKAWQQG-KVVAGIDEVGRGPLAGP-------VVAAAVVIDDSFDMTIVHDSKQ 108 Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 +S K R+ + +I + + + ID+ NI++A+ A+ +VE L V LID Sbjct: 109 LSEKTRQSIDTEIREKVVDFAFGVVDAKDIDRLNIYEASRVAMRQSVEALSVPIDGLLID 168 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 ++ DL +IKGD S+SI AASI+AK RD LM+ +++P YGF+ + GY T Sbjct: 169 AMTV--DLEIPQEKLIKGDDRSISIGAASILAKNYRDNLMKDFAQQFPGYGFEHNAGYGT 226 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207 A+H + G + IHR +F P++ Sbjct: 227 AEHLAGLNTLGITPIHRKSFAPVKKF 252 >gi|54026116|ref|YP_120358.1| ribonuclease HII [Nocardia farcinica IFM 10152] gi|81373729|sp|Q5YS47|RNH2_NOCFA RecName: Full=Ribonuclease HII; Short=RNase HII gi|54017624|dbj|BAD58994.1| putative RNase HII [Nocardia farcinica IFM 10152] Length = 251 Score = 214 bits (546), Expect = 5e-54, Method: Composition-based stats. Identities = 81/196 (41%), Positives = 112/196 (57%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREEL 71 LEA + + PVAG+DE GRG AGP+VVAA +L P + G++DSKK++ REEL Sbjct: 22 LEAALIRGGLGPVAGVDEAGRGPCAGPLVVAACLLAPKAYDRLAGLDDSKKLTEAAREEL 81 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y IT A+ + ID IH A ++ + AV L+ P L DG +P L Sbjct: 82 YPVITRLALAWEVVVIPAWEIDAIGIHVANIEGMRRAVAGLRQRPGYVLTDGFRVP-GLA 140 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+ + IAAASI+AKVTRDR+M ++P YGF +H GY T +H ++ Sbjct: 141 APSLPVIGGDAAAACIAAASILAKVTRDRIMVELDSRHPGYGFAAHKGYNTPEHTAALQR 200 Query: 191 KGPSCIHRLTFRPLRN 206 GP HR ++R +R Sbjct: 201 LGPCSEHRRSWRNVRE 216 >gi|319441364|ref|ZP_07990520.1| ribonuclease HII [Corynebacterium variabile DSM 44702] Length = 227 Score = 214 bits (546), Expect = 5e-54, Method: Composition-based stats. Identities = 79/204 (38%), Positives = 107/204 (52%), Gaps = 6/204 (2%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSK 61 S+PE LE V + + PVAG+DE GRGA GPV +AA IL P +P G+ DSK Sbjct: 7 RSMPE--GRTLEWAVHKAGLDPVAGVDEAGRGACCGPVTIAACILPPGPLPELDGLTDSK 64 Query: 62 KISHKKREELYEKITSSAIISIS-SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K++ KKR+ L++ I A+ Y+D I A L + AV L V P L Sbjct: 65 KLTAKKRDRLFDIIVDVAVDYAVVHVPASYVDDWGIQHANLGGMRRAVARLDVRPGYILT 124 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 D I + V+KGD I I+AAS++AKV+RDR+M +YP YG H GY Sbjct: 125 DAMKI-DGFTRPHLPVVKGDLICRCISAASVLAKVSRDRMMVDLDARYPGYGLAGHKGYG 183 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPL 204 TA H + + G + HR T+ + Sbjct: 184 TAAHMESVCLLGGTPEHRYTYSNV 207 >gi|114321001|ref|YP_742684.1| RNase HII [Alkalilimnicola ehrlichii MLHE-1] gi|122311401|sp|Q0A7J3|RNH2_ALHEH RecName: Full=Ribonuclease HII; Short=RNase HII gi|114227395|gb|ABI57194.1| RNase HII [Alkalilimnicola ehrlichii MLHE-1] Length = 198 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 78/192 (40%), Positives = 109/192 (56%), Gaps = 20/192 (10%) Query: 25 PVAGIDEVGRGALAGPVVVAAI---------ILDPNNIPFGINDSKKISHKKREELYEKI 75 +AG+DEVGRG L ILDP+ G+ DSK++S +R EL +I Sbjct: 13 LLAGVDEVGRGPL---------AGAVVAAAVILDPDRPIAGLRDSKRLSAARRSELDRRI 63 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 + A+ +S+ A ID+ NI +A++ A+ AV L P AL+DG P LPC A Sbjct: 64 RAQALAVSLGRAEVAEIDRLNILQASMLAMQRAVAGLDPAPVQALVDGNRAPA-LPCPAQ 122 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 A++KGD +IAAASI+AK RD MR ++YP YGF+ H+GYPT +H Q ++ G Sbjct: 123 AIVKGDDRVPAIAAASILAKQARDAEMRALAEQYPGYGFERHMGYPTTEHLQALRTLGAC 182 Query: 195 CIHRLTFRPLRN 206 HR +F P+R Sbjct: 183 PAHRRSFAPVRR 194 >gi|332295819|ref|YP_004437742.1| Ribonuclease H [Thermodesulfobium narugense DSM 14796] gi|332178922|gb|AEE14611.1| Ribonuclease H [Thermodesulfobium narugense DSM 14796] Length = 210 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 79/180 (43%), Positives = 104/180 (57%), Gaps = 1/180 (0%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-II 81 +P G+DEVGRGALAGP+VV A+ D + + G+ DSK + ++R EL + I A Sbjct: 19 FFPSLGMDEVGRGALAGPLVVGAVYFDKDYMIDGLKDSKLLKDQERRELCDIIKRKASYW 78 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 SI A H IDK NI+ A + A A+ N+ +P + DG + P + K D Sbjct: 79 SIGWAYHWEIDKLNIYSALVLACKRAILNMNFLPEAIFFDGSLKLKTFPFKHIVFPKADR 138 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + S+AAASIIAKV RD M K YPDY FD H GY T H +V+++KG S IHR TF Sbjct: 139 LVPSVAAASIIAKVARDDYMINISKYYPDYLFDIHKGYGTKFHLEVLEKKGLSKIHRKTF 198 >gi|50365354|ref|YP_053779.1| ribonuclease HII, primer excision [Mesoplasma florum L1] gi|50363910|gb|AAT75895.1| Ribonuclease HII, primer excision [Mesoplasma florum L1] Length = 208 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 82/197 (41%), Positives = 117/197 (59%), Gaps = 5/197 (2%) Query: 14 LEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 ++ +REK ++G DE GRGA+AGPVVVA++IL + I DSKK+S K+RE L Sbjct: 9 FDSQIREKYKTDFISGSDEAGRGAMAGPVVVASVILPKDYKNCLIRDSKKLSKKQRESLC 68 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLP 130 E+I S AI +I +D N +A+ + ++ NL+ P LID I ++ Sbjct: 69 EEIKSVAISYAIEIIEADEVDILNPKQASRIGMTKSIMNLKPKPDLCLIDAENIIIQEYV 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 C F IKGD +S SIAAASI+AK TRD +M K YP+Y F+SH GY +H + K Sbjct: 129 CAPF--IKGDDLSQSIAAASILAKTTRDNIMLDYAKIYPEYNFESHKGYCVKEHVEKTKM 186 Query: 191 KGPSCIHRLTFRPLRNL 207 G IHR T++P++++ Sbjct: 187 LGVLPIHRKTYKPIKDI 203 >gi|227824335|ref|ZP_03989167.1| ribonuclease HII [Acidaminococcus sp. D21] gi|226904834|gb|EEH90752.1| ribonuclease HII [Acidaminococcus sp. D21] Length = 270 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 77/197 (39%), Positives = 113/197 (57%), Gaps = 2/197 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + E+ VAG DE GRG LAGP+V AA+IL G+NDSKK+ K+RE LY Sbjct: 57 EPERIFWEQGFVHVAGTDEAGRGPLAGPLVTAAVILPHEIDLPGLNDSKKVPPKRREALY 116 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I A+ +++ Q ID NI++A ++ + +L P +AL D + + Sbjct: 117 DEILQQALAVTVRILGPQEIDTLNIYQAAKQSMQMCLTHLSAAPDAALTDAMPLSL-VGI 175 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++ GD+ S +IAAASIIAKVTRDR+M + YP YGF S+ GY + H + Sbjct: 176 PVKDLVHGDARSAAIAAASIIAKVTRDRIMVELDQTYPGYGFSSNKGYGSKAHLDALAAL 235 Query: 192 GPSCIHRLTFRPLRNLS 208 G + HR T+ P++ L+ Sbjct: 236 GVTPWHRRTYEPIKGLA 252 >gi|159470503|ref|XP_001693396.1| predicted protein [Chlamydomonas reinhardtii] gi|158282899|gb|EDP08650.1| predicted protein [Chlamydomonas reinhardtii] Length = 197 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 84/193 (43%), Positives = 116/193 (60%), Gaps = 10/193 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN-----NIPFGINDSKKISHKKREELYEKIT--SS 78 V G DE GRG LAGPVV A +L +P G+NDSK I+ +RE ++E +T S Sbjct: 1 VGGADEAGRGPLAGPVVAAVCVLPHQSDTSWQMPAGLNDSKAITEDEREAIFEALTTDSR 60 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP---RSALIDGRSIPEDLPCQAFA 135 ++S H+ ID+ NI +A L A+ ++ ++ L+DG +P+DLPC A A Sbjct: 61 VRWAVSIIDHETIDRINILQAALSAMRNSALDVHGQAPGLDYLLVDGNKLPKDLPCPARA 120 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V+KGD+ IAAASIIAKVTRDRLM K+YP YGF H GY +H I GPS Sbjct: 121 VVKGDATVACIAAASIIAKVTRDRLMLELDKQYPQYGFAQHKGYGVPQHMAAIHTHGPSA 180 Query: 196 IHRLTFRPLRNLS 208 +HR +F P+++++ Sbjct: 181 VHRRSFEPVKSMT 193 >gi|157737860|ref|YP_001490544.1| ribonuclease HII [Arcobacter butzleri RM4018] gi|189043562|sp|A8EVA1|RNH2_ARCB4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|157699714|gb|ABV67874.1| ribonuclease HII [Arcobacter butzleri RM4018] Length = 192 Score = 214 bits (545), Expect = 7e-54, Method: Composition-based stats. Identities = 77/187 (41%), Positives = 105/187 (56%), Gaps = 7/187 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M + GIDE GRG LAGP+VVA +IL + G+NDSK +S KKRE+L+++I + Sbjct: 1 MKNLCGIDEAGRGPLAGPLVVAGVILLED--IVGLNDSKVLSEKKREKLFDEIKEKSKYH 58 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA-FAVIKGDS 141 I + + ID+ I +I +ENL+ S L+DG + + Q IK D+ Sbjct: 59 IVFSDAKLIDEKGISFCLKSSILEIIENLKEFSNSFLMDGNT---NFGIQILQKEIKADA 115 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++AASI+AKV+RDR M YP Y F H GY T H + IKE G S IHR TF Sbjct: 116 KYAQVSAASILAKVSRDRFMDEISPLYPKYDFHKHKGYGTKAHIEAIKEFGRSDIHRHTF 175 Query: 202 RPLRNLS 208 + L+ L Sbjct: 176 K-LKALG 181 >gi|53803396|ref|YP_114857.1| ribonuclease HII [Methylococcus capsulatus str. Bath] gi|81681269|sp|Q604U3|RNH2_METCA RecName: Full=Ribonuclease HII; Short=RNase HII gi|53757157|gb|AAU91448.1| ribonuclease HII [Methylococcus capsulatus str. Bath] Length = 193 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 75/184 (40%), Positives = 103/184 (55%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAGIDEVGRG +AGPV+ AA+I P G+ DSK++ +R L +I S ++ ++ Sbjct: 4 LVAGIDEVGRGCIAGPVIAAAVIFAPGQDTHGLADSKRLRPDRRLVLAGRICSESLAWAV 63 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI +AT A+ AV L V+P +DG P L C A++ GD+ Sbjct: 64 GRAEVSEIDQLNILRATHLAMCRAVAALPVLPDWVRVDGNRYPP-LDCPGEAIVGGDASV 122 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 IAAASI+AKV RDR M + + P Y H GYPT H + +G S HR +F P Sbjct: 123 AEIAAASILAKVFRDREMEVLDRLCPGYALGVHKGYPTRLHIDRLASRGASFFHRRSFAP 182 Query: 204 LRNL 207 +R + Sbjct: 183 VRAV 186 >gi|320159510|ref|YP_004172734.1| ribonuclease HII [Anaerolinea thermophila UNI-1] gi|319993363|dbj|BAJ62134.1| ribonuclease HII [Anaerolinea thermophila UNI-1] Length = 224 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 114/222 (51%), Gaps = 31/222 (13%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAI------------ILDPNN 52 +P P E + + + VAG+DE GR IL + Sbjct: 8 DLPHDPTLAFEQSLWQAGVLHVAGVDEAGR------------GAWAGPVAAAAVILPSGD 55 Query: 53 IPF-----GINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYH 106 G+ DSK+++ K RE E I +A+ + AS + I+ I AT A+ Sbjct: 56 SALLERLHGVRDSKQMTAKAREGFAEVIRQTALAWGVGFASVEEIETQGIVPATRLAMMR 115 Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 A++ + P LID +PE +P ++IKGD+ SLSIAAAS++AK RD LMR + Sbjct: 116 ALQACALSPTHLLIDALRLPE-IPLPQTSLIKGDARSLSIAAASVLAKTARDALMRDLAR 174 Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNLS 208 +YP YGF+ H GY TA+H+ +++ GP +HR T+RP+ +LS Sbjct: 175 QYPQYGFELHKGYGTARHRAALEQWGPCPLHRRTYRPVMHLS 216 >gi|225021101|ref|ZP_03710293.1| hypothetical protein CORMATOL_01113 [Corynebacterium matruchotii ATCC 33806] gi|224946101|gb|EEG27310.1| hypothetical protein CORMATOL_01113 [Corynebacterium matruchotii ATCC 33806] Length = 236 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 70/197 (35%), Positives = 100/197 (50%), Gaps = 4/197 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKR 68 H E + + + PVAG+DE GRGA AGP+ +AA IL P + DSKK+S R Sbjct: 7 HRTFEVALHQAGLGPVAGVDEAGRGACAGPITIAACILPSQPLAALSRLTDSKKLSAATR 66 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 L+ I A+ SI S ID++ I A + + AV L V P L D + + Sbjct: 67 AALFPLIQHHAVAWSILHISAADIDQYGIQHANVFGMRRAVALLDVQPGYVLTDALKV-D 125 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 C +I GD+ + I+AAS++AK RD +M + YP Y F SH GY T H Sbjct: 126 GFACSYLPIIGGDAAARCISAASVLAKHARDLVMAELAETYPRYEFASHKGYGTKVHMTA 185 Query: 188 IKEKGPSCIHRLTFRPL 204 ++ G S +HR ++ + Sbjct: 186 VRRYGASPVHRYSYANV 202 >gi|94969905|ref|YP_591953.1| RNase HII [Candidatus Koribacter versatilis Ellin345] gi|189043528|sp|Q1IMM1|RNH2_ACIBL RecName: Full=Ribonuclease HII; Short=RNase HII gi|94551955|gb|ABF41879.1| RNase HII [Candidatus Koribacter versatilis Ellin345] Length = 254 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 85/192 (44%), Positives = 114/192 (59%), Gaps = 3/192 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + +AGIDEVGRGAL GPVV AA+ILDPN G+ DSK + + RE L + Sbjct: 36 YEKLAADSGAKLIAGIDEVGRGALFGPVVAAAVILDPNYRIKGLRDSKLLPAETREILSK 95 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I I SI++ ID+ NI+ A+ A+ HAV L P LID + DL C Sbjct: 96 RIREHCIAWSIAAVDVARIDQLNIYWASNLAMKHAVRGLSCQPDHLLIDAMKL--DLDCA 153 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +I GD++S SIAAASIIAKV RD L+R +P+Y S+ GY KH + ++E G Sbjct: 154 QTPIIHGDALSASIAAASIIAKVHRDALIREWAPIFPEYDLASNKGYSAPKHIKALREFG 213 Query: 193 PSCIHRLTFRPL 204 PS +HR +F P+ Sbjct: 214 PSPLHRQSFAPV 225 >gi|300783884|ref|YP_003764175.1| ribonuclease HII [Amycolatopsis mediterranei U32] gi|299793398|gb|ADJ43773.1| ribonuclease HII [Amycolatopsis mediterranei U32] Length = 280 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 75/201 (37%), Positives = 114/201 (56%), Gaps = 4/201 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69 + L+ + + + PVAG+DE G GA AGP+VVAA +L + + DSK ++ K R+ Sbjct: 8 WGLQGALDRRGLGPVAGVDEAGAGACAGPLVVAACVLKQGDAAKLIELTDSKMMTAKARD 67 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +Y+ + + A+ S+ + +D + I L+ + A L+V P L DG +P Sbjct: 68 RVYDLVLARAVDYSVIVIPTEEVDLYGIRVMNLEGMRRAAAALRVQPGYVLTDGFRVP-G 126 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L AVIKGD IAAAS++AKVTRDR+M H +P YGFD H GY T+ H + Sbjct: 127 LTAPNTAVIKGDRSVACIAAASVLAKVTRDRIMAGYHDDFPHYGFDVHKGYSTSDHLAAL 186 Query: 189 KEKGPSCIHRLTFRPLRNLSV 209 +E GPS +HR ++ + ++V Sbjct: 187 REHGPSDVHRWSYTNVATVAV 207 >gi|311898762|dbj|BAJ31170.1| putative ribonuclease HII [Kitasatospora setae KM-6054] Length = 227 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 69/201 (34%), Positives = 108/201 (53%), Gaps = 1/201 (0%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 + P +E + + VAG+DEVGRGA AGPV+V A + P G+ DSK ++ ++ Sbjct: 4 DPPTHAVERSLHQAGARVVAGLDEVGRGAWAGPVMVGAAVTGLRRPPEGLTDSKLLTERR 63 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L + +I SAS D+ + A A A+E L V P + ++DG+ Sbjct: 64 RAALAPVLEEWVTAYAIGSASALECDELGMTAALRLAAVRALEELPVRPDAVILDGKHDY 123 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 P + VIKGD + ++AAS++AKV RD LM +P++ F + GYP+ H+ Sbjct: 124 LGGPWRVRTVIKGDQSCVCVSAASVLAKVRRDALMAELGSGHPEFAFAENAGYPSPTHRA 183 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 ++E GP+ HRL++ L +L Sbjct: 184 ALEEHGPTEHHRLSWAYLDDL 204 >gi|296139349|ref|YP_003646592.1| ribonuclease H [Tsukamurella paurometabola DSM 20162] gi|296027483|gb|ADG78253.1| Ribonuclease H [Tsukamurella paurometabola DSM 20162] Length = 228 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 81/195 (41%), Positives = 113/195 (57%), Gaps = 4/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREEL 71 +E+++ + PVAGIDE GRGA AGP+ VAA IL P ++DSKK+S RE L Sbjct: 20 MESVLGRAGLGPVAGIDEAGRGACAGPMTVAACILPRKIPPSLARLDDSKKLSEIARERL 79 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y +I A+ S+ + +D+ +H A + + A+ LQV P LIDG ++P L Sbjct: 80 YPEILKHAVSWSVVTIPAAEVDRLGVHVANISGMRRAIATLQVTPGYVLIDGFTVP-GLG 138 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+ + IAAAS++AKVTRDR+M Y YGF H GY TA H + E Sbjct: 139 IPSLPVIGGDASASCIAAASVLAKVTRDRVMAELDADYDGYGFAVHKGYSTAAHMAALGE 198 Query: 191 KGPSCIHRLTFRPLR 205 GPS HR+ ++ +R Sbjct: 199 LGPSDQHRMRYQNVR 213 >gi|305680699|ref|ZP_07403506.1| ribonuclease HII [Corynebacterium matruchotii ATCC 14266] gi|305658904|gb|EFM48404.1| ribonuclease HII [Corynebacterium matruchotii ATCC 14266] Length = 236 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 69/197 (35%), Positives = 100/197 (50%), Gaps = 4/197 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKR 68 H E + + + PVAG+DE GRGA AGP+ +AA IL P + + DSKK+S R Sbjct: 7 HRTFEVALHQAGLGPVAGVDEAGRGACAGPITIAACILPPQPLAALSRLTDSKKLSAATR 66 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 L+ I A+ SI S ID++ I A + + V L V P L D + + Sbjct: 67 AALFPLIQHHAVAWSILHISAADIDQYGIQHANVFGMRRVVALLDVQPGYVLTDALKV-D 125 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 C +I GD+ + I+AAS++AK RD +M + YP Y F SH GY T H Sbjct: 126 GFACSYLPIIGGDAAARCISAASVLAKHARDLVMAELAETYPRYEFASHKGYGTKVHMTA 185 Query: 188 IKEKGPSCIHRLTFRPL 204 ++ G S +HR ++ + Sbjct: 186 VRRYGASPVHRYSYANV 202 >gi|19553236|ref|NP_601238.1| ribonuclease HII [Corynebacterium glutamicum ATCC 13032] gi|62390872|ref|YP_226274.1| ribonuclease HII [Corynebacterium glutamicum ATCC 13032] gi|41326211|emb|CAF20373.1| PROBABLE RIBONUCLEASE HII PROTEIN [Corynebacterium glutamicum ATCC 13032] Length = 222 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 69/194 (35%), Positives = 95/194 (48%), Gaps = 4/194 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREEL 71 E + + PVAG+DE GRGA GP+ +AA IL I + DSKK+S RE+L Sbjct: 10 FEVTLSRNGLGPVAGVDEAGRGACCGPISIAACILPDKPIQELAALTDSKKLSASTREKL 69 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 I A+ S+ S Q ID+ I A + + AV L P L D +P Sbjct: 70 MPLIKKHALAWSVIVISAQDIDRFGIQHANISGMRRAVAALGTQPGYVLTDAMKVP-GFT 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD+ + IAAAS++AK TRD +M YP YG + H GY T H ++ Sbjct: 129 VPYLPIIGGDASARCIAAASVLAKQTRDDIMTDMANDYPHYGLEIHKGYSTKIHMDAVRH 188 Query: 191 KGPSCIHRLTFRPL 204 G S HR ++ + Sbjct: 189 HGASPEHRYSYANV 202 >gi|254465727|ref|ZP_05079138.1| ribonuclease HII [Rhodobacterales bacterium Y4I] gi|206686635|gb|EDZ47117.1| ribonuclease HII [Rhodobacterales bacterium Y4I] Length = 180 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 82/175 (46%), Positives = 115/175 (65%) Query: 33 GRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYID 92 GRG LAGPV AA++LD IP G+NDSKK+S KKRE L I S A +I+ A+ + ID Sbjct: 2 GRGPLAGPVTAAAVVLDAAAIPDGLNDSKKLSLKKREALEGAILSCAQTAIAHATVEEID 61 Query: 93 KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASII 152 NI +A+ A+ AV L P LIDG IP+ L AV+KGD+ SLSIAAASII Sbjct: 62 SLNILRASHLAMERAVAALDPAPDYLLIDGNLIPKGLLLPCEAVVKGDAKSLSIAAASII 121 Query: 153 AKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 AK+ RDR+M +++P YG++ + GYP+ +H++ + + G + HR +F+P+ N+ Sbjct: 122 AKLARDRIMVDLAQQFPGYGWEKNAGYPSKQHREALVQLGVTPHHRRSFKPVHNI 176 >gi|317125409|ref|YP_004099521.1| ribonuclease H [Intrasporangium calvum DSM 43043] gi|315589497|gb|ADU48794.1| Ribonuclease H [Intrasporangium calvum DSM 43043] Length = 264 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 106/221 (47%), Gaps = 19/221 (8%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGIN 58 M + ++P +E ++ +AG+DEVGRGALAGPV V +++D + P G+ Sbjct: 1 MAVRTPSKKPSLRVERQLQRAGHRLLAGMDEVGRGALAGPVSVGVVVIDETVRSAPTGVK 60 Query: 59 DSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117 DSK ++ + R L +I A+ S+ AS ID I A A A+ L+V+P Sbjct: 61 DSKLLTERARRGLVPRIQRWAVAYSVGHASPAEIDDIGIMAALRLAGLRALATLEVVPDL 120 Query: 118 ALIDGRSIPEDLPC----------------QAFAVIKGDSISLSIAAASIIAKVTRDRLM 161 ++DG P +IK D S+AAAS+IAKV RD LM Sbjct: 121 VILDGNHDWLTAPYEVGLLAFADAAGPTTPPVTTMIKADLKCSSVAAASVIAKVERDELM 180 Query: 162 RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 ++P YG+ + GY +H + GP +HR ++R Sbjct: 181 VRLGAEHPAYGWTLNKGYSAPEHIDALARIGPCELHRRSWR 221 >gi|227549010|ref|ZP_03979059.1| ribonuclease HII [Corynebacterium lipophiloflavum DSM 44291] gi|227078920|gb|EEI16883.1| ribonuclease HII [Corynebacterium lipophiloflavum DSM 44291] Length = 213 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 71/196 (36%), Positives = 101/196 (51%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREEL 71 E + + + PVAG+DE GRGA GPV VAA +L P + G+ DSK++ R L Sbjct: 10 YEVALDKAGLGPVAGVDEAGRGACFGPVTVAACVLPPRPLAQLDGLTDSKQLRPVARASL 69 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ ++ ID+ I A +D AV L P L+D +P L Sbjct: 70 YDAICDVALSFAVVHIPAAEIDRRGIQVANVDGARRAVAKLGARPGYVLVDALRVP-GLT 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GDS + IAAAS++AKV+RDRL+ ++Y DYG H GY T H ++ Sbjct: 129 APQLPIIGGDSTARCIAAASVLAKVSRDRLVTEMAQRYADYGIAGHKGYGTQAHMAAVRR 188 Query: 191 KGPSCIHRLTFRPLRN 206 G S HR ++ +R Sbjct: 189 YGASDEHRYSYANVRQ 204 >gi|294155904|ref|YP_003560288.1| ribonuclease HII [Mycoplasma crocodyli MP145] gi|291599929|gb|ADE19425.1| ribonuclease HII [Mycoplasma crocodyli MP145] Length = 204 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 71/187 (37%), Positives = 108/187 (57%), Gaps = 2/187 (1%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 K + G+DE GRGALAGP+VVA +I N INDSKK++ K+RE L+ KI AI Sbjct: 10 KRFEKILGMDEAGRGALAGPLVVAGVIFPANYKNDEINDSKKLTSKQRENLFFKIQEDAI 69 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 I S+ +D+ N KA++ + L + D + + ++KG Sbjct: 70 AYEIIELSNFEVDELNPKKASIVGMEKIANLLADKYDVVITDFEKLNLQ-DKKQINLVKG 128 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D+IS+S+AAASI+AK RD++MR H KYP + +D + GY T H + +++ G S HRL Sbjct: 129 DTISISVAAASILAKHYRDQVMRKLHLKYPMFSWDKNKGYGTKLHLEGLRKNGVSPFHRL 188 Query: 200 TFRPLRN 206 +++P++ Sbjct: 189 SYKPVKQ 195 >gi|328752252|gb|EGF65868.1| ribonuclease HII [Propionibacterium acnes HL020PA1] Length = 204 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 76/195 (38%), Positives = 104/195 (53%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELY 72 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L+ Sbjct: 4 ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 63 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A+ +S D+ + +A + + AV L V P L DG + + L Sbjct: 64 NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 122 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA Q+ +KE Sbjct: 123 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALQQRRLKEL 182 Query: 192 GPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 183 GPSRQHRMSYANVRR 197 >gi|167750814|ref|ZP_02422941.1| hypothetical protein EUBSIR_01796 [Eubacterium siraeum DSM 15702] gi|167656249|gb|EDS00379.1| hypothetical protein EUBSIR_01796 [Eubacterium siraeum DSM 15702] Length = 219 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 89/196 (45%), Positives = 116/196 (59%), Gaps = 2/196 (1%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E+ L + + GIDE GRG LAG V AA+IL + I GINDSKK++ K Sbjct: 13 EEKKDLFLYDKEMRTHCGVICGIDEAGRGPLAGDVYAAAVILPDDIIIDGINDSKKLTEK 72 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KRE L++ I A+ I++AS + ID NI A + A+ A + L V P +ALIDG Sbjct: 73 KREALFDIIREKAVSYCIATASVEEIDSMNILNAAMLAMKRAYDGLDVKPDTALIDGNKT 132 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P L AV+KGD+ S SIAAASI+AKV RDR M+ +KYP Y F+ H GY T H Sbjct: 133 P-GLDIPETAVVKGDATSASIAAASILAKVARDRYMKELAEKYPQYMFEKHKGYGTKLHY 191 Query: 186 QVIKEKGPSCIHRLTF 201 +++ + G S IHR TF Sbjct: 192 EMLDKYGASDIHRKTF 207 >gi|148284488|ref|YP_001248578.1| ribonuclease HII [Orientia tsutsugamushi str. Boryong] gi|189043633|sp|A5CDI4|RNH2_ORITB RecName: Full=Ribonuclease HII; Short=RNase HII gi|146739927|emb|CAM79925.1| ribonuclease HII [Orientia tsutsugamushi str. Boryong] Length = 205 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 87/193 (45%), Positives = 123/193 (63%), Gaps = 5/193 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P+ +E + VAG+DE GRG LAGPVV AA++++ + + I DSK +S KRE Sbjct: 3 PNLNIEQDNASE---IVAGVDEAGRGPLAGPVVAAAVVVNQSIMIDDIKDSKVLSKSKRE 59 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 Y+KIT+S SI AS Q IDK+NI +AT A AV+NL +IP L+DG D Sbjct: 60 SCYDKITNSYYYSIGIASVQEIDKYNILEATKLACIRAVKNLAIIPTKVLVDGNMNFTD- 118 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + ++++GD I SI++ASI+AKVTRDR+M+I HK+YP YG++ + GY T H IK Sbjct: 119 -NRFISIVRGDQICYSISSASIVAKVTRDRIMQILHKEYPVYGWNQNCGYGTKLHIDAIK 177 Query: 190 EKGPSCIHRLTFR 202 G + HR++F+ Sbjct: 178 TYGQTIHHRVSFK 190 >gi|238650442|ref|YP_002916294.1| ribonuclease HII [Rickettsia peacockii str. Rustic] gi|238624540|gb|ACR47246.1| ribonuclease HII [Rickettsia peacockii str. Rustic] Length = 188 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 87/178 (48%), Positives = 113/178 (63%), Gaps = 2/178 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 VAGIDE GRG LAGPVV + +I+D NI GI DSKK+S KKRE LYE+ITS+ + + + Sbjct: 11 IVAGIDEAGRGPLAGPVVASTVIVDNANIITGIKDSKKLSKKKRELLYEQITSNYVWATA 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SH ID NI +AT A AV NL + P L+DG +D + ++I GD++SL Sbjct: 71 IISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKD--ERFVSIINGDNLSL 128 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SIAAASI+AKVTRDRLM ++P Y + + GY +H + I G S HR +FR Sbjct: 129 SIAAASIVAKVTRDRLMLDLSAEFPQYLWHKNSGYGIKEHIEAINIHGLSPYHRRSFR 186 >gi|302525179|ref|ZP_07277521.1| ribonuclease HII [Streptomyces sp. AA4] gi|302434074|gb|EFL05890.1| ribonuclease HII [Streptomyces sp. AA4] Length = 257 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 75/201 (37%), Positives = 116/201 (57%), Gaps = 4/201 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69 + L+ + + + PVAG+DE G GA AGP+VVA+ +L P + + DSK ++ K R+ Sbjct: 3 WGLQGALERRGLGPVAGVDEAGAGACAGPLVVASCVLRPGDAARLPELTDSKMLTAKARD 62 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +Y+++ A+ S+ + +D I L+ + AV L+ P L DG +P Sbjct: 63 RVYDRVLQRALDYSVIVIPSEQVDLLGIRVMNLEGMRRAVAGLRTHPGYVLTDGFPVP-G 121 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 +P AVIKGD SIAAAS++AKVTRDR+M H++ P YGFD H GY T+ H + Sbjct: 122 IPAPNVAVIKGDRSVASIAAASVLAKVTRDRIMAGLHEELPVYGFDVHKGYSTSDHLAAL 181 Query: 189 KEKGPSCIHRLTFRPLRNLSV 209 E GPS +HR ++ + +++ Sbjct: 182 SEHGPSPVHRWSYTNVATVAL 202 >gi|312139224|ref|YP_004006560.1| ribonuclease hii rnhb [Rhodococcus equi 103S] gi|311888563|emb|CBH47875.1| ribonuclease HII RnhB [Rhodococcus equi 103S] Length = 230 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 76/194 (39%), Positives = 111/194 (57%), Gaps = 4/194 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREEL 71 +E+ + + PVAG+DE GRGA AGP+VVAA +L P+ ++DSKK++ K R+EL Sbjct: 19 MESALVRSGLGPVAGVDEAGRGACAGPLVVAACVLGSKPHAALARLDDSKKLTEKVRDEL 78 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ S+ +D+ +H A ++ + AV L V P L DG +P LP Sbjct: 79 FPVIKRLALAWSVVEIPAAEVDRIGVHVANIEGMRRAVAGLTVAPGYVLTDGFRVP-GLP 137 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+ + IAAAS++AKV+RDR M + P YGF H GY TA H + E Sbjct: 138 APSLPVIGGDASAACIAAASVLAKVSRDRTMVALDDELPGYGFAGHKGYSTAVHTAALNE 197 Query: 191 KGPSCIHRLTFRPL 204 GP HR+++ + Sbjct: 198 LGPCREHRMSYANV 211 >gi|317059895|ref|ZP_07924380.1| ribonuclease HII [Fusobacterium sp. D12] gi|313685571|gb|EFS22406.1| ribonuclease HII [Fusobacterium sp. D12] Length = 210 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 73/182 (40%), Positives = 104/182 (57%), Gaps = 6/182 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + G+DE GRG LAGPVV AA +L + I DSKK++ KKRE L+ I + + I Sbjct: 21 IIGVDEAGRGPLAGPVVAAATLLKKYDASLEEIQDSKKLTEKKREALFSMIPNYFYVGIG 80 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQ----VIPRSALIDGRSIPEDLPCQAFAVIKGD 140 AS + I+ +NI AT A+ A+ L+ + L+DG + + A++KGD Sbjct: 81 RASVEEIEAYNILNATFLAMRRAIAQLEEQISIEDAIILVDGNFKIRECQRKQEAIVKGD 140 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC-IHRL 199 + SLSIA ASI+AKVTRD + K+YP+Y F+ H GY T H++ I G +HR Sbjct: 141 AKSLSIATASIMAKVTRDHELLELAKQYPEYHFEKHKGYGTKMHREQILTLGAIPGVHRN 200 Query: 200 TF 201 +F Sbjct: 201 SF 202 >gi|257462226|ref|ZP_05626643.1| ribonuclease HII [Fusobacterium sp. D12] Length = 209 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 73/182 (40%), Positives = 104/182 (57%), Gaps = 6/182 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + G+DE GRG LAGPVV AA +L + I DSKK++ KKRE L+ I + + I Sbjct: 20 IIGVDEAGRGPLAGPVVAAATLLKKYDASLEEIQDSKKLTEKKREALFSMIPNYFYVGIG 79 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQ----VIPRSALIDGRSIPEDLPCQAFAVIKGD 140 AS + I+ +NI AT A+ A+ L+ + L+DG + + A++KGD Sbjct: 80 RASVEEIEAYNILNATFLAMRRAIAQLEEQISIEDAIILVDGNFKIRECQRKQEAIVKGD 139 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC-IHRL 199 + SLSIA ASI+AKVTRD + K+YP+Y F+ H GY T H++ I G +HR Sbjct: 140 AKSLSIATASIMAKVTRDHELLELAKQYPEYHFEKHKGYGTKMHREQILTLGAIPGVHRN 199 Query: 200 TF 201 +F Sbjct: 200 SF 201 >gi|326575992|gb|EGE25915.1| ribonuclease HII [Moraxella catarrhalis CO72] Length = 248 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 86/208 (41%), Positives = 113/208 (54%), Gaps = 25/208 (12%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDP------------NNIPFGINDSKKISHKKREELY 72 P+ GIDEVGRG L G + V A+IL N +NDSKK+S K+RE+L+ Sbjct: 28 PIVGIDEVGRGTLFGNMTVGAVILPNELSGRFDEIDLTNTKISLLNDSKKLSEKRREQLF 87 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVE------NLQVIPRSALIDGRSI 125 + IT A+ +I ID+ NI++AT+ + A+E NL + LIDG + Sbjct: 88 DIITDLALDYAIVDVPSTIIDQINIYQATMLGMKIAIETIIIKNNLNEKNTTILIDGNQL 147 Query: 126 PE------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P + Q +A+IKGD+ SIA ASI+AKV RDRLM K YP Y D H GY Sbjct: 148 PSMDGSLGEHFHQIYAMIKGDATHSSIACASILAKVHRDRLMIQHAKSYPKYLLDKHKGY 207 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 TAKH+ I E G HR +F P+R L Sbjct: 208 LTAKHKAAILEYGILPEHRRSFSPIREL 235 >gi|329768911|ref|ZP_08260338.1| ribonuclease HII [Gemella sanguinis M325] gi|328836628|gb|EGF86286.1| ribonuclease HII [Gemella sanguinis M325] Length = 175 Score = 211 bits (539), Expect = 3e-53, Method: Composition-based stats. Identities = 73/167 (43%), Positives = 110/167 (65%), Gaps = 2/167 (1%) Query: 42 VVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKAT 100 + AA+IL ++ G+NDSKK+S KKREELY+KI + A+ +I +++ I+K+NI+ A Sbjct: 1 MAAAVILKKDSYFEGLNDSKKLSEKKREELYDKIRNEAVAYAICEVNNEEIEKYNIYNAA 60 Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160 A+ AVE L V P LID E+ P ++++KGD S+SIAAAS+IAKV RD L Sbjct: 61 RIAMQRAVEKLDVKPDFLLIDAMPF-ENYPIPNYSMVKGDEKSVSIAAASVIAKVYRDNL 119 Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 M+ KYP Y F+++ GY T KH + +++ G + IHR F P++++ Sbjct: 120 MKKYASKYPYYDFENNAGYGTKKHLEGLRKYGITPIHRRDFEPIKSM 166 >gi|318059574|ref|ZP_07978297.1| ribonuclease HII [Streptomyces sp. SA3_actG] gi|318075436|ref|ZP_07982768.1| ribonuclease HII [Streptomyces sp. SA3_actF] Length = 233 Score = 211 bits (539), Expect = 3e-53, Method: Composition-based stats. Identities = 74/202 (36%), Positives = 108/202 (53%), Gaps = 2/202 (0%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R VAGIDEVGRGA AGPV V A + P G+ DSK ++ K Sbjct: 4 EAPTHSVERSLRATTGAKVVAGIDEVGRGAWAGPVSVCAAVTGLRRPPEGLTDSKLLTPK 63 Query: 67 KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R L ++ S+ AS + ID+ + A A A++ L V P ++DG Sbjct: 64 RRVALVVELERWVTAHSLGHASPEEIDELGMTAALRLAAGRALDGLPVRPDWVILDGNHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P VIKGD +S+AAAS++AKV RDRLM ++ D+ F ++ GYP+ H+ Sbjct: 124 YLGAPWNVRTVIKGDQSCVSVAAASVLAKVARDRLMAELGAQHEDFAFAANAGYPSPAHK 183 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 + E+GP+ HRL++ L + Sbjct: 184 TALAERGPTPYHRLSWSYLDAM 205 >gi|256784763|ref|ZP_05523194.1| ribonuclease HII [Streptomyces lividans TK24] gi|289768650|ref|ZP_06528028.1| ribonuclease HII [Streptomyces lividans TK24] gi|289698849|gb|EFD66278.1| ribonuclease HII [Streptomyces lividans TK24] Length = 233 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 73/202 (36%), Positives = 112/202 (55%), Gaps = 2/202 (0%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R +AG+DEVGRGA AGPV V A I P G+ DSK ++ K Sbjct: 4 EPPTHTVERSLRATTGAKIIAGVDEVGRGAWAGPVTVCAAITGLRRPPVGLTDSKLLTIK 63 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R EL ++ + ++ AS + ID + A A A+E L V P + ++DG+ Sbjct: 64 RRTELEVELRTWVTSYALGHASPEEIDAMGMTAALRLAAVRALETLPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + VIKGD +++AAAS++AKV RD++M + D+GF + GYP+ H+ Sbjct: 124 YLGAPWRVRTVIKGDQSCIAVAAASVLAKVQRDKMMAELGVDHADFGFADNAGYPSPVHK 183 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 ++E+GP+ HRL++ L L Sbjct: 184 AALEERGPTPHHRLSWAYLDAL 205 >gi|315637651|ref|ZP_07892857.1| ribonuclease HII [Arcobacter butzleri JV22] gi|315478105|gb|EFU68832.1| ribonuclease HII [Arcobacter butzleri JV22] Length = 192 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 77/187 (41%), Positives = 105/187 (56%), Gaps = 7/187 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M + GIDE GRG LAGP+VVA +IL + G+NDSK +S KKRE+L+++I + Sbjct: 1 MKNLCGIDEAGRGPLAGPLVVAGVILLED--IVGLNDSKVLSEKKREKLFDEIKEKSKHH 58 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA-FAVIKGDS 141 I + + ID+ I +I +ENL+ S L+DG + + Q IK D+ Sbjct: 59 IVFSDAKLIDEKGISFCLKSSILEIIENLKEFSNSFLMDGNT---NFGIQILQKEIKADA 115 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++AASI+AKV+RDR M YP Y F H GY T H + IKE G S IHR TF Sbjct: 116 KYAQVSAASILAKVSRDRFMDEISPLYPKYDFHKHKGYGTKAHIEAIKEFGRSDIHRHTF 175 Query: 202 RPLRNLS 208 + L+ L Sbjct: 176 K-LKALG 181 >gi|189345575|ref|YP_001942104.1| ribonuclease HII [Chlorobium limicola DSM 245] gi|189339722|gb|ACD89125.1| Ribonuclease H [Chlorobium limicola DSM 245] Length = 299 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 78/202 (38%), Positives = 112/202 (55%), Gaps = 8/202 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHKK 67 + E +N + GIDE GRG LAGPVV AA++ P +NDSKK+S Sbjct: 98 DYEYPFW-RNTELLCGIDEAGRGPLAGPVVAAAVVFPRWFTPETDRLSLLNDSKKLSPGL 156 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL I ++A+ + + + ID+ NI AT+ A+ +AV +L P L+DG Sbjct: 157 RTELASSIKAAALHWATALIEPETIDRINIFHATMLAMNNAVTSLSETPELLLVDGNRFR 216 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++KGD+ SIAAAS++AK RD +M+ YP YGF+ H GYPT +H + Sbjct: 217 PLLPIPYETIVKGDAKVFSIAAASVLAKTCRDTIMKEYALLYPQYGFEHHFGYPTGEHIR 276 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 + + G S IHR +F+ L+ L Sbjct: 277 AVAQYGRSPIHRKSFK-LKQLG 297 >gi|111114868|ref|YP_709486.1| ribonuclease H [Borrelia afzelii PKo] gi|122956434|sp|Q0SPB8|RNH2_BORAP RecName: Full=Ribonuclease HII; Short=RNase HII gi|110890142|gb|ABH01310.1| ribonuclease H [Borrelia afzelii PKo] Length = 181 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 106/180 (58%), Gaps = 1/180 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + GIDEVGRG + GP++ AA++ N ++DSKK++ +KRE L I ++ + Sbjct: 2 ICGIDEVGRGCIFGPILSAAVVFKKKPNFIKELDDSKKLTKEKREYLSSLILENSYYAFG 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S+ I+K NIH A+L A+ A ENL++ IDG+ +P+ A+IKGDSI Sbjct: 62 EISNITIEKINIHNASLLAMQTAYENLKLNCNLVFIDGKFVPKISAKNVKAIIKGDSIID 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR F+ + Sbjct: 122 EIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFKLI 181 >gi|33519750|ref|NP_878582.1| ribonuclease HII [Candidatus Blochmannia floridanus] gi|39932315|sp|Q7VRD2|RNH2_BLOFL RecName: Full=Ribonuclease HII; Short=RNase HII gi|33504095|emb|CAD83356.1| ribonuclease HII [Candidatus Blochmannia floridanus] Length = 205 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 77/197 (39%), Positives = 109/197 (55%), Gaps = 5/197 (2%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISHKKREELY 72 K VAG+DEVG G+L G VV +A+++ D + G+ DSK +S+KKR Sbjct: 5 KYFLSKKATIVAGVDEVGCGSLVGAVVASAVLMLYPDQEQLFSGLIDSKALSNKKRLRFC 64 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLP 130 I ++ SI + ID+ NI +A L +I A+ NL +IP LIDG+ P + Sbjct: 65 NYIQKYSLHWSIGMVNVTEIDQLNIFQARLLSIKRAICNLSMIPDLVLIDGKHAPSLNKN 124 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +KGDS I+AASIIAKVTRD+ M + H +YP YGF + GY T H + + Sbjct: 125 ILYQCFVKGDSRIPVISAASIIAKVTRDQAMMMLHTQYPKYGFHRNKGYATVFHLKQLDL 184 Query: 191 KGPSCIHRLTFRPLRNL 207 GP+ HR TF P++ + Sbjct: 185 YGPTIYHRKTFAPVKYM 201 >gi|145218837|ref|YP_001129546.1| ribonuclease H [Prosthecochloris vibrioformis DSM 265] gi|189043641|sp|A4SC35|RNH2_PROVI RecName: Full=Ribonuclease HII; Short=RNase HII gi|145205001|gb|ABP36044.1| RNase HII [Chlorobium phaeovibrioides DSM 265] Length = 205 Score = 211 bits (538), Expect = 4e-53, Method: Composition-based stats. Identities = 76/208 (36%), Positives = 105/208 (50%), Gaps = 20/208 (9%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAI----------ILDPNNIPFG-INDSK 61 + E + M + GIDE GRG LAGP P G +NDSK Sbjct: 4 DYEEQLWNS-MERICGIDEAGRGPLAGP------VVAAAVVFPRWFRPGKGILGRMNDSK 56 Query: 62 KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K+S R E+ I +A+ S+S Q ID+ NI AT+ A+ AV L + P L+ Sbjct: 57 KLSPSLRREMAPAIQDAALAWSVSVVDAQTIDRINILSATMLAMNRAVGGLGLTPDMLLV 116 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG + P ++ GD+ SIAAAS++AK RD +M + YP+YGF H GYP Sbjct: 117 DGNRFSPETPVAYRTLVGGDAYIYSIAAASVLAKTARDAIMSSYDRDYPEYGFARHAGYP 176 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNLS 208 TA H I++ G IHR +F+ +R L+ Sbjct: 177 TAMHISAIRQHGRCPIHRFSFK-VRRLN 203 >gi|167949995|ref|ZP_02537069.1| ribonuclease HII [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 162 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 77/158 (48%), Positives = 104/158 (65%), Gaps = 2/158 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG LAGPVV AA+ILDP G+ DSKK+S K+RE+L E+I + ++ ++ Sbjct: 6 FVAGVDEVGRGPLAGPVVAAAVILDPAQPIEGLADSKKLSEKRREQLAEQIRTQSLAWAL 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI +A+L A+ AVE L + P+ L+DG+ P+ L C A+I GDS Sbjct: 66 GRAEVEEIDQINILQASLLAMRRAVEALALTPQRVLVDGKHAPQ-LACPVEAIIGGDSSV 124 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 +I+AASIIA V RDR M + +P YG H GYPT Sbjct: 125 EAISAASIIANVARDREMVELDQHHPGYGLARHKGYPT 162 >gi|332638611|ref|ZP_08417474.1| ribonuclease HII [Weissella cibaria KACC 11862] Length = 254 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 78/199 (39%), Positives = 108/199 (54%), Gaps = 4/199 (2%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + E + + +AG+DEVGRG LAGPVV AA+++D ++DSK++S K R Sbjct: 56 QARLSFERDAWSEGL-VLAGVDEVGRGPLAGPVVAAAVVIDDQFDLLAVHDSKQLSEKAR 114 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 L I + + ID NI++A+ A+ A+ENL V LID ++ Sbjct: 115 LALDAAIKEEVVAFAFGVVDAAAIDTLNIYEASRVAMKQAIENLSVQVDGLLIDAMTV-- 172 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 DLP +IKGD S+SI AASI+AK RD LM YP YGFD + GY TA+H Sbjct: 173 DLPLPQEKLIKGDDRSISIGAASILAKNFRDDLMAAYAVDYPGYGFDHNAGYGTAEHLAG 232 Query: 188 IKEKGPSCIHRLTFRPLRN 206 + G + IHR TF P++ Sbjct: 233 LAAYGVTPIHRRTFAPVKQ 251 >gi|226227701|ref|YP_002761807.1| ribonuclease HII [Gemmatimonas aurantiaca T-27] gi|226090892|dbj|BAH39337.1| ribonuclease HII [Gemmatimonas aurantiaca T-27] Length = 228 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 70/194 (36%), Positives = 113/194 (58%), Gaps = 7/194 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELY 72 +E +R + + G+DEVGRG LAGPVV AI++ + G++DSK++ H+ R L Sbjct: 7 IERTLRAQYGSLLVGVDEVGRGPLAGPVVACAIVMPADRRAIAGVDDSKRLDHRTRVTLA 66 Query: 73 EKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAV----ENLQVIPRSALIDGRSIPE 127 +I A+ S+ +AS + +D+ NI+ AT+ A+ A+ + L P ++DG+ + Sbjct: 67 ARIRDHALALSLGAASAREVDRLNIYHATVLAMQRALARIPQRLGAEPHHVVVDGKPL-R 125 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L AV+KGD+ IA ASI+AKVTRDRLM +++ Y ++ + GY T +H+ Sbjct: 126 TLGVVHTAVVKGDAKCYGIACASIVAKVTRDRLMTALAQRHGHYAWERNAGYGTTQHRDG 185 Query: 188 IKEKGPSCIHRLTF 201 I + G + HR +F Sbjct: 186 ISQHGLTAHHRRSF 199 >gi|224534867|ref|ZP_03675436.1| ribonuclease HII [Borrelia spielmanii A14S] gi|224513807|gb|EEF84132.1| ribonuclease HII [Borrelia spielmanii A14S] Length = 181 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 107/180 (59%), Gaps = 1/180 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + GIDEVGRG + GP++ AA++ N ++DSKK+ +KRE L I ++ + + Sbjct: 2 ICGIDEVGRGCIFGPILSAAVVFKKKPNFIKELDDSKKLKKEKREYLSSLILENSYYAFA 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S+ I+K NIH A+L A+ A ENL++ +DG+ +P+ A+IKGDSI Sbjct: 62 EISNITIEKINIHNASLLAMQTAYENLKLNCSLVFVDGKFVPKITAKTVKAIIKGDSIID 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR +F+ + Sbjct: 122 EIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKHGVLSLHRKSFKLI 181 >gi|325846098|ref|ZP_08169192.1| ribonuclease HII [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481691|gb|EGC84726.1| ribonuclease HII [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 210 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 86/200 (43%), Positives = 121/200 (60%), Gaps = 9/200 (4%) Query: 8 ERPHF-----ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62 ++P + E++ + EK +AGIDEVGRG LAGPVV A+I+ ++ GI DSKK Sbjct: 2 KKPRYSEFNDEIKNEIHEK-YDLIAGIDEVGRGPLAGPVVACAVIMKKDSHIEGITDSKK 60 Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 +S KK +ELY KI +I S A++ IDK NI +AT A+ A+E L+ P+ LID Sbjct: 61 LSKKKMKELYGKIIDDSISYSFGYANNILIDKINIKEATKLAMKDALEGLEKTPQIVLID 120 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 I D+ + ++KGD +I+ ASI+AKV RD++M K YP Y F+++ GY T Sbjct: 121 AERIDTDI--KQLNIVKGDLYEYAISCASILAKVRRDKIMENFSKIYPYYSFETNAGYGT 178 Query: 182 AKHQQVIKEKGPSCIHRLTF 201 KH Q I++ G IHR TF Sbjct: 179 KKHYQGIEKYGECPIHRRTF 198 >gi|269127623|ref|YP_003300993.1| Ribonuclease H [Thermomonospora curvata DSM 43183] gi|268312581|gb|ACY98955.1| Ribonuclease H [Thermomonospora curvata DSM 43183] Length = 232 Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats. Identities = 79/200 (39%), Positives = 114/200 (57%), Gaps = 4/200 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69 + LE ++ PVAG+DE GRGA AGP+VVAA+IL + G+ DSK ++ ++RE Sbjct: 16 YGLERALQHAGFSPVAGVDEAGRGACAGPLVVAAVILPSGRRALIDGLTDSKLLTARRRE 75 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 ELY +I A+ + ID+ +H+ + + A+ L+V P L DG +P Sbjct: 76 ELYAQIVERAVAWATVIIPRHDIDRLGLHQCNITGMRRALAQLEVRPGYVLSDGFRVP-G 134 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L AV KGD ++ +AAAS++AKVTRDRLM H++YP YGF H GY T +H + Sbjct: 135 LDVPGLAVPKGDCVAACVAAASVVAKVTRDRLMVELHERYPQYGFAVHKGYVTREHTAAL 194 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 GP HRL+F + + Sbjct: 195 SAHGPCPEHRLSFVNVARVG 214 >gi|292670872|ref|ZP_06604298.1| ribonuclease HII [Selenomonas noxia ATCC 43541] gi|292647493|gb|EFF65465.1| ribonuclease HII [Selenomonas noxia ATCC 43541] Length = 251 Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats. Identities = 88/197 (44%), Positives = 116/197 (58%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E E VAG+DE GRG LAGPV VAA++L +NDSKK+SH REEL Sbjct: 52 YTYERAAIEAGHLIVAGVDEAGRGPLAGPVAVAAVVLPMECHLSHLNDSKKLSHAVREEL 111 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + +IT A IS + ID+ NI +AT +Y A+ L P LID +P+ L Sbjct: 112 FAQITEQAFSYHISLIDAETIDRMNILQATRMGMYEAIAALTPAPDEVLIDAVELPK-LS 170 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + ++IKGD+ S SIAAASI+AKVTRD LM +YP YGF H GY T +H I++ Sbjct: 171 MSSKSIIKGDAKSASIAAASILAKVTRDHLMEQYDTEYPHYGFAKHKGYGTQEHIDAIRK 230 Query: 191 KGPSCIHRLTFRPLRNL 207 G IHR +F P+R++ Sbjct: 231 YGVCPIHRKSFEPIRSM 247 >gi|302338381|ref|YP_003803587.1| ribonuclease H [Spirochaeta smaragdinae DSM 11293] gi|301635566|gb|ADK80993.1| Ribonuclease H [Spirochaeta smaragdinae DSM 11293] Length = 190 Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats. Identities = 70/180 (38%), Positives = 99/180 (55%), Gaps = 4/180 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 GIDE GRG LAGPV AA+IL ++DSKK+S KR ++I SS + Sbjct: 7 CGIDEAGRGPLAGPVTAAAVILPAAFPVGLLDDSKKLSPAKRNIALKEILSSCSYGVGWV 66 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL----IDGRSIPEDLPCQAFAVIKGDSI 142 + ID+ NIH A+L A+ A E + R+ + +DG+ P+ + A+I+GD Sbjct: 67 WPEEIDRINIHNASLLAMKRAFEAIDQKARTLVQIVQVDGKFPPKLDHPRIEAIIRGDQT 126 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I AASI+AK RDR M P + F+ H GYPT H+++ ++ G S IHR +FR Sbjct: 127 HPHIQAASILAKEARDRWMIRYSWIEPAWHFERHKGYPTKLHRELCRQYGLSEIHRKSFR 186 >gi|88658621|ref|YP_507735.1| ribonuclease HII [Ehrlichia chaffeensis str. Arkansas] gi|123492872|sp|Q2GFP8|RNH2_EHRCR RecName: Full=Ribonuclease HII; Short=RNase HII gi|88600078|gb|ABD45547.1| ribonuclease HII [Ehrlichia chaffeensis str. Arkansas] Length = 209 Score = 210 bits (536), Expect = 7e-53, Method: Composition-based stats. Identities = 85/200 (42%), Positives = 116/200 (58%), Gaps = 6/200 (3%) Query: 9 RPHFELEAM---VREKNMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKI 63 P F +E + + G+DEVG G+LAGPVV AA+ N+I + I DSKK+ Sbjct: 1 MPDFSIENEISKLINNKHCTIVGVDEVGYGSLAGPVVSAAVFFPKHDNHITYNIQDSKKL 60 Query: 64 SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 + KKR E+Y IT SI A ID++NI AT A+ A+ L ++DG Sbjct: 61 TPKKRLEIYNIITPMVKWSIGLAEVHEIDQYNILNATHIAMQRALRGLNSNIDYVIVDGN 120 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +PE LP A AV+ GD+IS+SIAAASIIAKVTRD+LM H ++P Y ++ + GY T Sbjct: 121 KVPE-LPWNAKAVVDGDNISISIAAASIIAKVTRDKLMETLHIQFPQYNWNKNKGYGTKH 179 Query: 184 HQQVIKEKGPSCIHRLTFRP 203 H + + + G + HR TF P Sbjct: 180 HLESLHKYGKTIHHRNTFAP 199 >gi|261417089|ref|YP_003250772.1| Ribonuclease H [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373545|gb|ACX76290.1| Ribonuclease H [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326679|gb|ADL25880.1| ribonuclease HII [Fibrobacter succinogenes subsp. succinogenes S85] Length = 247 Score = 210 bits (536), Expect = 8e-53, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 110/222 (49%), Gaps = 34/222 (15%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 +N V GIDEVGRG LAGPVV A +L + +NDSKK+S KRE +++ + Sbjct: 23 RKFAAENSAIVVGIDEVGRGPLAGPVVACAAVLKSPDALLTLNDSKKLSRPKREAMFDAV 82 Query: 76 T-SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ---------------------V 113 + A +I+SAS + ID+ NI +A A+ A++ L V Sbjct: 83 KDACACYAIASASVEEIDEINILEADFLAMRRALQALGFPGLNESAPEIPIEVKGSLNDV 142 Query: 114 IPRSAL-----------IDGRSIPEDLPCQ-AFAVIKGDSISLSIAAASIIAKVTRDRLM 161 +P S +DG +P + ++KGD SI+AASI+AKV RDR M Sbjct: 143 MPDSVPASALSSNVLIAVDGNLKIRGVPAENQMPIVKGDGRIASISAASILAKVFRDRYM 202 Query: 162 RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + YP YGFD H GY T H I+ +G S HR +F P Sbjct: 203 DKLEELYPGYGFDKHAGYGTKAHLDAIRRQGFSPAHRKSFHP 244 >gi|319955897|ref|YP_004167160.1| rnase hii [Nitratifractor salsuginis DSM 16511] gi|319418301|gb|ADV45411.1| RNase HII [Nitratifractor salsuginis DSM 16511] Length = 205 Score = 210 bits (536), Expect = 8e-53, Method: Composition-based stats. Identities = 71/190 (37%), Positives = 104/190 (54%), Gaps = 7/190 (3%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 E+ + + GIDE GRG LAGP+VVA +IL G+ DSK++S ++RE+LY +I + Sbjct: 16 EEEAFTLCGIDEAGRGPLAGPLVVAGVIL--LRRINGLQDSKRLSAQEREKLYGRIVERS 73 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA-VIK 138 + ID I + A+ VE L L DG S A ++K Sbjct: 74 RYHLVIIEASRIDDWGISRCLRKALEEIVEVLGGEGVHFLFDGNS---RYGVPGIATMVK 130 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 D ++AASI+AKVTRDR+M ++YP+YGF+ H GY TA+H + I+ G IHR Sbjct: 131 ADGKVKEVSAASILAKVTRDRIMEALAREYPEYGFEEHKGYGTARHLEAIERFGCCPIHR 190 Query: 199 LTFRPLRNLS 208 +F+ ++ S Sbjct: 191 RSFQ-VKKFS 199 >gi|325673470|ref|ZP_08153161.1| ribonuclease HII [Rhodococcus equi ATCC 33707] gi|325555491|gb|EGD25162.1| ribonuclease HII [Rhodococcus equi ATCC 33707] Length = 212 Score = 210 bits (536), Expect = 8e-53, Method: Composition-based stats. Identities = 76/194 (39%), Positives = 111/194 (57%), Gaps = 4/194 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREEL 71 +E+ + + PVAG+DE GRGA AGP+VVAA +L P+ ++DSKK++ K R+EL Sbjct: 1 MESALVRSGLGPVAGVDEAGRGACAGPLVVAACVLGSKPHAALARLDDSKKLTEKVRDEL 60 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ S+ +D+ +H A ++ + AV L V P L DG +P LP Sbjct: 61 FPVIKRLAVAWSVVEIPAAEVDRIGVHVANIEGMRRAVAGLTVAPGYVLTDGFRVP-GLP 119 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+ + IAAAS++AKV+RDR M + P YGF H GY TA H + E Sbjct: 120 APSLPVIGGDASAACIAAASVLAKVSRDRTMVALDDELPGYGFAGHKGYSTAVHTAALNE 179 Query: 191 KGPSCIHRLTFRPL 204 GP HR+++ + Sbjct: 180 LGPCREHRMSYANV 193 >gi|85373281|ref|YP_457343.1| ribonuclease HII [Erythrobacter litoralis HTCC2594] gi|122545127|sp|Q2NCP5|RNH2_ERYLH RecName: Full=Ribonuclease HII; Short=RNase HII gi|84786364|gb|ABC62546.1| ribonuclease HII [Erythrobacter litoralis HTCC2594] Length = 212 Score = 210 bits (536), Expect = 8e-53, Method: Composition-based stats. Identities = 72/196 (36%), Positives = 104/196 (53%), Gaps = 23/196 (11%) Query: 24 WPVAGIDEVGRGALAGP-------VVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 V G+DE GRG LAGP + + P G++DSKK++ K+R L E I Sbjct: 18 GCVFGVDEAGRGPLAGPVVAAAVVL--------GDAYPKGLDDSKKLTAKRRAVLDEDIR 69 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI----PRSALIDGRSIPED---- 128 + + + ID NI AT+ A+ AV+ L P LIDG P Sbjct: 70 KTCGWGVGVVDVEEIDTLNILGATMRAMSLAVQGLAAKLGGDPDMVLIDGNLTPHGRCDL 129 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 +A A+I GD I +I+AASI+AK RDR+M A + YP+YG+ S+ GY TA+H + + Sbjct: 130 WQWEAQAIIGGDGIEPAISAASIVAKEWRDRIMTEAAQDYPEYGWLSNKGYGTAQHLEAL 189 Query: 189 KEKGPSCIHRLTFRPL 204 + GP+ +HR +F P+ Sbjct: 190 RLHGPTPLHRRSFAPV 205 >gi|300780923|ref|ZP_07090777.1| ribonuclease H [Corynebacterium genitalium ATCC 33030] gi|300532630|gb|EFK53691.1| ribonuclease H [Corynebacterium genitalium ATCC 33030] Length = 215 Score = 210 bits (536), Expect = 8e-53, Method: Composition-based stats. Identities = 76/194 (39%), Positives = 106/194 (54%), Gaps = 4/194 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREEL 71 E + + + PVAGIDE GRGA GPV +AA +L IP G+ DSKK++ KR L Sbjct: 10 YEVALSKAGLGPVAGIDEAGRGACFGPVTIAACVLPDKPIPALDGLTDSKKLTPAKRASL 69 Query: 72 YEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I +S+ + +D+ IH A LD AV L + P L+D +P L Sbjct: 70 YDAILTSSDAHCVVHIPAAEVDRRGIHNANLDGARLAVAGLGLAPGFTLVDAFRVP-GLT 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD + IAAAS++AKV+RDRL+ + +PDYG +SH GY TA H ++ Sbjct: 129 MPQLPIIGGDYTARCIAAASVLAKVSRDRLITKMAETFPDYGLESHKGYGTAAHMDAVRR 188 Query: 191 KGPSCIHRLTFRPL 204 G S HR T+ + Sbjct: 189 HGASAEHRYTYANV 202 >gi|310831397|ref|YP_003970040.1| putative ribonuclease HII [Cafeteria roenbergensis virus BV-PW1] gi|309386581|gb|ADO67441.1| putative ribonuclease HII [Cafeteria roenbergensis virus BV-PW1] Length = 202 Score = 210 bits (536), Expect = 9e-53, Method: Composition-based stats. Identities = 65/191 (34%), Positives = 99/191 (51%), Gaps = 10/191 (5%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 G+DE GRG GPV A++ N + DSKK++ KKR LY I + I A Sbjct: 11 VGLDEAGRGCWWGPVTAGAVMWPENLTHPYLTDSKKLTEKKRNVLYTWILEKCLCGIGEA 70 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQ-------VIPRSALIDG-RSIPEDLPCQAFAVIK 138 + ID I +AT A+ A++NL+ + + +IDG +D P +++K Sbjct: 71 TSYEIDTIGILEATKLAMNRAIKNLEKNITMSSIKINNLIIDGINWKEKDFPYPITSIVK 130 Query: 139 GDSISLSIAAASIIAKVTRDRLM--RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 GD SIAAAS++AKV RD + + Y D H GY T H++++ + GP+ Sbjct: 131 GDGKYYSIAAASVLAKVYRDNYCYKKALEDNFKTYLLDKHKGYGTKIHKEMLDKYGPTEE 190 Query: 197 HRLTFRPLRNL 207 HR +F+P+ N+ Sbjct: 191 HRHSFKPICNM 201 >gi|216264047|ref|ZP_03436041.1| ribonuclease HII [Borrelia afzelii ACA-1] gi|215980091|gb|EEC20913.1| ribonuclease HII [Borrelia afzelii ACA-1] Length = 181 Score = 210 bits (536), Expect = 9e-53, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 107/180 (59%), Gaps = 1/180 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + GIDEVGRG + GP++ AA++ N ++DSKK++ +KRE L I ++ + + Sbjct: 2 ICGIDEVGRGCIFGPILSAAVVFKKKPNFIKELDDSKKLTKEKREYLSSLILENSYYAFA 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S+ I+K NIH A+L A+ A ENL++ IDG+ +P+ A+IKGDSI Sbjct: 62 EISNITIEKINIHNASLLAMQTAYENLKLNCNLVFIDGKFVPKISAKNVKAIIKGDSIID 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR F+ + Sbjct: 122 EIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFKLI 181 >gi|51598308|ref|YP_072496.1| ribonuclease HII [Borrelia garinii PBi] gi|73917600|sp|Q662W7|RNH2_BORGA RecName: Full=Ribonuclease HII; Short=RNase HII gi|51572879|gb|AAU06904.1| ribonuclease H [Borrelia garinii PBi] Length = 181 Score = 210 bits (536), Expect = 9e-53, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 106/180 (58%), Gaps = 1/180 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + GIDEVGRG + GPV+ AA++ N ++DSKK+ +KRE L I ++ + + Sbjct: 2 ICGIDEVGRGCIFGPVLSAAVVFKKKPNFIKELDDSKKLKKEKREYLSSLILENSYYAFA 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S+ I+K NIH ATL A+ A ENL++ +DG+ +P+ A+IKGDSI Sbjct: 62 EISNIIIEKINIHNATLLAMQTAYENLKLNCSLVFVDGKFVPKITAKTVKAIIKGDSIID 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR F+ + Sbjct: 122 EIKAASIIAKVKRDKLMDEYDKIYPLYLLRKNKGYPTKEHKNAIKKYGVLSLHRRNFKLI 181 >gi|311739721|ref|ZP_07713556.1| ribonuclease HII [Corynebacterium pseudogenitalium ATCC 33035] gi|311305537|gb|EFQ81605.1| ribonuclease HII [Corynebacterium pseudogenitalium ATCC 33035] Length = 213 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 71/201 (35%), Positives = 103/201 (51%), Gaps = 4/201 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHK 66 + E + + + PVAG+DE GRGA GP+ +AA ++ I + DSKK++ K Sbjct: 5 KQRRTYEVALSKAGLGPVAGVDEAGRGACCGPITIAACVMPDRPIKELAQLTDSKKLTPK 64 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +RE+L+ I A+ S+ IDK I A + + AV L+ P L D I Sbjct: 65 QREKLFPLIKDKAVDWSVVHIGAGDIDKRGIQHANISGMRRAVARLEARPGYVLTDALFI 124 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P L +I GD+ + IAAAS++AKV+RD LM +YP YG SH GY T H+ Sbjct: 125 P-GLTQPHLPIIGGDAAARCIAAASVLAKVSRDHLMHELDVRYPGYGLASHKGYGTKAHE 183 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 I G HR+++ +R Sbjct: 184 AAIAALGACPEHRMSYENVRR 204 >gi|319779558|ref|YP_004130471.1| Ribonuclease HII [Taylorella equigenitalis MCE9] gi|317109582|gb|ADU92328.1| Ribonuclease HII [Taylorella equigenitalis MCE9] Length = 212 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 74/203 (36%), Positives = 113/203 (55%), Gaps = 21/203 (10%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 V G+DE GRG LAG V A++L + G+ DSKK+S KKREEL I +++ + Sbjct: 5 LVIGVDEAGRGPLAGDVFAGAVLLG-SPEIVGLTDSKKLSPKKREELEVLIKGASVSYFV 63 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVEN-LQVIP-------RSALIDGRSIP--------- 126 + ++ + ID NI ATL A+ A++ L +P +IDG IP Sbjct: 64 ACSTVEEIDSLNILNATLLAMNRAIDGVLGALPPKYQSSQIKVIIDGNQIPNPLKREGIF 123 Query: 127 --EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + + + IKGD ++ +++AASI+AK RDR + H+ P Y F+ H GY TA H Sbjct: 124 DYQGFKIEVKSQIKGDLLTPTVSAASILAKTARDRHILQLHESVPQYKFNEHKGYGTALH 183 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 ++I++ GPS HR +F P+++L Sbjct: 184 LEMIRKYGPSIFHRKSFNPVKSL 206 >gi|21224156|ref|NP_629935.1| ribonuclease HII [Streptomyces coelicolor A3(2)] gi|7227921|sp|O69989|RNH2_STRCO RecName: Full=Ribonuclease HII; Short=RNase HII gi|3036877|emb|CAA18510.1| probable ribonuclease HII [Streptomyces coelicolor A3(2)] Length = 233 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 72/202 (35%), Positives = 111/202 (54%), Gaps = 2/202 (0%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R +AG+DEVGRGA AGPV V A I P G+ DSK ++ K Sbjct: 4 EPPTHTVERSLRATTGAKIIAGVDEVGRGAWAGPVTVCAAITGLRRPPVGLTDSKLLTIK 63 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R EL ++ + ++ AS + ID + A A A+ L V P + ++DG+ Sbjct: 64 RRTELEVELRTWVTSYALGHASPEEIDAMGMTAALRLAAVRALGTLPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + VIKGD +++AAAS++AKV RD++M + D+GF + GYP+ H+ Sbjct: 124 YLGAPWRVRTVIKGDQSCIAVAAASVLAKVQRDKMMAELGVDHADFGFADNAGYPSPVHK 183 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 ++E+GP+ HRL++ L L Sbjct: 184 AALEERGPTPHHRLSWAYLDAL 205 >gi|86748206|ref|YP_484702.1| ribonuclease HII [Rhodopseudomonas palustris HaA2] gi|123293064|sp|Q2J169|RNH2_RHOP2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|86571234|gb|ABD05791.1| RNase HII [Rhodopseudomonas palustris HaA2] Length = 284 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 128/195 (65%), Gaps = 1/195 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + ++ +WPVAG DE GRG LAGPVV AA++LDP +P G++DSK++S +KRE Sbjct: 57 PSFRRERALIKRGIWPVAGCDEAGRGPLAGPVVAAAVVLDPKRVPKGLDDSKRLSAEKRE 116 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 EL+E+I +SA +S++ AS + I++ NI +A+L A+ AV L +P+ +DGR Sbjct: 117 ELFEEICASAQVSVACASPERINRDNILRASLWALTRAVHALPDLPQHVFVDGRD-RLAT 175 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C++ AVI GD + SIAAASIIAKVTRDRLM + P YGF+ H GY +H + Sbjct: 176 RCESEAVIGGDGLIASIAAASIIAKVTRDRLMCRLAQDCPGYGFEQHKGYGVPEHLAALA 235 Query: 190 EKGPSCIHRLTFRPL 204 GPS HR F P+ Sbjct: 236 RLGPSVHHRRFFAPV 250 >gi|261855823|ref|YP_003263106.1| ribonuclease H [Halothiobacillus neapolitanus c2] gi|261836292|gb|ACX96059.1| Ribonuclease H [Halothiobacillus neapolitanus c2] Length = 216 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 84/215 (39%), Positives = 123/215 (57%), Gaps = 18/215 (8%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 +P+ P FE++ AG+DE GRG LAGPVV AAI+L P++ G+NDSKK++ Sbjct: 1 MPQLPLFEMQTP-----GLIYAGVDEAGRGPLAGPVVAAAIVLYPDDPIVGVNDSKKLTE 55 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL-------QVIPRS 117 ++R +L+++IT A +I+ A+ ID NI +A+L A+ AV + Sbjct: 56 RQRVKLFDEITRRAQSFAIAEATVHEIDTINILQASLLAMRRAVMAVYDQMKTQGQTLGR 115 Query: 118 ALIDGRSIPEDLP-----CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 +DG P+ + A+I GD+ +IA+ASI+AKVTRDRLM K YP Y Sbjct: 116 IHVDGNRCPDLNDPDAGFMECHALIGGDARDAAIASASILAKVTRDRLMLDMDKLYPQYE 175 Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 F H GYPTA+H+ ++ E G HR +F P+R + Sbjct: 176 FAKHKGYPTARHRDLLIEFGACPEHRSSFAPVRAI 210 >gi|110598302|ref|ZP_01386577.1| Ribonuclease H [Chlorobium ferrooxidans DSM 13031] gi|110340110|gb|EAT58610.1| Ribonuclease H [Chlorobium ferrooxidans DSM 13031] Length = 205 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 74/210 (35%), Positives = 114/210 (54%), Gaps = 24/210 (11%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-------------DPNNIPFGIND 59 E + + + V GIDE GRG LAGP +I +ND Sbjct: 4 SYEWPLWQTS-EFVCGIDEAGRGPLAGP--------VVAAAVVFSRWFSPEGSILEKLND 54 Query: 60 SKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 SKK+S + REEL I ++A+ +++ + ID+ NI +AT+ A+ ++E L ++P Sbjct: 55 SKKLSSRVREELAPAIKAAALYWAVTEIEPEIIDRINIFQATMLAMNRSIEALGMLPELL 114 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 L+DG LP ++KGD+ SIAAAS++AK RD +M + +P+YGFD H G Sbjct: 115 LVDGNRFRPHLPIPYETIVKGDAKVFSIAAASVLAKTRRDEIMTACSRSWPEYGFDRHFG 174 Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPLRNLS 208 Y TA+H + I++ G +HR++FR L+ L Sbjct: 175 YATAEHVRAIRQYGRCPLHRVSFR-LKELG 203 >gi|85707870|ref|ZP_01038936.1| ribonuclease HII [Erythrobacter sp. NAP1] gi|85689404|gb|EAQ29407.1| ribonuclease HII [Erythrobacter sp. NAP1] Length = 206 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 76/193 (39%), Positives = 113/193 (58%), Gaps = 9/193 (4%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + G+DE GRG LAGPVV AA++L +P GI DSKK+S K+R L E++ + +++ Sbjct: 14 IIIGVDEAGRGPLAGPVVAAAVVLGEG-LPAGIGDSKKLSAKRRAALDEELRACCKWAVA 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVI----PRSALIDGRSIPE----DLPCQAFAV 136 ID+ NI +AT++A+ V +L P LIDG PE + A A+ Sbjct: 73 VVEADEIDRLNIFQATMEAMTRCVRDLAAQLPGSPDIVLIDGNQTPERRCAEWRWPARAI 132 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 + GD I SI AASIIAK RDR+M A + +P YG++ + GY T +H + ++ GP+ + Sbjct: 133 VGGDGIEPSIGAASIIAKEWRDRMMIAAARAHPAYGWERNKGYGTKEHMEALRLHGPTSL 192 Query: 197 HRLTFRPLRNLSV 209 HR +F P+ S+ Sbjct: 193 HRQSFAPVAQASL 205 >gi|218458163|ref|ZP_03498254.1| ribonuclease HII [Rhizobium etli Kim 5] Length = 161 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 85/161 (52%), Positives = 113/161 (70%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 ++ P P F LE R+ WPVAG DE GRG LAGPVV AA+ILDP IP G+NDSK++ Sbjct: 1 DTAPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDSKQL 60 Query: 64 SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 S ++REEL+ +I ++A +SI+S+S ID+ +I KA+LDA+ A+ +L V L DG Sbjct: 61 SAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAVPASYVLTDGL 120 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA 164 +P L C AV+KGD+ S+SIAAASI+AKVTRDR+M A Sbjct: 121 DVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMARA 161 >gi|310779317|ref|YP_003967650.1| Ribonuclease H [Ilyobacter polytropus DSM 2926] gi|309748640|gb|ADO83302.1| Ribonuclease H [Ilyobacter polytropus DSM 2926] Length = 203 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 80/194 (41%), Positives = 112/194 (57%), Gaps = 11/194 (5%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREE 70 F++E + GIDE GRG LAGPVV AA+ + F INDSKK+S KKRE Sbjct: 7 FDME-------YGDIIGIDEAGRGPLAGPVVAAAVKIKKYVKEFDMINDSKKLSEKKREL 59 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPE 127 L++ I + + + + + ID +NI AT + A+E++ + + L+DG Sbjct: 60 LFDVIIENCHVGVGVVNEKDIDNYNILNATFMGMIKAIEDISEEGISFENVLVDGNHKIR 119 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + + +IKGD SL+IAAASIIAKVTRDR+M +KYP+YGF H GY T +H++ Sbjct: 120 EYNNRQTPIIKGDGKSLAIAAASIIAKVTRDRIMVKYDEKYPEYGFAKHKGYGTKQHREA 179 Query: 188 IKEKGPSCIHRLTF 201 I + G HR TF Sbjct: 180 ILKNGACQCHRKTF 193 >gi|227504791|ref|ZP_03934840.1| ribonuclease HII [Corynebacterium striatum ATCC 6940] gi|227198641|gb|EEI78689.1| ribonuclease HII [Corynebacterium striatum ATCC 6940] Length = 213 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 74/196 (37%), Positives = 102/196 (52%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREEL 71 E + + + PVAG+DE GRGA GP+ +AA IL IP + DSKK+S RE L Sbjct: 10 YEVALSKAGLGPVAGVDEAGRGACCGPITIAACILPDKIIPELDKLTDSKKLSPATRERL 69 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ S+ + IDK I A + + AV L V P L D +P +P Sbjct: 70 FPIIKDKAVAWSVVHIDARDIDKRGIQHANVSGMRRAVARLDVRPHYVLSDALKVP-GMP 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD+ + IAAAS++AKV+RD +M YP YG H GY TA HQ I + Sbjct: 129 APQLPIIGGDAAARCIAAASVLAKVSRDHIMDELDVAYPGYGLAGHKGYGTAAHQAAIVK 188 Query: 191 KGPSCIHRLTFRPLRN 206 G + HR+ + + N Sbjct: 189 LGATPEHRMGYANVAN 204 >gi|328948714|ref|YP_004366051.1| ribonuclease H [Treponema succinifaciens DSM 2489] gi|328449038|gb|AEB14754.1| Ribonuclease H [Treponema succinifaciens DSM 2489] Length = 199 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 72/198 (36%), Positives = 103/198 (52%), Gaps = 18/198 (9%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M + GIDE GRG LAGPV ++L + +NDSKK+S KKRE + I + Sbjct: 1 MDFLVGIDEAGRGPLAGPVTAGCVLLPIDFPVEILNDSKKLSEKKREAASDVIREKSCWG 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIP-----------------RSALIDGRSI 125 I S + ID+ NI +A A+ A + +++ ++DG + Sbjct: 61 IGIVSEKIIDEINILQADFKAMKIAFDMMRMKLPAWCEKNKFNFEQCKNSMQIIVDGNML 120 Query: 126 P-EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 P D AVIK DS + AASI+AKV RD++M K YP+YG+ H GYPT H Sbjct: 121 PFTDKNLDIKAVIKADSKFPCVMAASILAKVQRDKIMIDYDKLYPEYGYAKHKGYPTLAH 180 Query: 185 QQVIKEKGPSCIHRLTFR 202 +++ + GPS I RL+F+ Sbjct: 181 KEICRRLGPSPIQRLSFK 198 >gi|68171965|ref|ZP_00545273.1| Ribonuclease H [Ehrlichia chaffeensis str. Sapulpa] gi|67998612|gb|EAM85357.1| Ribonuclease H [Ehrlichia chaffeensis str. Sapulpa] Length = 209 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 85/200 (42%), Positives = 116/200 (58%), Gaps = 6/200 (3%) Query: 9 RPHFELEAM---VREKNMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKI 63 P F +E + + G+DEVG G+LAGPVV AA+ N+I + I DSKK+ Sbjct: 1 MPDFSIENEISKLINNKHCTIVGVDEVGYGSLAGPVVSAAVFFPKHDNHITYNIQDSKKL 60 Query: 64 SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 + KKR E+Y IT SI A ID++NI AT A+ A+ L ++DG Sbjct: 61 TPKKRLEIYNIITPMVKWSIGLAEVHEIDQYNILNATHIAMQRALRGLNSNINYVIVDGN 120 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +PE LP A AV+ GD+IS+SIAAASIIAKVTRD+LM H ++P Y ++ + GY T Sbjct: 121 KVPE-LPWNAKAVVDGDNISISIAAASIIAKVTRDKLMETLHIQFPQYNWNKNKGYGTKH 179 Query: 184 HQQVIKEKGPSCIHRLTFRP 203 H + + + G + HR TF P Sbjct: 180 HLESLHKYGKTIHHRNTFAP 199 >gi|306836387|ref|ZP_07469365.1| ribonuclease HII [Corynebacterium accolens ATCC 49726] gi|304567747|gb|EFM43334.1| ribonuclease HII [Corynebacterium accolens ATCC 49726] Length = 213 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 68/196 (34%), Positives = 100/196 (51%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREEL 71 E + + PVAG+DE GRGA GP+ +AA IL + DSKK++ ++RE+L Sbjct: 10 FEVALARAGLGPVAGVDEAGRGACCGPITIAACILPERIVGELDTLTDSKKLTPRQREKL 69 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ S+ IDK I A + AV L+ P L D IP L Sbjct: 70 FPIIKDKAVDWSVVHIGAGDIDKRGIQHANTSGMRRAVARLEQRPGYVLSDALFIP-GLT 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++ GD+ + IAAAS++AKV+RD LM +++P YG H GY T H+ I Sbjct: 129 QPHLPIVGGDAAARCIAAASVLAKVSRDHLMLDLDERFPGYGLAGHKGYGTKAHEAAIAA 188 Query: 191 KGPSCIHRLTFRPLRN 206 G S HR+++ ++ Sbjct: 189 LGASPEHRMSYSNVQR 204 >gi|33866676|ref|NP_898235.1| ribonuclease HII [Synechococcus sp. WH 8102] gi|33633454|emb|CAE08659.1| ribonuclease HII [Synechococcus sp. WH 8102] Length = 239 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 69/181 (38%), Positives = 103/181 (56%), Gaps = 5/181 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-I 80 VAG+DEVGRG L GPV A++L+ N G+ DSK++S ++R +L I A Sbjct: 53 VAGVDEVGRGCLFGPVFAGAVVLEAANASRLQQEGLTDSKRLSARRRGDLVPLIEHEAEA 112 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 + +S + ID+ I AT A+ A++ L P L+DG + +++ GD Sbjct: 113 WGLGQSSTREIDRLGIRPATELAMLRALQRLPNRPELVLVDGNLPLRPWTGEQRSIVAGD 172 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 SL+IAAAS+IAK RD LM+ +++P YG + H GY TA H+ + + GPS +HR + Sbjct: 173 QHSLAIAAASVIAKQCRDALMQRLSQRFPGYGLERHAGYGTALHRAALLDLGPSALHRRS 232 Query: 201 F 201 F Sbjct: 233 F 233 >gi|148238709|ref|YP_001224096.1| ribonuclease HII [Synechococcus sp. WH 7803] gi|189043669|sp|A5GIN4|RNH2_SYNPW RecName: Full=Ribonuclease HII; Short=RNase HII gi|147847248|emb|CAK22799.1| Ribonuclease HII [Synechococcus sp. WH 7803] Length = 194 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 102/180 (56%), Gaps = 5/180 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSSA-II 81 G+DEVGRG L GPV AA+ L D G+ DSK +S K+R +L I + A Sbjct: 3 VGVDEVGRGCLFGPVFAAAVSLTGAADAELTALGLTDSKALSAKRRADLVPHIQAKASAW 62 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 ++ S + ID H I AT A+ A++ L + P L+DG P +++GDS Sbjct: 63 ALGQGSAREIDAHGIRVATELAMLRALQKLPIQPELVLVDGVLPLRLWPGAQRTIVRGDS 122 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAAS++AKV RD LM +++P+YGF+ H GY TA H+Q + GP+ +HR +F Sbjct: 123 QEASIAAASVLAKVARDGLMCRLAERFPEYGFERHAGYGTALHRQALITSGPTALHRKSF 182 >gi|227503370|ref|ZP_03933419.1| ribonuclease HII [Corynebacterium accolens ATCC 49725] gi|227075873|gb|EEI13836.1| ribonuclease HII [Corynebacterium accolens ATCC 49725] Length = 213 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 68/196 (34%), Positives = 101/196 (51%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREEL 71 E + + + PVAG+DE GRGA GP+ +AA IL + DSKK++ ++RE+L Sbjct: 10 FEVALAKAGLGPVAGVDEAGRGACCGPITIAACILPERIVGELDTLTDSKKLTPRQREKL 69 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ S+ IDK I A + AV L+ P L D IP L Sbjct: 70 FPIIKDKAVDWSVVHIGAGDIDKRGIQHANTSGMRRAVARLEQRPGYVLSDALFIP-GLT 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++ GD+ + IAAAS++AKV+RD LM +++P YG H GY T H+ I Sbjct: 129 QPHLPIVGGDAAARCIAAASVLAKVSRDHLMLDLDERFPGYGLAGHKGYGTKAHEAAIAA 188 Query: 191 KGPSCIHRLTFRPLRN 206 G S HR+++ ++ Sbjct: 189 LGASPEHRMSYSNVQR 204 >gi|71892067|ref|YP_277797.1| ribonuclease HII [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|97182291|sp|Q493B8|RNH2_BLOPB RecName: Full=Ribonuclease HII; Short=RNase HII gi|71796173|gb|AAZ40924.1| ribonuclease HII [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 217 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 82/204 (40%), Positives = 112/204 (54%), Gaps = 1/204 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 SI + + E+ + K +AG+DE G G+L G V+ AA+IL G+ DSK ++ Sbjct: 6 SIVQVKNNEIPKTLSIKKFKLIAGVDESGCGSLVGSVIAAAVILHSIQPISGLADSKTLN 65 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KR LY+ I +A+ SI A ID+ NI +A L A+ AV NL V P LIDG Sbjct: 66 KNKRLNLYKNIIKNALAWSIGYADVTEIDRSNILEARLLAMKRAVHNLSVKPDLILIDGN 125 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 P KGD+ I+AASIIAKVTRD+ M I K+YP YGF + GYPT Sbjct: 126 RSPGFTEIPYQCFNKGDARIAIISAASIIAKVTRDQDMIILDKQYPKYGFAQNKGYPTFF 185 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H + + GP HR +F P++++ Sbjct: 186 HLKQLALYGPISQHRKSFAPVKHV 209 >gi|194332870|ref|YP_002014730.1| ribonuclease HII [Prosthecochloris aestuarii DSM 271] gi|194310688|gb|ACF45083.1| Ribonuclease H [Prosthecochloris aestuarii DSM 271] Length = 206 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 86/202 (42%), Positives = 117/202 (57%), Gaps = 10/202 (4%) Query: 16 AMVREKNMWP----VAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKK 67 + E+ WP V GIDE GRG LAGPVV AA++ + P G +NDSK I ++ Sbjct: 4 TTLYEQQFWPDLQRVCGIDEAGRGPLAGPVVAAAVVFPRHFRPHGFISTLNDSKTIPPRR 63 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R+EL + I A +I+ H ID+ NI +AT+ A+ +A +L+ P LIDG Sbjct: 64 RKELAQAIIQEAEDYAIAEVDHIEIDRINILQATMLAMNNAAGSLEHSPSLLLIDGNRFH 123 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 P ++KGD+ SIAAASI+AK RD +M A YP+YGF+ H GYPT +H + Sbjct: 124 PARPVAFRTIVKGDASVFSIAAASILAKTHRDAIMTEAALLYPEYGFEKHFGYPTREHIE 183 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 I+ G S IHR++FR LR L Sbjct: 184 AIRNHGRSPIHRMSFR-LRQLG 204 >gi|256827134|ref|YP_003151093.1| ribonuclease HII [Cryptobacterium curtum DSM 15641] gi|256583277|gb|ACU94411.1| ribonuclease HII [Cryptobacterium curtum DSM 15641] Length = 262 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 96/179 (53%), Gaps = 6/179 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G+DEVGRG LAGP+ VAA++L +NDSK++S +REE+ + AI S+ Sbjct: 76 VGLDEVGRGPLAGPLTVAAVVLPEAPHIAHLNDSKQLSASRREEVAAAVKDVAIAWSVQH 135 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + + ID + A AV + V L+DG P + IKGD+ Sbjct: 136 IAPEDIDDAGMSACLRRAFGRAVAAVETAGVAIDVVLLDGN--PLHFDVRERTFIKGDAR 193 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAAS++AKV RD LM A + YP YGFD + GY +A+H IK+ G +HR +F Sbjct: 194 LACIAAASVVAKVERDELMTQAAQTYPVYGFDRNKGYGSAEHIAAIKKYGLCPLHRRSF 252 >gi|285018804|ref|YP_003376515.1| ribonuclease hII (rnase hII, degrades rna of DNA-rna hybrids) protein [Xanthomonas albilineans GPE PC73] gi|283474022|emb|CBA16523.1| probable ribonuclease hII (rnase hII, degrades rna of dna-rna hybrids) protein [Xanthomonas albilineans] Length = 219 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 86/208 (41%), Positives = 121/208 (58%), Gaps = 13/208 (6%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGIND 59 +F +P P L AG+DE GRG LAGPV VAA++ DPN G++D Sbjct: 10 LFPEPLPPDPDSRL-----------YAGVDEAGRGPLAGPVAVAAVVFDPNQPRINGLDD 58 Query: 60 SKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 SK+++ +RE LY +I A+ + + ID+ NI++AT+ + AVE + + A Sbjct: 59 SKQLTAARRETLYPRIIERALAWQVVLIEAEEIDRLNIYQATMLGMRRAVEGVAHVAGFA 118 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 IDG +P+ LPC A A+I GD++ +I AASIIAKVTRDR+M+ H ++P YGFD H G Sbjct: 119 RIDGNRVPKGLPCPAEALIGGDALDRAIMAASIIAKVTRDRIMQHLHAEHPHYGFDLHKG 178 Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 Y T H + GP HR +F P+R Sbjct: 179 YATPAHLAALAAHGPCPQHRRSFAPVRK 206 >gi|39932283|sp|Q7U4C6|RNH2_SYNPX RecName: Full=Ribonuclease HII; Short=RNase HII Length = 224 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 69/181 (38%), Positives = 103/181 (56%), Gaps = 5/181 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-I 80 VAG+DEVGRG L GPV A++L+ N G+ DSK++S ++R +L I A Sbjct: 38 VAGVDEVGRGCLFGPVFAGAVVLEAANASRLQQEGLTDSKRLSARRRGDLVPLIEHEAEA 97 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 + +S + ID+ I AT A+ A++ L P L+DG + +++ GD Sbjct: 98 WGLGQSSTREIDRLGIRPATELAMLRALQRLPNRPELVLVDGNLPLRPWTGEQRSIVAGD 157 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 SL+IAAAS+IAK RD LM+ +++P YG + H GY TA H+ + + GPS +HR + Sbjct: 158 QHSLAIAAASVIAKQCRDALMQRLSQRFPGYGLERHAGYGTALHRAALLDLGPSALHRRS 217 Query: 201 F 201 F Sbjct: 218 F 218 >gi|7240593|gb|AAB33869.2| RNase HII [Caulobacter vibrioides] Length = 192 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 84/174 (48%), Positives = 103/174 (59%), Gaps = 3/174 (1%) Query: 33 GRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYI 91 GR AGPV A+ILDP+ IP G+NDSKK+S K R L E+I AI + AS + I Sbjct: 7 GRAPWAGPVSAGAVILDPDRIPKGLNDSKKLSAKARAALEEEIKDVAISWCVGLASIEEI 66 Query: 92 DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASI 151 + NI A A+ AVE L V P AL+DG LPC VIKGDS+S SIAAASI Sbjct: 67 AQLNILHAAGLAMRRAVEGLAVTPAFALVDGN-YAFKLPCPVKTVIKGDSLSCSIAAASI 125 Query: 152 IAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 +AK RDR+M A YP Y F H GY H + ++ GPS IHRL + P++ Sbjct: 126 LAKEARDRIMIEADALYPGY-FAGHKGYHAKVHVEGLRRLGPSPIHRLGWAPVK 178 >gi|225552167|ref|ZP_03773107.1| ribonuclease HII [Borrelia sp. SV1] gi|225371165|gb|EEH00595.1| ribonuclease HII [Borrelia sp. SV1] Length = 181 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 106/180 (58%), Gaps = 1/180 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAIISIS 84 + GIDEVGRG + GP++ AA++ ++DSKK+ +KRE L I ++ + + Sbjct: 2 ICGIDEVGRGCIFGPILSAAVVFKKKTSFINELDDSKKLKKEKREYLSSLILENSYYAFA 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S+ I+K NIH A+L A+ A ENL++ L+DG+ +P+ A+IKGDSI Sbjct: 62 EISNITIEKINIHNASLLAMQTAYENLKLNCSLVLVDGKFVPKITAKNVKAIIKGDSIID 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR F+ + Sbjct: 122 EIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFKLI 181 >gi|260460365|ref|ZP_05808617.1| Ribonuclease H [Mesorhizobium opportunistum WSM2075] gi|259034010|gb|EEW35269.1| Ribonuclease H [Mesorhizobium opportunistum WSM2075] Length = 205 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 97/188 (51%), Positives = 131/188 (69%), Gaps = 2/188 (1%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 +WPVAG+DE GRG LAGPVV AA++LDP NIP G++DSK++SH +RE L+ +I SA Sbjct: 2 ADGLWPVAGMDEAGRGPLAGPVVAAAVVLDPANIPEGLDDSKRLSHLQREALFLRILGSA 61 Query: 80 -IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 +S++S S + ID NI KA+L+A+ A+ L V P+ AL DGR +P LPC+ A+IK Sbjct: 62 QAVSMASISAEGIDGSNILKASLEAMRRALVGLSVRPKLALADGRDVPPGLPCEGRALIK 121 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIH 197 GD S SIAAASI+AKV RDR+M YGF+ H+GY TA+H+ I+ GP + +H Sbjct: 122 GDQRSQSIAAASIVAKVMRDRMMCGCGSHNGRYGFEVHMGYATARHRTAIEAHGPVARLH 181 Query: 198 RLTFRPLR 205 R++F P R Sbjct: 182 RVSFSPFR 189 >gi|85714250|ref|ZP_01045238.1| ribonuclease HII/HIII [Nitrobacter sp. Nb-311A] gi|85698697|gb|EAQ36566.1| ribonuclease HII/HIII [Nitrobacter sp. Nb-311A] Length = 215 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 90/185 (48%), Positives = 120/185 (64%), Gaps = 1/185 (0%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 + +WPVAG DE GRG LAGPVV AA++LDPN IP GI+DSK+++ +REEL+E+IT++A Sbjct: 2 RRGVWPVAGCDEAGRGPLAGPVVAAAVVLDPNRIPEGIDDSKRLTAARREELFEEITATA 61 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 +I+ A ID+ NI +A+L A+ AV L +DGR E + C+ VI G Sbjct: 62 SFAIAVAPIARIDRDNILRASLWALARAVHALPDAAEHVFVDGRDRIE-VACECEPVIGG 120 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D + LSIAAASI+AKVTRDRLM P YGF++H GY +H + + GPS HR Sbjct: 121 DGLVLSIAAASIVAKVTRDRLMCRLALDCPGYGFETHKGYAVPEHLEALGRLGPSPHHRS 180 Query: 200 TFRPL 204 F P+ Sbjct: 181 FFAPV 185 >gi|304319995|ref|YP_003853638.1| ribonuclease HII [Parvularcula bermudensis HTCC2503] gi|303298898|gb|ADM08497.1| ribonuclease HII [Parvularcula bermudensis HTCC2503] Length = 209 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 79/199 (39%), Positives = 111/199 (55%), Gaps = 5/199 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREEL 71 + E ++ P+ GIDE GRGA AGPVV AA+I D P + DSK + +RE L Sbjct: 6 DTELAFADEIGGPICGIDEAGRGAWAGPVVAAAVICGDVKAYPEDLADSKTLREARREHL 65 Query: 72 YEKI--TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 ++ + + + AS ID+ + KA A+ AV+ L P AL+DG P L Sbjct: 66 FDLLSARQDLRVGVGVASVAEIDRMGVGKANWLAMARAVKALPSPPLGALVDGNYAPA-L 124 Query: 130 PCQ-AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 PC ++KGD L IAAASI+AKVTRDR+MR ++P Y + ++ GYP H+ + Sbjct: 125 PCPDIRPIVKGDGSCLVIAAASIVAKVTRDRIMRSLCPEHPAYRWSANKGYPAPVHRAAL 184 Query: 189 KEKGPSCIHRLTFRPLRNL 207 +E GPS HR +F P+ L Sbjct: 185 EEIGPSAHHRHSFAPIAAL 203 >gi|229496858|ref|ZP_04390566.1| ribonuclease HII [Porphyromonas endodontalis ATCC 35406] gi|229316176|gb|EEN82101.1| ribonuclease HII [Porphyromonas endodontalis ATCC 35406] Length = 198 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 73/176 (41%), Positives = 103/176 (58%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRG+L G V AA+IL + +NDSKK++ + R L +I A+ ++ Sbjct: 14 CGCDEAGRGSLVGDVFAAAVILPEDFCLPELNDSKKLTERTRYRLRPQIEEQAVAWAVGR 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS + ID +NI A+ A++ A+ L + P+ LIDG L ++KGDS S Sbjct: 74 ASAEEIDTYNILHASFLAMHRAIAALGITPQRLLIDGNHFDPYLDIPHECIVKGDSRLAS 133 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M AHK++P YG+D + GYPT H+Q I++ G S + R TF Sbjct: 134 IAAASILAKTYRDDYMLAAHKRFPVYGWDRNKGYPTPAHRQAIEKMGHSPLQRFTF 189 >gi|212695498|ref|ZP_03303626.1| hypothetical protein ANHYDRO_00014 [Anaerococcus hydrogenalis DSM 7454] gi|212677498|gb|EEB37105.1| hypothetical protein ANHYDRO_00014 [Anaerococcus hydrogenalis DSM 7454] Length = 210 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 83/200 (41%), Positives = 121/200 (60%), Gaps = 9/200 (4%) Query: 8 ERPHF-----ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62 ++P + E++ + E+ +AGIDEVGRG LAGPVV A+++ ++ G+ DSKK Sbjct: 2 KKPRYSEFNDEIKNEIHER-YDLIAGIDEVGRGPLAGPVVACAVVMKKDSHIEGVTDSKK 60 Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 +S KK +ELY KI +I S A++ IDK NI +AT A+ A+E L+ P+ LID Sbjct: 61 LSKKKMKELYGKIIDDSISYSFGYANNVLIDKINIKEATKLAMKDALERLEKTPQIVLID 120 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 I D+ + ++KGD +I+ ASI+AKV RD++M K YP Y F+++ GY T Sbjct: 121 AERIDTDI--KQLNIVKGDLYEYAISCASILAKVRRDKIMENFSKIYPYYSFETNAGYGT 178 Query: 182 AKHQQVIKEKGPSCIHRLTF 201 KH Q I++ G IHR TF Sbjct: 179 KKHYQGIEKYGECPIHRKTF 198 >gi|162149133|ref|YP_001603594.1| ribonuclease HII [Gluconacetobacter diazotrophicus PAl 5] gi|189043600|sp|A9H3E2|RNH2_GLUDA RecName: Full=Ribonuclease HII; Short=RNase HII gi|161787710|emb|CAP57306.1| Ribonuclease HII [Gluconacetobacter diazotrophicus PAl 5] Length = 224 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 80/206 (38%), Positives = 117/206 (56%), Gaps = 10/206 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISH 65 P + E ++ VAG+DEVGRG LAGPVV AA++ D P + ++DSKK++ Sbjct: 1 MPDYTREM----QHGGRVAGVDEVGRGPLAGPVVAAAVMFDSGVPRRLVTQLDDSKKLTE 56 Query: 66 KKREELYEKITSS--AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 R Y + ++ I++++AS I + NI +A A+ AV L P L+DG Sbjct: 57 AARLRAYAALHAARGVHIAVAAASVSEIARLNILRAAFLAMRRAVARLPHQPDMVLVDGN 116 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + P D C A V+ GD SLSIAAASI+AKV RDRLM ++P YG++ + GY TA+ Sbjct: 117 AAP-DFGCPAQCVVGGDGESLSIAAASIVAKVVRDRLMARLSCRWPGYGWERNAGYGTAE 175 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLSV 209 H+ + G + HR F +R L++ Sbjct: 176 HRAALCRAGTTPHHREAFGLVRQLTL 201 >gi|84498367|ref|ZP_00997164.1| ribonuclease HII [Janibacter sp. HTCC2649] gi|84381867|gb|EAP97750.1| ribonuclease HII [Janibacter sp. HTCC2649] Length = 261 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 67/220 (30%), Positives = 105/220 (47%), Gaps = 18/220 (8%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGIN 58 M S +P +E ++ +AG+DEVGRGALAGPV V +++D P G+ Sbjct: 1 MPPASRSRKPSLRVERALQRDGYRLLAGMDEVGRGALAGPVSVGVVVIDETCRSAPQGVR 60 Query: 59 DSKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117 DSK + RE + +I A ++ AS ID+ I A A A+ +L V+P Sbjct: 61 DSKLLQPSARELMVPRIRRWAFAHAVGHASPAEIDEVGIIAALRLAGRRALASLDVVPDL 120 Query: 118 ALIDGRSIPEDLP---------------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162 ++DG P +IK D S+A+AS++AKV RDR+M Sbjct: 121 VILDGNHDWLTAPDEVGLLAFTSDDVHTPPVTTMIKADMKCSSVASASVLAKVERDRMMV 180 Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 + Y ++ + GY +H ++E GP+ +HR ++R Sbjct: 181 DLAPDHAAYRWELNKGYAAPEHMDALREHGPTELHRRSWR 220 >gi|288573052|ref|ZP_06391409.1| Ribonuclease H [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568793|gb|EFC90350.1| Ribonuclease H [Dethiosulfovibrio peptidovorans DSM 11002] Length = 194 Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 74/181 (40%), Positives = 101/181 (55%), Gaps = 6/181 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS-SAII 81 AG+DE GRG +AGPVV AA IL G+ DSKK++ +RE+++ + I Sbjct: 8 AGVDEAGRGPMAGPVVAAAAILTEEQSERLVSAGLRDSKKMTPLRREKVFSLMGELGVIW 67 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENL-QVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 + +AS + IDK NI +ATL A+ +VE L + L+DG DL GD Sbjct: 68 AAQAASVERIDKINILRATLWAMRRSVERLPSRLFDGVLVDGDKEIPDLIWPQRVCPHGD 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + I+AAS++AKV RDR M + YP YGF SH GY T H+ ++ GPS IHR + Sbjct: 128 DVYPQISAASVVAKVLRDRAMVALDRLYPAYGFASHKGYGTKAHRNALEAMGPSPIHRKS 187 Query: 201 F 201 F Sbjct: 188 F 188 >gi|295836133|ref|ZP_06823066.1| ribonuclease HII [Streptomyces sp. SPB74] gi|197695228|gb|EDY42161.1| ribonuclease HII [Streptomyces sp. SPB74] Length = 233 Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 74/202 (36%), Positives = 107/202 (52%), Gaps = 2/202 (0%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R VAGIDEVGRGA AGPV V A + P G+ DSK ++ K Sbjct: 4 EAPTHSVERSLRATTGAKVVAGIDEVGRGAWAGPVSVCAAVTGLRRAPEGLTDSKLLTPK 63 Query: 67 KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R L ++ S+ AS + ID + A A A++ L V P ++DG Sbjct: 64 RRAALVVELEKWVTAHSLGHASPEEIDALGMTAALRLAAVRALDGLPVRPDWVILDGNHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P VIKGD +S+AAAS++AKV RDRLM ++ D+ F ++ GYP+ H+ Sbjct: 124 YLGAPWNVRTVIKGDQSCVSVAAASVLAKVARDRLMAELGAQHEDFAFAANAGYPSPAHK 183 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 + E+GP+ HRL++ L + Sbjct: 184 TALAERGPTPYHRLSWSYLDAM 205 >gi|209545123|ref|YP_002277352.1| ribonuclease HII [Gluconacetobacter diazotrophicus PAl 5] gi|209532800|gb|ACI52737.1| Ribonuclease H [Gluconacetobacter diazotrophicus PAl 5] Length = 224 Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 80/206 (38%), Positives = 117/206 (56%), Gaps = 10/206 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISH 65 P + E ++ VAG+DEVGRG LAGPVV AA++ D P + ++DSKK++ Sbjct: 1 MPDYTREM----QHGGRVAGVDEVGRGPLAGPVVAAAVMFDSGVPRRLATQLDDSKKLTE 56 Query: 66 KKREELYEKITSS--AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 R Y + ++ I++++AS I + NI +A A+ AV L P L+DG Sbjct: 57 AARLRAYAALHAARGVHIAVAAASVSEIARLNILRAAFLAMRRAVARLPHQPDMVLVDGN 116 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + P D C A V+ GD SLSIAAASI+AKV RDRLM ++P YG++ + GY TA+ Sbjct: 117 AAP-DFGCPAQCVVGGDGESLSIAAASIVAKVVRDRLMARLSCRWPGYGWERNAGYGTAE 175 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLSV 209 H+ + G + HR F +R L++ Sbjct: 176 HRAALCRAGTTPHHREAFGLVRQLTL 201 >gi|257455290|ref|ZP_05620525.1| ribonuclease HII [Enhydrobacter aerosaccus SK60] gi|257447252|gb|EEV22260.1| ribonuclease HII [Enhydrobacter aerosaccus SK60] Length = 240 Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 105/222 (47%), Gaps = 40/222 (18%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDP------------------------NNIPFGINDS 60 + G+DEVGRG L G VVV A+I D N+ + DS Sbjct: 5 FIIGVDEVGRGPLLGDVVVCALIFDKAILSIKEDSLSTDLPTADSVSISHNHPLSALTDS 64 Query: 61 KKISHKKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVEN-----LQVI 114 KK+S KKRE L+ I +A + S ID+ NI +ATL + AV L Sbjct: 65 KKLSEKKREALFSLIEQTASAHQVVKISASLIDQLNILQATLLGMKQAVAGVMAQMLAQY 124 Query: 115 PRS---ALIDGRSIPEDLPCQA-------FAVIKGDSISLSIAAASIIAKVTRDRLMRIA 164 P + ++DG +P A++KGD I+ AS+IAKVTRDR M Sbjct: 125 PTATFSVMVDGNKLPVLFDLPNYQQITHEQAIVKGDGKHACISGASVIAKVTRDRDMVAL 184 Query: 165 HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 K YPDYG + H GYPTA H Q I+ G +HR +F P++ Sbjct: 185 SKLYPDYGIEQHKGYPTAAHIQAIEHYGILPMHRKSFAPIKQ 226 >gi|307297954|ref|ZP_07577758.1| Ribonuclease H [Thermotogales bacterium mesG1.Ag.4.2] gi|306916040|gb|EFN46423.1| Ribonuclease H [Thermotogales bacterium mesG1.Ag.4.2] Length = 241 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 76/191 (39%), Positives = 114/191 (59%), Gaps = 4/191 (2%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 + +AG+DE GRG LAGPVV AA+I+ N G+ DSK + K RE L+ +I Sbjct: 23 AAYRADHRVIAGVDEAGRGPLAGPVVAAAVIV--LNPVDGVYDSKALCRKTRELLFGQIL 80 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 ++I+ I S + +D N+ AT A+ A+ L P ++DG+S+ D+ + + Sbjct: 81 ENSIVGIGLCSPEEVDILNVFAATRLAMNRALRILSRKPDYVIVDGKSLRLDISGE--CI 138 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 + GD S +IA+ASI+AKV RDR+M YP+YG+ +H GY T H + +++ GP+ Sbjct: 139 VGGDRRSAAIASASIVAKVFRDRIMDSLDILYPEYGYRNHKGYCTDMHLRALRKYGPTTW 198 Query: 197 HRLTFRPLRNL 207 HRLTFRP+R L Sbjct: 199 HRLTFRPVREL 209 >gi|288922428|ref|ZP_06416616.1| Ribonuclease H [Frankia sp. EUN1f] gi|288346231|gb|EFC80572.1| Ribonuclease H [Frankia sp. EUN1f] Length = 240 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 80/196 (40%), Positives = 111/196 (56%), Gaps = 4/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKRE 69 F E + + PVAG+DE GRGA AGP+VVAA+IL P +NDSK ++ + RE Sbjct: 15 FGYERALTRCGLGPVAGVDEAGRGACAGPLVVAAVILRPGRTRRLARLNDSKLLTERVRE 74 Query: 70 ELYEKITSSAIISISSASHQY-IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E+Y + +SA + ID+ +H A + + AV L V P L DG ++ E Sbjct: 75 EVYADVQASAAAVATVVVPAADIDRIGVHVANIMGMRRAVARLGVSPGYVLTDGFAV-EG 133 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 ++ AVIKGD IAAAS++AKVTRDR+MR H++Y +Y F H GY TA H + Sbjct: 134 FGVESLAVIKGDRAVGCIAAASVVAKVTRDRIMRCLHEQYAEYDFAQHKGYVTAAHTAAL 193 Query: 189 KEKGPSCIHRLTFRPL 204 GP HRL++ + Sbjct: 194 ARYGPCAEHRLSYVNV 209 >gi|302522312|ref|ZP_07274654.1| ribonuclease HII [Streptomyces sp. SPB78] gi|302431207|gb|EFL03023.1| ribonuclease HII [Streptomyces sp. SPB78] Length = 233 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 73/202 (36%), Positives = 107/202 (52%), Gaps = 2/202 (0%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R VAGIDEVGRGA AGPV V A + P G+ DSK ++ K Sbjct: 4 EAPTHSVERSLRATTGAKVVAGIDEVGRGAWAGPVSVCAAVTGLRRPPEGLTDSKLLTPK 63 Query: 67 KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R L ++ S+ AS + ID+ + A A A++ L V P ++DG Sbjct: 64 RRAALVVELEQWVTAHSLGHASPEEIDELGMTAALRLAAGRALDGLPVRPDWVILDGNHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P VIKGD +S+AAAS++AKV RDRLM ++ D+ F ++ GY + H+ Sbjct: 124 YLGAPWNVRTVIKGDQSCVSVAAASVLAKVARDRLMAELGAQHEDFAFAANAGYHSPAHK 183 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 + E+GP+ HRL++ L + Sbjct: 184 TALAERGPTPYHRLSWSYLDAM 205 >gi|209966435|ref|YP_002299350.1| ribonucleasehII [Rhodospirillum centenum SW] gi|209959901|gb|ACJ00538.1| ribonucleasehII [Rhodospirillum centenum SW] Length = 218 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 76/209 (36%), Positives = 107/209 (51%), Gaps = 22/209 (10%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALA------------GPVVVAAIILDPNNIPFG 56 P LE V G+DE GRG LA GP L G Sbjct: 5 MPDLTLEHRHGHAAGRIVCGVDEAGRGPLAGPVVAAAVVLPGGP-------LPDWC--AG 55 Query: 57 INDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ-VIP 115 I+DSK++S +RE L I + A + + A ID NI +AT A+ AVE L +P Sbjct: 56 IDDSKRLSAARREALCGLIRAQARVGVGIADVAEIDTLNILRATFLAMRRAVEGLGAPLP 115 Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 AL+DG P A++ GD++ LSIAAASI+AKVTRDR+M +++P YG++ Sbjct: 116 AVALVDGNQRPPLPCAIVEAIVDGDALCLSIAAASIVAKVTRDRIMAELAERHPGYGWER 175 Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 + GY TA H++ ++ G + HR +F P+ Sbjct: 176 NAGYGTAAHREALRRLGATPEHRRSFAPV 204 >gi|223889172|ref|ZP_03623761.1| ribonuclease HII [Borrelia burgdorferi 64b] gi|223885421|gb|EEF56522.1| ribonuclease HII [Borrelia burgdorferi 64b] Length = 181 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 107/180 (59%), Gaps = 1/180 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + GIDEVGRG + GP++ AA++ + ++DSKK+ +KRE L I ++ + + Sbjct: 2 ICGIDEVGRGCIFGPILSAAVVFKKKPSFIKELDDSKKLKKEKREYLSSLILENSYYAFA 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S+ I+K NIH A+L A+ A ENL++ L+DG+ +P+ A+IKGDSI Sbjct: 62 EISNITIEKINIHNASLLAMQTAYENLKLNCSLVLVDGKFVPKITAKNVKAIIKGDSIID 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR F+ + Sbjct: 122 EIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFKLI 181 >gi|323702665|ref|ZP_08114326.1| Ribonuclease H [Desulfotomaculum nigrificans DSM 574] gi|323532328|gb|EGB22206.1| Ribonuclease H [Desulfotomaculum nigrificans DSM 574] Length = 214 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 78/207 (37%), Positives = 107/207 (51%), Gaps = 27/207 (13%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAG---------PVVVAAIILDPNNIPFGINDSK 61 ELE + ++ + VA DEVGRG L G PV + G++DSK Sbjct: 3 SLELEQKLWQQGIKLVAFCDEVGRGPLLGSVVAAAVVLPV---------GLLIEGVDDSK 53 Query: 62 KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL------QVI 114 K++ KKRE L I A+ + I + ID+ NI +A+ A+ AV NL +V Sbjct: 54 KLTPKKRETLCRYIYDQALAVGIGEVDNNLIDQINIRQASRLAMKQAVMNLRSKEGHKVT 113 Query: 115 PRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174 P LID SI DL ++I GD++S IAAASI+AKV RD + + YPDYG Sbjct: 114 PDYLLIDAESI--DLDIPQQSIIHGDAVSHGIAAASIVAKVFRDSMCMEWDQMYPDYGIA 171 Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SH GY T H + + + G + +HR TF Sbjct: 172 SHKGYATKAHIEALLKLGATPLHRRTF 198 >gi|255325247|ref|ZP_05366353.1| ribonuclease HII [Corynebacterium tuberculostearicum SK141] gi|255297812|gb|EET77123.1| ribonuclease HII [Corynebacterium tuberculostearicum SK141] Length = 213 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 71/201 (35%), Positives = 102/201 (50%), Gaps = 4/201 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHK 66 + E + + + PVAG DE GRGA GP+ +AA ++ I + DSKK++ K Sbjct: 5 KQRRTYEVALSKAGLGPVAGADEAGRGACCGPITIAACVMPDRPIKELAALTDSKKLTPK 64 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +RE+L+ I A+ S+ IDK I A + + AV L+ P L D I Sbjct: 65 QREKLFPLIKDKAVDWSVVHIGAGDIDKRGIQHANISGMRRAVARLETRPGYVLTDALFI 124 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P L +I GD+ + IAAAS++AKV+RD LM +YP YG SH GY T H+ Sbjct: 125 P-GLTQPHLPIIGGDAAARCIAAASVLAKVSRDHLMHELDARYPGYGLASHKGYGTKAHE 183 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 I G HR+++ +R Sbjct: 184 AAIAALGACPEHRMSYENVRR 204 >gi|294085233|ref|YP_003551993.1| Ribonuclease H [Candidatus Puniceispirillum marinum IMCC1322] gi|292664808|gb|ADE39909.1| Ribonuclease H [Candidatus Puniceispirillum marinum IMCC1322] Length = 230 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 82/217 (37%), Positives = 115/217 (52%), Gaps = 25/217 (11%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHK 66 P E GIDE GRG AGPV VAA+ LDP +++P G++DSKK+ Sbjct: 12 PDLSREQAFE----GLTIGIDEAGRGPWAGPVTVAAVWLDPKCYDDLPAGLDDSKKLKAD 67 Query: 67 KREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA------- 118 KR LY+ +T++ I S+ S ID NI + TL A++ E+L A Sbjct: 68 KRAALYDALTTNTHIYSVISVPPAIIDAGNILQVTLQAMHDCAEDLAGQLAQAGYKSALH 127 Query: 119 -LIDGRSIPEDLPCQ--------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 L+DG +P +P AVI GD +SLSIAAASIIAK TRD +M YP Sbjct: 128 MLVDGSIMPP-IPAPPVDGGLFTGEAVIGGDGLSLSIAAASIIAKHTRDGIMTELDAAYP 186 Query: 170 DYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 YG+ +++GY T HQ+ + G + HR +++P++ Sbjct: 187 GYGWATNMGYGTKAHQEGLATLGVTPHHRKSYKPVKR 223 >gi|313901979|ref|ZP_07835395.1| Ribonuclease H [Thermaerobacter subterraneus DSM 13965] gi|313467768|gb|EFR63266.1| Ribonuclease H [Thermaerobacter subterraneus DSM 13965] Length = 271 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 76/181 (41%), Positives = 106/181 (58%), Gaps = 2/181 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 VAG+DEVGRG LAGPVV A+IL G++DSK++ RE+L +I A+ Sbjct: 86 GDLQVAGVDEVGRGCLAGPVVAGAVILPAGAHLLGLDDSKRLPPAAREQLAARIRQQAVA 145 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 ++ A+ Q ID NI AT A+ A++ L V+P+ L+DG P DL A++ GD Sbjct: 146 WAVGLATPQEIDALNIWHATRLAMRRALDALAVMPQRVLVDG-RPPGDLGYPLDALVDGD 204 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + +IAAAS++AKV RD M ++YP YGF H GY TA H++ + GP HR + Sbjct: 205 ARYAAIAAASVVAKVYRDAWMSRLDREYPAYGFAQHKGYATAAHRRALARYGPCPEHRRS 264 Query: 201 F 201 F Sbjct: 265 F 265 >gi|254523247|ref|ZP_05135302.1| ribonuclease HII [Stenotrophomonas sp. SKA14] gi|219720838|gb|EED39363.1| ribonuclease HII [Stenotrophomonas sp. SKA14] Length = 221 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 76/185 (41%), Positives = 113/185 (61%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-I 81 +AG+DE GRG LAGPV VAA++ DP+ G++DSK+++ +RE+L+++I A+ Sbjct: 24 RLIAGVDEAGRGPLAGPVAVAAVVFDPSRPRINGLDDSKQLTAARREQLHDRIIERALAW 83 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 + ID+ NI++ATL + V + + A IDG +P+ L A A+I GD Sbjct: 84 HVVLVDVDTIDRLNIYQATLQGMREVVAAVAHVAGFARIDGNVVPKGLVLPAQALIGGDG 143 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I +I AASI+AKV+RDR M+ H ++P YGF+ H GY T H ++E GP HR +F Sbjct: 144 IDRAIMAASILAKVSRDRYMQDVHARHPQYGFEQHKGYGTPAHLAALREHGPCLEHRRSF 203 Query: 202 RPLRN 206 P+R Sbjct: 204 APVRE 208 >gi|159028469|emb|CAO87276.1| rnhB [Microcystis aeruginosa PCC 7806] Length = 207 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 79/197 (40%), Positives = 109/197 (55%), Gaps = 20/197 (10%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD------------PNNIPFGINDSKKISHKKREELY 72 +AG+DEVGRGAL GP P G+ DSK++S +KR++L Sbjct: 6 LIAGVDEVGRGALFGP--------VVAAVVVTVPSGFPQLWELGVKDSKQLSPQKRQKLS 57 Query: 73 EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 ++I + I A+ + ID+ NI A+L A+ A+ L + P LIDG+ I +DL Sbjct: 58 QQIQRDFVCRIGYATVKEIDRLNILHASLLAMSRAIGKLPLSPSLCLIDGKHIIKDLSIP 117 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 AVI+GD S IAAASI+AKV RD L+ H +YPDYG H GY TA+H + I G Sbjct: 118 QKAVIQGDQQSPVIAAASIVAKVWRDDLIARWHGRYPDYGLPRHKGYGTAQHLEAIGNHG 177 Query: 193 PSCIHRLTFRPLRNLSV 209 + HRL+F P + + V Sbjct: 178 LTSQHRLSFSPCQQIRV 194 >gi|39932425|sp|Q8NNZ4|RNH2_CORGL RecName: Full=Ribonuclease HII; Short=RNase HII gi|21324803|dbj|BAB99426.1| Ribonuclease HII [Corynebacterium glutamicum ATCC 13032] Length = 209 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 68/188 (36%), Positives = 93/188 (49%), Gaps = 4/188 (2%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITS 77 + PVAG+DE GRGA GP+ +AA IL I + DSKK+S RE+L I Sbjct: 3 RNGLGPVAGVDEAGRGACCGPISIAACILPDKPIQELAALTDSKKLSASTREKLMPLIKK 62 Query: 78 SAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 A+ S+ S Q ID+ I A + + AV L P L D +P + Sbjct: 63 HALAWSVIVISAQDIDRFGIQHANISGMRRAVAALGTQPGYVLTDAMKVP-GFTVPYLPI 121 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 I GD+ + IAAAS++AK TRD +M YP YG + H GY T H ++ G S Sbjct: 122 IGGDASARCIAAASVLAKQTRDDIMTDMANDYPHYGLEIHKGYSTKIHMDAVRHHGASPE 181 Query: 197 HRLTFRPL 204 HR ++ + Sbjct: 182 HRYSYANV 189 >gi|91975688|ref|YP_568347.1| ribonuclease HII [Rhodopseudomonas palustris BisB5] gi|122969169|sp|Q13BU3|RNH2_RHOPS RecName: Full=Ribonuclease HII; Short=RNase HII gi|91682144|gb|ABE38446.1| RNase HII [Rhodopseudomonas palustris BisB5] Length = 298 Score = 207 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 87/196 (44%), Positives = 130/196 (66%), Gaps = 1/196 (0%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P F E + ++ +WPVAG DE GRG LAGPVV AA++LDP +P G++DSK+++ +R Sbjct: 70 QPSFRRERALIKRGVWPVAGCDEAGRGPLAGPVVAAAVVLDPKRVPKGLDDSKRLTADRR 129 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 EEL+E+I ++A ++++ AS + I++ NI +A+L A+ AV L +P+ +DGR Sbjct: 130 EELFEEICATAQVAVAYASPERINRDNILRASLWALTRAVHALPDLPQHVFVDGRD-RLA 188 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 C++ AV+ GD + SIAAASIIAKV+RDRLM ++ P YGF+SH GY +H + Sbjct: 189 TRCESEAVVGGDGLIASIAAASIIAKVSRDRLMCRLAQECPGYGFESHKGYGVPEHLAAL 248 Query: 189 KEKGPSCIHRLTFRPL 204 GP+ HR F P+ Sbjct: 249 ARLGPTVHHRRFFAPV 264 >gi|224533903|ref|ZP_03674488.1| ribonuclease HII [Borrelia burgdorferi CA-11.2a] gi|225549198|ref|ZP_03770171.1| ribonuclease HII [Borrelia burgdorferi 94a] gi|224512906|gb|EEF83272.1| ribonuclease HII [Borrelia burgdorferi CA-11.2a] gi|225370056|gb|EEG99496.1| ribonuclease HII [Borrelia burgdorferi 94a] Length = 181 Score = 207 bits (528), Expect = 6e-52, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 106/180 (58%), Gaps = 1/180 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAIISIS 84 + GIDEVGRG + GP++ AA++ ++DSKK+ +KRE L I ++ + + Sbjct: 2 ICGIDEVGRGCIFGPILSAAVVFKKKLGFIKELDDSKKLKKEKREYLSSLILENSYYAFA 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S+ I+K NIH A+L A+ A ENL++ L+DG+ +P+ A+IKGDSI Sbjct: 62 EISNITIEKINIHNASLLAMQTAYENLKLNCSLVLVDGKFVPKITAKNVKAIIKGDSIID 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR F+ + Sbjct: 122 EIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFKLI 181 >gi|218249357|ref|YP_002374579.1| ribonuclease HII [Borrelia burgdorferi ZS7] gi|221217459|ref|ZP_03588930.1| ribonuclease HII [Borrelia burgdorferi 72a] gi|224533017|ref|ZP_03673623.1| ribonuclease HII [Borrelia burgdorferi WI91-23] gi|225549702|ref|ZP_03770667.1| ribonuclease HII [Borrelia burgdorferi 118a] gi|226320780|ref|ZP_03796336.1| ribonuclease HII [Borrelia burgdorferi 29805] gi|226322040|ref|ZP_03797565.1| ribonuclease HII [Borrelia burgdorferi Bol26] gi|226736816|sp|B7J0Y4|RNH2_BORBZ RecName: Full=Ribonuclease HII; Short=RNase HII gi|218164545|gb|ACK74606.1| ribonuclease HII [Borrelia burgdorferi ZS7] gi|221192737|gb|EEE18953.1| ribonuclease HII [Borrelia burgdorferi 72a] gi|224512011|gb|EEF82406.1| ribonuclease HII [Borrelia burgdorferi WI91-23] gi|225369662|gb|EEG99110.1| ribonuclease HII [Borrelia burgdorferi 118a] gi|226232630|gb|EEH31384.1| ribonuclease HII [Borrelia burgdorferi Bol26] gi|226233835|gb|EEH32560.1| ribonuclease HII [Borrelia burgdorferi 29805] gi|312149652|gb|ADQ29723.1| ribonuclease HII [Borrelia burgdorferi N40] Length = 181 Score = 207 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 107/180 (59%), Gaps = 1/180 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + GIDEVGRG + GP++ AA++ + ++DSKK+ +KRE L I ++ + + Sbjct: 2 ICGIDEVGRGCIFGPILSAAVVFKKKPSFIKELDDSKKLKKEKREYLSSLILKNSYYAFA 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S+ I+K NIH A+L A+ A ENL++ L+DG+ +P+ A+IKGDSI Sbjct: 62 EISNITIEKINIHNASLLAMQTAYENLKLNCSLVLVDGKFVPKITAKNVKAIIKGDSIID 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR F+ + Sbjct: 122 EIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFKLI 181 >gi|320536890|ref|ZP_08036883.1| ribonuclease HII [Treponema phagedenis F0421] gi|320146273|gb|EFW37896.1| ribonuclease HII [Treponema phagedenis F0421] Length = 199 Score = 207 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 82/193 (42%), Positives = 104/193 (53%), Gaps = 13/193 (6%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81 M + GIDE GRG LAGPV AA+IL P+ +NDSKK+S +KRE I + A+ I Sbjct: 1 MTLICGIDEAGRGPLAGPVTAAAVILPPDFASTLLNDSKKLSPQKREACRALIQAQALFI 60 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENL---------QVIPRSALIDGRSIPEDLP-- 130 A H ID NI +ATL A+ A ++L + ++DG +P+ L Sbjct: 61 GEGRADHIEIDAINILQATLLAMKRAFDDLYQKVLTSECRAASIRIIVDGNKLPDFLNPS 120 Query: 131 -CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A A K D+ + AASIIAK TRD M KKYP YG++ H GY TA H Q IK Sbjct: 121 IIAAAAEPKADAKYPEVMAASIIAKTTRDMEMLEWAKKYPQYGYEKHKGYCTAAHVQAIK 180 Query: 190 EKGPSCIHRLTFR 202 G S I R TF+ Sbjct: 181 NFGFSPIQRKTFK 193 >gi|326382879|ref|ZP_08204569.1| ribonuclease HII [Gordonia neofelifaecis NRRL B-59395] gi|326198469|gb|EGD55653.1| ribonuclease HII [Gordonia neofelifaecis NRRL B-59395] Length = 219 Score = 207 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 77/196 (39%), Positives = 113/196 (57%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREEL 71 LE + + + PVAG+DE GRGA AGP+VVAA +L + ++DSKK+S RE L Sbjct: 22 LEFTLARQGLGPVAGVDEAGRGACAGPLVVAACVLGAAQLKSLASLDDSKKLSEATRERL 81 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y + A+ ++ + +D+ +H A ++ + AV L V P L DG +P LP Sbjct: 82 YTAVVRHAVSWNVVAIPAAEVDRLGVHVANIEGMRRAVAGLSVRPGYVLSDGFQVP-GLP 140 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+ + IAAAS++AKVTRDR+M + P Y F H GY TA H + Sbjct: 141 APSLPVIGGDANAACIAAASVLAKVTRDRMMVALDAELPGYEFAVHKGYSTALHMACLDA 200 Query: 191 KGPSCIHRLTFRPLRN 206 +GPS HR+++R +R+ Sbjct: 201 RGPSVEHRMSYRNVRD 216 >gi|224532055|ref|ZP_03672687.1| ribonuclease HII [Borrelia valaisiana VS116] gi|224511520|gb|EEF81926.1| ribonuclease HII [Borrelia valaisiana VS116] Length = 181 Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 107/180 (59%), Gaps = 1/180 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + GIDEVGRG + GP++ AA++ + ++DSKK+ +KRE LY I ++ + + Sbjct: 2 ICGIDEVGRGCIFGPILSAAVVFKKKPSFVKELDDSKKLKKEKREYLYSLILENSYYAFA 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S+ I+K NIH A+L A+ A ENL++ +DG+ +P+ A+IKGDSI Sbjct: 62 EISNITIEKINIHNASLLAMQTAYENLKLNCSLVFVDGKFVPKITAKTVKAIIKGDSIID 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR F+ + Sbjct: 122 EIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFKLI 181 >gi|219684853|ref|ZP_03539795.1| ribonuclease HII [Borrelia garinii PBr] gi|219685363|ref|ZP_03540182.1| ribonuclease HII [Borrelia garinii Far04] gi|219671798|gb|EED28853.1| ribonuclease HII [Borrelia garinii PBr] gi|219673136|gb|EED30156.1| ribonuclease HII [Borrelia garinii Far04] Length = 181 Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 106/180 (58%), Gaps = 1/180 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + GIDEVGRG + GPV+ AA++ N ++DSKK+ +KRE L I ++ + + Sbjct: 2 ICGIDEVGRGCIFGPVLSAAVVFKKKPNFIKELDDSKKLKKEKREYLSSLILENSYYAFA 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S+ I+K NIH ATL A+ A ENL++ +DG+ +P+ A+IKGDSI Sbjct: 62 EISNIIIEKINIHNATLLAMQTAYENLKLNCSLVFVDGKFVPKITAKTVKAIIKGDSIID 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I AASIIAKV RD+L+ K YP Y + GYPT +H+ IK+ G +HR F+ + Sbjct: 122 EIKAASIIAKVKRDKLIDEYDKIYPLYLLRKNKGYPTKEHKNAIKKYGVLSLHRKNFKLI 181 >gi|15594392|ref|NP_212180.1| ribonuclease HII [Borrelia burgdorferi B31] gi|195941785|ref|ZP_03087167.1| ribonuclease H (rnhB) [Borrelia burgdorferi 80a] gi|216264713|ref|ZP_03436705.1| ribonuclease HII [Borrelia burgdorferi 156a] gi|7227916|sp|O51075|RNH2_BORBU RecName: Full=Ribonuclease HII; Short=RNase HII gi|2687927|gb|AAC66435.1| ribonuclease H (rnhB) [Borrelia burgdorferi B31] gi|215981186|gb|EEC21993.1| ribonuclease HII [Borrelia burgdorferi 156a] gi|312148276|gb|ADQ30935.1| ribonuclease HII [Borrelia burgdorferi JD1] Length = 181 Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 107/180 (59%), Gaps = 1/180 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + GIDEVGRG + GP++ AA++ + ++DSKK+ +KRE L I ++ + + Sbjct: 2 ICGIDEVGRGCIFGPILSAAVVFKKKPSFIKELDDSKKLKKEKREYLSSLILENSYYAFA 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S+ I+K NIH A+L A+ A ENL++ L+DG+ +P+ A+IKGDSI Sbjct: 62 EISNITIEKINIHNASLLAMQTAYENLKLNCSLVLVDGKFVPKITAKNVKAIIKGDSIID 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR F+ + Sbjct: 122 EIKAASIIAKVKRDKLMDKYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFKLI 181 >gi|317968686|ref|ZP_07970076.1| ribonuclease HII [Synechococcus sp. CB0205] Length = 191 Score = 207 bits (527), Expect = 9e-52, Method: Composition-based stats. Identities = 68/184 (36%), Positives = 97/184 (52%), Gaps = 6/184 (3%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 +AG+DEVGRG GPV A++L G+ DSK +S K+R +L I A Sbjct: 1 MRIAGVDEVGRGCWFGPVFAGAVVLSDAARETLSAAGLTDSKALSAKRRSQLVPLILEQA 60 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ-VIPRSALIDGRSIPEDLPCQAFAVI 137 ++ AS Q +D I AT A+ A++ L P L+DG V+ Sbjct: 61 ESWALGQASAQEVDGLGIRSATERAMLRALQRLGSPAPDHVLVDGNLPLRLWSGSQETVV 120 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 +GDS L IAAAS++AK RD L+ ++YP YGF+ H GY TA+H+ + GP+ +H Sbjct: 121 RGDSAHLEIAAASVLAKQARDALLVRLGQRYPGYGFERHAGYGTAQHRAAVLSLGPTQLH 180 Query: 198 RLTF 201 R +F Sbjct: 181 RRSF 184 >gi|940885|gb|AAC44577.1| RnhB [Vibrio cholerae C6706] Length = 162 Score = 207 bits (527), Expect = 9e-52, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 98/158 (62%), Gaps = 2/158 (1%) Query: 50 PNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAV 108 PN G+NDSKK+S KKR L+ +I A+ ++ S Q ID+ NI +AT+ A+ AV Sbjct: 1 PNRPIMGLNDSKKLSEKKRLALFPEIQVKALAWAVGRCSPQEIDELNIFQATMVAMQRAV 60 Query: 109 ENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 L++ P LIDG IP+ LP +A AV+KGD I+AASIIAKV RD+ M K+Y Sbjct: 61 AGLRIQPDLVLIDGNKIPK-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQY 119 Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 P +GF +H GYPTA H I++ G HR +F P++ Sbjct: 120 PQFGFANHKGYPTAAHFAAIEQHGVIEQHRKSFGPVKR 157 >gi|149185908|ref|ZP_01864223.1| Ribonuclease H [Erythrobacter sp. SD-21] gi|148830469|gb|EDL48905.1| Ribonuclease H [Erythrobacter sp. SD-21] Length = 211 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 71/188 (37%), Positives = 106/188 (56%), Gaps = 9/188 (4%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + G+DE GRG LAGPVV AA++L P G++DSKK+S KR +L +I ++ Sbjct: 15 LIVGVDEAGRGPLAGPVVAAAVVLCKPC-PGGLDDSKKLSAAKRSKLEPQIQRRCAWGLA 73 Query: 85 SASHQYIDKHNIHKATLDAI----YHAVENLQVIPRSALIDGRSIP----EDLPCQAFAV 136 + ID+ NI AT+ A+ +E L P LIDG P E+ A A+ Sbjct: 74 VVEPEVIDRLNIFGATMLAMTLATQRCIEALGAEPAEVLIDGNMTPHGRREEWRWPARAI 133 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 + GD I+AASI+AK RDR+M A K +P YG++++ GY + H + ++ GP+ + Sbjct: 134 VGGDGKEACISAASILAKEYRDRIMVEAAKAHPHYGWENNKGYGSKSHMEALRLHGPTPL 193 Query: 197 HRLTFRPL 204 HR +F P+ Sbjct: 194 HRRSFAPV 201 >gi|78356141|ref|YP_387590.1| ribonuclease HII [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|97182419|sp|Q313K1|RNH2_DESDG RecName: Full=Ribonuclease HII; Short=RNase HII gi|78218546|gb|ABB37895.1| RNase HII [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 263 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 109/207 (52%), Gaps = 29/207 (14%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF---------GINDSKKISHKKREELYEKITSS 78 GIDE GRG LAGPVV AA+IL P P G+ DSKK+S K+R L I S Sbjct: 43 GIDEAGRGCLAGPVVAAAVILPPAGAPAAPHIAAALSGLTDSKKLSEKRRLTLEPAIKSC 102 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVENL-----------QVIPRSALIDG-RSI 125 A+ + Q ID+ NI +AT A+ AV +L + P +DG ++I Sbjct: 103 AVRWGVGVVWPQVIDRINILQATYRAMSLAVRHLRGGGAAASMPAGLPPVFLAVDGDKTI 162 Query: 126 P-------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 P L A++ GD ++I+AAS++AK RDRLM K+Y YGF +H G Sbjct: 163 PGQVLQAVTGLSVPQEAIVGGDGCVMAISAASVLAKTFRDRLMTALDKRYSGYGFATHKG 222 Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPLR 205 Y TA H + I+ GP +HRL+F ++ Sbjct: 223 YGTAAHIEAIRRLGPCRMHRLSFAKVK 249 >gi|145295936|ref|YP_001138757.1| ribonuclease HII [Corynebacterium glutamicum R] gi|189043588|sp|A4QF39|RNH2_CORGB RecName: Full=Ribonuclease HII; Short=RNase HII gi|140845856|dbj|BAF54855.1| hypothetical protein [Corynebacterium glutamicum R] Length = 209 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 67/188 (35%), Positives = 92/188 (48%), Gaps = 4/188 (2%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITS 77 + PVAG+DE GRGA GP+ +AA IL I + DSK +S RE+L I Sbjct: 3 RNGLGPVAGVDEAGRGACCGPISIAACILPDKPIQELAALTDSKNLSASTREKLMPLIKK 62 Query: 78 SAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 A+ S+ S Q ID+ I A + + AV L P L D +P + Sbjct: 63 HALAWSVIVISAQDIDRFGIQHANISGMRRAVAALDTQPGYVLTDAMKVP-GFTVPYLPI 121 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 I GD+ + IAAAS++AK TRD +M YP YG + H GY T H ++ G S Sbjct: 122 IGGDASARCIAAASVLAKQTRDDIMTDMANDYPHYGLEIHKGYSTKIHMDAVRHHGASPE 181 Query: 197 HRLTFRPL 204 HR ++ + Sbjct: 182 HRYSYANV 189 >gi|111225146|ref|YP_715940.1| ribonuclease HII [Frankia alni ACN14a] gi|123043979|sp|Q0RDP7|RNH2_FRAAA RecName: Full=Ribonuclease HII; Short=RNase HII gi|111152678|emb|CAJ64419.1| Endoribonuclease H. RNase H (RnhB) [Frankia alni ACN14a] Length = 241 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 74/197 (37%), Positives = 111/197 (56%), Gaps = 5/197 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN---NIPFGINDSKKISHKKR 68 F E + + PVAG+DE GRGA AGP+VVAA++L P+ + + DSK ++ + R Sbjct: 15 FGYERALVRCGLGPVAGVDEAGRGACAGPLVVAAVVLGPDGRRRLSPRLADSKLLTEQVR 74 Query: 69 EELYEK-ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E L+++ + ++A S ID+ +H A + + AV L P L DG ++ Sbjct: 75 EGLFDEVLRAAADWSAVVIPAAEIDRTGVHVANITGMRRAVARLGHRPGYVLTDGFAV-A 133 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 ++ AV+KGD ++ IAAASI+AKVTRDR+MR H +Y +Y F H GY TA H Sbjct: 134 GFGTESLAVVKGDRVAACIAAASIVAKVTRDRIMRALHTRYAEYDFAQHKGYVTAAHAAA 193 Query: 188 IKEKGPSCIHRLTFRPL 204 + GP HR ++ + Sbjct: 194 LARYGPCDEHRKSYVNV 210 >gi|313773607|gb|EFS39573.1| ribonuclease HII [Propionibacterium acnes HL074PA1] Length = 204 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 73/195 (37%), Positives = 103/195 (52%), Gaps = 4/195 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELY 72 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L+ Sbjct: 4 ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 63 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A+ +S D+ + +A + + AV L V P L DG + + L Sbjct: 64 NVIMDKALAVSWVGVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-DGLTV 122 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + KGDS+ +AA+ + A+V RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 123 PDLGMWKGDSVCACVAASPLAAQVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKEL 182 Query: 192 GPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 183 GPSRQHRMSYANVRR 197 >gi|324998958|ref|ZP_08120070.1| ribonuclease HII [Pseudonocardia sp. P1] Length = 234 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 5/189 (2%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITS 77 + PVAG+DE GRGA AGP+VVAA +L P + G+ DSK ++ RE Y +I Sbjct: 1 RHGLGPVAGVDEAGRGASAGPLVVAACVLRPADAAALDGLTDSKLLTASAREHWYGRIRK 60 Query: 78 SAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ-VIPRSALIDGRSIPEDLPCQAFA 135 A+ +++ +D+ +H A ++ + AV L V P L DG ++ A A Sbjct: 61 RALDLAVVVIPPAEVDRRGVHIANIEGMRRAVAALTTVPPGYVLTDGFAV-RGFGRPALA 119 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V KGD ++ IAAAS++AKVTRDR+M ++ YGF H GY T +H+ ++ GP Sbjct: 120 VPKGDRVAACIAAASVLAKVTRDRIMTELDAEHAAYGFAVHKGYNTPEHEGALRAHGPCP 179 Query: 196 IHRLTFRPL 204 HR +F + Sbjct: 180 EHRFSFANV 188 >gi|307325020|ref|ZP_07604224.1| Ribonuclease H [Streptomyces violaceusniger Tu 4113] gi|306889166|gb|EFN20148.1| Ribonuclease H [Streptomyces violaceusniger Tu 4113] Length = 233 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 72/197 (36%), Positives = 107/197 (54%), Gaps = 2/197 (1%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R V GIDEVGRGA AGPV V A + P G+ DSK +S K Sbjct: 4 EPPTHSVERSLRATTGAKIVVGIDEVGRGAWAGPVTVCAAVTGLRRPPTGLTDSKLLSPK 63 Query: 67 KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KR L +++ S ++ +S + ID + A A A++ L V P + ++DG+ Sbjct: 64 KRTTLAQELHSWVTAHALGHSSPEEIDGLGMTAALRLAATRALDALPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P VIKGD +S+AAAS+IAKV RD +M ++ D+ F+ + GYP+ H+ Sbjct: 124 YLGTPWAVRTVIKGDQSCVSVAAASVIAKVRRDAMMAELGAEHMDFCFEDNAGYPSPVHR 183 Query: 186 QVIKEKGPSCIHRLTFR 202 ++E GP+ HRL++ Sbjct: 184 AALRELGPTPHHRLSWA 200 >gi|170079067|ref|YP_001735705.1| ribonuclease HII [Synechococcus sp. PCC 7002] gi|169886736|gb|ACB00450.1| ribonuclease HII [Synechococcus sp. PCC 7002] Length = 200 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 75/191 (39%), Positives = 105/191 (54%), Gaps = 17/191 (8%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAI----------ILDPNNIPFGINDSKKISHKKREELY 72 M +AG+DEVGRG L GP I + G+ DSKK+S K+RE L Sbjct: 1 MVLLAGVDEVGRGCLFGP------VVAAVVVVNTIQEQALGELGVTDSKKLSAKRRETLV 54 Query: 73 EKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I + +I+SAS ID+ NI +AT A+ AVE LQ+ P +DGR L Sbjct: 55 PQIQALVTDWAIASASVAEIDQLNILQATFLAMTRAVEKLQIKPTEIFVDGRQTIPKLNY 114 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A+I+GDS +IAAASI+AKV RD+ + + YP+Y ++ GY T KH+Q I + Sbjct: 115 PQQAIIQGDSKVKAIAAASILAKVQRDQDIIQLAEHYPEYDLANNKGYGTQKHRQAIWQY 174 Query: 192 GPSCIHRLTFR 202 G + HR +F+ Sbjct: 175 GLTPHHRQSFK 185 >gi|152989967|ref|YP_001355689.1| ribonuclease HII [Nitratiruptor sp. SB155-2] gi|151421828|dbj|BAF69332.1| ribonuclease HII [Nitratiruptor sp. SB155-2] Length = 182 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 98/179 (54%), Gaps = 8/179 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + GIDE GRG LAGP+V+A ++ + ++DSKK+S + RE+LYEKI ++ +I Sbjct: 3 ICGIDEAGRGPLAGPLVMAGVVFTQR--VYKLDDSKKLSPQAREKLYEKIINATQYTIVI 60 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ-AFAVIKGDSISL 144 + ID+ I + + L + DG S + VIK D Sbjct: 61 IDNDTIDQIGISACISQGLKEIISALHAK--RYIFDGNS---KFGVENIEPVIKADQTIK 115 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + AASI+AKVTRDR+M K+YP+YGF H GY T +H + I+ G S IHR +FRP Sbjct: 116 EVMAASILAKVTRDRIMCEMDKEYPEYGFCKHKGYGTKEHIEAIQRYGFSPIHRKSFRP 174 >gi|51892612|ref|YP_075303.1| ribonuclease HII [Symbiobacterium thermophilum IAM 14863] gi|81388972|sp|Q67PD4|RNH21_SYMTH RecName: Full=Ribonuclease HII 1; Short=RNase HII 1 gi|51856301|dbj|BAD40459.1| ribonuclease HII [Symbiobacterium thermophilum IAM 14863] Length = 259 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 75/189 (39%), Positives = 107/189 (56%), Gaps = 2/189 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + +AGIDEVGRG LAGPVV AA+IL GI ++K++S ++R EL Sbjct: 56 YNYERQLWSMGYRHIAGIDEVGRGPLAGPVVAAAVILPGEVELPGIEEAKRLSDRRRMEL 115 Query: 72 YEKITSSAIISISSAS-HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y +I A+ + ID+ ++ AT A+ AV +L V P LIDG +P ++ Sbjct: 116 YRRIREVAVAVGVGLVQPEGIDEASVVVATYKAMMKAVADLPVTPDYLLIDGVHLP-NVS 174 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 V+ G+++S SIAAA+++AKV RD M KYP YGF H GY T +H+ ++ Sbjct: 175 QPQVPVVGGETLSCSIAAAAVVAKVVRDEYMVEMDAKYPAYGFAHHKGYGTPEHRLALER 234 Query: 191 KGPSCIHRL 199 GP IHR Sbjct: 235 YGPCPIHRK 243 >gi|308810146|ref|XP_003082382.1| putative ribonuclease HII (ISS) [Ostreococcus tauri] gi|116060850|emb|CAL57328.1| putative ribonuclease HII (ISS) [Ostreococcus tauri] Length = 299 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 74/200 (37%), Positives = 116/200 (58%), Gaps = 9/200 (4%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P E + V G+DE GRG LAGPVV AA + + + +NDSK+++ + RE Sbjct: 98 PDRSHEKKHWDAGRHRVVGVDEAGRGPLAGPVVAAACFVPKDCVVDCVNDSKQLTEEGRE 157 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 E++E++ ++ I NI + T++A+ + ++ + LIDG +P+ L Sbjct: 158 EIFEELMANKEI--------EYRGINILECTMEAMTRSALDVPNV-DWVLIDGNRVPKPL 208 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +A A++KGD+ +++IAAASIIAKVTRDR+M K++P YGF H GY T H I Sbjct: 209 EGKAEAIVKGDAKNVAIAAASIIAKVTRDRMMVEIDKEFPMYGFKDHKGYGTKAHMAAID 268 Query: 190 EKGPSCIHRLTFRPLRNLSV 209 + GP HR TF P++++ + Sbjct: 269 KYGPCVYHRKTFAPIKHMDL 288 >gi|192289636|ref|YP_001990241.1| ribonuclease HII [Rhodopseudomonas palustris TIE-1] gi|238692592|sp|B3QHK8|RNH2_RHOPT RecName: Full=Ribonuclease HII; Short=RNase HII gi|192283385|gb|ACE99765.1| Ribonuclease H [Rhodopseudomonas palustris TIE-1] Length = 281 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 89/195 (45%), Positives = 125/195 (64%), Gaps = 1/195 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + ++ +WP+AG DE GRG LAGPVV AA++LDP +P G++DSK++S +KRE Sbjct: 59 PSFRRERALIKRGIWPIAGCDEAGRGPLAGPVVAAAVVLDPKRVPKGLDDSKRLSAEKRE 118 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+E+I ++A +S+ AS + I++ NI +A+L A+ AV L +PR +DGR Sbjct: 119 ALFEEICATAQVSVVYASPERINRDNILRASLWALTRAVHALPDLPRHVFVDGRD-RLAT 177 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C AVI GD + SIAAASIIAKV+RDRLM ++ P YGF+ H GY +H + Sbjct: 178 KCDCEAVIGGDGLIASIAAASIIAKVSRDRLMCKLAEQCPGYGFEQHKGYGVPEHLDALA 237 Query: 190 EKGPSCIHRLTFRPL 204 GP+ HR F P+ Sbjct: 238 RLGPTVHHRRFFAPV 252 >gi|291004125|ref|ZP_06562098.1| ribonuclease HII [Saccharopolyspora erythraea NRRL 2338] Length = 238 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 80/197 (40%), Positives = 116/197 (58%), Gaps = 4/197 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKR 68 ++ L++ + + + PVAG+DE GRGA AGP+VVAA L P G+ DSK +S +R Sbjct: 8 NWALQSALDRRGLGPVAGVDEAGRGACAGPLVVAACALKPGDGRRFEGLTDSKVLSPAER 67 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E LY+ I + A+ +S+ +D IH A L+ + AV L V P L DG +P Sbjct: 68 ERLYDVIQAKALSLSVIVIPADEVDALGIHVANLEGMRRAVAQLSVAPGYVLTDGFRVP- 126 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L + AV+KGD ++ +AAAS++AKVTRDR+M H+++P YGFD H GY T+ H Sbjct: 127 GLGAPSVAVVKGDLVAACVAAASVLAKVTRDRIMTGLHEQFPVYGFDEHKGYCTSDHTAR 186 Query: 188 IKEKGPSCIHRLTFRPL 204 + E GP HR + + Sbjct: 187 LTEHGPCEEHRWCYANV 203 >gi|302874784|ref|YP_003843417.1| Ribonuclease H [Clostridium cellulovorans 743B] gi|307690600|ref|ZP_07633046.1| ribonuclease HII [Clostridium cellulovorans 743B] gi|302577641|gb|ADL51653.1| Ribonuclease H [Clostridium cellulovorans 743B] Length = 261 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 85/196 (43%), Positives = 125/196 (63%), Gaps = 10/196 (5%) Query: 19 REKNMWPV-AGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKKREELY 72 R++ ++ + AG+DEVGRG LAGP+V AA++LD N+ GI DSKK+S KKREEL Sbjct: 67 RDQGVYAITAGVDEVGRGPLAGPIVAAAVVLDLYDLKDENLILGIKDSKKLSAKKREELD 126 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I A+ +I A + ID+ I + A++ L+V P + DG + + C Sbjct: 127 KLIKERAVSYAIGIADNNEIDEKGIAWCNNEVFKRAIKGLKVRPDLVISDGFPV-SGIEC 185 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + KGD++S+SIAAASIIAKV RD +M+ HKKYP+Y F+++VGY T +H + IK Sbjct: 186 ENKYYYKGDNLSISIAAASIIAKVFRDEIMQDYHKKYPNYNFEANVGYGTEEHVRAIKMF 245 Query: 192 GPSCIHRLTFRPLRNL 207 G + IHR++F L+N+ Sbjct: 246 GITPIHRMSF--LKNI 259 >gi|194365030|ref|YP_002027640.1| Ribonuclease H [Stenotrophomonas maltophilia R551-3] gi|194347834|gb|ACF50957.1| Ribonuclease H [Stenotrophomonas maltophilia R551-3] Length = 224 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 76/185 (41%), Positives = 111/185 (60%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-I 81 VAG+DE GRG LAGPV VAA++ DP G++DSK+++ +RE+L+++I A+ Sbjct: 24 RLVAGVDEAGRGPLAGPVAVAAVVFDPARPRINGLDDSKQLTAARREQLHDRIIERALAW 83 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 + ID+ NI++ATL + V + + A IDG +P+ L A A++ GD Sbjct: 84 HVVLVDVDTIDRLNIYQATLQGMRDVVAAVAHVAGFARIDGNVVPKGLVLPAQALVGGDG 143 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I +I AASI+AKV+RDR M H ++P YGF+ H GY T H ++E GP HR +F Sbjct: 144 IDRAIMAASILAKVSRDRYMLDVHSRHPQYGFEQHKGYGTPAHLAALREHGPCVEHRRSF 203 Query: 202 RPLRN 206 P+R Sbjct: 204 APVRE 208 >gi|332298244|ref|YP_004440166.1| Ribonuclease H [Treponema brennaborense DSM 12168] gi|332181347|gb|AEE17035.1| Ribonuclease H [Treponema brennaborense DSM 12168] Length = 197 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 72/192 (37%), Positives = 102/192 (53%), Gaps = 16/192 (8%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + G+DE GRG LAGPV A+IL P+ +NDSKK+S K+R L I A ++ Sbjct: 5 LICGLDEAGRGPLAGPVSAGAVILPPDFPVELLNDSKKLSEKRRAVLESLIKERACWGVA 64 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRS---------------ALIDGRSIPEDL 129 H ID+ NI +A+L A+ A + ++ + A+ DG P D+ Sbjct: 65 LVDHTVIDEINILQASLLAMKLAFDQMRQKLPAFCASRFGSCAQPLVSAIADGTFCP-DI 123 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A K D+ ++ AASI+AK RDR+M + YP YG++ H GYPT H+++ K Sbjct: 124 RVPCVARPKADATESAVMAASILAKTERDRVMIAYGQLYPQYGYEKHKGYPTKAHRELCK 183 Query: 190 EKGPSCIHRLTF 201 GPS I RLTF Sbjct: 184 LLGPSPIQRLTF 195 >gi|257459902|ref|ZP_05625008.1| ribonuclease HII [Campylobacter gracilis RM3268] gi|257442754|gb|EEV17891.1| ribonuclease HII [Campylobacter gracilis RM3268] Length = 187 Score = 204 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 61/185 (32%), Positives = 95/185 (51%), Gaps = 5/185 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDE GRG LAGP+ VA +L G+ DSKK+S K+REELY +I ++ I Sbjct: 3 GQICGIDEAGRGCLAGPLCVAGCVL--QREIAGLADSKKLSEKRREELYARIIENSRYKI 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 S +D+ + A+ + + DG + Q ++K D+ Sbjct: 61 VEISSAQVDEAGLSSCLRSALEQILAYFMGFSGQIIYDGNATFGVRGLQ--TLVKADAQI 118 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 ++AASI+AKVTRDR M ++YP YGF + GY + H I+ G + HR +++ Sbjct: 119 AEVSAASILAKVTRDRTMNELARRYPQYGFAQNKGYGSRAHIAAIERYGLTPFHRASYK- 177 Query: 204 LRNLS 208 +++L Sbjct: 178 IKSLQ 182 >gi|33241107|ref|NP_876049.1| ribonuclease HII [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|39932302|sp|Q7VA11|RNH2_PROMA RecName: Full=Ribonuclease HII; Short=RNase HII gi|33238637|gb|AAQ00702.1| Ribonuclease HII [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 191 Score = 204 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 102/180 (56%), Gaps = 5/180 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILD---PNNIP-FGINDSKKISHKKREELYEKITSSA-II 81 AG+DEVGRGAL GPV A+ILD + + G+ DSKK+S KR L I + Sbjct: 7 AGLDEVGRGALFGPVFAGAVILDNQAEDQLIDAGLKDSKKLSALKRSNLVPLIKKISHCW 66 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 +I +S + ID I AT A+ AV L+ P LIDG + VIKG+ Sbjct: 67 AIGQSSAREIDLLGIRNATEKAMIRAVHRLEKQPDVLLIDGCLNLRLWHGEQKTVIKGED 126 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + SIAAAS++AKV RD L++ +KYP YG + HVGY TA H+ I + G + +HR TF Sbjct: 127 LYPSIAAASVLAKVARDDLIKRMAEKYPQYGLEKHVGYGTALHRAAISKFGKTKLHRKTF 186 >gi|256390717|ref|YP_003112281.1| ribonuclease H [Catenulispora acidiphila DSM 44928] gi|256356943|gb|ACU70440.1| Ribonuclease H [Catenulispora acidiphila DSM 44928] Length = 224 Score = 204 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 71/200 (35%), Positives = 111/200 (55%), Gaps = 4/200 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69 + E + VAG DE GRGA AGP+V AA+IL P G++DSK ++ + R+ Sbjct: 22 YGYERALARAGFAQVAGTDEAGRGACAGPLVAAAVILRPGASGRIPGLSDSKLLTERARD 81 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + +I A+ + + +D +H+A ++A+ +V L V P L DG + + Sbjct: 82 RVRVEIEKRALSYAWVAIPAPEVDSRGLHQANIEALRRSVARLDVAPDYVLSDGFRV-DG 140 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LPC + A+ KGD ++ +AAAS++AK RD +M +++P YGF+ H GY T HQ + Sbjct: 141 LPCPSLAMWKGDQVAACVAAASVLAKTVRDAMMTELAQRHPAYGFEIHKGYSTPAHQAAL 200 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 E GP HR T+ + N+S Sbjct: 201 TEHGPCPEHRFTYANVANVS 220 >gi|39934109|ref|NP_946385.1| ribonuclease HII [Rhodopseudomonas palustris CGA009] gi|81563831|sp|Q6NAZ6|RNH2_RHOPA RecName: Full=Ribonuclease HII; Short=RNase HII gi|39647957|emb|CAE26477.1| possible ribonuclease HII [Rhodopseudomonas palustris CGA009] Length = 304 Score = 204 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 89/195 (45%), Positives = 125/195 (64%), Gaps = 1/195 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + ++ +WP+AG DE GRG LAGPVV AA++LDP +P G++DSK++S +KRE Sbjct: 82 PSFRRERALIKRGIWPIAGCDEAGRGPLAGPVVAAAVVLDPKRVPKGLDDSKRLSAEKRE 141 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+E+I ++A +S+ AS + I++ NI +A+L A+ AV L +PR +DGR Sbjct: 142 ALFEEICATAQVSVVYASPERINRDNILRASLWALTRAVHALPDLPRHVFVDGRD-RLAT 200 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C AVI GD + SIAAASIIAKV+RDRLM ++ P YGF+ H GY +H + Sbjct: 201 QCDCEAVIGGDGLIASIAAASIIAKVSRDRLMCKLAEQCPGYGFEQHKGYGVPEHLDALA 260 Query: 190 EKGPSCIHRLTFRPL 204 GP+ HR F P+ Sbjct: 261 RLGPTVHHRRFFAPV 275 >gi|298707143|emb|CBJ29916.1| conserved unknown protein [Ectocarpus siliculosus] Length = 350 Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 80/221 (36%), Positives = 113/221 (51%), Gaps = 29/221 (13%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS-HKKREELYE 73 E + V G+DE GRG AGPVV AA ++ P+ GI DSKKI+ H RE L++ Sbjct: 121 ENRKLAEGFDAVIGVDEAGRGPFAGPVVAAACMIPPDVNILGIQDSKKITQHSDRETLFK 180 Query: 74 KITSS--AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI----------------- 114 ++T + + + S ID+ NI +AT +A+ + V + Sbjct: 181 ELTETPGVVWAASEVGSSRIDEINILEATKEAMTNCVLEVCSKSVEASANKSTNTKKKKN 240 Query: 115 ----PRSALIDGRSIPEDL---PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 L+DG P L +A V+ GD + IAAASIIAKVTRDRLM ++ Sbjct: 241 TSDKKPFVLVDGNFTPPGLGDAKVEAECVVGGDGLEYCIAAASIIAKVTRDRLMIEFGER 300 Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNLS 208 +P +GF+ H GY TA H+ I+E G IHR +F L+N+ Sbjct: 301 WPVFGFERHKGYGTAAHRDAIREHGMVEIHRRSF--LKNME 339 >gi|291288314|ref|YP_003505130.1| Ribonuclease H [Denitrovibrio acetiphilus DSM 12809] gi|290885474|gb|ADD69174.1| Ribonuclease H [Denitrovibrio acetiphilus DSM 12809] Length = 184 Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 100/179 (55%), Gaps = 2/179 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 + GIDEVGRG LAGPVV A++L N + DSKKIS KKR+ + + ++AI Sbjct: 1 MLIVGIDEVGRGCLAGPVVAGAVLLPENFSDERLVDSKKISEKKRKIMDGVVRANAIAFG 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I + S++ ID++ I T A+ A+E + V ++D + E + K + Sbjct: 61 IGAVSNEDIDRYGIVPCTKKAMMLALEQISVSYDKVIVDAVKL-EGVKVPLEHPFKAEDK 119 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +AAASIIAKV RD LM H +PDYG+ S+ GY H + IKE G + +HR +F Sbjct: 120 FQCVAAASIIAKVYRDALMTKLHINHPDYGWYSNKGYGAKVHIEKIKEIGLTPLHRRSF 178 >gi|73852875|ref|YP_294159.1| putative ribonuclease [Emiliania huxleyi virus 86] gi|72415591|emb|CAI65828.1| putative ribonuclease [Emiliania huxleyi virus 86] Length = 209 Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 72/193 (37%), Positives = 102/193 (52%), Gaps = 8/193 (4%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKIT--SS 78 V G+DE GRG LAGPVV A + N I DSKK++ K+R E +E +T S+ Sbjct: 18 GDNIVVGVDEAGRGCLAGPVVAGACFVPENEPIHPLIKDSKKMTEKQRMEAFEYLTLNSN 77 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--PCQAFAV 136 S ID NI AT+ A+ + + + AL+DG P+ + Sbjct: 78 IKCYASFIEPYEIDDINILNATMKAMGNVIN--ESGANLALVDGDKTPKMFVDTSEIQTF 135 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC- 195 IKGDS SI+ AS+IAKV+RD M K YP+YGF +H+GY T H I++ GP Sbjct: 136 IKGDSRMYSISCASVIAKVSRDLYMEELSKTYPEYGFANHMGYGTQAHMAAIEKNGPIPF 195 Query: 196 IHRLTFRPLRNLS 208 +HR ++ P++ + Sbjct: 196 VHRYSYAPIKKFT 208 >gi|302335674|ref|YP_003800881.1| RNase HII [Olsenella uli DSM 7084] gi|301319514|gb|ADK68001.1| RNase HII [Olsenella uli DSM 7084] Length = 259 Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 71/191 (37%), Positives = 99/191 (51%), Gaps = 5/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + LE + + G+DEVGRGALAGP+ A+ L I +G+NDSK++S +R L Sbjct: 62 YALEREL--GGEGVIVGVDEVGRGALAGPLTACAVALPGEPIIWGLNDSKQLSPARRGAL 119 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 I AI I ++ ID + A A+ A+ + V LIDG P + Sbjct: 120 GATIAEHAIAIGVAHVEPASIDAVGMSVALRMAMGQAIADAGVDADCVLIDGN--PVHVH 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 Q A++KGD+ IAAASI+AKVTRD LM +YP Y GY + H I+ Sbjct: 178 PQERALVKGDARVACIAAASIVAKVTRDSLMVAYDSEYPGYHLAECKGYGSPAHIDAIRR 237 Query: 191 KGPSCIHRLTF 201 G + IHR++F Sbjct: 238 LGLTPIHRVSF 248 >gi|254519206|ref|ZP_05131262.1| ribonuclease HII [Clostridium sp. 7_2_43FAA] gi|226912955|gb|EEH98156.1| ribonuclease HII [Clostridium sp. 7_2_43FAA] Length = 270 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 81/190 (42%), Positives = 114/190 (60%), Gaps = 8/190 (4%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSS 78 +AG+DEVGRG LAGP+V A+ILD + + +NDSKK+S KKRE L E I Sbjct: 83 HTYIAGVDEVGRGPLAGPIVACAVILDLNVIEDELILWLNDSKKLSEKKREALAEIIKEK 142 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A+ IS +S+ ID+ I + A ++++ P L DG + + + +VI Sbjct: 143 ALAYFISESSNDEIDEKGIAYCNNNIFLEACTSMKIKPELVLSDGY-LIKGINIPNKSVI 201 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD+ S SIAAASI+AKV RD LM+ K+YP Y F+ + GY T+KH + +KE G IH Sbjct: 202 KGDAKSASIAAASILAKVYRDNLMKDYSKEYPHYAFEENAGYGTSKHIEGLKEFGACKIH 261 Query: 198 RLTFRPLRNL 207 R +F L+N+ Sbjct: 262 RRSF--LKNI 269 >gi|283481616|emb|CAZ69732.1| putative ribonuclease [Emiliania huxleyi virus 99B1] Length = 209 Score = 204 bits (519), Expect = 8e-51, Method: Composition-based stats. Identities = 73/193 (37%), Positives = 103/193 (53%), Gaps = 8/193 (4%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKIT--SS 78 V G+DE GRG LAGPVV A + N I DSKK++ K+R E +E +T S+ Sbjct: 18 GDNIVVGVDEAGRGCLAGPVVAGACFVPENEPIHPLIKDSKKMTEKQRMEAFEYLTLNSN 77 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--PCQAFAV 136 S ID NI KAT+ A+ + + + AL+DG P+ + Sbjct: 78 IKCYASFIEPYEIDDINILKATMKAMGNVIN--ESGANLALVDGDKTPKMFVDTSEIQTF 135 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC- 195 IKGDS SI+ AS+IAKV+RD M K YP+YGF +H+GY T H I++ GP Sbjct: 136 IKGDSRMYSISCASVIAKVSRDLYMEELSKTYPEYGFSNHMGYGTQAHMAAIEKNGPIPF 195 Query: 196 IHRLTFRPLRNLS 208 +HR ++ P++ + Sbjct: 196 VHRYSYAPIKKFT 208 >gi|166364262|ref|YP_001656535.1| ribonuclease HII [Microcystis aeruginosa NIES-843] gi|189043628|sp|B0JV09|RNH2_MICAN RecName: Full=Ribonuclease HII; Short=RNase HII gi|166086635|dbj|BAG01343.1| ribonuclease HII [Microcystis aeruginosa NIES-843] Length = 208 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 76/192 (39%), Positives = 106/192 (55%), Gaps = 18/192 (9%) Query: 25 PVAGIDEVGRGALAGPV-----------VVAAIILDPNNIPFGINDSKKISHKKREELYE 73 +AG+DEVGRGAL GPV G+ DSK++S +KR++L Sbjct: 6 LIAGVDEVGRGALFGPVVAAVVVTVPSGFA-------RLWELGVKDSKQLSPQKRQKLSR 58 Query: 74 KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 +I + I A+ + ID+ NI A+L A+ A+ L + P +DG+ I +DL Sbjct: 59 QIQRDFVCRIGYATVKEIDRLNIFHASLLAMSRAIGKLPLSPSLCWVDGKHIIKDLSIPQ 118 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 AVI+GD S IAAASI+AKV RD L+ H++YPDYG H GY TA+H + I G Sbjct: 119 KAVIQGDQQSPVIAAASIVAKVWRDDLITRWHRRYPDYGLARHKGYGTAQHLEAIGNYGL 178 Query: 194 SCIHRLTFRPLR 205 + HRL+F P + Sbjct: 179 TSQHRLSFSPCQ 190 >gi|256419897|ref|YP_003120550.1| ribonuclease H [Chitinophaga pinensis DSM 2588] gi|256034805|gb|ACU58349.1| Ribonuclease H [Chitinophaga pinensis DSM 2588] Length = 220 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 1/190 (0%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 +K++ AG DE GRG LAGPV AA+IL P +NDSK++ R++L E + Sbjct: 3 RSYHQKDIAFEAGCDEAGRGCLAGPVFAAAVILPPKFRNKLLNDSKQLKASDRDKLREVV 62 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 AI +++S + ID+ NI KA+ A++ A++ L+ P L+DG Sbjct: 63 EKEAIAYAVASVDNLEIDRINILKASFRAMHLALDQLKQQPGYILVDGNRFVPYGKTPHA 122 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 ++KGD I SIAAASI+AK RD M H++YP +G+ + GYPT H+ I+ G + Sbjct: 123 CIVKGDGIYASIAAASILAKTYRDEYMHKLHQEYPHFGWLENKGYPTLFHRDAIRAHGET 182 Query: 195 CIHRLTFRPL 204 HR TFR L Sbjct: 183 PYHRKTFRLL 192 >gi|319950993|ref|ZP_08024863.1| ribonuclease HII [Dietzia cinnamea P4] gi|319435336|gb|EFV90586.1| ribonuclease HII [Dietzia cinnamea P4] Length = 235 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 80/199 (40%), Positives = 119/199 (59%), Gaps = 4/199 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKR 68 LEA + + + PVAG+DE GRG+ AGP+VVAA +L P ++DSKK++ R Sbjct: 27 RLALEAALTRRGLGPVAGVDEAGRGSCAGPLVVAACVLGDRLHPELADLDDSKKLTAAAR 86 Query: 69 EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + L++ + A +S+ ID IH+ ++ + AV L P L DG ++ + Sbjct: 87 DRLHDAVLRRARAVSVVVIEPDRIDARGIHRCNIEGMRRAVAALDPRPGFVLTDGFAV-D 145 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L CQ+ AVI GD++ SIAAAS++AKVTRDR+M +YP YGF +H GY T H + Sbjct: 146 GLGCQSTAVIGGDAVVASIAAASVLAKVTRDRIMVDLDSRYPGYGFAAHKGYSTTGHARA 205 Query: 188 IKEKGPSCIHRLTFRPLRN 206 I++ GPS IHR+++ +R Sbjct: 206 IEQLGPSDIHRMSYANVRR 224 >gi|291299696|ref|YP_003510974.1| ribonuclease H [Stackebrandtia nassauensis DSM 44728] gi|290568916|gb|ADD41881.1| Ribonuclease H [Stackebrandtia nassauensis DSM 44728] Length = 211 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 74/196 (37%), Positives = 109/196 (55%), Gaps = 4/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKRE 69 + LE +R + VAG DE GRGA AGP+VVAA IL G+ DSK ++ + RE Sbjct: 2 YVLENALRRRGFTLVAGADEAGRGACAGPLVVAAAILPDGARGQIAGLTDSKLLTERARE 61 Query: 70 ELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 ++Y ++ A+ +I S +D+ + + L + A+ L +P AL DG +P Sbjct: 62 DIYAQVVDRAVAHAIVVISPAEVDRLGVGASNLSGMRRALARLDPMPAYALTDGFPVP-G 120 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LP V KGD ++ +AAAS++AKVTRDR+M + +P YGF H GY TA H + Sbjct: 121 LPVPGLGVWKGDRVAACVAAASVLAKVTRDRIMTELEQNHPGYGFAEHKGYGTAAHTHAL 180 Query: 189 KEKGPSCIHRLTFRPL 204 + GP HRL++ + Sbjct: 181 RTLGPCPQHRLSYANV 196 >gi|87199856|ref|YP_497113.1| ribonuclease H [Novosphingobium aromaticivorans DSM 12444] gi|97189114|sp|Q2G794|RNH2_NOVAD RecName: Full=Ribonuclease HII; Short=RNase HII gi|87135537|gb|ABD26279.1| RNase HII [Novosphingobium aromaticivorans DSM 12444] Length = 196 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 71/200 (35%), Positives = 101/200 (50%), Gaps = 25/200 (12%) Query: 27 AGIDEVGRGALAGP-------VVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 G+DE GRG LAGP + P P G++DSKK+S +R EL EKI Sbjct: 4 IGVDEAGRGPLAGPVVAAAVVL------CKPR--PSGLDDSKKLSAARRAELEEKIKRRC 55 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS------ALIDGRSIP----EDL 129 ++ ID+ NI AT+ A+ AV L L+DG P + Sbjct: 56 RWAVGVVEPDEIDRLNIFGATMLAMTLAVGALCEQLAHDEDVGEVLVDGNLTPHGRRPEW 115 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A ++ GD++ I+AASIIAK RDRLMR A +P YG++ + GY T +H ++ Sbjct: 116 CWPARPIVGGDALEPCISAASIIAKEHRDRLMREAALAHPHYGWERNAGYGTPEHLAALR 175 Query: 190 EKGPSCIHRLTFRPLRNLSV 209 E GP+ +HR +F P+ L + Sbjct: 176 EHGPTPLHRRSFAPVAQLQL 195 >gi|190573489|ref|YP_001971334.1| putative ribonuclease HII [Stenotrophomonas maltophilia K279a] gi|190011411|emb|CAQ45029.1| putative ribonuclease HII [Stenotrophomonas maltophilia K279a] Length = 223 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 76/185 (41%), Positives = 112/185 (60%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-I 81 VAG+DE GRG LAGPV VAA++ DP G++DSK+++ +RE+L+++I A+ Sbjct: 24 RLVAGVDEAGRGPLAGPVAVAAVVFDPARPRINGLDDSKQLTAARREQLHDRIIERALAW 83 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 + ID+ NI++ATL + V + + A IDG +P+ L A A++ GD Sbjct: 84 HVVLVDVDTIDRLNIYQATLQGMRDVVAAVAHVAGFARIDGNVVPKGLVLPAQALVGGDG 143 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I +I AASI+AKV+RDR M+ H ++P YGF+ H GY T H ++E GP HR +F Sbjct: 144 IDRAIMAASILAKVSRDRYMQDVHARHPQYGFEHHKGYGTPAHLAALREHGPCMEHRRSF 203 Query: 202 RPLRN 206 P+R Sbjct: 204 APVRE 208 >gi|239982734|ref|ZP_04705258.1| ribonuclease HII [Streptomyces albus J1074] gi|291454583|ref|ZP_06593973.1| ribonuclease HII [Streptomyces albus J1074] gi|291357532|gb|EFE84434.1| ribonuclease HII [Streptomyces albus J1074] Length = 233 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 71/202 (35%), Positives = 105/202 (51%), Gaps = 2/202 (0%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R VAG+DEVGRGA AGPV V A + P G+ DSK ++ K Sbjct: 4 ESPTHTVERSLRATTGAKIVAGVDEVGRGAWAGPVSVCAAVTGLRRAPEGLTDSKLLAPK 63 Query: 67 KREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R L ++ + +S + ID + A A A+E L V P + ++DG+ Sbjct: 64 RRTALAGELEGWVTAYAFGHSSPEEIDDLGMTAALRLAAVRALEGLPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + VIKGD + +AAAS++AKV RD +M + D+ F + GYP+ HQ Sbjct: 124 YLGAPWKVRTVIKGDQSCVCVAAASVLAKVRRDAMMAELGVGHEDFCFADNAGYPSPAHQ 183 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 + E+GP+ HRL++ L L Sbjct: 184 AALAERGPTPYHRLSWAYLDAL 205 >gi|121998236|ref|YP_001003023.1| ribonuclease HII [Halorhodospira halophila SL1] gi|189043603|sp|A1WX09|RNH2_HALHL RecName: Full=Ribonuclease HII; Short=RNase HII gi|121589641|gb|ABM62221.1| RNase HII [Halorhodospira halophila SL1] Length = 195 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 76/191 (39%), Positives = 106/191 (55%), Gaps = 5/191 (2%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 + W V G+DE GRG AGP V A + G+ DSK++S + RE I S A Sbjct: 4 SRGAWGVVGVDEAGRGPWAGP--VVAAAVVLAEPIAGVTDSKRLSARSRERAAALIRSEA 61 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQV--IPRSALIDGRSIPEDLPCQAFAV 136 + + A ID NI +AT A+ AV + L+DGR IP+DLP A V Sbjct: 62 VAWGVGRADVTEIDALNIRRATFLAMARAVAVVAETSPIAEVLVDGREIPDDLPAPARPV 121 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 + GD++ +I+AASI+AK RD M + + YP YGF H GY TA+H++ ++E GP + Sbjct: 122 VGGDALEPAISAASILAKTLRDAEMVLLDEAYPGYGFGRHKGYGTAEHRRALEELGPCPM 181 Query: 197 HRLTFRPLRNL 207 HR +F P+R L Sbjct: 182 HRRSFAPVRRL 192 >gi|318042659|ref|ZP_07974615.1| ribonuclease HII [Synechococcus sp. CB0101] Length = 200 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 68/185 (36%), Positives = 99/185 (53%), Gaps = 6/185 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS 78 + +AG+DEVGRG GPV A+IL + G+ DSKK++ ++R +L I Sbjct: 9 LQRIAGVDEVGRGCWFGPVFAGAVILPASARSALAAAGLTDSKKLTARRRAQLVPLIQQH 68 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ-VIPRSALIDGRSIPEDLPCQAFAV 136 A ++ AS + ID+ I AT A+ A++ L P L+DG V Sbjct: 69 AESWALGQASAREIDQVGIRAATERAMLRALQRLSAPPPGLVLVDGVLPLRLWEGPQQTV 128 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 ++GDS L IAAAS++AK RD L+ +YP YG + H GY TA H+ + E GP+ + Sbjct: 129 VRGDSEHLEIAAASVLAKQARDALITRLAARYPAYGLERHAGYGTALHRAAVLEAGPTPL 188 Query: 197 HRLTF 201 HR +F Sbjct: 189 HRRSF 193 >gi|317121802|ref|YP_004101805.1| ribonuclease H [Thermaerobacter marianensis DSM 12885] gi|315591782|gb|ADU51078.1| Ribonuclease H [Thermaerobacter marianensis DSM 12885] Length = 327 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 79/184 (42%), Positives = 109/184 (59%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG LAGPVV AA+IL + G++DSK++ R+ L + A+ + Sbjct: 112 GRVAGVDEVGRGCLAGPVVAAAVILSGDACLPGLDDSKRLKPAARDGLAAAVRRQALAWA 171 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A+ ID NI AT A+ A++ L V P+ ++DGRS P DL AV+ GD+ Sbjct: 172 VGIATPAEIDALNIWHATRLAMRRALDALPVPPQRVVVDGRS-PGDLGYPVEAVVDGDAR 230 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAAS++AKV RD M + YP YGF H GY TA+H+Q + GP HR +F Sbjct: 231 FAAIAAASVVAKVFRDAWMARLDRVYPVYGFARHKGYATAEHRQALALYGPCPEHRRSFL 290 Query: 203 PLRN 206 P+R Sbjct: 291 PVRQ 294 >gi|298530722|ref|ZP_07018124.1| Ribonuclease H [Desulfonatronospira thiodismutans ASO3-1] gi|298510096|gb|EFI34000.1| Ribonuclease H [Desulfonatronospira thiodismutans ASO3-1] Length = 214 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 73/198 (36%), Positives = 103/198 (52%), Gaps = 24/198 (12%) Query: 20 EKNMWPV--AGIDEVGRGALAGPVVVAAIILDP---------NNIPFGINDSKKISHKKR 68 + PV AG+DE GRG LAG + + DSKKI+ K R Sbjct: 14 QSGFDPVPPAGLDEAGRGCLAG---------PVVAAVVVLPLDAQIARLTDSKKITSKVR 64 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-SIP 126 E L +I S+ + S+ A + ID+ NI +AT+ A+ AV +L + P L+DG IP Sbjct: 65 ESLIPEIKSTCLAWSLGLAWPREIDRINILQATMTAMKRAVLHLGLTPGQLLVDGNQKIP 124 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 ++P ++ GD I+AASI+AK RD LM ++YP YGF H GY T KH Q Sbjct: 125 LNIP--QKCIVGGDMTEPCISAASILAKTFRDMLMTKLDRRYPGYGFGQHKGYGTRKHLQ 182 Query: 187 VIKEKGPSCIHRLTFRPL 204 +K G S +HR +F+ + Sbjct: 183 ALKSLGASPMHRKSFKGV 200 >gi|72382906|ref|YP_292261.1| ribonuclease HII [Prochlorococcus marinus str. NATL2A] gi|97189164|sp|Q46IX0|RNH2_PROMT RecName: Full=Ribonuclease HII; Short=RNase HII gi|72002756|gb|AAZ58558.1| RNase HII [Prochlorococcus marinus str. NATL2A] Length = 195 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 68/182 (37%), Positives = 102/182 (56%), Gaps = 5/182 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI 80 +AG+DEVG+G L GPV AA+IL N G+ DSKK+S ++R L I +++I Sbjct: 7 LIAGVDEVGKGCLFGPVFAAAVILSKKNEIELLNQGLKDSKKLSQRQRHNLVPLIKTNSI 66 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 +I AS + ID I AT A+ A+E P L+DG P + ++G Sbjct: 67 AWTIGQASAREIDVMGIRDATEKAMLRALEKFSSPPDLILVDGILPIRLWPGKQKTQVRG 126 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 +S SIAAAS++AK TRD L++ +KY YG + + GY T H+ + ++G + +HR Sbjct: 127 ESHFASIAAASVLAKETRDELIKRLARKYNCYGLEKNKGYGTEIHRTKLIKEGATKLHRK 186 Query: 200 TF 201 +F Sbjct: 187 SF 188 >gi|257055033|ref|YP_003132865.1| RNase HII [Saccharomonospora viridis DSM 43017] gi|256584905|gb|ACU96038.1| RNase HII [Saccharomonospora viridis DSM 43017] Length = 275 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 77/194 (39%), Positives = 111/194 (57%), Gaps = 4/194 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKR 68 + L+A + + + PV G+DE GRGA AGP+VVAA +L P + + DSK ++ R Sbjct: 16 SWALQAALDRRGLGPVVGVDEAGRGACAGPLVVAACVLRPGDGAKLPELADSKSLTPLAR 75 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + +YE+I A+ SI ID +H A ++ + AV L P L+DG +P Sbjct: 76 DRVYERILRRALDYSIVVIPPAEIDVQGVHTANIEGMRRAVAALSQRPGYVLLDGFRVP- 134 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP + V+KGD +AAAS++AKVTRDR+M H +YP YGF+ H GY T +H+ Sbjct: 135 GLPAPSVPVLKGDRAVACVAAASVLAKVTRDRIMVGLHAEYPVYGFEVHKGYTTVEHRTA 194 Query: 188 IKEKGPSCIHRLTF 201 + E GP HR +F Sbjct: 195 LAEHGPCEAHRWSF 208 >gi|88807950|ref|ZP_01123461.1| Ribonuclease HII and HIII [Synechococcus sp. WH 7805] gi|88787989|gb|EAR19145.1| Ribonuclease HII and HIII [Synechococcus sp. WH 7805] Length = 194 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 68/181 (37%), Positives = 102/181 (56%), Gaps = 5/181 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA-I 80 + G+DEVGRG L GPV AA+ L + G+ DSK +S ++R +L +I + A Sbjct: 2 IVGVDEVGRGCLFGPVFAAAVSLTESAAAELTALGLTDSKALSARRRVDLVPQIQAKASA 61 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 ++ S + ID H I AT A+ A++ L P L+DG ++++GD Sbjct: 62 WALGQGSAREIDAHGIRVATELAMLRALQKLPKHPELVLVDGVLPLRLWAGDQRSIVRGD 121 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S SIAAAS++AKVTRD LM+ +++P YG + H GY T H+Q + GP+ +HR + Sbjct: 122 SKEASIAAASVLAKVTRDGLMQRLAERFPGYGLERHAGYGTVLHRQSLLAAGPTSMHRRS 181 Query: 201 F 201 F Sbjct: 182 F 182 >gi|16329251|ref|NP_439979.1| ribonuclease HII [Synechocystis sp. PCC 6803] gi|7227925|sp|P72657|RNH2_SYNY3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|1651731|dbj|BAA16659.1| ribonuclease HII [Synechocystis sp. PCC 6803] Length = 190 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 72/177 (40%), Positives = 105/177 (59%), Gaps = 5/177 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI-I 81 AG+DEVGRGAL GPVV AA+++ I G+ DSK++S + R +L + + Sbjct: 2 AGVDEVGRGALFGPVVAAAVLVPIEAINQLQALGVKDSKQLSPQHRSQLAQALPDYVHSY 61 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 IS A I++ NI +A+L A+ AV+ L V+P L+DGR + AV GD Sbjct: 62 GISFADVPTINRVNIRQASLLAMERAVQKLPVMPAWVLVDGRDTLPHIAMAQMAVTGGDR 121 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 SL I+AASI+AKV RD L+ +++P Y S+ GY TAKH+Q +++ G + +HR Sbjct: 122 KSLLISAASILAKVWRDTLITRLAERFPGYDLASNKGYGTAKHRQGLRQYGATPLHR 178 >gi|326387694|ref|ZP_08209300.1| ribonuclease H [Novosphingobium nitrogenifigens DSM 19370] gi|326207740|gb|EGD58551.1| ribonuclease H [Novosphingobium nitrogenifigens DSM 19370] Length = 198 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 73/189 (38%), Positives = 104/189 (55%), Gaps = 9/189 (4%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 V G+DE GRG LAGPVV AA+IL P G+ DSKK++ ++R L I + + Sbjct: 5 GLVVGVDEAGRGPLAGPVVAAAVILGAGA-PQGLADSKKLTARRRAWLEVGIKETCRWGL 63 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENL----QVIPRSALIDGRSIP----EDLPCQAFA 135 ID+ NI AT+ A+ AV +L + LIDG P A A Sbjct: 64 GVVEADEIDRINIFAATMKAMTLAVADLLDRDGGVVEMVLIDGNKTPAGRDPGWVWPARA 123 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 ++ GD+ +I+AASI+AK RDR+MR A +K+P YG++ + GY T +H ++E GP Sbjct: 124 IVGGDATEAAISAASILAKEHRDRIMRDAAQKWPQYGWERNAGYGTPEHLAALREHGPCV 183 Query: 196 IHRLTFRPL 204 HR +F P+ Sbjct: 184 FHRRSFAPV 192 >gi|124026648|ref|YP_001015763.1| ribonuclease HII and HIII [Prochlorococcus marinus str. NATL1A] gi|166226636|sp|A2C4T9|RNH2_PROM1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|123961716|gb|ABM76499.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. NATL1A] Length = 195 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 69/182 (37%), Positives = 103/182 (56%), Gaps = 5/182 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI 80 +AG+DEVG+G L GPV AA+IL N G+ DSKK+SH++R L I +++I Sbjct: 7 LIAGVDEVGKGCLFGPVFAAAVILSKENEIELLNQGLKDSKKLSHRQRHNLVPLIKTNSI 66 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 +I AS + ID I AT A+ A+E P L+DG P + ++G Sbjct: 67 AWTIGQASAREIDVIGIRDATEKAMLRALEKFSSPPDLILVDGILPIRLWPGKQKTQVRG 126 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 +S SIAAAS++AK TRD L++ +KY YG + + GY T H+ + ++G + +HR Sbjct: 127 ESHFASIAAASVLAKETRDELIKRLARKYNCYGLEKNKGYGTEIHRTNLIKEGATKLHRK 186 Query: 200 TF 201 +F Sbjct: 187 SF 188 >gi|262167732|ref|ZP_06035434.1| ribonuclease HII [Vibrio cholerae RC27] gi|262023797|gb|EEY42496.1| ribonuclease HII [Vibrio cholerae RC27] Length = 157 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 70/153 (45%), Positives = 95/153 (62%), Gaps = 2/153 (1%) Query: 55 FGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQV 113 G+NDSKK+S KKR L+ +I A+ ++ S Q ID+ NI +AT+ A+ AV L++ Sbjct: 1 MGLNDSKKLSEKKRLALFPEIQVKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRI 60 Query: 114 IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 P LIDG IP+ LP +A AV+KGD I+AASIIAKV RD+ M K+YP +GF Sbjct: 61 QPDLVLIDGNKIPK-LPMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGF 119 Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 H GYPTA H I++ G HR +F P++ Sbjct: 120 AKHKGYPTAAHFAAIEQHGVIEQHRKSFGPVKR 152 >gi|157164148|ref|YP_001467724.1| ribonuclease HII [Campylobacter concisus 13826] gi|189043572|sp|A7ZG16|RNH2_CAMC1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|112800307|gb|EAT97651.1| ribonuclease HII [Campylobacter concisus 13826] Length = 184 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 100/179 (55%), Gaps = 7/179 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M + GIDE GRGALAGP+ VAA +L N+ G+NDSKK++ K+REEL++KIT S+ Sbjct: 1 MAKICGIDEAGRGALAGPLSVAACVL--NSEISGLNDSKKLTAKRREELFKKITKSSNFL 58 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ S+ ID+ + + A+ + + + DG D +IK D Sbjct: 59 IAYFSNAQIDELGLSECLRRALKLFKAHFESF--EIIYDGN---LDYGVGITTMIKADGK 113 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++AASI+AKV+RDRLM K YP YGF H GY T H I + G S HR +F Sbjct: 114 VAGVSAASILAKVSRDRLMNGWDKFYPAYGFAGHKGYGTKSHLDAIAKFGYSDFHRKSF 172 >gi|282856252|ref|ZP_06265535.1| ribonuclease HII [Pyramidobacter piscolens W5455] gi|282586011|gb|EFB91296.1| ribonuclease HII [Pyramidobacter piscolens W5455] Length = 186 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 69/187 (36%), Positives = 103/187 (55%), Gaps = 11/187 (5%) Query: 24 WPVAGIDEVGRGALAGP-------VVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 + G+DE GRG LAGP + A + + G+ DSKK++ +RE+++ ++ Sbjct: 1 MILVGVDEAGRGPLAGPVVAAAVVLTEA---QREDLVGLGLRDSKKMTPPRREKVFARML 57 Query: 77 S-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 + + +SA + ID+ NI +ATL A+ AVE L + ++DG L A Sbjct: 58 ELNVVWRAASAPAERIDRLNILRATLWAMRRAVEKLPLDVDGVIVDGNQEIPGLSVYQQA 117 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 +I GD I I+AAS++AKV RDR+M + YPDY F H GY T H++ I E GP+ Sbjct: 118 IIGGDDIYPQISAASVVAKVLRDRVMTVYDGIYPDYDFARHKGYGTEAHRRAIAELGPTP 177 Query: 196 IHRLTFR 202 IHR +F Sbjct: 178 IHRRSFS 184 >gi|152993838|ref|YP_001359559.1| ribonuclease HII [Sulfurovum sp. NBC37-1] gi|189043667|sp|A6QCJ3|RNH2_SULNB RecName: Full=Ribonuclease HII; Short=RNase HII gi|151425699|dbj|BAF73202.1| ribonuclease HII [Sulfurovum sp. NBC37-1] Length = 188 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 66/183 (36%), Positives = 94/183 (51%), Gaps = 7/183 (3%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 P+ GIDE GRG LAG +V+A ++L G+ DSKK++ K+RE LY + +A I Sbjct: 7 PLCGIDEAGRGPLAGALVMAGVVLKK--PIDGLMDSKKLTEKRREALYTIVLENAEYHIV 64 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S S + +D I K + L L DG S ++K D Sbjct: 65 SFSAKEVDDLGISKCLQKGLQSIQNALDG--CKYLFDGNSTFGV--DNVSTMVKADDKVP 120 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 ++AASI+AKVTRDR M + YP+YGF+ H GY T H + + + IHR +FR + Sbjct: 121 EVSAASILAKVTRDREMIKMAEIYPEYGFEKHKGYGTKAHIEALMKYDRCEIHRRSFR-V 179 Query: 205 RNL 207 + L Sbjct: 180 KGL 182 >gi|83594539|ref|YP_428291.1| ribonuclease HII [Rhodospirillum rubrum ATCC 11170] gi|97189243|sp|Q2RPE1|RNH2_RHORT RecName: Full=Ribonuclease HII; Short=RNase HII gi|83577453|gb|ABC24004.1| Ribonuclease H [Rhodospirillum rubrum ATCC 11170] Length = 218 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 80/204 (39%), Positives = 113/204 (55%), Gaps = 11/204 (5%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKIS 64 P LE + VAG+DEVGRG LAGPVV AA+++D + ++DSKK+S Sbjct: 1 MPDLSLERACGGR----VAGVDEVGRGPLAGPVVAAAVVIDAGRADPALLARLDDSKKLS 56 Query: 65 HKKREELYEKITSS--AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 R+ L + + + + AS ID+ NI +AT A+ A+ L AL+DG Sbjct: 57 AALRQRLATALLADPGVEVGLGEASVAEIDRINILQATFLAMGRALAKLAPPVDLALVDG 116 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 +P LPC AV++GD +SLSIAAASI+AKV RD M + P YG++ + GY TA Sbjct: 117 NRLPP-LPCPGQAVVRGDGLSLSIAAASIVAKVHRDAAMATLAQALPGYGWERNAGYGTA 175 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRN 206 +H + G + HR +F P+R Sbjct: 176 EHLAALDRLGATPHHRASFAPVRE 199 >gi|154148444|ref|YP_001406026.1| ribonuclease HII [Campylobacter hominis ATCC BAA-381] gi|189043574|sp|A7I0I5|RNH2_CAMHC RecName: Full=Ribonuclease HII; Short=RNase HII gi|153804453|gb|ABS51460.1| ribonuclease HII [Campylobacter hominis ATCC BAA-381] Length = 185 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 66/177 (37%), Positives = 94/177 (53%), Gaps = 6/177 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + GIDE GRG LAGP+ +A IL N G+ DSKK+S K+RE LYE+I ++ I Sbjct: 3 ICGIDEAGRGPLAGPLHIAGCIL--NKQIEGLKDSKKLSEKRREILYEEIIKNSTYKIVK 60 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF-AVIKGDSISL 144 S IDK + K + V+ + DG S + F ++K D Sbjct: 61 FSAAQIDKFGLSKCLKLGLNELVDFFAPFEVKIIFDGNS---KFGAEGFETMVKADDKIK 117 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++AASI+AKV+RDR+MR K+P Y F + GY + H + I++ G IHR +F Sbjct: 118 EVSAASILAKVSRDRVMRNFDIKFPFYDFAKNKGYGSKAHIEAIQKYGYCEIHRKSF 174 >gi|150016066|ref|YP_001308320.1| ribonuclease HII [Clostridium beijerinckii NCIMB 8052] gi|189043579|sp|A6LSN4|RNH2_CLOB8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|149902531|gb|ABR33364.1| Ribonuclease H [Clostridium beijerinckii NCIMB 8052] Length = 270 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 86/216 (39%), Positives = 126/216 (58%), Gaps = 20/216 (9%) Query: 5 SIPERPHFELEAMVRE--------------KNMWPVAGIDEVGRGALAGPVVVAAIILD- 49 S+ E+ +LE+ + E + +AG+DEVGRG LAGP+V ++ILD Sbjct: 51 SLKEKIEKDLESYLNEVKRVKTMYEFDKSFGSYRYIAGVDEVGRGPLAGPIVACSVILDL 110 Query: 50 ---PNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIY 105 ++ INDSKK+ KREEL E I A+ I+ +S++ ID+ I A Sbjct: 111 NVLEKDLILYINDSKKVKEHKREELSEIIKEKALSYQIAVSSNKEIDEKGIAFANNKVFL 170 Query: 106 HAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165 + +L + P L DG + +++ + +VIKGD+ S SIAAASI+AKV RDRLM+ Sbjct: 171 ESCNSLSIKPDLVLSDGY-LIKNIGIENKSVIKGDTKSASIAAASIVAKVYRDRLMKEYA 229 Query: 166 KKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 KKYP Y F+++VGY T+KH + +K+ G S IHR +F Sbjct: 230 KKYPHYDFENNVGYGTSKHIEGLKKYGKSDIHRNSF 265 >gi|159904166|ref|YP_001551510.1| ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9211] gi|159889342|gb|ABX09556.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9211] Length = 196 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 68/181 (37%), Positives = 109/181 (60%), Gaps = 5/181 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI- 80 +AG+DEVG+G L GPV AA++L+ ++ G+ DSK ++ KR +L+ +I A Sbjct: 7 IAGLDEVGKGCLFGPVFAAAVMLNNSSENQLLDAGLKDSKLLTKAKRAQLFPEILKLADN 66 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I AS + ID I KAT A+ A+ L + P LIDG +I+G+ Sbjct: 67 WGIGQASAKEIDSQGIRKATEKAMLRAIHKLTIHPSLLLIDGSLPLRLWKGNQENLIRGE 126 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S S +IAAAS+IAK +RD++++ K++P YG +++VGY T+ H++ + + GP+ +HR + Sbjct: 127 SKSPAIAAASVIAKESRDQVIKRLAKQFPGYGLETNVGYGTSNHRKALIKSGPTQLHRKS 186 Query: 201 F 201 F Sbjct: 187 F 187 >gi|330466295|ref|YP_004404038.1| ribonuclease H [Verrucosispora maris AB-18-032] gi|328809266|gb|AEB43438.1| ribonuclease H [Verrucosispora maris AB-18-032] Length = 270 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 71/200 (35%), Positives = 110/200 (55%), Gaps = 4/200 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69 + LE ++ + VAG DE GRGA AGP+V AA +L G+ DSK ++ RE Sbjct: 16 YALERALQRRGFRYVAGADEAGRGACAGPLVAAAAVLPEGRRGEIDGLADSKLLTPASRE 75 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +Y+++ + A+ ++ + +D +H L A+ A+ +L V P L DG + + Sbjct: 76 RVYDEVVARALAYAVVVIPAEEVDARGLHVCNLAAMRRALASLTVRPEYVLTDGFGV-DG 134 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L AV KGD ++ +AAAS++AKVTRDR+M ++P YGF H GY TA H + Sbjct: 135 LDVPGLAVWKGDRVAACVAAASVLAKVTRDRIMVDLDAEHPGYGFAEHKGYITADHTAAL 194 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 +E GP HR ++ + +S Sbjct: 195 REHGPCREHRFSYVNVAAVS 214 >gi|134102484|ref|YP_001108145.1| ribonuclease HII [Saccharopolyspora erythraea NRRL 2338] gi|189043652|sp|A4FME5|RNH2_SACEN RecName: Full=Ribonuclease HII; Short=RNase HII gi|133915107|emb|CAM05220.1| ribonuclease HII [Saccharopolyspora erythraea NRRL 2338] Length = 228 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 79/194 (40%), Positives = 114/194 (58%), Gaps = 4/194 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREEL 71 +++ + + + PVAG+DE GRGA AGP+VVAA L P G+ DSK +S +RE L Sbjct: 1 MQSALDRRGLGPVAGVDEAGRGACAGPLVVAACALKPGDGRRFEGLTDSKVLSPAERERL 60 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I + A+ +S+ +D IH A L+ + AV L V P L DG +P L Sbjct: 61 YDVIQAKALSLSVIVIPADEVDALGIHVANLEGMRRAVAQLSVAPGYVLTDGFRVP-GLG 119 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + AV+KGD ++ +AAAS++AKVTRDR+M H+++P YGFD H GY T+ H + E Sbjct: 120 APSVAVVKGDLVAACVAAASVLAKVTRDRIMTGLHEQFPVYGFDEHKGYCTSDHTARLTE 179 Query: 191 KGPSCIHRLTFRPL 204 GP HR + + Sbjct: 180 HGPCEEHRWCYANV 193 >gi|152965373|ref|YP_001361157.1| ribonuclease H [Kineococcus radiotolerans SRS30216] gi|189043607|sp|A6W7V4|RNH2_KINRD RecName: Full=Ribonuclease HII; Short=RNase HII gi|151359890|gb|ABS02893.1| Ribonuclease H [Kineococcus radiotolerans SRS30216] Length = 262 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 71/219 (32%), Positives = 99/219 (45%), Gaps = 26/219 (11%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKK 67 P LE VAG+DEVGRG+LAGPV V +++D P G+ DSK ++ Sbjct: 10 PSLRLERQFLRAGHALVAGVDEVGRGSLAGPVSVGVLVVDAATRTAPTGLRDSKLLTPAA 69 Query: 68 REELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI- 125 RE L K+ A+ S + A ID I A A A+ L V P ++DG Sbjct: 70 REALAPKVRRWAVASAVGHAEPGEIDAVGIVAALRLAGRRALAQLPVPPDLVILDGNHDW 129 Query: 126 -------------------PEDLPCQAFAV---IKGDSISLSIAAASIIAKVTRDRLMRI 163 LPC A AV +K D ++A AS++AK TRD LM Sbjct: 130 LSDPREPSLLDALDGLGDPAAGLPCPAPAVTTRVKADVTCAAVAGASVLAKTTRDALMTA 189 Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 H+++P YG+ + GY H + + G HR ++R Sbjct: 190 RHEEFPHYGWAGNKGYSAPDHLEALAAHGACPQHRRSWR 228 >gi|238063313|ref|ZP_04608022.1| ribonuclease HII [Micromonospora sp. ATCC 39149] gi|237885124|gb|EEP73952.1| ribonuclease HII [Micromonospora sp. ATCC 39149] Length = 270 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 71/200 (35%), Positives = 109/200 (54%), Gaps = 4/200 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69 + LE ++ + VAG DE GRGA AGP+V AA +L G+ DSK ++ RE Sbjct: 16 YALERALQRRGFRHVAGADEAGRGACAGPLVAAAAVLPEGRRGEIDGLADSKLLTPASRE 75 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +Y+++ +SA+ ++ +D +H L A+ A+ +L P L DG + + Sbjct: 76 RVYDQVVASALAYAVVVIPADEVDARGLHVCNLAAMRRALASLTTRPDYVLTDGFGV-DG 134 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L AV KGD ++ +AAAS++AKVTRDR+M +P YGF H GY TA+H + Sbjct: 135 LDVPGLAVWKGDRVAACVAAASVLAKVTRDRIMVELDASFPGYGFAEHKGYITAEHTAAL 194 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 +E GP HR ++ + +S Sbjct: 195 REHGPCLEHRFSYVNVATVS 214 >gi|159036847|ref|YP_001536100.1| ribonuclease HII [Salinispora arenicola CNS-205] gi|189043653|sp|A8M684|RNH2_SALAI RecName: Full=Ribonuclease HII; Short=RNase HII gi|157915682|gb|ABV97109.1| Ribonuclease H [Salinispora arenicola CNS-205] Length = 269 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 70/200 (35%), Positives = 108/200 (54%), Gaps = 4/200 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69 + LE ++ + VAG DE GRGA AGP+V AA +L G+ DSK ++ RE Sbjct: 16 YALERALQRRGFRHVAGADEAGRGACAGPLVAAAAVLPEGRRGEIDGLADSKLLTPASRE 75 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +Y ++ + A+ ++ +D +H L A+ A+ +L P L DG + + Sbjct: 76 RVYAEVVARALAYAVVVIPAAEVDLRGLHVCNLAAMRRALASLATAPEYVLTDGFGV-DG 134 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L AV KGD ++ +AAAS++AKVTRDR+M +P YGF H GY TA+H + Sbjct: 135 LDVPGLAVWKGDRVAACVAAASVLAKVTRDRIMVELDTTFPGYGFAEHKGYITAEHSAAL 194 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 +E+GP HR ++ + +S Sbjct: 195 RERGPCPEHRFSYVNVATVS 214 >gi|123966915|ref|YP_001011996.1| ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9515] gi|166226637|sp|A2BYM8|RNH2_PROM5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|123201281|gb|ABM72889.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9515] Length = 209 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 77/198 (38%), Positives = 106/198 (53%), Gaps = 5/198 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREE 70 E ++ N GIDEVGRGA+ GPV AA++L N G+ DSKK++ KKR+ Sbjct: 11 EDHLQVLNKQLEIGIDEVGRGAVFGPVFSAAVVLTEKNGYTLKQLGVTDSKKLTEKKRKL 70 Query: 71 LYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L KI S S+ S+ +S + ID+ I AT ++ A++ L+ P +IDG Sbjct: 71 LLPKIISLSSDYSLGQSSAREIDQLGIRYATELSMIRAIKKLKSKPYEVIIDGPLSLRLW 130 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +I GDS SIAAASI+AKVTRD LM KK+ Y + GY T +H +K Sbjct: 131 KSHQRNIIAGDSKFTSIAAASIVAKVTRDFLMERLEKKFSGYFIFKNKGYGTKEHLLSLK 190 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + +HR +F NL Sbjct: 191 ANGVTNLHRKSFLTKLNL 208 >gi|316932574|ref|YP_004107556.1| ribonuclease H [Rhodopseudomonas palustris DX-1] gi|315600288|gb|ADU42823.1| Ribonuclease H [Rhodopseudomonas palustris DX-1] Length = 299 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 89/195 (45%), Positives = 124/195 (63%), Gaps = 1/195 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + ++ +WPVAG DE GRG LAGPVV AA++LDP IP G++DSK++S +KRE Sbjct: 77 PSFRRERALIKRGIWPVAGCDEAGRGPLAGPVVAAAVVLDPKRIPKGLDDSKRLSAEKRE 136 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+E+I ++A +++ AS + I++ NI +A+L A+ AV L +P+ +DGR Sbjct: 137 ALFEEICATAQVAVVYASPERINRDNILRASLWALTRAVHALPELPKQVFVDGRD-RLAT 195 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C AVI GD + SIAAASIIAKV+RDRLM ++ P YGF+ H GY H + Sbjct: 196 RCDCEAVIGGDGLIASIAAASIIAKVSRDRLMCRLAEQCPGYGFEQHKGYGVPDHLDALA 255 Query: 190 EKGPSCIHRLTFRPL 204 GP+ HR F P+ Sbjct: 256 RLGPTVHHRRAFAPV 270 >gi|187933770|ref|YP_001885450.1| ribonuclease HII [Clostridium botulinum B str. Eklund 17B] gi|187721923|gb|ACD23144.1| ribonuclease HII [Clostridium botulinum B str. Eklund 17B] Length = 271 Score = 200 bits (510), Expect = 8e-50, Method: Composition-based stats. Identities = 80/195 (41%), Positives = 113/195 (57%), Gaps = 8/195 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKK 67 +E + E +AG+DEVGRG LAGP+V A+ILD + +NDSKK++H K Sbjct: 75 YEFDKSFGE--FKYIAGVDEVGRGPLAGPIVACAVILDLNVIDEELILYLNDSKKLNHTK 132 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 REEL I A+ IS +S++ ID+ I + + + NL V P L DG + Sbjct: 133 REELSAIIKEKALAYYISLSSNKEIDERGIAFSNNNVFLDSCNNLSVRPDLVLSDGYLV- 191 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 +++ +IKGD+ S SIAAASI+AKV RD LM+ KYP Y F++++GY T KH Sbjct: 192 KNIEITNKFIIKGDTKSASIAAASILAKVYRDNLMKEYSIKYPHYDFENNMGYGTPKHID 251 Query: 187 VIKEKGPSCIHRLTF 201 +K+ G IHR +F Sbjct: 252 GLKKYGKCEIHRNSF 266 >gi|331698498|ref|YP_004334737.1| Ribonuclease H [Pseudonocardia dioxanivorans CB1190] gi|326953187|gb|AEA26884.1| Ribonuclease H [Pseudonocardia dioxanivorans CB1190] Length = 265 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 75/197 (38%), Positives = 111/197 (56%), Gaps = 4/197 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKR 68 ++ L++ + + PVAG+DE GRGA AGP+VVAA +L P + G+ DSK ++ R Sbjct: 35 NWTLQSTLHRHGLGPVAGVDEAGRGACAGPLVVAACVLRPGDAQRLAGLTDSKLLTAAAR 94 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 EE +E +T A+ +S+ + ID+ +H A ++ + AV L P L DG + Sbjct: 95 EEYFELLTRRAVDLSVVVIPPREIDRRGVHAANIEGMRRAVAGLAQRPGYVLTDGFPV-R 153 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 A AV KGD ++ +AAAS++AKVTRDR+M ++ P YGF H GY T H Sbjct: 154 GFGAPALAVPKGDLVAACVAAASVLAKVTRDRIMVELDERLPQYGFAVHKGYCTPVHDAA 213 Query: 188 IKEKGPSCIHRLTFRPL 204 + GPS HR +F + Sbjct: 214 LAAHGPSAEHRYSFVNV 230 >gi|228470569|ref|ZP_04055426.1| ribonuclease HII [Porphyromonas uenonis 60-3] gi|228307696|gb|EEK16672.1| ribonuclease HII [Porphyromonas uenonis 60-3] Length = 204 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 71/181 (39%), Positives = 102/181 (56%), Gaps = 2/181 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 G DE GRGALAG + AA+I + DSKK++ K+REEL I A ++ Sbjct: 15 CGCDEAGRGALAGDLYAAAVIWPDTLDHPHLRDSKKLTAKQREELRHFIEEHATAWAVGV 74 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-PEDLPCQAFAVIKGDSISL 144 A+ Q I + NI A++ A+ A+E L P LIDG P + ++KGD L Sbjct: 75 ATVQEIQQINILHASMLAMQRAIEALSCTPERLLIDGNYYDPRPDEVEYHTIVKGDDRYL 134 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AK RD M +YP YG++ + GYPTA+H++ I++ G +HR F+ L Sbjct: 135 AIAAASILAKTHRDEYMTQQALEYPHYGWEQNKGYPTAQHREGIRQHGSCPLHRQGFQLL 194 Query: 205 R 205 + Sbjct: 195 Q 195 >gi|160903112|ref|YP_001568693.1| ribonuclease H [Petrotoga mobilis SJ95] gi|160360756|gb|ABX32370.1| Ribonuclease H [Petrotoga mobilis SJ95] Length = 208 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 75/201 (37%), Positives = 106/201 (52%), Gaps = 10/201 (4%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKRE 69 +E + K + GIDE GRG LAGPV V A++++ + DSK +S K+RE Sbjct: 5 IEITLLNK-YKKIIGIDEAGRGPLAGPVFVGAVVIESKKEGELLAKIGKDSKSLSPKQRE 63 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIP 126 Y +IT + + ++ Q ID+ NI KAT A+ +E + +IDG+ Sbjct: 64 RRYFQITRNFKYYSNFSTSQLIDEINIFKATELAMIKLLEKIVEENANDYYVIIDGKFFK 123 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D ++KGD S I AASI+AK RD M H+ YP+YGF +H GYPT KH + Sbjct: 124 LDYNYD--CIVKGDQTSPLIGAASIVAKYERDIYMNQLHELYPNYGFITHKGYPTRKHIE 181 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 IK+ G HR TF P++ Sbjct: 182 SIKKYGIISEHRKTFNPIKRF 202 >gi|170760432|ref|YP_001787753.1| ribonuclease HII [Clostridium botulinum A3 str. Loch Maree] gi|189043583|sp|B1KWN1|RNH2_CLOBM RecName: Full=Ribonuclease HII; Short=RNase HII gi|169407421|gb|ACA55832.1| ribonuclease HII [Clostridium botulinum A3 str. Loch Maree] Length = 269 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 86/188 (45%), Positives = 120/188 (63%), Gaps = 6/188 (3%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEK 74 R N + +AG+DEVGRG LAGP+V AA++LD N F I DSKK+S KKREEL Sbjct: 78 RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREELDII 137 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI +I+ ++ ID+ I + + + AVE L+V P L DG ++ ++L + Sbjct: 138 IREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAV-KNLNIRN 196 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGDS S+SIA++SIIAKV RD +M+ K+ YGF+ + GY T +H Q IK+ GP Sbjct: 197 EFIIKGDSKSISIASSSIIAKVYRDNMMKEYSKELNMYGFNHNAGYGTEEHVQAIKKYGP 256 Query: 194 SCIHRLTF 201 S IHR++F Sbjct: 257 SKIHRMSF 264 >gi|258546183|ref|ZP_05706417.1| ribonuclease HII [Cardiobacterium hominis ATCC 15826] gi|258518608|gb|EEV87467.1| ribonuclease HII [Cardiobacterium hominis ATCC 15826] Length = 190 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 81/183 (44%), Positives = 109/183 (59%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 +AG+DE GRGAL G V+ AA+IL + + DSKK+S ++RE LY IT+ A+ ++ Sbjct: 2 IAGVDEAGRGALVGNVIAAAVILPASYELPDLTDSKKLSARQREALYAAITAQAVAWSAA 61 Query: 86 ASHQ-YIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A+ ID NIH ATL A+ A+ L P ALIDG+ P L A A++ GD+ Sbjct: 62 AATPAEIDTLNIHHATLLAMQRALAALNPPPSQALIDGKFTPT-LAIPARAIVGGDASEA 120 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASIIAKVTRDR M +YP YGF +H GY T H + G + HR ++ P+ Sbjct: 121 CIAAASIIAKVTRDREMLALEARYPGYGFATHKGYGTQAHLAALARLGATPEHRRSYAPV 180 Query: 205 RNL 207 R + Sbjct: 181 RAV 183 >gi|255603855|ref|XP_002538125.1| ribonuclease hii, putative [Ricinus communis] gi|223513694|gb|EEF24259.1| ribonuclease hii, putative [Ricinus communis] Length = 168 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 71/169 (42%), Positives = 95/169 (56%), Gaps = 6/169 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81 M + GIDE GRG LAG V AA+IL+P G+ DSKK+S KR+ L +I + A+ Sbjct: 1 MQRLCGIDEAGRGPLAGAVYAAAVILNPERPIAGLADSKKLSEAKRDALAIEIKAHALAW 60 Query: 82 SISSASHQYIDKHNIHKATLDAIYHA----VENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 I+S S Q ID+ NI +A+L A+ A VE + +DG P+ A++ Sbjct: 61 GIASVSAQEIDEINILQASLLAMQRAYQAMVEQFGLHATLIQVDGNRCPK-FELPCEAIV 119 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 KGDS I+AASI+AK RD + + +YP YGF H GYPTA H Sbjct: 120 KGDSKVAEISAASILAKTARDASLLVLDAEYPQYGFAQHKGYPTALHLA 168 >gi|145593863|ref|YP_001158160.1| ribonuclease HII [Salinispora tropica CNB-440] gi|189043656|sp|A4X4I2|RNH2_SALTO RecName: Full=Ribonuclease HII; Short=RNase HII gi|145303200|gb|ABP53782.1| RNase HII [Salinispora tropica CNB-440] Length = 270 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 72/200 (36%), Positives = 109/200 (54%), Gaps = 4/200 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69 + LE ++ + VAG DE GRGA AGP+V AA IL P G+ DSK ++ RE Sbjct: 16 YALERALQRRGFRQVAGADEAGRGACAGPLVAAAAILPPGRRGEVDGLADSKLLTPASRE 75 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +Y ++ + A ++ +D +H L A+ A+ +L P L DG + + Sbjct: 76 RVYAEVIARASAYAVVVIPAAEVDLRGLHVCNLAAMRRALASLATPPEYVLTDGFGV-DG 134 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L AV KGD ++ +AAAS++AKVTRDR+M ++P YGF H GY TA+H + Sbjct: 135 LDVPGLAVWKGDRVAACVAAASVLAKVTRDRIMVELDLEFPGYGFAEHKGYITAEHSAAL 194 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 +E+GP HR ++ + +S Sbjct: 195 RERGPCPEHRFSYVNVATVS 214 >gi|163846616|ref|YP_001634660.1| ribonuclease HII [Chloroflexus aurantiacus J-10-fl] gi|222524413|ref|YP_002568884.1| ribonuclease HII [Chloroflexus sp. Y-400-fl] gi|189043577|sp|A9WIH1|RNH2_CHLAA RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807970|sp|B9LAL2|RNH2_CHLSY RecName: Full=Ribonuclease HII; Short=RNase HII gi|163667905|gb|ABY34271.1| Ribonuclease H [Chloroflexus aurantiacus J-10-fl] gi|222448292|gb|ACM52558.1| Ribonuclease H [Chloroflexus sp. Y-400-fl] Length = 212 Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 75/212 (35%), Positives = 109/212 (51%), Gaps = 29/212 (13%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAG----------------PVVVAAIILDPNNI 53 P +E ++ + +AGIDE GRG AG P ++ Sbjct: 3 PDLSIEHDLQRRGYANLAGIDEAGRGCWAGPVVAAAVVLSPAVYRQP-----------DL 51 Query: 54 PFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ 112 G+NDSK+++ RE +Y I + A+ + + ID + I AT A+ A+ L Sbjct: 52 LAGVNDSKQLTAGARERIYTSIQTHALGVGVGIVPAFLIDAYGILPATRLAMIQALLALP 111 Query: 113 VIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 + +ID +P + A+++GD SLSIAAASIIAKVTRDRLM A +P YG Sbjct: 112 CAVDALIIDAVQLP-GISLPQTALVRGDERSLSIAAASIIAKVTRDRLMATADHCFPHYG 170 Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 F H GY TA H++ + + GPS +HR TF+P+ Sbjct: 171 FALHKGYGTAVHRRALAQYGPSPLHRRTFQPV 202 >gi|148652730|ref|YP_001279823.1| ribonuclease H [Psychrobacter sp. PRwf-1] gi|189043644|sp|A5WDY2|RNH2_PSYWF RecName: Full=Ribonuclease HII; Short=RNase HII gi|148571814|gb|ABQ93873.1| Ribonuclease H [Psychrobacter sp. PRwf-1] Length = 302 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 74/253 (29%), Positives = 108/253 (42%), Gaps = 55/253 (21%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP------------NNIPFG 56 + F + + G+DEVGRG L G VVVAA IL + Sbjct: 38 KALFSPDNQSQSGGFEFEIGVDEVGRGPLYGSVVVAAAILPKAWSGETEVGLLQDTPLAI 97 Query: 57 INDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP 115 + DSKK++ +KRE+L+E + A+ + ID+ NI +AT+ + A E L V Sbjct: 98 LTDSKKLTERKREKLFEPVKQHALAYLVVEVPAGVIDEINILQATILGMRVACEQLMVEI 157 Query: 116 RSA-------------------LIDGRSIPEDLPCQ-----------------------A 133 LIDG +P+ + A Sbjct: 158 TKVWRDASELPTAPSTPLGFKLLIDGNKVPDLDEARLATHGICLADMTVTQPAGMVKFCA 217 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 A +KGD+ +IAAAS++AKV RDR + +YP YG + H GYPT H + I G Sbjct: 218 EAWVKGDARHNAIAAASVLAKVYRDRQLIADGARYPGYGLEGHKGYPTKAHVEAIARLGV 277 Query: 194 SCIHRLTFRPLRN 206 HR +F+P++ Sbjct: 278 LPEHRRSFKPVQQ 290 >gi|116750425|ref|YP_847112.1| ribonuclease HII [Syntrophobacter fumaroxidans MPOB] gi|116750467|ref|YP_847154.1| ribonuclease HII [Syntrophobacter fumaroxidans MPOB] gi|189043668|sp|A0LMM5|RNH2_SYNFM RecName: Full=Ribonuclease HII; Short=RNase HII gi|116699489|gb|ABK18677.1| Ribonuclease H [Syntrophobacter fumaroxidans MPOB] gi|116699531|gb|ABK18719.1| RNase HII [Syntrophobacter fumaroxidans MPOB] Length = 233 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 80/206 (38%), Positives = 100/206 (48%), Gaps = 24/206 (11%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-----------PFGINDS 60 E + VAGIDEVGRG L + G+ DS Sbjct: 14 LHFEKQAYRQGFQLVAGIDEVGRGPL-----------AGPVVAAAVVVPAGVRLPGVADS 62 Query: 61 KKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK+S +RE E I S + I ID+ NI +AT A+ AV L+ P L Sbjct: 63 KKLSAGQRESCCEDILSCGCDVGIGRVEPSEIDRVNILQATFQAMIAAVAGLKTPPHCLL 122 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 IDG L + +GD+ SLSIAAASI+AKV RDRLM H KYP YGFD + GY Sbjct: 123 IDG-PYELPLFIAQKGIPQGDAKSLSIAAASIVAKVHRDRLMCEYHLKYPVYGFDRNKGY 181 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLR 205 TA+H ++ GP IHRL+F +R Sbjct: 182 GTARHLDALRRYGPCPIHRLSFGGVR 207 >gi|296273902|ref|YP_003656533.1| ribonuclease H [Arcobacter nitrofigilis DSM 7299] gi|296098076|gb|ADG94026.1| Ribonuclease H [Arcobacter nitrofigilis DSM 7299] Length = 178 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 68/178 (38%), Positives = 103/178 (57%), Gaps = 6/178 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + GIDE GRG LAGP+ VA ++L N G+NDSKK+S K+RE+L+++I ++ I Sbjct: 2 LCGIDEAGRGPLAGPLCVAGVVLK--NPIEGLNDSKKLSEKRREKLFDEIILNSYYHIVF 59 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + +D+ + ++I ++N V L+DG + + IK D+ Sbjct: 60 TSAKTLDELGLSLCLKNSIEEIMQN--VKANEYLMDGNTSFGIEGLKHE--IKADANYEE 115 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 ++AASI+AKV+RDR M +KYP+Y F+ H GY T H +IKE G S HR +F+ Sbjct: 116 VSAASILAKVSRDRYMVEISQKYPNYLFEKHKGYGTKAHIDLIKEFGRSEEHRYSFKT 173 >gi|154245214|ref|YP_001416172.1| ribonuclease HII [Xanthobacter autotrophicus Py2] gi|238686707|sp|A7IES2|RNH2_XANP2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|154159299|gb|ABS66515.1| Ribonuclease H [Xanthobacter autotrophicus Py2] Length = 249 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 90/196 (45%), Positives = 123/196 (62%), Gaps = 1/196 (0%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E + PVAG DEVGRG LAGPVV AA++LDP +P G++DSKK++ KRE Sbjct: 39 DFTRERALYADGRAPVAGADEVGRGPLAGPVVAAAVVLDPARVPQGLDDSKKLTRAKRES 98 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 LY +I ++A ++I+ A + ID+ NI +ATL A+ +AV L P L+DG P + Sbjct: 99 LYLEICATAEVAIALAPPERIDRDNIRQATLWALANAVRGLPCRPAFLLVDGND-PPRVD 157 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 C+ A++ GD + SIAAASI+AKV RDRLM +P YGF+ H+GY T +H +K Sbjct: 158 CEVEAIVGGDGLVASIAAASIVAKVVRDRLMAGVGAAFPAYGFERHMGYGTREHGAALKA 217 Query: 191 KGPSCIHRLTFRPLRN 206 GP HR +F P+R Sbjct: 218 HGPCLHHRRSFAPVRE 233 >gi|33862058|ref|NP_893619.1| ribonuclease HII and HIII [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|39932293|sp|Q7UZZ2|RNH2_PROMP RecName: Full=Ribonuclease HII; Short=RNase HII gi|33634276|emb|CAE19961.1| Ribonuclease HII and HIII [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 209 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 70/180 (38%), Positives = 101/180 (56%), Gaps = 5/180 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS-SAII 81 GIDEVGRG++ GPV A++L + G+NDSKK++ KKR++ + KI + S+ Sbjct: 23 IGIDEVGRGSVFGPVFSVAVVLSKKSGLTLKKLGVNDSKKLTPKKRKDFFPKIIALSSDY 82 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 ++ +S + ID I AT ++ AV+ L+ +P LIDG +I GDS Sbjct: 83 ALGQSSVREIDLLGIRHATELSMIRAVKKLKHMPSELLIDGPLTLRLWEGNQRNIISGDS 142 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +SIA ASIIAKV RD LM KYP Y + GY T +H +K+ G + +HR +F Sbjct: 143 KFISIATASIIAKVMRDSLMERLESKYPGYFIFKNKGYGTKQHFSSLKKHGLTNLHRKSF 202 >gi|145352696|ref|XP_001420674.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580909|gb|ABO98967.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 189 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 75/189 (39%), Positives = 114/189 (60%), Gaps = 3/189 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E E V G+DE GRG LAGPVV AA + + + +NDSK+++ + REE++E+ Sbjct: 2 EKKHWEAGRHRVVGVDEAGRGPLAGPVVAAACFVPKDCVVDCVNDSKQLTEEGREEIFEE 61 Query: 75 ITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 + ++ I + ID+ NI + T++A++ + ++ + LIDG +P+ L + Sbjct: 62 LMANKDIEYGVCVIDQDRIDEINILECTMEAMHRSAADVPNV-DWVLIDGNRVPKPLEGK 120 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A A++KGD+ +++IAAASIIAKVTRDR+M K++P YGF H GY T H I + G Sbjct: 121 AEAIVKGDAKNVAIAAASIIAKVTRDRMMLEIDKEFPMYGFKDHKGYGTKAHMAAIDKHG 180 Query: 193 PSCIHRLTF 201 P HR TF Sbjct: 181 PCVYHRKTF 189 >gi|317014714|gb|ADU82150.1| ribonuclease HII [Helicobacter pylori Gambia94/24] Length = 201 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 66/191 (34%), Positives = 97/191 (50%), Gaps = 11/191 (5%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG LAG + VA ++ + + G+ DSKK+S KKR L +KI + + Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCNEKTALEFLKMGLKDSKKLSPKKRFFLEDKIKTHDEVGF 63 Query: 83 -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138 + S IDK + AI VEN + IDG + + + P +IK Sbjct: 64 FVVKKSANEIDKLGLGACLKLAIQEIVENGCSLADEIKIDGNTAFGLNKRYPHIQ-TIIK 122 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD IA AS++AK +DR M H + +YG+D + GY T +H + I + G + HR Sbjct: 123 GDEKVAQIAMASVLAKAAKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHR 182 Query: 199 LTFRPLRNLSV 209 +F L+N S+ Sbjct: 183 HSF-TLKNRSL 192 >gi|255025707|ref|ZP_05297693.1| ribonuclease HII [Listeria monocytogenes FSL J2-003] gi|255028970|ref|ZP_05300921.1| ribonuclease HII [Listeria monocytogenes LO28] Length = 233 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 80/171 (46%), Positives = 108/171 (63%), Gaps = 3/171 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ L+ Sbjct: 60 QYETDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 EKI AI I + H ID+ NI++AT A+ A+ L P LID P Sbjct: 120 EKIKKEAIAIGVGIIEHDVIDQVNIYEATKLAMCEALNQLTPEPDFVLIDAM--PLRYTE 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 ++IKGD+ S+SIAAASIIAKVTRDRLM++ +KYP Y F +++GY T Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGTK 228 >gi|218245925|ref|YP_002371296.1| Ribonuclease H [Cyanothece sp. PCC 8801] gi|257058973|ref|YP_003136861.1| ribonuclease H [Cyanothece sp. PCC 8802] gi|218166403|gb|ACK65140.1| Ribonuclease H [Cyanothece sp. PCC 8801] gi|256589139|gb|ACV00026.1| Ribonuclease H [Cyanothece sp. PCC 8802] Length = 205 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 76/193 (39%), Positives = 102/193 (52%), Gaps = 23/193 (11%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI-------------PFGINDSKKISHKKREEL 71 +AG+DEVGRG L G G+ DSK++S KKR +L Sbjct: 13 LIAGVDEVGRGTLFG---------PVVAAVVVIPVSSTTYLQEIGVKDSKQLSAKKRLKL 63 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++I A IS AS + ID+ NI +A+L A+ AV +L V P L+DGR DL Sbjct: 64 AQEIKIVAKGYHISYASVKEIDRLNILQASLLAMKRAVLHLSVEPAICLVDGRQKIPDLT 123 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD +S IAAASI+AKV RD L+ KYP Y ++ GY T KH+ +++ Sbjct: 124 IPQQTIIGGDRLSPIIAAASILAKVWRDELIIRLDAKYPQYDLANNKGYGTLKHRLALEK 183 Query: 191 KGPSCIHRLTFRP 203 G S HRL+FRP Sbjct: 184 YGVSPQHRLSFRP 196 >gi|87125028|ref|ZP_01080875.1| Ribonuclease HII and HIII [Synechococcus sp. RS9917] gi|86167348|gb|EAQ68608.1| Ribonuclease HII and HIII [Synechococcus sp. RS9917] Length = 205 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 69/184 (37%), Positives = 102/184 (55%), Gaps = 7/184 (3%) Query: 29 IDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +DEVGRG GPV+ AA++L + G+ DSK++S ++R +L I + A ++ Sbjct: 1 MDEVGRGCWFGPVLAAAVVLSEPAASRLLAQGLTDSKRLSQRRRAQLVPLIEAEACAWAL 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 AS Q ID I AT A+ A++ L P L+DG +++GDS Sbjct: 61 GQASAQDIDSGGIRAATELAMLRALQRLPRCPDQVLVDGVLPLRLWLGPQETIVRGDSHC 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SIAAAS++AK RD L++ +P+YG + H GY TA+H+Q + GP+ +HR TF Sbjct: 121 ASIAAASVLAKQARDGLIQRLACHFPEYGLERHAGYGTARHRQALLRHGPTPLHRRTF-- 178 Query: 204 LRNL 207 LR L Sbjct: 179 LRKL 182 >gi|168184647|ref|ZP_02619311.1| ribonuclease HII [Clostridium botulinum Bf] gi|237795877|ref|YP_002863429.1| ribonuclease HII [Clostridium botulinum Ba4 str. 657] gi|182672292|gb|EDT84253.1| ribonuclease HII [Clostridium botulinum Bf] gi|229260950|gb|ACQ51983.1| ribonuclease HII [Clostridium botulinum Ba4 str. 657] Length = 269 Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 86/188 (45%), Positives = 119/188 (63%), Gaps = 6/188 (3%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEK 74 R N + +AG+DEVGRG LAGP+V AA++LD N F I DSKK+S KKREEL Sbjct: 78 RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREELDII 137 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI +I+ ++ ID+ I + + + AVE L+V P L DG ++ ++L + Sbjct: 138 IREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAV-KNLNIRN 196 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGDS S+SIA++SIIAKV RD +M+ K YGF+ + GY T +H Q IK+ GP Sbjct: 197 EFIIKGDSKSISIASSSIIAKVYRDNMMKEYSKGLNMYGFNHNAGYGTEEHVQAIKKYGP 256 Query: 194 SCIHRLTF 201 S IHR++F Sbjct: 257 SKIHRMSF 264 >gi|226949794|ref|YP_002804885.1| ribonuclease HII [Clostridium botulinum A2 str. Kyoto] gi|226842944|gb|ACO85610.1| ribonuclease HII [Clostridium botulinum A2 str. Kyoto] gi|322806706|emb|CBZ04275.1| ribonuclease HII [Clostridium botulinum H04402 065] Length = 269 Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 86/188 (45%), Positives = 119/188 (63%), Gaps = 6/188 (3%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEK 74 R N + +AG+DEVGRG LAGP+V AA++LD N F I DSKK+S KKREEL Sbjct: 78 RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREELDII 137 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI +I+ ++ ID+ I + + + AVE L+V P L DG ++ ++L + Sbjct: 138 IREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAV-KNLNIRN 196 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGDS S+SIA++SIIAKV RD +M+ K YGF+ + GY T +H Q IK+ GP Sbjct: 197 EFIIKGDSKSISIASSSIIAKVYRDNMMKEYSKGLNMYGFNHNAGYGTEEHVQAIKKHGP 256 Query: 194 SCIHRLTF 201 S IHR++F Sbjct: 257 SKIHRMSF 264 >gi|308234480|ref|ZP_07665217.1| Ribonuclease H [Atopobium vaginae DSM 15829] gi|328944073|ref|ZP_08241538.1| ribonuclease HII [Atopobium vaginae DSM 15829] gi|327492042|gb|EGF23816.1| ribonuclease HII [Atopobium vaginae DSM 15829] Length = 270 Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 74/181 (40%), Positives = 101/181 (55%), Gaps = 3/181 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-I 80 + + G+DEVGRG LAGP+ VAA+IL +G+NDSKK++ +RE L +I + A Sbjct: 85 GVGTIMGVDEVGRGPLAGPLAVAAVILPQEPHIWGLNDSKKLTSLERERLDTQIRAHARA 144 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 + I+ S + ID+ I + + A+ V P LIDG P + +IKGD Sbjct: 145 VGIAFTSPEDIDRFGIVSCLRETMKCAILQTGVEPDCVLIDGN--PIHAHPKEKTLIKGD 202 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S SIAAASI+AKV RDRLM+ YP Y F + GY + H IK G S +HR + Sbjct: 203 SRIASIAAASIVAKVARDRLMQDLDVCYPQYHFAENKGYGSKAHIDAIKTYGLSPVHRKS 262 Query: 201 F 201 F Sbjct: 263 F 263 >gi|325963707|ref|YP_004241613.1| ribonuclease HII [Arthrobacter phenanthrenivorans Sphe3] gi|323469794|gb|ADX73479.1| ribonuclease HII [Arthrobacter phenanthrenivorans Sphe3] Length = 248 Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 74/217 (34%), Positives = 112/217 (51%), Gaps = 22/217 (10%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVA-AII-LDPNNIPFGINDSKKISH 65 + P E + + + +AG+DEVGRGALAGPV V A++ L+ G+ DSK ++ Sbjct: 6 KAPTLRHERTFKAQGIRYLAGVDEVGRGALAGPVSVGIAVVDLEHQKPLAGVRDSKLLTP 65 Query: 66 KKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALID 121 +RE L + ++ S + AS Q ID I A A A +++ + P + L+D Sbjct: 66 SERERLEPLVRRWSVASAVGHASAQEIDSIGIIAALRLAGTRAWQDILAAGIRPEAVLLD 125 Query: 122 GRSI---PEDLP-------------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165 G P P +K D LS+AAAS+IAKV RDR MR H Sbjct: 126 GSHNWLSPAGQPSLFDEPVFEASCDAPVHTKVKADMQCLSVAAASVIAKVERDRTMRELH 185 Query: 166 KKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 ++PD+G+D + GY T H+ V++ GP+ HR+++R Sbjct: 186 AEFPDFGWDINKGYATVLHRDVLRAAGPTPYHRVSWR 222 >gi|269215611|ref|ZP_06159465.1| ribonuclease HII [Slackia exigua ATCC 700122] gi|269131098|gb|EEZ62173.1| ribonuclease HII [Slackia exigua ATCC 700122] Length = 259 Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 69/197 (35%), Positives = 104/197 (52%), Gaps = 8/197 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 R ++ + + + G+DEVGRG LAGP+ V A++L GI+DSKK++ R Sbjct: 56 RSLYDFQRELAHGGVA--VGLDEVGRGPLAGPLAVGAVVLPDEPRIEGIDDSKKLAPSAR 113 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRS 124 EEL I ++A+ + ID+ I A AV + V + L+DG Sbjct: 114 EELSAVIRATAVAWDVEFIGPHDIDELGISACLKAAFSRAVAAIECAGVRIDAILLDGN- 172 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 P + + V+KGD+ +I+ ASIIAKV RD MR YP YGF+ + GY +A+H Sbjct: 173 -PLHIDDREVNVVKGDARCAAISCASIIAKVERDAYMRSQAVAYPAYGFEENKGYGSAQH 231 Query: 185 QQVIKEKGPSCIHRLTF 201 + IK+ G + +HR +F Sbjct: 232 IEAIKKHGLTPLHRASF 248 >gi|154174298|ref|YP_001409163.1| ribonuclease HII [Campylobacter curvus 525.92] gi|189043573|sp|A7H121|RNH2_CAMC5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|112802182|gb|EAT99526.1| ribonuclease HII [Campylobacter curvus 525.92] Length = 183 Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 66/176 (37%), Positives = 99/176 (56%), Gaps = 7/176 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 V GIDE GRGALAGP+ VAA +L+ G+NDSKK++ K+R+EL+ IT ++ I Sbjct: 3 VCGIDEAGRGALAGPMAVAACVLNAG--ISGLNDSKKLTPKRRKELFHLITQNSRYLIVY 60 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S++ ID+ + + A+ + L L DG ++ ++K D+ Sbjct: 61 FSNEQIDELGLSECLRRALN--LFKLYFAGCELLYDGN---QNYGTGVQTMVKADAKVEE 115 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + AASI+AKV+RD LM K YP++G+ SH GY T H + I + G + I R +F Sbjct: 116 VGAASILAKVSRDELMCAWDKIYPNFGYKSHKGYGTKAHLEAITKYGQNEISRKSF 171 >gi|308276686|gb|ADO26585.1| ribonuclease HII [Corynebacterium pseudotuberculosis I19] Length = 204 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 69/174 (39%), Positives = 94/174 (54%), Gaps = 4/174 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREEL 71 E + + + PVAGIDE GRG+ GP+ +AA IL I + DSKK+S + REEL Sbjct: 31 FEGTLEKWGLGPVAGIDEAGRGSCCGPITIAACILPSRPIAALATLTDSKKLSSRMREEL 90 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y I A+ SI S ID++ I A + + A+ L P LID +P L Sbjct: 91 YPLIKKYAVAWSILHISASEIDRYGIQHANISGMRRAIALLSKQPGYVLIDAMRVP-GLT 149 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 C + +I GD+ + IAAAS++AK +RD LM ++YP YG H GY T H Sbjct: 150 CPSLPIIGGDTAARCIAAASVLAKQSRDELMIDLDREYPGYGLGDHKGYGTKSH 203 >gi|153940580|ref|YP_001391739.1| ribonuclease HII [Clostridium botulinum F str. Langeland] gi|170755844|ref|YP_001781984.1| ribonuclease HII [Clostridium botulinum B1 str. Okra] gi|189043581|sp|B1II72|RNH2_CLOBK RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043582|sp|A7GG29|RNH2_CLOBL RecName: Full=Ribonuclease HII; Short=RNase HII gi|152936476|gb|ABS41974.1| ribonuclease HII [Clostridium botulinum F str. Langeland] gi|169121056|gb|ACA44892.1| ribonuclease HII [Clostridium botulinum B1 str. Okra] gi|295319764|gb|ADG00142.1| ribonuclease HII [Clostridium botulinum F str. 230613] Length = 269 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 86/188 (45%), Positives = 119/188 (63%), Gaps = 6/188 (3%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEK 74 R N + +AG+DEVGRG LAGP+V AA++LD N F I DSKK+S KKREEL Sbjct: 78 RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREELDII 137 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI +I+ ++ ID+ I + + + AVE L+V P L DG ++ ++L + Sbjct: 138 IREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAV-KNLNIRN 196 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGDS S+SIA++SIIAKV RD +M+ K YGF+ + GY T +H Q IK+ GP Sbjct: 197 EFIIKGDSKSISIASSSIIAKVYRDNMMKEYSKGLNMYGFNHNAGYGTEEHVQAIKKYGP 256 Query: 194 SCIHRLTF 201 S IHR++F Sbjct: 257 SKIHRMSF 264 >gi|219118288|ref|XP_002179922.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217408975|gb|EEC48908.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 189 Score = 197 bits (503), Expect = 5e-49, Method: Composition-based stats. Identities = 84/191 (43%), Positives = 112/191 (58%), Gaps = 11/191 (5%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS-HKKREELYEKITS--SAI 80 V G+DE GRG LAGPVV AA ++ + GI DSK ++ REELYEKI S + Sbjct: 1 QYVIGVDEAGRGPLAGPVVAAAAVVPID--IVGIADSKTLTRESVREELYEKIVSSDNVR 58 Query: 81 ISISSASHQYIDKHNIHKATLDAIY---HAVENLQVIPR---SALIDGRSIPEDLPCQAF 134 +++ ID+ NI +ATL + AV + +P AL+DG +P+ + + Sbjct: 59 WAVAVIDSARIDEVNILQATLQGMRLAASAVAGISEVPDNAFYALLDGNRLPKKMAMRVE 118 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 ++KGDS SIAAASI+AKVTRDRLM K YP+Y H GYPTA H +++ G S Sbjct: 119 TMVKGDSREYSIAAASILAKVTRDRLMHGYDKLYPEYNLAQHKGYPTAAHMDAVRKYGAS 178 Query: 195 CIHRLTFRPLR 205 IHR TF PL+ Sbjct: 179 PIHRRTFAPLK 189 >gi|219848742|ref|YP_002463175.1| ribonuclease HII [Chloroflexus aggregans DSM 9485] gi|254807969|sp|B8GBB1|RNH2_CHLAD RecName: Full=Ribonuclease HII; Short=RNase HII gi|219543001|gb|ACL24739.1| Ribonuclease H [Chloroflexus aggregans DSM 9485] Length = 212 Score = 197 bits (503), Expect = 5e-49, Method: Composition-based stats. Identities = 72/217 (33%), Positives = 107/217 (49%), Gaps = 33/217 (15%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALA------------------GPVVVAAIILDPN 51 P +E + + +AGIDE GRG A G Sbjct: 3 PDLSIEQTLLARGYRVLAGIDEAGRGCWAGPVVAAAVVLAPIVYERPG------------ 50 Query: 52 NIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVEN 110 + ++DSK+++ RE Y + A I + + +D + I AT A+ A+ + Sbjct: 51 -LLDAVDDSKQLTAVARERAYTLVQRYARGIGVGTVPAFLVDAYGILPATRLAMTLALLS 109 Query: 111 LQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 L + LID +P + ++++GD+ SLSIAAASIIAKVTRDRLM+ A + YP Sbjct: 110 LPCSVDALLIDAERLP-GIRVPQESLVRGDARSLSIAAASIIAKVTRDRLMQTADRCYPQ 168 Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 YGF H GY T H++ +++ GPS HR TF+P+ L Sbjct: 169 YGFALHKGYGTPVHRRALRQYGPSPFHRRTFQPVLEL 205 >gi|262202029|ref|YP_003273237.1| ribonuclease H [Gordonia bronchialis DSM 43247] gi|262085376|gb|ACY21344.1| Ribonuclease H [Gordonia bronchialis DSM 43247] Length = 228 Score = 197 bits (503), Expect = 5e-49, Method: Composition-based stats. Identities = 80/194 (41%), Positives = 107/194 (55%), Gaps = 4/194 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREEL 71 E + + PVAG+DE GRGA AGP+VVAA +L P + ++DSK+++ + RE L Sbjct: 19 FEFALHRNGLGPVAGVDEAGRGACAGPLVVAACVLKPTQLTSLADLDDSKRLTERTRETL 78 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y +T A S ID+ IH A ++ + AV L V P L DG +P L Sbjct: 79 YRAVTRYAHSWSAVIIDAAEIDRIGIHVANIEGMRRAVAALDVTPGYVLSDGFKVP-GLT 137 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD + IAAASIIAKVTRDR+M ++P Y F H GY TA H I Sbjct: 138 APSLPVIGGDGAAACIAAASIIAKVTRDRIMVAMDDEHPGYDFAVHKGYSTAHHMSRIDT 197 Query: 191 KGPSCIHRLTFRPL 204 GPS HR+++R + Sbjct: 198 AGPSPQHRMSYRNV 211 >gi|148380399|ref|YP_001254940.1| ribonuclease HII [Clostridium botulinum A str. ATCC 3502] gi|168180678|ref|ZP_02615342.1| ribonuclease HII [Clostridium botulinum NCTC 2916] gi|189043580|sp|A5I4L9|RNH2_CLOBH RecName: Full=Ribonuclease HII; Short=RNase HII gi|148289883|emb|CAL83991.1| putative ribonuclease HII [Clostridium botulinum A str. ATCC 3502] gi|182668376|gb|EDT80355.1| ribonuclease HII [Clostridium botulinum NCTC 2916] Length = 269 Score = 197 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 86/188 (45%), Positives = 119/188 (63%), Gaps = 6/188 (3%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEK 74 R N + +AG+DEVGRG LAGP+V AA++LD N F I DSKK+S KKREEL Sbjct: 78 RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREELDII 137 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI +I+ ++ ID+ I + + + AVE L+V P L DG ++ ++L + Sbjct: 138 IREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAV-KNLNIRN 196 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGDS S+SIA++SIIAKV RD +M+ K YGF+ + GY T +H Q IK+ GP Sbjct: 197 EFIIKGDSKSISIASSSIIAKVYRDSMMKEYSKGLNMYGFNHNAGYGTEEHVQAIKKHGP 256 Query: 194 SCIHRLTF 201 S IHR++F Sbjct: 257 SKIHRMSF 264 >gi|269792962|ref|YP_003317866.1| Ribonuclease H [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100597|gb|ACZ19584.1| Ribonuclease H [Thermanaerovibrio acidaminovorans DSM 6589] Length = 188 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 81/184 (44%), Positives = 111/184 (60%), Gaps = 5/184 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS-S 78 VAG+DE GRG LAGPVV AA +L + + G+ DSK +S ++RE L+E I S + Sbjct: 1 MTVAGVDEAGRGPLAGPVVAAAAVLTRDQARELMALGLKDSKALSPRRREALFEAIRSLN 60 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 +AS ID+ ++ KA+L A+ AV L V P+ L+DG E L V+K Sbjct: 61 VQWRAQAASWGRIDRTHVLKASLWAMGMAVMALPVRPQLVLVDGSVPIEGLRIPQRCVVK 120 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GDS SI AAS+IAKV RDR+M + YP Y F SH GYPT +H++++ + GPS +HR Sbjct: 121 GDSKVPSIMAASVIAKVLRDRVMLALDRLYPQYRFASHKGYPTEEHRRILSQLGPSPVHR 180 Query: 199 LTFR 202 +F Sbjct: 181 RSFS 184 >gi|157414103|ref|YP_001484969.1| ribonuclease HII [Prochlorococcus marinus str. MIT 9215] gi|166991069|sp|A8G702|RNH2_PROM2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|157388678|gb|ABV51383.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9215] Length = 205 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 71/201 (35%), Positives = 109/201 (54%), Gaps = 8/201 (3%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSK 61 + E+ +L+ + + + GIDEVGRGA+ GPV A ++L N G+ DSK Sbjct: 1 MQEKKEEDLQQALNKVSE---VGIDEVGRGAIFGPVFSAVVVLTEKNKFLLKQLGVKDSK 57 Query: 62 KISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K++ KKR+ L KI S+ I +S + ID I AT ++ A++ L+ P ++ Sbjct: 58 KLTPKKRKFLVPKILLLSSDYGIGQSSVREIDNLGIRVATELSMIRALKKLKEKPSELIV 117 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG + ++ GDS +SIA+ASI+AKV+RD LM KKY Y + GY Sbjct: 118 DGPLLLRPWRGTQKNIVSGDSKFISIASASIVAKVSRDNLMMKLEKKYSGYLIFKNKGYG 177 Query: 181 TAKHQQVIKEKGPSCIHRLTF 201 T +H +IK+ G + +HR +F Sbjct: 178 TREHLSLIKKNGVTNLHRKSF 198 >gi|78776481|ref|YP_392796.1| ribonuclease HII [Sulfurimonas denitrificans DSM 1251] gi|78497021|gb|ABB43561.1| RNase HII [Sulfurimonas denitrificans DSM 1251] Length = 188 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 72/183 (39%), Positives = 101/183 (55%), Gaps = 7/183 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + GIDE GRG +AG +VVA IL N+ G+NDSKK++ KKRE LYE I ++ I Sbjct: 5 LCGIDEAGRGPIAGDLVVAGCIL--NSHVDGLNDSKKLNEKKREALYEIIIKNSSYHIVK 62 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID + I A+ ++NL + +LP +IK D Sbjct: 63 FSAKEIDDNGISICMKKALLEIMKNLTCKEYLFDGNTNFGINNLP----TMIKADGKIPE 118 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 ++AASI+AKVT DR + KKYP Y F H GY TA H ++IK+ G IHR +++ L+ Sbjct: 119 VSAASILAKVTHDRNIINDAKKYPQYQFQKHKGYGTALHVEMIKKYGYCEIHRKSYK-LK 177 Query: 206 NLS 208 L+ Sbjct: 178 ALN 180 >gi|28210941|ref|NP_781885.1| ribonuclease HII [Clostridium tetani E88] gi|39932379|sp|Q895L8|RNH2_CLOTE RecName: Full=Ribonuclease HII; Short=RNase HII gi|28203380|gb|AAO35822.1| ribonuclease HII [Clostridium tetani E88] Length = 271 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 78/199 (39%), Positives = 112/199 (56%), Gaps = 9/199 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-----FGINDSKKI 63 + ++ + N +AG+DEVGRG LAGP+V AA+ILD N +G+ DSKK+ Sbjct: 71 KKMYDFDKKFA--NNVLIAGVDEVGRGPLAGPIVAAAVILDLNYKNHNDLFYGLKDSKKL 128 Query: 64 SHKKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 K+RE L I A+ I + ID I + + + L+V P + DG Sbjct: 129 RAKERENLSHIIKDKALYYNIFELDNHMIDTSGIAWCNNEVLKKSTLGLEVTPGIVISDG 188 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 SI +++ + +IKGD+ S SIAAASIIAKV RD+ M K YP YGF+ + GY T Sbjct: 189 FSI-KNINIKNEYIIKGDAKSASIAAASIIAKVYRDKKMEEYSKIYPHYGFEKNSGYGTD 247 Query: 183 KHQQVIKEKGPSCIHRLTF 201 +H + +K+ GP IHR++F Sbjct: 248 EHTKALKKYGPCPIHRMSF 266 >gi|26554469|ref|NP_758403.1| ribonuclease HII [Mycoplasma penetrans HF-2] gi|26454479|dbj|BAC44807.1| ribonuclease HII [Mycoplasma penetrans HF-2] Length = 218 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 78/213 (36%), Positives = 115/213 (53%), Gaps = 10/213 (4%) Query: 1 MFCN-----SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF 55 MF N +I + F+ + +REK + G+DEVGRG +AGP+VV +IL+PN Sbjct: 1 MFLNIVVRINIMKNKLFDFDNSLREK-YKNIIGLDEVGRGCIAGPLVVVGVILNPNFFDD 59 Query: 56 GINDSKKI-SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQV 113 I DSK I S + R+EL I ++I I + +D+ +A++ + L Sbjct: 60 RIKDSKLIKSIELRKELKNLILKNSISYQIEVVNSNIVDQLGPKQASVKGMTKIANGLIN 119 Query: 114 IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 L D I +DL ++KGD+ S +IA ASIIAK TRD M KYP+Y F Sbjct: 120 DYDLCLTDFEKI-KDLEKPQMNLVKGDNTSFTIACASIIAKSTRDDYMEELDNKYPNYLF 178 Query: 174 DSHVGYPTAKHQQVIKEKGP-SCIHRLTFRPLR 205 +H GY T KH Q+I + GP +HR +++P++ Sbjct: 179 KNHQGYLTKKHLQLIHQYGPIKEVHRFSYKPIK 211 >gi|251772986|gb|EES53543.1| Ribonuclease HII [Leptospirillum ferrodiazotrophum] Length = 195 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 67/181 (37%), Positives = 92/181 (50%), Gaps = 9/181 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 G+DEVGRG LAGPVV A + GI DSK +S +R+EL I + A +S Sbjct: 1 MGVDEVGRGPLAGPVVAACVFFSAPVSRLSRLGIADSKSLSSDRRDELSRLIHTEADHVS 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPCQAFAVI 137 + +S +++ N+ +AT A+ A++ L +DGR + Q V+ Sbjct: 61 LGWSSVDEVNELNVRQATFLAMNRALQQLPPFLMRDSRLCVAVDGRDKIPGVEIQQRTVV 120 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD LS+AAASI+AKV RD M +P YGF H GY T +H+ I G S H Sbjct: 121 GGDRTVLSVAAASIVAKVARDSYMEKLDALFPGYGFAKHKGYGTEEHRNAILRLGLSPHH 180 Query: 198 R 198 R Sbjct: 181 R 181 >gi|46203286|ref|ZP_00051740.2| COG0164: Ribonuclease HII [Magnetospirillum magnetotacticum MS-1] Length = 200 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 75/188 (39%), Positives = 106/188 (56%), Gaps = 5/188 (2%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYE 73 R V G DEVGRGAL+GPV+VAA+ DP P + +DSK++ R L Sbjct: 7 ARAATYPAVIGCDEVGRGALSGPVMVAAVWFDPLAFPPELLARLDDSKRLDKATRTALTP 66 Query: 74 KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I S A ++++++S + +D+ N+ ATLDA+ AV L + L+DGR L Sbjct: 67 LIRSHARVALAASSRRLVDRINVRAATLDAMRRAVTRLGLDAP-VLVDGRDTIPGLTQTC 125 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 AVI GD + IAAASIIAK RD +MR ++P YG++ + GY TA H + +G Sbjct: 126 RAVIGGDRLVPQIAAASIIAKTLRDDIMRRLAPRHPAYGWERNAGYGTAVHLAGLSAQGC 185 Query: 194 SCIHRLTF 201 S HR++F Sbjct: 186 SPHHRVSF 193 >gi|251780020|ref|ZP_04822940.1| ribonuclease HII [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084335|gb|EES50225.1| ribonuclease HII [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 271 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 81/195 (41%), Positives = 113/195 (57%), Gaps = 8/195 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKK 67 +E + E VAG+DEVGRG LAGP+V ++ILD + +NDSKK++H K Sbjct: 75 YEFDKSFGE--FKYVAGVDEVGRGPLAGPIVACSVILDLNVIDEELILYLNDSKKLNHIK 132 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 REEL I A+ SIS +S++ ID+ I + + NL + P L DG + Sbjct: 133 REELAIIIKEKALAYSISLSSNKEIDERGIAYCNNNVFLDSCNNLSIKPELVLSDGYLV- 191 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 +++ VIKGD+ S SIAAASI+AKV RD LM+ KYP Y F++++GY T KH Sbjct: 192 KNIDIANKFVIKGDTKSASIAAASILAKVYRDNLMKEYSIKYPHYDFENNMGYGTQKHID 251 Query: 187 VIKEKGPSCIHRLTF 201 +K+ G IHR +F Sbjct: 252 GLKKYGKCEIHRNSF 266 >gi|313886392|ref|ZP_07820115.1| ribonuclease HII [Porphyromonas asaccharolytica PR426713P-I] gi|332300172|ref|YP_004442093.1| Ribonuclease H [Porphyromonas asaccharolytica DSM 20707] gi|312924168|gb|EFR34954.1| ribonuclease HII [Porphyromonas asaccharolytica PR426713P-I] gi|332177235|gb|AEE12925.1| Ribonuclease H [Porphyromonas asaccharolytica DSM 20707] Length = 204 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 69/181 (38%), Positives = 103/181 (56%), Gaps = 2/181 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 G DE GRGALAG + AA++ + DSKK++ ++REEL I A ++ Sbjct: 15 CGCDEAGRGALAGDLYAAAVVWPDTLDHPHLRDSKKLTARQREELRLFIEEHATAWAVGV 74 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-PEDLPCQAFAVIKGDSISL 144 A+ Q I + NI A++ A+ A+E L P LIDG P + ++KGD L Sbjct: 75 ATIQEIQQINILHASMLAMQRAIEALPCTPERLLIDGNYYDPRPDEVEYHTIVKGDDRYL 134 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AK RD M ++YP YG++ + GYPTA+H++ I++ G +HR F+ L Sbjct: 135 AIAAASILAKTHRDAYMTQQAQEYPHYGWEQNKGYPTAQHREGIRQYGSCPLHRQGFQLL 194 Query: 205 R 205 + Sbjct: 195 Q 195 >gi|302865895|ref|YP_003834532.1| ribonuclease H [Micromonospora aurantiaca ATCC 27029] gi|302568754|gb|ADL44956.1| Ribonuclease H [Micromonospora aurantiaca ATCC 27029] Length = 291 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 68/200 (34%), Positives = 108/200 (54%), Gaps = 4/200 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69 + LE ++ + VAG DE GRGA AGP+V AA IL + DSK ++ RE Sbjct: 16 YALERALQRRGFRHVAGADEAGRGACAGPLVAAAAILPEGRRGEIDELADSKLLTPAARE 75 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +++++ + A+ ++ + +D +H L A+ A+ +L P L DG + + Sbjct: 76 RVHDEVVARALAYAVVVIPAEEVDARGLHVCNLAAMRRALASLTTRPEYVLTDGFGV-DG 134 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L AV KGD ++ +AAAS++AKVTRDR+M ++P YGF H GY TA+H + Sbjct: 135 LDVPGLAVWKGDRVAACVAAASVLAKVTRDRIMVELDGRFPGYGFAEHKGYITAEHSAAL 194 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 + GP HR ++ + +S Sbjct: 195 RALGPCREHRFSYVNVAAVS 214 >gi|34558029|ref|NP_907844.1| ribonuclease HII RNase HII [Wolinella succinogenes DSM 1740] gi|34483747|emb|CAE10744.1| RIBONUCLEASE HII RNASE HII [Wolinella succinogenes] Length = 183 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 67/185 (36%), Positives = 98/185 (52%), Gaps = 9/185 (4%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDE GRG LAG + VA ++L G+ DSKK+S K R LY++I +A I Sbjct: 1 MRICGIDEAGRGTLAGSLFVAGVVL--EIEIEGLRDSKKLSKKNRFRLYDEIVQNASFHI 58 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ-AFAVIKGDSI 142 +S Q +D + ++I QV S ++DG + Q +I+GDS+ Sbjct: 59 VESSAQKVDSLGLGICLRESILEICT--QVSADSYIMDGNT---SFGVQGVETLIRGDSL 113 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AK ++DR M + +P+YGF H GY T H + I G S HR +F+ Sbjct: 114 LPCISAASILAKASKDREMERLDRLHPEYGFAKHCGYGTKAHLEAILHLGYSPFHRQSFK 173 Query: 203 PLRNL 207 L+ L Sbjct: 174 -LKRL 177 >gi|188588936|ref|YP_001920597.1| ribonuclease HII [Clostridium botulinum E3 str. Alaska E43] gi|188499217|gb|ACD52353.1| ribonuclease HII [Clostridium botulinum E3 str. Alaska E43] Length = 271 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 81/195 (41%), Positives = 113/195 (57%), Gaps = 8/195 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKK 67 +E + E VAG+DEVGRG LAGP+V ++ILD + +NDSKK++H K Sbjct: 75 YEFDKSFGE--FKYVAGVDEVGRGPLAGPIVACSVILDLNVIDEELILYLNDSKKLNHIK 132 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 REEL I A+ SIS +S++ ID+ I + + NL + P L DG + Sbjct: 133 REELAIIIKEKALAYSISLSSNKEIDERGIAYCNNNVFLDSCNNLSIKPELVLSDGYLV- 191 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 +++ VIKGD+ S SIAAASI+AKV RD LM+ KYP Y F++++GY T KH Sbjct: 192 KNIDIANKFVIKGDTKSASIAAASILAKVYRDNLMKEYSIKYPHYDFENNMGYGTQKHID 251 Query: 187 VIKEKGPSCIHRLTF 201 +K+ G IHR +F Sbjct: 252 GLKKYGKCEIHRNSF 266 >gi|153934073|ref|YP_001384616.1| ribonuclease HII [Clostridium botulinum A str. ATCC 19397] gi|153935357|ref|YP_001388133.1| ribonuclease HII [Clostridium botulinum A str. Hall] gi|189043578|sp|A7FW05|RNH2_CLOB1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|152930117|gb|ABS35617.1| ribonuclease HII [Clostridium botulinum A str. ATCC 19397] gi|152931271|gb|ABS36770.1| ribonuclease HII [Clostridium botulinum A str. Hall] Length = 269 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 86/188 (45%), Positives = 119/188 (63%), Gaps = 6/188 (3%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEK 74 R N + +AG+DEVGRG LAGP+V AA++LD N F I DSKK+S KKREEL Sbjct: 78 RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRVFNIKDSKKLSEKKREELDII 137 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I AI +I+ ++ ID+ I + + + AVE L+V P L DG ++ ++L + Sbjct: 138 IREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAV-KNLNIRN 196 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGDS S+SIA++SIIAKV RD +M+ K YGF+ + GY T +H Q IK+ GP Sbjct: 197 EFIIKGDSKSISIASSSIIAKVYRDSMMKEYSKGLNMYGFNHNAGYGTEEHVQAIKKHGP 256 Query: 194 SCIHRLTF 201 S IHR++F Sbjct: 257 SKIHRMSF 264 >gi|281357062|ref|ZP_06243552.1| Ribonuclease H [Victivallis vadensis ATCC BAA-548] gi|281316620|gb|EFB00644.1| Ribonuclease H [Victivallis vadensis ATCC BAA-548] Length = 223 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 84/198 (42%), Positives = 113/198 (57%), Gaps = 4/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E ++ VAG+DEVGRG LAGPVV AA++ G+ DSK++ RE L Sbjct: 16 LRPECECWQEGFCFVAGVDEVGRGPLAGPVVAAAVVFPRGVPWPGVYDSKQLKAADRERL 75 Query: 72 YEKITSS--AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 +I S I I + ID+ NI AT A+ AV + L+DGR + ++L Sbjct: 76 DREIRSVPGVRIGIGEVPVEEIDRINILNATHRAMREAVLAAGEV-DFILVDGRPV-KNL 133 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 PC + A++KGDS S SIAAASI+AKV RDRLM ++P YGF H GY TA H + ++ Sbjct: 134 PCPSRALVKGDSRSASIAAASIVAKVYRDRLMDELDLRWPGYGFKEHKGYGTAAHLESLR 193 Query: 190 EKGPSCIHRLTFRPLRNL 207 GP HR +FRP+R + Sbjct: 194 RLGPCPAHRKSFRPVREI 211 >gi|308183433|ref|YP_003927560.1| ribonuclease HII [Helicobacter pylori PeCan4] gi|308065618|gb|ADO07510.1| ribonuclease HII [Helicobacter pylori PeCan4] Length = 204 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 64/190 (33%), Positives = 95/190 (50%), Gaps = 11/190 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII 81 V GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L KI + + Sbjct: 2 VLGIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLENKIKTHGEV 61 Query: 82 S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136 + S + ID + AI +EN + + IDG + + + P + Sbjct: 62 GFFVVKKSAEAIDNLGLGACLKLAIQEILENNRSLANQIKIDGNTAFGLNKRYP-NIQTI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK +DR M H + +YG+D + GY T +H + I + G + Sbjct: 121 IKGDEKVAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRRSF-TLKN 189 >gi|315502439|ref|YP_004081326.1| ribonuclease h [Micromonospora sp. L5] gi|315409058|gb|ADU07175.1| Ribonuclease H [Micromonospora sp. L5] Length = 291 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 68/200 (34%), Positives = 108/200 (54%), Gaps = 4/200 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69 + LE ++ + VAG DE GRGA AGP+V AA IL + DSK ++ RE Sbjct: 16 YALERALQRRGFRHVAGADEAGRGACAGPLVAAAAILPEGRRGEIDELADSKLLTPAARE 75 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +++++ + A+ ++ + +D +H L A+ A+ +L P L DG + + Sbjct: 76 RVHDEVVARALAYAVVVIPAEEVDARGLHVCNLAAMRRALASLTTRPEYVLTDGFGV-DG 134 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L AV KGD ++ +AAAS++AKVTRDR+M ++P YGF H GY TA+H + Sbjct: 135 LDVPGLAVWKGDRVAACVAAASVLAKVTRDRMMVELDGRFPGYGFAEHKGYITAEHSAAL 194 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 + GP HR ++ + +S Sbjct: 195 RALGPCREHRFSYVNVAAVS 214 >gi|116328318|ref|YP_798038.1| ribonuclease H [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331044|ref|YP_800762.1| ribonuclease H [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121062|gb|ABJ79105.1| Ribonuclease H [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124733|gb|ABJ76004.1| Ribonuclease H [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 223 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 87/218 (39%), Positives = 110/218 (50%), Gaps = 23/218 (10%) Query: 6 IPE--RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--------F 55 +PE HFE E P GIDE GRG AGP+ VA + N + Sbjct: 1 MPESFFTHFEPEEYRFYSESIP-CGIDEAGRGPYAGPLSVALVSFSQNTLHQILEGKLLK 59 Query: 56 GINDSKKISHKKREELYEKITSSAIISIS-SASHQYIDKHNIHKATLD----AIYHAVEN 110 G+ DSKK+S KKRE LY +I A IS S YID+ I++A L+ A+ Sbjct: 60 GLTDSKKLSEKKREALYPEILKIAQISCQTFLSPNYIDREGINRAVLEGIRKCAKMAIRG 119 Query: 111 LQ-VIPRSALIDGRSIPEDLP------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163 + +P LIDG P ++ KGD +SIAAASI+AKV+RDR M Sbjct: 120 VSSTLPLQLLIDGNYNFNRYPEWNYFKNRSSFYTKGDLRIVSIAAASILAKVSRDRYMTS 179 Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 KKYPDY FD H GY T H+++I G S IHR +F Sbjct: 180 ISKKYPDYRFDRHKGYGTKLHEELILRYGLSDIHRRSF 217 >gi|258542064|ref|YP_003187497.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-01] gi|256633142|dbj|BAH99117.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-01] gi|256636199|dbj|BAI02168.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-03] gi|256639254|dbj|BAI05216.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-07] gi|256642308|dbj|BAI08263.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-22] gi|256645363|dbj|BAI11311.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-26] gi|256648418|dbj|BAI14359.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-32] gi|256651471|dbj|BAI17405.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654462|dbj|BAI20389.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-12] Length = 215 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 80/218 (36%), Positives = 107/218 (49%), Gaps = 40/218 (18%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGAL------------------AGPVVVAAIILDP 50 P F E + VAG+DEVGRG L AA+I Sbjct: 6 MPDFTREQQLG----GRVAGVDEVGRGPLAGPVVAAAVVFGAGVPADL-----AAVI--- 53 Query: 51 NNIPFGINDSKKISHKKREELYEKITSSA--IISISSASHQYIDKHNIHKATLDAIYHAV 108 +DSKK+ RE + E++ I I +AS IDK NIH A A+ AV Sbjct: 54 -------DDSKKLKPAVREAIAERLPQVPGIEIGIGAASTAEIDKLNIHHAAHLAMQRAV 106 Query: 109 ENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 L +P L+DG +P D C A A++ GD +SLSIAAASI+AKV RDR M ++ Sbjct: 107 GRLPRLPDHVLVDGNKLP-DFGCDAQAIVGGDRVSLSIAAASIVAKVVRDRAMARLDARW 165 Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 PDYG++ + GY TA H++ + G + HR TF +R Sbjct: 166 PDYGWEKNAGYGTAVHRKALISVGITPHHRKTFGTVRR 203 >gi|182416696|ref|ZP_02948097.1| ribonuclease HII [Clostridium butyricum 5521] gi|237668559|ref|ZP_04528543.1| ribonuclease HII (RNase HII) [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379458|gb|EDT76951.1| ribonuclease HII [Clostridium butyricum 5521] gi|237656907|gb|EEP54463.1| ribonuclease HII (RNase HII) [Clostridium butyricum E4 str. BoNT E BL5262] Length = 273 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 81/190 (42%), Positives = 109/190 (57%), Gaps = 8/190 (4%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSS 78 +AG+DEVGRG LAGP+V ++LD + + +NDSKK+ KREEL E I Sbjct: 83 YKHIAGVDEVGRGPLAGPIVACCVMLDLNVLDDELILYLNDSKKLKESKREELAEIIKEK 142 Query: 79 AII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A+ IS S+ ID+ I A + +L + P L DG + + + + +VI Sbjct: 143 AVCFKISECSNYEIDEIGIGVANNKVFLESCNSLSIKPDLVLSDGYLV-KGIEIENKSVI 201 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD+ S IAAASIIAKV RD LM+ KKY Y F+++ GY TAKH I+E G IH Sbjct: 202 KGDTKSACIAAASIIAKVYRDNLMKEYAKKYSCYDFENNAGYGTAKHMNAIREHGKCEIH 261 Query: 198 RLTFRPLRNL 207 R +F L+NL Sbjct: 262 RNSF--LKNL 269 >gi|208435220|ref|YP_002266886.1| ribonuclease HII [Helicobacter pylori G27] gi|238056779|sp|B5Z8X1|RNH2_HELPG RecName: Full=Ribonuclease HII; Short=RNase HII gi|208433149|gb|ACI28020.1| ribonuclease HII [Helicobacter pylori G27] Length = 204 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 64/190 (33%), Positives = 95/190 (50%), Gaps = 11/190 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG LAG + VA + D + G+ DSKK+S KKR L +KI + + Sbjct: 2 ILGIDEAGRGCLAGSLFVAGVACDDQTALEFLKMGLKDSKKLSPKKRFFLEDKIKTHGEV 61 Query: 82 S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136 + S ID + A+ +EN + IDG + + + P + Sbjct: 62 GFFVVKKSANEIDSLGLGACLKLAVQEILENGCSLANEIKIDGNTAFGLNKRYP-NIQTI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK +DR MR H + +YG+D + GY T +H + I + G + Sbjct: 121 IKGDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAISKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRHSF-TLKN 189 >gi|93006331|ref|YP_580768.1| ribonuclease H [Psychrobacter cryohalolentis K5] gi|122415238|sp|Q1QAL9|RNH2_PSYCK RecName: Full=Ribonuclease HII; Short=RNase HII gi|92394009|gb|ABE75284.1| RNase HII [Psychrobacter cryohalolentis K5] Length = 286 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 70/219 (31%), Positives = 99/219 (45%), Gaps = 39/219 (17%) Query: 27 AGIDEVGRGALAGPVVVAAIILD------------PNNIPFGINDSKKISHKKREELYEK 74 G+DE GRG L G V VA+ IL + + DSK++S KKR+ LY Sbjct: 64 IGVDEAGRGPLLGSVNVASAILPRAWSGLIEGQPLKDTPLSILTDSKQLSEKKRDMLYPL 123 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHA---------------VENLQVIPRSA 118 + AI I+ ID+ NI +AT+ + +++ + Sbjct: 124 VQQHAIGYVIADIPAAVIDQVNILQATMLGMRLCTEVMLEVIAYHLNDMAQDVHQLHAEV 183 Query: 119 LIDGRSIPE-----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 L DG PE + A IKGD+ SIAAASI+AKV+RD+ M + Sbjct: 184 LFDGNRCPELNYARLVELGVEEKVDCQAWIKGDARHTSIAAASILAKVSRDKTMYALDAQ 243 Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 +P+YG H GYPT H + I+ G HR +F P+R Sbjct: 244 HPEYGIAKHKGYPTRAHMEAIETYGVLAAHRRSFAPVRK 282 >gi|148259652|ref|YP_001233779.1| ribonuclease H [Acidiphilium cryptum JF-5] gi|166225163|sp|A5FW78|RNH2_ACICJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|146401333|gb|ABQ29860.1| RNase HII [Acidiphilium cryptum JF-5] Length = 199 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 88/200 (44%), Positives = 112/200 (56%), Gaps = 9/200 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG---INDSKKISH 65 P F E + VAG+DEVGRG LAGPVV AA IL + P I+DSK++S Sbjct: 1 MPDFSRELALG----GVVAGVDEVGRGPLAGPVVAAAAILPADLPPEIAALIDDSKRLSP 56 Query: 66 KKREE-LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 +RE L I S A IS ++AS I + NI +A+L A+ AV L V P L+DG Sbjct: 57 AQREAALAALIESGAAISAAAASVAEIARLNILQASLLAMRRAVARLAVRPDHVLVDG-Q 115 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + DLP V+ GD +SLSIAAASI AK+ RDR M ++YP YG+ + GY T H Sbjct: 116 VAPDLPMPCTPVVGGDGLSLSIAAASIAAKLVRDRAMSRLDRRYPGYGWARNSGYGTKTH 175 Query: 185 QQVIKEKGPSCIHRLTFRPL 204 + I G + HR F PL Sbjct: 176 RDAILGLGITPHHRRGFGPL 195 >gi|313673941|ref|YP_004052052.1| ribonuclease h [Calditerrivibrio nitroreducens DSM 19672] gi|312940697|gb|ADR19889.1| Ribonuclease H [Calditerrivibrio nitroreducens DSM 19672] Length = 178 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 66/174 (37%), Positives = 93/174 (53%), Gaps = 2/174 (1%) Query: 29 IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSAS 87 +DEVGRG AGPVV AI+L I DSKK++ KR L E I + + I Sbjct: 1 MDEVGRGCFAGPVVAVAILLKDGFYDKRIIDSKKLAENKRVVLAELIKENMLDCGIGVVC 60 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 IDK NI +AT A+ A+ ++V +ID + +L A IK + + +A Sbjct: 61 AGLIDKLNILRATKQAMQVAISRIRVGYDRVVIDAVKL-NNLNTPHEAHIKAEDKFMEVA 119 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 AASI+AKV RD LM+ H +P Y + + GY T H + I++ G + +HR TF Sbjct: 120 AASIVAKVYRDNLMKDMHYLFPQYNWYKNKGYGTPDHIEAIRKFGITPLHRKTF 173 >gi|71065472|ref|YP_264199.1| ribonuclease HII [Psychrobacter arcticus 273-4] gi|97189215|sp|Q4FT93|RNH2_PSYA2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|71038457|gb|AAZ18765.1| probable ribonuclease HII [Psychrobacter arcticus 273-4] Length = 287 Score = 194 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 69/220 (31%), Positives = 100/220 (45%), Gaps = 40/220 (18%) Query: 27 AGIDEVGRGALAGPVVVAAIILD------------PNNIPFGINDSKKISHKKREELYEK 74 G+DE GRG L G V VA+ IL + + DSK++S KKR+ LY Sbjct: 64 IGVDEAGRGPLLGSVNVASAILPRAWSGLIEAQLLKDTPLSILTDSKQLSEKKRDLLYPL 123 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHA---------------VENLQVIPRSA 118 + AI I+ ID+ NI +AT+ + +++ + + Sbjct: 124 VQQYAIGYIIADIPAAVIDQINILQATMLGMRLCTEILLEVIAHHLNDMAQDIHQLQTAV 183 Query: 119 LIDGRSIPE------------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 L DG PE + A +KGD+ SIAAASI+AKV+RD+ M Sbjct: 184 LFDGNRCPELNYTSLAQLGIKESMIDCQAWVKGDARHTSIAAASILAKVSRDKTMYALDT 243 Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 ++P+YG H GYPT H + I+ G HR +F P+R Sbjct: 244 EHPEYGIAKHKGYPTRAHMEAIETYGVLSAHRRSFAPVRK 283 >gi|294056229|ref|YP_003549887.1| Ribonuclease H [Coraliomargarita akajimensis DSM 45221] gi|293615562|gb|ADE55717.1| Ribonuclease H [Coraliomargarita akajimensis DSM 45221] Length = 238 Score = 194 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 75/214 (35%), Positives = 100/214 (46%), Gaps = 34/214 (15%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--------FGINDSKKISHKKRE--- 69 + + + GIDE GRG LAGPVV A +L + INDSK++S RE Sbjct: 13 QELDWLIGIDEAGRGCLAGPVVAGACVLADDFFDNVSALERSARINDSKQLSADAREGQY 72 Query: 70 ELYEKITSSAIISISSAS--HQYIDKHNIHKATLDAIYHAVENLQVIPR----------- 116 L E + +I + AS I + NI A A+ AV+ L V Sbjct: 73 RLLEDLQGEGLIDFAVASGTVTEIAELNILGANRLAMQRAVDALAVRATGWELPVLGAED 132 Query: 117 ---------SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 ++DGR + P ++KGD SL+IA ASI AKVTRDRLM ++ Sbjct: 133 PLFAAQAAVKLIVDGRPLKP-WPYAHEGIVKGDGKSLAIAMASIAAKVTRDRLMLELDQQ 191 Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 YP YGF H GY T +H+ + +GP HR F Sbjct: 192 YPQYGFAQHKGYGTKQHRHALAAEGPCPEHRELF 225 >gi|47459459|ref|YP_016321.1| ribonuclease HII [Mycoplasma mobile 163K] gi|47458789|gb|AAT28110.1| ribonuclease HII [Mycoplasma mobile 163K] Length = 205 Score = 194 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 64/196 (32%), Positives = 99/196 (50%), Gaps = 2/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ + + + DEVGRG+LAGP+VVA + L PN + DSKK++ ++REEL Sbjct: 11 YDFDKRFYNE-FESIIACDEVGRGSLAGPIVVACVNLKPNFFNEKVRDSKKLNPRQREEL 69 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I + + + ID N +AT A + + ++ Sbjct: 70 SILIKENGSFHFCYINSKEIDLLNPLEATKKATTSCLNKFEEKGSQIILLDYLSNFSYSK 129 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA-HKKYPDYGFDSHVGYPTAKHQQVIKE 190 + + KGD+ S SIA+ASI+AKV RD M + ++ Y F + GY T H + IK Sbjct: 130 KFINIKKGDNTSFSIASASILAKVERDNFMINLNNDEFDIYDFFKNKGYGTKNHLEAIKI 189 Query: 191 KGPSCIHRLTFRPLRN 206 GPS IHRL+++PL+ Sbjct: 190 FGPSKIHRLSYKPLKK 205 >gi|116671022|ref|YP_831955.1| ribonuclease HII [Arthrobacter sp. FB24] gi|189043563|sp|A0JXT5|RNH2_ARTS2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|116611131|gb|ABK03855.1| Ribonuclease H [Arthrobacter sp. FB24] Length = 221 Score = 194 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 72/218 (33%), Positives = 106/218 (48%), Gaps = 22/218 (10%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKI 63 + P + E +AGIDEVGRGA+AGPV V ++D + + DSK + Sbjct: 1 MSVAPTLDYEHRFLSSGARLLAGIDEVGRGAIAGPVTVGITVVDLSRPVLLDDVRDSKLL 60 Query: 64 SHKKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHA---VENLQVIPRSAL 119 RE L + + ++ S + AS ID I A A A + V P L Sbjct: 61 KESDRERLEPLVRNWSVASAVGHASAGEIDALGIIAALRTAGTRAWLQILAAGVTPDVVL 120 Query: 120 IDGRS----------IPEDLPC------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163 +DG + +D P ++K D LS+AAASI+AKV RDR+MR Sbjct: 121 LDGSHNWLSPETQASLFDDAPAGPGCDAPVHTLVKADMQCLSVAAASILAKVERDRIMRS 180 Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 H +YP +G+D + GY TA H++ ++ GPS HR+++ Sbjct: 181 LHGEYPAFGWDENKGYGTASHKEALRAAGPSPYHRVSW 218 >gi|329114181|ref|ZP_08242943.1| Ribonuclease HII [Acetobacter pomorum DM001] gi|326696257|gb|EGE47936.1| Ribonuclease HII [Acetobacter pomorum DM001] Length = 215 Score = 194 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 80/218 (36%), Positives = 107/218 (49%), Gaps = 40/218 (18%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGAL------------------AGPVVVAAIILDP 50 P F E + VAG+DEVGRG L AA+I Sbjct: 6 MPDFTREQQLG----GRVAGVDEVGRGPLAGPVVAAAVVFGAGVPADL-----AAVI--- 53 Query: 51 NNIPFGINDSKKISHKKREELYEKITSSA--IISISSASHQYIDKHNIHKATLDAIYHAV 108 +DSKK+ RE + E++ I I +AS IDK NIH A A+ AV Sbjct: 54 -------DDSKKLKPAVREAIAERLPQVPGIEIGIGAASTAEIDKLNIHHAAHLAMQRAV 106 Query: 109 ENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 L +P L+DG +P D C A A++ GD +SLSIAAASI+AKV RDR M ++ Sbjct: 107 GRLPRLPDHVLVDGNKLP-DFGCAAQAIVGGDRVSLSIAAASIVAKVVRDRAMARLDARW 165 Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 PDYG++ + GY TA H++ + G + HR TF +R Sbjct: 166 PDYGWEKNAGYGTAVHRKALISVGITPHHRKTFGTVRR 203 >gi|163851219|ref|YP_001639262.1| ribonuclease H [Methylobacterium extorquens PA1] gi|163662824|gb|ABY30191.1| Ribonuclease H [Methylobacterium extorquens PA1] Length = 216 Score = 194 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 74/183 (40%), Positives = 103/183 (56%), Gaps = 5/183 (2%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKKREELYEKITSS 78 V G DEVGRGAL GPV+VAA+ DP P ++DSK++ RE L I + Sbjct: 22 YPAVIGCDEVGRGALCGPVMVAAVWFDPVAFPPEILARLDDSKRLDRAAREALTPLIRAH 81 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 A +S+++ S +D+ N+ ATLDA+ AV L + + L+DGR L AVI Sbjct: 82 ARVSLAAGSRALVDRVNVRGATLDAMRRAVLGLGLDA-TVLVDGRDPIPGLTQGCRAVIG 140 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD + IAAASI+AK RD +MR ++P Y ++ + GY TA H + +G S HR Sbjct: 141 GDRLVPQIAAASIVAKTFRDEIMRRLAPRHPAYAWERNAGYGTAAHLAGLTAQGRSPHHR 200 Query: 199 LTF 201 L+F Sbjct: 201 LSF 203 >gi|317182569|dbj|BAJ60353.1| ribonuclease HII [Helicobacter pylori F57] Length = 204 Score = 194 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 65/187 (34%), Positives = 93/187 (49%), Gaps = 9/187 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII-- 81 GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L +KI + I Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEIKF 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139 + S ID + AI +ENL P + IDG + +IKG Sbjct: 64 WVVKKSANEIDNLGLGACLKLAIQEILENLSASPHAIKIDGNTAFGLNKRYSNIETIIKG 123 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D IA AS++AK +DR MR H + +YG+D + GY T +H + + + G + HR Sbjct: 124 DEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPFHRH 183 Query: 200 TFRPLRN 206 +F L+N Sbjct: 184 SF-TLKN 189 >gi|240138372|ref|YP_002962844.1| RNAse HII [Methylobacterium extorquens AM1] gi|240008341|gb|ACS39567.1| RNAse HII [Methylobacterium extorquens AM1] Length = 216 Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 74/183 (40%), Positives = 103/183 (56%), Gaps = 5/183 (2%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKKREELYEKITSS 78 V G DEVGRGAL GPV+VAA+ DP P ++DSK++ RE L I + Sbjct: 22 YPAVIGCDEVGRGALCGPVMVAAVWFDPVAFPPEILARLDDSKRLDRAAREALTPLIRAH 81 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 A +S+++ S +D+ N+ ATLDA+ AV L + + L+DGR L AVI Sbjct: 82 ARVSLAAGSRALVDRVNVRGATLDAMRRAVLGLGLDA-TVLVDGRDPIPGLTQGCRAVIG 140 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD + IAAASI+AK RD +MR ++P Y ++ + GY TA H + +G S HR Sbjct: 141 GDRLVPQIAAASIVAKTFRDEIMRRLAPRHPAYAWERNAGYGTAAHLAGLTAQGRSPHHR 200 Query: 199 LTF 201 L+F Sbjct: 201 LSF 203 >gi|188580997|ref|YP_001924442.1| ribonuclease H [Methylobacterium populi BJ001] gi|179344495|gb|ACB79907.1| Ribonuclease H [Methylobacterium populi BJ001] Length = 232 Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 74/188 (39%), Positives = 104/188 (55%), Gaps = 5/188 (2%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKKREELYE 73 R V G DEVGRGAL GPV+VAA+ DP P ++DSK++ RE L Sbjct: 27 ARAATYPAVIGCDEVGRGALCGPVMVAAVWFDPLAFPAEILARLDDSKRLDRATREALTP 86 Query: 74 KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I + A +S+++ S +D+ N+ ATLDA+ AV L + + L+DGR L Sbjct: 87 LIRAHARVSLAAGSRALVDRVNVRGATLDAMRRAVAGLGLDA-AVLVDGRDGIPGLVQPC 145 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 AV+ GD + IAAASI+AK RD LMR ++P Y ++ + GY TA H + +G Sbjct: 146 RAVVGGDRLVPQIAAASIVAKTCRDDLMRRLALRHPAYAWERNAGYGTAAHLAGLTAQGR 205 Query: 194 SCIHRLTF 201 S HR++F Sbjct: 206 SPHHRVSF 213 >gi|254560918|ref|YP_003068013.1| RNAse HII [Methylobacterium extorquens DM4] gi|254268196|emb|CAX24115.1| RNAse HII [Methylobacterium extorquens DM4] Length = 216 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 74/183 (40%), Positives = 103/183 (56%), Gaps = 5/183 (2%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKKREELYEKITSS 78 V G DEVGRGAL GPV+VAA+ DP P ++DSK++ RE L I + Sbjct: 22 YPAVIGCDEVGRGALCGPVMVAAVWFDPVAFPPEILARLDDSKRLDRAAREALTPLIRAH 81 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 A +S+++ S +D+ N+ ATLDA+ AV L + + L+DGR L AVI Sbjct: 82 ARVSLAAGSRALVDRVNVRGATLDAMRRAVLGLGLDA-TVLVDGRDPIPGLTQGCRAVIG 140 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD + IAAASI+AK RD +MR ++P Y ++ + GY TA H + +G S HR Sbjct: 141 GDRLVPQIAAASIVAKTFRDEIMRRLAPRHPAYAWERNAGYGTAAHLAGLTAQGRSPHHR 200 Query: 199 LTF 201 L+F Sbjct: 201 LSF 203 >gi|170750072|ref|YP_001756332.1| ribonuclease H [Methylobacterium radiotolerans JCM 2831] gi|170656594|gb|ACB25649.1| Ribonuclease H [Methylobacterium radiotolerans JCM 2831] Length = 232 Score = 194 bits (493), Expect = 7e-48, Method: Composition-based stats. Identities = 81/179 (45%), Positives = 110/179 (61%), Gaps = 7/179 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAIIS 82 G DEVGRGAL GPVVVAA+ DP IP ++DSK++ RE L I + A ++ Sbjct: 52 IGCDEVGRGALCGPVVVAAVWFDPTAIPPDLLAALDDSKRVPEPVRERLAPLIRAHARVA 111 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 +++ S ID+ NI ATLDA+ AV L + L+DGR LP + AVI GD + Sbjct: 112 VAAGSRALIDRINIRGATLDAMARAVARLGLAAP-VLVDGRDALPGLPGR--AVIGGDHL 168 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AKV RD+LMR +++P YG++ +VGY TA H+ + + G S HRL+F Sbjct: 169 VPQIAAASIVAKVLRDQLMRRLARRHPGYGWERNVGYGTAVHRAGLTQLGRSAHHRLSF 227 >gi|158522314|ref|YP_001530184.1| ribonuclease H [Desulfococcus oleovorans Hxd3] gi|158511140|gb|ABW68107.1| Ribonuclease H [Desulfococcus oleovorans Hxd3] Length = 195 Score = 194 bits (493), Expect = 7e-48, Method: Composition-based stats. Identities = 88/194 (45%), Positives = 115/194 (59%), Gaps = 5/194 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E R +AG+DE GRG LAGPVV AA++ + I DSKK+S KKR LY+ Sbjct: 4 YEDSARSDGFSIIAGLDEAGRGPLAGPVVAAAVVFPDDYTNDRITDSKKLSAKKRASLYD 63 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLPC 131 I A+ + I ID+ NI +A+L A+ AVENL P LIDG +IP P Sbjct: 64 DIYRDALTVGIGIVDAVEIDRINILQASLLAMAMAVENLFPQPDFLLIDGTFTIPR--PV 121 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++KGDS S+SIAAASI+AKV+RD +M H YP++GF H GYPT H+ I + Sbjct: 122 GQRPIVKGDSASISIAAASIVAKVSRDNMMERYHLDYPEFGFSQHKGYPTKAHRNAIFQY 181 Query: 192 GPSCIHRLTFRPLR 205 GP+ IHR +F +R Sbjct: 182 GPTLIHRASF-TVR 194 >gi|297202855|ref|ZP_06920252.1| ribonuclease HII [Streptomyces sviceus ATCC 29083] gi|197717340|gb|EDY61374.1| ribonuclease HII [Streptomyces sviceus ATCC 29083] Length = 233 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 74/202 (36%), Positives = 113/202 (55%), Gaps = 2/202 (0%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R +AG+DEVGRGA AGPV V A + P G+ DSK +S K Sbjct: 4 EPPTHTVERSLRATTGAKIIAGVDEVGRGAWAGPVTVCAAVTGLRRPPQGLTDSKLLSVK 63 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R EL E++ + ++ AS + ID + A A A+E L V P + ++DG+ Sbjct: 64 RRTELAEELRTWVTSYALGHASPEEIDHMGMTAALRIAAVRALEALPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + VIKGD +++AAAS+IAKV RD++M + D+GF ++ GYP+ H+ Sbjct: 124 YLGTPWKVRTVIKGDQSCVAVAAASVIAKVQRDKMMAELGIDHADFGFAANAGYPSPVHK 183 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 ++ +GP+ HRL++ L L Sbjct: 184 AALEVRGPTPYHRLSWAYLDAL 205 >gi|217032077|ref|ZP_03437577.1| hypothetical protein HPB128_16g37 [Helicobacter pylori B128] gi|298735652|ref|YP_003728177.1| ribonuclease HII [Helicobacter pylori B8] gi|216946225|gb|EEC24833.1| hypothetical protein HPB128_16g37 [Helicobacter pylori B128] gi|298354841|emb|CBI65713.1| ribonuclease HII [Helicobacter pylori B8] Length = 204 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 65/190 (34%), Positives = 96/190 (50%), Gaps = 11/190 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII 81 V GIDE GRG LAG + VA + D + G+ DSKK+S KKR L +KI + + Sbjct: 2 VLGIDEAGRGCLAGSLFVAGVACDEKTALEFLKMGLKDSKKLSPKKRFFLEDKIKTHGEV 61 Query: 82 S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136 + S ID + +I +EN + IDG + + + P + Sbjct: 62 GFFVVKKSANEIDSLGLGACLRLSIEEILENGCSLANEIKIDGNTAFGLNKRYPHIQ-TI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK ++DR MR H + +YG+D + GY T +H + I + G + Sbjct: 121 IKGDEKIAQIAMASVLAKASKDREMRQLHALFKEYGWDKNCGYGTKQHIEAIIKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRRSF-TLKN 189 >gi|296270667|ref|YP_003653299.1| ribonuclease H [Thermobispora bispora DSM 43833] gi|296093454|gb|ADG89406.1| Ribonuclease H [Thermobispora bispora DSM 43833] Length = 253 Score = 193 bits (492), Expect = 9e-48, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 10/206 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG---------INDSKK 62 + +E +R +AG+DEVGRGA AGPVVV + D + P + DSK Sbjct: 28 YAIEEELRAAGAVRIAGLDEVGRGAWAGPVVVCVAVTDLSPPPELPGRGGRSVRLTDSKL 87 Query: 63 ISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 ++ RE E + I +S Q ID+ + +A A A+ L P + ++D Sbjct: 88 LTRASREAFAEVLPGWLNCHGIGESSPQEIDELGMTEALRLAAERALAALPYRPDAIILD 147 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 G+ P A ++ D S+S+AAAS++AKV RDRLM +++P+YGF + GYP+ Sbjct: 148 GKHDFLRGPWTARCEVQADRRSVSVAAASVLAKVYRDRLMAALGEEHPEYGFADNAGYPS 207 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207 H++ + E GP+ HRL++ L L Sbjct: 208 PVHRRALAEHGPTPHHRLSWSYLDAL 233 >gi|261840038|gb|ACX99803.1| ribonuclease HII [Helicobacter pylori 52] Length = 204 Score = 193 bits (492), Expect = 9e-48, Method: Composition-based stats. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 11/190 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L +KI + + Sbjct: 2 ILGIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEV 61 Query: 82 --SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136 + S ID+ + AI +EN + + IDG + + + P + Sbjct: 62 EFWVVKKSANEIDRLGLGACLKLAIQEILENNRSLANGIKIDGNTAFGLNKRYP-NIQTI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK +DR MR H + +YG+D + GY T +H + + + G + Sbjct: 121 IKGDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRHSF-TLKN 189 >gi|319760422|ref|YP_004124360.1| ribonuclease HII [Candidatus Blochmannia vafer str. BVAF] gi|318039136|gb|ADV33686.1| ribonuclease HII [Candidatus Blochmannia vafer str. BVAF] Length = 208 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 81/189 (42%), Positives = 109/189 (57%), Gaps = 6/189 (3%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI-----PFGINDSKKISHKKREELYEKITSSA 79 +AG+DEVG GAL GP++ +A+I P N G+ DSK ++ KKR +LY+ I + Sbjct: 16 LIAGVDEVGCGALMGPIIASAVIFPPFNNQKKINVAGLVDSKTLNSKKRVKLYKDIQKYS 75 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + SI S IDK N+ KA L A+ AV NL +IP L+DG P IK Sbjct: 76 LSWSIGVVSVSEIDKLNVLKARLLAMKRAVLNLSIIPDLILVDGNKAPFFKNIFYQCFIK 135 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD I+AASIIAKV RDR M I + +YP YG + + GYPT H Q + GP+ HR Sbjct: 136 GDVYIPIISAASIIAKVIRDRAMIILNTQYPQYGLNHNKGYPTNFHIQQLYFYGPTIYHR 195 Query: 199 LTFRPLRNL 207 TF P++++ Sbjct: 196 KTFSPVKHM 204 >gi|15612308|ref|NP_223961.1| ribonuclease HII [Helicobacter pylori J99] gi|7227933|sp|Q9ZJR1|RNH2_HELPJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|4155855|gb|AAD06828.1| RIBONUCLEASE HII [Helicobacter pylori J99] Length = 209 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 64/188 (34%), Positives = 95/188 (50%), Gaps = 11/188 (5%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG LAG + VA ++ + + G+ DSKK+S KKR L +KI + + Sbjct: 9 GIDEAGRGCLAGSLFVAGVVCNEKIALEFLKMGLKDSKKLSPKKRFFLEDKIKTHGEVGF 68 Query: 83 -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138 + S ID + AI VEN + IDG + + + P +IK Sbjct: 69 FVVKKSANEIDHLGLGACLKLAIEEIVENGCSLANEIKIDGNTAFGLNKRYP-NIQTIIK 127 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD IA AS++AK ++DR M H + +YG+D + GY T +H + I + G + HR Sbjct: 128 GDETIAQIAMASVLAKASKDREMLELHALFKEYGWDKNCGYGTKQHIEAINKLGATPFHR 187 Query: 199 LTFRPLRN 206 +F L+N Sbjct: 188 HSF-TLKN 194 >gi|317013110|gb|ADU83718.1| ribonuclease HII [Helicobacter pylori Lithuania75] Length = 204 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 9/187 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS--AII 81 GIDE GRG LAG + VA ++ + + G+ DSKK+S KKR L +KI + Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCNDQTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEVKF 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139 + S ID + A+ +EN + IDG + +IKG Sbjct: 64 FVVKKSTNEIDNLGLGACLKLAMQEILENGCSLANEIKIDGNTAFGLNKRYSNIQTIIKG 123 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D IA AS++AK +DR M H + +YG+D + GY T +H + I + G + HR Sbjct: 124 DEKIAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHRH 183 Query: 200 TFRPLRN 206 +F L+N Sbjct: 184 SF-TLKN 189 >gi|293363996|ref|ZP_06610732.1| ribonuclease HII [Mycoplasma alligatoris A21JP2] gi|292552486|gb|EFF41260.1| ribonuclease HII [Mycoplasma alligatoris A21JP2] Length = 199 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 64/195 (32%), Positives = 111/195 (56%), Gaps = 5/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E+++ +K + G+DEVGR +LAGP+VVA ++ N I DSK+++ +R+ Y+ Sbjct: 4 YESVLLQK-YEKILGLDEVGRDSLAGPIVVACVMFPKNYHNPLIKDSKELTKDQRDIAYK 62 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQV-IPRSALIDGRSIPEDLPC 131 +I AI ++D HN K+++ + +++ ++ + D + Sbjct: 63 EIIKDAITYKYIFLDKDFVDLHNPKKSSIIGMEKLIDSYELDQIDYVITDYEKVNTKF-- 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 Q+ A+ GD S++IAAASI+AKV RD M +YP Y FD + GY T H + +K+ Sbjct: 121 QSRAIKFGDKYSITIAAASIVAKVIRDEYMDKMSLEYPIYAFDKNKGYGTKVHLEALKKY 180 Query: 192 GPSCIHRLTFRPLRN 206 GPS IHR++++P+++ Sbjct: 181 GPSPIHRISYKPVKD 195 >gi|218437055|ref|YP_002375384.1| ribonuclease H [Cyanothece sp. PCC 7424] gi|218169783|gb|ACK68516.1| Ribonuclease H [Cyanothece sp. PCC 7424] Length = 212 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 78/210 (37%), Positives = 112/210 (53%), Gaps = 26/210 (12%) Query: 10 PHFELEAMVREKN-MWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-------------- 54 P F++ + K +AG+DEVGRGAL P Sbjct: 7 PSFDVFLLPEVKGQETLIAGVDEVGRGAL----------FGPVVAGAVVVPVSAIDQLTQ 56 Query: 55 FGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQV 113 G+ DSK++S K+R EL ++I AI +S A+ ID+ NI +A+L A+Y AV L++ Sbjct: 57 LGVKDSKQLSPKRRVELAQQIKGLAIDSHVSFATVGEIDQINILQASLKAMYRAVVKLKI 116 Query: 114 IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 P L+DGR +L + +IKGD S IAAASI+AKV RD L+ +KYP Y Sbjct: 117 NPAVCLVDGRHPLPNLEIRQENIIKGDERSPVIAAASILAKVWRDNLIVRLAQKYPQYDL 176 Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 ++ GY T +H++ + + G S HRL+FRP Sbjct: 177 IANKGYGTLRHREALLKYGASPQHRLSFRP 206 >gi|308185075|ref|YP_003929208.1| ribonuclease HII [Helicobacter pylori SJM180] gi|308060995|gb|ADO02891.1| ribonuclease HII [Helicobacter pylori SJM180] Length = 204 Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 63/190 (33%), Positives = 95/190 (50%), Gaps = 11/190 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L +KI + + Sbjct: 2 ILGIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEV 61 Query: 82 S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136 + S + ID + AI +EN + IDG + + + P + Sbjct: 62 GFFVVKKSAEAIDSLGLGACLKLAIQEILENGCSLANEIKIDGNTAFGLDKRYP-NIQTI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK +DR M H + +YG+D + GY T +H + I + G + Sbjct: 121 IKGDETIAQIAMASVLAKTAKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRHSF-TLKN 189 >gi|242309717|ref|ZP_04808872.1| ribonuclease [Helicobacter pullorum MIT 98-5489] gi|239523718|gb|EEQ63584.1| ribonuclease [Helicobacter pullorum MIT 98-5489] Length = 204 Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 96/206 (46%), Gaps = 18/206 (8%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI---PFGI 57 M N++ E P + N + GIDE GRG + G + V +IL P + Sbjct: 1 MKQNNLLELPLY---------NPLEICGIDEAGRGCIGGSLFVCGVILTPTFPKILLEQL 51 Query: 58 NDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117 DSKK+S K R+ L +I A + S + ID + +++ + NLQ Sbjct: 52 QDSKKLSQKTRDNLAPQIQKYAKFHLVKKSAEEIDTKGLSLCIKESLQEILTNLQAP--H 109 Query: 118 ALIDGRSIPEDLPCQA-FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 L DG + + +IKGDS SI+AASI+AK +D+ YP YGF SH Sbjct: 110 YLFDGNC---NFGIHSLQTLIKGDSKIPSISAASILAKNAKDKESAKLDNLYPQYGFKSH 166 Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFR 202 GY T +H + I + G HR +++ Sbjct: 167 KGYGTKEHLKAILDFGYCKEHRKSYK 192 >gi|45657433|ref|YP_001519.1| ribonuclease HII [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600672|gb|AAS70156.1| ribonuclease HII [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 231 Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 87/210 (41%), Positives = 108/210 (51%), Gaps = 21/210 (10%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--------NIPFGINDSKKI 63 FELE P GIDE GRG AGP+ VA + N I G+ DSKK+ Sbjct: 10 FELEEHRFYSESIP-CGIDEAGRGPYAGPLSVALVSFSQNSLTQILEGKILKGLTDSKKL 68 Query: 64 SHKKREELYEKITSSAIISIS-SASHQYIDKHNIHKATLDAIYHAVENLQ-----VIPRS 117 S KKRE LY +I +A S S YID+ I++A L+ I + + P Sbjct: 69 SEKKRESLYPEIIKAAQFSYQTFISPNYIDRKGINRAVLEGILKCTKLINRFTQSKFPLK 128 Query: 118 ALIDGR----SIPE--DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 LIDG PE +L + IKGD +SIAAASI+AKV+RDR M KKYP Y Sbjct: 129 LLIDGNYNFNRYPEWMNLKGCSTFYIKGDLRIVSIAAASILAKVSRDRYMISVSKKYPIY 188 Query: 172 GFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 FD H GY T H+++I G S IHR +F Sbjct: 189 RFDQHKGYGTKLHEELILLHGLSDIHRRSF 218 >gi|297624822|ref|YP_003706256.1| Ribonuclease H [Truepera radiovictrix DSM 17093] gi|297166002|gb|ADI15713.1| Ribonuclease H [Truepera radiovictrix DSM 17093] Length = 211 Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 65/216 (30%), Positives = 100/216 (46%), Gaps = 29/216 (13%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-------- 56 +IP P + LE + ++ +AG+DE GRG Sbjct: 2 TIPTPPDWRLEHTLWQRGYGVLAGVDEAGRG-------------ALAGPVVAAAVVLPRG 48 Query: 57 ---INDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL- 111 DSK +S RE L E++ A+ ++ AS +D+ N+ +AT A A+ L Sbjct: 49 DHPFRDSKTLSPAARETLAEEVRRRALAWAVGCASASEVDRLNVLQATHLAAQRALCALA 108 Query: 112 -QVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 +V + D +P P AV K D+ S+ +AAAS++AK RD LMR ++YP Sbjct: 109 GRVAVDGLVTDFLKLP--FPGPVLAVPKADATSVQVAAASLLAKTVRDALMRRLGERYPA 166 Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 YGF H GY ++ H + + GP HR +F P++ Sbjct: 167 YGFARHKGYGSSTHLRALAAHGPCPEHRRSFGPVQR 202 >gi|294828096|ref|NP_712567.2| ribonuclease H II [Leptospira interrogans serovar Lai str. 56601] gi|293385944|gb|AAN49585.2| ribonuclease H II [Leptospira interrogans serovar Lai str. 56601] Length = 231 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 86/210 (40%), Positives = 108/210 (51%), Gaps = 21/210 (10%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--------NIPFGINDSKKI 63 FELE P GIDE GRG AGP+ VA + N I G+ DSKK+ Sbjct: 10 FELEEHRFYSESIP-CGIDEAGRGPYAGPLSVALVSFSQNSLTQILEGKILKGLTDSKKL 68 Query: 64 SHKKREELYEKITSSAIISIS-SASHQYIDKHNIHKATLDAIYHAVENLQ-----VIPRS 117 S KKRE LY +I +A S S YID+ I++A L+ I + + P Sbjct: 69 SEKKRESLYPEIIKAAQFSYQTFISPNYIDRKGINRAVLEGILKCTKLINRFTQSKFPLK 128 Query: 118 ALIDGR----SIPEDLPCQ--AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 LIDG PE + + + IKGD +SIAAASI+AKV+RDR M KKYP Y Sbjct: 129 LLIDGNYNFNRYPEWMNLKDCSTFYIKGDLRIVSIAAASILAKVSRDRYMISVSKKYPIY 188 Query: 172 GFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 FD H GY T H+++I G S IHR +F Sbjct: 189 RFDQHKGYGTKLHEELILLHGLSDIHRRSF 218 >gi|308064100|gb|ADO05987.1| ribonuclease HII [Helicobacter pylori Sat464] Length = 204 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 63/190 (33%), Positives = 95/190 (50%), Gaps = 11/190 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L +KI + I Sbjct: 2 ILGIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEI 61 Query: 82 --SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136 + S ID + A+ +EN + IDG + + + P + Sbjct: 62 KFWVVKKSANEIDNLGLGACLKLAVQEILENDHSLANQIKIDGNTAFGLNKRYP-NIQTI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK +DR MR H + +YG+D + GY T +H + + + G + Sbjct: 121 IKGDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRHSF-TLKN 189 >gi|109946755|ref|YP_663983.1| ribonuclease HII [Helicobacter acinonychis str. Sheeba] gi|123173609|sp|Q17ZE2|RNH2_HELAH RecName: Full=Ribonuclease HII; Short=RNase HII gi|109713976|emb|CAJ98984.1| rnhB [Helicobacter acinonychis str. Sheeba] Length = 193 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 61/187 (32%), Positives = 92/187 (49%), Gaps = 9/187 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS--AII 81 GIDE GRG L G + VA ++ + + G+ DSKK+S KR L +KI S Sbjct: 4 GIDEAGRGCLVGSLFVAGVVCGEKIALDFLKMGLKDSKKLSQNKRFFLEDKIKSHDEVKF 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139 + S ID ++ A+ +E L + ++ IDG + +IKG Sbjct: 64 CVIKKSAGEIDSLSLGVCLKLAVQEILEKLSPLAQTINIDGNTAFGLNKRYSNLKTIIKG 123 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D IA AS++AK ++DR M H + +YG+D + GY T KH + I + G + HR Sbjct: 124 DEKIAQIAMASVLAKTSKDREMLELHALFKEYGWDKNCGYGTKKHIEAIAKLGATPFHRH 183 Query: 200 TFRPLRN 206 +F L+N Sbjct: 184 SFA-LKN 189 >gi|332978396|gb|EGK15114.1| ribonuclease HII [Psychrobacter sp. 1501(2011)] Length = 308 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 103/237 (43%), Gaps = 57/237 (24%) Query: 27 AGIDEVGRGALAGPVVVAAIILD------------PNNIPFGINDSKKISHKKREELYEK 74 GIDEVGRG L G VVV+ IL + + DSKK++ KRE L+E Sbjct: 65 IGIDEVGRGPLYGSVVVSGAILPCQWSAEIEQNPLQDTPLAILTDSKKLTEAKRERLFEP 124 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---------------------- 111 I A+ I ID+ NI +ATL + A E + Sbjct: 125 IKQQALAYMIVEIPASVIDEVNILQATLMGMRLACEQIMIEMVQALQSNLDKSLEVEGFL 184 Query: 112 -------QVIPRSALIDGRSIPE---------------DLPCQAFAVIKGDSISLSIAAA 149 I + LIDG +P+ A A +KGD+ +IAAA Sbjct: 185 DIHSSSQNHIAFNLLIDGNKVPDLDSQLLQHYNIGPELKHSVNAEAWVKGDARHSAIAAA 244 Query: 150 SIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 S++AKV+RDR + +P YG + H GYPT H + I++ G HR +F+P++ Sbjct: 245 SVLAKVSRDRQLIKDGAAHPGYGLEGHKGYPTKAHIEAIQKLGVLPQHRRSFKPVQE 301 >gi|119963253|ref|YP_948173.1| ribonuclease HII [Arthrobacter aurescens TC1] gi|119950112|gb|ABM09023.1| putative ribonuclease HII [Arthrobacter aurescens TC1] Length = 256 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 70/214 (32%), Positives = 108/214 (50%), Gaps = 22/214 (10%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVA-AII-LDPNNIPFGINDSKKISHKK 67 P ++E + +AG+DEVGRGALAGPV V A++ L+ + + + DSK + + Sbjct: 35 PTLDVERSFLSSGVRLLAGVDEVGRGALAGPVSVGIAVVNLENHGLLADVRDSKLLKPED 94 Query: 68 REELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHA---VENLQVIPRSALIDG- 122 R+ L + A+ S + AS + ID+ I A A A + + P L+DG Sbjct: 95 RDRLEPLVREWAVASAVGHASSREIDQIGIIAALRLAGTRAWFEILAGGITPDVVLLDGS 154 Query: 123 ------------RSIPEDLPC---QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 P+ P +K D LS+AAAS++AKV RDR+M H + Sbjct: 155 HNWLSPDVQASLFDTPDSGPWCEAPVHTRVKADMSCLSVAAASVLAKVARDRIMVDLHSE 214 Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 P YG++ + GY T+ H+ VI+ +GPS HR ++ Sbjct: 215 IPSYGWNVNKGYATSAHRDVIRLQGPSAHHRTSW 248 >gi|218530087|ref|YP_002420903.1| ribonuclease H [Methylobacterium chloromethanicum CM4] gi|218522390|gb|ACK82975.1| Ribonuclease H [Methylobacterium chloromethanicum CM4] Length = 216 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 74/183 (40%), Positives = 103/183 (56%), Gaps = 5/183 (2%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKKREELYEKITSS 78 V G DEVGRGAL GPV+VAA+ DP P ++DSK++ RE L I + Sbjct: 22 YPAVIGCDEVGRGALCGPVMVAAVWFDPVAFPPEILARLDDSKRLDRAAREALTPLIRAH 81 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 A +S+++ S +D+ N+ ATLDA+ AV L + + L+DGR L AVI Sbjct: 82 ARVSLAAGSRALVDRVNVRGATLDAMRRAVLGLGLDA-TVLVDGRDPIPGLTQGCRAVIG 140 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD + IAAASI+AK RD +MR ++P Y ++ + GY TA H + +G S HR Sbjct: 141 GDRLVPQIAAASIVAKTFRDEIMRRLAPRHPAYAWERNAGYGTAAHLAGLTAQGRSQHHR 200 Query: 199 LTF 201 L+F Sbjct: 201 LSF 203 >gi|317011523|gb|ADU85270.1| ribonuclease HII [Helicobacter pylori SouthAfrica7] Length = 204 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 65/188 (34%), Positives = 96/188 (51%), Gaps = 11/188 (5%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG LAG + VA ++ D + G+ DSKK+S KKR L +KI S + Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCDEKTALEFLKMGLKDSKKLSPKKRFFLEDKIKSHDEVGF 63 Query: 83 -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138 + S + ID + AI +EN + + IDG + + + P +IK Sbjct: 64 FVVKKSAESIDSLGLGACLKLAIQEILENGRSLANEIKIDGNTAFGLDKRYPHIQ-TIIK 122 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD IA AS++AK +DR M H + +YG+D + GY T +H + I + G + HR Sbjct: 123 GDETIAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHR 182 Query: 199 LTFRPLRN 206 +F L+N Sbjct: 183 HSF-TLKN 189 >gi|308235361|ref|ZP_07666098.1| ribonuclease HII [Gardnerella vaginalis ATCC 14018] gi|311115100|ref|YP_003986321.1| ribonuclease HII [Gardnerella vaginalis ATCC 14019] gi|310946594|gb|ADP39298.1| ribonuclease HII [Gardnerella vaginalis ATCC 14019] Length = 227 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 72/220 (32%), Positives = 109/220 (49%), Gaps = 28/220 (12%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-----PFGINDSKKIS 64 P F E + + V G+DEVGRG+LAGPV+V A + + I P G+ DSK I+ Sbjct: 5 PSFNFEQDLLKSGFDWVIGLDEVGRGSLAGPVMVGAALFGADKINSGYFPDGLADSKLIN 64 Query: 65 HKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVEN--------LQVIP 115 KRE L E + + ++ S +++ ID+ I A A A+ + L+ Sbjct: 65 AHKREGLLEPLENWCDAFAVGSCTNREIDEWGISYALGVAAIRAISDVQNSMRYKLENAH 124 Query: 116 RSALIDG-----------RSIPE-DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163 +A++DG P D P + ++K D S++AAS+IAKVTRD LM Sbjct: 125 IAAILDGPFNYIGKVSGTFDAPSIDFPVKVHTLVKADQKCASVSAASVIAKVTRDSLMTS 184 Query: 164 A--HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 KY Y + + GY + H+ I E GPS +HR+++ Sbjct: 185 LSDDPKYKIYDWAHNKGYGSKSHRAAILEYGPSDLHRISW 224 >gi|254779865|ref|YP_003057971.1| ribonuclease HII [Helicobacter pylori B38] gi|254001777|emb|CAX30008.1| Ribonuclease HII (RNase HII) [Helicobacter pylori B38] Length = 204 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 62/192 (32%), Positives = 93/192 (48%), Gaps = 9/192 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII 81 V GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L +KI + + Sbjct: 2 VLGIDEAGRGCLAGSLFVAGVVCSEKTALEFLKMGLKDSKKLSPKKRFFLEDKIKTHGEV 61 Query: 82 S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVI 137 + S ID + AI +EN + IDG + +I Sbjct: 62 GFFVVKKSANEIDSLGLGACLKLAIQEILENGCSLANEIKIDGNTAFGLNKRYSNIQTII 121 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD IA AS++AK +DR M H + +YG+D + GY T +H + + + G + H Sbjct: 122 KGDETIAQIAMASVLAKAAKDREMLELHALFKEYGWDKNCGYGTKQHIEAMSKLGATPFH 181 Query: 198 RLTFRPLRNLSV 209 R +F L+N ++ Sbjct: 182 RHSF-TLKNRTL 192 >gi|255321778|ref|ZP_05362933.1| ribonuclease HII [Campylobacter showae RM3277] gi|255301258|gb|EET80520.1| ribonuclease HII [Campylobacter showae RM3277] Length = 191 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 61/183 (33%), Positives = 98/183 (53%), Gaps = 8/183 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + GIDE GRGALAGP+ VAA +L + G+NDSKK++ K+REEL ++I ++ I+ Sbjct: 9 ICGIDEAGRGALAGPMAVAACVLKRD--IAGLNDSKKLTEKRREELLKEIIKNSEFLIAY 66 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S++ ID+ + + A+ + L DG + + ++ D Sbjct: 67 FSNEQIDELGLSECLRRALR--LFKAHFTDCELLYDGNA---NYGTGIKTMVGADGKVAQ 121 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 ++AASI+AKV+RD LM+ + YG+ +H GY T H I G S + R +FR ++ Sbjct: 122 VSAASILAKVSRDALMQAWDGVHSGYGYATHKGYGTKAHLDAIARLGDSPLQRRSFR-VK 180 Query: 206 NLS 208 + Sbjct: 181 SFE 183 >gi|301167133|emb|CBW26712.1| ribonuclease HII [Bacteriovorax marinus SJ] Length = 227 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 116/225 (51%), Gaps = 32/225 (14%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF---------GINDSKK 62 F+LE + + +AG DEVGRG LAGPVV +++D +++ GI DSKK Sbjct: 2 FDLEEI---GDFDFLAGCDEVGRGPLAGPVVGCCVLVDRDSLTVENVDFLLSHGITDSKK 58 Query: 63 ISHKKREEL--------YEKITSSAI---------ISISSASHQYIDKHNIHKATLDAIY 105 IS KR+++ YE + +++ S+ S++ ID+ NI +A+L A+ Sbjct: 59 ISATKRKKILKSLGIEKYELASKNSLTLNKNLKISFSVREISNESIDQLNILRASLKAMG 118 Query: 106 HA-VENLQVIPRSALIDGRS-IPEDL-PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162 A ++ LIDG I L VIKGDS S I ASIIAK RD LM Sbjct: 119 DAFIDCFSGERTKLLIDGNKYIDLGLENVSEEFVIKGDSKSALIGLASIIAKEYRDNLMI 178 Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 KKYP YG + H GYPT H+ I + G + IHR +F+ ++ Sbjct: 179 EMGKKYPGYGLEKHAGYPTKFHKDAISKLGVTPIHRKSFKGVKEF 223 >gi|288962307|ref|YP_003452602.1| ribonuclease HII [Azospirillum sp. B510] gi|288914573|dbj|BAI76058.1| ribonuclease HII [Azospirillum sp. B510] Length = 221 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 85/214 (39%), Positives = 113/214 (52%), Gaps = 27/214 (12%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII-------------LDPNNIP 54 +RP LEA V GIDEVGRG L G L P I Sbjct: 14 QRPDLSLEAGFGAG--RRVCGIDEVGRGPLCG--------PVVAAAVVLPAEGLPPE-IA 62 Query: 55 FGINDSKKISHKKREELYEKITSSAIISISSASHQYI-DKHNIHKATLDAIYHAVENL-Q 112 I+DSK ++ + REE+ I + A+ + + D+ NIH+ATL A+ A E L Sbjct: 63 AQIDDSKAVTRRLREEIEPAIRAHALAFAIAEASAAEIDELNIHRATLLAMRRAYEALPG 122 Query: 113 VIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 V P +ALIDG+ P D+ C+ AV+KGDS SLSIAAASI+AKV RD M YP YG Sbjct: 123 VPPDAALIDGKFTP-DIACERVAVVKGDSRSLSIAAASILAKVARDSEMLRLSAVYPHYG 181 Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 +D + GYPT +H + G + HR++F P++ Sbjct: 182 WDRNAGYPTPEHLDALTRHGVTPHHRVSFAPVKR 215 >gi|224372133|ref|YP_002606505.1| ribonuclease HII [Nautilia profundicola AmH] gi|223589086|gb|ACM92822.1| ribonuclease HII [Nautilia profundicola AmH] Length = 196 Score = 191 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 73/194 (37%), Positives = 101/194 (52%), Gaps = 17/194 (8%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN----------NIPFGINDSKKISHKKREELYEKI 75 + GIDE GRG +AGP+VVA I N +NDSKK++ KKREEL+E I Sbjct: 5 ICGIDEAGRGPIAGPLVVAGCIFKNEKLKVKSEKWENFLQKLNDSKKLNAKKREELFEII 64 Query: 76 TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ-AF 134 + I ++ ID+ + A A+ + L+ L DG S + + Sbjct: 65 QETCEYHIVFVDNKTIDEKGLSFAINYALNEIKKTLK--ANKYLFDGNS---NFGVKGIE 119 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +IKGD I+AASI+AKV+RD+ M KYP Y F H GY T +H + IK+ G S Sbjct: 120 TLIKGDGKIKQISAASILAKVSRDKYMLEIADKYPMYNFKKHKGYITKEHIEEIKKNGFS 179 Query: 195 CIHRLTFRPLRNLS 208 IHR ++R L+ L Sbjct: 180 DIHRKSYR-LKALE 192 >gi|220912962|ref|YP_002488271.1| ribonuclease HII [Arthrobacter chlorophenolicus A6] gi|219859840|gb|ACL40182.1| Ribonuclease H [Arthrobacter chlorophenolicus A6] Length = 260 Score = 191 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 76/219 (34%), Positives = 112/219 (51%), Gaps = 22/219 (10%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVA-AII-LDPNNIPFGINDSKKISH 65 + P E + + + +AG+DEVGRGALAGPV V A++ L+ G+ DSK + Sbjct: 28 KAPTLRHERTFKAQGVRFLAGVDEVGRGALAGPVSVGIAVVDLERQKPLAGVRDSKLLRA 87 Query: 66 KKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALID 121 +RE L + ++ S + AS ID I A A A +++ VIP L+D Sbjct: 88 TERERLEPLVRRWSVASAVGHASAHEIDALGIIAALRLAGTRAWQDILAAGVIPDMVLLD 147 Query: 122 GRS-----------IPEDLP-----CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165 G ++ P +K D LS+AAAS+IAKV RDR MR H Sbjct: 148 GSHNWLSPAEQLSLFDQEAPEAACDAPVHTKVKADMQCLSVAAASVIAKVERDRTMRELH 207 Query: 166 KKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +YPD+G+D + GY T H+ V++ GP+ HR+++R L Sbjct: 208 AEYPDFGWDINNGYATVLHRDVLRAAGPTPYHRVSWRLL 246 >gi|1296968|emb|CAA65177.1| rnhB [Porphyromonas gingivalis] Length = 168 Score = 191 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 61/159 (38%), Positives = 85/159 (53%), Gaps = 1/159 (0%) Query: 47 ILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIY 105 IL + +NDSK++S K+R L I S I I S Q ID+ NI +A+ A++ Sbjct: 1 ILPADFSHPLLNDSKQLSEKQRYTLRPVIESETIGWGIGIVSPQEIDEINILRASFLAMH 60 Query: 106 HAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165 A+E L P LIDG ++ GD+ SIAAASI+AK RD M + Sbjct: 61 RAIEQLPFRPERLLIDGNRFDPFEQIPHHCIVGGDARYRSIAAASILAKTYRDDSMLRLN 120 Query: 166 KKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 K +P YG++ + GYP+ H+ I+ G S HRLTFR + Sbjct: 121 KDFPMYGWERNKGYPSPAHKSAIRRFGVSPHHRLTFRGV 159 >gi|92112710|ref|YP_572638.1| RNase HII [Chromohalobacter salexigens DSM 3043] gi|122420710|sp|Q1R019|RNH2_CHRSD RecName: Full=Ribonuclease HII; Short=RNase HII gi|91795800|gb|ABE57939.1| RNase HII [Chromohalobacter salexigens DSM 3043] Length = 200 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 70/195 (35%), Positives = 97/195 (49%), Gaps = 20/195 (10%) Query: 25 PVAGIDEVGRGALAGPVVVAAI---------ILDPNNIPFGINDSKKISHKKREELYEKI 75 +AG+DEVGRG L ILDP G+ DSK +S K+R L + I Sbjct: 15 RLAGVDEVGRGPL---------VGAVVAAAVILDPARPIEGLADSKTLSEKRRLALADAI 65 Query: 76 TSSAIISISSASHQY-IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A + + ID NI AT A+ A++ L V L+DG +P Sbjct: 66 REQAAACAVAEASAEEIDALNIFHATHLAMRRAIDALPVTAEYLLVDGNRMP-GHHVPGQ 124 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 V+KGD +I AASI+AKVTRD M H+++P+YGF H GYPT +H ++ GP Sbjct: 125 CVVKGDRRHAAIGAASILAKVTRDAQMVALHERHPEYGFARHKGYPTREHLAALERLGPL 184 Query: 195 CIHRLTFRPLRNLSV 209 HR +F P++ + Sbjct: 185 EEHRRSFAPVKQWQL 199 >gi|257784502|ref|YP_003179719.1| Ribonuclease H [Atopobium parvulum DSM 20469] gi|257473009|gb|ACV51128.1| Ribonuclease H [Atopobium parvulum DSM 20469] Length = 257 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 82/194 (42%), Positives = 113/194 (58%), Gaps = 7/194 (3%) Query: 13 ELEAMVREK----NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +E M R + V G+DEVGRG++AGP+ V A+ L I +G+NDSKK++ KR Sbjct: 55 RVEEMYRFQKEFSGGGLVVGVDEVGRGSVAGPLTVCAVCLPDEPIIYGLNDSKKLTATKR 114 Query: 69 EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E L E+I A I I+ S Q ID+ + + DA+ AV+N + P LIDG P Sbjct: 115 EILAEQIQEVATAIGIAHISPQRIDEVGMAQCLRDAMLQAVKNTGIEPDCVLIDGN--PM 172 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + + ++KGD+ SIAAASI+AKVTRD LM ++YP Y GY +A+H + Sbjct: 173 HIHPKEKTLVKGDARIASIAAASIVAKVTRDALMVAYDEEYPGYYLAECKGYASAEHIKA 232 Query: 188 IKEKGPSCIHRLTF 201 I EKG S IHR +F Sbjct: 233 IGEKGLSPIHRASF 246 >gi|227495319|ref|ZP_03925635.1| possible ribonuclease H [Actinomyces coleocanis DSM 15436] gi|226831189|gb|EEH63572.1| possible ribonuclease H [Actinomyces coleocanis DSM 15436] Length = 228 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 70/216 (32%), Positives = 105/216 (48%), Gaps = 27/216 (12%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + + V GIDEVGRGALAGPV V A + P G+ DSK +S K+RE Sbjct: 16 EFERQLASQ-YGTVIGIDEVGRGALAGPVGVGACVAGLGEPPLGLTDSKALSLKQREHFV 74 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSI--- 125 A +++ AS++ +D+ I A A A+EN++ V+ L+DG Sbjct: 75 SLAQEWAYPWAVTYASNREVDELGIITALRLAGIRALENIKEAGVVADVVLLDGSHDWLT 134 Query: 126 -PEDLPC----------------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 P+DL +K D+ +AAAS++AKV RD+LM Sbjct: 135 PPQDLFSFDTAPLVERFQAVGAPPVVMKVKADASCSVVAAASVMAKVARDKLMEELPD-- 192 Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 P YG+ + GY +A H++ I+ G S HR +++ + Sbjct: 193 PGYGWAKNKGYGSAAHREAIRSLGVSQWHRTSWKLV 228 >gi|217033640|ref|ZP_03439068.1| hypothetical protein HP9810_899g76 [Helicobacter pylori 98-10] gi|216943986|gb|EEC23420.1| hypothetical protein HP9810_899g76 [Helicobacter pylori 98-10] Length = 204 Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats. Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 11/188 (5%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS--AII 81 GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L ++I S Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEKEIRSHDEVKF 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138 + S ID + AI +EN + + IDG + + + P +IK Sbjct: 64 WVVKKSANEIDNLGLGACLKLAIQEILENGRSLANGIKIDGNTAFGLNKRYP-NIQTIIK 122 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD IA AS++AK +DR MR H + +YG+D + GY T +H + + + G + HR Sbjct: 123 GDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPFHR 182 Query: 199 LTFRPLRN 206 +F L+N Sbjct: 183 HSF-TLKN 189 >gi|225677449|ref|ZP_03788413.1| ribonuclease HII [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590507|gb|EEH11770.1| ribonuclease HII [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 149 Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats. Identities = 61/148 (41%), Positives = 90/148 (60%), Gaps = 1/148 (0%) Query: 59 DSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 DSKK++ + R+ LYEKI S A I AS + I+ +NI +AT ++ A+ +L + Sbjct: 1 DSKKLTPQCRQVLYEKIISVAKFGIGMASVEEINSYNILQATKLSMKRALIDLDLELDYV 60 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 L+DG PE + Q +++ GD++S SIAAASI+AKVTRDRLM+ H K+P+Y + + G Sbjct: 61 LVDGNQPPE-VKWQVKSIVNGDNLSTSIAAASIVAKVTRDRLMQELHNKHPEYNWYKNKG 119 Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 Y T +H I G + HR F P+ Sbjct: 120 YGTKEHLNAIGLYGITEHHRKNFAPISR 147 >gi|300854482|ref|YP_003779466.1| putative ribonuclease HII [Clostridium ljungdahlii DSM 13528] gi|300434597|gb|ADK14364.1| predicted ribonuclease HII [Clostridium ljungdahlii DSM 13528] Length = 285 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 82/205 (40%), Positives = 116/205 (56%), Gaps = 11/205 (5%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKI 63 R +E + N AG+DEVGRG LAGP+ A+IL+ N + GI DSKK+ Sbjct: 85 RKMYEFDKSF--GNHIYTAGVDEVGRGPLAGPIAAGAVILNLNYNEDRELILGIKDSKKL 142 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 + K+R EL + I A+ +I+ ++ IDK I + + AVE L++ AL DG Sbjct: 143 TPKRRCELAKVIKERALAYNIAVINNIEIDKRGISWCNNEVLKRAVEGLKLPVTMALSDG 202 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 ++ ++L VIKGD+ S SIAAASIIAKV RD LM Y +Y F+ + GY T Sbjct: 203 YAV-KNLSTNNEFVIKGDTKSASIAAASIIAKVYRDSLMEEYSHLYTNYKFEQNSGYGTK 261 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 H + IK+ G IHR++F L+N+ Sbjct: 262 DHIESIKKYGICKIHRVSF--LKNI 284 >gi|289426375|ref|ZP_06428118.1| ribonuclease HII [Propionibacterium acnes SK187] gi|289153103|gb|EFD01821.1| ribonuclease HII [Propionibacterium acnes SK187] Length = 188 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 68/173 (39%), Positives = 89/173 (51%), Gaps = 4/173 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELY 72 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L+ Sbjct: 17 ERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREALF 76 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A+ +S D+ + +A + + AV L V P L DG + L Sbjct: 77 NVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGFPV-HGLTV 135 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA H Sbjct: 136 PDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALH 188 >gi|221194830|ref|ZP_03567887.1| putative ribonuclease HII [Atopobium rimae ATCC 49626] gi|221185734|gb|EEE18124.1| putative ribonuclease HII [Atopobium rimae ATCC 49626] Length = 263 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 70/181 (38%), Positives = 102/181 (56%), Gaps = 3/181 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 + G+DEVGRG +AGP+ V A++L + G+NDSKK+S +RE + +I A+ Sbjct: 74 GSGIIVGVDEVGRGPVAGPLTVGAVVLSDTPLIDGLNDSKKLSAARRETIAARIAKVALA 133 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I ++ ID+ + A A+ A+E V P LIDG P + + ++KGD Sbjct: 134 IGMAFIEPAEIDEIGMSAALRKAMEIAIEQTGVDPDCVLIDGN--PVHVHPREKTIVKGD 191 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + SIAAASI+AKV+RD LM +YP Y F + GY +A H + I + G + IHR T Sbjct: 192 AKIASIAAASIVAKVSRDALMVDYDAQYPAYHFAQNKGYASADHIKAIADYGLTPIHRTT 251 Query: 201 F 201 F Sbjct: 252 F 252 >gi|254424377|ref|ZP_05038095.1| ribonuclease HII [Synechococcus sp. PCC 7335] gi|196191866|gb|EDX86830.1| ribonuclease HII [Synechococcus sp. PCC 7335] Length = 199 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 72/178 (40%), Positives = 102/178 (57%), Gaps = 4/178 (2%) Query: 29 IDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISIS 84 +DEVGRGAL GPVV AA+I+ + I G+ DSK +S K+R +L +I S I Sbjct: 1 MDEVGRGALFGPVVAAAVIVPDSAIASLVSAGVTDSKALSAKRRTQLAVEIRSLTAFGIG 60 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 ++ ID+ NI +A+L A+ A+ L +P LIDG DLP + +++GD L Sbjct: 61 LSTVYEIDRINILQASLLAMRRAIFQLPWMPDKCLIDGNQRIFDLPIEQETIVRGDQSVL 120 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKV RD L+ + YP Y S+ GY +A H+ I G HR +F+ Sbjct: 121 AIAAASILAKVWRDDLVSRLDRHYPGYDLVSNKGYGSANHRAGIARYGICRQHRQSFK 178 >gi|317181045|dbj|BAJ58831.1| ribonuclease HII [Helicobacter pylori F32] Length = 204 Score = 190 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 63/187 (33%), Positives = 92/187 (49%), Gaps = 9/187 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII-- 81 GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L +KI + I Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEIKF 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139 + S ID + AI +EN + + IDG + +IKG Sbjct: 64 WVVKKSANEIDNLGLGACLKLAIQEILENDRSLANQIKIDGNTAFGLNKRYSNIQTIIKG 123 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D IA AS++AK +DR MR H + +YG+D + GY T +H + + + G + HR Sbjct: 124 DEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPFHRH 183 Query: 200 TFRPLRN 206 +F L+N Sbjct: 184 SF-TLKN 189 >gi|317178062|dbj|BAJ55851.1| ribonuclease HII [Helicobacter pylori F16] Length = 204 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 62/189 (32%), Positives = 93/189 (49%), Gaps = 9/189 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L +KI + + Sbjct: 2 ILGIDEAGRGCLAGSLFVAGVVCSEKTASEFLSMGLKDSKKLSPKKRFFLEDKIKTHGEV 61 Query: 82 --SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVI 137 + S ID + AI +EN + + IDG + +I Sbjct: 62 EFWVVKKSANEIDSLGLGACLKLAIQEILENGRSLANGIKIDGNTAFGLNKRHSNIQTII 121 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD IA AS++AK +DR MR H + +YG+D + GY T +H + + + G + H Sbjct: 122 KGDEKIAQIAMASVLAKAFKDREMRQLHALFEEYGWDKNCGYGTKQHIEAMIKLGATPFH 181 Query: 198 RLTFRPLRN 206 R +F L+N Sbjct: 182 RHSF-TLKN 189 >gi|149194772|ref|ZP_01871867.1| Ribonuclease H [Caminibacter mediatlanticus TB-2] gi|149135195|gb|EDM23676.1| Ribonuclease H [Caminibacter mediatlanticus TB-2] Length = 192 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 69/191 (36%), Positives = 101/191 (52%), Gaps = 13/191 (6%) Query: 26 VAGIDEVGRGALAGPVVVAAIIL--------DPNNIPFGINDSKKISHKKREELYEKITS 77 + GIDE GRG +AGP+V+A ++ N + DSKK+S KKREEL+E I Sbjct: 3 ICGIDEAGRGPIAGPLVMAGVMFLMENGKWKMSNEYFEKLTDSKKLSPKKREELFEVIKE 62 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 ++I I ++ IDK + A + + ++ + L DG + + Sbjct: 63 NSIYHIVFIDNETIDKKGLSFAIKFGLNEIIS--KINAKEYLFDGNTNFGIKKIKPIIK- 119 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD I+AASI+AKV+RDR M KKYP+Y F H GY T +H +IK+ G S IH Sbjct: 120 -GDLKIKEISAASILAKVSRDRFMIEIDKKYPEYNFKKHKGYITKEHINLIKKYGFSDIH 178 Query: 198 RLTFRPLRNLS 208 R +++ L+ L Sbjct: 179 RKSYK-LKALE 188 >gi|87301873|ref|ZP_01084707.1| ribonuclease HII [Synechococcus sp. WH 5701] gi|87283441|gb|EAQ75396.1| ribonuclease HII [Synechococcus sp. WH 5701] Length = 198 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 67/184 (36%), Positives = 98/184 (53%), Gaps = 5/184 (2%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS 78 +AG+DEVGRG L GPV AA++L G+ DSK + + R+ L IT+ Sbjct: 3 HRVLAGVDEVGRGCLFGPVFAAAVVLPAQAAAPLAAAGLTDSKALRPRHRQRLVPLITAQ 62 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A ++ AS ID I AT A+ A++ L P ++DG P + ++ Sbjct: 63 AEAWALGQASAADIDHIGIRAATEKAMVRALQRLPQAPALVVVDGVLPLRLWPGRQRTLV 122 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD L+IAAAS++AK RD L+ + +P YG + H GY TA H++ + GPS +H Sbjct: 123 HGDRRCLAIAAASVLAKQARDALIVRLAEGFPGYGLERHAGYGTALHREALIRLGPSRLH 182 Query: 198 RLTF 201 RL+F Sbjct: 183 RLSF 186 >gi|308062608|gb|ADO04496.1| ribonuclease HII [Helicobacter pylori Cuz20] Length = 204 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 62/190 (32%), Positives = 94/190 (49%), Gaps = 11/190 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG LAG + VA ++ + G+ DSKK+ KKR L +KI + I Sbjct: 2 ILGIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLGPKKRFFLEDKIKTHGEI 61 Query: 82 --SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136 + S ID + A+ +EN + IDG + + + P + Sbjct: 62 KFWVVKKSANEIDNLGLGVCLKLAVQEILENDHSLANQIKIDGNTAFGLNKRYP-NIQTI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK +DR MR H + +YG+D + GY T +H + + + G + Sbjct: 121 IKGDERIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRHSF-TLKN 189 >gi|312879567|ref|ZP_07739367.1| RNase HII [Aminomonas paucivorans DSM 12260] gi|310782858|gb|EFQ23256.1| RNase HII [Aminomonas paucivorans DSM 12260] Length = 189 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 72/184 (39%), Positives = 103/184 (55%), Gaps = 5/184 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS-S 78 VAG DE GRG LAGPVV AA +L P+ + G+ DSK ++ ++RE L+ + Sbjct: 1 MIVAGTDEAGRGPLAGPVVAAAAVLTPDQRRRLMQRGLGDSKALTPRRRESLFALMEELG 60 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + +AS ID NI A+L A+ A L P ++DG + L + Sbjct: 61 VLWRAQAASAARIDGTNILAASLWAMGRATVALDPPPDLVVVDGNARIPGLSLPQRCLPG 120 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD++ ++ AAS++AKV RDR M + YP YGF H GYPTA+H++ ++ GPS +HR Sbjct: 121 GDALVPAVMAASVVAKVLRDRAMESLDRLYPGYGFAKHKGYPTAEHRRALERLGPSPVHR 180 Query: 199 LTFR 202 TFR Sbjct: 181 ATFR 184 >gi|312194955|ref|YP_004015016.1| ribonuclease H [Frankia sp. EuI1c] gi|311226291|gb|ADP79146.1| Ribonuclease H [Frankia sp. EuI1c] Length = 240 Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 77/201 (38%), Positives = 115/201 (57%), Gaps = 4/201 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKRE 69 F E + + + PVAG+DE GRGA AGP+VVAA+ILDP + DSK ++ + RE Sbjct: 15 FGYERALARRGLGPVAGVDEAGRGACAGPLVVAAVILDPRRTGRLAELADSKLLTERIRE 74 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +YE + + A S+ ID+H +H + + AV L + P L+DG +P Sbjct: 75 RVYEDVLAVASAWSVVVIPAAEIDRHGLHVMNITGMRRAVARLAIHPGYVLVDGFPVP-G 133 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + + AV KGD ++ +AAAS++AKVTRDR+M ++Y +Y F H GY TA H + Sbjct: 134 IDTPSLAVRKGDRVAACVAAASVVAKVTRDRIMCQLDERYGEYDFAQHKGYVTAAHAAAL 193 Query: 189 KEKGPSCIHRLTFRPLRNLSV 209 GP HRL++ +++L V Sbjct: 194 ARHGPCEEHRLSYANVQSLIV 214 >gi|289523589|ref|ZP_06440443.1| ribonuclease HII [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503281|gb|EFD24445.1| ribonuclease HII [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 193 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 73/192 (38%), Positives = 100/192 (52%), Gaps = 21/192 (10%) Query: 24 WPVAGIDEVGRGALAGP------------VVVAAIILDPNNIPFGINDSKKISHKKREEL 71 V G+DE GRG LAGP + +L G+ DSK +S K+REE+ Sbjct: 1 MIVVGVDEAGRGPLAGPVVAAAVAATREKMS----LLKS----VGVTDSKALSSKRREEI 52 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + + I +A+ +ID+ NI +ATL A+ AV +L + P ++DG LP Sbjct: 53 FLLLRRYGFIYRAQAANPWFIDRANILQATLWAMEKAVSSLSLSPDIVIVDGNQKIPGLP 112 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+ K D L + AASI+AKV RDR+M K YP YGF H GYPT +H+ + Sbjct: 113 FPQKALPKADKNVLVVGAASIVAKVIRDRVMCAYDKLYPGYGFAVHKGYPTKEHRIALAL 172 Query: 191 KGPSCIHRLTFR 202 G S IHR TF+ Sbjct: 173 MGASPIHRKTFK 184 >gi|313141283|ref|ZP_07803476.1| ribonuclease [Helicobacter canadensis MIT 98-5491] gi|313130314|gb|EFR47931.1| ribonuclease [Helicobacter canadensis MIT 98-5491] Length = 194 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 59/185 (31%), Positives = 87/185 (47%), Gaps = 9/185 (4%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI---PFGINDSKKISHKKREELYEKITS 77 N + GIDE GRG + G + V +IL + + DSKK+S K R+ L +I Sbjct: 2 HNPLEICGIDEAGRGCIGGSLFVCGVILGKSFPQSLLSQLQDSKKLSPKVRDTLAPQIKQ 61 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA-FAV 136 A + + Q ID + +A+ + L+ L DG + Q+ + Sbjct: 62 YAQFHLVKKTAQEIDLKGLSLCLKEALQEILTYLKSA--HYLFDGNC---NFKIQSLQTL 116 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGDS +I+AASI+AK +D+ YP YGF SH GY T H + I + G Sbjct: 117 IKGDSKVYAISAASILAKNAKDKESMELDLIYPQYGFKSHKGYGTKAHIEAISKFGYCKE 176 Query: 197 HRLTF 201 HR ++ Sbjct: 177 HRKSY 181 >gi|224417741|ref|ZP_03655747.1| ribonuclease HII RNase HII [Helicobacter canadensis MIT 98-5491] gi|253827085|ref|ZP_04869970.1| ribonuclease HII [Helicobacter canadensis MIT 98-5491] gi|253510491|gb|EES89150.1| ribonuclease HII [Helicobacter canadensis MIT 98-5491] Length = 204 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 59/185 (31%), Positives = 87/185 (47%), Gaps = 9/185 (4%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI---PFGINDSKKISHKKREELYEKITS 77 N + GIDE GRG + G + V +IL + + DSKK+S K R+ L +I Sbjct: 12 HNPLEICGIDEAGRGCIGGSLFVCGVILGKSFPQSLLSQLQDSKKLSPKVRDTLAPQIKQ 71 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA-FAV 136 A + + Q ID + +A+ + L+ L DG + Q+ + Sbjct: 72 YAQFHLVKKTAQEIDLKGLSLCLKEALQEILTYLKSA--HYLFDGNC---NFKIQSLQTL 126 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGDS +I+AASI+AK +D+ YP YGF SH GY T H + I + G Sbjct: 127 IKGDSKVYAISAASILAKNAKDKESMELDLIYPQYGFKSHKGYGTKAHIEAISKFGYCKE 186 Query: 197 HRLTF 201 HR ++ Sbjct: 187 HRKSY 191 >gi|188528111|ref|YP_001910798.1| ribonuclease HII [Helicobacter pylori Shi470] gi|238691950|sp|B2UV86|RNH2_HELPS RecName: Full=Ribonuclease HII; Short=RNase HII gi|188144351|gb|ACD48768.1| ribonuclease HII [Helicobacter pylori Shi470] Length = 204 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 62/190 (32%), Positives = 95/190 (50%), Gaps = 11/190 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG LAG + VA ++ + G+ DSKK+ KKR L +KI + I Sbjct: 2 ILGIDEAGRGCLAGSLFVAGVVCGEKTALEFLEMGLKDSKKLGPKKRFFLEDKIKTHGEI 61 Query: 82 --SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136 + S ID + A+ +EN + + IDG + + + P + Sbjct: 62 KFWVVKKSANEIDNLGLGACLKLAVQEILENGRSLANQIKIDGNTAFGLNKRYP-NIQTI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK +DR MR H + +YG+D + GY T +H + + + G + Sbjct: 121 IKGDERIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRHSF-TLKN 189 >gi|332674122|gb|AEE70939.1| ribonuclease HII [Helicobacter pylori 83] Length = 204 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 62/187 (33%), Positives = 92/187 (49%), Gaps = 9/187 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII-- 81 GIDE GRG LAG + VA ++ + + G+ DSKK+S KKR L +KI + I Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCNEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEIKF 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139 + S ID + AI +EN + + IDG + +IKG Sbjct: 64 WVVKKSANEIDNLGLGVCLKLAIQEILENGRSLTNKIKIDGNTAFGLNKRYSNIQTIIKG 123 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D IA AS++AK +DR M H + +YG+D + GY T +H + + + G + HR Sbjct: 124 DEKIAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAMIKLGATPFHRH 183 Query: 200 TFRPLRN 206 +F L+N Sbjct: 184 SF-TLKN 189 >gi|294867798|ref|XP_002765242.1| ribonuclease hii, putative [Perkinsus marinus ATCC 50983] gi|239865237|gb|EEQ97959.1| ribonuclease hii, putative [Perkinsus marinus ATCC 50983] Length = 630 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 84/201 (41%), Positives = 113/201 (56%), Gaps = 16/201 (7%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKK-REELYEKITSS 78 K + V G+DE GRG L GPVV AA+ ++ + IP+GI DSK IS+++ R+ +YE++T++ Sbjct: 5 KAVDIVIGVDEAGRGPLCGPVVAAAVYINQDTYIPYGICDSKTISNEEYRDMMYEQLTNN 64 Query: 79 --AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR------SALIDGRSIPE--- 127 S+ ++ ID NI +AT A AV L LIDG +P Sbjct: 65 KGVKWSVGIVDNKVIDTINILQATFTAKTEAVLKLTKDGEGRKSKYHVLIDGNRVPPQLL 124 Query: 128 ---DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 ++ Q ++KGDS IAAASIIAKVTRDR+M H P Y H GYPT H Sbjct: 125 NNNNINLQCTPIVKGDSKEYIIAAASIIAKVTRDRIMHHIHNNIPQYNVSQHKGYPTTAH 184 Query: 185 QQVIKEKGPSCIHRLTFRPLR 205 ++K GPS HRLTF PL+ Sbjct: 185 IALLKRLGPSKYHRLTFAPLK 205 >gi|308177303|ref|YP_003916709.1| ribonuclease HII [Arthrobacter arilaitensis Re117] gi|307744766|emb|CBT75738.1| ribonuclease HII [Arthrobacter arilaitensis Re117] Length = 241 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 66/221 (29%), Positives = 103/221 (46%), Gaps = 22/221 (9%) Query: 3 CNSIPERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GIND 59 +S + E E + K + +A +DEVGRGALAGP+ V ++D + + D Sbjct: 2 ADSKSKATTLEHERALAAKHGVRYIAAVDEVGRGALAGPITVGMTVIDIQQVTEFPALRD 61 Query: 60 SKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 SK +S R L + + A+ + AS ID+ + A A A+ + P +A Sbjct: 62 SKLLSPDTRMALVDPVRQWAVGYGVGHASATEIDELGVTGALRLAGSRAMVQCAIQPEAA 121 Query: 119 LIDGR------------------SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160 L+DG P L ++KGD +IA ASI+AKV RD + Sbjct: 122 LLDGSYDWLTAPEPDLFDILADDREPVGLRIPVATIVKGDMTCQAIAGASILAKVERDVI 181 Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 M ++PD+G++ + GY TA H+ I +GP HR ++ Sbjct: 182 MVGLATEHPDFGWEINKGYATAAHRAAIVAQGPCDYHRKSW 222 >gi|256379913|ref|YP_003103573.1| ribonuclease H [Actinosynnema mirum DSM 43827] gi|255924216|gb|ACU39727.1| Ribonuclease H [Actinosynnema mirum DSM 43827] Length = 258 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 70/197 (35%), Positives = 110/197 (55%), Gaps = 4/197 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKR 68 + +A + + + PVAG+DE GRGA AGP+VVAA +L + G+ DSK ++ R Sbjct: 16 TWAFQAALDRRGLGPVAGVDEAGRGACAGPLVVAAAVLRTGDAARFAGLTDSKLLTAAAR 75 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + +++ + A+ ++ +D +H A ++ + AV L P L DG +P Sbjct: 76 DRMHDLVLERALDHAVVVVPADEVDAIGVHVANVEGMRRAVARLGTHPGYVLTDGFPVP- 134 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L ++KGD ++ +AAAS++AKVTRDR+M H++ P YGFD H GY TA H Sbjct: 135 GLTAPNAPLVKGDRVAACVAAASVLAKVTRDRIMAELHEELPVYGFDVHKGYGTAAHTAA 194 Query: 188 IKEKGPSCIHRLTFRPL 204 + E GPS HR ++ + Sbjct: 195 LLEHGPSGQHRWSYANV 211 >gi|283953657|ref|ZP_06371188.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 414] gi|283794698|gb|EFC33436.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 414] Length = 198 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 68/197 (34%), Positives = 109/197 (55%), Gaps = 8/197 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F+ + ++ E ++ + GIDE GRGALAGP+++AA L N G+ DSKK+S KKR Sbjct: 9 KTLFDTKELLNEFDINLI-GIDEAGRGALAGPMMMAACKL--NKQLDGLCDSKKLSEKKR 65 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 EELYE I ++ I + S + ID + + ++ + L DG + + Sbjct: 66 EELYEIIIKNSSYLILAFSSEQIDALGLSTCLKTGLKLIKKHFKTENNF-LYDGNT---N 121 Query: 129 LPCQ-AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L IK D+ L ++AASI+AKV++DR+M K +P Y F+ + Y T H+++ Sbjct: 122 LGINGIKTQIKADASILQVSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKEL 181 Query: 188 IKEKGPSCIHRLTFRPL 204 I + G +HR +F+ L Sbjct: 182 IAKFGICKLHRKSFKLL 198 >gi|303232810|ref|ZP_07319495.1| ribonuclease HII [Atopobium vaginae PB189-T1-4] gi|302481296|gb|EFL44371.1| ribonuclease HII [Atopobium vaginae PB189-T1-4] Length = 271 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 71/194 (36%), Positives = 106/194 (54%), Gaps = 5/194 (2%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 R + L+ + V G+DEVGRG LAGP+ V A++L+ +G+NDSK++S + R Sbjct: 76 RAMYALQRSMAYGG--AVIGVDEVGRGPLAGPLSVGAVVLNDEPCIWGLNDSKQLSSRTR 133 Query: 69 EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 EL +I A +++ ID+ I A +A+ A+E + + P + LIDG P Sbjct: 134 SELAARIRKEARAVAVVHIPPAVIDEKGISCALKEAMRTAIERIDIAPTAVLIDGN--PV 191 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + ++KGD +IAAASI+AKV RD M +YP Y F + GY +++H Sbjct: 192 HVHPLEQTIVKGDCKIAAIAAASIVAKVERDAYMSSISDQYPQYHFAQNKGYGSSEHIHA 251 Query: 188 IKEKGPSCIHRLTF 201 IK G S IHR +F Sbjct: 252 IKTYGLSAIHRKSF 265 >gi|310286901|ref|YP_003938159.1| Ribonuclease HII [Bifidobacterium bifidum S17] gi|311063802|ref|YP_003970527.1| ribonuclease HII RnhB [Bifidobacterium bifidum PRL2010] gi|309250837|gb|ADO52585.1| Ribonuclease HII [Bifidobacterium bifidum S17] gi|310866121|gb|ADP35490.1| RnhB Ribonuclease HII [Bifidobacterium bifidum PRL2010] Length = 233 Score = 188 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 110/229 (48%), Gaps = 32/229 (13%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII-----LDPNNIPFGIND 59 ++ E P ++E + + V G DEVGRGALAGPV+V A L +P G+ D Sbjct: 2 AMIEHPTLDMERQLAAQGCDVVIGCDEVGRGALAGPVMVGAAAMWSRDLAAAQVPAGVAD 61 Query: 60 SKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR-- 116 SK ++ +RE + +++ S A ++ AS+ ID+ I A A A+ +++ Sbjct: 62 SKLLTEHRREGIVDELRSWCAAYAVGQASNAEIDEWGISHALGIAALRALNDVERQLGMD 121 Query: 117 ---------SALIDGRSIP------------EDLPCQAFAVIKGDSISLSIAAASIIAKV 155 ++DG + +P Q +KGD +++ A++IAKV Sbjct: 122 GPAGSGRRVDVILDGPNDYITKTMNTFDAPALPIPVQVSCKVKGDRHCATVSCAAVIAKV 181 Query: 156 TRDRLMRIAHK---KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 TRD LM + +Y YG+ + GY +A H+ I G + +HR+T+ Sbjct: 182 TRDHLMVDIAQGNPRYAPYGWAHNKGYGSAAHRDAIARLGVTPLHRVTW 230 >gi|261838642|gb|ACX98408.1| ribonuclease HII [Helicobacter pylori 51] Length = 204 Score = 188 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 63/187 (33%), Positives = 92/187 (49%), Gaps = 9/187 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS--AII 81 GIDE GRG LAG + VA ++ + + G+ DSKK+S KKR L +KI + Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCNEKTALEFLSMGLKDSKKLSPKKRFFLEDKIKTHGEVKF 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139 + S ID + AI +EN + + IDG + +IKG Sbjct: 64 WVVKKSANEIDSLGLGVCLKLAIQEILENGRSLANKIKIDGNTAFGLNKRYSNIETIIKG 123 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D IA AS+IAK +DR MR H + +YG+D + GY T +H + + + G + HR Sbjct: 124 DEKIAQIAMASVIAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPFHRH 183 Query: 200 TFRPLRN 206 +F L+N Sbjct: 184 SF-TLKN 189 >gi|157414331|ref|YP_001481587.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 81116] gi|172046982|sp|A8FJH3|RNH2_CAMJ8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|157385295|gb|ABV51610.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 81116] gi|315931297|gb|EFV10266.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 327] Length = 191 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 68/197 (34%), Positives = 109/197 (55%), Gaps = 8/197 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F+ + ++ E ++ + GIDE GRGALAGP+++AA L N G+ DSKK+S KKR Sbjct: 2 KTLFDTKELLNEFDINLI-GIDEAGRGALAGPMMMAACKL--NKKLDGLCDSKKLSEKKR 58 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 EELYE I ++ I + S + ID + + ++ + L DG + + Sbjct: 59 EELYEIIIKNSNYLILAFSSEQIDALGLSTCLKTGLKLIKKHFKTENNF-LYDGNT---N 114 Query: 129 LPCQ-AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L IK D+ L ++AASI+AKV++DR+M K +P Y F+ + Y T H+++ Sbjct: 115 LGINGIKTQIKADASILQVSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKEL 174 Query: 188 IKEKGPSCIHRLTFRPL 204 I + G +HR +F+ L Sbjct: 175 IAKFGICKLHRKSFKLL 191 >gi|160947174|ref|ZP_02094341.1| hypothetical protein PEPMIC_01107 [Parvimonas micra ATCC 33270] gi|158446308|gb|EDP23303.1| hypothetical protein PEPMIC_01107 [Parvimonas micra ATCC 33270] Length = 210 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 77/196 (39%), Positives = 111/196 (56%), Gaps = 11/196 (5%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 ELE + ++ N+ + G+DEVGRG LAGPVV AII+ ++ G+ DSKK+S KKR LY Sbjct: 6 ELENIYKKYNL--IIGVDEVGRGCLAGPVVSCAIIMKKDSKIEGVTDSKKLSKKKRLALY 63 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRSALIDGRSI 125 +KI + I + ID+ NI +A+ A+ A+ N++ V + D + Sbjct: 64 DKILEECVGYGIGIVDNVKIDEINIKQASRFAMKIAISNIKDLDGNKVSGDFLITDAEKV 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 D+P +I GD +S ++ ASIIAK RD + KKYP+Y F +VGY T H Sbjct: 124 DVDIP--QINLIHGDELSYVVSCASIIAKEYRDSMFVEYEKKYPNYNFIKNVGYGTKAHY 181 Query: 186 QVIKEKGPSCIHRLTF 201 + I E G + IHR+TF Sbjct: 182 KGIDEFGVTPIHRVTF 197 >gi|282862315|ref|ZP_06271377.1| Ribonuclease H [Streptomyces sp. ACTE] gi|282562654|gb|EFB68194.1| Ribonuclease H [Streptomyces sp. ACTE] Length = 236 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 76/205 (37%), Positives = 109/205 (53%), Gaps = 5/205 (2%) Query: 8 ERPHFELEAMVRE-KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R VAG+DEVGRGA AGPV V A + P G+ DSK IS K Sbjct: 4 EPPTHTVERSLRATSGAKTVAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLISPK 63 Query: 67 KREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R EL + S + AS + ID + A A A++ L V P + ++DG+ Sbjct: 64 RRAELAPVLESWVTAFGLGHASPEEIDDLGMTAALRLAAVRALDALPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK---KYPDYGFDSHVGYPTA 182 P + VIKGD +++AAAS+IAKV RD +M +Y D+ F ++ GYP+ Sbjct: 124 YLGDPWKVRTVIKGDQSCIAVAAASVIAKVRRDTMMAELGADSDRYADFAFGANAGYPSP 183 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 H+ ++E GP+ HRL++ L L Sbjct: 184 VHRAALEEWGPTPHHRLSWSYLDAL 208 >gi|29828995|ref|NP_823629.1| ribonuclease HII [Streptomyces avermitilis MA-4680] gi|39932356|sp|Q82KF0|RNH2_STRAW RecName: Full=Ribonuclease HII; Short=RNase HII gi|29606100|dbj|BAC70164.1| putative ribonuclease HII [Streptomyces avermitilis MA-4680] Length = 233 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 74/202 (36%), Positives = 112/202 (55%), Gaps = 2/202 (0%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R +AG+DEVGRGA AGPV V A I P G+ DSK ++ K Sbjct: 4 EPPTHTVERSLRATTGAKVIAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLLTVK 63 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R L E++ ++ AS + ID + A A A+E L V P + ++DG+ Sbjct: 64 RRTVLAEELRKWVTSYALGHASPEEIDALGMTAALRLAAVRALEALPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + VIKGD +++AAAS+IAKV RD++M ++ D+GF ++ GYP+ H+ Sbjct: 124 YLGSPWKVRTVIKGDQSCVAVAAASVIAKVQRDKMMAELGIEHADFGFAANAGYPSPVHK 183 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 + E+GP+ HRL++ L L Sbjct: 184 AALAERGPTPYHRLSWAYLDAL 205 >gi|256832223|ref|YP_003160950.1| Ribonuclease H [Jonesia denitrificans DSM 20603] gi|256685754|gb|ACV08647.1| Ribonuclease H [Jonesia denitrificans DSM 20603] Length = 303 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 67/218 (30%), Positives = 102/218 (46%), Gaps = 26/218 (11%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKR 68 E + ++ VAG+DEVGRGALAGPV V ++DP P G+ DSK++SH+ R Sbjct: 72 DLTHERSLFDRGARLVAGVDEVGRGALAGPVAVGVCVVDPTTQLPPVGLTDSKELSHEAR 131 Query: 69 EELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVI---PRSALIDGRS 124 L I A+ S + A+ + ID+ I A A A+ + + L+DG Sbjct: 132 ALLVPMIQGWAVASAVGLATPEEIDECGIVGALRLAGQRALGEIMQRLGPVDTVLLDGSH 191 Query: 125 IPEDLPCQ--------------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIA 164 P Q +K D S+A ASI+AK RD +MR Sbjct: 192 NWLSEPVQDLFDAVTSDQQTIDGYEEPRVVTRVKADLACASVAGASILAKEHRDAIMREL 251 Query: 165 HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +P YG+ ++ GY ++ H + +GP+ HR+++R Sbjct: 252 DHDFPHYGWVTNKGYASSGHTYALTTRGPTPHHRMSWR 289 >gi|291436842|ref|ZP_06576232.1| ribonuclease HII [Streptomyces ghanaensis ATCC 14672] gi|291339737|gb|EFE66693.1| ribonuclease HII [Streptomyces ghanaensis ATCC 14672] Length = 233 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 75/202 (37%), Positives = 111/202 (54%), Gaps = 2/202 (0%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R +AG+DEVGRGA AGPV V A I P G+ DSK ++ K Sbjct: 4 EPPTHTVERSLRATTGAKVIAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLLTLK 63 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R EL E + S ++ AS + ID + A A A+E L V P + ++DG+ Sbjct: 64 RRTELAETLRSWVTSYALGHASPEEIDVLGMTAALRLAAVRALEALPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + VIKGD +++AAAS+IAKV RD++M + D+GF + GYP+ H+ Sbjct: 124 YLGTPWKVRTVIKGDQSCVAVAAASVIAKVQRDKMMAELGVDHADFGFADNAGYPSPVHR 183 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 ++ +GP+ HRL++ L L Sbjct: 184 AALEVRGPTPHHRLSWAYLDAL 205 >gi|268680590|ref|YP_003305021.1| ribonuclease H [Sulfurospirillum deleyianum DSM 6946] gi|268618621|gb|ACZ12986.1| Ribonuclease H [Sulfurospirillum deleyianum DSM 6946] Length = 182 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 65/183 (35%), Positives = 99/183 (54%), Gaps = 7/183 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + GIDE GRG LAGP+VVA +L G+ DSK++S K+RE L+E++ ++A I Sbjct: 2 LCGIDEAGRGCLAGPLVVAGAVLKE--PVKGLADSKQLSEKQREILFERLQNAAEFKIVF 59 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 H+ +D + AI + L+DG ++K D+ Sbjct: 60 CDHEMVDTKGLSACLKYAIETIKAHFCE--HEILMDGNCTFGVSGIS--TMVKADAKVAE 115 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 ++AASI+AKV+RDR M YP+Y F+ H GY +A H ++I++ G IHR +F+ L+ Sbjct: 116 VSAASILAKVSRDRYMCDIAPSYPEYAFEKHKGYGSALHVKMIQQFGYCDIHRKSFK-LK 174 Query: 206 NLS 208 LS Sbjct: 175 ALS 177 >gi|239928517|ref|ZP_04685470.1| ribonuclease HII [Streptomyces ghanaensis ATCC 14672] Length = 236 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 76/208 (36%), Positives = 114/208 (54%), Gaps = 3/208 (1%) Query: 3 CNSIP-ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 ++P E P +E +R +AG+DEVGRGA AGPV V A I P G+ DS Sbjct: 1 MGAMPYEPPTHTVERSLRATTGAKVIAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDS 60 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 K ++ K+R EL E + S ++ AS + ID + A A A+E L V P + + Sbjct: 61 KLLTLKRRTELAETLRSWVTSYALGHASPEEIDVLGMTAALRLAAVRALEALPVRPDAVI 120 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 +DG+ P + VIKGD +++AAAS+IAKV RD++M + D+GF + GY Sbjct: 121 LDGKHDYLGTPWKVRTVIKGDQSCVAVAAASVIAKVQRDKMMAELGVDHADFGFADNAGY 180 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 P+ H+ ++ +GP+ HRL++ L L Sbjct: 181 PSPVHRAALEVRGPTPHHRLSWAYLDAL 208 >gi|307720133|ref|YP_003891273.1| Ribonuclease H [Sulfurimonas autotrophica DSM 16294] gi|306978226|gb|ADN08261.1| Ribonuclease H [Sulfurimonas autotrophica DSM 16294] Length = 182 Score = 187 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 71/187 (37%), Positives = 100/187 (53%), Gaps = 9/187 (4%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M + GIDE GRG LAG +V+A IL + G+NDSKK++ KKRE LYE I +A Sbjct: 1 MGVLCGIDEAGRGPLAGDLVMAGCIL--HVSVDGLNDSKKLTAKKREALYELIVENASYH 58 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA-VIKGDS 141 I S ID + I + + NL+ L DG + + A +++ D Sbjct: 59 IVKFSAHDIDNNGISACLKKGLIDILNNLK--ADKYLFDGN---QTYGVKNLATMVQADR 113 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++AASI+AKVT D + A KKYP+Y F+ H GY T H +IK+ G IHR T+ Sbjct: 114 KIAEVSAASILAKVTHDVDILEAAKKYPEYQFEKHKGYGTKLHVAMIKKYGYCEIHRKTY 173 Query: 202 RPLRNLS 208 + ++ L Sbjct: 174 K-IKALE 179 >gi|224282458|ref|ZP_03645780.1| ribonuclease HII [Bifidobacterium bifidum NCIMB 41171] gi|313139607|ref|ZP_07801800.1| ribonuclease HII [Bifidobacterium bifidum NCIMB 41171] gi|313132117|gb|EFR49734.1| ribonuclease HII [Bifidobacterium bifidum NCIMB 41171] Length = 233 Score = 187 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 110/229 (48%), Gaps = 32/229 (13%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII-----LDPNNIPFGIND 59 ++ E P ++E + + V G DEVGRGALAGPV+V A L +P G+ D Sbjct: 2 AMIEHPTLDMERQLAAQGCDVVIGCDEVGRGALAGPVMVGAAAMWSRDLAAAQVPAGVAD 61 Query: 60 SKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR-- 116 SK ++ +RE + +++ S A ++ AS+ ID+ I A A A+ +++ Sbjct: 62 SKLLTEHRREGIVDELRSWCAAYAVGQASNAEIDEWGISHALGIAALRALNDVERQLGMD 121 Query: 117 ---------SALIDGRSIP------------EDLPCQAFAVIKGDSISLSIAAASIIAKV 155 ++DG + +P Q +KGD +++ A++IAKV Sbjct: 122 GPAGSGRRVDVILDGPNDYITKTMNTFDAPALPIPVQVSCKVKGDRHCAAVSCAAVIAKV 181 Query: 156 TRDRLMRIAHK---KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 TRD LM + +Y YG+ + GY +A H+ I G + +HR+T+ Sbjct: 182 TRDHLMVDIAQGNPRYAPYGWAHNKGYGSAAHRDAIARLGVTPLHRVTW 230 >gi|253315602|ref|ZP_04838815.1| ribonuclease HII [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 232 Score = 187 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 75/169 (44%), Positives = 104/169 (61%), Gaps = 4/169 (2%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E +FE E +++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ K Sbjct: 57 EMTYFENE-ILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPITK 115 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ Sbjct: 116 RLELNEALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLIDAMTLD 175 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 LP ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ Sbjct: 176 NALP--QVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEK 222 >gi|320008134|gb|ADW02984.1| Ribonuclease H [Streptomyces flavogriseus ATCC 33331] Length = 236 Score = 187 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 74/205 (36%), Positives = 108/205 (52%), Gaps = 5/205 (2%) Query: 8 ERPHFELEAMVRE-KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R VAG+DEVGRGA AGPV V A + P G+ DSK ++ K Sbjct: 4 EPPTHTVERSLRATSGARTVAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLLTPK 63 Query: 67 KREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R EL + + AS Q ID + A A A++ L V P + ++DG+ Sbjct: 64 RRAELAPTLEKWVTAYGLGHASPQEIDDVGMTAALRLAATRALDMLPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK---KYPDYGFDSHVGYPTA 182 P VIKGD +++AAAS+IAKV RD +M +Y D+ F ++ GYP+ Sbjct: 124 YLGPPWNVRTVIKGDQSCIAVAAASVIAKVHRDTMMAELGAESGQYADFAFGANAGYPSP 183 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 H+ ++E+GP+ HRL++ L L Sbjct: 184 VHRAALEERGPTPHHRLSWAYLDAL 208 >gi|229815421|ref|ZP_04445753.1| hypothetical protein COLINT_02469 [Collinsella intestinalis DSM 13280] gi|229808954|gb|EEP44724.1| hypothetical protein COLINT_02469 [Collinsella intestinalis DSM 13280] Length = 262 Score = 187 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 65/169 (38%), Positives = 95/169 (56%), Gaps = 3/169 (1%) Query: 34 RGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSASHQYID 92 RG++AGP+ V A+ L +GINDSK+++ KRE L +I A + I + ID Sbjct: 85 RGSVAGPLTVCAVSLPSEPRIWGINDSKQLTPAKREMLAVRIAEVATAVGICHIAPSRID 144 Query: 93 KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASII 152 + + +A +A+ AV + + P L+DG P V+KGD+ IAAASI+ Sbjct: 145 EIGMARALREAVAGAVADTGLEPDCVLMDGN--PLGAVPNERDVVKGDAKVACIAAASIV 202 Query: 153 AKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 AKVTRD LM +YP+Y GY +A+H Q IK+ G S +HR++F Sbjct: 203 AKVTRDELMVELDTEYPEYHLAQSKGYASAEHIQAIKDHGLSPVHRVSF 251 >gi|315587212|gb|ADU41593.1| ribonuclease H [Helicobacter pylori 35A] Length = 204 Score = 187 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 62/187 (33%), Positives = 92/187 (49%), Gaps = 9/187 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII-- 81 GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L KI + + Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEGKIKTHGEVEF 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139 + S ID+ + AI +EN + + IDG + +IKG Sbjct: 64 WVVKKSANEIDRLGLGACLKLAIQEILENGRSLTNGIKIDGNTAFGLNKRYSNIQTIIKG 123 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D IA AS++AK +DR MR H + +YG+D + GY T +H + + + G + HR Sbjct: 124 DEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPFHRH 183 Query: 200 TFRPLRN 206 +F L+N Sbjct: 184 SF-TLKN 189 >gi|305432558|ref|ZP_07401719.1| ribonuclease HII [Campylobacter coli JV20] gi|304444269|gb|EFM36921.1| ribonuclease HII [Campylobacter coli JV20] Length = 202 Score = 187 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 63/179 (35%), Positives = 99/179 (55%), Gaps = 5/179 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + GIDE GRGALAGP+++AA L + G+ DSKK+S K+REELYE I ++ I + Sbjct: 29 LIGIDEAGRGALAGPMMMAACKLHKD--LEGLCDSKKLSEKRREELYEIIIKNSNYLILA 86 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ + L ++ + L DG + + IK D+ Sbjct: 87 FSSEKIDEIGLSAC-LKMGLTLIKKHFKTENNFLYDGNTNLGISGIKTQ--IKADANIKQ 143 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 ++AASI+AKV++DR+M K +P Y F+ + Y T H+++I + G +HR +F+ L Sbjct: 144 VSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKELIAKFGICKLHRKSFKLL 202 >gi|302554616|ref|ZP_07306958.1| ribonuclease HII [Streptomyces viridochromogenes DSM 40736] gi|302472234|gb|EFL35327.1| ribonuclease HII [Streptomyces viridochromogenes DSM 40736] Length = 233 Score = 187 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 75/202 (37%), Positives = 112/202 (55%), Gaps = 2/202 (0%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R VAG+DEVGRGA AGPV V A I P G+ DSK ++ K Sbjct: 4 EPPTHTVERSLRATTGAKIVAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLLTIK 63 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R EL E + + ++ AS + ID+ + A A A++ L V P + ++DG+ Sbjct: 64 RRTELAEVLRTWVTSFALGHASPEEIDELGMTAALRLAACRALDALPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + VIKGD +++AAAS+IAKV RD++M + D+GF + GYP+ H+ Sbjct: 124 YLGAPWRVRTVIKGDQSCVAVAAASVIAKVQRDKMMAELGIDHADFGFADNAGYPSPVHK 183 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 + E+GP+ HRL++ L L Sbjct: 184 AALAERGPTPYHRLSWAYLDAL 205 >gi|37521076|ref|NP_924453.1| ribonuclease H [Gloeobacter violaceus PCC 7421] gi|35212072|dbj|BAC89448.1| ribonuclease H [Gloeobacter violaceus PCC 7421] Length = 198 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 72/187 (38%), Positives = 106/187 (56%), Gaps = 18/187 (9%) Query: 29 IDEVGRGALAGPVVVAAII------LDPNNIPF---GINDSKKISHKKREELYEKITSSA 79 +DEVGRGALAG + L P+ GI DSK + +RE L+E+I + A Sbjct: 1 MDEVGRGALAG------CVVAAAVVLPPDIPLAALAGITDSKLLDRPRREALHERILALA 54 Query: 80 -IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + I SAS ID+ NI +AT A+ A+ + + L+DG + E L A++ Sbjct: 55 SAVGIGSASVGEIDRLNILRATALAMGRALHRVAPV-EHVLVDGLPVAE-LGITQTAIVG 112 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD SLSIAAASI+AKVTRDR M +++ +G+ ++ GY TA H++ + G + +HR Sbjct: 113 GDRTSLSIAAASIVAKVTRDRWMERLDRRFAGFGWATNAGYGTAFHREALARLGVTPLHR 172 Query: 199 LTFRPLR 205 +F P+R Sbjct: 173 RSFAPVR 179 >gi|207092749|ref|ZP_03240536.1| ribonuclease HII [Helicobacter pylori HPKX_438_AG0C1] Length = 204 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 65/188 (34%), Positives = 94/188 (50%), Gaps = 11/188 (5%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS--AII 81 GIDE GRG LAG + VA + D + G+ DSKK+S KKR L +KI + Sbjct: 4 GIDEAGRGCLAGSLFVAGVACDEKTALEFLKMGLKDSKKLSQKKRFFLEDKIKTHGEVKF 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138 + S + ID + AI +EN + IDG + + + P +IK Sbjct: 64 FVVKKSAEAIDSLGLGACLRLAIEEILENGCSLANEIKIDGNTAFGLNKRYPHIQ-TIIK 122 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD IA AS++AK +DR MR H + +YG+D + GY T +H + I + G + HR Sbjct: 123 GDETIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHR 182 Query: 199 LTFRPLRN 206 +F L+N Sbjct: 183 HSF-TLKN 189 >gi|311113471|ref|YP_003984693.1| ribonuclease HII [Rothia dentocariosa ATCC 17931] gi|310944965|gb|ADP41259.1| ribonuclease HII [Rothia dentocariosa ATCC 17931] Length = 264 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 101/232 (43%), Gaps = 40/232 (17%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKR 68 + E E + +AG+DEVGRGALAGPV V +LD N I G+ DSK ++ K+R Sbjct: 5 NLEHEQKLFTAGYRLIAGLDEVGRGALAGPVSVGVAVLDQQNQQILEGLTDSKALTPKRR 64 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI---PRSALIDGRSI 125 E L +I +I + ID + A A A+ +L P + L+DG+ Sbjct: 65 EALIPRIQKWCSYAIGHTTPAEIDVLGMTYALRLAAQRALADLAHRGLYPEAVLLDGKHD 124 Query: 126 -----------------------------------PEDLPCQAFAVIKGDSISLSIAAAS 150 + +IKGD SIAAAS Sbjct: 125 WLSPQPANLLDSIDPVYRRYEELLHRIWNGANSAAEKGWSGPVTTIIKGDYQCASIAAAS 184 Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 ++AKV RD M + P YG+ + GY + H+Q I E GPS HRL++ Sbjct: 185 VVAKVDRDAFMESLSAENPHYGWAKNKGYGSVAHRQAISEYGPSIYHRLSWS 236 >gi|261337969|ref|ZP_05965853.1| ribonuclease HII [Bifidobacterium gallicum DSM 20093] gi|270277466|gb|EFA23320.1| ribonuclease HII [Bifidobacterium gallicum DSM 20093] Length = 243 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 115/236 (48%), Gaps = 43/236 (18%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII----LDPNNIPFGINDSKKIS 64 P + E + ++ + G DEVGRGALAGPV+V AA I L ++P + DSK ++ Sbjct: 6 PTLDREQELADQGFDLIVGFDEVGRGALAGPVMVGAAAIWAADLPQLHVPDHVADSKMLT 65 Query: 65 HKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQV---------- 113 ++RE +YE + + A ++ AS+Q ID I A A A+ L+ Sbjct: 66 ERRREAIYEDLEAWSAAWAVGQASNQEIDDWGISHALGIAALRALAQLEHHLGIGIASNQ 125 Query: 114 ------------IPRS-ALIDGRSIP----------EDLPCQAFAV--IKGDSISLSIAA 148 PR A++DG D+P A V +KGD ++A+ Sbjct: 126 TSISSEATTTLRTPRIGAILDGPHDYITKALGTFEAPDVPINAHVVTQVKGDQHCATVAS 185 Query: 149 ASIIAKVTRDRLMRIAHKK--YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 A++IAKVTRD LM ++ Y YG+ S+ GY H+Q I + G +HRL+++ Sbjct: 186 AAVIAKVTRDHLMIELAERPEYAPYGWASNKGYGAKAHRQAIVDHGLCDLHRLSWK 241 >gi|108563693|ref|YP_628009.1| ribonuclease HII [Helicobacter pylori HPAG1] gi|123373683|sp|Q1CRT7|RNH2_HELPH RecName: Full=Ribonuclease HII; Short=RNase HII gi|107837466|gb|ABF85335.1| ribonuclease HII [Helicobacter pylori HPAG1] Length = 204 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 11/188 (5%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG LAG + VA + + G+ DSKK+S KKR L +KI + + Sbjct: 4 GIDEAGRGCLAGSLFVAGVACSEKTALEFLKMGLKDSKKLSQKKRFFLEDKIKTHGEVGF 63 Query: 83 -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138 + S + ID + AI +EN + IDG + + + P +IK Sbjct: 64 FVVKKSAEAIDSLGLGACLKLAIEEILENGCSLANEIKIDGNTAFGLNKRYP-NIQTIIK 122 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD IA AS++AK +DR M H + +YG+D + GY T +H + I + G + HR Sbjct: 123 GDETIAQIAMASVLAKAAKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHR 182 Query: 199 LTFRPLRN 206 +F L+N Sbjct: 183 HSF-TLKN 189 >gi|260907251|ref|ZP_05915573.1| ribonuclease HII [Brevibacterium linens BL2] Length = 243 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 105/224 (46%), Gaps = 32/224 (14%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISH 65 E+ + + V G+DEVGRGALAGPV V + D +P GI+DSK++S Sbjct: 8 DLSYESALLAEGYEFVIGVDEVGRGALAGPVSVGVALFDLREVTAAEVPAGIHDSKQLSA 67 Query: 66 KKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIP--------- 115 R+ +++ A S+ S + +D+ + A A A+ + + Sbjct: 68 LSRQTATDRVNGWARATSVGSTTPNELDELGMTMALNLAGRRALSEMLLECVGSTDFPPS 127 Query: 116 RSALIDGRSI----PEDLPC-------------QAFAVIKGDSISLSIAAASIIAKVTRD 158 L+DG+ P L C Q VIKGD IAAASI+AKV RD Sbjct: 128 TMILLDGKHDWLSAPLTLDCLGIFGDAADLQLPQVRTVIKGDGSVPVIAAASIVAKVQRD 187 Query: 159 RLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 M K P YG+ S+VGY T KH++ I + GPS HR +FR Sbjct: 188 EEMIALAKANPQYGWQSNVGYGTMKHRRGIADFGPSIHHRRSFR 231 >gi|222823127|ref|YP_002574700.1| ribonuclease HII [Campylobacter lari RM2100] gi|222538348|gb|ACM63449.1| ribonuclease HII [Campylobacter lari RM2100] Length = 183 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 68/178 (38%), Positives = 95/178 (53%), Gaps = 6/178 (3%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + G+DE GRGALAG + + A L N G+ DSKK+S KKREELYE+I S++ I Sbjct: 1 MALVGVDEAGRGALAGDMHIGACKLLKN--IDGLADSKKLSAKKREELYEQILSNSNFLI 58 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S ID + + A+ ++ L DG L + ++K D Sbjct: 59 LAFSPLQIDTLGLSQCLQLALKIIKKHFSQ--DEILYDGNLNYGILDIK--TMVKADMKV 114 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++AASI+AKV+RD+ MR K Y +Y FD H GY T H + IK G S +HR +F Sbjct: 115 QEVSAASILAKVSRDQKMRYFSKIYSNYDFDKHKGYGTKAHIEKIKAFGYSPLHRKSF 172 >gi|86153986|ref|ZP_01072188.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597652|ref|ZP_01100885.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 84-25] gi|85842524|gb|EAQ59737.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni HB93-13] gi|88189956|gb|EAQ93932.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 84-25] gi|307746973|gb|ADN90243.1| Ribonuclease HII [Campylobacter jejuni subsp. jejuni M1] gi|315929937|gb|EFV09094.1| Ribonuclease HII [Campylobacter jejuni subsp. jejuni 305] Length = 191 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 68/197 (34%), Positives = 108/197 (54%), Gaps = 8/197 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F+ + ++ E ++ + GIDE GRGALAGP+++AA L N G+ DSKK+S KKR Sbjct: 2 KTLFDTKELLNEFDINLI-GIDEAGRGALAGPMMMAACKL--NKQLDGLCDSKKLSEKKR 58 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 EELYE I ++ I + S + ID + + ++ + L DG + + Sbjct: 59 EELYEIIIKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFKTENNF-LYDGNT---N 114 Query: 129 LPCQ-AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L IK D+ L ++AASI+AKV++DR+M K +P Y F+ + Y T H++ Sbjct: 115 LGINGIKTQIKADASILQVSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKEF 174 Query: 188 IKEKGPSCIHRLTFRPL 204 I + G +HR +F+ L Sbjct: 175 IAKFGICKLHRKSFKLL 191 >gi|189911146|ref|YP_001962701.1| ribonuclease H [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775822|gb|ABZ94123.1| Ribonuclease H [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 246 Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 96/206 (46%), Gaps = 37/206 (17%) Query: 30 DEVGRGALAGPVVVAAIILDP--------NNIPFGINDSKKISHKKREELYEKITSSA-I 80 DE GRG LAGPV V + I + DSKKI KR EL +I A Sbjct: 28 DEAGRGTLAGPVSVGCVSFSSQTLEKIQSGTILKNLRDSKKIPEPKRFELRTEILQYAAY 87 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA---------------------- 118 +S S ++ID+ NI++A I A L V PR Sbjct: 88 WHVSFVSAKFIDRFNINQAIFYGISRA---LPVNPRQVTGHLHKTGIPLGTQTKETLAPF 144 Query: 119 -LIDGR-SIPEDLPCQAF-AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 +DG + P + + ++ KGD + SI+AASI+AK RD M KYP YGF Sbjct: 145 LFVDGNYKLKIHKPIEGYLSIPKGDDLVPSISAASILAKTYRDEYMEKMDAKYPGYGFAK 204 Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTF 201 H GY T +H++ +++ G S IHRL+F Sbjct: 205 HKGYGTEEHREALRKLGISPIHRLSF 230 >gi|116072124|ref|ZP_01469392.1| Ribonuclease H [Synechococcus sp. BL107] gi|116065747|gb|EAU71505.1| Ribonuclease H [Synechococcus sp. BL107] Length = 199 Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 74/187 (39%), Positives = 104/187 (55%), Gaps = 7/187 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAII 81 VAG+DEVGRG L GPV AA++LD G+ DSKK+S K+R L I + Sbjct: 13 VAGVDEVGRGCLFGPVFAAAVVLDQVAEQRLWQAGLTDSKKLSAKRRGSLVPLIEQHCLT 72 Query: 82 S-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 S + AS ID I +AT A+ A++ L+ P L+DG ++ GD Sbjct: 73 SGLGQASAHEIDAVGIRRATERAMLRALQKLEHSPNVVLVDGNLPLRLWSGPQKTLVGGD 132 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S S +IAAAS++AK +RD L+R ++P YG + H GY TA H++ + GP+ +HR + Sbjct: 133 SRSAAIAAASVLAKESRDALIRRLSNRFPGYGLERHAGYGTALHREALLALGPTSMHRRS 192 Query: 201 FRPLRNL 207 F LR L Sbjct: 193 F--LRRL 197 >gi|317178386|dbj|BAJ56174.1| ribonuclease HII [Helicobacter pylori F30] Length = 204 Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 61/189 (32%), Positives = 91/189 (48%), Gaps = 9/189 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSA-- 79 + GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L +KI + Sbjct: 2 ILGIDEAGRGCLAGSLFVAGVVCGEKTASEFLSMGLKDSKKLSPKKRFFLEDKIKTHGEM 61 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVI 137 + S ID + AI +EN + + IDG + +I Sbjct: 62 KFWVVKKSANEIDGLGLGACLKLAIQEILENGRSLANKIKIDGNTAFGLNKRYSNIETII 121 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD IA AS++AK +DR M H + +YG+D + GY T +H + + + G + H Sbjct: 122 KGDEKIAQIAMASVLAKAFKDREMLKLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPFH 181 Query: 198 RLTFRPLRN 206 R +F L+N Sbjct: 182 RHSF-TLKN 189 >gi|210633137|ref|ZP_03297704.1| hypothetical protein COLSTE_01617 [Collinsella stercoris DSM 13279] gi|210159291|gb|EEA90262.1| hypothetical protein COLSTE_01617 [Collinsella stercoris DSM 13279] Length = 262 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 67/169 (39%), Positives = 95/169 (56%), Gaps = 3/169 (1%) Query: 34 RGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSASHQYID 92 RG++AGP+ V A+ L +GINDSK++S KRE L +I A + I + ID Sbjct: 85 RGSVAGPLTVCAVCLPDEPRLWGINDSKQLSPAKREILAVRIAECARAVGICHIPPERID 144 Query: 93 KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASII 152 + + +A +A+ AV + + P L+DG P V+KGD+ IAAASI+ Sbjct: 145 EIGMARALREAVAGAVADTGLQPDCVLMDGN--PLGAVPHERDVVKGDATVACIAAASIV 202 Query: 153 AKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 AKVTRD LM +YP Y GY +A+H Q I+E+G S IHR++F Sbjct: 203 AKVTRDELMVEYDAEYPGYHLAQSKGYASAEHIQAIRERGLSPIHRVSF 251 >gi|153951148|ref|YP_001397283.1| ribonuclease HII [Campylobacter jejuni subsp. doylei 269.97] gi|166225179|sp|A7H1A3|RNH2_CAMJD RecName: Full=Ribonuclease HII; Short=RNase HII gi|152938594|gb|ABS43335.1| ribonuclease HII [Campylobacter jejuni subsp. doylei 269.97] Length = 191 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 68/197 (34%), Positives = 109/197 (55%), Gaps = 8/197 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F+ + ++ E ++ + GIDE GRGALAGP+++AA L N G+ DSKK+S KKR Sbjct: 2 KTLFDTKELLNEFDINLI-GIDEAGRGALAGPMMMAACKL--NKKLDGLCDSKKLSEKKR 58 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 EELYE I ++ I + S + ID + + ++ + L DG + + Sbjct: 59 EELYEIIIKNSNYLILAFSSEQIDTLGLSTCLKTGLKLIKKHFKAENNF-LYDGNT---N 114 Query: 129 LPCQ-AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L IK D+ L ++AASI+AKV++D++M K +P Y F+ + Y T H++V Sbjct: 115 LGINGIKTQIKADTSILQVSAASILAKVSKDKVMNFLAKDFPCYEFEKNKAYGTKAHKEV 174 Query: 188 IKEKGPSCIHRLTFRPL 204 I + G +HR +F+ L Sbjct: 175 IAKFGICKLHRKSFKLL 191 >gi|220925905|ref|YP_002501207.1| ribonuclease HII/HIII [Methylobacterium nodulans ORS 2060] gi|219950512|gb|ACL60904.1| ribonuclease HII/HIII [Methylobacterium nodulans ORS 2060] Length = 211 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 75/184 (40%), Positives = 108/184 (58%), Gaps = 5/184 (2%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS 78 + G DEVGRGAL GPV+VAA+ DP +P ++DSK++ R L ++ Sbjct: 13 YPVLIGCDEVGRGALCGPVIVAAVHFDPAALPPDLLEALDDSKRLDAATRRRLALRLRDC 72 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 A + + AS ID+ NI ATLDA+ +V L + S +DGR +P L + AVI Sbjct: 73 AAFAYAGASRALIDRINIRAATLDAMARSVRRLGI-AGSVAVDGRDLPPGLDGRVQAVIG 131 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 G+ + IAAASI+AKV RD LM + +++P YG++ + GY TA H+ + +GPS HR Sbjct: 132 GERLVPQIAAASILAKVLRDHLMTVLARRHPAYGWERNAGYGTAAHRAAMLRQGPSPHHR 191 Query: 199 LTFR 202 +FR Sbjct: 192 RSFR 195 >gi|283852127|ref|ZP_06369401.1| Ribonuclease H [Desulfovibrio sp. FW1012B] gi|283572517|gb|EFC20503.1| Ribonuclease H [Desulfovibrio sp. FW1012B] Length = 211 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 77/188 (40%), Positives = 106/188 (56%), Gaps = 8/188 (4%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 V GIDE GRG LAGPVV AA++L G+ DSKK+S KR+ L I A+ + Sbjct: 11 LVVGIDEAGRGCLAGPVVAAAVVLPEACQLPGLTDSKKLSATKRDRLAPAIKVQAVAWGL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIP------EDLPCQAFAV 136 A +D+ NI +AT A+ AV ++ P IDG + IP D A+ Sbjct: 71 GVAWPAEVDRINILQATFAAMARAVRAMRAAPTVLRIDGDKRIPAAYLNFLDEAPVQEAI 130 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 I GD +I+AASI+AK +RDR+M + +++P YGF+ H GY A H +++ GP I Sbjct: 131 IGGDLTVPAISAASILAKTSRDRMMTVFARQFPGYGFEGHKGYGVAAHLAALRQLGPCRI 190 Query: 197 HRLTFRPL 204 HRLTFR + Sbjct: 191 HRLTFRGV 198 >gi|283956188|ref|ZP_06373673.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 1336] gi|283792342|gb|EFC31126.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 1336] Length = 191 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 68/197 (34%), Positives = 109/197 (55%), Gaps = 8/197 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F+ + ++ E ++ + GIDE GRGALAGP+++AA L N G+ DSKK+S KKR Sbjct: 2 KTLFDTKELLNEFDINLI-GIDEAGRGALAGPMMMAACKL--NKKLDGLCDSKKLSEKKR 58 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 EELYE I ++ I + S + ID + + ++ + L DG + + Sbjct: 59 EELYEIIIKNSNYLILAFSSEQIDALGLSTCLKTGLKLIKKHFKTENNF-LYDGNT---N 114 Query: 129 LPCQ-AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L IK D+ L ++AASI+AKV++DR+M K +P Y F+ + Y T H+++ Sbjct: 115 LGINGIKTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPYYEFEKNKAYGTKAHKKL 174 Query: 188 IKEKGPSCIHRLTFRPL 204 I + G +HR +F+ L Sbjct: 175 IAKFGICKLHRKSFKLL 191 >gi|57504609|ref|ZP_00370721.1| ribonuclease HII [Campylobacter coli RM2228] gi|57019504|gb|EAL56198.1| ribonuclease HII [Campylobacter coli RM2228] Length = 191 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 63/179 (35%), Positives = 98/179 (54%), Gaps = 5/179 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + GIDE GRGALAGP+++AA L + G+ DSKK+S K+REELYE I + I + Sbjct: 18 LIGIDEAGRGALAGPMMMAACKLHKD--LEGLCDSKKLSEKRREELYEIILLHSDYLILA 75 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ + L ++ + L DG + + IK D+ Sbjct: 76 FSSEKIDEIGLSAC-LKMGLTLIKKHFKTENNFLYDGNTNLGISGIKTQ--IKADANIKQ 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 ++AASI+AKV++DR+M K +P Y F+ + Y T H+++I + G +HR +F+ L Sbjct: 133 VSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKELIAKFGICKLHRKSFKLL 191 >gi|254431100|ref|ZP_05044803.1| ribonuclease HII [Cyanobium sp. PCC 7001] gi|197625553|gb|EDY38112.1| ribonuclease HII [Cyanobium sp. PCC 7001] Length = 201 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 71/192 (36%), Positives = 104/192 (54%), Gaps = 5/192 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE 70 E +N AG+DEVGRG L GPV A++L G+ DSKK+S ++RE Sbjct: 3 EDPWFGRNPACCAGVDEVGRGCLFGPVFAGAVVLGAEAAAALTAQGLTDSKKLSARRREA 62 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L I +A ++ AS ID I +AT A+ A+ L P L+DG Sbjct: 63 LLPLIREAAEAWALGQASAAEIDGFGIRQATERAMQRALAKLPQPPALLLVDGVLPLRGW 122 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P + +++GDS + +IAAAS++AK RD+LMR ++P YG + H GY TA+H+ + Sbjct: 123 PGEQATLVRGDSRNAAIAAASVLAKQARDQLMRTLADRFPGYGLERHAGYGTAQHRAALL 182 Query: 190 EKGPSCIHRLTF 201 GP+ +HR +F Sbjct: 183 SLGPTALHRRSF 194 >gi|300813510|ref|ZP_07093850.1| ribonuclease HII [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512378|gb|EFK39538.1| ribonuclease HII [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 168 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 71/170 (41%), Positives = 98/170 (57%), Gaps = 9/170 (5%) Query: 35 GALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDK 93 G+L G V+ AII+ ++ G+NDSKK++ KKR+ELY KI ++ + I A + IDK Sbjct: 1 GSLFGDVLSCAIIMKEDSNIEGVNDSKKLTAKKRKELYNKILKDSLAVGIGRADAKTIDK 60 Query: 94 HNIHKATLDAIYHAVENLQ------VIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 NI AT ++ A+ENL+ V+P LID +I + ++IKGD SIA Sbjct: 61 LNIKMATHLSMVRAIENLRDSQGNLVVPDLVLIDAENIETTIF--QHSIIKGDENCYSIA 118 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 ASIIAKV RD L YP YG + H GY T H++ +K GPS +H Sbjct: 119 CASIIAKVYRDSLCDKWATIYPGYGIEKHKGYGTKFHREALKAYGPSPMH 168 >gi|300869375|ref|ZP_07113962.1| Ribonuclease HII [Oscillatoria sp. PCC 6506] gi|300332602|emb|CBN59160.1| Ribonuclease HII [Oscillatoria sp. PCC 6506] Length = 178 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 68/178 (38%), Positives = 94/178 (52%), Gaps = 12/178 (6%) Query: 41 VVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHN 95 +V AA IL P + G+ DSK++S R L KI + A+ I AS + ID+ N Sbjct: 1 MVAAACILPPEALEELTALGVRDSKQLSPAARSRLAVKIQAMAVDCQIGVASVREIDRIN 60 Query: 96 IHKATLDAIYHAVENLQVIPRSALIDGR-SIPE------DLPCQAFAVIKGDSISLSIAA 148 I +A+L A+ A+ L +P LIDG IP P +I+GD SL IAA Sbjct: 61 ILQASLLAMKRAILKLNTLPELCLIDGNQRIPNLVVPKAGYPYAQQTMIQGDRRSLVIAA 120 Query: 149 ASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 ASI+AKV RD L+ K+P+Y ++ GY T KH+ ++ G S HR +F P R Sbjct: 121 ASIVAKVWRDELIVRMAVKFPEYDLTNNKGYGTPKHRLGLERYGVSPFHRTSFSPCRK 178 >gi|332701663|ref|ZP_08421751.1| Ribonuclease H [Desulfovibrio africanus str. Walvis Bay] gi|332551812|gb|EGJ48856.1| Ribonuclease H [Desulfovibrio africanus str. Walvis Bay] Length = 211 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 71/203 (34%), Positives = 99/203 (48%), Gaps = 38/203 (18%) Query: 24 WPVAGIDEVGRGA-----------------LAGPVVVAAIILDPNNIPFGINDSKKISHK 66 VAG+DE GRG L G + DSK +S Sbjct: 11 GRVAGVDEAGRGCLAGPVVAAAVVLPAYVKLPG-----------------LADSKLLSPA 53 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS- 124 +R L I + A+ ++ + ID+ N+ +ATL A+ AV L++ P L+DG Sbjct: 54 ERARLEPLIKTRALAWAVGVSWPPEIDERNVLRATLLAMSRAVRALKLSPDELLVDGNQC 113 Query: 125 IPEDL--PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 IPE L A++ GD + I+AAS++AK RDRLM + YP YGF H GY T Sbjct: 114 IPEGLVGFIPQRAIVDGDRLVRCISAASVLAKTFRDRLMGKLERLYPGYGFARHKGYGTR 173 Query: 183 KHQQVIKEKGPSCIHRLTFRPLR 205 +H Q + E GPS +HRLTFR ++ Sbjct: 174 EHLQALVELGPSRMHRLTFRGVK 196 >gi|57236923|ref|YP_178038.1| ribonuclease HII [Campylobacter jejuni RM1221] gi|86150560|ref|ZP_01068784.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CF93-6] gi|86152389|ref|ZP_01070599.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 260.94] gi|121612583|ref|YP_999729.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 81-176] gi|148926828|ref|ZP_01810507.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CG8486] gi|218561703|ref|YP_002343482.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315123625|ref|YP_004065629.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|11387106|sp|Q9PJA1|RNH2_CAMJE RecName: Full=Ribonuclease HII; Short=RNase HII gi|73621839|sp|Q5HXE7|RNH2_CAMJR RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225180|sp|A1VX88|RNH2_CAMJJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|57165727|gb|AAW34506.1| ribonuclease HII [Campylobacter jejuni RM1221] gi|85839012|gb|EAQ56277.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CF93-6] gi|85840686|gb|EAQ57938.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 260.94] gi|87248943|gb|EAQ71905.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 81-176] gi|112359409|emb|CAL34191.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145844553|gb|EDK21660.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CG8486] gi|284925313|gb|ADC27665.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni IA3902] gi|315017347|gb|ADT65440.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315057450|gb|ADT71779.1| Ribonuclease HII [Campylobacter jejuni subsp. jejuni S3] Length = 191 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 68/197 (34%), Positives = 108/197 (54%), Gaps = 8/197 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + F+ + ++ E ++ + GIDE GRGALAGP+++AA L N G+ DSKK+S KKR Sbjct: 2 KTLFDTKELLNEFDINLI-GIDEAGRGALAGPMMMAACKL--NKQLDGLCDSKKLSEKKR 58 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 EELYE I ++ I + S + ID + + ++ + L DG + + Sbjct: 59 EELYEIIIKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFKTENNF-LYDGNT---N 114 Query: 129 LPCQ-AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L IK D+ L ++AASI+AKV++DR+M K +P Y F+ + Y T H++ Sbjct: 115 LGINGIKTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKEF 174 Query: 188 IKEKGPSCIHRLTFRPL 204 I + G +HR +F+ L Sbjct: 175 IAKFGICKLHRKSFKLL 191 >gi|294631838|ref|ZP_06710398.1| ribonuclease HII [Streptomyces sp. e14] gi|292835171|gb|EFF93520.1| ribonuclease HII [Streptomyces sp. e14] Length = 233 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 73/202 (36%), Positives = 113/202 (55%), Gaps = 2/202 (0%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R +AG+DEVGRGA AGPV V A + P G+ DSK ++ K Sbjct: 4 EPPTHTVERSLRATTGAKVIAGVDEVGRGAWAGPVTVCAAVTGLRRPPVGLTDSKLLTVK 63 Query: 67 KREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R EL ++ ++ AS + ID + A A A+E L V P + ++DG+ Sbjct: 64 RRNELDAELRKWVTAYALGHASPEEIDDLGMTAALRLAASRALEALPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + VIKGD +++AAAS+IAKV RD++M ++ D+GF ++ GYP+ H+ Sbjct: 124 YLGAPWKVRTVIKGDRSCVAVAAASVIAKVHRDKMMAELGSEHADFGFAANAGYPSPVHK 183 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 ++E+GP+ HRL++ L L Sbjct: 184 AALEERGPTPYHRLSWAYLDAL 205 >gi|167043779|gb|ABZ08470.1| putative Ribonuclease HII [uncultured marine microorganism HF4000_APKG3D20] Length = 252 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 108/230 (46%), Gaps = 40/230 (17%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--------FGINDSK 61 P + + K + G+DE GRG LAGPVV A++L +NDSK Sbjct: 4 PLWTHDRKA-SKGRAGIVGVDEAGRGCLAGPVVAGAMLLPTGFFKKASNRRRCVEVNDSK 62 Query: 62 KISHKKREELYEKITS-----SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116 +++ ++RE+L++ I + A+ I+ NI AT A+ A++ L Sbjct: 63 QLNEEQREKLFKTIERLRDLGELWFTTGEATVNEIESENIVGATCIAMRRAMDALGDKCE 122 Query: 117 -------------------------SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASI 151 L+DG+ + + LP ++KGD++SL +A ASI Sbjct: 123 GRWGPQDKDEAEGFFASEIEQSERWIVLVDGKPM-KRLPHAHEGLVKGDTLSLGVAMASI 181 Query: 152 IAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 AKVTRDR+MR + YP Y F S+ GY + H + + E GP+ +HR F Sbjct: 182 AAKVTRDRIMRKLDQSYPAYDFASNKGYGSPNHLRGLDEHGPTEVHRPRF 231 >gi|225155690|ref|ZP_03724178.1| Ribonuclease H [Opitutaceae bacterium TAV2] gi|224803484|gb|EEG21719.1| Ribonuclease H [Opitutaceae bacterium TAV2] Length = 278 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 107/230 (46%), Gaps = 39/230 (16%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI--------N 58 P+ P + + G+DE GRGALAGPVV AA+++ + N Sbjct: 27 PKPPQLRGFDLRNLAGHAELIGVDEAGRGALAGPVVAAAVLVRRVFLESRWVAHNASRVN 86 Query: 59 DSKKISHKKREELYEKITSSAI-----ISISSASHQYIDKHNIHKATLDAIYHAVENL-- 111 DSK++S +R+ L + + A+ + A I++ NI AT A+ A+E + Sbjct: 87 DSKQLSAPERDALAFEFETLAVENAIRVGCGVAEVSEIEQFNILGATKLAMRRALECIHP 146 Query: 112 ------QVIPRS-----------------ALIDGRSIPEDLPCQAFAVIKGDSISLSIAA 148 QV P +IDG + + P ++KGD+ SL IA Sbjct: 147 PEAFQQQVEPDLFSTEAELAAWRNRVSCRIIIDGLPL-KSFPYPHLGIVKGDARSLCIAM 205 Query: 149 ASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 ASIIAKVTRDRL+ ++P YGF H GY T +H++ + GP HR Sbjct: 206 ASIIAKVTRDRLLTELDARHPGYGFAQHKGYGTEEHREAVLRLGPCVQHR 255 >gi|290956942|ref|YP_003488124.1| ribonuclease HII [Streptomyces scabiei 87.22] gi|260646468|emb|CBG69565.1| putative ribonuclease HII [Streptomyces scabiei 87.22] Length = 233 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 75/202 (37%), Positives = 112/202 (55%), Gaps = 2/202 (0%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R VAG+DEVGRGA AGPV V A + P G+ DSK ++ K Sbjct: 4 EPPTHTVERSLRATTGAKIVAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLLTIK 63 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +RE L E++ ++ AS + ID + A A A+E L V P + ++DG+ Sbjct: 64 RRESLSEELLKWVTSHALGHASPEEIDDLGMTAALRLAAVRALEALPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + VIKGD +++AAAS+IAKV RD++M + D+GF ++ GYP+ H+ Sbjct: 124 YLGSPWRVRTVIKGDQSCVAVAAASVIAKVQRDKMMAELGVDHADFGFAANAGYPSPVHK 183 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 + E+GP+ HRL++ L L Sbjct: 184 AALAERGPTPYHRLSWAYLDAL 205 >gi|307637994|gb|ADN80444.1| Ribonuclease H II [Helicobacter pylori 908] gi|325996599|gb|ADZ52004.1| Ribonuclease HII [Helicobacter pylori 2018] gi|325998189|gb|ADZ50397.1| Ribonuclease HII [Helicobacter pylori 2017] Length = 191 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 63/188 (33%), Positives = 92/188 (48%), Gaps = 11/188 (5%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG L G + VA ++ + G+ DSKK+S KKR L KI + + Sbjct: 4 GIDEAGRGCLVGSLFVAGVVCGGKTALEFLEMGLKDSKKLSPKKRFFLENKIKTHDEVEF 63 Query: 83 -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138 + S + ID + AI VEN + IDG + + + P +IK Sbjct: 64 FVVKKSAEAIDHLGLGACLKLAIQEIVENGCSLANEIKIDGNTAFGLNKRYP-NIQTIIK 122 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD IA AS++AK +DR M H + +YG+D + GY T +H + I + G + HR Sbjct: 123 GDETIAQIAMASVLAKAAKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHR 182 Query: 199 LTFRPLRN 206 +F L+N Sbjct: 183 HSF-TLKN 189 >gi|116075704|ref|ZP_01472963.1| Ribonuclease HII and HIII [Synechococcus sp. RS9916] gi|116067019|gb|EAU72774.1| Ribonuclease HII and HIII [Synechococcus sp. RS9916] Length = 193 Score = 184 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 100/180 (55%), Gaps = 5/180 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA-II 81 AG+DEVGRG GPV AA++L G+ DSK ++ + R L I +A Sbjct: 6 AGVDEVGRGCWFGPVFAAAVVLSEAAASALTAEGLTDSKALTARHRARLVPLIEDAAEAW 65 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 ++ AS + ID H I +AT A+ A++ L P L+DG P +++GDS Sbjct: 66 ALGQASAREIDHHGIRRATELAMLRALQRLPQQPALVLVDGVLPLRLWPHSQQTIVRGDS 125 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAAS++AK +RD L+R +++P YG + H GY TA H+Q + GP+ +HR +F Sbjct: 126 SKASIAAASVLAKESRDALIRRLAERFPGYGLERHAGYGTAVHRQALLAHGPTAMHRCSF 185 >gi|182435502|ref|YP_001823221.1| ribonuclease HII [Streptomyces griseus subsp. griseus NBRC 13350] gi|238688997|sp|B1VXS2|RNH2_STRGG RecName: Full=Ribonuclease HII; Short=RNase HII gi|178464018|dbj|BAG18538.1| putative ribonuclease HII [Streptomyces griseus subsp. griseus NBRC 13350] Length = 236 Score = 184 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 75/205 (36%), Positives = 112/205 (54%), Gaps = 5/205 (2%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R VAG+DEVGRGA AGPV V A + P G+ DSK ++ + Sbjct: 4 EPPTHTVERSLRATTGARTVAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLLTPR 63 Query: 67 KREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R EL + S ++ AS Q ID + A A A+E L V P + ++DG+ Sbjct: 64 RRAELDPVLRSWVTAYALGDASPQEIDDLGMTAALRLAAVRALEGLPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH---KKYPDYGFDSHVGYPTA 182 +P + VIKGD +++AAAS+IAKV RDR+M + D+ F ++ GYP+ Sbjct: 124 YLGVPWKVRTVIKGDQSCIAVAAASVIAKVHRDRMMAELGAASEDCADFDFGANAGYPSP 183 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 H+ ++E+GP+ HRL++ L L Sbjct: 184 VHRAALEERGPTAHHRLSWAYLDAL 208 >gi|300741389|ref|ZP_07071410.1| ribonuclease HII [Rothia dentocariosa M567] gi|300380574|gb|EFJ77136.1| ribonuclease HII [Rothia dentocariosa M567] Length = 264 Score = 184 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 104/232 (44%), Gaps = 40/232 (17%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKR 68 + E E + +AG+DEVGRGALAGPV V +LD N I G+ DSK ++ K+R Sbjct: 5 NLEHEQKLFTAGYRLIAGLDEVGRGALAGPVSVGVAVLDQQNQRILEGLTDSKALTPKRR 64 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRS- 124 E L +I +I + ID + A A A+ +L + P +AL+DG+ Sbjct: 65 EALIPRIQKWCSYAIGHTTPAEIDVLGMTYALRLAAQRALADLAYRGLYPEAALLDGKHD 124 Query: 125 ----------------------------------IPEDLPCQAFAVIKGDSISLSIAAAS 150 + + +IKGD SIAAAS Sbjct: 125 WLSPPPENLFDSMDPVHRRYEELLHRVWNGANSAVEKGWSGPVTTIIKGDYQCASIAAAS 184 Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 ++AKV RD M + P YG+ + GY + H+Q I E GPS HRL++ Sbjct: 185 VVAKVDRDAFMESLSAENPHYGWVKNKGYGSVAHRQAISEYGPSIYHRLSWS 236 >gi|328885537|emb|CCA58776.1| Ribonuclease HII [Streptomyces venezuelae ATCC 10712] Length = 236 Score = 184 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 75/205 (36%), Positives = 107/205 (52%), Gaps = 5/205 (2%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R VAG+DEVGRGA AGPV V A + P G+ DSK I+ K Sbjct: 4 EPPTHTVERSLRATTGAKIVAGVDEVGRGAWAGPVTVCAAVTGLRRAPEGLTDSKLITPK 63 Query: 67 KREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R L ++ ++ AS Q ID+ + A A A+E L V P + ++DG+ Sbjct: 64 RRTTLAAELEGWVTAYALGDASPQEIDELGMTAALRLAAVRALEGLPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA---HKKYPDYGFDSHVGYPTA 182 P Q VIKGD +++AAAS+IAKV RD M Y Y F ++ GYP+ Sbjct: 124 YLGGPWQVRTVIKGDQSCIAVAAASVIAKVRRDAFMAELETSAGDYAAYAFGANAGYPSP 183 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 H+ ++E GP+ HRL++ L + Sbjct: 184 VHKAALEELGPTPHHRLSWSYLDAM 208 >gi|302557990|ref|ZP_07310332.1| ribonuclease HII [Streptomyces griseoflavus Tu4000] gi|302475608|gb|EFL38701.1| ribonuclease HII [Streptomyces griseoflavus Tu4000] Length = 233 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 73/202 (36%), Positives = 110/202 (54%), Gaps = 2/202 (0%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R VAG+DEVGRGA AGPV V A + P G+ DSK ++ K Sbjct: 4 EPPTHTVERSLRATTGAKIVAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLLTVK 63 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R +L E + ++ AS + ID + A A A+E L V P + ++DG+ Sbjct: 64 RRTQLAETLRGWVTSYALGHASPEEIDAMGMTAALRLAAGRALEALPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + VIKGD +++AAAS+IAKV RD++M + D+GF + GYP+ H+ Sbjct: 124 YLGTPWRVRTVIKGDQSCVAVAAASVIAKVQRDKMMAELGIDHADFGFADNAGYPSPVHR 183 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 ++ +GP+ HRL++ L L Sbjct: 184 AALEVRGPTPYHRLSWAYLDAL 205 >gi|315637835|ref|ZP_07893025.1| ribonuclease HII [Campylobacter upsaliensis JV21] gi|315482076|gb|EFU72690.1| ribonuclease HII [Campylobacter upsaliensis JV21] Length = 174 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 68/178 (38%), Positives = 104/178 (58%), Gaps = 8/178 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + GIDE GRGALAGP+ +AA +L P N + DSKK+S KKRE+LY +I ++ I Sbjct: 2 LVGIDEAGRGALAGPLFMAACELLKPLNE---LKDSKKLSEKKREKLYNEIILNSNYLIL 58 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + S+ ID + K + + +L + + DG + L + +IK DS+ Sbjct: 59 AFSNAQIDTLGLSKCLQRGLE--IIHLHFEKQRKIFDGNTNYGVLGIE--NLIKADSLIA 114 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 ++AASI+AKV+RD++M+ KYP YGF+ H Y T H++ I + G +HRL+F+ Sbjct: 115 EVSAASILAKVSRDKVMQFLALKYPQYGFEIHKAYGTKAHRESIAKYGACKLHRLSFK 172 >gi|257068188|ref|YP_003154443.1| ribonuclease HII [Brachybacterium faecium DSM 4810] gi|256559006|gb|ACU84853.1| ribonuclease HII [Brachybacterium faecium DSM 4810] Length = 272 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 67/210 (31%), Positives = 101/210 (48%), Gaps = 17/210 (8%) Query: 10 PHFELEAMV---REKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSK 61 P ++E + R + G+DEVGRGALAGPV V A ++ +P G+ DSK Sbjct: 6 PTLQVEQSLAVGRGPGRRIIVGVDEVGRGALAGPVAVGACAVEVVGGLAAPLPEGVRDSK 65 Query: 62 KISHKKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K++ ++RE L E I S + + AS ID+ I A A A++ L V + ++ Sbjct: 66 KLTARRREALVEPILGSVLAGAVGWASPAEIDEIGIMPALTTAALRALDLLGVAADAIVL 125 Query: 121 DG--------RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 DG + P + D S+AAASI+AKV RD M + P+Y Sbjct: 126 DGDVDVLTPALTAPGRPTPLVHLQVSADRDCASVAAASILAKVARDARMVELDAEAPEYC 185 Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 + S+ GY + H++ I G HR ++R Sbjct: 186 WASNKGYGSKPHREAIDRFGVHAHHRRSWR 215 >gi|195953419|ref|YP_002121709.1| Ribonuclease H [Hydrogenobaculum sp. Y04AAS1] gi|195933031|gb|ACG57731.1| Ribonuclease H [Hydrogenobaculum sp. Y04AAS1] Length = 213 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 71/194 (36%), Positives = 98/194 (50%), Gaps = 11/194 (5%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAI------ILDPNNIPFGINDSKKISHKK 67 E ++ + A +DE GRGALAGP+VV AI I DSKK+ Sbjct: 21 YEHQFLKRGLTL-ACVDEAGRGALAGPLVVGAILVDNLDIFFEEEYTLIKGDSKKLKEAD 79 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 R ++ I S+ A+HQ ID I KAT A+ A+E L+ L D ++ E Sbjct: 80 RFWAFDTIKKYFKYSVGIATHQEIDDFGITKATKMAMKRALEALKGF-DIVLSDFINL-E 137 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D C ++KGD S SI AS++AK TRD++M + + FD H GY T +H + Sbjct: 138 DYDC--IPIVKGDEKSFSIRLASLVAKATRDKMMIDYASSFKPFSFDKHKGYGTKEHIKE 195 Query: 188 IKEKGPSCIHRLTF 201 IK+ G S IHR +F Sbjct: 196 IKDFGLSSIHRRSF 209 >gi|182413915|ref|YP_001818981.1| ribonuclease H [Opitutus terrae PB90-1] gi|177841129|gb|ACB75381.1| Ribonuclease H [Opitutus terrae PB90-1] Length = 261 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 111/240 (46%), Gaps = 41/240 (17%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-------- 57 +P+R + + + + + G+DE GRGALAGPVV A+++ + Sbjct: 1 MPKRRQLRAFDLKQIEGLSGLIGVDEAGRGALAGPVVAGAVMVTKEFLEGRWAVTKAGRV 60 Query: 58 NDSKKISHKKREEL---YEKITSSAIISI--SSASHQYIDKHNIHKATLDAIYHAVENL- 111 NDSK+++ REEL +E++ + I A +++ NI AT A+ A+E + Sbjct: 61 NDSKQLTPAMREELWAEFEELVNQGQIHATFGVADVAEVEQLNILGATKLAMQRALEAIY 120 Query: 112 -------QVIPRS-----------------ALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 + P L+DG ++ P ++I GD+ SL IA Sbjct: 121 PPSAFQQKTEPDLFTSAEELAAYQPTVSCRILLDGLAM-RKFPYPHHSIISGDARSLCIA 179 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 ASI+AKV RDRLM K+P YGF H GY T +H + + G HR F LR L Sbjct: 180 MASIVAKVQRDRLMCELELKHPGYGFAQHKGYGTPEHCEALLRLGRCAQHRDLF--LRKL 237 >gi|283458215|ref|YP_003362833.1| ribonuclease HII [Rothia mucilaginosa DY-18] gi|283134248|dbj|BAI65013.1| ribonuclease HII [Rothia mucilaginosa DY-18] Length = 278 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 105/242 (43%), Gaps = 43/242 (17%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSK 61 + P E E + VAGIDEVGRG++AGPV V IL P+ G+ DSK Sbjct: 21 KATPPAADLEYEQQLFASGARTVAGIDEVGRGSMAGPVTVGVAILTPDATLEVGGLIDSK 80 Query: 62 KISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSA 118 +S +RE + +I +++ ID+ + + A A+ L +A Sbjct: 81 ALSPARRESMVPEIRQWCAVAVGHVEPADIDRLGMTLSLRLAAQRALAELARRGYRADAA 140 Query: 119 LIDGRSI-----PEDL---------------------------------PCQAFAVIKGD 140 L+DG+ EDL VIKGD Sbjct: 141 LLDGKHDWFTPPQEDLFSALAPDPAQAHYNALLAQAWEGAGEGGAGEPAQMPVTMVIKGD 200 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 SIAAAS++AKV RD LM +YP YG+ + GY +A H++ I +GPS HRL+ Sbjct: 201 YKCASIAAASVVAKVERDELMVQLDTRYPGYGWAKNKGYGSAAHREAISVQGPSPQHRLS 260 Query: 201 FR 202 + Sbjct: 261 WS 262 >gi|328955473|ref|YP_004372806.1| RNase HII [Coriobacterium glomerans PW2] gi|328455797|gb|AEB06991.1| RNase HII [Coriobacterium glomerans PW2] Length = 262 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 72/189 (38%), Positives = 103/189 (54%), Gaps = 3/189 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E R V G+DEVGRG++AGP+ V A+ L P I +G+NDSK++S KR++L Sbjct: 65 YEMQTRLGGRGVVIGVDEVGRGSVAGPLTVCAVCLPPTPIIWGVNDSKRLSAAKRQKLAA 124 Query: 74 KITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I A I I ID+ + A A+ AV + + P L+DG P + Sbjct: 125 RIERIARAIGICHIPACDIDRCGMGAALRHAVRLAVADCGLEPDCVLMDGN--PLGAVER 182 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 V+ GD++ SIAAASI+AKVTRD LM YP Y + GY + +H + I+E+G Sbjct: 183 ERCVVHGDALVASIAAASIVAKVTRDDLMIELDSTYPGYHLAASKGYASPEHIEAIRERG 242 Query: 193 PSCIHRLTF 201 + HR +F Sbjct: 243 LTPEHRASF 251 >gi|170743460|ref|YP_001772115.1| ribonuclease H [Methylobacterium sp. 4-46] gi|168197734|gb|ACA19681.1| Ribonuclease H [Methylobacterium sp. 4-46] Length = 209 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 79/199 (39%), Positives = 112/199 (56%), Gaps = 9/199 (4%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKI 63 +RP EA + G DEVGRGAL GPV+VAA+ DP +P ++DSK++ Sbjct: 2 KRPFLAREAA----RYPALIGCDEVGRGALCGPVIVAAVHFDPAALPPDLLEALDDSKRL 57 Query: 64 SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 R L ++ + A I+ + AS ID+ N+ ATLDA+ AV L + +DGR Sbjct: 58 DAATRARLAARLPALARIAYAGASRDLIDRINVRAATLDAMARAVLRLG-LAGPVAVDGR 116 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 P L + AVI G+ + IAAASI+AKV RDRLM + +++P Y + + GY TA Sbjct: 117 DRPPGLDGRVRAVIGGERLVPQIAAASILAKVLRDRLMAVLARRHPAYAWARNAGYGTAA 176 Query: 184 HQQVIKEKGPSCIHRLTFR 202 H+ + +GPS HR +FR Sbjct: 177 HRAALLREGPSPHHRRSFR 195 >gi|139439754|ref|ZP_01773145.1| Hypothetical protein COLAER_02176 [Collinsella aerofaciens ATCC 25986] gi|133774904|gb|EBA38724.1| Hypothetical protein COLAER_02176 [Collinsella aerofaciens ATCC 25986] Length = 262 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 61/169 (36%), Positives = 92/169 (54%), Gaps = 3/169 (1%) Query: 34 RGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSASHQYID 92 RG++AGP+ V A+ L +GINDSKK++ +RE L KI A I + + ID Sbjct: 85 RGSVAGPLTVCAVCLPMEPRVWGINDSKKLTPARRELLSVKIAEVATAIGFCHIAPKDID 144 Query: 93 KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASII 152 + + +A A+ AV + + P L+DG P V+KGD+ IAAASI+ Sbjct: 145 EMGMARAIRTAVAGAVADTGLEPDCVLMDGN--PLGAVPNERDVVKGDAKIACIAAASIM 202 Query: 153 AKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 AKVTRD +M +YP+Y GY + +H + I++ G +HR++F Sbjct: 203 AKVTRDEMMVEYDAEYPEYHLAESKGYASPEHIEAIRKHGLCPLHRVSF 251 >gi|223038412|ref|ZP_03608706.1| ribonuclease HII [Campylobacter rectus RM3267] gi|222880269|gb|EEF15356.1| ribonuclease HII [Campylobacter rectus RM3267] Length = 189 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 63/191 (32%), Positives = 100/191 (52%), Gaps = 8/191 (4%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77 ++ K+ + GIDE GRGALAGP+ VAA +L G NDSKK++ K+REEL+ +I Sbjct: 1 MKNKSNAQICGIDEAGRGALAGPLAVAACVLK--REIAGPNDSKKLTAKRREELFGQIAG 58 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 ++ I+ S++ ID+ + + A+ + L DG + + ++ Sbjct: 59 NSEFLIAYFSNEQIDELGLSECLRRALR--LFKSHFAGCEPLYDGNA---NYGTGVKTMV 113 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 D ++AASI+AKV+RD LMR + YG+ +H GY T H I G S + Sbjct: 114 GADGKVAQVSAASILAKVSRDVLMRAWDGVHGGYGYAAHKGYGTKAHLDAIARLGDSPLQ 173 Query: 198 RLTFRPLRNLS 208 R +FR +++ Sbjct: 174 RRSFR-VKSFE 183 >gi|295396057|ref|ZP_06806241.1| ribonuclease HII [Brevibacterium mcbrellneri ATCC 49030] gi|294971145|gb|EFG47036.1| ribonuclease HII [Brevibacterium mcbrellneri ATCC 49030] Length = 231 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 102/207 (49%), Gaps = 20/207 (9%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-----PFGINDSKKISHKKRE 69 E + + + V G+DEVGRG +AGPV V A+ D + P G+ DSKK++ + R Sbjct: 23 ERALLDAGVTSVVGMDEVGRGCVAGPVGVGAVWCDLEALCAGGFPAGLRDSKKLTPRPRS 82 Query: 70 ELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR----- 123 E++ + ++ AS Q ID I A A A+ L ++DG+ Sbjct: 83 LAAERVRATWEHAVVAYASPQEIDAMGISAALSLAGRRALAQL-PAADLVMLDGKFNWLG 141 Query: 124 SIPEDLPC--------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 + P L + GD + IAAAS+IAKV RD +M +++ YG+ S Sbjct: 142 TDPGLLGGDVSHVEVPPVRMYVGGDDQRIPIAAASLIAKVDRDAVMSSLDREHHGYGWAS 201 Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +VGYP+ H+Q I + G + HR +FR Sbjct: 202 NVGYPSPAHKQAIADLGVTPWHRKSFR 228 >gi|78185595|ref|YP_378029.1| ribonuclease HII [Synechococcus sp. CC9902] gi|97189417|sp|Q3AW47|RNH2_SYNS9 RecName: Full=Ribonuclease HII; Short=RNase HII gi|78169889|gb|ABB26986.1| RNase HII [Synechococcus sp. CC9902] Length = 199 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 75/188 (39%), Positives = 100/188 (53%), Gaps = 7/188 (3%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAI 80 VAG+DEVGRG L GPV AA++LD G+ DSKK+S K+R L I + Sbjct: 12 RVAGVDEVGRGCLFGPVFAAAVVLDEVAEQRLWQAGLTDSKKLSAKRRAGLVPLIEQHCL 71 Query: 81 I-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 + AS ID I AT A+ A++ L P L+DG V+ G Sbjct: 72 TRGLGQASAHEIDAVGIRGATERAMLRALQKLAHPPNVVLVDGNLPLRLWSGSQQTVVGG 131 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS S +IAAAS++AK RD L+R ++P YG + H GY TA HQ+ + GP+ +HR Sbjct: 132 DSRSAAIAAASVLAKEARDALIRRLSDQFPGYGLERHAGYGTALHQKALLALGPTSLHRR 191 Query: 200 TFRPLRNL 207 +F LR L Sbjct: 192 SF--LRRL 197 >gi|255326009|ref|ZP_05367097.1| ribonuclease HII [Rothia mucilaginosa ATCC 25296] gi|255296900|gb|EET76229.1| ribonuclease HII [Rothia mucilaginosa ATCC 25296] Length = 276 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 105/241 (43%), Gaps = 41/241 (17%) Query: 3 CNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDS 60 + P E E + VAGIDEVGRG++AGPV V IL P+ G+ DS Sbjct: 20 AKATPPAADLEYEQQLFASGARTVAGIDEVGRGSMAGPVTVGVAILTPDATLEVGGLIDS 79 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRS 117 K +S +RE + +I +++ ID+ + + A A+ L + Sbjct: 80 KALSPARRESMVPEIRQWCAVAVGHVEPADIDRLGMTLSLRLAAQRALAELARRGYRADA 139 Query: 118 ALIDGRSI-----PEDL-------------------------------PCQAFAVIKGDS 141 AL+DG+ EDL VIKGD Sbjct: 140 ALLDGKHDWFTPPQEDLFSALAPDPAQAHYNALLAQAWEGAGGAGEPAQMPVTMVIKGDY 199 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAAS++AKV RD LM +YP YG+ + GY +A H++ I +GPS HRL++ Sbjct: 200 KCASIAAASVVAKVERDELMVQLDIRYPGYGWAKNKGYGSAAHREAISVQGPSPQHRLSW 259 Query: 202 R 202 Sbjct: 260 S 260 >gi|297191618|ref|ZP_06909016.1| ribonuclease HII [Streptomyces pristinaespiralis ATCC 25486] gi|197719359|gb|EDY63267.1| ribonuclease HII [Streptomyces pristinaespiralis ATCC 25486] Length = 233 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 76/202 (37%), Positives = 112/202 (55%), Gaps = 2/202 (0%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R VAGIDEVGRGA AGPV V A + P G+ DSK I+ K Sbjct: 4 EPPTHAVERSIRATTGAKIVAGIDEVGRGAWAGPVTVCAAVTGLRRPPVGLTDSKLITPK 63 Query: 67 KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R E+ E + ++ AS + ID+ + A A A+E L V P + ++DG+ Sbjct: 64 RRAEMAELLEGWVTAHALGHASPEEIDELGMTAALRLAAGRALEGLPVRPDAIILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 +P Q VIKGD +++AAAS+IAKV RD +M +++ +GF + GYP+ H+ Sbjct: 124 YLGVPWQVRTVIKGDQSCVAVAAASVIAKVHRDAMMAQLPEEFTAFGFADNAGYPSPVHK 183 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 ++E GP+ HRL++ L L Sbjct: 184 AALRELGPTPYHRLSWAYLDYL 205 >gi|123969237|ref|YP_001010095.1| ribonuclease HII and HIII [Prochlorococcus marinus str. AS9601] gi|166226638|sp|A2BT77|RNH2_PROMS RecName: Full=Ribonuclease HII; Short=RNase HII gi|123199347|gb|ABM70988.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. AS9601] Length = 205 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 73/201 (36%), Positives = 110/201 (54%), Gaps = 8/201 (3%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSK 61 + E+ +L+ + + + GIDEVG+GA+ GPV AA++L N FG+ DSK Sbjct: 1 MQEKKEEDLQQALNKVSE---VGIDEVGKGAIFGPVFAAAVVLTEKNKFILKQFGVTDSK 57 Query: 62 KISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K++ KKR+ L KI S+ I +S + IDK I AT ++ A+ L+ P +I Sbjct: 58 KLTPKKRKLLLPKILLLSSDYGIGQSSAREIDKLGIRVATELSMIRALRKLKEKPSELII 117 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG + ++ GDS +SIA+ASI+AKV+RD LM K Y Y + GY Sbjct: 118 DGPLLLRPWNGIQKNIVSGDSKFISIASASIVAKVSRDNLMERLEKNYSGYLIFKNKGYG 177 Query: 181 TAKHQQVIKEKGPSCIHRLTF 201 T +H +IK+ G + +HR +F Sbjct: 178 TREHLSLIKKNGITELHRKSF 198 >gi|33864055|ref|NP_895615.1| ribonuclease HII [Prochlorococcus marinus str. MIT 9313] gi|39932296|sp|Q7V4Z5|RNH2_PROMM RecName: Full=Ribonuclease HII; Short=RNase HII gi|33635639|emb|CAE21963.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9313] Length = 218 Score = 182 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 62/181 (34%), Positives = 97/181 (53%), Gaps = 5/181 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSA-I 80 +AG+DEVGRG GPV A++L + G+ DSK ++ ++R L I +A Sbjct: 26 IAGVDEVGRGCWFGPVFAGAVVLTEVAAVELLAEGLTDSKALTVRRRARLVPLIEDAATA 85 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 ++ AS + ID I AT A+ A++ L L+DG V++GD Sbjct: 86 WALGQASAREIDALGIRSATELAMLRALQRLPTPLELVLVDGVLPLRLWMGPQRTVVRGD 145 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S +IAAAS++AK RD L++ ++ YG + HVGY TA H++ + + GP+ +HR + Sbjct: 146 SKCAAIAAASVLAKQARDGLIKRLASRFYGYGLERHVGYGTAIHRRALLDLGPTELHRRS 205 Query: 201 F 201 F Sbjct: 206 F 206 >gi|329939992|ref|ZP_08289274.1| ribonuclease HII [Streptomyces griseoaurantiacus M045] gi|329300818|gb|EGG44714.1| ribonuclease HII [Streptomyces griseoaurantiacus M045] Length = 233 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 72/202 (35%), Positives = 112/202 (55%), Gaps = 2/202 (0%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R +AG+DEVGRGA AGPV V A + P G+ DSK ++ K Sbjct: 4 EPPTHTVERSLRATTGAKVIAGVDEVGRGAWAGPVTVCAAVTGLRRPPPGLTDSKLLTVK 63 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R EL E + + ++ AS Q ID+ + A A A+E L V P + ++DG+ Sbjct: 64 RRTELAETLRTWVTSYALGHASPQEIDERGMTAALRLAAVRALEALPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + VIKGD +++AAAS++AKV RD++M + D+ F ++ GYP+ H+ Sbjct: 124 YLGSPWKVRTVIKGDQSCVAVAAASVLAKVQRDKMMAELGVDHADFAFAANAGYPSPVHR 183 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 ++ +GP+ HRL++ L L Sbjct: 184 AALEVRGPTPYHRLSWAYLDAL 205 >gi|291448253|ref|ZP_06587643.1| ribonuclease HII [Streptomyces roseosporus NRRL 15998] gi|291351200|gb|EFE78104.1| ribonuclease HII [Streptomyces roseosporus NRRL 15998] Length = 236 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 76/205 (37%), Positives = 111/205 (54%), Gaps = 5/205 (2%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R VAG+DEVGRGA AGPV V A I P G+ DSK ++ + Sbjct: 4 EPPTHTVERSIRATTGARTVAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLLTPR 63 Query: 67 KREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R EL + S ++ AS Q ID + A A A+E L V P + ++DG+ Sbjct: 64 RRAELEPVLRSWVTACALGDASPQEIDDLGMTAALRLAAVRALEGLPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH---KKYPDYGFDSHVGYPTA 182 P + VIKGD +++AAAS+IAKV RDR+M + + FD++ GYP+ Sbjct: 124 YLGAPWKVRTVIKGDQSCIAVAAASVIAKVHRDRMMAELGAASEDCGGFAFDANAGYPSP 183 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 H+ ++E+GP+ HRL++ L L Sbjct: 184 VHRAALEERGPTVHHRLSWSYLDAL 208 >gi|326776139|ref|ZP_08235404.1| Ribonuclease H [Streptomyces cf. griseus XylebKG-1] gi|326656472|gb|EGE41318.1| Ribonuclease H [Streptomyces cf. griseus XylebKG-1] Length = 236 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 74/205 (36%), Positives = 112/205 (54%), Gaps = 5/205 (2%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R VAG+DEVGRGA AGPV V A + P G+ DSK ++ + Sbjct: 4 EPPTHTVERSLRATTGARTVAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLLTPR 63 Query: 67 KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R E+ + S ++ AS Q ID + A A A+E L V P + ++DG+ Sbjct: 64 RRAEIDPVLRSWVTAHALGDASPQEIDDLGMTAALRLAAVRALEGLPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH---KKYPDYGFDSHVGYPTA 182 +P + VIKGD +++AAAS+IAKV RDR+M + D+ F ++ GYP+ Sbjct: 124 YLGVPWKVRTVIKGDQSCIAVAAASVIAKVHRDRMMAELGAASEDCADFDFGANAGYPSP 183 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 H+ ++E+GP+ HRL++ L L Sbjct: 184 VHRAALEERGPTAHHRLSWAYLDAL 208 >gi|124024062|ref|YP_001018369.1| ribonuclease HII [Prochlorococcus marinus str. MIT 9303] gi|189043640|sp|A2CC94|RNH2_PROM3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|123964348|gb|ABM79104.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9303] Length = 200 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 61/181 (33%), Positives = 97/181 (53%), Gaps = 5/181 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSA-I 80 +AG+DEVGRG GPV A++L + G+ DSK ++ ++R L I +A Sbjct: 8 IAGVDEVGRGCWFGPVFAGAVVLTEVAAVELLAEGLTDSKALTVRRRARLVPLIEDAATA 67 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 ++ AS + ID I AT ++ A++ L L+DG V++GD Sbjct: 68 WALGQASAREIDALGIRSATELSMLRALQRLPTPLELVLVDGVLPLRLWMGPQRTVVRGD 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S +IAAAS++AK RD L++ ++ YG + HVGY TA H++ + + GP+ +HR + Sbjct: 128 SKCAAIAAASVLAKQARDGLIKRLASRFYGYGLERHVGYGTAIHRRALLDLGPTALHRRS 187 Query: 201 F 201 F Sbjct: 188 F 188 >gi|257063750|ref|YP_003143422.1| ribonuclease HII [Slackia heliotrinireducens DSM 20476] gi|256791403|gb|ACV22073.1| ribonuclease HII [Slackia heliotrinireducens DSM 20476] Length = 258 Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 70/198 (35%), Positives = 101/198 (51%), Gaps = 10/198 (5%) Query: 12 FELEAMVREK----NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LE+M G+DEVGRG +AGP+ VAA++L G+NDSK+++ Sbjct: 53 LRLESMYATASALAGGGLAMGLDEVGRGPVAGPLTVAAVVLPDAPRIEGLNDSKQVAPAA 112 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVI---PRSALIDGR 123 R + E I + A+ I ID + + A A+ + + L+DG Sbjct: 113 RTRMAESIKACALAWDIEFIEPHDIDAYGMSACLRTAFGQAIAAIDEQLSGVAAVLLDGN 172 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 P + + +IKGD+ IAAASIIAKV RD LM K+YP YGFDS+ GY +A Sbjct: 173 --PLHIDPRERNIIKGDAKCAPIAAASIIAKVERDALMCEYAKEYPQYGFDSNKGYGSAD 230 Query: 184 HQQVIKEKGPSCIHRLTF 201 H + I+ G + +HR +F Sbjct: 231 HIEAIRTYGLTPVHRASF 248 >gi|113953937|ref|YP_729607.1| ribonuclease HII [Synechococcus sp. CC9311] gi|122945826|sp|Q0ID65|RNH2_SYNS3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|113881288|gb|ABI46246.1| ribonuclease HII [Synechococcus sp. CC9311] Length = 197 Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 66/187 (35%), Positives = 102/187 (54%), Gaps = 7/187 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA-I 80 +AG+DEVGRG L GPV AA++L + G+ DSK ++ +R L I + A Sbjct: 9 IAGVDEVGRGCLFGPVFAAAVVLSDHAAEHLQAAGLTDSKALTPSRRAALVPLIEAHAHA 68 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 + +S + +D+ I AT A+ A++ L P+ L+DG +++GD Sbjct: 69 WGLGQSSARAVDRDGIRSATEQAMLCALQRLPCRPQLVLVDGVLPLRLWEGSQRTIVRGD 128 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S +IAAAS++AK RD L+R ++P YG + H GY TA+H+ + GP+ +HR + Sbjct: 129 SSHAAIAAASVLAKEARDALIRRLSNRFPGYGLERHAGYGTAQHRAALLACGPTPLHRHS 188 Query: 201 FRPLRNL 207 F LR L Sbjct: 189 F--LRKL 193 >gi|326403378|ref|YP_004283459.1| ribonuclease HII [Acidiphilium multivorum AIU301] gi|325050239|dbj|BAJ80577.1| ribonuclease HII [Acidiphilium multivorum AIU301] Length = 199 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 87/200 (43%), Positives = 111/200 (55%), Gaps = 9/200 (4%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG---INDSKKISH 65 P F E + VAG+DEVGRG LAGPVV AA IL + P I+DSK++S Sbjct: 1 MPDFSRELALG----GVVAGVDEVGRGPLAGPVVAAAAILPADLPPEIAALIDDSKRLSP 56 Query: 66 KKREELYEK-ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 +RE I S A IS ++AS I + NI +A+L A+ AV L V P L+DG Sbjct: 57 ARREAALAALIESGAAISAAAASVAEIARLNILQASLLAMRRAVARLAVRPDHVLVDG-Q 115 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + DLP V+ GD +SLSIAAASI AK+ RDR M ++YP YG+ + GY T H Sbjct: 116 VAPDLPMPCTPVVGGDGLSLSIAAASIAAKLVRDRAMSRLDRRYPGYGWARNSGYATKTH 175 Query: 185 QQVIKEKGPSCIHRLTFRPL 204 + I G + HR F PL Sbjct: 176 RDAILGLGITPHHRRGFGPL 195 >gi|307718734|ref|YP_003874266.1| ribonuclease HII [Spirochaeta thermophila DSM 6192] gi|306532459|gb|ADN01993.1| ribonuclease HII [Spirochaeta thermophila DSM 6192] Length = 193 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 82/186 (44%), Positives = 106/186 (56%), Gaps = 8/186 (4%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M V GIDEVGRG LAGPVV AA++L P G+ DSKK+S ++RE L+ I +A Sbjct: 1 MDTVCGIDEVGRGPLAGPVVAAAVVLTPGTSLPGLKDSKKLSPEERERLFPLILEAAAAV 60 Query: 83 ISSAS-HQYIDKHNIHKATLDAIYHAVENL------QVIPRSALIDGRSIPEDLPCQAFA 135 + +D+ NIH ATL A+ A E L ++P +IDGR P + A A Sbjct: 61 GVGWAWPHEVDRFNIHNATLKAMERAYEMLIQKLSPSLVPTEVVIDGRHAPPSITH-ARA 119 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V+K DS + AASI+AKV RD M+I H+ P+Y F H GYPT H++ I G Sbjct: 120 VVKADSFVPEVMAASIVAKVFRDEWMKIYHRFLPEYTFSQHKGYPTRLHRERILTIGSCP 179 Query: 196 IHRLTF 201 IHR TF Sbjct: 180 IHRRTF 185 >gi|315185664|gb|EFU19432.1| RNase HII [Spirochaeta thermophila DSM 6578] Length = 193 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 81/186 (43%), Positives = 106/186 (56%), Gaps = 8/186 (4%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M V GIDEVGRG LAGPVV AA++L P G+ DSKK+S ++RE L+ I +A Sbjct: 1 MDTVCGIDEVGRGPLAGPVVAAAVVLTPGTSLPGLKDSKKLSPEERERLFPLIQEAAAAV 60 Query: 83 ISSAS-HQYIDKHNIHKATLDAIYHAVENL------QVIPRSALIDGRSIPEDLPCQAFA 135 + +D+ NIH ATL A+ A E L ++P +IDGR P + A A Sbjct: 61 GVGWAWPHEVDRLNIHNATLKAMERAYEMLIQKLSPSLVPTEVVIDGRHAPPSITH-ARA 119 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V+K D+ + AASI+AKV RD M+I H+ P+Y F H GYPT H++ I G Sbjct: 120 VVKADTFVPEVMAASIVAKVFRDEWMKIYHRFLPEYTFSQHKGYPTRLHRERILTIGSCP 179 Query: 196 IHRLTF 201 IHR TF Sbjct: 180 IHRRTF 185 >gi|309811499|ref|ZP_07705281.1| ribonuclease HII [Dermacoccus sp. Ellin185] gi|308434550|gb|EFP58400.1| ribonuclease HII [Dermacoccus sp. Ellin185] Length = 233 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 96/225 (42%), Gaps = 37/225 (16%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-----------AAIILDPNNIPFGIN 58 P LE + VAG+DEVGRGALA AA + +P G+ Sbjct: 6 PTLRLERQLLRTGYTLVAGMDEVGRGALA-----GPVSVGVSVVDAAT----STVPQGVK 56 Query: 59 DSKKISHKKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117 DSK + KR +L ++ A+ + AS ID + +A A A+ L V P Sbjct: 57 DSKLVPEPKRPDLARRVRRWALDGAVGHASPTEIDALGMTRALRLAGTRALAQLSVRPDV 116 Query: 118 ALIDGRSI---------------PEDLP-CQAFAVIKGDSISLSIAAASIIAKVTRDRLM 161 ++DG+ PE P IK D S+A AS++AKV RD +M Sbjct: 117 VILDGKHDWLSEPETVGLLGLLEPESAPTWHVVTQIKADMRCSSVAGASLLAKVERDAMM 176 Query: 162 RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 A + +P YG+ + GY H I G +HR +++ R+ Sbjct: 177 VDAARDHPVYGWGINKGYSAPDHLAAIAAHGACDLHRRSWKTFRD 221 >gi|184200715|ref|YP_001854922.1| ribonuclease HII [Kocuria rhizophila DC2201] gi|183580945|dbj|BAG29416.1| ribonuclease HII [Kocuria rhizophila DC2201] Length = 266 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 104/230 (45%), Gaps = 37/230 (16%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD--------------PNNIP 54 RP +LE + VAG+DEVGRGALAGP V ++LD P+ P Sbjct: 32 RPGLDLETELASSGARFVAGMDEVGRGALAGPASVGLVVLDVPRLLAGSGHDAAAPDPAP 91 Query: 55 ------FGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHA 107 G+ DSK +S +R L ++ + A ++ A ID I A A A Sbjct: 92 VSVPAWDGVRDSKALSAARRAVLAPRVATWAAGTAVGHAQPHEIDALGITAALRLAGLRA 151 Query: 108 VENL---QVIPRSALIDGRS-------------IPEDLPCQAFAVIKGDSISLSIAAASI 151 + + + ++DG P LP ++K D+ +S+AAASI Sbjct: 152 LAAVTSGGTPVDALILDGSHNWLEAPAVLGQEEDPVALPPVVRTLVKADARCVSVAAASI 211 Query: 152 IAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +AKV RD +M +++P Y + ++ GY +A H+ + G + HR ++ Sbjct: 212 VAKVERDAIMVELGQEHPAYEWGANKGYGSAAHRAALVTHGTTRHHRRSW 261 >gi|297156716|gb|ADI06428.1| ribonuclease HII [Streptomyces bingchenggensis BCW-1] Length = 243 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 74/202 (36%), Positives = 107/202 (52%), Gaps = 2/202 (0%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R V GIDEVGRGA AGPV V A + P G+ DSK +S K Sbjct: 14 EPPTHRVERSLRATTGAKIVVGIDEVGRGAWAGPVTVCAAVTGLRRPPAGLTDSKLLSPK 73 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KR L +++ + ++ AS + ID + A A A++ L V P + ++DG+ Sbjct: 74 KRTALAQELETWVTSYALGHASPEEIDALGMTAALRLAATRALDGLPVRPDAVILDGKHD 133 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + VIKGD +++AAAS+IAKV RD LM + D+ F + GYP+ H+ Sbjct: 134 YLGKPWKVRTVIKGDQSCVAVAAASVIAKVRRDTLMAELGAAHADFRFGDNAGYPSPAHR 193 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 + E GP+ HRL++ L L Sbjct: 194 AALTELGPTPYHRLSWAYLDGL 215 >gi|315226326|ref|ZP_07868114.1| ribonuclease HII 2 [Parascardovia denticolens DSM 10105] gi|315120458|gb|EFT83590.1| ribonuclease HII 2 [Parascardovia denticolens DSM 10105] Length = 250 Score = 179 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 108/230 (46%), Gaps = 36/230 (15%) Query: 10 PHFELEAMVRE----KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDS 60 P +++E + + + + G DEVGRG LAGPV+V A + +IP G+ DS Sbjct: 22 PSWQVEEALLQEADDRRPQWIIGCDEVGRGCLAGPVMVGACLFRAEDIPLLPIPAGLKDS 81 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKAT---------------LDAI 104 K ++ KKRE L + + + A ++ S ++ ID + I +A + A Sbjct: 82 KLLTPKKRESLLDPLRAWAAGTAVGSCDNRGIDSYGIMEALGAAAIQAIDQAVFGLIGAG 141 Query: 105 YHAVENLQVIPRSA-------LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTR 157 L L I D V+KGD +A AS+IAKVTR Sbjct: 142 DRVAVILDGPYDYISPAFRSLLAPQARIDPD-DMTVTTVVKGDRRCACVAGASVIAKVTR 200 Query: 158 DRLMRIAHKKYPD---YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 DR M ++P+ Y + + GY +A+H++ IKE+GPS HRL++ + Sbjct: 201 DRYMVDLADRHPEWEAYAWRKNKGYGSAEHREAIKEQGPSPYHRLSWHLV 250 >gi|294786711|ref|ZP_06751965.1| ribonuclease HII [Parascardovia denticolens F0305] gi|294485544|gb|EFG33178.1| ribonuclease HII [Parascardovia denticolens F0305] Length = 240 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 108/230 (46%), Gaps = 36/230 (15%) Query: 10 PHFELEAMVRE----KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDS 60 P +++E + + + + G DEVGRG LAGPV+V A + +IP G+ DS Sbjct: 12 PSWQVEEALLQEADDRRPQWIIGCDEVGRGCLAGPVMVGACLFRAEDIPLLPIPAGLKDS 71 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKAT---------------LDAI 104 K ++ KKRE L + + + A ++ S ++ ID + I +A + A Sbjct: 72 KLLTPKKRESLLDPLRAWAAGTAVGSCDNRGIDSYGIMEALGAAAIQAIDQAVFGLIGAG 131 Query: 105 YHAVENLQVIPRSA-------LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTR 157 L L I D V+KGD +A AS+IAKVTR Sbjct: 132 DRVAVILDGPYDYISPAFRSLLAPQARIDPD-DMTVTTVVKGDRRCACVAGASVIAKVTR 190 Query: 158 DRLMRIAHKKYPD---YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 DR M ++P+ Y + + GY +A+H++ IKE+GPS HRL++ + Sbjct: 191 DRYMVDLADRHPEWEAYAWRKNKGYGSAEHREAIKEQGPSPYHRLSWHLV 240 >gi|313680749|ref|YP_004058488.1| RNAse HII [Oceanithermus profundus DSM 14977] gi|313153464|gb|ADR37315.1| RNase HII [Oceanithermus profundus DSM 14977] Length = 197 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 98/203 (48%), Gaps = 28/203 (13%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-----------INDSKK 62 LE + + VAG+DE GRG DSK+ Sbjct: 2 LEREFWRQGLR-VAGVDEAGRG-------------ALAGPVVAAAVVLAPGRHPYRDSKR 47 Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 ++ ++RE+L + + A+ + + S +D+ + +AT A A+ L++ P++ + D Sbjct: 48 LTPRRREQLLDHLQRHALAWGVGACSAAEVDRLGVLRATHCAAQRALARLRIAPQALVTD 107 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + +LP A + ++ S S+AAASI+AKV RDR+M H++YP YGF H GY T Sbjct: 108 YLFLETELPL--LAPARAEAQSPSVAAASILAKVVRDRIMVGLHRRYPGYGFARHKGYGT 165 Query: 182 AKHQQVIKEKGPSCIHRLTFRPL 204 A+H + GP HR F P+ Sbjct: 166 AEHLACLARLGPCPQHRRRFAPV 188 >gi|270700822|ref|ZP_06223058.1| ribonuclease HII [Haemophilus influenzae HK1212] gi|270315846|gb|EFA27947.1| ribonuclease HII [Haemophilus influenzae HK1212] Length = 137 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 56/132 (42%), Positives = 80/132 (60%), Gaps = 1/132 (0%) Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A+ ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A Sbjct: 1 KEKALAWALGRAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQ 60 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 AV+KGDSI I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G Sbjct: 61 AVVKGDSIVAEISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAEFGTL 120 Query: 195 CIHRLTFRPLRN 206 HR +F P++ Sbjct: 121 PQHRRSFAPVKK 132 >gi|254391049|ref|ZP_05006257.1| ribonuclease HII [Streptomyces clavuligerus ATCC 27064] gi|294815520|ref|ZP_06774163.1| Ribonuclease [Streptomyces clavuligerus ATCC 27064] gi|326443870|ref|ZP_08218604.1| ribonuclease HII [Streptomyces clavuligerus ATCC 27064] gi|197704744|gb|EDY50556.1| ribonuclease HII [Streptomyces clavuligerus ATCC 27064] gi|294328119|gb|EFG09762.1| Ribonuclease [Streptomyces clavuligerus ATCC 27064] Length = 235 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 76/202 (37%), Positives = 113/202 (55%), Gaps = 2/202 (0%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R + +AG+DEVGRGA AGPV V A I P G+ DSK IS + Sbjct: 4 EPPTHTVERSIRARTGARIIAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLISPR 63 Query: 67 KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R+EL ++ ++ AS Q ID + A A A++ L V P + ++DG+ Sbjct: 64 RRDELAAELERWVTAHALGHASPQEIDDLGMTAALRLAACRALDGLPVRPEAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P VIKGD +++AAAS+IAKV RD LM +++ D+ F + GYP+ H+ Sbjct: 124 YLGAPWTVRTVIKGDRSCVAVAAASVIAKVRRDALMAELPQEFADFAFADNAGYPSPVHK 183 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 V++E+GP+ HRL++ L L Sbjct: 184 AVLEERGPTPYHRLSWAYLDAL 205 >gi|309790097|ref|ZP_07684670.1| ribonuclease H [Oscillochloris trichoides DG6] gi|308227822|gb|EFO81477.1| ribonuclease H [Oscillochloris trichoides DG6] Length = 207 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 73/211 (34%), Positives = 102/211 (48%), Gaps = 27/211 (12%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII---------------LDPNNIP 54 P E + AGIDE GRG ++ Sbjct: 3 PTITHEQAWHARGYSNCAGIDEAGRGCW----------AGPVVAAAVVLAPSVFQQPDLL 52 Query: 55 FGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQV 113 G+NDSK++ R L+ +I A+ + + ID + I AT A+ A+ +L Sbjct: 53 AGVNDSKQLDAATRGRLFGQIHHYALGVGVGIVPAYLIDAYGIVPATRLAMLSALLSLPC 112 Query: 114 IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 + LID ++P DL A+IKGD+ SLSIAAAS++AKVTRD LM+ A +P YGF Sbjct: 113 RVDALLIDALTLP-DLSLPQEALIKGDARSLSIAAASVVAKVTRDHLMQTADHVFPGYGF 171 Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +H GY TA HQ+ + G +HR TF+PL Sbjct: 172 AAHKGYGTAAHQRALAIHGSCALHRRTFQPL 202 >gi|78211866|ref|YP_380645.1| RNase HII [Synechococcus sp. CC9605] gi|97189422|sp|Q3AMU2|RNH2_SYNSC RecName: Full=Ribonuclease HII; Short=RNase HII gi|78196325|gb|ABB34090.1| Ribonuclease H [Synechococcus sp. CC9605] Length = 199 Score = 178 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 77/187 (41%), Positives = 107/187 (57%), Gaps = 7/187 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 VAG+DEVGRG L GPV AA++L+ + + G+ DSKK+S K+R L I S + Sbjct: 13 VAGVDEVGRGCLFGPVFAAAVVLEGSAAECLLKAGLTDSKKLSAKRRAALVPLIQSLCVA 72 Query: 82 S-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 S + AS + ID I AT A+ A++ L P L+DG VI GD Sbjct: 73 SALGQASAREIDACGIRVATERAMLRALQRLPQSPGLVLVDGNLPLRLWHGPQRTVIAGD 132 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S S +IAAAS++AK RD L+R ++P YG + H GY TA+H+Q + + GP+ +HR T Sbjct: 133 SRSAAIAAASVLAKEARDALIRRLSARFPGYGLERHAGYGTAQHRQSLIDSGPTPLHRHT 192 Query: 201 FRPLRNL 207 F L+ L Sbjct: 193 F--LKRL 197 >gi|149004282|ref|ZP_01829059.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS69] gi|147757776|gb|EDK64790.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS69] Length = 134 Score = 178 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 56/129 (43%), Positives = 82/129 (63%), Gaps = 2/129 (1%) Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I I +Q ID+ NI++AT A+ A+ L P LID + DLP ++IKGD Sbjct: 3 IGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLPISQTSIIKGD 60 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + G + IHR + Sbjct: 61 ANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTKLGVTPIHRTS 120 Query: 201 FRPLRNLSV 209 F P+++L + Sbjct: 121 FEPVKSLVL 129 >gi|325832929|ref|ZP_08165602.1| ribonuclease HII [Eggerthella sp. HGA1] gi|325485794|gb|EGC88258.1| ribonuclease HII [Eggerthella sp. HGA1] Length = 262 Score = 177 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 72/195 (36%), Positives = 106/195 (54%), Gaps = 7/195 (3%) Query: 12 FELEAMVR-EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 + E + E+ + G+DEVGRG LAGP+ V A++L G+NDSK++ + RE Sbjct: 60 YAFERALAAERGDGVIVGLDEVGRGPLAGPLAVGAVVLPSEPFIEGLNDSKQVKPEARER 119 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAV---ENLQVIPRSALIDGRSIP 126 + ++ + A+ ++ ID + + A A+ E + V P L+DG P Sbjct: 120 IAVQVKAVAVAWTVEYVEASDIDACGMTASLALAFRRAIRRIEEVGVRPDVVLLDGN--P 177 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 L + V+KGD SIAAASI+AKV RD LM ++YP+YGFD+ GY +A H + Sbjct: 178 MRLDEREVNVVKGDGKCASIAAASIVAKVERDALMCRYAEEYPEYGFDACKGYASAAHIE 237 Query: 187 VIKEKGPSCIHRLTF 201 IK G + IHR TF Sbjct: 238 AIKRYGLTPIHRATF 252 >gi|46200090|ref|YP_005757.1| ribonuclease HII [Thermus thermophilus HB27] gi|73917834|sp|Q72GR0|RNH2_THET2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|46197718|gb|AAS82130.1| ribonuclease HII [Thermus thermophilus HB27] Length = 203 Score = 177 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 72/200 (36%), Positives = 102/200 (51%), Gaps = 22/200 (11%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--------PFGINDSKKISH 65 LEA K + VAG+DE GRGA A P + + DSK +S Sbjct: 6 LEAPFWRKGL-LVAGLDEAGRGAWA----------GPIVVGVVVLPPGEYPFRDSKLLSP 54 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 + RE L EK+ A+ ++ A +D+ + KATL A A+ +L + P + + D Sbjct: 55 RARERLAEKVKEVALAFALGVAEAAEVDRLGVLKATLLAAERALLSLPLAPEALVTDYLP 114 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P LP + K D S ++AAASI+AKV RDR+M + YP YGF H GY T +H Sbjct: 115 LPTPLPLLSPP--KADEKSPTVAAASILAKVHRDRIMAELDRLYPGYGFARHKGYGTPEH 172 Query: 185 QQVIKEKGPSCIHRLTFRPL 204 Q+ + GPS +HR F P+ Sbjct: 173 QEALLALGPSPVHRKRFAPV 192 >gi|302542045|ref|ZP_07294387.1| ribonuclease HII [Streptomyces hygroscopicus ATCC 53653] gi|302459663|gb|EFL22756.1| ribonuclease HII [Streptomyces himastatinicus ATCC 53653] Length = 233 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 72/202 (35%), Positives = 109/202 (53%), Gaps = 2/202 (0%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 + P +E +R V G+DEVGRGA AGPV V A + P G+ DSK +S K Sbjct: 4 QPPTHSVERSLRATTGAKIVVGVDEVGRGAWAGPVTVCAAVTGLRRPPTGLTDSKLLSPK 63 Query: 67 KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R EL ++ S ++ +S + ID + A A A+E L V P + ++DG+ Sbjct: 64 RRTELAHELESWVTAHALGHSSPEEIDDLGMTAALRLAATRALEGLPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + VIKGD +++AAAS+IAKV RD LM + D+ F + GYP+ H+ Sbjct: 124 YLGAPWRVRTVIKGDQSCVAVAAASVIAKVRRDALMAELGGAHADFRFGDNAGYPSPVHR 183 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 ++++GP+ HRL++ L L Sbjct: 184 AALRDQGPTPHHRLSWAYLDGL 205 >gi|119025252|ref|YP_909097.1| ribonuclease HII [Bifidobacterium adolescentis ATCC 15703] gi|118764836|dbj|BAF39015.1| ribonuclease [Bifidobacterium adolescentis ATCC 15703] Length = 264 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 68/240 (28%), Positives = 106/240 (44%), Gaps = 43/240 (17%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--------DPNNIPFG 56 S+ P ++E + + G DEVGRG+LAGPV+V A + P +P G Sbjct: 28 SVSIVPTLDMERAIAASGYDVIVGFDEVGRGSLAGPVMVGAAAIRTCDLSGPSPLAVPDG 87 Query: 57 INDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP 115 + DSK ++ +RE ++E++ S A ++ SAS+ ID I A A A L Sbjct: 88 VADSKMLTEHRREAIFEELKSWCASWAVGSASNTEIDDWGISYALGVAALRA---LSEAE 144 Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIA---------------------- 153 IDG + + P + A++ G + ++ A + A Sbjct: 145 TRLGIDGNGLLDGRPVKVGAILDGPNDYITKALNTFDAPDVPVPAEVSTKVKGDRYCATV 204 Query: 154 -------KVTRDRLMRIAHKK--YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 KVTRDRLM + Y Y + + GY +A H+ I E GPS +HRL++ + Sbjct: 205 ATAAVIAKVTRDRLMVELGAQPQYEPYEWAHNKGYGSAAHRDAIAEFGPSDLHRLSWHLV 264 >gi|289644815|ref|ZP_06476868.1| Ribonuclease H [Frankia symbiont of Datisca glomerata] gi|289505371|gb|EFD26417.1| Ribonuclease H [Frankia symbiont of Datisca glomerata] Length = 208 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 70/181 (38%), Positives = 105/181 (58%), Gaps = 4/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREELYEKITSSA-IISI 83 AG+DE GRGA AGP+VVAA++L N + DSK++S + RE+++++I S A + Sbjct: 2 AGVDEAGRGACAGPLVVAAVVLPANGSRRLVDLADSKRLSPRLREQVFDEILSVAQAWAT 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 ID +H A + + AV L P L DG ++P L + AV+KGD + Sbjct: 62 VVIQSSEIDACGVHVANIAGMRRAVARLGRRPGYVLTDGFAVP-GLGVASTAVLKGDQVV 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +AAAS++AKVTRDR+M+ H ++P+Y F H GY TA H + GP HR+++ Sbjct: 121 ACVAAASVVAKVTRDRIMKDLHHRHPEYDFAQHKGYVTAGHAAALSAYGPCEQHRMSYVN 180 Query: 204 L 204 + Sbjct: 181 V 181 >gi|257791157|ref|YP_003181763.1| Ribonuclease H [Eggerthella lenta DSM 2243] gi|257475054|gb|ACV55374.1| Ribonuclease H [Eggerthella lenta DSM 2243] Length = 262 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 72/195 (36%), Positives = 105/195 (53%), Gaps = 7/195 (3%) Query: 12 FELEAMVR-EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 + E + E+ + G+DEVGRG LAGP+ V A++L G+NDSK++ + RE Sbjct: 60 YAFERALAAERGDGVIVGLDEVGRGPLAGPLAVGAVVLPSEPFIEGLNDSKQVKPEARER 119 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAV---ENLQVIPRSALIDGRSIP 126 + ++ + A+ ++ ID + + A A+ E V P L+DG P Sbjct: 120 IAVQVKAVAVAWTVEYVEASDIDACGMTASLALAFRRAIRRIEEAGVRPDVVLLDGN--P 177 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 L + V+KGD SIAAASI+AKV RD LM ++YP+YGFD+ GY +A H + Sbjct: 178 MRLDEREVNVVKGDGKCASIAAASIVAKVERDALMCRYAEEYPEYGFDACKGYASAAHIE 237 Query: 187 VIKEKGPSCIHRLTF 201 IK G + IHR TF Sbjct: 238 AIKRYGLTPIHRATF 252 >gi|50955107|ref|YP_062395.1| ribonuclease HII [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951589|gb|AAT89290.1| ribonuclease HII [Leifsonia xyli subsp. xyli str. CTCB07] Length = 226 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 73/207 (35%), Positives = 103/207 (49%), Gaps = 12/207 (5%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKIS 64 P P E + + + + +DEVGRGALAGPV V +++D IP G+ DSK +S Sbjct: 3 PVTPSLRFEKALYRQGVTSIVAVDEVGRGALAGPVAVGMVVIDTAVKRIPLGLRDSKLLS 62 Query: 65 HKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQ-----VIPRSA 118 RE L ++ ++ AS +D+H I + A A L+ V + Sbjct: 63 EPAREALEPACRRWSLFHAVGLASADEVDRHGIMRCLGLAGARAFAVLEEQGAPVHDSAL 122 Query: 119 LIDGR----SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174 ++DG ++ P + +K D S+AAAS+IAKV RDRLM P YG+ Sbjct: 123 ILDGNYDYLTLALTRPARVVTRVKADRDCASVAAASVIAKVHRDRLMIEHDADDPGYGWA 182 Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLTF 201 S+ GY T H I E GPS IHRLT+ Sbjct: 183 SNKGYSTPGHFAAIAELGPSAIHRLTW 209 >gi|154486645|ref|ZP_02028052.1| hypothetical protein BIFADO_00464 [Bifidobacterium adolescentis L2-32] gi|154084508|gb|EDN83553.1| hypothetical protein BIFADO_00464 [Bifidobacterium adolescentis L2-32] Length = 238 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 68/240 (28%), Positives = 106/240 (44%), Gaps = 43/240 (17%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--------DPNNIPFG 56 S+ P ++E + + G DEVGRG+LAGPV+V A + P +P G Sbjct: 2 SVSIVPTLDMERAIAASGYDVIVGFDEVGRGSLAGPVMVGAAAIRTCDLAGSSPLQVPDG 61 Query: 57 INDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP 115 + DSK ++ +RE ++E++ S A ++ SAS+ ID I A A A L Sbjct: 62 VADSKMLTEHRREAIFEELKSWCASWAVGSASNTEIDDWGISYALGIAALRA---LGQAE 118 Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIA---------------------- 153 IDG + + P + A++ G + ++ A + A Sbjct: 119 EKLGIDGDGMLDGKPVKVGAILDGPNDYITKALNTFDAPDVPVPAEVSTKVKGDRYCATV 178 Query: 154 -------KVTRDRLMRIAHKK--YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 KVTRDRLM + Y Y + + GY +A H+ I E GPS +HRL++ + Sbjct: 179 ATAAVIAKVTRDRLMVELGAQPQYEPYEWAHNKGYGSAAHRDAIAEFGPSDLHRLSWHLV 238 >gi|302537359|ref|ZP_07289701.1| ribonuclease HII [Streptomyces sp. C] gi|302446254|gb|EFL18070.1| ribonuclease HII [Streptomyces sp. C] Length = 236 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 72/205 (35%), Positives = 111/205 (54%), Gaps = 5/205 (2%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R +AG+DEVGRGA AGPV V A I P G+ DSK ++ K Sbjct: 4 EAPTHTVERSLRATTGAKVIAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLLTPK 63 Query: 67 KREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R+ L E + ++ AS + ID+ + A A A+E L + P + ++DG+ Sbjct: 64 RRDALLEVLEDWVTAHALGHASPEEIDELGMTAALRLAAVRALEALPMRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK---YPDYGFDSHVGYPTA 182 P + VIKGD +++AAAS+IAKV RDR+M + D+ F ++ GYP+ Sbjct: 124 YLGPPWRVRTVIKGDQSCIAVAAASVIAKVRRDRMMAGLGEPGDGVADFAFAANAGYPSP 183 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 H+ ++ +GP+ HRL++ L L Sbjct: 184 VHRAALEVRGPTAYHRLSWSYLDAL 208 >gi|326333667|ref|ZP_08199904.1| ribonuclease HII [Nocardioidaceae bacterium Broad-1] gi|325948573|gb|EGD40676.1| ribonuclease HII [Nocardioidaceae bacterium Broad-1] Length = 218 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 94/204 (46%), Gaps = 21/204 (10%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKREELYEKITS 77 + + +DEVGRGAL GPV + +++ P G+ DSK ++ + RE L K+ Sbjct: 3 RDGITHLGAVDEVGRGALCGPVSIGIVVISAATRTAPQGVRDSKLLTPEARETLAPKVRR 62 Query: 78 SAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC----- 131 A+ ++ A ID+ I A A A+ L V P + L+DG P Sbjct: 63 WAVDSAVGHALASEIDEVGIMAAMRLAGQRALSALDVRPDALLLDGNHNYLTPPAQEGLF 122 Query: 132 -------------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 +IK D ++AAASI+AK +RD LM H++YPDY + + G Sbjct: 123 GEVSAMVEEIEVPPVTTMIKADMKCAAVAAASILAKTSRDALMVALHEEYPDYAWADNKG 182 Query: 179 YPTAKHQQVIKEKGPSCIHRLTFR 202 Y H ++ GPS HR ++ Sbjct: 183 YSAPAHIAALERLGPSAYHRRSWS 206 >gi|291277271|ref|YP_003517043.1| ribonuclease HII [Helicobacter mustelae 12198] gi|290964465|emb|CBG40315.1| ribonuclease HII [Helicobacter mustelae 12198] Length = 243 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 61/192 (31%), Positives = 95/192 (49%), Gaps = 11/192 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG+L G + V+ + + GI DSKK + R+ L + + I Sbjct: 48 LCGIDEAGRGSLCGSLFVSGVACTKDLAQMLQIQGIKDSKKTTKNTRKNLANLLIHTPGI 107 Query: 82 S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136 I + + ID+ + + + ++NLQ ++DG + P + Sbjct: 108 HFCIIEKTAKEIDEKGLSCCMRECLQSIIKNLQSFTSHFIMDGNTTFGFHPPPPLYLKTL 167 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD++ I+AAS++AK +D M K YP+YGF SH GY T+ H IK GP+ Sbjct: 168 IKGDALLPQISAASVLAKYAKDCEMMHLDKIYPNYGFASHSGYGTSAHIAQIKALGPTKE 227 Query: 197 HRLTFRPLRNLS 208 HR F L++L+ Sbjct: 228 HRRNF--LKDLT 237 >gi|78779978|ref|YP_398090.1| RNase HII [Prochlorococcus marinus str. MIT 9312] gi|97189158|sp|Q318P1|RNH2_PROM9 RecName: Full=Ribonuclease HII; Short=RNase HII gi|78713477|gb|ABB50654.1| RNase HII [Prochlorococcus marinus str. MIT 9312] Length = 205 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 98/180 (54%), Gaps = 5/180 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-SAII 81 GIDEVGRGA+ GPV A ++L N FG+ DSKK++ KKR+ L KI S+ Sbjct: 19 VGIDEVGRGAVFGPVFSAVVVLTEKNKFILKQFGVKDSKKLTPKKRKLLLPKILLLSSDY 78 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I +S + ID I AT ++ A++ L+ P ++DG + ++ GDS Sbjct: 79 GIGQSSAREIDMLGIRVATELSMIRALKKLKEKPSEIIVDGPLLLRPWKGIQKNIVSGDS 138 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +IA+ASI+AKV RD LM KKY Y + GY T +H IK+ G + +HR +F Sbjct: 139 KITAIASASIVAKVARDNLMERLEKKYSGYLIFKNKGYGTREHFSNIKKNGITNLHRKSF 198 >gi|118475400|ref|YP_891226.1| ribonuclease HII [Campylobacter fetus subsp. fetus 82-40] gi|118414626|gb|ABK83046.1| ribonuclease HII [Campylobacter fetus subsp. fetus 82-40] Length = 189 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 8/183 (4%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSS 78 M + GIDE GRGALAG +VVA + P I G++DSKK++ +KREE++ + Sbjct: 1 MAKICGIDEAGRGALAGELVVAGCVFKPKFKKEIIKLGLSDSKKLTEQKREEIFLNLEKM 60 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + + + +DK + A+ V + + + DG + ++K Sbjct: 61 SDYLVVYFRNTIVDKIGLSDCLRRALN--VIKMHFNECNFIYDGNCDYGVKNIK--TIVK 116 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 DS ++AASIIAKV+RDR MR K YPD+G+ H GY H + +K+ G + + R Sbjct: 117 ADSSVPQVSAASIIAKVSRDRQMRRFDKIYPDFGYAKHKGYGVKAHIEALKQHGSNELTR 176 Query: 199 LTF 201 L+F Sbjct: 177 LSF 179 >gi|126697031|ref|YP_001091917.1| ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9301] gi|166226635|sp|A3PEZ1|RNH2_PROM0 RecName: Full=Ribonuclease HII; Short=RNase HII gi|126544074|gb|ABO18316.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9301] Length = 205 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 99/180 (55%), Gaps = 5/180 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-SAII 81 GIDEVGRG++ GPV A + L N G+ DSKK++ KKR+ L KI S+ Sbjct: 19 VGIDEVGRGSIFGPVFSAVVELTEKNKFTLKKLGVTDSKKLTPKKRKLLLPKILLLSSDY 78 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I +S + IDK I AT ++ A++ L+ P L+DG + + GDS Sbjct: 79 GIGQSSAREIDKLGIRVATELSMIRALKKLKKKPSELLVDGPLLLRPWKGTQKNIESGDS 138 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +SIA+ASI+AKV+RD LM +KY Y + GY T +H +IK+ G + +HR +F Sbjct: 139 KFISIASASIVAKVSRDNLMVRLERKYSGYLIFKNKGYGTREHLSLIKKNGITKLHRKSF 198 >gi|254527238|ref|ZP_05139290.1| ribonuclease HII [Prochlorococcus marinus str. MIT 9202] gi|221538662|gb|EEE41115.1| ribonuclease HII [Prochlorococcus marinus str. MIT 9202] Length = 205 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 74/209 (35%), Positives = 113/209 (54%), Gaps = 10/209 (4%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSK 61 + E+ +L+ + + + GIDEVGRGA+ GPV A ++L N G+ DSK Sbjct: 1 MQEKKEEDLQQALNKVSE---VGIDEVGRGAIFGPVFSAVVVLTEKNKFLLKQLGVKDSK 57 Query: 62 KISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K++ KKR+ L KI S+ I +S + ID I AT ++ A++ L+ P ++ Sbjct: 58 KLTPKKRKFLVPKILLLSSDYGIGQSSVKEIDNLGIRVATELSMIRALKKLKEKPSELIV 117 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG + ++ GDS +SIA+ASIIAKV+RD LM KKY Y + GY Sbjct: 118 DGPLLLRPWSGTQKNIVSGDSKFISIASASIIAKVSRDNLMMKLEKKYSGYLIFKNKGYG 177 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209 T +H +IK G + +HR +F L+ L++ Sbjct: 178 TREHLSLIKRNGVTNLHRKSF--LKKLNL 204 >gi|317488112|ref|ZP_07946688.1| ribonuclease HII [Eggerthella sp. 1_3_56FAA] gi|316912784|gb|EFV34317.1| ribonuclease HII [Eggerthella sp. 1_3_56FAA] Length = 262 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 71/195 (36%), Positives = 104/195 (53%), Gaps = 7/195 (3%) Query: 12 FELEAMVRE-KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 + E + + + G+DEVGRG LAGP+ V A++L G+NDSK++ + RE Sbjct: 60 YAFERALAAGRGDGVIVGLDEVGRGPLAGPLAVGAVVLPAEPFIEGLNDSKQVKPEVRER 119 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAV---ENLQVIPRSALIDGRSIP 126 + ++ + A+ ++ ID + + A A+ E V P L+DG P Sbjct: 120 IAVQVKAVAVAWTVEYVEASDIDACGMTASLALAFRRAIRRIEEAGVRPDVVLLDGN--P 177 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 L + V+KGD SIAAASI+AKV RD LM ++YP+YGFD+ GY +A H + Sbjct: 178 MRLDEREVNVVKGDGKCASIAAASIVAKVERDALMCRYAEEYPEYGFDACKGYASAAHIE 237 Query: 187 VIKEKGPSCIHRLTF 201 IK G + IHR TF Sbjct: 238 AIKRYGLTPIHRATF 252 >gi|163839835|ref|YP_001624240.1| ribonuclease HII [Renibacterium salmoninarum ATCC 33209] gi|162953311|gb|ABY22826.1| ribonuclease HII [Renibacterium salmoninarum ATCC 33209] Length = 217 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 94/204 (46%), Gaps = 23/204 (11%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREELYEKITSSA 79 + VAG DEVGRGALAGPV V +++D + G+ DSK +S ++RE L I A Sbjct: 4 GIRFVAGADEVGRGALAGPVSVGMVVVDASAQKPLAGVKDSKLLSAQERESLVPLIKHWA 63 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSI---------- 125 + ++ AS ID + A A A L V + ++DG Sbjct: 64 VGHAVGHASAAEIDAGGLTSALRLAGTRAWNQLLAAGVRAETVILDGNHNWLASAQLSIF 123 Query: 126 -------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + IK D LS+AAAS++AKV RD ++ P +G+ + G Sbjct: 124 DTPTADEELGVDVPVQTKIKADLSCLSVAAASVLAKVERDAILIELDAANPQFGWKINKG 183 Query: 179 YPTAKHQQVIKEKGPSCIHRLTFR 202 Y TA H+ I G S HR+++R Sbjct: 184 YATASHRNAIDLHGASQWHRMSWR 207 >gi|315452719|ref|YP_004072989.1| ribonuclease HII [Helicobacter felis ATCC 49179] gi|315131771|emb|CBY82399.1| ribonuclease HII [Helicobacter felis ATCC 49179] Length = 195 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 61/186 (32%), Positives = 88/186 (47%), Gaps = 10/186 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG G + VA + D N + + +SK++S KR E +I I Sbjct: 2 ILGIDEAGRGCWCGSLFVAGVSCDQNVASAFVRLELKESKQLSRTKRFEFATQIIQDTRI 61 Query: 82 --SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF---AV 136 + S S ID + +AI V L I + +DG ++ + A+ Sbjct: 62 TSVVVSKSAPEIDHKGLSVCMQEAITEIVSKLPTI-KHVRLDGNTLFKLEFAHLESFEAI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA ASI+AK +DR M + ++YP+YGF H GY T H I + G Sbjct: 121 IKGDDKIPQIAMASILAKAHKDREMSVLDERYPEYGFARHCGYGTCTHALAIAKYGLIQE 180 Query: 197 HRLTFR 202 HR +F+ Sbjct: 181 HRKSFK 186 >gi|29469217|gb|AAO65330.1| putative ribonuclease HII [Streptomyces murayamaensis] Length = 236 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 75/205 (36%), Positives = 108/205 (52%), Gaps = 5/205 (2%) Query: 8 ERPHFELEAMVRE-KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R +AG+DEVGRGA AGPV V A I P G+ DSK IS K Sbjct: 4 EPPTHTVERSIRATTGYKIIAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLISPK 63 Query: 67 KREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R EL ++ S ++ +S Q ID+ + A A A++ L V P + ++DG+ Sbjct: 64 RRLELAGELESWVTAYALGHSSPQEIDELGMTAALRLAAVRALDGLPVKPEAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA---HKKYPDYGFDSHVGYPTA 182 P VIKGD +++AAAS+IAKV RD +M + +GF + GYP+ Sbjct: 124 YLGDPWWVRTVIKGDQSCVAVAAASVIAKVRRDAMMAELGGAAGECAAFGFADNAGYPSP 183 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 H+ + E GP+ HRL++ L L Sbjct: 184 THKTALVEWGPTPYHRLSWSYLDAL 208 >gi|69246757|ref|ZP_00604105.1| Ribonuclease H [Enterococcus faecium DO] gi|68195111|gb|EAN09571.1| Ribonuclease H [Enterococcus faecium DO] Length = 151 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 56/126 (44%), Positives = 79/126 (62%), Gaps = 2/126 (1%) Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I I Q ID NI++A+ A+ AVE L ++P LID ++ DLP Q +IKGD Sbjct: 25 IGIGIVDQQTIDDVNIYEASKLAMIQAVEKLSIVPSYLLIDAMTL--DLPIQQEKIIKGD 82 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + S+SIAAASIIAKV RD+LM+ YP YGF + GY T +H + ++ +G + IHR + Sbjct: 83 ARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGYGTKEHLEGLERQGITPIHRKS 142 Query: 201 FRPLRN 206 F P++ Sbjct: 143 FAPVKK 148 >gi|86742269|ref|YP_482669.1| ribonuclease HII [Frankia sp. CcI3] gi|123764526|sp|Q2J702|RNH2_FRASC RecName: Full=Ribonuclease HII; Short=RNase HII gi|86569131|gb|ABD12940.1| Ribonuclease H [Frankia sp. CcI3] Length = 240 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 73/196 (37%), Positives = 109/196 (55%), Gaps = 4/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKRE 69 F E + + PVAG+DE GRGA AGP+V+AA+IL P + DSK ++ + RE Sbjct: 15 FGYERALNRHGLGPVAGVDEAGRGACAGPLVIAAVILAPEARQRLARLADSKLLTEQIRE 74 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 ++E + ++A S S ID+ +H A + + AV L P L DG ++ Sbjct: 75 SVFEDVMAAAAAWSTVVISAAEIDRVGLHVANITGMRRAVARLSARPGYVLTDGFAV-AG 133 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 ++ AV+KGD + +AAAS++AKVTRDR+MR H +Y +Y F H GY TA H + Sbjct: 134 FGVESLAVVKGDRVVACVAAASVVAKVTRDRIMRALHTRYAEYDFAQHKGYVTAAHAAAL 193 Query: 189 KEKGPSCIHRLTFRPL 204 GP HR+++ + Sbjct: 194 ARCGPCDEHRMSYVNV 209 >gi|317010006|gb|ADU80586.1| ribonuclease HII [Helicobacter pylori India7] Length = 204 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 65/188 (34%), Positives = 94/188 (50%), Gaps = 11/188 (5%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L +KI + + Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCSEKTALEFLKMGLKDSKKLSKKKRFFLEDKIKTHGEMGF 63 Query: 83 -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138 + S ID + AI +EN + IDG + + E P +IK Sbjct: 64 FVVKKSANEIDSLGLGACLKLAIQEILENACSLANEIKIDGNTAFGLNERYP-NIQTIIK 122 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD IA AS++AK +DR MR H + +YG+D + GY T +H + I + G + HR Sbjct: 123 GDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAIIKLGVTPFHR 182 Query: 199 LTFRPLRN 206 +F L+N Sbjct: 183 HSF-TLKN 189 >gi|75764884|ref|ZP_00744243.1| Ribonuclease HII [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74487629|gb|EAO51486.1| Ribonuclease HII [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 167 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 70/167 (41%), Positives = 102/167 (61%), Gaps = 4/167 (2%) Query: 42 VVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKAT 100 + AA+ + + DSKK+S KRE Y++I AI I + S Q ID NI++AT Sbjct: 1 MTAAVSF-QRFLYSRLYDSKKLSEAKRERFYDEIKVQAIAIGVGIVSPQVIDDINIYQAT 59 Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160 A+ AV L P+ LID +P P ++IKGD+ S+SI+AASIIAKVTRDR+ Sbjct: 60 KQAMLDAVAYLSCTPQHLLIDAMKLPT--PIPQTSIIKGDAKSISISAASIIAKVTRDRM 117 Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 M+ +KYP+YGF+ H+GY T +H + I+ G HR +F P++++ Sbjct: 118 MKELGEKYPEYGFEQHMGYGTKQHLEAIEVHGVLDEHRKSFAPIKDM 164 >gi|284045128|ref|YP_003395468.1| ribonuclease H [Conexibacter woesei DSM 14684] gi|283949349|gb|ADB52093.1| Ribonuclease H [Conexibacter woesei DSM 14684] Length = 226 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 75/198 (37%), Positives = 106/198 (53%), Gaps = 12/198 (6%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKIS 64 F + + VAG DE GRG LAGP+V AA++ D I +NDSK+ + Sbjct: 23 FAFDRDL---GARFVAGADEAGRGCLAGPLVAAAVMFDYERITRSDLRALSALNDSKQQT 79 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 ++RE +Y I A +++ S ID+ +H L A+ A+ + L DG Sbjct: 80 AERREAIYPVILRVATRVAVISRCAPGIDRRGLHVTNLAALRDALARVACDGCICLSDGF 139 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + DL AVI GD+ S SIAAAS++AKVTRDR M A +P + F SHVGY T + Sbjct: 140 RV-ADLGHDQRAVIGGDARSASIAAASVVAKVTRDRFMHRADVLHPGWEFASHVGYATPE 198 Query: 184 HQQVIKEKGPSCIHRLTF 201 H+ I+ G + +HRL+F Sbjct: 199 HRAAIERLGITPLHRLSF 216 >gi|170781194|ref|YP_001709526.1| ribonuclease HII [Clavibacter michiganensis subsp. sepedonicus] gi|169155762|emb|CAQ00883.1| ribonuclease HII [Clavibacter michiganensis subsp. sepedonicus] Length = 219 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 73/204 (35%), Positives = 103/204 (50%), Gaps = 12/204 (5%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAIILDPNNIPFGINDSKKISHKK 67 P FE+E + V G DEVGRGALAGPV V AA+ D + P G+ DSK +S K+ Sbjct: 6 PTFEIEHELLGAGAALVIGCDEVGRGALAGPVAVGMAAVGPDADAFPVGLRDSKMLSEKR 65 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL------- 119 RE L+ +++ A ++ AS + +D I A A+ L + L Sbjct: 66 REALHPLVSAWAGHSAVGMASAEEVDALGITACLGLAGRRALVELHHLGVPLLDSVVLLD 125 Query: 120 --IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 D + P +K D S+AAAS++AKV RDRLM H++ P+YG+ + Sbjct: 126 GSHDWLTPALVHPVPVRLRVKADRDCASVAAASVLAKVHRDRLMAAWHEESPEYGWAGNK 185 Query: 178 GYPTAKHQQVIKEKGPSCIHRLTF 201 GY + H VI+ G S IHR T+ Sbjct: 186 GYGSPAHLDVIRANGASRIHRRTW 209 >gi|219121434|ref|XP_002185941.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|209582790|gb|ACI65411.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 194 Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 68/195 (34%), Positives = 105/195 (53%), Gaps = 17/195 (8%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSS--- 78 V G DE G G +AGPVV A+ + N G++DSK +S K RE +YE I + Sbjct: 1 VIGSDESGSGCIAGPVVTASCCVRDNAADGLWIDGVDDSKSLSTKDRERIYEAIVQNPSR 60 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENL---------QVIPRSALIDGRSIPEDL 129 + SI S ID+ + ATL+ ++E++ P +++DG P+ Sbjct: 61 YLWSIQERSAAEIDEQSATNATLNCFQDSIEDVVSQLRAEYPHCQP-YSIVDGHRSPKVD 119 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C + +GD+ ++A ASI+A+VTRDR M +A KYP Y FD + GYP+ H +++ Sbjct: 120 GCTSRPWKQGDAYVYTVALASILARVTRDRHMALAAVKYPLYDFDRNGGYPSRAHTEILH 179 Query: 190 EKGPSCIHRLTFRPL 204 + G S IHR + +P+ Sbjct: 180 QHGYSPIHRQSCKPV 194 >gi|237750687|ref|ZP_04581167.1| ribonuclease HII [Helicobacter bilis ATCC 43879] gi|229373777|gb|EEO24168.1| ribonuclease HII [Helicobacter bilis ATCC 43879] Length = 207 Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 58/195 (29%), Positives = 93/195 (47%), Gaps = 14/195 (7%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYE 73 NM + GIDE GRG +AG + +A+++LD + I DSK+++ +R+E + Sbjct: 6 YWAINMALICGIDEAGRGCVAGSLFIASVMLDECYFESFKKLDIRDSKQLTQTQRQERAD 65 Query: 74 KITSS-----AIISISSASHQYIDKHNIHKATLDAIYHAVENLQ-VIPRSALIDGRSIPE 127 I + I S ID + + + + + + +S + DG + Sbjct: 66 SIQEFLREHGGRVKIVSFDSVNIDSKGLGQCMQMGLKELLLHAKKHQCKSIIFDGNT--- 122 Query: 128 DLPCQAF-AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + Q +IKGDS + I+AASI+AK +D M H YP Y S+ GY T H + Sbjct: 123 NFGVQEIDTLIKGDSKHVLISAASILAKTNKDSEMLTLHDLYPQYNLKSNKGYLTKAHIE 182 Query: 187 VIKEKGPSCIHRLTF 201 I + G S IHR ++ Sbjct: 183 SIAKHGYSPIHRKSY 197 >gi|210135480|ref|YP_002301919.1| ribonuclease HII [Helicobacter pylori P12] gi|238056778|sp|B6JNG1|RNH2_HELP2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|210133448|gb|ACJ08439.1| ribonuclease hII [Helicobacter pylori P12] Length = 204 Score = 171 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 63/190 (33%), Positives = 95/190 (50%), Gaps = 11/190 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG LAG + VA + + + G+ DSKK+S KKR L +KI + + Sbjct: 2 ILGIDEAGRGCLAGSLFVAGVACNDQTALELLKMGLKDSKKLSLKKRFFLEDKIKTHGKV 61 Query: 82 S--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAV 136 + S ID + AI +EN + + IDG + + + P + Sbjct: 62 KFFVVKKSANEIDNLGLGACLKLAIQEILENNRSLANEIKIDGNTAFGLNKRYP-NIQTI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK +DR M H + +YG+D + GY T +H + I + G + Sbjct: 121 IKGDETIAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAITKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRHSF-TLKN 189 >gi|297520198|ref|ZP_06938584.1| ribonuclease HII [Escherichia coli OP50] Length = 128 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 54/123 (43%), Positives = 70/123 (56%), Gaps = 1/123 (0%) Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L + P LIDG P+ LP + AV+KGDS Sbjct: 1 GRAEPYEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPK-LPMPSMAVVKGDSRV 59 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P Sbjct: 60 PEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGP 119 Query: 204 LRN 206 ++ Sbjct: 120 VKR 122 >gi|15645936|ref|NP_208115.1| ribonuclease HII [Helicobacter pylori 26695] gi|2500560|sp|P56121|RNH2_HELPY RecName: Full=Ribonuclease HII; Short=RNase HII gi|2314491|gb|AAD08367.1| ribonuclease HII (rnhB) [Helicobacter pylori 26695] Length = 209 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 11/188 (5%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG LAG + VA + + + G+ DSKK+S KKR L KI + + Sbjct: 9 GIDEAGRGCLAGSLFVAGVACNEKTALEFLKMGLKDSKKLSLKKRFFLEYKIKTHGEVGF 68 Query: 83 -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIK 138 + S ID + A+ +EN + IDG + + + P +IK Sbjct: 69 FVVKKSANEIDSLGLGACLKLAVQEILENGCSLVDEIKIDGNTAFGLNKRYPHIQ-TIIK 127 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD IA AS++AK +DR M H + +YG+D + GY T +H + I + G + HR Sbjct: 128 GDETIAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHR 187 Query: 199 LTFRPLRN 206 +F L+N Sbjct: 188 HSF-TLKN 194 >gi|148272555|ref|YP_001222116.1| ribonuclease HII [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830485|emb|CAN01420.1| rnhB [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 219 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 70/204 (34%), Positives = 103/204 (50%), Gaps = 12/204 (5%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKK 67 P +LE + V G DEVGRGALAGPV V ++ P+ + P G+ DSK +S K+ Sbjct: 6 PTLDLEHELLHAGAALVIGCDEVGRGALAGPVAVGMAVVGPDAVGFPPGLRDSKMLSEKR 65 Query: 68 REELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQV-----IPRSALID 121 RE L+ + S + AS +D+ I A A+ L + L+D Sbjct: 66 REALHPVVAGWVRHSAVGMASAAEVDELGITACLGLAGRRALVELHHAGVPLLDSVVLLD 125 Query: 122 GRS--IPEDL--PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 G + L P +K D S+AAAS++AKV RDR+M + H+ P+YG+ + Sbjct: 126 GAHDWLTPHLAHPVPVRLRVKADRDCASVAAASVLAKVERDRMMAVWHEDLPEYGWAGNK 185 Query: 178 GYPTAKHQQVIKEKGPSCIHRLTF 201 GY +A H I+ +G S +HR T+ Sbjct: 186 GYGSAAHLDAIRARGASPLHRRTW 209 >gi|108804231|ref|YP_644168.1| RNase HII [Rubrobacter xylanophilus DSM 9941] gi|108765474|gb|ABG04356.1| RNase HII [Rubrobacter xylanophilus DSM 9941] Length = 204 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 69/198 (34%), Positives = 105/198 (53%), Gaps = 5/198 (2%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 ER + +A PVAG+DE GRGALAGP+V AA+ILD + G++DSK+++ Sbjct: 9 ERELYAFDAAWAASRRPPVAGVDEAGRGALAGPLVAAAVILD-GGVVEGLDDSKRLARPA 67 Query: 68 REELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE L ++ SA S+ +ID+H + A + + AV L L DG Sbjct: 68 RERLLPEVLGSAEALSVVVFPAWWIDEHGLGAANREVLRRAVGRLLPRAGCCLADGN--- 124 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 L + + D S ++AAAS++AKV RD M +P YGF+ + GY T +H++ Sbjct: 125 LRLGPRIDCLPGADGRSAAVAAASVVAKVLRDAAMSALGAAHPGYGFERNCGYGTPEHRR 184 Query: 187 VIKEKGPSCIHRLTFRPL 204 + GP +HRL++ + Sbjct: 185 ALARLGPCRVHRLSYAGV 202 >gi|225351148|ref|ZP_03742171.1| hypothetical protein BIFPSEUDO_02736 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158604|gb|EEG71846.1| hypothetical protein BIFPSEUDO_02736 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 249 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 107/246 (43%), Gaps = 54/246 (21%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI---------------- 53 P +LE + E+ + G DEVGRG+LAGPV+V A + ++ Sbjct: 7 PTLDLERAIAEQGYDVIVGFDEVGRGSLAGPVMVGAAAIWARDLDGPAGASQGGSQESSH 66 Query: 54 ---PFGINDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVE 109 P G+ DSK ++ KRE +++++ S A ++ +AS++ ID+ I A A A+ Sbjct: 67 LEVPKGVADSKMLTEHKREAIFDELKSWCASWAVGAASNKEIDEWGISHALGVAALRALA 126 Query: 110 NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIA-----------KV--- 155 + IDG + P + A++ G + ++ + A KV Sbjct: 127 QAEAK---LGIDGNGMLSGKPVKVGAILDGPNDYITKTLNTFDAPEVPVPANVTTKVKGD 183 Query: 156 ---------------TRDRLMRIAHKK--YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 TRDRLM + Y Y + + GY +A H+ I E GPS +HR Sbjct: 184 RYCVAVAAAAVIAKVTRDRLMVELGAQPQYEPYEWAHNKGYGSAAHRDAIAEFGPSDLHR 243 Query: 199 LTFRPL 204 L++ + Sbjct: 244 LSWHLV 249 >gi|2352484|gb|AAC46185.1| RNAseH II [Lactococcus lactis subsp. cremoris MG1363] Length = 166 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 63/164 (38%), Positives = 96/164 (58%), Gaps = 3/164 (1%) Query: 45 AIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDA 103 A+IL N G+NDSKK+ K + +I A+ I + + ID+ NI++AT A Sbjct: 1 AVILPKNCKIRGLNDSKKVPKSKHHAILSEIQEKALAIGVGIVDAEKIDEVNIYEATKIA 60 Query: 104 IYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163 + AV L + P LID + DLP +I GD+ S SIAAASI+AKVTRD +M+ Sbjct: 61 MIQAVSKLSLKPEHLLIDAMVL--DLPIAQTKIIHGDARSASIAAASIVAKVTRDEMMKD 118 Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 ++P+Y F+ + GY TAKH + + G + IHR ++ P++++ Sbjct: 119 FALEFPEYDFEHNAGYGTAKHLAALTKYGITRIHRKSYEPIKSM 162 >gi|283782847|ref|YP_003373601.1| ribonuclease HII [Gardnerella vaginalis 409-05] gi|298253324|ref|ZP_06977116.1| ribonuclease HII [Gardnerella vaginalis 5-1] gi|283442005|gb|ADB14471.1| ribonuclease HII [Gardnerella vaginalis 409-05] gi|297532719|gb|EFH71605.1| ribonuclease HII [Gardnerella vaginalis 5-1] Length = 247 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 112/240 (46%), Gaps = 42/240 (17%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII----LDPNNIPFGIN 58 ++IP P F+ E + + V G+DEVGRG+LAGPV+V AA+I + N +P G+ Sbjct: 6 SNIPLVPSFKYEQDLLCEGYDWVIGLDEVGRGSLAGPVMVGAAVIGIKQVKENYMPEGLA 65 Query: 59 DSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVEN------- 110 DSK +S K+REELYE + ++ S ++ ID+ I A A A+ Sbjct: 66 DSKLLSEKRREELYEPLQKWCTTWAVGSCTNTEIDEWGISYALGVAALKAISKVEEDIKK 125 Query: 111 ------------------------LQVIPRSALIDGRSIPEDL---PCQAFAVIKGDSIS 143 L + P + ++K D Sbjct: 126 LSFSVNANTRENTRENSNFRIAAILDGPCDYIDKVANTFDAPYIPEPVKVHTLVKADRQC 185 Query: 144 LSIAAASIIAKVTRDRLMRIAHK--KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 S+AAA+++AKVTRD LM K KY Y + S+ GY + H+ IK+ GPS +HRL++ Sbjct: 186 ASVAAAAVLAKVTRDNLMVSLAKNPKYAAYDWASNKGYGSLAHRNAIKKVGPSDLHRLSW 245 >gi|224437531|ref|ZP_03658489.1| ribonuclease HII [Helicobacter cinaedi CCUG 18818] gi|313143983|ref|ZP_07806176.1| ribonuclease HII [Helicobacter cinaedi CCUG 18818] gi|313129014|gb|EFR46631.1| ribonuclease HII [Helicobacter cinaedi CCUG 18818] Length = 239 Score = 167 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 98/233 (42%), Gaps = 52/233 (22%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITS---SA 79 +AGIDE GRG + G + VA +I NI FG DSKK+S K+RE +Y+ + Sbjct: 1 MWLAGIDEAGRGCICGALFVAGVIGREENIAHFGAKDSKKLSPKQRERIYQTLLESQHKG 60 Query: 80 IIS--ISSASHQYIDKHNIHKATLDAIYHAV----------------------------E 109 I ++ IDK + A + I + + Sbjct: 61 EIGLFVAQIEAWEIDKFGLSIAMKNGIEQILCRIADFATLQNLIGQNVEQNTAKHNLLEQ 120 Query: 110 NLQVIP----------RSALIDGR-----SIPEDLPCQ---AFAVIKGDSISLSIAAASI 151 +++ P + ++DG IP L ++K D I ++ ASI Sbjct: 121 DVEQNPTDSTDSKNALQEIIMDGNTTFQAKIPHILTQSGVGVQTLVKADDIMPIVSCASI 180 Query: 152 IAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +AKV++DR M K YP Y + GY T +H++ I + G HR +F+ L Sbjct: 181 VAKVSKDRQMHELDKLYPQYFLAKNKGYGTLQHKKAIAKNGYCPHHRKSFKIL 233 >gi|57505767|ref|ZP_00371693.1| ribonuclease HII [Campylobacter upsaliensis RM3195] gi|57016040|gb|EAL52828.1| ribonuclease HII [Campylobacter upsaliensis RM3195] Length = 174 Score = 167 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 67/178 (37%), Positives = 105/178 (58%), Gaps = 8/178 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + GIDE GRGALAGP+ +AA +L P N + DSKK++ KKR++LY +I S++ I Sbjct: 2 LVGIDEAGRGALAGPLFIAACELLKPLNE---LKDSKKLNEKKRKKLYGEIISNSNYLIL 58 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + S+ ID + K + + +L + + DG + L + +IK DS+ Sbjct: 59 AFSNAQIDTLGLSKCLQKGLE--IIHLHFEKQRKIFDGNTNYGVLGIE--NLIKADSLIA 114 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 ++AASI+AKV+RD++M+ KYP YGF+ H Y T H++ I + G +HRL+F+ Sbjct: 115 EVSAASILAKVSRDKVMQFLALKYPQYGFEIHKAYGTKAHRESIAKYGACKLHRLSFK 172 >gi|227875952|ref|ZP_03994075.1| possible ribonuclease H [Mobiluncus mulieris ATCC 35243] gi|227843484|gb|EEJ53670.1| possible ribonuclease H [Mobiluncus mulieris ATCC 35243] Length = 271 Score = 167 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 101/226 (44%), Gaps = 51/226 (22%) Query: 25 PVAGIDEVGRGALAGPV-----VVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 V G+DEVGRGALAGPV VV+A L P G+NDSK ++ ++RE L + I S Sbjct: 47 LVGGMDEVGRGALAGPVCIGVTVVSATELAAGFPP-GLNDSKALTARRREALVQPIQSWV 105 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGR------------ 123 +I A++ ID+ I A A + A+ L +P+ L+DG Sbjct: 106 KDFAIGEATNMEIDEMGIMAAMRLAGWRALNQLDARGHLPQKLLLDGNVDYLQAEHQANL 165 Query: 124 --------------------------SIPEDLPC-QAFAVIKGDSISLSIAAASIIAKVT 156 P P + ++K D + ++A A+++AKV Sbjct: 166 FDAQWHLMNPAQPAQPAQPAMGTTPAHNPPPAPLLKVQTLVKADQHAATVAGAAVLAKVY 225 Query: 157 RDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 RD M P YG+ +VGY T H++ I GPS HR T++ Sbjct: 226 RDAFMSRLED--PGYGWSHNVGYGTKAHREAISRLGPSRWHRHTWK 269 >gi|306823660|ref|ZP_07457035.1| ribonuclease HII [Bifidobacterium dentium ATCC 27679] gi|309802965|ref|ZP_07697066.1| ribonuclease HII [Bifidobacterium dentium JCVIHMP022] gi|304553367|gb|EFM41279.1| ribonuclease HII [Bifidobacterium dentium ATCC 27679] gi|308220432|gb|EFO76743.1| ribonuclease HII [Bifidobacterium dentium JCVIHMP022] Length = 234 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 113/226 (50%), Gaps = 35/226 (15%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--------DPNNIPFGINDSK 61 P +LE + + + G DEVGRG+LAGPV+V A + D ++P G+ DSK Sbjct: 7 PTLQLEREIAARGYDVIVGFDEVGRGSLAGPVMVGAAAIRTADLDGPDALDVPEGVADSK 66 Query: 62 KISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 ++ +RE ++E + S A ++ ++S+ ID+ I A A A++ ++ A Sbjct: 67 MLTEHRRETIFESLKSWSASWAVGASSNAEIDEWGISYALGVAALRALDEVERELGIAD- 125 Query: 121 DGRSI--------PEDL---------------PCQAFAVIKGDSISLSIAAASIIAKVTR 157 DGRSI P D P +KGD ++A A++IAKVTR Sbjct: 126 DGRSIRVGAILDGPNDYITKALGTFDAPDVPVPATVTTKVKGDRYCATVATAAVIAKVTR 185 Query: 158 DRLMRIAHKK--YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 DRLM ++ Y Y + + GY +A H++ I GPS +HR+++ Sbjct: 186 DRLMIELGERPEYAIYEWQRNKGYGSAAHREAIAAHGPSDLHRISW 231 >gi|258653296|ref|YP_003202452.1| ribonuclease H [Nakamurella multipartita DSM 44233] gi|258556521|gb|ACV79463.1| Ribonuclease H [Nakamurella multipartita DSM 44233] Length = 244 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 92/234 (39%), Gaps = 49/234 (20%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGP-----------VVVAAIILDPNNIPFGI 57 RPH +E + + +A +DEVGRGALAGP V +P G+ Sbjct: 6 RPHLRVEKQLMRDGVTRLAAMDEVGRGALAGPVSVGVVVVTPEV---------RRVPPGL 56 Query: 58 NDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116 DSK ++ + R+ L + ++ AS ID I A A A+ L Sbjct: 57 ADSKLLTPEARQRLVAPVRRWVQEYAVGHASADEIDAIGIIAALRTAGRRALAELSGPVD 116 Query: 117 SALIDGRSIPEDLPCQ----------------------------AFAVIKGDSISLSIAA 148 + L+DG P IK D ++A Sbjct: 117 AILLDGNHNYLREPAAPAAAPDPLAAPLFEVAAEAVAPADPEPAVHVRIKADMTCAAVAG 176 Query: 149 ASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 AS++AK RD ++ YP YGF + GY T +H ++E GP +HR ++R Sbjct: 177 ASVLAKTERDAILTGLGPDYPAYGFAVNKGYGTPEHLAALREHGPCAVHRRSWR 230 >gi|206896037|ref|YP_002247054.1| ribonuclease HII [Coprothermobacter proteolyticus DSM 5265] gi|206738654|gb|ACI17732.1| ribonuclease HII [Coprothermobacter proteolyticus DSM 5265] Length = 202 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 64/192 (33%), Positives = 98/192 (51%), Gaps = 4/192 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P +ELE + K PV G+DEVGRGA+AGP++V A+ ++ DSK++S +R+ Sbjct: 5 PSWELEKGLFGK---PVVGVDEVGRGAVAGPLLVCAVRFH-SSPEVKWRDSKQMSPLQRK 60 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 ++ I S+ I A+ ID+ I A A+ + + + DG+ Sbjct: 61 SVFANIVESSCFGIGLAAPWDIDRFGISFCLKQAAEEALAEIPLDDAIVVFDGKRPLTTE 120 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++KGD + S+AAAS++AKV RD LM P Y F +H GY T H + I+ Sbjct: 121 VPDYQCMVKGDVLLPSVAAASVVAKVIRDELMVCLDSLLPGYEFSAHKGYGTKTHLEAIR 180 Query: 190 EKGPSCIHRLTF 201 G + HR +F Sbjct: 181 CFGITAQHRRSF 192 >gi|213857938|ref|ZP_03384909.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 131 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 58/132 (43%), Positives = 76/132 (57%), Gaps = 2/132 (1%) Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 +S K+R LY++I A+ S+ A ID+ NI AT+ A+ AV L + P LID Sbjct: 1 MSEKRRLSLYDEIKEKALSWSLGRAEAHEIDELNILHATMLAMQRAVAGLHIAPEYVLID 60 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 G PE LP + AV+KGDS I+AASI+AKVTRD M +P YGF H GYPT Sbjct: 61 GNRCPE-LPVPSMAVVKGDSRVAEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPT 119 Query: 182 AKHQQVIKEKGP 193 A H + + + G Sbjct: 120 AFHLEKLAQYGA 131 >gi|171741370|ref|ZP_02917177.1| hypothetical protein BIFDEN_00451 [Bifidobacterium dentium ATCC 27678] gi|283455277|ref|YP_003359841.1| ribonuclease [Bifidobacterium dentium Bd1] gi|171276984|gb|EDT44645.1| hypothetical protein BIFDEN_00451 [Bifidobacterium dentium ATCC 27678] gi|283101911|gb|ADB09017.1| Putative ribonuclease [Bifidobacterium dentium Bd1] Length = 234 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 112/226 (49%), Gaps = 35/226 (15%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--------DPNNIPFGINDSK 61 P +LE + + + G DEVGRG+LAGPV+V A + D ++P G+ DSK Sbjct: 7 PTLQLEREIAARGYDVIVGFDEVGRGSLAGPVMVGAAAIRTADLDGPDALDVPEGVADSK 66 Query: 62 KISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 ++ +RE ++E + S A ++ ++S+ ID+ I A A A++ ++ A Sbjct: 67 MLTEHRRETIFESLKSWSASWAVGASSNAEIDEWGISYALGVAALRALDEVERELGIAD- 125 Query: 121 DGRSI--------PEDL---------------PCQAFAVIKGDSISLSIAAASIIAKVTR 157 DGR I P D P +KGD ++A A++IAKVTR Sbjct: 126 DGRPIRVGAILDGPNDYITKALGTFDAPDVPVPATVTTKVKGDRYCATVATAAVIAKVTR 185 Query: 158 DRLMRIAHKK--YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 DRLM ++ Y Y + + GY +A H++ I GPS +HR+++ Sbjct: 186 DRLMIELGERPEYAIYEWQRNKGYGSAAHREAIAAHGPSDLHRISW 231 >gi|297242877|ref|ZP_06926815.1| ribonuclease HII [Gardnerella vaginalis AMD] gi|296889088|gb|EFH27822.1| ribonuclease HII [Gardnerella vaginalis AMD] Length = 255 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 74/248 (29%), Positives = 112/248 (45%), Gaps = 50/248 (20%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII----LDPNNIPFGIN 58 ++IP P F+ E + + V G+DEVGRG+LAGPV+V AA+I + N +P G+ Sbjct: 6 SNIPLVPSFKYEQDLLSEGYDWVIGLDEVGRGSLAGPVMVGAAVIGIKQVKENYMPEGLA 65 Query: 59 DSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVEN------- 110 DSK +S K+REELYE + ++ S ++ ID+ I A A A+ Sbjct: 66 DSKLLSEKRREELYEPLQKWCTTWAVGSCTNTEIDEWGISYALGVAALKAISKVEEDIKK 125 Query: 111 --------------------------------LQVIPRSALIDGRSIPEDL---PCQAFA 135 L + P + Sbjct: 126 LSFSVNADSGENTCAKLGADSGANSNFRIAAILDGPCDYIDKVANTFDAPYVPEPVKVHT 185 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHK--KYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++K D S+AAA+++AKVTRD LM K +Y Y + S+ GY + H+ IK+ GP Sbjct: 186 LVKADRQCASVAAAAVLAKVTRDNLMVSLAKNPQYAAYDWASNKGYGSLAHRNAIKKVGP 245 Query: 194 SCIHRLTF 201 S +HRL++ Sbjct: 246 SDLHRLSW 253 >gi|255020983|ref|ZP_05293038.1| Ribonuclease HII [Acidithiobacillus caldus ATCC 51756] gi|254969588|gb|EET27095.1| Ribonuclease HII [Acidithiobacillus caldus ATCC 51756] Length = 168 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 63/165 (38%), Positives = 89/165 (53%), Gaps = 5/165 (3%) Query: 41 VVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKA 99 + VAA+IL G+ DSKK+S +R L +KI + A +I+SA I+++N+ +A Sbjct: 1 MTVAAVIL--ARPLPGLADSKKLSPLRRAVLSQKIRAEAWAWAIASAGSWEIERYNVLQA 58 Query: 100 TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR 159 TL A+ A+ L P +DG QA +++GDS +IAAASI+AK RD Sbjct: 59 TLRAMDRALRALPPGPWRVAVDGNRALPHW--QAETLVRGDSRLDAIAAASILAKTARDA 116 Query: 160 LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 M + P Y F H GYPT H ++ GPS IHR F P+ Sbjct: 117 EMDALDRHLPGYAFGQHRGYPTPLHLAALQRLGPSLIHRRGFAPV 161 >gi|256371394|ref|YP_003109218.1| Ribonuclease H [Acidimicrobium ferrooxidans DSM 10331] gi|256007978|gb|ACU53545.1| Ribonuclease H [Acidimicrobium ferrooxidans DSM 10331] Length = 200 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 68/201 (33%), Positives = 100/201 (49%), Gaps = 15/201 (7%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAI---------ILDPNNIPFGINDSKKISHKK 67 M+ + + + GIDEVGRGA AGPVVV A IL + G+ DSK +S Sbjct: 1 MLHQPSGDRLVGIDEVGRGAWAGPVVVGAARGSVAAAAAIL--AHPRGGVRDSKALSPAA 58 Query: 68 REELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE + ++ + + SAS + IDK + A A + A+ + L+DG +P Sbjct: 59 REAALGALEAAGLELTVGSASAREIDKLGLTGALRLAAHRALGAASEL--EVLLDG-RVP 115 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + ++ GD IAAASI+AKV RD M + YGF H GY TA+H++ Sbjct: 116 YVEAGRVHCIVGGDRRHPLIAAASIVAKVRRDAFMVALDELAAGYGFARHKGYGTAEHRR 175 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 + E G + HR +F P+ + Sbjct: 176 ALSEHGVTPWHRRSFGPIGGM 196 >gi|306819232|ref|ZP_07452943.1| ribonuclease HII [Mobiluncus mulieris ATCC 35239] gi|304648014|gb|EFM45328.1| ribonuclease HII [Mobiluncus mulieris ATCC 35239] Length = 274 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 101/229 (44%), Gaps = 54/229 (23%) Query: 25 PVAGIDEVGRGALAGPV-----VVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 V G+DEVGRGALAGPV VV+A L P G+NDSK ++ ++RE L + I S Sbjct: 47 LVGGMDEVGRGALAGPVCIGVTVVSATELAAGFPP-GLNDSKALTARRREALVQPIQSWV 105 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGR------------ 123 +I A++ ID+ I A A + A+ L +P+ L+DG Sbjct: 106 KDFAIGEATNMEIDEMGIMAAMRLAGWRALNQLDARGHLPQKLLLDGNVDYLQAEHQANL 165 Query: 124 -----------------------------SIPEDLPC-QAFAVIKGDSISLSIAAASIIA 153 P P + ++K D + ++A A+++A Sbjct: 166 FDAQWHLMNPAQPAQPAQPAQPAMGTTPAHNPPPAPLLKVQTLVKADQHAATVAGAAVLA 225 Query: 154 KVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 KV RD M P YG+ +VGY T H++ I GPS HR T++ Sbjct: 226 KVYRDAFMSRLED--PGYGWSHNVGYGTKAHREAISRLGPSRWHRHTWK 272 >gi|254467826|ref|ZP_05081232.1| ribonuclease HII [beta proteobacterium KB13] gi|207086636|gb|EDZ63919.1| ribonuclease HII [beta proteobacterium KB13] Length = 179 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 75/189 (39%), Positives = 99/189 (52%), Gaps = 26/189 (13%) Query: 27 AGIDEVGRGALAGPVVVAAII-----------LDPNNIPFGINDSKKISHKKREELYEKI 75 GIDEVGRG +D + ++DSK +S K+RE L ++I Sbjct: 3 IGIDEVGRGC-----------VAGPVVAAAVVIDESFDVL-VSDSKLLSAKRRESLDKEI 50 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 + SIS + + +D+ NIHKA+L A+ A NL S DG+ P+ A Sbjct: 51 KKKCVDFSISVINSKIVDEINIHKASLLAMEQAYINLCHQSGSIKCDGKFTPKIDG--AV 108 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 A + GD + I+AASIIAKV RD LM KYPDY FD H GY T H + I++ GP Sbjct: 109 AHVNGDKLYTEISAASIIAKVYRDHLMNYISLKYPDYHFDKHKGYLTKLHLEAIEQYGPC 168 Query: 195 CIHRLTFRP 203 IHRLTF+P Sbjct: 169 NIHRLTFKP 177 >gi|311744109|ref|ZP_07717915.1| ribonuclease HII [Aeromicrobium marinum DSM 15272] gi|311313239|gb|EFQ83150.1| ribonuclease HII [Aeromicrobium marinum DSM 15272] Length = 191 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 72/176 (40%), Positives = 107/176 (60%), Gaps = 4/176 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISISS 85 AG+DE GRGA AGP+V AA+ILD G+ DSK ++ +RE +++I T + +S+ Sbjct: 2 AGVDEAGRGACAGPLVAAAVILD--RPVPGLADSKLLTPARREACHDEILTRAVDVSVVV 59 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S D+ +H+A ++A+ A+ L P L DG + + L A+ KGD ++ S Sbjct: 60 VSAADCDRLGLHRANIEALRRALARLTRRPGYVLTDGFPV-DGLGTPGLAMWKGDRVAAS 118 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAAS++AKVTRDRLM H+++P Y F +H GY TA H+ ++ GP HR T+ Sbjct: 119 IAAASVVAKVTRDRLMVELHEQFPAYDFGTHKGYATAAHEAALRRHGPCAEHRSTY 174 >gi|269219635|ref|ZP_06163489.1| ribonuclease HII [Actinomyces sp. oral taxon 848 str. F0332] gi|269210877|gb|EEZ77217.1| ribonuclease HII [Actinomyces sp. oral taxon 848 str. F0332] Length = 227 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 66/208 (31%), Positives = 98/208 (47%), Gaps = 16/208 (7%) Query: 10 PHFELEAMVREK--NMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISH 65 P E+E +AG+DEVGRG+LAGPV V ++D + P G+ DSK +S Sbjct: 10 PSREIEIDALRSLPPGALIAGVDEVGRGSLAGPVSVGIALIDASTGDFPEGLRDSKAMSP 69 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 RE + + A+ +++ A ID I A A A+ L P + L+DG+ Sbjct: 70 AARERMAPLVREWAVDVAVGHAGPDVIDDVGIVAALRHAAKEALNGLSATPSAVLLDGKH 129 Query: 125 ----------IPEDLP-CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 + LP +KGD+ IAAAS+ AKV RD LM + +P Y + Sbjct: 130 NWWAEDSLFDVDPLLPQIPVRMEVKGDARCAVIAAASVAAKVERDGLMVVLDGCFPGYDW 189 Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + GY + H + + GPS HR ++ Sbjct: 190 ARNKGYASPSHIEGLARLGPSDHHRKSW 217 >gi|134298779|ref|YP_001112275.1| ribonuclease H [Desulfotomaculum reducens MI-1] gi|134051479|gb|ABO49450.1| Ribonuclease H [Desulfotomaculum reducens MI-1] Length = 355 Score = 164 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 63/176 (35%), Positives = 89/176 (50%), Gaps = 5/176 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGI-NDSKKISHKKREELYEKITSSAI-ISIS 84 AGIDEVG ++AGP+V A ++L ++ GI DSK+++ K EE+ I A I+ Sbjct: 89 AGIDEVGVSSIAGPMVAAVVVLPHDHNIPGIPRDSKEMTLKSIEEISSLIFEKADFWHIA 148 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQ-VIPR-SALIDGRSIPEDLPCQAFAVIKGDSI 142 S S + ID A ++ V P+ ++DG+ + AV KGDSI Sbjct: 149 SISPKEIDDIGPELAREKLWMECANKVRSVFPKIRIIVDGKDKIPGFT-KQNAVSKGDSI 207 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 ++AA+I+AK D MRI H YP Y F + GYP +H IK G HR Sbjct: 208 FSGVSAAAIVAKQYCDNEMRILHNYYPQYNFSKNKGYPVYEHYVAIKNYGICPSHR 263 >gi|291456102|ref|ZP_06595492.1| ribonuclease HII [Bifidobacterium breve DSM 20213] gi|291382511|gb|EFE90029.1| ribonuclease HII [Bifidobacterium breve DSM 20213] Length = 286 Score = 164 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 69/283 (24%), Positives = 112/283 (39%), Gaps = 87/283 (30%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII----LDPN--------- 51 + P +LE + + + G DEVGRGALAGPV+V A I L P+ Sbjct: 1 MMITPTLDLERSLASQGYDLIVGFDEVGRGALAGPVMVGCAAIWARDLKPDADGELAQAA 60 Query: 52 ---------------------------NIPFGINDSKKISHKKREELYEKITSS-AIISI 83 ++P G+ DSK ++ +RE +++++ S A ++ Sbjct: 61 GSAASSRVSGDNGTDAGVITPNPAPYLSVPAGVADSKMLTEHRREAIFDELCSWCAAYAV 120 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVI---------PRSAL----IDGRSIPEDLP 130 +S+ ID+ I A A A+ ++ PR +GR +P P Sbjct: 121 GQSSNAEIDEWGITYALGVAALRALNQVERDLGVGSEFGSPREGSCLTATEGRPLPSRRP 180 Query: 131 CQAFAVIKGDSISLSIAAASIIA-----------------------------KVTRDRLM 161 A++ G S ++ A + A KVTRDRLM Sbjct: 181 ITIGAILDGPSDYITKALNTFDAPDVPIPADVTTKVKGDQHCATVATAAVIAKVTRDRLM 240 Query: 162 RIAHK---KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + +Y Y +D + GY +A H+ I E GP+ +HR ++ Sbjct: 241 VSIAQGNPRYAAYEWDHNKGYGSAAHRAAIAEYGPTPLHRTSW 283 >gi|307700238|ref|ZP_07637279.1| ribonuclease HII [Mobiluncus mulieris FB024-16] gi|307614620|gb|EFN93848.1| ribonuclease HII [Mobiluncus mulieris FB024-16] Length = 257 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 99/222 (44%), Gaps = 46/222 (20%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI 80 V G+DEVGRGALAGPV + ++ + P G+NDSK ++ ++RE L + I S Sbjct: 36 LVGGMDEVGRGALAGPVCIGVTVVSATELAAGFPPGLNDSKALTARRREALVQPIQSWVK 95 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGR------------- 123 +I A++ ID+ I A A + A+ L +P+ L+DG Sbjct: 96 DFAIGEATNMEIDEMGIMAAMRLAGWRALNQLDARGHLPQKLLLDGNVDYLQAEHQANLF 155 Query: 124 ----------------------SIPEDLPC-QAFAVIKGDSISLSIAAASIIAKVTRDRL 160 P P + ++K D + ++A A+++AKV RD Sbjct: 156 DAQWHLMNPAQPAQPAMGTTPAHNPPPAPLLKVQTLVKADQHAATVAGAAVLAKVYRDAF 215 Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 M P YG+ +VGY T H++ I G S HR T++ Sbjct: 216 MSRLED--PGYGWSHNVGYGTKAHREAISRLGSSRWHRHTWK 255 >gi|294790566|ref|ZP_06755724.1| ribonuclease HII [Scardovia inopinata F0304] gi|294458463|gb|EFG26816.1| ribonuclease HII [Scardovia inopinata F0304] Length = 279 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 80/272 (29%), Positives = 120/272 (44%), Gaps = 80/272 (29%) Query: 10 PHFELEAMVRE--KNMWPVAGIDEVGRGALAGPVVVAAIIL------DPNN--------- 52 PH+ +EA + N + G DEVGRG LAGPV+V A P+ Sbjct: 3 PHWRVEAALAAGPDNPQWIIGCDEVGRGCLAGPVMVGACAFRLPDLRPPDYASEHKFDYE 62 Query: 53 ----------IPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATL 101 IP G+ DSK ++ KKRE LY+ + S + ++ SAS++ ID+ I A Sbjct: 63 SDYESAMTASIPSGLKDSKLLTEKKREALYDPLASWSDTWAVGSASNKEIDQVGIISALG 122 Query: 102 DAIYHAVE--------------------------------NLQVIPRSALIDG------- 122 A A++ L +P S ++DG Sbjct: 123 LAAVRALDQIGQTISGSSSEAVDASEETEDTDDHSSREARGLSQLPASLILDGPYDYISP 182 Query: 123 ----RSIPEDLPCQ------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD-- 170 +P+ + + V+KGD S+AAAS++AKVTRDR M K P Sbjct: 183 ILQSILLPDQIRSRFAFRLSVTTVVKGDQTCASVAAASVMAKVTRDRYMIRLADKNPQWE 242 Query: 171 -YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 YG+ + GY TA+H++ IK+ GP+ HR+++ Sbjct: 243 PYGWARNKGYGTAQHRRAIKDLGPTSYHRVSW 274 >gi|294102509|ref|YP_003554367.1| Ribonuclease H [Aminobacterium colombiense DSM 12261] gi|293617489|gb|ADE57643.1| Ribonuclease H [Aminobacterium colombiense DSM 12261] Length = 195 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 77/186 (41%), Positives = 109/186 (58%), Gaps = 6/186 (3%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 +AG+DE GRG LAGPVV AA++L P+ + G+NDSKK++ KRE++++ + S Sbjct: 2 GNRVIAGVDEAGRGPLAGPVVAAAVVLTPSQLDALAALGLNDSKKLTPLKREKIFKAMVS 61 Query: 78 SAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-RSIPEDLPCQAFA 135 + +AS + ID+ NI +ATL A+ +V L + ++DG IP A Sbjct: 62 LGVAWRAQAASPRRIDQMNILQATLWAMSRSVNKLPHVFEEVIVDGSVLIPGLRSYPQKA 121 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 + KGDS+ +AAAS++AKV RDR M YP Y F H GYPT H++ I E G S Sbjct: 122 IPKGDSLVPEVAAASVVAKVLRDRAMVALDMAYPQYNFAKHKGYPTEDHRRRITEFGLSP 181 Query: 196 IHRLTF 201 IHR +F Sbjct: 182 IHRRSF 187 >gi|229140479|ref|ZP_04269034.1| Ribonuclease [Bacillus cereus BDRD-ST26] gi|228643040|gb|EEK99316.1| Ribonuclease [Bacillus cereus BDRD-ST26] Length = 147 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 65/146 (44%), Positives = 94/146 (64%), Gaps = 3/146 (2%) Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 +S KRE Y++I + AI I + S Q ID+ NI++AT A+ AV NL P+ LID Sbjct: 1 MSEAKRERFYDEIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLID 60 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 +P P ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T Sbjct: 61 AMKLPT--PIPQTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGT 118 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207 +H + I+ G HR +F P++++ Sbjct: 119 KQHLEAIEAHGILEEHRKSFAPIKDM 144 >gi|254173516|ref|ZP_04880188.1| ribonuclease HII [Thermococcus sp. AM4] gi|214032208|gb|EEB73038.1| ribonuclease HII [Thermococcus sp. AM4] Length = 230 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 105/206 (50%), Gaps = 28/206 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS-AI 80 +AGIDE GRG + GP+V+AA+++D + + G+ DSKK++ ++RE L+++I + Sbjct: 7 LAGIDEAGRGPVIGPMVIAAVVVDEDKLGNLEELGVKDSKKLTPRRRERLFDEIIAQLDD 66 Query: 81 ISISSASHQYID--KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED---------- 128 I + ID K +++ ++ A+ +L+V P ID + E Sbjct: 67 YVIIELWPEEIDSRKVTLNEFEVENFAKALNSLKVRPDVVYIDAADVKEGRFGEAVGRLL 126 Query: 129 -LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQ 186 + A + D + ++AASI+AKV RDR + ++Y + G GYP+ + ++ Sbjct: 127 SFKAEIVAEHRADDKFVPVSAASILAKVVRDRAIERLKREYGEIG----SGYPSDPRTRE 182 Query: 187 VI----KEKG-PSCIHRLTFRPLRNL 207 + +E G I R T++ ++ + Sbjct: 183 FLEKYYREHGDFPPIVRKTWKTVKKI 208 >gi|320532025|ref|ZP_08032917.1| ribonuclease HII [Actinomyces sp. oral taxon 171 str. F0337] gi|320135759|gb|EFW27815.1| ribonuclease HII [Actinomyces sp. oral taxon 171 str. F0337] Length = 240 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 100/226 (44%), Gaps = 36/226 (15%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISH 65 RP LE + E V G+DEVGRGALAGPV V I+ + P G+ DSK+++ Sbjct: 8 RPDRCLEKALLET-YDCVGGLDEVGRGALAGPVSVGLAIVARRTDDGFPEGLADSKQLTA 66 Query: 66 KKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHA---VENLQVIPRSALID 121 + R L + + S +++ AS ID+ I A A A V + P ++D Sbjct: 67 RARRGLVDPVRSWLVDHAVAHASPAEIDERGIVGALRMAGLRALQQVADRGHAPGIIILD 126 Query: 122 GRSI----------------------PEDLPCQAFA----VIKGDSISLSIAAASIIAKV 155 G + PE + + +K D+ +AAASI+AKV Sbjct: 127 GVADWLTAPQPDLLTALEGAPPFRFAPEPVAVPSTPPVLMEVKADARCAVVAAASILAKV 186 Query: 156 TRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 RD LM P YG+ S+ GY + H + + G S HR ++ Sbjct: 187 ERDALMVDLDD--PGYGWASNKGYASPAHIKGLSALGASDQHRRSW 230 >gi|315230435|ref|YP_004070871.1| ribonuclease HII [Thermococcus barophilus MP] gi|315183463|gb|ADT83648.1| ribonuclease HII [Thermococcus barophilus MP] Length = 227 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 106/205 (51%), Gaps = 28/205 (13%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS-AIIS 82 GIDE GRG + GP+V+AA+++D N+ G+ DSKK++ ++RE+L+ +I + Sbjct: 8 GIDEAGRGPVIGPLVIAAVVIDEKNLSKLEALGVRDSKKLTPRRREKLFNEIIELLDDYA 67 Query: 83 ISSASHQYIDKHN--IHKATLDAIYHAVENLQVIPRSALIDGRSIPE-----------DL 129 I S + ID+ +++ ++ + +L+V P ID I E + Sbjct: 68 IIELSPEQIDEREGTMNEFEIENFVRVLNSLKVKPDVLYIDAADIKEKRFGEIIGKGLNF 127 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVI 188 + A K D+ L ++AASI+AKVTRD+ + K+Y + G GYP+ + ++ + Sbjct: 128 SPKIIAEHKADAKYLPVSAASILAKVTRDKAIEKLKKQYGEIG----SGYPSDPRTRKFL 183 Query: 189 ----KEKG-PSCIHRLTFRPLRNLS 208 KE G I R +++ LR + Sbjct: 184 EEYYKEHGEFPPIVRKSWKTLRKIE 208 >gi|212223919|ref|YP_002307155.1| ribonuclease HII [Thermococcus onnurineus NA1] gi|226736826|sp|B6YVT5|RNH2_THEON RecName: Full=Ribonuclease HII; Short=RNase HII gi|212008876|gb|ACJ16258.1| ribonuclease HII [Thermococcus onnurineus NA1] Length = 227 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 28/207 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS-SAI 80 +AGIDE GRG + GP+V+AA+++D N+P G+ DSKK++ K+RE L+++I Sbjct: 3 LAGIDEAGRGPVLGPMVIAAVVVDEGNVPKLEELGVKDSKKLTPKRRERLFDEIVQLLDD 62 Query: 81 ISISSASHQYIDKHN--IHKATLDAIYHAVENLQVIPRSALIDGRSIPE----------- 127 I + ID +++ ++ A+ +L+V P ID + E Sbjct: 63 YVILELWPEEIDSREGTLNEFEVENFVKALNSLKVKPDVVYIDAADVKEARFGEEIKAKL 122 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ-- 185 D A K D + ++AASI+AKV RDR + +Y + G GYP+ Sbjct: 123 DFEADIIAEHKADDKFVPVSAASILAKVARDRAIEKLKDQYGEIG----SGYPSDPRTRT 178 Query: 186 ---QVIKEKG-PSCIHRLTFRPLRNLS 208 + ++ G I R T++ L+ + Sbjct: 179 FLEEYYRKHGEFPPIVRRTWKTLKKIE 205 >gi|88855258|ref|ZP_01129923.1| ribonuclease HII [marine actinobacterium PHSC20C1] gi|88815786|gb|EAR25643.1| ribonuclease HII [marine actinobacterium PHSC20C1] Length = 211 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 68/204 (33%), Positives = 100/204 (49%), Gaps = 12/204 (5%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKK 67 P ++E + V G DEVGRGA+AGPV V + P P G+ DSK +S K+ Sbjct: 6 PSNDIELELFSAGARTVIGCDEVGRGAIAGPVGVGMTAMTPAHGAWPIGLRDSKMLSQKR 65 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENL-----QVIPRSALID 121 RE L A + ++ A +D I A A A+ L V+ L+D Sbjct: 66 RELLEPLTLEWAPLSAVGYADATEVDSIGITAALGLAGKRALIQLHEAGVDVMASVVLLD 125 Query: 122 GRSI----PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 G + + + +K D +S+AAAS++AKV RDRLM A +YP Y + S+ Sbjct: 126 GSTDWLSGALSVAPRVHTRVKADRDCVSVAAASVVAKVQRDRLMIEADGEYPGYHWPSNK 185 Query: 178 GYPTAKHQQVIKEKGPSCIHRLTF 201 GY +A H I++ G + +HR T+ Sbjct: 186 GYGSAAHFDAIRQLGATELHRHTW 209 >gi|212716712|ref|ZP_03324840.1| hypothetical protein BIFCAT_01647 [Bifidobacterium catenulatum DSM 16992] gi|212660416|gb|EEB20991.1| hypothetical protein BIFCAT_01647 [Bifidobacterium catenulatum DSM 16992] Length = 259 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 70/253 (27%), Positives = 113/253 (44%), Gaps = 58/253 (22%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-------------------DP 50 P +LE + E+ + G DEVGRG+LAGPV+V A + P Sbjct: 7 PTLDLERAIAEQGYDVIVGFDEVGRGSLAGPVMVGAAAIWARDLDGAAGASQGGSQESSP 66 Query: 51 NNIPFGINDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKAT--------- 100 +P G+ DSK ++ KRE +++++ A ++ +AS+ ID+ I A Sbjct: 67 LEVPKGVADSKMLTEHKREAIFDELEQWCAAWAVGAASNTEIDEWGISYALGVAALRALA 126 Query: 101 ---------------LDAIYHAVENLQVIPRSALIDG-----------RSIPE-DLPCQA 133 + + E L + A++DG P+ +P Sbjct: 127 EAERKLGIGGGESAGIAGSSESSEALNNLKIGAILDGPNDYITKALNTFDAPDVPIPADV 186 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK--KYPDYGFDSHVGYPTAKHQQVIKEK 191 +KGD ++A A++IAKVTRDRLM +Y Y + ++ GY +A H+ I E Sbjct: 187 TCKVKGDRHCATVATAAVIAKVTRDRLMVKLAAQPQYAPYEWANNKGYGSAAHRDAIAEF 246 Query: 192 GPSCIHRLTFRPL 204 GPS +HRL++ + Sbjct: 247 GPSDLHRLSWHLV 259 >gi|312133301|ref|YP_004000640.1| rnhb [Bifidobacterium longum subsp. longum BBMN68] gi|311772513|gb|ADQ02001.1| RnhB [Bifidobacterium longum subsp. longum BBMN68] Length = 275 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 72/271 (26%), Positives = 118/271 (43%), Gaps = 81/271 (29%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII-------LDPNN--------- 52 P +LE ++ + +AG DEVGRGALAGPV+V A I LD ++ Sbjct: 4 PTLDLERILAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63 Query: 53 --IPFGINDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAV- 108 +P G+ DSK ++ +RE +++++ A ++ AS+ ID+ I A A A+ Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123 Query: 109 ----------------------------------------ENLQVIPRSALI-------- 120 E+++ +P+ A I Sbjct: 124 QVERELGLRLGGGLTAKKAAGEIVEGRPGDSVGESIGNCGESVRALPKVAGILDGPSDYI 183 Query: 121 -------DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK---KYPD 170 D +P +P +KGD ++A A++IAKVTRDRLM + +Y Sbjct: 184 TKALNTFDAPDVP--IPADITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRYAA 241 Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 Y + + GY +A H+ I E GP+ +HR+++ Sbjct: 242 YEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 272 >gi|145636492|ref|ZP_01792160.1| ribonuclease HII [Haemophilus influenzae PittHH] gi|145270317|gb|EDK10252.1| ribonuclease HII [Haemophilus influenzae PittHH] Length = 111 Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 48/106 (45%), Positives = 67/106 (63%) Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160 + A+ AV++L++ P L+DG IP+DL A AV+KGDSI I+AASI+AKV RD+ Sbjct: 1 MLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKGDSIVAEISAASILAKVARDQE 60 Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 M K+YP+Y F H GYPT H + + E G HR +F P++ Sbjct: 61 MEELDKQYPEYAFAKHKGYPTKLHLEKLAEFGTLPQHRRSFAPVKK 106 >gi|207108743|ref|ZP_03242905.1| ribonuclease HII [Helicobacter pylori HPKX_438_CA4C1] Length = 189 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 87/179 (48%), Gaps = 11/179 (6%) Query: 37 LAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS--AIISISSASHQY 90 +AG + VA + D + G+ DSKK+S KKR L +KI + + S + Sbjct: 1 MAGSLFVAGVACDEKTALEFLKMGLKDSKKLSQKKRFFLEDKIKTHGEVKFFVVKKSAEA 60 Query: 91 IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIKGDSISLSIA 147 ID + AI +EN + IDG + + + P +IKGD IA Sbjct: 61 IDSLGLGACLRLAIEEILENGCSLANEIKIDGNTAFGLNKRYPHIQ-TIIKGDETIAQIA 119 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 AS++AK +DR MR H + +YG+D + GY T +H + I + G + HR +F L+N Sbjct: 120 MASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHRHSF-TLKN 177 >gi|145640735|ref|ZP_01796318.1| ribonuclease HII [Haemophilus influenzae R3021] gi|145274661|gb|EDK14524.1| ribonuclease HII [Haemophilus influenzae 22.4-21] Length = 111 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 46/106 (43%), Positives = 66/106 (62%) Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160 + A+ AV++L++ P L+DG IP+DL AV+KGDS+ I+AASI+AKV RD+ Sbjct: 1 MLAMTRAVKSLKIQPHFVLVDGNKIPKDLAIPVQAVVKGDSLVAEISAASILAKVARDQE 60 Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 M K+YP+Y F H GYPT H + + E G HR +F P++ Sbjct: 61 MEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRRSFAPVKK 106 >gi|266625575|ref|ZP_06118510.1| ribonuclease HII [Clostridium hathewayi DSM 13479] gi|288862520|gb|EFC94818.1| ribonuclease HII [Clostridium hathewayi DSM 13479] Length = 130 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 55/127 (43%), Positives = 74/127 (58%), Gaps = 3/127 (2%) Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 ++ + ID+ NI +AT +A+ AV L P+ L D +IP L +IKGD Sbjct: 5 FAVGVVGPERIDEINILQATYEAMRLAVSQLTNPPQVLLNDAVTIP-GLDILQVPIIKGD 63 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + S+SIAA SI+AKVTRD +M K +P+YGF H GY TA H +KE GP IHR + Sbjct: 64 AKSVSIAAGSIMAKVTRDHMMVEYDKLFPEYGFAKHKGYGTAAHIAALKEFGPCAIHRRS 123 Query: 201 FRPLRNL 207 F +RN Sbjct: 124 F--IRNF 128 >gi|240103148|ref|YP_002959457.1| ribonuclease HII [Thermococcus gammatolerans EJ3] gi|239910702|gb|ACS33593.1| Ribonuclease HII (rnhB) [Thermococcus gammatolerans EJ3] Length = 226 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 100/206 (48%), Gaps = 28/206 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS-AI 80 +AGIDE GRG + GP+V+AA+++D + G+ DSKK++ +RE L+++I + Sbjct: 5 IAGIDEAGRGPVIGPMVIAAVVVDEEKLKSLEELGVRDSKKLTPGRRERLFDEIIAQLDD 64 Query: 81 ISISSASHQYIDKHNI--HKATLDAIYHAVENLQVIPRSALIDGRSIPED---------- 128 I + ID + ++ ++ A+ +L+V P ID + E Sbjct: 65 YVIIELWPEEIDSREVTLNEFEVENFSKALNSLKVKPDVVYIDAADVKEGRFGEAIGKLL 124 Query: 129 -LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQ 186 + A + D + ++AASI+AKV RDR + ++Y + G GYP+ + + Sbjct: 125 KFKAEIVAEHRADDKFVPVSAASILAKVVRDRAIEKLKEEYGEIG----SGYPSDPRTRD 180 Query: 187 VI----KEKG-PSCIHRLTFRPLRNL 207 + +E G I R T++ + + Sbjct: 181 FLERYYREHGDFPPIVRRTWKTVEKI 206 >gi|242398404|ref|YP_002993828.1| Ribonuclease HII [Thermococcus sibiricus MM 739] gi|259494074|sp|C6A1I4|RNH2_THESM RecName: Full=Ribonuclease HII; Short=RNase HII gi|242264797|gb|ACS89479.1| Ribonuclease HII [Thermococcus sibiricus MM 739] Length = 224 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 99/205 (48%), Gaps = 28/205 (13%) Query: 28 GIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITS-SAIIS 82 GIDE GRG + GP+V+AA+++D + G+ DSKK+S KKREEL+EKI Sbjct: 5 GIDEAGRGPVVGPLVIAAVVIDESKIEKFEALGVKDSKKLSPKKREELFEKIIELVDDYF 64 Query: 83 ISSASHQYIDKHNIHKATLDAIYHA--VENLQVIPRSALIDGRSIPED-----------L 129 I S + IDK + A + +L++ P ID + E+ Sbjct: 65 ILELSPEDIDKREGTMNDFEVENFAKVLNSLKIKPDLVYIDAADVNEERFGIVVREKLSF 124 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-----AKH 184 + A K DS + +AAASI+AKVTRD+ + + Y + G GYP+ Sbjct: 125 YPKIIAEHKADSKYIPVAAASILAKVTRDKAIERLKEIYGNIG----SGYPSDPITRKFL 180 Query: 185 QQVIKEKG-PSCIHRLTFRPLRNLS 208 ++ KE G + R +++ L+ + Sbjct: 181 EEYYKEHGSFPPVVRRSWKTLKKIE 205 >gi|322379000|ref|ZP_08053403.1| ribonuclease HII [Helicobacter suis HS1] gi|322380765|ref|ZP_08054871.1| ribonuclease HII [Helicobacter suis HS5] gi|321146769|gb|EFX41563.1| ribonuclease HII [Helicobacter suis HS5] gi|321148492|gb|EFX42989.1| ribonuclease HII [Helicobacter suis HS1] Length = 194 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 57/186 (30%), Positives = 84/186 (45%), Gaps = 10/186 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITSS--A 79 + GIDE GRG L G + VA + G+ +SK++ +KR E ++I Sbjct: 2 ILGIDEAGRGCLCGSLFVAGVGCTAEIAAFFNKQGLKESKQLKREKRFEFAKQIQEHREV 61 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF---AV 136 + + + S ID + +AI V I +DG ++ A+ Sbjct: 62 LSLVVAKSALEIDTKGLSVCVQEAITQIVLRFPHIL-HVKLDGNTLFHLHFSHLRYFEAI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA ASI+AK +D+ M K YP YGF H GY T +H++ I G Sbjct: 121 IKGDCQITQIAMASILAKAAKDKEMLALDKAYPAYGFVRHCGYGTQEHRKAITHLGYLKE 180 Query: 197 HRLTFR 202 HR +F+ Sbjct: 181 HRKSFK 186 >gi|296453566|ref|YP_003660709.1| ribonuclease H [Bifidobacterium longum subsp. longum JDM301] gi|296182997|gb|ADG99878.1| Ribonuclease H [Bifidobacterium longum subsp. longum JDM301] Length = 275 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 71/271 (26%), Positives = 116/271 (42%), Gaps = 81/271 (29%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII-------LDPNN--------- 52 P +LE + + + G DEVGRGALAGPV+V A I LD ++ Sbjct: 4 PTLDLERSLAAQGYDLITGFDEVGRGALAGPVMVGCAAIWACDLAPLDGDDSAELSGRTY 63 Query: 53 --IPFGINDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAV- 108 +P G+ DSK ++ +RE +++++ A ++ AS+ ID+ I A A A+ Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123 Query: 109 ----------------------------------------ENLQVIPRSALI-------- 120 E+++ +P+ A I Sbjct: 124 QVERELGLRLGGGLTAKKAAGEIVEGHPGDSVGESIGNCGESVRALPKVAGILDGPSDYI 183 Query: 121 -------DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK---KYPD 170 D +P +P +KGD ++A A++IAKVTRDRLM + +Y Sbjct: 184 TKALNTFDAPDVP--IPADITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRYAV 241 Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 Y + + GY +A H+ I E GP+ +HR+++ Sbjct: 242 YEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 272 >gi|32265505|ref|NP_859537.1| ribonuclease HII [Helicobacter hepaticus ATCC 51449] gi|32261553|gb|AAP76603.1| ribonuclease HII [Helicobacter hepaticus ATCC 51449] Length = 207 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 91/204 (44%), Gaps = 25/204 (12%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSSAI-- 80 VAGIDE GRG + G + +A II + I FG DSKK+ K+R +Y + S Sbjct: 1 MWVAGIDEAGRGCICGGLFIAGIIANEQVIAQFGAKDSKKMLPKQRVRVYNALLDSQKRG 60 Query: 81 ---ISISSASHQYIDKHNIHKATLDAIYHAVENL-----------QVIPRSALIDGR--- 123 ++ IDK+ + A I + L Q P +IDG Sbjct: 61 EIGFYVAQIQAWDIDKYGLSWAMRSGIEEVLSYLGSYMLEQNILVQNQPLDIVIDGNTTF 120 Query: 124 --SIPEDLPCQ---AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 IP L + +IKGD + I+ AS++AKV++D M + YP Y + G Sbjct: 121 GAHIPTFLAHKDVHLKTLIKGDELMPIISCASVVAKVSKDSQMYMLDNLYPQYLLAKNKG 180 Query: 179 YPTAKHQQVIKEKGPSCIHRLTFR 202 Y T +H++ I G HR +F+ Sbjct: 181 YATLEHKKQIMRYGYCPHHRKSFK 204 >gi|239622462|ref|ZP_04665493.1| ribonuclease HII [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514459|gb|EEQ54326.1| ribonuclease HII [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 279 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 66/273 (24%), Positives = 108/273 (39%), Gaps = 81/273 (29%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII-------LDPNN--------- 52 P +LE + + +AG DEVGRGALAGPV+V A I LD ++ Sbjct: 4 PTLDLERSLAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63 Query: 53 --IPFGINDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVE 109 +P G+ DSK ++ +RE +++++ A ++ AS+ ID+ I A A A+ Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNAEIDEWGITYALGVAALRALS 123 Query: 110 NLQVIPRSALIDGRSIP-----------EDLPC------------------QAFAVIKGD 140 ++ L +I E P + ++ G Sbjct: 124 QVERELGLRLGGESTIKKASGESAGEIVEGRPGGSVGEFIGNCGGSVRALPKVAGILDGP 183 Query: 141 SISLSIAAASIIA-----------------------------KVTRDRLMRIAHK---KY 168 S ++ A + A KVTRDRLM + +Y Sbjct: 184 SDYITKALNTFDAPDVPIPADITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRY 243 Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 Y + + GY +A H+ I E GP+ +HR+++ Sbjct: 244 AAYEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 276 >gi|290769753|gb|ADD61528.1| putative protein [uncultured organism] Length = 279 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 66/273 (24%), Positives = 108/273 (39%), Gaps = 81/273 (29%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII-------LDPNN--------- 52 P +LE + + +AG DEVGRGALAGPV+V A I LD ++ Sbjct: 4 PTLDLERSLAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63 Query: 53 --IPFGINDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVE 109 +P G+ DSK ++ +RE +++++ A ++ AS+ ID+ I A A A+ Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123 Query: 110 NLQVIPRSALIDGRSIP-----------EDLPCQAF------------------AVIKGD 140 ++ L +I E P + ++ G Sbjct: 124 QVERELGLRLGGESTIKKASGESAGKIVEGRPGDSVGESIGNCGESVRALPKVAGILDGP 183 Query: 141 SISLSIAAASIIA-----------------------------KVTRDRLMRIAHK---KY 168 S ++ A + A KVTRDRLM + +Y Sbjct: 184 SDYITKALNTFDAPDVPIPADITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRY 243 Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 Y + + GY +A H+ I E GP+ +HR+++ Sbjct: 244 AAYEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 276 >gi|332157881|ref|YP_004423160.1| ribonuclease HII [Pyrococcus sp. NA2] gi|331033344|gb|AEC51156.1| ribonuclease HII [Pyrococcus sp. NA2] Length = 219 Score = 157 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 54/209 (25%), Positives = 101/209 (48%), Gaps = 28/209 (13%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS- 78 + G+DE GRG + GP+V+ A+++ + + G+ DSK+++ ++RE ++++I + Sbjct: 1 MRIGGVDEAGRGPVIGPLVIVAVVISEDMLSDLRSIGVRDSKQLTPEQRERIFDEIVNVL 60 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVE--NLQVIPRSALIDGRSIPE--------- 127 S+ S Q ID + L+ A+ +L V P +D + E Sbjct: 61 DDYSVVVVSPQEIDNRSSSLNLLEVEKFALALNSLNVKPSRIYVDSADVDEKRFASLIRA 120 Query: 128 --DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKH 184 + + A K D+ +AAASI+AKV RDR + ++Y D+G GYP+ + Sbjct: 121 KLNYNAEVIAEHKADAKYEVVAAASILAKVIRDREIEKLKERYGDFG----SGYPSDPRT 176 Query: 185 QQVI----KEKG-PSCIHRLTFRPLRNLS 208 ++ + KE G I R ++ ++ + Sbjct: 177 RRWLEEYYKEYGEFPPIVRRSWDTVKRIE 205 >gi|322688522|ref|YP_004208256.1| ribonuclease HII [Bifidobacterium longum subsp. infantis 157F] gi|320459858|dbj|BAJ70478.1| ribonuclease HII [Bifidobacterium longum subsp. infantis 157F] Length = 279 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 66/273 (24%), Positives = 109/273 (39%), Gaps = 81/273 (29%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII-------LDPNN--------- 52 P +LE ++ + +AG DEVGRGALAGPV+V A I LD ++ Sbjct: 4 PTLDLERILAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63 Query: 53 --IPFGINDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVE 109 +P G+ DSK ++ +RE +++++ A ++ AS+ ID+ I A A A+ Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNAEIDEWGITYALGVAALRALS 123 Query: 110 NLQVIPRSALIDGRSIP-----------EDLPC------------------QAFAVIKGD 140 ++ L +I E P + ++ G Sbjct: 124 QVERELGLRLGGESTIKKASGESAGEIVEGRPGGSVGEFIGNCGGSVRALPKVAGILDGP 183 Query: 141 SISLSIAAASIIA-----------------------------KVTRDRLMRIAHK---KY 168 S ++ A + A KVTRDRLM + +Y Sbjct: 184 SDYITKALNTFDAPDVPIPADITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRY 243 Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 Y + + GY +A H+ I E GP+ +HR+++ Sbjct: 244 AAYEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 276 >gi|23464878|ref|NP_695481.1| ribonuclease HII [Bifidobacterium longum NCC2705] gi|23325467|gb|AAN24117.1| probable ribonuclease HII [Bifidobacterium longum NCC2705] gi|291517371|emb|CBK70987.1| RNase HII [Bifidobacterium longum subsp. longum F8] Length = 279 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 66/273 (24%), Positives = 109/273 (39%), Gaps = 81/273 (29%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII-------LDPNN--------- 52 P +LE ++ + +AG DEVGRGALAGPV+V A I LD ++ Sbjct: 4 PTLDLERILAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63 Query: 53 --IPFGINDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVE 109 +P G+ DSK ++ +RE +++++ A ++ AS+ ID+ I A A A+ Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNAEIDEWGITYALGVAALRALS 123 Query: 110 NLQVIPRSALIDGRSIP-----------EDLPC------------------QAFAVIKGD 140 ++ L +I E P + ++ G Sbjct: 124 QVERELGLRLGGESTIKKASGESAGEIVEGRPGGSVGESIGNCGGSVRALPKVAGILDGP 183 Query: 141 SISLSIAAASIIA-----------------------------KVTRDRLMRIAHK---KY 168 S ++ A + A KVTRDRLM + +Y Sbjct: 184 SDYITKALNTFDAPDVPIPADITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRY 243 Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 Y + + GY +A H+ I E GP+ +HR+++ Sbjct: 244 AAYEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 276 >gi|134104117|pdb|2DFF|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-204)-C Length = 213 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 28/207 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS-AI 80 +AGIDE GRG + GP+V+AA+++D N++P + DSKK++ K+RE+L+ +I Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62 Query: 81 ISISSASHQYI--DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE----------- 127 I I + +++ ++ A+ +L+V P D + E Sbjct: 63 YVILELPPDVIGSREGTLNEFEVENFAKALNSLKVKPDVIYADAADVDEERFARELGERL 122 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + + A K D I ++AASI+AKVTRDR + ++Y + G GYP+ + Sbjct: 123 NFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGYPSDPRTRA 178 Query: 188 I-----KEKG-PSCIHRLTFRPLRNLS 208 +E G I R ++ L+ ++ Sbjct: 179 FLENYYREHGEFPPIVRKGWKTLKKIT 205 >gi|332670021|ref|YP_004453029.1| ribonuclease H [Cellulomonas fimi ATCC 484] gi|332339059|gb|AEE45642.1| Ribonuclease H [Cellulomonas fimi ATCC 484] Length = 272 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 58/223 (26%), Positives = 93/223 (41%), Gaps = 38/223 (17%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP----------NNIPFGIND 59 PH E ++ VAG+DEVGRG+LAGP + P G+ D Sbjct: 20 PHLRHERVLLRDGARLVAGMDEVGRGSLAGP--------VSVGVVVVDVATRSAPRGVAD 71 Query: 60 SKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQV---IP 115 SK ++ R L + + ++ AS + ID I A A A+E + Sbjct: 72 SKLLTPAARTALLPALGRWGVARAVGHASAEEIDAVGIIAALRLAGTRALETVHAAVGPV 131 Query: 116 RSALIDG----------------RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR 159 L+DG P + +K D ++AAAS++AK RD Sbjct: 132 DVVLLDGSHDWLSGPTQQDLFAAVDASAPTPPRVLTRVKADRTCATVAAASVLAKCERDA 191 Query: 160 LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +M ++P+Y +D + GY + H +++ GP +HR ++R Sbjct: 192 VMVDLAARHPEYRWDENKGYSSPDHLAALRDHGPCVLHRRSWR 234 >gi|315657113|ref|ZP_07909997.1| ribonuclease HII [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492216|gb|EFU81823.1| ribonuclease HII [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 235 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 72/214 (33%), Positives = 105/214 (49%), Gaps = 32/214 (14%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILD------PNNI---PFGINDSKKISHKKRE 69 E + + G+DEVGRGALAGPV V +LD P+ P G+NDSK+++ ++R Sbjct: 22 HEGRLPLIGGMDEVGRGALAGPVCVGVAVLDQRSLENPDFPQGFPVGLNDSKQLTARRRV 81 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSI 125 L + I + +I AS+ ID+ I A A + A+ L +P+ L+DG Sbjct: 82 ALQDPIQAWVRDFAIGQASNTEIDELGIMSALRLAGWRALNELDARGHLPQRLLLDGNFD 141 Query: 126 PEDLPCQ-----------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 P Q ++KGD + IAAA+++AKV RD MR H Sbjct: 142 YLASPRQPDLFAGAGNLVSSPEVSVETLVKGDGKAAVIAAAAVLAKVYRDAFMRSLHD-- 199 Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 P YG+ +VGY T H+ + E G S HR T++ Sbjct: 200 PGYGWARNVGYGTPAHKAGLAELGASVWHRKTWK 233 >gi|134104118|pdb|2DFH|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-212)-C Length = 221 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 28/207 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS-AI 80 +AGIDE GRG + GP+V+AA+++D N++P + DSKK++ K+RE+L+ +I Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62 Query: 81 ISISSASHQYI--DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE----------- 127 I I + +++ ++ A+ +L+V P D + E Sbjct: 63 YVILELPPDVIGSREGTLNEFEVENFAKALNSLKVKPDVIYADAADVDEERFARELGERL 122 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + + A K D I ++AASI+AKVTRDR + ++Y + G GYP+ + Sbjct: 123 NFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGYPSDPRTRA 178 Query: 188 I-----KEKG-PSCIHRLTFRPLRNLS 208 +E G I R ++ L+ ++ Sbjct: 179 FLENYYREHGEFPPIVRKGWKTLKKIA 205 >gi|322690530|ref|YP_004220100.1| ribonuclease HII [Bifidobacterium longum subsp. longum JCM 1217] gi|320455386|dbj|BAJ66008.1| ribonuclease HII [Bifidobacterium longum subsp. longum JCM 1217] Length = 279 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 66/273 (24%), Positives = 107/273 (39%), Gaps = 81/273 (29%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII-------LDPNN--------- 52 P +LE + + +AG DEVGRGALAGPV+V A I LD ++ Sbjct: 4 PTLDLERSLAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63 Query: 53 --IPFGINDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVE 109 +P G+ DSK ++ +RE +++++ A ++ AS+ ID+ I A A A+ Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123 Query: 110 NLQVIPRSAL-----------IDGRSIPEDLPC------------------QAFAVIKGD 140 ++ L I E P + ++ G Sbjct: 124 QVERELGLRLRGESTIKKASGESAGKIVEGRPGGSVGESIGNCEGSVRALPKVAGILDGP 183 Query: 141 SISLSIAAASIIA-----------------------------KVTRDRLMRIAHK---KY 168 S ++ A + A KVTRDRLM + +Y Sbjct: 184 SDYITKALNTFDAPDVPIPADITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRY 243 Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 Y + + GY +A H+ I E GP+ +HR+++ Sbjct: 244 AAYEWAHNKGYGSAAHRTAIAEHGPTPLHRVSW 276 >gi|317482036|ref|ZP_07941061.1| ribonuclease HII [Bifidobacterium sp. 12_1_47BFAA] gi|316916603|gb|EFV38000.1| ribonuclease HII [Bifidobacterium sp. 12_1_47BFAA] Length = 279 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 66/273 (24%), Positives = 109/273 (39%), Gaps = 81/273 (29%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII-------LDPNN--------- 52 P +LE + + +AG DEVGRGALAGPV+V A I LD ++ Sbjct: 4 PTLDLERSLAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63 Query: 53 --IPFGINDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVE 109 +P G+ DSK ++ +RE +++++ A ++ AS+ ID+ I A A A+ Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123 Query: 110 NLQVI-----------PRSALIDGRSIPEDLPC------------------QAFAVIKGD 140 ++ ++A I E P + ++ G Sbjct: 124 QVERELGLRLGGGLTAKKAAGESAGKIVEGRPGGSVGESIGNCEGSVRALPKVAGILDGP 183 Query: 141 SISLSIAAASIIA-----------------------------KVTRDRLMRIAHK---KY 168 S ++ A + A KVTRDRLM + +Y Sbjct: 184 SDYITKALNTFDAPDVPIPADITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRY 243 Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 Y + + GY +A H+ I E GP+ +HR+++ Sbjct: 244 AAYEWAHNKGYGSAAHRTAIAEHGPTPLHRVSW 276 >gi|304389808|ref|ZP_07371767.1| ribonuclease HII [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326984|gb|EFL94223.1| ribonuclease HII [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 235 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 72/214 (33%), Positives = 105/214 (49%), Gaps = 32/214 (14%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILD------PNNI---PFGINDSKKISHKKRE 69 E + + G+DEVGRGALAGPV V +LD P+ P G+NDSK+++ ++R Sbjct: 22 HEGRLPLIGGMDEVGRGALAGPVCVGVAVLDQRSLDNPDFPQGFPVGLNDSKQLTARRRV 81 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSI 125 L + I + +I AS+ ID+ I A A + A+ L +P+ L+DG Sbjct: 82 ALQDPIQAWVRDFAIGQASNTEIDELGIMPALRLAGWRALNELDARGHLPQRLLLDGNFD 141 Query: 126 PEDLPCQ-----------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 P Q ++KGD + IAAA+++AKV RD MR H Sbjct: 142 YLASPRQPDLFAEAGNLVSSPEVSVETLVKGDGKAAVIAAAAVLAKVYRDAFMRSLHD-- 199 Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 P YG+ +VGY T H+ + E G S HR T++ Sbjct: 200 PGYGWARNVGYGTPAHKAGLAELGASVWHRKTWK 233 >gi|298346453|ref|YP_003719140.1| putative ribonuclease H [Mobiluncus curtisii ATCC 43063] gi|298236514|gb|ADI67646.1| possible ribonuclease H [Mobiluncus curtisii ATCC 43063] Length = 235 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 72/214 (33%), Positives = 105/214 (49%), Gaps = 32/214 (14%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILD------PNNI---PFGINDSKKISHKKRE 69 E + + G+DEVGRGALAGPV V +LD P+ P G+NDSK+++ ++R Sbjct: 22 HEGRLPLIGGMDEVGRGALAGPVCVGVAVLDQRSLDNPDFPQGFPVGLNDSKQLTARRRV 81 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSI 125 L + I + +I AS+ ID+ I A A + A+ L +P+ L+DG Sbjct: 82 ALQDPIQAWVRDFAIGQASNTEIDELGIMPALRLAGWRALNELDARGHLPQRLLLDGNFD 141 Query: 126 PEDLPCQ-----------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 P Q ++KGD + IAAA+++AKV RD MR H Sbjct: 142 YLASPRQPDLFAEAGNLVSSPEVSVETLVKGDGKAAVIAAAAVLAKVYRDAFMRSLHD-- 199 Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 P YG+ +VGY T H+ + E G S HR T++ Sbjct: 200 PGYGWARNVGYGTPAHKAGLAELGASVWHRKTWK 233 >gi|227545838|ref|ZP_03975887.1| possible ribonuclease H [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213954|gb|EEI81793.1| possible ribonuclease H [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 275 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 66/269 (24%), Positives = 108/269 (40%), Gaps = 77/269 (28%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII-------LDPNN--------- 52 P +LE + + + G DEVGRGALAGPV+V A I LD ++ Sbjct: 4 PTLDLERSLAAQGYDLITGFDEVGRGALAGPVMVGCAAIWACDLAPLDGDDSAELSGRTY 63 Query: 53 --IPFGINDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVE 109 +P G+ DSK ++ +RE +++++ A ++ AS+ ID+ I A A A+ Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123 Query: 110 NLQVIPRSALIDGRS-------IPEDLPC------------------QAFAVIKGDSISL 144 ++ L G + I E P + ++ G S + Sbjct: 124 QVERELGLRLGGGLTAKKAAGEIVEGRPGGSVGESIGNCGGSVRALPKVAGILDGPSDYI 183 Query: 145 SIAAASIIA-----------------------------KVTRDRLMRIAHK---KYPDYG 172 + A + A KVTRDRLM + +Y Y Sbjct: 184 TKALNTFDAPDVPIPADITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRYAAYE 243 Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + + GY +A H+ I E GP+ +HR+++ Sbjct: 244 WAHNKGYGSAAHRAAIAEHGPTPLHRVSW 272 >gi|46190774|ref|ZP_00121089.2| COG0164: Ribonuclease HII [Bifidobacterium longum DJO10A] gi|189439885|ref|YP_001954966.1| ribonuclease HII [Bifidobacterium longum DJO10A] gi|189428320|gb|ACD98468.1| Ribonuclease HII [Bifidobacterium longum DJO10A] Length = 279 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 65/273 (23%), Positives = 107/273 (39%), Gaps = 81/273 (29%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII-------LDPNN--------- 52 P +LE + + + G DEVGRGALAGPV+V A I LD ++ Sbjct: 4 PTLDLERSLAAQGYDLITGFDEVGRGALAGPVMVGCAAIWACDLAPLDGDDSAELSGRTY 63 Query: 53 --IPFGINDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVE 109 +P G+ DSK ++ +RE +++++ A ++ AS+ ID+ I A A A+ Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123 Query: 110 NLQVIPRSALIDGRSIP-----------EDLPC------------------QAFAVIKGD 140 ++ L +I E P + ++ G Sbjct: 124 QVERELGLRLGGESTIKKASGESAGKIVEGRPGGSVGESIGNCEGSVRALPKVAGILDGP 183 Query: 141 SISLSIAAASIIA-----------------------------KVTRDRLMRIAHK---KY 168 S ++ A + A KVTRDRLM + +Y Sbjct: 184 SDYITKALNTFDAPDVPIPADITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRY 243 Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 Y + + GY +A H+ I E GP+ +HR+++ Sbjct: 244 AAYEWAHNKGYGSAAHRAAIAEHGPTPLHRVSW 276 >gi|296129323|ref|YP_003636573.1| Ribonuclease H [Cellulomonas flavigena DSM 20109] gi|296021138|gb|ADG74374.1| Ribonuclease H [Cellulomonas flavigena DSM 20109] Length = 279 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 60/229 (26%), Positives = 95/229 (41%), Gaps = 46/229 (20%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP------------NNIPFGI 57 PH E + + VAG+DEVGRG+LA P + P G+ Sbjct: 30 PHLRHERALLRTGLRYVAGMDEVGRGSLA----------GPVSVGVVVVDVGTRSAPRGV 79 Query: 58 NDSKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHA---VENLQV 113 DSK ++ R L + + ++ AS ID I A A A V + Sbjct: 80 ADSKLLTPAARAALLPSLGRWGVARAVGHASPTEIDDRGIVAALRLAGTRALRSVLEVVE 139 Query: 114 IPRSALIDG-------------------RSIPEDLPCQAFAV-IKGDSISLSIAAASIIA 153 + ++DG + DL A + +K D ++AAAS++A Sbjct: 140 QVDAVVLDGSHDWLTPPEPDLFGTQSELFAPSPDLRVPAVHLRVKADRSCATVAAASVLA 199 Query: 154 KVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 K RD LM +P+Y +D + GY + +H ++E GP+ +HR ++R Sbjct: 200 KCERDALMVQHAAAHPEYRWDENKGYASPEHVAALRELGPTPLHRRSWR 248 >gi|18978153|ref|NP_579510.1| ribonuclease HII [Pyrococcus furiosus DSM 3638] gi|24638181|sp|Q8U036|RNH2_PYRFU RecName: Full=Ribonuclease HII; Short=RNase HII gi|18893958|gb|AAL81905.1| RNaseH II [Pyrococcus furiosus DSM 3638] Length = 224 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 99/207 (47%), Gaps = 28/207 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI- 80 + GIDE GRG GP+VVA +++D NI G+ DSK+++ +R+ L+ +ITS A Sbjct: 3 IGGIDEAGRGPAIGPLVVATVVVDEKNIEKLRNIGVKDSKQLTPHERKNLFSQITSIADD 62 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVE--NLQVIP-----RSALIDGRSI------PE 127 I S + ID + L+ A+ +LQ+ P +A +D Sbjct: 63 YKIVIVSPEEIDNRSGTMNELEVEKFALALNSLQIKPALIYADAADVDANRFASLIERRL 122 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQ 186 + + A K D+ ++AASI+AKV RD + K+Y D+G GYP+ K ++ Sbjct: 123 NYKAKIIAEHKADAKYPVVSAASILAKVVRDEEIEKLKKQYGDFG----SGYPSDPKTKK 178 Query: 187 VIKEK-----GPSCIHRLTFRPLRNLS 208 ++E I R T+ +R + Sbjct: 179 WLEEYYKKHNSFPPIVRRTWETVRKIE 205 >gi|269795662|ref|YP_003315117.1| ribonuclease HII [Sanguibacter keddieii DSM 10542] gi|269097847|gb|ACZ22283.1| ribonuclease HII [Sanguibacter keddieii DSM 10542] Length = 246 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 103/223 (46%), Gaps = 27/223 (12%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKIS 64 P E+E + +AG+DEVGRGALAGPV V ++D + P G+ DSK ++ Sbjct: 9 PVFADLEVETGMLAAGARRLAGMDEVGRGALAGPVSVGVCVVDLSTGPCPVGLTDSKVLT 68 Query: 65 HKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIP---RSALI 120 + R E I ++ ++ SAS ID I +A A A+ + + L+ Sbjct: 69 ARARTEYLPLIDDWSVATAVGSASAAEIDAVGIVRALRLAGQRALVAVARTAGPVDTVLL 128 Query: 121 DGRSI----PED-----------------LPCQAFAVIKGDSISLSIAAASIIAKVTRDR 159 DG PE L + +K D S+AAAS++AK RD Sbjct: 129 DGSHDWLTEPEPDLLTMLEGEEVAAPDGYLAPRVQTRVKADLSCASVAAASVVAKCERDA 188 Query: 160 LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 M K +P YG+ + GY +A+H + E GPS HR+++R Sbjct: 189 SMVQLAKDHPHYGWIGNKGYGSAQHVAALGEHGPSPFHRVSWR 231 >gi|154151483|ref|YP_001405101.1| ribonuclease HII [Candidatus Methanoregula boonei 6A8] gi|166226624|sp|A7I9P7|RNH2_METB6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|154000035|gb|ABS56458.1| ribonuclease HII [Methanoregula boonei 6A8] Length = 213 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 25/203 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAIISI 83 + G+DE G+G++ GP+V+A + + + FG+ DSK++S +RE L+ I ++ Sbjct: 2 ICGVDEAGKGSVLGPMVIAGVGVGSTEMIDGFGLRDSKQLSPSERERLFVLIKKKCKVAT 61 Query: 84 SSASHQYID--KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL-----------P 130 S ID + + T A HAV Q+ P A +D + P Sbjct: 62 VVISAAEIDAFRREMTLNTCVARAHAVVIAQLAPEIAYVDACDVNPFRYAETVRGYLSSP 121 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIK 189 C+ + DS ++AASI+AKVTRDR + KKY G GYP+ + + Sbjct: 122 CEIVSEHHADSTYPVVSAASIVAKVTRDREIAKLAKKYGQIG----SGYPSDPETIAYLN 177 Query: 190 EK-----GPSCIHRLTFRPLRNL 207 P I R +++ + L Sbjct: 178 AYIDEHRIPPPIARKSWKTVSTL 200 >gi|14278500|pdb|1IO2|A Chain A, Crystal Structure Of Type 2 Ribonuclease H From Hyperthermophilic Archaeon, Thermococcus Kodakaraensis Kod1 Length = 213 Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 28/207 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS-AI 80 +AGIDE GRG + GP+V+AA+++D N++P + DSKK++ K+RE+L+ +I Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62 Query: 81 ISISSASHQYI--DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE----------- 127 I I + +++ ++ A+ +L+V P D + E Sbjct: 63 YVILELPPDVIGSREGTLNEFEVENFAKALNSLKVKPDVIYADAADVDEERFARELGERL 122 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + + A K D I ++AASI+AKVTRDR + ++Y + G GYP+ + Sbjct: 123 NFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGYPSDPRTRA 178 Query: 188 I-----KEKG-PSCIHRLTFRPLRNLS 208 +E G I R ++ L+ ++ Sbjct: 179 FLENYYREHGEFPPIVRKGWKTLKKIA 205 >gi|57640740|ref|YP_183218.1| ribonuclease HII [Thermococcus kodakarensis KOD1] gi|7227922|sp|O74035|RNH2_PYRKO RecName: Full=Ribonuclease HII; Short=RNase HII gi|3551209|dbj|BAA32803.1| ribonuclease HII [Thermococcus kodakaraensis] gi|57159064|dbj|BAD84994.1| ribonuclease HII [Thermococcus kodakarensis KOD1] Length = 228 Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 28/207 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS-AI 80 +AGIDE GRG + GP+V+AA+++D N++P + DSKK++ K+RE+L+ +I Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62 Query: 81 ISISSASHQYI--DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE----------- 127 I I + +++ ++ A+ +L+V P D + E Sbjct: 63 YVILELPPDVIGSREGTLNEFEVENFAKALNSLKVKPDVIYADAADVDEERFARELGERL 122 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + + A K D I ++AASI+AKVTRDR + ++Y + G GYP+ + Sbjct: 123 NFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGYPSDPRTRA 178 Query: 188 I-----KEKG-PSCIHRLTFRPLRNLS 208 +E G I R ++ L+ ++ Sbjct: 179 FLENYYREHGEFPPIVRKGWKTLKKIA 205 >gi|229818328|ref|ZP_04448609.1| hypothetical protein BIFANG_03630 [Bifidobacterium angulatum DSM 20098] gi|229784198|gb|EEP20312.1| hypothetical protein BIFANG_03630 [Bifidobacterium angulatum DSM 20098] Length = 239 Score = 154 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 112/234 (47%), Gaps = 41/234 (17%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKK 62 P +LE + ++ + G DEVGRG+LAGPV+V A + ++ P G+ DSK Sbjct: 4 PTLDLEHTLADRQYDVIVGFDEVGRGSLAGPVMVGACAIRAQDVRDGAKEVPQGVADSKM 63 Query: 63 ISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI-----PR 116 ++ +RE + +++ A ++ +AS+ ID+ I A A A+ ++ Sbjct: 64 LTEHRREAIVDELKDWSAAWAVGAASNTEIDEWGISYALGVAALRALAEVERTLGIGDDG 123 Query: 117 SALIDGRSI----------PEDLPCQAF---------------AVIKGDSISLSIAAASI 151 +A+I G P D +A +KGD ++AAA++ Sbjct: 124 TAVIGGVKTRASVGAILDGPNDYITKALNTFEAPVVPVPADVVTKVKGDQHCATVAAAAV 183 Query: 152 IAKVTRDRLMRIA---HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAKVTRDRLM +Y Y ++ + GY + H+ I + GP+ +HR++++ Sbjct: 184 IAKVTRDRLMVSIAHSDPQYAPYEWEHNKGYGSKAHRAAIAQYGPTALHRISWK 237 >gi|134104116|pdb|2DFE|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-200)-C Length = 209 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 28/206 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS-AI 80 +AGIDE GRG + GP+V+AA+++D N++P + DSKK++ K+RE+L+ +I Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62 Query: 81 ISISSASHQYI--DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE----------- 127 I I + +++ ++ A+ +L+V P D + E Sbjct: 63 YVILELPPDVIGSREGTLNEFEVENFAKALNSLKVKPDVIYADAADVDEERFARELGERL 122 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + + A K D I ++AASI+AKVTRDR + ++Y + G GYP+ + Sbjct: 123 NFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGYPSDPRTRA 178 Query: 188 I-----KEKG-PSCIHRLTFRPLRNL 207 +E G I R ++ +++ Sbjct: 179 FLENYYREHGEFPPIVRKGWKTTQDM 204 >gi|315655024|ref|ZP_07907928.1| ribonuclease HII [Mobiluncus curtisii ATCC 51333] gi|315490680|gb|EFU80301.1| ribonuclease HII [Mobiluncus curtisii ATCC 51333] Length = 236 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 71/214 (33%), Positives = 105/214 (49%), Gaps = 32/214 (14%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILD------PNNI---PFGINDSKKISHKKRE 69 E + + G+DEVGRGALAGPV V ++D P+ P G+NDSK+++ ++R Sbjct: 23 HEGRLPLIGGMDEVGRGALAGPVCVGVAVVDQRSLENPDFPQGFPVGLNDSKQLTARRRV 82 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSI 125 L + I + +I AS+ ID+ I A A + A+ L +P+ L+DG Sbjct: 83 ALQDPIQAWVRDFAIGQASNTEIDELGIMPALRLAGWRALNELDARGHLPQRLLLDGNFD 142 Query: 126 PEDLPCQ-----------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 P Q ++KGD + IAAA+++AKV RD MR H Sbjct: 143 YLASPRQPDLFAGAGNLVSSPEVSVETLVKGDGKAAVIAAAAVLAKVYRDAFMRSLHD-- 200 Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 P YG+ +VGY T H+ + E G S HR T++ Sbjct: 201 PGYGWTRNVGYGTPAHKAGLAELGASVWHRKTWK 234 >gi|224006103|ref|XP_002292012.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220972531|gb|EED90863.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 341 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 64/257 (24%), Positives = 112/257 (43%), Gaps = 63/257 (24%) Query: 12 FELEAMVREKNMWPVAGIDEVG-RGALAGPVVVAAI--------ILDPN----------- 51 LE + + V G D+ G G +AGPVVVA+ +L + Sbjct: 83 LALETDLHSRGYQFVIGSDDSGGAGCIAGPVVVASCCLLQPFSAVLPLDVSTKQSTAADK 142 Query: 52 -------NIPFGINDSKKISHKKREELYEKITSS---AIISISSASHQYIDKHNIHKATL 101 I +NDSK ++ ++R ++Y I + +S++ S Q ID N+ +AT Sbjct: 143 LLSQSEMEIMAIVNDSKTLTPQQRIDVYNVICAHPDVFAVSVAQRSPQEIDDINLTRATQ 202 Query: 102 DAIYHAVE------NLQVIPRSALIDGRSIPEDLPCQ----------------------- 132 A ++E NL A++DG+ P+ Q Sbjct: 203 LAFAESIESLVENYNLPFDKIYAIVDGKVSPKLYALQSSDTESSMQQQQSTQQSQQAAPK 262 Query: 133 ---AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 GD+ ++A +SI+A+V+RD ++ H +YP YGFD ++GY + +H + + Sbjct: 263 RFSVRPYTNGDANVFTVALSSIVARVSRDAIIAELHDQYPSYGFDENLGYGSREHVEAVH 322 Query: 190 EKGP-SCIHRLTFRPLR 205 G + +HRL+F+ ++ Sbjct: 323 RLGALTGVHRLSFKQVK 339 >gi|213029071|ref|ZP_03343518.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 109 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 47/104 (45%), Positives = 61/104 (58%), Gaps = 1/104 (0%) Query: 103 AIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162 A+ AV L + P LIDG PE LP + AV+KGDS I+AASI+AKVTRD M Sbjct: 1 AMQRAVAGLHIAPEYVLIDGNRCPE-LPVPSMAVVKGDSRVAEISAASILAKVTRDAEMA 59 Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 +P YGF H GYPTA H + + + G + HR +F P++ Sbjct: 60 ALDIVFPQYGFAQHKGYPTAFHLEKLAQYGATAHHRRSFAPVKR 103 >gi|213691335|ref|YP_002321921.1| Ribonuclease H [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522796|gb|ACJ51543.1| Ribonuclease H [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457405|dbj|BAJ68026.1| ribonuclease HII [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 279 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 71/275 (25%), Positives = 117/275 (42%), Gaps = 85/275 (30%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII-------LDPNN--------- 52 P +LE + + + G DEVGRGALAGPV+V A I LD ++ Sbjct: 4 PTLDLERSLAAQGYDLITGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63 Query: 53 --IPFGINDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNI------------- 96 +P G+ DSK ++ +RE +++++ A ++ AS+ ID+ I Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALS 123 Query: 97 ----------------HKATLDAIYHAVEN----------------LQVIPRSALI---- 120 KA++++ VE ++ +P+ A I Sbjct: 124 QVERELGLRLGGRLAARKASMESAGEIVEGHPGDSVGESIGNCRESVRALPKVAGILDGP 183 Query: 121 -----------DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK-- 167 D +P +P +KGD ++A A++IAKVTRDRLM + Sbjct: 184 SDYITKALNTFDAPDVP--IPADITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNP 241 Query: 168 -YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 Y Y + + GY +A H+ I E GP+ +HR+++ Sbjct: 242 CYAAYEWAHNKGYGSAAHRTAIAEHGPTPLHRVSW 276 >gi|294623977|ref|ZP_06702767.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601724|gb|EFF45671.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 132 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 47/102 (46%), Positives = 64/102 (62%) Query: 104 IYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163 + AVE + + A IDG +P+ LPC A A+I GD++ +I AASI+AKVTRDRLM Sbjct: 1 MRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALDRAIMAASIVAKVTRDRLMHE 60 Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 H ++P+Y FD H GY T H ++ GP HR +F P+R Sbjct: 61 LHTRHPEYRFDQHKGYSTPVHLAALQTHGPCPQHRRSFAPVR 102 >gi|239917439|ref|YP_002956997.1| ribonuclease HII [Micrococcus luteus NCTC 2665] gi|281414071|ref|ZP_06245813.1| ribonuclease HII [Micrococcus luteus NCTC 2665] gi|239838646|gb|ACS30443.1| ribonuclease HII [Micrococcus luteus NCTC 2665] Length = 250 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 65/198 (32%), Positives = 97/198 (48%), Gaps = 21/198 (10%) Query: 25 PVAGIDEVGRGALAGPVVV--AAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81 VAG+DEVGRGALAGPVVV A+ L + DSK ++ ++R L +I A + Sbjct: 36 LVAGMDEVGRGALAGPVVVGVCAVWLPAAGQIPAVRDSKALTDRRRRALVPQIEDWAAGV 95 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENL----QVIPRSALIDGRSI------------ 125 ++ AS ID H + A A A L P + ++DGR Sbjct: 96 ALGEASPAEIDAHGVSAALGLAGRRAWAALCAAVGQEPVALVLDGRDDWLSRSDPDAGPA 155 Query: 126 --PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 P LP +++ + ++AAASI AKV RD +M ++P YG+ + GY +A Sbjct: 156 PAPRPLPPVPTMLVRAEDRCATVAAASIAAKVARDDVMIALDAEHPGYGWAGNKGYGSAA 215 Query: 184 HQQVIKEKGPSCIHRLTF 201 H+ + E+G S HR ++ Sbjct: 216 HRAALTERGASEQHRRSW 233 >gi|78047020|ref|YP_363195.1| ribonuclease HII [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035450|emb|CAJ23095.1| ribonuclease HII [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 129 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 47/102 (46%), Positives = 64/102 (62%) Query: 104 IYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163 + AVE + + A IDG +P+ LPC A A+I GD++ +I AASI+AKVTRDRLM Sbjct: 1 MRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDALDRAIMAASIVAKVTRDRLMHE 60 Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 H ++P+Y FD H GY T H ++ GP HR +F P+R Sbjct: 61 LHTRHPEYRFDQHKGYSTPVHLAALQTHGPCPQHRRSFAPVR 102 >gi|77386118|gb|ABA77535.1| ribonuclease HII [Campylobacter jejuni] Length = 159 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 7/165 (4%) Query: 41 VVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKAT 100 +++AA L N G+ DSKK+S KKREELYE I ++ I + S + ID + Sbjct: 1 MMMAACKL--NKKLDGLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQIDALGLSTCL 58 Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ-AFAVIKGDSISLSIAAASIIAKVTRDR 159 + ++ + L DG + +L IK D+ L ++AASI+AKV++DR Sbjct: 59 KTGLKLIKKHFKTENNF-LYDGNT---NLGINGIKTQIKADASILQVSAASILAKVSKDR 114 Query: 160 LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +M K +P Y F+ + Y T H+++I + G +HR +F+ L Sbjct: 115 VMNFLAKDFPCYEFEKNKAYGTKAHKELIAKFGICKLHRKSFKLL 159 >gi|4514315|dbj|BAA75362.1| RNaseH [Bacillus halodurans] Length = 192 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 53/139 (38%), Positives = 79/139 (56%), Gaps = 3/139 (2%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + E + K VAG+DEVGRG LAGPVV AA+IL + G+ DSKK++ Sbjct: 56 MEHEEMLAYEKDLWAKGYEHVAGLDEVGRGPLAGPVVTAAVILPKDVQLPGLTDSKKLAK 115 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 + RE Y++I A+ S++ ID+ NI++AT + A++ L V P + L+D + Sbjct: 116 ETRESFYDRIKEVALAWSVAIVPVTVIDEVNIYQATKQGMMSAIDQLSVNPDALLLDAMN 175 Query: 125 IPEDLPCQAFAVIKGDSIS 143 +P LP Q+ +IKGD S Sbjct: 176 LPLSLPQQS--LIKGDQKS 192 >gi|269955973|ref|YP_003325762.1| Ribonuclease H [Xylanimonas cellulosilytica DSM 15894] gi|269304654|gb|ACZ30204.1| Ribonuclease H [Xylanimonas cellulosilytica DSM 15894] Length = 272 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 90/222 (40%), Gaps = 35/222 (15%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVV-------VAAIILDPNNIPFGINDSKK 62 P E + VAG+DEVGRGALAGPV A P G+ DSK Sbjct: 18 PTLRTERALISSGARLVAGMDEVGRGALAGPVSVGVVVVDAA-----TRTAPKGVADSKL 72 Query: 63 ISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP---RSA 118 ++ RE L ++ ++ A ID H I A A A+ ++ + Sbjct: 73 LTPAAREALVPQLQRWPVAWAVGHAGPAEIDAHGIIAALRIAGRRALSQVRRVCGDVDLV 132 Query: 119 LIDGRSIPEDLPC-------------------QAFAVIKGDSISLSIAAASIIAKVTRDR 159 L+DG P ++K D S+AAAS++AKV RD Sbjct: 133 LLDGSHDWLTRPQADLFEAVELDVAGAPETDPTVRTLVKADLQCASVAAASVLAKVERDL 192 Query: 160 LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 L+ ++YP Y +D + GY H ++ G + HR ++ Sbjct: 193 LLTRLARQYPAYAWDQNKGYSAPAHLDALRLHGTTPQHRRSW 234 >gi|289524535|ref|ZP_06441389.1| ribonuclease HII [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502226|gb|EFD23390.1| ribonuclease HII [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 129 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 51/118 (43%), Positives = 70/118 (59%) Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 +A+ +ID+ NI +ATL A+ A +L + P ++DG DL A+ K D L Sbjct: 3 AANPWFIDRANILQATLWAMEKAASSLPLSPDIVIVDGNQKIPDLSFPQKALPKADKNVL 62 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 + AASI+AKV RDR+M K YPDYGF H GYPT +H++ + G S IHR TF+ Sbjct: 63 VVGAASIVAKVIRDRVMCAYDKLYPDYGFAVHKGYPTKEHRRALALMGASPIHRKTFK 120 >gi|289178076|gb|ADC85322.1| Ribonuclease HII [Bifidobacterium animalis subsp. lactis BB-12] Length = 290 Score = 147 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 74/256 (28%), Positives = 113/256 (44%), Gaps = 67/256 (26%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKK 62 P F LE + + G DEVGRG+LAGPV+V A N+ P + DSK Sbjct: 35 PSFALERQIAADGFDVIVGFDEVGRGSLAGPVMVGAAAFLARNLDEAQTAMPQYLADSKT 94 Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---------- 111 ++ +RE LYE + + +I SAS+ ID I A A A++ + Sbjct: 95 LTEHRRESLYEPLQAWVDGFAIGSASNAEIDAWGISHALGIAALRALDGVERALGMGSPG 154 Query: 112 --------------------QVIPRS--------ALIDGRSIPEDL-------------- 129 + P+ A++DG P D Sbjct: 155 DSEIRGFDERCKYSGTWAYTKHSPQQHADGLHVGAILDG---PNDYISKALGTFEAPAVP 211 Query: 130 -PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA---HKKYPDYGFDSHVGYPTAKHQ 185 P Q ++K D+ S+AAA+++AKVTRDRLM H +Y YG++ + GY + H+ Sbjct: 212 MPAQVRTLVKADAQCASVAAAAVLAKVTRDRLMEQLARDHAEYARYGWERNKGYGSKAHR 271 Query: 186 QVIKEKGPSCIHRLTF 201 + I + GPS +HR+++ Sbjct: 272 EAIAQCGPSDLHRVSW 287 >gi|70606743|ref|YP_255613.1| ribonuclease HII [Sulfolobus acidocaldarius DSM 639] gi|109896186|sp|Q4JA60|RNH2_SULAC RecName: Full=Ribonuclease HII; Short=RNase HII gi|68567391|gb|AAY80320.1| ribonuclease HII [Sulfolobus acidocaldarius DSM 639] Length = 212 Score = 147 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 24/205 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA 79 + GIDE GRG+L GP+VVA + +D N + F G+ DSKK++ KKRE L+ I + Sbjct: 1 MILVGIDEAGRGSLIGPMVVAGVAIDSNFLKFLSEIGVKDSKKLTRKKREYLFGVILEYS 60 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQV-IPRSALIDGRSIPEDLPCQAFAV- 136 IS+ A + ID N+++ T A+ + ++ V P +D + + + Sbjct: 61 YAISLVKAYPEEIDSENLNEITYRAMIQIIHSMSVYNPSIVTVDKVGNASAVEREIININ 120 Query: 137 ------IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----TAKHQQ 186 D + ++AASIIAKV RD ++ K Y D+G GYP T + + Sbjct: 121 SSPRVENNADVKYVEVSAASIIAKVVRDNIINELKKTYGDFG----SGYPGDKKTVEWIK 176 Query: 187 VIKEKGPS---CIHRLTFRPLRNLS 208 + + P+ I R +++ L++++ Sbjct: 177 DLYSRQPTYALPIIRRSWKILQDIA 201 >gi|229821017|ref|YP_002882543.1| Ribonuclease H [Beutenbergia cavernae DSM 12333] gi|229566930|gb|ACQ80781.1| Ribonuclease H [Beutenbergia cavernae DSM 12333] Length = 273 Score = 147 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 95/230 (41%), Gaps = 49/230 (21%) Query: 10 PHFELEAMVREK-NMWPVAGIDEVGRGALA--------------GPVVVAAIILDPNNIP 54 P E + E VAG+DEVGRG LA G P Sbjct: 18 PSRAFERELAESVPGGLVAGMDEVGRGCLAGPVSVGVVVVGPATG------------RTP 65 Query: 55 FGINDSKKISHKKREELYEKITSSAIISISSASHQ-YIDKHNIHKATLDAIYHAVENL-- 111 G+ DSK ++ RE L + A S + + ID+ I A A + A+ +L Sbjct: 66 AGLRDSKLLTPAARERLVPPVRRWAFASAVAHASAAEIDEIGIIAALRLAGHRALGSLAA 125 Query: 112 -QVIPRSALIDGRSI------------------PEDLPCQAFAVIKGDSISLSIAAASII 152 V+P + ++DG P +K D +AAAS++ Sbjct: 126 DGVVPGALILDGSHDWLTPPQPDLFEALEPPVAPTAFVPPVRMRVKADLTCSVVAAASVL 185 Query: 153 AKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 AK RD LMR+ H +PD+ + S+ GY +H ++E GP+ +HR ++R Sbjct: 186 AKCERDGLMRVLHDDHPDFDWASNKGYAAPEHLAALRELGPTVLHRRSWR 235 >gi|205355751|ref|ZP_03222521.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CG8421] gi|205346528|gb|EDZ33161.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CG8421] Length = 159 Score = 147 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 7/165 (4%) Query: 41 VVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKAT 100 +++AA L N G+ DSKK+S KKREELYE I ++ I + S + ID + Sbjct: 1 MMMAACKL--NKQLDGLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQIDALGLSTCL 58 Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ-AFAVIKGDSISLSIAAASIIAKVTRDR 159 + ++ + L DG + +L IK D+ L ++AASI+AKV++DR Sbjct: 59 KKGLKLIKKHFKTENNF-LYDGNT---NLGINGIKTQIKADTSILQVSAASILAKVSKDR 114 Query: 160 LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +M K +P Y F+ + Y T H++ I + G +HR +F+ L Sbjct: 115 VMNFLAKDFPCYEFEKNKAYGTKAHKEFIAKFGICKLHRKSFKLL 159 >gi|134045249|ref|YP_001096735.1| ribonuclease HII [Methanococcus maripaludis C5] gi|189043624|sp|A4FWE5|RNH2_METM5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|132662874|gb|ABO34520.1| RNase HII [Methanococcus maripaludis C5] Length = 239 Score = 147 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 62/216 (28%), Positives = 97/216 (44%), Gaps = 32/216 (14%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI 75 E N + G+DE GRG + GP+V+A++ ++ ++P G+ DSK++S KKREELY KI Sbjct: 14 ESNGKIIVGLDEAGRGPVIGPMVIASVKINEKDLPRLDDLGLRDSKQLSKKKREELYTKI 73 Query: 76 TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL------QVIPRSALIDGRSIPE-- 127 + + + + ID+ A L + S ID S E Sbjct: 74 SEICDVKKVVINPEKIDEQMEIINLNKIELGAFSKLANHFIKENENISIYIDACSSNEQS 133 Query: 128 ----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + + A K D ++AASIIAKVTRD ++ K + + G Sbjct: 134 FSNQFKAKLINKNVEIIAEHKADENYKIVSAASIIAKVTRDNVIEEYKKTFGEIG----S 189 Query: 178 GYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207 GYP+ K ++ +K G I R ++ +NL Sbjct: 190 GYPSDPKTKKFLKNYVHENKGLPKIARKSWATSKNL 225 >gi|323359714|ref|YP_004226110.1| ribonuclease HII [Microbacterium testaceum StLB037] gi|323276085|dbj|BAJ76230.1| ribonuclease HII [Microbacterium testaceum StLB037] Length = 217 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 69/209 (33%), Positives = 108/209 (51%), Gaps = 19/209 (9%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISH 65 P LE + +++ +A DEVGRGALAGPV V A ++DP+ +P G+ DSK + Sbjct: 4 PTLTLERRLLKEHALVIA-CDEVGRGALAGPVAVGAAVIDPSRSRKRVPTGLRDSKLVPE 62 Query: 66 KKREELYEKITSSAII---SISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSAL 119 +R E+ + ++A + ++ AS + ID+ I +A A A+ +L V+P AL Sbjct: 63 ARRPEVAAR--AAAFVQHSAVGWASSEEIDEIGIIRALGLAAVRAIADLRAHGVVPEDAL 120 Query: 120 I--DGRSIP----EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 + DG + + ++K D S AAAS+IAKV RD +M H P YG+ Sbjct: 121 VILDGNHDYITPAGESGLRVQPIVKADRDCASAAAASVIAKVARDTVMTYLHDDLPAYGW 180 Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 + GY + H++ I G S HR ++ Sbjct: 181 ARNKGYASLDHREAISAHGMSVHHRHSWA 209 >gi|315604543|ref|ZP_07879606.1| ribonuclease HII [Actinomyces sp. oral taxon 180 str. F0310] gi|315313555|gb|EFU61609.1| ribonuclease HII [Actinomyces sp. oral taxon 180 str. F0310] Length = 231 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 72/216 (33%), Positives = 97/216 (44%), Gaps = 29/216 (13%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKR 68 ELE + ++ VAG+DEVGRGALAGPV V ++ + P G+ DSK +S ++R Sbjct: 5 SRELEYSLAQR-WGVVAGMDEVGRGALAGPVAVGVALVGADAPAVPGGLTDSKALSPRRR 63 Query: 69 EELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRS 124 E L E I S + S ++ AS ID+ I A A A+ + P L+DG Sbjct: 64 EALVEPIHSWVLASCVAYASAAEIDRWGIVCALRLAGRRALAGVVAKGHAPGGVLLDGSH 123 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKV------------------TRDRLMRIAHK 166 +P A D A + +V RDRLMR A Sbjct: 124 DWLSIPDDLCAADGPD--YPDCGALPVHTQVKADASCAVVAAASVLAKVARDRLMREAED 181 Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 P YG+ S+ GY +A H Q I G S HR T+R Sbjct: 182 --PGYGWASNKGYGSAAHAQAIARLGVSDFHRRTWR 215 >gi|289704584|ref|ZP_06501017.1| ribonuclease HII [Micrococcus luteus SK58] gi|289558704|gb|EFD51962.1| ribonuclease HII [Micrococcus luteus SK58] Length = 250 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 64/198 (32%), Positives = 95/198 (47%), Gaps = 21/198 (10%) Query: 25 PVAGIDEVGRGALAGPVVV--AAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81 VAG+DEVGRGALAGPVVV A+ L + DSK ++ ++R L +I A + Sbjct: 36 LVAGMDEVGRGALAGPVVVGVCAVWLPAAGQIPPVRDSKALTDRRRRVLIPQIEDWAAGV 95 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENL----QVIPRSALIDGRSI------------ 125 ++ A ID I A A A L P + ++DGR Sbjct: 96 ALGEAGPAEIDALGISAALGLAGRRAWAALCAAVGQEPVALVLDGRDDWLSRSDPDAGPA 155 Query: 126 --PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 P LP + +++ + ++AAASI AKV RD +M +P YG+ + GY +A Sbjct: 156 PAPRPLPPEPTMLVRAEDRCATVAAASIAAKVARDDVMIALDAAHPGYGWAGNKGYGSAA 215 Query: 184 HQQVIKEKGPSCIHRLTF 201 H+ + E+G S HR ++ Sbjct: 216 HRAALAERGASEQHRRSW 233 >gi|183601863|ref|ZP_02963232.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis HN019] gi|219682777|ref|YP_002469160.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis AD011] gi|241190353|ref|YP_002967747.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195759|ref|YP_002969314.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218748|gb|EDT89390.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis HN019] gi|219620427|gb|ACL28584.1| ribonuclease [Bifidobacterium animalis subsp. lactis AD011] gi|240248745|gb|ACS45685.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250313|gb|ACS47252.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793340|gb|ADG32875.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis V9] Length = 258 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 74/256 (28%), Positives = 113/256 (44%), Gaps = 67/256 (26%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKK 62 P F LE + + G DEVGRG+LAGPV+V A N+ P + DSK Sbjct: 3 PSFALERQIAADGFDVIVGFDEVGRGSLAGPVMVGAAAFLARNLDEAQTAMPQYLADSKT 62 Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---------- 111 ++ +RE LYE + + +I SAS+ ID I A A A++ + Sbjct: 63 LTEHRRESLYEPLQAWVDGFAIGSASNAEIDAWGISHALGIAALRALDGVERALGMGSPG 122 Query: 112 --------------------QVIPRS--------ALIDGRSIPEDL-------------- 129 + P+ A++DG P D Sbjct: 123 DSEIRGFDERCKYSGTWAYTKHSPQQHADGLHVGAILDG---PNDYISKALGTFEAPAVP 179 Query: 130 -PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA---HKKYPDYGFDSHVGYPTAKHQ 185 P Q ++K D+ S+AAA+++AKVTRDRLM H +Y YG++ + GY + H+ Sbjct: 180 MPAQVRTLVKADAQCASVAAAAVLAKVTRDRLMEQLARDHAEYARYGWERNKGYGSKAHR 239 Query: 186 QVIKEKGPSCIHRLTF 201 + I + GPS +HR+++ Sbjct: 240 EAIAQCGPSDLHRVSW 255 >gi|88602504|ref|YP_502682.1| ribonuclease HII [Methanospirillum hungatei JF-1] gi|115305550|sp|Q2FP80|RNH2_METHJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|88187966|gb|ABD40963.1| RNase HII [Methanospirillum hungatei JF-1] Length = 212 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 25/203 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + G+DE G+G++ GP+VVAA+ + I G+ DSKK+S K RE++ I + SI Sbjct: 2 ICGVDEAGKGSVLGPMVVAAVGCTDMDDLIALGVADSKKLSSKSREKISADIKAQFPFSI 61 Query: 84 SSASHQYIDKHN--IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL-----------P 130 + ID+ + + A HA + + A +D + E+ Sbjct: 62 VIRTAHDIDELRRTMTMNEIVARSHAEALIPLNCTCAYVDACDVSEERYEETVSSFSPPD 121 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIK 189 C A K DS+ ++AASIIAKV RDR++ K+Y D G GYP+ + Sbjct: 122 CTIVARHKADSLFPPVSAASIIAKVERDRIIEELSKEYGDIG----SGYPSDPVTITYLT 177 Query: 190 EKG-----PSCIHRLTFRPLRNL 207 + P I R ++ ++NL Sbjct: 178 KYIRHHNQPPVIARSSWETVKNL 200 >gi|14591420|ref|NP_143500.1| ribonuclease HII [Pyrococcus horikoshii OT3] gi|7227917|sp|O59351|RNH2_PYRHO RecName: Full=Ribonuclease HII; Short=RNase HII gi|50513813|pdb|1UAX|A Chain A, Crystal Structure Of The Ribonuclease H2 From Pyrococcus Horikoshii Ot3 gi|50513814|pdb|1UAX|B Chain B, Crystal Structure Of The Ribonuclease H2 From Pyrococcus Horikoshii Ot3 gi|3258079|dbj|BAA30762.1| 220aa long hypothetical ribonuclease H II [Pyrococcus horikoshii OT3] Length = 220 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 99/207 (47%), Gaps = 28/207 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS-AI 80 VAG+DE GRG + GP+V+ ++D NI G+ DSK+++ +RE+L+ K+ Sbjct: 3 VAGVDEAGRGPVIGPLVIGVAVIDEKNIERLRDIGVKDSKQLTPGQREKLFSKLIDILDD 62 Query: 81 ISISSASHQYIDKHNIHKATLDAIYH--AVENLQVIPRSALIDGRSIPED---------- 128 + + + ID+ + L+A A+ +L++ P+ +D + Sbjct: 63 YYVLLVTPKEIDERHHSMNELEAEKFVVALNSLRIKPQKIYVDSADVDPKRFASLIKAGL 122 Query: 129 -LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQ 186 A K D+ ++AASIIAKVTRDR + +KY ++G GYP+ + ++ Sbjct: 123 KYEATVIAEHKADAKYEIVSAASIIAKVTRDREIEKLKQKYGEFG----SGYPSDPRTKE 178 Query: 187 VI----KEKG-PSCIHRLTFRPLRNLS 208 + K+ G I R T+ R + Sbjct: 179 WLEEYYKQYGDFPPIVRRTWETARKIE 205 >gi|293189838|ref|ZP_06608552.1| ribonuclease HII [Actinomyces odontolyticus F0309] gi|292821253|gb|EFF80198.1| ribonuclease HII [Actinomyces odontolyticus F0309] Length = 223 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 72/215 (33%), Positives = 103/215 (47%), Gaps = 26/215 (12%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVA-AII-LDPNNIPFGINDSKKISHKKR 68 +LE + + VAG+DEVGRGALAGPV V A I +D +P G+ DSK ++ ++R Sbjct: 5 SRDLEVSLARR-WGIVAGMDEVGRGALAGPVAVGVAFIGIDAAPVPEGLTDSKALTTRRR 63 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHA---VENLQVIPRSALIDGRS 124 E L + + + ++ AS Q ID I A A + A V + ++P L+DG Sbjct: 64 EALVDPVREWTLACAVGYASPQEIDDWGIIAALRLAGWRALAEVASHGLVPGGVLLDGSH 123 Query: 125 IPEDLPCQAFAVIKGDSISLSI-----------------AAASIIAKVTRDRLMRIAHKK 167 P F I G + AAAS++AKV RD LM Sbjct: 124 DWLSAPDDLFGAIDGPGDPFGVDLPVQMQVKADASCAVVAAASVLAKVERDHLMAELED- 182 Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 P YG+ S+ GY +A H + I E G S HR +++ Sbjct: 183 -PGYGWASNKGYGSAAHTRAIVELGVSDQHRRSWK 216 >gi|150402543|ref|YP_001329837.1| ribonuclease HII [Methanococcus maripaludis C7] gi|189043625|sp|A6VGW0|RNH2_METM7 RecName: Full=Ribonuclease HII; Short=RNase HII gi|150033573|gb|ABR65686.1| ribonuclease HII [Methanococcus maripaludis C7] Length = 239 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 61/216 (28%), Positives = 97/216 (44%), Gaps = 32/216 (14%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI 75 E N + G+DE GRG + GP+V+A++ ++ N++P G+ DSK+++ KKREELY KI Sbjct: 14 EFNGKIIVGLDEAGRGPVIGPMVIASVKINENDLPKLHDLGLKDSKQLTKKKREELYIKI 73 Query: 76 TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL------QVIPRSALIDGRSIPE-- 127 + + + ID+ A L + S ID S E Sbjct: 74 SEICDVKKIVIDPEKIDEQMEIINLNKIELGAFSKLANHFIKENENISIYIDACSSNEQS 133 Query: 128 ----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + + A K D ++AASIIAKVTRD ++ + + + G Sbjct: 134 FSNQFKAKLINKNVEIIAEHKADENYKIVSAASIIAKVTRDNVIEEYKEIFGEIG----S 189 Query: 178 GYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207 GYP+ K ++ +K G I R ++ +NL Sbjct: 190 GYPSDPKTKKFLKNYVHENKGLPKIARKSWATSKNL 225 >gi|284161145|ref|YP_003399768.1| ribonuclease HII [Archaeoglobus profundus DSM 5631] gi|284011142|gb|ADB57095.1| ribonuclease HII [Archaeoglobus profundus DSM 5631] Length = 211 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 96/204 (47%), Gaps = 25/204 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII 81 +AGIDE G+G + GP+V+ ++ D + + G+ DSKK+ +KREELY I S + Sbjct: 2 IAGIDEAGKGPVIGPLVICGVLCDEETVEYLKSVGVKDSKKLDRRKREELYNIIKSLCKV 61 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIP---------EDLP 130 + S + +++ + + + + A + ++P+ ID I E Sbjct: 62 KVLKISVEDLNRLMEYMSINEILKRAYVEIIRSLMPKVVYIDCPDINVERFKHEIEERTG 121 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH-----Q 185 + FA K D I ++ ASI+AKV RD + K Y D+G GYP+ + Sbjct: 122 VEVFASHKADEIYPIVSIASIVAKVERDFEIDKLKKIYGDFG----SGYPSDLRTIEFLR 177 Query: 186 QVIKEK-GPSCIHRLTFRPLRNLS 208 ++E I R ++ L+ L+ Sbjct: 178 SYLREHKSFPPIVRKRWKTLKRLT 201 >gi|14520734|ref|NP_126209.1| ribonuclease HII [Pyrococcus abyssi GE5] gi|11387114|sp|Q9V1A9|RNH2_PYRAB RecName: Full=Ribonuclease HII; Short=RNase HII gi|5457950|emb|CAB49440.1| rnhB ribonuclease HII [Pyrococcus abyssi GE5] Length = 224 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 102/207 (49%), Gaps = 28/207 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS-AI 80 VAG DE GRG + GP+V+ A +++ + I G+ DSK+++ +RE+L+++I Sbjct: 3 VAGADEAGRGPVIGPLVIVAAVVEEDKIRSLTKLGVKDSKQLTPAQREKLFDEIVKVLDD 62 Query: 81 ISISSASHQYID--KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED---------- 128 S+ S Q ID K ++++ ++ A+ +L+V P ID + + Sbjct: 63 YSVVIVSPQDIDGRKGSMNELEVENFVKALNSLKVKPEVIYIDSADVKAERFAENIRSRL 122 Query: 129 -LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQ 186 + A K D+ ++AASI+AKV RDR + +Y D+G GYP+ + ++ Sbjct: 123 AYEAKVVAEHKADAKYEIVSAASILAKVIRDREIEKLKAEYGDFG----SGYPSDPRTKK 178 Query: 187 VIKE----KG-PSCIHRLTFRPLRNLS 208 ++E G I R T+ + + Sbjct: 179 WLEEWYSKHGNFPPIVRRTWDTAKKIE 205 >gi|146303444|ref|YP_001190760.1| ribonuclease HII [Metallosphaera sedula DSM 5348] gi|145701694|gb|ABP94836.1| RNase HII [Metallosphaera sedula DSM 5348] Length = 208 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 63/197 (31%), Positives = 102/197 (51%), Gaps = 23/197 (11%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI-I 81 GIDE GRG L GP+VV + L+ +I G+ DSKK++ KKREEL++ I S + + Sbjct: 3 IGIDEAGRGCLIGPMVVVGVALNERSIVALKQSGVKDSKKLTRKKREELFDLILSESEGV 62 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVI-PRSALIDGR-------SIPEDLPCQA 133 +++ A + ID +N++ T + ++ L + P +D EDL + Sbjct: 63 AVAKALPEEIDNNNLNSLTYTKVIEIIDALSWLNPEVVTVDKVGKEIEVIRAIEDLGFKP 122 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA-KHQQVIKEK- 191 V K D + + ++ASI+AKV RDRL+ K++ D+G GYP+ K Q + + Sbjct: 123 NVVHKADELFVEASSASIVAKVIRDRLIESLKKEFGDFG----SGYPSDRKTVQWVLDLV 178 Query: 192 --GPSC--IHRLTFRPL 204 G I R +++ L Sbjct: 179 SRGEEPPNIIRRSWKLL 195 >gi|154509166|ref|ZP_02044808.1| hypothetical protein ACTODO_01687 [Actinomyces odontolyticus ATCC 17982] gi|153798800|gb|EDN81220.1| hypothetical protein ACTODO_01687 [Actinomyces odontolyticus ATCC 17982] Length = 223 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 71/215 (33%), Positives = 101/215 (46%), Gaps = 26/215 (12%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVA-AII-LDPNNIPFGINDSKKISHKKR 68 +LE + + VAG+DEVGRGALAGPV V A I +D +P G+ DSK ++ ++R Sbjct: 5 SRDLEVSLARR-WGIVAGMDEVGRGALAGPVAVGVAFIGIDAAPVPEGLTDSKALTARRR 63 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHA---VENLQVIPRSALIDGRS 124 E L + + + ++ AS Q ID I A A A V + ++P L+DG Sbjct: 64 EALVDPVREWTLACAVGYASPQEIDDWGIIAALRLAGRRALAEVASHGLVPGGVLLDGSH 123 Query: 125 IPEDLPCQAFAVIKGDSISLSI-----------------AAASIIAKVTRDRLMRIAHKK 167 P F I G + AAAS++AKV RD LM Sbjct: 124 DWLSAPDDLFGAIDGPGDPFGVDLPVQMQVKADASCAVVAAASVLAKVERDHLMAELED- 182 Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 P YG+ S+ GY + H + I E G S HR +++ Sbjct: 183 -PGYGWASNKGYGSTAHTRAIVELGVSDQHRRSWK 216 >gi|237752170|ref|ZP_04582650.1| rnase [Helicobacter winghamensis ATCC BAA-430] gi|229376412|gb|EEO26503.1| rnase [Helicobacter winghamensis ATCC BAA-430] Length = 161 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 5/158 (3%) Query: 50 PNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVE 109 P ++ + DSK +S KKR+ L + A I ID + +A+ + Sbjct: 7 PESLKNSLRDSKTLSQKKRDALANILKDYATFKIIKKEANEIDTKGLSACIKEALQEILS 66 Query: 110 NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 + + DG +P + KGDS +I+AASI+AK +D M H YP Sbjct: 67 --TIYAPFYIFDGN-CNFKIPH-LKTLTKGDSKLHTISAASILAKSAKDAEMLEFHALYP 122 Query: 170 DYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 Y F + GY T H Q I G S IHR ++R +++L Sbjct: 123 HYDFARNKGYGTKAHIQAIATHGLSPIHRKSYR-IKSL 159 >gi|227826588|ref|YP_002828367.1| ribonuclease HII [Sulfolobus islandicus M.14.25] gi|227829230|ref|YP_002831009.1| ribonuclease HII [Sulfolobus islandicus L.S.2.15] gi|229577999|ref|YP_002836397.1| ribonuclease HII [Sulfolobus islandicus Y.G.57.14] gi|229583752|ref|YP_002842253.1| ribonuclease HII [Sulfolobus islandicus M.16.27] gi|238618674|ref|YP_002913499.1| ribonuclease HII [Sulfolobus islandicus M.16.4] gi|284996585|ref|YP_003418352.1| hypothetical protein LD85_0182 [Sulfolobus islandicus L.D.8.5] gi|227455677|gb|ACP34364.1| ribonuclease HII [Sulfolobus islandicus L.S.2.15] gi|227458383|gb|ACP37069.1| ribonuclease HII [Sulfolobus islandicus M.14.25] gi|228008713|gb|ACP44475.1| ribonuclease HII [Sulfolobus islandicus Y.G.57.14] gi|228018801|gb|ACP54208.1| ribonuclease HII [Sulfolobus islandicus M.16.27] gi|238379743|gb|ACR40831.1| ribonuclease HII [Sulfolobus islandicus M.16.4] gi|284444480|gb|ADB85982.1| hypothetical protein LD85_0182 [Sulfolobus islandicus L.D.8.5] gi|323473667|gb|ADX84273.1| ribonuclease HII [Sulfolobus islandicus REY15A] gi|323476318|gb|ADX81556.1| ribonuclease HII [Sulfolobus islandicus HVE10/4] Length = 212 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 23/199 (11%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA-II 81 GIDE GRGAL GP++VA + + + + F G+ DSK+++ ++RE+L++ I S+ Sbjct: 3 IGIDEAGRGALIGPMIVAGVAISDSKLKFLKGIGVKDSKQLTRERREKLFDIIASTVDAF 62 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQV-IPRSALIDGRS-------IPEDLPCQA 133 ++ ID +N++ T DA+ + +L V P +D + L ++ Sbjct: 63 TVVKVFPYEIDNYNLNDLTYDAVSKIILSLSVFNPEIVTVDKVGEEKPVIELIRKLGYKS 122 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK- 191 V K D + + +AASIIAKV RD + K Y D+G GYP + + +K Sbjct: 123 NVVHKADVLFVEASAASIIAKVIRDNYIDELKKVYGDFG----SGYPADPRTIKWLKSFY 178 Query: 192 ----GPSCIHRLTFRPLRN 206 P I R +++ LR+ Sbjct: 179 EKNPNPPPIVRRSWKILRS 197 >gi|88191784|pdb|1X1P|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-197)-A(28-42) Length = 212 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 57/198 (28%), Positives = 95/198 (47%), Gaps = 28/198 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS-AI 80 +AGIDE GRG + GP+V+AA+++D N++P + DSKK++ K+RE+L+ +I Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62 Query: 81 ISISSASHQYI--DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE----------- 127 I I + +++ ++ A+ +L+V P D + E Sbjct: 63 YVILELPPDVIGSREGTLNEFEVENFAKALNSLKVKPDVIYADAADVDEERFARELGERL 122 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + + A K D I ++AASI+AKVTRDR + ++Y + G GYP+ + Sbjct: 123 NFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGYPSDPRTRA 178 Query: 188 I-----KEKG-PSCIHRL 199 +E G I R Sbjct: 179 FLENYYREHGEFPPIVRK 196 >gi|159905682|ref|YP_001549344.1| ribonuclease HII [Methanococcus maripaludis C6] gi|238686969|sp|A9A9T9|RNH2_METM6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|159887175|gb|ABX02112.1| ribonuclease HII [Methanococcus maripaludis C6] Length = 239 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 60/218 (27%), Positives = 98/218 (44%), Gaps = 32/218 (14%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYE 73 + E + + G+DE GRG + GP+V+A++ ++ ++ G+ DSK++S KKREELY Sbjct: 12 LDEFSGKIIVGLDEAGRGPVIGPMVIASVKINEKDLYKLQDLGLKDSKQLSKKKREELYV 71 Query: 74 KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL------QVIPRSALIDGRSIPE 127 KI+ + + + ID+ A L + S ID S E Sbjct: 72 KISEICNVKKIVIAPEKIDEQMEITNLNKIELSAFSKLANHFIKENENISIYIDACSSNE 131 Query: 128 ------------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 + + A K D ++AASIIAKVTRD ++ K + + G Sbjct: 132 QSFSNQFKAKLINKNVEIIAEHKADENYKIVSAASIIAKVTRDNVIEEYKKTFGEIG--- 188 Query: 176 HVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207 GYP+ K ++ +K+ G I R ++ +NL Sbjct: 189 -SGYPSDPKTKKFLKKYVHENKGLPKIARKSWATSKNL 225 >gi|56713262|gb|AAW23358.1| ribonuclease HIIA [Leishmania major] Length = 296 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 73/260 (28%), Positives = 105/260 (40%), Gaps = 77/260 (29%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSA- 79 + V G+DE GRG +AGPV VAA + + P + + DSKK+ R E E + + Sbjct: 15 IRYVIGVDEAGRGCMAGPVGVAATLYRISATPVRYAVMDSKKMKESDRAETLEAMCAELS 74 Query: 80 -----------------------------IISISSASHQYIDKHNIHKATLDAI------ 104 ++ + I++ NI ATL+ + Sbjct: 75 DAGVEGFVGTTVRDGACCLVRYQRRKPLQAVAAALVDVSVINERNILNATLEGMSAVCEA 134 Query: 105 ----YHAVENLQ---VIPRSALIDGRSIPEDL---------------------------- 129 Y+AV L + + LIDG +P Sbjct: 135 VVRSYNAVSGLGTLTPLTCAILIDGNRVPWTFLSGEERQRVCVQAVRKVEARKRIGVEYP 194 Query: 130 ---PCQAFAVIKGDSISLSIAAASIIAKVTRDRL-MRIAHKKYPDYGFDSHVGYPTAKHQ 185 V+KGD+ LSIAAASI+AKV RD + + H +P YGFD H GY TA H+ Sbjct: 195 ALDGFSCTTVVKGDATLLSIAAASIVAKVARDAYAVSVMHPAFPQYGFDHHKGYCTAAHK 254 Query: 186 QVIKEKGPSCIHRLTFRPLR 205 + GPS HRL + P++ Sbjct: 255 AELARWGPSRFHRLDYAPVK 274 >gi|229583211|ref|YP_002841610.1| ribonuclease HII [Sulfolobus islandicus Y.N.15.51] gi|228013927|gb|ACP49688.1| ribonuclease HII [Sulfolobus islandicus Y.N.15.51] Length = 212 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 59/199 (29%), Positives = 99/199 (49%), Gaps = 23/199 (11%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKI-TSSAII 81 GIDE GRGAL GP++VA + + + + F G+ DSK+++ ++RE+L++ I + Sbjct: 3 IGIDEAGRGALIGPMIVAGVAISDSKLKFLKGIGVKDSKQLTRERREKLFDIIAITVDAF 62 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQV-IPRSALIDGRS-------IPEDLPCQA 133 ++ ID +N++ T DA+ + +L V P +D + L ++ Sbjct: 63 TVVKVFPYEIDNYNLNDLTYDAVSKIILSLSVFNPEIVTVDKVGEEKPVIELIRKLGYKS 122 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK- 191 V K D + + +AASIIAKV RD + K Y D+G GYP + + +K Sbjct: 123 NVVHKADVLFVEASAASIIAKVIRDNYIDELKKVYGDFG----SGYPADPRTIKWLKSFY 178 Query: 192 ----GPSCIHRLTFRPLRN 206 P I R +++ LR+ Sbjct: 179 EKNPNPPPIVRRSWKILRS 197 >gi|291533379|emb|CBL06492.1| Ribonuclease HII [Megamonas hypermegale ART12/1] Length = 136 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 52/133 (39%), Positives = 83/133 (62%), Gaps = 2/133 (1%) Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 +AI ++ + + ID+ NI++A ++ +Y A+ L P + LID + E L Sbjct: 1 MENAIAVNRAIIDEKTIDRVNIYQAAMNGMYEAIYGLNPKPDAVLIDAMPL-ESLDIYHQ 59 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 ++IKGD+ S SIAAASI+AKV RDR+M K YP YGF + GY T++H + +++ GP Sbjct: 60 SIIKGDAKSASIAAASIVAKVERDRMMNEFDKIYPQYGFAKNKGYGTSEHLEALRKYGPC 119 Query: 195 CIHRLTFRPLRNL 207 IHR +F P++++ Sbjct: 120 EIHRKSFEPIKSM 132 >gi|327401115|ref|YP_004341954.1| ribonuclease HII [Archaeoglobus veneficus SNP6] gi|327316623|gb|AEA47239.1| ribonuclease HII [Archaeoglobus veneficus SNP6] Length = 212 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 28/208 (13%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS 78 M VAGIDE G+G + GP+VV + + G+ DSK++S K+REEL +I Sbjct: 1 MVRVAGIDEAGKGPVIGPMVVCGVCCSEEELVELEKIGVRDSKRLSPKRREELAREIKKL 60 Query: 79 AIISISSASHQYIDKHN----IHKATLDAIYHAVENLQVIPRSALIDGRS-IPEDL---- 129 + + + + +D+ I++ D + L P +D IPE L Sbjct: 61 SNVYVIKLEPEKLDRLMEKKTINEILTDCYAEIINELN--PDLTFVDSPDVIPERLSEAL 118 Query: 130 ----PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH- 184 + A+ + D + ++AASI+AKV RDR + K+ G D GY + K Sbjct: 119 KKRTGKEVKAMHRADVLKPVVSAASIVAKVERDREIEKIKKEL---GVDFGSGYASDKRT 175 Query: 185 ----QQVIKEKG-PSCIHRLTFRPLRNL 207 ++ KE G R +++ L + Sbjct: 176 IEFLKEYFKEHGRFPPYVRRSWKTLDRI 203 >gi|15899137|ref|NP_343742.1| ribonuclease HII [Sulfolobus solfataricus P2] gi|284173748|ref|ZP_06387717.1| ribonuclease HII [Sulfolobus solfataricus 98/2] gi|74539626|sp|Q97W56|RNH2_SULSO RecName: Full=Ribonuclease HII; Short=RNase HII gi|13815686|gb|AAK42532.1| Ribonuclease HII (rnhB) [Sulfolobus solfataricus P2] gi|261600886|gb|ACX90489.1| ribonuclease HII [Sulfolobus solfataricus 98/2] Length = 212 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 56/199 (28%), Positives = 99/199 (49%), Gaps = 23/199 (11%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA-II 81 GIDE GRGAL GP++VA +++ + F G+ DSK+++ ++RE+L++ + ++ Sbjct: 3 VGIDEAGRGALIGPMIVAGVVISDTKLKFLKGIGVKDSKQLTRERREKLFDIVANTVEAF 62 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQV-IPRSALIDGRS-------IPEDLPCQA 133 ++ ID +N++ T DA+ + +L P +D + L ++ Sbjct: 63 TVVKVFPYEIDNYNLNDLTYDAVSKIILSLSSFNPEIVTVDKVGDEKPVIELINKLGYKS 122 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK- 191 V K D + + +AASIIAKV RD + + Y D+G GYP + + +K Sbjct: 123 NVVHKADVLFVEASAASIIAKVIRDNYIDELKQVYGDFG----SGYPADPRTIKWLKSFY 178 Query: 192 ----GPSCIHRLTFRPLRN 206 P I R +++ LR+ Sbjct: 179 EKNPNPPPIIRRSWKILRS 197 >gi|307353890|ref|YP_003894941.1| ribonuclease HII [Methanoplanus petrolearius DSM 11571] gi|307157123|gb|ADN36503.1| ribonuclease HII [Methanoplanus petrolearius DSM 11571] Length = 212 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 25/203 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDE G+G++ GP+V+ + + G DSK +S ++RE+ YE+I + + Sbjct: 2 ICGIDEAGKGSVLGPMVIGGVAGKDLSEFVKKGFADSKTLSPRRREQFYEEIVAEFKTTT 61 Query: 84 SSASHQYIDKHN--IHKATLDAIYHAVENLQVIPRSALIDGRSIPE-----------DLP 130 S ID+ + + A HA ++P +A +D + E Sbjct: 62 VVLSAAMIDELRSSMTMNEIVARSHARAITDLMPDTAYVDACDVNEVRYAETISGFLKND 121 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-----AKHQ 185 + K D + ++AASI+AKVTRDR++ ++ + G GYP+ A + Sbjct: 122 IAIVSKHKADDLYAVVSAASIVAKVTRDRMIEDLKSQWGNIG----SGYPSDPDTIAFLK 177 Query: 186 QVIKEKG-PSCIHRLTFRPLRNL 207 + I+E+G P I R++++ + N+ Sbjct: 178 RYIEERGEPPSIARMSWKTISNM 200 >gi|330835291|ref|YP_004410019.1| ribonuclease HII [Metallosphaera cuprina Ar-4] gi|329567430|gb|AEB95535.1| ribonuclease HII [Metallosphaera cuprina Ar-4] Length = 208 Score = 141 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 62/198 (31%), Positives = 100/198 (50%), Gaps = 23/198 (11%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 GIDE GRG L GP++VA I+LD G+ DSK+++ K+REEL+ I + I+ Sbjct: 4 GIDEAGRGCLIGPMIVAGIVLDEKGREELKELGVKDSKRLTRKRREELFNAIIERSKGIA 63 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVI-PRSALIDGRS-------IPEDLPCQAF 134 ++ A ID +N++ T + + +L + P+ +D + E L A Sbjct: 64 VAKAEPLEIDSNNLNALTYRKVSEIISSLSWLNPKIVTVDKVGKETEVIELIERLGFVAN 123 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK-- 191 V K D + + ++ASIIAKV RD ++ KY D+G GYP+ K + +K+ Sbjct: 124 VVHKADELFIEASSASIIAKVIRDNIIERLKLKYGDFG----SGYPSDPKTIRWVKDLVS 179 Query: 192 -GPSC--IHRLTFRPLRN 206 G I R +++ L+ Sbjct: 180 KGEEPPNIIRKSWKLLQK 197 >gi|14324349|dbj|BAB59277.1| ribonuclease HII [Thermoplasma volcanium GSS1] Length = 218 Score = 141 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 53/200 (26%), Positives = 91/200 (45%), Gaps = 24/200 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAIISISS 85 GIDE GRG + GP+V++ + + G+ DSK +S K+RE L++KIT + S Sbjct: 13 CGIDEAGRGPVIGPMVISIVCCKEEYLREIGVKDSKMLSRKRREYLFDKITKNCAYSYVV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPR-SALIDGRSIPEDL---------PCQAFA 135 S + ++K ++ + + L ID + E+ + Sbjct: 73 VSPETLNKDMASESLNKIEENYILELLSKAEGIVYIDCFDVIEERAEKYIREKSGKEVVC 132 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT---------AKHQQ 186 K DSI +++AASI++KV RDR + +KY +G GYP+ QQ Sbjct: 133 KHKADSIYPAVSAASIVSKVIRDREIDKIAEKYGFFG----SGYPSDPRTIDFLRKAMQQ 188 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 + + + IH T++ ++ Sbjct: 189 GLDLRSVARIHWETYKKIKE 208 >gi|13540964|ref|NP_110652.1| ribonuclease HII [Thermoplasma volcanium GSS1] Length = 219 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 53/200 (26%), Positives = 91/200 (45%), Gaps = 24/200 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAIISISS 85 GIDE GRG + GP+V++ + + G+ DSK +S K+RE L++KIT + S Sbjct: 14 CGIDEAGRGPVIGPMVISIVCCKEEYLREIGVKDSKMLSRKRREYLFDKITKNCAYSYVV 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPR-SALIDGRSIPEDL---------PCQAFA 135 S + ++K ++ + + L ID + E+ + Sbjct: 74 VSPETLNKDMASESLNKIEENYILELLSKAEGIVYIDCFDVIEERAEKYIREKSGKEVVC 133 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT---------AKHQQ 186 K DSI +++AASI++KV RDR + +KY +G GYP+ QQ Sbjct: 134 KHKADSIYPAVSAASIVSKVIRDREIDKIAEKYGFFG----SGYPSDPRTIDFLRKAMQQ 189 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 + + + IH T++ ++ Sbjct: 190 GLDLRSVARIHWETYKKIKE 209 >gi|34395818|sp|Q97CG6|RNH2_THEVO RecName: Full=Ribonuclease HII; Short=RNase HII Length = 212 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 53/200 (26%), Positives = 91/200 (45%), Gaps = 24/200 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAIISISS 85 GIDE GRG + GP+V++ + + G+ DSK +S K+RE L++KIT + S Sbjct: 7 CGIDEAGRGPVIGPMVISIVCCKEEYLREIGVKDSKMLSRKRREYLFDKITKNCAYSYVV 66 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPR-SALIDGRSIPEDL---------PCQAFA 135 S + ++K ++ + + L ID + E+ + Sbjct: 67 VSPETLNKDMASESLNKIEENYILELLSKAEGIVYIDCFDVIEERAEKYIREKSGKEVVC 126 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT---------AKHQQ 186 K DSI +++AASI++KV RDR + +KY +G GYP+ QQ Sbjct: 127 KHKADSIYPAVSAASIVSKVIRDREIDKIAEKYGFFG----SGYPSDPRTIDFLRKAMQQ 182 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 + + + IH T++ ++ Sbjct: 183 GLDLRSVARIHWETYKKIKE 202 >gi|256824957|ref|YP_003148917.1| ribonuclease HII [Kytococcus sedentarius DSM 20547] gi|256688350|gb|ACV06152.1| ribonuclease HII [Kytococcus sedentarius DSM 20547] Length = 252 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 60/220 (27%), Positives = 86/220 (39%), Gaps = 46/220 (20%) Query: 15 EAMVREKNMWPVAGIDEVGRGALA----------------GPVVVAAIILDPNNIPFGIN 58 E + + VAG+DEVGRGALA PV G+ Sbjct: 24 ERELLRQGARRVAGMDEVGRGALAGPVSVGVVVVDAAVGTAPV--------------GVR 69 Query: 59 DSKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117 DSK +S +RE L +++ + + A + ID H I A A A+ V Sbjct: 70 DSKDLSAARREGLVPQLSRWGVARGVGHAGPEEIDAHGIMAALRMAGRRALAAAGVEVDV 129 Query: 118 ALIDGRSIPEDLPCQ-------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIA 164 L+DG P + K D S+AAAS++AKV RD +M Sbjct: 130 VLLDGNHDWLTDPLRSGLFGLQGVAGPAVVTRTKADRTCSSVAAASVLAKVERDGIMTDL 189 Query: 165 HKK--YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 YG++ + GY H+ + GPS HR ++R Sbjct: 190 AGAPGCAAYGWERNKGYAAGDHRAALGSLGPSVHHRRSWR 229 >gi|254167831|ref|ZP_04874680.1| ribonuclease HII [Aciduliprofundum boonei T469] gi|289596631|ref|YP_003483327.1| ribonuclease HII [Aciduliprofundum boonei T469] gi|197623122|gb|EDY35688.1| ribonuclease HII [Aciduliprofundum boonei T469] gi|289534418|gb|ADD08765.1| ribonuclease HII [Aciduliprofundum boonei T469] Length = 212 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 29/199 (14%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSSA-IISIS 84 G+DE GRG + GP+VVA + + + I + DSKK+S K+RE L E+I A I + Sbjct: 3 CGVDEAGRGPVIGPLVVAGVCGEESKIASLRVKDSKKLSPKRRERLAEEIKKVASKIVVI 62 Query: 85 SASHQYID----KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL----------- 129 + ID K +++ ++ + L +D + ED Sbjct: 63 KIEPEEIDALREKMTLNEIEVELFARVISQLNG--DKVYVDAADVNEDRFAEEIKKKLGK 120 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ---- 185 + + K DS ++AASIIAKV RDR++ K+ ++G GYP + Sbjct: 121 DVEIISEHKADSKYPMVSAASIIAKVERDRIINELKKELGEFG----SGYPADERTKRFL 176 Query: 186 -QVIKEKGPSCIH-RLTFR 202 + +KE H R +++ Sbjct: 177 EKYVKEHNELPPHTRHSWK 195 >gi|45358937|ref|NP_988494.1| ribonuclease HII [Methanococcus maripaludis S2] gi|73917612|sp|Q6LXH7|RNH2_METMP RecName: Full=Ribonuclease HII; Short=RNase HII gi|45047803|emb|CAF30930.1| Ribonuclease HII [Methanococcus maripaludis S2] Length = 242 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 59/211 (27%), Positives = 89/211 (42%), Gaps = 32/211 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI 80 + G+DE GRG + GP+V+A++ +D N+ + DSK++S KKREELY I Sbjct: 22 IIVGLDEAGRGPVLGPMVIASVKIDEKNLYKLNDLELKDSKQLSKKKREELYIIINEMCD 81 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR------SALIDGRSIPE------- 127 + + IDK A L S ID S E Sbjct: 82 VEKIVIDPETIDKQMEIINLNKIELSAFSKLSNHFIRENDNISIYIDACSSSEQSFSNQF 141 Query: 128 -----DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT- 181 + + A K D ++AASIIAKVTRDR++ + + + G GYP+ Sbjct: 142 KAKLINKNVEIIAEHKADENYKIVSAASIIAKVTRDRVIEEYKETFGEIG----SGYPSD 197 Query: 182 AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207 K ++ +K I R ++ +NL Sbjct: 198 PKTKKFLKNYVYENRTLPKIARKSWATSKNL 228 >gi|15920736|ref|NP_376405.1| ribonuclease HII [Sulfolobus tokodaii str. 7] gi|74574695|sp|Q974Z3|RNH2_SULTO RecName: Full=Ribonuclease HII; Short=RNase HII gi|15621519|dbj|BAB65514.1| 208aa long hypothetical ribonuclease HII [Sulfolobus tokodaii str. 7] Length = 208 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 23/204 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA 79 V GIDE GRG+L GP++VA + + + + F G+ DSK+++ +RE+L++ I S + Sbjct: 1 MIVVGIDEAGRGSLIGPMIVAGVAIKNDRLKFLKNIGVKDSKQLTRNRREKLFDIICSYS 60 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENL-QVIPRSALIDGRSIPEDLPCQAFA-- 135 +I S + ID N+++ T A+ + +L + P ID + + + Sbjct: 61 EGFTIVKVSPEEIDSENLNELTYKAMIKIIYSLVEFKPIRISIDKVGNTKVVEQEIIKLG 120 Query: 136 -----VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIK 189 V D + +AASIIAKV RD ++ KY D+G GYP+ K +K Sbjct: 121 MEPNIVTNADVYFVEASAASIIAKVIRDNIIDTLKSKYGDFG----SGYPSDPKTVNWVK 176 Query: 190 E-----KGPSCIHRLTFRPLRNLS 208 P I R +++ L+ ++ Sbjct: 177 NVYKEYLTPPPIIRRSWKILQEIA 200 >gi|254167925|ref|ZP_04874774.1| ribonuclease HII [Aciduliprofundum boonei T469] gi|197623216|gb|EDY35782.1| ribonuclease HII [Aciduliprofundum boonei T469] Length = 212 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 29/199 (14%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSSA-IISIS 84 G+DE GRG + GP+VVA + + + I + DSKK+S K RE L E+I A I + Sbjct: 3 CGVDEAGRGPVIGPLVVAGVCGEESKIASLRVKDSKKLSPKSRERLAEEIKKVASKIVVI 62 Query: 85 SASHQYID----KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL----------- 129 + ID + +++ ++ + L +D + ED Sbjct: 63 KIEPEEIDALRERMTLNEIEVELFARVISQLNG--DKVYVDAADVNEDRFAEEIKKKLGK 120 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ---- 185 + + K DS ++AASIIAKV RDR++ ++ ++G GYP+ Sbjct: 121 DVEIISEHKADSKYPMVSAASIIAKVERDRIIEELKEELGEFG----SGYPSDDRTKRFL 176 Query: 186 -QVIKEKGPSCIH-RLTFR 202 + +KE H R +++ Sbjct: 177 EKYVKEHNELPPHTRHSWK 195 >gi|126178454|ref|YP_001046419.1| ribonuclease HII [Methanoculleus marisnigri JR1] gi|125861248|gb|ABN56437.1| RNase HII [Methanoculleus marisnigri JR1] Length = 205 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 58/200 (29%), Positives = 91/200 (45%), Gaps = 25/200 (12%) Query: 29 IDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 +DE G+G++ GP+VVAA+ + I DSK + K+RE LYE + I+I + Sbjct: 1 MDEAGKGSVLGPMVVAAVGCREIEDLATLPIRDSKVLRPKQREALYEILFRDFSIAIVTI 60 Query: 87 SHQYID--KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-----------EDLPCQA 133 ID + + T A HA + + P A +D + D PC+ Sbjct: 61 DAAGIDDARSRMSMNTCVAELHAEALMSLQPEYAYVDACDVNAERYGRTVAELLDYPCEI 120 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQ----VI 188 A D+ + AAS++AKVTRDR +R ++Y G GYP+ + I Sbjct: 121 VAEHHADARHKVVGAASVVAKVTRDRAIRELEQQYGAIG----SGYPSDPATIEFLRGYI 176 Query: 189 KEKG-PSCIHRLTFRPLRNL 207 + G P R +++ + NL Sbjct: 177 RSHGSPPACARRSWKTVTNL 196 >gi|227497524|ref|ZP_03927752.1| possible ribonuclease H [Actinomyces urogenitalis DSM 15434] gi|226833027|gb|EEH65410.1| possible ribonuclease H [Actinomyces urogenitalis DSM 15434] Length = 253 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 95/232 (40%), Gaps = 42/232 (18%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISH 65 RP ELE + VAG+DEVGRGALAGPV V ++D P++ P G+ DSK++S Sbjct: 12 RPDRELETTLLAS-HRVVAGMDEVGRGALAGPVSVGVALVDTTTPDHFPHGLADSKQLSP 70 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHA---VENLQVIPRSALID 121 +RE L + +++ A ID + A A A V + P ++D Sbjct: 71 TRREALQAPCRDWVLDCAVAHAWPAEIDALGMVGALRLAGLRALVEVASRGHRPDVVILD 130 Query: 122 GRSIPEDLP--------------CQAFAVIKGDSISLSIAAASIIAKV------------ 155 G + P A A ++ SL +A + +V Sbjct: 131 GVADWLSEPATDLLTELSASQPVHPAVAEVRHQMDSLGLATPPVRMQVKADARCAVVAAA 190 Query: 156 ------TRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 RD LM P YG+ S+ GY +A H + G S HR ++ Sbjct: 191 SVLAKVERDALMTELDD--PGYGWASNKGYASAAHVAGLGRLGASDQHRRSW 240 >gi|321159924|pdb|3P83|D Chain D, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus Fulgidus. gi|321159925|pdb|3P83|E Chain E, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus Fulgidus. gi|321159926|pdb|3P83|F Chain F, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus Fulgidus Length = 217 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 98/200 (49%), Gaps = 24/200 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAIISIS 84 AGIDE G+G + GP+VVA + + G+ DSKK+S +REEL E+I + Sbjct: 15 AGIDEAGKGCVIGPLVVAGVACSDEDRLRKLGVKDSKKLSQGRREELAEEIRKICRTEVL 74 Query: 85 SASHQYIDKHNIHKATLDAIYHAVEN--LQVIPRSALIDGRS-IPEDL--------PCQA 133 S + +D+ K + + L++ P A +D IPE L + Sbjct: 75 KVSPENLDERMAAKTINEILKECYAEIILRLKPEIAYVDSPDVIPERLSRELEEITGLRV 134 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK- 191 A K D +AAASIIAKV R+R + +K+ D+G GY + + ++V+KE Sbjct: 135 VAEHKADEKYPLVAAASIIAKVEREREIERLKEKFGDFG----SGYASDPRTREVLKEWI 190 Query: 192 ----GPSCIHRLTFRPLRNL 207 PSC+ R+ ++ + NL Sbjct: 191 ASGRIPSCV-RMRWKTVSNL 209 >gi|124486303|ref|YP_001030919.1| ribonuclease HII [Methanocorpusculum labreanum Z] gi|189043623|sp|A2STJ6|RNH2_METLZ RecName: Full=Ribonuclease HII; Short=RNase HII gi|124363844|gb|ABN07652.1| RNase HII [Methanocorpusculum labreanum Z] Length = 212 Score = 137 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 51/203 (25%), Positives = 89/203 (43%), Gaps = 23/203 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAII 81 + G+DE G+G + GP++ A +++ + GI DSKK+S KKRE L+E+IT S Sbjct: 1 MTICGVDEAGKGPVLGPMITAGVLVSDMSELEMLGIKDSKKLSPKKRESLFEEITFSWKT 60 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF------- 134 + ID A HA + +D + + Sbjct: 61 YTVVRTPFDIDSREGTMNAFTASCHADVVRALCADFVYLDACDVNAKRFGENVLRLSGSS 120 Query: 135 ----AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK-----HQ 185 + K D+ + AASI+AKVTRDR + ++Y + G GYP+ Sbjct: 121 AHVCSEHKADAKYAVVGAASIVAKVTRDRCIADLKEEYGEIG----SGYPSDPATISFLT 176 Query: 186 QVIKEKGPSCI-HRLTFRPLRNL 207 + I+ +G + R +++ ++++ Sbjct: 177 EYIRTRGEVPLCARRSWQTVQDI 199 >gi|14278646|pdb|1I39|A Chain A, Rnase Hii From Archaeoglobus Fulgidus gi|14278647|pdb|1I3A|A Chain A, Rnase Hii From Archaeoglobus Fulgidus With Cobalt Hexammine Chloride Length = 225 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 98/200 (49%), Gaps = 24/200 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAIISIS 84 AGIDE G+G + GP+VVA + + G+ DSKK+S +REEL E+I + Sbjct: 23 AGIDEAGKGCVIGPLVVAGVACSDEDRLRKLGVKDSKKLSQGRREELAEEIRKICRTEVL 82 Query: 85 SASHQYIDKHNIHKATLDAIYHAVEN--LQVIPRSALIDGRS-IPEDL--------PCQA 133 S + +D+ K + + L++ P A +D IPE L + Sbjct: 83 KVSPENLDERMAAKTINEILKECYAEIILRLKPEIAYVDSPDVIPERLSRELEEITGLRV 142 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK- 191 A K D +AAASIIAKV R+R + +K+ D+G GY + + ++V+KE Sbjct: 143 VAEHKADEKYPLVAAASIIAKVEREREIERLKEKFGDFG----SGYASDPRTREVLKEWI 198 Query: 192 ----GPSCIHRLTFRPLRNL 207 PSC+ R+ ++ + NL Sbjct: 199 ASGRIPSCV-RMRWKTVSNL 217 >gi|11498229|ref|NP_069455.1| ribonuclease HII (rnhB) [Archaeoglobus fulgidus DSM 4304] gi|7388077|sp|O29634|RNH2_ARCFU RecName: Full=Ribonuclease HII; Short=RNase HII gi|2650000|gb|AAB90620.1| ribonuclease HII (rnhB) [Archaeoglobus fulgidus DSM 4304] Length = 205 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 98/200 (49%), Gaps = 24/200 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAIISIS 84 AGIDE G+G + GP+VVA + + G+ DSKK+S +REEL E+I + Sbjct: 3 AGIDEAGKGCVIGPLVVAGVACSDEDRLRKLGVKDSKKLSQGRREELAEEIRKICRTEVL 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVEN--LQVIPRSALIDGRS-IPEDL--------PCQA 133 S + +D+ K + + L++ P A +D IPE L + Sbjct: 63 KVSPENLDERMAAKTINEILKECYAEIILRLKPEIAYVDSPDVIPERLSRELEEITGLRV 122 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK- 191 A K D +AAASIIAKV R+R + +K+ D+G GY + + ++V+KE Sbjct: 123 VAEHKADEKYPLVAAASIIAKVEREREIERLKEKFGDFG----SGYASDPRTREVLKEWI 178 Query: 192 ----GPSCIHRLTFRPLRNL 207 PSC+ R+ ++ + NL Sbjct: 179 ASGRIPSCV-RMRWKTVSNL 197 >gi|257456662|ref|ZP_05621855.1| ribonuclease HII [Treponema vincentii ATCC 35580] gi|257445929|gb|EEV20979.1| ribonuclease HII [Treponema vincentii ATCC 35580] Length = 165 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 55/158 (34%), Positives = 75/158 (47%), Gaps = 16/158 (10%) Query: 60 SKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR-- 116 KK+S K+RE I A+ I+S IDK NI +ATL A+ A + L R Sbjct: 3 QKKLSPKRRETARAAILEGALYWHIASMPPDLIDKINILQATLAAMKEAFDRLFARYRRD 62 Query: 117 ------------SALIDGRSIPEDL-PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163 + ++DG +P+ A K D + AASI+AK RDR M Sbjct: 63 SIGKTADIEKSLTVIVDGNQLPDIHGDFNLTAEPKADGRYPCVMAASILAKTERDRCMME 122 Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 HK+YP Y +D H GY T H+ +I+ G S I R +F Sbjct: 123 YHKQYPLYRYDLHKGYGTKLHRSLIEVYGASPIQRHSF 160 >gi|73670221|ref|YP_306236.1| ribonuclease HII [Methanosarcina barkeri str. Fusaro] gi|97182902|sp|Q468N6|RNH2_METBF RecName: Full=Ribonuclease HII; Short=RNase HII gi|72397383|gb|AAZ71656.1| RNase HII [Methanosarcina barkeri str. Fusaro] Length = 224 Score = 135 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 51/216 (23%), Positives = 94/216 (43%), Gaps = 39/216 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI- 80 +AGIDE G+G + GP+ + + ++ + G+ DSKK++ KKRE+L +I A Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKIEESRAHILKVLGVADSKKLTPKKREQLAAQIKKHADG 62 Query: 81 ISISSASHQYIDKHN----IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP------ 130 + S ID+ +++ + +E L+ P D + + Sbjct: 63 FFVLEVSPSQIDELRKIMTMNEIMVVCFSKVLEQLK--PDLLYADAADVNAERFATNIRK 120 Query: 131 ------------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + ++ + D+ ++AASIIAKV RD L+ K ++G D G Sbjct: 121 QYSKTNPDHAKEIEIISMHQADATYPVVSAASIIAKVRRDELIEELKK---EWGLDFGSG 177 Query: 179 YPT-AKHQQVIKEKG------PSCIHRLTFRPLRNL 207 YP+ K ++ + G I R +++ + N+ Sbjct: 178 YPSDPKTKEFLLNWGKEHSGEFPEIVRQSWQTVENI 213 >gi|240147025|ref|ZP_04745626.1| ribonuclease HII [Roseburia intestinalis L1-82] gi|257200803|gb|EEU99087.1| ribonuclease HII [Roseburia intestinalis L1-82] Length = 116 Score = 135 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 51/116 (43%), Positives = 69/116 (59%), Gaps = 2/116 (1%) Query: 33 GRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYI 91 GRG LAGPVV A+IL + INDSKK++ KREELY++I A+ I S Q I Sbjct: 2 GRGPLAGPVVAGAVILPKDCDILYINDSKKLTAVKREELYDEIMEKAVAAGIGMVSPQRI 61 Query: 92 DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 D+ NI +AT +A+ A+ L+ P L D +IPE + +IKGD+ S+SI Sbjct: 62 DEINILQATYEAMREAISKLEPAPDILLNDAVTIPE-VTIPQVPIIKGDAKSISIG 116 >gi|298674468|ref|YP_003726218.1| ribonuclease HII [Methanohalobium evestigatum Z-7303] gi|298287456|gb|ADI73422.1| ribonuclease HII [Methanohalobium evestigatum Z-7303] Length = 218 Score = 135 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 38/215 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI- 80 VAGIDE G+G + G + +A +++D I G+ DSKKIS +KREEL KI Sbjct: 3 VAGIDEAGKGPVIGSMCIAGVVVDEAKINSLKNLGVTDSKKISPRKREELAHKIKKYVDN 62 Query: 81 ISISSASHQYIDKHN----IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL------- 129 I + ID+ ++ + VENL P +D + + Sbjct: 63 YFIFEITPSQIDELRNVMSMNDIMVLGFSRVVENLN--PELVYVDSADVKPERFAEKIRS 120 Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + + + D + ++AASIIAKV RD L+ +++ G D G Sbjct: 121 EYSKSNKTASENIKIISEHEADVVYSVVSAASIIAKVRRDELVNNLKEEF---GVDFGSG 177 Query: 179 YPTAKH-----QQVIKEKGPSC-IHRLTFRPLRNL 207 YP+ +K G I R +++ + L Sbjct: 178 YPSDPKTKQFLLDWVKRYGSLPDIVRHSWKTAQKL 212 >gi|257076035|ref|ZP_05570396.1| ribonuclease HII [Ferroplasma acidarmanus fer1] Length = 205 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 58/203 (28%), Positives = 88/203 (43%), Gaps = 30/203 (14%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI---PFGINDSKKISHKKREELYEKITSSAIISI 83 GIDE GRG L GP+V+A IL + G+ DSKK+S +RE L+ ++ S + Sbjct: 4 CGIDEAGRGPLIGPMVMA--ILCGDRESLEIIGVADSKKLSPGRRESLFARLQSY-KYNF 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIP---RSALIDGRSIPE---------DLPC 131 S ID++ H+ L + +D + E + Sbjct: 61 VIISPSEIDRYVEHQKLNVLEETYASKLASWAPASSTVYVDSFDVNELRLQSLLMENTKR 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH-----QQ 186 Q K D I ++AASIIAKV RDR + HK Y D+G GYP+ + Sbjct: 121 QIVCRHKADEIYPCVSAASIIAKVIRDREIDKLHKDYGDFG----SGYPSDPRTINFVKN 176 Query: 187 VIKEKGPS--CIHRLTFRPLRNL 207 +K G + I R ++ +++ Sbjct: 177 ALKN-GINIDSIVRHQWKTYKSM 198 >gi|254445906|ref|ZP_05059382.1| ribonuclease HII [Verrucomicrobiae bacterium DG1235] gi|198260214|gb|EDY84522.1| ribonuclease HII [Verrucomicrobiae bacterium DG1235] Length = 250 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 77/239 (32%), Positives = 98/239 (41%), Gaps = 69/239 (28%) Query: 21 KNMWPVAGIDEVGRG----------------------ALAGPVVVAAIILDPNNIPFGIN 58 KN + GIDE GRG IN Sbjct: 15 KNRIGLIGIDEAGRGALAGPVVAAAVAAKEGFYDSEWC--------------KRNASSIN 60 Query: 59 DSKKISHKKREELYEKITS-----SAIISISSASHQYIDKHNIHKATLDAIYHAVENL-- 111 DSK +S +REELY K+ +I + S I+ NI AT A+ AVE + Sbjct: 61 DSKLLSLAQREELYAKLRWLEREGRILIGVGKGSISEIEDLNILGATQAAMKRAVEEILE 120 Query: 112 --QVIPRS---------------------ALIDGRSIPEDLPCQAFAVIKGDSISLSIAA 148 + P L+DG+ + + L + AV+KGDS SL IA Sbjct: 121 QGDISPHDPDPLFDAALGGEPRETLSQWRLLVDGKPM-KHLGFKHEAVVKGDSKSLCIAM 179 Query: 149 ASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 ASIIAKVTRDR+M +YP Y S GY T H+ I + GP+ IHR F LR L Sbjct: 180 ASIIAKVTRDRIMMALDCEYPHYDLASSKGYATVLHRTAILDNGPTKIHRPLF--LRKL 236 >gi|16082425|ref|NP_394911.1| ribonuclease HII [Thermoplasma acidophilum DSM 1728] gi|11387092|sp|P57673|RNH2_THEAC RecName: Full=Ribonuclease HII; Short=RNase HII gi|10640800|emb|CAC12578.1| probable ribonuclease HII [Thermoplasma acidophilum] Length = 212 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 50/198 (25%), Positives = 91/198 (45%), Gaps = 21/198 (10%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISISS 85 GIDE GRG + GP+V++ + D + + + DSK ++ K+R EL+EKI + Sbjct: 8 CGIDEAGRGPVIGPMVISLVCCDLSFLKEIRVKDSKALTRKRRSELFEKIMGRCSVRYRI 67 Query: 86 ASHQYIDKHNIHKATLDAIY-HAVENLQVIPRSALIDGRSIPEDLPC---------QAFA 135 + +++ ++ V+ L+ ID + E+ Q Sbjct: 68 LHPKDLNRMMAAESLNKIEEDEIVDLLRYADDLVYIDCYDVIEERAQEIIQMRSGRQVVC 127 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEKG-- 192 K D+I +++AASI++KV RD + H ++ D+G GYP+ + +K+ Sbjct: 128 KHKADAIFPAVSAASIVSKVIRDAEIDRLHDRFGDFG----SGYPSDPRTIDFLKKYLKE 183 Query: 193 ---PSCIHRLTFRPLRNL 207 PS I R+ + ++ L Sbjct: 184 NQDPSEIVRIHWSTVQRL 201 >gi|239944789|ref|ZP_04696726.1| ribonuclease HII [Streptomyces roseosporus NRRL 15998] gi|239991253|ref|ZP_04711917.1| ribonuclease HII [Streptomyces roseosporus NRRL 11379] Length = 197 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 89/168 (52%), Gaps = 4/168 (2%) Query: 44 AAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLD 102 A I P G+ DSK ++ ++R EL + S ++ AS Q ID + A Sbjct: 2 CAAITGLRRPPEGLTDSKLLTPRRRAELEPVLRSWVTACALGDASPQEIDDLGMTAALRL 61 Query: 103 AIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162 A A+E L V P + ++DG+ P + VIKGD +++AAAS+IAKV RDR+M Sbjct: 62 AAVRALEGLPVRPDAVILDGKHDYLGAPWKVRTVIKGDQSCIAVAAASVIAKVHRDRMMA 121 Query: 163 IAH---KKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 + + FD++ GYP+ H+ ++E+GP+ HRL++ L L Sbjct: 122 ELGAASEDCGGFAFDANAGYPSPVHRAALEERGPTVHHRLSWSYLDAL 169 >gi|41614859|ref|NP_963357.1| hypothetical protein NEQ063 [Nanoarchaeum equitans Kin4-M] gi|74579762|sp|Q74MH3|RNH2_NANEQ RecName: Full=Ribonuclease HII; Short=RNase HII gi|40068583|gb|AAR38918.1| NEQ063 [Nanoarchaeum equitans Kin4-M] Length = 200 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 90/187 (48%), Gaps = 16/187 (8%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAIISISSA 86 G+DE GRG + GP+V+A +I D + G+ DSK ++ ++REEL+ +I ++++ Sbjct: 5 GVDEAGRGPIIGPMVIALVIGDSGYLKELGVKDSKLLTKEQREELFNEIVKNSLVKYEIV 64 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI---- 142 S ID++N+++ + + +++ +ID PE+ + +K Sbjct: 65 SPSLIDRYNLNELEAKVTANLINSIEDEISHIVIDSPERPENYKLRILKYLKKRVKIITK 124 Query: 143 -----SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK--GPS 194 +AAASI+AKV RDR + + G D GYP+ + ++ +++ Sbjct: 125 NKGEEDPLVAAASIVAKVIRDREIEKIKE---QTGIDFGSGYPSDKRTRKALEQYYRILK 181 Query: 195 CIHRLTF 201 R + Sbjct: 182 PYIRKKW 188 >gi|325960150|ref|YP_004291616.1| ribonuclease Hii [Methanobacterium sp. AL-21] gi|325331582|gb|ADZ10644.1| ribonuclease HII [Methanobacterium sp. AL-21] Length = 204 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 29/207 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG++ GP+VV + ++ + + DSKK++ K+R LY KI A Sbjct: 3 IVGIDEAGRGSVLGPLVVCGVSIEEERLKYLERLKLKDSKKVTPKRRIVLYRKIKKIADC 62 Query: 82 SISSASHQYIDKHNIHKATLDAIYH-AVENL--QVIPRSALIDGRSIPEDL--------- 129 S ID L+ I A++ + P + ID + + Sbjct: 63 HPVHISAADIDLLRSKDVNLNEIEKIAIKQIIGNCDPDISYIDCIDVKPERFTNEIENFQ 122 Query: 130 -PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + A D ++AASI+AKV RD+ + K++ + G GYP+ Sbjct: 123 ENLKVVAEHGADDTYPIVSAASIVAKVERDQEISRLKKEFGEIG----SGYPSDPKTVAY 178 Query: 189 KEKGPSCI------HRLTFRPLRNLSV 209 + + R ++ + + + Sbjct: 179 LK--ATPYKELPIFVRRSWSTVEKMRL 203 >gi|119719808|ref|YP_920303.1| ribonuclease HII [Thermofilum pendens Hrk 5] gi|189043673|sp|A1RYM0|RNH2_THEPD RecName: Full=Ribonuclease HII; Short=RNase HII gi|119524928|gb|ABL78300.1| RNase HII [Thermofilum pendens Hrk 5] Length = 213 Score = 134 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 56/216 (25%), Positives = 88/216 (40%), Gaps = 35/216 (16%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS 78 M VAGIDE GRG + GP+VVA ++ +P G+ DSK +S ++R L I S Sbjct: 1 MGRVAGIDEAGRGPMLGPMVVAIVVCPEEKVPLLRNMGVRDSKALSPRRRLLLSRAIPSV 60 Query: 79 -AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR----------SIPE 127 + + Q ID + + + + L +G +P Sbjct: 61 GCSVKVRVVEPQEIDCAVRGECYENLNHLEAAVFAQLINEVLSEGELEVVYMDSPDPVPS 120 Query: 128 DLPCQAFAVIKG----------DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + A++KG D + AASI+AK TRD ++ K Y D+G Sbjct: 121 RFEERVRALLKGQVRIVAENGADEKYTIVGAASIVAKETRDEIINALKKTYGDFG----S 176 Query: 178 GYPTAKHQ-----QVIKEKG-PSCIHRLTFRPLRNL 207 GYP+ + +++ G P I R + + L Sbjct: 177 GYPSDPRTLRFAEEWVRKHGEPPPIARKEWATWKRL 212 >gi|312137140|ref|YP_004004477.1| rnase hii [Methanothermus fervidus DSM 2088] gi|311224859|gb|ADP77715.1| RNase HII [Methanothermus fervidus DSM 2088] Length = 200 Score = 134 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 52/201 (25%), Positives = 83/201 (41%), Gaps = 20/201 (9%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG + GP++V +++D N + DSK +S ++R+ L ++I + Sbjct: 1 MSILGIDEAGRGPVLGPLIVCGVLVDDENKLKKLNVRDSKLLSPRRRKILAKEIKKVSKC 60 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVI---PRSALIDGRSIPEDL--------P 130 I IDK I +L+ I + + P+ ++D I Sbjct: 61 FIVKIQAYEIDKLRIAGISLNEIERIAMSKIIKNANPKKVIVDSIDIKPKRLKKKLQKEN 120 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----TAKHQQ 186 + K D ++AASI+AKV RD + K+ Y D GYP T K + Sbjct: 121 IEVIVEHKADEKYPVVSAASIVAKVERDSEIEKLKKR---YNCDLGSGYPNDPKTIKFLK 177 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 K R T+ + L Sbjct: 178 KFKRSELPDFVRKTWNTVEKL 198 >gi|21228916|ref|NP_634838.1| ribonuclease HII [Methanosarcina mazei Go1] gi|34395785|sp|Q8PTA3|RNH2_METMA RecName: Full=Ribonuclease HII; Short=RNase HII gi|20907449|gb|AAM32510.1| Ribonuclease [Methanosarcina mazei Go1] Length = 220 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 35/214 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI- 80 +AGIDE G+G + GP+ + + +D + G+ DSKK++ KKRE+L +I A Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKIDESKAHILKVLGVADSKKLTPKKREQLASQIKKHADG 62 Query: 81 ISISSASHQYIDKHN----IHKATLDAIYHAVENLQ---VIPRSALIDGRSIPEDL---- 129 I S ID+ +++ + +E L+ V +A + E+L Sbjct: 63 YFIFEVSPSQIDELRKIMSMNEIMVVCFAKVLEQLKPDIVYADAADVKAERFAENLLRQY 122 Query: 130 ---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + ++ + D+I ++AASIIAKV RD L+ + ++ D GYP Sbjct: 123 AKTSPDHAKKIKVVSMHQADAIYPVVSAASIIAKVRRDELIEELKR---EWCIDFGSGYP 179 Query: 181 TAKH-----QQVIKEKG--PSCIHRLTFRPLRNL 207 + + KE G I R +++ + N+ Sbjct: 180 SDPKTRGFLLKWGKEHGGDFPDIVRQSWQTVENI 213 >gi|305663629|ref|YP_003859917.1| ribonuclease HII [Ignisphaera aggregans DSM 17230] gi|304378198|gb|ADM28037.1| ribonuclease HII [Ignisphaera aggregans DSM 17230] Length = 232 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 93/206 (45%), Gaps = 31/206 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-I 80 + GIDE GRG L G + +A I+++ + + G+ DSK++S +KR + + I ++ + Sbjct: 5 ICGIDEAGRGPLIGDMFIAMIVINTDALKYLENIGVRDSKRLSREKRIKFFPIIIENSEL 64 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPEDL-------- 129 + IS + +D+ NI+K L+ + ++ ++ ID + P L Sbjct: 65 VLISRLTPSQLDEENINKLELNTVCRLIKKSISIVSTISEIYIDAFANPNKLLHYINSNC 124 Query: 130 -----PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AK 183 + D+ + + AASI+AKV RD + K Y D+G GYP+ K Sbjct: 125 IASNRSINVYIEHGADNKYVVVGAASIVAKVLRDTHIDNLKKVYGDFG----SGYPSDKK 180 Query: 184 HQQVIKEK-----GPSCIHRLTFRPL 204 + ++ I R ++ + Sbjct: 181 TIEWLRNYYAKHNALPPIVRKSWSTI 206 >gi|320096209|ref|ZP_08027796.1| ribonuclease HII [Actinomyces sp. oral taxon 178 str. F0338] gi|319976857|gb|EFW08613.1| ribonuclease HII [Actinomyces sp. oral taxon 178 str. F0338] Length = 225 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 71/212 (33%), Positives = 105/212 (49%), Gaps = 26/212 (12%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREEL 71 E + ++ VAG+DEVGRG+LAGPV V + P + P G+ DSK ++ K+RE L Sbjct: 10 FEQSLADQ-FGVVAGVDEVGRGSLAGPVAVGVALTSPGAADPPAGLVDSKALTAKRREAL 68 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRS--- 124 + A+ ++ A ID+ I A A A++ L +P + ++DG Sbjct: 69 APAVRQWALDCAVGWAGPDEIDQWGIVAALRLAGLRALDELAGRGRVPGAVVLDGSHNWL 128 Query: 125 -IPEDL-------------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 +PEDL P A +K D+ +AAAS+IAKV RDRLM P Sbjct: 129 AMPEDLLGGLGGPDYPPPCPAPIRARVKADASCAVVAAASVIAKVERDRLMAELDD--PG 186 Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 Y + + GY +A H + E GPS HR +++ Sbjct: 187 YEWSRNKGYASAAHIAALAELGPSAHHRRSWK 218 >gi|307595739|ref|YP_003902056.1| ribonuclease HII [Vulcanisaeta distributa DSM 14429] gi|307550940|gb|ADN51005.1| ribonuclease HII [Vulcanisaeta distributa DSM 14429] Length = 218 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 91/212 (42%), Gaps = 36/212 (16%) Query: 25 PVAGIDEVGRGALAGPVVVA-AIILDPNNIP-FGINDSKKISHKKREELYEKITSSA-II 81 V GIDE GRG + GP+V+A A+ D N + GI DSK++S R L+ + S+ I Sbjct: 4 LVGGIDEAGRGPVIGPMVMAIAVTNDMNRLKAMGIRDSKELSPAGRARLFSILKSTLNYI 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENL------QVIPRSALIDGRSIPEDLPCQAFA 135 + ID + A L V P+ ID P+ P + Sbjct: 64 DYEIVEPRVIDNYVYMNALNILEVEIAIKLINRALNSVSPQVVYIDS---PDPRPERYRD 120 Query: 136 VIK--------------GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 ++K D + ++AASI+AKV RD ++ H++Y D+G GYP+ Sbjct: 121 MVKRGVVGNVEVVAMNNADKLIPVVSAASIVAKVIRDSIIEELHREYGDFG----SGYPS 176 Query: 182 AKH-----QQVIKEKG-PSCIHRLTFRPLRNL 207 + +K G I R ++ +R L Sbjct: 177 DPRTMAFLRDWVKRHGDLPPIVRRSWSTVRKL 208 >gi|325067038|ref|ZP_08125711.1| putative ribonuclease H [Actinomyces oris K20] Length = 244 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 103/226 (45%), Gaps = 36/226 (15%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISH 65 RP LE + E V G+DEVGRGALAGPV V I+ ++ P G+ DSK+++ Sbjct: 8 RPDRSLEKALLET-YDYVGGLDEVGRGALAGPVSVGLAIVARRTDDDFPEGLADSKQLTA 66 Query: 66 KKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHA---VENLQVIPRSALID 121 + R L E + +++ AS ID+H I A A A V + PR ++D Sbjct: 67 RARTGLVEPVRGWLVDHAVAHASPAEIDEHGIVAALRMAGLRALQQVADRGHAPRIIILD 126 Query: 122 GR------------------SIPEDLPCQAFAV--------IKGDSISLSIAAASIIAKV 155 G + E P A + +K D+ +AAAS++AKV Sbjct: 127 GVADWLTAAQPDLLTALEGAHVSETAPAPAEVLSTPPVHMEVKADARCAVVAAASVLAKV 186 Query: 156 TRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 RDRLM P YG+ S+ GY + H + + G S HR ++ Sbjct: 187 ERDRLMADLDD--PGYGWASNKGYASPAHVRGLTVLGASDQHRRSW 230 >gi|119872804|ref|YP_930811.1| ribonuclease HII [Pyrobaculum islandicum DSM 4184] gi|189043646|sp|A1RU36|RNH2_PYRIL RecName: Full=Ribonuclease HII; Short=RNase HII gi|119674212|gb|ABL88468.1| RNase HII [Pyrobaculum islandicum DSM 4184] Length = 195 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 22/199 (11%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSSA----- 79 + GIDE GRG + GP+V+AA+ D + G+ DSK +S KRE +Y +I A Sbjct: 2 ICGIDEAGRGPVVGPMVIAAVAGDGERLLQLGVRDSKTLSPTKREVIYARIIEVADCVNY 61 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ +Y+ + ++ LD +E +D + A + I G Sbjct: 62 VVVEPHIIDEYVRRRMLNSLELDFTARLIEL--CPAELYYVDSPDVNSRRYGDALSFITG 119 Query: 140 DSI--------SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +AAASI+AKV RDRL+ I ++ D+G GYP+ Sbjct: 120 RRVVALHGGESVPQVAAASIVAKVIRDRLIDILKREIGDFG----SGYPSDVKTIEWLRL 175 Query: 192 GPSCI--HRLTFRPLRNLS 208 G + R ++R LR L+ Sbjct: 176 GKIPVECVRRSWRTLRYLN 194 >gi|150401039|ref|YP_001324805.1| ribonuclease HII [Methanococcus aeolicus Nankai-3] gi|189043622|sp|A6UUM1|RNH2_META3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|150013742|gb|ABR56193.1| ribonuclease HII [Methanococcus aeolicus Nankai-3] Length = 277 Score = 131 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 60/233 (25%), Positives = 93/233 (39%), Gaps = 49/233 (21%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI 75 N + G+DE GRG + GP+V+A + + N I DSKK S +REEL+E I Sbjct: 16 NDNNKLIIGLDEAGRGPVLGPMVIALVKIKGQDLKNFEKLDIKDSKKHSKNRREELFEMI 75 Query: 76 TSSAIISISSASHQYIDKH----NIHKATLDAIYHAVENL--QVIPRS------------ 117 ++ + + IDK N++K L A + ++ + P Sbjct: 76 INNYDVRYEILEAKTIDKLMNTINLNKIELMAFTKLINSVLKEEYPNYKENSKIQTATPQ 135 Query: 118 --ALIDGRS---------------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160 ID S + ++ + A K D ++AASIIAKV RDR Sbjct: 136 IEIYIDACSSNEKAFANQIKSKLIVNDENNIKIIAEHKADENYKIVSAASIIAKVIRDRK 195 Query: 161 MRIAHKKYPDYGFDSHVGYPTAK-HQQVIKEK-----GPSCIHRLTFRPLRNL 207 + K Y + G GYP+ K Q+ + I R ++ + L Sbjct: 196 IEEYKKIYGEIG----SGYPSDKITQKYLANYVEKNRELPEIARKSWNTSKKL 244 >gi|326771770|ref|ZP_08231055.1| ribonuclease HII [Actinomyces viscosus C505] gi|326637903|gb|EGE38804.1| ribonuclease HII [Actinomyces viscosus C505] Length = 240 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 101/225 (44%), Gaps = 36/225 (16%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISHK 66 P LE + E V G+DEVGRGALAGPV V I+ ++ P G+ DSK+++ + Sbjct: 9 PDRSLEKALLET-YDYVGGLDEVGRGALAGPVSVGLAIVARRTDDDFPEGLADSKQLTAR 67 Query: 67 KREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHA---VENLQVIPRSALIDG 122 R L E + +++ AS ID+H I A A A V + P ++DG Sbjct: 68 ARTVLIEPVRGWLVDHAVAHASPAEIDEHGIIGALRVAGLRALQQVADRGHAPGVIILDG 127 Query: 123 R------------------SIPEDLPCQAFA--------VIKGDSISLSIAAASIIAKVT 156 P+D P A +K D+ +AAAS++AKV Sbjct: 128 VADWLTAPQPDLLTTLESTHAPKDSPEPAEVPSTPPVRMEVKADARCAVVAAASVLAKVE 187 Query: 157 RDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 RDRLM P YG+ S+ GY + H + + G S HR ++ Sbjct: 188 RDRLMADLDD--PGYGWASNKGYASPAHIRGLTSLGASDQHRRSW 230 >gi|168070408|ref|XP_001786800.1| predicted protein [Physcomitrella patens subsp. patens] gi|162660445|gb|EDQ48386.1| predicted protein [Physcomitrella patens subsp. patens] Length = 240 Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 45/99 (45%), Positives = 60/99 (60%), Gaps = 3/99 (3%) Query: 104 IYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163 + AVE+L V P L+D ++ D P A+I GD++S SI AASI+AKVTRDRL + Sbjct: 1 MKQAVESLGVRPCHLLVDAETVDLDFP--QTAIIHGDAVSQSIGAASILAKVTRDRLCKE 58 Query: 164 -AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 YP YG H GY T H+ ++ E GPS +HR +F Sbjct: 59 IWDLHYPAYGIAVHKGYATRHHRSMLIEHGPSPLHRRSF 97 >gi|219851606|ref|YP_002466038.1| ribonuclease HII [Methanosphaerula palustris E1-9c] gi|219545865|gb|ACL16315.1| ribonuclease HII [Methanosphaerula palustris E1-9c] Length = 219 Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 92/204 (45%), Gaps = 27/204 (13%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKREELYEKITSSAI 80 M + G+DE G+GA+ GP+VVA + G+ DSK+++ KRE+LY++I S Sbjct: 3 MPLICGVDEAGKGAVLGPMVVAGVASRDVSAVAALGVRDSKQLTRLKREDLYDQIRSICT 62 Query: 81 ISISSASHQYID--KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--------- 129 +++ S ID + + + A HA + P A +D + D Sbjct: 63 TTVTVLSAADIDLARESATMNMIVARGHAAVISTLTPTLAYVDACDVNADRYRETVTALL 122 Query: 130 ----PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 CQ A + DS +AAASIIAKVTRDRL+ + G GYP+ ++ Sbjct: 123 EPAASCQVIAEHRADSTYPIVAAASIIAKVTRDRLVDALADECGQIG----SGYPSDRYT 178 Query: 186 QV-----IKE-KGPSCIHRLTFRP 203 I+ P R +++ Sbjct: 179 IAYLSDYIRRHHAPPACARKSWKT 202 >gi|124027720|ref|YP_001013040.1| ribonuclease HII [Hyperthermus butylicus DSM 5456] gi|189043606|sp|A2BL34|RNH2_HYPBU RecName: Full=Ribonuclease HII; Short=RNase HII gi|123978414|gb|ABM80695.1| ribonuclease HII [Hyperthermus butylicus DSM 5456] Length = 240 Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 55/214 (25%), Positives = 93/214 (43%), Gaps = 27/214 (12%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYE 73 ++ + GIDE GRG + GP+VV + + N+I G+ DSK+++ R +LY Sbjct: 1 MQRRRCRYAIGIDEAGRGPVIGPMVVVGVAVCSNDIDKLVALGVRDSKQLTPVVRAKLYG 60 Query: 74 KITSSAIIS-ISSASHQYIDKHNIHKA---TLDAIYHAVENLQVIPRSALIDGRSIPED- 128 +I A+ S I +D N+++ T + I + + P + +D PE Sbjct: 61 EILRVALHSVIVKLPPALLDAVNLNQLEVETFEYIASRIAGVHDSPEAVYVDAVGSPEKL 120 Query: 129 -------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 L + A D ++AASI+AKV RD +R+ + Y GYPT Sbjct: 121 AARLSGRLGVRVIAEPGADKTYPIVSAASIVAKVVRDAEIRMLRRLYGV----RGSGYPT 176 Query: 182 -AKHQQVIKEK------GPSCIHRLTFRPLRNLS 208 + + E+ P R T+ L+ ++ Sbjct: 177 DPETIAWLAEEYRRNPANPPWFVRRTWSTLKRIA 210 >gi|288931994|ref|YP_003436054.1| ribonuclease HII [Ferroglobus placidus DSM 10642] gi|288894242|gb|ADC65779.1| ribonuclease HII [Ferroglobus placidus DSM 10642] Length = 211 Score = 130 bits (329), Expect = 9e-29, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 29/204 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 +AGIDE G+G + GP+VV + + ++ G+ DSK++S +KR+EL EK+ Sbjct: 3 IAGIDEAGKGPVIGPLVVCGVSCEEKDVEALKKLGVKDSKRLSPEKRKELAEKLKEIVEH 62 Query: 82 SISSASHQY----IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-PEDL------- 129 S + ++K I++ +A + L P +D + PE L Sbjct: 63 ETIVISPEELNSKMEKTTINEILKEACVEIISKLN--PDVVFVDSFDVKPERLEEELKRL 120 Query: 130 -PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH-QQV 187 + A+ +G+ + +AAASIIAK RD ++ ++Y D+G GY + + ++ Sbjct: 121 TGKKVVAMHEGE-REVVVAAASIIAKCLRDEIIEELKREYGDFG----SGYASDEKTRRW 175 Query: 188 IKE---KG-PSCIHRLTFRPLRNL 207 ++E +G I R ++ + NL Sbjct: 176 LEEQIKRGKIPEIVRKRWKTVENL 199 >gi|297380504|gb|ADI35391.1| Ribonuclease HII [Helicobacter pylori v225d] Length = 154 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 7/139 (5%) Query: 73 EKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI---PE 127 +KI + I + S ID + AI +EN + IDG ++ + Sbjct: 3 DKIKTHGEIKFWVVKKSANEIDNLGLGACLKLAIQKILENGCSLANQIKIDGNTVFGLNK 62 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 P +IKGD IA AS++AK +DR MR H + +YG+D + GY T +H + Sbjct: 63 RYP-NIQTIIKGDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEA 121 Query: 188 IKEKGPSCIHRLTFRPLRN 206 + + G + HR +F L+N Sbjct: 122 MIKLGATPFHRHSF-TLKN 139 >gi|159042290|ref|YP_001541542.1| ribonuclease HII [Caldivirga maquilingensis IC-167] gi|189043570|sp|A8MAH5|RNH2_CALMQ RecName: Full=Ribonuclease HII; Short=RNase HII gi|157921125|gb|ABW02552.1| ribonuclease HII [Caldivirga maquilingensis IC-167] Length = 209 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 22/200 (11%) Query: 27 AGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 AGIDE GRG + GP+V+A + + G+ DSK+++ R LY+ I S A + Sbjct: 9 AGIDEAGRGPVIGPMVIAIVGWSNSEAEGIGVKDSKQLTPSGRSRLYKLIVSKAPCVRHV 68 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK------ 138 ID + + + L P+ P + I Sbjct: 69 IVEPSEIDYYVNRGLLNELEAIKMSELIKACSGVTRVYVDSPDPNPSRFRGFINVKDVEL 128 Query: 139 -----GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEKG 192 D ++AASI+AKV RD ++ + Y D+G GYP+ + ++ Sbjct: 129 IVLNHADESIPLVSAASIVAKVIRDTIISRLKETYGDFG----SGYPSDPRTISALRRWI 184 Query: 193 ----PSCIHRLTFRPLRNLS 208 I R ++R ++ ++ Sbjct: 185 NNGTLPPIVRRSWRTIKRMT 204 >gi|321262130|ref|XP_003195784.1| ribonuclease HI large subunit [Cryptococcus gattii WM276] gi|317462258|gb|ADV23997.1| Ribonuclease HI large subunit, putative [Cryptococcus gattii WM276] Length = 260 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 55/215 (25%), Positives = 87/215 (40%), Gaps = 33/215 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYE--KITS 77 + GIDE GRG + GP+V AA + P G +DSK +S + R+ L+E ++ S Sbjct: 36 GWIMGIDEAGRGPVLGPMVYAAAYCPLSFKPTLESIGFDDSKALSAETRQRLWETFEVHS 95 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIY----------HAVENLQVIPRSALIDGRSIPE 127 S S+ S Q I + K ++ A N + +D Sbjct: 96 PLCYSSSTLSPQDISSSMLRKVPINLNRQAEDSTVGLIQAALNRGINVTECYVDALGPAP 155 Query: 128 DLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + A+ K DS+ + AASI+AKVTRDR + + + G Sbjct: 156 QWQARLTAIFPTIKFTVCPKADSLFKIVGAASIVAKVTRDRYVHGWSEDEEEV--IRGSG 213 Query: 179 YPTAKHQQV-IKE-----KGPSCIHRLTFRPLRNL 207 YP+ Q +K+ G I R ++ ++ L Sbjct: 214 YPSDPKTQAYLKKSIDPVFGYKGIVRFSWATIKVL 248 >gi|84490178|ref|YP_448410.1| ribonuclease HII [Methanosphaera stadtmanae DSM 3091] gi|115305551|sp|Q2NEI6|RNH2_METST RecName: Full=Ribonuclease HII; Short=RNase HII gi|84373497|gb|ABC57767.1| RnhB [Methanosphaera stadtmanae DSM 3091] Length = 212 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 92/206 (44%), Gaps = 29/206 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG++ GP+V+ +++ I F G+ DSK+++ KKR + KI A Sbjct: 9 ILGIDEAGRGSVIGPLVIGGVLMKKKKIRFLNRIGVKDSKQLNMKKRTIISRKIKKIAQF 68 Query: 82 SISSASHQYIDKHNIHKATLDA-----IYHAVENLQVIPRSALIDGRSIPEDL------- 129 ID+ + L+ + ++ ++ P + ID + E+ Sbjct: 69 KTIIIPAHTIDEKRNNDINLNEIETEGMEEIIKIMK--PNACYIDCIDVRENRFHDKIQK 126 Query: 130 ---PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK--- 183 K D ++AASIIAKV RD+ + I ++Y G GYP+ K Sbjct: 127 INPNMTVVTEHKADETYKIVSAASIIAKVERDKQLEIIRQEYGSVG----SGYPSDKNTI 182 Query: 184 -HQQVIKEKGPSCIHRLTFRPLRNLS 208 + + IK I R T++ + N++ Sbjct: 183 NYLKTIKNNQFPPIIRKTWKTIENIT 208 >gi|304315158|ref|YP_003850305.1| ribonuclease HII [Methanothermobacter marburgensis str. Marburg] gi|302588617|gb|ADL58992.1| ribonuclease HII [Methanothermobacter marburgensis str. Marburg] Length = 207 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 26/204 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 V GIDE GRG + GP+VVA +++ GI DSKK++ ++R+ L KI + + Sbjct: 3 VLGIDEAGRGPVIGPLVVAGVMVPERKFSILRKMGIRDSKKLTPERRKFLARKIRRISRV 62 Query: 82 SISSASHQYIDKH-----NIHKATLDAIYHAVENLQVIPRSALIDGRSI-PEDL------ 129 S ID+ N+++ AI + + P S +ID + PE L Sbjct: 63 FTVKISASDIDRMREKGFNLNEIEKIAIKRIIA--EAQPDSVIIDSVDVKPERLTEEIRS 120 Query: 130 ---PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + A D+ +AAASIIAKV RD + K+ G D GYP+ + Sbjct: 121 HFGDIEVKAEHGADAKYYPVAAASIIAKVERDLEIERIQKRNRKLG-DIGSGYPSDPRTR 179 Query: 187 VIKEK----GPSCIHRLTFRPLRN 206 E R ++ ++ Sbjct: 180 AFLESFSYDELPDFVRKSWATVQK 203 >gi|281202692|gb|EFA76894.1| hypothetical protein PPL_09646 [Polysphondylium pallidum PN500] Length = 1257 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 53/246 (21%), Positives = 97/246 (39%), Gaps = 48/246 (19%) Query: 3 CNSIPERPHFELEAMVREKNMWPV-AGIDEVGRGALAGPVVVAAIILDPNNIP----FGI 57 + P+ P + ++ + + V GIDE GRG + GP+V AA + N+ Sbjct: 971 NETAPDIPLY-MDMELDKSEYGVVTMGIDEAGRGPVLGPLVYAACYVPDCNLERMRKLRF 1029 Query: 58 NDSKKISHKKREELYEKITSS-------------AIISISSASHQYIDKHNIHKATLDAI 104 +DSKK++ +RE L++ I + +++S S Q + +I + + Sbjct: 1030 DDSKKLTEAQRETLFKTILGNYELLGFVSDVNEPSMLSEKMLSKQQVSLDSISHGSAFNL 1089 Query: 105 YHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI----------KGDSISLSIAAASIIAK 154 V + S +D P + K DS+ ++AASI AK Sbjct: 1090 IQQVLDKGYNIESLYVDTVGPPAKYEAKIRVAFPSIKNVVVSKKADSLYPIVSAASICAK 1149 Query: 155 VTRDRLMRIAHKKYPDYGFDS-----------HVGYPT-AKHQQVIKE-----KGPSCIH 197 V RDR+++ + YG ++ GYP+ + ++ G I Sbjct: 1150 VIRDRIIKATD--FEKYGSNASGQNAPINTNIGSGYPSDPATKSWLRNNRDKVFGYPDIV 1207 Query: 198 RLTFRP 203 R +++ Sbjct: 1208 RFSWKT 1213 >gi|294495980|ref|YP_003542473.1| RNase HII [Methanohalophilus mahii DSM 5219] gi|292666979|gb|ADE36828.1| RNase HII [Methanohalophilus mahii DSM 5219] Length = 215 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 33/208 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI- 80 +AGIDE G+G + GP+ VA +I+D + I G+ DSKK+S K+RE L +I A Sbjct: 3 IAGIDEAGKGPVIGPMCVAGVIMDESKINALKNLGVADSKKLSPKRRENLARQIRKYADG 62 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIPEDLPCQ------ 132 I I ID+ + D + ++ + P A +D + + + Sbjct: 63 IFIQEIEACQIDELRNIMSMNDIMIRGFSSVLENLKPDLAYVDAADVNAERFGKKLLAAF 122 Query: 133 -----------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + D I ++AASIIAKV RD L+ D GYP+ Sbjct: 123 EKKHEREKKPEIISEHGADDIYPIVSAASIIAKVRRDELIGNIKT---AINEDFGSGYPS 179 Query: 182 -----AKHQQVIKEKG-PSCIHRLTFRP 203 Q+ + + G R +++ Sbjct: 180 DPKTKKFLQEWMDKNGNLPDFVRHSWKT 207 >gi|183221052|ref|YP_001839048.1| putative ribonuclease H [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167779474|gb|ABZ97772.1| Putative ribonuclease H [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 154 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 47/140 (33%), Positives = 68/140 (48%), Gaps = 28/140 (20%) Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSA-----------------------LIDGR 123 S ++ID+ NI++A I A L V PR +DG Sbjct: 2 SAKFIDRFNINQAIFYGISRA---LPVNPRQVTGHLHKTGIPLGTQTKETLAPFLFVDGN 58 Query: 124 -SIPEDLPCQAF-AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + P + + ++ KGD + SI+AASI+AK RD M KYP YGF H GY T Sbjct: 59 YKLKIHKPIEGYLSIPKGDDLVPSISAASILAKTYRDEYMEKMDAKYPGYGFAKHKGYGT 118 Query: 182 AKHQQVIKEKGPSCIHRLTF 201 +H++ +++ G S IHRL+F Sbjct: 119 EEHREALRKLGISPIHRLSF 138 >gi|170289973|ref|YP_001736789.1| ribonuclease HII [Candidatus Korarchaeum cryptofilum OPF8] gi|170174053|gb|ACB07106.1| ribonuclease HII [Candidatus Korarchaeum cryptofilum OPF8] Length = 217 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 89/206 (43%), Gaps = 28/206 (13%) Query: 27 AGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI-I 81 GIDE GRG + GP+VVAA+IL G+ DSK +S ++REEL+ I SA Sbjct: 1 MGIDEAGRGPVIGPMVVAAVILKRREAKRLKEMGVTDSKLLSAERREELFPMIIESAESY 60 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDG------------RSIPE 127 I + ID+ + L ++ P ++D R Sbjct: 61 LIKVIEPKRIDEAVSKNMLNLLEAEVMSELIRELRPARVIVDSPMRNCRKFSDVLREFLG 120 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP-TAKHQQ 186 D + A K DS + +A+ASIIAKV RDR +R + G + GYP K ++ Sbjct: 121 DSSVKIIAENKADSKYIQVASASIIAKVERDRRIRELSEL---TGVEIGSGYPGDPKTRE 177 Query: 187 VIKE--KG---PSCIHRLTFRPLRNL 207 I+ KG P R + + L Sbjct: 178 AIRMILKGAEFPRDQVRWKWATINRL 203 >gi|171184725|ref|YP_001793644.1| ribonuclease HII [Thermoproteus neutrophilus V24Sta] gi|254807995|sp|B1YB67|RNH2_THENV RecName: Full=Ribonuclease HII; Short=RNase HII gi|170933937|gb|ACB39198.1| ribonuclease HII [Thermoproteus neutrophilus V24Sta] Length = 198 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 20/193 (10%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSSA-----II 81 G+DE GRG + GP+V+A ++ D + G+ DSK++S ++RE LY+ I +A ++ Sbjct: 7 GVDEAGRGPVVGPMVIAVVVGDGGVLARLGVRDSKRLSPERRERLYQLILEAADCVNYVV 66 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA---LIDGRSIPEDL----PCQAF 134 + Y+ + ++ LD +E +D R L + Sbjct: 67 VEPAVVDTYVWRGLLNALELDYTAKLIELCPADVYYVDSPDVDPRRYGSALEFITGRRVV 126 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG-- 192 A+ KG+S+ +AAASI+AKV RDRL+ + K+ D+G GYP+ + + G Sbjct: 127 AMHKGESV-PQVAAASIVAKVVRDRLVALLKKEVGDFG----SGYPSDPRTREWLKWGRL 181 Query: 193 PSCIHRLTFRPLR 205 P R ++R LR Sbjct: 182 PPECVRWSWRTLR 194 >gi|329947878|ref|ZP_08294810.1| ribonuclease HII [Actinomyces sp. oral taxon 170 str. F0386] gi|328523502|gb|EGF50600.1| ribonuclease HII [Actinomyces sp. oral taxon 170 str. F0386] Length = 240 Score = 127 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 94/226 (41%), Gaps = 36/226 (15%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII---LDPNNIPFGINDSKKISH 65 RP LE + E + + V G+DEVGRGALAGPV V I + P + DSK+++ Sbjct: 8 RPDRSLENELLEAHEY-VGGLDEVGRGALAGPVSVGLAIVGRCTDDAFPVDLADSKQLTA 66 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHA---VENLQVIPRSALID 121 + R +L E + + +++ AS ID+ I A A A V + P ++D Sbjct: 67 RMRTDLVEPVRGWLLDHAVAHASPAEIDERGIVGALRLAGRRALRQVADRGHAPGIIILD 126 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSI---AAA-----------------------SIIAKV 155 G + P GD A A S++AKV Sbjct: 127 GVADWLTAPQPDLLTTWGDGQPSQAWHEATAEPPTPPVRMEVKADARCAVVAAASVLAKV 186 Query: 156 TRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 RD LM P YG+ S+ GY + H + + G S HR ++ Sbjct: 187 ERDSLMTDLTD--PGYGWASNKGYASPAHVAGLADLGASDQHRRSW 230 >gi|328907963|gb|EGG27723.1| ribonuclease HII [Propionibacterium sp. P08] Length = 119 Score = 127 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 1/113 (0%) Query: 94 HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIA 153 + +A + + AV L + P L DG + + L + KGDS+ +AAASI+A Sbjct: 1 MGMQEADISGLRRAVARLGIEPGYVLSDGFPV-DGLTVPDLGMWKGDSVCACVAAASIVA 59 Query: 154 KVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 KV RDR+M ++ P Y F H GY TA H++ ++E GPSC HR+++ ++ Sbjct: 60 KVVRDRIMIAMDREVPGYDFAVHKGYATALHRRRLEELGPSCQHRMSYANVQR 112 >gi|20090807|ref|NP_616882.1| ribonuclease HII [Methanosarcina acetivorans C2A] gi|34395791|sp|Q8TPF4|RNH2_METAC RecName: Full=Ribonuclease HII; Short=RNase HII gi|19915872|gb|AAM05362.1| ribonuclease Hii [Methanosarcina acetivorans C2A] Length = 223 Score = 127 bits (321), Expect = 7e-28, Method: Composition-based stats. Identities = 49/214 (22%), Positives = 91/214 (42%), Gaps = 35/214 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI- 80 +AGIDE G+G + GP+ + + ++ + G+ DSKK++ KKRE+L +I A Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKIEESRAHILKVLGVADSKKLTPKKREQLASQIKKHADG 62 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIPEDL--------- 129 I + ID+ + + + + Q+ P D + + Sbjct: 63 FFILEITPAQIDELRKIMSMNEIMVICFAKVLEQLKPDIVYADAADVKAERFAENLRRQY 122 Query: 130 ---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + ++ + D+I ++AASIIAKV RD L+ K ++ D GYP Sbjct: 123 AKTNPAHAKKIEIISMHQADAIYPVVSAASIIAKVRRDELIEEIKK---EWSVDFGSGYP 179 Query: 181 TAKHQQV-IKEKG------PSCIHRLTFRPLRNL 207 + + + + G I R +++ + N+ Sbjct: 180 SDPKTKAFLLKWGKEHDGKFPEIVRQSWQTVENI 213 >gi|58271424|ref|XP_572868.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] gi|57229127|gb|AAW45561.1| conserved hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] Length = 260 Score = 127 bits (321), Expect = 7e-28, Method: Composition-based stats. Identities = 53/217 (24%), Positives = 84/217 (38%), Gaps = 33/217 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK--I 75 + GIDE GRG + GP+V AA + P G +DSK +S + R+ L+E + Sbjct: 34 GEGWIMGIDEAGRGPVLGPMVYAAAYCPLSFKPILESIGFDDSKALSAETRQTLWESFGV 93 Query: 76 TSSAIISISSASHQYIDKHNIHKATLDAIY----------HAVENLQVIPRSALIDGRSI 125 S S+ S Q I + + K ++ A N + +D Sbjct: 94 HPPLCYSSSTLSPQDISSNMLRKVPINLNRQAEDATVGLIQAALNRGINVTECYVDALGP 153 Query: 126 PEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + A+ K DS+ + AASI+AKVTRDR + + + Sbjct: 154 APQWQARLTAIFPTIKFTVCPKADSLFKIVGAASIVAKVTRDRYVHGWSQDEEEV--IRG 211 Query: 177 VGYPTAKHQQVIKE------KGPSCIHRLTFRPLRNL 207 GYP+ Q + G I R ++ ++ L Sbjct: 212 SGYPSDPKTQAYLKGSIDPVFGYKGIVRFSWATVKVL 248 >gi|148643039|ref|YP_001273552.1| ribonuclease HII [Methanobrevibacter smithii ATCC 35061] gi|222445276|ref|ZP_03607791.1| hypothetical protein METSMIALI_00904 [Methanobrevibacter smithii DSM 2375] gi|261350165|ref|ZP_05975582.1| ribonuclease HII [Methanobrevibacter smithii DSM 2374] gi|189043626|sp|A5ULV6|RNH2_METS3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|148552056|gb|ABQ87184.1| ribonuclease HII, RnhB [Methanobrevibacter smithii ATCC 35061] gi|222434841|gb|EEE42006.1| hypothetical protein METSMIALI_00904 [Methanobrevibacter smithii DSM 2375] gi|288860951|gb|EFC93249.1| ribonuclease HII [Methanobrevibacter smithii DSM 2374] Length = 207 Score = 127 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 80/204 (39%), Gaps = 25/204 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 V GIDE GRG++ GP+V+A +I+ G+ DSK+++ +R L K+ Sbjct: 3 VLGIDEAGRGSVLGPLVIAGVIVPEKMDIVLERMGVKDSKRLTPNRRTILSRKLKKMFEY 62 Query: 82 SISSASHQYIDKHNIHKATLDAIYH-----AVENLQVIPRSALIDG---------RSIPE 127 + S Q ID L+ I + NL P A++D + Sbjct: 63 DLVVISAQDIDNMRADGINLNEIERIGMEKILSNLN--PEKAIVDAVDIKAERFQNKLAN 120 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----TAK 183 D A K D + ++AASIIAK RD + +K Y G GYP T K Sbjct: 121 DTGVNVVAEHKADDNYIEVSAASIIAKQERDAHIAEINKDYIKMG-GIGSGYPSDPITKK 179 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 R ++ + + Sbjct: 180 FLTNFTYDEMPDFVRKSWATVEKM 203 >gi|15679041|ref|NP_276158.1| ribonuclease HII [Methanothermobacter thermautotrophicus str. Delta H] gi|7227913|sp|O27102|RNH2_METTH RecName: Full=Ribonuclease HII; Short=RNase HII gi|2622126|gb|AAB85519.1| ribonuclease HII [Methanothermobacter thermautotrophicus str. Delta H] Length = 206 Score = 127 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 26/204 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 V GIDE GRG + GP+VVA +++ G+ DSKK++ ++R L KI A + Sbjct: 3 VLGIDEAGRGPVIGPLVVAGVMIPERKFSILRKMGVKDSKKLTPERRRFLARKIRRIARV 62 Query: 82 SISSASHQYIDKH-----NIHKATLDAIYHAVENLQVIPRSALIDGRSI-PEDL------ 129 S ID+ N+++ AI + + P +ID + PE L Sbjct: 63 FTVKISASDIDRMRERGFNLNEIEKIAIKRIIP--EAQPDRVIIDSVDVKPERLEEEIRS 120 Query: 130 ---PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQ 185 + A D+ +AAASIIAKV RD + KK G D GYP+ + + Sbjct: 121 HFGEIEVTAEHGADTRYYPVAAASIIAKVERDLEIESIQKKNRKLG-DIGSGYPSDPRTR 179 Query: 186 QVIKEK---GPSCIHRLTFRPLRN 206 + ++ R ++ ++ Sbjct: 180 EFLESFTYDELPDFVRRSWATVQK 203 >gi|118431079|ref|NP_147280.2| ribonuclease HII [Aeropyrum pernix K1] gi|150421651|sp|Q9YET5|RNH2_AERPE RecName: Full=Ribonuclease HII; Short=RNase HII gi|116062405|dbj|BAA79461.2| ribonuclease HII [Aeropyrum pernix K1] Length = 225 Score = 127 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 96/209 (45%), Gaps = 27/209 (12%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS 78 M V G+DE GRG+L G +VVA ++ + G+ DSK++S R ELY +I+ Sbjct: 1 MGIVVGVDEAGRGSLVGDLVVAGFAVEEARLGELQSLGVRDSKQLSPAARVELYREISGV 60 Query: 79 AIISISSASHQYIDKHNIH----KATLDAIYHAVENLQVIPRSALIDGRSIPEDL----- 129 ++ + ID NI+ KA + + V L V P ++D + L Sbjct: 61 GFFTVEAIRPWEIDGENINILVTKAVEEIVSRIVSYLGVHPSLVVVDKYGDVQGLRLALT 120 Query: 130 -----PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AK 183 P K DS ++AASI+AKV RD +++ + Y GYP+ + Sbjct: 121 RLGIEPRSILVEEKADSRYPVVSAASIVAKVVRDARLQVLRRMYGV----RGSGYPSDPE 176 Query: 184 HQQVIKE---KGPSC-IHRLTFRPLRNLS 208 ++ ++E +G + + R T+ +R L Sbjct: 177 TREWVREVFARGEAPRVIRYTWSTVRKLG 205 >gi|224001680|ref|XP_002290512.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220973934|gb|EED92264.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 249 Score = 127 bits (320), Expect = 9e-28, Method: Composition-based stats. Identities = 58/218 (26%), Positives = 88/218 (40%), Gaps = 37/218 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKREELYEKITSSAIIS- 82 + GIDE GRG + GP+ AA P +IP G NDSK++S +KR L+++I S I Sbjct: 1 ILGIDEAGRGPVLGPMTYAAAYWSPTATDIPEGFNDSKQLSAEKRASLFDEIKRSDSIGF 60 Query: 83 ---ISSASHQYIDKHNIHKATLDAIYH--------AVENLQVIPRSALIDGRSIPEDLPC 131 + AS + L+A+ H AV + V +A ID +P+ Sbjct: 61 VLRVLHASEISRNMLRSEPYNLNAMSHDAAMEMIWAVLDSGVKIETAYIDTVGMPDAYRS 120 Query: 132 QAFAVI-----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY----GFDSH 176 + V K D+ +AAS++AK +RD L+ Y G + Sbjct: 121 KLERVFQGHNIEFIVEKKADAKYAPCSAASVVAKESRDTLIANWKWTETSYEPKDGRNFG 180 Query: 177 VGYPTAKHQQVIKE--------KGPSCIHRLTFRPLRN 206 GYP+ E G R ++ P + Sbjct: 181 SGYPSDPKCTTWMENNLNVDAPFGYPDFVRFSWGPAKK 218 >gi|328774049|gb|EGF84086.1| hypothetical protein BATDEDRAFT_8789 [Batrachochytrium dendrobatidis JAM81] Length = 290 Score = 127 bits (320), Expect = 9e-28, Method: Composition-based stats. Identities = 52/215 (24%), Positives = 84/215 (39%), Gaps = 36/215 (16%) Query: 25 PVAGIDEVGRGALAGPVVVAAI---ILDPNNIP-FGINDSKKISHKKREELYEKITSSAI 80 + G+DE GRG + GP+V A I + + G DSK ++ +R++L+ I + Sbjct: 62 CILGVDEAGRGPVLGPMVYAVCYTLISHQDKLKDIGFADSKVLNETQRDKLFATIEKQSE 121 Query: 81 ---ISISSASHQYIDKHNIHKATLDAIYHA----------VENLQVIPRSALIDGRSIPE 127 + + S Q I + + +A + A V + V + +D PE Sbjct: 122 WIGWAATVCSPQDISESMLRRAKYNLNALAHDTTINLIQSVLDQGVNIQEVYVDTVGSPE 181 Query: 128 --------DLPCQAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---D 174 P V+ K DS+ ++AASI AKVTRD ++ P Sbjct: 182 SYQAKLAKRFPKIGKIVVSKKADSLFPIVSAASICAKVTRDAILCNWEFVEPGIDSTQRA 241 Query: 175 SHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203 GYP K +K+ G I R ++ Sbjct: 242 FGSGYPADPKTVAWLKKHLDPVFGFPRIVRFSWST 276 >gi|329571610|gb|EGG53291.1| ribonuclease HII [Enterococcus faecalis TX1467] Length = 103 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 46/104 (44%), Positives = 68/104 (65%), Gaps = 2/104 (1%) Query: 104 IYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163 + A+++L P LID + D+P ++IKGD+ S+SIAAASIIAKVTRDRLM Sbjct: 1 MKMAIDDLAFAPDYLLIDAMQL--DVPQPQESLIKGDARSISIAAASIIAKVTRDRLMEE 58 Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 + YP YGF ++ GY T +H +++ G + IHR TF P++++ Sbjct: 59 YDELYPGYGFKNNAGYGTKEHLLGLEKYGVTPIHRRTFAPIKDM 102 >gi|292656107|ref|YP_003536004.1| ribonuclease H II [Haloferax volcanii DS2] gi|291372875|gb|ADE05102.1| ribonuclease H II [Haloferax volcanii DS2] Length = 215 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 28/205 (13%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 G+DE G+G + GP+V AA+ DP+ +P GI DSK+++ ++REEL ++ IS+ A Sbjct: 3 IGVDEAGKGPVLGPMVAAAVRGDPDALPDGIADSKRLAPERREELAAELRERDDISVGVA 62 Query: 87 --SHQYID--KHNIHKATLDAIYHAVENLQVIPRSALID---------GRSIPEDL---- 129 + ID + +++ T+ A A + V + D GR + E L Sbjct: 63 FVEPETIDDPETDMNLLTVRAQVEAAAEVAVDADELVCDAGDVSESRFGRRVREGLAEAG 122 Query: 130 -PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA-----K 183 A + D + AASI+AKV RDR + +Y + G GYP+ Sbjct: 123 VSVAVRAQHRADDEHAIVGAASIVAKVERDRRVEAIADEYGEVG----SGYPSDGTTREF 178 Query: 184 HQQVIKEKGPSC-IHRLTFRPLRNL 207 ++ +++ G R ++ +L Sbjct: 179 LREYVRDHGILPDCARKSWSTCADL 203 >gi|261402294|ref|YP_003246518.1| ribonuclease HII [Methanocaldococcus vulcanius M7] gi|261369287|gb|ACX72036.1| ribonuclease HII [Methanocaldococcus vulcanius M7] Length = 233 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 93/221 (42%), Gaps = 42/221 (19%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI 80 + G+DE GRG + GP+VV A ++ + G+ DSK +S KR +L +++ Sbjct: 4 IIVGVDEAGRGPVLGPMVVCAFAIEKDREDLLRDLGVKDSKLLSKSKRSQLKKQLERIGY 63 Query: 81 ISISSASHQYI----DKHNIHKATLDAIYHAV------ENLQVIPRSALIDG-------- 122 + + I +K N+++ ++A + NL+ +D Sbjct: 64 VKKKILTANEINTLMNKINLNEIEINAFSEVIMGLINDLNLKDEYLEIYVDACSTNAKKF 123 Query: 123 -----RSIPE-----DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 I + +L + A K D +++ASIIAK RD ++ KKY + G Sbjct: 124 ENELKNRIKDIENQKNLKIKVIAEHKADLKYPIVSSASIIAKADRDEIIEQYKKKYGEIG 183 Query: 173 FDSHVGYPT-AKHQQVI----KEKGPSC-IHRLTFRPLRNL 207 GYP+ K + + +E G I R+ ++ + + Sbjct: 184 ----SGYPSDPKTIKFLEKYFEEYGSLPNIARVHWKTCKRI 220 >gi|257052068|ref|YP_003129901.1| ribonuclease HII [Halorhabdus utahensis DSM 12940] gi|256690831|gb|ACV11168.1| ribonuclease HII [Halorhabdus utahensis DSM 12940] Length = 234 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 24/201 (11%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG+DE G+G + G + A ++ DP ++P ++DSK +S ++REEL I A +++S Sbjct: 25 AGVDEAGKGPVLGSMFAACVVADPADLPDDVDDSKDLSAERREELATVIRDRAHAVAVSE 84 Query: 86 ASHQYIDKHNIHKATLDAIYH-------AVENLQVIPRSALIDGRSIPEDLPCQA----- 133 ID TL + H A + L + + + + Sbjct: 85 IPVARIDDTETDMNTLTVVAHAEALEPVASDGLATYLDAGDTNAVRFERRVADRIEADLD 144 Query: 134 -FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----TAKHQQ-V 187 A D+ + AASIIAKV RD + +Y D G GYP T + Sbjct: 145 LRAEHGADAAYPIVGAASIIAKVERDAHVAELAAEYGDLG----SGYPGDSTTRDFLEDY 200 Query: 188 IKEKGPSCI-HRLTFRPLRNL 207 I E G R +++ R++ Sbjct: 201 IAEHGELPACARESWQTSRDV 221 >gi|147920602|ref|YP_685601.1| ribonuclease H (RNase H) [uncultured methanogenic archaeon RC-I] gi|121688011|sp|Q0W5R8|RNH2_UNCMA RecName: Full=Ribonuclease HII; Short=RNase HII gi|110620997|emb|CAJ36275.1| ribonuclease H (RNase H) [uncultured methanogenic archaeon RC-I] Length = 224 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 57/210 (27%), Positives = 88/210 (41%), Gaps = 27/210 (12%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYE 73 + +K + GIDE GRG + GP+VV II++ ++P G+ DSKK+S KKREE Sbjct: 1 MAKKRTSTIMGIDEAGRGPVIGPLVVCGIIVEEKDLPAIEAMGLKDSKKLSAKKREEFAA 60 Query: 74 KITSSAIISISSASHQYIDKHNIHKATLD-AIYHAVENL--QVIPRSALIDGRSIP---- 126 + + +S Q ID + L+ + L P A +D + Sbjct: 61 ALKNKYKYELSVLPPQEIDARFESEDNLNRLEVNCFAGLIRSAKPTIAYLDACDVNAERF 120 Query: 127 -------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 D + + + DS ++AASIIAKV RD L+R +K + D GY Sbjct: 121 GINIKKCLDFELEIVSAHEADSKYPIVSAASIIAKVHRDSLIREISEKMGE---DVGSGY 177 Query: 180 PT-AKHQQVIKEK-----GPSCIHRLTFRP 203 P +K R +++ Sbjct: 178 PADPVTISFLKNYYMKHKCLPDCARKSWKT 207 >gi|294891483|ref|XP_002773596.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC 50983] gi|239878780|gb|EER05412.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC 50983] Length = 339 Score = 125 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 54/220 (24%), Positives = 92/220 (41%), Gaps = 43/220 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI--- 80 GIDE GRG + GP+V A I D G NDSK+++ KR EL+E I + A+ Sbjct: 57 GIDEAGRGPVFGPMVYGAAISDIRKSDALGKMGFNDSKQLTEAKRSELFEDIHNEALKDD 116 Query: 81 ----ISISSASHQYI-------DKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIP 126 ++ + I +K N+++ + + +E+ + + +D P Sbjct: 117 GVLGFAVHVLTAHEISTKMLRRNKVNLNRISHETAIGLIEHALSEGINVKEVYVDTVGDP 176 Query: 127 EDLPCQAFAVI------------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174 E + ++ K D+I +AASI AKV RDRL+ YP+ G Sbjct: 177 ERYQNKLSSIFKRRGVDTIVVCKKADAIYPICSAASICAKVIRDRLVEEDISYYPEVG-- 234 Query: 175 SHVGYP-TAKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 GYP A+ + +++ R ++ + + Sbjct: 235 --SGYPGDAQTVEWLEKVVDPVFLFPRQIRFSWSTIEEIE 272 >gi|224097610|ref|XP_002311009.1| predicted protein [Populus trichocarpa] gi|222850829|gb|EEE88376.1| predicted protein [Populus trichocarpa] Length = 297 Score = 125 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 91/220 (41%), Gaps = 37/220 (16%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI 80 + GIDE GRG + GP+V + + DSK + +KREEL+EK+ ++ + Sbjct: 15 CIMGIDEAGRGPVLGPMVYGCLYCARSYEKTLSTLKFADSKTLKEEKREELFEKLKANEL 74 Query: 81 ISIS--SASHQYIDKHNIHKATLDAIYHA----------VENLQVIPRSALIDGRSIPED 128 I + + + + K ++ + V N+ V+ +D PE Sbjct: 75 IGWAVDVIDPRELSAKMLKKIKINLNEISHDSASGLVTRVLNMGVLLTDVYVDTVGDPEK 134 Query: 129 LPCQ-------AFAVI--KGDSISLSIAAASIIAKVTRDRLMRI--AHKKYPDYGFDSHV 177 + V+ K DS+ ++ ASI+AKVTRDR +R + + + Sbjct: 135 YRIKLSERFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALRDWVLDETAENMTRNFGS 194 Query: 178 GYP-TAKHQQVIKEK-----GPSCIHRLTFRPL----RNL 207 GYP + + +++ G + R ++ +N+ Sbjct: 195 GYPGDPETKSWLEKHQHSVFGFPSLVRFSWGTCTSYSKNM 234 >gi|123502031|ref|XP_001328204.1| ribonuclease HII family protein [Trichomonas vaginalis G3] gi|121911144|gb|EAY15981.1| ribonuclease HII family protein [Trichomonas vaginalis G3] Length = 269 Score = 125 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 53/219 (24%), Positives = 88/219 (40%), Gaps = 33/219 (15%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSA 79 K + GIDE GRG GP+V + I P ++DSKK++ ++REE++++I Sbjct: 16 KGIELEMGIDEAGRGPALGPMVYSGAIAPNKYEWPKDVDDSKKLTAEQREEIFDEIKKLP 75 Query: 80 I-ISISSASHQYID-------------KHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 + ++ S + I H A D + A + + ++ +D I Sbjct: 76 VGFAVRVISAEEISAKQTALVNPPISLNTVSHHAARDLV-QAFLDKGLNIKALYVDTVGI 134 Query: 126 PEDL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF--D 174 E + K D+ + AASI AKVTRDRL+ + P D Sbjct: 135 AESYQDWLQDKFPNIKVTVRAKADATYKVVGAASICAKVTRDRLLADFKFEEPGLEISHD 194 Query: 175 SHVGYPTAKHQQVIKE------KGPSCIHRLTFRPLRNL 207 GYP+ E G + R ++P++ + Sbjct: 195 WGSGYPSDPKTSNWLETNFDPVFGYPSVARFDWKPIKMM 233 >gi|257387378|ref|YP_003177151.1| ribonuclease HII [Halomicrobium mukohataei DSM 12286] gi|257169685|gb|ACV47444.1| ribonuclease HII [Halomicrobium mukohataei DSM 12286] Length = 210 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 48/195 (24%), Positives = 81/195 (41%), Gaps = 23/195 (11%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87 G+DE G+G + G + AA+ DP ++P G+ DSK I ++RE L E I S A + ++ + Sbjct: 4 GVDEAGKGPVLGSMFAAAVRCDPGDLPDGVGDSKGIPDERRERLAEAIRSVAAVGLAEIT 63 Query: 88 HQYIDKHNIHKATLDAIYH-------AVENLQVIPRSALIDGRSIPEDLPCQAFAVI--- 137 + ID TL H A + L + + D + + + I Sbjct: 64 PERIDDPETDMNTLTVAAHAEALSAVATDGLSGLVDAGDTDAERFGRRVADRVDSEIDLG 123 Query: 138 ---KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIK---- 189 D + AASI+AK R+ + ++ G GYP+ ++ +K Sbjct: 124 SAHGADETDPLVGAASIVAKSAREAHVAALADEFGAVG----SGYPSDPATREFLKRYVD 179 Query: 190 EKGPSC-IHRLTFRP 203 E G R ++ Sbjct: 180 EHGALPDCARTSWST 194 >gi|161528901|ref|YP_001582727.1| ribonuclease HII [Nitrosopumilus maritimus SCM1] gi|160340202|gb|ABX13289.1| ribonuclease HII [Nitrosopumilus maritimus SCM1] Length = 205 Score = 124 bits (313), Expect = 6e-27, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 98/206 (47%), Gaps = 30/206 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-SAI 80 + G+D+ GRG++ GP+V++ I ++ N+ G+ DSKK+S K RE LY++I Sbjct: 3 ICGVDDAGRGSMLGPLVISGISINKKNLRKLSSLGVKDSKKLSPKSRELLYKQIIELVDD 62 Query: 81 ISISSASHQYIDKHNIHK--ATLDAIYHAVENLQVIPRSALIDGRSIPEDL--------- 129 I+ + + ID L+A Y A L++ P ++ +D + Sbjct: 63 YYIAKITPRSIDASVKKHGLNELEAKYMAKVVLKLDPDTSYVDSCDVNPKRFGKEISKLS 122 Query: 130 -PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA-KHQQV 187 + + DS + ++AASIIAKVTRDR + K Y D GYP+ K + Sbjct: 123 DNHKIKSYHHADSRFVVVSAASIIAKVTRDRAIEKLRKTY-----DLGSGYPSDSKTVKF 177 Query: 188 IKEK------GPSCIHRLTFRPLRNL 207 + P+ + R +++P++ + Sbjct: 178 VTRYYKTSKSLPTFV-RKSWKPVQKI 202 >gi|291333356|gb|ADD93062.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S05-C10] Length = 830 Score = 124 bits (313), Expect = 6e-27, Method: Composition-based stats. Identities = 55/185 (29%), Positives = 87/185 (47%), Gaps = 28/185 (15%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSS 78 M + G DE GRG + GP+VVAA+ + + I G++DSK +S KKREEL + I Sbjct: 1 MLMIVGADEAGRGPVLGPLVVAAVAIPATDLQRLIDLGVDDSKALSPKKREELNQIIHQE 60 Query: 79 AII--SISSASHQYID----KHNIHKATLDAIYHAVENLQV-IPRSALIDGRSIPEDLPC 131 SI S + ID K ++ +D A+++L+V ++D E Sbjct: 61 PTWQVSIIECSPERIDVTMEKKTLNDLEVDLFGEAIDSLEVERIEELILDACDTNEARFG 120 Query: 132 Q--------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + + D+ + + AASI+AKV RD++++ K D GF+ Sbjct: 121 RNVASKISSGKIVETVISKHGADAENPVVGAASIVAKVHRDKVIQSIAK---DRGFNVGS 177 Query: 178 GYPTA 182 GYP+ Sbjct: 178 GYPSD 182 >gi|322372194|ref|ZP_08046735.1| ribonuclease HII [Haladaptatus paucihalophilus DX253] gi|320548203|gb|EFW89876.1| ribonuclease HII [Haladaptatus paucihalophilus DX253] Length = 212 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 87/201 (43%), Gaps = 26/201 (12%) Query: 28 GIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKIT--SSAIISIS 84 G+DE GRG + G + AA+ I DP+++P GI+DSK +S ++REEL + + + ++ Sbjct: 3 GVDEAGRGPVLGSMFAAAVAIDDPDDLPDGIDDSKNLSPERREELAAALRADEAVAVGVA 62 Query: 85 SASHQYIDKHNIHKATLD--AIYHAVENLQVIPRSALIDGRSIPEDLPCQ---------- 132 + ID TL A A+ + ++D E + Sbjct: 63 EITTTRIDDPETDMNTLTVAAHGEAISRIVSGGERGIVDACDTSESRFARRVAAAVGPEI 122 Query: 133 -AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH-----QQ 186 A D + AASI+AKV RD + +++ G GYP+ + ++ Sbjct: 123 TVEAEHGADETHAIVGAASIVAKVERDAHVARLAEQHGGVG----SGYPSDPNTREFLRE 178 Query: 187 VIKEKGPSCI-HRLTFRPLRN 206 ++ G R +++ ++ Sbjct: 179 YVEAHGELPECARASWQTSKD 199 >gi|76801839|ref|YP_326847.1| ribonuclease HII [Natronomonas pharaonis DSM 2160] gi|115305552|sp|Q3IRF6|RNH2_NATPD RecName: Full=Ribonuclease HII; Short=RNase HII gi|76557704|emb|CAI49287.1| ribonuclease H II [Natronomonas pharaonis DSM 2160] Length = 212 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 48/204 (23%), Positives = 85/204 (41%), Gaps = 23/204 (11%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M P+ G+DE G+G + G + VAA+ +P GI+DSK+++ +RE L +++ + I Sbjct: 1 MTPLVGVDEAGKGPVVGSMFVAAVRAPTEALPDGIDDSKRLTDDRREALADRLRDADRID 60 Query: 83 ISSAS--HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED-----------L 129 ++ ID N++ T+ A A++ + + L D + L Sbjct: 61 VAVVECQPADIDDANMNDLTVAAHAAALDGVAASGETVLCDAGDVDAGRFADRVAAAATL 120 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A D + AASIIAK R+R + ++Y G GYP+ + Sbjct: 121 DVSVAAEHGADGSDDLVGAASIIAKSARERHVEQLSEQYGAVG----SGYPSDPTTKAFL 176 Query: 190 EK------GPSCIHRLTFRPLRNL 207 + G R ++ + Sbjct: 177 REAFEQEGGFPPCVRTSWSTCERI 200 >gi|156938224|ref|YP_001436020.1| RNase HII [Ignicoccus hospitalis KIN4/I] gi|156567208|gb|ABU82613.1| RNase HII [Ignicoccus hospitalis KIN4/I] Length = 215 Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats. Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 20/199 (10%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 VAGIDE GRG + G + VA + ++ + + G+ +SK ++ KR Y I +A Sbjct: 4 MIVAGIDEAGRGPVIGSMFVALVAIEQDQLEKLVSLGLKESKMLTPNKRRYFYNLIMKTA 63 Query: 80 -IISISSASHQYIDKHNIHKATLDAIYH----AVENLQVIPRSALIDGRSIPE-----DL 129 ++ I + IDK N+ + T++ + A+ +++ I G + ++ Sbjct: 64 KLVLIKEVKAEEIDKRNLSELTIEVMKELLETALNKVKIDVVCVDIVGNGAKQRRALGEV 123 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVI 188 + KGD+ + AAASI+AK R+R + +Y D+G GYP+ K + + Sbjct: 124 FPDVIVMKKGDASCPAAAAASIVAKEARERHVSQLRARYGDFG----SGYPSDPKTLRWL 179 Query: 189 K-EKGPSCIHRLTFRPLRN 206 + I R ++ +R Sbjct: 180 SVTRPLPPIVRKKWKTIRR 198 >gi|288561094|ref|YP_003424580.1| ribonuclease HII RnhB [Methanobrevibacter ruminantium M1] gi|288543804|gb|ADC47688.1| ribonuclease HII RnhB [Methanobrevibacter ruminantium M1] Length = 219 Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 87/207 (42%), Gaps = 29/207 (14%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G+DE GRG + GP+VVA I++ G+ DSK+I+ K+R LY K+T Sbjct: 5 GLDEAGRGPVLGPMVVAGIVIPEKKEKIIERMGVKDSKRITPKRRAVLYRKLTRMFDYET 64 Query: 84 SSASHQYIDKH-----NIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--------- 129 S + ID N+++ A+ + L+ + +ID I E Sbjct: 65 VEISAKDIDLLRAKGVNLNQIEKLAMMRIIAKLK--ADTIIIDSLDIKEGRLEEEMQNFV 122 Query: 130 --PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY---PDYGFDSHVGYPT-AK 183 + A K D + + AASIIAK RD ++ +K+Y GYP+ K Sbjct: 123 GEGSKVIAEHKADDKYIVVGAASIIAKTKRDEIINQINKEYIRSTGNKDGIGSGYPSDPK 182 Query: 184 HQQVIKEKGP---SCIHRLTFRPLRNL 207 + +K R ++ ++ + Sbjct: 183 TKNFLKNYKYDEMPDFVRRSWGTVQRI 209 >gi|297571158|ref|YP_003696932.1| ribonuclease H [Arcanobacterium haemolyticum DSM 20595] gi|296931505|gb|ADH92313.1| Ribonuclease H [Arcanobacterium haemolyticum DSM 20595] Length = 224 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 65/211 (30%), Positives = 104/211 (49%), Gaps = 18/211 (8%) Query: 10 PHFELEAMVREK--NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI---PFGINDSKKIS 64 P +E + + +AG+DEVGRG++AGP V +++ + + P G+ DSK IS Sbjct: 6 PDRTVERELLAQLPAGTYLAGVDEVGRGSIAGPASVGIALVNTDTVDEFPVGLRDSKMIS 65 Query: 65 HKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENL-QVIPRSALIDG 122 RE L E + + ++ AS Q +++ I A A A+E L L+DG Sbjct: 66 AHVRESLVEPVHEWVSAYAVGHASPQDVNEAGILGALRIAAARALEQLDGFEIAGVLLDG 125 Query: 123 ----------RSIPEDLPC-QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 LP +KGD+ +AAAS++AKV RDR+M + + +P Y Sbjct: 126 SHDWWSSDGLFDAGATLPVLPVRMEVKGDARCAVVAAASVLAKVERDRIMVESAEAFPGY 185 Query: 172 GFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 GF+ + GY +A+H ++ G S HR ++ Sbjct: 186 GFERNKGYASAEHIHGLETLGASAFHRTAWK 216 >gi|331234733|ref|XP_003330025.1| ribonuclease HI large subunit [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309309015|gb|EFP85606.1| ribonuclease HI large subunit [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 349 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 61/261 (23%), Positives = 100/261 (38%), Gaps = 65/261 (24%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGIND 59 S +R E +++ W + GIDE GRG + GP+V A + G D Sbjct: 49 STSDRKDITEEEEQLKRDNW-IMGIDEAGRGPVLGPMVYGAAFCTQAFAEDKLLDLGFAD 107 Query: 60 SKKISHKKREELYEKI---------TSSAIISISSASHQYIDKHN-----------IHKA 99 SK ++H++REEL E I ++ + I + A Sbjct: 108 SKTLTHRRREELLEMIVHPPADQPLNERVEWNVKVLTPADISQGMNRRSPYNLNAQAFDA 167 Query: 100 TLDAIYHAVENLQVIPRSALID--------GRSIPEDLPCQAFAVI-KGDSISLSIAAAS 150 T + I HA++ LQ + +D + + P F V K DSI + AAS Sbjct: 168 TCEIIQHALD-LQYNLQHIYVDTLGPPKTHQMKLEQSFPGIKFTVCSKADSIYPIVGAAS 226 Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSH------------------VGYPT-AKHQQVIKE- 190 ++AKVTRD ++ H +P+ +H GYP+ + + E Sbjct: 227 VVAKVTRDAIVS--HWIHPE---STHPQKRKSSQEDEDATTSLGSGYPSDPNTVKWLSEN 281 Query: 191 ----KGPSCIHRLTFRPLRNL 207 G + R ++ ++ L Sbjct: 282 FNTIFGFGQLVRFSWGTVKTL 302 >gi|303243761|ref|ZP_07330102.1| ribonuclease HII [Methanothermococcus okinawensis IH1] gi|302486003|gb|EFL48926.1| ribonuclease HII [Methanothermococcus okinawensis IH1] Length = 305 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 57/246 (23%), Positives = 94/246 (38%), Gaps = 70/246 (28%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G+DE GRG + GP+V+A + ++P G+ DSKK+S KREELY+ I ++ + Sbjct: 42 GLDEAGRGPVLGPMVIALVKATEKDLPKFDELGLKDSKKLSRHKREELYKIIMNNYEVKS 101 Query: 84 SSASHQYIDKH----NIHKATLDAIYHAVENL---------------------------- 111 + IDK N++K + + ++ Sbjct: 102 IILEAKDIDKMMEKTNLNKIEIMVFSKLINSVLKEEYKDYKNKNHKLNNKLNNNEVNDKI 161 Query: 112 ----------QVIPRSALIDG---------RSIPEDL-----PCQAFAVIKGDSISLSIA 147 ID I L + A K D ++ Sbjct: 162 NSNKVNNNKINNKKIDIYIDACSSNEKAFSNQIKSKLVVYNDNIKIIAEHKADDKYKIVS 221 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH-----QQVIKEKGPSC-IHRLTF 201 AASI+AKV RD+++ + Y + G GYP+ K + +KE G I R ++ Sbjct: 222 AASIVAKVIRDKIIDNYKEIYGEIG----SGYPSDKTTINYLKNYVKEHGTLPEIARKSW 277 Query: 202 RPLRNL 207 + +N+ Sbjct: 278 KTSKNI 283 >gi|282165631|ref|YP_003358016.1| ribonuclease HII [Methanocella paludicola SANAE] gi|282157945|dbj|BAI63033.1| ribonuclease HII [Methanocella paludicola SANAE] Length = 217 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 48/204 (23%), Positives = 86/204 (42%), Gaps = 31/204 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 +AGIDE GRG + GP+VV + + + G+ DSK ++ KKREE KI Sbjct: 2 IAGIDEAGRGPVIGPMVVCGVSVSEKKLRKIKSMGLKDSKLLTPKKREEFAVKIKDVCEY 61 Query: 82 SISSASHQYI-----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP---------- 126 + + I D+ N+++ ++ + ++ L+ P +A +D + Sbjct: 62 ELVVVGPERIDSRANDELNLNELEVECFSNILKALR--PATAYVDACDVNAERFGINVKK 119 Query: 127 -EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----T 181 D + + D ++AASI+AKV RD L++ G + GY T Sbjct: 120 GLDFEVEVISRHNADRDYPVVSAASILAKVHRDALIKEICDS---IGENVGSGYSHDQVT 176 Query: 182 AKHQQVIKEKGPS--CIHRLTFRP 203 + + +K R +++ Sbjct: 177 IEFLKGYYKKNKCMPPFARKSWKT 200 >gi|196017000|ref|XP_002118348.1| hypothetical protein TRIADDRAFT_51212 [Trichoplax adhaerens] gi|190579064|gb|EDV19170.1| hypothetical protein TRIADDRAFT_51212 [Trichoplax adhaerens] Length = 299 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 52/216 (24%), Positives = 88/216 (40%), Gaps = 39/216 (18%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG + G +V A G+ DSK ++ R+EL++KI S + Sbjct: 32 GIDEAGRGPVLGAMVYGACYYPLSQSEKVKELGVADSKVLTEDMRDELFQKINSDDSVGW 91 Query: 83 -ISSASHQYIDKHNI-----------HKATLDAIYHAVENLQVIPRSALIDGRSIPEDL- 129 + S I + H A ++ I +++ V + +D + E+ Sbjct: 92 LVEIISPSDISTKMLARTKYSLNAVSHDAAINLIRQSIQK-GVQVKEIYVDTVGVAENYQ 150 Query: 130 --------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD---YG-FDSHV 177 K D++ ++AASIIAKVTRD+++ K+P+ Y D Sbjct: 151 NKLSELFPDITIKVTPKADALFPCVSAASIIAKVTRDKVLSNW--KFPEDESYNSSDYGC 208 Query: 178 GYPT-AKHQQVI-----KEKGPSCIHRLTFRPLRNL 207 GYP+ Q+ + K G R ++ + + Sbjct: 209 GYPSDPATQKWLNSNLDKVFGYPQFVRFSWSTCQKI 244 >gi|311248923|ref|XP_003123380.1| PREDICTED: ribonuclease H2 subunit A-like [Sus scrofa] Length = 301 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 49/217 (22%), Positives = 85/217 (39%), Gaps = 34/217 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS--- 77 V G+DE GRG + GP+V A + + DSK +S +R+ L+ K+ Sbjct: 29 CVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFAKMEEDGD 88 Query: 78 ---SA-------IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A +IS S + +++ T + + V +D +PE Sbjct: 89 FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGLPE 148 Query: 128 DL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSH 176 + K D++ ++AASI AKV RD+ +R +K D D Sbjct: 149 TYQERLQQRFPDIEVTVKAKADALYPVVSAASICAKVARDQAVRNWQFVEKLQDLDTDYG 208 Query: 177 VGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207 GYP K + +++ G R ++R +++ Sbjct: 209 SGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSI 245 >gi|221132373|ref|XP_002166509.1| PREDICTED: similar to ribonuclease H2, large subunit [Hydra magnipapillata] Length = 300 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 55/212 (25%), Positives = 86/212 (40%), Gaps = 32/212 (15%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI--- 80 GIDE GRG + GP+V + + I G DSK ++ +KR+ L I ++ Sbjct: 32 GIDEAGRGPVLGPMVYSVCYCPISMIKKLSDLGFADSKTLTEEKRDNLLSVIENNCDFIG 91 Query: 81 ISISSASHQYIDKHNI--HKATLDAIYH------------AVENLQVIPRSALIDG---- 122 +I S I + +K TL+ I H A N+ + + D Sbjct: 92 WAIKIISPTEISNEMLRRYKVTLNEISHGAAIELTRKTINAGANITEMYVDTVGDALKYQ 151 Query: 123 RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + E + V K D++ ++AASI AKV RDR ++ D D GYP Sbjct: 152 NKLSEVFDGISVKVTPKADALFPIVSAASICAKVARDRCIQNWQFPEGDIKEDYGSGYPA 211 Query: 182 -AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207 K +Q +K+ G R ++ N+ Sbjct: 212 DPKTKQWLKDVVDPVFGFPQFVRFSWSTCANI 243 >gi|150399435|ref|YP_001323202.1| ribonuclease HII [Methanococcus vannielii SB] gi|189043627|sp|A6UQ18|RNH2_METVS RecName: Full=Ribonuclease HII; Short=RNase HII gi|150012138|gb|ABR54590.1| ribonuclease HII [Methanococcus vannielii SB] Length = 244 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 52/214 (24%), Positives = 87/214 (40%), Gaps = 32/214 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 N + G+DE GRG + GP+V++ + + ++ + DSK+++ K+REE Y I Sbjct: 21 NEKIILGLDEAGRGPVLGPMVISVVKVTEKDLDKINSLDLKDSKQLTKKRREEYYNIINE 80 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP------RSALIDGRSIPE---- 127 + + + ID++ A L ID S E Sbjct: 81 CFEVQKIVLAPEKIDEYMKTSNLNKIELSAFSKLSNHFLKEYENVKIFIDACSSSEQSFL 140 Query: 128 --------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 + + A K D ++AASIIAKVTRD ++ +++ D G GY Sbjct: 141 NQFKAKLINKKVEIIAEHKADEKYKIVSAASIIAKVTRDNIIESYKEEFGDIG----SGY 196 Query: 180 P----TAKHQQV-IKEKGPSC-IHRLTFRPLRNL 207 P T + + +KE I R ++ + L Sbjct: 197 PGDPKTKEFLKRFVKEHKKLPKIARGSWATSKKL 230 >gi|34329831|gb|AAQ64005.1| ribonuclease H2 [Homo sapiens] Length = 299 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 50/212 (23%), Positives = 83/212 (39%), Gaps = 33/212 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80 V G+DE GRG + GP+V A + + DSK + +RE L+ K+ + Sbjct: 29 CVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDF 88 Query: 81 ISIS--SASHQYID-------KHNIHKATLD---AIYHAVENLQVIPRSALIDGRSIPED 128 + + S I K+N++ + D + + V +D +PE Sbjct: 89 VGWALDVLSPNLISTSMLGWVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPET 148 Query: 129 L---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177 + K D++ ++AASI AKV RD+ ++ +K D D Sbjct: 149 YQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGS 208 Query: 178 GYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203 GYP K + +KE G R ++R Sbjct: 209 GYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRT 240 >gi|3334761|emb|CAB09725.1| ribonuclease HI large subunit [Homo sapiens] Length = 299 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 50/212 (23%), Positives = 83/212 (39%), Gaps = 33/212 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80 V G+DE GRG + GP+V A + + DSK + +RE L+ K+ + Sbjct: 29 CVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDF 88 Query: 81 ISIS--SASHQYID-------KHNIHKATLD---AIYHAVENLQVIPRSALIDGRSIPED 128 + + S I K+N++ + D + + V +D +PE Sbjct: 89 VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPET 148 Query: 129 L---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177 + K D++ ++AASI AKV RD+ ++ +K D D Sbjct: 149 YQAQLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGS 208 Query: 178 GYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203 GYP K + +KE G R ++R Sbjct: 209 GYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRT 240 >gi|18312482|ref|NP_559149.1| ribonuclease HII [Pyrobaculum aerophilum str. IM2] gi|74564756|sp|Q8ZXL6|RNH2_PYRAE RecName: Full=Ribonuclease HII; Short=RNase HII gi|18159942|gb|AAL63331.1| ribonuclease HII (rnhB) [Pyrobaculum aerophilum str. IM2] Length = 212 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 20/194 (10%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSSAI-ISI 83 + GIDE GRG + GP+V+A ++ + +++ G+ DSK++S RE +YEKI A ++ Sbjct: 2 IGGIDEAGRGPVIGPMVIAIVVGESDDMIKIGVRDSKRLSPGAREAVYEKILRVAACVNY 61 Query: 84 SSASHQYID----KHNIHKATLDAIYHAVENLQVIPRSA---LIDGRSIPEDL----PCQ 132 ID + ++ L + ++ + L + Sbjct: 62 VVIEPAEIDAYVSRGMLNALELKYTAQLINLCPAEYYYVDSPDVNPKRYESGLVFATGKR 121 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKE- 190 A+ KG+++ +AAASI+AKV RDRL+++ K+ D+G GYP+ + Q ++E Sbjct: 122 VIALHKGEAV-PQVAAASIVAKVVRDRLIQLLKKEVGDFG----SGYPSDPRTLQRLREG 176 Query: 191 KGPSCIHRLTFRPL 204 + PS R ++ + Sbjct: 177 RMPSECIRWQWKTV 190 >gi|48145799|emb|CAG33122.1| JUNB [Homo sapiens] Length = 299 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 50/212 (23%), Positives = 83/212 (39%), Gaps = 33/212 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80 V G+DE GRG + GP+V A + + DSK + +RE L+ K+ + Sbjct: 29 CVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDF 88 Query: 81 ISIS--SASHQYID-------KHNIHKATLD---AIYHAVENLQVIPRSALIDGRSIPED 128 + + S I K+N++ + D + + V +D +PE Sbjct: 89 VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPET 148 Query: 129 L---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177 + K D++ ++AASI AKV RD+ ++ +K D D Sbjct: 149 YQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGS 208 Query: 178 GYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203 GYP K + +KE G R ++R Sbjct: 209 GYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRT 240 >gi|168019116|ref|XP_001762091.1| predicted protein [Physcomitrella patens subsp. patens] gi|162686808|gb|EDQ73195.1| predicted protein [Physcomitrella patens subsp. patens] Length = 307 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 84/211 (39%), Gaps = 33/211 (15%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI--I 81 GIDE GRG + GP+V + DSK ++ KREELYE + + + Sbjct: 18 GIDEAGRGPVLGPMVYGCAYCPIDQKERISTLKFADSKALTESKREELYENLKADDLMGW 77 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVE----------NLQVIPRSALIDGRSIP----- 126 ++ + + + +A ++ + E +L V +D P Sbjct: 78 AVDVIDPKDLSAKMLRRAKVNLNTISFESAMGLIRNTLDLGVFLTEVFVDTVGDPGKYQD 137 Query: 127 ---EDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIA--HKKYPDYGFDSHVGYP 180 P F V K DS+ ++AASI+AKVTRDR +R + + GYP Sbjct: 138 MLTTKFPGIRFTVSKKADSLFPIVSAASIVAKVTRDRALRDWVVDETGREVTRGFGSGYP 197 Query: 181 -TAKHQQVIKEK-----GPSCIHRLTFRPLR 205 + + +++ G + R ++ + Sbjct: 198 GDPETKTWLEDHVDPVFGFPSLVRFSWATCK 228 >gi|332252995|ref|XP_003275638.1| PREDICTED: ribonuclease H2 subunit A-like [Nomascus leucogenys] Length = 299 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 50/212 (23%), Positives = 82/212 (38%), Gaps = 33/212 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80 V G+DE GRG + GP+V A + + DSK + +RE L+ K+ Sbjct: 29 CVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLLESERERLFAKMEDRDF 88 Query: 81 ISIS--SASHQYID-------KHNIHKATLD---AIYHAVENLQVIPRSALIDGRSIPED 128 + + S I K+N++ + D + + V +D +PE Sbjct: 89 VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPET 148 Query: 129 L---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177 + K D++ ++AASI AKV RD+ ++ +K D D Sbjct: 149 YQAWLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGS 208 Query: 178 GYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203 GYP K + +KE G R ++R Sbjct: 209 GYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRT 240 >gi|84370099|ref|NP_001033623.1| ribonuclease H2 subunit A [Bos taurus] gi|110816412|sp|Q2TBT5|RNH2A_BOVIN RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|83638655|gb|AAI09683.1| Ribonuclease H2, subunit A [Bos taurus] gi|296485915|gb|DAA28030.1| ribonuclease H2 subunit A [Bos taurus] Length = 299 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 49/217 (22%), Positives = 87/217 (40%), Gaps = 34/217 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80 V G+DE GRG + GP+V A + + DSK +S +R+ L+ K+ Sbjct: 29 CVLGVDEAGRGPVLGPMVYAICYCPLSRLEDLEALKVADSKTLSESERDRLFAKMEEDGD 88 Query: 81 ---ISISSASHQYID-------KHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127 ++ S I K+N++ + D V+ + V +D +PE Sbjct: 89 FVGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNVAQVFVDTVGLPE 148 Query: 128 DL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSH 176 + K D++ ++AASI AKV RD+ ++ +K D D Sbjct: 149 TYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWKFVEKLQDLDTDYG 208 Query: 177 VGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207 GYP K + +++ G R ++R +++ Sbjct: 209 SGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSI 245 >gi|38455391|ref|NP_006388.2| ribonuclease H2 subunit A [Homo sapiens] gi|20981704|sp|O75792|RNH2A_HUMAN RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=Aicardi-Goutieres syndrome 4 protein; Short=AGS4; AltName: Full=RNase H(35); AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|15079910|gb|AAH11748.1| Ribonuclease H2, subunit A [Homo sapiens] gi|119604719|gb|EAW84313.1| ribonuclease H2, large subunit [Homo sapiens] gi|189067523|dbj|BAG37728.1| unnamed protein product [Homo sapiens] Length = 299 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 50/212 (23%), Positives = 83/212 (39%), Gaps = 33/212 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80 V G+DE GRG + GP+V A + + DSK + +RE L+ K+ + Sbjct: 29 CVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDF 88 Query: 81 ISIS--SASHQYID-------KHNIHKATLD---AIYHAVENLQVIPRSALIDGRSIPED 128 + + S I K+N++ + D + + V +D +PE Sbjct: 89 VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPET 148 Query: 129 L---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177 + K D++ ++AASI AKV RD+ ++ +K D D Sbjct: 149 YQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGS 208 Query: 178 GYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203 GYP K + +KE G R ++R Sbjct: 209 GYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRT 240 >gi|20093626|ref|NP_613473.1| ribonuclease HII [Methanopyrus kandleri AV19] gi|74561281|sp|Q8TYV5|RNH2_METKA RecName: Full=Ribonuclease HII; Short=RNase HII gi|19886492|gb|AAM01403.1| Ribonuclease HII [Methanopyrus kandleri AV19] Length = 210 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 18/172 (10%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT--SSAI 80 M V GIDE GRG + GP+VVA ++ + G DSK+++ R L + Sbjct: 1 MSGVMGIDEAGRGPVFGPMVVAGVLAPKRELGLGARDSKELTRSARRRLIRALMSDERLR 60 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID--GRSIPEDL--------P 130 + + ID+ + KA +AI V + +P ++D G PE L Sbjct: 61 VDLRIVWPWEIDEEGVAKAEFEAIRELVR--RAMPDEVILDKPGNYSPERLRRELDLPEG 118 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 A + D+ ++AASI+AK RD ++R+ +Y + G GYP+ Sbjct: 119 INLIAEERADAKYEVVSAASIVAKTYRDWIVRLLELEYGEVG----SGYPSD 166 >gi|268324099|emb|CBH37687.1| ribonuclease HII [uncultured archaeon] gi|268326416|emb|CBH40004.1| ribonuclease HII [uncultured archaeon] Length = 210 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 48/204 (23%), Positives = 85/204 (41%), Gaps = 30/204 (14%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 G+DE GRG + G + VA ++ G+ DSK++S +RE L + I + + + Sbjct: 6 IGVDEAGRGPVIGSMFVAGVLNYDGLEELGVKDSKRLSASRREHLAKIIEDATEVHVVEM 65 Query: 87 SHQYIDK----HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC----------- 131 + IDK ++K T++ + + Q P A +D + + Sbjct: 66 TASEIDKAREERTLNKITVELFSEVINHFQ--PARAFVDAADVKPERFAANLRSNYKRVG 123 Query: 132 --QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVI 188 + + K D ++AASI+AKV RDR +R+ + G + GYP K Q + Sbjct: 124 ELEIISEWKADDHYPVVSAASIVAKVHRDRSIRVLEA---EIGAEIGSGYPADPKTIQFL 180 Query: 189 KEK-------GPSCIHRLTFRPLR 205 K R +++ + Sbjct: 181 KGLLKGKELDNIPAYVRRSWKTVH 204 >gi|320168268|gb|EFW45167.1| ribonuclease H2 [Capsaspora owczarzaki ATCC 30864] Length = 385 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 55/217 (25%), Positives = 88/217 (40%), Gaps = 35/217 (16%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI--- 80 GIDE GRG + GP+V ++ P G +DSKK+ R L++ I + Sbjct: 113 GIDEAGRGPVLGPMVYGISYCPLSDDPRLRQMGFDDSKKLDEPTRRRLFDDINKANDFMG 172 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR----------------- 123 S+ S Q I + +A + + + + + AL DG Sbjct: 173 FSVCVISPQDISSSMLRRAKYNLNALSHDTAMSLVQRALDDGVNIAKVFVDTVGTAETYQ 232 Query: 124 -SIPEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD---YGFDSHVG 178 + E P F V K DS+ ++AASI AKV RD ++ I P G D G Sbjct: 233 EKLSERFPGIEFKVSAKADSLFPIVSAASICAKVVRDHVLDIWQFSEPHGSTIGRDFGCG 292 Query: 179 YPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNLSV 209 YP+ +Q ++ G + R ++ +N+ + Sbjct: 293 YPSDPVTKQWLQTNMDSVFGFPGVVRFSWGTCKNILI 329 >gi|198428317|ref|XP_002127465.1| PREDICTED: similar to ribonuclease H2, large subunit [Ciona intestinalis] Length = 292 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 51/213 (23%), Positives = 81/213 (38%), Gaps = 33/213 (15%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYE---------- 73 GIDE GRG + GP+V A+ + G +DSK + ++RE L+E Sbjct: 32 GIDEAGRGPVLGPMVYASCFTPISCKDKLAGLGCDDSKVLKEEQRESLFETLNKASEYIG 91 Query: 74 ---KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 I S A IS S + ++I T + + L V +D P+ Sbjct: 92 WMIHILSPAYISTSMLGRSKYNLNSISHDTAIDLIRSALKLGVEVTEVYVDTVGPPQTYA 151 Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAH-KKYPDYGFDSHVGYP 180 + + K DS ++AASI AKV RD+ ++ ++ PD GYP Sbjct: 152 EKLKKIFPSIKFTVEKKADSKYPVVSAASICAKVCRDKAVKEWRFRENPDTDTKYGSGYP 211 Query: 181 T-AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207 + ++ G R ++ L Sbjct: 212 ADPVTKVWLRNNVDRIFGFPSFVRFSWSTTSKL 244 >gi|315364763|pdb|3PUF|A Chain A, Crystal Structure Of Human Rnase H2 Complex gi|315364766|pdb|3PUF|D Chain D, Crystal Structure Of Human Rnase H2 Complex gi|315364769|pdb|3PUF|G Chain G, Crystal Structure Of Human Rnase H2 Complex gi|315364772|pdb|3PUF|J Chain J, Crystal Structure Of Human Rnase H2 Complex gi|315364775|pdb|3PUF|M Chain M, Crystal Structure Of Human Rnase H2 Complex gi|315364778|pdb|3PUF|P Chain P, Crystal Structure Of Human Rnase H2 Complex Length = 302 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 50/212 (23%), Positives = 83/212 (39%), Gaps = 33/212 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80 V G+DE GRG + GP+V A + + DSK + +RE L+ K+ + Sbjct: 32 CVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDF 91 Query: 81 ISIS--SASHQYID-------KHNIHKATLD---AIYHAVENLQVIPRSALIDGRSIPED 128 + + S I K+N++ + D + + V +D +PE Sbjct: 92 VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPET 151 Query: 129 L---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177 + K D++ ++AASI AKV RD+ ++ +K D D Sbjct: 152 YQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGS 211 Query: 178 GYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203 GYP K + +KE G R ++R Sbjct: 212 GYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRT 243 >gi|308509890|ref|XP_003117128.1| CRE-RNH-2 protein [Caenorhabditis remanei] gi|308242042|gb|EFO85994.1| CRE-RNH-2 protein [Caenorhabditis remanei] Length = 323 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 101/224 (45%), Gaps = 42/224 (18%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAII--LDPNNI--PFGINDSKKISHKKREELY--- 72 + V GIDE GRG + GP+V AA I LD N G++DSK ++ KREE++ Sbjct: 43 ADGVPCVLGIDEAGRGPVLGPMVYAAAISPLDQNTELKNLGVDDSKALNEAKREEIFDKM 102 Query: 73 ---EKITSSAIISISSASHQYI-------DKHNIHKATLDAIYHAVE-----NLQVIPRS 117 E+I +I S S + I K+++++ + DA ++ N+ V+ Sbjct: 103 NNDEEIQQVVAYAIRSLSPELISASMLKRHKYSLNEVSHDAAIALIKDAFACNVNVVEIK 162 Query: 118 ALIDG------RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAH----- 165 G + + P + V K DS+ ++AASI AKVTRD +R Sbjct: 163 VDTVGPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDTRLRNWQFKEKG 222 Query: 166 KKYPDYGFDSHVGYP----TAKHQQVIKE--KGPSCIHRLTFRP 203 + P+ G+ GYP T K Q+ + G + R +++ Sbjct: 223 IRIPENGY--GSGYPGDPNTKKFLQLSVDPIFGFCSLVRASWKT 264 >gi|61557385|ref|NP_001013252.1| ribonuclease H2 subunit A [Rattus norvegicus] gi|81889649|sp|Q5U209|RNH2A_RAT RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|55562777|gb|AAH86345.1| Rnaseh2a protein [Rattus norvegicus] gi|55824706|gb|AAH86539.1| Ribonuclease H2, subunit A [Rattus norvegicus] gi|149037817|gb|EDL92177.1| ribonuclease H2, large subunit, isoform CRA_a [Rattus norvegicus] gi|149037820|gb|EDL92180.1| ribonuclease H2, large subunit, isoform CRA_a [Rattus norvegicus] Length = 301 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 80/213 (37%), Gaps = 34/213 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS--- 77 V G+DE GRG + GP+V A + + DSK ++ +RE L+ K+ Sbjct: 29 CVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGD 88 Query: 78 ---SA-------IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A +IS S + +++ T + + V +D +PE Sbjct: 89 FVGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQVFVDTVGMPE 148 Query: 128 DL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSH 176 + K DS+ ++AASIIAKV RD+ ++ + D Sbjct: 149 TYQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQFVESLQGLDSDYG 208 Query: 177 VGYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203 GYP K + +++ G R ++ Sbjct: 209 SGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWST 241 >gi|49115760|gb|AAH73515.1| LOC443655 protein [Xenopus laevis] Length = 305 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 55/244 (22%), Positives = 89/244 (36%), Gaps = 47/244 (19%) Query: 7 PERPHFE-LEAM-----VREKNMWPVA-------GIDEVGRGALAGPVVVAAIILD---- 49 P RP E E + + + GIDE GRG + GP+V Sbjct: 1 PTRPELEEFERNNSQSRLLSSPVPQICRTEDCCLGIDEAGRGPVLGPMVYGICYCPVARK 60 Query: 50 PNNIPFGINDSKKISHKKREELYEKITSSAIIS----------ISSASHQYIDKHNIHKA 99 + + DSK +S RE L+EK+ S+ I S S Q K+N++ Sbjct: 61 KDLQDSKVADSKTLSEADRERLFEKLNGSSDYIGWALHILSPNIISTSMQQRAKYNLNAL 120 Query: 100 TLDAIYHAVE---NLQVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIA 147 + D ++ + V +D E + + K DS+ ++ Sbjct: 121 SHDTAIGLIQFALDAGVQLTEVFVDTVGPAEKYQEKLKKIFPELDVTVRPKADSLFPVVS 180 Query: 148 AASIIAKVTRDRLMRIAH--KKYPDYGFDSHVGYPT-AKHQQVIKEK-----GPSCIHRL 199 AASI AKV RDR+++ + + D GYP K ++ + G R Sbjct: 181 AASICAKVARDRVVKDWKFVEDLGELDADYGSGYPNDPKTKEWLSRHLDPVFGYPQFVRF 240 Query: 200 TFRP 203 ++ Sbjct: 241 SWST 244 >gi|73986851|ref|XP_542041.2| PREDICTED: similar to Ribonuclease HI large subunit (RNase HI large subunit) (RNase H(35)) (Ribonuclease H2) (RNase H2) [Canis familiaris] Length = 299 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 49/217 (22%), Positives = 87/217 (40%), Gaps = 34/217 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS--- 77 V G+DE GRG + GP+V A + + + DSK +S +R+ L+ K+ Sbjct: 29 CVLGVDEAGRGPVLGPMVYAICYCPLSRLGDLEALKVADSKTLSESERDRLFVKMEKDRD 88 Query: 78 ---SA-------IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A +IS S + +++ T + + V +D +PE Sbjct: 89 FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGLPE 148 Query: 128 DL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSH 176 + K D++ ++AASI AKV RD+ ++ H +K D D Sbjct: 149 TYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKSWHFVEKLQDLDADYG 208 Query: 177 VGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207 GYP K + +++ G R ++R +++ Sbjct: 209 SGYPNDPKTKAWLRKHVEPVFGFPQFVRFSWRTAQSI 245 >gi|219111921|ref|XP_002177712.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217410597|gb|EEC50526.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 393 Score = 121 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 60/221 (27%), Positives = 96/221 (43%), Gaps = 42/221 (19%) Query: 24 WPVAGIDEVGRGALAGPVVVAAII---LDPNNIPFGINDSKKISHKKREELYEKIT---- 76 V GIDE GRG++ GP+V A D + IP NDSK++S KR L KI Sbjct: 111 GVVVGIDEAGRGSILGPMVYGAAFWNPCDEDRIPNDFNDSKQLSEDKRAMLLHKIMYDTP 170 Query: 77 ----SSAIISISSASHQYI--DKHNIHKATLDAIYHAVENL---QVIPRSALIDG----- 122 + ++ S S + + +N+++ + DA +E+L V + ID Sbjct: 171 EMGFAVRVLHASEISRNMLRTESYNLNQMSHDAAAGIIEHLLEAGVQIGACFIDTVGNAD 230 Query: 123 ---RSIPEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAH------KKYPDYG 172 R + ++ P F V K D+ +A S++AK RDR+M K+ P +G Sbjct: 231 HYKRRLQQEFPGIDFTVESKADAKYPPCSAGSVVAKNVRDRMMESFQYSEMSLKRDPKFG 290 Query: 173 FDSHVGYPTA-------KHQQVIKEKGPSCIHRLTFRPLRN 206 GYP+ ++ Q K G + R ++ P + Sbjct: 291 ----SGYPSDPVCKDWMENNQNCKVFGYPDVVRFSWNPAKK 327 >gi|118575753|ref|YP_875496.1| ribonuclease HII [Cenarchaeum symbiosum A] gi|189043576|sp|A0RV25|RNH2_CENSY RecName: Full=Ribonuclease HII; Short=RNase HII gi|118194274|gb|ABK77192.1| ribonuclease HII [Cenarchaeum symbiosum A] Length = 205 Score = 121 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 84/204 (41%), Gaps = 27/204 (13%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA 79 V G+DE GRG+L GP+V+A + + N G+ DSKK++ K RE LY +I + A Sbjct: 1 MLVCGVDEAGRGSLVGPLVIAGVAIKRNRMRELKSMGVRDSKKLTRKARESLYPEIVNMA 60 Query: 80 I-ISISSASHQYID----KHNIHKATLDAIYHAVENLQVIPRSAL-IDGR------SIPE 127 IS +D +H ++ + + L D + E Sbjct: 61 DSYHISRVPPGVVDRSVGRHMLNDLEARYMARVITRLGHGTTYVDSCDVNPRRFGGRVSE 120 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + + D + ++AASI+AKV RDR + K + D GYP+ + Sbjct: 121 MSGRTVRSYHRADDRFVIVSAASILAKVARDRSIERLRKSH-----DVGSGYPSDRRTVG 175 Query: 188 I-----KEKGP-SCIHRLTFRPLR 205 + G R ++RP R Sbjct: 176 FVRGYYNKNGAMPPFVRRSWRPAR 199 >gi|301171214|ref|NP_001180335.1| ribonuclease H2, subunit A [Xenopus laevis] gi|71051192|gb|AAH99334.1| Unknown (protein for MGC:116529) [Xenopus laevis] Length = 302 Score = 121 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 49/210 (23%), Positives = 81/210 (38%), Gaps = 34/210 (16%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG + GP+V + + DSK +S RE L+EK+ S+ Sbjct: 32 GIDEAGRGPVLGPMVYGICYCPVARKKDLQDSKVADSKTLSEADRERLFEKLNGSSDYIG 91 Query: 83 ---------ISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPEDLP 130 + S S Q K+N++ + D ++ + V +D E Sbjct: 92 WALHILSPNVISTSMQQRAKYNLNALSHDTAIGLIQFALDAGVQLTEVFVDTVGPAEKYQ 151 Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHVGY 179 + + K DS+ ++AASI AKV RDR+++ + + D GY Sbjct: 152 EKLKKIFPELDVTVRPKADSLFPVVSAASICAKVARDRVVKDWKFVEDLGELDADYGSGY 211 Query: 180 PT-AKHQQVIKEK-----GPSCIHRLTFRP 203 P K ++ + G R ++ Sbjct: 212 PNDPKTKEWLSRHLDPVFGYPQFVRFSWST 241 >gi|221122753|ref|XP_002163480.1| PREDICTED: similar to ribonuclease H2, large subunit [Hydra magnipapillata] Length = 339 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 55/212 (25%), Positives = 86/212 (40%), Gaps = 32/212 (15%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI--- 80 GIDE GRG + GP+V + + I G DSK ++ +KR+ L I ++ Sbjct: 32 GIDEAGRGPVLGPMVYSVCYCPISMIKKLSDLGFADSKTLTEEKRDNLLSVIENNCDFIG 91 Query: 81 ISISSASHQYIDKHNI--HKATLDAIYH------------AVENLQVIPRSALIDG---- 122 +I S I + +K TL+ I H A N+ + + D Sbjct: 92 WAIKIISPTEISNEMLRRYKVTLNEISHGAAIELTRKTINAGANITEMYVDTVGDASKYQ 151 Query: 123 RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + E + V K D++ ++AASI AKV RDR ++ D D GYP Sbjct: 152 NKLSEVFDGVSVKVTPKADALFPIVSAASICAKVARDRCIQGWQFPEGDIKEDYGSGYPA 211 Query: 182 -AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207 K +Q +K+ G R ++ N+ Sbjct: 212 DPKTKQWLKDVVDPVFGFPQFVRFSWSTCVNI 243 >gi|325974872|gb|ADZ47886.1| ribonuclease H2 subunit A [Capra hircus] Length = 286 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 49/217 (22%), Positives = 87/217 (40%), Gaps = 34/217 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80 V G+DE GRG + GP+V A + + DSK +S +R+ L+ K+ Sbjct: 29 CVLGVDEAGRGPVLGPMVYAICYCPLSRLEDLEALKVADSKTLSESERDRLFAKMEEDGD 88 Query: 81 ---ISISSASHQYID-------KHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127 ++ S I K+N++ + D V+ + V +D +PE Sbjct: 89 FVGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNVAQVFVDTGGLPE 148 Query: 128 DL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSH 176 + K D++ ++AASI AKV RD+ ++ +K D D Sbjct: 149 TYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWKFVEKLQDLDTDYG 208 Query: 177 VGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207 GYP K + +++ G R ++R +++ Sbjct: 209 SGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSI 245 >gi|118355616|ref|XP_001011067.1| ribonuclease HII family protein [Tetrahymena thermophila] gi|89292834|gb|EAR90822.1| ribonuclease HII family protein [Tetrahymena thermophila SB210] Length = 284 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 38/227 (16%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEK 74 ++KN+ V GIDE GRG + GP+V + P G NDSK+++ +KR++LY + Sbjct: 7 KKKNLDWVMGIDEAGRGPVLGPMVYGCCVWPIQYEPELKLEGFNDSKQLTEQKRDQLYAR 66 Query: 75 ITS----SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--- 127 + + S +++ + K + + S + G ++ + Sbjct: 67 MEELKNDKLYFEVRILSAEFLSNRMLAKNRDSLNELSFNAAYSLIDSVMSQGFNVTQVFL 126 Query: 128 -----------------DLPCQAFAVI---KGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 K D+ + AASI AKVTRD + + Sbjct: 127 DTVGKEETYQAKLYQDYKYTYPQLKFTVSSKADAKFPVVGAASICAKVTRDLQITNNDMR 186 Query: 168 YP-DYGFDSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207 P D + GYP+ ++ ++E G R ++ + N+ Sbjct: 187 EPLDLSKATGSGYPSDPNTKKWLQEVFDPVFGFPSNVRYSWSTVDNI 233 >gi|322490611|emb|CBZ25873.1| putative ribonuclease HII [Leishmania mexicana MHOM/GT/2001/U1103] Length = 474 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 43/115 (37%), Positives = 57/115 (49%), Gaps = 9/115 (7%) Query: 100 TLDAIYHAVENLQVIPRSALIDGRSIP---------EDLPCQAFAVIKGDSISLSIAAAS 150 L + + P LIDG ++P + +I+GD SLSIAAAS Sbjct: 350 LLKGATEYFDFEPIQPPLVLIDGHAVPGPSYDYFTSVRIGGDVQPIIEGDKRSLSIAAAS 409 Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 +AKVTRD LM YP YGF + GYP +H + + + G IHR T+RP R Sbjct: 410 CLAKVTRDELMNYIDALYPGYGFRENKGYPVEQHMKYVAKNGLCPIHRKTYRPCR 464 Score = 62.4 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 14/91 (15%) Query: 27 AGIDEVGRGALAGPVVVAAII-------------LDPNNIPFGINDSKKISHKKREELYE 73 G DE GRG LAGPVV AA+ L F I DSK +S ++R+ ++ Sbjct: 136 IGCDEAGRGPLAGPVVGAAVSRIPVSSFNNEFDQLYEAPEQFQIFDSKSVSERQRDLVFA 195 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDA 103 IT I+S + +AT A Sbjct: 196 MITGHVDFFDIASCKKFLVQHCAGDEATSLA 226 >gi|91772495|ref|YP_565187.1| ribonuclease HII [Methanococcoides burtonii DSM 6242] gi|121691891|sp|Q12YN9|RNH2_METBU RecName: Full=Ribonuclease HII; Short=RNase HII gi|91711510|gb|ABE51437.1| Ribonuclease HII [Methanococcoides burtonii DSM 6242] Length = 213 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 33/208 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI- 80 + GIDE G+G + GP+ + + +D + G+ DSKK+S K+R L +I A Sbjct: 3 IIGIDEAGKGPVIGPMCIGGVRIDEDKSNALKNLGVADSKKLSPKRRVHLAAQIKKYADG 62 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIPEDL--------- 129 + S ID+ + D + A ++ ++ D + E+ Sbjct: 63 WFVYEVSPNQIDELRKLMSMNDIMVLAFGSVIEELPSDKIYADAADVKEERFGKRLFDNY 122 Query: 130 --------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 P + + D + ++AASI+AKV RD L+ D G D GYP+ Sbjct: 123 MEKHPDVSPPEVISKHGADDLFPVVSAASILAKVRRDELIEKIKV---DMGVDIGSGYPS 179 Query: 182 AKHQQVIKEKGP------SCIHRLTFRP 203 + E I R +++ Sbjct: 180 DPKTKKFLENWYRENSSFPDIVRHSWKT 207 >gi|45361019|ref|NP_989146.1| ribonuclease H2, subunit A [Xenopus (Silurana) tropicalis] gi|38494390|gb|AAH61614.1| ribonuclease H2, large subunit [Xenopus (Silurana) tropicalis] Length = 301 Score = 120 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 83/210 (39%), Gaps = 34/210 (16%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG + GP+V + + DSK +S +RE L+EK+ S++ Sbjct: 32 GIDEAGRGPVLGPMVYGICYCPVARKKDLQDLKVADSKTLSEAERERLFEKLNSTSDYIG 91 Query: 83 ---------ISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPEDLP 130 I S S Q K+N++ + D ++ + V + +D E Sbjct: 92 WALHILSPNIISTSMQQRAKYNLNALSHDTAIGLIQFALDAGVQLKEVFLDTVGPAEKYQ 151 Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHVGY 179 + + K DS+ ++AASI AKV RDR+++ + D + GY Sbjct: 152 DKLKKIFPELDVTVRPKADSLFPVVSAASICAKVARDRVVKEWKFVEDLGDPDAEYGSGY 211 Query: 180 PT-AKHQQVIKEK-----GPSCIHRLTFRP 203 P K + + G R ++ Sbjct: 212 PNDPKTKDWLSRHLDPVFGYPQFVRFSWST 241 >gi|154345460|ref|XP_001568667.1| ribonuclease HII [Leishmania braziliensis MHOM/BR/75/M2904] gi|134066009|emb|CAM43794.1| putative ribonuclease HII [Leishmania braziliensis MHOM/BR/75/M2904] Length = 474 Score = 120 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 42/103 (40%), Positives = 55/103 (53%), Gaps = 9/103 (8%) Query: 112 QVIPRSALIDGRSIP---------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162 + P LIDG ++P + +I+GD SLSIAAAS +AKVTRD LM Sbjct: 362 PIQPPLVLIDGHAVPGPSYDYFTSVSIGGDVQPIIEGDKRSLSIAAASCLAKVTRDELMN 421 Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 YP YGF + GYP +H + + + G IHR T+RP R Sbjct: 422 YIGALYPGYGFGENKGYPVEQHMKYVAKNGLCPIHRKTYRPCR 464 Score = 61.2 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 13/68 (19%) Query: 27 AGIDEVGRGALAGPVVVAAII-------------LDPNNIPFGINDSKKISHKKREELYE 73 G DE GRG LAGPVV AA+ L F I DSK +S ++R+ ++ Sbjct: 136 IGCDEAGRGPLAGPVVGAAVSRIPVSSFNNEFDQLYEAPEQFQIFDSKSVSERQRDLVFA 195 Query: 74 KITSSAII 81 IT Sbjct: 196 MITGHVDF 203 >gi|1694784|emb|CAA60867.1| rnhB [Haemophilus influenzae] Length = 97 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 43/92 (46%), Positives = 60/92 (65%), Gaps = 1/92 (1%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I A+ Sbjct: 6 QGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEKAL 65 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENL 111 ++ A ID+ NI +A+L A+ AV++L Sbjct: 66 AWALGRAEADEIDEINILQASLLAMTRAVKSL 97 >gi|328849346|gb|EGF98528.1| hypothetical protein MELLADRAFT_46031 [Melampsora larici-populina 98AG31] Length = 279 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 88/231 (38%), Gaps = 50/231 (21%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA--- 79 GIDE GRG + GP+V AA + G DSK ++H+KR L+E I S+ Sbjct: 1 MGIDEAGRGPVLGPMVYAASFCPVDFSEELKSLGFADSKTLTHQKRCNLFESIVQSSGKI 60 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVE----------NLQVIPRSALIDGRSIPED- 128 ++ S I ++ + A + + Q I + +D P+ Sbjct: 61 QWNVKVMSPSDISMGMSRRSPYNLNAQAFDATVQIIQAALDHQYILQHIYVDTLGPPKTH 120 Query: 129 -------LPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIA---------HKKYPD- 170 P F V K DSI ++AASI+AKVTRD ++ K+ + Sbjct: 121 QLNLQKAFPNLHFTVCSKADSIYPIVSAASIVAKVTRDAIVENWMFVELSIGKRKRLEES 180 Query: 171 --------YGFDSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207 + + GYP +K G + R ++ ++ L Sbjct: 181 QDDDDDSIWNLPTGSGYPADPNTTAWLKSHFDKVFGYPQLARFSWATVKTL 231 >gi|146103491|ref|XP_001469573.1| ribonuclease HII [Leishmania infantum] gi|134073943|emb|CAM72682.1| putative ribonuclease HII [Leishmania infantum JPCM5] gi|322503389|emb|CBZ38474.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 474 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 43/115 (37%), Positives = 57/115 (49%), Gaps = 9/115 (7%) Query: 100 TLDAIYHAVENLQVIPRSALIDGRSIP---------EDLPCQAFAVIKGDSISLSIAAAS 150 L + + P LIDG ++P + +I+GD SLSIAAAS Sbjct: 350 LLKGATEYFDFEPIQPPLVLIDGHAVPGPSYDYFTSVRIGGDVQPIIEGDKRSLSIAAAS 409 Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 +AKVTRD LM YP YGF + GYP +H + + + G IHR T+RP R Sbjct: 410 CLAKVTRDELMNYIDALYPGYGFRENKGYPVEQHMKYVAKNGLCPIHRKTYRPCR 464 Score = 63.2 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 14/91 (15%) Query: 27 AGIDEVGRGALAGPVVVAAII-------------LDPNNIPFGINDSKKISHKKREELYE 73 G DE GRG LAGPVV AA+ L F I DSK +S ++R+ ++ Sbjct: 136 IGCDEAGRGPLAGPVVGAAVSRIPVSSFNNEFDQLYEAPEQFQIFDSKSVSERQRDLVFA 195 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDA 103 IT I+S + +AT A Sbjct: 196 MITGHVDFFDIASCKKFVVHHCAGDEATSLA 226 >gi|294464821|gb|ADE77916.1| unknown [Picea sitchensis] Length = 293 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 33/212 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI 80 + GIDE GRG + GP+V + + DSK + +KREEL+E + + A Sbjct: 14 CIMGIDEAGRGPVLGPMVYGCLYCSASYQETLATLKFADSKTLKEEKREELFESLKADAS 73 Query: 81 --ISISSASHQYID-------KHNIHKATLDAIYHAVENL---QVIPRSALIDGR----- 123 ++ + + K N++ + DA V + ++ +D Sbjct: 74 LGWAVDIIDPRELSAKMLQRIKVNLNTISHDAAMGLVNTVLSKGILLSEVYVDTVGDADK 133 Query: 124 ---SIPEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMR--IAHKKYPDYGFDSHV 177 + E P F V K DS+ ++ ASI+AKVTRD +R + + + Sbjct: 134 YRIKLEEKFPGIKFVVSKKADSLYPIVSGASIVAKVTRDNALRGWVLDETAEGISRNFGS 193 Query: 178 GYP-TAKHQQVIKE-----KGPSCIHRLTFRP 203 GYP + + ++E G + R ++ Sbjct: 194 GYPGDPETKAWLEENKHPVFGFPTLVRFSWAT 225 >gi|55648379|ref|XP_512415.1| PREDICTED: ribonuclease H2 subunit A isoform 2 [Pan troglodytes] Length = 299 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 50/212 (23%), Positives = 83/212 (39%), Gaps = 33/212 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80 V G+DE GRG + GP+V A + + DSK + +RE L+ K+ + Sbjct: 29 CVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLLESERERLFAKMEDTDF 88 Query: 81 ISIS--SASHQYID-------KHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPED 128 + + S I K+N++ + D ++ V +D +PE Sbjct: 89 VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALYQGVNVTQVFVDTVGMPET 148 Query: 129 L---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177 + K D++ ++AASI AKV RD+ ++ +K D D Sbjct: 149 YQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDSDTDYGS 208 Query: 178 GYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203 GYP K + +KE G R ++R Sbjct: 209 GYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRT 240 >gi|157876514|ref|XP_001686603.1| ribonuclease HII [Leishmania major strain Friedlin] gi|16930798|gb|AAL32059.1|AF441859_1 ribonuclease HIIC [Leishmania major] gi|68129678|emb|CAJ08984.1| putative ribonuclease HII [Leishmania major strain Friedlin] Length = 474 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 43/115 (37%), Positives = 57/115 (49%), Gaps = 9/115 (7%) Query: 100 TLDAIYHAVENLQVIPRSALIDGRSIP---------EDLPCQAFAVIKGDSISLSIAAAS 150 L + + P LIDG ++P + +I+GD SLSIAAAS Sbjct: 350 LLKGATEYFDFEPIQPPLVLIDGHAVPGPSYDYFTSVRIGGDVQPIIEGDKRSLSIAAAS 409 Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 +AKVTRD LM YP YGF + GYP +H + + + G IHR T+RP R Sbjct: 410 CLAKVTRDELMNYIDALYPGYGFRDNKGYPVEQHMKYVAKNGLCPIHRKTYRPCR 464 Score = 62.0 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 14/88 (15%) Query: 27 AGIDEVGRGALAGPVVVAAII-------------LDPNNIPFGINDSKKISHKKREELYE 73 G DE GRG LAGPVV AA+ L F I DSK +S ++R+ ++ Sbjct: 136 IGCDEAGRGPLAGPVVGAAVSRIPVSSFNNEFDQLYEAPEQFQIFDSKSVSERQRDLVFA 195 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKAT 100 IT I+S + +AT Sbjct: 196 MITGHVDFFDIASCKKFVVHHCAGDEAT 223 >gi|268559996|ref|XP_002637939.1| C. briggsae CBR-RNH-2 protein [Caenorhabditis briggsae] gi|187035517|emb|CAP25398.1| CBR-RNH-2 protein [Caenorhabditis briggsae AF16] Length = 297 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 93/223 (41%), Gaps = 44/223 (19%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELY----- 72 + V GIDE GRG + GP+V AA I + G++DSK ++ KREE++ Sbjct: 19 GVPCVLGIDEAGRGPVLGPMVYAAAISPMDQNAELKALGVDDSKALNEAKREEIFEKINN 78 Query: 73 -EKITSSAIISISSASHQYI-------DKHNIHKATLDAI---YHAVENLQVIPRSALID 121 E+I +I S S + I K+++++ + DA V +D Sbjct: 79 DEEIQQIVAYAIRSLSPELISSSMLKRHKYSLNEVSHDAAIALIRDAFACNVNVVEIKVD 138 Query: 122 GR--------SIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKY---- 168 + P + V K DS+ ++AASI AKVTRD +R K Sbjct: 139 TVGPKATYQAKLERLFPGISICVTEKADSLFPIVSAASIAAKVTRDTRLRNWEFKEENIK 198 Query: 169 -PDYGFDSHVGYP----TAKHQQVIKEK---GPSCIHRLTFRP 203 P+ GF GYP T K Q + G + R +++ Sbjct: 199 VPENGF--GSGYPGDPNTKKFLQ-LSVHPIFGFCSLVRASWKT 238 >gi|58037175|ref|NP_081463.1| ribonuclease H2 subunit A [Mus musculus] gi|85541053|sp|Q9CWY8|RNH2A_MOUSE RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|312208159|pdb|3P5J|A Chain A, The Structure Of The Human Rnase H2 Complex Defines Key Interaction Interfaces Relevant To Enzyme Function And Human Disease gi|23273263|gb|AAH38158.1| Ribonuclease H2, large subunit [Mus musculus] gi|74138850|dbj|BAE27230.1| unnamed protein product [Mus musculus] Length = 301 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 80/213 (37%), Gaps = 34/213 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS--- 77 V G+DE GRG + GP+V A + + DSK ++ +RE L+ K+ Sbjct: 29 CVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGD 88 Query: 78 ---SA-------IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A +IS S + +++ T + + V +D +PE Sbjct: 89 FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPE 148 Query: 128 DL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSH 176 + K DS+ ++AASI AKV RD+ ++ + D D Sbjct: 149 TYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYG 208 Query: 177 VGYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203 GYP K + +++ G R ++ Sbjct: 209 SGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWST 241 >gi|42601730|gb|AAS21614.1| ribonuclease HII [Leishmania panamensis] Length = 267 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 42/103 (40%), Positives = 55/103 (53%), Gaps = 9/103 (8%) Query: 112 QVIPRSALIDGRSIP---------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162 + P LIDG ++P + +I+GD SLSIAAAS +AKVTRD LM Sbjct: 155 PIQPPLVLIDGHAVPGPSYDYFTSVSIGGDVQPIIEGDKRSLSIAAASCLAKVTRDELMN 214 Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 YP YGF + GYP +H + + + G IHR T+RP R Sbjct: 215 YIGALYPGYGFGENKGYPVEQHMKYVAKNGLCPIHRKTYRPCR 257 >gi|116284049|gb|AAH29252.1| Rnaseh2a protein [Mus musculus] Length = 254 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 80/213 (37%), Gaps = 34/213 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS--- 77 V G+DE GRG + GP+V A + + DSK ++ +RE L+ K+ Sbjct: 29 CVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGD 88 Query: 78 ---SA-------IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A +IS S + +++ T + + V +D +PE Sbjct: 89 FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPE 148 Query: 128 DL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSH 176 + K DS+ ++AASI AKV RD+ ++ + D D Sbjct: 149 TYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYG 208 Query: 177 VGYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203 GYP K + +++ G R ++ Sbjct: 209 SGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWST 241 >gi|89268632|emb|CAJ82403.1| ribonuclease H2, large subunit [Xenopus (Silurana) tropicalis] Length = 301 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 83/210 (39%), Gaps = 34/210 (16%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG + GP+V + + DSK +S +RE L+EK+ S++ Sbjct: 32 GIDEAGRGPVLGPMVYGICYCPVARKKDLQDLKVADSKTLSEAERERLFEKLNSTSDYIG 91 Query: 83 ---------ISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPEDLP 130 I S S Q K+N++ + D ++ + V + +D E Sbjct: 92 WALHILSPNIISTSMQQRAKYNLNALSHDTAIGLIQFALDAGVQLKEVFLDTVGPAEKYQ 151 Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHVGY 179 + + K DS+ ++AASI AKV RDR+++ + D + GY Sbjct: 152 DKLKKIFPELDVTVRPKADSLFPVVSAASICAKVARDRVVKDWKFVEDLGDPDAEYGSGY 211 Query: 180 PT-AKHQQVIKEK-----GPSCIHRLTFRP 203 P K + + G R ++ Sbjct: 212 PNDPKTKDWLSRHLDPVFGYPQFVRFSWST 241 >gi|193709059|ref|XP_001946925.1| PREDICTED: ribonuclease H2 subunit A-like [Acyrthosiphon pisum] Length = 312 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 97/237 (40%), Gaps = 39/237 (16%) Query: 3 CNSIPERPHFEL-EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGI 57 NS R +L E+ EK + GIDE GRG + GP+V +N G Sbjct: 22 NNSFDVRIESDLPESTTTEK---CILGIDEAGRGPVLGPMVYGTSYCSVDNQAILKTLGC 78 Query: 58 NDSKKISHKKREELYEKITSSAI---ISISSASHQYI-------DKHNIHKATLDAI--- 104 DSK +S + R+++++ IT + ++ S I K ++++ + +A Sbjct: 79 ADSKVLSEQARDDIFDGITKQSEILGWAVHIISPTTISNCSFRRQKCSLNEISHNAAIGL 138 Query: 105 YHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKV 155 V + V +D PE + ++ K DS+ ++AASI AKV Sbjct: 139 IQRVLDRGVNICEVFVDTVGPPEKYQEKLLSIFPQLKITVSKKADSLFPIVSAASICAKV 198 Query: 156 TRDRLMRIAHKKY-PDYGFDSH--VGYPT-AKHQQVIKE-----KGPSCIHRLTFRP 203 TRD ++ P DS+ GYP ++ +K+ G I R ++ Sbjct: 199 TRDAALKNWKFIERPGEDIDSNWGSGYPNDPVTKEYLKKNIDPVFGFPSIVRFSWST 255 >gi|145590574|ref|YP_001152576.1| ribonuclease HII [Pyrobaculum arsenaticum DSM 13514] gi|189043645|sp|A4WHQ7|RNH2_PYRAR RecName: Full=Ribonuclease HII; Short=RNase HII gi|145282342|gb|ABP49924.1| RNase HII [Pyrobaculum arsenaticum DSM 13514] Length = 198 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 20/197 (10%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAI-ISI 83 V GIDE GRG + GP+V+A ++ D + G+ DSK +S + RE LY KI A+ ++ Sbjct: 5 VGGIDEAGRGPVVGPLVLAIVVGDSEALSKIGVRDSKSLSPRAREVLYGKILEMAVCVNY 64 Query: 84 SSASHQYIDKHNIH-KATLDAIYHAVENLQVIPRSAL------IDGRSIPEDLPC----Q 132 + ID H + +A + +++ P + + L + Sbjct: 65 AVVEPYEIDLHVSRGMLNALEMKYAAKLMELCPADLYYVDSPDVKAARFGDGLSFLTGRR 124 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++ KG+++ +AAASI+AKV RDRL+ + K+ D+G GYP+ + + G Sbjct: 125 VVSLHKGEAV-PQVAAASIVAKVVRDRLVEMLRKEVGDFG----SGYPSDRKTREWLRGG 179 Query: 193 PSCI--HRLTFRPLRNL 207 R ++ + L Sbjct: 180 RIPHECVRWSWETVGKL 196 >gi|17536263|ref|NP_495796.1| RNase H family member (rnh-2) [Caenorhabditis elegans] gi|11387113|sp|Q9U6P6|RNH2A_CAEEL RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=RNase H(35); AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|6010657|gb|AAF01208.1|AF181619_1 putative ribonuclease H2 large subunit [Caenorhabditis elegans] gi|15718212|emb|CAC70103.1| C. elegans protein T13H5.7, confirmed by transcript evidence [Caenorhabditis elegans] Length = 297 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 96/224 (42%), Gaps = 46/224 (20%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELY----- 72 + V GIDE GRG + GP+V AA I + G++DSK ++ KREE++ Sbjct: 19 GIPCVLGIDEAGRGPVLGPMVYAAAISPLDQNVELKNLGVDDSKALNEAKREEIFNKMNE 78 Query: 73 ----EKITSSA-------IISISSASHQYIDKHNI-HKATLDAIYHAVE-NLQVIPRSAL 119 ++I + A +IS S Q + + H+A + I A+ N+ V+ Sbjct: 79 DEDIQQIIAYALRCLSPELISCSMLKRQKYSLNEVSHEAAITLIRDALACNVNVVEIKVD 138 Query: 120 IDG------RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKY---- 168 G + + P + V K DS+ ++AASI AKVTRD +R + Sbjct: 139 TVGPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDSRLRNWQFREKNIK 198 Query: 169 ---PDYGFDSHVGYP----TAKHQQVIKE--KGPSCIHRLTFRP 203 YG GYP T K Q+ E G + R +++ Sbjct: 199 VPDAGYG----SGYPGDPNTKKFLQLSVEPVFGFCSLVRSSWKT 238 >gi|12845627|dbj|BAB26828.1| unnamed protein product [Mus musculus] Length = 301 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 80/213 (37%), Gaps = 34/213 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS--- 77 V G+DE GRG + GP+V A + + DSK ++ +RE L+ K+ Sbjct: 29 CVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGD 88 Query: 78 ---SA-------IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A +IS S + +++ T + + V +D +PE Sbjct: 89 FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDRNVNVTQVFVDTVGMPE 148 Query: 128 DL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSH 176 + K DS+ ++AASI AKV RD+ ++ + D D Sbjct: 149 TYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYG 208 Query: 177 VGYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203 GYP K + +++ G R ++ Sbjct: 209 SGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWST 241 >gi|18042143|gb|AAL57850.1|AF454825_1 ribonuclease HII [Leishmania donovani] Length = 474 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 43/115 (37%), Positives = 57/115 (49%), Gaps = 9/115 (7%) Query: 100 TLDAIYHAVENLQVIPRSALIDGRSIP---------EDLPCQAFAVIKGDSISLSIAAAS 150 L + + P LIDG ++P + +I+GD SLSIAAAS Sbjct: 350 LLKGATEYFDFEPIQPPLVLIDGHAVPGPSYDYFTSVRIGGDVQPIIEGDKRSLSIAAAS 409 Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 +AKVTRD LM YP YGF + GYP +H + + + G IHR T+RP R Sbjct: 410 CLAKVTRDELMNYIDALYPGYGFRENKGYPVEQHMKYVTKNGLCPIHRKTYRPCR 464 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 14/91 (15%) Query: 27 AGIDEVGRGALAGPVVVAAII-------------LDPNNIPFGINDSKKISHKKREELYE 73 G DE GRG LAGPVV AA+ L F I DSK +S ++R+ ++ Sbjct: 136 IGCDEAGRGPLAGPVVGAAVSRIPVFSFNNEFDQLYEAPEQFQIFDSKSVSERQRDLVFA 195 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDA 103 IT I+S + +AT A Sbjct: 196 MITGHVDFFDIASCKKFVVHHCAGDEATSLA 226 >gi|296108883|ref|YP_003615832.1| ribonuclease HII [Methanocaldococcus infernus ME] gi|295433697|gb|ADG12868.1| ribonuclease HII [Methanocaldococcus infernus ME] Length = 223 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 28/177 (15%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 G+DE GRG + GP+VV A + DSKK+S +KRE+L +++ I I Sbjct: 3 IGVDEAGRGPVIGPLVVCAY---ASEEEIEAEDSKKLSKEKREKLRKELEKKGIFEIVKV 59 Query: 87 SHQYIDKH----NIHKATLDAIYHAVENL----QVIPRSALIDGRSIPEDLPCQ------ 132 S + +++ N+++ ++ A++NL + +D S + + Sbjct: 60 SAEELNRLMKSKNLNEIEVELFAKAIKNLIEKHNLKDVEIYVDSCSPNREKFKRKLLSKL 119 Query: 133 -------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 K D ++AASIIAK RDR + K Y D+G GYP+ Sbjct: 120 RGLSIKDLIVEHKADEKYKVVSAASIIAKTERDREIEELKKIYGDFG----SGYPSD 172 >gi|222480377|ref|YP_002566614.1| ribonuclease HII [Halorubrum lacusprofundi ATCC 49239] gi|222453279|gb|ACM57544.1| ribonuclease HII [Halorubrum lacusprofundi ATCC 49239] Length = 234 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 48/216 (22%), Positives = 82/216 (37%), Gaps = 41/216 (18%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS--AIISISS 85 G+DE G+G + GP+V AA++ DP +P ++DSK+I+ +RE + +I ++ + ++ Sbjct: 4 GVDEAGKGPVLGPMVAAAVLADPVALPADVDDSKRIAPSRRESIDAEIRATDAVAVGVAF 63 Query: 86 ASHQYIDKHNIHKATLDA--IYHAV-------------ENLQVIPRSALIDGRSIPEDLP 130 ID+ + TL AV E ++V+ + L Sbjct: 64 VEPAEIDRPDTDMNTLTVRGQARAVRAALHGVVAVDLDEPIRVVADAGDTSEARFARRLG 123 Query: 131 -----------------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 A D + AAS++AKV RD M YP Y Sbjct: 124 ESVADPDSDTTDTEHPEVDVSAAHGADEDDPMVGAASVVAKVARDERMADIDADYPAYD- 182 Query: 174 DSHVGYPTAK-----HQQVIKEKG-PSCIHRLTFRP 203 GYP+ + + + G R ++ Sbjct: 183 GLGSGYPSDPATRNFLRAYVNDHGNVPGCARRSWAT 218 >gi|297618794|ref|YP_003706899.1| ribonuclease HII [Methanococcus voltae A3] gi|297377771|gb|ADI35926.1| ribonuclease HII [Methanococcus voltae A3] Length = 264 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 86/222 (38%), Gaps = 40/222 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK-------REELYEKITSS 78 V G+DE GRG + GP+V+A ++L +N RE LY++I Sbjct: 19 VVGLDEAGRGPVIGPMVIAGVLLKMDNKENAKTFYDLDLKDSKKLSKKKRETLYKEIQKL 78 Query: 79 AIISISSASHQYID-----------KHNIHKATLDAIYHAVENLQVIPRS----ALIDGR 123 A + + + ID + N + ++ Y + L R ID Sbjct: 79 AKVEKVIITAKEIDAQMNIINLNKIELNGFSSIINKFYKDIYGLDENKRDSGFLTYIDAC 138 Query: 124 SIPE------------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 S E + A K D ++AASIIAKV RD ++ ++KY Sbjct: 139 SSNETSFSNQLKAKLINKNIDLIAEHKADDNYKIVSAASIIAKVNRDNIIDSYNEKYEAL 198 Query: 172 GFDSHVGYPT-AKHQQVIKEKG-----PSCIHRLTFRPLRNL 207 G+ GYP+ K ++ +++ I R ++ + L Sbjct: 199 GYTIGSGYPSDPKTKKFLRQYLEDNKELPDIVRFSWNTTKKL 240 >gi|297825539|ref|XP_002880652.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297326491|gb|EFH56911.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 296 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 48/212 (22%), Positives = 90/212 (42%), Gaps = 33/212 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKIT-SSA 79 + GIDE GRG + GP+V + + DSK + +KREELYE + + Sbjct: 15 CLMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEEKREELYENLKLDKS 74 Query: 80 I-ISISSASHQYI-------DKHNIHKATLD---AIYHAVENLQVIPRSALIDGRSIPED 128 + ++ + + +K N+++ + + + V ++ V+ A +D PE Sbjct: 75 LGWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPEK 134 Query: 129 LPCQ-------AFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--V 177 + V+ K DS+ ++ ASI+AKVTRDR +R + + + Sbjct: 135 YRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALREWLVEETGEDINRNFGS 194 Query: 178 GYP-TAKHQQVIKEK-----GPSCIHRLTFRP 203 GYP + + + + G + R ++ Sbjct: 195 GYPGDPETKAWLVQHKHSVFGFPSLVRFSWGT 226 >gi|109123571|ref|XP_001109423.1| PREDICTED: ribonuclease H2 subunit A isoform 2 [Macaca mulatta] Length = 300 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 50/213 (23%), Positives = 81/213 (38%), Gaps = 34/213 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS--- 77 V G+DE GRG + GP+V A + + DSK + +RE L+ K+ Sbjct: 29 CVLGVDEAGRGPVLGPMVYAICYCPLSHLADLEALKVADSKTLLESERERLFAKMEENRD 88 Query: 78 ---SA-------IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A +IS S + +++ T + + V +D +PE Sbjct: 89 FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPE 148 Query: 128 DL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSH 176 + K D++ ++AASI AKV RD+ ++ +K D D Sbjct: 149 TYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWKFVEKLQDSDTDYG 208 Query: 177 VGYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203 GYP K + +KE G R ++R Sbjct: 209 SGYPNDPKTKVWLKEHVEPVFGFPQFVRFSWRT 241 >gi|323452074|gb|EGB07949.1| hypothetical protein AURANDRAFT_6827 [Aureococcus anophagefferens] Length = 156 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 85/164 (51%), Gaps = 11/164 (6%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI-SHKKREELYEKITSSA--IISIS 84 G+DEVGRG LAGPVV A L P + DSK++ + RE +Y ++ ++ +++ Sbjct: 1 GVDEVGRGCLAGPVVTCACYLPPGAEIDDLTDSKQLATEDLREAVYARLLATPGLRFALA 60 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A +D+ NI +A L A+ A E L G + KGD+ Sbjct: 61 KAEAPVVDELNILQANLQAMRTASEAL---CDRLAAGGER-----GGDLEVLDKGDASVS 112 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 +I+AAS+IAKVTRDR+M YP+Y + S+ P A ++++ Sbjct: 113 AISAASVIAKVTRDRIMNALAGDYPEYDWASNKQRPVAVFREIL 156 >gi|296233041|ref|XP_002761859.1| PREDICTED: ribonuclease H2 subunit A-like [Callithrix jacchus] Length = 278 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 20/195 (10%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSS-- 78 V G+DE GRG + GP+V A + + DSK +S +RE L K+ Sbjct: 29 CVVGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERERLLGKMQEDGN 88 Query: 79 -AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-CQAFAV 136 ++ S I + + +L V+ + + + + + P + Sbjct: 89 FVGWALDVLSPNLISTSMLGRFSLSRKVVFVDTVGMPETY----QKRLQQSFPGIEVTVK 144 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHVGYPT-AKHQQVIKEK-- 191 K D++ ++AASI AKV RD+ ++ +K D D GYP K + +KE Sbjct: 145 AKADALYPVVSAASICAKVARDQAVKNWQFVEKLQDLDTDYGSGYPNDPKTKVWLKEHVE 204 Query: 192 ---GPSCIHRLTFRP 203 G R ++R Sbjct: 205 PVFGFPQFVRFSWRT 219 >gi|116754092|ref|YP_843210.1| ribonuclease HII [Methanosaeta thermophila PT] gi|121694604|sp|A0B796|RNH2_METTP RecName: Full=Ribonuclease HII; Short=RNase HII gi|116665543|gb|ABK14570.1| RNase HII [Methanosaeta thermophila PT] Length = 211 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 29/210 (13%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS 78 M + G+DE G+G + G + VA ++ +I G+ DSK +S +RE + KI S Sbjct: 1 MMLILGVDEAGKGPVIGSMFVAGVVFSEEDIFDLAACGVKDSKLLSPTRRESMERKILSI 60 Query: 79 AIIS-ISSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIP--------- 126 A S + + Q ID + + + + A + ++ A++D + Sbjct: 61 ARESFVLEVTAQQIDDLRMVMSMNEIMVRAHSRVVSRLQADRAILDAADVNAERFAQRVR 120 Query: 127 --EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK- 183 P A D + +AAASIIAKV RDR +R G GYP+ Sbjct: 121 EVSGKPIDILAEHNADRKHIVVAAASIIAKVARDRSIRDLEA---ALGRPLGSGYPSDPA 177 Query: 184 ----HQQVIKEKG--PSCIHRLTFRPLRNL 207 ++ I+E G PS + R ++ + L Sbjct: 178 TVRFLKEWIEENGDLPSFV-RKSWSTAQRL 206 >gi|301771221|ref|XP_002921051.1| PREDICTED: ribonuclease H2 subunit A-like [Ailuropoda melanoleuca] gi|281353030|gb|EFB28614.1| hypothetical protein PANDA_009861 [Ailuropoda melanoleuca] Length = 299 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 34/217 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS--- 77 V G+DE GRG + GP+V A + + DSK +S +R+ L+ K+ Sbjct: 29 CVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFVKMEEDGD 88 Query: 78 ---SA-------IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A +IS S + +++ T + + V +D PE Sbjct: 89 FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGPPE 148 Query: 128 DL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSH 176 + K D++ ++AASI AKV RD+ ++ H + D D Sbjct: 149 TYQERLQERFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWHFVETLQDLDADYG 208 Query: 177 VGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207 GYP K + +++ G R ++R +++ Sbjct: 209 SGYPNDPKTKVWLRKHVEPVFGFPQFVRFSWRTAQSI 245 >gi|327311983|ref|YP_004338880.1| ribonuclease HII [Thermoproteus uzoniensis 768-20] gi|326948462|gb|AEA13568.1| ribonuclease HII [Thermoproteus uzoniensis 768-20] Length = 203 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 24/201 (11%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSA-II 81 VAGIDE GRG + GP+V+A + + + G+ DSK++S K RE LY I SA + Sbjct: 1 MVVAGIDEAGRGPVVGPMVLAIVAGNEKALRALGVRDSKELSRKARERLYPLILKSAECV 60 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC---------- 131 + ID+ L + A + P+ P Sbjct: 61 NYVVLEPHVIDEWAASHKLNLLEAEEAAKLMRLCD-ADVYYVDSPDPKPERFSELLSRMS 119 Query: 132 --QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA-KHQQVI 188 + A+ K + +AAASI+AKV RDRL+ + + D+G GYP+ K + Sbjct: 120 GRRVVAMNKAE-RVPQVAAASIVAKVVRDRLVDMLRSEMGDFG----SGYPSDSKTISAL 174 Query: 189 K--EKGPSCIHRLTFRPLRNL 207 + + CI R ++ L+ L Sbjct: 175 RSGKIAVECI-RHSWGTLKRL 194 >gi|255994295|ref|ZP_05427430.1| ribonuclease HII [Eubacterium saphenum ATCC 49989] gi|255993008|gb|EEU03097.1| ribonuclease HII [Eubacterium saphenum ATCC 49989] Length = 283 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 1/91 (1%) Query: 111 LQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 L + L+D + +D+ ++I+GD S SIAA+SI+AKV RD +M+ A + YP Sbjct: 192 LNKDEITLLVDAVKL-DDVGTPVHSIIRGDEKSYSIAASSIVAKVIRDEMMKKADEMYPG 250 Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 Y F S+ GY T +H + IK G S IHR TF Sbjct: 251 YDFKSNKGYGTKRHYEGIKLYGISDIHRKTF 281 Score = 99.0 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 1/93 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG+DEVGRG +AGPVV A + + ++ GI+DSKK++ R +L++KI A I I Sbjct: 32 AGMDEVGRGPIAGPVVSACVCMKADSEILGIDDSKKVTKAGRIKLFDKIIEDARAIGIGI 91 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 H ID+ NI AT A+ A+ ++ + R+ Sbjct: 92 VPHNIIDRINILNATKLAMRAALYDMLSVKRAV 124 >gi|126459394|ref|YP_001055672.1| ribonuclease HII [Pyrobaculum calidifontis JCM 11548] gi|126249115|gb|ABO08206.1| RNase HII [Pyrobaculum calidifontis JCM 11548] Length = 207 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 93/204 (45%), Gaps = 26/204 (12%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKI 75 ++ + + G+DE GRG L GP+V+A ++ D + + G+ DSK +S RE ++ ++ Sbjct: 7 LLSRPYLTVIGGVDEAGRGPLVGPLVIAVVVGDSDVLLGVGVRDSKALSPGARERVFARV 66 Query: 76 TSSAII---------------SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 A S + ID AT A + V++ V P Sbjct: 67 LEVAECVNYIVVEPHIVDMYTSKGLLNALEIDYTAKLLATCPADVYYVDSPDVKPER--- 123 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 G ++ + A+ KG+ +AAASI+AKV RDRL+ + ++ D+G GYP Sbjct: 124 YGSALSMATGKRIVALNKGE-RVPQVAAASIVAKVVRDRLIDLLKREVGDFG----SGYP 178 Query: 181 TAKHQQVIKEKG--PSCIHRLTFR 202 + ++G PS R +++ Sbjct: 179 SDPRTVEFVKRGLVPSECIRHSWK 202 >gi|156101113|ref|XP_001616250.1| ribonuclease H1 large subunit [Plasmodium vivax SaI-1] gi|148805124|gb|EDL46523.1| ribonuclease H1 large subunit , putative [Plasmodium vivax] Length = 288 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 54/214 (25%), Positives = 88/214 (41%), Gaps = 34/214 (15%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI--- 80 GIDE GRG + GP+V A + + I+DSKKIS RE ++ K+ +S++ Sbjct: 20 GIDEAGRGPVLGPMVYAGFYCNKEHEKLLKEMKIDDSKKISEADREMMFHKLNNSSLPFG 79 Query: 81 ISISSASHQYI-------DKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLP 130 I Q I K+N+++ + D ++++ +D P Sbjct: 80 WRIHVLMPQDISAKMLKKQKYNLNEISHDTAISIIDHVISRGCNLTEVFVDTVGKPSVYE 139 Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS--HVGY 179 + + K DS+ ++AASI AKVTRD L++ + P D GY Sbjct: 140 EKLKRLFPHIKCTVKEKADSLYPVVSAASICAKVTRDFLIKKWKYEEPLVNIDKGFGSGY 199 Query: 180 P-TAKHQQVIKE-----KGPSCIHRLTFRPLRNL 207 P + +K G I R ++ N+ Sbjct: 200 PGDPITKNFLKNNFDTVFGFPSIVRFSWSTADNM 233 >gi|255549406|ref|XP_002515756.1| ribonuclease hi large subunit, putative [Ricinus communis] gi|223545084|gb|EEF46595.1| ribonuclease hi large subunit, putative [Ricinus communis] Length = 299 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 53/212 (25%), Positives = 88/212 (41%), Gaps = 33/212 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI 80 + GIDE GRG + GP+V + + DSK + KREEL+E + ++ Sbjct: 17 CIMGIDEAGRGPVLGPMVYGCLYCARSYERTLSTLSFADSKTLKEDKREELFENLKANES 76 Query: 81 ISIS---------SASHQYIDKHNIHKATLDAIYHA---VENLQVIPRSALIDGR----- 123 I + SA +K N+++ + ++ V N V+ +D Sbjct: 77 IGWAVDVIDPRELSAKMLQKNKINLNEISHESAIGLITRVLNEGVLLTQVYLDTVGDAEK 136 Query: 124 ---SIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--V 177 + E P F V K DS+ ++ ASI+AKVTRDR +R + G + Sbjct: 137 YRIKLSERFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALRNWVLEETAEGISRNFGS 196 Query: 178 GYP-TAKHQQVIKEK-----GPSCIHRLTFRP 203 GYP + + +K+ G + R ++ Sbjct: 197 GYPGDPETKAWLKQHKHQVFGFPTLVRFSWGT 228 >gi|218887966|ref|YP_002437287.1| ribonuclease H [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758920|gb|ACL09819.1| Ribonuclease H [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 292 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 33/73 (45%), Positives = 46/73 (63%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 AV+ GD++ +++AASI+AK RD+LM +++P YG H GY TA+H I E G Sbjct: 209 QRAVVGGDALVPAVSAASILAKTFRDQLMTALDRRFPHYGLAVHKGYGTAEHMAAIAEHG 268 Query: 193 PSCIHRLTFRPLR 205 P HR TFR +R Sbjct: 269 PCPQHRATFRGVR 281 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 11/100 (11%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN----------IPFGINDSKKISHKKREELYEK 74 P GIDE GRG LAGPVV AA+IL P+ G+ DSKK++ KRE L + Sbjct: 17 PYVGIDEAGRGCLAGPVVAAAVILPPHADAATLADLLPDLAGLTDSKKLTAAKREALAPR 76 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQV 113 I A+ + + I++ NI +AT A++ AV L+ Sbjct: 77 IRQHAVAWGLGVVWPRDIERINILQATFHAMWRAVRFLRP 116 >gi|145329613|ref|NP_001077956.1| ribonuclease HII family protein [Arabidopsis thaliana] gi|330252564|gb|AEC07658.1| Ribonuclease H2 subunit A [Arabidopsis thaliana] Length = 277 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 45/202 (22%), Positives = 83/202 (41%), Gaps = 32/202 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKIT-SSA 79 + GIDE GRG + GP+V + + DSK + +KREELYE + + Sbjct: 15 CLMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEEKREELYESLKLDKS 74 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ------ 132 + ++ + + + K V ++ V+ A +D P+ + Sbjct: 75 LGWAVDVIDPRELSAKMLAK---------VLDMGVLLTEAYLDTVGDPDKYRIKLSERFP 125 Query: 133 -AFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--VGYP-TAKHQQ 186 V+ K DS+ ++ ASI+AKVTRDR ++ + + + GYP + + Sbjct: 126 SIKFVVSKKADSLFPIVSGASIVAKVTRDRALKEWLVEETGEDINRNFGSGYPGDPETKA 185 Query: 187 VIKEK-----GPSCIHRLTFRP 203 + + G + R ++ Sbjct: 186 WLVQHKHSVFGFPSLVRFSWGT 207 >gi|19173027|ref|NP_597578.1| BELONGS TO THE RIBONUCLEASE HII FAMILY [Encephalitozoon cuniculi GB-M1] gi|19168694|emb|CAD26213.1| BELONGS TO THE RIBONUCLEASE HII FAMILY [Encephalitozoon cuniculi GB-M1] Length = 239 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 87/208 (41%), Gaps = 32/208 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-IS 82 V GIDE GRG + G +V A+++ + G DSK ++ +R ++ I + Sbjct: 18 VVVGIDEAGRGPVVGYMVYGALVVPRGVLEDVGFKDSKVLTPAQRYNFFQMIKKKGFGYA 77 Query: 83 ISSASHQYIDKHN------IHKATLDAIYHAVENLQVIP---RSALIDG--------RSI 125 + YI + +++ ++ ++ ++ +Q + +D + Sbjct: 78 YHCSHPDYITEMMQVRSVSLNEVSIGSVLRILDEVQSKCRRVDTIYVDALGDCRKYKERL 137 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKH 184 +D P + + DS ++ ASI+AKV RD L+ +G D GYP+ + Sbjct: 138 EKDYPYRFVVEERADSKFQVVSGASIVAKVQRDMLISE-------FGEDLGSGYPSDPET 190 Query: 185 QQVIKE-----KGPSCIHRLTFRPLRNL 207 + +++ G R ++ ++ + Sbjct: 191 IRWLRKNINVVFGFPPGVRYSWATVKKM 218 >gi|18400719|ref|NP_565584.1| ribonuclease HII family protein [Arabidopsis thaliana] gi|49066054|sp|Q9SEZ6|RNH2A_ARATH RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|26450346|dbj|BAC42289.1| putative ribonuclease large subunit [Arabidopsis thaliana] gi|28973385|gb|AAO64017.1| putative ribonuclease large subunit [Arabidopsis thaliana] gi|330252563|gb|AEC07657.1| Ribonuclease H2 subunit A [Arabidopsis thaliana] Length = 296 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 90/212 (42%), Gaps = 33/212 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKIT-SSA 79 + GIDE GRG + GP+V + + DSK + +KREELYE + + Sbjct: 15 CLMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEEKREELYESLKLDKS 74 Query: 80 I-ISISSASHQYI-------DKHNIHKATLD---AIYHAVENLQVIPRSALIDGRSIPED 128 + ++ + + +K N+++ + + + V ++ V+ A +D P+ Sbjct: 75 LGWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPDK 134 Query: 129 LPCQ-------AFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--V 177 + V+ K DS+ ++ ASI+AKVTRDR ++ + + + Sbjct: 135 YRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALKEWLVEETGEDINRNFGS 194 Query: 178 GYP-TAKHQQVIKEK-----GPSCIHRLTFRP 203 GYP + + + + G + R ++ Sbjct: 195 GYPGDPETKAWLVQHKHSVFGFPSLVRFSWGT 226 >gi|56754417|gb|AAW25396.1| SJCHGC03278 protein [Schistosoma japonicum] Length = 289 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 54/212 (25%), Positives = 90/212 (42%), Gaps = 37/212 (17%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII-- 81 GIDE GRG + GP+V A + N + G+ DSK +S +RE+L + + + Sbjct: 3 GIDEAGRGPVLGPMVYACALSPINRLNELTTIGLADSKTLSEIQREKLLQDMLNKCDWMS 62 Query: 82 -SISSASHQYIDKHNI--HKATLDAIYH--AVENLQVIPR------SALIDGRSIPEDLP 130 + S YI + + K +L+ I H A++ +Q + +D E Sbjct: 63 AVVHVISPVYITEKMLDRSKTSLNVISHDSAIQLIQTVLDSGINLVEVYVDTVGKAEHYE 122 Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY----PDYGFDSHV 177 + + K D ++AASI AKVTRDR++++ K+ PD G Sbjct: 123 AKLQNLFPQLKIRVESKADDTYPIVSAASIFAKVTRDRILQMWPKEERGNVPD-GTGLGS 181 Query: 178 GYP----TAKHQQVIKE--KGPSCIHRLTFRP 203 GYP T + + + G + R ++ Sbjct: 182 GYPGDPVTKSYLRACLDPVFGFPSLVRSSWST 213 >gi|126466172|ref|YP_001041281.1| RNase HII [Staphylothermus marinus F1] gi|126014995|gb|ABN70373.1| RNase HII [Staphylothermus marinus F1] Length = 244 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 91/207 (43%), Gaps = 31/207 (14%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI-I 81 GIDE GRG L G +V+A ++++ + I G+ DSK+++ R + +KI A + Sbjct: 10 IGIDEAGRGPLIGDLVIAVLMINRDKIKNLISIGVRDSKQLTRHTRLIMAKKILKLADNV 69 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPCQAFA- 135 SI S + ID +NI+K + I A+ L I ID ++ + Sbjct: 70 SIIYISPEMIDSYNINKIIAEKIIIALRMLSQIINHYRTVSIYIDEIKGYKNYILTNLSK 129 Query: 136 ----------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK-H 184 D ++AASI+AK RD+ + K Y ++G GYP+ K Sbjct: 130 YINNIEEYVMEPNADQKYPVVSAASILAKTIRDKNIDFLKKIYGNFG----SGYPSDKIT 185 Query: 185 QQVI-----KEKGPSCIHRLTFRPLRN 206 + + +E P I R T+ LR Sbjct: 186 IKWLTKTYNEENEPPLIIRRTWSTLRK 212 >gi|242082852|ref|XP_002441851.1| hypothetical protein SORBIDRAFT_08g003480 [Sorghum bicolor] gi|241942544|gb|EES15689.1| hypothetical protein SORBIDRAFT_08g003480 [Sorghum bicolor] Length = 297 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 86/220 (39%), Gaps = 33/220 (15%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK 74 + GIDE GRG + GP+V + + DSK + ++REEL+E Sbjct: 8 WATKEPCLMGIDEAGRGPVLGPMVYGCMYCARSYNNTLSTLKFADSKTLKEEQREELFES 67 Query: 75 ITSSAIISIS---------SASHQYIDKHNIHKATLD---AIYHAVENLQVIPRSALIDG 122 + ++ I SA K N+++ + + + V ++ ++ ID Sbjct: 68 LKVNSSIGWEVDVICPKDLSAKMLKKSKVNLNEISHNSAMGLVRKVLDMGILLAEVYIDT 127 Query: 123 RSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIA--HKKYPDY 171 PE + K DS+ ++ ASI+AKVTRDR +R + Sbjct: 128 VGDPEKYRIKLTEKFPGIKFVVAKKADSLYPVVSGASIVAKVTRDRALRNWVFDETALSL 187 Query: 172 GFDSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLR 205 + GYP +Q +++ G + R ++ + Sbjct: 188 HMKTGSGYPGDPDTKQWLEDHKHPVFGFPTLVRFSWGTCK 227 >gi|149037818|gb|EDL92178.1| ribonuclease H2, large subunit, isoform CRA_b [Rattus norvegicus] gi|149037821|gb|EDL92181.1| ribonuclease H2, large subunit, isoform CRA_b [Rattus norvegicus] Length = 282 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 76/196 (38%), Gaps = 29/196 (14%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS--- 77 V G+DE GRG + GP+V A + + DSK ++ +RE L+ K+ Sbjct: 29 CVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGD 88 Query: 78 ---SA-------IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A +IS S + +++ T + + V +D +PE Sbjct: 89 FVGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQVFVDTVGMPE 148 Query: 128 DL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSH 176 + K DS+ ++AASIIAKV RD+ ++ + D Sbjct: 149 TYQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQFVESLQGLDSDYG 208 Query: 177 VGYPT-AKHQQVIKEK 191 GYP K + +++ Sbjct: 209 SGYPNDPKTKAWLRKH 224 >gi|194213064|ref|XP_001495257.2| PREDICTED: similar to Ribonuclease H2 subunit A (RNase H2 subunit A) (Ribonuclease HI subunit A) (Ribonuclease HI large subunit) (RNase HI large subunit) (RNase H(35)) (Aicardi-Goutieres syndrome 4 protein) (AGS4) [Equus caballus] Length = 299 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 47/214 (21%), Positives = 83/214 (38%), Gaps = 34/214 (15%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS------ 77 G+DE GRG + GP+V A + + DSK +S +R+ L+ ++ Sbjct: 32 GVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFARMKEDGDFVG 91 Query: 78 SA-------IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL- 129 A +IS S + +++ T + + V +D +PE Sbjct: 92 WALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLVQYALDQGVKVAQVFVDTVGMPETYQ 151 Query: 130 --------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHVGY 179 + K DS+ ++AASI AKV RD+ ++ +K D D GY Sbjct: 152 QRLQQRFPGIEVTVKAKADSLYPVVSAASICAKVARDQAVKNWKFVEKLQDSDTDYGSGY 211 Query: 180 PT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207 P K + ++ G R ++R +++ Sbjct: 212 PNDPKTKAWLRRHVEPVFGFPQFVRFSWRTAQSI 245 >gi|294890217|ref|XP_002773106.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC 50983] gi|239878004|gb|EER04922.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC 50983] Length = 350 Score = 117 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 54/228 (23%), Positives = 92/228 (40%), Gaps = 47/228 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI--- 80 GIDE GRG + GP+V A I D G NDSK+++ KR EL+E I + A+ Sbjct: 56 GIDEAGRGPVFGPMVYGAAISDIRKSDALGKMGFNDSKQLTEAKRSELFEGIHNEALKDD 115 Query: 81 ----ISISSASHQYI-------DKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIP 126 ++ + I +K N+++ + + +E+ + + +D P Sbjct: 116 GVLGFAVHVLTAHEISTKMLRRNKVNLNRISHETAIGLIEHALSEGINVKEVYVDTVGDP 175 Query: 127 EDLPCQAFAVI------------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP-DYGF 173 E + ++ K D+I +AASI AKV RDRL+ YP G Sbjct: 176 ERYQNKLSSIFKRRGVDTIVVCKKADAIYPICSAASICAKVIRDRLVEEEISYYPEGEGV 235 Query: 174 DS-------HVGYP-TAKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 + GYP A+ + +++ R ++ + + Sbjct: 236 ATLCRSVKVGSGYPGDAQTVEWLEKVVDPVFLFPRQIRFSWSTIEEIE 283 >gi|308159908|gb|EFO62424.1| Ribonuclease HI, large sub [Giardia lamblia P15] Length = 243 Score = 117 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 44/216 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELYEKI---- 75 + GIDE GRG + GP+V + G+ DSK +S RE +Y K+ Sbjct: 2 IVGIDEAGRGPVCGPLVYGIAWMPAEVYQTGILEKLGVTDSKALSADAREHIYSKLHDLP 61 Query: 76 -----TSSAIISISSASHQYI--DKHNIHKATLDAIYHAVENL--QVIPRSALIDGRS-- 124 ++AI+S S + K +++ + +A + L ID S Sbjct: 62 KEDFGCNTAIVSADQISRAMLAPHKTSLNLLSFEAARSLLYQLFTSYEIEHVYIDLVSPE 121 Query: 125 ------IPEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 I E +P A + K D+ AASIIAKVTRD+ ++ P +G Sbjct: 122 SQYATYIHELMPNIALTICAKADAKYPITGAASIIAKVTRDKHIK------PQWG----S 171 Query: 178 GYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207 GYP+ K ++ + + G R ++ ++ + Sbjct: 172 GYPSDPKTKEYLDKTCHSIYGFPTHIRHSWETIKRI 207 >gi|299473412|emb|CBN77810.1| conserved unknown protein [Ectocarpus siliculosus] Length = 320 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 81/220 (36%), Gaps = 36/220 (16%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSSA 79 + GIDE GRG + GP+ A D G +DSK ++ +R L+++I + Sbjct: 49 GVILGIDEAGRGPVLGPMTYGAAYWSCADDKEMSAKGFDDSKALTSDQRTSLFDRIDRTP 108 Query: 80 IISISS--ASHQYIDKHNIHK-------ATLDAI---YHAVENLQVIPRSALIDGRSIPE 127 + S + + K + DA AV+ V +D P Sbjct: 109 EVGWVLRLISARELSDKMCRKVPYSLNVISHDAAAELIRAVQARGVKVTQVYVDTVGDPA 168 Query: 128 DLPCQAFAVI----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173 + K DS+ + +AASI+AKVTRDR++ P+ F Sbjct: 169 FYQSKLEKEFGKGIKFVVAKKADSLYKTASAASIVAKVTRDRIVEGWQWSEPNLDFSEDR 228 Query: 174 DSHVGYPTAKHQQVIKE------KGPSCIHRLTFRPLRNL 207 GYP + + E G I R ++ + + Sbjct: 229 KYGSGYPGDEKCKKWLESNVDPVFGFPDICRFSWGTTKEI 268 >gi|110668982|ref|YP_658793.1| ribonuclease HII [Haloquadratum walsbyi DSM 16790] gi|109626729|emb|CAJ53196.1| ribonuclease HII [Haloquadratum walsbyi DSM 16790] Length = 231 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 54/220 (24%), Positives = 87/220 (39%), Gaps = 36/220 (16%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M P G DE G+G + GP++ AA+ P+ IP I+DSK+++ R L E + S I Sbjct: 1 MGPRIGSDEAGKGPVLGPMICAAVHASPSVIPDDIDDSKRLNASTRRRLRETLESHTAID 60 Query: 83 IS--SASHQYID--KHNIHKATLDAIYHAVENLQVIPRS---ALIDGRSIPEDLP----- 130 I ID + +++ TL+ A+ +L + + D + E Sbjct: 61 IGTAVIPVAQIDDPRTDMNTLTLNGHIAAIADLDGVATFNGTIVADASDVSESRFATRLE 120 Query: 131 -----------------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 C A D +AAASIIAK RD + K+Y G Sbjct: 121 SRLIDECNGIDTIALNHCSIEARHGADEDDPLVAAASIIAKARRDEQITALAKEYETTG- 179 Query: 174 DSHVGYPTAKHQQV-----IKEKG-PSCIHRLTFRPLRNL 207 GYP+ + + I+ G R ++ + ++ Sbjct: 180 PIGSGYPSDQKTRAFLRRYIRTNGKVPACARRSWATVDDI 219 >gi|303388657|ref|XP_003072562.1| ribonuclease HII [Encephalitozoon intestinalis ATCC 50506] gi|303301703|gb|ADM11202.1| ribonuclease HII [Encephalitozoon intestinalis ATCC 50506] Length = 239 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 84/219 (38%), Gaps = 32/219 (14%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELY 72 + + E + V GIDE GRG + G +V A+I + G DSK ++ +R + + Sbjct: 7 FFSSLEEISEEVVVGIDEAGRGPVIGYMVYGALISSRTTLENTGFRDSKVLTSGQRHDFF 66 Query: 73 EKITSSAIISISSAS-HQYIDKHNIHKATLDAIYHAVENLQV---------IPRSALIDG 122 + I + + YI + K+T + L++ + +D Sbjct: 67 KMIKERGFGYVYHCTHPDYITEMMQVKSTSLNEISLISVLKILEEIKAKCKKVDTVYVDA 126 Query: 123 --------RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174 + E P + K DS ++ ASI+AKV RD L+ +G + Sbjct: 127 LGDCEKYKARLEEAYPYKFVIEEKADSKFQIVSGASIVAKVQRDILIS-------QFGSN 179 Query: 175 SHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207 GYP+ + +K G R ++ ++ + Sbjct: 180 LGSGYPSDPDTIKWLKRNANAVFGFPPGVRYSWATVKRI 218 >gi|48478335|ref|YP_024041.1| ribonuclease HII [Picrophilus torridus DSM 9790] gi|73917829|sp|Q6KZK4|RNH2_PICTO RecName: Full=Ribonuclease HII; Short=RNase HII gi|48430983|gb|AAT43848.1| ribonuclease HII [Picrophilus torridus DSM 9790] Length = 199 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 50/202 (24%), Positives = 77/202 (38%), Gaps = 26/202 (12%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS- 82 V GIDE GRG + GP+V+A + ++I F +NDSK ++ KR ++ + S + Sbjct: 1 MCVCGIDEAGRGPVIGPMVMAMVC--ADDINFYVNDSKLLTRNKRSLIFNDV--SGLYHK 56 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVEN--LQVIPRSALIDGRSIPE---------DLPC 131 + ID + + E L+ ID + E Sbjct: 57 YYIINPAEIDDAVKKHSLNNLEEQYAEKLILKAECEKIYIDCFDVNESRLERILKDRTGK 116 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + D ++AASIIAKV RD + Y D+G GYP+ E Sbjct: 117 EVICRHHADRDIKIVSAASIIAKVLRDNEIEKLKSIYGDFG----SGYPSDPKTLRFLEH 172 Query: 192 GPS------CIHRLTFRPLRNL 207 I R ++ +NL Sbjct: 173 SIINHDNIDNIVRKEWKTYKNL 194 >gi|159467162|ref|XP_001691767.1| predicted protein [Chlamydomonas reinhardtii] gi|158279113|gb|EDP04875.1| predicted protein [Chlamydomonas reinhardtii] Length = 266 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 52/209 (24%), Positives = 87/209 (41%), Gaps = 27/209 (12%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREELYEKITSSAIIS 82 + G+DE GRG + GP+V A + G DSK ++H+ RE+L++ I + + + Sbjct: 36 CILGVDEAGRGPVLGPMVYACAFTSVSTDISSRGYADSKTLTHETREKLFKAIDADSGVG 95 Query: 83 IS--SASHQYIDKHNI-----------HKATLDAIYHAVENLQVIPRSALIDG----RSI 125 S Q+I H + AT I A+E+ + + D + Sbjct: 96 WVAHIMSAQFISGHMLGRDKTSLNALAFDATCAIIRRALESGANVYVDTVGDADRHRDRL 155 Query: 126 PEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA-K 183 P F V K DS+ ++AASI+AKV RD+ + + K G + GYP Sbjct: 156 SRAFPGLDFTVCPKADSLYPIVSAASIVAKVIRDKSLTDSQKSLGLTG-EVGTGYPGDSA 214 Query: 184 HQQVIKEK-----GPSCIHRLTFRPLRNL 207 +K+ G + R ++ + Sbjct: 215 TTTWLKQHMHPLWGFPRLVRHSWETCSRM 243 >gi|307198751|gb|EFN79554.1| Ribonuclease H2 subunit A [Harpegnathos saltator] Length = 337 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 80/218 (36%), Gaps = 42/218 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI--- 80 G+DE GRG + GP+V + + G DSK ++ KKR+E+++ I Sbjct: 66 GVDEAGRGPVLGPMVYGISYAPLSRKQLLVELGCADSKSLTEKKRDEIFDGICEHKDCIG 125 Query: 81 ISISSASHQYIDKHN----------IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + S I + + A V +D PE Sbjct: 126 WAVEAISPNVIANSMYRRTKVSLNETSMVSATELIKAAIEAGVNVAEVYVDTVGKPETYQ 185 Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIA-----HKKYP-DYGFDS 175 + AV K DS ++AASI AKV+RD +R +P +YG Sbjct: 186 ARLKAVFPGVKVVVAKKADSTYPIVSAASICAKVSRDHAIRAWRFREVDVAFPSEYG--- 242 Query: 176 HVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207 GYPT ++ + G + R ++ + Sbjct: 243 -SGYPTDPVTKKWLSANVDGVFGFPQLVRFSWSTAEQI 279 >gi|301100786|ref|XP_002899482.1| ribonuclease H2 subunit A, putative [Phytophthora infestans T30-4] gi|262103790|gb|EEY61842.1| ribonuclease H2 subunit A, putative [Phytophthora infestans T30-4] Length = 791 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 34/211 (16%) Query: 6 IPERPHFELEAMVREK-------NMWPVAGIDEVGRGALAGPVVVAA----IILDPNNIP 54 +P+RP+ + ++ + + GIDE GRG + GP+V A + ++ Sbjct: 1 MPDRPNLQRTLLLASDCPASCLNGVPVMLGIDEAGRGPVMGPMVYGAAYWPVAVNDAMCA 60 Query: 55 FGINDSKKISHKKREELYEKITSSA--IISISSASHQYI-DKHNIHKATLDAIYHA---- 107 G +DSK +S + R +L+EK+ S+ + S I DK + L+ + Sbjct: 61 LGFDDSKALSAESRAQLFEKMQSTEGLGWIVRLISAAEISDKMQRQTSNLNEMSRDAAIQ 120 Query: 108 ----VENLQVIPRSALIDGRSIPEDLP----------CQAFAVIKGDSISLSIAAASIIA 153 V+N + + +D P + K DS+ ++AASI A Sbjct: 121 LINEVQNKGAVVKKVFVDTVGDPRWYQSFLTKHFNGTIEFRVEKKADSLFKVVSAASIAA 180 Query: 154 KVTRDRLMRIAHKKYPDYGF--DSHVGYPTA 182 KVTRDR++ + P D GYP+ Sbjct: 181 KVTRDRVISDWMWESPALELPTDFGSGYPSD 211 >gi|21593541|gb|AAM65508.1| putative ribonuclease large subunit [Arabidopsis thaliana] Length = 280 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 45/210 (21%), Positives = 89/210 (42%), Gaps = 33/210 (15%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKIT-SSAI- 80 GIDE GRG + GP+V + + DSK + +KRE+LYE + ++ Sbjct: 1 MGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEEKREDLYESLKLDKSLG 60 Query: 81 ISISSASHQYI-------DKHNIHKATLD---AIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + + +K N+++ + + + V ++ V+ A +D P+ Sbjct: 61 WAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPDKYK 120 Query: 131 CQ-------AFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--VGY 179 + V+ K DS+ ++ ASI+AKVTRDR ++ + + + GY Sbjct: 121 IKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALKEWLVEETGEDINRNFGSGY 180 Query: 180 P-TAKHQQVIKEK-----GPSCIHRLTFRP 203 P + + + + G + R ++ Sbjct: 181 PGDPETKAWLVQHKHSVFGFPSLVRFSWGT 210 >gi|37362282|gb|AAQ91269.1| ribonuclease H2, large subunit [Danio rerio] gi|220678488|emb|CAP09311.2| novel protein similar to ribonuclease H2, large subunit (RNASEH2A, zgc:56307) [Danio rerio] Length = 307 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 50/214 (23%), Positives = 80/214 (37%), Gaps = 34/214 (15%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI---TSSAI 80 GIDE GRG + GP+V + + DSK ++ +RE L+ K+ S Sbjct: 32 GIDEAGRGPVLGPMVYGICFCPVSRKEDLKNLKVADSKTLTEAERENLFVKLDEAKSFVG 91 Query: 81 ISISSASHQYIDKHNIHKA--TLDAIYH-AVENL-------QVIPRSALIDGRSIPEDL- 129 ++ S I + +A L+A+ H A L V + +D E Sbjct: 92 WALQILSPNMISTSMLQRAKYNLNALSHDAAIGLVQYALDSGVQLKEVFVDTVGPAEKYQ 151 Query: 130 --------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA--HKKYPDYGFDSHVGY 179 + K DS+ ++AASI AKV RD ++ + D D GY Sbjct: 152 DKLSQRFPGVEVTVRPKADSLFPIVSAASICAKVARDHAVKSWKFAEDLGDVDTDYGSGY 211 Query: 180 PT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207 P K + + + G R ++ + L Sbjct: 212 PNDPKTKSWLLKYLDPVFGYPQFVRFSWSTAQTL 245 >gi|28374439|gb|AAH46061.1| Ribonuclease H2, subunit A [Danio rerio] Length = 307 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 50/214 (23%), Positives = 80/214 (37%), Gaps = 34/214 (15%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI---TSSAI 80 GIDE GRG + GP+V + + DSK ++ +RE L+ K+ S Sbjct: 32 GIDEAGRGPVLGPMVYGICFCPVSRKEDLKNLKVADSKTLTEAERENLFVKLDEAKSFVG 91 Query: 81 ISISSASHQYIDKHNIHKA--TLDAIYH-AVENL-------QVIPRSALIDGRSIPEDL- 129 ++ S I + +A L+A+ H A L V + +D E Sbjct: 92 WALQILSPNMISTSMLQRAKYNLNALSHDAAIGLVQYALDSGVQLKEVFVDTVGPAEKYQ 151 Query: 130 --------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA--HKKYPDYGFDSHVGY 179 + K DS+ ++AASI AKV RD ++ + D D GY Sbjct: 152 DKLSQRFPGVEVTVRPKADSLFPIVSAASICAKVARDHAVKSWKFAEDLGDVDTDYGSGY 211 Query: 180 PT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207 P K + + + G R ++ + L Sbjct: 212 PNDPKTKSWLLKYLDPVFGYPQFVRFSWSTAQTL 245 >gi|48762662|ref|NP_956520.2| ribonuclease H2 subunit A [Danio rerio] gi|47938809|gb|AAH71375.1| Ribonuclease H2, subunit A [Danio rerio] Length = 307 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 50/214 (23%), Positives = 80/214 (37%), Gaps = 34/214 (15%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI---TSSAI 80 GIDE GRG + GP+V + + DSK ++ +RE L+ K+ S Sbjct: 32 GIDEAGRGPVLGPMVYGICFCPVSRKEDLKNLKVADSKTLTEAERENLFVKLDEAKSFVG 91 Query: 81 ISISSASHQYIDKHNIHKA--TLDAIYH-AVENL-------QVIPRSALIDGRSIPEDL- 129 ++ S I + +A L+A+ H A L V + +D E Sbjct: 92 WALQILSPNMISTSMLQRAKYNLNALSHDAAIGLVQYALDSGVQLKEVFVDTVGPAEKYQ 151 Query: 130 --------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA--HKKYPDYGFDSHVGY 179 + K DS+ ++AASI AKV RD ++ + D D GY Sbjct: 152 DKLSQRFPGVEVTVRPKADSLFPIVSAASICAKVARDHAVKSWKFAEDLGDVDTDYGSGY 211 Query: 180 PT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207 P K + + + G R ++ + L Sbjct: 212 PNDPKTKSWLLKYLDPVFGYPQFVRFSWSTAQTL 245 >gi|148665343|gb|EDK97759.1| phosphatidylinositol glycan anchor biosynthesis, class Z [Mus musculus] Length = 799 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 23/184 (12%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80 V G+DE GR + GP+V A + + DSK ++ +RE L+ K+ Sbjct: 29 CVLGVDEAGRAPVLGPMVYAICYCPLSRLADPEALKVADSKTLTENERERLFTKMEEDGD 88 Query: 81 ---ISISSASHQYID-------KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 S+ S I K+N++ + D + N + IP S + Sbjct: 89 FVGWSLDVLSPNLISISMLGRVKYNLNSLSHDTAAELIWNARDIPGSIIT------ALSG 142 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHVGYPT-AKHQQV 187 + K DS+ ++AASI AKVTRD+ ++ + D D GYP+ K + Sbjct: 143 IEVTVKAKADSLFPVVSAASIFAKVTRDKAVKNWQFVEILQDLDSDYGSGYPSDPKTKAW 202 Query: 188 IKEK 191 ++ Sbjct: 203 LRRH 206 >gi|322489445|emb|CBZ24703.1| putative ribonuclease HII [Leishmania mexicana MHOM/GT/2001/U1103] Length = 268 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 101/246 (41%), Gaps = 77/246 (31%) Query: 37 LAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSA--------------- 79 +AGPV VAA + + P + + DSK++ R E E + + Sbjct: 1 MAGPVGVAATLYRISATPVRYAVVDSKQMKENARAETLEAMCAELSDSGVEGFMGTTARD 60 Query: 80 ---------------IISISSASHQYIDKHNIHKATLDAI----------YHAVENLQVI 114 ++ + I++ NI ATL+ + Y+A+ L ++ Sbjct: 61 GACCLVRYQRRKPLQAVAAALVDVSVINERNILNATLEGMSAVCDAIVRSYNAMSGLSIL 120 Query: 115 P---RSALIDGRSIP-----------------------EDLPCQ--------AFAVIKGD 140 + LIDG +P + + + V+KGD Sbjct: 121 TPLTCAILIDGNRVPWTFLSGEERQRVRVQAVRKVEARKRIGIEYPALDGFGCTTVVKGD 180 Query: 141 SISLSIAAASIIAKVTRDRL-MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 + LSIAAASI+AKV RD + + H+ +P YGFD H GY TA H+ + GPS HRL Sbjct: 181 ATLLSIAAASIVAKVARDAYAVSVMHRAFPQYGFDHHKGYCTAAHKAELARWGPSPFHRL 240 Query: 200 TFRPLR 205 + P++ Sbjct: 241 DYAPVK 246 >gi|302836379|ref|XP_002949750.1| hypothetical protein VOLCADRAFT_104408 [Volvox carteri f. nagariensis] gi|300265109|gb|EFJ49302.1| hypothetical protein VOLCADRAFT_104408 [Volvox carteri f. nagariensis] Length = 308 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 52/213 (24%), Positives = 88/213 (41%), Gaps = 32/213 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREELYEKITSSAIIS 82 + G+DE GRG + GP+V A+ ++ G DSK ++H+ RE+L+ I ++ + Sbjct: 34 CILGVDEAGRGPVLGPMVYASAFCPLSSDISGRGYADSKTLTHEAREKLFRAIDANTSVG 93 Query: 83 IS--SASHQYIDKHNI-----------HKATLDAIYHAVENLQVIPRSALIDGR------ 123 S Q+I + + AT I A+E+ + +D Sbjct: 94 WVAHIMSAQHISHNMLGRDKVSLNSLAFDATCHVIRTALES-GASVKQVYVDTVGDADRH 152 Query: 124 --SIPEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + P +F V K DS+ ++AASIIAKV RD+ + + G + GYP Sbjct: 153 SERLSRAFPGISFTVCPKADSLYPIVSAASIIAKVIRDKSLIDCRQALGLQG-EVGTGYP 211 Query: 181 TAKHQ-QVIKEK-----GPSCIHRLTFRPLRNL 207 +KE G + R ++ + Sbjct: 212 GDATTVAWLKEHIHPVLGFPPLVRHSWETCARM 244 >gi|209877739|ref|XP_002140311.1| ribonuclease HI large subunit [Cryptosporidium muris RN66] gi|209555917|gb|EEA05962.1| ribonuclease HI large subunit, putative [Cryptosporidium muris RN66] Length = 286 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 89/221 (40%), Gaps = 42/221 (19%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKKREELYEKI---TS 77 + GIDE GRG + GP+V A N I+DSKK++ RE++ + I + Sbjct: 20 VILGIDEAGRGPVLGPMVFACFYYPTENEKLLKLMNIDDSKKLTENSREKINKDIRNNKN 79 Query: 78 SAIISISSASHQYI-------DKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPE 127 I QY+ K+N+++ + A + ++++ V ID PE Sbjct: 80 QFGWGIYILLPQYLSCQMLKKQKYNLNEISHTAAINLIKSVLQHGVNVTHIYIDTVGPPE 139 Query: 128 DLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIA-----HKKYPDYG- 172 + + K DS+ ++ ASI+AKV RD + H +Y G Sbjct: 140 SYKKKLKLLFPSINITVTPKADSLYPCVSGASILAKVERDHFLSNWWSFPGHDRYDHNGN 199 Query: 173 ----FDSHVGYP----TAKHQQVI--KEKGPSCIHRLTFRP 203 ++ GYP T + + I K G I R ++ Sbjct: 200 NLSIYEQGSGYPGDPKTKQFLKQIFHKVFGFPNIVRFSWST 240 >gi|27382791|ref|NP_774320.1| ribonuclease HII [Bradyrhizobium japonicum USDA 110] gi|27355964|dbj|BAC52945.1| blr7680 [Bradyrhizobium japonicum USDA 110] Length = 111 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 1/108 (0%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + E VAG+DE G LAGPV A+IL P GI+DSKK+ REEL Sbjct: 2 LRFETSLWESGHAAVAGVDEAGMSPLAGPVSAGAVILKPGTRIVGIDDSKKLDAAAREEL 61 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 ++I A ++ + ID NI+ A + A+ AV L++ PR Sbjct: 62 AKEIKEKAESWCVAFVEVEEIDAINIYWAGIQAMQRAVRGLRLPPRIV 109 >gi|325189407|emb|CCA23898.1| ribonuclease H2 subunit A putative [Albugo laibachii Nc14] Length = 303 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 53/222 (23%), Positives = 88/222 (39%), Gaps = 42/222 (18%) Query: 25 PVAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + GIDE GRG + GP+V +A + G +DSK +S R+ LY+ IT S Sbjct: 23 VIMGIDEAGRGPVLGPMVYSAAYWAIDSNEACEAMGFDDSKVLSAASRKSLYKTITESTE 82 Query: 81 IS-----ISSASHQYI------DKHNIHKATLDAIYHAVENLQ---VIPRSALID----- 121 I S S I N+++ DA +E +Q V + +D Sbjct: 83 IGSISWIARSVSACEISDKMQRKVRNLNEIARDATIQIIEIVQAKRVCLQCVYVDTIGDP 142 Query: 122 ---GRSIPEDLPCQAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKK-----YPDY 171 + + + V+ K D + ++AASI+AKV RD ++ + P Sbjct: 143 SWYQNFLTKHFREKITFVVRKKADQLFKIVSAASIVAKVIRDTILEEWKWETLTHTLP-- 200 Query: 172 GFDSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207 + GYP+ + + + I R ++ + NL Sbjct: 201 -TEFGSGYPSDPSTKAWLLQYRDPIFAYPNIVRFSWSTIENL 241 >gi|313609088|gb|EFR84798.1| ribonuclease HII [Listeria monocytogenes FSL F2-208] Length = 142 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 1/82 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ LY Sbjct: 60 QYEKDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALY 119 Query: 73 EKITSSAI-ISISSASHQYIDK 93 E I + AI + + H ID+ Sbjct: 120 ETIQTEAIAVGVGIIEHNVIDQ 141 >gi|148673841|gb|EDL05788.1| mCG129830, isoform CRA_a [Mus musculus] Length = 226 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 76/196 (38%), Gaps = 29/196 (14%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS--- 77 V G+DE GRG + GP+V A + + DSK ++ +RE L+ K+ Sbjct: 29 CVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGD 88 Query: 78 ---SA-------IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A +IS S + +++ T + + V +D +PE Sbjct: 89 FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPE 148 Query: 128 DL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSH 176 + K DS+ ++AASI AKV RD+ ++ + D D Sbjct: 149 TYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYG 208 Query: 177 VGYPT-AKHQQVIKEK 191 GYP K + +++ Sbjct: 209 SGYPNDPKTKAWLRKH 224 >gi|307188511|gb|EFN73248.1| Ribonuclease H2 subunit A [Camponotus floridanus] Length = 334 Score = 115 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 50/214 (23%), Positives = 81/214 (37%), Gaps = 35/214 (16%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI--- 80 G+DE GRG + GP+V + + G DSK ++ KKR+E+++ I Sbjct: 65 GVDEAGRGPVLGPMVYGISYAPLSRKQLLVDLGCADSKSLTEKKRDEIFDDICKHKDSIG 124 Query: 81 ISISSASHQYIDKHN-----------IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 +I + S I + + I A+E V +D PE Sbjct: 125 WAIEAISPNVIANSMYRRTKVSLNEVSMVSAIKLIQGAIEA-GVNVAEIYVDTVGKPESY 183 Query: 130 PCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD-YGFDSHVGY 179 + V K D+ ++AASI AKV+RD +R + D G + GY Sbjct: 184 QARLKGVFPGVKIVVAKKADATYPIVSAASICAKVSRDHALRAWRFREGDSIGTEYGSGY 243 Query: 180 PT-AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207 PT + + E G + R ++ + Sbjct: 244 PTDPVTKNWLSENVDAVFGFPQLVRFSWSTAEQI 277 >gi|159118024|ref|XP_001709231.1| Ribonuclease HI, large sub [Giardia lamblia ATCC 50803] gi|157437347|gb|EDO81557.1| Ribonuclease HI, large sub [Giardia lamblia ATCC 50803] Length = 243 Score = 115 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 51/216 (23%), Positives = 86/216 (39%), Gaps = 44/216 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELYEKITS-- 77 + GIDE GRG + GP+V + G+ DSK +S RE +Y ++ Sbjct: 2 IVGIDEAGRGPVCGPLVYGIAWMPAEVYQTGILEKLGVTDSKALSANTREHIYNRLQDLP 61 Query: 78 -------SAIISISSASHQYI--DKHNIHKATLDAIYHAVENL--QVIPRSALID----- 121 +AI+S S + K +++ + +A + L ID Sbjct: 62 KEDFGCNTAIVSADQISRAMLAPHKTSLNLLSFEAARSLLYQLFISHEIEHVYIDLVGPE 121 Query: 122 ---GRSIPEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 I E +P A + K D+ AASI+AKV RDR ++ P +G Sbjct: 122 SQYAAYIRELMPSIALTICAKADAKYPITGAASIVAKVIRDRNIK------PQWG----S 171 Query: 178 GYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207 GYP+ K ++ + + G R ++ ++ + Sbjct: 172 GYPSDPKTKKYLDKTCHGIYGFPTHIRHSWETIKRI 207 >gi|253748461|gb|EET02569.1| Ribonuclease HI, large sub [Giardia intestinalis ATCC 50581] Length = 243 Score = 115 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 53/216 (24%), Positives = 89/216 (41%), Gaps = 44/216 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELYEKI---- 75 + GIDE GRG + GP+V + G+NDSK +S RE +YE++ Sbjct: 2 IVGIDEAGRGPVCGPLVYGIAWMPAKVYQTGILEKLGVNDSKALSADTREYIYEQLHALP 61 Query: 76 -----TSSAIISISSASHQYI--DKHNIHKATLDAIYHAVENL--QVIPRSALIDGRS-- 124 ++A+IS S + K +++ + +A + + ID S Sbjct: 62 KDDFGCNTAVISADQISRAMLAPRKTSLNLLSFEAARSLLYQVFTSYEIEHVYIDLVSPE 121 Query: 125 ------IPEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 I E +P A + K D AASI+AKVTRDR ++ +G Sbjct: 122 SQYAAYIRELMPNLALTICAKADGKYPITGAASIVAKVTRDRHIKA------QWG----S 171 Query: 178 GYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207 GYP+ K ++ + + G R ++ ++ + Sbjct: 172 GYPSDPKTKEYLDKACHSIYGFPAHIRHSWETVKRI 207 >gi|15668305|ref|NP_247101.1| ribonuclease HII [Methanocaldococcus jannaschii DSM 2661] gi|2495822|sp|Q57599|RNH2_METJA RecName: Full=Ribonuclease HII; Short=RNase HII gi|1590900|gb|AAB98116.1| ribonuclease HII (rnhB) [Methanocaldococcus jannaschii DSM 2661] Length = 230 Score = 115 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 85/222 (38%), Gaps = 42/222 (18%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA 79 + GIDE GRG + GP+VV A ++ G+ DSK+++ KR L + + + Sbjct: 1 MIIIGIDEAGRGPVLGPMVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYLKKLLENLG 60 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHA--------VENLQVIPRSA--LIDGRSIP--- 126 + + I++ D +A +E L + ID S Sbjct: 61 YVEKRILEAEEINQLMNSINLNDIEINAFSKVAKNLIEKLNIRDDEIEIYIDACSTNTKK 120 Query: 127 ---------------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 +L + A K D+ ++AASIIAK RD ++ K Y D Sbjct: 121 FEDSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAKAERDEIIDYYKKIYGDI 180 Query: 172 GFDSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207 G GYP+ K + +++ I R ++ + + Sbjct: 181 G----SGYPSDPKTIKFLEDYFKKHKKLPDIARTHWKTCKRI 218 >gi|169806222|ref|XP_001827856.1| ribonuclease HII [Enterocytozoon bieneusi H348] gi|161779304|gb|EDQ31327.1| ribonuclease HII [Enterocytozoon bieneusi H348] Length = 252 Score = 115 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 51/230 (22%), Positives = 94/230 (40%), Gaps = 36/230 (15%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELY 72 L + ++E + GIDE GRG + GP+V AA ++ N DSK+++ R+ Y Sbjct: 3 LFSNIKETTEEVIVGIDEAGRGPVIGPMVYAAYVMHTNERRIRQFIDSKQLTPNTRKNYY 62 Query: 73 EKITSSAIISISSA---SHQYIDKHNIHKATLDAIYHAVENLQVIP---RSALIDGRSIP 126 + + A I I ++ N+++ +A+ + + + ID Sbjct: 63 ATMMNFAYIVIEPIYITTYMNNHIKNLNQIAEEAVVQLLNEINNKCKNVKMVYIDALGNV 122 Query: 127 EDLPCQAFAVI--------KGDSISLSIAAASIIAKVTRDR-LMRIAHKKYPDY------ 171 + A K D+ ++AASI+AK+ RD + + +Y Sbjct: 123 SNYKKNLQAHFKFNFTIEAKADATYEVVSAASIVAKINRDAFFSSKTNNIHENYYTKLGY 182 Query: 172 -------GFDS-HVGYPTAKH-QQVIKEK-----GPSCIHRLTFRPLRNL 207 F+ GYP+ H QQ +K+ G + I R ++ +++L Sbjct: 183 EELTSIKDFNHCGSGYPSDPHTQQWLKDNFHPISGFNSIVRHSWSTIQSL 232 >gi|157866086|ref|XP_001681749.1| ribonuclease hii [Leishmania major strain Friedlin] gi|68125048|emb|CAJ02388.1| putative ribonuclease HII [Leishmania major strain Friedlin] Length = 268 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 96/246 (39%), Gaps = 77/246 (31%) Query: 37 LAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSA--------------- 79 +AGPV VAA + + P + + DSKK+ R E E + + Sbjct: 1 MAGPVGVAATLYRISATPVRYAVMDSKKMKESDRAETLEAMCAELSDAGVEGFVGTTVRD 60 Query: 80 ---------------IISISSASHQYIDKHNIHKATLDAI----------YHAVENLQ-- 112 ++ + I++ NI ATL+ + Y+AV L Sbjct: 61 GACCLVRYQRRKPLQAVAAALVDVSVINERNILNATLEGMSAVCEAVVRSYNAVSGLGTL 120 Query: 113 -VIPRSALIDGRSIPEDL-------------------------------PCQAFAVIKGD 140 + + LIDG +P V+KGD Sbjct: 121 TPLTCAILIDGNRVPWTFLSGEERQRVCVQAVRKVEARKRIGVEYPALDGFSCTTVVKGD 180 Query: 141 SISLSIAAASIIAKVTRDRL-MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 + LSIAAASI+AKV RD + + H +P YGFD H GY TA H+ + GPS HRL Sbjct: 181 ATLLSIAAASIVAKVARDAYAVSVMHPAFPQYGFDHHKGYCTAAHKAELARWGPSRFHRL 240 Query: 200 TFRPLR 205 + P++ Sbjct: 241 DYAPVK 246 >gi|242094016|ref|XP_002437498.1| hypothetical protein SORBIDRAFT_10g028180 [Sorghum bicolor] gi|241915721|gb|EER88865.1| hypothetical protein SORBIDRAFT_10g028180 [Sorghum bicolor] Length = 297 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 86/221 (38%), Gaps = 39/221 (17%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK 74 + GIDE GRG + GP+V + + DSK + ++REEL+E Sbjct: 8 WATKEPCLMGIDEAGRGPVLGPMVYGCMYCARSYNNTLATLKFADSKTLKEEQREELFES 67 Query: 75 ITSSAIISIS---------SASHQYIDKHNIHKATLD---AIYHAVENLQVIPRSALIDG 122 + ++ I SA K N+++ + + + + ++ V+ ID Sbjct: 68 LKVNSSIGWEVDVICPKDLSAKMLRKSKVNLNEISHNSAMGLVRKLLDMGVLLAEVYIDT 127 Query: 123 RSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIA--HKKYPDY 171 PE + K DS+ ++ ASI+AKVTRDR +R + + Sbjct: 128 VGDPEKYRIKLTEKFPGIKFVVAKKADSLYPVVSGASIVAKVTRDRALRNWVFDETALNM 187 Query: 172 GFDSHVGYP----TAKHQQVIKEK-----GPSCIHRLTFRP 203 + GYP T Q +++ G + R ++ Sbjct: 188 HMKTGSGYPGDTDTK---QWLQDHKHPVFGFPTLVRFSWGT 225 >gi|194766523|ref|XP_001965374.1| GF24795 [Drosophila ananassae] gi|190617984|gb|EDV33508.1| GF24795 [Drosophila ananassae] Length = 347 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 83/222 (37%), Gaps = 49/222 (22%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI--- 80 G+DE GRG + GP+V G DSK+++ +KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGIAYCPLESKKALEDLGCADSKQLTEEKRDIIFNDINTKDYATS 133 Query: 81 ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126 ++ S I + K +L+ I A++ V +D P Sbjct: 134 CIGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNISEVYVDTVGPP 192 Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173 E + K DS ++AASI AKVTRD +++ + +P+ G Sbjct: 193 EKYQEKLLKRFPTFKITVAKKADSTYPIVSAASICAKVTRDHALKVWN--FPE-GLVIKD 249 Query: 174 -DSHVGYP----TA----KHQQVIKEKGPSCIHRLTFRPLRN 206 GYP T +H V+ G + R ++ N Sbjct: 250 NAFGSGYPGDPVTKRFLAEHIDVV--FGFPRLVRFSWSTAEN 289 >gi|297703733|ref|XP_002828781.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease H2 subunit A-like [Pongo abelii] Length = 313 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 82/230 (35%), Gaps = 55/230 (23%) Query: 25 PVAGIDEVGRGALAGP-------------VVVAAIILD----PNNIPFGINDSKKISHKK 67 V G+DE GRG L GP +V A + + DSK + + Sbjct: 29 CVLGVDEAGRGPLIGPRLPENXHPSSPGPMVYAICYCPLSRLADLEALKVADSKTLLESE 88 Query: 68 REELYEKITSSAIISIS--SASHQYID-------KHNIHKATLD---AIYHAVENLQVIP 115 RE L+ K+ + + S I K+N++ + D + + V Sbjct: 89 RERLFAKMEDRDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNV 148 Query: 116 RSALIDGRSIPEDL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA-- 164 +D +PE + K D++ ++AASI AKV RD+ ++ Sbjct: 149 TQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQF 208 Query: 165 -----HKKYPDYGFDSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203 Y DYG GYP K + +KE G R ++R Sbjct: 209 VEKLQDSXYTDYG----SGYPQDPKTKAWLKEHVEPVFGFPQFVRFSWRT 254 >gi|156542709|ref|XP_001603515.1| PREDICTED: similar to ENSANGP00000022231 [Nasonia vitripennis] Length = 350 Score = 114 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 45/213 (21%), Positives = 86/213 (40%), Gaps = 34/213 (15%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI--- 80 G+DE GRG + GP+V + G DSK ++ +KR+ +++KI + Sbjct: 82 GVDEAGRGPVLGPMVYGIAYAPLSQKKLLVDMGCADSKSLTEEKRDTIFDKICDNGDKMG 141 Query: 81 ISISSASHQYI-------DKHNIHKATLD----AIYHAVENLQVIPRSALIDGRSIPEDL 129 ++ + S YI K ++++ +++ I A+++ V +D PE Sbjct: 142 YAVDAISPNYIANCMYRRTKTSLNEVSMNSAISLIKQAIDS-GVFVAEIYVDTVGKPEKY 200 Query: 130 PCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + + K DS ++AASI AKV+RD +R + + + GYP Sbjct: 201 QAKLEGIFPGIKIVVAKKADSTYPIVSAASICAKVSRDHALRAWQFRETENESEYGSGYP 260 Query: 181 T-AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207 + + G + R ++ + Sbjct: 261 NDPVTKSWLSSNVDPIFGFPQLVRFSWSTAEKI 293 >gi|146080572|ref|XP_001464032.1| ribonuclease hii [Leishmania infantum JPCM5] gi|134068122|emb|CAM66407.1| putative ribonuclease HII [Leishmania infantum JPCM5] gi|322497431|emb|CBZ32505.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 268 Score = 114 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 97/246 (39%), Gaps = 77/246 (31%) Query: 37 LAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSA--------------- 79 +AGPV VAA + + P + + DSKK+ R E E + + Sbjct: 1 MAGPVGVAATLYRISATPVRYAVLDSKKMKEIDRAETLEAMCAELSDAGVEGFVGTTVRD 60 Query: 80 ---------------IISISSASHQYIDKHNIHKATLDAI----------YHAVENLQ-- 112 ++ + I++ NI ATL+ + Y+AV L Sbjct: 61 GTCCLVRYQRRKPLQAVAAALVDVSVINERNILNATLEGMSAVCDAVVRSYNAVSGLDTL 120 Query: 113 -VIPRSALIDGRSIPEDL-------------------------------PCQAFAVIKGD 140 + + LIDG +P V+KGD Sbjct: 121 TPLTCAILIDGNRVPWTFLSGEERQRVCVQAVRKVEARKRIGVEYPALDGFGCTTVVKGD 180 Query: 141 SISLSIAAASIIAKVTRDRL-MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 + LSIAAASI+AKV RD + + H+ +P YGFD H GY TA H+ + GPS HRL Sbjct: 181 ATLLSIAAASIVAKVARDAYAVSVMHRAFPQYGFDHHKGYCTAAHKAELARWGPSRFHRL 240 Query: 200 TFRPLR 205 + P++ Sbjct: 241 DYAPVK 246 >gi|322799751|gb|EFZ20956.1| hypothetical protein SINV_11176 [Solenopsis invicta] Length = 353 Score = 114 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 47/217 (21%), Positives = 79/217 (36%), Gaps = 41/217 (18%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKI---TSSAI 80 G+DE GRG + GP+V + + G DSK ++ KKR+E+++ I + Sbjct: 84 GVDEAGRGPVLGPMVYGISYAPLSQKQLLVDLGCADSKSLTEKKRDEIFDDICERKENIG 143 Query: 81 ISISSASHQYIDKHN----------IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +I + S I + + + V +D PE Sbjct: 144 WAIEAISPNIISNSMYRRTKVSLNEVSMISATNLIQGAIEAGVNVAEIYVDTVGKPESYQ 203 Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP-----DYGFDSH 176 + V K D+ ++AASI AKVTRD +R + YG Sbjct: 204 ARLKGVFPGIKIVVAKKADATYPIVSAASICAKVTRDHAIRAWRFREGENIETQYG---- 259 Query: 177 VGYPT-AKHQQVI-----KEKGPSCIHRLTFRPLRNL 207 GYPT ++ + + G + R ++ + Sbjct: 260 SGYPTDPVTKKWLSTNVDRVFGFPQLVRFSWSTAEQI 296 >gi|332797850|ref|YP_004459350.1| ribonuclease HII [Acidianus hospitalis W1] gi|332695585|gb|AEE95052.1| ribonuclease HII [Acidianus hospitalis W1] Length = 192 Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats. Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 24/188 (12%) Query: 41 VVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHN 95 +V+A +I+D G+ DSK +S +KRE+L+E I+ A ++ A ID N Sbjct: 1 MVIAGVIIDEKIEGMLKEVGVKDSKILSREKREKLFEIISEFAEAYIVNKAYPNEIDSSN 60 Query: 96 IHKATLDAIYHAV-ENLQVIPRSALIDGRSIPE-------DLPCQAFAVIKGDSISLSIA 147 +++ T + + +L + P+ ID + +L + V D + + Sbjct: 61 LNELTYSKVIQIIYASLPLHPKIVTIDKVGNEDIVIMKIRELGLKDNVVFNADVKYIEAS 120 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVI------KEKGPSCIHRLT 200 AASIIAKVTRDR++ K Y D+G GYP+ K ++ I + P I R T Sbjct: 121 AASIIAKVTRDRIIDSLKKIYGDFG----SGYPSDPKTRKWIIEIYEKDKNNPPPIIRRT 176 Query: 201 FRPLRNLS 208 ++ L ++ Sbjct: 177 WKTLLKIA 184 >gi|328783769|ref|XP_396289.3| PREDICTED: ribonuclease H2 subunit A-like isoform 1 [Apis mellifera] Length = 350 Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats. Identities = 44/212 (20%), Positives = 75/212 (35%), Gaps = 32/212 (15%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI--- 80 GIDE GRG + GP+V + + G DSK ++ +KR+ +++KI Sbjct: 82 GIDEAGRGPVLGPMVYGISYAPLSEKQLLVDLGCADSKSLTEEKRDTIFDKICEQYKTIG 141 Query: 81 ISISSASHQYIDKHN----------IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ S I + + + V +D PE Sbjct: 142 WAVDVISPNVISNSMYRRVKTSLNEVSMNSAIELAKLVIEAGARITEIYVDTIGKPEKYQ 201 Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + + K DS ++AASI AKV+RD +R + GYP Sbjct: 202 AKLEQIFPDIKITVAKKADSTYPIVSAASICAKVSRDHAIRAWQFLEGSITTEYGSGYPN 261 Query: 182 -AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207 + ++ + E G I R ++ + Sbjct: 262 DPETKKWLSENVDPVFGFPHIVRFSWSTAEKI 293 >gi|221057860|ref|XP_002261438.1| ribonuclease H1 large subunit [Plasmodium knowlesi strain H] gi|194247443|emb|CAQ40843.1| ribonuclease H1 large subunit, putative [Plasmodium knowlesi strain H] Length = 288 Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 34/214 (15%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI--- 80 GIDE GRG + GP+V A + + I+DSKKIS RE ++ K+ +S + Sbjct: 20 GIDEAGRGPVLGPMVYAGFYCNKEHEKLLKEMKIDDSKKISEADREMMFHKLNNSKLPFG 79 Query: 81 ISISSASHQYI-------DKHNIHKATLDAIYHAVENL---QVIPRSALIDGR---SIPE 127 I Q I K+N+++ + D + ++ +D ++ E Sbjct: 80 WRIHVLMPQDISAKMLKKQKYNLNEISHDTAISIINHVISRGCNLTEVFVDTVGKANVYE 139 Query: 128 DLPCQAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS--HVGY 179 + + F I K DS+ ++AASI AKVTRD L++ + P D GY Sbjct: 140 EKLTKLFPHIKCTVREKADSLYPVVSAASICAKVTRDFLIKKWKYEEPLVNIDKGFGSGY 199 Query: 180 P-TAKHQQVIKE-----KGPSCIHRLTFRPLRNL 207 P + +K G I R ++ N+ Sbjct: 200 PGDPITKNFLKNNFDSVFGFPSIVRFSWSTADNM 233 >gi|289582357|ref|YP_003480823.1| ribonuclease HII [Natrialba magadii ATCC 43099] gi|289531910|gb|ADD06261.1| ribonuclease HII [Natrialba magadii ATCC 43099] Length = 221 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 78/208 (37%), Gaps = 28/208 (13%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAIISISS 85 G+DE G+G + G + AA+ ++ +P GI DSK+++ +R+EL + I + Sbjct: 3 IGVDEAGKGPVLGSMFAAAVHVERETVLPDGIADSKRLTPARRDELAATLREDDRIGVGV 62 Query: 86 ASH--QYIDKHNIHKATLDAIYHAVENLQVIPRSAL------------IDGRSIPE---- 127 A ID +L HA V + L D Sbjct: 63 AEITTAQIDDPETDMNSLSVRAHAEAIEAVAADTVLEAPITGLCDACDTDADRFARRVAD 122 Query: 128 --DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 L C A D S + AASIIAKV RD + +PD G GYP+ + Sbjct: 123 RCGLECTISAEHGADDDSPIVGAASIIAKVERDTHVESVSAAFPDCG-PVGSGYPSDPNT 181 Query: 186 QVIKE-----KGPSCI-HRLTFRPLRNL 207 + E G R ++ ++ Sbjct: 182 RAFLESYVDAHGELPACARESWSTCEDV 209 >gi|225464176|ref|XP_002269852.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] Length = 278 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 50/198 (25%), Positives = 77/198 (38%), Gaps = 28/198 (14%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIIS 82 GIDE GRG + GP+V + + DSK + +KREEL+E + + I Sbjct: 17 MGIDEAGRGPVLGPMVYGCLYCARSYHNTLSTLNFADSKTLKEEKREELFENLKADESIG 76 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR--------SIPEDLPCQAF 134 + ID + L V N+ V+ +D + E P F Sbjct: 77 WA---VDVIDPWELSAKMLKK----VLNMGVLLTEVYVDTVGDAEKYRIKLSERFPAVKF 129 Query: 135 AVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--VGYP-TAKHQQVIKE 190 V K DS+ ++ ASI+AKVTRDR +R + GYP + ++ Sbjct: 130 VVAKKADSLYPVVSGASIVAKVTRDRALRDWVLVETAENMHRNFGSGYPGDPVTKSWLQH 189 Query: 191 K-----GPSCIHRLTFRP 203 G + R ++ Sbjct: 190 HKHSVFGFPTLVRFSWGT 207 >gi|326431468|gb|EGD77038.1| ribonuclease [Salpingoeca sp. ATCC 50818] Length = 421 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 83/224 (37%), Gaps = 47/224 (20%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80 + G+DE GRG + GP+V G DSK + ++RE L+ ++ S ++ Sbjct: 126 CILGVDEAGRGPVCGPMVYGVAFAPKPMEKTLKNMGFTDSKVVKEEERERLFTEMKSGSL 185 Query: 81 ---------------ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 IS + Q + + T + + V + +D Sbjct: 186 HGKMGWKVHSLSPNTISTGMLARQKYSLNELSHDTCIGLIRRCLDQGVNLEAVYVDTVGP 245 Query: 126 PEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP------- 169 + + K DS + ++AASI AKV RD ++ ++P Sbjct: 246 DTVYQAKLQGIFPQLKITVSKKADSKYVIVSAASICAKVVRDHVLS--AWRHPERIGANT 303 Query: 170 DYGFDSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207 +YG GYP+ K + ++ G + R +++ + L Sbjct: 304 EYG----CGYPSDPKTKAWLRANIDKVFGFPSVVRFSWQTAQTL 343 >gi|115484243|ref|NP_001065783.1| Os11g0153900 [Oryza sativa Japonica Group] gi|62701661|gb|AAX92734.1| ribonuclease HII, putative [Oryza sativa Japonica Group] gi|77548724|gb|ABA91521.1| ribonuclease HI large subunit, putative, expressed [Oryza sativa Japonica Group] gi|113644487|dbj|BAF27628.1| Os11g0153900 [Oryza sativa Japonica Group] gi|125576251|gb|EAZ17473.1| hypothetical protein OsJ_33004 [Oryza sativa Japonica Group] Length = 298 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 90/219 (41%), Gaps = 35/219 (15%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK 74 + GIDE GRG + GP+V + + DSK + ++REEL+E Sbjct: 9 WATKEPCLMGIDEAGRGPVLGPMVYGCMYCARSYQDTLATLKFADSKTLKEEQREELFES 68 Query: 75 ITSSAIISIS---------SASHQYIDKHNIHKATLD----AIYHAVENLQVIPRSALID 121 + ++ I SA K N+++ + + + A++ + V+ ID Sbjct: 69 LKDNSSIGWEVDVICPKELSAKMLKRSKVNLNEISHNSAMGLVKRALD-MGVLLAEVYID 127 Query: 122 GR--------SIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIA--HKKYPD 170 + E P F V K DS+ ++ ASI++KVTRDR +R + + Sbjct: 128 TVGDAEKYRIKLTEKFPGIKFVVAKKADSLFPVVSGASIVSKVTRDRALRNWVFDETAQN 187 Query: 171 YGFDSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRP 203 ++ GYP +Q +++ G + R ++ Sbjct: 188 MHMNTGSGYPGDPSTKQWLEDHKHPIFGFPSLVRFSWGT 226 >gi|125533439|gb|EAY79987.1| hypothetical protein OsI_35154 [Oryza sativa Indica Group] Length = 298 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 90/219 (41%), Gaps = 35/219 (15%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK 74 + GIDE GRG + GP+V + + DSK + ++REEL+E Sbjct: 9 WATKEPCLMGIDEAGRGPVLGPMVYGCMYCARSYQDTLATLKFADSKTLKEEQREELFES 68 Query: 75 ITSSAIISIS---------SASHQYIDKHNIHKATLD----AIYHAVENLQVIPRSALID 121 + ++ I SA K N+++ + + + A++ + V+ ID Sbjct: 69 LKDNSSIGWEVDVICPKELSAKMLKRSKVNLNEISHNSAMGLVKRALD-MGVLLAEVYID 127 Query: 122 GR--------SIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIA--HKKYPD 170 + E P F V K DS+ ++ ASI++KVTRDR +R + + Sbjct: 128 TVGDAEKYRIKLTEKFPGIKFVVAKKADSLFPVVSGASIVSKVTRDRALRNWVFDETAQN 187 Query: 171 YGFDSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRP 203 ++ GYP +Q +++ G + R ++ Sbjct: 188 MHMNTGSGYPGDPSTKQWLEDHKHPIFGFPSLVRFSWGT 226 >gi|332030069|gb|EGI69894.1| Ribonuclease H2 subunit A [Acromyrmex echinatior] Length = 332 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 48/218 (22%), Positives = 85/218 (38%), Gaps = 43/218 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI--- 80 G+DE GRG + GP+V + + G DSK ++ KKR+E+++ I Sbjct: 65 GVDEAGRGPVLGPMVYGISYAPLSQNQLLVDLGCADSKSLTEKKRDEIFDDICKHKDSIG 124 Query: 81 ISISSASHQYI-------DKHNIHKATL----DAIYHAVENLQVIPRSALIDGRSIPEDL 129 +I S I K ++++ ++ + I A+E V +D PE Sbjct: 125 WAIEVISPNVIANNMYRRTKISLNEISMISATNLIREAIEA-GVNVAEIYVDTVGKPESY 183 Query: 130 PCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIA-----HKKYPDYGFDS 175 + ++ K D+ ++AASI AKV+RD +R +YG Sbjct: 184 QTRLKSIFPSIKIIVAKKADATYPIVSAASICAKVSRDHAIRAWRFREDDCIETEYG--- 240 Query: 176 HVGYPT-AKHQQVI-----KEKGPSCIHRLTFRPLRNL 207 GYP + + + G + R ++ + Sbjct: 241 -SGYPNDPVTKNWLSMNVDQVFGFPQLVRFSWSTAEQI 277 >gi|300710295|ref|YP_003736109.1| ribonuclease HII [Halalkalicoccus jeotgali B3] gi|299123978|gb|ADJ14317.1| ribonuclease HII [Halalkalicoccus jeotgali B3] Length = 214 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 53/200 (26%), Positives = 87/200 (43%), Gaps = 30/200 (15%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKIT-SSAI-ISIS 84 GIDE G+G + GP++ A + + + +P GI+DSK+++ KR L E + AI I I+ Sbjct: 5 GIDEAGKGPVLGPMIAACVCVPDESVLPEGIDDSKRLTPAKRGRLSEALLGDEAIGIGIA 64 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQV-------IPRSALID--------GRSIPEDL 129 + S ID +L HA +V I + +D G+ +PE + Sbjct: 65 AVSPDRIDTPETDMNSLTVAAHAEAASEVVEPGMTGICDAGDVDAGRFVHRVGQRLPEGV 124 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVI 188 D + AAS++AKV RDR + Y + G GYP+ ++ + Sbjct: 125 SLSGE--HGADEHHAIVGAASVVAKVERDRRVAALEAAYGEVG----SGYPSDPTTREFL 178 Query: 189 KEK----GPSCI-HRLTFRP 203 E G R +++ Sbjct: 179 AEYVAENGELPECARASWKT 198 >gi|66817316|ref|XP_642511.1| hypothetical protein DDB_G0277705 [Dictyostelium discoideum AX4] gi|60470610|gb|EAL68588.1| hypothetical protein DDB_G0277705 [Dictyostelium discoideum AX4] Length = 507 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 31/206 (15%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GIND 59 +++ +P + + +DE G+GAL GP+ ++ ++LD + + G+ D Sbjct: 114 DNLMVQPKTSYKDKLEVFEEVLSISMDEAGKGALLGPLFISCVVLDDESEKYLKSMGVTD 173 Query: 60 SKKISHKKREELYEKITSSAIIS-ISSASHQYIDK----HNIHKATLDAIYHAV-ENLQV 113 SKK+S K+RE LY+ I A+ + + ID+ H +++ + Y + +++ Sbjct: 174 SKKLSPKRREYLYDIIIEHALYYQTIILTSEKIDQRRELHTMNQIETNLFYQLIKDSINN 233 Query: 114 IP----RSALIDG-------------RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVT 156 +P +ID P L Q + K D +S+ AASIIAKV Sbjct: 234 LPKNQQCKIIIDSIEMNTQKYSQPFKMEFPPPL-YQIYCETKADHKFISVGAASIIAKVE 292 Query: 157 RDRLMRIAHKKYPDYGFDSHVGYPTA 182 RDR M+ GYP+ Sbjct: 293 RDRWMKQLETNTSHI---IGSGYPSD 315 >gi|313609082|gb|EFR84793.1| ribonuclease HII [Listeria monocytogenes FSL F2-208] Length = 110 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 45/103 (43%), Positives = 64/103 (62%), Gaps = 2/103 (1%) Query: 104 IYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163 + A++ LQ P LID P ++IKGD+ S+SIAAASIIAKVTRDRLM++ Sbjct: 1 MRAALDQLQPEPDFVLIDAM--PLKYTEAELSLIKGDTKSISIAAASIIAKVTRDRLMQM 58 Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 + YP Y F +++GY T KH + G IHR++F P+++ Sbjct: 59 YDETYPGYDFANNMGYGTKKHLHGLDTIGICPIHRISFAPVKD 101 >gi|312067297|ref|XP_003136676.1| ribonuclease HI large subunit [Loa loa] gi|307768160|gb|EFO27394.1| ribonuclease HI large subunit [Loa loa] Length = 303 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 58/224 (25%), Positives = 88/224 (39%), Gaps = 49/224 (21%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKIT-- 76 M V GIDE GRG + GP+V A + NN + G++DSK ++ KRE+++E++ Sbjct: 28 MPCVVGIDEAGRGPVLGPMVYACAVTLVNNENILLEMGVDDSKVLTEAKREKIFERMEGD 87 Query: 77 --------SSAIISISSASHQY-------IDKHNIHKATLDAIYHAVENLQVIPRSALID 121 + IS S ++K + AT N+ V+ Sbjct: 88 NMSELFGYAHCSISAQMISAAMLGRTKCSLNKLSHDCATELLKLAIDNNINVVEVYVDTV 147 Query: 122 GRSIP------EDLP-CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP----- 169 G P + P Q K D+ ++AASI+AKV RDR +R +P Sbjct: 148 GPKGPYQAMLHKKFPDMQIIVSEKADAKFPIVSAASIVAKVKRDRALRNW--TFPEGIIN 205 Query: 170 ----DYGFDSHVGYP----TA-KHQQVIKE-KGPSCIHRLTFRP 203 YG GYP T I G + R +++ Sbjct: 206 VPPNGYG----SGYPGDPNTKNFLLGAIDHVFGYPNLVRFSWKT 245 >gi|195470258|ref|XP_002087425.1| GE16128 [Drosophila yakuba] gi|194173526|gb|EDW87137.1| GE16128 [Drosophila yakuba] Length = 347 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 82/220 (37%), Gaps = 45/220 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI--- 80 G+DE GRG + GP+V G DSK+++ +KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESKKALEDLGCADSKQLTEEKRDIIFNDINTKDYATS 133 Query: 81 ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126 ++ S I + K +L+ I A++ V +D P Sbjct: 134 CIGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192 Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173 E + K DS ++AASI AKVTRD +++ K+P+ G Sbjct: 193 EKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--KFPE-GLVIKD 249 Query: 174 -DSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 GYP ++ + E G + R ++ N Sbjct: 250 NAFGSGYPGDPVTRRFLTEHIDLVFGFPRLVRFSWSTAEN 289 >gi|329571609|gb|EGG53290.1| putative ribonuclease HII [Enterococcus faecalis TX1467] Length = 137 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 38/76 (50%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E +K +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KKRE LY Sbjct: 61 QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY 120 Query: 73 EKITSSAI-ISISSAS 87 +I A+ I + A Sbjct: 121 NQIQEQAVAIGLGIAD 136 >gi|284164032|ref|YP_003402311.1| ribonuclease HII [Haloterrigena turkmenica DSM 5511] gi|284013687|gb|ADB59638.1| ribonuclease HII [Haloterrigena turkmenica DSM 5511] Length = 228 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 52/217 (23%), Positives = 82/217 (37%), Gaps = 41/217 (18%) Query: 28 GIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSA--IISIS 84 G+DE G+G G + AA+ DP +P GI DSK++S ++REEL I + ++ Sbjct: 4 GVDEAGKGPALGSMFAAAVHCEDPTALPDGIADSKRLSPERREELAAAIREDDGIRVGVA 63 Query: 85 SASHQYIDKHNIHKATLDAIYHA--------VENLQVIPRSALIDGRSIPED-------- 128 + ID +L HA + L+ P + L D + Sbjct: 64 EITPARIDDPETDMNSLAVAAHAEAIDGALEADALETAPITGLCDACDTDAERFARRVTD 123 Query: 129 ------------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 L A D S + AAS++AKV RD + +Y G Sbjct: 124 ACTDLFADASSALEINIEARHGADDESPIVGAASVVAKVERDAHVAALADEYGPVG---- 179 Query: 177 VGYP----TAKHQQ-VIKEKG-PSCIHRLTFRPLRNL 207 GYP T + + + E G R ++ ++ Sbjct: 180 SGYPNDPNTREFLESYVGEYGDLPPCARESWSTCEDV 216 >gi|289192478|ref|YP_003458419.1| ribonuclease HII [Methanocaldococcus sp. FS406-22] gi|288938928|gb|ADC69683.1| ribonuclease HII [Methanocaldococcus sp. FS406-22] Length = 230 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 88/222 (39%), Gaps = 42/222 (18%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSSA 79 V GIDE GRG + GP+VV A + + G+ DSK+++ KR L + + Sbjct: 1 MIVIGIDEAGRGPVLGPMVVCAFAIEKDKEEELKKLGVRDSKELTKNKRAYLKKLLEDLG 60 Query: 80 IISISSASHQYIDKH----NIHKATLDAIYHAVENL-----------QVIPRSALIDGRS 124 + + I++ N+++ ++A ENL ++ + + + Sbjct: 61 YVEKLILEAEKINQLMSTINLNEIEINAFSKVAENLIEKLGIKDEKIEIYLDACSTNAKK 120 Query: 125 IPED-------------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 D L + A K D+ ++AASIIAK RD ++ K Y D Sbjct: 121 FENDFKEKLDNIIKERNLNVKIIAEHKADAKYSVVSAASIIAKAERDEIIDNYKKIYGDI 180 Query: 172 GFDSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207 G GYP+ K + ++ I R ++ + + Sbjct: 181 G----SGYPSDPKTIKFLENYFKKHKKLPDIARTHWKTCKRI 218 >gi|134114978|ref|XP_773787.1| hypothetical protein CNBH2390 [Cryptococcus neoformans var. neoformans B-3501A] gi|50256415|gb|EAL19140.1| hypothetical protein CNBH2390 [Cryptococcus neoformans var. neoformans B-3501A] Length = 326 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 88/247 (35%), Gaps = 61/247 (24%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYE--KI 75 + GIDE GRG + GP+V AA + P G +DSK +S + R+ L+E + Sbjct: 34 GEGWIMGIDEAGRGPVLGPMVYAAAYCPLSFKPILESIGFDDSKALSAETRQTLWESFDV 93 Query: 76 TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL---------------- 119 S S+ S Q I + + K ++ A + + ++AL Sbjct: 94 HPPLCYSSSTLSPQDISSNMLRKVPINLNRQAEDATVGLIQAALNRGINVTEASFSCSLA 153 Query: 120 ------------IDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRD 158 +D + A+ K DS+ + AASI+AKVTRD Sbjct: 154 ASCWLTICLKCYVDALGPAPQWQARLTAIFPTIKFTVCPKADSLFKIVGAASIVAKVTRD 213 Query: 159 RLMRIAHKKYPDYGFDSH------------VGYPTAKHQQVIKE------KGPSCIHRLT 200 R + +H GYP+ Q + G I R + Sbjct: 214 RYVHGWVDPEDVIHSATHIKSQDEEEVIRGSGYPSDPKTQAYLKGSIDPVFGYKGIVRFS 273 Query: 201 FRPLRNL 207 + ++ L Sbjct: 274 WATVKVL 280 >gi|225464178|ref|XP_002269817.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] gi|296086584|emb|CBI32219.3| unnamed protein product [Vitis vinifera] Length = 297 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 52/210 (24%), Positives = 84/210 (40%), Gaps = 33/210 (15%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIIS 82 GIDE GRG + GP+V + + DSK + +KREEL+E + + I Sbjct: 17 MGIDEAGRGPVLGPMVYGCLYCARSYHNTLSTLNFADSKTLKEEKREELFENLKADESIG 76 Query: 83 IS---------SASHQYIDKHNIHKATLDAIYHA---VENLQVIPRSALIDGR------- 123 + SA +K N+++ + D+ V N+ V+ +D Sbjct: 77 WAVDVIDPWELSAKMLKKNKINLNEISHDSAIGLITRVLNMGVLLTEVYVDTVGDAEKYR 136 Query: 124 -SIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--VGY 179 + E P F V K DS+ ++ ASI+AKVTRDR +R + GY Sbjct: 137 IKLSERFPAVKFVVAKKADSLYPVVSGASIVAKVTRDRALRDWVLVETAENMHRNFGSGY 196 Query: 180 P-TAKHQQVIKEK-----GPSCIHRLTFRP 203 P + ++ G + R ++ Sbjct: 197 PGDPVTKSWLQHHKHSVFGFPTLVRFSWGT 226 >gi|312208153|pdb|3P56|A Chain A, The Structure Of The Human Rnase H2 Complex Defines Key Interaction Interfaces Relevant To Enzyme Function And Human Disease gi|312208156|pdb|3P56|D Chain D, The Structure Of The Human Rnase H2 Complex Defines Key Interaction Interfaces Relevant To Enzyme Function And Human Disease Length = 299 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 48/212 (22%), Positives = 81/212 (38%), Gaps = 33/212 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80 V G+ E GRG + GP+V A + + DSK + +RE L+ K+ + Sbjct: 29 CVLGVAEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDF 88 Query: 81 ISIS--SASHQYID-------KHNIHKATLD---AIYHAVENLQVIPRSALIDGRSIPED 128 + + S I K+N++ + D + + V +D +PE Sbjct: 89 VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPET 148 Query: 129 L---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHV 177 + K ++ ++AASI AKV RD+ ++ +K D D Sbjct: 149 YQARLQQSFPGIEVTVKAKAAALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGS 208 Query: 178 GYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203 GYP K + +KE G R ++R Sbjct: 209 GYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRT 240 >gi|223967509|emb|CAR93485.1| CG13690-PA [Drosophila melanogaster] Length = 347 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 82/220 (37%), Gaps = 45/220 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSAI- 80 G+DE GRG + GP+V G DSK+++ +KR+ ++ I A Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEEKRDIIFNDINTKEYATS 133 Query: 81 ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126 ++ S I + K +L+ I A++ V +D P Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192 Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173 E + K DS ++AASI AKVTRD +++ +P+ G Sbjct: 193 EKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKD 249 Query: 174 -DSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 + GYP ++ + E G + R ++ N Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289 >gi|71747330|ref|XP_822720.1| ribonuclease HII [Trypanosoma brucei TREU927] gi|70832388|gb|EAN77892.1| ribonuclease HII, putative [Trypanosoma brucei] Length = 477 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 9/105 (8%) Query: 108 VENLQVIPRSALIDGRSIPEDL---------PCQAFAVIKGDSISLSIAAASIIAKVTRD 158 + V P L+DG + P + +I+GD SL+IAAAS +AKV+RD Sbjct: 355 FDAEPVQPPLVLVDGHTAPYETVSVFTDVQTGGCVQPIIEGDKRSLTIAAASCLAKVSRD 414 Query: 159 RLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +M YP Y F + GYP H + +K+ G S IHR ++RP Sbjct: 415 EIMDYLDPLYPKYHFAENKGYPVDHHMRAVKKHGLSSIHRRSYRP 459 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 13/69 (18%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAII-------------LDPNNIPFGINDSKKISHKK 67 K + G DE GRG LAGPVV AA+ L + F I DSK +S + Sbjct: 128 KETFLTIGCDEAGRGPLAGPVVGAAVCRIPRSSFNNDLKALYDADEEFQIFDSKSVSETQ 187 Query: 68 REELYEKIT 76 R+ +Y IT Sbjct: 188 RKVVYNNIT 196 >gi|195147238|ref|XP_002014587.1| GL19264 [Drosophila persimilis] gi|194106540|gb|EDW28583.1| GL19264 [Drosophila persimilis] Length = 340 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 84/222 (37%), Gaps = 49/222 (22%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKI------TS 77 G+DE GRG + GP+V + I G DSK+++ +KR+ ++ ++ S Sbjct: 67 GVDEAGRGPVLGPMVYGISYCPLESKQALIDLGCADSKQLTEEKRDVIFNELNTLEYANS 126 Query: 78 SAIISISSASHQYIDKHNIHKA-----------TLDAIYHAVENLQVIPRSALIDGRSIP 126 ++ S I +A + I A++ V +D P Sbjct: 127 CVGWAVEIISPNVISTSMYRRAKCSLNEVSMESAMGLIQQAIDA-GVNIAEVYVDTVGPP 185 Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173 E + K DS ++AASI AKVTRD +++ ++P+ G Sbjct: 186 EKYQEKLLRRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--RFPE-GLVIKD 242 Query: 174 -DSHVGYP----TA----KHQQVIKEKGPSCIHRLTFRPLRN 206 GYP T +H ++ G + R ++ N Sbjct: 243 NAFGSGYPGDPVTKRFLTEHIDLV--FGFPRLVRFSWSTAEN 282 >gi|198473777|ref|XP_001356439.2| GA12461 [Drosophila pseudoobscura pseudoobscura] gi|198138103|gb|EAL33503.2| GA12461 [Drosophila pseudoobscura pseudoobscura] Length = 340 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 84/222 (37%), Gaps = 49/222 (22%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKI------TS 77 G+DE GRG + GP+V + I G DSK+++ +KR+ ++ ++ S Sbjct: 67 GVDEAGRGPVLGPMVYGISYCPLESKQALIDLGCADSKQLTEEKRDVIFNEMNTLEYANS 126 Query: 78 SAIISISSASHQYIDKHNIHKA-----------TLDAIYHAVENLQVIPRSALIDGRSIP 126 ++ S I +A + I A++ V +D P Sbjct: 127 CVGWAVEIISPNVISTSMYRRAKCSLNEVSMESAMGLIQQAIDA-GVNIAEVYVDTVGPP 185 Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173 E + K DS ++AASI AKVTRD +++ ++P+ G Sbjct: 186 EKYQEKLLRRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--RFPE-GLVIKD 242 Query: 174 -DSHVGYP----TA----KHQQVIKEKGPSCIHRLTFRPLRN 206 GYP T +H ++ G + R ++ N Sbjct: 243 NAFGSGYPGDPVTKRFLTEHIDLV--FGFPRLVRFSWSTAEN 282 >gi|116806104|emb|CAL26435.1| CG13690 [Drosophila simulans] Length = 347 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 45/220 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSAI- 80 G+DE GRG + GP+V G DSK+++ KR+ ++ I A Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESKKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 81 ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126 ++ S I + K +L+ I A++ V +D P Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192 Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173 E + K DS ++AASI AKVTRD +++ +P+ G Sbjct: 193 EKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKD 249 Query: 174 -DSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 + GYP ++ + E G + R ++ N Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289 >gi|328872786|gb|EGG21153.1| ribonuclease H2 subunit A [Dictyostelium fasciculatum] Length = 303 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 54/219 (24%), Positives = 88/219 (40%), Gaps = 43/219 (19%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI 80 + GIDE GRG + GP+V A I NDSKK++ ++RE+L+ KI S Sbjct: 43 YIMGIDEAGRGPVLGPLVYGACFAPLKEIETIKKMKFNDSKKLTEQQREQLFIKIIKSPD 102 Query: 81 ISISSAS----HQYIDKHN----------IHKATLDAIYHAVENLQVIPRSALIDGR--- 123 + I S +Y+ + I + + V + + +D Sbjct: 103 V-IGFVSDINTPEYLSEKMCAKMPTSLDVISHGSAFKMIRTVLDRGYNVQELYLDTVGPA 161 Query: 124 -----SIPEDLPCQAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY----- 171 + P V+ K DSI ++A SI+AKV RD L+ A+ + Y Sbjct: 162 LKYQTKLQIAFPSIGKIVVSSKADSIYPIVSAGSIVAKVLRDVLI--ANTSFAAYQGVEI 219 Query: 172 GFDSHVGYPT-AKHQQVIKEK-----GPSC-IHRLTFRP 203 D GYP+ ++ ++E G I R +++ Sbjct: 220 SRDFGSGYPSDPSTKKWLREHRDNVFGYPDNIIRFSWKT 258 >gi|261332495|emb|CBH15490.1| ribonuclease HII, putative [Trypanosoma brucei gambiense DAL972] Length = 477 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 9/105 (8%) Query: 108 VENLQVIPRSALIDGRSIPEDLPCQ---------AFAVIKGDSISLSIAAASIIAKVTRD 158 + V P L+DG + P + +I+GD SL+IAAAS +AKV+RD Sbjct: 355 FDAEPVQPPLVLVDGHTAPYETVAVFTDVQTGGCVQPIIEGDKRSLTIAAASCLAKVSRD 414 Query: 159 RLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +M YP Y F + GYP H + +K+ G S IHR ++RP Sbjct: 415 EIMDYLDPLYPKYHFAENKGYPVDHHMRAVKKHGLSSIHRRSYRP 459 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 13/69 (18%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAII-------------LDPNNIPFGINDSKKISHKK 67 K + G DE GRG LAGPVV AA+ L + F I DSK +S + Sbjct: 128 KETFLTIGCDEAGRGPLAGPVVGAAVCRIPRSSFNNDLKALYDADEEFQIFDSKSVSETQ 187 Query: 68 REELYEKIT 76 R+ +Y IT Sbjct: 188 RKVVYNNIT 196 >gi|84999888|ref|XP_954665.1| ribonuclease h1 large subunit [Theileria annulata] gi|65305660|emb|CAI73985.1| ribonuclease h1 large subunit, putative [Theileria annulata] Length = 277 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 57/229 (24%), Positives = 88/229 (38%), Gaps = 49/229 (21%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-------IPFGINDSKKISHKKREE-- 70 K+ + + GIDE GRG + GP+V + ++DSKK+S RE Sbjct: 19 SKSDYVILGIDEAGRGPVLGPMVYGGFFCTKGDNCNSILKNKIKVDDSKKLSESMRENKF 78 Query: 71 ------------LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 + E IT IS + + + I T +I V + + Sbjct: 79 YQLNDPDHPFGVVAEVITPQ-YISYKMLQREKYNLNEISHDTAISIIRHVLSHGYNLKEV 137 Query: 119 LIDGR--------SIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 ID + + P F+V K DSI +++AASI+AKV RD +++ Sbjct: 138 YIDAVGTVNKYESKLSKMFPKIQFSVREKADSIYPTVSAASIVAKVIRDNIIKTWK---- 193 Query: 170 DYGFD---SHVGYP----TA----KHQQVIKEKGPSCIHRLTFRPLRNL 207 + F+ GYP T K+ I G I R ++ NL Sbjct: 194 -FDFEVENIGSGYPGDPYTKDFLTKNMDKI--FGFPDIVRFSWSTASNL 239 >gi|297527144|ref|YP_003669168.1| ribonuclease HII [Staphylothermus hellenicus DSM 12710] gi|297256060|gb|ADI32269.1| ribonuclease HII [Staphylothermus hellenicus DSM 12710] Length = 244 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 86/207 (41%), Gaps = 31/207 (14%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIIS 82 G+DE GRG L G +V+A +I+ N I G+ DSK+++ R L +KI A + Sbjct: 10 IGVDEAGRGPLIGDLVIAILIISRNKIEKLISIGVKDSKQLTRHTRLSLAKKILKLADSA 69 Query: 83 -ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS-----ALIDGRSIPEDLPC----- 131 I S + ID +NI++ + I A++ + ID ++ Sbjct: 70 LIIYISPEIIDSYNINRIIAEKIILALKLFSPVINHYRTASIYIDEIKGYKNYILANLSK 129 Query: 132 ------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA-KH 184 + D ++AASI+AK RD+ + K Y + G GYP+ Sbjct: 130 YINNIEEYVMEPNADQKYPVVSAASILAKTIRDKNIDFLKKIYGNLG----SGYPSDRVT 185 Query: 185 QQVIK-----EKGPSCIHRLTFRPLRN 206 + EK P I R T+ LR Sbjct: 186 INWLIKTYNGEKEPPLIIRRTWSTLRK 212 >gi|300702211|ref|XP_002995135.1| hypothetical protein NCER_102091 [Nosema ceranae BRL01] gi|239603960|gb|EEQ81464.1| hypothetical protein NCER_102091 [Nosema ceranae BRL01] Length = 235 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 43/214 (20%), Positives = 91/214 (42%), Gaps = 30/214 (14%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 + +++ + + G+DE GRG + G +V ++ + +N+P + DSK ++ K R +++ + Sbjct: 9 SSLKKSDKRVIVGVDEAGRGPVIGYMVYCVMVFEVDNVPKNLKDSKMLTEKMRNDIFVTL 68 Query: 76 TSSAIISISSASHQYIDKHNIHKATLD------------AIYHAVENLQVIPRSALIDGR 123 + ++ YI + L+ + +A N++ I A+ Sbjct: 69 KDY-NYAYTALHPSYITTKMLSNVNLNDISWNTVLNLLKLVCNAYTNIEGIFIDAIGTCD 127 Query: 124 SIPE----DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 + E ++ + K DS ++ ASI+AKVTRD L+ + GY Sbjct: 128 KLKEFLELNIKHKCTVESKADSKYPVVSGASIVAKVTRDDLLSK-------FNISFGSGY 180 Query: 180 PT-AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207 P+ ++ + + G R T+ +N+ Sbjct: 181 PSDPVTKKWLTKEVNYIFGWGKSVRYTWNTAKNI 214 >gi|195350095|ref|XP_002041577.1| GM16670 [Drosophila sechellia] gi|194123350|gb|EDW45393.1| GM16670 [Drosophila sechellia] Length = 347 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 45/220 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKI--TSSAI- 80 G+DE GRG + GP+V G DSK+++ KR+ ++ I A Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLERNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 81 ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126 ++ S I + K +L+ I A++ V +D P Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192 Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173 E + K DS ++AASI AKVTRD +++ +P+ G Sbjct: 193 EKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKD 249 Query: 174 -DSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 + GYP ++ + E G + R ++ N Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289 >gi|145238902|ref|XP_001392098.1| ribonuclease H2 subunit A [Aspergillus niger CBS 513.88] gi|134076599|emb|CAK45152.1| unnamed protein product [Aspergillus niger] Length = 352 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 87/245 (35%), Gaps = 52/245 (21%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP------FGINDSKKISHKKR 68 E + + G+DE GRG + GP+V +A L + + NDSK ++ R Sbjct: 57 EPTTNSSPNYLILGVDEAGRGPVLGPMVYSAFYLPQDLHHTLLTRDYSFNDSKALTPGVR 116 Query: 69 EELYEKIT-------SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAV 108 L + + S ++ S + I + AT++ I + Sbjct: 117 ANLMKLLCTPGNPLHESCGWAVKLLSARDISSGMMRPGTGAYNLNAQAMDATIELIRGII 176 Query: 109 ENLQVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDR 159 E+ + R ID P + + K DS+ ++AAS+ AKVTRD Sbjct: 177 EDRNMDVREVYIDTIGNPATYQQKLEKIFPSLRITVAKKADSLYPCVSAASVAAKVTRDV 236 Query: 160 LMRIAHK-KYPDYGFDS----------HVGYPTAKHQQVIKEKGPSCIH------RLTFR 202 + + H+ Y D + GYP+ +K I R ++ Sbjct: 237 ALDLCHQAIYEDTHAEDSPRAVVPQSWGSGYPSDSKCANWLKKNMDPIFGWGNECRFSWG 296 Query: 203 PLRNL 207 + L Sbjct: 297 TAKEL 301 >gi|255640332|gb|ACU20454.1| unknown [Glycine max] Length = 219 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 50/201 (24%), Positives = 82/201 (40%), Gaps = 31/201 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI 80 V GIDE GRG + GP+V + + + DSK + +KREEL+E + + Sbjct: 14 CVMGIDEAGRGPVLGPMVYGCLYCSQSYLKTLSTLSFADSKTLKEEKREELFETLKLNDS 73 Query: 81 IS--ISSASHQYIDKHNI--HKATLDAIYHA--------VENLQVIPRSALIDG------ 122 I + + + + +K L+ I H+ V + V+ ID Sbjct: 74 IGWDVDVIDPRELSAKMLKKNKINLNEISHSSAMGLIDRVLKMGVLLTEVYIDTVGDAGK 133 Query: 123 --RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRI--AHKKYPDYGFDSHV 177 + P F V K DS+ ++ ASI+AKVTRDR R + + + Sbjct: 134 YEMKLSNSFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRASREWVLDETAENMQRNFGS 193 Query: 178 GYP-TAKHQQVIKEKGPSCIH 197 GYP + + +++ H Sbjct: 194 GYPGDPQTKSWLEDH---KHH 211 >gi|194853461|ref|XP_001968168.1| GG24650 [Drosophila erecta] gi|190660035|gb|EDV57227.1| GG24650 [Drosophila erecta] Length = 347 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 84/222 (37%), Gaps = 49/222 (22%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI--- 80 G+DE GRG + GP+V + G DSK+++ +KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESKKPLEDLGCADSKQLTEEKRDIIFNDINTKDYATS 133 Query: 81 ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126 ++ S I + K +L+ I A++ V +D P Sbjct: 134 CIGWAVEIISPSTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192 Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173 E + K DS ++AASI AKVTRD +++ K+P+ G Sbjct: 193 EKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--KFPE-GLVIKD 249 Query: 174 -DSHVGYP----TA----KHQQVIKEKGPSCIHRLTFRPLRN 206 GYP T +H ++ G + R ++ N Sbjct: 250 NAFGSGYPGDPVTKRFLAEHIDLV--FGFPRLVRFSWSTAEN 289 >gi|86171485|ref|XP_966221.1| ribonuclease HII, putative [Plasmodium falciparum 3D7] gi|46361187|emb|CAG25051.1| ribonuclease HII, putative [Plasmodium falciparum 3D7] Length = 288 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 58/221 (26%), Positives = 89/221 (40%), Gaps = 35/221 (15%) Query: 18 VREKNMWPV-AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELY 72 + E V GIDE GRG + GP+V + + + I+DSKKI+ RE+++ Sbjct: 9 LYEFGNEEVRLGIDEAGRGPVLGPMVYSGFYCNKEHEKLLKEMKIDDSKKITEADREKMF 68 Query: 73 EKITSSAI-------------ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 K+ +S + IS Q + + I T +I V N Sbjct: 69 VKLNNSKLPFGWRVHILLPQDISAKMLKKQKYNLNEISHDTAISIIEHVINRGCNLTEVF 128 Query: 120 IDGR---SIPEDLPCQAFAVIK------GDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 +D S+ E+ + F IK DS+ ++AASI AKVTRD L++ + P Sbjct: 129 VDTVGKASVYEEKLQKMFPHIKCTVKEKADSLYPVVSAASICAKVTRDFLLKKWKYEEPI 188 Query: 171 YGFD--SHVGYP-TAKHQQVIKE-----KGPSCIHRLTFRP 203 D GYP + +K G I R ++ Sbjct: 189 INIDNGFGSGYPGDPVTKNFLKNNFDSVFGFPSIVRFSWST 229 >gi|195575541|ref|XP_002077636.1| GD22959 [Drosophila simulans] gi|194189645|gb|EDX03221.1| GD22959 [Drosophila simulans] Length = 347 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 45/220 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSAI- 80 G+DE GRG + GP+V G DSK+++ KR+ ++ I A Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESKKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 81 ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126 ++ S I + K +L+ I A++ V +D P Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192 Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173 E + K DS ++AASI AKVTRD +++ +P+ G Sbjct: 193 EKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKD 249 Query: 174 -DSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 + GYP ++ + E G + R ++ N Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289 >gi|116806086|emb|CAL26426.1| CG13690 [Drosophila melanogaster] gi|223967493|emb|CAR93477.1| CG13690-PA [Drosophila melanogaster] gi|223967499|emb|CAR93480.1| CG13690-PA [Drosophila melanogaster] gi|223967501|emb|CAR93481.1| CG13690-PA [Drosophila melanogaster] Length = 347 Score = 111 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 45/220 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSAI- 80 G+DE GRG + GP+V G DSK+++ KR+ ++ I A Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 81 ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126 ++ S I + K +L+ I A++ V +D P Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192 Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173 E + K DS ++AASI AKVTRD +++ +P+ G Sbjct: 193 EKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKD 249 Query: 174 -DSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 + GYP ++ + E G + R ++ N Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289 >gi|195032708|ref|XP_001988545.1| GH10519 [Drosophila grimshawi] gi|193904545|gb|EDW03412.1| GH10519 [Drosophila grimshawi] Length = 334 Score = 111 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 86/222 (38%), Gaps = 49/222 (22%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKI--TSSA-- 79 G+DE GRG + GP+V + + G DSK+++ +KR+ ++ + A Sbjct: 61 GVDEAGRGPVLGPMVYGISYCPLESKSVLVELGCADSKQLTEEKRDIIFNDLNTLEYANS 120 Query: 80 --IISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126 ++ S I + K +L+ I HA++ V +D P Sbjct: 121 CIGWAVEIISPNVISSSMYRRTKCSLNEISMDSAMGLIQHAIDA-GVNIAEVYVDTVGPP 179 Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173 E + K DS ++AASI AKVTRD +++ ++P+ G Sbjct: 180 EKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--QFPE-GLLIKD 236 Query: 174 -DSHVGYP----TA----KHQQVIKEKGPSCIHRLTFRPLRN 206 GYP T +H ++ G + R ++ N Sbjct: 237 NAFGSGYPGDPVTKRFLTEHIDLV--FGFPRLVRFSWSTAEN 276 >gi|116806098|emb|CAL26432.1| CG13690 [Drosophila melanogaster] Length = 347 Score = 111 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 45/220 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSAI- 80 G+DE GRG + GP+V G DSK+++ KR+ ++ I A Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 81 ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126 ++ S I + K +L+ I A++ V +D P Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192 Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173 E + K DS ++AASI AKVTRD +++ +P+ G Sbjct: 193 EKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKD 249 Query: 174 -DSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 + GYP ++ + E G + R ++ N Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289 >gi|116806092|emb|CAL26429.1| CG13690 [Drosophila melanogaster] gi|116806094|emb|CAL26430.1| CG13690 [Drosophila melanogaster] gi|116806102|emb|CAL26434.1| CG13690 [Drosophila melanogaster] Length = 347 Score = 111 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 45/220 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSAI- 80 G+DE GRG + GP+V G DSK+++ KR+ ++ I A Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 81 ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126 ++ S I + K +L+ I A++ V +D P Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192 Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173 E + K DS ++AASI AKVTRD +++ +P+ G Sbjct: 193 EKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKD 249 Query: 174 -DSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 + GYP ++ + E G + R ++ N Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289 >gi|116806082|emb|CAL26424.1| CG13690 [Drosophila melanogaster] gi|116806084|emb|CAL26425.1| CG13690 [Drosophila melanogaster] gi|116806090|emb|CAL26428.1| CG13690 [Drosophila melanogaster] Length = 347 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 45/220 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSAI- 80 G+DE GRG + GP+V G DSK+++ KR+ ++ I A Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 81 ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126 ++ S I + K +L+ I A++ V +D P Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192 Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173 E + K DS ++AASI AKVTRD +++ +P+ G Sbjct: 193 EKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKD 249 Query: 174 -DSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 + GYP ++ + E G + R ++ N Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289 >gi|116806080|emb|CAL26423.1| CG13690 [Drosophila melanogaster] gi|116806088|emb|CAL26427.1| CG13690 [Drosophila melanogaster] gi|116806100|emb|CAL26433.1| CG13690 [Drosophila melanogaster] Length = 347 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 45/220 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSAI- 80 G+DE GRG + GP+V G DSK+++ KR+ ++ I A Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 81 ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126 ++ S I + K +L+ I A++ V +D P Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192 Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173 E + K DS ++AASI AKVTRD +++ +P+ G Sbjct: 193 EKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKD 249 Query: 174 -DSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 + GYP ++ + E G + R ++ N Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289 >gi|24580635|ref|NP_608521.1| CG13690 [Drosophila melanogaster] gi|11387117|sp|Q9VPP5|RNH2A_DROME RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|7296208|gb|AAF51500.1| CG13690 [Drosophila melanogaster] gi|66772719|gb|AAY55671.1| IP10665p [Drosophila melanogaster] gi|220951678|gb|ACL88382.1| CG13690-PA [synthetic construct] gi|223967491|emb|CAR93476.1| CG13690-PA [Drosophila melanogaster] gi|223967495|emb|CAR93478.1| CG13690-PA [Drosophila melanogaster] gi|223967497|emb|CAR93479.1| CG13690-PA [Drosophila melanogaster] gi|223967507|emb|CAR93484.1| CG13690-PA [Drosophila melanogaster] Length = 347 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 45/220 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSAI- 80 G+DE GRG + GP+V G DSK+++ KR+ ++ I A Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 81 ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126 ++ S I + K +L+ I A++ V +D P Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192 Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173 E + K DS ++AASI AKVTRD +++ +P+ G Sbjct: 193 EKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKD 249 Query: 174 -DSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 + GYP ++ + E G + R ++ N Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289 >gi|116806096|emb|CAL26431.1| CG13690 [Drosophila melanogaster] Length = 347 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 45/220 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSAI- 80 G+DE GRG + GP+V G DSK+++ KR+ ++ I A Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 81 ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126 ++ S I + K +L+ I A++ V +D P Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192 Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173 E + K DS ++AASI AKVTRD +++ +P+ G Sbjct: 193 EKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKD 249 Query: 174 -DSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 + GYP ++ + E G + R ++ N Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289 >gi|158297564|ref|XP_317779.3| AGAP007741-PA [Anopheles gambiae str. PEST] gi|157015256|gb|EAA12465.3| AGAP007741-PA [Anopheles gambiae str. PEST] Length = 342 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 48/212 (22%), Positives = 90/212 (42%), Gaps = 36/212 (16%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS----- 78 G+DE GRG + GP+V + G DSK+++ +KR+++++++ Sbjct: 69 GVDEAGRGPVLGPMVYGIAFCPLSKKDILKQLGFADSKQLTEEKRDQIFDEMNRKDFAKT 128 Query: 79 AI-ISISSASHQYID-------KHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPE 127 A+ ++ + S I KH++++ ++D+ + + V +D PE Sbjct: 129 ALGWAVEAISPNVISMCMLRRTKHSLNEVSMDSAIGLINSAIDAGVNIAEVYVDTVGPPE 188 Query: 128 DLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAH-KKYPDYG-FDSH 176 + A+ K DS ++AASI AKVTRD +++ ++ P+ Sbjct: 189 KYQAKLKAIFPKFKITVAKKADSTYPIVSAASIAAKVTRDHALKVWKFRERPNEEVTSFG 248 Query: 177 VGYP----TAKHQQVIKE-KGPSCIHRLTFRP 203 GYP T K I G + R ++ Sbjct: 249 SGYPGDPTTKKFLGEIDLVFGFPRLVRFSWST 280 >gi|268612465|pdb|3KIO|A Chain A, Mouse Rnase H2 Complex Length = 301 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 78/213 (36%), Gaps = 34/213 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80 V G+DE GRG + GP V A + + DSK ++ +RE L+ K Sbjct: 29 CVLGVDEAGRGPVLGPXVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKXEEDGD 88 Query: 81 ---ISISSASHQYID-------KHNIHKATLD---AIYHAVENLQVIPRSALIDGRSIPE 127 ++ S I K+N++ + D + + V +D PE Sbjct: 89 FVGWALDVLSPNLISTSXLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGXPE 148 Query: 128 DL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSH 176 + K DS+ ++AASI AKV RD+ ++ + D D Sbjct: 149 TYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYG 208 Query: 177 VGYPT-AKHQQVIKEK-----GPSCIHRLTFRP 203 GYP K + +++ G R ++ Sbjct: 209 SGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWST 241 >gi|223967505|emb|CAR93483.1| CG13690-PA [Drosophila melanogaster] Length = 347 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 45/220 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSAI- 80 G+DE GRG + GP+V G DSK+++ KR+ ++ I A Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEVLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 81 ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126 ++ S I + K +L+ I A++ V +D P Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192 Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173 E + K DS ++AASI AKVTRD +++ +P+ G Sbjct: 193 EKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKD 249 Query: 174 -DSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 + GYP ++ + E G + R ++ N Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289 >gi|327281022|ref|XP_003225249.1| PREDICTED: ribonuclease H2 subunit A-like [Anolis carolinensis] Length = 300 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 36/211 (17%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI---TSSAI 80 GIDE GRG + GP+V + + DSK ++ +RE+L+EK+ Sbjct: 32 GIDEAGRGPVLGPMVYGICYCPVARQGDLEAIKVADSKTLTEAQREQLFEKLDAAKDFVG 91 Query: 81 ISISSASHQYID-------KHNIHKATLD----AIYHAVENLQVIPRSALIDGRSIPEDL 129 ++ S +I K+N++ + D I HA+++ V +D E Sbjct: 92 WALHILSPNFISTSMQRRAKYNLNALSHDTAIGLIQHALDS-GVQVAEVFVDTVGPAEKY 150 Query: 130 ---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHVG 178 + K DS+ ++AASI AKV RDR+++ + + D G Sbjct: 151 QEKLKQQFPGLEVTVKPKADSLFPVVSAASICAKVARDRVVKNWKFVEALENVDSDYGSG 210 Query: 179 YPT-AKHQQVIKE-----KGPSCIHRLTFRP 203 YP K ++ + + G R ++ Sbjct: 211 YPNDPKTKEWLTQCLDPVFGFPQFVRFSWST 241 >gi|223967503|emb|CAR93482.1| CG13690-PA [Drosophila melanogaster] Length = 347 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 45/220 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSAI- 80 G+DE GRG + GP+V G DSK+++ KR+ ++ I A Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINAKEYATS 133 Query: 81 ---ISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126 ++ S I + K +L+ I A++ V +D P Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVNIAEVYVDTVGPP 192 Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173 E + K DS ++AASI AKVTRD +++ +P+ G Sbjct: 193 EKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKD 249 Query: 174 -DSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 + GYP ++ + E G + R ++ N Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289 >gi|91091718|ref|XP_966789.1| PREDICTED: similar to ribonuclease hi large subunit [Tribolium castaneum] gi|270001067|gb|EEZ97514.1| hypothetical protein TcasGA2_TC011359 [Tribolium castaneum] Length = 306 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 87/224 (38%), Gaps = 49/224 (21%) Query: 21 KNMWPVAGIDEVGRGALAGPVVV--AAIILDPNNIP--FGINDSKKISHKKREELYEKIT 76 K+ + GIDE GRG + GP+V A L+ +P G DSK ++ + R+ ++ KI Sbjct: 34 KDFPCILGIDEAGRGPVLGPMVYGTAFCPLNEATLPDSLGCADSKALNEESRDVIFSKIC 93 Query: 77 SSAI--ISISSASHQYIDKHNIH-----------KATLDAIYHAVENLQVIPRSALIDGR 123 ++ + + I + A ++ I A++ V +D Sbjct: 94 ANRKMGWGVEVIAPNSICNSMLSRQKYSLNQVSMDAAINLIKMALKG-GVNLSHVYVDTV 152 Query: 124 SIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF- 173 PE ++ K DS ++AASI AKVTRD ++ +GF Sbjct: 153 GPPEKYQAYLKSLFPNVGVTVAKKADSTFPIVSAASICAKVTRDYALK-------GWGFG 205 Query: 174 --------DSHVGYP----TAKHQQVIKE--KGPSCIHRLTFRP 203 + GYP T K Q ++ G + R ++ Sbjct: 206 EGLQAGHEEFGSGYPGDPNTKKFLQNYRDPVFGYPHLVRFSWST 249 >gi|530464|emb|CAA83799.1| ribonuclease HII [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 114 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 40/114 (35%), Positives = 66/114 (57%), Gaps = 1/114 (0%) Query: 39 GPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIH 97 GP+VVA++IL P+ I DSKK++ K R+ L+++I ++ + I S + +D+ N Sbjct: 1 GPLVVASVILKPDYFNPLIKDSKKLNPKTRQVLFDEIINNCLDYQIMIISSKQVDELNPL 60 Query: 98 KATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASI 151 +A+L + NL++ P ALIDG + ++IKGD + SIA +SI Sbjct: 61 QASLLGFKTTISNLKIXPDLALIDGNQNINLENIKTLSIIKGDDNNFSIACSSI 114 >gi|195456019|ref|XP_002074967.1| GK22869 [Drosophila willistoni] gi|194171052|gb|EDW85953.1| GK22869 [Drosophila willistoni] Length = 336 Score = 110 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 85/220 (38%), Gaps = 45/220 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKI------TS 77 G+DE GRG + GP+V + I G DSK+++ +KR+ ++ ++ T Sbjct: 63 GVDEAGRGPVLGPMVYGISYCPLESKQALIDLGCADSKQLTEEKRDIIFNELNTLDYATE 122 Query: 78 SAIISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126 ++ S I + K +L+ I A++ V +D P Sbjct: 123 CIGWAVEIISPNVISSSMYRRSKCSLNEVSMDSAMGLIQQAIDA-GVQIAEVYVDTVGPP 181 Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173 E + K DS ++AASI AKVTRD +++ K+P+ G Sbjct: 182 EKYQEKLLRRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--KFPE-GLVIKD 238 Query: 174 -DSHVGYP----TAKHQ-QVIKE-KGPSCIHRLTFRPLRN 206 GYP T + + I G + R ++ N Sbjct: 239 NAFGSGYPGDPVTKRFLVENIDLVFGFPRLVRFSWSTAEN 278 >gi|126322781|ref|XP_001362490.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 304 Score = 110 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 78/210 (37%), Gaps = 34/210 (16%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKI---TSSAI 80 GIDE GRG + GP+V + + + DSK +S +RE L+ K+ Sbjct: 32 GIDEAGRGPVLGPMVYGICFCPLSRLGDLEALKVADSKTLSEAERERLFGKLDQARDFVG 91 Query: 81 ISISSASHQYIDKHNIHKA----------TLDAIYHAVENLQVIPRSALIDGR------- 123 ++ S I +A T A+ + V +D Sbjct: 92 WALDILSPNLISNSMQRRAKYNLNSLSHDTAMALVQLALDQGVKVTQVFVDTVGPADKYQ 151 Query: 124 -SIPEDLP-CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHVGY 179 + E P + K DS+ ++AASI AKV RD++++ + D D GY Sbjct: 152 QKLQERFPELEVTVRPKADSLFPVVSAASICAKVARDQVVKRWKFLEDLGDLKMDYGSGY 211 Query: 180 PT-AKHQQVIKE-----KGPSCIHRLTFRP 203 P K ++ + + G R ++ Sbjct: 212 PNDPKTKEWLSQCLDPVFGFPQFVRFSWST 241 >gi|213029433|ref|ZP_03343880.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 92 Score = 110 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 41/82 (50%), Positives = 53/82 (64%), Gaps = 1/82 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LY++I A+ S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLSLYDEIKEKALSWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIY 105 A ID+ NI AT+ A+ Sbjct: 71 GRAEAHEIDELNILHATMLAMQ 92 >gi|281205710|gb|EFA79899.1| hypothetical protein PPL_06719 [Polysphondylium pallidum PN500] Length = 589 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 94/246 (38%), Gaps = 63/246 (25%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKIT 76 KN G+DE G+GA+ GP+V+AA+ LD G+ DSKK+S ++REELY+ I Sbjct: 261 KNDMSYIGVDEAGKGAVLGPLVIAAVSLDSAAEQYLKAAGVKDSKKLSAQRREELYDIIK 320 Query: 77 SSAII-SISSASHQYIDKHNIHKAT--------LDAIYHAVENLQVIPRS---------- 117 A+ +I + ID + L+ I ++ +L+ P+ Sbjct: 321 ERALYTTIYILEARDIDIRRKTQTLNKIESDIFLELIQRSLNHLKSNPQEFIEEVEENNN 380 Query: 118 ALIDGRSIPED----------------------------LPCQAFAVI---KGDSISLSI 146 ++ G + P VI + DS +S Sbjct: 381 IVVGGEQFNNNSNKPKKYKIQLDSLESNTGKFSLPFRDAFPAPEHTVICENQADSKYVST 440 Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK-HQQVIKEK-----GPSCIHRLT 200 AASIIAKV RDR + K GYP+ I+ RL+ Sbjct: 441 GAASIIAKVERDRAIAALEKS---VNTPVGCGYPSDATTLTFIESYYQRNGNDHPDVRLS 497 Query: 201 FRPLRN 206 ++ L N Sbjct: 498 WKTLTN 503 >gi|256078514|ref|XP_002575540.1| ribonuclease hi large subunit [Schistosoma mansoni] gi|238660781|emb|CAZ31773.1| ribonuclease hi large subunit, putative [Schistosoma mansoni] Length = 290 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 35/194 (18%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII-- 81 GIDE GRG + GP+V A + + + G+ DSK ++ +RE+L +++ + Sbjct: 3 GIDEAGRGPVLGPMVYACALSPISQLNELETIGLADSKTLNENQREKLLKEMLNKCDWIS 62 Query: 82 -SISSASHQYIDKHNI--HKATLDAIYH--AVENLQVIPR------SALIDGRSIPEDLP 130 + S YI + + K +L+ I H A++ +Q + +D E Sbjct: 63 AVVHVISPVYITEKMLDKSKTSLNVISHDSAIQLIQSVLDSGVNLVEVYVDTVGKAEHYE 122 Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY----PDYGFDSHV 177 + + K D ++AASI AKVTRDR++++ K+ P+ G Sbjct: 123 TKLQNLFPQLKIRVESKADDTYPIVSAASIFAKVTRDRVLQMWPKEERGSVPE-GTGLGS 181 Query: 178 GYP----TAKHQQV 187 GYP T + + Sbjct: 182 GYPGDPVTKSYLRA 195 >gi|291229986|ref|XP_002734939.1| PREDICTED: RNase H family member (rnh-2)-like [Saccoglossus kowalevskii] Length = 303 Score = 110 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 50/213 (23%), Positives = 82/213 (38%), Gaps = 40/213 (18%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII-- 81 GIDE GRG + GP+V + G DSK +S ++REEL+ KI + + Sbjct: 34 GIDEAGRGPVLGPMVYGICYCPISKNEQLAEMGFADSKTLSEEQREELFTKIYEANQVLG 93 Query: 82 ------SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR------SALIDGRS----- 124 S + S+ + T+ A++ L++ +D Sbjct: 94 YKMEVLSPNIISNSMFRRTKCSLNTVSKDS-AIKLLRLTIEEGANIKEVYVDTVGDASKY 152 Query: 125 ---IPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG----FDSH 176 + E P V K D+ ++AASI AKV RDR ++ ++P++ Sbjct: 153 QAYLKELFPDLEITVTPKADAKFPIVSAASICAKVCRDRAVKSW--QFPEFDEINETPYG 210 Query: 177 VGYP----TAKHQQVIKE--KGPSCIHRLTFRP 203 GYP T + + E G R ++ Sbjct: 211 SGYPNDPATKQWLSNVMEPVFGFPRFVRFSWST 243 >gi|290558916|gb|EFD92304.1| ribonuclease HII [Candidatus Parvarchaeum acidophilus ARMAN-5] gi|326422570|gb|EGD71965.1| Ribonuclease HII [Candidatus Parvarchaeum acidophilus ARMAN-5_'5-way FS'] Length = 218 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 53/208 (25%), Positives = 86/208 (41%), Gaps = 31/208 (14%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITSSAI-I 81 GIDE GRG + GP+++A + ++ + G+ DSK +S K+ L +I S Sbjct: 4 IGIDEAGRGPVIGPMIIAGVGINEDISNEFKSIGVKDSKLLSIKRIYLLEREIKKSTQNY 63 Query: 82 SISSASHQYIDKHNIHKATLDA---IYHAVENLQVIPRSALIDG-----RSIPEDLPCQA 133 S + ID L+ AV + +ID + I E L Sbjct: 64 KTIKISSEEIDNRFEKGKNLNYLELDSMAVIANDLSGEKVIIDSPSSNTKKIKEYLQNLI 123 Query: 134 FAVIK-----GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----TAKH 184 I D + ++AASI+AK R+R + K + G+D GYP T + Sbjct: 124 KRKIIIAENYADRNHVEVSAASILAKSEREREVDKIKKIF---GYDFGSGYPSDPKTVEF 180 Query: 185 QQVIKEKG------PSCIHRLTFRPLRN 206 ++IKE G + R ++ L++ Sbjct: 181 LKIIKENGKIDESPYKELIRKSWSTLQS 208 >gi|256811096|ref|YP_003128465.1| ribonuclease HII [Methanocaldococcus fervens AG86] gi|256794296|gb|ACV24965.1| ribonuclease HII [Methanocaldococcus fervens AG86] Length = 230 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 37/199 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKI----TS 77 + GIDE GRG + GP+V+ + + G+ DSK+++ KR L + + S Sbjct: 3 IIGIDEAGRGPVLGPMVICGYAIKKDKEEDLKKLGVKDSKELTKNKRAYLKKLLENFGCS 62 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENL------QVIPRSALIDGRSIP----- 126 +I + + +D N+++ ++A +NL + +D S Sbjct: 63 EKLILEAEKINNLMDTINLNEIEINAFSEVAKNLIKKLNIKDEEVEIYLDACSTNTKKFE 122 Query: 127 -------------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 +L + A K DS ++AASIIAK RD ++ K Y D G Sbjct: 123 SDFKEKIRDVIEERNLKIKIIAEHKADSKYPVVSAASIIAKAERDEIIENYKKIYGDIG- 181 Query: 174 DSHVGYPTA-KHQQVIKEK 191 GYP+ K + +++ Sbjct: 182 ---SGYPSDSKTIKFLEDY 197 >gi|10835820|pdb|1EKE|A Chain A, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii) With Mes Ligand gi|10835821|pdb|1EKE|B Chain B, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii) With Mes Ligand Length = 230 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 88/221 (39%), Gaps = 42/221 (19%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI 80 + GIDE GRG + GP VV A ++ G+ DSK+++ KR L + + + Sbjct: 2 IIIGIDEAGRGPVLGPXVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYLKKLLENLGY 61 Query: 81 ISISSASHQYIDKH----NIHKATLDAI----YHAVENLQVIPRSA--LIDGRSIP---- 126 + + I++ N++ ++A + +E L + ID S Sbjct: 62 VEKRILEAEEINQLXNSINLNDIEINAFSKVAKNLIEKLNIRDDEIEIYIDACSTNTKKF 121 Query: 127 --------------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 +L + A K D+ ++AASIIAK RD ++ K Y D G Sbjct: 122 EDSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAKAERDEIIDYYKKIYGDIG 181 Query: 173 FDSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207 GYP+ K + +++ I R ++ + + Sbjct: 182 ----SGYPSDPKTIKFLEDYFKKHKKLPDIARTHWKTCKRI 218 >gi|195388322|ref|XP_002052829.1| GJ19740 [Drosophila virilis] gi|194149286|gb|EDW64984.1| GJ19740 [Drosophila virilis] Length = 339 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 83/220 (37%), Gaps = 45/220 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKI--TSSA-- 79 G+DE GRG + GP+V + G DSK+++ +KRE ++ + A Sbjct: 66 GVDEAGRGPVLGPMVYGISYCPLERKSALVELGCADSKQLTEEKREIIFNDLNTLEYANS 125 Query: 80 --IISISSASHQYI--DKHNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126 ++ S I + K +L+ I A++ V +D P Sbjct: 126 CIGWAVEIISPNVISSSMYRRTKCSLNEVSMDSAMGLIQEAIDA-GVNIAEVYVDTVGPP 184 Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173 E + K DS ++AASI AKVTRD +++ ++P+ G Sbjct: 185 EKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--QFPE-GLIIKD 241 Query: 174 -DSHVGYP-TAKHQQVIKE-----KGPSCIHRLTFRPLRN 206 GYP ++ + E G + R ++ N Sbjct: 242 NAFGSGYPGDPVTKRFLTENIDLVFGFPRLVRFSWSTAEN 281 >gi|290991286|ref|XP_002678266.1| predicted protein [Naegleria gruberi] gi|284091878|gb|EFC45522.1| predicted protein [Naegleria gruberi] Length = 245 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 89/232 (38%), Gaps = 48/232 (20%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-------IPFGINDSKKISHKKREELY 72 E V GIDE GRG + GP+V A + F +NDSKK++ K RE+++ Sbjct: 8 EDENAYVMGIDEAGRGPVLGPLVYACMFCKSKYNTDNFLKKTFHVNDSKKLTAKMREKIF 67 Query: 73 EKITSSAIISI---SSASHQYI-------DKHNIHKATLDAIYHAV----ENLQVIPRS- 117 + + ++ I I K+N++ + D H + E L + Sbjct: 68 KTLKENSKIVHYITCIVQSDEISHKMLSRKKYNLNLISHDCAIHLIKTASETLSKKGKYL 127 Query: 118 --ALIDGRSIPEDLPCQ-------AFAVI---KGDSISLSIAAASIIAKVTRDRLMRIAH 165 ID P+ + +++ K DS + ASI+AKV RD ++ Sbjct: 128 KEVYIDTVGDPKKYQAKLQEKFPEIESIVVDKKADSKYPVVGGASIVAKVKRDEIVEEIQ 187 Query: 166 KKYPDYG-FDSHVGYPTAKHQ-----QVIKE-KGPSCIH---RLTFRPLRNL 207 Y GY + K+ + + + G H R ++ ++ + Sbjct: 188 SL--KYSKLKMGSGYTSDKYTKDFLNKALDKVFGY--HHTDVRFSWSTIKKI 235 >gi|262200028|ref|YP_003271237.1| ribonuclease HII/HIII [Haliangium ochraceum DSM 14365] gi|262083375|gb|ACY19344.1| ribonuclease HII/HIII [Haliangium ochraceum DSM 14365] Length = 246 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 22/196 (11%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKI-----SHKKREELYEKITSS 78 GIDE GRG + GP+V+AA+ LD + G+ DSK + R EL ++++ Sbjct: 19 GIDEAGRGPVLGPMVMAAVCLDSGGARWLTRTGVRDSKAFGASSKARSARAELAAEVSAR 78 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLPCQ-- 132 A+ + ID+ E L + + DG+++ L + Sbjct: 79 AVHAEVQVIDVAVIDRRVRRHELNLLEREIAEQLIARAPAVDAIIADGKNLFRPLSQRYP 138 Query: 133 -AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY-PDYGFDSHVGYPTAKHQQVIKE 190 A G++ S+AAASI+AK RD L ++Y P +G GY ++ ++ Sbjct: 139 HLEACDGGEARHASVAAASILAKHRRDELFACIAQRYQPLFGELRGGGYVNEATRRFLRA 198 Query: 191 K----G-PSCIHRLTF 201 G R ++ Sbjct: 199 HVERFGRLPPEARRSW 214 >gi|324509653|gb|ADY44053.1| Ribonuclease H2 subunit A [Ascaris suum] Length = 298 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 86/225 (38%), Gaps = 44/225 (19%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKI 75 V GIDE GRG + GP+V A I + G++DSK ++ +KR +++E + Sbjct: 24 ASGKPCVLGIDEAGRGPVLGPMVYACAISPLDAAEQLKELGVDDSKALTEEKRTQIFENM 83 Query: 76 ------TSSAIISISSASHQYIDKHNIHKA-----------TLDAIYHAVENLQVIPRSA 118 T + S + I + + ++ I A+EN + Sbjct: 84 NNEENTTKVVAYAYRVLSARLISAEMLRRCKYSLNELSHTSAINLIKFALEN-GINVTEI 142 Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIA----- 164 +D + A K DS+ + AASI AKVTRD ++R Sbjct: 143 YVDTVGPKSTYQAKLQAHFPNISITVTEKADSLFPVVGAASIAAKVTRDGVLRDWVFVEG 202 Query: 165 HKKYPDYGFDSHVGYP-TAKHQQVIKE-----KGPSCIHRLTFRP 203 P+ G+ GYP ++ + G S + R +++ Sbjct: 203 DVTVPEGGY--GSGYPGDPNTRKFLVTSIDPVFGYSSLVRFSWKT 245 >gi|322511078|gb|ADX06391.1| putative ribonuclease HII [Organic Lake phycodnavirus 2] Length = 120 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 8/93 (8%) Query: 118 ALIDGRSIPEDLP----CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD--- 170 +DG ++KGDSI I+AASI+AKV RD +R K+ P Sbjct: 23 IYVDGNHFKPCFYKDKWIPFECIVKGDSIHKCISAASILAKVERDEYIRTLCKEQPILNE 82 Query: 171 -YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 YG ++ GY T KH + IK+ G S HR +F+ Sbjct: 83 RYGLLNNKGYGTKKHVEGIKQYGYSEYHRKSFK 115 >gi|68067767|ref|XP_675818.1| ribonuclease H1 large subunit [Plasmodium berghei strain ANKA] gi|56495218|emb|CAH97375.1| ribonuclease H1 large subunit, putative [Plasmodium berghei] Length = 288 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 84/221 (38%), Gaps = 35/221 (15%) Query: 18 VREKNMWPV-AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELY 72 + E V GIDE GRG + GP+V + + I+DSKKI+ RE+++ Sbjct: 9 LYEFGNEEVRLGIDEAGRGPVLGPMVYSGFYCKKEDEKLLKEMKIDDSKKITEHDREKMF 68 Query: 73 EKITSSAI-------------ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 K+ +S + IS Q + + I T +I V N Sbjct: 69 YKLNNSKLPFAWRVHILMPQDISAKMLKRQKYNLNEISHDTAISIIQHVLNRGCNLTEVF 128 Query: 120 IDGR--------SIPEDLP-CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 +D + + P + K DS+ ++AASI AKVTRD L++ + Sbjct: 129 VDTVGKASVYEEKLQKLFPNIKCVVKEKADSLYPVVSAASICAKVTRDFLIKKWKYEEHI 188 Query: 171 YGFDS--HVGYP-TAKHQQVIKE-----KGPSCIHRLTFRP 203 D GYP + +K G I R ++ Sbjct: 189 INIDKGFGSGYPGDPVTKNFLKNNFDPIFGFPSIVRFSWST 229 >gi|321469942|gb|EFX80920.1| hypothetical protein DAPPUDRAFT_230884 [Daphnia pulex] Length = 307 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 84/220 (38%), Gaps = 40/220 (18%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELY---EKITSSAI 80 GIDE GRG + GP+V + G DSK ++ ++RE+L+ + + Sbjct: 34 GIDEAGRGPVLGPMVYGITYCPESRAEELKAIGCADSKTLTEEQREKLFGKLDSLQDFVG 93 Query: 81 ISISSASHQYID-------KHNIHKATLD---AIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ S I KH++++ + D + +L+ S +D PE Sbjct: 94 WAVEVISPNSICNNMFKRLKHSLNEVSHDSAIGLIRKALSLEANITSVFVDTVGPPEKYQ 153 Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY--------GF 173 + A+ K DS+ ++AASI AKV RD+ + K + Sbjct: 154 AKLSALFPGIKITVSKKADSLFPVVSAASICAKVARDKALSTWKFKESPFISLKAESQEL 213 Query: 174 DSHVGYP----TAKHQ-QVIK-EKGPSCIHRLTFRPLRNL 207 GYP T K Q I G + R ++ + Sbjct: 214 KWGSGYPGDPTTKKFLAQNIDGVFGFPQLVRFSWSTSEQI 253 >gi|82706071|ref|XP_727229.1| ribonuclease HII [Plasmodium yoelii yoelii str. 17XNL] gi|23482972|gb|EAA18794.1| ribonuclease HII, putative [Plasmodium yoelii yoelii] Length = 307 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 35/221 (15%) Query: 18 VREKNMWPV-AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELY 72 + E V GIDE GRG + GP+V + + I+DSKKI+ RE+++ Sbjct: 9 LYEFGNEEVRLGIDEAGRGPVLGPMVYSGFYCKKEDEKLLKEMKIDDSKKITEHDREKMF 68 Query: 73 EKITSSAI---ISISSASHQYI-------DKHNIHKATLDA---IYHAVENLQVIPRSAL 119 K+ +S + + Q I +K+N+++ + D I V + Sbjct: 69 YKLNNSKLPFAWRVHILMPQDISAKMLKKEKYNLNEISHDTAISIIQHVLSRGCNLTEVF 128 Query: 120 IDGR--------SIPEDLP-CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 +D + + P + K DS+ ++AASI AKVTRD L++ + Sbjct: 129 VDTVGKASVYEEKLQKLFPNIKCVVKEKADSLYPVVSAASICAKVTRDFLIKKWKYEEQI 188 Query: 171 YGFDS--HVGYP-TAKHQQVIKE-----KGPSCIHRLTFRP 203 D GYP + +K G I R ++ Sbjct: 189 INIDKGFGSGYPGDPVTKNFLKNNFDPIFGFPSIVRFSWST 229 >gi|242010277|ref|XP_002425895.1| ribonuclease hi large subunit, putative [Pediculus humanus corporis] gi|212509871|gb|EEB13157.1| ribonuclease hi large subunit, putative [Pediculus humanus corporis] Length = 271 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 97/238 (40%), Gaps = 47/238 (19%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFG 56 +F ++IPE+ E + G+DE GRG + GP+V + N+ G Sbjct: 33 LFNSNIPEKCFLEP----------CILGVDEAGRGPVLGPMVYSVFFCSINDADILKDIG 82 Query: 57 INDSKKISHKKREELYEKITSSAI---ISISSASHQYI-------DKHNIHKATLDAIYH 106 DSK ++ KKRE++++ I + ++ S I K+++++ ++ Sbjct: 83 CTDSKVLTEKKREDIFDLINQNNDKLGWAVDLLSPNLISNRMLQRKKYSLNEIAQNSTIK 142 Query: 107 AVENL---QVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAK 154 +E+L + + +D + + + K D + + AASI AK Sbjct: 143 LIESLLEKNITLKDIFVDTIGPADKYQEKLSKLFPNSKVTVKSKADLLYPVVGAASICAK 202 Query: 155 VTRDRLMRIAHKKYPD---YGFDSHVGYP-TAKHQQVIKE-----KGPSCIHRLTFRP 203 V RD ++ K+P+ + GYP K ++ + E G + R ++ Sbjct: 203 VIRDTAVQQW--KFPEKITIDAEFGTGYPGDPKTKKFLLESKDSVFGFPNLVRFSWST 258 >gi|195118270|ref|XP_002003663.1| GI18036 [Drosophila mojavensis] gi|193914238|gb|EDW13105.1| GI18036 [Drosophila mojavensis] Length = 342 Score = 108 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 85/220 (38%), Gaps = 45/220 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKI--TSSA-- 79 G+DE GRG + GP+V N+ + G DSK+++ +KR+ ++ + A Sbjct: 69 GVDEAGRGPVLGPMVYGISYCPLNSKEALVELGCADSKQLTEEKRDIIFNDMNTLEYANS 128 Query: 80 --IISISSASHQYIDK--HNIHKATLD---------AIYHAVENLQVIPRSALIDGRSIP 126 ++ S I + K +L+ I A++ V +D P Sbjct: 129 CIGWAVEIISPNVISNSMYRRSKCSLNEVSMDSAMGLIQRAIDA-GVNIAEVYVDTVGPP 187 Query: 127 EDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---- 173 E + K DS ++AASI AKVTRD +++ ++P+ G Sbjct: 188 EKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--QFPE-GLVIKD 244 Query: 174 -DSHVGYP-TAKHQQVIKE-----KGPSCIHRLTFRPLRN 206 GYP ++ + E G + R ++ N Sbjct: 245 NAFGSGYPGDPVTKRFLTENIDLVFGFPRLVRFSWSTAEN 284 >gi|296241926|ref|YP_003649413.1| ribonuclease HII [Thermosphaera aggregans DSM 11486] gi|296094510|gb|ADG90461.1| ribonuclease HII [Thermosphaera aggregans DSM 11486] Length = 248 Score = 108 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 50/213 (23%), Positives = 89/213 (41%), Gaps = 38/213 (17%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-----NDSKKISHKKREELYEKITSSA 79 + GIDE GRG L G +VVA ++++ + DSK ++ + R E + + +S+ Sbjct: 4 YLIGIDEAGRGPLVGDMVVAGVMVEEKVFEELLSRISIRDSKTMTPRGRFESFLALENSS 63 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVE-------NLQVIPRSALIDGRSIPE---- 127 I + + S + ID+ N++ T +I ++ + ID + Sbjct: 64 ISVYLDYLSPKEIDRENLNMLTAGSIVRIIQFFNTLLSSYDERLVEVYIDEVKGVKKVVE 123 Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 C+ + DS ++ ASIIAKV+RD + + D+G GYP Sbjct: 124 KECSKLFGKRCKLVFESQADSKYPIVSLASIIAKVSRDLSISSNTSVHGDFG----SGYP 179 Query: 181 TAKHQQVI--------KEKGPSCIHRLTFRPLR 205 + + V+ E P I R ++ L+ Sbjct: 180 SDP-RAVLWLERVYNSLEH-PPPIVRKSWSILK 210 >gi|254576869|ref|XP_002494421.1| ZYRO0A01100p [Zygosaccharomyces rouxii] gi|238937310|emb|CAR25488.1| ZYRO0A01100p [Zygosaccharomyces rouxii] Length = 309 Score = 108 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 82/230 (35%), Gaps = 47/230 (20%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKREELYEKI-- 75 + G+DE GRG + GP+V +G +DSKK+S +R L+ KI Sbjct: 41 QIILGVDEAGRGPVLGPMVYGISYCTKQFQDEILKPNYGFDDSKKLSDLERRRLFSKIYG 100 Query: 76 -------TSSAIISISSASHQYIDKHNIH---KATLDAIYHA----------VENLQVIP 115 ++ ++++ + I + A + A V V Sbjct: 101 ENGEVAEIANVGYAVTAITPADISSGMLRYPANANYNLNEQAHDVTIALIEGVLQRGVKL 160 Query: 116 RSALIDGRSIP--------EDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHK 166 +D P + P F V K DS+ ++ ASI+AKVTRD L+ + Sbjct: 161 HHVYVDTVGPPASYQKKLEQKFPHIKFTVAKKADSLYCVVSVASIVAKVTRDILLEQWAQ 220 Query: 167 KY--PDYGFDSHVGYPTAKHQQVIKEKGPSCI-----H--RLTFRPLRNL 207 + P+ G GYP + H R +++ L Sbjct: 221 QVSPPEAG-PLGSGYPADAKTTAWLRNTMKPLMGWDPHLVRFSWQTSETL 269 >gi|157136849|ref|XP_001656938.1| ribonuclease hi large subunit [Aedes aegypti] gi|108880967|gb|EAT45192.1| ribonuclease hi large subunit [Aedes aegypti] Length = 335 Score = 108 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 49/217 (22%), Positives = 84/217 (38%), Gaps = 41/217 (18%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI--TSS 78 V G+DE GRG + GP+V G DSK+++ +KR+ +++++ Sbjct: 60 CVLGVDEAGRGPVLGPMVYGIAFCPITKKEVLKKLGFADSKQLTEEKRDVIFDEMNQKDY 119 Query: 79 AIISISSA-----------SHQYIDKHNIHKATLD----AIYHAVENLQVIPRSALIDGR 123 A+ SI A S K ++++ ++D I A+E V +D Sbjct: 120 AVESIGWAVEVIAPNDICMSMLRRTKRSLNEVSMDSAIGLIRKAIEA-GVNIAEVYVDTV 178 Query: 124 SIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIA---HKKYPDY 171 PE + + K DS ++AASI AKV+RD +++ P Sbjct: 179 GPPEKYQAKLKQIFPKFKITVAKKADSTYPIVSAASICAKVSRDHALKVWSFREGLEPGI 238 Query: 172 GFDSHVGYP-TAKHQQVIKEK----GPSCIHRLTFRP 203 F GYP + + G + R ++ Sbjct: 239 NF--GSGYPGDPVTKNFLGTYDLVFGFPRLVRFSWST 273 >gi|71415356|ref|XP_809747.1| ribonuclease HII [Trypanosoma cruzi strain CL Brener] gi|70874177|gb|EAN87896.1| ribonuclease HII, putative [Trypanosoma cruzi] Length = 479 Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 9/101 (8%) Query: 112 QVIPRSALIDGRSIPEDL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162 V P L+DG + PE+ +I+GD SL+IAAAS +AKV RD +M Sbjct: 359 PVQPPLILVDGHAAPEETISFFTEIQTGGCVQPIIEGDKRSLTIAAASCLAKVARDEIMN 418 Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 YP Y F + GYP H + ++ G S IHR +++P Sbjct: 419 YVSTLYPKYQFAENKGYPVEYHMRAVQRYGVSSIHRKSYKP 459 Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 22/91 (24%) Query: 8 ERPHFELEAMVREKNM---------WPVAGIDEVGRGALAGPVVVAAII----------- 47 ++ LEA +R+ + + G DE GRG LAGPVV AA+ Sbjct: 106 QKERTRLEARMRKHGVVLRRSIKETYLTIGCDEAGRGPLAGPVVGAAVCRIPLSSFNNEL 165 Query: 48 --LDPNNIPFGINDSKKISHKKREELYEKIT 76 + F I DSK +S +R +++ IT Sbjct: 166 CAVYDTREEFQIFDSKSLSEGQRNVVFQNIT 196 >gi|322828022|gb|EFZ31977.1| ribonuclease HII, putative [Trypanosoma cruzi] Length = 479 Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 9/101 (8%) Query: 112 QVIPRSALIDGRSIPEDL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162 V P L+DG + PE+ +I+GD SL+IAAAS +AKV RD +M Sbjct: 359 PVQPPLILVDGHAAPEETISFFTEIQTGGCVQPIIEGDKRSLTIAAASCLAKVARDEIMN 418 Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 YP Y F + GYP H + ++ G S IHR +++P Sbjct: 419 YVSTLYPKYQFAENKGYPVEYHMRAVQRYGVSSIHRKSYKP 459 Score = 60.5 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 22/91 (24%) Query: 8 ERPHFELEAMVREKNM---------WPVAGIDEVGRGALAGPVVVAAII----------- 47 ++ LEA +R+ + + G DE GRG LAGPVV AA+ Sbjct: 106 QKERTRLEARMRKHGVVLRRSIKETYLTIGCDEAGRGPLAGPVVGAAVCRIPLSSFNNEL 165 Query: 48 --LDPNNIPFGINDSKKISHKKREELYEKIT 76 + + F I DSK +S +R +++ IT Sbjct: 166 CAVYDASEEFQIFDSKSLSEGQRNVVFQNIT 196 >gi|71406256|ref|XP_805682.1| ribonuclease HII [Trypanosoma cruzi strain CL Brener] gi|70869181|gb|EAN83831.1| ribonuclease HII, putative [Trypanosoma cruzi] Length = 479 Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 9/101 (8%) Query: 112 QVIPRSALIDGRSIPEDL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162 V P L+DG + PE+ +I+GD SL+IAAAS +AKV RD +M Sbjct: 359 PVQPPLILVDGHAAPEETISFFTEIQTGGCVQPIIEGDKRSLTIAAASCLAKVARDEIMN 418 Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 YP Y F + GYP H + ++ G S IHR +++P Sbjct: 419 YVSTLYPKYQFAENKGYPVEYHMRAVQRYGVSSIHRKSYKP 459 Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 22/91 (24%) Query: 8 ERPHFELEAMVREKNM---------WPVAGIDEVGRGALAGPVVVAAII----------- 47 ++ LEA +R+ + + G DE GRG LAGPVV AA+ Sbjct: 106 QKERTRLEARMRKHGVVLRRSIKETYLTIGCDEAGRGPLAGPVVGAAVCRIPLSSFNNEL 165 Query: 48 --LDPNNIPFGINDSKKISHKKREELYEKIT 76 + F I DSK +S +R +++ IT Sbjct: 166 CAVYDAREEFQIFDSKSLSEGQRNVVFQNIT 196 >gi|213404976|ref|XP_002173260.1| ribonuclease H2 subunit A [Schizosaccharomyces japonicus yFS275] gi|212001307|gb|EEB06967.1| ribonuclease H2 subunit A [Schizosaccharomyces japonicus yFS275] Length = 321 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 51/219 (23%), Positives = 83/219 (37%), Gaps = 38/219 (17%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITSS---A 79 V G+DE GRG + GP+V A +G DSK+++ +KR +L + + A Sbjct: 60 FVLGVDEAGRGPVLGPMVYAVAFCPTELKLSEYGFADSKQLTAEKRTQLLQAVCDRNNPA 119 Query: 80 IISISSASH------------QYIDKHNIHKATLD---AIYHAVENLQVIPRSALIDGRS 124 SI A+ + +DK+N++ D A+ +V +D Sbjct: 120 STSIGWATTVMTARDISRGMLRRVDKYNLNAQAHDSTIALIQSVLKAGYNISEIYVDTVG 179 Query: 125 IP--------EDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 P P V K DS+ ++ ASI AKVTRD + + + Sbjct: 180 PPAVYQAKLQNRFPQAKVTVTKKADSLFPIVSLASICAKVTRDAHLERTREALDIDNW-- 237 Query: 176 HVGYPTAKHQQVIKEKGPSCI-----H--RLTFRPLRNL 207 GY + K + H R +++ +NL Sbjct: 238 GCGYSSDSQTTAWLRKNVHPVFGWKGHVVRYSWQTAKNL 276 >gi|330831767|ref|XP_003291928.1| hypothetical protein DICPUDRAFT_11524 [Dictyostelium purpureum] gi|325077872|gb|EGC31557.1| hypothetical protein DICPUDRAFT_11524 [Dictyostelium purpureum] Length = 206 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 49/180 (27%), Positives = 75/180 (41%), Gaps = 29/180 (16%) Query: 29 IDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITSSAIIS-I 83 IDE G+G+L GP+VV+ +++D G+ DSK++S KRE LY I+ +I Sbjct: 5 IDEAGKGSLLGPLVVSCVVMDSKTEQLFKEQGVKDSKQLSPLKRESLYNLISEKSIYHQT 64 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENL---------QVIPRSALIDG---RSIPEDLP- 130 S+ IDK + + L + P ++D S LP Sbjct: 65 IILSNHDIDKRRSLHTLNEIETNIFYQLIKDSILNLAKNQPVKVILDSIESNSEKYSLPF 124 Query: 131 --------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 C+ K D S+ AASI+AKV RD+ ++ + GYP+ Sbjct: 125 KSYFGSPTCEIICETKADIKYTSVGAASILAKVKRDQFIKSLEIELDQ---TIGSGYPSD 181 >gi|170049569|ref|XP_001857534.1| ribonuclease H2 subunit A [Culex quinquefasciatus] gi|167871354|gb|EDS34737.1| ribonuclease H2 subunit A [Culex quinquefasciatus] Length = 334 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 50/217 (23%), Positives = 87/217 (40%), Gaps = 41/217 (18%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI 80 V G+DE GRG + GP+V + G DSK+++ +KRE +++++ Sbjct: 59 CVLGVDEAGRGPVLGPMVYGIAFSPIDKKDVLKKLGFADSKQLTEEKREHIFDEMNKQDF 118 Query: 81 ------ISISSASHQYI-------DKHNIHKATLD----AIYHAVENLQVIPRSALIDGR 123 ++ S I K ++++ ++D I+ A+E V +D Sbjct: 119 ATESIGWAVEVISPNDISMSMLRRSKRSLNEVSMDSAIGLIHKAIEA-GVNIAEVYVDTV 177 Query: 124 SIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY---PDY 171 PE + + K DS L ++AASI AKV+RD +++ + P+ Sbjct: 178 GPPEKYQAKLKLIFPNFKITVAKKADSTYLIVSAASICAKVSRDHALKVWKFREGTDPEV 237 Query: 172 GFDSHVGYP----TAKHQQVIKE-KGPSCIHRLTFRP 203 F GYP T K G + R ++ Sbjct: 238 KF--GSGYPGDPVTKKFLGDFDRVFGFPRLVRFSWST 272 >gi|302348278|ref|YP_003815916.1| Ribonuclease HII [Acidilobus saccharovorans 345-15] gi|302328690|gb|ADL18885.1| Ribonuclease HII [Acidilobus saccharovorans 345-15] Length = 223 Score = 107 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 27/206 (13%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS 78 M + G+DE GRG+L G +++A N+ G+ DSK+++ RE LY I Sbjct: 1 MSWIIGVDEAGRGSLVGELMLACFATKEENLGLLKDMGVRDSKQLTPHSRETLYRSIVRL 60 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSA---LIDGRSIPEDLPCQA 133 + ID+ N++ A ++ L ++ P ID LP + Sbjct: 61 GEFVVVPIPPAEIDRENVNVLEERAALKGLKVLLSRLRPELVKAIYIDKFGELRILPGEL 120 Query: 134 FAV---------IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + K D+ + ++AASIIAKV RDR + + Y G GYP+ Sbjct: 121 KRLGFRGRLVVEPKADANYVVVSAASIIAKVIRDRRIEVLRSMYGVEG----SGYPSDPL 176 Query: 185 -----QQVIKEKGPSCIHRLTFRPLR 205 +V+ I R ++ LR Sbjct: 177 TVSWVMKVLSSGARPPIIRYSWGTLR 202 >gi|313125351|ref|YP_004035615.1| rnase hii [Halogeometricum borinquense DSM 11551] gi|312291716|gb|ADQ66176.1| RNase HII [Halogeometricum borinquense DSM 11551] Length = 224 Score = 107 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 25/201 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI--TSSAIISIS 84 G DE G+G + GP+V AA+ + +P GI+DSK+++ +REE+ + + + ++ Sbjct: 9 IGSDEAGKGPVLGPMVAAAVRAPADALPDGIDDSKRLTSAQREEIDQTLRGRDDVTVGVA 68 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVI--PRSALID---------GRSI-----PED 128 + ID +L H V + D GR + E Sbjct: 69 TIDPVRIDDPTTDMNSLTVAAHVAAVAAVAQDADEVVTDAGDVDESRFGRRVRTGVGDEG 128 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQV 187 + + D + AAS++AKV RD LM ++Y DYG GYP+ ++ Sbjct: 129 TDVTVVSEHRADETYPHVGAASVVAKVRRDTLMETIGERYEDYG-PVGSGYPSDPTTREF 187 Query: 188 IKEK----GPSC-IHRLTFRP 203 ++ G R ++ Sbjct: 188 LRTYVSETGELPDCARASWAT 208 >gi|260781395|ref|XP_002585798.1| hypothetical protein BRAFLDRAFT_233701 [Branchiostoma floridae] gi|229270848|gb|EEN41809.1| hypothetical protein BRAFLDRAFT_233701 [Branchiostoma floridae] Length = 301 Score = 107 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 79/219 (36%), Gaps = 36/219 (16%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKIT 76 K GIDE GRG + GP+V G DSK ++ ++RE+L+E I Sbjct: 25 KGEPCCLGIDEAGRGPVLGPMVYGICYCPLSGQDRLKDMGFADSKTLTEEQREKLFEAIA 84 Query: 77 SSAI---ISISSASHQYI-------DKHNIHKATLDAIYHAVE---NLQVIPRSALIDGR 123 + +I + I K+N++ + D ++ + V + +D Sbjct: 85 GAGEFMGWTIHILAPNAISNCMLRRSKYNLNTLSHDTAIGLIQRTLDSGVNLQEVYVDTV 144 Query: 124 SIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG-- 172 + + K D+ ++AASI AKV RDR ++ G Sbjct: 145 GDATKYQDKLKGIFPDLDITVTPKADAKFPIVSAASICAKVARDRAVKGWTFFEEKDGNS 204 Query: 173 --FDSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRP 203 GYP+ + ++ + G R ++ Sbjct: 205 ISRKFGSGYPSDPETKKWLASMVEPVFGFPQFVRFSWST 243 >gi|260794677|ref|XP_002592334.1| hypothetical protein BRAFLDRAFT_285333 [Branchiostoma floridae] gi|229277552|gb|EEN48345.1| hypothetical protein BRAFLDRAFT_285333 [Branchiostoma floridae] Length = 303 Score = 107 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 79/219 (36%), Gaps = 36/219 (16%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKIT 76 K GIDE GRG + GP+V G DSK ++ ++RE+L+E I Sbjct: 25 KGEPCCLGIDEAGRGPVLGPMVYGICYCPLSGQDRLKDMGFADSKTLTEEQREKLFEAIA 84 Query: 77 SSAI---ISISSASHQYI-------DKHNIHKATLDAIYHAVE---NLQVIPRSALIDGR 123 + +I + I K+N++ + D ++ + V + +D Sbjct: 85 GAGEFMGWTIHILAPNAISNCMLRRSKYNLNTLSHDTAIGLIQRTLDSGVNLQEVYVDTV 144 Query: 124 SIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG-- 172 + + K D+ ++AASI AKV RDR ++ G Sbjct: 145 GDATKYQDKLKGIFPDLDITVTPKADAKFPIVSAASICAKVARDRAVKGWTFFEEKDGNT 204 Query: 173 --FDSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRP 203 GYP+ + ++ + G R ++ Sbjct: 205 ISRKFGSGYPSDPETKKWLASMVEPVFGFPQFVRFSWST 243 >gi|5825611|gb|AAD53318.1|AF179372_1 ribonuclease HII [Trypanosoma brucei rhodesiense] Length = 377 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 10/106 (9%) Query: 108 VENLQVIPRSALIDGRSIPEDL---------PCQAFAVIKGDSISL-SIAAASIIAKVTR 157 + V P L+DG + P + +I+GD SL IAAAS +AKV+R Sbjct: 254 FDAEPVQPPLVLVDGHTAPYETVSVFTDVQTGGCVQPIIEGDKRSLTIIAAASCLAKVSR 313 Query: 158 DRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 D +M YP Y F + GYP H + +K+ G S IHR ++RP Sbjct: 314 DEIMDYLDPLYPKYHFAENKGYPVDHHMRAVKKHGLSSIHRRSYRP 359 Score = 61.2 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 13/69 (18%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAII-------------LDPNNIPFGINDSKKISHKK 67 K + G DE GRG LAGPVV AA+ L + F I DSK +S + Sbjct: 27 KETFLTIGCDEAGRGPLAGPVVGAAVCRIPRSSFNNDLKALYDADEEFQIFDSKSVSETQ 86 Query: 68 REELYEKIT 76 R+ +Y IT Sbjct: 87 RKVVYNNIT 95 >gi|255731726|ref|XP_002550787.1| ribonuclease HI 35 large subunit [Candida tropicalis MYA-3404] gi|240131796|gb|EER31355.1| ribonuclease HI 35 large subunit [Candida tropicalis MYA-3404] Length = 356 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 86/240 (35%), Gaps = 51/240 (21%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKRE 69 E++V + V G+DE GRG + GP+V + +G DSK ++ KRE Sbjct: 68 ESIVANDSEPIVLGVDEAGRGPVLGPMVYGVAYALESFSDGLQKKYGFADSKVLTESKRE 127 Query: 70 ELYEKITSSA--------IISISSASHQYID----------------KHNIHKATLDAIY 105 EL+ I S+ +I ++ S D H T++ I Sbjct: 128 ELFRLIEESSDNEKGLSKVIGWATTSMTARDISSGMLQSSGKGAYNLNSQAHDVTINLIK 187 Query: 106 HAVENLQVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVT 156 V V +D P + + K DSI ++AAS++AKVT Sbjct: 188 Q-VLKKGVKISKIFVDTVGPPATYQAKLKGIFPDIEITVAKKADSIYPIVSAASVVAKVT 246 Query: 157 RDRLMRIAHKKYPDYGFDSHV---GYPTAKHQQVIKE------KGPSC-IHRLTFRPLRN 206 RD+ + + H GYP+ + + G R ++ ++ Sbjct: 247 RDKNIAYYNNHLDI--LKGHKLGSGYPSDPNTKTWLNSNVDSIFGWCFGFARFSWATAKD 304 >gi|55379775|ref|YP_137625.1| ribonuclease HII [Haloarcula marismortui ATCC 43049] gi|74516083|sp|Q5UXT4|RNH2_HALMA RecName: Full=Ribonuclease HII; Short=RNase HII gi|55232500|gb|AAV47919.1| RNAase HII [Haloarcula marismortui ATCC 43049] Length = 211 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 52/196 (26%), Positives = 76/196 (38%), Gaps = 24/196 (12%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSA 86 G+DE G+G + G + AA+ DP +P G+ DSK I ++RE L ++I SA + I+ Sbjct: 4 GVDEAGKGPVLGSMFAAAVRADPAALPGGVGDSKDIRPERRERLAKEIRESADAVGIAEI 63 Query: 87 SHQYIDKHNIHKATLDAIYH-------AVENLQVIPRSALIDGRSIPE------DLPCQA 133 S + ID TL A + L + D D Sbjct: 64 SVERIDADETDMNTLTVEGQAEALSAVARDGLSGTVDAGDTDAARFGRRVADAVDTDVAV 123 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ-----VI 188 A D + AASIIAKV RD + +Y D G GYP+ + + Sbjct: 124 TAEHGADETDSLVGAASIIAKVARDTHVAELAAEYGDVG----SGYPSDPTTRTFLADYV 179 Query: 189 KEKGPSCI-HRLTFRP 203 G R ++ Sbjct: 180 DRHGELPACARRSWST 195 >gi|72007775|ref|XP_782683.1| PREDICTED: similar to Ribonuclease H2, large subunit [Strongylocentrotus purpuratus] gi|115969873|ref|XP_001197209.1| PREDICTED: similar to Ribonuclease H2, large subunit [Strongylocentrotus purpuratus] Length = 324 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 48/214 (22%), Positives = 78/214 (36%), Gaps = 42/214 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG + GP+V + G DSK ++ +RE L + I ++ Sbjct: 55 GIDEAGRGPVLGPMVYGTSFCPISWNTQLGELGFADSKTLNEGQREALMKSIQDASDYMG 114 Query: 83 --ISSASHQYIDKHNI--HKATLDAIY--------HAVENLQVIPRSALIDGRSIPEDLP 130 + S YI + +K +L+A+ V + +D + Sbjct: 115 YKVEILSPNYIANSMLRRNKHSLNAVSMDSAIGLLRLALADGVQVKEVYVDTVGDAKKYQ 174 Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDR------LMRIAHKKYPDYGFDS 175 + + K DS ++AASI AKVTRDR + +YG Sbjct: 175 DKLKGLFPDLDITVCPKADSKFPIVSAASICAKVTRDRATTGWKFVEKNDIDKENYG--- 231 Query: 176 HVGYPT-AKHQQVIK-----EKGPSCIHRLTFRP 203 GYP+ ++ + G S R ++ Sbjct: 232 -SGYPSDPATKKWLAGNVDPVFGFSQFVRFSWST 264 >gi|226500696|ref|NP_001152248.1| ribonuclease HI large subunit [Zea mays] gi|195654267|gb|ACG46601.1| ribonuclease HI large subunit [Zea mays] Length = 284 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 26/172 (15%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK 74 + GIDE GRG + GP+V + + DSK + ++REEL+E Sbjct: 8 WATKEPCLMGIDEAGRGPVLGPMVYGCMYCAYSYNNTLATLKFADSKTLKEEQREELFES 67 Query: 75 IT-------SSAIISISSASHQYIDK------HNIHKATLDAIYHAVENLQVIPRSALID 121 + +I S + + K + I + + V + V+ +D Sbjct: 68 LKVNSSIRWEVDVICPKDISAKMLKKKSKVNLNEISHNSAMGLVRKVLRMGVLLAEVYVD 127 Query: 122 GRSIPED---------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA 164 PE + + K DS+ I+ ASI+AKVTRDR +R Sbjct: 128 TVGDPEKYRTKLTEKFIGIKFVVAKKADSLYPVISGASIVAKVTRDRALRNW 179 >gi|328865315|gb|EGG13701.1| hypothetical protein DFA_11462 [Dictyostelium fasciculatum] Length = 665 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 57/255 (22%), Positives = 91/255 (35%), Gaps = 60/255 (23%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKIS 64 RP N+ AGIDE G+G++ GP+VVA +++D G+ DSK ++ Sbjct: 237 RPRLTPANKFNNYNINIYAGIDESGKGSVLGPLVVAIVVIDQPTSQLLRATGVKDSKALT 296 Query: 65 HKKREELYEKITSSAIIS-ISSASHQYIDKHN----IHKATLDAIYHAVENLQV------ 113 +RE LY IT AI S ID+ +++ + ++ L+ Sbjct: 297 SAQRENLYSIITEKAIYYKTKIFSASDIDQRRKVQTLNQIEMGIFMELIDGLKQYYYENA 356 Query: 114 ----------------------IPRSAL------IDGRSIPEDLPCQAF--------AVI 137 P + I+ S P + I Sbjct: 357 SSEHLAQVMMSDDTDGDHADDSKPHHRITVEIDSIESNSQKFSYPLRQRYAGFANIVCEI 416 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK-HQQVIKEKGPS-- 194 K D S AAASI+AKVTRD+ + G GYP+ + I + Sbjct: 417 KADMTYTSTAAASIVAKVTRDKYIENLQS---QVGEPIGCGYPSDETTLSFIDRFYRANA 473 Query: 195 ---CIHRLTFRPLRN 206 R +++ + + Sbjct: 474 FDHPEVRQSWKTISS 488 >gi|330791509|ref|XP_003283835.1| hypothetical protein DICPUDRAFT_26608 [Dictyostelium purpureum] gi|325086221|gb|EGC39614.1| hypothetical protein DICPUDRAFT_26608 [Dictyostelium purpureum] Length = 289 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 80/219 (36%), Gaps = 40/219 (18%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI 80 + GIDE GRG + GP+V + NDSKK++ ++R L++K+ S Sbjct: 17 FIMGIDEAGRGPVMGPLVYGCCFAPISETATISKMKFNDSKKLTEQQRNHLFQKMCDSNK 76 Query: 81 I---SISSASHQY----------IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP- 126 I + S + I + I + + +V + + + +D P Sbjct: 77 ILGFEVDVISPEILSEKMLLKKPISLNVISHESAMGLIRSVLSKGINVQELYLDTVGTPA 136 Query: 127 -------EDLPCQAFAVI--KGDSISLSIAAASIIAKVTRDRLMR-------IAHKKYPD 170 P + V+ K DS+ ++AASI AKV RD + + Sbjct: 137 TYQAMLKNHFPEISKIVVSKKADSLYPIVSAASICAKVIRDHEITSKNFDDLEIQDEDDQ 196 Query: 171 YGFDSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRP 203 + GYP+ + + + G R ++ Sbjct: 197 LSTEFGSGYPSDPVTKFWLTKNRDKVFGYPSFIRFSWST 235 >gi|115896475|ref|XP_001199108.1| PREDICTED: similar to Ribonuclease H2, large subunit [Strongylocentrotus purpuratus] gi|115950853|ref|XP_001185778.1| PREDICTED: similar to Ribonuclease H2, large subunit [Strongylocentrotus purpuratus] Length = 324 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 48/214 (22%), Positives = 78/214 (36%), Gaps = 42/214 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG + GP+V + G DSK ++ +RE L + I ++ Sbjct: 55 GIDEAGRGPVLGPMVYGTSFCPISWNTQLGELGFADSKTLNEGQREALMKSIQDASDYMG 114 Query: 83 --ISSASHQYIDKHNI--HKATLDAIY--------HAVENLQVIPRSALIDGRSIPEDLP 130 + S YI + +K +L+A+ V + +D + Sbjct: 115 YKVEILSPNYIANSMLRRNKHSLNAVSMDSAIGLLRLALADGVQVKEVYVDTVGDAKKYQ 174 Query: 131 CQAFAVI---------KGDSISLSIAAASIIAKVTRDR------LMRIAHKKYPDYGFDS 175 + + K DS ++AASI AKVTRDR + +YG Sbjct: 175 DKLKGLFPDLDITVCPKADSKFPIVSAASICAKVTRDRATTGWKFVETNDFDKENYG--- 231 Query: 176 HVGYPT-AKHQQVIK-----EKGPSCIHRLTFRP 203 GYP+ ++ + G S R ++ Sbjct: 232 -SGYPSDPATKKWLAGNVDPVFGFSQFVRFSWST 264 >gi|71031853|ref|XP_765568.1| ribonuclease H1 large subunit [Theileria parva strain Muguga] gi|68352525|gb|EAN33285.1| ribonuclease H1 large subunit, putative [Theileria parva] Length = 277 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 89/222 (40%), Gaps = 43/222 (19%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKREELY 72 K+ + GIDE GRG + GP+V + ++DSKK++ RE + Sbjct: 19 SKSDEVILGIDEAGRGPVLGPMVYGGFFCIKGDDCKSILKNKIRVDDSKKLTETMRENKF 78 Query: 73 EKITSSAI---ISISSASHQYI-------DKHNIHKATLDA---IYHAVENLQVIPRSAL 119 ++ + + QYI DK+N+++ + D I V + + Sbjct: 79 YQLNDPNYPFGVVAEVITPQYISYKMLQRDKYNLNEISHDTAISIIRHVLDHGYNLKEVY 138 Query: 120 IDGR--------SIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 ID + + P F+V K DSI +++AASI+AKV RD +++ Sbjct: 139 IDAVGTVNKYEAKLSKLFPKIHFSVREKADSIYPTVSAASIVAKVIRDNIIKNWK----- 193 Query: 171 YGFD---SHVGYPTAKHQQVI------KEKGPSCIHRLTFRP 203 + F+ GYP + + K G I R ++ Sbjct: 194 FDFEVENIGSGYPGDPYTKDFLTNNMDKIFGFPDIVRYSWST 235 >gi|255931627|ref|XP_002557370.1| Pc12g05230 [Penicillium chrysogenum Wisconsin 54-1255] gi|211581989|emb|CAP80150.1| Pc12g05230 [Penicillium chrysogenum Wisconsin 54-1255] Length = 343 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 77/234 (32%), Gaps = 54/234 (23%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELYEKIT-- 76 V GIDE GRG + GP+V A L + + +DSK ++ R L + Sbjct: 61 CVLGIDEAGRGPVLGPMVYGAFYLPLDLHHSLLTEKHSFDDSKVLTPAVRANLMHLLNTP 120 Query: 77 -----SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRSA 118 S +I S + I + AT++ I VE+ V R Sbjct: 121 GDSLFESCGYAIKVLSARDISSGMMRSPTAVYNLNAQAMDATVEIIRGVVEDRGVDVREV 180 Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 ID P + + K DS+ ++AAS+ AKVTRD Y Sbjct: 181 YIDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAKVTRD---VALEVMYE 237 Query: 170 DYGFDSH----------VGYPTAKHQQVIKEKGPSCIH------RLTFRPLRNL 207 H GYP+ + + R ++ + + Sbjct: 238 AVLQAEHSLSPTSETWGSGYPSDSKCVGWLRRNMDPVFGWGNECRFSWGTAKEM 291 >gi|66801163|ref|XP_629507.1| ribonuclease H2 subunit A [Dictyostelium discoideum AX4] gi|74896782|sp|Q54D13|RNH2A_DICDI RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A gi|60462898|gb|EAL61095.1| ribonuclease H2 subunit A [Dictyostelium discoideum AX4] Length = 289 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 85/219 (38%), Gaps = 40/219 (18%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI 80 V GIDE GRG + GP+V + NDSKK++ ++R++L++K+ S Sbjct: 21 FVMGIDEAGRGPVMGPMVYGCCYAPISKSTTLKSMKFNDSKKLTEQQRDQLFDKMGESNK 80 Query: 81 I----------SISSASHQYIDKHNIHKATLD---AIYHAVENLQVIPRSALIDGRSIPE 127 I I S Y +++ + + + +V V + +D P+ Sbjct: 81 ILAYETDVITAEILSEKMLYKKPISLNVISHESAIGLIRSVLKKGVNVQELYLDTVGPPD 140 Query: 128 D--------LPCQAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKY-------PD 170 P ++ K DS+ ++AASI AKV RD + + Y Sbjct: 141 KYQLMLKKLFPEIGKIIVSKKADSLYPIVSAASIAAKVVRDFEITNKNFDYLNIYDQDEQ 200 Query: 171 YGFDSHVGYPTAKH-QQVI-----KEKGPSCIHRLTFRP 203 D GYP+ ++ + K G R +++ Sbjct: 201 LSTDFGSGYPSDPLSKKWLVKNRDKVFGYPNFIRFSWKT 239 >gi|167394469|ref|XP_001740978.1| ribonuclease H2 subunit A [Entamoeba dispar SAW760] gi|165894666|gb|EDR22579.1| ribonuclease H2 subunit A, putative [Entamoeba dispar SAW760] Length = 270 Score = 105 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 51/217 (23%), Positives = 76/217 (35%), Gaps = 38/217 (17%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAIISIS 84 GIDE GRG + GP+V +A I G +DSK +S RE+L+ I SA+ S Sbjct: 17 IGIDEAGRGPVLGPMVYSAFFTTNTEIISTMGFHDSKILSRTMREKLFSDIKESAVCGFS 76 Query: 85 --SASHQYIDKHNI-----------HKATLDAIYHAVENLQVIPRSALID---------- 121 + YI A D I+ + Q D Sbjct: 77 TRILTPSYISHLMCGPQKVSLNEIAFGAVRDIIHQIIRINQRKIVHIYCDTVGPSGKYQM 136 Query: 122 --GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV-- 177 + Q K D + ++AASI AKVTRD + Y + + Sbjct: 137 MIANEFKDIKLNQITVCPKADGLYPVVSAASICAKVTRDTCLDNW--IYEERNIQTRKVG 194 Query: 178 -GYPTA-KHQQVIK-----EKGPSCIHRLTFRPLRNL 207 GYP+ + +K G + R + + + Sbjct: 195 CGYPSDIDTIKWMKCQYDPLFGYPNLVRFGWETSKRI 231 >gi|169859580|ref|XP_001836428.1| ribonuclease H2 subunit A [Coprinopsis cinerea okayama7#130] gi|116502486|gb|EAU85381.1| ribonuclease H2 subunit A [Coprinopsis cinerea okayama7#130] Length = 308 Score = 105 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 77/241 (31%), Gaps = 42/241 (17%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDS 60 S P + + + + G+DE GRG + GP+V G DS Sbjct: 21 STPLTESYTYHSPLPTAPGPYILGVDEAGRGPVLGPLVYGVAYCPVAYKETLEELGFADS 80 Query: 61 KKISHKKREEL--------------YEKITSSAIISISSASHQYIDKHNIHKATLDAIYH 106 K ++ R L I AI S AT+ I Sbjct: 81 KTLTADTRSSLISTLCSDPSNLGWSVRVIAPQAISSGMLKKPPTNLNKQSQDATIGLIRQ 140 Query: 107 AVE-NLQVIPRSALIDGRS------IPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRD 158 ++ + V G + + P F V K DS + AAS+ AKVTRD Sbjct: 141 VIDKGINVTEVYVDALGNTSTYEAYLSSLFPGIDFTVANKADSKFKIVGAASVAAKVTRD 200 Query: 159 RLMRIAHKKYPDYG------FDS--HVGYPTAKHQQVIKE------KGPSCIHRLTFRPL 204 + + + G + GYP+ + Q + G I R ++ + Sbjct: 201 VCIEEW--VFEEDGGNAKSKWSKALGSGYPSDPNTQAWLKNAVDPVFGFPKIVRFSWSTV 258 Query: 205 R 205 + Sbjct: 259 K 259 >gi|330508333|ref|YP_004384761.1| ribonuclease HII [Methanosaeta concilii GP-6] gi|328929141|gb|AEB68943.1| ribonuclease HII [Methanosaeta concilii GP-6] Length = 210 Score = 105 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 52/210 (24%), Positives = 85/210 (40%), Gaps = 31/210 (14%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79 + G DE G+G + G + VA +++D G+ DSK +S KRE L KIT+ A Sbjct: 1 MLLMGADEAGKGPVIGSMFVAGLVIDEERFFDLAVLGVKDSKMLSPAKREALARKITTIA 60 Query: 80 II-SISSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIPEDLPCQA--- 133 I + ID+ + D + + + ++ A++D + + QA Sbjct: 61 TDQYILEVRAEVIDELRLVMTMNDIMVRSFSQVVGRLHADRAILDAADVNAERFAQAVRN 120 Query: 134 --------FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----T 181 A K D ++AASI+AKV RDR MR + GYP T Sbjct: 121 HSKTSMDLIAEHKADQRHHVVSAASILAKVRRDRSMRELENEM---HCKIGSGYPHDRDT 177 Query: 182 AKHQ-QVIKE---KGPSCIHRLTFRPLRNL 207 + ++E P R ++ + + Sbjct: 178 IAFLSEWVRENKDLPPCA--RHSWTTAQRI 205 >gi|317137770|ref|XP_001727941.2| ribonuclease H2 subunit A [Aspergillus oryzae RIB40] Length = 351 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 82/236 (34%), Gaps = 52/236 (22%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP------FGINDSKKISHKKREELYEKIT- 76 + V G+DE GRG + GP+V +A L + + NDSK ++ R L + Sbjct: 66 YFVLGVDEAGRGPVLGPMVYSAFYLPHDLHHSLLARDYNFNDSKVLTPGVRANLMRLLCT 125 Query: 77 ------SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRS 117 S + S + I + AT++ I VE +V R Sbjct: 126 PGTPLFESCGWATKLLSARDISSGMMRPGAGVYNLNAQAMDATVELIREIVEGRKVDIRE 185 Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHK-K 167 ID P + + K DS+ ++AAS+ AKVTRD + + H+ Sbjct: 186 VYIDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAKVTRDVALELCHEDI 245 Query: 168 YPDYGFDS----------HVGYPTAKHQQVIKEKGPSCIH------RLTFRPLRNL 207 FD GYP+ + I R ++ + + Sbjct: 246 VKAQQFDDPSQATSTESWGSGYPSDSKCVGWLRRNMDPIFGWGNECRFSWGTSKEM 301 >gi|83770969|dbj|BAE61102.1| unnamed protein product [Aspergillus oryzae] Length = 363 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 82/236 (34%), Gaps = 52/236 (22%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP------FGINDSKKISHKKREELYEKIT- 76 + V G+DE GRG + GP+V +A L + + NDSK ++ R L + Sbjct: 78 YFVLGVDEAGRGPVLGPMVYSAFYLPHDLHHSLLARDYNFNDSKVLTPGVRANLMRLLCT 137 Query: 77 ------SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRS 117 S + S + I + AT++ I VE +V R Sbjct: 138 PGTPLFESCGWATKLLSARDISSGMMRPGAGVYNLNAQAMDATVELIREIVEGRKVDIRE 197 Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHK-K 167 ID P + + K DS+ ++AAS+ AKVTRD + + H+ Sbjct: 198 VYIDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAKVTRDVALELCHEDI 257 Query: 168 YPDYGFDS----------HVGYPTAKHQQVIKEKGPSCIH------RLTFRPLRNL 207 FD GYP+ + I R ++ + + Sbjct: 258 VKAQQFDDPSQATSTESWGSGYPSDSKCVGWLRRNMDPIFGWGNECRFSWGTSKEM 313 >gi|50551451|ref|XP_503199.1| YALI0D23661p [Yarrowia lipolytica] gi|49649067|emb|CAG81399.1| YALI0D23661p [Yarrowia lipolytica] Length = 315 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 81/222 (36%), Gaps = 43/222 (19%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHKKREELYEKIT--- 76 + G+DE GRG + G +V G DSK ++ +KR L +I Sbjct: 42 CILGVDEAGRGPVLGSMVYGLAYCTKEFADEELSKTGFADSKTLTAEKRSALMREICCDE 101 Query: 77 ---SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRSALI 120 +S + Q I + T A+ V + V+ A I Sbjct: 102 TLVEHLGWCTTSMTAQDISSAMLRPMSRGVYNLNDQAHDTTMALIQGVLDRGVLLTEAYI 161 Query: 121 DGRSIP--------EDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 D P + P F V K DS+ ++AASI AKVTRD ++ + Sbjct: 162 DTVGPPASYTAKLSKQFPHIKFTVTKKADSLFPIVSAASICAKVTRDMDLKSQDLSEGTW 221 Query: 172 GFDSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207 G GYP+ K +K G + R +++ ++L Sbjct: 222 G----SGYPSDPKTSVWLKSHVDQVFGWMPVVRFSWQTAKDL 259 >gi|295132558|ref|YP_003583234.1| ribonuclease HII [Zunongwangia profunda SM-A87] gi|294980573|gb|ADF51038.1| ribonuclease HII [Zunongwangia profunda SM-A87] Length = 73 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 26/59 (44%), Positives = 40/59 (67%) Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +SIA ASI+AK RD M I H++YP Y + + GYPT +H++ I++ G + HR +F+ Sbjct: 1 MSIATASILAKTYRDEYMEIIHEEYPIYNWKKNKGYPTKEHREAIRKYGITKYHRKSFK 59 >gi|296422347|ref|XP_002840722.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636945|emb|CAZ84913.1| unnamed protein product [Tuber melanosporum] Length = 336 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 87/224 (38%), Gaps = 45/224 (20%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKIT---- 76 + G+DE GRG + GP+V A ++ P +DSKK++H R L + +T Sbjct: 63 VILGVDEAGRGPVLGPMVYAVAYCLKSDNPMLREHKFDDSKKLTHSLRTHLLQTLTTPDT 122 Query: 77 ---SSAIISISSASHQYID----KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED- 128 + S S S + I + +T + A + + + L G +I E Sbjct: 123 TLHRNLGWSTISLSPRDISSGMLRSTTSSSTYNLNAQAFDATTTLITAVLSSGVNIREIY 182 Query: 129 -----------------LPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 P A V K DSI ++AAS+ AKVTRD + + P+ Sbjct: 183 VDTVGTASTYQSRLQKLFPHIAVTVSKKADSIYPIVSAASVCAKVTRDAAIGVL---VPE 239 Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIH-------RLTFRPLRNL 207 G + GYP + + + + R ++ R++ Sbjct: 240 -GEEIGSGYPGDEKTKEWLRREMEPVFGWEVGMARFSWATARDM 282 >gi|167378158|ref|XP_001734698.1| ribonuclease H2 subunit A [Entamoeba dispar SAW760] gi|165903720|gb|EDR29164.1| ribonuclease H2 subunit A, putative [Entamoeba dispar SAW760] Length = 270 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 51/217 (23%), Positives = 76/217 (35%), Gaps = 38/217 (17%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAIISIS 84 GIDE GRG + GP+V +A I G +DSK +S RE+L+ I SA+ S Sbjct: 17 IGIDEAGRGPVLGPMVYSAFFTTNTEIISTMGFHDSKILSRTMREKLFSDIKESAVCGFS 76 Query: 85 --SASHQYIDKHNI-----------HKATLDAIYHAVENLQVIPRSALID---------- 121 + YI A D I+ + Q D Sbjct: 77 TRILTPSYISHLMCGPQKVSLNEIAFGAVRDIIHQIIRISQRKIVHIYCDTVGPSGKYQM 136 Query: 122 --GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS---H 176 + Q K D + ++AASI AKVTRD + Y + + Sbjct: 137 MIANEFKDIKLNQITVCPKADGLYPVVSAASICAKVTRDTCLDNW--IYEERNIQTKQVG 194 Query: 177 VGYPTA-KHQQVIK-----EKGPSCIHRLTFRPLRNL 207 GYP+ + +K G + R + + + Sbjct: 195 CGYPSDIDTIKWMKCQYDPLFGYPNLVRFGWETSKRI 231 >gi|320100359|ref|YP_004175951.1| ribonuclease HII [Desulfurococcus mucosus DSM 2162] gi|319752711|gb|ADV64469.1| ribonuclease HII [Desulfurococcus mucosus DSM 2162] Length = 255 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 49/213 (23%), Positives = 89/213 (41%), Gaps = 35/213 (16%) Query: 27 AGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS-SAII 81 G+DE GRG G +V+ +I + + G+ DSK + R EL+ +I S + I Sbjct: 9 IGVDEAGRGPFVGDMVIVGVIGPSRVFESLVSIGLKDSKALEPVARRELFWEILSSNVDI 68 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAV--------------ENLQVIPRSALIDGRSIPE 127 S ID+ N+++ I + +L++ G S+ E Sbjct: 69 VAWLVSPFTIDRGNMNELEYIRICRILKLLSYSRLARSKPGNSLRIYVDEVKGYGESVRE 128 Query: 128 ---DLPCQAFAVI---KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + + V+ + D+ +++AAS+IAKV RDR + + K G GYP+ Sbjct: 129 CAMRIYGEHVEVVMEPEADARYPAVSAASVIAKVIRDRNIDVLGKITGGLG----SGYPS 184 Query: 182 -AKHQQVIKE-KG----PSCIHRLTFRPLRNLS 208 + + G P R ++ +R+++ Sbjct: 185 DPASRAWLATIYGRWDKPPVFIRRSWGIVRDIA 217 >gi|156082533|ref|XP_001608751.1| ribonuclease H [Babesia bovis T2Bo] gi|154796000|gb|EDO05183.1| ribonuclease H, putative [Babesia bovis] Length = 264 Score = 104 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 81/218 (37%), Gaps = 42/218 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKREE---------- 70 GIDE GRG + GP+V + + + G++DSKK++ R+ Sbjct: 6 GIDEAGRGPVLGPMVYGSFVCPIGDEYRRMLKDNIGVDDSKKLTASLRDSKFRALNGPET 65 Query: 71 ----LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 E IT IS + + +NI + A+ + +D Sbjct: 66 PFAMCAEVITPR-YISYKMLQREAYNLNNISHDSAIALIRYYISQGFNITEVYVDAVGPA 124 Query: 127 EDL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + K DSI ++AASI+AKV RD ++ K P+ D Sbjct: 125 AKYEAMLTQLFPKIKCVVANKADSIFPVVSAASIVAKVIRDNIIDSWFKDSPE-RVDVGS 183 Query: 178 GYP----TAK----HQQVIKEKGPSCIHRLTFRPLRNL 207 GYP T + H + G S R+++ +++ Sbjct: 184 GYPGDPVTKQFLSSHLDRL--FGFSSFVRVSWSTAKSI 219 >gi|19114596|ref|NP_593684.1| ribonuclease H2 complex subunit Rnh201 (predicted) [Schizosaccharomyces pombe 972h-] gi|1723422|sp|Q10236|RNH2A_SCHPO RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|1204203|emb|CAA93552.1| ribonuclease H2 complex subunit Rnh201 (predicted) [Schizosaccharomyces pombe] Length = 326 Score = 104 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 50/218 (22%), Positives = 85/218 (38%), Gaps = 42/218 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKIT-------SS 78 G+DE GRG + GP+V A + +G DSK ++ KREEL + I + Sbjct: 67 GVDEAGRGPVLGPMVYAVAYCPVDFDLTNYGFADSKTLASLKREELLKLICNKSNELGKN 126 Query: 79 AIISISSASHQYI--------DKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPE 127 S S S + + +K+N++ D ++ + + +D P Sbjct: 127 VGWSTMSISARELAAGMLRYRNKYNLNLQAHDTTIDLIKKVYESGINVTEIYVDTVGPPI 186 Query: 128 DLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + A K DS+ ++ ASI AKVTRD + A + + G Sbjct: 187 SYQEKLQAHFPQAKVTVTKKADSLFPIVSLASICAKVTRDIQLECARESIRTENW--GSG 244 Query: 179 YPTAKH-QQVIKE--------KGPSCIHRLTFRPLRNL 207 Y + + +K KG I R +++ ++L Sbjct: 245 YSSDARTTEWLKVNVDKIFGWKG--DIVRYSWKTAKDL 280 >gi|320582951|gb|EFW97168.1| ribonuclease HI large subunit [Pichia angusta DL-1] Length = 303 Score = 104 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 88/229 (38%), Gaps = 45/229 (19%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELY 72 + N + G+DE GRG + GP+V + +G DSK ++ ++R++L Sbjct: 34 LESPNEPVILGVDEAGRGPVLGPMVYGIAYCLKDYSSDLKSVYGFADSKTLTVERRDQLM 93 Query: 73 EKITS----------SA-------IISISSASHQYIDKHNIHKATLDAIYHAVENL---Q 112 + I A IS + I N+++ DA ++ + + Sbjct: 94 KSIIEPDGDLCQNVGWATTTMTARDISSEMLKPRLIGNINLNEQAHDATIKLIQGVLDQK 153 Query: 113 VIPRSALIDGRSIPEDL---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163 V + +D P+ + K DS+ ++ ASI+AKVTRD + Sbjct: 154 VNLKEVYVDTVGPPDSYQRKLSSRFPGIKVTVTKKADSLFPIVSTASIVAKVTRDCSLYY 213 Query: 164 AHKKYPDYGFDSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRN 206 G D GYP+ + Q + G + + R +++ R+ Sbjct: 214 LAD-----GADWGSGYPSDPRTSQWLNSNVHPVFGWNSMVRFSWQTSRD 257 >gi|119496273|ref|XP_001264910.1| ribonuclease HI large subunit [Neosartorya fischeri NRRL 181] gi|119413072|gb|EAW23013.1| ribonuclease HI large subunit [Neosartorya fischeri NRRL 181] Length = 363 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 84/240 (35%), Gaps = 60/240 (25%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP------FGINDSKKISHKKREELYEKIT- 76 + V G+DE GRG + GP+V +A + + NDSK ++ R L + Sbjct: 76 YFVLGVDEAGRGPVLGPMVYSAFYIPHTLHHSLLARDYSFNDSKVLTPGVRANLMRLLCT 135 Query: 77 ------SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRS 117 +S + S + I + AT++ I VE +V R Sbjct: 136 AGNPLHASCGWATKVLSARDISAGMMRPASGAYNLNAQAMDATVEIIRGIVEERRVDIRE 195 Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 ID P + + K D++ ++AAS++AKVTRD + H+ Sbjct: 196 VYIDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAKVTRDVALEFCHE-- 253 Query: 169 PDYGFDS-------------HVGYPTAK--------HQQVIKEKGPSCIHRLTFRPLRNL 207 YG GYP+ H I G C R ++ + + Sbjct: 254 AVYGLQRSEAPSLGVATDSWGSGYPSDSKCVSWLRNHMDPIFGWGNEC--RFSWGTAKEM 311 >gi|261886381|ref|ZP_06010420.1| ribonuclease HII [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 102 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 43/69 (62%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++K DS ++AASIIAKV+RDR MR K YPD+G+ H GY H + +K+ G Sbjct: 24 IKTIVKADSSVPQVSAASIIAKVSRDRQMRRFDKIYPDFGYAKHKGYGVKAHIEALKQHG 83 Query: 193 PSCIHRLTF 201 + + RL+F Sbjct: 84 SNELTRLSF 92 >gi|159130978|gb|EDP56091.1| ribonuclease HI large subunit [Aspergillus fumigatus A1163] Length = 363 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 84/240 (35%), Gaps = 60/240 (25%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP------FGINDSKKISHKKREELYEKIT- 76 + V G+DE GRG + GP+V +A + + NDSK ++ R L + Sbjct: 76 YFVLGVDEAGRGPVLGPMVYSAFYIPHTLHHSLLARDYSFNDSKVLTPGVRANLMRLLCT 135 Query: 77 ------SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRS 117 +S + S + I + AT++ I VE +V R Sbjct: 136 AGNPLHASCGWATKVLSARDISAGMMRPTSGAYNLNAQAMDATVEIIRGIVEERRVDIRE 195 Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 ID P + + K D++ ++AAS++AKVTRD + H+ Sbjct: 196 VYIDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAKVTRDMALEFCHE-- 253 Query: 169 PDYGFDS-------------HVGYPTAK--------HQQVIKEKGPSCIHRLTFRPLRNL 207 YG GYP+ H I G C R ++ + + Sbjct: 254 AVYGLQRYEAPSMEVATDSWGSGYPSDSKCVSWLRNHMDPIFGWGNEC--RFSWGTAKEM 311 >gi|70991314|ref|XP_750506.1| ribonuclease HI large subunit [Aspergillus fumigatus Af293] gi|66848138|gb|EAL88468.1| ribonuclease HI large subunit [Aspergillus fumigatus Af293] Length = 363 Score = 103 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 84/240 (35%), Gaps = 60/240 (25%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP------FGINDSKKISHKKREELYEKIT- 76 + V G+DE GRG + GP+V +A + + NDSK ++ R L + Sbjct: 76 YFVLGVDEAGRGPVLGPMVYSAFYIPHTLHHSLLARDYSFNDSKVLTPGVRANLMRLLCT 135 Query: 77 ------SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRS 117 +S + S + I + AT++ I VE +V R Sbjct: 136 AGNPLHASCGWATKVLSARDISAGMMRPTSGAYNLNAQAMDATVEIIRGIVEERRVDIRE 195 Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 ID P + + K D++ ++AAS++AKVTRD + H+ Sbjct: 196 VYIDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAKVTRDMALEFCHE-- 253 Query: 169 PDYGFDS-------------HVGYPTAK--------HQQVIKEKGPSCIHRLTFRPLRNL 207 YG GYP+ H I G C R ++ + + Sbjct: 254 AVYGLQRYEAPSMEVATDSWGSGYPSDSKCVSWLRNHMDPIFGWGNEC--RFSWGTAKEM 311 >gi|183232283|ref|XP_655093.2| RNase HI large subunit [Entamoeba histolytica HM-1:IMSS] gi|169802113|gb|EAL49706.2| RNase HI large subunit, putative [Entamoeba histolytica HM-1:IMSS] Length = 270 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 50/217 (23%), Positives = 76/217 (35%), Gaps = 38/217 (17%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAIISIS 84 GIDE GRG + GP+V +A + G +DSK +S RE+L+ I S + S Sbjct: 17 IGIDEAGRGPVLGPMVYSAFFTTNTEVISTMGFHDSKILSRTMREKLFTDIKESGVCGFS 76 Query: 85 --SASHQYIDKHNI-----------HKATLDAIYHAVENLQVIPRSALID---------- 121 + YI + A D I+ + Q D Sbjct: 77 TRILTPSYISQMMCGPQKVSLNEIAFSAVRDIIHQIIRTSQRKIVHIYCDTVGPSKKYQA 136 Query: 122 --GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS---H 176 E Q K D + ++AASI AKVTRD + Y + + Sbjct: 137 MIANEFKEVKLSQITVCPKADGLYPVVSAASICAKVTRDTCLDNW--IYEETNIQTRQVG 194 Query: 177 VGYPTAK-HQQVIK-----EKGPSCIHRLTFRPLRNL 207 GYP+ + +K G + R + + + Sbjct: 195 CGYPSDVDTIKWMKCQYDPLFGYPNLVRFGWETSKRI 231 >gi|269986419|gb|EEZ92706.1| ribonuclease HII [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 218 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 57/210 (27%), Positives = 87/210 (41%), Gaps = 35/210 (16%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREEL-YEKITSSAII 81 GIDE GRG + GP+ +A I + + G+ DSK +S K+ L E I SS Sbjct: 4 IGIDEAGRGPVIGPMTIAGIGIGEDLAQKFKLIGVKDSKMLSIKRIYLLEREIIKSSNNF 63 Query: 82 SISSASHQYIDKH-----NIHKATLDAIYHAVENLQVIPRSALIDG---RSIPEDL---- 129 + S + ID N++ LD + NL + +ID + L Sbjct: 64 KVIKLSAEEIDNRFENGKNLNYLELDNMAEIANNLAG--ETVVIDSPSRNTEKIRLYLSK 121 Query: 130 ---PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQ 185 + A D + ++AASIIAK R+R + K+ G+D GYP+ K Sbjct: 122 KIKDKKIIAENYADKNHIEVSAASIIAKANREREVEKIKKEL---GYDFGSGYPSDPKTI 178 Query: 186 QVIK---------EKGPSCIHRLTFRPLRN 206 Q IK ++ R T+ ++N Sbjct: 179 QFIKIITENERINQEPYKKFVRKTWNTVKN 208 >gi|289810861|ref|ZP_06541490.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 66 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 37/66 (56%), Positives = 42/66 (63%), Gaps = 1/66 (1%) Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 LIDG PE LP + AV+KGDS I+AASI+AKVTRD M +P YGF H G Sbjct: 2 LIDGNRCPE-LPVPSMAVVKGDSRVAEISAASILAKVTRDAEMAALDIVFPQYGFAQHKG 60 Query: 179 YPTAKH 184 YPTA H Sbjct: 61 YPTAFH 66 >gi|115385935|ref|XP_001209514.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114187961|gb|EAU29661.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 339 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 80/234 (34%), Gaps = 50/234 (21%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP------FGINDSKKISHKKREELYEKIT- 76 + V G+DE GRG + GP+V +A L + + +DSK ++ R L + Sbjct: 57 YFVLGVDEAGRGPVLGPMVYSAFYLPHDLHHSLLAQKYSFDDSKVLTPAVRLNLMRTLCT 116 Query: 77 ------SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRS 117 S + + Q I + AT++ I VE +V R Sbjct: 117 PGTPLFESCGWATKLLTAQDISSGMMRPAAAAYNLNAQAMDATIEIIRGIVEERKVNVRE 176 Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRI-AHKK 167 ID P + + K DS+ ++AAS+ AKVTRD + + + Sbjct: 177 VYIDTIGNPASYQQKLERIFPTLKITVAKKADSLYPCVSAASVAAKVTRDIALELCYEEI 236 Query: 168 YPDYGFDS--------HVGYPTAKHQQVIKEKGPSCIH------RLTFRPLRNL 207 D GYP+ + + R ++ + + Sbjct: 237 MKAKSLDQSQTTTDTWGSGYPSDSKCVGWLRRNMDPVFGWGNECRFSWGTAKEM 290 >gi|170099025|ref|XP_001880731.1| predicted protein [Laccaria bicolor S238N-H82] gi|164644256|gb|EDR08506.1| predicted protein [Laccaria bicolor S238N-H82] Length = 302 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 75/228 (32%), Gaps = 55/228 (24%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80 + G+DE GRG + GP+V + G DSK ++ R L ++S Sbjct: 34 YIVGVDEAGRGPVLGPLVYGIAYCPASYKEDMEELGFADSKTLNSDTRLSLLNTLSSQPE 93 Query: 81 ---ISISSASHQYID-----------KHNIHKATLDAIYHAVENLQVIPRSALIDGRS-- 124 S+ S Q I AT+ + V + +D Sbjct: 94 NLGWSVRVVSPQAISSGMLCRPPTNLNRQSQDATILLLRE-VLAKGIQVSEVYVDALGTT 152 Query: 125 ------IPEDLPCQAFAV-IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH- 176 + P F V K DS + AAS+ AKVTRD + + F+ + Sbjct: 153 TTYEAYLSSLFPGIDFTVTTKADSKFKIVGAASVAAKVTRDACVE-------GWTFEENI 205 Query: 177 -------------VGYPTAKHQQVIKE------KGPSCIHRLTFRPLR 205 GYP+ + Q + G + R ++ ++ Sbjct: 206 GKEGDKWSNATLGSGYPSDPNTQAWLKGSVDPVFGFPKLVRFSWTTVK 253 >gi|254565155|ref|XP_002489688.1| Ribonuclease H2 catalytic subunit, removes RNA primers during Okazaki fragment synthesis [Pichia pastoris GS115] gi|238029484|emb|CAY67407.1| Ribonuclease H2 catalytic subunit, removes RNA primers during Okazaki fragment synthesis [Pichia pastoris GS115] gi|328350107|emb|CCA36507.1| ribonuclease H2 subunit A [Pichia pastoris CBS 7435] Length = 314 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 93/231 (40%), Gaps = 41/231 (17%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREE 70 E++++ G+DE GRG + GP+V +P FG DSK ++ +KR E Sbjct: 40 ESVLKNPEKPCCLGVDEAGRGPVVGPMVYGVSYCLEEYEPRLKDFGFADSKTLTEQKRSE 99 Query: 71 LYEKITS----------SAIISISS--ASHQYIDKHNIHKATLDAIYH--------AVEN 110 L E + + A SIS+ S + HNI L+ H V Sbjct: 100 LLESLCNGDHELRKNVGWATTSISACDISSAMLKPHNIGNYNLNEQAHDVTMELIDKVIQ 159 Query: 111 LQVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLM 161 V R +D P + K D+I +++AS+ AKVTRD + Sbjct: 160 KGVNLRHVYVDTVGPPASYQKKLQQRFPALLITVSKKADAIYPCVSSASVCAKVTRDVCL 219 Query: 162 RIAHKKYPDYGFDSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRN 206 R ++ + + D GYP+ ++ + + G S R +++ ++ Sbjct: 220 RTSNGE--ENLLDCGSGYPSDPNTKKWLAQSIHPLFGWSRDVRFSWQTAKD 268 >gi|157876580|ref|XP_001686636.1| ribonuclease H [Leishmania major strain Friedlin] gi|23477654|gb|AAN34793.1| ribonuclease H(35) [Leishmania major] gi|56713264|gb|AAW23359.1| ribonuclease HIIB [Leishmania major] gi|68129711|emb|CAJ09017.1| putative ribonuclease H [Leishmania major strain Friedlin] Length = 301 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 83/225 (36%), Gaps = 51/225 (22%) Query: 24 WPVAGIDEVGRGALAGPVVV-AAII-LDPNNIPF---GINDSKKISHKKREELYEKITSS 78 + V GIDE GRG + GP+V A+I L ++ + DSK ++ ++R +++ Sbjct: 44 YLVLGIDEAGRGPVIGPMVYTGAVISLGEHDDLVRLCHVADSKMLNERRRLASLQQLRQL 103 Query: 79 AII--SISSASHQYIDKHNI-----------HKATLDAIYHAVENLQVIPRSALIDGRSI 125 S + I K H+ + I A +A +D Sbjct: 104 KTFRSFTVCVSPEEISKTMTGRSGRNSNTLSHETAIQIISEATLASAGKLCAAYVDTVGP 163 Query: 126 PEDLPC---------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 PE + K DSI ++AASI+AK RD + + + Sbjct: 164 PETYQARLAGRFPHLRVTVAKKADSIFPIVSAASIVAKTVRDTAIEALGE-------NIG 216 Query: 177 VGYPT-AKHQQVIKEKGPSCIH------------RLTFRPLRNLS 208 GYP+ + + ++ +H R ++ PL L+ Sbjct: 217 SGYPSDPRTMEWLRSH----VHRFFSFPHAYDFARHSWGPLVQLA 257 >gi|302683973|ref|XP_003031667.1| hypothetical protein SCHCODRAFT_55770 [Schizophyllum commune H4-8] gi|300105360|gb|EFI96764.1| hypothetical protein SCHCODRAFT_55770 [Schizophyllum commune H4-8] Length = 286 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 86/232 (37%), Gaps = 37/232 (15%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSK 61 P + A + + + G+DE GRG + GP+V + G DSK Sbjct: 11 FPLTASYTYHAPIPTASGKYILGVDEAGRGPVLGPLVYGVAYVAETGKERMEAMGFADSK 70 Query: 62 KISHKKREELYEKITSSAI---ISISSASHQYID-------KHNIHKATLDAI---YHAV 108 + +RE L E + S+ ++ S Q + N+++ + DA V Sbjct: 71 TLDAARREALLETLCSAPDVLGWAVRVISPQALSSGMLRRPPTNLNEQSRDATVMLIRGV 130 Query: 109 ENLQVIPRSALIDGRS--------IPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDR 159 + + +D + + P F V K DS + AAS+ AKVTRD Sbjct: 131 LARGIQLSAVFVDALGPTVAYEQWLSQRFPEIKFTVANKADSKFKIVGAASVAAKVTRDA 190 Query: 160 LMRIAHKKYPDYGFDSHVGYPT-AKHQQVIK-----EKGPSCIHRLTFRPLR 205 L+ ++P + GYP+ K + + G R ++ + Sbjct: 191 LID--ASRFPA---ERGSGYPSDPKTKAWLAAAVEPTFGFPRAVRFSWATSK 237 >gi|154318955|ref|XP_001558795.1| hypothetical protein BC1G_02429 [Botryotinia fuckeliana B05.10] gi|150856860|gb|EDN32052.1| hypothetical protein BC1G_02429 [Botryotinia fuckeliana B05.10] Length = 1493 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 82/228 (35%), Gaps = 48/228 (21%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGIN------DSKKISHKKREELYEKIT----- 76 GIDE GRG + GP+V L + DSK ++ R EL EK+ Sbjct: 70 GIDEAGRGPVLGPMVYGLFYLPLPLSDPLLRNTHHFDDSKVLTPTVRSELMEKLCTPGSD 129 Query: 77 --SSAIISISSASHQYIDKHNIHKATLDAIYHA----------VENLQVIPRSALIDG-- 122 + ++ S + I + + AT + A V + V + ID Sbjct: 130 LYTQCGWAVDVMSARDIGANMMKPATYNLNAQAMDSTIALIQGVMDKGVNVKEIYIDALG 189 Query: 123 ------RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 + + P V K DS+ ++AAS+ AKVTRD + ++ Y + D Sbjct: 190 NTVTYQKKLERIFPTAQITVAKKADSLYPCVSAASVCAKVTRDAALESLYESYMNKDGDQ 249 Query: 176 ----------HVGYPTAKHQQVIKEKGPSCIH------RLTFRPLRNL 207 GYP+ ++ I R ++ +++ Sbjct: 250 KMGGTEEDSWGSGYPSDARATTWLKRNMDPIFGWGSECRFSWGTTKDM 297 >gi|121702279|ref|XP_001269404.1| ribonuclease HI large subunit [Aspergillus clavatus NRRL 1] gi|119397547|gb|EAW07978.1| ribonuclease HI large subunit [Aspergillus clavatus NRRL 1] Length = 362 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 54/247 (21%), Positives = 89/247 (36%), Gaps = 57/247 (23%) Query: 16 AMVREKN--MWPVAGIDEVGRGALAGPVVVAAIILDPNNIP------FGINDSKKISHKK 67 + + E + V G+DE GRG + GP+V +A L + +DSK ++ Sbjct: 67 SSLSEHGSSEYFVLGVDEAGRGPVLGPMVYSAFYLPHTLHHSLLARDYSFDDSKVLTAGV 126 Query: 68 REELYEKIT-------SSAIISISSASHQYIDKHNIH-------------KATLDAIYHA 107 R L + +S + S + I + AT++ I Sbjct: 127 RANLMRLLCTAGNPLHASCGWATKLLSARDISSGMMRPGSGVYNLNAQAMDATVEIIRGI 186 Query: 108 VENLQVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRD 158 VE +V R ID P + + K DS+ ++AAS+ AKVTRD Sbjct: 187 VEERKVDVREVYIDTIGNPATYQQKLERIFPTLKITVAKKADSLYPCVSAASVAAKVTRD 246 Query: 159 RLMRIAHKKYP---------DYGFDS-HVGYPTA--------KHQQVIKEKGPSCIHRLT 200 + + H + + DS GYP+ KH + G C R + Sbjct: 247 VALELCHDAFQALQQLETSHEMATDSWGSGYPSDSKCVNWLRKHMDPVFGWGNEC--RFS 304 Query: 201 FRPLRNL 207 + + + Sbjct: 305 WGTSKEM 311 >gi|212538023|ref|XP_002149167.1| ribonuclease HI large subunit [Penicillium marneffei ATCC 18224] gi|210068909|gb|EEA23000.1| ribonuclease HI large subunit [Penicillium marneffei ATCC 18224] Length = 368 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 35/169 (20%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELYEKIT-- 76 V G+DE GRG + GP+V +A L + + +DSK ++ R L + I Sbjct: 71 CVLGVDEAGRGPVLGPMVYSAFYLPKHLERPLLTEEYSFDDSKVLTPVVRARLMQSICTP 130 Query: 77 -----SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRSA 118 S ++ S + I + AT++ I + + Sbjct: 131 GASLHDSCGWAVKLLSARDISAGMMRPSTGVYNLNAQAMDATIEIIRGVLNEKHINVTEV 190 Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRD 158 ID P + + K DS+ ++AAS++AKVTRD Sbjct: 191 YIDTIGNPATYQAKLQRLFPTLSITVAKKADSLYPCVSAASVVAKVTRD 239 >gi|183231893|ref|XP_001913636.1| ribonuclease H2 subunit A [Entamoeba histolytica HM-1:IMSS] gi|169802278|gb|EDS89588.1| ribonuclease H2 subunit A, putative [Entamoeba histolytica HM-1:IMSS] Length = 354 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 67/187 (35%), Gaps = 32/187 (17%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAIISIS 84 GIDE GRG + GP+V +A + G +DSK +S RE+L+ I S + S Sbjct: 17 IGIDEAGRGPVLGPMVYSAFFTTNTEVISTMGFHDSKILSRTMREKLFTDIKESGVCGFS 76 Query: 85 --SASHQYIDKHNI-----------HKATLDAIYHAVENLQVIPRSALID---------- 121 + YI + A D I+ + Q D Sbjct: 77 TRILTPSYISQMMCGPQKVSLNEIAFSAVRDIIHQIIRTSQRKIVHIYCDTVGPSKKYQA 136 Query: 122 --GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS---H 176 E Q K D + ++AASI AKVTRD + Y + + Sbjct: 137 MIANEFKEVKLSQITVCPKADGLYPVVSAASICAKVTRDTCLDNW--IYEETNIQTRQVG 194 Query: 177 VGYPTAK 183 GYP+ Sbjct: 195 CGYPSDV 201 >gi|156063040|ref|XP_001597442.1| hypothetical protein SS1G_01636 [Sclerotinia sclerotiorum 1980] gi|154696972|gb|EDN96710.1| hypothetical protein SS1G_01636 [Sclerotinia sclerotiorum 1980 UF-70] Length = 361 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 81/230 (35%), Gaps = 50/230 (21%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGIN------DSKKISHKKREELYEKIT----- 76 GIDE GRG + GP+V L + DSK ++ R EL +K+ Sbjct: 70 GIDEAGRGPVLGPMVYGLFYLPLPLSDPLLRNTHHFDDSKVLTPTVRSELMKKLCTPDSD 129 Query: 77 --SSAIISISSASHQYIDKHNIHKATLDAIYHA----------VENLQVIPRSALIDG-- 122 + ++ S + I + + AT + A V + V + ID Sbjct: 130 LYTQCGWAVDVLSARDIGANMMKPATYNLNAQAMDSTIALIQGVMDKGVNVKEIYIDALG 189 Query: 123 ------RSIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 + + P V K DS+ ++AAS+ AKVTRD + ++ Y D Sbjct: 190 NTVTYQKKLERIFPTAQITVAKKADSLYPCVSAASVCAKVTRDAALETLYESYVSKDGDQ 249 Query: 176 ------------HVGYPTAKHQQVIKEKGPSCIH------RLTFRPLRNL 207 GYP+ ++ I R ++ +++ Sbjct: 250 EMGGTEVAEDSWGSGYPSDARATAWLKRNMDPIFGWGSECRFSWGTTKDM 299 >gi|154288434|ref|XP_001545012.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150408653|gb|EDN04194.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 341 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 86/237 (36%), Gaps = 58/237 (24%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKREELYEK---- 74 V G+DE GRG + GP+V +A L + +DSK ++ + R L + Sbjct: 56 CVLGVDEAGRGPVLGPMVYSAFYLPLPLHHSLLAEEYHFDDSKVLTPEVRSSLMRQLSTP 115 Query: 75 ---ITSSAIISISSASHQYIDKHNIHKATLDAIYHA-------------VENLQVIPRSA 118 ++SS + S + I + T + +A V+ + + Sbjct: 116 GNSLSSSCGWGVKVMSARDIAAGMLRPGTRNYNLNAQAMDATTELIRCIVQERGINVKEV 175 Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRD--------RLM 161 ID PE + + K DS+ S++AAS+ AKVTRD +M Sbjct: 176 YIDTIGNPEAYQRKLEQIFPSLKITVAKKADSLYPSVSAASVCAKVTRDVALEICYRSMM 235 Query: 162 RIAHKKYP---DYGFDSHVGYPTAKH--------QQVIKEKGPSCIHRLTFRPLRNL 207 + + P G+ GYP+ + G C R ++ R L Sbjct: 236 KHCNAMEPERSGEGW--GSGYPSDSKCVGWLKNDMDKLFGWGLEC--RFSWGTAREL 288 >gi|190344386|gb|EDK36053.2| hypothetical protein PGUG_00151 [Meyerozyma guilliermondii ATCC 6260] Length = 343 Score = 100 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 81/231 (35%), Gaps = 42/231 (18%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELY 72 + K V G+DE GRG + GP+V + +G DSK + KR EL+ Sbjct: 65 LENKTASVVLGVDEAGRGPVLGPMVYGISYCLESYQEDLKHKYGFADSKVLKEDKRRELF 124 Query: 73 -------EKITSSAIISISSASHQYIDKHNI--------------HKATLDAIYHAVENL 111 ++ + + + + + I + T + V + Sbjct: 125 YMVESMDHELNENVGWATRTMTARDISSAMLQGRGAAGGANLNEQAHNTTIQLIREVLDS 184 Query: 112 QVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMR 162 V + +D P + + K DSI ++ AS++AKVTRD + Sbjct: 185 GVNVKKVFVDTVGPPATYQKKLQGIFPTLEITVTKKADSIFPIVSTASVVAKVTRDLNIH 244 Query: 163 IAHKKYPDY-GFDSHVGYPTA------KHQQVIKEKGPSCIHRLTFRPLRN 206 H + G GYP+ H V G + R +++ ++ Sbjct: 245 YYHDQLALLQGKVIGSGYPSDPNTSTWLHANVDPVFGWCPLVRFSWQTAKD 295 >gi|170590300|ref|XP_001899910.1| ribonuclease HI large subunit [Brugia malayi] gi|158592542|gb|EDP31140.1| ribonuclease HI large subunit, putative [Brugia malayi] Length = 282 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 30/172 (17%) Query: 27 AGIDEVGRGALAGPVVV-AAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI-- 80 GIDE GRG + GP+V A+ L N G++DSK ++ KREE++E++ S + Sbjct: 32 IGIDEAGRGPVLGPMVYTCAVTLVNNENMLTKIGVDDSKVLTEAKREEIFERMKGSNMSE 91 Query: 81 ---ISISSASHQYIDKHNI-----------HKATLDAIYHAVE-NLQVIPRSALIDGRSI 125 + S S Q I + H ++ + AV+ N+ V+ G Sbjct: 92 IFGYACRSVSAQMISAAMLGRTKYSLNKLSHDCAIELLKLAVDNNINVVDVYVDTVGPKD 151 Query: 126 P------EDLP-CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 P + P Q K D+ ++AAS+IAKV RDR +R +P+ Sbjct: 152 PYQAMLHKKFPDMQIIVSEKADAKFPIVSAASVIAKVKRDRALRNW--TFPE 201 >gi|310794509|gb|EFQ29970.1| ribonuclease HII [Glomerella graminicola M1.001] Length = 344 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 51/230 (22%), Positives = 89/230 (38%), Gaps = 49/230 (21%) Query: 25 PVA-GIDEVGRGALAGPVVVAAIILD-PNNIPF-----GINDSKKISHKKREELYEKIT- 76 PV G+DE GRG + GP+V L P + P +DSK ++ R +L + Sbjct: 66 PVCLGVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRETHHFDDSKVLTPAVRSQLMAALCT 125 Query: 77 ------SSAIISISSASHQYID--------KHNIHKATLDAIYHAVENL---QVIPRSAL 119 S +IS+ S + I +N++ +DA ++ + V + Sbjct: 126 AGSDLAESCGFAISALSARDISSGMMRPGANYNLNAQAMDATVELIKGVFAQGVNIQEIY 185 Query: 120 IDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMR-IAHKKYP 169 +D P + K DS+ ++AAS+ AKVTRD + + + P Sbjct: 186 VDTVGQPAAYQAKLQRFFPATKITVAKKADSLYPCVSAASVCAKVTRDAALEVLYKARAP 245 Query: 170 ----DYGFDSHVGYPT--------AKHQQVIKEKGPSCIHRLTFRPLRNL 207 + G GYP+ + + GP C R ++ +++ Sbjct: 246 ESVVEEGMAWGSGYPSDGRCVSWMKSNMHPVFGWGPEC--RFSWGTAKDM 293 >gi|146421659|ref|XP_001486774.1| hypothetical protein PGUG_00151 [Meyerozyma guilliermondii ATCC 6260] Length = 343 Score = 99.8 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 81/231 (35%), Gaps = 42/231 (18%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELY 72 + K V G+DE GRG + GP+V + +G DSK + KR EL+ Sbjct: 65 LENKTASVVLGVDEAGRGPVLGPMVYGISYCLESYQEDLKHKYGFADSKVLKEDKRRELF 124 Query: 73 -------EKITSSAIISISSASHQYIDKHNI--------------HKATLDAIYHAVENL 111 ++ + + + + + I + T + V +L Sbjct: 125 YMVELMDHELNENVGWATRTMTARDISSAMLQGRGAAGGANLNEQAHNTTIQLIREVLDL 184 Query: 112 QVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMR 162 V + +D P + + K DSI ++ AS++AKVTRD + Sbjct: 185 GVNVKKVFVDTVGPPATYQKKLQGIFPTLEITVTKKADSIFPIVSTASVVAKVTRDLNIH 244 Query: 163 IAHKKYPDY-GFDSHVGYPTA------KHQQVIKEKGPSCIHRLTFRPLRN 206 H + G GYP+ H V G + R ++ ++ Sbjct: 245 YYHDQLALLQGKVIGSGYPSDPNTSTWLHANVDPVFGWCPLVRFLWQTAKD 295 >gi|68469222|ref|XP_721398.1| likely Ribonuclease HII [Candida albicans SC5314] gi|68470247|ref|XP_720885.1| likely Ribonuclease HII [Candida albicans SC5314] gi|77022682|ref|XP_888785.1| hypothetical protein CaO19_6562 [Candida albicans SC5314] gi|46442777|gb|EAL02064.1| likely Ribonuclease HII [Candida albicans SC5314] gi|46443315|gb|EAL02598.1| likely Ribonuclease HII [Candida albicans SC5314] gi|76573598|dbj|BAE44682.1| hypothetical protein [Candida albicans] Length = 431 Score = 99.8 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 49/204 (24%), Positives = 79/204 (38%), Gaps = 38/204 (18%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVA-AIILD----PNNIPFGINDSKKISHKKREE 70 ++++ K V G+DE GRG + GP+V A L+ +G DSK ++ KREE Sbjct: 145 SILQNKTEPIVLGVDEAGRGPVLGPMVYGIAYSLESFSSKLQKEYGFADSKVLTDVKREE 204 Query: 71 LYEKITS-----SAIISISSASHQYID-----------------KHNIHKATLDAIYHAV 108 L+++I I ++ + D H T++ I V Sbjct: 205 LFKQIEDPDHELHKHIGWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTINLIKQ-V 263 Query: 109 ENLQVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDR 159 V +D P + K DSI ++ AS++AKVTRD Sbjct: 264 LAKGVKISKIFVDTVGPPVTYQAKLKRFFPEIDVTVTKKADSIYPIVSTASVVAKVTRDT 323 Query: 160 LMRIAHKKYPDY-GFDSHVGYPTA 182 ++ ++ P G GYP+ Sbjct: 324 NIKFYNENLPLLQGQKLGSGYPSD 347 >gi|269977901|ref|ZP_06184855.1| ribonuclease HII [Mobiluncus mulieris 28-1] gi|269933867|gb|EEZ90447.1| ribonuclease HII [Mobiluncus mulieris 28-1] Length = 278 Score = 99.8 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%) Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++K D + ++A A+++AKV RD M P YG+ +VGY T H++ I Sbjct: 208 KVQTLVKADQHAATVAGAAVLAKVYRDAFMSRLED--PGYGWSHNVGYGTKAHREAISRL 265 Query: 192 GPSCIHRLTFR 202 GPS HR T++ Sbjct: 266 GPSRWHRHTWK 276 Score = 91.3 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 8/107 (7%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI 80 V G+DEVGRGALAGPV + ++ + P G+NDSK ++ ++RE L + I S Sbjct: 36 LVGGMDEVGRGALAGPVCIGVTVVSATELAAGFPPGLNDSKALTARRREALVQPIQSWVK 95 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGR 123 +I A++ ID+ I A A + A+ L +P+ L+DG Sbjct: 96 DFAIGEATNMEIDEMGIMAAMRLAGWRALNQLDARGHLPQKLLLDGN 142 >gi|242807713|ref|XP_002485012.1| ribonuclease HI large subunit [Talaromyces stipitatus ATCC 10500] gi|218715637|gb|EED15059.1| ribonuclease HI large subunit [Talaromyces stipitatus ATCC 10500] Length = 386 Score = 99.8 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 87/255 (34%), Gaps = 76/255 (29%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELYEKIT-- 76 V G+DE GRG + GP+V +A L + + +DSK ++ R +L + I Sbjct: 85 CVLGVDEAGRGPVLGPMVYSAFYLPKDLEQSLLTQEHSFDDSKVLTPVVRAQLMQSICTP 144 Query: 77 -----SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRSA 118 S ++ S + I + AT++ I + + + Sbjct: 145 GQSLHDSCGWAVKLLSARDISAGMMRPGMGIYNLNAQAMDATVEIIRGVLNDKHINVTEI 204 Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRD----------- 158 ID P + + K DS+ ++AAS++AKVTRD Sbjct: 205 YIDTIGNPATYQAKLQRLFPTLSITVAKKADSLYPCVSAASVVAKVTRDVALESCYRAFY 264 Query: 159 ------------RLMRIAHKKYP------DYGFDSHVGYPTAKH-QQVIKE-------KG 192 +M + P + G+ GYP+ +++ G Sbjct: 265 QEPSQKTVDGDTNMMESSETIPPSVSKVEELGW--GSGYPSDSKCVNWLRQNMDSVFGWG 322 Query: 193 PSCIHRLTFRPLRNL 207 C R ++ + + Sbjct: 323 NEC--RFSWGTAKEM 335 >gi|238883322|gb|EEQ46960.1| ribonuclease HI large subunit [Candida albicans WO-1] Length = 427 Score = 99.4 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 49/202 (24%), Positives = 77/202 (38%), Gaps = 38/202 (18%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVA-AIILD----PNNIPFGINDSKKISHKKREELY 72 ++ K V G+DE GRG + GP+V A L+ +G DSK ++ KREEL+ Sbjct: 144 LQNKTEPIVLGVDEAGRGPVLGPMVYGIAYSLESFSSKLQKEYGFADSKVLTDVKREELF 203 Query: 73 EKITS-----SAIISISSASHQYID-----------------KHNIHKATLDAIYHAVEN 110 ++I I ++ + D H T++ I V Sbjct: 204 KQIEDPDHELHKHIGWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTINLIKQ-VLA 262 Query: 111 LQVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLM 161 V +D P + K DSI ++ AS++AKVTRD + Sbjct: 263 KGVKISKIFVDTVGPPVTYQAKLKRFFPEIDVTVTKKADSIYPIVSTASVVAKVTRDTNI 322 Query: 162 RIAHKKYPDY-GFDSHVGYPTA 182 + ++ P G GYP+ Sbjct: 323 KFYNENLPLLQGQKLGSGYPSD 344 >gi|315427583|dbj|BAJ49182.1| ribonuclease HII [Candidatus Caldiarchaeum subterraneum] Length = 212 Score = 99.4 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 29/207 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + G+DE GRG + GP+VVAA+ + + +P G+ DSK +S ++REE++EK+ +S + Sbjct: 2 LCGVDEAGRGCVVGPLVVAAVAAERDELPLLRALGVADSKTLSPRRREEIFEKLRASFRV 61 Query: 82 SISSASHQYID---KHNIHKATLDAIYHAVENL--QVIPRSALIDGRSI----------- 125 S + I + N D Y + L PR +D Sbjct: 62 GYMLVSPRRISSCLRVNGGDGLNDLEYGVMAELARSFRPRILFVDSPDRDVRRARRRLLE 121 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKH 184 + +++GD + +AAAS++AKV RDR + + ++ D+G GYP+ K Sbjct: 122 KLGVEMDVRCMVRGDRRHVLVAAASVVAKVVRDRKVAMLRRRLGDFG----SGYPSDPKT 177 Query: 185 QQVIKE-KG---PSCIHRLTFRPLRNL 207 ++ + E G R+ + L NL Sbjct: 178 RKWLLENLGQAAIKPYIRVGWATLENL 204 >gi|239613574|gb|EEQ90561.1| ribonuclease HI large subunit [Ajellomyces dermatitidis ER-3] gi|327352659|gb|EGE81516.1| ribonuclease [Ajellomyces dermatitidis ATCC 18188] Length = 343 Score = 99.4 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 80/240 (33%), Gaps = 64/240 (26%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKREELYEKITS- 77 V G+DE GRG + GP+V +A L + +DSK ++ R L + S Sbjct: 57 CVLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTPAVRSNLMHLLCSP 116 Query: 78 ------SAIISISSASHQYIDKHNIHKATLDAIYHA-------------VENLQVIPRSA 118 S + S + I + T + +A VE V R Sbjct: 117 DNSLSTSCGWGVKVMSARDISAGMLRPRTRNYNLNAQAMDATTELIRCIVEEKGVNVREV 176 Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 ID PE + V K DS+ S++AASI AKVTRD Y Sbjct: 177 YIDTIGNPETYQRKLERVFPSLKITVAKKADSLYPSVSAASICAKVTRD---VALEICYE 233 Query: 170 DY--------------GFDSHVGYPTAKH-QQVIKE-------KGPSCIHRLTFRPLRNL 207 G+ GYP+ +K G C R ++ R L Sbjct: 234 ALLKQRDTVKQDSTTEGW--GSGYPSDSKCVSWLKNDMDTLFGWGYEC--RFSWGTAREL 289 >gi|261192900|ref|XP_002622856.1| ribonuclease HI large subunit [Ajellomyces dermatitidis SLH14081] gi|239588991|gb|EEQ71634.1| ribonuclease HI large subunit [Ajellomyces dermatitidis SLH14081] Length = 343 Score = 99.4 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 80/240 (33%), Gaps = 64/240 (26%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKREELYEKITS- 77 V G+DE GRG + GP+V +A L + +DSK ++ R L + S Sbjct: 57 CVLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTPAVRSNLMHLLCSP 116 Query: 78 ------SAIISISSASHQYIDKHNIHKATLDAIYHA-------------VENLQVIPRSA 118 S + S + I + T + +A VE V R Sbjct: 117 DNSLSTSCGWGVKVMSARDISAGMLRPRTRNYNLNAQAMDATTELIRCIVEEKGVNVREV 176 Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 ID PE + V K DS+ S++AASI AKVTRD Y Sbjct: 177 YIDTIGNPETYQRKLERVFPSLKITVAKKADSLYPSVSAASICAKVTRD---VALEICYE 233 Query: 170 DY--------------GFDSHVGYPTAKH-QQVIKE-------KGPSCIHRLTFRPLRNL 207 G+ GYP+ +K G C R ++ R L Sbjct: 234 ALLKQRDTVKQDSATEGW--GSGYPSDSKCVSWLKNDMDTLFGWGYEC--RFSWGTAREL 289 >gi|225555530|gb|EEH03822.1| ribonuclease HI large subunit [Ajellomyces capsulatus G186AR] Length = 341 Score = 99.4 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 84/237 (35%), Gaps = 58/237 (24%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKREELYEK---- 74 V G+DE GRG + GP+V +A L + +DSK ++ R L + Sbjct: 56 CVLGVDEAGRGPVLGPMVYSAFYLPLPLHHSLLAEEYHFDDSKVLTPAVRSSLMRQLSTP 115 Query: 75 ---ITSSAIISISSASHQYIDKHNIHKATLDAIYHA-------------VENLQVIPRSA 118 ++SS + S + I + T + +A V+ + + Sbjct: 116 DNSLSSSCGWGVKVMSARDIAAGMLRPGTRNYNLNAQAMDATTELIRCIVQERGINVKEV 175 Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRD--------RLM 161 ID PE + + K DS+ S++AAS+ AKVTRD +M Sbjct: 176 YIDTIGNPEAYQRKLEQIFPSLKITVAKKADSLYPSVSAASVCAKVTRDVALEICYRSMM 235 Query: 162 RIAHKKYP---DYGFDSHVGYPTAKH--------QQVIKEKGPSCIHRLTFRPLRNL 207 + P G+ GYP+ + G C R ++ R L Sbjct: 236 EHCNAMEPESSGEGW--GSGYPSDSKCVGWLKNDMDKLFGWGHEC--RFSWGTAREL 288 >gi|46107902|ref|XP_381010.1| hypothetical protein FG00834.1 [Gibberella zeae PH-1] Length = 338 Score = 99.4 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 80/226 (35%), Gaps = 48/226 (21%) Query: 28 GIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELYEKIT----- 76 G+DE GRG + GP+V L + +DSK + R +L + Sbjct: 63 GVDEAGRGPVLGPMVYGVFFLPISLSDSLLRETHHFDDSKVLKPAVRSDLMRILCTPGSD 122 Query: 77 --SSAIISISSASHQYI--DKHNIHKATLDAI--------YHAVENLQVIPRSALIDGRS 124 S + +S S + I + + + L+A AV V + +D Sbjct: 123 LYESCGWATASLSARDIGANMYRPNAYNLNAQAMDATVDLIKAVYAAGVNVQEIFVDTIG 182 Query: 125 IPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIA------HKKYP 169 P + + K DS+ ++AAS+ AKVTRD + + ++ Sbjct: 183 QPAAYQAKLQRIFPTVKIIVAKKADSLYPCVSAASVCAKVTRDAALEVLFEARADGEEKG 242 Query: 170 DYGFDSHVGYPT--------AKHQQVIKEKGPSCIHRLTFRPLRNL 207 GYP+ + + GP C R ++ +++ Sbjct: 243 GEAMAWGSGYPSDGNCVSWMKNNMHPVFGWGPEC--RFSWGTAKDM 286 >gi|225684872|gb|EEH23156.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb03] Length = 343 Score = 99.4 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 83/237 (35%), Gaps = 58/237 (24%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKREELYEKIT-- 76 V G+DE GRG + GP+V +A L + +DSK ++ R L + Sbjct: 57 CVLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTPAVRTNLMRLLCTP 116 Query: 77 -----SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRSA 118 +S + S + I + AT++ I VE + V + Sbjct: 117 DHSLNTSCGWGVKVMSARDISTGMLRSGTGNYNLNAQAMDATIELIICIVEKMGVNVKEV 176 Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMR------- 162 ID PE + + K DS+ S++AAS+ AKVTRD + Sbjct: 177 YIDTVGNPETYQKKLKRIFPALKITVTKKADSLYPSVSAASVCAKVTRDVALELCYEALV 236 Query: 163 ----IAHKKYPDYGFDSHVGYPTAKH--------QQVIKEKGPSCIHRLTFRPLRNL 207 ++ G+ GYP+ + G C R ++ R L Sbjct: 237 KQRGAMEQEGAADGW--GSGYPSDSKCVGWLKNDMDSLFGWGNEC--RFSWGTAREL 289 >gi|226287752|gb|EEH43265.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb18] Length = 343 Score = 99.4 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 83/237 (35%), Gaps = 58/237 (24%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKREELYEKIT-- 76 V G+DE GRG + GP+V +A L + +DSK ++ R L + Sbjct: 57 CVLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTPAVRTNLMRLLCTP 116 Query: 77 -----SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRSA 118 +S + S + I + AT++ I VE + V + Sbjct: 117 DHSLNTSCGWGVKVMSARDISTGMLRSGTGNYNLNAQAMDATIELIICIVEKMGVNVKEV 176 Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMR------- 162 ID PE + + K DS+ S++AAS+ AKVTRD + Sbjct: 177 YIDTVGNPETYQKKLKRIFPALKITVTKKADSLYPSVSAASVCAKVTRDVALELCYEALV 236 Query: 163 ----IAHKKYPDYGFDSHVGYPTAKH--------QQVIKEKGPSCIHRLTFRPLRNL 207 ++ G+ GYP+ + G C R ++ R L Sbjct: 237 KQRGAMEQEGAADGW--GSGYPSDSKCVGWLKNDMDSLFGWGNEC--RFSWGTAREL 289 >gi|240273728|gb|EER37247.1| ribonuclease HI large subunit [Ajellomyces capsulatus H143] gi|325094841|gb|EGC48151.1| ribonuclease HI large subunit [Ajellomyces capsulatus H88] Length = 341 Score = 99.0 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 84/237 (35%), Gaps = 58/237 (24%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKREELYEK---- 74 V G+DE GRG + GP+V +A L + +DSK ++ R L + Sbjct: 56 CVLGVDEAGRGPVLGPMVYSAFYLPLPLHHSLLAEEYHFDDSKVLTPAVRSSLMRQLSTP 115 Query: 75 ---ITSSAIISISSASHQYIDKHNIHKATLDAIYHA-------------VENLQVIPRSA 118 ++SS + S + I + T + +A V+ + + Sbjct: 116 DNSLSSSCGWGVKVMSARDIAAGMLQPGTRNYNLNAQAMDATTELIRCIVQERGINVKEV 175 Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRD--------RLM 161 ID PE + + K DS+ S++AAS+ AKVTRD +M Sbjct: 176 YIDTIGNPEAYQRKLEQIFPSLQITVAKKADSLYPSVSAASVCAKVTRDVALEICYRSMM 235 Query: 162 RIAHKKYP---DYGFDSHVGYPTAKH--------QQVIKEKGPSCIHRLTFRPLRNL 207 + P G+ GYP+ + G C R ++ R L Sbjct: 236 EHCNAMEPESSGEGW--GSGYPSDSKCVGWLKNDMDKLFGWGHEC--RFSWGTAREL 288 >gi|303322466|ref|XP_003071226.1| ribonuclease H2 subunit A, putative [Coccidioides posadasii C735 delta SOWgp] gi|240110925|gb|EER29081.1| ribonuclease H2 subunit A, putative [Coccidioides posadasii C735 delta SOWgp] gi|320040565|gb|EFW22498.1| ribonuclease HI large subunit [Coccidioides posadasii str. Silveira] Length = 353 Score = 99.0 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 83/240 (34%), Gaps = 63/240 (26%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELYEKIT-- 76 V G+DE GRG + GP+V +A L + NDSK ++ R L + Sbjct: 69 CVLGVDEAGRGPVLGPMVYSAFYLPMPLHHSLLAEEHQFNDSKVLTPGIRSNLMRLLCTP 128 Query: 77 -----SSAIISISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRSA 118 S +I S + I AT++ I VE V + Sbjct: 129 DHPLHESCGWAIKLLSARDISSGMQRPGAAVYNLNAQAMDATVEIIRGVVEERGVDVKEV 188 Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLM----RIAH 165 ID P+ + + K D++ ++AAS+ AKVTRD + Sbjct: 189 YIDTIGNPQTYQKKLERIFPSLKITVAKKADALFPCVSAASVCAKVTRDAALEICYEELQ 248 Query: 166 KKYPDY--------GFDSHVGYPTAKH-QQVIKEKGPSCIH---------RLTFRPLRNL 207 K+ G+ GYP+ +K+ +H R ++ ++L Sbjct: 249 KQRAGMVEMEHMNDGW--GSGYPSDSKCVTWLKK----EMHPLFGWGNECRFSWGTAKDL 302 >gi|312379086|gb|EFR25480.1| hypothetical protein AND_09149 [Anopheles darlingi] Length = 346 Score = 98.6 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 88/233 (37%), Gaps = 57/233 (24%) Query: 28 GIDEVGRGALAG---------------------PVVVAAIILDPNNIP----FGINDSKK 62 G+DE GRG + G P+V + G DSK+ Sbjct: 51 GVDEAGRGPVLGKRDPEPYSERKMKLFCNPMLGPMVYGIAFCPLSKKDILKSLGFADSKQ 110 Query: 63 ISHKKREELYEKITSS-----AI-ISISSASHQYIDKHNIH--KATLDAI--------YH 106 ++ +KR+++++++ A+ ++ + S I + K +L+ + H Sbjct: 111 LTEEKRDQIFDEMNQKDYATEALGWAVEAISPNTISMSMLRRTKCSLNEVSMNSAIGLIH 170 Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTR 157 A V +D PE + + K DS ++AASI AKVTR Sbjct: 171 AAIEAGVNIAEVYVDTVGPPEKYQAKLKDIFPKFKITVAKKADSTYPIVSAASIAAKVTR 230 Query: 158 DRLMRIAH-KKYPDYGFDS-HVGYP----TAKHQ-QVIKEKGPSCIHRLTFRP 203 D +++ ++ P+ +S GYP T K +V G + R ++ Sbjct: 231 DHALKVWQFRERPNEEENSFGSGYPGDPTTKKFLGEVDLVFGFPRLVRFSWST 283 >gi|154345524|ref|XP_001568699.1| ribonuclease H [Leishmania braziliensis MHOM/BR/75/M2904] Length = 318 Score = 98.2 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 51/225 (22%) Query: 24 WPVAGIDEVGRGALAGPVVV-AAII-LDPNNIPF---GINDSKKISHKKREELYEKITS- 77 + + GIDE GRG + GP+V A+I L ++ + DSK + + R +++ Sbjct: 44 YLILGIDEAGRGPVIGPMVYTGAVISLGEHDDLVRLCHVADSKILDERHRLASLQQLRQL 103 Query: 78 ------SAIISISSASHQYIDKHNIHKATL------DAIYHAVENLQVIPRSALIDGRSI 125 + +S S + + TL I A +A +D Sbjct: 104 KTFRSFTVCVSPEEISSTMTGRSGRNLNTLSHETAVHIISEATLASAGKLCAAYVDTVGP 163 Query: 126 PEDLPC---------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 P+ + K DS ++AASI+AK TRD ++ + + Sbjct: 164 PDTYQARLAGRFPHLRVTVAKKADSKFPIVSAASIVAKTTRDTAIQELGE-------NIG 216 Query: 177 VGYPTAKH-QQVIKEKGPSCIH------------RLTFRPLRNLS 208 GYP+ ++ +H R ++ P+ L+ Sbjct: 217 SGYPSDPRAIAWLRSH----VHRFFVFRHVYGYVRHSWGPVVQLA 257 >gi|322505755|emb|CAM43828.2| putative ribonuclease H [Leishmania braziliensis MHOM/BR/75/M2904] Length = 318 Score = 98.2 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 51/225 (22%) Query: 24 WPVAGIDEVGRGALAGPVVV-AAII-LDPNNIPF---GINDSKKISHKKREELYEKITS- 77 + + GIDE GRG + GP+V A+I L ++ + DSK + + R +++ Sbjct: 44 YLILGIDEAGRGPVIGPMVYTGAVISLGEHDDLVRLCHVADSKILDERHRLASLQQLRQL 103 Query: 78 ------SAIISISSASHQYIDKHNIHKATL------DAIYHAVENLQVIPRSALIDGRSI 125 + +S S + + TL I A +A +D Sbjct: 104 KTFRSFTVCVSPEEISSTMTGRSGRNLNTLSHETAVHIISEATLASAGKLCAAYVDTVGP 163 Query: 126 PEDLPC---------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 P+ + K DS ++AASI+AK TRD ++ + + Sbjct: 164 PDTYQARLAGRFPHLRVTVAKKADSKFPIVSAASIVAKTTRDTAIQELGE-------NIG 216 Query: 177 VGYPTAKH-QQVIKEKGPSCIH------------RLTFRPLRNLS 208 GYP+ ++ +H R ++ P+ L+ Sbjct: 217 SGYPSDPRAIAWLRSH----VHRFFVFRHVYGYVRHSWGPVVQLA 257 >gi|169596915|ref|XP_001791881.1| hypothetical protein SNOG_01231 [Phaeosphaeria nodorum SN15] gi|111069760|gb|EAT90880.1| hypothetical protein SNOG_01231 [Phaeosphaeria nodorum SN15] Length = 345 Score = 98.2 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 79/234 (33%), Gaps = 51/234 (21%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELYEKIT-- 76 V G+DE GRG + GP+V A L + +DSKK++ + R +L +I Sbjct: 59 VVLGVDEAGRGPVLGPMVYALFYLPVELHHSLLADTHHFDDSKKLTPEVRSDLMRRICTP 118 Query: 77 -----SSAIISISSASHQYIDKHNIHKATLDAIYHA----------VENLQVIPRSALID 121 + + S S Q I H + + A V V ID Sbjct: 119 GTDLYEAGGWATRSLSAQDISAHMLSPNVYNLNAQAMDATIDLIKEVLAKGVNVTEIYID 178 Query: 122 GRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY---- 168 PE + + K DS+ ++AAS+ AKVTRD + + + Y Sbjct: 179 TIGRPETYQRKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRDAAINVCYAPYHSRA 238 Query: 169 ---------PDYGFDSHVGYPTAKHQQVIKEKGPSCIH------RLTFRPLRNL 207 GYP+ ++ + R ++ + L Sbjct: 239 LEAGTAAENAKVNVAWGSGYPSDSKTSTWLKQNMDPLFGWGNECRFSWGTAKEL 292 >gi|119196321|ref|XP_001248764.1| hypothetical protein CIMG_02535 [Coccidioides immitis RS] Length = 353 Score = 98.2 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 83/240 (34%), Gaps = 63/240 (26%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELYEKIT-- 76 V G+DE GRG + GP+V +A L + NDSK ++ R L + Sbjct: 69 CVLGVDEAGRGPVLGPMVYSAFYLPMPLHHSLLAEEHQFNDSKVLTPGIRSNLMRLLCTP 128 Query: 77 -----SSAIISISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRSA 118 S +I S + I AT++ I VE V + Sbjct: 129 DHPLHESCGWAIKLLSARDISSGMQRPGAAVYNLNAQAMDATVEIIRGVVEERGVDVKEV 188 Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLM----RIAH 165 ID P+ + + K D++ ++AAS+ AKVTRD + Sbjct: 189 YIDTIGNPQTYQKKLERIFPSLKITVAKKADALFPCVSAASVCAKVTRDAALEICYEELQ 248 Query: 166 KKYPDY--------GFDSHVGYPTAKH-QQVIKEKGPSCIH---------RLTFRPLRNL 207 ++ G+ GYP+ +K+ +H R ++ ++L Sbjct: 249 RQRAGMVEMEHMNNGW--GSGYPSDSKCVTWLKK----EMHPLFGWGNECRFSWGTAKDL 302 >gi|67537888|ref|XP_662718.1| hypothetical protein AN5114.2 [Aspergillus nidulans FGSC A4] gi|40743105|gb|EAA62295.1| hypothetical protein AN5114.2 [Aspergillus nidulans FGSC A4] gi|259484559|tpe|CBF80886.1| TPA: ribonuclease HI large subunit (AFU_orthologue; AFUA_1G07600) [Aspergillus nidulans FGSC A4] Length = 339 Score = 97.8 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 35/170 (20%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELYEKIT- 76 + + GIDE GRG + GP+V +A L + + + NDSK ++ R L + Sbjct: 62 YLILGIDEAGRGPVLGPMVYSAFYLPSSLHHSLLSEEYSFNDSKVLTAGVRANLMRILCT 121 Query: 77 ------SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRS 117 S + S + I + AT++ I VE ++ R Sbjct: 122 QGSPLHESCGWATKLLSARDISSGMMRPAAGVYNLNAQAMDATIELIRGVVEERKLNVRE 181 Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRD 158 ID P + V K DS+ ++AAS++AKVTRD Sbjct: 182 VYIDTIGNPASYQKKLEMVFPSLRITVAKKADSLYPCVSAASVVAKVTRD 231 >gi|302657829|ref|XP_003020627.1| hypothetical protein TRV_05276 [Trichophyton verrucosum HKI 0517] gi|291184480|gb|EFE40009.1| hypothetical protein TRV_05276 [Trichophyton verrucosum HKI 0517] Length = 361 Score = 97.8 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 84/246 (34%), Gaps = 65/246 (26%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELY------ 72 V GIDE GRG + GP+V +A L + +DSK ++ + R L Sbjct: 67 CVLGIDEAGRGPVLGPMVYSAFYLPIHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLCTQ 126 Query: 73 -EKITSSAIISISSASHQYIDKHNI--------------HKATLDAIYHAVENLQVIPRS 117 + S ++ S + I + AT++ I VE + + Sbjct: 127 GHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQGIDVKE 186 Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRI----- 163 +D PE + V K DS+ ++AAS+ AKVTRD + Sbjct: 187 VYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESW 246 Query: 164 AHKKYPDYGFDS--------------HVGYPT--------AKHQQVIKEKGPSCIHRLTF 201 +++ ++ GYP+ K + G C R ++ Sbjct: 247 LNQREKQRTLETGEDEATTADEILTWGSGYPSDGKCVGWLKKDMNRLFGWGVEC--RFSW 304 Query: 202 RPLRNL 207 + L Sbjct: 305 GTSKEL 310 >gi|189195170|ref|XP_001933923.1| ribonuclease HI large subunit [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187979802|gb|EDU46428.1| ribonuclease HI large subunit [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 342 Score = 97.8 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 76/234 (32%), Gaps = 54/234 (23%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELYEKITSS 78 V G+DE GRG + GP+V A L + +DSK ++ + R L K+ + Sbjct: 59 VVLGVDEAGRGPVLGPMVYALFYLPIELHHSLLADTHHFDDSKVLTPEVRSNLMRKLCTK 118 Query: 79 AI-------ISISSASHQYIDKHNIHKATLDAIYHA----------VENLQVIPRSALID 121 + S Q I H + + + A V V ID Sbjct: 119 GSDLYDAGGWATRLLSAQDISAHMLSPSVYNLNAQAMDATIDLIKGVLAQGVNVTEIYID 178 Query: 122 GRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 PE + + K DS+ ++AAS+ AKVTRD Y Y Sbjct: 179 TIGKPEIYQRKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRD---AALDVCYEPYH 235 Query: 173 -------------FDSHVGYPTAKH-QQVIKE-----KGPSCIHRLTFRPLRNL 207 GYP+ +K+ G R ++ + L Sbjct: 236 NRNNEAERGTDVKVAWGSGYPSDARTTTWLKQNMDPLFGWGSETRFSWGTAKEL 289 >gi|150864655|ref|XP_001383577.2| hypothetical protein PICST_31007 [Scheffersomyces stipitis CBS 6054] gi|149385911|gb|ABN65548.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 347 Score = 97.8 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 49/194 (25%), Positives = 75/194 (38%), Gaps = 36/194 (18%) Query: 25 PVAGIDEVGRGALAGPVVVA-AIILDPN----NIPFGINDSKKISHKKREELYEKITSSA 79 V G+DE GRG + GP+V A L+ +G DSK + +KR+EL+ I A Sbjct: 71 VVLGVDEAGRGPVLGPMVYGIAFALEKYSTRLQKEYGFADSKTLKEEKRDELFYSIEDEA 130 Query: 80 -----------------IISISSA-SHQYIDKHNIHKATLDAIYHAVENL---QVIPRSA 118 IS S I +N+++ D ++ + V + Sbjct: 131 NELNRNVGWATTTMTARDISSGMLRSVLGIGNYNLNEQAHDTTIQLIKEVIAKGVNVKKI 190 Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIA-HKKY 168 +D P + + K DSI ++ AS++AKVTRD +R H Sbjct: 191 YVDTVGPPVTYQAKLQKIFPETEVTVAKKADSIYPIVSTASVMAKVTRDANIRWYNHNLD 250 Query: 169 PDYGFDSHVGYPTA 182 G GYP+ Sbjct: 251 VLKGHKLGSGYPSD 264 >gi|302510819|ref|XP_003017361.1| hypothetical protein ARB_04241 [Arthroderma benhamiae CBS 112371] gi|291180932|gb|EFE36716.1| hypothetical protein ARB_04241 [Arthroderma benhamiae CBS 112371] Length = 361 Score = 97.8 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 84/246 (34%), Gaps = 65/246 (26%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREEL------- 71 V GIDE GRG + GP+V +A L + +DSK ++ + R L Sbjct: 67 CVLGIDEAGRGPVLGPMVYSAFYLPIHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLCTQ 126 Query: 72 YEKITSSAIISISSASHQYIDKHNI--------------HKATLDAIYHAVENLQVIPRS 117 + S ++ S + I + AT++ I VE + + Sbjct: 127 SHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQGINVKE 186 Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRI----- 163 +D PE + V K DS+ ++AAS+ AKVTRD + Sbjct: 187 VYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESW 246 Query: 164 AHKKYPD----YGFDS----------HVGYPT--------AKHQQVIKEKGPSCIHRLTF 201 +++ G D GYP+ K + G C R ++ Sbjct: 247 LNQREKQRTLVTGEDEATTADEILTWGSGYPSDGKCVGWLKKDMNRLFGWGVEC--RFSW 304 Query: 202 RPLRNL 207 + L Sbjct: 305 GTSKEL 310 >gi|326472233|gb|EGD96242.1| ribonuclease H2 subunit A [Trichophyton tonsurans CBS 112818] Length = 361 Score = 97.8 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 85/246 (34%), Gaps = 65/246 (26%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELY------ 72 V GIDE GRG + GP+V +A L + +DSK ++ + R L Sbjct: 67 CVLGIDEAGRGPVLGPMVYSAFYLPIHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLCTK 126 Query: 73 -EKITSSAIISISSASHQYIDKHNI--------------HKATLDAIYHAVENLQVIPRS 117 + S ++ S + I + AT++ I VE ++ + Sbjct: 127 GHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNSQALDATIEIIRGVVETQRIDVKE 186 Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRI----- 163 +D PE + V K DS+ ++AAS+ AKVTRD + Sbjct: 187 VYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESW 246 Query: 164 AHKKYPD----YGFDS----------HVGYPT--------AKHQQVIKEKGPSCIHRLTF 201 +++ G D GYP+ K + G C R ++ Sbjct: 247 LNQREKQKTLATGEDKTATAEEILTWGSGYPSDGKCVGWLKKDMNRLFGWGAEC--RFSW 304 Query: 202 RPLRNL 207 + L Sbjct: 305 GTSKEL 310 >gi|221481429|gb|EEE19819.1| ribonuclease HI large subunit, putative [Toxoplasma gondii GT1] gi|221501972|gb|EEE27722.1| ribonuclease HI large subunit, putative [Toxoplasma gondii VEG] Length = 366 Score = 97.4 bits (242), Expect = 9e-19, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 28/175 (16%) Query: 18 VREKNMWPV-AGIDEVGRGALAGPVVVAAIIL-----DPNNIPFGINDSKKISHKKREEL 71 + PV GIDE GRG + G +V A ++DSKK+ +REE Sbjct: 14 FHKCGGKPVRLGIDEAGRGCVLGAMVYACFFCAAEDEKKELKALNVDDSKKLKEWEREEA 73 Query: 72 YEKITSSAI---ISISSASHQYI-------DKHNIHKATLDAIYHAV-----ENLQVIPR 116 +E I + SI + + I K+++++ + D + + V Sbjct: 74 FEAIQAKRDLFGWSIHAIRSEEISAKMLRKKKYSLNEISHDTAISLILRTVKSGVNVTEV 133 Query: 117 SALIDGR------SIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIA 164 G + P V K DS+ ++AASI+AKVTRDR++ Sbjct: 134 FVDTVGNANAYQAKLKAHFPSIKIKVAEKADSLFPVVSAASILAKVTRDRMLVRW 188 >gi|237844165|ref|XP_002371380.1| ribonuclease HI large subunit, putative [Toxoplasma gondii ME49] gi|211969044|gb|EEB04240.1| ribonuclease HI large subunit, putative [Toxoplasma gondii ME49] Length = 366 Score = 97.4 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 28/175 (16%) Query: 18 VREKNMWPV-AGIDEVGRGALAGPVVVAAIIL-----DPNNIPFGINDSKKISHKKREEL 71 + PV GIDE GRG + G +V A ++DSKK+ +REE Sbjct: 14 FHKCGGKPVRLGIDEAGRGCVLGAMVYACFFCAAEDEKKELKALNVDDSKKLKEWEREEA 73 Query: 72 YEKITSSAI---ISISSASHQYI-------DKHNIHKATLDAIYHAV-----ENLQVIPR 116 +E I + SI + + I K+++++ + D + + V Sbjct: 74 FEAIQAKRDLFGWSIHAIRSEEISAKMLRKKKYSLNEISHDTAISLILRTVKSGVNVTEV 133 Query: 117 SALIDGR------SIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIA 164 G + P V K DS+ ++AASI+AKVTRDR++ Sbjct: 134 FVDTVGNANAYQAKLKAHFPSIKIKVAEKADSLFPVVSAASILAKVTRDRMLVRW 188 >gi|149004283|ref|ZP_01829060.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS69] gi|147757777|gb|EDK64791.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS69] Length = 134 Score = 97.4 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 37/56 (66%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E + ++ + +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI K+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKE 113 >gi|322699282|gb|EFY91045.1| Ribonuclease H2 subunit A [Metarhizium acridum CQMa 102] Length = 337 Score = 97.1 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 79/230 (34%), Gaps = 52/230 (22%) Query: 28 GIDEVGRGALAGPVVVAAIILD-PNNIPF-----GINDSKKISHKKREELYEKIT----- 76 G+DE GRG + GP+V L P + P +DSK ++ R L + Sbjct: 58 GVDEAGRGPVLGPMVYGIFYLPLPQSGPLLRDTHHFDDSKALTAAARSSLMRALCTEGTD 117 Query: 77 --SSAIISISSASHQYIDKHNIHKA---TLDAI--------YHAVENLQVIPRSALIDGR 123 + + ++ S + I + A L+A + R +D Sbjct: 118 LHAQCGWATAALSARDISAGMLRPAGVYNLNAQAVDATVALIRGALKRGLNIREVYVDTV 177 Query: 124 SIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIA---------H 165 P + V K DS+ ++AAS+ AKVTRD + Sbjct: 178 GQPAAHQARLQRVFPTTKITVAKKADSLYPCVSAASVCAKVTRDAALEALYGARRDGDGD 237 Query: 166 KKYPDYGFDSHVGYPTAKH-QQVIKE-------KGPSCIHRLTFRPLRNL 207 + G + GYP+ ++ GP C R ++ +++ Sbjct: 238 GEGAAAGMEWGSGYPSDARCVGWLRRNMHPVFGWGPEC--RFSWGTAKDM 285 >gi|330925767|ref|XP_003301184.1| hypothetical protein PTT_12627 [Pyrenophora teres f. teres 0-1] gi|311324289|gb|EFQ90711.1| hypothetical protein PTT_12627 [Pyrenophora teres f. teres 0-1] Length = 332 Score = 97.1 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 78/233 (33%), Gaps = 53/233 (22%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELYEKITSS 78 V G+DE GRG + GP+V A L + +DSK ++ + R L K+ + Sbjct: 50 VVLGVDEAGRGPVLGPMVYALFYLPTELHHSLLADTHHFDDSKVLTPEVRSNLMRKLCTK 109 Query: 79 AI-------ISISSASHQYIDKHNIHKATLDAIYHA----------VENLQVIPRSALID 121 + S Q I H + + + A V V ID Sbjct: 110 GSDLYDAGGWATRLLSAQDISAHMLSPSVYNLNAQAMDATIDLIKGVLAQGVNVTEIYID 169 Query: 122 GRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY- 171 PE + + K DS+ ++AAS+ AKVTRD Y Y Sbjct: 170 TIGKPEIYQRKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRD---AALDVCYEPYH 226 Query: 172 -------GFDS----HVGYPTAKH-QQVIKE-----KGPSCIHRLTFRPLRNL 207 G D GYP+ +K+ G R ++ + L Sbjct: 227 HRNEAERGADVKVVWGSGYPSDARTTTWLKQNMDPLFGWGSETRFSWGTAKEL 279 >gi|315044861|ref|XP_003171806.1| ribonuclease H2 subunit A [Arthroderma gypseum CBS 118893] gi|311344149|gb|EFR03352.1| ribonuclease H2 subunit A [Arthroderma gypseum CBS 118893] Length = 362 Score = 96.7 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 68/175 (38%), Gaps = 36/175 (20%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELYEKIT-- 76 V GIDE GRG + GP+V +A L + + +DSK ++ + R L + Sbjct: 67 CVLGIDEAGRGPVLGPMVYSAFYLPIHLHNSLLADEHHFDDSKVLTPEVRSNLMRSLCTQ 126 Query: 77 -----SSAIISISSASHQYIDKHNI--------------HKATLDAIYHAVENLQVIPRS 117 +S ++ S + I + AT++ I VE + + Sbjct: 127 GHSLHNSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQGIDVKE 186 Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRI 163 +D PE + V K DS+ ++AAS+ AKVTRD + Sbjct: 187 VYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEA 241 >gi|326483287|gb|EGE07297.1| ribonuclease HI large subunit [Trichophyton equinum CBS 127.97] Length = 323 Score = 96.7 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 85/246 (34%), Gaps = 65/246 (26%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELY------ 72 V GIDE GRG + GP+V +A L + +DSK ++ + R L Sbjct: 67 CVLGIDEAGRGPVLGPMVYSAFYLPIHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLCTK 126 Query: 73 -EKITSSAIISISSASHQYIDKHNI--------------HKATLDAIYHAVENLQVIPRS 117 + S ++ S + I + AT++ I VE ++ + Sbjct: 127 GHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNSQALDATIEIIRGVVETQRIDVKE 186 Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRI----- 163 +D PE + V K DS+ ++AAS+ AKVTRD + Sbjct: 187 VYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESW 246 Query: 164 AHKKYPD----YGFDS----------HVGYPT--------AKHQQVIKEKGPSCIHRLTF 201 +++ G D GYP+ K + G C R ++ Sbjct: 247 LNQREKQKTLATGEDKTATAEEILTWGSGYPSDGKCVGWLKKDMNRLFGWGAEC--RFSW 304 Query: 202 RPLRNL 207 + L Sbjct: 305 GTSKEL 310 >gi|9664592|gb|AAF97195.1|AF268611_19 ribonuclease HII [uncultured marine group II euryarchaeote 37F11] Length = 250 Score = 96.7 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 84/223 (37%), Gaps = 39/223 (17%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKIT 76 ++ + G+DE GRG + GP+VV + + + I DSK +SH KR+ Y+ + Sbjct: 2 RDKMRLIGVDEAGRGPVLGPLVVGLLSIPKEDEYMLEEQCIEDSKHLSHAKRKLHYDWLN 61 Query: 77 SSA-----IISISSASHQYID-----------KHNIHKATLDAIYHAV-ENLQVIPRSAL 119 + ID + ++ + L+ + + L ++ + Sbjct: 62 QQVTERGWYVDTIICKPNRIDNAVYAKGLNILEVDLFASILNRHHRLFTQELDILLDACD 121 Query: 120 ID----GRSIPE---DLPCQAFAVI---KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 ++ I E D P +I K D+ + ASI+AKV RD + Sbjct: 122 VNEERFSNRISERLTDWPWLKTTMIAEHKADTNHRIVGGASILAKVVRDMEIERIAV--- 178 Query: 170 DYGFDSHVGYPT-----AKHQQVIKEKGPSCIHRLTFRPLRNL 207 D G GYP +IKE G R ++ ++ Sbjct: 179 DVGAPVGSGYPADPNTVKALPYLIKEDGIHEEIRWSWATVKRF 221 >gi|11387103|sp|Q9P5X8|RNH2A_NEUCR RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|7800995|emb|CAB91392.1| probable 35 kDa ribonuclease H [Neurospora crassa] Length = 317 Score = 96.3 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 83/234 (35%), Gaps = 48/234 (20%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN------DSKKISHKKREE 70 + N G+DE GRG + GP+V +A L + DSK ++ R Sbjct: 36 QLLADNTPCCLGVDEAGRGPVLGPMVYSAFYLPLTLSDPLLKQKHSFDDSKVLTPAVRLS 95 Query: 71 LYEKITSS-----------------AIISISSASHQYIDKHNIHKATLDAIYHAVENL-- 111 L +++ + IS +N+++ +DA ++ + Sbjct: 96 LMKELCTKDTELHDNCGYATSSLSPLSISSGMLKASKAQIYNLNQQAMDATIALIKGIYE 155 Query: 112 -QVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLM 161 V ID P + V K DS+ ++AAS++AKVTRD Sbjct: 156 RGVNVTDIFIDTIGQPAAYQKKLERVFPTAKITVAKKADSLYPVVSAASVVAKVTRD--- 212 Query: 162 RIAHKKYPDYGFDSHVGYPTAKH-QQVIKE-------KGPSCIHRLTFRPLRNL 207 + D GYP+ +K+ GP C R ++ +++ Sbjct: 213 IALEVLWADRTMAWGSGYPSDSKCVSWLKQNMHPVFGWGPEC--RFSWGTAKDM 264 >gi|258569747|ref|XP_002543677.1| conserved hypothetical protein [Uncinocarpus reesii 1704] gi|237903947|gb|EEP78348.1| conserved hypothetical protein [Uncinocarpus reesii 1704] Length = 352 Score = 96.3 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 83/237 (35%), Gaps = 58/237 (24%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKREELYEK---- 74 V G+DE GRG + GP+V +A L + NDSK ++ R L Sbjct: 68 CVLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFNDSKVLTPGVRSNLMRLLCTP 127 Query: 75 ---ITSSAIISISSASHQYID-------------KHNIHKATLDAIYHAVENLQVIPRSA 118 + S ++ S + I AT++ I VE V + Sbjct: 128 GHSLQKSCGWAVKLLSARDISAGMQRPGAGMYNLNAQAMDATVEIIRGVVEERGVDVKEV 187 Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRI----AH 165 ID P+ + + K DS+ ++AAS+ AKVTRD + I Sbjct: 188 YIDTIGNPQSYQKKLEMIFPSLKITVAKKADSLFPCVSAASVCAKVTRDSALDICYEALQ 247 Query: 166 KKYPDYGFDS-----HVGYPTAKH-QQVIKEKGPSCIH---------RLTFRPLRNL 207 K+ G + GYP+ +K+ +H R ++ + L Sbjct: 248 KERVGKGMEHMNDGWGSGYPSDSKCTSWLKK----EMHPLFGWGNECRFSWGTAKEL 300 >gi|327297598|ref|XP_003233493.1| ribonuclease HI large subunit [Trichophyton rubrum CBS 118892] gi|326464799|gb|EGD90252.1| ribonuclease HI large subunit [Trichophyton rubrum CBS 118892] Length = 361 Score = 96.3 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 66/175 (37%), Gaps = 36/175 (20%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELY------ 72 V GIDE GRG + GP+V +A L + +DSK ++ + R L Sbjct: 67 CVLGIDEAGRGPVLGPMVYSAFYLPVHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLCTQ 126 Query: 73 -EKITSSAIISISSASHQYIDKHNI--------------HKATLDAIYHAVENLQVIPRS 117 + S ++ S + I + AT++ I VE + + Sbjct: 127 GHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETHGIDVKE 186 Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRI 163 +D PE + V K DS+ ++AAS+ AKVTRD + Sbjct: 187 VYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEA 241 >gi|149235450|ref|XP_001523603.1| ribonuclease HI large subunit [Lodderomyces elongisporus NRRL YB-4239] gi|146452582|gb|EDK46838.1| ribonuclease HI large subunit [Lodderomyces elongisporus NRRL YB-4239] Length = 414 Score = 95.9 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 83/229 (36%), Gaps = 54/229 (23%) Query: 28 GIDEVGRGALAGPVVVAAII-----LDPNNIPFGINDSKKISHKKREELYEKITSSAI-- 80 G+DE GRG + GP+V L +G DSK+++ KRE L++ + + I Sbjct: 137 GVDEAGRGPVLGPMVYGIAYSLLSFLKCLQKQYGFADSKQLTGDKRELLFKMMEDTHIEN 196 Query: 81 -----ISISSASHQYID------------------KHNIHKATLDAIYHAVENLQVIPRS 117 + ++ + D H AT++ + + V + Sbjct: 197 GLSKHVGWATTTMTAKDISLGMLRLVSNGKGVYNLNEQAHDATIEL-IRLILSKGVNITA 255 Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 +D P + + K DSI ++ AS++AKVTRD ++ A++ Sbjct: 256 IYVDTVGPPATYQAKLKKLFPTIDITVTKKADSIYPIVSTASVVAKVTRDLNLKYANQ-- 313 Query: 169 PDYGFDSH----VGYPTAKHQQVIKEKGPSCIH-------RLTFRPLRN 206 + GYP+ + I R +++ ++ Sbjct: 314 -HINLLKNHALGSGYPSDPNTSFWLNHNVDPIFGWCFGFIRFSWQTAKD 361 >gi|145605665|ref|XP_370462.2| hypothetical protein MGG_06959 [Magnaporthe oryzae 70-15] gi|145013464|gb|EDJ98105.1| hypothetical protein MGG_06959 [Magnaporthe oryzae 70-15] Length = 312 Score = 95.9 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 82/208 (39%), Gaps = 37/208 (17%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD-PNNIPF-----GINDSKKISHKKREELYEKITSS 78 V G+DE GRG + GP+V L P + P +DSK ++ R L E + + Sbjct: 56 CVLGVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRETHHFDDSKVLTPAVRSSLMESLCTP 115 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV-I 137 + + + + +D+ ++ A + V+ + + + P V Sbjct: 116 TLSQSAGSLNSVMDR-GVNVAEI-----YVDTVGPPAAY----QKKLERFFPTAKVTVSK 165 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIA------------HKKYPDYGFDSHVGYPTAKHQ 185 K DS+ ++AAS+ AKVTRD + + + + G+ GYP+ Sbjct: 166 KADSLYPCVSAASVCAKVTRDAALEVLYKNVLSEIAKAEGGEDEEIGW--GSGYPSDARC 223 Query: 186 QVIKEKGPSCIH------RLTFRPLRNL 207 ++ + R ++ ++++ Sbjct: 224 VGWLKRNMHPVFGWGTECRFSWGTVKDM 251 >gi|145479147|ref|XP_001425596.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124392667|emb|CAK58198.1| unnamed protein product [Paramecium tetraurelia] Length = 297 Score = 95.9 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 41/227 (18%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-----INDSKKISHKKREELYEK 74 ++N GIDE GRG + GP++ A+ DSK+I+ R++L++ Sbjct: 27 KQNFDWQLGIDEAGRGPVLGPMLYASCYWPTKYHKLISETCKFVDSKQINEAARDKLFDV 86 Query: 75 IT----SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--- 127 +T + +Y+ K+ + T++ + + +SA+ G I E Sbjct: 87 LTQLKGKVLTFETRELTAEYLSKNQLAHLTINLNDISHNTAAELIQSAIQKGYKITEIFV 146 Query: 128 ------------------DLPCQAFAVI--KGDSISLSIAAASIIAKVTRD-RLMRIAHK 166 ++ +A V+ K DS +++AASI AKVTRD R+ I + Sbjct: 147 DTVGPKQTYKNFLQGKLQEIGKEANIVVEEKADSKYANVSAASICAKVTRDYRITLIQQE 206 Query: 167 KYPDYGFDSHVGYP----TAKHQQ--VIKEKGPSCIHRLTFRPLRNL 207 P GYP T K+ + I R +++ ++ + Sbjct: 207 ILP--NDSIGSGYPGDPKTKKYLENTNIPFFVYPKYVRFSWQTIKTI 251 >gi|323449222|gb|EGB05112.1| hypothetical protein AURANDRAFT_12637 [Aureococcus anophagefferens] Length = 229 Score = 95.5 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 82/221 (37%), Gaps = 35/221 (15%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAI---ILDPNNIPF---GINDSKKISHKKREELYE 73 + GIDE GRG + G + I D + I I+DSK+++ +KR +L++ Sbjct: 4 RRGEAVKLGIDEAGRGPVLGAMTFGTCYWSIADDDAIEASQKEIDDSKQLTDEKRSKLFD 63 Query: 74 KI-----TSSA--IISISSASHQY--IDKHNIHKATLDAIYHAVENL---QVIPRSALID 121 +I A ++S + S + + +++ + DA ++ + A +D Sbjct: 64 RIAADERMGWAVEVVSAARISAEMLQVKPTSLNAISFDATCRLIQRVLDRGADVVEAFVD 123 Query: 122 GRSIPEDL----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 P+ + K D++ AASI AKV RD + P Sbjct: 124 TVGNPDSYSERLTRAFDGKIKFTVAKKADALYKCTGAASICAKVCRDLSIARWTYDEPGV 183 Query: 172 -GFDSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLR 205 D GYP+ + G R ++ P + Sbjct: 184 DDLDFGSGYPSDPACVAWLARNVHGVFGYPNFCRFSWAPAK 224 >gi|295658160|ref|XP_002789642.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb01] gi|226283127|gb|EEH38693.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb01] Length = 343 Score = 95.1 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 83/237 (35%), Gaps = 58/237 (24%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKREELYEKIT-- 76 V G+DE GRG + GP++ +A L + +DSK ++ R L + Sbjct: 57 CVLGVDEAGRGPVLGPMIYSAFYLPLSLHHSLLAKEHHFDDSKVLTPAVRTNLMRLLCTP 116 Query: 77 -----SSAIISISSASHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRSA 118 +S + S + I + AT++ I VE + V + Sbjct: 117 DHSLNTSCGWGVKVLSARDISTGMLRSGTGNYNLNAQAMDATIELIICIVEKMGVNVKEV 176 Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMR------- 162 ID PE + + K DS+ S++AAS+ AKVTRD + Sbjct: 177 YIDTIGNPETYQKKLKRIFPALKITVTKKADSLYPSVSAASVCAKVTRDVALELCYEALV 236 Query: 163 ----IAHKKYPDYGFDSHVGYPTAKH--------QQVIKEKGPSCIHRLTFRPLRNL 207 ++ G+ GYP+ + G C R ++ R L Sbjct: 237 KQRGAMEQEGAADGW--GSGYPSDSKCVGWLKNDMDSLFGWGNEC--RFSWGTAREL 289 >gi|294654510|ref|XP_456567.2| DEHA2A05632p [Debaryomyces hansenii CBS767] gi|199428939|emb|CAG84523.2| DEHA2A05632p [Debaryomyces hansenii] Length = 375 Score = 94.4 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 83/225 (36%), Gaps = 43/225 (19%) Query: 25 PVAGIDEVGRGALAGPVVVA-AIILDPNNIPF----GINDSKKISHKKREELYEKITS-- 77 V G+DE GRG + GP+V A L+ + G DSK + KR +L++ I + Sbjct: 88 VVLGVDEAGRGPVLGPMVYGIAYSLESYSKDLQTKYGFADSKTLKDDKRRQLFQMIENED 147 Query: 78 ---SAIISISSASHQYID------KHNIHKATLDAIYHA----------VENLQVIPRSA 118 + ++ + D + + K + + A V V Sbjct: 148 HELHGHVGWATTTMTAKDISSGMLQTVLGKGSYNLNEQAHDTTIQLIKQVLAKGVNVTKV 207 Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 +D P + + K DSI ++ AS++AKVTRD + + P Sbjct: 208 FVDTVGPPASYQAKLSKIFPTVAITVAKKADSIYPIVSTASVVAKVTRDLNLHFYNIHLP 267 Query: 170 -DYGFDSHVGYPTA------KHQQVIKEKGPSC-IHRLTFRPLRN 206 + GYP+ H V + G + R +++ ++ Sbjct: 268 LIHNHALGSGYPSDPNTSKWLHANVDRVFGWCFGLVRFSWQTSKD 312 >gi|241957291|ref|XP_002421365.1| ribonuclease large subunit, putative [Candida dubliniensis CD36] gi|223644709|emb|CAX40699.1| ribonuclease large subunit, putative [Candida dubliniensis CD36] Length = 366 Score = 94.4 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 48/195 (24%), Positives = 73/195 (37%), Gaps = 38/195 (19%) Query: 25 PVAGIDEVGRGALAGPVVVA-AIILD----PNNIPFGINDSKKISHKKREELYEKITS-- 77 V G+DE GRG + G +V A L+ +G DSK ++ KREEL+++I Sbjct: 90 IVLGVDEAGRGPVLGAMVYGIAYSLESFSSKLQKEYGFADSKVLTDVKREELFKQIEDPE 149 Query: 78 ---SAIISISSASHQYID-----------------KHNIHKATLDAIYHAVENLQVIPRS 117 I ++ + D H T+D I V V Sbjct: 150 HELHKHIGWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTIDLIKQ-VLAKGVKISK 208 Query: 118 ALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 +D P + K DSI ++ AS++AKVTRD ++ ++ Sbjct: 209 IFVDTVGPPVTYQAKLKRFFPEIDVTVTKKADSIYPIVSTASVVAKVTRDTNIKFYNENL 268 Query: 169 PDY-GFDSHVGYPTA 182 P G GYP+ Sbjct: 269 PLLQGQKLGSGYPSD 283 >gi|154333788|ref|XP_001563149.1| ribonuclease hii [Leishmania braziliensis MHOM/BR/75/M2904] gi|134060161|emb|CAM45568.1| putative ribonuclease HII [Leishmania braziliensis MHOM/BR/75/M2904] Length = 255 Score = 93.6 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 70/248 (28%), Positives = 101/248 (40%), Gaps = 77/248 (31%) Query: 37 LAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSA--------------- 79 +AGPV VAA + + P + + DSK++ R E E + + Sbjct: 1 MAGPVSVAATLYRVSATPVRYTVGDSKRMKESARAETLEAMCAELSDAGIKGFLETTMRD 60 Query: 80 ---------------IISISSASHQYIDKHNIHKATLDAI----------YHAVENLQVI 114 +S + I NI ATL+ + Y+AV LQ++ Sbjct: 61 GACCVVRYQQRQPLQAVSAVLVDIEVIHGRNILNATLEGMSAVCNTIVRSYNAVRGLQIL 120 Query: 115 P---RSALIDGRSIP---------------------------EDLPC----QAFAVIKGD 140 + LIDG +P D P AVIKGD Sbjct: 121 TPLTCAILIDGNRVPWTFLSSEERQQVRMQAVKNVEARKRIGVDYPVLDGFGCTAVIKGD 180 Query: 141 SISLSIAAASIIAKVTRDRL-MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 + LSIAAAS++AKV RD M + H+ +P YGFD H GY TA H+ + GPS HR+ Sbjct: 181 ATVLSIAAASVVAKVARDAYVMTVMHRAFPHYGFDYHKGYCTAAHKMELARWGPSRFHRV 240 Query: 200 TFRPLRNL 207 + P++ + Sbjct: 241 DYAPVKAV 248 >gi|325969836|ref|YP_004246028.1| ribonuclease HII [Vulcanisaeta moutnovskia 768-28] gi|323709039|gb|ADY02526.1| ribonuclease HII [Vulcanisaeta moutnovskia 768-28] Length = 198 Score = 93.6 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 46/196 (23%), Positives = 84/196 (42%), Gaps = 36/196 (18%) Query: 41 VVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITSSAI--ISISSASHQYIDKHNI 96 +V+A ++ + N G+ DSK++S + R L+ I S + I ID++ Sbjct: 1 MVIAIVVTNDMNKLREIGVKDSKELSPESRSRLF-IILKSILNYIDYEIIEPVIIDRYVN 59 Query: 97 HKA--------TLDAIYHAVENLQVIPRSALIDGRSIPEDL-----------PCQAFAVI 137 A T+ I A+ N+QV + ID + A+ Sbjct: 60 MNALNILEVEVTIKLINKALSNIQV--HTIYIDSPDPKPERFRDMIMERVGGNVNVIAMN 117 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH-----QQVIKEKG 192 K D + ++AASI+AKV RD ++ H+++ D+G GYP+ ++ I++ G Sbjct: 118 KADKLIPVVSAASIVAKVVRDSIIERLHREFGDFG----SGYPSDPRTIAFLKRWIEKHG 173 Query: 193 -PSCIHRLTFRPLRNL 207 I R ++ + + Sbjct: 174 DLPPIVRRSWSTAKKM 189 >gi|71024097|ref|XP_762278.1| hypothetical protein UM06131.1 [Ustilago maydis 521] gi|46101780|gb|EAK87013.1| hypothetical protein UM06131.1 [Ustilago maydis 521] Length = 551 Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 63/175 (36%), Gaps = 31/175 (17%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80 V G+DE GRG + GP+V + G DSK ++ ++R+ L + Sbjct: 89 CVLGVDEAGRGPVLGPLVYGIAYCPVSYQDDLKQIGFADSKALTAERRDSLLSALIDQNS 148 Query: 81 ---ISISSASHQYIDKHNIHKATLDAIYHA----------VENLQVIPRSALIDGRSIPE 127 ++ S Q I + + ++ + V V +D P+ Sbjct: 149 HLGWAVRVMSPQDISAGMLRRRPINLNAQSSQATVSLIAGVLESGVDLTEIYVDTVGDPK 208 Query: 128 DLP------------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 + K D+I + AASI AKVTRDR + +Y + Sbjct: 209 SYSKLLSSYFPRHSHIKWTVTSKADAIYPIVGAASIAAKVTRDRCVD--AWRYAE 261 >gi|293363602|ref|ZP_06610358.1| ribonuclease HII [Mycoplasma alligatoris A21JP2] gi|292552951|gb|EFF41705.1| ribonuclease HII [Mycoplasma alligatoris A21JP2] Length = 245 Score = 92.4 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 55/203 (27%), Positives = 76/203 (37%), Gaps = 39/203 (19%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKI-SHKKREELYEKIT 76 N + G+DE G G GP+V AA+ + N G+ DSK I + K+ L +I Sbjct: 25 NQLNIIGVDETGVGDYFGPLVTAAVFIPNNLLEYFKNLGVKDSKLIKNEKQIHYLANEIK 84 Query: 77 SSAIISISSASH---QYIDKH--NIHKATLDAIYHAVENL-------QVIPRSALIDGRS 124 S S+ ID + NIHK A HA+ +L V ID + Sbjct: 85 SKCYYKTYVLSNSGYNKIDNNYKNIHKLKFFAHSHAINSLEELLSLRNVKIDYIFIDQYT 144 Query: 125 I-------------------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165 + K +SI LS+AAASI+A R L+ Sbjct: 145 TLNAFNKYYDEIIILNNWSKINEFKSPILLAHKAESIHLSVAAASILA---RAELLDSFK 201 Query: 166 KKYPDYGFDSHVGYPTAKHQQVI 188 K Y FD +G QV+ Sbjct: 202 KIKEIYNFDFLLGANQKVKNQVV 224 >gi|116200221|ref|XP_001225922.1| hypothetical protein CHGG_08266 [Chaetomium globosum CBS 148.51] gi|88179545|gb|EAQ87013.1| hypothetical protein CHGG_08266 [Chaetomium globosum CBS 148.51] Length = 344 Score = 92.4 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 85/229 (37%), Gaps = 51/229 (22%) Query: 28 GIDEVGRGALAGPVVVAAIILD-PNNIPF-----GINDSKKISHKKREELYEKIT----- 76 G+DE GRG + GP+V L P + P +DSK ++ R L E + Sbjct: 63 GVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRTTHHFDDSKVLTPAVRASLMETLCTPTSD 122 Query: 77 --SSAIISISSASHQYI---------DKHNIHKATLDAIYHAVENL---QVIPRSALIDG 122 S ++ + S + I +N++ +DA ++ + V R +D Sbjct: 123 LYESCGWAVDALSARDIGAGMLRPGLGAYNLNAQAMDATVELIKGVYARGVNVREIYVDT 182 Query: 123 RSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG- 172 P + V K DS+ S++AAS+ AKVTRD + K G Sbjct: 183 IGQPAAYQAKLARVFPAAKVTVAKKADSLYPSVSAASVCAKVTRDVALETLWKARGGGGE 242 Query: 173 ------FDSHVGYPTAKH-QQVIKE-------KGPSCIHRLTFRPLRNL 207 GYP+ +K GP C R ++ +++ Sbjct: 243 EGVEETMAWGSGYPSDGRCVTWLKSNMHPVWGWGPEC--RFSWGTAKDM 289 >gi|156375344|ref|XP_001630041.1| predicted protein [Nematostella vectensis] gi|156217054|gb|EDO37978.1| predicted protein [Nematostella vectensis] Length = 569 Score = 92.4 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 27/155 (17%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI-- 80 GIDE GRG + GP+V + G DSK ++ ++RE L+++++ + Sbjct: 31 VGIDEAGRGPVLGPMVYGICYCPLSKAEELKTTGFADSKTLTEEEREALFKELSENCHGY 90 Query: 81 --ISISSASHQ----------YIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 I + + + + + + + V + +D E Sbjct: 91 MGWVIDILTPNFLSNCMLQRTKCSLNEVSHNSAIGLIRLLLDSGVKVQEVYVDTVGPAEK 150 Query: 129 LPCQAFAVI---------KGDSISLSIAAASIIAK 154 + + K D+ ++AAS+ AK Sbjct: 151 YQDKLQKIFPEQKIVVTPKADAKFPVVSAASVCAK 185 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 60/165 (36%), Gaps = 32/165 (19%) Query: 46 IILDPNNIPFGIN--DSKKISHKKREELYEKITSSAI----ISISSASHQ---------- 89 +I I+ DSK ++ ++RE L+++++ + I + Sbjct: 311 VIYTQGTHLVAIDTQDSKTLTEEEREALFKELSENCHGYMGWVIDILTPNFLSNCMLQRT 370 Query: 90 YIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI---------KGD 140 + + + + + + V + +D E + + K D Sbjct: 371 KCSLNEVSHNSAIGLIRLLLDSGVKVQEVYVDTVGPAEKYQDKLQKIFPEQKIVVTPKAD 430 Query: 141 SISLSIAAASIIAKVTRDRLMRIA----HKKYPDYGFDSHVGYPT 181 + ++AAS+ AKV+RDR++ + ++ GYP+ Sbjct: 431 AKFPVVSAASVCAKVSRDRVISAWEFSEDIIFTK---ETGSGYPS 472 >gi|316974057|gb|EFV57595.1| ribonuclease H2 subunit A [Trichinella spiralis] Length = 418 Score = 92.4 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 28/162 (17%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYE---------- 73 G+DE GRG + GP+V A + +N+ DSK ++ +R +++ Sbjct: 183 GVDEAGRGPVLGPMVYACGVCVTDNLEQLSTLKAKDSKTLTEDERSTIFKNMQSEKNSHL 242 Query: 74 -----KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 K+ S IS S + + I T + V + V+ ++D E Sbjct: 243 FAYTMKLLSPVYISKSMLGRSKYNLNEISHDTAMELIQIVCDAGVVVDKVILDTVGPTEK 302 Query: 129 LPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLM 161 + + K DS+ ++AASI AKVTRD + Sbjct: 303 YEAKLRSRFPKIDILVSKKADSLHTIVSAASICAKVTRDNHL 344 >gi|328462264|gb|EGF34369.1| ribonuclease HII [Lactobacillus rhamnosus MTCC 5462] Length = 93 Score = 92.4 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 2/73 (2%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81 VAG+DEVGRG LAGPVV AA+IL P+ + +NDSK+++ +R+ LY I + AI + Sbjct: 4 YSHVAGLDEVGRGPLAGPVVTAAVIL-PHQFKWPVNDSKQLTAHERDVLYPHILTEAIAV 62 Query: 82 SISSASHQYIDKH 94 I A + ID+ Sbjct: 63 GIGVADNHEIDRE 75 >gi|302413253|ref|XP_003004459.1| ribonuclease H2 subunit A [Verticillium albo-atrum VaMs.102] gi|261357035|gb|EEY19463.1| ribonuclease H2 subunit A [Verticillium albo-atrum VaMs.102] Length = 264 Score = 92.4 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 46/175 (26%), Positives = 71/175 (40%), Gaps = 36/175 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILD-PNNIPF-----GINDSKKISHKKREELYEKIT----- 76 GIDE GRG + GP+ AA L P + P +DSK ++ R L + Sbjct: 72 GIDEAGRGPVLGPMTYAAFYLPMPLSDPLLRETHHFDDSKVLTPAVRSALMRALCSPSTD 131 Query: 77 --SSAIISISSASHQYI--------DKHNIHKATLDAIYHAVENL---QVIPRSALIDGR 123 +S ++ S S + I + +N++ DA ++ + V +D Sbjct: 132 LAASCGYAVRSLSARDIASGMLSTANPYNLNAQAFDATVEIIKGVIARGVRVEEIYVDTV 191 Query: 124 SIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRD---RLMRIAHK 166 P + V K DS+ ++AAS+ AKVTRD +M AHK Sbjct: 192 GQPAAYQAKLQRVFPSVKITVAKKADSLYPCVSAASVCAKVTRDAALEVMYEAHK 246 >gi|260946247|ref|XP_002617421.1| hypothetical protein CLUG_02865 [Clavispora lusitaniae ATCC 42720] gi|238849275|gb|EEQ38739.1| hypothetical protein CLUG_02865 [Clavispora lusitaniae ATCC 42720] Length = 345 Score = 92.4 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 74/194 (38%), Gaps = 36/194 (18%) Query: 25 PVAGIDEVGRGALAGPVVVAAIIL-----DPNNIPFGINDSKKISHKKREELYEKI---- 75 V G+DE GRG + GP+V D +G DSK + R+EL++ I Sbjct: 72 VVLGVDEAGRGPVLGPMVYGISYCLRDYQDHLKKKYGFADSKTLKDSTRQELFQLIDNEK 131 Query: 76 ---TSSAIISISSASHQYIDKHNIHKA----TLDAIYHAVENLQVIPRSALIDGR----- 123 + + + + + I + A + + A + + + L+ G Sbjct: 132 HELHKNVGWATCTMTAKDISNGMLRSALGAGSYNLNEQAHDTTIQLIKDVLLSGVNVREI 191 Query: 124 -------------SIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 + + P V K DSI ++ AS++AKVTRD ++ ++ Sbjct: 192 FVDTVGPPVSYQAKLKKHFPSIDITVTKKADSIYPIVSTASVVAKVTRDLNLQWYNENVE 251 Query: 170 D-YGFDSHVGYPTA 182 + G GYP+ Sbjct: 252 NLIGKCLGSGYPSD 265 >gi|218281130|ref|ZP_03487665.1| hypothetical protein EUBIFOR_00226 [Eubacterium biforme DSM 3989] gi|218217644|gb|EEC91182.1| hypothetical protein EUBIFOR_00226 [Eubacterium biforme DSM 3989] Length = 282 Score = 92.0 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 44/192 (22%), Positives = 67/192 (34%), Gaps = 25/192 (13%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKRE 69 LE +K AG DEVG G GPVVVA+ I+ GI DSK++ K Sbjct: 62 LEPATPQKEAQDQAGSDEVGTGDYFGPVVVASCIVTKEAREKLSHLGIQDSKQVDDTKIR 121 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQV--------IPRSALID 121 +L I SI + + + +D V +P+ +ID Sbjct: 122 KLAPLIKDVCPHSILIVPNSKYNDMHDSCNMVDMKCRLHNQAYVNLIHKGYTLPKQIVID 181 Query: 122 GR-------SIPEDLPCQAFAV---IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 + P + K ++ L++A ASI+A R+ + Y Sbjct: 182 QFVQEKIYYRYLQGFPEVIRGITFETKAENKYLAVACASILA---RNAFLEAWDLMEEKY 238 Query: 172 GFDSHVGYPTAK 183 F G + Sbjct: 239 DFKFEKGAGSKV 250 >gi|324575207|gb|ADY49933.1| Ribonuclease HII [Ascaris suum] Length = 60 Score = 91.7 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 38/58 (65%) Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++I ASI+AKV RD+ M KKYP YG++ H GY T H I++ GPS HRLT+ Sbjct: 1 MAIKLASIVAKVRRDKYMARLAKKYPHYGYEIHKGYGTKAHMAAIRKHGPSAAHRLTY 58 >gi|167524000|ref|XP_001746336.1| hypothetical protein [Monosiga brevicollis MX1] gi|163775098|gb|EDQ88723.1| predicted protein [Monosiga brevicollis MX1] Length = 596 Score = 91.7 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 51/255 (20%), Positives = 86/255 (33%), Gaps = 72/255 (28%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80 V G+DE GRG + GP+V A G DSK++S KR+EL++ I +A Sbjct: 300 CVLGVDEAGRGPVLGPMVYAVAFAPLSENARMKKLGFADSKQLSEAKRDELFKVIKENAD 359 Query: 81 IS---ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL-------- 129 + + I + + + A E+ + + G I EDL Sbjct: 360 WMGWKVHMLAASDISAGMLSRTKHNLNAQAHESTVDLVKRLHAQGVQIKEDLTYRLRLNH 419 Query: 130 ------------------------PCQAFAVIKGDSISLS------------IAAA---- 149 ++ + ++ IA A Sbjct: 420 RQLYVDTVGKAHIYQQQLENWLRPTIPNIKIVVESKLCVTHRVSDLCVLILDIANADVTY 479 Query: 150 ------SIIAKVTRDRLMRIAHKKYP---DYGFDSHVGYP----TAKHQQVIKE--KGPS 194 SI AKVTRD ++ ++P + D GYP T + + + G Sbjct: 480 PIVSAASICAKVTRDAVLTYW--RHPEQREIDNDFGCGYPGDSSTKAWLRKVLDPIFGFP 537 Query: 195 CIHRLTFRPLRNLSV 209 + R ++ R+L + Sbjct: 538 SLVRFSWSTARDLLL 552 >gi|218883330|ref|YP_002427712.1| Ribonuclease HII [Desulfurococcus kamchatkensis 1221n] gi|218764946|gb|ACL10345.1| Ribonuclease HII [Desulfurococcus kamchatkensis 1221n] Length = 255 Score = 91.3 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 45/213 (21%), Positives = 84/213 (39%), Gaps = 35/213 (16%) Query: 27 AGIDEVGRGALAGPVVVAAII-LDPNNIPF---GINDSKKISHKKREELYEKITSSAI-I 81 G+DE GRG G +V+A +I L G+ DSK + KR + + S I I Sbjct: 9 IGVDEAGRGPFIGDMVIAGVIGLSSAFESLVSIGLRDSKLLEPLKRLMILNNMLSLDIDI 68 Query: 82 SISSASHQYIDKHNIHKAT---------LDAIYHAVENLQVIPRSALIDGRSIPEDL--- 129 + S +ID+ N++ + H + Q ID D Sbjct: 69 VATYVSPIHIDRSNMNMLEYTVICSILKYLSYSHILRQHQGTGVRIYIDEVKGYNDKIGE 128 Query: 130 --------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + F + D+ +++AAS++AK+ RD ++ + G GYP+ Sbjct: 129 CARGLYRGNVEIFIESRADAKYPAVSAASVVAKILRDSNIKALQVIAGETG----SGYPS 184 Query: 182 -AKHQQVIKEK----GPSCIH-RLTFRPLRNLS 208 ++ + G ++ R ++ +++L+ Sbjct: 185 DPVSRRWLANMYRDDGEPPVYIRKSWGIVKDLA 217 >gi|296810182|ref|XP_002845429.1| ribonuclease H2 subunit A [Arthroderma otae CBS 113480] gi|238842817|gb|EEQ32479.1| ribonuclease H2 subunit A [Arthroderma otae CBS 113480] Length = 342 Score = 90.9 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 21/158 (13%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELYEKITSS 78 V GIDE GRG + GP+V +A L + +DS S K+ S+ Sbjct: 67 CVLGIDEAGRGPVLGPMVYSAFYLPMHLHKSLLAEEHHFDDS--HSLHNSCGWAVKVMSA 124 Query: 79 AIISISSASHQYIDKHNIH----KATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 IS +N++ AT++ I VE ++ + +D PE + Sbjct: 125 RDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQRIDVKEVYVDTIGKPETHQARLL 184 Query: 135 AVI---------KGDSISLSIAAASIIAKVTRDRLMRI 163 V K DS+ S++AAS+ AKVTRD + Sbjct: 185 RVFPGLKITVAKKADSLYPSVSAASVCAKVTRDAALEA 222 >gi|325294626|ref|YP_004281140.1| ribonuclease HIII [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065074|gb|ADY73081.1| ribonuclease HIII [Desulfurobacterium thermolithotrophum DSM 11699] Length = 270 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 17/158 (10%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS 82 G DE G+G GP+VVA + D N + G+ DSK +S +K ++ E+I Sbjct: 75 VGCDEAGKGEFVGPLVVACVCADKNCLRKLLDLGVKDSKALSREKILKMAEEIKKYCRGR 134 Query: 83 ISSASHQYIDKH-----NIHKATLDAIYHAVENL--QVIPRSALIDGRS------IPEDL 129 + +K N+++ D + +L + P+ ++D S + E Sbjct: 135 VKVIMPFQYNKLYEKYKNLNRLLEDIYVELIGSLLAKYSPQEVIVDKFSSRIEPLLKEKF 194 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 +F V+ L +AAASI+AK R + M K+ Sbjct: 195 KNTSFKVVPKAEKDLVVAAASIVAKAERLKAMEKLSKE 232 >gi|266625485|ref|ZP_06118420.1| ribonuclease HII [Clostridium hathewayi DSM 13479] gi|288862611|gb|EFC94909.1| ribonuclease HII [Clostridium hathewayi DSM 13479] Length = 78 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 32/64 (50%), Positives = 39/64 (60%), Gaps = 4/64 (6%) Query: 13 ELEAM-VREKNMW---PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 LE M E+ V GIDE GRG LAGPVV A+IL + +NDSKK+S K+R Sbjct: 15 RLEQMKSYERQYGDHILVCGIDEAGRGPLAGPVVAGAVILPGDCEILFLNDSKKLSEKRR 74 Query: 69 EELY 72 EEL+ Sbjct: 75 EELF 78 >gi|15790853|ref|NP_280677.1| ribonuclease HII [Halobacterium sp. NRC-1] gi|169236599|ref|YP_001689799.1| ribonuclease HII [Halobacterium salinarum R1] gi|74568991|sp|Q9HNR3|RNH2_HALSA RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043604|sp|B0R6T4|RNH2_HALS3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|10581416|gb|AAG20157.1| RNAase H [Halobacterium sp. NRC-1] gi|167727665|emb|CAP14453.1| ribonuclease HII [Halobacterium salinarum R1] Length = 212 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 22/198 (11%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87 G+DE G+G + G + AA+ DP +P G+ DSK++S +R EL +++ +S + ++ Sbjct: 5 GVDEAGKGPVLGSMFAAAVAGDPAAVPDGVADSKRLSADRRAELDDRVRASMRVGVAEVP 64 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPR--SALIDGRSIPEDLPCQ-----------AF 134 ID TL A +V+ + +D + E + Sbjct: 65 VDRIDDPETDMNTLTVAAQADALGRVVADGMAGYVDAGDVNEQRFGRRVANRVAADVAVT 124 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----TAKHQQV-IK 189 A D +AAASI+AKV RD + + D GYP T + ++ Sbjct: 125 AEHGADDEYDLVAAASIVAKVARDAHVDALAAAFDA---DIGSGYPSDSTTREFLAAYVR 181 Query: 190 EKGPSCI-HRLTFRPLRN 206 E G R +++ R+ Sbjct: 182 EHGELPECARASWQTSRD 199 >gi|297517117|ref|ZP_06935503.1| ribonuclease HII [Escherichia coli OP50] Length = 69 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 39/56 (69%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKAL 66 >gi|302927067|ref|XP_003054420.1| hypothetical protein NECHADRAFT_75114 [Nectria haematococca mpVI 77-13-4] gi|256735361|gb|EEU48707.1| hypothetical protein NECHADRAFT_75114 [Nectria haematococca mpVI 77-13-4] Length = 343 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 70/192 (36%), Gaps = 36/192 (18%) Query: 28 GIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELYEKIT----- 76 G+DE GRG + GP+V L +DSK ++ R +L + Sbjct: 71 GVDEAGRGPVLGPMVYGVFFLPLTISDSLLRDTHHFDDSKVLTAAVRSKLMRTLCTPGSD 130 Query: 77 --SSAIISISSASHQYIDKHNIHKAT---LDAI--------YHAVENLQVIPRSALIDGR 123 + +I + S + I +H T L+A A V + +D Sbjct: 131 LHTECGWAIKALSARDITTGMLHPTTTYNLNAQALDATVDLIKAAYAAGVNVQEIYVDTV 190 Query: 124 SIP--------EDLPCQAFAVI-KGDSISLSIAAASIIAKVTRD---RLMRIAHKKYPDY 171 P P V K DS+ ++AAS+ AKVTRD ++ A + + Sbjct: 191 GPPASHQAKLQRFFPTAKITVTKKADSLFACVSAASVCAKVTRDATLEVLSDAKGELTEN 250 Query: 172 GFDSHVGYPTAK 183 G GY + K Sbjct: 251 GMGWGSGYSSDK 262 >gi|319789920|ref|YP_004151553.1| ribonuclease HIII [Thermovibrio ammonificans HB-1] gi|317114422|gb|ADU96912.1| ribonuclease HIII [Thermovibrio ammonificans HB-1] Length = 270 Score = 89.4 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 27/195 (13%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS 82 G DE G+G GP+VVA I+ D I G+ DSKK+S++K EEL +IT + Sbjct: 75 IGCDEAGKGEFVGPLVVACIVADEKCLKRLIELGVKDSKKLSNEKVEELASEITETCHGK 134 Query: 83 ISSASHQYIDK-----HNIHKATLDAIYHAVENL--QVIPRSALIDGRSIPEDLPCQAFA 135 + + ++ NI++ V +L + P+ ++D Sbjct: 135 VKLLIPEKYNRAYSKFKNINRLLEAVYREIVSDLCEKFSPKVVVVD--KFSNRAEEVLKD 192 Query: 136 VIKGDSI--------SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 V+KG + L++AAASI+AK R + M+ K++ + + G Sbjct: 193 VVKGARLEVRPKAEDDLAVAAASIVAKAVRLKTMKELEKRFKVKLPEGNTG------LAE 246 Query: 188 IKEKGPSCIHRLTFR 202 + +K P +H F+ Sbjct: 247 LLKKTPKELHEKLFK 261 >gi|315425616|dbj|BAJ47275.1| ribonuclease HII [Candidatus Caldiarchaeum subterraneum] Length = 189 Score = 89.4 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 51/180 (28%), Positives = 87/180 (48%), Gaps = 25/180 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + G+DE GRG + GP+VVAA+ + + +P G+ DSK +S ++REE++EK+ +S + Sbjct: 2 LCGVDEAGRGCVVGPLVVAAVAAERDELPLLRALGVADSKTLSPRRREEIFEKLRASFRV 61 Query: 82 SISSASHQYID---KHNIHKATLDAIYHAVENL--QVIPRSALIDGRSI----------- 125 S + I + N D Y + L PR +D Sbjct: 62 GYMLVSPRRISSCLRVNGGDGLNDLEYGVMAELARSFRPRILFVDSPDRDVRRARRRLLE 121 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKH 184 + +++GD + +AAAS++AKV RDR + + ++ D+G GYP+ +H Sbjct: 122 KLGVEMDVRCMVRGDRRHVLVAAASVVAKVVRDRKVAMLRRRLGDFG----SGYPSDPRH 177 >gi|171689874|ref|XP_001909876.1| hypothetical protein [Podospora anserina S mat+] gi|170944899|emb|CAP71010.1| unnamed protein product [Podospora anserina S mat+] Length = 342 Score = 89.0 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 87/242 (35%), Gaps = 61/242 (25%) Query: 25 PVA-GIDEVGRGALAGPVVVAAIILDPNNIPFGIN------DSKKISHKKREELYEKI-- 75 PV G+DE GRG + GP+V L + DSK ++ + R L + + Sbjct: 53 PVCLGVDEAGRGPVLGPMVYGIFYLPLPLSDPLLRQTHHFDDSKVLTPQVRSSLMQTLST 112 Query: 76 --------TSSA--IISISSASHQYIDK------HNIHKATLDAIYHAVENL---QVIPR 116 A ++S S + +N++ +DA ++ + V + Sbjct: 113 AGSDLHQSCGWATTLLSAGDISAGMMRPSNAGGSYNLNAQAMDATVQLIQGIYDRGVNIQ 172 Query: 117 SALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHK- 166 +D P + + K DS+ ++AAS+ AKVTRD + + K Sbjct: 173 EIYVDTIGQPAAYQKKLERIFPTAKITVAKKADSLYPCVSAASVCAKVTRDAALEVLWKT 232 Query: 167 --KYPD-----------YGFDSHVGYPTAKH-QQVIK-------EKGPSCIHRLTFRPLR 205 + P + GYP+ + ++ GP C R ++ + Sbjct: 233 RGRPPAREEEKDKNEEDTDMEWGSGYPSDQRCVTWLRGNMHPVFGWGPEC--RFSWGTAK 290 Query: 206 NL 207 ++ Sbjct: 291 DM 292 >gi|312210372|emb|CBX90459.1| similar to ribonuclease hi large subunit [Leptosphaeria maculans] Length = 357 Score = 88.2 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 77/249 (30%), Gaps = 69/249 (27%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF------GINDSKKISHKKREEL------- 71 V G+DE GRG + GP+V A L + NDSK ++ R L Sbjct: 59 VVLGVDEAGRGPVLGPMVYALFYLPLSLHHSLLADTHHFNDSKVLTADFRTSLMRTLCTP 118 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHA----------VENLQVIPRSALID 121 + ++A + S S Q I H + + + A V V ID Sbjct: 119 STDLHAAAGWATRSLSAQDISAHMLSPSVYNLNAQAMDATIDLIKGVLEKGVNVTDIYID 178 Query: 122 GRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 PE + + K DS+ ++AAS+ AKVTRD Y Y Sbjct: 179 TIGKPEIYQKKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRD---AALEVGYGKYH 235 Query: 173 FDS----------------------------HVGYPTAKHQQVIKEKGPSCIH------R 198 GYP+ Q ++ + R Sbjct: 236 DHDHSHSQSSSTDVLNAQTQTQDPVKATVSWGSGYPSDPRTQAWLKQNMDPVFGWGTECR 295 Query: 199 LTFRPLRNL 207 ++ + L Sbjct: 296 HSWGTAKEL 304 >gi|302800969|ref|XP_002982241.1| hypothetical protein SELMODRAFT_233940 [Selaginella moellendorffii] gi|300149833|gb|EFJ16486.1| hypothetical protein SELMODRAFT_233940 [Selaginella moellendorffii] Length = 261 Score = 88.2 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 69/205 (33%), Gaps = 31/205 (15%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF-------GINDSKKISHKKREELYEKITSSA 79 GIDE GRG + GP+V G+ K R+ E Sbjct: 12 MGIDEAGRGPVLGPMVYGCAYCAVAYKEELASLKFAGMRFQDIDRGKTRKAFREL----- 66 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR--------SIPEDLPC 131 ++I + + V + V+ +D + E P Sbjct: 67 --EGGPIDGVKRSLNDISYDSAIGLIKLVLSRGVLLSEVYVDTVGDAEKYQARLSELFPH 124 Query: 132 QAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--VGYP-TAKHQQV 187 F V K DS+ ++AASI AKVTRD+ ++ + GYP + + Sbjct: 125 IKFTVAKKADSLFPIVSAASIAAKVTRDQALKSWVMDEAGCAISRNFGSGYPGDPETKAW 184 Query: 188 IKEK-----GPSCIHRLTFRPLRNL 207 +++ G + R ++ + L Sbjct: 185 LEQHMDDVFGFPSLVRFSWATCKPL 209 >gi|302765497|ref|XP_002966169.1| hypothetical protein SELMODRAFT_439531 [Selaginella moellendorffii] gi|300165589|gb|EFJ32196.1| hypothetical protein SELMODRAFT_439531 [Selaginella moellendorffii] Length = 361 Score = 87.8 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 42/202 (20%), Positives = 70/202 (34%), Gaps = 30/202 (14%) Query: 27 AGIDEVGRGALAGPVV----VAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 GIDE GRG + GP+V A+ D + K R+ E Sbjct: 1 MGIDEAGRGPVLGPMVYGCAYCAVAYKEELASLKFADIDR--GKTRKAFREL-------E 51 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR--------SIPEDLPCQAF 134 ++I + + V + V+ +D + E P F Sbjct: 52 GGPIDGVKRSLNDISYDSAIGLIKLVLSRGVLLSEVYVDTVGDAEKYQARLSELFPHIKF 111 Query: 135 AVI-KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--VGYP-TAKHQQVIKE 190 V K DS+ ++AASI AKVTRD+ ++ + GYP + +++ Sbjct: 112 TVAKKADSLFPIVSAASIAAKVTRDQALKSWVMDEAGCTISRNFGSGYPGDPDTKAWLEQ 171 Query: 191 K-----GPSCIHRLTFRPLRNL 207 G + R ++ + L Sbjct: 172 HMDDVFGFPSLVRFSWATCKPL 193 >gi|289613504|emb|CBI59529.1| unnamed protein product [Sordaria macrospora] Length = 397 Score = 87.8 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 65/174 (37%), Gaps = 35/174 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGIN------DSKKISHKKREELYEKITSS--- 78 G+DE GRG + GP+V +A L + DSK ++ R L +++ + Sbjct: 55 GVDEAGRGPVLGPMVYSAFYLPLTLSDPLLKQKHSFDDSKVLTPAVRLSLMKELCTKETE 114 Query: 79 --------------AIISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALID 121 IS +N+++ +DA ++ + V ID Sbjct: 115 LHDNCGYATSSLSPLSISSGMLKASKSQIYNLNQQAMDATIELIKGIYKRGVNVTDIFID 174 Query: 122 GRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHK 166 P + V K DS+ ++AAS++AKVTRD + + Sbjct: 175 TIGQPAAYQKKLERVFPTAKITVAKKADSLYPVVSAASVVAKVTRDIALEVLWA 228 >gi|39939117|ref|NP_950883.1| ribonuclease HII family 2 [Onion yellows phytoplasma OY-M] gi|39722226|dbj|BAD04716.1| ribonuclease HII Family 2 [Onion yellows phytoplasma OY-M] Length = 330 Score = 87.8 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 67/170 (39%), Gaps = 25/170 (14%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-----INDSKKISHKKREELYEKITS 77 P G DEVG G + GPV+V + L NI F I +SKKIS +K +L I Sbjct: 116 YLPSIGSDEVGTGDVFGPVIVCCVYLTAKNIVFLQKLGTIAESKKISDEKIMQLAPLIMK 175 Query: 78 SAIISISSASHQY----IDKHNIHKATLDAIYHAVEN--LQVIPRS-ALIDGRSIPEDLP 130 I S+ I + N++K A++ L+ P ++D P++ Sbjct: 176 EVIYSVKIMMPLEYNQTIKQCNLNKIKALMHNEAIKQTVLKASPNVPVILDQFCFPKNYF 235 Query: 131 C-------------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + K DS S+A AS+IA+ + K+ Sbjct: 236 NYLQDQKAQNEIYTKIIFETKADSSYFSVAVASVIARYLFLTQIAKLSKQ 285 >gi|260584114|ref|ZP_05851862.1| ribonuclease HIII [Granulicatella elegans ATCC 700633] gi|260158740|gb|EEW93808.1| ribonuclease HIII [Granulicatella elegans ATCC 700633] Length = 304 Score = 87.0 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 27/179 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79 W V G DEVG G+ GP+ VA + N I G+ DSK ++ + +E+ KI Sbjct: 89 WGVIGSDEVGTGSYFGPLTVACAFVPENLIKELQILGVKDSKILTDSQIQEIVPKIKELV 148 Query: 80 IISISSASHQYIDK----HNIHKATLDAIYHAVENLQVIP-----RSALIDGRSIPEDL- 129 + + + ++ N+++ A++ L ++ LID P + Sbjct: 149 PYKLLTLWPEKYNEVQQTKNLNEMKALLHNQAIKRLYQQINADLLQAVLIDEFCSPSNYY 208 Query: 130 --------PCQAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 P +A KG+S +++AAAS+IA RD + +YG+ G Sbjct: 209 RYLGDQSAPLKAITYFKTKGESHHIAVAAASMIA---RDAFLEGLKTLSKEYGYPLLSG 264 >gi|256847956|ref|ZP_05553400.1| ribonuclease HIII [Lactobacillus coleohominis 101-4-CHN] gi|256715016|gb|EEU29993.1| ribonuclease HIII [Lactobacillus coleohominis 101-4-CHN] Length = 306 Score = 86.7 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 24/166 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G+ GP+ AA+ +D +++ G+ DSKK+S ++ ++I + Sbjct: 94 VLGSDEVGTGSYFGPLTTAAVFVDQDHLASLRKLGVEDSKKLSDPTIIKIAKQIMAQCPY 153 Query: 82 SISSASHQYIDKHNI--HKATLDAIYHAV-------ENLQVIPRSALIDGRSIP------ 126 + + Q ++ ++A L AI H + V P + LID P Sbjct: 154 HVVNVKPQDYNRLIRKYNQAQLKAICHNFVLGKVLNQIAPVQPAAILIDQFVQPSTYFRY 213 Query: 127 -----EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + F KG+S L++AAASI+A+ + M + Sbjct: 214 VRDQSPIIDKHVFFKEKGESYHLAVAAASIVARYISLQTMDDLSAR 259 >gi|257870169|ref|ZP_05649822.1| ribonuclease HIII [Enterococcus gallinarum EG2] gi|257804333|gb|EEV33155.1| ribonuclease HIII [Enterococcus gallinarum EG2] Length = 311 Score = 86.3 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 69/183 (37%), Gaps = 27/183 (14%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 W V G DEVG G+ GP+VV A+ + +P G+ DSK ++ + + KI Sbjct: 93 WSVVGSDEVGNGSYFGPLVVCAVYASKDQLPALKALGVKDSKMLTDPQIRAMAPKIKKLV 152 Query: 80 IISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED-- 128 + + ++ T+ A+ L P + LID + ++ Sbjct: 153 PYQLLTVEPTKYNEIQPKYNTVRMKVALHNQAIRLLLQKIAPKTPDAILIDQFTSEKNYR 212 Query: 129 ---------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 + + F KG+ L++AAASI+ + + K + G G Sbjct: 213 TYLKSEKNQITEKLFFATKGEQYHLAVAAASILCRTV---FLEELEKASQEVGLQLPSGA 269 Query: 180 PTA 182 + Sbjct: 270 GSK 272 >gi|145636491|ref|ZP_01792159.1| ribonuclease HII [Haemophilus influenzae PittHH] gi|145270316|gb|EDK10251.1| ribonuclease HII [Haemophilus influenzae PittHH] Length = 57 Score = 85.5 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 28/48 (58%), Positives = 35/48 (72%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR Sbjct: 6 QGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKR 53 >gi|164422805|ref|XP_963372.2| hypothetical protein NCU09608 [Neurospora crassa OR74A] gi|157069829|gb|EAA34136.2| hypothetical protein NCU09608 [Neurospora crassa OR74A] Length = 381 Score = 85.5 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 67/185 (36%), Gaps = 35/185 (18%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN------DSKKISHKKREE 70 + N G+DE GRG + GP+V +A L + DSK ++ R Sbjct: 36 QLLADNTPCCLGVDEAGRGPVLGPMVYSAFYLPLTLSDPLLKQKHSFDDSKVLTPAVRLS 95 Query: 71 LYEKITSS-----------------AIISISSASHQYIDKHNIHKATLDAIYHAVENL-- 111 L +++ + IS +N+++ +DA ++ + Sbjct: 96 LMKELCTKDTELHDNCGYATSSLSPLSISSGMLKASKAQIYNLNQQAMDATIALIKGIYE 155 Query: 112 -QVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLM 161 V ID P + V K DS+ ++AAS++AKVTRD + Sbjct: 156 RGVNVTDIFIDTIGQPAAYQKKLERVFPTAKITVAKKADSLYPVVSAASVVAKVTRDIAL 215 Query: 162 RIAHK 166 + Sbjct: 216 EVLWA 220 >gi|85057383|ref|YP_456299.1| ribonuclease HIII [Aster yellows witches'-broom phytoplasma AYWB] gi|84789488|gb|ABC65220.1| ribonuclease HIII [Aster yellows witches'-broom phytoplasma AYWB] Length = 330 Score = 85.1 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 63/170 (37%), Gaps = 25/170 (14%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHKKREELYEKITS 77 P G DEVG G + GPVVV + L NI F I +SKKIS +K + I Sbjct: 116 YLPSIGSDEVGTGDVFGPVVVCCVYLTAKNIAFLQNLGIIAESKKISDEKIINIAPLIMK 175 Query: 78 SAIISISSASHQY----IDKHNIHKATLDAIYHAVEN--LQVIPRS-ALIDGRSIPEDLP 130 I S I + N++K A++ + P ++D P++ Sbjct: 176 EVIYSSKIMMPLEYNQIIKQCNLNKIKALMHNEAIKQTVFKAPPNVPVILDQFCFPKNYF 235 Query: 131 C-------------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 K DS S+A AS+IA+ + K+ Sbjct: 236 NYLQDQKDQNEVYTNIIFETKADSSYFSVAVASVIARYLFLTQIAKLSKQ 285 >gi|228993279|ref|ZP_04153195.1| Ribonuclease HIII [Bacillus pseudomycoides DSM 12442] gi|228766347|gb|EEM14990.1| Ribonuclease HIII [Bacillus pseudomycoides DSM 12442] Length = 333 Score = 85.1 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 58/221 (26%), Positives = 93/221 (42%), Gaps = 37/221 (16%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 +AG DEVG G GP+ V A+ +D IP G+ DSK ++ + E+ +++ S Sbjct: 114 GTMSIAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLS 173 Query: 78 SAIIS---ISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSIPE 127 S + + + + + ++ L A+ H A+ NL P LID + P+ Sbjct: 174 VVPYSSLVLHNEKYNELFEKGNNQGKLKALLHNKALTNLLKKIAPTKPEGILIDQFTQPD 233 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172 + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 234 TYYKYLTKQKEVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 292 Query: 173 FDSHVGYPTAKHQQVI-KEKGPSC--IH----RLTFRPLRN 206 V AK Q + KE P +H FR L+ Sbjct: 293 AGKQVDIAAAKLIQKLGKEHLPEFVKLHFANTEKAFRLLKK 333 >gi|283769498|ref|ZP_06342394.1| ribonuclease HIII [Bulleidia extructa W1219] gi|283103766|gb|EFC05152.1| ribonuclease HIII [Bulleidia extructa W1219] Length = 281 Score = 84.7 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 74/195 (37%), Gaps = 33/195 (16%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKK 62 P +P ++L +P AG DEVG G GPVVV A + N + GI DSK Sbjct: 62 PNQPSYKL---------YPQAGSDEVGTGDYFGPVVVCASYVCENQLDLLRSYGITDSKA 112 Query: 63 ISHKKREELYEKITSSAIISISSASHQYID----KHNIHKATLDAIYHAVENLQVI---P 115 +S K ++ + + + I S S + + ++N++ A L P Sbjct: 113 MSDKDIQKAAKSLQNQFTHVIFSLSPKAYNDLHRRYNMNATKALLHNQAYLALSKRVDLP 172 Query: 116 RSALIDGRS----------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165 ++D + ++ + K +S S+A AS+ A R+R + Sbjct: 173 EICMVDQFTAEKNYFSYLAYEPEIFHRLQFETKAESRYASVALASVFA---RNRFLEEWS 229 Query: 166 KKYPDYGFDSHVGYP 180 Y F G Sbjct: 230 YMEEKYNFHFQKGAG 244 >gi|114675613|ref|XP_001169836.1| PREDICTED: similar to Ribonuclease H2, large subunit isoform 1 [Pan troglodytes] Length = 255 Score = 84.7 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 72/196 (36%), Gaps = 33/196 (16%) Query: 41 VVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAIISIS--SASHQYID-- 92 +V A + + DSK + +RE L+ K+ + + + S I Sbjct: 1 MVYAICYCPLSRLADLEALKVADSKTLLESERERLFAKMEDTDFVGWALDVLSPNLISTS 60 Query: 93 -----KHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDL---------PCQAFA 135 K+N++ + D ++ V +D +PE + Sbjct: 61 MLGRVKYNLNSLSHDTATGLIQYALYQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTV 120 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHVGYPT-AKHQQVIKEK- 191 K D++ ++AASI AKV RD+ ++ +K D D GYP K + +KE Sbjct: 121 KAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDSDTDYGSGYPNDPKTKAWLKEHV 180 Query: 192 ----GPSCIHRLTFRP 203 G R ++R Sbjct: 181 EPVFGFPQFVRFSWRT 196 >gi|326693332|ref|ZP_08230337.1| ribonuclease HIII [Leuconostoc argentinum KCTC 3773] Length = 313 Score = 84.3 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 26/170 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 W V G DEVG GA GP+ AA+ + + + GI DSK ++ K ++ +I ++ Sbjct: 98 WSVLGSDEVGAGAYFGPLTTAAVYVPKDQLAWVRQLGIADSKTLTDAKMRQIAPEIIANL 157 Query: 80 IISISSASHQYIDKHNI--HKATLDAIYHAVENLQVI-------PRSALIDGRS-----I 125 + + + ++ + + AI H +V+ P + LID + Sbjct: 158 PHHVVNLMPEKYNQMQPTNNVNQMKAISHNFVLGKVLAKIAPTTPDAILIDQFAQASTYF 217 Query: 126 PEDLPCQAFAVI--------KGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 Q +I KG+ LS+AAASI+A+V M ++ Sbjct: 218 KYLTQAQQSPIIKNNVHFTTKGEQYHLSVAAASILARVVELDSMAKLSEE 267 >gi|196034532|ref|ZP_03101941.1| ribonuclease HIII [Bacillus cereus W] gi|228929603|ref|ZP_04092621.1| Ribonuclease HIII [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229124121|ref|ZP_04253313.1| Ribonuclease HIII [Bacillus cereus 95/8201] gi|195993074|gb|EDX57033.1| ribonuclease HIII [Bacillus cereus W] gi|228659423|gb|EEL15071.1| Ribonuclease HIII [Bacillus cereus 95/8201] gi|228829990|gb|EEM75609.1| Ribonuclease HIII [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 337 Score = 83.6 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 87/224 (38%), Gaps = 38/224 (16%) Query: 4 NSIPERPHFELEAMVREKNMWP--------VAGIDEVGRGALAGPVVVAAIILDPNNIP- 54 ++P+ P ++ V P + G DEVG G GP+ V A+ +D IP Sbjct: 93 QTVPQTPKIAVKKSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPL 152 Query: 55 ---FGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKH-----NIHKATLDAIYH 106 G+ DSK ++ ++ + +++ S ++ ++ N K Sbjct: 153 LKELGVKDSKNLNDEQITAIAKQLLHVVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNK 212 Query: 107 AVENL-----QVIPRSALIDGRSIPEDL-----------PCQAFAVIKGDSISLSIAAAS 150 A+ NL P LID + P+ + KG+S+ L++AAAS Sbjct: 213 AITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENVYFATKGESVHLAVAAAS 272 Query: 151 IIAKVT----RDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 I+A+ + D L + A P G V AK Q + + Sbjct: 273 ILARYSFVKQFDELSKKAGMPLPK-GAGKQVDIAAAKLIQKLGK 315 >gi|294155370|ref|YP_003559754.1| ribonuclease HII [Mycoplasma crocodyli MP145] gi|291599873|gb|ADE19369.1| ribonuclease HII [Mycoplasma crocodyli MP145] Length = 246 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 92/227 (40%), Gaps = 41/227 (18%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----G 56 +F + E E+++ K + G+DE G G GP++ AA+++ I + G Sbjct: 6 LFDTNKKEETIIEIDSSFSFKE-KRIIGVDETGVGDYFGPLISAAVLVSDKQIEYLKSIG 64 Query: 57 INDSKKISHKKR-EELYEKITSSAIISISSASHQYIDK-----HNIHKATLDAIYHAVEN 110 + DSKKI+ R +L +I S + + + S+ ++ N +K H + + Sbjct: 65 VKDSKKITSDSRIIDLANQIKSKCLYKVYTLSNAGYNRVEQTYRNSNKLKFFTHAHVINS 124 Query: 111 LQVI-------PRSALIDGRSIP-------------------EDLPCQAFAVIKGDSISL 144 L+ + ID + + K +SI + Sbjct: 125 LEELLESRGSEYDYVFIDQYTTKNAFIEYFNNMIYINNWSSIKVFKKPILLSHKAESIHI 184 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 S+AAASI+A R L+ K Y FD +G + + ++++++ Sbjct: 185 SVAAASILA---RAELLENMKKMKAKYNFDFKLG-ASKQVKELVQKF 227 >gi|302308334|ref|NP_985219.2| AER363Wp [Ashbya gossypii ATCC 10895] gi|299789405|gb|AAS53043.2| AER363Wp [Ashbya gossypii ATCC 10895] Length = 304 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 52/225 (23%), Positives = 81/225 (36%), Gaps = 41/225 (18%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-----FGINDSKKISHKKREELYEKI 75 + + G+DE GRG + GP+V A + G +DSKK++ R L+ KI Sbjct: 32 EGDAVILGVDEAGRGPVLGPMVYAVAYCTVSYEATIVRQHGFDDSKKLTDAVRRTLFGKI 91 Query: 76 TSSAIISISSA----SHQYIDKHNIH-------------KATLDAIYHAVENLQVIPRSA 118 ++ + I A S I + T A+ V + V Sbjct: 92 CAAELAGIGFATTGLSPAAISSGMLRYPPTKNYNLNEQAHDTTIALIQGVLDAGVRVEHV 151 Query: 119 LIDGRSIPEDLP---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 +D P C+ K DS ++ AS++AKVTRD H P Sbjct: 152 YVDTVGPPLAYQAKLQQRFPACKITVAKKADSTFPVVSVASVVAKVTRD---VWLHALRP 208 Query: 170 DYGFDSHVGYPTAK------HQQVIKEKGPSC-IHRLTFRPLRNL 207 GYP + H++ G S + R +++ R L Sbjct: 209 TPDDVLGSGYPGDQKTVAWLHRECRPLFGWSPELVRFSWQTCRTL 253 >gi|228999329|ref|ZP_04158909.1| Ribonuclease HIII [Bacillus mycoides Rock3-17] gi|228760526|gb|EEM09492.1| Ribonuclease HIII [Bacillus mycoides Rock3-17] Length = 338 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 57/221 (25%), Positives = 94/221 (42%), Gaps = 37/221 (16%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 +AG DEVG G GP+ V A+ +D IP G+ DSK ++ + E+ +++ + Sbjct: 119 GTMSIAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLN 178 Query: 78 SAIIS---ISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSIPE 127 S + + + + + ++ L A+ H A+ NL P LID + P+ Sbjct: 179 VVPYSSLVLHNEKYNELFEKGNNQGKLKALLHNKALTNLLKKIAPTKPEGILIDQFTQPD 238 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172 + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 239 TYYKYLTKQKEVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 297 Query: 173 FDSHVGYPTAKHQQVI-KEKGPSC--IH----RLTFRPLRN 206 V AK Q + KE+ P +H FR L+ Sbjct: 298 AGKQVDIAAAKLIQKLGKERLPEFVKLHFANTEKAFRLLKK 338 >gi|229006884|ref|ZP_04164516.1| Ribonuclease HIII [Bacillus mycoides Rock1-4] gi|228754377|gb|EEM03790.1| Ribonuclease HIII [Bacillus mycoides Rock1-4] Length = 333 Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 57/221 (25%), Positives = 94/221 (42%), Gaps = 37/221 (16%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 +AG DEVG G GP+ V A+ +D IP G+ DSK ++ + E+ +++ + Sbjct: 114 GTMSIAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLN 173 Query: 78 SAIIS---ISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSIPE 127 S + + + + + ++ L A+ H A+ NL P LID + P+ Sbjct: 174 VVPYSSLVLHNEKYNELFEKGNNQGKLKALLHNKALTNLLKKIAPTKPEGILIDQFTQPD 233 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172 + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 234 TYYKYLTKQKEVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 292 Query: 173 FDSHVGYPTAKHQQVI-KEKGPSC--IH----RLTFRPLRN 206 V AK Q + KE+ P +H FR L+ Sbjct: 293 AGKQVDIAAAKLIQKLGKERLPEFVKLHFANTEKAFRLLKK 333 >gi|293376244|ref|ZP_06622487.1| ribonuclease HIII [Turicibacter sanguinis PC909] gi|292645136|gb|EFF63203.1| ribonuclease HIII [Turicibacter sanguinis PC909] Length = 308 Score = 82.8 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 83/195 (42%), Gaps = 31/195 (15%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS----S 78 G DEVG G GP+VV ++ + I F GI DSK + + +L +I + Sbjct: 96 IGCDEVGTGDYFGPIVVCCASVEKDQIAFLQEMGIKDSKALKDPEICQLAHQIETMIPHQ 155 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVE------NLQVIPRSALIDGR--------- 123 ++ + + ++K ++ ++ A H +L +P ++D Sbjct: 156 CLVLPNEKYNLMVEK-GMNANSIKAYLHNQALLKLTTSLPSLPDFIIMDEFVNEAKYYDY 214 Query: 124 -----SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 P + + KG+S+ +++AAASI+A+ + + M+I KKY + G Sbjct: 215 LKKLPKQPTIISENLHFIQKGESVHVAVAAASILARASFVKYMQIMSKKY-QFELPKGAG 273 Query: 179 YPTA-KHQQVIKEKG 192 P ++ +K G Sbjct: 274 APVDIAGRKFVKLHG 288 >gi|229087103|ref|ZP_04219253.1| Ribonuclease HIII [Bacillus cereus Rock3-44] gi|228696171|gb|EEL49006.1| Ribonuclease HIII [Bacillus cereus Rock3-44] Length = 338 Score = 82.4 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 51/198 (25%), Positives = 84/198 (42%), Gaps = 30/198 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 +AG DEVG G GP+ V A+ +D IP G+ DSK ++ + E+ +++ + Sbjct: 119 GTMSIAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDVQIAEIAKQLLN 178 Query: 78 ----SAIISISSASHQYIDKHNIH-KATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S+++ + ++ DK N K A+ NL P LID + P+ Sbjct: 179 VVPYSSLVLHNEKYNEMFDKGNNQGKLKALLHNKALTNLLKKIAPTKPEGILIDQFTQPD 238 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172 + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 239 TYYKYLAKQKEVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 297 Query: 173 FDSHVGYPTAKHQQVIKE 190 V AK Q + + Sbjct: 298 AGKQVDIAAAKLIQKLGK 315 >gi|65321922|ref|ZP_00394881.1| COG1039: Ribonuclease HIII [Bacillus anthracis str. A2012] Length = 337 Score = 82.4 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 33/197 (16%) Query: 4 NSIPERPHFELEAMVREKNMWP--------VAGIDEVGRGALAGPVVVAAIILDPNNIP- 54 ++P+ P ++ V P + G DEVG G GP+ V A+ +D IP Sbjct: 93 QTVPQTPKIAVKKSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPL 152 Query: 55 ---FGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKH-----NIHKATLDAIYH 106 G+ DSK ++ ++ + +++ S ++ ++ N K Sbjct: 153 LKELGVKDSKNLNDEQITAIAKQLLHVVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNK 212 Query: 107 AVENL-----QVIPRSALIDGRSIPEDL-----------PCQAFAVIKGDSISLSIAAAS 150 A+ NL P LID + P+ + KG+S+ L++AAAS Sbjct: 213 AITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENVYFATKGESVHLAVAAAS 272 Query: 151 IIAKVTRDRLMRIAHKK 167 I+A+ + + KK Sbjct: 273 ILARYSFVKQFNELSKK 289 >gi|195867864|ref|ZP_03079863.1| ribonuclease HII [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|195660441|gb|EDX53699.1| ribonuclease HII [Ureaplasma urealyticum serovar 9 str. ATCC 33175] Length = 317 Score = 82.0 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 25/177 (14%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREE 70 E + +N + G DEVG G L G +VV A+ L +++ I DSKK+S + +E Sbjct: 94 EREIY-QNNQIIIGSDEVGVGDLFGGIVVCAVSLKQSDLKFLAHLNIVDSKKLSDHQMQE 152 Query: 71 LYEKITSSAIISISSASHQYIDKH-----NIHKATLDAIYHAVENLQVIPR----SALID 121 +YEKI + ++ S + + ++ N H Y AV++ V + +++D Sbjct: 153 IYEKIKNQISYTVLSYNPKEYNELINQYNNAHVLKTILHYKAVQSEIVKHQNYSIFSVVD 212 Query: 122 GRSIPEDLPC-----------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 S ++ + K +S S+A ASIIA+V +++ I ++ Sbjct: 213 AFSSLKNWNQYLQKAHLKPYEPNLLIPKAESSYTSVALASIIARVMFLKMIAIIEQE 269 >gi|171920922|ref|ZP_02932071.1| ribonuclease HII [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178980|ref|ZP_02964735.1| ribonuclease HII [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188023994|ref|ZP_02996755.1| ribonuclease HII [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518241|ref|ZP_03003771.1| ribonuclease HII [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524398|ref|ZP_03004424.1| ribonuclease HII [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198273849|ref|ZP_03206383.1| ribonuclease HII [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554110|ref|YP_002284833.1| ribonuclease HIII [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550434|ref|ZP_03771383.1| ribonuclease HII [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551445|ref|ZP_03772391.1| ribonuclease HII [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903150|gb|EDT49439.1| ribonuclease HII [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209262|gb|EDU06305.1| ribonuclease HII [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019019|gb|EDU57059.1| ribonuclease HII [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998110|gb|EDU67207.1| ribonuclease HII [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659944|gb|EDX53324.1| ribonuclease HII [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198249604|gb|EDY74386.1| ribonuclease HII [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541611|gb|ACI59840.1| ribonuclease HIII [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379260|gb|EEH01625.1| ribonuclease HII [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379588|gb|EEH01950.1| ribonuclease HII [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 317 Score = 82.0 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 25/177 (14%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREE 70 E + +N + G DEVG G L G +VV A+ L +++ I DSKK+S + +E Sbjct: 94 EREIY-QNNQIIIGSDEVGVGDLFGGIVVCAVSLKQSDLKFLAHLNIVDSKKLSDHQMQE 152 Query: 71 LYEKITSSAIISISSASHQYIDKH-----NIHKATLDAIYHAVENLQVIPR----SALID 121 +YEKI + ++ S + + ++ N H Y AV++ V + +++D Sbjct: 153 IYEKIKNQISYTVLSYNPKEYNELINQYNNAHVLKTILHYKAVQSEIVKHQNYSIFSVVD 212 Query: 122 GRSIPEDLPC-----------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 S ++ + K +S S+A ASIIA+V +++ I ++ Sbjct: 213 AFSSLKNWNQYLQKAHLKPYEPNLLIPKAESSYTSVALASIIARVMFLKMIAIIEQE 269 >gi|167635636|ref|ZP_02393948.1| ribonuclease HIII [Bacillus anthracis str. A0442] gi|170688262|ref|ZP_02879472.1| ribonuclease HIII [Bacillus anthracis str. A0465] gi|167529056|gb|EDR91811.1| ribonuclease HIII [Bacillus anthracis str. A0442] gi|170667768|gb|EDT18521.1| ribonuclease HIII [Bacillus anthracis str. A0465] Length = 332 Score = 82.0 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 33/197 (16%) Query: 4 NSIPERPHFELEAMVREKNMWP--------VAGIDEVGRGALAGPVVVAAIILDPNNIP- 54 ++P+ P ++ V P + G DEVG G GP+ V A+ +D IP Sbjct: 88 QTVPQTPKIAVKKSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPL 147 Query: 55 ---FGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKH-----NIHKATLDAIYH 106 G+ DSK ++ ++ + +++ S ++ ++ N K Sbjct: 148 LKELGVKDSKNLNDEQITAIAKQLLHVVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNK 207 Query: 107 AVENL-----QVIPRSALIDGRSIPEDL-----------PCQAFAVIKGDSISLSIAAAS 150 A+ NL P LID + P+ + KG+S+ L++AAAS Sbjct: 208 AITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENVYFATKGESVHLAVAAAS 267 Query: 151 IIAKVTRDRLMRIAHKK 167 I+A+ + + KK Sbjct: 268 ILARYSFVKQFNELSKK 284 >gi|30264624|ref|NP_847001.1| ribonuclease HIII [Bacillus anthracis str. Ames] gi|47530095|ref|YP_021444.1| ribonuclease HIII [Bacillus anthracis str. 'Ames Ancestor'] gi|49187446|ref|YP_030698.1| ribonuclease HIII [Bacillus anthracis str. Sterne] gi|165871447|ref|ZP_02216094.1| ribonuclease HIII [Bacillus anthracis str. A0488] gi|167641557|ref|ZP_02399804.1| ribonuclease HIII [Bacillus anthracis str. A0193] gi|170708703|ref|ZP_02899141.1| ribonuclease HIII [Bacillus anthracis str. A0389] gi|177653122|ref|ZP_02935409.1| ribonuclease HIII [Bacillus anthracis str. A0174] gi|190566898|ref|ZP_03019814.1| ribonuclease HIII [Bacillus anthracis Tsiankovskii-I] gi|227817338|ref|YP_002817347.1| ribonuclease HIII [Bacillus anthracis str. CDC 684] gi|229601632|ref|YP_002868834.1| ribonuclease HIII [Bacillus anthracis str. A0248] gi|254686953|ref|ZP_05150811.1| ribonuclease HIII [Bacillus anthracis str. CNEVA-9066] gi|254724517|ref|ZP_05186300.1| ribonuclease HIII [Bacillus anthracis str. A1055] gi|254736662|ref|ZP_05194368.1| ribonuclease HIII [Bacillus anthracis str. Western North America USA6153] gi|254741700|ref|ZP_05199387.1| ribonuclease HIII [Bacillus anthracis str. Kruger B] gi|254754703|ref|ZP_05206738.1| ribonuclease HIII [Bacillus anthracis str. Vollum] gi|254757535|ref|ZP_05209562.1| ribonuclease HIII [Bacillus anthracis str. Australia 94] gi|73917840|sp|Q81L36|RNH3_BACAN RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|254808009|sp|C3PAE4|RNH3_BACAA RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|254808010|sp|C3L8T2|RNH3_BACAC RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|30259282|gb|AAP28487.1| ribonuclease HIII [Bacillus anthracis str. Ames] gi|47505243|gb|AAT33919.1| ribonuclease HIII [Bacillus anthracis str. 'Ames Ancestor'] gi|49181373|gb|AAT56749.1| ribonuclease HIII [Bacillus anthracis str. Sterne] gi|164712744|gb|EDR18274.1| ribonuclease HIII [Bacillus anthracis str. A0488] gi|167510442|gb|EDR85841.1| ribonuclease HIII [Bacillus anthracis str. A0193] gi|170126383|gb|EDS95272.1| ribonuclease HIII [Bacillus anthracis str. A0389] gi|172081646|gb|EDT66717.1| ribonuclease HIII [Bacillus anthracis str. A0174] gi|190561889|gb|EDV15858.1| ribonuclease HIII [Bacillus anthracis Tsiankovskii-I] gi|227005114|gb|ACP14857.1| ribonuclease HIII [Bacillus anthracis str. CDC 684] gi|229266040|gb|ACQ47677.1| ribonuclease HIII [Bacillus anthracis str. A0248] Length = 311 Score = 82.0 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 33/197 (16%) Query: 4 NSIPERPHFELEAMVREKNMWP--------VAGIDEVGRGALAGPVVVAAIILDPNNIP- 54 ++P+ P ++ V P + G DEVG G GP+ V A+ +D IP Sbjct: 67 QTVPQTPKIAVKKSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPL 126 Query: 55 ---FGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKH-----NIHKATLDAIYH 106 G+ DSK ++ ++ + +++ S ++ ++ N K Sbjct: 127 LKELGVKDSKNLNDEQITAIAKQLLHVVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNK 186 Query: 107 AVENL-----QVIPRSALIDGRSIPEDL-----------PCQAFAVIKGDSISLSIAAAS 150 A+ NL P LID + P+ + KG+S+ L++AAAS Sbjct: 187 AITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENVYFATKGESVHLAVAAAS 246 Query: 151 IIAKVTRDRLMRIAHKK 167 I+A+ + + KK Sbjct: 247 ILARYSFVKQFNELSKK 263 >gi|229135388|ref|ZP_04264177.1| Ribonuclease HIII [Bacillus cereus BDRD-ST196] gi|228648084|gb|EEL04130.1| Ribonuclease HIII [Bacillus cereus BDRD-ST196] Length = 311 Score = 81.6 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 30/194 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + E+ +++ Sbjct: 93 GTMSILGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLH 152 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLTKIAPTKPEGILIDQFTQPD 212 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172 + KG+S+ L++AAASI+A+ + D L + A + P G Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMQLPK-G 271 Query: 173 FDSHVGYPTAKHQQ 186 V AK Q Sbjct: 272 AGKQVDIAAAKLIQ 285 >gi|163942287|ref|YP_001647171.1| ribonuclease HIII [Bacillus weihenstephanensis KBAB4] gi|226741380|sp|A9VJL6|RNH3_BACWK RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|163864484|gb|ABY45543.1| ribonuclease HIII [Bacillus weihenstephanensis KBAB4] Length = 312 Score = 81.3 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 30/194 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + E+ +++ Sbjct: 93 GTMSILGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLH 152 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTKPEGILIDQFTQPD 212 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172 + KG+S+ L++AAASI+A+ + D L + A + P G Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMQLPK-G 271 Query: 173 FDSHVGYPTAKHQQ 186 V AK Q Sbjct: 272 AGKQVDIAAAKLIQ 285 >gi|311069353|ref|YP_003974276.1| ribonuclease HIII [Bacillus atrophaeus 1942] gi|310869870|gb|ADP33345.1| ribonuclease HIII [Bacillus atrophaeus 1942] Length = 313 Score = 81.3 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 55/212 (25%), Positives = 89/212 (41%), Gaps = 34/212 (16%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 M V G DEVG G GP+ VA +D + + G+ DSK + + E+ + + Sbjct: 93 GMMSVIGSDEVGTGDYFGPMTVACAYVDKSKLALMKELGVKDSKHLKDPQIIEIAKSLIK 152 Query: 78 SAIISISSASHQYIDKHNIHKATL-----DAIYHAVENL-----QVIPRSALIDGRSIP- 126 + S+ +++ +K + A+ +L + P + LID + P Sbjct: 153 TIPYSLLILNNEKYNKLQEKGMSQGKMKALLHNQAIGHLLKKMDGIKPEAILIDQFAEPS 212 Query: 127 ---------EDLPCQAFAVIKGDSISLSIAAASIIAKVTR----DRLMRIAHKKYPDYGF 173 + + + + K + I LS+AAASIIA+ + D+L R A P G Sbjct: 213 IYFKHLAGKDIVKERTYFSTKAEGIHLSVAAASIIARYSFLMEMDKLSREAGMVIPK-GA 271 Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 HV AK +I +KG S + TF L Sbjct: 272 GPHVDEACAK---LILKKGESAL--RTFTKLH 298 >gi|229140480|ref|ZP_04269035.1| Ribonuclease HII [Bacillus cereus BDRD-ST26] gi|228643041|gb|EEK99317.1| Ribonuclease HII [Bacillus cereus BDRD-ST26] Length = 106 Score = 81.3 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 23/45 (51%), Positives = 31/45 (68%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN 58 E +REK + +AGIDEVGRG LAGPVV AA++L + + G+ Sbjct: 62 YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPKDFLYSGVK 106 >gi|259047147|ref|ZP_05737548.1| ribonuclease HIII [Granulicatella adiacens ATCC 49175] gi|259036197|gb|EEW37452.1| ribonuclease HIII [Granulicatella adiacens ATCC 49175] Length = 270 Score = 80.9 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 25/179 (13%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA 79 W V G DEVG GA GP+ VA+ + NIP G+ DSK ++ ++ KI Sbjct: 56 WSVMGSDEVGNGAYFGPLTVASAYVSKENIPLLKKMGVKDSKDLTDEQIRAFVPKIKEVI 115 Query: 80 IISISSASHQYIDK----HNIHKATLDAIYHAVENLQVI-----PRSALIDGRSIPEDL- 129 + + + ++ N+++ A+ L P LID PE Sbjct: 116 PYKLLTLWPEKYNEVQQVKNLNEMKALLHNQALRLLSEKIMPESPEGFLIDQFCKPELYY 175 Query: 130 ----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + + + KG+S +++AAAS+IA+ + ++ Y S G Sbjct: 176 RYLKGQPLVDKNKTYFITKGESHHIAVAAASMIARCAFLDGLDSLSTEF-GYKLPSGAG 233 >gi|325845139|ref|ZP_08168448.1| ribonuclease HIII [Turicibacter sp. HGF1] gi|325488804|gb|EGC91204.1| ribonuclease HIII [Turicibacter sp. HGF1] Length = 308 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 92/219 (42%), Gaps = 32/219 (14%) Query: 4 NSIPERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GIN 58 ++ P++ ++ + M G DEVG G GP+VV ++ + I F GI Sbjct: 72 STTPKKSTLNKKSTLPSNIAMLSAIGCDEVGTGDYFGPIVVCCASVEKDQIAFLQEMGIK 131 Query: 59 DSKKISHKKREELYEKITS----SAIISISSASHQYIDKHNIHKATLDAIYHAVE----- 109 DSK + + +L +I + ++ + + ++K ++ ++ A H Sbjct: 132 DSKALKDLEICQLAHQIETMIPHQCLVLPNEKYNLMVEK-GMNANSIKAYLHNQALLKLT 190 Query: 110 -NLQVIPRSALIDGR--------------SIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 +L +P ++D P + + KG+S+ +++AAASI+A+ Sbjct: 191 TSLPSLPDFIIMDEFVNEAKYYDYLKKLPKQPTIVSENLHFIQKGESVHVAVAAASILAR 250 Query: 155 VTRDRLMRIAHKKYPDYGFDSHVGYPTA-KHQQVIKEKG 192 + + M+I KKY + G P ++ +K G Sbjct: 251 ASFVKYMQIMSKKY-QFELPKGAGAPVDIAGRKFVKLHG 288 >gi|218232445|ref|YP_002369353.1| ribonuclease HIII [Bacillus cereus B4264] gi|218160402|gb|ACK60394.1| ribonuclease HIII [Bacillus cereus B4264] Length = 337 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 30/198 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 178 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 238 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172 + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 297 Query: 173 FDSHVGYPTAKHQQVIKE 190 V AK Q + + Sbjct: 298 AGKQVDIAAAKLIQKLGK 315 >gi|171920172|ref|ZP_02931561.1| ribonuclease HIII [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186701730|ref|ZP_02971421.1| ribonuclease HIII [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|171902547|gb|EDT48836.1| ribonuclease HIII [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186700997|gb|EDU19279.1| ribonuclease HIII [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 316 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 24/169 (14%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79 + G DEVG G L G +VV A+ L ++ I DSKK++ ++ +E+Y++I + Sbjct: 101 QVIIGSDEVGVGDLFGGIVVCAVSLKKSDFKKINHLKIIDSKKLNDQQMQEIYQQIKNQI 160 Query: 80 IISISSASHQY----IDKHNIHKATLDAIYHAVENLQVIPRSAL-----IDGRSIPEDLP 130 +I S + + I ++N +++ ++ + +D S ++ Sbjct: 161 SYTIVSYNPKEYNELIKEYNNAHILKTILHYKALQSEIHKHAKYSIFSVVDAFSSLKNWN 220 Query: 131 C-----------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 + K +SI S+A ASIIA+V +++ I +++ Sbjct: 221 QYLQKVNFQPYEPNLLIPKAESIYTSVALASIIARVMFLKMIAIIEEQF 269 >gi|13357958|ref|NP_078232.1| ribonuclease HII [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170761950|ref|YP_001752480.1| ribonuclease HIII [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|183508540|ref|ZP_02958062.1| ribonuclease HIII [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|11387109|sp|Q9PQ93|RNH3_UREPA RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|189043679|sp|B1AJ36|RNH3_UREP2 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|11357021|pir||C82896 ribonuclease HII UU397 [imported] - Ureaplasma urealyticum gi|6899383|gb|AAF30807.1|AE002137_6 ribonuclease HII [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827527|gb|ACA32789.1| ribonuclease HIII [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|182675978|gb|EDT87883.1| ribonuclease HIII [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 316 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 24/169 (14%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79 + G DEVG G L G +VV A+ L ++ I DSKK++ ++ +E+Y++I + Sbjct: 101 QVIIGSDEVGVGDLFGGIVVCAVSLKKSDFKKINHLKIIDSKKLNDQQMQEIYQQIKNQI 160 Query: 80 IISISSASHQY----IDKHNIHKATLDAIYHAVENLQVIPRSAL-----IDGRSIPEDLP 130 +I S + + I ++N +++ ++ + +D S ++ Sbjct: 161 SYTIVSYNPKEYNELIKEYNNAHILKTILHYKALQSEIHKHAKYSIFSVVDAFSSLKNWN 220 Query: 131 C-----------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 + K +SI S+A ASIIA+V +++ I +++ Sbjct: 221 QYLQKVNFQPYEPNLLIPKAESIYTSVALASIIARVMFLKMIAIIEEQF 269 >gi|229099014|ref|ZP_04229949.1| Ribonuclease HIII [Bacillus cereus Rock3-29] gi|228684512|gb|EEL38455.1| Ribonuclease HIII [Bacillus cereus Rock3-29] Length = 295 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 30/194 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 +AG DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 77 GTMSIAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQITAIAKQLLH 136 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 137 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTTPEGILIDQFTQPD 196 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172 + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 197 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMLLPK-G 255 Query: 173 FDSHVGYPTAKHQQ 186 V AK Q Sbjct: 256 AGKQVDIAAAKLIQ 269 >gi|228987805|ref|ZP_04147914.1| Ribonuclease HIII [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771853|gb|EEM20310.1| Ribonuclease HIII [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 337 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 30/198 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 178 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 238 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172 + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 239 TYYKYLAKQKLVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 297 Query: 173 FDSHVGYPTAKHQQVIKE 190 V AK Q + + Sbjct: 298 AGKQVDIAAAKLIQKLGK 315 >gi|42783728|ref|NP_980975.1| ribonuclease HIII [Bacillus cereus ATCC 10987] gi|73917841|sp|Q72ZI6|RNH3_BACC1 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|42739658|gb|AAS43583.1| ribonuclease HIII [Bacillus cereus ATCC 10987] Length = 311 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 30/198 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 93 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 152 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPD 212 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172 + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 271 Query: 173 FDSHVGYPTAKHQQVIKE 190 V AK Q + + Sbjct: 272 AGKQVDIAAAKLIQKLGK 289 >gi|229013757|ref|ZP_04170885.1| Ribonuclease HIII [Bacillus mycoides DSM 2048] gi|228747426|gb|EEL97301.1| Ribonuclease HIII [Bacillus mycoides DSM 2048] Length = 312 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 30/194 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + E+ +++ Sbjct: 93 GTMSILGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLH 152 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTTPEGILIDQFTQPD 212 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172 + KG+S+ L++AAASI+A+ + D L + A + P G Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKKFDELSKKAGMQLPK-G 271 Query: 173 FDSHVGYPTAKHQQ 186 V AK Q Sbjct: 272 AGKQVDIAAAKLIQ 285 >gi|257867416|ref|ZP_05647069.1| ribonuclease HIII [Enterococcus casseliflavus EC30] gi|257873746|ref|ZP_05653399.1| ribonuclease HIII [Enterococcus casseliflavus EC10] gi|257877497|ref|ZP_05657150.1| ribonuclease HIII [Enterococcus casseliflavus EC20] gi|257801472|gb|EEV30402.1| ribonuclease HIII [Enterococcus casseliflavus EC30] gi|257807910|gb|EEV36732.1| ribonuclease HIII [Enterococcus casseliflavus EC10] gi|257811663|gb|EEV40483.1| ribonuclease HIII [Enterococcus casseliflavus EC20] Length = 308 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 76/191 (39%), Gaps = 26/191 (13%) Query: 3 CNSIPERPHFELEAMVREKNM--WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FG 56 +++P++ + + V G DEVG G+ GP+VV A+ +P G Sbjct: 69 ASAVPDKKKATVSSTALPAGFSEKSVVGSDEVGNGSYFGPLVVCAVYAKKEQLPQLKALG 128 Query: 57 INDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDA----IYHAVENL- 111 + DSK ++ + ++ KI + + + ++ T+ A+ L Sbjct: 129 VKDSKMLTDPEIRKMAPKIKELVPYQLLTVTPSKYNEIQPKYNTVRMKVALHNQAIRLLL 188 Query: 112 ----QVIPRSALIDGRSIPED----LPCQAFAV-------IKGDSISLSIAAASIIAKVT 156 P + LID + ++ L + AV KG+ L++AAASI+ + Sbjct: 189 QKIAPETPDAILIDQFTSEKNYRTYLKSEQVAVTEKLYFATKGEQYHLAVAAASILCRTV 248 Query: 157 RDRLMRIAHKK 167 + A K+ Sbjct: 249 FLDELDAASKE 259 >gi|301056063|ref|YP_003794274.1| ribonuclease HIII [Bacillus anthracis CI] gi|300378232|gb|ADK07136.1| ribonuclease HIII [Bacillus cereus biovar anthracis str. CI] Length = 311 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 25/171 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 93 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 152 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPDGVLIDQFTQPD 212 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + KG+S+ L++AAASI+A+ + + KK Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 263 >gi|229141283|ref|ZP_04269821.1| Ribonuclease HIII [Bacillus cereus BDRD-ST26] gi|229198705|ref|ZP_04325404.1| Ribonuclease HIII [Bacillus cereus m1293] gi|228584781|gb|EEK42900.1| Ribonuclease HIII [Bacillus cereus m1293] gi|228642064|gb|EEK98357.1| Ribonuclease HIII [Bacillus cereus BDRD-ST26] Length = 332 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 25/171 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 114 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 173 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL + P LID + P+ Sbjct: 174 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPIKPEGVLIDQFTQPD 233 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + KG+S+ L++AAASI+A+ + + KK Sbjct: 234 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 284 >gi|229169283|ref|ZP_04296994.1| Ribonuclease HIII [Bacillus cereus AH621] gi|228614178|gb|EEK71292.1| Ribonuclease HIII [Bacillus cereus AH621] Length = 295 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 30/194 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + E+ +++ Sbjct: 77 GTMSILGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLH 136 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 137 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTKPEGILIDQFTQPD 196 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172 + KG+S+ L++AAASI+A+ + D L + A + P G Sbjct: 197 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMQLPK-G 255 Query: 173 FDSHVGYPTAKHQQ 186 V AK Q Sbjct: 256 AGKQVDIAAAKLIQ 269 >gi|229158161|ref|ZP_04286229.1| Ribonuclease HIII [Bacillus cereus ATCC 4342] gi|228625323|gb|EEK82082.1| Ribonuclease HIII [Bacillus cereus ATCC 4342] Length = 337 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 30/198 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 178 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 238 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172 + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 297 Query: 173 FDSHVGYPTAKHQQVIKE 190 V AK Q + + Sbjct: 298 AGKQVDIAAAKLIQKLGK 315 >gi|206977745|ref|ZP_03238636.1| ribonuclease HIII [Bacillus cereus H3081.97] gi|217962037|ref|YP_002340607.1| ribonuclease HIII [Bacillus cereus AH187] gi|226736827|sp|B7HRJ7|RNH3_BACC7 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|206744046|gb|EDZ55462.1| ribonuclease HIII [Bacillus cereus H3081.97] gi|217067519|gb|ACJ81769.1| ribonuclease HIII [Bacillus cereus AH187] Length = 311 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 25/171 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 93 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 152 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL + P LID + P+ Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPIKPEGVLIDQFTQPD 212 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + KG+S+ L++AAASI+A+ + + KK Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 263 >gi|229129840|ref|ZP_04258806.1| Ribonuclease HIII [Bacillus cereus BDRD-Cer4] gi|228653531|gb|EEL09403.1| Ribonuclease HIII [Bacillus cereus BDRD-Cer4] Length = 337 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 30/198 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 178 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 238 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172 + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 297 Query: 173 FDSHVGYPTAKHQQVIKE 190 V AK Q + + Sbjct: 298 AGKQVDIAAAKLIQKLGK 315 >gi|227431089|ref|ZP_03913147.1| ribonuclease HIII [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353129|gb|EEJ43297.1| ribonuclease HIII [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 303 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 26/168 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 W V G DEVG GA GP+ AA+ + N+ GI DSK ++ + +++ +I + Sbjct: 89 WSVLGSDEVGAGAYFGPLTTAAVYVSQENLEWVRALGIADSKTLTDDRMKKIAPQIIAQL 148 Query: 80 IISISSASHQYIDKHNIHKAT--LDAIYHAVE-------NLQVIPRSALIDGRSIPEDL- 129 + + + ++ + AI H + P++ LID + Sbjct: 149 PHHVVNLMPEKYNQLQPLHNVNQMKAISHNFALGKVLDKIFPITPQAILIDQFAQQSTYF 208 Query: 130 ----PCQAFAVI--------KGDSISLSIAAASIIAKVTRDRLMRIAH 165 + +I KG+ LS+AAASI+A+V M Sbjct: 209 NYLKNAKQQRIIHENVYFTTKGEQYHLSVAAASILARVVELDAMSKLS 256 >gi|229048264|ref|ZP_04193832.1| Ribonuclease HIII [Bacillus cereus AH676] gi|229147115|ref|ZP_04275474.1| Ribonuclease HIII [Bacillus cereus BDRD-ST24] gi|228636364|gb|EEK92835.1| Ribonuclease HIII [Bacillus cereus BDRD-ST24] gi|228722989|gb|EEL74366.1| Ribonuclease HIII [Bacillus cereus AH676] Length = 337 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 30/198 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 178 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 238 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172 + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 297 Query: 173 FDSHVGYPTAKHQQVIKE 190 V AK Q + + Sbjct: 298 AGKQVDIAAAKLIQKLGK 315 >gi|229112020|ref|ZP_04241563.1| Ribonuclease HIII [Bacillus cereus Rock1-15] gi|228671343|gb|EEL26644.1| Ribonuclease HIII [Bacillus cereus Rock1-15] Length = 337 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 30/198 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 178 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 238 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172 + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 297 Query: 173 FDSHVGYPTAKHQQVIKE 190 V AK Q + + Sbjct: 298 AGKQVDIAAAKLIQKLGK 315 >gi|229118045|ref|ZP_04247405.1| Ribonuclease HIII [Bacillus cereus Rock1-3] gi|228665494|gb|EEL20976.1| Ribonuclease HIII [Bacillus cereus Rock1-3] Length = 295 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 30/194 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 +AG DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 77 GTMSIAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQITAIAKQLLH 136 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 137 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTTPEGILIDQFTQPD 196 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172 + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 197 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMLLPK-G 255 Query: 173 FDSHVGYPTAKHQQ 186 V AK Q Sbjct: 256 AGKQVDIAAAKLIQ 269 >gi|229163546|ref|ZP_04291496.1| Ribonuclease HIII [Bacillus cereus R309803] gi|228619928|gb|EEK76804.1| Ribonuclease HIII [Bacillus cereus R309803] Length = 332 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 30/198 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 114 GTMSIVGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 173 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 174 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 233 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172 + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 234 TYYKYLAKQKEVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 292 Query: 173 FDSHVGYPTAKHQQVIKE 190 V AK Q + + Sbjct: 293 AGKQVDIAAAKLIQKLGK 310 >gi|30022631|ref|NP_834262.1| ribonuclease HIII [Bacillus cereus ATCC 14579] gi|73917842|sp|Q817J0|RNH3_BACCR RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|29898189|gb|AAP11463.1| Ribonuclease HII [Bacillus cereus ATCC 14579] Length = 311 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 30/198 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 93 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 152 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 212 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172 + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 271 Query: 173 FDSHVGYPTAKHQQVIKE 190 V AK Q + + Sbjct: 272 AGKQVDIAAAKLIQKLGK 289 >gi|309778053|ref|ZP_07672993.1| ribonuclease HIII [Erysipelotrichaceae bacterium 3_1_53] gi|308914190|gb|EFP59990.1| ribonuclease HIII [Erysipelotrichaceae bacterium 3_1_53] Length = 299 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 72/198 (36%), Gaps = 25/198 (12%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKI 63 E+ K ++P AG DEVG G GPV V A + ++ F GI DSK I Sbjct: 73 EKKTAGRSRPAYSKEIYPQAGSDEVGTGDYFGPVTVCATYVTAQDVEFLREQGIQDSKAI 132 Query: 64 SHKKREELYEKITS---SAIISISSASHQYIDKHNIHKATL-----DAIYHAVENLQVIP 115 + K+ +++ + +A++ I N A A H + L +P Sbjct: 133 DDTAIRRMAPKLIERLPHSLLILDNATYNRIHGENNMVAIKSRMHNQAYVHLRKKLGALP 192 Query: 116 RSALIDGR----------SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165 +ID D+ K ++ LS+AA SIIA+ ++ Sbjct: 193 EFCIIDQFVQKSSYYRYLQKERDVVYDIHFETKAENKYLSVAAGSIIARYA---FLKSFD 249 Query: 166 KKYPDYGFDSHVGYPTAK 183 Y F G + Sbjct: 250 AMCERYDFTFLKGAGSKV 267 >gi|228960825|ref|ZP_04122460.1| Ribonuclease HIII [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798847|gb|EEM45826.1| Ribonuclease HIII [Bacillus thuringiensis serovar pakistani str. T13001] Length = 332 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 30/198 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 114 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 173 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 174 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 233 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172 + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 234 TYYKYLAKQKQVQRENVYFTTKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 292 Query: 173 FDSHVGYPTAKHQQVIKE 190 V AK Q + + Sbjct: 293 AGKQVDIAAAKLIQKLGK 310 >gi|228935866|ref|ZP_04098676.1| Ribonuclease HIII [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823634|gb|EEM69456.1| Ribonuclease HIII [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 337 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 25/171 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 178 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLTKIAPTKPEGVLIDQFTQPD 238 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + KG+S+ L++AAASI+A+ + + KK Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 289 >gi|229032202|ref|ZP_04188175.1| Ribonuclease HIII [Bacillus cereus AH1271] gi|228728982|gb|EEL79985.1| Ribonuclease HIII [Bacillus cereus AH1271] Length = 337 Score = 80.1 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 48/198 (24%), Positives = 77/198 (38%), Gaps = 30/198 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKKIPLLKELGVKDSKNLNDDQITAIAKQLLH 178 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPD 238 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172 + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-G 297 Query: 173 FDSHVGYPTAKHQQVIKE 190 V AK Q + E Sbjct: 298 AGKQVDIAAAKLIQKLGE 315 >gi|145640736|ref|ZP_01796319.1| ribonuclease HII [Haemophilus influenzae R3021] gi|145274662|gb|EDK14525.1| ribonuclease HII [Haemophilus influenzae 22.4-21] Length = 56 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 25/47 (53%), Positives = 30/47 (63%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 + +AG+DEVGRG L G VV AA+ILDPNN G+ DSK K Sbjct: 6 QGYELIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKNFLRKT 52 >gi|229192756|ref|ZP_04319714.1| Ribonuclease HIII [Bacillus cereus ATCC 10876] gi|228590595|gb|EEK48456.1| Ribonuclease HIII [Bacillus cereus ATCC 10876] Length = 332 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 78/196 (39%), Gaps = 30/196 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 116 MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVV 175 Query: 80 IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129 S ++ ++ N K A+ NL P LID + P+ Sbjct: 176 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTY 235 Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174 + KG+S+ L++AAASI+A+ + D L++ A P G Sbjct: 236 YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELIKKAGMPLPK-GAG 294 Query: 175 SHVGYPTAKHQQVIKE 190 V AK Q + + Sbjct: 295 KQVDIAAAKLIQKLGK 310 >gi|228948280|ref|ZP_04110563.1| Ribonuclease HIII [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811267|gb|EEM57605.1| Ribonuclease HIII [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 332 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 25/171 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 114 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 173 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 174 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLTKIAPTKPEGVLIDQFTQPD 233 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + KG+S+ L++AAASI+A+ + + KK Sbjct: 234 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 284 >gi|118479705|ref|YP_896856.1| ribonuclease HIII [Bacillus thuringiensis str. Al Hakam] gi|196044948|ref|ZP_03112182.1| ribonuclease HIII [Bacillus cereus 03BB108] gi|229186809|ref|ZP_04313964.1| Ribonuclease HIII [Bacillus cereus BGSC 6E1] gi|118418930|gb|ABK87349.1| ribonuclease HII [Bacillus thuringiensis str. Al Hakam] gi|196024436|gb|EDX63109.1| ribonuclease HIII [Bacillus cereus 03BB108] gi|228596546|gb|EEK54211.1| Ribonuclease HIII [Bacillus cereus BGSC 6E1] Length = 337 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 25/171 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 178 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 238 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + KG+S+ L++AAASI+A+ + + KK Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 289 >gi|229152752|ref|ZP_04280936.1| Ribonuclease HIII [Bacillus cereus m1550] gi|228630730|gb|EEK87375.1| Ribonuclease HIII [Bacillus cereus m1550] Length = 337 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 25/171 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 178 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 238 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + KG+S+ L++AAASI+A+ + + KK Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKK 289 >gi|229105182|ref|ZP_04235831.1| Ribonuclease HIII [Bacillus cereus Rock3-28] gi|228678108|gb|EEL32336.1| Ribonuclease HIII [Bacillus cereus Rock3-28] Length = 295 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 25/171 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 +AG DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 77 GTMSIAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQITAIAKQLLH 136 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 137 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTTPEGILIDQFTQPD 196 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + KG+S+ L++AAASI+A+ + + KK Sbjct: 197 TYYKYLTKQKQVQREHVYFATKGESVHLAVAAASILARYSFVKQFDELSKK 247 >gi|49478678|ref|YP_038604.1| ribonuclease HIII [Bacillus thuringiensis serovar konkukian str. 97-27] gi|73917843|sp|Q6HCX2|RNH3_BACHK RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|49330234|gb|AAT60880.1| ribonuclease HII [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 311 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 25/171 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 93 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 152 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLTKIAPTKPEGVLIDQFTQPD 212 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + KG+S+ L++AAASI+A+ + + KK Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 263 >gi|189219365|ref|YP_001940006.1| ribonuclease HIII [Methylacidiphilum infernorum V4] gi|189186223|gb|ACD83408.1| Ribonuclease HIII [Methylacidiphilum infernorum V4] Length = 323 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 91/233 (39%), Gaps = 43/233 (18%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKIS 64 + E ++ + AGIDE G+G L GP+VVAA+ +D + + GI DSK+I Sbjct: 94 KASIGYEEVLHPEYFEAHAGIDECGKGDLFGPLVVAAVFVDKQSARFLVDAGIKDSKRIK 153 Query: 65 HKKRE-ELYEKITSSAIISISSASHQYID----KHNIHKATLDAIYHA-----VENLQVI 114 R +L ++ A S S + K + L A HA + +Q Sbjct: 154 SDSRLFQLAMEVKKKAPYGFFSLSPLQYNDLYEKKFKNLNLLLAWAHAKAYQRLLQVQSD 213 Query: 115 PRSALIDGRSIPEDLPCQAFAV---------IKGDSISLSIAAASIIAKVTRDRLMRIAH 165 + D + P L + K +S ++AAASI+A R + Sbjct: 214 CHRVVCDRFAHPWVLKQSFEKIGMQDALEQMTKAES-DPAVAAASILA---RAVFLEELS 269 Query: 166 KKYPDYGFDSHVGYPTA-----------KHQQVIKEKGPSCIHRLTFRPLRNL 207 K + GF G + K ++ +++ + +H F+ ++ + Sbjct: 270 KLGKEIGFSLLRGASSKTVEQAREIYLNKGKEALRK--VAKMH---FKTIQKI 317 >gi|52140950|ref|YP_085879.1| ribonuclease HIII [Bacillus cereus E33L] gi|81685974|sp|Q633N8|RNH3_BACCZ RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|51974419|gb|AAU15969.1| ribonuclease HII [Bacillus cereus E33L] Length = 311 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 25/171 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 93 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 152 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKLAPTKPEGVLIDQFTQPD 212 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + KG+S+ L++AAASI+A+ + + KK Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 263 >gi|296505031|ref|YP_003666731.1| ribonuclease HIII [Bacillus thuringiensis BMB171] gi|296326083|gb|ADH09011.1| ribonuclease HIII [Bacillus thuringiensis BMB171] Length = 311 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 25/171 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 93 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 152 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 212 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + KG+S+ L++AAASI+A+ + + KK Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 263 >gi|225866529|ref|YP_002751907.1| ribonuclease HIII [Bacillus cereus 03BB102] gi|254808011|sp|C1ETZ4|RNH3_BACC3 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|225790928|gb|ACO31145.1| ribonuclease HIII [Bacillus cereus 03BB102] Length = 311 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 25/171 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 93 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 152 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 212 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + KG+S+ L++AAASI+A+ + + KK Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 263 >gi|327439303|dbj|BAK15668.1| ribonuclease HIII [Solibacillus silvestris StLB046] Length = 309 Score = 79.3 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 66/171 (38%), Gaps = 27/171 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 V G DE G G GPV VAA+ + + I G+ DSK+++ ++ + Sbjct: 92 VLGSDETGTGDYFGPVTVAAVYVPADKISLVQELGVKDSKQLTDDYMRQIAPDLMKVCAY 151 Query: 82 SISSASHQYIDKHNIH-----KATLDAIYHAVENL-----QVIPRSALID--------GR 123 SI + + ++ K A++++ P+ LID Sbjct: 152 SILTLRNDKYNEIQARGYSQGKIKALLHNQALKHVLTKIAPETPQYILIDQFAERGIYYN 211 Query: 124 SIPEDLPCQAFAV---IKGDSISLSIAAASIIAKVTRDRLMRIAHKK--YP 169 I + V K +++ +++A ASI+A+ + M K YP Sbjct: 212 HIKNEKEIVRQNVLFSTKAENLHVAVATASILARYAFLKEMDRLAKVTGYP 262 >gi|323464759|gb|ADX76912.1| ribonuclease HIII [Staphylococcus pseudintermedius ED99] Length = 312 Score = 79.3 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 36/196 (18%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---SA 79 G DE G G GP+ V A + +IP G++DSK+++ KK L E++ + + Sbjct: 97 IGSDEAGSGDYFGPLTVCACYVSAQHIPILKELGVDDSKRLTDKKIVALAEQLVTFLPHS 156 Query: 80 IISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSIPEDLPCQ 132 ++ + + + + + + A+ H ++N+ +ID + E Sbjct: 157 LLVLDNPKYNERKQLGWSQVKMKAVLHNECIKNVLKKVDATEVDYIVIDQFAKQEVYEHY 216 Query: 133 AFAVI----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 A I KG+S SL+IAAASII++ + M K+ Y + G A Sbjct: 217 ALGAIPERQKTQFETKGESKSLAIAAASIISRYAFVKHMDQLSKR---YRMEILKG---A 270 Query: 183 KHQ------QVIKEKG 192 H+ +VI++ G Sbjct: 271 SHKVDVTAAKVIEKYG 286 >gi|229062239|ref|ZP_04199561.1| Ribonuclease HIII [Bacillus cereus AH603] gi|228717067|gb|EEL68746.1| Ribonuclease HIII [Bacillus cereus AH603] Length = 312 Score = 79.3 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 25/171 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + E+ +++ Sbjct: 93 GTMSILGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLH 152 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTKPEGILIDQFTQPD 212 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + KG+S+ L++AAASI+A+ + + KK Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKK 263 >gi|228917194|ref|ZP_04080751.1| Ribonuclease HIII [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842395|gb|EEM87486.1| Ribonuclease HIII [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 332 Score = 79.3 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 25/171 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 114 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 173 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 174 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPD 233 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + KG+S+ L++AAASI+A+ + + KK Sbjct: 234 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 284 >gi|228903073|ref|ZP_04067210.1| Ribonuclease HIII [Bacillus thuringiensis IBL 4222] gi|228856559|gb|EEN01082.1| Ribonuclease HIII [Bacillus thuringiensis IBL 4222] Length = 337 Score = 79.3 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 30/196 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 121 MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKSLNDDQITAIAKQLLHVV 180 Query: 80 IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129 S ++ ++ N K A+ NL P LID + P+ Sbjct: 181 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLGKMAPTKPEGVLIDQFTQPDTY 240 Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174 + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 241 YKYLTKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAG 299 Query: 175 SHVGYPTAKHQQVIKE 190 V AK Q + + Sbjct: 300 KQVDIAAAKLIQKLGK 315 >gi|222098020|ref|YP_002532077.1| ribonuclease hiii [Bacillus cereus Q1] gi|221242078|gb|ACM14788.1| ribonuclease HII [Bacillus cereus Q1] Length = 276 Score = 79.3 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 25/171 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 58 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 117 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL + P LID + P+ Sbjct: 118 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPIKPEGVLIDQFTQPD 177 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + KG+S+ L++AAASI+A+ + + KK Sbjct: 178 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 228 >gi|152976941|ref|YP_001376458.1| ribonuclease HIII [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025693|gb|ABS23463.1| ribonuclease HIII [Bacillus cytotoxicus NVH 391-98] Length = 338 Score = 79.3 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 51/198 (25%), Positives = 81/198 (40%), Gaps = 30/198 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK--- 74 + G DEVG G GP+ V A +D IP G+ DSK ++ + + ++ Sbjct: 119 GTMSIIGSDEVGTGDYFGPMTVVAAYVDAKQIPLLKELGVKDSKNLNDAQITAIAKQLLT 178 Query: 75 -ITSSAIISISSASHQYIDKHNIH-KATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 I S+++ + ++ DK N K A+ NL P LID + P+ Sbjct: 179 VIPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAIINLLAKIAPTKPDGILIDQFTQPD 238 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYG 172 + KG+SI L++AAASI+A+ + D L + A + P G Sbjct: 239 TYYKYLANQKQVQRDNVYFATKGESIHLAVAAASILARYSFVKQFDELSKKAGMQLPK-G 297 Query: 173 FDSHVGYPTAKHQQVIKE 190 V AK Q + + Sbjct: 298 AGKQVDIAAAKLIQKLGK 315 >gi|228967653|ref|ZP_04128674.1| Ribonuclease HIII [Bacillus thuringiensis serovar sotto str. T04001] gi|228792029|gb|EEM39610.1| Ribonuclease HIII [Bacillus thuringiensis serovar sotto str. T04001] Length = 332 Score = 79.3 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 30/196 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 116 MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVV 175 Query: 80 IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129 S ++ ++ N K A+ NL P LID + P+ Sbjct: 176 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLGKMAPTKPEGVLIDQFTQPDTY 235 Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174 + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 236 YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAG 294 Query: 175 SHVGYPTAKHQQVIKE 190 V AK Q + + Sbjct: 295 KQVDIAAAKLIQKLGK 310 >gi|116618810|ref|YP_819181.1| ribonuclease HIII [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122270990|sp|Q03VG4|RNH3_LEUMM RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|116097657|gb|ABJ62808.1| Ribonuclease HIII [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 303 Score = 79.3 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 26/168 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 W V G DEVG GA GP+ AA+ + N+ GI DSK ++ + +++ +I + Sbjct: 89 WSVLGSDEVGAGAYFGPLTTAAVYVSQENLEWVRALGIADSKTLTDDRMKKIAPQIIAKL 148 Query: 80 IISISSASHQYIDKHNIHKAT--LDAIYHAVENLQVI-------PRSALIDGRSIPEDL- 129 + + + ++ + AI H +V+ P++ LID + Sbjct: 149 PHHVVNLMPEKYNQLQPLHNVNQMKAISHNFALGKVLDKISPITPQAILIDQFAQQSTYF 208 Query: 130 ----PCQAFAVI--------KGDSISLSIAAASIIAKVTRDRLMRIAH 165 + +I KG+ LS+AAASI+A+V M Sbjct: 209 NYLKNAKQQRIIHENVYFTTKGEQYHLSVAAASILARVVELDAMSKLS 256 >gi|228974659|ref|ZP_04135225.1| Ribonuclease HIII [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228785062|gb|EEM33075.1| Ribonuclease HIII [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 337 Score = 79.3 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 30/196 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 121 MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVV 180 Query: 80 IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129 S ++ ++ N K A+ NL P LID + P+ Sbjct: 181 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTY 240 Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174 + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 241 YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAG 299 Query: 175 SHVGYPTAKHQQVIKE 190 V AK Q + + Sbjct: 300 KQVDIAAAKLIQKLGK 315 >gi|218899710|ref|YP_002448121.1| ribonuclease HIII [Bacillus cereus G9842] gi|218544745|gb|ACK97139.1| ribonuclease HIII [Bacillus cereus G9842] Length = 332 Score = 79.3 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 30/196 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 116 MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVV 175 Query: 80 IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129 S ++ ++ N K A+ NL P LID + P+ Sbjct: 176 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLGKMAPTKPEGVLIDQFTQPDTY 235 Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174 + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 236 YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAG 294 Query: 175 SHVGYPTAKHQQVIKE 190 V AK Q + + Sbjct: 295 KQVDIAAAKLIQKLGK 310 >gi|300173789|ref|YP_003772955.1| ribonuclease hiii [Leuconostoc gasicomitatum LMG 18811] gi|299888168|emb|CBL92136.1| ribonuclease hiii [Leuconostoc gasicomitatum LMG 18811] Length = 309 Score = 79.0 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 71/176 (40%), Gaps = 30/176 (17%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79 W V G DEVG GA GP+ AA+ + NI GI DSK ++ K ++ I + Sbjct: 94 WSVLGSDEVGAGAYFGPLTTAAVFVAKENISWVRQLGIADSKTLTDAKMRQIAPDIIAKL 153 Query: 80 IISISSASHQY--IDKHNIHKATLDAIYHAVENLQV-------IPRSALIDGRSIPEDL- 129 + + + I + N + + AI H +V +P LID + Sbjct: 154 PHHVVNLMPEKYNILQKNNNVNQMKAISHNFALGKVLEKIAPTVPTGILIDQFAQESTYF 213 Query: 130 ------------PCQAFAVIKGDSISLSIAAASIIAKVTR----DRLMRIAHKKYP 169 + KG+ LS+AAASI+A+V D+L A + P Sbjct: 214 KYLNNANQSNIVQQNVYFTTKGEQYHLSVAAASILARVVELDSLDKLSDEAGMRLP 269 >gi|319892130|ref|YP_004149005.1| Ribonuclease HIII [Staphylococcus pseudintermedius HKU10-03] gi|317161826|gb|ADV05369.1| Ribonuclease HIII [Staphylococcus pseudintermedius HKU10-03] Length = 312 Score = 79.0 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 36/196 (18%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---SA 79 G DE G G GP+ V A + +IP G++DSK+++ KK L E++ + + Sbjct: 97 IGSDEAGSGDYFGPLTVCACYVSAQHIPILKELGVDDSKRLTDKKIVALAEQLVTFLPHS 156 Query: 80 IISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSIPEDLPCQ 132 ++ + + + + + + A+ H ++N+ +ID + E Sbjct: 157 LLVLDNPKYNERKQLGWSQVKMKAVLHNECIKNVLKKVDATEVDYIVIDQFAKQEVYEHY 216 Query: 133 AFAVI----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 A I KG+S SL+IAAASII++ + M K+ Y + G A Sbjct: 217 ALGAIPERQKTQFETKGESKSLAIAAASIISRYAFVKHMDQLSKR---YRMEILKG---A 270 Query: 183 KHQ------QVIKEKG 192 H+ +VI++ G Sbjct: 271 SHKVDVTAAKVIEKYG 286 >gi|228941735|ref|ZP_04104282.1| Ribonuclease HIII [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228981253|ref|ZP_04141553.1| Ribonuclease HIII [Bacillus thuringiensis Bt407] gi|228778453|gb|EEM26720.1| Ribonuclease HIII [Bacillus thuringiensis Bt407] gi|228817947|gb|EEM64025.1| Ribonuclease HIII [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 332 Score = 79.0 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 30/196 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 116 MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVV 175 Query: 80 IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129 S ++ ++ N K A+ NL P LID + P+ Sbjct: 176 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTY 235 Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174 + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 236 YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAG 294 Query: 175 SHVGYPTAKHQQVIKE 190 V AK Q + + Sbjct: 295 KQVDIAAAKLIQKLGK 310 >gi|196042128|ref|ZP_03109412.1| ribonuclease HIII [Bacillus cereus NVH0597-99] gi|229093650|ref|ZP_04224750.1| Ribonuclease HIII [Bacillus cereus Rock3-42] gi|196027064|gb|EDX65687.1| ribonuclease HIII [Bacillus cereus NVH0597-99] gi|228689737|gb|EEL43544.1| Ribonuclease HIII [Bacillus cereus Rock3-42] Length = 337 Score = 79.0 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 25/171 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 178 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 238 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + KG+S+ L++AAASI+A+ + + KK Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 289 >gi|322490645|emb|CBZ25907.1| putative ribonuclease H [Leishmania mexicana MHOM/GT/2001/U1103] Length = 316 Score = 79.0 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 80/225 (35%), Gaps = 51/225 (22%) Query: 24 WPVAGIDEVGRGALAGPVVV-AAII-LDPNNIPF---GINDSKKISHKKREELYEKITSS 78 + V GIDE GRG++ GP+V A+I L ++ + D K + + R +K+ Sbjct: 44 YLVLGIDEAGRGSVIGPMVYTGAVISLGEHDELVRLCHVADRKMPNVRPRLASLQKLRQL 103 Query: 79 AII--SISSASHQYIDKHNIHKA--TLDAIYH--AVENLQV-------IPRSALIDGRSI 125 S + I L+A+ H A++ + +A +D Sbjct: 104 KTFRSFTVFVSSEEISNTMAGHNGRNLNALSHETAIQIISEATLASAGKLCAAYVDTVGP 163 Query: 126 PEDLPC---------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 P + K +S ++AAS++AK RD + + + Sbjct: 164 PGTYQARLAGRFPHLRVTVAKKAESKFPIVSAASVVAKTARDAAIEALGE-------NIG 216 Query: 177 VGYP-TAKHQQVIKEKGPSCIH------------RLTFRPLRNLS 208 GY + ++ S +H R ++ P+ L+ Sbjct: 217 SGYLIDPRTMAWLR----SPVHRCFAFSHAYDSVRQSWGPVVQLA 257 >gi|229072058|ref|ZP_04205267.1| Ribonuclease HIII [Bacillus cereus F65185] gi|228710992|gb|EEL62958.1| Ribonuclease HIII [Bacillus cereus F65185] Length = 337 Score = 79.0 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 30/196 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 121 MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVV 180 Query: 80 IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129 S ++ ++ N K A+ NL P LID + P+ Sbjct: 181 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTY 240 Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174 + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 241 YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAG 299 Query: 175 SHVGYPTAKHQQVIKE 190 V AK Q + + Sbjct: 300 KQVDIAAAKLIQKLGK 315 >gi|326942340|gb|AEA18236.1| ribonuclease HIII [Bacillus thuringiensis serovar chinensis CT-43] Length = 311 Score = 79.0 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 30/196 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 95 MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVV 154 Query: 80 IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129 S ++ ++ N K A+ NL P LID + P+ Sbjct: 155 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTY 214 Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174 + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 215 YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAG 273 Query: 175 SHVGYPTAKHQQVIKE 190 V AK Q + + Sbjct: 274 KQVDIAAAKLIQKLGK 289 >gi|228923300|ref|ZP_04086588.1| Ribonuclease HIII [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836254|gb|EEM81607.1| Ribonuclease HIII [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 337 Score = 79.0 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 86/224 (38%), Gaps = 38/224 (16%) Query: 4 NSIPERPHFELEAMVREKNMWP--------VAGIDEVGRGALAGPVVVAAIILDPNNIP- 54 ++ +RP ++ V P + G DEVG G GP+ V A+ +D IP Sbjct: 93 QTVSQRPKTTVKKPVDSHRYAPPASISTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPL 152 Query: 55 ---FGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKH-----NIHKATLDAIYH 106 G+ DSK ++ + + +++ S ++ ++ N K Sbjct: 153 LKELGVKDSKNLNDDQITAIAKQLLHVVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNK 212 Query: 107 AVENL-----QVIPRSALIDGRSIPEDL-----------PCQAFAVIKGDSISLSIAAAS 150 A+ NL P LID + P+ + KG+S+ L++AAAS Sbjct: 213 AITNLLAKMAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENVYFATKGESVHLAVAAAS 272 Query: 151 IIAKVT----RDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 I+A+ + D L + A P G V AK Q + + Sbjct: 273 ILARYSFVKQFDELSKKAGMPLPK-GASKQVDIAAAKLIQKLGK 315 >gi|229916367|ref|YP_002885013.1| ribonuclease HIII [Exiguobacterium sp. AT1b] gi|229467796|gb|ACQ69568.1| ribonuclease HIII [Exiguobacterium sp. AT1b] Length = 305 Score = 79.0 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 74/195 (37%), Gaps = 29/195 (14%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79 W V G DEVG+G GP+VV A + + I G+ DSK++S + + + + ++ Sbjct: 88 WSVVGSDEVGKGDYFGPLVVVAAFVSRDQIALVKELGVKDSKQLSDPEIIRIAKDLHATI 147 Query: 80 IISISSASHQYIDKHN-------IHKATLDAIYHA-VENLQVIPRSALIDGRSIPEDLPC 131 ++ + + + +A A +E L P + LID + Sbjct: 148 PYQKATLHNPTYNNMQRTMTQGKMTAIAHNAALRALLEKLGQKPDAILIDQFAEKSVYYQ 207 Query: 132 QAFAV-----------IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 A K + + +++AAASI+A+ + M K+ G G Sbjct: 208 HLRAERDIVRDDVYFSTKAEGLHVAVAAASILARAFFLKEMDKLSKQA---GLTLPKGAG 264 Query: 181 TAKHQQV---IKEKG 192 Q I+ G Sbjct: 265 AKVDQVAAQIIRRHG 279 >gi|324328447|gb|ADY23707.1| ribonuclease HIII [Bacillus thuringiensis serovar finitimus YBT-020] Length = 311 Score = 79.0 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 25/171 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 93 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 152 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 212 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + KG+S+ L++AAASI+A+ + + KK Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 263 >gi|325568912|ref|ZP_08145205.1| ribonuclease HIII [Enterococcus casseliflavus ATCC 12755] gi|325157950|gb|EGC70106.1| ribonuclease HIII [Enterococcus casseliflavus ATCC 12755] Length = 308 Score = 79.0 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 73/191 (38%), Gaps = 26/191 (13%) Query: 3 CNSIPERPHFELEAMVREKNM--WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FG 56 +++P++ + V G DEVG G+ GP+VV A+ +P G Sbjct: 69 ASAVPDKKKATVSTTALPAGFSEKSVVGSDEVGNGSYFGPLVVCAVYAKKEQLPQLKALG 128 Query: 57 INDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDA----IYHAVENL- 111 + DSK ++ + ++ KI + + + ++ T+ A+ L Sbjct: 129 VKDSKMLTDPEIRKMAPKIKELVPYQLLTVTPSKYNEIQPKYNTVRMKVALHNQAIRLLL 188 Query: 112 ----QVIPRSALIDGRSIPEDL-----------PCQAFAVIKGDSISLSIAAASIIAKVT 156 P + LID + ++ + + KG+ L++AAASI+ + Sbjct: 189 QKIAPETPDAILIDQFTSEKNYRTYLKSEQAAVTEKLYFATKGEQYHLAVAAASILCRTV 248 Query: 157 RDRLMRIAHKK 167 + A K+ Sbjct: 249 FLDELEAASKE 259 >gi|228910380|ref|ZP_04074195.1| Ribonuclease HIII [Bacillus thuringiensis IBL 200] gi|228849146|gb|EEM93985.1| Ribonuclease HIII [Bacillus thuringiensis IBL 200] Length = 332 Score = 78.6 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 25/171 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 114 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 173 Query: 78 SAIISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPE 127 S ++ ++ N K A+ NL P LID + P+ Sbjct: 174 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 233 Query: 128 DL-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + KG+S+ L++AAASI+A+ + + KK Sbjct: 234 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 284 >gi|282908430|ref|ZP_06316261.1| LOW QUALITY PROTEIN: ribonuclease HIII [Staphylococcus aureus subsp. aureus WW2703/97] gi|282328095|gb|EFB58377.1| LOW QUALITY PROTEIN: ribonuclease HIII [Staphylococcus aureus subsp. aureus WW2703/97] Length = 247 Score = 78.6 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 25/180 (13%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR 68 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 69 SLEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKI 127 Query: 69 EELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSA 118 EL E++ + +++++ + + + + A+ H A++N+ Sbjct: 128 VELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYI 187 Query: 119 LIDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 +ID + E LP + KG+S SL+IA ASII++ M KKY Sbjct: 188 VIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFITYMDQISKKY 247 >gi|229180875|ref|ZP_04308210.1| Ribonuclease HIII [Bacillus cereus 172560W] gi|228602432|gb|EEK59918.1| Ribonuclease HIII [Bacillus cereus 172560W] Length = 337 Score = 78.6 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 30/196 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 121 MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVV 180 Query: 80 IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129 S ++ ++ N K A+ NL P LID + P+ Sbjct: 181 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTY 240 Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174 + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 241 YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAG 299 Query: 175 SHVGYPTAKHQQVIKE 190 V AK Q + + Sbjct: 300 KQVDIAAAKLIQKLGK 315 >gi|206969869|ref|ZP_03230823.1| ribonuclease HIII [Bacillus cereus AH1134] gi|206735557|gb|EDZ52725.1| ribonuclease HIII [Bacillus cereus AH1134] Length = 311 Score = 78.6 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 30/196 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 95 MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVV 154 Query: 80 IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129 S ++ ++ N K A+ NL P LID + P+ Sbjct: 155 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTY 214 Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174 + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 215 YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAG 273 Query: 175 SHVGYPTAKHQQVIKE 190 V AK Q + + Sbjct: 274 KQVDIAAAKLIQKLGK 289 >gi|313901027|ref|ZP_07834515.1| ribonuclease HIII [Clostridium sp. HGF2] gi|312953985|gb|EFR35665.1| ribonuclease HIII [Clostridium sp. HGF2] Length = 300 Score = 78.6 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 44/197 (22%), Positives = 75/197 (38%), Gaps = 28/197 (14%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKIT 76 K ++P AG DEVG G GPV V A + ++ F GI DSK I + K+ Sbjct: 87 KAIYPQAGSDEVGTGDYFGPVTVCATCVRHEDVEFLRSLGIQDSKAIDDTAIRRMAPKLM 146 Query: 77 S---SAIISISSASHQYIDKHNIHKATL-----DAIYHAVENLQVIPRSALIDGR----- 123 +++ + +A++ I N A A H + + +P+ +ID Sbjct: 147 ERLPHSLLILDNATYNRIHGENNMVAIKSRMHNQAYVHLRKKMGSLPQFCIIDQFVQKTS 206 Query: 124 -----SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 ++ K ++ LS+AA SIIA+ ++ Y F G Sbjct: 207 YYRYLKHEREVVYDIHFETKAENKYLSVAAGSIIARYA---FLKAFDAMCEQYDFTFLKG 263 Query: 179 YPTAKH---QQVIKEKG 192 + ++ + G Sbjct: 264 AGSKVDQNIREFVAMHG 280 >gi|329725159|gb|EGG61648.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 21172] Length = 318 Score = 78.2 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 52/214 (24%), Positives = 80/214 (37%), Gaps = 37/214 (17%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR 68 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 91 SLEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKI 149 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLD--------AIYHAVENL-----QVIP 115 EL E++ + S + DK+NI +A A++N+ Sbjct: 150 VELAEQLVA---FIPHSLLTLHNDKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQL 206 Query: 116 RSALIDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165 +ID + E LP + KG+S SL+IA ASII++ M Sbjct: 207 DYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFITYMDQIS 266 Query: 166 KKYPDYGFDSHVGYPTAKHQQV---IKEKGPSCI 196 K G IK+ G S + Sbjct: 267 KY---INMTIPKGAGAKVDVIAAKIIKKYGLSRL 297 >gi|269202752|ref|YP_003282021.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ED98] gi|262075042|gb|ACY11015.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ED98] Length = 312 Score = 78.2 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 52/214 (24%), Positives = 80/214 (37%), Gaps = 37/214 (17%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR 68 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 85 SLEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKI 143 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLD--------AIYHAVENL-----QVIP 115 EL E++ + S + DK+NI +A A++N+ Sbjct: 144 VELAEQLVA---FIPHSLLTLHNDKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQL 200 Query: 116 RSALIDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165 +ID + E LP + KG+S SL+IA ASII++ M Sbjct: 201 DYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFITYMDQIS 260 Query: 166 KKYPDYGFDSHVGYPTAKHQQV---IKEKGPSCI 196 K G IK+ G S + Sbjct: 261 KY---INMTIPKGAGAKVDVIAAKIIKKYGLSRL 291 >gi|229081809|ref|ZP_04214301.1| Ribonuclease HIII [Bacillus cereus Rock4-2] gi|228701397|gb|EEL53891.1| Ribonuclease HIII [Bacillus cereus Rock4-2] Length = 332 Score = 78.2 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 30/196 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 116 MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVV 175 Query: 80 IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129 S ++ ++ N K A+ NL P LID + P+ Sbjct: 176 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTY 235 Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174 + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 236 YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAG 294 Query: 175 SHVGYPTAKHQQVIKE 190 V AK Q + + Sbjct: 295 KQVDIAAAKLIQKLGK 310 >gi|170016688|ref|YP_001727607.1| ribonuclease H [Leuconostoc citreum KM20] gi|238688947|sp|B1MXB1|RNH3_LEUCK RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|169803545|gb|ACA82163.1| Ribonuclease H [Leuconostoc citreum KM20] Length = 308 Score = 78.2 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 26/170 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 W V G DEVG GA GP+ AA+ + N++ GI DSK ++ K ++ +I Sbjct: 93 WSVIGSDEVGAGAYFGPLTTAAVFVSKNDLDWVKALGIADSKTLTDAKMRDIAPEIIQRL 152 Query: 80 IISISSASHQYIDKHNIH-------KATLDAIYHAVEN--LQVIPRSALIDGRSIPEDL- 129 + + + + H + + H V + P + LID + Sbjct: 153 PHHVVNLLPEKYNALQPHNNVNQLKAISHNFALHKVLEKIAPITPDAILIDQFAQATTYF 212 Query: 130 ----PCQAFAVI--------KGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 Q VI KG+ LS+AAASI+A+V M + Sbjct: 213 NYLSKAQQSPVIRQNVYFTTKGEQYHLSVAAASILARVVELDTMVALSHE 262 >gi|319776859|ref|YP_004136510.1| ribonuclease [Mycoplasma fermentans M64] gi|318037934|gb|ADV34133.1| Ribonuclease [Mycoplasma fermentans M64] Length = 249 Score = 78.2 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 71/188 (37%), Gaps = 33/188 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 + G+DEVG G GP+ AA+ + + I G+ DSKK+S K+ + + K+ Sbjct: 17 LIGVDEVGVGDYFGPLCCAAVFIPQDKIQEVIDLGVKDSKKLSDKQIKMMAYKLKKIVKY 76 Query: 82 SISSASHQ----YIDKHNIHKATLDAIYHAVENLQVIP---RSALIDGRSIPEDL----- 129 +I S + +N + + A+ +LQ ID S + Sbjct: 77 AIHHLSPKGYNTLNKTYNGNFLKMFTHLSAISSLQEKIGAVDYVFIDQYSTKSSIERYYT 136 Query: 130 ------PCQAFAVIKGD--------SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 F I+GD SISL +A ASIIA RD + K Y Sbjct: 137 DLVKLNNWADFNQIQGDILLAYKAESISLEVACASIIA---RDYFLYFMQKMNEQYNCKF 193 Query: 176 HVGYPTAK 183 G + Sbjct: 194 PFGAGSKV 201 >gi|314936680|ref|ZP_07844027.1| ribonuclease HIII [Staphylococcus hominis subsp. hominis C80] gi|313655299|gb|EFS19044.1| ribonuclease HIII [Staphylococcus hominis subsp. hominis C80] Length = 308 Score = 78.2 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 36/200 (18%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---SA 79 G DE G G GP+ V A + +I G++DSKK++ K EL E++ + + Sbjct: 92 IGSDEAGSGDYFGPLTVCAAYVSKEHIDILRTLGVDDSKKLTDTKIIELAEQLITFIPHS 151 Query: 80 IISISSASHQYIDKHNIHKATLDAIYH--AVENLQVIP-----RSALIDGRS-------- 124 ++++++ + + + A+ H A++N+ +ID + Sbjct: 152 LLTLNNTKYNERQALGWSQVKMKAVLHNEAIKNVTNKIDTKALDYIVIDQFAERNVYKRY 211 Query: 125 --IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 P Q KG+S SL+IAAASII++ + M K FD G A Sbjct: 212 ALSDLPFPNQTKFETKGESKSLAIAAASIISRYAFIKHMNSISK---MMHFDIPKG---A 265 Query: 183 KHQ------QVIKEKGPSCI 196 H+ Q+I++ S + Sbjct: 266 SHKVDLIAAQIIEKYNISKL 285 >gi|308189676|ref|YP_003922607.1| ribonuclease H [Mycoplasma fermentans JER] gi|307624418|gb|ADN68723.1| ribonuclease H [Mycoplasma fermentans JER] Length = 249 Score = 78.2 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 71/188 (37%), Gaps = 33/188 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 + G+DEVG G GP+ AA+ + + I G+ DSKK+S K+ + + K+ Sbjct: 17 LIGVDEVGVGDYFGPLCCAAVFIPQDKIQEVIDLGVKDSKKLSDKQIKMMAYKLKKIVKY 76 Query: 82 SISSASHQ----YIDKHNIHKATLDAIYHAVENLQVIP---RSALIDGRSIPEDL----- 129 +I S + +N + + A+ +LQ ID S + Sbjct: 77 AIHHLSPKGYNTLNKTYNGNFLKMFTHLSAISSLQEKIGAVDYVFIDQYSTKSSIERYYT 136 Query: 130 ------PCQAFAVIKGD--------SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 F I+GD SISL +A ASIIA RD + K Y Sbjct: 137 DLVKLNNWADFNQIQGDILLAYKAESISLEVACASIIA---RDYFLYFMQKMNEQYNCKF 193 Query: 176 HVGYPTAK 183 G + Sbjct: 194 PFGAGSKV 201 >gi|238809644|dbj|BAH69434.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 250 Score = 78.2 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 71/188 (37%), Gaps = 33/188 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 + G+DEVG G GP+ AA+ + + I G+ DSKK+S K+ + + K+ Sbjct: 18 LIGVDEVGVGDYFGPLCCAAVFIPQDKIQEVIDLGVKDSKKLSDKQIKMMAYKLKKIVKY 77 Query: 82 SISSASHQ----YIDKHNIHKATLDAIYHAVENLQVIP---RSALIDGRSIPEDL----- 129 +I S + +N + + A+ +LQ ID S + Sbjct: 78 AIHHLSPKGYNTLNKTYNGNFLKMFTHLSAISSLQEKIGAVDYVFIDQYSTKSSIERYYT 137 Query: 130 ------PCQAFAVIKGD--------SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 F I+GD SISL +A ASIIA RD + K Y Sbjct: 138 DLVKLNNWADFNQIQGDILLAYKAESISLEVACASIIA---RDYFLYFMQKMNEQYNCKF 194 Query: 176 HVGYPTAK 183 G + Sbjct: 195 PFGAGSKV 202 >gi|228476267|ref|ZP_04060969.1| ribonuclease hiii [Staphylococcus hominis SK119] gi|228269670|gb|EEK11172.1| ribonuclease hiii [Staphylococcus hominis SK119] Length = 308 Score = 78.2 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 36/200 (18%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---SA 79 G DE G G GP+ V A + +I G++DSKK++ K EL E++ + + Sbjct: 92 IGSDEAGSGDYFGPLTVCAAYVSKEHIDILRTLGVDDSKKLTDTKIIELAEQLITFIPHS 151 Query: 80 IISISSASHQYIDKHNIHKATLDAIYH--AVENLQVIP-----RSALIDGRS-------- 124 ++++++ + + + A+ H A++N+ +ID + Sbjct: 152 LLTLNNTKYNERQALGWSQVKMKAVLHNEAIKNVTNKIDTKALDYIVIDQFAERNVYKRY 211 Query: 125 --IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 P Q KG+S SL+IAAASII++ + M K FD G A Sbjct: 212 ALSDLPFPNQTKFETKGESKSLAIAAASIISRYAFIKHMNSISK---MMHFDIPKG---A 265 Query: 183 KHQ------QVIKEKGPSCI 196 H+ Q+I++ S + Sbjct: 266 SHKVDLIAAQIIEKYNISKL 285 >gi|15924130|ref|NP_371664.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus Mu50] gi|15926724|ref|NP_374257.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus N315] gi|148267632|ref|YP_001246575.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus JH9] gi|150393687|ref|YP_001316362.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus JH1] gi|156979462|ref|YP_001441721.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus Mu3] gi|253317077|ref|ZP_04840290.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005926|ref|ZP_05144527.2| ribonuclease HIII [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795130|ref|ZP_05644109.1| ribonuclease HIII [Staphylococcus aureus A9781] gi|258407162|ref|ZP_05680311.1| ribonuclease HIII [Staphylococcus aureus A9763] gi|258421747|ref|ZP_05684668.1| ribonuclease HIII [Staphylococcus aureus A9719] gi|258432909|ref|ZP_05688598.1| ribonuclease HIII [Staphylococcus aureus A9299] gi|258443399|ref|ZP_05691742.1| ribonuclease HIII [Staphylococcus aureus A8115] gi|258446072|ref|ZP_05694234.1| ribonuclease HIII [Staphylococcus aureus A6300] gi|258449815|ref|ZP_05697913.1| ribonuclease HIII [Staphylococcus aureus A6224] gi|258454914|ref|ZP_05702877.1| ribonuclease HIII [Staphylococcus aureus A5937] gi|282894167|ref|ZP_06302398.1| ribonuclease HIII [Staphylococcus aureus A8117] gi|282928662|ref|ZP_06336259.1| ribonuclease HIII [Staphylococcus aureus A10102] gi|295405944|ref|ZP_06815753.1| ribonuclease HIII [Staphylococcus aureus A8819] gi|296275627|ref|ZP_06858134.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MR1] gi|297246504|ref|ZP_06930342.1| ribonuclease HIII [Staphylococcus aureus A8796] gi|73917849|sp|Q99UW5|RNH3_STAAM RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|73917850|sp|Q7A647|RNH3_STAAN RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|166226672|sp|A7X163|RNH3_STAA1 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|189043676|sp|A6U0V7|RNH3_STAA2 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|189043677|sp|A5IS26|RNH3_STAA9 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|13700940|dbj|BAB42236.1| SA0987 [Staphylococcus aureus subsp. aureus N315] gi|14246910|dbj|BAB57302.1| putative ribonuclease HIII [Staphylococcus aureus subsp. aureus Mu50] gi|147740701|gb|ABQ48999.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus JH9] gi|149946139|gb|ABR52075.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus JH1] gi|156721597|dbj|BAF78014.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257789102|gb|EEV27442.1| ribonuclease HIII [Staphylococcus aureus A9781] gi|257841317|gb|EEV65762.1| ribonuclease HIII [Staphylococcus aureus A9763] gi|257842080|gb|EEV66508.1| ribonuclease HIII [Staphylococcus aureus A9719] gi|257849349|gb|EEV73326.1| ribonuclease HIII [Staphylococcus aureus A9299] gi|257851489|gb|EEV75428.1| ribonuclease HIII [Staphylococcus aureus A8115] gi|257855130|gb|EEV78071.1| ribonuclease HIII [Staphylococcus aureus A6300] gi|257856735|gb|EEV79638.1| ribonuclease HIII [Staphylococcus aureus A6224] gi|257862794|gb|EEV85559.1| ribonuclease HIII [Staphylococcus aureus A5937] gi|282589701|gb|EFB94787.1| ribonuclease HIII [Staphylococcus aureus A10102] gi|282763653|gb|EFC03782.1| ribonuclease HIII [Staphylococcus aureus A8117] gi|285816820|gb|ADC37307.1| Ribonuclease HIII [Staphylococcus aureus 04-02981] gi|294969379|gb|EFG45399.1| ribonuclease HIII [Staphylococcus aureus A8819] gi|297176610|gb|EFH35873.1| ribonuclease HIII [Staphylococcus aureus A8796] gi|312829533|emb|CBX34375.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128537|gb|EFT84542.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus CGS03] Length = 312 Score = 78.2 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 52/214 (24%), Positives = 80/214 (37%), Gaps = 37/214 (17%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR 68 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 85 SLEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKI 143 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLD--------AIYHAVENL-----QVIP 115 EL E++ + S + DK+NI +A A++N+ Sbjct: 144 VELAEQLVA---FIPHSLLTLHNDKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQL 200 Query: 116 RSALIDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165 +ID + E LP + KG+S SL+IA ASII++ M Sbjct: 201 DYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFITYMDQIS 260 Query: 166 KKYPDYGFDSHVGYPTAKHQQV---IKEKGPSCI 196 K G IK+ G S + Sbjct: 261 KY---INMTIPKGAGAKVDVIAAKIIKKYGLSRL 291 >gi|228954825|ref|ZP_04116845.1| Ribonuclease HIII [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804814|gb|EEM51413.1| Ribonuclease HIII [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 337 Score = 78.2 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 30/196 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 121 MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQIIAIAKQLLHVV 180 Query: 80 IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129 S ++ ++ N K A+ NL P LID + P+ Sbjct: 181 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTY 240 Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFD 174 + KG+S+ L++AAASI+A+ + D L + A P G Sbjct: 241 YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAG 299 Query: 175 SHVGYPTAKHQQVIKE 190 V AK Q + + Sbjct: 300 KQVDIAAAKLIQKLGK 315 >gi|52081363|ref|YP_080154.1| ribonuclease HIII [Bacillus licheniformis ATCC 14580] gi|52786740|ref|YP_092569.1| ribonuclease HIII [Bacillus licheniformis ATCC 14580] gi|319647270|ref|ZP_08001492.1| ribonuclease HIII [Bacillus sp. BT1B_CT2] gi|73917844|sp|Q65GD8|RNH3_BACLD RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|52004574|gb|AAU24516.1| ribonuclease HIII [Bacillus licheniformis ATCC 14580] gi|52349242|gb|AAU41876.1| RnhC [Bacillus licheniformis ATCC 14580] gi|317390617|gb|EFV71422.1| ribonuclease HIII [Bacillus sp. BT1B_CT2] Length = 313 Score = 78.2 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 24/170 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 V G DEVG G GP+ VA + D +P G+ DSK + + ++ + Sbjct: 94 GSMSVIGSDEVGTGDYFGPITVACVYADKAKLPLLKELGVKDSKNLKDPQIVQIARDLIK 153 Query: 78 SAIISISSASHQ---YIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGRSIPE 127 + S+ ++ + + + + + A A+ NL P + LID + P Sbjct: 154 TVPYSLLVLRNEKYNEMQEKGMSQGKMKALLHNQAIGNLLKKLDGTRPEAILIDQFAEPA 213 Query: 128 DL----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + + K + I LS+AAASIIA+ + M K+ Sbjct: 214 VYFKHLAGKTAVKERTYFSTKAEGIHLSVAAASIIARYSFLMEMDKLSKQ 263 >gi|282916389|ref|ZP_06324151.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus D139] gi|283770200|ref|ZP_06343092.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus H19] gi|282319829|gb|EFB50177.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus D139] gi|283460347|gb|EFC07437.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus H19] Length = 318 Score = 78.2 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 31/211 (14%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR 68 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 91 SLEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKI 149 Query: 69 EELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSA 118 EL E++ + +++++ + + + + A+ H A++N+ Sbjct: 150 VELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYI 209 Query: 119 LIDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 +ID + E LP + KG+S SL+IA ASII++ M K Sbjct: 210 VIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK-- 267 Query: 169 PDYGFDSHVGYPTAKHQQV---IKEKGPSCI 196 + G T IK+ G S + Sbjct: 268 -NINMTIPKGAGTKVDVIAAKIIKKYGLSRL 297 >gi|229175263|ref|ZP_04302778.1| Ribonuclease HIII [Bacillus cereus MM3] gi|228608095|gb|EEK65402.1| Ribonuclease HIII [Bacillus cereus MM3] Length = 332 Score = 78.2 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 25/169 (14%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 116 MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVV 175 Query: 80 IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129 S ++ ++ N K A+ NL P LID + P+ Sbjct: 176 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTY 235 Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + KG+S+ L++AAASI+A+ + + KK Sbjct: 236 YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 284 >gi|296111199|ref|YP_003621580.1| ribonuclease HIII [Leuconostoc kimchii IMSNU 11154] gi|295832730|gb|ADG40611.1| ribonuclease HIII [Leuconostoc kimchii IMSNU 11154] Length = 307 Score = 78.2 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 26/170 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 W V G DEVG GA GP+ AA+ + ++ GI DSK ++ K ++ +I + Sbjct: 93 WSVLGSDEVGAGAYFGPLTTAAVFVSQRDLKWVRQLGIADSKTLTDDKMRQIAPEIIARL 152 Query: 80 IISISSASHQYIDKHNI--HKATLDAIYHAVENLQV-------IPRSALIDGRSIPEDLP 130 + + + ++ + L AI H +V P LID + Sbjct: 153 PHHVVNLMPEKYNQLQPTNNVNQLKAISHNFVLGKVLEKIDPTRPDGILIDQFAQESTYF 212 Query: 131 -----CQAFAVI--------KGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + +I KG+ LS+AAASI+A+V M ++ Sbjct: 213 NYLQRAKQQHIIRQNVYFTTKGEQYHLSVAAASILARVVELDSMASLSQE 262 >gi|229026003|ref|ZP_04182387.1| Ribonuclease HIII [Bacillus cereus AH1272] gi|228735284|gb|EEL85895.1| Ribonuclease HIII [Bacillus cereus AH1272] Length = 332 Score = 77.8 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 25/169 (14%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 116 MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVV 175 Query: 80 IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129 S ++ ++ N K A+ NL P LID + P+ Sbjct: 176 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTY 235 Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + KG+S+ L++AAASI+A+ + + KK Sbjct: 236 YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 284 >gi|229019776|ref|ZP_04176579.1| Ribonuclease HIII [Bacillus cereus AH1273] gi|228741501|gb|EEL91698.1| Ribonuclease HIII [Bacillus cereus AH1273] Length = 337 Score = 77.8 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 25/169 (14%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 121 MSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVV 180 Query: 80 IISISSASHQYIDKH-----NIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129 S ++ ++ N K A+ NL P LID + P+ Sbjct: 181 PYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTY 240 Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + KG+S+ L++AAASI+A+ + + KK Sbjct: 241 YKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFNELSKK 289 >gi|330685731|gb|EGG97367.1| ribonuclease HIII [Staphylococcus epidermidis VCU121] Length = 259 Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 24/171 (14%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKI 75 + N + G DE G G GP+ V A + +++ G++DSKK++ K EL E++ Sbjct: 88 KYNQYNCIGSDEAGSGDYFGPLTVCAAYVTKDHVKILKELGVDDSKKLTDAKIVELAEQL 147 Query: 76 TS---SAIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGRS- 124 + +++++ + + + + + A A+ N+ +ID + Sbjct: 148 VTFIPHSLLTLDNVKYNERQRAGWSQVKMKAVLHNQAIANVVQKIDAPSLDYIVIDQFAE 207 Query: 125 ---------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 P + KG+S SL+IAAASII++ + M K Sbjct: 208 RGVYQRYALSDLPFPNKTKFETKGESKSLAIAAASIISRYAFVKHMDQMSK 258 >gi|311031392|ref|ZP_07709482.1| ribonuclease HIII [Bacillus sp. m3-13] Length = 318 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 31/199 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G GP+ V A + G+ DSK ++ +K + + I Sbjct: 104 VIGSDEVGTGDYFGPITVCAAYVKKEQMAMLKELGVQDSKALNDEKIVRIAKAILPHVPY 163 Query: 82 SISSASHQYIDKHNIH-------KATL--DAIYHAVENLQV-IPRSALIDGRS---IPED 128 S+ ++ ++ KA L A+ H ++ + P + LID + I Sbjct: 164 SLLVLHNEKYNELQQSGMSQGKIKALLHNKALQHVLDKIAPEKPDAILIDQFAESGIYYR 223 Query: 129 LPCQAFAVI--------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 Q ++ K + + LS+AAASIIA+ + + M + G G Sbjct: 224 HVAQQKNIVRENVYFHTKAEGLHLSVAAASIIARYSFLKEMDKLSELA---GITIPKGAG 280 Query: 181 TAKHQQV---IKEKGPSCI 196 + I++ G S + Sbjct: 281 SKVDAAAARVIEKHGESFL 299 >gi|261418289|ref|YP_003251971.1| ribonuclease HIII [Geobacillus sp. Y412MC61] gi|319767751|ref|YP_004133252.1| ribonuclease HIII [Geobacillus sp. Y412MC52] gi|261374746|gb|ACX77489.1| ribonuclease HIII [Geobacillus sp. Y412MC61] gi|317112617|gb|ADU95109.1| ribonuclease HIII [Geobacillus sp. Y412MC52] Length = 311 Score = 77.4 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 25/164 (15%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS 82 G DEVG G GP+VVAA +D ++I G+ DSK+++ + + + I +A + Sbjct: 96 IGSDEVGTGDYFGPIVVAAAYVDRSHIAKIAALGVKDSKQLNDEAIKRIAPAIMETAPYA 155 Query: 83 ISSASHQYIDKHNIH-----KATLDAIYHAVENL-----QVIPRSALIDGR--------- 123 ++ + ++ K + L + P + +ID Sbjct: 156 VTVLDNAEYNRWQRSGMPQTKMKALLHNRTLAKLVDAIAPIEPEAIIIDEFLKRDSYFRY 215 Query: 124 --SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165 + + + K +S+ +S+AAASIIA+ M Sbjct: 216 LSDEDRIIRERVHCLPKAESVHVSVAAASIIARYVFLDEMERLS 259 >gi|293401505|ref|ZP_06645648.1| ribonuclease HIII [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305143|gb|EFE46389.1| ribonuclease HIII [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 300 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 75/215 (34%), Gaps = 37/215 (17%) Query: 3 CNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGIN 58 + P+ PH E +P G DEVG G GP+ V + ++P GI Sbjct: 75 PSDQPQNPHTEW---------YPQCGSDEVGTGDYFGPITVCTTYVKKEDVPFLRELGIQ 125 Query: 59 DSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATL--------DAIYHAVEN 110 DSK ++ ++ EL + S+ + + + + A H Sbjct: 126 DSKAVTDERIRELGPILCERLTYSLLVLDNAKYNAIHPQYNMVAIKSRLHNQAYVHLRRK 185 Query: 111 LQVIPRSALIDGR----------SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160 L +P +ID E++ K ++ LS+AA SIIA+ Sbjct: 186 LGSLPSLCIIDQFVQAKSYYRYLHDVEEVVHTIHFETKAENKYLSVAAGSIIARYA---F 242 Query: 161 MRIAHKKYPDYGFDSHVGYPTA---KHQQVIKEKG 192 ++ Y F G + + +K+ G Sbjct: 243 LQAFDAMCQHYEFPFVKGAGSKVDQAIRAFVKQYG 277 >gi|223043745|ref|ZP_03613788.1| ribonuclease hiii [Staphylococcus capitis SK14] gi|222442842|gb|EEE48944.1| ribonuclease hiii [Staphylococcus capitis SK14] Length = 310 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 24/172 (13%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKI 75 + N + G DE G G GP+ V A + N G++DSKK++ K EL E++ Sbjct: 87 QYNKYNCIGSDEAGSGDYFGPLTVCAAYVSEKNAQVLKTLGVDDSKKLTDDKIVELAEQL 146 Query: 76 TS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQVIP-----RSALIDGRSI 125 + +++++++ + K + + A+ H A++N+ +ID + Sbjct: 147 ITFIPHSLLTLNNVKYNERQKMGWSQVKMKAVLHNEAIKNVVQKIDVDHLDYIVIDQFAK 206 Query: 126 PE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 E P + KG+S SL+IAAASII++ + M ++ Sbjct: 207 REVYQHYALSELPFPKKTQFETKGESKSLAIAAASIISRYAFVKHMNQITQQ 258 >gi|160914268|ref|ZP_02076489.1| hypothetical protein EUBDOL_00278 [Eubacterium dolichum DSM 3991] gi|158433895|gb|EDP12184.1| hypothetical protein EUBDOL_00278 [Eubacterium dolichum DSM 3991] Length = 288 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 65/182 (35%), Gaps = 25/182 (13%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-- 77 +P G DEVG G GPVVV A + ++ I DSK I L + Sbjct: 77 YPQCGSDEVGTGDYFGPVVVCASFVKEEDVSDLKKLNIQDSKAIDDTTIRTLAPTLIKQL 136 Query: 78 -SAIISISSASHQYIDKHNIHKATL-----DAIYHAVENLQVIPRSALIDGR-------- 123 +++ + +A + I N A A H L +P ++D Sbjct: 137 PHSLLILDNAKYNQIHATNNMVAMKAKLHNQAYVHLKHKLGSLPSFCVVDQFVQAASYYR 196 Query: 124 --SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + +++ K ++ L++A ASIIA+ ++ Y F G + Sbjct: 197 YIQMEKEIVRNLHFETKAENKYLAVACASIIARYA---FLKTFDAMEKHYDFHFLKGAGS 253 Query: 182 AK 183 Sbjct: 254 KV 255 >gi|50291445|ref|XP_448155.1| hypothetical protein [Candida glabrata CBS 138] gi|49527466|emb|CAG61106.1| unnamed protein product [Candida glabrata] Length = 307 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 93/245 (37%), Gaps = 45/245 (18%) Query: 4 NSIPERPHF-ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN------IPFG 56 NS+ + ++ E+ V + G+DE GRG + GP+V + Sbjct: 19 NSLKTKTYYSEIPKSVIANESPVILGVDEAGRGPVMGPMVYGISYCTKEYQDKVLIPKYT 78 Query: 57 INDSKKISHKKREELYEKITSSAIISISSA------------------SHQYIDKHNIHK 98 +DSKK++ R L+ K+ + I + A S Y H Sbjct: 79 FDDSKKLTDPVRRMLFSKMYAGEIDQVGYATTAITPYDISTGMSRYPPSRNYNLNEQAHD 138 Query: 99 ATLDAIYHAVENLQVIPRSALIDGRSIP--------EDLPCQAFAVI-KGDSISLSIAAA 149 T+ A+ V + V +D P + P F V K DS+ ++ A Sbjct: 139 VTM-ALIQGVIDRGVSIDHVYVDTVGPPASYQRKLEDRFPSIKFTVAKKADSLYCVVSVA 197 Query: 150 SIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIK-----EKG-PSCIHRLTFR 202 S++AKVTRD L+ + PD GYP+ K +K G P I R +++ Sbjct: 198 SVVAKVTRDLLIESLRRT-PD--EIMGSGYPSDPKTVAWLKGNQKPLLGWPIEIVRFSWQ 254 Query: 203 PLRNL 207 + L Sbjct: 255 TCQTL 259 >gi|239636364|ref|ZP_04677366.1| ribonuclease hiii [Staphylococcus warneri L37603] gi|239597719|gb|EEQ80214.1| ribonuclease hiii [Staphylococcus warneri L37603] Length = 309 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 24/171 (14%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKI 75 + N + G DE G G GP+ V A + +++ G++DSKK++ K EL E++ Sbjct: 86 KYNQYNCIGSDEAGSGDYFGPLTVCAAYVTKDHVKILKELGVDDSKKLTDAKIVELAEQL 145 Query: 76 TS---SAIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGRS- 124 + +++++ + + + + + A A+ N+ +ID + Sbjct: 146 VTFIPHSLLTLDNVKYNERQRAGWSQVKMKAVLHNQAIANVVQKIDTHALDYIVIDQFAE 205 Query: 125 ---------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 P + KG+S SL+IAAASII++ + M K Sbjct: 206 RGVYQRYALSDLPFPNKTKFETKGESKSLAIAAASIISRYAFVKHMDQMSK 256 >gi|331244484|ref|XP_003334882.1| ribonuclease HI large subunit [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309313872|gb|EFP90463.1| ribonuclease HI large subunit [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 143 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 6/76 (7%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGIND 59 S +R E +++ W + GIDE GRG + GP+V A + G D Sbjct: 32 STSDRKDITEEEEQLKRDNW-IMGIDEAGRGPVLGPMVYGAAFCTQAFAEDKLLDLGFAD 90 Query: 60 SKKISHKKREELYEKI 75 SK ++H++REEL E I Sbjct: 91 SKTLTHRRREELLEMI 106 >gi|323440689|gb|EGA98399.1| ribonuclease HIII [Staphylococcus aureus O11] Length = 318 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 89/220 (40%), Gaps = 31/220 (14%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 92 LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150 Query: 70 ELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSAL 119 EL E++ + +++++ + + + + A+ H A++N+ + Sbjct: 151 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIV 210 Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 ID + E LP + KG+S SL+IA ASII++ M K Sbjct: 211 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK--- 267 Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPSCIHRLTFRPLRN 206 + G IK+ G S + ++ + +N Sbjct: 268 NINMTIPKGAGAKVDVIAAKIIKKYGISRLDTISKKNFKN 307 >gi|161777620|ref|YP_416488.2| ribonuclease HIII [Staphylococcus aureus RF122] Length = 312 Score = 76.3 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 31/210 (14%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 86 LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 144 Query: 70 ELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSAL 119 EL E++ + +++++ + + + + A+ H AV+N+ + Sbjct: 145 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAVKNVLEKIDSSQLDYIV 204 Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 ID + E LP + KG+S SL+IA ASII++ M K Sbjct: 205 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK--- 261 Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPSCI 196 + G IK+ G S + Sbjct: 262 NINMTIPKGAGAKVDVIAAKIIKKYGISRL 291 >gi|82656278|emb|CAI80692.1| probable ribonuclease HIII [Staphylococcus aureus RF122] Length = 318 Score = 76.3 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 31/210 (14%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 92 LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150 Query: 70 ELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSAL 119 EL E++ + +++++ + + + + A+ H AV+N+ + Sbjct: 151 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAVKNVLEKIDSSQLDYIV 210 Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 ID + E LP + KG+S SL+IA ASII++ M K Sbjct: 211 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK--- 267 Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPSCI 196 + G IK+ G S + Sbjct: 268 NINMTIPKGAGAKVDVIAAKIIKKYGISRL 297 >gi|289551055|ref|YP_003471959.1| Ribonuclease HIII [Staphylococcus lugdunensis HKU09-01] gi|289180587|gb|ADC87832.1| Ribonuclease HIII [Staphylococcus lugdunensis HKU09-01] Length = 310 Score = 76.3 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 24/165 (14%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---SA 79 G DE G G GP+ V A + +++ G++DSKK++ K +L E++ + + Sbjct: 94 IGSDEAGSGDYFGPLTVCAAYVTQSHVAILKTLGVDDSKKLTDTKIIDLAEQLVTFIPHS 153 Query: 80 IISISSASHQYIDKHNIHKATLDAIYH--AVENL--QVIPR---SALIDGRSIPE----- 127 ++++ + + + + A+ H A++N+ ++ P +ID + E Sbjct: 154 LLTLDNIKYNERQALGWSQVKMKAVLHNEAIKNVTQKIHPDNIDYIVIDQFAQREVYQHY 213 Query: 128 -----DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 P + KG+S SL+IAAASII++ + M +K Sbjct: 214 ALSALPFPEKTKFETKGESKSLAIAAASIISRYAFVKYMDQLARK 258 >gi|241154557|ref|XP_002407329.1| ribonuclease HI large subunit, putative [Ixodes scapularis] gi|215494090|gb|EEC03731.1| ribonuclease HI large subunit, putative [Ixodes scapularis] Length = 306 Score = 76.3 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 7/115 (6%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI 75 K+ + G+DE GRG + GP+V G DSK ++ +KREEL + Sbjct: 24 AKSYPCMLGVDEAGRGPVLGPMVYGIAYCPVEFEEDLKRLGFADSKTLTEEKREELVGVM 83 Query: 76 TSSAI---ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + + S I H ++ + + ++ + + AL DG + E Sbjct: 84 EQRSESLGWMVEVISPTVICNHMLNMSKYSLNAISHDSAIGLIKQALDDGVCVTE 138 >gi|282910715|ref|ZP_06318518.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus WBG10049] gi|295427627|ref|ZP_06820259.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591419|ref|ZP_06950057.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MN8] gi|282325320|gb|EFB55629.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus WBG10049] gi|295127985|gb|EFG57619.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576305|gb|EFH95021.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MN8] gi|312438484|gb|ADQ77555.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TCH60] Length = 329 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 31/211 (14%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR 68 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 102 SLEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKI 160 Query: 69 EELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSA 118 EL E++ + +++++ + + + + A+ H A++N+ Sbjct: 161 VELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYI 220 Query: 119 LIDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 +ID + E LP + KG+S SL+IA ASII++ M K Sbjct: 221 VIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFITYMDQISK-- 278 Query: 169 PDYGFDSHVGYPTAKHQQV---IKEKGPSCI 196 + G IK G S + Sbjct: 279 -NINMTIPKGAGAKVDVIAAKIIKNYGISRL 308 >gi|255718283|ref|XP_002555422.1| KLTH0G08976p [Lachancea thermotolerans] gi|238936806|emb|CAR24985.1| KLTH0G08976p [Lachancea thermotolerans] Length = 342 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 85/234 (36%), Gaps = 42/234 (17%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN------DSKKISHK 66 E+ +R+ + G+DE GRG + GP+V + DSKK++ Sbjct: 68 EVPQQIRDSGCAVILGVDEAGRGPVLGPMVYGISYCTREYQDEVLKKRYAFDDSKKLTDP 127 Query: 67 KREELYEKI----TSSAIISISSASHQYI----------DKHNIHKATLD---AIYHAVE 109 R +L++++ + + S I +N+++ D A+ V Sbjct: 128 VRRDLFQRMYTGEIDQVGYATTCISACDISSGMLRFPPEKNYNLNEQAHDVTIALIRGVL 187 Query: 110 NLQVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRL 160 V +D P + + K DS+ ++ AS++AKVTRD L Sbjct: 188 ERGVAVEHVYVDTVGPPATYQRKLEGLFPSIKFTVAKKADSLFCVVSVASVVAKVTRDVL 247 Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH-------RLTFRPLRNL 207 + + + PD GYP+ + + R +++ + L Sbjct: 248 IELLRAR-PD--EVLGSGYPSDAKTTAWLRSNRTALFGWPLQTVRFSWQTSQTL 298 >gi|323346904|gb|EGA81183.1| Rnh201p [Saccharomyces cerevisiae Lalvin QA23] Length = 307 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 89/235 (37%), Gaps = 47/235 (20%) Query: 16 AMVREKNMWPVA-GIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKR 68 + + E+N P+ GIDE GRG + GP+V A + +DSKK++ R Sbjct: 24 SALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83 Query: 69 EELYEKI---------TSSAIISISSAS-----------HQYIDKHNIHKATLDAIYHAV 108 L+ KI A I+ Y H T+ A+ V Sbjct: 84 RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTM-ALIDGV 142 Query: 109 ENLQVIPRSALIDGRSIP--------EDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDR 159 V +D P + P F V K DS+ ++ AS++AKVTRD Sbjct: 143 IKQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRDI 202 Query: 160 LMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK------GPSCIHRLTFRPLRNL 207 L+ K+ PD GYP+ K +K P+ + R +++ + L Sbjct: 203 LVESL-KRDPD--EILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTL 254 >gi|315658551|ref|ZP_07911423.1| ribonuclease HIII [Staphylococcus lugdunensis M23590] gi|315496880|gb|EFU85203.1| ribonuclease HIII [Staphylococcus lugdunensis M23590] Length = 310 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 24/165 (14%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---SA 79 G DE G G GP+ V A + +++ G++DSKK++ K +L E++ + + Sbjct: 94 IGSDEAGSGDYFGPLTVCAAYVTQSHVAILKTLGVDDSKKLTDTKIIDLAEQLVTFIPHS 153 Query: 80 IISISSASHQYIDKHNIHKATLDAIYH--AVENL--QVIPR---SALIDGRSIPE----- 127 ++++ + + + + A+ H A++N+ ++ P +ID + E Sbjct: 154 LLTLDNIKYNERQALGWSQVKMKAVLHNEAIKNVTQKIHPDNIDYIVIDQFAQREVYQHY 213 Query: 128 -----DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 P + KG+S SL+IAAASII++ + M +K Sbjct: 214 ALSALPFPEKTKFETKGESKSLAIAAASIISRYAFVKYMDQLARK 258 >gi|291533380|emb|CBL06493.1| Ribonuclease HII [Megamonas hypermegale ART12/1] Length = 101 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 21/42 (50%), Positives = 27/42 (64%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI 53 + E R +AG+DEVGRG LAGPVVVA++IL N + Sbjct: 56 YTFENECRANGYKLIAGVDEVGRGPLAGPVVVASVILPENFL 97 >gi|151944462|gb|EDN62740.1| Rnh2A [Saccharomyces cerevisiae YJM789] gi|259149289|emb|CAY82531.1| Rnh201p [Saccharomyces cerevisiae EC1118] Length = 307 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 89/235 (37%), Gaps = 47/235 (20%) Query: 16 AMVREKNMWPVA-GIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKR 68 + + E+N P+ GIDE GRG + GP+V A + +DSKK++ R Sbjct: 24 SALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83 Query: 69 EELYEKI---------TSSAIISISSAS-----------HQYIDKHNIHKATLDAIYHAV 108 L+ KI A I+ Y H T+ A+ V Sbjct: 84 RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTM-ALIDGV 142 Query: 109 ENLQVIPRSALIDGRSIP--------EDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDR 159 V +D P + P F V K DS+ ++ AS++AKVTRD Sbjct: 143 IKQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRDI 202 Query: 160 LMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK------GPSCIHRLTFRPLRNL 207 L+ K+ PD GYP+ K +K P+ + R +++ + L Sbjct: 203 LVESL-KRDPD--EILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTL 254 >gi|323303245|gb|EGA57043.1| Rnh201p [Saccharomyces cerevisiae FostersB] Length = 307 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 57/234 (24%), Positives = 89/234 (38%), Gaps = 46/234 (19%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKRE 69 A++ +K+ + GIDE GRG + GP+V A + +DSKK++ R Sbjct: 25 ALLEQKDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIRR 84 Query: 70 ELYEKI---------TSSAIISISSAS-----------HQYIDKHNIHKATLDAIYHAVE 109 L+ KI A I+ Y H T+ A+ V Sbjct: 85 MLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTM-ALIDGVI 143 Query: 110 NLQVIPRSALIDGRSIP--------EDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRL 160 V +D P + P F V K DS+ ++ AS++AKVTRD L Sbjct: 144 KQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRDIL 203 Query: 161 MRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK------GPSCIHRLTFRPLRNL 207 + K+ PD GYP+ K +K P+ + R +++ + L Sbjct: 204 VESL-KRDPD--EILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTL 254 >gi|6324257|ref|NP_014327.1| Rnh201p [Saccharomyces cerevisiae S288c] gi|1730743|sp|P53942|RNH2A_YEAST RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=RNase H(201); AltName: Full=RNase H(35); AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|791114|emb|CAA60188.1| unknown [Saccharomyces cerevisiae] gi|1301957|emb|CAA95946.1| unnamed protein product [Saccharomyces cerevisiae] gi|190409061|gb|EDV12326.1| ribonuclease HI 35 large subunit [Saccharomyces cerevisiae RM11-1a] gi|207341690|gb|EDZ69676.1| YNL072Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi|285814579|tpg|DAA10473.1| TPA: Rnh201p [Saccharomyces cerevisiae S288c] gi|323331967|gb|EGA73379.1| Rnh201p [Saccharomyces cerevisiae AWRI796] gi|323352575|gb|EGA85074.1| Rnh201p [Saccharomyces cerevisiae VL3] Length = 307 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 89/235 (37%), Gaps = 47/235 (20%) Query: 16 AMVREKNMWPVA-GIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKR 68 + + E+N P+ GIDE GRG + GP+V A + +DSKK++ R Sbjct: 24 SALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83 Query: 69 EELYEKI---------TSSAIISISSAS-----------HQYIDKHNIHKATLDAIYHAV 108 L+ KI A I+ Y H T+ A+ V Sbjct: 84 RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTM-ALIDGV 142 Query: 109 ENLQVIPRSALIDGRSIP--------EDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDR 159 V +D P + P F V K DS+ ++ AS++AKVTRD Sbjct: 143 IKQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRDI 202 Query: 160 LMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK------GPSCIHRLTFRPLRNL 207 L+ K+ PD GYP+ K +K P+ + R +++ + L Sbjct: 203 LVESL-KRDPD--EILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTL 254 >gi|323335818|gb|EGA77097.1| Rnh201p [Saccharomyces cerevisiae Vin13] Length = 307 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 89/235 (37%), Gaps = 47/235 (20%) Query: 16 AMVREKNMWPVA-GIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKR 68 + + E+N P+ GIDE GRG + GP+V A + +DSKK++ R Sbjct: 24 SALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83 Query: 69 EELYEKI---------TSSAIISISSAS-----------HQYIDKHNIHKATLDAIYHAV 108 L+ KI A I+ Y H T+ A+ V Sbjct: 84 RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTM-ALIDGV 142 Query: 109 ENLQVIPRSALIDGRSIP--------EDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDR 159 V +D P + P F V K DS+ ++ AS++AKVTRD Sbjct: 143 IKQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRDI 202 Query: 160 LMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK------GPSCIHRLTFRPLRNL 207 L+ K+ PD GYP+ K +K P+ + R +++ + L Sbjct: 203 LVESL-KRDPD--EILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTL 254 >gi|256274456|gb|EEU09358.1| Rnh201p [Saccharomyces cerevisiae JAY291] Length = 307 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 57/234 (24%), Positives = 89/234 (38%), Gaps = 46/234 (19%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKRE 69 A++ +K+ + GIDE GRG + GP+V A + +DSKK++ R Sbjct: 25 ALLEQKDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIRR 84 Query: 70 ELYEKI---------TSSAIISISSAS-----------HQYIDKHNIHKATLDAIYHAVE 109 L+ KI A I+ Y H T+ A+ V Sbjct: 85 MLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTM-ALIDGVI 143 Query: 110 NLQVIPRSALIDGRSIP--------EDLPCQAFAVI-KGDSISLSIAAASIIAKVTRDRL 160 V +D P + P F V K DS+ ++ AS++AKVTRD L Sbjct: 144 KQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRDIL 203 Query: 161 MRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK------GPSCIHRLTFRPLRNL 207 + K+ PD GYP+ K +K P+ + R +++ + L Sbjct: 204 VESL-KRDPD--EILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTL 254 >gi|293553123|ref|ZP_06673761.1| ribonuclease hiii [Enterococcus faecium E1039] gi|291602714|gb|EFF32928.1| ribonuclease hiii [Enterococcus faecium E1039] Length = 305 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 71/181 (39%), Gaps = 27/181 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G+ GP+ V A + + + G+ DSK+++ + +L + + + Sbjct: 91 VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELTDSQIIQLADILKKTIPY 150 Query: 82 SISSASHQYIDKH-------NIHKATLDAIYHAVEN--LQVIPRSALIDGRSIPED---- 128 + S + ++ + A + H + P + LID + + Sbjct: 151 KLLVLSPEKYNEIQPKYNAVRMKVALHNQTIHLLLKKIAPEKPEAILIDQFTPEANFKKY 210 Query: 129 -------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 L + + V KG+ L++AAASII +R + K + G G T Sbjct: 211 ARLEKNQLQEKLYFVTKGEQYHLAVAAASII---SRASFLEELDKASAEAGITLPSGAGT 267 Query: 182 A 182 Sbjct: 268 K 268 >gi|323442368|gb|EGA99997.1| ribonuclease HIII [Staphylococcus aureus O46] Length = 318 Score = 75.9 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 31/210 (14%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 92 LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150 Query: 70 ELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSAL 119 EL E++ + +++++ + + + + A+ H A++N+ + Sbjct: 151 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIV 210 Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 ID + E LP + KG+S SL+IA ASII++ M K Sbjct: 211 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK--- 267 Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPSCI 196 + G IK+ G S + Sbjct: 268 NINMTIPKGAGAKVDVIAAKIIKKYGISRL 297 >gi|302332748|gb|ADL22941.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus JKD6159] Length = 312 Score = 75.9 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 31/210 (14%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 86 LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 144 Query: 70 ELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSAL 119 EL E++ + +++++ + + + + A+ H A++N+ + Sbjct: 145 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLKKIDSSQLDYIV 204 Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 ID + E LP + KG+S SL+IA ASII++ M K Sbjct: 205 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK--- 261 Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPSCI 196 + G IK+ G S + Sbjct: 262 NINMTIPKGAGAKVDVIAAKIIKKYGISRL 291 >gi|298694427|gb|ADI97649.1| probable ribonuclease HIII [Staphylococcus aureus subsp. aureus ED133] Length = 318 Score = 75.9 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 83/210 (39%), Gaps = 31/210 (14%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 E + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 92 FEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150 Query: 70 ELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSAL 119 EL E++ + +++++ + + + + A+ H A++N+ + Sbjct: 151 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIV 210 Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 ID + E LP + KG+S SL+IA ASII++ M K Sbjct: 211 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK--- 267 Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPSCI 196 + G IK+ G S + Sbjct: 268 NINMTIPKGAGAKVDVIAAKIIKKYGISRL 297 >gi|313230305|emb|CBY08009.1| unnamed protein product [Oikopleura dioica] Length = 195 Score = 75.9 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 43/181 (23%), Positives = 64/181 (35%), Gaps = 30/181 (16%) Query: 41 VVVAAIIL-----DPNNIPFGINDSKKISHKKREELYEKITSSAIISI--SSASHQYIDK 93 +V AA G NDSK++ RE + + I S I YI K Sbjct: 1 MVYAAAFCAITEHQKVRDECGANDSKQLEEVDRERMLKSIDKSGWIGYTGVVLPPAYISK 60 Query: 94 HNI-----------HKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI----- 137 + H + I A++ + +S +D PE + Sbjct: 61 SMLRRIKYNLNEMSHDTAISMIRRAIDYHGINVKSVFVDTVGKPEKYQDKLLRYFPQLSI 120 Query: 138 ----KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG--FDSHVGYP-TAKHQQVIKE 190 K D+ + AASIIAKVTRD+L+ P + GYP K + I++ Sbjct: 121 KVESKADATYPIVGAASIIAKVTRDKLVHNWDHVEPSVNKSIEVGSGYPGDPKTKNWIRQ 180 Query: 191 K 191 Sbjct: 181 H 181 >gi|49483303|ref|YP_040527.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MRSA252] gi|257425191|ref|ZP_05601617.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 55/2053] gi|257427854|ref|ZP_05604252.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 65-1322] gi|257430489|ref|ZP_05606871.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 68-397] gi|257433251|ref|ZP_05609609.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus E1410] gi|257436090|ref|ZP_05612137.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M876] gi|282903688|ref|ZP_06311576.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C160] gi|282905457|ref|ZP_06313312.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus Btn1260] gi|282913915|ref|ZP_06321702.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M899] gi|282918838|ref|ZP_06326573.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C427] gi|282923960|ref|ZP_06331636.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C101] gi|283957883|ref|ZP_06375334.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus A017934/97] gi|293500950|ref|ZP_06666801.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 58-424] gi|293509907|ref|ZP_06668616.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M809] gi|293526494|ref|ZP_06671179.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M1015] gi|73917851|sp|Q6GHU5|RNH3_STAAR RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|49241432|emb|CAG40116.1| putative ribonuclease [Staphylococcus aureus subsp. aureus MRSA252] gi|257272167|gb|EEV04299.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 55/2053] gi|257274695|gb|EEV06182.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 65-1322] gi|257278617|gb|EEV09236.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 68-397] gi|257281344|gb|EEV11481.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus E1410] gi|257284372|gb|EEV14492.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M876] gi|282313932|gb|EFB44324.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C101] gi|282316648|gb|EFB47022.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C427] gi|282321983|gb|EFB52307.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M899] gi|282330749|gb|EFB60263.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus Btn1260] gi|282595306|gb|EFC00270.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C160] gi|283790032|gb|EFC28849.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus A017934/97] gi|290920566|gb|EFD97629.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M1015] gi|291095955|gb|EFE26216.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 58-424] gi|291467357|gb|EFF09874.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M809] gi|315193810|gb|EFU24205.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus CGS00] Length = 312 Score = 75.9 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 31/211 (14%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR 68 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 85 SLEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKI 143 Query: 69 EELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSA 118 EL E++ + +++++ + + + + A+ H A++N+ Sbjct: 144 VELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYI 203 Query: 119 LIDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 +ID + E LP + KG+S SL+IA ASII++ M K Sbjct: 204 VIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFITYMDQISK-- 261 Query: 169 PDYGFDSHVGYPTAKHQQV---IKEKGPSCI 196 + G IK G S + Sbjct: 262 -NINMTIPKGAGAKVDVIAAKIIKNYGISRL 291 >gi|295706825|ref|YP_003599900.1| ribonuclease HIII [Bacillus megaterium DSM 319] gi|294804484|gb|ADF41550.1| ribonuclease HIII [Bacillus megaterium DSM 319] Length = 304 Score = 75.9 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 31/199 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G GP+ V A + +P G+ DSK+++ K E+ +++ SS Sbjct: 89 VIGSDEVGTGDYFGPMTVVAAYVQKEQLPLLKELGVRDSKELTDAKIIEIAKQLVSSIPY 148 Query: 82 SISSASHQYID---KHNIHKATLDAIYH--AVENL-----QVIPRSALID---------- 121 S+ ++ + + + + + A+ H A+ N+ P + LID Sbjct: 149 SLLVLHNEKYNAFQEKGMSQGKMKALLHNKALSNVLKKLDPEKPDAILIDQFVEKNTYYK 208 Query: 122 -GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 E + F KG+S+ LS+AAASIIA+ + M + +K G G Sbjct: 209 HVVKEKEIIKENVFFSTKGESVHLSVAAASIIARYAFLKQMDLLTEK---TGMVIPRGAG 265 Query: 181 TAKHQQV---IKEKGPSCI 196 IK+ G + + Sbjct: 266 AQVDIAAAKIIKKHGVNAL 284 >gi|81428005|ref|YP_395004.1| ribonuclease HIII [Lactobacillus sakei subsp. sakei 23K] gi|78609646|emb|CAI54692.1| Ribonuclease HIII (RNase HIII) [Lactobacillus sakei subsp. sakei 23K] Length = 305 Score = 75.9 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 24/168 (14%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79 W V G DEVG G+ GP+ +AA+ + N+ G+ DSK ++ + +++ K+ + Sbjct: 90 WSVIGSDEVGNGSYFGPLTIAAVYVSQENLSFVRNLGVADSKTLTDAQIDQMAIKMMTKL 149 Query: 80 IISISSASHQYIDKHNIHKAT--LDAIYHAVENLQV-------IPRSALIDG-------- 122 I + Q ++ + + A+ H L+V P+ LID Sbjct: 150 PYHIVNIMPQKYNQVHEQMNIEKMKAVSHNFALLKVLKKIQPDQPQGILIDQFEPRATYY 209 Query: 123 ---RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + P L + K + L++AAASIIA+ + M K Sbjct: 210 RYLKDEPVVLRDNVYFTTKAEQFHLAVAAASIIARHQANLSMIELSKL 257 >gi|307103270|gb|EFN51532.1| hypothetical protein CHLNCDRAFT_140248 [Chlorella variabilis] Length = 259 Score = 75.5 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 69/197 (35%), Gaps = 38/197 (19%) Query: 41 VVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI---ISISSASHQYIDK 93 +V + G DSK ++ +KR+ L+ I + S +I Sbjct: 1 MVYGLAWAPISRRKDLKAMGFADSKTLTEEKRDHLFGVIQAEGGMLGYQADVLSAAFISG 60 Query: 94 HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV-IKGDSISLSIAAASII 152 + + + A E+ + + L G + + P F V K DS ++AASI+ Sbjct: 61 KMLGRERVSLNALAFESTCALIEAVLARGERLSQRFPGVQFVVEAKADSTYPIVSAASIV 120 Query: 153 AKVTRDRLMRI--------------------AHKKYPDYGFDSHVGYP----TAKHQQV- 187 AKVTRDR +R A +G GYP T + + Sbjct: 121 AKVTRDRTLRDFVLGEMAASLDGGSSSSDGCAAALSTQFG----SGYPADPQTKRWLEAS 176 Query: 188 IKE-KGPSCIHRLTFRP 203 I G + R ++ Sbjct: 177 INRVFGFPSLVRFSWST 193 >gi|47458958|ref|YP_015820.1| ribonuclease HII [Mycoplasma mobile 163K] gi|47458286|gb|AAT27609.1| ribonuclease HII [Mycoplasma mobile 163K] Length = 227 Score = 75.5 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 72/176 (40%), Gaps = 29/176 (16%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 N + G DE G G P+V A+ L+P NI I DSK ++ KK +E+ +++ Sbjct: 4 NEYVTIGSDETGVGDYLSPIVACAVFLNPENISKINKLDIKDSKLLTDKKIKEIAKELKK 63 Query: 78 SAIISISSAS-------HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 SI+ S +++ + H I + +E +ID S +++ Sbjct: 64 LVSHSINYFSQKGYNNLNKFFNAHEIKMFLHLKSINFLEQKHQNIDYVIIDAFSDEKNID 123 Query: 131 CQAFAVI------------------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 ++ K +S+SLS+A ASI+A+ M + KY Sbjct: 124 KYIEKLVNNKKFMLQNIKSEKKIIQKAESLSLSVACASILARNYLLEKMEEQNIKY 179 >gi|283470350|emb|CAQ49561.1| ribonuclease hiii [Staphylococcus aureus subsp. aureus ST398] Length = 318 Score = 75.5 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 84/211 (39%), Gaps = 31/211 (14%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR 68 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 91 SLEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKI 149 Query: 69 EELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSA 118 EL E++ + +++++ + + + + A+ H A++N+ Sbjct: 150 VELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYI 209 Query: 119 LIDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 +ID + E LP + KG+S SL+IA ASII++ M K Sbjct: 210 VIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK-- 267 Query: 169 PDYGFDSHVGYPTAKHQQV---IKEKGPSCI 196 + G IK+ G S + Sbjct: 268 -NINMTIPKGAGAKVDVIAAKIIKKYGLSRL 297 >gi|217964706|ref|YP_002350384.1| ribonuclease hiii [Listeria monocytogenes HCC23] gi|217333976|gb|ACK39770.1| ribonuclease hiii [Listeria monocytogenes HCC23] gi|307570733|emb|CAR83912.1| rnhC [Listeria monocytogenes L99] Length = 293 Score = 75.5 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 30/189 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78 V G DEVG G GP+ V A +D IP G+ DSK + + + EKI Sbjct: 78 VIGSDEVGTGDFFGPITVCAAYVDAEMIPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137 Query: 79 AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123 +++ + + + K +++ + A A+EN+ + P + LID Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLTPIKPEAILIDQFAEKNTYYR 197 Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 P + F K + + LS+AAASIIA R + ++ + G G Sbjct: 198 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDAMSKEVGIPLPKGAG 254 Query: 181 TAKHQQVIK 189 H + Sbjct: 255 --PHVDAVA 261 >gi|229543611|ref|ZP_04432671.1| ribonuclease HIII [Bacillus coagulans 36D1] gi|229328031|gb|EEN93706.1| ribonuclease HIII [Bacillus coagulans 36D1] Length = 311 Score = 75.1 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 45/199 (22%), Positives = 76/199 (38%), Gaps = 31/199 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 V G DEVG G GP+ V + ++ +P G+ DSK ++ + L +++ + Sbjct: 91 GELSVIGSDEVGTGDFFGPMTVVSCYVEKKQLPLLKELGVKDSKGLTDSQIAGLAKELLT 150 Query: 78 SAIISISSASHQYIDKHNIH-----KATLDAIYHAVEN-----LQVIPRSALIDGR---- 123 S+ ++ ++ K A+ N P + LID Sbjct: 151 FVPYSLLILPNEKYNRLQQSGMSQGKIKALLHNRALYNTAQKIAPAKPDAILIDQFAEAS 210 Query: 124 SIPEDLPCQAFAV-------IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + L + + KG+S+ L++AAASI+A+ R K+ GF Sbjct: 211 TYYRYLQNEKIVMRDGVYFSTKGESVHLAVAAASILARYAFVREFEKLSKEA---GFVLP 267 Query: 177 VGYPTAKHQQV---IKEKG 192 G + IKEKG Sbjct: 268 KGAGAQVDRAAARLIKEKG 286 >gi|154686997|ref|YP_001422158.1| ribonuclease HIII [Bacillus amyloliquefaciens FZB42] gi|166226670|sp|A7Z7F1|RNH3_BACA2 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|154352848|gb|ABS74927.1| RnhC [Bacillus amyloliquefaciens FZB42] Length = 313 Score = 75.1 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 24/168 (14%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79 V G DEVG G GP+ VA D + G+ DSK + + E+ + + + Sbjct: 94 MSVIGSDEVGTGDYFGPITVACAYADKTKLSLMKELGVKDSKDLKDPQIIEIAKLLIKTI 153 Query: 80 IISISSASHQYIDKHNIHKATL-----DAIYHAVENL-----QVIPRSALIDGRSIP--- 126 S+ ++ ++ + A+ NL V P + LID + P Sbjct: 154 PYSLLVLKNEKYNQMQEKGMSQGKMKALLHNQAISNLLRKMNGVKPEAILIDQFAEPGIY 213 Query: 127 -------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + + + F K +SI LS+AAASIIA+ + M ++ Sbjct: 214 FKHLSGRDIVKEKTFFSTKAESIHLSVAAASIIARYSFLIEMDKLSRE 261 >gi|251810588|ref|ZP_04825061.1| ribonuclease HIII [Staphylococcus epidermidis BCM-HMP0060] gi|282876412|ref|ZP_06285279.1| ribonuclease HIII [Staphylococcus epidermidis SK135] gi|251805748|gb|EES58405.1| ribonuclease HIII [Staphylococcus epidermidis BCM-HMP0060] gi|281295437|gb|EFA87964.1| ribonuclease HIII [Staphylococcus epidermidis SK135] Length = 308 Score = 75.1 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 28/171 (16%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS---SA 79 G DE G G GP+ V A + ++I G++DSKK+S K +L E++ + + Sbjct: 91 IGSDEAGSGDYFGPLTVCAAYVSQSHIKILKELGVDDSKKLSDTKIVDLAEQLITFIPHS 150 Query: 80 IISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSIPE----- 127 ++++ + + + + A+ H A++N+ Q +ID + E Sbjct: 151 LLTLDNVKYNERQSIGWSQVKMKAVLHNEAIKNVLQKIEQDQLDYIVIDQFAKREVYQHY 210 Query: 128 -----DLPCQAFAVIKGDSISLSIAAASIIAKVTR----DRLMRIAHKKYP 169 P + KG+S SL+IAAASII++ D + + H + P Sbjct: 211 ALSALPFPDKTKFETKGESKSLAIAAASIISRYAFVKHMDHISKKLHMEIP 261 >gi|242373372|ref|ZP_04818946.1| ribonuclease HIII [Staphylococcus epidermidis M23864:W1] gi|242348735|gb|EES40337.1| ribonuclease HIII [Staphylococcus epidermidis M23864:W1] Length = 311 Score = 75.1 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 80/194 (41%), Gaps = 30/194 (15%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS---SA 79 G DE G G GP+ V A + N G++DSKK++ K E+ E++ + + Sbjct: 95 IGSDEAGSGDYFGPLTVCAAYVSEKNAQVLKTLGVDDSKKLTDTKIVEIAEQLITFIPHS 154 Query: 80 IISISSASHQYIDKHNIHKATLDAIYH--AVENLQVIP-----RSALIDGRSIPE----- 127 ++++ + + K + + A+ H A++N+ +ID + E Sbjct: 155 LLTLDNVKYNERQKMGWSQVKMKAVLHNEAIKNVTQKIEIEDLDYIVIDQFAKREVYQHY 214 Query: 128 -----DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 P + KG+S SL+IAAASII++ + M + D G Sbjct: 215 ALSELPFPKKTKFETKGESKSLAIAAASIISRYAFVKHMDHITR---QINMDVPKGASNK 271 Query: 183 KHQ---QVIKEKGP 193 +VI++ G Sbjct: 272 VDLFAAKVIQKYGI 285 >gi|223936443|ref|ZP_03628355.1| ribonuclease HIII [bacterium Ellin514] gi|223894961|gb|EEF61410.1| ribonuclease HIII [bacterium Ellin514] Length = 329 Score = 75.1 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 81/200 (40%), Gaps = 33/200 (16%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKI 63 + E ++ + + P G+DE G+G GP+ VA + ++ + GI DSK I Sbjct: 76 QEAKLGYEEVLNPELLAPRLGVDESGKGDFFGPLCVAGVYVNESVVRAWKEAGIRDSKNI 135 Query: 64 -SHKKREELYEKITS-----SAIISISSASHQYIDKHNIHKATLDAIYHA--VENL---- 111 S KK EL E I + ++ I + ++ + TL A HA +ENL Sbjct: 136 SSDKKIRELAELIRETPGCVTTVVPIGNEAYNRLYAKMRSVNTLLAWGHARVIENLMGRQ 195 Query: 112 ---QVIPRSALIDGRSIPEDLPCQAFA----------VIKGDSISLSIAAASIIAKVTRD 158 + P A+ D + +D +A K + +++AAASI+A RD Sbjct: 196 QMMKPPPIRAISDQFAASKDTVAKALMNLGRQVELVQRHKAEE-DIAVAAASILA---RD 251 Query: 159 RLMRIAHKKYPDYGFDSHVG 178 + YG G Sbjct: 252 EFVSRLGTLEKQYGMGFPKG 271 >gi|253733626|ref|ZP_04867791.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TCH130] gi|253728326|gb|EES97055.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TCH130] Length = 318 Score = 75.1 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 31/210 (14%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 92 LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150 Query: 70 ELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSAL 119 EL E++ + +++++ + + + + A+ H A++N+ + Sbjct: 151 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIV 210 Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 ID + E LP + KG+S SL+IA ASII++ M K Sbjct: 211 IDQFAKREVYNHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK--- 267 Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPSCI 196 + G IK+ G S + Sbjct: 268 NINMTIPKGAGAKVDVIAAKIIKKYGLSRL 297 >gi|314938144|ref|ZP_07845449.1| ribonuclease HIII [Enterococcus faecium TX0133a04] gi|314943815|ref|ZP_07850550.1| ribonuclease HIII [Enterococcus faecium TX0133C] gi|314949774|ref|ZP_07853084.1| ribonuclease HIII [Enterococcus faecium TX0082] gi|314951182|ref|ZP_07854240.1| ribonuclease HIII [Enterococcus faecium TX0133A] gi|314994413|ref|ZP_07859697.1| ribonuclease HIII [Enterococcus faecium TX0133B] gi|314995609|ref|ZP_07860703.1| ribonuclease HIII [Enterococcus faecium TX0133a01] gi|313590197|gb|EFR69042.1| ribonuclease HIII [Enterococcus faecium TX0133a01] gi|313591185|gb|EFR70030.1| ribonuclease HIII [Enterococcus faecium TX0133B] gi|313596661|gb|EFR75506.1| ribonuclease HIII [Enterococcus faecium TX0133A] gi|313597539|gb|EFR76384.1| ribonuclease HIII [Enterococcus faecium TX0133C] gi|313642491|gb|EFS07071.1| ribonuclease HIII [Enterococcus faecium TX0133a04] gi|313643847|gb|EFS08427.1| ribonuclease HIII [Enterococcus faecium TX0082] Length = 313 Score = 75.1 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 27/181 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G+ GP+ V A + + + G+ DSK++ + +L + + + Sbjct: 99 VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKKTIPY 158 Query: 82 SISSASHQYID----KHNIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPED---- 128 + S + + K+N + + A+ L P + LID + + Sbjct: 159 KLLVLSPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIEPEKPEAILIDQFTPEANFKKY 218 Query: 129 -------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 L + + V KG+ L++AAASII +R + HK + G G T Sbjct: 219 ARLEKNQLQEKLYFVTKGEQYHLAVAAASII---SRASFLEELHKASAEAGITLPSGAGT 275 Query: 182 A 182 Sbjct: 276 K 276 >gi|172058184|ref|YP_001814644.1| ribonuclease HIII [Exiguobacterium sibiricum 255-15] gi|229564305|sp|B1YJY9|RNH3_EXIS2 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|171990705|gb|ACB61627.1| ribonuclease HIII [Exiguobacterium sibiricum 255-15] Length = 306 Score = 75.1 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 41/199 (20%), Positives = 70/199 (35%), Gaps = 29/199 (14%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79 W V G DEVG+G GP+VV A +D I G+ DSK +S + + + + Sbjct: 87 WSVVGSDEVGKGDFFGPLVVVAAYVDKTKIELVRELGVRDSKNVSDPEIRTIARDLHAVI 146 Query: 80 IISISSASHQYIDKHNIHKA----TLDAIYHAVEN----LQVIPRSALIDGRSIP----- 126 + ++ T A+ L P++ LID + Sbjct: 147 PYEYRILHNPDYNRMQRTMTQGKMTALLHNSALNGLLTRLDEPPQAILIDQFAEKAVYYK 206 Query: 127 ------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + + K + I +++AAASI+A+ + M + G + G Sbjct: 207 HLSGETNQVKDNVYFSTKAEGIHVAVAAASILARAIFLKEMDQLSR---QTGTEIPKGAG 263 Query: 181 TAKHQQV---IKEKGPSCI 196 Q + GP + Sbjct: 264 AKVDQVAASLLLRYGPERL 282 >gi|297620990|ref|YP_003709127.1| Ribonuclease HIII [Waddlia chondrophila WSU 86-1044] gi|297376291|gb|ADI38121.1| Ribonuclease HIII [Waddlia chondrophila WSU 86-1044] Length = 303 Score = 75.1 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 25/167 (14%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAIIS 82 GIDE G+G GP+ +A + + + I G+ DSK ++ K +L ++I ++ Sbjct: 96 IGIDEAGKGDFFGPLCIAGVYAEGDAISELKSAGVRDSKNMTEKNVFKLAKEIRKRCEVT 155 Query: 83 ISSASHQYIDKH-----NIHKATLDAIYHAVENL--QVIPRSALID---------GRSIP 126 + + ++ N++ A+ENL + ++ +ID G Sbjct: 156 VVRMNPLKYNELYGKFKNLNHLLAWGHATAIENLVSKTGCKNVIIDQFAAEQVVIGALKK 215 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTR----DRLMRIAHKKYP 169 + L +G+ L +AAASI+A+ D+L + P Sbjct: 216 KKLEVNLTQRHRGEE-DLVVAAASILAREAFVTELDKLSKQWEMTLP 261 >gi|269940634|emb|CBI49013.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TW20] Length = 318 Score = 75.1 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 82/210 (39%), Gaps = 31/210 (14%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 92 LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150 Query: 70 ELYEKITS---SAIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSAL 119 EL E++ + +++++ + + + + A A++N+ + Sbjct: 151 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAALHNEAIKNVLKKIDSSQLDYIV 210 Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 ID + E LP + KG+S SL+IA ASII++ M K Sbjct: 211 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK--- 267 Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPSCI 196 + G IK+ G S + Sbjct: 268 NINMTIPKGAGAKVDVIAAKIIKKYGLSRL 297 >gi|161509314|ref|YP_001574973.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|282919917|ref|ZP_06327646.1| ribonuclease HIII [Staphylococcus aureus A9765] gi|304381303|ref|ZP_07363956.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|160368123|gb|ABX29094.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|282594633|gb|EFB99617.1| ribonuclease HIII [Staphylococcus aureus A9765] gi|304340286|gb|EFM06227.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|320141045|gb|EFW32892.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MRSA131] gi|320143102|gb|EFW34892.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MRSA177] gi|329313808|gb|AEB88221.1| Ribonuclease HIII [Staphylococcus aureus subsp. aureus T0131] gi|329728888|gb|EGG65309.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 21193] gi|329730784|gb|EGG67163.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 21189] Length = 318 Score = 75.1 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 82/210 (39%), Gaps = 31/210 (14%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 92 LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150 Query: 70 ELYEKITS---SAIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSAL 119 EL E++ + +++++ + + + + A A++N+ + Sbjct: 151 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAALHNEAIKNVLEKIDSSQLDYIV 210 Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 ID + E LP + KG+S SL+IA ASII++ M K Sbjct: 211 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK--- 267 Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPSCI 196 + G IK+ G S + Sbjct: 268 NINMTIPKGAGAKVDVIAAKIIKKYGLSRL 297 >gi|57651749|ref|YP_186013.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus COL] gi|87161110|ref|YP_493737.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194841|ref|YP_499639.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221263|ref|YP_001332085.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus str. Newman] gi|221140462|ref|ZP_03564955.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258451837|ref|ZP_05699858.1| ribonuclease HIII [Staphylococcus aureus A5948] gi|262051696|ref|ZP_06023915.1| ribonuclease HIII [Staphylococcus aureus 930918-3] gi|284024065|ref|ZP_06378463.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 132] gi|294848130|ref|ZP_06788877.1| ribonuclease HIII [Staphylococcus aureus A9754] gi|73917848|sp|Q5HGU4|RNH3_STAAC RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|122539781|sp|Q2FZD7|RNH3_STAA8 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|123486345|sp|Q2FHU1|RNH3_STAA3 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|172048827|sp|A6QG41|RNH3_STAAE RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|57285935|gb|AAW38029.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus COL] gi|87127084|gb|ABD21598.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202399|gb|ABD30209.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374063|dbj|BAF67323.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus str. Newman] gi|257860445|gb|EEV83272.1| ribonuclease HIII [Staphylococcus aureus A5948] gi|259160431|gb|EEW45456.1| ribonuclease HIII [Staphylococcus aureus 930918-3] gi|294824930|gb|EFG41352.1| ribonuclease HIII [Staphylococcus aureus A9754] gi|302750963|gb|ADL65140.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus str. JKD6008] gi|315196863|gb|EFU27206.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus CGS01] Length = 312 Score = 75.1 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 82/210 (39%), Gaps = 31/210 (14%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 86 LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 144 Query: 70 ELYEKITS---SAIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSAL 119 EL E++ + +++++ + + + + A A++N+ + Sbjct: 145 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAALHNEAIKNVLEKIDSSQLDYIV 204 Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 ID + E LP + KG+S SL+IA ASII++ M K Sbjct: 205 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK--- 261 Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPSCI 196 + G IK+ G S + Sbjct: 262 NINMTIPKGAGAKVDVIAAKIIKKYGLSRL 291 >gi|308174559|ref|YP_003921264.1| ribonuclease HIII [Bacillus amyloliquefaciens DSM 7] gi|307607423|emb|CBI43794.1| ribonuclease HIII [Bacillus amyloliquefaciens DSM 7] gi|328554482|gb|AEB24974.1| ribonuclease HIII [Bacillus amyloliquefaciens TA208] gi|328912886|gb|AEB64482.1| ribonuclease HIII [Bacillus amyloliquefaciens LL3] Length = 313 Score = 75.1 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 24/168 (14%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79 V G DEVG G GP+ VA D + G+ DSK + + E+ + + + Sbjct: 94 MSVIGSDEVGTGDYFGPITVACAYADKTKLSLMKELGVKDSKDLKDPQIIEIAKLLIKTI 153 Query: 80 IISISSASHQYIDKHNIHKATL-----DAIYHAVENL-----QVIPRSALIDGRSIP--- 126 S+ ++ ++ + A+ NL V P + LID + P Sbjct: 154 PYSLLVLKNEKYNQMQEKGMSQGKMKALLHNQAISNLLKKMNGVKPEAILIDQFAEPGIY 213 Query: 127 -------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + + + F K +SI LS+AAASIIA+ + M ++ Sbjct: 214 FKHLSGRDIVKEKTFFSTKAESIHLSVAAASIIARYSFLLEMDKLSRE 261 >gi|302036358|ref|YP_003796680.1| ribonuclease HIII (fragment) [Candidatus Nitrospira defluvii] gi|300604422|emb|CBK40754.1| Ribonuclease HIII (fragment) [Candidatus Nitrospira defluvii] Length = 219 Score = 75.1 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 25/167 (14%) Query: 27 AGIDEVGRGALAGPVVVAAII----LDPNNIPFGINDSKKISHKKREELYEKIT---SSA 79 GIDE G+G GP+V+AA+ L+ + + DSKKIS + E+ I + Sbjct: 13 IGIDESGKGDYFGPLVIAAVFVTPALEQDLALMQVRDSKKISDGRILEMAPDIRLLCPHS 72 Query: 80 IISISSASHQYI--DKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSI---------P 126 +++I + + N+++ A+ENL QV A+ D Sbjct: 73 LVAIGPQRYNELYAKIKNLNRLLAWGHARALENLLQQVDCDLAIADQFGDERLILNALQE 132 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTR----DRLMRIAHKKYP 169 + + K +S L++AAASI+A+ DRL + P Sbjct: 133 KGKQIRLVQRTKAES-DLAVAAASILARADFLQRLDRLSQELSTTLP 178 >gi|69245129|ref|ZP_00603253.1| Ribonuclease HIII [Enterococcus faecium DO] gi|257879657|ref|ZP_05659310.1| ribonuclease HIII [Enterococcus faecium 1,230,933] gi|257890323|ref|ZP_05669976.1| ribonuclease HIII [Enterococcus faecium 1,231,410] gi|258614464|ref|ZP_05712234.1| ribonuclease HIII [Enterococcus faecium DO] gi|260559681|ref|ZP_05831861.1| ribonuclease HIII [Enterococcus faecium C68] gi|293560083|ref|ZP_06676587.1| ribonuclease hiii [Enterococcus faecium E1162] gi|294614400|ref|ZP_06694316.1| ribonuclease hiii [Enterococcus faecium E1636] gi|294617524|ref|ZP_06697154.1| ribonuclease hiii [Enterococcus faecium E1679] gi|68195972|gb|EAN10405.1| Ribonuclease HIII [Enterococcus faecium DO] gi|257813885|gb|EEV42643.1| ribonuclease HIII [Enterococcus faecium 1,230,933] gi|257826683|gb|EEV53309.1| ribonuclease HIII [Enterococcus faecium 1,231,410] gi|260074349|gb|EEW62671.1| ribonuclease HIII [Enterococcus faecium C68] gi|291592708|gb|EFF24301.1| ribonuclease hiii [Enterococcus faecium E1636] gi|291596130|gb|EFF27393.1| ribonuclease hiii [Enterococcus faecium E1679] gi|291605950|gb|EFF35380.1| ribonuclease hiii [Enterococcus faecium E1162] Length = 305 Score = 74.7 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 27/181 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G+ GP+ V A + + + G+ DSK++ + +L + + + Sbjct: 91 VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKKTIPY 150 Query: 82 SISSASHQYID----KHNIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPED---- 128 + S + + K+N + + A+ L P + LID + + Sbjct: 151 KLLVLSPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIEPEKPEAILIDQFTPEANFKKY 210 Query: 129 -------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 L + + V KG+ L++AAASII +R + HK + G G T Sbjct: 211 ARLEKNQLQEKLYFVTKGEQYHLAVAAASII---SRASFLEELHKASAEAGITLPSGAGT 267 Query: 182 A 182 Sbjct: 268 K 268 >gi|313609179|gb|EFR84856.1| ribonuclease hiii [Listeria monocytogenes FSL F2-208] Length = 293 Score = 74.7 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 30/189 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 78 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137 Query: 79 AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123 +++ + + + K +++ + A A+EN+ V P + LID Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 197 Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 P + F K + + LS+AAASIIA R + ++ + + G G Sbjct: 198 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDEMSKEVGIPLPKGAG 254 Query: 181 TAKHQQVIK 189 H + Sbjct: 255 --PHVDAVA 261 >gi|297208222|ref|ZP_06924652.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912299|ref|ZP_07129742.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TCH70] gi|296886961|gb|EFH25864.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886545|gb|EFK81747.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TCH70] Length = 318 Score = 74.7 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 31/208 (14%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 92 LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150 Query: 70 ELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSAL 119 EL E++ + +++++ + + + + A+ H A++N+ + Sbjct: 151 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIV 210 Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 ID + E LP + KG+S SL+IA ASII++ M K Sbjct: 211 IDQFAKREVYNHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK--- 267 Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPS 194 + G IK+ G S Sbjct: 268 NINMTIPKGAGAKVDVIAAKIIKKYGLS 295 >gi|21282752|ref|NP_645840.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MW2] gi|73917853|sp|Q8NX59|RNH3_STAAW RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|21204190|dbj|BAB94888.1| MW1023 [Staphylococcus aureus subsp. aureus MW2] Length = 312 Score = 74.7 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 31/208 (14%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 86 LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 144 Query: 70 ELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSAL 119 EL E++ + +++++ + + + + A+ H A++N+ + Sbjct: 145 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIV 204 Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 ID + E LP + KG+S SL+IA ASII++ M K Sbjct: 205 IDQFAKREVYNHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK--- 261 Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPS 194 + G IK+ G S Sbjct: 262 NINMTIPKGAGAKVDVIAAKIIKKYGLS 289 >gi|257882653|ref|ZP_05662306.1| ribonuclease HIII [Enterococcus faecium 1,231,502] gi|257883962|ref|ZP_05663615.1| ribonuclease HIII [Enterococcus faecium 1,231,501] gi|293568791|ref|ZP_06680105.1| ribonuclease hiii [Enterococcus faecium E1071] gi|294622759|ref|ZP_06701714.1| ribonuclease hiii [Enterococcus faecium U0317] gi|257818311|gb|EEV45639.1| ribonuclease HIII [Enterococcus faecium 1,231,502] gi|257819800|gb|EEV46948.1| ribonuclease HIII [Enterococcus faecium 1,231,501] gi|291588508|gb|EFF20342.1| ribonuclease hiii [Enterococcus faecium E1071] gi|291597810|gb|EFF28947.1| ribonuclease hiii [Enterococcus faecium U0317] Length = 305 Score = 74.7 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 27/181 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G+ GP+ V A + + + G+ DSK++ + +L + + + Sbjct: 91 VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKKTIPY 150 Query: 82 SISSASHQYID----KHNIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPED---- 128 + S + + K+N + + A+ L P + LID + + Sbjct: 151 KLLVLSPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIEPEKPEAILIDQFTPEANFKKY 210 Query: 129 -------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 L + + V KG+ L++AAASII +R + K + G G T Sbjct: 211 ARLEKNQLQEKLYFVTKGEQYHLAVAAASII---SRASFLEELDKASAEAGITLPSGAGT 267 Query: 182 A 182 Sbjct: 268 K 268 >gi|73917846|sp|Q720K1|RNH3_LISMF RecName: Full=Ribonuclease HIII; Short=RNase HIII Length = 308 Score = 74.7 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 30/189 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 93 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 152 Query: 79 AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123 +++ + + + K +++ + A A+EN+ V P + LID Sbjct: 153 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 212 Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 P + F K + + LS+AAASIIA R + ++ + G G Sbjct: 213 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDAMSKEVGIPLPKGAG 269 Query: 181 TAKHQQVIK 189 H + Sbjct: 270 --PHVDAVA 276 >gi|294501477|ref|YP_003565177.1| ribonuclease HIII [Bacillus megaterium QM B1551] gi|294351414|gb|ADE71743.1| ribonuclease HIII [Bacillus megaterium QM B1551] Length = 304 Score = 74.7 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 31/199 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G GP+ V A + +P G+ DSK+++ K E+ +++ S Sbjct: 89 VIGSDEVGTGDYFGPMTVVAAYVQKEQLPLLKELGVRDSKELTDAKIIEIAKQLVSFIPY 148 Query: 82 SISSASHQYID---KHNIHKATLDAIYH--AVENL-----QVIPRSALID---------- 121 S+ ++ + + + + + A+ H A+ N+ P + LID Sbjct: 149 SLLVLHNEKYNAFQEKGMSQGKMKALLHNKALSNVLKKLDPEKPDAILIDQFVEKNTYYK 208 Query: 122 -GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 E + F KG+S+ LS+AAASIIA+ + M + +K G G Sbjct: 209 HVVKEKEIIKENVFFSTKGESVHLSVAAASIIARYAFLKQMDLLTEK---TGMVIPRGAG 265 Query: 181 TAKHQQV---IKEKGPSCI 196 IK+ G + + Sbjct: 266 AQVDIAAAKIIKKHGVNAL 284 >gi|226223828|ref|YP_002757935.1| ribonuclease HIII [Listeria monocytogenes Clip81459] gi|259494076|sp|C1L2D3|RNH3_LISMC RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|225876290|emb|CAS04999.1| Putative ribonuclease HIII [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 308 Score = 74.3 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 30/189 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 93 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 152 Query: 79 AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123 +++ + + + K +++ + A A+EN+ V P + LID Sbjct: 153 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 212 Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 P + F K + + LS+AAASIIA R + ++ + G G Sbjct: 213 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDAMSKEVGIPLPKGAG 269 Query: 181 TAKHQQVIK 189 H + Sbjct: 270 --PHVDAVA 276 >gi|261208746|ref|ZP_05923183.1| ribonuclease HIII [Enterococcus faecium TC 6] gi|289565570|ref|ZP_06446017.1| ribonuclease HIII [Enterococcus faecium D344SRF] gi|260077248|gb|EEW64968.1| ribonuclease HIII [Enterococcus faecium TC 6] gi|289162652|gb|EFD10505.1| ribonuclease HIII [Enterococcus faecium D344SRF] Length = 305 Score = 74.3 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 27/181 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G+ GP+ V A + + + G+ DSK++ + +L + + + Sbjct: 91 VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKKTIPY 150 Query: 82 SISSASHQYID----KHNIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPED---- 128 + S + + K+N + + A+ L P + LID + + Sbjct: 151 KLLVLSPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPEKPEAILIDQFTPEANFKKY 210 Query: 129 -------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 L + + V KG+ L++AAASII +R + K + G G T Sbjct: 211 ARLEKNQLQEKLYFVTKGEQYHLAVAAASII---SRASFLEELDKASAESGITLPSGAGT 267 Query: 182 A 182 Sbjct: 268 K 268 >gi|46907447|ref|YP_013836.1| ribonuclease HIII [Listeria monocytogenes serotype 4b str. F2365] gi|46880715|gb|AAT04013.1| putative ribonuclease HIII [Listeria monocytogenes serotype 4b str. F2365] Length = 293 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 30/189 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 78 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137 Query: 79 AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123 +++ + + + K +++ + A A+EN+ V P + LID Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 197 Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 P + F K + + LS+AAASIIA R + ++ + G G Sbjct: 198 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDAMSKEVGIPLPKGAG 254 Query: 181 TAKHQQVIK 189 H + Sbjct: 255 --PHVDAVA 261 >gi|258423817|ref|ZP_05686703.1| ribonuclease HIII [Staphylococcus aureus A9635] gi|257846049|gb|EEV70077.1| ribonuclease HIII [Staphylococcus aureus A9635] Length = 318 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 84/210 (40%), Gaps = 31/210 (14%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 92 LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150 Query: 70 ELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSAL 119 +L E++ + +++++ + + + + A+ H A++N+ + Sbjct: 151 DLAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIV 210 Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 ID + E LP + KG+S SL+IA ASII++ M K Sbjct: 211 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK--- 267 Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPSCI 196 + G IK+ G S + Sbjct: 268 NINMTIPKGAGAKVDVIAAKIIKKYGISRL 297 >gi|296331590|ref|ZP_06874059.1| ribonuclease HIII [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675451|ref|YP_003867123.1| ribonuclease HIII [Bacillus subtilis subsp. spizizenii str. W23] gi|296151185|gb|EFG92065.1| ribonuclease HIII [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413695|gb|ADM38814.1| ribonuclease HIII [Bacillus subtilis subsp. spizizenii str. W23] Length = 313 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 54/210 (25%), Positives = 87/210 (41%), Gaps = 34/210 (16%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 V G DEVG G GP+ V +D +P G+ DSK + + E+ + + Sbjct: 94 MSVIGSDEVGTGDYFGPMTVVCAYVDKTMLPLMKELGVKDSKDLKDPQIIEIARNLIKTI 153 Query: 80 IISISSASHQYID---KHNIHKATLDA--IYHAVENL-----QVIPRSALIDGRSIP--- 126 S+ ++ + + + + + A A+ +L P + LID + P Sbjct: 154 PYSLLVLKNEKYNSMQEKGMSQGKMKALLHNQAITHLLRKMDGAKPEAILIDQFAEPGVY 213 Query: 127 -------EDLPCQAFAVIKGDSISLSIAAASIIAKVTR----DRLMRIAHKKYPDYGFDS 175 + + + + K + I LS+AAASIIA+ + D+L R A P G Sbjct: 214 FNHLKGRDIVRERTYFSTKAEGIHLSVAAASIIARYSFLMEMDKLSREAGMTLPK-GAGP 272 Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 HV AK +I +KG S + TF L Sbjct: 273 HVDEAAAK---LILKKGASAL--RTFTKLH 297 >gi|255521227|ref|ZP_05388464.1| ribonuclease HIII [Listeria monocytogenes FSL J1-175] Length = 260 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 25/154 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 78 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137 Query: 79 AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123 +++ + + + K +++ + A A+EN+ V P + LID Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 197 Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 P + F K + + LS+AAASIIA+ Sbjct: 198 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIAR 231 >gi|254823518|ref|ZP_05228519.1| ribonuclease HIII [Listeria monocytogenes FSL J1-194] gi|254852903|ref|ZP_05242251.1| ribonuclease HIII [Listeria monocytogenes FSL R2-503] gi|254932894|ref|ZP_05266253.1| ribonuclease HIII [Listeria monocytogenes HPB2262] gi|254992865|ref|ZP_05275055.1| ribonuclease HIII [Listeria monocytogenes FSL J2-064] gi|300764377|ref|ZP_07074371.1| ribonuclease HIII [Listeria monocytogenes FSL N1-017] gi|258606238|gb|EEW18846.1| ribonuclease HIII [Listeria monocytogenes FSL R2-503] gi|293584448|gb|EFF96480.1| ribonuclease HIII [Listeria monocytogenes HPB2262] gi|293592738|gb|EFG00499.1| ribonuclease HIII [Listeria monocytogenes FSL J1-194] gi|300515029|gb|EFK42082.1| ribonuclease HIII [Listeria monocytogenes FSL N1-017] gi|328466622|gb|EGF37757.1| ribonuclease HIII [Listeria monocytogenes 1816] gi|332311613|gb|EGJ24708.1| Ribonuclease HIII [Listeria monocytogenes str. Scott A] Length = 293 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 30/189 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 78 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137 Query: 79 AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123 +++ + + + K +++ + A A+EN+ V P + LID Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 197 Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 P + F K + + LS+AAASIIA R + ++ + G G Sbjct: 198 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDAMSKEVGIPLPKGAG 254 Query: 181 TAKHQQVIK 189 H + Sbjct: 255 --PHVDAVA 261 >gi|49485978|ref|YP_043199.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MSSA476] gi|73917852|sp|Q6GA74|RNH3_STAAS RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|49244421|emb|CAG42849.1| putative ribonuclease [Staphylococcus aureus subsp. aureus MSSA476] Length = 312 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 47/208 (22%), Positives = 83/208 (39%), Gaps = 31/208 (14%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 86 LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 144 Query: 70 ELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSAL 119 EL +++ + +++++ + + + + A+ H A++N+ + Sbjct: 145 ELADQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIV 204 Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 ID + E LP + KG+S SL+IA ASII++ M K Sbjct: 205 IDQFAKREVYNHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISK--- 261 Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPS 194 + G IK+ G S Sbjct: 262 NINMTIPKGAGAKVDVIAAKIIKKYGLS 289 >gi|321312395|ref|YP_004204682.1| ribonuclease HIII [Bacillus subtilis BSn5] gi|320018669|gb|ADV93655.1| ribonuclease HIII [Bacillus subtilis BSn5] Length = 312 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 88/210 (41%), Gaps = 34/210 (16%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 V G DEVG G GP+ V +D +P G+ DSK + + E+ + + Sbjct: 93 MSVIGSDEVGTGDYFGPMTVVCAYVDKTMLPLMKELGVKDSKDLKDPQIIEIARNLIKTI 152 Query: 80 IISISSASHQYID---KHNIHKATLDA--IYHAVENL-----QVIPRSALIDGRSIP--- 126 S+ ++ + + + + + A A+ +L + P + LID + P Sbjct: 153 PYSLLVLKNEKYNSMQEKGMSQGKMKALLHNQAITHLLRKMDGIKPEAILIDQFAEPGVY 212 Query: 127 -------EDLPCQAFAVIKGDSISLSIAAASIIAKVTR----DRLMRIAHKKYPDYGFDS 175 + + + + K + I L++AAASIIA+ + D+L R A P G Sbjct: 213 FNHLKGRDIVKERTYFSTKAEGIHLAVAAASIIARYSFLMEMDKLSREAGMTLPK-GAGP 271 Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 HV AK +I +KG S + TF L Sbjct: 272 HVDEAAAK---LILKKGASAL--RTFTKLH 296 >gi|291485294|dbj|BAI86369.1| ribonuclease HIII [Bacillus subtilis subsp. natto BEST195] Length = 312 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 34/210 (16%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 V G DEVG G GP+ V +D +P G+ DSK + + E+ + + Sbjct: 93 MSVIGSDEVGTGDYFGPMTVVCAYVDKTMLPLMKELGVKDSKDLKDPQIIEIARNLIKTI 152 Query: 80 IISISSASHQYID---KHNIHKATLDA--IYHAVENL-----QVIPRSALIDGRSIP--- 126 S+ ++ + + + + + A A+ +L V P + LID + P Sbjct: 153 PYSLLVLKNEKYNSMQEKGMSQGKMKALLHNQAITHLLRKLDGVKPEAILIDQFAEPGVY 212 Query: 127 -------EDLPCQAFAVIKGDSISLSIAAASIIAKVTR----DRLMRIAHKKYPDYGFDS 175 + + + + K + I L++AAASIIA+ + D+L R A P G Sbjct: 213 FNHLKGRDIVKERTYFSTKAEGIHLAVAAASIIARYSFLMEMDKLSREAGMTLPK-GAGP 271 Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 HV AK +I +KG S + TF L Sbjct: 272 HVDEAAAK---LILKKGASAL--RTFTKLH 296 >gi|293366878|ref|ZP_06613554.1| ribonuclease HIII [Staphylococcus epidermidis M23864:W2(grey)] gi|291319179|gb|EFE59549.1| ribonuclease HIII [Staphylococcus epidermidis M23864:W2(grey)] gi|329729960|gb|EGG66351.1| ribonuclease HIII [Staphylococcus epidermidis VCU144] gi|329734428|gb|EGG70741.1| ribonuclease HIII [Staphylococcus epidermidis VCU045] gi|329736208|gb|EGG72480.1| ribonuclease HIII [Staphylococcus epidermidis VCU028] Length = 308 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 28/171 (16%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS---SA 79 G DE G G GP+ V A + ++I G++DSKK++ K +L E++ + + Sbjct: 91 IGSDEAGSGDYFGPLTVCAAYVSQSHIKILKELGVDDSKKLNDTKIVDLAEQLITFIPHS 150 Query: 80 IISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSIPE----- 127 ++++ + + + + A+ H A++N+ Q +ID + E Sbjct: 151 LLTLDNVKYNERQSIGWSQVKMKAVLHNEAIKNVLQKIEQDQLDYIVIDQFAKREVYQHY 210 Query: 128 -----DLPCQAFAVIKGDSISLSIAAASIIAKVTR----DRLMRIAHKKYP 169 P + KG+S SL+IAAASII++ D + + H + P Sbjct: 211 ALSALPFPDKTKFETKGESKSLAIAAASIISRYAFVKHMDHISKKLHMEIP 261 >gi|149037819|gb|EDL92179.1| ribonuclease H2, large subunit, isoform CRA_c [Rattus norvegicus] gi|149037822|gb|EDL92182.1| ribonuclease H2, large subunit, isoform CRA_c [Rattus norvegicus] Length = 158 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 7/108 (6%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80 V G+DE GRG + GP+V A + + DSK ++ +RE L+ K+ Sbjct: 29 CVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGD 88 Query: 81 ---ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 ++ S I + + + + + + + A+ + Sbjct: 89 FVGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKV 136 >gi|227552104|ref|ZP_03982153.1| ribonuclease H [Enterococcus faecium TX1330] gi|227178770|gb|EEI59742.1| ribonuclease H [Enterococcus faecium TX1330] Length = 313 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 70/181 (38%), Gaps = 27/181 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G+ GP+ V A + + + G+ DSK++ + +L + + + Sbjct: 99 VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKETIPY 158 Query: 82 SISSASHQYID----KHNIHKATLDAIYHAVENL-----QVIPRSALIDGRSI------- 125 + + + K+N + + A+ L P + LID + Sbjct: 159 KLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPEKPEAILIDQFTPEANFKKY 218 Query: 126 ----PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 L + + V KG+ L++AAASII +R + K + G G T Sbjct: 219 ARLEKNHLQEKLYFVTKGEQYHLAVAAASII---SRASFLEELDKASAEAGITLPSGAGT 275 Query: 182 A 182 Sbjct: 276 K 276 >gi|16803268|ref|NP_464753.1| ribonuclease HIII [Listeria monocytogenes EGD-e] gi|20978687|sp|Q8Y7P5|RNH3_LISMO RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|16410644|emb|CAC99306.1| rnhC [Listeria monocytogenes EGD-e] Length = 308 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 25/154 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 93 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 152 Query: 79 AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123 +++ + + + K +++ + A A+EN+ + P + LID Sbjct: 153 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTYYR 212 Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 P + F K + + LS+AAASIIA+ Sbjct: 213 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIAR 246 >gi|257886734|ref|ZP_05666387.1| ribonuclease HIII [Enterococcus faecium 1,141,733] gi|257895300|ref|ZP_05674953.1| ribonuclease HIII [Enterococcus faecium Com12] gi|293378171|ref|ZP_06624340.1| ribonuclease HIII [Enterococcus faecium PC4.1] gi|257822788|gb|EEV49720.1| ribonuclease HIII [Enterococcus faecium 1,141,733] gi|257831865|gb|EEV58286.1| ribonuclease HIII [Enterococcus faecium Com12] gi|292643035|gb|EFF61176.1| ribonuclease HIII [Enterococcus faecium PC4.1] Length = 305 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 70/181 (38%), Gaps = 27/181 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G+ GP+ V A + + + G+ DSK++ + +L + + + Sbjct: 91 VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKETIPY 150 Query: 82 SISSASHQYID----KHNIHKATLDAIYHAVENL-----QVIPRSALIDGRSI------- 125 + + + K+N + + A+ L P + LID + Sbjct: 151 KLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPEKPEAILIDQFTPEANFKKY 210 Query: 126 ----PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 L + + V KG+ L++AAASII +R + K + G G T Sbjct: 211 ARLEKNHLQEKLYFVTKGEQYHLAVAAASII---SRASFLEELDKASAEAGITLPSGAGT 267 Query: 182 A 182 Sbjct: 268 K 268 >gi|254828588|ref|ZP_05233275.1| rnhC [Listeria monocytogenes FSL N3-165] gi|258600986|gb|EEW14311.1| rnhC [Listeria monocytogenes FSL N3-165] Length = 293 Score = 73.6 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 33/196 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 78 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137 Query: 79 AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123 +++ + + + K +++ + A A+EN+ + P + LID Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTYYR 197 Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAKV----TRDRLMRIAHKKYPDYGFDSH 176 P + F K + + LS+AAASIIA+ D + + P G H Sbjct: 198 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIARYKFVQAFDAMSKEVGISLPK-GAGPH 256 Query: 177 VGYPTAKHQQVIKEKG 192 V A ++I+ G Sbjct: 257 VD---AVAAEIIERFG 269 >gi|47095070|ref|ZP_00232683.1| ribonuclease HIII, putative [Listeria monocytogenes str. 1/2a F6854] gi|254830018|ref|ZP_05234673.1| ribonuclease HIII [Listeria monocytogenes 10403S] gi|254898611|ref|ZP_05258535.1| ribonuclease HIII [Listeria monocytogenes J0161] gi|254911900|ref|ZP_05261912.1| ribonuclease HIII [Listeria monocytogenes J2818] gi|254936225|ref|ZP_05267922.1| rnhC [Listeria monocytogenes F6900] gi|284801548|ref|YP_003413413.1| ribonuclease HIII [Listeria monocytogenes 08-5578] gi|284994690|ref|YP_003416458.1| ribonuclease HIII [Listeria monocytogenes 08-5923] gi|47016688|gb|EAL07608.1| ribonuclease HIII, putative [Listeria monocytogenes str. 1/2a F6854] gi|258608815|gb|EEW21423.1| rnhC [Listeria monocytogenes F6900] gi|284057110|gb|ADB68051.1| ribonuclease HIII [Listeria monocytogenes 08-5578] gi|284060157|gb|ADB71096.1| ribonuclease HIII [Listeria monocytogenes 08-5923] gi|293589858|gb|EFF98192.1| ribonuclease HIII [Listeria monocytogenes J2818] Length = 293 Score = 73.6 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 33/196 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 78 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137 Query: 79 AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123 +++ + + + K +++ + A A+EN+ + P + LID Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTYYR 197 Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAKV----TRDRLMRIAHKKYPDYGFDSH 176 P + F K + + LS+AAASIIA+ D + + P G H Sbjct: 198 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIARYKFVQAFDAMSKEVGISLPK-GAGPH 256 Query: 177 VGYPTAKHQQVIKEKG 192 V A ++I+ G Sbjct: 257 VD---AVAAEIIERFG 269 >gi|330719016|ref|ZP_08313616.1| ribonuclease HIII [Leuconostoc fallax KCTC 3537] Length = 214 Score = 73.6 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 70/166 (42%), Gaps = 26/166 (15%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G DEVG GA GP+ AA+ + +N+ G+ DSK ++ ++ KI + + Sbjct: 3 GSDEVGAGAYFGPLTTAAVYISQDNLDWVRQLGVADSKTLTDHDMIKMAPKIIAHLPHHV 62 Query: 84 SSASHQYID--KHNIHKATLDAIYHAVENLQV-------IPRSALIDGRSIPEDL----- 129 + + + + + + AI H +V P++ LID ++P+ Sbjct: 63 VNLLPEKYNAIQPQNNVNQMKAISHNFALHKVLEKIAPQKPQAILIDQFALPQTYYKHLT 122 Query: 130 PCQAFAVI--------KGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 ++ K + LS+AAASI+A+ + M+ + Sbjct: 123 NANQQPIVRENVYFTTKAEQYHLSVAAASILARYVELQTMKKLSAE 168 >gi|290893289|ref|ZP_06556275.1| rnhC protein [Listeria monocytogenes FSL J2-071] gi|290557097|gb|EFD90625.1| rnhC protein [Listeria monocytogenes FSL J2-071] Length = 293 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 25/154 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 78 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137 Query: 79 AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123 +++ + + + K +++ + A A+EN+ V P + LID Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 197 Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 P + F K + + LS+AAASIIA+ Sbjct: 198 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIAR 231 >gi|257892930|ref|ZP_05672583.1| ribonuclease HIII [Enterococcus faecium 1,231,408] gi|257829309|gb|EEV55916.1| ribonuclease HIII [Enterococcus faecium 1,231,408] Length = 305 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 70/181 (38%), Gaps = 27/181 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G+ GP+ V A + + + G+ DSK++ + +L + + + Sbjct: 91 VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKETIPY 150 Query: 82 SISSASHQYID----KHNIHKATLDAIYHAVENL-----QVIPRSALIDGRSI------- 125 + + + K+N + + A+ L P + LID + Sbjct: 151 KLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPEKPEAILIDQFTPEANFKKY 210 Query: 126 ----PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 L + + V KG+ L++AAASII +R + K + G G T Sbjct: 211 ARLEKNHLQEKLYFVTKGEQYHLAVAAASII---SRASFLEELDKASAEAGITLPSGAGT 267 Query: 182 A 182 Sbjct: 268 K 268 >gi|317129873|ref|YP_004096155.1| ribonuclease HIII [Bacillus cellulosilyticus DSM 2522] gi|315474821|gb|ADU31424.1| ribonuclease HIII [Bacillus cellulosilyticus DSM 2522] Length = 340 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 73/205 (35%), Gaps = 35/205 (17%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G DE G G GP+ V L + +G+ DSK I+ E+ ++ S+ Sbjct: 127 GSDETGTGDYFGPMTVVCAHLSKEQMKAIESWGVRDSKMINDTTIREIAPRLVKQCTYSL 186 Query: 84 SSASHQ---YIDKHNIHKATLDAIYH--AVENLQVIPRS-------ALIDGRSIPEDL-- 129 ++ + + +++ + A+ H A+ N+ ID P+ Sbjct: 187 LVLKNEKYNELQERGMNQGQMKAMLHHQAIVNVMKKCDDESFTYDGVFIDQFVQPDRYFE 246 Query: 130 -----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + K ++I S+AAASI+A+ + M + D G G Sbjct: 247 YLKVKGKSWTSKKPLYFATKAENIHPSVAAASILARYSFLNEMEKLER---DIGLPLPKG 303 Query: 179 YPTAKHQQV---IKEKGPSCIHRLT 200 + + KG ++R T Sbjct: 304 AGPKVDEAARNILHLKGKETLYRCT 328 >gi|294056228|ref|YP_003549886.1| ribonuclease HIII [Coraliomargarita akajimensis DSM 45221] gi|293615561|gb|ADE55716.1| ribonuclease HIII [Coraliomargarita akajimensis DSM 45221] Length = 329 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 25/164 (15%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITSSAIIS 82 AG+DE G+G L GP+V A ++ D + + G+ DSKK++ +L ++I + + Sbjct: 111 AGMDESGKGDLFGPLVTACVVADGDMVRQWLELGVADSKKLTDNSILKLEKEIRKTKGVV 170 Query: 83 ISSASHQY------IDKHNIHKATLDAIYHA---VENLQVIP----------RSALIDGR 123 I +A + K + + L A YH+ + L P + L+D Sbjct: 171 IKTAFARMPKYNDLYHKFDRNLNKLLAWYHSKSLIGALDERPAPWGLLDQFTKEKLVDAY 230 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + + + + K +S +AAASI+A+ R M+ ++ Sbjct: 231 -VKDRKDFKLVSRTKAES-DPVVAAASIVARAVYVREMKRLSEE 272 >gi|257897916|ref|ZP_05677569.1| ribonuclease HIII [Enterococcus faecium Com15] gi|257835828|gb|EEV60902.1| ribonuclease HIII [Enterococcus faecium Com15] Length = 305 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 70/181 (38%), Gaps = 27/181 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G+ GP+ V A + + + G+ DSK++ + +L + + + Sbjct: 91 VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKETIPY 150 Query: 82 SISSASHQYID----KHNIHKATLDAIYHAVENL-----QVIPRSALIDGRSI------- 125 + + + K+N + + A+ L P + LID + Sbjct: 151 KLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPEKPEAILIDQFTPEANFKKY 210 Query: 126 ----PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 L + + V KG+ L++AAASII +R + K + G G T Sbjct: 211 ARLEKNHLQEKLYFVTKGEQYHLAVAAASII---SRASFLEELDKASAEAGITLPSGAGT 267 Query: 182 A 182 Sbjct: 268 K 268 >gi|224499100|ref|ZP_03667449.1| ribonuclease HIII [Listeria monocytogenes Finland 1988] Length = 293 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 25/154 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 78 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 137 Query: 79 AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123 +++ + + + K +++ + A A+EN+ + P + LID Sbjct: 138 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTYYR 197 Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 P + F K + + LS+AAASIIA+ Sbjct: 198 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIAR 231 >gi|16079914|ref|NP_390740.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. 168] gi|221310803|ref|ZP_03592650.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. 168] gi|221315128|ref|ZP_03596933.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320046|ref|ZP_03601340.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. JH642] gi|221324328|ref|ZP_03605622.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. SMY] gi|7227926|sp|P94541|RNH3_BACSU RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|1770032|emb|CAA99565.1| hypothetical protein [Bacillus subtilis] gi|2635327|emb|CAB14822.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. 168] Length = 313 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 34/210 (16%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 V G DEVG G GP+ V +D +P G+ DSK + + E+ + + Sbjct: 94 MSVIGSDEVGTGDYFGPMTVVCAYVDKTMLPLMKELGVKDSKDLKDPQIIEIARNLIKTI 153 Query: 80 IISISSASHQYID---KHNIHKATLDA--IYHAVENL-----QVIPRSALIDGRSIP--- 126 S+ ++ + + + + + A A+ +L V P + LID + P Sbjct: 154 PYSLLVLKNEKYNSMQEKGMSQGKMKALLHNQAITHLLRKLDGVKPEAILIDQFAEPGVY 213 Query: 127 -------EDLPCQAFAVIKGDSISLSIAAASIIAKVTR----DRLMRIAHKKYPDYGFDS 175 + + + + K + I L++AAASIIA+ + D+L R A P G Sbjct: 214 FNHLKGRDIVKERTYFSTKAEGIHLAVAAASIIARYSFLMEMDKLSRAAGMTLPK-GAGP 272 Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 HV AK +I +KG S + TF L Sbjct: 273 HVDEAAAK---LILKKGASAL--RTFTKLH 297 >gi|16800260|ref|NP_470528.1| ribonuclease HIII [Listeria innocua Clip11262] gi|20978705|sp|Q92CI0|RNH3_LISIN RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|16413650|emb|CAC96422.1| rnhC [Listeria innocua Clip11262] Length = 308 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 25/154 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 93 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPIVPH 152 Query: 79 AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123 +++ + + + K +++ + A A+EN+ + P + LID Sbjct: 153 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTYYR 212 Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 P + F K + + LS+AAASIIA+ Sbjct: 213 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIAR 246 >gi|148673842|gb|EDL05789.1| mCG129830, isoform CRA_b [Mus musculus] Length = 142 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 7/78 (8%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI- 80 V G+DE GRG + GP+V A + + DSK ++ +RE L+ K+ Sbjct: 1 VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDF 60 Query: 81 --ISISSASHQYIDKHNI 96 ++ S I + Sbjct: 61 VGWALDVLSPNLISTSML 78 >gi|290968977|ref|ZP_06560512.1| ribonuclease HII [Megasphaera genomosp. type_1 str. 28L] gi|290780933|gb|EFD93526.1| ribonuclease HII [Megasphaera genomosp. type_1 str. 28L] Length = 306 Score = 73.2 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 27/170 (15%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS--SAI 80 G DE G+G + GP+VVAA IL + G+ DSK + + + L E I + Sbjct: 97 MGCDESGKGDVFGPLVVAACILTEEDAAQLRALGVRDSKMVRSTQIKRLAETIKTRLQDR 156 Query: 81 ISISSASHQYIDKH---------NIHKATLDAIYHAVENL--QVIPRSALIDGRSIPEDL 129 S+ Q ++ N++ + L + ++D + Sbjct: 157 YSVQVVMPQEYNRRYVCLAENGKNLNDLLGQLHARNIRRLLSKHKCPCIIVDKFGSERYV 216 Query: 130 PCQAFAVIK---------GDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 + + K G++ ++AAASI+A+ M + Y Sbjct: 217 LQELGTLAKTHTVIQIPHGEA-DTAVAAASILAREAFVAAMEELRRLYGM 265 >gi|297583682|ref|YP_003699462.1| ribonuclease HIII [Bacillus selenitireducens MLS10] gi|297142139|gb|ADH98896.1| ribonuclease HIII [Bacillus selenitireducens MLS10] Length = 311 Score = 73.2 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 63/171 (36%), Gaps = 29/171 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + G DE G G GP+ V A L + +GI DSK I+ K L ++ + Sbjct: 96 LIGSDETGTGDFFGPMTVVACHLTKEQLKTVESWGIRDSKTITDKLIRTLAPRLLDTCTY 155 Query: 82 SISSASHQYIDKH---NIHKATLDAIYH--AVENL-------QVIPRSALIDGRSIPEDL 129 S+ + + + +++ + A+ H A+ N+ LID P Sbjct: 156 SLMTLHNNKYNALQQDGMNQGQMKAMLHHQAISNVIAKLNEEGTEADGVLIDQFCPPGTY 215 Query: 130 P-------------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + K + + ++AAASI+A+ M +K Sbjct: 216 FRYLKQGKLRWSEETPLYFATKAEQLHPAVAAASILARYAFIEEMDRIEEK 266 >gi|15618976|ref|NP_225262.1| ribonuclease HIII [Chlamydophila pneumoniae CWL029] gi|15836599|ref|NP_301123.1| ribonuclease HIII [Chlamydophila pneumoniae J138] gi|33242442|ref|NP_877383.1| ribonuclease HIII [Chlamydophila pneumoniae TW-183] gi|161353772|ref|NP_445321.2| ribonuclease HIII [Chlamydophila pneumoniae AR39] gi|7227929|sp|Q9Z6J1|RNH3_CHLPN RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|4377404|gb|AAD19205.1| Ribonuclease HII [Chlamydophila pneumoniae CWL029] gi|8979441|dbj|BAA99275.1| rbonuclease HII [Chlamydophila pneumoniae J138] gi|33236953|gb|AAP99040.1| ribonuclease HII [Chlamydophila pneumoniae TW-183] Length = 298 Score = 73.2 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 69/187 (36%), Gaps = 33/187 (17%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAI------ILDPNNIPFGINDSKKISHKKREELYE 73 E+++ P G+DE G+G GP+ +AA+ IL + DSK + K L Sbjct: 82 EQDLRPRLGVDESGKGDFFGPLCIAAVYASNAEILKKLYEN-KVQDSKNLKDTKIASLAR 140 Query: 74 KITSSAIISISSASHQYIDKH---NIHKATLDAIYHA--VENLQVIPRSALIDGRSIPED 128 I S + + + ++ + TL A HA + NL P D +I + Sbjct: 141 IIRSLCVCDVIILYPEKYNELYGKFQNLNTLLAWAHATVINNLAPKPA---GDVFAISDQ 197 Query: 129 LPCQAFAVIKG---------------DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 + ++K + +AAASI+A RD ++ K Y Sbjct: 198 FAASEYTLLKALQKKETDITLIQKPRAEQDVVVAAASILA---RDAFVQSIQKLEEQYQV 254 Query: 174 DSHVGYP 180 G Sbjct: 255 QLPKGAG 261 >gi|7189697|gb|AAF38581.1| ribonuclease HII [Chlamydophila pneumoniae AR39] Length = 301 Score = 73.2 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 69/187 (36%), Gaps = 33/187 (17%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAI------ILDPNNIPFGINDSKKISHKKREELYE 73 E+++ P G+DE G+G GP+ +AA+ IL + DSK + K L Sbjct: 85 EQDLRPRLGVDESGKGDFFGPLCIAAVYASNAEILKKLYEN-KVQDSKNLKDTKIASLAR 143 Query: 74 KITSSAIISISSASHQYIDKH---NIHKATLDAIYHA--VENLQVIPRSALIDGRSIPED 128 I S + + + ++ + TL A HA + NL P D +I + Sbjct: 144 IIRSLCVCDVIILYPEKYNELYGKFQNLNTLLAWAHATVINNLAPKPA---GDVFAISDQ 200 Query: 129 LPCQAFAVIKG---------------DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 + ++K + +AAASI+A RD ++ K Y Sbjct: 201 FAASEYTLLKALQKKETDITLIQKPRAEQDVVVAAASILA---RDAFVQSIQKLEEQYQV 257 Query: 174 DSHVGYP 180 G Sbjct: 258 QLPKGAG 264 >gi|293570968|ref|ZP_06682012.1| ribonuclease hiii [Enterococcus faecium E980] gi|291608952|gb|EFF38230.1| ribonuclease hiii [Enterococcus faecium E980] Length = 305 Score = 73.2 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 76/197 (38%), Gaps = 29/197 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G+ GP+ V A + + + G+ DSK++ + +L + + + Sbjct: 91 VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADVLKETIPY 150 Query: 82 SISSASHQYID----KHNIHKATLDAIYHAVENL-----QVIPRSALIDGRSI------- 125 + + + K+N + + A+ L P + LID + Sbjct: 151 KLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPEKPEAILIDQFTPEANFKKY 210 Query: 126 ----PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 L + + V KG+ L++AAASII +R + K + G G T Sbjct: 211 ARLEKNHLQEKLYFVTKGEQYHLAVAAASII---SRASFLEELDKASAEAGITLPSGAGT 267 Query: 182 AKHQQV--IKEKGPSCI 196 Q + EKG I Sbjct: 268 KSDQIAAKLLEKGGMPI 284 >gi|169829510|ref|YP_001699668.1| ribonuclease HIII [Lysinibacillus sphaericus C3-41] gi|238688201|sp|B1HW99|RNH3_LYSSC RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|168993998|gb|ACA41538.1| Ribonuclease HIII [Lysinibacillus sphaericus C3-41] Length = 308 Score = 73.2 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 60/170 (35%), Gaps = 25/170 (14%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS 78 + V G DE G G GP+ VAA+ + + I G+ DSK +S ++ + ++ Sbjct: 92 LMSVLGSDETGTGDYFGPMTVAAVYVPSSKIELINELGVKDSKMLSDDYMRKIAPDLRAA 151 Query: 79 AIISISSASHQYID----------KHNIHKATLDAIYHAVENLQVIPRSALID------- 121 + S+ ++ + K + P LID Sbjct: 152 CVHSVLILRNEKYNSLQAKGYSQGKMKAMMHNKALHNTLAKMAPETPEYILIDQFAERGV 211 Query: 122 -GRSIPEDLPCQAFAV---IKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + + +V K + + +++A ASI+A+ + M Sbjct: 212 YYNYLKNEREIVQESVYFSTKAEQLHVAVATASILARAAFLKEMDRLSDI 261 >gi|84489361|ref|YP_447593.1| putative ribonuclease HIII [Methanosphaera stadtmanae DSM 3091] gi|84372680|gb|ABC56950.1| putative ribonuclease HIII [Methanosphaera stadtmanae DSM 3091] Length = 309 Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 66/173 (38%), Gaps = 26/173 (15%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT 76 K + G DE G+G GP+VV A+ ++I G+ DSKK+S K+ LYEKI Sbjct: 107 KKYQYIIGSDETGKGEWYGPLVVCAVCTSNDDILKLKSIGVKDSKKLSTKEIFSLYEKIE 166 Query: 77 S-SAIISISSASHQYIDKH---------NIHKATLDAIYHAVENL----QVIPRSALIDG 122 + + +K N++ Y + L +ID Sbjct: 167 KLNITYEVIVLKPFSYNKLYTKFTNENKNLNHLLAHLHYKVINQLLTKINTTDVLVIIDK 226 Query: 123 RSIPE-------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 + + G+ + +A +SIIAK ++ ++ ++Y Sbjct: 227 FDYKKMNQYLDINPKIDVIQETNGE-KYIPVATSSIIAKYYYEKTLKEIEERY 278 >gi|169335211|ref|ZP_02862404.1| hypothetical protein ANASTE_01619 [Anaerofustis stercorihominis DSM 17244] gi|169257949|gb|EDS71915.1| hypothetical protein ANASTE_01619 [Anaerofustis stercorihominis DSM 17244] Length = 304 Score = 72.8 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 50/212 (23%), Positives = 94/212 (44%), Gaps = 37/212 (17%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS--- 77 P+ G DEVG+G P++V ++ L+ N G+ DSK +S + +L +I Sbjct: 99 PLLGSDEVGKGDFYAPIIVGSVYLEKNEYDILKTLGVRDSKDLSDDRIIKLASEIKKVTN 158 Query: 78 -SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP-----RSALIDGRSIPE---- 127 +I+ I + + + K + + A H V N++ + + AL+D E Sbjct: 159 NYSILRIGQSKYNELYKKIGNINAILAWAH-VTNIKNVYKKQHFKKALVDKFGREEQIRN 217 Query: 128 ---DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA-- 182 +L + K + ++++AAASI+A RD L+ Y FD +G + Sbjct: 218 GLKELNLEMIFKPKAEQ-NIAVAAASILA---RDALLTTIKNMNKHYDFDFPLGANSIVI 273 Query: 183 -KHQQVIKEKG------PSCIHRLTFRPLRNL 207 K ++ +K+ G +H F+ ++N+ Sbjct: 274 TKGKEFVKKFGEEELNNVCKMH---FKTVQNI 302 >gi|224502477|ref|ZP_03670784.1| ribonuclease HIII [Listeria monocytogenes FSL R2-561] Length = 281 Score = 72.8 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 25/154 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 66 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPH 125 Query: 79 AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123 +++ + + + K +++ + A A+EN+ + P + LID Sbjct: 126 SVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTYYR 185 Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 P + F K + + LS+AAASIIA+ Sbjct: 186 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIAR 219 >gi|167043102|gb|ABZ07812.1| putative uncharacterized protein family UPF0102 [uncultured marine microorganism HF4000_ANIW141I9] Length = 172 Score = 72.8 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 26/46 (56%) Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 M +P+YGF H GY T+ H + + + S IHR +F+P++ Sbjct: 1 MEQYDVIFPEYGFAKHKGYGTSFHMEQLNKNKASLIHRKSFKPVKK 46 >gi|313624050|gb|EFR94134.1| ribonuclease hiii [Listeria innocua FSL J1-023] Length = 293 Score = 72.8 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 25/154 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 78 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPIVPH 137 Query: 79 AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123 +++ + + + + +++ + A A+EN+ V P + LID Sbjct: 138 SVLLCPNPKYNELQQRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 197 Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 P + F K + + LS+AAASIIA+ Sbjct: 198 YLAKEPSIIRDDVFFATKAEGLHLSVAAASIIAR 231 >gi|253731751|ref|ZP_04865916.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724509|gb|EES93238.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 315 Score = 72.8 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 31/208 (14%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 92 LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150 Query: 70 ELYEKITS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSAL 119 EL E++ + +++++ + + + + A+ H A++N+ + Sbjct: 151 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIV 210 Query: 120 IDGRSIPE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 ID + E LP + KG+S SL+IA ASII++ M K Sbjct: 211 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTNMDQISK--- 267 Query: 170 DYGFDSHVGYPTAKHQQV---IKEKGPS 194 + G IK+ G S Sbjct: 268 NINMTIPKGAGAKVDVIAAKIIKKYGLS 295 >gi|323342859|ref|ZP_08083091.1| ribonuclease HIII [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463971|gb|EFY09165.1| ribonuclease HIII [Erysipelothrix rhusiopathiae ATCC 19414] Length = 295 Score = 72.4 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 73/196 (37%), Gaps = 39/196 (19%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS 82 AG DEVG G GP+ V A I++ ++ I DSK+++ K ++ + S Sbjct: 87 AGSDEVGTGDYFGPITVCACIVNESDLQRIPVAEIVDSKQMTDDKIRKIAPILKQELQYS 146 Query: 83 ISSASHQYI----DKHNIHKATLDAIYHAVENLQVI---PRSALIDGRSIPEDL------ 129 + ++ D N++ A NL+ P A+ID + Sbjct: 147 LLILDNKKYNRVHDTMNMNVIKAKLHNQAFLNLKKRYEMPPYAIIDQFMAEKPYYNALKG 206 Query: 130 -PCQAFAVI---KGDSISLSIAAASIIAKV----TRDRLMRIAHKKYPDYGFDSHVGYPT 181 P +I K ++ +++A +IIA+ D+L +P G Sbjct: 207 EPEIFRGLIFETKAENKFIAVACGAIIARFGFLDYLDKLSTKYDCVFP-------KGAG- 258 Query: 182 AKH-----QQVIKEKG 192 H ++ ++ G Sbjct: 259 -AHVDTFGKEFVRRYG 273 >gi|71408510|ref|XP_806655.1| ribonuclease H [Trypanosoma cruzi strain CL Brener] gi|70870462|gb|EAN84804.1| ribonuclease H, putative [Trypanosoma cruzi] Length = 324 Score = 72.4 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 87/223 (39%), Gaps = 51/223 (22%) Query: 26 VAGIDEVGRGALAGPVVV--AAIILDPNNIPF---GINDSKKISHKKREELYEKITS--- 77 V GIDE GRG + GP+V A I L ++ G+NDSK + +R+++ K+ Sbjct: 41 VLGIDEAGRGPVIGPMVYTGAMIALHEHDRLLEYCGVNDSKLLGENQRKDVLCKLQELKT 100 Query: 78 ----SAIISISSASHQY--IDKHNIHKATLDAIYHAVENLQVIP----RSALIDGRSIPE 127 + +++ + + I N++ + D + + A ID PE Sbjct: 101 FSTFTVVVTPAEIAAAMTGIHGKNLNTLSHDTAIAIISKATLEATGMLCGAYIDTVGPPE 160 Query: 128 DLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + K ++ +AAAS++AKV RDR + G D G Sbjct: 161 SYQQRLSGRFPHLRITVAKKAETKFPIVAAASVVAKVERDRHIERL-------GIDVGSG 213 Query: 179 YPT-AKHQQVIKEKGPSCIHRL------------TFRPLRNLS 208 YP+ K ++ +HR ++ P+ L+ Sbjct: 214 YPSDPKVMTWVRSH----VHRFFVLPREFDFVRLSWGPVVELA 252 >gi|319401546|gb|EFV89756.1| ribonuclease HIII [Staphylococcus epidermidis FRI909] Length = 308 Score = 72.4 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 28/178 (15%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKI 75 + N + G DE G G GP+ V A + ++I G++DSKK++ K +L E++ Sbjct: 84 QYNHFHCIGSDEAGSGDYFGPLTVCAAYVSQSHIKILKELGVDDSKKLNDTKIVDLAEQL 143 Query: 76 TS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSI 125 + +++++ + + + + A+ H A++N+ Q +ID + Sbjct: 144 ITFIPHSLLTLDNVKYNERQSLGWSQVKMKAVLHNEAIKNVIQKIEQDQLDYIVIDQFAK 203 Query: 126 PE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTR----DRLMRIAHKKYP 169 E P + KG+S SL+IA ASII++ D + + H + P Sbjct: 204 REVYQHYALSALPFPDKTKFETKGESKSLAIATASIISRYAFVKHMDHISKKLHMEIP 261 >gi|161579047|ref|NP_296655.2| ribonuclease HIII [Chlamydia muridarum Nigg] gi|270285065|ref|ZP_06194459.1| ribonuclease HIII [Chlamydia muridarum Nigg] gi|270289090|ref|ZP_06195392.1| ribonuclease HIII [Chlamydia muridarum Weiss] gi|301336461|ref|ZP_07224663.1| ribonuclease HIII [Chlamydia muridarum MopnTet14] Length = 299 Score = 72.4 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 48/213 (22%), Positives = 77/213 (36%), Gaps = 34/213 (15%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKKREELYEK 74 ++++ P G+DE G+G GP+ A + + I DSK IS K L Sbjct: 82 QQDLRPRIGVDESGKGDFFGPLCTAGVYAPSIKSIESLYEITICDSKLISDAKIPSLARS 141 Query: 75 ITSSAIISISSASHQYIDKHNIHKATLD---AIYHA--VENLQVIPR---SALIDGRSIP 126 I S + + + + + L+ A HA +++L P A+ D + Sbjct: 142 IRSLCTCKVITLFPEKYNALYANFQNLNALLAWTHATIIDDLAPKPTGDVFAISDQFASS 201 Query: 127 EDLPCQAFAVIKGD---------SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 E + QA + D + +AAASI+A RD + Y Sbjct: 202 ERVLLQAVRKKRADIELIQRHRAEQDVVVAAASILA---RDAFLSSMQTLESQYQVRLLK 258 Query: 178 GYPTAKHQQV---IKEKG------PSCIHRLTF 201 G QQ +++KG H TF Sbjct: 259 GASGKVKQQAKEILRDKGQPVLEKVCKTHFKTF 291 >gi|57866643|ref|YP_188306.1| ribonuclease HIII [Staphylococcus epidermidis RP62A] gi|242242439|ref|ZP_04796884.1| ribonuclease HIII [Staphylococcus epidermidis W23144] gi|73917855|sp|Q5HQ34|RNH3_STAEQ RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|57637301|gb|AAW54089.1| ribonuclease HIII [Staphylococcus epidermidis RP62A] gi|242234146|gb|EES36458.1| ribonuclease HIII [Staphylococcus epidermidis W23144] Length = 308 Score = 72.4 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 28/178 (15%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKI 75 + N + G DE G G GP+ V A + ++I G++DSKK++ K +L E++ Sbjct: 84 QYNHFHCIGSDEAGSGDYFGPLTVCAAYVSQSHIKILKELGVDDSKKLNDTKIVDLAEQL 143 Query: 76 TS---SAIISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSI 125 + +++++ + + + + A+ H A++N+ Q +ID + Sbjct: 144 ITFIPHSLLTLDNVKYNERQSLGWSQVKMKAVLHNEAIKNVIQKIEQDQLDYIVIDQFAK 203 Query: 126 PE----------DLPCQAFAVIKGDSISLSIAAASIIAKVTR----DRLMRIAHKKYP 169 E P + KG+S SL+IA ASII++ D + + H + P Sbjct: 204 REVYQHYALSALPFPDKTKFETKGESKSLAIATASIISRYAFVKHMDHISKKLHMEIP 261 >gi|14195187|sp|Q9PL32|RNH3_CHLMU RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|7190317|gb|AAF39144.1| ribonuclease HII [Chlamydia muridarum Nigg] Length = 301 Score = 72.4 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 48/213 (22%), Positives = 77/213 (36%), Gaps = 34/213 (15%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKKREELYEK 74 ++++ P G+DE G+G GP+ A + + I DSK IS K L Sbjct: 84 QQDLRPRIGVDESGKGDFFGPLCTAGVYAPSIKSIESLYEITICDSKLISDAKIPSLARS 143 Query: 75 ITSSAIISISSASHQYIDKHNIHKATLD---AIYHA--VENLQVIPR---SALIDGRSIP 126 I S + + + + + L+ A HA +++L P A+ D + Sbjct: 144 IRSLCTCKVITLFPEKYNALYANFQNLNALLAWTHATIIDDLAPKPTGDVFAISDQFASS 203 Query: 127 EDLPCQAFAVIKGD---------SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 E + QA + D + +AAASI+A RD + Y Sbjct: 204 ERVLLQAVRKKRADIELIQRHRAEQDVVVAAASILA---RDAFLSSMQTLESQYQVRLLK 260 Query: 178 GYPTAKHQQV---IKEKG------PSCIHRLTF 201 G QQ +++KG H TF Sbjct: 261 GASGKVKQQAKEILRDKGQPVLEKVCKTHFKTF 293 >gi|255513539|gb|EET89805.1| ribonuclease HII [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 212 Score = 72.0 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 66/172 (38%), Gaps = 37/172 (21%) Query: 52 NIPFGINDSKKISHKKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDA-----IY 105 G+ DSK +S K+RE L++ I S S I++ + I++ +K +L+ Sbjct: 12 FAEIGVRDSKMLSRKRRELLFKSINSISDAIAVDKITPAEINQAMSNKISLNELEAIRFA 71 Query: 106 HAVENLQVIPRSALIDGRSIPEDLPC---------------------------QAFAVIK 138 + L+ + +D + ++ + + K Sbjct: 72 KLFDQLKEDIGTVYLDSPDVIQEKFGIRFKMSSGKPLKVIGLKQKAQKGIKFTKVISEHK 131 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA-KHQQVIK 189 DS ++AASIIAKV RDR ++ K GYP+ K ++ Sbjct: 132 ADSKYPVVSAASIIAKVVRDREVKKIEKSL---RIRIGSGYPSDSKTIDAVR 180 >gi|116872599|ref|YP_849380.1| ribonuclease HIII [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741477|emb|CAK20601.1| ribonuclease HIII [Listeria welshimeri serovar 6b str. SLCC5334] Length = 293 Score = 72.0 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 25/154 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 78 VIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPIVPH 137 Query: 79 AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123 +++ + + + K +++ + A A+EN+ P + LID Sbjct: 138 SVLLCPNPKYNELQKKGMNQGQMKALLHNRAIENVLKKLAPRKPEAILIDQFAEKNTYYR 197 Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 P + F K + + LS+AAASIIA+ Sbjct: 198 YLAKEPSIIREDVFFATKAEGLHLSVAAASIIAR 231 >gi|322827961|gb|EFZ31928.1| ribonuclease H, putative [Trypanosoma cruzi] Length = 324 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 87/223 (39%), Gaps = 51/223 (22%) Query: 26 VAGIDEVGRGALAGPVVV--AAIILDPNNIPF---GINDSKKISHKKREELYEKITS--- 77 V GIDE GRG + GP+V A I L ++ G+NDSK + +R+++ K+ Sbjct: 41 VLGIDEAGRGPVIGPMVYTGAMIALHEHDRLLEYCGVNDSKLLGENQRKDVLCKLQKLKT 100 Query: 78 ----SAIISISSASHQY--IDKHNIHKATLDAIYHAVENLQVIP----RSALIDGRSIPE 127 + +++ + + I N++ + D + + A ID PE Sbjct: 101 FSTFTVVVTPAEIAAAMTGIHGKNLNTLSHDTAIAIISKATLEATGMLCGAYIDTVGPPE 160 Query: 128 DLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + K ++ +AAAS++AKV RDR + G D G Sbjct: 161 SYQQRLSGRFPHLRITVAKKAETKFPIVAAASVVAKVERDRHIERL-------GIDVGSG 213 Query: 179 YPT-AKHQQVIKEKGPSCIHRL------------TFRPLRNLS 208 YP+ K ++ +HR ++ P+ L+ Sbjct: 214 YPSDPKVMTWVRSH----VHRFFVLPREFDFVRLSWGPVVELA 252 >gi|71894629|ref|YP_278737.1| ribonuclease HII [Mycoplasma synoviae 53] Length = 237 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 76/187 (40%), Gaps = 34/187 (18%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI 80 V GIDEVG G P++ A+ + + + G+ DSK +S +K ++++ I S Sbjct: 17 FVFGIDEVGVGEFFTPLIATAVYVPKDKLEILKNLGVKDSKLLSDEKIKKVFNDIKSHIQ 76 Query: 81 ISISSASHQYID----KHNIHKATLDAIYHAVENLQVIP---RSALIDG--------RSI 125 + + S + + K N ++ A A+ NL+ +ID Sbjct: 77 YASALISQKSYNILFTKFNANEIKFLAHAEAINNLRKKVKKSELLIIDAYVNSDPSFNKY 136 Query: 126 PEDL-----------PCQAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP--D 170 E + P + I K +S + +AAASI+A+ M+ +++P Sbjct: 137 YEKIIVSYKDLYGFSPWKEKIAILKKAESHYIEVAAASIVARYELLLQMQKMQEEFPKAK 196 Query: 171 YGFDSHV 177 + S+ Sbjct: 197 FNLASNK 203 >gi|50310553|ref|XP_455296.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49644432|emb|CAG98004.1| KLLA0F04774p [Kluyveromyces lactis] Length = 304 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 89/235 (37%), Gaps = 41/235 (17%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-----PFGINDSKKISH 65 H E+ + E + G+DE GRG + GP+V +G +DSKK++ Sbjct: 33 HSEVPKSILESTDEIILGVDEAGRGPVMGPMVYGISYCTRQYEKDVICKYGFDDSKKLTD 92 Query: 66 KKREELYEKITSSAIISISSASHQY--------------IDKHNIHKATLDAIYHAVENL 111 R++L+ I I + A+ +N+++ D ++++ Sbjct: 93 PVRQKLFAMIYGGEIDGVGYATTSITACDISSGMFRFPPEKNYNLNEQAHDVTIALIDDV 152 Query: 112 ---QVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDR 159 V +D P + ++ K DSI ++ AS++AKVTRD Sbjct: 153 LKSGVKVGHVYVDTVGPPISYQKKLESIFPQCKFTVAKKADSIYPIVSVASVVAKVTRDI 212 Query: 160 LMRIAHKKYPDYGFDSHVGYPTA-KHQQVIKEK-----GPSCI-HRLTFRPLRNL 207 ++ K + GYP K Q ++ + G S R +++ + Sbjct: 213 ILSQCKKTEDEI---LGSGYPGDSKTVQWLRNEMKPLMGWSPYMVRFSWQTCATM 264 >gi|144575201|gb|AAZ44026.2| ribonuclease HII [Mycoplasma synoviae 53] Length = 242 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 76/187 (40%), Gaps = 34/187 (18%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI 80 V GIDEVG G P++ A+ + + + G+ DSK +S +K ++++ I S Sbjct: 22 FVFGIDEVGVGEFFTPLIATAVYVPKDKLEILKNLGVKDSKLLSDEKIKKVFNDIKSHIQ 81 Query: 81 ISISSASHQYID----KHNIHKATLDAIYHAVENLQVIP---RSALIDG--------RSI 125 + + S + + K N ++ A A+ NL+ +ID Sbjct: 82 YASALISQKSYNILFTKFNANEIKFLAHAEAINNLRKKVKKSELLIIDAYVNSDPSFNKY 141 Query: 126 PEDL-----------PCQAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP--D 170 E + P + I K +S + +AAASI+A+ M+ +++P Sbjct: 142 YEKIIVSYKDLYGFSPWKEKIAILKKAESHYIEVAAASIVARYELLLQMQKMQEEFPKAK 201 Query: 171 YGFDSHV 177 + S+ Sbjct: 202 FNLASNK 208 >gi|194017282|ref|ZP_03055894.1| ribonuclease hiii [Bacillus pumilus ATCC 7061] gi|194011150|gb|EDW20720.1| ribonuclease hiii [Bacillus pumilus ATCC 7061] Length = 307 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 46/196 (23%), Positives = 78/196 (39%), Gaps = 30/196 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79 V G DEVG G GP+ V A +D + + G+ DSK + + + + + + Sbjct: 93 MSVIGSDEVGTGDYFGPMTVCAAYVDASQLALMKELGVKDSKGLKDPQIINIAKDLIKTI 152 Query: 80 IISISSASHQYID---KHNIHKATLDAIYH------AVENL-QVIPRSALIDGRSIP--- 126 S+ ++ + + + + + A+ H +E L P + LID + P Sbjct: 153 PFSLLVLRNEKYNAMQEKGMSQGKMKALLHNQVITSVLEKLDGKQPEAILIDQFAEPGIY 212 Query: 127 -------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 + + + + K + I LS+AAASIIA+ M K GFD G Sbjct: 213 FKHLAGKKIIRERTYFSTKAEGIHLSVAAASIIARYAFLIEMDKLSK---AAGFDIPKGA 269 Query: 180 P---TAKHQQVIKEKG 192 ++IK G Sbjct: 270 GPHVDKAAAKLIKLHG 285 >gi|315151447|gb|EFT95463.1| ribonuclease HIII [Enterococcus faecalis TX0012] Length = 305 Score = 71.6 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 46/197 (23%), Positives = 76/197 (38%), Gaps = 29/197 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 89 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148 Query: 78 SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128 + + ++ + T+ A+ L P LID + + Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNTVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208 Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + F V KG+ +++AAASII++ + K+ + GF Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 265 Query: 178 GYPTAKHQQV--IKEKG 192 G + Q I +KG Sbjct: 266 GAGSKSDQVAARILKKG 282 >gi|284048370|ref|YP_003398709.1| ribonuclease HIII [Acidaminococcus fermentans DSM 20731] gi|283952591|gb|ADB47394.1| ribonuclease HIII [Acidaminococcus fermentans DSM 20731] Length = 317 Score = 71.6 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 51/200 (25%), Positives = 85/200 (42%), Gaps = 35/200 (17%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS 77 +W G DE G+G GP+ VAA+ LD +GI DSK ++ K L EKI Sbjct: 106 GLW--CGSDESGKGDYFGPLAVAAVCLDLAAARQYAAWGICDSKALTDGKIRLLAEKIRQ 163 Query: 78 SAIIS-ISSASHQYID---------KHNIHKATLDAIYHA---VENLQVIPRSALIDGR- 123 +A + ++ + K N++ HA V R AL+D Sbjct: 164 TARAHTVLVLKPRFYNQRYAQLKARKQNLNHLLASGHIHALGRVIQQVPECRFALVDQFT 223 Query: 124 -------SIPEDLPC-QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 ++ P + + KG++ +++AAASI+A RD + + + GF Sbjct: 224 RHNAIASTLETGFPGLKVYQQPKGEA-DMAVAAASILA---RDAFVEVMDQLSAQAGFPL 279 Query: 176 HVGYP---TAKHQQVIKEKG 192 G TA +++++E+G Sbjct: 280 PKGGGDQATAAARKLVREQG 299 >gi|156842375|ref|XP_001644555.1| hypothetical protein Kpol_1003p2 [Vanderwaltozyma polyspora DSM 70294] gi|156115201|gb|EDO16697.1| hypothetical protein Kpol_1003p2 [Vanderwaltozyma polyspora DSM 70294] Length = 312 Score = 71.6 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 78/230 (33%), Gaps = 50/230 (21%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN------IPFGINDSKKISHKKREELYEKITSS 78 + G+DE GRG + GP+V + +DSKK++ R L+ K+ Sbjct: 37 VILGVDEAGRGPVMGPMVYGISYCTKEYQDTVLIPKYAFDDSKKLTDNIRRNLFSKMYDQ 96 Query: 79 ----------------------AIISISSASHQYIDKHNIHKATLDAIYHAVENL---QV 113 IS + +N+++ D + ++ L V Sbjct: 97 NGDGTGEIEIDGVGYATTAITPVDISSGMLRYPPSQNYNLNEQAHDVTMNLIQGLVEKGV 156 Query: 114 IPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIA 164 +D P + K DS+ ++ AS++AKVTRD ++ Sbjct: 157 TIDHVYVDTVGPPVSYQKKLETRFPNIKFTVAKKADSLYCVVSVASVVAKVTRDIILEQM 216 Query: 165 HKKYPDYGFDSHVGYPT-AKHQQVIKEK------GPSCIHRLTFRPLRNL 207 + GYP+ K + + P + R +++ + L Sbjct: 217 KSNENEI---LGSGYPSDPKTTAWLAKNQKQLFAWPQSLVRFSWQTCQTL 263 >gi|256762264|ref|ZP_05502844.1| ribonuclease HIII [Enterococcus faecalis T3] gi|256683515|gb|EEU23210.1| ribonuclease HIII [Enterococcus faecalis T3] Length = 306 Score = 71.6 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 90 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLAHVIKE 149 Query: 78 SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128 + + ++ + + A+ L P LID + + Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209 Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + F V KG+ +++AAASII++ + K+ + GF Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 266 Query: 178 GYPTAKHQQV--IKEKG 192 G + Q I +KG Sbjct: 267 GAGSKSDQVAARILKKG 283 >gi|330444312|ref|YP_004377298.1| ribonuclease HIII [Chlamydophila pecorum E58] gi|328807422|gb|AEB41595.1| ribonuclease HIII [Chlamydophila pecorum E58] Length = 298 Score = 71.6 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 24/172 (13%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN-----DSKKISHKKREELYEK 74 E+N+ P G+DE G+G GP+ +A + I + DSK + L + Sbjct: 82 EQNLRPRIGVDESGKGDFFGPLCIAGVYAPDKRILQELYKTKIQDSKTLRDTTILSLAKT 141 Query: 75 ITSSAIISISSASHQYIDKH---NIHKATLDAIYHA--VENLQVIPR---SALIDGRSIP 126 I S + + + ++ + L A HA ++NL P A+ D + Sbjct: 142 IRSLCTYDVMTLYPEKYNELYGKFRNLNALLAWGHATVIDNLAPCPAQEVFAISDQFASS 201 Query: 127 EDLPCQAFA----------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 E L +A K ++ + +AAASI+A+ M+ Y Sbjct: 202 EQLLLEALKKKNSEILLIQKTKAEA-DIVVAAASILAREAFITSMKKLEALY 252 >gi|294780117|ref|ZP_06745490.1| ribonuclease HIII [Enterococcus faecalis PC1.1] gi|307268535|ref|ZP_07549908.1| ribonuclease HIII [Enterococcus faecalis TX4248] gi|294452792|gb|EFG21221.1| ribonuclease HIII [Enterococcus faecalis PC1.1] gi|306515131|gb|EFM83673.1| ribonuclease HIII [Enterococcus faecalis TX4248] gi|315034079|gb|EFT46011.1| ribonuclease HIII [Enterococcus faecalis TX0017] gi|315036747|gb|EFT48679.1| ribonuclease HIII [Enterococcus faecalis TX0027] gi|323480498|gb|ADX79937.1| ribonuclease HIII [Enterococcus faecalis 62] Length = 305 Score = 71.6 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 89 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148 Query: 78 SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128 + + ++ + + A+ L P LID + + Sbjct: 149 RIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208 Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + F V KG+ +++AAASII++ + K+ + GF Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 265 Query: 178 GYPTAKHQQV--IKEKG 192 G + Q I +KG Sbjct: 266 GAGSKSDQVAARILKKG 282 >gi|256958755|ref|ZP_05562926.1| ribonuclease HIII [Enterococcus faecalis DS5] gi|257078784|ref|ZP_05573145.1| ribonuclease HIII [Enterococcus faecalis JH1] gi|256949251|gb|EEU65883.1| ribonuclease HIII [Enterococcus faecalis DS5] gi|256986814|gb|EEU74116.1| ribonuclease HIII [Enterococcus faecalis JH1] Length = 306 Score = 71.6 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 90 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149 Query: 78 SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128 + + ++ + + A+ L P LID + + Sbjct: 150 RIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209 Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + F V KG+ +++AAASII++ + K+ + GF Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 266 Query: 178 GYPTAKHQQV--IKEKG 192 G + Q I +KG Sbjct: 267 GAGSKSDQVAARILKKG 283 >gi|27467751|ref|NP_764388.1| ribonuclease HIII [Staphylococcus epidermidis ATCC 12228] gi|73917854|sp|Q8CPL8|RNH3_STAES RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|27315295|gb|AAO04430.1|AE016746_220 putative ribonuclease HIII [Staphylococcus epidermidis ATCC 12228] Length = 308 Score = 71.2 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 28/171 (16%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS---SA 79 G DE G G GP+ V A + ++I G++DSKK++ K +L E++ + + Sbjct: 91 IGSDEAGSGDYFGPLTVCAAYVSQSHIKILKELGVDDSKKLNDTKIVDLAEQLITFIPHS 150 Query: 80 IISISSASHQYIDKHNIHKATLDAIYH--AVENL-----QVIPRSALIDGRSIPE----- 127 ++++ + + + + A+ H A++N+ Q +ID + E Sbjct: 151 LLTLDNVKYNERQSIGWSQVKMKAVLHNEAIKNVLQKIEQDQLDYIVIDQFAKREVYQHY 210 Query: 128 -----DLPCQAFAVIKGDSISLSIAAASIIAKVTR----DRLMRIAHKKYP 169 P + KG+S SL+IA ASII++ D + + H + P Sbjct: 211 ALSALPFPDKTKFETKGESKSLAIAVASIISRYAFVKHMDHISKKLHMEIP 261 >gi|329577099|gb|EGG58572.1| ribonuclease HIII [Enterococcus faecalis TX1467] Length = 289 Score = 71.2 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 73 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 132 Query: 78 SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128 + + ++ + + A+ L P LID + + Sbjct: 133 RIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 192 Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + F V KG+ +++AAASII++ + K+ + GF Sbjct: 193 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 249 Query: 178 GYPTAKHQQV--IKEKG 192 G + Q I +KG Sbjct: 250 GAGSKSDQVAARILKKG 266 >gi|149183057|ref|ZP_01861510.1| ribonuclease HIII [Bacillus sp. SG-1] gi|148849238|gb|EDL63435.1| ribonuclease HIII [Bacillus sp. SG-1] Length = 309 Score = 71.2 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 45/182 (24%), Positives = 71/182 (39%), Gaps = 28/182 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 + G DEVG G GP+ V A + IP G+ DSK ++ +K + + + S Sbjct: 92 MSLIGSDEVGTGDFFGPITVVAAYVKKEQIPLLKELGVKDSKNLNDEKIIAIAKNLLSVI 151 Query: 80 IISISSASHQYID---KHNIHKATLDA--IYHAVENL-----QVIPRSALIDG----RSI 125 S+ + + + + + + A A+ NL P + LID + Sbjct: 152 PYSLLICHNDKYNALQEKGMSQGKIKALLHNRAILNLLQKIAPEKPEAVLIDQFAEENTY 211 Query: 126 PEDLPCQ-------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + L Q KG+SI LS+AAASI+A+ + M GF G Sbjct: 212 YKYLAGQKEIHRENVLFSTKGESIHLSVAAASILARYAFVKEMDKLSALA---GFPIPKG 268 Query: 179 YP 180 Sbjct: 269 AG 270 >gi|170290760|ref|YP_001737576.1| ribonuclease HII/HIII [Candidatus Korarchaeum cryptofilum OPF8] gi|170174840|gb|ACB07893.1| ribonuclease HII/HIII [Candidatus Korarchaeum cryptofilum OPF8] Length = 167 Score = 71.2 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 18/146 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAIIS 82 G DE G+G GP+VVAA+ LD F G+ +SK + K+ EEL I +I S Sbjct: 8 IGSDEAGKGEREGPIVVAAVALDGEGRKFLRARGLLESKSVPKKRIEELAGLIREVSISS 67 Query: 83 -ISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 + S + + ++ N++ + V+ + + I S +AF+ I Sbjct: 68 HVKRVSPEELRELWNRGNLNDLLSIWHFEVVKEVLKDTEACRIIVDSFDRRRLEEAFSQI 127 Query: 138 KG---------DSISLSIAAASIIAK 154 KG D S+AAASI+AK Sbjct: 128 KGIEVIIESGADLKYPSVAAASILAK 153 >gi|229546057|ref|ZP_04434782.1| ribonuclease HIII [Enterococcus faecalis TX1322] gi|256852909|ref|ZP_05558279.1| ribonuclease HIII [Enterococcus faecalis T8] gi|307291247|ref|ZP_07571131.1| ribonuclease HIII [Enterococcus faecalis TX0411] gi|229308830|gb|EEN74817.1| ribonuclease HIII [Enterococcus faecalis TX1322] gi|256711368|gb|EEU26406.1| ribonuclease HIII [Enterococcus faecalis T8] gi|306497478|gb|EFM67011.1| ribonuclease HIII [Enterococcus faecalis TX0411] gi|315030923|gb|EFT42855.1| ribonuclease HIII [Enterococcus faecalis TX4000] Length = 305 Score = 71.2 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 46/197 (23%), Positives = 75/197 (38%), Gaps = 29/197 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 89 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148 Query: 78 SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128 + + +K + + A+ L P LID + + Sbjct: 149 LIPYKLLIVEPKKYNKIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208 Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + F V KG+ +++AAASII++ + K+ + GF Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 265 Query: 178 GYPTAKHQQV--IKEKG 192 G + Q I +KG Sbjct: 266 GAGSKSDQVAARILKKG 282 >gi|315282003|ref|ZP_07870510.1| ribonuclease hiii [Listeria marthii FSL S4-120] gi|313614348|gb|EFR87985.1| ribonuclease hiii [Listeria marthii FSL S4-120] Length = 293 Score = 70.9 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 25/154 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 78 VVGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPIVPH 137 Query: 79 AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123 +++ + + + + +++ + A A+EN+ V P + LID Sbjct: 138 SVLLCPNPKYNELQQRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYR 197 Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 P + F K + + LS+AAASIIA+ Sbjct: 198 YLAQEPSIVREDVFFATKAEGLHLSVAAASIIAR 231 >gi|319651783|ref|ZP_08005909.1| ribonuclease [Bacillus sp. 2_A_57_CT2] gi|317396602|gb|EFV77314.1| ribonuclease [Bacillus sp. 2_A_57_CT2] Length = 312 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 47/195 (24%), Positives = 75/195 (38%), Gaps = 31/195 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G GP+ V A + + IP G+ DSK + +K E+ ++I Sbjct: 94 VIGSDEVGTGDYFGPITVVAAYVKKDQIPLLKELGVKDSKNLGDEKIIEIAKQIKDIVPY 153 Query: 82 SISSASHQYIDKHNIH-----KATLDAIYHAVENL-----QVIPRSALIDGRSIPEDLPC 131 S+ + ++ +K K A+ ++ P + LID + E Sbjct: 154 SLLTLHNEKYNKLQQSGMSQGKIKALLHNQAIGHVLGKIAPEKPEAILIDQFAKEEVYFN 213 Query: 132 -----------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + F K + I L++AAASI+A+ R K GF G Sbjct: 214 YLKNQQTIQRERVFFSTKAEGIHLAVAAASILARYAFVRHFENLSTKA---GFRLTKGAG 270 Query: 181 TAKHQQV---IKEKG 192 + I++KG Sbjct: 271 PKVDEAAARLIRDKG 285 >gi|157693280|ref|YP_001487742.1| ribonuclease HIII [Bacillus pumilus SAFR-032] gi|166991072|sp|A8FG15|RNH3_BACP2 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|157682038|gb|ABV63182.1| ribonuclease H [Bacillus pumilus SAFR-032] Length = 307 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 30/196 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79 V G DEVG G GP+ V A +D +++ G+ DSK + + + + + + Sbjct: 93 MSVIGSDEVGTGDYFGPITVCAAYVDASHLALMKELGVKDSKGLKDPQIINIAKDLIKTI 152 Query: 80 IISISSASHQYID---KHNIHKATLDAIYH------AVENL-QVIPRSALIDGRSIP--- 126 S+ ++ + + + + + A+ H A+E L P + LID + P Sbjct: 153 PFSLLVLRNEKYNAMQEKGMSQGKMKALLHNQVITSALEKLDGKQPEAILIDQFAEPGIY 212 Query: 127 -------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 + + + + K + I LS+AAASIIA+ M + GF+ G Sbjct: 213 FKHLAGKKIIRERTYFSTKAEGIHLSVAAASIIARYAFLIEMDKLSE---AAGFEIPKGA 269 Query: 180 P---TAKHQQVIKEKG 192 ++IK G Sbjct: 270 GPHVDKAAAKLIKLHG 285 >gi|71409033|ref|XP_806884.1| ribonuclease H [Trypanosoma cruzi strain CL Brener] gi|70870756|gb|EAN85033.1| ribonuclease H, putative [Trypanosoma cruzi] Length = 324 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 86/223 (38%), Gaps = 51/223 (22%) Query: 26 VAGIDEVGRGALAGPVVV--AAIILDPNNIPF---GINDSKKISHKKREELYEKITS--- 77 V GIDE GRG + GP+V A I L ++ G+NDSK + +R+++ K+ Sbjct: 41 VLGIDEAGRGPVIGPMVYTGAMIALHEHDRLLEYCGVNDSKLLGENQRKDVLCKLQKLKT 100 Query: 78 ----SAIISISSASHQY--IDKHNIHKATLDAIYHAVENLQVIP----RSALIDGRSIPE 127 + ++ + + I N++ + D + + A ID PE Sbjct: 101 FSTFTVFVTPAEIAAAMTGIHGKNLNTLSHDTAIAIISKATLEATGMLCGAYIDTVGPPE 160 Query: 128 DLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + K ++ +AAAS++AKV RDR + G D G Sbjct: 161 SYQQRLSGRFPHLRITVAKKAETKFPIVAAASVVAKVERDRHIERL-------GIDVGSG 213 Query: 179 YPT-AKHQQVIKEKGPSCIHRL------------TFRPLRNLS 208 YP+ K ++ +HR ++ P+ L+ Sbjct: 214 YPSDPKVMTWVRSH----VHRFFVLPREFDFVRLSWGPVVELA 252 >gi|89098885|ref|ZP_01171765.1| ribonuclease HIII [Bacillus sp. NRRL B-14911] gi|89086289|gb|EAR65410.1| ribonuclease HIII [Bacillus sp. NRRL B-14911] Length = 348 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 70/195 (35%), Gaps = 31/195 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G GP+ V A ++P G+ DSK + + + ++I Sbjct: 133 VIGSDEVGTGDYFGPITVVAAYAKKESLPLLKELGVKDSKHLKDDQIIRIAKEIKEVVPY 192 Query: 82 SISSASHQYIDKHNIH-----KATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL-- 129 S+ + + ++ K A+ N+ P + LID + + Sbjct: 193 SLLTLKNSKYNQLQQSGMSQGKIKALLHNQAIGNVLKKMAPEKPEAILIDQFAKEDVYYR 252 Query: 130 ---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 F K + I LS+AAASI+A+ R ++ GF G Sbjct: 253 HLQGQSVIQRENVFFSTKAEGIHLSVAAASILARYAFLRYFDKLSEEA---GFTLPKGAG 309 Query: 181 TAKHQQV---IKEKG 192 + IK KG Sbjct: 310 AQVDKAAARLIKAKG 324 >gi|269302868|gb|ACZ32968.1| ribonuclease HIII [Chlamydophila pneumoniae LPCoLN] Length = 298 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 68/187 (36%), Gaps = 33/187 (17%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAI------ILDPNNIPFGINDSKKISHKKREELYE 73 E+++ P G+DE G+G GP+ +A + IL + DSK + K L Sbjct: 82 EQDLRPRLGVDESGKGDFFGPLCIAGVYASNAEILKKLYEN-KVQDSKNLKDTKIASLAR 140 Query: 74 KITSSAIISISSASHQYIDKH---NIHKATLDAIYHA--VENLQVIPRSALIDGRSIPED 128 I S + + + ++ + TL A HA + NL P D +I + Sbjct: 141 IIRSLCVCDVIILYPEKYNELYGKFQNLNTLLAWAHATIINNLAPKPA---GDVFAISDQ 197 Query: 129 LPCQAFAVIKG---------------DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 + ++K + +AAASI+A RD ++ K Y Sbjct: 198 FAASEYTLLKALQKKETDITLIQKPRAEQDVVVAAASILA---RDAFVQSIQKLEEQYQV 254 Query: 174 DSHVGYP 180 G Sbjct: 255 QLPKGAG 261 >gi|229550247|ref|ZP_04438972.1| ribonuclease HIII [Enterococcus faecalis ATCC 29200] gi|300859668|ref|ZP_07105756.1| ribonuclease HIII [Enterococcus faecalis TUSoD Ef11] gi|307277609|ref|ZP_07558701.1| ribonuclease HIII [Enterococcus faecalis TX2134] gi|312952263|ref|ZP_07771138.1| ribonuclease HIII [Enterococcus faecalis TX0102] gi|229304685|gb|EEN70681.1| ribonuclease HIII [Enterococcus faecalis ATCC 29200] gi|300850486|gb|EFK78235.1| ribonuclease HIII [Enterococcus faecalis TUSoD Ef11] gi|306505874|gb|EFM75052.1| ribonuclease HIII [Enterococcus faecalis TX2134] gi|310629647|gb|EFQ12930.1| ribonuclease HIII [Enterococcus faecalis TX0102] gi|315153226|gb|EFT97242.1| ribonuclease HIII [Enterococcus faecalis TX0031] gi|315155995|gb|EFU00012.1| ribonuclease HIII [Enterococcus faecalis TX0043] gi|315157833|gb|EFU01850.1| ribonuclease HIII [Enterococcus faecalis TX0312] gi|315166764|gb|EFU10781.1| ribonuclease HIII [Enterococcus faecalis TX1341] Length = 305 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 76/197 (38%), Gaps = 29/197 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 89 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148 Query: 78 SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128 + + ++ + + A+ L P LID + ++ Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPEKN 208 Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + F V KG+ +++AAASII++ + K+ + GF Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 265 Query: 178 GYPTAKHQQV--IKEKG 192 G + Q I +KG Sbjct: 266 GAGSKSDQVAARILKKG 282 >gi|255973022|ref|ZP_05423608.1| ribonuclease HIII [Enterococcus faecalis T1] gi|257422845|ref|ZP_05599835.1| ribonuclease HIII [Enterococcus faecalis X98] gi|255964040|gb|EET96516.1| ribonuclease HIII [Enterococcus faecalis T1] gi|257164669|gb|EEU94629.1| ribonuclease HIII [Enterococcus faecalis X98] Length = 306 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 76/197 (38%), Gaps = 29/197 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 90 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149 Query: 78 SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128 + + ++ + + A+ L P LID + ++ Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPEKN 209 Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + F V KG+ +++AAASII++ + K+ + GF Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 266 Query: 178 GYPTAKHQQV--IKEKG 192 G + Q I +KG Sbjct: 267 GAGSKSDQVAARILKKG 283 >gi|227499052|ref|ZP_03929189.1| ribonuclease HIII [Acidaminococcus sp. D21] gi|226904501|gb|EEH90419.1| ribonuclease HIII [Acidaminococcus sp. D21] Length = 320 Score = 70.5 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 89/211 (42%), Gaps = 36/211 (17%) Query: 27 AGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI------T 76 AG DE G+G GP+ VAA+ILD + G+ DSK +S K L ++ + Sbjct: 114 AGSDESGKGDYLGPLCVAAVILDEIGAKKLLALGVRDSKTLSDAKIRRLAPQVYAIAKAS 173 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPR--SALIDGRSIPEDLPCQA 133 ++A + + +Y N++ A+ L+ +P AL+D + + + Sbjct: 174 AAAALMPQQYNEEYEKAQNLNPLLSTYHIGAIMTVLKKVPECHFALVDQFTRSPYIKNEL 233 Query: 134 FAVIKGDSIS--------LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 + G S+ +++AAASI+A+ + M ++ GF+ G + Sbjct: 234 ERAVPGLSVYSHTKGEADMAVAAASILARSLFLKKMEELSQEA---GFELPFGGGAQATR 290 Query: 186 QV---IKEKG------PSCIHRLTFRPLRNL 207 I+++G + +H F +NL Sbjct: 291 AAEKIIQQEGRERLGHYAKLH---FANTKNL 318 >gi|315169945|gb|EFU13962.1| ribonuclease HIII [Enterococcus faecalis TX1342] Length = 305 Score = 70.5 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 89 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148 Query: 78 SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128 + + ++ + + A+ L P LID + + Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTQPEGILIDQFTPENN 208 Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + F V KG+ +++AAASII++ + K+ + GF Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 265 Query: 178 GYPTAKHQQV--IKEKG 192 G + Q I +KG Sbjct: 266 GAGSKSDQVAARILKKG 282 >gi|227518526|ref|ZP_03948575.1| ribonuclease HIII [Enterococcus faecalis TX0104] gi|227074008|gb|EEI11971.1| ribonuclease HIII [Enterococcus faecalis TX0104] Length = 305 Score = 70.5 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 89 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148 Query: 78 SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128 + + ++ + + A+ L P LID + + Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208 Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + F V KG+ +++AAASII++ + K+ + GF Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 265 Query: 178 GYPTAKHQQV--IKEKG 192 G + Q I +KG Sbjct: 266 GAGSKSDQVAARILKKG 282 >gi|315027498|gb|EFT39430.1| ribonuclease HIII [Enterococcus faecalis TX2137] Length = 305 Score = 70.5 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 89 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148 Query: 78 SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128 + + ++ + + A+ L P LID + + Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208 Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + F V KG+ +++AAASII++ + K+ + GF Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 265 Query: 178 GYPTAKHQQV--IKEKG 192 G + Q I +KG Sbjct: 266 GAGSKSDQVAARILKKG 282 >gi|257086614|ref|ZP_05580975.1| ribonuclease HIII [Enterococcus faecalis D6] gi|256994644|gb|EEU81946.1| ribonuclease HIII [Enterococcus faecalis D6] Length = 306 Score = 70.5 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 90 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149 Query: 78 SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128 + + ++ + + A+ L P LID + + Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209 Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + F V KG+ +++AAASII++ + K+ + GF Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 266 Query: 178 GYPTAKHQQV--IKEKG 192 G + Q I +KG Sbjct: 267 GAGSKSDQVAARILKKG 283 >gi|307279081|ref|ZP_07560139.1| ribonuclease HIII [Enterococcus faecalis TX0860] gi|306504206|gb|EFM73418.1| ribonuclease HIII [Enterococcus faecalis TX0860] Length = 305 Score = 70.5 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 89 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148 Query: 78 SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128 + + ++ + + A+ L P LID + + Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKAALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208 Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + F V KG+ +++AAASII++ + K+ + GF Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 265 Query: 178 GYPTAKHQQV--IKEKG 192 G + Q I +KG Sbjct: 266 GAGSKSDQVAARILKKG 282 >gi|315174353|gb|EFU18370.1| ribonuclease HIII [Enterococcus faecalis TX1346] Length = 305 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 89 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148 Query: 78 SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128 + + ++ + + A+ L P LID + + Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208 Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + F V KG+ +++AAASII++ + K+ + GF Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 265 Query: 178 GYPTAKHQQV--IKEKG 192 G + Q I +KG Sbjct: 266 GAGSKSDQVAARILKKG 282 >gi|257085473|ref|ZP_05579834.1| ribonuclease HIII [Enterococcus faecalis Fly1] gi|256993503|gb|EEU80805.1| ribonuclease HIII [Enterococcus faecalis Fly1] Length = 306 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 90 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149 Query: 78 SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128 + + ++ + + A+ L P LID + + Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209 Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + F V KG+ +++AAASII++ + K+ + GF Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 266 Query: 178 GYPTAKHQQV--IKEKG 192 G + Q I +KG Sbjct: 267 GAGSKSDQVAARILKKG 283 >gi|255976061|ref|ZP_05426647.1| ribonuclease HIII [Enterococcus faecalis T2] gi|255968933|gb|EET99555.1| ribonuclease HIII [Enterococcus faecalis T2] Length = 306 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 90 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149 Query: 78 SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128 + + ++ + + A+ L P LID + + Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKAALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209 Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + F V KG+ +++AAASII++ + K+ + GF Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 266 Query: 178 GYPTAKHQQV--IKEKG 192 G + Q I +KG Sbjct: 267 GAGSKSDQVAARILKKG 283 >gi|293383165|ref|ZP_06629082.1| ribonuclease HIII [Enterococcus faecalis R712] gi|293387681|ref|ZP_06632226.1| ribonuclease HIII [Enterococcus faecalis S613] gi|312899345|ref|ZP_07758678.1| ribonuclease HIII [Enterococcus faecalis TX0470] gi|312907246|ref|ZP_07766237.1| ribonuclease HIII [Enterococcus faecalis DAPTO 512] gi|312909864|ref|ZP_07768712.1| ribonuclease HIII [Enterococcus faecalis DAPTO 516] gi|291079504|gb|EFE16868.1| ribonuclease HIII [Enterococcus faecalis R712] gi|291082870|gb|EFE19833.1| ribonuclease HIII [Enterococcus faecalis S613] gi|310626274|gb|EFQ09557.1| ribonuclease HIII [Enterococcus faecalis DAPTO 512] gi|311289822|gb|EFQ68378.1| ribonuclease HIII [Enterococcus faecalis DAPTO 516] gi|311293496|gb|EFQ72052.1| ribonuclease HIII [Enterococcus faecalis TX0470] gi|327534888|gb|AEA93722.1| ribonuclease H [Enterococcus faecalis OG1RF] Length = 305 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 89 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148 Query: 78 SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128 + + ++ + + A+ L P LID + + Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208 Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + F V KG+ +++AAASII++ + K+ + GF Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 265 Query: 178 GYPTAKHQQV--IKEKG 192 G + Q I +KG Sbjct: 266 GAGSKSDQVAARILKKG 282 >gi|256962140|ref|ZP_05566311.1| ribonuclease HIII [Enterococcus faecalis Merz96] gi|256952636|gb|EEU69268.1| ribonuclease HIII [Enterococcus faecalis Merz96] Length = 306 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 90 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149 Query: 78 SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128 + + ++ + + A+ L P LID + + Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209 Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + F V KG+ +++AAASII++ + K+ + GF Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 266 Query: 178 GYPTAKHQQV--IKEKG 192 G + Q I +KG Sbjct: 267 GAGSKSDQVAARILKKG 283 >gi|256618846|ref|ZP_05475692.1| ribonuclease HIII [Enterococcus faecalis ATCC 4200] gi|256598373|gb|EEU17549.1| ribonuclease HIII [Enterococcus faecalis ATCC 4200] Length = 306 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 90 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149 Query: 78 SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128 + + ++ + + A+ L P LID + + Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209 Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + F V KG+ +++AAASII++ + K+ + GF Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 266 Query: 178 GYPTAKHQQV--IKEKG 192 G + Q I +KG Sbjct: 267 GAGSKSDQVAARILKKG 283 >gi|121534428|ref|ZP_01666251.1| ribonuclease HIII [Thermosinus carboxydivorans Nor1] gi|121306921|gb|EAX47840.1| ribonuclease HIII [Thermosinus carboxydivorans Nor1] Length = 306 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 47/199 (23%), Positives = 89/199 (44%), Gaps = 31/199 (15%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS----- 77 G DE G+G GP+V+AA+++D G+ DSK +S +K + L ++I Sbjct: 97 IGSDESGKGDFFGPLVIAAVMVDAATAAALTASGVRDSKLLSDEKAKVLAQRIREICHGR 156 Query: 78 SAIISISSASHQYI------DKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIPEDL 129 A++ I+ A + + + N++ A A+E + + R AL+D + + Sbjct: 157 FALVEITPAKYNVLYQRFRAEGKNLNHLLAWAHASAIEEVLTRTPCRFALVDKFADESLI 216 Query: 130 PCQAFA------VIKGDS--ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP- 180 + FA +++ ++++AAASI+A R+R + Y D G Sbjct: 217 RSRLFAKGREITLVQAPRAEKNIAVAAASILA---RERFLYWIELFRVQYKMDFPKGASA 273 Query: 181 --TAKHQQVIKEKGPSCIH 197 T + ++ G +C+H Sbjct: 274 AVTDAARAFVQRYGKNCLH 292 >gi|307273446|ref|ZP_07554691.1| ribonuclease HIII [Enterococcus faecalis TX0855] gi|307288434|ref|ZP_07568422.1| ribonuclease HIII [Enterococcus faecalis TX0109] gi|312904016|ref|ZP_07763184.1| ribonuclease HIII [Enterococcus faecalis TX0635] gi|306500605|gb|EFM69934.1| ribonuclease HIII [Enterococcus faecalis TX0109] gi|306509973|gb|EFM78998.1| ribonuclease HIII [Enterococcus faecalis TX0855] gi|310632492|gb|EFQ15775.1| ribonuclease HIII [Enterococcus faecalis TX0635] gi|315147746|gb|EFT91762.1| ribonuclease HIII [Enterococcus faecalis TX4244] gi|315165480|gb|EFU09497.1| ribonuclease HIII [Enterococcus faecalis TX1302] gi|315578363|gb|EFU90554.1| ribonuclease HIII [Enterococcus faecalis TX0630] Length = 305 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 89 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148 Query: 78 SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128 + + ++ + + A+ L P LID + + Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208 Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + F V KG+ +++AAASII++ + K+ + GF Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 265 Query: 178 GYPTAKHQQV--IKEKG 192 G + Q I +KG Sbjct: 266 GAGSKSDQVAARILKKG 282 >gi|256965338|ref|ZP_05569509.1| ribonuclease HIII [Enterococcus faecalis HIP11704] gi|257089671|ref|ZP_05584032.1| ribonuclease HIII [Enterococcus faecalis CH188] gi|256955834|gb|EEU72466.1| ribonuclease HIII [Enterococcus faecalis HIP11704] gi|256998483|gb|EEU85003.1| ribonuclease HIII [Enterococcus faecalis CH188] Length = 306 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 90 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149 Query: 78 SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128 + + ++ + + A+ L P LID + + Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209 Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + F V KG+ +++AAASII++ + K+ + GF Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 266 Query: 178 GYPTAKHQQV--IKEKG 192 G + Q I +KG Sbjct: 267 GAGSKSDQVAARILKKG 283 >gi|257415885|ref|ZP_05592879.1| ribonuclease HIII [Enterococcus faecalis AR01/DG] gi|257157713|gb|EEU87673.1| ribonuclease HIII [Enterococcus faecalis ARO1/DG] Length = 306 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 90 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149 Query: 78 SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128 + + ++ + + A+ L P LID + + Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209 Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + F V KG+ +++AAASII++ + K+ + GF Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 266 Query: 178 GYPTAKHQQV--IKEKG 192 G + Q I +KG Sbjct: 267 GAGSKSDQVAARILKKG 283 >gi|257082772|ref|ZP_05577133.1| ribonuclease HIII [Enterococcus faecalis E1Sol] gi|256990802|gb|EEU78104.1| ribonuclease HIII [Enterococcus faecalis E1Sol] Length = 306 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 90 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149 Query: 78 SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128 + + ++ + + A+ L P LID + + Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209 Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + F V KG+ +++AAASII++ + K+ + GF Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 266 Query: 178 GYPTAKHQQV--IKEKG 192 G + Q I +KG Sbjct: 267 GAGSKSDQVAARILKKG 283 >gi|112490233|pdb|2D0A|A Chain A, Crystal Structure Of Bst-Rnase Hiii gi|112490235|pdb|2D0B|A Chain A, Crystal Structure Of Bst-Rnase Hiii In Complex With Mg2+ gi|112490237|pdb|2D0C|A Chain A, Crystal Structure Of Bst-Rnase Hiii In Complex With Mn2+ gi|47522551|dbj|BAD20196.1| ribonuclease HIII [Geobacillus stearothermophilus] Length = 310 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 69/177 (38%), Gaps = 29/177 (16%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELY 72 + G DEVG G GP+VVAA +D +I G+ DSK+++ + + + Sbjct: 84 AAHQLGSLSAIGSDEVGTGDYFGPIVVAAAYVDRPHIAKIAALGVKDSKQLNDEAIKRIA 143 Query: 73 EKITSSAIISISSASHQYIDKHN------------IHKATLDAIYHAVENLQVIPRSALI 120 I + +++ + ++ +H TL + A+ P + +I Sbjct: 144 PAIMETVPHAVTVLDNPQYNRWQRSGMPQTKMKALLHNRTLVKLVDAIA--PAEPEAIII 201 Query: 121 DGR-----------SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 D + + + K +S+ +S+AAASIIA+ M + Sbjct: 202 DEFLKRDSYFRYLSDEDRIIRERVHCLPKAESVHVSVAAASIIARYVFLEEMEQLSR 258 >gi|300175420|emb|CBK20731.2| unnamed protein product [Blastocystis hominis] Length = 539 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 6/78 (7%) Query: 25 PVAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSSAI 80 + GIDE GRG + GP+V AA + G +DSKK + +R+ + I + Sbjct: 451 VIVGIDEAGRGPVVGPMVYAAAYWAKSKNEEISNLGFDDSKKFTSGQRDGFRKTIDETGS 510 Query: 81 IS--ISSASHQYIDKHNI 96 I I S S + I + + Sbjct: 511 IGYLIRSLSPKEISANML 528 >gi|293364827|ref|ZP_06611544.1| ribonuclease HIII [Streptococcus oralis ATCC 35037] gi|307703076|ref|ZP_07640023.1| ribonuclease HIII [Streptococcus oralis ATCC 35037] gi|291316277|gb|EFE56713.1| ribonuclease HIII [Streptococcus oralis ATCC 35037] gi|307623469|gb|EFO02459.1| ribonuclease HIII [Streptococcus oralis ATCC 35037] Length = 293 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 81/200 (40%), Gaps = 29/200 (14%) Query: 24 WPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKITS-- 77 +P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ + Sbjct: 78 FPMIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 78 --SAIISISSASHQYIDKH----NIHKATLDAIYHAVENLQVIPRSALIDGRSIPED--- 128 A++ S ++ I + ++ A + + V P +IDG + P++ Sbjct: 138 SHQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQKGVQPEKIVIDGFTSPKNYDK 197 Query: 129 --------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 P + K + L++A +SIIA RD + + G+ G Sbjct: 198 YLAQEANRFPNKITLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAG 254 Query: 181 TAKHQQV---IKEKGPSCIH 197 TA + ++ G +H Sbjct: 255 TASDKVASKILQAYGMKGLH 274 >gi|162447673|ref|YP_001620805.1| ribonuclease HIII [Acholeplasma laidlawii PG-8A] gi|161985780|gb|ABX81429.1| ribonuclease HIII [Acholeplasma laidlawii PG-8A] Length = 285 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 71/177 (40%), Gaps = 23/177 (12%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR 68 +++ + N + G DEVG G GPVVV + +I G+ DSK +++K+ Sbjct: 64 AIKSFLNITNYAAI-GSDEVGTGDALGPVVVCSAYASIEDIEFLEKLGVKDSKSMTNKEI 122 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS--------ALI 120 +L I + SI + + ++ L+ I + N +I + ++ Sbjct: 123 VKLGPVIANRLTHSIVILTPEKFNEQTQKGLNLNKIKALLHNHMIIKTTSKVEAAVPVIL 182 Query: 121 DGRSIPEDLPC----------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 D +P K +S+ LS+AAASIIA+ M KK Sbjct: 183 DQFCLPTHYFNYLKDEKLVYRDVEFYTKAESVHLSVAAASIIARYAFLVKMHQYSKK 239 >gi|70726822|ref|YP_253736.1| ribonuclease HIII [Staphylococcus haemolyticus JCSC1435] gi|123659928|sp|Q4L5E5|RNH3_STAHJ RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|68447546|dbj|BAE05130.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 310 Score = 69.7 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 80/201 (39%), Gaps = 30/201 (14%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI 75 N + G DE G G GP+ V A + N+ G++DSKK++ +K EL E++ Sbjct: 87 AYNHYNCIGSDEAGSGDYFGPLTVCAAYVSKENVKILKTLGVDDSKKLNDQKIIELAEQL 146 Query: 76 TSSAIISISSAS-HQYIDKHNIHKATLDA----IYHAVENLQVIP-----RSALIDGRSI 125 + S+ + +Y D+ I + + A++N+ +ID ++ Sbjct: 147 ITFIPHSLLTLDNPKYNDRQAIGWSQVKMKAELHNEAIKNVTQKINCNELNYIVIDQFAV 206 Query: 126 P----------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 P + KG+S SL+IAAASII++ + M K D Sbjct: 207 RGVYQRYALSSLPYPEKTKFETKGESKSLAIAAASIISRYAFVKHMDHISHKMKQ---DI 263 Query: 176 HVGYPTAKHQ---QVIKEKGP 193 G Q+I + G Sbjct: 264 PKGASNKVDLIAAQIIDKHGI 284 >gi|295112808|emb|CBL31445.1| ribonuclease HIII [Enterococcus sp. 7L76] gi|315145573|gb|EFT89589.1| ribonuclease HIII [Enterococcus faecalis TX2141] gi|315160341|gb|EFU04358.1| ribonuclease HIII [Enterococcus faecalis TX0645] Length = 305 Score = 69.7 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 89 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKSLGVRDSKELTDPQIIQLSHVIKE 148 Query: 78 SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128 + + ++ + + A+ L P LID + + Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208 Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + F V KG+ +++AAASII++ + K+ + GF Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 265 Query: 178 GYPTAKHQQV--IKEKG 192 G + Q I +KG Sbjct: 266 GAGSKSDQVAARILKKG 282 >gi|257419087|ref|ZP_05596081.1| ribonuclease HIII [Enterococcus faecalis T11] gi|257160915|gb|EEU90875.1| ribonuclease HIII [Enterococcus faecalis T11] Length = 306 Score = 69.7 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 90 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKSLGVRDSKELTDPQIIQLSHVIKE 149 Query: 78 SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128 + + ++ + + A+ L P LID + + Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209 Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + F V KG+ +++AAASII++ + K+ + GF Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 266 Query: 178 GYPTAKHQQV--IKEKG 192 G + Q I +KG Sbjct: 267 GAGSKSDQVAARILKKG 283 >gi|29375836|ref|NP_814990.1| ribonuclease HIII [Enterococcus faecalis V583] gi|227553052|ref|ZP_03983101.1| ribonuclease HIII [Enterococcus faecalis HH22] gi|81585389|sp|Q835V5|RNH3_ENTFA RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|29343298|gb|AAO81060.1| ribonuclease HIII [Enterococcus faecalis V583] gi|227177795|gb|EEI58767.1| ribonuclease HIII [Enterococcus faecalis HH22] gi|315575679|gb|EFU87870.1| ribonuclease HIII [Enterococcus faecalis TX0309B] gi|315579877|gb|EFU92068.1| ribonuclease HIII [Enterococcus faecalis TX0309A] Length = 305 Score = 69.7 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 29/197 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 89 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKSLGVRDSKELTDPQIIQLSHVIKE 148 Query: 78 SAIISISSASHQYIDKHNIHKATLDA----IYHAVENL-----QVIPRSALIDGRSIPED 128 + + ++ + + A+ L P LID + + Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208 Query: 129 L-----------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + F V KG+ +++AAASII++ + K+ + GF Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAA---FLEELDKESAELGFSVPS 265 Query: 178 GYPTAKHQQV--IKEKG 192 G + Q I +KG Sbjct: 266 GAGSKSDQVAARILKKG 282 >gi|126652673|ref|ZP_01724834.1| ribonuclease HIII [Bacillus sp. B14905] gi|126590522|gb|EAZ84640.1| ribonuclease HIII [Bacillus sp. B14905] Length = 308 Score = 69.7 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 25/169 (14%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79 V G DE G G GP+ VAA+ + + I G+ DSK +S ++ + ++ Sbjct: 93 MSVLGSDETGTGDYFGPITVAAVYVPASKIELINELGVKDSKLLSDDYMRKIAPDLRAAC 152 Query: 80 IISISSASHQYIDKHNI---HKATLDAIYH--AVEN-----LQVIPRSALID-------- 121 + S+ ++ + + + A+ H A++N P LID Sbjct: 153 VHSVLVLRNEKYNSLQAKGYSQGKMKAMMHNKALQNTLTKMTPEKPECILIDQFAERGVY 212 Query: 122 GRSIPEDLPCQAFAV---IKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + + +V K + + +++A ASI+A+ + M + Sbjct: 213 YNYLKNEREIVQESVYFSTKAEQLHVAVATASILARAAFLKEMDRLSEI 261 >gi|261332533|emb|CBH15528.1| ribonuclease H, putative [Trypanosoma brucei gambiense DAL972] Length = 326 Score = 69.7 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 82/224 (36%), Gaps = 51/224 (22%) Query: 25 PVAGIDEVGRGALAGPVVV--AAIILDPNNIPF---GINDSKKISHKKREELYEKITSSA 79 V GIDE GRG + GP+V A I L ++ G NDSK ++ +R+ + K+ A Sbjct: 40 LVMGIDEAGRGPVVGPMVYTGAMIALHEHDRLVDYCGANDSKVLNEDQRKSVVSKLHELA 99 Query: 80 II--SISSASHQYI-------DKHNIHKATLDAIYHAVENLQV----IPRSALIDGRSIP 126 + I N++ + + L + + +A +D P Sbjct: 100 TFRTFTVVVTPDEIAAAMTGVHGTNLNTLSHQTAISIISKLTLEGMGMLTAAYVDTVGPP 159 Query: 127 EDLPC---------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 E + K + +AAAS++AKV RD + G D Sbjct: 160 ESYQQKLSGRFPHLRVTVAKKAEIKFPIVAAASVVAKVERDSHIERL-------GIDVGS 212 Query: 178 GYPT-AKHQQVIKEKGPSCIHRL------------TFRPLRNLS 208 GYP+ K ++ +HR ++ P+ L+ Sbjct: 213 GYPSDPKVMMWVRSH----VHRFFVMPRECNFVRLSWAPVTQLA 252 >gi|328956934|ref|YP_004374320.1| ribonuclease HIII [Carnobacterium sp. 17-4] gi|328673258|gb|AEB29304.1| ribonuclease HIII [Carnobacterium sp. 17-4] Length = 332 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 43/182 (23%), Positives = 73/182 (40%), Gaps = 27/182 (14%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-- 77 W V G DEVG G+ GP+ V A D + + G+ DSK + + + + + + Sbjct: 115 WSVIGSDEVGTGSYFGPLTVVAAYADHSQLALLKELGVRDSKDMKDPEIIRVAKDLITFL 174 Query: 78 -SAIISISSASHQYIDKHNI---HKATLD--AIYHAVENLQVI-PRSALIDG-------- 122 +++++ + I KA L A+ H +E + P LID Sbjct: 175 PHSLLNVMPEKYNTIQPTMTQGKMKAILHNQALGHVLEKISPQKPDGILIDQFELPATYF 234 Query: 123 ---RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P+ + + KG+ LS+AAASIIA+ ++ + GF G Sbjct: 235 KHINDQPKQIKESVYFQTKGEGHHLSVAAASIIARYA---FLKGLDELSAKAGFKIPSGA 291 Query: 180 PT 181 + Sbjct: 292 GS 293 >gi|71747398|ref|XP_822754.1| ribonuclease H [Trypanosoma brucei TREU927] gi|70832422|gb|EAN77926.1| ribonuclease H, putative [Trypanosoma brucei] Length = 326 Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 82/224 (36%), Gaps = 51/224 (22%) Query: 25 PVAGIDEVGRGALAGPVVV--AAIILDPNNIPF---GINDSKKISHKKREELYEKITSSA 79 V GIDE GRG + GP+V A I L ++ G NDSK ++ +R+ + K+ A Sbjct: 40 LVMGIDEAGRGPVVGPMVYTGAMIALHEHDRLVDYCGANDSKVLNEDQRKSVVSKLHELA 99 Query: 80 II--SISSASHQYI-------DKHNIHKATLDAIYHAVENLQV----IPRSALIDGRSIP 126 + I N++ + + L + + +A +D P Sbjct: 100 TFRTFTVVVTPDEIAAAMTGAHGTNLNTLSHQTAISIISKLTLEGMGMLTAAYVDTVGPP 159 Query: 127 EDLPC---------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 E + K + +AAAS++AKV RD + G D Sbjct: 160 ESYQQKLSGRFPHLRVTVAKKAEIKFPIVAAASVVAKVERDSHIERL-------GIDVGS 212 Query: 178 GYPT-AKHQQVIKEKGPSCIHRL------------TFRPLRNLS 208 GYP+ K ++ +HR ++ P+ L+ Sbjct: 213 GYPSDPKVMMWVRSH----VHRFFVMPRECNFVRLSWAPVTQLA 252 >gi|313633654|gb|EFS00411.1| ribonuclease hiii [Listeria seeligeri FSL N1-067] Length = 296 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 25/154 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78 V G DEVG G GP+ V A ++ +P G+ DSK + + + EKI Sbjct: 81 VLGSDEVGTGDFFGPITVCAAYVEETIMPLLKELGVKDSKAMKDPEICRIAEKIMPVVPH 140 Query: 79 AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123 +++ + + + +++ + A A+EN+ P + LID Sbjct: 141 SVLLCPNPKYNEMQSRGMNQGQMKALLHNRALENVLKKIAPTKPEAILIDQFAEKNTYYR 200 Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 P + F K + + LS+AAASIIA+ Sbjct: 201 YLAKEPTIIRENVFFATKAEGLHLSVAAASIIAR 234 >gi|331266981|ref|YP_004326611.1| ribonuclease HIII [Streptococcus oralis Uo5] gi|326683653|emb|CBZ01271.1| ribonuclease HIII [Streptococcus oralis Uo5] Length = 293 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 29/197 (14%) Query: 27 AGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKITSS 78 G DEVG G+ G + VVA+ + + G+ DSK ++ +K +L EKI Sbjct: 81 IGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQLAPILKEKIQHQ 140 Query: 79 AIISISSASHQYIDKH----NIHKATLDAIYHAVENLQVIPRSALIDGRSIPED------ 128 A++ S ++ I + ++ A + + V P +ID + P++ Sbjct: 141 ALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQKGVQPEKIVIDAFTSPKNYDKYLA 200 Query: 129 -----LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 P + K + L++A +SIIA RD + + G+ G TA Sbjct: 201 QEANRFPNKITLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAGTAS 257 Query: 184 HQQV---IKEKGPSCIH 197 + ++ G +H Sbjct: 258 DKVASKILQAYGMKGLH 274 >gi|163791555|ref|ZP_02185959.1| ribonuclease HIII [Carnobacterium sp. AT7] gi|159873191|gb|EDP67291.1| ribonuclease HIII [Carnobacterium sp. AT7] Length = 312 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 28/174 (16%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-- 77 W V G DEVG G+ GP+ V A +D + + G+ DSK++ + + + + + Sbjct: 95 WSVIGSDEVGTGSYFGPLTVVAAYVDQSQLALLKELGVRDSKEMKDSEIIRVAKDLITFL 154 Query: 78 -SAIISISSASHQYIDKHNI---HKATLD--AIYHAVENLQV-IPRSALIDGRSIPEDL- 129 +++++ + I KA L A+ H +E ++ P LID +P Sbjct: 155 PHSLLNVMPEKYNAIQPTMTQGKMKAILHNQALGHVLEKIKPKKPDGILIDQFELPATYF 214 Query: 130 ------PCQAFAVI----KGDSISLSIAAASIIAKVTR----DRLMRIAHKKYP 169 P Q I KG+ L++AAASIIA+ D L A K P Sbjct: 215 KHISDQPKQIKETIYFQTKGEGHHLAVAAASIIARYAFLKGLDELTAQAGMKIP 268 >gi|289434477|ref|YP_003464349.1| ribonuclease HIII, putative [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170721|emb|CBH27261.1| ribonuclease HIII, putative [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 296 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 25/154 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78 V G DEVG G GP+ V A ++ +P G+ DSK + + + EKI Sbjct: 81 VLGSDEVGTGDFFGPITVCAAYVEETIMPLLKELGVKDSKAMKDPEICRIAEKIMPVVPH 140 Query: 79 AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123 +++ + + + +++ + A A+EN+ P + LID Sbjct: 141 SVLLCPNPKYNEMQSRGMNQGQMKALLHNRALENVLKKIAPTKPEAILIDQFAEKNTYYR 200 Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 P + F K + + LS+AAASIIA+ Sbjct: 201 YLAKEPTIIRENVFFATKAEGLHLSVAAASIIAR 234 >gi|194246531|ref|YP_002004170.1| Ribonuclease HIII [Candidatus Phytoplasma mali] gi|254808013|sp|B3R0F3|RNH3_PHYMT RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|193806888|emb|CAP18317.1| Ribonuclease HIII [Candidatus Phytoplasma mali] Length = 288 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 23/178 (12%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKK 67 ++ ++ K+ + G DEVG G + G +VV + + NIPF I DSKK++ +K Sbjct: 65 LNIKEILNIKDYSAI-GSDEVGTGDVFGSIVVCSSYVSAENIPFLENLNIKDSKKLTDEK 123 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR---- 123 +L KI + S+ S + + L+ I + N ++ I Sbjct: 124 IIQLVPKIINKITYSLISINPYKYNILTNKGFNLNKIKAILHNDMILKNLIKIKKNVNVI 183 Query: 124 --------------SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + + + F K + + +S+AAASIIA+ + + KK Sbjct: 184 LDKFTSSKNYFNYLKNEKKVYKKIFFCNKAEKVHISVAAASIIARYAFLKNIFALSKK 241 >gi|322374879|ref|ZP_08049393.1| ribonuclease HIII [Streptococcus sp. C300] gi|321280379|gb|EFX57418.1| ribonuclease HIII [Streptococcus sp. C300] Length = 293 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 81/213 (38%), Gaps = 30/213 (14%) Query: 12 FELEAMVREKNM-WPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHK 66 F E +P+ G DEVG G+ G + VVA+ + G+ DSK ++ + Sbjct: 65 FGYEVQQENSGQDFPMIGTDEVGNGSYFGGLAVVASFVTPDQYDFLRKLGVGDSKTLTDQ 124 Query: 67 KREELYEKITS----SAIISISSASHQYIDKH----NIHKATLDAIYHAVENLQVIPRSA 118 K ++ + A++ S ++ I + ++ A + + V P Sbjct: 125 KIRQIAPILKEKIPHQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQKGVQPEKI 184 Query: 119 LIDGRSIPED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 +ID + P++ P + K + L++A +SIIA RD + Sbjct: 185 VIDAFTSPKNYDKYLAQEANRFPNKISLEEKAEGKYLAVAVSSIIA---RDLFLENLENL 241 Query: 168 YPDYGFDSHVGYPTAKHQQV---IKEKGPSCIH 197 + G+ G TA + ++ G +H Sbjct: 242 GRELGYQLPSGAGTASDKVASKILQAYGMKGLH 274 >gi|47213806|emb|CAF92579.1| unnamed protein product [Tetraodon nigroviridis] Length = 115 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 7/76 (9%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKI-TSSAIIS 82 GIDE GRG + GP+V + + DSK ++ +RE L+EK+ + + I Sbjct: 32 GIDEAGRGPVLGPMVYGICFCPISRKDELKDLKVADSKTLTEAEREALFEKLDEAKSYIG 91 Query: 83 IS--SASHQYIDKHNI 96 + S I + Sbjct: 92 WALQVLSPNTISTSML 107 >gi|225155691|ref|ZP_03724179.1| ribonuclease HIII [Opitutaceae bacterium TAV2] gi|224803485|gb|EEG21720.1| ribonuclease HIII [Opitutaceae bacterium TAV2] Length = 356 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 75/206 (36%), Gaps = 44/206 (21%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS----- 77 AG+DE G+G GPVV A +I + + I G+ DSKKI+ + EL I Sbjct: 108 AGLDESGKGDFFGPVVAATVIAEKSAIEAWRKAGVQDSKKITENRILELDRLIRETPGVV 167 Query: 78 -SAIISISSASHQYIDKHNIHKATLDAIYHA---VENLQVIPRS-ALIDGRS-------- 124 + ++ + + L A HA ++ L P L+D S Sbjct: 168 ARTLYCGMPKYNELMARPRASLNKLLAWQHAKALLQALGEKPVHWGLLDQFSEQPLVQRE 227 Query: 125 -------------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 K + +AAASI+A+ R+MR K++ Sbjct: 228 LKRLASPPPPPAPALLPPGFDLRMRTKAEE-DPVVAAASIVARAEYVRIMRELSKRF--- 283 Query: 172 GFDSHVGYP----TAKHQQVIKEKGP 193 G G T H ++I++ G Sbjct: 284 GAPLQKGASALVKTQAH-EIIRKFGV 308 >gi|299535515|ref|ZP_07048836.1| ribonuclease HIII [Lysinibacillus fusiformis ZC1] gi|298728715|gb|EFI69269.1| ribonuclease HIII [Lysinibacillus fusiformis ZC1] Length = 307 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 65/169 (38%), Gaps = 25/169 (14%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79 V G DE G G GP+ VAA+ + + I G+ DSK ++ ++ + ++ Sbjct: 92 MSVLGSDETGTGDYFGPITVAAVYVPTSKIELMNELGVKDSKMLTDDYMRKIAPDLRAAC 151 Query: 80 IISISSASHQYIDKHNI---HKATLDAIYH--AVEN-----LQVIPRSALID-------- 121 + S+ ++ + + + A+ H A++N P LID Sbjct: 152 VHSVLVLRNEKYNNLQGKGYSQGKMKAMMHNKALQNTLSKMAPEKPEFILIDQFAERGVY 211 Query: 122 GRSIPEDLPCQAFAV---IKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + + V K + + +++A ASI+A+ + M Sbjct: 212 YNYLKNERELVQENVYFSTKAEQLHVAVATASILARAAFLKEMDRLSDI 260 >gi|46446313|ref|YP_007678.1| ribonuclease HIII [Candidatus Protochlamydia amoebophila UWE25] gi|73917847|sp|Q6MDE6|RNH3_PARUW RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|46399954|emb|CAF23403.1| putative ribonuclease HII [Candidatus Protochlamydia amoebophila UWE25] Length = 301 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 77/212 (36%), Gaps = 40/212 (18%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS 82 GIDE G+G GP+ +A + + N G+ DSK +S K +L +I + + Sbjct: 93 IGIDESGKGDFFGPLCIAGVYIQANQFSKLQALGVKDSKTLSDKTIRQLASQIKNLCLYH 152 Query: 83 ISSASHQYI-----DKHNIHKATLDAIYHAVEN--LQVIPRSALIDG------------- 122 I + D N++ +E LQ ++ ++D Sbjct: 153 IVKINPAKYNEIYQDFKNLNHLLAWGHATTIEQLILQSGCQTVIVDQFADEKVVLLALKR 212 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT- 181 + + +L + A L++AAASI+A+ + K+ T Sbjct: 213 KKLDVNLTQRHRA-----EDDLAVAAASILARQAFIDGLEQLSKEI-QIPLPKGSSSATQ 266 Query: 182 AKHQQVIKEKG------PSCIHRLTFRPLRNL 207 ++V+++ G H F+ L + Sbjct: 267 KAGKEVLRKWGEERLRSICKQH---FKTLDAI 295 >gi|146103342|ref|XP_001469539.1| ribonuclease H [Leishmania infantum] gi|134073909|emb|CAM72648.1| putative ribonuclease H [Leishmania infantum JPCM5] Length = 316 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 27/170 (15%) Query: 24 WPVAGIDEVGRGALAGPVVV-AAII-LDPNNIPF---GINDSKKISHKKREELYEKIT-- 76 + V GI E GRG++ GP+ A+I L ++ + DSK + ++R +++ Sbjct: 44 YLVLGIGEAGRGSVIGPIFYTGAVISLGEHDDLVRLCHVADSKTLDERRRLASLQQLRLL 103 Query: 77 SSAIISISSASHQYIDK-------HNIHKATLDAIYHAVENL------QVIPRSALIDG- 122 + S + I K N++ + + + ++ G Sbjct: 104 KTFRSFTVCVSPEEISKTITGRSGRNLNTLSHETAIQIISKATLASAGKLCAAYVGTAGP 163 Query: 123 -----RSIPEDLPCQAFAVIK-GDSISLSIAAASIIAKVTRDRLMRIAHK 166 + P V K DS ++AASI+AK TRD + + Sbjct: 164 PATYQERLAGRFPHLRVTVAKKADSQFPIVSAASIVAKTTRDTAIEALGE 213 >gi|70926382|ref|XP_735739.1| ribonuclease H1 large subunit [Plasmodium chabaudi chabaudi] gi|56509666|emb|CAH81806.1| ribonuclease H1 large subunit, putative [Plasmodium chabaudi chabaudi] Length = 133 Score = 68.6 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 8/120 (6%) Query: 18 VREKNMWPV-AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELY 72 + E V GIDE GRG + GP+V + + I+DSKKIS RE+++ Sbjct: 9 LYEFGNEEVRLGIDEAGRGPVLGPMVYSGFYCKKEDEKLLKEMKIDDSKKISENDREKMF 68 Query: 73 EKITSSAI---ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 K+ +S + + Q I + K + + + I + L G ++ E Sbjct: 69 YKLNNSTLPFGWRVHVLMPQDISAKMLKKQKYNLNEISHDTAISIIQHVLSRGCNLTEVF 128 >gi|299822574|ref|ZP_07054460.1| ribonuclease H [Listeria grayi DSM 20601] gi|299816103|gb|EFI83341.1| ribonuclease H [Listeria grayi DSM 20601] Length = 253 Score = 68.6 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 76/195 (38%), Gaps = 31/195 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT---SS 78 V G DEVG G GP+ V A + +P G+ DSK + + + EKI Sbjct: 40 VVGSDEVGTGDYFGPITVCAAYVSSEMMPQLTALGVRDSKDMRDPEILTVAEKIIPFVPH 99 Query: 79 AIISISSASHQYIDKHNIHKATLDA--IYHAVENL-----QVIPRSALIDGR-------- 123 +++ + + + + +++ + A A+EN+ + P + LID Sbjct: 100 SVLICPNGKYNALQQSGMNQGKMKAILHNRAIENVLKKLAPLHPDAILIDQFAEKGVYYR 159 Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + P + + K + L++AAASIIA R R ++ + G G Sbjct: 160 YLANEPSIMRENVYFATKAEGHHLAVAAASIIA---RYRFVKAFEEIQQQVGLPLTKGAG 216 Query: 181 TAKHQQV---IKEKG 192 + I+ G Sbjct: 217 AKVDAEAAEIIRRFG 231 >gi|323490479|ref|ZP_08095686.1| ribonuclease HIII [Planococcus donghaensis MPA1U2] gi|323395883|gb|EGA88722.1| ribonuclease HIII [Planococcus donghaensis MPA1U2] Length = 309 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 25/169 (14%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79 V G DE G G GP+ VAA + + + G+ DSK+++ ++ + + Sbjct: 89 QSVLGSDETGTGDFFGPITVAACFVPSDKVELAYELGVKDSKQLTDDWMRKVAPDLKRAF 148 Query: 80 IISISSASHQYIDKHNIH-----KATLDAIYHAVENL-----QVIPRSALID-------- 121 S+ + + +K K A++++ P + LID Sbjct: 149 AHSVLTLKNDKYNKVQAQGWSQGKIKALLHNQALKHVLAKIAPEKPDAILIDQFAERSIY 208 Query: 122 GRSIPEDLPCQAFAV---IKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + I E+ V K + + +S+A ASIIA+V M + Sbjct: 209 YKHIKEETEIVRENVLFSTKAEGLHVSVACASIIARVAFLDEMDRMSTE 257 >gi|295099552|emb|CBK88641.1| Ribonuclease HIII [Eubacterium cylindroides T2-87] Length = 170 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 8/109 (7%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHK 66 E+ KNM+P AG DEVG G GPVVV+A+I+ N I DSK+I+ + Sbjct: 54 WLSQESSSESKNMFPQAGSDEVGTGDYFGPVVVSAVIVSKENEDVLRNLKIQDSKQINDE 113 Query: 67 KREELYEKITSSAIISISSASHQYID----KHNIHKATLDAIYHAVENL 111 K L ++I S +I S + +HN+ A NL Sbjct: 114 KIRVLAKEIKSLCPHTILIVSSSKYNSVHKQHNMVDIKCKLHNQAYLNL 162 >gi|197294741|ref|YP_001799282.1| Ribonuclease HII family protein [Candidatus Phytoplasma australiense] gi|171854068|emb|CAM12041.1| Ribonuclease HII family protein [Candidatus Phytoplasma australiense] Length = 301 Score = 68.2 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 70/172 (40%), Gaps = 22/172 (12%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHKKRE 69 E + G DEVG G + GP++V ++ + P NI F +++SK++ K Sbjct: 77 EKKNTKSYYLESIGSDEVGTGDVFGPIIVCSVYIPPQNITFFQKKIFLSESKQMLDKNII 136 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKAT--LDAIYHAVENLQVIPRS-----ALIDG 122 + I I +I + +K ++ + A+ H + LQ + + ++D Sbjct: 137 QTVPLIMDKVIKTIVTLKPSKYNKLIVNNNLNKIKALMHNLSILQTVEKINKAVPVILDQ 196 Query: 123 RSIPEDLP----------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA 164 +P+ + K DS LS+A AS+IA+ + M Sbjct: 197 FCLPKLYFNYLKDETSVYQKINFQTKADSNYLSVAVASLIARYYFLKKMNQL 248 >gi|306828934|ref|ZP_07462126.1| ribonuclease HIII [Streptococcus mitis ATCC 6249] gi|304429112|gb|EFM32200.1| ribonuclease HIII [Streptococcus mitis ATCC 6249] Length = 293 Score = 68.2 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 80/200 (40%), Gaps = 29/200 (14%) Query: 24 WPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKITS-- 77 +P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ + Sbjct: 78 FPMIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 78 --SAIISISSASHQYIDKH----NIHKATLDAIYHAVENLQVIPRSALIDGRSIPED--- 128 A++ S ++ I + ++ A + + V P +ID + P++ Sbjct: 138 PHQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQNGVQPEKIVIDAFTSPKNYDK 197 Query: 129 --------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 P + K + L++A +SIIA RD + + G+ G Sbjct: 198 YLAQEANRFPNKVSLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAG 254 Query: 181 TAKHQQV---IKEKGPSCIH 197 TA + ++ G +H Sbjct: 255 TASDKVASKILQAYGMKGLH 274 >gi|269115105|ref|YP_003302868.1| ribonuclease HII [Mycoplasma hominis] gi|268322730|emb|CAX37465.1| Ribonuclease HII [Mycoplasma hominis ATCC 23114] Length = 232 Score = 67.8 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 71/190 (37%), Gaps = 34/190 (17%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI 75 KN+ + G+DE G G PV+ A + +NI G+ DSKK+S K+ E++ +I Sbjct: 2 NKNLDELIGVDETGVGDYFSPVISVACYIPKDNIEKLKQIGVKDSKKLSDKRIIEIFNQI 61 Query: 76 TSSAII--------SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP- 126 + + I+ + I + + ID + Sbjct: 62 ENLVYYQKTCLSQSGYNKLIDAGINNNEIKTLIHSNSINILTKKLNQNIDVFIDQYTTSL 121 Query: 127 ---------------EDLPCQAFAVI---KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 D +I KG+ SL++AAASII +R L+ ++ Sbjct: 122 EVLQKHFKKLQAISWLDFKKPQNEIIIETKGEEKSLAVAAASII---SRKFLIDWMQQQN 178 Query: 169 PDYGFDSHVG 178 Y F+ +G Sbjct: 179 KKYNFEFKLG 188 >gi|157364353|ref|YP_001471120.1| ribonuclease HII/HIII [Thermotoga lettingae TMO] gi|157314957|gb|ABV34056.1| ribonuclease HII/HIII [Thermotoga lettingae TMO] Length = 305 Score = 67.8 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 85/206 (41%), Gaps = 23/206 (11%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKIT 76 KN+ P G DEVG+G + GPVVV A+ + I DSK I+ +K E+ +KI Sbjct: 97 KNILPAIGSDEVGKGDVFGPVVVTAVYIGCKEYVALKDVDIKDSKSINDRKILEISKKIK 156 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHA-----VENLQVIPRSALID-GRSIPEDLP 130 + +I + +++ I+ L H V + + D G Sbjct: 157 NICPHAIVVFEPERLNEKKINMNRLLEQMHIDAISRVLEKRSSLIAVYDDFGAKKDRMRS 216 Query: 131 CQAFAVI--KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD---YGFDSHVGYPTAKH- 184 + +I K +L++AAASI+++ + K Y G S+ T + Sbjct: 217 VEQLTLIGFKNGERNLAVAAASIVSRAEFLNWIETRSKFYEMEIPLG-ASNK---TIEFI 272 Query: 185 QQVIKEKGPSC---IHRLTFRPLRNL 207 +Q IK+ G I +L F +R Sbjct: 273 RQFIKKYGLEELKKIAKLCFSNVRKF 298 >gi|229823968|ref|ZP_04450037.1| hypothetical protein GCWU000282_01272 [Catonella morbi ATCC 51271] gi|229786322|gb|EEP22436.1| hypothetical protein GCWU000282_01272 [Catonella morbi ATCC 51271] Length = 319 Score = 67.8 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 31/174 (17%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS-- 77 W + G DEVG G+ G + V A+ LD + G+ DSK ++ + +L K+ Sbjct: 98 WTIIGSDEVGNGSYFGALTVCAVYLDAGDRAKIEGLGVKDSKLLTDAQILDLAPKLRQVL 157 Query: 78 -SAIISISSASHQYIDKHNIHKAT-----------LDAIYHAVENLQVIPRSALIDGRSI 125 + S A + +K A L A A + L + LID + Sbjct: 158 THELTICSPAKYNEANKTRNANAIKVSLHNFTIQKLLAKLSARQKLALQ--GILIDEFTS 215 Query: 126 PED----LPCQAFAVI-------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 P++ L +A + KG+S L++A ASIIA+ + Y Sbjct: 216 PQNYFNYLKKEAHPLTKGLYFAEKGESAHLAVACASIIARAWFLESLTTFGAPY 269 >gi|332364764|gb|EGJ42533.1| ribonuclease HIII [Streptococcus sanguinis SK1059] Length = 296 Score = 67.8 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 82/217 (37%), Gaps = 34/217 (15%) Query: 2 FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGI 57 F PE+ + +N + G DEVG G+ G + VVA+ + + G+ Sbjct: 64 FFGHQPEKSS----SSTASQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGV 118 Query: 58 NDSKKISHKKREELYEKITS----SAIISISSASHQYI----DKHNIHKATLDAIYHAVE 109 DSK ++ K +L + A++ ++ I + ++ A + + + Sbjct: 119 GDSKTLNDSKIHQLAPVLKEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLL 178 Query: 110 NLQVIPRSALIDGRSIPED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRD 158 + P +ID + ++ P + K + L++A +SIIA RD Sbjct: 179 QKGINPEKIVIDAFTSKQNYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIA---RD 235 Query: 159 RLMRIAHKKYPDYGFDSHVGYPTA-KHQ--QVIKEKG 192 + + G+ G + H Q+++ G Sbjct: 236 LFLENLENLSQELGYTLPSGAGSKSDHIASQILRAYG 272 >gi|295399299|ref|ZP_06809281.1| ribonuclease HIII [Geobacillus thermoglucosidasius C56-YS93] gi|294978765|gb|EFG54361.1| ribonuclease HIII [Geobacillus thermoglucosidasius C56-YS93] Length = 306 Score = 67.8 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 64/160 (40%), Gaps = 22/160 (13%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELYEKITSSAII 81 G DE G+G GP+V A+ +L + I G+ DSKKIS+K+ L +I Sbjct: 99 IGTDESGKGDFFGPLVTASFLLQSKDAENKLIAIGVTDSKKISNKQIIALASEIKKIGPY 158 Query: 82 SISSASHQYIDKHNIHKATLDA-----IYHAVENL-----------QVIPRSALIDGRSI 125 SI + ++ L+ A+EN+ +I + Sbjct: 159 SIVKIGPKKYNELYAKIGNLNNLLGWSHARAIENILTKYNCSVAVADQFGDEKIIKNSLL 218 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165 + + KG++ +++AAASI+A+ + + Sbjct: 219 KNGKEIKLYQFHKGEN-DIAVAAASILARSEFLQFINELE 257 >gi|289808317|ref|ZP_06538946.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 50 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 24/39 (61%), Positives = 28/39 (71%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 VAG+DEVGRG L G VV AA+ILDP G+ND +KI Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDYQKI 49 >gi|163782002|ref|ZP_02177001.1| hypothetical protein HG1285_17754 [Hydrogenivirga sp. 128-5-R1-1] gi|159882534|gb|EDP76039.1| hypothetical protein HG1285_17754 [Hydrogenivirga sp. 128-5-R1-1] Length = 272 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 23/189 (12%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVV-VAAIILDPNNIP---FGINDSKKISH---- 65 LE + E P+AG DEVG+G L GP+V A++ N DSK + Sbjct: 70 LERI--EAPEGPLAGCDEVGKGDLFGPLVLCCAVVNPENFKKVLSLSPKDSKSMKDDELL 127 Query: 66 KKREELYEKITSSAIISISSASHQ-YIDKHNIHKATLDAIYHAVENL--QVIPRSALIDG 122 K+ E+L + + I+ + ++ Y + NI++ DA V+++ P +ID Sbjct: 128 KRAEKLKKYVNRRCIVLMPERFNELYREYGNINRLMDDAYRKLVQSIVRDFRPVRVVID- 186 Query: 123 RSIPEDLPCQAFAVI----KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 P Q V+ KG+ + ++ AS++A R + + + +YG G Sbjct: 187 -RYSFRNPFQDMGVVDFLEKGE-RDVVVSVASMLA---RAKFLEKLRELEDNYGLKLPKG 241 Query: 179 YPTAKHQQV 187 + + Sbjct: 242 ASSEAKRLA 250 >gi|257456663|ref|ZP_05621856.1| ribonuclease HII [Treponema vincentii ATCC 35580] gi|257445930|gb|EEV20980.1| ribonuclease HII [Treponema vincentii ATCC 35580] Length = 42 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 21/37 (56%), Positives = 25/37 (67%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 GIDE GRGALAGPV AA+IL + ++DSKK Sbjct: 4 CGIDEAGRGALAGPVYAAAVILPASFDVSVLDDSKKT 40 >gi|322503423|emb|CBZ38508.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 316 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 27/170 (15%) Query: 24 WPVAGIDEVGRGALAGPVVV-AAII-LDPNNIPF---GINDSKKISHKKREELYEK--IT 76 + V GI E GRG++ GP+ A+I L ++ + DSK + ++R ++ + Sbjct: 44 YLVLGIGEAGRGSVIGPIFYTGAVISLGEHDDLVQLCHVADSKTLDERRRLASLQQLHLL 103 Query: 77 SSAIISISSASHQYIDKHNI-----------HKATLDAIYHAVENLQVIPRSALIDGRSI 125 + S + K H+ + I A +A + Sbjct: 104 KTFRSFTVCVSPEEFSKTITGRSGRNLNTLSHETAIQIISEATLASAGKLCAAYVGTAGP 163 Query: 126 PEDLP---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 P + K DS ++AASI+AK TRD + + Sbjct: 164 PATYQEGLAGRFPHLRVTVAKKADSQFPIVSAASIVAKTTRDTAIEALGE 213 >gi|306825816|ref|ZP_07459155.1| ribonuclease HIII [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432177|gb|EFM35154.1| ribonuclease HIII [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 293 Score = 67.0 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 81/200 (40%), Gaps = 29/200 (14%) Query: 24 WPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKI 75 +P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ EKI Sbjct: 78 FPMIGTDEVGNGSYFGALAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYIDKH----NIHKATLDAIYHAVENLQVIPRSALIDGRSIPED--- 128 A++ S ++ I + ++ A + + V P +ID + ++ Sbjct: 138 QHQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQKGVQPEKIVIDAFTSAKNYDK 197 Query: 129 --------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 P + K + L++A +SIIA RD + + G+ G Sbjct: 198 YLAQEANHFPNKITLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAG 254 Query: 181 TAKHQQV---IKEKGPSCIH 197 TA + ++ G +H Sbjct: 255 TASDKVASKILQAYGMKGLH 274 >gi|23099583|ref|NP_693049.1| ribonuclease HIII [Oceanobacillus iheyensis HTE831] gi|81746030|sp|Q8EPH7|RNH3_OCEIH RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|22777813|dbj|BAC14084.1| ribonuclease HIII (RNase HIII) [Oceanobacillus iheyensis HTE831] Length = 308 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 75/189 (39%), Gaps = 29/189 (15%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDS 60 S+ ++ + +A + N G DE G G GP+ VAA+ G+ DS Sbjct: 76 SLEQKHSYSPQAELFTDNH---IGSDEAGTGDYFGPITVAALFATKEQQLKLKQIGVRDS 132 Query: 61 KKISHKKREELYEKI----TSSAIISISSASHQYIDKHNIHKATLDA--IYHAVENLQVI 114 K ++ K +++ ++I +++ + + + + + + A +HA++ L Sbjct: 133 KHLNDTKIKQIAKEIAHLQIPYSLLLLPNGKYNKLQAKGWSQGKMKAMLHHHAIDKLLQK 192 Query: 115 PR-----SALIDGRSIPE-----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRD 158 +ID P L + K +S S+S+AAASI+A+ Sbjct: 193 IDVRSLKGIVIDQFCQPPVYKKYLQSEKKTLHPNTTFITKAESHSISVAAASILARARFV 252 Query: 159 RLMRIAHKK 167 M ++ Sbjct: 253 NAMDELSEE 261 >gi|217967101|ref|YP_002352607.1| ribonuclease HII/HIII [Dictyoglomus turgidum DSM 6724] gi|217336200|gb|ACK41993.1| ribonuclease HII/HIII [Dictyoglomus turgidum DSM 6724] Length = 424 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 28/174 (16%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK----------REEL 71 N V G DEVG+G + GP++ +++ + I ++ K KK + L Sbjct: 80 NKDYVLGFDEVGKGEVFGPIITCGVLIRKDVISQIPSELKTPDTKKSHGFEYWTRILKVL 139 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKAT----LDAIYHAVENLQVIPR-SALIDGRSIP 126 + I+ I + ID+ NI++ + I + +L +ID + Sbjct: 140 EDLISDGFYYIIDIIQPREIDRFNINQLLDLSYMKLIKQLITDLPYRKEVRIVIDDYGVG 199 Query: 127 EDLPCQAFAVIKGDSISLSI------------AAASIIAKVTRDRLMRIAHKKY 168 E L + +IKG++ +I AS+IAK R+ +++ ++Y Sbjct: 200 EGL-QRFLEIIKGENNFETIIVTESEDKFLEAKLASLIAKSYRESILKNLQERY 252 >gi|125717223|ref|YP_001034356.1| ribonuclease HIII [Streptococcus sanguinis SK36] gi|125497140|gb|ABN43806.1| Ribonuclease HIII, putative [Streptococcus sanguinis SK36] Length = 322 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 75/199 (37%), Gaps = 30/199 (15%) Query: 20 EKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKI 75 +N + G DEVG G+ G + VVA+ + + G+ DSK + K +L + Sbjct: 104 SQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTFNDNKIRQLAPVL 162 Query: 76 TS----SAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ ++ I + ++ A + + + P +ID + + Sbjct: 163 KEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIFLLLQKGINPEKIVIDAFTSQQ 222 Query: 128 D-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + P + K + L++A +SIIA RD + + G+ Sbjct: 223 NYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIA---RDLFLENLENLSQELGYALP 279 Query: 177 VGYPTA-KHQ--QVIKEKG 192 G + H Q+++ G Sbjct: 280 SGAGSKSDHVASQILQAYG 298 >gi|281358639|ref|ZP_06245117.1| ribonuclease HIII [Victivallis vadensis ATCC BAA-548] gi|281314869|gb|EFA98904.1| ribonuclease HIII [Victivallis vadensis ATCC BAA-548] Length = 315 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 81/212 (38%), Gaps = 36/212 (16%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKI-SHKKREELYEKITSSA--I 80 GIDE G+G GP+ +A + D P G DSK I S KK EL + I A Sbjct: 98 GIDESGKGDFFGPLCIAGVYADAETGPELRKLGCCDSKLIKSPKKILELAKGIREIARDQ 157 Query: 81 ISISSASHQYIDKH-----NIHKATLDAIYHAVENL------------QVIPRSALIDGR 123 ++ + + ++ N+++ +ENL +LI Sbjct: 158 YAVVNLPPETYNRLYDKIGNLNRLLAWGHARVIENLLEKVPECPRMLSDKFADESLIKRA 217 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + + K +S +++AAASI+A+ R M ++ + F G Sbjct: 218 LMTRGKQIRMEQRTKAES-DVAVAAASILAREQFLRGMEKLSAEFGET-FPKGAG---PL 272 Query: 184 HQQ----VIKEKGPSCIHRLT---FRPLRNLS 208 ++ ++++ GP R F+ L+ Sbjct: 273 VRETGARILEKHGPGAFARCAKLHFKTYSELT 304 >gi|29840058|ref|NP_829164.1| ribonuclease HIII [Chlamydophila caviae GPIC] gi|33301625|sp|Q823W2|RNH3_CHLCV RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|29834406|gb|AAP05042.1| ribonuclease HIII [Chlamydophila caviae GPIC] Length = 300 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 67/173 (38%), Gaps = 26/173 (15%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKKREELYEK 74 E+++ P G+DE G+G GP+ +A + N I DSK ++ + L + Sbjct: 82 EEDLRPRLGVDESGKGDFFGPLCIAGVYAKDEETLKNLYKTKIQDSKLLNDAQILSLAKT 141 Query: 75 ITSSAIISISSASHQYIDK-----HNIHKATLDAIYHAVENLQVIP-------------- 115 I +S + + ++ HN++ A ++ L P Sbjct: 142 IRASCSCDVMILYPEKYNELYGKFHNLNILLAWAHATIIDQLAPRPSGEVFAISDQFASS 201 Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 S L++ ++ ++ + + +AAASI+A+ M +++ Sbjct: 202 ESVLLNALR-KKNTDISVIQKVRAEQ-DIVVAAASILAREAFITAMTKLEQRF 252 >gi|15828771|ref|NP_326131.1| ribonuclease HII (RNase HII) [Mycoplasma pulmonis UAB CTIP] gi|14089714|emb|CAC13473.1| RIBONUCLEASE HII (RNASE HII) [Mycoplasma pulmonis] Length = 243 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 72/195 (36%), Gaps = 41/195 (21%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKR 68 EL+ + K V GIDE G G P+V A ++ N I G+ DSKK+S K Sbjct: 11 ELQQELANKK---VLGIDETGVGDYFTPLVAAVAVVSEENVQKLIDLGVKDSKKLSDSKI 67 Query: 69 EELYEKITSS--AIISISSASH----QYIDKHNIHKATLDAIYHAVENLQ-----VIPRS 117 ++L I + A ++ K+N ++ A++ + Sbjct: 68 QQLASIIKENELAKFKVAHIGPKGYNNMTKKNNANEIKTFVHLKALKEAKFTIKTNDFDC 127 Query: 118 ALIDG----RSIP----------------EDLPCQAFAVIKGDSISLSIAAASIIAKVTR 157 LID +I + + + +S +S+A ASI+A R Sbjct: 128 VLIDQYSTENAIKGYLEKWFDPSMKWAGFRKINKPIYLTYQAESKHISVAVASIMA---R 184 Query: 158 DRLMRIAHKKYPDYG 172 D L+ + YG Sbjct: 185 DFLINKMKEYNALYG 199 >gi|182683372|ref|YP_001835119.1| ribonuclease HIII [Streptococcus pneumoniae CGSP14] gi|303255384|ref|ZP_07341450.1| ribonuclease HIII [Streptococcus pneumoniae BS455] gi|303259481|ref|ZP_07345458.1| ribonuclease HIII [Streptococcus pneumoniae SP-BS293] gi|303262344|ref|ZP_07348287.1| ribonuclease HIII [Streptococcus pneumoniae SP14-BS292] gi|303264762|ref|ZP_07350679.1| ribonuclease HIII [Streptococcus pneumoniae BS397] gi|303266601|ref|ZP_07352486.1| ribonuclease HIII [Streptococcus pneumoniae BS457] gi|303268834|ref|ZP_07354621.1| ribonuclease HIII [Streptococcus pneumoniae BS458] gi|238691129|sp|B2ILU9|RNH3_STRPS RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|73916724|gb|AAZ93230.1| RNase HII [Streptococcus pneumoniae] gi|73916784|gb|AAZ93260.1| RNase HII [Streptococcus pneumoniae] gi|182628706|gb|ACB89654.1| ribonuclease HIII [Streptococcus pneumoniae CGSP14] gi|301801316|emb|CBW33999.1| ribonuclease HIII [Streptococcus pneumoniae INV200] gi|302597629|gb|EFL64709.1| ribonuclease HIII [Streptococcus pneumoniae BS455] gi|302636443|gb|EFL66935.1| ribonuclease HIII [Streptococcus pneumoniae SP14-BS292] gi|302639415|gb|EFL69873.1| ribonuclease HIII [Streptococcus pneumoniae SP-BS293] gi|302641615|gb|EFL71975.1| ribonuclease HIII [Streptococcus pneumoniae BS458] gi|302643845|gb|EFL74107.1| ribonuclease HIII [Streptococcus pneumoniae BS457] gi|302645629|gb|EFL75859.1| ribonuclease HIII [Streptococcus pneumoniae BS397] Length = 290 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLERELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|315612578|ref|ZP_07887491.1| ribonuclease HIII [Streptococcus sanguinis ATCC 49296] gi|315315559|gb|EFU63598.1| ribonuclease HIII [Streptococcus sanguinis ATCC 49296] Length = 291 Score = 65.5 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 81/200 (40%), Gaps = 29/200 (14%) Query: 24 WPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKI 75 +P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ EKI Sbjct: 78 FPMIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYIDKH----NIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL-- 129 A++ S ++ I + ++ A + + V P +ID + ++ Sbjct: 138 QHQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQKGVQPEKIVIDAFTSAKNYDK 197 Query: 130 ---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 P + K + L++A +SIIA RD + + G+ G Sbjct: 198 YLAMEANHVPNKITLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAG 254 Query: 181 TAKHQQV---IKEKGPSCIH 197 TA + ++ G +H Sbjct: 255 TASDKVASKILQAYGMKGLH 274 >gi|223984561|ref|ZP_03634691.1| hypothetical protein HOLDEFILI_01986 [Holdemania filiformis DSM 12042] gi|223963466|gb|EEF67848.1| hypothetical protein HOLDEFILI_01986 [Holdemania filiformis DSM 12042] Length = 300 Score = 65.5 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 72/191 (37%), Gaps = 28/191 (14%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS 82 AG DEVG G G V V A ++ ++ +NDSK+I+ + + + S Sbjct: 91 AGSDEVGTGDYFGSVCVCACAVEQQDLAWLQELKVNDSKQINDEVILQTAPLLMERLAYS 150 Query: 83 ISSASHQYIDKH----NIHKATLDAIYHAVENLQVI----PRSALIDGRSIPEDL--PCQ 132 + ++ N+++ A +L+ P++A++D + + CQ Sbjct: 151 LLILPPVKYNQIHSQCNMNQIKAILHNQAYVHLKRKRGSLPQAAIVDQFTPEVNYYRYCQ 210 Query: 133 AFAVI--------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + K +S ++A AS+IA R ++ + G + Sbjct: 211 GQKEVVRGLHFETKAESHYPAVACASMIA---RCAFLKAWDAMEKQWDMSFTKGAGSVVD 267 Query: 185 QQV---IKEKG 192 Q +K+ G Sbjct: 268 QDGAAFVKKHG 278 >gi|289547944|ref|YP_003472932.1| ribonuclease HIII [Thermocrinis albus DSM 14484] gi|289181561|gb|ADC88805.1| ribonuclease HIII [Thermocrinis albus DSM 14484] Length = 258 Score = 65.5 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 60/140 (42%), Gaps = 9/140 (6%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYEKITSSAI 80 PV G DE G+G + GP+VV ++ P N + D K ++ ++ + + + Sbjct: 75 PVVGCDESGKGDVFGPLVVCCAVVKPENYLKLVQVAPRDGKSLTPQQIAKKFSLMQDLVD 134 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAV--ENLQVIPRS--ALIDGRSIPEDLPCQAFAV 136 I + ++ ++ + + E L+ +P ++D + + V Sbjct: 135 IRCRIMPPEELNALYKDMPNMNRVLTYLYKELLKEVPCQYPIVVDAYASRNPFGPKVTFV 194 Query: 137 IKGDSISLSIAAASIIAKVT 156 KG+ ++++A ASI A+ Sbjct: 195 PKGE-KNIAVACASIAARYH 213 >gi|62184923|ref|YP_219708.1| ribonuclease HIII [Chlamydophila abortus S26/3] gi|73917845|sp|Q5L6I4|RNH3_CHLAB RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|62147990|emb|CAH63741.1| ribonuclease hIII [Chlamydophila abortus S26/3] Length = 300 Score = 65.5 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 22/171 (12%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKKREELYEK 74 EK++ P G+DE G+G GP+ +A + N I DSK ++ + L + Sbjct: 82 EKDLRPRLGVDESGKGDFFGPLCIAGVYARDAETLKNLYKTKIQDSKMLNDNQILALAKT 141 Query: 75 ITSSAIISISSASHQYIDKHNI---HKATLDAIYHA--VENLQVIPR---SALIDGRSIP 126 I + + + + ++ + L A HA ++ L P A+ D + Sbjct: 142 IRACSTYDVMILYPEKYNELYAKFHNLNLLLAWAHATIIDQLAPRPSGEVFAISDQFASS 201 Query: 127 EDLPCQAFAVIKGD---------SISLSIAAASIIAKVTRDRLMRIAHKKY 168 E + QA D + +AAASI+A+ + +++ Sbjct: 202 ESVLLQALRKKSTDISVIQKVRAEQDIVVAAASILAREAFIHTITKLEQRF 252 >gi|94991140|ref|YP_599240.1| ribonuclease HIII [Streptococcus pyogenes MGAS10270] gi|166226675|sp|Q1JF63|RNH3_STRPD RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|94544648|gb|ABF34696.1| Ribonuclease HIII [Streptococcus pyogenes MGAS10270] Length = 300 Score = 65.5 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 31/200 (15%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSKK+S K +++ + Sbjct: 84 PIIGSDEVGNGSYFGGIAVVASFVDPKDHPFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143 Query: 81 ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI----- 125 S + ++ +I A + + + P+ +ID + Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203 Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P K +S L++A +SIIA R+ + + D G+ G Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260 Query: 180 PTAKHQ---QVIKEKGPSCI 196 +A + Q++ G S + Sbjct: 261 GSASDKVASQLLAAYGMSSL 280 >gi|71904214|ref|YP_281017.1| ribonuclease HIII [Streptococcus pyogenes MGAS6180] gi|123639303|sp|Q48RJ8|RNH3_STRPM RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|71803309|gb|AAX72662.1| ribonuclease HIII [Streptococcus pyogenes MGAS6180] Length = 300 Score = 65.5 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 31/200 (15%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSKK+S K +++ + Sbjct: 84 PIIGSDEVGNGSYFGGIAVVASFVDPKDHPFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143 Query: 81 ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI----- 125 S + ++ +I A + + + P+ +ID + Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNTISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203 Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P K +S L++A +SIIA R+ + + D G+ G Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260 Query: 180 PTAKHQ---QVIKEKGPSCI 196 +A + Q++ G S + Sbjct: 261 GSASDKVASQLLAAYGMSSL 280 >gi|270293333|ref|ZP_06199542.1| ribonuclease HIII [Streptococcus sp. M143] gi|270278182|gb|EFA24030.1| ribonuclease HIII [Streptococcus sp. M143] Length = 293 Score = 65.5 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 78/195 (40%), Gaps = 29/195 (14%) Query: 24 WPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKITS-- 77 +P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ + Sbjct: 78 FPMIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKV 137 Query: 78 --SAIISISSASHQYIDKH----NIHKATLDAIYHAVENLQVIPRSALIDGRSIPED--- 128 A++ S ++ I + ++ A + + V P +ID + P++ Sbjct: 138 QHQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQKGVQPERIVIDAFTSPKNYDK 197 Query: 129 --------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 P + K + L++A +SIIA RD + + G+ G Sbjct: 198 YLTQEANRFPNKISLEEKAEGKYLAVAVSSIIA---RDLFLESLENLGRELGYQLPSGAG 254 Query: 181 TAKHQQV---IKEKG 192 TA + ++ G Sbjct: 255 TASDKVASKILQAYG 269 >gi|73916816|gb|AAZ93276.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 78/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAG--PVVVAAIILDPNNIP--FGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G VV A + D ++ G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTSDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A+ L V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVTLHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + LS+A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|320528430|ref|ZP_08029592.1| ribonuclease HIII [Solobacterium moorei F0204] gi|320131344|gb|EFW23912.1| ribonuclease HIII [Solobacterium moorei F0204] Length = 289 Score = 65.5 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 21/168 (12%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKR----EELYE 73 N +P AG DEVG G GPV V A + ++ + G+ DSK++S L E Sbjct: 78 NHYPQAGSDEVGTGDYFGPVCVCASYVTKDDVDFLVKLGVRDSKQMSDADMLKIGPLLME 137 Query: 74 KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI---PRSALIDGR------- 123 +I S +I +Q + +N++ A NL P +ID Sbjct: 138 RIPHSLLIVPPQKYNQVHEANNLNAIKAKLHNQAYINLAKKIELPSFKVIDQFTPETSYY 197 Query: 124 SIPEDLPCQAFAVI---KGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 ++ P + K + LS+A SI+++ + + +KY Sbjct: 198 RYLKNEPQLIRGIHFETKAEDKYLSVAVGSIVSRYGFLKTWQEMEQKY 245 >gi|148983801|ref|ZP_01817120.1| ribonuclease HIII [Streptococcus pneumoniae SP3-BS71] gi|149003498|ref|ZP_01828372.1| ribonuclease HIII [Streptococcus pneumoniae SP14-BS69] gi|149008008|ref|ZP_01831565.1| ribonuclease HIII [Streptococcus pneumoniae SP18-BS74] gi|237650379|ref|ZP_04524631.1| ribonuclease HIII [Streptococcus pneumoniae CCRI 1974] gi|237822067|ref|ZP_04597912.1| ribonuclease HIII [Streptococcus pneumoniae CCRI 1974M2] gi|147758434|gb|EDK65433.1| ribonuclease HIII [Streptococcus pneumoniae SP14-BS69] gi|147760520|gb|EDK67496.1| ribonuclease HIII [Streptococcus pneumoniae SP18-BS74] gi|147923948|gb|EDK75060.1| ribonuclease HIII [Streptococcus pneumoniae SP3-BS71] gi|301799504|emb|CBW32051.1| ribonuclease HIII [Streptococcus pneumoniae OXC141] gi|332076846|gb|EGI87308.1| ribonuclease HIII [Streptococcus pneumoniae GA17545] gi|332077687|gb|EGI88148.1| ribonuclease HIII [Streptococcus pneumoniae GA41301] Length = 293 Score = 65.1 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + LS+A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|73916704|gb|AAZ93220.1| RNase HII [Streptococcus pneumoniae] gi|73916740|gb|AAZ93238.1| RNase HII [Streptococcus pneumoniae] gi|73916750|gb|AAZ93243.1| RNase HII [Streptococcus pneumoniae] gi|73916782|gb|AAZ93259.1| RNase HII [Streptococcus pneumoniae] gi|73916786|gb|AAZ93261.1| RNase HII [Streptococcus pneumoniae] gi|73916808|gb|AAZ93272.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 65.1 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + LS+A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|322387275|ref|ZP_08060885.1| ribonuclease HIII [Streptococcus infantis ATCC 700779] gi|321141804|gb|EFX37299.1| ribonuclease HIII [Streptococcus infantis ATCC 700779] Length = 293 Score = 65.1 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 86/207 (41%), Gaps = 30/207 (14%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNIPF---GINDSKKISHKK 67 +++E +V +N P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K Sbjct: 67 YQVEQVVSGQNF-PLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKVGVGDSKTLTDQK 125 Query: 68 REELY----EKITSSAIISISSASHQYIDKH----NIHKATLDAIYHAVENLQVIPRSAL 119 +L EKI A++ S ++ I + ++ A + + + +V P + Sbjct: 126 IRQLASLLKEKIQHQALLLSPSKYNEVIGERYNAVSVKVALHNQAIYLLLQKEVEPEKIV 185 Query: 120 IDGRSIPED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--K 166 ID + ++ K + L++A +SIIA RD + Sbjct: 186 IDAFTSSQNYQKYLKNEANHFSNPVTLEEKAEGKYLAVAVSSIIA---RDLFLENLENLG 242 Query: 167 KYPDYGFDSHVGYPT-AKHQQVIKEKG 192 + Y S G + Q+++ G Sbjct: 243 RELGYQLPSGAGAASDKVASQILQAYG 269 >gi|168482640|ref|ZP_02707592.1| ribonuclease hiii [Streptococcus pneumoniae CDC1873-00] gi|172043660|gb|EDT51706.1| ribonuclease hiii [Streptococcus pneumoniae CDC1873-00] gi|332203574|gb|EGJ17641.1| ribonuclease HIII [Streptococcus pneumoniae GA47368] Length = 293 Score = 65.1 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREE----LYEKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K + L EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + LS+A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDFFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|73916788|gb|AAZ93262.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 65.1 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREE----LYEKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K + L EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + LS+A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDFFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|301793646|emb|CBW36031.1| ribonuclease HIII [Streptococcus pneumoniae INV104] Length = 293 Score = 65.1 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAG--PVVVAAIILDPNNIP--FGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G VV A + D ++ G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTSDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + LS+A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|148993944|ref|ZP_01823314.1| ribonuclease HIII [Streptococcus pneumoniae SP9-BS68] gi|168488094|ref|ZP_02712293.1| ribonuclease hiii [Streptococcus pneumoniae SP195] gi|147927533|gb|EDK78560.1| ribonuclease HIII [Streptococcus pneumoniae SP9-BS68] gi|183572945|gb|EDT93473.1| ribonuclease hiii [Streptococcus pneumoniae SP195] gi|332075249|gb|EGI85719.1| ribonuclease HIII [Streptococcus pneumoniae GA17570] Length = 293 Score = 65.1 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAG--PVVVAAIILDPNNIP--FGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G VV A + D ++ G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTSDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + LS+A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|73916756|gb|AAZ93246.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 65.1 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAG--PVVVAAIILDPNNIP--FGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G VV A + D ++ G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTSDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + LS+A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|209559934|ref|YP_002286406.1| ribonuclease HIII [Streptococcus pyogenes NZ131] gi|226741383|sp|B5XI49|RNH3_STRPZ RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|209541135|gb|ACI61711.1| Ribonuclease HIII [Streptococcus pyogenes NZ131] Length = 300 Score = 64.7 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 31/200 (15%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSKK+S K +++ + Sbjct: 84 PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143 Query: 81 ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI----- 125 S + ++ +I A + + + P+ +ID + Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203 Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P K +S L++A +SIIA R+ + + D G+ G Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260 Query: 180 PTAKHQ---QVIKEKGPSCI 196 +A + Q++ G S + Sbjct: 261 GSASDKVASQLLAAYGMSSL 280 >gi|139473162|ref|YP_001127877.1| ribonuclease HIII [Streptococcus pyogenes str. Manfredo] gi|166226677|sp|A2RCQ5|RNH3_STRPG RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|134271408|emb|CAM29628.1| ribonuclease HIII [Streptococcus pyogenes str. Manfredo] Length = 300 Score = 64.7 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 31/200 (15%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSKK+S K +++ + Sbjct: 84 PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143 Query: 81 ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI----- 125 S + ++ +I A + + + P+ +ID + Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203 Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P K +S L++A +SIIA R+ + + D G+ G Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260 Query: 180 PTAKHQ---QVIKEKGPSCI 196 +A + Q++ G S + Sbjct: 261 GSASDKVASQLLAAYGMSSL 280 >gi|94989199|ref|YP_597300.1| ribonuclease HIII [Streptococcus pyogenes MGAS9429] gi|94993086|ref|YP_601185.1| ribonuclease HIII [Streptococcus pyogenes MGAS2096] gi|166226673|sp|Q1JA20|RNH3_STRPB RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|166226674|sp|Q1JK67|RNH3_STRPC RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|94542707|gb|ABF32756.1| ribonuclease HIII [Streptococcus pyogenes MGAS9429] gi|94546594|gb|ABF36641.1| Ribonuclease HIII [Streptococcus pyogenes MGAS2096] Length = 300 Score = 64.7 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 31/200 (15%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSKK+S K +++ + Sbjct: 84 PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143 Query: 81 ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI----- 125 S + ++ +I A + + + P+ +ID + Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203 Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P K +S L++A +SIIA R+ + + D G+ G Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260 Query: 180 PTAKHQ---QVIKEKGPSCI 196 +A + Q++ G S + Sbjct: 261 GSASDKVASQLLAAYGMSSL 280 >gi|15675667|ref|NP_269841.1| ribonuclease HIII [Streptococcus pyogenes M1 GAS] gi|19746773|ref|NP_607909.1| ribonuclease HIII [Streptococcus pyogenes MGAS8232] gi|50914922|ref|YP_060894.1| ribonuclease HIII [Streptococcus pyogenes MGAS10394] gi|71911377|ref|YP_282927.1| ribonuclease HIII [Streptococcus pyogenes MGAS5005] gi|54039253|sp|P66678|RNH3_STRP8 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|54042176|sp|P66677|RNH3_STRP1 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|73917858|sp|Q5XA52|RNH3_STRP6 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|13622880|gb|AAK34562.1| putative ribonuclease HIII [Streptococcus pyogenes M1 GAS] gi|19749005|gb|AAL98408.1| putative ribonuclease HIII [Streptococcus pyogenes MGAS8232] gi|50903996|gb|AAT87711.1| Ribonuclease HIII [Streptococcus pyogenes MGAS10394] gi|71854159|gb|AAZ52182.1| ribonuclease HIII [Streptococcus pyogenes MGAS5005] Length = 300 Score = 64.7 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 31/200 (15%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSKK+S K +++ + Sbjct: 84 PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143 Query: 81 ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI----- 125 S + ++ +I A + + + P+ +ID + Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203 Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P K +S L++A +SIIA R+ + + D G+ G Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260 Query: 180 PTAKHQ---QVIKEKGPSCI 196 +A + Q++ G S + Sbjct: 261 GSASDKVASQLLAAYGMSSL 280 >gi|56808625|ref|ZP_00366352.1| COG1039: Ribonuclease HIII [Streptococcus pyogenes M49 591] Length = 300 Score = 64.7 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 31/200 (15%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSKK+S K +++ + Sbjct: 84 PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143 Query: 81 ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI----- 125 S + ++ +I A + + + P+ +ID + Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203 Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P K +S L++A +SIIA R+ + + D G+ G Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260 Query: 180 PTAKHQ---QVIKEKGPSCI 196 +A + Q++ G S + Sbjct: 261 GSASDKVASQLLAAYGMSSL 280 >gi|306826719|ref|ZP_07460021.1| ribonuclease HIII [Streptococcus pyogenes ATCC 10782] gi|304431008|gb|EFM34015.1| ribonuclease HIII [Streptococcus pyogenes ATCC 10782] Length = 300 Score = 64.7 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 31/200 (15%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSKK+S K +++ + Sbjct: 84 PIVGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143 Query: 81 ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI----- 125 S + ++ +I A + + + P+ +ID + Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203 Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P K +S L++A +SIIA R+ + + D G+ G Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260 Query: 180 PTAKHQ---QVIKEKGPSCI 196 +A + Q++ G S + Sbjct: 261 GSASDKVASQLLAAYGMSSL 280 >gi|73916714|gb|AAZ93225.1| RNase HII [Streptococcus pneumoniae] gi|73916734|gb|AAZ93235.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 64.7 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREE----LYEKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K + L EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + LS+A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|73916718|gb|AAZ93227.1| RNase HII [Streptococcus pneumoniae] gi|73916732|gb|AAZ93234.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 64.7 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEKKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|15900322|ref|NP_344926.1| ribonuclease HIII [Streptococcus pneumoniae TIGR4] gi|111657623|ref|ZP_01408357.1| hypothetical protein SpneT_02001177 [Streptococcus pneumoniae TIGR4] gi|18314321|sp|O07874|RNH3_STRPN RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|14971871|gb|AAK74566.1| ribonuclease HIII [Streptococcus pneumoniae TIGR4] Length = 293 Score = 64.7 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREE----LYEKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K + L EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + LS+A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|148996807|ref|ZP_01824525.1| ribonuclease HIII [Streptococcus pneumoniae SP11-BS70] gi|168576877|ref|ZP_02722727.1| ribonuclease hiii [Streptococcus pneumoniae MLV-016] gi|307067052|ref|YP_003876018.1| ribonuclease HIII [Streptococcus pneumoniae AP200] gi|147757382|gb|EDK64421.1| ribonuclease HIII [Streptococcus pneumoniae SP11-BS70] gi|183577460|gb|EDT97988.1| ribonuclease hiii [Streptococcus pneumoniae MLV-016] gi|306408589|gb|ADM84016.1| Ribonuclease HIII [Streptococcus pneumoniae AP200] Length = 293 Score = 64.7 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEKKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|329766419|ref|ZP_08257963.1| Ribonuclease HII [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137018|gb|EGG41310.1| Ribonuclease HII [Candidatus Nitrosoarchaeum limnia SFB1] Length = 62 Score = 64.3 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 37/53 (69%), Gaps = 4/53 (7%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK 74 + G+D+ GRG++ GP+V+A I L +++ G+ DSK+++ K REELY+K Sbjct: 10 ICGVDDAGRGSMLGPLVIAGISLKKSDVSKLKLLGVKDSKQLTPKLREELYKK 62 >gi|196232748|ref|ZP_03131599.1| ribonuclease HIII [Chthoniobacter flavus Ellin428] gi|196223208|gb|EDY17727.1| ribonuclease HIII [Chthoniobacter flavus Ellin428] Length = 319 Score = 64.3 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 25/182 (13%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHK 66 E ++ + P G+DE G+G GP+V+A D + GI DSKKI Sbjct: 84 RLGYEDVLNPEMFAPHFGVDESGKGDFFGPLVIAGCYTDRGITRTLMEAGIQDSKKIGSD 143 Query: 67 KREE-LYEKITSS--AIISISSASHQYIDKH-----NIHKATLDAIYHAVEN-LQVIPR- 116 KR L I + A+ S+ + + ++ N+++ +EN L++ P Sbjct: 144 KRIRDLAAIIKRTQGAVHSVVAIGPERYNQLYAKFGNLNRLLAWGHARVIENLLEIRPDC 203 Query: 117 -SALIDGRSIP---------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 AL D + P + Q K +S +++AAASI+A+ +R + Sbjct: 204 PRALSDQFANPALIKRALLEKGRAIQLDQRTKAES-DVAVAAASILAREAFIDWLRNKGR 262 Query: 167 KY 168 ++ Sbjct: 263 EF 264 >gi|94995019|ref|YP_603117.1| ribonuclease HIII [Streptococcus pyogenes MGAS10750] gi|166226676|sp|Q1J513|RNH3_STRPF RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|94548527|gb|ABF38573.1| Ribonuclease HIII [Streptococcus pyogenes MGAS10750] Length = 300 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 31/200 (15%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSKK+S K +++ + Sbjct: 84 PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143 Query: 81 ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI----- 125 S + ++ +I A + + + P+ +ID + Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203 Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P K +S L++A +SIIA R+ + + D G+ G Sbjct: 204 KHLKKEKSHFPNPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260 Query: 180 PTAKHQ---QVIKEKGPSCI 196 +A + Q++ G S + Sbjct: 261 GSASDKVASQLLAAYGMSSL 280 >gi|325689446|gb|EGD31451.1| ribonuclease HIII [Streptococcus sanguinis SK115] gi|325693764|gb|EGD35683.1| ribonuclease HIII [Streptococcus sanguinis SK150] Length = 296 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 76/199 (38%), Gaps = 30/199 (15%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKI 75 +N + G DEVG G+ G + V A + P+ G+ DSK ++ K +L + Sbjct: 78 SQNFALI-GTDEVGNGSYFGGLTVVASFVTPDQHDFLRKLGVGDSKTLNDSKIRQLAPVL 136 Query: 76 TS----SAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ ++ I + ++ A + + + + P +ID + + Sbjct: 137 KEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKGINPEKIVIDAFTSQQ 196 Query: 128 D-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + P + K + L++A +SIIA RD + + G+ Sbjct: 197 NYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIA---RDLFLENLENLSQELGYTLP 253 Query: 177 VGYPTA-KHQ--QVIKEKG 192 G + H Q+++ G Sbjct: 254 SGAGSKSDHVASQILQAYG 272 >gi|115289020|gb|ABI85515.1| RnhB [Haemophilus influenzae] gi|115289065|gb|ABI85546.1| RnhB [Haemophilus influenzae] gi|115289068|gb|ABI85548.1| RnhB [Haemophilus influenzae] gi|115289071|gb|ABI85550.1| RnhB [Haemophilus influenzae] Length = 40 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 18/34 (52%) Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 F H GYPT H + + E G HR +F P++ Sbjct: 2 FAKHKGYPTKLHLEKLAEFGTLPQHRRSFAPVKK 35 >gi|115289044|gb|ABI85532.1| RnhB [Haemophilus influenzae] Length = 40 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 18/34 (52%) Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 F H GYPT H + + E G HR +F P++ Sbjct: 2 FAKHKGYPTKLHLEKLAEFGALPQHRRSFAPVKK 35 >gi|194398393|ref|YP_002037085.1| ribonuclease HIII [Streptococcus pneumoniae G54] gi|226741382|sp|B5E7E5|RNH3_STRP4 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|194358060|gb|ACF56508.1| ribonuclease HIII [Streptococcus pneumoniae G54] gi|332204430|gb|EGJ18495.1| ribonuclease HIII [Streptococcus pneumoniae GA47901] Length = 293 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|73916716|gb|AAZ93226.1| RNase HII [Streptococcus pneumoniae] gi|73916738|gb|AAZ93237.1| RNase HII [Streptococcus pneumoniae] gi|73916780|gb|AAZ93258.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|73916752|gb|AAZ93244.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|73916708|gb|AAZ93222.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|73916712|gb|AAZ93224.1| RNase HII [Streptococcus pneumoniae] gi|73916728|gb|AAZ93232.1| RNase HII [Streptococcus pneumoniae] gi|73916730|gb|AAZ93233.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|73916792|gb|AAZ93264.1| RNase HII [Streptococcus pneumoniae] gi|73916810|gb|AAZ93273.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|21911127|ref|NP_665395.1| ribonuclease HIII [Streptococcus pyogenes MGAS315] gi|28895188|ref|NP_801538.1| ribonuclease HIII [Streptococcus pyogenes SSI-1] gi|25091193|sp|Q8K5Y5|RNH3_STRP3 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|21905338|gb|AAM80198.1| putative ribonuclease HIII [Streptococcus pyogenes MGAS315] gi|28810433|dbj|BAC63371.1| putative ribonuclease HIII [Streptococcus pyogenes SSI-1] Length = 300 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 31/200 (15%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSKK+S K +++ + Sbjct: 84 PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143 Query: 81 ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI----- 125 S + ++ +I A + + + P+ +ID + Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203 Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P K +S L++A +SIIA R+ + + D G+ G Sbjct: 204 KHLKKEKNHFPDPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260 Query: 180 PTAKHQ---QVIKEKGPSCI 196 +A + Q++ G S + Sbjct: 261 GSASDKVASQLLAAYGMSSL 280 >gi|15902409|ref|NP_357959.1| ribonuclease HIII [Streptococcus pneumoniae R6] gi|116516121|ref|YP_815878.1| ribonuclease HIII [Streptococcus pneumoniae D39] gi|148988156|ref|ZP_01819619.1| ribonuclease HIII [Streptococcus pneumoniae SP6-BS73] gi|169834316|ref|YP_001693911.1| ribonuclease HIII [Streptococcus pneumoniae Hungary19A-6] gi|221231270|ref|YP_002510422.1| ribonuclease HIII [Streptococcus pneumoniae ATCC 700669] gi|30316193|sp|P59660|RNH3_STRR6 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|122279236|sp|Q04M70|RNH3_STRP2 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|238688318|sp|B1I9J8|RNH3_STRPI RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|254808015|sp|B8ZLH1|RNH3_STRPJ RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|2209339|gb|AAC45437.1| ribonuclease HII [Streptococcus pneumoniae] gi|15457925|gb|AAK99169.1| Ribonuclease HII [Streptococcus pneumoniae R6] gi|73916706|gb|AAZ93221.1| RNase HII [Streptococcus pneumoniae] gi|73916762|gb|AAZ93249.1| RNase HII [Streptococcus pneumoniae] gi|73916764|gb|AAZ93250.1| RNase HII [Streptococcus pneumoniae] gi|73916766|gb|AAZ93251.1| RNase HII [Streptococcus pneumoniae] gi|73916768|gb|AAZ93252.1| RNase HII [Streptococcus pneumoniae] gi|73916770|gb|AAZ93253.1| RNase HII [Streptococcus pneumoniae] gi|73916774|gb|AAZ93255.1| RNase HII [Streptococcus pneumoniae] gi|73916776|gb|AAZ93256.1| RNase HII [Streptococcus pneumoniae] gi|73916778|gb|AAZ93257.1| RNase HII [Streptococcus pneumoniae] gi|73916790|gb|AAZ93263.1| RNase HII [Streptococcus pneumoniae] gi|73916794|gb|AAZ93265.1| RNase HII [Streptococcus pneumoniae] gi|73916796|gb|AAZ93266.1| RNase HII [Streptococcus pneumoniae] gi|73916798|gb|AAZ93267.1| RNase HII [Streptococcus pneumoniae] gi|73916802|gb|AAZ93269.1| RNase HII [Streptococcus pneumoniae] gi|73916804|gb|AAZ93270.1| RNase HII [Streptococcus pneumoniae] gi|73916806|gb|AAZ93271.1| RNase HII [Streptococcus pneumoniae] gi|73916814|gb|AAZ93275.1| RNase HII [Streptococcus pneumoniae] gi|116076697|gb|ABJ54417.1| ribonuclease HIII [Streptococcus pneumoniae D39] gi|147926620|gb|EDK77693.1| ribonuclease HIII [Streptococcus pneumoniae SP6-BS73] gi|168996818|gb|ACA37430.1| ribonuclease hiii [Streptococcus pneumoniae Hungary19A-6] gi|220673730|emb|CAR68229.1| ribonuclease HIII [Streptococcus pneumoniae ATCC 700669] Length = 290 Score = 64.3 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|115289026|gb|ABI85519.1| RnhB [Haemophilus influenzae] Length = 40 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 18/34 (52%) Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 F H GYPT H + + E G HR +F P++ Sbjct: 2 FAQHKGYPTKLHLEKLAEFGALPQHRRSFAPVKK 35 >gi|149023691|ref|ZP_01836171.1| ribonuclease HIII [Streptococcus pneumoniae SP23-BS72] gi|147929628|gb|EDK80620.1| ribonuclease HIII [Streptococcus pneumoniae SP23-BS72] Length = 293 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|225853979|ref|YP_002735491.1| ribonuclease HIII [Streptococcus pneumoniae JJA] gi|254808017|sp|C1CCH0|RNH3_STRZJ RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|225722438|gb|ACO18291.1| ribonuclease hiii [Streptococcus pneumoniae JJA] Length = 293 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|329942650|ref|ZP_08291429.1| ribonuclease HIII [Chlamydophila psittaci Cal10] gi|332287245|ref|YP_004422146.1| ribonuclease HIII [Chlamydophila psittaci 6BC] gi|313847833|emb|CBY16826.1| ribonuclease hIII [Chlamydophila psittaci RD1] gi|325506576|gb|ADZ18214.1| ribonuclease HIII [Chlamydophila psittaci 6BC] gi|328814910|gb|EGF84899.1| ribonuclease HIII [Chlamydophila psittaci Cal10] gi|328914491|gb|AEB55324.1| ribonuclease HIII [Chlamydophila psittaci 6BC] Length = 300 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 66/173 (38%), Gaps = 26/173 (15%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKKREELYEK 74 EK++ P G+DE G+G GP+ +A + N I DSK ++ + L + Sbjct: 82 EKDLRPRLGVDESGKGDFFGPLCIAGVYARDAETLKNLYKTKIQDSKMLNDNQILSLAKT 141 Query: 75 ITSSAIISISSASHQYIDK-----HNIHKATLDAIYHAVENLQVIP-------------- 115 I + + + + ++ HN++ A ++ L P Sbjct: 142 IRACSTYDVMILYPEKYNELYAKFHNLNILLAWAHATIIDQLAPRPSGEVFAISDQFASS 201 Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 S L++ + ++ + + +AAASI+A+ + +++ Sbjct: 202 ESVLLEALR-KKSTDISVIQRVRAEQ-DIVVAAASILAREAFINTITKLEQRF 252 >gi|168490684|ref|ZP_02714827.1| ribonuclease hiii [Streptococcus pneumoniae CDC0288-04] gi|73916720|gb|AAZ93228.1| RNase HII [Streptococcus pneumoniae] gi|183574806|gb|EDT95334.1| ribonuclease hiii [Streptococcus pneumoniae CDC0288-04] gi|332202313|gb|EGJ16382.1| ribonuclease HIII [Streptococcus pneumoniae GA41317] Length = 290 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAG--PVVVAAIILDPNNIP--FGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G VV A + D ++ G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTSDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|323353469|ref|ZP_08088002.1| ribonuclease HIII [Streptococcus sanguinis VMC66] gi|322121415|gb|EFX93178.1| ribonuclease HIII [Streptococcus sanguinis VMC66] gi|324990323|gb|EGC22261.1| ribonuclease HIII [Streptococcus sanguinis SK353] gi|325688397|gb|EGD30415.1| ribonuclease HIII [Streptococcus sanguinis SK72] Length = 296 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 77/199 (38%), Gaps = 30/199 (15%) Query: 20 EKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKI 75 +N + G DEVG G+ G + VVA+ + + G+ DSK ++ K +L + Sbjct: 78 SQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDSKIRQLAPVL 136 Query: 76 TS----SAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ ++ I + ++ A + + + + P +ID + + Sbjct: 137 KEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKGINPEKIVIDAFTSQQ 196 Query: 128 D-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + P + K + L++A +SIIA RD + + G+ Sbjct: 197 NYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIA---RDLFLENLENLSQELGYTLP 253 Query: 177 VGYPTA-KHQ--QVIKEKG 192 G + H Q+++ G Sbjct: 254 SGAGSKSDHVASQILQAHG 272 >gi|89898516|ref|YP_515626.1| ribonuclease HIII [Chlamydophila felis Fe/C-56] gi|123483040|sp|Q253Q7|RNH3_CHLFF RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|89331888|dbj|BAE81481.1| ribonuclease HII [Chlamydophila felis Fe/C-56] Length = 300 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 65/173 (37%), Gaps = 26/173 (15%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHKKREELYEK 74 E ++ P G+DE G+G GP+ +A + I DSK ++ + L + Sbjct: 82 EADLRPRLGVDESGKGDFFGPLCIAGVYARDEETLKSLYKTKIQDSKLLNDAQILSLAKT 141 Query: 75 ITSSAIISISSASHQYIDK-----HNIHKATLDAIYHAVENLQVIP-------------- 115 I SS + + ++ HN++ A ++ L P Sbjct: 142 IRSSCTYDVMILYPEKYNELYGKFHNLNILLAWAHATIIDKLAPRPSGEVFAISDQFASS 201 Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 S L++ ++ ++ + + +AAASI+A+ M +++ Sbjct: 202 ESVLLNALK-KKNTDISVIQKVRAEQ-DIVVAAASILAREAFITTMTNLEQRF 252 >gi|291320114|ref|YP_003515372.1| ribonuclease HII [Mycoplasma agalactiae] gi|290752443|emb|CBH40414.1| Ribonuclease HII (RNase HII) [Mycoplasma agalactiae] Length = 238 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 57/196 (29%), Positives = 86/196 (43%), Gaps = 39/196 (19%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHK 66 F++++ + E + GIDEVG G GP+ A+ +D N+ GI DSKKIS K Sbjct: 5 DFDVDSNLLEN--KSIIGIDEVGVGDYFGPLCACAVFIDAKNVSKVAQLGIKDSKKISDK 62 Query: 67 KREELYEKITSSAIISISSAS------HQYIDKHNIHKATLDAIYHAVENLQV-----IP 115 K +EL K+ SS +IS S A ++ +N H + A+ +L Sbjct: 63 KIKELAAKLKSSKLISYSLAHLNPSGYNKLNKNYNAHILKMFVHLKAINSLSAKLENDKH 122 Query: 116 RSALIDGRSIPEDL-----------PCQAFAVIKGD--------SISLSIAAASIIAKVT 156 LID + E++ F I D S S+S+AAASI+A Sbjct: 123 DYILIDKYASAENMLKYYNELVISNNWANFKEINEDVLIANNAESYSISVAAASILA--- 179 Query: 157 RDRLMRIAHKKYPDYG 172 RD+ + + K +Y Sbjct: 180 RDQFLTLIAKMNEEYN 195 >gi|115289047|gb|ABI85534.1| RnhB [Haemophilus influenzae] gi|115289050|gb|ABI85536.1| RnhB [Haemophilus influenzae] gi|115289053|gb|ABI85538.1| RnhB [Haemophilus influenzae] Length = 40 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 18/34 (52%) Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 F H GYPT H + + E G HR +F P++ Sbjct: 2 FAKHKGYPTKLHLEKLAELGALPQHRRSFAPVKK 35 >gi|327468592|gb|EGF14071.1| ribonuclease HIII [Streptococcus sanguinis SK330] Length = 296 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 77/199 (38%), Gaps = 30/199 (15%) Query: 20 EKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKI 75 +N + G DEVG G+ G + VVA+ + + G+ DSK ++ K +L + Sbjct: 78 SQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDSKIRQLAPVL 136 Query: 76 TS----SAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ ++ I + ++ A + + + + P +ID + + Sbjct: 137 KEKIAHQALLLSPEKYNEVIASVYNAVSVKVALHNQAIYLLLQKGINPEKIVIDAFTSQQ 196 Query: 128 D-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + P + K + L++A +SIIA RD + + G+ Sbjct: 197 NYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIA---RDLFLENLENLSQELGYTLP 253 Query: 177 VGYPTA-KHQ--QVIKEKG 192 G + H Q+++ G Sbjct: 254 SGAGSKSDHVASQILQAYG 272 >gi|324992151|gb|EGC24073.1| ribonuclease HIII [Streptococcus sanguinis SK405] gi|327459468|gb|EGF05814.1| ribonuclease HIII [Streptococcus sanguinis SK1] Length = 296 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 77/199 (38%), Gaps = 30/199 (15%) Query: 20 EKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKI 75 +N + G DEVG G+ G + VVA+ + + G+ DSK ++ K +L + Sbjct: 78 SQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDSKIRQLAPVL 136 Query: 76 TS----SAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ ++ I + ++ A + + + + P +ID + + Sbjct: 137 KEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKGINPEKIVIDAFTSQQ 196 Query: 128 D-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + P + K + L++A +SIIA RD + + G+ Sbjct: 197 NYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIA---RDLFLENLENLSQELGYTLP 253 Query: 177 VGYPTA-KHQ--QVIKEKG 192 G + H Q+++ G Sbjct: 254 SGAGSKSDHVASQILQAYG 272 >gi|115289023|gb|ABI85517.1| RnhB [Haemophilus influenzae] gi|115289029|gb|ABI85521.1| RnhB [Haemophilus influenzae] gi|115289033|gb|ABI85524.1| RnhB [Haemophilus influenzae] gi|115289037|gb|ABI85527.1| RnhB [Haemophilus influenzae] gi|115289041|gb|ABI85530.1| RnhB [Haemophilus influenzae] gi|115289056|gb|ABI85540.1| RnhB [Haemophilus influenzae] gi|115289059|gb|ABI85542.1| RnhB [Haemophilus influenzae] gi|115289062|gb|ABI85544.1| RnhB [Haemophilus influenzae] gi|115289074|gb|ABI85552.1| RnhB [Haemophilus influenzae] gi|115289077|gb|ABI85554.1| RnhB [Haemophilus influenzae] gi|115289080|gb|ABI85556.1| RnhB [Haemophilus influenzae] gi|115289084|gb|ABI85559.1| RnhB [Haemophilus influenzae] gi|115289086|gb|ABI85560.1| RnhB [Haemophilus influenzae] Length = 40 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 18/34 (52%) Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 F H GYPT H + + E G HR +F P++ Sbjct: 2 FAQHKGYPTKLHLEKLAELGALPQHRRSFAPVKK 35 >gi|219850709|ref|YP_002465141.1| ribonuclease HIII [Methanosphaerula palustris E1-9c] gi|219544968|gb|ACL15418.1| ribonuclease HIII [Methanosphaerula palustris E1-9c] Length = 318 Score = 63.5 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 46/195 (23%), Positives = 73/195 (37%), Gaps = 30/195 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAI 80 + G DE G+G GP+VVAA+ LD G+ DSK +S ++ L + A+ Sbjct: 105 LLIGSDESGKGDYFGPLVVAAVCLDQQGAARLRAAGVTDSKALSDQENLSLASVVRKVAV 164 Query: 81 -ISISSASHQYIDKHNIHKA-------TLDAIYHAVENLQVIPR----SALID---GRSI 125 IS+ + + A L A HA +V + L+D G + Sbjct: 165 SISVKVLLPEEYNARYAATARAGGTLNDLLASVHAEAIQRVAAESGCTTVLVDQFAGERV 224 Query: 126 PEDL---PCQAFAVIKGDSISLS--IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 +DL V++ +AAAS++A R R + Y G Sbjct: 225 LDDLLAVRYPGLRVVQRPRAEQETPVAAASVLA---RARFLEDLDLLGMPYNVHLLKGAS 281 Query: 181 ---TAKHQQVIKEKG 192 T + Q++ G Sbjct: 282 AGVTKQAAQMVDRYG 296 >gi|332686770|ref|YP_004456544.1| ribonuclease HIII [Melissococcus plutonius ATCC 35311] gi|332370779|dbj|BAK21735.1| ribonuclease HIII [Melissococcus plutonius ATCC 35311] Length = 309 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 30/148 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII 81 V G DEVG G+ GP+ V A + +NI G+ DSK ++ + +L E + Sbjct: 93 VLGSDEVGNGSYFGPLTVCAAYVAKDNIKMLKAAGVKDSKNLTDNRIMQLAEMLKEKIPF 152 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVE------------NLQVIPRSALIDGRSIPEDL 129 + + + K+N + T +A++ V + P + LID + P++ Sbjct: 153 KLLIVTPE---KYNQIQTTYNAVHMKVALHNQAIALLLAKLAPIKPEAILIDQFTSPKNY 209 Query: 130 -----------PCQAFAVIKGDSISLSI 146 + KG+S +S+ Sbjct: 210 YNYVQSEQRQVKAPIYFTTKGESYHVSV 237 >gi|166154229|ref|YP_001654347.1| ribonuclease HIII [Chlamydia trachomatis 434/Bu] gi|166155104|ref|YP_001653359.1| ribonuclease HIII [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|255348370|ref|ZP_05380377.1| ribonuclease HIII [Chlamydia trachomatis 70] gi|255502911|ref|ZP_05381301.1| ribonuclease HIII [Chlamydia trachomatis 70s] gi|255506580|ref|ZP_05382219.1| ribonuclease HIII [Chlamydia trachomatis D(s)2923] gi|301335477|ref|ZP_07223721.1| ribonuclease HIII [Chlamydia trachomatis L2tet1] gi|226741381|sp|B0BAZ4|RNH3_CHLTB RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|238687433|sp|B0B9B5|RNH3_CHLT2 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|165930217|emb|CAP03702.1| ribonuclease HIII [Chlamydia trachomatis 434/Bu] gi|165931092|emb|CAP06656.1| ribonuclease HIII [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|296438311|gb|ADH20464.1| ribonuclease HIII [Chlamydia trachomatis E/11023] Length = 300 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 45/216 (20%), Positives = 75/216 (34%), Gaps = 34/216 (15%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-----NDSKKISHKKREELYEK 74 ++++ G+DE G+G GP+ A + + DSK I K L + Sbjct: 82 QQDLRSRIGVDESGKGDFFGPLCTAGVYASSPQAIEALYKTSICDSKLIPDAKILSLAQN 141 Query: 75 ITSSAIISISSASHQYIDKHNIHK---ATLDAIYHA--VENLQVIPR---SALIDGRSIP 126 I S + + + + + +L A HA ++NL P A+ D + Sbjct: 142 IRSLCACKVITLFPEKYNALYANFQNLNSLLAWTHATIIDNLAPHPAGAVFAISDQFASS 201 Query: 127 EDLPCQAFAVIKGD---------SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 E + QA + D + +AAASI+A R+ + H Y Sbjct: 202 ERVLLQAVRKKRSDIELIQRHRAEQDVVVAAASILA---REAFLSSIHALESQYQIRLLK 258 Query: 178 GYPTAKHQQV---IKEKG------PSCIHRLTFRPL 204 G Q+ + KG H TF + Sbjct: 259 GASGKVKQRAKEILHNKGQVVLEKVCKTHFKTFNEV 294 >gi|218961973|ref|YP_001741748.1| putative Ribonuclease H [Candidatus Cloacamonas acidaminovorans] gi|167730630|emb|CAO81542.1| putative Ribonuclease H [Candidatus Cloacamonas acidaminovorans] Length = 327 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 28/169 (16%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKI---TSSA 79 G DE G+G GP+VV A + G+ DSKK++ ++ + + + + ++ Sbjct: 113 IGSDECGKGDYFGPLVVCAFAYKRDSENEFKNVGVKDSKKLNSEEIKRIAQYLYKNYANC 172 Query: 80 IISISSASHQYIDKHNIHKA------TLDAIYH-----AVENLQVIPRSALIDGRSI--- 125 I I +Y + KA L A H A++ + L+D S+ Sbjct: 173 IHCIVIKPVKYNELIAKFKAQKKNLNDLLAWLHSTAIIALQKNHPESQGVLVDQFSVSHK 232 Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 + P G I ++AAASIIA+ K Y Sbjct: 233 TKYALQEKQFPLPCIERT-GAEIDPAVAAASIIARYQFLEAFEAMRKFY 280 >gi|227514539|ref|ZP_03944588.1| ribonuclease H [Lactobacillus fermentum ATCC 14931] gi|260663396|ref|ZP_05864287.1| ribonuclease HIII [Lactobacillus fermentum 28-3-CHN] gi|227087096|gb|EEI22408.1| ribonuclease H [Lactobacillus fermentum ATCC 14931] gi|260552248|gb|EEX25300.1| ribonuclease HIII [Lactobacillus fermentum 28-3-CHN] Length = 301 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 12/110 (10%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 W V G DEVG G+ GP+ AA+ + + + G+ DSKK++ + L ++I ++ Sbjct: 88 WSVLGSDEVGVGSYFGPLTTAAVFVAADQVASLTQLGVADSKKLTDPEIIRLAKQIMATC 147 Query: 80 IISI----SSASHQYIDKHNIHKATLDAI----YHAVENLQVIPRSALID 121 ++ +A + + K+N + +E L P++ LID Sbjct: 148 PVTYLNLMPAAYNARMKKYNQAQLKALCHNYVLAKTLERLATKPQAILID 197 >gi|309799726|ref|ZP_07693942.1| ribonuclease hiii [Streptococcus infantis SK1302] gi|308116642|gb|EFO54102.1| ribonuclease hiii [Streptococcus infantis SK1302] Length = 293 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 78/195 (40%), Gaps = 29/195 (14%) Query: 24 WPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKI 75 +P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K +L E+I Sbjct: 78 FPLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQLAPLLKERI 137 Query: 76 TSSAIISISSASHQYIDKH----NIHKATLDAIYHAVENLQVIPRSALIDGRSIPED--- 128 A++ S ++ I + ++ A + + +V P +ID + ++ Sbjct: 138 QHQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQKRVQPEKIVIDAFTSTQNYEK 197 Query: 129 --------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 K + L++A +SIIA RD + + G+ G Sbjct: 198 YLKNEANHFSNPVSLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAG 254 Query: 181 TAKHQQV---IKEKG 192 TA + ++ G Sbjct: 255 TASDKVASQILRAYG 269 >gi|299783000|gb|ADJ40998.1| Ribonuclease HIII (RNase HIII) [Lactobacillus fermentum CECT 5716] Length = 301 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 12/110 (10%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 W V G DEVG G+ GP+ AA+ + + + G+ DSKK++ + L ++I ++ Sbjct: 88 WSVLGSDEVGVGSYFGPLTTAAVFVAADQVASLTQLGVADSKKLTDPEIIRLAKQIMATC 147 Query: 80 IISI----SSASHQYIDKHNIHKATLDAI----YHAVENLQVIPRSALID 121 ++ +A + + K+N + +E L P++ LID Sbjct: 148 PVTYLNLMPAAYNARMKKYNQAQLKALCHNYVLAKTLERLATKPQAILID 197 >gi|184155001|ref|YP_001843341.1| ribonuclease HIII [Lactobacillus fermentum IFO 3956] gi|238692957|sp|B2GB29|RNH3_LACF3 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|183226345|dbj|BAG26861.1| ribonuclease HIII [Lactobacillus fermentum IFO 3956] Length = 301 Score = 63.2 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 12/110 (10%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 W V G DEVG G+ GP+ AA+ + + + G+ DSKK++ + L ++I ++ Sbjct: 88 WSVLGSDEVGVGSYFGPLTTAAVFVAADQVASLTQLGVADSKKLTDPEIIRLAKQIMATC 147 Query: 80 IISI----SSASHQYIDKHNIHKATLDAI----YHAVENLQVIPRSALID 121 ++ +A + + K+N + +E L P++ LID Sbjct: 148 PVTYLNLMPAAYNARMKKYNQAQLKALCHNYVLAKTLERLATKPQAILID 197 >gi|168494560|ref|ZP_02718703.1| ribonuclease hiii [Streptococcus pneumoniae CDC3059-06] gi|307126617|ref|YP_003878648.1| ribonuclease hiii [Streptococcus pneumoniae 670-6B] gi|183575525|gb|EDT96053.1| ribonuclease hiii [Streptococcus pneumoniae CDC3059-06] gi|306483679|gb|ADM90548.1| ribonuclease hiii [Streptococcus pneumoniae 670-6B] Length = 293 Score = 63.2 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+I TRD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSVI---TRDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|171779238|ref|ZP_02920209.1| hypothetical protein STRINF_01086 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282294|gb|EDT47721.1| hypothetical protein STRINF_01086 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 299 Score = 63.2 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 26/180 (14%) Query: 24 WPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELY----EKI 75 P+ G DEVG G+ G + VVA+ + ++ G++DSK ++ K ++ EKI Sbjct: 82 MPLIGSDEVGNGSYFGGLAVVASFVTPDDHALLKKLGVDDSKNLTDSKIRQIAPILEEKI 141 Query: 76 TSSAIISISSASHQYIDKHNIHK------ATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 A++ +Q + K +H A + + + V P +ID + ++ Sbjct: 142 KHKALLLSPQKYNQVVGKGKMHNAVSVKVALHNQAIYLLLQDGVKPEKIVIDAFTSRQNY 201 Query: 130 PCQAFAVI-----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + K + L++A +SIIA+ + ++ Y S G Sbjct: 202 EKYLKNEVNHFDNPLTLEEKAEGKYLAVAVSSIIARNLFLENLDKLSQEV-QYKLPSGAG 260 >gi|320547504|ref|ZP_08041790.1| ribonuclease HIII [Streptococcus equinus ATCC 9812] gi|320447849|gb|EFW88606.1| ribonuclease HIII [Streptococcus equinus ATCC 9812] Length = 299 Score = 63.2 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 71/189 (37%), Gaps = 26/189 (13%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREE 70 E + P+ G DEVG G+ G + VVA+ + ++ G++DSK ++ K + Sbjct: 74 EKSSQAGQNMPLIGSDEVGNGSYFGGLAVVASFVTPDDHALLKKLGVDDSKNLTDSKIRQ 133 Query: 71 LYEK----ITSSAIISISSASHQYIDKHNIHK------ATLDAIYHAVENLQVIPRSALI 120 + I A++ +Q + K +H A + + V P +I Sbjct: 134 IAPILEKNIKHKALLLSPKKYNQVVGKGKMHNAVSVKVALHNQAIFLLLQDGVKPEKIVI 193 Query: 121 DGRSIPEDLPCQAFAVI-----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 D + ++ + K + L++A +SIIA+ + ++ Sbjct: 194 DAFTSRQNYEKYLKNEVNHFNNPLTLEEKAEGKYLAVAVSSIIARNLFLENLDKLSQEV- 252 Query: 170 DYGFDSHVG 178 Y S G Sbjct: 253 QYKLPSGAG 261 >gi|322391517|ref|ZP_08064986.1| ribonuclease HIII [Streptococcus peroris ATCC 700780] gi|321145600|gb|EFX40992.1| ribonuclease HIII [Streptococcus peroris ATCC 700780] Length = 293 Score = 63.2 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K +L EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVASFVTPDQHHFLQKLGVGDSKSLTDQKIRQLAPLLKEKIQ 138 Query: 77 SSAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I + ++ A + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGEGYNAVSVKVALHNQAIFLLLQKGVEPEKIVIDAFTSSKNYDRY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHVGY 179 K + L++A +SIIA RD + + Y S G Sbjct: 199 LKNEANHFLNPVTLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAGA 255 Query: 180 PT-AKHQQVIKEKG 192 + Q+++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|262281891|ref|ZP_06059660.1| ribonuclease HIII [Streptococcus sp. 2_1_36FAA] gi|262262345|gb|EEY81042.1| ribonuclease HIII [Streptococcus sp. 2_1_36FAA] Length = 296 Score = 63.2 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 79/196 (40%), Gaps = 29/196 (14%) Query: 23 MWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EK 74 + G DEVG G+ G + VVA+ + G+ DSK ++ +K +L EK Sbjct: 80 YQAMIGTDEVGNGSYFGGLAVVASFVTKEQEDFLRKLGVGDSKTLTDQKIRQLAPILKEK 139 Query: 75 ITSSAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRS------ 124 IT A++ +Q I + ++ A + + + + P +ID + Sbjct: 140 ITHQALLLSPKKYNQVIASGYNAVSVKVALHNQAIYLLLEKGIKPDQIVIDAFTSSTNYQ 199 Query: 125 --IPEDLPCQAFAVI---KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 + ++ + A+ K + L++A +SIIA RD + + G+ G Sbjct: 200 RYVKQERNQVSQAIHLEEKAEGKYLAVAVSSIIA---RDLFLENLEILSQELGYQLPSGA 256 Query: 180 PTA-KHQ--QVIKEKG 192 H Q++K G Sbjct: 257 GAKSDHVASQILKAYG 272 >gi|223932747|ref|ZP_03624745.1| ribonuclease HIII [Streptococcus suis 89/1591] gi|223898580|gb|EEF64943.1| ribonuclease HIII [Streptococcus suis 89/1591] Length = 296 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 76/194 (39%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITS--- 77 P+ G DEVG G+ G + VVA+ + ++ G++DSKK++ +K ++ + Sbjct: 83 PMIGTDEVGNGSYFGGLAVVASFVRPEDHAFLKSLGVDDSKKMTDQKICQIAPLLKEKIP 142 Query: 78 -SAIISISSASHQYIDK----HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ ++ I++ ++ A + + V P +ID + ++ Sbjct: 143 HQALLLSPKKYNEVIEQGYNAVSVKVALHNQAIFLLLQKGVQPEKIVIDAFTSSQNYQKY 202 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +SIIA+ + + G + G + Sbjct: 203 LKKEANQFANPVTLEEKAEGKYLAVAVSSIIARAMFLENLVQLGQL---VGMNLPSGAGS 259 Query: 182 AKHQQV---IKEKG 192 Q +K+ G Sbjct: 260 KSDQVAASILKQYG 273 >gi|225860427|ref|YP_002741936.1| ribonuclease HIII [Streptococcus pneumoniae Taiwan19F-14] gi|298229684|ref|ZP_06963365.1| ribonuclease HIII [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254632|ref|ZP_06978218.1| ribonuclease HIII [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502197|ref|YP_003724137.1| ribonuclease H [Streptococcus pneumoniae TCH8431/19A] gi|254808019|sp|C1CPR4|RNH3_STRZT RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|225727225|gb|ACO23076.1| ribonuclease hiii [Streptococcus pneumoniae Taiwan19F-14] gi|298237792|gb|ADI68923.1| ribonuclease H [Streptococcus pneumoniae TCH8431/19A] gi|327390813|gb|EGE89153.1| ribonuclease HIII [Streptococcus pneumoniae GA04375] Length = 293 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 77/194 (39%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I + ++ A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGNRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|73916754|gb|AAZ93245.1| RNase HII [Streptococcus pneumoniae] gi|73916758|gb|AAZ93247.1| RNase HII [Streptococcus pneumoniae] gi|73916760|gb|AAZ93248.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 77/194 (39%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I + ++ A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGNRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|328945874|gb|EGG40025.1| ribonuclease HIII [Streptococcus sanguinis SK1087] Length = 296 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 75/199 (37%), Gaps = 30/199 (15%) Query: 20 EKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKI 75 +N + G DEVG G+ G + VVA+ + + G+ DSK ++ K +L + Sbjct: 78 SQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDSKIRQLAPVL 136 Query: 76 TS----SAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ ++ I + ++ A + + + + P +ID + + Sbjct: 137 KEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKGINPEKIVIDAFTSQQ 196 Query: 128 D-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + P + K + L++A +SIIA RD + + G+ Sbjct: 197 NYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIA---RDLFLENLENLSQELGYTLP 253 Query: 177 VGYPTAKHQQV---IKEKG 192 G + Q ++ G Sbjct: 254 SGAGSKSDQVASQILQTYG 272 >gi|327472875|gb|EGF18302.1| ribonuclease HIII [Streptococcus sanguinis SK408] Length = 296 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 75/199 (37%), Gaps = 30/199 (15%) Query: 20 EKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKI 75 +N + G DEVG G+ G + VVA+ + + G+ DSK ++ K +L + Sbjct: 78 SQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDSKIRQLAPVL 136 Query: 76 TS----SAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ ++ I + ++ A + + + + P +ID + + Sbjct: 137 KEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKGINPEKIVIDAFTSQQ 196 Query: 128 D-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + P + K + L++A +SIIA RD + + G+ Sbjct: 197 NYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIA---RDLFLENLENLSQELGYTLP 253 Query: 177 VGYPTAKHQQV---IKEKG 192 G + Q ++ G Sbjct: 254 SGAGSKSDQVASQILQTYG 272 >gi|313678720|ref|YP_004056460.1| ribonuclease HIII [Mycoplasma bovis PG45] gi|312950718|gb|ADR25313.1| ribonuclease HIII [Mycoplasma bovis PG45] Length = 238 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 39/196 (19%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHK 66 ++E+ + E + G+DEVG G GP+ A+ +D N+ GI DSKK+S K Sbjct: 5 DLDVESSLLEN--KSIIGVDEVGVGDYFGPLCACAVFIDAQNVNKVAELGIKDSKKLSDK 62 Query: 67 KREELYEKITSSAII--SISSASHQYIDKHN-IHKATLD---AIYHAVENL-----QVIP 115 K +EL K+ +S +I S++ + +K N + A + A+ ++ + Sbjct: 63 KIKELALKLKNSGLIYYSLAHLNPSGYNKLNKSYNANILKMFVHLKAINSVVFKLKNIKY 122 Query: 116 RSALIDGR-SIPEDLPCQAFAVI------------------KGDSISLSIAAASIIAKVT 156 ID S+ L VI K +S S+S+AAASI+A Sbjct: 123 DYIFIDKYASVDNMLKYYNELVINNNWANFQEINEDILIANKAESYSVSVAAASILA--- 179 Query: 157 RDRLMRIAHKKYPDYG 172 RD+ + + K +Y Sbjct: 180 RDQFLTLVSKMNDEYN 195 >gi|225856132|ref|YP_002737643.1| ribonuclease HIII [Streptococcus pneumoniae P1031] gi|254808018|sp|C1CIQ5|RNH3_STRZP RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|225725696|gb|ACO21548.1| ribonuclease hiii [Streptococcus pneumoniae P1031] Length = 290 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 80/194 (41%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 CQAFA---------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 A K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNSISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|253751116|ref|YP_003024257.1| ribonuclease HIII [Streptococcus suis SC84] gi|253753017|ref|YP_003026157.1| ribonuclease HIII [Streptococcus suis P1/7] gi|253754840|ref|YP_003027980.1| ribonuclease HIII [Streptococcus suis BM407] gi|251815405|emb|CAZ50980.1| ribonuclease HIII [Streptococcus suis SC84] gi|251817304|emb|CAZ55036.1| ribonuclease HIII [Streptococcus suis BM407] gi|251819262|emb|CAR44544.1| ribonuclease HIII [Streptococcus suis P1/7] gi|292557671|gb|ADE30672.1| Ribonuclease HIII [Streptococcus suis GZ1] gi|319757381|gb|ADV69323.1| ribonuclease HIII [Streptococcus suis JS14] Length = 296 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 74/194 (38%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITS--- 77 P+ G DEVG G+ G + VVA + ++ G++DSKK++ +K ++ + Sbjct: 83 PMIGTDEVGNGSYFGGLAVVAGFVRPEDHSFLKSLGVDDSKKMTDQKICQIAPLLKEKIP 142 Query: 78 -SAIISISSASHQYIDK----HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ ++ I++ ++ A + + V P +ID + ++ Sbjct: 143 HQALLLSPKKYNEVIEQGYNAVSVKVALHNQAIFLLLQKGVQPEKIVIDAFTSSQNYQKY 202 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +SIIA+ + + G G + Sbjct: 203 LKKEANQFANPVTLEEKAEGRYLAVAVSSIIARSMFLENLVQLGQL---VGMHLPSGAGS 259 Query: 182 AKHQQV---IKEKG 192 Q +K+ G Sbjct: 260 KSDQVAASILKQYG 273 >gi|146317882|ref|YP_001197594.1| ribonuclease HIII [Streptococcus suis 05ZYH33] gi|146320071|ref|YP_001199782.1| ribonuclease HIII [Streptococcus suis 98HAH33] gi|145688688|gb|ABP89194.1| Ribonuclease HIII [Streptococcus suis 05ZYH33] gi|145690877|gb|ABP91382.1| Ribonuclease HIII [Streptococcus suis 98HAH33] Length = 302 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 74/194 (38%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITS--- 77 P+ G DEVG G+ G + VVA + ++ G++DSKK++ +K ++ + Sbjct: 89 PMIGTDEVGNGSYFGGLAVVAGFVRPEDHSFLKSLGVDDSKKMTDQKICQIAPLLKEKIP 148 Query: 78 -SAIISISSASHQYIDK----HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ ++ I++ ++ A + + V P +ID + ++ Sbjct: 149 HQALLLSPKKYNEVIEQGYNAVSVKVALHNQAIFLLLQKGVQPEKIVIDAFTSSQNYQKY 208 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +SIIA+ + + G G + Sbjct: 209 LKKEANQFANPVTLEEKAEGRYLAVAVSSIIARSMFLENLVQLGQL---VGMHLPSGAGS 265 Query: 182 AKHQQV---IKEKG 192 Q +K+ G Sbjct: 266 KSDQVAASILKQYG 279 >gi|332358153|gb|EGJ35983.1| ribonuclease HIII [Streptococcus sanguinis SK1056] Length = 296 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 78/199 (39%), Gaps = 30/199 (15%) Query: 20 EKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY--- 72 +N + G DEVG G+ G + VVA+ + + G+ DSK ++ +K +L Sbjct: 78 SQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDRKIRQLATVL 136 Query: 73 -EKITSSAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 EKI A++ ++ I + ++ A + + + + P +ID + + Sbjct: 137 KEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKGINPEKIVIDAFTSQQ 196 Query: 128 D-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + P + K + L++A +SIIA RD + + G+ Sbjct: 197 NYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIA---RDLFLENLENLSQELGYTLP 253 Query: 177 VGYPTAKHQQV---IKEKG 192 G + Q ++ G Sbjct: 254 SGAGSKSDQVASQILQAYG 272 >gi|73916702|gb|AAZ93219.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREE----LYEKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K + L EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDTFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|315222238|ref|ZP_07864144.1| ribonuclease HIII [Streptococcus anginosus F0211] gi|315188571|gb|EFU22280.1| ribonuclease HIII [Streptococcus anginosus F0211] Length = 296 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 79/204 (38%), Gaps = 29/204 (14%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREE 70 E + P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K + Sbjct: 72 EKTTSHRQNCPLIGTDEVGNGSYFGGLAVVASFVTPEQHDFLRKLGVGDSKTLTDQKIRQ 131 Query: 71 ----LYEKITSSAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 L EKI A++ +Q I + ++ A + + + V P +ID Sbjct: 132 IVPLLKEKIQHQALLLSPKKYNQVIASGYNAVSVKVALHNQAIYLLLQTGVQPEKIVIDA 191 Query: 123 RSIPED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 + ++ K + L++A +S+IA RD + + Sbjct: 192 FTSDKNYQKYLQQESNRFSNPITLEKKAEGKYLAVAVSSMIA---RDLFLENLENLSQEL 248 Query: 172 GFDSHVGYPTAKHQ---QVIKEKG 192 G++ G + Q+++ G Sbjct: 249 GYELPSGAGAKSDKVASQLLQAYG 272 >gi|206901146|ref|YP_002250429.1| ribonuclease HII, putative [Dictyoglomus thermophilum H-6-12] gi|206740249|gb|ACI19307.1| ribonuclease HII, putative [Dictyoglomus thermophilum H-6-12] Length = 425 Score = 62.4 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 67/170 (39%), Gaps = 26/170 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE----------LYEK 74 V G DEVG+G + GP++ +++ + I ++ K KK + + Sbjct: 83 YVLGFDEVGKGEVFGPIITCGVLIKRDYISQIPSELKTPDTKKSHDFEYWTRILSIINRY 142 Query: 75 ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL 129 I+ +I + ID+ NI++ + ++ L + +ID + E L Sbjct: 143 ISDVFFYAIDLIQPREIDRFNINQLLDLSYTKLIKRLMEGLPSGVEARVVIDDYGVGEGL 202 Query: 130 PC-----------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 + I + L + AS+IAK R+R+++ + Y Sbjct: 203 KKFLEKERKESNFEYIFAIDSEDKFLEVKLASLIAKAHRERILKFLQEIY 252 >gi|330832064|ref|YP_004400889.1| ribonuclease HIII [Streptococcus suis ST3] gi|329306287|gb|AEB80703.1| ribonuclease HIII [Streptococcus suis ST3] Length = 296 Score = 62.4 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 76/194 (39%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITS--- 77 P+ G DEVG G+ G + VVA+ + ++ G++DSKK++ +K ++ + Sbjct: 83 PMIGTDEVGNGSYFGGLAVVASFVRPEDHAFLKSLGVDDSKKMTDQKICQVAPLLKEKIP 142 Query: 78 -SAIISISSASHQYIDK----HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ ++ I++ ++ A + + V P +ID + ++ Sbjct: 143 HQALLLSPKKYNEVIEQGYNAVSVKVALHNQAIFLLLQKGVQPEKIVIDAFTSSQNYQKY 202 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +SIIA+ + + G + G + Sbjct: 203 LKKEANQFANPVTLEEKAEGKYLAVAVSSIIARAMFLENLVQLGQL---VGMNLPSGAGS 259 Query: 182 AKHQQV---IKEKG 192 Q +K+ G Sbjct: 260 KSDQVAASILKQYG 273 >gi|302023278|ref|ZP_07248489.1| ribonuclease HIII [Streptococcus suis 05HAS68] Length = 273 Score = 62.4 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 76/194 (39%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITS--- 77 P+ G DEVG G+ G + VVA+ + ++ G++DSKK++ +K ++ + Sbjct: 83 PMIGTDEVGNGSYFGGLAVVASFVRPEDHAFLKSLGVDDSKKMTDQKICQVAPLLKEKIP 142 Query: 78 -SAIISISSASHQYIDK----HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ ++ I++ ++ A + + V P +ID + ++ Sbjct: 143 HQALLLSPKKYNEVIEQGYNAVSVKVALHNQAIFLLLQKGVQPEKIVIDAFTSSQNYQKY 202 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +SIIA+ + + G + G + Sbjct: 203 LKKEANQFANPVTLEEKAEGKYLAVAVSSIIARAMFLENLVQLGQL---VGMNLPSGAGS 259 Query: 182 AKHQQV---IKEKG 192 Q +K+ G Sbjct: 260 KSDQVAASILKQYG 273 >gi|320591391|gb|EFX03830.1| ribonuclease hi large subunit [Grosmannia clavigera kw1407] Length = 304 Score = 62.4 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 30/129 (23%) Query: 103 AIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIA 153 A+ V V +D P + V K DS+ ++AAS+ A Sbjct: 107 ALIRGVLARGVRVTDVYVDTVGPPATYQKKLERVFPGLRITVAKKADSLYPCVSAASVCA 166 Query: 154 KVTRDRLMRIAHKKY-------PDYGFDSHVGYPTAKH-QQVIKE-------KGPSCIHR 198 KVTRD + + +++Y PD+G GYP+ ++ GP C R Sbjct: 167 KVTRDVALAVLYRRYGAASASEPDWG----SGYPSDGRCTAWLRRNIHPVFGWGPEC--R 220 Query: 199 LTFRPLRNL 207 ++ ++L Sbjct: 221 FSWGTAKDL 229 >gi|324994248|gb|EGC26162.1| ribonuclease HIII [Streptococcus sanguinis SK678] gi|325697911|gb|EGD39795.1| ribonuclease HIII [Streptococcus sanguinis SK160] Length = 296 Score = 62.4 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 76/199 (38%), Gaps = 30/199 (15%) Query: 20 EKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKI 75 +N + G DEVG G+ G + VVA+++ + G+ DSK ++ K +L + Sbjct: 78 SQNFALI-GTDEVGNGSYFGGLAVVASLVTPDQHDFLRKLGVGDSKTLNDSKIRQLAPVL 136 Query: 76 TS----SAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ ++ I + ++ A + + + + P +ID + + Sbjct: 137 KEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKGINPEKIVIDAFTSQQ 196 Query: 128 D-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + P + K + L++A +SIIA RD + + G+ Sbjct: 197 NYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIA---RDLFLENLENLSQELGYTLP 253 Query: 177 VGYPTAKHQQV---IKEKG 192 G + Q ++ G Sbjct: 254 SGAGSKSDQVASQILQAYG 272 >gi|110004588|emb|CAK98925.1| putative ribonuclease hIII protein [Spiroplasma citri] Length = 299 Score = 62.0 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 26/169 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKKREELYEKITSSAII 81 V G DEVG G + GP+VV A L I DSKK++ ++ L KI Sbjct: 90 VIGNDEVGVGDIFGPLVVTASYLPIATFNELSKLPIKDSKKMAKQQILSLAPKIKKMVKS 149 Query: 82 SISSASHQYIDKH-----NIHKATLDAIYHAVENL----QVIPRSALIDGR--------- 123 +++ +K N H A A+ L Q+ ++ ID Sbjct: 150 ITIIINNELYNKWYTKYQNAHIIKTLAHNQALVQLLAKYQLTNKTIFIDQFVNETKYFEY 209 Query: 124 ----SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 + + + KG+ SL+IA ++I+++ + KY Sbjct: 210 LQQTKMSSIIKDNLVFITKGEEKSLAIACSAILSRAVFLIKINELETKY 258 >gi|307706054|ref|ZP_07642873.1| ribonuclease HIII [Streptococcus mitis SK321] gi|307618454|gb|EFN97602.1| ribonuclease HIII [Streptococcus mitis SK321] Length = 293 Score = 62.0 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + + P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGIQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +SIIA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|157149738|ref|YP_001449575.1| ribonuclease HIII [Streptococcus gordonii str. Challis substr. CH1] gi|189043678|sp|A8AUW5|RNH3_STRGC RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|157074532|gb|ABV09215.1| ribonuclease HIII [Streptococcus gordonii str. Challis substr. CH1] Length = 296 Score = 62.0 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 77/196 (39%), Gaps = 29/196 (14%) Query: 23 MWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EK 74 + G DEVG G+ G + VVA+ + G+ DSK ++ +K +L EK Sbjct: 80 YQAMIGTDEVGNGSYFGGLAVVASFVTKEQEDFLRKLGVGDSKTLTDQKIRQLAPILKEK 139 Query: 75 ITSSAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRS------ 124 IT A++ +Q I + ++ A + + + + P +ID + Sbjct: 140 ITHQALLLSPKKYNQVIASGYNAVSVKVALHNQAIYLLLEKGIKPDQIVIDAFTSSTNYQ 199 Query: 125 --IPEDLPCQAFAVI---KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 + ++ + A+ K + L++A +SIIA RD + + G+ G Sbjct: 200 RYVKQERNQVSQAIHLEEKAEGKYLAVAVSSIIA---RDLFLENLEILSQELGYQLPSGA 256 Query: 180 PTAKHQQV---IKEKG 192 Q +K G Sbjct: 257 GAKSDQVASQILKAYG 272 >gi|332295295|ref|YP_004437218.1| ribonuclease HII/HIII [Thermodesulfobium narugense DSM 14796] gi|332178398|gb|AEE14087.1| ribonuclease HII/HIII [Thermodesulfobium narugense DSM 14796] Length = 302 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 69/169 (40%), Gaps = 24/169 (14%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSS 78 G DE G+G GP+VVA + + +N+ GI DSK ++ ++ L +I +S Sbjct: 90 FDFYIGSDESGKGDYFGPLVVAGVEMTGDNLRSLESSGIKDSKALNEERIFCLESEIINS 149 Query: 79 AIIS-----ISSASHQYIDKHNIHKATLD--AIYHAVENLQVIPRS-----ALIDGRSIP 126 ++ + + + + A L+ E + ++D S+ Sbjct: 150 KVLYKRITLLPEKYNNMYEFYKSKNANLNDILARLHFETISYFLDEKSSFKVVVDKFSVN 209 Query: 127 EDL--------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 L + F V++ +S L +AAASI+A+ R M+ + Sbjct: 210 SGLEKKFLKYKNVKFFEVVRAESEFLFVAAASILARAEFLRQMKRLSDE 258 >gi|332363155|gb|EGJ40940.1| ribonuclease HIII [Streptococcus sanguinis SK49] Length = 296 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 75/199 (37%), Gaps = 30/199 (15%) Query: 20 EKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKI 75 +N + G DEVG G+ G + VVA+ + + G+ DSK ++ K +L + Sbjct: 78 SQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDSKIRQLAPVL 136 Query: 76 TS----SAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ ++ I + ++ A + + + + P +ID + + Sbjct: 137 KEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKSLNPEKIVIDAFTSQQ 196 Query: 128 D-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + P + K + L++A +SIIA RD + + G+ Sbjct: 197 NYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIA---RDLFLENLENLSQELGYTLP 253 Query: 177 VGYPTAKHQQV---IKEKG 192 G + Q ++ G Sbjct: 254 SGAGSKSDQVASQILQAYG 272 >gi|73916726|gb|AAZ93231.1| RNase HII [Streptococcus pneumoniae] Length = 294 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 77/198 (38%), Gaps = 33/198 (16%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDG---------- 122 A++ S ++ I D++N + A + + + V P +ID Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 123 -----RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + K + L++A +S+IA RD + + G+ Sbjct: 199 LAQETNRFSNPISNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPS 255 Query: 178 GYPTAKHQQV---IKEKG 192 G TA + ++ G Sbjct: 256 GAGTASDKVASQILQAYG 273 >gi|225858257|ref|YP_002739767.1| ribonuclease HIII [Streptococcus pneumoniae 70585] gi|254808014|sp|C1C5E1|RNH3_STRP7 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|225720842|gb|ACO16696.1| ribonuclease hiii [Streptococcus pneumoniae 70585] Length = 293 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREE----LYEKIT 76 P+ G DEVG G+ G + V A + P+ G+ DSK ++ +K + L EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVATFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + LS+A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|327459066|gb|EGF05414.1| ribonuclease HIII [Streptococcus sanguinis SK1057] Length = 296 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 73/193 (37%), Gaps = 29/193 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS---- 77 + G DEVG G+ G + V A + P G+ DSK ++ K +L + Sbjct: 83 LIGTDEVGNGSYFGGLAVVASFVSPGQHDFLRKLGVGDSKTLNDSKIRQLAPVLKEKIAH 142 Query: 78 SAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED----- 128 A++ ++ I + ++ A + + + + P +ID + ++ Sbjct: 143 QALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKGINPEKIVIDAFTSQQNYKKYL 202 Query: 129 ------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 P + K + L++A +SIIA RD + + G+ G + Sbjct: 203 KQEKNHFPNPVSLIEKAEGKFLAVAVSSIIA---RDLFLENLENLSQELGYTLPSGAGSK 259 Query: 183 -KHQ--QVIKEKG 192 H Q+++ G Sbjct: 260 SDHVASQILQAYG 272 >gi|67480158|gb|AAY67993.1| ribonuclease HI large subunit [Oxyuranus scutellatus scutellatus] Length = 211 Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 22/138 (15%) Query: 87 SHQYIDKHNIHKATLD----AIYHAVENLQVIPRSALIDGRSIPEDLP---------CQA 133 S Q K+N++ + D I HA+++ V +D E + Sbjct: 16 SMQRRTKYNLNALSHDTAIGLIQHALDS-GVQLAEVFVDTVGPAEKYQEKLKQQFPELEV 74 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAH--KKYPDYGFDSHVGYPT-AKHQQVIKE 190 K DS+ +++AASI AKV RDR+++ + D D GYP K ++ + + Sbjct: 75 TVRAKADSLFPTVSAASICAKVARDRIVKNWKFLENLEDTEMDYGSGYPNDPKTKEWLAQ 134 Query: 191 -----KGPSCIHRLTFRP 203 G R ++ Sbjct: 135 NLDPIFGYPQFVRFSWST 152 >gi|297748139|gb|ADI50685.1| Ribonuclease HIII [Chlamydia trachomatis D-EC] gi|297749019|gb|ADI51697.1| Ribonuclease HIII [Chlamydia trachomatis D-LC] Length = 302 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 45/216 (20%), Positives = 74/216 (34%), Gaps = 34/216 (15%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-----NDSKKISHKKREELYEK 74 ++++ G+DE G+G GP+ A + + DSK I K L + Sbjct: 84 QQDLRSRIGVDESGKGDFFGPLCTAGVYASSPQAIEALYKTSICDSKLIPDAKILSLAQN 143 Query: 75 ITSSAIISISSASHQYIDKHNIHK---ATLDAIYHA--VENLQVIPR---SALIDGRSIP 126 I S + + + + + +L A HA ++NL P A+ D + Sbjct: 144 IRSLCACKVITLFPEKYNALYANFQNLNSLLAWTHATIIDNLAPHPAGAVFAISDQFASS 203 Query: 127 EDLPCQAFAVIKGD---------SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 E + QA D + +AAASI+A R+ + H Y Sbjct: 204 ERVLLQAVRKKCSDIELIQRHRAEQDVVVAAASILA---REAFLSSIHALESQYQIRLLK 260 Query: 178 GYPTAKHQQV---IKEKG------PSCIHRLTFRPL 204 G Q+ + KG H TF + Sbjct: 261 GASGKVKQRAKEILHNKGQVVLEKVCKTHFKTFNEV 296 >gi|73916772|gb|AAZ93254.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 77/194 (39%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYE----KIT 76 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ KI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKDKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPIKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + LS+A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|15604726|ref|NP_219510.1| ribonuclease HIII [Chlamydia trachomatis D/UW-3/CX] gi|76788720|ref|YP_327806.1| ribonuclease HIII [Chlamydia trachomatis A/HAR-13] gi|237802442|ref|YP_002887636.1| ribonuclease HIII [Chlamydia trachomatis B/Jali20/OT] gi|237804357|ref|YP_002888511.1| ribonuclease HIII [Chlamydia trachomatis B/TZ1A828/OT] gi|255310808|ref|ZP_05353378.1| ribonuclease HIII [Chlamydia trachomatis 6276] gi|255317108|ref|ZP_05358354.1| ribonuclease HIII [Chlamydia trachomatis 6276s] gi|7227923|sp|O84011|RNH3_CHLTR RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|123607238|sp|Q3KN14|RNH3_CHLTA RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|3328396|gb|AAC67598.1| Ribonuclease HII [Chlamydia trachomatis D/UW-3/CX] gi|76167250|gb|AAX50258.1| ribonuclease HIII [Chlamydia trachomatis A/HAR-13] gi|231272657|emb|CAX09560.1| ribonuclease HIII [Chlamydia trachomatis B/TZ1A828/OT] gi|231273676|emb|CAX10454.1| ribonuclease HIII [Chlamydia trachomatis B/Jali20/OT] gi|289525054|emb|CBJ14523.1| ribonuclease HIII [Chlamydia trachomatis Sweden2] gi|296434592|gb|ADH16770.1| ribonuclease HIII [Chlamydia trachomatis E/150] gi|296435523|gb|ADH17697.1| ribonuclease HIII [Chlamydia trachomatis G/9768] gi|296436447|gb|ADH18617.1| ribonuclease HIII [Chlamydia trachomatis G/11222] gi|296437383|gb|ADH19544.1| ribonuclease HIII [Chlamydia trachomatis G/11074] gi|297139882|gb|ADH96640.1| ribonuclease HIII [Chlamydia trachomatis G/9301] Length = 300 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 45/216 (20%), Positives = 74/216 (34%), Gaps = 34/216 (15%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI-----NDSKKISHKKREELYEK 74 ++++ G+DE G+G GP+ A + + DSK I K L + Sbjct: 82 QQDLRSRIGVDESGKGDFFGPLCTAGVYASSPQAIEALYKTSICDSKLIPDAKILSLAQN 141 Query: 75 ITSSAIISISSASHQYIDKHNIHK---ATLDAIYHA--VENLQVIPR---SALIDGRSIP 126 I S + + + + + +L A HA ++NL P A+ D + Sbjct: 142 IRSLCACKVITLFPEKYNALYANFQNLNSLLAWTHATIIDNLAPHPAGAVFAISDQFASS 201 Query: 127 EDLPCQAFAVIKGD---------SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 E + QA D + +AAASI+A R+ + H Y Sbjct: 202 ERVLLQAVRKKCSDIELIQRHRAEQDVVVAAASILA---REAFLSSIHALESQYQIRLLK 258 Query: 178 GYPTAKHQQV---IKEKG------PSCIHRLTFRPL 204 G Q+ + KG H TF + Sbjct: 259 GASGKVKQRAKEILHNKGQVVLEKVCKTHFKTFNEV 294 >gi|168485538|ref|ZP_02710046.1| ribonuclease hiii [Streptococcus pneumoniae CDC1087-00] gi|73916736|gb|AAZ93236.1| RNase HII [Streptococcus pneumoniae] gi|73916800|gb|AAZ93268.1| RNase HII [Streptococcus pneumoniae] gi|73916812|gb|AAZ93274.1| RNase HII [Streptococcus pneumoniae] gi|183571185|gb|EDT91713.1| ribonuclease hiii [Streptococcus pneumoniae CDC1087-00] Length = 290 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N I A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSIKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|332364401|gb|EGJ42175.1| ribonuclease HIII [Streptococcus sanguinis SK355] Length = 296 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 75/199 (37%), Gaps = 30/199 (15%) Query: 20 EKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKI 75 +N + G DEVG G+ G + VVA+ + + G+ DSK ++ K +L + Sbjct: 78 SQNFALI-GTDEVGNGSYFGGLAVVASFVTPNQHDFLRKLGVGDSKTLNDSKIRQLAPVL 136 Query: 76 TS----SAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ ++ I + ++ A + + + + P +ID + + Sbjct: 137 KEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKGLNPEKIVIDAFTSQQ 196 Query: 128 D-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + P + K + L++A +SIIA RD + + G+ Sbjct: 197 NYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIA---RDLFLENLENLSQELGYTLP 253 Query: 177 VGYPTAKHQQV---IKEKG 192 G + Q ++ G Sbjct: 254 SGAGSKSDQVASQILQAYG 272 >gi|307710539|ref|ZP_07646975.1| ribonuclease HIII [Streptococcus mitis SK564] gi|307618692|gb|EFN97832.1| ribonuclease HIII [Streptococcus mitis SK564] Length = 293 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGAQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +SIIA RD + + G+ G T Sbjct: 199 LAQEVNRFSNPISLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|76798409|ref|ZP_00780650.1| ribonuclease HIII [Streptococcus agalactiae 18RS21] gi|76586241|gb|EAO62758.1| ribonuclease HIII [Streptococcus agalactiae 18RS21] Length = 286 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 79/213 (37%), Gaps = 37/213 (17%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREE 70 E+ E P+ G DEVG G+ G + VVA+ + ++ G+ DSK ++ +K ++ Sbjct: 61 ESCSSESQDIPIIGTDEVGNGSYFGGLAVVASFVTPKDHAYLKKLGVGDSKTLTDQKIKQ 120 Query: 71 LYEKITS----SAIISISSASHQYIDKHNIHK------ATLDAIYHAVENLQVIPRSALI 120 + + A++ +Q + +N H A + + P +I Sbjct: 121 IAPLLEKAIPHKALLLSPQKYNQVVSPNNKHNAVSVKVALHNQAIFLLLQDGFEPEKIVI 180 Query: 121 DGRSIPED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 D + ++ K ++ L++A +SIIA+ + Sbjct: 181 DAFTSSKNYQNYLKNEKNQFKQTITLEEKAENKYLAVAVSSIIARNLFLENLNKLSDDV- 239 Query: 170 DYGFDSHVGYPTAKHQ------QVIKEKGPSCI 196 Y S G HQ Q++K G S + Sbjct: 240 GYKLPSGAG-----HQSDKVASQLLKAYGISSL 267 >gi|22537861|ref|NP_688712.1| ribonuclease HIII [Streptococcus agalactiae 2603V/R] gi|76787270|ref|YP_330330.1| ribonuclease HIII [Streptococcus agalactiae A909] gi|77405976|ref|ZP_00783055.1| ribonuclease HIII [Streptococcus agalactiae H36B] gi|77409445|ref|ZP_00786139.1| ribonuclease HIII [Streptococcus agalactiae COH1] gi|73917857|sp|Q8DXX3|RNH3_STRA5 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|123601321|sp|Q3JZH3|RNH3_STRA1 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|22534757|gb|AAN00585.1|AE014270_3 ribonuclease HIII [Streptococcus agalactiae 2603V/R] gi|76562327|gb|ABA44911.1| ribonuclease HIII [Streptococcus agalactiae A909] gi|77171937|gb|EAO75112.1| ribonuclease HIII [Streptococcus agalactiae COH1] gi|77175428|gb|EAO78218.1| ribonuclease HIII [Streptococcus agalactiae H36B] Length = 297 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 79/213 (37%), Gaps = 37/213 (17%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREE 70 E+ E P+ G DEVG G+ G + VVA+ + ++ G+ DSK ++ +K ++ Sbjct: 72 ESCSSESQDIPIIGTDEVGNGSYFGGLAVVASFVTPKDHAYLKKLGVGDSKTLTDQKIKQ 131 Query: 71 LYEKITS----SAIISISSASHQYIDKHNIHK------ATLDAIYHAVENLQVIPRSALI 120 + + A++ +Q + +N H A + + P +I Sbjct: 132 IAPLLEKAIPHKALLLSPQKYNQVVSPNNKHNAVSVKVALHNQAIFLLLQDGFEPEKIVI 191 Query: 121 DGRSIPED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 D + ++ K ++ L++A +SIIA+ + Sbjct: 192 DAFTSSKNYQNYLKNEKNQFKQTITLEEKAENKYLAVAVSSIIARNLFLENLNKLSDDV- 250 Query: 170 DYGFDSHVGYPTAKHQ------QVIKEKGPSCI 196 Y S G HQ Q++K G S + Sbjct: 251 GYKLPSGAG-----HQSDKVASQLLKAYGISSL 278 >gi|306834303|ref|ZP_07467420.1| ribonuclease HIII [Streptococcus bovis ATCC 700338] gi|304423476|gb|EFM26625.1| ribonuclease HIII [Streptococcus bovis ATCC 700338] Length = 300 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 69/179 (38%), Gaps = 26/179 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEK----IT 76 P+ G DEVG G+ G + VVA+ + ++ G++DSK ++ K ++ I Sbjct: 84 PLIGSDEVGNGSYFGGLAVVASFVTPDDHALLKKLGVDDSKNLTDSKIRQIAPILENNIK 143 Query: 77 SSAIISISSASHQYIDKHNIHK------ATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 A++ +Q + K +H A + + + V P +ID + ++ Sbjct: 144 HKALLLSPQKYNQVVGKGKMHNAVSVKVALHNQAIYLLLQDGVKPEKIVIDAFTSRQNYQ 203 Query: 131 -----------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 K + L++A +SIIA+ + ++ Y S G Sbjct: 204 KYLKNEANQFANPLTLEEKAEGKYLAVAVSSIIARNLFLENLDKLSQEV-QYKLPSGAG 261 >gi|325979098|ref|YP_004288814.1| ribonuclease HIII [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325179026|emb|CBZ49070.1| Ribonuclease HIII [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 300 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 26/180 (14%) Query: 24 WPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEK----I 75 P+ G DEVG G+ G + VVA+ + ++ G++DSK ++ K ++ I Sbjct: 83 MPLIGSDEVGNGSYFGGLAVVASFVTPDDHALLKKLGVDDSKNLTDSKIRQIAPVLENNI 142 Query: 76 TSSAIISISSASHQYIDKHNIHK------ATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 A++ +Q + K +H A + + + V P +ID + ++ Sbjct: 143 KHKALLLSPQKYNQVVGKGKMHNAVSVKVALHNQAIYLLLQDGVKPEKIVIDAFTSRQNY 202 Query: 130 P-----------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 K + L++A +SIIA+ + ++ Y S G Sbjct: 203 QKYLKNEANQFANPLTLEEKAEGKYLAVAVSSIIARNLFLENLDKLSQEV-QYKLPSGAG 261 >gi|306832179|ref|ZP_07465333.1| ribonuclease HIII [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425618|gb|EFM28736.1| ribonuclease HIII [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 300 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 26/180 (14%) Query: 24 WPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEK----I 75 P+ G DEVG G+ G + VVA+ + ++ G++DSK ++ K ++ I Sbjct: 83 MPLIGSDEVGNGSYFGGLAVVASFVTPDDHALLKKLGVDDSKNLTDSKIRQIAPVLENNI 142 Query: 76 TSSAIISISSASHQYIDKHNIHK------ATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 A++ +Q + K +H A + + + V P +ID + ++ Sbjct: 143 KHKALLLSPQKYNQVVGKGKMHNAVSVKVALHNQAIYLLLQDGVKPEKIVIDAFTSRQNY 202 Query: 130 P-----------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 K + L++A +SIIA+ + ++ Y S G Sbjct: 203 QKYLKNEANQFANPLTLEEKAEGKYLAVAVSSIIARNLFLENLDKLSQEV-QYKLPSGAG 261 >gi|288906134|ref|YP_003431356.1| ribonuclease HIII [Streptococcus gallolyticus UCN34] gi|288732860|emb|CBI14439.1| ribonuclease HIII [Streptococcus gallolyticus UCN34] Length = 300 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 26/180 (14%) Query: 24 WPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEK----I 75 P+ G DEVG G+ G + VVA+ + ++ G++DSK ++ K ++ I Sbjct: 83 MPLIGSDEVGNGSYFGGLAVVASFVTPDDHALLKKLGVDDSKNLTDSKIRQIAPVLENNI 142 Query: 76 TSSAIISISSASHQYIDKHNIHK------ATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 A++ +Q + K +H A + + + V P +ID + ++ Sbjct: 143 KHKALLLSPQKYNQVVGKGKMHNAVSVKVALHNQAIYLLLQDGVKPEKIVIDAFTSRQNY 202 Query: 130 P-----------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 K + L++A +SIIA+ + ++ Y S G Sbjct: 203 QKYLKNEANQFANPLTLEEKAEGKYLAVAVSSIIARNLFLENLDKLSQEV-QYKLPSGAG 261 >gi|73916722|gb|AAZ93229.1| RNase HII [Streptococcus pneumoniae] Length = 290 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|73916710|gb|AAZ93223.1| RNase HII [Streptococcus pneumoniae] gi|73916742|gb|AAZ93239.1| RNase HII [Streptococcus pneumoniae] gi|73916744|gb|AAZ93240.1| RNase HII [Streptococcus pneumoniae] gi|73916746|gb|AAZ93241.1| RNase HII [Streptococcus pneumoniae] gi|73916748|gb|AAZ93242.1| RNase HII [Streptococcus pneumoniae] Length = 290 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|289168568|ref|YP_003446837.1| predicted ribonuclease HIII [Streptococcus mitis B6] gi|288908135|emb|CBJ22976.1| predicted ribonuclease HIII [Streptococcus mitis B6] Length = 293 Score = 60.5 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + + P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGIQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +SIIA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|322386130|ref|ZP_08059764.1| ribonuclease HIII [Streptococcus cristatus ATCC 51100] gi|321269822|gb|EFX52748.1| ribonuclease HIII [Streptococcus cristatus ATCC 51100] Length = 294 Score = 60.5 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 77/204 (37%), Gaps = 29/204 (14%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREE 70 E + + G DEVG G+ G + VVA+ + + G+ DSK ++ K + Sbjct: 70 EEASKTSQKISLIGTDEVGNGSYFGGLAVVASFVSPEQHAFLRKLGVGDSKALTDLKIRQ 129 Query: 71 LYE----KITSSAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 L +I A++ ++ + + ++ A + + + ++ P +ID Sbjct: 130 LAPILKKEIQHQALLLSPEKYNEVVASGYNAVSVKVALHNQAIYLLLQKRLRPEKIVIDA 189 Query: 123 RSIPED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 + ++ P + K + L++A +SIIA RD + + Sbjct: 190 FTSQQNYDKYLQNEKNHFPNPVSLIEKAEGKFLAVAVSSIIA---RDLFLENLENLSQEL 246 Query: 172 GFDSHVGYPTAKHQQV---IKEKG 192 G+ G + Q ++ G Sbjct: 247 GYTLPSGAGSKSDQVASQILQAYG 270 >gi|332522787|ref|ZP_08399039.1| ribonuclease HIII [Streptococcus porcinus str. Jelinkova 176] gi|332314051|gb|EGJ27036.1| ribonuclease HIII [Streptococcus porcinus str. Jelinkova 176] Length = 319 Score = 60.5 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 27/198 (13%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + V A ++P + P G+NDSK ++ K ++ EKI Sbjct: 102 PLIGSDEVGNGSYFGGLAVVASYVEPTDHPYLKELGVNDSKTLNDHKIRQIAPLLEEKIR 161 Query: 77 SSAIISISSASHQYI------DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED-- 128 A++ +Q + + ++ A + + V P +ID + ++ Sbjct: 162 HKALLLSPQKYNQMVGPDKAYNAVSVKVALHNQAIFLLLQSGVKPSKIVIDAFTSKQNYQ 221 Query: 129 ---------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P + K + L++A +SIIA+ + K+ Y S G Sbjct: 222 KHLKKEKNQFPNPLSLIEKAEGQFLAVAVSSIIARNLFLENLDHLSKEL-GYQLPSGAGK 280 Query: 180 PTA-KHQQVIKEKGPSCI 196 + Q+IK G S + Sbjct: 281 ASDLVASQLIKAYGMSAL 298 >gi|149012155|ref|ZP_01833264.1| ribonuclease HIII [Streptococcus pneumoniae SP19-BS75] gi|147763757|gb|EDK70691.1| ribonuclease HIII [Streptococcus pneumoniae SP19-BS75] Length = 293 Score = 60.5 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 A++ S ++ I D++N + A + + + V P +ID + ++ Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|254443118|ref|ZP_05056594.1| ribonuclease HIII [Verrucomicrobiae bacterium DG1235] gi|198257426|gb|EDY81734.1| ribonuclease HIII [Verrucomicrobiae bacterium DG1235] Length = 334 Score = 60.5 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 10/91 (10%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS 82 AG+DE G+G L GPVV A +I D +I GI DSK I+ + +L + I + +S Sbjct: 109 AGMDESGKGDLFGPVVTACVIADKVHIDQWVKDGIRDSKTITDSRILKLDKIIRGTKGVS 168 Query: 83 ISSA------SHQYIDKHNIHKATLDAIYHA 107 + + ++ + K + L A HA Sbjct: 169 VETCFCGMPKYNELMGKPRANLNLLLAWQHA 199 >gi|313889744|ref|ZP_07823386.1| ribonuclease HIII [Streptococcus pseudoporcinus SPIN 20026] gi|313121789|gb|EFR44886.1| ribonuclease HIII [Streptococcus pseudoporcinus SPIN 20026] Length = 305 Score = 60.5 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 76/198 (38%), Gaps = 27/198 (13%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + V A ++P++ P G+NDSK ++ K ++ + Sbjct: 88 PLIGSDEVGNGSYFGGLAVVASYVEPSDHPYLKELGVNDSKTLNDHKIRQIAPLLEKKIR 147 Query: 81 ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSIPED-- 128 S + ++ ++ A + + V P +ID + ++ Sbjct: 148 HKALLLSPKKYNQLVGPSKAYNAVSVKVALHNQAIFLLLQSGVKPSKIVIDAFTSKQNYQ 207 Query: 129 ---------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P + K + L++A +SIIA+ + K+ Y S G Sbjct: 208 KHLKKEKNQFPNPLSFIEKAEGQFLAVAVSSIIARNLFLENLDHLSKEL-GYQLPSGAGK 266 Query: 180 PTA-KHQQVIKEKGPSCI 196 + Q+IK G S + Sbjct: 267 ASDLVASQLIKAYGMSAL 284 >gi|255710295|gb|ACU30967.1| ribonuclease HI [Ochlerotatus triseriatus] Length = 235 Score = 60.5 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 68/173 (39%), Gaps = 31/173 (17%) Query: 62 KISHKKREELYEKITSSAI------ISISSASHQYID-------KHNIHKATLDAIYHAV 108 +++ +KR+ +++++ ++ S I K ++++ ++D+ + Sbjct: 1 QLTEEKRDVIFDEMNQKDYATESIGWAVEVISPNDICMSMLRRTKRSLNEVSMDSAIGLI 60 Query: 109 E---NLQVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVT 156 + V +D PE + + K DS ++AASI AKV+ Sbjct: 61 NKAIDAGVNIAEVYVDTVGPPEKYQAKLKQLFPKFKITVAKKADSTYPIVSAASICAKVS 120 Query: 157 RDRLMRIAHKKYP-DYGFDSHVGY---PTAKHQQVIKE--KGPSCIHRLTFRP 203 RD +++ + + G + GY PT K+ E G + R ++ Sbjct: 121 RDHALKVWTFREGLEEGINFGSGYPGDPTTKNFLGTYELVFGYPRLVRFSWST 173 >gi|284931417|gb|ADC31355.1| Ribonuclease HIII [Mycoplasma gallisepticum str. F] Length = 331 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 32/169 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + G DEVG G GP+V ++ + I G+ DSK ++ K + ++ Sbjct: 110 LIGCDEVGVGEYLGPIVTCCALVSDDQIDQINRLGVKDSKLLTDDKIVNIANELRKFIKF 169 Query: 82 SISSASH--------QYIDKHNIHKATLDAIYHA----------VENLQVIPRSALIDGR 123 I Q D+ A +++A + N+ V+ + + + Sbjct: 170 QIFCFDPKKGALEFNQMYDQLKNINALKAYMHNAGLILFKQKYGINNMIVLDQFV--NEK 227 Query: 124 SIPEDL-PCQAFAVI-------KGDSISLSIAAASIIAKVTRDRLMRIA 164 E L + +I K +S LS+A ASI+A+ L + Sbjct: 228 KYYEHLNNYKVTPIIKIDVMEEKAESKYLSVAVASILARAYYLELCKKL 276 >gi|56421232|ref|YP_148550.1| ribonuclease HIII [Geobacillus kaustophilus HTA426] gi|81346706|sp|Q5KWF4|RNH3_GEOKA RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|56381074|dbj|BAD76982.1| ribonuclease HIII (RNase HIII) [Geobacillus kaustophilus HTA426] Length = 311 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 14/109 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS 82 G DEVG G GP+VVAA +D ++I G+ DSK+++ + ++ I +A + Sbjct: 96 IGSDEVGTGDYFGPIVVAAAYVDRSHIAKIAALGVKDSKQLTDEAIHKIAPAIMETAPYA 155 Query: 83 ISSASHQYIDKHNIH-----KATLDAIYHAVENL-----QVIPRSALID 121 ++ + ++ K + L + P + +ID Sbjct: 156 VTVLDNAEYNRWQRSGMPQTKMKALLHNRTLAKLVDAIAPIEPEAIIID 204 >gi|289803931|ref|ZP_06534560.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 37 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 19/31 (61%) Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 H GYPTA H + + + G + HR +F P++ Sbjct: 1 HKGYPTAFHLEKLAQYGATAHHRRSFAPVKR 31 >gi|25011806|ref|NP_736201.1| ribonuclease HIII [Streptococcus agalactiae NEM316] gi|77413664|ref|ZP_00789848.1| ribonuclease HIII [Streptococcus agalactiae 515] gi|73917856|sp|Q8E3J2|RNH3_STRA3 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|24413347|emb|CAD47426.1| Unknown [Streptococcus agalactiae NEM316] gi|77160264|gb|EAO71391.1| ribonuclease HIII [Streptococcus agalactiae 515] Length = 297 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 79/213 (37%), Gaps = 37/213 (17%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREE 70 E+ E P+ G DEVG G+ G + VVA+ + ++ G+ DSK ++ +K ++ Sbjct: 72 ESCSSETQDIPIIGTDEVGNGSYFGGLAVVASFVTPKDHAYLKKLGVGDSKTLTDQKIKQ 131 Query: 71 LYEKITS----SAIISISSASHQYIDKHNIHK------ATLDAIYHAVENLQVIPRSALI 120 + + A++ +Q + +N H A + + P +I Sbjct: 132 IAPLLEKAIPHKALLLSPQKYNQVVGPNNKHNAVSVKVALHNQAIFLLLQDGFEPEKIVI 191 Query: 121 DGRSIPED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 D + ++ K ++ L++A +SIIA+ + Sbjct: 192 DAFTSSKNYQNYLKNEKNQFKQTITLEEKAENKYLAVAVSSIIARNLFLENLNKLSDDV- 250 Query: 170 DYGFDSHVGYPTAKHQ------QVIKEKGPSCI 196 Y S G HQ Q++K G S + Sbjct: 251 GYKLPSGAG-----HQSDKVASQLLKAYGISSL 278 >gi|329766418|ref|ZP_08257962.1| Ribonuclease HII [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137017|gb|EGG41309.1| Ribonuclease HII [Candidatus Nitrosoarchaeum limnia SFB1] Length = 116 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 21/113 (18%) Query: 111 LQVIPRSALIDGRSIPEDLPCQ----------AFAVIKGDSISLSIAAASIIAKVTRDRL 160 L++ P ++ +D + + + + DS + ++AASIIAKV RDR Sbjct: 6 LKLNPDTSYVDSCDVNPNRFGKEISKLSKNKKIRSYHHADSRFIVVSAASIIAKVVRDRE 65 Query: 161 MRIAHKKYPDYGFDSHVGYPTA-KHQQVIK-----EKGPSCIHRLTFRPLRNL 207 + K + D GYP+ K +K R +++P + + Sbjct: 66 IMKLRKNH-----DLGSGYPSDSKTIDFVKLYYKTNHILPVFVRKSWKPTQKI 113 >gi|213857937|ref|ZP_03384908.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 44 Score = 59.7 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 20/33 (60%), Positives = 23/33 (69%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI 57 VAG+DEVGRG L G VV AA+ILDP G+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGL 43 >gi|326203823|ref|ZP_08193685.1| ribonuclease HIII [Clostridium papyrosolvens DSM 2782] gi|325985921|gb|EGD46755.1| ribonuclease HIII [Clostridium papyrosolvens DSM 2782] Length = 302 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 22/150 (14%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELYEKITS---S 78 G DE G+G GP+V A +++ + G+ DSKK+S + + + ++I Sbjct: 90 IGSDESGKGDFFGPLVTVAFLIENDKQVIELEKIGVRDSKKVSDNRIKIISQQIQEIGNF 149 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYH--AVENL--QVIPRSALID---GRSIPEDLPC 131 I I+ + + + +L A H A+EN+ + +ID G + Sbjct: 150 DKILITPIKYNELYDKIKNLNSLLAWSHSKAIENIVKSNEVKMIVIDKFAGMDFISNFVL 209 Query: 132 QAFAVIKGD-------SISLSIAAASIIAK 154 + + K + +++AAASI+A+ Sbjct: 210 KKSSNNKAELVLIQNAEREIAVAAASILAR 239 >gi|323128007|gb|ADX25304.1| ribonuclease HIII [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 299 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 73/198 (36%), Gaps = 27/198 (13%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSK ++ + + + Sbjct: 84 PMIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKTLTDQTIRRIAPILEEKIS 143 Query: 81 ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI----- 125 S + ++ ++ A + + + + P +ID + Sbjct: 144 HKSLLLSPKKYNEMVGKDKPYNAVSVKVALHNQAIYLLLQEGINPEKIVIDAFTSQSNYQ 203 Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P K +S+ L++A +SIIA+ + ++ Y S G Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESLYLAVAVSSIIARNLFLENLDTLGQEL-GYRLPSGAGQ 262 Query: 180 PT-AKHQQVIKEKGPSCI 196 + Q++ G S + Sbjct: 263 ASDKVASQLLAAYGMSSL 280 >gi|251783283|ref|YP_002997588.1| ribonuclease HIII [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391915|dbj|BAH82374.1| ribonuclease HIII [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 299 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 73/198 (36%), Gaps = 27/198 (13%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSK ++ + + + Sbjct: 84 PMIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKTLTDQTIRRIAPILEEKIS 143 Query: 81 ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI----- 125 S + ++ ++ A + + + + P +ID + Sbjct: 144 HKSLLLSPKKYNEMVGKDKPYNAVSVKVALHNQAIYLLLQEGINPEKIVIDAFTSQSNYE 203 Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P K +S+ L++A +SIIA+ + ++ Y S G Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESLYLAVAVSSIIARNLFLENLDTLGQEL-GYRLPSGAGQ 262 Query: 180 PT-AKHQQVIKEKGPSCI 196 + Q++ G S + Sbjct: 263 ASDKVASQLLAAYGMSSL 280 >gi|307708231|ref|ZP_07644698.1| ribonuclease hiii [Streptococcus mitis NCTC 12261] gi|307615677|gb|EFN94883.1| ribonuclease hiii [Streptococcus mitis NCTC 12261] Length = 293 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 29/195 (14%) Query: 24 WPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELY----EKI 75 +P+ G DEVG G+ G + VVA+ + + G+ DSK ++ K ++ EKI Sbjct: 78 FPLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDLKIRQIAPILKEKI 137 Query: 76 TSSAIISISSASHQYI-DKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLP- 130 A++ S ++ I D++N + A+ L + P +ID + ++ Sbjct: 138 QHQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLKKGLQPEKIVIDAFTSAKNYDK 197 Query: 131 ----------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 K + L++A +SIIA RD + + G+ G Sbjct: 198 YLAQEANRFSNPISLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAG 254 Query: 181 TAKHQQV---IKEKG 192 TA + ++ G Sbjct: 255 TASDKVASQILQAYG 269 >gi|322377071|ref|ZP_08051563.1| ribonuclease HIII [Streptococcus sp. M334] gi|321281784|gb|EFX58792.1| ribonuclease HIII [Streptococcus sp. M334] Length = 293 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 77/194 (39%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYE----KIT 76 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K +L KI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQLAPILKDKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 ++ S ++ I D++N + A + + + + P +ID + ++ Sbjct: 139 HQELLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGIQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +SIIA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|187734791|ref|YP_001876903.1| ribonuclease HIII [Akkermansia muciniphila ATCC BAA-835] gi|187424843|gb|ACD04122.1| ribonuclease HIII [Akkermansia muciniphila ATCC BAA-835] Length = 294 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 70/176 (39%), Gaps = 25/176 (14%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREE 70 E M + P GIDE G+G GP+VVA + +D G+ DSK + R Sbjct: 74 EEMEKGCGFVPHFGIDESGKGDYFGPLVVAGVYVDGGIGAALRKLGVCDSKLVGSSSRIR 133 Query: 71 -LYEKITSSA-----IISISSASHQYIDKHNIHKATLDAIYHA--VENLQV-IPR--SAL 119 L E I ++SI + + + A HA +E L +P AL Sbjct: 134 CLAEGIRRVPGIRFHLVSIGPERYNQLYPEFGNLNRFLAWGHATVIEGLAAKVPDCPMAL 193 Query: 120 IDGRSIPEDLP---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 D + P L + ++ +S +++AAASI+A+ M A + Sbjct: 194 SDQFANPFVLKRALAAKKVCVRLEQRVRAES-DIAVAAASILARERFVNWMDAAGE 248 >gi|297529143|ref|YP_003670418.1| ribonuclease HIII [Geobacillus sp. C56-T3] gi|297252395|gb|ADI25841.1| ribonuclease HIII [Geobacillus sp. C56-T3] Length = 311 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 14/109 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS 82 G DEVG G GP+VVAA +D ++I G+ DSK+++ + + + I +A + Sbjct: 96 IGSDEVGTGDYFGPIVVAAAYVDRSHIAKIAALGVKDSKQLNDEAIKRIAPAIMETAPYA 155 Query: 83 ISSASHQYIDKHNIH-----KATLDAIYHAVENL-----QVIPRSALID 121 ++ + ++ K + L + P + +ID Sbjct: 156 VTVLDNAEYNRWQRSGMPQTKMKALLHNRTLAKLVDAIAPIEPEAIIID 204 >gi|319745672|gb|EFV97971.1| ribonuclease HIII [Streptococcus agalactiae ATCC 13813] Length = 292 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 41/213 (19%), Positives = 78/213 (36%), Gaps = 37/213 (17%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREE 70 E+ E P+ G DEVG G+ G + VVA+ + ++ + DSK ++ +K ++ Sbjct: 67 ESCSSESQDIPIIGTDEVGNGSYFGGLAVVASFVTPKDHAYLKKLEVGDSKTLTDQKIKQ 126 Query: 71 LYEKITS----SAIISISSASHQYIDKHNIHK------ATLDAIYHAVENLQVIPRSALI 120 + + A++ +Q + +N H A + + P +I Sbjct: 127 IAPLLEKAIPHKALLLSPQKYNQVVGPNNKHNAVSVKVALHNQAIFLLLQDGFEPEKIVI 186 Query: 121 DGRSIPED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 D + ++ K ++ L++A +SIIA+ + Sbjct: 187 DAFTSSKNYQNYLKNEKNQFKQTITLEEKAENKYLAVAVSSIIARNLFLENLNKLSDDV- 245 Query: 170 DYGFDSHVGYPTAKHQ------QVIKEKGPSCI 196 Y S G HQ Q++K G S + Sbjct: 246 GYKLPSGAG-----HQSDKVASQLLKAYGISSL 273 >gi|309790298|ref|ZP_07684866.1| ribonuclease HIII [Oscillochloris trichoides DG6] gi|308227686|gb|EFO81346.1| ribonuclease HIII [Oscillochloris trichoides DG6] Length = 312 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 25/165 (15%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT----SS 78 G+DE G+G GP+VVAA+ +D G+ DSK + +L ++I ++ Sbjct: 98 VGMDESGKGDWYGPLVVAAVYVDAQTEATLQQAGVRDSKLVDQATLPKLVQRIEQLVPAT 157 Query: 79 AIISISSAS------HQYIDKHNIHKATLDAIY-----HAVENLQVIPRSA-----LIDG 122 A A + + NI A L A A +V+ +DG Sbjct: 158 ARYVTVLAPSDYNRRYAESNNVNILLAELYAETATRVCQATGCKRVVCDQFAQRTERLDG 217 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 LP + ++ S+++AAASI+A ++ + Sbjct: 218 TFTQAGLPRPTQ-MHHAEAQSIAVAAASILATARFAAELQRLGAE 261 >gi|294660432|ref|NP_853189.2| ribonuclease HIII [Mycoplasma gallisepticum str. R(low)] gi|284812092|gb|AAP56757.2| Ribonuclease HIII [Mycoplasma gallisepticum str. R(low)] gi|284930671|gb|ADC30610.1| Ribonuclease HIII [Mycoplasma gallisepticum str. R(high)] Length = 331 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 32/169 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + G DEVG G GP+V ++ + I G+ DSK ++ K + ++ Sbjct: 110 LIGCDEVGVGEYLGPIVTCCALVSDDQIDQINRLGVKDSKLLTDDKIVNIANELRKLIKF 169 Query: 82 SISSASH--------QYIDKHNIHKATLDAIYHA----------VENLQVIPRSALIDGR 123 I Q D+ A +++A + N+ V+ + + + Sbjct: 170 QIFCFDPKKGALEFNQMYDQLKNINALKAYMHNAGLILFKQKYGINNIIVLDQFV--NEK 227 Query: 124 SIPEDL-PCQAFAVI-------KGDSISLSIAAASIIAKVTRDRLMRIA 164 E L + +I K +S LS+A ASI+A+ L + Sbjct: 228 KYYEHLNNYKVTPMIKIDVMEEKAESKYLSVAVASILARAYYLELCKKL 276 >gi|77412143|ref|ZP_00788466.1| ribonuclease HIII [Streptococcus agalactiae CJB111] gi|77161803|gb|EAO72791.1| ribonuclease HIII [Streptococcus agalactiae CJB111] Length = 297 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 44/213 (20%), Positives = 80/213 (37%), Gaps = 37/213 (17%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREE 70 E+ E P+ G DEVG G+ G + VVA+ + ++ G+ DSK ++ +K ++ Sbjct: 72 ESCSSESQDIPIIGTDEVGNGSYFGGLAVVASFVTPKDHAYLKKLGVGDSKTLTDQKIKQ 131 Query: 71 ----LYEKITSSAIISISSASHQYIDKHNIHK------ATLDAIYHAVENLQVIPRSALI 120 L + I A++ +Q + +N H A + + P +I Sbjct: 132 TAPLLEKAIPHKALLLSPQKYNQVVGPNNKHNAVSVKVALHNQAIFLLLQDGFEPEKIVI 191 Query: 121 DGRSIPED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 D + ++ K ++ L++A +SIIA+ + Sbjct: 192 DAFTSSKNYQNYLKNEKNQFKQTITLEEKAENKYLAVAVSSIIARNLFLENLNKLSDDV- 250 Query: 170 DYGFDSHVGYPTAKHQ------QVIKEKGPSCI 196 Y S G HQ Q++K G S + Sbjct: 251 GYKLPSGAG-----HQSDKVASQLLKAYGISSL 278 >gi|218905781|ref|YP_002453615.1| ribonuclease HIII [Bacillus cereus AH820] gi|218538277|gb|ACK90675.1| ribonuclease HIII [Bacillus cereus AH820] Length = 177 Score = 58.5 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 12/103 (11%) Query: 4 NSIPERPHFELEAMVREKNMWP--------VAGIDEVGRGALAGPVVVAAIILDPNNIP- 54 ++P+ P ++ V P + G DEVG G GP+ V A+ +D IP Sbjct: 67 QTVPQTPKIAVKKSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPL 126 Query: 55 ---FGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKH 94 G+ DSK ++ ++ + +++ S ++ ++ Sbjct: 127 LKELGVKDSKNLNDEQITAIAKQLLHVVPYSSLVLHNEKYNEL 169 >gi|322373722|ref|ZP_08048258.1| ribonuclease HIII [Streptococcus sp. C150] gi|321278764|gb|EFX55833.1| ribonuclease HIII [Streptococcus sp. C150] Length = 296 Score = 58.2 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 73/200 (36%), Gaps = 32/200 (16%) Query: 21 KNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNIP---FGINDSKKISHKKREELYEKIT 76 +N+ + G DEVG G+ G + VVA+++ ++ G++DSK ++ K +L + Sbjct: 78 QNLALI-GSDEVGNGSYFGGLAVVASLVTPADHALLKSLGVDDSKNLNDSKIRQLAPLLE 136 Query: 77 SSAIISISSASHQYIDK----------HNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 S Q ++ ++ A + + P +ID + Sbjct: 137 EKIPHKALLLSPQKYNEVVGDGKAHNAVSVKVALHNQAIFLLLQAGAKPDKIVIDAFTSE 196 Query: 127 ED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 ++ K + L++A +SIIA R+ + K + G+ Sbjct: 197 KNYQKYLKKERNRFDNPITLEEKAEGNYLAVAVSSIIA---RNLFLENLDKLSQEVGYTL 253 Query: 176 HVGYPTAKHQQV---IKEKG 192 G T Q ++ G Sbjct: 254 PSGAGTKSDQVAAKLLQAYG 273 >gi|330723906|gb|AEC46276.1| Ribonuclease HII [Mycoplasma hyorhinis MCLD] Length = 240 Score = 58.2 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 62/178 (34%), Gaps = 34/178 (19%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI 80 V G DEVG G + V + +++ DSK ++ K E LY ++ Sbjct: 12 YVVGCDEVGVGEYFTNLTVCCALFKESDLESQLLEQTKDSKALTALKLENLYNQLIEKIK 71 Query: 81 ISISSASHQYIDKH-----NIHKATLDAIYHAVENLQ------VIPRSALIDGR------ 123 + + + N H ++ L+ P++ +IDG Sbjct: 72 FQVIVLEMEKYNYLIEQGFNSHVIKTILYLKILKQLKKEHFSTTPPQAIIIDGFVSLETF 131 Query: 124 -----SIPEDLPCQAFA--------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 I + L + + + K D +AASIIAK + M+ KK+ Sbjct: 132 ESYLLQIYQKLNIKHWNLKKYPLTLIKKADEKLKQASAASIIAKYSLTMTMQKREKKW 189 >gi|138896261|ref|YP_001126714.1| ribonuclease HIII [Geobacillus thermodenitrificans NG80-2] gi|196250218|ref|ZP_03148912.1| ribonuclease HIII [Geobacillus sp. G11MC16] gi|134267774|gb|ABO67969.1| Ribonuclease HIII [Geobacillus thermodenitrificans NG80-2] gi|196210402|gb|EDY05167.1| ribonuclease HIII [Geobacillus sp. G11MC16] Length = 313 Score = 58.2 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 16/122 (13%) Query: 16 AMVREKNMWPV--AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 + E+ + + G DEVG G GP+VVAA +D ++ G+ DSK+++ + Sbjct: 85 TALSEQELGSLSAIGSDEVGTGDYFGPIVVAAAYVDRGHLDRIAALGVKDSKQLNDETIT 144 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIH-----KATLDAIYHAVENL-----QVIPRSAL 119 + I + +++ ++ ++ K + L + P + + Sbjct: 145 RIAPTIMETVPYAVTVLTNAEYNRWQQSGMPQTKMKALLHNRTLAKLIDDIAPIEPEAII 204 Query: 120 ID 121 ID Sbjct: 205 ID 206 >gi|319939978|ref|ZP_08014333.1| ribonuclease HIII [Streptococcus anginosus 1_2_62CV] gi|319810989|gb|EFW07308.1| ribonuclease HIII [Streptococcus anginosus 1_2_62CV] Length = 296 Score = 58.2 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 78/205 (38%), Gaps = 29/205 (14%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREE 70 E + P+ G DEVG G+ G + VVA+ + + + DSK ++ +K + Sbjct: 72 EKTKSHRQNCPLIGTDEVGNGSYFGGLAVVASFVTPEQHDFLRKLRVGDSKTLTDQKIRQ 131 Query: 71 ----LYEKITSSAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 L EKI A++ +Q I + ++ A + + + V P +ID Sbjct: 132 IVPLLKEKIQHQALLLSPKKYNQVIAADYNAVSVKVALHNQAIYLLLQTGVQPEKIVIDA 191 Query: 123 RSIPED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 + ++ K + L++A +S+IA RD + + Sbjct: 192 FTSDKNYQKYVKQERNHFSNPLTLEEKAEGKYLAVAVSSMIA---RDLFLENLENLSQEL 248 Query: 172 GFDSHVGYPTAKHQ---QVIKEKGP 193 G++ G + Q+++ G Sbjct: 249 GYELPSGAGEKSDKIASQLLQAYGI 273 >gi|282890959|ref|ZP_06299473.1| hypothetical protein pah_c032o041 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499174|gb|EFB41479.1| hypothetical protein pah_c032o041 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 323 Score = 58.2 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 17/128 (13%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDS 60 + PE+ H E ++ GIDE G+G GP+ +A + + +I G+ DS Sbjct: 103 TYPEQTHTTQENLLGR------IGIDESGKGDFFGPLCIAGVFAEGQDILRLKALGVRDS 156 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKH---NIHKATLDAIYHA--VENL--QV 113 K I+ K ++ KI S I + ++ ++ L A HA +ENL + Sbjct: 157 KTITDKDILKISAKIRESFTYHIVRINPLKYNELYGKFLNLNRLLAWGHATTIENLVEKT 216 Query: 114 IPRSALID 121 + +ID Sbjct: 217 QCQDVVID 224 >gi|312868515|ref|ZP_07728715.1| ribonuclease HIII [Streptococcus parasanguinis F0405] gi|311096260|gb|EFQ54504.1| ribonuclease HIII [Streptococcus parasanguinis F0405] Length = 299 Score = 58.2 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 72/192 (37%), Gaps = 29/192 (15%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK----ITSS 78 G DEVG G+ G + V A + P+ G+ DSK + +K ++L I Sbjct: 87 IGTDEVGNGSYFGGLTVVASFVTPDQHDWLKKLGVGDSKTLDDRKIQQLAPLLEENIQHQ 146 Query: 79 AIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A++ ++ I + ++ A + + + N V +ID + ++ Sbjct: 147 ALLLSPKKYNEVIASGYNAVSVKVALHNQAIYLLLNKGVQAERIVIDAFTTAKNYQKYVK 206 Query: 135 AVI-----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 A K + L++A +SIIA+ + + K+ GF+ G Sbjct: 207 AEKNQVSQAIELEEKAEGKYLAVAVSSIIARNLFLQNLEDLGKEL---GFNLPSGAGAKS 263 Query: 184 HQQV---IKEKG 192 Q ++ G Sbjct: 264 DQVAAKLLQTYG 275 >gi|296875781|ref|ZP_06899843.1| ribonuclease H [Streptococcus parasanguinis ATCC 15912] gi|296433152|gb|EFH18937.1| ribonuclease H [Streptococcus parasanguinis ATCC 15912] Length = 299 Score = 58.2 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 73/192 (38%), Gaps = 29/192 (15%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK----ITSS 78 G DEVG G+ G + V A + P+ G+ DSK + +K ++L I Sbjct: 87 IGTDEVGNGSYFGGLTVVASFVTPDQHDWLKKLGVGDSKTLDDRKIQQLAPLLEENIQHQ 146 Query: 79 AIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A++ ++ I + ++ A + + + N +V +ID + ++ Sbjct: 147 ALLLSPKKYNEVIASGYNAVSVKVALHNQAIYLLLNKRVQAERIVIDAFTTAKNYQKYVK 206 Query: 135 AVI-----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 A K + L++A +SIIA+ + + K+ GF+ G Sbjct: 207 AEKNQVSQAIELEEKAEGKYLAVAVSSIIARNLFLQNLEDLGKEL---GFNLPSGAGAKS 263 Query: 184 HQQV---IKEKG 192 Q ++ G Sbjct: 264 DQVAAKLLQTYG 275 >gi|322390269|ref|ZP_08063798.1| ribonuclease HIII [Streptococcus parasanguinis ATCC 903] gi|321143000|gb|EFX38449.1| ribonuclease HIII [Streptococcus parasanguinis ATCC 903] Length = 299 Score = 57.8 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 72/192 (37%), Gaps = 29/192 (15%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK----ITSS 78 G DEVG G+ G + V A + P+ G+ DSK + +K ++L I Sbjct: 87 IGTDEVGNGSYFGGLTVVASFVTPDQHDWLKKLGVGDSKTLDDRKIQQLAPLLEENIQHQ 146 Query: 79 AIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A++ ++ I + ++ A + + + N + +ID + ++ Sbjct: 147 ALLLSPKKYNEVIASGYNAVSVKVALHNQAIYLLLNKGIQAERIVIDAFTTAKNYQKYVK 206 Query: 135 AVI-----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 A K + L++A +SIIA+ + + K+ GF+ G Sbjct: 207 AEKNQVTQAIDLEEKAEGKYLAVAVSSIIARNLFLQNLEDLGKEL---GFNLPSGAGAKS 263 Query: 184 HQQV---IKEKG 192 Q ++ G Sbjct: 264 DQVAAKLLQTYG 275 >gi|193216613|ref|YP_001999855.1| ribonuclease HIII [Mycoplasma arthritidis 158L3-1] gi|193001936|gb|ACF07151.1| ribonuclease HIII [Mycoplasma arthritidis 158L3-1] Length = 236 Score = 57.8 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 75/192 (39%), Gaps = 35/192 (18%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS 78 + G+DE G G PV+ + + N+ G+ DSK + K EL K+ + Sbjct: 8 YDLLIGVDETGVGDYFTPVISVSCFIPKTNLELVKELGVKDSKLLKENKIIELASKLKTL 67 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVEN------LQVIPR--SALIDG----RSIP 126 + S +K K + I + + L+V+ + L+D R + Sbjct: 68 VKWKSLTLSQAGYNKLISAKINNNEIKTLIHSKTINNLLKVLDQKVDVLVDQYTISRQVY 127 Query: 127 EDLPCQAFAV---------------IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 E+ + ++ K +S SL++A+ASIIA R L+ + Y Sbjct: 128 ENHLIKLQSIKWLDFQKPNATIYLTTKAESKSLAVASASIIA---RSILLEKIKAQREQY 184 Query: 172 GFDSHVGYPTAK 183 F+ +G + K Sbjct: 185 NFNFSLG-ASKK 195 >gi|47213807|emb|CAF92580.1| unnamed protein product [Tetraodon nigroviridis] Length = 157 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Query: 138 KGDSISLSIAAASIIAKVTRDRLMR--IAHKKYPDYGFDSHVGYPT-AKHQQVIKEK--- 191 K DS+ ++AASI AKV RD ++ ++ + D GYP K + + Sbjct: 77 KADSLFPIVSAASICAKVARDHAVKHWRFAEELGEADTDYGSGYPNDPKTKAWLLRYLDP 136 Query: 192 --GPSCIHRLTFRPLRNL 207 G R ++ + L Sbjct: 137 VFGYPQFVRFSWSTAQTL 154 >gi|238490075|ref|XP_002376275.1| ribonuclease HI large subunit [Aspergillus flavus NRRL3357] gi|220698663|gb|EED55003.1| ribonuclease HI large subunit [Aspergillus flavus NRRL3357] Length = 273 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 26/136 (19%) Query: 98 KATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI---------KGDSISLSIAA 148 AT++ I VE +V R ID P + + K DS+ ++A Sbjct: 88 DATVELIREIVEGRKVDIREVYIDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSA 147 Query: 149 ASIIAKVTRDRLMRIAHK-KYPDYGFDS----------HVGYPTAKHQQVIKEKGPSCIH 197 AS+ AKVTRD + + H+ FD GYP+ + I Sbjct: 148 ASVAAKVTRDVALELCHEDIVKAQQFDDPSQATSTESWGSGYPSDSKCVGWLRRNMDPIF 207 Query: 198 ------RLTFRPLRNL 207 R ++ + + Sbjct: 208 GWGNECRFSWGTSKEM 223 >gi|15606830|ref|NP_214210.1| hypothetical protein aq_1768 [Aquifex aeolicus VF5] gi|7227918|sp|O67644|RNH3_AQUAE RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|2984074|gb|AAC07614.1| hypothetical protein aq_1768 [Aquifex aeolicus VF5] Length = 257 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 15/162 (9%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G DE G+G + G +V+ + + N D+K++S K+ E LY + Sbjct: 75 GCDESGKGDIFGSLVLCCVCIPEENYLKVSSLNPRDTKRLSDKRVERLYLALKPLVKAYC 134 Query: 84 SSASHQYIDKH-----NIHKATLDAIYHAVENLQVIP--RSALIDGRSIPEDLPCQAFAV 136 + +K N++K +E ++ ++D Sbjct: 135 YEIKPEEYNKLYRKFRNLNKMMTHFYKLLIERVKEECGVSEVVVDKYQPSNPFGEDVIFE 194 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + + +L++A ASI A R + ++ + + G G Sbjct: 195 TEAE-RNLAVAVASIFA---RYKFLQSLKEVERELGIKIPKG 232 >gi|307704254|ref|ZP_07641173.1| ribonuclease HIII [Streptococcus mitis SK597] gi|307622165|gb|EFO01183.1| ribonuclease HIII [Streptococcus mitis SK597] Length = 293 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 78/194 (40%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELY----EKIT 76 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYI-DKHN---IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-- 130 ++ S ++ I D++N + A + + + + P +ID + ++ Sbjct: 139 HQTLLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGIQPEKIVIDAFTSAKNYDKY 198 Query: 131 ---------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQEANHFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILQAYG 269 >gi|304373232|ref|YP_003856441.1| Ribonuclease HII [Mycoplasma hyorhinis HUB-1] gi|304309423|gb|ADM21903.1| Ribonuclease HII [Mycoplasma hyorhinis HUB-1] Length = 240 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 62/178 (34%), Gaps = 34/178 (19%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI 80 V G DEVG G + V + +++ DSK ++ K E LY ++ Sbjct: 12 YVVGCDEVGVGEYFTNLTVCCTLFKESDLESQLLEQTKDSKALTALKLENLYNQLIEKIK 71 Query: 81 ISISSASHQYIDKH-----NIHKATLDAIYHAVENLQ------VIPRSALIDGR------ 123 + + + N H ++ L+ P++ +IDG Sbjct: 72 FQVIVLEMEKYNYLIEQGFNSHVIKTILYLKILKQLKKEHFSTTPPQAIIIDGFVSLETF 131 Query: 124 -----SIPEDLPCQAFA--------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 I + L + + + K D +AASIIAK + M+ KK+ Sbjct: 132 ESYLLQIYQKLNIKHWNLKKYPLTLIKKADEKLKQASAASIIAKYSLTMTMQKREKKW 189 >gi|319946237|ref|ZP_08020477.1| ribonuclease HIII [Streptococcus australis ATCC 700641] gi|319747619|gb|EFV99872.1| ribonuclease HIII [Streptococcus australis ATCC 700641] Length = 296 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 80/206 (38%), Gaps = 30/206 (14%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKRE 69 ++ + ++ P+ G DEVG G+ G + VVA+++ + G+ DSK + +K Sbjct: 72 IDQALAGQDF-PLIGTDEVGNGSYFGGLAVVASLVSPEQHARLKSLGVGDSKTLDDRKIR 130 Query: 70 ELYEKITS----SAIISISSASHQYI----DKHNIHKATLDAIYHAVENLQVIPRSALID 121 L + A++ +Q I + ++ A + + + ++D Sbjct: 131 ALAPILKKEIPHQALLLTPKKYNQVIASGYNAVSVKVALHNQAIFLLLQQGAKAQKIVVD 190 Query: 122 GRSIPEDLPCQAFAVI-----------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 + ++ A K + L++A +SIIA RD ++ + + Sbjct: 191 AFTTKKNYDRYVQAEANQVPQVVTLEEKAEGKYLAVAVSSIIA---RDLFLQNLEELSQE 247 Query: 171 YGFDSHVGYPTAKHQ---QVIKEKGP 193 G+ G T + Q+++ G Sbjct: 248 LGYTLPSGAGTPSDKVAAQLLQAYGI 273 >gi|288817370|ref|YP_003431717.1| ribonuclease HIII [Hydrogenobacter thermophilus TK-6] gi|288786769|dbj|BAI68516.1| ribonuclease HIII [Hydrogenobacter thermophilus TK-6] gi|308750977|gb|ADO44460.1| ribonuclease HIII [Hydrogenobacter thermophilus TK-6] Length = 259 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 58/138 (42%), Gaps = 11/138 (7%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISH----KKREELYEKITSS 78 G DE G+G + GP+V+ +I+ P++ D K + KK E L + + Sbjct: 77 IGCDESGKGDVFGPLVLCCVIIPPSHYKRVLSLAPKDCKLLKDEVLLKKVEALSPLVEAK 136 Query: 79 AIISISSASHQ-YIDKHNIHKATLDAIYHAVENLQVIPR-SALIDGRSIPEDLPCQAFAV 136 ++ ++ Y + N+++ A +E+++ ID S Sbjct: 137 CLVYEPEQLNELYSEVRNLNRIMDRAYRTLIEDVRKHYHVEITIDAYSSQSPFGKGVVFK 196 Query: 137 IKGDSISLSIAAASIIAK 154 KG+ ++++ AS+ A+ Sbjct: 197 KKGE-RDVAVSVASMFAR 213 >gi|326407889|gb|ADZ64960.1| ribonuclease HIII [Lactococcus lactis subsp. lactis CV56] Length = 292 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 73/171 (42%), Gaps = 24/171 (14%) Query: 21 KNMWPVAGIDEVGRGALAGP-VVVAAIILDPN---NIPFGINDSKKISHKKREELYE--- 73 + + G DEVG G+ G +V A+ +++ N G+ DSKK++ +K ++ Sbjct: 73 QKQTNLIGTDEVGNGSYFGGLMVTASFVIEENLNFLKEIGVADSKKLTDEKICQIAPKLI 132 Query: 74 -KITSSAIISISSASHQYI----DKHNIHKATLDAIYHAVE-NLQVIPRSALIDGRSIPE 127 +I A++ + ++ I + +I A + + +E L P + +ID + Sbjct: 133 DRIPHVALVVEPAKYNEVIASGYNAVSIKVALHNQAIYLLEKQLGHKPENIVIDAFTTEA 192 Query: 128 DLPC-----------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + + + K + L++A +SII++ ++ K+ Sbjct: 193 NYKKYVNKEQNHPLTKVTLLTKAEDQFLAVAVSSIISRYLFLENLKKLSKE 243 >gi|222153672|ref|YP_002562849.1| ribonuclease HIII [Streptococcus uberis 0140J] gi|254808016|sp|B9DVL0|RNH3_STRU0 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|222114485|emb|CAR43350.1| ribonuclease HIII [Streptococcus uberis 0140J] Length = 301 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 79/205 (38%), Gaps = 47/205 (22%) Query: 24 WPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITS-- 77 +P+ G DEVG G+ G + VVA+ + ++ G++DSK ++ K ++ + Sbjct: 82 YPLIGSDEVGNGSYFGGLAVVASFVKPEDHDYLKQLGVDDSKSLTDHKIRQIAPLLEEKI 141 Query: 78 ------------SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR-- 123 + ++ A + ++ A + + +VIP +ID Sbjct: 142 PHKSLLLTPQKYNTLVGKGKAYNAV----SVKVALHNQAIFLLLQQKVIPERIIIDAFTS 197 Query: 124 --------SIPEDLPCQAFAVI-KGDSISLSIAAASIIAKVTR----DRLMRIAHKKYPD 170 ++ +A +I K +S L++A +SIIA+ D L + P Sbjct: 198 HSNYLKHLKTEKNQFTEAITLIEKAESQFLAVAVSSIIARNLFLENLDNLSNELGYQLP- 256 Query: 171 YGFDSHVGYPTAKHQ---QVIKEKG 192 G + Q Q+++ G Sbjct: 257 ------SGAGSKSDQVASQLLEAYG 275 >gi|116513211|ref|YP_812118.1| ribonuclease HIII [Lactococcus lactis subsp. cremoris SK11] gi|123125205|sp|Q02VL7|RNH3_LACLS RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|116108865|gb|ABJ74005.1| Ribonuclease HIII [Lactococcus lactis subsp. cremoris SK11] Length = 292 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 24/171 (14%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELY---- 72 K + G DEVG G+ G ++V A + N++ F G+ DSKK++ +K ++ Sbjct: 73 KKQTNLIGTDEVGNGSYFGGLMVTASFVSDNHLKFLKEMGVADSKKLTDEKICQIAPKLI 132 Query: 73 EKITSSAIISISSASHQYI----DKHNIHKATLDAIYHAVE-NLQVIPRSALIDGRSIPE 127 E+I A++ ++ I + +I A + + +E L P S +ID + Sbjct: 133 EEIPHVALVVEPEKYNEVIASGYNAVSIKVALHNQAIYLLEKQLGSQPESIVIDAFTTEA 192 Query: 128 DLPCQAFA-----------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + A + K + L++A +SII++ ++ K+ Sbjct: 193 NYKKYVSAEKNHPLTNVTLLTKAEDQFLAVAVSSIISRYKFLENLKKLSKE 243 >gi|67613296|ref|XP_667291.1| ribonuclease H1 large subunit [Cryptosporidium hominis TU502] gi|54658412|gb|EAL37062.1| ribonuclease H1 large subunit [Cryptosporidium hominis] Length = 81 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 21/41 (51%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF 55 E + R ++ + GIDE GRG + GP+V A + N Sbjct: 7 ENIHRFEHKEVILGIDEAGRGPVLGPMVYACLFYPKENENL 47 >gi|15674239|ref|NP_268414.1| ribonuclease HIII [Lactococcus lactis subsp. lactis Il1403] gi|281492933|ref|YP_003354913.1| ribonuclease HIII [Lactococcus lactis subsp. lactis KF147] gi|20978735|sp|Q9CDG3|RNH3_LACLA RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|12725328|gb|AAK06355.1|AE006455_1 ribonuclease HII [Lactococcus lactis subsp. lactis Il1403] gi|281376585|gb|ADA66071.1| Ribonuclease HIII [Lactococcus lactis subsp. lactis KF147] Length = 292 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 73/171 (42%), Gaps = 24/171 (14%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYE--- 73 + + G DEVG G+ G ++V A + N+ F G+ DSKK++ +K ++ Sbjct: 73 QKQTNLIGTDEVGNGSYFGGLMVTASFVSEENLNFLKEIGVADSKKLTDEKICQIAPKLI 132 Query: 74 -KITSSAIISISSASHQYI----DKHNIHKATLDAIYHAVE-NLQVIPRSALIDGRSIPE 127 +I A++ + ++ I + +I A + + +E L P + +ID + Sbjct: 133 DRIPHVALVVEPAKYNEVIASGYNAVSIKVALHNQAIYLLEKQLGHKPENIVIDAFTTEA 192 Query: 128 DLPC-----------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + + + K + L++A +SII++ ++ K+ Sbjct: 193 NYKKYVNKEQNHPLTKVTLLTKAEDQFLAVAVSSIISRYLFLENLKKLSKE 243 >gi|125625302|ref|YP_001033785.1| ribonuclease HIII [Lactococcus lactis subsp. cremoris MG1363] gi|166226671|sp|A2RP65|RNH3_LACLM RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|124494110|emb|CAL99111.1| RnhA protein [Lactococcus lactis subsp. cremoris MG1363] gi|300072114|gb|ADJ61514.1| ribonuclease HIII [Lactococcus lactis subsp. cremoris NZ9000] Length = 292 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 24/171 (14%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELY---- 72 K + G DEVG G+ G ++V A + N++ F G+ DSKK++ +K ++ Sbjct: 73 KKQTNLIGTDEVGNGSYFGGLMVTASFVSDNHLKFLKEMGVADSKKLTDEKICQIAPKLI 132 Query: 73 EKITSSAIISISSASHQYI----DKHNIHKATLDAIYHAVE-NLQVIPRSALIDGRSIPE 127 E+I A++ ++ I + +I A + + +E L P S +ID + Sbjct: 133 EEIPHVALVVEPEKYNEVIASGYNAVSIKVALHNQAIYLLEKQLGSQPESIVIDAFTTEA 192 Query: 128 DLPCQAFA-----------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + A + K + L++A +SII++ ++ K+ Sbjct: 193 NYKKYVSAEKNHPLTNITLLTKAEDQFLAVAVSSIISRYKFLENLKKLSKE 243 >gi|145481239|ref|XP_001426642.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124393718|emb|CAK59244.1| unnamed protein product [Paramecium tetraurelia] Length = 281 Score = 55.1 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 79/211 (37%), Gaps = 35/211 (16%) Query: 2 FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS- 60 F N+ + LE + + N + GI E GRG L GP+++A N + + Sbjct: 4 FNNNSSDELPQNLEDL--KANSEWILGIFEAGRGPLIGPIIIAGCFWPITNHNYIVKQCS 61 Query: 61 ----KKISHKKRE--ELYEKITSSAI-ISISSASHQYIDKH-------NIHKATLDAIYH 106 K+ + E E+ K+ A+ S Q + ++++ +L+ Sbjct: 62 LSLNKQFYQNQVESSEIISKLKGKALQFETIEISAQKLSTKILAYTPSDVNEISLNYTLQ 121 Query: 107 AVENL---QVIPRSALIDGRSIPEDLP---CQAFAVIKGDSI-----SLSIAAASIIAKV 155 ++N+ I+ E+L + + D +I AA I++ Sbjct: 122 LIKNILSKGYKIIECYINPIGFKENLNEVLKKGLGLGNNDLKFIVGMHQTIIAAQIVSLQ 181 Query: 156 TRD-RLMRIAHKKYP--DYGFDSHVGYPTAK 183 R+ RL++I YP G GYP+ Sbjct: 182 ERNTRLLQIQQDIYPSGQMG----SGYPSDA 208 >gi|225869207|ref|YP_002745155.1| ribonuclease HIII [Streptococcus equi subsp. zooepidemicus] gi|225702483|emb|CAX00396.1| ribonuclease HIII [Streptococcus equi subsp. zooepidemicus] Length = 319 Score = 54.7 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 68/194 (35%), Gaps = 27/194 (13%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNIP---FGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + + G++DSK ++ K ++ + Sbjct: 102 PLIGSDEVGNGSYFGGIAVVASFVRPEEHALLRQLGVDDSKNLNDKSIAQIAPVLKKHIQ 161 Query: 81 ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI----- 125 S + ++ ++ A + + N P +ID + Sbjct: 162 HRALLLSPKKYNEMVGKGKPYNAVSVKVALHNQAIFLLLNDGARPEKIVIDAFTSQANYD 221 Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 K + L++A +SIIA+ + + Y S G Sbjct: 222 KYLQQEKNHFRNPLTFEEKAEGKYLAVAVSSIIARQLFLDNLDKLSQDL-GYRLPSGAGR 280 Query: 180 PTAK-HQQVIKEKG 192 P+ + Q++ G Sbjct: 281 PSDQIASQILAAYG 294 >gi|225869839|ref|YP_002745786.1| ribonuclease HIII [Streptococcus equi subsp. equi 4047] gi|225699243|emb|CAW92545.1| ribonuclease HIII [Streptococcus equi subsp. equi 4047] Length = 319 Score = 54.7 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 68/194 (35%), Gaps = 27/194 (13%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNIP---FGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + + G++DSK ++ K ++ + Sbjct: 102 PLIGSDEVGNGSYFGGIAVVASFVQPEEHALLRQLGVDDSKNLNDKSIAQIAPVLKKHIQ 161 Query: 81 ISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI----- 125 S + ++ ++ A + + N P +ID + Sbjct: 162 HRALLLSPKKYNEMVGKGKPYNAVSVKVALHNQAIFLLLNDGARPEKIVIDAFTSQANYD 221 Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 K + L++A +SIIA+ + + Y S G Sbjct: 222 KYLQQEKNHFRNPLTFEEKAEGKYLAVAVSSIIARQLFLDNLDKLSQDL-GYRLPSGAGR 280 Query: 180 PTAK-HQQVIKEKG 192 P+ + Q++ G Sbjct: 281 PSDQIASQILAAYG 294 >gi|195977476|ref|YP_002122720.1| ribonuclease HIII [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974181|gb|ACG61707.1| ribonuclease HIII [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 291 Score = 54.3 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 68/195 (34%), Gaps = 27/195 (13%) Query: 24 WPVAGIDEVGRGALAGPV-VVAAIILDPNNIP---FGINDSKKISHKKREELYEKITSSA 79 P+ G DEVG G+ G + VVA+ + ++ G++DSK +S ++ + Sbjct: 73 MPLIGSDEVGNGSYFGGIAVVASFVRPEDHALLRQLGVDDSKNLSDMSIVQIAPVLKKHI 132 Query: 80 IISISSASHQYIDKH----------NIHKATLDAIYHAVENLQVIPRSALIDGRSI---- 125 S + ++ ++ A + + N P +ID + Sbjct: 133 QHRALLLSPKKYNEMVGKGKPYNAVSVKVALHNQAIFLLLNDGARPEKIVIDAFTSQANY 192 Query: 126 -------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 K + L++A +SIIA+ + + Y S G Sbjct: 193 DKYLQQEKNHFRNPLTFEEKAEGKYLAVAVSSIIARQLFLDNLDKLSQDL-GYRLPSGAG 251 Query: 179 YPTAK-HQQVIKEKG 192 P+ + QV+ G Sbjct: 252 RPSDQIASQVLAAYG 266 >gi|171909879|ref|ZP_02925349.1| ribonuclease HIII [Verrucomicrobium spinosum DSM 4136] Length = 305 Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 54/227 (23%), Positives = 86/227 (37%), Gaps = 44/227 (19%) Query: 6 IPERPHFELEAMV---REKNMWPV---------AGIDEVGRGALAGPVVVAAIILDPNN- 52 + E F LE V E V GIDE G+G GP+V+A ++ + Sbjct: 63 VEEFITFTLEPEVLGVAELGYEEVNQPEMFEPHLGIDESGKGDFFGPLVIAGAYVEASMA 122 Query: 53 ---IPFGINDSKKI-SHKKREELYEKITS----SAIISISSASHQYIDKHNIHKATLDAI 104 G+ DSK+I S + E + + + +I I + + + L A Sbjct: 123 RKLRDMGVMDSKRIGSDARIEAIAGDMRAARVVHEVIVIGPEKYNELYTKFGNLNRLLAW 182 Query: 105 YHA--VEN-LQVIPR--SALIDGRSIPEDLP---------CQAFAVIKGDSISLSIAAAS 150 HA +EN L+ +P AL D + P L K +S ++AAAS Sbjct: 183 GHARVIENLLERVPDCPMALSDQFANPRVLQSALLEKGKTIDLQQRTKAES-DPAVAAAS 241 Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV----IKEKGP 193 I A+ R ++ A + G G + +Q I++ G Sbjct: 242 IFAREKFVRWLKEAGDRL---GILLPKG-ASPAVKQAGAELIRKHGA 284 >gi|206895101|ref|YP_002247347.1| ribonuclease hiii (rnase hiii), putative [Coprothermobacter proteolyticus DSM 5265] gi|206737718|gb|ACI16796.1| ribonuclease hiii (rnase hiii), putative [Coprothermobacter proteolyticus DSM 5265] Length = 251 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 2/96 (2%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87 G DE G+G L GP+VVA L+ DSK++S+ E+L + S + I Sbjct: 68 GSDEAGKGDLFGPLVVAGTFLEDQLAMRLAIDSKELSNGAVEKLAQFFKSKCQVVIEQVL 127 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQV-IPRSALIDG 122 + N++ L + E L P G Sbjct: 128 PHEL-TSNMNAVLLKLHLNVYEELDHCRPFYVDDFG 162 >gi|322516016|ref|ZP_08068954.1| ribonuclease HIII [Streptococcus vestibularis ATCC 49124] gi|322125551|gb|EFX96892.1| ribonuclease HIII [Streptococcus vestibularis ATCC 49124] Length = 296 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 32/200 (16%) Query: 21 KNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKIT 76 +N+ + G DEVG G+ G + VVA+++ ++ G++DSK ++ K ++ + Sbjct: 78 QNLALI-GSDEVGNGSYFGGLAVVASLVTPADHAFLKALGVDDSKNLNDTKIRQIAPLLE 136 Query: 77 SSAIISISSASHQYIDKHNIHKATLDA-------IYHAVENL---QVIPRSALIDGRSIP 126 S + ++ +A A+ L P +ID + Sbjct: 137 EKIPHKALLLSPRKYNEVVGDGKAHNAVSVKVALHNQAIFLLLQSGAKPDKIVIDAFTSE 196 Query: 127 ED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 ++ K + L++A +SIIA R+ + K + G+ Sbjct: 197 KNYQKYLKNERNRFDFPITLEEKAEGKYLAVAVSSIIA---RNLFLENLDKLSQEVGYTL 253 Query: 176 HVGYPTAKHQQV---IKEKG 192 G Q ++ G Sbjct: 254 PSGAGAKSDQVATKLLQAYG 273 >gi|321456812|gb|EFX67911.1| LOW QUALITY PROTEIN: hypothetical protein DAPPUDRAFT_260886 [Daphnia pulex] Length = 178 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 11/105 (10%) Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160 AI A+E L + P + L+D + + +K D SI A ++AKVTRDR Sbjct: 72 FLAIRRALEALPLFPSTILLDDTRWLQ-VSVSVIPFVKDDQQIWSIPTAFLLAKVTRDRQ 130 Query: 161 MRIAHKKYPDYGFDSHVG---YPTAKHQQV-------IKEKGPSC 195 M + YP + G T K V ++ GP+ Sbjct: 131 MDKLAEDYPSMTGRTIKGMVPAATKKPYNVATSWSHPLQRHGPTP 175 >gi|312863715|ref|ZP_07723953.1| ribonuclease HIII [Streptococcus vestibularis F0396] gi|311101251|gb|EFQ59456.1| ribonuclease HIII [Streptococcus vestibularis F0396] Length = 289 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 32/200 (16%) Query: 21 KNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKIT 76 +N+ + G DEVG G+ G + VVA+++ ++ G++DSK ++ K ++ + Sbjct: 71 QNLALI-GSDEVGNGSYFGGLAVVASLVTPADHAFLKALGVDDSKNLNDTKIRQIAPLLE 129 Query: 77 SSAIISISSASHQYIDKHNIHKATLDA-------IYHAVENL---QVIPRSALIDGRSIP 126 S + ++ +A A+ L P +ID + Sbjct: 130 EKIPHKALLLSPRKYNEVVGDGKAHNAVSVKVALHNQAIFLLLQSGAKPDKIVIDAFTSE 189 Query: 127 ED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 ++ K + L++A +SIIA R+ + K + G+ Sbjct: 190 KNYQKYLKNERNRFDFPITLEEKAEGKYLAVAVSSIIA---RNLFLENLDKLSQEVGYTL 246 Query: 176 HVGYPTAKHQQV---IKEKG 192 G Q ++ G Sbjct: 247 PSGAGAKSDQVATKLLQAYG 266 >gi|312866306|ref|ZP_07726524.1| ribonuclease HIII [Streptococcus downei F0415] gi|311098000|gb|EFQ56226.1| ribonuclease HIII [Streptococcus downei F0415] Length = 302 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 76/199 (38%), Gaps = 27/199 (13%) Query: 20 EKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNIP---FGINDSKKISHKKREELY--- 72 + + G DEVG G+ G + VVA+++ + G+ DSK ++ +K ++L Sbjct: 81 AQEKLSLIGSDEVGNGSYFGGLAVVASLVRPSDQALLRDLGVADSKVLNDRKIQQLAPIL 140 Query: 73 -EKITSSAIISISSASHQYI------DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 EKI A++ + ++ + + ++ A + + + P +ID + Sbjct: 141 EEKIPHKALLLSPAKYNEVVGPGKAHNAVSVKVALHNQAIYLLLQEVPKPDKIVIDAFTS 200 Query: 126 PEDLP-----------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174 + K + L++A +SIIA+ ++ + Y Sbjct: 201 QNNYKKYLKGERNQFANPLTFEEKAEGKYLAVAVSSIIARNLFLENLKKLGEDL-GYQLP 259 Query: 175 SHVGYPT-AKHQQVIKEKG 192 S G + Q++ G Sbjct: 260 SGAGAKSDKVASQLLAAYG 278 >gi|256078516|ref|XP_002575541.1| ribonuclease hi large subunit [Schistosoma mansoni] gi|238660782|emb|CAZ31774.1| ribonuclease hi large subunit, putative [Schistosoma mansoni] Length = 237 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 26/135 (19%) Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYH--AVENLQVIPR------SALIDGRSIPEDL 129 SA++ + S + + K +L+ I H A++ +Q + +D E Sbjct: 9 SAVVHVISPVYITEKMLDKSKTSLNVISHDSAIQLIQSVLDSGVNLVEVYVDTVGKAEHY 68 Query: 130 PCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY----PDYGFDSH 176 + + K D ++AASI AKVTRDR++++ K+ P+ G Sbjct: 69 ETKLQNLFPQLKIRVESKADDTYPIVSAASIFAKVTRDRVLQMWPKEERGSVPE-GTGLG 127 Query: 177 VGYP----TAKHQQV 187 GYP T + + Sbjct: 128 SGYPGDPVTKSYLRA 142 >gi|290579795|ref|YP_003484187.1| putative ribonuclease [Streptococcus mutans NN2025] gi|254996694|dbj|BAH87295.1| putative ribonuclease [Streptococcus mutans NN2025] Length = 303 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 74/203 (36%), Gaps = 31/203 (15%) Query: 18 VREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYE 73 ++ K + G DEVG G+ G + VVA+ + ++ G++DSK ++ K +++ Sbjct: 79 IKNKQDCSLIGSDEVGNGSYFGGLAVVASFVKQADHAFLKELGVDDSKNLTDVKIKQIAP 138 Query: 74 KITSSAIISISSASHQYIDKHNIHKATLDA-------IYHAVENL---QVIPRSALIDGR 123 + + S Q ++ +A A+ L P +ID Sbjct: 139 LLEAKLPHKALLLSPQKYNEVVGDNKLHNAVSVKVALHNQAIFLLLQEGWQPDKIVIDAF 198 Query: 124 SIPED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 + P++ + + L++A +SIIA R + + G Sbjct: 199 TSPKNYQKYLKNENNRFSNPLTLEERAEGKYLAVAVSSIIA---RKLFLDNLDELSQKVG 255 Query: 173 FDSHVGYPT---AKHQQVIKEKG 192 F+ G Q++K G Sbjct: 256 FNLPSGAGQQSDKIASQILKTYG 278 >gi|24380229|ref|NP_722184.1| ribonuclease HIII [Streptococcus mutans UA159] gi|81450775|sp|Q8DSC8|RNH3_STRMU RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|24378237|gb|AAN59490.1|AE015013_9 putative ribonuclease [Streptococcus mutans UA159] Length = 303 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 74/203 (36%), Gaps = 31/203 (15%) Query: 18 VREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYE 73 ++ K + G DEVG G+ G + VVA+ + ++ G++DSK ++ K +++ Sbjct: 79 IKNKQDCSLIGSDEVGNGSYFGGLAVVASFVKQADHAFLKELGVDDSKNLTDVKIKQIAP 138 Query: 74 KITSSAIISISSASHQYIDKHNIHKATLDA-------IYHAVENL---QVIPRSALIDGR 123 + + S Q ++ +A A+ L P +ID Sbjct: 139 LLEAKLPHKALLLSPQKYNEVVGDNKLHNAVSVKVALHNQAIFLLLQEGWQPDKIVIDAF 198 Query: 124 SIPED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 + P++ + + L++A +SIIA R + + G Sbjct: 199 TSPKNYQKYLKNENNRFSNPLTLEERAEGKYLAVAVSSIIA---RKLFLDNLDELSQKVG 255 Query: 173 FDSHVGYPT---AKHQQVIKEKG 192 F+ G Q++K G Sbjct: 256 FNLPSGAGQQSDKIASQILKTYG 278 >gi|329115714|ref|ZP_08244431.1| ribonuclease HIII [Streptococcus parauberis NCFD 2020] gi|326906119|gb|EGE53033.1| ribonuclease HIII [Streptococcus parauberis NCFD 2020] Length = 299 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 73/185 (39%), Gaps = 27/185 (14%) Query: 19 REKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYE- 73 + +N+ + G DEVG G+ G + VVA+++ ++ G++DSK ++ K + Sbjct: 76 KNQNLALI-GSDEVGNGSYFGGIAVVASLVTPEDHTYLKELGVDDSKNLTDPKIRHIAPL 134 Query: 74 ---KITSSAIISISSASHQYI------DKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 +I A++ +Q + + ++ A + + V +ID + Sbjct: 135 LEARIPHKALLLSPKKYNQMVGPDKPYNAVSVKVALHNQAIFLLLQEGVKADKIVIDAFT 194 Query: 125 IPEDLPCQ------AFAVI-----KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 + F + K +S L++A +SIIA+ ++ + Y Sbjct: 195 SQANYQKHLKREKNQFTNVLTFQEKAESDFLAVAVSSIIARNLFLENLKELGAEL-GYQL 253 Query: 174 DSHVG 178 S G Sbjct: 254 PSGAG 258 >gi|312898932|ref|ZP_07758320.1| ribonuclease HIII [Megasphaera micronuciformis F0359] gi|310620094|gb|EFQ03666.1| ribonuclease HIII [Megasphaera micronuciformis F0359] Length = 318 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 63/168 (37%), Gaps = 27/168 (16%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT----SS 78 G DE G+G + GP+V AA ++ +G+ DSK ++ K+ EL + Sbjct: 109 IGADESGKGDVFGPLVTAACLVTRAEAATLRSWGVTDSKALTDKRILELAGPLKDLLGDR 168 Query: 79 AIISISS-------ASHQYIDKHNIHKATLDAIYHAVEN--LQVIPRSALIDGRSIPEDL 129 A +++ + N++ + ++ L+ ++D E + Sbjct: 169 ACVTVLMPESYNYEYNKMEERGKNLNHLLGNLHGKNIKCLLLKYKCPCIIVDKFGKDEYV 228 Query: 130 ---------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 V KG+ ++A+AS++A+ + ++ Sbjct: 229 LTALGSVAAGKTIIQVTKGE-RDTAVASASVLARAAFIESINELEDRF 275 >gi|240047780|ref|YP_002961168.1| Ribonuclease [Mycoplasma conjunctivae HRC/581] gi|239985352|emb|CAT05365.1| Ribonuclease [Mycoplasma conjunctivae] Length = 239 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 49/164 (29%), Gaps = 34/164 (20%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITSSAI 80 + G DEVG G + V + N+ I DSK ++ KK EE+Y ++ I Sbjct: 13 YIVGCDEVGVGEYFTNLTVCCALFKQEDLDTNLLNSIVDSKLLNEKKIEEIYRQLEEKII 72 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENL-----------QVIPRSALIDGRSIPEDL 129 + S + K I + + + IDG E Sbjct: 73 FEVISLDMDKYNDLINMKFNSHEIKTILYLKLLKKLKSKYFKDIDVKKIYIDGFVTSEKF 132 Query: 130 PCQAFAVI-------------------KGDSISLSIAAASIIAK 154 + K D AASIIAK Sbjct: 133 FSYLEKIYQQLKVRKWDLKKFPILLEKKADEKIKQAGAASIIAK 176 >gi|222151572|ref|YP_002560728.1| hypothetical protein MCCL_1325 [Macrococcus caseolyticus JCSC5402] gi|254808012|sp|B9E764|RNH3_MACCJ RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|222120697|dbj|BAH18032.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 313 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 13/112 (11%) Query: 27 AGIDEVGRGALAGPV-VVAAIILDPNNIP---FGINDSKKISHKKREELYEK---ITSSA 79 G DE G G GP+ VVA+ + N G+ DSK + ++ EL E+ I + Sbjct: 101 IGSDEAGSGDYFGPMTVVASYVSKKNAEILKVLGVMDSKNLKDRQIIELAEQIIPIIPHS 160 Query: 80 IISISSASHQYIDKHNIHKATLDAIYH--AVEN----LQVIPRSALIDGRSI 125 ++ + + + + + + A+ H A++N ++ +ID ++ Sbjct: 161 LLVLDNIKYNERKQMGWSQVKMKAVLHNEAIKNVLNKIEEPVDYIVIDQFAV 212 >gi|312601539|gb|ADQ90794.1| ribonuclease HII [Mycoplasma hyopneumoniae 168] Length = 246 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 57/165 (34%), Gaps = 35/165 (21%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80 V G DEVG G + V + N + I DSK ++ KK +L++ I Sbjct: 12 LVIGCDEVGVGEYFTNLTVCCAVFREKEIKNELLIQIVDSKLLTEKKISDLFQVINIDQK 71 Query: 81 ISISSASHQYI-------DKHNIHKATLDAIYHAVENL-----QVIPRSALIDGR----- 123 I S + D N H+ + + +L IDG Sbjct: 72 IKHKFTSLEMNEYNKLIEDGLNSHQIKSLLYFRVLNDLILNLENEKINKIFIDGFVSEKK 131 Query: 124 ------SIPEDLPC-----QAFAVI---KGDSISLSIAAASIIAK 154 I E L Q F +I K D+ + AASIIAK Sbjct: 132 FKEYFAKIAEFLKIEPWDFQKFPLILEKKADTKIKQVGAASIIAK 176 >gi|144227713|gb|AAZ44677.2| ribonuclease HII [Mycoplasma hyopneumoniae J] gi|144575542|gb|AAZ53956.2| ribonuclease HII [Mycoplasma hyopneumoniae 7448] Length = 248 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 57/165 (34%), Gaps = 35/165 (21%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80 V G DEVG G + V + N + I DSK ++ KK +L++ I Sbjct: 14 LVIGCDEVGVGEYFTNLTVCCAVFREKEIKNELLIQIVDSKLLTEKKISDLFQVINIDQK 73 Query: 81 ISISSASHQYI-------DKHNIHKATLDAIYHAVENL-----QVIPRSALIDGR----- 123 I S + D N H+ + + +L IDG Sbjct: 74 IKHKFTSLEMNEYNKLIEDGLNSHQIKSLLYFRVLNDLILNLENEKINKIFIDGFVSEKK 133 Query: 124 ------SIPEDLPC-----QAFAVI---KGDSISLSIAAASIIAK 154 I E L Q F +I K D+ + AASIIAK Sbjct: 134 FKEYFAKIAEFLKIEPWDFQKFPLILEKKADTKIKQVGAASIIAK 178 >gi|71893942|ref|YP_279388.1| ribonuclease HII [Mycoplasma hyopneumoniae J] gi|72080921|ref|YP_287979.1| ribonuclease HII [Mycoplasma hyopneumoniae 7448] Length = 247 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 57/165 (34%), Gaps = 35/165 (21%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI 80 V G DEVG G + V + N + I DSK ++ KK +L++ I Sbjct: 13 LVIGCDEVGVGEYFTNLTVCCAVFREKEIKNELLIQIVDSKLLTEKKISDLFQVINIDQK 72 Query: 81 ISISSASHQYI-------DKHNIHKATLDAIYHAVENL-----QVIPRSALIDGR----- 123 I S + D N H+ + + +L IDG Sbjct: 73 IKHKFTSLEMNEYNKLIEDGLNSHQIKSLLYFRVLNDLILNLENEKINKIFIDGFVSEKK 132 Query: 124 ------SIPEDLPC-----QAFAVI---KGDSISLSIAAASIIAK 154 I E L Q F +I K D+ + AASIIAK Sbjct: 133 FKEYFAKIAEFLKIEPWDFQKFPLILEKKADTKIKQVGAASIIAK 177 >gi|324513411|gb|ADY45510.1| Ribonuclease H2 subunit A [Ascaris suum] Length = 190 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 23/135 (17%) Query: 89 QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI---------KG 139 +Y H + ++ I A+EN + +D + A K Sbjct: 6 KYSLNELSHTSAINLIKFALEN-GINVTEIYVDTVGPKSTYQAKLQAHFPNISITVTEKA 64 Query: 140 DSISLSIAAASIIAKVTRDRLMRIA-----HKKYPDYGFDSHVGYP-TAKHQQVIKE--- 190 DS+ + AASI AKVTRD ++R P+ G+ GYP ++ + Sbjct: 65 DSLFPVVGAASIAAKVTRDGVLRDWVFVEGDVTVPEGGY--GSGYPGDPNTRKFLVTSID 122 Query: 191 --KGPSCIHRLTFRP 203 G S + R +++ Sbjct: 123 PVFGYSSLVRFSWKT 137 >gi|54020259|ref|YP_116121.1| ribonuclease HII [Mycoplasma hyopneumoniae 232] gi|53987432|gb|AAV27633.1| ribonuclease HII [Mycoplasma hyopneumoniae 232] Length = 248 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 58/165 (35%), Gaps = 35/165 (21%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAI 80 V G DEVG G + V + N + I DSK ++ KK +L++ I + Sbjct: 14 LVIGCDEVGVGEYFTNLTVCCAVFREKEIENELLIQIVDSKLLTEKKISDLFQVINTDQK 73 Query: 81 ISISSASHQYIDK-------HNIHKATLDAIYHAVENL-----QVIPRSALIDGR----- 123 I S + + N H+ + + +L IDG Sbjct: 74 IKHKFTSLEMNEYNKLIENGLNSHQIKSLLYFRVLNDLILNLENEKINKIFIDGFVSEKK 133 Query: 124 ------SIPEDLPC-----QAFAVI---KGDSISLSIAAASIIAK 154 I E L Q F +I K D+ + AASIIAK Sbjct: 134 FKEYFAKIAEFLKIEPWDFQKFPLILEKKADTKIKQVGAASIIAK 178 >gi|228477139|ref|ZP_04061777.1| ribonuclease hiii [Streptococcus salivarius SK126] gi|228251158|gb|EEK10329.1| ribonuclease hiii [Streptococcus salivarius SK126] Length = 289 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 32/200 (16%) Query: 21 KNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKIT 76 +N+ + G DEVG G+ G + VVA+++ ++ G++DSK ++ K ++ + Sbjct: 71 QNLALI-GSDEVGNGSYFGGLAVVASLVTPADHAFLRSLGVDDSKNLNDVKIRQIAPILE 129 Query: 77 SSAIISISSASHQYIDKHNIHKATLDA-------IYHAVENL---QVIPRSALIDGRSIP 126 S + ++ + +A A+ L P +ID + Sbjct: 130 EKIPHKALLLSPRKYNEVVGDGKSHNAVSVKVALHNQAIFLLLQTGAKPDKIVIDAFTSE 189 Query: 127 ED-----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 ++ K + L++A +SIIA R+ + K + G+ Sbjct: 190 KNYQKYLKNERNRFDFPITLEEKAEGKYLAVAVSSIIA---RNLFLENLDKLSQEVGYTL 246 Query: 176 HVGYPTAKHQQV---IKEKG 192 G Q ++ G Sbjct: 247 PSGAGAKSDQVAAKLLQAYG 266 >gi|224476247|ref|YP_002633853.1| ribonuclease HIII [Staphylococcus carnosus subsp. carnosus TM300] gi|222420854|emb|CAL27668.1| putative ribonuclease HIII [Staphylococcus carnosus subsp. carnosus TM300] Length = 314 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI 75 G DE G G GP+ V A + N G++DSKK++ K E+ E+I Sbjct: 97 IGSDEAGSGDYFGPLTVCAAYVSKKNAEILKTLGVDDSKKLTDAKIVEIAEQI 149 >gi|73662964|ref|YP_301745.1| ribonuclease HIII [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642317|sp|Q49WQ7|RNH3_STAS1 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|72495479|dbj|BAE18800.1| putative ribonuclease HIII [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 310 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 9/104 (8%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS---SA 79 G DE G G GP+ V A + N+ G++DSKK++ K EL E++ + + Sbjct: 93 IGSDEAGSGDYFGPLTVCAAYVSHKNVQILKALGVDDSKKLTDTKIVELAEQLVTFIPHS 152 Query: 80 IISISSASHQYIDKHNIHKATLDAIYH--AVENLQVIPRSALID 121 ++ +++ + K + + A+ H A++N+ + +D Sbjct: 153 LLVMNNEKYNEKQKAGWSQVKMKAVLHNEAIKNVTQKIDTTELD 196 >gi|254751206|ref|ZP_05203245.1| ribonuclease HII [Bacillus anthracis str. Vollum] Length = 32 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 18/31 (58%) Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 +GY +H + I+ G HR +F P++++ Sbjct: 1 MGYGKKQHLEAIEAHGVLEEHRKSFAPIKDM 31 >gi|116628458|ref|YP_821077.1| ribonuclease HIII [Streptococcus thermophilus LMD-9] gi|122266947|sp|Q03IU1|RNH3_STRTD RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|116101735|gb|ABJ66881.1| Ribonuclease HIII [Streptococcus thermophilus LMD-9] gi|312279078|gb|ADQ63735.1| Ribonuclease HIII [Streptococcus thermophilus ND03] Length = 296 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 71/200 (35%), Gaps = 32/200 (16%) Query: 21 KNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKIT 76 +N+ + G DEVG G+ G + VVA+++ ++ G++DSK ++ K ++ + Sbjct: 78 QNLALI-GSDEVGNGSYFGGLAVVASLVTPADHAFLKSLGVDDSKNLNDSKIRQIAPLLE 136 Query: 77 SSAIISISSASHQYIDKHNIHKATLDA-------IYHAVENL---QVIPRSALIDGRSIP 126 S + ++ +A A+ L P +ID Sbjct: 137 EKIPHKALLLSPRKYNEVVGDGKAHNAVSVKVALHNQAIFLLLQSGAKPDKIVIDAFISE 196 Query: 127 EDLPC-----------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 ++ K + L++A +SIIA R+ + K + G+ Sbjct: 197 KNYQKYLKNERNHFEFPITLEEKAEGKYLAVAVSSIIA---RNLFLENLDKLSQEVGYTL 253 Query: 176 HVGYPTAKHQQV---IKEKG 192 G Q ++ G Sbjct: 254 PSGAGAKSDQVAAKLLQAYG 273 >gi|55821737|ref|YP_140179.1| ribonuclease HIII [Streptococcus thermophilus LMG 18311] gi|73917860|sp|Q5M2P2|RNH3_STRT2 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|55737722|gb|AAV61364.1| ribonuclease HIII [Streptococcus thermophilus LMG 18311] Length = 296 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 32/200 (16%) Query: 21 KNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKIT 76 +N+ + G DEVG G+ G + VVA+++ ++ G++DSK ++ K ++ + Sbjct: 78 QNLALI-GSDEVGNGSYFGGLAVVASLVTPADHAFLKSLGVDDSKNLNDSKIRQIAPLLE 136 Query: 77 SSAIISISSASHQYIDKHNIHKATLDA-------IYHAVENL---QVIPRSALIDGRSIP 126 S + ++ +A A+ L P +ID Sbjct: 137 EKIPHKALLLSPRKYNEVVGDGKAHNAVSVKVALHNQAIFLLLQSGAKPDKIVIDAFISE 196 Query: 127 EDLPC-----------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 ++ K + L++A +SIIA R+ ++ K + G+ Sbjct: 197 KNYQKYFKNERNHFEFPITLEEKAEGKYLAVAVSSIIA---RNLFLKNLDKLSQEVGYTL 253 Query: 176 HVGYPTAKHQQV---IKEKG 192 G Q ++ G Sbjct: 254 PSGAGAKSDQVAAKLLQAYG 273 >gi|55823657|ref|YP_142098.1| ribonuclease HIII [Streptococcus thermophilus CNRZ1066] gi|73917859|sp|Q5LY37|RNH3_STRT1 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|55739642|gb|AAV63283.1| ribonuclease HIII [Streptococcus thermophilus CNRZ1066] Length = 296 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 32/200 (16%) Query: 21 KNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKIT 76 +N+ + G DEVG G+ G + VVA+++ ++ G++DSK ++ K ++ + Sbjct: 78 QNLALI-GSDEVGNGSYFGGLAVVASLVTPADHAFLKSLGVDDSKNLNDSKIRQIAPLLE 136 Query: 77 SSAIISISSASHQYIDKHNIHKATLDA-------IYHAVENL---QVIPRSALIDGRSIP 126 S + ++ +A A+ L P +ID Sbjct: 137 EKIPHKALLLSPRKYNEVVGDGKAHNAVSVKVALHNQAIFLLLQSGAKPDKIVIDAFISE 196 Query: 127 EDLPC-----------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 ++ K + L++A +SIIA R+ ++ K + G+ Sbjct: 197 KNYQKYLKNERNHFEFPITLEEKAEGKYLAVAVSSIIA---RNLFLKNLDKLSQEVGYTL 253 Query: 176 HVGYPTAKHQQV---IKEKG 192 G Q ++ G Sbjct: 254 PSGAGAKSDQVAAKLLQAYG 273 >gi|255660204|ref|ZP_05405613.1| hypothetical protein MgenG_01327 [Mycoplasma genitalium G37] gi|166078775|gb|ABY79393.1| ribonuclease HIII [synthetic Mycoplasma genitalium JCVI-1.0] Length = 235 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 70/186 (37%), Gaps = 34/186 (18%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 + + G DE G+G G + V+A++++ + + DSKK+S + L + I ++ Sbjct: 9 FYLIGSDESGKGDSFGGICVSAVLIEKKQLINLENLQVTDSKKLSDHTVKLLAKSIQTTV 68 Query: 80 --IISISSASHQYIDKHNIHKATLD--------AIYHAVENLQVIPRSALID-------- 121 +I+ QY D K T +E Q++ ++ I Sbjct: 69 MDHHTITLDPKQYNDLTKSLKNTNLLLTNLHCQLYQKLLEKNQLLRQTVTISIDQFANQE 128 Query: 122 ---------GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 + + +I G++ SL IAAASI+A RD + Sbjct: 129 LFVNYLNKLTNFTDKTVLLPDQFLINGETKSLVIAAASILA---RDSFINQLQLLNQKVN 185 Query: 173 FDSHVG 178 +D G Sbjct: 186 YDLPKG 191 >gi|325117006|emb|CBZ52559.1| Ribonuclease, related [Neospora caninum Liverpool] Length = 297 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 7/87 (8%) Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 ++ SI + + I + K H++ + +LI R++ + A K Sbjct: 32 SLWSIHAIRPEEISAKMLRK-----KKHSLNEISHETAISLIL-RTVQSGVNVAEVAE-K 84 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAH 165 DS+ ++AASI+AKV+RDR++ Sbjct: 85 ADSLYPVVSAASILAKVSRDRMLVQWK 111 >gi|164655636|ref|XP_001728947.1| hypothetical protein MGL_3941 [Malassezia globosa CBS 7966] gi|159102835|gb|EDP41733.1| hypothetical protein MGL_3941 [Malassezia globosa CBS 7966] Length = 269 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 31/114 (27%) Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA-------HKKYPDYG----- 172 P + K D+ + AASI AKVTRD + +P+ Sbjct: 53 FPRHSHIEWIVARKADATYPIVGAASIAAKVTRDACVDHWMYAEPLQSVHHPEISKSSGK 112 Query: 173 -------------FDSHVGYP-TAKHQQVIKE-----KGPSCIHRLTFRPLRNL 207 + + GYP K + +KE G + + R ++ +++ Sbjct: 113 RKRGNNDDEETDIWATGSGYPGDPKTVRYLKETLDPVFGWARLVRFSWATAKSM 166 >gi|67613277|ref|XP_667290.1| ribonuclease HI large subunit [Cryptosporidium hominis TU502] gi|54658405|gb|EAL37055.1| similar to ribonuclease HI large subunit (RNase HI large subunit) [Cryptosporidium hominis] Length = 144 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 18/97 (18%) Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK--YPDYGFDSHV--- 177 +I + K D++ S++ ASI+AKV RD + + F+ + Sbjct: 1 MNIFPGIDITVKP--KADALFPSVSGASILAKVKRDDFLSNWWTQASVESCDFNGNKISN 58 Query: 178 -----GYP-TAKHQQVIKE-----KGPSCIHRLTFRP 203 GYP K ++ ++ G I R ++ Sbjct: 59 YEQGSGYPGDPKTKEFLRRVFDPVFGFPNIVRFSWST 95 >gi|298244281|ref|ZP_06968087.1| ribonuclease HIII [Ktedonobacter racemifer DSM 44963] gi|297551762|gb|EFH85627.1| ribonuclease HIII [Ktedonobacter racemifer DSM 44963] Length = 311 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 5/63 (7%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEK 74 R + + G DE G+G GP+V+AA+ +D + + G+ DSK+++ E+ + Sbjct: 96 RATGLARI-GCDESGKGDYYGPLVMAALYVDNHTEEQLLALGVRDSKRLTDAVMLEMASE 154 Query: 75 ITS 77 I Sbjct: 155 IER 157 >gi|91201202|emb|CAJ74262.1| unknown protein [Candidatus Kuenenia stuttgartiensis] Length = 319 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 13/27 (48%), Positives = 19/27 (70%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILD 49 M +AGIDE G G + GP+V++ + LD Sbjct: 1 MTIIAGIDEAGYGPVLGPLVISVVALD 27 >gi|237734797|ref|ZP_04565278.1| ribonuclease HIII [Mollicutes bacterium D7] gi|229382125|gb|EEO32216.1| ribonuclease HIII [Coprobacillus sp. D7] Length = 262 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 23/153 (15%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAIIS 82 G DE G G GP+ V A +D + + G+ D K + +K+ + ++I I S Sbjct: 52 IGCDETGSGDFFGPLCVVACYVDERDFDWLVSIGVRDPKDMDNKELVRVAKEIKDRLIYS 111 Query: 83 ISSASHQYID---KHNIHKATLDA--IYHAVEN------LQVIPRSA--LIDGRSIPEDL 129 + + + + K + A + A AV N + + + + ++ L Sbjct: 112 LLILDNSHYNAMAKAGNNLANIKAKLYNQAVTNVMQKVSMPIKNKLVNQFVSPKTYYNYL 171 Query: 130 PCQAFAVI------KGDSISLSIAAASIIAKVT 156 + V KG+ L+I + I++K Sbjct: 172 KSEVIVVKDLTFVQKGEEKYLAIICSMILSKYA 204 >gi|167755828|ref|ZP_02427955.1| hypothetical protein CLORAM_01344 [Clostridium ramosum DSM 1402] gi|167704767|gb|EDS19346.1| hypothetical protein CLORAM_01344 [Clostridium ramosum DSM 1402] Length = 260 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 23/153 (15%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAIIS 82 G DE G G GP+ V A +D + + G+ D K + +K+ + ++I I S Sbjct: 50 IGCDETGSGDFFGPLCVVACYVDERDFDWLVSIGVRDPKDMDNKELVRVAKEIKDRLIYS 109 Query: 83 ISSASHQYID---KHNIHKATLDA--IYHAVEN------LQVIPRSA--LIDGRSIPEDL 129 + + + + K + A + A AV N + + + + ++ L Sbjct: 110 LLILDNSHYNAMAKAGNNLANIKAKLYNQAVTNVMQKVSMPIKNKLVNQFVSPKTYYNYL 169 Query: 130 PCQAFAVI------KGDSISLSIAAASIIAKVT 156 + V KG+ L+I + I++K Sbjct: 170 KSEVIVVKDLTFVQKGEEKYLAIICSMILSKYA 202 >gi|182413914|ref|YP_001818980.1| ribonuclease HIII [Opitutus terrae PB90-1] gi|177841128|gb|ACB75380.1| ribonuclease HIII [Opitutus terrae PB90-1] Length = 334 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 10/91 (10%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIIS 82 AG+DE G+G GPV+ A +I + I G+ DSKKI+ + EL + I + + Sbjct: 107 AGLDESGKGDFFGPVIAATVIAEKPAIEAWRKAGVQDSKKIAETRIIELDKLIRETPGVV 166 Query: 83 I------SSASHQYIDKHNIHKATLDAIYHA 107 + ++ + + + L A HA Sbjct: 167 VRTCYCGMPKYNELMARPGANLNRLLAWQHA 197 >gi|108803638|ref|YP_643575.1| RNase HII [Rubrobacter xylanophilus DSM 9941] gi|108764881|gb|ABG03763.1| RNase HII [Rubrobacter xylanophilus DSM 9941] Length = 311 Score = 47.8 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%) Query: 27 AGIDEVGRGALAGPVVVAAIIL-----DPNNIPFGINDSKKISHKKREELYEKITSS 78 GIDE G+G GP+VVA + L D G+ DSK + ++ L + Sbjct: 92 IGIDEAGKGEYLGPLVVAGVRLSGAGDDLRLRELGVRDSKALGAERVRRLARAVVEE 148 >gi|126647908|ref|XP_001388063.1| hypothetical protein [Cryptosporidium parvum Iowa II] gi|126117151|gb|EAZ51251.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II] Length = 144 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 18/97 (18%) Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK--YPDYGFDSHV--- 177 +I + K D++ S++ ASI+AKV RD + + F+ + Sbjct: 1 MNIFPGINITVKP--KADALFPSVSGASILAKVKRDDFLSNWWTQASVESCDFNGNKISN 58 Query: 178 -----GYP-TAKHQQVIKE-----KGPSCIHRLTFRP 203 GYP K + ++ G I R ++ Sbjct: 59 YEQGSGYPGDPKTKDFLRRVFDPVFGFPNIVRFSWST 95 >gi|164655638|ref|XP_001728948.1| hypothetical protein MGL_3942 [Malassezia globosa CBS 7966] gi|159102836|gb|EDP41734.1| hypothetical protein MGL_3942 [Malassezia globosa CBS 7966] Length = 86 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 9/24 (37%), Positives = 13/24 (54%) Query: 28 GIDEVGRGALAGPVVVAAIILDPN 51 G+DE GRG + GP+V + Sbjct: 43 GVDEAGRGPVLGPLVYGIAYCPMD 66 >gi|321309630|ref|YP_004191959.1| ribonuclease HIII [Mycoplasma haemofelis str. Langford 1] gi|319801474|emb|CBY92120.1| ribonuclease HIII [Mycoplasma haemofelis str. Langford 1] Length = 232 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 61/196 (31%), Gaps = 47/196 (23%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAG-PVVVAAII-------LDPNNIPFGI 57 + P +E E+ G DE G+G G PV+ I L I Sbjct: 1 MSFNPDWEKESY----------GSDESGKGDFFGGPVIAVVYINREIIETLKERGFYELI 50 Query: 58 NDSKKISHKKREELYEKITS-------------------SAII----SISSASHQYIDKH 94 DSK+ E +I A + S H + K Sbjct: 51 KDSKQCKDSWIERAVPEIMEILGDFYEYRVFKPLEYNRAYAEYKNMNVLFSLWHDDLHKK 110 Query: 95 NIHKATLDAIY--HAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASII 152 K + A A +L + L GR L F KG+S LS A AS+I Sbjct: 111 ITAKLGIQAFRVMDAWTDLDKHHKYLLGVGRK---ALEVDDFC-TKGESKYLSCALASLI 166 Query: 153 AKVTRDRLMRIAHKKY 168 A+ R M ++ Sbjct: 167 ARYYYLRQMEEISIEF 182 >gi|328462259|gb|EGF34366.1| ribonuclease HII [Lactobacillus rhamnosus MTCC 5462] Length = 25 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 9/25 (36%), Positives = 12/25 (48%) Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKG 192 YP Y F ++GY T H + G Sbjct: 1 YPGYDFKDNMGYGTKAHLAGLAAHG 25 >gi|300175421|emb|CBK20732.2| unnamed protein product [Blastocystis hominis] Length = 174 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 12/88 (13%) Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG----FDSHVGYPTAKHQQ 186 + K DS+ ++AASI+AK RD ++ + P GYP+ Sbjct: 47 IKFKVAPKADSLYKCVSAASIVAKTHRDAIIEQHPWEEPCMQDRLIGKLGSGYPSDPMTV 106 Query: 187 VIKE------KG-PSCIHRLTFRPLRNL 207 E G P+ I R ++ + Sbjct: 107 QFLESVMDPVFGFPTFI-RFSWSTASRM 133 >gi|323142207|ref|ZP_08077041.1| ribonuclease HIII [Phascolarctobacterium sp. YIT 12067] gi|322413270|gb|EFY04155.1| ribonuclease HIII [Phascolarctobacterium sp. YIT 12067] Length = 324 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 7/86 (8%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI 75 +W AG DE G+G G +VVAA ++D G+ D K ++ KK EL I Sbjct: 110 SNGLW--AGSDESGKGDFFGSLVVAATVVDNTTAAKLQAAGVKDCKLLTDKKILELENVI 167 Query: 76 TSSAI-ISISSASHQYIDKHNIHKAT 100 ++ + S+ + + A Sbjct: 168 KATVVDYSVLELKPKIYNLRYEQVAA 193 >gi|224110154|ref|XP_002315431.1| predicted protein [Populus trichocarpa] gi|222864471|gb|EEF01602.1| predicted protein [Populus trichocarpa] Length = 305 Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 55/162 (33%), Gaps = 50/162 (30%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK-KREEL-----------YEK 74 GIDE GR D+ + +R L +E Sbjct: 1 MGIDEAGRVP-----------------DLWCTDACTVLAHMRRLSLPSALQRKGRSDFEN 43 Query: 75 ITSSAIISIS---------SASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDG 122 + ++ I + SA +K N+++ + D+ V N+ V+ +D Sbjct: 44 LKANESIGWAVDVNDPRELSAKMLKKNKINLNEISHDSASGLVNRVLNMGVLLTEVCVDT 103 Query: 123 RSIPEDLPCQ---AFAVIK------GDSISLSIAAASIIAKV 155 PE + +F +K S+ ++ ASI+AKV Sbjct: 104 VGDPEKYRIKLSESFPFVKFVVAKKAGSLYPVVSGASIVAKV 145 >gi|169350173|ref|ZP_02867111.1| hypothetical protein CLOSPI_00917 [Clostridium spiroforme DSM 1552] gi|169292956|gb|EDS75089.1| hypothetical protein CLOSPI_00917 [Clostridium spiroforme DSM 1552] Length = 259 Score = 41.6 bits (97), Expect = 0.062, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 61/160 (38%), Gaps = 25/160 (15%) Query: 22 NMWPV--AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI 75 N + G DE G GP+ V A +D +I I D K++ + + +I Sbjct: 41 NYQKISHIGCDETGSADFFGPLCVVACYVDERDIDWLVSLNIRDPKEMDVHELVRIAREI 100 Query: 76 TSSAIISISSASHQYID---KHNIHKATLDA--IYHAVEN----LQVIPRSALIDGRSIP 126 I S+ + + + K + A + A AV N + + ++ LI+ P Sbjct: 101 KDRLIYSLLLLDNSHYNAMVKAGNNLANIKAKLYNQAVTNVMQKVGMPVKNKLINQFVSP 160 Query: 127 EDL--PCQAFAVI--------KGDSISLSIAAASIIAKVT 156 + + ++ KG+ L+I + I++K Sbjct: 161 KTYYNYLKHEVIVVKDLTFVQKGEEQYLAIVCSMILSKYA 200 >gi|13507857|ref|NP_109806.1| similarity with ribonuclease HII [Mycoplasma pneumoniae M129] gi|13959724|sp|P75446|Y118_MYCPN RecName: Full=Uncharacterized protein MG199 homolog gi|11379450|gb|AAG34735.1|AE000004_4 ribonuclease HII-like protein [Mycoplasma pneumoniae M129] gi|301633315|gb|ADK86869.1| ribonuclease HII [Mycoplasma pneumoniae FH] Length = 236 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 4/57 (7%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DE G+G G + V+A+++ + I G+ DSK+ + + + L KI + Sbjct: 10 YLIGSDESGKGDSFGGIAVSAVLIHKDKINTLHQIGVGDSKQFNDYQIKALVPKIKA 66 >gi|327490667|gb|EGF22448.1| ribonuclease HIII [Streptococcus sanguinis SK1058] Length = 166 Score = 40.4 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 5/66 (7%) Query: 20 EKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREELYEKI 75 +N + G DEVG G+ G + VVA+ + + G+ DSK ++ K +L + Sbjct: 78 SQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDSKIRQLAPVL 136 Query: 76 TSSAII 81 +I Sbjct: 137 KEKLLI 142 >gi|325108602|ref|YP_004269670.1| hypothetical protein Plabr_2044 [Planctomyces brasiliensis DSM 5305] gi|324968870|gb|ADY59648.1| hypothetical protein Plabr_2044 [Planctomyces brasiliensis DSM 5305] Length = 323 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 14/26 (53%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAII 47 V GIDE G G GP+V+ A + Sbjct: 3 GRRFVIGIDEAGYGPNIGPLVIGATV 28 >gi|168704572|ref|ZP_02736849.1| hypothetical protein GobsU_33859 [Gemmata obscuriglobus UQM 2246] Length = 313 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILD-PNNIPFGINDSKKISHKKREE 70 M V GIDE G G GP+V AAI L P + P G + K + + E+ Sbjct: 1 MPWVVGIDEAGYGPNLGPLVQAAIALRLPESDPAGWDTLKSVVRRAHEK 49 Score = 35.0 bits (80), Expect = 6.9, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 12/75 (16%) Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI----AHKKYPDYGFDSHVGYPTAKHQ 185 P + D S+++A AS++ K R+ MR + P G GYP + Sbjct: 233 PVTVVFRPRADGDSVAVALASMLCKYLREMCMRQFNRFWAARVP--GLAPTAGYPVDAKR 290 Query: 186 --QVI----KEKGPS 194 I G + Sbjct: 291 FYAAIQPTMARLGLT 305 >gi|87306587|ref|ZP_01088734.1| hypothetical protein DSM3645_09647 [Blastopirellula marina DSM 3645] gi|87290766|gb|EAQ82653.1| hypothetical protein DSM3645_09647 [Blastopirellula marina DSM 3645] Length = 318 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 10/61 (16%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAII------LDPNNIPFGIND----SKKISHKKREELY 72 M + G+DE G G GP+V+AA + L N++ + + +K S R + Sbjct: 1 MTWLIGVDEAGYGPNLGPLVIAATVWKAPDSLSGNDLYEALGEVVAVAKSSSRDTRLLIA 60 Query: 73 E 73 + Sbjct: 61 D 61 >gi|262167731|ref|ZP_06035433.1| hypothetical protein VIJ_000901 [Vibrio cholerae RC27] gi|262023796|gb|EEY42495.1| hypothetical protein VIJ_000901 [Vibrio cholerae RC27] Length = 43 Score = 39.7 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 16/31 (51%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGA 36 + ++P EL +AG+DEVGRG Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGP 31 >gi|325962490|ref|YP_004240396.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Arthrobacter phenanthrenivorans Sphe3] gi|323468577|gb|ADX72262.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Arthrobacter phenanthrenivorans Sphe3] Length = 798 Score = 38.5 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 31/126 (24%) Query: 33 GRGALAGP-VVVAAIILDPNNIPFGINDSKKISHKKREEL---YEKITSSAIISISSASH 88 G GA GP VVVAA+ LDP + + + R + ++ +A + A Sbjct: 475 GDGAGVGPEVVVAAV-LDP-----------QSNAECRPVVIGDALRLRQAADVLGIEADI 522 Query: 89 QYIDKHNIHKATLDAIYHAVENLQVIPRSA-LIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 Q I VE+ P +ID +PEDLP + + G + I Sbjct: 523 QSI--------------RDVEDALFTPGRVNVIDLNLLPEDLPWGQLSPVAGHAAYEYIR 568 Query: 148 AASIIA 153 AS +A Sbjct: 569 VASELA 574 >gi|45356867|gb|AAS58472.1| ATP binding protein [Mycoplasma hyopneumoniae] Length = 1182 Score = 38.1 bits (88), Expect = 0.68, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI 75 V G DEVG G + V + N + I DSK ++ KK +L++ I Sbjct: 1076 LVIGCDEVGVGEYFTNLTVCCAVFREKEIKNELLIQIVDSKLLTEKKISDLFQVI 1130 >gi|58699315|ref|ZP_00374097.1| conserved hypothetical protein [Wolbachia endosymbiont of Drosophila ananassae] gi|58534168|gb|EAL58385.1| conserved hypothetical protein [Wolbachia endosymbiont of Drosophila ananassae] Length = 101 Score = 38.1 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 5/56 (8%) Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 ++ ++ R R M ++ + D+ Y +H I G + HR F P+ Sbjct: 49 VMKQIIRLRKMDDDDREEQEILLDT---Y--KQHLNAIGLYGITEHHRRNFAPISR 99 >gi|289808318|ref|ZP_06538947.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 37 Score = 37.7 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYH 106 +Y++I A+ S+ A ID+ NI AT+ A+ Sbjct: 1 MYDEIKEKALSWSLGRAEAHEIDELNILHATMLAMQR 37 >gi|149178610|ref|ZP_01857196.1| hypothetical protein PM8797T_07342 [Planctomyces maris DSM 8797] gi|148842536|gb|EDL56913.1| hypothetical protein PM8797T_07342 [Planctomyces maris DSM 8797] Length = 320 Score = 37.0 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 10/23 (43%), Positives = 14/23 (60%) Query: 23 MWPVAGIDEVGRGALAGPVVVAA 45 M + G+DE G G GP+V+ A Sbjct: 1 MGLIIGMDEAGYGPNLGPLVITA 23 >gi|218905782|ref|YP_002453616.1| ribonuclease HII [Bacillus cereus AH820] gi|218537245|gb|ACK89643.1| ribonuclease HII [Bacillus cereus AH820] Length = 142 Score = 36.6 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 44/121 (36%), Gaps = 21/121 (17%) Query: 90 YIDKHNIHKATLDAIYHAVENL-----QVIPRSALIDGRSIPEDL-----------PCQA 133 I + K A+ NL P LID + P+ Sbjct: 1 MIKETTKGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENV 60 Query: 134 FAVIKGDSISLSIAAASIIAKVT----RDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + KG+S+ L++AAASI+A+ + D L + A P G V AK Q + Sbjct: 61 YFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPK-GAGKQVDIAAAKLIQKLG 119 Query: 190 E 190 + Sbjct: 120 K 120 >gi|317765021|ref|NP_001187891.1| ribonuclease h2 subunit a [Ictalurus punctatus] gi|308324252|gb|ADO29261.1| ribonuclease h2 subunit a [Ictalurus punctatus] Length = 108 Score = 36.6 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 17/106 (16%) Query: 41 VVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI-TSSAIISIS---------SA 86 +V N + DSK +S +RE L+ K+ + + + S Sbjct: 1 MVYGICFCPVSRKENLKNLKVADSKTLSEAERENLFLKLDKAKGFVGWALQILSPNTIST 60 Query: 87 SHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPEDL 129 S K+N++ + DA V+ + V + +D E Sbjct: 61 SMLQRAKYNLNALSHDAAIGLVQYALDCGVQLKEVFVDTVGPAEKY 106 >gi|116669596|ref|YP_830529.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Arthrobacter sp. FB24] gi|116609705|gb|ABK02429.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Arthrobacter sp. FB24] Length = 792 Score = 36.6 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 31/126 (24%) Query: 33 GRGALAGP-VVVAAIILDPNNIPFGINDSKKISHKKREEL---YEKITSSAIISISSASH 88 G GA GP VVVAA+ LDP + + + R + ++ +A + A Sbjct: 469 GDGAGVGPEVVVAAV-LDP-----------QSNKECRPVVIGDALRLRQAADVLGIEADI 516 Query: 89 QYIDKHNIHKATLDAIYHAVENLQVIPRSA-LIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 I+K VE+ P +ID +PEDLP + + G + I Sbjct: 517 HTIEK--------------VEDAVFTPGRVNVIDLALLPEDLPWGQLSPVAGHAAYEYIR 562 Query: 148 AASIIA 153 AS +A Sbjct: 563 VASELA 568 >gi|327542095|gb|EGF28590.1| hypothetical protein RBWH47_03049 [Rhodopirellula baltica WH47] Length = 340 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%) Query: 23 MWPVAGIDEVGRGALAGPVVVAA 45 M+ +A +DE G G GP+V+AA Sbjct: 1 MFLIA-VDEAGYGPKLGPLVIAA 22 >gi|32471580|ref|NP_864573.1| hypothetical protein RB1758 [Rhodopirellula baltica SH 1] gi|32443421|emb|CAD72254.1| hypothetical protein RB1758 [Rhodopirellula baltica SH 1] Length = 340 Score = 35.8 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%) Query: 23 MWPVAGIDEVGRGALAGPVVVAA 45 M+ +A +DE G G GP+V+AA Sbjct: 1 MFLIA-VDEAGYGPKLGPLVIAA 22 >gi|169597971|ref|XP_001792409.1| hypothetical protein SNOG_01781 [Phaeosphaeria nodorum SN15] gi|160707630|gb|EAT91430.2| hypothetical protein SNOG_01781 [Phaeosphaeria nodorum SN15] Length = 210 Score = 35.8 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 3/54 (5%) Query: 33 GRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 GR L G +A+ L + +NDSK R + + + + A A Sbjct: 146 GREPLCG---ASAVRLPDDIPFPKLNDSKSADQIARAVVMKILKAWAKFFGGGA 196 >gi|238022509|ref|ZP_04602935.1| hypothetical protein GCWU000324_02417 [Kingella oralis ATCC 51147] gi|237867123|gb|EEP68165.1| hypothetical protein GCWU000324_02417 [Kingella oralis ATCC 51147] Length = 186 Score = 35.4 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%) Query: 141 SISLSIAAASIIAKVTRD---RLMRIAHKKYPDYGFD 174 +S S+A A+I+A V R+ +R YPDY FD Sbjct: 12 DLSASVANAAILAHVARELPEAEIRRLDALYPDYQFD 48 >gi|212634060|ref|YP_002310585.1| carbamoyl phosphate synthase large subunit [Shewanella piezotolerans WP3] gi|212555544|gb|ACJ27998.1| Carbamoyl-phosphate synthase, large subunit [Shewanella piezotolerans WP3] Length = 1073 Score = 35.4 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 64/172 (37%), Gaps = 22/172 (12%) Query: 38 AGPVVVA-AIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNI 96 AGP+V+ A G K + REE Y I ++ + + D I Sbjct: 15 AGPIVIGQAC----EFDYSGAQACKAL----REEGYRVILVNSNPATIMTDPEMADATYI 66 Query: 97 HKATLDAIYHAVENLQVIPRSALID---GRSIPEDLPCQAFAVIKGDSISLSIAAASIIA 153 + + + + + P + L ++ L ++ V+K ++ + A A I Sbjct: 67 EPIHWEVVRNIIA--KERPDAILPTMGGQTALNCALELESRGVLKEFNVDMIGATADAID 124 Query: 154 KVT----RDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 K D+ M+ + P G ++ + + V+ E G CI R +F Sbjct: 125 KAEDRSRFDKAMKSIGLECPRAGIAHNM----DEARAVLAEVGYPCIIRPSF 172 >gi|268602234|ref|ZP_06136401.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID18] gi|268586365|gb|EEZ51041.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID18] Length = 357 Score = 35.0 bits (80), Expect = 6.9, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 19/100 (19%) Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K +S +R EL + I I+ + + +A +DA + Sbjct: 160 KNLSPTQRRELADNI-----IAEKVRQQAVMQNSRVSEAEIDAFLEQAQK---------- 204 Query: 121 DGRSIPEDLPCQAFA----VIKGDSISLSIAAASIIAKVT 156 G ++PE P + + +IK DS + ++ A S I K+ Sbjct: 205 QGITLPEGAPLRQYRAQHILIKADSKNAAVGAESTIRKIY 244 >gi|59802035|ref|YP_208747.1| putative cis-trans isomerase [Neisseria gonorrhoeae FA 1090] gi|59718930|gb|AAW90335.1| putative cis-trans isomerase [Neisseria gonorrhoeae FA 1090] Length = 333 Score = 35.0 bits (80), Expect = 6.9, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 19/100 (19%) Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K +S +R EL + I I+ + + +A +DA + Sbjct: 136 KNLSPTQRRELADNI-----IAEKVRQQAVMQNSRVSEAEIDAFLEQAQK---------- 180 Query: 121 DGRSIPEDLPCQAFA----VIKGDSISLSIAAASIIAKVT 156 G ++PE P + + +IK DS + ++ A S I K+ Sbjct: 181 QGITLPEGAPLRQYRAQHILIKADSKNAAVGAESTIRKIY 220 >gi|239999806|ref|ZP_04719730.1| putative cis-trans isomerase [Neisseria gonorrhoeae 35/02] gi|240014962|ref|ZP_04721875.1| putative cis-trans isomerase [Neisseria gonorrhoeae DGI18] gi|240017410|ref|ZP_04723950.1| putative cis-trans isomerase [Neisseria gonorrhoeae FA6140] gi|240116565|ref|ZP_04730627.1| putative cis-trans isomerase [Neisseria gonorrhoeae PID18] gi|240122031|ref|ZP_04734993.1| putative cis-trans isomerase [Neisseria gonorrhoeae PID24-1] Length = 332 Score = 35.0 bits (80), Expect = 7.2, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 19/100 (19%) Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K +S +R EL + I I+ + + +A +DA + Sbjct: 135 KNLSPTQRRELADNI-----IAEKVRQQAVMQNSRVSEAEIDAFLEQAQK---------- 179 Query: 121 DGRSIPEDLPCQAFA----VIKGDSISLSIAAASIIAKVT 156 G ++PE P + + +IK DS + ++ A S I K+ Sbjct: 180 QGITLPEGAPLRQYRAQHILIKADSKNAAVGAESTIRKIY 219 >gi|195433004|ref|XP_002064505.1| GK23787 [Drosophila willistoni] gi|194160590|gb|EDW75491.1| GK23787 [Drosophila willistoni] Length = 639 Score = 35.0 bits (80), Expect = 7.2, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 22/150 (14%) Query: 61 KKISHKKREELYEKI----TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116 K+ + R L E++ A++ I S + + A ++P Sbjct: 376 KRTKAEHRARLRERLSALTKGVAVLHIGGQSEVEVSEKKDRVIDALNSTRAAIEEGIVPG 435 Query: 117 SALIDGRSIP--EDLPCQAFAVIKGDSI--------SLSIA------AASIIAKVTRDRL 160 R IP E L + + +G +I ++IA AAS++AKV + Sbjct: 436 GGTAFLRCIPQLESLVPGSQDLQQGINIVRNALRMPCMTIARNAGVDAASVVAKVMNRKD 495 Query: 161 MRIAHKKYPDYGFDSHVGY--PTAKHQQVI 188 +YG G PT + I Sbjct: 496 DYGYDAFRDEYGMLYDKGIIDPTKVMRTAI 525 >gi|194099607|ref|YP_002002738.1| putative cis-trans isomerase [Neisseria gonorrhoeae NCCP11945] gi|268595616|ref|ZP_06129783.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 35/02] gi|293398076|ref|ZP_06642281.1| peptidyl-prolyl cis-trans isomerase SurA [Neisseria gonorrhoeae F62] gi|193934897|gb|ACF30721.1| putative cis-trans isomerase [Neisseria gonorrhoeae NCCP11945] gi|268549005|gb|EEZ44423.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 35/02] gi|291611339|gb|EFF40409.1| peptidyl-prolyl cis-trans isomerase SurA [Neisseria gonorrhoeae F62] gi|317165096|gb|ADV08637.1| putative cis-trans isomerase [Neisseria gonorrhoeae TCDC-NG08107] Length = 333 Score = 35.0 bits (80), Expect = 7.2, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 19/100 (19%) Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K +S +R EL + I I+ + + +A +DA + Sbjct: 136 KNLSPTQRRELADNI-----IAEKVRQQAVMQNSRVSEAEIDAFLEQAQK---------- 180 Query: 121 DGRSIPEDLPCQAFA----VIKGDSISLSIAAASIIAKVT 156 G ++PE P + + +IK DS + ++ A S I K+ Sbjct: 181 QGITLPEGAPLRQYRAQHILIKADSKNAAVGAESTIRKIY 220 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.316 0.175 0.602 Lambda K H 0.267 0.0537 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,785,512,109 Number of Sequences: 14124377 Number of extensions: 243605656 Number of successful extensions: 584395 Number of sequences better than 10.0: 3128 Number of HSP's better than 10.0 without gapping: 5213 Number of HSP's successfully gapped in prelim test: 848 Number of HSP's that attempted gapping in prelim test: 568139 Number of HSP's gapped (non-prelim): 6431 length of query: 209 length of database: 4,842,793,630 effective HSP length: 133 effective length of query: 76 effective length of database: 2,964,251,489 effective search space: 225283113164 effective search space used: 225283113164 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 79 (34.6 bits)